Modified sequence Experiment N duplicates Sequence Length Missed cleavages Proteins Leading proteins Gene names Protein names Phospho (STY) Acetyl (K) All Phospho (STY) Probabilities All Acetyl (K) Probabilities Max Score Min PEP Intensity Reporter intensity corrected 1 Reporter intensity corrected 2 Reporter intensity corrected 3 Reporter intensity corrected 4 Reporter intensity corrected 5 Reporter intensity corrected 6 Reporter intensity corrected 7 Reporter intensity corrected 8 Reporter intensity corrected 9 Reporter intensity corrected 10 Phosphoproteome Acetylproteome Fullproteome TMT Channel Normal 1 TMT Channel Normal 2 TMT Channel Normal 3 TMT Channel Normal 4 TMT Channel Normal 5 TMT Channel Normal 6 TMT Channel Normal 7 TMT Channel Normal 8 TMT Channel Normal 9 TMT Channel Normal 10 TMT Channel Ratio 1 TMT Channel Ratio 2 TMT Channel Ratio 3 TMT Channel Ratio 4 TMT Channel Ratio 5 TMT Channel Ratio 6 TMT Channel Ratio 7 TMT Channel Ratio 8 TMT Channel Ratio 9 TMT Channel Ratio 10 Curve signal Log EC50 Curve slope Curve top Curve bottom R2 Curve RMSE Log EC50 error Curve slope error Curve top error Curve bottom error EC50 pEC50 Curve effect size Regulation (ac)MEDKVT(ph)SPEKAEEAK ddPTM_HeLa_CUDC101_4h_R1 1 MEDKVTSPEKAEEAK 15 2 H3BTD3;P56211-2 H3BTD3 ARPP19 cAMP-regulated phosphoprotein 19 1 0 MEDKVT(0.609)S(0.391)PEKAEEAK 53.278 0.027817 58232000 2527.6 2399.8 2451.7 2338.8 2573.8 2358.8 2123.7 1564.1 2831.9 3086.5 TRUE FALSE FALSE 2231.31856 2473.734994 2584.246318 2434.186373 2383.935902 2313.80982 2205.61182 1742.150822 2715.167883 3068.141361 0.727254157 0.806265 0.84228398 0.793374909 0.776996762 0.754140552 0.718875554 0.567819607 0.884955276 1 11.58314924 -13.52287875 0.195712131 2.154572768 0.697233196 0.552392735 0.07201445 23.21743103 0.278819335 10.25869973 0.075539713 3.00E-14 13.52287875 -1.457339572 (ac)S(ph)DNDDIEVESDADKR ddPTM_HeLa_CUDC101_4h_R1 3 SDNDDIEVESDADKR 15 1 A0A494C130;Q6V3B1;G3V563;G3V2R5;P61244-2 A0A494C130 MAX Protein max 1 0 S(1)DNDDIEVESDADKR;S(1)DNDDIEVESDADKR;S(1)DNDDIEVESDADKR ;; 149.94 1.81E-11 519510000 7424.2 7206.9 6499.7 6678.7 7714.2 6476.8 6034.5 5544.1 6456.6 8216 TRUE FALSE FALSE 6553.94653 7428.936047 6851.093443 6951.086254 7145.138835 6353.265831 6267.252686 6175.217934 6190.456215 8167.130867 0.802478451 0.909613935 0.83886172 0.851105041 0.874865231 0.777906701 0.767375078 0.756106157 0.757971963 1 12.99561363 -13.52287875 0.198658518 1.841186646 0.784250426 0 0.086202508 21.40921601 0.259039321 6.99660736 0.048444485 3.00E-14 13.52287875 -1.056936221 AAPSTAPAEAT(ph)PPKPGEAEAPPK ddPTM_HeLa_CUDC101_4h_R1 2 AAPSTAPAEATPPKPGEAEAPPK 23 1 O95817 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 AAPS(0.001)T(0.003)APAEAT(0.996)PPKPGEAEAPPK;AAPSTAPAEAT(1)PPKPGEAEAPPK ; 104.68 3.11E-05 271740000 13234.8 11134.5 12360.8 10677.6 10738.7 11333.1 9636.2 9548.7 11813.9 15877.7 TRUE FALSE FALSE 11683.43681 11477.54075 13029.06224 11113.07868 9946.527496 11116.94 10007.87146 10635.68541 11326.92604 15783.25873 0.740242367 0.727197149 0.825498869 0.704105462 0.630194795 0.704350108 0.634081442 0.673858649 0.717654461 1 13.94610749 -13.52287875 0.154322674 2.166824018 0.603303486 0.061671235 0.099542694 14.53309806 0.151507454 5.091417073 0.092366181 3.00E-14 13.52287875 -1.563520532 (ac)AAAAAAAGDSDSWDADAFSVEDPVRK ddPTM_HeLa_CUDC101_4h_R1 1 AAAAAAAGDSDSWDADAFSVEDPVRK 26 1 O75822-2;O75822;O75822-3 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 0 0 83.064 1.78E-10 3317900 1132.2 1189.6 1235.5 648.65 1373.1 1025.5 1169.1 932.17 1351.3 1136.9 FALSE FALSE TRUE 999.4852323 1226.250166 1302.294867 675.1047507 1271.809149 1005.940296 1214.192579 1038.284465 1295.598842 1130.137668 0.88439246 1.085044947 1.152332945 0.597365055 1.125357719 0.89010421 1.074375815 0.918723881 1.146407981 1 10.14228281 (ac)AAADGDDSLYPIAVLIDELR ddPTM_HeLa_CUDC101_4h_R1 1 AAADGDDSLYPIAVLIDELR 20 0 C9J9C1;P30153;M0QXG4;M0R0K6 C9J9C1 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 0 218.11 5.63E-192 33372000 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 AFSS(ph)PQEEEEAGFTGR ddPTM_HeLa_CUDC101_4h_R1 1 AFSSPQEEEEAGFTGR 16 0 A0A024RAC6;Q14241 A0A024RAC6 TCEB3 Transcription elongation factor B polypeptide 3 1 0 AFS(0.08)S(0.92)PQEEEEAGFTGR 273.44 8.08E-86 17853000 2113.3 1968.2 2274.5 2074.1 2033.1 2092.7 1836.8 1202.5 1901.3 2712.3 TRUE FALSE FALSE 1865.582178 2028.837909 2397.46635 2158.690763 1883.122264 2052.785234 1907.645991 1339.387739 1822.927609 2696.167119 0.691938628 0.752489671 0.889212814 0.800651691 0.698444191 0.76137166 0.707539966 0.496774747 0.676118181 1 11.39669421 -13.52287875 0.214999429 2.403211257 0.680546578 0 0.135330576 27.85202995 0.349478151 16.47260396 0.081567123 3.00E-14 13.52287875 -1.722664678 AGPSAQEPGSQT(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 2 AGPSAQEPGSQTPLK 15 0 O60271;A0A087X2D8;O60271-9;O60271-4;O60271-2 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 AGPSAQEPGSQT(1)PLK;AGPSAQEPGS(0.003)QT(0.997)PLK ; 211.49 6.30E-23 19623500 4025 3777.3 3445 3725.3 3712.7 3432 3586.6 3151.7 4178.2 4086.8 TRUE FALSE FALSE 3553.195602 3893.674136 3631.247121 3877.233836 3438.821518 3366.540318 3724.936363 3510.476788 4005.972828 4062.491532 0.874634587 0.958444862 0.893847308 0.954398011 0.846480907 0.828688575 0.916909324 0.864119165 0.986087675 1 11.98814909 -13.52287875 0.236427757 1.644643336 0.876068659 0.531629279 0.038992815 27.86843514 0.362357089 8.353252425 0.02704625 3.00E-14 13.52287875 -0.768574677 AHT(ph)PLNTPDPSTK ddPTM_HeLa_CUDC101_4h_R1 4 AHTPLNTPDPSTK 13 0 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 AHT(1)PLNTPDPSTK;AHT(1)PLNTPDPSTK;AHT(0.987)PLNT(0.013)PDPSTK;AHT(1)PLNTPDPSTK ;;; 115.58 0.0044232 275511000 27450.8 24841 25028.9 24909.4 25543.8 23470.4 23454.1 21227.7 29525.9 27881.1 TRUE FALSE FALSE 24233.05884 25606.32177 26382.03804 25925.313 23659.48476 23022.74122 24358.73249 23644.17556 28308.8299 27715.26198 0.874357921 0.9239069 0.951895676 0.935416487 0.853662678 0.830688205 0.878892378 0.853110304 1.021416645 1 14.75839302 -13.52287875 0.1791715 1.477992926 0.856834422 0.68964662 0.034338191 30.84635865 0.353089745 5.180087054 0.05422934 3.00E-14 13.52287875 -0.621158503 AKTQT(ph)PPVSPAPQPTEER ddPTM_HeLa_CUDC101_4h_R1 2 AKTQTPPVSPAPQPTEER 18 1 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 1 0 AKT(0.129)QT(0.757)PPVS(0.114)PAPQPTEER;AKT(0.109)QT(0.812)PPVS(0.077)PAPQPT(0.002)EER ; 148.52 0.0012028 138938000 3842.5 3699.7 4081.4 3721.5 3966.7 3217.6 3262.6 2958.3 3593.1 4469.3 TRUE FALSE FALSE 3392.087975 3813.683372 4302.05283 3873.278856 3674.084444 3156.229641 3388.439575 3295.060914 3444.990897 4442.716405 0.763516656 0.858412517 0.968338385 0.871826717 0.826990541 0.71042789 0.762695447 0.741677076 0.775424444 1 12.11722634 -13.52287875 0.253348972 2.229869069 0.786923149 0 0.098838031 32.04616334 0.424897537 19.80114498 0.046349937 3.00E-14 13.52287875 -1.44294592 ALEAELDAQHLSETFDNIDNLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 ALEAELDAQHLSETFDNIDNLSPK 24 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 0 ALEAELDAQHLSETFDNIDNLS(1)PK 97.877 9.17E-06 4170400 1906.3 1619 1383 1145.5 2059.7 1759.7 1726.1 1403.7 1884.4 1464.9 TRUE FALSE FALSE 1682.846404 1668.879471 1457.769163 1192.218441 1907.760035 1726.136654 1792.676255 1563.491534 1806.724234 1456.18671 1.155652907 1.146061463 1.001086711 0.818726358 1.310106748 1.185381409 1.231075825 1.073688919 1.240722925 1 10.50797963 -13.52287875 0.2546665 0.221883828 1.135471082 0 0.147739803 84.69946075 1.124404165 33.36949905 0.07619145 3.00E-14 13.52287875 0.913587254 ALGDS(ph)SPSQAMQEYIAVVK ddPTM_HeLa_CUDC101_4h_R1 1 ALGDSSPSQAMQEYIAVVK 19 0 A0A2R8Y544;Q9BR61 A0A2R8Y544 ACBD6 Acyl-CoA-binding domain-containing protein 6 1 0 ALGDS(0.562)S(0.435)PS(0.003)QAMQEYIAVVK 96.773 0.0020611 7067200 1247.3 1186.6 1072.7 1167.2 1265.5 1152.5 1112.1 769.06 1549.2 1348.5 TRUE FALSE FALSE 1101.093385 1223.15774 1130.693407 1214.803461 1172.146586 1130.517983 1154.99407 856.6066818 1485.34132 1340.479062 0.821417817 0.912478064 0.843499491 0.906245756 0.874423644 0.843368624 0.861627833 0.639030259 1.108067528 1 10.38853297 -13.52287875 0.167641019 1.622828285 0.793252127 0.556708204 0.076694222 41.4015253 0.455379884 8.531418785 0.114897607 3.00E-14 13.52287875 -0.829576157 APAPAPPPSGS(ph)TSCGDRDSR ddPTM_HeLa_CUDC101_4h_R1 1 APAPAPPPSGSTSCGDRDSR 20 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 APAPAPPPS(0.055)GS(0.297)T(0.297)S(0.297)CGDRDS(0.055)R 75.773 0.0033344 4250200 1566.7 1203.8 1757.7 1584.5 1618.7 1462.5 1384.5 814.68 1667.4 1881 TRUE FALSE FALSE 1383.053801 1240.887651 1852.726579 1649.122759 1499.291726 1434.605249 1437.900629 907.4198782 1598.669066 1869.811728 0.739675434 0.6636431 0.990862636 0.881972625 0.801841011 0.767245829 0.769008241 0.485300132 0.854989324 1 10.8686773 -13.52287875 0.206647742 2.128621142 0.724495481 0.197729749 0.129572854 44.66416235 0.550697564 20.42694797 0.119901436 3.00E-14 13.52287875 -1.404125661 APKPPTDGSTSPT(ph)STPSEDQEALGK ddPTM_HeLa_CUDC101_4h_R1 1 APKPPTDGSTSPTSTPSEDQEALGK 25 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;S4R3G4;F8WBN2;F6SRV7;Q8NHM5-5 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 0 APKPPTDGS(0.006)T(0.1)S(0.122)PT(0.566)S(0.179)T(0.027)PSEDQEALGK 108.88 2.82E-07 6416900 5305.9 4609.8 4752.3 4406.8 5308.8 5337 4093.2 3427 5566.1 5634.9 TRUE FALSE FALSE 4683.950445 4751.822474 5009.223713 4586.528352 4917.180401 5235.205617 4251.076095 3817.115828 5336.663002 5601.383364 0.836213153 0.848330165 0.89428332 0.818820647 0.877851074 0.934627266 0.758933253 0.681459486 0.952740181 1 12.45156746 -13.52287875 0.127906766 1.567467624 0.75201157 0.50888847 0.062583589 52.18388851 0.475222319 7.63095256 0.255775722 3.00E-14 13.52287875 -0.815456054 AQASPS(ph)EENKANK ddPTM_HeLa_CUDC101_4h_R1 1 AQASPSEENKANK 13 1 Q5T2D3 Q5T2D3 OTUD3 OTU domain-containing protein 3 1 0 AQAS(0.463)PS(0.537)EENKANK 79.337 0.0029905 0 4216.9 2341.4 4978.5 4621 4071.9 3480.4 3609 1812.3 4749.8 5349.5 TRUE FALSE FALSE 3722.601374 2413.535759 5247.652769 4809.464354 3771.524049 3414.017169 3748.200339 2018.604906 4554.011234 5317.680936 0.700042259 0.453869984 0.98683107 0.904428906 0.709242261 0.642012413 0.704856193 0.379602487 0.856390462 1 12.3765815 -13.52287875 0.148552101 2.125091759 0.580451489 0.260611985 0.170648562 60.88170604 0.618392587 20.11356428 0.416155295 3.00E-14 13.52287875 -1.54464027 (ac)AAPAQQTTQPGGGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 AAPAQQTTQPGGGKR 15 1 Q9NXG2;H3BNW0 Q9NXG2 THUMPD1 THUMP domain-containing protein 1 0 1 ; AAPAQQTTQPGGGK(1)R;AAPAQQTTQPGGGK(1)R 73.082 0.0011672 1452890 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 AQVAVSTLPVEEES(ph)S(ph)S(ph)ET(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 AQVAVSTLPVEEESSSETR 19 0 A0A087WW90;A0A0D9SF80;Q86UP8-4;Q86UP8-2;Q6EKJ0-2;Q86UP8-5;Q86UP8-3;Q86UP8;Q6EKJ0 A0A087WW90 GTF2IRD2B;GTF2IRD2 General transcription factor II-I repeat domain-containing protein 2A;General transcription factor II-I repeat domain-containing protein 2B 4 0 AQVAVSTLPVEEES(1)S(1)S(1)ET(1)R 56.424 0.029475 1791000000 3813.7 3262.3 3483.2 3369.4 3267.6 3022.2 3584 2779.5 3701.4 3813 TRUE FALSE FALSE 3366.663867 3362.807596 3671.512328 3506.818696 3026.555658 2964.55657 3722.236081 3095.907045 3548.826725 3790.320106 0.888226792 0.887209392 0.968654949 0.925203834 0.798496057 0.78213884 0.982037394 0.81679303 0.936286811 1 11.88810398 -13.52287875 0.161689299 1.474134 0.844925492 0.232355655 0.064854958 51.11351795 0.549475791 7.634555728 0.117350794 3.00E-14 13.52287875 -0.629208508 AS(ph)PTGTPSR ddPTM_HeLa_CUDC101_4h_R1 1 ASPTGTPSR 9 0 Q9UF83 Q9UF83 Uncharacterized protein DKFZp434B061 1 0 AS(0.931)PT(0.067)GT(0.002)PSR 97.597 0.019995 4524100 1507.8 954.57 1551.4 1499.7 1026.7 976.9 1081.5 614.16 1285.7 1956.7 TRUE FALSE FALSE 1331.05797 983.9791703 1635.273377 1560.864248 950.9623865 958.2672601 1123.213817 684.0734919 1232.702902 1945.061461 0.684326946 0.505885901 0.840730953 0.802475541 0.488911227 0.492666828 0.577469576 0.351697623 0.633760386 1 10.92560003 -13.52287875 0.067447466 2.554962003 1.10E-12 0.247067116 0.161823085 106.2516332 0.558276549 26.2946922 4.053177746 3.00E-14 13.52287875 -2.554962003 ASEDTTSGS(ph)PPKK ddPTM_HeLa_CUDC101_4h_R1 2 ASEDTTSGSPPKK 13 1 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 ASEDT(0.062)T(0.004)S(0.241)GS(0.694)PPKK;ASEDT(0.014)T(0.001)S(0.003)GS(0.982)PPKK ; 175.15 5.35E-07 666309000 4111.1 2803.1 4221 3851.2 3732.6 3754.9 3811.4 2335.74 4167.8 4644.3 TRUE FALSE FALSE 3629.20309 2889.460189 4449.200028 4008.268582 3457.253534 3683.281539 3958.406975 2601.6312 3996.00152 4616.675497 0.786107469 0.625874656 0.963723794 0.868215361 0.748862149 0.79782119 0.857415033 0.563529146 0.86555824 1 12.17263861 -13.52287875 0.220140255 2.177424589 0.751755799 0.171746448 0.117788112 38.30237125 0.485304516 19.34875503 0.086396098 3.00E-14 13.52287875 -1.425668789 (ac)AASSSGEK(ac)EKER ddPTM_HeLa_CUDC101_4h_R1 1 AASSSGEKEKER 12 2 Q9NPJ6 Q9NPJ6 MED4 Mediator of RNA polymerase II transcription subunit 4 0 1 AASSSGEK(0.867)EK(0.133)ER 59.426 0.036871 193080 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 AVTTVTQSTPVPGPSVPPPEELQVS(ph)PGPR ddPTM_HeLa_CUDC101_4h_R1 2 AVTTVTQSTPVPGPSVPPPEELQVSPGPR 29 0 P51610-2;P51610;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 AVTTVTQSTPVPGPS(0.001)VPPPEELQVS(0.999)PGPR;AVTTVTQSTPVPGPSVPPPEELQVS(1)PGPR ; 162.68 6.55E-17 80197000 3364.48 3035.99 3054.95 2882.52 3595.67 3120.81 3030.43 2058.13 3528.2 3541.63 TRUE FALSE FALSE 2970.100755 3129.525253 3220.109838 3000.081625 3330.424588 3061.285749 3147.3147 2292.4192 3382.766103 3520.564227 0.843643394 0.888927186 0.914657319 0.852159322 0.945991714 0.869544071 0.893980197 0.65115108 0.960859079 1 11.78159095 -13.52287875 0.193179971 1.622134663 0.831034645 0.341064834 0.073194167 44.20620291 0.527336977 10.42383173 0.080946342 3.00E-14 13.52287875 -0.791100018 (ac)AAVK(ac)TLNPK ddPTM_HeLa_CUDC101_4h_R1 1 AAVKTLNPK 9 1 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 1 AAVK(1)TLNPK 48.283 0.00095239 1251600 1398.2 1679.9 1424.4 1466.3 2843.2 1352.4 1107.9 996.27 2428.6 1995.3 FALSE TRUE FALSE 1234.305116 1731.655728 1501.407373 1526.102052 2633.4628 1326.605223 1150.632074 1109.68135 2328.49208 1983.431867 0.622307797 0.873060354 0.756974514 0.769424994 1.327730407 0.668843354 0.580121805 0.559475406 1.173971296 1 10.95378312 -9.582125173 1.373302185 0.999773701 0.760257138 0.230467757 0.216737285 0.692224698 2.344745973 0.152122462 0.035619365 2.62E-10 9.582125173 -0.239516563 (ac)AAVPELLQQQEEDR ddPTM_HeLa_CUDC101_4h_R1 1 AAVPELLQQQEEDR 14 0 U3KQL0;U3KQP5;Q5QPE4;Q5QPE5;Q9Y5X3-2;Q9Y5X3 U3KQL0 SNX5 Sorting nexin-5 0 0 129.89 3.41E-05 2249400 225.71 162.86 198.11 0 196.04 202.01 0 0 67.649 200.04 FALSE FALSE TRUE 199.252616 167.8775236 208.8204258 0 181.5785198 198.1569958 0 0 64.86047959 198.8501532 1.00202395 0.844241359 1.050139628 0 0.913142469 0.996514172 0 0 0.32617767 1 7.635537863 -5.186576647 0.505700227 1.008370259 5.31E-16 0.205694005 0.397817385 1.460804698 0.439088669 0.076255167 0.74095322 6.51E-06 5.186576647 -1.008370259 DFVTIS(ph)PVQPEER ddPTM_HeLa_CUDC101_4h_R1 1 DFVTISPVQPEER 13 0 Q9H611-2;Q9H611;Q9H611-3;Q9H611-4 Q9H611-2 PIF1 ATP-dependent DNA helicase PIF1 1 0 DFVT(0.059)IS(0.941)PVQPEER 120.29 0.0021922 4019500 885.36 633.44 898.83 710.92 794.61 778.15 801.08 469.33 839.24 991.42 TRUE FALSE FALSE 781.5794429 652.9555356 947.4234686 739.9143905 735.9932034 763.3080852 831.9779239 522.7566301 804.646172 985.5229897 0.793060589 0.662547239 0.961340809 0.750783491 0.746804703 0.774520831 0.844199407 0.530435754 0.816466161 1 9.944745716 -13.52287875 0.147908442 1.89323282 0.677804167 0.172086724 0.116639791 43.60141671 0.441538971 11.27510067 0.236752265 3.00E-14 13.52287875 -1.215428654 DGDSYDPYDFSDTEEEMPQVHT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 1 0 DGDSYDPYDFS(0.002)DT(0.164)EEEMPQVHT(0.834)PK;DGDSYDPYDFSDT(0.005)EEEMPQVHT(0.995)PK ; 103.88 6.14E-06 48291300 6273.9 6645.4 5285.9 5739.5 6529.1 4820.4 4283.9 4094 8190.5 7658.8 TRUE FALSE FALSE 5538.482953 6850.136897 5571.671743 5973.581618 6047.461301 4728.458901 4449.131458 4560.044411 7852.884123 7613.245117 0.727479921 0.89976571 0.731839269 0.784630145 0.794334244 0.621083234 0.584393565 0.598961986 1.031476591 1 12.89429581 -13.52287875 0.045847738 2.302905723 2.68E-12 0.792074649 0.068779066 199.4521577 0.72687639 34.32748792 9.493255537 3.00E-14 13.52287875 -2.302905723 TVTELVTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TVTELVTKK 9 1 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 0 1 ; TVTELVTK(1)K;TVTELVTK(1)K 174.02 0.0029356 22983000 9120.8 7682.4 7753 9597 9679.1 9427.8 8999.7 9328.2 5331.8 4511.8 FALSE TRUE FALSE 8051.67365 7919.085638 8172.150632 9988.407142 8965.092076 9247.980423 9346.821444 10390.08458 5112.020947 4484.963613 1.795259526 1.765696742 1.822121947 2.227087665 1.99892192 2.061996756 2.084035067 2.316648579 1.139813249 1 12.13088057 -9.881523204 0.197849269 2.53E-15 2.345972803 0.932133339 0.107767622 1.75460337 0.081715934 1.060143337 0.155235501 1.31E-10 9.881523204 2.345972803 (ac)ADAWEEIRR ddPTM_HeLa_CUDC101_4h_R1 2 ADAWEEIRR 9 1 O94874-3;O94874 O94874-3 UFL1 E3 UFM1-protein ligase 1 0 0 ; ; 105.57 0.0014656 8772500 1055.24 897.06 1013.85 615.11 2193.61 1885.23 1122.88 1432.02 1825.78 1104.06 FALSE FALSE TRUE 931.5463668 924.6973553 1068.661798 640.1968445 2031.791761 1849.272379 1166.189858 1595.035368 1750.520576 1097.493002 0.848794812 0.842554215 0.973729942 0.583326585 1.851302702 1.684996966 1.062594345 1.453344455 1.595017528 1 10.09999603 -5.763765143 24.99999808 0.901946317 1.493164757 0.410488001 0.309034941 29.78949903 320217.3977 0.032272718 0.060584796 1.72E-06 5.763765143 0.59121844 (ac)ADDIDIEAMLEAPYK ddPTM_HeLa_CUDC101_4h_R1 1 ADDIDIEAMLEAPYK 15 0 Q14498-2;Q14498;G3XAC6;Q5QP22;Q5QP23;Q14498-3;F8WF24;F2Z3E6;F2Z2Z5;F8WF73;A8MYG5 Q14498-2 RBM39 RNA-binding protein 39 0 0 51.841 0.0004836 0 693.21 805.46 628.82 587.63 643.58 1070.2 701.13 563.34 756.83 770.04 FALSE FALSE TRUE 611.9529746 830.2752679 662.8159113 611.5960914 596.1043856 1049.787718 728.172819 627.4683485 725.6331471 765.4597678 0.799458052 1.084675254 0.865905615 0.798991818 0.778753385 1.371447282 0.951288166 0.819727404 0.947970328 1 9.580182742 (ac)ADDLDFETGDAGASATFPMQCSALR ddPTM_HeLa_CUDC101_4h_R1 1 ADDLDFETGDAGASATFPMQCSALR 25 0 I3L397;I3L504;P63241;Q6IS14 I3L397 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like 0 0 42.03 0.0024431 6398700 65.405 0 221.55 62.735 153.49 198.17 182.48 64.009 0 191.1 FALSE FALSE TRUE 57.73832505 0 233.5276632 65.29360446 142.1673485 194.3902374 189.5183147 71.29552583 0 189.9633287 0.303944585 0 1.229330233 0.34371689 0.748393648 1.023304017 0.997657369 0.375312047 0 1 7.569577131 -4.01099656 19.99019654 0.68090212 0.191234711 0.017068274 0.425178923 162052921.1 7937618594 0.054958319 1410696950 9.75E-05 4.01099656 -0.489667409 (ac)ADDVDQQQTTNTVEEPLDLIR ddPTM_HeLa_CUDC101_4h_R1 2 ADDVDQQQTTNTVEEPLDLIR 21 0 P62310 P62310 LSM3 U6 snRNA-associated Sm-like protein LSm3 0 0 ; ; 271.56 5.38E-222 40623000 0 57.336 0 0 65.83 0 0 0 0 0 FALSE FALSE TRUE 0 59.1024542 0 0 60.97385205 0 0 0 0 0 0 DHFGLEGDEESTMLEDSVS(ph)PKK ddPTM_HeLa_CUDC101_4h_R1 3 DHFGLEGDEESTMLEDSVSPKK 22 1 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 DHFGLEGDEES(0.001)T(0.014)MLEDS(0.339)VS(0.646)PKK;DHFGLEGDEESTMLEDS(0.105)VS(0.895)PKK;DHFGLEGDEES(0.015)T(0.042)MLEDS(0.403)VS(0.54)PKK ;; 113.3 5.76E-06 95100700 8221.2 7164.44 6841.42 7266.06 8035.64 7379.73 6438.84 6072.98 8525 8847.9 TRUE FALSE FALSE 7257.523399 7385.167904 7211.287859 7562.401333 7442.866846 7238.973946 6687.188216 6764.303495 8173.595892 8795.272297 0.825161877 0.839674731 0.819905014 0.85982572 0.846234954 0.823052852 0.760316223 0.769084034 0.92931698 1 13.10251253 -13.52287875 0.188810238 1.830051249 0.778800258 0.740862415 0.034440404 13.53006899 0.159462514 4.114904896 0.035045239 3.00E-14 13.52287875 -1.051250991 DLPS(ph)PLPTK ddPTM_HeLa_CUDC101_4h_R1 2 DLPSPLPTK 9 0 H7C4E7;Q9Y534 H7C4E7 CSDC2 Cold shock domain-containing protein C2 1 0 DLPS(0.766)PLPT(0.234)K;DLPS(0.86)PLPT(0.14)K ; 130.56 0.003154 68673000 17617.2 14576.2 14464.8 14025.8 14840.3 13169.4 12906 11164.2 14786.1 20119.7 TRUE FALSE FALSE 15552.13852 15025.27544 15246.81084 14597.83275 13745.56064 12918.21564 13403.78874 12435.0874 14176.6107 20000.02713 0.777605871 0.751262753 0.762339508 0.729890647 0.687277099 0.645909906 0.670188528 0.621753527 0.708829573 1 14.28771434 -13.52287875 0.101747556 2.048891644 0.482150806 0.13167785 0.093648767 9.49222196 0.07189249 2.082841626 0.132306199 3.00E-14 13.52287875 -1.566740838 (ac)ADEK(ac)PKEGVK ddPTM_HeLa_CUDC101_4h_R1 2 ADEKPKEGVK 10 2 P61956-2;P61956 P61956-2 SUMO2 Small ubiquitin-related modifier 2 0 1 ; ADEK(0.978)PK(0.022)EGVK;ADEK(0.982)PK(0.018)EGVK 87.308 0.001985 68237000 16074.5 17264.9 16979.7 15909.1 20025.2 16092.7 17048.3 20233.7 17085 12457.1 FALSE TRUE FALSE 14190.27148 17796.81111 17897.67394 16557.94186 18547.98089 15785.75856 17705.85864 22537.02262 16380.74907 12383.00462 1.145947362 1.437196517 1.445341781 1.337150585 1.497857868 1.27479227 1.429851574 1.819996303 1.322841231 1 13.59607379 -1 0.088172564 0.633380197 3.4057942 0.364551579 0.165698622 59.8481597 0.383554592 1.661927831 20.18588218 0.1 1 2.772414002 (ac)ADFDTYDDR ddPTM_HeLa_CUDC101_4h_R1 3 ADFDTYDDR 9 0 Q15056;Q15056-2 Q15056 EIF4H Eukaryotic translation initiation factor 4H 0 0 ;; ;; 124.98 0.0023493 456793800 922.15 1081.47 875.91 925.87 849.21 920.69 882.67 805.98 1195.45 1137.6 FALSE FALSE TRUE 814.0569749 1114.788809 923.2643441 963.6309806 786.5654702 903.1293722 916.7148776 897.7295053 1146.173045 1130.833505 0.719873413 0.98581162 0.81644587 0.852142227 0.69556258 0.798640444 0.810654154 0.793865323 1.013564809 1 10.14317082 -9.497911316 1.157508983 1.003572414 0.802521056 0.526852255 0.074381364 0.349521314 0.81347594 0.058060511 0.013091145 3.18E-10 9.497911316 -0.201051357 DSGREDEPGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 DSGREDEPGSPR 12 1 Q2TAM9 Q2TAM9 TUSC1 Tumor suppressor candidate gene 1 protein 1 0 DSGREDEPGS(1)PR;DSGREDEPGS(1)PR;DSGREDEPGS(1)PR ;; 68.944 0.032742 191058000 12592.8 10876.6 12165.8 11188.7 11143.8 11163.4 10661.4 7375.9 12908.2 14514 TRUE FALSE FALSE 11116.69107 11211.69515 12823.51995 11645.02355 10321.74408 10950.47674 11072.61377 8215.542642 12376.11853 14427.67008 0.770511871 0.777096724 0.888814332 0.807131261 0.715413093 0.758991347 0.767456818 0.569429616 0.857804376 1 13.81655072 -13.52287875 0.118914763 1.816830248 0.622951407 0.502477282 0.075630706 39.69422487 0.341552467 7.830573799 0.325802413 3.00E-14 13.52287875 -1.193878842 DSGS(ph)DQDLDGAGVR ddPTM_HeLa_CUDC101_4h_R1 2 DSGSDQDLDGAGVR 14 0 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 DSGS(1)DQDLDGAGVR;DS(0.001)GS(0.999)DQDLDGAGVR ; 175.26 2.60E-07 22531000 1631.84 1628.27 1389.47 1612.94 1665.58 1605.35 1378.92 1053.3 1560.95 1825.17 TRUE FALSE FALSE 1440.558189 1678.435069 1464.588951 1678.722665 1542.713482 1574.730623 1432.105406 1173.203414 1496.60698 1814.313808 0.793996156 0.925107367 0.807241253 0.925265882 0.850301351 0.867948321 0.789337214 0.646637538 0.824888712 1 10.82520829 -13.52287875 0.223986576 1.92924074 0.799548436 0.025607583 0.090621057 34.3051935 0.437613543 14.05409293 0.058118306 3.00E-14 13.52287875 -1.129692304 DSPAFPDS(ph)PWRER ddPTM_HeLa_CUDC101_4h_R1 4 DSPAFPDSPWRER 13 1 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 DSPAFPDS(1)PWRER;DSPAFPDS(1)PWRER;DSPAFPDS(1)PWRER;DSPAFPDS(1)PWRER ;;; 116 0.0016991 23877100 8436.6 8254.5 8034 7185.9 9151.9 8050.9 7533.2 4420.94 9419.4 9943.7 TRUE FALSE FALSE 7447.674537 8508.811361 8468.342342 7478.972062 8476.78257 7897.342496 7823.758047 4924.20194 9031.128345 9884.55443 0.753465884 0.860818909 0.856724742 0.75663219 0.857578622 0.798957864 0.791513477 0.498171362 0.913660642 1 13.27096022 -13.52287875 0.146413295 1.796764466 0.688811625 0.440223992 0.093927204 46.99824021 0.472574659 10.94364751 0.237820912 3.00E-14 13.52287875 -1.107952841 DSS(ph)PTLASK ddPTM_HeLa_CUDC101_4h_R1 1 DSSPTLASK 9 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 DS(0.194)S(0.805)PT(0.002)LASK 97.734 0.019867 15539000 5294.1 3775.8 5083.4 5598.7 4780.6 4922.8 4334.2 3445.5 5709.8 5584.9 TRUE FALSE FALSE 4673.533623 3892.127923 5358.22398 5827.039186 4427.944662 4828.905792 4501.371546 3837.721793 5474.439627 5551.680766 0.841823192 0.701071997 0.965153474 1.049599109 0.797586325 0.869809702 0.810812389 0.691272059 0.986086891 1 12.4387089 -13.52287875 0.190213013 1.695056351 0.811443781 0.273130215 0.101484062 58.88327465 0.696735276 15.19821973 0.125647377 3.00E-14 13.52287875 -0.88361257 DSYVGDEAQS(ph)K ddPTM_HeLa_CUDC101_4h_R1 4 DSYVGDEAQSK 11 0 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;C9JUM1;C9JZR7;C9JTX5;P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65 P60709;P63267;P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 DSYVGDEAQS(1)K;DSYVGDEAQS(1)K;DSYVGDEAQS(1)K;DSYVGDEAQS(1)K ;;; 160.18 4.46E-08 98251000 12883.8 10687.5 12642.3 11014.5 12235.7 11346 9598.6 8963.6 13413.9 16087.6 TRUE FALSE FALSE 11373.58049 11016.76921 13325.78098 11463.71892 11333.09679 11129.59395 9968.821217 9983.979992 12860.97336 15991.91024 0.711208375 0.688896388 0.833282627 0.716844876 0.708676863 0.695951502 0.623366506 0.624314409 0.804217456 1 13.96505466 -13.52287875 0.184729365 2.336852928 0.63182607 0.454571684 0.078959172 14.92019743 0.173762495 7.153932792 0.066460256 3.00E-14 13.52287875 -1.705026858 EADDDEEVDDNIPEMPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 EADDDEEVDDNIPEMPSPK 19 0 P26358;P26358-2;P26358-3 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 EADDDEEVDDNIPEMPS(1)PK;EADDDEEVDDNIPEMPS(1)PK ; 166.91 1.99E-06 141172000 13943.5 12843 12461.5 12069.4 13335.4 12886.3 11848 9632.7 14386.7 14689.7 TRUE FALSE FALSE 12309.06407 13238.67761 13135.20638 12561.6423 12351.67411 12640.5153 12304.98133 10729.24763 13793.67414 14602.32501 0.842952342 0.906614364 0.899528423 0.860249466 0.845870373 0.865650866 0.842672747 0.734762966 0.944621773 1 13.83391048 -13.52287875 0.163041239 1.583075381 0.804221503 0.626384492 0.040985219 26.62711225 0.287778962 4.974516721 0.074191577 3.00E-14 13.52287875 -0.778853878 EADLVFISVNT(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 1 EADLVFISVNTPTK 14 0 O60701;E7ER83;E7ETF4;E7EV97 O60701 UGDH UDP-glucose 6-dehydrogenase 1 0 EADLVFIS(0.049)VNT(0.95)PT(0.001)K 132.65 0.0036339 14495000 7122.7 6161.6 5303.7 5775.1 6126.5 6230.4 5017.5 4581.5 7257.2 7691 TRUE FALSE FALSE 6287.787903 6351.431593 5590.434065 6010.63354 5674.560301 6111.565501 5211.026656 5103.039441 6958.055144 7645.25359 0.822443341 0.830767942 0.731229383 0.78619152 0.742233104 0.799393431 0.681602853 0.667478113 0.910114369 1 12.90034864 -13.52287875 0.089599602 1.873544107 0.529362338 0.796056057 0.043628412 28.47463417 0.193339156 4.732506767 0.408953765 3.00E-14 13.52287875 -1.34418177 EGSTQQLQTT(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 EGSTQQLQTTSPK 13 0 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 EGSTQQLQTT(0.811)S(0.189)PK 143.94 0.0029609 55731000 8634.5 7812.8 8020.9 7253.6 8151.5 7589.4 7291.4 5948.5 9606.6 9331 TRUE FALSE FALSE 7622.376999 8053.503108 8454.534116 7549.433161 7550.180085 7444.64484 7572.63174 6625.653195 9210.611882 9275.498797 0.821775429 0.868255528 0.911491048 0.813911287 0.813991813 0.802613962 0.816412347 0.714317725 0.993004482 1 13.17920915 -13.52287875 0.145323259 1.657314035 0.750833168 0.799245887 0.038000976 25.32592311 0.253322731 4.781617456 0.106552325 3.00E-14 13.52287875 -0.906480867 (ac)ADKEAAFDDAVEER ddPTM_HeLa_CUDC101_4h_R1 4 ADKEAAFDDAVEER 14 1 Q09028-3;Q09028;E9PNS2;E9PIC4;E9PNS6 Q09028-3 RBBP4 Histone-binding protein RBBP4 0 0 ;;; ;;; 129 9.86E-11 365241000 10428.2 8631.2 8370.6 8789.9 8979.1 8510.8 8017.1 8837.3 8992.81 8758.1 FALSE FALSE TRUE 9205.822204 8897.117042 8823.139956 9148.390115 8316.729682 8348.47067 8326.322233 9843.30251 8622.122565 8706.006432 1.057410453 1.021951582 1.013454335 1.050813618 0.955286416 0.958932288 0.956388247 1.130633499 0.990364828 1 13.08779537 -5.779248412 24.9823583 1.027655261 0.994217258 0.030791678 0.051587149 455.7985089 639389.1247 0.007371443 0.013382179 1.66E-06 5.779248412 -0.033438004 EGSTQQLQTTS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 EGSTQQLQTTSPK 13 0 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 EGSTQQLQTT(0.346)S(0.654)PK 122.64 0.0019416 62808000 7337 6105.7 6772.4 6441.7 6788.2 6786.7 6513.8 4817.4 7626.2 7469.5 TRUE FALSE FALSE 6476.967982 6293.80938 7138.536429 6704.420369 6287.44801 6657.255005 6765.039448 5365.793343 7311.844808 7425.071082 0.872310569 0.84764298 0.961409844 0.902943594 0.846786238 0.896591417 0.911107702 0.722658852 0.984750816 1 12.85818912 -13.52287875 0.170430632 1.514726251 0.838286768 0.456967623 0.056409598 41.00686847 0.455652217 7.035527658 0.089104595 3.00E-14 13.52287875 -0.676439483 (ac)ADKPDMGEIASFDK ddPTM_HeLa_CUDC101_4h_R1 4 ADKPDMGEIASFDK 14 1 P63313 P63313 TMSB10 Thymosin beta-10 0 0 ;;; ;;; 109.39 2.18E-32 703988000 11609.7 10817.8 11028 9546.2 11337.5 10788.2 9841.3 10330.3 10931 10709.8 FALSE FALSE TRUE 10248.82857 11151.0836 11624.20704 9935.535298 10501.15521 10582.43306 10220.88224 11506.2596 10480.41955 10646.09763 0.962684067 1.047433903 1.091874923 0.933256076 0.986385394 0.994019915 0.960059037 1.080795987 0.98443767 1 13.37803708 -4.248692955 23.72514515 0.99033952 1.080796105 0.252045187 0.043205089 1040.365605 1936379.001 0.006034838 0.135682993 5.64E-05 4.248692955 0.090456586 (ac)ADKPDMGEIASFDK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 1 ADKPDMGEIASFDKAK 16 2 P63313 P63313 TMSB10 Thymosin beta-10 0 1 ADKPDMGEIASFDK(1)AK 113.24 1.47E-17 688160 218.37 350.65 302.19 332.35 307.33 420.83 401.79 444.15 217.18 165.75 FALSE TRUE FALSE 192.7729996 361.4531109 318.5273055 345.9046695 284.6588782 412.8033689 417.2871749 494.7102407 208.2277485 164.7641116 1.169993864 2.193761174 1.933232318 2.099393285 1.727675253 2.505420415 2.532633902 3.002536389 1.263793107 1 7.364258223 -5.005416612 0.239666708 0.795223339 4.030965235 0.788744066 0.285875155 2.108395152 0.137417918 0.262026739 2.015483994 9.88E-06 5.005416612 3.235741896 EGVS(ph)STTPAKDAASAGLGSIGVK ddPTM_HeLa_CUDC101_4h_R1 2 EGVSSTTPAKDAASAGLGSIGVK 23 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 EGVS(0.54)S(0.116)T(0.105)T(0.232)PAKDAAS(0.004)AGLGS(0.003)IGVK;EGVS(0.558)S(0.152)T(0.152)T(0.137)PAKDAASAGLGSIGVK ; 52.97 0.016412 40760000 1674.57 1591.46 1455.23 1525.65 1948.22 1875.69 1182.39 683.31 1623.55 2113.98 TRUE FALSE FALSE 1478.279443 1640.490996 1533.904136 1587.872601 1804.503692 1839.914338 1227.995178 761.0952484 1556.626582 2101.405953 0.703471617 0.780663533 0.729941844 0.755623919 0.858712563 0.875563494 0.584368373 0.362183826 0.740754817 1 11.03713918 -13.52287875 0.044568023 2.257107985 3.52E-12 0.261057981 0.141344333 400.2722817 1.419398427 66.44801161 19.03420658 3.00E-14 13.52287875 -2.257107985 (ac)ADLEEQLSDEEK ddPTM_HeLa_CUDC101_4h_R1 4 ADLEEQLSDEEK 12 0 P47755;C9JUG7;F8W9N7;P47755-2;F8WED3 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 0 0 ;;; ;;; 190.24 2.08E-27 46891500 8830.8 6761.14 5694.65 6145.9 6688.85 7362.8 6013.53 5835.22 7280.6 9211.3 FALSE FALSE TRUE 7795.667011 6969.442709 6002.520004 6396.556367 6195.426862 7222.366857 6245.473866 6499.477858 6980.490586 9156.510778 0.851379658 0.761146126 0.655546654 0.698580117 0.67661438 0.788768455 0.682080109 0.709820369 0.762352686 1 13.16058223 -7.756362137 0.746402184 0.975615938 0.698975284 0.367960756 0.078295865 0.137781108 0.167984166 0.014076641 0.012033039 1.75E-08 7.756362137 -0.276640654 (ac)ADLEEQLSDEEKVR ddPTM_HeLa_CUDC101_4h_R1 2 ADLEEQLSDEEKVR 14 1 P47755;C9JUG7;F8W9N7;P47755-2 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 0 0 ; ; 126.71 0.00012533 19111000 3437.8 3747.5 3057.1 3373.1 4207.6 3728.4 3179 3897.9 3938.6 3854.9 FALSE FALSE TRUE 3034.826295 3862.956033 3222.376073 3510.669598 3897.213731 3657.286982 3301.615095 4341.62118 3776.249241 3831.970883 0.791975301 1.008085956 0.840918726 0.916152472 1.017025925 0.954414084 0.861597125 1.132999522 0.985458751 1 11.90387088 -5.882216002 6.87664938 0.903716599 0.979266038 0.089412814 0.091007292 0.384309002 21.74460434 0.014778866 0.026950268 1.31E-06 5.882216002 0.075549439 (ac)ADMQNLVER ddPTM_HeLa_CUDC101_4h_R1 2 ADMQNLVER 9 0 Q01518-2;Q01518;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9;Q5T0R8;Q5T0S3 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 0 0 ; ; 144.12 1.74E-42 10609100 452.65 517.82 398.31 569.61 745.02 549.39 331.05 374.71 729.67 369.76 FALSE FALSE TRUE 399.5910532 533.7734204 419.8438434 592.8411579 690.0613589 538.9113011 343.8187094 417.3654718 699.5926938 367.5606511 1.087143175 1.452205014 1.142243715 1.612907029 1.877408142 1.466183335 0.935406737 1.135500959 1.903339467 1 8.521838518 -7.352699824 4.361130838 1.037490257 1.380759006 0 0.371601754 0.237693517 7.871627174 0.047224301 0.053856532 4.44E-08 7.352699824 0.343268749 (ac)ADQLTEEQIAEFK ddPTM_HeLa_CUDC101_4h_R1 1 ADQLTEEQIAEFK 13 0 P0DP25;P0DP24;P0DP23;F8WBR5;M0QZ52;G3V479 P0DP25 CALM2;CALM3;CALM1 0 0 179.57 3.92E-85 51648000 4137.5 3777.3 3649.4 3199.3 3481.1 3724.3 3954.1 3628.8 3619.3 4254.8 FALSE FALSE TRUE 3652.508522 3893.674136 3846.697603 3329.781283 3224.306188 3653.265183 4106.610962 4041.887924 3470.110922 4229.49226 0.86358085 0.920600842 0.909493945 0.787276836 0.762338832 0.863759751 0.97094656 0.955643769 0.820455674 1 12.04626877 -9.293284275 0.714010151 1.012616701 0.875003822 0 0.084045239 0.893186624 0.697046574 0.07536483 0.01436142 5.09E-10 9.293284275 -0.137612879 (ac)ADQLTEEQVTEFK ddPTM_HeLa_CUDC101_4h_R1 2 ADQLTEEQVTEFK 13 0 P27482 P27482 CALML3 Calmodulin-like protein 3 0 0 ; ; 123.63 3.49E-05 22800000 9644.9 9324.8 8209.7 8691.1 9401 9015.1 8568.6 8232 9436.3 9418.2 FALSE FALSE TRUE 8514.339443 9612.086035 8653.541215 9045.560624 8707.506959 8843.151988 8899.093772 9169.097605 9047.33172 9362.180128 0.909439823 1.026693132 0.924308345 0.966181007 0.930072573 0.944561188 0.950536483 0.979376329 0.966370183 1 13.19262881 -9.66365887 1.513762146 0.999984451 0.947469311 0.054673763 0.033050884 0.432456839 1.784073697 0.022602247 0.005079102 2.17E-10 9.66365887 -0.05251514 ELEEIVQPIIS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ELEEIVQPIISK 12 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 1 0 ELEEIVQPIIS(1)K 130.98 0.0015324 2422700 2104.2 1971.8 2030.2 1741.3 2034.7 2085 1608.5 1562.8 2244.2 2472.3 TRUE FALSE FALSE 1857.548866 2032.548821 2139.958753 1812.317741 1884.604235 2045.232099 1670.540384 1740.702835 2151.693126 2457.59465 0.755840214 0.827048033 0.870753341 0.737435582 0.766849096 0.832208883 0.679746102 0.708295339 0.87552808 1 11.26303126 -13.52287875 0.213522526 2.184283529 0.73277692 0.486494309 0.064900251 18.8545167 0.235885455 9.310015395 0.047498939 3.00E-14 13.52287875 -1.451506609 (ac)ADVLDLHEAGGEDFAMDEDGDESIHK ddPTM_HeLa_CUDC101_4h_R1 3 ADVLDLHEAGGEDFAMDEDGDESIHK 26 0 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 0 0 ;; ;; 115.85 2.46E-30 13834600 3335.89 2126.28 2057.6 2026.97 3687.54 3068.58 2521.78 2533.14 3197.86 2669.99 FALSE FALSE TRUE 2944.862031 2191.788167 2168.84008 2109.638598 3415.517521 3010.051949 2619.045899 2821.502418 3066.042857 2654.108781 1.109548355 0.82580947 0.817163221 0.794857623 1.286879251 1.134110241 0.986789207 1.063069622 1.155206177 1 11.37401179 -5.75304974 24.99997128 0.998506955 1.109531666 0.217868307 0.137967711 332.1201144 989664.0129 0.021733847 0.042903622 1.77E-06 5.75304974 0.111024711 ELSLT(ph)PITGAK ddPTM_HeLa_CUDC101_4h_R1 1 ELSLTPITGAK 11 0 B9EGQ5;A0A669KBG4;M0QXA7;A0A669KBH9;A0A2R8YFV2;A0A669KAV7;O95785-4;O95785-3;O95785;O95785-2 B9EGQ5 WIZ Protein Wiz 1 0 ELS(0.045)LT(0.955)PITGAK 112.84 0.029807 9594600 1397.5 1576.8 1308 1357.6 1501.2 1311.6 1167.2 763.92 1500.9 2115.5 TRUE FALSE FALSE 1233.687168 1625.379339 1378.714436 1412.968796 1390.459467 1286.583415 1212.219295 850.8815649 1439.032267 2102.916912 0.586655213 0.772916576 0.655620024 0.671908998 0.661205138 0.611808963 0.576446596 0.404619679 0.68430296 1 11.03817613 -13.52287875 0.208428087 2.907750855 0.549627558 0.228315389 0.12697878 17.77716025 0.220048282 13.8103793 0.078160032 3.00E-14 13.52287875 -2.358123297 ELSNSVSTYRPFGLGS(ph)ESPYKQPSDGMERPSSLMDSSQEK ddPTM_HeLa_CUDC101_4h_R1 1 ELSNSVSTYRPFGLGSESPYKQPSDGMERPSSLMDSSQEK 40 3 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 ELS(0.003)NS(0.012)VS(0.01)T(0.01)Y(0.01)RPFGLGS(0.303)ES(0.303)PY(0.289)KQPS(0.052)DGMERPS(0.003)S(0.003)LMDS(0.001)S(0.001)QEK 43.066 0.0082519 39572000 1650.8 1327.4 1553.9 1371.6 1598.7 1381.2 1361.6 1078.7 1369.7 1715.6 TRUE FALSE FALSE 1457.295726 1368.295621 1637.908534 1427.539777 1480.767086 1354.855911 1414.117368 1201.494848 1313.240386 1705.395535 0.854520665 0.802333296 0.960427362 0.837072543 0.868283665 0.794452597 0.829201988 0.704525621 0.770050325 1 10.73589067 -13.52287875 0.065863029 1.621281514 0.584900823 0 0.085778067 117.5664561 0.604251447 11.58772677 1.863232197 3.00E-14 13.52287875 -1.036380692 (ac)AEDLDELLDEVESK ddPTM_HeLa_CUDC101_4h_R1 1 AEDLDELLDEVESK 14 0 Q96NL8 Q96NL8 C8orf37 Protein C8orf37 0 0 124.1 1.05E-42 0 410.59 243.62 278.73 233.29 351.73 383.92 230.33 297.85 375.22 321.46 FALSE FALSE TRUE 362.4612626 251.1256434 293.7989869 242.8045746 325.7835786 376.5973657 239.2139053 331.75604 359.7532728 319.5479416 1.134293843 0.785877832 0.919420684 0.759837705 1.019513933 1.178531659 0.748600989 1.038204278 1.125819403 1 8.319888584 -7.278884831 24.94346301 1.063416535 0.922148692 0.239825561 0.132914015 953.2823049 1362997.697 0.022595098 0.02586867 5.26E-08 7.278884831 -0.141267844 ENS(ph)PAAFPDR ddPTM_HeLa_CUDC101_4h_R1 1 ENSPAAFPDR 10 0 A0A0J9YWJ4;K7EJD2;A0A0J9YWB6;A0A0A0MR03;Q9Y5B0-4;Q9Y5B0 A0A0J9YWJ4 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 0 ENS(1)PAAFPDR 115.8 0.0061988 12478000 2255 1756.6 2070.8 1987.9 1867.8 1909.7 1670.6 1364.4 2273.9 2675.7 TRUE FALSE FALSE 1990.672318 1810.718764 2182.753712 2068.975154 1730.016115 1873.275654 1735.035602 1519.717781 2180.16888 2659.784817 0.748433597 0.680776412 0.820650489 0.777873135 0.650434616 0.704295942 0.652321793 0.571368695 0.819678669 1 11.37709382 -13.52287875 0.122016224 2.051726582 0.541813361 0.555613325 0.076246124 24.84507117 0.218158698 6.378405412 0.246212135 3.00E-14 13.52287875 -1.50991322 (ac)AEEQPQVELFVK ddPTM_HeLa_CUDC101_4h_R1 1 AEEQPQVELFVK 12 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 0 101.11 0.020632 3021000 2453.1 2233.1 1772.9 1913.5 2501.9 1872.8 2447.3 2107.6 2284.9 2130.2 FALSE FALSE TRUE 2165.551337 2301.899164 1868.748337 1991.540801 2317.339821 1837.07946 2541.693181 2347.520665 2190.715455 2117.529476 1.022678249 1.087068298 0.882513494 0.940502044 1.094360125 0.867557917 1.20031065 1.108612981 1.034561965 1 11.04816634 -4.739158039 24.99999851 1.000511735 1.154461884 0.42254664 0.07573398 164.3722444 184425.1684 0.009471572 0.035383018 1.82E-05 4.739158039 0.153950149 (ac)AENDVDNELLDYEDDEVETAAGGDGAEAPAKK ddPTM_HeLa_CUDC101_4h_R1 3 AENDVDNELLDYEDDEVETAAGGDGAEAPAKK 32 1 Q13838-2;Q13838;Q5STU3;F6TRA5;A0A0A0MT12;F6S4E6;F6WLT2;A0A0G2JHN7;F6U6E2;F6S2B7;F6R6M7 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 0 ;; ;; 158.91 3.12E-29 119051000 12532.1 11942 11032.3 10458.1 12579.7 12108.6 10824 11016.2 12418.7 11725.4 FALSE FALSE TRUE 11063.10624 12309.91887 11628.73951 10884.62652 11651.72059 11877.64863 11241.48531 12270.23968 11906.79593 11655.6568 0.949161976 1.056132578 0.997690624 0.933849264 0.999662292 1.019045845 0.964466053 1.052728292 1.021546545 1 13.50874268 -4.251266762 23.92153949 0.983397269 1.052728364 0.149287546 0.035702335 857.8518118 2017218.092 0.004856931 0.085216419 5.61E-05 4.251266762 0.069331095 EPVRADS(ph)PVHMEQQSR ddPTM_HeLa_CUDC101_4h_R1 1 EPVRADSPVHMEQQSR 16 1 O95402 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 EPVRADS(1)PVHMEQQSR 58.824 0.035281 29475000 1291.5 1104.3 1126.6 1107.9 1183.7 1127 1002.2 943.2 1152.3 1460 TRUE FALSE FALSE 1140.112328 1138.322174 1187.507404 1153.084951 1096.380809 1105.504353 1040.85519 1050.570075 1104.801706 1451.315855 0.785571469 0.784337999 0.818228093 0.794509994 0.755439145 0.76172554 0.717180334 0.723874181 0.761241395 1 10.50314582 -13.52287875 0.176234324 2.00262441 0.708727952 0 0.079392704 8.917500675 0.101098176 3.054017127 0.034072753 3.00E-14 13.52287875 -1.293896458 SS(ph)PPSAGNSPSSLK ddPTM_HeLa_CUDC101_4h_R1 1 SSPPSAGNSPSSLK 14 0 P57682;P57682-2 P57682 KLF3 Krueppel-like factor 3 1 0 S(0.1)S(0.326)PPS(0.215)AGNS(0.235)PS(0.062)S(0.062)LK 108.23 0.0040031 27002000 1341.7 1150.3 1132.4 1082.6 1023.8 990.8 1096.5 861.37 1749.8 2042.5 TRUE FALSE FALSE 1184.42796 1185.73938 1193.620969 1126.753107 948.2763137 971.9021408 1138.792372 959.424879 1677.672503 2030.351119 0.583361148 0.584007056 0.587888941 0.554954804 0.467050406 0.478686731 0.560884451 0.47254136 0.826296736 1 10.98751353 -9.456725179 0.360398192 1.208652212 0.492087602 0.846038249 0.063602885 0.388564469 0.05928736 0.111952495 0.013725204 3.49E-10 9.456725179 -0.71656461 (ac)AEPDYIEDDNPELIRPQK ddPTM_HeLa_CUDC101_4h_R1 2 AEPDYIEDDNPELIRPQK 18 1 F8WCJ2;C9JYP1;C9J6Y8;X6RET8;C9JP05;C9J3Q3;C9J6N5;C9JQ40;C9JW51;A0A1C7CYX8;Q9H098 F8WCJ2 FAM107B Protein FAM107B 0 0 ; ; 110.08 7.40E-06 2517500 1538.29 1421.93 1335.44 1221.41 1461.16 1325.16 1351.74 1248.31 1516.38 1659.8 FALSE FALSE TRUE 1357.973978 1465.737978 1407.637926 1271.224379 1353.373138 1299.884781 1403.877065 1390.412565 1453.874175 1649.927436 0.823050729 0.888365116 0.853151415 0.770472902 0.820262218 0.787843606 0.850872005 0.842711343 0.881174616 1 10.68818686 -9.518381956 0.469492439 1.059681731 0.820464155 0.36353583 0.048379109 0.690731186 0.174991976 0.080627817 0.008834724 3.03E-10 9.518381956 -0.239217575 ESVPEFPLS(ph)PPKK ddPTM_HeLa_CUDC101_4h_R1 1 ESVPEFPLSPPKK 13 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 ESVPEFPLS(1)PPKK 92.8 0.0024038 0 3241.7 2756.9 2909.2 3023.7 2782 2577.1 2213.2 1452.2 3259.1 5592.3 TRUE FALSE FALSE 2861.71284 2841.836821 3066.480152 3147.019556 2576.777403 2527.946111 2298.563865 1617.512578 3124.758519 5559.036751 0.514785739 0.511210296 0.551620773 0.566108788 0.463529478 0.45474535 0.413482401 0.290969938 0.56210431 1 12.4406192 -13.52287875 0.173562821 3.239345991 0.335321391 0.255250684 0.150714054 10.22097789 0.114829825 7.704660466 0.091109143 3.00E-14 13.52287875 -2.904024601 ESVSPEDS(ph)EK ddPTM_HeLa_CUDC101_4h_R1 1 ESVSPEDSEK 10 0 A0A1W2PP02;P35251-2;P35251 A0A1W2PP02;P35251-2 RFC1 Replication factor C subunit 1 1 0 ES(0.001)VS(0.086)PEDS(0.912)EK 177.44 1.11E-07 41413000 4944.9 4302.5 4932.3 4548.6 3720.6 4467.3 4110.1 3680.2 3277.4 5796.1 TRUE FALSE FALSE 4365.266318 4435.054925 5198.955057 4734.111569 3446.13875 4382.093696 4268.627934 4099.139092 3142.304185 5761.624539 0.757645051 0.769757712 0.902341869 0.821662629 0.598119285 0.760565647 0.740872284 0.711455435 0.545385102 1 12.49225993 -13.52287875 0.190692243 2.118232505 0.70418545 0 0.160180073 25.05920835 0.296908472 10.38471281 0.084987079 3.00E-14 13.52287875 -1.414047055 FTYFSSLS(ph)PMAR ddPTM_HeLa_CUDC101_4h_R1 1 FTYFSSLSPMAR 12 0 Q9H425 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 0 FTYFS(0.005)S(0.116)LS(0.878)PMAR 160.48 0.00011934 11545000 801.39 799.28 676.75 647.61 893.56 894.5 442.37 416.49 860.27 992.73 TRUE FALSE FALSE 707.452279 823.9048694 713.3371521 674.022335 827.643859 877.4389028 459.4323591 463.9015381 824.8093065 986.8251978 0.716897259 0.834904572 0.722860699 0.683021002 0.83869348 0.889153322 0.4655661 0.470094946 0.835821084 1 9.946650744 -13.52287875 0.047133308 2.30587765 2.04E-13 0.425527024 0.124470134 312.53367 1.169752235 54.72855902 14.61040921 3.00E-14 13.52287875 -2.30587765 (ac)AEQDVENDLLDYDEEEEPQAPQESTPAPPK ddPTM_HeLa_CUDC101_4h_R1 2 AEQDVENDLLDYDEEEEPQAPQESTPAPPK 30 0 O00148;K7EQN7;O00148-3;O00148-2;K7ENP6;K7EL56;K7EIL8;K7EN69 O00148 DDX39A ATP-dependent RNA helicase DDX39A 0 0 ; ; 106.67 1.70E-16 16135500 19127.7 15628.2 13426.5 14771.2 17195.5 16956.3 15612.5 14897.1 16935.5 17779.4 FALSE FALSE TRUE 16885.58 16109.68632 14152.3772 15373.63338 15927.02222 16632.88683 16214.67935 16592.92565 16237.41152 17673.64734 0.955410034 0.91150887 0.800761548 0.869861953 0.901173477 0.941112296 0.917449525 0.938851236 0.918735743 1 14.10931218 -7.464426127 2.040372902 0.983290387 0.895045552 0.255851999 0.043490686 0.20326717 1.652796306 0.008125872 0.008942196 3.43E-08 7.464426127 -0.088244835 (ac)AESDWDTVTVLR ddPTM_HeLa_CUDC101_4h_R1 3 AESDWDTVTVLR 12 0 O60869-2;O60869-3;O60869 O60869-2 EDF1 Endothelial differentiation-related factor 1 0 0 ;; ;; 163.64 1.09E-42 9007500 1499.04 1288.33 1471.46 1097.01 1202.79 1089.19 849.94 1114.28 1288.75 1107.8 FALSE FALSE TRUE 1323.324804 1328.02192 1551.011579 1141.750809 1114.062578 1068.415515 882.7224705 1241.125131 1235.62718 1101.210756 1.201699853 1.205965264 1.408460251 1.036814073 1.011670629 0.970218924 0.80159267 1.127055038 1.122062396 1 10.10487489 -5.872464375 3.585601148 1.131859431 0.962930018 0.336762942 0.127293775 0.273040127 6.794707376 0.021572156 0.041046865 1.34E-06 5.872464375 -0.168929412 GAANAS(ph)GSSPDAPAK ddPTM_HeLa_CUDC101_4h_R1 1 GAANASGSSPDAPAK 15 0 E7EPJ7;O75962-5;O75962-4;O75962 E7EPJ7 TRIO Triple functional domain protein 1 0 GAANAS(0.512)GS(0.325)S(0.163)PDAPAK 91.712 0.010029 12164000 7293.6 6618.3 6963 6540.8 6414.3 6945.8 6174.2 5030 7157.4 8123.4 TRUE FALSE FALSE 6438.655264 6822.201978 7339.440842 6807.562096 5941.129868 6813.320437 6412.340962 5602.594868 6862.368943 8075.081656 0.797348626 0.844846191 0.908899892 0.843033221 0.735736197 0.843746321 0.794089922 0.693812782 0.849820378 1 12.97926113 -13.52287875 0.189150665 1.859821793 0.76515925 0.25547444 0.070031356 24.6439214 0.290728831 7.822784936 0.066144687 3.00E-14 13.52287875 -1.094662544 GADFLVTEVENGGS(ph)LGSK ddPTM_HeLa_CUDC101_4h_R1 2 GADFLVTEVENGGSLGSK 18 0 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BQ34 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 1 0 GADFLVTEVENGGS(0.99)LGS(0.01)K;GADFLVTEVENGGS(0.5)LGS(0.5)K ; 148.52 7.04E-05 10069400 3718.3 3353.2 2939.04 2853.81 3424.6 2971.64 2805.55 2498.23 4260.1 4015.4 TRUE FALSE FALSE 3282.446511 3456.508117 3097.933393 2970.200707 3171.974081 2914.960918 2913.761003 2782.618405 4084.496875 3991.516222 0.822355799 0.86596369 0.776129476 0.744128432 0.79467899 0.730289132 0.729988516 0.697133182 1.02329457 1 11.96272116 -13.52287875 0.094206022 1.822993706 0.568807387 0.944115604 0.025393876 20.35113702 0.144335719 3.311129803 0.254403591 3.00E-14 13.52287875 -1.254186319 GAPSS(ph)PATGVLPSPQGK ddPTM_HeLa_CUDC101_4h_R1 3 GAPSSPATGVLPSPQGK 17 0 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 1 0 GAPS(0.085)S(0.901)PAT(0.014)GVLPSPQGK;GAPS(0.086)S(0.914)PATGVLPSPQGK;GAPS(0.027)S(0.973)PATGVLPSPQGK ;; 230.96 2.77E-43 79039000 12939 9613.2 9819.3 10206.1 12019.2 11532 11052.6 10283.5 10308.4 10005.1 TRUE FALSE FALSE 11422.31003 9909.371298 10350.16106 10622.34887 11132.56756 11312.04631 11478.90248 11454.13207 9883.483389 9945.58922 1.148479973 0.996358393 1.040678519 1.06804621 1.119347212 1.137393277 1.154170178 1.151679586 0.99375544 1 13.27984113 -13.52287875 0.297698063 0.095507158 1.115136244 0.439297757 0.048921479 42.00886023 0.568579565 22.83638097 0.023782441 3.00E-14 13.52287875 1.019629086 GDEELDS(ph)LIK ddPTM_HeLa_CUDC101_4h_R1 2 GDEELDSLIK 10 0 P0C0S5;A0A494C189;Q71UI9-4;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386 P0C0S5;Q71UI9 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V;Histone H2A 1 0 GDEELDS(1)LIK;GDEELDS(1)LIK ; 130.56 0.0022482 8540600 3403.9 3442.4 3191.1 2935.1 3838.5 3123.1 2637.6 2463.5 3240.9 4059.9 TRUE FALSE FALSE 3004.900002 3548.456264 3363.620519 3054.806065 3555.341502 3063.532071 2739.333116 2743.934882 3107.30873 4035.751534 0.744570119 0.879255384 0.833455799 0.756936109 0.880961445 0.759098286 0.678766543 0.679906793 0.769945499 1 11.97862164 -13.52287875 0.212813369 2.142771702 0.735434226 0 0.095405372 24.63465884 0.307757539 11.74186959 0.060773749 3.00E-14 13.52287875 -1.407337476 GFGLVAYAADS(ph)SDEEEEHGGHK ddPTM_HeLa_CUDC101_4h_R1 1 GFGLVAYAADSSDEEEEHGGHK 22 0 Q7Z7F0 Q7Z7F0 KIAA0907 UPF0469 protein KIAA0907 1 0 GFGLVAYAADS(0.5)S(0.5)DEEEEHGGHK 62.589 0.0091249 6639800 2971.6 3456.6 2287.8 2926 2837.3 3234.3 2459.4 1772.5 2990.9 3486.4 TRUE FALSE FALSE 2623.273553 3563.093749 2411.485388 3045.334927 2627.998032 3172.611116 2554.259882 1974.274235 2867.613836 3465.662738 0.756932729 1.028113241 0.695822292 0.87871647 0.758295954 0.915441391 0.737019172 0.569667156 0.82743592 1 11.75891555 -13.52287875 0.154308851 1.749902152 0.719691451 0.158530364 0.123403602 58.19120326 0.606606356 13.43112776 0.243737708 3.00E-14 13.52287875 -1.030210701 GGLS(ph)PANDTGAK ddPTM_HeLa_CUDC101_4h_R1 5 GGLSPANDTGAK 12 0 K7EN42;B7Z8J4;P30419 K7EN42 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 1 0 GGLS(1)PANDTGAK;GGLS(1)PANDTGAK;GGLS(1)PANDTGAK;GGLS(0.998)PANDT(0.002)GAK;GGLS(1)PANDTGAK ;;;; 195.94 3.94E-16 6323541300 28164.8 25045 26574.4 24341.5 25988.3 25360.4 22256.2 22076.1 27456.8 28779.3 TRUE FALSE FALSE 24863.36484 25816.60676 28011.09245 25334.25158 24071.19488 24876.69262 23114.62909 24589.15399 26325.01908 28608.11944 0.869101686 0.902422364 0.979130855 0.885561584 0.841411297 0.86956756 0.807974433 0.859516615 0.920193973 1 14.80413704 -13.52287875 0.1417346 1.447310311 0.822992009 0.392617376 0.044004404 38.41754291 0.377502797 4.848294136 0.117388282 3.00E-14 13.52287875 -0.624318302 (ac)AGGK(ac)AGK(ac)DSGK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 2 AGGKAGKDSGKAK 13 3 P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;Q71UI9-5 P0C0S5;Q71UI9 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V;Histone H2A 0 3 ; AGGK(1)AGK(1)DSGK(1)AK;AGGK(1)AGK(1)DSGK(1)AK 61.435 2.61E-07 20971100 3578.4 6140.1 9850.6 10246.4 11492.8 11151.5 10605.6 10787.6 487.27 435.7 FALSE TRUE FALSE 3158.945377 6329.269203 10383.15323 10664.29248 10644.99904 10938.80372 11014.66154 12015.61678 467.1845244 433.108437 7.293659293 14.61359018 23.97356492 24.62268469 24.57813825 25.2565011 25.43164853 27.74274466 1.078677958 1 8.758584466 -7.090423581 1.061410997 2.934419576 26.05755951 0.978330434 1.490421006 0.051830349 0.114121679 0.371626722 0.480638069 8.12E-08 7.090423581 23.12313993 (ac)AGPLPDEQDFIQAYEEVR ddPTM_HeLa_CUDC101_4h_R1 1 AGPLPDEQDFIQAYEEVR 18 0 Q15149-9 Q15149-9 PLEC Plectin 0 0 200.44 3.32E-24 3307200 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 GIGLDESELDS(ph)EAELMR ddPTM_HeLa_CUDC101_4h_R1 4 GIGLDESELDSEAELMR 17 0 Q96RS0 Q96RS0 TGS1 Trimethylguanosine synthase 1 0 GIGLDESELDS(1)EAELMR;GIGLDESELDS(1)EAELMR;GIGLDES(0.489)ELDS(0.511)EAELMR;GIGLDES(0.001)ELDS(0.999)EAELMR ;;; 278.19 1.77E-86 48219400 6771.79 6220.64 5234.42 5051.85 6663.78 6661.23 5726.2 5605.4 6074.53 5501.03 TRUE FALSE FALSE 5978.011042 6412.290545 5517.408578 5257.886279 6172.206226 6534.178136 5947.061452 6243.496078 5824.135302 5468.309629 1.09321005 1.172627554 1.008978817 0.961519489 1.128722886 1.194917366 1.087550241 1.141759795 1.065070506 1 12.41687922 -13.52287875 0.123777476 0.666353529 1.14935154 0.135070683 0.068097627 97.41797064 0.865014438 8.129798175 0.30079546 3.00E-14 13.52287875 0.482998011 (ac)AGTVVLDDVELR ddPTM_HeLa_CUDC101_4h_R1 2 AGTVVLDDVELR 12 0 P25205 P25205 MCM3 DNA replication licensing factor MCM3 0 0 ; ; 132.88 5.02E-23 6565600 503.26 110.54 42.781 99.573 290.78 114.19 90.969 276.22 262.29 165.14 FALSE FALSE TRUE 444.2686257 113.9456064 45.09387027 103.6340173 269.3297387 112.012016 94.4777048 307.6637683 251.4782952 164.1577399 2.706351987 0.694122656 0.274698411 0.63130753 1.640676454 0.6823438 0.575530004 1.874195931 1.531930784 1 7.358938963 -7.225690862 24.88551464 1.805777509 0.881660694 0.281773315 0.607966241 599.5716023 417378.6006 0.12720408 0.155789637 5.95E-08 7.225690862 -0.924116815 GLTPS(ph)QIGVILR ddPTM_HeLa_CUDC101_4h_R1 1 GLTPSQIGVILR 12 0 J3KMX5;P62277 J3KMX5 RPS13 40S ribosomal protein S13 1 0 GLT(0.024)PS(0.976)QIGVILR 94.673 0.0021842 0 1194.2 1167.3 982.84 973.56 1247.3 852.24 893.71 752.71 1235.2 1742.1 TRUE FALSE FALSE 1054.217686 1203.263129 1035.975303 1013.265985 1155.289164 835.9849419 928.1806941 838.3954638 1184.284533 1731.737912 0.608762838 0.694829813 0.598228691 0.58511509 0.667127027 0.482743339 0.535982199 0.484135306 0.683870536 1 10.75800489 -13.52287875 0.174801537 2.787826756 0.473285961 0.363997964 0.112921909 10.78837519 0.121719597 6.540633584 0.075282516 3.00E-14 13.52287875 -2.314540795 GS(ph)SPLPTATTPKPLIPTEASIR ddPTM_HeLa_CUDC101_4h_R1 1 GSSPLPTATTPKPLIPTEASIR 22 1 Q9BUK6-2;Q9BUK6;A0A3B3IUD2;Q9BUK6-7;Q9BUK6-3 Q9BUK6-2 MSTO1 Protein misato homolog 1 1 0 GS(0.536)S(0.435)PLPT(0.028)AT(0.001)TPKPLIPTEASIR 100.04 8.75E-05 36135000 998.24 954.2 1046.6 958.11 1172.6 961.51 716.51 579.28 1140.6 1374.1 TRUE FALSE FALSE 881.2278204 983.597771 1103.182362 997.1858671 1086.099634 943.1707987 744.1460307 645.2228937 1093.583985 1365.926792 0.64515011 0.720095525 0.807643842 0.73004342 0.795137514 0.690498791 0.544792031 0.47237004 0.800616835 1 10.41566445 -13.52287875 0.194225864 2.474394727 0.607311491 0.397170194 0.108924519 27.09694107 0.324142939 15.1867351 0.115367911 3.00E-14 13.52287875 -1.867083237 (ac)AK(ac)HHPDLIFCR ddPTM_HeLa_CUDC101_4h_R1 2 AKHHPDLIFCR 11 1 Q7RTV0 Q7RTV0 PHF5A PHD finger-like domain-containing protein 5A 0 1 ; AK(1)HHPDLIFCR;AK(1)HHPDLIFCR 79.659 0.00042853 9890900 109.91 105.98 134.21 212.312 315.95 267.52 0 126.81 291.41 196.552 FALSE TRUE FALSE 97.02651641 109.2451182 141.4657986 220.9710011 292.642998 262.4175017 0 141.2455378 279.3979565 195.3829 0.496596767 0.559133467 0.724043909 1.130963872 1.497792274 1.343093494 0 0.72291658 1.430002096 1 7.610160397 -6.311622585 23.44181029 0.735168273 0.940288301 0 0.456264259 500.6686195 233873.5025 0.068739361 0.105001283 4.88E-07 6.311622585 0.205120029 (ac)AK(ac)ISSPTETER ddPTM_HeLa_CUDC101_4h_R1 2 AKISSPTETER 11 1 P31949 P31949 S100A11 "Protein S100-A11;Protein S100-A11, N-terminally processed" 0 1 ; AK(1)ISSPTETER;AK(1)ISSPTETER 72.096 6.59E-05 20129600 0 66.152 0 243.319 221.96 288.52 192.303 202.716 0 117.3 FALSE TRUE FALSE 0 68.19006471 0 253.2426005 205.586453 283.0169617 199.7201911 225.79237 0 116.6022944 0 0.584808945 0 2.171849207 1.763142433 2.427198909 1.712832429 1.936431622 0 1 6.865452367 -6.254204636 24.94874038 0.484982628 1.996529925 0.838988387 0.365460201 205.6725053 709253.3796 0.065008189 0.106359885 5.57E-07 6.254204636 1.511547297 GSEEDPLLS(ph)PVETWK ddPTM_HeLa_CUDC101_4h_R1 2 GSEEDPLLSPVETWK 15 0 H0YK04;Q13017-2;Q13017;A0A0A0MSK6 H0YK04 ARHGAP5 Rho GTPase-activating protein 5 1 0 GSEEDPLLS(0.972)PVET(0.028)WK;GSEEDPLLS(0.999)PVET(0.001)WK ; 183.31 1.09E-10 15092700 5574 4593.8 4382.8 4299.6 4964.2 4953.9 4544.7 2929.4 4525.8 5815.8 TRUE FALSE FALSE 4920.62417 4735.329533 4619.747425 4474.956272 4598.000856 4859.412611 4719.990601 3262.871055 4339.244608 5781.207363 0.851141269 0.819090068 0.79909734 0.774052199 0.795335743 0.840553245 0.816436828 0.564392669 0.750577576 1 12.49715511 -13.52287875 0.035016453 2.257937837 1.87E-10 0.062434916 0.098523299 344.4790505 0.965934546 50.65235317 18.89839432 3.00E-14 13.52287875 -2.257937837 GVPAGNS(ph)DTEGGQPGRK ddPTM_HeLa_CUDC101_4h_R1 3 GVPAGNSDTEGGQPGRK 17 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 GVPAGNS(0.987)DT(0.013)EGGQPGRK;GVPAGNS(0.791)DT(0.209)EGGQPGRK;GVPAGNS(0.995)DT(0.005)EGGQPGRK ;; 203.06 1.21E-16 120345000 7754.7 7040 7384.3 7034.7 7494.1 6674.3 7014.6 5703.25 7897.6 7945.2 TRUE FALSE FALSE 6845.705821 7256.894056 7783.517594 7321.605473 6941.275173 6546.998848 7285.155472 6352.484927 7572.057585 7897.941597 0.866770884 0.918833593 0.985512174 0.927027047 0.878871423 0.82895002 0.92241192 0.804321588 0.958738108 1 12.94726098 -13.52287875 0.239621702 1.643349578 0.876370249 0.352469735 0.049123793 35.84057263 0.467992798 10.91643408 0.033221961 3.00E-14 13.52287875 -0.766979329 GYES(ph)PTLSK ddPTM_HeLa_CUDC101_4h_R1 1 GYESPTLSK 9 0 Q68DQ2 Q68DQ2 CRYBG3 Very large A-kinase anchor protein 1 0 GYES(0.999)PT(0.001)LSK 107.11 0.011656 20212000 3504.5 3042.5 3299.4 3478.1 3284 3307.3 2738.5 2420 3505.9 4218.2 TRUE FALSE FALSE 3093.707822 3136.235819 3477.775544 3619.951952 3041.745863 3244.218763 2844.124862 2695.483018 3361.385318 4193.109959 0.737807463 0.747949815 0.829402419 0.863309569 0.725415239 0.773702287 0.678285304 0.642836235 0.801644925 1 12.03380495 -13.52287875 0.210493179 2.267248789 0.707624114 0.218522277 0.085359127 20.2899812 0.252264656 10.56240822 0.057310149 3.00E-14 13.52287875 -1.559624675 (ac)ALDGPEQMELEEGK ddPTM_HeLa_CUDC101_4h_R1 3 ALDGPEQMELEEGK 14 0 P62195;J3QQM1;J3KTQ9;J3QSE0 P62195 PSMC5 26S protease regulatory subunit 8 0 0 ;; ;; 175.91 3.33E-55 38026700 15559.9 14357.2 12931.9 12691.5 14629.5 14076.3 13203.9 12785.2 14834.7 14853.6 FALSE FALSE TRUE 13735.99211 14799.52831 13631.03763 13209.11423 13550.31093 13807.81803 13713.17885 14240.61549 14223.20739 14765.25013 0.930291867 1.002321545 0.923183659 0.894608226 0.917716315 0.935156392 0.928746803 0.964468286 0.963289295 1 13.84991818 -9.91564371 0.389104239 1.04034827 0.930814253 0.237495059 0.029420718 2.867370887 0.389998179 0.138649795 0.00936773 1.21E-10 9.91564371 -0.109534017 (ac)ALNGAEVDDFSWEPPTEAETK ddPTM_HeLa_CUDC101_4h_R1 1 ALNGAEVDDFSWEPPTEAETK 21 0 E9PK41;O60232 E9PK41 SSSCA1 Sjoegren syndrome/scleroderma autoantigen 1 0 0 132.31 2.55E-18 3534300 4334.9 4369.6 3429 3529.7 5057.8 4391 4041.5 4303.3 3907.2 4310.3 FALSE FALSE TRUE 3826.769593 4504.222197 3614.382112 3673.656423 4684.696171 4307.248991 4197.382009 4793.170277 3746.143562 4284.662144 0.893132169 1.051243259 0.843562921 0.857396989 1.093364194 1.005271558 0.979629634 1.118681034 0.874314809 1 12.06496573 -5.749533786 24.9935134 0.94224572 1.041124311 0.410318766 0.07279524 220.9277403 463792.4917 0.010673468 0.021210555 1.78E-06 5.749533786 0.098878591 PAPEAS(ph)SLEEPHSPETGEK ddPTM_HeLa_CUDC101_4h_R1 1 PAPEASSLEEPHSPETGEK 19 0 Q5JTC6;Q5JTC6-2 Q5JTC6 AMER1 APC membrane recruitment protein 1 1 0 PAPEAS(0.64)S(0.012)LEEPHS(0.253)PET(0.094)GEK 57.39 0.025346 7229400 858.99 553.22 620.79 706.94 739.04 589.21 480.24 512.66 1142.9 1292 TRUE FALSE FALSE 758.3004943 570.2640525 654.3517852 735.7720689 684.5224916 577.9718009 498.7630177 571.0191422 1095.789178 1284.315127 0.590431802 0.444021908 0.509494727 0.572890604 0.532986397 0.450023354 0.388349407 0.444609839 0.853208964 1 10.32678352 -9.090279914 0.36326756 1.166311499 0.436099982 0.868059835 0.06783942 0.446510968 0.085464864 0.130812024 0.024173906 8.12E-10 9.090279914 -0.730211517 GYGFVDFDS(ph)PSAAQK ddPTM_HeLa_CUDC101_4h_R1 2 GYGFVDFDSPSAAQK 15 0 F8W1T6;Q15434 F8W1T6 RBMS2 "RNA-binding motif, single-stranded-interacting protein 2" 1 0 GYGFVDFDS(1)PSAAQK;GYGFVDFDS(0.974)PS(0.026)AAQK ; 179.55 8.83E-08 97415000 10092.5 8940.7 8435.4 8289.7 9443.7 9196.7 8342.7 7832.4 10032.1 9553.1 TRUE FALSE FALSE 8909.472449 9216.15237 8891.44324 8627.789797 8747.057066 9021.28827 8664.480734 8724.008756 9618.572592 9496.277736 0.938206811 0.970501561 0.936308255 0.908544383 0.921103753 0.949981511 0.912408101 0.918676665 1.012878189 1 13.21314641 -13.52287875 0.153000891 1.267469606 0.907727985 0.798729377 0.015573313 23.1576329 0.240021507 1.8470486 0.03452822 3.00E-14 13.52287875 -0.359741621 IHPMAYQLQLQAASNFKS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 IHPMAYQLQLQAASNFKSPVK 21 1 Q5SRQ6;P67870 Q5SRQ6 CSNK2B Casein kinase II subunit beta 1 0 IHPMAYQLQLQAAS(0.177)NFKS(0.822)PVK;IHPMAYQLQLQAAS(0.429)NFKS(0.571)PVK ; 54.974 0.01706 275950000 9272.9 7721.9 8621.7 8442.6 9245.6 8078.1 6961.1 7179.6 9055.3 10324.8 TRUE FALSE FALSE 8185.944719 7959.802586 9087.815181 8786.92572 8563.570508 7924.023702 7229.591959 7996.896643 8682.036701 10263.38763 0.797587016 0.775553148 0.885459607 0.856142829 0.8343805 0.772067078 0.704406013 0.77916736 0.845923102 1 13.32521938 -13.52287875 0.200375057 1.966479052 0.761302181 0.230464796 0.067048192 20.77290157 0.252405845 7.828945727 0.052306676 3.00E-14 13.52287875 -1.205176872 IPCES(ph)PPLEVVDTTASTK ddPTM_HeLa_CUDC101_4h_R1 2 IPCESPPLEVVDTTASTK 18 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IPCES(1)PPLEVVDTTASTK;IPCES(1)PPLEVVDTTASTK ; 126.84 7.37E-05 27089000 2420.5 2096.13 2943.9 2185.93 2087.96 2114.2 2096.18 1082.71 2237.97 3398 TRUE FALSE FALSE 2136.772659 2160.709281 3103.056139 2275.081674 1933.935351 2073.875157 2177.030365 1205.96133 2145.719929 3377.788545 0.632595152 0.63968163 0.918665007 0.67354177 0.572544825 0.613974241 0.644513514 0.357026887 0.635244007 1 11.7218633 -13.52287875 0.137095519 2.289293349 0.475050594 0.129328558 0.157662144 38.99044871 0.373998799 13.74686529 0.370858294 3.00E-14 13.52287875 -1.814242755 (ac)AQDQGEK(ac)ENPMR ddPTM_HeLa_CUDC101_4h_R1 1 AQDQGEKENPMR 12 1 P62913 P62913 RPL11 60S ribosomal protein L11 0 1 AQDQGEK(1)ENPMR 44.425 0.006749 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 IPCKS(ph)SPELEDTATSSK ddPTM_HeLa_CUDC101_4h_R1 2 IPCKSSPELEDTATSSK 17 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IPCKS(0.573)S(0.427)PELEDTATSSK;IPCKS(0.992)S(0.008)PELEDTATSSK ; 80.361 0.006865 64742200 2644.1 2482.46 2943.4 2725.3 2628.4 2440.12 2203.61 1522.29 2877.8 3884.7 TRUE FALSE FALSE 2334.162606 2558.94165 3102.529107 2836.449514 2434.508169 2393.578777 2288.603976 1695.58134 2759.175866 3861.593632 0.604455784 0.662664665 0.803432314 0.734528224 0.630441315 0.619842222 0.592657901 0.439088496 0.714517406 1 11.91498064 -13.52287875 0.217571233 2.912995651 0.57832913 0.24143784 0.123032803 20.10195436 0.253488267 16.37035859 0.076964523 3.00E-14 13.52287875 -2.334666522 IPSTENSSQEISVEERT(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 3 IPSTENSSQEISVEERTPTK 20 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 IPS(0.001)T(0.001)ENS(0.005)S(0.006)QEIS(0.009)VEERT(0.662)PT(0.317)K;IPSTENSS(0.001)QEIS(0.097)VEERT(0.72)PT(0.182)K;IPSTENS(0.009)S(0.009)QEIS(0.003)VEERT(0.725)PT(0.254)K ;; 79.021 0.0050361 188012000 4065.14 3624.7 3362.64 3533.48 4308.83 3547.82 3166.11 3040.12 4107.54 4452.24 TRUE FALSE FALSE 3588.630452 3736.372711 3544.43449 3677.590587 3990.976195 3480.151245 3288.227923 3386.194972 3938.225463 4425.757878 0.810851056 0.84423342 0.800864979 0.830951599 0.901761078 0.786340179 0.742975105 0.76511076 0.88984205 1 12.11170881 -13.52287875 0.202569246 1.9300637 0.775352117 0.463599183 0.052919194 18.18151175 0.222084459 6.660320516 0.042521075 3.00E-14 13.52287875 -1.154711584 IT(ph)KPGSIDSNNQLFAPGGR ddPTM_HeLa_CUDC101_4h_R1 1 ITKPGSIDSNNQLFAPGGR 19 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 IT(0.83)KPGS(0.169)IDS(0.001)NNQLFAPGGR 67.645 0.0193 24301000 1156.8 1270.2 1086.1 1254.1 1313.9 1046 844.57 707.58 1120.7 1549.4 TRUE FALSE FALSE 1021.201658 1309.333356 1144.817851 1305.247619 1216.976215 1026.049293 877.1453478 788.1280471 1074.504272 1540.1841 0.663038696 0.850114838 0.743299357 0.847462079 0.790149836 0.666186135 0.569506819 0.511710287 0.697646646 1 10.58888709 -13.52287875 0.138329003 2.007402421 0.575628367 0.151071824 0.126257693 44.40231028 0.428706915 12.48565143 0.327255012 3.00E-14 13.52287875 -1.431774054 KAEQGS(ph)EEEGEGEEEEEEGGESK ddPTM_HeLa_CUDC101_4h_R1 7 KAEQGSEEEGEGEEEEEEGGESK 23 1 Q8NE71;Q5STZ8 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK;KAEQGS(1)EEEGEGEEEEEEGGESK ;;;;;; 112.35 3.47E-06 1258570800 25412.2 21688.6 23212.7 21243.8 20802.6 22645.7 22052.4 17765.1 21356.9 26320.3 TRUE FALSE FALSE 22433.42044 22356.80006 24467.64878 22110.21399 19268.03364 22213.771 22902.96846 19787.40717 20476.55954 26163.74569 0.857423884 0.854495389 0.935173773 0.845070666 0.736440182 0.849028701 0.875370397 0.756291068 0.782631042 1 14.67528148 -13.52287875 0.146663876 1.609915709 0.779005468 0 0.084295852 33.02848679 0.332504453 5.77960138 0.124877239 3.00E-14 13.52287875 -0.830910241 (ac)AQVAMSTLPVEDEESSESR ddPTM_HeLa_CUDC101_4h_R1 2 AQVAMSTLPVEDEESSESR 19 0 P78347-2;P78347-4;P78347-3;P78347;P78347-5;C9J6M0 P78347-2 GTF2I General transcription factor II-I 0 0 ; ; 207.97 7.59E-44 6109300 130.12 0 0 118.06 0 62.543 138.39 56.626 0 59.383 FALSE FALSE TRUE 114.8675308 0 0 122.8749971 0 61.35009648 143.7277487 63.07207495 0 59.02978728 1.945924865 0 0 2.081576146 0 1.03930743 2.434834264 1.068478778 0 1 5.883371238 KAVS(ph)PLLLTTTNSSEGLSMGNYIGLINR ddPTM_HeLa_CUDC101_4h_R1 2 KAVSPLLLTTTNSSEGLSMGNYIGLINR 28 1 C9JZT2;P19525-2;P19525 C9JZT2 EIF2AK2 "Interferon-induced, double-stranded RNA-activated protein kinase" 1 0 KAVS(0.62)PLLLT(0.106)T(0.106)T(0.106)NS(0.024)S(0.024)EGLS(0.013)MGNY(0.001)IGLINR;KAVS(0.996)PLLLT(0.002)T(0.001)TNSSEGLSMGNYIGLINR ; 59.434 0.0016247 22505000 2007.71 2026.39 1284.48 1644.11 2157.35 1573.7 1588.85 1398.07 2018.09 2273.18 TRUE FALSE FALSE 1772.369277 2088.820674 1353.922874 1711.163912 1998.206589 1543.684294 1650.132477 1557.220638 1934.903476 2259.659024 0.784352532 0.924396403 0.599171317 0.757266426 0.884295625 0.683149218 0.730257291 0.689139654 0.856281171 1 11.14188938 -13.52287875 0.156001037 1.965884683 0.675604811 0.323584968 0.096656797 33.67115041 0.353570929 9.865099681 0.172301346 3.00E-14 13.52287875 -1.290279872 KMS(ph)GGSTMSSGGGNTNNSNSK ddPTM_HeLa_CUDC101_4h_R1 3 KMSGGSTMSSGGGNTNNSNSK 21 1 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 KMS(0.441)GGS(0.191)T(0.353)MS(0.007)S(0.007)GGGNTNNSNSK;KMS(0.997)GGS(0.003)TMSSGGGNTNNSNSK;KMS(0.996)GGS(0.003)T(0.002)MSSGGGNTNNSNSK ;; 181.03 2.47E-13 214573000 9103.7 8056.88 7852.04 7885.5 8309.7 7047.7 7720.6 7105.81 8298.61 9018.4 TRUE FALSE FALSE 8036.578086 8305.102923 8276.545034 8207.104774 7696.709986 6913.276865 8018.386128 7914.706688 7956.537783 8964.758156 0.896463457 0.92641684 0.923231267 0.915485352 0.858551882 0.771161558 0.894434182 0.882868958 0.887535129 1 13.13004895 -13.52287875 0.118781456 1.418403898 0.813397811 0.11385799 0.051641211 47.761652 0.410604322 4.768785199 0.199054685 3.00E-14 13.52287875 -0.605006087 KPSPQPSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 KPSPQPSSPR 10 1 G3V5E1;O75909-1;O75909;O75909-4 G3V5E1 CCNK Cyclin-K 1 0 KPSPQPS(0.063)S(0.937)PR 68.033 0.036962 49052000 6596.9 3088.9 8019.4 7855.8 5191.4 3945.8 5929.7 2629.1 6871.6 8658.3 TRUE FALSE FALSE 5823.621382 3184.065348 8452.953021 8176.19348 4808.440765 3870.540439 6158.410515 2928.386117 6588.34974 8606.800047 0.676630263 0.369947638 0.982124945 0.949969029 0.55867927 0.449707257 0.715528475 0.340240984 0.76548191 1 13.07126124 -13.52287875 0.100217584 2.208798517 0.362549727 0.20951214 0.209354465 105.0338147 0.785392106 26.74535434 1.765389543 3.00E-14 13.52287875 -1.84624879 KRESESESDET(ph)PPAAPQLIK ddPTM_HeLa_CUDC101_4h_R1 1 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 KRES(0.181)ES(0.05)ES(0.181)DET(0.589)PPAAPQLIK 66.383 0.036956 43866000 2477.7 2372.7 2788.5 2323.3 2437.1 2330.2 1910.2 1710.2 3287.8 3097.3 TRUE FALSE FALSE 2187.267762 2445.800075 2939.254745 2418.054216 2257.319988 2285.755317 1983.877054 1904.882255 3152.275492 3078.877122 0.710410866 0.794380541 0.954651527 0.78536886 0.73316339 0.742399007 0.644350838 0.618693822 1.023839331 1 11.58818858 -13.52287875 0.17989723 2.058608769 0.680281886 0.658533478 0.079945446 32.7584063 0.375849096 12.27049544 0.126460209 3.00E-14 13.52287875 -1.378326883 KSS(ph)PEMEDAR ddPTM_HeLa_CUDC101_4h_R1 2 KSSPEMEDAR 10 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 KS(0.026)S(0.974)PEMEDAR;KS(0.207)S(0.793)PEMEDAR ; 134.04 0.0038151 101711000 7224.5 5131.7 6936.9 7590 6583.7 5748.5 6489.9 4830.7 6833.5 7343.5 TRUE FALSE FALSE 6377.655062 5289.801594 7311.929797 7899.553007 6098.033568 5638.85694 6740.217617 5380.607362 6551.820238 7299.820535 0.873672857 0.72464817 1.001658844 1.082157153 0.835367601 0.772465147 0.923340181 0.737087622 0.897531687 1 12.83364528 -13.52287875 0.15855933 1.485255522 0.831622638 0.060397217 0.110596544 87.91407777 0.933142547 13.31334223 0.219505482 3.00E-14 13.52287875 -0.653632884 KSST(ph)PLSEAK ddPTM_HeLa_CUDC101_4h_R1 1 KSSTPLSEAK 10 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KSST(0.879)PLS(0.121)EAK 155.86 0.00046651 16700000 3152.4 2400.7 3507.8 3272.5 2856.4 3007.6 2516.4 1439.1 3685.6 4068.4 TRUE FALSE FALSE 2782.880451 2474.662721 3697.442279 3405.966695 2645.689063 2950.235041 2613.458391 1602.921327 3533.678008 4044.200976 0.68811626 0.611903992 0.914257798 0.84218532 0.65419327 0.729497633 0.646223669 0.396350561 0.873764194 1 11.98163898 -13.52287875 0.111492871 2.006551171 0.495766238 0.455889678 0.123336513 66.86810163 0.546337901 15.56443853 0.776258656 3.00E-14 13.52287875 -1.510784933 LAEDEGDS(ph)EPEAVGQSR ddPTM_HeLa_CUDC101_4h_R1 2 LAEDEGDSEPEAVGQSR 17 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 LAEDEGDS(1)EPEAVGQSR;LAEDEGDS(1)EPEAVGQSR ; 115.38 0.00058663 731040000 5298.2 4248.5 5584.6 4251.1 4937.8 4379.7 4093.4 4264.9 5001.8 6203.7 TRUE FALSE FALSE 4677.153028 4379.391249 5886.520368 4424.478233 4573.548331 4296.16452 4251.283809 4750.398977 4795.623687 6166.800116 0.758440835 0.710156186 0.954550214 0.71746743 0.741640437 0.696660251 0.689382456 0.770318299 0.777651877 1 12.59030637 -13.52287875 0.199968397 2.20173716 0.705845004 0.03702583 0.100469505 22.94413001 0.278511122 10.70447369 0.072125291 3.00E-14 13.52287875 -1.495892156 LAES(ph)PQLSK ddPTM_HeLa_CUDC101_4h_R1 1 LAESPQLSK 9 0 Q96A19 Q96A19 CCDC102A Coiled-coil domain-containing protein 102A 1 0 LAES(0.988)PQLS(0.012)K 101.35 0.0021723 0 2126.3 2086.2 1749 1876.6 2009.5 1875.6 1772.2 1643.8 2104.6 2188.7 TRUE FALSE FALSE 1877.058337 2150.473349 1843.55623 1953.135859 1861.263188 1839.826055 1840.554348 1830.923548 2017.847497 2175.681515 0.862744995 0.988413669 0.847346552 0.897712209 0.855485132 0.845632066 0.845966809 0.841540241 0.927455367 1 11.08725167 -13.52287875 0.169639052 1.522631875 0.833902863 0.436225712 0.043290679 27.6452513 0.3063082 4.800862644 0.061870095 3.00E-14 13.52287875 -0.688729012 LDDSNIPPPS(ph)LK ddPTM_HeLa_CUDC101_4h_R1 1 LDDSNIPPPSLK 12 0 A0A0A0MQZ3;A0A5F9ZH43;A4UGR9-2;A4UGR9-3;A4UGR9;A4UGR9-8 A0A0A0MQZ3 XIRP2 Xin actin-binding repeat-containing protein 2 1 0 LDDSNIPPPS(1)LK 85.676 0.027144 17827000 2355.1 2048.8 1763.3 1920.9 1915.9 2129 1819.8 1358.5 1810.1 2791.4 TRUE FALSE FALSE 2079.038748 2111.9211 1858.629332 1999.242605 1774.567874 2088.392872 1889.990296 1513.146149 1735.486912 2774.796629 0.749258063 0.761108428 0.669825425 0.720500589 0.639530788 0.752629166 0.681127502 0.545317856 0.625446526 1 11.43816632 -13.52287875 0.14034766 2.160861696 0.56697125 0 0.129254415 16.87246967 0.164625403 5.372952295 0.134352874 3.00E-14 13.52287875 -1.593890446 LDNVPHT(ph)PSSYIETLPK ddPTM_HeLa_CUDC101_4h_R1 1 LDNVPHTPSSYIETLPK 17 0 Q99733;Q99733-2;E9PNJ7;C9J6D1;A8MXH2;E9PS34;E9PNW0;E9PJJ2;E9PP22;E9PKI2 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 LDNVPHT(0.996)PS(0.003)S(0.001)YIETLPK 104.95 0.0024373 71541000 4299.2 3401.3 3238.6 3192.4 4672.9 4240.2 3617.5 2051.9 3531.5 4452.3 TRUE FALSE FALSE 3795.254293 3506.090021 3413.688512 3322.599871 4328.189477 4159.32525 3757.028187 2285.480002 3385.930075 4425.817522 0.857526158 0.79219037 0.771312531 0.750731329 0.97794124 0.939786882 0.848889085 0.516397251 0.765040596 1 12.11172825 -13.52287875 0.110709611 1.636029304 0.699954217 0 0.136786173 101.3225227 0.823096818 14.50318778 0.73740883 3.00E-14 13.52287875 -0.936075087 LKETCVSGEDPTQGADLS(ph)PDEK ddPTM_HeLa_CUDC101_4h_R1 2 LKETCVSGEDPTQGADLSPDEK 22 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 LKETCVSGEDPTQGADLS(1)PDEK;LKETCVSGEDPTQGADLS(1)PDEK ; 117.57 1.22E-06 106819000 11068.6 9797.7 9557.2 10057.2 9709.6 10080.4 9006.2 10254.9 10595 9123.8 TRUE FALSE FALSE 9771.155487 10099.55552 10073.89114 10467.37609 8993.342152 9888.133165 9353.572151 11422.27636 10158.26962 9069.531232 1.077360586 1.113569739 1.110740002 1.15412537 0.991599447 1.090258461 1.031318148 1.259411989 1.120043512 1 13.14681227 -13.52287875 0.147155303 0.621792977 1.133929082 0 0.07705634 69.15023105 0.697778325 7.488387331 0.159981198 3.00E-14 13.52287875 0.512136105 MLAES(ph)DES(ph)GDEESVSQTDKTELQNTLR ddPTM_HeLa_CUDC101_4h_R1 3 MLAESDESGDEESVSQTDKTELQNTLR 27 1 P22059 P22059 OSBP Oxysterol-binding protein 1 2 0 MLAES(0.95)DES(0.893)GDEES(0.119)VS(0.033)QT(0.005)DKT(0.001)ELQNTLR;MLAES(0.863)DES(0.863)GDEES(0.17)VS(0.068)QT(0.023)DKT(0.01)ELQNT(0.003)LR;MLAES(0.908)DES(0.728)GDEES(0.266)VS(0.093)QT(0.005)DKTELQNTLR ;; 49.871 0.020875 88983000 6287.7 5280.8 5372.2 4671.8 6264.1 5717.1 5354 5505.2 5378.5 4987.6 TRUE FALSE FALSE 5550.665338 5443.495189 5662.637382 4862.336197 5802.009823 5608.055843 5560.505573 6131.889715 5156.795953 4957.933533 1.119552188 1.097936298 1.142136607 0.98071831 1.170247601 1.131127678 1.121536934 1.236783364 1.040109941 1 12.27552322 -13.52287875 0.082931751 0.588724827 1.250513555 0.425549183 0.056154531 115.3068096 0.731213151 8.7870612 0.901698329 3.00E-14 13.52287875 0.661788727 MNYSITVSIVMGIPT(ph)VK ddPTM_HeLa_CUDC101_4h_R1 1 MNYSITVSIVMGIPTVK 17 0 Q9UM21-2 Q9UM21-2 1 0 MNYSITVSIVMGIPT(1)VK 61.165 0.024003 6043000 2688.5 2164.7 3130 2921.3 2438.2 2161.2 2345.4 1472.9 2799.7 3287.6 TRUE FALSE FALSE 2373.358106 2231.391841 3299.217268 3040.443241 2258.338844 2119.978711 2435.862864 1640.568982 2684.295181 3268.045209 0.726231724 0.682790995 1.009538442 0.930355318 0.691036598 0.648699322 0.745357762 0.502003148 0.821376391 1 11.67421223 -13.52287875 0.03951055 2.218036898 2.45E-13 0.316312276 0.128416159 548.6472473 1.730960323 83.9576373 27.65223657 3.00E-14 13.52287875 -2.218036898 MSGGS(ph)TMSSGGGNTNNSNSK ddPTM_HeLa_CUDC101_4h_R1 1 MSGGSTMSSGGGNTNNSNSK 20 0 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 MS(0.018)GGS(0.684)T(0.107)MS(0.174)S(0.017)GGGNTNNSNSK 90.707 0.0030368 1740500 622.51 537.29 449.27 612.64 496.3 538.95 538.72 321.85 721.94 714.42 TRUE FALSE FALSE 549.5403215 553.8432681 473.5588952 637.6261073 459.6889378 528.6704267 559.4986109 358.488103 692.1813276 710.1705981 0.773814521 0.779873554 0.666824136 0.897849206 0.647293677 0.744427365 0.787836912 0.50479153 0.974669086 1 9.472021822 -13.52287875 0.124502129 1.959960251 0.590477063 0.607375708 0.090294809 40.89693072 0.364788484 9.740860223 0.354187767 3.00E-14 13.52287875 -1.369483187 MSGGSTMS(ph)SGGGNTNNSNSK ddPTM_HeLa_CUDC101_4h_R1 1 MSGGSTMSSGGGNTNNSNSK 20 0 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 MS(0.005)GGS(0.026)T(0.171)MS(0.673)S(0.125)GGGNTNNSNSK 103.76 0.00068183 1756900 730.29 643.42 673.64 560.35 719.68 558.05 567.55 451.9 622.82 800.43 TRUE FALSE FALSE 644.6865132 663.2430076 710.059016 583.203495 666.5906402 547.406126 589.4405936 503.3424694 597.147096 795.6690068 0.810244596 0.833566473 0.89240502 0.732972492 0.837773791 0.687982215 0.740811303 0.632602835 0.750496866 1 9.636024593 -13.52287875 0.037428426 2.261767023 1.85E-16 0.209689629 0.089587977 233.1134898 0.697651201 35.41948342 12.35862597 3.00E-14 13.52287875 -2.261767023 MSPAS(ph)PIDDIER ddPTM_HeLa_CUDC101_4h_R1 2 MSPASPIDDIER 12 0 B4DWJ3;Q96CJ1-2;Q96CJ1 B4DWJ3 EAF2 ELL-associated factor 2 1 0 MS(0.002)PAS(0.998)PIDDIER;MS(0.004)PAS(0.996)PIDDIER ; 131.32 0.0015216 7916900 4092.9 4100.3 3569.5 3729.3 3858.3 3676.2 3248.66 3091.76 4543.3 4451.3 TRUE FALSE FALSE 3613.136466 4226.625383 3762.477967 3881.396973 3573.680896 3606.08261 3373.961904 3443.713461 4356.023251 4424.82347 0.816560591 0.955207685 0.850311429 0.877186853 0.807643722 0.814966435 0.762507686 0.778271378 0.984451308 1 12.11140418 -13.52287875 0.141383039 1.600808252 0.759419414 0.726881444 0.042828465 32.93103847 0.323014487 5.584333255 0.136317566 3.00E-14 13.52287875 -0.841388838 MYASVLLIT(ph)AMSLDR ddPTM_HeLa_CUDC101_4h_R1 1 MYASVLLITAMSLDR 15 0 G3V4Q5 G3V4Q5 LTB4R 1 0 MYASVLLIT(0.574)AMS(0.426)LDR 73.499 0.015786 36899000 1665.7 1530.6 1394.9 1294.2 1668.4 1600.8 1302.4 1085.2 2011.4 1938.3 TRUE FALSE FALSE 1470.449171 1577.755972 1470.312513 1346.98307 1545.325456 1570.267407 1352.634004 1208.734781 1928.489241 1926.770905 0.763167623 0.818860181 0.763096697 0.699088338 0.802028644 0.814973593 0.70202119 0.627337053 1.000891821 1 10.91196933 -13.52287875 0.180583906 2.092905566 0.690673478 0.812134108 0.050032791 18.5423208 0.213207072 7.100677948 0.072104284 3.00E-14 13.52287875 -1.402232088 (ac)ASEELQKDLEEVK ddPTM_HeLa_CUDC101_4h_R1 2 ASEELQKDLEEVK 13 1 Q9HB71;B2ZWH1;Q9HB71-2 Q9HB71 CACYBP Calcyclin-binding protein 0 0 ; ; 95.483 9.48E-11 26097000 2136.7 2047.49 2074.27 2124.83 2298.41 2063.34 2089.85 2159.85 2188.49 2144.47 FALSE FALSE TRUE 1886.239265 2110.57074 2186.411311 2211.489752 2128.860873 2023.985227 2170.456215 2405.718594 2098.279516 2131.714597 0.884846061 0.990081291 1.025658554 1.037423 0.998661301 0.949463512 1.018173923 1.128536905 0.984315405 1 11.05779858 -7.017415406 8.955943657 0.945176707 1.020607274 0.267055261 0.050679213 0.256119051 119.5147685 0.009723318 0.012206034 9.61E-08 7.017415406 0.075430567 NEMGIPQQTT(ph)SPENAGPQNTK ddPTM_HeLa_CUDC101_4h_R1 1 NEMGIPQQTTSPENAGPQNTK 21 0 Q15398-1;Q15398;Q15398-3 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 NEMGIPQQT(0.003)T(0.498)S(0.498)PENAGPQNTK 105.24 8.17E-05 10045000 1985.2 2076 1942.7 1624.5 2056.4 1908.1 1399.6 1488 2071.6 2264.6 TRUE FALSE FALSE 1752.497865 2139.959099 2047.728238 1690.754132 1904.703469 1871.706172 1453.583041 1657.387905 1986.207771 2251.130058 0.778496941 0.950615488 0.909644572 0.751069058 0.846109918 0.831451814 0.645712599 0.736247068 0.882315868 1 11.1364337 -13.52287875 0.068549712 1.675545133 0.531862008 0.438686018 0.076523466 151.9651733 0.810532893 17.04908359 2.5520944 3.00E-14 13.52287875 -1.143683125 PTLLANGGHGVEGSDTTGS(ph)PTEFLEEK ddPTM_HeLa_CUDC101_4h_R1 1 PTLLANGGHGVEGSDTTGSPTEFLEEK 27 0 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;H7C456;A0A0J9YW37 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 PTLLANGGHGVEGS(0.001)DT(0.206)T(0.035)GS(0.491)PT(0.267)EFLEEK 71.169 0.00020932 0 1339 1176.8 954 1054.6 1311.7 1037.4 1108.8 821.12 1484.5 1408 TRUE FALSE FALSE 1182.04445 1213.055813 1005.576126 1097.611146 1214.938504 1017.613323 1151.566787 914.5929817 1423.308282 1399.625153 0.844543589 0.866700495 0.718461027 0.784217934 0.868045634 0.727061329 0.822767999 0.653455662 1.016921051 1 10.45082478 -13.52287875 0.101558727 1.757455088 0.627186522 0.739732997 0.056625513 43.67973512 0.330305457 6.90133252 0.440465244 3.00E-14 13.52287875 -1.130268566 (ac)ASGVAVSDGVIK ddPTM_HeLa_CUDC101_4h_R1 2 ASGVAVSDGVIK 12 0 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 0 0 ; ; 94.409 4.62E-06 0 6493.7 5005.9 5594.6 5056.3 6601.7 7330.5 6811.6 4431.2 5336.7 5251.4 FALSE FALSE TRUE 5732.51833 5160.125846 5897.060999 5262.517769 6114.705743 7190.682926 7074.325694 4935.629896 5116.718967 5220.164439 1.098148994 0.988498716 1.129669586 1.008113409 1.171362668 1.377482072 1.355192116 0.945493184 0.980183484 1 12.34987954 -5.591453312 4.967386217 1.04762221 1.244493309 0.350704838 0.118674497 0.155343957 7.326247647 0.016230799 0.033286889 2.56E-06 5.591453312 0.196871099 QDTRS(ph)PTSAPTQR ddPTM_HeLa_CUDC101_4h_R1 1 QDTRSPTSAPTQR 13 1 F8VV64;Q63HR2-2;Q63HR2-6;Q63HR2;Q63HR2-4;Q63HR2-5;H0YID7 F8VV64 TNS2 Tensin-2 1 0 QDT(0.012)RS(0.952)PT(0.035)SAPTQR 86.777 0.012428 4889800 2614 2506.8 2486.9 2408.9 2815.5 2316 2093.6 2012.1 2580.1 2836.9 TRUE FALSE FALSE 2307.590883 2584.031537 2621.349336 2507.145354 2607.806174 2271.826159 2174.350853 2241.149331 2473.747186 2820.025993 0.818287097 0.916314794 0.929547934 0.889050442 0.924745439 0.805604688 0.771039295 0.79472648 0.877207229 1 11.46149274 -13.52287875 0.239784798 1.863760369 0.833408951 0.128390613 0.064825007 32.25176372 0.421219716 13.20870038 0.040071426 3.00E-14 13.52287875 -1.030351418 QGS(ph)PVEPK ddPTM_HeLa_CUDC101_4h_R1 1 QGSPVEPK 8 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 QGS(1)PVEPK 94.465 0.023911 37592000 6717.8 3673.3 7292.9 8564.1 6314.3 5075.2 6287.1 2640 7328.1 7977.7 TRUE FALSE FALSE 5930.349668 3786.470019 7687.176234 8913.381015 5848.506669 4978.399016 6529.595553 2940.526929 7026.032616 7930.248286 0.747813871 0.477471812 0.969348746 1.123972503 0.737493513 0.627773411 0.823378451 0.370798848 0.885978895 1 12.95315032 -13.52287875 0.039289834 2.222462311 1.09E-13 0.196562634 0.200537099 860.7515513 2.700864037 131.6096069 43.61252625 3.00E-14 13.52287875 -2.222462311 QGSIT(ph)SPQANEQSVTPQR ddPTM_HeLa_CUDC101_4h_R1 1 QGSITSPQANEQSVTPQR 18 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QGS(0.001)IT(0.538)S(0.451)PQANEQS(0.009)VTPQR 130.64 0.00030641 16397000 2283.6 2214.7 2219.6 2033.7 1990.4 2038.3 1859.6 1663.2 2506.6 2793.8 TRUE FALSE FALSE 2015.91987 2282.932282 2339.59829 2116.643076 1843.572157 1999.422824 1931.325395 1852.531965 2403.276887 2777.182353 0.725886749 0.822031826 0.842435963 0.762154878 0.66382827 0.719946539 0.695426209 0.667054492 0.865365173 1 11.43940619 -13.52287875 0.18675895 2.179466584 0.674487374 0.609649609 0.062939246 17.49435056 0.204969026 7.509614327 0.066807452 3.00E-14 13.52287875 -1.50497921 RAVVWSLAVGSKS(ph)GY(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 RAVVWSLAVGSKSGYK 16 2 Q9Y4P8;Q9Y4P8-6 Q9Y4P8 WIPI2 WD repeat domain phosphoinositide-interacting protein 2 2 0 RAVVWS(0.004)LAVGS(0.229)KS(0.904)GY(0.862)K 65.395 0.0029339 0 4598.9 4467.8 4294.6 3764 4844.9 4137.4 3846.6 3155 4503.4 5076.7 TRUE FALSE FALSE 4059.823913 4605.447622 4526.779066 3917.512189 4487.501379 4058.485988 3994.964651 3514.152447 4317.767946 5046.503563 0.804482522 0.912601679 0.897012954 0.776282458 0.889229805 0.804217403 0.791630205 0.696353902 0.855595937 1 12.30106846 -13.52287875 0.160200835 1.680921914 0.763177318 0.276194029 0.069267775 32.83916636 0.350916826 7.072349248 0.112389721 3.00E-14 13.52287875 -0.917744597 RDS(ph)PPPPAR ddPTM_HeLa_CUDC101_4h_R1 2 RDSPPPPAR 9 1 O96013;O96013-2;O96013-4;M0R2X4 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 RDS(1)PPPPAR;RDS(1)PPPPAR ; 108.68 0.02225 58556200 3287.2 1917.12 3518.3 3470.6 2978.2 2608.54 2932.1 1651.03 3692.4 3863.4 TRUE FALSE FALSE 2901.879399 1976.184195 3708.50994 3612.146069 2758.504119 2558.786446 3045.192079 1838.976582 3540.197709 3840.420325 0.755615051 0.514574976 0.965652097 0.940560085 0.718281825 0.666277706 0.792931977 0.478847737 0.921825584 1 11.9070485 -13.52287875 0.155707424 2.011577343 0.64949938 0.298176869 0.14683355 57.24518239 0.600360749 17.66411418 0.31057001 3.00E-14 13.52287875 -1.362077962 RPEVDS(ph)PGETPSWAPQPK ddPTM_HeLa_CUDC101_4h_R1 1 RPEVDSPGETPSWAPQPK 18 1 Q9BY89;A0A1B0GVJ7;Q9BY89-2 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 RPEVDS(0.99)PGET(0.01)PSWAPQPK 54.235 0.032042 6363800 1346.5 1002.5 1082.3 1197.2 1108.5 1233.4 1050.1 865.28 1136.7 1389.1 TRUE FALSE FALSE 1188.665311 1033.385837 1140.812412 1246.026991 1026.728163 1209.87495 1090.602709 963.7799776 1089.844745 1380.837571 0.860829207 0.7483761 0.826174226 0.902370428 0.743554626 0.876189188 0.789812452 0.697967667 0.789263536 1 10.43132791 -13.52287875 0.126758984 1.700875055 0.714728493 0 0.089216012 37.74540872 0.341372412 6.606756618 0.227594734 3.00E-14 13.52287875 -0.986146562 (ac)ATAEVLNIGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 ATAEVLNIGKK 11 1 E9PBS1;P22234;P22234-2 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 1 ATAEVLNIGK(1)K 88.37 7.71E-05 2739500 2391.1 2327.6 1832.9 1681.9 3338.7 2277.3 2497.3 1987.3 3030.7 2548.4 FALSE TRUE FALSE 2110.818883 2399.310597 1931.992118 1750.495152 3092.410753 2233.864297 2593.621698 2213.526199 2905.773263 2533.242003 0.83324802 0.947130434 0.762655962 0.69100984 1.220732464 0.881820329 1.023834949 0.873791843 1.147057115 1 11.30676919 -5.770178717 24.99812667 0.893971685 0.993299591 0.103397724 0.148193365 319.4332233 913713.8665 0.019316309 0.03540449 1.70E-06 5.770178717 0.099327907 RPQS(ph)PGAS(ph)PSQAER ddPTM_HeLa_CUDC101_4h_R1 2 RPQSPGASPSQAER 14 1 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 2 0 RPQS(1)PGAS(0.627)PS(0.373)QAER;RPQS(1)PGAS(0.991)PS(0.009)QAER ; 99.011 0.0043587 48057000 10067.1 8682.6 9594.3 9416.8 9150.1 8731.4 8176.1 7558.9 9250.3 10425.4 TRUE FALSE FALSE 8887.049799 8950.100615 10112.99688 9800.857807 8475.115353 8564.863093 8491.454916 8419.374622 8868.998719 10363.38926 0.857542796 0.863626792 0.975838756 0.945719355 0.817793788 0.826453864 0.81937045 0.812415168 0.855800984 1 13.33920828 -13.52287875 0.114907131 1.445762328 0.781622909 0.103222732 0.062942583 61.33833228 0.513544243 6.483458424 0.297393678 3.00E-14 13.52287875 -0.664139419 RPS(ph)PPEPWDEEDGASCSTFFGSEER ddPTM_HeLa_CUDC101_4h_R1 3 RPSPPEPWDEEDGASCSTFFGSEER 25 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 RPS(0.993)PPEPWDEEDGAS(0.006)CSTFFGSEER;RPS(1)PPEPWDEEDGASCSTFFGSEER;RPS(1)PPEPWDEEDGASCSTFFGSEER ;; 99.13 2.87E-06 27321100 3490.63 2984.65 2848.98 3073.11 3105.15 3189.8 3151.13 3153.86 3417.58 2661.19 TRUE FALSE FALSE 3081.463643 3076.603529 3003.004476 3198.444709 2876.089271 3128.95988 3272.67014 3512.882674 3276.705906 2645.361124 1.164855571 1.16301835 1.13519642 1.20907678 1.087219906 1.182810109 1.237135494 1.327940689 1.238661095 1 11.36924897 -13.52287875 0.073986864 0.338780883 1.418776423 0 0.086400255 87.17401336 0.498715986 9.823289424 1.273466549 3.00E-14 13.52287875 1.07999554 (ac)ATEEK(ac)KPETEAAR ddPTM_HeLa_CUDC101_4h_R1 2 ATEEKKPETEAAR 13 2 V9GYQ5;V9GZ59;P61964 V9GYQ5 WDR5 WD repeat-containing protein 5 0 1 ; ATEEK(0.963)K(0.037)PETEAAR;ATEEK(0.952)K(0.048)PETEAAR 82.831 2.18E-12 7015100 1713.27 1345.32 1514.22 1058.66 1321.56 1570.64 1627.36 1592.74 1427.55 1546.32 FALSE TRUE FALSE 1512.443088 1386.767715 1596.083313 1101.836731 1224.071152 1540.682659 1690.12782 1774.051084 1368.705785 1537.12242 0.983944459 0.9021843 1.038357969 0.716817813 0.796339404 1.002316171 1.099540153 1.154137797 0.890433818 1 10.58601635 -4.764543263 3.362712387 0.954817545 1.138024376 0.382245695 0.099835343 0.220932611 5.113200348 0.015036077 0.060686283 1.72E-05 4.764543263 0.18320683 RSYS(ph)PDGK ddPTM_HeLa_CUDC101_4h_R1 1 RSYSPDGK 8 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 RS(0.001)YS(0.999)PDGK 69.815 0.034945 2827500 3779.5 1203.2 3862.4 3837.3 2272.8 2045.1 2333.8 1092 4342.2 5837.4 TRUE FALSE FALSE 3336.472739 1240.269166 4071.213027 3993.80168 2105.140072 2006.093125 2423.815448 1216.308866 4163.212678 5802.678885 0.574988347 0.213740789 0.701609224 0.688268601 0.362787622 0.345718446 0.417706286 0.20961161 0.717463909 1 12.50250338 -13.52287875 0.12003863 2.988140665 0.138435648 0.475953387 0.175732893 38.1433296 0.330656536 18.14856215 0.734819622 3.00E-14 13.52287875 -2.849705018 RT(ph)YSDEANQMR ddPTM_HeLa_CUDC101_4h_R1 1 RTYSDEANQMR 11 1 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5;Q9BXF6 RAB11FIP5 Rab11 family-interacting protein 5 1 0 RT(0.952)YS(0.048)DEANQMR 120.53 0.019386 5333800 1236.5 1307.8 1090.7 1291.8 1216.5 1053 885.26 816.59 1604.5 1519.8 TRUE FALSE FALSE 1091.559344 1348.091768 1149.666541 1344.485188 1126.761219 1032.915779 919.4047747 909.5473048 1538.361831 1510.760162 0.722523251 0.892326791 0.760985476 0.889939529 0.745824021 0.683705995 0.608570968 0.602046127 1.018270053 1 10.56105893 -13.52287875 0.041427107 2.242513743 4.28E-16 0.733486422 0.073643934 304.1624506 1.00485305 48.21923457 15.06179705 3.00E-14 13.52287875 -2.242513743 S(ph)ASPDYNR ddPTM_HeLa_CUDC101_4h_R1 1 SASPDYNR 8 0 Q14669;Q14669-2;Q14669-3;G5E9G6;F8W9P3;C9JLJ5;C9JSX9;C9JLD7 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 S(0.643)AS(0.357)PDYNR 109.44 0.011859 42191000 7155.7 3894.4 8464 8289.6 5530.4 6224.3 5770.6 2656.8 7528.9 9947.7 TRUE FALSE FALSE 6316.919693 4014.381848 8921.589442 8627.685719 5122.43341 6105.581848 5993.173975 2959.239373 7218.555555 9888.530638 0.638812775 0.405963433 0.902215887 0.872494209 0.518017651 0.617440758 0.606073257 0.299259767 0.729992738 1 13.27154045 -13.52287875 0.143499244 2.404689697 0.463711345 0.224500807 0.185623241 50.29279828 0.498577696 20.02609228 0.465452465 3.00E-14 13.52287875 -1.940978351 (ac)ATVWDEAEQDGIGEEVLK ddPTM_HeLa_CUDC101_4h_R1 2 ATVWDEAEQDGIGEEVLK 18 0 E9PN50;R4GNH3 E9PN50 PSMC3 0 0 ; ; 218.62 6.09E-145 51576000 6320.4 5917.5 4838.8 4725 5901.9 5214 5344.4 5022.4 5489.2 5897.5 FALSE FALSE TRUE 5579.532293 6099.811161 5100.400165 4917.705923 5466.528595 5114.551637 5550.535298 5594.129715 5262.932853 5862.421408 0.951745346 1.040493465 0.870015956 0.838852341 0.932469404 0.872429885 0.946799098 0.954235345 0.897740453 1 12.51728096 -6.748895723 24.99989229 0.981322419 0.901588945 0.329905298 0.048231752 155.5906757 310096.096 0.006660698 0.009382998 1.78E-07 6.748895723 -0.079733474 (ac)AVADLALIPDVDIDSDGVFK ddPTM_HeLa_CUDC101_4h_R1 2 AVADLALIPDVDIDSDGVFK 20 0 Q9NRX4-2;Q9NRX4 Q9NRX4-2 PHPT1 14 kDa phosphohistidine phosphatase 0 0 ; ; 210.64 2.93E-104 113563000 3097.74 3307.54 2394.79 2483.54 2752.61 2748.12 2722.47 3043.6 3244.1 2875.37 FALSE FALSE TRUE 2734.627613 3409.441387 2524.259591 2584.829496 2549.555444 2695.70419 2827.47658 3390.071121 3110.376825 2858.267171 0.956743177 1.192835093 0.883143331 0.904334459 0.891993397 0.943125337 0.989227532 1.186058167 1.08820367 1 11.48092506 -4.264460824 4.644075587 0.973688237 1.198537236 0.305540067 0.090964391 0.152386084 8.793036587 0.011297913 0.110642507 5.44E-05 4.264460824 0.224848999 S(ph)ELEFETLK ddPTM_HeLa_CUDC101_4h_R1 2 SELEFETLK 9 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 S(1)ELEFETLK;S(1)ELEFETLK ; 186.87 5.13E-11 16906900 3588.2 3475.4 3183.2 2611.5 3121 3297.2 2938.2 1801.53 3628.2 4082.2 TRUE FALSE FALSE 3167.596635 3582.472955 3355.293421 2718.008258 2890.770048 3234.311404 3051.527358 2006.608893 3478.64406 4057.918893 0.78059634 0.882835032 0.826850785 0.669803495 0.712377483 0.797036976 0.751993186 0.494492114 0.857248297 1 11.98652431 -13.52287875 0.042039387 2.295750838 6.66E-13 0.55187699 0.086345183 262.1041719 0.878325405 42.86910333 13.16616402 3.00E-14 13.52287875 -2.295750838 (ac)CDFTEDQTAEFK ddPTM_HeLa_CUDC101_4h_R1 4 CDFTEDQTAEFK 12 0 P60660-2;G3V1Y7;F8W1R7;G3V1V0;P60660 P60660-2 MYL6 Myosin light polypeptide 6 0 0 ;;; ;;; 150.81 2.13E-23 122306000 23296.3 21647.2 20971.5 20198.3 23435 21128.9 21282 22146.5 21993.7 11522.8 FALSE FALSE TRUE 20565.54303 22314.12457 22105.28273 21022.07398 21706.24674 20725.90144 22102.85387 24667.56804 21087.11038 11454.26187 1.795449 1.948106724 1.929874048 1.835305864 1.89503671 1.80944889 1.929662 2.153571161 1.840983785 1 13.48359687 -9.041405807 0.489337554 0.841749876 1.95050965 0.088340411 0.275211385 0.247545979 0.091314592 0.130968568 0.026468164 9.09E-10 9.041405807 1.108759774 S(ph)LQLPASPAPDPSPR ddPTM_HeLa_CUDC101_4h_R1 2 SLQLPASPAPDPSPR 15 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(0.996)LQLPAS(0.004)PAPDPSPR;S(1)LQLPASPAPDPSPR ; 143.43 0.00036188 52898000 3278 3020.5 3006.5 2912.8 3243.7 3510.2 2596.91 1775.05 3073.6 3669.2 TRUE FALSE FALSE 2893.757809 3113.558025 3169.040484 3031.596574 3004.418713 3443.248783 2697.073689 1977.114517 2946.904907 3647.375435 0.793380846 0.853643416 0.868855028 0.831172066 0.823720718 0.944034648 0.739456011 0.542064987 0.807952173 1 11.83264299 -13.52287875 0.030221039 2.161560933 9.27E-14 0.240280508 0.101658212 862.3317518 2.092441414 114.0294925 48.62970537 3.00E-14 13.52287875 -2.161560933 (ac)DDDIAALVVDNGSGMCK ddPTM_HeLa_CUDC101_4h_R1 22 DDDIAALVVDNGSGMCK 17 0 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;C9JUM1;C9JZR7;C9JTX5 P60709 ACTB "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed" 0 0 ;;;;;;;;;;;;;;;;;;;;; ;;;;;;;;;;;;;;;;;;;;; 229.16 2.68E-217 4171148800 82421.2 77097.48 69096.01 69794.88 79211.93 75634.44 71595.19 71036.44 80736.58 66363.29 FALSE FALSE TRUE 72759.91188 79472.76198 72831.5493 72641.41689 73368.62374 74191.83907 74356.64046 79122.94119 77408.584 65968.5582 1.102948342 1.204706669 1.104034275 1.101152107 1.112175645 1.124654549 1.12715273 1.199403827 1.173416338 1 16.00949095 -8.657984673 0.625870691 0.997332222 1.136254544 0 0.064005312 0.360126915 0.275964156 0.024914547 0.009020594 2.20E-09 8.657984673 0.138922321 S(ph)NMSPHGLPAR ddPTM_HeLa_CUDC101_4h_R1 2 SNMSPHGLPAR 11 0 H0Y4T7;E7ESY4;Q13330-3;Q13330 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 S(0.688)NMS(0.312)PHGLPAR;S(0.703)NMS(0.297)PHGLPAR ; 101.38 0.012477 52400000 4799.2 3820.5 4718 3985.2 4886.8 4402.3 3593.5 3045.1 5923.8 5293.5 TRUE FALSE FALSE 4236.645051 3938.205077 4973.069351 4147.733682 4526.3105 4318.333462 3732.102499 3391.741875 5679.618457 5262.014027 0.805137544 0.748421623 0.945088578 0.788240712 0.860185943 0.820661716 0.70925362 0.644571044 1.07936209 1 12.36139938 -13.52287875 0.09399071 1.685340603 0.617296083 0.654731819 0.07485495 73.17540944 0.517955459 10.11613089 0.781515353 3.00E-14 13.52287875 -1.06804452 (ac)EEEIAALVIDNGSGMCK ddPTM_HeLa_CUDC101_4h_R1 9 EEEIAALVIDNGSGMCK 17 0 P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P63261 ACTG1 "Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;;;;;; ;;;;;;;; 262.54 6.50E-274 449352470 24962.67 21956.21 19455.417 21184.89 23699 23318.35 21517.79 20872.14 23076.92 18498.655 FALSE FALSE TRUE 22036.58366 22632.65481 20507.23569 22048.90138 21950.77199 22873.59132 22347.73837 23248.14005 22125.67959 18388.62418 1.198381317 1.230796529 1.115213161 1.199051173 1.193714754 1.243899005 1.21530236 1.264267507 1.203226483 1 14.16652592 -13.52287874 0.198370403 0.002699853 1.246284409 0 0.074468531 14.07348375 0.17015861 5.401149106 0.037622705 3.00E-14 13.52287874 1.243584555 S(ph)PGSPPGPELPIETALDDRER ddPTM_HeLa_CUDC101_4h_R1 1 SPGSPPGPELPIETALDDRER 21 1 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-5;Q8TEW0-9;Q8TEW0-8;Q5VWU8;Q8TEW0-10;B1AP52;F5GZI3 Q5VWV2;F5GZI3 PARD3 Partitioning defective 3 homolog 1 0 S(0.785)PGS(0.204)PPGPELPIET(0.011)ALDDRER 74.251 0.001948 2810000 2322.2 2185.5 2006.7 2124.2 2319 2029.2 1643.1 1707.5 2160.9 2595.8 TRUE FALSE FALSE 2049.995236 2252.832665 2115.188272 2210.834058 2147.93199 1990.496391 1706.474917 1901.874898 2071.826787 2580.360066 0.794460922 0.873069109 0.819726014 0.856792851 0.832415607 0.771402572 0.661332091 0.737057949 0.802921582 1 11.33335668 -13.52287875 0.106271421 1.690649638 0.646431704 0.245475275 0.073617166 43.98767259 0.345497958 6.727564643 0.381747092 3.00E-14 13.52287875 -1.044217934 (ac)GDREQLLQR ddPTM_HeLa_CUDC101_4h_R1 2 GDREQLLQR 9 1 Q04917;F8WEB6;A2IDB1 Q04917 YWHAH 14-3-3 protein eta 0 0 ; ; 63.306 9.36E-05 8403100 2270 1846.41 1987.57 1796.13 1998.32 1899.79 2075.98 1816.75 2089.26 2141.2 FALSE FALSE TRUE 2003.914041 1903.295704 2095.024046 1869.383945 1850.907915 1863.554671 2156.051244 2023.561476 2003.139818 2128.464047 0.941483622 0.894210878 0.98428914 0.878278375 0.869597923 0.875539652 1.012961082 0.950714427 0.941119875 1 11.05559701 -8.570134424 0.678145673 0.998611268 0.922874447 0.077721276 0.048734996 0.71267354 0.665066674 0.02674042 0.011208042 2.69E-09 8.570134424 -0.07573682 S(ph)PSVSS(ph)PEPAEK ddPTM_HeLa_CUDC101_4h_R1 1 SPSVSSPEPAEK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.994)PS(0.007)VS(0.229)S(0.77)PEPAEK 112.44 0.00095894 0 2658 2632.4 2067.7 2525.9 2923.5 2362.7 1687.6 1893.2 3290.3 2979.7 TRUE FALSE FALSE 2346.433269 2713.501124 2179.486116 2628.91712 2707.839229 2317.635434 1752.691297 2108.714235 3154.672441 2961.976612 0.792184942 0.916111597 0.735821514 0.887554989 0.914200071 0.782462436 0.591730296 0.711928051 1.065056499 1 11.53234453 -13.52287875 0.033340462 2.199428586 3.17E-13 0.585774843 0.087373721 602.2633388 1.609512429 84.40700214 32.99631865 3.00E-14 13.52287875 -2.199428586 (ac)GEMEQLR ddPTM_HeLa_CUDC101_4h_R1 1 GEMEQLR 7 0 F5GZN8;F5H8J8;F5H100;F5H0S8;E9PCP0;P16520-2;P16520 F5GZN8 GNB3 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 0 0 52.299 0.0021798 0 209.96 125.47 205.54 202.96 182.7 188.35 116.57 149.79 184.91 213.61 FALSE FALSE TRUE 185.3488071 129.335582 216.6521141 211.2375861 169.222585 184.7575376 121.0661439 166.8414881 177.2879315 212.3394382 0.872889222 0.609098258 1.020310292 0.994810893 0.796943735 0.870104673 0.57015383 0.7857301 0.834927007 1 7.73022854 -1 0.08733743 1.125476311 0.010664979 0.100133559 0.139035973 152.7738927 0.971063288 1.728383767 20.53280509 0.1 1 -1.114811332 (ac)GTRDDEYDYLFK ddPTM_HeLa_CUDC101_4h_R1 2 GTRDDEYDYLFK 12 1 B4DQU5;H3BMH2;H3BSC1;P62491-2;Q15907-2;P62491;Q15907 B4DQU5 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B 0 0 ; ; 98.249 0.0020251 26482000 3890.9 3022.2 2959.9 2775.5 3528.2 3114.3 2548.4 2676.72 3006 2952.8 FALSE FALSE TRUE 3434.8146 3115.3104 3119.921147 2888.696887 3267.931715 3054.899916 2646.692642 2981.426985 2882.091408 2935.236614 1.170200243 1.061348984 1.062919811 0.984144472 1.113345241 1.040767855 0.90169652 1.015736507 0.981894064 1 11.51926109 -4.939145238 6.627940707 1.073927562 0.959926661 0.217820599 0.062951262 0.193990804 16.39774703 0.010003189 0.030446986 1.15E-05 4.939145238 -0.114000901 S(ph)SFSMEEGDVL ddPTM_HeLa_CUDC101_4h_R1 1 SSFSMEEGDVL 11 0 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 S(0.493)S(0.493)FS(0.013)MEEGDVL 155.11 0.00024833 976530 444.52 425.86 364.81 403.56 400.8 360.42 409.73 240.64 476.29 596.19 TRUE FALSE FALSE 392.4140394 438.9802418 384.5327321 420.0189211 371.2337825 353.545589 425.5334234 268.0334849 456.6571246 592.6438354 0.662141435 0.740715107 0.648842879 0.708720645 0.626402842 0.596556596 0.718025563 0.452267397 0.770542267 1 9.21102153 -13.52287875 0.183595429 2.569571868 0.565427743 0.44121949 0.099730937 15.30776853 0.177666634 8.558965065 0.081466491 3.00E-14 13.52287875 -2.004144125 S(ph)SLETLEDIEENAPLR ddPTM_HeLa_CUDC101_4h_R1 2 SSLETLEDIEENAPLR 16 0 Q8TDN4;Q8TDN4-2;V9GYB4 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 S(0.982)S(0.018)LETLEDIEENAPLR;S(0.981)S(0.019)LETLEDIEENAPLR ; 154.47 0.00011568 6395200 2693.2 2505.4 2681.3 2452.6 2502.1 2534.9 2305.3 1876.53 2977.8 3315.6 TRUE FALSE FALSE 2377.507179 2582.588404 2826.259188 2552.627629 2317.525068 2486.551006 2394.216193 2090.14659 2855.053824 3295.878664 0.721357617 0.783581153 0.857513118 0.774490778 0.703158491 0.75444252 0.726427286 0.634169763 0.866249676 1 11.68644742 -13.52287875 0.230028197 2.458405177 0.708942782 0.53382952 0.066889521 16.78766052 0.216260317 11.03824245 0.040505805 3.00E-14 13.52287875 -1.749462395 SATT(ph)TPSGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SATTTPSGSPR 11 0 Q2M2I8-2;Q2M2I8;A0A096LP60;A0A096LNZ0;A0A096LP25 Q2M2I8-2;A0A096LNZ0 AAK1 AP2-associated protein kinase 1 2 0 S(0.011)AT(0.051)T(0.564)T(0.372)PS(0.003)GS(0.999)PR 113.52 0.02209 45628000 7457.9 7022.2 6898.5 7359.9 8231.8 7013.7 6797.9 3775.8 8430.2 8558.5 TRUE FALSE FALSE 6583.696267 7238.545659 7271.453777 7660.068534 7624.556514 6879.925358 7060.09728 4205.62181 8082.703588 8507.593661 0.773861156 0.850833496 0.854701584 0.900380159 0.896206003 0.808680531 0.829858308 0.494337409 0.95005755 1 13.05453541 -13.52287875 0.028932084 2.132364572 3.95E-19 0.427446665 0.098548572 1096.813008 2.549558564 140.6708614 62.19256916 3.00E-14 13.52287875 -2.132364572 (ac)MDDREDLVYQAK ddPTM_HeLa_CUDC101_4h_R1 1 MDDREDLVYQAK 12 1 P62258;B4DJF2;I3L3T1;I3L0W5 P62258 YWHAE 14-3-3 protein epsilon 0 0 70.399 0.017982 110830000 3185.4 3231 3801.7 3466.2 4561.4 4249.7 3952.2 4178.3 4564 4267.5 FALSE FALSE TRUE 2812.012241 3330.54328 4007.231402 3607.566618 4224.91461 4168.644053 4104.637678 4653.940783 4375.869988 4242.11672 0.662879507 0.785113541 0.944630161 0.850416633 0.995944923 0.982680187 0.967591877 1.097079852 1.031529842 1 12.0505686 -5.745686116 1.232938795 0.836560546 1.023805686 0.211377163 0.108951917 0.498000494 1.495236851 0.021614721 0.059739423 1.80E-06 5.745686116 0.18724514 SATTT(ph)PSGSPR ddPTM_HeLa_CUDC101_4h_R1 1 SATTTPSGSPR 11 0 Q2M2I8-2;Q2M2I8;A0A096LP60;A0A096LNZ0;A0A096LP25 Q2M2I8-2;A0A096LNZ0 AAK1 AP2-associated protein kinase 1 1 0 SAT(0.11)T(0.11)T(0.374)PS(0.374)GS(0.032)PR 114.71 0.027221 5256600 2953.5 2476.6 2742.7 2995.7 3094.2 3035.5 2416.1 1419 3458 3691 TRUE FALSE FALSE 2607.295207 2552.901111 2890.978658 3117.877595 2865.947031 2977.602895 2509.289786 1580.533224 3315.459776 3669.045768 0.710619429 0.695794294 0.787937475 0.849778878 0.781115094 0.811546948 0.683908009 0.430775009 0.903629986 1 11.84118919 -13.52287875 0.198667824 2.294006325 0.670686713 0.433016986 0.109275802 33.626506 0.406870952 16.87914721 0.116848476 3.00E-14 13.52287875 -1.623319613 SFEVEEVET(ph)PNS(ph)TPPRR ddPTM_HeLa_CUDC101_4h_R1 1 SFEVEEVETPNSTPPRR 17 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 2 0 SFEVEEVET(0.994)PNS(0.582)T(0.424)PPRR 76.061 0.019786 10280000 2530.1 2787.3 2471.7 2434.4 2253.2 2354.2 2047.8 1359.3 3138.8 3529.9 TRUE FALSE FALSE 2233.525513 2873.173409 2605.327578 2533.685354 2086.985925 2309.297557 2126.784332 1514.037218 3009.417335 3508.903998 0.636530813 0.818823602 0.742490413 0.722073148 0.594768602 0.658125032 0.606110721 0.431484366 0.857651659 1 11.77680476 -13.52287875 0.14309816 2.251897932 0.509979687 0.662482234 0.087833793 28.51462435 0.282117335 10.15572776 0.238243344 3.00E-14 13.52287875 -1.741918245 (ac)MDGFAGSLDDSISAASTSDVQDR ddPTM_HeLa_CUDC101_4h_R1 1 MDGFAGSLDDSISAASTSDVQDR 23 0 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 0 0 109.1 4.05E-13 1868800 0 0 0 59.449 0 0 171.32 0 120.54 0 FALSE FALSE TRUE 0 0 0 61.87358718 0 0 177.9278698 0 115.5712902 0 0 (ac)MDIAIHHPWIR ddPTM_HeLa_CUDC101_4h_R1 1 MDIAIHHPWIR 11 0 E9PJL7;P02511;E9PS12;E9PRA8 E9PJL7 CRYAB Alpha-crystallin B chain 0 0 68.657 0.0024146 0 725.06 554.69 510.83 511.34 654.41 499.56 607.09 398.24 565.31 567.33 FALSE FALSE TRUE 640.0695659 571.7793414 538.447015 532.1946554 606.1354781 490.0317253 630.5056647 443.5740319 542.0076825 563.9554959 1.134964675 1.013873161 0.954768628 0.943682009 1.074793104 0.868919141 1.118006065 0.786540844 0.961082366 1 9.139437508 -6.994071907 5.853017287 1.064344872 0.966746701 0.07839443 0.098535331 0.196768057 25.2517817 0.014860194 0.019152962 1.01E-07 6.994071907 -0.097598171 SGLEPASS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 SGLEPASSPSK 11 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;Q9Y618-2 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 SGLEPAS(0.027)S(0.96)PS(0.013)K 115.33 0.0054633 74389000 6122.4 5097.7 5342.7 5256.2 5072.2 4903.3 4394.8 4229.9 5403.4 7193.3 TRUE FALSE FALSE 5404.741553 5254.754095 5631.542523 5470.570555 4698.033911 4809.777722 4564.308908 4711.414718 5180.669565 7150.513932 0.75585358 0.734877821 0.787571715 0.765059772 0.657020454 0.672647836 0.638319001 0.658891761 0.724517093 1 12.80383122 -13.52287875 0.129385641 2.061415911 0.566278963 0.142704541 0.092286565 14.04458393 0.129023515 3.815436788 0.123463631 3.00E-14 13.52287875 -1.495136948 EENTSNESTDVTKGDSK(ac)NAK ddPTM_HeLa_CUDC101_4h_R1 2 EENTSNESTDVTKGDSKNAK 20 2 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 1 ; EENTSNESTDVTKGDSK(1)NAK;EENTSNESTDVTK(0.004)GDSK(0.996)NAK 204.78 1.88E-19 14654600 3693.05 2423 2240 2015.68 2545.71 2223.54 2014.86 1456.94 6773.3 5000.42 FALSE TRUE FALSE 3260.156277 2497.649758 2361.101176 2097.888143 2357.918045 2181.129679 2092.573825 1622.79216 6494.101707 4970.677279 0.655877679 0.502476749 0.475005928 0.422052776 0.474365547 0.438799294 0.420983642 0.326473048 1.306482264 1 12.27922672 -8.183065486 0.380259662 1.064156687 0.368669823 0.865790883 0.107908648 0.148809018 0.051595298 0.042565356 0.020348651 6.56E-09 8.183065486 -0.695486864 SGLEPASS(ph)PSKGSEPR ddPTM_HeLa_CUDC101_4h_R1 1 SGLEPASSPSKGSEPR 16 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;Q9Y618-2 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 SGLEPAS(0.019)S(0.979)PS(0.001)KGSEPR 185.33 3.14E-17 0 2760.6 2808.4 2929.5 2484.8 2354.6 2545.2 2160.4 2014.9 2799 3292.1 TRUE FALSE FALSE 2437.006653 2894.923475 3087.877631 2586.140884 2180.905849 2496.654551 2243.727352 2244.268071 2683.624035 3272.518443 0.74468844 0.884616397 0.943578374 0.79026014 0.666430423 0.762915349 0.685627107 0.685792337 0.82004856 1 11.67618561 -13.52287875 0.125865251 1.779288265 0.646103186 0.337680105 0.087895858 48.74840254 0.438493104 9.72649643 0.342302017 3.00E-14 13.52287875 -1.133185079 SGYSS(ph)PGSPGTPGSR ddPTM_HeLa_CUDC101_4h_R1 1 SGYSSPGSPGTPGSR 15 0 I3L170;A0A0G2JQJ7;A0A0G2JPD5;A0A0G2JS76;A0A0G2JMX7;P10636-3;P10636-2;P10636-4;P10636-6;P10636-5;P10636-7;P10636-8;P10636;P10636-9 I3L170 MAPT Microtubule-associated protein;Microtubule-associated protein tau 1 0 SGYS(0.132)S(0.801)PGS(0.057)PGT(0.011)PGSR 98.592 0.0064522 9452700 2156.9 2099.6 1854.8 2013.2 2395.3 1960.6 1783.5 1514.7 2014.9 2379.7 TRUE FALSE FALSE 1904.071452 2164.286187 1955.076098 2095.306998 2218.603491 1923.204822 1852.290192 1687.127325 1931.844969 2365.545439 0.80491857 0.914920573 0.826480044 0.885760621 0.937882424 0.813006924 0.783028794 0.713208589 0.816659421 1 11.20795716 -13.52287875 0.23841614 1.975344148 0.812837455 0 0.083309335 30.2163136 0.393934958 13.85484451 0.043160298 3.00E-14 13.52287875 -1.162506693 (ac)MDLRWARDLHLR ddPTM_HeLa_CUDC101_4h_R1 2 MDLRWARDLHLR 12 2 Q08462-2 Q08462-2 0 0 ; ; 57.836 0.036583 4477200 3400.7 1598.18 7199.8 6806.6 1466.73 1286.57 2297.5 1069.09 4425.4 7407.6 FALSE FALSE TRUE 3002.075101 1647.418031 7589.042966 7084.202569 1358.53225 1262.030821 2386.115345 1190.790884 4242.983139 7363.539266 0.407694587 0.223726386 1.030624363 0.962064887 0.184494467 0.171389162 0.324044628 0.161714475 0.576215185 1 12.84618365 -13.52287875 0.109335896 2.829653667 0.06113799 0.205589137 0.307267862 92.39029369 0.742901016 38.59819274 2.030134789 3.00E-14 13.52287875 -2.768515678 SIQADGLVWGSS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 SIQADGLVWGSSK 13 0 P24534 P24534 EEF1B2 Elongation factor 1-beta 1 0 SIQADGLVWGS(0.197)S(0.803)K 125.73 0.0016124 19204000 2225.7 2282.4 2211.8 1965.7 2325.3 1918.8 1804.4 1678.5 2116.1 2495.8 TRUE FALSE FALSE 1964.80682 2352.718039 2331.376598 2045.869742 2153.767252 1882.202087 1873.996312 1869.573655 2028.873462 2480.954871 0.791955889 0.948311502 0.939709394 0.824629971 0.868120286 0.758660349 0.755352842 0.753570199 0.81777927 1 11.27667978 -13.52287875 0.126713997 1.560206704 0.737902724 0.150932993 0.078196322 56.26282589 0.508706873 8.208454848 0.283075416 3.00E-14 13.52287875 -0.82230398 SNPSAVAGNET(ph)PGASTK ddPTM_HeLa_CUDC101_4h_R1 1 SNPSAVAGNETPGASTK 17 0 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;A0A3B3ISZ5;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 SNPSAVAGNET(0.951)PGAS(0.044)T(0.005)K 218.14 9.43E-25 16370000 4626.4 4147.9 4529.6 4222.4 4357.4 4334.2 3600.8 2847.5 4740 5571.5 TRUE FALSE FALSE 4084.100405 4275.691883 4774.483877 4394.607723 4035.963283 4251.532356 3739.684062 3171.64789 4544.615194 5538.36047 0.737420474 0.772014011 0.86207532 0.793485319 0.728728891 0.767651795 0.675233055 0.572669097 0.820570495 1 12.43524324 -13.52287875 0.143641211 1.938962903 0.636265988 0.440843357 0.080221322 29.42507645 0.291910552 7.873082283 0.182388703 3.00E-14 13.52287875 -1.302696915 SNVSSPATPTAS(ph)SSSSTTPTRK ddPTM_HeLa_CUDC101_4h_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVSSPATPTAS(0.315)S(0.199)S(0.134)S(0.021)S(0.053)T(0.134)T(0.134)PT(0.01)RK 85.407 0.00037599 45943000 3339.9 3268.8 2732.7 3179.4 3320 3192.8 2344.5 2801.3 3768.5 3484 TRUE FALSE FALSE 2948.401985 3369.507854 2880.438028 3309.069675 3075.090214 3131.90266 2434.92815 3120.188669 3613.160835 3463.277013 0.851332993 0.97292473 0.831708817 0.955473577 0.887913442 0.904317687 0.703070572 0.900935344 1.043278034 1 11.75792207 -13.52287875 0.198653066 1.594744945 0.844931254 0.409561295 0.070694166 44.79874671 0.542031971 10.3858373 0.071919684 3.00E-14 13.52287875 -0.749813691 SPMFPALGEAS(ph)SDDDLFQSAKPKPAK ddPTM_HeLa_CUDC101_4h_R1 1 SPMFPALGEASSDDDLFQSAKPKPAK 26 2 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0 Q641Q2;A0A0A0MR88 FAM21A;FAM21C;FAM21D WASH complex subunit FAM21A;WASH complex subunit FAM21C;Putative WASH complex subunit FAM21 1 0 SPMFPALGEAS(0.5)S(0.5)DDDLFQSAKPKPAK 91.583 4.04E-06 35898000 1584.4 1482.5 1495.8 1487.2 1524 1424.2 1278.4 1206.9 1674.7 1994.9 TRUE FALSE FALSE 1398.679034 1528.174068 1576.667473 1547.854444 1411.577556 1397.035758 1327.708316 1344.288618 1605.668157 1983.034246 0.705322682 0.770624144 0.795078288 0.780548519 0.71182712 0.704494015 0.66953373 0.677894807 0.809702687 1 10.95349388 -13.52287875 0.233889095 2.611527211 0.689527195 0.383815614 0.072409294 12.20216603 0.158094281 9.014191874 0.030667039 3.00E-14 13.52287875 -1.922000015 (ac)MDSEGGSLLLDEDSEVFK ddPTM_HeLa_CUDC101_4h_R1 1 MDSEGGSLLLDEDSEVFK 18 0 E5RGS7;B3KPU0;A0A087WUQ1;H7C1D1 E5RGS7 PDLIM2 0 0 140.91 4.15E-33 3900100 2402.2 2052.1 1631.8 1811.1 2056.1 1700.1 1900.9 1947.3 2277.3 1995.9 FALSE FALSE TRUE 2120.617757 2115.322769 1720.020044 1884.964486 1904.425599 1667.673425 1974.21835 2168.972761 2183.42873 1984.028298 1.068844512 1.066175705 0.866933221 0.950069355 0.959878244 0.840549213 0.99505554 1.093216646 1.100502817 1 10.95421689 -6.784648742 24.98828385 1.035943212 0.948302648 0.344963767 0.070007988 231.3298539 249059.7324 0.011171138 0.014686784 1.64E-07 6.784648742 -0.087640564 SPS(ph)FASEWDEIEK ddPTM_HeLa_CUDC101_4h_R1 1 SPSFASEWDEIEK 13 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.01)PS(0.97)FAS(0.021)EWDEIEK 158.31 7.38E-05 132620000 2950.3 2505.7 2491 2135.7 3018.8 2568.4 2687.3 2418.2 2699.8 2326.7 TRUE FALSE FALSE 2604.470306 2582.897647 2625.670995 2222.803077 2796.109138 2519.412049 2790.950061 2693.478113 2588.513101 2312.860685 1.126081793 1.11675453 1.135248228 0.961062243 1.208939715 1.08930558 1.206709111 1.164565653 1.119182456 1 11.17546265 -13.52287875 0.149861951 0.530481601 1.172702621 0.062243421 0.073608426 52.88526275 0.54043706 7.342156157 0.147426291 3.00E-14 13.52287875 0.64222102 SPSDSSTAS(ph)TPVAEQIER ddPTM_HeLa_CUDC101_4h_R1 1 SPSDSSTASTPVAEQIER 18 0 Q16643-3;Q16643;Q16643-2;D6R9Q9 Q16643-3 DBN1 Drebrin 1 0 SPSDSST(0.001)AS(0.923)T(0.076)PVAEQIER 175.8 1.43E-07 41438000 2393.8 1970.5 1950.9 2593.2 2382.6 2036.2 1854 1540.5 2430.5 2686.7 TRUE FALSE FALSE 2113.202393 2031.208769 2056.371555 2698.961905 2206.840345 1997.362878 1925.509401 1715.864293 2330.313761 2670.719389 0.791248381 0.760547431 0.769969157 1.010574872 0.826309328 0.747874481 0.720970316 0.642472699 0.872541597 1 11.38301269 -13.52287875 0.143384565 1.771437299 0.70172748 0.313670396 0.092467036 48.74858877 0.482994516 10.68765074 0.249065439 3.00E-14 13.52287875 -1.069709818 SS(ph)PLPAK ddPTM_HeLa_CUDC101_4h_R1 1 SSPLPAK 7 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 S(0.033)S(0.967)PLPAK 118.74 0.012077 145300000 17654 9858 14635 17651 10453 12846 14463 8601.7 16772 19269 TRUE FALSE FALSE 15584.62488 10161.7133 15426.21237 18370.88407 9681.903015 12600.98395 15020.84275 9580.882759 16080.65106 19154.38713 0.813632134 0.530516232 0.805361835 0.959095373 0.505466604 0.657864116 0.784198557 0.500192603 0.839528352 1 14.22538725 -13.52287875 0.084902674 2.114577879 0.391033343 0.274985961 0.147553368 104.143289 0.674358584 21.11291609 2.0587901 3.00E-14 13.52287875 -1.723544536 SSSSPLVVVSVKS(ph)PNQSLR ddPTM_HeLa_CUDC101_4h_R1 1 SSSSPLVVVSVKSPNQSLR 19 1 Q96B01-3;Q96B01-2;Q96B01 Q96B01-3 RAD51AP1 RAD51-associated protein 1 1 0 SSSSPLVVVS(0.1)VKS(0.777)PNQS(0.123)LR 67.552 0.0093862 20103000 512.95 429.41 672.9 506.26 642.58 409.68 391.24 298.1 529.96 777.57 TRUE FALSE FALSE 452.8227786 442.6396131 709.2790094 526.907471 595.1781536 401.8660366 406.3302579 332.034499 508.1148245 772.9449791 0.585840895 0.572666393 0.917631951 0.681688199 0.77001361 0.51991545 0.52569105 0.429570678 0.657375154 1 9.594221911 -13.52287875 0.213348217 2.910077195 0.561643476 0.073017623 0.166226314 29.33651368 0.366894778 23.4115677 0.119866576 3.00E-14 13.52287875 -2.348433719 SSSVSPSSWKS(ph)PPAS(ph)PESWK ddPTM_HeLa_CUDC101_4h_R1 1 SSSVSPSSWKSPPASPESWK 20 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 SSSVSPSS(0.002)WKS(0.998)PPAS(0.972)PES(0.028)WK 124.21 2.45E-05 35439000 4232.7 4155.3 3804.4 3756.5 4753.2 3793 3310.6 3188 4437.8 4751.7 TRUE FALSE FALSE 3736.549322 4283.319868 4010.077372 3909.706307 4402.565906 3720.654845 3438.290951 3550.909034 4254.872006 4723.436677 0.791065823 0.906822757 0.848974517 0.827724933 0.932068366 0.787700799 0.727921466 0.751763869 0.900800052 1 12.2056212 -13.52287875 0.224427051 1.977931015 0.79191623 0.375306218 0.064881404 27.46153813 0.350575073 11.84245559 0.048545587 3.00E-14 13.52287875 -1.186014784 STDS(ph)PVPGSEDDLVAGATLHSPEWSEER ddPTM_HeLa_CUDC101_4h_R1 1 STDSPVPGSEDDLVAGATLHSPEWSEER 28 0 Q9H694;Q9H694-2 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 S(0.208)T(0.208)DS(0.573)PVPGS(0.01)EDDLVAGATLHSPEWSEER 138.72 2.94E-16 8271500 3889.7 3807.2 3181.8 3542.8 4229.2 3615.6 3167.5 2443.6 4192.3 4199.7 TRUE FALSE FALSE 3433.755262 3924.495319 3353.817732 3687.290697 3917.220342 3546.638454 3289.671536 2721.769547 4019.49162 4174.719998 0.822511513 0.940061925 0.803363515 0.883242636 0.938319299 0.849551217 0.787998126 0.651964574 0.962817056 1 12.02746372 -13.52287875 0.025073005 2.127689386 5.88E-18 0.525855908 0.067565929 1171.494288 2.364142821 142.4421532 70.16621789 3.00E-14 13.52287875 -2.127689386 (ac)MEDMNEYSNIEEFAEGSK ddPTM_HeLa_CUDC101_4h_R1 8 MEDMNEYSNIEEFAEGSK 18 0 O14979-3;O14979-2;A0A087WU03 O14979-3 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like 0 0 ;;;;;;; ;;;;;;; 206.69 4.61E-144 102100400 33268.2 27902 25505 26146.8 32081.8 27759.1 27323.4 28046.1 30674.7 29531.1 FALSE FALSE TRUE 29368.55203 28761.62755 26883.87745 27213.17952 29715.18953 27229.64142 28377.27269 31238.75466 29410.27588 29355.4477 1.000446402 0.979771381 0.915805397 0.927023147 1.012254687 0.927583926 0.966678246 1.06415528 1.001867734 1 14.84134064 -7.112913992 4.638351289 1.000095921 0.965709216 0.099740017 0.041650122 0.354686794 12.15893018 0.006750176 0.008342044 7.71E-08 7.112913992 -0.034386705 STPESGDS(ph)DKESVGSSSTSNEGGR ddPTM_HeLa_CUDC101_4h_R1 2 STPESGDSDKESVGSSSTSNEGGR 24 1 Q6GQQ9-2;Q6GQQ9 Q6GQQ9-2 OTUD7B OTU domain-containing protein 7B 1 0 S(0.012)T(0.012)PES(0.291)GDS(0.486)DKES(0.094)VGS(0.015)S(0.015)S(0.05)T(0.023)S(0.002)NEGGR;S(0.081)T(0.081)PES(0.213)GDS(0.566)DKES(0.025)VGS(0.004)S(0.015)S(0.015)T(0.001)SNEGGR ; 80.41 6.52E-05 94878000 5007.9 4195.5 4757.1 4746.8 4625.1 4086.6 3788 2836.1 5477.8 5789.1 TRUE FALSE FALSE 4420.881553 4324.758382 5014.283215 4940.395021 4283.915587 4008.654914 3934.104429 3158.95016 5252.002765 5754.666176 0.768225544 0.751522026 0.871342153 0.858502452 0.744424691 0.696592086 0.683637297 0.548937169 0.912651161 1 12.49051653 -13.52287875 0.041509702 2.276918347 2.36E-17 0.715324354 0.065828456 250.6337862 0.829614586 40.38509623 12.58597366 3.00E-14 13.52287875 -2.276918347 LFDDS(ph)DER ddPTM_HeLa_CUDC101_4h_R1 1 LFDDSDER 8 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 LFDDS(1)DER 97.813 0.020845 7089700 3385.5 2503.1 2095.7 2490.7 2035.8 2159.5 2088.9 1238.4 3598.8 4175.7 TRUE FALSE FALSE 2988.656822 2580.217544 2208.999881 2592.281512 1885.62309 2118.311135 2169.469573 1379.37445 3450.455941 4150.862751 0.720008587 0.62160994 0.532178492 0.624516316 0.45427257 0.510330325 0.522655097 0.332310301 0.831262354 1 12.01919551 -8.076306579 0.205122486 1.2167917 0.303800218 0.832558928 0.07525695 0.58662363 0.082129281 0.197030906 0.115412071 8.39E-09 8.076306579 -0.912991482 STSAPQMS(ph)PGSSDNQSSS(ph)PQPAQQK ddPTM_HeLa_CUDC101_4h_R1 3 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 S(0.001)T(0.002)S(0.003)APQMS(0.443)PGS(0.356)S(0.171)DNQS(0.141)S(0.233)S(0.65)PQPAQQK;STSAPQMS(0.889)PGS(0.103)S(0.007)DNQSS(0.441)S(0.559)PQPAQQK;STSAPQMS(0.928)PGS(0.025)S(0.047)DNQSS(0.296)S(0.704)PQPAQQK ;; 175.02 2.36E-13 74049900 21052 19301.7 18281.4 17445.7 21527.7 19305.9 16524.2 16135.4 21542.5 21071.7 TRUE FALSE FALSE 18584.31647 19896.3625 19269.74778 18157.21105 19939.64446 18937.67212 17161.54393 17972.18871 20654.50903 20946.36459 0.887233505 0.94987187 0.919956668 0.866843073 0.951938193 0.90410305 0.819308948 0.858009925 0.986066529 1 14.35441225 -13.52287875 0.147891238 1.387102739 0.853152706 0.595614308 0.035113418 39.10914282 0.396014944 4.442302495 0.093315357 3.00E-14 13.52287875 -0.533950034 (ac)MEEEEEAIGLLDK ddPTM_HeLa_CUDC101_4h_R1 2 MEEEEEAIGLLDK 13 0 Q12979-2 Q12979-2 0 0 ; ; 91.936 0.00030806 6879800 5236.2 4362.4 3798.8 4038.9 4548.4 4776 4147.6 3858.8 4885.6 4963.4 FALSE FALSE TRUE 4622.420574 4496.800373 4004.174619 4203.6238 4212.873594 4684.905757 4307.574321 4298.070194 4684.2135 4933.877476 0.936873807 0.911413061 0.811567502 0.851991931 0.853866683 0.949538326 0.873060659 0.871134359 0.949398019 1 12.26850617 -7.666314429 1.023090921 0.983953883 0.87197742 0.550376573 0.036842259 0.217827296 0.473877878 0.009230691 0.008900618 2.16E-08 7.666314429 -0.111976462 SVS(ph)KESVAS(ph)MGADSGDDFASDGSSSR ddPTM_HeLa_CUDC101_4h_R1 1 SVSKESVASMGADSGDDFASDGSSSR 26 1 Q92805;Q5T165 Q92805 GOLGA1 Golgin subfamily A member 1 2 0 S(0.044)VS(0.607)KES(0.36)VAS(0.979)MGADS(0.009)GDDFASDGSSSR 72.949 0.00032474 12374000 2610.1 3060.8 2336.9 2358.9 2839.7 2153.1 1964.3 1930.1 3407.1 3473.7 TRUE FALSE FALSE 2304.148035 3155.09962 2463.239883 2455.106138 2630.220988 2112.033205 2040.063709 2149.814782 3266.657896 3453.038278 0.667281347 0.913716955 0.713354352 0.710998819 0.761712086 0.611644886 0.590802518 0.622586432 0.946024235 1 11.75365061 -13.52287875 0.174570803 2.260364787 0.611044642 0.695664657 0.077655123 25.24310524 0.284581196 10.88716167 0.12594254 3.00E-14 13.52287875 -1.649320146 SVS(ph)KESVASMGADS(ph)GDDFASDGSSSR ddPTM_HeLa_CUDC101_4h_R1 1 SVSKESVASMGADSGDDFASDGSSSR 26 1 Q92805;Q5T165 Q92805 GOLGA1 Golgin subfamily A member 1 2 0 S(0.063)VS(0.587)KES(0.35)VAS(0.194)MGADS(0.79)GDDFAS(0.006)DGS(0.006)S(0.002)SR 64.058 0.0028225 16311000 2065.5 2253.1 1943.8 1980 2147.3 1678.1 1619.9 1732.4 2364.6 2444.9 TRUE FALSE FALSE 1823.385221 2322.51534 2048.887708 2060.752958 1988.897957 1646.093038 1682.380086 1929.609413 2267.130187 2430.357626 0.750253873 0.955626989 0.843039595 0.847921695 0.818356087 0.677304863 0.692235607 0.7939611 0.932838099 1 11.24695291 -13.52287875 0.204954663 2.00180055 0.749555178 0.481441186 0.074078449 31.83736434 0.391049606 12.84504953 0.078067512 3.00E-14 13.52287875 -1.252245373 VVTVVTTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VVTVVTTKK 9 1 A0A0C4DG89;Q7L014;D6RJA6 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 1 ; VVTVVTTK(1)K;VVTVVTTK(1)K 211.45 3.95E-12 31264000 11120.2 10565.1 9306.6 11233.5 12257.4 11132.4 12460.9 14186.5 6547.1 4987.5 FALSE TRUE FALSE 9816.707013 10890.59821 9809.742947 11691.65069 11353.19602 10920.06802 12941.52109 15801.43382 6277.225767 4957.834128 1.98003942 2.196644326 1.978634761 2.358217396 2.289950758 2.202588416 2.61031748 3.187164679 1.266122586 1 12.27549429 -7.930028481 0.138381885 5.11E-18 3.543276208 0.875689939 0.208555943 1.612172447 0.153274274 2.093494891 1.519786258 1.17E-08 7.930028481 3.543276208 (ac)MEGLDDGPDFLSEEDR ddPTM_HeLa_CUDC101_4h_R1 2 MEGLDDGPDFLSEEDR 16 0 G3V5X9;Q9UNH7;G3V2U1;H0YJF8;G3V4Z5 G3V5X9 SNX6 "Sorting nexin-6;Sorting nexin-6, N-terminally processed" 0 0 ; ; 231.83 1.74E-69 26076000 270.04 240.12 0 303.82 443.56 257.76 153.41 213.78 376.12 368.39 FALSE FALSE TRUE 238.3863206 247.5178126 0 316.2110928 410.8394625 252.8436575 159.3270751 238.1158511 360.6161744 366.1987999 0.650975155 0.675911042 0 0.86349571 1.12190281 0.690454632 0.435083553 0.650236569 0.984755205 1 8.516483253 -8.95893149 0.837791084 0.99428559 0.637035528 0.212877977 0.272157611 0.802519446 1.055136993 0.169345822 0.056898913 1.10E-09 8.95893149 -0.357250062 (ac)MEGPLSVFGDR ddPTM_HeLa_CUDC101_4h_R1 1 MEGPLSVFGDR 11 0 P17987;E7ERF2;F5GZ03;F5GYL4;F5GZI8 P17987 TCP1 T-complex protein 1 subunit alpha 0 0 101.46 0.016374 941030 606.84 604.54 580.13 543.43 559.96 515.65 540.71 508.02 622.75 623.63 FALSE FALSE TRUE 535.7071351 623.1651608 611.4935826 565.5934243 518.6528664 505.8148354 561.5653658 565.8509433 597.0799814 619.920621 0.864154405 1.005233799 0.986406262 0.912364269 0.836643997 0.815934844 0.905866569 0.912779676 0.963155541 1 9.275939684 -5.975062554 6.770773759 0.944230464 0.867392331 0.452630803 0.047455704 0.186827697 31.16141538 0.009204255 0.016594173 1.06E-06 5.975062554 -0.076838133 SVS(ph)SSSYR ddPTM_HeLa_CUDC101_4h_R1 1 SVSSSSYR 8 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 S(0.001)VS(0.448)S(0.448)S(0.101)S(0.003)YR 97.565 0.021072 23696000 1632.5 978.83 1705.8 1598 1596.7 1299.3 1191.4 907.11 1706.1 1964.3 TRUE FALSE FALSE 1441.140825 1008.986592 1798.020708 1663.173347 1478.914622 1274.518017 1237.352697 1010.371736 1635.773836 1952.616256 0.738056349 0.516735733 0.920826456 0.851766619 0.757401572 0.652723244 0.633689642 0.517445111 0.837734414 1 10.93119273 -13.52287875 0.121406012 2.022423713 0.543053497 0.340800583 0.126009979 57.82003541 0.505714226 14.46258343 0.566545536 3.00E-14 13.52287875 -1.479370217 SVTS(ph)SPVEK ddPTM_HeLa_CUDC101_4h_R1 2 SVTSSPVEK 9 0 G8JLP4;Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;F8VVB8 G8JLP4 KIAA0430 Meiosis arrest female protein 1 1 0 S(0.002)VT(0.134)S(0.777)S(0.088)PVEK;S(0.002)VT(0.132)S(0.781)S(0.086)PVEK ; 101.3 0.016528 39674000 9974.7 8601.6 8672.1 9273.5 8496.7 8044.4 7748.7 6826.1 10217.4 12409.3 TRUE FALSE FALSE 8805.480787 8866.605101 9140.939958 9651.713413 7869.915369 7890.966473 8047.569955 7603.155632 9796.234447 12335.48893 0.713833139 0.718788299 0.741027778 0.782434605 0.637989739 0.639696287 0.652391648 0.616364351 0.794150479 1 13.59052728 -13.52287875 0.167218297 2.289112762 0.598654779 0.500040798 0.076098477 12.38841141 0.136047383 5.185445573 0.070490729 3.00E-14 13.52287875 -1.690457983 SWEEPNWMGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SWEEPNWMGSPR 12 0 B0QY95;Q9NQG6;Q9NQG6-2 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 0 SWEEPNWMGS(1)PR 106.58 0.0066131 5262600 1224.7 892.06 837.52 1192.3 1048.5 1221.7 994.45 754.97 1246 1127.5 TRUE FALSE FALSE 1081.142523 919.5433112 882.7988646 1240.927148 971.1542439 1198.398108 1032.80627 840.9127331 1194.639353 1120.79358 0.964622337 0.820439488 0.787655176 1.107186167 0.86648805 1.069240697 0.921495526 0.750283324 1.065887041 1 10.13030488 -13.52287875 0.013693059 2.098867339 1.04E-12 0.145962274 0.11079397 10242.90103 11.33178253 1053.117001 714.7516404 3.00E-14 13.52287875 -2.098867339 T(ph)VSDNS(ph)LSNSR ddPTM_HeLa_CUDC101_4h_R1 1 TVSDNSLSNSR 11 0 H0Y7W6;B7ZL14;Q96RU3-4;Q96RU3-3;Q96RU3-5;Q96RU3-2;Q96RU3 H0Y7W6;Q96RU3-5 FNBP1 Formin-binding protein 1 2 0 T(0.782)VS(0.21)DNS(0.582)LS(0.424)NSR 106.76 0.029266 46475000 6886.5 4933.8 4987.8 5332.9 6009.9 6522.9 6709 5027.2 4726 4831.4 TRUE FALSE FALSE 6079.274909 5085.80453 5257.455555 5550.398713 5566.56165 6398.48655 6967.768377 5599.476127 4531.19228 4802.662618 1.265813444 1.058955195 1.094696 1.155691989 1.159057401 1.332279 1.450813628 1.165910782 0.943475035 1 12.22961875 -13.52287875 0.116969489 0.30913346 1.348875005 0.467523906 0.106344995 81.82567771 0.694903979 13.80540458 0.602188499 3.00E-14 13.52287875 1.039741544 TDEERPPVEHS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 1 TDEERPPVEHSPEK 14 1 Q15170-2 Q15170-2 1 0 TDEERPPVEHS(1)PEK 83.404 0.012178 71414000 2497.6 2375.3 2208 2625.6 2229.8 2243.1 1985.3 1864.4 2684.8 2737.6 TRUE FALSE FALSE 2204.835114 2448.480178 2327.371159 2732.683317 2065.312096 2200.316605 2061.873686 2076.63576 2574.131408 2721.316633 0.810208958 0.89974101 0.855237178 1.004176906 0.758938549 0.808548545 0.757675039 0.763099646 0.945913965 1 11.41008911 -13.52287875 0.151420824 1.615566523 0.768263789 0.452721873 0.068031381 45.67030834 0.470029499 8.471355099 0.164156473 3.00E-14 13.52287875 -0.847302734 TGSESSQTGTSTTS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 T(0.009)GS(0.001)ES(0.005)S(0.004)QT(0.004)GT(0.001)S(0.002)T(0.015)T(0.178)S(0.682)S(0.099)R 124.91 0.00051996 4873900 1477.5 1140.8 1526.4 1893.5 1603.2 1251.5 1417.7 617.38 1506 2236.1 TRUE FALSE FALSE 1304.30969 1175.946696 1608.921801 1970.725114 1484.93513 1227.629723 1472.381164 687.6600437 1443.922043 2222.799578 0.586786907 0.529038564 0.723826753 0.886595955 0.668047243 0.552289885 0.662399426 0.309366643 0.649596148 1 11.11816216 -13.52287875 0.247036424 3.401213004 0.578838644 0.014743758 0.179809255 28.87862234 0.380433578 33.72940919 0.089013508 3.00E-14 13.52287875 -2.82237436 TGVTSTS(ph)DS(ph)EEEGDDQEGEK ddPTM_HeLa_CUDC101_4h_R1 1 TGVTSTSDSEEEGDDQEGEK 20 0 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 2 0 T(0.001)GVT(0.002)S(0.055)T(0.235)S(0.854)DS(0.853)EEEGDDQEGEK 113.14 0.00033429 58795000 7558.7 6230.9 6226.5 5890.5 6113.4 6432.4 5684.5 4768.5 6556.5 7968.1 TRUE FALSE FALSE 6672.680644 6422.866644 6563.123424 6130.740051 5662.426662 6309.712687 5903.753069 5311.326765 6286.238295 7920.705387 0.842435152 0.810895789 0.828603401 0.774014403 0.71488919 0.796609946 0.745356983 0.670562343 0.793646271 1 12.9514132 -13.52287875 0.076015092 1.861234783 0.491712332 0.279137632 0.071235957 33.87404917 0.198619558 4.95143824 0.608564265 3.00E-14 13.52287875 -1.369522452 ADQEQQDPLEYLQS(ph)DEEDDEKR ddPTM_HeLa_CUDC101_4h_R1 1 ADQEQQDPLEYLQSDEEDDEKR 22 1 Q7RTV3 Q7RTV3 ZNF367 Zinc finger protein 367 1 0 ADQEQQDPLEY(0.002)LQS(0.998)DEEDDEKR 117.03 1.73E-06 17357000 1482.9 968.64 808.16 980.53 799.91 936.99 907.15 695.06 1459.4 1791.5 TRUE FALSE FALSE 1309.07671 998.4826503 851.8515742 1020.520252 740.9022329 919.1184769 942.1390794 774.1828209 1399.242914 1780.844078 0.735087774 0.560679434 0.47834147 0.573054241 0.416039923 0.516113953 0.529040746 0.43472802 0.785718936 1 10.79834549 -7.833827124 0.554197594 0.986224378 0.466893037 0.801887377 0.077472508 0.125303909 0.091051479 0.02477375 0.018170124 1.47E-08 7.833827124 -0.519331342 TITVPVS(ph)GSPK ddPTM_HeLa_CUDC101_4h_R1 1 TITVPVSGSPK 11 0 E9PMC9;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7;Q7Z589-2 E9PMC9 C11orf30;EMSY Protein EMSY 1 0 TITVPVS(0.945)GS(0.054)PK 105.25 0.0087275 35420000 5733.2 5554.3 5671.8 5409.5 5755.1 5274.3 4536.5 4158.4 5838 6638.8 TRUE FALSE FALSE 5061.162987 5725.4214 5978.434664 5630.122792 5330.557739 5173.701515 4711.474325 4631.775447 5597.355169 6599.312122 0.766922808 0.867578513 0.905917852 0.853137825 0.80774445 0.783975878 0.713934155 0.701857309 0.848172516 1 12.68809994 -13.52287875 0.192395131 1.90033696 0.752969394 0.304922463 0.071314257 27.99093744 0.333197918 9.521869111 0.075174387 3.00E-14 13.52287875 -1.147367565 TPES(ph)QPDTPPGTPLVSQDEKR ddPTM_HeLa_CUDC101_4h_R1 1 TPESQPDTPPGTPLVSQDEKR 21 1 M0R3C8;A0A0D9SEV0;M0R000;M0QYI1;A0A0D9SFD6;A0A0D9SFL2;M0QYH2;Q96T60-2;Q96T60 M0R3C8 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase 1 0 T(0.035)PES(0.801)QPDT(0.163)PPGTPLVSQDEKR 103.99 5.35E-05 6992600 2013.3 1823.5 1691.2 1727.8 1971.1 1972.3 1622.5 1289.1 1870.3 2149.7 TRUE FALSE FALSE 1777.304026 1879.679874 1782.631388 1798.267152 1825.69588 1934.681664 1685.080368 1435.845933 1793.205442 2136.913489 0.831715479 0.879623758 0.834208496 0.841525481 0.854361157 0.905362652 0.788558066 0.671925158 0.83915678 1 11.06131279 -13.52287875 0.143781693 1.623270425 0.760726149 0.161059586 0.072372672 36.92191619 0.36653703 6.548741361 0.151216871 3.00E-14 13.52287875 -0.862544276 TPLYLQPDAYGS(ph)LDR ddPTM_HeLa_CUDC101_4h_R1 3 TPLYLQPDAYGSLDR 15 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 TPLYLQPDAYGS(1)LDR;TPLYLQPDAYGS(1)LDR;TPLYLQPDAYGS(1)LDR ;; 218.36 2.39E-32 220248000 4698.2 4340.4 4029 3926.5 5153.4 4013.3 4277.9 3060.65 4808.5 4870.1 TRUE FALSE FALSE 4147.484118 4474.122579 4246.819927 4086.639642 4773.243949 3936.752989 4442.900036 3409.062024 4610.291595 4841.132429 0.856717758 0.924189256 0.877236884 0.844149525 0.985976736 0.813188453 0.917739827 0.704186897 0.952316769 1 12.24112884 -13.52287875 0.186075228 1.575068518 0.837186476 0.315618599 0.06964526 42.70317776 0.499320406 8.944793186 0.080743238 3.00E-14 13.52287875 -0.737882043 TPPRRSRSS(ph)S(ph)S(ph)PPPK ddPTM_HeLa_CUDC101_4h_R1 1 TPPRRSRSSSSPPPK 15 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 TPPRRS(0.062)RS(0.362)S(0.864)S(0.864)S(0.847)PPPK 54.368 0.0031511 0 1759.3 1887.2 1976.6 1846.8 2002.6 1606.6 1455.9 1036.5 2051.9 2461.4 TRUE FALSE FALSE 1553.077521 1945.342395 2083.460975 1922.120487 1854.872188 1575.956782 1512.054551 1154.49097 1967.319814 2446.759483 0.634748749 0.79506891 0.851518504 0.785578027 0.758093389 0.644099591 0.617982503 0.471844895 0.804051165 1 11.25665658 -13.52287875 0.215280354 2.555914417 0.640098439 0.340514804 0.113839811 29.33920319 0.368342002 19.33137829 0.095181078 3.00E-14 13.52287875 -1.915815978 TS(ph)PDTLR ddPTM_HeLa_CUDC101_4h_R1 4 TSPDTLR 7 0 J3QL05;J3KP15;Q01130-2;Q01130 J3QL05 SRSF2 Serine/arginine-rich splicing factor 2 1 0 T(0.23)S(0.769)PDTLR;T(0.221)S(0.773)PDT(0.005)LR;T(0.223)S(0.762)PDT(0.015)LR;T(0.228)S(0.771)PDTLR ;;; 136.27 0.0010371 5235200000 21805.4 18391.6 19126.2 19662.9 18535.1 17860.9 18070 14341.5 21223.8 24667.1 TRUE FALSE FALSE 19249.40407 18958.2234 20160.22023 20464.83805 17167.8026 17520.23309 18766.96595 15974.07839 20348.94598 24520.37899 0.785036972 0.773161924 0.822182244 0.834605291 0.70014426 0.714517222 0.765361986 0.651461317 0.829878934 1 14.58169366 -13.52287875 0.142458404 1.907461625 0.659715538 0.443716532 0.067760906 19.6022906 0.193321778 4.974209494 0.118432085 3.00E-14 13.52287875 -1.247746087 TSQCSSPSLSAS(ph)PGSPT(ph)RPQIR ddPTM_HeLa_CUDC101_4h_R1 1 TSQCSSPSLSASPGSPTRPQIR 22 1 P37275-3;P37275-4;P37275-5;P37275;P37275-2;H0YMD3;H0YND9 P37275-3 ZEB1 Zinc finger E-box-binding homeobox 1 2 0 T(0.059)S(0.024)QCS(0.204)S(0.24)PS(0.12)LS(0.002)AS(0.351)PGS(0.298)PT(0.703)RPQIR 69.528 0.0051751 18268000 1528.4 1236.6 1241.6 1303.9 1405.3 1405.1 1370 1369.8 1306.4 1118.4 TRUE FALSE FALSE 1349.243269 1274.69818 1308.724652 1357.078678 1301.633819 1378.300059 1422.841359 1525.732495 1252.549639 1111.747707 1.213623613 1.14657145 1.177177739 1.220671443 1.170799643 1.239759749 1.279823965 1.372372963 1.126649177 1 10.11861371 -13.52287875 0.093698695 0.241746594 1.421314713 0.653917669 0.055063964 44.49520755 0.314103533 6.773065348 0.527147418 3.00E-14 13.52287875 1.179568119 TTHS(ph)PYEER ddPTM_HeLa_CUDC101_4h_R1 3 TTHSPYEER 9 0 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 TT(0.004)HS(0.996)PYEER;T(0.003)T(0.001)HS(0.996)PYEER;T(0.012)T(0.164)HS(0.824)PYEER ;; 126.03 0.0042469 103848100 5117.5 3656.83 5487.4 4972.2 4489 4382.6 4618.4 2816.53 5291.5 5671.8 TRUE FALSE FALSE 4517.634408 3769.492598 5784.065442 5174.987808 4157.855413 4299.009207 4796.533235 3137.15239 5073.38213 5638.063881 0.801274073 0.668579264 1.025895691 0.917866118 0.737461565 0.762497428 0.850741201 0.556423704 0.899844741 1 12.46098411 -13.52287875 0.071276657 1.702578499 0.532266267 0.285890323 0.117859241 196.3038569 1.085327926 23.24845648 3.237357378 3.00E-14 13.52287875 -1.170312232 VAVEELS(ph)PGGQPR ddPTM_HeLa_CUDC101_4h_R1 1 VAVEELSPGGQPR 13 0 Q9H611-2;Q9H611;Q9H611-3 Q9H611-2 PIF1 ATP-dependent DNA helicase PIF1 1 0 VAVEELS(1)PGGQPR 96.135 0.012238 5141100 1877 1477.1 1604.2 1607.5 1884 1803.7 1588 1088.1 1997.7 1927.8 TRUE FALSE FALSE 1656.980905 1522.6077 1690.927904 1673.060798 1745.021073 1769.297428 1649.249692 1211.964906 1915.35396 1916.33336 0.864662141 0.794542188 0.882376699 0.873053109 0.910604131 0.923272258 0.860627763 0.632439497 0.99948892 1 10.90413283 -13.52287875 0.137826365 1.542095632 0.785509939 0.434132058 0.075371892 59.97842565 0.57755927 8.874022246 0.235341046 3.00E-14 13.52287875 -0.756585693 (ac)MFQIPEFEPSEQEDSSSAER ddPTM_HeLa_CUDC101_4h_R1 1 MFQIPEFEPSEQEDSSSAER 20 0 Q92934;F5GYS3;A8MXU7 Q92934 BAD Bcl2-associated agonist of cell death 0 0 101.61 2.78E-06 0 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 VFDLQFSTDS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 VFDLQFSTDSPR 12 0 Q15003;C9J470;E9PHA2;C9JZP1 Q15003 NCAPH Condensin complex subunit 2 1 0 VFDLQFS(0.039)T(0.364)DS(0.596)PR 84.62 0.028523 18686000 704.42 740.08 650.69 560.97 685.84 684.16 445.18 197.26 758.09 1077.3 TRUE FALSE FALSE 621.8489554 762.8809876 685.8682696 583.8487813 635.2469496 671.1107879 462.3507417 219.715281 726.8412093 1070.892172 0.580683071 0.7123789 0.64046436 0.545198477 0.59319413 0.626683812 0.431743507 0.205170312 0.678724925 1 10.06459751 -13.52287875 0.076385995 2.590949035 0.003674233 0.531178034 0.131488312 68.95922562 0.406130196 19.12150403 2.327401435 3.00E-14 13.52287875 -2.587274801 VIFITEY(ph)MSSGS(ph)LK ddPTM_HeLa_CUDC101_4h_R1 1 VIFITEYMSSGSLK 14 0 F8W6G1;Q9UHY1 F8W6G1 NRBP1 Nuclear receptor-binding protein 2 0 VIFITEY(1)MS(0.278)S(0.278)GS(0.444)LK 117.95 0.0191 740350000 12710 10754 10116 10858 12310 10545 11168 11232 11653 10095 TRUE FALSE FALSE 11220.15307 11085.31799 10662.90156 11300.83617 11401.91582 10343.87169 11598.7535 12510.60548 11172.65841 10034.95449 1.118107021 1.10467048 1.062575976 1.126147227 1.136219983 1.030784116 1.155835187 1.246702762 1.113374098 1 13.29274645 -13.52287875 0.103316065 0.606383145 1.207210225 0.181087873 0.058969252 76.32056593 0.585518622 6.523294557 0.398430425 3.00E-14 13.52287875 0.60082708 VNPHKVS(ph)PASSVDSNIPSSQGYK ddPTM_HeLa_CUDC101_4h_R1 1 VNPHKVSPASSVDSNIPSSQGYK 23 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 VNPHKVS(0.894)PAS(0.07)S(0.033)VDS(0.004)NIPSSQGYK 75.018 0.00075539 22442000 1976.4 1398.4 2051 2124.7 2277.7 1723.1 1580.6 615.82 2125.3 2731.3 TRUE FALSE FALSE 1744.729388 1441.483046 2161.883264 2211.35445 2109.678609 1690.234738 1641.564271 685.9224596 2037.694234 2715.054106 0.642613119 0.530922402 0.796257894 0.814478962 0.777030043 0.622541825 0.604615675 0.252636755 0.75051699 1 11.40676523 -13.52287875 0.125147528 2.214031749 0.454277364 0.297666648 0.159808311 58.03134602 0.519696414 17.8648504 0.639610743 3.00E-14 13.52287875 -1.759754386 VS(ph)PDFTQESR ddPTM_HeLa_CUDC101_4h_R1 2 VSPDFTQESR 10 0 D6RE87;E7EPB1;E7EQS8;Q6N021-2;Q6N021-3;Q6N021 D6RE87 TET2 Methylcytosine dioxygenase TET2 1 0 VS(1)PDFTQESR;VS(1)PDFTQESR ; 160.52 6.22E-05 27850000 2615.1 2493.3 2076.38 2431.9 2500.5 2037.85 2108.8 2362.2 2418.6 2559.1 TRUE FALSE FALSE 2308.561942 2570.115618 2188.635384 2531.083394 2316.043097 1998.981407 2190.137122 2631.1033 2318.904284 2543.878359 0.907496985 1.010313881 0.860353788 0.994970292 0.910437831 0.785800704 0.860944123 1.034288173 0.911562566 1 11.31281397 -13.52287875 0.206152161 1.423047832 0.899095215 0 0.077397809 67.35101378 0.829500315 11.45759695 0.067941209 3.00E-14 13.52287875 -0.523952617 (ac)MMEGLDDGPDFLSEEDR ddPTM_HeLa_CUDC101_4h_R1 2 MMEGLDDGPDFLSEEDR 17 0 G3V5X9;Q9UNH7;G3V2U1;H0YJF8;G3V4Z5 G3V5X9 SNX6 "Sorting nexin-6;Sorting nexin-6, N-terminally processed" 0 0 ; ; 331.01 0 13788500 0 0 0 0 0 89.071 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 87.37211908 0 0 0 0 0 VSPS(ph)DTTPLVSR ddPTM_HeLa_CUDC101_4h_R1 1 VSPSDTTPLVSR 12 0 Q9HCK8-2;Q9HCK8;H0YJG4 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 VS(0.292)PS(0.707)DTTPLVSR 119.21 0.0035129 132110000 1087.1 1022.4 949.08 956.17 1026 937.07 835.28 820.42 1146.8 1238.9 TRUE FALSE FALSE 959.6717859 1053.898932 1000.390136 995.1667455 950.3140241 919.196951 867.4970294 913.8132965 1099.528419 1231.530968 0.779251039 0.855763241 0.812314235 0.808072855 0.77165256 0.746385576 0.704405372 0.742014063 0.892814267 1 10.26623719 -13.52287875 0.167470656 1.914847326 0.710395341 0.708373934 0.044295352 14.2610344 0.156759436 4.261203562 0.057604483 3.00E-14 13.52287875 -1.204451984 (ac)MNGMSVLMK ddPTM_HeLa_CUDC101_4h_R1 2 MNGMSVLMK 9 0 Q8NBI6-3 Q8NBI6-3 0 0 ; ; 53.17 0.016924 1568850 1470.48 1088.51 2369.7 1634.21 4341.9 4768.7 2750.6 3008.8 4182.4 1820.4 FALSE FALSE TRUE 1298.112564 1122.045703 2497.81315 1700.860147 4021.606687 4677.744993 2856.691563 3351.30963 4009.999702 1809.57218 0.71735882 0.620061314 1.380333527 0.939923904 2.222407446 2.585000502 1.57865577 1.851990027 2.215993231 1 10.82143294 -5.767855061 24.43606388 0.890287584 2.062701317 0.374723253 0.518851581 40.11685903 152798.1273 0.046790734 0.086354671 1.71E-06 5.767855061 1.172413734 VTSLANLIS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 2 VTSLANLISPVR 12 0 Q7Z628;Q7Z628-2 Q7Z628 NET1 Neuroepithelial cell-transforming gene 1 protein 1 0 VTSLANLIS(1)PVR;VTS(0.001)LANLIS(0.999)PVR ; 98.253 0.013076 21261800 2560.5 2341.5 2286.29 2324.8 3071.3 2486.8 2096.73 1059.62 2478.8 3133 TRUE FALSE FALSE 2260.362071 2413.63884 2409.893753 2419.615393 2844.736318 2439.368433 2177.601578 1180.242858 2376.622815 3114.364777 0.725785909 0.775001971 0.773799451 0.776920999 0.913424252 0.783263557 0.699212114 0.378967444 0.763116393 1 11.60472222 -13.52287875 0.040819097 2.228905143 7.72E-14 0.271311842 0.130142471 465.8035978 1.51691623 72.83236874 23.13535491 3.00E-14 13.52287875 -2.228905143 YLGSPIT(ph)TVPK ddPTM_HeLa_CUDC101_4h_R1 1 YLGSPITTVPK 11 0 D6RJC2;P30307-4;P30307-3;P30307-2;P30307;A0A3B3IT42 D6RJC2 CDC25C M-phase inducer phosphatase 3 1 0 YLGS(0.235)PIT(0.685)T(0.08)VPK 107.06 0.037831 44099000 2176.3 1824.8 1770.1 1987.8 2012.1 1789.1 2012.1 1300.3 2371.4 2465.2 TRUE FALSE FALSE 1921.197413 1881.019925 1865.79696 2068.871076 1863.671392 1754.975898 2089.707371 1448.320896 2273.649888 2450.536881 0.78399041 0.767595028 0.761382934 0.844252169 0.760515545 0.716159758 0.852754916 0.591021873 0.927817045 1 11.25888214 -13.52287875 0.182533537 2.049745675 0.709773269 0.586227629 0.069320077 22.12694809 0.255978093 8.210019428 0.079945346 3.00E-14 13.52287875 -1.339972407 YQEDSDPERS(ph)DYEEQQLQKEEEAR ddPTM_HeLa_CUDC101_4h_R1 2 YQEDSDPERSDYEEQQLQKEEEAR 24 2 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 Y(0.199)QEDS(0.342)DPERS(0.348)DY(0.112)EEQQLQKEEEAR;Y(0.002)QEDS(0.053)DPERS(0.77)DY(0.176)EEQQLQKEEEAR ; 63.706 0.0017349 79569000 5714.2 5582.7 5362.5 5333.8 6066.5 5260.2 4362.7 3883.7 6258.6 6742.9 TRUE FALSE FALSE 5044.390138 5754.69637 5652.412971 5551.335419 5618.986381 5159.870449 4530.9708 4325.80471 6000.617859 6702.792931 0.752580333 0.858552014 0.843292196 0.82821228 0.838305232 0.769809019 0.675982512 0.645373467 0.89524142 1 12.71054665 -13.52287875 0.159386151 1.846413682 0.702015709 0.565689393 0.065217975 31.5778529 0.336319042 8.426695562 0.136380595 3.00E-14 13.52287875 -1.144397972 (ac)MHDECT(ph)PQQT(ph)MS(ph)SIQDTK ddPTM_HeLa_CUDC101_4h_R1 1 MHDECTPQQTMSSIQDTK 18 0 Q6ZMT9 Q6ZMT9 DTHD1 Death domain-containing protein 1 3 0 MHDECT(0.981)PQQT(0.67)MS(0.67)S(0.67)IQDT(0.01)K 41.412 0.0033358 0 474.67 462.92 516.17 346.31 430.3 548.36 337 259.58 611.91 621.71 TRUE FALSE FALSE 419.0299022 477.1820165 544.0757115 360.4340187 398.5576263 537.9009466 349.9982029 289.1295379 586.6868108 618.0120413 0.678028702 0.772124141 0.880364257 0.583215204 0.644902687 0.870372923 0.5663291 0.467838033 0.949312912 1 9.271491137 -13.52287875 0.149636888 2.168796122 0.567852896 0.551104451 0.114258817 40.2878933 0.411278117 13.91750203 0.280896855 3.00E-14 13.52287875 -1.600943226 AEGVS(ph)TPLAGR ddPTM_HeLa_CUDC101_4h_R1 1 AEGVSTPLAGR 11 0 P29590;P29590-11 P29590;P29590-11 PML Protein PML 1 0 AEGVS(0.5)T(0.5)PLAGR 92.943 0.020799 15388000 3017.7 2537.5 2426.2 2944.1 2987.7 2751.2 2428.9 2169.7 2839.4 3047.4 TRUE FALSE FALSE 2663.969781 2615.677367 2557.367711 3064.173123 2767.303323 2698.725444 2522.583487 2416.689878 2722.35873 3029.273929 0.879408678 0.863466767 0.844218044 1.011520647 0.913520331 0.890881943 0.83273535 0.797778588 0.898683577 1 11.56475633 -13.52287875 0.201084945 1.572247442 0.858635744 0.080475757 0.06221088 39.25344782 0.477779322 8.800731118 0.057939656 3.00E-14 13.52287875 -0.713611697 (ac)MNVDHEVNLLVEEIHR ddPTM_HeLa_CUDC101_4h_R1 4 MNVDHEVNLLVEEIHR 16 0 Q5SZC9;Q9P1F3 Q5SZC9 ABRACL Costars family protein ABRACL 0 0 ;;; ;;; 110.57 6.78E-11 12939400 221.94 200.68 163.07 436.62 364.143 374.425 350.39 386.57 307.894 363.175 FALSE FALSE TRUE 195.9245296 206.8627129 171.8860575 454.4272508 337.2808964 367.283467 363.9046597 430.5755662 295.202479 361.0148189 0.542704951 0.573003384 0.476119119 1.258749578 0.934257761 1.017363963 1.00800477 1.192681141 0.817701832 1 8.495914248 -6.253929709 24.99968685 0.738387727 1.066266557 0.573256088 0.168938726 516.1078681 1718121.605 0.033450581 0.05476307 5.57E-07 6.253929709 0.327878831 AGMSSNQSISS(ph)PVLDAVPR ddPTM_HeLa_CUDC101_4h_R1 5 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AGMS(0.021)S(0.019)NQS(0.043)IS(0.167)S(0.75)PVLDAVPR;AGMS(0.001)SNQS(0.004)IS(0.075)S(0.919)PVLDAVPR;AGMS(0.013)S(0.016)NQS(0.258)IS(0.158)S(0.556)PVLDAVPR;AGMSSNQS(0.001)IS(0.005)S(0.994)PVLDAVPR;AGMSSNQS(0.002)IS(0.066)S(0.932)PVLDAVPR ;;;; 202.84 2.19E-17 1262998000 11599.2 10664.5 9298.1 9265.3 11009.7 10171.3 8497.5 8666.4 12015.7 12548.9 TRUE FALSE FALSE 10239.55936 10993.0606 9800.783411 9643.178982 10197.53637 9977.299399 8825.251421 9652.947945 11520.40776 12474.25858 0.820855147 0.881259638 0.785680635 0.773046263 0.81748637 0.799831055 0.707477031 0.773829393 0.923534468 1 13.60666645 -13.52287875 0.140039769 1.772056048 0.707592857 0.750290087 0.040217385 17.3592779 0.169106745 3.682195726 0.092737096 3.00E-14 13.52287875 -1.064463191 (ac)MPTMRR ddPTM_HeLa_CUDC101_4h_R1 1 MPTMRR 6 1 Q4G1C1;Q9Y2Q0-3;Q9Y2Q0-2;Q9Y2Q0 Q4G1C1 ATP8A1 Phospholipid-transporting ATPase IA 0 0 47.045 0.0033727 0 620.2 388.23 423.02 560.24 538.88 483.05 244.64 318.51 382.94 427.95 FALSE FALSE TRUE 547.5010962 400.1909061 445.8897408 583.0890088 499.127896 473.8366261 254.0758467 354.7678909 367.1550511 425.4045344 1.287012836 0.940730232 1.04815465 1.370669473 1.173301777 1.113849496 0.597257025 0.833954183 0.863072726 1 8.732691601 -4.774006523 24.07297644 1.136414422 0.715605682 0.476938662 0.157112897 66.96391583 128274.2197 0.020751103 0.062931423 1.68E-05 4.774006523 -0.42080874 DLIDNS(ph)FNR ddPTM_HeLa_CUDC101_4h_R1 2 DLIDNSFNR 9 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 DLIDNS(1)FNR;DLIDNS(1)FNR ; 103.88 0.014105 16447200 3426.3 2806.2 2970.09 2907.1 3387.9 3012 2806.8 2345.98 3881.3 3450.6 TRUE FALSE FALSE 3024.674308 2892.655696 3130.662049 3025.664104 3137.981367 2954.551118 2915.059216 2613.03688 3721.311171 3430.075678 0.881809789 0.843321246 0.912709323 0.882098352 0.914843188 0.861366161 0.849852741 0.761801524 1.084906434 1 11.74402469 -13.52287875 0.120318242 1.464014639 0.791845837 0.710172684 0.045533884 39.04256713 0.339072974 4.392997923 0.176669736 3.00E-14 13.52287875 -0.672168802 (ac)MQNDAGEFVDLYVPR ddPTM_HeLa_CUDC101_4h_R1 2 MQNDAGEFVDLYVPR 15 0 Q8WVC2;P63220;Q9BYK1;Q9BYK2 Q8WVC2 RPS21 40S ribosomal protein S21 0 0 ; ; 134.2 3.08E-05 4383600 411.382 326.28 132.33 400.47 574.05 538.29 177.67 555.337 272.48 398.41 FALSE FALSE TRUE 363.1604256 336.3323001 139.4841601 416.8028976 531.7034752 528.0230151 184.5227914 618.5543193 261.2482591 396.0402396 0.916978603 0.849237695 0.352196939 1.052425627 1.34254912 1.333255973 0.465919301 1.56184715 0.659650795 1 8.629503212 -4.223167005 23.32033661 0.943700584 1.561851014 0.277116725 0.315324829 9444.15145 5754295.811 0.040455059 13.37678095 5.98E-05 4.223167005 0.61815043 EKEEETKTS(ph)NGDLSDSTVSADPVVK ddPTM_HeLa_CUDC101_4h_R1 1 EKEEETKTSNGDLSDSTVSADPVVK 25 2 A0A087X256;Q2M389 A0A087X256 KIAA1033 WASH complex subunit 7 1 0 EKEEET(0.029)KT(0.112)S(0.363)NGDLS(0.3)DS(0.07)T(0.083)VS(0.044)ADPVVK 42.322 0.030424 44791000 3671.1 3042.3 2770.6 3087.8 3461.4 3184.4 3607.6 2865.7 2892.7 2649.4 TRUE FALSE FALSE 3240.779223 3136.029657 2920.387017 3213.733831 3206.059418 3123.662876 3746.74634 3191.919704 2773.461682 2633.641251 1.230531767 1.190758102 1.108878066 1.220262566 1.217348573 1.186062405 1.422648715 1.211979689 1.053090158 1 11.36284312 -13.52287875 0.167100223 0.084424649 1.294036406 0.569428131 0.071585197 29.87904767 0.327981973 8.941125909 0.121862993 3.00E-14 13.52287875 1.209611758 EPSAPSIPTPAY(ph)QSSPAGGHAPTPPTPAPR ddPTM_HeLa_CUDC101_4h_R1 1 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPR 30 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 1 0 EPSAPS(0.002)IPT(0.088)PAY(0.833)QS(0.032)S(0.045)PAGGHAPTPPTPAPR 73.753 0.00025963 83597000 1977.1 1631.3 1341.5 1357.8 2116.8 1988.1 1457.6 838.58 1728.8 2152.5 TRUE FALSE FALSE 1745.347335 1681.558419 1414.025548 1413.176953 1960.647881 1950.180305 1513.82012 934.0405575 1657.538132 2139.696834 0.815698424 0.785886296 0.660853222 0.660456627 0.91632041 0.911428327 0.707492807 0.436529392 0.774660272 1 11.06319069 -13.52287875 0.056077719 2.069698187 0.257159307 0.160076783 0.140672687 254.8574088 1.126223674 39.13601557 8.187079405 3.00E-14 13.52287875 -1.812538879 ETDSPS(ph)TPGKDQR ddPTM_HeLa_CUDC101_4h_R1 1 ETDSPSTPGKDQR 13 1 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 0 ETDS(0.008)PS(0.934)T(0.058)PGKDQR 144.12 2.37E-05 0 2091.9 1972.6 2001 1951.4 1711.9 1808.8 1606.2 1326.1 2460.2 2510.9 TRUE FALSE FALSE 1846.690653 2033.373468 2109.180113 2030.986527 1585.616548 1774.300154 1668.151672 1477.057864 2358.789515 2495.965055 0.739870396 0.814664237 0.845035914 0.813707917 0.635271934 0.710867386 0.668339354 0.591778263 0.945041081 1 11.28538202 -13.52287875 0.09042059 1.91994219 0.476719271 0.790700486 0.057380597 52.20490383 0.357301727 9.396490952 0.795099089 3.00E-14 13.52287875 -1.44322292 GLLYDS(ph)DEEDEERPAR ddPTM_HeLa_CUDC101_4h_R1 11 GLLYDSDEEDEERPAR 16 1 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 0 GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR ;;;;;;;;;; 199.33 1.05E-15 7622302100 29378.4 26614.51 25400.78 25910.77 28028.77 26093.2 23653.74 23081.88 28166.06 29407.4 TRUE FALSE FALSE 25934.70849 27434.47151 26774.023 26967.5232 25961.14348 25595.51568 24566.07268 25709.42792 27005.04309 29232.48348 0.887187998 0.938492671 0.915899705 0.922519061 0.8880923 0.875584714 0.840368992 0.879481483 0.92380256 1 14.83528478 -13.52287875 0.165417613 1.429613015 0.859166332 0.411421758 0.031796103 22.46932564 0.245084595 3.130790801 0.044290983 3.00E-14 13.52287875 -0.570446683 HAPS(ph)PEPAVQGTGVAGVPEESGDAAAIPAK ddPTM_HeLa_CUDC101_4h_R1 4 HAPSPEPAVQGTGVAGVPEESGDAAAIPAK 30 0 P13051 P13051 UNG Uracil-DNA glycosylase 1 0 HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAK;HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAK;HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAK;HAPS(0.995)PEPAVQGT(0.005)GVAGVPEESGDAAAIPAK ;;; 129.75 7.71E-15 1026598000 18593.4 16725.1 16659.6 16228.3 17181.1 15475.2 14445.6 14411.2 18178 20044.4 TRUE FALSE FALSE 16413.90984 17240.38051 17560.26837 16890.16022 15913.68448 15180.03634 15002.77163 16051.71276 17428.69515 19925.17502 0.823777449 0.865256164 0.881310621 0.847679391 0.798672256 0.761852096 0.752955576 0.805599587 0.874707255 1 14.28230478 -13.52287875 0.145740937 1.690655527 0.743109736 0.484571569 0.048709775 20.48781607 0.205343827 4.0573879 0.089547859 3.00E-14 13.52287875 -0.947545791 (ac)MSLDILGLMK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 MSLDILGLMKK 11 1 A0A2U3TZU4 A0A2U3TZU4 0 1 MSLDILGLMK(1)K 47.187 0.037846 4797300 814.27 1040 899.92 1237.8 1466 1614.2 1406.6 1113.4 1401.1 1447.3 FALSE TRUE FALSE 718.822505 1072.041167 948.5723973 1288.282834 1357.856101 1583.411824 1460.853033 1240.144955 1343.346065 1438.691395 0.499636341 0.745150191 0.65933 0.895454604 0.943813319 1.100591711 1.015404025 0.861995116 0.93372774 1 10.49054145 -5.98280585 3.005555374 0.749094129 0.99172348 0.329027895 0.141492154 0.283857304 5.261702128 0.029688021 0.055156637 1.04E-06 5.98280585 0.24262935 VVQPQEEIATK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VVQPQEEIATKK 12 1 E9PIM3;F8WAA7;Q96HW7-2;Q96HW7 E9PIM3 INTS4 Integrator complex subunit 4 0 1 ; VVQPQEEIATK(1)K;VVQPQEEIATK(1)K 241.92 3.20E-31 30517000 3829.5 3692.3 3755.1 4087.3 4122.6 4072.9 4555.3 4687.5 1875.35 2061.54 FALSE TRUE FALSE 3380.611815 3806.055387 3958.112065 4253.997761 3818.484011 3995.216218 4730.999447 5221.106052 1798.047279 2049.277868 1.649660042 1.857266623 1.93146675 2.075852097 1.863331503 1.949572715 2.30861784 2.54777848 0.877405308 1 11.0008999 -7.722379108 0.118198371 3.06E-18 3.208245701 0.927541478 0.133355221 1.519705726 0.141103068 1.947735779 1.633482667 1.90E-08 7.722379108 3.208245701 HEHPPNPPVS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 2 HEHPPNPPVSPGK 13 0 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 HEHPPNPPVS(1)PGK;HEHPPNPPVS(1)PGK ; 96.143 0.0011571 15549000 8848.4 7810.6 7828.6 8253 7633.5 7524.1 6932.3 5852 8655.9 9633.9 TRUE FALSE FALSE 7811.203965 8051.235328 8251.837796 8589.593013 7070.391913 7380.590329 7199.681133 6518.168025 8299.100138 9576.597134 0.815655483 0.840719852 0.861667008 0.896935821 0.738298982 0.77069028 0.75179952 0.680635087 0.866602199 1 13.2252974 -13.52287875 0.057157767 1.824572285 0.415577633 0.584096063 0.056148583 114.6957513 0.516085313 13.87016256 2.817973662 3.00E-14 13.52287875 -1.408994652 HKSGSMEEDVDT(ph)SPGGDYYTSPSS(ph)PTSSSR ddPTM_HeLa_CUDC101_4h_R1 1 HKSGSMEEDVDTSPGGDYYTSPSSPTSSSR 30 1 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 2 0 HKS(0.265)GS(0.333)MEEDVDT(0.339)S(0.063)PGGDY(0.001)Y(0.001)T(0.006)S(0.012)PS(0.25)S(0.281)PT(0.281)S(0.114)S(0.047)S(0.007)R 57.041 0.0035257 7601600 1266.6 1080.5 1072.2 1250.2 1471.5 1315.7 985.99 646.19 1467 1535.7 TRUE FALSE FALSE 1118.131068 1113.788924 1130.166375 1301.18856 1362.950377 1290.605215 1024.019965 719.7496576 1406.529639 1526.565588 0.732448757 0.72960437 0.740332668 0.852363351 0.892821368 0.84543057 0.670799848 0.471482957 0.921368626 1 10.57607386 -13.52287875 0.216148432 2.314692984 0.707796367 0.383370144 0.112100111 37.11671431 0.466774098 20.62287285 0.099776342 3.00E-14 13.52287875 -1.606896617 (ac)NNAGHGPTRR ddPTM_HeLa_CUDC101_4h_R1 1 NNAGHGPTRR 10 1 Q11130 Q11130 FUT7 "Alpha-(1,3)-fucosyltransferase 7" 0 0 52.482 0.0042273 353610 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 (ac)NSMDIR ddPTM_HeLa_CUDC101_4h_R1 1 NSMDIR 6 0 M0R1G2 M0R1G2 ADGRE3 0 0 44.803 0.0033528 0 219.58 284.91 352.89 376.15 332.59 273.73 215.64 184.13 356.23 194.62 FALSE FALSE TRUE 193.8411653 293.6877394 371.9683008 391.4910229 308.0554983 268.5090563 223.957307 205.0906149 341.5460486 193.4623916 1.001957867 1.518061144 1.922690492 2.023602725 1.592327562 1.387913455 1.157627098 1.06010586 1.765438987 1 7.595909329 -7.255654171 6.815384031 1.000478308 1.542001155 0 0.369935674 0.107694388 30.44385521 0.052333568 0.062285954 5.55E-08 7.255654171 0.541522847 LLLAEDS(ph)EEEVDFLSER ddPTM_HeLa_CUDC101_4h_R1 4 LLLAEDSEEEVDFLSER 17 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER ;;; 200.81 1.08E-16 257580000 3579.15 3272.699 3743.09 3045.4 3311.37 3127.49 2935.31 2458.1 3278.99 4221.26 TRUE FALSE FALSE 3159.607463 3373.526977 3945.452768 3169.604575 3067.096832 3067.838339 3048.52589 2737.920168 3143.828644 4196.151758 0.752977405 0.803957333 0.940255023 0.755359853 0.730930865 0.731107576 0.726505157 0.652483591 0.749217098 1 12.03485114 -13.52287875 0.155463914 1.906851831 0.678862326 0.056025999 0.097487048 28.83240083 0.302065037 8.005508724 0.141529405 3.00E-14 13.52287875 -1.227989505 QKSDAEEDGGT(ph)VS(ph)QEEEDRKPK ddPTM_HeLa_CUDC101_4h_R1 1 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 2 0 QKS(0.026)DAEEDGGT(0.984)VS(0.99)QEEEDRKPK 63.578 0.012099 16610000 5283.2 5757.2 5014.5 5545.7 4016 4383.7 4065.4 4495.3 4552.1 6584.2 TRUE FALSE FALSE 4663.911305 5934.572508 5285.599038 5771.877617 3719.747681 4300.088226 4222.20384 5007.026781 4364.460511 6545.036886 0.712587475 0.906728657 0.807573606 0.881870907 0.568331049 0.656999846 0.645100083 0.76501124 0.666835128 1 12.67618561 -13.52287875 0.173278309 2.085349383 0.66245508 0 0.13883871 35.01857655 0.393037223 12.90697478 0.153579094 3.00E-14 13.52287875 -1.422894303 REDFQDISVPVQEDELSKVEESSEIS(ph)PEPK ddPTM_HeLa_CUDC101_4h_R1 3 REDFQDISVPVQEDELSKVEESSEISPEPK 30 2 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 REDFQDISVPVQEDELS(0.185)KVEES(0.07)S(0.07)EIS(0.676)PEPK;REDFQDISVPVQEDELS(0.056)KVEES(0.078)S(0.078)EIS(0.788)PEPK;REDFQDISVPVQEDELS(0.149)KVEES(0.268)S(0.268)EIS(0.314)PEPK ;; 76.606 8.82E-06 129073000 10987.9 9876 9401.5 8759.8 10868.4 8653.6 8634.8 7637.2 10824.6 13000.5 TRUE FALSE FALSE 9699.915019 10180.26785 9909.773528 9117.062507 10066.65978 8488.546998 8967.847128 8506.587977 10378.40541 12923.17245 0.750583114 0.787752999 0.766822045 0.705481765 0.778961964 0.656846996 0.693935422 0.658243014 0.803084958 1 13.65767265 -13.52287875 0.160059764 2.103640008 0.63803226 0.444104006 0.070359153 11.1243735 0.118806102 3.821793156 0.060926019 3.00E-14 13.52287875 -1.465607748 YSHSGSSS(ph)PDTK ddPTM_HeLa_CUDC101_4h_R1 1 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 YSHS(0.001)GS(0.035)S(0.084)S(0.88)PDTK 146.5 8.70E-07 0 1049.8 378.91 624.29 504.66 436.85 475.17 498.28 183.73 1126.5 1332.8 TRUE FALSE FALSE 926.7440354 390.583768 658.0410058 525.2422161 404.6244458 466.1069239 517.4988265 204.6450805 1080.065193 1324.872446 0.699496799 0.294808583 0.496682535 0.396447384 0.305406341 0.351812678 0.390602754 0.154463987 0.815222021 1 10.37163775 -7.678043662 0.522294079 0.992933111 0.286260532 0.822174199 0.106036291 0.169176619 0.11184193 0.042736384 0.035347333 2.10E-08 7.678043662 -0.706672579 REDIFYTS(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 REDIFYTSK 9 1 B4DK69;P52895;S4R3P0;P52895-2;A0A0A0MSS8;P42330;S4R3Z2;P17516;S4R3D5;A6NHU4;Q04828;H0Y804 B4DK69;A0A0A0MSS8;Q04828 AKR1C2;AKR1C3;AKR1C4;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C3;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C1 1 0 REDIFYT(0.319)S(0.681)K;REDIFYT(0.036)S(0.964)K ; 105.36 0.0018186 12985000 5184.2 4106 4791.7 4544.5 4730.9 4790.1 4207.5 3368.9 4120 5426.4 TRUE FALSE FALSE 4576.515935 4232.500993 5050.753796 4729.844353 4381.910932 4698.736823 4369.784684 3752.401958 3950.171856 5394.123531 0.848426238 0.784650364 0.936343739 0.876851323 0.812349014 0.871084393 0.810100966 0.695646278 0.732310232 1 12.39717285 -13.52287875 0.121633761 1.577057537 0.741829168 0 0.09914229 46.60192674 0.408195985 6.59488429 0.256927019 3.00E-14 13.52287875 -0.835228369 S(ph)GEVTLTK ddPTM_HeLa_CUDC101_4h_R1 1 SGEVTLTK 8 0 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 0 S(1)GEVTLTK 92.239 0.026376 8827200 2335.5 1619.1 1830.1 2067.8 2387.3 2291 2014.8 1076.1 2454.8 2583.7 TRUE FALSE FALSE 2061.73623 1668.982552 1929.040742 2152.133822 2211.193635 2247.302992 2092.511511 1198.598874 2353.612105 2568.332037 0.802752993 0.649831302 0.751086975 0.837949996 0.860945393 0.875004851 0.814735587 0.466683769 0.916397129 1 11.32661601 -13.52287875 0.183283253 2.04125157 0.717083139 0.299622347 0.118511859 43.67444958 0.506416766 16.09889528 0.154262213 3.00E-14 13.52287875 -1.324168431 S(ph)NTPESIAET(ph)PPAR ddPTM_HeLa_CUDC101_4h_R1 1 SNTPESIAETPPAR 14 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 2 0 S(0.751)NT(0.235)PES(0.014)IAET(1)PPAR 135.69 0.0024346 13843000 1946.8 1898.9 1794.3 1906.2 1751.8 2007 1621.5 1340.3 1688 2250 TRUE FALSE FALSE 1718.599055 1957.402858 1891.305285 1983.943075 1622.573204 1968.719819 1684.041798 1492.874334 1618.419926 2236.6169 0.768392233 0.87516233 0.845609852 0.887028563 0.725458707 0.880222187 0.752941551 0.667469844 0.72360176 1 11.12710245 -13.52287875 0.239359327 2.193457916 0.774292387 0 0.110353592 26.2868263 0.343127486 14.79281761 0.045248064 3.00E-14 13.52287875 -1.419165529 S(ph)TLSPPEASPGPPAAPR ddPTM_HeLa_CUDC101_4h_R1 1 STLSPPEASPGPPAAPR 17 0 Q6NUJ5-2;Q6NUJ5 Q6NUJ5-2 PWWP2B PWWP domain-containing protein 2B 1 0 S(0.58)T(0.013)LS(0.408)PPEASPGPPAAPR 169.98 5.23E-07 24206000 2635.7 2380.7 2099.7 2359.5 2372.2 2291.3 2040.5 2073.9 2463.9 2557.1 TRUE FALSE FALSE 2326.747241 2454.046545 2213.216133 2455.730609 2197.207532 2247.59727 2119.202769 2309.984393 2362.336999 2541.890255 0.915361014 0.96544158 0.870696966 0.966104104 0.864399054 0.884222781 0.833711355 0.908766375 0.92936231 1 11.31168603 -13.52287875 0.081980942 1.363494891 0.788262997 0.314129758 0.041151357 80.8686832 0.507573224 5.30170146 0.557632708 3.00E-14 13.52287875 -0.575231894 S(ph)VSPSPVPLLFQPDQNAPPIR ddPTM_HeLa_CUDC101_4h_R1 2 SVSPSPVPLLFQPDQNAPPIR 21 0 Q02241-2;Q02241-3 Q02241-2 KIF23 Kinesin-like protein KIF23 1 0 S(0.477)VS(0.388)PS(0.136)PVPLLFQPDQNAPPIR;S(0.394)VS(0.394)PS(0.212)PVPLLFQPDQNAPPIR ; 88.709 0.00048218 38862000 2917.17 2531.16 2794.09 2520.66 2503.17 2748.88 2325.55 1918.78 2428.73 3324.01 TRUE FALSE FALSE 2575.223755 2609.142039 2945.146957 2623.46341 2318.516136 2696.449694 2415.247243 2137.206159 2328.616721 3304.238641 0.779369784 0.789634867 0.891323926 0.793969109 0.701679385 0.816057793 0.730954239 0.646807447 0.704736242 1 11.69010217 -13.52287875 0.149166992 1.864984466 0.685046129 0 0.106402414 26.10291266 0.265893427 6.620635454 0.135067984 3.00E-14 13.52287875 -1.179938337 SAS(ph)PDYNR ddPTM_HeLa_CUDC101_4h_R1 3 SASPDYNR 8 0 Q14669;Q14669-2;Q14669-3;G5E9G6;F8W9P3;C9JLJ5;C9JSX9;C9JLD7 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 S(0.001)AS(0.988)PDY(0.011)NR;S(0.075)AS(0.925)PDYNR;S(0.007)AS(0.993)PDYNR ;; 118.03 0.0079043 59494000 11520.5 6460 13244.7 13689.9 8781.6 8629.4 8828.3 3891.6 11695.5 15586.6 TRUE FALSE FALSE 10170.08445 6659.024943 13960.74855 14248.23329 8133.798863 8464.808573 9168.810488 4334.604014 11213.40654 15493.89021 0.656393218 0.429783925 0.90104863 0.919603347 0.524968149 0.546332035 0.591769424 0.279762148 0.723730863 1 13.9194118 -13.52287875 0.063065607 2.460576451 3.61E-11 0.294631841 0.183715247 187.8152924 0.92702605 42.54047043 7.371684895 3.00E-14 13.52287875 -2.460576451 SGAMS(ph)PMSWNSDASTSEAS ddPTM_HeLa_CUDC101_4h_R1 1 SGAMSPMSWNSDASTSEAS 19 0 Q13158 Q13158 FADD FAS-associated death domain protein 1 0 S(0.006)GAMS(0.993)PMS(0.001)WNSDASTSEAS 99.021 0.0033085 3409800 1350.7 1534.7 1024.5 969.86 1434.6 1182.8 948.95 1112.6 1787.7 1500.2 TRUE FALSE FALSE 1192.372994 1581.982288 1079.887569 1009.415083 1328.772416 1160.240061 985.5513194 1239.253887 1714.010249 1491.276744 0.799565204 1.060824086 0.724136263 0.676879786 0.891030067 0.77801794 0.660877549 0.831001953 1.149357593 1 10.5423323 -13.52287875 0.137680432 1.737077044 0.707613663 0.470009671 0.114506748 59.19503177 0.569574548 11.90204516 0.316723972 3.00E-14 13.52287875 -1.029463382 SPGAGSLGS(ph)PASQR ddPTM_HeLa_CUDC101_4h_R1 3 SPGAGSLGSPASQR 14 0 E9PC47;P53667-4;P53667-2;P53667 E9PC47 LIMK1 LIM domain kinase 1 1 0 SPGAGSLGS(1)PASQR;SPGAGSLGS(0.994)PAS(0.006)QR;SPGAGS(0.002)LGS(0.998)PASQR ;; 225.21 6.87E-33 61022000 4974.1 3826.69 4083.99 3886.82 4442.89 3498.06 3552.59 3163.58 4391.47 5303.7 TRUE FALSE FALSE 4391.043538 3944.585783 4304.782853 4045.34132 4115.146856 3431.340334 3689.614586 3523.70916 4210.451748 5272.153357 0.832874775 0.748192535 0.816513208 0.767303424 0.780543846 0.650842284 0.699830664 0.668362417 0.798620879 1 12.36417662 -13.52287875 0.058570665 2.096250384 0.270151699 0.425752078 0.071684196 54.60865963 0.251452452 8.704527638 1.702240583 3.00E-14 13.52287875 -1.826098686 TAVAPSAVNLADPRT(ph)PTAPAVNLAGAR ddPTM_HeLa_CUDC101_4h_R1 2 TAVAPSAVNLADPRTPTAPAVNLAGAR 27 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 TAVAPS(0.005)AVNLADPRT(0.715)PT(0.281)APAVNLAGAR;TAVAPS(0.001)AVNLADPRT(0.924)PT(0.075)APAVNLAGAR ; 93.21 3.47E-06 166773000 2775.2 2372 2568.4 2588.22 3255.1 2915.2 2164.58 1516.78 3127.9 3273.1 TRUE FALSE FALSE 2449.895263 2445.078508 2707.255473 2693.778799 3014.977758 2859.597417 2248.068576 1689.444104 2998.966638 3253.631456 0.752972577 0.751492153 0.832071951 0.82792991 0.926650052 0.878894078 0.69094137 0.519248762 0.921729052 1 11.66783513 -13.52287875 0.231893848 2.26957904 0.747361445 0.329838618 0.107715488 39.34890187 0.508329629 22.75804296 0.080508133 3.00E-14 13.52287875 -1.522217594 TKFAS(ph)DDEHDEHDENGATGPVK ddPTM_HeLa_CUDC101_4h_R1 2 TKFASDDEHDEHDENGATGPVK 22 1 P05455 P05455 SSB Lupus La protein 1 0 T(0.28)KFAS(0.703)DDEHDEHDENGAT(0.017)GPVK;T(0.099)KFAS(0.89)DDEHDEHDENGAT(0.011)GPVK ; 84.576 0.00041955 121934000 6276.1 4454.6 6065.5 5590.2 6283.2 5340 5066.1 4698.6 5847.2 6066 TRUE FALSE FALSE 5540.425072 4591.840946 6393.419277 5818.192519 5819.700854 5238.148397 5261.501174 5233.469632 5606.175941 6029.919162 0.918822446 0.761509536 1.060282751 0.964887316 0.965137458 0.868692972 0.872565789 0.867917047 0.92972655 1 12.55792295 -13.52287875 0.174964079 1.370366501 0.889453228 0.035621632 0.077904372 78.70305733 0.888455414 9.925961062 0.113843686 3.00E-14 13.52287875 -0.480913274 TKS(ph)PKPAESPQSATK ddPTM_HeLa_CUDC101_4h_R1 1 TKSPKPAESPQSATK 15 2 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 T(0.407)KS(0.591)PKPAES(0.002)PQSATK 50.806 0.038821 44594000 4481.3 3448.2 4415.5 4006.3 4133.3 3769.7 3586.3 2975.3 4193 4782.5 TRUE FALSE FALSE 3956.008807 3554.434955 4654.215286 4169.694231 3828.394694 3697.799253 3724.624792 3313.996125 4020.162765 4754.053477 0.832133847 0.747664066 0.978999355 0.877081895 0.805290625 0.77782029 0.783462956 0.697088525 0.845628427 1 12.21494242 -13.52287875 0.082530264 1.635373209 0.619014675 0.269182788 0.078026533 93.72150536 0.591763628 10.92111728 1.132419362 3.00E-14 13.52287875 -1.016358534 VPGEQGS(ph)DEEHCK ddPTM_HeLa_CUDC101_4h_R1 1 VPGEQGSDEEHCK 13 0 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 0 VPGEQGS(1)DEEHCK 123.1 0.0018928 7812100 471.69 609.07 448.35 414.24 468.77 483.5 291.91 376.36 524.79 668.8 TRUE FALSE FALSE 416.3992132 627.8347248 472.5891572 431.1344977 434.189771 474.2780431 303.1690665 419.2033011 503.1579341 664.8219479 0.626331929 0.94436522 0.710850715 0.648496186 0.653091813 0.713391073 0.45601543 0.630549732 0.756831112 1 9.376824201 -13.52287875 0.180317252 2.415081139 0.579714541 0.283827499 0.127198359 29.60580402 0.340132151 14.81117765 0.151267972 3.00E-14 13.52287875 -1.835366598 ELSESVQQQSTPVPLIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 ELSESVQQQSTPVPLISPK 19 0 A0A087WVZ6;A0A087WYS3;H7C4X9;A0A087WV57;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-16;Q9ULU4-4;Q9ULU4-12;Q9ULU4-14;Q9ULU4-21;Q9ULU4-8;Q9ULU4-23;Q9ULU4-17;Q9ULU4-6;Q9ULU4-3;Q9ULU4-19;Q9ULU4-18;Q9ULU4-15;Q9ULU4-2 A0A087WVZ6;Q9ULU4-2 ZMYND8 Protein kinase C-binding protein 1 1 0 ELSESVQQQSTPVPLIS(1)PK;ELSESVQQQSTPVPLIS(1)PK ; 132.36 2.62E-05 12380100 6088.3 5140.4 4487.9 4998.5 4929.2 5224.6 3776.1 3581.7 6611.7 7218.8 TRUE FALSE FALSE 5374.638703 5298.769631 4730.529449 5202.360435 4565.582736 5124.94946 3921.745442 3989.42625 6339.162928 7175.862257 0.748988555 0.738415739 0.659228017 0.724980532 0.636241691 0.714192842 0.546519053 0.555950784 0.883400865 1 12.80893648 -13.52287875 0.093652992 2.192652696 0.373465818 0.826312186 0.054981838 23.73648332 0.167491495 5.569771461 0.433999106 3.00E-14 13.52287875 -1.819186878 KVEEEQEADEEDVS(ph)EEEAESKEGTNK ddPTM_HeLa_CUDC101_4h_R1 1 KVEEEQEADEEDVSEEEAESKEGTNK 26 2 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 1 0 KVEEEQEADEEDVS(0.753)EEEAES(0.186)KEGT(0.061)NK 47.564 0.01801 8369600 1949.7 1574.1 1713.4 1930 1506.3 1386.6 1224.8 1398.9 1683.4 2717.4 TRUE FALSE FALSE 1721.159122 1622.596155 1806.031587 2008.713742 1395.18325 1360.152915 1272.040946 1558.145121 1614.009539 2701.236784 0.637174472 0.600686384 0.668594326 0.743627421 0.516497946 0.503529688 0.470910567 0.57682656 0.597507612 1 11.39940439 -13.52287875 0.155836743 2.631070099 0.450753817 0.009191071 0.144334845 16.89900883 0.177327056 8.355569955 0.146478855 3.00E-14 13.52287875 -2.180316282 NYGS(ph)PLISGSTPK ddPTM_HeLa_CUDC101_4h_R1 2 NYGSPLISGSTPK 13 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 NYGS(0.938)PLIS(0.061)GS(0.001)TPK;NYGS(0.975)PLIS(0.023)GS(0.001)T(0.001)PK ; 153.22 0.00020541 19794300 4651.1 3900.3 3810.4 3377.9 4357.8 4248.8 3775.1 2947.6 4686.3 4857 TRUE FALSE FALSE 4105.905109 4020.46362 4016.40175 3515.665363 4036.333776 4167.761219 3920.706872 3283.142869 4493.12873 4828.110348 0.850416584 0.832719911 0.831878615 0.728165909 0.836006944 0.863228244 0.812058257 0.680005765 0.930618484 1 12.23724293 -13.52287875 0.132261489 1.714750689 0.718931083 0.609505769 0.053522067 30.4613166 0.284515997 5.653120602 0.170876426 3.00E-14 13.52287875 -0.995819606 RIPSIVSS(ph)PLNS(ph)PLDR ddPTM_HeLa_CUDC101_4h_R1 1 RIPSIVSSPLNSPLDR 16 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 2 0 RIPS(0.048)IVS(0.346)S(0.607)PLNS(0.999)PLDR 76.693 0.011352 6723400 1298.3 1089.9 1404.1 1010.6 1353.9 996.23 1109.6 1079.7 1882.6 1429.5 TRUE FALSE FALSE 1146.115242 1123.478527 1480.009893 1051.816636 1254.025494 977.2285726 1152.397644 1202.608684 1804.998431 1420.99727 0.806556962 0.790626802 1.041529019 0.740196099 0.882496765 0.687706157 0.810978084 0.846313155 1.270233567 1 10.47268807 -13.52287875 0.238553573 2.067427578 0.800703065 0.448993252 0.121518358 36.53354962 0.476379975 18.26739295 0.056754814 3.00E-14 13.52287875 -1.266724513 SEES(ph)PVYSNSSVR ddPTM_HeLa_CUDC101_4h_R1 1 SEESPVYSNSSVR 13 0 H0Y8J2;Q03188 H0Y8J2 CENPC Centromere protein C 1 0 S(0.481)EES(0.518)PVYSNSSVR 204.17 3.35E-17 31651000 1590.6 1299.2 1589.4 1291.3 1479 1154.3 1166.2 1322.2 1227.2 1655 TRUE FALSE FALSE 1404.152279 1339.226812 1675.327772 1343.964795 1369.897117 1132.283651 1211.180725 1472.713903 1176.614297 1645.155986 0.853507078 0.814042451 1.018339772 0.816922411 0.832685246 0.688253065 0.736210265 0.895181925 0.715199231 1 10.68400867 -13.52287875 0.097599707 1.603427394 0.685652882 0 0.118837901 87.0357339 0.636324892 10.72905184 0.756457663 3.00E-14 13.52287875 -0.917774512 SGLEPAS(ph)SPSKGSEPR ddPTM_HeLa_CUDC101_4h_R1 2 SGLEPASSPSKGSEPR 16 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;Q9Y618-2 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 SGLEPAS(0.978)S(0.021)PS(0.001)KGSEPR;SGLEPAS(0.927)S(0.073)PSKGSEPR ; 180.1 2.19E-16 20998000 7346.4 6462.7 7023.4 5717.8 6658.1 5829.1 5586.6 5489.8 7086 7791.8 TRUE FALSE FALSE 6485.266128 6661.808127 7403.106249 5950.996598 6166.945228 5717.919629 5802.077033 6114.736641 6793.912081 7745.454027 0.837299674 0.860092656 0.955800166 0.768321208 0.796201902 0.73822911 0.749094503 0.789461356 0.877148332 1 12.91913409 -13.52287875 0.081406312 1.684443017 0.59787055 0.481559742 0.059789079 66.15577686 0.412622956 8.141490297 0.869203563 3.00E-14 13.52287875 -1.086572467 SRDAT(ph)PPVSPINMEDQER ddPTM_HeLa_CUDC101_4h_R1 2 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 1 0 S(0.443)RDAT(0.557)PPVSPINMEDQER;S(0.453)RDAT(0.547)PPVSPINMEDQER ; 78.707 0.012551 27697900 1484.34 1422.98 1257.33 1077.52 1562.88 1234.69 1121.91 1255.31 1562.07 1490.16 TRUE FALSE FALSE 1310.347915 1466.820327 1325.305063 1121.465923 1447.589456 1211.140345 1165.182445 1398.209416 1497.680813 1481.296462 0.884595318 0.990227388 0.894692654 0.757084049 0.977244929 0.817621844 0.786596387 0.943909239 1.011060819 1 10.53264469 -13.52287875 0.146800591 1.467098905 0.829876752 0.346737891 0.071524071 59.8851758 0.603269132 8.045511766 0.173290236 3.00E-14 13.52287875 -0.637222153 SVAS(ph)NQSEMEFSSLQDMPK ddPTM_HeLa_CUDC101_4h_R1 2 SVASNQSEMEFSSLQDMPK 19 0 Q8N163-2;Q8N163;G3V119;H0YB24;A0A087X2B6 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 0 S(0.05)VAS(0.806)NQS(0.143)EMEFSSLQDMPK;S(0.196)VAS(0.687)NQS(0.117)EMEFSSLQDMPK ; 129.08 2.72E-05 13858900 5668.7 5978.8 4805.5 5198.4 5841.8 4810.2 4834 4143.4 7666.3 6856.4 TRUE FALSE FALSE 5004.223579 6162.999741 5065.299866 5410.413221 5410.862053 4718.453449 5020.448999 4615.067908 7350.291869 6815.617828 0.7342289 0.904246672 0.743190125 0.793825792 0.793891646 0.69230018 0.736609523 0.677131263 1.07844836 1 12.73462873 -13.52287875 0.214036488 2.25248146 0.716567328 0.785889732 0.059325054 18.42506186 0.230750447 9.65789683 0.048763497 3.00E-14 13.52287875 -1.535914132 TDGSIS(ph)GDRQPVTVADYISR ddPTM_HeLa_CUDC101_4h_R1 2 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 T(0.016)DGS(0.269)IS(0.695)GDRQPVT(0.002)VADY(0.017)ISR;T(0.025)DGS(0.42)IS(0.552)GDRQPVT(0.003)VADYISR ; 95.183 0.0062192 180736000 3215.8 2676.2 2673.6 2529.9 3279.9 2934.5 2671.4 2874.6 2577.3 2455.1 TRUE FALSE FALSE 2838.848799 2758.65055 2818.142903 2633.080257 3037.948311 2878.529302 2774.436793 3201.832844 2471.062603 2440.496956 1.163225708 1.130364266 1.154741413 1.07891151 1.244807253 1.179484897 1.13683272 1.311959368 1.012524354 1 11.25295924 -13.52287875 0.135535639 0.380982683 1.249810045 0.645418585 0.05409866 36.17597031 0.344093566 6.026640047 0.168642436 3.00E-14 13.52287875 0.868827361 (ac)S(ph)DEFSLADALPEHSPAK ddPTM_HeLa_CUDC101_4h_R1 2 SDEFSLADALPEHSPAK 17 0 Q8NDC0 Q8NDC0 MAPK1IP1L MAPK-interacting and spindle-stabilizing protein-like 1 0 S(0.976)DEFS(0.024)LADALPEHSPAK;S(0.899)DEFS(0.099)LADALPEHS(0.002)PAK ; 134.98 8.42E-70 1338667800 4390.1 4731.2 3982.6 3879.4 4213.1 4008.1 3317.2 3367 4693.2 5291.8 TRUE FALSE FALSE 3875.499133 4876.962664 4197.911403 4037.6187 3902.308007 3931.65217 3445.145515 3750.28567 4499.74431 5260.324138 0.736741507 0.927122081 0.798032838 0.767560818 0.741837937 0.747416332 0.654930271 0.712938133 0.855411984 1 12.36093598 -13.52287875 0.172831769 1.996579246 0.689008728 0.482856679 0.071452651 24.08316956 0.269882987 8.130284013 0.097690562 3.00E-14 13.52287875 -1.307570518 AHPS(ph)PGMDSR ddPTM_HeLa_CUDC101_4h_R1 1 AHPSPGMDSR 10 0 A0A0X1KG68;Q5XG87-2;Q5XG87 A0A0X1KG68 PAPD7 Non-canonical poly(A) RNA polymerase PAPD7 1 0 AHPS(1)PGMDSR 97.911 0.01852 7137900 2103.7 1618 1977.2 1979.8 1880.1 1801.8 1634.3 1311.4 1805.5 2653.7 TRUE FALSE FALSE 1857.107475 1667.848662 2084.093413 2060.544801 1741.408769 1767.433667 1697.335498 1460.684475 1731.076526 2637.915674 0.704005626 0.632260037 0.790053084 0.781126107 0.66014573 0.670011435 0.643438119 0.553726751 0.656228909 1 11.36518273 -13.52287875 0.177192878 2.37211283 0.602333602 0 0.124883012 17.75207554 0.201897388 8.37360499 0.091497956 3.00E-14 13.52287875 -1.769779227 MLISAVS(ph)PEIR ddPTM_HeLa_CUDC101_4h_R1 1 MLISAVSPEIR 11 0 E9PMT9;A0AVK6 E9PMT9 E2F8 Transcription factor E2F8 1 0 MLIS(0.005)AVS(0.995)PEIR 87.641 0.028218 3961500 1190.2 1098.6 911.36 830.59 1244 1048.6 938.31 524.7 1375.3 1506.5 TRUE FALSE FALSE 1050.68656 1132.446564 960.6308783 864.4650503 1152.232598 1028.599702 974.500931 584.4297271 1318.609552 1497.539271 0.701608686 0.756204919 0.641472913 0.577257016 0.769417284 0.686859919 0.650734809 0.390260034 0.880517511 1 10.54837812 -13.52287875 0.128694182 2.249735266 0.481907832 0.643567609 0.093886248 31.40185057 0.287307627 10.02497024 0.32977634 3.00E-14 13.52287875 -1.767827434 S(ph)PSVS(ph)SPEPAEK ddPTM_HeLa_CUDC101_4h_R1 1 SPSVSSPEPAEK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.999)PS(0.001)VS(0.991)S(0.009)PEPAEK 145 2.47E-06 0 3391.8 3198 3149.1 3331.1 3248.8 2782.5 2313.4 2395 4454.5 4437.9 TRUE FALSE FALSE 2994.218346 3296.526589 3319.349872 3466.956656 3009.142497 2729.428448 2402.628613 2667.637119 4270.883625 4411.503173 0.678729727 0.747256992 0.752430575 0.785890097 0.682112735 0.618707126 0.544628105 0.604700261 0.968124346 1 12.10705461 -13.52287875 0.153586266 2.238175745 0.561006003 0.845495046 0.055618752 21.04870897 0.218726934 7.86373737 0.145062082 3.00E-14 13.52287875 -1.677169743 SSIPMCLLVNQHLS(ph)LLAR ddPTM_HeLa_CUDC101_4h_R1 1 SSIPMCLLVNQHLSLLAR 18 0 Q8N4E4 Q8N4E4 PDCL2 Phosducin-like protein 2 1 0 SSIPMCLLVNQHLS(1)LLAR 55.589 0.034743 9289700 1397.2 1164.2 1315.2 1397.6 1222.2 1281.5 1137.3 1043 1218.1 1477.3 TRUE FALSE FALSE 1233.422334 1200.067622 1386.30369 1454.600169 1132.040741 1257.057523 1181.166042 1161.730904 1167.889402 1468.512954 0.839912464 0.817199207 0.9440187 0.990525937 0.770875557 0.856007105 0.804327969 0.791093399 0.795287096 1 10.52014028 -13.52287875 0.205681984 1.726329298 0.824213157 0 0.090219979 36.71740712 0.451735755 10.72208305 0.064197104 3.00E-14 13.52287875 -0.902116142 TSLEASMEAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 TSLEASMEASPK 12 0 A0A0A0MRP0;Q8IWC1-2;Q8IWC1-3;Q8IWC1-4;Q8IWC1 A0A0A0MRP0 MAP7D3 MAP7 domain-containing protein 3 1 0 TSLEASMEAS(1)PK;TSLEASMEAS(1)PK ; 187.62 7.65E-11 82751800 10302.7 9851.7 9614.2 9344.3 10160.2 9765.9 8565 8156.4 9645.8 10631.6 TRUE FALSE FALSE 9095.033124 10155.2192 10133.97273 9725.400944 9410.702288 9579.631729 8895.354919 9084.891607 9248.196041 10568.36277 0.86059055 0.960907514 0.95889713 0.920237236 0.890459808 0.906444256 0.841696591 0.859630938 0.875083137 1 13.36746427 -13.52287875 0.329735791 2.106659132 0.891094801 0 0.055275264 34.33071889 0.460628201 25.55132464 0.015274596 3.00E-14 13.52287875 -1.21556433 AAEEQGDDQDS(ph)EKS(ph)KPAGSDGER ddPTM_HeLa_CUDC101_4h_R1 1 AAEEQGDDQDSEKSKPAGSDGER 23 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 2 0 AAEEQGDDQDS(1)EKS(1)KPAGS(0.001)DGER 74.308 0.0084975 11224000 3121.3 2516.7 3091.9 2736.3 2147.9 2826.1 2480 1759.8 3111.1 3493.8 TRUE FALSE FALSE 2755.425946 2594.236544 3259.057466 2847.898141 1989.453696 2772.196851 2575.654431 1960.128519 2982.859141 3473.018722 0.793380677 0.746968776 0.93839329 0.820006562 0.572831262 0.79820959 0.741618355 0.564387547 0.858866416 1 11.76197447 -13.52287875 0.041864503 2.262042539 0.025701088 0.447742164 0.0979343 313.5048297 1.046331043 49.83877255 15.38079192 3.00E-14 13.52287875 -2.236341451 ENS(ph)PAAFPDREGVPPTALFHPMPVLPK ddPTM_HeLa_CUDC101_4h_R1 1 ENSPAAFPDREGVPPTALFHPMPVLPK 27 1 A0A0J9YWJ4;K7EJD2;A0A0J9YWB6;A0A0A0MR03;Q9Y5B0-4;Q9Y5B0 A0A0J9YWJ4 CTDP1 RNA polymerase II subunit A C-terminal domain phosphatase 1 0 ENS(0.641)PAAFPDREGVPPT(0.359)ALFHPMPVLPK 44.615 0.029275 13357000 867.08 1019.1 959.97 749.16 924.34 508.53 559.82 627.57 1032.5 1212.5 TRUE FALSE FALSE 765.4421968 1050.497263 1011.868882 779.7139829 856.1532797 498.8306375 581.4124449 699.0100321 989.939913 1205.287996 0.635069958 0.871573654 0.839524566 0.646910934 0.710330877 0.413868419 0.482384664 0.579952704 0.8213306 1 10.2351622 -13.52287875 0.058640118 2.400524178 1.52E-13 0.562244739 0.115436234 161.9611218 0.746604842 33.96533208 6.629756712 3.00E-14 13.52287875 -2.400524178 SSIAPEEQSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 SSIAPEEQSKK 11 1 A0A1B0GVD3;Q6ZN17-2;Q6ZN17 A0A1B0GVD3 LIN28B Protein lin-28 homolog B 0 1 SSIAPEEQSK(1)K 100.02 0.011728 2495500 1186.1 1369.9 1392.7 1495 1367.7 1437.3 1636.5 1402.9 861.29 681.25 FALSE TRUE FALSE 1047.067156 1412.104995 1467.993575 1555.972562 1266.807496 1409.885897 1699.620353 1562.600465 825.7872616 677.1978947 1.546176035 2.085217639 2.167746808 2.297663023 1.870660712 2.081940757 2.50978387 2.30745027 1.21941794 1 9.403433678 -7.647270861 0.579013403 1.041767104 2.283141183 0.855276076 0.179792548 0.170409973 0.13309691 0.073907235 0.064293196 2.25E-08 7.647270861 1.241374079 EYPS(ph)PPPS(ph)PLRR ddPTM_HeLa_CUDC101_4h_R1 1 EYPSPPPSPLRR 12 1 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 2 0 EY(0.199)PS(0.801)PPPS(1)PLRR 66.246 0.034262 15570000 2315.6 2173.6 2041.2 1993.8 2107.1 2000.2 1868.8 1685.8 2394.3 2432.5 TRUE FALSE FALSE 2044.168878 2240.56604 2151.553446 2075.115782 1951.663431 1962.049518 1940.880242 1877.704658 2295.605941 2418.031382 0.845385587 0.926607511 0.889795502 0.858183975 0.807129074 0.81142434 0.802669583 0.776542716 0.949369788 1 11.23961725 -13.52287875 0.096415098 1.54365492 0.704749127 0.803994501 0.030699926 40.91992935 0.296059222 4.555425819 0.330943593 3.00E-14 13.52287875 -0.838905793 KS(ph)LS(ph)DSESDDSK ddPTM_HeLa_CUDC101_4h_R1 1 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 KS(0.997)LS(0.919)DS(0.078)ES(0.006)DDSK 101.72 0.019937 8642600 2686.8 2060.4 2700 2821.2 1989.8 2203.3 1933.5 1391.9 3086.6 3393.5 TRUE FALSE FALSE 2371.857377 2123.878482 2845.970167 2936.26073 1843.016418 2161.275723 2008.075743 1550.34827 2959.369042 3373.315311 0.703123532 0.629611609 0.843671553 0.870437673 0.54635166 0.640697807 0.595282551 0.459591863 0.877288 1 11.71995146 -13.52287875 0.060186413 2.313477286 0.087809602 0.612062594 0.102195141 139.9039003 0.660933941 27.70700377 5.187382786 3.00E-14 13.52287875 -2.225667685 S(ph)PTKTDPKNEEEEK ddPTM_HeLa_CUDC101_4h_R1 1 SPTKTDPKNEEEEK 14 2 A0A0A0MRN4;Q5BKZ1-3;Q5BKZ1 A0A0A0MRN4 ZNF326 DBIRD complex subunit ZNF326 1 0 S(0.665)PT(0.256)KT(0.078)DPKNEEEEK 73.597 0.03258 70389000 4891.9 3960.6 4481 4053 4269.2 3955.7 4043.7 3494.4 4695.6 4929.6 TRUE FALSE FALSE 4318.478898 4082.621392 4723.256414 4218.298859 3954.269621 3880.251613 4199.666864 3892.188371 4502.045381 4900.27852 0.881272132 0.833140683 0.963875093 0.860828388 0.806947933 0.791843075 0.857026156 0.79427901 0.91873255 1 12.25864804 -13.52287875 0.094239363 1.535402257 0.717698742 0.50779322 0.047394942 53.20638125 0.377469194 5.645917041 0.433424778 3.00E-14 13.52287875 -0.817703515 SGEISLPIKEEPS(ph)PISK ddPTM_HeLa_CUDC101_4h_R1 2 SGEISLPIKEEPSPISK 17 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5;I3L2A0 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 0 SGEISLPIKEEPS(0.958)PIS(0.042)K;SGEISLPIKEEPS(0.737)PIS(0.262)K ; 79.467 0.0075095 122595000 5541.3 4732.8 4574.7 4555.69 5303.2 4717 4547.35 3639.91 6057.5 5543 TRUE FALSE FALSE 4891.757214 4878.611958 4822.02212 4741.49073 4911.993501 4627.031084 4722.742813 4054.262641 5807.807286 5510.029989 0.887791396 0.8854057 0.875135367 0.86051995 0.891464023 0.839746987 0.857117443 0.735796838 1.054042772 1 12.42784446 -13.52287875 0.034003667 1.853060827 0.310328784 0.813798338 0.035451342 261.7838656 0.713246209 25.9572027 9.961458064 3.00E-14 13.52287875 -1.542732043 DELTES(ph)PKYIQK ddPTM_HeLa_CUDC101_4h_R1 2 DELTESPKYIQK 12 1 Q8NC51-2;Q8NC51 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 DELT(0.397)ES(0.602)PKY(0.001)IQK;DELT(0.359)ES(0.64)PKY(0.001)IQK ; 85.163 0.015621 160746000 12804.4 11771 12443.9 12936.5 13708.3 12129 11252.2 7854 11810.1 14969.9 TRUE FALSE FALSE 11303.48764 12133.65056 13116.65487 13464.10639 12697.06602 11897.65953 11686.20112 8748.067613 11323.28268 14880.85837 0.759599168 0.815386469 0.881444776 0.904793665 0.853248227 0.799527772 0.785317677 0.587873858 0.760929403 1 13.86117013 -13.52287875 0.263954331 2.386970533 0.780404282 0 0.111079102 32.85261739 0.439420244 23.89484921 0.045852329 3.00E-14 13.52287875 -1.606566251 NSSSPVS(ph)PASVPGQR ddPTM_HeLa_CUDC101_4h_R1 2 NSSSPVSPASVPGQR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 NS(0.127)S(0.063)S(0.221)PVS(0.588)PAS(0.001)VPGQR;NSS(0.004)S(0.056)PVS(0.934)PAS(0.007)VPGQR ; 127.2 0.00075277 39557000 3896 3641 3506.1 3665.9 3757 3324.2 3356.6 3064.5 3693 4323.4 TRUE FALSE FALSE 3439.316786 3753.174894 3695.650371 3815.411247 3479.853595 3260.796423 3486.065186 3413.350293 3540.772977 4297.684225 0.800272102 0.87330169 0.859916685 0.887783059 0.809704346 0.758733367 0.811149681 0.794230128 0.823879278 1 12.06934377 -13.52287875 0.248113856 2.131628779 0.802246137 0 0.067251097 17.17446422 0.226513504 9.504073484 0.024571272 3.00E-14 13.52287875 -1.329382642 SQASDDS(ph)SLGK ddPTM_HeLa_CUDC101_4h_R1 1 SQASDDSSLGK 11 0 O75140;A0A2R8Y7U0;A0A2R8YEW8;A0A2R8Y721;A0A2R8Y5T1;A0A2R8Y6V4;A0A2R8Y842;A0A2R8Y6H3;A0A2R8Y5K9;H0Y770;O75140-9;O75140-4;O75140-8;O75140-1;O75140-5;O75140-6;A0A5F9UWT1;A0A2R8YF97;A0A2R8Y5P2;A0A2R8YF50;A0A2R8Y6H8;A0A2R8Y7U6;A0A2R8Y5E9;O75140-2 O75140 DEPDC5 DEP domain-containing protein 5 1 0 SQASDDS(0.5)S(0.5)LGK 158.11 0.00015595 8071900 3550.5 1710.8 3345.6 3637 3055.7 2711.1 3057 1894.4 3284.3 3732 TRUE FALSE FALSE 3134.315772 1763.50772 3526.473256 3785.33258 2830.287099 2659.390285 3174.909514 2110.050839 3148.919764 3709.801898 0.844874163 0.475364391 0.950582633 1.020359762 0.762921357 0.716855066 0.855816456 0.568777228 0.848810759 1 11.85712643 -13.52287875 0.125628107 1.781477711 0.676007955 0.084651221 0.161711064 93.45585152 0.839417178 18.15185063 0.64244903 3.00E-14 13.52287875 -1.105469756 TQPDGTSVPGEPAS(ph)PISQR ddPTM_HeLa_CUDC101_4h_R1 6 TQPDGTSVPGEPASPISQR 19 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 TQPDGTSVPGEPAS(0.992)PIS(0.008)QR;TQPDGTSVPGEPAS(0.998)PIS(0.002)QR;TQPDGTSVPGEPAS(0.992)PIS(0.008)QR;TQPDGTSVPGEPAS(0.998)PIS(0.002)QR;TQPDGTSVPGEPAS(1)PISQR;TQPDGT(0.004)S(0.003)VPGEPAS(0.993)PISQR ;;;;; 294.28 1.76E-123 2377329000 15594.6 12579 12820.99 13965.6 14027.7 13415.62 11911.49 11917.98 14162.7 15254.3 TRUE FALSE FALSE 13766.62463 12966.54408 13514.1315 14535.17753 12992.90452 13159.7394 12370.92016 13274.67467 13578.90751 15163.56675 0.907875097 0.855111749 0.891223795 0.958559274 0.856850155 0.867852506 0.815831814 0.875432205 0.895495614 1 13.88832152 -13.52287875 0.114079832 1.434984505 0.803645464 0.146492823 0.046755279 40.06074449 0.333454869 3.993915645 0.186943153 3.00E-14 13.52287875 -0.631339041 ES(ph)HSPFGLDSFNSTAK ddPTM_HeLa_CUDC101_4h_R1 1 ESHSPFGLDSFNSTAK 16 0 Q7LBC6;Q7LBC6-2;Q7LBC6-3 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 0 ES(0.499)HS(0.499)PFGLDS(0.001)FNSTAK 72.634 0.018037 7292400 2349.1 1895.7 1877.2 1923.6 2159.6 2167 1751 1579.2 2330.7 2331.4 TRUE FALSE FALSE 2073.742059 1954.10427 1978.68711 2002.052723 2000.290611 2125.668085 1818.536657 1758.969745 2234.62756 2317.532729 0.894805943 0.843183031 0.853790363 0.86387247 0.86311213 0.917211679 0.784686505 0.758983777 0.964226969 1 11.178374 -13.52287875 0.070514993 1.578902712 0.641269774 0.704059572 0.038119278 82.60241705 0.45220655 7.770156379 1.104033362 3.00E-14 13.52287875 -0.937632938 HSS(ph)IS(ph)PSTLTLK ddPTM_HeLa_CUDC101_4h_R1 1 HSSISPSTLTLK 12 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 2 0 HS(0.398)S(0.604)IS(0.685)PS(0.297)T(0.015)LT(0.001)LK 126.32 0.02215 32741000 5763.3 4664.7 4778.9 4772.1 5778.5 5111.8 4834.6 4738.3 5278.2 4789.6 TRUE FALSE FALSE 5087.734711 4808.413878 5037.261789 4966.726865 5352.231567 5014.300932 5021.072141 5277.688919 5060.630362 4761.111246 1.068602359 1.009935208 1.058001279 1.043186476 1.124155957 1.053178696 1.054600887 1.108499391 1.062909497 1 12.21708262 -13.52287875 0.145309902 0.762429846 1.09108056 0.119493326 0.033820875 47.86143597 0.478703237 3.275844162 0.073020513 3.00E-14 13.52287875 0.328650714 KKPAPLPPSS(ph)SPGPPSQDSR ddPTM_HeLa_CUDC101_4h_R1 1 KKPAPLPPSSSPGPPSQDSR 20 2 Q8N3F8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 KKPAPLPPS(0.108)S(0.446)S(0.446)PGPPSQDSR 61.684 0.0091639 32061000 3932.8 3430.1 3788.3 3990.1 4041.5 4139 3081.8 2538.2 4171.8 4571.9 TRUE FALSE FALSE 3471.803146 3535.777315 3993.106957 4152.833525 3743.366597 4060.055471 3200.666058 2827.138428 3999.836638 4544.706135 0.763922472 0.777999107 0.878628197 0.913773828 0.82367627 0.893359295 0.70426249 0.622072879 0.880108971 1 12.1499713 -13.52287875 0.267204085 2.433263314 0.780298832 0.233808554 0.09213127 34.23799983 0.458947298 26.05118681 0.047068647 3.00E-14 13.52287875 -1.652964482 LESESTS(ph)PSLEMK ddPTM_HeLa_CUDC101_4h_R1 1 LESESTSPSLEMK 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 LESES(0.001)T(0.225)S(0.771)PS(0.003)LEMK 177.93 1.33E-07 18018000 4421 4006.6 3815.2 3521.4 3970.7 3993 3751.8 3195.2 4799 4463.4 TRUE FALSE FALSE 3902.777082 4130.038597 4021.461252 3665.017913 3677.789372 3916.840178 3896.508183 3558.928653 4601.183189 4436.851498 0.879627611 0.930848959 0.906377248 0.826040248 0.828918744 0.882797222 0.878214694 0.802129315 1.037037906 1 12.11532055 -13.52287875 0.14300453 1.498041656 0.813860719 0.788406937 0.032843623 26.65088114 0.263554927 3.725275238 0.087580888 3.00E-14 13.52287875 -0.684180937 S(ph)PQESTGDPGNSSSVSEGK ddPTM_HeLa_CUDC101_4h_R1 1 SPQESTGDPGNSSSVSEGK 19 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 S(0.998)PQEST(0.001)GDPGNSSSVSEGK 142.84 5.64E-05 8579800 1420.6 1307.7 1112 1128.8 1083.5 1150.9 944.2 878.03 1686.3 1780.5 TRUE FALSE FALSE 1254.079421 1347.988687 1172.118084 1174.837343 1003.572364 1128.9485 980.6181103 977.9813861 1616.79 1769.909507 0.708555673 0.761614468 0.662247465 0.663783848 0.567019025 0.637856622 0.554049858 0.552560107 0.913487381 1 10.78945988 -13.52287875 0.113378942 2.290017665 0.410462856 0.915616546 0.04176613 12.54248625 0.103881816 3.69800305 0.176088926 3.00E-14 13.52287875 -1.87955481 SYLEGS(ph)S(ph)DNQLKDSESTPVDDR ddPTM_HeLa_CUDC101_4h_R1 1 SYLEGSSDNQLKDSESTPVDDR 22 1 Q9UHI6;E9PJ60 Q9UHI6 DDX20 Probable ATP-dependent RNA helicase DDX20 2 0 S(0.014)Y(0.012)LEGS(0.97)S(0.956)DNQLKDS(0.039)ES(0.005)T(0.005)PVDDR 57.798 0.019183 7492800 2803.9 2622.4 2243.9 2430.2 2752.8 2523.3 2320.6 1954.8 3066.2 2990.5 TRUE FALSE FALSE 2475.231092 2703.193036 2365.212021 2529.31406 2549.731428 2475.172257 2410.106319 2177.32653 2939.809938 2972.712373 0.832650718 0.909335548 0.795641059 0.850843857 0.857712119 0.832630926 0.810743192 0.732437672 0.988931847 1 11.53756417 -13.52287875 0.16887825 1.702906008 0.780086264 0.781543003 0.037119443 20.35355982 0.224893293 4.709104961 0.061712746 3.00E-14 13.52287875 -0.922819744 T(ph)SGETTQTHTEPTGDSK ddPTM_HeLa_CUDC101_4h_R1 2 TSGETTQTHTEPTGDSK 17 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 T(0.475)S(0.475)GET(0.025)T(0.025)QTHTEPTGDSK;T(0.763)S(0.215)GET(0.011)T(0.011)QTHTEPTGDSK ; 136.81 0.00031265 30233000 7449.2 5488.8 6215.6 5449.4 5614.4 5282.7 5056.1 2450.9 6975.1 10241.3 TRUE FALSE FALSE 6576.016068 5657.903422 6551.634137 5671.650086 5200.236897 5181.941299 5251.115471 2729.900549 6687.583426 10180.38429 0.645949689 0.555765211 0.643554698 0.55711552 0.510809489 0.509012347 0.515807195 0.268152996 0.656908741 1 13.3135044 -13.52287875 0.093002475 2.673787365 0.114626915 0.498375929 0.12320622 24.92540611 0.174823168 8.172533477 0.647435759 3.00E-14 13.52287875 -2.559160449 VDLTLLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 VDLTLLSPK 9 0 E7EVA0;P27816-4;B5MEG9 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 VDLT(0.001)LLS(0.999)PK 91.858 0.026054 96804000 4998.9 5344.5 4492.4 4160.8 5111.6 4941.1 4362.2 3708.8 4703.1 5962.7 TRUE FALSE FALSE 4412.93652 5509.15771 4735.272733 4330.495409 4734.527452 4846.85675 4530.451515 4130.994801 4509.236227 5927.233595 0.744518745 0.929465259 0.798900981 0.730609877 0.798775242 0.817726629 0.764345026 0.696951577 0.760765736 1 12.5331432 -13.52287875 0.269821858 2.582705607 0.763432166 0 0.096614678 20.96800167 0.281513522 17.79362908 0.030633642 3.00E-14 13.52287875 -1.819273441 QSSSSAGDS(ph)DGEREDSAAER ddPTM_HeLa_CUDC101_4h_R1 1 QSSSSAGDSDGEREDSAAER 20 1 I3L3Z2;Q9BRA0 I3L3Z2 NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary subunit" 1 0 QSSSS(0.006)AGDS(0.982)DGEREDS(0.012)AAER 91.202 0.00098866 6385200 933.89 657.98 956.5 931.98 922.53 836.43 461.01 515.35 911.08 1383.1 TRUE FALSE FALSE 824.4208299 678.2515839 1008.211283 969.9901728 854.4767998 820.4764913 478.7913101 574.0153609 873.5248968 1374.87326 0.599634057 0.493319351 0.733312163 0.705512429 0.621494959 0.596765182 0.348243961 0.4175042 0.635349397 1 10.42508292 -13.52287875 0.145957275 2.616372296 0.400501914 0.226616514 0.151406171 28.2873759 0.283812333 13.12391518 0.288209781 3.00E-14 13.52287875 -2.215870382 TIAPALVS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 TIAPALVSK 9 0 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 1 0 TIAPALVS(1)K 102.05 0.015823 41976000 2851.2 2104 2696 2291.1 3296 2370.9 1955.8 1916.2 2357.6 3224.2 TRUE FALSE FALSE 2516.986658 2168.821746 2841.753915 2384.540961 3052.860647 2325.679033 2031.235861 2134.332462 2260.41873 3205.022315 0.785325783 0.676694741 0.886656515 0.74400136 0.952523991 0.725635832 0.633766527 0.665933729 0.705273944 1 11.64611869 -13.52287875 0.141210376 1.877348244 0.66382384 0 0.128271558 43.89657391 0.430195562 10.72054552 0.262747938 3.00E-14 13.52287875 -1.213524405 TSVS(ph)PAPDKTK ddPTM_HeLa_CUDC101_4h_R1 1 TSVSPAPDKTK 11 1 O75362 O75362 ZNF217 Zinc finger protein 217 1 0 T(0.001)S(0.002)VS(0.998)PAPDKTK 111.31 0.0015285 0 1923.2 1661.5 2143 1751.9 2240.8 1761.9 1771.7 1251.6 1649.1 2097 TRUE FALSE FALSE 1697.765411 1712.688846 2258.857062 1823.350054 2075.500648 1728.294693 1840.035062 1394.077085 1581.1234 2084.526951 0.814460763 0.82161991 1.083630539 0.874706875 0.995669856 0.829106427 0.882711093 0.668773836 0.758504657 1 11.02550431 -13.52287875 0.016841018 2.03309795 2.93E-13 0 0.118997846 5755.441304 7.824562077 598.4352304 371.6222349 3.00E-14 13.52287875 -2.03309795 VRSS(ph)PSGNTQSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 VRSSPSGNTQSSPK 14 1 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 2 0 VRS(0.007)S(0.987)PS(0.007)GNT(0.02)QS(0.312)S(0.669)PK;VRS(0.233)S(0.513)PS(0.222)GNT(0.031)QS(0.033)S(0.967)PK ; 142.4 0.0056009 5642600 3994.4 2905.5 4581.1 4328.4 3799.4 3155.8 3482.6 2534.4 4713.7 5010 TRUE FALSE FALSE 3526.182487 2995.015011 4828.768123 4504.930861 3519.125831 3095.608373 3616.925049 2822.905852 4519.399291 4980.200297 0.708040295 0.601384449 0.969593156 0.904568209 0.706623353 0.621583107 0.72626096 0.566825767 0.907473399 1 12.28198805 -13.52287875 0.213065764 2.39479486 0.681848603 0.364351857 0.121237513 36.8148193 0.460158535 21.39164035 0.110153687 3.00E-14 13.52287875 -1.712946257 S(ph)GITSPVEK ddPTM_HeLa_CUDC101_4h_R1 2 SGITSPVEK 9 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 S(0.762)GIT(0.022)S(0.215)PVEK;S(0.811)GIT(0.115)S(0.075)PVEK ; 102.06 0.01581 32296000 11155.5 9393.4 9512.5 9799.2 8524.4 8631.4 7770.7 6417.4 9961.5 14145 TRUE FALSE FALSE 9847.869201 9682.79952 10026.77452 10198.85373 7895.571995 8466.770426 8070.418502 7147.930876 9550.882754 14060.86491 0.700374356 0.688634702 0.713097991 0.725336158 0.561528188 0.602151466 0.573963163 0.508356415 0.679252863 1 13.77939772 -13.52287875 0.109600135 2.281528666 0.392356205 0.307742964 0.10739781 17.98278533 0.144884428 5.139625748 0.268569291 3.00E-14 13.52287875 -1.88917246 T(ph)SPPLLDR ddPTM_HeLa_CUDC101_4h_R1 4 TSPPLLDR 8 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.994)S(0.006)PPLLDR;T(0.999)S(0.001)PPLLDR;T(0.992)S(0.008)PPLLDR;T(0.999)S(0.001)PPLLDR ;;; 174.86 4.80E-05 11324000000 17044 16076.6 13997.8 14353.6 15147.3 16012.6 13295.1 13534.2 17011.8 17521.4 TRUE FALSE FALSE 15046.12816 16571.90099 14754.56341 14939.00185 14029.91386 15707.18633 13807.89646 15074.87862 16310.5664 17417.18193 0.863866969 0.951468559 0.847126904 0.857716358 0.805521462 0.901821339 0.792774429 0.865517664 0.936464146 1 14.0882236 -13.52287875 0.172972759 1.5980949 0.820556915 0.494872688 0.043998904 23.68900928 0.265596113 4.760429354 0.057023518 3.00E-14 13.52287875 -0.777537985 APKPPTDGST(ph)SPTSTPSEDQEALGK ddPTM_HeLa_CUDC101_4h_R1 1 APKPPTDGSTSPTSTPSEDQEALGK 25 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;S4R3G4;F8WBN2;F6SRV7;Q8NHM5-5 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 0 APKPPTDGS(0.02)T(0.586)S(0.391)PT(0.002)STPSEDQEALGK 117.62 2.13E-08 35537000 2898.8 2374 2658 2697.3 2473.9 2367.5 2392.3 1618.2 3047.3 3404.6 TRUE FALSE FALSE 2559.007058 2447.140126 2801.69952 2807.307553 2291.405326 2322.343882 2484.571812 1802.409347 2921.689004 3384.349288 0.756129714 0.723075521 0.827839943 0.829496992 0.677059349 0.686201005 0.734135753 0.532571905 0.863294168 1 11.72466276 -13.52287875 0.106592238 1.9401798 0.533127855 0.602107251 0.075618041 40.23145717 0.316785963 8.317182643 0.468203482 3.00E-14 13.52287875 -1.407051945 LSYLS(ph)APGSEYSMYSTDSR ddPTM_HeLa_CUDC101_4h_R1 1 LSYLSAPGSEYSMYSTDSR 19 0 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 LSYLS(0.888)APGS(0.091)EYS(0.016)MYS(0.001)T(0.001)DS(0.002)R 88.385 0.0015344 0 487.18 508.74 425.99 362.52 454.96 372.93 326.25 248.97 368.88 658.06 TRUE FALSE FALSE 430.0734989 524.4136764 449.0203079 377.3051325 421.3985072 365.8169816 338.8335718 277.3117384 353.6746103 654.1458299 0.657458137 0.801677015 0.686422335 0.576790549 0.644196581 0.559228485 0.517978647 0.423929536 0.540666307 1 9.353468484 -13.52287875 0.077489375 2.406810651 0.142267315 0.074465492 0.149093155 44.50897308 0.265559186 10.93529063 1.293077081 3.00E-14 13.52287875 -2.264543336 ITQVSAPPAGSMT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 ITQVSAPPAGSMTPK 15 0 H0Y6R1;Q9UBP9-3;Q9UBP9-4;Q9UBP9 H0Y6R1 GULP1 PTB domain-containing engulfment adapter protein 1 1 0 ITQVSAPPAGS(0.046)MT(0.954)PK;ITQVSAPPAGS(0.072)MT(0.928)PK ; 137.17 0.00011552 10612000 4076.5 3663.9 3673.4 3474.7 3764 3591.7 3674.7 3853 3604.1 3194.4 TRUE FALSE FALSE 3598.65885 3776.780416 3871.995115 3616.413285 3486.337219 3523.194307 3816.43441 4291.609946 3455.537473 3175.399567 1.133293236 1.189387457 1.219372565 1.13888448 1.097920796 1.109527867 1.201875332 1.351518086 1.088221309 1 11.63272243 -13.52287875 0.093264297 0.389348897 1.326452501 0.414608533 0.068708313 78.55792913 0.552336814 9.457438 0.74425071 3.00E-14 13.52287875 0.937103604 CSK(ac)LPSSTK(ac)SGWPR ddPTM_HeLa_CUDC101_4h_R1 2 CSKLPSSTKSGWPR 14 2 B5MBX1;A0A0C4DFT8;G3XAA4;Q9NQC1-3;Q9NQC1-2;Q9NQC1;D6R9B8;C9J929 B5MBX1 JADE2 Protein Jade-2 0 2 ; CSK(1)LPSSTK(1)SGWPR;CSK(1)LPSSTK(1)SGWPR 257.2 2.01E-56 78212000 2470.41 2095.25 2384.19 2774.2 2851.5 2693.7 2747.19 3324.1 1494.55 1103.9 FALSE TRUE FALSE 2180.832285 2159.802169 2513.086523 2887.343867 2641.150526 2642.322161 2853.150039 3702.502108 1432.944016 1097.333954 1.987391602 1.968226866 2.290174759 2.631235329 2.406879435 2.407947145 2.600074507 3.374088713 1.305841318 1 10.09978694 -7.543148138 0.141283248 1.16E-11 3.850313451 0.886592937 0.217126216 1.063036497 0.132088402 1.711322146 1.552449901 2.86E-08 7.543148138 3.850313451 SSQPLASK(ac)QEK ddPTM_HeLa_CUDC101_4h_R1 2 SSQPLASKQEK 11 1 P17096;P17096-2;P17096-3;A0A669KAX1 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 0 1 ; SSQPLASK(1)QEK;SSQPLASK(1)QEK 163.45 0.00021279 422550000 13246.4 12638 13261.4 15793.8 15834.2 16113.2 16519.1 15288.4 7955.6 7523.1 FALSE TRUE FALSE 11693.67707 13027.3618 13978.3514 16437.93943 14666.14261 15805.86756 17156.24722 17028.76966 7627.666801 7478.352267 1.563670265 1.742009648 1.869175307 2.198069688 1.961146264 2.113549482 2.2941213 2.27707509 1.019966234 1 12.86850472 -7.446467471 0.285521564 0.839694107 2.439601778 0.966664623 0.083004542 0.187839459 0.05334278 0.110187623 0.105552552 3.58E-08 7.446467471 1.599907671 MVIQLRPGRS(ph)PEPDGPAPAFLR ddPTM_HeLa_CUDC101_4h_R1 1 MVIQLRPGRSPEPDGPAPAFLR 22 2 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 MVIQLRPGRS(1)PEPDGPAPAFLR 41.689 0.03733 18921000 872.52 710.96 695.49 852.22 900.92 622.55 598.59 716.53 900.37 962.92 TRUE FALSE FALSE 770.2445283 732.8638349 733.0902931 886.9772152 834.4609265 610.675896 621.6778168 798.0968789 863.2563675 957.192509 0.804691346 0.765638916 0.765875502 0.926644543 0.871779625 0.637986497 0.649480445 0.833789307 0.901862853 1 9.902665296 -13.52287875 0.156390493 1.870866198 0.706752175 0.355542352 0.088485325 39.59937376 0.416511773 10.49975975 0.181781001 3.00E-14 13.52287875 -1.164114024 ATDSDLSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 ATDSDLSSPR 10 0 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 1 0 ATDSDLS(0.07)S(0.93)PR;ATDSDLS(0.07)S(0.93)PR ; 163.9 3.54E-05 119301000 14136.7 12914.9 12413.3 12729.6 13586.6 13281.6 12163.8 9812.8 14462.6 15125.2 TRUE FALSE FALSE 12479.61746 13312.79276 13084.40055 13248.76811 12584.34359 13028.27561 12632.96184 10929.84949 13866.44551 15035.23464 0.830024789 0.885439641 0.870249175 0.881181334 0.836990169 0.866516281 0.840223791 0.726949047 0.922263326 1 13.87605976 -13.52287875 0.216661637 1.820540266 0.818094073 0.502383709 0.046730295 20.68630377 0.260405135 7.192999251 0.034442543 3.00E-14 13.52287875 -1.002446193 ETSHGS(ph)PTVTK ddPTM_HeLa_CUDC101_4h_R1 2 ETSHGSPTVTK 11 0 Q8NI08-2;Q8NI08;Q8NI08-7 Q8NI08-2 NCOA7 Nuclear receptor coactivator 7 1 0 ET(0.034)S(0.042)HGS(0.914)PT(0.01)VTK;ET(0.001)S(0.001)HGS(0.988)PT(0.01)VTK ; 75.462 0.031386 14622300 11593.9 3714.8 12376.6 12637.8 7162.2 6548.3 8108.5 2801.5 12839.4 16145.1 TRUE FALSE FALSE 10234.88062 3829.248585 13045.71643 13153.22411 6633.858775 6423.402088 8421.247561 3120.411436 12310.1545 16049.06823 0.637724289 0.238596318 0.812864414 0.8195631 0.413348531 0.400235203 0.524718784 0.194429445 0.767032349 1 13.97020192 -13.52287875 0.083192399 2.748779757 1.04E-12 0.403982935 0.197536052 94.12659301 0.598571612 29.87761674 3.045295651 3.00E-14 13.52287875 -2.748779757 EKEQS(ph)PTAEKDEDEENDASLANSSTTTLEDK ddPTM_HeLa_CUDC101_4h_R1 1 EKEQSPTAEKDEDEENDASLANSSTTTLEDK 31 2 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 EKEQS(0.794)PT(0.102)AEKDEDEENDAS(0.089)LANS(0.002)S(0.004)T(0.003)T(0.004)T(0.001)LEDK 42.367 0.019722 21488000 2793.6 2649.9 2249.6 2516.1 2354.6 2170.7 1964.1 2250 2833.5 3382.6 TRUE FALSE FALSE 2466.138443 2731.540278 2371.220181 2618.717434 2180.905849 2129.297514 2039.855995 2506.130905 2716.701931 3362.480145 0.733428403 0.812358783 0.705199757 0.778805322 0.648600365 0.633252071 0.606652205 0.745322142 0.807945865 1 11.71531003 -13.52287875 0.157864077 2.181512283 0.607524096 0.444004093 0.080743866 17.07214795 0.180685127 6.191842816 0.103697412 3.00E-14 13.52287875 -1.573988187 EVEDKES(ph)EGEEEDEDEDLSK ddPTM_HeLa_CUDC101_4h_R1 14 EVEDKESEGEEEDEDEDLSK 20 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(0.982)EGEEEDEDEDLS(0.018)K;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(0.998)EGEEEDEDEDLS(0.002)K;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK ;;;;;;;;;;;;; 99.064 0.00048758 5622399300 39805.61 37811.3 33649.11 34134.3 36186.5 35607.34 32617.9 32871.18 38608.8 40294.5 TRUE FALSE FALSE 35139.65674 38976.22134 35468.28267 35526.4443 33517.09399 34928.18932 33875.98333 36613.10226 37017.32892 40054.82652 0.877288951 0.97307178 0.885493354 0.886945404 0.836780406 0.872009502 0.845740358 0.914074668 0.924166502 1 15.28968847 -13.52287875 0.203213036 1.572015995 0.861350503 0.299785711 0.041603018 23.71270675 0.290086035 5.368553851 0.033821161 3.00E-14 13.52287875 -0.710665493 KAS(ph)PEAASTPR ddPTM_HeLa_CUDC101_4h_R1 2 KASPEAASTPR 11 1 P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-4;H3BVD2;H3BT29;P29590-14;P29590-10;P29590-11;P29590-12;P29590-13;H3BT57;H3BUJ5;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 1 0 KAS(0.983)PEAAS(0.011)T(0.007)PR;KAS(0.737)PEAAS(0.263)TPR ; 115.12 0.011298 34501000 5567.9 3776.16 5557 5777.9 4334.65 4295.9 4127.2 2751.49 5052.65 7743.6 TRUE FALSE FALSE 4915.239202 3892.499014 5857.428229 6013.547736 4014.891505 4213.962865 4286.387487 3064.7085 4844.377628 7697.540723 0.638546697 0.50568086 0.760948001 0.78122974 0.521581067 0.54744275 0.55685155 0.398141252 0.629340955 1 12.91018188 -13.52287875 0.143828117 2.521537521 0.432987671 0.144692322 0.151955809 27.9300532 0.277335145 11.99987603 0.27679176 3.00E-14 13.52287875 -2.08854985 ANQISPS(ph)NSSLK ddPTM_HeLa_CUDC101_4h_R1 2 ANQISPSNSSLK 12 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 ANQIS(0.01)PS(0.969)NS(0.017)S(0.005)LK;ANQIS(0.212)PS(0.786)NS(0.002)SLK ; 137.93 0.0013138 32683000 4164.3 3822.9 3412.3 3167.7 3703.8 3445.5 2886.3 2528.4 4246.7 4951.9 TRUE FALSE FALSE 3676.167067 3940.679018 3596.77926 3296.892498 3430.578053 3379.782828 2997.625558 2816.222836 4071.649229 4922.445879 0.746817163 0.800553041 0.730689448 0.66976714 0.6969255 0.686606397 0.60897075 0.572118598 0.827159776 1 12.26515963 -13.52287875 0.095505093 2.092503292 0.425452697 0.729204152 0.060153758 19.96976054 0.143311566 4.376772057 0.325376465 3.00E-14 13.52287875 -1.667050594 IFVGGLS(ph)PDTPEEK ddPTM_HeLa_CUDC101_4h_R1 3 IFVGGLSPDTPEEK 14 0 Q14103-3;Q14103;H0YA96;D6RAF8;Q14103-4;H0Y8G5;Q14103-2;D6RF44 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 IFVGGLS(0.951)PDT(0.049)PEEK;IFVGGLS(0.976)PDT(0.024)PEEK;IFVGGLS(0.97)PDT(0.03)PEEK ;; 164.92 2.05E-05 81184000 13005.7 11152.7 11201.8 11378.1 12122.2 11070.3 10510 9950.4 13054.8 13376.9 TRUE FALSE FALSE 11481.19156 11496.30147 11807.40319 11842.1481 11227.96946 10859.15247 10915.37422 11083.11332 12516.67562 13297.3336 0.863420585 0.864556896 0.887952694 0.890565616 0.844377511 0.81664135 0.820869397 0.833483888 0.941292141 1 13.69884936 -13.52287875 0.165552619 1.604621782 0.808861615 0.76715799 0.026276218 13.57719038 0.14816961 2.641716836 0.037260367 3.00E-14 13.52287875 -0.795760166 PCSEETPAISPSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 PCSEETPAISPSKR 14 1 P33316-2;H0YNJ9 P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 0 1 ; PCSEETPAISPSK(1)R;PCSEETPAISPSK(1)R 310.85 3.57E-121 33276000 3394.8 4573.1 5226 5690.7 5526.2 4006.5 4838.9 4719.6 1696.21 2054.18 FALSE TRUE FALSE 2996.86669 4713.991791 5508.533368 5922.791343 5118.543236 3930.082688 5025.537994 5256.860187 1626.291506 2041.961646 1.467641028 2.308560398 2.697667402 2.900539956 2.506679421 1.924660385 2.461132413 2.574416712 0.796435873 1 10.99574005 -7.341154565 1.9968656 1.177396855 2.507322688 0.848312566 0.272329483 0.093658752 0.708088119 0.053199027 0.061243403 4.56E-08 7.341154565 1.329925832 up GNSQLLLS(ph) ddPTM_HeLa_CUDC101_4h_R1 1 GNSQLLLS 8 0 P46087;P46087-4;P46087-2 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 GNSQLLLS(1) 80.229 0.019753 5912600 2566.5 2664 2057.6 2382.1 2614.5 3020 2109 693.41 2579 3309.2 TRUE FALSE FALSE 2265.658761 2746.074682 2168.84008 2479.252334 2421.633544 2962.398532 2190.344836 772.3449915 2472.692528 3289.516731 0.68875125 0.834795779 0.659318756 0.753682847 0.736166964 0.900557369 0.665856117 0.234789805 0.751688692 1 11.68365994 -13.52287875 0.048184718 2.292882875 3.77E-12 0.273766348 0.163819139 360.6534662 1.378811091 63.62341889 16.50254312 3.00E-14 13.52287875 -2.292882875 YDS(ph)DGDKS(ph)DDLVVDVSNEDPATPR ddPTM_HeLa_CUDC101_4h_R1 1 YDSDGDKSDDLVVDVSNEDPATPR 24 1 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 2 0 Y(0.157)DS(0.854)DGDKS(0.989)DDLVVDVS(0.001)NEDPATPR 59.636 0.0079621 5575200 960.04 873.54 842.74 895.29 902.17 803.29 638.48 622.55 1127.9 1241 TRUE FALSE FALSE 847.5055665 900.452732 888.3010735 931.803796 835.6187165 787.9685816 663.1063875 693.4185756 1081.407485 1233.618477 0.687007841 0.729928052 0.720077634 0.755341958 0.677372082 0.638745768 0.537529552 0.562101321 0.876614208 1 10.26868056 -13.52287875 0.135545338 2.213805828 0.512781377 0.800024525 0.058645805 19.44347356 0.18494949 6.342235307 0.177433251 3.00E-14 13.52287875 -1.701024451 ATSSSSGSLS(ph)ATGR ddPTM_HeLa_CUDC101_4h_R1 1 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 ATSSSS(0.005)GS(0.003)LS(0.684)AT(0.308)GR 108.66 0.0039004 3109700 1137.3 1128.8 872.08 1182.2 1025 858.95 920.6 794.24 1226.6 1368.6 TRUE FALSE FALSE 1003.987418 1163.57699 919.2272827 1230.415226 949.3877921 842.5669599 956.1078504 884.6530712 1176.039029 1360.459506 0.737976701 0.85528234 0.675674122 0.904411502 0.697843477 0.619325276 0.702783027 0.650260494 0.864442509 1 10.4098783 -13.52287875 0.148922735 2.018568015 0.628477485 0.500281686 0.084781912 29.12623866 0.296354197 8.685903012 0.178194943 3.00E-14 13.52287875 -1.39009053 TLDS(ph)DEERPR ddPTM_HeLa_CUDC101_4h_R1 1 TLDSDEERPR 10 1 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 T(0.003)LDS(0.997)DEERPR 82.505 0.022348 36847000 3272.7 2755.2 2757.5 2845.7 2724.7 2689.9 2341.3 2205.7 3229.2 3689.5 TRUE FALSE FALSE 2889.079067 2840.084446 2906.578791 2961.759946 2523.704309 2638.594639 2431.604725 2456.787972 3096.091009 3667.55469 0.787739873 0.774380939 0.79251137 0.807557132 0.68811634 0.719442479 0.663004353 0.669870849 0.844184006 1 11.84060276 -13.52287875 0.104623056 1.920914721 0.548009732 0.656534083 0.05595881 19.36930751 0.150168605 3.832208391 0.226555708 3.00E-14 13.52287875 -1.372904989 HAALCAMEVLPLALPS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 2 HAALCAMEVLPLALPSPPR 19 0 H7BYF1;Q9ULI0-2;Q9ULI0 H7BYF1 ATAD2B ATPase family AAA domain-containing protein 2B 1 0 HAALCAMEVLPLALPS(1)PPR;HAALCAMEVLPLALPS(1)PPR ; 101.49 0.00041706 12984000 1558.04 1385.29 1384.41 1283.97 1672.45 1340.12 1152.41 1270.9 1483.08 1642.09 TRUE FALSE FALSE 1375.408913 1427.969143 1459.255392 1336.335846 1549.076695 1314.559444 1196.85884 1415.574119 1421.946815 1632.322776 0.842608419 0.874808074 0.893974779 0.818671323 0.949001459 0.805330578 0.733224371 0.867214585 0.871118651 1 10.67271065 -13.52287875 0.191717648 1.708606892 0.812487714 0.111084866 0.066553395 29.02537483 0.344874213 7.676182561 0.061474891 3.00E-14 13.52287875 -0.896119178 QNEVANVQPSSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 QNEVANVQPSSKR 13 1 Q6ZW49-2;Q6ZW49-1;Q6ZW49 Q6ZW49-2 PAXIP1 PAX-interacting protein 1 0 1 ; QNEVANVQPSSK(1)R;QNEVANVQPSSK(1)R 241.84 1.13E-31 5277200 1861.09 2475.5 2811.2 2737.79 2686.3 2573.8 2281.2 3051.3 1102.16 1183.38 FALSE TRUE FALSE 1642.935851 2551.767221 2963.181975 2849.44891 2488.137001 2524.709053 2369.186648 3398.647658 1056.728498 1176.341203 1.396649073 2.169240705 2.51898171 2.422297971 2.115149069 2.146238733 2.014030149 2.889168253 0.898318018 1 10.20009087 -7.335794158 2.088760045 1.152016183 2.32767273 0.83299338 0.253932714 0.091616436 0.756757198 0.046779188 0.053959895 4.62E-08 7.335794158 1.175656548 up TESS(ph)TEGKEQEEK ddPTM_HeLa_CUDC101_4h_R1 1 TESSTEGKEQEEK 13 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 T(0.035)ES(0.065)S(0.757)T(0.143)EGKEQEEK 65.038 0.036487 13038000 1974.8 642.87 2335.6 2347.2 1261.5 1141.6 1393.5 459.75 2344.4 3336.9 TRUE FALSE FALSE 1743.316938 662.6760627 2461.869601 2442.928961 1168.441658 1119.825882 1447.247762 512.0860816 2247.76284 3317.05197 0.525562142 0.199778619 0.74218602 0.736475938 0.352253045 0.337596725 0.436305423 0.154379879 0.677638716 1 11.6956859 -13.52287875 0.139822854 3.062969998 0.213520698 0.377436207 0.202089683 36.89107246 0.35897457 20.90878816 0.529260525 3.00E-14 13.52287875 -2.8494493 TRPWLQELSMGS(ph)PGPVTNK ddPTM_HeLa_CUDC101_4h_R1 2 TRPWLQELSMGSPGPVTNK 19 1 A0A1B0GV70;Q96N21-2;Q96N21 A0A1B0GV70 ENTHD2 AP-4 complex accessory subunit tepsin 1 0 TRPWLQELSMGS(0.711)PGPVT(0.289)NK;TRPWLQELSMGS(0.999)PGPVT(0.001)NK ; 118.22 3.54E-05 60149000 3212.8 2981.4 2466.78 2726.1 2969.9 3010.2 2592.9 1957.16 2919.1 3666.6 TRUE FALSE FALSE 2836.200454 3073.2534 2600.141588 2837.282141 2750.816394 2952.78545 2692.909022 2179.955183 2798.773462 3644.7909 0.77815176 0.843190593 0.713385667 0.778448536 0.754725434 0.810138505 0.738837726 0.598101576 0.767883135 1 11.83162033 -13.52287875 0.152302844 1.94863059 0.668918144 0.122984606 0.090448886 22.03116852 0.227638995 6.21601965 0.118058797 3.00E-14 13.52287875 -1.279712446 KMEES(ph)DEEAVQAK ddPTM_HeLa_CUDC101_4h_R1 4 KMEESDEEAVQAK 13 1 I3VM54;Q9Y2K7-3;Q9Y2K7;Q9Y2K7-4;Q9Y2K7-5;Q9Y2K7-2 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 KMEES(1)DEEAVQAK;KMEES(1)DEEAVQAK;KMEES(1)DEEAVQAK;KMEES(1)DEEAVQAK ;;; 193.54 5.15E-16 77340000 11340 8826.9 9613.6 9346.2 11132 9656.2 9715.5 9817.8 8331.3 8562.4 TRUE FALSE FALSE 10010.74239 9098.846327 10133.3403 9727.378434 10310.81454 9472.024073 10090.23009 10935.41867 7987.880288 8511.470464 1.176147228 1.069009916 1.190551073 1.142855218 1.211402258 1.112854014 1.185486119 1.284786068 0.938484169 1 13.05519268 -13.52287875 0.180357913 0.264676535 1.213291698 0.707066163 0.053361273 25.39709154 0.291817118 6.568859336 0.067029593 3.00E-14 13.52287875 0.948615162 QALYLMFDTSQES(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 QALYLMFDTSQESPVK 16 0 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 QALYLMFDT(0.027)S(0.143)QES(0.83)PVK;QALYLMFDTSQES(1)PVK ; 147.09 0.00022614 19529600 2725.5 2346.2 2553.1 2098.01 2643.6 2305.82 2158.2 2198.45 2526 2824.6 TRUE FALSE FALSE 2406.021022 2418.483641 2691.128309 2183.575916 2448.586895 2261.840325 2241.442497 2448.712662 2421.877211 2807.799154 0.856906385 0.861344957 0.958447582 0.777682376 0.872066256 0.80555631 0.798291606 0.872111048 0.86255358 1 11.45522403 -13.52287875 0.176384227 1.654674319 0.809423715 0.056834578 0.063482204 25.58972046 0.290257121 5.73128734 0.063734381 3.00E-14 13.52287875 -0.845250604 (ac)SALEK(ac)SMHLGR ddPTM_HeLa_CUDC101_4h_R1 1 SALEKSMHLGR 11 1 Q9Y570-4;Q9Y570 Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 0 1 SALEK(1)SMHLGR 52.79 0.0067736 411930 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)PPPESVDTPTSTK ddPTM_HeLa_CUDC101_4h_R1 2 SPPPESVDTPTSTK 14 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 S(1)PPPESVDTPTSTK;S(1)PPPESVDTPTSTK ; 129.77 0.00087201 11038300 3195 2616.32 3853.1 3024 2477.5 2539.7 2031.89 1969.3 3796.6 4388.1 TRUE FALSE FALSE 2820.486943 2696.925718 4061.410241 3147.331791 2294.739761 2491.259454 2110.260678 2193.477152 3640.102541 4361.999386 0.646604159 0.618277418 0.931089136 0.721534212 0.526075214 0.571127878 0.483782892 0.502860491 0.834503222 1 12.09077385 -13.52287875 0.092946359 2.266677331 0.293995129 0.583143748 0.112064176 63.8368312 0.447508214 16.12473365 1.279243089 3.00E-14 13.52287875 -1.972682202 DRAS(ph)PAAAEEVVPEWASCLK ddPTM_HeLa_CUDC101_4h_R1 4 DRASPAAAEEVVPEWASCLK 20 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 DRAS(1)PAAAEEVVPEWASCLK;DRAS(1)PAAAEEVVPEWASCLK;DRAS(1)PAAAEEVVPEWASCLK;DRAS(1)PAAAEEVVPEWASCLK ;;; 122.16 1.32E-05 328010000 18255.1 16878.9 15943.6 14750.2 17150.1 17107.6 16321.7 17447.1 17395.5 13835.3 TRUE FALSE FALSE 16115.26485 17398.9189 16805.55924 15351.77691 15884.97129 16781.30103 16951.23344 19433.20734 16678.45013 13753.00702 1.171763006 1.265099253 1.221955258 1.116248751 1.155018046 1.22019141 1.232547428 1.413015155 1.21271298 1 13.74745947 -13.52287875 0.085109444 0.2301937 1.43986067 0.149626194 0.092928422 76.18973883 0.494416154 10.86476022 1.053815037 3.00E-14 13.52287875 1.20966697 SQTTTERDS(ph)DTDVEEEELPVENR ddPTM_HeLa_CUDC101_4h_R1 1 SQTTTERDSDTDVEEEELPVENR 23 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.009)QT(0.029)T(0.017)T(0.029)ERDS(0.912)DT(0.004)DVEEEELPVENR 121.48 1.63E-07 30797000 1796.6 2094.4 1805.9 1983.6 1898.8 1498.9 1709.2 868.5 2204.9 2372.4 TRUE FALSE FALSE 1586.005271 2158.925982 1903.532417 2064.499782 1758.729307 1470.31098 1775.124417 967.3665294 2114.013089 2358.288859 0.672523752 0.91546291 0.807166776 0.875422777 0.745765007 0.623465176 0.752717128 0.41019849 0.896418215 1 11.20352472 -13.52287875 0.041910082 2.212000372 1.60E-12 0.497839175 0.115107297 444.5318522 1.485205053 69.93966634 21.55701211 3.00E-14 13.52287875 -2.212000372 VIEPPAASCPS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 VIEPPAASCPSSPR 14 0 A0A0A0MRX4;Q3MIN7;Q3MIN7-2 A0A0A0MRX4 RGL3 Ral guanine nucleotide dissociation stimulator-like 3 1 0 VIEPPAAS(0.289)CPS(0.681)S(0.029)PR 155.39 8.59E-05 15902000 3302.5 2793 2886.8 2613.2 3101.1 2831.2 2759 3012.7 3619.3 2616.9 TRUE FALSE FALSE 2915.385956 2879.049019 3042.86914 2719.777591 2872.338031 2777.199577 2865.415554 3355.65359 3470.110922 2601.334562 1.120727029 1.106758454 1.169733868 1.04553164 1.104178629 1.067605689 1.101517504 1.289973861 1.333973327 1 11.34503624 -13.52287875 0.185905008 0.461954799 1.148914287 0 0.122379755 43.53701726 0.508815063 8.480034717 0.076826516 3.00E-14 13.52287875 0.686959488 (ac)SDAAVDTSSEITTK ddPTM_HeLa_CUDC101_4h_R1 2 SDAAVDTSSEITTK 14 0 B8ZZQ6;P06454-2;P06454 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 0 ; ; 136.48 3.40E-07 32479000 6462.3 6095.7 5877.3 5395.9 6797.7 6373.1 5851.3 6565.5 6584.5 6966.5 FALSE FALSE TRUE 5704.79899 6283.501292 6195.044616 5615.968125 6296.247214 6251.543736 6076.986601 7312.889981 6313.084123 6925.062948 0.8237902 0.90735656 0.894583149 0.810962755 0.909197109 0.902741792 0.877535215 1.056003395 0.91162841 1 12.75761147 -4.255545184 24.36949049 0.902669911 1.05600349 0.480353206 0.04994731 449.4642823 1858225.622 0.009638042 0.114696601 5.55E-05 4.255545184 0.153333578 RAVS(ph)PSNPK ddPTM_HeLa_CUDC101_4h_R1 2 RAVSPSNPK 9 1 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 RAVS(0.999)PS(0.001)NPK;RAVS(0.992)PS(0.008)NPK ; 87.216 0.017381 80177000 7276.1 3607.2 8544.4 8896 6063.6 5575.5 6497.6 3238.1 7670.7 8511.1 TRUE FALSE FALSE 6423.206588 3718.333556 9006.336109 9258.817332 5616.300308 5469.156627 6748.214609 3606.712215 7354.510499 8460.475599 0.759201597 0.439494626 1.064518892 1.09436133 0.663827966 0.646436074 0.797616461 0.426301355 0.869278614 1 13.04652305 -13.52287875 0.039731319 2.237462502 2.44E-12 0.174203577 0.205043311 839.9480991 2.664417112 130.0255816 42.56430014 3.00E-14 13.52287875 -2.237462502 DLGSTEDGDGT(ph)DDFLTDKEDEK ddPTM_HeLa_CUDC101_4h_R1 4 DLGSTEDGDGTDDFLTDKEDEK 22 1 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 0 DLGS(0.015)T(0.058)EDGDGT(0.926)DDFLTDKEDEK;DLGS(0.005)T(0.016)EDGDGT(0.923)DDFLT(0.055)DKEDEK;DLGSTEDGDGT(0.999)DDFLT(0.001)DKEDEK;DLGS(0.005)T(0.015)EDGDGT(0.98)DDFLTDKEDEK ;;; 128.72 3.81E-07 321138000 15132.3 14001.7 12890.5 11744.9 13320.4 13775.8 12074.8 10482.5 14672.9 16723.5 TRUE FALSE FALSE 13358.51473 14433.07578 13587.39942 12223.90779 12337.78063 13513.04957 12540.52908 11675.78543 14068.07685 16624.02788 0.803566671 0.868205701 0.817334976 0.735315645 0.74216554 0.812862542 0.754361649 0.702343951 0.846249595 1 14.02098236 -13.52287875 0.147269315 1.84185941 0.69668219 0.456780943 0.05975845 17.47853369 0.176467046 4.236365041 0.090268666 3.00E-14 13.52287875 -1.14517722 SEDESET(ph)EDEEEKSQEDQEQKR ddPTM_HeLa_CUDC101_4h_R1 1 SEDESETEDEEEKSQEDQEQKR 22 2 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 1 0 S(0.013)EDES(0.187)ET(0.799)EDEEEKSQEDQEQKR 51.857 0.035023 13327000 931.2 908.36 781.21 844.68 940.9 901.35 758.88 690.74 862.85 1049.6 TRUE FALSE FALSE 822.0461476 936.3454949 823.4445756 879.1297014 871.4916815 884.1582505 788.1502558 769.3710495 827.2829578 1043.356933 0.787885835 0.897435447 0.789226151 0.842597269 0.835276648 0.847416855 0.755398494 0.737399662 0.792905028 1 10.02701707 -13.52287875 0.248739725 2.210061944 0.789691207 0 0.079522829 17.97865985 0.237278153 10.66638791 0.027249289 3.00E-14 13.52287875 -1.420370738 (ac)SDFDEFER ddPTM_HeLa_CUDC101_4h_R1 1 SDFDEFER 8 0 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 0 155.51 2.54E-66 41030000 304 216.83 195.53 299.04 277.52 259.83 344.26 363.39 290.93 194.45 FALSE FALSE TRUE 268.3655808 223.5102753 206.1009432 311.2361438 257.0479025 254.8741757 357.5382235 404.7568487 278.9377423 193.2934028 1.388384585 1.156326456 1.066259584 1.610174684 1.329832777 1.318587039 1.849717675 2.094002397 1.443079475 1 7.594648588 -1 0.390788341 1.157350978 15.93658881 0.684135244 0.183478859 23.99380229 0.28718285 0.046607134 274.1175529 0.1 1 14.77923784 (ac)SDKPDMAEIEK(ac)FDK ddPTM_HeLa_CUDC101_4h_R1 1 SDKPDMAEIEKFDK 14 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 SDKPDMAEIEK(1)FDK 72.531 0.00073419 744230 217.83 186.6 135.07 109.81 363.24 372.01 343.5 223.64 314.34 327.3 FALSE TRUE FALSE 192.2962976 192.3489248 142.3722928 114.2885264 336.4445089 364.9145291 356.7489101 249.0982736 301.3827722 325.353205 0.591038584 0.591200338 0.437593024 0.351275244 1.03409004 1.121595003 1.096497298 0.765624158 0.926324891 1 8.345862956 (ac)SDKPDMAEIEKFDK ddPTM_HeLa_CUDC101_4h_R1 2 SDKPDMAEIEKFDK 14 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 0 ; ; 82.515 5.94E-05 484010000 6100.9 5939.3 5738.2 5997 7789.6 5892.1 5701.7 6380.7 6120.7 5550 FALSE FALSE TRUE 5385.76175 6122.282793 6048.424449 6241.583581 7214.976727 5779.718009 5921.616479 7107.053096 5868.402155 5516.988353 0.976214087 1.109714649 1.09632721 1.131338908 1.307774508 1.047621934 1.073342211 1.288212452 1.063696673 1 12.42966522 -6.96219227 1.549724685 0.987855217 1.16111951 0.366851951 0.083032591 0.227622668 1.081264565 0.013939042 0.018697242 1.09E-07 6.96219227 0.173264293 ASAS(ph)PGENDSGTGGEEPQR ddPTM_HeLa_CUDC101_4h_R1 1 ASASPGENDSGTGGEEPQR 19 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 AS(0.072)AS(0.928)PGENDSGTGGEEPQR 174.04 1.21E-07 8779500 1720.6 1531.4 1554.7 1510.3 1584 1777.4 1257.1 1251.3 1681.9 1967.8 TRUE FALSE FALSE 1518.913876 1578.580619 1638.751785 1571.896562 1467.151476 1743.499056 1305.586768 1393.742934 1612.57137 1956.095438 0.776502949 0.80700593 0.837766784 0.80358889 0.750040845 0.891315946 0.667445331 0.712512747 0.824382767 1 10.93376105 -13.52287875 0.204148852 2.08022936 0.740681369 0.186192677 0.079772628 21.10717283 0.258774166 9.062239016 0.055998957 3.00E-14 13.52287875 -1.339547991 (ac)SDQQLDCALDLMR ddPTM_HeLa_CUDC101_4h_R1 2 SDQQLDCALDLMR 13 0 B1AK87;P47756-2;P47756;B1AK85;A0A6I8PIN8 B1AK87 CAPZB F-actin-capping protein subunit beta 0 0 ; ; 168.74 6.78E-43 4648900 174.02 132.96 133.63 0 59.349 136.812 117.19 58.032 0 178.93 FALSE FALSE TRUE 153.6216394 137.05634 140.854442 0 54.97094251 134.202539 121.7100576 64.63812831 0 177.8657164 0.863694491 0.770560751 0.791914512 0 0.309058674 0.754516057 0.684280591 0.363409709 0 1 7.474644648 -6.50136711 21.02677515 0.91477785 0.443677972 0 0.352620878 60.20072586 58843.42529 0.033135147 0.050193011 3.15E-07 6.50136711 -0.471099877 KSPSGPVKS(ph)PPLSPVGTTPVK ddPTM_HeLa_CUDC101_4h_R1 2 KSPSGPVKSPPLSPVGTTPVK 21 2 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 1 0 KS(0.082)PS(0.293)GPVKS(0.608)PPLS(0.016)PVGT(0.001)T(0.001)PVK;KS(0.046)PS(0.164)GPVKS(0.764)PPLS(0.025)PVGT(0.001)T(0.001)PVK ; 53.625 0.014869 209212000 10384.8 10555.8 11195.8 10955.7 10583.3 9535.2 8502.6 8129.7 10226.8 12157.2 TRUE FALSE FALSE 9167.509486 10881.01169 11801.07881 11402.5208 9802.591044 9353.331947 8830.54813 9055.152187 9805.246975 12084.88843 0.758592811 0.900381642 0.97651533 0.943535463 0.811144521 0.773969242 0.730709942 0.749295472 0.811364294 1 13.56091653 -13.52287875 0.329767057 2.868306738 0.814804273 0 0.100352005 44.12734976 0.592063034 55.48954941 0.033154015 3.00E-14 13.52287875 -2.053502465 NNTAAETEDDES(ph)DGEDR ddPTM_HeLa_CUDC101_4h_R1 2 NNTAAETEDDESDGEDR 17 0 A0A590UJS4;Q6KC79-2;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 NNTAAETEDDES(1)DGEDR;NNTAAETEDDES(1)DGEDR ; 254.82 7.83E-57 14853600 5082.4 4348 4097 4647.3 4858.5 4539.4 3884.6 3701.4 4727.3 5170.9 TRUE FALSE FALSE 4486.648776 4481.956726 4318.496213 4836.836981 4500.098134 4452.818508 4034.430323 4122.752414 4532.438693 5140.143257 0.872864539 0.871951715 0.840150945 0.940992642 0.875481073 0.866282959 0.784886748 0.802069555 0.881772835 1 12.32759285 -13.52287875 0.122266298 1.496376978 0.780635543 0.265371528 0.050526539 36.77803156 0.323456627 4.48598899 0.172122788 3.00E-14 13.52287875 -0.715741435 KGDS(ph)SAEELK ddPTM_HeLa_CUDC101_4h_R1 2 KGDSSAEELK 10 1 P26373;P26373-2 P26373 RPL13 60S ribosomal protein L13 1 0 KGDS(0.5)S(0.5)AEELK;KGDS(0.5)S(0.5)AEELK ; 129.37 0.0051994 33072000 5985.5 2090.1 7098.1 7234 3408.9 4103.5 4477.5 1865.03 6380 8614.1 TRUE FALSE FALSE 5283.888763 2154.493504 7481.844757 7529.033788 3157.432238 4025.232574 4650.198675 2077.337476 6117.0137 8562.86295 0.617070341 0.251609014 0.873755051 0.879265946 0.36873558 0.470080229 0.543065877 0.242598473 0.71436548 1 13.06387752 -13.52287875 0.113179295 2.595583117 0.254096686 0.268326581 0.217888835 67.36567869 0.557154031 24.69645106 1.181747139 3.00E-14 13.52287875 -2.341486431 SSS(ph)PTAGPSTEGAEGPEEK ddPTM_HeLa_CUDC101_4h_R1 2 SSSPTAGPSTEGAEGPEEK 19 0 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;A0A0C4DGG3 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 0 S(0.001)S(0.001)S(0.995)PT(0.003)AGPSTEGAEGPEEK;S(0.002)S(0.002)S(0.974)PT(0.021)AGPSTEGAEGPEEK ; 324.79 6.55E-168 37622000 13993.1 12200.7 12256 12324.4 13041.2 11723.2 11495.5 9759.8 15225.1 14808.3 TRUE FALSE FALSE 12352.85003 12576.58911 12918.59643 12827.0423 12079.17666 11499.59949 11938.88529 10870.81618 14597.51493 14720.21957 0.839175664 0.854375102 0.877608949 0.871389332 0.820584 0.781211139 0.811053478 0.738495518 0.991664211 1 13.84551157 -13.52287875 0.121187663 1.607257427 0.728323782 0.877051518 0.027773728 24.69397464 0.215677319 3.662409765 0.144226418 3.00E-14 13.52287875 -0.878933646 (ac)SESLVVCDVAEDLVEK ddPTM_HeLa_CUDC101_4h_R1 1 SESLVVCDVAEDLVEK 16 0 G3V4P8;P60983;G3V3X4 G3V4P8 GMFB Glia maturation factor beta 0 0 96.82 6.62E-11 0 270.87 209.07 233.45 235.73 331.64 280.31 336.08 287.96 340.06 262.09 FALSE FALSE TRUE 239.1190292 215.5111989 246.0710131 245.3440883 307.1755779 274.9635538 349.0427182 320.7402024 326.0425829 260.531077 0.917813844 0.827199585 0.944497739 0.941707573 1.179036226 1.055396373 1.339735444 1.23110151 1.25145371 1 8.025311662 -5.310245797 1.168878221 0.945846337 1.280192606 0.416887537 0.123825413 0.212785241 0.51764169 0.012305773 0.05400782 4.90E-06 5.310245797 0.334346268 SS(ph)PYGTLKPEEMSGPGLAEPK ddPTM_HeLa_CUDC101_4h_R1 1 SSPYGTLKPEEMSGPGLAEPK 21 1 Q5JSZ5;A0A494C0D3;Q5JSZ5-5;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 S(0.143)S(0.783)PY(0.032)GT(0.039)LKPEEMS(0.003)GPGLAEPK 69.981 0.016908 22241000 3002.4 3095.4 3131.9 3182.9 2889.1 2723.1 2755.3 2220 3269.2 3581.1 TRUE FALSE FALSE 2650.463223 3190.765605 3301.219987 3312.71242 2675.976849 2671.161404 2861.572844 2472.715826 3134.442192 3559.799458 0.744554084 0.896332966 0.927361225 0.930589619 0.751721236 0.750368507 0.80385788 0.694622227 0.880510891 1 11.79758025 -13.52287875 0.323075637 2.962405563 0.797443764 0.201948443 0.086423397 36.57470662 0.492345279 47.16488527 0.031588856 3.00E-14 13.52287875 -2.164961799 IACKS(ph)PPPESVDTPTSTK ddPTM_HeLa_CUDC101_4h_R1 4 IACKSPPPESVDTPTSTK 18 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IACKS(0.999)PPPES(0.001)VDTPTSTK;IACKS(0.986)PPPES(0.013)VDTPTSTK;IACKS(0.993)PPPES(0.005)VDT(0.002)PTSTK;IACKS(0.874)PPPES(0.024)VDT(0.073)PT(0.018)S(0.007)T(0.004)K ;;; 111.44 0.00023883 141245000 11021.3 11161.7 15387.4 11546.1 12242.6 11181.8 9364.4 7205.84 13396.2 16568.3 TRUE FALSE FALSE 9729.399921 11505.57875 16219.28939 12016.99986 11339.48779 10968.5258 9725.588045 8026.123699 12844.00297 16469.75101 0.590743595 0.698588505 0.984792628 0.729640652 0.688503899 0.665980062 0.590512148 0.487325139 0.779854107 1 14.00753112 -13.52287875 0.297789513 3.813051555 0.652898825 0.189726463 0.140650206 32.2136301 0.436004373 54.29664837 0.056454884 3.00E-14 13.52287875 -3.160152731 (ac)SETAPAAPAAAPPAEK(ac)APVK ddPTM_HeLa_CUDC101_4h_R1 2 SETAPAAPAAAPPAEKAPVK 20 1 P16403 P16403 HIST1H1C Histone H1.2 0 1 ; SETAPAAPAAAPPAEK(1)APVK;SETAPAAPAAAPPAEK(1)APVK 49.188 1.99E-05 2268890 1906.42 2488.91 2850.76 2645.7 2271.31 2352.59 2305.59 3417.8 1109.38 2067.9 FALSE TRUE FALSE 1682.952338 2565.590367 3004.880709 2753.603082 2103.759986 2307.718265 2394.517379 3806.868537 1063.650887 2055.600039 0.818715852 1.248098034 1.461802224 1.3395617 1.023428657 1.122649456 1.164875138 1.851950022 0.517440585 1 11.00534387 -7.188648963 5.833561729 0.914648142 1.300644285 0.464742029 0.251811691 0.169137544 10.44481172 0.036599547 0.044850726 6.48E-08 7.188648963 0.385996144 (ac)SETAPAAPAAPAPAEK(ac)TPVK ddPTM_HeLa_CUDC101_4h_R1 2 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 0 1 ; SETAPAAPAAPAPAEK(1)TPVK;SETAPAAPAAPAPAEK(1)TPVK 77.633 4.44E-27 5322400 3928.1 3202 4578.2 4235.6 3298 3306.7 3626.2 6558.8 2698.8 4076.3 FALSE TRUE FALSE 3467.654073 3300.649825 4825.71134 4408.346076 3054.713111 3243.630207 3766.063749 7305.42728 2587.554322 4052.053986 0.855776869 0.814562154 1.190929676 1.087928762 0.753867821 0.800490373 0.929420921 1.802894854 0.638578442 1 11.98443768 -4.261425932 22.23857626 0.929722686 1.802895045 0.745185336 0.157898092 0.080983014 125699.8356 0.018505908 0.142244988 5.48E-05 4.261425932 0.873172359 (ac)SETAPAAPAAPAPAEK(ac)TPVKK ddPTM_HeLa_CUDC101_4h_R1 2 SETAPAAPAAPAPAEKTPVKK 21 2 P10412 P10412 HIST1H1E Histone H1.4 0 1 ; SETAPAAPAAPAPAEK(0.985)TPVK(0.015)K;SETAPAAPAAPAPAEK(0.983)TPVK(0.017)K 72.615 0.00011438 4421100 2482.1 2246.02 3580.8 3074 2472.7 2555.82 2509.8 4824.1 2366.9 2880.3 FALSE TRUE FALSE 2191.152001 2315.217214 3774.388879 3199.371007 2290.293847 2507.071992 2606.603827 5373.256044 2269.33538 2863.167848 0.765289399 0.808620848 1.318256239 1.117423489 0.799916026 0.875628718 0.910391554 1.876682168 0.792595999 1 11.48339653 -6.785650704 24.97544505 0.880026779 1.109011657 0.197197053 0.293756886 364.9361462 376452.3437 0.046978597 0.061758523 1.64E-07 6.785650704 0.228984878 S(ph)PTSAPTQR ddPTM_HeLa_CUDC101_4h_R1 1 SPTSAPTQR 9 0 F8VV64;Q63HR2-2;Q63HR2-6;Q63HR2;Q63HR2-4;Q63HR2-5;H0YID7 F8VV64 TNS2 Tensin-2 1 0 S(0.99)PT(0.009)S(0.001)APTQR 95.815 0.021665 13454000 598.24 381.85 686.98 470.37 431.25 378.18 400.41 338.67 473.52 765.77 TRUE FALSE FALSE 528.1152141 393.6143459 724.1202168 489.5537217 399.4375467 370.9668466 415.8539478 377.2228238 454.0013052 761.215166 0.693779154 0.517086842 0.951268773 0.643121345 0.524736716 0.487335071 0.546302762 0.495553479 0.596416526 1 9.572160495 -13.52287875 0.084562726 2.412619865 0.199295472 0.087760366 0.168794159 68.86140098 0.444313556 17.86197939 1.757150631 3.00E-14 13.52287875 -2.213324393 EAS(ph)PAPLAQGEPGR ddPTM_HeLa_CUDC101_4h_R1 2 EASPAPLAQGEPGR 14 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 EAS(1)PAPLAQGEPGR;EAS(1)PAPLAQGEPGR ; 160.63 4.58E-05 16996800 2598.79 2780.48 2359.25 2279.19 2318 2114.01 2013.04 2032.58 2555.96 2949.41 TRUE FALSE FALSE 2294.163776 2866.143293 2486.798191 2372.14522 2147.005758 2073.688781 2090.683627 2263.960691 2450.602247 2931.866778 0.782492504 0.977583059 0.848196177 0.809090385 0.732299903 0.707292977 0.713089572 0.772190847 0.835850478 1 11.51760383 -13.52287875 0.101118312 1.706283064 0.624540825 0.364673672 0.077224144 60.15576409 0.453231889 9.056439826 0.58442788 3.00E-14 13.52287875 -1.081742239 RDS(ph)GDNSAPSGQER ddPTM_HeLa_CUDC101_4h_R1 2 RDSGDNSAPSGQER 14 1 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 RDS(1)GDNSAPSGQER;RDS(1)GDNSAPSGQER ; 152.68 8.62E-05 14139800 3913 2920.4 5043.8 4869 3370.6 3299 3207.1 2367.05 4409.2 5824.5 TRUE FALSE FALSE 3454.324072 3010.374062 5316.483085 5067.578866 3121.957553 3236.077072 3330.798921 2636.505404 4227.45091 5789.855615 0.596616617 0.519939401 0.918241047 0.875251337 0.539211642 0.558921895 0.575281862 0.455366348 0.730147898 1 12.49931166 -13.52287875 0.220156593 2.97228725 0.572812123 0.183876059 0.163656841 32.31569509 0.409463363 27.47777693 0.122653676 3.00E-14 13.52287875 -2.399475127 KATSDTLES(ph)PPKIIPK ddPTM_HeLa_CUDC101_4h_R1 1 KATSDTLESPPKIIPK 16 2 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 KATSDTLES(1)PPKIIPK 78.508 0.015444 18124000 2584.5 2114.8 2640.6 2169.5 2216.2 2167.4 1738 1542.7 2989 3098.5 TRUE FALSE FALSE 2281.548828 2179.954481 2783.358823 2257.981587 2052.715341 2126.060456 1805.035242 1718.314732 2865.792155 3080.069984 0.740745775 0.707761347 0.903667396 0.733094248 0.666450877 0.690263685 0.586037087 0.557881717 0.930430857 1 11.58874742 -13.52287875 0.048972655 2.347676889 4.92E-11 0.780517039 0.065444559 151.7085446 0.589103308 27.67097014 7.024105598 3.00E-14 13.52287875 -2.347676889 S(ph)FNGTDNHIR ddPTM_HeLa_CUDC101_4h_R1 2 SFNGTDNHIR 10 0 Q5T0W9 Q5T0W9 FAM83B Protein FAM83B 1 0 S(0.999)FNGT(0.001)DNHIR;S(1)FNGTDNHIR ; 151.3 0.00025712 20469300 1372.71 1063.75 1139.34 1298.28 1294.78 1040.72 868.29 953.82 1399.86 1585.1 TRUE FALSE FALSE 1211.803015 1096.522877 1200.936167 1351.22947 1199.266659 1020.87 901.7802362 1062.399013 1342.157178 1575.671755 0.769070722 0.695908189 0.762174078 0.857557715 0.761114525 0.647895094 0.572314782 0.67425148 0.851799986 1 10.62175131 -13.52287875 0.101838441 1.982649817 0.504066501 0.563232565 0.076753783 43.05596137 0.32634395 8.924104938 0.565587617 3.00E-14 13.52287875 -1.478583316 GSGGFGST(ph)GKN ddPTM_HeLa_CUDC101_4h_R1 2 GSGGFGSTGKN 11 1 H0YNW5;A0A0C4DGL3;P33316;P33316-2 H0YNW5;P33316;P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 GSGGFGS(0.036)T(0.964)GKN;GSGGFGS(0.268)T(0.732)GKN ; 127.87 0.011933 69998000 8764.1 3754.1 9231.9 9767.8 6887 5988.8 5782.3 1874.39 10810.4 12627 TRUE FALSE FALSE 7736.785484 3869.759371 9731.004439 10166.1731 6378.959731 5874.573618 6005.325248 2087.762981 10364.79074 12551.89404 0.616383906 0.308300832 0.775261837 0.809931399 0.508206945 0.468022881 0.478439766 0.166330513 0.825755117 1 13.61561746 -13.52287875 0.080377043 2.68272708 2.10E-10 0.513697366 0.170760925 94.77002313 0.584389936 28.47387722 3.122452693 3.00E-14 13.52287875 -2.68272708 KVTSPSSSSSSSSSDSES(ph)DDEADVSEVTPR ddPTM_HeLa_CUDC101_4h_R1 2 KVTSPSSSSSSSSSDSESDDEADVSEVTPR 30 1 P56181-2 P56181-2 1 0 KVTSPSSSSSSSSS(0.001)DS(0.068)ES(0.926)DDEADVS(0.004)EVTPR;KVTSPSSSSS(0.001)S(0.001)S(0.009)S(0.009)S(0.029)DS(0.175)ES(0.774)DDEADVS(0.001)EVTPR ; 99.663 2.32E-09 90999000 4893 3914.4 4418.5 4244 4656.1 3931.5 4278.2 3178.7 4151.7 5001.6 TRUE FALSE FALSE 4319.449957 4034.998024 4657.377475 4417.088664 4312.628779 3856.513188 4443.211607 3540.550359 3980.565169 4971.850261 0.868781184 0.811568694 0.936749345 0.888419488 0.867409225 0.775669617 0.893673658 0.712119266 0.800620485 1 12.27956713 -13.52287875 0.093880787 1.520965698 0.716414754 0 0.081814814 70.74598522 0.50025342 7.359054068 0.570109637 3.00E-14 13.52287875 -0.804550944 SHDS(ph)DDS(ph)DYASSK ddPTM_HeLa_CUDC101_4h_R1 1 SHDSDDSDYASSK 13 0 Q9UKJ3;Q9UKJ3-2 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 2 0 S(0.032)HDS(0.968)DDS(0.793)DYAS(0.104)S(0.104)K 127.03 0.014187 4947100 2101.3 1304.3 2273.7 2558.8 2180.1 2112.4 1697.4 1020.5 2661.5 2634.2 TRUE FALSE FALSE 1854.988799 1344.483937 2396.6231 2663.158924 2019.278366 2072.109489 1762.869287 1136.669595 2551.791843 2618.531661 0.708408009 0.513449563 0.915254581 1.017042858 0.771149112 0.79132497 0.673228173 0.434086634 0.974512503 1 11.35454233 -13.52287875 0.253770854 2.740016297 0.708237041 0.291613347 0.161491914 48.97421832 0.649603753 42.7059146 0.099171131 3.00E-14 13.52287875 -2.031779256 TQSAS(ph)PPPK ddPTM_HeLa_CUDC101_4h_R1 1 TQSASPPPK 9 0 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 T(0.243)QS(0.005)AS(0.752)PPPK 84.718 0.036121 12414000 2898.4 1135 3407.7 3237.2 2200.9 1993.7 1932.9 972.22 2995.9 4801.6 TRUE FALSE FALSE 2558.653946 1169.968005 3591.93057 3369.227008 2038.543992 1955.673494 2007.4526 1082.893595 2872.407734 4773.03987 0.536063812 0.245120099 0.752545687 0.705887045 0.42709553 0.409733325 0.42058157 0.226877132 0.601798395 1 12.22069267 -13.52287875 0.156232831 3.076027474 0.299033384 0.239060691 0.198259056 30.21431433 0.317585366 19.08721977 0.331632505 3.00E-14 13.52287875 -2.776994091 (ac)SETAPAETAT(ph)PAPVEKS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 1 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 2 0 S(0.016)ET(0.02)APAET(0.262)AT(0.704)PAPVEKS(0.999)PAK 45.912 0.0023311 11372000 2645.2 2595.2 2952.5 2545 2483.6 2307.8 2077.7 1542.4 2710.2 3282.2 TRUE FALSE FALSE 2335.133666 2675.155036 3112.121081 2648.7961 2300.389776 2263.78256 2157.837585 1717.980581 2598.484409 3262.677328 0.715710881 0.819926326 0.953854999 0.811847398 0.705061992 0.693841999 0.661370209 0.526555466 0.796427028 1 11.6718406 -13.52287875 0.041708438 2.244013954 2.12E-14 0.451520395 0.098153483 350.4357671 1.165357371 55.79061555 17.29194274 3.00E-14 13.52287875 -2.244013954 (ac)SGEDEQQEQTIAEDLVVTK ddPTM_HeLa_CUDC101_4h_R1 3 SGEDEQQEQTIAEDLVVTK 19 0 Q9UQ80;F8VR77 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 0 ;; ;; 187.11 3.13E-144 76364600 16491.1 13730.8 13567.1 13502.2 15307.5 13828.1 14787.4 15117.2 14806.6 14863.4 FALSE FALSE TRUE 14558.03826 14153.82967 14300.57846 14052.87808 14178.29622 13564.35203 15357.75497 16838.08094 14196.26568 14774.99184 0.985316163 0.957958544 0.967890786 0.951125945 0.959614488 0.918061559 1.039442535 1.139633858 0.960830695 1 13.85086971 -4.40432799 3.418085006 0.979147504 1.140328785 0.807503452 0.025916466 0.097591318 1.856971008 0.004063368 0.031963285 3.94E-05 4.40432799 0.161181281 TACNMT(ph)Y(ph)GS(ph)FGGVK ddPTM_HeLa_CUDC101_4h_R1 1 TACNMTYGSFGGVK 14 0 F8WCG5;A0A5F9ZGY2;A0A5F9ZHP5;A0A5F9ZH74;A0A5F9ZH37;A0A5F9ZHE7;A0A5F9ZH14;A0A5F9ZGX9;Q3SYG4-5;Q3SYG4-6;Q3SYG4-2;Q3SYG4-4;Q3SYG4-7;Q3SYG4-3;Q3SYG4 F8WCG5 BBS9 Protein PTHB1 3 0 T(0.635)ACNMT(0.835)Y(0.817)GS(0.713)FGGVK 45.33 0.04058 11718000 787.37 645.73 581.7 752.4 685.56 665.15 588.22 590.52 555.51 769.98 TRUE FALSE FALSE 695.0756822 665.6241759 613.1484615 783.0861242 634.9876046 652.463372 610.9078424 657.7424098 532.6116427 765.4001247 0.908120681 0.869642105 0.80108226 1.023106868 0.829615235 0.852447434 0.798154877 0.859344529 0.695860407 1 9.580070326 -13.52287875 0.090447789 1.481757038 0.743980904 0 0.112821467 88.24505439 0.604126968 8.121941187 0.686773093 3.00E-14 13.52287875 -0.737776134 RVGDPPQPLPEEPMEVQGAERAS(ph)PEPQR ddPTM_HeLa_CUDC101_4h_R1 2 RVGDPPQPLPEEPMEVQGAERASPEPQR 28 2 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR ; 63.63 0.0006168 129381000 7857.2 6375.4 6951 6674.7 7515.2 6690.4 6010.6 6352.6 7389.3 7585.2 TRUE FALSE FALSE 6936.190927 6571.818517 7326.792086 6946.923117 6960.818668 6562.791767 6242.430855 7075.754306 7084.709926 7540.082893 0.919909108 0.871584386 0.971712405 0.921332459 0.923175351 0.870387217 0.8278995 0.938418636 0.939606371 1 12.88036467 -13.52287875 0.131286246 1.349655096 0.858853644 0.238858613 0.041906074 47.19438275 0.438364311 4.279949532 0.132389147 3.00E-14 13.52287875 -0.490801453 (ac)SHTILLVQPTK ddPTM_HeLa_CUDC101_4h_R1 1 SHTILLVQPTK 11 0 P84090;G3V279 P84090 ERH Enhancer of rudimentary homolog 0 0 59.542 0.0001239 840210 1434.6 1572.7 1603.5 1426.9 1541.8 1479 1335.5 1472 1521.3 1637 FALSE FALSE TRUE 1266.438363 1621.153023 1690.19006 1485.09515 1428.064486 1450.790539 1387.010682 1639.56653 1458.59137 1627.263051 0.778262839 0.996245212 1.038670459 0.912633731 0.877586746 0.89155256 0.852358002 1.007560842 0.896346395 1 10.66823177 -4.237342397 22.11045897 0.907209337 1.007561408 0.111417343 0.073976655 2684.622995 2463115.756 0.013179122 0.844120159 5.79E-05 4.237342397 0.100352072 GDDDEES(ph)DEEAVKK ddPTM_HeLa_CUDC101_4h_R1 3 GDDDEESDEEAVKK 14 1 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 GDDDEES(1)DEEAVKK;GDDDEES(1)DEEAVKK;GDDDEES(1)DEEAVKK ;; 242.01 6.47E-44 227425000 10309.4 9104.1 9596.9 8554.4 7808.3 8734.5 8416.2 6885.9 9046.2 12093.2 TRUE FALSE FALSE 9100.94776 9384.58653 10115.73744 8903.285407 7232.297265 8567.903965 8740.815653 7669.763022 8673.311807 12021.26911 0.757070462 0.780665206 0.841486648 0.740627743 0.601625103 0.712728738 0.727112551 0.638016082 0.721497184 1 13.55330159 -13.52287875 0.140797827 2.027804795 0.611233195 0.050951173 0.101795076 22.08246443 0.215957632 6.273548728 0.155238624 3.00E-14 13.52287875 -1.416571599 (ac)SILK(ac)IHAR ddPTM_HeLa_CUDC101_4h_R1 2 SILKIHAR 8 1 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798 P06733 ENO1 Alpha-enolase;Enolase 0 1 ; SILK(1)IHAR;SILK(1)IHAR 54.611 0.0028415 7799900 0 68.159 130.91 63.887 56.04 0 222.95 0 0 0 FALSE TRUE FALSE 0 70.258898 137.9873906 66.492588 51.90604085 0 231.5492562 0 0 0 0 (ac)SK(ac)SESPKEPEQLR ddPTM_HeLa_CUDC101_4h_R1 1 SKSESPKEPEQLR 13 2 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 1 SK(1)SESPKEPEQLR 95.483 1.37E-07 9212400 538.68 648.87 743.68 633.41 732.7 663.2 400.23 367.22 557.06 1000.1 FALSE TRUE FALSE 475.536747 668.8609156 783.8855903 659.2431976 678.6501807 650.550565 415.6670052 409.0228404 534.097751 994.1513607 0.478334352 0.672795856 0.788497226 0.663121556 0.682642712 0.654377785 0.418112394 0.411429141 0.537239873 1 9.95732171 -9.411189494 1.005167507 1.013049109 0.595463233 0 0.183870139 0.336312475 0.576600097 0.105498565 0.023583029 3.88E-10 9.411189494 -0.417585876 (ac)SKPHSEAGTAFIQTQQLHAAMADTFLEHMCR ddPTM_HeLa_CUDC101_4h_R1 1 SKPHSEAGTAFIQTQQLHAAMADTFLEHMCR 31 1 P14618;B4DNK4;P14618-2;H3BTN5;H3BQ34;H3BR70;H3BUW1;H3BTJ2;H3BT25;H3BU13;H3BN34;H3BQZ3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 53.064 2.89E-08 29912000 1849.5 1746.6 1236 1385.7 1944.2 2182.2 1665.4 1777.7 1776.8 1168.8 FALSE FALSE TRUE 1632.704414 1800.410676 1302.821899 1442.214836 1800.780239 2140.578171 1729.635036 1980.066182 1703.559552 1161.847926 1.405265162 1.54960958 1.121335994 1.241311194 1.549927662 1.842391008 1.488693139 1.704238686 1.466250027 1 10.18220553 -8.808369002 0.070947865 1.14E-12 2.41039424 0.224346879 0.214762518 26.96040951 0.639153446 13.28990076 8.412309603 1.55E-09 8.808369002 2.41039424 AS(ph)SSKESPSPSVR ddPTM_HeLa_CUDC101_4h_R1 1 ASSSKESPSPSVR 13 1 H0Y517;H7C1U3;Q5T0F9-3;Q5T0F9-2;Q5T0F9 H0Y517 CC2D1B Coiled-coil and C2 domain-containing protein 1B 1 0 AS(0.437)S(0.296)S(0.097)KES(0.169)PS(0.001)PSVR 119.17 0.011553 9160400 2847.2 2209.5 2121.1 2303.7 2908.9 2131.4 2652.5 1498.4 2603.8 2956.2 TRUE FALSE FALSE 2513.455532 2277.572076 2235.773082 2397.654843 2694.316242 2090.747096 2754.807814 1668.971799 2496.470262 2938.616391 0.855319374 0.77504913 0.760825091 0.815912839 0.916865587 0.711473298 0.937450639 0.567944766 0.849539351 1 11.52092133 -13.52287875 0.120493241 1.724688981 0.690531889 0.159744088 0.107891942 60.15647802 0.523039151 10.43070885 0.417712402 3.00E-14 13.52287875 -1.034157092 (ac)SLDIQSLDIQCEELSDAR ddPTM_HeLa_CUDC101_4h_R1 2 SLDIQSLDIQCEELSDAR 18 0 P13489;E9PR82;E9PMI1;E9PMA9;E9PMN0;E9PIK5;E9PMJ3;E9PLZ3;E9PIM9 P13489 RNH1 Ribonuclease inhibitor 0 0 ; ; 217.09 2.31E-103 11630300 60.196 57.93 165.72 0 146.68 55.873 132.74 174.32 0 182.99 FALSE FALSE TRUE 53.13991613 59.71475464 174.6793245 0 135.8597086 54.80731562 137.8598263 194.1638842 0 181.9015673 0.292135559 0.328280594 0.960295873 0 0.74688586 0.301302053 0.757881465 1.067411826 0 1 7.507014164 -9.51370273 1.282868851 0.998469188 0.519131744 0 0.442892744 0.508756613 1.506452559 0.210531732 0.051420397 3.06E-10 9.51370273 -0.479337444 KET(ph)SPESSLIQDEIAVK ddPTM_HeLa_CUDC101_4h_R1 1 KETSPESSLIQDEIAVK 17 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 KET(0.471)S(0.471)PES(0.054)S(0.004)LIQDEIAVK 110.64 0.0099984 32555000 4826.2 4473.3 4457.7 4244.4 4490.7 4624.1 4054.5 3644.4 4800.5 5398.9 TRUE FALSE FALSE 4260.480152 4611.117071 4698.696746 4417.504978 4159.430008 4535.902997 4210.883423 4059.263765 4602.621358 5366.787103 0.793860474 0.859195079 0.875513907 0.823119101 0.775031677 0.845180349 0.784619055 0.756367578 0.857612063 1 12.38984294 -13.52287875 0.245135419 2.171143341 0.791681646 0.246765245 0.057684278 15.06260605 0.198004584 8.509166777 0.02328783 3.00E-14 13.52287875 -1.379461695 SHTPSPT(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 SHTPSPTSPK 10 0 B7Z385;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;P40123 B7Z385 CAP2 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 2 1 0 SHTPSPT(0.793)S(0.207)PK 132.14 0.0028979 55236000 6626.3 5137.3 6706.5 6751 6382.5 5516.2 5733.8 4826.9 7138.7 7187 TRUE FALSE FALSE 5849.575159 5295.574124 7069.073676 7026.33496 5911.675691 5410.987676 5954.954587 5376.374785 6844.439764 7144.251404 0.818780699 0.741235691 0.989477172 0.98349492 0.827473077 0.757390435 0.83353094 0.752545576 0.958034562 1 12.80256713 -13.52287875 0.251420939 2.044333626 0.821210022 0.310976009 0.083206426 41.4784211 0.548930689 21.50103339 0.052199886 3.00E-14 13.52287875 -1.223123604 (ac)SNGYEDHMAEDCR ddPTM_HeLa_CUDC101_4h_R1 1 SNGYEDHMAEDCR 13 0 Q15717;M0QZR9 Q15717 ELAVL1 ELAV-like protein 1 0 0 78.655 0.00083711 0 0 136.23 209.76 0 98.931 0 64.813 93.461 0 0 FALSE FALSE TRUE 0 140.4270848 221.1002601 0 91.63305723 0 67.31285912 104.1002225 0 0 0 TSSVSSISQVS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 TSSVSSISQVSPER 14 0 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 0 TSSVSSIS(0.002)QVS(0.998)PER;TSSVSSISQVS(1)PER ; 247.17 7.13E-56 27982000 1353.88 1107.1 1016.48 1038.26 1406.34 964.4 994.76 724.82 1420.11 1638.99 TRUE FALSE FALSE 1195.180239 1141.208439 1071.433983 1080.604731 1302.5971 946.0056768 1033.128226 807.330579 1361.572465 1629.241215 0.733580901 0.700453947 0.657627596 0.663256442 0.799511508 0.580641877 0.634116187 0.495525507 0.835709564 1 10.6699845 -13.52287875 0.114009457 2.201350886 0.453235362 0.648346719 0.07999647 26.33212195 0.21907242 7.264129336 0.340598209 3.00E-14 13.52287875 -1.748115524 (ac)SQPGQK(ac)PAASPRPR ddPTM_HeLa_CUDC101_4h_R1 1 SQPGQKPAASPRPR 14 2 P20810-6;P20810-9;P20810-7;P20810-10;P20810-5;F8W7E0;E9PSG1 P20810-6 CAST Calpastatin 0 1 SQPGQK(1)PAASPRPR 67.113 0.030122 180750 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 AVSLDSPVS(ph)VGSSPPVK ddPTM_HeLa_CUDC101_4h_R1 1 AVSLDSPVSVGSSPPVK 17 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 AVSLDS(0.064)PVS(0.38)VGS(0.278)S(0.278)PPVK 86.641 0.0087109 25132000 1192.4 1399.6 1529.9 1228.7 1623.2 1176.4 889.61 716.83 1562.1 1740.3 TRUE FALSE FALSE 1052.62868 1442.720017 1612.611022 1278.811697 1503.45977 1153.96213 923.9225557 798.4310297 1497.709577 1729.948618 0.608473956 0.833966976 0.932172785 0.739219468 0.869077702 0.667049945 0.534075143 0.461534534 0.865753792 1 10.75651347 -13.52287875 0.043876283 2.180103673 1.35E-09 0.450353462 0.125634181 486.2788605 1.698493563 77.29752475 22.56772832 3.00E-14 13.52287875 -2.180103671 VNVTVDYIRPAS(ph)PATETVPAFSER ddPTM_HeLa_CUDC101_4h_R1 1 VNVTVDYIRPASPATETVPAFSER 24 1 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 1 0 VNVT(0.003)VDY(0.019)IRPAS(0.673)PAT(0.13)ET(0.167)VPAFS(0.007)ER 57.896 0.0047216 79697000 913.26 888.32 742.54 806.11 815.22 897.32 572 768.39 737.52 1051.6 TRUE FALSE FALSE 806.2090472 915.6880863 782.6839585 838.9866501 755.0828447 880.205116 594.0622316 855.8604117 707.1191134 1045.345036 0.771237265 0.875967316 0.748732649 0.802593039 0.722328818 0.842023528 0.568292966 0.81873485 0.67644566 1 10.0297635 -13.52287875 0.175691175 2.006592001 0.70298874 0 0.127916674 26.60756978 0.301103104 9.144615358 0.103235467 3.00E-14 13.52287875 -1.303603261 QDS(ph)RGSPLLGPVVPGPSPIPSVTEK ddPTM_HeLa_CUDC101_4h_R1 2 QDSRGSPLLGPVVPGPSPIPSVTEK 25 1 P49454 P49454 CENPF Centromere protein F 1 0 QDS(0.801)RGS(0.199)PLLGPVVPGPSPIPSVTEK;QDS(0.849)RGS(0.151)PLLGPVVPGPSPIPSVTEK ; 98.446 4.81E-06 8516900 3370.4 3084.1 3069.6 2520.1 3266.9 2693.9 2934.5 2600.7 3664.6 3453.2 TRUE FALSE FALSE 2975.326821 3179.117465 3235.551861 2622.880571 3025.907296 2642.518346 3047.684648 2896.753176 3513.543637 3432.660213 0.866769979 0.926138117 0.942578543 0.764095602 0.881505045 0.769816464 0.887849207 0.843879964 1.023562898 1 11.74511134 -13.52287875 0.161287412 1.568295169 0.814414008 0.597682912 0.051935934 34.41645036 0.369386706 6.140086566 0.095230731 3.00E-14 13.52287875 -0.753881161 SPGAPSAGEAEARPSPSTTPLPDS(ph)SPSR ddPTM_HeLa_CUDC101_4h_R1 1 SPGAPSAGEAEARPSPSTTPLPDSSPSR 28 1 Q5SYE7-2;Q5SYE7 Q5SYE7-2 NHSL1 NHS-like protein 1 1 0 SPGAPS(0.002)AGEAEARPS(0.005)PS(0.005)T(0.005)T(0.014)PLPDS(0.435)S(0.435)PS(0.097)R 49.618 0.015704 10873000 1096.8 1051.4 901.28 1075.7 997.65 784.02 732.23 1019.3 1144.4 1189.8 TRUE FALSE FALSE 968.2347666 1083.792388 950.005923 1119.571696 924.0553471 769.0661248 760.4723564 1135.332992 1097.227348 1182.723017 0.81864879 0.91635351 0.803236184 0.946605147 0.781294804 0.650250409 0.642984321 0.959931426 0.927712856 1 10.20789653 -13.52287875 0.128549063 1.688666417 0.710026573 0.271377607 0.10268857 66.10585178 0.604308761 11.66783128 0.385147099 3.00E-14 13.52287875 -0.978639844 SPGS(ph)TPTTPTSSQAPQK ddPTM_HeLa_CUDC101_4h_R1 1 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 S(0.006)PGS(0.68)T(0.274)PT(0.038)T(0.002)PTSSQAPQK 133.96 0.00023906 21795000 3123 2565.7 2812.7 2687.9 2582.2 2897.6 2601.7 2080.2 2614.8 3181 TRUE FALSE FALSE 2756.926674 2644.746176 2964.76307 2797.52418 2391.71625 2842.333108 2702.048441 2317.00156 2507.016837 3162.079271 0.871871461 0.836394647 0.937599224 0.884710325 0.756374539 0.898881041 0.854516351 0.732746197 0.792838074 1 11.62665782 -13.52287875 0.107655645 1.521444737 0.746054537 0 0.083156304 56.1778162 0.445996795 6.466886418 0.354569529 3.00E-14 13.52287875 -0.775390199 SASDSGCDPASK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 SASDSGCDPASKK 13 1 Q7LBC6;H0Y9V5 Q7LBC6 KDM3B Lysine-specific demethylase 3B 0 1 ; SASDSGCDPASK(1)K;SASDSGCDPASK(1)K 263.07 7.18E-53 7354700 6237 7078.2 7633.5 7288.3 7818.8 7286.5 7969.2 8831 4083.9 4015 FALSE TRUE FALSE 5505.908315 7296.270952 8046.1901 7585.548377 7242.022701 7147.522153 8276.574713 9836.285344 3915.559913 3991.118601 1.37954014 1.828126819 2.016023803 1.900607106 1.814534577 1.790856867 2.073748124 2.464543484 0.981068293 1 11.96257744 -7.261930201 0.319307001 0.885239198 2.273618837 0.848512063 0.174300021 0.394419144 0.126400585 0.175306349 0.200427113 5.47E-08 7.261930201 1.388379639 EADLVFIS(ph)VNTPTK ddPTM_HeLa_CUDC101_4h_R1 1 EADLVFISVNTPTK 14 0 O60701;E7ER83;E7ETF4;E7EV97 O60701 UGDH UDP-glucose 6-dehydrogenase 1 0 EADLVFIS(0.988)VNT(0.012)PTK 142.95 0.00043536 15281000 10024 8702.2 8196.9 8600.9 8055.6 9225.8 7094 6394.9 9661.5 11441 TRUE FALSE FALSE 8849.001915 8970.304467 8640.049208 8951.681878 7461.354437 9049.833236 7367.617956 7122.869567 9263.248881 11372.94842 0.778074567 0.788740451 0.759701784 0.787103005 0.656061573 0.795733252 0.647819517 0.626299294 0.814498452 1 13.4733187 -13.52287875 0.111389575 1.94490223 0.557399954 0.493660502 0.072812591 24.45986787 0.199695596 5.223597143 0.26118368 3.00E-14 13.52287875 -1.387502276 (ac)SSGNAK(ac)IGHPAPNFK ddPTM_HeLa_CUDC101_4h_R1 1 SSGNAKIGHPAPNFK 15 1 Q06830;A0A0A0MSI0;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 1 SSGNAK(1)IGHPAPNFK 69.979 1.72E-11 6364200 1383.8 1162.2 936.4 1165.5 2397.8 2090.3 1839.9 1563.4 1911.9 1705.9 FALSE TRUE FALSE 1221.593062 1198.006004 987.0246165 1213.034128 2220.919071 2050.43101 1910.865559 1741.371137 1833.090673 1695.753231 0.720383744 0.706474257 0.582056751 0.715336469 1.309694731 1.209156481 1.126853557 1.026901264 1.080989049 1 10.72771053 -5.765309874 24.99962254 0.818063343 1.168130592 0.579271279 0.15292137 61.58890099 397807.6858 0.024671923 0.045974362 1.72E-06 5.765309874 0.350067248 SKENMAQESSIQEQGVTSNTS(ph)DSESSSK ddPTM_HeLa_CUDC101_4h_R1 2 SKENMAQESSIQEQGVTSNTSDSESSSK 28 1 Q92796-3;Q92796-2 Q92796-3 1 0 SKENMAQESSIQEQGVTS(0.002)NT(0.205)S(0.432)DS(0.205)ES(0.098)S(0.033)S(0.024)K;SKENMAQESSIQEQGVTS(0.003)NT(0.175)S(0.635)DS(0.175)ES(0.009)S(0.003)S(0.001)K ; 142.47 3.20E-16 30306000 2454.45 2547.52 2059.53 2058.32 2221.09 2043.73 1686.52 1634.43 2294.17 2946.8 TRUE FALSE FALSE 2166.743092 2626.006072 2170.874422 2142.267186 2057.244616 2004.749255 1751.569641 1820.486905 2199.603342 2929.272303 0.739686471 0.896470454 0.741096831 0.731330844 0.702305693 0.684384737 0.597953847 0.62148094 0.750904359 1 11.5163266 -13.52287875 0.076050342 2.034088466 0.359441951 0.410015999 0.087774391 54.84960148 0.3217445 9.807586656 1.204302214 3.00E-14 13.52287875 -1.674646514 (ac)SSMSSAEEQFQWQSQDGQK ddPTM_HeLa_CUDC101_4h_R1 1 SSMSSAEEQFQWQSQDGQK 19 0 D6RF55;B4DRK2;E7EPC8 D6RF55 CTNND2 0 0 45.342 0.038643 10221000 874.05 1168.6 1066.8 1313.6 1724.8 1447.8 1309.4 1131.1 1892 1016.2 FALSE FALSE TRUE 771.595184 1204.603181 1124.474435 1367.174286 1597.56494 1420.185627 1359.903997 1259.859852 1814.010959 1010.155597 0.763837953 1.192492705 1.113169533 1.353429402 1.581503824 1.405907794 1.346232205 1.247193854 1.795773804 1 9.980361817 -6.709666309 1.529966212 0.892644017 1.39361337 0 0.308784868 0.141866582 0.673634232 0.023791231 0.035730193 1.95E-07 6.709666309 0.500969353 (ac)SSNSASAANGNDSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 SSNSASAANGNDSKK 15 1 A6NLN1;K7ES59 A6NLN1 PTBP1 0 1 SSNSASAANGNDSK(1)K 107.09 1.63E-12 179510 0 71.806 177.7 0 140.3 0 59.406 0 204.08 204.04 FALSE TRUE FALSE 0 74.01825775 187.3069995 0 129.9503485 0 61.69730932 0 195.667736 202.826361 0 0.364934111 0.923484495 0 0.64069753 0 0.304187824 0 0.964705648 1 7.664101359 -9.455276785 1.126390386 1.010026239 0.269066443 0.475371385 0.294871938 0.362855758 0.80549363 0.215378126 0.050518635 3.51E-10 9.455276785 -0.740959795 QKS(ph)PEIHR ddPTM_HeLa_CUDC101_4h_R1 1 QKSPEIHR 8 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 QKS(1)PEIHR 60.518 0.038617 20231000 3756.3 938.1 4863.4 4364.6 2190.7 1564 2572.1 781.18 4061.8 7643.3 TRUE FALSE FALSE 3315.992208 967.0017491 5126.330115 4542.607253 2029.096425 1534.169306 2671.306759 870.1063736 3894.370885 7597.837312 0.436438959 0.12727329 0.674709118 0.597881616 0.267062368 0.201921842 0.351587781 0.114520269 0.512563079 1 12.89137311 -13.52287875 0.160786484 3.61089061 0.153418463 0.250441999 0.228354478 25.67667726 0.275029784 20.92761638 0.328237433 3.00E-14 13.52287875 -3.457472147 (ac)SSSPVNVKK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPVNVKK 9 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1X7SBS1 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 45.081 0.022929 44298000 12016 10959 11687 11198 12704 11709 11191 12131 11905 10318 FALSE FALSE TRUE 10607.5027 11296.6338 12318.83457 11654.70284 11766.85123 11485.67033 11622.64062 13511.944 11414.27086 10256.62808 1.034209549 1.101398405 1.201060863 1.136309395 1.14724363 1.119829075 1.133183394 1.317386562 1.112867774 1 13.32426889 -1 0.123307492 0.928375829 1.940340201 0.399651348 0.063799526 37.51884824 0.316186614 0.21999914 6.573133755 0.1 1 1.011964372 KQEGPATQVDSAVGTLPATS(ph)PQSTSVQAK ddPTM_HeLa_CUDC101_4h_R1 3 KQEGPATQVDSAVGTLPATSPQSTSVQAK 29 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06 E7ETY2 TCOF1 Treacle protein 1 0 KQEGPATQVDSAVGT(0.001)LPAT(0.253)S(0.696)PQS(0.007)T(0.032)S(0.011)VQAK;KQEGPATQVDSAVGTLPAT(0.216)S(0.773)PQS(0.001)T(0.007)S(0.002)VQAK;KQEGPATQVDSAVGTLPAT(0.231)S(0.768)PQSTSVQAK ;; 175.79 4.41E-19 132370000 12108.8 11693.9 9799.8 9969 11235.6 10371.3 9770.4 9340.4 12243.7 12256.3 TRUE FALSE FALSE 10689.42482 12054.1752 10329.60683 10375.57891 10406.77217 10173.48473 10147.2476 10403.67338 11739.0095 12183.39898 0.877376242 0.989393454 0.847842777 0.851616115 0.854176424 0.835028447 0.832874932 0.853922078 0.963525 1 13.57262906 -13.52287875 0.119234218 1.472732666 0.788157201 0.65112541 0.037198052 37.62723424 0.324455113 4.268900398 0.176243769 3.00E-14 13.52287875 -0.684575464 LLES(ph)PGVEAGEGEAEKEEAGAQGR ddPTM_HeLa_CUDC101_4h_R1 3 LLESPGVEAGEGEAEKEEAGAQGR 24 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-3 A0A0G2JHC2 PPP1R18 Phostensin 1 0 LLES(1)PGVEAGEGEAEKEEAGAQGR;LLES(1)PGVEAGEGEAEKEEAGAQGR;LLES(1)PGVEAGEGEAEKEEAGAQGR ;; 135.12 5.85E-09 53423600 4921.14 4316.3 3626.05 4064.66 3963.37 4099.24 3735.61 2648.14 4598.3 5586.2 TRUE FALSE FALSE 4344.291429 4449.280087 3822.085231 4230.434404 3671.000091 4021.053827 3879.693729 2949.593553 4408.756128 5552.973034 0.782336129 0.801242877 0.688295298 0.761832333 0.661087325 0.724126302 0.698669651 0.531173758 0.793945171 1 12.43904467 -13.52287875 0.080494716 2.072080772 0.37958984 0.516760031 0.079508347 38.74011081 0.23920091 7.352670543 0.803828619 3.00E-14 13.52287875 -1.692490932 DADLS(ph)PVNASIIK ddPTM_HeLa_CUDC101_4h_R1 2 DADLSPVNASIIK 13 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 DADLS(1)PVNASIIK;DADLS(1)PVNASIIK ; 192.4 6.22E-12 44980000 8081.6 7649.8 5620.5 6403.4 6942.9 7309.6 6124.1 4907.1 7563.6 9193 TRUE FALSE FALSE 7134.287099 7885.481271 5924.361231 6664.55833 6430.736099 7170.181559 6360.308588 5465.704429 7251.825207 9138.319627 0.780700106 0.862902765 0.648298754 0.729298011 0.703711006 0.784628012 0.696004172 0.598108258 0.79356222 1 13.15771319 -13.52287875 0.122813368 1.986556255 0.580560641 0.354226582 0.087012617 27.01874881 0.238454965 6.506280869 0.246372252 3.00E-14 13.52287875 -1.405995613 LSQPES(ph)AEK ddPTM_HeLa_CUDC101_4h_R1 1 LSQPESAEK 9 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 LSQPES(1)AEK 96.23 0.021277 10136000 3403.8 3099.9 4208 2695 2957.3 2772 2553.2 2766.2 6274.6 5207.4 TRUE FALSE FALSE 3004.811724 3195.404245 4435.497209 2804.913749 2739.145871 2719.128718 2651.677779 3081.093027 6015.958332 5176.426153 0.580479975 0.617299301 0.856864771 0.541862989 0.529157722 0.525290739 0.512260332 0.595216262 1.162183745 1 12.33774068 -13.52287875 0.211779266 3.115839423 0.52214187 0.787874044 0.100870187 18.1601717 0.226391805 15.84955635 0.083775576 3.00E-14 13.52287875 -2.593697552 YYGGAGGS(ph)PGKK ddPTM_HeLa_CUDC101_4h_R1 1 YYGGAGGSPGKK 12 1 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 YYGGAGGS(1)PGKK 159.58 0.00027205 32775000 2637.7 2275.8 2441 2307.7 2203.7 2060.5 1681.9 1951.7 2502.3 3226.4 TRUE FALSE FALSE 2328.512804 2345.914701 2572.967844 2401.817981 2041.137441 2021.199396 1746.771446 2173.873639 2399.154135 3207.209229 0.726024602 0.731450471 0.802245086 0.748880977 0.636421666 0.630205032 0.544639068 0.677808488 0.748050396 1 11.64710276 -13.52287875 0.120337198 2.115498094 0.506951456 0.348745981 0.093530083 24.22429531 0.210406838 6.523865633 0.262244914 3.00E-14 13.52287875 -1.608546637 LSVPTS(ph)DEEDEVPAPK ddPTM_HeLa_CUDC101_4h_R1 2 LSVPTSDEEDEVPAPK 16 0 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 LSVPT(0.03)S(0.97)DEEDEVPAPK;LSVPT(0.271)S(0.729)DEEDEVPAPK ; 222.42 1.58E-32 32475000 10312.3 9834.8 9340.2 9066.9 8300.4 8495.1 7200.4 7305.1 8603.6 12534.2 TRUE FALSE FALSE 9103.507826 10137.79853 9845.159465 9436.687372 7688.096029 8333.070121 7478.12184 8136.683056 8248.955966 12459.64602 0.730639363 0.813650606 0.790163657 0.757380054 0.617039683 0.668804724 0.600187343 0.653042875 0.662053798 1 13.60497546 -13.52287875 0.113400571 2.034986052 0.513553766 0 0.113495793 25.92643305 0.214766079 6.18889772 0.294542477 3.00E-14 13.52287875 -1.521432285 (ac)SVPAFIDISEEDQAAELR ddPTM_HeLa_CUDC101_4h_R1 4 SVPAFIDISEEDQAAELR 18 0 E9PRI2;E7ESM3;Q7L2H7 E9PRI2 EIF3M Eukaryotic translation initiation factor 3 subunit M 0 0 ;;; ;;; 215.53 4.80E-56 42346600 126.179 212.503 0 131.985 118.109 222.937 60.446 60.663 109.61 197.74 FALSE FALSE TRUE 111.3884889 219.0499656 0 137.3679188 109.3963344 218.6848482 62.77742247 67.56863071 105.0918294 196.5638337 0.566678452 1.114396079 0 0.698846355 0.556543553 1.112538579 0.319374227 0.343749048 0.534644789 1 7.61885409 -13.52287874 0.216746335 3.169348326 0.525249761 0 0.353511268 59.05560706 0.743529817 54.1915243 0.259045247 3.00E-14 13.52287874 -2.644098565 RKS(ph)HEAEVLK ddPTM_HeLa_CUDC101_4h_R1 3 RKSHEAEVLK 10 2 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK ;; 93.011 0.0098654 100441000 13781.1 6142.7 16719.1 16104.8 10409.7 10032.4 9599.4 2670.77 16647.8 23607.7 TRUE FALSE FALSE 12165.70035 6331.949306 17622.98512 16761.62335 9641.79717 9841.048685 9969.652074 2974.799661 15961.57064 23467.28035 0.518411174 0.269820329 0.750959841 0.714255044 0.410861294 0.419351904 0.424832018 0.126763716 0.68016278 1 14.51836304 -13.52287875 0.14101065 2.975899914 0.243282779 0.397090765 0.189262294 35.63294872 0.348855025 19.56308478 0.481698459 3.00E-14 13.52287875 -2.732617135 IDLS(ph)PESSDR ddPTM_HeLa_CUDC101_4h_R1 1 IDLSPESSDR 10 0 O15062 O15062 ZBTB5 Zinc finger and BTB domain-containing protein 5 1 0 IDLS(0.999)PES(0.001)SDR 159.99 6.65E-05 13606000 3860.7 3246 3294.3 3070.2 3323.3 3466.9 2879.5 2568.6 3511.8 4059.6 TRUE FALSE FALSE 3408.154598 3346.005413 3472.399823 3195.416027 3078.14678 3400.774659 2990.56328 2860.999041 3367.042118 4035.453319 0.844553097 0.829152303 0.860473297 0.791835706 0.76277596 0.842724321 0.74107245 0.708965961 0.834365275 1 11.97851503 -13.52287875 0.087086282 1.722856787 0.598996369 0.38695687 0.059653971 33.85168355 0.22417652 4.580570058 0.422211033 3.00E-14 13.52287875 -1.123860418 TIQAPTQVPVVVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 TIQAPTQVPVVVSPR 15 0 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 0 TIQAPT(0.031)QVPVVVS(0.969)PR 81.992 0.017992 3827200 1160.9 1174.4 801.83 1126.5 1125 1198.8 897.14 883.2 1206 1199.1 TRUE FALSE FALSE 1024.821062 1210.581872 845.1793552 1172.443539 1042.010991 1175.934887 931.7429903 983.739918 1156.28817 1191.9677 0.859772511 1.015616339 0.709062297 0.983620227 0.874193983 0.986549289 0.781684764 0.82530753 0.970066697 1 10.21912943 -13.52287875 0.255236459 1.805923595 0.865763228 0.17952478 0.091065663 52.95138244 0.703306396 21.53352222 0.048641327 3.00E-14 13.52287875 -0.940160366 KAPAQK(ac)VPAQK ddPTM_HeLa_CUDC101_4h_R1 1 KAPAQKVPAQK 11 2 P50914 P50914 RPL14 60S ribosomal protein L14 0 1 KAPAQK(1)VPAQK 125.74 5.62E-05 0 6560.9 7280.8 9901.9 10209 9282.7 8524.8 8344 8647.6 3738.2 4116.5 FALSE TRUE FALSE 5791.841248 7505.112818 10437.22667 10625.36715 8597.933715 8362.203643 8665.830875 9632.007829 3584.109814 4092.014875 1.415400829 1.834087374 2.550632631 2.596610098 2.101149184 2.043541849 2.117741782 2.353854549 0.87587898 1 11.99859567 -7.254748452 1.722694217 1.158719552 2.278086467 0.861344842 0.214548384 0.099186463 0.557956068 0.043513644 0.051748825 5.56E-08 7.254748452 1.119366916 up S(ph)PPSYSVLYPSSDPK ddPTM_HeLa_CUDC101_4h_R1 2 SPPSYSVLYPSSDPK 15 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(0.992)PPS(0.008)YSVLYPSSDPK;S(0.996)PPS(0.004)YSVLYPSSDPK ; 146.27 0.00030155 69676000 8718.4 7812.4 7445 7337.7 9035.5 8407.5 7521.2 6032.3 8666.5 8557 TRUE FALSE FALSE 7696.442368 8053.090784 7847.49922 7636.963122 8368.969166 8247.140945 7811.295203 6718.992649 8309.263202 8506.102583 0.904814196 0.94674273 0.92257284 0.897821658 0.983878231 0.969555782 0.9183166 0.789902612 0.97685904 1 13.05428254 -13.52287875 0.261711773 1.55654114 0.911019663 0.252854386 0.049895812 47.01905319 0.627874335 13.5827483 0.027175061 3.00E-14 13.52287875 -0.645521476 CPS(ph)PTMSLPSSWK ddPTM_HeLa_CUDC101_4h_R1 2 CPSPTMSLPSSWK 13 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 CPS(0.533)PT(0.12)MS(0.342)LPS(0.004)S(0.002)WK;CPS(0.812)PT(0.187)MS(0.001)LPSSWK ; 164.88 2.56E-05 193700000 6083.4 4979.7 4855 5196.6 5889.6 5552.6 5198.2 5187.2 5903.8 4653.5 TRUE FALSE FALSE 5370.313074 5133.118655 5117.475986 5408.53981 5455.135942 5446.693406 5398.696315 5777.689881 5660.442865 4625.820775 1.160942746 1.109666566 1.106284967 1.16920652 1.179279572 1.177454482 1.167078574 1.249008589 1.223662381 1 12.17549366 -13.52287875 0.153339145 0.371397086 1.222208264 0 0.075363214 19.45050247 0.201899558 3.679026213 0.068248477 3.00E-14 13.52287875 0.850811178 (ac)VNPTVFFDIAVDGEPLGR ddPTM_HeLa_CUDC101_4h_R1 1 VNPTVFFDIAVDGEPLGR 18 0 P62937;F8WE65;C9J5S7;E5RIZ5 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 96.866 0.00029581 7081200 137.25 292.3 287.58 275.55 176.32 176.11 149.06 165.63 370.44 815.13 FALSE FALSE TRUE 121.1617631 301.3054165 303.1274447 286.78812 163.3132249 172.7509952 154.8092941 184.4846497 355.1703064 810.2815705 0.149530444 0.371852733 0.374101369 0.353936373 0.201551202 0.213198722 0.191056171 0.227679681 0.438329489 1 9.662279517 -9.346073053 0.760389029 1.072735804 0.252659034 0.356804849 0.188510674 0.181914588 0.161108809 0.095930051 0.017957073 4.51E-10 9.346073053 -0.82007677 (ac)VSVINTVDTSHEDMIHDAQMDYYGTR ddPTM_HeLa_CUDC101_4h_R1 2 VSVINTVDTSHEDMIHDAQMDYYGTR 26 0 P55735 P55735 SEC13 Protein SEC13 homolog 0 0 ; ; 72.317 1.31E-05 20958700 726.83 619.33 395.06 527.76 740.88 564.51 550.87 602.67 539.69 652.6 FALSE FALSE TRUE 641.6320892 638.4108232 416.4181386 549.284334 686.2267584 553.7429123 572.1172404 671.2755167 517.4437498 648.7183062 0.989076589 0.984111003 0.64190903 0.84672242 1.057819321 0.853595323 0.881919371 1.034771965 0.797640123 1 9.341448341 -6.960507638 24.99987829 0.994408007 0.884012067 0 0.123551106 191.4721242 121207.3406 0.017030493 0.022382435 1.10E-07 6.960507638 -0.11039594 KPLAAPGDGEGLGQTAQPS(ph)PPAR ddPTM_HeLa_CUDC101_4h_R1 2 KPLAAPGDGEGLGQTAQPSPPAR 23 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 KPLAAPGDGEGLGQTAQPS(1)PPAR;KPLAAPGDGEGLGQT(0.011)AQPS(0.989)PPAR ; 170.93 4.23E-10 33304000 4145.1 4135.3 3713.4 3563.4 4107.6 4094 3308.9 2968.9 4636.8 4606.3 TRUE FALSE FALSE 3659.217662 4262.703691 3914.157636 3708.730854 3804.590531 4015.913771 3436.525381 3306.867575 4445.669141 4578.901523 0.799147491 0.93094461 0.854824594 0.809960825 0.830895906 0.877047421 0.750513057 0.722196701 0.970902982 1 12.16078582 -13.52287875 0.197426708 1.83065209 0.783690847 0.640392477 0.051931186 26.18833651 0.315883775 8.408656883 0.059736402 3.00E-14 13.52287875 -1.046961243 AGAAAGDS(ph)DEESRADDK ddPTM_HeLa_CUDC101_4h_R1 4 AGAAAGDSDEESRADDK 17 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 AGAAAGDS(1)DEESRADDK;AGAAAGDS(1)DEESRADDK;AGAAAGDS(0.992)DEES(0.008)RADDK;AGAAAGDS(1)DEESRADDK ;;; 125.67 0.00016316 89368900 9953.1 8453.65 8206.22 8396.57 7497.56 8094.84 7316.06 6370.39 8876 10964.6 TRUE FALSE FALSE 8786.412706 8714.096936 8649.873076 8739.018418 6944.479936 7940.444414 7598.242885 7095.569448 8510.127523 10899.38207 0.806138609 0.799503759 0.793611328 0.801790263 0.637144371 0.728522439 0.697126024 0.65100658 0.780789908 1 13.41195872 -13.52287875 0.079865127 1.968277526 0.439027062 0.374665865 0.077318848 34.37278393 0.210743302 5.854077502 0.650579645 3.00E-14 13.52287875 -1.529250464 EDPGSGVRVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 EDPGSGVRVSPK 12 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 EDPGS(0.002)GVRVS(0.998)PK;EDPGS(0.001)GVRVS(0.999)PK ; 92.866 0.0099719 67838000 15684.4 14256.6 14029.7 13395.2 13961.1 14603.7 14040.4 14894.7 14454.3 12257.1 TRUE FALSE FALSE 13845.89841 14695.82895 14788.18802 13941.51415 12931.21747 14325.15875 14581.94293 16590.25244 13858.48764 12184.19422 1.136381951 1.206138763 1.213718999 1.144229475 1.061310845 1.175716546 1.196791734 1.361620813 1.137415194 1 13.57272322 -13.52287875 0.067755089 0.309795728 1.444309639 0.289543479 0.077164899 134.2308571 0.708265049 14.80295642 2.263185035 3.00E-14 13.52287875 1.134513912 APEAAVS(ph)EDGKSDDELLSSK ddPTM_HeLa_CUDC101_4h_R1 1 APEAAVSEDGKSDDELLSSK 20 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 APEAAVS(0.673)EDGKS(0.298)DDELLS(0.02)S(0.008)K 57.496 0.016968 80229000 1822.3 1662.7 1753.6 1812.2 1669.8 1758 1669.1 1141.1 2477.9 2113.2 TRUE FALSE FALSE 1608.692756 1713.925816 1848.40492 1886.109349 1546.622181 1724.469079 1733.477746 1270.998212 2375.759913 2100.630592 0.765814209 0.815910147 0.879928592 0.897877692 0.736265665 0.820929242 0.825217795 0.605055556 1.130974633 1 11.03660676 -13.52287875 0.244665492 2.264745303 0.77106089 0.611132742 0.085326954 28.55723076 0.375194021 17.42307622 0.04811482 3.00E-14 13.52287875 -1.493684412 EIEPNYESPS(ph)SNNQDKDSSQASK ddPTM_HeLa_CUDC101_4h_R1 1 EIEPNYESPSSNNQDKDSSQASK 23 1 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 EIEPNY(0.001)ESPS(0.499)S(0.499)NNQDKDSSQASK 133.98 9.25E-08 11837000 1681.2 1685.1 1200.3 1474.9 1469 1344 1016.9 1157.1 1510 2001.4 TRUE FALSE FALSE 1484.132285 1737.015934 1265.191849 1535.052797 1360.634797 1318.365439 1056.122174 1288.819587 1447.757161 1989.495584 0.745984207 0.873093636 0.635935993 0.771578891 0.683909433 0.662663164 0.530849217 0.647812238 0.727700616 1 10.95818698 -13.52287875 0.079534741 2.12470331 0.334670912 0.301449404 0.104806609 52.30303177 0.319482404 10.38913306 1.164562304 3.00E-14 13.52287875 -1.790032398 TAADVVS(ph)PGANSVDSR ddPTM_HeLa_CUDC101_4h_R1 1 TAADVVSPGANSVDSR 16 0 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 TAADVVS(0.995)PGANS(0.005)VDSR 195.28 3.41E-16 19952000 3809.9 3239.5 3408.2 3089.3 3454.3 3496.7 3127.4 2896.7 3597.3 3633 TRUE FALSE FALSE 3363.309297 3339.305155 3592.457601 3215.295007 3199.483171 3430.006273 3248.024866 3226.448619 3449.017771 3611.390754 0.931305839 0.924659053 0.994757379 0.89032044 0.885942117 0.949774341 0.899383392 0.893408894 0.955038656 1 11.81833881 -13.52287875 0.120478999 1.278076281 0.877094909 0.361197529 0.031843005 49.90233972 0.433842685 3.354540338 0.13438354 3.00E-14 13.52287875 -0.400981372 SLSSS(ph)PDKR ddPTM_HeLa_CUDC101_4h_R1 1 SLSSSPDKR 9 1 Q9BVI0;Q5JWZ0;Q5JXL1;B0QYY0;Q9BVI0-2 Q9BVI0 PHF20 PHD finger protein 20 1 0 SLS(0.005)S(0.029)S(0.966)PDKR 89.827 0.002209 0 3494.7 1683.6 3849.6 3935.2 2008.9 2398.3 2606.4 1397.6 3724.4 4701.2 TRUE FALSE FALSE 3085.056564 1735.46972 4057.72102 4095.694465 1860.707449 2352.556423 2706.929721 1556.697135 3570.878656 4673.237053 0.660154092 0.371363511 0.868289148 0.876414874 0.398162436 0.503410462 0.579240832 0.33310896 0.764112459 1 12.19020651 -13.52287875 0.096316019 2.45538535 0.232992829 0.341552878 0.18151598 78.83177585 0.569852195 23.22538605 1.69151823 3.00E-14 13.52287875 -2.222392521 TPQNVPAS(ph)PGGDR ddPTM_HeLa_CUDC101_4h_R1 1 TPQNVPASPGGDR 13 0 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 0 TPQNVPAS(1)PGGDR 103.6 0.0072464 18605000 2563.4 2009.2 2710.2 2520.6 2197.4 2057.3 1892.4 1454.9 2504.2 3050.1 TRUE FALSE FALSE 2262.922138 2071.101071 2856.72161 2623.400963 2035.30218 2018.06043 1965.390502 1620.519935 2400.975816 3031.95787 0.746356722 0.68309032 0.942203597 0.865249807 0.671283134 0.665596462 0.648224872 0.534479701 0.791889571 1 11.56603399 -13.52287875 0.044987394 2.303032968 4.72E-13 0.409739423 0.10558336 271.8818667 0.972880814 46.2952534 13.10929572 3.00E-14 13.52287875 -2.303032968 DSS(ph)PVGLVEEAGSR ddPTM_HeLa_CUDC101_4h_R1 1 DSSPVGLVEEAGSR 14 0 Q6ICB4 Q6ICB4 FAM109B Sesquipedalian-2 1 0 DS(0.181)S(0.818)PVGLVEEAGSR 98.253 0.0086581 4297200 1606.9 1757.7 1251.9 1468.9 1571.7 1307 1422.3 1315.7 1317.2 1687.7 TRUE FALSE FALSE 1418.541618 1811.852654 1319.581501 1528.808091 1455.758822 1282.071153 1477.158587 1465.47397 1262.904458 1677.661485 0.845546989 1.079987035 0.786560049 0.911273284 0.867730967 0.764201338 0.880486678 0.873521853 0.752776689 1 10.71223593 -13.52287875 0.213078094 1.64938139 0.848358249 0 0.110245279 48.14562679 0.601800485 13.08317147 0.067353383 3.00E-14 13.52287875 -0.801023141 AAAPAPEEEMDECEQALAAEPK ddPTM_HeLa_CUDC101_4h_R1 2 AAAPAPEEEMDECEQALAAEPK 22 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 ; ; 91.637 0.00036197 9596300 8518.3 7738.1 7961.6 7624 7946.8 8014.8 7475.8 7239 8690.7 7249.5 FALSE FALSE TRUE 7519.797787 7976.501689 8392.028179 7934.939674 7360.580396 7861.931044 7764.14411 8063.058499 8332.465668 7206.379652 1.04349176 1.106866703 1.164527625 1.101099312 1.02139781 1.090968201 1.077398706 1.11887784 1.156262377 1 12.81505894 -7.574585641 2.013688592 1.015483296 1.095653915 0 0.056460741 0.192584606 1.592059531 0.007355025 0.007755757 2.66E-08 7.574585641 0.08017062 VAGITGL ddPTM_HeLa_CUDC101_4h_R1 2 VAGITGL 7 0 Q92918 Q92918 MAP4K1 Mitogen-activated protein kinase kinase kinase kinase 1 0 0 ; ; 78.166 0.015191 628250000 6960.6 14986.5 23780 16214.4 17570.3 17706.1 15417.7 15509.4 7036.1 7771.2 FALSE FALSE TRUE 6144.68902 15448.2163 25065.61873 16875.69332 16274.17397 17368.38564 16012.36585 17274.9274 6746.06898 7724.976557 0.795431413 1.999775169 3.244750136 2.184562399 2.106695581 2.248341534 2.072804459 2.236243344 0.873280188 1 12.91531484 -7.176881748 4.470875576 0.903187088 2.332227464 0.80288102 0.322759868 0.06823472 2.46554249 0.054722096 0.067120576 6.65E-08 7.176881748 1.429040376 up AAASK(ac)LGEFAK ddPTM_HeLa_CUDC101_4h_R1 2 AAASKLGEFAK 11 1 C9J9C1;P30153;B3KQV6;P30154-4;P30154;P30154-3;P30154-2 C9J9C1 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform 0 1 ; AAASK(1)LGEFAK;AAASK(1)LGEFAK 148.28 0.00013736 7823400 3430.2 3688 3725.2 3068.8 6871.1 3734.5 2560.9 1220.02 5865.8 4016 FALSE TRUE FALSE 3028.117156 3801.622909 3926.59558 3193.958928 6364.232642 3663.270635 2659.674771 1358.902145 5624.009241 3992.112653 0.758524976 0.952283475 0.983588371 0.800067334 1.594201666 0.917627069 0.666232394 0.340396743 1.408780195 1 11.96293672 -4.48760397 2.713744375 0.940848214 0.341595496 0.380785532 0.265784877 0.243618531 3.095519011 0.032434588 0.256248224 3.25E-05 4.48760397 -0.599252719 PAGPAGDEPAESPSETPGPS(ph)PAGPTRDEPAK ddPTM_HeLa_CUDC101_4h_R1 1 PAGPAGDEPAESPSETPGPSPAGPTRDEPAK 31 1 Q9NZT2-2;Q9NZT2;A0A0A0MRN5 Q9NZT2-2 OGFR Opioid growth factor receptor 1 0 PAGPAGDEPAES(0.267)PS(0.138)ET(0.029)PGPS(0.565)PAGPT(0.001)RDEPAK 86.946 1.49E-07 6809100 546.22 304.73 474.69 472.77 549.39 483.99 383.3 367.56 410.28 519.96 TRUE FALSE FALSE 482.1929196 314.1183701 500.3531773 492.0516041 508.8625942 474.7586971 398.0840094 409.4015447 393.3680847 516.8672548 0.932914428 0.607735095 0.968049674 0.951988348 0.984513121 0.918531195 0.770186166 0.792082572 0.761062112 1 9.013649996 -13.52287875 0.092830035 1.467104745 0.760400673 0 0.135241255 181.0637774 1.267914344 16.36473362 1.302134292 3.00E-14 13.52287875 -0.706704073 TPS(ph)PGPVESK ddPTM_HeLa_CUDC101_4h_R1 1 TPSPGPVESK 10 0 Q5T0W9 Q5T0W9 FAM83B Protein FAM83B 1 0 T(0.126)PS(0.874)PGPVESK 110.93 0.0080317 41030000 2634 1733.4 2337.1 2272.8 2511.1 2317 1715.9 1816.5 2576.4 2871.6 TRUE FALSE FALSE 2325.246513 1786.803999 2463.450695 2365.494608 2325.861156 2272.807085 1782.082838 2023.283017 2470.199702 2854.519595 0.814584183 0.625956116 0.8630001 0.828683962 0.814799506 0.796213517 0.624302191 0.708799835 0.865364423 1 11.47903225 -13.52287875 0.136112417 1.886177055 0.65913177 0.341132026 0.088416066 39.10104473 0.373082056 9.245496551 0.255235974 3.00E-14 13.52287875 -1.227045285 AAATPAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AAATPAKK 8 1 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 ; AAATPAK(1)K;AAATPAK(1)K 107.29 0.0064646 19732100 17028.2 4782.9 21661 34559 14537.3 15459.1 19290.5 5845.3 5357 4454.6 FALSE TRUE FALSE 15032.18021 4930.25548 22832.05918 35968.4654 13464.91234 15164.24342 20034.54105 6510.705324 5136.182193 4428.103841 3.394721702 1.113401053 5.156170677 8.122769178 3.040785136 3.424545577 4.52440633 1.470314509 1.159905544 1 12.11247334 -8.546606239 0.550875928 0.953775042 4.076843684 0.264812654 1.844156263 0.963271454 0.588271773 1.412909186 0.527129976 2.84E-09 8.546606239 3.123068642 MFGT(ph)ES(ph)SLSMFLNTLTPK ddPTM_HeLa_CUDC101_4h_R1 1 MFGTESSLSMFLNTLTPK 18 0 C9JRW1;G3XAH9;B7Z4L1 C9JRW1 ST7 2 0 MFGT(0.994)ES(0.985)S(0.021)LSMFLNTLTPK 61.186 0.022719 4943700 2193.6 2427.1 2082.9 1908.3 2459 2289.5 1665.1 1520.5 2658.9 2858.6 TRUE FALSE FALSE 1936.469533 2501.876074 2195.507874 1986.128722 2277.604469 2245.831602 1729.323465 1693.587574 2549.299017 2841.59692 0.68147228 0.880447208 0.772631705 0.698948084 0.801522712 0.79034137 0.608574514 0.595998525 0.897136043 1 11.47248621 -13.52287875 0.239188193 2.630837353 0.690956585 0.519287032 0.08543039 24.14627635 0.31511665 18.55604737 0.056947309 3.00E-14 13.52287875 -1.939880768 EVQAEQPSSSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 5 EVQAEQPSSSSPR 13 0 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 EVQAEQPSSS(0.029)S(0.971)PR;EVQAEQPSSS(0.008)S(0.992)PR;EVQAEQPS(0.001)S(0.011)S(0.254)S(0.734)PR;EVQAEQPSSS(0.005)S(0.995)PR;EVQAEQPS(0.005)S(0.036)S(0.292)S(0.667)PR ;;;; 231.17 4.08E-43 539574000 13723.15 12235.97 11940.94 12115.54 12802.81 12091.93 11355.42 10839.76 13817 13432.01 TRUE FALSE FALSE 12114.54316 12612.94573 12586.50334 12609.66409 11858.37221 11861.29658 11793.40235 12073.71446 13247.45741 13352.11581 0.907312619 0.944640229 0.942659839 0.944394452 0.888126825 0.888345844 0.88326094 0.904254774 0.992161662 1 13.70478075 -13.52287875 0.17196942 1.363488491 0.886825112 0.76260027 0.019607296 23.75276711 0.265378147 2.904629889 0.035565954 3.00E-14 13.52287875 -0.476663378 QQS(ph)PQEPK ddPTM_HeLa_CUDC101_4h_R1 3 QQSPQEPK 8 0 Q9UHB6-4;Q9UHB6-5;Q9UHB6;F8VQE1;Q9UHB6-2;F8VS07;Q9UHB6-3 Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 1 0 QQS(1)PQEPK;QQS(1)PQEPK;QQS(1)PQEPK ;; 96.171 0.022349 139922000 22432.1 8209.3 21348.2 22494.2 12519.3 13100.7 14731.7 6260 22647.2 30914.7 TRUE FALSE FALSE 19802.64324 8462.218803 22502.34827 23411.6107 11595.77618 12850.82597 15299.9066 6972.613096 21713.67283 30730.81799 0.644390372 0.275365882 0.732240459 0.761828426 0.377333795 0.418173899 0.497868511 0.226893183 0.706576468 1 14.90739855 -13.52287875 0.089456734 2.802625632 0.027176038 0.403068148 0.179831717 66.45084023 0.450563111 22.76961728 1.97482475 3.00E-14 13.52287875 -2.775449594 AADAEAEVASLNRR ddPTM_HeLa_CUDC101_4h_R1 2 AADAEAEVASLNRR 14 1 J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753 J3KN67 TPM3 Tropomyosin alpha-3 chain 0 0 ; ; 139.48 3.40E-05 16323000 2965.8 3378.3 3205.5 3110.5 3756.8 3159.5 3045.7 3842.6 3388.3 2757.3 FALSE FALSE TRUE 2618.15342 3482.381419 3378.799026 3237.359635 3479.668349 3099.237802 3163.173669 4280.026052 3248.63284 2740.899457 0.955216877 1.27052505 1.232733662 1.181130386 1.269535203 1.130737501 1.154064102 1.561540698 1.185243345 1 11.42043369 -7.261691141 24.99452516 0.978852411 1.244961568 0.31380434 0.130620141 11.85787985 1177218.5 0.017965579 0.021232493 5.47E-08 7.261691141 0.266109158 AADCEVEQWDSDEPIPAK ddPTM_HeLa_CUDC101_4h_R1 1 AADCEVEQWDSDEPIPAK 18 0 U3KQ56;Q9UBQ7 U3KQ56 GRHPR Glyoxylate reductase/hydroxypyruvate reductase 0 0 133.88 0.00038753 8182500 1230.4 1102.5 729.19 1006.6 1080.2 878.98 983.26 951.56 1132.1 889.3 FALSE FALSE TRUE 1086.174377 1136.466718 768.6122171 1047.653499 1000.515798 862.214921 1021.184668 1059.881744 1085.434359 884.010404 1.228689586 1.285580705 0.869460601 1.185114444 1.131791881 0.975344766 1.15517268 1.198947138 1.227852471 1 9.787919539 -9.621448071 1.465484683 1.000710103 1.138487951 0 0.135562058 0.61170825 2.378728035 0.080824443 0.018922478 2.39E-10 9.621448071 0.137777847 AADEEAFEDNSEEYIR ddPTM_HeLa_CUDC101_4h_R1 4 AADEEAFEDNSEEYIR 16 0 P55060-4;P55060-3;P55060 P55060-4 CSE1L Exportin-2 0 0 ;;; ;;; 280.23 3.51E-86 54040700 4652.2 3543.9 3339.09 3521.23 4007.25 4007.36 3362.06 2644.72 3717.49 4070.22 FALSE FALSE TRUE 4106.876168 3653.083358 3519.611306 3664.840979 3711.643151 3930.926285 3491.73578 2945.784234 3564.253489 4046.01015 1.015043466 0.902885367 0.869896806 0.905791346 0.917358833 0.971556209 0.863007173 0.72807139 0.880930437 1 11.98228422 -1.66466664 0.238171829 1.016898097 6.62E-14 0.287741589 0.065697785 18.09200576 0.294778553 0.03616065 6.87027311 0.021643792 1.66466664 -1.016898097 AADEEAFEDNSEEYIRR ddPTM_HeLa_CUDC101_4h_R1 2 AADEEAFEDNSEEYIRR 17 1 P55060-4;P55060-3;P55060 P55060-4 CSE1L Exportin-2 0 0 ; ; 184.51 6.84E-11 104360000 3799.8 2910.5 2690.7 2884.8 3771.7 3307.6 3088.6 3626.8 2518.3 2587.2 FALSE FALSE TRUE 3354.393204 3000.169055 2836.167381 3002.454613 3493.469205 3244.513041 3207.728337 4039.660252 2414.494608 2571.811219 1.304292158 1.166558818 1.102789878 1.167447513 1.358369222 1.261567341 1.247264306 1.570745248 0.93883042 1 11.32856903 -13.52287875 0.056032943 1.33E-13 1.755609157 0.594674459 0.109881434 234.7691043 1.036666634 34.90010404 7.309800501 3.00E-14 13.52287875 1.755609157 GVEPS(ph)PSPIKPGDIK ddPTM_HeLa_CUDC101_4h_R1 2 GVEPSPSPIKPGDIK 15 1 Q92890;Q92890-1;Q92890-3;C9JNP9 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 0 GVEPS(0.644)PS(0.356)PIKPGDIK;GVEPS(0.873)PS(0.127)PIKPGDIK ; 116 0.0070595 16244400 4949.3 5276.1 4374 4053.3 4081.4 3817.3 3587.2 2559.8 4203.5 6511.3 TRUE FALSE FALSE 4369.150557 5438.650387 4610.471671 4218.611094 3780.323253 3744.491363 3725.559506 2851.197285 4030.229951 6472.570498 0.675025565 0.840261282 0.712309224 0.6517675 0.584052851 0.578516891 0.575591955 0.440504632 0.622662967 1 12.66012306 -13.52287875 0.061536134 2.451565122 0.010076441 0.286443177 0.125172219 74.70393883 0.360345188 16.49017925 2.977262003 3.00E-14 13.52287875 -2.441488682 VSASS(ph)PTTK ddPTM_HeLa_CUDC101_4h_R1 1 VSASSPTTK 9 0 Q9BVI0;Q5JWZ0;Q5JXL1 Q9BVI0 PHF20 PHD finger protein 20 1 0 VSAS(0.045)S(0.934)PT(0.013)T(0.008)K 131.42 0.0030143 62380000 9036.2 5276.8 8561.1 9522.1 7050.8 6458.5 6643.8 3722.9 10092 10844 TRUE FALSE FALSE 7976.990334 5439.371953 9023.938962 9910.452396 6530.676531 6335.314873 6900.053592 4146.699888 9676.003488 10779.49941 0.740014915 0.504603391 0.837138964 0.91937965 0.605842283 0.587718839 0.640108908 0.384683901 0.897630133 1 13.39600256 -13.52287875 0.056261204 2.439537577 1.07E-13 0.512909767 0.132215573 191.9804892 0.850999611 39.76629993 8.277691807 3.00E-14 13.52287875 -2.439537577 PEPVK(ac)SAPVPK ddPTM_HeLa_CUDC101_4h_R1 2 PEPVKSAPVPK 11 1 Q99879 Q99879 HIST1H2BM Histone H2B type 1-M 0 1 ; PEPVK(1)SAPVPK;PEPVK(1)SAPVPK 172.56 0.00018587 91470000 7812.3 11431.8 14822.7 20838.7 16729.5 15751.7 15496.6 13539.7 3156.1 3390.9 FALSE TRUE FALSE 6896.554037 11784.00021 15624.06 21688.59226 15495.39811 15451.26257 16094.30905 15081.00472 3026.004222 3370.730776 2.046011531 3.495977873 4.635214449 6.434388772 4.597044126 4.583950364 4.774723976 4.474105386 0.897729431 1 11.71884569 -7.156694122 1.535961618 1.390810244 4.974006701 0.887856367 0.57625861 0.088958809 0.401427964 0.116436916 0.144081252 6.97E-08 7.156694122 3.583196456 up AADK(ac)LIQNLDANHDGR ddPTM_HeLa_CUDC101_4h_R1 2 AADKLIQNLDANHDGR 16 1 Q96FQ6 Q96FQ6 S100A16 Protein S100-A16 0 1 ; AADK(1)LIQNLDANHDGR;AADK(1)LIQNLDANHDGR 132.4 0.0059887 2143080 1318.27 916.18 935.48 972 1440.15 1266.56 1247.35 1346.47 1072.86 1022.83 FALSE TRUE FALSE 1163.744389 944.4064199 986.0548785 1011.642361 1333.913004 1242.402478 1295.460707 1499.746702 1028.636257 1016.746162 1.144577116 0.928851719 0.969814213 0.994980261 1.311942994 1.221939679 1.27412402 1.475045354 1.011694261 1 9.989743829 -5.081089648 0.956039518 1.047540722 1.433890971 0.719044032 0.091306833 0.39921799 0.544538271 0.016327145 0.11826715 8.30E-06 5.081089648 0.386350249 HIKEEPLS(ph)EEEPCTST(ph)AIASPEK ddPTM_HeLa_CUDC101_4h_R1 1 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 HIKEEPLS(0.999)EEEPCT(0.331)S(0.305)T(0.332)AIAS(0.033)PEK 67.095 0.0051609 44303000 3496.4 3005 2953.7 3082 3305.1 3336.6 3013.8 2917.2 3242.1 2974.9 TRUE FALSE FALSE 3086.557292 3097.580488 3113.385956 3207.697282 3061.289358 3272.959914 3130.043276 3249.282256 3108.459266 2957.205162 1.043741344 1.047468917 1.052813648 1.084705695 1.035196812 1.106774719 1.05844644 1.098767951 1.051147653 1 11.53001862 -13.52287875 0.04946419 0.686242931 1.222984843 0.348973296 0.024241285 146.1874146 0.573129613 6.133166646 1.536073964 3.00E-14 13.52287875 0.536741912 T(ph)LQQLY(ph)EAY(ph)AS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 TLQQLYEAYASK 12 0 Q8WZ79 Q8WZ79 DNASE2B Deoxyribonuclease-2-beta 4 0 T(1)LQQLY(1)EAY(1)AS(1)K 65.278 0.0026398 0 1264.5 1237.6 1049.3 1157.5 1131.4 1226.7 988.4 1060.9 1198.7 1260.6 TRUE FALSE FALSE 1116.277227 1275.728989 1106.028332 1204.707853 1047.938876 1203.302741 1026.522919 1181.668568 1149.289079 1253.101895 0.890811219 1.018056867 0.882632399 0.961380601 0.836275869 0.960259294 0.819185513 0.942994797 0.917155327 1 10.29128802 -13.52287875 0.235499636 1.521706896 0.89733318 0.013687561 0.06219906 45.01874341 0.5846033 10.90413755 0.035949226 3.00E-14 13.52287875 -0.624373717 ANS(ph)FVGTAQYVSPELLTEK ddPTM_HeLa_CUDC101_4h_R1 1 ANSFVGTAQYVSPELLTEK 19 0 E9PER6;Q6A1A2;O15530-4;O15530-5;O15530;O15530-2 E9PER6 PDPK1;PDPK2P Putative 3-phosphoinositide-dependent protein kinase 2;3-phosphoinositide-dependent protein kinase 1 1 0 ANS(0.5)FVGT(0.5)AQYVSPELLTEK 361.7 0 0 23557 20727 19190 18792 21926 21197 20247 20828 19461 18902 TRUE FALSE FALSE 20795.68417 21365.5743 20227.46945 19558.41899 20308.56266 20792.70254 21027.93357 23198.97533 18658.80934 18789.57006 1.10676743 1.137097562 1.076526465 1.04091892 1.080842329 1.106608745 1.119127979 1.234673026 0.993040782 1 14.19764444 -13.52287875 0.018644111 1.01E-06 1.910549755 0.580617756 0.04331037 1960.256262 2.948688396 196.2919332 115.853556 3.00E-14 13.52287875 1.910548748 AADPPAENSSAPEAEQGGAE ddPTM_HeLa_CUDC101_4h_R1 2 AADPPAENSSAPEAEQGGAE 20 0 H0Y449;P67809 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 0 0 ; ; 199.13 1.19E-16 112292000 9065.8 7020.5 7822.1 8176.1 9109.8 8106.6 7610.2 8004.7 9224 8198.2 FALSE FALSE TRUE 8003.120667 7236.793284 8244.986387 8509.556698 8437.788203 7951.980112 7903.727963 8915.922692 8843.782816 8149.436742 0.982045867 0.888011468 1.011724693 1.044189552 1.035382993 0.975770518 0.9698496 1.094053856 1.085201726 1 12.99248463 -6.545709425 24.99747095 0.981918963 1.019732895 0.074502761 0.05531779 352.6894378 386160.2333 0.007084023 0.010018606 2.85E-07 6.545709425 0.037813931 LNFDMTAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 LNFDMTASPK 10 0 A0A087WVZ6;A0A087WYS3;H7C4X9;A0A087WV57;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-16;Q9ULU4-4;Q9ULU4-12;Q9ULU4-14;Q9ULU4-21;Q9ULU4-8;Q9ULU4-23;Q9ULU4-17;Q9ULU4-6;Q9ULU4-3;Q9ULU4-19;Q9ULU4-18;Q9ULU4-15 A0A087WVZ6 ZMYND8 Protein kinase C-binding protein 1 1 0 LNFDMT(0.002)AS(0.998)PK 113.52 0.0070572 29824000 2618.8 2360.5 2017.7 2172.5 2134 2197.9 1934.2 1388 1829.2 3568.7 TRUE FALSE FALSE 2311.828234 2433.224207 2126.782965 2261.10394 1976.579072 2155.978719 2008.802742 1546.00431 1753.799602 3547.473214 0.65168307 0.685903476 0.599520514 0.637384359 0.557179421 0.607750528 0.566262977 0.435804365 0.494379942 1 11.79257608 -13.52287875 0.147799965 2.55746421 0.444931378 0 0.166294606 10.40654526 0.10533032 4.67320431 0.098371453 3.00E-14 13.52287875 -2.112532832 S(ph)PGNLTEREELAGSLAR ddPTM_HeLa_CUDC101_4h_R1 1 SPGNLTEREELAGSLAR 17 1 Q9H0F6;Q9H0F6-2 Q9H0F6 SHARPIN Sharpin 1 0 S(0.988)PGNLT(0.012)EREELAGSLAR 92.236 0.0031896 0 1541.4 1144.3 1405 1375.1 1203.2 1666.4 1116.4 1086.4 1530.2 1495.1 TRUE FALSE FALSE 1360.719429 1179.554527 1480.95855 1431.182522 1114.442333 1634.616196 1159.459922 1210.071385 1467.124508 1486.207079 0.915565165 0.793667682 0.996468508 0.962976521 0.749856698 1.099857631 0.780146952 0.814201064 0.987160221 1 10.53741943 -13.52287875 0.08272017 1.379814637 0.778167413 0.154960869 0.103035993 226.8856179 1.435511271 15.68279267 1.618169213 3.00E-14 13.52287875 -0.601647224 DLHQGIEAAS(ph)DEEDLR ddPTM_HeLa_CUDC101_4h_R1 4 DLHQGIEAASDEEDLR 16 0 A0A0C4DGG1;Q9UKS6;E9PIY1 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 DLHQGIEAAS(1)DEEDLR;DLHQGIEAAS(1)DEEDLR;DLHQGIEAAS(1)DEEDLR;DLHQGIEAAS(1)DEEDLR ;;; 202.81 9.71E-17 41935500 6453.4 5520 5702 5486.53 6089.6 5580 4701.73 4620.09 6721.7 6836.4 TRUE FALSE FALSE 5696.942235 5690.064657 6010.267368 5710.294408 5640.38234 5473.570797 4883.077301 5146.022371 6444.628681 6795.736789 0.838311196 0.837299153 0.884417327 0.840275983 0.829988346 0.805441848 0.718550093 0.757242744 0.948334063 1 12.73041426 -13.52287875 0.083537659 1.652629226 0.618037044 0.831694243 0.032265232 45.12817988 0.28804039 5.411658826 0.546675045 3.00E-14 13.52287875 -1.034592182 S(ph)STPEEVK ddPTM_HeLa_CUDC101_4h_R1 1 SSTPEEVK 8 0 P23528;G3V1A4;E9PP50;E9PK25;E9PQB7;E9PLJ3;E9PS23 P23528 CFL1 Cofilin-1 1 0 S(0.989)S(0.01)TPEEVK 112.36 0.010516 15292000 3774.4 2737.2 3784.6 3635.1 3991.7 3057 3183.2 1832.6 4015.4 4916.4 TRUE FALSE FALSE 3331.970554 2821.529888 3989.206924 3783.35509 3697.240244 2998.692818 3305.97709 2041.215776 3849.883512 4887.157034 0.681780948 0.57733563 0.816263299 0.774142321 0.756521679 0.613586344 0.676462219 0.417669365 0.78775523 1 12.25477975 -13.52287875 0.174327485 2.384888995 0.583798573 0.335416296 0.121462249 28.96219519 0.326237793 13.61636583 0.158351742 3.00E-14 13.52287875 -1.801090422 APKPPTDGSTS(ph)PTSTPSEDQEALGK ddPTM_HeLa_CUDC101_4h_R1 1 APKPPTDGSTSPTSTPSEDQEALGK 25 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;S4R3G4;F8WBN2;F6SRV7;Q8NHM5-5 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 0 APKPPTDGS(0.042)T(0.302)S(0.584)PT(0.026)S(0.036)T(0.009)PSEDQEALGK 89.659 1.19E-05 27008000 2126.8 1700.5 2048.5 1867.8 1805.7 1968.3 1856.7 1402.9 1668.6 2194.4 TRUE FALSE FALSE 1877.499728 1752.890389 2159.248106 1943.976957 1672.497108 1930.757957 1928.313541 1562.600465 1599.819602 2181.347611 0.860706344 0.80358141 0.989868875 0.891181647 0.766726541 0.885121632 0.884001033 0.71634638 0.733408831 1 11.09100398 -13.52287875 0.148172081 1.550302463 0.798024036 0 0.107607176 49.41724477 0.50105375 7.92654604 0.165436849 3.00E-14 13.52287875 -0.752278427 QEPS(ph)PKPNNK ddPTM_HeLa_CUDC101_4h_R1 2 QEPSPKPNNK 10 1 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047;F5H5B7;F5H1W4;F5H2K8;F5H6P5;F5H6A8;F5GXA3;C9JM38;C9J286;C9J323;J3QT54 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 0 QEPS(1)PKPNNK;QEPS(1)PKPNNK ; 140.14 0.00032201 0 2525.7 678.22 2712.1 2635.4 1600.9 1054.52 1333.04 704.34 2869 3996.5 TRUE FALSE FALSE 2229.641275 699.1151543 2858.72433 2742.883003 1482.804796 1034.406788 1384.455799 784.5192186 2750.738606 3972.72864 0.561236741 0.175978582 0.719587112 0.690427978 0.37324593 0.260376905 0.348489898 0.197476166 0.69240536 1 11.95591454 -13.52287875 0.103709324 3.039473895 5.95E-11 0.463168644 0.189391751 49.69974054 0.382503313 21.57358712 1.30479897 3.00E-14 13.52287875 -3.039473895 AAAGEEETAAAGS(ph)PGRK ddPTM_HeLa_CUDC101_4h_R1 2 AAAGEEETAAAGSPGRK 17 1 Q9NS37;E9PIM0 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 1 0 AAAGEEETAAAGS(1)PGRK;AAAGEEETAAAGS(1)PGRK ; 96.391 0.0023385 67063000 8002.2 6234.1 7980.4 7197 6959.9 6505.4 6169.9 5891.3 9111.9 8568.9 TRUE FALSE FALSE 7064.194247 6426.165232 8411.844563 7490.524768 6446.482043 6381.320334 6407.87511 6561.941779 8736.303625 8517.931802 0.829332097 0.75442788 0.987545423 0.879383041 0.756813061 0.749163116 0.752280631 0.770367964 1.025636719 1 13.05628746 -13.52287875 0.10991344 1.651777683 0.683795607 0.624865809 0.066372061 58.32181195 0.470990161 8.566726316 0.444203875 3.00E-14 13.52287875 -0.967982075 FSS(ph)PTEELDYR ddPTM_HeLa_CUDC101_4h_R1 2 FSSPTEELDYR 11 0 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 FS(0.158)S(0.842)PTEELDYR;FS(0.24)S(0.683)PT(0.077)EELDYR ; 179.19 1.35E-07 6660800 3800.3 3545.4 3561.9 3518.4 3427.1 3672.2 3176.5 2720.5 3893.8 4144.1 TRUE FALSE FALSE 3354.834595 3654.629572 3754.467088 3661.89556 3174.289661 3602.158903 3299.018669 3030.190723 3733.295916 4119.450709 0.814388818 0.887164292 0.91139993 0.888928117 0.770561389 0.874426995 0.800839457 0.735581255 0.906260611 1 12.00823626 -13.52287875 0.20576444 1.802792063 0.803890436 0.401720402 0.057474485 26.50270939 0.326124594 8.574091221 0.051249294 3.00E-14 13.52287875 -0.998901627 KEES(ph)DEEETASK ddPTM_HeLa_CUDC101_4h_R1 1 KEESDEEETASK 12 1 Q9BY89;A0A1B0GVJ7;Q9BY89-2 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 KEES(0.999)DEEET(0.001)ASK 69.485 0.030481 44378000 3006.5 1420.2 3889.9 3428.8 2240.4 2262.9 2077.7 1237.1 3808.9 4773.1 TRUE FALSE FALSE 2654.082628 1463.954679 4100.19976 3568.641285 2075.130156 2219.738953 2157.837585 1377.926463 3651.89553 4744.709389 0.559377279 0.308544646 0.864162465 0.752130635 0.43735664 0.467834544 0.454788146 0.290413248 0.769677388 1 12.21210401 -13.52287875 0.154974224 2.849753383 0.360765922 0.414940896 0.175799848 35.93328231 0.375664526 20.14402688 0.360092278 3.00E-14 13.52287875 -2.488987461 AAEDDEDDDVDTK ddPTM_HeLa_CUDC101_4h_R1 8 AAEDDEDDDVDTK 13 0 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 0 ;;;;;;; ;;;;;;; 306.48 2.37E-142 5973488900 15091.86 20440.44 13923.08 14984.7 14478.59 13190.61 12324.17 12543.57 15205.01 17194 FALSE FALSE TRUE 13322.81505 21070.18573 14675.80382 15595.84084 13410.53326 12939.02109 12799.51737 13971.47931 14578.25305 17091.72932 0.779489003 1.232770852 0.85864944 0.91247881 0.784621205 0.757034051 0.748871991 0.817440941 0.852941957 1 14.06101075 -5.753547649 4.164280195 0.92002893 0.771307972 0.311550217 0.116223719 0.243756136 9.659716521 0.018865992 0.037298859 1.76E-06 5.753547649 -0.148720958 AAEDDEDDDVDTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AAEDDEDDDVDTKK 14 1 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 1 ; AAEDDEDDDVDTK(1)K;AAEDDEDDDVDTK(1)K 412.4 0 41846000 12123.2 9362.9 8488.8 7798.3 11720.4 10509 11271.8 10673.6 11822.9 11059.4 FALSE TRUE FALSE 10702.13687 9651.359851 8947.730205 8116.348381 10855.80944 10308.55833 11706.5571 11888.63948 11335.55506 10993.6182 0.973486316 0.877905679 0.813902215 0.738278175 0.987464659 0.937685678 1.064850251 1.081412804 1.031103214 1 13.42437866 -4.738342304 6.559199671 0.946482027 1.074979588 0.289766752 0.088463861 0.197186698 29.59397054 0.013748993 0.049971584 1.83E-05 4.738342304 0.12849756 AAEDDEDDDVDTKK ddPTM_HeLa_CUDC101_4h_R1 9 AAEDDEDDDVDTKK 14 1 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 0 ;;;;;;;; ;;;;;;;; 175.21 2.74E-07 2751259700 27984.8 25841 27011.3 27108.1 26687.1 24191.4 23942.8 24566.5 28805.7 29554 FALSE FALSE TRUE 24704.46417 26637.13058 28471.61258 28213.68549 24718.4458 23729.98935 24866.28182 27363.05106 27618.31685 29378.21149 0.840911101 0.906696808 0.969140432 0.960360895 0.841387019 0.807741116 0.846419185 0.931406293 0.940095242 1 14.84245895 -9.457219479 1.115282847 1.001955022 0.883557349 0.238454601 0.054621664 0.455459351 0.986192803 0.043080173 0.009972964 3.49E-10 9.457219479 -0.118397673 QMGPVT(ph)PT(ph)S(ph)RR ddPTM_HeLa_CUDC101_4h_R1 1 QMGPVTPTSRR 11 1 M0R2L7 M0R2L7 ITPKC 3 0 QMGPVT(1)PT(1)S(1)RR 69.345 0.037941 3662900 437.64 342.19 325.89 309.39 330.18 358.65 415.88 155.1 365.96 468.96 TRUE FALSE FALSE 386.3405026 352.7324683 343.5085992 322.0082615 305.8232792 351.8093488 431.9206309 172.7559571 350.8749739 466.1706051 0.828753462 0.75665961 0.736873144 0.690751965 0.656032954 0.754679392 0.926529099 0.370585265 0.752675029 1 8.864714226 -13.52287875 0.067584441 2.113114033 0.309991183 0.15116367 0.147508413 144.4099571 0.76019832 25.26129847 3.879715059 3.00E-14 13.52287875 -1.80312285 FELLPTPPLS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 FELLPTPPLSPSR 13 0 H0YBG3;A0A0B4J1R1;H0YBT0;A0A087WUS5;P01106;P01106-2;P04198 H0YBG3 MYC;MYCN Myc proto-oncogene protein;N-myc proto-oncogene protein 1 0 FELLPT(0.137)PPLS(0.848)PS(0.015)R 96.464 0.012018 5099300 4597.4 3270.4 2569.7 2145.9 2142.3 2242.1 2217.8 1518.6 3699.8 5134.1 TRUE FALSE FALSE 4058.499741 3371.157148 2708.625755 2233.419077 1984.266797 2199.335678 2303.341289 1691.471286 3547.292678 5103.562145 0.795228828 0.660549838 0.530732394 0.43761965 0.38880036 0.430941295 0.451320318 0.331429546 0.695062111 1 12.31728884 -7.142806151 0.614071613 0.965846848 0.374532183 0.787720911 0.092338365 0.084287934 0.069019384 0.013589096 0.017676386 7.20E-08 7.142806151 -0.591314664 down TTPS(ph)YVAFTDTER ddPTM_HeLa_CUDC101_4h_R1 2 TTPSYVAFTDTER 13 0 P11142;E9PKE3;P11142-2;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65;P54652;P17066;P48741;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;Q53FA3;P34931 P11142;P54652;P17066;A0A0G2JIW1;Q53FA3 HSPA8;HSPA2;HSPA6;HSPA7;HSPA1B;HSPA1A;HSPA1L Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 1 0 TT(0.011)PS(0.986)Y(0.001)VAFT(0.001)DT(0.001)ER;T(0.017)T(0.011)PS(0.971)YVAFTDTER ; 134.4 0.00094802 34232000 2619.4 2445.6 2072.6 2516.1 2835.1 2395.4 2216.4 1791.58 2488.8 2864 TRUE FALSE FALSE 2312.357903 2520.946037 2184.651025 2618.717434 2625.960321 2349.711736 2301.88729 1995.526225 2386.210611 2846.964801 0.812218649 0.885485496 0.767361446 0.919827823 0.922371896 0.82533923 0.808540833 0.70093112 0.838159506 1 11.47520894 -13.52287875 0.248177087 2.068965817 0.813135643 0 0.082018408 29.42314076 0.388087135 15.38673277 0.039731996 3.00E-14 13.52287875 -1.255830174 AAEEAFVNDIDESSPGTEWER ddPTM_HeLa_CUDC101_4h_R1 1 AAEEAFVNDIDESSPGTEWER 21 0 P09496-2;P09496-5 P09496-2 CLTA Clathrin light chain A 0 0 121.82 7.90E-07 2871800 425.4 337.53 247.38 319.41 474.3 347.68 284.61 386.9 513.58 588.44 FALSE FALSE TRUE 375.5352569 347.9288992 260.7541111 332.4369204 439.3118339 341.0485833 295.587503 430.9431321 492.410015 584.9399327 0.642006531 0.59481133 0.445779295 0.568326595 0.751037516 0.583048898 0.50532967 0.736730574 0.841812958 1 9.192144672 -8.881102709 0.672452669 1.011479754 0.592602261 0.607148258 0.099314115 0.300817762 0.247636873 0.067795921 0.020467622 1.31E-09 8.881102709 -0.418877493 AAEEEDEADPK ddPTM_HeLa_CUDC101_4h_R1 1 AAEEEDEADPK 11 0 P20962 P20962 PTMS Parathymosin 0 0 145.99 0.0056021 27922000 3370.7 2509.1 2975.4 2892.3 2683.6 2668.4 2390.4 1897.9 3351.6 3947.8 FALSE FALSE TRUE 2975.591656 2586.402397 3136.259124 3010.260496 2485.636174 2617.504716 2482.598529 2113.949264 3213.445629 3924.31831 0.758244215 0.659070491 0.799185712 0.767078575 0.633393109 0.666996026 0.632619052 0.538679357 0.81885448 1 11.93822635 -13.52287875 0.087864763 2.128471261 0.37695293 0.626372694 0.075386653 36.78157884 0.245495214 7.820993859 0.706605823 3.00E-14 13.52287875 -1.751518331 AAEEEDEADPK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 AAEEEDEADPKR 12 1 P20962 P20962 PTMS Parathymosin 0 1 ; AAEEEDEADPK(1)R;AAEEEDEADPK(1)R 183.85 9.96E-08 2233200 2507.5 1242.26 1332.1 1223.25 2507.7 2333.1 2420.7 2060.51 2300.5 1788.42 FALSE TRUE FALSE 2213.574651 1280.532558 1404.117355 1273.139422 2322.711967 2288.600005 2514.06721 2295.07013 2205.672416 1777.782398 1.245132505 0.720297692 0.78981396 0.716139064 1.306522086 1.287334157 1.41415913 1.290973593 1.24068751 1 10.79586303 -5.564062757 24.99958545 1.032478082 1.332118445 0.452843123 0.188804117 134.9778812 81934.09818 0.031378224 0.062756493 2.73E-06 5.564062757 0.299640363 AAEEEDEADPKR ddPTM_HeLa_CUDC101_4h_R1 3 AAEEEDEADPKR 12 1 P20962 P20962 PTMS Parathymosin 0 0 ;; ;; 109.39 0.0061763 252464000 10588.2 8926.9 10689.8 10203 10935.8 10077.6 9088.8 9402.3 10771.7 10350.1 FALSE FALSE TRUE 9347.067247 9201.927208 11267.72292 10619.12244 10129.08782 9885.38657 9439.358061 10472.61983 10327.68597 10288.53714 0.908493318 0.894386352 1.095172498 1.032131419 0.984502236 0.960815559 0.917463574 1.017892017 1.003805091 1 13.32875025 -3.735008946 7.737666683 0.966252444 6.818166548 0.010015617 0.05895235 44208.1732 11428.58208 0.008726119 4528087.275 0.000184073 3.735008946 5.851914105 YFQISQDEDESES(ph)ED ddPTM_HeLa_CUDC101_4h_R1 1 YFQISQDEDESESED 15 0 C9JYQ9;H0Y8C2;Q6P5R6 C9JYQ9 RPL22L1 60S ribosomal protein L22-like 1 1 0 YFQISQDEDES(0.082)ES(0.918)ED 80.737 0.019081 2854200 1330.3 1200.4 1391.6 1371.1 1314 1098.1 1019.6 1154.3 1390.5 1529.2 TRUE FALSE FALSE 1174.364251 1237.382901 1466.834105 1427.019384 1217.068838 1077.155572 1058.926314 1285.700846 1333.183001 1520.10425 0.772555073 0.814011869 0.964956255 0.938764156 0.80064827 0.708606381 0.696614271 0.84579781 0.877033928 1 10.56995455 -13.52287875 0.261789261 2.289135203 0.792505628 0.167815263 0.08981481 37.01665782 0.494335115 24.80214193 0.049550123 3.00E-14 13.52287875 -1.496629575 LVS(ph)PEPPPK ddPTM_HeLa_CUDC101_4h_R1 1 LVSPEPPPK 9 0 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0;Q9H4G0-4 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 LVS(1)PEPPPK 105.98 0.01222 18024000 3602 4043.2 3176.2 3147.7 3087.4 3059.4 3093.7 2930.7 3438.8 4291.3 TRUE FALSE FALSE 3179.77902 4167.7662 3347.914979 3276.076812 2859.648653 3001.047042 3213.025045 3264.319042 3297.051208 4265.775157 0.745416461 0.97702435 0.784831562 0.767990973 0.670370225 0.703517399 0.753210126 0.765234669 0.772907874 1 12.05859221 -13.52287875 0.195945089 2.094476474 0.716413676 0.041633157 0.100534375 26.92594124 0.32355032 11.26768494 0.082565614 3.00E-14 13.52287875 -1.378062797 AAEK(ac)RPAEDYVPR ddPTM_HeLa_CUDC101_4h_R1 2 AAEKRPAEDYVPR 13 2 Q969E4;Q5H9L2 Q969E4 TCEAL3;TCEAL5 Transcription elongation factor A protein-like 3;Transcription elongation factor A protein-like 5 0 1 ; AAEK(1)RPAEDYVPR;AAEK(1)RPAEDYVPR 96.059 0.026664 20718500 6705 7022.2 7093.7 6910.9 6937.3 5832.5 6007.2 5732.4 7104.5 8979.6 FALSE TRUE FALSE 5919.050064 7238.545659 7477.206879 7192.756373 6425.5492 5721.25478 6238.899716 6384.953245 6811.649503 8926.18894 0.663110551 0.810933502 0.837670693 0.805803733 0.719853595 0.640951566 0.698943273 0.715305635 0.763108371 1 13.12382863 -9.407849635 0.941493748 1.013270585 0.733161908 0.096685648 0.094529136 0.299430836 0.437296503 0.061167083 0.012860759 3.91E-10 9.407849635 -0.280108677 AAEK(ac)VSEAR ddPTM_HeLa_CUDC101_4h_R1 1 AAEKVSEAR 9 1 O75348 O75348 ATP6V1G1 V-type proton ATPase subunit G 1 0 1 AAEK(1)VSEAR 87.298 0.036164 0 497.97 251.54 367.88 401.84 262.45 357.42 253.81 391.91 280.44 239.19 FALSE TRUE FALSE 439.5987115 259.2896493 387.7687056 418.2287721 243.0895864 350.602809 263.5995367 436.5234502 268.8801445 237.7672872 1.848861198 1.0905186 1.63087492 1.758983656 1.022384489 1.474562851 1.108645095 1.835927285 1.130854238 1 7.893406428 -9.637530322 1.47127858 1.000703236 1.506823105 0.220490906 0.297311588 0.430015033 1.676640434 0.211111759 0.048253451 2.30E-10 9.637530322 0.506119869 AAEK(ac)VSR ddPTM_HeLa_CUDC101_4h_R1 1 AAEKVSR 7 1 Q14676;Q14676-3;Q14676-2;Q14676-4;H0Y6Z8 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 0 1 AAEK(1)VSR 123.98 0.0025301 2142700 488.76 187.06 918.03 938.52 360.45 433.43 611.97 165.85 667.98 857.18 FALSE TRUE FALSE 431.4682937 192.8230969 967.6614787 976.7969022 333.8603216 425.1630449 635.5738879 184.7296936 640.4455817 852.0814552 0.506369774 0.226296554 1.135644336 1.146365639 0.391817378 0.498969954 0.745907429 0.216798162 0.751624833 1 9.734847542 -9.373753035 1.09861319 1.000009084 0.616782016 0.082562011 0.317691591 0.735330472 1.588279606 0.215214872 0.055598529 4.23E-10 9.373753035 -0.383227068 SLSGS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 2 SLSGSPLK 8 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 S(0.004)LS(0.143)GS(0.853)PLK;SLS(0.128)GS(0.872)PLK ; 114.51 0.0095241 209113000 10462.5 9958.1 10194 8586 9075.3 9090.9 8216.2 5841 11212.5 12327 TRUE FALSE FALSE 9236.10161 10264.89726 10745.11848 8936.174192 8405.8332 8917.506229 8533.101586 6505.91583 10750.316 12253.67846 0.753741143 0.83769925 0.876889214 0.729264622 0.685984476 0.727741165 0.696370614 0.530935739 0.877313375 1 13.58092728 -13.52287875 0.043536861 2.293624517 7.90E-10 0.706713334 0.067149093 202.8610229 0.703254822 33.7808304 9.955263549 3.00E-14 13.52287875 -2.293624516 AAEPVTFHVPWK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 AAEPVTFHVPWKR 13 1 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 0 1 ; AAEPVTFHVPWK(1)R;AAEPVTFHVPWK(1)R 89.301 0.020628 1001680 549.08 281.74 456.16 378.75 515 305.489 394.03 413.84 587.3 420.51 FALSE TRUE FALSE 484.7176748 290.4200755 480.8213894 394.1970621 477.009476 299.6623063 409.2278691 460.9498728 563.0912454 418.0087878 1.159587284 0.694770263 1.150266223 0.943035347 1.141147004 0.716880398 0.978993459 1.102727709 1.347079922 1 8.707389462 MMT(ph)GQTMS(ph)ERGTKKR ddPTM_HeLa_CUDC101_4h_R1 1 MMTGQTMSERGTKKR 15 3 Q9H8M2-6;F2Z2E8 Q9H8M2-6 BRD9 Bromodomain-containing protein 9 2 0 MMT(0.993)GQT(0.442)MS(0.564)ERGT(0.001)KKR 45.864 0.038813 82015000 943.62 699.37 679.02 759.13 1023.6 766.87 687.42 586.93 1002.9 974.46 TRUE FALSE FALSE 833.010294 720.9167607 715.7298751 790.0906026 948.0910673 752.2432324 713.9340197 653.7437387 961.5600375 968.6638686 0.859958053 0.74423831 0.73888363 0.815649916 0.978761672 0.776578189 0.737029679 0.674892251 0.992666361 1 9.91985232 -13.52287875 0.106152975 1.733354904 0.652966338 0.55430857 0.076051481 65.22866949 0.511859882 10.30979303 0.586739929 3.00E-14 13.52287875 -1.080388566 RPATADSPKPSAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 RPATADSPKPSAKK 14 3 Q03111 Q03111 MLLT1 Protein ENL 0 1 ; RPATADSPK(0.002)PSAK(0.998)K;RPATADSPK(0.023)PSAK(0.977)K 65.495 0.030149 10139400 7872.6 10015.9 12751.7 13860.2 14297.2 12491.6 12186.7 13710.6 4240.5 5119.9 FALSE TRUE FALSE 6949.785762 10324.47801 13441.09547 14425.47886 13242.52404 12253.34354 12656.7451 15271.35928 4065.704795 5089.446607 1.365528769 2.02860523 2.640973864 2.834390451 2.601957553 2.407598407 2.486860769 3.000593279 0.798850073 1 12.31329308 -7.133622789 1.650645416 1.138010705 2.660688364 0.927566936 0.20111511 0.062288727 0.325383271 0.035522848 0.044306653 7.35E-08 7.133622789 1.522677659 up AKPTGSGKEEGPAPCK(ac)QMK ddPTM_HeLa_CUDC101_4h_R1 3 AKPTGSGKEEGPAPCKQMK 19 3 D6RCB6;Q8IUF8-2;Q8IUF8-4;Q8IUF8 D6RCB6 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA 0 1 ;; AKPTGSGKEEGPAPCK(1)QMK;AKPTGSGKEEGPAPCK(1)QMK;AK(0.001)PTGSGK(0.001)EEGPAPCK(0.999)QMK 79.837 0.0057784 52753000 16511.3 17945.6 19588.1 19228.6 20653.5 20171.8 20729.1 22942.3 11829 10369.7 FALSE TRUE FALSE 14575.87044 18498.48267 20647.09194 20012.82542 19129.93245 19787.05652 21528.62833 25553.9587 11341.40361 10308.02056 1.414031953 1.794571766 2.003012296 1.941480937 1.855829869 1.919578682 2.08853176 2.479036449 1.100250387 1 13.3314797 -7.122477535 0.272835309 0.832402426 2.424934247 0.886905135 0.146021436 0.403825192 0.101993133 0.194271334 0.247936345 7.54E-08 7.122477535 1.592531821 QVETEEAGVVTTATASVNLKVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 8 QVETEEAGVVTTATASVNLKVSPK 24 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QVETEEAGVVTTATASVNLKVS(0.999)PK;QVETEEAGVVTT(0.001)AT(0.002)AS(0.006)VNLKVS(0.991)PK;QVETEEAGVVTTATAS(0.011)VNLKVS(0.988)PK;QVETEEAGVVT(0.013)T(0.038)AT(0.269)AS(0.173)VNLKVS(0.507)PK;QVETEEAGVVTTATAS(0.001)VNLKVS(0.999)PK;QVETEEAGVVT(0.005)T(0.005)AT(0.001)AS(0.046)VNLKVS(0.942)PK;QVETEEAGVVTTATAS(0.003)VNLKVS(0.997)PK;QVETEEAGVVTTATASVNLKVS(1)PK ;;;;;;; 130.7 4.28E-09 385728000 15120.2 14603.37 13269.35 12944.07 15295.45 12449.62 11516.09 12286.48 13739.81 15903.09 TRUE FALSE FALSE 13347.83308 15053.28252 13986.7312 13471.98512 14167.13513 12212.16424 11960.26945 13685.12322 13173.44922 15808.49771 0.844345448 0.952227264 0.884760301 0.852198948 0.896172134 0.77250631 0.756572172 0.86568145 0.833314427 1 13.94841265 -13.52287875 0.126388006 1.517172863 0.771329682 0.029977772 0.069010515 45.08045119 0.406794717 5.948021029 0.20672656 3.00E-14 13.52287875 -0.745843181 AAFDDAIAELDTLSEESYK ddPTM_HeLa_CUDC101_4h_R1 2 AAFDDAIAELDTLSEESYK 19 0 P62258;P62258-2;K7EM20 P62258 YWHAE 14-3-3 protein epsilon 0 0 ; ; 206.66 2.45E-23 342660000 4164.59 3137.76 3071.38 2928.79 3279.69 3257.57 3167.34 2790.2 3927.34 4957.6 FALSE FALSE TRUE 3676.423073 3234.430666 3237.428093 3048.238716 3037.753803 3195.43728 3289.505365 3107.82509 3765.453383 4928.111975 0.746010458 0.656322479 0.656930709 0.61854088 0.616413308 0.648410039 0.667498097 0.630631996 0.764076263 1 12.26681932 -8.485321688 0.503071921 1.019041165 0.627086044 0.561850783 0.07315289 0.120172095 0.062392143 0.021353638 0.008088439 3.27E-09 8.485321688 -0.391955121 AAFK(ac)ELQSTFK ddPTM_HeLa_CUDC101_4h_R1 1 AAFKELQSTFK 11 1 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 0 1 AAFK(1)ELQSTFK 156.71 0.00012221 279610 86.768 0 0 148.64 0 181.96 0 154.73 0 0 FALSE TRUE FALSE 76.59718657 0 0 154.7021817 0 178.4894162 0 172.3438378 0 0 0 AAFK(ac)EPK ddPTM_HeLa_CUDC101_4h_R1 2 AAFKEPK 7 1 Q03111 Q03111 MLLT1 Protein ENL 0 1 ; AAFK(1)EPK;AAFK(1)EPK 106.04 0.010775 69802000 25549 18233.8 13805.2 25069 20280.9 21744 21852 19355.1 6850.4 3502.9 FALSE TRUE FALSE 22554.18495 18795.56177 14551.55087 26091.42218 18784.81841 21329.26943 22694.83896 21558.40635 6568.023612 3482.064595 6.477244846 5.397821107 4.179000841 7.49308965 5.394735767 6.125466328 6.5176387 6.19127123 1.886244047 1 11.76572725 -9.376973602 0.643462698 0.170824889 6.06295689 0.811596906 0.868395787 0.330949204 0.190513742 1.148150479 0.178178355 4.20E-10 9.376973602 5.892132 SAEPRPELGPGQETGTNS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SAEPRPELGPGQETGTNSR 19 1 Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5;Q9Y4B5-4 Q9Y4B5-2 MTCL1 Microtubule cross-linking factor 1 1 0 SAEPRPELGPGQET(0.001)GT(0.008)NS(0.991)R 121.91 3.06E-05 33356000 1207.6 981.95 1027 1082.7 1089 994.75 1158.8 984.67 1068.2 900.58 TRUE FALSE FALSE 1066.046959 1012.202716 1082.522727 1126.857186 1008.66664 975.7768011 1203.495304 1096.760853 1024.168344 895.2233101 1.190816801 1.130670643 1.209220889 1.258744241 1.126720706 1.089981449 1.344352063 1.225125441 1.144036725 1 9.806103792 -13.52287875 0.190734412 0.086989552 1.239528065 0.196992599 0.081463395 28.84887627 0.341849549 9.747041893 0.079697389 3.00E-14 13.52287875 1.152538513 AIGS(ph)TSKPQESPKGK ddPTM_HeLa_CUDC101_4h_R1 1 AIGSTSKPQESPKGK 15 2 F5H8D7;P18887;M0QYS5 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 AIGS(0.25)T(0.25)S(0.25)KPQES(0.25)PKGK 49.463 0.040444 220210000 7983.1 7357.8 7649.9 7941.5 8121.8 6999.9 6200.7 6814.7 8353.4 9064.1 TRUE FALSE FALSE 7047.33312 7584.485097 8063.476734 8265.388696 7522.670995 6866.38857 6439.863076 7590.457902 8009.069316 9010.18633 0.782151763 0.841767841 0.894928966 0.917338265 0.834907373 0.762069542 0.714731398 0.842430736 0.888890532 1 13.13734123 -13.52287875 0.286049102 2.462949193 0.80531813 0.256975462 0.067603178 27.27563223 0.368622447 22.83243906 0.029264434 3.00E-14 13.52287875 -1.657631063 KRES(ph)ESESDETPPAAPQLIK ddPTM_HeLa_CUDC101_4h_R1 1 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 KRES(0.804)ES(0.186)ES(0.008)DET(0.002)PPAAPQLIK 99.93 0.00065401 34282000 5825.9 6188.6 4723.5 5394.2 4617 4604 3818.3 3928.2 6824 7196.5 TRUE FALSE FALSE 5142.996833 6379.263431 4978.866698 5614.198792 4276.413108 4516.186371 3965.57311 4375.37041 6542.711832 7153.694898 0.718928736 0.89174385 0.695985329 0.784797069 0.597790816 0.631308217 0.554339145 0.611623849 0.914591959 1 12.80447287 -13.52287875 0.067805103 2.203114244 0.215512297 0.770864109 0.069116728 76.05306515 0.401566069 14.70220157 2.244793623 3.00E-14 13.52287875 -1.987601947 AAGDGGSGPPEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AAGDGGSGPPEKK 13 1 H3BP71;O75150-3;O75150-4;O75150;H3BQ99;H3BUL6;I3L332 H3BP71 RNF40 E3 ubiquitin-protein ligase BRE1B 0 1 ; AAGDGGSGPPEK(1)K;AAGDGGSGPPEK(1)K 224.66 5.56E-23 40659000 11419.9 11820.2 12899.4 12775.8 12761.1 10699.5 11276 13563.1 8480 9069 FALSE TRUE FALSE 10081.27663 12184.36635 13596.78058 13296.85235 11819.73908 10495.42486 11710.9191 15107.06848 8130.450811 9015.057185 1.118270958 1.3515573 1.508230098 1.474960399 1.311110827 1.16421057 1.299039913 1.675759584 0.901874569 1 13.13812093 -7.33647857 2.480477643 1.047447512 1.392392721 0.625608177 0.138737302 0.15399132 1.791012741 0.024800144 0.02858554 4.61E-08 7.33647857 0.344945209 AAGEPGTSMPPEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AAGEPGTSMPPEKK 14 1 C9J0A5;C9JXC9;Q5VTR2;C9JWJ4 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 0 1 ; AAGEPGTSMPPEK(1)K;AAGEPGTSMPPEK(1)K 188.91 5.22E-12 841400 371.24 321.25 236.22 481.34 191.94 553.96 506.7 522.67 385.32 240.36 FALSE TRUE FALSE 327.72381 331.1473317 248.9907677 500.9711257 177.7809686 543.394136 526.2435887 582.1686401 369.4369465 238.930328 1.37162918 1.385957716 1.042106165 2.096724722 0.744070332 2.274278617 2.20249808 2.436562344 1.546212026 1 7.90044618 -1 0.289130547 1.095510688 13.00517116 0.483341712 0.410902985 23.5189907 0.300531623 0.144248092 145.0242596 0.1 1 11.90966047 GNKHDDGTQS(ph)DSENAGAHR ddPTM_HeLa_CUDC101_4h_R1 5 GNKHDDGTQSDSENAGAHR 19 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 GNKHDDGT(0.002)QS(0.988)DS(0.009)ENAGAHR;GNKHDDGTQS(0.998)DS(0.002)ENAGAHR;GNKHDDGTQS(0.993)DS(0.006)ENAGAHR;GNKHDDGTQS(0.996)DS(0.003)ENAGAHR;GNKHDDGT(0.01)QS(0.934)DS(0.056)ENAGAHR ;;;; 107.39 0.00018435 21201190 5788.13 3426.27 5737.79 5405.93 4309.59 4579.95 4472.38 2363.05 5804.44 7479.22 TRUE FALSE FALSE 5109.654176 3531.829318 6047.992283 5626.407192 3991.680132 4492.595084 4644.881195 2632.05006 5565.178526 7434.733267 0.687267988 0.475044523 0.813478045 0.756773241 0.536896212 0.604271185 0.624754248 0.354020779 0.748537752 1 12.86006527 -13.52287875 0.115753688 2.357877726 0.383551959 0.373592191 0.13809485 42.9874798 0.362032585 13.61573528 0.611772723 3.00E-14 13.52287875 -1.974325767 KQPDS(ph)PAGSTTSEEK ddPTM_HeLa_CUDC101_4h_R1 2 KQPDSPAGSTTSEEK 15 1 Q6ZSZ6-2;Q6ZSZ6 Q6ZSZ6-2 TSHZ1 Teashirt homolog 1 1 0 KQPDS(0.999)PAGSTTSEEK;KQPDS(0.992)PAGS(0.005)T(0.002)T(0.001)SEEK ; 75.334 0.015622 21051900 5321.7 4502.3 4699.3 4429.5 4697 4587.5 3346.2 3865.1 4853.9 6156.1 TRUE FALSE FALSE 4697.898393 4641.010526 4953.358373 4610.154156 4350.511668 4500.001081 3475.264055 4305.087361 4653.820188 6119.483243 0.767695279 0.758399091 0.80944063 0.753356774 0.710927948 0.735356386 0.567901556 0.703505049 0.760492349 1 12.57919412 -13.52287875 0.114568939 1.969457694 0.554800022 0.259354655 0.087406122 24.53856464 0.204958001 5.507167777 0.25470837 3.00E-14 13.52287875 -1.414657672 SGS(ph)IVELIAGGGSSCSPVLSR ddPTM_HeLa_CUDC101_4h_R1 1 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 1 0 S(0.214)GS(0.786)IVELIAGGGSSCSPVLSR 79.383 0.0014969 0 210.45 241.63 175.52 159.76 233.32 160.81 154.87 160.28 160.54 299.89 TRUE FALSE FALSE 185.78137 249.0743339 185.0091421 166.2757033 216.1084484 157.7428172 160.8433878 178.5256273 153.9224732 298.1062409 0.623205235 0.835522038 0.62061479 0.557773305 0.724937686 0.529149664 0.539550555 0.598865783 0.516334287 1 8.219682769 -13.52287875 0.188902757 2.70944975 0.541379321 0 0.172506238 17.67974663 0.208424558 11.09633564 0.094318399 3.00E-14 13.52287875 -2.168070429 TLSNAEDYLDDEDS(ph)D ddPTM_HeLa_CUDC101_4h_R1 5 TLSNAEDYLDDEDSD 15 0 Q92882 Q92882 OSTF1 Osteoclast-stimulating factor 1 1 0 TLSNAEDYLDDEDS(1)D;TLSNAEDYLDDEDS(1)D;TLSNAEDYLDDEDS(1)D;TLSNAEDYLDDEDS(1)D;TLSNAEDYLDDEDS(1)D ;;;; 305.69 1.74E-124 242026500 20110.09 19646.82 17339.27 16173.66 20140.22 18332.56 16026.52 16229.46 20368.46 20564.62 TRUE FALSE FALSE 17752.81574 20252.11524 18276.68338 16833.29176 18654.5161 17982.89696 16644.66824 18076.95612 19528.86346 20442.30073 0.868435308 0.990696473 0.894061957 0.823453876 0.912544842 0.879690462 0.814226758 0.884291664 0.955316318 1 14.31926996 -13.52287875 0.192980444 1.546034947 0.854325014 0.428676073 0.045539333 31.65679752 0.377432194 6.518040718 0.050828892 3.00E-14 13.52287875 -0.691709933 EFDEDS(ph)DEKEEEEDTYEK ddPTM_HeLa_CUDC101_4h_R1 1 EFDEDSDEKEEEEDTYEK 18 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 EFDEDS(0.996)DEKEEEEDT(0.004)YEK 74.726 0.0081667 130050000 2698.5 2298.6 2129.1 2190.7 1966.4 2232.5 1585 1166.1 3126.9 3486.5 TRUE FALSE FALSE 2382.185921 2369.417141 2244.205586 2280.046215 1821.34259 2189.918782 1646.133981 1298.84411 2998.007859 3465.762143 0.687348359 0.683664096 0.647535951 0.657877292 0.525524405 0.631872209 0.47497027 0.374764354 0.865035665 1 11.75895693 -13.52287875 0.069613828 2.593710146 1.28E-12 0.85938241 0.064222285 40.64891656 0.219912297 10.46916105 1.523484848 3.00E-14 13.52287875 -2.593710146 AAGIDEQENWHEGK ddPTM_HeLa_CUDC101_4h_R1 1 AAGIDEQENWHEGK 14 0 P28838-2;P28838 P28838-2 LAP3 Cytosol aminopeptidase 0 0 120.6 0.00011696 0 3129.3 2715.1 2763.5 2949.5 3235.8 2678.8 3822.4 3300.6 2965.6 2260.1 FALSE FALSE TRUE 2762.488198 2798.749013 2912.903169 3069.793359 2997.101481 2627.706353 3969.831248 3676.326963 2843.356713 2246.656825 1.22959954 1.245739439 1.296550117 1.366382852 1.334027275 1.169607358 1.766994943 1.636354481 1.265594585 1 11.13356406 -1 0.158935867 0.964646322 3.639176184 0.556209433 0.140248443 25.10924972 0.252964024 0.225897756 15.76992677 0.1 1 2.674529863 AAGIGK(ac)DFK ddPTM_HeLa_CUDC101_4h_R1 2 AAGIGKDFK 9 1 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 1 ; AAGIGK(1)DFK;AAGIGK(1)DFK 111.46 0.0038345 1049000 1294.6 1256.4 1134.84 1124.76 1468.1 1145.31 1352.21 1452.91 1308.16 1423.99 FALSE TRUE FALSE 1142.84895 1295.108195 1196.192883 1170.632574 1359.801188 1123.46512 1404.365193 1618.303402 1254.237091 1415.520044 0.807370376 0.91493455 0.845055418 0.826998232 0.960637183 0.793676589 0.992119609 1.143257143 0.88606099 1 10.46711646 -4.418358241 3.481171505 0.894541141 1.141394913 0.609103766 0.064701225 0.172024071 3.459061431 0.011331253 0.085212257 3.82E-05 4.418358241 0.246853772 TKDQPDGSSLS(ph)PAQSPSQSQPPAASSLR ddPTM_HeLa_CUDC101_4h_R1 2 TKDQPDGSSLSPAQSPSQSQPPAASSLR 28 1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 TKDQPDGS(0.004)S(0.023)LS(0.924)PAQS(0.031)PS(0.011)QS(0.006)QPPAASSLR;TKDQPDGS(0.004)S(0.03)LS(0.965)PAQS(0.001)PSQSQPPAASSLR ; 92.225 9.36E-08 55548000 3780.2 2541.7 3322.4 2846.9 3122.9 3351.9 2500.5 2284.97 3318.4 4118.6 TRUE FALSE FALSE 3337.090686 2620.006764 3502.018994 2963.008887 2892.529889 3287.968092 2596.945123 2545.081749 3181.614147 4094.102384 0.815097028 0.639946567 0.855381391 0.723726133 0.706511371 0.803098649 0.634313673 0.621645848 0.777121295 1 11.99933147 -13.52287875 0.095227755 1.985251959 0.496256402 0.228904834 0.098317659 46.03123633 0.329514735 8.985480892 0.672708093 3.00E-14 13.52287875 -1.488995557 ATAS(ph)SPTQQDGR ddPTM_HeLa_CUDC101_4h_R1 1 ATASSPTQQDGR 12 0 Q9BV73-2;Q9BV73 Q9BV73-2 CEP250 Centrosome-associated protein CEP250 1 0 ATAS(0.731)S(0.265)PT(0.004)QQDGR 140.33 0.0012386 4363600 2918.5 2128.7 2989.6 3844.2 2810.5 2518.6 2015.9 1356.1 3411.5 3933.6 TRUE FALSE FALSE 2576.397854 2194.282724 3151.226819 4000.983092 2603.175014 2470.561901 2093.653938 1510.472942 3270.876526 3910.202772 0.658891112 0.561168525 0.805898569 1.023216269 0.665739136 0.631824497 0.535433598 0.386290182 0.83649793 1 11.93302771 -13.52287875 0.052959421 2.324469261 1.79E-16 0.401788795 0.149875067 290.6851155 1.216536904 55.12504552 12.55080105 3.00E-14 13.52287875 -2.324469261 T(ph)KFS(ph)S(ph)RNKEDS(ph)TR ddPTM_HeLa_CUDC101_4h_R1 1 TKFSSRNKEDSTR 13 3 Q8TD57;Q8TD57-3;Q8TD57-2 Q8TD57 DNAH3 "Dynein heavy chain 3, axonemal" 4 0 T(1)KFS(1)S(1)RNKEDS(0.569)T(0.431)R 69.045 0.00238 0 3199.6 2962.7 2558 2724.9 2750.8 2538.5 2354.8 2071 2855 3685.6 TRUE FALSE FALSE 2824.547738 3053.977275 2696.293218 2836.0332 2547.878964 2490.082342 2445.625425 2306.754269 2737.315692 3663.677887 0.770959627 0.833582364 0.735952587 0.774094581 0.695442952 0.679667378 0.667532873 0.629628024 0.747149661 1 11.83907695 -13.52287875 0.094939726 1.972316857 0.48517948 0.316418159 0.082600029 20.58006842 0.146938859 4.000432537 0.301692755 3.00E-14 13.52287875 -1.487137377 (ac)MEDS(ph)MDMDMSPLRPQNYLFGCELK ddPTM_HeLa_CUDC101_4h_R1 10 MEDSMDMDMSPLRPQNYLFGCELK 24 1 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 1 0 MEDS(0.504)MDMDMS(0.454)PLRPQNY(0.042)LFGCELK;MEDS(0.495)MDMDMS(0.5)PLRPQNY(0.005)LFGCELK;MEDS(0.866)MDMDMS(0.134)PLRPQNYLFGCELK;MEDS(0.847)MDMDMS(0.149)PLRPQNY(0.003)LFGCELK;MEDS(0.844)MDMDMS(0.143)PLRPQNY(0.012)LFGCELK;MEDS(0.731)MDMDMS(0.229)PLRPQNY(0.039)LFGCELK;MEDS(0.483)MDMDMS(0.465)PLRPQNY(0.052)LFGCELK;MEDS(0.497)MDMDMS(0.497)PLRPQNY(0.006)LFGCELK;MEDS(0.51)MDMDMS(0.489)PLRPQNY(0.001)LFGCELK;MEDS(0.509)MDMDMS(0.482)PLRPQNY(0.009)LFGCELK ;;;;;;;;; 80.752 3.26E-05 351513000 27514.17 24399.34 22948.78 22572.98 27675.05 26833.57 24090.15 23628.46 28339.23 21591.4 TRUE FALSE FALSE 24289.0007 25151.05475 24189.46046 23493.60369 25633.5167 26321.76436 25019.31516 26318.22838 27171.07494 21462.97339 1.131669888 1.171834596 1.127032123 1.094610857 1.194313399 1.226380142 1.165696602 1.226215394 1.265951108 1 14.38956233 -13.52287875 0.110752737 0.411467758 1.274665733 0 0.089696149 30.28853413 0.246128209 3.999590275 0.203141796 3.00E-14 13.52287875 0.863197975 S(ph)GNSDSIER ddPTM_HeLa_CUDC101_4h_R1 1 SGNSDSIER 9 0 A0A5F9ZI51;A0A5F9ZGW5;C9J8U3;A0A0A0MRW7;Q7Z2E3-13;Q7Z2E3-4;Q7Z2E3-5;Q7Z2E3-9;Q7Z2E3-10;Q7Z2E3-11;Q7Z2E3-8;Q7Z2E3-7;Q7Z2E3 A0A5F9ZI51 APTX Aprataxin 1 0 S(0.689)GNS(0.309)DS(0.001)IER 91.123 0.02709 57628000 3709.4 1777.2 3303.5 3285.4 2409.2 2462.9 2907.3 1066 4082 4687.2 TRUE FALSE FALSE 3274.589755 1831.953425 3482.097203 3419.392813 2231.478116 2415.924286 3019.435535 1187.349131 3913.738232 4659.320326 0.70280417 0.393180399 0.747340161 0.73388232 0.478927818 0.518514315 0.648042058 0.254833119 0.839980503 1 12.1859038 -13.52287875 0.088925275 2.562781357 0.157797363 0.531291674 0.144134304 65.57476687 0.442307947 19.36143764 1.702267457 3.00E-14 13.52287875 -2.404983995 SSGS(ph)PYGGGYGSGGGSGGYGSR ddPTM_HeLa_CUDC101_4h_R1 35 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;P51991-2;H7C1J8 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 0 SS(0.001)GS(0.999)PYGGGYGSGGGSGGYGSR;S(0.1)S(0.1)GS(0.8)PYGGGYGSGGGSGGYGSR;SS(0.005)GS(0.995)PYGGGYGSGGGSGGYGSR;SS(0.002)GS(0.997)PY(0.001)GGGYGSGGGSGGYGSR;S(0.004)S(0.004)GS(0.991)PY(0.001)GGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.054)S(0.002)GS(0.941)PY(0.003)GGGYGSGGGSGGYGSR;S(0.034)S(0.103)GS(0.863)PYGGGYGSGGGSGGYGSR;S(0.004)S(0.004)GS(0.992)PYGGGYGSGGGSGGYGSR;S(0.012)S(0.041)GS(0.947)PYGGGYGSGGGSGGYGSR;S(0.002)SGS(0.997)PYGGGYGSGGGSGGYGSR;S(0.041)S(0.01)GS(0.949)PYGGGYGSGGGSGGYGSR;S(0.004)S(0.007)GS(0.988)PYGGGYGSGGGSGGYGSR;S(0.019)S(0.003)GS(0.978)PYGGGYGSGGGSGGYGSR;S(0.001)S(0.002)GS(0.998)PYGGGYGSGGGSGGYGSR;S(0.061)S(0.065)GS(0.828)PY(0.046)GGGYGSGGGSGGYGSR;S(0.071)S(0.011)GS(0.918)PYGGGYGSGGGSGGYGSR;S(0.044)S(0.015)GS(0.942)PYGGGYGSGGGSGGYGSR;S(0.005)S(0.001)GS(0.995)PYGGGYGSGGGSGGYGSR;SS(0.006)GS(0.994)PYGGGYGSGGGSGGYGSR;S(0.001)SGS(0.999)PYGGGYGSGGGSGGYGSR;S(0.047)S(0.047)GS(0.906)PYGGGYGSGGGSGGYGSR;S(0.07)S(0.104)GS(0.784)PY(0.04)GGGYGS(0.001)GGGSGGYGSR;SSGS(0.804)PYGGGY(0.005)GS(0.006)GGGS(0.127)GGY(0.007)GS(0.051)R;S(0.012)S(0.04)GS(0.948)PYGGGYGSGGGSGGYGSR;S(0.005)S(0.001)GS(0.995)PYGGGYGSGGGSGGYGSR;SS(0.001)GS(0.994)PYGGGYGS(0.004)GGGSGGYGSR;S(0.002)SGS(0.998)PYGGGYGSGGGSGGYGSR;S(0.002)S(0.002)GS(0.564)PY(0.425)GGGY(0.004)GS(0.002)GGGSGGYGSR;SS(0.001)GS(0.999)PYGGGYGSGGGSGGYGSR;S(0.042)S(0.013)GS(0.911)PY(0.03)GGGY(0.001)GS(0.001)GGGS(0.002)GGYGS(0.001)R;S(0.001)S(0.001)GS(0.899)PY(0.095)GGGY(0.004)GS(0.001)GGGSGGYGSR;S(0.001)S(0.001)GS(0.997)PYGGGYGS(0.001)GGGSGGYGSR;SSGS(0.999)PYGGGYGSGGGSGGYGSR;S(0.013)S(0.013)GS(0.963)PY(0.01)GGGYGSGGGSGGYGSR ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; 361.7 6.88E-249 4168756300 60789.03 51959.52 52230.12 49303.52 56454.16 54797.71 49879.2 44896.24 60515.81 59410.46 TRUE FALSE FALSE 53663.43205 53560.33122 55053.83827 51314.33065 52289.64909 53752.53498 51803.05745 50007.04648 58021.3227 59057.08394 0.908670535 0.906924752 0.932213963 0.868893742 0.885408584 0.910179294 0.87716924 0.8467578 0.982461693 1 15.8498225 -13.52287875 0.135856377 1.396248332 0.845329954 0.83606768 0.018638997 19.48195595 0.185629124 2.063683304 0.057314435 3.00E-14 13.52287875 -0.550918378 KPPAPPS(ph)PVQSQSPSTNWSPAVPVK ddPTM_HeLa_CUDC101_4h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KPPAPPS(0.706)PVQS(0.212)QS(0.055)PS(0.021)T(0.005)NWS(0.001)PAVPVK 58.498 0.0034738 54001000 7576.4 6809.1 6491.9 6874.5 7315.9 5830.2 5236.5 5991.4 6977 8497.4 TRUE FALSE FALSE 6688.305877 7018.8803 6842.871751 7154.871824 6776.220632 5718.998649 5438.473559 6673.436758 6689.405107 8446.857087 0.791809996 0.830945786 0.810108622 0.847045445 0.80221798 0.6770564 0.643845812 0.790049682 0.791940131 1 13.04419893 -13.52287875 0.122936307 1.80433207 0.647115327 0.181054422 0.082438415 33.17816937 0.293043666 6.583209528 0.248548929 3.00E-14 13.52287875 -1.157216743 AAIDWFDGK ddPTM_HeLa_CUDC101_4h_R1 2 AAIDWFDGK 9 0 Q92804-2;Q92804;A0A075B7D9;H3BPE7;P35637-2;P35637 Q92804-2;H3BPE7 TAF15;FUS TATA-binding protein-associated factor 2N;RNA-binding protein FUS 0 0 ; ; 149.94 0.0040097 40726000 9306.9 8222.1 8171.3 8019.1 7979.9 7438.5 7337.8 6690.8 7663.1 8390.2 FALSE FALSE TRUE 8215.95929 8475.413155 8613.065195 8346.15356 7391.238675 7296.623006 7620.821404 7452.453627 7347.223775 8340.294717 0.985092202 1.016200679 1.032705137 1.000702474 0.886208333 0.874863929 0.913735265 0.893547996 0.880930953 1 13.02588265 -5.762757036 24.99999998 0.99852897 0.892404684 0.55327614 0.04037252 7.779243943 147600.8278 0.002630101 0.004964141 1.73E-06 5.762757036 -0.106124286 AMTVEKAS(ph)PVGDGNFR ddPTM_HeLa_CUDC101_4h_R1 1 AMTVEKASPVGDGNFR 16 1 Q86YS7;H0YFC4 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 AMTVEKAS(1)PVGDGNFR 160.43 5.50E-08 0 672.81 472.62 657.55 513.7 705.74 653.58 598.81 569.84 690.69 490.13 TRUE FALSE FALSE 593.9442317 487.180862 693.099142 534.6509064 653.6789662 641.1140504 621.9063023 634.7082822 662.2194659 487.214685 1.219060611 0.999930579 1.422574408 1.097362052 1.341665156 1.315875876 1.276452294 1.302728144 1.359194389 1 8.928413807 -13.52287875 0.1105687 0.126435383 1.414492058 0 0.154282185 60.614873 0.49189463 11.92263935 0.608309336 3.00E-14 13.52287875 1.288056676 YGPADVEDTTGSGATDSKDDDDIDLFGS(ph)DDEEESEEAKR ddPTM_HeLa_CUDC101_4h_R1 6 YGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKR 39 2 P24534;C9JZW3 P24534 EEF1B2 Elongation factor 1-beta 1 0 YGPADVEDT(0.204)T(0.204)GS(0.176)GAT(0.054)DS(0.05)KDDDDIDLFGS(0.308)DDEEES(0.003)EEAKR;YGPADVEDTTGSGATDSKDDDDIDLFGS(0.999)DDEEESEEAKR;YGPADVEDT(0.03)T(0.03)GS(0.026)GAT(0.026)DS(0.066)KDDDDIDLFGS(0.821)DDEEES(0.001)EEAKR;YGPADVEDT(0.001)T(0.001)GS(0.002)GAT(0.002)DS(0.014)KDDDDIDLFGS(0.975)DDEEES(0.006)EEAKR;YGPADVEDT(0.009)T(0.009)GS(0.009)GAT(0.003)DS(0.094)KDDDDIDLFGS(0.871)DDEEES(0.005)EEAKR;YGPADVEDT(0.001)T(0.001)GS(0.001)GAT(0.001)DS(0.003)KDDDDIDLFGS(0.991)DDEEESEEAKR ;;;;; 85.242 1.46E-11 12757791000 12686.59 12654.77 10760.04 10081.72 12535.98 11889.29 11171.74 12314.28 12072.92 9767.94 TRUE FALSE FALSE 11199.48715 13044.64846 11341.76031 10492.89612 11611.22573 11662.5216 11602.63775 13716.08786 11575.26913 9709.839858 1.153416258 1.343446303 1.16806873 1.080645641 1.195820518 1.201103393 1.194936057 1.412596712 1.192117408 1 13.24523179 -13.52287875 0.099992022 0.256999889 1.374362446 0.105778197 0.104867731 74.80881827 0.558317264 11.50244081 0.763560234 3.00E-14 13.52287875 1.117362557 AAK(ac)LAPEFAK ddPTM_HeLa_CUDC101_4h_R1 2 AAKLAPEFAK 10 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 1 ; AAK(1)LAPEFAK;AAK(1)LAPEFAK 100.48 0.010976 1692020 2341.58 1902.39 1502.09 2023.52 2106.34 1679.9 1386.98 1764.37 1644.32 1696.25 FALSE TRUE FALSE 2067.103542 1961.000381 1583.297529 2106.047892 1950.959495 1647.858706 1440.476283 1965.218749 1576.540434 1686.16063 1.225923264 1.162997372 0.938995669 1.249019729 1.157042491 0.977284535 0.854293629 1.165499131 0.934988284 1 10.71952626 -5.251113766 23.62195925 1.114265332 0.984552526 0.093197146 0.126692187 448.2741614 1025512.253 0.01747736 0.043952543 5.61E-06 5.251113766 -0.129712806 KETQS(ph)PEQVK ddPTM_HeLa_CUDC101_4h_R1 4 KETQSPEQVK 10 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 KET(0.004)QS(0.996)PEQVK;KET(0.037)QS(0.963)PEQVK;KET(0.075)QS(0.925)PEQVK;KET(0.045)QS(0.955)PEQVK ;;; 101.43 0.0078382 1324510000 29685.4 11894.1 32430.7 30683.5 19552.6 17771.1 21281 9614.2 28415.8 41247.4 TRUE FALSE FALSE 26205.72241 12260.54312 34184.00174 31934.90576 18110.24365 17432.14588 22101.8153 10708.64167 27244.4887 41002.05863 0.63913187 0.299022623 0.833714279 0.778861033 0.441691082 0.425152943 0.5390416 0.261173268 0.664466361 1 15.32340873 -13.52287875 0.095665811 2.628782134 0.145286979 0.281682311 0.192458767 69.01537286 0.496000112 22.57135441 1.671172153 3.00E-14 13.52287875 -2.483495156 AQPFGFIDS(ph)DTDAEEERIPATPVVIPMK ddPTM_HeLa_CUDC101_4h_R1 1 AQPFGFIDSDTDAEEERIPATPVVIPMK 28 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AQPFGFIDS(0.5)DT(0.5)DAEEERIPATPVVIPMK 78.098 1.43E-05 85024000 1383 1518.2 1288.9 1109.2 1219.3 1205.5 1107.2 879.2 1609.5 1639.5 TRUE FALSE FALSE 1220.886836 1564.973942 1358.581833 1154.43797 1129.354668 1182.507096 1149.905075 979.2845742 1543.155729 1629.748181 0.749126062 0.960255063 0.833614572 0.708353587 0.692962681 0.72557657 0.70557224 0.600880912 0.946867588 1 10.67043335 -13.52287875 0.057964949 2.005888651 0.282986935 0.722033178 0.067587792 144.242609 0.657696537 21.53644061 4.281079323 3.00E-14 13.52287875 -1.722901716 EREDES(ph)EDESDILEESPCGR ddPTM_HeLa_CUDC101_4h_R1 2 EREDESEDESDILEESPCGR 20 1 Q9NSY0 Q9NSY0 NRBP2 Nuclear receptor-binding protein 2 1 0 EREDES(0.982)EDES(0.018)DILEESPCGR;EREDES(0.999)EDES(0.001)DILEESPCGR ; 118.9 1.46E-05 39814000 3026.5 2590.05 2560.17 2414.99 2961.4 2695.54 2641.94 2619.6 2707.85 2274.7 TRUE FALSE FALSE 2671.738258 2669.846371 2698.580534 2513.483731 2742.943422 2644.127066 2743.840511 2917.804675 2596.231277 2261.169983 1.181573379 1.180736694 1.193444347 1.111585484 1.213063787 1.169362359 1.213460523 1.290395988 1.148180498 1 11.14285374 -13.52287875 0.181173956 0.155334159 1.238052583 0.282899596 0.060962523 17.56648853 0.202362212 5.216036992 0.052297737 3.00E-14 13.52287875 1.082718424 NNTAAETEDDESDGEDRGGGT(ph)SGVR ddPTM_HeLa_CUDC101_4h_R1 1 NNTAAETEDDESDGEDRGGGTSGVR 25 1 A0A590UJS4;Q6KC79-2 A0A590UJS4 NIPBL Nipped-B-like protein 1 0 NNTAAETEDDES(0.44)DGEDRGGGT(0.53)S(0.03)GVR 127.74 3.24E-10 55964000 949.68 955.85 709.73 873.65 837.99 804.67 724.81 573.58 1212.2 1160.8 TRUE FALSE FALSE 838.35995 985.2986055 748.1001506 909.2812232 776.1731472 789.3222604 752.7661645 638.8740287 1162.232603 1153.89551 0.726547545 0.853888933 0.648325732 0.788010019 0.672654621 0.684050032 0.652369437 0.553667142 1.007225171 1 10.17229687 -13.52287875 0.119581299 2.051895319 0.526784953 0.835573429 0.058684567 26.51913845 0.229197332 6.724324882 0.275292807 3.00E-14 13.52287875 -1.525110366 SVS(ph)PVQDLDDDTPPS(ph)PAHSDMPYDAR ddPTM_HeLa_CUDC101_4h_R1 2 SVSPVQDLDDDTPPSPAHSDMPYDAR 26 0 G3V3A7;O00409-2;O00409 G3V3A7 FOXN3 Forkhead box protein N3 2 0 S(0.048)VS(0.929)PVQDLDDDT(0.023)PPS(0.999)PAHS(0.001)DMPYDAR;S(0.106)VS(0.717)PVQDLDDDT(0.177)PPS(0.998)PAHS(0.002)DMPYDAR ; 122.5 1.35E-09 12886000 1371.8 1295.11 1043.21 1070.1 1361.73 1100.86 1172.22 842.41 1403.27 1428.28 TRUE FALSE FALSE 1210.999684 1335.010804 1099.609088 1113.743303 1261.277891 1079.86293 1217.432918 938.3065493 1345.426617 1419.784527 0.852946106 0.940291135 0.77449012 0.784445303 0.888358668 0.760582264 0.85747724 0.660879543 0.947627327 1 10.47145628 -13.52287875 0.063067203 1.726466949 0.517335675 0.586119214 0.062827433 124.7339297 0.615681366 13.88355507 2.405729571 3.00E-14 13.52287875 -1.209131275 ATVPVAAATAAEGEGS(ph)PPAVAAVAGPPAAAEVGGGVGGSSR ddPTM_HeLa_CUDC101_4h_R1 1 ATVPVAAATAAEGEGSPPAVAAVAGPPAAAEVGGGVGGSSR 41 0 O75179-4;O75179-6;O75179-2;O75179;H0YLQ3;A0A1W2PQ15;O75179-5;O75179-3 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 ATVPVAAAT(0.025)AAEGEGS(0.975)PPAVAAVAGPPAAAEVGGGVGGSSR 54.393 0.0014098 23440000 609.43 494.55 720.51 484.9 621.76 344.45 482.99 426.93 687.18 760.68 TRUE FALSE FALSE 537.9935392 509.7864993 759.46295 504.6763179 575.8940035 337.8801901 501.6190861 475.5299855 658.8541495 756.1554415 0.711485377 0.674182147 1.004374112 0.667424038 0.76160796 0.446839594 0.663380912 0.628878613 0.871321045 1 9.562539027 -13.52287874 0.111279093 2.044072014 0.493828164 0.422787656 0.124767748 61.87540142 0.504755624 14.74822753 0.739429057 3.00E-14 13.52287874 -1.55024385 QAAHECS(ph)TSQK ddPTM_HeLa_CUDC101_4h_R1 1 QAAHECSTSQK 11 0 M0QZD8;Q6ZTK2 M0QZD8 Putative uncharacterized protein LOC400499 1 0 QAAHECS(0.876)T(0.099)S(0.024)QK 81.771 0.023365 20018000 7326.3 4506 6939.7 6790.2 7191.9 6229.6 6501.3 4109.3 7081.5 7780.8 TRUE FALSE FALSE 6467.52222 4644.824519 7314.881173 7067.133706 6661.367865 6110.780759 6752.057319 4577.086102 6789.597573 7734.519456 0.836189276 0.600531752 0.945744751 0.913713353 0.861251679 0.790065988 0.872976965 0.591773817 0.877830564 1 12.91709594 -13.52287874 0.182445549 1.846416089 0.767144419 0.127385723 0.120154584 51.3310922 0.593668274 15.33090736 0.149567492 3.00E-14 13.52287874 -1.07927167 KS(ph)PVGMLDLSSWSSPEVLR ddPTM_HeLa_CUDC101_4h_R1 2 KSPVGMLDLSSWSSPEVLR 19 1 O95613-2;O95613 O95613-2 PCNT Pericentrin 1 0 KS(1)PVGMLDLSSWSSPEVLR;KS(1)PVGMLDLSSWSSPEVLR ; 86.213 0.0024341 32423000 3005.5 2124.95 2408.9 2601.8 2894.3 2488.8 1886.2 1766.5 2779.8 3539.3 TRUE FALSE FALSE 2653.199846 2190.417191 2539.132421 2707.91265 2680.793255 2441.330287 1958.951366 1967.59122 2665.215467 3518.248086 0.754125287 0.622587475 0.721703632 0.769676437 0.761968227 0.693905099 0.556797394 0.55925312 0.757540515 1 11.7806415 -13.52287874 0.111969807 2.117695388 0.482734003 0.336672799 0.099031778 33.67337623 0.276081725 8.520963011 0.42002006 3.00E-14 13.52287874 -1.634961385 IKGSSPGIQDT(ph)LEAEDGAFETDEAPEDR ddPTM_HeLa_CUDC101_4h_R1 1 IKGSSPGIQDTLEAEDGAFETDEAPEDR 28 1 Q9UNX4 Q9UNX4 WDR3 WD repeat-containing protein 3 1 0 IKGS(0.032)S(0.032)PGIQDT(0.911)LEAEDGAFET(0.025)DEAPEDR 55.789 0.0013976 0 587.11 527.39 529.06 461.84 611.6 621.43 478.58 546.25 674.56 449.03 TRUE FALSE FALSE 518.2898558 543.6382608 557.6625839 480.6758314 566.4834865 609.5772581 497.0389909 608.432892 646.7543513 446.3591496 1.161149842 1.2179391 1.249358469 1.076881323 1.269120364 1.365665426 1.113540501 1.363101647 1.448955067 1 8.802061189 -13.52287874 0.104908114 0.196000806 1.384547004 0 0.165231016 57.65191323 0.447985945 9.902516818 0.581283415 3.00E-14 13.52287874 1.188546198 VPEASSEPFDTSS(ph)PQAGR ddPTM_HeLa_CUDC101_4h_R1 1 VPEASSEPFDTSSPQAGR 18 0 H0Y6F5;Q9H4I2 H0Y6F5 ZHX3 Zinc fingers and homeoboxes protein 3 1 0 VPEASSEPFDTS(0.079)S(0.92)PQAGR 224.36 3.90E-33 50836000 1208.6 1244.7 899.09 957.02 1034.4 1190.6 939.41 1154.9 1158.7 960.28 TRUE FALSE FALSE 1066.92974 1283.047732 947.697525 996.0514122 958.0943728 1167.891289 975.6433584 1286.369148 1110.937896 954.5682119 1.117709271 1.344113198 0.992802309 1.043457555 1.003693985 1.223475991 1.022078199 1.347592693 1.163811954 1 9.898704484 -13.52287874 0.217639721 0.309996981 1.146720515 0 0.136201097 73.5969856 0.928187254 21.48917139 0.100891208 3.00E-14 13.52287874 0.836723535 LPEASQS(ph)PLVLK ddPTM_HeLa_CUDC101_4h_R1 2 LPEASQSPLVLK 12 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 LPEAS(0.001)QS(0.999)PLVLK;LPEAS(0.084)QS(0.916)PLVLK ; 179.55 1.11E-07 81896000 3129 3033.2 2735.9 2917.2 3047.7 2920.9 2568.72 2511 3278.5 3266.2 TRUE FALSE FALSE 2762.223363 3126.649297 2883.81103 3036.176025 2822.877243 2865.188699 2667.796391 2796.84209 3143.358842 3246.772497 0.850759752 0.963002274 0.888208531 0.935136671 0.869441036 0.882472887 0.821676417 0.861422256 0.968148783 1 11.66479058 -13.52287874 0.284633949 1.947489492 0.871157706 0.515405046 0.038829679 25.98371419 0.351035792 14.0284298 0.018443785 3.00E-14 13.52287874 -1.076331786 LPLS(ph)PPLVEDSAFEPSRK ddPTM_HeLa_CUDC101_4h_R1 2 LPLSPPLVEDSAFEPSRK 18 1 O96007 O96007 MOCS2 Molybdopterin synthase catalytic subunit 1 0 LPLS(1)PPLVEDSAFEPSRK;LPLS(1)PPLVEDSAFEPSRK ; 127.83 0.00014536 136083000 8246.6 7280.4 6630.3 6769.4 8171 7102.5 6576 5775.1 7389.5 8452.7 TRUE FALSE FALSE 7279.946049 7504.700495 6988.754074 7045.485392 7568.241609 6967.031646 6829.638523 6432.51404 7084.901682 8402.422964 0.866410329 0.893159095 0.831754614 0.838506395 0.900721333 0.829169357 0.812817749 0.765554658 0.843197458 1 13.0365897 -13.52287874 0.118730211 1.55118377 0.753707465 0.120426374 0.056273353 26.13217901 0.224580097 3.437600893 0.143667938 3.00E-14 13.52287874 -0.797476305 DAPAGS(ph)PPASPGPQGPSTK ddPTM_HeLa_CUDC101_4h_R1 2 DAPAGSPPASPGPQGPSTK 19 0 A0A0A0MRX4;Q3MIN7;Q3MIN7-2 A0A0A0MRX4 RGL3 Ral guanine nucleotide dissociation stimulator-like 3 1 0 DAPAGS(0.973)PPAS(0.027)PGPQGPSTK;DAPAGS(0.624)PPAS(0.375)PGPQGPSTK ; 114.1 0.00019134 16670900 4016 3312.6 3559.3 3681.2 3719.2 3265.6 2774.8 2926.4 4047.5 4297.4 TRUE FALSE FALSE 3545.250568 3414.65728 3751.726524 3831.335248 3444.842026 3203.314121 2881.824965 3259.529547 3880.660337 4271.838874 0.829912053 0.79934131 0.878246262 0.896881966 0.806407294 0.74986773 0.67460994 0.763027268 0.908428537 1 12.06064152 -13.52287874 0.053181456 1.859284207 0.381424212 0.638754313 0.053216944 146.4531186 0.615365748 17.70547248 4.006882389 3.00E-14 13.52287874 -1.477859994 T(ph)WRAQRMSQT(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 TWRAQRMSQTR 11 2 Q4VXF1;A6NL05 Q4VXF1 FAM74A3;FAM74A7 Putative protein FAM74A3;Protein FAM74A7 2 0 T(0.992)WRAQRMS(0.017)QT(0.991)R 59.68 0.040446 21017000 3264.2 2986.6 2576.1 2674.6 3135.1 2700.2 2255.1 2561.5 3052.7 3605.9 TRUE FALSE FALSE 2881.575424 3078.613606 2715.371758 2783.681749 2903.829919 2648.698184 2342.079962 2853.090806 2926.866414 3584.451946 0.803909626 0.858879866 0.757541682 0.776598986 0.810118245 0.73894091 0.653399738 0.795962911 0.816545028 1 11.80753684 -13.52287874 0.140440373 1.857787393 0.677103817 0.259840216 0.072711774 20.42781405 0.199410059 4.82249335 0.120328557 3.00E-14 13.52287874 -1.180683576 GSDS(ph)DSEGDNPEKK ddPTM_HeLa_CUDC101_4h_R1 1 GSDSDSEGDNPEKK 14 1 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 1 0 GS(0.061)DS(0.899)DS(0.04)EGDNPEKK 69.379 0.025408 10416000 2926.3 1317.2 2941.9 3195.5 2034.1 1751 1835.2 975.08 2818.8 4291.1 TRUE FALSE FALSE 2583.28355 1357.781371 3100.948013 3325.826302 1884.048495 1717.602592 1905.984279 1086.079166 2702.607871 4265.576346 0.605611842 0.318311351 0.726970463 0.779689784 0.441686736 0.402666006 0.44682925 0.25461487 0.633585629 1 12.05852497 -13.52287874 0.10237732 2.729257469 0.133789935 0.317934698 0.181026494 52.12670288 0.39685463 19.06762688 1.19226688 3.00E-14 13.52287874 -2.595467534 GGAAGGALPT(ph)SPGPALGAK ddPTM_HeLa_CUDC101_4h_R1 1 GGAAGGALPTSPGPALGAK 19 0 Q9UPR0 Q9UPR0 PLCL2 Inactive phospholipase C-like protein 2 1 0 GGAAGGALPT(0.959)S(0.041)PGPALGAK 128.73 5.35E-06 0 4263.3 3788.9 4105.2 3746.6 3635.9 3466.9 3191.3 3291.5 4608.4 4633.1 TRUE FALSE FALSE 3763.562437 3905.631518 4327.13953 3899.402542 3367.686901 3400.774659 3314.38951 3666.191055 4418.439801 4605.542115 0.817181201 0.848028619 0.939550529 0.846676123 0.731224863 0.738409198 0.719652416 0.796038982 0.95937453 1 12.16915527 -13.52287874 0.096638307 1.677693274 0.636684169 0.689253 0.052576919 56.8485616 0.412120059 7.871283872 0.568615325 3.00E-14 13.52287874 -1.041009105 AALLELWELRR ddPTM_HeLa_CUDC101_4h_R1 2 AALLELWELRR 11 1 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 185.08 1.06E-10 12016100 4048.2 3733 3064.3 3640.7 3524.6 3332 3382.5 3104.9 3668.5 2614.9 FALSE FALSE TRUE 3573.676133 3848.009305 3229.965327 3789.183482 3264.59728 3268.447651 3512.964158 3458.349266 3517.282877 2599.346459 1.374836402 1.480375689 1.242606701 1.457744684 1.255930032 1.257411316 1.351479772 1.330468762 1.353141235 1 11.34393322 -9.185941391 0.875143417 0.994494837 1.343497888 0 0.131759397 0.244599891 0.329727852 0.05556894 0.014844072 6.52E-10 9.185941391 0.349003051 AALLNQHYQVNFK ddPTM_HeLa_CUDC101_4h_R1 2 AALLNQHYQVNFK 13 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 0 ; ; 123.67 0.001693 1281890 548.706 370.73 616.35 435.35 586.25 627.97 624.98 526.69 467.26 512.41 FALSE FALSE TRUE 484.3875145 382.1517519 649.6717454 453.1054547 543.0035055 615.9925185 649.085688 586.6462606 447.999345 509.3621625 0.95096878 0.750255476 1.275461338 0.8895546 1.066046019 1.209340944 1.274310767 1.151727207 0.879530083 1 8.992547984 -5.394697089 3.188064664 0.976667007 1.219640396 0.430499628 0.129356641 0.174742367 3.331376803 0.016861738 0.040896618 4.03E-06 5.394697089 0.242973389 GRASS(ph)HSSQTQGGGSVTK ddPTM_HeLa_CUDC101_4h_R1 2 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 GRAS(0.378)S(0.611)HS(0.006)S(0.002)QT(0.003)QGGGSVTK;GRAS(0.089)S(0.867)HS(0.041)S(0.002)QTQGGGSVTK ; 123.58 4.64E-05 6136700 1160.44 614.17 1328.89 1242.38 966.75 925.68 950.44 175.08 1576.8 1956.72 TRUE FALSE FALSE 1024.414982 633.0918497 1400.733813 1293.049626 895.4347785 908.0241963 987.0987892 195.0103995 1511.803637 1945.081342 0.526669482 0.325483483 0.720141509 0.664779204 0.460358525 0.466830963 0.507484581 0.100258223 0.777244429 1 10.92561477 -13.52287874 0.158206587 3.040613913 0.314629398 0.509522723 0.166616332 29.47045076 0.312349474 18.56120477 0.308466629 3.00E-14 13.52287874 -2.725984515 KTSFDQDS(ph)DVDIFPSDFPTEPPSLPR ddPTM_HeLa_CUDC101_4h_R1 2 KTSFDQDSDVDIFPSDFPTEPPSLPR 26 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 0 KT(0.007)S(0.007)FDQDS(0.985)DVDIFPSDFPTEPPSLPR;KT(0.013)S(0.004)FDQDS(0.983)DVDIFPSDFPTEPPSLPR ; 108.79 8.28E-08 458188300 6939.8 5638.5 6259.7 5554.3 5800.2 6794.1 6360.4 5226.3 4759.4 5741.1 TRUE FALSE FALSE 6126.327164 5812.215502 6598.118317 5780.828362 5372.330802 6664.513862 6605.722759 5821.240867 4563.215518 5706.951682 1.073485024 1.018444842 1.156154579 1.012945033 0.941366092 1.167788731 1.157487066 1.02002631 0.799588953 1 12.47850463 -13.52287874 0.18050885 0.694574208 1.088743258 0.220267712 0.094772062 88.53286248 1.017745259 9.525119927 0.096880118 3.00E-14 13.52287874 0.39416905 ARVS(ph)SGYVPPPVATPFSSK ddPTM_HeLa_CUDC101_4h_R1 1 ARVSSGYVPPPVATPFSSK 19 1 Q15942-2;Q15942;H7C3R3 Q15942-2 ZYX Zyxin 1 0 ARVS(0.842)S(0.121)GY(0.037)VPPPVATPFSSK 71.54 0.0071331 40393000 1341.9 1280.9 1442.3 1405.5 1710.9 1501.5 1341.7 614.06 1218 1594.3 TRUE FALSE FALSE 1184.604516 1320.363011 1520.275101 1462.822365 1584.690316 1472.861389 1393.449818 683.9621083 1167.793524 1584.817033 0.747470838 0.833132774 0.959274837 0.923022869 0.999920043 0.92935737 0.879249648 0.431571654 0.73686331 1 10.63010058 -13.52287874 0.019502422 2.011052958 1.65E-12 0.031206431 0.161048187 5622.824403 8.844918405 599.599014 345.4344022 3.00E-14 13.52287874 -2.011052958 AALSEEELEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 AALSEEELEKK 11 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 1 AALSEEELEK(1)K 197.06 1.38E-08 1083700 245.37 95.8 184.36 202.12 223.48 203.12 272.93 292.43 282.74 296.94 FALSE TRUE FALSE 216.6081006 98.75148445 194.3270593 210.3633272 206.9943256 199.2458244 283.4570015 325.7190492 271.0853375 295.1737877 0.733832439 0.334553706 0.658347954 0.712676179 0.701262559 0.675011918 0.960305465 1.103482297 0.918392313 1 8.205420801 -4.554001102 4.758329606 0.783454666 1.075940178 0.29932976 0.175944154 0.217349647 11.79553296 0.029817693 0.131616538 2.79E-05 4.554001102 0.292485512 T(ph)YSDEANQMR ddPTM_HeLa_CUDC101_4h_R1 2 TYSDEANQMR 10 0 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5;Q9BXF6 RAB11FIP5 Rab11 family-interacting protein 5 1 0 T(0.956)YS(0.044)DEANQMR;T(0.999)YS(0.001)DEANQMR ; 147.58 0.0031379 123314000 4580.6 3667.7 3846 3877.9 4720.8 3786.5 3873.5 3832.5 4443.3 3813.3 TRUE FALSE FALSE 4043.669012 3780.69749 4053.926394 4036.057524 4372.555989 3714.278821 4022.902193 4268.776309 4260.145293 3790.618322 1.066757101 0.997382793 1.069463093 1.06474912 1.153520512 0.979860937 1.061278623 1.126142478 1.123865536 1 11.88821748 -13.52287874 0.162204988 0.746021592 1.084736943 0 0.060982223 70.18919154 0.756089793 5.666106217 0.086096792 3.00E-14 13.52287874 0.338715351 ENQSEGKGS(ph)DSDSEGDNPEK ddPTM_HeLa_CUDC101_4h_R1 1 ENQSEGKGSDSDSEGDNPEK 20 1 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 1 0 ENQS(0.001)EGKGS(0.861)DS(0.132)DS(0.005)EGDNPEK 103.51 0.00024576 58906000 2703.2 2002.1 2346.1 2187.2 2699.2 1958.1 2172.6 1786.1 2503.6 2687.5 TRUE FALSE FALSE 2386.334994 2063.782328 2472.937263 2276.40347 2500.085394 1920.752505 2256.39791 1989.422404 2400.400548 2671.51463 0.893251703 0.772513953 0.92566862 0.852102191 0.935830695 0.718975102 0.84461372 0.744679584 0.898516714 1 11.3834422 -13.52287874 0.031610425 2.052289705 0.147949537 0.33948357 0.069615876 528.9828133 1.341602281 62.75800129 25.74573347 3.00E-14 13.52287874 -1.904340168 GAANASGS(ph)SPDAPAK ddPTM_HeLa_CUDC101_4h_R1 2 GAANASGSSPDAPAK 15 0 E7EPJ7;O75962-5;O75962-4;O75962 E7EPJ7 TRIO Triple functional domain protein 1 0 GAANAS(0.001)GS(0.5)S(0.5)PDAPAK;GAANAS(0.244)GS(0.512)S(0.244)PDAPAK ; 216.71 3.05E-24 38536000 15099.5 12436.1 13314.8 13025.5 12447.6 12164 11779.6 9930.1 13442.2 16077.6 TRUE FALSE FALSE 13329.5595 12819.2415 14034.63836 13556.73619 11529.36535 11931.99197 12233.94312 11060.50245 12888.10683 15981.96972 0.834037339 0.802106482 0.878154483 0.848251901 0.721398272 0.746590826 0.765484063 0.692061281 0.80641542 1 13.96415761 -13.52287874 0.069700128 1.817091762 0.484666945 0.315943886 0.069504168 59.50927075 0.32231548 7.881282225 1.144271761 3.00E-14 13.52287874 -1.332424818 AANGVVLATEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AANGVVLATEKK 12 1 P25787;A0A024RA52 P25787 PSMA2 Proteasome subunit alpha type-2;Proteasome subunit alpha type 0 1 ; AANGVVLATEK(1)K;AANGVVLATEK(1)K 193.3 5.50E-09 1928450 2044.43 862.39 797.41 931.14 2268.8 1541.88 2029.84 1788.85 1376.07 761.9 FALSE TRUE FALSE 1804.785015 888.9592137 840.5203966 969.1159139 2101.435144 1512.471208 2108.131609 1992.485453 1319.347812 757.3681849 2.382969143 1.173747764 1.109791002 1.279583607 2.774654634 1.997009167 2.78349639 2.630801627 1.742016417 1 9.564851008 -1 0.062724584 7.99E-16 6.328113171 0.330887303 0.560339575 282.4817273 1.33326179 26.70481849 162.4893399 0.1 1 6.328113171 T(ph)PPRWAEDQNSLLK ddPTM_HeLa_CUDC101_4h_R1 1 TPPRWAEDQNSLLK 14 1 P49792;A6NKT7;J3KNE0;Q7Z3J3 P49792 RANBP2;RGPD3;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 1 0 T(1)PPRWAEDQNSLLK 85.576 0.022698 53561000 2856.9 2434.1 2222.5 2231.5 2917.8 2666.6 2366.2 2316.9 2668.3 2262.5 TRUE FALSE FALSE 2522.018513 2509.091736 2342.655073 2322.510215 2702.559707 2615.739048 2457.465127 2580.646531 2558.311545 2249.042549 1.121374299 1.115626619 1.041623278 1.032666197 1.20164899 1.163045603 1.092671691 1.147442289 1.137511402 1 11.13509524 -13.52287874 0.202355366 0.442089408 1.137067166 0 0.06425879 35.60926068 0.434741745 7.840071473 0.05027476 3.00E-14 13.52287874 0.694977758 SEDES(ph)ET(ph)EDEEEKSQEDQEQK ddPTM_HeLa_CUDC101_4h_R1 2 SEDESETEDEEEKSQEDQEQK 21 1 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 2 0 S(0.02)EDES(0.99)ET(0.99)EDEEEKS(0.001)QEDQEQK;S(0.011)EDES(0.989)ET(0.991)EDEEEKS(0.009)QEDQEQK ; 67.645 0.0093731 266574000 7178.5 5996.2 5835.9 6325.6 6204.6 6295.3 5319.6 4851.3 6501.1 7342 TRUE FALSE FALSE 6337.047112 6180.935815 6151.406407 6583.58531 5746.899019 6175.227641 5524.778754 5403.552382 6233.121906 7298.329457 0.868287346 0.846897341 0.842851291 0.902067432 0.787426637 0.846115221 0.756992239 0.740382085 0.854047757 1 12.83335056 -13.52287874 0.039078164 1.948328018 0.262500724 0.414831653 0.054046595 176.8091786 0.551880012 20.45124298 6.816930289 3.00E-14 13.52287874 -1.685827295 ETDSPST(ph)PGKDQR ddPTM_HeLa_CUDC101_4h_R1 1 ETDSPSTPGKDQR 13 1 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 0 ETDSPS(0.044)T(0.956)PGKDQR 149.32 0.0064343 4403600 2137.8 1769.9 1961.7 1983.3 1996.3 1699.8 1918.6 1637.4 2367.7 2117.1 TRUE FALSE FALSE 1887.210325 1824.428521 2067.755436 2064.187547 1849.036926 1667.379147 1992.601045 1823.794997 2270.102404 2104.507395 0.896746825 0.866914759 0.98253655 0.980841194 0.878607949 0.792289517 0.946825395 0.866613727 1.078685876 1 11.03926686 -13.52287874 0.208017103 1.493285758 0.884020541 0.445779147 0.05924625 45.85837743 0.567133457 9.180469954 0.052395772 3.00E-14 13.52287874 -0.609265217 VKTEQQESDSVQCMPVAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 VKTEQQESDSVQCMPVAKR 19 2 Q96RE7 Q96RE7 NACC1 Nucleus accumbens-associated protein 1 0 1 ; VKTEQQESDSVQCMPVAK(1)R;VKTEQQESDSVQCMPVAK(1)R 187.5 9.54E-33 0 607.48 1066.6 1082.22 1127.86 1365.21 1329.23 1133.07 1462.97 930.32 599.76 FALSE TRUE FALSE 536.2721153 1099.460682 1140.728087 1173.859006 1264.501178 1303.877152 1176.772889 1629.508591 891.9718158 596.1926008 0.899494751 1.844136744 1.913354988 1.968925821 2.120960871 2.187006599 1.973813308 2.733191571 1.496113529 1 9.21963466 -7.113355705 2.331673985 0.946217555 2.139282503 0.71122473 0.281216752 0.071986106 0.757982398 0.037208864 0.046571943 7.70E-08 7.113355705 1.193064948 up APS(ph)PLGPTR ddPTM_HeLa_CUDC101_4h_R1 1 APSPLGPTR 9 0 I3L2L9;E7EVV8;Q0VG06-3;Q0VG06 I3L2L9 C17orf70;FAAP100 Fanconi anemia-associated protein of 100 kDa 1 0 APS(1)PLGPTR 83.081 0.038428 26198000 2995.9 2790.7 2679.3 2152.4 2374.9 2724.9 1979.2 1803.1 2893.7 3927.3 TRUE FALSE FALSE 2644.725143 2876.678159 2824.151062 2240.184175 2199.708358 2672.927072 2055.538407 2008.357616 2774.420461 3903.940245 0.677450211 0.736865315 0.723410423 0.573826451 0.563458511 0.684674177 0.526529167 0.514443739 0.710671856 1 11.93071526 -13.52287874 0.129149345 2.358017725 0.441124719 0.402828217 0.104686064 17.92899757 0.164480136 6.231577146 0.202783341 3.00E-14 13.52287874 -1.916893006 SDVYYFS(ph)PSGK ddPTM_HeLa_CUDC101_4h_R1 1 SDVYYFSPSGK 11 0 X6RBL6;Q9UBB5-3;Q9UBB5 X6RBL6 MBD2 Methyl-CpG-binding domain protein 2 1 0 SDVYYFS(0.838)PS(0.162)GK 111.39 0.0065945 9659400 1456.3 1304.4 1101.1 1086.6 1247.1 1369.9 1091.3 495.19 1377.3 1926.6 TRUE FALSE FALSE 1285.594722 1344.587018 1160.628797 1130.916245 1155.103918 1343.77144 1133.391807 551.560428 1320.527111 1915.140498 0.671279587 0.702082703 0.606028016 0.590513462 0.603143174 0.701656845 0.591806088 0.287999982 0.689519705 1 10.90323452 -13.52287874 0.108942384 2.392371672 0.334142555 0.370044983 0.130823015 35.55811918 0.285073639 11.00200387 0.584320845 3.00E-14 13.52287874 -2.058229117 (ac)MEVAEPS(ph)SPTEEEEEEEEHSAEPRPR ddPTM_HeLa_CUDC101_4h_R1 5 MEVAEPSSPTEEEEEEEEHSAEPRPR 26 1 M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8;M0R3H9 M0QXG9 BABAM1 BRISC and BRCA1-A complex member 1 1 0 MEVAEPS(0.433)S(0.433)PT(0.134)EEEEEEEEHSAEPRPR;MEVAEPS(0.435)S(0.435)PT(0.129)EEEEEEEEHSAEPRPR;MEVAEPS(0.333)S(0.333)PT(0.333)EEEEEEEEHSAEPRPR;MEVAEPS(0.333)S(0.333)PT(0.333)EEEEEEEEHSAEPRPR;MEVAEPS(0.358)S(0.358)PT(0.283)EEEEEEEEHSAEPRPR ;;;; 87.729 4.93E-08 230766000 343.213 367.201 396.43 291.24 306.117 228.82 67.161 245.89 388.17 656.26 TRUE FALSE FALSE 302.9820924 378.5140276 417.8622049 303.118026 283.5353588 224.4556397 69.75142227 273.8811237 372.1694683 652.3565363 0.464442487 0.580225699 0.640542681 0.464650861 0.43463251 0.344068967 0.10692224 0.419833494 0.570500099 1 9.349516855 -13.52287874 0.129726258 3.043987741 0.14378785 0.398862059 0.16864651 25.28764292 0.232773726 13.36599359 0.429024031 3.00E-14 13.52287874 -2.900199891 SSRS(ph)GPSET(ph)SHRPRT ddPTM_HeLa_CUDC101_4h_R1 1 SSRSGPSETSHRPRT 15 3 D6RII0;Q8WU39-2 D6RII0 MZB1 2 0 S(0.005)S(0.007)RS(0.988)GPS(0.054)ET(0.501)S(0.364)HRPRT(0.081) 90.853 0.0161 59425000 4412.1 3542.4 4151.9 4022.9 3121.1 3524.8 3502.9 2983.2 4245.2 4711.3 TRUE FALSE FALSE 3894.920326 3651.537145 4376.364273 4186.97125 2890.862671 3457.570313 3638.008026 3322.795429 4070.211059 4683.276978 0.831665593 0.779697029 0.934466249 0.894025972 0.617273479 0.738280125 0.776808214 0.709502224 0.86909467 1 12.19330265 -13.52287874 0.069312458 1.82791824 0.476843107 0.395296593 0.084027821 118.9066111 0.640721393 15.89757906 2.332008053 3.00E-14 13.52287874 -1.351075132 AGGSPAPGPETPAIS(ph)PSKR ddPTM_HeLa_CUDC101_4h_R1 2 AGGSPAPGPETPAISPSKR 19 1 P33316;H0YKI0 P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 AGGSPAPGPET(0.007)PAIS(0.497)PS(0.497)KR;AGGSPAPGPETPAIS(0.989)PS(0.011)KR ; 247.3 4.57E-56 86454000 6026.6 5132.8 5281.2 5065.4 5156.1 5424.5 4621.9 5762.7 4815.2 4883.9 TRUE FALSE FALSE 5320.171084 5290.935484 5566.717647 5271.988907 4775.744775 5321.0367 4800.168231 6418.702474 4616.715418 4854.850346 1.095846567 1.089824631 1.146630123 1.085922023 0.983705868 1.096024866 0.988736601 1.322121593 0.950949069 1 12.24521111 -13.52287874 0.21976957 0.492292529 1.108324696 0.238977783 0.089047893 68.44980177 0.866697186 14.90752072 0.067061111 3.00E-14 13.52287874 0.616032166 ELFQT(ph)PDHTEESTTDDK ddPTM_HeLa_CUDC101_4h_R1 1 ELFQTPDHTEESTTDDK 17 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(0.675)PDHT(0.325)EESTTDDK 144.3 0.00083554 6538800 1669.9 1145.2 1416.9 1151.8 1339.8 1342.2 1083.7 430.52 1363 2488.5 TRUE FALSE FALSE 1474.156853 1180.482255 1493.5019 1198.775383 1240.965623 1316.599771 1125.498672 479.5286566 1306.816563 2473.698291 0.595932357 0.477213514 0.60375265 0.484608566 0.501664098 0.532239431 0.454986235 0.193850907 0.52828454 1 11.27245384 -13.52287874 0.119255455 2.833656786 0.197970243 0.187520262 0.169698688 21.52512609 0.185634703 9.404101589 0.388053371 3.00E-14 13.52287874 -2.635686542 S(ph)ATEEVR ddPTM_HeLa_CUDC101_4h_R1 1 SATEEVR 7 0 E5RJK7;E5RG38 E5RJK7 LYRM2 1 0 S(0.958)AT(0.042)EEVR 86.833 0.03704 22081000 5164.6 1821.1 4781.1 5265.5 3391.3 3092.9 4162.4 1688.4 6092 6270.4 TRUE FALSE FALSE 4559.213417 1877.205932 5039.580728 5480.249849 3141.130555 3033.908086 4322.945162 1880.600631 5840.885181 6233.103382 0.731451596 0.301167142 0.808518714 0.879216903 0.503943279 0.486741178 0.6935462 0.301711766 0.937074973 1 12.60573493 -13.52287874 0.089132929 2.4542432 0.218740053 0.44119036 0.180035214 95.34193225 0.644406352 26.22402015 2.293383901 3.00E-14 13.52287874 -2.235503147 RNS(ph)SSSSSPSERPR ddPTM_HeLa_CUDC101_4h_R1 3 RNSSSSSSPSERPR 14 2 B7WPE2;Q32P44;G3V1D0;H0Y3M3;Q32P44-2 B7WPE2 EML3 Echinoderm microtubule-associated protein-like 3 1 0 RNS(0.992)S(0.008)SSSSPSERPR;RNS(0.943)S(0.048)S(0.008)S(0.001)SSPSERPR;RNS(0.997)S(0.003)SSSSPSERPR ;; 133.87 0.00059653 5912100 293.129 0 247.769 464.03 180.181 169.22 264.256 0 230.94 476.03 TRUE FALSE FALSE 258.768863 0 261.1641416 482.9551491 166.8894066 165.9924104 274.4484424 0 221.4205555 473.1985524 0.546850496 0 0.551912385 1.020618399 0.35268368 0.350788077 0.579985803 0 0.467923146 1 8.88630185 -13.52287874 0.167314699 3.327225263 0.290614593 0 0.329133559 47.41589978 0.520900312 35.67752406 0.48396653 3.00E-14 13.52287874 -3.03661067 RS(ph)PASIDR ddPTM_HeLa_CUDC101_4h_R1 1 RSPASIDR 8 1 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 RS(1)PASIDR 82.489 0.020924 22298000 1259.6 1052.6 1283.9 1741.4 1194.3 1189.2 1060.9 754.16 1423.2 1622.5 TRUE FALSE FALSE 1111.951597 1085.029358 1353.311518 1812.421819 1106.198868 1166.517991 1101.819268 840.010526 1364.535094 1612.849298 0.689433042 0.672740695 0.839081196 1.1237391 0.685866231 0.723265337 0.683150788 0.52082394 0.846040046 1 10.65539593 -13.52287874 0.283125056 3.021553681 0.723305958 0.141844472 0.155762521 46.95572265 0.634092235 53.74138977 0.072604031 3.00E-14 13.52287874 -2.298247722 AAQASDLEK(ac)IHLDEK ddPTM_HeLa_CUDC101_4h_R1 1 AAQASDLEKIHLDEK 15 1 P37837 P37837 TALDO1 Transaldolase 0 1 AAQASDLEK(1)IHLDEK 120.77 0.0077514 1678700 1477.6 988.39 1105.6 1201.3 1098.8 1220 1119.1 1308.8 1261.1 1274.5 FALSE TRUE FALSE 1304.397968 1018.841124 1165.37208 1250.294206 1017.743713 1196.730533 1162.264062 1457.788502 1209.116924 1266.919217 1.029582589 0.804187915 0.919847189 0.986877608 0.803321711 0.944598927 0.917393979 1.150656239 0.954375707 1 10.30710882 AAQEEYVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 AAQEEYVKR 9 1 P04075;H3BQN4;J3KPS3;P04075-2;H3BR68 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 1 AAQEEYVK(1)R 94.409 0.018188 37630000 4236.5 1956.3 1674.6 1465.6 4052.4 3432.3 4542.4 3228.8 3762.7 2305.7 FALSE TRUE FALSE 3739.903892 2016.571284 1765.133941 1525.373503 3753.462526 3366.834596 4717.60189 3596.353541 3607.599913 2291.985594 1.631730977 0.879835933 0.770133087 0.665524909 1.637646648 1.468959755 2.058303465 1.56909954 1.574006365 1 11.16238226 -5.556148291 24.95394235 1.185415466 1.704500162 0.416357398 0.334618171 172.8456702 129643.0179 0.055738394 0.111477276 2.78E-06 5.556148291 0.519084696 AAQEEYVKR ddPTM_HeLa_CUDC101_4h_R1 1 AAQEEYVKR 9 1 P04075;H3BQN4;J3KPS3;P04075-2;H3BR68 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 99.688 0.018858 18873000 2742.9 2342.6 2747.7 2612 2992.3 2533.3 2522.4 2266.7 2652.5 2467.7 FALSE FALSE TRUE 2421.38142 2414.772729 2896.248973 2718.52865 2771.563991 2484.981523 2619.689813 2524.731966 2543.162827 2453.022011 0.987101383 0.984407282 1.180686093 1.10823655 1.129856959 1.013028629 1.067943867 1.029233311 1.036746844 1 11.26034446 -6.815021543 24.99999883 0.993026078 1.086637771 0.438875733 0.047235684 57.86277198 26996.94219 0.007369248 0.009685094 1.53E-07 6.815021543 0.093611693 IS(ph)DSESEDPPR ddPTM_HeLa_CUDC101_4h_R1 2 ISDSESEDPPR 11 0 Q96ST2-3;Q96ST2;B8ZZB6 Q96ST2-3 IWS1 Protein IWS1 homolog 1 0 IS(0.921)DS(0.078)ES(0.002)EDPPR;IS(0.682)DS(0.191)ES(0.127)EDPPR ; 182.41 1.35E-10 54680000 11343.7 10580.7 10012.7 9586.8 9147.1 9213.3 7447.2 6358.3 13598.8 14417.5 TRUE FALSE FALSE 10014.00868 10906.67883 10554.01685 9977.791142 8472.336657 9037.571653 7734.440999 7082.103171 13038.25171 14331.74407 0.698729243 0.761015461 0.736408409 0.696202158 0.591158802 0.630598175 0.539672001 0.494155013 0.90974634 1 13.80692657 -13.52287874 0.073529391 2.312725079 0.18197405 0.907443408 0.045478792 39.92764218 0.227133516 8.831248305 1.158741732 3.00E-14 13.52287874 -2.13075103 AAQK(ac)TLLVSTSAVDNNEAQKK ddPTM_HeLa_CUDC101_4h_R1 2 AAQKTLLVSTSAVDNNEAQKK 21 2 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 0 1 ; AAQK(1)TLLVSTSAVDNNEAQKK;AAQK(1)TLLVSTSAVDNNEAQKK 248.23 3.17E-59 3911040 799.18 669.31 776.35 772.36 991.41 643.77 656.41 410.17 934.91 1099.1 FALSE TRUE FALSE 705.5013319 689.9306478 818.3218293 803.8601792 918.2756595 631.4911598 681.7279536 456.8620948 896.3726141 1092.562504 0.645730866 0.631479339 0.748993148 0.735756697 0.840478834 0.577990877 0.623971581 0.418156484 0.820431427 1 10.0935001 -13.52287875 0.201526081 2.653229238 0.591909009 0.423795149 0.116482455 25.71279955 0.313299389 16.7004603 0.108946877 3.00E-14 13.52287875 -2.061320229 S(ph)PRPTGSDLLPGAPILSLR ddPTM_HeLa_CUDC101_4h_R1 1 SPRPTGSDLLPGAPILSLR 19 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 S(0.999)PRPTGSDLLPGAPILSLR 136.77 2.69E-05 50852000 1440.7 1286.8 1297.4 1417.4 1188.1 1306.1 1143.3 999.73 1624.5 1669.9 TRUE FALSE FALSE 1271.82333 1326.444783 1367.541368 1475.207699 1100.45623 1281.188319 1187.397464 1113.535222 1557.537422 1659.967361 0.766173697 0.799078834 0.8238363 0.88869681 0.662938475 0.771815368 0.715313742 0.670817541 0.938294005 1 10.69693916 -13.52287874 0.162940701 1.944887583 0.689171124 0.678952171 0.059966878 24.31647254 0.262702467 7.318598864 0.109396781 3.00E-14 13.52287874 -1.255716459 S(ph)GLSLEELR ddPTM_HeLa_CUDC101_4h_R1 1 SGLSLEELR 9 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 S(0.941)GLS(0.059)LEELR 115.23 0.0076288 37386000 3583.2 3218.2 3119.4 2931.8 3597.8 3458.2 3115.2 3110.3 3502.9 2910.4 TRUE FALSE FALSE 3163.182728 3317.348927 3288.0442 3051.371476 3332.397462 3392.240597 3235.354308 3464.36398 3358.508979 2893.088811 1.093358322 1.146646074 1.136516856 1.054710614 1.15184762 1.172532479 1.118304524 1.197462023 1.160873101 1 11.4983949 -13.52287874 0.101571026 0.524842829 1.232749281 0 0.061078532 42.56127762 0.321880376 4.212260902 0.268756871 3.00E-14 13.52287874 0.707906452 NETSFLPAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 NETSFLPAKK 10 1 F8WAJ0;Q9H8H2-3;Q9H8H2-4;Q9H8H2-2;Q9H8H2 F8WAJ0 DDX31 Probable ATP-dependent RNA helicase DDX31 0 1 ; NETSFLPAK(1)K;NETSFLPAK(1)K 169.99 0.00098132 4506700 2531.12 3065.2 3498.9 4289.3 4641.2 4508.8 3872.5 4737.1 1285.37 1267.12 FALSE TRUE FALSE 2234.425951 3159.635179 3688.061118 4464.236194 4298.827923 4422.802152 4021.863622 5276.352316 1232.386505 1259.583114 1.773940859 2.508476927 2.928001397 3.544217245 3.412897391 3.511322201 3.193011702 4.188967173 0.978408246 1 10.29873061 -7.077774516 0.65848998 1.141864744 3.688002831 0.940632464 0.257159201 0.1023294 0.093723554 0.069596691 0.09454826 8.36E-08 7.077774516 2.546138087 up MS(ph)GGSTMSSGGGNTNNSNSK ddPTM_HeLa_CUDC101_4h_R1 6 MSGGSTMSSGGGNTNNSNSK 20 0 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 MS(0.998)GGS(0.002)TMSSGGGNTNNSNSK;MS(0.994)GGS(0.003)T(0.003)MSSGGGNTNNSNSK;MS(0.995)GGS(0.004)TMS(0.001)SGGGNTNNSNSK;MS(0.993)GGS(0.007)TMSSGGGNTNNSNSK;MS(0.723)GGS(0.032)T(0.243)MS(0.002)SGGGNTNNSNSK;MS(0.35)GGS(0.321)T(0.321)MS(0.003)S(0.003)GGGNT(0.002)NNSNSK ;;;;; 224.99 9.59E-34 42952820 8471.42 7600.53 7511.41 7778.61 8285.74 6875.03 6909.36 7312.14 7879.65 8316.09 TRUE FALSE FALSE 7478.412989 7834.69332 7917.499545 8095.855338 7674.517468 6743.900257 7175.85633 8144.524461 7554.847492 8266.625527 0.904651235 0.947749876 0.957766808 0.979342213 0.928373669 0.815798446 0.868051457 0.985229636 0.91389739 1 13.01308282 -13.52287874 0.236584521 1.472809852 0.90825247 0 0.055699119 49.53607322 0.644226601 10.91628616 0.035237244 3.00E-14 13.52287874 -0.564557382 DGASS(ph)SPESASR ddPTM_HeLa_CUDC101_4h_R1 1 DGASSSPESASR 12 0 A0A075B6E4;A0A0A6YYI5;G5E9M7;Q14135-2;Q14135;Q14135-4;G5E9M9;Q14135-5;Q14135-6 A0A075B6E4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 DGAS(0.003)S(0.499)S(0.499)PESASR 119.21 0.0035129 25271000 1647 1156.8 1622 1466.5 1253.4 1314.8 1085.2 641.55 1616.4 2260.1 TRUE FALSE FALSE 1453.941157 1192.439637 1709.690226 1526.310209 1160.939179 1289.722381 1127.056528 714.5814588 1549.771308 2246.656825 0.647157653 0.530761807 0.760993049 0.679369538 0.516740771 0.574062922 0.501659406 0.318064357 0.689812209 1 11.13356406 -13.52287874 0.088730992 2.500665257 0.162666907 0.467514258 0.126240093 46.01062543 0.309751259 13.17953608 1.164541462 3.00E-14 13.52287874 -2.33799835 AQSNGSGNGS(ph)DSEMDTSSLER ddPTM_HeLa_CUDC101_4h_R1 4 AQSNGSGNGSDSEMDTSSLER 21 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 AQSNGSGNGS(0.967)DS(0.03)EMDT(0.002)S(0.001)SLER;AQSNGSGNGS(0.991)DS(0.009)EMDTSSLER;AQSNGSGNGS(0.989)DS(0.011)EMDTSSLER;AQSNGSGNGS(0.999)DS(0.001)EMDTSSLER ;;; 212.06 3.33E-26 57505300 5130.81 4471.52 4085.56 4588.49 4630.5 4610.99 4339.7 4348.64 4948.54 4146.51 TRUE FALSE FALSE 4529.38423 4609.282231 4306.437732 4775.628455 4288.91724 4523.043048 4507.083683 4843.6716 4744.559087 4121.846374 1.098872646 1.118256677 1.044783658 1.158613889 1.040533016 1.097334213 1.093462316 1.175121817 1.151076158 1 12.00907502 -13.52287874 0.208523855 0.483207582 1.118511862 0 0.062618308 28.97648245 0.358749666 6.068324745 0.03427654 3.00E-14 13.52287874 0.63530428 QQGHEPVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 QQGHEPVSPR 10 0 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 0 QQGHEPVS(1)PR 81.904 0.026101 57302000 3483.2 2848.5 3334 3085.6 2748.3 2479.8 2973.1 2264.9 2988.4 3976.3 TRUE FALSE FALSE 3074.904576 2936.258909 3514.246125 3211.444105 2545.563384 2432.501947 3087.773463 2522.727061 2865.216887 3952.648791 0.777935187 0.74285854 0.88908636 0.812478992 0.644014563 0.615410596 0.78119095 0.63823709 0.72488527 1 11.94860406 -13.52287874 0.113921795 1.918575348 0.575717433 0.054545134 0.110193658 41.15906123 0.342213895 8.714895828 0.409498927 3.00E-14 13.52287874 -1.342857916 QTDKVPSK(ac)TVAAK ddPTM_HeLa_CUDC101_4h_R1 1 QTDKVPSKTVAAK 13 2 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 0 1 QTDKVPSK(1)TVAAK 104.94 0.013434 0 1931.8 3153.5 3965.8 5018 4663.5 6169.4 4365.6 3985.9 564.18 771.41 FALSE TRUE FALSE 1705.357332 3250.655597 4180.203144 5222.65573 4319.482896 6051.728974 4533.982654 4439.638744 540.9242616 766.821619 2.223929647 4.239128784 5.451337104 6.810783108 5.632969636 7.891964472 5.912695394 5.789662986 0.705410813 1 9.582747201 -7.071776213 1.140634867 1.389886624 6.489087374 0.916280368 0.675769783 0.080191937 0.203189852 0.129729757 0.168541823 8.48E-08 7.071776213 5.099200749 up (ac)SKS(ph)ESPKEPEQLR ddPTM_HeLa_CUDC101_4h_R1 1 SKSESPKEPEQLR 13 2 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.23)KS(0.763)ES(0.008)PKEPEQLR 73.841 0.0047864 3652100 1353 1010.2 1459.5 977.27 1388.6 1165.8 855.16 800.64 1208.8 1738.6 TRUE FALSE FALSE 1194.403391 1041.323065 1538.404985 1017.127295 1286.165744 1143.564307 888.1438077 891.7816213 1158.972752 1728.25873 0.691102189 0.602527299 0.890147383 0.588527214 0.744197453 0.661685827 0.513895166 0.516000068 0.670601417 1 10.7551035 -13.52287874 0.125246707 2.222033162 0.473333945 0.133705397 0.137885189 35.56858997 0.318727371 10.89068868 0.388991142 3.00E-14 13.52287874 -1.748699217 S(ph)SSLGSTPHEELER ddPTM_HeLa_CUDC101_4h_R1 1 SSSLGSTPHEELER 14 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(0.332)S(0.332)S(0.332)LGS(0.003)TPHEELER 79.013 0.0030391 0 1632.7 1514.9 1144.1 1312.8 1687.4 1528.5 962.34 1172.8 1985.5 1742.9 TRUE FALSE FALSE 1441.317381 1561.572273 1205.953507 1366.341658 1562.923864 1499.346409 999.4577762 1306.306811 1903.65685 1732.533153 0.831913305 0.90132317 0.69606374 0.788638102 0.902103294 0.865407052 0.576876566 0.753986617 1.098770806 1 10.75866724 -13.52287874 0.069967311 1.801397137 0.492582161 0.571342586 0.09278918 136.583852 0.742380776 17.82261783 2.569371602 3.00E-14 13.52287874 -1.308814976 LTVENSPKQEAGIS(ph)EGQGTAGEEEEK ddPTM_HeLa_CUDC101_4h_R1 1 LTVENSPKQEAGISEGQGTAGEEEEK 26 1 F8VVL1;O43583 F8VVL1 DENR Density-regulated protein 1 0 LT(0.007)VENS(0.187)PKQEAGIS(0.775)EGQGT(0.031)AGEEEEK 73.649 0.00015079 194040000 2240.4 2050.2 2312.7 1875.5 1749 2009.4 1677.9 1579.3 1927 2636.4 TRUE FALSE FALSE 1977.783708 2113.364232 2437.731558 1951.990997 1619.979754 1971.074043 1742.617165 1759.081128 1847.568244 2620.718576 0.754672297 0.8064064 0.930176777 0.74483045 0.618143348 0.752112059 0.664938686 0.671220918 0.704985366 1 11.35574672 -13.52287874 0.116356846 1.888779149 0.585724624 0.015155045 0.112660584 42.03429356 0.355481456 8.837053536 0.391264352 3.00E-14 13.52287874 -1.303054525 EEASS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 1 EEASSPLK 8 0 A0A590UJ84;B1AKN3;Q9P2R6-2;Q9P2R6;D6RA28 A0A590UJ84 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 EEAS(0.326)S(0.674)PLK 97.565 0.0029251 0 6366.9 3146.2 6104.9 5549.4 3878.8 4223.8 4371.9 1810.4 5978.7 8926.2 TRUE FALSE FALSE 5620.581634 3243.130693 6434.94936 5775.728519 3592.668652 4143.238052 4540.525647 2016.488618 5732.255455 8873.106565 0.633440114 0.365501154 0.725219438 0.650925183 0.404894117 0.466943344 0.511717696 0.22725847 0.646025765 1 13.11522358 -13.52287874 0.099640408 2.755475466 0.117539009 0.37314413 0.163308648 42.92717449 0.319421009 15.52747925 1.039904711 3.00E-14 13.52287874 -2.637936457 PDPSK(ac)SAPAPK ddPTM_HeLa_CUDC101_4h_R1 2 PDPSKSAPAPK 11 1 Q8N257 Q8N257 HIST3H2BB Histone H2B type 3-B 0 1 ; PDPSK(1)SAPAPK;PDPSK(1)SAPAPK 118.28 0.0024554 20163400 5005.2 7661.6 11828.1 15339.4 12667.9 12525.5 12843 10648.6 1708.14 1949.99 FALSE TRUE FALSE 4418.498043 7897.644815 12467.56286 15965.00703 11733.41426 12286.59696 13338.35881 11860.79358 1637.729746 1938.391373 2.27946642 4.074329326 6.431912069 8.23621445 6.053170902 6.338553261 6.881148461 6.118884838 0.844891166 1 10.92064417 -7.059942373 1.699251203 1.511592995 6.758706317 0.92817844 0.664254783 0.065403542 0.367207537 0.128440303 0.164875154 8.71E-08 7.059942373 5.247113322 up RRTCET(ph)GEPMEAESGDTSSEGPAQVYLPGR ddPTM_HeLa_CUDC101_4h_R1 1 RRTCETGEPMEAESGDTSSEGPAQVYLPGR 30 2 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 1 0 RRT(0.206)CET(0.793)GEPMEAESGDTSSEGPAQVYLPGR 87.532 1.19E-06 12931000 89.706 177.51 264.95 154.86 206.2 224.34 0 0 362.36 312.09 TRUE FALSE FALSE 79.19079867 182.9788727 279.2739984 161.1758602 190.9890368 220.0610883 0 0 347.4233674 310.2336748 0.255261776 0.589809835 0.9002053 0.519530513 0.615629612 0.709339785 0 0 1.119876389 1 8.277211484 -13.52287874 0.322388115 6.692505655 0.408692436 0.445074734 0.275684383 44.1163579 0.594041842 164.6494359 0.111581453 3.00E-14 13.52287874 -6.283813219 RSDS(ph)PEIPFQAAAGPSDGLDASS(ph)PGNSFVGLR ddPTM_HeLa_CUDC101_4h_R1 1 RSDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 32 1 Q12888;Q12888-3;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 RS(0.07)DS(0.927)PEIPFQAAAGPS(0.002)DGLDAS(0.153)S(0.755)PGNS(0.093)FVGLR 56.873 0.00075784 5232000 899.58 969.09 847.6 570.55 975.05 955.94 682.43 941.8 1012.7 710.25 TRUE FALSE FALSE 794.1325961 998.9465142 893.4238198 593.8194951 903.1225041 937.7070372 708.7515537 1049.010705 970.9560774 706.0254014 1.124793236 1.414887499 1.265427303 0.841073839 1.279164322 1.328149151 1.003861267 1.485797399 1.375242414 1 9.46357628 -13.52287874 0.103976 0.253802797 1.354165724 0 0.216548521 142.2974386 1.097517264 22.42073755 1.347042934 3.00E-14 13.52287874 1.100362927 NSSSSGTSLLT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 NSSSSGTSLLTPK 13 0 Q9NXV6 Q9NXV6 CDKN2AIP CDKN2A-interacting protein 1 0 NSSSSGT(0.001)S(0.002)LLT(0.998)PK 103.66 0.034802 8282500 1089.9 903.84 920.08 1173.4 1326.5 870.77 912.37 532.75 1128.1 1289.1 TRUE FALSE FALSE 962.1435742 931.6862391 969.8223079 1221.256324 1228.646738 854.1615131 947.5604165 593.3961066 1081.599241 1281.432376 0.750834451 0.727066255 0.756826756 0.95304001 0.958807317 0.666567764 0.739454094 0.46307251 0.844054872 1 10.32354163 -13.52287874 0.036986898 2.200713438 1.75E-10 0.302327411 0.127554122 662.9703605 1.961247823 97.45874121 34.42468389 3.00E-14 13.52287874 -2.200713438 SQS(ph)DLSSSSSR ddPTM_HeLa_CUDC101_4h_R1 2 SQSDLSSSSSR 11 0 J3KP75 J3KP75 PHACTR2 Phosphatase and actin regulator 1 0 S(0.229)QS(0.771)DLSSSSSR;S(0.003)QS(0.985)DLS(0.013)SSSSR ; 143.58 0.0012131 78243000 4207.5 2786.7 3817.5 3678.5 3603.1 3273.8 3443.1 2669.7 4478.2 4308.2 TRUE FALSE FALSE 3714.303228 2872.554924 4023.885597 3828.52513 3337.306491 3211.35772 3575.90152 2973.607857 4293.606701 4282.574635 0.867306129 0.6707542 0.939594973 0.893977445 0.779275734 0.749866142 0.834988722 0.694350504 1.002576036 1 12.06426267 -13.52287874 0.099371963 1.688595873 0.656638058 0.533896478 0.076998041 71.56930478 0.53132899 10.09989175 0.680991896 3.00E-14 13.52287874 -1.031957815 ADDADEFGYS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 ADDADEFGYSR 11 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 1 0 ADDADEFGYS(1)R 111.72 0.0064999 12897000 1807.4 1266.4 1635 1481 1629 1847.4 1521 1398 1860.9 1384 TRUE FALSE FALSE 1595.539312 1305.416283 1723.393046 1541.401581 1508.831915 1812.163923 1579.665479 1557.142669 1784.192914 1375.767906 1.159744536 0.948863741 1.252677169 1.120393617 1.096719809 1.317201771 1.148206374 1.131835291 1.296870574 1 10.42602139 -13.52287874 0.166734593 0.389866679 1.196833782 0 0.128238974 53.88990542 0.590740012 10.72862958 0.147413074 3.00E-14 13.52287874 0.806967103 ISQQQEQLLMKSPT(ph)VPVPGSK ddPTM_HeLa_CUDC101_4h_R1 1 ISQQQEQLLMKSPTVPVPGSK 21 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 ISQQQEQLLMKS(0.409)PT(0.582)VPVPGS(0.009)K 58.755 0.023854 8782900 1335.9 1008.5 1147.8 1100.4 1403.6 1031.7 1159.9 890.73 1342.3 1353.7 TRUE FALSE FALSE 1179.307827 1039.57069 1209.85354 1145.279068 1300.059224 1012.022041 1204.637732 992.1271027 1286.969826 1345.648132 0.876386478 0.772542736 0.899086107 0.851098471 0.966121227 0.752070335 0.89521005 0.737285683 0.956394019 1 10.3940855 -13.52287874 0.155057891 1.604682446 0.797743994 0.37981771 0.068878393 41.59801578 0.435043701 7.565334973 0.134981309 3.00E-14 13.52287874 -0.806938452 DAGT(ph)IAGLNVLR ddPTM_HeLa_CUDC101_4h_R1 1 DAGTIAGLNVLR 12 0 P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 0 DAGT(1)IAGLNVLR 122.1 0.014582 4390600 1274.7 1174.7 979.59 1194 1006.2 1373.4 1173.8 1048.4 906.05 950.83 TRUE FALSE FALSE 1125.281598 1210.891115 1032.549598 1242.696481 931.9746306 1347.204683 1219.073859 1167.745618 868.7022355 945.1744209 1.190554435 1.281129798 1.092443443 1.314780059 0.986034546 1.425350341 1.289787189 1.235481613 0.919091986 1 9.884436776 -13.52287874 0.137807034 0.155192074 1.324581948 0.468654986 0.115062493 53.04121372 0.510705329 12.12741833 0.321767123 3.00E-14 13.52287874 1.169389874 SCST(ph)EQPLTS(ph)T(ph)KT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SCSTEQPLTSTKTPK 15 1 A0A3B3IRW6;Q2KHR3 A0A3B3IRW6 QSER1 Glutamine and serine-rich protein 1 4 0 S(0.272)CS(0.347)T(0.42)EQPLT(0.096)S(0.958)T(0.955)KT(0.952)PK 72.793 0.0020521 0 2065.5 1602.4 1864.8 1577 1894.6 1993.2 1793.7 1683.1 1676.2 1543 TRUE FALSE FALSE 1823.385221 1651.768045 1965.616729 1641.316876 1754.839133 1955.183031 1862.88361 1874.697301 1607.106327 1533.822167 1.188785284 1.076896709 1.2815154 1.070082902 1.144095561 1.274712983 1.214536893 1.222239019 1.047778785 1 10.58291551 -13.52287874 0.188359648 0.163176629 1.226944582 0.496273632 0.066734011 29.2192791 0.343929945 8.964378409 0.077080311 3.00E-14 13.52287874 1.063767953 PAS(ph)PDRFAVSAEAENK ddPTM_HeLa_CUDC101_4h_R1 2 PASPDRFAVSAEAENK 16 1 G3V331;O15037 G3V331 KHNYN Protein KHNYN 1 0 PAS(1)PDRFAVSAEAENK;PAS(1)PDRFAVSAEAENK ; 100.01 0.0024593 63562000 5485.5 4702.5 4912.2 4797.8 4499.5 3929.3 4065.4 3769.3 5101.3 5983.7 TRUE FALSE FALSE 4842.498005 4847.378451 5177.768391 4993.475022 4167.580849 3854.355149 4222.20384 4198.381876 4891.022255 5948.108686 0.814123995 0.814944499 0.870489876 0.839506352 0.700656472 0.647996759 0.709839726 0.705834762 0.822281924 1 12.53821529 -13.52287874 0.043860916 2.199545882 0.0974131 0.496701056 0.069823226 165.0202609 0.57619392 25.28812444 7.386229537 3.00E-14 13.52287874 -2.102132782 HSPIAPS(ph)SPSPQVLAQK ddPTM_HeLa_CUDC101_4h_R1 1 HSPIAPSSPSPQVLAQK 17 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 HS(0.001)PIAPS(0.543)S(0.362)PS(0.094)PQVLAQK 71.872 0.014827 16761000 3344.1 2520 2732.3 2409.5 3219.4 2881.7 2493.8 1773 3489.2 3811.1 TRUE FALSE FALSE 2952.109667 2597.638213 2880.016403 2507.769825 2981.911276 2826.736374 2589.986701 1974.831153 3345.373699 3788.431408 0.779243267 0.685676454 0.760213422 0.66195466 0.787109744 0.746149546 0.683656749 0.521279374 0.883049827 1 11.88738491 -13.52287874 0.116360582 2.044584871 0.536268923 0.652062485 0.072519677 30.66645289 0.259350953 7.462979469 0.33039647 3.00E-14 13.52287874 -1.508315948 PSADLTNSSAPSPS(ph)HK ddPTM_HeLa_CUDC101_4h_R1 1 PSADLTNSSAPSPSHK 16 0 E7ETY4;E9PC69;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-6;Q7KZI7-3;Q7KZI7-14;Q7KZI7-9;Q7KZI7-13;Q7KZI7-4;Q7KZI7-16;Q7KZI7-5;Q7KZI7-15;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 PSADLTNS(0.001)S(0.001)APS(0.026)PS(0.971)HK 161.48 6.71E-11 0 1930.9 1648 1695.9 2030.7 1749.4 1253.5 1557.5 1399.5 1529.9 2257.6 TRUE FALSE FALSE 1704.562829 1698.772927 1787.585484 2113.520723 1620.350247 1229.591576 1617.573297 1558.813423 1466.836874 2244.171695 0.759550988 0.756971015 0.796545776 0.941782096 0.722025971 0.547904413 0.720788566 0.694605242 0.653620611 1 11.13196734 -13.52287874 0.133664753 1.926803961 0.62249541 0 0.136679327 42.87686246 0.40364919 10.55072351 0.308525913 3.00E-14 13.52287874 -1.304308552 SNS(ph)FNNPLGNR ddPTM_HeLa_CUDC101_4h_R1 2 SNSFNNPLGNR 11 0 O95835;O95835-2 O95835 LATS1 Serine/threonine-protein kinase LATS1 1 0 S(0.003)NS(0.997)FNNPLGNR;S(0.029)NS(0.971)FNNPLGNR ; 166.62 2.65E-05 45080000 3344.66 3153.9 2602.8 2712.6 3464.2 3051.9 2912.1 2831.6 3191.6 2655.73 TRUE FALSE FALSE 2952.604025 3251.067921 2743.515241 2823.231553 3208.652868 2993.690092 3024.420672 3153.937898 3060.040897 2639.9336 1.118438746 1.231496096 1.039236457 1.069432789 1.215429383 1.134002042 1.145642706 1.194703495 1.159135555 1 11.36628593 -13.52287874 0.163203024 0.418785096 1.183299594 0 0.076368066 37.96237123 0.410547683 6.970256723 0.103582683 3.00E-14 13.52287874 0.764514498 T(ph)GSQGQCTQVR ddPTM_HeLa_CUDC101_4h_R1 1 TGSQGQCTQVR 11 0 P62857 P62857 RPS28 40S ribosomal protein S28 1 0 T(0.499)GS(0.499)QGQCT(0.003)QVR 143.58 0.0058544 30376000 715.7 973.43 630.23 639.09 930.56 786.76 806.18 336.17 996.68 866.21 TRUE FALSE FALSE 631.8067309 1003.420225 664.3021401 665.1548526 861.9144427 771.7538638 837.2746327 374.438234 955.5964285 861.0577444 0.733756516 1.165334417 0.771495459 0.772485768 1.000994937 0.89628584 0.972379191 0.434858448 1.109793663 1 9.749966181 -13.52287874 0.019337663 2.007894466 1.38E-08 0.155181483 0.187153081 6524.196635 10.17669315 693.0787853 401.1466967 3.00E-14 13.52287874 -2.007894452 ASAVSELS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 6 ASAVSELSPR 10 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR ;;;;; 132.56 0.0020132 9165424000 15435.5 14011.3 12743.9 12851.3 14166.8 13490.5 12941.6 11570.5 14333 14813.7 TRUE FALSE FALSE 13626.17409 14442.97155 13432.87378 13375.43156 13121.74339 13233.19119 13440.76185 12887.63895 13742.18767 14725.58745 0.925339932 0.980807835 0.9122131 0.908312256 0.891084544 0.898652854 0.912748771 0.875186745 0.933218299 1 13.84603757 -13.52287874 0.090680738 1.308119421 0.831229734 0.426252586 0.028046092 48.00496177 0.329381178 2.862920624 0.240644316 3.00E-14 13.52287874 -0.476889687 MPCES(ph)SPPESADTPTSTR ddPTM_HeLa_CUDC101_4h_R1 1 MPCESSPPESADTPTSTR 18 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 MPCES(0.881)S(0.119)PPESADTPTSTR 141.1 0.00017183 4627800 1948.6 1802.7 2005 1815.5 1841.7 1761.2 1592.5 1553.3 1930.6 2425.8 TRUE FALSE FALSE 1720.188062 1858.23905 2113.396365 1889.543937 1705.84146 1727.608044 1653.923258 1730.121393 1851.019851 2411.371234 0.713365092 0.770615086 0.876429284 0.783597279 0.70741553 0.716442172 0.685884958 0.717484462 0.767621271 1 11.23563806 -13.52287874 0.250521917 2.661682459 0.715427325 0.018508462 0.090849711 16.97725199 0.224476243 13.93560258 0.034414723 3.00E-14 13.52287874 -1.946255134 (ac)MNTSPGT(ph)VGSDPVILATAGYDHTVR ddPTM_HeLa_CUDC101_4h_R1 1 MNTSPGTVGSDPVILATAGYDHTVR 25 0 H3BQ74;I3L2E7;H3BR38;H3BM50;H3BPU5;H3BR25;H3BPT1;H3BN58;H3BSZ4;A0A0A0MR05;Q9BVC4-5;Q9BVC4 H3BQ74 MLST8 Target of rapamycin complex subunit LST8 1 0 MNT(0.299)S(0.299)PGT(0.352)VGS(0.05)DPVILATAGYDHTVR 65.423 6.58E-05 2073100 745.15 693.32 691.89 584.49 802.53 744.67 554.13 589.27 758.36 772.87 TRUE FALSE FALSE 657.8046466 714.6803674 729.2956663 608.3280286 743.3289608 730.4666605 575.5029797 656.3501149 727.1000798 768.2729349 0.856212183 0.930242802 0.949266378 0.79181239 0.967532406 0.950790568 0.749086625 0.854318934 0.946408557 1 9.58547512 -13.52287874 0.252531445 1.783623682 0.86531587 0.211552787 0.069417538 42.9523215 0.569055706 16.81651804 0.039976986 3.00E-14 13.52287874 -0.918307811 REGPVGGESDS(ph)EEMFEK ddPTM_HeLa_CUDC101_4h_R1 2 REGPVGGESDSEEMFEK 17 1 Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5;J3QL92 Q9Y4B5-2 MTCL1 Microtubule cross-linking factor 1 1 0 REGPVGGES(0.051)DS(0.949)EEMFEK;REGPVGGES(0.058)DS(0.942)EEMFEK ; 128.04 0.00014489 65678000 6529.9 5455.66 5324.66 5548.4 6690.7 5704.4 5690.4 5583.48 6019.5 5240.47 TRUE FALSE FALSE 5764.475021 5623.742418 5612.527226 5774.687734 6197.140391 5595.598074 5909.880634 6219.080794 5771.373662 5209.299451 1.10657394 1.079558292 1.077405374 1.108534418 1.189630285 1.07415558 1.134486641 1.193842061 1.107898234 1 12.34687366 -13.52287874 0.106752518 0.588426592 1.203244943 0.236284227 0.047291585 47.30379579 0.372938284 4.279807288 0.239969084 3.00E-14 13.52287874 0.614818351 NST(ph)PSSSSSLQK ddPTM_HeLa_CUDC101_4h_R1 1 NSTPSSSSSLQK 12 0 F8VRZ8;Q9P0U3-2;Q9P0U3 F8VRZ8 SENP1 Sentrin-specific protease 1 1 0 NS(0.009)T(0.958)PS(0.031)S(0.001)S(0.001)SSLQK 124.47 0.012629 12847000 3735.8 3095.7 3453.2 2655.4 3255.9 3500.9 3016.5 2497.1 3639.9 3801 TRUE FALSE FALSE 3297.895187 3191.074848 3639.890437 2763.69869 3015.718744 3434.126165 3132.847415 2781.35977 3489.861781 3778.391483 0.872830463 0.844559083 0.963343913 0.731448475 0.798148831 0.908885747 0.829148443 0.736122708 0.923636896 1 11.88355647 -13.52287874 0.10820278 1.576933863 0.726756434 0.403933316 0.066308722 59.31400789 0.472868557 7.526432404 0.407110233 3.00E-14 13.52287874 -0.850177428 DAGDPS(ph)PPNK ddPTM_HeLa_CUDC101_4h_R1 3 DAGDPSPPNK 10 0 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5;Q9BTA9-3;E9PMZ7;C9JMU2;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 0 DAGDPS(1)PPNK;DAGDPS(1)PPNK;DAGDPS(1)PPNK ;; 96.745 0.019786 241504000 20786.8 18034.9 18574.8 18385.7 18586.8 17381.6 16897.2 16207.4 18482.3 20648.5 TRUE FALSE FALSE 18350.20281 18590.53389 19579.00987 19135.54832 17215.68879 17050.07494 17548.93066 18052.3849 17720.45177 20525.6818 0.894011853 0.905720651 0.953878661 0.932273456 0.83873895 0.830670333 0.854974311 0.879502327 0.863330726 1 14.32514252 -13.52287874 0.10933311 1.395184584 0.807362181 0 0.052221193 49.19089213 0.395530717 4.363276763 0.229509422 3.00E-14 13.52287874 -0.587822403 QEPGGSHGS(ph)ETEDTGR ddPTM_HeLa_CUDC101_4h_R1 2 QEPGGSHGSETEDTGR 16 0 Q9UKJ3;Q9UKJ3-2 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 1 0 QEPGGS(0.199)HGS(0.49)ET(0.311)EDTGR;QEPGGS(0.064)HGS(0.888)ET(0.046)EDT(0.002)GR ; 142.88 0.00028946 26565000 5657.4 4879.6 4315.3 5064.3 4839.7 5513 4217.2 3890.4 4906.3 5736.9 TRUE FALSE FALSE 4994.248148 5029.934692 4548.598171 5270.844044 4482.684973 5407.84871 4379.858817 4333.26741 4704.060237 5702.776664 0.875757275 0.882015023 0.797611136 0.924259243 0.786053047 0.948283447 0.768022154 0.759852203 0.824871903 1 12.47744882 -13.52287874 0.101745737 1.543710053 0.726946217 0 0.078771384 60.45422775 0.457863233 6.915227646 0.439288869 3.00E-14 13.52287874 -0.816763836 YLSVPPSPNISTS(ph)ESR ddPTM_HeLa_CUDC101_4h_R1 1 YLSVPPSPNISTSESR 16 0 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 YLSVPPS(0.204)PNIS(0.177)T(0.204)S(0.413)ES(0.003)R 120.54 0.00055178 7532900 3124.7 2298.8 2557.2 2563.7 2436.4 2479.4 2531.7 2959.6 2461.6 2316.6 TRUE FALSE FALSE 2758.427403 2369.623303 2695.449967 2668.258767 2256.671626 2432.109576 2629.348517 3296.508901 2360.131806 2302.82076 1.197847201 1.029009007 1.170499248 1.158691468 0.979959737 1.056143673 1.14179469 1.431509112 1.024887324 1 11.16918641 -13.52287874 0.020354469 1.92E-07 1.9498806 0.243230496 0.111073339 3772.1754 6.191242892 394.5376232 221.9089021 3.00E-14 13.52287874 1.949880408 VQIPVSRPDPEPVS(ph)DNEEDS(ph)YDEEIHDPR ddPTM_HeLa_CUDC101_4h_R1 1 VQIPVSRPDPEPVSDNEEDSYDEEIHDPR 29 1 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2;H0YKB1 G3V1L9 TJP1 Tight junction protein ZO-1 2 0 VQIPVSRPDPEPVS(0.975)DNEEDS(0.549)Y(0.476)DEEIHDPR 59.011 0.0026986 7474300 443.66 619.79 392 244.12 461.8 341.23 247.51 350.14 395.73 660.9 TRUE FALSE FALSE 391.6548473 638.8849953 413.1927057 254.0762688 427.733934 334.7216063 257.0565436 389.9985223 379.4178419 656.9689374 0.596154285 0.972473672 0.628937964 0.386740155 0.651071778 0.509493809 0.391276557 0.593633123 0.577527826 1 9.359681349 -13.52287874 0.127920599 2.477679051 0.37052067 0.087089311 0.188818418 43.29817556 0.394335487 16.36297002 0.548276416 3.00E-14 13.52287874 -2.107158381 EKQEASES(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 EKQEASESPVK 11 1 Q01167-2;Q01167;E9PPI7;Q01167-3 Q01167-2 FOXK2 Forkhead box protein K2 1 0 EKQEAS(0.001)ES(0.999)PVK;EKQEAS(0.002)ES(0.998)PVK ; 67.846 0.03647 123153000 11318.7 5147.7 11736.9 11240 7543.1 7311.9 8114.8 4098.5 11590.9 14737.5 TRUE FALSE FALSE 9991.939144 5306.294535 12371.43232 11698.41578 6986.660541 7172.43769 8427.790554 4565.056673 11113.1182 14649.84069 0.682051044 0.362208344 0.844475553 0.798535358 0.476910342 0.489591514 0.575282061 0.311611353 0.75858287 1 13.83859736 -13.52287874 0.07948633 2.549356597 0.089473032 0.393467981 0.16516756 92.88494339 0.567058112 25.34082058 2.844150842 3.00E-14 13.52287874 -2.459883564 REEDEENDNDNESDHDEADS(ph) ddPTM_HeLa_CUDC101_4h_R1 1 REEDEENDNDNESDHDEADS 20 1 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 0 REEDEENDNDNES(0.27)DHDEADS(0.73) 94.259 0.00071122 20175000 2230.7 2180.4 2066.4 1779.7 1832.3 2072.8 2033.9 1575.5 2520.5 2522.9 TRUE FALSE FALSE 1969.220728 2247.57554 2178.115835 1852.283859 1697.134879 2033.264794 2112.348204 1754.848552 2416.603923 2507.893679 0.785209016 0.896200488 0.868504057 0.738581493 0.676717236 0.81074601 0.842279807 0.699730043 0.963599033 1 11.29226047 -13.52287874 0.196909142 2.000179364 0.747120631 0.617607843 0.063041495 25.61606448 0.308574265 9.810138035 0.070450222 3.00E-14 13.52287874 -1.253058732 SEDES(ph)ETEDEEEKSQEDQEQK ddPTM_HeLa_CUDC101_4h_R1 4 SEDESETEDEEEKSQEDQEQK 21 1 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 1 0 S(0.003)EDES(0.939)ET(0.057)EDEEEKSQEDQEQK;S(0.002)EDES(0.796)ET(0.202)EDEEEKSQEDQEQK;S(0.003)EDES(0.868)ET(0.129)EDEEEKSQEDQEQK;S(0.002)EDES(0.66)ET(0.338)EDEEEKSQEDQEQK ;;; 130.07 2.38E-07 165921000 7217.9 8095.9 7297.8 7150.7 7075.4 6964.2 6305.9 5529.6 9558.2 9442.5 TRUE FALSE FALSE 6371.828704 8345.325083 7692.341143 7442.336454 6553.461838 6831.369488 6549.120675 6159.067313 9164.20695 9386.33559 0.678840922 0.88909298 0.819525476 0.792890514 0.698191725 0.727799408 0.697729227 0.656173781 0.976334893 1 13.19634633 -13.52287874 0.283586447 3.058270695 0.719069594 0.694872546 0.065467058 21.8142022 0.294619947 25.46782276 0.034121574 3.00E-14 13.52287874 -2.3392011 QALDYVELSPLTQAS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 2 QALDYVELSPLTQASPQR 18 0 F6WYE2;F6TR96;H0Y5J9;Q9H2D6-6;Q9H2D6-5;Q9H2D6-7;Q9H2D6-3;Q9H2D6-2;Q9H2D6 F6WYE2 TRIOBP TRIO and F-actin-binding protein 1 0 QALDYVELSPLT(0.006)QAS(0.994)PQR;QALDYVELSPLT(0.079)QAS(0.921)PQR ; 266.99 2.91E-71 45581000 6783.1 6311.8 5715.9 5523.7 6769.5 5891.5 5635.4 5412.7 6873.6 6775 TRUE FALSE FALSE 5987.995301 6506.259077 6024.918844 5748.980361 6270.127472 5779.129453 5852.759266 6028.859889 6590.267299 6734.701999 0.889125503 0.966079728 0.894608083 0.853635449 0.931017805 0.858112126 0.869045025 0.895193268 0.978553661 1 12.71739839 -13.52287874 0.199977129 1.516563489 0.871983113 0.618333835 0.030703484 22.69381878 0.275478566 4.562502034 0.030735942 3.00E-14 13.52287874 -0.644580376 LLSSS(ph)LTADCSLR ddPTM_HeLa_CUDC101_4h_R1 2 LLSSSLTADCSLR 13 0 Q147X3;Q147X3-2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 LLS(0.001)S(0.031)S(0.963)LT(0.006)ADCSLR;LLSS(0.039)S(0.903)LT(0.057)ADCSLR ; 139.48 0.00077325 16332500 2465.31 2064.02 1659.14 1876.59 2357.6 2052.52 2036.86 2459.74 1642.13 1650.51 TRUE FALSE FALSE 2176.330099 2127.61001 1748.838127 1953.125452 2183.684545 2013.371601 2115.422373 2739.746859 1574.440706 1640.692693 1.326470282 1.296775453 1.065914497 1.190427348 1.330952807 1.227147295 1.289347104 1.669872043 0.959619503 1 10.68008933 -13.52287874 0.064536875 8.52E-12 1.720983623 0.525548402 0.133413214 203.92462 1.028444697 32.86607039 5.475241588 3.00E-14 13.52287874 1.720983623 RRS(ph)ST(ph)VAPAQPDGAESEWTDVETR ddPTM_HeLa_CUDC101_4h_R1 2 RRSSTVAPAQPDGAESEWTDVETR 24 2 Q02241;A0A2U3TZL8;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 2 0 RRS(0.52)S(0.52)T(0.959)VAPAQPDGAES(0.001)EWTDVETR;RRS(0.566)S(0.566)T(0.868)VAPAQPDGAESEWTDVETR ; 102.78 7.73E-06 20410200 2050.7 1556.92 1583.23 1560.03 1625.69 2191.75 1629.95 974.98 1996.73 2089.36 TRUE FALSE FALSE 1810.320055 1604.88686 1668.824203 1623.654766 1505.766088 2149.94602 1692.817717 1085.967782 1914.423944 2076.932394 0.871631672 0.772719837 0.803504345 0.781756195 0.724995234 1.035154551 0.815056726 0.522871031 0.921755542 1 11.02023854 -13.52287874 0.060788377 1.831811124 0.451584704 0.29247093 0.116787228 239.8603124 1.143798213 29.6689568 5.465439351 3.00E-14 13.52287874 -1.380226419 LSVQSNPS(ph)PQLR ddPTM_HeLa_CUDC101_4h_R1 1 LSVQSNPSPQLR 12 0 O75152;E9PBY7;E9PQ61;A0A1W2PPR9 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 LSVQS(0.001)NPS(0.999)PQLR 145.83 0.0009515 31970000 1359.7 1140.4 1104 1111.1 1132.9 1263 1175 767.49 1202 1389.9 TRUE FALSE FALSE 1200.318027 1175.534372 1163.685579 1156.415461 1049.328224 1238.910379 1220.320144 854.8579593 1152.453051 1381.632813 0.868767748 0.850829802 0.842253867 0.836991891 0.759484151 0.896700171 0.883244906 0.618730209 0.834123973 1 10.43215854 -13.52287874 0.074846451 1.65306102 0.60413232 0.170699856 0.084996171 108.536829 0.627502158 11.99372956 1.520062728 3.00E-14 13.52287874 -1.0489287 IMGPNYT(ph)PGKK ddPTM_HeLa_CUDC101_4h_R1 1 IMGPNYTPGKK 11 1 P13639 P13639 EEF2 Elongation factor 2 1 0 IMGPNY(0.001)T(0.999)PGKK 124.3 0.015554 33683000 2436.7 2248.5 2467.3 2004.9 2150.7 1999.3 1690.1 1994.7 1898.3 2758.7 TRUE FALSE FALSE 2151.07372 2317.77362 2600.689701 2086.668488 1992.047146 1961.166684 1755.287723 2221.768585 1820.051271 2742.29113 0.784407497 0.845196046 0.948363824 0.760921576 0.726417091 0.715156266 0.640080735 0.810186986 0.663697319 1 11.42116602 -13.52287874 0.114297306 1.775181822 0.633239551 0 0.123875882 48.67543363 0.405784029 8.795604632 0.409511032 3.00E-14 13.52287874 -1.141942271 AAEEQGDDQDSEKS(ph)KPAGSDGER ddPTM_HeLa_CUDC101_4h_R1 2 AAEEQGDDQDSEKSKPAGSDGER 23 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 AAEEQGDDQDS(0.019)EKS(0.728)KPAGS(0.253)DGER;AAEEQGDDQDS(0.009)EKS(0.732)KPAGS(0.258)DGER ; 50.873 0.016461 123793000 3336 3198.1 2678.8 3150.9 2789 3297.1 3164.5 2056.17 3470.8 3450.2 TRUE FALSE FALSE 2944.959137 3296.62967 2823.624031 3279.407321 2583.261026 3234.213311 3286.555825 2290.236081 3327.732155 3429.678057 0.858669265 0.961206742 0.823291278 0.956185177 0.753208022 0.943007844 0.958269485 0.66776999 0.970275373 1 11.74385744 -13.52287874 0.191252867 1.591630862 0.840158612 0.243361529 0.090810336 54.90571732 0.651547509 12.13826384 0.098168073 3.00E-14 13.52287874 -0.75147225 SPGSPVGEGTGS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 1 SPGSPVGEGTGSPPK 15 0 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;P35611-5;A0A0A0MSR2 E7EV99 ADD1 Alpha-adducin 1 0 SPGS(0.003)PVGEGT(0.347)GS(0.649)PPK 77.192 0.025786 10815000 913.72 909.02 719.05 905.41 1010.2 880.22 634.47 755.43 955.01 1034.4 TRUE FALSE FALSE 806.6151267 937.0258287 757.924018 942.3365333 935.6795586 863.43127 658.9417204 841.4250976 915.6440836 1028.247343 0.78445632 0.911284464 0.737102822 0.916449276 0.909975178 0.839711647 0.640839702 0.818310014 0.890490104 1 10.00597163 -13.52287874 0.268007456 2.324023747 0.799109783 0.191529479 0.088803809 34.36493498 0.460880037 24.22078059 0.043116909 3.00E-14 13.52287874 -1.524913964 SNVSSPAT(ph)PT(ph)ASSSSSTTPTRK ddPTM_HeLa_CUDC101_4h_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 S(0.004)NVS(0.026)S(0.089)PAT(0.848)PT(0.518)AS(0.032)S(0.075)S(0.073)S(0.074)S(0.072)T(0.081)T(0.079)PT(0.029)RK 56.428 0.010601 54929000 3215.3 2953.8 2869.9 2790.6 3766.2 3222.4 2480.6 1836.8 3022.4 3631.7 TRUE FALSE FALSE 2838.407408 3044.803077 3025.055475 2904.41273 3488.374929 3160.938089 2576.277573 2045.893887 2897.815393 3610.098487 0.78624099 0.843412746 0.837942645 0.804524514 0.966282483 0.875582231 0.713630828 0.566714148 0.802697046 1 11.81782248 -13.52287874 0.029737806 2.147938549 1.47E-07 0.213110153 0.103031287 960.9775036 2.295088095 125.473643 54.23781702 3.00E-14 13.52287874 -2.147938402 SFPSSPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 SFPSSPSK 8 0 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7;Q96KQ7-3 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 0 SFPS(0.14)S(0.088)PS(0.772)K 92.239 0.026376 16450000 7708.8 6149 7213.8 6554.5 6508.6 6233.9 5855.6 5670.4 7152.8 7776.1 TRUE FALSE FALSE 6805.18615 6338.443402 7603.799849 6821.820841 6028.473545 6114.998744 6081.452453 6315.895415 6857.958557 7729.847411 0.880377812 0.819995928 0.983693396 0.88252982 0.779895543 0.791089192 0.786749353 0.817078925 0.887204907 1 12.91622422 -13.52287874 0.04527222 1.780622049 0.419556905 0.370943434 0.059592981 233.5943862 0.840986915 23.59094746 6.628073816 3.00E-14 13.52287874 -1.361065144 KMDQFTDS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 KMDQFTDSSR 10 1 A0A1B0GU26 A0A1B0GU26 1 0 KMDQFTDS(0.5)S(0.5)R 80.688 0.025209 31852000 7916.1 4770.4 7493.7 6770.8 7057.9 5968.6 6767.1 4543.4 7888.9 8202.1 TRUE FALSE FALSE 6988.186758 4917.37037 7898.832089 7046.94249 6537.252778 5854.758899 7028.109314 5060.602291 7563.716203 8153.313544 0.857097758 0.60311312 0.968787971 0.86430412 0.801790921 0.718083374 0.86199424 0.620680446 0.927686169 1 12.99317078 -13.52287874 0.10015247 1.735341228 0.634069241 0.315376881 0.107458884 87.83587274 0.656432785 13.33248167 0.881482361 3.00E-14 13.52287874 -1.101271986 ALSGGGSVAS(ph)PPPSPAMPK ddPTM_HeLa_CUDC101_4h_R1 4 ALSGGGSVASPPPSPAMPK 19 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 ALS(0.001)GGGS(0.004)VAS(0.785)PPPS(0.209)PAMPK;ALS(0.001)GGGS(0.008)VAS(0.951)PPPS(0.04)PAMPK;ALSGGGS(0.002)VAS(0.998)PPPSPAMPK;ALSGGGSVAS(1)PPPSPAMPK ;;; 178.12 4.80E-08 38045000 9053.3 8031.3 8553.2 7515.1 8654.1 7948.3 6856.12 7357.4 8965.6 8982.3 TRUE FALSE FALSE 7992.085898 8278.734834 9015.611864 7821.598261 8015.704284 7796.69942 7120.562845 8194.936676 8596.034173 8928.87288 0.8950834 0.927186997 1.009714438 0.87598943 0.89772857 0.873200854 0.797476114 0.91780192 0.962723323 1 13.12426236 -13.52287874 0.072602995 1.365288636 0.761774586 0.402157474 0.046649686 148.2724638 0.833745256 9.192437419 1.235965102 3.00E-14 13.52287874 -0.60351405 LPS(ph)SPVYEDAASFK ddPTM_HeLa_CUDC101_4h_R1 3 LPSSPVYEDAASFK 14 0 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 1 0 LPS(0.995)S(0.005)PVYEDAASFK;LPS(0.5)S(0.5)PVYEDAASFK;LPS(0.626)S(0.374)PVYEDAASFK ;; 247.11 7.18E-56 1729661000 12116.2 10544.9 10286.4 10125.1 9468.8 9923.5 8755.5 8690.7 9826.3 13187.8 TRUE FALSE FALSE 10695.9574 10869.77587 10842.5139 10538.04534 8770.305489 9734.225771 9093.202568 9680.014159 9421.255755 13109.35838 0.815902433 0.829161547 0.827081966 0.803856683 0.66901104 0.742540214 0.693642077 0.738404877 0.718666428 1 13.67830946 -13.52287874 0.096194681 1.846742724 0.562920711 0 0.095245015 28.11658073 0.203027043 4.779352183 0.349153447 3.00E-14 13.52287874 -1.283822013 LPS(ph)DSER ddPTM_HeLa_CUDC101_4h_R1 1 LPSDSER 7 0 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 1 0 LPS(0.98)DS(0.02)ER 86.67 0.037225 33958000 2390.2 2174.3 2040.6 2698.3 1577 1860.4 2255.2 1562.5 2217.6 2689.4 TRUE FALSE FALSE 2110.024379 2241.287606 2150.921008 2808.348337 1460.667852 1824.91597 2342.183819 1740.368684 2126.189589 2673.403329 0.789265262 0.838364934 0.804562853 1.050476861 0.546370178 0.682619023 0.876105672 0.650993685 0.79531194 1 11.38446179 -13.52287873 0.135087965 1.784413039 0.681711336 0.080112145 0.139104967 67.11310969 0.636798371 14.13536337 0.399730166 3.00E-14 13.52287873 -1.102701703 NLSGST(ph)LYPVSNIPR ddPTM_HeLa_CUDC101_4h_R1 1 NLSGSTLYPVSNIPR 15 0 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 0 NLS(0.289)GS(0.09)T(0.62)LYPVSNIPR 135.57 0.0026496 55928000 1669.2 1526.8 1269.4 1177.6 1705.2 1595.8 1354.1 1070.9 1428.7 1649.6 TRUE FALSE FALSE 1473.538906 1573.838898 1338.027604 1225.627618 1579.410793 1565.362774 1406.328091 1192.806927 1369.808381 1639.788106 0.898615438 0.959781872 0.815975917 0.747430484 0.963179808 0.954612836 0.857627937 0.727415282 0.835356944 1 10.67929369 -13.52287873 0.094004131 1.464222316 0.755049602 0 0.091367152 118.6665996 0.84005804 10.89433299 0.841347758 3.00E-14 13.52287873 -0.709172714 AATAIMCDLCKPPPQESTKSCM ddPTM_HeLa_CUDC101_4h_R1 1 AATAIMCDLCKPPPQESTKSCM 22 2 D6RAU9 D6RAU9 TRIM36 0 0 38.888 0.031472 7585300 2791.3 2700.6 1633.4 1938.2 2506.5 2404.4 1848.9 2312.6 2229.5 11532 FALSE FALSE TRUE 2464.108045 2783.802285 1721.706545 2017.248174 2321.600489 2358.540076 1920.212692 2575.857036 2137.599066 11463.40715 0.214954246 0.242842486 0.15019152 0.175972828 0.202522728 0.20574512 0.167508025 0.224702569 0.18647153 1 13.48474828 -9.150590329 0.59997545 1.099580809 0.17855204 0 0.2526065 0.08192421 0.045422492 0.040861959 0.008153982 7.07E-10 9.150590329 -0.921028769 SGS(ph)PISSEERR ddPTM_HeLa_CUDC101_4h_R1 4 SGSPISSEERR 11 1 H8Y6P7;P0CAP2-3;P0CAP2;P0CAP1-11;P0CAP2-2 H8Y6P7 GCOM1;POLR2M DNA-directed RNA polymerase II subunit GRINL1A 1 0 S(0.042)GS(0.952)PIS(0.003)S(0.003)EERR;S(0.024)GS(0.976)PISSEERR;S(0.177)GS(0.822)PISSEERR;S(0.156)GS(0.843)PISSEERR ;;; 89.44 0.013703 52057000 9098.52 8776.6 8372.86 7988.5 8086.8 8805.02 8136.22 8452.3 9111.4 7467.07 TRUE FALSE FALSE 8032.005278 9046.996643 8825.522138 8314.305559 7490.252875 8637.078914 8450.036731 9414.475667 8735.824236 7422.655536 1.082093227 1.218835577 1.18899794 1.120125475 1.009106894 1.163610365 1.138411542 1.268343334 1.176913598 1 12.8577197 -13.52287873 0.093587593 0.471642606 1.268375598 0 0.088271885 96.12227264 0.677857409 9.871579467 0.770479113 3.00E-14 13.52287873 0.796732993 S(ph)PEPEATLTFPFLDK ddPTM_HeLa_CUDC101_4h_R1 4 SPEPEATLTFPFLDK 15 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK;S(1)PEPEATLTFPFLDK ;;; 207.66 2.04E-23 3277790000 5038.39 4688.24 4453.62 3988.05 4146.9 4394.73 4144.51 3227.98 4816.96 5336.33 TRUE FALSE FALSE 4447.797562 4832.679117 4694.396169 4150.699917 3840.991449 4310.907847 4304.365139 3595.440195 4618.40287 5304.589272 0.838481046 0.911037381 0.884968831 0.782473384 0.724088379 0.812675143 0.811441738 0.677798037 0.870642878 1 12.37302533 -13.52287873 0.052825157 1.849192809 0.393045968 0.533721851 0.060105907 141.0072538 0.588698188 16.72395861 3.821628309 3.00E-14 13.52287873 -1.456146841 DYLLS(ph)ES(ph)EDEGDNDGER ddPTM_HeLa_CUDC101_4h_R1 2 DYLLSESEDEGDNDGER 17 0 Q9BVJ6-3;Q9BVJ6 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 2 0 DY(0.013)LLS(0.988)ES(0.999)EDEGDNDGER;DY(0.001)LLS(0.999)ES(1)EDEGDNDGER ; 156.72 0.00060305 34188000 3068.36 2885.5 2664.76 2297.3 2960.57 2580.17 2732.43 2197.25 3180 3088.27 TRUE FALSE FALSE 2708.691492 2974.398835 2808.824986 2390.993824 2742.174649 2530.957556 2837.82074 2447.376058 3048.919054 3069.900833 0.882338434 0.968890852 0.914956261 0.778850508 0.893245352 0.824442773 0.924401437 0.79721665 0.993165324 1 11.58397634 -13.52287873 0.133397376 1.459560037 0.814285276 0.532035917 0.050963805 47.2342688 0.444007702 5.73679862 0.168817281 3.00E-14 13.52287873 -0.645274762 FLNRS(ph)PEESFDIK ddPTM_HeLa_CUDC101_4h_R1 1 FLNRSPEESFDIK 13 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 FLNRS(0.708)PEES(0.292)FDIK 106.58 0.001708 0 987.36 913.67 805.1 680.71 1102.4 684.73 768.62 686.29 926.02 1045.5 TRUE FALSE FALSE 871.6231575 941.8190897 848.6261413 708.4722961 1021.078148 671.6699161 798.2659309 764.4144795 887.8490637 1039.28132 0.83867875 0.906221513 0.816550943 0.681694439 0.982484847 0.646283065 0.768094178 0.735522197 0.854291371 1 10.02137051 -13.52287873 0.076676271 1.757732603 0.545953361 0.264536738 0.096577126 108.5215397 0.641331005 14.13927542 1.707934047 3.00E-14 13.52287873 -1.211779242 GREDVSNFDDEFTSEAPILT(ph)PPREPR ddPTM_HeLa_CUDC101_4h_R1 4 GREDVSNFDDEFTSEAPILTPPREPR 26 2 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 GREDVSNFDDEFT(0.001)S(0.001)EAPILT(0.998)PPREPR;GREDVSNFDDEFT(0.005)S(0.005)EAPILT(0.99)PPREPR;GREDVSNFDDEFTSEAPILT(1)PPREPR;GREDVS(0.001)NFDDEFT(0.381)S(0.097)EAPILT(0.521)PPREPR ;;; 67.76 0.00062193 683885000 2472.51 2106.93 2410.51 2237.63 2324.7 2080.02 2057.68 2474.32 2345.65 2040.46 TRUE FALSE FALSE 2182.686126 2171.842016 2540.829462 2328.890223 2153.211512 2040.347084 2137.045407 2755.986587 2248.961314 2028.323253 1.076103684 1.070757342 1.252674818 1.148184945 1.061572168 1.005927966 1.053601986 1.358751167 1.108778549 1 10.98607188 -13.52287873 0.052187845 0.456664778 1.381377406 0.076950078 0.102897969 456.3880683 1.883457129 34.10823497 7.93058828 3.00E-14 13.52287873 0.924712628 AAVELEEPEDAR ddPTM_HeLa_CUDC101_4h_R1 2 AAVELEEPEDAR 12 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 0 ; ; 215.06 4.37E-23 31977000 6008.8 5315.6 4849.8 5097.7 6100.1 6006.8 4694.7 4972.1 5239.1 5136.9 FALSE FALSE TRUE 5304.457573 5479.367335 5111.994858 5305.60624 5650.107776 5892.230298 4875.776152 5538.103766 5023.14208 5106.34549 1.038797234 1.073050648 1.001106343 1.039022183 1.106487563 1.153903571 0.954846506 1.084553283 0.983705879 1 12.31807544 -8.231179526 0.39229213 0.994420975 1.06542478 0.209000878 0.051768861 1.817367443 0.651762914 0.053545125 0.024470817 5.87E-09 8.231179526 0.071003804 SCTPSPDQISHRAS(ph)LEDAPVDDLTR ddPTM_HeLa_CUDC101_4h_R1 2 SCTPSPDQISHRASLEDAPVDDLTR 25 1 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 SCTPSPDQIS(0.26)HRAS(0.74)LEDAPVDDLTR;SCTPS(0.005)PDQIS(0.432)HRAS(0.562)LEDAPVDDLTR ; 104.42 7.68E-07 31646000 1698.3 1711.32 1272.73 1108.15 2002.49 1537.3 1592.75 1420.14 1623.42 1280.63 TRUE FALSE FALSE 1499.227848 1764.043741 1341.537634 1153.345147 1854.770302 1507.978564 1654.182901 1581.802997 1556.50194 1273.012756 1.17770057 1.385723539 1.053828901 0.905996536 1.456992708 1.18457459 1.299423665 1.242566494 1.222691551 1 10.31403116 -13.52287873 0.134959162 0.224155968 1.306422295 0 0.162892871 82.04161222 0.777897381 16.94048792 0.480508558 3.00E-14 13.52287873 1.082266328 LNTS(ph)DFQK ddPTM_HeLa_CUDC101_4h_R1 4 LNTSDFQK 8 0 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 1 0 LNT(0.086)S(0.914)DFQK;LNT(0.074)S(0.926)DFQK;LNT(0.073)S(0.927)DFQK;LNT(0.053)S(0.947)DFQK ;;; 155.53 0.0016462 1961100000 23288.7 18808.8 18940.8 18126.1 22611.4 21393.5 21407.2 18674.6 18556.8 18315.5 TRUE FALSE FALSE 20558.83389 19388.27683 19964.79694 18865.36071 20943.40207 20985.45463 22232.88287 20800.44098 17791.88085 18206.55859 1.129199337 1.064906184 1.096571702 1.036184879 1.150321845 1.152631593 1.221146916 1.14246967 0.977223716 1 14.15217063 -13.52287873 0.046853307 0.445781686 1.42913965 0.658862425 0.042496381 264.6538901 0.984881829 19.69514928 5.298393313 3.00E-14 13.52287873 0.983357964 YNTEGRVS(ph)PSPSQESLSSSK ddPTM_HeLa_CUDC101_4h_R1 3 YNTEGRVSPSPSQESLSSSK 20 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83;Q5JSH3-3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 Y(0.001)NT(0.001)EGRVS(0.988)PS(0.005)PS(0.005)QESLSSSK;Y(0.022)NT(0.009)EGRVS(0.952)PS(0.012)PS(0.004)QES(0.001)LSSSK;Y(0.001)NT(0.001)EGRVS(0.992)PS(0.006)PSQESLSSSK ;; 89.71 0.0011219 250984000 6870.06 6361.59 6860.58 6807.06 7440.33 6251.46 5307.79 5513.24 7537.53 7900.77 TRUE FALSE FALSE 6064.761981 6557.583048 7231.483707 7084.681329 6891.471679 6132.223816 5512.513238 6140.844956 7226.829823 7853.775869 0.772209709 0.83495928 0.920765225 0.902073276 0.877472415 0.780799442 0.701893373 0.781897148 0.920172659 1 12.93917071 -13.52287872 0.299114396 2.599414641 0.805227989 0.368656659 0.068135162 31.30030442 0.423643334 30.13417403 0.030607314 3.00E-14 13.52287872 -1.794186652 ATSSSSGS(ph)LSATGR ddPTM_HeLa_CUDC101_4h_R1 2 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 ATSSS(0.005)S(0.083)GS(0.704)LS(0.208)ATGR;ATSSS(0.002)S(0.083)GS(0.91)LS(0.004)ATGR ; 193.11 1.35E-12 29698000 3144.9 2499.5 2847.9 2838.3 3091.8 2509.4 2197.7 2404 2673.7 3244.9 TRUE FALSE FALSE 2776.259589 2576.506632 3001.866088 2954.058142 2863.724074 2461.537376 2282.466025 2677.661643 2563.488954 3225.59919 0.860695773 0.798768378 0.930638282 0.915816866 0.887811506 0.763125618 0.707609932 0.830128446 0.794732638 1 11.65535147 -13.52287872 0.045922108 1.76692312 0.419590083 0 0.084207662 281.8865382 1.028904809 28.41054278 7.840891288 3.00E-14 13.52287872 -1.347333037 RESESES(ph)DETPPAAPQLIK ddPTM_HeLa_CUDC101_4h_R1 1 RESESESDETPPAAPQLIK 19 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 RES(0.14)ES(0.205)ES(0.455)DET(0.2)PPAAPQLIK 92.913 0.0014843 6030500 1871.5 1501.2 1779.7 1384.6 1424.6 1361.6 1176.2 1122 1924.4 2257.4 TRUE FALSE FALSE 1652.125607 1547.450193 1875.915965 1441.069973 1319.510096 1335.629749 1221.566428 1249.723945 1845.075417 2243.972884 0.736250254 0.689602893 0.835979783 0.642195805 0.588024082 0.595207615 0.544376644 0.556924709 0.822236057 1 11.13183953 -13.52287872 0.06597276 2.402774113 0.09954101 0.721938726 0.073898139 52.88553968 0.27223451 11.59905739 1.859601174 3.00E-14 13.52287872 -2.303233103 AGLAS(ph)PEEEDAVGKEPLK ddPTM_HeLa_CUDC101_4h_R1 2 AGLASPEEEDAVGKEPLK 18 1 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 0 AGLAS(1)PEEEDAVGKEPLK;AGLAS(1)PEEEDAVGKEPLK ; 63.392 0.018799 43305000 4180.5 3865.1 3719.9 3039.4 3848.5 4160.9 3225.9 2874.9 4212.1 4232.5 TRUE FALSE FALSE 3690.468127 3984.17915 3921.009046 3163.359869 3564.603822 4081.537765 3350.324044 3202.166995 4038.475455 4207.324902 0.877153111 0.946962558 0.931948242 0.751869642 0.847237593 0.970102823 0.796307421 0.761093348 0.959867742 1 12.03868752 -13.52287872 0.052658886 1.5949038 0.568732935 0.440798864 0.064562736 268.2934791 1.116748724 22.37910183 5.137094676 3.00E-14 13.52287872 -1.026170865 AAVPAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 AAVPAKR 7 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2;S4R3C2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ; AAVPAK(1)R;AAVPAK(1)R 106.76 0.0099993 4475000 701.28 452.65 95.278 1004.42 707.6 711.6 831.71 727.81 174.152 0 FALSE TRUE FALSE 619.0770215 466.59561 100.4290169 1045.384589 655.4017577 698.0274156 863.7893333 810.6609485 166.9733808 0 0 VGDST(ph)PVSEKPVSAAVDANASES(ph)P ddPTM_HeLa_CUDC101_4h_R1 2 VGDSTPVSEKPVSAAVDANASESP 24 1 Q9H8Y8-2;Q9H8Y8;Q9H8Y8-3 Q9H8Y8-2 GORASP2 Golgi reassembly-stacking protein 2 2 0 VGDS(0.17)T(0.727)PVS(0.096)EKPVS(0.007)AAVDANAS(0.037)ES(0.963)P;VGDS(0.247)T(0.564)PVS(0.188)EKPVS(0.001)AAVDANAS(0.062)ES(0.938)P ; 95.302 2.73E-05 23702000 5821.8 4789.2 4396 4480.7 5494.2 4863 4735.1 3718.9 4874.7 5684.9 TRUE FALSE FALSE 5139.377429 4936.749575 4633.661057 4663.442313 5088.903812 4770.246377 4917.734393 4142.244544 4673.762803 5651.085962 0.909449522 0.873593077 0.8199594 0.825229406 0.900517856 0.844129148 0.870228205 0.732999741 0.827055691 1 12.46431242 -13.52287872 0.068411466 1.606902459 0.627614744 0 0.06819809 86.6725927 0.461422095 8.312936679 1.248953123 3.00E-14 13.52287872 -0.979287715 AAVPSGASTGIYEALELR ddPTM_HeLa_CUDC101_4h_R1 2 AAVPSGASTGIYEALELR 18 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798;F5H1C3;E5RI09;P09104-2;K7EPM1;K7EKN2;E5RGZ4;F5H0C8;P09104;E5RG95;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO2;ENO3 Alpha-enolase;Enolase;Gamma-enolase;Beta-enolase 0 0 ; ; 153.32 0.00028474 47493000 1466.25 1308.23 1251.19 1093.64 1596.6 1281.66 1309.58 1467.96 1441.91 1394.1 FALSE FALSE TRUE 1294.378398 1348.535016 1318.833116 1138.243366 1478.821999 1257.214471 1360.090939 1635.066633 1382.473859 1385.807831 0.93402445 0.973103908 0.951670994 0.821357291 1.067119095 0.907206932 0.981442671 1.179865343 0.997594203 1 10.4365115 -4.268736693 4.398023089 0.960014675 1.194116455 0.541368725 0.061197823 0.108594495 5.081720062 0.007893784 0.078035854 5.39E-05 4.268736693 0.23410178 AAVSWLTPAPSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AAVSWLTPAPSKK 13 1 Q9H9L3 Q9H9L3 ISG20L2 Interferon-stimulated 20 kDa exonuclease-like 2 0 1 ; AAVSWLTPAPSK(1)K;AAVSWLTPAPSK(1)K 184.55 3.14E-08 763420 626.27 858.28 748.62 689.21 782.53 583.86 699.89 747.32 399.88 808.79 FALSE TRUE FALSE 552.85958 884.7225895 789.0926617 717.3189628 724.8043209 572.7238433 726.8849917 832.391888 383.3967771 803.9792811 0.687654014 1.100429589 0.981483827 0.892210757 0.901521144 0.712361446 0.904109109 1.035339974 0.476873952 1 9.651014513 -7.268290503 24.91707778 0.852503293 0.922078993 0.126878898 0.168467505 1437.134262 5226753.764 0.025634009 0.029662831 5.39E-08 7.268290503 0.0695757 AAVTPGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 AAVTPGKK 8 1 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 AAVTPGK(1)K 103.83 0.0099451 292650000 6147.5 7149.2 11536 13814 12156 11520 13053 9176.2 3129 2610.2 FALSE TRUE FALSE 5426.899369 7369.458378 12159.67105 14377.39463 11259.2761 11300.27519 13556.45858 10220.78152 3000.021296 2594.674414 2.091553121 2.840224707 4.686395714 5.541117047 4.339379167 4.355180415 5.224724346 3.93913836 1.156222638 1 11.3413378 -7.079916916 1.468382342 1.422100263 4.746267047 0.894377234 0.506998743 0.08849864 0.369005201 0.103765887 0.13269144 8.32E-08 7.079916916 3.324166784 TCGVNDDES(ph)PSKIFMVGESPQVSSR ddPTM_HeLa_CUDC101_4h_R1 1 TCGVNDDESPSKIFMVGESPQVSSR 25 1 Q8NG08 Q8NG08 HELB DNA helicase B 1 0 T(0.001)CGVNDDES(0.764)PS(0.234)KIFMVGES(0.001)PQVSSR 54.985 0.0067622 7438300 447.88 414.97 358.05 396.44 496.28 283.47 453.01 404.32 608.77 330.63 TRUE FALSE FALSE 395.3801853 427.7547338 377.407266 412.6085368 459.6704131 278.063282 470.4827474 450.3461545 583.6762429 328.6633981 1.202994272 1.301497935 1.14830939 1.255413713 1.39860543 0.846042741 1.431503326 1.370235192 1.775908867 1 8.360466988 -13.52287872 0.164598631 0.009966426 1.309485117 0 0.292552199 59.17067545 0.643383616 18.6651668 0.268898383 3.00E-14 13.52287872 1.299518691 LTDCVVMRDPASK(ac)R ddPTM_HeLa_CUDC101_4h_R1 4 LTDCVVMRDPASKR 14 2 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 1 ;;; LTDCVVMRDPASK(1)R;LTDCVVMRDPASK(1)R;LTDCVVMRDPASK(1)R;LTDCVVMRDPASK(1)R 120.59 0.0079274 41901600 7520.56 7933.37 7478.23 8278.6 11553.3 8977.52 9086.3 9439.6 6852.66 5006.64 FALSE TRUE FALSE 6639.011357 8177.787726 7882.525734 8616.237091 10701.03608 8806.288764 9436.761635 10514.16591 6570.190454 4976.860283 1.333975836 1.643162006 1.583835046 1.73125959 2.150158025 1.769446652 1.896127498 2.112610222 1.32014766 1 12.28102017 -7.054825301 0.435975955 1.006742451 2.056344342 0.804788799 0.151839994 0.203593382 0.095533037 0.055279488 0.078247197 8.81E-08 7.054825301 1.049601891 AAVVVSK(ac)SGSLKK ddPTM_HeLa_CUDC101_4h_R1 1 AAVVVSKSGSLKK 13 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 AAVVVSK(0.995)SGSLK(0.005)K 89.747 0.037693 869420 379.68 376.46 456.43 820.91 821.15 766.93 815.33 1121.1 0 163.9 FALSE TRUE FALSE 335.174486 388.0582864 481.1059864 854.3902581 760.5754005 752.302088 846.7775512 1248.721492 0 162.9251155 2.05723031 2.381819925 2.952927085 5.244067223 4.668251412 4.617471565 5.197342034 7.664389179 0 1 7.348065208 -2.924519641 0.198058202 0.488801566 17.3697319 0.897229362 0.701973768 5.249593747 0.11684824 0.733628069 23.75490524 0.001189818 2.924519641 16.88093033 AAWGEETDYTPVWCMR ddPTM_HeLa_CUDC101_4h_R1 1 AAWGEETDYTPVWCMR 16 0 H0Y5R6;Q5T446;A0A1B0GVN9;A0A1B0GVZ4;A0A494C085;P06132;A0A494C0P4;A0A494C007 H0Y5R6 UROD Uroporphyrinogen decarboxylase 0 0 127.56 0.00031199 0 473.79 283.83 230.94 271.9 221.35 423.27 219.67 218.16 370.31 359.2 FALSE FALSE TRUE 418.2530544 292.5744659 243.425315 282.9892573 205.0214515 415.19683 228.1427455 242.9944526 355.0456651 357.0634624 1.171368954 0.819390659 0.681742437 0.792546107 0.574187709 1.162809623 0.638941727 0.680535754 0.994348911 1 8.480036703 -7.153770687 5.196077198 1.080487027 0.761502256 0.417982996 0.157520719 0.144841364 5.844914775 0.025709763 0.031607584 7.02E-08 7.153770687 -0.318984772 AAYEAELGDAR ddPTM_HeLa_CUDC101_4h_R1 4 AAYEAELGDAR 11 0 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;; ;;; 183.43 6.76E-10 109867200 10848.7 9736.2 9612.9 9274.9 9652.9 8553.8 7916.9 9073.8 9810.4 11045.2 FALSE FALSE TRUE 9577.031832 10036.16078 10132.60245 9653.170512 8940.824798 8390.650517 8222.257485 10106.72471 9406.01116 10979.50266 0.872264631 0.914081548 0.92286534 0.879199251 0.814319653 0.764210436 0.7488734 0.920508426 0.856688272 1 13.42252509 -13.52287875 0.091654985 1.532605965 0.711314787 0.108958695 0.068988777 75.05936637 0.519828211 7.788087114 0.638540388 3.00E-14 13.52287875 -0.821291179 AQPQDSATFAHT(ph)PPPAQATPAPGFK ddPTM_HeLa_CUDC101_4h_R1 2 AQPQDSATFAHTPPPAQATPAPGFK 25 0 A0A0A0MQV9;Q9UPS6-2;Q9UPS6 A0A0A0MQV9 SETD1B Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase SETD1B 1 0 AQPQDS(0.002)AT(0.001)FAHT(0.997)PPPAQATPAPGFK;AQPQDS(0.062)AT(0.065)FAHT(0.872)PPPAQATPAPGFK ; 70.632 0.00073755 20181000 5126.2 4801.9 4045.7 4510.4 4808.4 4574.4 5041.2 4076.5 4253.7 4202.5 TRUE FALSE FALSE 4525.314607 4949.840847 4264.42278 4694.353608 4453.693912 4487.150941 5235.640773 4540.552282 4078.360686 4177.503343 1.083258165 1.184880164 1.020806551 1.123722286 1.066113788 1.074122645 1.253294215 1.086905721 0.976267486 1 12.02842527 -13.52287871 0.104610751 0.603151467 1.192782891 0.391826633 0.062100684 87.96416583 0.68191184 7.473571428 0.441964377 3.00E-14 13.52287871 0.589631424 LTPSPDIIVLS(ph)DNEASSPR ddPTM_HeLa_CUDC101_4h_R1 4 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LTPSPDIIVLS(1)DNEASSPR;LTPSPDIIVLS(1)DNEASSPR;LTPSPDIIVLS(0.998)DNEASS(0.001)PR;LTPSPDIIVLS(0.999)DNEAS(0.001)SPR ;;; 228.19 9.93E-34 62155500 4345.48 3394.26 3719.71 3759.04 4164.91 3744.42 3132.34 3203.88 3775.45 4308.06 TRUE FALSE FALSE 3836.109422 3498.833127 3920.808774 3912.349899 3857.672887 3673.001427 3253.155403 3568.596749 3619.824353 4282.435468 0.89577752 0.817019463 0.915555834 0.913580585 0.900812847 0.857689848 0.759650771 0.833310105 0.845272364 1 12.06421579 -13.52287871 0.059423946 1.563627767 0.616661551 0.005507147 0.062621767 141.2935972 0.659536476 11.79850892 2.254794644 3.00E-14 13.52287871 -0.946966216 NIIGSS(ph)PVADFSAIK ddPTM_HeLa_CUDC101_4h_R1 2 NIIGSSPVADFSAIK 15 0 P42566;B1AUU8 P42566 EPS15 Epidermal growth factor receptor substrate 15 1 0 NIIGS(0.11)S(0.889)PVADFSAIK;NIIGS(0.077)S(0.923)PVADFSAIK ; 180.93 1.35E-10 74294000 7012.1 6090.8 4903 5691.6 6250.4 6702.3 4862.6 4895.4 5845.2 6911.9 TRUE FALSE FALSE 6190.152268 6278.450329 5168.071011 5923.728049 5789.320445 6574.464794 5050.152111 5452.672548 5604.258382 6870.787711 0.900937786 0.913789014 0.752180278 0.862161414 0.842599231 0.95687206 0.735017923 0.793602244 0.81566461 1 12.74625979 -13.52287871 0.073592471 1.604286707 0.641025049 0 0.085379411 114.4011561 0.651295498 11.44717857 1.49948128 3.00E-14 13.52287871 -0.963261657 LSYLSAPGSEY(ph)SMYSTDSR ddPTM_HeLa_CUDC101_4h_R1 1 LSYLSAPGSEYSMYSTDSR 19 0 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 LSYLSAPGS(0.054)EY(0.238)S(0.054)MY(0.179)S(0.153)T(0.229)DS(0.092)R 76.326 0.026876 7875300 1578.1 1495.5 1077.4 1323.7 1600 1285.1 1124.7 1104.6 1715.4 1629 TRUE FALSE FALSE 1393.11751 1541.574582 1135.647503 1377.686208 1481.971188 1260.588859 1168.080056 1230.343199 1644.690486 1619.310636 0.860315173 0.951994354 0.70131541 0.850785623 0.915186472 0.778472537 0.721344028 0.759794429 1.015673244 1 10.66116405 -13.5228787 0.04356977 1.922928339 0.304640482 0.616464596 0.066792344 282.3408198 0.979502061 33.18628267 9.771183824 3.00E-14 13.5228787 -1.618287858 ACGVSRPVIACSVTIK ddPTM_HeLa_CUDC101_4h_R1 2 ACGVSRPVIACSVTIK 16 1 B1AHD1;A0A3B3IUA2;P55769;A0A3B3IRU2 B1AHD1 NHP2L1 "NHP2-like protein 1;NHP2-like protein 1, N-terminally processed" 0 0 ; ; 130.47 0.017774 2778600 563.07 559.09 345.5 316.13 583.06 370.49 383.89 446.23 263.27 126.78 FALSE FALSE TRUE 497.0677882 576.3149002 364.1787751 329.0231478 540.0488254 363.4235205 398.6967659 497.0270195 252.4178992 126.0259069 3.944171483 4.572987525 2.889713583 2.610758025 4.285220703 2.883720732 3.163609575 3.943847988 2.002904842 1 6.977576526 -5.812036109 24.92030671 2.65996115 3.491183161 0.098311191 0.993125628 212.0872837 104458.199 0.201468827 0.365193699 1.54E-06 5.812036109 0.83122201 EAATQEDPEQLPELEAHGVS(ph)ESEGEERPVAEEEILLR ddPTM_HeLa_CUDC101_4h_R1 3 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR 37 1 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 EAATQEDPEQLPELEAHGVS(0.5)ES(0.5)EGEERPVAEEEILLR;EAATQEDPEQLPELEAHGVS(0.5)ES(0.5)EGEERPVAEEEILLR;EAATQEDPEQLPELEAHGVS(0.958)ES(0.042)EGEERPVAEEEILLR ;; 98.289 1.41E-13 110682800 3369.13 3360.54 2545.91 2807.67 3718.46 3093.64 2855.01 2995.42 3391.65 2835.72 TRUE FALSE FALSE 2974.205689 3464.074254 2683.549596 2922.178918 3444.156614 3034.633971 2965.128692 3336.406505 3251.844751 2818.853011 1.055112018 1.228894958 0.952000542 1.036655302 1.221829092 1.076549206 1.051891915 1.183604286 1.153605647 1 11.46089254 -13.5228787 0.078805067 0.625462556 1.212128895 0 0.096128473 213.2762912 1.29198677 13.77343861 1.573607567 3.00E-14 13.5228787 0.586666339 ACLISLGYDVENDRQGEAEFNR ddPTM_HeLa_CUDC101_4h_R1 2 ACLISLGYDVENDRQGEAEFNR 22 1 O43707;O43707-2;F5GXS2;O43707-3 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 209.19 3.99E-26 52762000 1718.96 1673.8 1456.72 1518.17 1676.84 1588.18 1479.07 1644.8 1537.42 1507.73 FALSE FALSE TRUE 1517.466115 1725.367794 1535.47469 1580.087535 1553.142854 1557.888113 1536.118225 1832.037383 1474.046897 1498.761955 1.01247974 1.151195351 1.024495374 1.054261839 1.03628388 1.039449999 1.024924752 1.222367153 0.983509684 1 10.54955555 -4.261358653 24.20372781 1.025369255 1.22236719 0.606192703 0.044212338 2.053018741 613776.0198 0.006276182 0.048223423 5.48E-05 4.261358653 0.196997936 SPGS(ph)PPGPELPIETALDDRER ddPTM_HeLa_CUDC101_4h_R1 1 SPGSPPGPELPIETALDDRER 21 1 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-5;Q8TEW0-9;Q8TEW0-8;Q5VWU8;Q8TEW0-10;B1AP52;F5GZI3 Q5VWV2;F5GZI3 PARD3 Partitioning defective 3 homolog 1 0 S(0.45)PGS(0.55)PPGPELPIETALDDRER 86.761 0.00053158 13576000 2293.7 2295.2 2102.7 1652.4 1973.9 1679.2 1850.1 1298.4 2067.9 2718.4 TRUE FALSE FALSE 2024.835963 2365.912392 2216.378322 1719.792014 1828.28933 1647.172058 1921.458977 1446.204608 1982.660287 2702.230836 0.749320131 0.875540446 0.820203179 0.636434161 0.676585177 0.609560085 0.711063967 0.535189144 0.733712405 1 11.39993521 -13.52287869 0.050914083 2.336276817 0.031898503 0.38648652 0.101161006 131.6370757 0.530569402 24.13695941 5.810465041 3.00E-14 13.52287869 -2.304378314 ACQSIYPLHDVFVR ddPTM_HeLa_CUDC101_4h_R1 2 ACQSIYPLHDVFVR 14 0 H0Y9Y4;P61247;D6R9B6;D6RAT0;D6RG13;D6RB09 H0Y9Y4 RPS3A 40S ribosomal protein S3a 0 0 ; ; 119.62 0.0013742 59767000 7523.2 5850.2 5467.7 5252.3 6976.8 6371.8 5931 5830.6 6352.8 4466.4 FALSE FALSE TRUE 6641.3419 6030.437728 5763.300401 5466.511496 6462.135364 6250.268531 6159.760657 6494.331936 6090.934895 4439.833654 1.495853768 1.358257583 1.298089264 1.231242412 1.455490423 1.40777088 1.38738546 1.462742175 1.371883582 1 12.11628991 -9.387604575 1.007126744 0.990047024 1.389843577 0.034843282 0.135273311 0.21808778 0.379773398 0.064899008 0.015062221 4.10E-10 9.387604575 0.399796553 EIT(ph)ALAPSTMK ddPTM_HeLa_CUDC101_4h_R1 1 EITALAPSTMK 11 0 P60709;P63267-2;A0A2R8YFE2;P63267;P68133;P68032;P62736;A6NL76;P63261 P60709;P63267;P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 EIT(1)ALAPSTMK 139.46 0.00696 26308000 5292.5 4941 3448.8 4194.3 4090.7 4426.1 4857.1 4754.6 3586.9 3826.6 TRUE FALSE FALSE 4672.121173 5093.226353 3635.25256 4365.361683 3788.937211 4341.679517 5044.439974 5295.844445 3439.046464 3803.839213 1.228264632 1.338969938 0.955679869 1.147619928 0.996082379 1.141394069 1.326144375 1.392236672 0.904098799 1 11.89324055 -13.52287869 0.029584897 2.43E-07 1.900959851 0.310532392 0.137835588 1563.728417 3.715717124 180.3343322 78.28610715 3.00E-14 13.52287869 1.900959608 T(ph)HPYSPK ddPTM_HeLa_CUDC101_4h_R1 1 THPYSPK 7 0 M0QZ39;M0R1C6;H0YD59;E9PME6;M0QXT0;B1AQP1;B4DLJ1;Q15853-4;P22415-2;Q15853-3;P22415;Q15853-2;Q15853 M0QZ39 USF2;USF1 Upstream stimulatory factor 2;Upstream stimulatory factor 1 1 0 T(0.997)HPY(0.002)S(0.001)PK 93.162 0.0016843 0 5485.1 1783.9 8136.7 7835 4303.2 4021.3 5105.5 1791.2 7622.6 9771.9 TRUE FALSE FALSE 4842.144893 1838.859845 8576.594614 8154.545166 3985.761509 3944.600402 5302.420845 1995.102968 7308.393202 9713.776304 0.498482232 0.189304323 0.88293104 0.839482495 0.410320496 0.406083101 0.545866065 0.205389017 0.752374048 1 13.24581655 -13.52287867 0.220810523 3.689343526 0.432239248 0.271981667 0.229670476 34.91046254 0.442863916 40.4540904 0.178229091 3.00E-14 13.52287867 -3.257104278 RQEQPSIEST(ph)SPISR ddPTM_HeLa_CUDC101_4h_R1 1 RQEQPSIESTSPISR 15 1 Q5T5P2;Q5T5P2-3 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 RQEQPS(0.007)IES(0.114)T(0.664)S(0.215)PISR 95.755 0.036039 7979300 2158.2 1797.6 2167.3 2186.4 2396 2122.7 1522.5 1687.3 2393.6 2266.5 TRUE FALSE FALSE 1905.219068 1852.981925 2284.470794 2275.570842 2219.251854 2082.213034 1581.223335 1879.375412 2294.934795 2253.018757 0.845629474 0.822444074 1.013959953 1.010009719 0.985012595 0.92418806 0.70182431 0.834158795 1.018604389 1 11.13764361 -13.52287866 0.014973649 2.037274708 1.68E-13 0.212805956 0.091828059 7822.005942 9.459732926 794.4443044 520.0361648 3.00E-14 13.52287866 -2.037274708 TLDSGTSEIVKS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 TLDSGTSEIVKSPR 14 1 Q9H501 Q9H501 ESF1 ESF1 homolog 1 0 TLDSGTSEIVKS(1)PR;TLDSGTSEIVKS(1)PR ; 203.27 2.70E-16 107690000 4415 4288.4 4303.3 3869.2 4763.9 3815.6 3809.1 3087.2 5174 4728.6 TRUE FALSE FALSE 3897.480393 4420.520521 4535.949415 4027.0027 4412.476588 3742.823787 3956.018263 3438.634369 4960.72553 4700.474077 0.829167511 0.940441421 0.964998283 0.85672267 0.938730119 0.796265169 0.841621121 0.731550544 1.055367065 1 12.19859056 -13.52287865 0.020633833 2.087878658 1.82E-09 0.546064754 0.06417593 1900.521001 3.161810935 213.6508224 119.2273135 3.00E-14 13.52287865 -2.087878656 RTPAPPEPGS(ph)PAPGEGPSGR ddPTM_HeLa_CUDC101_4h_R1 2 RTPAPPEPGSPAPGEGPSGR 20 1 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 0 RTPAPPEPGS(0.998)PAPGEGPS(0.002)GR;RT(0.041)PAPPEPGS(0.958)PAPGEGPS(0.001)GR ; 98.747 0.00047928 144258000 4157.09 5764.9 3183.84 4953.3 3972.2 3827.07 3472.2 3371.3 4440.4 6888.9 TRUE FALSE FALSE 3669.802212 5942.509736 3355.968021 5155.316984 3679.17872 3754.075016 3606.123917 3755.075165 4257.364833 6847.924516 0.535899922 0.867782599 0.490070826 0.752829119 0.53726917 0.54820625 0.526601003 0.548352301 0.621701484 1 12.74145108 -13.52287863 0.254995532 3.696543537 0.551663029 0 0.164368396 19.77593642 0.262608809 26.86709825 0.060965268 3.00E-14 13.52287863 -3.144880508 T(ph)LSESFSR ddPTM_HeLa_CUDC101_4h_R1 1 TLSESFSR 8 0 O94921 O94921 CDK14 Cyclin-dependent kinase 14 1 0 T(0.761)LS(0.207)ES(0.032)FSR 128.6 0.028167 5619600 2077.8 1826.4 1483.7 1521.2 1925.9 2061 1641.8 1795.6 1679.8 1538.7 TRUE FALSE FALSE 1834.243434 1882.669219 1563.91331 1583.241111 1783.830194 2021.689859 1705.124776 2000.003846 1610.557933 1529.547744 1.199206394 1.230866592 1.022467796 1.035104081 1.166246821 1.321756622 1.114790161 1.307578566 1.052963492 1 10.57888943 -13.52287861 0.234279714 2.41E-09 1.197216609 0.287446091 0.094729577 43.37486933 0.562289477 20.00432464 0.067539093 3.00E-14 13.52287861 1.197216606 AEQGS(ph)EEEGEGEEEEEEGGESK ddPTM_HeLa_CUDC101_4h_R1 4 AEQGSEEEGEGEEEEEEGGESK 22 0 Q8NE71;Q5STZ8 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 AEQGS(1)EEEGEGEEEEEEGGESK;AEQGS(1)EEEGEGEEEEEEGGESK;AEQGS(1)EEEGEGEEEEEEGGESK;AEQGS(1)EEEGEGEEEEEEGGESK ;;; 163.75 5.95E-08 65766000 15936.5 13843.6 14283.7 13080.8 11985.5 13771.7 12123.6 11196.9 13699.9 16641.7 TRUE FALSE FALSE 14068.44763 14270.10491 15055.92003 13614.29156 11101.35354 13509.02777 12591.21131 12471.50984 13135.18432 16542.71443 0.850431632 0.862621728 0.910123915 0.822978092 0.671072066 0.816614941 0.76113333 0.753897427 0.794016265 1 14.01390836 -13.5228786 0.069734725 1.759229948 0.525305487 0.118486079 0.080652165 84.20446774 0.456278762 10.33153411 1.49864434 3.00E-14 13.5228786 -1.23392446 DIDNNLITST(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 DIDNNLITSTPR 12 0 Q05D32;H0YMH7;Q05D32-2;H0YNU2;H0YNW9 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 DIDNNLIT(0.127)S(0.017)T(0.857)PR 108.32 0.029799 6819800 1719.9 1514.1 1411.1 1656.1 1831.3 1767 1264.2 1004.9 1552.2 1914.2 TRUE FALSE FALSE 1518.295929 1560.747626 1487.388334 1723.642916 1696.208647 1733.297419 1312.960617 1119.293754 1488.217659 1902.814253 0.797921251 0.820231204 0.781678155 0.905838767 0.891421033 0.910912569 0.690009871 0.588230697 0.782113996 1 10.89391902 -13.52287859 0.030115281 2.158798463 8.63E-07 0.150579143 0.103879988 883.6211711 2.136712518 116.5332966 49.84455925 3.00E-14 13.52287859 -2.1587976 GEGDAPFSEPGTTSTQRPSS(ph)PETATK ddPTM_HeLa_CUDC101_4h_R1 1 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GEGDAPFSEPGT(0.006)T(0.006)S(0.007)T(0.008)QRPS(0.271)S(0.636)PET(0.062)AT(0.003)K 78.108 6.79E-05 184780000 3865.5 3039.6 3362.6 3321.1 2734.6 3141.6 3142 2411.6 3278.5 4013.2 TRUE FALSE FALSE 3412.39195 3133.246473 3544.392327 3456.548813 2532.874006 3081.679214 3263.187992 2686.126796 3143.358842 3989.329308 0.855379861 0.785406827 0.888468225 0.866448605 0.63491224 0.772480529 0.817979099 0.673327918 0.787941681 1 11.9619305 -13.52287858 0.064837364 1.863617097 0.448476553 0.127076631 0.09313542 110.8328474 0.561383849 14.73972221 2.435879358 3.00E-14 13.52287858 -1.415140544 AGFNYESPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 AGFNYESPSK 10 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;H0YC29;E5RJ97;E7EVN4;F8W8T0 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 AGFNYES(0.346)PS(0.653)K 99.5 0.016796 23304000 2448.4 1999.4 2026.1 1923.4 2106.4 1898.9 1458.8 1624.4 2384.4 3292.1 TRUE FALSE FALSE 2161.402264 2060.999144 2135.637095 2001.844566 1951.015069 1862.681646 1515.066405 1809.31513 2286.114023 3272.518443 0.660470613 0.629789925 0.652597421 0.611713761 0.596181535 0.569189045 0.462966498 0.552881569 0.698579416 1 11.67618561 -13.52287851 0.14435671 2.563935996 0.432467124 0.418943051 0.10234328 8.521525501 0.084835893 3.752894118 0.085514311 3.00E-14 13.52287851 -2.131468872 ADDADEFGYSR ddPTM_HeLa_CUDC101_4h_R1 2 ADDADEFGYSR 11 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 0 ; ; 242.12 5.21E-43 150623000 6837.1 5611 6088.8 6204.1 6212.2 5884.3 6049.5 5415 6374.7 5572.1 FALSE FALSE TRUE 6035.665502 5783.868259 6417.978946 6457.130014 5753.938382 5772.066781 6282.831241 6031.421712 6111.932168 5538.956901 1.089675477 1.044216152 1.158698119 1.16576643 1.038812629 1.04208552 1.134298633 1.088909305 1.103444615 1 12.4353986 -9.013716219 0.591150252 0.991162709 1.098502974 0 0.053961325 0.828863686 0.477452532 0.04666827 0.01090309 9.69E-10 9.013716219 0.107340265 ADDGRPFPQVIK ddPTM_HeLa_CUDC101_4h_R1 1 ADDGRPFPQVIK 12 1 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8;H3BR04;H3BMQ8;H3BU78 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 84.188 0.036185 72830000 2756 2598.8 2135.5 2323 2399.8 2575.2 2722.6 2666.1 2573.7 2725.1 FALSE FALSE TRUE 2432.945858 2678.865948 2250.95159 2417.741981 2222.771535 2526.082351 2827.611594 2969.598047 2467.610997 2708.890984 0.898133543 0.988916115 0.830949493 0.89252096 0.820546692 0.932515323 1.043826278 1.096241253 0.910930344 1 11.40348662 -4.666567212 3.61649996 0.930125218 1.085162982 0.540018788 0.05764144 0.167108231 4.083760667 0.009494114 0.04189067 2.15E-05 4.666567212 0.155037765 ADDLGKGGNEESTK ddPTM_HeLa_CUDC101_4h_R1 2 ADDLGKGGNEESTK 14 1 H7BYH4;P00441 H7BYH4 SOD1 Superoxide dismutase [Cu-Zn] 0 0 ; ; 111.72 0.0023489 8543900 3714.3 3067.17 5340.3 5060.3 5012.7 3342.05 4540.9 3081.1 5356.2 672.69 FALSE FALSE TRUE 3278.915385 3161.665872 5629.012772 5266.680906 4642.923108 3278.305964 4716.044034 3431.83997 5135.415169 668.68881 4.903499708 4.728157291 8.417985598 7.87613136 6.943324067 4.902588343 7.052673776 5.13219291 7.679828184 1 9.385191165 -8.376266887 0.59453278 1.068671524 6.639079945 0 2.324971268 0.285474808 0.215737237 0.729496267 0.337264252 4.20E-09 8.376266887 5.57040842 ADDLLPLGDQTQDGDFGSR ddPTM_HeLa_CUDC101_4h_R1 1 ADDLLPLGDQTQDGDFGSR 19 0 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 0 0 146.27 0.00027534 9195900 3257.9 3583.6 3047.3 3021.3 3183.2 3328.4 3065.5 2841.1 3254.2 3455.1 FALSE FALSE TRUE 2876.013901 3694.006468 3212.046256 3144.521673 2948.381678 3264.916315 3183.737362 3164.51934 3120.060499 3434.548912 0.837377477 1.075543416 0.935216338 0.915555945 0.85844801 0.950609934 0.926973947 0.921378446 0.908433852 1 11.74590491 -6.257787798 8.344018489 0.935928742 0.914143305 0.05346908 0.062222493 0.571581184 467.4494228 0.011689183 0.018727625 5.52E-07 6.257787798 -0.021785437 TNNNQILEVKS(ph)PIK ddPTM_HeLa_CUDC101_4h_R1 2 TNNNQILEVKSPIK 14 1 P42568-2;P42568;A0A0D9SF09;B1APT5 P42568-2 MLLT3 Protein AF-9 1 0 TNNNQILEVKS(1)PIK;TNNNQILEVKS(1)PIK ; 150.37 0.0011319 132190000 6506 5140.3 4752.7 5265.1 5868.2 5155.4 4786.3 3890.26 6575.2 7238.8 TRUE FALSE FALSE 5743.376542 5298.66655 5009.645338 5479.833536 5435.314577 5057.069334 4970.909194 4333.111473 6304.167473 7195.743296 0.798163068 0.736361253 0.696195672 0.761538219 0.755351373 0.702786234 0.690812469 0.60217705 0.876096772 1 12.812928 -13.5228785 0.110990866 2.006163425 0.540090652 0.746108857 0.052875574 19.45870442 0.158401194 4.374112237 0.220865148 3.00E-14 13.5228785 -1.466072772 ADDTDSQSWR ddPTM_HeLa_CUDC101_4h_R1 2 ADDTDSQSWR 10 0 O75369-8 O75369-8 FLNB Filamin-B 0 0 ; ; 185.6 1.68E-10 67952000 4339.6 4967.1 4716.9 3861.2 4253.9 4260.8 4375.9 4345 4399.8 4043.5 FALSE FALSE TRUE 3830.918666 5120.130464 4971.909882 4018.676426 3940.098272 4179.532339 4544.679929 4839.617237 4218.438382 4019.449082 0.953095459 1.273838867 1.236963022 0.999807771 0.980258287 1.039827164 1.130672347 1.204049893 1.04950661 1 11.97278206 -7.341241479 25 0.977850494 1.114766216 0.243613001 0.095719717 97.69452992 30604.44299 0.017110894 0.019567048 4.56E-08 7.341241479 0.136915722 TETDS(ph)VGTPQSNGGMR ddPTM_HeLa_CUDC101_4h_R1 1 TETDSVGTPQSNGGMR 16 0 Q9H0H5;F8VRD2;H0YIK5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 TET(0.001)DS(0.941)VGT(0.057)PQSNGGMR 176.29 3.15E-07 10557000 1613.1 1443.1 1550.6 1446.8 1430.5 1431.7 1182.5 1274.8 1366.8 1672.6 TRUE FALSE FALSE 1424.014863 1487.560201 1634.430126 1505.806758 1324.974865 1404.392708 1228.109421 1419.918079 1310.459925 1662.651301 0.856472348 0.894691629 0.983026402 0.905666003 0.796904838 0.844670622 0.738645211 0.854008341 0.788174841 1 10.69926992 -13.52287846 0.040150453 1.713655434 0.428630224 0 0.081363791 396.3928215 1.270310471 35.43039362 11.46453323 3.00E-14 13.52287846 -1.28502521 ADEDPIMGFHQMFLLK ddPTM_HeLa_CUDC101_4h_R1 2 ADEDPIMGFHQMFLLK 16 0 P61970;H3BRV9 P61970 NUTF2 Nuclear transport factor 2 0 0 ; ; 98.253 0.00041757 0 3559.1 2901.2 2670.05 3025.2 3619.1 3385.6 2907.8 2888.3 2401.8 2730.1 FALSE FALSE TRUE 3141.907693 2990.582533 2814.400979 3148.580732 3352.126203 3321.025321 3019.95482 3217.092397 2302.796787 2713.861244 1.157725989 1.101965895 1.037046749 1.160184862 1.235187028 1.223727016 1.112788956 1.185429949 0.848531513 1 11.40613124 -6.111243933 5.241739512 1.076518909 1.187538401 0.391930569 0.087117335 0.184523137 7.384012924 0.01022066 0.017195289 7.74E-07 6.111243933 0.111019492 ADEEEMLDNLPEAGDSR ddPTM_HeLa_CUDC101_4h_R1 3 ADEEEMLDNLPEAGDSR 17 0 Q9NPD8 Q9NPD8 UBE2T Ubiquitin-conjugating enzyme E2 T 0 0 ;; ;; 255.39 1.82E-56 44147800 4947.65 3986.94 3935.98 3622.35 4616.86 4029.54 4113.9 4240.44 4890.84 4500 FALSE FALSE TRUE 4367.693967 4109.772896 4148.770984 3770.08509 4276.283436 3952.683238 4272.574501 4723.154549 4689.237505 4473.2338 0.976406368 0.918747617 0.927465715 0.842809757 0.955971368 0.883629923 0.955142229 1.055870263 1.048288043 1 12.12710245 -7.418309166 3.141020052 0.990385086 0.930157305 0.256060665 0.055291339 0.291740506 5.293248715 0.009263702 0.01040257 3.82E-08 7.418309166 -0.06022778 VSPSKS(ph)PSLS(ph)PSPPSPLEK ddPTM_HeLa_CUDC101_4h_R1 1 VSPSKSPSLSPSPPSPLEK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VS(0.007)PS(0.046)KS(0.88)PS(0.106)LS(0.593)PS(0.364)PPS(0.004)PLEK 105.65 0.00052965 53437000 4099.5 3065.7 3977.5 3451.6 3564.4 3400.5 2802.4 2932.7 3647.3 4302.2 TRUE FALSE FALSE 3618.962824 3160.150583 4192.535681 3592.371167 3301.461313 3335.641128 2910.489507 3266.546714 3496.95675 4276.610323 0.846222253 0.738938165 0.980340822 0.840004325 0.77198086 0.779973127 0.680559903 0.763816777 0.817693567 1 12.06225204 -13.52287843 0.039867168 2.065136223 0.174071812 0.211291637 0.085295379 309.0445158 0.983587596 40.50413924 13.20939964 3.00E-14 13.52287843 -1.891064411 ADEGISFR ddPTM_HeLa_CUDC101_4h_R1 2 ADEGISFR 8 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 ; ; 139.97 0.025277 63742000 10120 8959 8500.9 8793.4 9254.2 9015.7 8671.3 8595.2 9333.4 9447.9 FALSE FALSE TRUE 8933.748941 9235.016171 8960.484368 9152.03286 8571.536103 8843.740544 9005.754946 9573.642825 8948.673302 9391.703471 0.951238396 0.983316413 0.954085102 0.974480603 0.912671075 0.941654575 0.958905376 1.019372349 0.952827496 1 13.19717114 -9.398363192 0.821919952 1.003544826 0.959502985 0 0.030180372 0.904200607 0.944672121 0.027093818 0.005051448 4.00E-10 9.398363192 -0.044041841 DAS(ph)SPVPPPHVPPPVPPLRPR ddPTM_HeLa_CUDC101_4h_R1 1 DASSPVPPPHVPPPVPPLRPR 21 1 O94875-12;O94875-11;O94875-9;O94875-4;O94875-10;O94875-5;O94875-3;H7BXR3;O94875-8;H7BZX1;O94875-2;O94875-7;O94875;H7C1R7;H7BZK1;O94875-6 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 DAS(0.537)S(0.463)PVPPPHVPPPVPPLRPR 56.488 0.011055 12829000 1035.9 1005.6 938.76 1068.4 992 726.08 932.69 580.96 890.81 1218.8 TRUE FALSE FALSE 914.4733723 1036.581344 989.5122052 1111.97397 918.8221363 712.2312337 968.6641657 647.0941381 854.0904348 1211.550523 0.754795904 0.855582433 0.816732102 0.917810647 0.758385324 0.587867547 0.799524367 0.53410413 0.704956515 1 10.24263885 -13.5228784 0.039008955 2.239167892 5.24E-12 0.145788492 0.123465971 401.5307449 1.251148116 61.63443353 20.5837744 3.00E-14 13.5228784 -2.239167892 SGTLKS(ph)PPKGFDTTAINK ddPTM_HeLa_CUDC101_4h_R1 1 SGTLKSPPKGFDTTAINK 18 2 B1ALK7;A0A2R8YG42;Q14155-6;Q14155-1;Q14155-5;Q14155-2;Q14155-3;Q14155;E7EUY6;E7EU80 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 1 0 S(0.022)GT(0.022)LKS(0.946)PPKGFDT(0.008)T(0.002)AINK 68.845 0.016818 48967000 2513.7 2314.9 2340.9 2574.7 2411.9 2125.2 1845.8 1738 2822.1 2822.3 TRUE FALSE FALSE 2219.047897 2386.219325 2467.456135 2679.707395 2233.978942 2084.665351 1916.993124 1935.846895 2705.771844 2805.512834 0.790959809 0.850546573 0.879502708 0.955157774 0.796281847 0.743060351 0.683295083 0.690015341 0.964448214 1 11.4540488 -13.52287834 0.031999517 2.184639576 6.75E-16 0.662312474 0.062740201 577.6523817 1.482757038 79.02011102 32.06705385 3.00E-14 13.52287834 -2.184639576 ADEHVIDQGDDGDNFYVIER ddPTM_HeLa_CUDC101_4h_R1 4 ADEHVIDQGDDGDNFYVIER 20 0 P13861;P13861-2;H7C1L0 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 0 0 ;;; ;;; 224.99 8.87E-34 74921000 12707 11459.1 10737.9 11505.7 11234.6 12041.4 11430.7 11569.6 11882.8 12776.6 FALSE FALSE TRUE 11217.50472 11812.14129 11318.42335 11974.95218 10405.84594 11811.73036 11871.58593 12886.6365 11392.98595 12700.60421 0.883226068 0.930045617 0.891172039 0.942864763 0.819318968 0.930013262 0.934726075 1.014647514 0.897042831 1 13.63260951 -9.431233266 1.123243897 1.000708332 0.913250351 0 0.056745518 0.483761753 1.077483817 0.033467922 0.008121698 3.70E-10 9.431233266 -0.087457981 DT(ph)HSPDAPAASGTSESEALISHLDK ddPTM_HeLa_CUDC101_4h_R1 1 DTHSPDAPAASGTSESEALISHLDK 25 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 DT(0.597)HS(0.401)PDAPAAS(0.002)GT(0.001)SESEALISHLDK 99.093 7.63E-06 6879800 1471.3 1121.8 1090.4 1274.2 1260.2 1359.8 1179.8 924.48 1540.4 1390.5 TRUE FALSE FALSE 1298.836444 1156.361328 1149.350322 1326.167384 1167.237557 1333.864081 1225.305281 1029.719066 1476.90406 1382.229244 0.939667895 0.836591566 0.831519321 0.959440982 0.84446018 0.965009304 0.886470378 0.744969816 1.068494294 1 10.43278119 -13.52287826 0.04007512 1.665025849 0.501113973 0.497372243 0.064647309 462.7730532 1.480329808 37.42917159 12.13655107 3.00E-14 13.52287826 -1.163911876 ADEVAPAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 ADEVAPAKK 9 1 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 1 ; ADEVAPAK(1)K;ADEVAPAK(1)K 132.76 0.0025929 31393000 13568.3 13958.3 15184.6 15855.6 15753.5 14421.4 13318.2 12782.3 12069.6 12161.9 FALSE TRUE FALSE 11977.84444 14388.33868 16005.52541 16502.2599 14591.39569 14146.33582 13831.88744 14237.38536 11572.08598 12089.56048 0.990759297 1.190145722 1.323912928 1.365000815 1.206941784 1.170128215 1.144118304 1.177659468 0.957196583 1 13.56147418 -7.210101932 4.380793756 0.995216221 1.231023861 0.741959704 0.065742025 0.087765893 3.632632127 0.012104537 0.014716539 6.16E-08 7.210101932 0.23580764 ADFCIIHYAGK ddPTM_HeLa_CUDC101_4h_R1 3 ADFCIIHYAGK 11 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 0 ;; ;; 98.04 0.0079246 21920900 12542.5 9730.1 9454.9 10541.1 10543.3 10603 9999.3 9337.8 9936.1 3827.75 FALSE FALSE TRUE 11072.28716 10029.87285 9966.060494 10971.01162 9765.541764 10400.76544 10384.97635 10400.77741 9526.529752 3804.982373 2.909944404 2.635984051 2.619213315 2.883327844 2.566514325 2.73345956 2.729309977 2.733462705 2.503698787 1 11.89367405 -9.268096605 0.766758635 0.873137002 2.739398575 0.190830217 0.472048717 0.103895482 0.097937123 0.122472169 0.025808554 5.39E-10 9.268096605 1.866261573 SSS(ph)PTQYGLTK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPTQYGLTK 11 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 S(0.001)S(0.022)S(0.948)PT(0.029)QYGLTK 135.02 0.0016807 207850000 3785.2 3312.6 3152.9 3277.5 3377.1 3059.8 3521.9 3395.6 3500.7 3019.2 TRUE FALSE FALSE 3341.504594 3414.65728 3323.355311 3411.170617 3127.978061 3001.439413 3657.740863 3782.141379 3356.399664 3001.241664 1.113374052 1.137748193 1.107326794 1.136586453 1.042227988 1.000065889 1.218742531 1.260192214 1.118337022 1 11.55134378 -13.52287824 0.021614347 1.05E-08 1.891790564 0.150671252 0.074075633 1974.475381 3.439730498 203.7946121 110.6326551 3.00E-14 13.52287824 1.891790554 ADGATSDDLDLHDDR ddPTM_HeLa_CUDC101_4h_R1 1 ADGATSDDLDLHDDR 15 0 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2 G3V1L9 TJP1 Tight junction protein ZO-1 0 0 88.108 0.012003 18362000 3514.1 2654.6 4204.8 4413.6 4319.8 3913.7 3500.9 2624.8 4039.6 4519.1 FALSE FALSE TRUE 3102.182525 2736.38508 4432.124207 4593.605685 4001.13696 3839.052693 3635.930886 2923.596622 3873.085978 4492.220192 0.69056778 0.60913868 0.986622208 1.022569128 0.890681398 0.854600293 0.809383942 0.650813294 0.862176343 1 12.13321293 -9.587228885 1.41232486 0.998808742 0.805689259 0.072548754 0.134827366 0.54148422 1.956146691 0.097081881 0.023194271 2.59E-10 9.587228885 -0.193119483 S(ph)LSPQEDALTGSR ddPTM_HeLa_CUDC101_4h_R1 4 SLSPQEDALTGSR 13 0 Q96EN8 Q96EN8 MOCOS Molybdenum cofactor sulfurase 1 0 S(0.99)LS(0.009)PQEDALT(0.001)GSR;S(0.861)LS(0.139)PQEDALTGSR;S(0.958)LS(0.042)PQEDALTGSR;S(0.5)LS(0.5)PQEDALTGSR ;;; 217.79 6.12E-25 92535000 5203.91 4551.87 4289.39 4811.06 4544.13 4310.39 4080.64 3899.72 4523.88 5143.19 TRUE FALSE FALSE 4593.915558 4692.107719 4521.287398 5007.275822 4208.918583 4228.176492 4238.031652 4343.648362 4337.403752 5112.598077 0.898548153 0.917754075 0.884342428 0.979399465 0.823244566 0.827011322 0.828938944 0.849597073 0.848375657 1 12.3198409 -13.52287824 0.031848601 1.790177624 0.352658138 0.039692003 0.059043164 444.476588 1.135626921 39.92988663 16.27228666 3.00E-14 13.52287824 -1.437519486 IWDPTPSHT(ph)PAGAATPGR ddPTM_HeLa_CUDC101_4h_R1 1 IWDPTPSHTPAGAATPGR 18 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 IWDPT(0.012)PS(0.185)HT(0.558)PAGAAT(0.245)PGR 66.289 0.036543 14046000 4667.6 3310.7 4060.6 3819.3 4058.9 4152.6 3743.7 3777.3 4257.6 3844.9 TRUE FALSE FALSE 4120.471004 3412.698743 4280.128319 3975.067562 3759.483033 4073.396074 3888.095763 4207.292564 4082.099926 3822.030364 1.078084319 0.892902049 1.119857225 1.040040812 0.983635051 1.065767586 1.01728542 1.100800403 1.068044871 1 11.90012352 -13.52287776 0.004129038 5.35E-05 2.011524293 0.011878621 0.06270572 215901.8768 72.18278919 18638.47973 16582.39878 3.00E-14 13.52287776 2.011470818 ADGYEPPVQESV ddPTM_HeLa_CUDC101_4h_R1 1 ADGYEPPVQESV 12 0 H0Y9Y4;P61247;D6R9B6;D6RAT0 H0Y9Y4 RPS3A 40S ribosomal protein S3a 0 0 138.66 0.0071497 9256100 1288.3 1457.9 1361.6 1155.6 1399.5 1603.6 1554.2 1421.9 1460 1268.5 FALSE FALSE TRUE 1137.287427 1502.816171 1435.212215 1202.730363 1296.261673 1573.014002 1614.146015 1583.763348 1399.818182 1260.954906 0.901925534 1.191808021 1.138194719 0.95382504 1.028000024 1.247478395 1.280098128 1.256003162 1.11012549 1 10.30030097 -4.876760123 0.46721715 0.961946845 1.43024455 0.348649221 0.103083833 1.56214972 0.329830949 0.024692734 0.363184602 1.33E-05 4.876760123 0.468297704 ADGYNQPDSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 ADGYNQPDSKR 11 1 O60506-2;O60506;O43390;B4DT28;O43390-4;O43390-3;O43390-2 O60506-2;O43390 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R 0 1 ADGYNQPDSK(1)R 163.84 0.00023123 456750 137.55 166.64 124.4 230.17 121.02 138 58.998 272.87 254.38 181.51 FALSE TRUE FALSE 121.4265975 171.7739809 131.1254403 239.5573275 112.0925957 135.3678799 61.27357262 303.9324178 243.8943487 180.4303704 0.672983141 0.952023656 0.726737078 1.327699582 0.621251264 0.750249969 0.339596779 1.684485916 1.351736673 1 7.495298386 -4.238377552 24.34071132 0.827405559 1.684487284 0.403120161 0.298483877 2857.653389 3016059.52 0.033765681 2.459150313 5.78E-05 4.238377552 0.857081725 ADHDFVVQEDFMK ddPTM_HeLa_CUDC101_4h_R1 1 ADHDFVVQEDFMK 13 0 A0A087X2I1;P62333 A0A087X2I1 PSMC6 26S protease regulatory subunit 10B 0 0 106.17 0.0052512 8096000 5704.8 5254.4 4647.7 5095.5 5273.1 5523.4 4991.2 4851.9 5763.7 4851.4 FALSE FALSE TRUE 5036.091992 5416.281836 4898.968721 5303.316515 4884.113918 5418.050348 5183.712256 5404.220684 5526.117846 4822.543657 1.044281265 1.123117222 1.015847459 1.099692795 1.012767176 1.12348394 1.074891722 1.120616228 1.145892757 1 12.23557858 ADHGEPIGR ddPTM_HeLa_CUDC101_4h_R1 4 ADHGEPIGR 9 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;; ;;; 120.31 0.0052007 150228000 19639.5 9791.2 24291.4 24189.6 16656.2 13860.2 18869.5 10197.3 23455.7 27821.5 FALSE FALSE TRUE 17337.38758 10092.85527 25604.66656 25176.15644 15427.50531 13595.83978 19597.30294 11358.11941 22488.84612 27656.01648 0.626893884 0.364942481 0.925826269 0.910331987 0.557835411 0.491605137 0.708609027 0.410692531 0.813162884 1 14.75530575 -13.52287875 0.225475734 3.0662161 0.579740696 0.230972443 0.187970509 38.09161147 0.48713609 34.65422247 0.139130977 3.00E-14 13.52287875 -2.486475404 ADIDISGPNVDVDVPDVNIEGPDAK ddPTM_HeLa_CUDC101_4h_R1 1 ADIDISGPNVDVDVPDVNIEGPDAK 25 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 129.08 1.17E-09 0 3695.1 3630.9 3082.9 3178.5 3547.1 3447.8 3414.8 3451.7 3528.6 3391.2 FALSE FALSE TRUE 3261.965979 3742.763725 3249.570899 3308.132969 3285.4375 3382.038959 3546.50998 3844.627576 3383.149614 3371.028992 0.967646967 1.110273372 0.963970024 0.981342189 0.974609684 1.003266056 1.052055615 1.140490807 1.003595526 1 11.71897332 -4.360124801 1.804027251 0.991475686 1.171794508 0.527506349 0.040126941 0.383600064 1.457674721 0.005646393 0.109284311 4.36E-05 4.360124801 0.180318822 TTIPEEEEEEEEAAGVVVEEELFHQQGT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR 30 0 P20700 P20700 LMNB1 Lamin-B1 1 0 TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR ;;; 154.83 2.33E-16 218729600 7879.2 7275.5 6415.2 6203.9 6710.7 6874.8 6458.7 5170.94 7511.3 7935.6 TRUE FALSE FALSE 6955.61212 7499.649531 6762.025117 6456.921858 6215.665031 6743.674644 6707.814223 5759.578908 7201.681035 7888.398698 0.8817521 0.950718874 0.857211378 0.818533913 0.787950162 0.854885117 0.850339147 0.730132835 0.912945873 1 12.94551676 -13.52287772 0.030271288 2.065249403 0.126461006 0.601053904 0.046762177 395.307777 0.96078233 46.91675266 19.98034947 3.00E-14 13.52287772 -1.938788398 ADIDVSGPSVDTDAPDLDIEGPEGK ddPTM_HeLa_CUDC101_4h_R1 1 ADIDVSGPSVDTDAPDLDIEGPEGK 25 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 147.26 1.03E-10 8299300 7623.6 7454.7 6044.1 6035.8 7186.3 8030.6 6445.7 8217.7 7719.5 7712.2 FALSE FALSE TRUE 6729.973165 7684.370471 6370.862328 6281.966013 6656.180966 7877.429685 6694.312808 9153.169751 7401.298943 7666.327491 0.877861424 1.002353536 0.831018807 0.819423123 0.868235928 1.027536287 0.873209867 1.193944527 0.965429529 1 12.90431991 -4.254220247 24.53657968 0.926923432 1.193944691 0.564980929 0.072198354 416.7875006 1416542.09 0.010700721 0.143863821 5.57E-05 4.254220247 0.267021259 SDEK(ac)AAVAGK ddPTM_HeLa_CUDC101_4h_R1 1 SDEKAAVAGK 10 1 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 1 SDEK(1)AAVAGK 93.096 0.017035 1234000 526.63 575.12 1056.4 769.1 1154.8 1269.7 829.64 917.22 436.87 271.75 FALSE TRUE FALSE 464.8992297 592.8387655 1113.512179 800.4672223 1069.612705 1245.482588 861.6394927 1021.632617 418.8620337 270.1336189 1.720997303 2.194613051 4.122079228 2.96322696 3.959569005 4.610616749 3.189678857 3.781952877 1.55057351 1 8.077529388 -7.041771976 1.226023168 1.251564577 3.821792615 0.815039929 0.503858081 0.115485358 0.33808087 0.096243658 0.126252507 9.08E-08 7.041771976 2.570228038 up ADILEDK(ac)DGK ddPTM_HeLa_CUDC101_4h_R1 2 ADILEDKDGK 10 1 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2T0;M0QYQ7;M0R0N3;M0R019 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 1 ; ADILEDK(1)DGK;ADILEDK(1)DGK 179.42 0.00022838 7516900 8010.9 4612.2 5124.4 4685.2 7119.4 6789.8 7532.1 6999.6 6697 5516 FALSE TRUE FALSE 7071.874446 4754.296415 5401.440564 4876.282707 6594.216046 6660.295878 7822.61562 7796.406171 6420.946825 5483.190587 1.289737122 0.867067511 0.985090793 0.88931483 1.2026239 1.214675247 1.42665397 1.421874007 1.171023827 1 12.4207999 -4.963053496 1.897133132 1.090865468 1.439024887 0.553891967 0.129336369 0.274885551 1.869360057 0.023133095 0.103267168 1.09E-05 4.963053496 0.348159419 ADINTK(ac)WAATR ddPTM_HeLa_CUDC101_4h_R1 1 ADINTKWAATR 11 1 P50914;E7EPB3 P50914 RPL14 60S ribosomal protein L14 0 1 ADINTK(1)WAATR 121.29 0.0019743 2727500 744.38 1418 1506.9 1437.7 2240.6 2228.3 1833.2 1016.5 2200.8 2462 FALSE TRUE FALSE 657.1249048 1461.686899 1588.367572 1496.33562 2075.315402 2185.79889 1903.907138 1132.214251 2110.082092 2447.355915 0.268504021 0.597251463 0.649013722 0.611409077 0.84798267 0.893126691 0.777944526 0.462627542 0.862188487 1 11.25700821 -9.696111833 1.592092113 0.999153015 0.59250319 0.258689515 0.181632414 0.376370081 1.725790092 0.158085422 0.035289347 2.01E-10 9.696111833 -0.406649825 GVSNESVPDS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 1 GVSNESVPDSPAR 13 0 Q86XJ1;G3V1N3 Q86XJ1 GAS2L3 GAS2-like protein 3 1 0 GVSNESVPDS(1)PAR 157.37 8.06E-05 12845000 1440.2 1804.2 1402 1289.1 1923.3 1339.2 1193.4 1000.3 1344.9 1766.4 TRUE FALSE FALSE 1271.381939 1859.785263 1477.796361 1341.67507 1781.421991 1313.656991 1239.429838 1114.170109 1289.462653 1755.893374 0.724065571 1.059167539 0.841620785 0.764098259 1.014538819 0.748141664 0.705868509 0.634531757 0.73436273 1 10.77798953 -13.52287752 0.027411288 2.087146577 9.69E-09 0.086812269 0.135175382 1639.45432 3.613261756 201.7138066 93.05859942 3.00E-14 13.52287752 -2.087146567 ADK(ac)PDMGEIASFDK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 1 ADKPDMGEIASFDKAK 16 2 P63313 P63313 TMSB10 Thymosin beta-10 0 2 ADK(1)PDMGEIASFDK(1)AK 87.363 0.024533 2485800 406.06 490.25 630.23 525.57 768.17 847.7 470.68 952.37 454.31 406.08 FALSE TRUE FALSE 358.4622623 505.3540214 664.3021401 547.0050163 711.5036295 831.5315349 488.8342853 1060.783951 435.5831495 403.6646181 0.88802002 1.251915572 1.645678393 1.355097751 1.762610835 2.059956453 1.210991163 2.627884396 1.079071908 1 8.657013327 -6.271293069 0.651778406 0.927799357 1.988276331 0.551331238 0.344308164 0.375783256 0.309769151 0.070358818 0.182214822 5.35E-07 6.271293069 1.060476974 PEPSK(ac)SAPAPK ddPTM_HeLa_CUDC101_4h_R1 3 PEPSKSAPAPK 11 1 U3KQK0;Q99877 U3KQK0 HIST1H2BN Histone H2B;Histone H2B type 1-N 0 1 ;; PEPSK(1)SAPAPK;PEPSK(1)SAPAPK;PEPSK(1)SAPAPK 120.63 0.002048 826580300 3974.4 9387.4 11993.19 17386.3 14690.27 14387.24 15739.62 12744.86 1724.7 1706.36 FALSE TRUE FALSE 3508.526857 9676.614667 12641.57813 18095.38846 13606.59805 14112.82737 16346.70242 14195.68335 1653.607136 1696.210495 2.068450153 5.704843058 7.452835699 10.6681267 8.021762683 8.32020991 9.637189762 8.369057608 0.974883212 1 10.7280995 -7.041020672 1.601442762 1.385149832 8.958888243 0.945889149 0.797436549 0.051925022 0.259583703 0.142956733 0.185250296 9.10E-08 7.041020672 7.573738411 up ADLDVSGPK ddPTM_HeLa_CUDC101_4h_R1 1 ADLDVSGPK 9 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 120.12 0.031399 7364500 3502.8 3039.7 2694.4 2495.6 2543.7 3091.4 2618.3 2448.4 2758.8 2774.1 FALSE FALSE TRUE 3092.207094 3133.349554 2840.067414 2597.381355 2356.056319 3032.436696 2719.288708 2727.115959 2645.081096 2757.59953 1.121340159 1.136259823 1.029905678 0.941899404 0.854386684 1.099665366 0.986107184 0.988945614 0.959196964 1 11.42919724 -6.515622353 24.24144037 1.065692092 0.976248844 0.202590624 0.074332683 253.3727983 846443.5846 0.011845775 0.01716534 3.05E-07 6.515622353 -0.089443247 ADLINNLGTIAK ddPTM_HeLa_CUDC101_4h_R1 2 ADLINNLGTIAK 12 0 P07900;P07900-2;Q14568;P08238;Q58FF8 P07900;P08238;Q58FF8 HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 0 0 ; ; 168.3 5.48E-07 314560 230.45 290.677 224.81 217.32 301.85 240.45 194.83 187.9 432.56 408.43 FALSE FALSE TRUE 203.4370003 299.6324138 236.9639086 226.1832489 279.5831269 235.8638169 202.3446584 209.2897765 414.7296937 406.0006402 0.501075565 0.738009708 0.583654027 0.55710072 0.688627305 0.580944446 0.498385072 0.515491247 1.021500098 1 8.665338192 -9.381595003 0.81180058 1.036484076 0.579544905 0.837931875 0.075034359 0.258383053 0.264160771 0.079397413 0.015002616 4.15E-10 9.381595003 -0.456939171 SNVSSPATPTASS(ph)SSSTTPTRK ddPTM_HeLa_CUDC101_4h_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVSSPATPT(0.01)AS(0.136)S(0.234)S(0.234)S(0.096)S(0.096)T(0.096)T(0.096)PT(0.003)RK 71.265 0.0016663 65302000 2087.1 1891.8 1844.8 1848.4 2253.1 1827.5 1607.4 1615.8 2004.5 2102.2 TRUE FALSE FALSE 1842.453302 1950.084116 1944.535468 1923.785741 2086.893302 1792.643482 1669.397956 1799.736141 1921.873662 2089.696021 0.88168484 0.933190328 0.930535087 0.920605544 0.998658791 0.857848924 0.798871195 0.861243034 0.91969054 1 11.02907738 -13.52287734 0.015715556 2.071733256 2.64E-06 0.289420627 0.050135879 3415.836054 4.334931337 356.4030994 228.4648399 3.00E-14 13.52287734 -2.071730612 QHLENDPGS(ph)NEDTDIPK ddPTM_HeLa_CUDC101_4h_R1 2 QHLENDPGSNEDTDIPK 17 0 O43396;K7ER96;K7EML9 O43396 TXNL1 Thioredoxin-like protein 1 1 0 QHLENDPGS(0.975)NEDT(0.025)DIPK;QHLENDPGS(0.991)NEDT(0.009)DIPK ; 106.73 0.00088523 17123700 7489.4 6617.2 6695.6 6563.6 6201.5 6623.3 6715.8 5415.9 7170.5 7813.9 TRUE FALSE FALSE 6611.503885 6821.068089 7057.584389 6831.291978 5744.0277 6496.971588 6974.830656 6032.424164 6874.928955 7767.422575 0.851183751 0.878163641 0.90861342 0.879479893 0.739502408 0.836438539 0.89795947 0.776631387 0.885097841 1 12.92322024 -13.52287716 0.184391616 1.685466228 0.811089937 0.231803362 0.059808727 26.90819253 0.313058403 6.600751952 0.061765839 3.00E-14 13.52287716 -0.874376291 S(ph)WVIGSPEILR ddPTM_HeLa_CUDC101_4h_R1 1 SWVIGSPEILR 11 0 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 S(0.997)WVIGS(0.003)PEILR 117.14 0.0049438 51030000 2945.5 3148.6 2565.7 2576.6 2748.3 2822 2450.5 2462.1 2967.5 3342.3 TRUE FALSE FALSE 2600.232955 3245.604634 2704.409503 2681.684885 2545.563384 2768.175052 2545.016606 2742.375512 2845.178394 3322.419851 0.78263226 0.976879738 0.813987884 0.807148104 0.766177515 0.833180385 0.766012942 0.825415099 0.85635727 1 11.69801868 -13.52287647 0.264687369 2.293216377 0.798765096 0.134685231 0.07250752 23.39233705 0.313044289 15.88645644 0.030072804 3.00E-14 13.52287647 -1.494451281 RSAS(ph)ASHQADIK ddPTM_HeLa_CUDC101_4h_R1 1 RSASASHQADIK 12 1 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 RS(0.222)AS(0.748)AS(0.03)HQADIK 66.436 0.034319 2439500 1864.8 740.24 1674.1 1755.9 1271.8 1107.4 1629.1 614.36 1925 2131.4 TRUE FALSE FALSE 1646.210971 763.045917 1764.60691 1827.513192 1177.981848 1086.27819 1691.934933 684.2962591 1845.650685 2118.722338 0.776982874 0.360144368 0.832863693 0.862554361 0.555986892 0.512704365 0.798563786 0.322975902 0.871114941 1 11.04897882 -13.52287614 0.07908205 2.363521788 0.219779565 0.338362738 0.180302339 123.2337681 0.748890803 29.16985478 3.30862883 3.00E-14 13.52287614 -2.143742223 TIQEVLEEQS(ph)EDEDREAKR ddPTM_HeLa_CUDC101_4h_R1 3 TIQEVLEEQSEDEDREAKR 19 2 M0R0Q7;P18858-2;P18858;P18858-3 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 0 TIQEVLEEQS(1)EDEDREAKR;TIQEVLEEQS(1)EDEDREAKR;TIQEVLEEQS(1)EDEDREAKR ;; 81.477 0.0023982 173077000 10452 8913.4 8913.2 8255.12 10152.5 9653.1 8414.9 9003 9459.91 8318.6 TRUE FALSE FALSE 9226.832404 9188.011289 9395.074553 8591.799475 9403.570302 9468.983201 8739.465512 10027.86513 9069.968506 8269.120597 1.115817855 1.111123146 1.136163688 1.039022152 1.137191094 1.145101597 1.056879678 1.212688219 1.096848014 1 13.01351819 -13.52287573 0.215472403 0.381107308 1.13493039 0.099102392 0.054629594 27.72741246 0.348237941 7.197070016 0.035298853 3.00E-14 13.52287573 0.753823082 EIVEK(ac)SK ddPTM_HeLa_CUDC101_4h_R1 2 EIVEKSK 7 1 Q14686;F6M2K2;A0A0D9SFT8 Q14686 NCOA6 Nuclear receptor coactivator 6 0 1 ; EIVEK(1)SK;EIVEK(1)SK 124.98 0.0024788 9210600 5377.6 7761.1 9356.2 10932.5 11434.8 9913.4 10498.9 12168 3209.2 3642.1 FALSE TRUE FALSE 4747.24588 8000.210292 9862.024473 11378.3746 10591.27759 9724.318412 10903.84609 13553.15594 3076.915418 3620.436627 1.311235734 2.209736315 2.723987598 3.142818333 2.925414439 2.685951838 3.011748917 3.743514203 0.849874127 1 11.82194798 -7.033224979 1.351225604 1.10196196 3.08037102 0.916081923 0.271172897 0.075013304 0.266760721 0.050038434 0.065529055 9.26E-08 7.033224979 1.97840906 up ADQLYK(ac)QK ddPTM_HeLa_CUDC101_4h_R1 1 ADQLYKQK 8 1 P08559-3;P08559;P08559-2;P08559-4;P29803;Q5JPU2;Q5JPU0;Q5JPT9;Q5JPU1 P08559-3 PDHA1;PDHA2 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial" 0 1 ADQLYK(1)QK 96.331 0.019329 5280700 4853.6 4363.4 3673 4509.3 5076.2 5123.3 5091.6 4729.6 3901 3703.1 FALSE TRUE FALSE 4284.668366 4497.831182 3871.57349 4693.208745 4701.738839 5025.581588 5287.984718 5267.998546 3740.199129 3681.073797 1.163972417 1.221880199 1.051751121 1.274956441 1.277273725 1.365248801 1.436533199 1.431103759 1.01606198 1 11.84591096 -1 0.144287123 0.945100702 2.856561472 0.869073485 0.056071972 17.65210085 0.166753962 0.141716319 7.031510029 0.1 1 1.91146077 ADRDESSPYAAMLAAQDVAQR ddPTM_HeLa_CUDC101_4h_R1 4 ADRDESSPYAAMLAAQDVAQR 21 1 P62263;A0A2R8Y811;E5RH77 P62263 RPS14 40S ribosomal protein S14 0 0 ;;; ;;; 169.62 2.47E-09 119404000 8647.67 7780.53 8139.82 7564.08 8359.33 8908.09 7593.47 8105.02 8062.81 10274.97 FALSE FALSE TRUE 7634.003232 8020.238907 8579.883291 7872.575877 7742.67888 8738.183025 7886.352682 9027.662715 7730.457559 10213.85402 0.74741652 0.785231401 0.840024076 0.77077427 0.758056544 0.855522608 0.772123105 0.883864474 0.75686 1 13.31823972 -9.354010175 1.002746426 1.003699721 0.797133329 0 0.085613029 0.211271802 0.369348156 0.031968664 0.007760495 4.43E-10 9.354010175 -0.206566391 T(ph)LSDESLCSGR ddPTM_HeLa_CUDC101_4h_R1 1 TLSDESLCSGR 11 0 O60292;M0R2Q7 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 0 T(0.636)LS(0.362)DES(0.002)LCSGR 147.58 0.0042406 52924000 3863.7 3895.5 3567.6 3298.7 3588.4 3696.5 3777.8 3518 4428.9 3206 TRUE FALSE FALSE 3410.802943 4015.515738 3760.475247 3433.235244 3323.690881 3625.995421 3923.511011 3918.4749 4246.338867 3186.930569 1.070247019 1.259994735 1.179967736 1.077285862 1.042912862 1.137770448 1.23112535 1.229545111 1.332422773 1 11.63795187 -13.52287433 0.032049093 3.16E-09 1.792728977 0 0.126806736 695.046701 1.786809859 78.07307363 31.63898011 3.00E-14 13.52287433 1.792728974 TAS(ph)EPNLK ddPTM_HeLa_CUDC101_4h_R1 1 TASEPNLK 8 0 P56524-2;P56524;Q9UKV0-10;Q9UKV0-3;Q9UKV0-4;Q9UKV0-2;Q9UKV0;Q9UKV0-5;Q9UKV0-7;Q9UQL6-2;Q9UQL6;Q9UQL6-3 P56524-2;Q9UQL6-2 HDAC4;HDAC9;HDAC5 Histone deacetylase 4;Histone deacetylase 9;Histone deacetylase 5 1 0 T(0.006)AS(0.994)EPNLK 83.862 0.037431 60355000 3163.7 2359.3 2699.8 2888.8 3061.4 2645.3 2554.7 2976.3 3012.1 2505.6 TRUE FALSE FALSE 2792.855882 2431.987237 2845.759354 3006.61775 2835.566621 2594.84531 2653.235635 3315.109961 2887.939963 2490.69658 1.121315179 0.976428545 1.142555612 1.20713931 1.138463289 1.041815101 1.065258473 1.330997115 1.159490878 1 11.28233357 -13.52287403 0.022474775 4.78E-06 1.884350277 0.077303164 0.095391472 2059.75898 3.729925957 214.224317 113.5144229 3.00E-14 13.52287403 1.884345494 RSS(ph)PPPPPSGSSSR ddPTM_HeLa_CUDC101_4h_R1 1 RSSPPPPPSGSSSR 14 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 RS(0.12)S(0.88)PPPPPSGSSSR 110.56 0.0018341 50590000 358.02 263.56 202.02 252.19 285.58 194.32 296.8 318.04 244.81 244 TRUE FALSE FALSE 316.0534383 271.6799712 212.9418123 262.4753983 264.5133324 190.6136698 308.2476754 354.244388 234.7188282 242.5486771 1.303051586 1.120104939 0.877934338 1.082155555 1.09055772 0.785878002 1.270869332 1.460508432 0.967718443 1 7.922130501 -13.52287355 0.008455048 1.28E-06 2.119791763 0.035703233 0.190545463 84274.50647 57.62619908 8139.515423 6406.220921 3.00E-14 13.52287355 2.119790479 SKPVLEPLT(ph)PPLGS(ph)PRPR ddPTM_HeLa_CUDC101_4h_R1 2 SKPVLEPLTPPLGSPRPR 18 2 H7BXC7;Q9H7P9-3;Q9H7P9;E7ESZ3;Q9H7P9-2 H7BXC7 PLEKHG2 Pleckstrin homology domain-containing family G member 2 2 0 SKPVLEPLT(1)PPLGS(1)PRPR;SKPVLEPLT(1)PPLGS(1)PRPR ; 92.428 0.005421 69108000 4668.8 4510.1 3960.3 3980.4 4698.6 3647.3 3327.4 3815.8 4590.5 6045.8 TRUE FALSE FALSE 4121.530341 4649.050835 4174.405797 4142.737917 4351.993639 3577.733829 3455.738933 4250.175248 4401.277647 6009.839313 0.685797095 0.773573234 0.694595243 0.689325904 0.724144759 0.595312727 0.575013532 0.70720281 0.732345312 1 12.5531107 -13.52287275 0.194443297 2.525236107 0.611278323 0.180715447 0.099514782 12.7852073 0.153029334 7.356249754 0.055628404 3.00E-14 13.52287275 -1.913957785 ASS(ph)LNVLNVGGK ddPTM_HeLa_CUDC101_4h_R1 2 ASSLNVLNVGGK 12 0 Q07866-6;Q07866-4;G3V5R9;Q07866-9;Q07866-7;H0YG16;H0YJK1 Q07866-6 KLC1 Kinesin light chain 1 1 0 AS(0.047)S(0.953)LNVLNVGGK;AS(0.014)S(0.986)LNVLNVGGK ; 206.45 2.88E-23 756820000 8841.1 7750 7513.3 7312.7 8257.4 7366.7 7586.4 8115.4 7988.7 7232 TRUE FALSE FALSE 7804.75966 7988.768314 7919.491724 7610.943514 7648.268053 7226.192471 7879.009989 9039.224332 7659.402405 7188.983742 1.085655489 1.111251409 1.101614916 1.05869533 1.063887237 1.005175798 1.095983837 1.257371648 1.065436045 1 12.81157213 -13.52287079 0.015621273 1.32E-05 1.922685471 0.217250547 0.059948728 4205.318509 5.304990909 406.684409 261.3921968 3.00E-14 13.52287079 1.922672231 ENQSEGKGSDS(ph)DSEGDNPEK ddPTM_HeLa_CUDC101_4h_R1 1 ENQSEGKGSDSDSEGDNPEK 20 1 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 1 0 ENQSEGKGS(0.011)DS(0.882)DS(0.106)EGDNPEK 95.365 0.00068897 71664000 6229.4 5641.1 6178.1 5541.2 6118.3 5252.2 5189.4 5271.4 5947 6951.3 TRUE FALSE FALSE 5499.199175 5814.895605 6512.106774 5767.194087 5666.965198 5152.023036 5389.556896 5871.474868 5701.862143 6909.953358 0.79583738 0.841524581 0.942424129 0.834621276 0.820116273 0.745594473 0.779970083 0.849712663 0.825166517 1 12.75446026 -13.52286899 0.264349883 2.254714603 0.805503584 0 0.074974763 22.75549373 0.304451788 14.96016991 0.028497575 3.00E-14 13.52286899 -1.449211019 ADSEQPSK(ac)RPR ddPTM_HeLa_CUDC101_4h_R1 1 ADSEQPSKRPR 11 2 Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3;A0A2R8Y7R5;A0A2R8Y755;A0A2R8Y586;A0A2R8YF51;A0A2R8Y5D2;A0A2R8YCS7 Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 0 1 ADSEQPSK(1)RPR 107.06 0.009519 2150300 1466.5 1738.9 2011.3 2573 2366.1 1894.9 1948.5 2221.9 750.7 641.85 FALSE TRUE FALSE 1294.599093 1792.473448 2120.036962 2677.938061 2191.557517 1858.75794 2023.654298 2474.832115 719.7558283 638.0322477 2.029049625 2.809377511 3.322773997 4.197182934 3.434869515 2.913266448 3.171711626 3.878851146 1.128086912 1 9.317485533 -7.470486535 0.875673247 1.246220984 3.512863217 0.8674737 0.374305212 0.138584908 0.218757693 0.105091917 0.110980536 3.38E-08 7.470486535 2.266642234 S(ph)PSHSGNAGDLK ddPTM_HeLa_CUDC101_4h_R1 3 SPSHSGNAGDLK 12 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 S(0.866)PS(0.131)HS(0.003)GNAGDLK;S(0.999)PSHSGNAGDLK;S(0.823)PS(0.167)HS(0.01)GNAGDLK ;; 141.65 0.0011971 120099700 5972.5 3730.92 6370.31 6021.87 5155.99 4580.16 5431.58 3277.64 5657.7 6301.04 TRUE FALSE FALSE 5272.412604 3845.865223 6714.708228 6267.467887 4775.64289 4492.801079 5641.07786 3650.753289 5424.487211 6263.561134 0.841759582 0.614006176 1.072027252 1.000623727 0.762448516 0.717291806 0.900618313 0.582855856 0.866038839 1 12.61276742 -13.52286431 0.029050636 2.180723157 1.28E-09 0.143175166 0.145677461 1415.532141 3.303722085 185.9557325 81.94162029 3.00E-14 13.52286431 -2.180723156 AATSEEPTGFSVDSNLLGSLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 AATSEEPTGFSVDSNLLGSLSPK 23 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 AATSEEPTGFSVDS(0.001)NLLGS(0.186)LS(0.813)PK 130.57 8.48E-08 7058400 2113.8 2126.6 1695.7 1333.8 2260.3 1747.2 1784.9 1950.7 1976.9 1733.9 TRUE FALSE FALSE 1866.023568 2192.118025 1787.374671 1388.198129 2093.562172 1713.875071 1853.744191 2172.759803 1895.411345 1723.586686 1.082639814 1.271835089 1.037008864 0.805412423 1.214654412 0.994365462 1.075515497 1.260603729 1.099690176 1 10.75119814 -13.52286266 0.01345963 2.38E-07 1.942763016 0.012162999 0.132889563 13986.37036 15.21054449 1326.803376 906.4671278 3.00E-14 13.52286266 1.942762778 IESFGS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 IESFGSPK 8 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 IES(0.015)FGS(0.985)PK 92.239 0.026376 24267000 5731.7 4687.9 5029.6 4947.6 4954.9 4976.9 4964.3 4222.1 5102.8 5523 TRUE FALSE FALSE 5059.838815 4832.328642 5301.51539 5149.384513 4589.386899 4881.973925 5155.774714 4702.726798 4892.460424 5490.14895 0.92162141 0.880181701 0.965641449 0.937931659 0.835931218 0.889224312 0.939095598 0.856575448 0.89113437 1 12.42262958 -13.52285902 0.143528006 1.364800718 0.866993476 0 0.050105045 40.84721334 0.40499857 4.17250739 0.096915326 3.00E-14 13.52285902 -0.497807241 ADSLLAVVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 ADSLLAVVKR 10 1 Q15424-2;Q15424;Q15424-4;Q15424-3;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 1 ; ADSLLAVVK(1)R;ADSLLAVVK(1)R 164.68 0.00084462 24802100 1601.37 963.13 835.87 1131.6 1143.95 1182.6 1221.96 964.57 1129.22 899.35 FALSE TRUE FALSE 1413.659836 992.8028937 881.0596606 1177.751539 1059.563088 1160.043875 1269.091407 1074.37275 1082.673074 894.0006262 1.581273877 1.110517 0.985524657 1.317394535 1.18519278 1.297587319 1.419564337 1.201758386 1.211042858 1 9.804132032 -9.73076648 1.657776778 1.000133831 1.310735058 0.013383193 0.172509804 0.41176586 2.046399607 0.137009824 0.029886783 1.86E-10 9.73076648 0.310601227 ADSVANK(ac)LGSFGK ddPTM_HeLa_CUDC101_4h_R1 1 ADSVANKLGSFGK 13 1 Q6GQQ9-2;Q6GQQ9 Q6GQQ9-2 OTUD7B OTU domain-containing protein 7B 0 1 ADSVANK(1)LGSFGK 170.66 8.76E-07 299510 0 139.34 162.72 218.11 156.11 393.55 280.33 410.95 0 132.58 FALSE TRUE FALSE 0 143.6329002 171.5171354 227.0054686 144.5940763 386.0436894 291.142422 457.7308869 0 131.7914083 0 1.089850258 1.301428808 1.7224603 1.097143419 2.929202249 2.209115342 3.473146641 0 1 7.042112511 -5.28235308 0.616713845 0.550599237 3.524755516 0.778790046 0.506670771 0.510445612 0.259524862 0.108135242 0.855223225 5.22E-06 5.28235308 2.974156279 SGSMEEDVDTSPGGDYYTSPSS(ph)PTSSSR ddPTM_HeLa_CUDC101_4h_R1 2 SGSMEEDVDTSPGGDYYTSPSSPTSSSR 28 0 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 0 SGSMEEDVDTSPGGDYYTSPS(0.227)S(0.725)PT(0.033)S(0.011)S(0.004)SR;SGSMEEDVDTSPGGDYYTSPS(0.073)S(0.703)PT(0.155)S(0.051)S(0.017)S(0.001)R ; 141.13 2.77E-15 15528900 3194 2651.3 2641.8 2458.6 2679.9 2769.8 2242.53 2059.39 3064 3741.9 TRUE FALSE FALSE 2819.604162 2732.98341 2784.623699 2558.872335 2482.209116 2716.97068 2329.025133 2293.822633 2937.700623 3719.643012 0.758030852 0.734743469 0.748626599 0.687934925 0.667324554 0.730438558 0.626142112 0.616678167 0.789780259 1 11.86094845 -13.52285638 0.130195814 2.115216565 0.552196441 0.505117858 0.072631782 10.57818911 0.09763977 3.025826124 0.096048105 3.00E-14 13.52285638 -1.563020124 (ac)MQNDRT(ph)TISRALSQNR ddPTM_HeLa_CUDC101_4h_R1 1 MQNDRTTISRALSQNR 16 2 A0A1W2PQY5 A0A1W2PQY5 1 0 MQNDRT(0.493)T(0.493)IS(0.014)RALSQNR 72.152 0.018335 3963200 2036.7 1936.8 1610.6 1630.4 1973.1 1924.5 1424.5 1609.6 1831.4 2225.8 TRUE FALSE FALSE 1797.961113 1996.470512 1697.673908 1696.894759 1827.548344 1887.793369 1479.443442 1792.830358 1755.908917 2212.560843 0.812615445 0.90233474 0.767289141 0.766936993 0.825987837 0.853216478 0.668656614 0.810296523 0.793609325 1 11.11150141 -13.52285575 0.170471992 1.845414584 0.743194333 0 0.08552117 23.93438927 0.265990837 6.693214163 0.084693711 3.00E-14 13.52285575 -1.102220251 NSADYSSESK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 NSADYSSESKK 11 1 Q04727-4;Q04727;Q04727-3;H7C4W5;H7C4P7;Q5JSY7;H7C4E4;Q04727-2 Q04727-4 TLE4 Transducin-like enhancer protein 4 0 1 ; NSADYSSESK(1)K;NSADYSSESK(1)K 155.99 9.81E-13 925170 584.44 885.31 982.85 1347.17 1246.03 1019.38 1219.52 1074.16 527.74 522.26 FALSE TRUE FALSE 515.9328292 912.5853517 1035.985844 1402.113416 1154.112849 999.9370249 1266.557295 1196.438032 505.9863338 519.1535743 0.993796161 1.757833129 1.995528674 2.700768106 2.223066365 1.926090996 2.439658239 2.304593653 0.974637099 1 9.020017565 -7.012221059 1.932508056 0.989077011 2.292620172 0.89378562 0.197469108 0.06659268 0.491062635 0.034193954 0.044580404 9.72E-08 7.012221059 1.303543161 up SHIAS(ph)PSPCPDR ddPTM_HeLa_CUDC101_4h_R1 3 SHIASPSPCPDR 12 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 S(0.042)HIAS(0.87)PS(0.088)PCPDR;S(0.001)HIAS(0.976)PS(0.023)PCPDR;S(0.01)HIAS(0.989)PS(0.002)PCPDR ;; 133.32 0.0014588 26178200 3606.04 2588.31 2874.3 3108.57 3733.72 2889.73 2593.41 2266.13 3710.04 3671.12 TRUE FALSE FALSE 3183.345458 2668.052763 3029.693352 3235.350921 3458.290914 2834.613215 2693.438692 2524.097079 3557.110581 3649.284015 0.872320555 0.731116776 0.830215829 0.886571423 0.947662857 0.776758729 0.73807319 0.691669124 0.97474205 1 11.83339772 -13.52284783 0.030785108 2.221359993 1.11E-05 0.569409945 0.067769494 610.2225424 1.507901873 83.54026876 35.07028114 3.00E-14 13.52284783 -2.221348912 SYDS(ph)SMESR ddPTM_HeLa_CUDC101_4h_R1 2 SYDSSMESR 9 0 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 S(0.42)YDS(0.501)S(0.073)MES(0.006)R;S(0.239)YDS(0.38)S(0.38)MESR ; 114.86 0.0078142 121034000 3117.8 2070.4 2435.4 2545.7 2613 2449.6 2604.8 1376.95 2798.5 3257.1 TRUE FALSE FALSE 2752.33621 2134.18657 2567.065091 2649.524649 2420.244196 2402.877961 2705.268009 1533.696422 2683.144646 3237.726624 0.850082953 0.659162066 0.792860358 0.818328709 0.747513449 0.742149737 0.83554553 0.473695466 0.828712537 1 11.66076546 -13.5228444 0.041967794 2.337821361 1.21E-05 0.325642017 0.107399596 292.9519038 0.980081758 48.74825197 15.00151339 3.00E-14 13.5228444 -2.337809271 NSSNTSVGS(ph)PSNTIGR ddPTM_HeLa_CUDC101_4h_R1 4 NSSNTSVGSPSNTIGR 16 0 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 NSSNT(0.001)SVGS(0.886)PS(0.104)NT(0.009)IGR;NSSNT(0.001)S(0.008)VGS(0.798)PS(0.008)NT(0.184)IGR;NSS(0.001)NT(0.023)S(0.072)VGS(0.704)PS(0.198)NT(0.002)IGR;NSS(0.002)NT(0.008)S(0.003)VGS(0.987)PSNTIGR ;;; 205.98 2.32E-23 831321000 13956.2 11793.5 12317.8 12759.1 13716.3 12214.3 11614.5 8984.3 13629.8 14377.5 TRUE FALSE FALSE 12320.27539 12156.84376 12983.73753 13279.47125 12704.47588 11981.33258 12062.47516 10007.0364 13067.97388 14291.98199 0.862041066 0.850605869 0.908463048 0.92915533 0.888923306 0.838325474 0.844002964 0.700185349 0.914357007 1 13.80291838 -13.52284247 0.022815093 2.130274567 7.15E-07 0.502872193 0.052303856 1087.186612 1.998289231 128.4150563 67.39763041 3.00E-14 13.52284247 -2.130273853 SQT(ph)T(ph)TERDSDTDVEEEELPVENR ddPTM_HeLa_CUDC101_4h_R1 1 SQTTTERDSDTDVEEEELPVENR 23 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 0 S(0.178)QT(0.481)T(0.413)T(0.36)ERDS(0.384)DT(0.184)DVEEEELPVENR 66.845 0.006158 34115000 1499.1 1497.4 1748.2 1539.9 1608.9 1499.7 1371.8 717.42 1474.9 1872.4 TRUE FALSE FALSE 1323.37777 1543.533119 1842.71298 1602.703778 1490.214652 1471.095721 1424.710786 799.0881929 1414.103998 1861.262882 0.711010671 0.829293451 0.990033701 0.861084049 0.800647059 0.790375038 0.765453822 0.429325809 0.759755117 1 10.86206612 -13.52283456 0.033432345 2.141862593 6.00E-43 0.211655475 0.134223719 926.8600574 2.483691568 126.6509887 49.38405043 3.00E-14 13.52283456 -2.141862593 AGNSDS(ph)EEDDANGRVELILEPK ddPTM_HeLa_CUDC101_4h_R1 2 AGNSDSEEDDANGRVELILEPK 22 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 0 AGNS(0.12)DS(0.88)EEDDANGRVELILEPK;AGNS(0.331)DS(0.669)EEDDANGRVELILEPK ; 84.113 0.00043263 24366000 5725.1 5205.5 4579.2 5088.3 5792 4754.9 4629.6 3997.19 5611.3 5755.2 TRUE FALSE FALSE 5054.012457 5365.875285 4826.765403 5295.822868 5364.735699 4664.208205 4808.165223 4452.213952 5379.999839 5720.967814 0.883419138 0.937931388 0.843697353 0.925686534 0.937732194 0.81528307 0.840446124 0.778227408 0.940400298 1 12.48204351 -13.52281728 0.020958445 2.128243669 2.40E-06 0.575941247 0.042804694 1118.317188 1.889564804 128.7116643 71.17448974 3.00E-14 13.52281728 -2.128241273 EQQSWVIS(ph)PPQPSPQK ddPTM_HeLa_CUDC101_4h_R1 2 EQQSWVISPPQPSPQK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 EQQSWVIS(0.999)PPQPS(0.001)PQK;EQQSWVIS(0.985)PPQPS(0.015)PQK ; 203.59 7.03E-33 9179100 5374.4 5178.3 5059.4 4954.9 4968.9 4806.9 4502.4 3862.2 5662.7 5617.1 TRUE FALSE FALSE 4744.420979 5337.837285 5332.926468 5156.982239 4602.354146 4715.216391 4676.059076 4301.857236 5429.281109 5583.689239 0.849692878 0.955969621 0.955090128 0.923579737 0.824249694 0.844462539 0.837449735 0.770432782 0.972346575 1 12.44700294 -13.52281252 0.020389795 2.101842888 3.06E-06 0.626839503 0.044708672 1591.507573 2.616662978 179.5179777 100.870819 3.00E-14 13.52281252 -2.10183983 QPGVDSLS(ph)PVASLPK ddPTM_HeLa_CUDC101_4h_R1 2 QPGVDSLSPVASLPK 15 0 Q9UBW7;A0A087X151;Q9UBW7-2 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 1 0 QPGVDS(0.077)LS(0.923)PVASLPK;QPGVDS(0.089)LS(0.91)PVASLPK ; 153.75 0.00014289 21740000 6953.9 6183.4 5941.4 6064 6235.1 6338 5409.8 4425.7 5988.2 7309.1 TRUE FALSE FALSE 6138.774383 6373.903225 6262.610056 6311.316131 5775.149095 6217.11321 5618.457798 4929.503799 5741.363861 7265.625148 0.844906565 0.877268383 0.861950614 0.868654245 0.794859214 0.855688682 0.773293101 0.678469326 0.790209204 1 12.82687122 -13.52280904 0.029072958 2.18895071 3.81E-06 0.171588216 0.072426765 410.6475074 0.959148267 54.16563458 23.85343596 3.00E-14 13.52280904 -2.188946903 MQAGQISVQSSEPS(ph)SPEPGKVNIPAK ddPTM_HeLa_CUDC101_4h_R1 2 MQAGQISVQSSEPSSPEPGKVNIPAK 26 1 P37275-3;P37275-4;P37275-5;P37275;P37275-2 P37275-3 ZEB1 Zinc finger E-box-binding homeobox 1 1 0 MQAGQIS(0.006)VQS(0.016)S(0.016)EPS(0.482)S(0.482)PEPGKVNIPAK;MQAGQISVQS(0.002)S(0.007)EPS(0.495)S(0.495)PEPGKVNIPAK ; 103.94 5.00E-07 9688200 5655.9 5477.6 5072.6 4819.1 4692 4686.1 4412.5 3838 5227 6146.9 TRUE FALSE FALSE 4992.923976 5646.358363 5346.8401 5015.643728 4345.880508 4596.72045 4582.691603 4274.902406 5011.540848 6110.337965 0.817127302 0.924066458 0.875048177 0.82084555 0.711234065 0.752285794 0.749989874 0.699617997 0.820174085 1 12.57703646 -13.52280318 0.034134358 2.231382962 9.88E-06 0.444770719 0.067470892 305.6004213 0.835775178 43.90261282 16.78729271 3.00E-14 13.52280318 -2.231373087 RNETSFLPAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 RNETSFLPAKK 11 2 F8WAJ0;Q9H8H2-3;Q9H8H2-4;Q9H8H2-2;Q9H8H2 F8WAJ0 DDX31 Probable ATP-dependent RNA helicase DDX31 0 1 RNETSFLPAK(1)K 111.94 0.0069214 3246300 2007.5 2100.2 3168.7 3814.4 3120 3320 3335.5 3251.2 1058.8 1149.3 FALSE TRUE FALSE 1772.183893 2164.904673 3340.009507 3969.967719 2889.843816 3256.676531 3464.151352 3621.303466 1015.155816 1142.463912 1.551194636 1.894943594 2.923514231 3.474917392 2.529483675 2.85057278 3.032175734 3.169731163 0.888567074 1 10.15793288 -7.012198248 1.569014302 1.223414166 3.014144586 0.898757003 0.281276303 0.084360887 0.406954857 0.054152094 0.071072615 9.72E-08 7.012198248 1.79073042 up AEAAASALADADADLEER ddPTM_HeLa_CUDC101_4h_R1 2 AEAAASALADADADLEER 18 0 M0R1T5;O43633 M0R1T5 CHMP2A Charged multivesicular body protein 2a 0 0 ; ; 216 7.72E-24 23683000 4962.3 4593.6 4002.6 3814.5 4688.8 4544.1 4018.9 4578.3 4677.9 4456.9 FALSE FALSE TRUE 4380.626716 4735.123371 4218.992663 3970.071798 4342.916565 4457.428863 4173.910319 5099.475166 4485.074982 4430.390161 0.988767706 1.068782477 0.952284677 0.896099814 0.980256006 1.006103007 0.942108972 1.151021689 1.012343116 1 12.11321804 -4.251521092 24.81934745 0.987304159 1.151021787 0.565243886 0.0440673 714.1722911 1787092.875 0.005945979 0.106392919 5.60E-05 4.251521092 0.163717628 AEAAVVAVAEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 AEAAVVAVAEKR 12 1 A0A087WYP2;Q8IZQ5 A0A087WYP2 C11orf31;SELH Selenoprotein H 0 1 ; AEAAVVAVAEK(1)R;AEAAVVAVAEK(1)R 140.24 0.00029241 26232000 4189.2 3682.8 3810.9 4292.4 4701.1 4269.7 4341.2 4609.2 2938.1 3188.4 FALSE TRUE FALSE 3698.148326 3796.262703 4016.928781 4467.462625 4354.309219 4188.262586 4508.641538 5133.892697 2816.990274 3169.435255 1.166816177 1.197772599 1.267395753 1.409545318 1.373843877 1.321453902 1.422537826 1.619813085 0.888798807 1 11.63001008 -1 0.110561697 0.822335863 3.0619314 0.896795306 0.06524901 20.75442597 0.160629168 0.328140631 7.125741001 0.1 1 2.239595537 TTT(ph)PPDSGVLFEGLGISTRPR ddPTM_HeLa_CUDC101_4h_R1 1 TTTPPDSGVLFEGLGISTRPR 21 1 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 T(0.143)T(0.143)T(0.701)PPDS(0.014)GVLFEGLGISTRPR 166.36 7.24E-08 37292000 1095.7 1100.3 888.82 971.7 885.51 1054.9 930.79 643.01 867.7 1172.1 TRUE FALSE FALSE 967.263707 1134.198939 936.8722977 1011.330126 820.1876915 1034.77954 966.6908821 716.2076593 831.9330387 1165.128297 0.830177852 0.973454118 0.804093678 0.867998939 0.703946247 0.888124975 0.829686211 0.614702828 0.71402698 1 10.18627311 -13.52280188 0.029812999 2.18980511 1.94E-06 0 0.116012732 713.5150317 1.708343091 95.07327311 41.01096774 3.00E-14 13.52280188 -2.189803169 CSATPSAQVKPIVSAS(ph)PPSR ddPTM_HeLa_CUDC101_4h_R1 1 CSATPSAQVKPIVSASPPSR 20 1 Q96EV2;H0Y3K4 Q96EV2 RBM33 RNA-binding protein 33 1 0 CSATPSAQVKPIVS(0.063)AS(0.71)PPS(0.227)R 79.589 0.0022582 70573000 3407.3 2676.9 2619.9 2894.6 3110.7 2904.4 2631.2 3053 3443.8 2724.8 TRUE FALSE FALSE 3007.901459 2759.372116 2761.539719 3012.6543 2881.229858 2849.003409 2732.686265 3400.541179 3301.845106 2708.592768 1.110503393 1.018747502 1.019547771 1.11225812 1.06373682 1.051838963 1.008895208 1.255464173 1.219026036 1 11.40332779 -13.52278523 0.010896283 0.00015186 1.973757417 0 0.089573317 13190.51322 11.61915741 1227.000374 901.2704673 3.00E-14 13.52278523 1.973605557 AEAEAGSPRPDPR ddPTM_HeLa_CUDC101_4h_R1 3 AEAEAGSPRPDPR 13 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 ;; ;; 88.021 0.025632 38252000 15447 14327.4 15985 14625.2 15451.5 14442.8 13309.7 14395.2 14200.9 14921.7 FALSE FALSE TRUE 13636.32608 14768.81021 16849.19745 15221.67887 14311.67363 14167.32765 13823.05959 16033.89138 13615.53289 14832.94506 0.919326945 0.995676189 1.135930685 1.026207459 0.964857186 0.955125741 0.931916051 1.080964792 0.917925121 1 13.85651745 -7.012481299 24.94217282 0.961672661 1.012279953 0.194104321 0.06111543 982.4081929 1963208.292 0.010750718 0.013538979 9.72E-08 7.012481299 0.050607291 RGS(ph)IGENQVEVMVEEK ddPTM_HeLa_CUDC101_4h_R1 2 RGSIGENQVEVMVEEK 16 1 Q05682 Q05682 CALD1 Caldesmon 1 0 RGS(1)IGENQVEVMVEEK;RGS(1)IGENQVEVMVEEK ; 170.11 3.99E-07 63368000 13513.7 11085 10690.2 10492.6 12637 11176.2 11338.4 12065.2 11380.4 10603.4 TRUE FALSE FALSE 11929.64457 11426.51571 11268.14455 10920.53358 11704.79369 10963.03261 11775.72589 13438.6536 10911.2951 10540.33051 1.131809346 1.084075656 1.069050401 1.036071267 1.110476913 1.040103306 1.117206513 1.274974593 1.035194778 1 13.36363248 -13.52277446 0.016093047 1.99E-06 1.944383567 0.364376052 0.058639887 4084.909897 5.307988016 402.0818202 255.0148005 3.00E-14 13.52277446 1.944381572 KWPQGAVPQLPPSAPATS(ph)EMTTTPERPR ddPTM_HeLa_CUDC101_4h_R1 1 KWPQGAVPQLPPSAPATSEMTTTPERPR 28 2 P27708;F8VPD4;H7BZB3 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 KWPQGAVPQLPPS(0.04)APAT(0.052)S(0.227)EMT(0.227)T(0.227)T(0.227)PERPR 59.912 0.0021707 29495000 1873.3 1500 1721.6 1445 1727.4 1705.9 1462.7 1689.7 1295.8 1554.8 TRUE FALSE FALSE 1653.714614 1546.213222 1814.674904 1503.933346 1599.973143 1673.3628 1519.116829 1882.048618 1242.386576 1545.55198 1.069983174 1.000427835 1.174127384 0.973071993 1.035211474 1.082695905 0.98289598 1.217719392 0.803846516 1 10.59390646 -13.52271543 0.009879826 2.61E-06 1.958860813 0.183386231 0.098426539 18227.10865 14.56133495 1659.38218 1254.435759 3.00E-14 13.52271543 1.958858208 QEPLGS(ph)DSEGVNCLAYDEAIMAQQDR ddPTM_HeLa_CUDC101_4h_R1 2 QEPLGSDSEGVNCLAYDEAIMAQQDR 26 0 J3KR44;F5H6Q1;F5GYJ8;Q96FW1;F5H3F0 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 1 0 QEPLGS(0.826)DS(0.174)EGVNCLAYDEAIMAQQDR;QEPLGS(0.963)DS(0.037)EGVNCLAYDEAIMAQQDR ; 152.06 3.42E-11 13208200 2476.5 2507.6 1866.43 2126.4 2276.48 2167.29 2183.53 2175.12 2924 2108.52 TRUE FALSE FALSE 2186.208424 2584.856184 1967.334851 2213.123783 2108.548606 2125.952554 2267.749484 2422.726869 2803.471482 2095.978429 1.043049105 1.233245604 0.938623616 1.055890534 1.005997283 1.014300779 1.081952682 1.155893035 1.337547869 1 11.03340815 -13.52270636 0.013897584 0.255712871 1.688827722 0 0.130107659 10155.37181 11.40266913 714.9570401 482.4546585 3.00E-14 13.52270636 1.433114851 TEEARPSPAPGPGT(ph)PTGT(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 TEEARPSPAPGPGTPTGTPTR 21 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 2 0 T(0.194)EEARPS(0.034)PAPGPGT(0.723)PT(0.199)GT(0.712)PT(0.137)R 57.477 0.03668 57358000 2077.6 1634.9 1873.4 1833.5 2119.3 1494.2 2211.2 990.43 1849 2133.6 TRUE FALSE FALSE 1834.066877 1685.269331 1974.681671 1908.278055 1962.963461 1465.700625 2296.486725 1103.176548 1772.783437 2120.909252 0.864754999 0.794597567 0.931054296 0.899745264 0.925529208 0.691071824 1.082784057 0.520143211 0.835860108 1 11.05046718 -13.52269799 0.024171555 2.144457958 6.83E-06 0.073703399 0.145574343 2153.302316 4.190979973 260.7318752 131.7290872 3.00E-14 13.52269799 -2.144451133 SRS(ph)PLLVTVVESDPRPQGQPR ddPTM_HeLa_CUDC101_4h_R1 2 SRSPLLVTVVESDPRPQGQPR 21 2 A0A2R8YH03;Q5VWN6;Q5VWN6-2 A0A2R8YH03 FAM208B Protein FAM208B 1 0 S(0.207)RS(0.659)PLLVT(0.047)VVES(0.087)DPRPQGQPR;S(0.275)RS(0.716)PLLVT(0.009)VVES(0.001)DPRPQGQPR ; 66.777 0.006465 65530000 2490.5 1572.11 1517.06 1512.15 1851.87 1905.17 1961.11 1738.01 1626.49 1682.88 TRUE FALSE FALSE 2198.567365 1620.544846 1599.076852 1573.822013 1715.26124 1868.832056 2036.75067 1935.858033 1559.445394 1672.870155 1.314248664 0.968721237 0.955888207 0.940791494 1.025340332 1.117141131 1.217518684 1.157207586 0.93219751 1 10.70810976 -13.52248761 0.003541939 0.562151578 1.631652103 0 0.132626373 1705915.981 489.5207202 77697.7703 70290.3212 3.00E-14 13.52248761 1.069500526 QAQQERDELADEIANSS(ph)GK ddPTM_HeLa_CUDC101_4h_R1 1 QAQQERDELADEIANSSGK 19 1 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 QAQQERDELADEIANS(0.217)S(0.783)GK 128.04 2.48E-05 18719000 1269.5 1102.4 1026.4 768.81 1103.2 1183.9 1110.9 978.89 1154.5 1015.3 TRUE FALSE FALSE 1120.691134 1136.363637 1081.890289 800.1653949 1021.819134 1161.31908 1153.747785 1090.322881 1106.911021 1009.26095 1.110407704 1.125936396 1.071962893 0.792823099 1.01244295 1.150662848 1.143161027 1.080318108 1.096754037 1 9.979083525 -13.52247059 0.00930888 0.279753295 1.734637663 0 0.100632759 47441.8651 35.71528018 3182.674748 2445.198436 3.00E-14 13.52247059 1.454884367 VAQRS(ph)PVDSGTILR ddPTM_HeLa_CUDC101_4h_R1 2 VAQRSPVDSGTILR 14 1 P49454 P49454 CENPF Centromere protein F 1 0 VAQRS(0.952)PVDS(0.024)GT(0.024)ILR;VAQRS(1)PVDSGTILR ; 99.834 0.021941 47865000 2445 2139.12 2561.3 2287.75 2471.2 1977.93 2009.83 1232.59 2601.5 3072.7 TRUE FALSE FALSE 2158.400806 2205.023752 2699.771626 2381.054333 2288.904499 1940.204281 2087.349816 1372.903063 2494.265069 3054.423444 0.706647538 0.721911612 0.883889112 0.779542973 0.749373668 0.635211298 0.683385868 0.449480266 0.816607492 1 11.57668437 -13.5221436 0.046600409 2.287420385 3.61E-06 0.536934985 0.095215817 238.4488399 0.882858081 41.14944657 11.1488398 3.01E-14 13.5221436 -2.287416778 NSVLSDPGLDS(ph)PRT(ph)SPVIMAR ddPTM_HeLa_CUDC101_4h_R1 4 NSVLSDPGLDSPRTSPVIMAR 21 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 2 0 NSVLSDPGLDS(0.959)PRT(0.567)S(0.474)PVIMAR;NSVLS(0.013)DPGLDS(0.832)PRT(0.578)S(0.578)PVIMAR;NSVLSDPGLDS(0.979)PRT(0.564)S(0.457)PVIMAR;NSVLS(0.008)DPGLDS(0.948)PRT(0.522)S(0.522)PVIMAR ;;; 112.26 2.86E-05 109798000 6146.14 4858.06 4977.32 4896.93 5895.8 5348.94 5067.18 5206.7 5800.17 5000.73 TRUE FALSE FALSE 5425.698786 5007.73107 5246.408975 5096.647972 5460.87858 5246.917881 5262.62283 5799.409682 5561.084538 4970.985436 1.091473483 1.007392022 1.055406225 1.0252792 1.098550509 1.055508601 1.058667924 1.166651916 1.118708677 1 12.27931616 -13.5204752 0.010438506 3.67E-05 1.964871593 0.006251485 0.049152302 9222.448481 7.786339594 848.974471 631.7998387 3.02E-14 13.5204752 1.96483489 AEASIQAGAGDGEWEESEVK ddPTM_HeLa_CUDC101_4h_R1 1 AEASIQAGAGDGEWEESEVK 20 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 199.33 1.15E-16 5097400 1756.1 1551.9 1361.7 1482.6 1724.1 1627.4 1507.5 1640.1 1704.9 1594.5 FALSE FALSE TRUE 1550.25262 1599.7122 1435.317621 1543.066836 1596.916578 1596.360056 1565.64478 1826.802354 1634.6233 1585.015843 0.978067586 1.009272057 0.905554116 0.973534014 1.007508275 1.007157161 0.987778631 1.15254517 1.031297767 1 10.63028155 -4.261142324 7.431200945 0.986280462 1.154453639 0.698494621 0.032212806 0.038539961 19.61917618 0.003980509 0.032180139 5.48E-05 4.261142324 0.168173177 AEDELLDLQDK ddPTM_HeLa_CUDC101_4h_R1 1 AEDELLDLQDK 11 0 Q86V48-2;Q86V48-3;Q86V48;E5RFK8 Q86V48-2 LUZP1 Leucine zipper protein 1 0 0 170.89 4.61E-06 5443600 1923.1 1924 1710.5 1704.6 2208.3 1870.8 1512.3 1620.3 1670 1761.8 FALSE FALSE TRUE 1697.677133 1983.276159 1802.974804 1774.120956 2045.398109 1835.117607 1570.629918 1804.748403 1601.161893 1751.320735 0.96936963 1.132445999 1.029494351 1.013018872 1.167917485 1.047847816 0.89682597 1.030507072 0.914259656 1 10.77422761 TSPTTPEASATNSPCT(ph)SKPATPAPSEK ddPTM_HeLa_CUDC101_4h_R1 1 TSPTTPEASATNSPCTSKPATPAPSEK 27 1 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 TSPTTPEAS(0.01)AT(0.013)NS(0.029)PCT(0.72)S(0.192)KPAT(0.035)PAPS(0.001)EK 64.035 0.0022534 26488000 1788.8 1665.5 1613.5 1732.2 1640.4 1756.1 1644.3 1078.7 1712.2 1898.5 TRUE FALSE FALSE 1579.119576 1716.812081 1700.730691 1802.846603 1519.39096 1722.605318 1707.721202 1201.494848 1641.622391 1887.207638 0.83674925 0.909710223 0.901188961 0.955298488 0.805100048 0.912779963 0.904893117 0.636652175 0.869868455 1 10.88203745 -13.50689159 0.020490005 2.086566012 1.16E-06 0.215333662 0.083772916 2308.709437 3.824314669 259.3548482 145.5384688 3.11E-14 13.50689159 -2.086564853 SPQQTVPYVVPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SPQQTVPYVVPLSPK 15 0 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 0 SPQQT(0.001)VPY(0.003)VVPLS(0.996)PK;SPQQTVPYVVPLS(1)PK ; 136.39 0.00052939 72788000 15169.3 14098.3 13374.6 13065.5 13743.4 11580.1 10705.3 11823.7 14846.2 16016.6 TRUE FALSE FALSE 13391.17765 14532.65191 14097.67133 13598.36756 12729.57676 11359.22889 11118.20701 13169.66221 14234.23335 15921.33255 0.841083974 0.912778617 0.885458003 0.854097326 0.799529607 0.713459684 0.698321386 0.827170852 0.894035302 1 13.95867347 -13.50327146 0.031089068 2.211472941 1.76E-07 0.553567092 0.057439432 430.2632327 1.077044014 58.98582112 24.62162722 3.14E-14 13.50327146 -2.211472765 GADNDGSGS(ph)ESGYTT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 2 0 GADNDGS(0.033)GS(0.598)ES(0.012)GY(0.015)T(0.365)T(0.976)PK 110.77 0.0037307 30022000 5191.4 5086.4 5042.9 4878.9 5249.2 5054 4146.9 3859.6 6152.4 5554.8 TRUE FALSE FALSE 4582.871962 5243.105955 5315.534428 5077.88263 4861.976974 4957.603371 4306.847322 4298.961263 5898.795468 5521.759803 0.829965831 0.949535319 0.962652237 0.919613097 0.880512219 0.89783032 0.779977304 0.778549125 1.068281794 1 12.43091242 -13.44027049 0.018406536 2.061243191 1.22E-06 0.520793307 0.061559348 2652.263306 3.992850306 288.4997434 172.6221748 3.63E-14 13.44027049 -2.061241972 SQDADS(ph)PGSSGAPENLTFK ddPTM_HeLa_CUDC101_4h_R1 1 SQDADSPGSSGAPENLTFK 19 0 A8MQ02;J3KN01;P55196-3;P55196;P55196-5;H0Y8U8;H0Y948;H0Y8L4 A8MQ02 MLLT4 Afadin 1 0 SQDADS(0.999)PGS(0.001)SGAPENLTFK 164.99 7.06E-06 16171000 1183.9 1234.1 1193.5 1003.4 1134.4 1180.1 949.49 880.5 1166.3 1290.2 TRUE FALSE FALSE 1045.125037 1272.121158 1258.02422 1044.322989 1050.717572 1157.591559 986.1121474 980.7325609 1118.22462 1282.525833 0.814895895 0.991887357 0.980895813 0.814270529 0.819256459 0.902587323 0.768882873 0.764688348 0.871892473 1 10.32477217 -13.32765375 0.021800588 2.080468915 1.88E-07 0.285038067 0.073259691 1832.11346 3.325191777 213.2652755 117.4429497 4.70E-14 13.32765375 -2.080468727 ESLS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 2 ESLSPGK 7 0 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5 E7ETM8 NEXN Nexilin 1 0 ESLS(1)PGK;ES(0.001)LS(0.999)PGK ; 120.31 0.011899 106972000 14879.8 6757.4 12796.5 12100.5 8111.7 9561.5 10042.6 4572.1 14424.8 18720.4 TRUE FALSE FALSE 13135.6124 6965.587485 13488.3175 12594.01069 7513.316052 9379.130318 10429.94645 5092.569383 13830.20364 18609.05023 0.705872263 0.374311821 0.724825681 0.676768053 0.403745272 0.504009082 0.560477097 0.273660897 0.743197717 1 14.1837168 -13.31967638 0.080572238 2.705319441 8.63E-17 0.480126627 0.147731171 61.51928009 0.39576578 18.74214905 2.201042283 4.79E-14 13.31967638 -2.705319441 GELIPISPST(ph)EVGGSGIGTPPSVLKR ddPTM_HeLa_CUDC101_4h_R1 1 GELIPISPSTEVGGSGIGTPPSVLKR 26 1 P10244-2;P10244 P10244-2 MYBL2 Myb-related protein B 1 0 GELIPIS(0.395)PS(0.172)T(0.424)EVGGS(0.009)GIGT(0.001)PPSVLKR 61.903 0.00085401 0 1005.3 779.72 830.36 852.47 1165.2 892.23 931.75 847.92 941.81 712.17 TRUE FALSE FALSE 887.4602579 803.742249 875.2517733 887.2374113 1079.245517 875.2121993 967.6879096 944.4437854 902.9881932 707.9339812 1.253591834 1.135335032 1.236346604 1.25327705 1.52450023 1.236290703 1.366918294 1.334084548 1.275525991 1 9.467471017 -13.31290204 0.120468831 1.52E-09 1.464842818 0.147130059 0.120921762 36.70309754 0.335416534 8.957203945 0.401495469 4.87E-14 13.31290204 1.464842817 CSLHSAS(ph)PASVR ddPTM_HeLa_CUDC101_4h_R1 1 CSLHSASPASVR 12 0 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 CSLHS(0.08)AS(0.491)PAS(0.429)VR 80.387 0.022044 15339000 5748.7 4304.9 3908 3774.4 6188 5027.6 4790.8 4936.6 5095.3 3830.2 TRUE FALSE FALSE 5074.8461 4437.528866 4119.278301 3928.336346 5731.523568 4931.706907 4975.582761 5498.56259 4885.269577 3807.4178 1.332883956 1.165495645 1.081908663 1.031758675 1.505357139 1.295289134 1.306812917 1.444171057 1.283092593 1 11.89459717 -13.29007447 0.17866608 1.39E-30 1.347423702 0.059375404 0.156803869 45.81959284 0.564167063 16.34992276 0.207694858 5.13E-14 13.29007447 1.347423702 QTGIET(ph)PNK ddPTM_HeLa_CUDC101_4h_R1 2 QTGIETPNK 9 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 QTGIET(1)PNK;QTGIET(1)PNK ; 150.09 0.0034178 122744000 10121.1 8577.3 8244.5 7350.7 7093.5 7099.2 6678.8 5223 10287.2 12275.3 TRUE FALSE FALSE 8934.720001 8841.556446 8690.222608 7650.493318 6570.226637 6963.794588 6936.403553 5817.565208 9863.157262 12202.28597 0.7322169 0.724581973 0.712179884 0.626972138 0.538442277 0.570695901 0.568451155 0.476760274 0.808304058 1 13.57486383 -13.27849417 0.065032177 2.507704556 7.30E-16 0.792487029 0.066481364 27.04251981 0.143764908 6.449287514 1.139335513 5.27E-14 13.27849417 -2.507704556 ELPPPSEEIKTGEDEDEEDNDALLKENES(ph)PDVRR ddPTM_HeLa_CUDC101_4h_R1 1 ELPPPSEEIKTGEDEDEEDNDALLKENESPDVRR 34 3 A0A087WWS1;Q96FV9 A0A087WWS1 THOC1 THO complex subunit 1 1 0 ELPPPSEEIKT(0.001)GEDEDEEDNDALLKENES(0.999)PDVRR 47.104 0.014787 16810000 925.83 735.48 888.07 666.74 831.6 1093.4 870.11 681.23 757.37 654.6 TRUE FALSE FALSE 817.3056109 758.139267 936.0817505 693.9325391 770.2545248 1072.545217 903.6704342 758.7784696 726.150888 650.7064101 1.256028215 1.165101888 1.438562362 1.066429542 1.183720512 1.648278241 1.388752931 1.166084209 1.115942423 1 9.345862956 -13.13648933 0.145550207 2.50E-07 1.413894999 0.254379284 0.160567178 50.68850074 0.563591651 14.66891152 0.416514492 7.30E-14 13.13648933 1.413894748 QKS(ph)NS(ph)QSDSHDEEVSPTPPNPVVK ddPTM_HeLa_CUDC101_4h_R1 1 QKSNSQSDSHDEEVSPTPPNPVVK 24 1 C9J4C2;C9IZL8;C9JR00;C9JSK5;P31321 C9J4C2 PRKAR1B cAMP-dependent protein kinase type I-beta regulatory subunit 2 0 QKS(0.69)NS(0.69)QS(0.481)DS(0.138)HDEEVSPTPPNPVVK 54.66 0.017538 35287000 5037.2 3977.3 3984.3 3943.9 2925.8 3202.5 2581 2207.7 4063.5 7171.3 TRUE FALSE FALSE 4446.747052 4099.835899 4199.70331 4104.749289 2709.969563 3141.417648 2680.550035 2459.015644 3896.00081 7128.644789 0.623785752 0.575121362 0.589130674 0.575810608 0.380152139 0.440675295 0.376025193 0.344948545 0.546527555 1 12.79941212 -13.12947469 0.091016741 2.727634253 3.21E-12 0.316733323 0.148712042 14.50583769 0.108398401 4.975325175 0.486690578 7.42E-14 13.12947469 -2.727634253 SESADQTVS(ph)PPTPFAR ddPTM_HeLa_CUDC101_4h_R1 1 SESADQTVSPPTPFAR 16 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 SESADQT(0.104)VS(0.893)PPT(0.004)PFAR 183.75 1.03E-10 3092000 2778 2377 2437.9 2338 2555.2 2489.9 2180.8 1951.9 3057.9 2777 TRUE FALSE FALSE 2452.367051 2450.232553 2569.700248 2433.353746 2366.707987 2442.409306 2264.914187 2174.096406 2931.852068 2760.48228 0.888383551 0.887610317 0.930888152 0.881495876 0.85735308 0.884776303 0.820477712 0.787578468 1.062079655 1 11.43070463 -13.12513569 0.021712126 2.115355866 3.76E-07 0.811996202 0.033267605 605.3285756 1.132914436 73.34788888 41.31561833 7.50E-14 13.12513569 -2.11535549 AEDGENYDIK ddPTM_HeLa_CUDC101_4h_R1 1 AEDGENYDIK 10 0 E5RJD8;E5RHG6;O75347;A0A494C144;E5RIX8;E5RIW3;O75347-2 E5RJD8 TBCA Tubulin-specific chaperone A 0 0 115.23 0.035523 8128600 2262.9 1991.4 2146.5 2183.8 2096.5 2263.5 1884.3 1763.3 2226.2 2613.4 FALSE FALSE TRUE 1997.646292 2052.752674 2262.546283 2272.864803 1941.845372 2220.327509 1956.978082 1964.026944 2134.435094 2597.855381 0.768959776 0.790172035 0.870928497 0.874900435 0.747480166 0.854677102 0.753305244 0.756018583 0.821614286 1 11.3431054 -9.325455408 0.85006551 1.011343039 0.802070706 0.089961054 0.071619308 0.305074062 0.36034128 0.043129371 0.009257397 4.73E-10 9.325455408 -0.209272333 AEDGENYDIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AEDGENYDIKK 11 1 E5RJD8;E5RHG6;O75347;A0A494C144;E5RIX8;E5RIW3;O75347-2 E5RJD8 TBCA Tubulin-specific chaperone A 0 1 ; AEDGENYDIK(1)K;AEDGENYDIK(1)K 213.35 1.71E-13 8415600 5801.6 2625.5 2304.8 2433.9 5078.6 4317.9 5280.6 4236.8 5385.3 4306.8 FALSE TRUE FALSE 5121.545243 2706.388543 2429.40446 2533.164962 4703.961796 4235.543252 5484.274511 4719.100186 5163.315655 4281.182962 1.196292073 0.632159047 0.567461022 0.591697431 1.098752807 0.989339463 1.281018485 1.102288837 1.206048819 1 12.06379378 -7.30183717 24.99893014 1.092693475 0.896785166 0.175056057 0.233014685 866.7897505 536384.2191 0.044396568 0.050769735 4.99E-08 7.30183717 -0.19590831 GT(ph)VY(ph)LT(ph)PY(ph)RVIFLS(ph)KGK ddPTM_HeLa_CUDC101_4h_R1 1 GTVYLTPYRVIFLSKGK 17 2 K7EIJ0;K7ENL2;A6NG10;K7EMC9;Q969T9-2;Q969T9 K7EIJ0 WBP2 WW domain-binding protein 2 5 0 GT(1)VY(1)LT(1)PY(1)RVIFLS(1)KGK 44.807 0.0031941 0 243.79 181.38 193.61 168.25 220.51 173.43 247.27 213.37 356.89 160.24 TRUE FALSE FALSE 215.2133058 186.9681028 204.0771422 175.1119622 204.2434166 170.1221117 256.8072867 237.6591783 342.1788431 159.2868854 1.351104991 1.17378215 1.281192371 1.099349528 1.282236238 1.068023342 1.612231203 1.492019747 2.14819219 1 7.315483679 -13.1251102 0.17640696 7.83E-44 1.378202772 0 0.386821279 45.14379164 0.580823218 16.02703622 0.242287987 7.50E-14 13.1251102 1.378202772 AEDGSVIDYELIDQDAR ddPTM_HeLa_CUDC101_4h_R1 5 AEDGSVIDYELIDQDAR 17 0 P07355;P07355-2;H0YN42;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5;H0YNA0 P07355 ANXA2 Annexin A2;Annexin 0 0 ;;;; ;;;; 324.94 2.13E-166 868684200 20960.89 18277.29 17430.14 15394.57 18383.73 17612.05 16366.4 17339.32 18112.81 18592.45 FALSE FALSE TRUE 18503.88625 18840.39164 18372.46609 16022.42711 17027.59886 17276.12949 16997.65753 19313.1581 17366.19231 18481.86128 1.001191707 1.01939904 0.994080943 0.866927138 0.921314071 0.934761344 0.919694033 1.044979064 0.939634382 1 14.17382244 -6.487842988 24.57697635 1.002217334 0.934990208 0.233184242 0.046226613 377.7459577 264982.293 0.006065114 0.009261259 3.25E-07 6.487842988 -0.067227126 AEDK(ac)EWMPVTK ddPTM_HeLa_CUDC101_4h_R1 1 AEDKEWMPVTK 11 1 E9PQD7;P15880;E9PPT0;E9PMM9 E9PQD7 RPS2 40S ribosomal protein S2 0 1 AEDK(1)EWMPVTK 116.54 0.0030966 579540 406.34 342.21 419.57 139.96 268.28 349.27 292.03 343.87 351.5 69.287 FALSE TRUE FALSE 358.7094412 352.7530845 442.2532233 145.6681738 248.4895189 342.6082567 303.2936949 383.0147708 337.0110212 68.87487784 5.208131795 5.121650964 6.42111082 2.114968161 3.607839704 4.974357377 4.40354603 5.56102287 4.893090656 1 6.10590595 -5.291229538 5.369906137 3.423224077 4.92827588 0 1.596754227 0.348259569 29.61170716 0.292609988 0.687169587 5.11E-06 5.291229538 1.505051803 RQVSAS(ph)ELHTSGILGPETLR ddPTM_HeLa_CUDC101_4h_R1 1 RQVSASELHTSGILGPETLR 20 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 0 RQVS(0.15)AS(0.839)ELHT(0.008)S(0.003)GILGPETLR 79.586 0.0021446 71323000 852.6 632.85 422.56 494.65 1020.5 844.74 708.86 662.85 643.16 522.83 TRUE FALSE FALSE 752.6595205 652.3473584 445.4048718 514.8239651 945.2197481 828.6279919 736.2009677 738.3061647 616.6486726 519.7201839 1.448201443 1.255189578 0.857008994 0.990579125 1.818708946 1.594373314 1.416533339 1.420583975 1.186501298 1 9.021591279 -13.12430949 0.111128022 3.84E-19 1.597332269 0.191700656 0.25471282 120.5832319 1.07641046 29.35822494 1.798658788 7.51E-14 13.12430949 1.597332269 AEDNADTLALVFEAPNQEK ddPTM_HeLa_CUDC101_4h_R1 5 AEDNADTLALVFEAPNQEK 19 0 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 0 ;;;; ;;;; 227.63 6.68E-33 33664500 16384.4 14826 13454.22 13857.1 15905.9 15253.3 13882.8 12703.31 15213 15913.8 FALSE FALSE TRUE 14463.84547 15282.77149 14181.59583 14422.25243 14732.55345 14962.36872 14418.26425 14149.40346 14585.9137 15819.14401 0.914325419 0.966093455 0.896483136 0.911696134 0.931311671 0.945839339 0.911444022 0.89444811 0.922041906 1 13.94938392 -9.562599294 0.527620735 1.024806882 0.919371673 0 0.031979579 0.838074059 0.267991963 0.047123451 0.005001738 2.74E-10 9.562599294 -0.105435209 DSAYISSS(ph)PLGSHQVFDFR ddPTM_HeLa_CUDC101_4h_R1 1 DSAYISSSPLGSHQVFDFR 19 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 DSAYISS(0.126)S(0.874)PLGSHQVFDFR 188.27 8.81E-12 62109000 3431.5 2794.7 2040.9 2158 3515.2 3170 3035.6 2789.7 2706.3 2245.1 TRUE FALSE FALSE 3029.264772 2880.801394 2151.237227 2246.012568 3255.890699 3109.537532 3152.684109 3107.268172 2594.745169 2231.746045 1.357351917 1.290828497 0.963925637 1.006392538 1.458898384 1.393320507 1.412653611 1.392303653 1.162652522 1 11.12395715 -13.09502016 0.185795932 5.72E-39 1.363348143 0.224998933 0.161131249 47.65601108 0.641699546 17.81344207 0.229117736 8.03E-14 13.09502016 1.363348143 NMGGPYGGGNYGPGGSGGS(ph)GGYGGR ddPTM_HeLa_CUDC101_4h_R1 5 NMGGPYGGGNYGPGGSGGSGGYGGR 25 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 NMGGPYGGGNYGPGGS(0.081)GGS(0.918)GGYGGR;NMGGPYGGGNYGPGGS(0.003)GGS(0.997)GGYGGR;NMGGPYGGGNYGPGGS(0.092)GGS(0.908)GGYGGR;NMGGPYGGGNYGPGGS(0.003)GGS(0.997)GGYGGR;NMGGPYGGGNYGPGGS(0.004)GGS(0.996)GGYGGR ;;;; 266.5 2.15E-76 314160000 12307 10751.2 10735 10512.9 11707.4 10297.1 9945.9 10461.2 11625.5 11773.7 TRUE FALSE FALSE 10864.39212 11082.43173 11315.36657 10941.6615 10843.76843 10100.69997 10329.51669 11652.06072 11146.29197 11703.66951 0.92828938 0.946919402 0.96682212 0.934891531 0.926527224 0.863037013 0.882587866 0.995590376 0.952375831 1 13.51467332 -13.06883379 0.191127119 1.275718128 0.911217812 0.135582521 0.038529961 35.09540312 0.4859526 3.626750057 0.042998028 8.53E-14 13.06883379 -0.364500317 AEEDAALQAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AEEDAALQAKK 11 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;H0YA99;A0A2R8Y4M7;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 0 1 ; AEEDAALQAK(1)K;AEEDAALQAK(1)K 178.08 9.49E-05 5158500 4677.6 4420.8 4307.1 4839.2 4655.3 5222.6 5092.3 5565.3 4370.7 4523.6 FALSE TRUE FALSE 4129.298819 4556.999608 4539.954854 5036.563493 4311.887794 5122.987606 5288.711717 6198.831256 4190.537896 4496.693426 0.918296719 1.013411228 1.00962072 1.120059345 0.958901883 1.139278826 1.176133486 1.378530994 0.93191541 1 12.13464881 -1 0.456022007 0.965311414 10.80955108 0.848039084 0.052248196 20.99961088 0.22374332 0.011591223 194.8072576 0.1 1 9.84423967 NNQTVLEQSIET(ph)T(ph)NHVVS(ph)IT(ph) ddPTM_HeLa_CUDC101_4h_R1 1 NNQTVLEQSIETTNHVVSIT 20 0 H0YKA3 H0YKA3 ZHX2 4 0 NNQT(0.012)VLEQS(0.183)IET(0.845)T(0.971)NHVVS(0.994)IT(0.995) 63.479 0.019665 25933000 2887.2 2676.8 2648.1 2648.9 2963.3 2528.3 2940 2728.1 2591.3 2153.2 TRUE FALSE FALSE 2548.766793 2759.269035 2791.264296 2756.933592 2744.703263 2480.07689 3053.396785 3038.655877 2484.485517 2140.392671 1.19079402 1.289141508 1.304089822 1.288050379 1.282336321 1.158701823 1.426559167 1.419672156 1.160761552 1 11.06365978 -13.05127018 0.085709018 2.87E-12 1.599928827 0.520900981 0.084540201 48.48142989 0.34869344 9.258135527 1.059919471 8.89E-14 13.05127018 1.599928827 AEEDVEPECIMEK ddPTM_HeLa_CUDC101_4h_R1 2 AEEDVEPECIMEK 13 0 B4DDD6;Q9UJU6-4;Q9UJU6-2;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 0 0 ; ; 187.85 2.09E-10 24584000 5008 4984.6 4943.9 4619.1 5482.8 4472 4436.8 5341.4 5096.5 3212.2 FALSE FALSE TRUE 4420.969832 5138.169618 5211.182188 4807.486863 5078.344767 4386.704051 4607.928862 5949.443385 4886.420113 3193.093692 1.384541219 1.609150909 1.632016687 1.505589039 1.590415208 1.373810002 1.443092282 1.863222304 1.530309031 1 11.64073917 -8.409716736 0.588916251 0.998512155 1.572292611 0.07425277 0.204654851 0.299653145 0.220054962 0.07945338 0.035370126 3.89E-09 8.409716736 0.573780456 VQS(ph)SPNLLAAGR ddPTM_HeLa_CUDC101_4h_R1 1 VQSSPNLLAAGR 12 0 O94875-12;O94875-11;O94875-9;C9J4Z9;C9IZT7;C9JWC3;C9JN77;C9JI79;C9J372;C9JZ60;C9JDX2;C9JBB0;C9JEA9;C9JG84;C9J9D3 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 VQS(0.881)S(0.119)PNLLAAGR 125.47 0.0024466 28009000 1293.3 1053.4 1077.3 1122.5 1112 1310.3 1127.6 1057.4 950.93 915.71 TRUE FALSE FALSE 1141.701335 1085.854005 1135.542097 1168.280402 1029.969975 1285.308211 1171.09191 1177.770142 911.7322629 910.2633162 1.254253922 1.192900984 1.247487487 1.283453239 1.131507726 1.412018026 1.286541915 1.293878508 1.00161376 1 9.830140131 -13.04404398 0.192562036 4.32E-16 1.321439372 0.739459905 0.063843008 16.35627243 0.229556455 6.17357959 0.072708331 9.04E-14 13.04404398 1.321439372 AEEILEK(ac)GLK ddPTM_HeLa_CUDC101_4h_R1 2 AEEILEKGLK 10 1 P62913;Q5VVC8;P62913-2 P62913 RPL11 60S ribosomal protein L11 0 1 ; AEEILEK(1)GLK;AEEILEK(1)GLK 125.74 0.0024526 931090 1045.85 755.55 625.32 737.88 1081.27 952.25 997.82 898.83 758.74 867.6 FALSE TRUE FALSE 923.2570484 778.8276 659.1266907 767.9739358 1001.506866 934.0874178 1036.306252 1001.149174 727.4644161 862.4394766 1.070518075 0.903051891 0.764258488 0.890467049 1.161248868 1.083075906 1.201598813 1.160834124 0.843496194 1 9.752279406 -5.738816374 24.92508591 0.991874332 1.150353498 0.485316125 0.102776313 211.5941815 233124.3078 0.015967477 0.031916426 1.82E-06 5.738816374 0.158479166 DWEDDSDEDMS(ph)NFDR ddPTM_HeLa_CUDC101_4h_R1 2 DWEDDSDEDMSNFDR 15 0 B4DDC6;A0A087WYT3;Q15185-2;Q15185-4;Q15185 B4DDC6 PTGES3 Prostaglandin E synthase 3 1 0 DWEDDS(0.19)DEDMS(0.81)NFDR;DWEDDS(0.282)DEDMS(0.718)NFDR ; 106.4 0.0064542 68500000 3379.9 3560 2579.83 2755.5 2820.6 2397.8 2722.8 2425.41 3372.7 4064.1 TRUE FALSE FALSE 2983.713246 3669.67938 2719.303413 2867.8812 2612.529957 2352.06596 2827.819308 2701.508871 3233.675878 4039.926552 0.73855631 0.908352994 0.673107141 0.70988449 0.646677588 0.582205129 0.699968 0.668702472 0.800429373 1 11.98011335 -13.016821 0.135973713 1.957513281 0.560708635 0.439063874 0.090246816 22.04297385 0.239591742 5.803711502 0.217708008 9.62E-14 13.016821 -1.396804646 EQDRVHS(ph)PCPTSGSEK ddPTM_HeLa_CUDC101_4h_R1 1 EQDRVHSPCPTSGSEK 16 1 X6RLP6;Q96LT9-2;Q96LT9 X6RLP6 RNPC3 RNA-binding protein 40 1 0 EQDRVHS(0.98)PCPT(0.017)S(0.003)GSEK 77.1 0.011694 13374000 4043.8 3595.8 3887.6 3374.1 3991.3 3818.5 3618.7 3938.2 3917.3 2905.7 TRUE FALSE FALSE 3569.791894 3706.582336 4097.775415 3511.710382 3696.869751 3745.668475 3758.274471 4386.508769 3755.827236 2888.416767 1.235899173 1.28325745 1.418692573 1.215790748 1.279894852 1.296789479 1.301153806 1.518655071 1.300306548 1 11.49606321 -13.00322867 0.129609741 3.16E-18 1.469090011 0.075332468 0.12222397 25.54032922 0.267683975 6.706524362 0.290624827 9.93E-14 13.00322867 1.469090011 ICTLPSPPS(ph)PLASLAPVADSSTR ddPTM_HeLa_CUDC101_4h_R1 2 ICTLPSPPSPLASLAPVADSSTR 23 0 Q9UER7-3;Q9UER7;Q9UER7-2 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 ICT(0.005)LPS(0.09)PPS(0.897)PLAS(0.005)LAPVADS(0.002)S(0.001)T(0.001)R;ICTLPS(0.002)PPS(0.998)PLASLAPVADSSTR ; 98.326 6.55E-05 19955000 2617.2 2156.69 2371.7 1877.98 2605.3 2574.9 2641.9 2203 2347.4 1857.36 TRUE FALSE FALSE 2310.415783 2223.135063 2499.921276 1954.572142 2413.112209 2525.788073 2743.798968 2453.780615 2250.639178 1846.31234 1.251367785 1.204094786 1.354007782 1.058635692 1.306990241 1.36801776 1.486096858 1.329017069 1.21899157 1 10.85043092 -12.99501325 0.075409317 4.90E-16 1.677492628 0.340627054 0.112391544 82.48894795 0.532876146 14.88379147 2.223629953 1.01E-13 12.99501325 1.677492628 ALSQTVPSSGTNGVSLPADCT(ph)GAVPAASPDTAAWR ddPTM_HeLa_CUDC101_4h_R1 1 ALSQTVPSSGTNGVSLPADCTGAVPAASPDTAAWR 35 0 B7Z7F3;Q9H6Z4-3;Q9H6Z4-2;Q9H6Z4;K7EN31 B7Z7F3 RANBP3 Ran-binding protein 3 1 0 ALSQTVPS(0.001)S(0.003)GT(0.009)NGVS(0.396)LPADCT(0.571)GAVPAAS(0.018)PDT(0.001)AAWR 118.63 4.19E-18 7994800 1903 1632.3 1444.4 1478.7 2076.9 1578.8 1862.1 1668.5 2391 1290.6 TRUE FALSE FALSE 1679.933225 1682.589228 1522.488633 1539.007777 1923.691225 1548.68702 1933.921821 1858.435296 2292.441968 1282.923454 1.3094571 1.311527374 1.186733806 1.199609979 1.499459082 1.207154656 1.507433522 1.448594061 1.786889125 1 10.32521938 -12.98218785 0.124624756 6.10E-14 1.5154015 0 0.264245804 35.20306459 0.358798873 9.136198107 0.446177969 1.04E-13 12.98218785 1.5154015 AEEPLK(ac)TVQEK ddPTM_HeLa_CUDC101_4h_R1 2 AEEPLKTVQEK 11 1 Q96PN7;Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5 Q96PN7 TRERF1;BCAR2 Transcriptional-regulating factor 1 0 1 ; AEEPLK(1)TVQEK;AEEPLK(1)TVQEK 226.4 5.02E-20 4149900 2290.4 1965.57 1955.95 1744.01 2222.1 2093.76 2365.5 2639.2 2095.8 1840.95 FALSE TRUE FALSE 2021.922784 2026.126882 2061.694573 1815.138266 2058.18011 2053.825016 2456.738127 2939.63586 2009.410237 1829.999948 1.10487587 1.107173191 1.126609089 0.991878862 1.124688617 1.122308784 1.34247989 1.606358439 1.098038412 1 10.83762789 -4.33331482 1.260158019 1.058829194 1.81501154 0.926481441 0.04694699 0.250936796 0.366318826 0.008006119 0.236290949 4.64E-05 4.33331482 0.756182346 AGS(ph)ISTLDSLDFAR ddPTM_HeLa_CUDC101_4h_R1 1 AGSISTLDSLDFAR 14 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 AGS(0.986)IS(0.014)T(0.001)LDSLDFAR 209.11 1.11E-23 21062000 1041.8 826.94 784.71 728.77 1159.6 1019.4 682.25 965.87 1034.3 730.65 TRUE FALSE FALSE 919.6817833 852.4170412 827.1337962 758.4923906 1074.058618 999.9566434 708.564611 1075.820737 991.6657162 726.3040613 1.266248989 1.173636617 1.13882579 1.044317981 1.478800237 1.376774132 0.975575725 1.481226382 1.365358903 1 9.504429837 -12.95650277 0.229768715 2.44E-08 1.274434304 0 0.195975549 39.01409678 0.633361458 17.66515856 0.115109277 1.11E-13 12.95650277 1.27443428 DGGSGNS(ph)TIIVSR ddPTM_HeLa_CUDC101_4h_R1 5 DGGSGNSTIIVSR 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 DGGS(0.047)GNS(0.92)T(0.032)IIVSR;DGGS(0.218)GNS(0.714)T(0.067)IIVSR;DGGS(0.002)GNS(0.974)T(0.025)IIVSR;DGGSGNS(0.5)T(0.5)IIVSR;DGGS(0.33)GNS(0.617)T(0.053)IIVSR ;;;; 146.2 0.00051412 148809300 7724.7 6470.3 5675.15 5790.94 6831.6 6995.2 6465.89 6546.2 6745 5754.53 TRUE FALSE FALSE 6819.222376 6669.642274 5981.965775 6027.119564 6327.646478 6861.778215 6715.281543 7291.392947 6466.968245 5720.3018 1.192108846 1.165959858 1.045743037 1.053636639 1.106173538 1.199548285 1.17393833 1.274651793 1.130529205 1 12.48187555 -12.94091651 0.320596707 6.17E-11 1.160517971 0.037006144 0.077928402 26.56424404 0.507270347 16.99711238 0.027096623 1.15E-13 12.94091651 1.160517971 TST(ph)SPPPEK ddPTM_HeLa_CUDC101_4h_R1 1 TSTSPPPEK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 TST(0.5)S(0.5)PPPEK 114.4 0.038807 540870000 9864 6058.4 9044.5 9807.7 7322.6 6442.7 6663.7 4306.2 9004.3 17329 TRUE FALSE FALSE 8707.756873 6245.052123 9533.473028 10207.7004 6782.426387 6319.816232 6920.721141 4796.400402 8633.138943 17225.92634 0.505502967 0.362537956 0.553437466 0.592577734 0.393733623 0.366878164 0.401761914 0.278440782 0.501171245 1 14.07229395 -12.93523205 0.180046843 2.972586823 0.294095066 0.115996751 0.180343236 10.58454745 0.146844712 7.38917438 0.120591336 1.16E-13 12.93523205 -2.678491757 AVTTPGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AVTTPGKK 8 1 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 ; AVTTPGK(1)K;AVTTPGK(1)K 113.26 0.0038181 688260000 8575.1 9689.8 13956.3 15845 16222.3 14517.5 15353.6 14953.6 4895.3 5071.4 FALSE TRUE FALSE 7569.939777 9988.331253 14710.81979 16491.22759 15025.61325 14240.60288 15945.7935 16655.85738 4693.513662 5041.235087 1.501604199 1.981326219 2.918098351 3.271267319 2.980542067 2.824824201 3.163072783 3.303923957 0.931024557 1 12.29956152 -7.005112497 1.353673569 1.187368173 3.12069263 0.957133989 0.185681828 0.060403883 0.216498411 0.039172042 0.051943665 9.88E-08 7.005112497 1.933324457 up AEEYEFLTPVEEAPK ddPTM_HeLa_CUDC101_4h_R1 2 AEEYEFLTPVEEAPK 15 0 J3KTF8;J3QQX2;P52565;J3KRE2 J3KTF8 ARHGDIA Rho GDP-dissociation inhibitor 1 0 0 ; ; 169.89 4.26E-06 30382000 5974.3 5032.9 4717.7 4587.3 5833.2 4797.9 4754.1 4837.5 5412.9 4966.6 FALSE FALSE TRUE 5274.00161 5187.957684 4972.753132 4774.389922 5402.896457 4706.388051 4937.46723 5388.181446 5189.777971 4937.058442 1.068247758 1.050819581 1.007229951 0.96705153 1.094355378 0.953277768 1.0000828 1.091374856 1.05118828 1 12.26943601 -6.746541018 24.84027087 1.034522961 1.016131107 0.046450863 0.046205297 752.9713315 1255441.864 0.007510343 0.010595089 1.79E-07 6.746541018 -0.018391854 AEFFQHLIEDR ddPTM_HeLa_CUDC101_4h_R1 1 AEFFQHLIEDR 11 0 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 0 0 128.85 0.0021534 5006500 4009.3 3585.5 2626.2 2994 3986 3415.6 3440.3 2969.3 3454 3348.8 FALSE FALSE TRUE 3539.335932 3695.965005 2768.180316 3116.108261 3691.960721 3350.453121 3572.993523 3307.31311 3311.624658 3328.881189 1.063220863 1.11027243 0.831564769 0.936082751 1.109069538 1.006480235 1.073331645 0.993520923 0.994816117 1 11.70082166 -5.743061594 24.99966017 1.014866077 1.044787011 0.057030452 0.078046406 883.482977 1201813.013 0.011824785 0.023615951 1.81E-06 5.743061594 0.029920934 IVQK(ac)HPHTGDTK ddPTM_HeLa_CUDC101_4h_R1 2 IVQKHPHTGDTK 12 1 P51397;B4DQ75 P51397 DAP Death-associated protein 1 0 1 ; IVQK(1)HPHTGDTK;IVQK(1)HPHTGDTK 99.539 0.0047568 40768000 7063.7 8678.6 13006.6 15911.6 14814.7 12911 12909.1 9788.6 4435.8 4890.3 FALSE TRUE FALSE 6235.703794 8945.977379 13709.77614 16560.54382 13721.8491 12664.74419 13407.00831 10902.89466 4252.954447 4861.212278 1.282746656 1.840277048 2.820238112 3.406669546 2.82272164 2.605264585 2.757955741 2.24283451 0.874875279 1 12.24710042 -6.993082438 2.326075158 1.126823737 2.802579765 0.876793091 0.29073642 0.071636553 0.775593307 0.051506499 0.067331614 1.02E-07 6.993082438 1.675756028 up AEFTVETR ddPTM_HeLa_CUDC101_4h_R1 1 AEFTVETR 8 0 P21333-2;P21333;Q60FE5;A0A087WWY3;F8WE98 P21333-2 FLNA Filamin-A 0 0 125.81 0.035239 11366000 1676.4 1143.7 1205 1383.5 1249.3 1137.9 1293 1027.6 1223.6 1406.1 FALSE FALSE TRUE 1479.894933 1178.936041 1270.145945 1439.92511 1157.141628 1116.196453 1342.871443 1144.57783 1173.16269 1397.736455 1.058779664 0.843460895 0.908716333 1.030183555 0.827868247 0.79857433 0.960747241 0.818879572 0.839330395 1 10.44887665 -7.264849282 24.97533659 1.027757065 0.888130008 0.030523663 0.090308579 186.1679806 1363557.967 0.011564159 0.013507286 5.43E-08 7.264849282 -0.139627057 SSPQPQQTS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SSPQPQQTSPK 11 0 Q9Y6V0-6;Q9Y6V0 Q9Y6V0-6 PCLO Protein piccolo 1 0 SSPQPQQT(0.104)S(0.896)PK 110.31 0.00091182 0 1087.6 999.45 1121.7 1236.6 794.52 825.8 734.37 684.11 795.85 1378.1 TRUE FALSE FALSE 960.1131767 1030.24187 1182.342495 1287.033893 735.9098425 810.0492409 762.6948969 761.9863171 763.0447261 1369.903 0.700862161 0.752054613 0.863084828 0.939507318 0.537198504 0.591318685 0.556751023 0.556233775 0.557006391 1 10.41985803 -12.93235128 0.052372233 2.267525961 6.59E-14 0 0.167973532 194.6067248 0.897950212 37.1250793 9.886192271 1.17E-13 12.93235128 -2.267525961 ATS(ph)PEAGGGGGALK ddPTM_HeLa_CUDC101_4h_R1 2 ATSPEAGGGGGALK 14 0 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 0 AT(0.008)S(0.992)PEAGGGGGALK;AT(0.001)S(0.999)PEAGGGGGALK ; 193 2.16E-12 149336000 16168.4 14023 13451.9 12849.5 14649.8 16098.1 16056.9 13029 11791.1 11144.3 TRUE FALSE FALSE 14273.16466 14455.03201 14179.1504 13373.55815 13569.11344 15791.05556 16676.22001 14512.16869 11305.06587 11078.01321 1.288422788 1.304839752 1.279936225 1.207216303 1.224868863 1.425441121 1.505343937 1.309997418 1.020495792 1 13.43541154 -12.92937443 0.147803015 5.18E-11 1.446649315 0.739714632 0.076041181 23.08571821 0.275091709 6.8898654 0.213239013 1.18E-13 12.92937443 1.446649315 TILET(ph)SFHQHR ddPTM_HeLa_CUDC101_4h_R1 1 TILETSFHQHR 11 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 TILET(0.587)S(0.413)FHQHR 122.39 0.0052512 17159000 3497.1 2802.4 2488.1 2757.9 3297.5 2990.5 2830 2997.9 2876.2 2622.4 TRUE FALSE FALSE 3087.175239 2888.738622 2622.614212 2870.379083 3054.249995 2933.461195 2939.154048 3339.168818 2757.641819 2606.801848 1.184276911 1.108154279 1.00606581 1.101111342 1.171646398 1.125310386 1.127494232 1.280944626 1.057863996 1 11.34806521 -12.90997016 0.34207015 3.77E-09 1.145525563 0.271150686 0.068504595 27.91598269 0.552640673 19.15745214 0.023556189 1.23E-13 12.90997016 1.145525559 SRSAQRWGRS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SRSAQRWGRSR 11 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SRSAQRWGRS(1)R 84.687 0.020837 45184000 1373.3 1138.9 853.21 1180 1322.6 1302 1205.1 1020.2 1329.4 961.72 TRUE FALSE FALSE 1212.323856 1173.988159 899.3371134 1228.1255 1225.034433 1277.166519 1251.581111 1136.335444 1274.601569 955.9996467 1.268121657 1.228021541 0.940729546 1.28465058 1.281417245 1.335948736 1.309185746 1.188635841 1.333265733 1 9.900866275 -12.89959781 0.239226862 4.00E-11 1.267991378 0 0.147836347 26.57759201 0.45251051 12.545737 0.073842466 1.26E-13 12.89959781 1.267991378 VIQPMGMS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 VIQPMGMSPR 10 0 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3 H0YE35 RIC8A Synembryn-A 1 0 VIQPMGMS(1)PR;VIQPMGMS(1)PR ; 106.79 0.0095916 79194000 5265.1 3902.4 4113.9 4220.3 4959.6 4682.5 4687.4 4173.5 4067.4 3640.2 TRUE FALSE FALSE 4647.932959 4022.628319 4336.309878 4392.422076 4593.740189 4593.189114 4868.194588 4648.59437 3899.74005 3618.547929 1.284474616 1.11166921 1.198356347 1.213863175 1.26949823 1.269345938 1.345344786 1.284657399 1.077708553 1 11.82119517 -12.88361249 0.22780845 8.21E-10 1.290590005 0.678349907 0.058862027 14.32578306 0.238220485 6.450240933 0.046721163 1.31E-13 12.88361249 1.290590005 VQGGVPAGS(ph)DEYEDECPHLIALSSLNR ddPTM_HeLa_CUDC101_4h_R1 1 VQGGVPAGSDEYEDECPHLIALSSLNR 27 0 Q9BVS4-2;Q9BVS4;H0Y919;H0Y8R4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 0 VQGGVPAGS(0.997)DEY(0.003)EDECPHLIALSSLNR 92.48 2.38E-06 21921000 1644 1248 1193.5 1027.4 1854.3 1514.5 1281.4 1498.3 1211.1 1064.1 TRUE FALSE FALSE 1451.292812 1286.449401 1258.02422 1069.301813 1717.511983 1485.613436 1330.824027 1668.860416 1161.177945 1057.770686 1.372029714 1.21618931 1.189316585 1.010901349 1.62370919 1.4044759 1.258140394 1.577714752 1.097759619 1 10.04681118 -12.86696456 0.167091541 1.23E-16 1.436119636 0.362802744 0.16500448 40.28740588 0.539320945 13.72079386 0.302248667 1.36E-13 12.86696456 1.436119636 NTNAAEES(ph)LPEIQK ddPTM_HeLa_CUDC101_4h_R1 1 NTNAAEESLPEIQK 14 0 Q9NTJ3;E9PD53 Q9NTJ3 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 0 NTNAAEES(1)LPEIQK 132.51 0.0007571 4701700 1340.6 1054.3 1338.1 1070.7 947.01 1153.3 1403.6 1129.5 1177.6 920.16 TRUE FALSE FALSE 1183.4569 1086.781733 1410.441734 1114.367774 877.150959 1131.302724 1457.737322 1258.077714 1129.05883 914.6868474 1.293838327 1.188146234 1.541994113 1.218305234 0.958963127 1.236819713 1.593700977 1.37541905 1.23436653 1 9.837134096 -12.71741472 0.199593824 1.14E-12 1.362273274 0.083407171 0.184527785 35.94631418 0.579812797 14.24569802 0.195003702 1.92E-13 12.71741472 1.362273274 QTRGYKSLAVS(ph)KVPS(ph)S(ph)IS(ph)QEQSR ddPTM_HeLa_CUDC101_4h_R1 1 QTRGYKSLAVSKVPSSISQEQSR 23 3 Q9NNX6-12;Q9NNX6-11;M0QZG5;Q9NNX6-6;Q9NNX6-10 Q9NNX6-12 CD209 4 0 QT(0.015)RGY(0.201)KS(0.128)LAVS(0.866)KVPS(0.888)S(0.888)IS(0.507)QEQS(0.507)R 42.172 0.0032797 0 2029.5 1536.8 1346.6 1530.1 1670.1 1371.8 1378.4 896.49 1650.1 2350.8 TRUE FALSE FALSE 1791.605087 1584.146986 1419.401269 1592.504092 1546.90005 1345.635201 1431.56535 998.5427979 1582.08218 2336.817337 0.766685978 0.677907923 0.607407882 0.681484199 0.661968749 0.575840986 0.612613287 0.427308879 0.677024325 1 11.19032925 -12.66907205 0.064509539 2.386156744 1.34E-15 0.326135715 0.114195106 40.24403395 0.2394184 9.366104537 2.003403 2.14E-13 12.66907205 -2.386156744 TVTPAK(ac)AVTTPGK ddPTM_HeLa_CUDC101_4h_R1 2 TVTPAKAVTTPGK 13 1 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 ; TVTPAK(1)AVTTPGK;TVTPAK(1)AVTTPGK 175.48 5.00E-07 25053000 4973.8 5780.7 6851.5 7109 7367.2 7417.2 7398.5 8428.9 3245.5 3412.9 FALSE TRUE FALSE 4390.778704 5958.796515 7221.912815 7398.935748 6823.736334 7275.729268 7683.862623 9388.411905 3111.719116 3392.599919 1.294222369 1.756410027 2.128725163 2.180904299 2.011358986 2.144588057 2.264889114 2.767320677 0.917207802 1 11.72817559 -6.988809416 0.63154976 1.033903909 2.381164 0.894791063 0.184164825 0.151053146 0.127634393 0.051702841 0.075386673 1.03E-07 6.988809416 1.34726009 up SST(ph)DFSELEQPR ddPTM_HeLa_CUDC101_4h_R1 2 SSTDFSELEQPR 12 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 SS(0.008)T(0.992)DFSELEQPR;SS(0.004)T(0.995)DFSELEQPR ; 210.15 9.57E-23 104907000 5737.9 3786 4730.1 4720.8 4913.2 5760.1 5965.3 4267.5 2835 3703.5 TRUE FALSE FALSE 5065.31206 3902.642172 4985.823514 4913.334629 4550.763024 5650.235689 6195.383619 4753.29495 2718.1401 3681.471417 1.375893355 1.060076728 1.35430184 1.334611646 1.236126132 1.534776465 1.682855282 1.291139985 0.738329812 1 11.84606679 -12.62623023 0.106123479 1.45E-15 1.647166714 0.565812691 0.169722728 55.17704713 0.531270221 13.20284081 1.147718905 2.36E-13 12.62623023 1.647166714 YSCPES(ph)PSQELGGPLPSPGPR ddPTM_HeLa_CUDC101_4h_R1 1 YSCPESPSQELGGPLPSPGPR 21 0 A0A494BZV2;A0A1W2PPU9 A0A494BZV2 1 0 YSCPES(0.767)PS(0.233)QELGGPLPSPGPR 128.72 4.94E-07 8064200 1223.5 957.84 1052.1 1092.8 1260.2 1074.8 1068.2 1180.4 1116.3 827.01 TRUE FALSE FALSE 1080.083185 987.3499151 1108.979708 1137.369107 1167.237557 1054.299981 1109.400832 1314.771965 1070.285642 822.0909077 1.313824511 1.201022789 1.348974545 1.383507708 1.419840003 1.282461551 1.349486804 1.599302404 1.301906677 1 9.683154127 -12.60612019 0.135126678 4.76E-12 1.532172436 0.298788958 0.121939331 19.96439836 0.240626414 5.649227123 0.275304656 2.48E-13 12.60612019 1.532172436 GS(ph)PSGGS(ph)TAEASDTLSIR ddPTM_HeLa_CUDC101_4h_R1 1 GSPSGGSTAEASDTLSIR 18 0 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 2 0 GS(0.999)PS(0.002)GGS(0.666)T(0.332)AEAS(0.001)DTLSIR 134.4 0.00068468 3509000 1732 1243.6 1478.2 1365.7 1542.2 1266.6 1615.4 1607.8 1261 1137.8 TRUE FALSE FALSE 1528.977586 1281.913842 1558.115963 1421.399149 1428.434978 1242.441715 1677.706519 1790.825453 1209.021046 1131.032315 1.351842529 1.133401606 1.377605169 1.256727266 1.262947981 1.098502402 1.483340924 1.583354807 1.068953584 1 10.14342443 -12.60571121 0.208895564 2.01E-17 1.378488119 0.445544927 0.133804344 24.82653553 0.431714183 10.43212343 0.134673054 2.48E-13 12.60571121 1.378488119 NDKS(ph)EEEQSSSSVK ddPTM_HeLa_CUDC101_4h_R1 8 NDKSEEEQSSSSVK 14 1 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2D6;G3V2Q1;P07910-4;B4DY08;G3V4W0;G3V5V7 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK;NDKS(0.991)EEEQS(0.009)SSSVK;NDKS(0.999)EEEQS(0.001)SSSVK;NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK ;;;;;;; 266.44 5.80E-70 2824598700 25449.9 16377.9 23440.8 27016.2 21052.1 20862.8 21529.7 14960.6 25008.5 25916.5 TRUE FALSE FALSE 22466.7013 16882.48369 24708.08055 28118.03741 19499.12852 20464.87685 22360.10774 16663.65423 23977.63904 25762.34751 0.872075082 0.655316201 0.959077217 1.091439257 0.756884772 0.794371586 0.86793751 0.646822042 0.930724152 1 14.65297644 -12.55665277 0.026989746 2.107098966 6.57E-06 0.203005475 0.123188206 1321.19088 3.407960126 182.6825798 96.1200671 2.78E-13 12.55665277 -2.107092397 KKPEDSPSDDDVLIVYELT(ph)PTAEQK ddPTM_HeLa_CUDC101_4h_R1 2 KKPEDSPSDDDVLIVYELTPTAEQK 25 2 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 KKPEDSPSDDDVLIVY(0.157)ELT(0.817)PT(0.026)AEQK;KKPEDSPSDDDVLIVY(0.035)ELT(0.948)PT(0.017)AEQK ; 80.117 7.08E-05 25775000 8823.2 6701 7837 7640.1 8639.3 7824 7012.2 7314.5 8520.3 7530 TRUE FALSE FALSE 7788.957871 6907.449867 8260.691926 7951.696301 8001.996051 7674.770236 7282.662903 8147.153114 8169.089628 7485.211225 1.040579569 0.922812952 1.103601712 1.062320897 1.069040781 1.02532447 0.9729402 1.088433294 1.091363942 1 12.86982731 -12.55157523 0.210498422 0.887512422 1.042504706 0 0.058166062 76.11614526 1.358340141 3.613107956 0.047714932 2.81E-13 12.55157523 0.154992284 INPYMS(ph)SPCHIEMILTEK ddPTM_HeLa_CUDC101_4h_R1 2 INPYMSSPCHIEMILTEK 18 0 A0A087WXM6;J3QQT2;J3QLC8;J3KRX5;A0A0A0MRF8;A0A0A6YYL6;P18621-2;P18621;P18621-3 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 1 0 INPY(0.003)MS(0.736)S(0.261)PCHIEMILTEK;INPYMS(0.754)S(0.246)PCHIEMILTEK ; 131.41 4.13E-05 103812000 7666.7 5256.7 5459 5567.3 7706.1 7297.7 6615.5 6652.7 7112.3 4694.4 TRUE FALSE FALSE 6768.021048 5418.652696 5754.130053 5794.358558 7137.636356 7158.508531 6870.662051 7410.016477 6819.127984 4666.4775 1.450349015 1.161186933 1.233077852 1.241698596 1.529555506 1.534028297 1.472344408 1.587925041 1.461300946 1 12.18811822 -12.48184246 0.131341907 1.28E-17 1.615928354 0.093805357 0.175723331 32.86293448 0.399090007 9.491888398 0.535372586 3.30E-13 12.48184246 1.615928354 AEGFVDALHR ddPTM_HeLa_CUDC101_4h_R1 2 AEGFVDALHR 10 0 Q96I24;A0A494C1K6 Q96I24 FUBP3 Far upstream element-binding protein 3 0 0 ; ; 113.69 0.0064683 13148100 19926.7 20229 16620.2 19005 21724 20665 18507.7 15593.1 18886 12707.5 FALSE FALSE TRUE 17590.92243 20852.23151 17518.73829 19780.10605 20121.4638 20270.84956 19221.54819 17368.15547 18107.51109 12631.91522 1.392577619 1.650757715 1.386863193 1.565883375 1.592906811 1.604732869 1.521665389 1.374942371 1.433473132 1 13.62478577 -8.564603639 0.583300523 0.988268237 1.541026436 0.216764687 0.15803411 0.240448315 0.164331003 0.06359789 0.024132295 2.73E-09 8.564603639 0.5527582 PVSSAAS(ph)VYAGAGGSGSR ddPTM_HeLa_CUDC101_4h_R1 1 PVSSAASVYAGAGGSGSR 18 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 PVS(0.001)S(0.001)AAS(0.998)VYAGAGGSGSR 163.56 1.60E-05 114590000 558.11 579.52 614.07 525.99 356.38 572.57 577.18 576.03 376.63 407.25 TRUE FALSE FALSE 492.6891918 597.3743243 647.2684817 547.4421457 330.0905574 561.6491812 599.4420259 641.6029268 361.105152 404.8276589 1.217034412 1.47562626 1.598874157 1.352284444 0.815385387 1.387378478 1.48073387 1.584879177 0.891997234 1 8.661164052 -12.4672548 0.124393292 4.59E-10 1.550562164 0.374528156 0.214954128 62.86468533 0.729080034 16.4880357 1.072954186 3.41E-13 12.4672548 1.550562163 FSCPPNFTAKPPASES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 FSCPPNFTAKPPASESPR 18 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 FSCPPNFT(0.007)AKPPAS(0.211)ES(0.783)PR;FSCPPNFTAKPPAS(0.082)ES(0.918)PR ; 91.378 0.002657 81552000 1400.95 1144.64 1346.96 1421.54 1221.76 1171.21 1482.54 1258.48 1413.47 970.22 TRUE FALSE FALSE 1236.732765 1179.905002 1419.780732 1479.516546 1131.633199 1148.871121 1539.722064 1401.740276 1355.206168 964.4490883 1.282320425 1.223397913 1.47211579 1.534053548 1.173346745 1.191220081 1.596478324 1.453410339 1.40516092 1 9.913561273 -12.42865452 0.141396977 1.17E-11 1.527455386 0 0.186007334 30.39430783 0.400542548 8.946554313 0.430547991 3.73E-13 12.42865452 1.527455386 KAARDY(ph)ET(ph)AK ddPTM_HeLa_CUDC101_4h_R1 1 KAARDYETAK 10 2 P55265-5;P55265;P55265-4;A0A3B3IRQ9;P55265-3;P55265-2 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 2 0 KAARDY(1)ET(1)AK 68.371 0.0031082 0 1926.7 1703.5 1327.9 1578.6 1814.5 1820.2 1630.5 1604.8 1481.5 1303 TRUE FALSE FALSE 1700.855147 1755.982816 1399.690291 1642.982131 1680.64795 1785.482718 1693.388931 1787.483945 1420.431943 1295.249698 1.31314846 1.355709882 1.080633559 1.268467488 1.297547456 1.378485338 1.307384154 1.380030389 1.096647191 1 10.33901453 -12.3883284 0.247879339 1.81E-08 1.334728654 0.570993901 0.085180201 12.24116766 0.265328718 6.031687935 0.053145922 4.09E-13 12.3883284 1.334728636 AEGYEVAHGGR ddPTM_HeLa_CUDC101_4h_R1 2 AEGYEVAHGGR 11 0 A8MU39;H0YDU8;P53041 A8MU39 PPP5C Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 5 0 0 ; ; 116.55 0.0047277 8767700 9213.4 7539.8 7671.3 7426 6936.6 8043.5 6743 7388.8 7773.3 6574.3 FALSE FALSE TRUE 8133.419219 7772.092301 8086.033682 7728.864378 6424.900838 7890.083639 7003.079769 8229.911125 7452.881284 6535.195771 1.244556323 1.189266944 1.237305502 1.18265231 0.983122934 1.207321695 1.071594488 1.259321283 1.140422039 1 12.67401474 -9.465700436 1.20778067 1.000178965 1.174376352 0.097400003 0.090614817 0.388644146 1.015818357 0.055856181 0.013835397 3.42E-10 9.465700436 0.174197386 AEHIPAGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 AEHIPAGKR 9 1 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4;Q96HC4-6;A0A0A0MSP3 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 0 1 AEHIPAGK(1)R 47.603 0.04001 0 71.978 0 65.073 0 0 54.978 0 0 0 0 FALSE TRUE FALSE 63.54084795 0 68.59104322 0 0 53.92938625 0 0 0 0 0 T(ph)RSLSSLR ddPTM_HeLa_CUDC101_4h_R1 1 TRSLSSLR 8 1 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 T(0.908)RS(0.071)LS(0.021)SLR 90.149 0.034071 12897000 1866.7 1472.2 1361.3 1386.3 1621.6 1878.2 1606.3 1580.8 1325.7 1188.9 TRUE FALSE FALSE 1647.888256 1517.556737 1434.895996 1442.839306 1501.977799 1842.376464 1668.255529 1760.751882 1271.054085 1181.82837 1.394354965 1.2840754 1.214132299 1.220853504 1.270893335 1.558920492 1.411588663 1.489854134 1.075498031 1 10.20680482 -12.33313348 0.210558666 6.98E-14 1.429393462 0.635314317 0.100859273 15.83916154 0.306438161 6.807026133 0.10939567 4.64E-13 12.33313348 1.429393462 GGDSIGETPT(ph)PGASKR ddPTM_HeLa_CUDC101_4h_R1 1 GGDSIGETPTPGASKR 16 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 GGDSIGET(0.049)PT(0.943)PGAS(0.007)KR 127.37 0.0049117 26679000 2939.7 2927.3 2456.7 2653.3 2894.9 2972.8 3029.1 2667.1 2526.6 2115 TRUE FALSE FALSE 2595.112822 3017.486643 2589.516633 2761.513043 2681.348994 2916.098793 3145.933402 2970.711883 2422.452479 2102.419886 1.234345641 1.435244531 1.231683857 1.313492638 1.275363219 1.387020173 1.496339253 1.412996473 1.152221064 1 11.03783511 -12.32854051 0.096748124 1.32E-12 1.662598581 0.640446871 0.084462474 28.22738814 0.267372989 6.304226349 0.760197547 4.69E-13 12.32854051 1.662598581 AEIIADK(ac)QSGK ddPTM_HeLa_CUDC101_4h_R1 2 AEIIADKQSGK 11 1 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 1 ; AEIIADK(1)QSGK;AEIIADK(1)QSGK 181.68 1.62E-26 0 2255.62 2218.47 1725.16 2288.7 2618.3 2218.9 2102.41 2476.9 2367 2267.9 FALSE TRUE FALSE 1991.219643 2286.818431 1818.427368 2382.043079 2425.153225 2176.578179 2183.500658 2758.860284 2269.431258 2254.41043 0.883255159 1.014375378 0.806608834 1.056614646 1.075737227 0.965475563 0.968546201 1.22376132 1.006662863 1 11.13853448 YSPTSPTYSPT(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 3 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPTS(0.048)PT(0.231)Y(0.001)S(0.311)PT(0.399)S(0.01)PK;YSPTSPT(0.003)Y(0.003)S(0.032)PT(0.855)S(0.107)PK;YSPTSPTYSPT(0.98)S(0.019)PK ;; 127.78 0.0047906 172754000 10847.7 8505.7 9825.8 9203.8 9925.5 9923.2 9558.9 8355.6 9533 9331.4 TRUE FALSE FALSE 9576.14905 8767.750535 10357.01247 9579.170746 9193.315639 9733.931493 9927.589975 9306.76773 9140.045705 9275.896418 1.032369123 0.945218676 1.116551113 1.032694881 0.991097272 1.049379063 1.070256666 1.003328122 0.985354438 1 13.17927099 -12.32592349 0.167662206 0.916048676 1.042607271 0.109388575 0.043515836 82.12224591 1.301866027 2.399047289 0.077472103 4.72E-13 12.32592349 0.126558595 T(ph)PS(ph)PESHR ddPTM_HeLa_CUDC101_4h_R1 2 TPSPESHR 8 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 T(1)PS(0.994)PES(0.006)HR;T(1)PS(0.994)PES(0.006)HR ; 100.82 0.02276 31307000 2743.6 1037.91 2482.5 2411.9 1379.34 1773.47 1406.51 633.52 2597.5 3955.1 TRUE FALSE FALSE 2421.999367 1069.886777 2616.711459 2510.267707 1277.588836 1739.644015 1460.759562 705.637356 2490.429951 3931.574889 0.616037958 0.27212677 0.665563173 0.638489099 0.324955997 0.442480193 0.371545654 0.179479566 0.633443345 1 11.94089162 -12.31156747 0.103907204 2.548931399 4.04E-14 0.422592785 0.175083454 29.1544989 0.296898016 10.61883042 1.11815324 4.88E-13 12.31156747 -2.548931399 KYEQGFITDPVVLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 KYEQGFITDPVVLSPK 16 1 P12268;H0Y4R1 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 1 0 KYEQGFITDPVVLS(1)PK;KYEQGFITDPVVLS(1)PK ; 139.44 0.00018276 79182000 12783.6 12045.5 11105.3 11025.3 11294.9 11745.1 10543.9 10688.5 12695.9 13020.9 TRUE FALSE FALSE 11285.12579 12416.60758 11705.68611 11474.95939 10461.69773 11521.08179 10950.58175 11905.23564 12172.56963 12943.45111 0.871879199 0.959296518 0.904371331 0.886545582 0.808261849 0.890108959 0.846032612 0.919788358 0.940442354 1 13.65993471 -12.30429294 0.251403378 1.380330392 0.867916469 0.363048049 0.042147242 13.55989444 0.308216039 2.586972203 0.023740202 4.96E-13 12.30429294 -0.512413924 AEISFEDR ddPTM_HeLa_CUDC101_4h_R1 3 AEISFEDR 8 0 P21333-2;P21333;Q60FE5;H0Y5C6 P21333-2 FLNA Filamin-A 0 0 ;; ;; 138.83 0.02587 75541000 9242.1 7410.5 6537.4 6426.5 6821.8 6693.3 6027.4 5143.2 7659.1 8770.1 FALSE FALSE TRUE 8158.755048 7638.808721 6890.831619 6688.600448 6318.569405 6565.636454 6259.878837 5728.681098 7343.388656 8717.935055 0.935858663 0.876217668 0.79042016 0.767223018 0.724778215 0.753118303 0.718046051 0.65711445 0.842331195 1 13.08977074 -6.765861336 0.620208164 0.989271464 0.693929868 0.744094312 0.051037814 0.091487825 0.073156215 0.006115698 0.010637524 1.71E-07 6.765861336 -0.295341596 AEISFEDRK ddPTM_HeLa_CUDC101_4h_R1 1 AEISFEDRK 9 1 P21333-2;P21333;Q60FE5;H0Y5C6 P21333-2 FLNA Filamin-A 0 0 96.034 0.022439 109990000 4091.5 3450.5 3460.1 3486.8 3755 3534.3 3713.1 3814.5 3699.3 3089.8 FALSE FALSE TRUE 3611.900572 3556.805815 3647.163472 3629.006775 3478.001131 3466.889116 3856.315511 4248.727261 3546.813288 3071.421732 1.175970247 1.158032379 1.187451216 1.181539721 1.132374983 1.128757109 1.255547381 1.38330963 1.154778991 1 11.5846909 -13.52287875 0.050213079 0.160985114 1.626184954 0.396078948 0.071794858 205.4308925 0.817081227 23.74518527 5.826609099 3.00E-14 13.52287875 1.46519984 AEITFDDHK ddPTM_HeLa_CUDC101_4h_R1 4 AEITFDDHK 9 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7 O75369-8 FLNB Filamin-B 0 0 ;;; ;;; 133.23 0.0025629 59309000 26963.6 21738.9 21123.6 21395.5 22076.8 22807.6 19933.1 21335 21876.1 22427.3 FALSE FALSE TRUE 23802.96768 22408.64974 22265.60571 22268.10097 20448.23845 22372.58303 20701.92634 23763.69016 20974.3579 22293.90142 1.067689644 1.005147072 0.998730787 0.998842713 0.917212203 1.003529288 0.928591454 1.065927839 0.940811458 1 14.44436149 -6.690209691 1.9680849 1.031671475 0.978073471 0 0.050798612 0.354121217 2.804116446 0.007211513 0.01063959 2.04E-07 6.690209691 -0.053598004 AEKDEPGAWEETFK ddPTM_HeLa_CUDC101_4h_R1 2 AEKDEPGAWEETFK 14 1 Q14697;Q14697-2;F5H6X6;E9PKU7 Q14697 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 133.48 0.00090466 23496000 7968.1 6739.7 7173.1 6355.4 7582 7818 6812.3 7242.5 7417.9 7535.9 FALSE FALSE TRUE 7034.091397 6947.342168 7560.899483 6614.600682 7022.690965 7668.884676 7075.052693 8066.956925 7112.131022 7491.076132 0.938996117 0.927415774 1.009320871 0.882997391 0.937474248 1.023736048 0.944464129 1.076875576 0.949413795 1 12.87095727 QGSITS(ph)PQANEQSVTPQR ddPTM_HeLa_CUDC101_4h_R1 1 QGSITSPQANEQSVTPQR 18 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QGS(0.002)IT(0.08)S(0.915)PQANEQS(0.002)VT(0.001)PQR 118.23 9.98E-05 19345000 2829.4 2006.7 2406.5 2376.9 2149.4 2022.4 1606.2 1776.8 2469.5 3213.4 TRUE FALSE FALSE 2497.742021 2068.524048 2536.602669 2473.840256 1990.843044 1983.82609 1668.151672 1979.06373 2367.706165 3194.286554 0.781940499 0.64756997 0.794106173 0.774457837 0.623251236 0.621054516 0.522229814 0.619563617 0.74123161 1 11.64127802 -12.2720851 0.057646771 2.259430986 2.50E-16 0.390813982 0.100009757 62.69808977 0.363296374 13.26491061 3.689055648 5.34E-13 12.2720851 -2.259430986 LVHSGSGCRS(ph)PSLGSDLTFATR ddPTM_HeLa_CUDC101_4h_R1 1 LVHSGSGCRSPSLGSDLTFATR 22 1 Q13425 Q13425 SNTB2 Beta-2-syntrophin 1 0 LVHS(0.26)GS(0.307)GCRS(0.338)PS(0.079)LGS(0.008)DLT(0.007)FAT(0.001)R 47.507 0.034897 11382000 681.71 541.18 494.59 411.27 714.69 600.71 513.47 627.91 657.09 455.08 TRUE FALSE FALSE 601.8009872 557.8531143 521.3290315 428.0433683 661.9687426 589.2524576 533.2747099 699.3887363 630.0044721 452.3731639 1.330319823 1.233170221 1.152431384 0.94621742 1.463324519 1.30258049 1.178838075 1.546043824 1.392665442 1 8.821369537 -12.26758544 0.303906923 1.40E-11 1.287984931 0 0.20008025 22.08374155 0.594095683 13.39059585 0.065946514 5.40E-13 12.26758544 1.287984931 AELNEFLTR ddPTM_HeLa_CUDC101_4h_R1 1 AELNEFLTR 9 0 E9PL09;P23396;P23396-2;E9PPU1;H0YEU2;E9PQ96;E9PJH4;F2Z2S8;E9PK82;H0YCJ7;E9PQX2;H0YF32;H0YES8 E9PL09 RPS3 40S ribosomal protein S3 0 0 117.53 0.035948 6081000 1341.5 1209.6 972.52 947.39 1321.3 1214 1196.5 1044.4 1071.5 1188.5 FALSE FALSE TRUE 1184.251404 1246.866342 1025.097373 986.0286592 1223.830331 1190.844973 1242.649406 1163.290274 1027.332316 1181.430749 1.00238749 1.055386736 0.867674532 0.834605549 1.035888335 1.007968494 1.051817389 0.984645334 0.869566259 1 10.20631935 -4.7845282 0.002336673 1.966739747 7.16E-09 0 0.081638346 655029.2819 289.3935579 120104.6776 123489.442 1.64E-05 4.7845282 -1.96673974 T(ph)SSTCS(ph)NESLSVGGTSVTPR ddPTM_HeLa_CUDC101_4h_R1 1 TSSTCSNESLSVGGTSVTPR 20 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 2 0 T(0.719)S(0.008)S(0.259)T(0.014)CS(0.999)NES(0.001)LSVGGTSVTPR 227.36 2.10E-33 94805000 2006.4 1705.3 1589.2 1299.5 1773.9 1745.8 1747.4 1896.5 1910.8 1306 TRUE FALSE FALSE 1771.212834 1757.838272 1675.116959 1352.499227 1643.042931 1712.501774 1814.797803 2112.389894 1832.036015 1298.231854 1.364327048 1.354024912 1.290306469 1.041800987 1.265600537 1.319103185 1.397899611 1.627128381 1.411177834 1 10.34233234 -12.26597729 0.247215814 3.96E-19 1.371061516 0 0.185519797 18.55184896 0.42269198 9.236976033 0.093453698 5.42E-13 12.26597729 1.371061516 SSSSVGS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 2 SSSSVGSPTR 10 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 SSSSVGS(0.999)PT(0.001)R;SSSSVGS(0.983)PT(0.017)R ; 163.46 3.89E-05 51224000 6583.8 2107.5 6541.3 7061.1 4266.9 3439 3850.3 1619.76 6971.3 9127.4 TRUE FALSE FALSE 5812.056944 2172.429577 6894.942464 7349.082179 3952.139288 3373.406805 3998.807361 1804.146931 6683.940063 9073.109819 0.640580469 0.23943605 0.759931556 0.809984925 0.435588168 0.371802708 0.440731727 0.198845486 0.736675759 1 13.14738141 -12.23234557 0.092674579 2.432733604 6.49E-16 0.426554816 0.190368882 52.32051622 0.486486665 16.54511782 2.254658668 5.86E-13 12.23234557 -2.432733604 AEMELSDLIRK ddPTM_HeLa_CUDC101_4h_R1 1 AEMELSDLIRK 11 1 B4DFN3;Q13563-5;Q13563-3;Q13563 B4DFN3 PKD2 Polycystin-2 0 0 117.04 0.038046 1179200 502.67 328.59 322.69 180.95 470.73 384.54 380.46 552.98 508.3 328.96 FALSE FALSE TRUE 443.7477846 338.7134684 340.1355975 188.3299231 436.0051857 377.2055402 395.1344696 615.929008 487.3476589 327.0033313 1.35701304 1.035810452 1.040159426 0.575926619 1.333335609 1.153522011 1.208349983 1.883555759 1.49034463 1 8.353161523 -4.232328657 2.937507864 1.122164972 2.043963246 0.476457504 0.237519859 0.297650932 3.430347799 0.031733959 0.666065153 5.86E-05 4.232328657 0.921798274 LEPQELSPLS(ph)ATVFPK ddPTM_HeLa_CUDC101_4h_R1 1 LEPQELSPLSATVFPK 16 0 A0A087WUE6;Q3T8J9-2;Q3T8J9-3;Q3T8J9;Q9H869-7;Q9H869-5;Q9H869-6;Q9H869-4;Q9H869-3;Q9H869-2;Q9H869;Q9H869-8;Q9H869-9 A0A087WUE6;Q9H869-7 GON4L;YY1AP1 GON-4-like protein;YY1-associated protein 1 1 0 LEPQELS(0.251)PLS(0.745)AT(0.004)VFPK 151.48 0.00016036 32190000 1786.7 1604.9 1941.3 1316.8 1761.4 1780.8 1431.2 1308.2 1724.4 1844.4 TRUE FALSE FALSE 1577.265734 1654.345067 2046.25255 1370.504796 1631.465031 1746.834207 1486.401863 1457.1202 1653.319502 1833.429427 0.860281673 0.902322742 1.116079256 0.74750889 0.889843376 0.952768719 0.810722159 0.79475118 0.901763372 1 10.84032902 -12.2233364 0.017919386 2.022027148 2.53E-06 0.136262233 0.094507869 3232.288501 5.922670464 407.3940038 273.1439652 5.98E-13 12.2233364 -2.022024618 AENLQLLTENELHR ddPTM_HeLa_CUDC101_4h_R1 2 AENLQLLTENELHR 14 0 O94992 O94992 HEXIM1 Protein HEXIM1 0 0 ; ; 103.79 0.0012337 2926600 3718.6 3251.7 3220.9 2995.6 3190.3 3328 3389 3166.4 3981.6 4107 FALSE FALSE TRUE 3282.711345 3351.881023 3395.031597 3117.773516 2954.957925 3264.523945 3519.714865 3526.850177 3817.476763 4082.571381 0.804079351 0.821022025 0.831591485 0.763678874 0.723798226 0.799624462 0.862131862 0.863879611 0.935066752 1 11.9952624 -9.168575842 0.659909266 1.01837217 0.803970997 0.662065153 0.044414829 0.37746196 0.260080932 0.046233623 0.009725117 6.78E-10 9.168575842 -0.214401172 AMDNHS(ph)DS(ph)EEELAAFCPQLDDSTVAR ddPTM_HeLa_CUDC101_4h_R1 2 AMDNHSDSEEELAAFCPQLDDSTVAR 26 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 2 0 AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR;AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR ; 69.152 0.00042873 7372100 1272.28 1313.34 773.43 863.42 1179.38 1443.58 1199.73 999.42 1140.07 816.85 TRUE FALSE FALSE 1123.145267 1353.802449 815.2439653 898.6339996 1092.379487 1416.046117 1246.003988 1113.189933 1093.075832 811.9913399 1.383198578 1.667262177 1.004005739 1.106703921 1.345309283 1.743917758 1.534504036 1.370938184 1.34616686 1 9.66532053 -12.18514879 0.185966675 3.80E-14 1.500549781 0.053578851 0.23687251 30.55171591 0.557164507 11.79220771 0.314247191 6.53E-13 12.18514879 1.500549781 LHS(ph)PQTHWK ddPTM_HeLa_CUDC101_4h_R1 2 LHSPQTHWK 9 0 B8ZZS4;Q9H8Y5 B8ZZS4 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 LHS(1)PQTHWK;LHS(1)PQTHWK ; 100.09 0.011328 163509000 11542 10670.7 10427.9 10899.5 11603.6 11376.5 9063.9 8112.5 11561.1 11994.4 TRUE FALSE FALSE 10189.06426 10999.45162 10991.66382 11344.02872 10747.62555 11159.51222 9413.497659 9035.994208 11084.54656 11923.05678 0.854568124 0.922536211 0.921883039 0.951436275 0.901415279 0.935960671 0.789520493 0.757858859 0.929673218 1 13.54146653 -12.17187928 0.018412274 2.018513841 1.76E-06 0.410802148 0.054362905 1987.104908 3.780884676 253.4796067 168.8312648 6.73E-13 12.17187928 -2.018512084 AENSAALGKPTAGTTDAGEAAK(ac)ILAEK ddPTM_HeLa_CUDC101_4h_R1 1 AENSAALGKPTAGTTDAGEAAKILAEK 27 2 Q96T17;Q96T17-2;Q96T17-5;Q96T17-4 Q96T17 MAP7D2 MAP7 domain-containing protein 2 0 1 AENSAALGKPTAGTTDAGEAAK(1)ILAEK 98.632 1.79E-06 1820800 945.3 839.52 756.28 753.05 1165.5 638.57 760.14 1028.7 949.66 755.4 FALSE TRUE FALSE 834.493367 865.3846161 797.1667844 783.762634 1079.523387 626.3903412 789.4588544 1145.80305 910.5146128 750.9068472 1.1113141 1.15245269 1.061605427 1.04375481 1.43762624 0.834178492 1.051340599 1.525892398 1.21255335 1 9.552490137 -4.259877721 24.38744095 1.071269099 1.525892606 0.408185579 0.149970659 61.84636663 965681.6253 0.018633513 0.157722558 5.50E-05 4.259877721 0.454623506 AENYDIPSADR ddPTM_HeLa_CUDC101_4h_R1 2 AENYDIPSADR 11 0 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 ; ; 196.11 1.94E-15 86307000 7574.5 5752.4 6599.7 6720.2 7152.2 6120.2 5856.5 5874.6 6553.3 6569.7 FALSE FALSE TRUE 6686.628592 5929.624626 6956.499745 6994.278803 6624.596455 6003.467382 6082.387167 6543.340718 6283.1702 6530.623132 1.023888296 0.907972257 1.065212248 1.070997156 1.014389641 0.91927941 0.931363982 1.001947377 0.962108833 1 12.67300494 -5.278238679 24.17997363 1.012497789 0.948913631 0.205474349 0.048942719 490.5670819 706094.46 0.006534759 0.014653411 5.27E-06 5.278238679 -0.063584159 AEPAK(ac)IEAFR ddPTM_HeLa_CUDC101_4h_R1 2 AEPAKIEAFR 10 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 1 ; AEPAK(1)IEAFR;AEPAK(1)IEAFR 144.77 0.00042898 5677900 1437.4 1216.32 1045.19 944.84 2331.67 1437.27 1591 1916.96 1299.63 1266.91 FALSE TRUE FALSE 1268.910151 1253.793378 1101.696133 983.3746591 2159.667349 1409.856469 1652.365403 2135.178978 1246.058701 1259.374363 1.007571845 0.995568446 0.874796379 0.780843797 1.714873204 1.119489574 1.312052597 1.695428334 0.989426765 1 10.29849149 -4.126814325 0.546648784 0.985183187 2.149691137 0.497317984 0.21832017 2.715929013 0.493248942 0.040769928 2.072005902 7.47E-05 4.126814325 1.16450795 AASDPLLSSVS(ph)PAVS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 AASDPLLSSVSPAVSK 16 0 P19532 P19532 TFE3 Transcription factor E3 2 0 AASDPLLS(0.026)S(0.19)VS(0.783)PAVS(1)K 119.47 0.00029089 0 2092.1 1430.9 1564.7 1374.8 1952.4 1719.6 1760.6 1828.8 1534.5 1389.5 TRUE FALSE FALSE 1846.867209 1474.984333 1649.292415 1430.870286 1808.375342 1686.801495 1828.506932 2036.9832 1471.247261 1381.235192 1.337112767 1.067873409 1.194070658 1.035935295 1.309245052 1.221226844 1.323820116 1.474754778 1.065167807 1 10.43174328 -12.14641982 0.349484795 4.44E-17 1.262583495 0.326742764 0.122944513 17.49182304 0.560269216 12.21895236 0.043064033 7.14E-13 12.14641982 1.262583495 T(ph)QTPPVSPAPQPTEER ddPTM_HeLa_CUDC101_4h_R1 1 TQTPPVSPAPQPTEER 16 0 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 1 0 T(0.669)QT(0.331)PPVS(0.001)PAPQPTEER 150.59 0.00083827 378020000 1032.2 883.39 744.36 864.12 803.66 649.81 776.72 499.73 808.36 1513.4 TRUE FALSE FALSE 911.2070807 910.6061988 784.6023532 899.3625486 744.3756029 637.4159569 806.6783506 556.6172432 775.0390587 1504.398229 0.605695396 0.605295979 0.521539003 0.597822126 0.494799574 0.423701613 0.536213308 0.369993285 0.515182113 1 10.5549708 -12.1306508 0.161044504 2.195679248 0.352348545 0 0.162331569 5.576915347 0.090455342 2.249850652 0.093243545 7.40E-13 12.1306508 -1.843330703 AEPEK(ac)TEGAAEAK ddPTM_HeLa_CUDC101_4h_R1 2 AEPEKTEGAAEAK 13 1 P80723 P80723 BASP1 Brain acid soluble protein 1 0 1 ; AEPEK(1)TEGAAEAK;AEPEK(1)TEGAAEAK 190.1 1.28E-08 2894600 1176.33 397.52 542.97 404.01 727.14 848 1014.21 742.67 629.73 913.96 FALSE TRUE FALSE 1038.442381 409.76712 572.3246006 420.4872741 673.5003309 831.8258129 1053.328419 827.2125508 603.7722629 908.5237253 1.142999739 0.451025228 0.629950088 0.462824759 0.741312871 0.915579626 1.159384604 0.91050187 0.664564112 1 9.827380379 -7.295305273 24.99505593 1.067527671 0.758491811 0.030157143 0.240812628 586.2919628 432717.0989 0.038914132 0.044501226 5.07E-08 7.295305273 -0.30903586 ADADPSPTS(ph)PPTAR ddPTM_HeLa_CUDC101_4h_R1 1 ADADPSPTSPPTAR 14 0 Q9NWZ5;Q9NWZ5-3;Q9NWZ5-2 Q9NWZ5 UCKL1 Uridine-cytidine kinase-like 1 1 0 ADADPS(0.02)PT(0.136)S(0.646)PPT(0.198)AR 108.23 0.00083629 0 1909.5 1547.1 1514.6 1734.3 1676.8 1501.9 1526.3 1282.2 1893.9 1890.9 TRUE FALSE FALSE 1685.671305 1594.764317 1596.483857 1805.03225 1553.105805 1473.25376 1585.169902 1428.160465 1815.83264 1879.652843 0.896799274 0.848435563 0.849350381 0.960300865 0.826272687 0.78379035 0.843331208 0.759800125 0.966046814 1 10.87625052 -12.12367843 0.026571685 2.096336752 1.46E-08 0.688073206 0.042524069 421.751879 1.168936474 61.3754475 34.38171662 7.52E-13 12.12367843 -2.096336738 TEGAEATPGAQK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 TEGAEATPGAQKR 13 1 H3BM18;X6RHM1;Q16666-3;Q16666-2;Q16666 H3BM18 IFI16 Gamma-interferon-inducible protein 16 0 1 ; TEGAEATPGAQK(1)R;TEGAEATPGAQK(1)R 126.66 0.00019133 2463700 1386.05 2312.9 3404.3 4133.8 4339.3 4173.7 3743 3904.9 704.96 662.44 FALSE TRUE FALSE 1223.57932 2384.157708 3588.346755 4302.394232 4019.198484 4094.093626 3887.368764 4349.418032 675.9012504 658.4997774 1.858131714 3.620589998 5.449275578 6.533630503 6.103568478 6.217304495 5.903371417 6.605041005 1.026425936 1 9.363039143 -6.9790273 1.44481255 1.314980016 6.281297369 0.98614581 0.260495169 0.033174467 0.136216251 0.056582355 0.075625514 1.05E-07 6.9790273 4.966317353 up KANNSQEPS(ph)PQLASSVASTR ddPTM_HeLa_CUDC101_4h_R1 2 KANNSQEPSPQLASSVASTR 20 1 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 KANNS(0.012)QEPS(0.987)PQLASSVASTR;KANNS(0.001)QEPS(0.985)PQLAS(0.005)S(0.005)VAS(0.002)T(0.002)R ; 82.65 0.0016639 73325000 4130 3798.3 3525.1 4238.9 4691.1 3308.2 3491.4 2932.7 4239.9 4338.8 TRUE FALSE FALSE 3645.887661 3915.321121 3715.677569 4411.780664 4345.046899 3245.101597 3626.064468 3266.546714 4065.129527 4312.992625 0.845326662 0.907796851 0.861507981 1.022904755 1.007432026 0.752401379 0.840730505 0.757373591 0.942531064 1 12.07447353 -12.11315606 0.018843097 2.010740379 3.69E-06 0.268030703 0.080369035 2612.162489 5.14884538 336.7084774 223.2842165 7.71E-13 12.11315606 -2.010736685 WKGPPGSADK(ac)AGK ddPTM_HeLa_CUDC101_4h_R1 1 WKGPPGSADKAGK 13 2 P42285 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 0 1 WKGPPGSADK(1)AGK 97.223 0.024858 1014700 397.55 585.76 616.92 857.89 689.93 875.76 813.7 726.37 210.49 317.05 FALSE TRUE FALSE 350.9497916 603.8065713 650.2725613 892.8784623 639.0352384 859.0563371 845.0846816 809.0570247 201.8135131 315.1641725 1.113545962 1.915847752 2.063281991 2.833058261 2.027626533 2.725742366 2.681411008 2.567097073 0.640344083 1 8.29995973 -6.966623862 1.34498118 1.028547542 2.558933171 0.88232121 0.257494166 0.077105041 0.274399746 0.039153243 0.05285641 1.08E-07 6.966623862 1.530385629 up AEQEAQAPHWWR ddPTM_HeLa_CUDC101_4h_R1 1 AEQEAQAPHWWR 12 0 Q96DV4 Q96DV4 MRPL38 "39S ribosomal protein L38, mitochondrial" 0 0 74.46 0.0033531 0 2493.7 1869.9 1696.1 1763.8 1789.4 1820.8 1481.4 1453.4 1670.8 1660.1 FALSE FALSE TRUE 2201.392266 1927.509403 1787.796296 1835.735388 1657.399527 1786.071274 1538.538094 1618.849181 1601.928917 1650.225651 1.333994696 1.168027779 1.083364748 1.11241477 1.004347209 1.082319422 0.932319827 0.980986558 0.970733254 1 10.6884476 -5.771190369 1.122471682 1.159557003 0.979188881 0.162980532 0.103214686 0.547670061 1.349615349 0.021313245 0.06117554 1.69E-06 5.771190369 -0.180368122 SDPDGGDS(ph)PLPASGGPLTCK ddPTM_HeLa_CUDC101_4h_R1 1 SDPDGGDSPLPASGGPLTCK 20 0 Q8N1G0 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 SDPDGGDS(1)PLPASGGPLTCK 197.1 2.80E-17 21045000 1400.9 1279.5 1208.4 933.93 1344.7 1572 1363.1 1136.1 1836.7 915.33 TRUE FALSE FALSE 1236.688626 1318.919878 1273.729759 972.0197022 1245.50416 1542.016719 1415.675224 1265.429032 1760.990449 909.8855765 1.359169392 1.44954477 1.399879053 1.068287846 1.368858011 1.694736964 1.555882696 1.390756227 1.935397696 1 9.829541319 -12.1122329 0.155563862 3.20E-12 1.571913088 0 0.327908677 24.17024162 0.381468233 8.009542197 0.368170631 7.72E-13 12.1122329 1.571913088 DGGQTES(ph)NEEGKENR ddPTM_HeLa_CUDC101_4h_R1 2 DGGQTESNEEGKENR 15 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;Q5VU79;Q5VU78;Q5VU77;Q5VU81;Q5VU80 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 DGGQT(0.003)ES(0.997)NEEGKENR;DGGQT(0.006)ES(0.994)NEEGKENR ; 80.596 0.010867 40551000 6135.8 4034.5 5981.7 5838.6 4939.8 4640.7 5070.5 2721.1 6047.3 6963.3 TRUE FALSE FALSE 5416.570825 4158.798163 6305.088796 6076.723345 4575.400795 4552.186379 5266.070884 3030.859025 5798.027734 6921.881982 0.78252863 0.600818993 0.910892271 0.877900455 0.661005317 0.657651545 0.760785997 0.437866325 0.837637473 1 12.75694863 -12.08729723 0.048529144 2.159112965 5.80E-12 0.39427489 0.122972958 196.1652096 0.997901758 36.9030358 13.02323087 8.18E-13 12.08729723 -2.159112965 SGTST(ph)PTTPGSTAITPGT(ph)PPSYSSR ddPTM_HeLa_CUDC101_4h_R1 2 SGTSTPTTPGSTAITPGTPPSYSSR 25 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77 MAP2 Microtubule-associated protein 2 2 0 S(0.086)GT(0.041)S(0.165)T(0.694)PT(0.006)T(0.007)PGSTAIT(0.137)PGT(0.854)PPS(0.007)YS(0.001)SR;S(0.062)GT(0.097)S(0.368)T(0.455)PT(0.007)T(0.003)PGS(0.002)T(0.007)AIT(0.101)PGT(0.872)PPS(0.018)YS(0.006)S(0.004)R ; 126.93 2.17E-10 38591000 2340.5 2270.3 2636.6 2052.55 2335.6 2339 1998.61 1661.32 2516.1 2617.4 TRUE FALSE FALSE 2066.150138 2340.245252 2779.142571 2136.261861 2163.307441 2294.387472 2075.697057 1850.437954 2412.385293 2601.831588 0.794113711 0.899460696 1.068148524 0.821060775 0.831455599 0.881835505 0.797783018 0.711205891 0.927187334 1 11.34531187 -12.08394834 0.021906693 1.994157837 6.32E-06 0.329711426 0.082037811 1788.319583 4.122392166 237.2348631 147.6348863 8.24E-13 12.08394834 -1.99415152 HLDGEEDGS(ph)SDQSQASGTTGGR ddPTM_HeLa_CUDC101_4h_R1 4 HLDGEEDGSSDQSQASGTTGGR 22 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 HLDGEEDGS(0.995)S(0.005)DQSQASGTTGGR;HLDGEEDGS(0.766)S(0.232)DQS(0.002)QASGTTGGR;HLDGEEDGS(0.752)S(0.248)DQSQASGTTGGR;HLDGEEDGS(0.882)S(0.111)DQS(0.007)QAS(0.001)GTTGGR ;;; 184.12 1.46E-13 60231900 6778.4 6071.8 5972.1 5825.7 6182.6 5880.5 5430.7 5476.1 7603.2 7316.9 TRUE FALSE FALSE 5983.846227 6258.864961 6294.969791 6063.297227 5726.521915 5768.33926 5640.163918 6099.477089 7289.792878 7273.378753 0.822705159 0.860516848 0.865480818 0.833628693 0.787326236 0.793075606 0.775453075 0.838602979 1.00225674 1 12.82840999 -12.05228379 0.225467357 1.476648843 0.789970544 0.896602468 0.024756821 6.09951116 0.139603911 1.332521027 0.022423709 8.87E-13 12.05228379 -0.6866783 DSGLES(ph)PAAAEAPLR ddPTM_HeLa_CUDC101_4h_R1 2 DSGLESPAAAEAPLR 15 0 H0YM15;J3KNL7;Q8NBR6-2;Q8NBR6 H0YM15 FAM63B Protein FAM63B 1 0 DS(0.001)GLES(0.999)PAAAEAPLR;DSGLES(1)PAAAEAPLR ; 167.92 3.90E-06 8123900 2520.95 2467.99 2192.08 1895.01 2199.71 2651.43 1929.7 2034.24 2221.76 2617.87 TRUE FALSE FALSE 2225.448063 2544.025847 2310.590475 1972.296699 2037.441776 2600.85839 2004.129175 2265.809659 2130.178112 2602.298793 0.855185449 0.977607127 0.887903603 0.75790555 0.782939216 0.999446488 0.770137995 0.870695427 0.81857553 1 11.3455709 -12.04009926 0.229923027 1.369739711 0.837317625 0 0.094945757 21.35664899 0.50026932 3.697860424 0.05931042 9.12E-13 12.04009926 -0.532422086 HGES(ph)AWNLENR ddPTM_HeLa_CUDC101_4h_R1 2 HGESAWNLENR 11 0 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 1 0 HGES(1)AWNLENR;HGES(1)AWNLENR ; 119.17 0.0044219 10380100 1148.32 915.78 1147.4 1000.32 1066.07 934.73 902.41 974.51 990.53 1242.43 TRUE FALSE FALSE 1013.71567 943.9940963 1209.431915 1041.117373 987.42814 916.9015826 937.216256 1085.444279 949.6999341 1235.039971 0.82079584 0.764342951 0.979265403 0.842982736 0.799511079 0.742406403 0.758854999 0.878873805 0.768962913 1 10.27034202 -12.02243816 0.241478324 1.486295682 0.795679187 0 0.098950176 14.06815864 0.347576966 3.343213106 0.046937331 9.50E-13 12.02243816 -0.690616496 KTVTPAK(ac)AVTTPGK ddPTM_HeLa_CUDC101_4h_R1 2 KTVTPAKAVTTPGK 14 2 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 ; K(0.022)TVTPAK(0.978)AVTTPGK;K(0.02)TVTPAK(0.98)AVTTPGK 109.48 0.011267 8103500 10544.6 12727 17456.4 18074.8 19516.9 20145.1 18551.7 21513 5634.8 6433.4 FALSE TRUE FALSE 9308.577973 13119.10378 18400.14579 18811.96847 18077.17717 19760.86578 19267.24528 23961.95296 5402.531159 6395.133851 1.455572032 2.051419734 2.877210425 2.941606682 2.82670818 3.089984704 3.012797814 3.746904056 0.844787816 1 12.64275884 -6.964383486 0.852966277 1.110746382 3.213166714 0.930503935 0.246717405 0.09036017 0.131451787 0.052203605 0.074046251 1.09E-07 6.964383486 2.102420332 up TSST(ph)CS(ph)NESLSVGGTSVTPR ddPTM_HeLa_CUDC101_4h_R1 1 TSSTCSNESLSVGGTSVTPR 20 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 2 0 T(0.241)S(0.172)S(0.264)T(0.328)CS(0.982)NES(0.011)LS(0.003)VGGTSVTPR 103.9 0.00021341 0 1222.1 990.24 917.51 996.93 1000.5 1021.5 977.74 1263.4 1080 766.79 TRUE FALSE FALSE 1078.847291 1020.748121 967.1133659 1037.589114 926.6951083 1002.016589 1015.451759 1407.220349 1035.481943 762.229099 1.41538455 1.339161837 1.268796176 1.361256236 1.215769786 1.314587164 1.332213321 1.846190799 1.35849175 1 9.574080876 -12.01767579 0.246680195 2.03E-16 1.429487076 0.051993723 0.194547886 15.8774958 0.401019818 8.007506471 0.105759846 9.60E-13 12.01767579 1.429487076 S(ph)TSATDTHHVEMAR ddPTM_HeLa_CUDC101_4h_R1 2 STSATDTHHVEMAR 14 0 H3BQP2;H3BNP3;H3BTL2;H3BS02;O14874-2;O14874-3;O14874 H3BQP2 BCKDK "[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial" 1 0 S(0.333)T(0.333)S(0.333)AT(0.002)DTHHVEMAR;S(0.829)T(0.165)S(0.006)ATDTHHVEMAR ; 101.01 0.005896 55563000 5330.6 3035 2943.2 2970.4 4714.3 4054.6 3751.1 3793.4 3828 3689.8 TRUE FALSE FALSE 4705.755149 3128.504753 3102.318295 3091.545751 4366.535481 3977.26526 3895.781184 4225.225323 3670.20822 3667.852906 1.282972701 0.852952622 0.84581317 0.842876154 1.190488167 1.084357896 1.062142153 1.151961497 1.000642151 1 11.84072007 -11.99196335 13.03009186 0.781541238 1.079124821 0 0.152773892 0 0 0 0.023517531 1.02E-12 11.99196335 0.297583582 TASISSS(ph)PSEGTPT(ph)VGSYGCT(ph)PQSLPK ddPTM_HeLa_CUDC101_4h_R1 1 TASISSSPSEGTPTVGSYGCTPQSLPK 27 0 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 3 0 T(0.003)AS(0.015)IS(0.089)S(0.405)S(0.472)PS(0.184)EGT(0.188)PT(0.596)VGS(0.124)Y(0.085)GCT(0.831)PQS(0.008)LPK 96.098 1.28E-06 8120900 2328.5 1660.8 1608.9 1643.7 1828.4 2127.7 2011.4 1600.3 2388 1904 TRUE FALSE FALSE 2055.55676 1711.967279 1695.882001 1710.737191 1693.522575 2087.117667 2088.980372 1782.471683 2289.565629 1892.674923 1.086059066 0.904522619 0.896023918 0.903872699 0.894777309 1.102734359 1.103718523 0.941773815 1.209698296 1 10.88621093 -11.9544596 9.115645182 0.400752823 1.009335413 0 0.107882444 0 0 0 0.012796698 1.11E-12 11.9544596 0.60858259 METVSNASSSSNPS(ph)SPGR ddPTM_HeLa_CUDC101_4h_R1 3 METVSNASSSSNPSSPGR 18 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 METVSNASSSSNPS(0.5)S(0.5)PGR;METVSNASSSSNPS(0.5)S(0.5)PGR;MET(0.001)VS(0.001)NASSSSNPS(0.499)S(0.499)PGR ;; 374.74 3.15E-276 291217000 11223.6 9084.5 9708 9006.3 10005.8 10653.2 9372 7815.2 8989.7 10402.3 TRUE FALSE FALSE 9907.986622 9364.382677 10232.84385 9373.615843 9267.692068 10450.00796 9733.481179 8704.850778 8619.140761 10340.42666 0.958179672 0.905608926 0.989595902 0.906501845 0.896258189 1.010597368 0.941303633 0.841827041 0.833538213 1 13.33600809 -11.92722347 0.011541214 2.035003225 2.48E-07 0 0.068020877 5140.727893 6.458820783 642.2142575 504.1652094 1.18E-12 11.92722347 -2.035002977 SGAQAS(ph)STPLSPTR ddPTM_HeLa_CUDC101_4h_R1 1 SGAQASSTPLSPTR 14 0 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 S(0.021)GAQAS(0.426)S(0.426)T(0.127)PLSPTR 91.789 0.012906 27539000 2709.8 2472.5 2221.9 2048.9 2462.1 2297 2028.9 2606.6 2353.6 2205.5 TRUE FALSE FALSE 2392.161352 2548.674794 2342.022635 2132.462998 2280.475788 2253.188552 2107.155353 2903.324808 2256.583612 2192.381588 1.09112454 1.16251423 1.068255019 0.972669635 1.040181965 1.027735575 0.961126185 1.324278959 1.029284147 1 11.09828321 -11.89688585 0.009360406 2.49E-05 2.017144538 0.081962837 0.09779333 21844.38436 22.40761616 2660.405484 2189.016925 1.27E-12 11.89688585 2.017119628 NMPGLSAATLASLGGT(ph)SSR ddPTM_HeLa_CUDC101_4h_R1 1 NMPGLSAATLASLGGTSSR 19 0 Q32MZ4-3;Q32MZ4-2;Q32MZ4;C9JTC6;Q32MZ4-4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 NMPGLSAATLASLGGT(0.398)S(0.398)S(0.204)R 147.64 0.00022359 37124000 2007.1 1414.2 1625.1 1450.8 1417 1818.3 1681.8 1816.4 1633.3 1283.1 TRUE FALSE FALSE 1771.830781 1457.769826 1712.957822 1509.969895 1312.470733 1783.618957 1746.667589 2023.171634 1565.974683 1275.468064 1.389161227 1.142929303 1.343003302 1.183855509 1.029011051 1.398403462 1.369432633 1.586218966 1.227764714 1 10.31681106 -11.87834707 0.349374569 8.68E-11 1.321172383 0.103045438 0.164620815 14.15018994 0.531326851 9.916699055 0.051943282 1.32E-12 11.87834707 1.321172383 NDHLTSTTS(ph)SPGVIVPESSENK ddPTM_HeLa_CUDC101_4h_R1 1 NDHLTSTTSSPGVIVPESSENK 22 0 H7C608;E2QRF9;O75496 H7C608 GMNN Geminin 1 0 NDHLT(0.008)S(0.02)T(0.053)T(0.144)S(0.569)S(0.207)PGVIVPESSENK 81.799 0.00047814 0 1478.9 1276 1252.9 1006.3 1853.5 1498.4 1239.1 869.28 1781.4 1473.9 TRUE FALSE FALSE 1305.545584 1315.312048 1320.635564 1047.341264 1716.770998 1469.820517 1286.892502 968.2353214 1707.969938 1465.133177 0.891076391 0.897742313 0.901375782 0.714843729 1.171750817 1.003199258 0.878345069 0.660851407 1.165743814 1 10.51681609 -11.84687797 0.015574091 2.005494532 5.61E-06 0.173148314 0.143496062 6533.540826 11.27285345 850.9040231 617.493215 1.42E-12 11.84687797 -2.005488926 SQLDDHPES(ph)DDEENFIDANDDEDMEKFTDADKETEIVK ddPTM_HeLa_CUDC101_4h_R1 1 SQLDDHPESDDEENFIDANDDEDMEKFTDADKETEIVK 38 2 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 S(0.004)QLDDHPES(0.92)DDEENFIDANDDEDMEKFT(0.073)DADKET(0.002)EIVK 41.205 0.017907 149300000 3742.3 3202.7 3249.7 2770.1 3529.1 3365.6 3433.2 3391 3304.6 2355.9 TRUE FALSE FALSE 3303.633267 3301.371391 3425.388612 2883.076651 3268.765324 3301.406787 3565.619674 3777.017733 3168.382989 2341.887002 1.410671507 1.409705672 1.46266178 1.231091273 1.395782683 1.409720787 1.522541297 1.612809555 1.352918816 1 11.19345575 -11.84564636 0.218162384 1.49E-12 1.507396543 0.202567443 0.141647544 8.295826575 0.199131316 3.76136293 0.084610398 1.43E-12 11.84564636 1.507396543 PAPPQEES(ph)PSSEAK ddPTM_HeLa_CUDC101_4h_R1 1 PAPPQEESPSSEAK 14 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 PAPPQEES(0.934)PS(0.052)S(0.015)EAK 110.35 0.003491 43147000 6193.4 5574.8 5650.3 5585.2 4570.9 4549.9 4981.1 4592.5 6086.7 8113.7 TRUE FALSE FALSE 5467.419041 5746.55298 5955.772309 5812.988597 4233.713814 4463.118238 5173.222696 5115.291636 5835.80365 8065.439352 0.677882357 0.712491004 0.738431231 0.720728077 0.52492042 0.553363313 0.641406186 0.634223557 0.72355682 1 12.97753741 -11.84344538 0.198741244 1.807450642 0.566429007 0.279163354 0.104842525 7.3599692 0.161022203 2.474304353 0.072295972 1.43E-12 11.84344538 -1.241021635 ERPQT(ph)T(ph)RRPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ERPQTTRRPSK 11 3 Q76M96;Q76M96-2 Q76M96 CCDC80 Coiled-coil domain-containing protein 80 3 0 ERPQT(1)T(1)RRPS(1)K 69.864 0.0027967 0 2620.2 2385.5 2307.6 1942.4 2462 2305.7 1896.9 1996.6 2239.6 3099.9 TRUE FALSE FALSE 2313.064128 2458.994427 2432.355836 2021.619468 2280.383165 2261.722614 1970.064068 2223.884873 2147.28274 3081.461657 0.750638621 0.797996114 0.789351323 0.656058615 0.740032952 0.733977205 0.639327789 0.721698051 0.696839026 1 11.58939912 -11.81272465 0.200227989 1.620304066 0.66425622 0 0.104881179 5.95472443 0.132707247 1.551701721 0.045593671 1.54E-12 11.81272465 -0.956047846 SAGAAQK(ac)KPAATTAK ddPTM_HeLa_CUDC101_4h_R1 2 SAGAAQKKPAATTAK 15 2 Q6PL18;E5RHW7;E5RIP2 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 0 1 ; SAGAAQK(0.989)K(0.011)PAATTAK;SAGAAQK(0.982)K(0.018)PAATTAK 116.58 0.01233 41659000 8712.9 10335.4 13482.2 16332.1 16497.9 16957.1 16746.9 15823.5 5125.8 5082.1 FALSE TRUE FALSE 7691.58707 10653.82142 14211.08851 16998.19363 15280.88279 16633.67157 17392.83354 17624.78328 4914.512354 5051.871443 1.522522328 2.108886092 2.813034471 3.364732025 3.024796446 3.292576178 3.442849593 3.488763219 0.972810257 1 12.30260221 -6.936213494 0.923472719 1.150271227 3.3952188 0.975300446 0.1516143 0.056484282 0.095650846 0.035581017 0.05073714 1.16E-07 6.936213494 2.244947573 up EEKS(ph)VEYEGDLK ddPTM_HeLa_CUDC101_4h_R1 2 EEKSVEYEGDLK 12 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 EEKS(1)VEYEGDLK;EEKS(1)VEYEGDLK ; 134.24 0.0071464 126709200 6889.94 6219.67 6731.25 6776.99 6694.5 6937.88 6325.69 4710.8 7542.3 7114.76 TRUE FALSE FALSE 6082.311678 6411.290661 7095.161736 7053.384945 6200.660072 6805.551498 6569.673982 5247.05843 7231.403202 7072.441091 0.860001745 0.906517365 1.00321256 0.997305577 0.876735485 0.962263441 0.9289118 0.741902034 1.022476272 1 12.78799254 -11.80453935 0.011258963 1.963567739 4.08E-06 0.243154782 0.071767495 10166.20139 12.80055666 1251.237057 994.3986577 1.57E-12 11.80453935 -1.963563656 AIPGDQHPES(ph)PVHTEPMGIQGR ddPTM_HeLa_CUDC101_4h_R1 4 AIPGDQHPESPVHTEPMGIQGR 22 0 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR ;;; 146.45 2.99E-07 269528000 10156.2 8962.5 9676.4 8606.3 8414.4 9399.3 8663 7903 9001.5 10950.8 TRUE FALSE FALSE 8965.705632 9238.624002 10199.53545 8957.302114 7793.686476 9220.024013 8997.134812 8802.645575 8630.45436 10885.66415 0.823625045 0.848696402 0.936969514 0.822853065 0.715958748 0.846987734 0.826512254 0.808645706 0.792827542 1 13.41014181 -11.78629799 0.24909274 1.415498005 0.804443149 0 0.08270823 9.830783227 0.276406107 2.092897467 0.034148288 1.64E-12 11.78629799 -0.611054856 RPNEDS(ph)DEDEEK ddPTM_HeLa_CUDC101_4h_R1 2 RPNEDSDEDEEK 12 1 Q12996;H0YE74;E9PLP8 Q12996 CSTF3 Cleavage stimulation factor subunit 3 1 0 RPNEDS(1)DEDEEK;RPNEDS(1)DEDEEK ; 184.48 2.43E-10 42491000 6828.7 3539 6374 7065.9 4126.8 3721.9 4313.8 2001.22 7067.7 9406.2 TRUE FALSE FALSE 6028.250138 3648.032395 6718.59772 7354.077943 3822.374186 3650.910959 4480.184711 2229.030796 6776.366415 9350.251504 0.644715293 0.390153398 0.718547273 0.786511244 0.408799077 0.390461257 0.479151252 0.238392603 0.724725577 1 13.19078946 -11.77457105 0.090998281 2.285802802 6.22E-12 0.500073393 0.156750085 38.00530777 0.388452164 11.34691397 1.925125763 1.68E-12 11.77457105 -2.285802801 NTEESSS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 2 NTEESSSPVR 10 0 Q5T200-2;Q5T200;Q5T9K0 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 NTEESS(0.002)S(0.998)PVR;NTEES(0.01)S(0.09)S(0.901)PVR ; 166.45 1.51E-05 20299000 13317.6 7169.8 12105.4 12612.9 9277.6 9050.9 8770 4238.6 12146.9 16885 TRUE FALSE FALSE 11756.53112 7390.69304 12759.85454 13127.30858 8593.209932 8878.269162 9108.261838 4721.105091 11646.19964 16784.56727 0.700436951 0.440326695 0.760213495 0.78210587 0.511970895 0.528954308 0.542656935 0.281276545 0.693863563 1 14.03484772 -11.77356853 0.077365771 2.235611539 3.87E-14 0.386464471 0.151691996 51.88294022 0.451127706 13.53010548 2.949178499 1.68E-12 11.77356853 -2.235611539 T(ph)PSSSPPITPPAS(ph)ETK ddPTM_HeLa_CUDC101_4h_R1 1 TPSSSPPITPPASETK 16 0 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 2 0 T(0.867)PS(0.039)S(0.065)S(0.029)PPIT(0.13)PPAS(0.866)ET(0.004)K 130.95 0.0017532 32182000 4002.1 4158.3 3518.3 2918.6 3267.8 3032.8 3002 3086.8 3962.7 4682.2 TRUE FALSE FALSE 3532.979905 4286.412294 3708.50994 3037.633123 3026.740904 2974.954393 3117.788146 3438.188835 3799.355829 4654.350066 0.759070516 0.920947551 0.79678363 0.652643888 0.650303665 0.639177189 0.669865416 0.738704392 0.816302121 1 12.18436401 -11.76534079 0.136677527 1.614710072 0.577732554 0.431954417 0.08743126 18.0488156 0.27787037 3.442016712 0.268550412 1.72E-12 11.76534079 -1.036977519 SSS(ph)PAGETEGDREPQAR ddPTM_HeLa_CUDC101_4h_R1 2 SSSPAGETEGDREPQAR 17 1 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.008)S(0.008)S(0.984)PAGETEGDREPQAR;S(0.083)S(0.083)S(0.831)PAGET(0.003)EGDREPQAR ; 108.34 0.00069248 147573000 3883.1 3403.3 3575.6 3433.7 3163.3 2844 2874.3 3269.8 3746.2 4607.1 TRUE FALSE FALSE 3427.928904 3508.151639 3768.907752 3573.741128 2929.949661 2789.755438 2985.162714 3642.020815 3591.78005 4579.696764 0.74850565 0.766022691 0.82296011 0.780344488 0.639769359 0.609157239 0.651825408 0.795253704 0.784283378 1 12.16103636 -11.70019549 0.192597218 1.59567051 0.650935651 0.234225153 0.092977223 9.991913112 0.222709818 2.448925678 0.087585746 1.99E-12 11.70019549 -0.944734859 AS(ph)PPGDLQNPK ddPTM_HeLa_CUDC101_4h_R1 4 ASPPGDLQNPK 11 0 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 AS(1)PPGDLQNPK;AS(1)PPGDLQNPK;AS(1)PPGDLQNPK;AS(1)PPGDLQNPK ;;; 142.76 0.0012651 385846000 17786 14364.8 15185.4 14496.4 12887.9 14233.4 12153.9 11033.6 15047.7 19335.8 TRUE FALSE FALSE 15701.15204 14807.36246 16006.36866 15087.62585 11937.18529 13961.92161 12622.67999 12289.62042 14427.42744 19220.7898 0.816883812 0.770382623 0.832763316 0.784963886 0.62105592 0.726396873 0.656720152 0.639392062 0.750615744 1 14.23038 -11.6966336 0.04804044 2.133349025 9.69E-15 0.306672525 0.088355258 66.42316218 0.365529786 12.86472316 4.996093148 2.01E-12 11.6966336 -2.133349025 MTEEEVEMLVAGHEDS(ph)NGCINYEELVR ddPTM_HeLa_CUDC101_4h_R1 5 MTEEEVEMLVAGHEDSNGCINYEELVR 27 0 P60660-2;F8VZU9;G8JLA2;F8W180;F8VXL3 P60660-2 MYL6 Myosin light polypeptide 6 1 0 MT(0.018)EEEVEMLVAGHEDS(0.977)NGCINY(0.006)EELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(0.999)NGCINY(0.001)EELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR ;;;; 143.03 1.01E-11 60024400 6168.62 5298.26 5254.07 4547.26 6454.45 6501.24 6030.02 5023.95 5436.63 3880.29 TRUE FALSE FALSE 5445.543715 5461.493111 5538.120917 4732.716918 5978.318083 6377.239679 6262.599891 5595.85616 5212.52981 3857.209863 1.411783105 1.415918061 1.435784185 1.226979368 1.549907393 1.653329714 1.623608804 1.450752321 1.351373142 1 11.91334193 -11.68765309 0.165724631 9.38E-11 1.643982196 0.32588012 0.149550652 11.37769196 0.218124314 4.146350069 0.218059018 2.05E-12 11.68765309 1.643982196 GTDTQTPAVLS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 GTDTQTPAVLSPSK 14 0 P46087;P46087-4;P46087-2 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 GTDTQT(0.001)PAVLS(0.99)PS(0.009)K 200.81 1.07E-16 383150000 4818.9 4079.6 4523.8 4711.4 4048.5 4081.3 3340.7 2251.6 4710.1 5976.9 TRUE FALSE FALSE 4254.035847 4205.28764 4768.370312 4903.551256 3749.850221 4003.456002 3469.551918 2507.913043 4515.947684 5941.349133 0.716005027 0.707800122 0.802573659 0.825326226 0.631144566 0.673829447 0.583967015 0.42211171 0.760087917 1 12.53657485 -11.66811542 0.0572807 2.109820651 3.13E-16 0.512207378 0.102351046 84.82301401 0.560360761 17.71070312 5.807817411 2.15E-12 11.66811542 -2.109820651 ANASNS(ph)PSSLR ddPTM_HeLa_CUDC101_4h_R1 1 ANASNSPSSLR 11 0 Q5T5X7 Q5T5X7 BEND3 BEN domain-containing protein 3 1 0 ANAS(0.006)NS(0.766)PS(0.227)S(0.001)LR 129.76 0.0021311 14914000 2308.5 1840.2 1842.1 1713.7 1881.1 2032.1 2194.5 2196.6 2070.9 1483.5 TRUE FALSE FALSE 2037.901129 1896.894381 1941.689498 1783.592093 1742.335001 1993.341078 2279.1426 2446.652065 1985.536625 1474.676076 1.38193137 1.286312575 1.316688817 1.209480592 1.181503538 1.351714529 1.545520835 1.659111519 1.346422213 1 10.52618237 -11.65811772 0.06540003 1.76E-36 1.946377097 0.29213315 0.147108043 104.3238964 0.788877143 21.5919779 6.100430683 2.20E-12 11.65811772 1.946377097 AEEDEILNRS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 AEEDEILNRSPR 12 1 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR ;;; 150.09 0.00035159 2759850000 31174.5 28480.3 26459.3 29070.4 24494.4 23874.9 22562.1 26707.2 23708.9 33883.1 TRUE FALSE FALSE 27520.27237 29357.74429 27889.76979 30256.01656 22687.49691 23419.52606 23432.32775 29747.43969 22731.60911 33681.56181 0.817072335 0.871626573 0.828042653 0.898296128 0.673588031 0.695321856 0.695701936 0.883196565 0.674897715 1 15.03967142 -11.63530228 0.15547502 1.439303402 0.702927466 0 0.125739222 19.22227003 0.350866929 2.940297538 0.186284628 2.32E-12 11.63530228 -0.736375935 LGLPLLTDCAQPS(ph)RPHGSPSR ddPTM_HeLa_CUDC101_4h_R1 1 LGLPLLTDCAQPSRPHGSPSR 21 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 1 0 LGLPLLTDCAQPS(0.462)RPHGS(0.462)PS(0.075)R 91.14 0.00028641 24432000 2663.2 2323.1 2016.1 2038.4 3013.9 2400.7 2467.5 2540.6 2181.6 1814.2 TRUE FALSE FALSE 2351.023733 2394.671957 2125.096464 2121.534763 2791.570602 2354.910647 2562.672302 2829.811635 2091.673525 1803.409058 1.303655276 1.327858451 1.178377393 1.176402411 1.547940879 1.305810591 1.421015543 1.569145737 1.159844194 1 10.81651096 -11.62094383 0.071177054 3.69E-12 1.882580286 0.576293905 0.110673738 64.38323799 0.534850487 13.5849034 3.491663886 2.39E-12 11.62094383 1.882580286 RPTPNDDTLDEGVGLVHSNIATEHIPS(ph)PAKK ddPTM_HeLa_CUDC101_4h_R1 2 RPTPNDDTLDEGVGLVHSNIATEHIPSPAKK 31 2 Q01581 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 1 0 RPTPNDDTLDEGVGLVHS(0.016)NIAT(0.066)EHIPS(0.918)PAKK;RPTPNDDTLDEGVGLVHS(0.027)NIAT(0.159)EHIPS(0.814)PAKK ; 94.837 1.83E-09 167534000 4657 3668.6 3626.4 3728.4 4460.3 3959 3055.6 3266.6 4257.4 5248.2 TRUE FALSE FALSE 4111.11352 3781.625218 3822.454153 3880.460268 4131.272555 3883.488671 3173.455516 3638.45654 4081.90817 5216.983473 0.788025023 0.724868161 0.732694319 0.743813027 0.79188914 0.744393516 0.608293189 0.697425353 0.782426893 1 12.34900015 -11.59036419 0.166704114 1.563207345 0.634951768 0.250436481 0.081815414 7.882957296 0.156910028 1.626522807 0.090377039 2.57E-12 11.59036419 -0.928255577 RKETMS(ph)S(ph)T(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 RKETMSSTR 9 2 J3QRB4;E7EPS8;P28827;P28827-2 J3QRB4 PTPRM Protein-tyrosine-phosphatase;Receptor-type tyrosine-protein phosphatase mu 3 0 RKETMS(1)S(1)T(1)R 60.118 0.034097 6309900 2040.5 1731.1 1742 1798.7 1983 1576.4 1690.4 1559.5 1735.6 2238.8 TRUE FALSE FALSE 1801.315683 1784.433139 1836.177789 1872.058761 1836.718041 1546.332796 1755.599294 1737.027176 1664.057833 2225.483518 0.80940419 0.801818178 0.825069148 0.841191923 0.825311904 0.694830038 0.788861962 0.780516756 0.747728671 1 11.1199031 -11.53362354 0.226553593 1.419155637 0.759526412 0 0.088469638 5.820363411 0.164034433 1.173965611 0.031865389 2.93E-12 11.53362354 -0.659629226 LTPSPDIIVLSDNEASS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LTPSPDIIVLSDNEAS(0.1)S(0.9)PR 144.33 3.50E-05 5524600 1105.5 1212.3 822.68 752.22 1027 1478.7 751.48 811.26 1208.5 1056.7 TRUE FALSE FALSE 975.9149658 1249.649526 867.1565693 782.898783 951.2402561 1450.496261 780.4648353 903.6105592 1158.685118 1050.414701 0.929075883 1.18967254 0.82553735 0.74532352 0.905585437 1.380879627 0.74300639 0.860241729 1.103073973 1 10.0367433 -11.52885168 0.008423947 1.968401719 0.02651001 0.032416596 0.190840273 55569.90439 55.76977531 6965.100737 5927.86501 2.96E-12 11.52885168 -1.94189171 RQEELENGTAWSLSSESS(ph)DDSSSPQLSGTAR ddPTM_HeLa_CUDC101_4h_R1 1 RQEELENGTAWSLSSESSDDSSSPQLSGTAR 31 1 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4;H3BMG9;H3BSV5 A0A0A0MTL6 FAM65A Protein FAM65A 1 0 RQEELENGTAWSLS(0.007)S(0.031)ES(0.136)S(0.395)DDS(0.214)S(0.176)S(0.04)PQLS(0.001)GTAR 76.853 6.66E-06 7593400 644.19 401.1 487.36 377.77 531.26 612.84 575.54 488.95 427.26 378.82 TRUE FALSE FALSE 568.6790247 413.4574156 513.7081558 393.1770935 492.0700082 601.1510981 597.7387706 544.6100916 409.648162 376.5667618 1.51016787 1.097965773 1.364188792 1.044109925 1.306727141 1.596399786 1.587338106 1.446251095 1.087850027 1 8.556761854 -11.5217206 0.381187306 2.55E-12 1.398767506 0.34649542 0.177346465 10.7968229 0.550247626 8.396260481 0.058341724 3.01E-12 11.5217206 1.398767506 AEVVETTQVYTEEETRR ddPTM_HeLa_CUDC101_4h_R1 2 AEVVETTQVYTEEETRR 17 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 125.39 0.00029772 23709000 2271.2 3028.1 2749.6 3336.4 4442.4 4231.6 3859.1 2871.2 3912.9 1847.76 FALSE FALSE TRUE 2004.973379 3121.392172 2898.251693 3472.472813 4114.693003 4150.88928 4007.94678 3198.045802 3751.608606 1836.769441 1.091575967 1.699392478 1.577907182 1.890532766 2.240179366 2.259885856 2.182063077 1.741125331 2.042503823 1 10.84295483 -6.83179658 0.956260195 1.01697003 2.117746456 0.251389161 0.368655458 0.116054167 0.211168449 0.035214508 0.053072373 1.47E-07 6.83179658 1.100776426 APAPAPPPSGSTSCGDRDS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 APAPAPPPSGSTSCGDRDSR 20 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 APAPAPPPS(0.035)GS(0.035)T(0.035)S(0.035)CGDRDS(0.858)R 68.569 0.0053662 3360200 2195.3 1509.3 2236.8 2130.1 1822.6 1796.1 1546.6 792.32 2753.5 2773.6 TRUE FALSE FALSE 1937.970262 1555.799744 2357.728174 2216.974685 1688.150429 1761.842385 1606.25288 882.5145061 2639.999565 2757.102504 0.702901056 0.564287959 0.855147087 0.804095851 0.612291501 0.639019544 0.582587291 0.320087666 0.95752681 1 11.42893719 -11.50822873 0.06400245 2.1072237 3.71E-16 0.66844538 0.112103632 82.60771144 0.634449359 18.57396192 5.624288042 3.10E-12 11.50822873 -2.1072237 AETPTES(ph)VS(ph)EPEVATKQELQEEEEQTKPPR ddPTM_HeLa_CUDC101_4h_R1 1 AETPTESVSEPEVATKQELQEEEEQTKPPR 30 2 M0R0Q7;P18858-2;P18858;P18858-3;B4E135 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 2 0 AET(0.227)PT(0.167)ES(0.589)VS(0.763)EPEVAT(0.25)KQELQEEEEQT(0.004)KPPR 42.73 0.02411 5972600 811.18 603.4 372.72 575.03 827.46 592.96 758.49 667.36 610.34 464.29 TRUE FALSE FALSE 716.0947101 621.9900388 392.8703706 598.4822089 766.4199243 581.6502759 787.7452134 743.3295648 585.1815269 461.5283824 1.551572422 1.347674515 0.851237726 1.296739771 1.660612767 1.260269786 1.706818569 1.610582562 1.267920997 1 8.850275561 -11.50117643 0.351720924 1.95E-23 1.445403968 0.129127088 0.250569362 13.41517161 0.631103198 9.762581217 0.086572159 3.15E-12 11.50117643 1.445403968 SYS(ph)PAHNR ddPTM_HeLa_CUDC101_4h_R1 1 SYSPAHNR 8 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.001)YS(0.999)PAHNR 110.53 0.007283 2893800 2441.4 837.21 2373.8 2015.5 1402.8 1249.5 1584.9 823.77 2596 3461.1 TRUE FALSE FALSE 2155.222793 863.0034478 2502.134808 2097.700802 1299.318239 1225.667869 1646.030124 917.544647 2488.991781 3440.513223 0.626424796 0.250835672 0.727256268 0.609705781 0.377652447 0.35624565 0.478425751 0.266688307 0.723436191 1 11.74840807 -11.48209062 0.136443944 2.126155698 0.18538512 0.484322365 0.162939591 15.87812308 0.265326726 5.656795659 0.523804257 3.30E-12 11.48209062 -1.940770578 (ac)NY(ph)S(ph)T(ph)HLFQMPLFLK ddPTM_HeLa_CUDC101_4h_R1 1 NYSTHLFQMPLFLK 14 0 Q86YA3-7 Q86YA3-7 3 0 NY(1)S(1)T(1)HLFQMPLFLK 40.025 0.0032466 0 1518.7 1345.1 1396.4 1311.1 1183.3 1412.5 1269.7 1134.2 1439 1711.6 TRUE FALSE FALSE 1340.680288 1386.540937 1471.893608 1364.572325 1096.010316 1385.558916 1318.672754 1263.312743 1379.683811 1701.419327 0.787977583 0.81493193 0.865097501 0.802019998 0.644174131 0.814354753 0.775042774 0.742505227 0.810901692 1 10.73252303 -11.46744346 0.234451453 1.436931393 0.743926299 0.125509432 0.079799685 7.221062011 0.217044296 1.579843424 0.041831192 3.41E-12 11.46744346 -0.693005094 QPSVET(ph)LDSPTGSHVEWCK ddPTM_HeLa_CUDC101_4h_R1 1 QPSVETLDSPTGSHVEWCK 19 0 E9PPP8;Q8NEC6;F8WA39;Q13613-2;Q13613 E9PPP8 MTMR1 Myotubularin-related protein 1 1 0 QPS(0.277)VET(0.444)LDS(0.277)PT(0.003)GSHVEWCK 82.761 0.0077298 13017000 1183.4 993.22 934.87 974.52 1113.9 1004.8 1104.3 1143.2 1136.4 694.55 TRUE FALSE FALSE 1044.683646 1023.819931 985.4119 1014.265138 1031.729816 985.6351141 1146.893221 1273.337267 1089.557111 690.4187857 1.513115905 1.482896978 1.427266929 1.469057851 1.494353626 1.427590231 1.661155873 1.844296959 1.578110465 1 9.431327909 -11.45586483 0.199642689 1.64E-12 1.66595163 0 0.207153028 7.732618355 0.195409043 3.422489466 0.136807028 3.50E-12 11.45586483 1.66595163 AFEDDDITHVEGSVDPIR ddPTM_HeLa_CUDC101_4h_R1 2 AFEDDDITHVEGSVDPIR 18 0 J3KQ32;Q9NTK5;Q9NTK5-3 J3KQ32;Q9NTK5-3 OLA1 Obg-like ATPase 1 0 0 ; ; 111.7 0.00038173 9057400 7620.3 6126 5756.8 5482.6 5251.8 6210.4 5194.4 4502.4 5693.7 5855.1 FALSE FALSE TRUE 6727.059986 6314.734799 6068.030021 5706.204126 4864.385177 6091.946967 5394.749748 5014.935017 5459.003276 5820.273605 1.155797896 1.084954974 1.04256783 0.980401355 0.835765723 1.046677078 0.926889372 0.861632177 0.937928978 1 12.50687126 -6.21867468 2.738818651 1.075709962 0.926379955 0.338891752 0.076946883 0.192923116 2.864404169 0.011873875 0.020288714 6.04E-07 6.21867468 -0.149330008 AFEVMDEFDGR ddPTM_HeLa_CUDC101_4h_R1 2 AFEVMDEFDGR 11 0 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IU26;B1AN86;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 0 0 ; ; 121.83 0.021301 5937400 6536.4 5810.5 5269.3 5193 6163 6051.3 5533.7 5483.1 6668.9 6338.2 FALSE FALSE TRUE 5770.213101 5989.514618 5554.174297 5404.792986 5708.367768 5935.881535 5747.136663 6107.273941 6394.005119 6300.500105 0.915834141 0.950641143 0.881544989 0.857835552 0.906018201 0.94212863 0.912171505 0.969331615 1.014840888 1 12.62125063 -9.090460293 0.66960303 1.005903378 0.913853741 0.567006968 0.031291618 0.572630001 0.425072598 0.029792335 0.00700551 8.12E-10 9.090460293 -0.092049636 AFFSEVER ddPTM_HeLa_CUDC101_4h_R1 1 AFFSEVER 8 0 Q9UQ80;Q9UQ80-2;F8VR77 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 0 143.89 0.02286 32899000 4136.6 3696.9 3072.1 3462.9 3148.5 3575 3154.3 3253.6 3046.6 2623.5 FALSE FALSE TRUE 3651.714019 3810.797107 3238.187019 3604.13203 2916.241428 3506.812831 3275.962408 3623.976672 2921.017858 2607.895305 1.400253304 1.46125387 1.241685973 1.382007944 1.118235622 1.344690803 1.256170982 1.389617392 1.120067149 1 11.34867024 -9.328936008 1.034119734 0.998545879 1.323992664 0.520671494 0.099214955 0.273547552 0.520151081 0.065236274 0.016920084 4.69E-10 9.328936008 0.325446785 AFGFSHLEALLDDSK ddPTM_HeLa_CUDC101_4h_R1 2 AFGFSHLEALLDDSK 15 0 J3KR44;F5H6Q1;F5GYJ8;Q96FW1;F5GYN4 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 0 ; ; 134.4 0.00053341 12459200 8032.5 6350.4 6008.3 5862.7 6508.8 6432.5 5805 5533.3 6627.5 7823.6 FALSE FALSE TRUE 7090.942526 6546.048297 6333.126872 6101.806247 6028.658791 6309.81078 6028.900795 6163.188506 6354.311645 7777.064879 0.911776182 0.841711931 0.81433381 0.78458986 0.775184325 0.811335752 0.775215443 0.792482588 0.817057816 1 12.92501006 -7.468279182 0.650546515 0.986643494 0.78005489 0.339327515 0.055071276 0.085702051 0.080069472 0.005670947 0.005798386 3.40E-08 7.468279182 -0.206588604 AFGFSHLEALLDDSKELQR ddPTM_HeLa_CUDC101_4h_R1 2 AFGFSHLEALLDDSKELQR 19 1 J3KR44;F5H6Q1;F5GYJ8;Q96FW1;F5GYN4 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 0 ; ; 102.64 0.00057385 11714900 8529.3 7844.7 8206.2 8150.1 9792.5 9078.2 8932.1 8704.6 8851.1 8331.1 FALSE FALSE TRUE 7529.508384 8086.385909 8649.851994 8482.496306 9070.126784 8905.04846 9276.614089 9695.496479 8486.253912 8281.546247 0.909191129 0.976434312 1.044473065 1.024264799 1.095221413 1.07528814 1.120154837 1.170735052 1.024718532 1 13.01568444 -5.868824328 0.808160933 0.957493849 1.141053255 0.713949073 0.038157528 0.256118588 0.312171587 0.007791757 0.025744695 1.35E-06 5.868824328 0.183559406 AFGGQSLK(ac)FGK ddPTM_HeLa_CUDC101_4h_R1 1 AFGGQSLKFGK 11 1 D6RFM5;P31040-2;P31040;A0A494C1T6 D6RFM5 SDHA "Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial" 0 1 AFGGQSLK(1)FGK 115.18 0.0067464 0 147.97 0 0 150.7 0 147.87 0 0 0 0 FALSE TRUE FALSE 130.6251809 0 0 156.8461974 0 145.0496261 0 0 0 0 0 AS(ph)DPGLPAEEPKEK ddPTM_HeLa_CUDC101_4h_R1 2 ASDPGLPAEEPKEK 14 1 P27708;F8VPD4 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 AS(1)DPGLPAEEPKEK;AS(1)DPGLPAEEPKEK ; 97.214 0.0051772 484040000 16630.2 13099.3 14322.1 13945.5 15468.4 15574.2 15472.8 11979.8 11540.1 12967 TRUE FALSE FALSE 14680.83317 13502.87391 15096.39605 14514.25777 14327.32695 15277.14808 16069.59108 13343.53201 11064.41219 12889.87171 1.138943311 1.047556889 1.171182801 1.126020344 1.111518196 1.185205596 1.246683555 1.035195098 0.858380319 1 13.65395028 -11.4418416 0.244025722 0.728616633 1.158736411 0.519291387 0.073004325 11.44064998 0.363547245 1.619449374 0.039719304 3.62E-12 11.4418416 0.430119779 RGPGLTSS(ph)PPLLPPS(ph)LQVNFHS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 RGPGLTSSPPLLPPSLQVNFHSPR 24 1 P42892-2 P42892-2 3 0 RGPGLT(0.024)S(0.071)S(0.906)PPLLPPS(0.999)LQVNFHS(1)PR 54.008 0.0085769 65055000 1857.8 1411.1 1479.8 1706 2153.5 1683.2 1542.1 1930.4 1649.9 1201.5 TRUE FALSE FALSE 1640.0315 1454.574318 1559.802464 1775.578054 1994.640595 1651.095764 1601.579314 2150.148933 1581.890424 1194.353425 1.373154266 1.217875956 1.305980652 1.48664375 1.670058924 1.382418077 1.340959284 1.800261873 1.324474306 1 10.2220141 -11.43962073 0.102076269 8.68E-11 1.839178735 0.388967162 0.166172761 31.93554413 0.400588324 8.500974978 1.376516809 3.63E-12 11.43962073 1.839178735 LLSDS(ph)LPPSTGTFQEAQSR ddPTM_HeLa_CUDC101_4h_R1 1 LLSDSLPPSTGTFQEAQSR 19 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 LLS(0.172)DS(0.828)LPPSTGTFQEAQSR 162.82 1.15E-05 14038000 1076.3 910.11 833.29 843.18 959.9 948.63 947.94 955.19 890.36 633.44 TRUE FALSE FALSE 950.1377456 938.1494104 878.340178 877.5685249 889.0900894 930.5364633 984.5023633 1063.924969 853.6589839 629.6722707 1.50894011 1.489901103 1.394916401 1.393690918 1.411988634 1.47781077 1.563515513 1.689648756 1.355719513 1 9.298457326 -11.41771428 0.282567486 3.72E-11 1.537041725 0.309782837 0.141630461 4.527359225 0.172194765 2.689333601 0.046639208 3.82E-12 11.41771428 1.537041725 AFHNEAQVNPER ddPTM_HeLa_CUDC101_4h_R1 2 AFHNEAQVNPER 12 0 P17987;F5H282;E7EQR6 P17987 TCP1 T-complex protein 1 subunit alpha 0 0 ; ; 198.32 2.76E-16 33473000 6166.7 5522.3 5566 4839.9 4507.5 4855.7 4379 4599.6 5316 5627.2 FALSE FALSE TRUE 5443.848774 5692.435517 5866.914796 5037.292042 4174.990705 4763.085613 4547.899497 5123.199872 5096.87223 5593.729164 0.973205641 1.017645894 1.048837837 0.900524837 0.746369834 0.85150451 0.813035341 0.915882718 0.911176083 1 12.44959469 -6.02458187 6.223111205 0.993423751 0.830457524 0.682818643 0.0510212 0.060864596 8.446994097 0.006330424 0.010871673 9.45E-07 6.02458187 -0.162966227 ASVS(ph)PMDEPVPDSESPIEK ddPTM_HeLa_CUDC101_4h_R1 7 ASVSPMDEPVPDSESPIEK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AS(0.014)VS(0.986)PMDEPVPDSESPIEK;AS(0.053)VS(0.947)PMDEPVPDSESPIEK;AS(0.015)VS(0.985)PMDEPVPDSESPIEK;AS(0.017)VS(0.983)PMDEPVPDSESPIEK;AS(0.002)VS(0.998)PMDEPVPDSESPIEK;AS(0.021)VS(0.979)PMDEPVPDSESPIEK;AS(0.174)VS(0.826)PMDEPVPDSESPIEK ;;;;;; 251.04 1.25E-56 421154200 29988.36 26732.67 26124.72 25110.36 29365.79 26816.88 26413.98 27431.29 29392.24 28942.72 TRUE FALSE FALSE 26473.1699 27556.27188 27537.10139 26134.46902 27199.53418 26305.39269 27432.77606 30553.95717 28180.67943 28770.56741 0.920147647 0.957793827 0.957127504 0.908375168 0.94539443 0.91431609 0.953501391 1.061986604 0.979496825 1 14.81230605 -11.40286498 9.845536 0.959481753 0.957728923 0 0.043627453 0 0 0 0.006084986 3.95E-12 11.40286498 -0.00175283 S(ph)SENLSLDDCNK ddPTM_HeLa_CUDC101_4h_R1 2 SSENLSLDDCNK 12 0 Q96T17;Q96T17-2;Q96T17-5;Q96T17-4 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 S(0.991)S(0.009)ENLSLDDCNK;S(0.999)S(0.001)ENLSLDDCNK ; 266.85 3.29E-70 27362000 7064.4 5719.8 5810.3 5471.4 6301.7 6573.9 6112.9 6483.7 6447 4105 TRUE FALSE FALSE 6236.321741 5896.020258 6124.422393 5694.547341 5836.836146 6448.51381 6348.676601 7221.7782 6181.251931 4080.583277 1.528291746 1.444896442 1.500869355 1.395522883 1.430392605 1.580292172 1.555825765 1.769790667 1.514796173 1 11.99455967 -11.39261677 0.250960121 2.40E-14 1.596188214 0 0.186778138 4.939787244 0.165488437 2.663549042 0.063996739 4.05E-12 11.39261677 1.596188214 TPGPPGLTTTPAPPDK(ac)LGGK ddPTM_HeLa_CUDC101_4h_R1 2 TPGPPGLTTTPAPPDKLGGK 20 1 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 0 1 ; TPGPPGLTTTPAPPDK(1)LGGK;TPGPPGLTTTPAPPDK(1)LGGK 222.45 2.08E-36 1605830 301.89 491.449 813.35 870.21 922.39 905.63 1037.69 778.15 50.727 197.42 FALSE TRUE FALSE 266.5029118 506.5899612 857.3221612 905.7009252 854.3471274 888.3566166 1077.714051 866.7314506 48.63601159 196.2457371 1.358006119 2.581406194 4.368615462 4.615136811 4.353455724 4.526756249 5.491655855 4.416561927 0.247832194 1 7.616517505 -6.932367159 1.751447546 1.137269522 4.726405448 0.943185137 0.415794648 0.041054794 0.251935527 0.054881819 0.074105933 1.17E-07 6.932367159 3.589135925 up PDPAK(ac)SAPAPK(ac)K(ac)GSK ddPTM_HeLa_CUDC101_4h_R1 3 PDPAKSAPAPKKGSK 15 3 Q5QNW6;Q5QNW6-2;Q93079 Q5QNW6;Q93079 HIST2H2BF;HIST1H2BH Histone H2B type 2-F;Histone H2B type 1-H 0 3 ;; PDPAK(1)SAPAPK(1)K(1)GSK;PDPAK(1)SAPAPK(1)K(1)GSK;PDPAK(1)SAPAPK(1)K(1)GSK 196.18 1.18E-14 38962300 2692.01 5134.2 8988.3 12469 11059.5 10904 11471.3 9141.2 993.95 1021.02 FALSE TRUE FALSE 2376.456669 5292.378616 9474.234686 12977.53972 10243.66272 10696.02437 11913.75188 10181.79726 952.9789603 1014.946928 2.34145905 5.214438777 9.334709459 12.78642199 10.09280627 10.53850608 11.73830036 10.03185189 0.938944623 1 9.987188574 -6.911211885 1.774210593 1.559555042 11.0554755 0.961642883 0.850710188 0.042782592 0.270631793 0.15180235 0.20662284 1.23E-07 6.911211885 9.495920462 up AFNQGK(ac)IFK ddPTM_HeLa_CUDC101_4h_R1 1 AFNQGKIFK 9 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 1 AFNQGK(1)IFK 180.93 0.00050536 5253000 2176.9 1459.3 945.86 1249.8 818.39 1080.1 1009.2 1183 811.64 602.36 FALSE TRUE FALSE 1921.727082 1504.259303 996.9960527 1300.772246 758.0190002 1059.498892 1048.125182 1317.667938 778.1838557 598.7771359 3.20941961 2.512219009 1.665053645 2.172381289 1.265945132 1.76943779 1.750442893 2.200598285 1.299621861 1 9.225875323 -6.713762378 24.99457268 2.107656959 1.792262851 0.013925589 0.621616256 416.9494929 218583.5703 0.13677391 0.193427259 1.93E-07 6.713762378 -0.315394108 SHS(ph)PSASQSGSQLR ddPTM_HeLa_CUDC101_4h_R1 6 SHSPSASQSGSQLR 14 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 S(0.071)HS(0.894)PS(0.035)ASQSGSQLR;S(0.062)HS(0.936)PS(0.002)ASQSGSQLR;S(0.024)HS(0.928)PS(0.048)ASQSGSQLR;S(0.033)HS(0.965)PS(0.001)ASQSGSQLR;S(0.108)HS(0.884)PS(0.008)ASQSGSQLR;S(0.295)HS(0.682)PS(0.023)ASQSGSQLR ;;;;; 156.2 7.20E-05 100170200 7821.96 3540.34 3142.4 3604.98 8321.83 5862.46 5241.89 4689.19 6575.38 5459.89 TRUE FALSE FALSE 6905.081706 3649.413679 3312.287649 3752.006666 7707.94518 5750.643343 5444.071453 5222.988435 6304.340053 5427.414331 1.272259917 0.672403737 0.610288334 0.691306474 1.420187351 1.05955488 1.003069071 0.96233457 1.161573388 1 12.40604933 -11.38364596 12.56085094 0.80482717 1.04085815 0 0.257867778 0 0 0 0.037036344 4.13E-12 11.38364596 0.23603098 PEPAK(ac)SAPAPK(ac)K(ac)GSK ddPTM_HeLa_CUDC101_4h_R1 2 PEPAKSAPAPKKGSK 15 3 O60814;P57053;P62807;Q16778 O60814;P62807;Q16778 HIST1H2BK;H2BFS;HIST1H2BC;HIST2H2BE Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E 0 3 ; PEPAK(1)SAPAPK(1)K(1)GSK;PEPAK(1)SAPAPK(1)K(1)GSK 177.39 4.01E-10 810280000 10556.6 24183 39859 58565 54079 48527 53938 42446 0 3995.5 FALSE TRUE FALSE 9319.171351 24928.04957 42013.89811 60953.53384 50089.69991 47601.42833 56018.40673 47277.88107 0 3971.734588 2.346373138 6.27636339 10.57822399 15.34682957 12.61154259 11.98504766 14.10426741 11.9035852 0 1 11.9555535 -6.905447864 1.714846385 1.544296374 13.18323062 0.954881648 1.152550435 0.043493475 0.256854127 0.185930196 0.254110092 1.24E-07 6.905447864 11.63893425 up PAEKPAETPVATS(ph)PTATDSTSGDSSR ddPTM_HeLa_CUDC101_4h_R1 1 PAEKPAETPVATSPTATDSTSGDSSR 26 1 P54727;P54727-2;H0Y579 P54727 RAD23B UV excision repair protein RAD23 homolog B 1 0 PAEKPAETPVAT(0.255)S(0.589)PT(0.137)AT(0.016)DS(0.001)T(0.001)S(0.001)GDSSR 103.92 6.26E-07 15579000 3826.6 3504.1 2946.5 3347.6 2765.3 2575 2517.6 2603.2 3503.3 4573.2 TRUE FALSE FALSE 3378.051749 3612.057168 3105.796703 3484.129598 2561.309328 2525.886165 2614.704675 2899.537766 3358.892491 4545.998403 0.743082476 0.794557509 0.683193531 0.766416811 0.56342064 0.555628476 0.575166211 0.637821994 0.738867944 1 12.15038146 -11.35755613 0.105886507 1.766241281 0.369977647 0.419734808 0.09802945 14.90782671 0.198675266 3.109707933 0.491945826 4.39E-12 11.35755613 -1.396263634 AQSGSDSS(ph)PEPK ddPTM_HeLa_CUDC101_4h_R1 1 AQSGSDSSPEPK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQS(0.002)GS(0.03)DS(0.231)S(0.737)PEPK 94.781 0.015961 2321200 2000.2 789.07 2157.5 1641.5 1087.6 915.29 972.93 277.65 2480 3367.3 TRUE FALSE FALSE 1765.739588 813.3803114 2274.140976 1708.447465 1007.369915 897.8323682 1010.456236 309.2565537 2377.77335 3347.27115 0.527516149 0.242998035 0.679401481 0.510400081 0.300952588 0.268228156 0.301874629 0.092390649 0.710361738 1 11.70876971 -11.33866819 0.130414011 2.279195976 4.26E-13 0.642321686 0.155806699 13.10055381 0.218023858 5.277732717 0.580591153 4.58E-12 11.33866819 -2.279195976 RLT(ph)VNEAVK ddPTM_HeLa_CUDC101_4h_R1 1 RLTVNEAVK 9 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 RLT(1)VNEAVK 142.1 0.015489 13975000 5500.5 4144.4 3696 4385.9 4453.1 5128.8 4563.9 4903.3 3274.2 3032 TRUE FALSE FALSE 4855.739728 4272.084052 3895.81694 4564.775959 4124.603685 5030.976685 4739.931152 5461.471852 3139.23609 3013.965529 1.611080048 1.417429632 1.29258842 1.514541529 1.368497299 1.669221707 1.572656059 1.812055181 1.041563369 1 11.5574472 -11.27378448 0.306006584 5.89E-16 1.579748711 0.697760025 0.137120195 5.838517495 0.262098267 3.828290966 0.064827997 5.32E-12 11.27378448 1.579748711 AFSIGK(ac)MSTAK ddPTM_HeLa_CUDC101_4h_R1 1 AFSIGKMSTAK 11 1 O15042-2;O15042;E7ET15;E7EW00;H0Y8D9;C9J5L1;U3KPT1;C9JDJ7 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 0 1 AFSIGK(1)MSTAK 104.82 0.0047532 0 191.54 0 140.42 78.683 197.73 255.97 245.48 304.89 285.26 285.09 FALSE TRUE FALSE 169.0879716 0 148.0115299 81.89203284 183.1438518 251.0877987 254.9482458 339.5974452 273.5014621 283.394272 0.596652749 0 0.522281304 0.288968553 0.646251071 0.886001672 0.899623849 1.198321486 0.965091708 1 8.146666788 -9.052507246 1.090405575 0.978064044 0.618535498 0.163926828 0.315045855 0.69356004 1.596043168 0.163358225 0.062150434 8.86E-10 9.052507246 -0.359528546 EGSGS(ph)T(ph)KPGTPGNSPSSQR ddPTM_HeLa_CUDC101_4h_R1 1 EGSGSTKPGTPGNSPSSQR 19 1 P78524 P78524 ST5 Suppression of tumorigenicity 5 protein 2 0 EGS(0.072)GS(0.644)T(0.86)KPGT(0.167)PGNS(0.09)PS(0.156)S(0.011)QR 74.726 0.015266 17358000 5147.4 4528.5 4452 4564.3 4594.5 4558.1 4277 3846.3 4523.5 5730.4 TRUE FALSE FALSE 4544.029575 4668.017717 4692.688587 4750.451883 4255.572889 4471.161837 4441.965323 4284.147245 4337.039415 5696.315326 0.79771384 0.819480217 0.823811239 0.833951706 0.747074669 0.784921757 0.779796249 0.752090957 0.761376288 1 12.4758133 -11.24621809 0.253583866 1.372210137 0.76337659 0 0.080161586 2.935035656 0.105980394 0.602076668 0.016399783 5.67E-12 11.24621809 -0.608833547 AFTHTAQYDEAISDYFR ddPTM_HeLa_CUDC101_4h_R1 3 AFTHTAQYDEAISDYFR 17 0 C9JLK0;P31939-2;P31939 C9JLK0 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase 0 0 ;; ;; 185.74 5.20E-11 38147500 3745.46 3336.93 3086.01 2826.25 3249.15 3178.09 3414.41 3147.89 3206.8 3497.46 FALSE FALSE TRUE 3306.422857 3439.736858 3252.849035 2941.516691 3009.466678 3117.473228 3546.104937 3506.233073 3074.614347 3476.656952 0.951035118 0.989380576 0.935625539 0.846076197 0.86562083 0.896687039 1.019975507 1.008507058 0.884359426 1 11.76348501 -8.206623666 0.655804014 0.99519356 0.931637023 0 0.064365785 0.986268098 0.934482582 0.027556313 0.015723038 6.21E-09 8.206623666 -0.063556536 AFVDFLSDEIKEER ddPTM_HeLa_CUDC101_4h_R1 2 AFVDFLSDEIKEER 14 1 Q07021 Q07021 C1QBP "Complement component 1 Q subcomponent-binding protein, mitochondrial" 0 0 ; ; 246.25 9.81E-56 165785000 7450.8 5728.3 5404.6 5986.5 6447.2 6302.9 5819.7 5120.3 6250.5 7740 FALSE FALSE TRUE 6577.428519 5904.782133 5696.789024 6230.655346 5971.602901 6182.682684 6044.167778 5703.174255 5992.851744 7693.962136 0.854881841 0.767456615 0.740423325 0.809811023 0.776141446 0.803575918 0.785572852 0.741253226 0.778903202 1 12.90951101 -8.284418287 0.599315864 0.996840906 0.771518539 0.025593793 0.07122776 0.161478298 0.12693166 0.016277809 0.008243069 5.19E-09 8.284418287 -0.225322367 RQDEDYDEQVEES(ph)LQDEDDNDVYILTK ddPTM_HeLa_CUDC101_4h_R1 1 RQDEDYDEQVEESLQDEDDNDVYILTK 27 1 H0Y8C6;O00410-2;O00410;O00410-3 H0Y8C6 IPO5 Importin-5 1 0 RQDEDYDEQVEES(1)LQDEDDNDVYILTK 132.39 9.77E-12 9230300 1260.4 765.48 826.66 942.72 1023 1215.7 934.68 1092 851.31 672.52 TRUE FALSE FALSE 1112.657823 789.0635315 871.3517401 981.1681964 947.5353281 1192.512548 970.7309207 1216.308866 816.2186415 668.5198211 1.664360259 1.18031434 1.303404495 1.467672559 1.417363103 1.783810308 1.452060044 1.819405839 1.220934093 1 9.384826526 -11.18663561 0.374572872 1.90E-13 1.544234578 0.373806483 0.200312535 6.496850975 0.396974248 5.155007649 0.062184106 6.51E-12 11.18663561 1.544234578 AFVHWYVGEGMEEGEFSEAR ddPTM_HeLa_CUDC101_4h_R1 7 AFVHWYVGEGMEEGEFSEAR 20 0 Q9BQE3;F5H5D3;P0DPH8;P0DPH7;Q9NY65;C9J2C0;Q9NY65-2;P68363;P68363-2;Q71U36-2;Q71U36;P68366-2;P68366 Q9BQE3;P68363;P68366-2 TUBA1C;TUBA8;TUBA1B;TUBA1A;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-8 chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain 0 0 ;;;;;; ;;;;;; 148.36 1.79E-05 99873800 10573.47 9002.03 9601.62 8443.7 10791.94 8987.05 8829.03 8786.06 10726.42 13186 FALSE FALSE TRUE 9334.063875 9279.371874 10120.71262 8788.070583 9995.840087 8815.636995 9169.568645 9786.229556 10284.27243 13107.56909 0.712112506 0.707939955 0.772127353 0.670457697 0.762600603 0.672560788 0.69956287 0.746609039 0.784605624 1 13.67811253 -9.215863297 0.630492199 1.035229502 0.711983544 0.336059384 0.073941994 0.204331599 0.122983371 0.037202243 0.007087592 6.08E-10 9.215863297 -0.323245958 GILAADEST(ph)GSIAK ddPTM_HeLa_CUDC101_4h_R1 2 GILAADESTGSIAK 14 0 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 GILAADES(0.325)T(0.668)GS(0.006)IAK;GILAADES(0.317)T(0.647)GS(0.036)IAK ; 146.67 0.0015929 56378000 4852.1 4482.9 4525 3842.2 4343.9 4549.9 3881.7 4128.4 4120.5 5041.9 TRUE FALSE FALSE 4283.344193 4621.012835 4769.635187 3998.901523 4023.459151 4463.118238 4031.418469 4598.360368 3950.651246 5011.910555 0.854633008 0.922006246 0.951660078 0.797879667 0.80277952 0.890502372 0.804367601 0.917486519 0.788252544 1 12.29114495 -11.1825845 0.2836832 1.238182982 0.849272012 0 0.084443073 8.032014856 0.342635282 1.179859634 0.026524559 6.57E-12 11.1825845 -0.38891097 HLPS(ph)PPTLDSIITEYLR ddPTM_HeLa_CUDC101_4h_R1 2 HLPSPPTLDSIITEYLR 17 0 Q9Y4B6-3;Q9Y4B6-2;Q9Y4B6 Q9Y4B6-3 VPRBP Protein VPRBP 1 0 HLPS(1)PPTLDSIITEYLR;HLPS(0.999)PPT(0.001)LDSIITEYLR ; 142.97 0.00018435 249210000 1653.34 1323.98 1447.13 1211.25 1643.78 1662.37 1499.35 1194.25 1440.91 1190.02 TRUE FALSE FALSE 1459.537992 1364.770254 1525.366225 1260.65001 1522.521624 1630.663062 1557.180432 1330.198593 1381.51508 1182.941708 1.233820721 1.153708797 1.289468631 1.065690728 1.287063947 1.378481332 1.316362777 1.124483636 1.167864038 1 10.20816327 -11.17820511 0.253892538 0.593162625 1.270575123 0.16296498 0.103917497 8.94864197 0.333224269 2.032272845 0.059204502 6.63E-12 11.17820511 0.677412498 AGAAGGPEEEAEK(ac)PVK ddPTM_HeLa_CUDC101_4h_R1 2 AGAAGGPEEEAEKPVK 16 1 Q8WW12;Q8WW12-2 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 0 1 ; AGAAGGPEEEAEK(1)PVK;AGAAGGPEEEAEK(1)PVK 246.51 2.70E-50 3555500 1736.14 994.88 961.13 982.08 1663.06 1436.58 1618.12 1659.73 1801.95 1292.83 FALSE TRUE FALSE 1532.632301 1025.531074 1013.091595 1022.133467 1540.379377 1409.17963 1680.53143 1848.666954 1727.672858 1285.14019 1.192579855 0.797991598 0.788312126 0.795347835 1.19860805 1.096518217 1.307663898 1.438494391 1.344345833 1 10.32771003 -4.651124159 1.465644058 1.029901166 1.476334061 0.394272889 0.178620087 0.503582469 1.577107358 0.025909387 0.26455382 2.23E-05 4.651124159 0.446432895 SCLLEEEEES(ph)GEEAAEAME ddPTM_HeLa_CUDC101_4h_R1 1 SCLLEEEEESGEEAAEAME 19 0 Q969H6-2;Q969H6 Q969H6-2 POP5 Ribonuclease P/MRP protein subunit POP5 1 0 SCLLEEEEES(1)GEEAAEAME 124.09 5.09E-05 11034000 2580.2 2291.4 2157.4 1934.8 2965.5 2699.4 2345.8 2214.2 2430.1 1589.6 TRUE FALSE FALSE 2277.752867 2361.995318 2274.03557 2013.709507 2746.740973 2647.913443 2436.278292 2466.255578 2329.930249 1580.144989 1.441483461 1.494796576 1.439130957 1.274382744 1.73828414 1.67574081 1.541806802 1.560778027 1.474504091 1 10.62584123 -11.14754698 0.190442216 0.104931022 1.670395296 0.102632372 0.186816713 7.28749869 0.19535533 2.848358898 0.163203208 7.12E-12 11.14754698 1.565464274 VDALHCPPAAVVTVTPSPEGVFSSLQAKPS(ph)PSPR ddPTM_HeLa_CUDC101_4h_R1 1 VDALHCPPAAVVTVTPSPEGVFSSLQAKPSPSPR 34 1 Q6UB99 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 1 0 VDALHCPPAAVVT(0.042)VT(0.048)PS(0.144)PEGVFS(0.199)S(0.199)LQAKPS(0.312)PS(0.056)PR 44.477 0.013642 20702000 1228.1 1079 1053.2 1019.9 1058.5 1212.7 1050.4 1225.2 1249 703.27 TRUE FALSE FALSE 1084.14398 1112.242711 1110.139178 1061.49593 980.4165638 1189.569768 1090.91428 1364.671816 1197.515691 699.0869188 1.55079998 1.590993453 1.587984481 1.518403366 1.402424416 1.701604959 1.56048447 1.952077458 1.712971104 1 9.449328029 -11.1466145 0.227212095 1.02E-12 1.711136002 0 0.259404641 5.598817402 0.184645183 2.853610201 0.110476964 7.13E-12 11.1466145 1.711136002 KPSDGSPDT(ph)KPSR ddPTM_HeLa_CUDC101_4h_R1 1 KPSDGSPDTKPSR 13 2 Q92733 Q92733 PRCC Proline-rich protein PRCC 1 0 KPS(0.005)DGS(0.009)PDT(0.904)KPS(0.082)R 98.421 0.029709 26961000 6780.9 3267.4 7742.4 6971.9 4779.5 4168.1 4350.6 1462.3 7263.5 9598.8 TRUE FALSE FALSE 5986.053181 3368.064721 8160.977563 7256.244217 4426.925807 4088.600437 4518.404099 1628.762321 6964.095456 9541.705911 0.627356705 0.352983497 0.855295441 0.760476616 0.463955382 0.428497847 0.473542587 0.170699279 0.729858531 1 13.22003151 -11.10864552 0.09131535 2.094132632 6.54E-14 0.450856824 0.177831995 39.41075111 0.483842215 11.29989872 2.498199807 7.79E-12 11.10864552 -2.094132632 DSGYIDCWDSERSDS(ph)LS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 DSGYIDCWDSERSDSLSPPR 20 1 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 DSGYIDCWDS(0.012)ERS(0.356)DS(0.776)LS(0.856)PPR 69.069 0.01036 6184800 2096.6 1474.9 1633.5 1869 2424.1 1792.8 1724.9 2004.9 2107.4 1165.1 TRUE FALSE FALSE 1850.839726 1520.339921 1721.811951 1945.225899 2245.278972 1758.605327 1791.429971 2233.129712 2020.53208 1158.169933 1.598072677 1.31270885 1.486666077 1.679568639 1.93864381 1.518434624 1.546776444 1.92815376 1.744590342 1 10.17763123 -11.08927047 0.206664428 7.74E-15 1.77742403 0 0.282588132 7.9472572 0.239439886 3.811556903 0.191717558 8.14E-12 11.08927047 1.77742403 AVLVDLEPGTMDS(ph)VR ddPTM_HeLa_CUDC101_4h_R1 2 AVLVDLEPGTMDSVR 15 0 P68371;Q3ZCM7;M0R0X0;M0QY85;M0QY37;M0QX14;M0QZL7;M0R278;A0A075B724;P04350 P68371;P04350 TUBB4B;TUBB8;TUBB4A Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain 1 0 AVLVDLEPGT(0.175)MDS(0.825)VR;AVLVDLEPGT(0.291)MDS(0.709)VR ; 80.632 0.022552 9902600 4290.8 4353.8 3699.6 3773.8 3981.1 4112.8 4068.3 2669.4 3951.1 4398 TRUE FALSE FALSE 3787.838928 4487.935417 3899.611567 3927.711876 3687.422184 4034.355192 4225.215694 2973.273706 3788.233986 4371.8405 0.866417457 1.026555158 0.891983952 0.898411522 0.843448471 0.922804753 0.966461538 0.680096565 0.866507821 1 12.09402505 -11.06858828 0.017498635 1.976738196 8.88E-07 0.126443988 0.086010478 2270.299727 5.312054441 347.5913365 258.1424882 8.54E-12 11.06858828 -1.976737309 (ac)AARDS(ph)DS(ph)EEDLVSYGTGLEPLEEGERPK ddPTM_HeLa_CUDC101_4h_R1 1 AARDSDSEEDLVSYGTGLEPLEEGERPK 28 2 K7EQ19;Q9BRR8 K7EQ19 GPATCH1 G patch domain-containing protein 1 2 0 AARDS(0.999)DS(0.999)EEDLVS(0.001)YGTGLEPLEEGERPK 101.3 2.54E-10 5002000 614.16 608.06 564.08 643.3 415.7 484.23 463.14 632.45 634.89 737.83 TRUE FALSE FALSE 542.1690958 626.7936079 594.575871 669.5365546 385.0346392 474.9941195 481.0034649 704.4455515 608.7195655 733.4413543 0.739212607 0.854592674 0.810665867 0.912869926 0.524969906 0.647623858 0.655817213 0.960466092 0.829949882 1 9.518537803 -11.06258346 0.283332052 1.399501564 0.725814364 0.107977823 0.135364712 10.17671653 0.458453001 2.551835465 0.065903057 8.66E-12 11.06258346 -0.6736872 NNK(ac)K(ac)TNK(ac)NK ddPTM_HeLa_CUDC101_4h_R1 1 NNKKTNKNK 9 3 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 0 3 NNK(1)K(1)TNK(1)NK 167.93 0.0064421 5355200 3215.4 1623.6 1178.7 730.69 704.25 930.51 795.77 570.33 2775.1 2446.2 FALSE TRUE FALSE 2838.495686 1673.621192 1242.424087 760.4906965 652.2988806 912.7620721 826.4631155 635.2540618 2660.709203 2431.649894 1.167312652 0.68826569 0.510938721 0.312746789 0.268253618 0.375367389 0.339877512 0.261244048 1.094199132 1 11.24771981 -6.901969891 1.925629655 1.079631908 0.321458339 0.958600675 0.069513971 0.049637527 0.371858506 0.01461439 0.019889502 1.25E-07 6.901969891 -0.758173569 down AGAHLQGGAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 AGAHLQGGAKR 11 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 ; AGAHLQGGAK(1)R;AGAHLQGGAK(1)R 116.52 0.0024008 1001100 737.13 550.33 702.98 920.45 796.73 575.01 696.12 852.92 597.03 795.85 FALSE TRUE FALSE 650.7247388 567.285015 740.9852252 957.9899295 737.9568152 564.0426423 722.9695816 950.0129652 572.4201707 791.1162488 0.822539974 0.717069098 0.936632545 1.210934463 0.932804523 0.71297062 0.913860109 1.200851287 0.723560124 1 9.627745894 -6.521538522 24.99988586 0.895491159 0.981073264 0.148593117 0.160469232 126.9703007 2368463.326 0.025759249 0.036715774 3.01E-07 6.521538522 0.085582105 AGALQCSPSDAYTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 AGALQCSPSDAYTKK 15 1 Q9Y490 Q9Y490 TLN1 Talin-1 0 1 AGALQCSPSDAYTK(1)K 164.64 0.00010092 529090 471.13 241.98 269.95 322.51 715.56 417.18 456.32 452.29 529.94 107.9 FALSE TRUE FALSE 415.9048556 249.435117 284.5443136 335.6633518 662.7745644 409.2229866 473.9204153 503.7768654 508.0956489 107.258206 3.877604065 2.325557421 2.652890852 3.129488776 6.179243427 3.815307022 4.418500299 4.69686082 4.737126117 1 6.744944218 -5.957362017 7.834604278 2.430420922 4.68706128 0.350540968 1.121760433 0.163808461 25.79045472 0.174163866 0.315883248 1.10E-06 5.957362017 2.256640358 VTSSVPLPSGSTSS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 4 VTSSVPLPSGSTSSPGR 17 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 0 VTSSVPLPSGST(0.001)S(0.275)S(0.724)PGR;VTSSVPLPS(0.002)GS(0.007)T(0.063)S(0.212)S(0.715)PGR;VTSSVPLPS(0.002)GS(0.007)T(0.007)S(0.036)S(0.947)PGR;VTSSVPLPS(0.051)GS(0.171)T(0.033)S(0.171)S(0.573)PGR ;;; 197.51 1.79E-16 458914000 20893.3 18347.9 17883.5 17476.6 20821.8 17324.6 16758 17921.7 22013.5 19920.2 TRUE FALSE FALSE 18444.21905 18913.17705 18850.3361 18189.37129 19285.8173 16994.16212 17404.36167 19961.83389 21106.09421 19801.71376 0.931445594 0.955128292 0.951954782 0.918575609 0.973946878 0.858216734 0.87893209 1.008086175 1.065872099 1 14.27333768 -11.05845166 0.256017249 1.109810546 0.92140002 0.389882317 0.045901034 13.03147025 0.516432187 0.821447253 0.026568306 8.74E-12 11.05845166 -0.188410527 KGSITEYT(ph)AAEEKEDGRR ddPTM_HeLa_CUDC101_4h_R1 1 KGSITEYTAAEEKEDGRR 18 3 J3KN59;Q12982;Q12982-2 J3KN59 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 1 0 KGS(0.15)IT(0.063)EY(0.028)T(0.76)AAEEKEDGRR 54.875 0.032519 22988000 2695.6 2647.1 2297.8 2458.7 2886.2 2861.2 2610.7 2678 2517.7 1896.3 TRUE FALSE FALSE 2379.625854 2728.654013 2422.026018 2558.976413 2673.290776 2806.627377 2711.395574 2982.852695 2413.91934 1885.020723 1.262387105 1.447545897 1.284880314 1.357532245 1.418175802 1.488910622 1.438390326 1.582397826 1.280579736 1 10.88036467 -11.04164298 0.08786522 7.27E-10 1.893188959 0.523852159 0.105600949 15.54528886 0.186971525 3.955699389 0.946551175 9.09E-12 11.04164298 1.893188959 PIMT(ph)S(ph)S(ph)EAFEPPK ddPTM_HeLa_CUDC101_4h_R1 1 PIMTSSEAFEPPK 13 0 A2A3P3;Q5SZL2-3;Q5SZL2-5;Q5SZL2-2;Q5SZL2;Q5SZL2-4 A2A3P3 CEP85L Centrosomal protein of 85 kDa-like 3 0 PIMT(1)S(1)S(1)EAFEPPK 69.815 0.022031 29570000 7123.4 6378.3 6126 5888.6 5969.4 5823.4 5560.2 5361.5 7307.2 7269 TRUE FALSE FALSE 6288.40585 6574.807863 6457.19009 6128.762561 5529.049255 5712.328347 5774.658777 5971.831488 7005.994123 7225.763665 0.870275606 0.909911833 0.893634277 0.848181984 0.765185455 0.790550122 0.799176259 0.826463716 0.969585285 1 12.81893435 -11.03809186 0.109013545 1.339992978 0.696121494 0.814992936 0.031484863 16.22603195 0.244725837 1.623470595 0.284964054 9.16E-12 11.03809186 -0.643871484 RDS(ph)FIGTPYWMAPEVVMCETSK ddPTM_HeLa_CUDC101_4h_R1 4 RDSFIGTPYWMAPEVVMCETSK 22 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 RDS(0.985)FIGT(0.015)PYWMAPEVVMCETSK;RDS(0.788)FIGT(0.204)PY(0.007)WMAPEVVMCETSK;RDS(0.636)FIGT(0.244)PY(0.119)WMAPEVVMCETSK;RDS(0.996)FIGT(0.003)PY(0.002)WMAPEVVMCETSK ;;; 146.45 2.48E-07 416287900 7807.68 6054.03 5306.64 5575.85 6656.23 6780.9 7045 6857.03 5970.32 4050.22 TRUE FALSE FALSE 6892.475586 6240.547489 5593.53301 5803.257264 6165.213174 6651.56563 7316.72801 7637.606578 5724.220883 4026.129111 1.711936055 1.550011765 1.389307907 1.441398699 1.531300414 1.652099435 1.817310823 1.897009849 1.421767838 1 11.97517772 -11.02413256 0.323258047 4.32E-15 1.674018218 0.32990582 0.197932957 4.659307455 0.255048638 3.32502479 0.068171907 9.46E-12 11.02413256 1.674018218 AGAVEK(ac)GVPLYR ddPTM_HeLa_CUDC101_4h_R1 2 AGAVEKGVPLYR 12 1 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;P06733-2 P06733 ENO1 Alpha-enolase;Enolase 0 1 ; AGAVEK(1)GVPLYR;AGAVEK(1)GVPLYR 145.46 0.00020613 2589200 1175.59 950.35 1112.99 1118.39 1182.93 1323.18 1035.92 1292.4 945.34 1710.51 FALSE TRUE FALSE 1037.789122 979.6291571 1173.161606 1164.002778 1095.667611 1297.942546 1075.875781 1439.521592 906.3726851 1700.33581 0.610343625 0.576138637 0.689958771 0.684572289 0.644383071 0.763344828 0.632743117 0.846610171 0.533055106 1 10.73160399 -9.296434521 0.987603775 1.002825055 0.674780453 0 0.160879178 0.224614882 0.387362475 0.052376038 0.013583484 5.05E-10 9.296434521 -0.328044602 DPLQNS(ph)PGSEGK ddPTM_HeLa_CUDC101_4h_R1 1 DPLQNSPGSEGK 12 0 Q6IE81-2;Q6IE81 Q6IE81-2 JADE1 Protein Jade-1 1 0 DPLQNS(0.99)PGS(0.01)EGK 163.33 7.62E-05 19903000 2322.1 2000.4 1774.9 1674.3 2050.9 1687.2 1638.3 1322.4 2375.4 2551.9 TRUE FALSE FALSE 2049.906958 2062.029953 1870.856463 1742.585191 1899.609193 1655.019471 1701.48978 1472.936671 2277.485007 2536.721185 0.808093128 0.81287213 0.737509693 0.686943918 0.748844297 0.652424666 0.67074371 0.580645866 0.897806594 1 11.30874924 -10.99335669 0.052886513 2.055707693 1.18E-23 0.873503229 0.041988203 27.10662261 0.19670451 5.818494382 2.438324542 1.02E-11 10.99335669 -2.055707693 AGDDEPEYEDGR ddPTM_HeLa_CUDC101_4h_R1 1 AGDDEPEYEDGR 12 0 F8WE91;Q9Y6K1;A0A0C4DG02;Q9Y6K1-2 F8WE91 DNMT3A DNA (cytosine-5)-methyltransferase 3A 0 0 123.79 0.015131 5670000 1064.2 790.6 678.36 942.69 846.59 990.57 705.85 706.21 745.7 1090.7 FALSE FALSE TRUE 939.4560892 814.9574489 715.0341935 981.1369729 784.1387423 971.6765277 733.0748709 786.6020918 714.9619304 1084.212468 0.866487074 0.751658437 0.659496376 0.904930539 0.723233467 0.896204901 0.676135806 0.725505484 0.659429726 1 10.08243179 -8.038333032 0.718390512 0.985365445 0.76152925 0 0.129785303 0.314146776 0.358602481 0.029185509 0.019990025 9.16E-09 8.038333032 -0.223836195 HSCSPMGDGDPEAMEES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 HSCSPMGDGDPEAMEESPR 19 0 Q9P275;A0A075B784 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36;Ubiquitin carboxyl-terminal hydrolase 1 0 HSCSPMGDGDPEAMEES(1)PR 149.07 2.74E-05 11567000 1698.3 1246.3 1118.6 1139.8 1485.8 1661.2 1610.9 1330.1 1953.3 852.18 TRUE FALSE FALSE 1499.227848 1284.697026 1179.0749 1186.285971 1376.195494 1629.515378 1673.032953 1481.513208 1872.784147 847.1111955 1.769812342 1.516562445 1.391877366 1.40038991 1.624574792 1.923614499 1.974986237 1.748900517 2.210789041 1 9.726407546 -10.9812224 0.286012924 9.63E-22 1.758725957 0 0.418846331 6.033885128 0.285923579 3.954074784 0.109739353 1.04E-11 10.9812224 1.758725957 NLLEENFEEHS(ph)MSPER ddPTM_HeLa_CUDC101_4h_R1 1 NLLEENFEEHSMSPER 16 0 P38398-8;P38398-4;P38398;P38398-7;Q5YLB2 P38398-8 BRCA1 Breast cancer type 1 susceptibility protein 1 0 NLLEENFEEHS(0.726)MS(0.274)PER 123.6 0.00033959 8078700 2875.3 2481.3 2141.4 2232.3 2049.7 2388.7 2099.9 1371.7 2531.3 4078.6 TRUE FALSE FALSE 2538.261693 2557.745912 2257.170561 2323.342843 1898.497715 2343.139527 2180.893846 1527.848783 2426.958743 4054.340306 0.626060346 0.630866114 0.556729428 0.573050772 0.468263039 0.57793361 0.537915834 0.376842758 0.598607556 1 11.98525147 -10.9668857 0.190366445 1.724231574 0.414343969 0.199359315 0.137296003 3.187700096 0.09125613 1.036017439 0.068556161 1.08E-11 10.9668857 -1.309887604 FLGSDEEDKDSLQELST(ph)EQK ddPTM_HeLa_CUDC101_4h_R1 1 FLGSDEEDKDSLQELSTEQK 20 1 Q99567;J3KMX1 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 FLGSDEEDKDS(0.001)LQELS(0.411)T(0.588)EQK 100.35 0.00086921 34507000 2714.4 2162.2 2096.9 2329.7 2636.6 2473.9 2409.8 2816.1 2696.4 1497.5 TRUE FALSE FALSE 2396.222147 2228.814819 2210.264757 2424.715236 2442.103271 2426.714479 2502.746793 3136.673441 2585.253251 1488.592803 1.609723049 1.497262928 1.484801453 1.628864005 1.640544859 1.630207048 1.681283685 2.107140001 1.736709492 1 10.53973345 -10.93868913 0.165401805 3.79E-14 1.911560492 0.022450404 0.255877546 8.052531876 0.197818289 3.358021875 0.300254702 1.15E-11 10.93868913 1.911560492 GS(ph)SPQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK ddPTM_HeLa_CUDC101_4h_R1 2 GSSPQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK 38 1 Q27J81-2;Q27J81 Q27J81-2 INF2 Inverted formin-2 1 0 GS(0.368)S(0.338)PQNT(0.097)T(0.097)T(0.097)PKPS(0.003)VEGQQPAAAAACEPVDHAQSESILK;GS(0.198)S(0.185)PQNT(0.188)T(0.188)T(0.188)PKPS(0.054)VEGQQPAAAAACEPVDHAQSESILK ; 86.447 1.73E-11 44211000 2213.87 1746.99 1413.35 1479.1 2029.92 2238.48 1975.08 1637.01 1749.72 1123.75 TRUE FALSE FALSE 1954.363515 1800.812691 1489.759976 1539.424091 1880.176846 2195.784724 2051.259497 1823.360601 1677.595801 1117.065885 1.749550802 1.612091744 1.333636624 1.378096057 1.683138722 1.965671634 1.836292312 1.632276686 1.501787695 1 10.12549856 -10.9322386 0.335318453 5.13E-12 1.706387924 0.175799871 0.240264171 4.872827237 0.294559367 3.639077704 0.078125262 1.17E-11 10.9322386 1.706387924 RS(ph)AAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGR ddPTM_HeLa_CUDC101_4h_R1 1 RSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGR 35 1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 RS(0.925)AAGS(0.075)PPAVAAAGSGNGAGGGGGVGCAPAAGAGR 152.6 8.23E-24 9098500 1414.1 1110.2 1068.4 1125.1 1508.6 1394.8 1201.9 1282.1 1610.8 1012.5 TRUE FALSE FALSE 1248.341342 1144.403946 1126.160936 1170.986441 1397.313584 1368.196514 1248.257686 1428.049082 1544.402142 1006.477605 1.240307122 1.137038659 1.118913059 1.163450071 1.388320591 1.359390917 1.240224004 1.418858278 1.5344625 1 9.975099356 -10.9149804 0.045263989 1.46E-13 2.009123325 0 0.177918053 138.6999636 0.878926539 27.8083728 13.38750573 1.22E-11 10.9149804 2.009123325 NLS(ph)GSTLYPVSNIPR ddPTM_HeLa_CUDC101_4h_R1 1 NLSGSTLYPVSNIPR 15 0 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 0 NLS(0.935)GS(0.052)T(0.013)LYPVSNIPR 132.51 0.00062189 6328900 1090.8 834.22 962.1 847.58 1231.1 983.61 900.87 893.32 1041.8 832.95 TRUE FALSE FALSE 962.9380775 859.9213294 1014.114036 882.147976 1140.284206 964.8492781 935.6168577 995.0119379 998.856563 827.9955764 1.162974906 1.038557879 1.22478195 1.065401798 1.377162195 1.165283131 1.129978087 1.201711659 1.206354951 1 9.69347925 -10.86982865 0.223324807 0.749836676 1.20889643 0 0.1070939 11.44900679 0.413264688 1.512812885 0.078358387 1.35E-11 10.86982865 0.459059753 QVETEEAGVVTTAT(ph)ASVNLKVSPK ddPTM_HeLa_CUDC101_4h_R1 1 QVETEEAGVVTTATASVNLKVSPK 24 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QVET(0.001)EEAGVVT(0.032)T(0.079)AT(0.755)AS(0.07)VNLKVS(0.063)PK 72.513 0.00073445 93007000 845.44 715.37 765.05 675.05 742.86 671.29 695.26 635.74 722.58 890.94 TRUE FALSE FALSE 746.3388048 737.4097018 806.4109171 702.5814568 688.0606978 658.4862617 722.0764111 708.1100719 692.7949466 885.6406493 0.842710647 0.832628564 0.910539639 0.793303082 0.776907314 0.743514045 0.815315345 0.799545586 0.782252878 1 9.79057763 -10.86240982 0.186271308 1.285623526 0.754496423 0 0.077419534 6.082986174 0.176401496 0.783727273 0.058786157 1.37E-11 10.86240982 -0.531127103 S(ph)SPAFGDRR ddPTM_HeLa_CUDC101_4h_R1 1 SSPAFGDRR 9 1 P13716;P13716-2 P13716 ALAD Delta-aminolevulinic acid dehydratase 1 0 S(0.5)S(0.5)PAFGDRR 102.52 0.0081988 17983000 904.17 711.51 1096.9 828.17 802.13 687.76 642.23 901.16 995.71 1159.4 TRUE FALSE FALSE 798.1845632 733.4307798 1156.201732 861.9463523 742.958468 674.6421239 667.0010262 1003.744412 954.6664124 1152.503837 0.692565645 0.636380336 1.003208575 0.747890223 0.644647284 0.585370827 0.578740829 0.870925006 0.828341201 1 10.17055584 -10.8492243 0.321022596 1.411492155 0.689536666 0.184239615 0.137078452 6.949354183 0.412193252 2.075009745 0.053697715 1.42E-11 10.8492243 -0.721955489 AGEK(ac)GSHEEEPVK ddPTM_HeLa_CUDC101_4h_R1 2 AGEKGSHEEEPVK 13 1 C9JQA7;C9J8X5;Q9P0W2-3;Q9P0W2 C9JQA7 HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related 0 1 ; AGEK(1)GSHEEEPVK;AGEK(1)GSHEEEPVK 122.1 0.0031844 5855700 3993 4480.9 4378 4824.8 4778 3833.6 4172.8 4439.9 3914.8 5038 FALSE TRUE FALSE 3524.946593 4618.951218 4614.687923 5021.576199 4425.536459 3760.480467 4333.746294 4945.320269 3753.430287 5008.033752 0.703858394 0.922308324 0.921457033 1.002704144 0.883687427 0.750889601 0.865358843 0.987477424 0.749481827 1 12.29002857 -4.259959128 22.2478015 0.86982856 0.98747756 0.119225848 0.098187629 60.88959559 914661.6417 0.016682622 0.139399145 5.50E-05 4.259959128 0.117649 AGELTEDEVER ddPTM_HeLa_CUDC101_4h_R1 3 AGELTEDEVER 11 0 P62269 P62269 RPS18 40S ribosomal protein S18 0 0 ;; ;; 251.56 7.10E-55 297034300 7099.8 6278.6 6375.5 6580.2 6394.9 6389.9 6421.2 5320.9 6038.2 6518.8 FALSE FALSE TRUE 6267.572207 6472.036224 6720.178815 6848.568998 5923.160967 6268.023304 6668.867835 5926.609748 5789.30284 6480.025888 0.967214069 0.998767032 1.037060489 1.05687371 0.914064399 0.967283683 1.029142159 0.914596616 0.893407363 1 12.66178386 -4.240084489 23.51426048 0.989891282 0.914596443 0.146763264 0.049515048 2618.223619 2882873.217 0.005400257 0.296871865 5.75E-05 4.240084489 -0.075294839 PIFGGTVYHS(ph)PVSR ddPTM_HeLa_CUDC101_4h_R1 2 PIFGGTVYHSPVSR 14 0 O43663-2;O43663-4;O43663;H0YNE4;G3V3N7;O43663-3 O43663-2;O43663-3 PRC1 Protein regulator of cytokinesis 1 1 0 PIFGGTVY(0.004)HS(0.995)PVS(0.001)R;PIFGGTVYHS(0.988)PVS(0.012)R ; 122.16 0.00085461 34709000 4519.4 4119.7 3753.4 3694 3544.2 3189.4 2803.1 1328.56 4341.8 6370.6 TRUE FALSE FALSE 3989.642783 4246.623074 3956.320157 3844.657287 3282.751427 3128.567509 2911.216506 1479.7979 4162.829166 6332.707388 0.630005863 0.670585709 0.624743876 0.607111153 0.518380406 0.494033171 0.459711199 0.233675395 0.657353784 1 12.6286067 -10.84401283 0.09107372 2.036396576 1.07E-13 0.577223365 0.119983274 14.51020608 0.192112209 4.139756983 1.022419218 1.43E-11 10.84401283 -2.036396576 SSSS(ph)PELQTLQDILGDPGDKADVGR ddPTM_HeLa_CUDC101_4h_R1 2 SSSSPELQTLQDILGDPGDKADVGR 25 1 P49815;X5D2U8;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4;H3BQK4;A0A2R8Y670 P49815 TSC2 Tuberin 1 0 S(0.011)S(0.011)S(0.159)S(0.816)PELQT(0.004)LQDILGDPGDKADVGR;S(0.018)S(0.018)S(0.198)S(0.763)PELQT(0.003)LQDILGDPGDKADVGR ; 118.15 2.70E-09 26010000 5117.9 4627.8 4146.4 4544.9 5031.2 5295.8 4899.6 4287.1 4253.1 3966.2 TRUE FALSE FALSE 4517.98752 4770.377033 4370.566926 4730.260667 4660.0584 5194.791438 5088.579213 4775.126135 4077.785418 3942.608866 1.145938558 1.209954422 1.108546923 1.199779341 1.181973297 1.317602536 1.290662956 1.211158981 1.034286067 1 11.94493488 -10.8162664 0.088062609 0.506813691 1.466240807 0.767662423 0.046318606 23.12562682 0.298103953 3.055248353 0.796222316 1.53E-11 10.8162664 0.959427116 GEGDAPFSEPGTT(ph)STQRPSSPETATK ddPTM_HeLa_CUDC101_4h_R1 1 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GEGDAPFS(0.001)EPGT(0.025)T(0.213)S(0.213)T(0.213)QRPS(0.156)S(0.156)PET(0.019)AT(0.003)K 52.91 0.022942 672150000 2010.4 1666.3 1770 1500.4 1880.8 1589 1577.6 1387.5 1717.8 2322.1 TRUE FALSE FALSE 1774.74396 1717.636728 1865.691554 1561.592797 1742.057131 1558.692472 1638.44856 1545.447392 1646.991557 2308.288046 0.768857233 0.744117153 0.808257686 0.676515567 0.754696596 0.675259084 0.709811136 0.669521031 0.713512146 1 11.17260755 -10.81426023 0.205814415 1.400541522 0.657403769 0 0.097102143 2.84500269 0.094828329 0.561687585 0.03597713 1.53E-11 10.81426023 -0.743137753 LGDMNS(ph)SFEDVDIFYS(ph)FWY(ph)NFDS(ph)WR ddPTM_HeLa_CUDC101_4h_R1 1 LGDMNSSFEDVDIFYSFWYNFDSWR 25 0 Q99543-2;Q99543;C9IZ83 Q99543-2 DNAJC2 "DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed" 4 0 LGDMNS(0.841)S(0.169)FEDVDIFY(0.485)S(0.509)FWY(0.999)NFDS(0.998)WR 40.328 0.0030422 0 193.91 144.71 225.57 91.843 209.47 183.92 173.11 208.5 116.92 120.69 TRUE FALSE FALSE 171.1801637 149.1683436 237.7649965 95.58875452 194.0178154 180.4120324 179.7869107 232.2347972 112.1005081 119.9721305 1.42683274 1.243358294 1.981835244 0.796757998 1.617190714 1.503782851 1.498572293 1.935739544 0.934387909 1 6.906555497 -10.81318107 0.093401916 1.67E-16 2.013291158 0.367801302 0.303684028 59.78450026 0.820484188 17.17971513 4.158315224 1.54E-11 10.81318107 2.013291158 QVRGPS(ph)QPRK ddPTM_HeLa_CUDC101_4h_R1 1 QVRGPSQPRK 10 2 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 QVRGPS(1)QPRK 91.087 0.022397 53934000 3635.6 3267 3085.9 3085.5 3285.1 3292.6 3087.1 2915.1 3380.5 3486.6 TRUE FALSE FALSE 3209.440479 3367.652398 3252.733088 3211.340027 3042.764718 3229.799141 3206.170481 3246.943201 3241.154359 3465.861548 0.926015201 0.971663856 0.938506355 0.926563275 0.877924486 0.931889256 0.925071714 0.936835807 0.935165561 1 11.75899831 -10.8099545 0.28004953 1.099009706 0.919258593 0.058047389 0.029219843 5.308178971 0.264851473 0.34190524 0.011977258 1.55E-11 10.8099545 -0.179751113 RAPAPPPPQPPPPS(ph)PLIPNR ddPTM_HeLa_CUDC101_4h_R1 2 RAPAPPPPQPPPPSPLIPNR 20 1 O75128-3;O75128;O75128-7;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4;H7C1N2;J3KR05;O75128-2 O75128-3;H7C1N2 COBL Protein cordon-bleu 1 0 RAPAPPPPQPPPPS(1)PLIPNR;RAPAPPPPQPPPPS(1)PLIPNR ; 160.15 3.96E-06 62200000 3072.2 2957.9 3075 2426.1 2560.3 2184.51 2402.6 2890.9 2698.6 3731.3 TRUE FALSE FALSE 2712.081373 3049.029393 3241.243801 2525.046844 2371.43177 2142.844111 2495.269087 3219.988371 2587.362566 3709.106062 0.731195422 0.82203888 0.87386118 0.680769652 0.639353993 0.577725219 0.672741368 0.868130573 0.697570391 1 11.85685581 -10.79860548 0.251862694 1.377971087 0.681163833 0 0.13135313 6.927126211 0.300940848 1.55521587 0.067753462 1.59E-11 10.79860548 -0.696807254 AGFAGDDAPR ddPTM_HeLa_CUDC101_4h_R1 4 AGFAGDDAPR 10 0 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;P63267-2;C9JUM1;C9JZR7;C9JTX5;Q6S8J3;A5A3E0;P0CG38;P0CG39;F8WCH0;P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P60709;P63267;P63261 ACTB;ACTG2;POTEE;POTEF;POTEI;POTEJ;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;; ;;; 167.23 4.95E-05 534856000 19043.2 16939 16344.3 17220.3 16933 15556.7 15428.3 16110.6 17480.8 16484.6 FALSE FALSE TRUE 16810.98496 17460.87051 17227.9223 17922.61827 15683.88633 15259.98187 16023.3747 17944.56558 16760.23403 16386.54887 1.025901494 1.06556119 1.051345371 1.093739653 0.957119553 0.931250503 0.977837056 1.095079002 1.022804384 1 14.00022442 -4.244300299 23.49331395 1.013263387 1.095079155 0.21034506 0.047139863 1912.0407 2620825.164 0.006842703 0.237719257 5.70E-05 4.244300299 0.081815769 PELAK(ac)SAPAPK ddPTM_HeLa_CUDC101_4h_R1 2 PELAKSAPAPK 11 1 Q99880 Q99880 HIST1H2BL Histone H2B type 1-L 0 1 ; PELAK(1)SAPAPK;PELAK(1)SAPAPK 189.58 6.67E-06 305940000 5060 8494.1 12508 18420.1 16976.8 16959.4 17091.4 15656.4 1574.7 1917.23 FALSE TRUE FALSE 4466.87447 8755.793153 13184.22031 19171.3513 15724.45529 16635.9277 17750.62102 17438.66129 1509.790199 1905.826231 2.34379945 4.594224286 6.91785017 10.05933856 8.250728757 8.728984539 9.313871715 9.150184319 0.792197198 1 10.89620087 -6.893248709 1.323204468 1.497781752 9.122904253 0.969354605 0.601528098 0.046234741 0.160838145 0.114328594 0.159927088 1.28E-07 6.893248709 7.625122501 up AHS(ph)IAGFSPECPEDPVGQNVVK ddPTM_HeLa_CUDC101_4h_R1 1 AHSIAGFSPECPEDPVGQNVVK 22 0 E7EV07 E7EV07 ARHGEF4 1 0 AHS(1)IAGFSPECPEDPVGQNVVK 113.67 6.44E-06 9403200 1492.5 1187.2 1109.6 1041.1 1763.4 1421.4 1254.1 1536.5 1466.9 854.46 TRUE FALSE FALSE 1317.551412 1223.776225 1169.588332 1083.560558 1633.317495 1394.289163 1302.471057 1711.408949 1406.433761 849.3776339 1.551196264 1.440791676 1.376994502 1.275711197 1.922957975 1.641542122 1.53344167 2.014897592 1.655840353 1 9.730262309 -10.78644001 0.119006509 2.52E-14 2.020451612 0.112908001 0.265383838 21.16283972 0.379314374 7.19283395 1.24910387 1.64E-11 10.78644001 2.020451612 PY(ph)VCRECER ddPTM_HeLa_CUDC101_4h_R1 1 PYVCRECER 9 1 Q9NQW5-1 Q9NQW5-1 1 0 PY(1)VCRECER 76.478 0.0030338 0 689.94 653.7 468.8 560.81 579.91 652.44 697.84 680.13 677.25 409.31 TRUE FALSE FALSE 609.0662791 673.8397222 494.144746 583.6822558 537.1311946 639.995794 724.7559226 757.55325 649.3334683 406.8754059 1.496935598 1.656132842 1.214486643 1.434547892 1.320136796 1.572952763 1.78127238 1.86188017 1.595902478 1 8.668443267 -10.7787432 0.099586796 5.82E-25 2.047479203 0.105328459 0.234891911 31.18553406 0.462886683 9.520244908 2.147274948 1.66E-11 10.7787432 2.047479203 REDFQDISVPVQEDELS(ph)KVEESSEISPEPK ddPTM_HeLa_CUDC101_4h_R1 1 REDFQDISVPVQEDELSKVEESSEISPEPK 30 2 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 REDFQDISVPVQEDELS(0.555)KVEES(0.083)S(0.083)EIS(0.279)PEPK 69.292 2.36E-05 45066000 6965.2 5892.6 5976.7 4944 6244.1 5381.8 5205.9 4424.4 7303.8 8785.3 TRUE FALSE FALSE 6148.749815 6074.144022 6299.818481 5145.63769 5783.485183 5279.151132 5406.693307 4928.055812 7002.734273 8733.044645 0.704078596 0.695535666 0.721377107 0.589214632 0.662253019 0.604502936 0.619107485 0.564299853 0.801866309 1 13.092269 -10.77820528 0.199575615 1.515026633 0.549151655 0.666989874 0.070323001 2.137236382 0.069551949 0.532408458 0.037321076 1.67E-11 10.77820528 -0.965874978 AGLESGAEPGDGDS(ph)DTTK ddPTM_HeLa_CUDC101_4h_R1 2 AGLESGAEPGDGDSDTTK 18 0 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 AGLESGAEPGDGDS(1)DTTK;AGLESGAEPGDGDS(0.997)DT(0.003)T(0.001)K ; 258.13 2.24E-70 1235730000 8203 6781.4 7634.5 7279.9 6543.7 6914.7 6808.2 6668 7501.1 8270.2 TRUE FALSE FALSE 7241.456775 6990.326896 8047.244163 7576.805788 6060.984288 6782.813618 7070.794555 7427.058167 7191.901483 8221.008483 0.880847744 0.850300412 0.978863382 0.921639456 0.737255569 0.825058584 0.860088464 0.903424219 0.874819859 1 13.00509967 -10.73285605 0.223199204 1.181032062 0.838996836 0.014326225 0.070937591 10.60737028 0.404563179 1.03666183 0.060835693 1.85E-11 10.73285605 -0.342035226 TVFPGAVPVLPAS(ph)PPPK ddPTM_HeLa_CUDC101_4h_R1 2 TVFPGAVPVLPASPPPK 17 0 Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R165;Q9UBC2-4;M0R2S2 Q9UBC2-3 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 TVFPGAVPVLPAS(1)PPPK;TVFPGAVPVLPAS(1)PPPK ; 125.45 0.00028442 84108000 11429 9409.8 9430.8 8960.6 9501.9 8257.7 8381.6 7199.2 9266.2 14526.1 TRUE FALSE FALSE 10089.30995 9699.704785 9940.657575 9326.051999 8800.963767 8100.198131 8704.88112 8018.727828 8884.243314 14439.69811 0.698720283 0.671738752 0.688425582 0.645861979 0.609497768 0.560967277 0.602843706 0.555325171 0.61526517 1 13.81775296 -10.72672427 0.189669853 1.536934008 0.515661029 0 0.124215657 1.526700998 0.047610989 0.383598843 0.030884772 1.88E-11 10.72672427 -1.021272979 (ac)AEPVS(ph)PLKHFVLAK ddPTM_HeLa_CUDC101_4h_R1 1 AEPVSPLKHFVLAK 14 1 C9JXQ1;Q8IWA4-2;Q8IWA4-3;Q8IWA4 C9JXQ1 MFN1 Mitofusin-1 1 0 AEPVS(1)PLKHFVLAK 57.348 0.0020519 0 822.94 642.26 653.46 546.73 880.94 673.82 927.23 686.83 697.97 504.14 TRUE FALSE FALSE 726.4762207 662.0472693 688.7880242 569.0280126 815.9548113 660.9680062 962.9935717 765.0159509 669.1993812 501.1413529 1.449643332 1.321078904 1.37443861 1.135464095 1.628192937 1.318925294 1.921600695 1.526547244 1.33535055 1 8.96907378 -10.72611697 0.082313046 4.24E-13 2.063003103 0.317541586 0.200698787 50.44618 0.623008515 13.93564066 4.074965191 1.88E-11 10.72611697 2.063003103 AGGEESQFEMDI ddPTM_HeLa_CUDC101_4h_R1 2 AGGEESQFEMDI 12 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 0 0 ; ; 150.36 0.0033536 12296300 8427.1 7846.7 7467.5 6633.1 8034.2 7035.7 7167.2 7399.9 8386.9 7363 FALSE FALSE TRUE 7439.288113 8088.447526 7871.215638 6903.626489 7441.533072 6901.505745 7443.641305 8242.274705 8041.188432 7319.204549 1.016406641 1.105099259 1.075419547 0.943220871 1.016713363 0.94293112 1.017001404 1.126116185 1.098642397 1 12.83747115 -10.7347042 0.00362901 2.37E-05 2.007190866 0 0.064748672 172237.4518 91.54878737 26037.58868 24613.52279 1.84E-11 10.7347042 2.007167195 AGGEPWGAK(ac)KPR ddPTM_HeLa_CUDC101_4h_R1 1 AGGEPWGAKKPR 12 2 Q8N163-2;Q8N163;E5RHJ4 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 0 1 AGGEPWGAK(0.97)K(0.03)PR 136.5 0.00052158 2858600 1558 1347.2 1426.7 1446.3 1661.9 1454.1 1441.8 1502.3 759.17 869.72 FALSE TRUE FALSE 1375.373602 1388.705635 1503.831718 1505.286365 1539.304948 1426.365465 1497.410709 1673.315759 727.8766913 864.5468668 1.590860663 1.606281497 1.739444992 1.741127547 1.780476001 1.649841692 1.73201797 1.935482996 0.841916985 1 9.755800364 -9.212293797 0.329418072 0.70354232 1.814873174 0.93868976 0.083034861 0.473865126 0.070061755 0.198451036 0.033188984 6.13E-10 9.212293797 1.111330854 AGGEPWGAKK(ac)PR ddPTM_HeLa_CUDC101_4h_R1 1 AGGEPWGAKKPR 12 2 Q8N163-2;Q8N163;E5RHJ4 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 0 1 AGGEPWGAK(0.276)K(0.724)PR 117.14 0.003899 3605300 1083.1 1134.3 1115.8 1506.4 1090.5 1182.8 1161.5 1474.2 567.14 459.26 FALSE TRUE FALSE 956.1406599 1169.246439 1176.123523 1567.837503 1010.055988 1160.240061 1206.299444 1642.016969 543.7622492 456.5283011 2.094373246 2.561169671 2.576233544 3.434261358 2.21247179 2.541441698 2.64233223 3.596747376 1.19108114 1 8.834560488 -8.223907944 0.391681738 0.805554741 2.969823924 0.752018558 0.391648285 0.451452955 0.16199106 0.405118139 0.186469342 5.97E-09 8.223907944 2.164269184 SSS(ph)MAAGLER ddPTM_HeLa_CUDC101_4h_R1 5 SSSMAAGLER 10 0 Q9UQB8;Q9UQB8-2;Q9UQB8-6;Q9UQB8-4;Q9UQB8-5;Q9UQB8-3;I3L4C2;B4DWA1;I3L3C6;I3L0Y9 Q9UQB8 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 0 SS(0.001)S(0.998)MAAGLER;S(0.026)S(0.084)S(0.89)MAAGLER;SS(0.004)S(0.996)MAAGLER;S(0.071)S(0.071)S(0.857)MAAGLER;SS(0.015)S(0.985)MAAGLER ;;;; 163.46 3.89E-05 155190000 13061.86 9054.69 9756.07 10476.41 13311.75 13346.47 12287.04 11614.44 7620.65 7681.66 TRUE FALSE FALSE 11530.76857 9333.654266 10283.51265 10903.68328 12329.76872 13091.90832 12760.95525 12936.5809 7306.523581 7635.969145 1.510059608 1.222327394 1.346720038 1.427937054 1.614695985 1.714505137 1.671163805 1.69416359 0.95685609 1 12.89859556 -10.72580911 0.100143397 2.16E-14 2.048365044 0.837690809 0.107064769 21.14278154 0.320999413 6.512855308 1.492378982 1.88E-11 10.72580911 2.048365044 AGGIETIANEFSDR ddPTM_HeLa_CUDC101_4h_R1 3 AGGIETIANEFSDR 14 0 Q92598-2;Q92598-3;Q92598;R4GN69 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 0 ;; ;; 135.1 0.00020451 11486300 1685.22 1384.74 1511.88 1203.73 1406.45 1571.53 1521.23 1587.84 1831.67 1481.07 FALSE FALSE TRUE 1487.681066 1427.402198 1593.616806 1252.823312 1302.698986 1541.555684 1579.904351 1768.593287 1756.167787 1472.26053 1.010474054 0.969530983 1.082428533 0.850952183 0.884829118 1.047067182 1.073114655 1.20127739 1.192837648 1 10.52381728 -4.421718252 1.835980731 0.990035556 1.228252303 0.299791001 0.091207934 0.39294533 1.710853109 0.009446504 0.143350862 3.79E-05 4.421718252 0.238216747 AGGIETIANEYSDR ddPTM_HeLa_CUDC101_4h_R1 1 AGGIETIANEYSDR 14 0 A0A087WYC1;P34932;A0A087WTS8;P34932-2 A0A087WYC1 HSPA4 Heat shock 70 kDa protein 4 0 0 136.96 0.0034339 8957200 1176.9 958.91 1122 1012 1261 1203.4 1014.2 1070.6 1304 1290.3 FALSE FALSE TRUE 1038.945566 988.4528805 1182.658714 1053.273734 1167.978542 1180.44715 1053.318034 1192.472776 1250.248568 1282.625238 0.810014909 0.770648239 0.922061003 0.821185879 0.910615593 0.920336755 0.821220418 0.929712547 0.974757498 1 10.32488399 -9.414332929 1.160903488 0.999433196 0.858362513 0.455914623 0.053853842 0.323871274 0.785582335 0.036246297 0.009322096 3.85E-10 9.414332929 -0.141070683 AGGK(ac)AGK(ac)DSGK ddPTM_HeLa_CUDC101_4h_R1 2 AGGKAGKDSGK 11 2 P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;Q71UI9-5 P0C0S5;Q71UI9 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V;Histone H2A 0 2 ; AGGK(1)AGK(1)DSGK;AGGK(1)AGK(1)DSGK 180.66 2.40E-05 4123200 3332 2852.2 9648.3 9984.2 6171.2 5263.5 5917.6 2108.12 667.54 1012.67 FALSE TRUE FALSE 2941.428011 2940.072901 10169.91628 10391.39883 5715.962871 5163.107507 6145.843814 2348.099859 640.0237187 1006.646594 2.92200662 2.920660458 10.10276729 10.32278746 5.678222035 5.129017014 6.1052646 2.332596041 0.635797829 1 9.975341566 -6.934818412 8.943330326 1.960206991 6.646924426 0.517136283 2.263005692 0.202419311 25.68485083 0.384113298 0.505117948 1.16E-07 6.934818412 4.686717434 AGGK(ac)AGK(ac)DSGK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 5 AGGKAGKDSGKAK 13 3 P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;Q71UI9-5 P0C0S5;Q71UI9 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V;Histone H2A 0 3 ;;;; AGGK(1)AGK(1)DSGK(1)AK;AGGK(1)AGK(1)DSGK(1)AK;AGGK(1)AGK(1)DSGK(1)AK;AGGK(1)AGK(1)DSGK(1)AK;AGGK(1)AGK(1)DSGK(1)AK 184.31 8.11E-09 92991000 7948.22 16021.64 24003.48 28090.76 28427.52 25836.77 23794.4 23955.86 465.3 855.91 FALSE TRUE FALSE 7016.5417 16515.24774 25301.18074 29236.42261 26330.47849 25343.97666 24712.15798 26682.89827 446.1201371 850.8190093 8.246808809 19.41099994 29.73744176 34.36268148 30.94721462 29.78774144 29.04514087 31.36142702 0.524341995 1 9.732708457 -7.132490118 1.466503684 3.633391226 31.26469297 0.973197595 2.06151696 0.048616322 0.20072837 0.47888056 0.599082398 7.37E-08 7.132490118 27.63130174 AESCGS(ph)FDETESEESSK ddPTM_HeLa_CUDC101_4h_R1 1 AESCGSFDETESEESSK 17 0 A8MXB7;Q9Y343-2;Q9Y343 A8MXB7 SNX24 Sorting nexin-24 1 0 AES(0.001)CGS(0.999)FDETESEESSK 218.63 1.48E-32 12239000 2117.5 1767.7 1776.6 1766 2002.8 2024.4 2168.9 1930.5 1449.9 1139.4 TRUE FALSE FALSE 1869.28986 1822.160742 1872.64837 1838.025113 1855.057434 1985.787943 2252.5552 2150.260317 1390.134508 1132.622798 1.650408117 1.608797514 1.653373368 1.62280427 1.637842216 1.753265029 1.988795567 1.898478752 1.227358756 1 10.14545176 -10.72557267 0.195504431 3.23E-12 1.937718818 0.851169125 0.107041083 3.693257888 0.119582678 1.809210568 0.137690862 1.88E-11 10.72557267 1.937718818 LFRPPS(ph)PAPAAPGAR ddPTM_HeLa_CUDC101_4h_R1 1 LFRPPSPAPAAPGAR 15 1 Q86U90 Q86U90 YRDC "YrdC domain-containing protein, mitochondrial" 1 0 LFRPPS(1)PAPAAPGAR 84.403 0.0089954 888310000 1898.8 1764.3 1882 1651.2 1704.1 1337.3 1600.6 1766.7 1756.1 2252.8 TRUE FALSE FALSE 1676.225542 1818.655992 1983.746613 1718.543073 1578.391938 1311.793231 1662.335678 1967.813987 1683.712815 2239.400245 0.748515387 0.812117439 0.885838347 0.767412202 0.704827974 0.585778819 0.742312895 0.878723663 0.751858815 1 11.12889669 -10.69367729 0.305784749 1.306481848 0.735679915 0 0.113282502 5.360384555 0.320424359 1.182729642 0.040270212 2.02E-11 10.69367729 -0.570801933 VVPEDGS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 1 VVPEDGSPEK 10 0 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A 1 0 VVPEDGS(1)PEK 103.14 0.012851 12251000 7700.7 6753 7594.6 7163.6 6952.2 6854.1 6065.5 6359 7666.7 9316.9 TRUE FALSE FALSE 6798.03562 6961.051926 8005.187048 7455.762572 6439.350057 6723.369462 6299.448367 7082.882856 7350.675381 9261.482664 0.73401159 0.751613125 0.864352646 0.805029048 0.695282849 0.725949581 0.680177094 0.764767706 0.793682356 1 13.17702746 -10.67687383 0.330163482 1.315084777 0.730747666 0.131107041 0.083124463 2.936739926 0.198473714 0.714479571 0.021832999 2.10E-11 10.67687383 -0.584337112 QPGYQPPNPHPGPSS(ph)PPAAPASK ddPTM_HeLa_CUDC101_4h_R1 1 QPGYQPPNPHPGPSSPPAAPASK 23 0 Q9BUL9 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 1 0 QPGYQPPNPHPGPS(0.29)S(0.71)PPAAPASK 69.71 0.0013577 61073000 1475.4 1493.7 1070.9 1197.5 1298.5 1380 1021.5 1188 1473.3 1596 TRUE FALSE FALSE 1302.455849 1539.719127 1128.796093 1246.339226 1202.712242 1353.678799 1060.899597 1323.237118 1412.56995 1586.506921 0.820958189 0.970508925 0.711497743 0.785587008 0.758088242 0.853244812 0.668701525 0.834056946 0.890364821 1 10.6316381 -10.67151159 0.19538319 1.281235938 0.735928216 0.346438912 0.080893278 9.031263406 0.298363221 1.243124214 0.098920774 2.13E-11 10.67151159 -0.545307723 NSNNEVACK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 NSNNEVACKK 10 1 Q9H967;C9JE56;A0A0C4DFX7 Q9H967 WDR76 WD repeat-containing protein 76 0 1 ; NSNNEVACK(1)K;NSNNEVACK(1)K 179.57 0.00021338 3360900 1128.35 1090.86 1805.64 2032.74 2053.6 1873.75 2229.13 1502.49 875.54 667.04 FALSE TRUE FALSE 996.0865235 1124.468104 1903.25836 2115.643923 1902.110019 1838.011341 2315.108291 1673.527388 839.4498706 663.0724164 1.502228865 1.695845093 2.870362743 3.190667974 2.868630895 2.771961697 3.49148635 2.523898366 1.266000289 1 9.37302263 -6.884337518 1.959767446 1.225346331 3.00515937 0.893405944 0.271039266 0.071046456 0.553198187 0.04942503 0.067671709 1.31E-07 6.884337518 1.779813039 up RS(ph)PPEEPPDFCCPK ddPTM_HeLa_CUDC101_4h_R1 3 RSPPEEPPDFCCPK 14 1 A0A087X0G7;A0A087WUW6;A0A087X1B1;Q9Y6K9-3;Q9Y6K9;Q9Y6K9-2 A0A087X0G7 IKBKG NF-kappa-B essential modulator 1 0 RS(1)PPEEPPDFCCPK;RS(1)PPEEPPDFCCPK;RS(1)PPEEPPDFCCPK ;; 132.06 0.00041113 39028100 7175 6945 6646.2 6629.9 7233.2 7352.7 6633.1 7297.8 7157.3 5206.6 TRUE FALSE FALSE 6333.957377 7158.967218 7005.513676 6900.295979 6699.621247 7212.459498 6888.940889 8128.552053 6862.273065 5175.630912 1.223803916 1.383206674 1.35355743 1.333227986 1.294454987 1.393542086 1.331034034 1.570543223 1.325881459 1 12.33751902 -10.65580869 0.119315374 0.339121811 1.621372488 0.167481651 0.12441486 10.99190936 0.206237011 2.396900994 0.443665808 2.21E-11 10.65580869 1.282250677 S(ph)KSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ddPTM_HeLa_CUDC101_4h_R1 3 SKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 36 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.272)KS(0.247)PLPPEEEAKDEEEDQT(0.224)LVNLDT(0.049)Y(0.125)T(0.048)S(0.035)DLHFQVSK;S(0.499)KS(0.499)PLPPEEEAKDEEEDQT(0.001)LVNLDTYTSDLHFQVSK;S(0.561)KS(0.43)PLPPEEEAKDEEEDQT(0.009)LVNLDTYTSDLHFQVSK ;; 86.793 1.16E-09 915358000 8808.9 6280.4 5316.39 5557.5 8853.1 6964.9 8201.9 5168.65 8442.2 7171.6 TRUE FALSE FALSE 7776.334095 6473.89168 5603.810125 5784.158872 8200.024451 6832.056137 8518.25003 5757.028224 8094.208943 7128.943004 1.090811652 0.908113822 0.786064655 0.81136276 1.150244075 0.958354714 1.194882611 0.807557056 1.13540099 1 12.79947247 -10.65258578 15.78448838 0.454590029 1.004889672 0 0.147901917 1306844.733 1042513.136 25735801.87 0.019874553 2.23E-11 10.65258578 0.550299644 GLGKPGGQGDAIQLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 GLGKPGGQGDAIQLSPK 17 1 Q5VV41 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 GLGKPGGQGDAIQLS(1)PK 112.53 0.00047632 85409000 4146.3 3772.6 3088.7 3362 3711.4 3670.2 3397.2 2827.8 3507.9 4216.6 TRUE FALSE FALSE 3660.276999 3888.829334 3255.684465 3499.116892 3437.617416 3600.19705 3528.231142 3149.705322 3363.302877 4191.519476 0.873257782 0.927785104 0.776731322 0.834808692 0.820136334 0.85892409 0.841754682 0.75144714 0.802406597 1 12.03325762 -10.65194976 0.163223005 1.24626742 0.767357903 0 0.073796117 8.081975346 0.216506339 0.836904009 0.093499898 2.23E-11 10.65194976 -0.478909517 EPSAPSIPTPAYQSS(ph)PAGGHAPTPPTPAPR ddPTM_HeLa_CUDC101_4h_R1 1 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPR 30 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 1 0 EPSAPSIPT(0.002)PAY(0.02)QS(0.34)S(0.638)PAGGHAPTPPTPAPR 99.868 2.71E-09 84124000 1702.3 1174.4 1202.9 1479.8 1794.3 1596.1 1481.7 525.08 1833.6 1802 TRUE FALSE FALSE 1502.758975 1210.581872 1267.932413 1540.15264 1661.938064 1565.657052 1538.849665 584.8529848 1758.018232 1791.281624 0.838929487 0.675818842 0.707835326 0.859804857 0.927792728 0.874042937 0.859077459 0.32649974 0.981430395 1 10.80677646 -10.65068781 0.040147856 1.986324684 3.06E-17 0.312935722 0.15533027 342.4454148 2.075769241 68.76812574 37.68926573 2.24E-11 10.65068781 -1.986324684 VQEHEDS(ph)GDS(ph)EVENEAK ddPTM_HeLa_CUDC101_4h_R1 3 VQEHEDSGDSEVENEAK 17 0 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 0 VQEHEDS(1)GDS(1)EVENEAK;VQEHEDS(1)GDS(1)EVENEAK;VQEHEDS(1)GDS(1)EVENEAK ;; 144.68 0.001633 458138000 11093.9 7690.3 8101 7800.3 8696.9 8755.2 9220.4 9053.7 8727.1 9129 TRUE FALSE FALSE 9793.489859 7927.229028 8538.964564 8118.42995 8055.347014 8588.209147 9576.033917 10084.33661 8367.365244 9074.700302 1.079208077 0.873552709 0.940963809 0.894622376 0.887670859 0.946390389 1.055245198 1.111258364 0.922054169 1 13.14763428 -10.65016644 18.11782831 0.482416241 1.002555027 0 0.086591519 4364124.99 1741703.319 93968444.32 0.013341553 2.24E-11 10.65016644 0.520138786 TLEPVRPPVVPNDYVPS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 TLEPVRPPVVPNDYVPSPTR 20 1 H0Y6B5;B7Z836;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-3;Q9NYB9-2;Q9NYB9-4;Q9NYB9;H7C3Q7 H0Y6B5 ABI2 Abl interactor 2 1 0 TLEPVRPPVVPNDYVPS(0.673)PT(0.327)R 80.102 0.0021136 12672000 491.08 440.68 356.54 687.08 436.47 537.86 463.78 310.07 540.94 463.36 TRUE FALSE FALSE 433.5163468 454.2568285 375.8156309 715.1020922 404.2724777 527.6012166 481.66815 345.3671155 518.6422242 460.6039141 0.941191192 0.986220079 0.815919317 1.552531514 0.877700917 1.145455348 1.045731778 0.749813679 1.126004813 1 8.847382861 -10.64306972 15.43517394 1.138153621 0.998085337 0 0.214468152 7831567.014 8806488.58 38113212.85 0.026958365 2.27E-11 10.64306972 -0.140068285 YYMSDDISRDS(ph)DGMDEQCR ddPTM_HeLa_CUDC101_4h_R1 2 YYMSDDISRDSDGMDEQCR 19 1 P46100-4;P46100;P46100-5;P46100-3;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNL6;A0A096LNN3 P46100-4 ATRX Transcriptional regulator ATRX 1 0 YYMS(0.022)DDIS(0.177)RDS(0.8)DGMDEQCR;YYMS(0.001)DDIS(0.26)RDS(0.738)DGMDEQCR ; 91.616 0.0017572 32638000 2031.71 1574.45 1540.06 1662.46 2050.02 1949.27 1476.8 1750.97 1789.31 1320.08 TRUE FALSE FALSE 1793.556034 1622.956938 1623.320302 1730.262305 1898.794109 1912.090922 1533.760671 1950.293347 1715.553884 1312.228105 1.366802026 1.236794831 1.237071737 1.318568241 1.447000031 1.457133035 1.168821689 1.486245676 1.307359504 1 10.35780281 -10.63981997 0.334588948 0.58581577 1.36504911 0.045758292 0.13847378 3.71471697 0.261228483 1.21552626 0.038097255 2.29E-11 10.63981997 0.77923334 AGGTEIGK(ac)TLAEK ddPTM_HeLa_CUDC101_4h_R1 2 AGGTEIGKTLAEK 13 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 0 1 ; AGGTEIGK(1)TLAEK;AGGTEIGK(1)TLAEK 264.3 5.71E-53 14326500 3727 3506.6 3300.2 3484.2 3288.7 3275 3147.5 3956.6 3751.6 3879.8 FALSE TRUE FALSE 3290.12671 3614.63419 3478.618795 3626.300736 3046.099153 3212.534832 3268.900129 4407.003351 3596.95746 3856.722777 0.853088723 0.937229456 0.901962364 0.940254445 0.789815429 0.832970119 0.847584936 1.142680873 0.932646101 1 11.91315973 -9.472741289 1.164919222 1.00101983 0.894815999 0.035572002 0.093874733 0.738757707 1.765677328 0.064167091 0.015157443 3.37E-10 9.472741289 -0.106203831 TSS(ph)DPNLNNHCQEVR ddPTM_HeLa_CUDC101_4h_R1 2 TSSDPNLNNHCQEVR 15 0 J3QR65;Q9NYA4 J3QR65 MTMR4 Myotubularin-related protein 4 1 0 T(0.029)S(0.029)S(0.943)DPNLNNHCQEVR;T(0.045)S(0.045)S(0.91)DPNLNNHCQEVR ; 146.67 0.00018802 23119700 5638.2 5283.6 4515.1 5055.7 5904.8 4499.6 5236 6294.5 5517.4 3033.7 TRUE FALSE FALSE 4977.298743 5446.381453 4759.199963 5261.893299 5469.214668 4413.777627 5437.954274 7011.040437 5289.970437 3015.655417 1.650486562 1.806035737 1.57816438 1.744858935 1.813607296 1.463621341 1.80324126 2.324881151 1.754169394 1 11.55825587 -10.63014338 0.203187594 5.14E-15 1.961117793 0.051042535 0.30697627 6.49437702 0.229013867 3.326841118 0.254685276 2.34E-11 10.63014338 1.961117793 AGHPPAVK(ac)AGGMR ddPTM_HeLa_CUDC101_4h_R1 2 AGHPPAVKAGGMR 13 1 P51397;B4DQ75 P51397 DAP Death-associated protein 1 0 1 ; AGHPPAVK(1)AGGMR;AGHPPAVK(1)AGGMR 77.674 0.019216 1823430 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 AAVLS(ph)DSEDEEK ddPTM_HeLa_CUDC101_4h_R1 1 AAVLSDSEDEEK 12 0 Q96ST2-3;Q96ST2;Q96ST2-2 Q96ST2-3 IWS1 Protein IWS1 homolog 1 0 AAVLS(0.966)DS(0.034)EDEEK 169.23 1.03E-06 6552000 2394 2428.2 1811.1 1851.2 1877.9 1710.1 1624.7 1624.4 2488.6 2850.5 TRUE FALSE FALSE 2113.378949 2503.009964 1909.013544 1926.699938 1739.371058 1677.482692 1687.365223 1809.31513 2386.018855 2833.545099 0.745842708 0.883349259 0.673719132 0.679960922 0.613849788 0.592008467 0.595496159 0.638534086 0.842061365 1 11.46839245 -10.60870857 0.116502505 1.59059429 0.413579676 0.69809491 0.072429077 10.31823209 0.191595689 2.038961093 0.400316281 2.46E-11 10.60870857 -1.177014615 AGK(ac)DSGK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 1 AGKDSGKAK 9 2 P0C0S5;A0A494C189;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;Q71UI9-5 P0C0S5;Q71UI9 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V;Histone H2A 0 2 AGK(1)DSGK(1)AK 96.143 0.027742 13746000 1529.4 892.91 1445.5 1107.9 516.42 466.87 380.93 159.35 453.24 422.91 FALSE TRUE FALSE 1350.12605 920.4194987 1523.648102 1153.084951 478.3247255 457.9652326 395.6225977 177.4897599 434.5572554 420.3945125 3.211569158 2.189418442 3.624329189 2.742863944 1.137799641 1.089370149 0.9410746 0.422198089 1.033689172 1 8.715600027 -5.642587998 5.519410045 2.254445853 0.876013521 0.427779123 0.798093313 0.202203894 9.008203271 0.143709406 0.290565742 2.28E-06 5.642587998 -1.378432332 AGK(ac)DSGK(ac)AK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 1 AGKDSGKAKAK 11 3 Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;Q71UI9-5 Q71UI9 H2AFV Histone H2A.V;Histone H2A 0 3 AGK(1)DSGK(1)AK(1)AK 150.09 0.0037061 2571600 3312.9 3140.8 2515 1098 765.91 586.22 683.41 452.41 633.97 626.64 FALSE TRUE FALSE 2924.566884 3237.564325 2650.968507 1142.781186 709.4103452 575.0388302 709.7693526 503.9105257 607.8374883 622.9127174 4.694986637 5.197460631 4.255762378 1.834576746 1.138859948 0.923145112 1.139436285 0.808958481 0.97579881 1 9.282886217 -6.023817222 4.748138975 3.117012503 1.042805875 0.38920553 1.315303837 0.213762316 12.39316051 0.252682784 0.441554379 9.47E-07 6.023817222 -2.074206628 AGK(ac)DSGK(ac)AK(ac)TK ddPTM_HeLa_CUDC101_4h_R1 2 AGKDSGKAKTK 11 3 P0C0S5;A0A494C189 P0C0S5 H2AFZ Histone H2A.Z 0 3 ; AGK(1)DSGK(1)AK(1)TK;AGK(1)DSGK(1)AK(1)TK 168.83 0.0010342 102876000 30000 29773 23794.3 11908.9 7305.7 4887.3 4488.6 4192.5 4720.2 3944 FALSE TRUE FALSE 26483.44548 30690.27084 25080.69183 12394.59642 6766.773066 4794.082895 4661.726806 4669.757253 4525.631358 3920.540913 6.755048874 7.828070545 6.397252928 3.161450599 1.725979455 1.222811597 1.189051947 1.191100248 1.154338511 1 11.936837 -5.848621475 3.288654404 4.354683011 1.272634622 0.350097176 2.093759404 0.2916034 6.290500091 0.403194451 0.781445083 1.42E-06 5.848621475 -3.082048389 AGK(ac)FPSLLTHNENMVAK ddPTM_HeLa_CUDC101_4h_R1 1 AGKFPSLLTHNENMVAK 17 1 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 1 AGK(1)FPSLLTHNENMVAK 112.34 0.00045304 0 0 77.897 0 0 145.01 0 0 0 0 0 FALSE TRUE FALSE 0 80.29691424 0 0 134.3129012 0 0 0 0 0 0 S(ph)LNLEDYK ddPTM_HeLa_CUDC101_4h_R1 1 SLNLEDYK 8 0 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog 1 0 S(1)LNLEDYK 120.57 0.0073529 9709800 3251.8 2806 2376.9 2622.5 3491.6 2971.3 2351.8 1194.2 3234.2 3803.2 TRUE FALSE FALSE 2870.628933 2892.449534 2505.402404 2729.456885 3234.031624 2914.627403 2442.509714 1330.142901 3100.884907 3780.578397 0.759309458 0.76508122 0.662703465 0.721968069 0.855433028 0.770947484 0.646067733 0.35183582 0.820214417 1 11.88439126 -10.55751293 0.054991899 1.96650442 5.70E-17 0.454071383 0.117964392 95.84715762 0.822828373 21.53999033 9.731304067 2.77E-11 10.55751293 -1.96650442 VDVS(ph)CEPLEGVEK ddPTM_HeLa_CUDC101_4h_R1 2 VDVSCEPLEGVEK 13 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 VDVS(1)CEPLEGVEK;VDVS(1)CEPLEGVEK ; 157.09 8.27E-05 120020000 10110.3 7603.1 8735.6 7862.7 9423.5 8132.2 8539.9 10512.4 9424.8 4773.3 TRUE FALSE FALSE 8925.18596 7837.342499 9207.87296 8183.374891 8728.347179 7977.091834 8869.286804 11709.08912 9036.305755 4744.908199 1.881002874 1.651737435 1.940579791 1.724664535 1.839518661 1.68118992 1.869222002 2.467716683 1.904421619 1 12.21216446 -10.55467301 0.296695186 2.66E-14 1.96554964 0 0.353099903 3.363808184 0.20589122 2.446705866 0.102848845 2.79E-11 10.55467301 1.96554964 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPS(ph)PEAR ddPTM_HeLa_CUDC101_4h_R1 2 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEAR 42 0 Q15424-2;Q15424;Q15424-4;Q15424-3;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPT(0.003)EAPS(0.997)PEAR;TDCEPVGLEPAVEQSSAASELAEASSEELAEAPT(0.001)EAPS(0.999)PEAR ; 116.41 6.87E-22 28980000 11075.4 10046.3 9010.7 9130.3 10599.4 11036.1 9197.1 9040.4 11810.5 9299.1 TRUE FALSE FALSE 9777.158401 10355.8146 9497.845698 9502.673099 9817.503379 10825.60478 9551.835228 10069.52259 11323.66619 9243.78854 1.057700353 1.120299815 1.027484095 1.028006326 1.062064903 1.171122071 1.033324723 1.089328531 1.225002729 1 13.17426854 -10.55259856 0.211276316 0.904940041 1.090947931 0 0.083174494 13.02069279 0.497939402 0.653942817 0.049779539 2.80E-11 10.55259856 0.18600789 QQPPEPEWIGDGESTS(ph)PSDK ddPTM_HeLa_CUDC101_4h_R1 1 QQPPEPEWIGDGESTSPSDK 20 0 Q8NE71;Q5STZ8;Q8NE71-2;A0A0G2JIC2 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 QQPPEPEWIGDGES(0.001)T(0.068)S(0.926)PS(0.005)DK 121.5 1.54E-05 49099000 5729.5 4841.6 4862 4283 4537.7 4665.3 4103.1 3767.3 4560.4 6595.3 TRUE FALSE FALSE 5057.896695 4990.763957 5124.854427 4457.679253 4202.962911 4576.317175 4261.357941 4196.154204 4372.418382 6556.070862 0.77148292 0.761243138 0.781696009 0.679931524 0.641079543 0.698027412 0.649986559 0.640041008 0.666926651 1 12.67861573 -10.50689694 0.158097149 1.434839071 0.564106294 0 0.108619891 3.074520057 0.083644334 0.56631878 0.073654575 3.11E-11 10.50689694 -0.870732776 FDSSLLSS(ph)DDETK ddPTM_HeLa_CUDC101_4h_R1 1 FDSSLLSSDDETK 13 0 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 FDSSLLS(0.253)S(0.747)DDETK 251.84 4.63E-56 51849000 8956.8 8213.6 7642.8 7391.7 8420.7 8674.1 8781 8932.7 7927.3 4647.6 TRUE FALSE FALSE 7906.897482 8466.65128 8055.992886 7693.165476 7799.521737 8508.655995 9119.686111 9949.562461 7600.533339 4619.955869 1.71146602 1.832626008 1.743738061 1.665203239 1.688224295 1.841718024 1.973976889 2.15360552 1.645152801 1 12.17366336 -10.50650033 0.215584495 2.17E-13 2.016813109 0.337701465 0.231381621 3.29727132 0.131930934 1.825994116 0.139532836 3.12E-11 10.50650033 2.016813109 LASVPAGGAVAVSAAPGS(ph)AAPAAGSAPAAAEEKKDEK ddPTM_HeLa_CUDC101_4h_R1 2 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEK 37 2 P05387;H0YDD8 P05387 RPLP2 60S acidic ribosomal protein P2 1 0 LASVPAGGAVAVS(0.002)AAPGS(0.998)AAPAAGSAPAAAEEKKDEK;LASVPAGGAVAVS(0.004)AAPGS(0.995)AAPAAGS(0.001)APAAAEEKKDEK ; 108.52 2.96E-16 37629000 3587.3 3640.3 3188.9 2694.77 4437 3281.4 3327.3 4109 3220 2205.2 TRUE FALSE FALSE 3166.802132 3752.453328 3361.30158 2804.674368 4109.69135 3218.812762 3455.635076 4576.751951 3087.270237 2192.083372 1.444654055 1.711820534 1.53338218 1.279456066 1.874787885 1.46838063 1.576415897 2.087854873 1.408372636 1 11.09808695 -10.50455835 0.127109285 4.11E-17 2.022879504 0.351618184 0.232558125 15.84532739 0.335768629 5.762576425 1.05345409 3.13E-11 10.50455835 2.022879504 FDSSLLS(ph)SDDETK ddPTM_HeLa_CUDC101_4h_R1 1 FDSSLLSSDDETK 13 0 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 FDSSLLS(0.875)S(0.124)DDETK 243.3 1.32E-46 54780000 4234.7 3790.9 3966.3 3487.3 4323.4 3469 3996.9 4501.8 3692.8 2174.8 TRUE FALSE FALSE 3738.314885 3907.693136 4180.730175 3629.527167 4004.471395 3402.834605 4151.061772 5014.266715 3540.581221 2161.864193 1.729208938 1.807557176 1.933854212 1.678887684 1.852323291 1.574027923 1.920130684 2.319417997 1.637744514 1 11.07806018 -10.50146962 0.243894351 1.31E-10 1.987979277 0.280550502 0.269843948 3.813467174 0.180567482 2.32600149 0.143895853 3.15E-11 10.50146962 1.987979276 SRS(ph)APPNLWAAQR ddPTM_HeLa_CUDC101_4h_R1 1 SRSAPPNLWAAQR 13 1 Q92934;F5H3B1;F5H1R6 Q92934 BAD Bcl2-associated agonist of cell death 1 0 S(0.223)RS(0.777)APPNLWAAQR 112.03 0.0023009 20142000 1139.6 1061.7 821.81 891.14 1234 932.84 1305.6 1065.2 775.4 634.46 TRUE FALSE FALSE 1006.017816 1094.409719 866.2395344 927.484541 1142.970278 915.0476312 1355.957429 1186.458062 743.4376838 630.6862037 1.595116255 1.735268208 1.373487369 1.470595893 1.812264597 1.450876245 2.149971605 1.88121772 1.178775878 1 9.300778564 -10.46602266 0.135140574 2.46E-15 2.099896649 0.631106123 0.197765644 13.50243425 0.31081709 5.339046417 0.910983492 3.42E-11 10.46602266 2.099896649 KTNTTASAK(ac)VAPVR ddPTM_HeLa_CUDC101_4h_R1 2 KTNTTASAKVAPVR 14 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 0 1 ; KTNTTASAK(1)VAPVR;KTNTTASAK(1)VAPVR 149.3 0.0018088 5437700 1606.62 1833.06 2259.96 2645.27 2615.9 2929.2 2354.23 3040.8 1049.32 1136.14 FALSE TRUE FALSE 1418.294439 1889.534406 2382.140274 2753.155544 2422.930269 2873.33039 2445.03344 3386.952381 1006.066585 1129.382189 1.255814421 1.673069068 2.109241935 2.437753643 2.145359023 2.544161241 2.164930051 2.99894262 0.89081145 1 10.14131807 -6.880706093 0.91121536 1.066521944 2.496107074 0.883433033 0.225854812 0.108519479 0.179374657 0.04254198 0.062806884 1.32E-07 6.880706093 1.42958513 up AGLQFPVGR ddPTM_HeLa_CUDC101_4h_R1 3 AGLQFPVGR 9 0 P0C0S5;A0A494C189;P16104;Q71UI9;C9J0D1;Q71UI9-2;Q71UI9-5;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;A0A3B3IS11;Q9BTM1;Q96QV6;Q9BTM1-2;Q8IUE6;Q93077;Q7L7L0;P04908 P0C0S5;Q71UI9;A0A0U1RR32;Q93077 H2AFZ;H2AFX;H2AFV;HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST1H2AA;HIST2H2AB;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A.Z;Histone H2AX;Histone H2A.V;Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-A;Histone H2A type 2-B;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E 0 0 ;; ;; 129.68 0.016491 28544000 6512 4007.3 2492.08 4226.67 3949.56 5164.8 4576 3307.87 2999.82 2493.1 FALSE FALSE TRUE 5748.673232 4130.760163 2626.809383 4399.051872 3658.208827 5066.290045 4752.497853 3684.42455 2876.16615 2478.27093 2.319630659 1.666791194 1.059936325 1.775048812 1.476113359 2.044284175 1.917666787 1.48669159 1.16055356 1 11.2751182 -9.62727169 1.458957272 1.001921843 1.796185573 0.347393541 0.335362897 0.348021394 1.335878272 0.265702413 0.061296861 2.36E-10 9.62727169 0.79426373 TLNAETPKS(ph)SPLPAK ddPTM_HeLa_CUDC101_4h_R1 1 TLNAETPKSSPLPAK 15 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 TLNAET(0.001)PKS(0.5)S(0.5)PLPAK 87.419 0.007608 305800000 4267.1 4422.2 4071.1 4157.9 4131.4 3983 4665.9 4320.5 4079.2 3193.3 TRUE FALSE FALSE 3766.917007 4558.44274 4291.19598 4327.477134 3826.634853 3907.030911 4845.865326 4812.328256 3911.053649 3174.30611 1.186689902 1.436043842 1.351853234 1.363282867 1.205502784 1.230829913 1.526590429 1.516025263 1.232097194 1 11.63222554 -10.46295141 0.067179806 4.90E-10 1.991776054 0.342205475 0.126724753 51.1112262 0.555463668 12.83193855 5.038392599 3.44E-11 10.46295141 1.991776054 LKAEPAAPPAAPS(ph)TPAPPPAVPK ddPTM_HeLa_CUDC101_4h_R1 2 LKAEPAAPPAAPSTPAPPPAVPK 23 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 LKAEPAAPPAAPS(0.5)T(0.5)PAPPPAVPK;LKAEPAAPPAAPS(0.5)T(0.5)PAPPPAVPK ; 83.776 0.00023769 27500000 2885.18 2684.79 2557.42 2325.62 2755.5 2866.41 2593.54 2403.12 2307.84 2449.1 TRUE FALSE FALSE 2546.983574 2767.505198 2695.681861 2420.468836 2552.232255 2811.738005 2693.573707 2676.681467 2212.709858 2434.532644 1.046189945 1.136770626 1.107268727 0.9942232 1.048345875 1.154939537 1.106402789 1.099464192 0.908884859 1 11.24942913 -10.43214272 0.098255784 0.820456065 1.177286973 0.480034074 0.051968543 41.69561532 0.683050518 2.28390037 0.609676075 3.70E-11 10.43214272 0.356830908 AGLVDDFEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AGLVDDFEKK 10 1 F5H608;O75947-2;O75947 F5H608 ATP5H "ATP synthase subunit d, mitochondrial" 0 1 ; AGLVDDFEK(1)K;AGLVDDFEK(1)K 167.12 0.00097902 920210 1242.14 826.67 436.49 608.72 1297.57 802.14 703.46 581.8 486.78 391.68 FALSE TRUE FALSE 1096.538232 852.1387229 460.0879697 633.5462327 1201.850846 786.840516 730.5926878 648.0297603 466.7147224 389.3502699 2.816328424 2.188617265 1.181681394 1.627188374 3.086811386 2.020906563 1.876440687 1.664387597 1.198701422 1 8.604924816 AGLVGPEFHEK ddPTM_HeLa_CUDC101_4h_R1 1 AGLVGPEFHEK 11 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 85.813 0.028456 9453900 3211.1 3334.8 3149.3 3059.7 2977.8 3079.8 3134.3 2891 3036.1 2958.1 FALSE FALSE TRUE 2834.699726 3437.541235 3319.560684 3184.487791 2758.133627 3021.057946 3255.191001 3220.099754 2910.950673 2940.50509 0.964017963 1.169030874 1.128908328 1.082973059 0.937979545 1.027394225 1.107017639 1.095083891 0.989949204 1 11.52184827 -7.302885322 24.9987309 0.983008473 1.074209105 0.343260415 0.059177529 440.6714915 265796.436 0.010894345 0.012458228 4.98E-08 7.302885322 0.091200632 AGLVIGK(ac)GGETIK ddPTM_HeLa_CUDC101_4h_R1 1 AGLVIGKGGETIK 13 1 Q96AE4;E9PEB5;Q96AE4-2;C9JSZ1;M0R0I5;A0A087WTP3;Q92945;M0QXW7;M0QYH3 Q96AE4;A0A087WTP3 FUBP1;KHSRP Far upstream element-binding protein 1;Far upstream element-binding protein 2 0 1 AGLVIGK(1)GGETIK 174.84 5.50E-07 677710 413.35 512.2 355.68 331.22 608.71 407.53 396.44 409.65 629.54 389.89 FALSE TRUE FALSE 364.8977396 527.9802749 374.9091367 344.7285833 563.806676 399.7570442 411.7308236 456.2829001 603.5900947 387.5709169 0.941499281 1.362280429 0.967330417 0.889459369 1.45471874 1.031442316 1.062336738 1.177288801 1.557366841 1 8.598316506 SWSTAT(ph)SPLGGERPFR ddPTM_HeLa_CUDC101_4h_R1 2 SWSTATSPLGGERPFR 16 1 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0;H0Y8P3;Q9UPQ0-2;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 SWS(0.056)T(0.192)AT(0.376)S(0.376)PLGGERPFR;SWS(0.001)T(0.002)AT(0.498)S(0.498)PLGGERPFR ; 226.06 1.52E-31 204440000 5132.4 4708.6 4631.6 4505 5061.9 5140.6 4397 3370.7 5006.5 5208.2 TRUE FALSE FALSE 4530.787852 4853.666385 4881.998306 4688.733372 4688.493722 5042.55162 4566.593763 3754.406863 4800.129951 5177.221395 0.875138903 0.937504119 0.942976538 0.905646681 0.905600391 0.973988021 0.882054951 0.725177963 0.927163354 1 12.3379623 -10.40880653 0.016232013 1.950029279 2.47E-06 0.299783944 0.05944469 1893.420453 4.976362368 334.3361578 266.4953577 3.90E-11 10.40880653 -1.950026813 RQGLAETAS(ph)PVAVSLR ddPTM_HeLa_CUDC101_4h_R1 1 RQGLAETASPVAVSLR 16 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154;Q15154-4;Q15154-2 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 RQGLAET(0.073)AS(0.91)PVAVS(0.017)LR 83.948 0.0068026 22471000 885.25 955.39 836.38 844.71 868.31 688.35 923.68 773.17 859.87 859.69 TRUE FALSE FALSE 781.482337 984.8244335 881.5972327 879.1609249 804.2565012 675.2208706 959.306647 861.1845475 824.4257947 854.5765256 0.914467357 1.152412223 1.031618827 1.028767932 0.941117006 0.790123354 1.122552069 1.00773251 0.964718513 1 9.739065878 -10.39998896 0.003007488 1.21E-08 1.942028531 0 0.098813199 501644.8248 244.2511443 80531.27267 77216.44095 3.98E-11 10.39998896 1.942028519 RVS(ph)VCAETYNPDEEEEDTDPR ddPTM_HeLa_CUDC101_4h_R1 4 RVSVCAETYNPDEEEEDTDPR 21 1 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 1 0 RVS(0.99)VCAET(0.01)YNPDEEEEDTDPR;RVS(0.683)VCAET(0.307)Y(0.009)NPDEEEEDTDPR;RVS(0.97)VCAET(0.03)YNPDEEEEDTDPR;RVS(1)VCAETYNPDEEEEDTDPR ;;; 109.18 1.54E-05 1595160000 4962.3 4055.25 4096.82 4161.24 4632.54 4552.11 4261.56 4391.09 4192.08 2946.12 TRUE FALSE FALSE 4380.626716 4180.187446 4318.306481 4330.953354 4290.806754 4465.286086 4425.929797 4890.953936 4019.280688 2928.596347 1.495811029 1.427368934 1.47453113 1.478849538 1.465141059 1.524718861 1.511280242 1.670067622 1.37242563 1 11.51599364 -10.38948092 0.310734161 0.480264528 1.553406323 0.361327481 0.131298277 1.315972116 0.093823172 0.537353372 0.02543856 4.08E-11 10.38948092 1.073141795 ESDQTLAALLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 6 ESDQTLAALLSPK 13 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK ;;;;; 170.42 4.80E-07 1276173000 25834.4 21191.9 19654.9 20409.6 20841.6 21760.2 19776.5 15329.4 23883.4 28147.2 TRUE FALSE FALSE 22806.13079 21844.79732 20717.50335 21241.99171 19304.15669 21345.16044 20539.28623 17074.43693 22898.91614 27979.7792 0.815093308 0.780735157 0.740445562 0.759190827 0.689932417 0.762878087 0.734076065 0.610242018 0.818409466 1 14.77209696 -10.38537656 0.145647038 1.39161204 0.595500789 0.501326424 0.067602472 4.821752477 0.124594054 0.767233208 0.122749701 4.12E-11 10.38537656 -0.796111251 Y(ph)S(ph)YS(ph)GEPWPSVS(ph)NLAK ddPTM_HeLa_CUDC101_4h_R1 1 YSYSGEPWPSVSNLAK 16 0 P11801 P11801 PSKH1 Serine/threonine-protein kinase H1 4 0 Y(0.974)S(0.967)Y(0.087)S(0.815)GEPWPS(0.161)VS(0.996)NLAK 56.551 0.025524 88404000 3838.2 3638.1 2973.7 2972.6 3205.1 3339.2 2963.8 2626.5 3786.8 4465.7 TRUE FALSE FALSE 3388.292014 3750.185549 3134.467217 3093.835477 2968.666158 3275.510323 3078.114759 2925.490143 3630.706501 4439.137818 0.763277049 0.844800433 0.706098199 0.696945128 0.668748365 0.737870834 0.693403739 0.659022149 0.817885511 1 12.11606378 -10.38096676 0.209832517 1.332154284 0.646240986 0.52547863 0.068355735 2.761532658 0.112319069 0.506879314 0.045170645 4.16E-11 10.38096676 -0.685913299 QFCQEGQPHVLEALSPPQTSGLS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 QFCQEGQPHVLEALSPPQTSGLSPSR 26 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 0 QFCQEGQPHVLEALSPPQT(0.248)S(0.248)GLS(0.425)PS(0.08)R 92.552 5.01E-06 41097000 2173.6 1933.9 1969 1691.1 2266.8 2132.5 2194.8 2006.8 2181 1097.1 TRUE FALSE FALSE 1918.813903 1993.481167 2075.450096 1760.070368 2099.58268 2091.826115 2279.454171 2235.246 2091.098257 1090.5744 1.759452544 1.827918541 1.903079785 1.613892979 1.92520811 1.918095744 2.090140911 2.049604318 1.917428335 1 10.09087248 -10.37387449 0.230796846 2.10E-18 2.0720066 0 0.308511411 2.173451393 0.100814268 1.308475494 0.100143988 4.23E-11 10.37387449 2.0720066 VATLNSEEES(ph)DPPTYK ddPTM_HeLa_CUDC101_4h_R1 4 VATLNSEEESDPPTYK 16 0 Q00341;Q00341-2;A0A024R4E5;C9JHZ8;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JK79;C9JHS7;C9JT62;C9JQ82;C9JHN6;C9JEJ8;C9JBS3;C9JMQ6 Q00341 HDLBP Vigilin 1 0 VAT(0.001)LNS(0.287)EEES(0.713)DPPTYK;VATLNSEEES(1)DPPTYK;VATLNS(0.117)EEES(0.883)DPPTYK;VATLNS(0.004)EEES(0.986)DPPT(0.009)YK ;;; 283.22 3.04E-103 357018000 14211.7 12576.3 12143.4 11525.3 12422.6 11609 11291.5 10784.6 13475.8 14461.7 TRUE FALSE FALSE 12545.82607 12963.7609 12799.90894 11995.35155 11506.20955 11387.57767 11727.01694 12012.27527 12920.32182 14375.68117 0.872711764 0.901784114 0.890386256 0.834419699 0.800394042 0.79214178 0.815753828 0.835596945 0.898762408 1 13.8113427 -10.3712667 0.153688776 1.223871429 0.760726755 0.565892166 0.039047377 5.574179368 0.154249048 0.537477976 0.07992856 4.25E-11 10.3712667 -0.463144674 ESNYFGLS(ph)PEERR ddPTM_HeLa_CUDC101_4h_R1 1 ESNYFGLSPEERR 13 1 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 ESNYFGLS(1)PEERR 74.726 0.022574 5937100 2248.3 2117.8 2317.2 2089 2396.7 2234.8 2043.2 2682.1 2547.1 1443.4 TRUE FALSE FALSE 1984.757682 2183.046908 2442.474841 2174.198449 2219.900216 2192.174913 2122.006908 2987.419423 2442.10746 1434.814593 1.383285124 1.521483625 1.702293003 1.515316655 1.547168692 1.527845427 1.478941544 2.082094396 1.702036955 1 10.48664861 -10.35581876 0.118788556 3.67E-19 2.037506619 0 0.270465192 13.84397102 0.286630328 4.907350746 1.067416457 4.41E-11 10.35581876 2.037506619 EELMSS(ph)DLEETAGSTSIPKR ddPTM_HeLa_CUDC101_4h_R1 1 EELMSSDLEETAGSTSIPKR 20 1 O00567 O00567 NOP56 Nucleolar protein 56 1 0 EELMS(0.23)S(0.77)DLEETAGSTSIPKR 144.4 1.26E-05 23812000 876.18 678.72 678.4 733.4 885.46 864.45 832.88 777.47 771.99 409.86 TRUE FALSE FALSE 773.4755086 699.6305587 715.076356 763.311222 820.1413799 847.9620565 865.0044606 865.9740422 740.1682454 407.4221345 1.898462168 1.717212933 1.755123975 1.873514366 2.01300153 2.081286177 2.12311602 2.125495816 1.816710931 1 8.670380551 -10.33928192 0.242047974 2.95E-15 2.139654206 0.269061064 0.268020049 1.877036555 0.094459929 1.215290256 0.088875083 4.58E-11 10.33928192 2.139654206 KDS(ph)FQENEDGYR ddPTM_HeLa_CUDC101_4h_R1 2 KDSFQENEDGYR 12 1 Q5VYS8-5;Q5VYS8-3;Q5VYS8-2;Q5VYS8-4;Q5VYS8-6;Q5VYS8 Q5VYS8-5 ZCCHC6 Terminal uridylyltransferase 7 1 0 KDS(1)FQENEDGYR;KDS(0.966)FQENEDGY(0.034)R ; 157.37 0.00034018 30100000 5931.4 5473.8 5259.7 5458 6152.5 6139.1 5327.9 4210.5 5014.3 5512.9 TRUE FALSE FALSE 5236.130283 5642.44129 5544.055292 5680.600831 5698.642333 6022.006896 5533.398888 4689.806301 4807.608432 5480.109026 0.955479217 1.029622087 1.011668795 1.036585368 1.039877547 1.098884505 1.009724234 0.855787043 0.877283355 1 12.41998888 -10.33536891 15.81113842 1.000003074 0.99443097 0 0.072332836 1.071016389 18114.84692 0.057628521 0.00875601 4.62E-11 10.33536891 -0.005572104 AGNNMLLVGVHGPR ddPTM_HeLa_CUDC101_4h_R1 5 AGNNMLLVGVHGPR 14 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 ;;;; ;;;; 134.18 0.0015829 13183210 7290.35 5885.06 5040.07 6393.96 6578.12 6317.67 5353.4 5562.08 5646.77 3881.87 FALSE FALSE TRUE 6435.786224 6066.371723 5312.55143 6654.733326 6092.865193 6197.170971 5559.882431 6195.244704 5414.007751 3858.780465 1.667829068 1.572095583 1.376743631 1.724569041 1.578961345 1.605992107 1.440839271 1.605492917 1.403035959 1 11.91392925 -9.310542841 0.859785258 0.971379283 1.574187287 0.387872356 0.15459359 0.206106424 0.25220841 0.083940804 0.018613289 4.89E-10 9.310542841 0.602808003 VDSEGDFS(ph)ENDDAAGDFR ddPTM_HeLa_CUDC101_4h_R1 2 VDSEGDFSENDDAAGDFR 18 0 M0QYL4;O43823 M0QYL4 AKAP8 A-kinase anchor protein 8 1 0 VDSEGDFS(1)ENDDAAGDFR;VDS(0.001)EGDFS(0.999)ENDDAAGDFR ; 132.9 2.44E-05 4037400 1177.76 922.65 1091.32 953.84 1102.26 843.76 854.32 931.97 1339.49 1405.76 TRUE FALSE FALSE 1039.704758 951.0757529 1150.32006 992.741718 1020.948476 827.6666838 887.2714086 1038.061698 1284.275655 1397.398477 0.744028833 0.680604544 0.823186857 0.710421354 0.730606547 0.592291102 0.634945166 0.742853033 0.919047556 1 10.44852776 -10.33152938 0.244770592 1.320489847 0.649974652 0.728832481 0.061785886 3.10739064 0.159422991 0.636517566 0.046060109 4.66E-11 10.33152938 -0.670515194 AFRLHS(ph)S(ph)LIQHQR ddPTM_HeLa_CUDC101_4h_R1 1 AFRLHSSLIQHQR 13 1 Q9Y2G7 Q9Y2G7 ZFP30 Zinc finger protein 30 homolog 2 0 AFRLHS(1)S(1)LIQHQR 91.789 0.017797 16594000 11527 9785.1 8308.5 7941.6 11515 9194.7 9941.3 8557.9 9341.4 9735.7 TRUE FALSE FALSE 10175.82253 10086.56733 8757.682642 8265.492775 10665.56139 9019.326417 10324.73927 9532.096744 8956.343538 9677.791623 1.051461214 1.042238532 0.904925729 0.854068066 1.102065616 0.931961213 1.066848685 0.984945442 0.925453232 1 13.24046216 -10.29970573 5.184451218 0.999459348 1.008384198 0 0.078527887 2.846225424 147.9564434 0.077907448 0.010470812 5.02E-11 10.29970573 0.00892485 QVQSLTCEVDALKGTNES(ph)LER ddPTM_HeLa_CUDC101_4h_R1 1 QVQSLTCEVDALKGTNESLER 21 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 QVQSLTCEVDALKGT(0.003)NES(0.997)LER 109.4 1.59E-05 31761000 1282.1 1137.5 939.61 1184.5 1390.9 1110.9 1203.3 1381.1 1001.4 645.05 TRUE FALSE FALSE 1131.814182 1172.545027 990.4081588 1232.80903 1288.296078 1089.711433 1249.711684 1538.318841 960.1218681 641.2132139 1.765113627 1.828635158 1.544584761 1.922619502 2.009153976 1.699452553 1.948979929 2.39907539 1.497351969 1 9.324660346 -10.28542831 0.194743847 1.02E-18 2.159321102 0.567136927 0.231119552 4.642977561 0.178153567 2.520998318 0.274395195 5.18E-11 10.28542831 2.159321102 AGPGDRDPPTRGEESR ddPTM_HeLa_CUDC101_4h_R1 1 AGPGDRDPPTRGEESR 16 2 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 0 0 53.946 0.03701 3355700 332.55 411.38 607.5 549.61 568.85 510.44 562.04 598.42 605.33 560.79 FALSE FALSE TRUE 293.5689931 424.0541302 640.3432876 572.0254714 526.8870688 500.7042075 583.7180711 666.5417139 580.3780412 557.4543961 0.526624232 0.760697437 1.148691789 1.026138596 0.945166228 0.898197612 1.047113585 1.195688326 1.04112201 1 9.122709977 -6.776951202 24.60277292 0.769033171 1.031800193 0.263977068 0.158856618 185.430412 294104.1093 0.031297949 0.041218455 1.67E-07 6.776951202 0.262767022 AGPLSGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AGPLSGKK 8 1 P17844-2;P17844;J3KTA4;J3QR02;J3KRX8;J3QRQ7;J3KTQ4;X6RLV5;J3QKN9 P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 0 1 ; AGPLSGK(1)K;AGPLSGK(1)K 155 0.0012746 34596000 12495.8 9350.5 5088.8 11115.7 8742.1 8965.7 8038.2 7632.8 4300.5 1850.17 FALSE TRUE FALSE 11031.06127 9638.577822 5363.915921 11569.04629 8097.2127 8794.69421 8348.236067 8501.687099 4123.23157 1839.165107 5.997863502 5.240735477 2.916495045 6.290379396 4.402656766 4.781894882 4.539144439 4.622579598 2.241903979 1 10.84483528 -9.38333202 1.03909583 0.936784676 4.906784666 0.644367999 0.944414173 0.221390386 0.416758819 0.660948005 0.159305366 4.14E-10 9.38333202 3.96999999 VTAEADSSS(ph)PTGILATSESK ddPTM_HeLa_CUDC101_4h_R1 2 VTAEADSSSPTGILATSESK 20 0 A0MZ66-4;A0MZ66;A0MZ66-3;A0MZ66-7;A0MZ66-8;A0MZ66-5;A0MZ66-6 A0MZ66-4 KIAA1598 Shootin-1 1 0 VTAEADS(0.001)S(0.007)S(0.985)PT(0.007)GILATSESK;VTAEADSS(0.023)S(0.737)PT(0.24)GILATSESK ; 202.81 9.64E-18 88867000 8767.5 7869.7 7353 7018.1 8359.6 7500.8 7393.3 6679.4 7897.8 9006.4 TRUE FALSE FALSE 7739.786941 8112.156129 7750.525422 7304.328453 7742.928963 7357.734737 7678.462058 7439.755897 7572.249341 8952.829532 0.864507351 0.906099697 0.865706802 0.815868148 0.864858304 0.821833445 0.857657574 0.830994924 0.845793982 1 13.128128 -10.2673627 0.267526003 1.147138537 0.830171845 0 0.053178272 1.90489016 0.114558367 0.198880777 0.013367107 5.40E-11 10.2673627 -0.316966692 APGS(ph)PAAPR ddPTM_HeLa_CUDC101_4h_R1 2 APGSPAAPR 9 0 Q5SPY9;Q9NQX5 Q5SPY9 NPDC1 Neural proliferation differentiation and control protein 1 1 0 APGS(1)PAAPR;APGS(1)PAAPR ; 97.597 0.019995 19604200 2814.3 1553.96 1776.2 1808.39 2480 1979.16 2367.8 1913.91 2351.9 2132.7 TRUE FALSE FALSE 2484.41202 1601.835666 1872.226745 1882.143961 2297.055341 1941.410821 2459.126839 2131.781778 2254.953687 2120.014606 1.171884389 0.755577656 0.883119739 0.887797639 1.083509205 0.915753512 1.159957499 1.005550515 1.063650071 1 11.04985849 -10.26370711 4.519405566 0.998229276 1.031941676 0 0.132716216 1.704870472 61.11381642 0.15103909 0.020697694 5.45E-11 10.26370711 0.0337124 AGQAVDDFIEK ddPTM_HeLa_CUDC101_4h_R1 2 AGQAVDDFIEK 11 0 P52209-2;P52209;K7EMN2;K7EM49;K7EPF6 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 0 ; ; 147.28 0.0050034 15639500 4816.5 4417.7 4805 4075.4 4723.6 4285.2 4640.6 4291 5470.6 4903.9 FALSE FALSE TRUE 4251.917171 4553.804101 5064.772834 4241.612427 4375.149439 4203.46695 4819.589496 4779.470095 5245.099553 4874.731385 0.872236198 0.934165135 1.03898501 0.870122288 0.897516005 0.862297144 0.98868822 0.980458146 1.075977144 1 12.25110701 (ac)AATLGAGT(ph)PPRPQAR ddPTM_HeLa_CUDC101_4h_R1 2 AATLGAGTPPRPQAR 15 1 A0A075B730 A0A075B730 EPPK1 1 0 AATLGAGT(1)PPRPQAR;AAT(0.001)LGAGT(0.999)PPRPQAR ; 88.092 8.71E-06 63483000 272.54 65.017 274.77 307.1 255.46 190.506 304.68 190.146 296.86 116.98 TRUE FALSE FALSE 240.5932743 67.02009671 289.6248973 319.6248654 236.6152247 186.8724155 316.4316097 211.791452 284.6233052 116.2841978 2.069010914 0.576347414 2.490664277 2.748652625 2.034801197 1.607031902 2.721191837 1.821326166 2.447652481 1 6.861511247 -10.25526585 0.252634465 3.40E-17 2.23625222 0 0.731672575 8.568206541 0.476186237 5.999647629 0.444827119 5.56E-11 10.25526585 2.23625222 AGQEHLLR ddPTM_HeLa_CUDC101_4h_R1 2 AGQEHLLR 8 0 Q16222-2;Q3KQV9;Q16222-3;Q16222;A0A087X226 Q16222-2 UAP1;UAP1L1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase;UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 0 0 ; ; 136.27 0.0045402 4920900 3961.8 3396.1 3771.1 3910.1 3454.2 3753.9 3421.1 2647.9 3898.3 3040.3 FALSE FALSE TRUE 3497.40381 3500.729816 3974.977073 4069.570779 3199.390548 3682.300612 3553.052973 2949.326233 3737.610424 3022.21616 1.157231523 1.158332042 1.315252405 1.346551856 1.058623996 1.218410735 1.175644886 0.975881961 1.236711812 1 11.56139114 -8.738830688 0.788206961 1.006378338 1.183474672 0 0.124743586 0.579208151 0.707269851 0.055245003 0.022114545 1.82E-09 8.738830688 0.177096334 VSS(ph)PLPSPSAMTDAANSQAAAK ddPTM_HeLa_CUDC101_4h_R1 2 VSSPLPSPSAMTDAANSQAAAK 22 0 A0A0U1RRM1;Q8WXI9;A0A0U1RR30 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 VS(0.043)S(0.954)PLPS(0.003)PSAMTDAANSQAAAK;VS(0.164)S(0.71)PLPS(0.119)PS(0.005)AMT(0.001)DAANS(0.001)QAAAK ; 152.57 1.32E-12 10302000 4965.8 4760.5 4022.7 4181.5 5106.6 4058.4 4376.1 3676.3 5635.6 5706.2 TRUE FALSE FALSE 4383.716452 4907.165362 4240.17933 4352.039644 4729.896292 3980.992782 4544.887643 4094.795132 5403.298183 5672.259269 0.772834288 0.865116549 0.747529182 0.767249774 0.833864615 0.701835476 0.80124822 0.721898443 0.952583076 1 12.46970776 -10.25159262 0.333614779 1.202978837 0.757039815 0.750014064 0.046440905 1.879732082 0.161416506 0.335750726 0.017062271 5.60E-11 10.25159262 -0.445939022 (ac)AADS(ph)DDGAVSAPAASDGGVSK ddPTM_HeLa_CUDC101_4h_R1 2 AADSDDGAVSAPAASDGGVSK 21 0 Q96GM8 Q96GM8 TOE1 Target of EGR1 protein 1 1 0 AADS(1)DDGAVSAPAASDGGVSK;AADS(1)DDGAVSAPAASDGGVSK ; 121.31 2.64E-07 10656700 7632 6582.3 5377.7 5634.4 6727.9 6921.9 5789.7 6367.1 6371.8 6443.3 TRUE FALSE FALSE 6737.388529 6785.092861 5668.434729 5864.195186 6231.596221 6789.87629 6013.010668 7091.904927 6109.151707 6404.974965 1.051899276 1.059347288 0.885004978 0.915568791 0.972930613 1.060094119 0.938803149 1.107249438 0.953813518 1 12.64497722 -10.25021404 4.356169377 0.999490853 1.010068518 0 0.070213751 2.66794102 89.06754184 0.071349957 0.009907479 5.62E-11 10.25021404 0.010577665 S(ph)GLSDIILGK ddPTM_HeLa_CUDC101_4h_R1 2 SGLSDIILGK 10 0 Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R165;Q9UBC2-4;K7EJR2;M0R330;M0QX30;M0R1V5 Q9UBC2-3 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 S(0.958)GLS(0.042)DIILGK;S(0.669)GLS(0.331)DIILGK ; 87.568 0.03216 27369000 3425.8 2103.39 1992.71 2177.2 2458.6 2825.5 2764.6 2323.65 2425.9 2557.2 TRUE FALSE FALSE 3024.232917 2168.192953 2100.44193 2265.995627 2277.233976 2771.608295 2871.231548 2588.164923 2325.903375 2541.989661 1.189710943 0.85295113 0.826298377 0.891425981 0.895847065 1.090330279 1.129521332 1.018165008 0.914993248 1 11.31174245 -10.23760187 4.19809282 0.998182309 1.038338146 0 0.127624216 1.554734775 48.66121334 0.152906389 0.021391666 5.79E-11 10.23760187 0.040155837 AQT(ph)PPGPSLSGS(ph)KSPCPQEK ddPTM_HeLa_CUDC101_4h_R1 2 AQTPPGPSLSGSKSPCPQEK 20 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AQT(0.989)PPGPS(0.056)LS(0.087)GS(0.606)KS(0.263)PCPQEK;AQT(0.998)PPGPS(0.131)LS(0.307)GS(0.54)KS(0.024)PCPQEK ; 71.418 0.011931 1555470000 9004 8038.1 8045.2 8315.8 8828.7 8134.3 8667.4 8124.2 8550.8 6710.8 TRUE FALSE FALSE 7948.564769 8285.744334 8480.147847 8654.954268 8177.42439 7979.15178 9001.704521 9049.026089 8198.332405 6670.883863 1.191530977 1.242075938 1.271218031 1.297422417 1.225838218 1.196116129 1.349402074 1.356495822 1.228972438 1 12.70366221 -10.22955869 0.175310659 0.665492191 1.368362349 0.208414925 0.085266592 4.54059673 0.155859667 0.739296066 0.09894637 5.89E-11 10.22955869 0.702870158 EFLT(ph)VYIK ddPTM_HeLa_CUDC101_4h_R1 1 EFLTVYIK 8 0 Q96A65 Q96A65 EXOC4 Exocyst complex component 4 1 0 EFLT(0.623)VY(0.377)IK 79.469 0.0031153 0 1010.7 749.52 648.75 645.03 1180.1 961.76 897.57 840.16 802.7 407.71 TRUE FALSE FALSE 892.2272781 772.6118228 683.8233874 671.3371115 1093.046374 943.4160304 932.1895756 935.8004184 769.6123662 405.2849228 2.201481545 1.906342376 1.687265795 1.656457158 2.696982574 2.32778467 2.300084516 2.30899391 1.898941517 1 8.662792696 -10.22551298 0.301919435 1.46E-21 2.28436212 0.243264145 0.394263534 3.181893403 0.235346874 2.657016579 0.157619393 5.95E-11 10.22551298 2.28436212 (ac)S(ph)DQEAKPSTEDLGDK ddPTM_HeLa_CUDC101_4h_R1 4 SDQEAKPSTEDLGDK 15 1 B8ZZJ0;B9A032;B8ZZN6;P63165 B8ZZJ0 SUMO1 Small ubiquitin-related modifier 1 1 0 S(0.933)DQEAKPS(0.034)T(0.034)EDLGDK;S(0.948)DQEAKPS(0.035)T(0.017)EDLGDK;S(0.914)DQEAKPS(0.065)T(0.021)EDLGDK;S(0.989)DQEAKPS(0.01)T(0.001)EDLGDK ;;; 74.237 0.00018092 252834000 19090.1 15433.1 16296 15446.8 15747.4 15460.8 14803.5 13039.5 17603.8 21198.4 TRUE FALSE FALSE 16852.38742 15908.57552 17177.01105 16076.78727 14585.74568 15165.911 15374.47595 14523.86397 16878.16391 21072.31097 0.799740828 0.75495163 0.81514605 0.762934226 0.692175893 0.71970801 0.729605593 0.689239258 0.800964068 1 14.36306092 -10.21604119 0.19672526 1.293977597 0.665923104 0.370243099 0.067980075 2.094845928 0.083821157 0.333880359 0.03779143 6.08E-11 10.21604119 -0.628054493 SRIPSPLQPEMQGT(ph)PDDEPSEPEPSPSTLIYR ddPTM_HeLa_CUDC101_4h_R1 2 SRIPSPLQPEMQGTPDDEPSEPEPSPSTLIYR 32 1 Q96GY3;K7EMY4 Q96GY3 LIN37 Protein lin-37 homolog 1 0 SRIPSPLQPEMQGT(1)PDDEPSEPEPSPSTLIYR;S(0.002)RIPS(0.012)PLQPEMQGT(0.986)PDDEPSEPEPSPSTLIYR ; 159.38 1.53E-17 87072000 2675.9 2170 2407.31 2372.8 2711.8 2145.55 2610.47 2364.25 2315.09 1674.09 TRUE FALSE FALSE 2362.235058 2236.855128 2537.45646 2469.57304 2511.755917 2104.627208 2711.156702 2633.386663 2219.66101 1664.132438 1.419499437 1.344156917 1.52479238 1.484000302 1.50934857 1.264699347 1.629171237 1.582438154 1.333824736 1 10.70055454 -10.21413029 0.268897116 0.543933573 1.540157513 0.336022494 0.142476941 2.65695545 0.165105709 0.873391681 0.061518856 6.11E-11 10.21413029 0.99622394 GAAEEAELEDS(ph)DDEEKPVK ddPTM_HeLa_CUDC101_4h_R1 2 GAAEEAELEDSDDEEKPVK 19 1 Q9UBB9;F6XM96 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 GAAEEAELEDS(1)DDEEKPVK;GAAEEAELEDS(1)DDEEKPVK ; 118.19 3.60E-05 45651000 5472.9 4545.1 4897.1 4176 4446.9 4477.3 4325 3591.4 4785 6765 TRUE FALSE FALSE 4831.374958 4685.129144 5161.852039 4346.31533 4118.861046 4391.902962 4491.816699 4000.230459 4587.760275 6724.761479 0.71844555 0.696698189 0.767588866 0.646315166 0.612491768 0.653094236 0.667951824 0.594850906 0.682219033 1 12.71526738 -10.21282238 0.238709547 1.340065198 0.602702759 0.047568759 0.106863488 1.667447268 0.087050076 0.366197474 0.030817266 6.13E-11 10.21282238 -0.737362439 MSCFSRPSMS(ph)PTPLDR ddPTM_HeLa_CUDC101_4h_R1 1 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MSCFS(0.013)RPS(0.004)MS(0.983)PTPLDR 140.77 0.0016102 80210000 1767.7 1827.4 1525.6 1613.9 2114.8 1578.3 1492.5 2263.3 1754.8 997.52 TRUE FALSE FALSE 1560.492886 1883.700028 1608.078551 1679.721818 1958.795417 1548.196557 1550.066225 2520.944923 1682.466401 991.5867067 1.573733164 1.899682615 1.621722578 1.693973716 1.975415164 1.561332505 1.563218037 2.542334328 1.696741586 1 9.95359512 -10.20358702 0.164414286 1.89E-11 2.130075784 0.156146733 0.340466358 9.224259891 0.295431473 4.340376228 0.651704032 6.26E-11 10.20358702 2.130075784 CLSTT(ph)PPGDMAHAR ddPTM_HeLa_CUDC101_4h_R1 1 CLSTTPPGDMAHAR 14 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 CLS(0.011)T(0.044)T(0.945)PPGDMAHAR 97.957 0.012431 19962000 3049.7 2692.1 2785.4 2861.9 3196.7 3027.1 2742.1 3072 3044.3 2079.2 TRUE FALSE FALSE 2692.218789 2775.04041 2935.987149 2978.620652 2960.88581 2969.363111 2847.863716 3421.704063 2918.812665 2066.832826 1.302581784 1.34265354 1.420524734 1.441152189 1.432571504 1.436673094 1.37788779 1.655530152 1.412215168 1 11.01320599 -10.18997442 0.158255559 0.43735955 1.626461417 0.123753046 0.145034343 4.161434691 0.127892302 1.06359396 0.170475647 6.46E-11 10.18997442 1.189101867 NTETSKS(ph)PEKDVPMVEK ddPTM_HeLa_CUDC101_4h_R1 2 NTETSKSPEKDVPMVEK 17 2 O14617;O14617-5;A0A2R8Y611;O14617-3;O14617-2 O14617 AP3D1 AP-3 complex subunit delta-1 1 0 NT(0.003)ET(0.112)S(0.345)KS(0.54)PEKDVPMVEK;NT(0.001)ET(0.071)S(0.125)KS(0.804)PEKDVPMVEK ; 98.552 0.0030982 117757000 4956.2 4192.3 3656.4 4456.2 3897.1 4477.4 3547 3527.5 4232.9 5086.5 TRUE FALSE FALSE 4375.241749 4321.459794 3854.076044 4637.943097 3609.618697 4392.001055 3683.808978 3929.056341 4058.41807 5056.245272 0.865314381 0.854677644 0.762240721 0.917270197 0.713893117 0.868628957 0.728566116 0.777069966 0.80265451 1 12.30385073 -10.18245212 0.147538647 1.264831464 0.705573409 0.005086666 0.084498684 9.034468228 0.255963453 1.033353268 0.184033692 6.57E-11 10.18245212 -0.559258055 RRGS(ph)S(ph)GSVDETLFALPAASEPVIR ddPTM_HeLa_CUDC101_4h_R1 2 RRGSSGSVDETLFALPAASEPVIR 24 2 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 2 0 RRGS(0.665)S(0.665)GS(0.665)VDET(0.004)LFALPAASEPVIR;RRGS(0.665)S(0.665)GS(0.665)VDET(0.005)LFALPAASEPVIR ; 65.901 0.01542 15528000 3028.4 2365.68 1941.79 1765.53 3124.2 2325.91 2552.6 2021.98 2254.4 2398.94 TRUE FALSE FALSE 2673.415543 2438.563797 2046.769041 1837.535945 2893.73399 2281.547142 2651.054637 2252.15403 2161.472678 2384.670998 1.121083598 1.022599679 0.858302484 0.770561619 1.21347305 0.95675552 1.111706663 0.944429664 0.906402887 1 11.21957452 -10.1598834 3.423943186 0.998990665 1.030649738 0 0.129373205 1.845200125 39.95818424 0.119998898 0.018524666 6.92E-11 10.1598834 0.031659073 SHSESASPSALSS(ph)SPNNLSPTGWSQPK ddPTM_HeLa_CUDC101_4h_R1 1 SHSESASPSALSSSPNNLSPTGWSQPK 27 0 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 SHSESASPSALS(0.026)S(0.476)S(0.476)PNNLS(0.019)PT(0.003)GWSQPK 111.56 3.24E-08 20856000 2530.8 1378.1 830.54 808.49 2927.5 1877.6 1570.2 1395.5 1963.6 1641.3 TRUE FALSE FALSE 2234.14346 1420.557628 875.4415046 841.4637168 2711.544157 1841.787908 1630.76314 1554.358079 1882.659577 1631.537475 1.369348541 0.870686484 0.536574561 0.515748936 1.661956406 1.128866445 0.999525396 0.952695297 1.153917459 1 10.67201641 -10.15708234 3.407011695 0.996980972 1.094109032 0 0.338621747 1.694978867 36.36195324 0.336202784 0.052213698 6.96E-11 10.15708234 0.09712806 S(ph)SSDPPAVHPPLPPLR ddPTM_HeLa_CUDC101_4h_R1 2 SSSDPPAVHPPLPPLR 16 0 O43150 O43150 ASAP2 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2" 1 0 S(0.458)S(0.085)S(0.458)DPPAVHPPLPPLR;S(0.459)S(0.082)S(0.459)DPPAVHPPLPPLR ; 97.214 0.0034454 23613000 6740.2 6177.1 5560.6 5792.1 6263.4 5968.3 5409.7 5770.6 6562.6 6620.3 TRUE FALSE FALSE 5950.123973 6367.409129 5861.222856 6028.326874 5801.36146 5854.464621 5618.353941 6427.501778 6292.08685 6580.922161 0.904147447 0.967555758 0.890638532 0.916030721 0.881542331 0.889611589 0.853733535 0.9766871 0.956110207 1 12.68407404 -10.11753081 0.338963871 1.075137944 0.898398141 0.315243089 0.037895325 3.281806333 0.310875396 0.23254936 0.013649734 7.63E-11 10.11753081 -0.176739803 GGSGSHNWGTVKDELTES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 GGSGSHNWGTVKDELTESPK 20 1 Q8NC51-2;Q8NC51 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 GGSGSHNWGT(0.005)VKDELT(0.014)ES(0.981)PK 69.07 0.005225 23305000 1186.3 1287.8 1215.1 1072.4 1445.5 1463.4 1048.4 804.19 1488.9 1218.4 TRUE FALSE FALSE 1047.243712 1327.475592 1280.791981 1116.137107 1338.868345 1435.488083 1088.837139 895.735739 1427.526912 1211.152903 0.864666806 1.096042943 1.057498173 0.921549298 1.105449479 1.185224492 0.899008818 0.739572796 1.178651274 1 10.24216529 -10.11625061 3.087404223 1.001055626 0.961820582 0 0.139422795 1.645406387 28.73190065 0.120679686 0.019562421 7.65E-11 10.11625061 -0.039235044 QEASES(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 QEASESPVK 9 0 Q01167-2;Q01167;E9PPI7;Q01167-3 Q01167-2 FOXK2 Forkhead box protein K2 1 0 QEAS(0.001)ES(0.999)PVK;QEAS(0.013)ES(0.987)PVK ; 132.56 0.0028605 30517000 12855.9 6445.5 10802.6 11050.8 7537.6 7261.6 7993.4 4371.8 11267 16225.7 TRUE FALSE FALSE 11348.95089 6644.078215 11386.62123 11501.49939 6981.566265 7123.097079 8301.708116 4869.468041 10802.56949 16129.18881 0.703628125 0.411928851 0.705963664 0.713086041 0.432852907 0.441627732 0.514700907 0.301904088 0.669752807 1 13.97738626 -10.11561394 0.095967809 1.92030661 1.54E-13 0.413975744 0.149826526 16.52406954 0.295187741 5.025438073 1.577886964 7.66E-11 10.11561394 -1.92030661 GSLAS(ph)LDSLR ddPTM_HeLa_CUDC101_4h_R1 1 GSLASLDSLR 10 0 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-19;O60716-4;O60716-6;O60716-11;O60716-13;O60716-21;O60716-24;O60716-9;O60716-17;O60716-16;O60716-10;O60716-23;O60716-15;O60716-18;O60716-12;O60716-22;O60716-20;O60716-14;O60716-27;O60716-29;O60716-25;O60716-26;O60716-31;O60716-32;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 1 0 GS(0.002)LAS(0.915)LDS(0.082)LR 84.31 0.037069 2973800 2908.8 2891.6 2501.3 2324 2956.4 2754.6 2576.1 2084.3 2609.9 3347.1 TRUE FALSE FALSE 2567.834873 2980.686769 2636.527844 2418.782765 2738.312262 2702.060594 2675.46104 2321.568287 2502.318817 3327.1913 0.771772538 0.895856745 0.792418471 0.72697436 0.823010165 0.812114589 0.804119991 0.697756179 0.752081438 1 11.7000891 -10.11435285 0.396402297 1.156948907 0.779476316 0 0.093354458 1.770822096 0.222229925 0.306993003 0.015763925 7.69E-11 10.11435285 -0.377472591 PAAMISQPPT(ph)PPTGQPVREDAK ddPTM_HeLa_CUDC101_4h_R1 2 PAAMISQPPTPPTGQPVREDAK 22 1 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 PAAMIS(0.001)QPPT(0.987)PPT(0.012)GQPVREDAK;PAAMIS(0.005)QPPT(0.962)PPT(0.033)GQPVREDAK ; 86.617 0.0007534 16188000 4411 4178.4 3555.1 3840.9 3091.3 3421.2 3599.6 3122.3 4084.4 5059.9 TRUE FALSE FALSE 3893.949267 4307.131551 3747.29946 3997.548504 2863.260958 3355.94631 3738.437778 3477.730011 3916.039303 5029.80349 0.774175229 0.856322033 0.745019058 0.794772303 0.569259011 0.667212212 0.743257224 0.691424629 0.778567058 1 12.29628632 -10.10941889 0.190419844 1.302600897 0.632821031 0.280517446 0.092449211 4.970581406 0.199280306 0.825544724 0.106735939 7.77E-11 10.10941889 -0.669779866 LSFDS(ph)ATFMESEK ddPTM_HeLa_CUDC101_4h_R1 2 LSFDSATFMESEK 13 0 A0A087WWW8;Q9Y6J0-2;Q9Y6J0 A0A087WWW8 CABIN1 Calcineurin-binding protein cabin-1 1 0 LSFDS(0.606)AT(0.394)FMESEK;LSFDS(0.5)AT(0.5)FMESEK ; 103.26 0.014912 18342800 1852.5 1441.61 1553.18 1714.64 1613.14 1632.59 1854.29 1631.83 1806.01 765.98 TRUE FALSE FALSE 1635.352758 1486.024295 1637.149609 1784.570431 1494.141876 1601.451066 1925.810586 1817.590931 1731.565503 761.4239169 2.147755963 1.951638584 2.150115819 2.343727838 1.962299637 2.103231893 2.52922261 2.387094614 2.274114938 1 9.572556077 -10.10557635 0.313590397 1.23E-10 2.325545352 0 0.434094755 1.36814735 0.114375798 1.191376767 0.077205367 7.84E-11 10.10557635 2.325545352 QEPES(ph)EEEEEEKQEK ddPTM_HeLa_CUDC101_4h_R1 2 QEPESEEEEEEKQEK 15 1 P49756 P49756 RBM25 RNA-binding protein 25 1 0 QEPES(1)EEEEEEKQEK;QEPES(1)EEEEEEKQEK ; 125.23 0.00045043 402060000 8283.1 7062.9 6815.7 7575.5 6479.5 7032.9 6081.2 6540.4 7705.7 8488.1 TRUE FALSE FALSE 7312.167574 7280.499577 7184.177358 7884.461634 6001.520194 6898.75915 6315.753921 7284.932699 7388.067784 8437.612404 0.866615723 0.862862529 0.851446714 0.934442264 0.711281807 0.817619822 0.748523826 0.863387929 0.875611184 1 13.0426191 -10.10080653 0.167671779 1.208317001 0.752903963 0.255746343 0.067597946 8.136066384 0.278248397 0.835219551 0.130827265 7.93E-11 10.10080653 -0.455413038 S(ph)ESETSTMAAK ddPTM_HeLa_CUDC101_4h_R1 1 SESETSTMAAK 11 0 A0A087WVF1;Q96B23-2;Q96B23 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 S(1)ESETSTMAAK 110.98 0.0067125 16127000 2374.8 2188.9 1996.8 1841.9 2439 2069.4 2147.7 1719.1 2184 2429.1 TRUE FALSE FALSE 2096.429544 2256.337415 2104.753048 1917.020643 2259.079829 2029.929643 2230.537508 1914.795395 2093.974596 2414.651605 0.868212018 0.934436011 0.871659101 0.7939119 0.935571751 0.840671854 0.923751279 0.792990339 0.86719533 1 11.23759933 -10.09809925 0.353208923 1.100569973 0.861422453 0 0.064009745 2.984069842 0.30684968 0.295950292 0.017082449 7.98E-11 10.09809925 -0.23914752 IMSS(ph)YLMDS(ph)NYIDPK ddPTM_HeLa_CUDC101_4h_R1 1 IMSSYLMDSNYIDPK 15 0 P09017 P09017 HOXC4 Homeobox protein Hox-C4 2 0 IMS(0.133)S(0.847)Y(0.391)LMDS(0.531)NY(0.098)IDPK 61.56 0.032081 5833800 1330.1 1147.3 1177.1 1048.1 1228.8 998.87 996.11 1013.4 1162.3 1349.8 TRUE FALSE FALSE 1174.187694 1182.646953 1240.737587 1090.846048 1138.153872 979.818219 1034.530296 1128.76136 1114.389502 1341.77133 0.875102686 0.881407232 0.924701221 0.812989534 0.848247274 0.730242328 0.771018335 0.841247189 0.830536081 1 10.38992311 -10.08187666 0.088028618 1.346235961 0.614069346 0.148708058 0.066585473 20.98673837 0.345844858 2.343239351 0.81438737 8.28E-11 10.08187666 -0.732166615 EPTGVEENKTDSLFVLPS(ph)RDDATPVRDEPMDAESITFK ddPTM_HeLa_CUDC101_4h_R1 1 EPTGVEENKTDSLFVLPSRDDATPVRDEPMDAESITFK 38 3 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 EPT(0.001)GVEENKT(0.005)DS(0.013)LFVLPS(0.464)RDDAT(0.464)PVRDEPMDAES(0.044)IT(0.01)FK 41.591 0.01329 21912000 1382.7 1350.4 1255.9 1169.6 1414 1210.3 1130.1 1273.2 1316.4 1266.5 TRUE FALSE FALSE 1220.622002 1392.004223 1323.797753 1217.301343 1309.692037 1187.215544 1173.688336 1418.135942 1262.137435 1258.966802 0.969542644 1.105671906 1.051495362 0.966905038 1.040291162 0.943007824 0.932263134 1.126428385 1.002518441 1 10.29802453 -10.07873771 0.003282836 7.14E-05 1.980956106 0 0.063495576 206844.73 122.7998731 37812.37421 36297.08566 8.34E-11 10.07873771 1.980884702 SASNGSKT(ph)DTEEEEEQQQQQK ddPTM_HeLa_CUDC101_4h_R1 1 SASNGSKTDTEEEEEQQQQQK 21 1 Q9UGU0-2;Q9UGU0;A9JX13 Q9UGU0-2 TCF20 Transcription factor 20 1 0 SAS(0.002)NGS(0.121)KT(0.438)DT(0.438)EEEEEQQQQQK 75.334 0.0036538 10964000 1635.5 1406.6 1652 1406.2 1269 1307.2 1305.2 1551.8 1991.5 1788.8 TRUE FALSE FALSE 1443.789169 1449.935679 1741.312117 1463.550914 1175.388398 1282.267338 1355.542001 1728.450639 1909.409527 1778.160138 0.811956774 0.815413442 0.979277445 0.823070365 0.661013805 0.721120281 0.762328416 0.97204442 1.073811906 1 10.79616954 -10.06828072 0.33087513 1.148140136 0.793487406 0.447349936 0.095821097 4.745840312 0.442775136 0.658010658 0.04198604 8.55E-11 10.06828072 -0.35465273 KYS(ph)ASSGGLCEEATAAK ddPTM_HeLa_CUDC101_4h_R1 1 KYSASSGGLCEEATAAK 17 1 Q9UHV7;J3QRB7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 1 0 KY(0.034)S(0.858)AS(0.08)S(0.028)GGLCEEATAAK 76.21 0.0093576 11959000 3524.1 3430.5 3075.8 3253.7 3646.2 3391.5 3593.5 3784.3 2952.2 1797.5 TRUE FALSE FALSE 3111.01034 3536.189639 3242.087052 3386.39995 3377.22709 3326.812788 3732.102499 4215.089415 2830.509066 1786.80839 1.741099022 1.979053635 1.814457034 1.895222772 1.890089116 1.861874394 2.088697658 2.359004714 1.584114493 1 10.80316922 -10.06273407 0.200014557 5.46E-18 2.237899046 0.573629575 0.219947992 2.60311466 0.113628208 1.502715097 0.187548639 8.65E-11 10.06273407 2.237899046 LSNGNSRGS(ph)VS(ph)KSSR ddPTM_HeLa_CUDC101_4h_R1 1 LSNGNSRGSVSKSSR 15 2 Q5T5P2;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P1;A0A1B0GU17;A0A0U1RQK8 Q5T5P2 KIAA1217 Sickle tail protein homolog 2 0 LSNGNSRGS(0.925)VS(0.846)KS(0.185)S(0.043)R 105.58 0.0098053 136080000 4289.3 3817.5 3095.7 3426.7 3885.5 3810 3354.9 3598.8 3946.5 3665.7 TRUE FALSE FALSE 3786.514756 3935.11265 3263.062906 3566.455637 3598.874406 3737.330598 3484.299617 4008.472845 3783.8236 3643.896253 1.039139013 1.079918959 0.895487324 0.978747854 0.987644586 1.02564133 0.956201652 1.100051309 1.038400475 1 11.83126617 -10.0601455 2.738448435 0.999723931 1.012498293 0 0.057582112 2.186400482 29.86587492 0.046923135 0.007994226 8.71E-11 10.0601455 0.012774362 CSDVSELSS(ph)SPPGPYHQEPYVCKPEER ddPTM_HeLa_CUDC101_4h_R1 2 CSDVSELSSSPPGPYHQEPYVCKPEER 27 1 Q9Y478;F5H610;F5H2X8 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 0 CS(0.001)DVS(0.006)ELS(0.137)S(0.41)S(0.41)PPGPY(0.035)HQEPYVCKPEER;CS(0.001)DVS(0.006)ELS(0.14)S(0.426)S(0.426)PPGPY(0.001)HQEPYVCKPEER ; 59.789 0.0016524 93651000 2567.5 1949.06 2044.13 2092.84 2710.4 2288.9 2129.8 2087.9 2348.94 1518.81 TRUE FALSE FALSE 2266.541542 2009.108228 2154.641851 2178.195061 2510.459192 2245.243046 2211.947099 2325.578096 2252.115699 1509.776051 1.50124354 1.330732613 1.427126792 1.442727258 1.662802368 1.487136483 1.465082916 1.540346395 1.491688584 1 10.56011885 -10.05400625 0.366690474 0.641516528 1.519013195 0 0.17412166 1.287335647 0.145006413 0.481593759 0.028422082 8.83E-11 10.05400625 0.877496667 KVVDYSQFQES(ph)DDADEDYGR ddPTM_HeLa_CUDC101_4h_R1 17 KVVDYSQFQESDDADEDYGR 20 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(0.999)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYS(0.001)QFQES(0.999)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR ;;;;;;;;;;;;;;;; 152.66 7.85E-06 12165375000 55676.2 49044.8 48625.5 46187.06 50145.4 48439.25 46493.1 45485.1 55925.8 54621.6 TRUE FALSE FALSE 49149.92024 50555.81216 51254.34161 48070.76794 46446.27375 47515.35201 48286.35444 50662.93993 53620.51485 54296.70829 0.905209943 0.931102709 0.943967751 0.885334847 0.855416013 0.875105573 0.889305373 0.933075715 0.987546327 1 15.72857712 -10.05236521 0.293496877 1.08253855 0.887061149 0.685824709 0.025301892 2.918283971 0.224917538 0.201178922 0.014952673 8.86E-11 10.05236521 -0.195477401 LTVS(ph)DGESGEEK ddPTM_HeLa_CUDC101_4h_R1 1 LTVSDGESGEEK 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LTVS(0.958)DGES(0.042)GEEK 117.03 0.0039875 7726800 2366 1853.3 2140.9 1662.5 2081.5 1787.5 1506.9 1701.6 2327.1 2926.9 TRUE FALSE FALSE 2088.661067 1910.397976 2256.64353 1730.303936 1927.951892 1753.406416 1565.021638 1895.303266 2231.175953 2909.490669 0.717878593 0.656609075 0.77561463 0.594710254 0.662642404 0.602650641 0.537902271 0.651420981 0.766861354 1 11.5065509 -10.04840542 0.21296359 1.35942353 0.550676587 0.479011833 0.089243421 2.286722156 0.109399374 0.501233846 0.057802296 8.95E-11 10.04840542 -0.808746943 EES(ph)DGEYDEFGRK ddPTM_HeLa_CUDC101_4h_R1 2 EESDGEYDEFGRK 13 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 EES(0.999)DGEY(0.001)DEFGRK;EES(1)DGEYDEFGRK ; 100.11 0.0084856 152824000 3122 2567.5 2124.02 2545.6 2502.8 2928.5 2459.6 2354.1 3266.9 2566.7 TRUE FALSE FALSE 2756.043893 2646.601632 2238.850946 2649.420571 2318.17343 2872.643742 2554.467596 2622.081228 3132.236999 2551.433154 1.080194434 1.037300008 0.877487596 1.038404854 0.90857698 1.125894181 1.001189309 1.027689565 1.227638276 1 11.31709213 -10.04168206 2.639540868 0.999457383 1.026580552 0 0.100613285 1.360558981 17.2476242 0.060025114 0.01038171 9.08E-11 10.04168206 0.027123169 GNAEGS(ph)SDEEGKLVIDEPAKEK ddPTM_HeLa_CUDC101_4h_R1 2 GNAEGSSDEEGKLVIDEPAKEK 22 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 GNAEGS(0.757)S(0.243)DEEGKLVIDEPAKEK;GNAEGS(0.877)S(0.123)DEEGKLVIDEPAKEK ; 63.372 0.0041593 320620000 7238.7 6820.2 5868.4 6476.6 6441.6 6637 5660.3 5655.3 6745.6 8647.5 TRUE FALSE FALSE 6390.190559 7030.322278 6185.663455 6740.743742 5966.416001 6510.410283 5878.619667 6299.076492 6467.543513 8596.064285 0.743385618 0.817853618 0.719592508 0.784166279 0.694086945 0.757371056 0.683873395 0.732786108 0.752384265 1 13.06946056 -10.03936802 0.339889034 1.198267662 0.717271807 0 0.086196289 1.070352103 0.106229971 0.205430931 0.013207669 9.13E-11 10.03936802 -0.480995855 AGTEDEEEEEEGRR ddPTM_HeLa_CUDC101_4h_R1 2 AGTEDEEEEEEGRR 14 1 O95456;O95456-2;F8WBH7 O95456 PSMG1 Proteasome assembly chaperone 1 0 0 ; ; 145.83 0.0003697 23796000 3822.8 3137.1 3914.9 3336 3029.9 3098.6 3592.1 2517.6 3188.8 3685 FALSE FALSE TRUE 3374.697179 3233.750333 4126.551336 3472.056499 2806.390313 3039.499368 3730.6485 2804.193408 3057.356314 3663.081456 0.921272764 0.882795092 1.12652459 0.947851294 0.766128285 0.829765705 1.018445411 0.765528542 0.834640548 1 11.83884207 -5.970057606 21.33183396 0.968870416 0.856361653 0.21053953 0.098431321 42.38399193 30194.31936 0.012909322 0.023399353 1.07E-06 5.970057606 -0.112508762 DMAECSTPLPEDCS(ph)PTHSPR ddPTM_HeLa_CUDC101_4h_R1 2 DMAECSTPLPEDCSPTHSPR 20 0 Q12802-4;Q12802;Q12802-2;A0A087WTD7;A8MYJ1 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 DMAECSTPLPEDCS(0.945)PT(0.055)HSPR;DMAECSTPLPEDCS(0.971)PT(0.029)HS(0.001)PR ; 145.14 1.46E-05 39566000 4041.6 3073.5 3287 3466.7 3650.2 3918.1 3687.3 4427.1 3263 1866.28 TRUE FALSE FALSE 3567.849775 3168.190892 3464.705163 3608.08701 3380.932018 3843.36877 3829.520396 4931.063169 3128.497759 1855.179284 1.923183277 1.707754566 1.867585086 1.944872413 1.822428726 2.071696684 2.064231975 2.657998185 1.686358718 1 10.8573429 -10.03851832 0.186071059 6.30E-23 2.363413406 0.518704792 0.271078455 4.429636533 0.177552553 2.557592291 0.361031711 9.15E-11 10.03851832 2.363413406 QGSPS(ph)QSLVACECEASK ddPTM_HeLa_CUDC101_4h_R1 1 QGSPSQSLVACECEASK 17 0 Q4AC94 Q4AC94 C2CD3 C2 domain-containing protein 3 1 0 QGS(0.214)PS(0.754)QS(0.032)LVACECEASK 111.77 0.00091833 7280000 903.9 744.63 532.09 959.38 1151.9 764.66 768 875.44 937.47 391.84 TRUE FALSE FALSE 797.9462122 767.5711677 560.8563949 998.5076632 1066.926632 750.0753845 797.6220173 975.0965509 898.8270898 389.5093183 2.048593384 1.970610539 1.439904949 2.56350135 2.739155604 1.925693043 2.047761067 2.503397237 2.307588157 1 8.605514032 -10.03799993 0.264711326 2.56E-15 2.351232486 0 0.528700226 3.699066712 0.244046317 2.811708143 0.241737977 9.16E-11 10.03799993 2.351232486 KVQVAALQAS(ph)PPLDQDDR ddPTM_HeLa_CUDC101_4h_R1 4 KVQVAALQASPPLDQDDR 18 1 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IU26;B1AN86;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR ;;; 124.1 4.33E-05 558955000 19078 17188.6 16097.3 15617.7 18733.5 17867.8 15605.5 15364.3 18447.6 18130.4 TRUE FALSE FALSE 16841.70576 17718.16039 16967.56873 16254.65731 17351.56703 17527.00148 16207.40936 17113.30981 17687.18212 18022.55957 0.934479128 0.983110103 0.941462763 0.90190615 0.962769298 0.972503457 0.899284549 0.949549354 0.981391242 1 14.1375163 -10.03179936 0.431072603 1.038353518 0.939461812 0.336614453 0.026241353 2.763668232 0.427494056 0.13337017 0.007299841 9.29E-11 10.03179936 -0.098891706 AGTQIENIDEDFRDGLK ddPTM_HeLa_CUDC101_4h_R1 2 AGTQIENIDEDFRDGLK 17 1 O43707;F5GXS2;O43707-3;K7EP19 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 226.7 6.19E-33 39524000 3513.8 3360.8 3081.9 3067.1 3139.2 2834.5 2872.3 2920.9 3499.1 3768 FALSE FALSE TRUE 3101.917691 3464.342264 3248.516836 3192.189595 2907.62747 2780.436635 2983.085573 3253.403449 3354.865617 3745.587768 0.828152451 0.924912852 0.867291607 0.852253316 0.776280693 0.742323183 0.796426558 0.868596239 0.895684689 1 11.87097641 -13.52287875 0.174873816 1.72959813 0.782204769 0.392294249 0.055647113 25.54823038 0.288318075 6.343358745 0.072897002 3.00E-14 13.52287875 -0.947393361 AGTQIENIEEDFR ddPTM_HeLa_CUDC101_4h_R1 1 AGTQIENIEEDFR 13 0 P12814-4;P12814-3;P12814;P12814-2;G3V2N5;A0A494C1A0;P35609;P35609-2;G3V5M4;G3V380;A0A494C166;A0A087WSZ2;Q08043;A0A494C033;A0A494C0Q3 P12814-4 ACTN1;ACTN2;ACTN3 Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 0 0 151.78 0.0014887 2179200 940.18 905.64 686.12 658.41 1085.2 779.11 799.21 601.2 1030.4 792.41 FALSE FALSE TRUE 829.9735256 933.541695 723.2137226 685.2628057 1005.146958 764.2497748 830.0357974 669.6381779 987.9264759 787.6967101 1.053671439 1.185153731 0.91813729 0.869957684 1.276058342 0.970233549 1.053750494 0.850121842 1.254196524 1 9.62149644 -4.257354028 23.66031463 1.033424997 0.850121691 0.156083668 0.132882983 237.2896504 1374140.375 0.014468667 0.145678212 5.53E-05 4.257354028 -0.183303307 AGTQIENIEEDFRDGLK ddPTM_HeLa_CUDC101_4h_R1 1 AGTQIENIEEDFRDGLK 17 1 P12814-4;P12814-3;P12814;P12814-2;G3V2N5;G3V5M4;G3V380 P12814-4 ACTN1 Alpha-actinin-1 0 0 246.38 9.33E-56 6743700 1965.8 1802.6 1993.5 1859.1 2225.3 2170.6 1960.1 2037.6 2286.5 2168.4 FALSE FALSE TRUE 1735.371904 1858.135969 2101.27464 1934.922134 2061.144052 2129.199421 2035.701714 2269.552148 2192.249502 2155.50226 0.805089345 0.862043155 0.974842235 0.897666483 0.956224491 0.98779735 0.944421053 1.05291105 1.017048111 1 11.07380836 -4.656851625 0.733304172 0.906251172 1.062450349 0.170066198 0.065170884 2.208001633 1.154178604 0.013438703 0.252727722 2.20E-05 4.656851625 0.156199177 AGVLAGHDNR ddPTM_HeLa_CUDC101_4h_R1 2 AGVLAGHDNR 10 0 Q9HAV0;P62879;B3KVK2;E7EP32;P62879-2;P62873-2;P62873 Q9HAV0 GNB4;GNB2;GNB1 Guanine nucleotide-binding protein subunit beta-4;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 0 0 ; ; 100.48 0.0014397 3146100 11767.2 6080.5 4556.2 10115.4 5611.2 6839.1 6565.8 3093.2 4313.4 2818.4 FALSE FALSE TRUE 10387.86665 6267.832998 4802.521954 10527.94973 5197.272955 6708.655562 6819.045105 3445.317385 4135.599826 2801.636031 3.707785928 2.237204593 1.714184819 3.757786385 1.855084992 2.394549287 2.433951102 1.229751954 1.476137435 1 11.45205383 -4.258492971 22.67250834 2.347954016 1.229750691 0.120542404 0.841441016 151.111598 1162544.899 0.145120776 1.331500997 5.51E-05 4.258492971 -1.118203325 AGVLAHLEEER ddPTM_HeLa_CUDC101_4h_R1 4 AGVLAHLEEER 11 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 0 ;;; ;;; 166.86 9.79E-06 113413900 28594.9 23879.9 22492.9 22753.9 26612.2 24289.7 23902.6 22838.6 25265.6 24120.8 FALSE FALSE TRUE 25243.04917 24615.61141 23708.93421 23681.90239 24649.07102 23826.41444 24824.53129 25438.45391 24224.14127 23977.32841 1.052788231 1.026620272 0.988806334 0.987678944 1.028015741 0.993705972 1.035333498 1.060937794 1.010293593 1 14.5493833 -9.801264445 1.816691501 0.999938228 1.025776986 0.044240381 0.024484551 0.672621524 4.019715147 0.020172898 0.004210878 1.58E-10 9.801264445 0.025838758 QSPLT(ph)YEDHGAPFAGHLPR ddPTM_HeLa_CUDC101_4h_R1 1 QSPLTYEDHGAPFAGHLPR 19 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 QS(0.008)PLT(0.991)Y(0.001)EDHGAPFAGHLPR 121.35 7.83E-05 38256000 1476.3 1038.3 1297.9 1218.4 1385 1125 999.63 996.69 1237 1911.4 TRUE FALSE FALSE 1303.250352 1070.288792 1368.0684 1268.091618 1282.831309 1103.542499 1038.186064 1110.149161 1186.010336 1900.030908 0.68591008 0.563300727 0.720024287 0.667405784 0.67516339 0.580802394 0.546404829 0.584279527 0.624205812 1 10.89180717 -10.01849818 0.267348464 1.324696768 0.568787885 0 0.130440246 1.728971918 0.116915029 0.42573159 0.036843946 9.58E-11 10.01849818 -0.755908883 APS(ph)PTGPALISGAS(ph)PVHCAADGTVELK ddPTM_HeLa_CUDC101_4h_R1 1 APSPTGPALISGASPVHCAADGTVELK 27 0 E7EWD6;Q76L83 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 2 0 APS(0.963)PT(0.046)GPALIS(0.048)GAS(0.934)PVHCAADGT(0.008)VELK 81.388 4.80E-05 25693000 1357.3 1288.8 1008.4 1136.6 1241.5 1633.9 1091.2 1263.2 1468.6 1026.7 TRUE FALSE FALSE 1198.199352 1328.5064 1062.917154 1182.955461 1149.917018 1602.73608 1133.28795 1406.997582 1408.063686 1020.593143 1.174022538 1.3017003 1.041470014 1.159086233 1.126714427 1.570396677 1.110420894 1.378607716 1.379652309 1 9.995192138 -10.01778026 0.039595785 1.35E-08 2.070599198 0 0.179515299 228.518216 1.683591689 55.45944328 34.36101505 9.60E-11 10.01778026 2.070599184 AGVQADEDEDGDEKDEK ddPTM_HeLa_CUDC101_4h_R1 1 AGVQADEDEDGDEKDEK 17 1 P26358;P26358-2 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 0 0 91.932 0.0075091 10303000 967.32 953.2 949.81 894.39 1167.8 1095.8 1071.4 574.8 1176.5 1331.6 FALSE FALSE TRUE 853.932216 982.5669622 1001.159602 930.8670901 1081.653721 1074.899441 1112.724257 640.2329086 1128.004172 1323.679584 0.645120032 0.742299703 0.756345881 0.703242009 0.81715676 0.812054106 0.840629613 0.483676651 0.852173128 1 10.37033822 -9.403509387 1.07342552 1.003471223 0.728424004 0.330732605 0.107102628 0.333607086 0.673687742 0.070479222 0.017034237 3.95E-10 9.403509387 -0.275047219 KEDLEAEEEYSSLCELLGSPEQRPGMQDPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 KEDLEAEEEYSSLCELLGSPEQRPGMQDPLSPK 33 2 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4;A8MXE8;Q7Z5J4-4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 0 KEDLEAEEEY(0.001)S(0.001)S(0.003)LCELLGS(0.048)PEQRPGMQDPLS(0.947)PK;KEDLEAEEEYS(0.001)S(0.002)LCELLGS(0.079)PEQRPGMQDPLS(0.917)PK ; 57.073 0.00046662 12547700 2141.37 1793.03 1600.94 1858.76 2237.8 2127.53 1980.28 1663.08 2347.4 1110.56 TRUE FALSE FALSE 1890.361855 1848.271129 1687.491659 1934.568267 2072.721952 2086.95091 2056.660063 1852.398305 2250.639178 1103.95434 1.71235511 1.674227876 1.528588274 1.752398806 1.87754319 1.890432271 1.862993775 1.677966414 2.038706763 1 10.10846479 -10.01258147 0.313701762 0.410136762 1.837068431 0 0.343419781 1.276825729 0.11205199 0.677937814 0.048786448 9.71E-11 10.01258147 1.426931668 MESSFGSPSKQES(ph)SESLPK ddPTM_HeLa_CUDC101_4h_R1 1 MESSFGSPSKQESSESLPK 19 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 MESSFGS(0.009)PS(0.172)KQES(0.372)S(0.372)ES(0.075)LPK 63.918 0.013967 99945000 1985.2 1781.2 1611.1 1846.3 1686.7 1366.3 1604.6 1619.8 1795.4 2083.3 TRUE FALSE FALSE 1752.497865 1836.076661 1698.200939 1921.600094 1562.275501 1340.240104 1666.48996 1804.191485 1721.392852 2070.908439 0.846245943 0.886604461 0.820027051 0.927902006 0.754391393 0.647174969 0.804714457 0.871207751 0.831225958 1 11.01604805 -10.00922619 0.192195605 1.194679539 0.751010867 0.087201405 0.08690086 7.928507868 0.33581184 0.881663704 0.121550678 9.79E-11 10.00922619 -0.443668673 MKYYIEY(ph)MES(ph)TR ddPTM_HeLa_CUDC101_4h_R1 1 MKYYIEYMESTR 12 1 B2WTI3;B2WTI4;K7EJU9;Q6NYC1-2;Q6NYC1;Q6NYC1-3 B2WTI3 JMJD6 Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 2 0 MKYYIEY(0.794)MES(0.723)T(0.484)R 67.93 0.0031891 0 837.22 1237.9 717.37 837.29 933.35 1000.8 797.9 719.8 923.13 931.54 TRUE FALSE FALSE 739.0823407 1276.038232 756.1531921 871.4383053 864.49863 981.7114074 828.6752703 801.7391225 885.0781907 925.9991587 0.798145802 1.378012301 0.816580863 0.941078939 0.933584682 1.06016447 0.894898513 0.865809774 0.95580885 1 9.854867072 -9.983677925 0.016589966 0.933730934 0.942772757 0 0.159339352 893150.9589 2774.310588 834.0275028 683.292627 1.04E-10 9.983677925 0.009041823 YMIGVTYGGDDIPLS(ph)PYR ddPTM_HeLa_CUDC101_4h_R1 2 YMIGVTYGGDDIPLSPYR 18 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 1 0 YMIGVT(0.004)Y(0.001)GGDDIPLS(0.994)PY(0.002)R;YMIGVTYGGDDIPLS(1)PYR ; 111.58 0.00041872 7470200 1523.82 1670.86 1598.51 1537.47 2185.05 2055.79 1676.19 670.6 1816.71 1724.76 TRUE FALSE FALSE 1345.20013 1722.337216 1684.930286 1600.174672 2023.863215 2016.579231 1740.84121 746.9383933 1741.824445 1714.501051 0.784601519 1.004570522 0.982752554 0.933317989 1.180438597 1.17619014 1.015363163 0.435659338 1.015936645 1 10.74357307 -9.982273931 2.372476952 1.001203011 0.920214302 0.010926408 0.20175137 1.405892525 14.36932119 0.168250506 0.030610522 1.04E-10 9.982273931 -0.080988708 VDSLVSLS(ph)EEDLESDQR ddPTM_HeLa_CUDC101_4h_R1 4 VDSLVSLSEEDLESDQR 17 0 Q12802-4;Q12802;Q12802-2;A0A087WTD7;A8MYJ1;A0A087WY36;H0YMW2;H0YLH1 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 VDSLVS(0.002)LS(0.998)EEDLES(0.001)DQR;VDSLVS(0.004)LS(0.996)EEDLESDQR;VDSLVS(0.023)LS(0.977)EEDLESDQR;VDSLVS(0.005)LS(0.995)EEDLESDQR ;;; 320.78 6.57E-167 22636200 5089.76 4362.53 4383.61 4074.95 4706.32 4272.93 4256.57 3855.49 5318.36 4988.49 TRUE FALSE FALSE 4493.146048 4496.934378 4620.601216 4241.144074 4359.14415 4191.430979 4420.747331 4294.383397 5099.13495 4958.81824 0.906092103 0.906856061 0.931794834 0.855273146 0.879069153 0.845247956 0.891492109 0.866009438 1.028296401 1 12.27578063 -9.968860484 0.209337885 1.113925165 0.850900004 0.862218056 0.021325249 2.849618534 0.137909665 0.200768524 0.025356791 1.07E-10 9.968860484 -0.263025161 VTNDISPES(ph)SPGVGR ddPTM_HeLa_CUDC101_4h_R1 3 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154;Q15154-4;Q15154-2;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 VT(0.005)NDIS(0.036)PES(0.847)S(0.113)PGVGR;VT(0.211)NDIS(0.014)PES(0.597)S(0.179)PGVGR;VTNDIS(0.002)PES(0.998)SPGVGR ;; 213 1.02E-23 489658000 6488.3 6091.4 5854.1 5461.8 5788.7 5396.6 5718.5 5648.5 7135.6 6845.4 TRUE FALSE FALSE 5727.75131 6279.068814 6170.590354 5684.555812 5361.679134 5293.668846 5939.064461 6291.502408 6841.467548 6804.683256 0.841736653 0.922756957 0.906815221 0.835388746 0.78793956 0.777944931 0.872790729 0.924584168 1.005405732 1 12.73231229 -9.964239655 0.409657336 1.092377514 0.846843721 0.593808467 0.047901812 2.305046495 0.33632738 0.262208985 0.016156643 1.09E-10 9.964239655 -0.245533793 AHGCFPEGR ddPTM_HeLa_CUDC101_4h_R1 1 AHGCFPEGR 9 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 0 0 76.17 0.003141 0 246.66 262.39 195.51 205.69 208.99 174.38 256.72 213.23 333.35 218.44 FALSE FALSE TRUE 217.7468887 270.4739249 206.079862 214.0789273 193.5732241 171.053992 266.6217764 237.5032413 319.6091719 217.1407092 1.002791644 1.245615923 0.949061384 0.985899549 0.891464456 0.78775644 1.22787559 1.093775747 1.471898904 1 7.762486415 AHGELHEQFK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 AHGELHEQFKR 11 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 0 1 ; AHGELHEQFK(1)R;AHGELHEQFK(1)R 98.04 0.0038772 6456400 1822.87 1548.95 1719.73 1642.97 1810.3 1575.72 1592.68 1389.34 1536.61 1555.82 FALSE TRUE FALSE 1609.195942 1596.671314 1812.703806 1709.977418 1676.757776 1545.665766 1654.110201 1547.49685 1473.270285 1546.565913 1.040496191 1.032397843 1.172083123 1.105660873 1.084181257 0.99941797 1.069537474 1.000601938 0.952607498 1 10.59485261 -7.860643325 1.144585585 1.010266991 1.068709346 0.275565613 0.051598586 0.498856761 1.372676645 0.012350602 0.010934138 1.38E-08 7.860643325 0.058442355 QNS(ph)PVTQDGIQESPWQDR ddPTM_HeLa_CUDC101_4h_R1 1 QNSPVTQDGIQESPWQDR 18 0 O75815 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 0 QNS(1)PVTQDGIQESPWQDR 183.39 4.32E-11 7350700 760.37 657.63 709.1 952.05 913.33 794.63 624.78 670.71 763.93 796.06 TRUE FALSE FALSE 671.2405812 677.8908008 747.4360909 990.8787141 845.9554655 779.4737567 648.8779739 747.0609153 732.4404821 791.3249997 0.848248926 0.85665283 0.944537442 1.252176684 1.069036699 0.985023545 0.819989226 0.944063331 0.925587442 1 9.628126526 -9.963741284 2.300960879 1.000781421 0.941957614 0 0.122644765 1.284274012 12.34155284 0.108565187 0.020061597 1.09E-10 9.963741284 -0.058823807 LS(ph)PGTDSSSNLGGVK ddPTM_HeLa_CUDC101_4h_R1 2 LSPGTDSSSNLGGVK 15 0 A0A1W2PRB5;A0A0J9YVS1;A0A0G2JQF5;A0A3B3IT55;A0A0G2JNB1;A0A0G2JQF4;A0A0G2JNT7;Q7Z3B3;A0A1W2PRR3;I3L233;A0A1W2PPV8 A0A1W2PRB5 KANSL1 KAT8 regulatory NSL complex subunit 1 1 0 LS(1)PGTDSSSNLGGVK;LS(0.987)PGT(0.011)DSS(0.001)S(0.001)NLGGVK ; 210.02 1.59E-23 49453000 3480.4 3380.3 2890.5 2834.1 3172.9 3185.1 2856.3 2976.3 3282.4 3613 TRUE FALSE FALSE 3072.432788 3484.443036 3046.769173 2949.686848 2938.841488 3124.349524 2966.468448 3315.109961 3147.098083 3591.509715 0.855471106 0.970188949 0.848325472 0.821294409 0.818274687 0.869926513 0.825966984 0.923040789 0.876260495 1 11.8103747 -9.957161972 0.376032272 1.090985565 0.853149906 0.030760768 0.059295342 2.327753856 0.289948012 0.238636376 0.015622591 1.10E-10 9.957161972 -0.237835659 STLESEKPGS(ph)PEAAETSPPSNIIDHCEK ddPTM_HeLa_CUDC101_4h_R1 2 STLESEKPGSPEAAETSPPSNIIDHCEK 28 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 S(0.045)T(0.034)LES(0.047)EKPGS(0.579)PEAAET(0.223)S(0.071)PPS(0.001)NIIDHCEK;STLESEKPGS(1)PEAAETSPPSNIIDHCEK ; 130.14 8.23E-15 286340000 9239.1 6775 7089.8 7829.7 9124.7 8967.6 8686 7463.9 8843.7 3416.5 TRUE FALSE FALSE 8156.106704 6983.72972 7473.096033 8149.029009 8451.58906 8796.557971 9021.02193 8313.560206 8479.158943 3396.178506 2.401554185 2.056349425 2.200442651 2.399470168 2.48855855 2.590134163 2.656227261 2.447916148 2.496676464 1 11.72969657 -9.954833165 0.335103131 3.00E-16 2.551831589 0 0.490977387 0.88894305 0.090060503 0.888228648 0.063959587 1.11E-10 9.954833165 2.551831589 TSTS(ph)PPPEK ddPTM_HeLa_CUDC101_4h_R1 1 TSTSPPPEK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 T(0.004)ST(0.205)S(0.791)PPPEK 115.7 0.007397 602070000 10537 6152.4 9392.8 9388.7 8653.9 6965 7129.6 4555.2 10610 18248 TRUE FALSE FALSE 9301.868833 6341.948152 9900.60318 9771.611767 8015.519038 6832.154229 7404.59106 5073.745555 10172.65131 18139.46008 0.512797448 0.34962166 0.545804734 0.538693639 0.441883 0.376645953 0.408203498 0.279707639 0.560802321 1 14.14684389 -9.947935711 0.284927133 1.453600794 0.356226631 0.294169276 0.158427422 1.414814367 0.1095172 0.531592842 0.045724406 1.13E-10 9.947935711 -1.097374163 ASLPQAATFGELSGPLKPGS(ph)PYRPPVPR ddPTM_HeLa_CUDC101_4h_R1 1 ASLPQAATFGELSGPLKPGSPYRPPVPR 28 2 Q14687-3;Q14687;Q14687-2;H0Y613 Q14687-3 GSE1 Genetic suppressor element 1 1 0 ASLPQAAT(0.036)FGELS(0.105)GPLKPGS(0.749)PY(0.11)RPPVPR 51.242 0.018025 21442000 471.36 518.24 338.39 397.52 454.76 351.28 572.15 258.77 479.88 557.85 TRUE FALSE FALSE 416.1078953 534.2063601 356.684387 413.7325838 421.2132608 344.5799193 594.2180172 288.2273308 460.0991433 554.5318834 0.750376863 0.96334652 0.643217095 0.74609341 0.759583486 0.621388832 1.071566911 0.519766923 0.829707285 1 9.115126602 -9.932928678 0.390751642 1.149886568 0.749341115 0.097668041 0.159637963 3.889948392 0.528043547 0.691542281 0.045577791 1.17E-10 9.932928678 -0.400545453 KFSEK(ac)IALQK ddPTM_HeLa_CUDC101_4h_R1 1 KFSEKIALQK 10 2 Q5T4K5;Q53ET0;J3KNE6 Q5T4K5 CRTC2 CREB-regulated transcription coactivator 2 0 1 K(0.104)FSEK(0.896)IALQK 102.4 0.004453 0 1269 1341.7 1823.3 1893 2670.5 2569.5 1791.3 2415.3 798.26 657.37 FALSE TRUE FALSE 1120.249744 1383.036187 1921.873113 1970.204722 2473.502535 2520.491069 1860.391041 2690.247989 765.3553849 653.459934 1.714335777 2.116481998 2.941072609 3.01503523 3.785239778 3.857147068 2.846985629 4.11692875 1.171235366 1 9.351954972 -6.87263292 0.695045733 1.169429275 3.694795319 0.89605379 0.341562213 0.133116806 0.132128211 0.083075929 0.129836498 1.34E-07 6.87263292 2.525366043 up SPQTLAPVGEDAMKTPS(ph)PAAEDAREPEAK ddPTM_HeLa_CUDC101_4h_R1 2 SPQTLAPVGEDAMKTPSPAAEDAREPEAK 29 2 Q92797 Q92797 SYMPK Symplekin 1 0 S(0.001)PQT(0.001)LAPVGEDAMKT(0.029)PS(0.97)PAAEDAREPEAK;SPQTLAPVGEDAMKT(0.014)PS(0.985)PAAEDAREPEAK ; 72.082 2.50E-05 63187000 5786.1 4656.2 4161.3 4271.4 6005.9 5842.4 4909.1 3970.7 4488.2 3599.1 TRUE FALSE FALSE 5107.862129 4799.652003 4386.272465 4445.606155 5562.856722 5730.965954 5098.445631 4422.708438 4303.194496 3577.692393 1.4276974 1.341549657 1.226006035 1.242590381 1.554872837 1.601861011 1.425065397 1.236190246 1.20278493 1 11.80481364 -9.920951316 0.435368878 0.769970453 1.408003038 0.351566955 0.138391107 1.937771126 0.327158306 0.598939616 0.038153095 1.20E-10 9.920951316 0.638032585 VPVASPS(ph)AHNISSSGGAPDR ddPTM_HeLa_CUDC101_4h_R1 1 VPVASPSAHNISSSGGAPDR 20 0 E7ETY4;E9PC69;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-6;Q7KZI7-3;Q7KZI7-14;Q7KZI7-9;Q7KZI7-13;Q7KZI7-4;Q7KZI7-16;Q7KZI7-5;Q7KZI7-15;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 VPVAS(0.027)PS(0.909)AHNIS(0.046)S(0.014)S(0.004)GGAPDR 113.05 6.26E-05 0 653.91 650.93 490.72 610.67 750.84 802.67 570.85 704.05 638.27 364.93 TRUE FALSE FALSE 577.2596611 670.9843818 517.2498075 635.5757621 695.4520291 787.3604071 592.8678757 784.1962061 611.9602404 362.7593801 1.591301818 1.849667903 1.425875762 1.752058794 1.917116599 2.170475666 1.634328175 2.161753077 1.686959108 1 8.502869109 -9.913155981 0.152995228 1.37E-13 2.246916059 0.263391149 0.282661031 6.18036273 0.203908792 2.979489703 0.59913785 1.22E-10 9.913155981 2.246916059 AHQLVMEGYNWCHDR ddPTM_HeLa_CUDC101_4h_R1 2 AHQLVMEGYNWCHDR 15 0 H0YC23;P67775;P62714 H0YC23 PPP2CB;PPP2CA Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform 0 0 ; ; 136.83 0.00039275 50659000 3894.4 4217.9 3659.2 3622.3 3916.5 4418.5 3647.3 3970.8 4036.1 2919.2 FALSE FALSE TRUE 3437.904336 4347.8485 3857.02742 3770.033051 3627.587598 4334.224474 3787.977583 4422.819821 3869.73025 2901.836469 1.184734003 1.498309276 1.32916774 1.299188666 1.25010063 1.49361431 1.30537252 1.524145095 1.333545254 1 11.5027505 -7.878536086 0.712754541 1.021046835 1.386798336 0.160203035 0.139002477 0.238668027 0.269252577 0.033888194 0.026133606 1.32E-08 7.878536086 0.365751501 SSTFPQTDVLSS(ph)SLEAEHR ddPTM_HeLa_CUDC101_4h_R1 1 SSTFPQTDVLSSSLEAEHR 19 0 D4PHA4;Q86WP2-4;Q86WP2-3;Q86WP2;Q86WP2-2 D4PHA4 GPBP1 Vasculin 1 0 SSTFPQTDVLS(0.006)S(0.497)S(0.497)LEAEHR 187.57 1.00E-11 58957000 5312.6 5082.4 4002.2 4360 5543.5 4613.6 4507.9 3942.8 4883.6 5671 TRUE FALSE FALSE 4689.865081 5238.98272 4218.571038 4537.819646 5134.567049 4525.603267 4681.771213 4391.632415 4682.295941 5637.26864 0.831939257 0.929347713 0.748335995 0.804967784 0.910825326 0.80280071 0.830503478 0.779035504 0.83059656 1 12.4607806 -9.912475865 0.35286321 1.1142015 0.815799521 0 0.073925675 2.196750754 0.249672648 0.266945568 0.019350855 1.22E-10 9.912475865 -0.298401979 SNVSSPATPTASSSSSTT(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 4 SNVSSPATPTASSSSSTTPTR 21 0 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVSSPATPT(0.001)AS(0.001)S(0.005)S(0.059)S(0.059)S(0.059)T(0.059)T(0.755)PT(0.002)R;SNVSSPATPT(0.005)AS(0.001)S(0.001)S(0.007)S(0.007)S(0.002)T(0.002)T(0.974)PT(0.001)R;SNVSSPATPT(0.001)AS(0.017)S(0.059)S(0.105)S(0.054)S(0.008)T(0.096)T(0.645)PT(0.015)R;SNVSSPATPTASSSS(0.001)S(0.027)T(0.027)T(0.944)PTR ;;; 301.34 4.11E-125 96205000 11510.48 10226.71 9700.68 9321.28 10960.85 9521.86 8497.06 9845.38 10836.53 11774.79 TRUE FALSE FALSE 10161.23898 10541.78281 10225.1281 9701.442088 10152.28993 9340.246385 8824.794451 10966.13826 10389.84365 11704.75303 0.868129294 0.9006412 0.873587685 0.828846373 0.867364729 0.797987481 0.75394965 0.936896169 0.88766022 1 13.51480687 -9.906246941 0.251807077 1.125962097 0.819051673 0.200136356 0.058628508 3.678713534 0.239488668 0.349618633 0.036461549 1.24E-10 9.906246941 -0.306910424 SQLPTLEQDGGTQNPVS(ph)SPGMSQELR ddPTM_HeLa_CUDC101_4h_R1 1 SQLPTLEQDGGTQNPVSSPGMSQELR 26 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8;H0YCI3;P46937-4 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 SQLPTLEQDGGTQNPVS(0.5)S(0.5)PGMSQELR 185.47 1.88E-17 18606000 1697.2 1538.1 1415 1280.7 1790.8 1682 1480.6 995.89 1791.4 1962.9 TRUE FALSE FALSE 1498.256789 1585.487038 1491.49918 1332.932482 1658.696252 1649.918652 1537.707238 1109.258092 1717.557734 1951.224584 0.767854609 0.812559995 0.764391343 0.683126121 0.85007962 0.845581112 0.788072911 0.568493295 0.880246051 1 10.93016412 -9.904167646 0.367803498 1.153467746 0.747986353 0.382923219 0.086311205 2.337498115 0.287945351 0.399047615 0.028347337 1.25E-10 9.904167646 -0.405481393 AASDS(ph)NPAGPLR ddPTM_HeLa_CUDC101_4h_R1 2 AASDSNPAGPLR 12 0 Q9BUU2-2;Q9BUU2 Q9BUU2-2 METTL22 Methyltransferase-like protein 22 1 0 AAS(0.221)DS(0.779)NPAGPLR;AAS(0.253)DS(0.747)NPAGPLR ; 139.74 0.0010559 17289000 3110.7 2908.94 2186.6 2734.9 2975.5 2907.4 2624.2 2611.6 2680.6 2329 TRUE FALSE FALSE 2746.068462 2998.560993 2304.81421 2846.441043 2756.003293 2851.946189 2725.416273 2908.893988 2570.104533 2315.147004 1.186131359 1.295192481 0.995536873 1.229486092 1.19042259 1.231863974 1.177210893 1.256461893 1.110125849 1 11.17688809 -9.900899418 0.362196708 0.871890597 1.207903493 0.26544443 0.083135101 2.691745249 0.322912557 0.375918613 0.027102808 1.26E-10 9.900899418 0.336012896 KPEKPLFSSAS(ph)PQDSSPR ddPTM_HeLa_CUDC101_4h_R1 1 KPEKPLFSSASPQDSSPR 18 2 Q5VW31;O00712;O00712-4;A0A1B0GW37;U3KQE8;A0A0A0MRX8;A0A1B0GU97;A0A2R8Y7V8;Q5VW30;Q5VW27;A0A1B0GWI9;A0A1B0GWJ4;A0A1B0GWB8;A0A1B0GVN4;Q5VW26;O00712-5;O00712-6 Q5VW31 NFIB Nuclear factor 1 B-type;Nuclear factor 1 1 0 KPEKPLFSS(0.01)AS(0.64)PQDS(0.089)S(0.26)PR 83.251 0.0032144 119670000 2925.4 2889.7 2745.7 2397.1 2673.8 2510.1 2485.2 2701.3 3050.8 3270.9 TRUE FALSE FALSE 2582.489047 2978.728232 2894.140847 2494.864099 2476.559101 2462.224025 2581.054996 3008.805073 2925.044733 3251.444541 0.794258987 0.91612457 0.890109245 0.767309443 0.761679638 0.757270805 0.793817937 0.925374871 0.899613909 1 11.6668651 -9.900726159 0.464248855 1.098643564 0.812976944 0.29408458 0.068319938 1.815978634 0.353871631 0.264048781 0.017013969 1.26E-10 9.900726159 -0.28566662 GTEPSPGGTPQPS(ph)RPVS(ph)PAGPPEGVPEEAQPPR ddPTM_HeLa_CUDC101_4h_R1 1 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 2 0 GT(0.004)EPS(0.077)PGGT(0.247)PQPS(0.705)RPVS(0.968)PAGPPEGVPEEAQPPR 72.514 5.88E-06 31335000 1691.8 1356.3 1659.9 1434.7 1305.2 1545.6 1426.6 1302.9 1689.4 1822.8 TRUE FALSE FALSE 1493.489769 1398.085995 1749.639215 1493.213267 1208.917996 1516.120255 1481.62444 1451.216869 1619.762217 1811.957905 0.824240875 0.771588563 0.965606988 0.824088277 0.667188787 0.836730396 0.817692528 0.800910918 0.893929276 1 10.82333372 -9.888856869 0.33143082 1.12911644 0.794671408 0.290834339 0.075962158 3.014277526 0.310308507 0.389312681 0.030571506 1.29E-10 9.888856869 -0.334445032 S(ph)PSSQTPNSR ddPTM_HeLa_CUDC101_4h_R1 2 SPSSQTPNSR 10 0 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 S(1)PSSQTPNSR;S(0.999)PSSQTPNSR ; 128.36 0.0027886 18507700 1108.46 362.44 1143.25 1023.32 817.38 654.37 817.18 159.24 958.96 1416.04 TRUE FALSE FALSE 978.5279991 373.6063468 1205.057553 1065.055413 757.0835059 641.8889825 848.6989063 177.3672379 919.4312629 1407.617331 0.695166206 0.265417552 0.856097411 0.756637041 0.537847531 0.456010997 0.602932976 0.126005296 0.653182682 1 10.45903947 -9.882006531 0.092632863 1.858626552 3.08E-16 0.247213943 0.21655552 29.52288205 0.554907824 8.892572009 3.188228588 1.31E-10 9.882006531 -1.858626552 LSSWDQAET(ph)PGHT(ph)PSLR ddPTM_HeLa_CUDC101_4h_R1 1 LSSWDQAETPGHTPSLR 17 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 LS(0.044)S(0.087)WDQAET(0.87)PGHT(0.986)PS(0.014)LR 113.42 0.00049465 6556700 3369.7 1851.8 2041.7 2139 2200.7 2503.9 2706.2 2264.1 1861.1 2122.6 TRUE FALSE FALSE 2974.708874 1908.851763 2152.080478 2226.237666 2038.358745 2456.142279 2810.579041 2521.835992 1784.38467 2109.974681 1.40983155 0.904679938 1.019955593 1.055101602 0.966058391 1.164062442 1.332043965 1.195197277 0.845690086 1 11.04300997 -9.876874277 2.013851785 0.998726931 1.179976261 0.118441533 0.162906291 0.615175648 4.5201914 0.142050518 0.028076646 1.33E-10 9.876874277 0.18124933 TVEDEDQDS(ph)EEEKDNDSYIK ddPTM_HeLa_CUDC101_4h_R1 3 TVEDEDQDSEEEKDNDSYIK 20 1 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 TVEDEDQDS(1)EEEKDNDSYIK;TVEDEDQDS(0.977)EEEKDNDS(0.011)Y(0.011)IK;TVEDEDQDS(0.865)EEEKDNDS(0.067)Y(0.067)IK ;; 74 0.0038346 318031000 9053.6 7604.6 8073.3 7752.9 8054.6 7644.1 7564 7005.2 8902 9782.2 TRUE FALSE FALSE 7992.350732 7838.888712 8509.767018 8069.096773 7460.428205 7498.301528 7855.746014 7802.643652 8535.055792 9724.015039 0.821918796 0.806137041 0.875128945 0.829811219 0.767216852 0.771111675 0.807870615 0.802409665 0.877729596 1 13.24733641 -9.874161964 0.329013426 1.130769342 0.790318648 0.471449339 0.047204465 1.224562738 0.125435664 0.159889234 0.012852668 1.34E-10 9.874161964 -0.340450694 S(ph)SGGGYGGGPAGGHGGNR ddPTM_HeLa_CUDC101_4h_R1 1 SSGGGYGGGPAGGHGGNR 18 0 Q9H2U1-3;Q9H2U1-2;Q9H2U1 Q9H2U1-3 DHX36 ATP-dependent RNA helicase DHX36 1 0 S(0.5)S(0.5)GGGYGGGPAGGHGGNR 149.72 4.21E-05 2980400 257.16 132.26 271.68 199.45 371.09 202.83 97.933 258.72 314.3 205.96 TRUE FALSE FALSE 227.0160946 136.3347738 286.3678426 207.5844331 343.71543 198.9613557 101.7103086 288.171639 301.344421 204.7349408 1.108829269 0.665908678 1.398724817 1.013917958 1.678831316 0.971799708 0.496790183 1.407535216 1.471875879 1 7.677613528 -9.862119266 0.420068182 0.954391309 1.092780202 0 0.362376724 21.71663173 3.537582042 1.40344932 0.098139786 1.37E-10 9.862119266 0.138388894 HVTLPS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 HVTLPSSPR 9 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 HVTLPS(0.5)S(0.5)PR 88.155 0.020058 86427000 4613.4 2013.1 2041.1 2199.8 4388.9 3820.3 3177.1 2584.3 2947.3 2605.5 TRUE FALSE FALSE 4072.624245 2075.121225 2151.44804 2289.517352 4065.139591 3747.434143 3299.641811 2878.486266 2825.811047 2590.00237 1.572440355 0.801204373 0.830674159 0.883982725 1.569550529 1.446884445 1.273991811 1.111383642 1.091045738 1 11.3387377 -9.861190839 1.97044438 0.998477513 1.257182478 0 0.281098165 0.7515359 5.286631083 0.242795997 0.048573742 1.38E-10 9.861190839 0.258704965 LPDLS(ph)PVENK ddPTM_HeLa_CUDC101_4h_R1 3 LPDLSPVENK 10 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3;A0A2R8Y7F4;A0A2R8YET2;H7C5N8 E7EPN9 PRRC2C Protein PRRC2C 1 0 LPDLS(1)PVENK;LPDLS(1)PVENK;LPDLS(1)PVENK ;; 166.24 1.68E-05 236548700 12116.2 10441.6 10858.9 9844.7 9179.6 10730.5 10130.9 8742.1 11579.7 13324.4 TRUE FALSE FALSE 10695.9574 10763.29332 11445.96498 10246.20942 8502.439196 10525.83359 10521.65221 9737.265327 11102.37986 13245.14588 0.807537909 0.812621727 0.864162999 0.773582225 0.641928694 0.79469367 0.794377979 0.735157273 0.838222543 1 13.69317611 -9.856862989 0.261035303 1.176960523 0.736417501 0.323550133 0.071395908 2.667248211 0.187965442 0.374187116 0.039151768 1.39E-10 9.856862989 -0.440543022 AHTMTDDVTFWK ddPTM_HeLa_CUDC101_4h_R1 1 AHTMTDDVTFWK 12 0 A0A087WVQ6;Q00610-2;Q00610;J3KSQ2 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 140.39 0.0011434 13748000 3242 2704.5 3250.2 3167.9 3915.2 3540.8 3354.7 3174.7 3677.4 3536.2 FALSE FALSE TRUE 2861.977675 2787.822439 3425.915643 3297.100655 3626.383496 3473.265139 3484.091903 3536.095015 3525.816016 3515.166525 0.814179827 0.793084032 0.974609771 0.937964285 1.031639176 0.988079829 0.991159843 1.005953769 1.003029583 1 11.77937732 -6.219609092 2.129871589 0.901831177 0.999426231 0.261900553 0.067601216 0.371338717 3.28932825 0.013087604 0.023064687 6.03E-07 6.219609092 0.097595054 HSTPSNSSNPSGPPS(ph)PNSPHR ddPTM_HeLa_CUDC101_4h_R1 3 HSTPSNSSNPSGPPSPNSPHR 21 0 Q9Y5S2 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 1 0 HSTPSNSSNPSGPPS(0.961)PNS(0.039)PHR;HSTPSNSSNPSGPPS(0.898)PNS(0.102)PHR;HSTPSNSSNPS(0.102)GPPS(0.821)PNS(0.076)PHR ;; 154.17 2.81E-07 2334800 495.73 237.03 0 0 482.47 289.23 401.11 168.31 287.63 160.05 TRUE FALSE FALSE 437.6212809 244.3326134 0 0 446.8791493 283.7134196 416.5809471 187.4697301 275.7737697 159.0980155 2.750639469 1.535736399 0 0 2.808829186 1.783261839 2.61839185 1.178328526 1.733357697 1 7.31377203 -9.849338649 1.937650099 0.995817047 1.800104905 0 1.000937981 0.824065149 5.604220661 0.815358928 0.16448708 1.41E-10 9.849338649 0.804287858 GSSS(ph)DSTAGVKE ddPTM_HeLa_CUDC101_4h_R1 1 GSSSDSTAGVKE 12 1 Q86TU7 Q86TU7 SETD3 Histone-lysine N-methyltransferase setd3 1 0 GS(0.001)S(0.008)S(0.99)DSTAGVKE 94.688 0.03281 6140000 2817.7 2459.6 2628.9 2109.9 2555 2229.4 2567.9 2004.1 2834 3278.9 TRUE FALSE FALSE 2487.413477 2535.377361 2771.026286 2195.950842 2366.52274 2186.877909 2666.944763 2232.238643 2717.18132 3259.396957 0.763151439 0.777867009 0.850165329 0.673729181 0.72606153 0.670945558 0.818232574 0.684862468 0.833645412 1 11.67038935 -9.846818824 0.321149888 1.173137778 0.717925294 0.394413607 0.07508581 1.692280973 0.168608326 0.289249434 0.024510931 1.42E-10 9.846818824 -0.455212484 AHVDEFK ddPTM_HeLa_CUDC101_4h_R1 1 AHVDEFK 7 0 A0A087WYS1;E7EUC7;Q16851-2;Q16851 A0A087WYS1 UGP2 UTP--glucose-1-phosphate uridylyltransferase 0 0 91.906 0.0014376 0 989.16 621.73 1343.9 975.7 939.74 762.71 888.06 399.86 1324.2 1475.3 FALSE FALSE TRUE 873.2121643 640.8847644 1416.555299 1015.493263 870.4172524 748.1625775 922.3127717 445.3784461 1269.615916 1466.52485 0.595429504 0.437009141 0.965926557 0.692448726 0.593523698 0.510160177 0.628910428 0.303696488 0.865730925 1 10.5181858 -13.52287875 0.178243363 2.715698938 0.49472481 0.433057742 0.161709948 35.36521318 0.403601583 21.0938022 0.225304159 3.00E-14 13.52287875 -2.220974128 AHVIVMAATNRPNSIDPALRR ddPTM_HeLa_CUDC101_4h_R1 1 AHVIVMAATNRPNSIDPALRR 21 2 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 49.535 0.018355 2633100 569.77 678.42 608.79 580.88 886.69 668.57 735.85 646.07 781.32 645.36 FALSE FALSE TRUE 502.9824243 699.3213161 641.7030289 604.5707972 821.2806452 655.8181412 764.231981 719.6159973 749.1136589 641.52137 0.78404625 1.09009824 1.000283169 0.942401649 1.280207774 1.022285729 1.191280629 1.121733478 1.167714271 1 9.325353514 -6.303542867 1.081887525 0.905796453 1.143721799 0.024454652 0.132739152 0.346314798 0.802614495 0.020647573 0.041400129 4.97E-07 6.303542867 0.237925346 AIACLLFGGSR ddPTM_HeLa_CUDC101_4h_R1 2 AIACLLFGGSR 11 0 B1AHB1;P33992 B1AHB1 MCM5 DNA helicase;DNA replication licensing factor MCM5 0 0 ; ; 159.28 0.0016828 727230 173 0 0 0 69.936 151.7 68.559 0 0 0 FALSE FALSE TRUE 152.7212023 0 0 0 64.77696061 148.8065752 71.2033436 0 0 0 0 AIADTGANVVVTGGK ddPTM_HeLa_CUDC101_4h_R1 1 AIADTGANVVVTGGK 15 0 P50990-3;P50990-2;P50990;H7C4C8 P50990-3 CCT8 T-complex protein 1 subunit theta 0 0 182.89 3.06E-10 450740 179.91 85.739 239.3 224.57 142.87 265.48 145.75 189.85 172.07 0 FALSE FALSE TRUE 158.8212225 88.38051696 252.2372818 233.7289353 132.3307647 260.4164113 151.3716263 211.4617566 164.9772018 0 0 AICSSIDK(ac)LDK ddPTM_HeLa_CUDC101_4h_R1 1 AICSSIDKLDK 11 1 A0A2R8Y5P7;P49590-2;P49590;D6RJE6;A0A2R8Y6I1 A0A2R8Y5P7 HARS2 "Probable histidine--tRNA ligase, mitochondrial" 0 1 AICSSIDK(1)LDK 143.96 9.59E-08 0 323.99 144.15 200.42 197.29 390.79 358.1 209.92 361.68 338.59 160.2 FALSE TRUE FALSE 286.0123833 148.5910906 211.2553114 205.336339 361.9622003 351.2698391 218.0166847 402.8521892 324.6331769 159.2471233 1.796028572 0.933084929 1.326587929 1.289419455 2.272959114 2.205815916 1.369046299 2.529729774 2.038549709 1 7.315123501 -1 0.105588974 0.805780126 4.743383514 0.152854783 0.494491456 100.195038 0.747178281 3.009374072 57.56851912 0.1 1 3.937603388 AIDDNMSLDEIEK ddPTM_HeLa_CUDC101_4h_R1 1 AIDDNMSLDEIEK 13 0 P31327-2;P31327;P31327-3;A0A669KBF2 P31327-2 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" 0 0 249.2 4.27E-55 26201000 1159 1249.8 898.71 1147.5 1430.6 1146.8 946.85 828.41 958.56 1223.6 FALSE FALSE TRUE 1023.143777 1288.304857 947.296981 1194.30001 1325.067488 1124.926701 983.3703217 922.7128459 919.0477511 1216.321973 0.841178405 1.059180781 0.778820906 0.981894627 1.089405205 0.92485931 0.80847863 0.758609041 0.755595781 1 10.24830946 -7.427630632 0.013322573 1.838840112 1.84E-06 0 0.123706618 1224.565103 14.23932444 983.4649837 980.039587 3.74E-08 7.427630632 -1.838838271 IS(ph)VVDY(ph)S(ph)YLEGDLPIS(ph)AR ddPTM_HeLa_CUDC101_4h_R1 1 ISVVDYSYLEGDLPISAR 18 0 Q5SWA1 Q5SWA1 PPP1R15B Protein phosphatase 1 regulatory subunit 15B 4 0 IS(0.997)VVDY(0.899)S(0.916)Y(0.189)LEGDLPIS(1)AR 65.374 0.002434 0 640.46 751.72 474.03 458.95 487.63 762.76 587.95 493.13 662.54 698.84 TRUE FALSE FALSE 565.3862497 774.8796022 499.6574957 477.6679648 451.6585064 748.2116238 610.6274284 549.2659259 635.2298208 694.6832686 0.813876302 1.115443019 0.719259436 0.687605397 0.650164653 1.077054332 0.879001202 0.790671016 0.914416468 1 9.44021154 -9.842027804 0.466981287 1.080500126 0.833243819 0.081727712 0.147072005 4.516134386 0.924551006 0.566099171 0.039664204 1.44E-10 9.842027804 -0.247256307 AIEDGNLEEMEEEVR ddPTM_HeLa_CUDC101_4h_R1 1 AIEDGNLEEMEEEVR 15 0 P51531;P51531-2;F6VDE0;A0A0U1RQZ9;A0A0U1RRG6;A0A0U1RR26;B1ALF6;B4DNT1;A0A1W2PS06;A0A0U1RRJ4;A0A0U1RR83;A0A0U1RRN2;A0A0U1RQW7;F6XE55;A0A0U1RQU0;A0A0U1RQX3 P51531 SMARCA2 Probable global transcription activator SNF2L2 0 0 151.3 1.23E-06 0 537.14 473.99 539.21 722.58 733.8 711 578.7 608.26 657.77 855.25 FALSE FALSE TRUE 474.1772635 488.5930701 568.3613236 752.0499357 679.6690359 697.4388596 601.0206529 677.5018597 630.6564422 850.162935 0.55774869 0.574705212 0.668532231 0.884595064 0.799457384 0.820359052 0.706947607 0.796908254 0.74180656 1 9.731595552 -9.540791098 1.334409306 0.99842178 0.708292302 0.028728214 0.127052672 0.317344661 1.020828613 0.081719133 0.019890121 2.88E-10 9.540791098 -0.290129478 AIEEGTLEEIEEEVR ddPTM_HeLa_CUDC101_4h_R1 2 AIEEGTLEEIEEEVR 15 0 P51532-5;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;P51532;A0A2R8Y4C5;P51532-4;P51532-2;P51532-3;A0A2R8Y6V2;A0A2R8Y6N0;A0A2R8YG32;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y526;A0A2R8YDA1;A0A2R8Y7Y7;A0A2R8YF58;K7EQF0;A0A2R8Y5K3;A0A2R8Y523;A0A2R8YFK5;K7EP28 P51532-5 SMARCA4 Transcription activator BRG1 0 0 ; ; 247.88 5.45E-55 8515700 1523.57 1631.23 1495.47 1338.34 1635.28 1155.91 1313.13 1227.33 1492 1478.79 FALSE FALSE TRUE 1344.979434 1681.486263 1576.319632 1392.92329 1514.648652 1133.862943 1363.777864 1367.044286 1430.499128 1469.994091 0.914955674 1.143872804 1.07233059 0.947570673 1.030377374 0.771338436 0.927743773 0.929965837 0.97313257 1 10.52159464 -5.286967252 24.96986138 0.984912125 0.881488746 0.364261651 0.076324915 772.1643576 755284.5296 0.011868228 0.026547594 5.16E-06 5.286967252 -0.10342338 ES(ph)SPSHGLLK ddPTM_HeLa_CUDC101_4h_R1 1 ESSPSHGLLK 10 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 0 ES(0.476)S(0.476)PS(0.048)HGLLK 98.156 0.011707 19049000 8848.5 5511.6 4915.9 5380.6 8368.1 7057.6 6623.4 5307.2 5964.4 5794.7 TRUE FALSE FALSE 7811.292243 5681.405863 5181.668424 5600.044125 7750.801935 6922.988039 6878.866757 5911.350196 5718.544908 5760.232867 1.356072302 0.98631531 0.899558845 0.972190579 1.345570937 1.201859057 1.194199421 1.026234587 0.9927628 1 12.49191142 -9.836981982 1.904135128 0.999236933 1.165630753 0.043943109 0.151931182 0.649774306 4.26608822 0.130969311 0.0266429 1.46E-10 9.836981982 0.16639382 AIENLIGK(ac)PTEK ddPTM_HeLa_CUDC101_4h_R1 2 AIENLIGKPTEK 12 1 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 0 1 ; AIENLIGK(1)PTEK;AIENLIGK(1)PTEK 128.67 0.00079206 702110 626.2 564.09 539.33 666.8 705.67 1009.38 887.78 649.56 921.1 852.37 FALSE TRUE FALSE 552.7977853 581.4689443 568.4878112 693.9949862 653.61413 990.1277582 922.021972 723.5032848 883.1318681 847.3000653 0.652422687 0.686260946 0.67094036 0.819066367 0.771408096 1.168568018 1.088188246 0.853892634 1.04228939 1 9.72672917 -5.276314548 24.52579267 0.803132751 1.042013496 0.353254516 0.143037741 548.0294336 903576.5726 0.023152274 0.051981883 5.29E-06 5.276314548 0.238880745 AIENLIGKPTEK(ac)SQTPK ddPTM_HeLa_CUDC101_4h_R1 2 AIENLIGKPTEKSQTPK 17 2 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 0 1 ; AIENLIGKPTEK(1)SQTPK;AIENLIGKPTEK(1)SQTPK 163.34 0.00012804 2608100 1237.9 708.76 1053.79 1088.5 991.31 964.27 968.53 1018.07 804.56 898.57 FALSE TRUE FALSE 1092.795239 730.5960555 1110.761075 1132.893735 918.1830363 945.8781563 1005.886527 1133.962974 771.3956963 893.2252657 1.223426252 0.817930351 1.243539696 1.268318059 1.027941183 1.058946934 1.12612861 1.269515112 0.863607117 1 9.802880249 -9.622464512 1.411858567 0.999461066 1.136418903 0.208176833 0.139253256 0.725847854 2.581679394 0.094286728 0.02119796 2.39E-10 9.622464512 0.136957837 AIEPPPLDAVIEAEHTLR ddPTM_HeLa_CUDC101_4h_R1 2 AIEPPPLDAVIEAEHTLR 18 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 ; ; 221.85 5.02E-33 11332700 7434.2 6010.3 5718.1 5422.7 6531.1 6700.5 5908.4 5325.5 5865.6 5858.3 FALSE FALSE TRUE 6562.774346 6195.470219 6027.237782 5643.861145 6049.313765 6572.699126 6136.288967 5931.733394 5623.817485 5823.454571 1.126955532 1.063882296 1.034993526 0.969160328 1.0387844 1.128659809 1.053719728 1.018593572 0.965718444 1 12.50765952 -6.770701111 23.72177567 1.061921164 1.041911744 0 0.055570957 403.8566445 1034382.252 0.00980749 0.01300697 1.70E-07 6.770701111 -0.020009421 RQDS(ph)MEALQMDR ddPTM_HeLa_CUDC101_4h_R1 2 RQDSMEALQMDR 12 1 Q8TDR0-2;Q8TDR0 Q8TDR0-2 TRAF3IP1 TRAF3-interacting protein 1 1 0 RQDS(1)MEALQMDR;RQDS(1)MEALQMDR ; 204.17 1.33E-16 34011000 4507.9 4885.4 4447.1 4843.1 4966.8 4170.5 4481.7 4029.6 4679.5 4938 TRUE FALSE FALSE 3979.490796 5035.913383 4687.523678 5040.622552 4600.409059 4090.954661 4654.56067 4488.313376 4486.609029 4908.628556 0.810713369 1.025930833 0.954955875 1.026890198 0.937208633 0.83342111 0.948240556 0.914372176 0.914024962 1 12.26110428 -9.831075272 1.889305066 1.000372438 0.911231983 0 0.073090663 0.553247995 3.576079308 0.059313055 0.012119539 1.48E-10 9.831075272 -0.089140455 AIESLVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 AIESLVKK 8 1 K7ENG1;K7EL15;K7EL18;K7EIJ2;K7ES96;K7EIU8;Q13485 K7ENG1 SMAD4 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 4 0 1 AIESLVK(1)K 111.95 0.0043991 1334600 632.82 634.35 514.31 470.14 705.7 686.65 565.34 557.68 392.45 379.49 FALSE TRUE FALSE 558.6417989 653.8935716 542.1151543 489.3143413 653.641917 673.5532953 587.1453532 621.164037 376.2730449 377.2327766 1.480894115 1.733395432 1.437083912 1.297115128 1.732728325 1.785511061 1.556453706 1.646633261 0.997455863 1 8.559311223 -9.473940265 0.310463669 0.683348904 1.661370339 0.744529509 0.138587272 1.706535128 0.195687356 0.603541843 0.079025914 3.36E-10 9.473940265 0.978021435 RWS(ph)GNEPTDEFSDLPLR ddPTM_HeLa_CUDC101_4h_R1 2 RWSGNEPTDEFSDLPLR 17 1 Q96II8-3;Q96II8;Q96II8-2;E9PD99;Q96II8-4 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 0 RWS(1)GNEPTDEFSDLPLR;RWS(1)GNEPTDEFSDLPLR ; 153.17 4.89E-05 11274000 2120.19 1428.47 1299.58 1358.92 1480.77 1545.94 1563.46 1558.94 1505.88 1362.97 TRUE FALSE FALSE 1871.664542 1472.479468 1369.839226 1414.342631 1371.536547 1516.45377 1623.763176 1736.403428 1443.806989 1354.862994 1.381441925 1.086810603 1.011053687 1.04390085 1.01230645 1.119267245 1.198470387 1.28160813 1.065647963 1 10.40393126 -9.829828163 1.889128285 0.999326568 1.179116514 0.044851991 0.119032662 0.515470182 3.333269154 0.111342928 0.022810828 1.48E-10 9.829828163 0.179789946 QTQSESSNYDS(ph)ELEK ddPTM_HeLa_CUDC101_4h_R1 2 QTQSESSNYDSELEK 15 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 QTQSES(0.001)S(0.001)NYDS(0.998)ELEK;QTQSESSNYDS(1)ELEK ; 241.79 5.49E-44 17833800 3678 3008.9 3043.33 3028.97 2836.9 3479.75 2474.47 2686 3151.81 3953.4 TRUE FALSE FALSE 3246.870415 3101.600643 3207.861625 3152.504489 2627.627539 3413.379566 2569.911137 2991.763383 3021.891058 3929.885001 0.826199854 0.789234454 0.816273663 0.802187466 0.668627082 0.868569835 0.653940544 0.761285224 0.768951523 1 11.94027138 -9.829193298 0.200406979 1.221629632 0.697127084 0 0.093171106 3.923452029 0.190384553 0.53638359 0.080503918 1.48E-10 9.829193298 -0.524502547 S(ph)LSLESTDR ddPTM_HeLa_CUDC101_4h_R1 1 SLSLESTDR 9 0 H0Y7V8;A0A0A0MRJ1;H0Y5V1;A0A0A0MRJ0;Q5VT25-3;Q5VT25-4;Q5VT25-5;Q5VT25;Q5VT25-2;Q5VT25-6 H0Y7V8 CDC42BPA Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase MRCK alpha 1 0 S(0.999)LS(0.001)LESTDR 91.549 0.026489 9148800 2863.5 2238.8 2584.6 2320.9 2673.9 2453.1 2394 2091.6 2626.5 2877 TRUE FALSE FALSE 2527.844871 2307.774774 2724.331294 2415.556334 2476.651724 2406.311205 2486.337382 2329.699289 2518.234558 2859.887476 0.883896619 0.806946005 0.952600869 0.844633348 0.865996213 0.841400658 0.86938294 0.814612221 0.880536238 1 11.48174267 -9.828617393 0.282678571 1.104159852 0.840690914 0.110674289 0.053503231 2.530339734 0.205299207 0.225943597 0.022195855 1.48E-10 9.828617393 -0.263468938 AIK(ac)LRPIAVIK ddPTM_HeLa_CUDC101_4h_R1 1 AIKLRPIAVIK 11 2 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 1 AIK(1)LRPIAVIK 113.44 0.0025531 0 1610.3 1232 1190.5 1135.9 1116.4 1097.9 970.62 939.29 1126.1 1075.7 FALSE TRUE FALSE 1421.543075 1269.95646 1254.862031 1182.226912 1034.045396 1076.959387 1008.057139 1046.214977 1079.681681 1069.301689 1.329412541 1.187650289 1.173534134 1.105606514 0.967028676 1.007161401 0.942724723 0.978409543 1.009707263 1 10.06245323 -5.883248874 3.090433792 1.163311565 0.972491182 0.424253929 0.09003557 0.224478011 4.293518497 0.018596312 0.035858457 1.31E-06 5.883248874 -0.190820383 AILILDNDGDR ddPTM_HeLa_CUDC101_4h_R1 2 AILILDNDGDR 11 0 F8VXB1;F8VUC5;F8W156;F8W651;F8VXR1;F8VYZ4;F8VVA7;P61923-5;P61923;P61923-4 F8VXB1 COPZ1 Coatomer subunit zeta-1 0 0 ; ; 202.2 7.21E-16 38400000 5466.9 4263.5 4193 4225.4 4553.1 4142.1 4134.6 3566.9 5087.3 4915.4 FALSE FALSE TRUE 4826.078269 4394.853382 4419.686263 4397.730076 4217.226884 4063.096344 4294.072907 3972.941478 4877.599341 4886.162982 0.987703089 0.89944879 0.904531077 0.900037533 0.863095828 0.831551538 0.878823102 0.813100482 0.998247369 1 12.25448627 -6.768834676 0.690200128 1.000881836 0.842351195 0.883276365 0.021829834 0.136527689 0.132931471 0.005096233 0.008608527 1.70E-07 6.768834676 -0.158530641 LGIHEDS(ph)TNR ddPTM_HeLa_CUDC101_4h_R1 2 LGIHEDSTNR 10 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 0 LGIHEDS(0.939)T(0.061)NR;LGIHEDS(0.789)T(0.211)NR ; 116.71 0.0037564 26250000 11478.6 9978.9 10662.9 9674.2 10422.5 10114.7 9726.4 9490.9 11296.1 11805.4 TRUE FALSE FALSE 10133.09591 10286.33808 11239.36863 10068.75569 9653.65294 9921.77895 10101.55051 10571.30569 10830.46998 11735.18096 0.863480158 0.876538514 0.957749921 0.85799748 0.822624975 0.845473026 0.860792053 0.900821703 0.92290609 1 13.51855247 -9.828331687 0.427142242 1.069820502 0.864914253 0.348780963 0.042061284 1.530778031 0.263130477 0.147841276 0.010759814 1.48E-10 9.828331687 -0.204906249 AILVDLEPGTMDSVR ddPTM_HeLa_CUDC101_4h_R1 4 AILVDLEPGTMDSVR 15 0 Q5JP53;P07437;G3V5W4;G3V2R8;G3V3R4;G3V2N6;Q9BVA1;Q13885;A0A0B4J269;Q13509 Q5JP53;Q9BVA1;A0A0B4J269 TUBB;TUBB3;TUBB2B;TUBB2A Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain 0 0 ;;; ;;; 142.19 0.0021657 22501850 7010.84 6257.03 4975.47 5719.492 6411.02 6189.92 5657.27 5348.24 6426.28 6097.305 FALSE FALSE TRUE 6189.039963 6449.801678 5244.458958 5952.757606 5938.091827 6071.857589 5875.472799 5957.062023 6161.386018 6061.037959 1.021118826 1.064141443 0.865274066 0.982135015 0.979715334 1.001785112 0.96938393 0.982845193 1.01655625 1 12.56534916 AILVVFANK ddPTM_HeLa_CUDC101_4h_R1 1 AILVVFANK 9 0 B4DZG7;F8VYN9;P40616-2;P40616 B4DZG7 ARL1 ADP-ribosylation factor-like protein 1 0 0 146.94 1.01E-10 0 426.64 159.47 163.89 188.5 180.36 128.44 65.351 135.86 205.46 68.475 FALSE FALSE TRUE 376.6299059 164.3830817 172.7503891 196.1878448 167.0552021 125.990221 67.87160996 151.3257532 196.9908518 68.06770765 5.53316571 2.414993649 2.53791989 2.88224551 2.45425045 1.850954371 0.997119079 2.223165117 2.894042691 1 6.088898619 -5.514501632 1.348080499 3.092076688 1.552478117 0.179531065 1.091261498 0.762004751 2.668606414 0.26576899 0.845426149 3.06E-06 5.514501632 -1.539598571 AIMTYVSSFYHAFSGAQK ddPTM_HeLa_CUDC101_4h_R1 1 AIMTYVSSFYHAFSGAQK 18 0 O43707;P12814-4;P12814-3;P12814;P12814-2;H9KV75;G3V2N5;G3V2W4 O43707;P12814-4 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 0 0 159.69 1.85E-05 1475000 400.38 559.19 310.03 479.03 448.11 332.06 395.93 283.77 346 255.03 FALSE FALSE TRUE 353.4480633 576.4179811 326.7911596 498.5669139 415.0538181 325.7265087 411.2011527 316.0732298 331.7377336 253.5130702 1.394200556 2.273720959 1.289050538 1.966631991 1.637208755 1.284850949 1.622011648 1.246772916 1.308562644 1 7.985916319 -8.196739361 1.178826627 1.078505147 1.604250242 0.223276728 0.31810664 0.325680079 0.933775817 0.081909518 0.061172872 6.36E-09 8.196739361 0.525745095 ELDLS(ph)ELDDPDSAYLQEAR ddPTM_HeLa_CUDC101_4h_R1 1 ELDLSELDDPDSAYLQEAR 19 0 Q9UER7-3;Q9UER7;Q9UER7-2;Q9UER7-5;Q9UER7-4 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 ELDLS(1)ELDDPDSAYLQEAR 77.468 0.008412 4261100 1057.7 595.02 607.47 569.83 787.17 735.44 654.94 830.07 907.17 607.28 TRUE FALSE FALSE 933.7180094 613.3518609 640.3116657 593.0701304 729.1020374 721.4127073 680.2012552 924.5618135 869.7760686 603.6678716 1.546741268 1.016041916 1.060701912 0.982444417 1.207786718 1.195049035 1.126780614 1.531573663 1.440818883 1 9.23761121 -9.827959758 1.882508017 0.999000321 1.257474485 0 0.23230942 0.533817004 3.426403749 0.165346186 0.033882583 1.49E-10 9.827959758 0.258474163 GAS(ph)PDMAPILEPVDR ddPTM_HeLa_CUDC101_4h_R1 4 GASPDMAPILEPVDR 15 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR;GAS(1)PDMAPILEPVDR ;;; 200 1.91E-16 47784900 6159.5 4895.18 4601.34 3901.14 4807.35 5096.56 4599.65 4992.49 5052.02 4584.98 TRUE FALSE FALSE 5437.492747 5045.994694 4850.102359 4060.245351 4452.721368 4999.351609 4777.060041 5560.814881 4843.773597 4557.708335 1.193032188 1.107134183 1.064153737 0.890852387 0.976964966 1.096900293 1.048127631 1.220090114 1.062765153 1 12.15409289 -9.827383848 1.883083018 0.999672425 1.09095116 0 0.092981766 0.707008916 4.542700603 0.07730542 0.015866591 1.49E-10 9.827383848 0.091278735 ASHGYGGK(ac)FGVEQDR ddPTM_HeLa_CUDC101_4h_R1 2 ASHGYGGKFGVEQDR 15 1 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 1 ; ASHGYGGK(1)FGVEQDR;ASHGYGGK(1)FGVEQDR 176.08 3.10E-07 30564000 4434.2 6878.7 8976 11194 11791.7 10554.6 10931.4 10197.3 4673.7 4542.6 FALSE TRUE FALSE 3914.429798 7090.624594 9461.269711 11650.5397 10921.84978 10353.28859 11353.02776 11358.11941 4481.048108 4515.580413 0.866871906 1.570257629 2.095249967 2.580075791 2.418703419 2.29279243 2.514190142 2.515317716 0.992352632 1 12.14069572 -6.867365184 1.903369167 0.934060953 2.452216979 0.976633295 0.102398415 0.031735453 0.233371333 0.018521713 0.025564862 1.36E-07 6.867365184 1.518156026 up MS(ph)DYSPNSTGSVQNTSR ddPTM_HeLa_CUDC101_4h_R1 1 MSDYSPNSTGSVQNTSR 17 0 H7C1W4;Q93075 H7C1W4 TATDN2 Putative deoxyribonuclease TATDN2 1 0 MS(0.984)DY(0.001)S(0.014)PNSTGSVQNTSR 97.904 0.0078078 4300200 1504.7 1275.7 1232.7 1301.8 1392 1354.3 927.38 1363 1251 1492.2 TRUE FALSE FALSE 1328.321347 1315.002805 1299.343491 1354.893031 1289.314933 1328.468984 963.1493573 1518.158411 1199.433251 1483.324328 0.895502974 0.886524127 0.875967222 0.913416577 0.869206356 0.895602505 0.649318115 1.023483794 0.808611595 1 10.53461836 -9.816735847 0.22048797 1.115084065 0.835080096 0 0.105786944 8.94953889 0.49942246 0.701238246 0.093977966 1.52E-10 9.816735847 -0.28000397 SRS(ph)PGSPVGEGTGSPPK ddPTM_HeLa_CUDC101_4h_R1 1 SRSPGSPVGEGTGSPPK 17 1 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;P35611-5;A0A0A0MSR2 E7EV99 ADD1 Alpha-adducin 1 0 S(0.056)RS(0.577)PGS(0.366)PVGEGTGS(0.001)PPK 86.136 0.0050357 63585000 2478.1 2060 2289.8 2272.6 2447.3 2332.5 2330.9 2922.9 2430.3 1193.9 TRUE FALSE FALSE 2187.620875 2123.466158 2413.593514 2365.286451 2266.767555 2288.011449 2420.803594 3255.631121 2330.122005 1186.79863 1.843295754 1.789238802 2.033700961 1.992997289 1.909984978 1.927885145 2.039776196 2.743204314 1.963367624 1 10.21285945 -9.816204581 0.18231575 5.46E-20 2.424892333 0.211806004 0.353062668 3.966156626 0.170456208 2.344905305 0.401958421 1.53E-10 9.816204581 2.424892333 SCGLNPK(ac)LEK ddPTM_HeLa_CUDC101_4h_R1 2 SCGLNPKLEK 10 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 0 1 ; SCGLNPK(1)LEK;SCGLNPK(1)LEK 94.465 0.015007 1195900 1027.09 847.83 808.43 1193.48 1292.16 1286.83 1446.89 1182.13 857.02 385.82 FALSE TRUE FALSE 906.6960672 873.9506374 852.1361712 1242.155273 1196.839931 1262.285862 1502.697032 1316.698901 821.6932729 383.5251255 2.364111259 2.278731116 2.221852271 3.238784608 3.120629788 3.291272926 3.918118872 3.433149 2.142475729 1 8.583177284 -6.861749136 0.153387742 1.33E-15 5.099178732 0.738385943 0.414202137 1.004496852 0.109346846 1.37666038 1.905607328 1.37E-07 6.861749136 5.099178732 AAPGAEFAPNK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 AAPGAEFAPNKR 12 1 Q15233;Q15233-2 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 1 ; AAPGAEFAPNK(1)R;AAPGAEFAPNK(1)R 146.11 0.00019292 198329000 1379.37 1539.35 1800.02 1885.72 1949.18 1973.25 2195.8 2133.03 747.62 793.52 FALSE TRUE FALSE 1217.68234 1586.775549 1897.334526 1962.627812 1805.392875 1935.613544 2280.492742 2375.845513 716.8027872 788.8001077 1.543714723 2.011632013 2.40534263 2.488118084 2.288783758 2.45387079 2.891090809 3.011974124 0.908725519 1 9.623515939 -6.858287243 0.350967153 0.920395005 3.072024442 0.943233801 0.165217688 0.23392564 0.074576311 0.114341944 0.192479146 1.39E-07 6.858287243 2.151629437 up TGS(ph)PGSPGAGGVQSTAK ddPTM_HeLa_CUDC101_4h_R1 1 TGSPGSPGAGGVQSTAK 17 0 O43237;O43237-2;J3KRZ2;J3KRI4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 T(0.016)GS(0.916)PGS(0.068)PGAGGVQSTAK 127.91 0.00027238 39175000 1685.3 1768.6 1227.1 1320.2 1656.1 1457.3 1157.8 1519.6 1560.1 2000.8 TRUE FALSE FALSE 1487.751689 1823.08847 1293.440738 1374.043462 1533.932802 1429.504431 1202.456734 1692.585122 1495.792018 1988.899153 0.748027715 0.91663193 0.650329976 0.690856276 0.77124715 0.718741535 0.604584065 0.85101606 0.752070318 1 10.95775441 -9.81253588 0.329116879 1.169499827 0.709615179 0.006695421 0.114654924 2.389218299 0.253087419 0.419903227 0.036209217 1.54E-10 9.81253588 -0.459884648 T(ph)PLSEAEFEEIMNR ddPTM_HeLa_CUDC101_4h_R1 2 TPLSEAEFEEIMNR 14 0 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 0 T(1)PLSEAEFEEIMNR;T(1)PLSEAEFEEIMNR ; 135.02 0.0032801 3313500 303.54 494.27 446.56 250.523 337.45 301.66 357.825 470.55 410.404 438.08 TRUE FALSE FALSE 267.9595013 509.4978728 470.7023844 260.7404108 312.5569858 295.9063381 371.6264301 524.11551 393.4869734 435.4742807 0.615327961 1.169983844 1.080895946 0.598750425 0.717739255 0.679503592 0.853383188 1.203551009 0.903582579 1 8.766443705 -9.810019472 1.835114426 1.000594008 0.81429042 0 0.217265844 0.775780559 4.728444026 0.16943259 0.035099596 1.55E-10 9.810019472 -0.186303588 AGGDLSLS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 3 AGGDLSLSPGR 11 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 AGGDLSLS(1)PGR;AGGDLSLS(1)PGR;AGGDLS(0.01)LS(0.99)PGR ;; 187.58 7.08E-11 139594000 7058 6547.7 5635.7 6105.7 7250.8 5514.4 5201.1 6802.5 7413.7 7045.4 TRUE FALSE FALSE 6230.671939 6749.426876 5940.382989 6354.716837 6715.92293 5409.222008 5401.708169 7576.869103 7108.104148 7003.493647 0.889651973 0.963722853 0.84820281 0.907363833 0.958938962 0.772360522 0.771287652 1.081869919 1.014936902 1 12.77385907 -9.809897636 0.380859117 1.062225254 0.884322482 0.191293178 0.087736012 4.952379482 0.68716178 0.378205362 0.029578158 1.55E-10 9.809897636 -0.177902773 KASS(ph)PS(ph)PLTIGTPESQR ddPTM_HeLa_CUDC101_4h_R1 1 KASSPSPLTIGTPESQR 17 1 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 2 0 KAS(0.11)S(0.893)PS(0.798)PLT(0.184)IGT(0.007)PES(0.008)QR 127.91 4.97E-05 0 1532.3 1584.3 1202 1185 1304.7 1633.7 1399.6 1302.2 1293.1 1095.3 TRUE FALSE FALSE 1352.686117 1633.110405 1266.983756 1233.329422 1208.45488 1602.539894 1453.583041 1450.437184 1239.797871 1088.785107 1.242381172 1.499938229 1.16366742 1.132757432 1.109911288 1.471860594 1.335050444 1.332161117 1.138698411 1 10.08850352 -9.809769356 0.325811261 0.809034146 1.311103314 0.253765289 0.134078689 3.713606583 0.387005979 0.706717162 0.061657898 1.55E-10 9.809769356 0.502069168 RFS(ph)FCCSPEPEAEAEAAAGPGPCER ddPTM_HeLa_CUDC101_4h_R1 2 RFSFCCSPEPEAEAEAAAGPGPCER 25 1 Q13501;E7EMC7;E3W990;D6RBF1;C9J6J8 Q13501 SQSTM1 Sequestosome-1 1 0 RFS(0.818)FCCS(0.182)PEPEAEAEAAAGPGPCER;RFS(0.5)FCCS(0.5)PEPEAEAEAAAGPGPCER ; 118.41 5.13E-10 50468000 1593.73 1377.49 1465.56 1510.91 1659.5 1465.85 1551.59 1698.34 1815.48 680.69 TRUE FALSE FALSE 1406.915385 1419.928834 1544.792607 1572.531441 1537.081991 1437.891354 1611.435346 1891.672161 1740.645146 676.6412256 2.079263474 2.098495895 2.283030575 2.324025467 2.271635149 2.125042488 2.381521085 2.795679733 2.572478708 1 9.402247268 -9.808759412 0.2599294 2.61E-18 2.525538259 0 0.518730196 1.291251609 0.092551309 1.034691558 0.11402527 1.55E-10 9.808759412 2.525538259 S(ph)RDAT(ph)PPVSPINMEDQER ddPTM_HeLa_CUDC101_4h_R1 2 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 2 0 S(1)RDAT(1)PPVSPINMEDQER;S(1)RDAT(1)PPVSPINMEDQER ; 86.617 0.0095925 13337600 3028.3 2738.2 2688.6 2660.4 2792.7 2294.2 2514.64 2887.4 3479.5 3075.9 TRUE FALSE FALSE 2673.327265 2822.560696 2833.953849 2768.902611 2586.688085 2250.441957 2611.630507 3216.089945 3336.073537 3057.60441 0.874320843 0.923128148 0.926854317 0.905579087 0.845985202 0.736014754 0.854142707 1.051833237 1.091074282 1 11.57818605 -9.800781272 0.432592925 1.060485693 0.877426296 0.347447184 0.080398427 3.460300879 0.620530991 0.300564451 0.022626257 1.58E-10 9.800781272 -0.183059397 IES(ph)LT(ph)RARIDRS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 IESLTRARIDRSR 13 3 Q92974-2;Q92974 Q92974-2 ARHGEF2 Rho guanine nucleotide exchange factor 2 3 0 IES(1)LT(1)RARIDRS(1)R 70.272 0.028522 46346000 2426.6 741.97 654.03 700.87 2787.8 1729.4 1704.7 1186.3 1569.6 1041.9 TRUE FALSE FALSE 2142.157626 764.8292162 689.3888401 729.454508 2582.149548 1696.414576 1770.45085 1321.343597 1504.900424 1035.702732 2.068313194 0.738464032 0.665624236 0.704308761 2.493137719 1.637935793 1.709419889 1.275794256 1.453023514 1 10.01639426 -9.799736283 1.811054804 0.998666563 1.522844681 0 0.596114898 0.772316918 4.584930176 0.468902416 0.097863158 1.59E-10 9.799736283 0.524178118 SASSEEASESPT(ph)AR ddPTM_HeLa_CUDC101_4h_R1 1 SASSEEASESPTAR 14 0 A0A075B6Q3;Q5H9F3-3 A0A075B6Q3 BCORL1 1 0 SAS(0.003)SEEAS(0.317)ES(0.224)PT(0.456)AR 115.12 0.011276 10915000 2537.5 5883.6 5767.6 6243.8 6747.6 7138.6 4603 2641.5 7972.5 7320.6 TRUE FALSE FALSE 2240.058097 6064.866742 6079.413902 6498.449152 6249.842991 7002.443099 4780.539252 2942.197683 7643.870176 7277.056746 0.307824739 0.833423038 0.835422083 0.89300515 0.85884214 0.962263088 0.656933073 0.404311494 1.050406839 1 12.82913935 -9.797674627 1.807412658 1.00078031 0.660354788 0.213339003 0.209679568 0.482187018 2.851742957 0.189706716 0.039678285 1.59E-10 9.797674627 -0.340425522 AMRAFRMLLY(ph)S(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 AMRAFRMLLYSK 12 2 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 2 0 AMRAFRMLLY(1)S(1)K 70.54 0.0025237 0 2054.7 2226.7 1647.4 1425 1954.9 1969.5 1767.2 1783.4 1995.7 2214.1 TRUE FALSE FALSE 1813.851181 2295.301988 1736.463427 1483.117659 1810.690922 1931.935069 1835.361496 1986.415047 1913.436401 2200.930435 0.824129265 1.042878026 0.788967884 0.673859399 0.822693391 0.877781069 0.833902547 0.902534226 0.869376138 1 11.10389783 -9.795738359 0.437620821 1.080049875 0.833306446 0.05279167 0.096435196 2.940165632 0.541497384 0.347166616 0.026242748 1.60E-10 9.795738359 -0.246743429 EY(ph)DLLMKEKSRLEK ddPTM_HeLa_CUDC101_4h_R1 1 EYDLLMKEKSRLEK 14 3 Q6TFL3-3;Q6TFL3;Q6TFL3-4 Q6TFL3-3 CCDC171 Coiled-coil domain-containing protein 171 1 0 EY(1)DLLMKEKSRLEK 46.704 0.040157 9307200 1012.6 793.58 703.45 675.77 890.55 989.19 719.33 661.63 765.89 752.97 TRUE FALSE FALSE 893.904563 818.0292592 741.4806348 703.3308215 824.8559007 970.3228489 747.0747991 736.9472848 734.31969 748.491301 1.194275153 1.092904164 0.990633604 0.939664657 1.102024699 1.296371578 0.998107524 0.984576953 0.981066432 1 9.547841739 -9.788252022 1.787077836 0.999846897 1.096496859 0.062636484 0.103983429 0.748026907 4.326211926 0.082664878 0.017418322 1.63E-10 9.788252022 0.096649962 EETNGPSNQKPVKS(ph)PDNSIK ddPTM_HeLa_CUDC101_4h_R1 1 EETNGPSNQKPVKSPDNSIK 20 2 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 EETNGPSNQKPVKS(0.5)PDNS(0.5)IK 59.429 0.010929 13254000 5645.2 4535.6 4930.3 4545.9 5046.7 4349.4 4308.7 4229.9 5964.5 6278.7 TRUE FALSE FALSE 4983.478214 4675.33646 5196.846931 4731.301451 4674.414995 4266.442442 4474.888002 4711.414718 5718.640785 6241.354013 0.798461072 0.749090093 0.832647358 0.758056896 0.748942455 0.683576421 0.716973912 0.754870611 0.916250027 1 12.60764333 -9.785273618 0.248938218 1.196559031 0.702745107 0.803046317 0.040639443 1.489000767 0.100978521 0.225677013 0.026766653 1.64E-10 9.785273618 -0.493813924 TDDTAQVTS(ph)DYETNNNSDSSDIVQNEDETECLREPLRK ddPTM_HeLa_CUDC101_4h_R1 1 TDDTAQVTSDYETNNNSDSSDIVQNEDETECLREPLRK 38 2 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 TDDTAQVT(0.114)S(0.514)DY(0.121)ET(0.114)NNNS(0.114)DS(0.01)S(0.01)DIVQNEDET(0.002)ECLREPLRK 47.487 0.006558 9290500 2773.4 1765.9 2099.9 2120.8 2525.7 2230.3 2447.7 2277 2518.4 1108.4 TRUE FALSE FALSE 2448.306256 1820.305286 2213.426946 2207.295391 2339.384143 2187.760743 2542.108609 2536.204476 2414.590486 1101.807188 2.222082306 1.652108741 2.008905887 2.003340889 2.123224616 1.985611247 2.307217304 2.301858714 2.191481879 1 10.10565606 -9.78224386 0.494849557 0.509163435 2.115208708 0 0.418125094 0.739657779 0.178006593 0.624634999 0.047623042 1.65E-10 9.78224386 1.606045273 EGSEFSFS(ph)DGEVAEK ddPTM_HeLa_CUDC101_4h_R1 1 EGSEFSFSDGEVAEK 15 0 Q9BVS4-2;Q9BVS4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 0 EGS(0.001)EFS(0.046)FS(0.953)DGEVAEK 95.755 0.0076733 11959000 2117.2 1739 1873.4 1680.2 1968.1 1853.6 1581.8 1528.9 1739.3 2584 TRUE FALSE FALSE 1869.025025 1792.576529 1974.681671 1748.725818 1822.917184 1818.245668 1642.810556 1702.943796 1667.605318 2568.630253 0.727634903 0.697872544 0.768768361 0.680800912 0.709684542 0.707865862 0.639566771 0.662977396 0.649219683 1 11.32678352 -9.781372796 0.323890161 1.195235168 0.666885583 0 0.115056776 0.742164425 0.077713233 0.147710422 0.013373709 1.65E-10 9.781372796 -0.528349585 AISTICSLEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AISTICSLEKK 11 1 Q9UJX3-2;Q9UJX3 Q9UJX3-2 ANAPC7 Anaphase-promoting complex subunit 7 0 1 ; AISTICSLEK(1)K;AISTICSLEK(1)K 224.64 6.72E-20 1129060 668.05 220.051 254.69 498.09 582.22 714.36 238.07 401.054 377.55 142.33 FALSE TRUE FALSE 589.7421917 226.8305105 268.4593118 518.4042631 539.2707905 700.7347732 247.2524396 446.7083662 361.9872292 141.4834148 4.168277903 1.603230391 1.897461353 3.664063832 3.811547744 4.952769722 1.747571897 3.157319653 2.558513516 1 7.144489135 -6.250151749 24.23761979 2.412143358 3.47287272 0.238862958 1.069411362 851.4086623 1828204.34 0.211482221 0.348513301 5.62E-07 6.250151749 1.060729361 SPAEAKS(ph)PEKEEAK ddPTM_HeLa_CUDC101_4h_R1 1 SPAEAKSPEKEEAK 14 2 P12036-2;P12036 P12036-2 NEFH Neurofilament heavy polypeptide 1 0 S(0.052)PAEAKS(0.948)PEKEEAK 68.845 0.040646 18646000 3840.2 3477.6 2938.3 3665.9 3201.2 2914.3 3420.6 2929.9 3483 4108.8 TRUE FALSE FALSE 3390.057577 3584.740734 3097.153386 3815.411247 2965.053854 2858.714583 3552.533688 3263.427973 3339.429266 4084.360675 0.830009357 0.877674872 0.758295761 0.934151401 0.725952992 0.699917272 0.869789416 0.799005826 0.817613705 1 11.99589456 -9.780216271 0.29575951 1.130473224 0.784225235 0.015912935 0.087382123 3.05472669 0.273775799 0.370949692 0.036565144 1.66E-10 9.780216271 -0.346247989 AITHLNNNFMFGQK ddPTM_HeLa_CUDC101_4h_R1 2 AITHLNNNFMFGQK 14 0 P14866;M0QXS5;A0A3B3ITJ4;P14866-2;M0QYT0 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 0 ; ; 85.973 0.01879 1104460 635.57 518.16 623.77 496.49 676.04 598.7 507.39 594.7 655.42 405.24 FALSE FALSE TRUE 561.0694481 534.1238954 657.492893 516.7390082 626.1698761 587.280795 526.9602023 662.3982441 628.4033102 402.8296145 1.392820756 1.325930061 1.632186089 1.282773137 1.554428606 1.457888829 1.308146629 1.644363325 1.55997297 1 8.654025938 -9.144905318 0.426235 0.884020659 1.477036252 0 0.211347708 0.789286133 0.202965343 0.207523152 0.035733477 7.16E-10 9.144905318 0.593015592 AGS(ph)PGEEQAHSCSTLSLLSEK ddPTM_HeLa_CUDC101_4h_R1 2 AGSPGEEQAHSCSTLSLLSEK 21 0 A0A0C4DGC7;Q9NZ71-5;Q9NZ71-9;Q9NZ71-8;Q9NZ71-4;Q9NZ71;Q9NZ71-7;Q9NZ71-6;Q9NZ71-2 A0A0C4DGC7 RTEL1 Regulator of telomere elongation helicase 1 1 0 AGS(1)PGEEQAHSCSTLSLLSEK;AGS(0.994)PGEEQAHS(0.006)CSTLSLLSEK ; 143.25 5.23E-07 34661000 6561.2 3999.1 3909.1 3146.1 6400.3 5508.2 4702.1 4056.3 5256.7 4077.5 TRUE FALSE FALSE 5792.106082 4122.307531 4120.43777 3274.411557 5928.16262 5403.140262 4883.461572 4518.052796 5040.016601 4053.246849 1.42900403 1.017038361 1.016577061 0.807849035 1.462571327 1.333040021 1.204827082 1.114674967 1.243451679 1 11.98486232 -9.780109364 1.765763712 0.999671585 1.215447636 0 0.207499766 0.641693814 3.620950473 0.156773056 0.033160783 1.66E-10 9.780109364 0.215776051 SRWDETPASQMGGS(ph)TPVLTPGK ddPTM_HeLa_CUDC101_4h_R1 3 SRWDETPASQMGGSTPVLTPGK 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 SRWDETPASQMGGS(0.46)T(0.46)PVLT(0.081)PGK;SRWDETPASQMGGS(0.799)T(0.199)PVLT(0.001)PGK;SRWDETPASQMGGS(0.773)T(0.225)PVLT(0.001)PGK ;; 98.491 0.00010715 60632000 8409.5 7235.3 7365 6995.1 8373.9 7937.4 7658 6850.5 7478 6556 TRUE FALSE FALSE 7423.751158 7458.211017 7763.174178 7280.390413 7756.17408 7786.00732 7953.371625 7630.333229 7169.753675 6517.00462 1.139135476 1.144423159 1.191218149 1.117137525 1.19014402 1.194721774 1.220402944 1.170834405 1.100160901 1 12.6699933 -9.778513652 0.241072886 0.859365729 1.210651259 0.57096898 0.039741519 1.632573022 0.105789901 0.171790323 0.021309826 1.67E-10 9.778513652 0.351285531 ILQSQDFSLDS(ph)SAEEEGLR ddPTM_HeLa_CUDC101_4h_R1 2 ILQSQDFSLDSSAEEEGLR 19 0 Q5T8I3-2;Q5T8I3 Q5T8I3-2 FAM102B Protein FAM102B 1 0 ILQSQDFS(0.135)LDS(0.585)S(0.28)AEEEGLR;ILQS(0.014)QDFS(0.011)LDS(0.714)S(0.262)AEEEGLR ; 140.32 5.29E-05 10054600 1622.6 1417.45 1107.07 1389.09 1400.03 1469.72 1189.93 1096.64 1742.62 1688.61 TRUE FALSE FALSE 1432.401288 1461.119954 1166.921553 1445.743094 1296.752576 1441.68754 1235.825999 1221.477065 1670.788466 1678.566073 0.853348171 0.870457218 0.695189526 0.861296507 0.772535915 0.858880424 0.736239114 0.727690786 0.995366517 1 10.71301361 -9.776841711 0.187013018 1.205647965 0.720797807 0.712968215 0.053701546 4.757901019 0.215265566 0.574163572 0.098115832 1.67E-10 9.776841711 -0.484850157 AIVAIENPADVSVISSR ddPTM_HeLa_CUDC101_4h_R1 1 AIVAIENPADVSVISSR 17 0 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 RPSA 40S ribosomal protein SA 0 0 134.21 0.039363 269760 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 AIYHDLEQSIR ddPTM_HeLa_CUDC101_4h_R1 2 AIYHDLEQSIR 11 0 A0A0U1RR22;Q9UNF0;Q9UNF0-2 A0A0U1RR22 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 0 0 ; ; 172.21 6.01E-11 3696400 7827.9 6089.8 6278.4 5746.6 7686.8 7486.2 6648.1 6002.6 6735.3 6679.1 FALSE FALSE TRUE 6910.325428 6277.41952 6617.829295 5980.971187 7119.760078 7343.413208 6904.519444 6685.911721 6457.668083 6639.372416 1.040810034 0.945483869 0.996755247 0.900833816 1.072354378 1.106040262 1.039935556 1.007009594 0.972632303 1 12.69683116 AK(ac)EQSQAK(ac)SEK ddPTM_HeLa_CUDC101_4h_R1 2 AKEQSQAKSEK 11 2 Q92613 Q92613 JADE3 Protein Jade-3 0 2 ; AK(1)EQSQAK(1)SEK;AK(1)EQSQAK(1)SEK 185.25 1.19E-05 1533680 286.45 448.65 257.38 343.262 470.74 450.846 312.8 394.89 65.58 158.32 FALSE TRUE FALSE 252.8727652 462.4723747 271.2947413 357.2617081 436.014448 442.2468637 324.8648008 439.8426814 62.87676464 157.3783056 1.606782868 2.938603087 1.72383824 2.270082313 2.770486354 2.810087846 2.064228609 2.794811392 0.399526252 1 7.298092871 -7.635321548 0.622111784 1.052081544 2.560871325 0.697948308 0.447090588 0.261003274 0.229597354 0.136475673 0.12188361 2.32E-08 7.635321548 1.50878978 AK(ac)FENLCK ddPTM_HeLa_CUDC101_4h_R1 1 AKFENLCK 8 1 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 0 1 AK(1)FENLCK 128.36 0.0027925 3276500 3752.5 846.65 416.39 924.52 2108.3 1719.3 1616.8 1233.8 714.06 137.05 FALSE TRUE FALSE 3312.637638 872.734283 438.9013029 962.2259217 1952.774909 1686.507217 1679.160518 1374.250805 684.6261446 136.2348205 24.31564578 6.406102931 3.221652888 7.062995482 14.33388984 12.3794138 12.32548706 10.08736826 5.025338911 1 7.089951681 -5.747011531 24.82237153 10 12.29166886 0.047582733 6.222632332 1183.218463 2035652.867 1.351624669 2.693258264 1.79E-06 5.747011531 2.291668862 K(ac)QQVLETVAGK ddPTM_HeLa_CUDC101_4h_R1 1 KQQVLETVAGK 11 1 A0A1W2PNW4;P17948-4;P17948-2;P17948-3;P17948 A0A1W2PNW4 FLT1 Vascular endothelial growth factor receptor 1 0 1 K(1)QQVLETVAGK 89.029 0.024923 2120500 1184.8 1782 1878.5 2852.8 2762.1 2922.4 2689.2 3137.8 652.59 490.56 FALSE TRUE FALSE 1045.91954 1836.901308 1980.057392 2969.149515 2558.345386 2866.660089 2792.923345 3494.994469 625.689964 487.6421273 2.144850663 3.766904467 4.060472386 6.088787963 5.246358431 5.878614518 5.727403742 7.167129895 1.283092516 1 8.929678955 -6.84347221 0.644479883 1.196700459 6.378746541 0.941643392 0.493791472 0.101168293 0.087388213 0.124841131 0.202572183 1.43E-07 6.84347221 5.182046081 up AK(ac)LVPSQEETK ddPTM_HeLa_CUDC101_4h_R1 1 AKLVPSQEETK 11 1 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 0 1 AK(1)LVPSQEETK 108.9 0.0059103 5347700 4058.8 3510 4308.4 4016.5 4140.1 3650.8 3609.4 2327.5 3335.3 3716.4 FALSE TRUE FALSE 3583.033617 3618.13894 4541.325136 4180.310231 3834.693071 3581.167073 3748.615767 2592.453192 3197.817522 3694.294688 0.969883001 0.979385578 1.229280694 1.131558412 1.038004111 0.96937775 1.014704046 0.701745099 0.865609756 1 11.85108324 -4.261423262 11.86829158 1.014882103 0.7014982 0.510752987 0.093794471 0.038275764 453.9144901 0.012304266 0.094842869 5.48E-05 4.261423262 -0.313383903 AK(ac)MQASIEK ddPTM_HeLa_CUDC101_4h_R1 1 AKMQASIEK 9 1 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 0 1 AK(1)MQASIEK 137.95 0.0020993 1437100 656.04 449.72 218.8 446.7 329.8 357.78 441.69 207.17 0 50.205 FALSE TRUE FALSE 579.1399857 463.5753402 230.6289898 464.9183568 305.4713111 350.9559426 458.7261313 230.7533954 0 49.90637843 11.6045284 9.288899631 4.621232738 9.315810352 6.120887163 7.032286326 9.191733516 4.623725517 0 1 5.64115231 -5.020495871 22.40854506 6.524094619 7.208797833 0 3.587842739 1641.932888 1795183.473 0.594912719 1.542016374 9.54E-06 5.020495871 0.684703214 AK(ac)WDAWNELK ddPTM_HeLa_CUDC101_4h_R1 1 AKWDAWNELK 10 1 B8ZWD1;A0A0A0MTI5;P07108;P07108-3;P07108-2;P07108-4;P07108-5 B8ZWD1 DBI Acyl-CoA-binding protein 0 1 AK(1)WDAWNELK 150.1 0.0004108 313150 159.84 61.767 0 48.702 61.642 60.065 130.8 140.09 132.57 0 FALSE TRUE FALSE 141.1037975 63.66996806 0 50.68827807 57.09479247 58.9193602 135.8449998 156.0372793 127.1054085 0 0 S(ph)EESPVYSNSSVR ddPTM_HeLa_CUDC101_4h_R1 1 SEESPVYSNSSVR 13 0 H0Y8J2;Q03188 H0Y8J2 CENPC Centromere protein C 1 0 S(0.949)EES(0.05)PVYS(0.001)NSSVR 141.59 0.00070066 30860000 1263.9 1085.6 1085.3 1000.6 1028.8 1134.7 977.64 914.4 1381.9 1415.8 TRUE FALSE FALSE 1115.747558 1119.046049 1143.974601 1041.408793 952.9074737 1113.057488 1015.347902 1018.4916 1324.937497 1407.378759 0.792784139 0.795127852 0.812840604 0.739963415 0.677079619 0.790872735 0.72144609 0.723679815 0.941422122 1 10.45879493 -9.77340532 0.264671459 1.183604351 0.711526421 0.850682819 0.036868042 1.392747505 0.104515278 0.211509845 0.023630968 1.68E-10 9.77340532 -0.47207793 SAES(ph)PTSPVTSETGSTFK ddPTM_HeLa_CUDC101_4h_R1 3 SAESPTSPVTSETGSTFK 18 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 SAES(0.658)PT(0.167)S(0.167)PVT(0.001)S(0.004)ET(0.002)GSTFK;SAES(0.995)PT(0.004)SPVTSETGSTFK;S(0.013)AES(0.527)PT(0.222)S(0.222)PVT(0.007)S(0.009)ET(0.001)GSTFK ;; 176.42 1.25E-07 84367000 5868.1 5296.2 4904.9 5120.5 5270.3 4992.8 4860.25 5100.2 5452.6 5684.1 TRUE FALSE FALSE 5180.250213 5459.369644 5170.073731 5329.336123 4881.520469 4897.570659 5047.711471 5680.786152 5227.84152 5650.29072 0.91681127 0.966210398 0.915010216 0.943196799 0.86394147 0.866782065 0.893354293 1.005397144 0.925234077 1 12.46410938 -9.770449789 0.369349257 1.046749877 0.910987149 0.001589974 0.047071898 3.212130728 0.429999207 0.182074112 0.01520709 1.70E-10 9.770449789 -0.135762728 AKDDATLSGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 AKDDATLSGKR 11 2 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 1 ; AKDDATLSGK(1)R;AKDDATLSGK(1)R 126.66 0.0019798 109109000 15954.8 18698.8 19028.2 23075.9 28636 23192.3 22462.3 22884.6 15599.5 13765.4 FALSE TRUE FALSE 14084.60253 19274.88786 20056.92205 24017.03494 26523.57933 22749.94552 23328.67844 25489.69036 14956.48201 13683.52279 1.029311147 1.408620292 1.465771816 1.755179227 1.938358984 1.662579576 1.704873723 1.862801762 1.093028618 1 13.74015208 -6.844599491 1.257435784 1.004379116 1.785780857 0.919285572 0.094370457 0.067338028 0.212267485 0.016483152 0.023728743 1.43E-07 6.844599491 0.781401742 EATAPGK(ac)WK ddPTM_HeLa_CUDC101_4h_R1 3 EATAPGKWK 9 1 F8WCC1;E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2;H0Y7D3 F8WCC1 CHTF18 Chromosome transmission fidelity protein 18 homolog 0 1 ;; EATAPGK(1)WK;EATAPGK(1)WK;EATAPGK(1)WK 130.75 8.53E-07 0 1589.26 1674.35 2397.42 2559.97 3329.84 3057 2518.63 3215.24 872.37 853.31 FALSE TRUE FALSE 1402.969352 1725.934739 2527.031777 2664.376642 3084.204337 2998.692818 2615.774403 3581.249925 836.4105394 848.2344742 1.653987659 2.034737789 2.979166556 3.141085069 3.636028045 3.535216865 3.083786951 4.222004686 0.986060535 1 9.728319308 -6.843091498 0.721142374 1.157602277 3.68776746 0.928280164 0.288700553 0.107017425 0.113487405 0.066908586 0.105974855 1.44E-07 6.843091498 2.530165183 up SCDGAAGLPEVPAES(ph)SSSPPGSEVASLTQPEK ddPTM_HeLa_CUDC101_4h_R1 1 SCDGAAGLPEVPAESSSSPPGSEVASLTQPEK 32 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 SCDGAAGLPEVPAES(0.304)S(0.304)S(0.304)S(0.072)PPGS(0.01)EVAS(0.002)LT(0.002)QPEK 52.669 0.0019452 0 903.25 509.98 432.75 586.93 679.61 613.72 673.86 630.32 619.55 504.14 TRUE FALSE FALSE 797.3724042 525.6918793 456.145774 610.8675423 629.4765243 602.0143135 699.8510059 702.073081 594.0118868 501.1413529 1.591112766 1.048989225 0.910213798 1.218952575 1.256085774 1.201286444 1.396514181 1.400948209 1.185318041 1 8.96907378 -9.767785449 1.737030837 0.99966878 1.301678288 0.025689829 0.19192991 0.479406414 2.616968833 0.161617294 0.034441009 1.71E-10 9.767785449 0.302009508 SYS(ph)PDGK ddPTM_HeLa_CUDC101_4h_R1 1 SYSPDGK 7 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 S(0.1)YS(0.9)PDGK 123.21 0.01157 529560000 8442 1963.1 8725.3 8414 3571.6 3541.7 4279.9 1600.9 8909.8 12450 TRUE FALSE FALSE 7452.441557 2023.580784 9197.016111 8757.159288 3308.130184 3474.147973 4444.977177 1783.139985 8542.534273 12375.94685 0.602171426 0.163509169 0.743136362 0.707595095 0.267303199 0.280717752 0.359162594 0.144081096 0.690252987 1 13.59525129 -9.763576355 0.132808643 1.791970842 2.70E-12 0.455570961 0.203498202 10.67739639 0.316480337 3.826264411 0.998972092 1.72E-10 9.763576355 -1.791970842 DPTDEGIFISKVS(ph)PTGAAGR ddPTM_HeLa_CUDC101_4h_R1 1 DPTDEGIFISKVSPTGAAGR 20 1 A0A0G2JMS7;A0A0G2JNZ2;A0A669KB89;Q14160-2;Q14160;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 0 DPTDEGIFIS(0.18)KVS(0.574)PT(0.245)GAAGR 49.613 0.035789 5349100 870.11 614.51 502.77 544.75 752.42 771.2 551.62 721.85 563.27 585.62 TRUE FALSE FALSE 768.1170248 633.4423247 529.951267 566.9672596 696.9154756 756.4906449 572.8961682 804.0224862 540.0517722 582.1367062 1.31947877 1.088133282 0.910355354 0.97394178 1.197168068 1.299506863 0.984126515 1.381157514 0.927706098 1 9.185214178 -9.759579264 1.720268364 0.999909672 1.164724856 0.159747157 0.153633926 0.644995156 3.453940515 0.11759649 0.025213596 1.74E-10 9.759579264 0.164815184 AKEQEAEPEEQEEDSSSDPR ddPTM_HeLa_CUDC101_4h_R1 2 AKEQEAEPEEQEEDSSSDPR 20 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 0 0 ; ; 154.19 1.63E-05 11841000 3312.3 2722.6 2621.4 2920.4 3319.4 2573.7 3150.2 2995.9 3006.9 3114.9 FALSE FALSE TRUE 2924.037215 2806.480079 2763.120813 3039.506535 3074.534475 2524.610961 3271.704269 3336.941146 2882.954309 3096.372436 0.944342864 0.90637678 0.892373534 0.98163467 0.992947243 0.815344734 1.056624917 1.077693725 0.931074788 1 11.5963633 -4.555154121 24.99768146 0.955336263 1.072426965 0.448051453 0.055495242 121.6394923 94211.09186 0.0078452 0.029354458 2.79E-05 4.555154121 0.117090701 AKFEELNMDLFR ddPTM_HeLa_CUDC101_4h_R1 3 AKFEELNMDLFR 12 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ;; ;; 96.82 0.017748 89916000 9715.3 7590.4 5429.9 7940.8 8185.3 8066.9 7375.8 7177.5 6076.6 4367.6 FALSE FALSE TRUE 8576.487261 7824.251227 5723.456819 8264.660147 7581.486726 7913.037323 7660.287077 7994.557588 5826.119976 4341.621321 1.975411172 1.802149623 1.318276375 1.903588438 1.746233991 1.822599609 1.764383973 1.841376066 1.341922647 1 12.08401818 -9.373706271 0.98425514 0.978054181 1.778331443 0.588471018 0.193468446 0.232328388 0.384854364 0.136325153 0.031559689 4.23E-10 9.373706271 0.800277262 AVTHTSPEDVSFAES(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 AVTHTSPEDVSFAESR 16 0 J3KR97;Q9BTW9;Q9BTW9-4;A0A0J9YVU1;I3L439;A0A0J9YWI5;A0A0J9YVR1 J3KR97 TBCD Tubulin-specific chaperone D 1 0 AVTHT(0.003)S(0.003)PEDVS(0.003)FAES(0.992)R 73.758 0.026286 46346000 2038.8 762.3 549.33 380.89 2585.4 1386.5 1497 920.06 1335.4 831.21 TRUE FALSE FALSE 1799.814955 785.7855595 579.0284414 396.4243405 2394.680193 1360.054823 1554.739791 1024.795911 1280.354247 826.265926 2.178251454 0.951008065 0.700777344 0.479778154 2.898195505 1.646025547 1.881645778 1.240273717 1.5495668 1 9.690462364 -9.758396329 1.716161455 0.999562031 1.608575495 0 0.707316413 0.786410596 4.189671503 0.528965235 0.113392087 1.74E-10 9.758396329 0.609013464 TDS(ph)YSAGQSVEILDGVELGEPAHKK ddPTM_HeLa_CUDC101_4h_R1 2 TDSYSAGQSVEILDGVELGEPAHKK 25 1 B1AKQ2;B1AKP8;P42345 B1AKQ2 MTOR Serine/threonine-protein kinase mTOR 1 0 T(0.186)DS(0.8)Y(0.002)S(0.013)AGQSVEILDGVELGEPAHKK;T(0.041)DS(0.776)Y(0.055)S(0.026)AGQS(0.103)VEILDGVELGEPAHKK ; 157.62 7.80E-11 30032000 4146.2 2584.3 2652.04 2580.31 3165.23 3128.44 3239.18 2993.65 2601.84 2612.16 TRUE FALSE FALSE 3660.188721 2663.91922 2795.417304 2685.546195 2931.737289 3068.770219 3364.116258 3334.435015 2494.591054 2596.622756 1.409595873 1.02591692 1.076558887 1.034245806 1.129057843 1.181831366 1.295573741 1.284143031 0.960705997 1 11.34242072 -9.756737855 1.713272863 0.999888003 1.2119715 0.267748765 0.120865683 0.453924759 2.410527421 0.106142191 0.022787624 1.75E-10 9.756737855 0.212083497 AKIDDPTDSKPEDWDKPEHIPDPDAK ddPTM_HeLa_CUDC101_4h_R1 2 AKIDDPTDSKPEDWDKPEHIPDPDAK 26 3 P27797;K7EJB9;K7EL50 P27797 CALR Calreticulin 0 0 ; ; 45.126 0.016486 164020000 9872 8641.6 8695.7 9730.7 11289.7 9325.4 9171.1 10032.1 9416.5 8382.7 FALSE FALSE TRUE 8714.819125 8907.837453 9165.815845 10127.56001 10456.88132 9147.533532 9524.832399 11174.11371 9028.347884 8332.839328 1.045840293 1.069003866 1.099963108 1.215379249 1.25490015 1.0977691 1.143047649 1.340973139 1.083465975 1 13.02459245 -6.640348692 1.352883313 1.020236902 1.204733573 0.564099053 0.065733635 0.192349108 0.709149734 0.010976498 0.017320544 2.29E-07 6.640348692 0.184496671 SFSEDAVTDSSGS(ph)GTLPR ddPTM_HeLa_CUDC101_4h_R1 1 SFSEDAVTDSSGSGTLPR 18 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 SFSEDAVTDS(0.002)S(0.015)GS(0.739)GT(0.244)LPR 110.32 0.00047907 3367500 2151.6 1181 1478.5 1613.4 1350.1 1585 1733.1 1285 1587.3 1293.1 TRUE FALSE FALSE 1899.39271 1217.38521 1558.432182 1679.201426 1250.505813 1554.768766 1799.946248 1431.279206 1521.870822 1285.408584 1.477656781 0.947080349 1.21240219 1.306356163 0.972846944 1.209552189 1.400291137 1.113481911 1.183958814 1 10.3280113 -9.75163402 1.700462317 0.999862917 1.24885269 0 0.172319776 0.471690779 2.466431852 0.128714418 0.027692377 1.77E-10 9.75163402 0.248989773 KRPESPPS(ph)ILTPPVVPTADK ddPTM_HeLa_CUDC101_4h_R1 1 KRPESPPSILTPPVVPTADK 20 2 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 1 0 KRPES(0.004)PPS(0.491)ILT(0.491)PPVVPT(0.014)ADK 71.376 0.0067928 20824000 2798.7 2524.6 2510.6 2205.5 2524.4 2596.4 2146.4 2196.9 2874.2 3408.8 TRUE FALSE FALSE 2470.640629 2602.379934 2646.33063 2295.449823 2338.180041 2546.877996 2229.187367 2446.986216 2755.724259 3388.524306 0.729119937 0.767998013 0.780968466 0.677418727 0.690029001 0.75161863 0.657863768 0.722139195 0.813252027 1 11.7264414 -9.748358335 0.368136001 1.158475857 0.698490421 0.454848508 0.068285783 0.766803567 0.103294389 0.146627073 0.012603757 1.79E-10 9.748358335 -0.459985436 GSLAEAVGSPPPAAT(ph)PTPT(ph)PPTR ddPTM_HeLa_CUDC101_4h_R1 1 GSLAEAVGSPPPAATPTPTPPTR 23 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 2 0 GS(0.001)LAEAVGS(0.321)PPPAAT(0.655)PT(0.224)PT(0.612)PPT(0.186)R 95.206 0.00012466 0 779.07 542.67 544.35 585.63 617.81 646.01 491.67 596.54 534.77 532.75 TRUE FALSE FALSE 687.7485956 559.3890195 573.7792076 609.5145227 572.2353872 633.6884356 510.6338766 664.4477023 512.7265543 529.5811793 1.298665101 1.056285686 1.083458457 1.150936904 1.080543285 1.196584132 0.9642221 1.254666382 0.968173671 1 9.048708041 -9.744865835 1.68833392 1.00000511 1.156874377 0.260001164 0.095560459 0.436964219 2.253358717 0.074590854 0.016140118 1.80E-10 9.744865835 0.156869266 SPFNSPS(ph)PQDSPR ddPTM_HeLa_CUDC101_4h_R1 1 SPFNSPSPQDSPR 13 0 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 0 SPFNS(0.029)PS(0.942)PQDS(0.029)PR 151.22 0.00029334 6697300 1074.1 981.08 1026.8 654.48 1158.5 975.95 779.63 899.55 959.19 1260.2 TRUE FALSE FALSE 948.1956262 1011.305912 1082.311914 681.1725233 1073.039763 957.3353798 809.7005903 1001.951136 919.6517822 1252.704274 0.756918968 0.807298205 0.863980379 0.543761634 0.856578671 0.764214986 0.64636212 0.79983054 0.734133188 1 10.29083016 -9.744397872 0.37143859 1.138870576 0.732404114 0 0.123585379 2.163257698 0.297048725 0.36797426 0.031626927 1.80E-10 9.744397872 -0.406466461 PEPSK(ac)SAPAPK(ac)K(ac)GSK ddPTM_HeLa_CUDC101_4h_R1 2 PEPSKSAPAPKKGSK 15 3 U3KQK0;Q99877 U3KQK0 HIST1H2BN Histone H2B;Histone H2B type 1-N 0 3 ; PEPSK(1)SAPAPK(1)K(1)GSK;PEPSK(1)SAPAPK(1)K(1)GSK 272.74 1.64E-84 25817000 2858.3 6254.3 12246.6 18067.6 16789.6 15379.9 17300.2 13681.5 785.69 1063.39 FALSE TRUE FALSE 2523.254407 6446.98757 12908.68824 18804.47482 15551.06466 15086.55403 17967.47451 15238.94666 753.3035256 1057.064909 2.387038284 6.09895146 12.21182174 17.78932842 14.71155132 14.27211698 16.99751298 14.41628279 0.712636962 1 10.04584825 -6.830907315 1.838896586 1.599260702 15.64065944 0.966664996 1.176009968 0.037390798 0.257365738 0.197371677 0.276946166 1.48E-07 6.830907315 14.04139873 up AKPVTTNLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 AKPVTTNLKK 10 2 E5RGR5;A0A087WWE7;Q8N0T1-2;Q8N0T1 E5RGR5 C8orf59 Uncharacterized protein C8orf59 0 1 AKPVTTNLK(1)K 112.94 0.0010179 0 714.71 932.33 551.41 689.95 753.61 735.78 326.52 288.18 478.06 318.02 FALSE TRUE FALSE 630.9327772 961.0539822 581.2208925 718.0891432 698.0176917 721.7462224 339.1139858 320.9852463 458.3541645 316.1284029 1.995811738 3.040074772 1.838559545 2.271510996 2.208019543 2.28307933 1.072709642 1.015363515 1.449898713 1 8.304366851 -4.669045844 9.497710529 1.771339062 1.034063698 0.252756293 0.553769839 0.445588824 41.79468737 0.096491038 0.362149329 2.14E-05 4.669045844 -0.737275364 NSNS(ph)PPS(ph)PSSMNQR ddPTM_HeLa_CUDC101_4h_R1 2 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 2 0 NSNS(1)PPS(0.999)PS(0.001)SMNQR;NS(0.002)NS(0.998)PPS(0.962)PS(0.035)S(0.002)MNQR ; 254.72 8.63E-56 185544000 9675.3 8576.6 8254.1 7893.8 9106.1 8144.1 7688.6 8145.1 9824.9 9495.9 TRUE FALSE FALSE 8541.176001 8840.83488 8700.341613 8215.743284 8434.361145 7988.764861 7985.151878 9072.30526 9419.913464 9439.417964 0.904841382 0.936586865 0.921703186 0.870365452 0.893525552 0.846319645 0.84593689 0.961108544 0.997933718 1 13.20448219 -9.743924756 0.279263177 1.073695476 0.876709245 0.602562205 0.03377523 3.03644199 0.252110654 0.200478091 0.021758718 1.80E-10 9.743924756 -0.196986231 (ac)MDLAAAAEPGAGS(ph)QHLEVR ddPTM_HeLa_CUDC101_4h_R1 7 MDLAAAAEPGAGSQHLEVR 19 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 0 MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR ;;;;;; 159.95 2.66E-24 219490000 769.44 310.174 372.02 354.07 461.64 756.385 722.068 321.72 605.5 376.46 TRUE FALSE FALSE 679.2474096 319.7300933 392.1325265 368.510505 427.5857369 741.9582163 749.9184046 358.3433044 580.5410337 374.2207992 1.815097961 0.85438889 1.047864061 0.984740842 1.142602811 1.982674982 2.00394635 0.957571854 1.55133289 1 8.547745936 -9.74341852 1.681436815 0.999812676 1.429150738 0 0.452371064 0.707776774 3.616963121 0.329921665 0.071280373 1.81E-10 9.74341852 0.429338062 CNECGKAFS(ph)VRS(ph)S(ph)LTTHQAIHT(ph)GK ddPTM_HeLa_CUDC101_4h_R1 1 CNECGKAFSVRSSLTTHQAIHTGK 24 2 M0QZI7;Q9HCG1 M0QZI7 ZNF160 Zinc finger protein 160 4 0 CNECGKAFS(0.997)VRS(0.711)S(0.711)LT(0.304)T(0.304)HQAIHT(0.973)GK 45.88 0.0030823 0 277.59 463.24 385.82 423.64 445.25 357.69 465.05 351.67 463.64 530.49 TRUE FALSE FALSE 245.051321 477.5118753 406.6785962 440.9178703 412.4047946 350.8676592 482.9871343 391.7026913 444.528563 527.3346219 0.464697956 0.905519675 0.771196465 0.836125397 0.782055222 0.66536056 0.915902568 0.74279722 0.842972459 1 9.042574909 -9.739637772 1.676539889 0.999966693 0.716950856 0.087944956 0.135787046 0.367638254 1.869022913 0.112556713 0.024423116 1.82E-10 9.739637772 -0.283015837 TYT(ph)HEVVTLWYR ddPTM_HeLa_CUDC101_4h_R1 2 TYTHEVVTLWYR 12 0 G3V5T9;P24941;Q00526;K7EJ83 G3V5T9 CDK2;CDK3 Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 1 0 T(0.06)Y(0.001)T(0.94)HEVVTLWYR;T(0.016)YT(0.984)HEVVTLWYR ; 148.85 0.0010163 44732000 8006.3 4965.5 4211.6 4943 6351.3 5802.8 5570.2 6201.2 4790.2 4629.1 TRUE FALSE FALSE 7067.813651 5118.481169 4439.291835 5144.596905 5882.777253 5692.121258 5785.04448 6907.119542 4592.745928 4601.565907 1.535958366 1.112334643 0.964735033 1.118010045 1.278429424 1.236996573 1.257190399 1.501036752 0.998083266 1 12.16790918 -9.733303838 1.662287539 1.000060722 1.285670934 0.2493302 0.165484376 0.459175777 2.294144718 0.14086288 0.030664871 1.85E-10 9.733303838 0.285610212 GSSGCSEAGGAGHEEGRAS(ph)PLRR ddPTM_HeLa_CUDC101_4h_R1 1 GSSGCSEAGGAGHEEGRASPLRR 23 2 Q9C0C9 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 GSSGCSEAGGAGHEEGRAS(1)PLRR 53.033 0.0119 5205100 2009.4 1015.3 1086 958.05 1732.1 1208.9 1353 990.74 1559.5 888.14 TRUE FALSE FALSE 1773.861178 1046.58019 1144.712445 997.12342 1604.326434 1185.842247 1405.185663 1103.521837 1495.21675 882.8573038 2.009227505 1.185446601 1.29659962 1.129427616 1.817197895 1.343186766 1.591633956 1.2499436 1.693610897 1 9.786036464 -9.730169171 1.657152114 1.000293541 1.539844759 0 0.349749844 0.398005135 1.976778389 0.229923859 0.050192633 1.86E-10 9.730169171 0.539551218 SSGSETEQVVDFS(ph)DRETK ddPTM_HeLa_CUDC101_4h_R1 2 SSGSETEQVVDFSDRETK 18 1 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 SSGSETEQVVDFS(0.603)DRET(0.397)K;SSGSETEQVVDFS(0.966)DRET(0.034)K ; 66.401 0.014393 35241000 3644.3 3409.5 3102.1 3266.1 3280.2 2918.2 3204.9 3247.4 3471.3 3758.7 TRUE FALSE FALSE 3217.120678 3514.542654 3269.808909 3399.305675 3038.226181 2862.540197 3328.514067 3617.07089 3328.211545 3736.343085 0.861034601 0.940637028 0.875136152 0.909794844 0.813155032 0.766134194 0.890848081 0.968077826 0.890767113 1 11.86741122 -9.728564381 0.472762011 1.0557752 0.868832279 0.027671946 0.064988415 1.980214499 0.44693936 0.18645433 0.015338558 1.87E-10 9.728564381 -0.186942921 S(ph)FSADNFIGIQR ddPTM_HeLa_CUDC101_4h_R1 1 SFSADNFIGIQR 12 0 Q8N7R7-3;Q8N7R7-2;Q8N7R7 Q8N7R7-3 CCNYL1 Cyclin-Y-like protein 1 1 0 S(0.972)FS(0.028)ADNFIGIQR 172.85 7.08E-07 9450400 1257.6 838.79 904.49 1145.6 832.42 1044.3 1028.4 1007.2 781.42 929.95 TRUE FALSE FALSE 1110.186034 864.6321257 953.3894653 1192.32252 771.014035 1024.381717 1068.065732 1121.855577 749.2095369 924.418616 1.200955947 0.935325307 1.031339535 1.289807993 0.834052908 1.108136184 1.155391847 1.213579603 0.810465653 1 9.852402503 -9.726511256 1.64313559 0.999977464 1.108072635 0.154379555 0.142734256 0.797968203 3.890524778 0.091878969 0.020017963 1.88E-10 9.726511256 0.108095171 (ac)AS(ph)EAPSPPRS(ph)PPPPTSPEPELAQLR ddPTM_HeLa_CUDC101_4h_R1 2 ASEAPSPPRSPPPPTSPEPELAQLR 25 1 Q8N302;Q8N302-2;Q8N302-3 Q8N302 AGGF1 Angiogenic factor with G patch and FHA domains 1 2 0 AS(0.57)EAPS(0.431)PPRS(0.998)PPPPTSPEPELAQLR;AS(0.651)EAPS(0.354)PPRS(0.994)PPPPTSPEPELAQLR ; 133.98 1.21E-13 10418300 0 147.43 56.881 63.158 142.68 67.598 59.123 0 67.828 129.54 TRUE FALSE FALSE 0 151.9721436 59.95615892 65.73385623 132.1547807 66.30868078 61.40339391 0 65.03210113 128.7694903 0 1.180187505 0.46560842 0.510476947 1.026289537 0.514940927 0.476847379 0 0.505027247 1 7.008647002 -9.724058995 1.640268049 0.999925673 0.460705913 0 0.385892039 0.48158825 2.340886522 0.275980875 0.060301798 1.89E-10 9.724058995 -0.539219761 S(ph)RSSDIVSSVR ddPTM_HeLa_CUDC101_4h_R1 2 SRSSDIVSSVR 11 1 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 S(0.46)RS(0.46)S(0.081)DIVSSVR;S(0.478)RS(0.261)S(0.261)DIVSSVR ; 82.515 0.019875 128016000 3984.2 3202.8 2349.11 2828.6 2903.8 2931.2 2485.1 3511.4 3157.1 2586.1 TRUE FALSE FALSE 3517.178116 3301.474472 2476.109992 2943.962534 2689.592459 2875.292244 2580.951139 3911.123582 3026.963002 2570.717762 1.368169687 1.284261742 0.963197916 1.145190879 1.046241831 1.118478382 1.003980747 1.521413062 1.177477764 1 11.32795551 -9.721361631 1.644343371 1.000315559 1.198911121 0 0.1716127 0.578306311 2.831075877 0.121912657 0.026846822 1.90E-10 9.721361631 0.198595562 TSSVVT(ph)LEVAK ddPTM_HeLa_CUDC101_4h_R1 2 TSSVVTLEVAK 11 0 A8MQ02;J3KN01;P55196-3;P55196;P55196-5;Q5TIG5;P55196-2;P55196-6;P55196-1 A8MQ02 MLLT4 Afadin 1 0 T(0.017)SS(0.112)VVT(0.871)LEVAK;TS(0.001)S(0.056)VVT(0.942)LEVAK ; 191.33 1.18E-10 13192900 5532.7 3874.4 3657.1 3565 4649.8 4385 4036.7 4444.8 3872.4 3726 TRUE FALSE FALSE 4884.165293 3993.765672 3854.813888 3710.396109 4306.793518 4301.363431 4192.396871 4950.778065 3712.778033 3703.837586 1.318676961 1.078277753 1.040762128 1.001770737 1.162792217 1.161326146 1.131906239 1.33666176 1.002413833 1 11.85480512 -9.720010155 1.635221832 1.000123568 1.172632095 0.245976022 0.102817413 0.463356143 2.239935796 0.084627614 0.018574603 1.91E-10 9.720010155 0.172508527 WKGYDS(ph)EDDTWEPEQHLVNCEEYIHDFNRR ddPTM_HeLa_CUDC101_4h_R1 1 WKGYDSEDDTWEPEQHLVNCEEYIHDFNRR 30 2 Q9Y232-2;Q9Y232 Q9Y232-2 CDYL Chromodomain Y-like protein 1 0 WKGY(0.064)DS(0.669)EDDT(0.267)WEPEQHLVNCEEYIHDFNRR 68.238 3.20E-05 13802000 1467.8 1302 1474.7 1401.4 1845.1 1066.5 1614.8 1708.2 1346.9 739.55 TRUE FALSE FALSE 1295.746709 1342.113077 1554.426743 1458.555149 1708.990649 1046.158289 1677.083377 1902.654583 1291.380212 735.1511237 1.762558292 1.825628818 2.114431567 1.984020839 2.324679367 1.423052017 2.281277037 2.588113548 1.756618701 1 9.521897042 -9.719866886 0.188190385 5.23E-15 2.41762708 0.318862519 0.362982767 4.771846421 0.223434125 2.896102165 0.512659412 1.91E-10 9.719866886 2.41762708 (ac)ATTATMATSGS(ph)AR ddPTM_HeLa_CUDC101_4h_R1 3 ATTATMATSGSAR 13 0 I3L3H2;P38919 I3L3H2 EIF4A3 "Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed" 1 0 ATTATMATSGS(1)AR;ATTATMATSGS(1)AR;ATTATMAT(0.002)S(0.02)GS(0.978)AR ;; 183.06 1.03E-32 43363000 353.38 575.79 534.94 764.86 721.39 699.94 614.92 532.32 592.66 869.03 TRUE FALSE FALSE 311.9573321 593.5294074 563.8604745 796.0542968 668.1744969 686.5898107 638.6376704 592.9171571 568.230304 863.8609709 0.361119836 0.687065891 0.652721321 0.921507423 0.773474575 0.794792025 0.739282931 0.686357154 0.657779808 1 9.754655335 -9.718725467 1.636453566 0.999547349 0.653578273 0 0.175401532 0.359012514 1.739634085 0.131411736 0.028937126 1.91E-10 9.718725467 -0.345969076 QPPGTQQSHSS(ph)PGEITSSPQGLDNPALLR ddPTM_HeLa_CUDC101_4h_R1 2 QPPGTQQSHSSPGEITSSPQGLDNPALLR 29 0 Q5TDH0-3;Q5TDH0;Q5TDH0-2 Q5TDH0-3 DDI2 Protein DDI1 homolog 2 1 0 QPPGTQQSHS(0.057)S(0.943)PGEITSSPQGLDNPALLR;QPPGTQQS(0.001)HS(0.085)S(0.912)PGEIT(0.001)SSPQGLDNPALLR ; 144 2.79E-16 123681000 944.02 921.61 954.67 951.81 1004.07 1022.93 880.43 879.22 1381.69 1059.11 TRUE FALSE FALSE 833.3634066 950.0037117 1006.282348 990.6289259 930.0017565 1003.419315 914.38848 979.3068509 1324.736153 1052.810367 0.791560791 0.902350263 0.955805889 0.940937663 0.883351633 0.953086469 0.868521539 0.930183518 1.258285628 1 10.04002988 -9.715708609 1.629507777 0.999853041 0.88655267 0.31682583 0.096563127 0.360067111 1.729547419 0.043015447 0.009483941 1.92E-10 9.715708609 -0.11330037 IPS(ph)AVGYQPTLATDMGT(ph)MQERIT(ph)T(ph)T(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 IPSAVGYQPTLATDMGTMQERITTTK 26 1 P06576;H0YH81;F8W0P7;F8W079;H0YI37 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 5 0 IPS(0.512)AVGY(0.481)QPT(0.15)LAT(0.15)DMGT(0.923)MQERIT(0.928)T(0.928)T(0.928)K 42.904 0.002729 0 0 176.63 150.3 193.7 269.77 264.57 219.13 160.35 133.22 346.5 TRUE FALSE FALSE 0 182.0717609 158.4256726 201.5999232 249.8696046 259.5237681 227.5819175 178.6035958 127.7286152 344.4390026 0 0.528603786 0.459952768 0.585299347 0.725439345 0.753468005 0.660732135 0.518534761 0.370830871 1 8.428104705 -9.713262366 1.625159613 0.999203964 0.45417228 0 0.283500025 0.34643239 1.655339414 0.198588612 0.043864318 1.94E-10 9.713262366 -0.545031684 KLDPAQS(ph)ASRENLLEEQGSIALR ddPTM_HeLa_CUDC101_4h_R1 1 KLDPAQSASRENLLEEQGSIALR 23 2 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 KLDPAQS(0.702)AS(0.298)RENLLEEQGSIALR 47.991 0.022544 25048000 764 1017.1 910.33 765.77 1002.2 993.81 1025 698.36 942.46 1121.1 TRUE FALSE FALSE 674.4450781 1048.435645 959.5451934 797.0014105 928.2697027 974.8547301 1064.534593 777.8584795 903.6113999 1114.431647 0.605191965 0.940780575 0.861017538 0.715164014 0.832953465 0.874755067 0.955226456 0.69798671 0.810827117 1 10.12209242 -9.713045599 1.622559845 0.999751438 0.784377151 0 0.121063046 0.389637825 1.854900624 0.088205521 0.019457902 1.94E-10 9.713045599 -0.215374287 SSVLPS(ph)PSGR ddPTM_HeLa_CUDC101_4h_R1 2 SSVLPSPSGR 10 0 A0A494C1F2;P35658-2;P35658;P35658-5;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 SSVLPS(0.827)PS(0.173)GR;SSVLPS(0.615)PS(0.384)GR ; 109.39 0.0086122 68883000 5105.5 4159.1 3759.1 3815.1 4628 4053.3 4158.9 3571.8 3714.1 3887 TRUE FALSE FALSE 4507.041029 4287.236941 3962.328317 3970.696268 4286.60166 3975.990056 4319.310166 3978.399274 3561.003226 3863.879951 1.166454726 1.109567843 1.025479147 1.027644833 1.109403427 1.029014904 1.117868624 1.029638427 0.921613319 1 11.91583456 -9.712688138 1.625670878 1.000154304 1.090899588 0.351690692 0.054639107 0.410547854 1.963665867 0.039171171 0.008664457 1.94E-10 9.712688138 0.090745285 ALAAFLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 ALAAFLKK 8 1 P39019;M0R2L9;M0QYF7;M0R140 P39019 RPS19 40S ribosomal protein S19 0 1 ; ALAAFLK(1)K;ALAAFLK(1)K 119.57 0.0014487 528390 1601.15 432.52 180.59 416.39 933.81 809.27 815.14 479.01 515.59 0 FALSE TRUE FALSE 1413.465624 445.8454285 190.3532417 433.372184 864.9246967 793.8345231 846.5802229 533.5385622 494.337162 0 0 ENIKPNET(ph)SPSFSK ddPTM_HeLa_CUDC101_4h_R1 1 ENIKPNETSPSFSK 14 1 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHH4;A0A5F9ZHX3;F8W0B5;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 ENIKPNET(0.762)S(0.235)PS(0.003)FSK 138.77 0.0096355 6725200 1131.7 942.97 1172.9 1103.3 959.87 1019.3 857.9 971.3 1236.1 1409.1 TRUE FALSE FALSE 999.0438415 972.021788 1236.310522 1148.297343 889.0623024 999.8585508 890.9894904 1081.868866 1185.147435 1400.718611 0.713236644 0.69394508 0.882625898 0.819791594 0.634718705 0.713818281 0.636094562 0.772367025 0.846099585 1 10.45195145 -9.711860355 0.466602188 1.119667525 0.720109727 0.367815608 0.087907648 1.24143287 0.27531785 0.246786204 0.020782986 1.94E-10 9.711860355 -0.399557798 LGS(ph)LVDEFK ddPTM_HeLa_CUDC101_4h_R1 1 LGSLVDEFK 9 0 P12956;P12956-2;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 1 0 LGS(1)LVDEFK 125.74 0.0043156 27079000 4600.3 4374.4 4088.9 3820.8 4016.8 4247.1 4239.4 3591.6 4323.7 4945.1 TRUE FALSE FALSE 4061.059808 4509.170079 4309.958302 3976.628739 3720.488667 4166.093644 4402.915078 4000.453226 4145.475256 4915.686325 0.826142992 0.91730224 0.87677651 0.808967146 0.756860471 0.847510066 0.895686744 0.813813771 0.84331566 1 12.26317714 -9.71130403 0.480650779 1.067339806 0.836252596 0 0.065793623 1.221133964 0.288722511 0.143591499 0.012108521 1.94E-10 9.71130403 -0.23108721 TQDVLAQDAAGDNLEMMAPS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 TQDVLAQDAAGDNLEMMAPSR 21 0 Q9UPN4-3;Q9UPN4-2;I3L2J8;Q9UPN4 Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa 1 0 TQDVLAQDAAGDNLEMMAPS(1)R 60.618 0.0017464 0 3760.1 5537 3666 4067 4306.4 4164.1 3697.8 3529.7 3883.9 4893.2 TRUE FALSE FALSE 3319.346778 5707.588407 3864.195049 4232.869839 3988.725452 4084.67673 3840.425385 3931.50678 3723.803998 4864.095029 0.68241816 1.173412191 0.794432474 0.87022762 0.820034442 0.839760882 0.789545714 0.808270965 0.765569746 1 12.2479557 -9.708079686 1.601528032 1.00005413 0.825207405 0 0.140592877 0.495307587 2.291030958 0.090357047 0.019845072 1.96E-10 9.708079686 -0.174846724 ALADDDFLTVTGK(ac)TVR ddPTM_HeLa_CUDC101_4h_R1 1 ALADDDFLTVTGKTVR 16 1 A0A3B3IT92;P33991;A0A3B3ITP6;A0A3B3IS57;A0A3B3IU45;E5RG31 A0A3B3IT92 MCM4 DNA replication licensing factor MCM4 0 1 ALADDDFLTVTGK(1)TVR 99.531 0.015947 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MGAPESGLAEYLFDKHTLGDS(ph)DNES ddPTM_HeLa_CUDC101_4h_R1 1 MGAPESGLAEYLFDKHTLGDSDNES 25 1 G3V1D1;G3V192;P02794 G3V1D1 FTH1 "Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed" 1 0 MGAPESGLAEY(0.006)LFDKHT(0.258)LGDS(0.368)DNES(0.368) 54.828 0.0071897 65471000 1312.7 1376.3 1320.6 1328.2 1772.5 1261.3 1346.2 1235.7 1385 1582.6 TRUE FALSE FALSE 1158.827296 1418.702172 1391.995631 1382.369737 1641.746206 1237.242804 1398.123385 1376.367093 1327.909714 1573.186625 0.73661146 0.901801572 0.884825493 0.87870677 1.043580069 0.786456473 0.888720615 0.874891174 0.84408912 1 10.61947411 -9.706851208 1.611409267 0.999781209 0.855098649 0 0.090377999 0.408747354 1.919559704 0.061763346 0.01368542 1.96E-10 9.706851208 -0.14468256 AS(ph)PGGVSTSSSDGKAEK ddPTM_HeLa_CUDC101_4h_R1 1 ASPGGVSTSSSDGKAEK 17 1 P54259 P54259 ATN1 Atrophin-1 1 0 AS(0.969)PGGVS(0.015)T(0.005)S(0.005)S(0.005)SDGKAEK 79.467 0.0075095 12597000 1742.3 2095.9 1778.1 1868.9 2479.5 2010.1 1378 1520 2429.7 2185 TRUE FALSE FALSE 1538.070235 2160.472195 1874.229464 1945.12182 2296.592225 1971.760692 1431.149922 1693.030656 2329.546738 2172.003523 0.708134319 0.994690926 0.86290351 0.895542664 1.057361188 0.907807317 0.658907735 0.77947878 1.072533591 1 11.08481073 -9.706692946 1.605772238 0.999880246 0.83926784 0.239579018 0.118294629 0.548423113 2.554332656 0.091886406 0.020290822 1.96E-10 9.706692946 -0.160612406 ALAITSK(ac)APPAK ddPTM_HeLa_CUDC101_4h_R1 2 ALAITSKAPPAK 12 1 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog 0 1 ; ALAITSK(1)APPAK;ALAITSK(1)APPAK 139.86 0.00030263 3696200 4695.7 4874.9 4467.9 5089.6 4625.5 5009.7 4781.2 4414.9 3782.4 4353.6 FALSE TRUE FALSE 4145.277164 5025.089891 4709.448189 5297.175887 4284.28608 4914.148319 4965.612486 4917.47437 3626.487871 4327.704594 0.957846608 1.161144385 1.088209254 1.224015127 0.989967311 1.135509186 1.147400979 1.136277734 0.837970289 1 12.07938631 -7.264960932 24.9880544 0.980094229 1.124333608 0.578693356 0.072485022 148.101837 1050891.155 0.009136434 0.010666624 5.43E-08 7.264960932 0.144239379 (ac)DLDETLVHS(ph)SFK ddPTM_HeLa_CUDC101_4h_R1 1 DLDETLVHSSFK 12 0 H7C2S4 H7C2S4 CTDSPL 1 0 DLDET(0.014)LVHS(0.493)S(0.493)FK 60.49 0.038519 95521000 1177.3 1888.1 1746.9 1636.9 2207.6 2243.1 2276 1086.9 2388.7 2533.7 TRUE FALSE FALSE 1039.298679 1946.270123 1841.342698 1703.659857 2044.749746 2200.316605 2363.786082 1210.628303 2290.236775 2518.62944 0.412644537 0.772749692 0.731089167 0.676423387 0.811850173 0.873616646 0.938520786 0.48066948 0.909318671 1 11.29842316 -9.706248394 1.609798553 0.99951834 0.676635153 0.2458045 0.158719447 0.390422232 1.829642379 0.131560983 0.029153418 1.97E-10 9.706248394 -0.322883188 DY(ph)ES(ph)GQLY(ph)GLEK ddPTM_HeLa_CUDC101_4h_R1 1 DYESGQLYGLEK 12 0 A0A3B3ISF0;Q659C4-2;Q659C4;Q659C4-7;Q659C4-6;Q659C4-5 A0A3B3ISF0 LARP1B La-related protein 1B 3 0 DY(1)ES(1)GQLY(1)GLEK 77.74 0.0017409 0 433.9 607.44 560.54 585.85 638.14 794.08 575.55 411.61 703.39 773.31 TRUE FALSE FALSE 383.0388997 626.1545064 590.8444879 609.7434953 591.0656836 778.934247 597.7491563 458.4660186 674.3959665 768.7103177 0.498287705 0.814551974 0.768617871 0.793203215 0.76890562 1.013300107 0.777600017 0.596409347 0.877308332 1 9.586296222 -9.702843278 1.602626421 0.999575821 0.722643225 0.186768999 0.135515661 0.386389581 1.794354744 0.11125941 0.024696509 1.98E-10 9.702843278 -0.276932596 GSEGYLAATYPTVGQTS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 GSEGYLAATYPTVGQTSPR 19 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 GSEGYLAATYPT(0.006)VGQT(0.383)S(0.611)PR;GSEGYLAAT(0.004)Y(0.002)PT(0.396)VGQT(0.146)S(0.451)PR;GSEGYLAATYPTVGQT(0.008)S(0.992)PR ;; 284.84 3.52E-104 295437600 13670.7 10453.6 8635.5 8967 11732.8 11419.7 9451.7 9133.2 9602 8948.8 TRUE FALSE FALSE 12068.24127 10775.66303 9102.361251 9332.713019 10867.29472 11201.88825 9816.255235 10172.88657 9206.201496 8895.57214 1.356657119 1.211351317 1.023246297 1.049141401 1.221652138 1.259265629 1.103499031 1.143589913 1.034919548 1 13.11887168 -9.70090594 1.600924978 1.000370126 1.19756877 0.252139944 0.097378238 0.407297594 1.888301756 0.083373993 0.018553321 1.99E-10 9.70090594 0.197198643 ALAPTWEQLALGLEHSETVK ddPTM_HeLa_CUDC101_4h_R1 1 ALAPTWEQLALGLEHSETVK 20 0 Q8NBS9-2;Q8NBS9 Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 0 0 144.72 2.15E-05 9455800 2388.5 1906.5 1994.5 2077.1 2209 2286.2 2032.4 2014.5 2138.1 2866.2 FALSE FALSE TRUE 2108.523651 1965.237005 2102.328703 2161.813116 2046.046471 2242.594544 2110.790349 2243.822537 2049.966613 2849.151715 0.740053132 0.689762147 0.737878819 0.758756757 0.718124788 0.787109557 0.740848702 0.78754056 0.719500686 1 11.47631673 -9.103735246 0.771726073 1.008413615 0.743154897 0 0.090157167 0.153394284 0.158523592 0.024540502 0.006453479 7.88E-10 9.103735246 -0.265258718 VMLGETNPADS(ph)KPGTIR ddPTM_HeLa_CUDC101_4h_R1 2 VMLGETNPADSKPGTIR 17 1 Q32Q12;P22392-2;J3KPD9;P22392;E7ERL0;O60361;P15531;P15531-2 Q32Q12;P15531 NME1-NME2;NME2;NME1;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A 1 0 VMLGETNPADS(0.77)KPGT(0.23)IR;VMLGETNPADS(0.855)KPGT(0.145)IR ; 85.976 0.0050811 23551000 2331.38 2590.8 2369.31 2491.13 3106 2428.04 2075.22 2404.7 2419.52 2898.46 TRUE FALSE FALSE 2058.099171 2670.619477 2497.402065 2592.729049 2876.876568 2381.729182 2155.261931 2678.441328 2319.786362 2881.219831 0.714315218 0.926905836 0.866786365 0.899871999 0.998492561 0.826639174 0.748038004 0.929620607 0.805140356 1 11.49246402 -9.699170619 1.594145282 0.999772943 0.841336318 0 0.102023916 0.408242679 1.875145316 0.066975418 0.0148859 2.00E-10 9.699170619 -0.158436625 ALATPPK(ac)LHTCEK ddPTM_HeLa_CUDC101_4h_R1 2 ALATPPKLHTCEK 13 1 E5RGS7;B3KPU0;H0YBP7;A0A087WVI1;Q96JY6;Q96JY6-3;Q96JY6-5 E5RGS7;Q96JY6 PDLIM2 PDZ and LIM domain protein 2 0 1 ; ALATPPK(1)LHTCEK;ALATPPK(1)LHTCEK 184.96 3.03E-08 1549220000 11425.5 9934.8 11600.8 10833.2 11886.6 11267.4 11101 13305.5 9646.7 7111 FALSE TRUE FALSE 10086.22021 10240.87941 12227.97434 11275.02472 11009.7492 11052.49312 11529.16929 14820.14434 9249.058943 7068.703456 1.426884049 1.448763479 1.729875134 1.595062629 1.557534457 1.563581382 1.631016121 2.096585948 1.308451967 1 12.7872299 -9.454941496 0.102249892 1.73E-12 2.310009032 0.645510149 0.160222582 10.25458129 0.257949556 4.396818631 1.733862754 3.51E-10 9.454941496 2.310009032 HTGMASIDSSAPETTSDS(ph)SPTLSR ddPTM_HeLa_CUDC101_4h_R1 1 HTGMASIDSSAPETTSDSSPTLSR 24 0 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H0YCW2;S4R3B3;H7C453;S4R3U7 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 HTGMASIDSSAPETT(0.005)S(0.057)DS(0.344)S(0.344)PT(0.058)LS(0.191)R 184.95 3.94E-15 11711000 2098.8 1112.4 684.55 760.81 2322.4 2052.5 1434.7 1138.6 1632.6 1043.9 TRUE FALSE FALSE 1852.781846 1146.671725 721.5588437 791.8391203 2151.081179 2013.351982 1490.03686 1268.213622 1565.303537 1037.690836 1.785485407 1.105022503 0.695350502 0.76307807 2.072949961 1.940223342 1.435915985 1.222149774 1.508448839 1 10.01916096 -9.696221257 1.58614596 1.000519698 1.437908721 0 0.466776539 0.769017247 3.494856585 0.347061016 0.077153734 2.01E-10 9.696221257 0.437389023 ALDGAFTEENR ddPTM_HeLa_CUDC101_4h_R1 2 ALDGAFTEENR 11 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 ; ; 118.03 0.025951 14405600 3575.9 2894.4 2832.25 3130.9 3259.8 2666.4 2505.2 2977.6 2919.3 3005.7 FALSE FALSE TRUE 3156.738423 2983.573033 2985.370002 3258.591635 3019.331048 2615.542863 2601.826403 3316.557948 2798.965218 2987.821963 1.056534982 0.998577917 0.999179348 1.090624433 1.010545838 0.875401177 0.870810388 1.110025293 0.936791165 1 11.54487847 -5.497346417 23.17646039 1.027634044 0.943788951 0.108488058 0.072876835 311.7732762 283004.649 0.00910692 0.02026796 3.18E-06 5.497346417 -0.083845093 CSLHS(ph)ASPASVR ddPTM_HeLa_CUDC101_4h_R1 1 CSLHSASPASVR 12 0 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 CS(0.001)LHS(0.542)AS(0.347)PAS(0.11)VR 73.296 0.031554 16180000 4368.1 2456.5 2509.7 2325.4 4153.7 2909.6 2526.5 3011.7 3842.2 2210.7 TRUE FALSE FALSE 3856.07794 2532.181853 2645.381973 2420.239863 3847.289826 2854.104228 2623.947951 3354.539754 3683.82289 2197.550658 1.754716291 1.152274622 1.203786572 1.101335186 1.750717242 1.298766068 1.194032976 1.526490296 1.676331272 1 11.10168071 -9.69577528 1.586198598 1.000560135 1.420932034 0 0.308272037 0.416776395 1.894594696 0.18072146 0.040210337 2.01E-10 9.69577528 0.420371899 VQDTSNT(ph)GLGEDIIHQLSK ddPTM_HeLa_CUDC101_4h_R1 1 VQDTSNTGLGEDIIHQLSK 19 0 Q8IWA0 Q8IWA0 WDR75 WD repeat-containing protein 75 1 0 VQDT(0.023)S(0.347)NT(0.631)GLGEDIIHQLSK 133.29 6.06E-05 31438000 2597.8 1658.1 1584.2 1684.3 1921.8 2122.4 1818.5 1462.3 1427.8 1450.7 TRUE FALSE FALSE 2293.289822 1709.184096 1669.846644 1752.993034 1780.032643 2081.918756 1888.640154 1628.762321 1368.94548 1442.071172 1.590275062 1.185228669 1.157950229 1.215607848 1.234358385 1.44370042 1.309671943 1.129460427 0.949291204 1 10.49392665 -9.69462353 1.584972187 1.000494817 1.329625316 0.398967315 0.14090343 0.352397543 1.599812138 0.119516821 0.026627842 2.02E-10 9.69462353 0.329130498 SLCLS(ph)PSEASQMK ddPTM_HeLa_CUDC101_4h_R1 1 SLCLSPSEASQMK 13 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 SLCLS(0.769)PS(0.23)EAS(0.001)QMK 131.08 0.0010622 4819400 1538.2 917.5 1036.4 805.66 1080.3 1205.1 1002.9 1096.7 1033.3 820.22 TRUE FALSE FALSE 1357.894528 945.7670875 1092.430919 838.5182972 1000.608421 1182.114725 1041.582189 1221.543895 990.7069366 815.341295 1.665430828 1.159964659 1.339844953 1.028426136 1.227226472 1.449840371 1.27747999 1.498199469 1.215082497 1 9.671260275 -9.69381708 1.583450846 1.000575044 1.371924738 0.12789768 0.184735356 0.376941684 1.707945673 0.144118379 0.032124729 2.02E-10 9.69381708 0.371349694 ALDK(ac)LDGTEINGR ddPTM_HeLa_CUDC101_4h_R1 1 ALDKLDGTEINGR 13 1 Q13247-3;Q13247;A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80 Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 0 1 ALDK(1)LDGTEINGR 129.74 0.0016142 1315600 923.48 614.68 534.62 545.51 1265.4 1029.2 1039 1064.9 1138.5 700.61 FALSE TRUE FALSE 815.2310743 633.6175622 563.5231743 567.7582557 1172.053963 1009.569725 1079.074578 1186.123912 1091.570548 696.4427406 1.170564394 0.909791323 0.809145019 0.815226037 1.682915041 1.449609086 1.549408896 1.703117633 1.567351463 1 9.443860933 -5.754225359 24.99961166 1.028991299 1.582440792 0.610950366 0.215022186 62.12616621 215291.3122 0.022500145 0.044265074 1.76E-06 5.754225359 0.553449493 ALDLDSSCK ddPTM_HeLa_CUDC101_4h_R1 1 ALDLDSSCK 9 0 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 0 125.82 0.023798 4522300 1122.3 747.27 823.17 867.05 996.67 1128.1 878.64 845.25 794.32 491.54 FALSE FALSE TRUE 990.7456953 770.292503 867.6730602 902.4120467 923.1476397 1106.583372 912.5294391 941.4698434 761.5777934 488.6162982 2.02765585 1.576477301 1.775775927 1.846872587 1.889309962 2.264728737 1.867578798 1.926808104 1.558641814 1 8.932558177 -9.59769362 0.563013064 0.722906935 1.925739672 0.442517414 0.240825941 0.577264269 0.209600316 0.389954177 0.040346628 2.53E-10 9.59769362 1.202832737 ALDQASEEIWNDFR ddPTM_HeLa_CUDC101_4h_R1 2 ALDQASEEIWNDFR 14 0 G3V1U3;F8VQZ7;P50579-3;P50579;F8VY03;F8VZX9;F8VRR3;P50579-2 G3V1U3 METAP2 Methionine aminopeptidase 2 0 0 ; ; 260.5 2.69E-69 14379400 2270.6 2274.28 1863.83 1858.96 2120.76 2248.93 1976.36 1869.91 2253.63 2161.52 FALSE FALSE TRUE 2004.44371 2344.347871 1964.594288 1934.776424 1964.31576 2206.035407 2052.588867 2082.772996 2160.734418 2148.663183 0.932879441 1.091072761 0.914333295 0.900455892 0.914203667 1.026701358 0.95528647 0.969334334 1.005618021 1 11.06922363 ENFT(ph)AGSDCVTLK ddPTM_HeLa_CUDC101_4h_R1 1 ENFTAGSDCVTLK 13 0 Q1W6H9 Q1W6H9 FAM110C Protein FAM110C 1 0 ENFT(0.559)AGS(0.175)DCVT(0.265)LK 150.59 0.0015501 11082000 2029 1408.7 1781.8 1413.4 1787.8 1609.1 1912.8 1947 1189.7 549.66 TRUE FALSE FALSE 1791.163696 1452.100377 1878.129498 1471.044561 1655.917556 1578.409098 1986.577337 2168.63861 1140.660062 546.3905979 3.278174447 2.657623288 3.437338609 2.692294792 3.030647969 2.888792568 3.635819036 3.969026221 2.087627545 1 9.093788848 -9.693511039 0.43701669 3.15E-12 3.295988436 0.598075225 0.510915565 0.849402068 0.16599599 1.322003195 0.114711757 2.03E-10 9.693511039 3.295988436 QRPVPQPSSAS(ph)LDEYTLMR ddPTM_HeLa_CUDC101_4h_R1 3 QRPVPQPSSASLDEYTLMR 19 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 QRPVPQPSS(0.002)AS(0.997)LDEYT(0.001)LMR;QRPVPQPSS(0.007)AS(0.988)LDEYT(0.005)LMR;QRPVPQPSS(0.002)AS(0.976)LDEYT(0.021)LMR ;; 151.2 2.10E-05 107733000 3056.4 2524.64 1943.1 2402.18 2863.08 2246.06 2441.2 2288.18 2454.3 2267.19 TRUE FALSE FALSE 2698.133425 2602.421166 2048.149864 2500.151284 2651.876292 2203.220148 2535.357902 2548.657162 2353.132715 2253.704653 1.197199208 1.154730351 0.90879249 1.109351787 1.176674277 0.977599325 1.124973451 1.130874517 1.04411761 1 11.13808275 -9.693115117 1.5874439 1.000257136 1.110224202 0.088933758 0.086203841 0.56079763 2.557030206 0.063510988 0.014213035 2.03E-10 9.693115117 0.109967066 SNT(ph)LDIMDGR ddPTM_HeLa_CUDC101_4h_R1 3 SNTLDIMDGR 10 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 SNT(1)LDIMDGR;S(0.081)NT(0.919)LDIMDGR;S(0.045)NT(0.955)LDIMDGR ;; 154.1 0.0010299 87786000 12647 8539.3 8109.4 8478.2 11462.2 10798 10058.4 8853.7 9029.7 8643.9 TRUE FALSE FALSE 11164.53783 8802.385711 8547.818694 8823.977642 10616.65634 10592.04614 10446.35586 9861.56942 8657.491944 8592.485698 1.299337377 1.024428323 0.99480162 1.026941208 1.235574514 1.23271036 1.215754815 1.147696926 1.007565476 1 13.06885983 -9.691537698 1.57504768 1.000172082 1.167858366 0.228620872 0.099616709 0.481226746 2.155241128 0.082820038 0.018435849 2.03E-10 9.691537698 0.167686284 KFELLPTPPLS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 2 KFELLPTPPLSPSR 14 1 H0YBG3;A0A0B4J1R1;H0YBT0;A0A087WUS5;P01106;P01106-2;P04198 H0YBG3 MYC;MYCN Myc proto-oncogene protein;N-myc proto-oncogene protein 1 0 KFELLPTPPLS(0.611)PS(0.388)R;KFELLPT(0.005)PPLS(0.879)PS(0.116)R ; 97.384 0.0048663 33383000 15507.8 10549 6631 6480.7 6427.1 5613.4 5588.9 3755.9 10694.9 13542.8 TRUE FALSE FALSE 13689.99919 10874.00219 6989.491918 6745.010958 5952.985638 5506.333748 5804.465745 4183.456474 10254.0517 13462.24682 1.016917857 0.807740515 0.519192079 0.501031592 0.442198521 0.409020412 0.431166195 0.3107547 0.761689474 1 13.71663159 -6.829092017 1.67421422 1.011419122 0.415533985 0.861811844 0.090217858 0.035713589 0.202912798 0.007632049 0.010785716 1.48E-07 6.829092017 -0.595885137 down IRSS(ph)VGPVR ddPTM_HeLa_CUDC101_4h_R1 1 IRSSVGPVR 9 1 Q9NTI2 Q9NTI2 ATP8A2 Phospholipid-transporting ATPase IB 1 0 IRS(0.047)S(0.953)VGPVR 67.879 0.040068 9493200 2096 2152.2 1946.9 2106.2 2371.6 2303.8 1880.6 1849.5 2300.6 2353.7 TRUE FALSE FALSE 1850.310057 2218.506731 2052.155303 2192.09994 2196.651793 2259.858853 1953.135372 2060.039604 2205.768294 2339.700088 0.790832153 0.948201328 0.877101862 0.936914928 0.938860414 0.965875441 0.834780228 0.880471653 0.942756854 1 11.1921079 -9.690838122 1.578309765 0.999799949 0.882688054 0.17035819 0.055479471 0.367703573 1.655436868 0.044202812 0.009873891 2.04E-10 9.690838122 -0.117111895 ALEATTEHIR ddPTM_HeLa_CUDC101_4h_R1 1 ALEATTEHIR 10 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 197.79 7.52E-17 5647500 3932.1 3090.5 2809.4 2655.2 3085.3 3545.5 2610.8 2625.8 2821.4 2750.5 FALSE FALSE TRUE 3471.185199 3185.714642 2961.284662 2763.490533 2857.703566 3477.875495 2711.499431 2924.710458 2705.100698 2734.139904 1.269571171 1.165161533 1.083077226 1.010734867 1.045192882 1.272018118 0.991719344 1.069700367 0.989379034 1 11.41687135 -6.675057849 8.48761184 1.133659114 1.078694589 0 0.104362561 0.771107722 67.78401151 0.019275107 0.027262291 2.11E-07 6.675057849 -0.054964525 ALEEALEAKEEFER ddPTM_HeLa_CUDC101_4h_R1 2 ALEEALEAKEEFER 14 1 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 0 ; ; 100.73 0.0091122 5553600 1577.27 1478.69 1513.49 1418.86 1854.78 1756.2 1553.96 2279.8 1735.7 1575.2 FALSE FALSE TRUE 1392.384802 1524.246686 1595.313847 1476.727244 1717.956575 1722.703411 1613.896758 2539.323217 1664.153711 1565.83064 0.88923078 0.973442879 1.018829116 0.943095125 1.097153505 1.100185018 1.030696881 1.621710006 1.062792915 1 10.61271246 -1.424741921 0.967954245 0.962265494 200 0.850210204 0.07475885 130.111906 0.503429871 0.011165501 56974.44637 0.037606081 1.424741921 199.0377345 ALEEAMEQK ddPTM_HeLa_CUDC101_4h_R1 2 ALEEAMEQK 9 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 133.55 0.013298 81780000 2838.9 2177.43 2288.45 2229.57 2882.3 2733.91 2528.3 2731.1 2850.7 2576.87 FALSE FALSE TRUE 2506.128445 2244.514037 2412.170529 2320.501502 2669.678471 2681.765222 2625.817378 3041.997385 2733.192939 2561.542663 0.978366858 0.876235274 0.94168665 0.905900001 1.042215111 1.046933655 1.02509219 1.187564599 1.067010509 1 11.3227972 -2.814921072 0.785567623 0.974176523 2.958955168 0.564964215 0.055897421 10.36529886 0.763815972 0.008282203 29.92611252 0.001531366 2.814921072 1.984778646 ALEEELEDLELGL ddPTM_HeLa_CUDC101_4h_R1 2 ALEEELEDLELGL 13 0 Q9BRP8-2;Q9BRP8 Q9BRP8-2 WIBG Partner of Y14 and mago 0 0 ; ; 205.36 5.05E-17 27943000 662.07 619.65 488.69 587.75 747.92 643.64 559.41 576.81 703.46 766.61 FALSE FALSE TRUE 584.4631582 638.740682 515.1100596 611.7209855 692.7474317 631.3636394 580.9866311 642.4717189 674.4630811 762.0501696 0.766961522 0.838187179 0.675952949 0.802730594 0.909057513 0.828506658 0.762399451 0.843083231 0.885063882 1 9.573742171 -9.290972293 0.916090084 1.005356176 0.801280252 0.361861053 0.06751279 0.328728127 0.473997914 0.046236839 0.011220196 5.12E-10 9.290972293 -0.204075923 K(ac)GSK(ac)K(ac)AVTK ddPTM_HeLa_CUDC101_4h_R1 1 KGSKKAVTK 9 3 O60814;P57053;P58876;P62807;Q16778;Q5QNW6;Q5QNW6-2;Q8N257;Q93079;U3KQK0;Q99877;Q99880;Q6DRA6;Q6DN03 O60814;P58876;P62807;Q16778;Q5QNW6;Q8N257;Q93079;U3KQK0;Q99880;Q6DRA6 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST2H2BF;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BL;HIST2H2BD;HIST2H2BC Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 2-F;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Putative histone H2B type 2-D;Putative histone H2B type 2-C 0 3 K(1)GSK(1)K(1)AVTK 131.42 0.033485 4705600000 688.88 1487.2 2591.4 4002.7 3173.6 4807.4 3433.9 2584.4 279 246.36 FALSE TRUE FALSE 608.1305307 1533.018869 2731.498923 4165.947407 2939.489851 4715.706855 3566.346673 2878.597649 267.4995019 244.8946398 2.483233325 6.259911898 11.15377178 17.01118249 12.00307958 19.25606399 14.56277964 11.75443306 1.092304438 1 7.936017386 -6.828745247 1.595270115 1.598482654 15.06533187 0.885308336 2.125049812 0.075221894 0.387055671 0.354695281 0.503160781 1.48E-07 6.828745247 13.46684922 up NVRS(ph)DIS(ph)DQEEDEESEGCPVSINLSK ddPTM_HeLa_CUDC101_4h_R1 1 NVRSDISDQEEDEESEGCPVSINLSK 26 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154;Q15154-4;Q15154-2;H0YBA1 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 2 0 NVRS(0.782)DIS(0.9)DQEEDEES(0.317)EGCPVS(0.001)INLSK 64.035 0.0028351 18517000 1759.9 1193.5 1133.7 1165.2 1423.2 1292.6 1132.8 1186.5 1487.7 1025.9 TRUE FALSE FALSE 1553.60719 1230.27032 1194.991251 1212.721892 1318.213371 1267.945809 1176.492475 1321.566364 1426.376376 1019.797901 1.523446153 1.206386402 1.171792225 1.189178651 1.292622166 1.243330475 1.153652576 1.295910065 1.398685342 1 9.994067559 -9.688664435 1.575223911 1.000565773 1.294278287 0 0.160243205 0.317191556 1.422761163 0.095432117 0.02135939 2.05E-10 9.688664435 0.293712514 KATQVGEK(ac)TPK ddPTM_HeLa_CUDC101_4h_R1 1 KATQVGEKTPK 11 2 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 0 1 KATQVGEK(1)TPK 83.53 0.016488 0 905.57 1097.1 1339 1330.9 1747.7 1593.2 1776.3 1381.3 758.47 674.43 FALSE TRUE FALSE 799.4204574 1130.900351 1411.39039 1385.179855 1618.775653 1562.812364 1844.812486 1538.541609 727.2055456 670.4184604 1.192420115 1.686857414 2.105237958 2.066142173 2.414574998 2.331099838 2.751732828 2.29489744 1.08470394 1 9.388918065 -6.816217547 0.845291796 1.038514062 2.483723979 0.940375854 0.142841175 0.07715415 0.110419001 0.029008904 0.045205255 1.53E-07 6.816217547 1.445209917 up ALEHAFQLEHIMDLTR ddPTM_HeLa_CUDC101_4h_R1 1 ALEHAFQLEHIMDLTR 16 0 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 62.357 0.021787 8515800 1804.6 1623.5 1462.9 1643 1457.7 1804.6 1643.5 1438 1425.6 1678.1 FALSE FALSE TRUE 1593.067524 1673.518111 1541.988799 1710.008642 1350.168375 1770.180262 1706.890346 1601.696107 1366.836165 1668.118587 0.955008557 1.003236895 0.924387997 1.025112157 0.809395918 1.061183705 1.023242807 0.960181201 0.819387887 1 10.70400614 -9.516930211 1.23262393 1.000225572 0.969213073 0 0.086944281 1.6915268 4.546330524 0.044768625 0.010444104 3.04E-10 9.516930211 -0.031012499 ALEHFTDLYDIK ddPTM_HeLa_CUDC101_4h_R1 1 ALEHFTDLYDIK 12 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 116.74 0.0037549 7186100 4480.7 2014.7 2027.1 2062.7 4399.5 3923 2966.2 2605.1 3554.9 4090.4 FALSE FALSE TRUE 3955.479138 2076.770519 2136.691158 2146.825822 4074.95765 3848.175311 3080.607328 2901.654054 3408.365517 4066.070119 0.972801507 0.510756199 0.525492944 0.52798544 1.002185779 0.946411449 0.757637531 0.713626172 0.838245632 1 11.98941938 -7.383422161 8.98461696 0.987969785 0.71983114 0.264420981 0.165353654 0.27481852 19.10587068 0.029576466 0.033769818 4.14E-08 7.383422161 -0.268138645 YRSDS(ph)QDEVEK ddPTM_HeLa_CUDC101_4h_R1 4 YRSDSQDEVEK 11 1 H0YBZ4;Q15390-2;Q15390;H7C5V5;H0YF01 H0YBZ4 MTFR1 Mitochondrial fission regulator 1 1 0 Y(0.108)RS(0.068)DS(0.824)QDEVEK;YRSDS(1)QDEVEK;Y(0.133)RS(0.186)DS(0.681)QDEVEK;YRS(0.001)DS(0.999)QDEVEK ;;; 134.02 0.00016735 90021000 13384.1 12961.2 13054.8 13312 14541.4 13214.2 12569 11465.5 13533 14523.5 TRUE FALSE FALSE 11815.23609 13360.51921 13760.58198 13854.9209 13468.70989 12962.16115 13053.79054 12770.68617 12975.16401 14437.11358 0.818393235 0.925428697 0.953139414 0.959673887 0.932922625 0.897836059 0.904182853 0.884573368 0.898736714 1 13.81749471 -9.688526559 1.574344163 0.999812684 0.897874258 0 0.049708087 0.342867121 1.535982963 0.035793198 0.008008489 2.05E-10 9.688526559 -0.101938426 S(ph)SLGSHQLPR ddPTM_HeLa_CUDC101_4h_R1 2 SSLGSHQLPR 10 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 S(0.771)S(0.228)LGS(0.001)HQLPR;S(0.5)S(0.5)LGSHQLPR ; 96.067 0.013161 21040000 3662.2 2644.07 3088.2 2746.35 4223.6 3499.9 2939.62 2111.68 3364.2 3040.3 TRUE FALSE FALSE 3232.922468 2725.530663 3255.157433 2858.358024 3912.033443 3433.145239 3053.002128 2352.065115 3225.526252 3022.21616 1.069719139 0.901831808 1.077076311 0.945782125 1.294425427 1.135969453 1.010186554 0.778258401 1.067271856 1 11.56139114 -9.688495993 1.544292855 0.999895695 1.039393211 0 0.133313602 2.353860398 10.0717774 0.094649119 0.020751403 2.05E-10 9.688495993 0.039497516 LDT(ph)PDINIVLK ddPTM_HeLa_CUDC101_4h_R1 2 LDTPDINIVLK 11 0 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 LDT(1)PDINIVLK;LDT(1)PDINIVLK ; 159.66 0.00063928 76182000 6385.4 5697.3 4924.6 4807.1 5392.3 5634 4990 5350.1 5850.4 5207 TRUE FALSE FALSE 5636.913092 5872.82706 5190.838772 5003.154316 4994.520772 5526.540837 5182.465972 5959.133758 5609.244036 5176.028532 1.089042121 1.134620303 1.002861313 0.966600992 0.964933006 1.067718387 1.001243702 1.151294611 1.083696506 1 12.33762985 -9.687062025 1.586585807 1.000204437 1.05004008 0 0.066828848 0.881506222 4.024701791 0.045047293 0.010188703 2.06E-10 9.687062025 0.049835642 ALENDPDCR ddPTM_HeLa_CUDC101_4h_R1 1 ALENDPDCR 9 0 P13797;P13797-3;A0A0A0MSQ0;P13797-2;U3KQI3;Q5TBN3;P13796 P13797 PLS3;LCP1 Plastin-3;Plastin-2 0 0 128.12 0.020724 17613000 6511 5549.5 4566.2 4846.8 4743.2 5104.6 4503.7 5060.4 4876.9 3886.9 FALSE FALSE TRUE 5747.79045 5720.473517 4813.062584 5044.473454 4393.303586 5007.23826 4677.409218 5636.455481 4675.872118 3863.780546 1.487607896 1.480537895 1.245687359 1.305579702 1.137047908 1.295942717 1.210578386 1.458792862 1.210180563 1 11.91579744 -9.496459958 1.263028501 1.001326034 1.336631458 0.278695272 0.127619787 0.298616908 0.857810168 0.085201543 0.021048322 3.19E-10 9.496459958 0.335305423 T(ph)YGGDTGSPEISFTK ddPTM_HeLa_CUDC101_4h_R1 1 TYGGDTGSPEISFTK 15 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 T(0.931)YGGDT(0.056)GS(0.001)PEIS(0.012)FTK 219.84 1.02E-31 33777000 3578.1 2517.3 2193 2203.5 2909.3 2944.7 2870.4 2645.7 2329 2315 TRUE FALSE FALSE 3158.680542 2594.855029 2311.560213 2293.368254 2694.686735 2888.534754 2981.11229 2946.875794 2232.997634 2301.230277 1.372605155 1.127594685 1.004488876 0.996583557 1.170976569 1.255213258 1.295442842 1.280565367 0.970349494 1 11.16818964 -9.685972508 1.567411572 1.000337388 1.210224113 0.303924328 0.117747836 0.465831191 2.067394715 0.099820115 0.022335954 2.06E-10 9.685972508 0.209886725 T(ph)FS(ph)Y(ph)Y(ph)ADK ddPTM_HeLa_CUDC101_4h_R1 1 TFSYYADK 8 0 Q86SQ0-2;Q86SQ0-3;Q86SQ0;E9PGF6;A0A1W2PRT1 Q86SQ0-2 PHLDB2 Pleckstrin homology-like domain family B member 2 4 0 T(1)FS(1)Y(1)Y(1)ADK 64.841 0.036446 6649300 4212 3499.1 3078.5 3271.2 3716.4 3853.8 3140.8 3535.1 3761.5 3378.1 TRUE FALSE FALSE 3718.275745 3606.903124 3244.933022 3404.613675 3442.248576 3780.295186 3261.941708 3937.521495 3606.449378 3358.006911 1.107286508 1.07412022 0.966327083 1.013879294 1.025086805 1.12575563 0.971392196 1.172576948 1.073985097 1 11.71338948 -9.684371185 1.571017264 1.000159265 1.060580264 0 0.066703622 0.701975917 3.134644437 0.043285399 0.009737733 2.07E-10 9.684371185 0.060420999 ALESPERPFLAILGGAK ddPTM_HeLa_CUDC101_4h_R1 2 ALESPERPFLAILGGAK 17 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 ; ; 134.37 0.00029429 39223000 4155.6 4695.1 3814.9 4662.9 5507.9 5363.6 5625.8 4467.2 5157.6 5144.6 FALSE FALSE TRUE 3668.486867 4839.750466 4021.145033 4853.073217 5101.59319 5261.298266 5842.788991 4975.727991 4945.001545 5113.99969 0.71734202 0.946372851 0.786301384 0.948978004 0.997574012 1.028803008 1.142508671 0.972962122 0.966953822 1 12.32023636 -5.786374579 1.961302369 0.864892271 1.054352231 0.381225394 0.089613706 0.27929961 2.187129173 0.017428572 0.038315565 1.64E-06 5.786374579 0.18945996 AVVVS(ph)PKEENK ddPTM_HeLa_CUDC101_4h_R1 2 AVVVSPKEENK 11 1 G3V5E1;O75909-1;O75909 G3V5E1 CCNK Cyclin-K 1 0 AVVVS(1)PKEENK;AVVVS(1)PKEENK ; 146.36 0.0049018 105176000 4434.8 4995 4798.7 4568.7 4819.4 4715.4 4871.8 4433.8 4570.3 5594 TRUE FALSE FALSE 3914.959467 5148.890029 5058.132237 4755.031334 4463.882464 4625.461601 5059.706958 4938.52587 4381.9103 5560.726639 0.704037389 0.925938346 0.909617136 0.855109708 0.802751646 0.831808845 0.909900322 0.88810801 0.788010378 1 12.4410577 -9.682869854 1.562383203 0.999695909 0.832437902 0 0.091293039 0.330898028 1.459365344 0.05633146 0.012634446 2.08E-10 9.682869854 -0.167258008 NWGAVVRS(ph)PEGTPQK ddPTM_HeLa_CUDC101_4h_R1 1 NWGAVVRSPEGTPQK 15 1 C9J0I9;Q86WB0;Q86WB0-3;F8WAU5;F8WBD7;F8WDK5;F8WF13 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 NWGAVVRS(0.979)PEGT(0.021)PQK 97.45 0.034707 7886000 970.91 1179.8 1012.7 1009.6 1214.4 1218.1 937.65 1017.8 846.45 1301.2 TRUE FALSE FALSE 857.1014016 1216.14824 1067.449625 1050.775852 1124.816131 1194.866772 973.8154746 1133.662238 811.5589727 1293.460405 0.662642164 0.940228425 0.825266565 0.812375739 0.869617754 0.923775299 0.752876138 0.876456855 0.627432405 1 10.33702018 -9.682634682 1.560667919 0.999689325 0.808906105 0 0.139874297 0.335971074 1.478030389 0.065207706 0.01461474 2.08E-10 9.682634682 -0.19078322 ALFAGDIEEMEER ddPTM_HeLa_CUDC101_4h_R1 2 ALFAGDIEEMEER 13 0 E7ES68;G5E9D5;Q9BQ52;Q9BQ52-3;Q9BQ52-4 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 0 0 ; ; 144.17 0.0033411 20249300 3994.2 3348.3 3239.1 2762.2 3051.6 3373.8 2991.4 2804.1 3147.3 4160 FALSE FALSE TRUE 3526.005931 3451.457154 3414.215544 2874.854455 2826.489548 3309.450386 3106.7793 3123.307409 3017.566962 4135.256135 0.852669294 0.834641686 0.825635809 0.695205898 0.683510152 0.800301185 0.751290657 0.755287534 0.729717063 1 12.01376098 -7.946676219 0.425625118 1.007943729 0.731379806 0 0.090851454 0.291762396 0.133995688 0.032350352 0.01986743 1.13E-08 7.946676219 -0.276563923 ALFAGDIEEMEERR ddPTM_HeLa_CUDC101_4h_R1 2 ALFAGDIEEMEERR 14 1 E7ES68;G5E9D5;Q9BQ52;Q9BQ52-3;Q9BQ52-4 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 0 0 ; ; 162.31 3.76E-05 4741400 2389.9 2252.8 2425 2219.4 2732.6 2360.1 2374.6 2835.8 2706.1 2075.4 FALSE FALSE TRUE 2109.759545 2322.206098 2556.102835 2309.916725 2531.021542 2315.085025 2466.189117 3158.616009 2594.553413 2063.055428 1.022638324 1.125614981 1.238988929 1.119658102 1.226831576 1.122163269 1.195406136 1.53103788 1.257626614 1 11.01056687 -1 0.242860606 0.989950225 3.551419431 0.336948071 0.115762628 19.49247299 0.241292224 0.04914811 20.43373352 0.1 1 2.561469206 ALGALVDSCAPGLCPDWDSWDASKPVTNAR ddPTM_HeLa_CUDC101_4h_R1 1 ALGALVDSCAPGLCPDWDSWDASKPVTNAR 30 1 P21333-2;P21333;Q60FE5;A0A087WWY3;F8WE98 P21333-2 FLNA Filamin-A 0 0 102.73 2.85E-09 11232000 1086.3 930.42 593.09 781.7 1005.7 902.26 726.72 929.52 802.68 320.64 FALSE FALSE TRUE 958.9655607 959.0851374 625.1542394 813.5811048 931.5115146 885.0508938 754.7498338 1035.3328 769.5931907 318.732819 3.008681577 3.00905674 1.961373922 2.552548894 2.922546594 2.776779926 2.367970252 3.248277986 2.414540156 1 8.316203767 -9.303875607 0.879933497 0.928129631 2.723048814 0.213170064 0.553507331 0.243502279 0.316419178 0.297629307 0.068163344 4.97E-10 9.303875607 1.794919183 ALGDEDDLAKREDEFVDLGDV ddPTM_HeLa_CUDC101_4h_R1 1 ALGDEDDLAKREDEFVDLGDV 21 2 Q9C0I1-3;Q9C0I1-2;Q9C0I1 Q9C0I1-3 MTMR12 Myotubularin-related protein 12 0 0 83.964 0.0076886 9440500 2946 2377.2 2764.8 2567.8 3065.5 2812.3 2827 2366.6 2950.3 2726.7 FALSE FALSE TRUE 2600.674346 2450.438714 2914.273451 2672.525983 2839.364172 2758.660063 2936.038337 2636.004178 2828.687385 2710.481467 0.959487965 0.90406031 1.075186636 0.985996774 1.047549746 1.017774922 1.083216533 0.972522487 1.043610672 1 11.40433343 -6.743884496 24.99991457 0.974574095 1.030967227 0.244862262 0.046026972 220.6844376 314276.1076 0.006226263 0.008793853 1.80E-07 6.743884496 0.056393133 QKS(ph)DAEEDGGTVSQEEEDRKPK ddPTM_HeLa_CUDC101_4h_R1 3 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 QKS(0.999)DAEEDGGT(0.001)VSQEEEDRKPK;QKS(1)DAEEDGGTVSQEEEDRKPK;QKS(1)DAEEDGGTVSQEEEDRKPK ;; 67.418 0.0031737 209054000 9522.9 8839.3 9311.3 9793.3 7274.8 7600.5 7441.8 9980.4 8118.2 11128.5 TRUE FALSE FALSE 8406.640098 9111.628356 9814.697043 10192.7131 6738.152497 7455.533126 7728.832719 11116.52839 7783.56436 11062.30719 0.759935514 0.823664377 0.887219716 0.921391255 0.609109147 0.673958244 0.698663723 1.004901437 0.703611302 1 13.43336469 -9.680725589 0.530522523 1.078512793 0.782739232 0 0.147704771 1.943212853 0.582883732 0.313494157 0.02807187 2.09E-10 9.680725589 -0.295773561 VQDT(ph)SNTGLGEDIIHQLSK ddPTM_HeLa_CUDC101_4h_R1 1 VQDTSNTGLGEDIIHQLSK 19 0 Q8IWA0 Q8IWA0 WDR75 WD repeat-containing protein 75 1 0 VQDT(0.478)S(0.478)NT(0.045)GLGEDIIHQLSK 196.02 1.02E-16 92097000 5377 3733.8 3107.4 3563.5 4321 3930.2 3712.2 3457.6 3604.9 3051.9 TRUE FALSE FALSE 4746.716211 3848.833952 3275.395443 3708.834933 4002.248439 3855.237983 3855.380798 3851.199208 3456.304496 3033.747163 1.564638039 1.268673276 1.079653401 1.222526049 1.319242581 1.270784207 1.270831282 1.269452924 1.139285613 1 11.56688514 -9.67907557 1.556987643 1.000695288 1.321013067 0.266217538 0.123843051 0.326481145 1.430467579 0.106057827 0.023867032 2.09E-10 9.67907557 0.32031778 SEPVINNDNPLESNDEKEGQEATCS(ph)RPQIVPEPMDFR ddPTM_HeLa_CUDC101_4h_R1 1 SEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFR 37 2 P23497;P23497-2;P23497-3;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;H7C4B4 P23497 SP100 Nuclear autoantigen Sp-100 1 0 SEPVINNDNPLES(0.111)NDEKEGQEAT(0.122)CS(0.766)RPQIVPEPMDFR 51.789 0.0035365 38693000 764.82 644.2 558.06 515.44 689.8 707.7 552.08 579.32 496.84 580.65 TRUE FALSE FALSE 675.168959 664.0470384 588.2304116 536.4618711 638.9148283 694.2018016 573.3739105 645.2674471 476.3600449 577.196268 1.169738954 1.150470083 1.019116797 0.929427131 1.106928204 1.2027136 0.993377716 1.117934198 0.825299939 1 9.172918161 -9.67892517 1.562357512 1.000290154 1.096433802 0.238947293 0.098418701 0.621390715 2.745108081 0.060644794 0.013700461 2.09E-10 9.67892517 0.096143648 ILEPDDFLDDLDDEDY(ph)EEDTPKRR ddPTM_HeLa_CUDC101_4h_R1 1 ILEPDDFLDDLDDEDYEEDTPKRR 24 2 J3KMZ8;Q92785 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 ILEPDDFLDDLDDEDY(0.757)EEDT(0.243)PKRR 98.443 1.27E-05 6916900 715.13 764.37 717.39 593.96 932.46 701.87 863.95 373.44 664.86 808.44 TRUE FALSE FALSE 631.3035455 787.9193337 756.1742734 618.1842561 863.6742835 688.4829991 897.2728409 415.9509001 637.4541894 803.6313629 0.785563599 0.980448711 0.940946693 0.76923859 1.074714506 0.856714945 1.116522926 0.517589182 0.793217162 1 9.650390058 -9.678015754 1.548993159 0.999841337 0.877822953 0 0.173546768 0.850012423 3.680744196 0.104946616 0.023535421 2.10E-10 9.678015754 -0.122018383 LWAPDS(ph)PNR ddPTM_HeLa_CUDC101_4h_R1 1 LWAPDSPNR 9 0 Q9Y263;E5RIM3 Q9Y263 PLAA Phospholipase A-2-activating protein 1 0 LWAPDS(1)PNR 96.756 0.020784 13868000 2908.3 2195.5 1970.3 2198.5 2149.7 2461.1 2562.8 1973.5 2161 2060.8 TRUE FALSE FALSE 2567.393483 2263.140753 2076.820378 2288.164333 1991.120914 2414.158618 2661.648054 2198.155263 2071.922665 2048.54227 1.253278256 1.104756678 1.013804015 1.116971988 0.97196965 1.17847635 1.299288813 1.073033881 1.011413187 1 11.00038195 -9.675413908 1.54773174 1.000273572 1.14466754 0.184364482 0.095587586 0.505671384 2.187915214 0.073734385 0.016600507 2.11E-10 9.675413908 0.144393967 ALIAAQYSGAQVR ddPTM_HeLa_CUDC101_4h_R1 2 ALIAAQYSGAQVR 13 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 ; ; 146.16 0.0078066 3459000 2685.5 2002.93 1942.59 1805.83 2364.86 2310.31 2060.06 1942.65 1552.06 733.74 FALSE FALSE TRUE 2370.709761 2064.637899 2047.612291 1879.479553 2190.408989 2266.244686 2139.517204 2163.793424 1488.08343 729.3756818 3.250327396 2.830691989 2.807349275 2.576833311 3.003128626 3.107102063 2.933354179 2.966637739 2.040215306 1 9.510518289 -9.310115928 0.843445371 0.892232732 2.946681467 0.685188784 0.356259936 0.134235537 0.156704567 0.184673972 0.040210605 4.90E-10 9.310115928 2.054448735 ALINADELASDVAGAEALLDR ddPTM_HeLa_CUDC101_4h_R1 2 ALINADELASDVAGAEALLDR 21 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 171.52 1.24E-08 160550000 2861.6 2173.2 1666.23 1865.69 1579.62 2075.42 1468.45 1646 2024.92 2122.06 FALSE FALSE TRUE 2526.167586 2240.153716 1756.311434 1941.780902 1463.09458 2035.834821 1525.088608 1833.373987 1941.451941 2109.437893 1.197554853 1.061967135 0.832596892 0.920520537 0.693594528 0.965107732 0.722983414 0.869129161 0.92036459 1 11.0426429 -6.78888986 4.800019892 1.094880039 0.831371471 0.474341994 0.104035691 0.095459635 5.328808904 0.015973639 0.021643382 1.63E-07 6.78888986 -0.263508568 ES(ph)Y(ph)RDRRDK ddPTM_HeLa_CUDC101_4h_R1 1 ESYRDRRDK 9 3 H0YL34;A0A075B7B1;O15061-2;O15061 H0YL34 SYNM Synemin 2 0 ES(1)Y(1)RDRRDK 80.688 0.023461 16045000 5168.1 4145.2 3974.7 3497.4 3731.1 4085.7 4023.5 3887.8 4551.5 3591.3 TRUE FALSE FALSE 4562.303152 4272.908699 4189.584305 3640.039089 3455.864186 4007.77208 4178.687743 4330.371437 4363.885244 3569.938788 1.277977978 1.196913716 1.173573149 1.019636275 0.968045782 1.122644482 1.170520838 1.213009997 1.222397778 1 11.80168362 -9.67504418 1.554201476 1.000472707 1.158659165 0 0.110513954 0.460198579 2.011292423 0.073587634 0.016651218 2.11E-10 9.67504418 0.158186458 ASPTGTPSRAS(ph)PTGTPSR ddPTM_HeLa_CUDC101_4h_R1 2 ASPTGTPSRASPTGTPSR 18 1 Q9UF83 Q9UF83 Uncharacterized protein DKFZp434B061 1 0 ASPT(0.001)GT(0.001)PS(0.175)RAS(0.706)PT(0.104)GT(0.006)PS(0.006)R;ASPTGTPS(0.036)RAS(0.882)PT(0.081)GT(0.001)PSR ; 85.61 0.0038827 13306600 1844.19 2332.7 2161.73 1972.42 2230.3 1978.2 2267.84 2054 2065.43 2647.9 TRUE FALSE FALSE 1628.016844 2404.567722 2278.599663 2052.863813 2065.775212 1940.469131 2355.311348 2287.819057 1980.292101 2632.150173 0.618512143 0.913537437 0.865679962 0.779918955 0.784824222 0.737218245 0.894824077 0.869182572 0.75234769 1 11.36202609 -9.672894304 1.540952236 0.999640872 0.781399697 0 0.114012931 0.330727359 1.417682738 0.072669102 0.016360638 2.12E-10 9.672894304 -0.218241175 S(ph)KGDCQTLSEGSPGSSQSGSR ddPTM_HeLa_CUDC101_4h_R1 1 SKGDCQTLSEGSPGSSQSGSR 21 1 O94972-2;O94972-3;O94972 O94972-2 TRIM37 E3 ubiquitin-protein ligase TRIM37 1 0 S(0.991)KGDCQTLSEGS(0.008)PGSSQSGSR 147.84 3.70E-07 3971600 3133.5 2452.1 2480 2650.4 3055.4 2587.1 2916.9 2335.3 3097.9 2078.2 TRUE FALSE FALSE 2766.19588 2527.646295 2614.076302 2758.494768 2830.009229 2537.755378 3029.40581 2601.141112 2970.203251 2065.838774 1.339018279 1.223544802 1.265382533 1.335290441 1.36990808 1.228438255 1.466428963 1.259121063 1.437771083 1 11.01251195 -9.672407771 0.476698088 0.87008221 1.327059955 0 0.154907526 0.856392197 0.203830669 0.196847599 0.017522404 2.13E-10 9.672407771 0.456977745 S(ph)PDSTANVR ddPTM_HeLa_CUDC101_4h_R1 2 SPDSTANVR 9 0 B7ZM87;O75044;E9PDX4;A0A087WW56;A0A286YEY3;A0A075B7B5;P0DMP2 B7ZM87 SRGAP2;SRGAP2B SLIT-ROBO Rho GTPase-activating protein 2;SLIT-ROBO Rho GTPase-activating protein 2B 1 0 S(1)PDSTANVR;S(0.999)PDS(0.001)T(0.001)ANVR ; 120.63 0.0055464 50981000 1238.65 1269.87 1231.38 1655.27 1207.86 1046.13 1397.54 1139.61 1634.68 1495.53 TRUE FALSE FALSE 1093.457325 1308.99319 1297.952128 1722.779065 1118.758574 1026.176813 1451.443586 1269.338596 1567.297799 1486.634521 0.735525315 0.880507731 0.873080847 1.158845056 0.752544461 0.690268387 0.976328456 0.853833661 1.054258983 1 10.5378343 -9.672326809 1.544121169 0.999654585 0.848447032 0.184522392 0.128529755 0.613493973 2.64328804 0.09341834 0.021099221 2.13E-10 9.672326809 -0.151207553 TDLQGSASPSKVEGVHT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 TDLQGSASPSKVEGVHTPR 19 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 TDLQGSASPS(0.001)KVEGVHT(0.999)PR 69.876 0.001628 0 1553.3 894.12 1118.6 1076.2 1321.4 1264.3 931.22 1202.9 1235.7 956.14 TRUE FALSE FALSE 1371.224529 921.6667774 1179.0749 1120.092088 1223.922955 1240.185584 967.1374673 1339.833274 1184.763923 950.4528368 1.442706545 0.969713322 1.240540145 1.178482555 1.287726131 1.304836533 1.017554401 1.409678862 1.246525737 1 9.892471229 -9.672270971 1.534983243 1.00023437 1.254060907 0 0.161645824 0.413579467 1.75703039 0.105522609 0.023687627 2.13E-10 9.672270971 0.253826537 ALLLLCGEDD ddPTM_HeLa_CUDC101_4h_R1 4 ALLLLCGEDD 10 0 P08758;D6RBE9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 0 ;;; ;;; 138.37 0.007926 883333000 33436.7 29704.2 27013.3 27032.5 26389.6 27838.5 27130.6 25979 29683.1 15994.7 FALSE FALSE TRUE 29517.30071 30619.35119 28473.72071 28135.00219 24442.89178 27307.52699 28177.03633 28936.34435 28459.55005 15899.56281 1.856485053 1.92579831 1.790849286 1.769545649 1.537331062 1.717501752 1.772189378 1.819945912 1.789958025 1 13.95669948 -9.220085812 0.865318795 0.979626926 1.772338977 0 0.259056305 0.167843703 0.217242446 0.087311042 0.022062794 6.02E-10 9.220085812 0.792712051 KGDVEGSQSQDEGEGS(ph)GESER ddPTM_HeLa_CUDC101_4h_R1 2 KGDVEGSQSQDEGEGSGESER 21 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 KGDVEGSQSQDEGEGS(0.63)GES(0.37)ER;KGDVEGSQSQDEGEGS(0.949)GES(0.051)ER ; 129.22 2.50E-07 14626900 2212.51 3357.45 3049.3 3758.5 4813.6 4049.5 3727.1 2689.14 4909.3 5125.2 TRUE FALSE FALSE 1953.162932 3460.889055 3214.154382 3911.787876 4458.510318 3972.262534 3870.855495 2995.260828 4706.936576 5094.715082 0.383370395 0.679309637 0.630880104 0.767812883 0.875124565 0.77968296 0.759778601 0.587915277 0.923886125 1 12.31478575 -9.671448987 1.544633189 0.99906741 0.646429605 0.391473421 0.13245359 0.332512238 1.434325228 0.118024823 0.026708637 2.13E-10 9.671448987 -0.352637805 YLS(ph)FTPPEKDGFPSGTPALNAK ddPTM_HeLa_CUDC101_4h_R1 1 YLSFTPPEKDGFPSGTPALNAK 22 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 Y(0.006)LS(0.757)FT(0.223)PPEKDGFPS(0.006)GT(0.008)PALNAK 70.704 0.0018276 495590000 3286.1 2911 2732.1 2504.1 3293.4 3451.5 2880.8 2557.6 2062.1 2212.5 TRUE FALSE FALSE 2900.908339 3000.68446 2879.80559 2606.228022 3050.452443 3385.668388 2991.913421 2848.746846 1977.099365 2199.339952 1.318990426 1.364356819 1.309395388 1.185004628 1.386985419 1.539402031 1.360368786 1.29527354 0.898951235 1 11.1028549 -9.671339126 0.347875494 0.80496272 1.38035748 0.761005966 0.088207493 1.65497729 0.20934913 0.376934519 0.03671871 2.13E-10 9.671339126 0.57539476 TSVPS(ph)PEQPQPYR ddPTM_HeLa_CUDC101_4h_R1 1 TSVPSPEQPQPYR 13 0 Q8TEH3 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 0 T(0.001)SVPS(0.999)PEQPQPYR 113.54 0.00048627 0 1723.6 1670.2 1527.3 1471.4 1391.9 1535.9 1461.9 1567.3 1463.3 1930.8 TRUE FALSE FALSE 1521.562221 1721.656882 1609.870458 1531.410052 1289.22231 1506.605266 1518.285973 1745.715097 1402.982155 1919.315516 0.792762945 0.897016081 0.838773221 0.797893853 0.671709419 0.784970087 0.791055957 0.90955087 0.730980468 1 10.90637618 -9.670251555 0.453811158 1.083612389 0.79645633 0 0.105276413 1.463729579 0.31399223 0.203678096 0.018172724 2.14E-10 9.670251555 -0.287156059 AGTPIRDSHS(ph)PDLQLPTPEVIPSSGSK ddPTM_HeLa_CUDC101_4h_R1 1 AGTPIRDSHSPDLQLPTPEVIPSSGSK 27 1 H3BPE1;H3BQK9;H0Y6T5;H0Y4F5 H3BPE1 MACF1 1 0 AGT(0.027)PIRDS(0.263)HS(0.71)PDLQLPTPEVIPSSGSK 53.281 0.0088166 5637400 798.29 840.9 866.03 995.64 1004.4 1234.5 796.2 511.23 815.55 1095 TRUE FALSE FALSE 704.7156563 866.8071323 912.8502014 1036.246503 930.307413 1210.953969 826.9097007 569.4263567 781.9326838 1088.486891 0.647426866 0.796341361 0.838641428 0.952006415 0.854679483 1.112511303 0.75968733 0.523135705 0.718366652 1 10.08810832 -9.669350131 1.540853874 0.999451056 0.797354523 0 0.173580976 0.564099553 2.421381502 0.114504369 0.025944375 2.14E-10 9.669350131 -0.202096533 ALLYLCGGDD ddPTM_HeLa_CUDC101_4h_R1 3 ALLYLCGGDD 10 0 P07355;P07355-2;A6NMY6 P07355 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein 0 0 ;; ;; 133.47 0.0014412 470760000 12044.2 11915.6 11614.8 10719.2 14437.4 14200.1 12132.5 11315.2 11465.6 8104.7 FALSE FALSE TRUE 10632.39713 12282.70551 12242.73122 11156.37531 13372.38177 13929.25675 12600.45459 12603.27663 10992.98312 8056.492884 1.319730221 1.524572254 1.519610505 1.38476822 1.659826671 1.728947937 1.564012377 1.564362659 1.364487411 1 12.97593623 -7.919957708 0.394930524 0.960654808 1.646660353 0.523418682 0.135923852 0.260238239 0.106479476 0.071246998 0.044354558 1.20E-08 7.919957708 0.686005545 ALMDEVVK(ac)ATSR ddPTM_HeLa_CUDC101_4h_R1 1 ALMDEVVKATSR 12 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 1 ALMDEVVK(1)ATSR 89.548 0.024788 297590 0 0 0 0 0 64.001 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 62.78028756 0 0 0 0 0 ALNHEIEELEK ddPTM_HeLa_CUDC101_4h_R1 2 ALNHEIEELEK 11 0 O95347-2;O95347;Q5T821 O95347-2 SMC2 Structural maintenance of chromosomes protein 2 0 0 ; ; 134.98 0.001556 10161800 17149.9 14677.7 14125 13697.9 15818 15844.3 14051.3 15129.6 15810.1 14814.9 FALSE FALSE TRUE 15139.61472 15129.90254 14888.64023 14256.55957 14651.13765 15542.09638 14593.26335 16851.89251 15158.40099 14726.78032 1.028032903 1.027373412 1.010990855 0.968070363 0.994863598 1.055362818 0.99093373 1.144302566 1.029308556 1 13.84615443 -4.255926673 24.92733909 1.01173396 1.144302625 0.742740097 0.023419221 220.2663722 995967.8643 0.00319327 0.037077803 5.55E-05 4.255926673 0.132568665 S(ph)PTPPLFSLPEAR ddPTM_HeLa_CUDC101_4h_R1 1 SPTPPLFSLPEAR 13 0 A0A087WWS1;Q96FV9;J3KRD7;J3QQZ3;J3KT14;Q96FV9-2 A0A087WWS1 THOC1 THO complex subunit 1 1 0 S(0.999)PT(0.001)PPLFSLPEAR 92.151 0.015539 8703900 632.34 610.26 516.72 799.64 742.68 622.49 553.22 475.62 710.12 696.58 TRUE FALSE FALSE 558.2180638 629.0613873 544.6554462 832.2527755 687.893976 610.6170404 574.5578807 529.7626583 680.848553 692.4367112 0.806164744 0.908474922 0.786577946 1.201918908 0.993439494 0.881838052 0.829762304 0.76507015 0.983264668 1 9.435538404 -9.669209871 1.540024338 0.999708707 0.88855868 0.086991997 0.120705386 0.799869059 3.429238819 0.089273953 0.020221435 2.14E-10 9.669209871 -0.111150027 RPWRPEEAVEDPDEEDEDNT(ph)SEAENGFSLEEVLR ddPTM_HeLa_CUDC101_4h_R1 1 RPWRPEEAVEDPDEEDEDNTSEAENGFSLEEVLR 34 2 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 RPWRPEEAVEDPDEEDEDNT(0.557)S(0.442)EAENGFS(0.001)LEEVLR 76.765 1.76E-06 32044000 673.16 516.54 643.27 567.13 716.79 576.69 598.59 780.28 522.6 248.14 TRUE FALSE FALSE 594.2532052 532.4539851 678.047122 590.2600127 663.9138297 565.6905991 621.6778168 869.1039212 501.0582068 246.6640522 2.409160151 2.158620116 2.748868819 2.392971361 2.691571081 2.293364574 2.520342187 3.52343162 2.031338585 1 7.946403669 -9.667040798 0.285840321 9.26E-16 2.82372104 0.453638921 0.446179806 1.726233731 0.154935883 1.661484644 0.190547516 2.15E-10 9.667040798 2.82372104 DLS(ph)MSEEDQMMR ddPTM_HeLa_CUDC101_4h_R1 1 DLSMSEEDQMMR 12 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 DLS(0.5)MS(0.5)EEDQMMR 203.88 7.67E-17 7926200 1074.4 790.46 805.66 700.54 995.42 912.06 631.77 907.28 979.54 745.86 TRUE FALSE FALSE 948.4604607 814.8131357 849.2164166 729.1110492 921.9898498 894.6639751 656.1375805 1010.561088 939.1629466 741.4235915 1.279242354 1.098984636 1.14538629 0.983393377 1.243539942 1.206683986 0.884969925 1.363000988 1.26670227 1 9.534154211 -9.665639024 1.529475454 1.000338469 1.16130336 0 0.155773698 0.564185547 2.383321498 0.090785374 0.02054905 2.16E-10 9.665639024 0.16096489 ISLSAPAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 ISLSAPAKK 9 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 0 1 ; ISLSAPAK(1)K;ISLSAPAK(1)K 171.99 0.0015107 9719900 6337.2 6770.9 7296.2 10843.1 11760.1 11231.3 10793.8 10233 3844.9 3383.5 FALSE TRUE FALSE 5594.363023 6979.503404 7690.654642 11285.32849 10892.58085 11017.08167 11210.12048 11397.88336 3686.411595 3363.374792 1.663318354 2.075148872 2.286588655 3.355358586 3.238586696 3.275603329 3.332997711 3.388823448 1.096045437 1 11.71569384 -6.813133334 0.670201715 1.159920416 3.463683345 0.965193529 0.172019553 0.089645849 0.082926996 0.049096389 0.080809398 1.54E-07 6.813133334 2.30376293 up LEGQGDVPT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 LEGQGDVPTPK 11 0 Q9Y2Z0-2;Q9Y2Z0 Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog 1 0 LEGQGDVPT(1)PK 115.37 0.026303 18005000 4310.4 3072.8 2560.4 3235.2 2729.7 3117.3 3102.3 4102.7 3058.3 2697.9 TRUE FALSE FALSE 3805.141446 3167.469326 2698.822969 3367.14544 2528.335469 3057.842696 3221.95675 4569.734784 2932.23558 2681.852771 1.418848002 1.181075024 1.006327789 1.255529564 0.942756999 1.140197825 1.201392107 1.703946926 1.093361877 1 11.38901432 -9.664791126 1.52770038 1.000508058 1.242179661 0.110173672 0.203109262 0.607731166 2.561139126 0.146690876 0.033213742 2.16E-10 9.664791126 0.241671603 S(ph)QEDQLSR ddPTM_HeLa_CUDC101_4h_R1 1 SQEDQLSR 8 0 F5H875;F8VVT7;Q9HD42-2;Q9HD42 F5H875 CHMP1A Charged multivesicular body protein 1a 1 0 S(1)QEDQLSR 95.618 0.022855 6279200 2001.8 2493.2 2390.7 2713.9 2924.6 2699.3 2727.5 2744.1 3218.5 3514.2 TRUE FALSE FALSE 1767.152039 2570.012537 2519.948473 2824.584572 2708.858085 2647.81535 2832.700589 3056.477252 3085.832068 3493.297382 0.505869339 0.735698183 0.72136672 0.808572607 0.775444455 0.75797021 0.810895918 0.874954783 0.883357965 1 11.77037375 -9.66338732 1.529545648 0.999202256 0.71402708 0.304581022 0.102261214 0.305363917 1.291352795 0.086926214 0.019756681 2.17E-10 9.66338732 -0.285175176 GLMAGGRPEGQY(ph)S(ph)EDEDTDTDEYKEAK ddPTM_HeLa_CUDC101_4h_R1 1 GLMAGGRPEGQYSEDEDTDTDEYKEAK 27 2 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;H0YC88 H0YE35 RIC8A Synembryn-A 2 0 GLMAGGRPEGQY(0.737)S(0.802)EDEDT(0.327)DT(0.064)DEY(0.07)KEAK 46.818 0.02621 23270000 1659.9 1222.1 1250.2 1415.8 1149.4 1293.7 1339.3 1402.6 1194.8 1219.1 TRUE FALSE FALSE 1465.329038 1259.751452 1317.789594 1473.542444 1064.611052 1269.024828 1390.95725 1562.266314 1145.549838 1211.848739 1.209168266 1.039528624 1.087420856 1.215945849 0.878501597 1.047180879 1.147797745 1.2891595 0.945291109 1 10.24299392 -9.660869214 1.517462748 1.000207146 1.121546375 0.195180802 0.110264495 0.655191545 2.721994981 0.07903579 0.017896198 2.18E-10 9.660869214 0.12133923 (ac)ANDSGGPGGPS(ph)PSERDR ddPTM_HeLa_CUDC101_4h_R1 1 ANDSGGPGGPSPSERDR 17 1 Q9GZT9;Q9GZT9-2;Q9GZT9-3 Q9GZT9 EGLN1 Egl nine homolog 1 1 0 ANDSGGPGGPS(0.871)PS(0.129)ERDR 58.658 0.0016509 0 336.9 496.08 584.74 976.13 552.14 639.58 525.67 342.92 709.97 872.89 TRUE FALSE FALSE 297.4090927 511.3636368 616.3528131 1015.940801 511.4097322 627.3810771 545.945268 381.9566267 680.7047361 867.6980115 0.342756453 0.589333651 0.71033102 1.170846063 0.589386775 0.723040815 0.629188106 0.440195346 0.784494982 1 9.761049213 -9.655973709 1.516404124 0.99884811 0.616426267 0.128196805 0.217785209 0.435531134 1.810205537 0.165016812 0.037667635 2.21E-10 9.655973709 -0.382421843 AMSTTSISSPQPGK(ac)LR ddPTM_HeLa_CUDC101_4h_R1 3 AMSTTSISSPQPGKLR 16 1 B4DDD6;Q9UJU6-4;Q9UJU6-2;Q9UJU6-6;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 0 1 ;; AMSTTSISSPQPGK(1)LR;AMSTTSISSPQPGK(1)LR;AMSTTSISSPQPGK(1)LR 267.93 3.75E-63 10129400 623.74 1064.09 1300.21 1245.63 1785.99 1574.21 1502.43 1838.25 426.13 444.57 FALSE TRUE FALSE 550.6261427 1096.873352 1370.503286 1296.432175 1654.241076 1544.184567 1560.379228 2047.50895 408.564741 441.9256779 1.245970013 2.48203127 3.101207633 2.933597753 3.743256296 3.494217794 3.530863461 4.633152252 0.924510074 1 8.78765995 -6.80532037 0.793864526 1.011838792 3.8694367 0.912717018 0.356554587 0.106464214 0.135090042 0.076825705 0.122241964 1.57E-07 6.80532037 2.857597908 up T(ph)VTPASSAK ddPTM_HeLa_CUDC101_4h_R1 1 TVTPASSAK 9 0 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 0 T(1)VTPASSAK 130.41 0.015396 191970000 8518.3 3131.6 8373 8994.7 4879.4 4389.7 5927 2183.7 9500.2 10927 TRUE FALSE FALSE 7519.797787 3228.080884 8825.669707 9361.542744 4519.456383 4305.973786 6155.606375 2432.283581 9108.597735 10862.00572 0.692302875 0.297190129 0.812526704 0.861861335 0.41607936 0.396425292 0.566709919 0.223925824 0.838574198 1 13.40700291 -9.655346996 0.096516223 1.814188596 5.18E-14 0.463688117 0.186358964 23.76563749 0.512900092 7.455372182 2.830426328 2.21E-10 9.655346996 -1.814188596 FTPPAESGSPSKET(ph)LPPPAAPPKPGK ddPTM_HeLa_CUDC101_4h_R1 1 FTPPAESGSPSKETLPPPAAPPKPGK 26 2 C9K0J5;Q70E73 C9K0J5 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 FT(0.054)PPAES(0.29)GS(0.045)PS(0.29)KET(0.322)LPPPAAPPKPGK 59.814 0.012838 39756000 2497.8 2912.2 2342.5 2591.5 2768.3 2391.9 2265.1 2155.8 2394.9 2863.5 TRUE FALSE FALSE 2205.01167 3001.92143 2469.142636 2697.192571 2564.088024 2346.278493 2352.465666 2401.207558 2296.181208 2846.467775 0.774648387 1.054612828 0.867440924 0.94755774 0.900796435 0.824277202 0.826450834 0.843574475 0.806677395 1 11.47495705 -9.653628361 1.493154621 0.999989636 0.867718697 0 0.094995905 0.435051247 1.744766981 0.056656695 0.012779342 2.22E-10 9.653628361 -0.132270939 SPVGKS(ph)PPSTGSTYGSSQKEESAASGGAAYTK ddPTM_HeLa_CUDC101_4h_R1 1 SPVGKSPPSTGSTYGSSQKEESAASGGAAYTK 32 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.194)PVGKS(0.61)PPS(0.107)T(0.042)GS(0.02)T(0.014)Y(0.006)GS(0.003)S(0.003)QKEES(0.001)AAS(0.001)GGAAYTK 48.291 0.0095626 50854000 1062.2 1316.3 1168 1358.9 1167.7 1079.2 1416.9 1068.8 1210 1540.3 TRUE FALSE FALSE 937.6905262 1356.853643 1231.145613 1414.321816 1081.561097 1058.616058 1471.550308 1190.467872 1160.123288 1531.138227 0.612414026 0.886173187 0.804072154 0.923706162 0.706377176 0.691391567 0.9610826 0.77750516 0.757686842 1 10.58038882 -9.653106396 1.504964777 0.999525612 0.772833749 0 0.127458749 0.364440723 1.489569283 0.08151083 0.018554776 2.22E-10 9.653106396 -0.226691863 GSVFLESDS(ph)SPPSSSDAGLR ddPTM_HeLa_CUDC101_4h_R1 1 GSVFLESDSSPPSSSDAGLR 20 0 Q8TBP0 Q8TBP0 TBC1D16 TBC1 domain family member 16 1 0 GSVFLES(0.094)DS(0.42)S(0.42)PPS(0.038)S(0.014)S(0.014)DAGLR 88.637 0.0021683 15071000 1759.8 1571.9 1548.3 1529.9 1606.5 1509.4 1311.8 1473.1 1753.3 2224.7 TRUE FALSE FALSE 1553.518912 1620.328376 1632.005781 1592.295935 1487.991696 1480.61071 1362.396565 1640.79175 1681.028232 2211.467385 0.702483302 0.73269377 0.737974158 0.720017824 0.672852652 0.669515056 0.616059986 0.741947071 0.760141544 1 11.11078825 -9.653102566 0.398155305 1.147265132 0.676436869 0.25924923 0.083665358 0.612390043 0.101451469 0.126325966 0.011797436 2.22E-10 9.653102566 -0.470828263 ALPQTPRPR ddPTM_HeLa_CUDC101_4h_R1 2 ALPQTPRPR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 0 ; ; 131.62 0.0037168 31293000 852.89 747.49 830.31 861.73 805.14 756.6 975.52 1297.73 835.7 736.71 FALSE FALSE TRUE 752.9155271 770.5192809 875.1990702 896.8750741 745.7464263 742.1691156 1013.146133 1445.458338 801.2520923 732.3280162 1.028112418 1.05215049 1.195091613 1.224690377 1.018322951 1.013438103 1.383459476 1.973785388 1.094116399 1 9.516346179 -4.343716902 2.132233132 1.043969955 2.136662695 0.917045767 0.081638412 0.112348628 0.646005042 0.01284825 0.218192517 4.53E-05 4.343716902 1.09269274 VS(ph)PENLVDK ddPTM_HeLa_CUDC101_4h_R1 4 VSPENLVDK 9 0 A0A088AWL3;O75376;O75376-2;E7EVK1;J3KS29;J3QKP0 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 VS(1)PENLVDK;VS(1)PENLVDK;VS(1)PENLVDK;VS(1)PENLVDK ;;; 128.57 0.0036351 368225000 12063.4 11142 9952 10349.4 10459.2 10479.7 10339.7 9619.5 11560.5 12969.5 TRUE FALSE FALSE 10649.34654 11485.27181 10490.03522 10771.49327 9687.645654 10279.81718 10738.50569 10714.545 11083.9713 12892.35684 0.826020151 0.890858976 0.813663115 0.835494503 0.751425498 0.797357482 0.832935811 0.831077291 0.859731967 1 13.6542284 -9.653020749 0.37400085 1.091521083 0.806319946 0.257778317 0.053891664 1.022241858 0.149813738 0.121807966 0.011657592 2.22E-10 9.653020749 -0.285201137 S(ph)MSIDDTPR ddPTM_HeLa_CUDC101_4h_R1 2 SMSIDDTPR 9 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7;A0A0C4DGY6;A0A1B0GVW2 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 S(1)MSIDDTPR;S(1)MSIDDTPR ; 166.86 1.27E-05 133190000 4421.5 3940.7 3631 3837.5 3964.7 4758.9 3891.3 3473.5 4261.2 3331.2 TRUE FALSE FALSE 3903.218473 4062.108296 3827.302843 3994.009837 3672.23198 4668.131911 4041.388744 3868.9092 4085.551532 3311.385874 1.178726558 1.226709435 1.155800921 1.206144493 1.108971325 1.409721515 1.220452372 1.168365556 1.23378902 1 11.69321942 -9.65296073 0.287307791 0.861261022 1.244318287 0 0.104482444 2.962942406 0.270187921 0.388307226 0.044961506 2.22E-10 9.65296073 0.383057265 LLS(ph)WSDNWR ddPTM_HeLa_CUDC101_4h_R1 1 LLSWSDNWR 9 0 J3KSY6;J3KSX6;Q8TCD5 J3KSY6 NT5C "5(3)-deoxyribonucleotidase, cytosolic type" 1 0 LLS(0.999)WS(0.001)DNWR 96.756 0.020784 17084000 1785.9 1973.2 1789 1926 2414.8 2146.4 2144.7 1485.9 2182.5 2433.5 TRUE FALSE FALSE 1576.559509 2033.991953 1885.718751 2004.550605 2236.665015 2105.460996 2227.421797 1655.04885 2092.536426 2419.025434 0.651733333 0.840831157 0.779536554 0.828660409 0.924614096 0.870375717 0.920793046 0.684180012 0.865032834 1 11.24021022 -9.652903953 1.508763087 0.999440954 0.795971977 0.135860656 0.094904109 0.350084639 1.439604021 0.070323395 0.016056037 2.22E-10 9.652903953 -0.203468977 S(ph)SSPSASLTENEVK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPSASLTENEVK 14 0 O96028-5 O96028-5 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 S(0.444)S(0.444)S(0.112)PSASLTENEVK 237.07 1.53E-43 24259000 3902.8 4209.8 4230.2 4507.3 4296.9 4183.6 3862.1 3651.2 4235.8 4943.1 TRUE FALSE FALSE 3445.3197 4339.498948 4458.897408 4691.127176 3979.926248 4103.8048 4011.062491 4066.837849 4061.198531 4913.698221 0.70116632 0.883143155 0.907442258 0.954703965 0.809965543 0.835176402 0.816302164 0.827653158 0.826505485 1 12.26259354 -9.652172543 1.50370419 0.999620006 0.824675491 0 0.083747828 0.328204491 1.339328942 0.056600749 0.012894606 2.23E-10 9.652172543 -0.174944515 ALQASALK(ac)AWGGK ddPTM_HeLa_CUDC101_4h_R1 1 ALQASALKAWGGK 13 1 P04075;H3BQN4;J3KPS3;P04075-2;H3BR68 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 1 ALQASALK(1)AWGGK 188.91 1.69E-08 451650 393.95 257.94 221.59 313.17 419.51 403.18 433.37 260.69 190.98 318.83 FALSE TRUE FALSE 347.7717782 265.8868257 233.5698257 325.9424262 388.5635831 395.4900132 450.0852261 290.3658959 183.1077236 316.933585 1.097301752 0.838935469 0.736967733 1.028425013 1.226009491 1.247864007 1.420124743 0.916172692 0.577747933 1 8.308036738 -5.786231198 5.908265526 1.002366469 1.221961307 0.274142675 0.204995826 0.165861943 17.58583104 0.023618071 0.044352509 1.64E-06 5.786231198 0.219594839 DFQDYMEPEEGCQGS(ph)PQRR ddPTM_HeLa_CUDC101_4h_R1 6 DFQDYMEPEEGCQGSPQRR 19 1 O43237;O43237-2;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 DFQDY(0.006)MEPEEGCQGS(0.994)PQRR;DFQDY(0.001)MEPEEGCQGS(0.999)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR ;;;;; 136.77 2.50E-05 322690300 14590.7 12565.6 12073.84 12078 14334.6 13125.65 12450.4 12248.31 14002.62 10984.92 TRUE FALSE FALSE 12880.40026 12952.73124 12726.58831 12570.59305 13277.16512 12875.3001 12930.6161 13642.6081 13425.42608 10919.58121 1.179569071 1.186193041 1.165483188 1.151197359 1.215904243 1.179102005 1.184167767 1.249371001 1.229481774 1 13.41462991 -9.652073944 0.387202347 0.906238834 1.200649497 0 0.076736851 0.704999784 0.110594117 0.089026725 0.008406539 2.23E-10 9.652073944 0.294410662 SQS(ph)LPTTLLSPVR ddPTM_HeLa_CUDC101_4h_R1 1 SQSLPTTLLSPVR 13 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 S(0.006)QS(0.646)LPT(0.174)T(0.174)LLS(0.001)PVR 143.64 0.00062686 140230000 1543 959.2 555.43 1100.1 1175.8 1186.7 1041.3 1141.6 718.26 768.56 TRUE FALSE FALSE 1362.131879 988.7518151 585.4582259 1144.966833 1089.063577 1164.065675 1081.46329 1271.555129 688.6530188 763.9885709 1.782921801 1.294197129 0.766318042 1.498670107 1.42549721 1.523668964 1.415549042 1.664364073 0.901391781 1 9.577407246 -9.651628969 1.499664221 1.000783307 1.459847257 0.328655716 0.260509105 0.446774994 1.811994424 0.201942872 0.045921659 2.23E-10 9.651628969 0.45906395 TLDRS(ph)GDLGDMEPLKGTTPLMQK ddPTM_HeLa_CUDC101_4h_R1 1 TLDRSGDLGDMEPLKGTTPLMQK 23 2 O60716-5;O60716-3;A0A669KB05;O60716-8;O60716-7;A0A669KB62;O60716-19;O60716-11;O60716-13;O60716-21;O60716-24;O60716-16;O60716-23;O60716-15;O60716-27;O60716-29;O60716-31;O60716-32 O60716-5 CTNND1 Catenin delta-1 1 0 T(0.23)LDRS(0.77)GDLGDMEPLKGTTPLMQK 80.68 0.00021483 22215000 1177.7 1103.3 1234.4 1218.4 1344.4 1032.4 1027.7 1023.3 1117.2 1284.8 TRUE FALSE FALSE 1039.651791 1137.291365 1301.135398 1268.091618 1245.22629 1012.70869 1067.338733 1139.788336 1071.148543 1277.157952 0.814035405 0.89048607 1.018774064 0.992901165 0.974997876 0.792939267 0.835713963 0.892441169 0.838697 1 10.31872125 -9.65119629 1.504303169 0.999718631 0.890824966 0 0.087608897 0.542848707 2.218261282 0.058241907 0.013297152 2.23E-10 9.65119629 -0.108893665 GLGHPPSS(ph)PLLK ddPTM_HeLa_CUDC101_4h_R1 2 GLGHPPSSPLLK 12 0 B9EGQ5;A0A669KBG4;M0QXA7;A0A669KBH9;A0A2R8YFV2;A0A669KAV7;O95785-4;O95785-3;O95785 B9EGQ5 WIZ Protein Wiz 1 0 GLGHPPS(0.21)S(0.79)PLLK;GLGHPPS(0.247)S(0.753)PLLK ; 97.452 0.013742 83857000 7708.2 7304.4 7648.8 7390.6 9168.7 8410.7 7465.1 5749.6 7489.3 8675.1 TRUE FALSE FALSE 6804.656481 7529.439906 8062.317264 7692.020613 8492.343268 8250.279911 7753.031408 6404.111223 7180.587884 8623.500119 0.7890829 0.873130377 0.934924004 0.891983592 0.984790764 0.956720565 0.899058538 0.742634793 0.83267673 1 13.07405784 -9.650525938 1.506451495 0.999618231 0.876141589 0 0.086015388 0.445131651 1.825644248 0.054153463 0.0123969 2.24E-10 9.650525938 -0.123476642 ALQPLEEGEDEEK ddPTM_HeLa_CUDC101_4h_R1 1 ALQPLEEGEDEEK 13 0 Q14764 Q14764 MVP Major vault protein 0 0 215.53 1.81E-23 5879300 1896.1 1603.9 1389.6 1720.7 1370 1827.8 1466.3 1495.4 1875.8 1934.3 FALSE FALSE TRUE 1673.842032 1653.314258 1464.725979 1790.877584 1268.937829 1792.93776 1522.855682 1665.630291 1798.47873 1922.794698 0.870525613 0.859849603 0.761769304 0.931393032 0.659944523 0.932464481 0.792001187 0.866254881 0.935346208 1 10.90898901 -8.576320398 0.535564551 1.007668199 0.822195416 0.315177343 0.078534053 0.63305764 0.360055259 0.055001335 0.019577083 2.65E-09 8.576320398 -0.185472783 TLSVAAAFNEDEDS(ph)EPEEMPPEAK ddPTM_HeLa_CUDC101_4h_R1 11 TLSVAAAFNEDEDSEPEEMPPEAK 24 0 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 0 TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK ;;;;;;;;;; 130.49 5.04E-09 214146300 70829.9 64187.9 62395.2 60241 73297.2 64620.5 60735.1 62663.6 73469.1 68222 TRUE FALSE FALSE 62527.32649 66165.45312 65768.47325 62697.88836 67890.21158 63387.97163 63077.67315 69796.97093 70440.6726 67816.21251 0.92201148 0.975658337 0.969804576 0.924526541 1.001091171 0.934702327 0.930126747 1.029207742 1.038699597 1 16.04934259 -9.64958615 1.498558786 0.999901381 0.954109052 0.241299524 0.036191161 0.510888599 2.070201637 0.022999153 0.005245062 2.24E-10 9.64958615 -0.045792329 TSGVPGNRPGS(ph)VIR ddPTM_HeLa_CUDC101_4h_R1 1 TSGVPGNRPGSVIR 14 1 O60271;A0A087X2D8;O60271-9;O60271-4;O60271-2 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 TSGVPGNRPGS(1)VIR 102.15 0.0025393 0 2855.7 2140.7 2419.4 2679 2702.3 2474.2 2528.7 2164.2 1816.3 2074.2 TRUE FALSE FALSE 2520.959175 2206.65243 2550.200082 2788.2612 2502.956713 2427.008757 2626.232806 2410.56378 1741.431345 2061.862566 1.222661111 1.070222849 1.236842903 1.352302159 1.213929946 1.17709531 1.273718651 1.169119523 0.844591378 1 11.00973246 -9.648725365 0.411166414 0.899291234 1.231779777 0.644033154 0.083531024 1.582449196 0.280353175 0.236103776 0.021972007 2.25E-10 9.648725365 0.332488543 RKDDAQQRSWALY(ph)EDEGVIR ddPTM_HeLa_CUDC101_4h_R1 2 RKDDAQQRSWALYEDEGVIR 20 3 H7C2K2;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-3;Q9NZQ3-2;Q9NZQ3 H7C2K2 NCKIPSD NCK-interacting protein with SH3 domain 1 0 RKDDAQQRS(0.008)WALY(0.992)EDEGVIR;RKDDAQQRS(0.003)WALY(0.997)EDEGVIR ; 70.802 0.0036592 72167000 1946.59 1497.4 1399.25 1237.83 1822 1489.91 1688.51 1545.41 1729.39 1424.25 TRUE FALSE FALSE 1718.413671 1543.533119 1474.897687 1288.314058 1687.59469 1461.492449 1753.636396 1721.333228 1658.103812 1415.778498 1.213758843 1.090236306 1.041757372 0.909968657 1.191990621 1.032288915 1.238637541 1.215820999 1.171160471 1 10.46737985 -9.647719115 1.494797307 1.000265708 1.126060718 0 0.111320651 0.594220918 2.395452428 0.073340731 0.016737509 2.25E-10 9.647719115 0.12579501 KASGS(ph)ENEGDYNPGR ddPTM_HeLa_CUDC101_4h_R1 3 KASGSENEGDYNPGR 15 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 0 KAS(0.369)GS(0.631)ENEGDYNPGR;KASGS(1)ENEGDYNPGR;KAS(0.022)GS(0.978)ENEGDYNPGR ;; 185.63 1.71E-10 35699100 4476.16 4472.23 4212.55 4625.05 4626.48 4948.2 4463.19 3420.08 4055.47 5035.35 TRUE FALSE FALSE 3951.47131 4610.014105 4440.293195 4813.67953 4285.193788 4853.821329 4635.336733 3809.408083 3888.30181 5005.399514 0.789441742 0.921008222 0.887100657 0.961697366 0.856114237 0.969717066 0.926067284 0.761059746 0.77682147 1 12.28926951 -9.64700928 1.494783091 0.999710837 0.875758078 0 0.094388646 0.400202103 1.613765133 0.048648427 0.011116253 2.25E-10 9.64700928 -0.123952759 FKVQGEAVSNIQENTQT(ph)PTVQEESEEEEVDETGVEVK ddPTM_HeLa_CUDC101_4h_R1 1 FKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 37 1 E9PAV3;F8VZJ2;F8W0W4;H0YHX9;Q13765;E9PAV3-2 E9PAV3 NACA "Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha" 1 0 FKVQGEAVSNIQENT(0.057)QT(0.314)PT(0.314)VQEES(0.314)EEEEVDETGVEVK 96.686 2.17E-13 5224000 1193.9 849.23 855.57 857.21 1207.6 835.58 865.13 1063.2 1180.8 860.02 TRUE FALSE FALSE 1053.952852 875.3937697 901.8247022 892.170729 1118.517754 819.6427037 898.4983539 1184.23039 1132.126924 854.9045628 1.232831006 1.02396666 1.054883482 1.043591025 1.308353941 0.958753455 1.050992582 1.385219406 1.324272876 1 9.739619564 -9.646770366 1.486338965 1.000140568 1.137622928 0 0.16387557 0.666287971 2.651060655 0.089664254 0.020376447 2.26E-10 9.646770366 0.13748236 DRNVIPDT(ph)PPSTPLVPSR ddPTM_HeLa_CUDC101_4h_R1 2 DRNVIPDTPPSTPLVPSR 18 1 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 DRNVIPDT(0.993)PPS(0.003)T(0.003)PLVPSR;DRNVIPDT(1)PPSTPLVPSR ; 126.26 8.81E-05 21527000 3006.7 2847.3 2918.5 2900.5 3429.2 2760 2509.2 2867.3 3069.8 3225.5 TRUE FALSE FALSE 2654.259184 2935.021938 3076.282938 3018.794927 3176.234748 2707.357598 2605.980685 3193.701842 2943.261545 3206.314583 0.827822447 0.915388014 0.959445138 0.941515515 0.990618564 0.844383023 0.812765129 0.996066281 0.91795782 1 11.64670026 -9.645836282 1.4942746 0.999736896 0.898295068 0 0.067186985 0.471248591 1.899662146 0.046840975 0.01072177 2.26E-10 9.645836282 -0.101441829 RPAS(ph)PALLLPPCMLK ddPTM_HeLa_CUDC101_4h_R1 2 RPASPALLLPPCMLK 15 1 Q9HAW0-2;Q9HAW0 Q9HAW0-2 BRF2 Transcription factor IIIB 50 kDa subunit 1 0 RPAS(1)PALLLPPCMLK;RPAS(1)PALLLPPCMLK ; 100.45 0.003014 52899000 9158.8 6873.3 6273.5 6421.8 7542.7 7727.3 6822 7178.8 7393.2 6313.2 TRUE FALSE FALSE 8085.219348 7085.058226 6612.664386 6683.708761 6986.290048 7579.914627 7085.126825 7996.005574 7088.449167 6275.648806 1.288347962 1.128976214 1.05370211 1.065022752 1.113237892 1.207829638 1.128987145 1.274132097 1.129516547 1 12.6155489 -9.645554819 1.4925333 1.00040693 1.17041962 0.077289448 0.085013469 0.372808606 1.498862689 0.062071521 0.014197866 2.26E-10 9.645554819 0.170012691 S(ph)QAGVSSGAPPGR ddPTM_HeLa_CUDC101_4h_R1 2 SQAGVSSGAPPGR 13 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 S(1)QAGVSSGAPPGR;S(1)QAGVSSGAPPGR ; 117.48 0.0026238 18676000 1691.52 1654.9 1958.79 1962.6 2902.5 2527 2312.3 1116.07 3170.3 2678.7 TRUE FALSE FALSE 1493.24259 1705.885507 2064.688112 2042.643311 2688.388358 2478.801685 2401.486186 1243.118897 3039.618892 2662.766973 0.560786056 0.640643933 0.775391964 0.767113056 1.00962209 0.930911984 0.90187621 0.466852304 1.141526436 1 11.37871046 -9.644814829 1.50109117 0.998981354 0.740608366 0.337832444 0.166686756 0.486542926 1.983448046 0.123265038 0.028400059 2.27E-10 9.644814829 -0.258372988 NVAEALGHS(ph)PKDPGGGGGPVR ddPTM_HeLa_CUDC101_4h_R1 2 NVAEALGHSPKDPGGGGGPVR 21 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 NVAEALGHS(1)PKDPGGGGGPVR;NVAEALGHS(1)PKDPGGGGGPVR ; 55.007 0.013405 127796000 6764 6703.8 7206.6 5874.3 7744 6335 6334.1 5902.1 6974.2 7465.8 TRUE FALSE FALSE 5971.134174 6910.336132 7596.210595 6113.879345 7172.740548 6214.17043 6578.408359 6573.971207 6686.720524 7421.39309 0.804584005 0.931137328 1.023555888 0.823818287 0.966495166 0.837332069 0.886411524 0.885813637 0.901006111 1 12.85747431 -9.642800753 1.482944292 0.999804073 0.884055304 0.003097672 0.070259523 0.41805879 1.657189739 0.047211772 0.010779245 2.28E-10 9.642800753 -0.115748769 RADDFPVRDDPS(ph)DVT(ph)DEDEGPAEPPPPPK ddPTM_HeLa_CUDC101_4h_R1 1 RADDFPVRDDPSDVTDEDEGPAEPPPPPK 29 2 Q3YEC7-2;Q3YEC7 Q3YEC7-2 RABL6 Rab-like protein 6 2 0 RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPK 49.745 0.031585 14540000 2353.3 2087.5 2109.6 1769 2013.6 2106 1915.4 1751 2207.8 2767.1 TRUE FALSE FALSE 2077.449741 2151.813401 2223.651357 1841.147466 1865.06074 2065.831559 1989.27762 1950.326762 2116.79355 2750.641166 0.75526018 0.782295207 0.808412011 0.669352109 0.678045818 0.751036371 0.723205064 0.709044417 0.769563684 1 11.42555223 -9.641889646 0.337895304 1.148561158 0.705821121 0.170403591 0.081111924 0.942716876 0.114880327 0.161347634 0.016567311 2.28E-10 9.641889646 -0.442740037 KVPS(ph)FTFTPTVTYQR ddPTM_HeLa_CUDC101_4h_R1 1 KVPSFTFTPTVTYQR 15 1 A0A0A0MSX4;Q9Y6N7-4;Q9Y6N7-3;Q9Y6N7;Q9Y6N7-2 A0A0A0MSX4 ROBO1 Roundabout homolog 1 1 0 KVPS(0.448)FT(0.015)FT(0.091)PT(0.446)VTYQR 107.13 0.0063391 11292000 1393.6 1001.5 711.81 1016.8 1004.7 1151.7 1022.3 978.99 803.39 810.69 TRUE FALSE FALSE 1230.244321 1032.355028 750.2926017 1058.269499 930.5852826 1129.733241 1061.730453 1090.434264 770.2739242 805.8679798 1.526607771 1.281047335 0.931036622 1.313204551 1.154761457 1.40188377 1.317499243 1.353117746 0.955831406 1 9.6543997 -9.641806736 1.485091082 1.000721321 1.312609151 0.380476111 0.151921991 0.39153514 1.558051322 0.119119145 0.027285883 2.28E-10 9.641806736 0.31188783 SAYQEYDS(ph)DSDVPEELKR ddPTM_HeLa_CUDC101_4h_R1 2 SAYQEYDSDSDVPEELKR 18 1 H0Y7Q2;Q96JG6-3;Q96JG6 H0Y7Q2 CCDC132 Coiled-coil domain-containing protein 132 1 0 SAYQEY(0.006)DS(0.983)DS(0.011)DVPEELKR;SAYQEYDS(1)DSDVPEELKR ; 117.62 6.89E-05 121194000 6007.4 4302.4 4037.3 4171.1 4745.7 4643.7 4105.1 3658.5 5096.4 3515.7 TRUE FALSE FALSE 5303.221679 4434.951844 4255.56865 4341.215487 4395.619166 4555.129159 4263.435082 4074.968852 4886.324235 3494.78846 1.517465718 1.269018682 1.217689911 1.242196927 1.257764015 1.303406261 1.219940815 1.166013022 1.398174536 1 11.77098942 -9.641471113 1.488187106 1.000893486 1.307090454 0 0.153260822 0.281488723 1.125849523 0.084111826 0.01932018 2.28E-10 9.641471113 0.306196968 RKPS(ph)PEPEGEVGPPK ddPTM_HeLa_CUDC101_4h_R1 2 RKPSPEPEGEVGPPK 15 2 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 RKPS(1)PEPEGEVGPPK;RKPS(1)PEPEGEVGPPK ; 69.081 0.016935 107991000 11581.3 9448.6 11023.9 9725.5 10473.4 9015.5 8925.2 10236.3 11406.5 12959.7 TRUE FALSE FALSE 10223.75757 9739.700167 11619.88538 10122.14793 9700.798148 8843.544358 9269.447954 11401.55902 10936.31924 12882.61513 0.793608865 0.756034398 0.901981877 0.785721519 0.753014668 0.686471207 0.719531544 0.885034514 0.848920746 1 13.65313787 -9.639979675 0.369059843 1.112829454 0.763167833 0.240544844 0.078950976 1.705994569 0.245523155 0.246503255 0.024114603 2.29E-10 9.639979675 -0.349661621 EESQDTLTHSSPS(ph)FNLDTLLVPK ddPTM_HeLa_CUDC101_4h_R1 1 EESQDTLTHSSPSFNLDTLLVPK 23 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 EESQDTLTHS(0.062)S(0.062)PS(0.84)FNLDT(0.036)LLVPK 103.31 2.75E-05 3480500 3326.1 1969.1 1648.3 1969.5 3119.3 2733.1 2668.8 2324.6 2073.8 1903.6 TRUE FALSE FALSE 2936.2196 2029.765637 1737.412084 2049.824723 2889.195454 2680.970671 2771.73651 2589.223068 1988.317086 1892.277303 1.551685684 1.072657604 0.918159342 1.083258104 1.526835126 1.416795872 1.46476233 1.368310588 1.050753546 1 10.88590781 -9.639314367 1.469746569 1.0002052 1.328986455 0.216528391 0.203186185 0.514671376 2.000219567 0.164272584 0.037388609 2.29E-10 9.639314367 0.328781255 LYGPSS(ph)VSFADDFVR ddPTM_HeLa_CUDC101_4h_R1 2 LYGPSSVSFADDFVR 15 0 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PQ34;E9PJH8;E9PIG2;E9PRS3;E9PNX1 P50454 SERPINH1 Serpin H1 1 0 LYGPS(0.037)S(0.946)VS(0.016)FADDFVR;LYGPS(0.152)S(0.787)VS(0.061)FADDFVR ; 199.38 2.11E-16 7286800 2667.6 3049.6 2815.8 2530.5 3552.9 3081.55 2676.2 2268.9 3589.9 3450.9 TRUE FALSE FALSE 2354.907972 3143.554561 2968.030665 2633.704728 3290.809645 3022.774568 2779.42193 2527.182405 3441.922803 3430.373893 0.686487259 0.916388318 0.865220748 0.767760253 0.95931515 0.88117933 0.810238772 0.736707567 1.003366662 1 11.74415012 -9.639306377 1.476899261 0.999672427 0.813257804 0.421610399 0.079725463 0.350163634 1.376689149 0.063464314 0.014518 2.29E-10 9.639306377 -0.186414622 EEQTDTS(ph)DGESVTHHIR ddPTM_HeLa_CUDC101_4h_R1 2 EEQTDTSDGESVTHHIR 17 0 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 1 0 EEQT(0.051)DT(0.051)S(0.898)DGESVTHHIR;EEQT(0.062)DT(0.083)S(0.855)DGESVTHHIR ; 140.84 0.00012652 27659000 5044.1 3371.6 2962.2 3030.8 4982.9 4881.5 4330.5 3003.7 5213.6 3378.33 TRUE FALSE FALSE 4452.838244 3475.475 3122.345492 3154.409124 4615.321394 4788.393521 4497.528836 3345.629067 4998.693201 3358.235543 1.325945779 1.034911029 0.929757741 0.939305503 1.374329268 1.425865893 1.339253539 0.996246101 1.488487969 1 11.71348771 -9.638803778 1.467686615 1.000086128 1.19452015 0 0.235312829 0.739676394 2.865724451 0.139511972 0.031735324 2.30E-10 9.638803778 0.194434022 IIYDS(ph)DSESEETLQVK ddPTM_HeLa_CUDC101_4h_R1 3 IIYDSDSESEETLQVK 16 0 P35251-2;P35251;D6RAD2;E0CX09 P35251-2 RFC1 Replication factor C subunit 1 1 0 IIYDS(0.788)DS(0.113)ES(0.077)EET(0.022)LQVK;IIYDS(0.565)DS(0.32)ES(0.097)EET(0.017)LQVK;IIY(0.024)DS(0.975)DSES(0.001)EETLQVK ;; 115.58 0.00094817 18065900 2060.65 2741.74 2354.9 2110.49 2539.4 2370.37 1947.27 1694.9 2313.3 2777.34 TRUE FALSE FALSE 1819.103731 2826.20976 2482.213017 2196.564905 2352.073521 2325.159142 2022.376856 1887.840565 2217.944795 2760.820258 0.658899733 1.023684809 0.899085339 0.795620395 0.851947357 0.842198667 0.732527534 0.683796984 0.803364431 1 11.43088125 -9.637829027 1.463623424 0.999983593 0.796134547 0 0.117529977 0.405648955 1.561915737 0.080096271 0.018198552 2.30E-10 9.637829027 -0.203849045 VNRPGWNEDDDVSVSDES(ph)ELPTSTTLK ddPTM_HeLa_CUDC101_4h_R1 1 VNRPGWNEDDDVSVSDESELPTSTTLK 27 1 Q86WG5-3;Q86WG5 Q86WG5-3 SBF2 Myotubularin-related protein 13 1 0 VNRPGWNEDDDVS(0.19)VS(0.15)DES(0.654)ELPT(0.004)S(0.001)TTLK 59.359 0.0021066 9646500 785.48 772.08 894.42 595.21 848.29 1031.6 696.78 694.04 890.84 917.78 TRUE FALSE FALSE 693.4072251 795.8668697 942.7750507 619.4852365 785.7133367 1011.923949 723.655038 773.0467082 854.1191981 912.3210037 0.76004742 0.872353992 1.033380846 0.679021127 0.86122465 1.109175328 0.793202212 0.847340689 0.936204685 1 9.833397721 -9.637036823 1.47723753 0.999644567 0.856816225 0.083235458 0.119800796 0.604603494 2.380615255 0.083842559 0.019261218 2.31E-10 9.637036823 -0.142828342 DSYVGDEAQS(ph)KR ddPTM_HeLa_CUDC101_4h_R1 2 DSYVGDEAQSKR 12 1 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;C9JUM1;C9JZR7;C9JTX5;P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65 P60709;P63267;P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 DSYVGDEAQS(1)KR;DSYVGDEAQS(1)KR ; 190.57 7.53E-11 126174000 7579.8 7825.1 7877.4 7630.6 8544 7696.8 6416.7 6439.2 8790.5 8623.7 TRUE FALSE FALSE 6691.307334 8066.182056 8303.276072 7941.80885 7913.726142 7549.996364 6664.194268 7172.2125 8428.151869 8572.405849 0.780563526 0.94094729 0.968605106 0.926438737 0.923162795 0.880732492 0.777400695 0.836662732 0.983172288 1 13.06548444 -9.635070165 1.466501662 0.99982345 0.868610062 0.330475476 0.062414284 0.407083464 1.576653 0.051679805 0.011823636 2.32E-10 9.635070165 -0.131213388 TWTTPEVT(ph)SPPPSPR ddPTM_HeLa_CUDC101_4h_R1 1 TWTTPEVTSPPPSPR 15 0 Q5T1S5;Q7Z6M1-2;Q7Z6M1 Q5T1S5 RABEPK Rab9 effector protein with kelch motifs 1 0 TWTT(0.006)PEVT(0.694)S(0.3)PPPSPR 139.77 0.002166 13164000 2348.7 2390.8 1739.8 2020.6 2377.6 2152 2111.4 1912.1 2270.4 2232.7 TRUE FALSE FALSE 2073.388946 2464.457714 1833.858851 2103.008802 2202.209185 2110.954185 2192.837405 2129.765735 2176.813151 2219.419801 0.93420314 1.110406293 0.826278494 0.947548905 0.992245443 0.951128842 0.988022818 0.959604728 0.980802798 1 11.11596686 -9.634614834 1.418844042 1.000252232 0.960270816 0.020889041 0.065968073 1.187754045 4.25154179 0.045450268 0.010052534 2.32E-10 9.634614834 -0.039981417 ALSAIADLLTNEHER ddPTM_HeLa_CUDC101_4h_R1 2 ALSAIADLLTNEHER 15 0 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-19;O60716-4;O60716-6;O60716-11;O60716-13;O60716-21;O60716-24;O60716-9;O60716-17;O60716-16;O60716-10;O60716-23;O60716-15;O60716-18;O60716-12;O60716-22;O60716-20;O60716-14;O60716-27;O60716-29;O60716-25;O60716-26;O60716-31;O60716-32;O60716-30;O60716-28 O60716-5 CTNND1 Catenin delta-1 0 0 ; ; 175.01 3.78E-07 6195300 11051.5 11507.1 9923.6 9394.8 11448.4 9908.5 9550.4 9549.5 10593.8 11361.4 FALSE FALSE TRUE 9756.059923 11861.62011 10460.09983 9777.960552 10603.87434 9719.511871 9918.762127 10636.57648 10157.11908 11293.82189 0.863840427 1.050275118 0.926178927 0.865779596 0.938909294 0.860604317 0.878246729 0.941804872 0.899351803 1 13.46324616 -6.514476357 24.80583485 0.944676355 0.89628766 0.187734625 0.054054144 618.9586385 1827313.719 0.009909233 0.014417527 3.06E-07 6.514476357 -0.048388695 VSEEQTQPPS(ph)PAGAGMSTAMGR ddPTM_HeLa_CUDC101_4h_R1 13 VSEEQTQPPSPAGAGMSTAMGR 22 0 H3BM18;X6RHM1;Q16666-3;Q16666-2;Q16666 H3BM18 IFI16 Gamma-interferon-inducible protein 16 1 0 VSEEQT(0.001)QPPS(0.815)PAGAGMS(0.092)T(0.092)AMGR;VSEEQT(0.016)QPPS(0.984)PAGAGMSTAMGR;VSEEQTQPPS(0.98)PAGAGMS(0.01)T(0.01)AMGR;VSEEQTQPPS(0.977)PAGAGMS(0.023)TAMGR;VSEEQTQPPS(1)PAGAGMSTAMGR;VSEEQT(0.002)QPPS(0.998)PAGAGMSTAMGR;VSEEQTQPPS(0.999)PAGAGMSTAMGR;VSEEQTQPPS(0.901)PAGAGMS(0.093)T(0.005)AMGR;VSEEQTQPPS(0.57)PAGAGMS(0.215)T(0.215)AMGR;VSEEQT(0.022)QPPS(0.975)PAGAGMS(0.001)T(0.002)AMGR;VSEEQT(0.003)QPPS(0.995)PAGAGMS(0.003)TAMGR;VSEEQTQPPS(1)PAGAGMSTAMGR;VSEEQTQPPS(1)PAGAGMSTAMGR ;;;;;;;;;;;; 222.92 2.78E-35 854661400 37438.85 36383 37593.3 34016.68 38054.4 37743.54 35347.62 36433.56 33498.58 41468.4 TRUE FALSE FALSE 33050.32476 37503.91711 39625.70751 35404.02724 35247.20273 37023.64486 36710.98954 40581.0092 32117.75435 41221.74411 0.801769199 0.90980908 0.961281682 0.858867765 0.855063353 0.898158136 0.890573418 0.984456385 0.779145935 1 15.33111793 -9.633520943 1.47022902 0.99971405 0.881236105 0 0.084869011 0.34658053 1.351331732 0.039720429 0.009136358 2.33E-10 9.633520943 -0.118477945 S(ph)PSAPAATSS(ph)AS(ph)S(ph)S(ph)TSSYK ddPTM_HeLa_CUDC101_4h_R1 1 SPSAPAATSSASSSTSSYK 19 0 A0A087X0S7;A0A0C4DH00;A0A087WTU1;A0A0B4J2G4;Q15345-3;Q15345 A0A087X0S7 LRRC41 Leucine-rich repeat-containing protein 41 5 0 S(0.854)PS(0.164)APAAT(0.363)S(0.363)S(0.273)AS(0.472)S(0.472)S(0.472)T(0.472)S(0.565)S(0.274)Y(0.254)K 41.912 0.030527 7532500 1403.8 1334.9 1596.6 1399 1684.8 1591.1 1306.5 1331.8 1591.8 1741.8 TRUE FALSE FALSE 1239.248692 1376.026687 1682.917025 1456.057267 1560.515661 1560.752418 1356.892143 1483.406729 1526.18533 1731.439696 0.715733095 0.794729779 0.971975535 0.840951764 0.901282132 0.901418872 0.783678545 0.856747556 0.881454511 1 10.75775643 -9.633319375 1.476435468 0.999413531 0.829834679 0.106977577 0.077386067 0.342984481 1.350859006 0.056327793 0.013017639 2.33E-10 9.633319375 -0.169578853 SEGPSLS(ph)PSGK ddPTM_HeLa_CUDC101_4h_R1 1 SEGPSLSPSGK 11 0 A8MU93 A8MU93 C17orf100 Uncharacterized protein C17orf100 1 0 SEGPS(0.007)LS(0.991)PS(0.003)GK 114.71 0.0006419 0 2296.9 2076.5 2022.9 2172.2 2286.8 1893.2 1871.6 1918.4 2458.1 2611.7 TRUE FALSE FALSE 2027.660864 2140.474504 2132.264093 2260.791705 2118.10732 1857.090364 1943.788239 2136.782902 2356.776078 2596.165492 0.781021422 0.82447537 0.821312855 0.870819565 0.8158599 0.715320487 0.748715074 0.823053426 0.907791158 1 11.34216664 -9.633107595 0.50320893 1.075040829 0.791496782 0.567024445 0.050595019 0.822321737 0.225936817 0.1214225 0.011506295 2.33E-10 9.633107595 -0.283544047 HGGPGPGGPEPELS(ph)PITEGSEAR ddPTM_HeLa_CUDC101_4h_R1 2 HGGPGPGGPEPELSPITEGSEAR 23 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 HGGPGPGGPEPELS(0.977)PIT(0.02)EGS(0.003)EAR;HGGPGPGGPEPELS(0.998)PIT(0.002)EGSEAR ; 209.3 1.02E-26 55307000 2317.05 2391.5 2058.5 2189.04 2454.3 2152.41 2267.6 2302.83 2585.2 2562.9 TRUE FALSE FALSE 2045.448911 2465.17928 2169.788737 2278.318513 2273.251179 2111.356365 2355.062092 2564.974859 2478.636962 2547.655757 0.80287492 0.967626522 0.851680503 0.894280362 0.892291344 0.828744763 0.924403576 1.006798054 0.972908901 1 11.31495464 -9.633089255 1.464471962 0.999808849 0.881744962 0.241067111 0.059611421 0.383656255 1.482280876 0.043750913 0.010030105 2.33E-10 9.633089255 -0.118063887 GFS(ph)LEELR ddPTM_HeLa_CUDC101_4h_R1 2 GFSLEELR 8 0 P26373;P26373-2;J3QSB4 P26373 RPL13 60S ribosomal protein L13 1 0 GFS(1)LEELR;GFS(1)LEELR ; 117.53 0.0081379 7038000 5378.3 7042.6 4637.9 4991 6090.1 6143.3 5238.8 4810.4 7016.1 6618.4 TRUE FALSE FALSE 4747.863827 7259.574158 4888.638903 5194.554553 5640.845456 6026.126788 5440.862271 5357.996492 6726.893388 6579.033462 0.721665858 1.103440832 0.743063389 0.78956196 0.857397289 0.915959285 0.827000243 0.814404809 1.022474415 1 12.68365994 -9.632664036 1.44885204 1.000133944 0.83252412 0.282049516 0.102219991 0.453535516 1.708386669 0.073158862 0.016598059 2.33E-10 9.632664036 -0.167609824 S(ph)ATPEPVTDNR ddPTM_HeLa_CUDC101_4h_R1 1 SATPEPVTDNR 11 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 S(0.986)AT(0.014)PEPVTDNR 100.09 0.01373 12870000 4694.5 8297.5 7905.5 8388.3 9813 10316 7911.8 4584.4 11663 12423 TRUE FALSE FALSE 4144.217826 8553.13614 8332.895243 8730.411131 9089.11454 10119.23949 8216.960776 5106.269565 11182.2462 12349.10744 0.33558845 0.692611687 0.674777127 0.706966975 0.736013885 0.81943084 0.665389042 0.413493007 0.90551048 1 13.59211915 -9.631903718 1.46888159 0.998939948 0.601314733 0.432580088 0.143786808 0.31326393 1.219601601 0.120333893 0.027731007 2.33E-10 9.631903718 -0.397625215 SPAAALAS(ph)SPSEGWLR ddPTM_HeLa_CUDC101_4h_R1 1 SPAAALASSPSEGWLR 16 0 Q6P5Z2 Q6P5Z2 PKN3 Serine/threonine-protein kinase N3 1 0 SPAAALAS(0.416)S(0.416)PS(0.169)EGWLR 68.751 0.034473 6403500 1072.9 688.86 832.63 630.34 762.22 899.93 778.92 728.62 942.52 625.01 TRUE FALSE FALSE 947.1362884 710.0829601 877.6444964 656.0479898 705.9925492 882.7653346 808.9632053 811.5631556 903.6689267 621.2924127 1.524461379 1.142912654 1.412611 1.055940772 1.136328941 1.420853235 1.302065161 1.306249906 1.454498571 1 9.279128626 -9.630415563 1.462220867 1.000640617 1.315436486 0 0.196658378 0.354200483 1.365025741 0.107464391 0.024713056 2.34E-10 9.630415563 0.314795869 LSPATPT(ph)SEGPK ddPTM_HeLa_CUDC101_4h_R1 2 LSPATPTSEGPK 12 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 LSPAT(0.098)PT(0.753)S(0.149)EGPK;LSPAT(0.016)PT(0.763)S(0.222)EGPK ; 143.42 4.01E-06 16525000 3458.2 3471.3 3707.4 3526.9 3933.6 3600.6 3564.4 3314.5 3807 4273.6 TRUE FALSE FALSE 3052.835038 3578.246638 3907.833258 3670.742227 3643.426165 3531.924554 3701.880102 3691.809282 3650.073849 4248.180437 0.718621792 0.842301002 0.919884011 0.864073991 0.85764393 0.83139702 0.871403688 0.869033069 0.859208761 1 12.05262933 -9.630008645 1.467251137 0.999500488 0.830850445 0.027353344 0.065735674 0.279264481 1.085233532 0.045429249 0.010491882 2.34E-10 9.630008645 -0.168650043 DSAYISS(ph)SPLGSHQVFDFR ddPTM_HeLa_CUDC101_4h_R1 1 DSAYISSSPLGSHQVFDFR 19 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 DS(0.001)AYIS(0.017)S(0.543)S(0.438)PLGSHQVFDFR 104.52 0.00043487 60009000 7562.2 5113.9 4329.9 4666.9 7227.3 5916.7 6361.8 4970.1 6163.7 4666.2 TRUE FALSE FALSE 6675.77038 5271.453198 4563.987491 4857.236354 6694.156478 5803.848805 6607.176757 5535.876094 5909.629677 4638.445235 1.43922587 1.136469858 0.983947694 1.047169064 1.44318972 1.251248751 1.424437807 1.193476653 1.274053994 1 12.17942559 -9.628370409 1.455614445 1.000414571 1.264901979 0 0.174397462 0.470527823 1.795467776 0.119621084 0.027477846 2.35E-10 9.628370409 0.264487407 QQVSWEQEFLVGSS(ph)PGGSGR ddPTM_HeLa_CUDC101_4h_R1 1 QQVSWEQEFLVGSSPGGSGR 20 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 0 QQVSWEQEFLVGS(0.222)S(0.778)PGGSGR 162.44 5.37E-06 18927000 2574.1 2445.4 2482.2 2539.4 2675.7 2372.3 2529.4 1999.5 2657.3 2730.9 TRUE FALSE FALSE 2272.3679 2520.739875 2616.39524 2642.967708 2478.318942 2327.05233 2626.959805 2227.114998 2547.764969 2714.656485 0.83707383 0.928566796 0.963803433 0.973591953 0.912940166 0.857217973 0.96769511 0.820403985 0.93852205 1 11.40655393 -9.628045542 1.458568182 0.999790639 0.901756414 0.128084115 0.054980926 0.412207988 1.580741743 0.038859315 0.008950158 2.35E-10 9.628045542 -0.098034225 DLFSLDSEDPSPAS(ph)PPLR ddPTM_HeLa_CUDC101_4h_R1 4 DLFSLDSEDPSPASPPLR 18 0 H3BTX0;Q9BTK6 H3BTX0 PAGR1 PAXIP1-associated glutamate-rich protein 1 1 0 DLFSLDSEDPSPAS(1)PPLR;DLFSLDSEDPSPAS(1)PPLR;DLFSLDSEDPS(0.001)PAS(0.999)PPLR;DLFSLDSEDPSPAS(1)PPLR ;;; 267.6 1.56E-71 173965200 10947 9178.2 9123.4 8313.3 10440.1 9217.5 9023.1 7694.3 11479.9 10838.8 TRUE FALSE FALSE 9663.809255 9460.969463 9616.638601 8652.352307 9669.954623 9041.691545 9371.12399 8570.188011 11006.69366 10774.33034 0.896928993 0.878102784 0.892550934 0.803052444 0.897499364 0.839188262 0.869763939 0.795426513 1.021566382 1 13.39531058 -9.627519812 0.197562202 1.127307739 0.810469415 0.82295943 0.029499539 2.986555829 0.15600157 0.247347497 0.044337277 2.36E-10 9.627519812 -0.316838323 (ac)MERS(ph)PPQSPGPGK ddPTM_HeLa_CUDC101_4h_R1 1 MERSPPQSPGPGK 13 1 Q86VQ6 Q86VQ6 TXNRD3 Thioredoxin reductase 3 1 0 MERS(1)PPQSPGPGK 61.593 0.0035807 8149700 1209.4 1499 1287.5 1573.2 1780.3 1397.6 1402.6 1410.6 1665.2 1936.1 TRUE FALSE FALSE 1067.635965 1545.182413 1357.106144 1637.361896 1648.970816 1370.943109 1456.698752 1571.177002 1596.559751 1924.583991 0.554735969 0.802865669 0.705142592 0.850761465 0.856793376 0.712332179 0.756890195 0.81637227 0.829560964 1 10.91033092 -9.626878586 1.459988829 0.999274695 0.73132055 0.194190955 0.100095789 0.285766038 1.098934823 0.073600836 0.017003619 2.36E-10 9.626878586 -0.267954145 APS(ph)PEPAAPR ddPTM_HeLa_CUDC101_4h_R1 1 APSPEPAAPR 10 0 P20749 P20749 BCL3 B-cell lymphoma 3 protein 1 0 APS(1)PEPAAPR 133.91 0.0018781 100500000 2293.3 2138.8 2030.7 1942.9 2202.1 2045.1 1856.8 1875 2081 2756.1 TRUE FALSE FALSE 2024.48285 2204.693893 2140.485785 2022.13986 2039.65547 2006.093125 1928.417398 2088.442421 1995.220299 2739.706595 0.738941482 0.804718979 0.781282853 0.738086284 0.744479527 0.732229184 0.703877343 0.762286891 0.728260575 1 11.41980568 -9.626338236 0.456585984 1.102838745 0.737658011 0 0.089558112 0.444907861 0.099327737 0.07867463 0.007447176 2.36E-10 9.626338236 -0.365180734 VLPITVPKS(ph)PAFALK ddPTM_HeLa_CUDC101_4h_R1 2 VLPITVPKSPAFALK 15 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 VLPIT(0.447)VPKS(0.553)PAFALK;VLPIT(0.01)VPKS(0.99)PAFALK ; 75.91 0.015844 48609000 6585.8 8807.4 8476.6 7623.4 14375.6 8757.9 8297.1 4496.7 8441.1 11910.9 TRUE FALSE FALSE 5813.822507 9078.745555 8934.870636 7934.315203 13315.14063 8590.857649 8617.121926 5008.586152 8093.154285 11840.05344 0.49103009 0.766782481 0.754630938 0.670124949 1.124584505 0.725575919 0.727794175 0.42302057 0.683540351 1 13.53138797 -9.626305524 1.458581541 0.999194446 0.692647456 0 0.200792 0.448481327 1.721137246 0.132058759 0.030508853 2.36E-10 9.626305524 -0.30654699 SAPAPK(ac)K(ac)GSK ddPTM_HeLa_CUDC101_4h_R1 2 SAPAPKKGSK 10 2 O60814;P57053;P58876;P62807;Q16778;Q5QNW6;Q5QNW6-2;Q8N257;Q93079;U3KQK0;Q99877;Q99880 O60814;P58876;P62807;Q16778;Q5QNW6;Q8N257;Q93079;U3KQK0;Q99880 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST2H2BF;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BL Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 2-F;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L 0 2 ; SAPAPK(1)K(1)GSK;SAPAPK(1)K(1)GSK 136.5 0.0017079 360020000 4564.6 7253.3 12360.8 18712.8 18555.3 19581.5 19044.3 13820.5 1383.77 1133.66 FALSE TRUE FALSE 4029.544507 7476.765576 13029.06224 19475.98887 17186.51249 19208.01551 19778.84503 15393.76986 1326.730415 1126.91694 3.575724496 6.634708656 11.56168816 17.28254158 15.25091325 17.04474823 17.55128912 13.66007494 1.177309851 1 10.13816547 -6.798333671 1.32650884 2.008916868 16.42864821 0.960155664 1.281684945 0.052423027 0.185119969 0.240358332 0.351875278 1.59E-07 6.798333671 14.41973134 up TGS(ph)ESSQTGTSTTSSR ddPTM_HeLa_CUDC101_4h_R1 4 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 T(0.047)GS(0.318)ES(0.318)S(0.318)QTGTSTTSSR;T(0.002)GS(0.997)ES(0.001)SQTGTSTTSSR;T(0.032)GS(0.947)ES(0.021)SQTGTSTTSSR;T(0.308)GS(0.676)ES(0.015)S(0.001)QTGTSTTSSR ;;; 232.01 3.95E-43 11833100 1002.47 918.01 1143.7 1007.16 863.791 1266.96 1258.17 685.08 765.54 1221.45 TRUE FALSE FALSE 884.9619862 946.2928 1205.531882 1048.236338 800.0708588 1242.794849 1306.698038 763.066738 733.9841172 1214.184761 0.728852819 0.779364748 0.992873507 0.86332523 0.658936666 1.023563208 1.076193739 0.628460151 0.604507766 1 10.24577226 -9.626136368 1.465460631 0.999379666 0.836435997 0 0.189053102 0.643109534 2.495938558 0.100792444 0.023406079 2.37E-10 9.626136368 -0.162943669 ALSSSK(ac)QSSSSR ddPTM_HeLa_CUDC101_4h_R1 1 ALSSSKQSSSSR 12 1 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 1 ALSSSK(1)QSSSSR 229.68 4.82E-76 0 201.41 123.08 57.422 62.039 145.26 0 159.2 241.54 190.16 140.11 FALSE TRUE FALSE 177.8010251 126.8719489 60.52640701 64.56921858 134.5444592 0 165.3403973 269.0359373 182.3215243 139.2766195 1.276603537 0.910935011 0.434576939 0.463604148 0.966023297 0 1.187136778 1.931666192 1.309060523 1 7.121809281 -7.010571285 23.47268085 1.128678948 0.787970789 0.091360445 0.49204184 430.1237301 955058.6103 0.080469435 0.10208072 9.76E-08 7.010571285 -0.340708159 ALSTGEK(ac)GFGYK ddPTM_HeLa_CUDC101_4h_R1 2 ALSTGEKGFGYK 12 1 P62937;F8WE65;C9J5S7 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 1 ; ALSTGEK(1)GFGYK;ALSTGEK(1)GFGYK 208.56 1.31E-15 20257500 5057.1 4671 4896.6 5174.8 5552.1 4869.3 5018.4 5437.3 4806.7 5475.3 FALSE TRUE FALSE 4464.314404 4814.907974 5161.325007 5385.850711 5142.532644 4776.426215 5211.961369 6056.260254 4608.565792 5442.732672 0.820234002 0.884648992 0.948296622 0.989549007 0.944843878 0.877578691 0.957600103 1.112724181 0.846737488 1 12.41011546 -6.569354111 6.28015063 0.910563005 0.968281793 0.228556318 0.071495956 0.378199416 35.6958325 0.013667594 0.019470669 2.70E-07 6.569354111 0.057718789 ALSVGLVK ddPTM_HeLa_CUDC101_4h_R1 1 ALSVGLVK 8 0 J3KNQ3;A0A087WUL9;Q9UNM6;Q9UNM6-2 J3KNQ3 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 0 126.67 0.026281 1043600 1630.7 1104.7 1074 1091.2 1305.2 1261.2 1321.8 1156.3 1409.2 1134.5 FALSE FALSE TRUE 1439.551818 1138.734498 1132.063689 1135.703853 1208.917996 1237.144711 1372.782269 1287.928518 1351.11218 1127.751944 1.276479128 1.009738448 1.00382331 1.007051115 1.071971548 1.097000735 1.217273246 1.142031743 1.198057948 1 10.13923406 -9.821261834 1.86487536 0.999529017 1.131419433 0 0.108088729 0.524703454 3.304404943 0.082251424 0.016926972 1.51E-10 9.821261834 0.131890416 LY(ph)LNLLEMEY(ph)S(ph)GDLK ddPTM_HeLa_CUDC101_4h_R1 1 LYLNLLEMEYSGDLK 15 0 Q86UA1-2;Q86UA1 Q86UA1-2 PRPF39 Pre-mRNA-processing factor 39 3 0 LY(1)LNLLEMEY(1)S(1)GDLK 44.299 0.0032844 0 395.75 240.89 330.63 183.17 450.2 259.37 195.93 396.81 348.48 245.74 TRUE FALSE FALSE 349.3607849 248.3115354 348.5048579 190.6404643 416.9896429 254.4229494 203.4870857 441.9812464 334.1155069 244.2783276 1.430175114 1.016510707 1.426671213 0.78042316 1.707026764 1.041528947 0.833013259 1.809334667 1.367765656 1 7.932382063 -9.625509074 1.447108086 1.000264746 1.260422931 0 0.346984278 0.851203773 3.206991026 0.212088269 0.048665426 2.37E-10 9.625509074 0.260158185 LCIEVTPQS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 LCIEVTPQSK 10 0 D6R9I9;P61221;D6RGF4 D6R9I9 ABCE1 ATP-binding cassette sub-family E member 1 1 0 LCIEVT(0.452)PQS(0.548)K 106.29 0.0097777 51628000 1871.5 1410.1 1151.3 1292.8 1332.9 1523.4 1373.6 1234 1367.7 1097.4 TRUE FALSE FALSE 1652.125607 1453.54351 1213.54276 1345.525972 1234.574623 1494.343683 1426.580212 1374.473572 1311.322827 1090.872616 1.514499111 1.332459435 1.112451392 1.233440048 1.131731244 1.369860845 1.307742253 1.259976235 1.202086117 1 10.09126693 -9.625396227 1.460514939 1.000997789 1.310808706 0.165213882 0.12673606 0.317597972 1.223147428 0.094499132 0.021896247 2.37E-10 9.625396227 0.309810917 ANK(ac)K(ac)KPSMPNVSNDLSQK ddPTM_HeLa_CUDC101_4h_R1 1 ANKKKPSMPNVSNDLSQK 18 3 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 0 2 ANK(0.85)K(0.85)K(0.299)PSMPNVSNDLSQK 123.58 0.0024273 1884200 356.93 725.77 2061.8 2263 2530.5 2343.5 2351.2 2699.1 1.3104 250.57 FALSE TRUE FALSE 315.0912065 748.1301135 2173.267145 2355.294922 2343.830056 2298.801642 2441.886572 3006.354634 1.256384757 249.0795985 1.265022139 3.003578446 8.725191295 9.455992927 9.409964006 9.22918479 9.803639424 12.06985499 0.005044109 1 7.960463049 -6.794863813 2.366798633 1.119827738 9.918627034 0.96177288 0.837538542 0.033824347 0.388778645 0.12669124 0.177467089 1.60E-07 6.794863813 8.798799296 up S(ph)SPPSAGNSPSSLK ddPTM_HeLa_CUDC101_4h_R1 3 SSPPSAGNSPSSLK 14 0 P57682;P57682-2 P57682 KLF3 Krueppel-like factor 3 1 0 S(0.887)S(0.113)PPSAGNSPSSLK;S(0.5)S(0.5)PPS(0.001)AGNSPSSLK;S(0.499)S(0.499)PPS(0.003)AGNSPSSLK ;; 140.39 4.58E-05 36527900 7267.2 6256.5 6681.7 5745.6 5588.9 5716 5618.5 5774.5 6684.3 8721.1 TRUE FALSE FALSE 6415.349832 6449.255349 7042.932913 5979.930403 5176.617982 5606.976824 5835.207427 6431.845739 6408.770325 8669.226509 0.740014098 0.743925117 0.812406148 0.689788229 0.597125704 0.646767831 0.673094355 0.741916909 0.739255148 1 13.08168756 -9.62511921 0.291825589 1.186969911 0.656431722 0.151148849 0.096163545 1.500867448 0.142564565 0.275550714 0.03236483 2.37E-10 9.62511921 -0.53053819 ALTGGIAHLFK(ac)QNK ddPTM_HeLa_CUDC101_4h_R1 1 ALTGGIAHLFKQNK 14 1 E9PEX6;P09622-2;P09622-3;P09622 E9PEX6 DLD "Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial" 0 1 ALTGGIAHLFK(1)QNK 100.22 0.015049 727520 2437.8 685.34 533.01 1021.3 869.59 1086.9 717.32 710.51 312.63 158.27 FALSE TRUE FALSE 2152.044779 706.4545131 561.8261329 1062.953028 805.4420782 1066.169193 744.9872727 791.3915864 299.7432591 157.328603 13.67866198 4.490311994 3.571036176 6.756260516 5.119489163 6.776702857 4.735230965 5.030182505 1.905205114 1 7.297637172 -4.75918814 24.99305309 6.523114599 4.882706163 0 3.435274699 247.5487963 2748067.014 0.652616806 2.227093611 1.74E-05 4.75918814 -1.640408436 ALTQTGGPHVK ddPTM_HeLa_CUDC101_4h_R1 2 ALTQTGGPHVK 11 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 ; ; 88.803 0.024588 13853300 3597.3 3119.5 3058.9 3110.6 3669.9 3554.2 3131.2 3265.7 3192.7 3194.2 FALSE FALSE TRUE 3175.629947 3215.608097 3224.273387 3237.463713 3399.178788 3486.409557 3251.971433 3637.454088 3061.095555 3175.200756 1.00013517 1.012725917 1.015454969 1.01960914 1.070539802 1.098012322 1.024178212 1.145582395 0.964063626 1 11.6326321 -3.224297114 0.327105821 0.995325811 1.327059065 0.697982442 0.028111949 5.112041032 0.231321848 0.008643767 0.7718224 0.000596627 3.224297114 0.331733254 ALTVPELTQQMFDAK ddPTM_HeLa_CUDC101_4h_R1 2 ALTVPELTQQMFDAK 15 0 P68371;P04350;A0A0B4J269;Q13509;Q13509-2 P68371;P04350;A0A0B4J269 TUBB4B;TUBB4A;TUBB3 Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain 0 0 ; ; 183.99 4.94E-10 69295000 5577.3 4628.6 4279.3 4131.8 5008.7 4011.1 4406.8 4333.1 4519 3725.4 FALSE FALSE TRUE 4923.537349 4771.20168 4510.651902 4300.312663 4639.21818 3934.59495 4576.771752 4826.362589 4332.724907 3703.241155 1.329521126 1.288385358 1.218028131 1.161229443 1.252745362 1.062473327 1.23588272 1.303280663 1.169981842 1 11.85457279 -9.461472875 1.200256535 1.0001284 1.236031692 0.230647331 0.088115625 0.282302944 0.728160661 0.054711445 0.013554559 3.46E-10 9.461472875 0.235903292 ALTVPELTQQMFDSK ddPTM_HeLa_CUDC101_4h_R1 2 ALTVPELTQQMFDSK 15 0 Q9BVA1;Q13885 Q9BVA1 TUBB2B;TUBB2A Tubulin beta-2B chain;Tubulin beta-2A chain 0 0 ; ; 139.86 0.002177 36759000 4121.1 3914.1 3206.9 3353.1 3767.9 3400.9 3311.12 3742.9 3715.3 3651.4 FALSE FALSE TRUE 3638.030905 4034.688782 3380.274714 3489.853911 3489.949524 3336.033499 3438.831008 4168.976607 3562.153761 3629.68131 1.002300366 1.111582102 0.931286916 0.961476673 0.961503015 0.919098183 0.947419543 1.148579242 0.981395736 1 11.82562717 ALTVPELTQQVFDAK ddPTM_HeLa_CUDC101_4h_R1 2 ALTVPELTQQVFDAK 15 0 Q5JP53;P07437;Q5ST81 Q5JP53 TUBB Tubulin beta chain 0 0 ; ; 246.3 6.53E-55 21229000 3204.2 2965.8 2480.42 2303.07 2804.8 2679.7 2604.47 2604.18 2952.1 2834.3 FALSE FALSE TRUE 2828.608533 3057.172783 2614.519008 2396.999149 2597.895492 2628.589187 2704.92528 2900.629325 2830.413188 2817.441458 1.003963552 1.085088308 0.927976339 0.85077159 0.922076122 0.932970295 0.960064413 1.029526032 1.004604082 1 11.46016992 -6.695545214 24.99975019 1.008165808 0.933455939 0.422814979 0.047904147 47.96885456 18198.55468 0.007680971 0.010862531 2.02E-07 6.695545214 -0.074709869 ALVADSHPESER ddPTM_HeLa_CUDC101_4h_R1 2 ALVADSHPESER 12 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ; ; 132.86 0.0013622 19490700 8223 6040.1 6873 6251.4 8697.9 7669.9 7272.8 7261 7600.4 7995.7 FALSE FALSE TRUE 7259.112405 6226.188322 7244.57517 6506.359113 8056.273246 7523.609436 7553.314332 8087.56289 7287.108295 7948.141221 0.91330944 0.783351497 0.911480429 0.818601347 1.013604693 0.946587287 0.950324626 1.017541418 0.916831759 1 12.95640179 -3.433531315 1.040090586 0.93434299 1.336632369 0.124833627 0.06929762 17.06544019 4.084833287 0.011770257 11.5450532 0.000368526 3.433531315 0.402289378 ALVATPGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 3 ALVATPGKK 9 1 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 ;; ALVATPGK(1)K;ALVATPGK(1)K;ALVATPGK(1)K 138.1 0.0020601 664740140 22044.35 31558.4 28917.32 33506.1 34025.69 31703.88 31780.87 34548.15 12196.7 9805.69 FALSE TRUE FALSE 19460.34471 32530.6769 30480.67779 34872.62358 31515.68264 31099.18131 33006.6688 38480.97175 11693.94686 9747.36532 1.996472285 3.337381521 3.127068371 3.577646106 3.233251407 3.190521776 3.386214399 3.947833131 1.199703354 1 13.2507966 -7.563619382 0.769492202 1.178404087 3.502262864 0.916895955 0.280215331 0.107380599 0.135697027 0.084826653 0.083201356 2.73E-08 7.563619382 2.323858777 (ac)S(ph)RLSWGYR ddPTM_HeLa_CUDC101_4h_R1 1 SRLSWGYR 8 1 Q8N1Q1 Q8N1Q1 CA13 Carbonic anhydrase 13 1 0 S(0.996)RLS(0.004)WGYR 58.167 0.025685 12609000 230.49 224.82 270.12 212.41 225.87 274.12 184.17 279.17 270.19 281.96 TRUE FALSE FALSE 203.4723116 231.7464377 284.7235043 221.0729979 209.2080201 268.8916177 191.2734986 310.9495844 259.0526538 280.2828894 0.725953382 0.826830486 1.015843332 0.788749532 0.746417381 0.959357948 0.682430166 1.109413368 0.924254258 1 8.130739864 -9.624647005 1.457636659 0.999514123 0.834251686 0.063851411 0.131763919 0.541841344 2.07766714 0.085907606 0.019890837 2.37E-10 9.624647005 -0.165262437 VLPPPAGYVPIRT(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 VLPPPAGYVPIRTPAR 16 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 VLPPPAGYVPIRT(1)PAR;VLPPPAGYVPIRT(1)PAR ; 122.44 0.00062911 149787000 4180.5 2878.6 3022.4 3367.7 3621.8 3824.4 3177.3 2627.3 2674.9 2940.4 TRUE FALSE FALSE 3690.468127 2967.286254 3185.800086 3505.049362 3354.62703 3751.455942 3299.849525 2926.381212 2564.63949 2922.91037 1.262600511 1.015182089 1.08994108 1.199164161 1.147700957 1.283465952 1.128960217 1.001187461 0.877426662 1 11.51318987 -9.624167368 1.44176502 1.000085634 1.159292579 0.355934894 0.098172638 0.436035973 1.629333042 0.06635347 0.015202525 2.38E-10 9.624167368 0.159206945 ALVILAK ddPTM_HeLa_CUDC101_4h_R1 2 ALVILAK 7 0 Q99497;K7ELW0 Q99497 PARK7 Protein deglycase DJ-1 0 0 ; ; 130.84 0.022571 14735400 14293.6 11130.6 9655.5 10920.5 10965.1 9628 10201.9 9403.2 9704.6 5035.2 FALSE FALSE TRUE 12618.12588 11473.52059 10177.50554 11365.88519 10156.22642 9444.361941 10595.3907 10473.62228 9304.57228 5005.250406 2.520977943 2.29229702 2.033365908 2.270792522 2.029114548 1.886890999 2.11685527 2.092527132 1.858962394 1 12.28922653 -9.38938834 1.075191207 0.989573263 2.173976705 0.372959674 0.305252139 0.161512779 0.329346749 0.14607022 0.036108557 4.08E-10 9.38938834 1.184403442 ALVIVMGK ddPTM_HeLa_CUDC101_4h_R1 2 ALVIVMGK 8 0 C9J0J7;G5E9Q6;P35080-2 C9J0J7 PFN2 Profilin;Profilin-2 0 0 ; ; 129.96 0.031426 1307360 3490.8 2292.17 1279.84 2356.15 2296.99 2147.29 1892.31 1614.95 1765.59 642.01 FALSE FALSE TRUE 3081.613716 2362.789041 1349.032022 2452.243981 2127.545624 2106.334021 1965.297031 1798.78938 1692.811633 638.191296 4.828667729 3.702321006 2.113836447 3.842490483 3.333711439 3.300474378 3.079479528 2.818573979 2.652514448 1 9.317845122 -6.240777249 24.55481474 2.887881984 3.268769501 0.044288011 0.960285828 3337.243578 3965969.604 0.223966573 0.371114334 5.74E-07 6.240777249 0.380887517 S(ph)QTSMGMRHRDRPT(ph)T(ph)GNTLK ddPTM_HeLa_CUDC101_4h_R1 1 SQTSMGMRHRDRPTTGNTLK 20 3 S4R3W3;E9PQV6;F6XEV2;A0A0U1RRK1;A0A286YF11;Q9BPX6-5;Q9BPX6-4;Q9BPX6-2;Q9BPX6;Q9BPX6-3 S4R3W3 MICU1 "Calcium uptake protein 1, mitochondrial" 3 0 S(0.341)QT(0.341)S(0.341)MGMRHRDRPT(0.978)T(0.98)GNT(0.019)LK 47.752 0.0033364 0 533.69 323.49 363.68 368.14 299.05 326.53 344.18 376.46 391.04 238.27 TRUE FALSE FALSE 471.1316672 333.4563435 383.3416409 383.1543404 276.9896773 320.3019843 357.4551379 419.3146847 374.9211657 236.8527594 1.989133115 1.407863452 1.618480789 1.61769 1.169459363 1.352325322 1.509187137 1.770360141 1.58292927 1 7.88784667 -9.62331245 1.453012009 1.001568684 1.599275857 0 0.279252106 0.315664637 1.201975548 0.180680126 0.041793741 2.38E-10 9.62331245 0.597707173 ALVLDCHYPEDEVGQEDEAESDIFSIR ddPTM_HeLa_CUDC101_4h_R1 4 ALVLDCHYPEDEVGQEDEAESDIFSIR 27 0 Q07021;I3L3Q7;I3L3B0 Q07021 C1QBP "Complement component 1 Q subcomponent-binding protein, mitochondrial" 0 0 ;;; ;;; 184.34 1.42E-17 113721000 6684.1 5383.3 4984.89 5177.7 6408.5 6152.65 5596.67 5715.74 5965.51 4458.73 FALSE FALSE TRUE 5900.59993 5549.153092 5254.388232 5388.868986 5935.757723 6035.298452 5812.535437 6366.396738 5719.609153 4432.209276 1.331299937 1.25200611 1.185500933 1.215842631 1.339232277 1.361690768 1.311430728 1.436393532 1.290464596 1 12.11381029 -12.45176186 0.235360964 6.29E-12 1.349248526 0.041595745 0.111629644 11.01947985 0.223264495 5.179064106 0.051206329 3.53E-13 12.45176186 1.349248526 VKPPPSPTTEGPS(ph)LQPDLAPEEAAGTQRPK ddPTM_HeLa_CUDC101_4h_R1 1 VKPPPSPTTEGPSLQPDLAPEEAAGTQRPK 30 2 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 VKPPPS(0.076)PT(0.021)T(0.189)EGPS(0.714)LQPDLAPEEAAGTQRPK 83.411 6.08E-07 10818000 2193.1 2317.9 2154.8 2145.5 2455.3 2241.6 2223.2 2415.3 2285.5 2711.5 TRUE FALSE FALSE 1936.028143 2389.311752 2271.295006 2233.002764 2274.177411 2198.845215 2308.949569 2690.247989 2191.290723 2695.371877 0.718278676 0.886449759 0.842664801 0.828458137 0.843734191 0.81578547 0.856634881 0.998099005 0.812982706 1 11.39626862 -9.622830815 1.451128194 0.999581554 0.829194046 0 0.087992271 0.320370215 1.2163857 0.052237303 0.012077078 2.38E-10 9.622830815 -0.170387508 T(ph)GSESSQTGTSTTSSR ddPTM_HeLa_CUDC101_4h_R1 3 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 T(0.561)GS(0.395)ES(0.041)S(0.002)QTGTSTTSSR;T(0.993)GS(0.007)ESSQTGTSTTSSR;T(0.582)GS(0.418)ESSQTGTSTTSSR ;; 186.08 3.77E-10 2536274900 2385.4 3509.6 3498.63 3924.24 3409.86 3822.96 3539.12 2884.07 4204.9 5078.82 TRUE FALSE FALSE 2105.787028 3617.726616 3687.776521 4084.287469 3158.321421 3750.043407 3675.625044 3212.380871 4031.572242 5048.610953 0.417102258 0.716578609 0.730453694 0.808992316 0.625582254 0.742787163 0.728046799 0.636290041 0.798550786 1 12.30167079 -9.622456892 1.451476907 0.9990728 0.646512331 0.294431478 0.119047021 0.271591348 1.031931328 0.091615876 0.021200306 2.39E-10 9.622456892 -0.35256047 EVDEIS(ph)PEDDQR ddPTM_HeLa_CUDC101_4h_R1 1 EVDEISPEDDQR 12 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 EVDEIS(1)PEDDQR 101.72 0.001236 0 528.37 446.52 702.46 452.77 664.15 646.19 624.16 427.39 607.28 695.08 TRUE FALSE FALSE 466.4352696 460.2767519 740.4371124 471.2359176 615.1569777 633.8650024 648.2340603 476.04235 582.2476614 690.9456332 0.675067975 0.666154803 1.071628616 0.682015914 0.890311695 0.917387667 0.938183888 0.688972225 0.842682309 1 9.432428387 -9.622154206 1.463011971 0.999109211 0.803261686 0.033729335 0.139894507 0.496171183 1.921194796 0.093183765 0.021751557 2.39E-10 9.622154206 -0.195847525 TFPLAHS(ph)PQAECEDQLDAQER ddPTM_HeLa_CUDC101_4h_R1 1 TFPLAHSPQAECEDQLDAQER 21 0 A0A1W2PRB5;A0A0J9YVS1;A0A0G2JQF5;A0A3B3IT55;A0A0G2JNB1;A0A0G2JQF4;A0A0G2JNT7;Q7Z3B3;Q7Z3B3-4;Q7Z3B3-2 A0A1W2PRB5 KANSL1 KAT8 regulatory NSL complex subunit 1 1 0 TFPLAHS(1)PQAECEDQLDAQER 104.77 4.74E-05 19180000 1808.1 1472.9 1623.9 1595.2 1463.7 2021 1667.7 1592.4 1862.4 630.61 TRUE FALSE FALSE 1596.157259 1518.278303 1711.692946 1660.259151 1355.725767 1982.452792 1732.023748 1773.672379 1785.631084 626.8591037 2.546277544 2.422040765 2.730586404 2.648536396 2.16272805 3.162517351 2.763019214 2.829459394 2.848536574 1 9.291997401 -9.620975532 0.36540536 0.149177595 2.799127765 0 0.62987496 0.800795947 0.114298827 0.869278521 0.087407006 2.39E-10 9.620975532 2.649950171 ALYDYEGQEHDELSFK ddPTM_HeLa_CUDC101_4h_R1 1 ALYDYEGQEHDELSFK 16 0 A0A0U1RR22;Q9UNF0;Q9UNF0-2;H0Y923 A0A0U1RR22 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 0 0 96.489 0.0052055 5229300 1088.3 945.65 917.6 882.46 1346.2 1079.3 1245 1046.2 1075.6 1201.5 FALSE FALSE TRUE 960.7311238 974.7843556 967.2082316 918.4505331 1246.893508 1058.714151 1293.020067 1165.295179 1031.263313 1194.353425 0.804394331 0.816160724 0.809817439 0.768993929 1.043990399 0.886432884 1.082610926 0.975670313 0.863449036 1 10.2220141 -5.739699429 24.98011228 0.881041487 0.995368386 0.427660512 0.080251362 281.6981743 323681.2256 0.014793153 0.029565273 1.82E-06 5.739699429 0.114326899 ALYEAGERR ddPTM_HeLa_CUDC101_4h_R1 2 ALYEAGERR 9 1 P04083 P04083 ANXA1 Annexin A1 0 0 ; ; 113.26 0.0090017 21347600 5659.7 4353.7 3614.1 4106.5 7118.8 5466.5 5539.4 5088.4 5031.9 3883.5 FALSE FALSE TRUE 4996.278546 4487.832337 3809.489178 4273.98082 6593.660307 5362.23562 5753.056514 5667.642888 4824.482952 3860.400769 1.294238304 1.162530163 0.986811838 1.107133967 1.708024814 1.389035994 1.490274419 1.468148834 1.249736294 1 11.91453491 -5.779995686 24.96917833 1.12948036 1.503268752 0.717314535 0.116916352 111.3253294 149798.0731 0.020265643 0.036782074 1.66E-06 5.779995686 0.373788392 ALYETELADARR ddPTM_HeLa_CUDC101_4h_R1 2 ALYETELADARR 12 1 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 0 0 ; ; 192.5 1.14E-11 26044000 6983.1 5896.6 5839.3 6273.8 7328.3 6816.4 6738.4 7165.6 6525.1 4826 FALSE FALSE TRUE 6164.551604 6078.267257 6154.990221 6529.672682 6787.705909 6686.388527 6998.302345 7981.30294 6256.132616 4797.294737 1.285005809 1.267019766 1.283012731 1.361115595 1.414902832 1.393783141 1.458801831 1.663709106 1.304095945 1 12.22800536 -1 0.042534859 1.78E-13 3.611981857 0.588564671 0.10267698 111.7873833 0.365100081 8.272659598 28.49368811 0.1 1 3.611981857 YLSVPPSPNIS(ph)TSESRSPPEGDTTLFLSR ddPTM_HeLa_CUDC101_4h_R1 1 YLSVPPSPNISTSESRSPPEGDTTLFLSR 29 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 YLSVPPS(0.078)PNIS(0.284)T(0.284)S(0.207)ES(0.067)RS(0.067)PPEGDT(0.006)T(0.006)LFLSR 54.465 0.00453 37771000 2309.6 2997.7 2884.5 2420.6 3268.5 2617.3 2474.9 2693.3 3291 3602.7 TRUE FALSE FALSE 2038.872189 3090.055584 3040.444795 2519.322531 3027.389267 2567.379363 2570.357722 2999.894385 3155.343587 3581.27098 0.569315252 0.862837691 0.848984847 0.703471629 0.845339346 0.716890561 0.71772221 0.837661937 0.881068091 1 11.80625597 -9.620734345 1.442930418 0.999549206 0.738068677 0.311225212 0.095558986 0.290506824 1.089208249 0.072469409 0.016717415 2.39E-10 9.620734345 -0.261480529 QLDAGAQHS(ph)T(ph)MT(ph)S(ph)T(ph)LR ddPTM_HeLa_CUDC101_4h_R1 1 QLDAGAQHSTMTSTLR 16 0 Q96M89-2;Q96M89;H7C005 Q96M89-2 CCDC138 Coiled-coil domain-containing protein 138 5 0 QLDAGAQHS(1)T(1)MT(1)S(1)T(1)LR 52.42 0.027093 36321000 0 0 122.65 139.91 143.22 59.219 122.89 0 122.32 172.75 TRUE FALSE FALSE 0 0 129.28083 145.6161345 132.6549459 58.08949624 127.6299085 0 117.2779178 171.7224753 0 0 0.752847464 0.847973652 0.77249612 0.338275442 0.743233571 0 0.68295031 1 7.423935064 -9.620602385 1.461858459 0.997105863 0.393619719 0.162435672 0.339503149 0.436556874 1.688282478 0.25233016 0.059010709 2.40E-10 9.620602385 -0.603486145 NFPAHIFEPAVLLT(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 NFPAHIFEPAVLLTPPR 17 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 0 NFPAHIFEPAVLLT(1)PPR 70.917 0.034319 7776300 1232.9 1531.4 1210.6 1414.4 1761.2 1820.6 1462.9 1040.4 1565.7 1911.9 TRUE FALSE FALSE 1088.381331 1578.580619 1276.048698 1472.085346 1631.279785 1785.875088 1519.324543 1158.834931 1501.161183 1900.527934 0.572673157 0.830601114 0.671418018 0.77456654 0.858329812 0.93967316 0.799422369 0.609743698 0.789865361 1 10.89218451 -9.618852271 1.445147126 0.999318045 0.739812785 0.065845238 0.124767924 0.34951502 1.316275471 0.086470399 0.020044261 2.41E-10 9.618852271 -0.25950526 AMADPEVQQIMSDPAMR ddPTM_HeLa_CUDC101_4h_R1 1 AMADPEVQQIMSDPAMR 17 0 P31948;P31948-2;P31948-3;H0YGI8 P31948 STIP1 Stress-induced-phosphoprotein 1 0 0 90.05 0.034051 7019500 1746.1 1654.8 1506.2 1680.8 1697.2 1568.7 1508.5 1736.5 1726.8 1657 FALSE FALSE TRUE 1541.424805 1705.782427 1587.629728 1749.350289 1572.000937 1538.779661 1566.68335 1934.176141 1655.620573 1647.14409 0.935816614 1.035600004 0.963868151 1.062050551 0.954379733 0.934210717 0.951151365 1.174260438 1.00514617 1 10.68575105 -7.259567073 24.98420354 0.969691179 1.003547053 0.025014599 0.069613903 425.9256563 5683598.418 0.011365801 0.013521921 5.50E-08 7.259567073 0.033855873 TSQCSSPSLSASPGSPT(ph)RPQIR ddPTM_HeLa_CUDC101_4h_R1 3 TSQCSSPSLSASPGSPTRPQIR 22 1 P37275-3;P37275-4;P37275-5;P37275;P37275-2;H0YMD3;H0YND9 P37275-3 ZEB1 Zinc finger E-box-binding homeobox 1 1 0 TSQCSSPSLSASPGS(0.372)PT(0.628)RPQIR;TSQCSSPSLSASPGS(0.01)PT(0.99)RPQIR;TSQCSSPSLSAS(0.001)PGS(0.427)PT(0.572)RPQIR ;; 118.23 9.62E-07 85470000 1920.94 1759.18 1417.64 1532.32 2150.9 1734.8 1509.82 1687.56 2344.81 1374.71 TRUE FALSE FALSE 1695.770325 1813.378251 1494.281907 1594.814633 1992.232392 1701.71158 1568.054263 1879.665009 2248.155939 1366.533164 1.240928775 1.326991762 1.093483822 1.16705154 1.457873431 1.24527646 1.147468868 1.375499006 1.645152858 1 10.41630476 -9.618034607 0.391501456 0.87832953 1.270896036 0 0.228713761 2.132944846 0.348771194 0.361168211 0.035425763 2.41E-10 9.618034607 0.392566506 AMDSDWFAENYMGR ddPTM_HeLa_CUDC101_4h_R1 1 AMDSDWFAENYMGR 14 0 B5MD38;F5GZQ3;P55084-2;P55084 B5MD38 HADHB "Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase" 0 0 110.08 0.019696 3206600 897.26 518.51 385.35 655.84 837.02 555.72 646.99 509.73 493.48 722.83 FALSE FALSE TRUE 792.084543 534.4846785 406.1831866 682.58799 775.2747022 545.1205669 671.944621 567.7556028 473.1385455 718.530575 1.102367207 0.743857947 0.565297011 0.949977654 1.07897246 0.758660224 0.935164966 0.790162065 0.658480741 1 9.488905738 -7.267946267 24.76614844 1.048340072 0.836705741 0 0.18138488 388.2266045 1477643.726 0.023671512 0.027416872 5.40E-08 7.267946267 -0.211634331 ILLVDS(ph)PGMGNADDEQQEEGTSSK ddPTM_HeLa_CUDC101_4h_R1 4 ILLVDSPGMGNADDEQQEEGTSSK 24 0 Q9UKN8 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 1 0 ILLVDS(1)PGMGNADDEQQEEGTSSK;ILLVDS(1)PGMGNADDEQQEEGTSSK;ILLVDS(1)PGMGNADDEQQEEGTSSK;ILLVDS(1)PGMGNADDEQQEEGTSSK ;;; 199.43 8.60E-21 78507000 22965.4 18837.2 16290 17312 20216.8 21042.4 18535.3 16258.8 16924.6 17444.8 TRUE FALSE FALSE 20273.43063 19417.5518 17170.68667 18018.05819 18725.44694 20641.05128 19250.21273 18109.63607 16226.96082 17341.03755 1.169101362 1.119745675 0.990176431 1.03904153 1.079834288 1.190300823 1.110095787 1.044322522 0.935754898 1 14.0819026 -9.61769401 1.445691001 1.000311607 1.103055962 0.359910829 0.061628664 0.457876957 1.726738831 0.044822744 0.010415022 2.41E-10 9.61769401 0.102744355 AMEAVAAQGK ddPTM_HeLa_CUDC101_4h_R1 2 AMEAVAAQGK 10 0 P18669;P15259 P18669 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 0 0 ; ; 121.09 0.022293 20223900 4123.7 3615.1 2656.4 3032.3 3332.9 3050.8 2788.7 2781.7 2828.8 2721.6 FALSE FALSE TRUE 3640.326137 3726.476946 2800.013019 3155.970301 3087.038607 2992.611073 2896.261093 3098.357484 2712.195667 2705.411802 1.345571914 1.377415794 1.0349674 1.166539711 1.141060523 1.106157322 1.070543527 1.145244314 1.002507516 1 11.40163249 AMEEK(ac)VK ddPTM_HeLa_CUDC101_4h_R1 1 AMEEKVK 7 1 A0A1W2PPA8;D6RJ01;D6RAK6;D3DNK8;J3KP02 A0A1W2PPA8 LEKR1 0 1 AMEEK(1)VK 89.298 0.03344 1814000 2361.2 1701.1 1830.1 1678.6 1456.6 1431.8 1410.5 1416.7 1792.3 1926.2 FALSE TRUE FALSE 2084.423715 1753.508875 1929.040742 1747.060564 1349.14952 1404.490801 1464.903457 1577.971402 1718.420635 1914.742877 1.088618081 0.915793392 1.007467251 0.912425676 0.704611327 0.733514049 0.765065365 0.824116606 0.897468092 1 10.90293496 -6.026517622 2.465076836 1.03014839 0.755561135 0.687438754 0.067348657 0.086137208 1.04389576 0.009121696 0.017052653 9.41E-07 6.026517622 -0.274587255 AMELLK(ac)VSK ddPTM_HeLa_CUDC101_4h_R1 1 AMELLKVSK 9 1 Q9Y3U8;J3QSB5 Q9Y3U8 RPL36 60S ribosomal protein L36 0 1 AMELLK(1)VSK 96.89 0.015724 163980 0 0 0 0 68.557 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 63.49968669 0 0 0 0 0 0 AMEVDERPTEQYSDIGGLDK ddPTM_HeLa_CUDC101_4h_R1 2 AMEVDERPTEQYSDIGGLDK 20 1 E9PM69;P17980;E9PMD8;E9PN50;R4GNH3 E9PM69;E9PN50 PSMC3 26S protease regulatory subunit 6A 0 0 ; ; 123 2.85E-05 37172000 3670.6 3650.1 3209.5 3461.9 4070.8 3659 3132.3 3264.4 3653.1 3257.8 FALSE FALSE TRUE 3240.337832 3762.555255 3383.015278 3603.091246 3770.505194 3589.210671 3253.11386 3636.006101 3502.517672 3238.422461 1.000591452 1.161848184 1.044649152 1.112606922 1.164303064 1.108320707 1.004536591 1.122770776 1.081550574 1 11.66107549 -7.288453613 23.76788896 1.000279282 1.099673944 0.259763845 0.05244244 227.119081 199825.1298 0.00758191 0.008671896 5.15E-08 7.288453613 0.099394662 SLDS(ph)DES(ph)EDEEDDYQQKR ddPTM_HeLa_CUDC101_4h_R1 1 SLDSDESEDEEDDYQQKR 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 0 S(0.051)LDS(0.948)DES(0.988)EDEEDDY(0.012)QQKR 86.189 0.0035368 137060000 4448.6 3179.1 3604.7 3043.1 3957.2 3903.9 3359.6 3768.2 4084.1 3320.9 TRUE FALSE FALSE 3927.141852 3277.044303 3799.580986 3167.210771 3665.28524 3829.439612 3489.180897 4197.156656 3915.751669 3301.147139 1.189629449 0.992698648 1.150988073 0.959427326 1.110306534 1.160032998 1.056960126 1.271423684 1.186179078 1 11.68875173 -9.617668745 1.427716814 1.000012716 1.115910844 0 0.104216215 0.544092644 1.991743818 0.059846792 0.013727493 2.41E-10 9.617668745 0.115898128 AMGEQLLPGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AMGEQLLPGKK 11 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 0 1 ; AMGEQLLPGK(1)K;AMGEQLLPGK(1)K 179.67 5.81E-05 2167800 2242.88 2007.29 2176.55 2121.13 2934.5 2592.88 2813.4 2800 2230.27 1740.83 FALSE TRUE FALSE 1979.973006 2069.132226 2294.220877 2207.63885 2718.027781 2543.425134 2921.91378 3118.740682 2138.337327 1730.475466 1.144178606 1.195701567 1.325774865 1.275741201 1.570682645 1.46978399 1.688503442 1.802244957 1.235693524 1 10.75695277 -3.082029019 0.225385173 0.965945363 3.150395152 0.856515602 0.091669373 2.497686014 0.067811966 0.042028206 1.664478809 0.000827887 3.082029019 2.184449789 HRHSPT(ph)GPPGFPR ddPTM_HeLa_CUDC101_4h_R1 1 HRHSPTGPPGFPR 13 1 P98175-5;P98175-2;P98175 P98175-5 RBM10 RNA-binding protein 10 1 0 HRHS(0.234)PT(0.766)GPPGFPR 68.283 0.032712 41082000 1652.9 1675 2074.9 1912.3 2746.7 1834.1 1888.6 1286.8 2286.7 2476.5 TRUE FALSE FALSE 1459.149568 1726.604765 2187.07537 1990.29186 2544.081413 1799.117598 1961.443935 1433.284111 2192.441258 2461.769668 0.592723839 0.701367308 0.888415922 0.808480129 1.033436006 0.73082288 0.796761761 0.582216984 0.89059561 1 11.26548007 -9.61733629 1.448708953 0.999100504 0.751856644 0.211450361 0.130341454 0.412297355 1.562790868 0.097164795 0.022639867 2.41E-10 9.61733629 -0.24724386 TSSSSSFSDK(ac)KPAK ddPTM_HeLa_CUDC101_4h_R1 1 TSSSSSFSDKKPAK 14 2 Q03111 Q03111 MLLT1 Protein ENL 0 1 TSSSSSFSDK(0.96)K(0.04)PAK 113.52 0.010091 3196900 1945.6 2361.1 2647.5 2609.1 3396.8 3191.3 3083.8 3124.5 1185.6 1574.8 FALSE TRUE FALSE 1717.539717 2433.842692 2790.631858 2715.510375 3146.224831 3130.43127 3202.743199 3480.18045 1136.729066 1565.43302 1.097165893 1.554740868 1.782658104 1.734670434 2.00981121 1.999722269 2.045915193 2.223142355 0.726143535 1 10.61234607 -6.794791618 0.795720328 1.007051325 2.086437701 0.929137279 0.128821778 0.077064036 0.098208703 0.020942384 0.033541079 1.60E-07 6.794791618 1.079386376 up FSLPS(ph)VDGQK ddPTM_HeLa_CUDC101_4h_R1 2 FSLPSVDGQK 10 0 P31785-2;H0Y8J6;D6RDW9;A0A2R8Y437;A0A2R8Y833;A0A2R8Y4F3;A0A2R8YE73;P31785 P31785-2 IL2RG Cytokine receptor common subunit gamma 1 0 FSLPS(1)VDGQK;FSLPS(1)VDGQK ; 106.36 0.009753 65089000 5710.2 3731.8 2700.9 3831.1 4310.7 4385.8 3892.6 3313.3 2881.3 2637.5 TRUE FALSE FALSE 5040.859012 3846.772335 2846.918824 3987.348817 3992.708249 4302.148172 4042.738886 3690.472679 2762.531594 2621.812033 1.922662246 1.467218964 1.085859241 1.520837027 1.522881198 1.640906411 1.541963663 1.407603838 1.053672636 1 11.35634854 -9.615678587 1.43793141 1.001322375 1.56393105 0.47113327 0.200694146 0.311854155 1.162101167 0.166679473 0.038649185 2.42E-10 9.615678587 0.562608675 SDKNQQGFS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 SDKNQQGFSPK 11 1 C9JKA9;Q9NS87-2;Q9NS87;Q9NS87-4;D6RCT7 C9JKA9 KIF15 Kinesin-like protein KIF15;Kinesin-like protein 1 0 SDKNQQGFS(1)PK;SDKNQQGFS(1)PK;SDKNQQGFS(1)PK ;; 113.54 0.0033566 283129000 20891.7 17834.3 21131.2 21130.5 20901.1 19792 19120.5 17196.5 22012.9 21840.6 TRUE FALSE FALSE 18442.8066 18383.75364 22273.61659 21992.29312 19359.26749 19414.50058 19857.98409 19154.08005 21105.51894 21710.69114 0.8494804 0.846760406 1.025928491 1.01297066 0.891692824 0.894236874 0.914663838 0.882241838 0.972125614 1 14.40611803 -9.615118836 1.449588261 0.999595764 0.908140395 0.183551395 0.05815678 0.510662474 1.940186793 0.044462497 0.010406127 2.43E-10 9.615118836 -0.091455369 GGPS(ph)LCS(ph)S(ph)QVKK ddPTM_HeLa_CUDC101_4h_R1 1 GGPSLCSSQVKK 12 1 P27987-2;P27987 P27987-2 ITPKB Inositol-trisphosphate 3-kinase B 3 0 GGPS(1)LCS(1)S(1)QVKK 61.691 0.037678 1488200 335.99 502.38 570.53 363.83 479.25 495.46 375.35 229.49 628.47 597.24 TRUE FALSE FALSE 296.6057615 517.8577323 601.3745776 378.66856 443.8966823 486.009926 389.8273752 255.614214 602.5642006 593.6875899 0.499599059 0.87227313 1.012947866 0.637824618 0.747694056 0.818629081 0.656620387 0.430553406 1.014951653 1 9.213560146 -9.614854469 1.426585579 0.999777208 0.693365084 0.343778814 0.162803897 0.429272055 1.570336876 0.124585528 0.02869337 2.43E-10 9.614854469 -0.306412124 AMPEDAK(ac)GQVK ddPTM_HeLa_CUDC101_4h_R1 2 AMPEDAKGQVK 11 1 A8MW92;A8MUE8;A8MW92-4 A8MW92 PHF20L1 PHD finger protein 20-like protein 1 0 1 ; AMPEDAK(1)GQVK;AMPEDAK(1)GQVK 99.013 0.012665 6694300 3556.3 3737.5 3478.3 3216.3 3140.2 2965.9 3108.2 3385.6 3327.3 4676.4 FALSE TRUE FALSE 3139.435905 3852.647945 3666.347419 3347.474616 2908.553702 2909.330399 3228.084315 3771.003019 3190.147286 4648.584565 0.67535308 0.828778716 0.788701887 0.720106211 0.625685875 0.625852958 0.694423059 0.811215321 0.686262074 1 12.18257579 -9.62570586 0.553072231 1.092855125 0.708311273 0 0.119786582 0.807500568 0.276192819 0.173009976 0.017043468 2.37E-10 9.62570586 -0.384543851 AMQDAEVSK ddPTM_HeLa_CUDC101_4h_R1 1 AMQDAEVSK 9 0 P38646;H0YBG6 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 0 132.01 0.014302 14622000 2373.9 1681.2 1563.5 1937.1 2185.9 1925.3 1698.5 1284.1 1764.5 1884.6 FALSE FALSE TRUE 2095.635041 1732.995779 1648.027539 2016.103311 2024.650512 1888.57811 1764.011714 1430.276753 1691.766563 1873.390315 1.118632366 0.925058577 0.879703245 1.076178997 1.080741421 1.008107117 0.941614622 0.763469706 0.903050768 1 10.8714358 -4.279668548 1.720248012 1.036624733 0.6753955 0.369957801 0.08175881 0.561370672 1.65266901 0.011621519 0.328089914 5.25E-05 4.279668548 -0.361229233 ENS(ph)PAVS(ph)PTTNSTAPFGLKPR ddPTM_HeLa_CUDC101_4h_R1 1 ENSPAVSPTTNSTAPFGLKPR 21 1 Q9Y2L9-2;Q9Y2L9;Q9Y2L9-3 Q9Y2L9-2 LRCH1 Leucine-rich repeat and calponin homology domain-containing protein 1 2 0 ENS(0.996)PAVS(1)PT(0.004)TNSTAPFGLKPR 117.21 4.86E-06 11452000 1552 1505 1659.2 1297.5 1623.2 1758.9 1541.6 1366.4 1613 1784.9 TRUE FALSE FALSE 1370.076913 1551.367266 1748.901371 1350.417658 1503.45977 1725.351913 1601.060028 1521.945453 1546.511457 1774.283335 0.772186091 0.874362755 0.985694526 0.761105981 0.847361715 0.972421867 0.902369986 0.857780391 0.871625984 1 10.7930207 -9.614560247 1.437181961 0.999645709 0.860614396 0 0.079250917 0.397837584 1.48136721 0.052501384 0.012190834 2.43E-10 9.614560247 -0.139031313 RPES(ph)PPSILTPPVVPTADK ddPTM_HeLa_CUDC101_4h_R1 2 RPESPPSILTPPVVPTADK 19 1 P55198;Q6P2C6 P55198 MLLT6 Protein AF-17 1 0 RPES(0.912)PPS(0.07)ILT(0.018)PPVVPTADK;RPES(0.358)PPS(0.358)ILT(0.283)PPVVPTADK ; 97.352 0.0010438 46000000 5594.6 4260.6 4833.3 4926.9 4688.3 4712.7 4044.9 4327.4 5134.2 6027.1 TRUE FALSE FALSE 4938.809469 4391.864036 5094.602818 5127.840278 4342.453449 4622.813099 4200.913148 4820.013724 4922.566103 5991.250541 0.824336995 0.733046299 0.850340473 0.855888139 0.724799175 0.771594022 0.701174674 0.80450879 0.821625814 1 12.54864145 -9.613890086 0.271187594 1.147950155 0.743045111 0.175371179 0.074156533 2.024110787 0.171208725 0.268605933 0.03421873 2.43E-10 9.613890086 -0.404905044 SAPAPK(ac)KGSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 SAPAPKKGSKK 11 3 O60814;P57053;P58876;P62807;Q16778;Q5QNW6;Q5QNW6-2;Q8N257;Q93079;U3KQK0;Q99877;Q99880 O60814;P58876;P62807;Q16778;Q5QNW6;Q8N257;Q93079;U3KQK0;Q99880 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST2H2BF;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BL Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 2-F;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L 0 2 SAPAPK(0.844)K(0.163)GSK(0.993)K 92.856 0.0051487 0 2486.1 4101 7075.2 9126.3 14457 8705.8 10020 8003.9 2001.2 757.31 FALSE TRUE FALSE 2194.683127 4227.346949 7457.706713 9498.509961 13390.53591 8539.75137 10406.47476 8915.031623 1918.709689 752.8054864 2.915338911 5.615457147 9.906552021 12.61748238 17.78751106 11.34390161 13.82359048 11.84241053 2.548745624 1 9.556133332 -6.789789018 1.391737822 1.768272744 13.71176765 0.898653595 1.69064147 0.077861188 0.303625568 0.302110192 0.441754276 1.62E-07 6.789789018 11.94349491 up KLNSSSSSSSNSSNEREDFDS(ph)TSSSSSTPPLQPR ddPTM_HeLa_CUDC101_4h_R1 1 KLNSSSSSSSNSSNEREDFDSTSSSSSTPPLQPR 34 2 A0A669KAX4;Q13620-1;Q13620;A0A669KAU9;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 1 0 KLNSSSSSSSNS(0.002)S(0.002)NEREDFDS(0.124)T(0.124)S(0.124)S(0.124)S(0.124)S(0.124)S(0.124)T(0.124)PPLQPR 49.394 0.0070758 31548000 803.74 880.29 1076.2 899.26 1045.6 803.96 749.01 858.45 1174.3 1141.3 TRUE FALSE FALSE 709.5268156 907.4106915 1134.382627 935.9357097 968.4681711 788.6258025 777.8995666 956.172478 1125.894857 1134.511497 0.625402931 0.79982503 0.99988641 0.824968026 0.853643329 0.695123676 0.685669179 0.842805455 0.992404978 1 10.14785551 -9.613377377 1.433588457 0.999472144 0.770454146 0.383486783 0.101358545 0.374017411 1.385096126 0.081181678 0.018840087 2.44E-10 9.613377377 -0.229017998 PEPTK(ac)SAPAPK(ac)K(ac)GSK ddPTM_HeLa_CUDC101_4h_R1 2 PEPTKSAPAPKKGSK 15 3 P58876 P58876 HIST1H2BD Histone H2B type 1-D 0 3 ; PEPTK(1)SAPAPK(1)K(1)GSK;PEPTK(1)SAPAPK(1)K(1)GSK 235.71 8.49E-44 98002000 4830.3 10599.7 18746.8 28569 28730 28166 28576 23053.2 354.42 1650.62 FALSE TRUE FALSE 4264.099556 10926.26419 19760.30871 29734.16731 26610.64514 27628.78048 29678.18589 25677.4831 339.8106576 1640.802039 2.598789772 6.659099596 12.04307908 18.12172742 16.21807172 16.83858249 18.0876091 15.64934861 0.207100338 1 10.68018547 -6.786255541 1.503119471 1.631657357 17.12336386 0.978856556 1.018085049 0.031259747 0.142837689 0.163296383 0.237299763 1.64E-07 6.786255541 15.49170651 up GSRPPLILQSQSLPCS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 2 GSRPPLILQSQSLPCSSPR 19 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 GSRPPLILQSQSLPCS(0.839)S(0.161)PR;GSRPPLILQS(0.001)QS(0.008)LPCS(0.951)S(0.04)PR ; 148.19 0.00022469 64360000 4243.8 2950.59 3198 3071.7 3308.5 3345.4 3184.1 3140 3443.33 2755.31 TRUE FALSE FALSE 3746.348197 3041.494181 3370.893553 3196.977203 3064.438546 3281.592069 3306.911804 3497.444908 3301.39448 2738.921294 1.367818858 1.110471552 1.230737649 1.16723953 1.118848706 1.19813303 1.207377449 1.276942465 1.205363034 1 11.41939209 -9.612133139 1.427763295 1.000383787 1.225839338 0 0.094867064 0.280745485 1.030204954 0.059866776 0.013864805 2.44E-10 9.612133139 0.225455551 GASPLGPGSAAGSGAAAS(ph)GGLGLGLGGR ddPTM_HeLa_CUDC101_4h_R1 1 GASPLGPGSAAGSGAAASGGLGLGLGGR 28 0 B4E1M0;E9PPE2;A0A6I8PS01;Q6P1R3-3;Q6P1R3 B4E1M0 MSANTD2 Myb/SANT-like DNA-binding domain-containing protein 2 1 0 GAS(0.184)PLGPGS(0.201)AAGS(0.254)GAAAS(0.361)GGLGLGLGGR 74.783 6.74E-05 0 368.16 504.12 431.97 464.68 456.63 360.29 355.17 397.64 485.29 549.38 TRUE FALSE FALSE 325.0048429 519.6513397 455.3236048 483.6316589 422.9453146 353.4180685 368.8690259 442.9057303 465.2861408 546.1122633 0.595124601 0.951546732 0.833754587 0.885590182 0.77446588 0.647152778 0.675445418 0.811015903 0.851997239 1 9.093053744 -9.610414912 1.416138122 0.999932332 0.750575948 0.171899209 0.113546206 0.357929349 1.289052269 0.084111731 0.019372857 2.45E-10 9.610414912 -0.249356384 AQAVSEEEEEEEGKSSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 AQAVSEEEEEEEGKSSSPK 19 1 Q9GZR7-2;Q9GZR7;G3V529 Q9GZR7-2 DDX24 ATP-dependent RNA helicase DDX24 1 0 AQAVSEEEEEEEGKS(0.007)S(0.187)S(0.806)PK;AQAVSEEEEEEEGKS(0.02)S(0.334)S(0.646)PK ; 95.742 0.00084277 185210000 3781.7 4585.5 4281.5 4014.9 4564.7 4556.3 3466.3 4788 3970.4 5511.7 TRUE FALSE FALSE 3338.414859 4726.77382 4512.970841 4178.644976 4227.971175 4469.396169 3599.996352 5333.046566 3806.738431 5478.916163 0.609320303 0.862720596 0.823697736 0.762677298 0.77168021 0.815744581 0.657063595 0.973376195 0.694797715 1 12.41967481 -9.608852418 1.422429814 0.999576168 0.759277482 0 0.13535813 0.317883918 1.157738425 0.072019018 0.016708878 2.46E-10 9.608852418 -0.240298686 GTVIIIANHGDR ddPTM_HeLa_CUDC101_4h_R1 1 GTVIIIANHGDR 12 0 A0A087WYS1;E7EUC7;Q16851-2;Q16851 A0A087WYS1 UGP2 UTP--glucose-1-phosphate uridylyltransferase 0 0 86.288 0.017365 738840 2341.8 3401.3 4426.1 6355.7 6876.7 6572.7 6767.1 6889.8 863.25 709.78 FALSE FALSE TRUE 2067.297754 3506.090021 4665.388354 6614.912918 6369.419541 6447.336698 7028.109314 7674.106982 827.6664696 705.558197 2.930017343 4.969242844 6.612336692 9.375432028 9.027489962 9.137923315 9.961062523 10.87664634 1.173066195 1 9.462621276 -6.785204393 0.722412125 1.446669945 10.26130478 0.979028163 0.515016608 0.063894431 0.067801807 0.135909974 0.224258917 1.64E-07 6.785204393 8.814634831 up LECS(ph)GAIS(ph)AHCNLCLPDLS(ph)DSPAST(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 LECSGAISAHCNLCLPDLSDSPASTSR 27 0 A0A096LPI5 A0A096LPI5 LOC100507462 4 0 LECS(0.994)GAIS(0.99)AHCNLCLPDLS(0.818)DS(0.188)PAS(0.138)T(0.436)S(0.436)R 43.38 0.023601 7641000 1062.8 683.12 588.6 505.39 971.85 689.53 785.52 762.23 747.41 508.05 TRUE FALSE FALSE 938.2201951 704.1661175 620.4214964 526.0019887 900.1585617 676.3783641 815.8177695 848.9991822 716.6014435 505.028096 1.857758415 1.394310778 1.228489071 1.04153015 1.782393037 1.339288585 1.615390858 1.681092971 1.418933816 1 8.980219841 -9.608730325 1.423297096 1.00101866 1.528515076 0.063637905 0.272024747 0.377150696 1.375651152 0.187590872 0.043558868 2.46E-10 9.608730325 0.527496416 LSGFS(ph)FK ddPTM_HeLa_CUDC101_4h_R1 2 LSGFSFK 7 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 LSGFS(1)FK;LS(0.007)GFS(0.993)FK ; 101.46 0.020216 1392580000 25615.7 19627.6 17675.3 18411.7 16684.3 19446.7 20823.7 19085.8 16557.3 16002.9 TRUE FALSE FALSE 22613.06648 20232.30309 18630.88018 19162.60871 15453.53243 19075.7866 21626.87708 21258.45032 15874.80109 15907.71404 1.421515777 1.27185484 1.171185259 1.204611087 0.971448971 1.199153225 1.359521364 1.336361106 0.997931007 1 13.95743891 -9.607911199 1.430244915 1.000855869 1.25958733 0.394843337 0.11842571 0.391373865 1.444624049 0.095577406 0.022336373 2.47E-10 9.607911199 0.258731461 LGAGGGSPEKSPS(ph)AQELK ddPTM_HeLa_CUDC101_4h_R1 2 LGAGGGSPEKSPSAQELK 18 1 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 0 LGAGGGSPEKS(0.006)PS(0.994)AQELK;LGAGGGSPEKS(0.309)PS(0.691)AQELK ; 87.647 0.0034497 51926000 4973.1 5103.6 4924.8 4718.8 5240.5 5113.4 4599.2 5336 5079.8 5868.2 TRUE FALSE FALSE 4390.160757 5260.835867 5191.049585 4911.25306 4853.918756 5015.870415 4776.592685 5943.428671 4870.408494 5833.295685 0.752603844 0.901863398 0.889899958 0.84193453 0.832105728 0.859869049 0.818849745 1.018880062 0.834932559 1 12.51009549 -9.60780289 1.422380989 0.999687649 0.847432858 0 0.083237469 0.338840271 1.2345013 0.048608075 0.01129734 2.47E-10 9.60780289 -0.152254791 T(ph)DSYSAGQSVEILDGVELGEPAHKK ddPTM_HeLa_CUDC101_4h_R1 1 TDSYSAGQSVEILDGVELGEPAHKK 25 1 B1AKQ2;B1AKP8;P42345 B1AKQ2 MTOR Serine/threonine-protein kinase mTOR 1 0 T(0.672)DS(0.112)Y(0.03)S(0.037)AGQS(0.15)VEILDGVELGEPAHKK 72.99 0.00033132 18588000 5029.7 2862.6 3124.5 3819.2 3817.5 4300.8 4090 3873.3 3076.6 3098.1 TRUE FALSE FALSE 4440.126191 2950.793313 3293.419921 3974.963484 3535.890631 4218.769406 4247.75267 4314.220816 2949.781246 3079.672363 1.44175278 0.958151701 1.069405941 1.29070986 1.148138572 1.369876048 1.3792872 1.400870062 0.957823073 1 11.58856116 -9.606706704 1.397146939 0.999483414 1.273867249 0.346088998 0.150174003 0.455280705 1.590182398 0.116957458 0.026733467 2.47E-10 9.606706704 0.274383836 S(ph)PGKAEAESDALPDDTVIESEALPSDIAAEAR ddPTM_HeLa_CUDC101_4h_R1 4 SPGKAEAESDALPDDTVIESEALPSDIAAEAR 32 1 Q9GZR7-2;Q9GZR7;G3V529;A0A1W2PRR2;F5GYL3 Q9GZR7-2 DDX24 ATP-dependent RNA helicase DDX24 1 0 S(0.96)PGKAEAES(0.04)DALPDDTVIESEALPSDIAAEAR;S(0.788)PGKAEAES(0.21)DALPDDT(0.002)VIESEALPSDIAAEAR;S(0.967)PGKAEAES(0.033)DALPDDTVIESEALPSDIAAEAR;S(0.915)PGKAEAES(0.085)DALPDDTVIESEALPSDIAAEAR ;;; 91.064 1.32E-08 328022000 7353.1 8124.9 8052 7516.2 8461.2 8117.7 6578.7 6028 7956 9107.3 TRUE FALSE FALSE 6491.180765 8375.218539 8487.315476 7822.743124 7837.034133 7962.868398 6832.442663 6714.203154 7628.050313 9053.129375 0.71700961 0.925118618 0.937500739 0.864092713 0.865671284 0.879570817 0.754705073 0.74164445 0.842587132 1 13.14420086 -9.606508819 1.412391192 0.999867074 0.825003587 0.012624289 0.086399637 0.359281242 1.287905813 0.05901636 0.013647088 2.47E-10 9.606508819 -0.174863487 ANAEK(ac)TSGSNVK ddPTM_HeLa_CUDC101_4h_R1 2 ANAEKTSGSNVK 12 1 P56381 P56381 ATP5E "ATP synthase subunit epsilon, mitochondrial" 0 1 ; ANAEK(1)TSGSNVK;ANAEK(1)TSGSNVK 187.78 6.12E-08 1275840 474.15 320.39 578.79 575.09 472.88 417.9 501.13 414.47 477.05 633.73 FALSE TRUE FALSE 418.5708558 330.2608361 610.0811381 598.544656 437.9965845 409.9292538 520.458752 461.6515895 457.3857971 629.9605458 0.664439795 0.524256381 0.968443408 0.950130385 0.695276216 0.650722107 0.826176743 0.732826195 0.726054671 1 9.299117666 -9.405182609 1.151986836 0.99892661 0.747776992 0 0.152830759 0.458909409 1.096634964 0.090790587 0.02348542 3.93E-10 9.405182609 -0.251149617 FS(ph)PVLGR ddPTM_HeLa_CUDC101_4h_R1 2 FSPVLGR 7 0 F8VZ44;Q9NRG9-2;Q9NRG9 F8VZ44 AAAS Aladin 1 0 FS(1)PVLGR;FS(1)PVLGR ; 93.162 0.029823 363470000 15354.7 10966.6 10067.6 11596.1 11405.3 11059.4 10800 9429.9 9645.3 8513.4 TRUE FALSE FALSE 13554.84534 11304.46795 10611.88491 12069.03908 10563.95374 10848.46037 11216.55962 10503.3617 9247.716652 8462.761918 1.601704677 1.335789433 1.253950544 1.426134777 1.24828677 1.28190542 1.325401769 1.241126928 1.092753966 1 13.04691286 -9.605606493 1.423728081 1.001076368 1.37163065 0.515567374 0.109315584 0.263039526 0.961367168 0.091739559 0.02142314 2.48E-10 9.605606493 0.370554282 SSPETGTTGDVAWQIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SSPETGTTGDVAWQISPK 18 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 SSPETGTTGDVAWQIS(1)PK;SSPETGTTGDVAWQIS(1)PK ; 175.39 1.55E-07 22036400 3568.5 3514.9 3291.1 3283.9 3712.2 3357.7 3297 2811.5 3919.4 3700.4 TRUE FALSE FALSE 3150.205839 3623.189903 3469.026821 3417.831636 3438.358402 3293.657467 3424.166394 3131.549796 3757.840673 3678.389856 0.856408908 0.984993447 0.943082967 0.929165143 0.93474551 0.895407392 0.930887298 0.851337112 1.021599346 1 11.84485868 -9.604837368 1.404441991 1.000011436 0.910957805 0.474614594 0.039089499 0.349766796 1.237924051 0.029177743 0.006727097 2.48E-10 9.604837368 -0.089053632 ASEKPPERVQK ddPTM_HeLa_CUDC101_4h_R1 2 ASEKPPERVQK 11 2 A6NHN7;A6NHB5;A6NL54;A6NC58 A6NHN7 ZMYM3 0 0 ; ; 118.26 0.0078381 166667000 1981.16 4686.8 7977.2 12373.2 12134.2 13295.6 12634.2 9745.3 678.83 475.48 FALSE FALSE TRUE 1748.931428 4831.194753 8408.471562 12877.83258 11239.08424 13042.00858 13121.50533 10854.66556 650.8483401 472.6518238 3.70025321 10.22146644 17.78999072 27.24591746 23.77878107 27.59326829 27.76146132 22.9654579 1.377014342 1 8.884634012 -6.780814615 1.366714251 2.010252605 26.26956215 0.973229164 1.742178289 0.039291417 0.14770033 0.30631273 0.45072751 1.66E-07 6.780814615 24.25930954 up ANDDIIVNWVNR ddPTM_HeLa_CUDC101_4h_R1 1 ANDDIIVNWVNR 12 0 P13797;P13797-3;A0A0A0MSQ0;P13797-2 P13797 PLS3 Plastin-3 0 0 156.01 0.0010348 19109000 1350.3 1032.4 1059.8 1006.5 1240.3 1050.5 1121.6 944.69 977.35 1349.8 FALSE FALSE TRUE 1192.019881 1064.20702 1117.095994 1047.54942 1148.80554 1030.463463 1164.860488 1052.229691 937.0632193 1341.77133 0.88839272 0.793135907 0.832553185 0.780721273 0.856185786 0.767987391 0.868151273 0.784209401 0.698377733 1 10.38992311 -8.110434119 0.639244824 0.992472116 0.808763847 0 0.097710184 0.187184268 0.171335604 0.014583323 0.008920091 7.75E-09 8.110434119 -0.183708269 NFTPPS(ph)PFANK ddPTM_HeLa_CUDC101_4h_R1 1 NFTPPSPFANK 11 0 Q9NPG3;Q9NPG3-2;K7EJT1 Q9NPG3 UBN1 Ubinuclein-1 1 0 NFT(0.373)PPS(0.627)PFANK 82.505 0.035403 8077600 1008.6 967.63 1295.7 1312.1 1245.7 1225.4 1254 1065.7 930.82 1579.5 TRUE FALSE FALSE 890.3734369 997.4415334 1365.749461 1365.613109 1153.807193 1202.027537 1302.3672 1187.01498 892.4512056 1570.105064 0.56707889 0.635270567 0.869845906 0.869759063 0.734859863 0.765571403 0.82947774 0.756009905 0.568402221 1 10.61664539 -9.603978217 1.428911077 0.998877317 0.7324925 0 0.16145793 0.312957049 1.154476694 0.078474619 0.018445343 2.49E-10 9.603978217 -0.266384817 TISIDENMEPS(ph)PTGDFYPSPS(ph)SPAAGSR ddPTM_HeLa_CUDC101_4h_R1 1 TISIDENMEPSPTGDFYPSPSSPAAGSR 28 0 Q5VW31;O00712;O00712-4;A0A1B0GW37;U3KQE8;A0A0A0MRX8;A0A1B0GU97;A0A2R8Y7V8;Q5VW30;Q5VW27;A0A1B0GWI9;A0A1B0GWJ4;A0A1B0GWB8;A0A1B0GVN4;Q5VW26;O00712-5;O00712-6 Q5VW31 NFIB Nuclear factor 1 B-type;Nuclear factor 1 2 0 TISIDENMEPS(0.754)PT(0.229)GDFY(0.018)PS(0.318)PS(0.359)S(0.314)PAAGS(0.009)R 86.241 3.21E-06 5175200 2300.9 2166.4 2149.2 1589.6 2180.5 1960 2151.7 1835 2266.1 2505.1 TRUE FALSE FALSE 2031.19199 2233.144216 2265.392253 1654.430759 2019.648859 1922.616266 2234.69179 2043.888983 2172.690399 2490.199554 0.815674385 0.896773197 0.909723178 0.664376779 0.811038961 0.772073171 0.897394663 0.82077317 0.872496502 1 11.28204564 -9.60200346 0.441447481 1.072804408 0.812764998 0.179367701 0.078414765 1.677578426 0.35392138 0.205463766 0.020101837 2.50E-10 9.60200346 -0.260039409 DNTRPGANS(ph)PEMWSEAIK ddPTM_HeLa_CUDC101_4h_R1 2 DNTRPGANSPEMWSEAIK 18 1 F1T0B3;A0A087X2G1;Q92499-3;Q92499-2;Q92499 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 1 0 DNT(0.217)RPGANS(0.783)PEMWSEAIK;DNTRPGANS(1)PEMWSEAIK ; 94.456 0.0020768 94835000 5167.9 4899.1 4683.2 5127.9 4974.5 4746.8 4510.7 5291.3 5161 5472.1 TRUE FALSE FALSE 4562.126596 5050.035464 4936.387958 5337.037927 4607.541046 4656.262699 4684.67921 5893.640204 4948.261396 5439.551706 0.838695327 0.928391849 0.907499041 0.981154002 0.847044259 0.856001184 0.861225238 1.08347903 0.909681838 1 12.40927204 -9.600971308 1.411550328 0.999780829 0.899796291 0 0.076470897 0.523996101 1.880039029 0.049040093 0.011441162 2.51E-10 9.600971308 -0.099984538 ANK(ac)ITITNDK ddPTM_HeLa_CUDC101_4h_R1 2 ANKITITNDK 10 1 P17066;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 P17066;A0A0G2JIW1 HSPA6;HSPA1B;HSPA1A Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 1 ; ANK(1)ITITNDK;ANK(1)ITITNDK 178.46 0.0003063 13694400 4701.7 3745.2 3545.7 3910.3 3543.9 3609.7 3679.7 3750.6 3580.6 3968.6 FALSE TRUE FALSE 4150.573853 3860.585173 3737.391267 4069.778936 3282.473557 3540.850987 3821.627262 4177.553144 3433.006152 3944.994591 1.052111418 0.978603414 0.947375511 1.031631056 0.832060344 0.897555346 0.968728137 1.058950284 0.870218215 1 11.94580761 -7.044787276 4.460367424 1.02450881 0.952252018 0 0.077860105 0.244509403 10.70447221 0.010424106 0.01310359 9.02E-08 7.044787276 -0.072256792 ANK(ac)ITITNDKGR ddPTM_HeLa_CUDC101_4h_R1 2 ANKITITNDKGR 12 2 P17066;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 P17066;A0A0G2JIW1 HSPA6;HSPA1B;HSPA1A Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 1 ; ANK(1)ITITNDKGR;ANK(1)ITITNDKGR 153.49 0.00010313 4331000 624.7 530.21 524.75 678.37 809.14 614.29 694.64 817.36 615.43 521.68 FALSE TRUE FALSE 551.473613 546.5451416 553.1195723 706.0368608 749.4513542 602.5734417 721.4324975 910.4049585 590.0617149 518.5770242 1.063436264 1.053932427 1.066610256 1.361488897 1.445207403 1.161974815 1.391177133 1.755582905 1.137847778 1 9.018414478 -1 0.269535753 0.993433171 5.817489188 0.717021098 0.120766561 16.49254825 0.20909481 0.053778795 37.47268225 0.1 1 4.824056017 KTVTPAK(ac)AVTTPGKK ddPTM_HeLa_CUDC101_4h_R1 1 KTVTPAKAVTTPGKK 15 3 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 KTVTPAK(1)AVTTPGKK 124.16 0.0023806 7595200 2281.6 2982.7 3925.4 4631.1 5088.9 4594.5 5142.8 5505.3 1585.1 1457.5 FALSE TRUE FALSE 2014.154307 3074.593452 4137.618998 4819.976275 4713.501986 4506.867567 5341.159519 6132.001099 1519.761507 1448.830725 1.390192982 2.122120547 2.855833277 3.326804292 3.253314486 3.110692981 3.686531094 4.232379251 1.04895726 1 10.50067333 -6.776308355 0.776396796 1.07392923 3.690747017 0.941195986 0.263240976 0.095647151 0.116271042 0.061941272 0.101044833 1.67E-07 6.776308355 2.616817787 up ANK(ac)KK(ac)PSMPNVSNDLSQK ddPTM_HeLa_CUDC101_4h_R1 1 ANKKKPSMPNVSNDLSQK 18 3 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 0 2 ANK(0.896)K(0.489)K(0.615)PSMPNVSNDLSQK 107.51 0.017682 1763200 0 0 0 0 220.6 145.69 0 132.33 0 0 FALSE TRUE FALSE 0 0 0 0 204.3267775 142.911206 0 147.3939123 0 0 0 HDT(ph)PDPS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 2 HDTPDPSPLR 10 0 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HDT(1)PDPS(1)PLR;HDT(1)PDPS(1)PLR ; 130.69 0.0081915 88544000 9476.4 9515.6 8868.3 9253.9 8656.1 9436.7 9721.8 9428 10496.2 10722.5 TRUE FALSE FALSE 8365.590757 9808.764357 9347.747123 9631.314041 8017.556748 9256.71067 10096.77308 10501.24541 10063.54219 10658.72209 0.784858699 0.920257069 0.877004489 0.903608702 0.752206191 0.86846346 0.947278013 0.985225557 0.944160295 1 13.37974686 -9.600872182 1.409280565 0.999754307 0.866290753 0.19162039 0.068748652 0.406193481 1.451871545 0.050715558 0.011814425 2.51E-10 9.600872182 -0.133463555 ANLQIDQINTDLNLER ddPTM_HeLa_CUDC101_4h_R1 1 ANLQIDQINTDLNLER 16 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 214.58 3.88E-23 5952500 1481.6 1141.8 1160.4 885.61 1217.3 1214 1300.4 1241.1 1054.4 1220.4 FALSE FALSE TRUE 1307.929094 1176.977505 1223.134734 921.7290037 1127.502204 1190.844973 1350.556864 1382.381807 1010.937186 1213.141007 1.078134435 0.970190191 1.008237894 0.759787196 0.92940738 0.981621235 1.113272782 1.13950629 0.833322079 1 10.24453153 -7.238907711 23.6569852 1.036896819 0.98070751 0 0.118153315 990.9646778 1040456.692 0.017850653 0.021851758 5.77E-08 7.238907711 -0.05618931 QEPLGSDS(ph)EGVNCLAYDEAIMAQQDR ddPTM_HeLa_CUDC101_4h_R1 1 QEPLGSDSEGVNCLAYDEAIMAQQDR 26 0 J3KR44;F5H6Q1;F5GYJ8;Q96FW1;F5H3F0 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 1 0 QEPLGS(0.287)DS(0.713)EGVNCLAYDEAIMAQQDR 133.56 2.89E-11 8601700 1537 1161.8 1033.5 980.81 988.75 927.1 931.23 1247.2 1335.2 752.01 TRUE FALSE FALSE 1356.83519 1197.593681 1089.374136 1020.811671 915.8118824 909.4171122 967.147853 1389.176207 1280.162491 747.5370111 1.815074264 1.602052692 1.457284549 1.365566729 1.225105739 1.216551286 1.293779223 1.858337696 1.712507169 1 9.5460012 -9.60044636 1.421515696 1.002011231 1.505692393 0 0.305224142 0.362604264 1.323172543 0.171272242 0.040284547 2.51E-10 9.60044636 0.503681162 TLHCEGTEINS(ph)DDEQESK ddPTM_HeLa_CUDC101_4h_R1 5 TLHCEGTEINSDDEQESK 18 0 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 TLHCEGTEINS(1)DDEQESK;TLHCEGTEINS(1)DDEQESK;TLHCEGTEINS(1)DDEQESK;TLHCEGTEINS(1)DDEQESK;TLHCEGTEINS(1)DDEQESK ;;;; 254.54 3.41E-57 597678000 25925.2 19197.6 18970.2 17865.2 18686.44 19098.7 18029 14688.83 21488 14179.5 TRUE FALSE FALSE 22886.28736 19789.0553 19995.78639 18593.82008 17307.97855 18734.42412 18724.38457 16360.94703 20602.25554 14095.1597 1.623698336 1.403961056 1.41862787 1.319163491 1.22793774 1.329138833 1.328426564 1.160749319 1.461654637 1 13.7829122 -9.600205132 1.419192278 1.001421129 1.387174914 0 0.184773637 0.282010743 1.025197796 0.101950867 0.023949169 2.51E-10 9.600205132 0.385753785 AS(ph)PDMDGYPALK ddPTM_HeLa_CUDC101_4h_R1 1 ASPDMDGYPALK 12 0 H0YBE8;H3BLZ3;Q8IX03;Q8IX03-2;H0YAU4 H0YBE8 WWC1 Protein KIBRA 1 0 AS(1)PDMDGYPALK 79.492 0.036242 8709300 1143.9 944.95 867.86 808.36 795.32 879.16 809.77 1037.3 1133.1 778.98 TRUE FALSE FALSE 1009.813776 974.0627895 914.7791367 841.3284148 736.6508281 862.3914878 841.0031002 1155.382039 1086.393138 774.3465923 1.304085 1.257915769 1.181356186 1.086501088 0.951319261 1.11370218 1.086080973 1.492073511 1.40298046 1 9.596835641 -9.600127617 1.424237231 1.000849099 1.18863157 0 0.186569096 0.57054972 2.091708519 0.100511815 0.02370044 2.51E-10 9.600127617 0.187782471 ANPQVGVAFPHIK ddPTM_HeLa_CUDC101_4h_R1 1 ANPQVGVAFPHIK 13 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 0 80.245 0.024251 613520 517.02 673.22 585.1 426.14 653.65 578.56 704.97 542.29 563.43 471.1 FALSE FALSE TRUE 456.4156994 693.9611102 616.7322758 443.5198311 605.4315418 567.5249319 732.160929 604.0221016 540.2051769 468.2978762 0.974626883 1.481879687 1.316965776 0.947089136 1.292834267 1.211888759 1.563451312 1.289824559 1.153550345 1 8.871282685 -6.357159154 0.349730572 0.952105659 1.445651057 0.153879197 0.182489404 1.362884659 0.340544812 0.095216593 0.258075715 4.39E-07 6.357159154 0.493545398 EGS(ph)PIPHDPEFGSK ddPTM_HeLa_CUDC101_4h_R1 5 EGSPIPHDPEFGSK 14 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 1 0 EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK;EGS(1)PIPHDPEFGSK ;;;; 140.68 0.00032416 2173380000 56515.8 45581.8 44884.4 41537.1 46222.4 45382.3 44359.9 41858.7 50140.2 40786.5 TRUE FALSE FALSE 49891.1036 46986.12123 47310.98643 43231.16248 42812.66564 44516.70824 46070.8762 46623.72521 48073.39973 40543.90008 1.230545248 1.158894954 1.166907632 1.066280313 1.055958247 1.097987814 1.136320781 1.149956593 1.185712268 1 15.30719725 -9.599471585 1.419187838 1.000555004 1.143200255 0 0.074864756 0.316176708 1.149736463 0.042248045 0.009936784 2.51E-10 9.599471585 0.142645251 QDS(ph)MEALQMDR ddPTM_HeLa_CUDC101_4h_R1 2 QDSMEALQMDR 11 0 Q8TDR0-2;Q8TDR0 Q8TDR0-2 TRAF3IP1 TRAF3-interacting protein 1 1 0 QDS(1)MEALQMDR;QDS(1)MEALQMDR ; 112.24 0.0063511 9688300 2829.4 2447.23 2885.8 2886.2 3043.3 2862.9 2372 2721.4 2874.6 3144.6 TRUE FALSE FALSE 2497.742021 2522.626256 3041.815077 3003.911711 2818.801822 2808.294952 2463.488835 3031.193176 2756.107771 3125.895779 0.7990484 0.807009073 0.973101886 0.960976284 0.901758095 0.89839686 0.788090521 0.969703851 0.881701748 1 11.61005396 -9.598421616 1.422046976 0.999422003 0.875132415 0 0.076005813 0.427813571 1.563790713 0.049807857 0.011759999 2.52E-10 9.598421616 -0.124289588 GSGTAS(ph)DDEFENLR ddPTM_HeLa_CUDC101_4h_R1 4 GSGTASDDEFENLR 14 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 GSGT(0.005)AS(0.995)DDEFENLR;GSGT(0.071)AS(0.929)DDEFENLR;GSGTAS(1)DDEFENLR;GSGT(0.002)AS(0.998)DDEFENLR ;;; 250.52 4.37E-56 850511000 8270.5 6143.46 5897.59 6074.6 7343.6 7494.9 6242.6 6301.6 7102.2 5959.39 TRUE FALSE FALSE 7301.044527 6332.732721 6216.431555 6322.348445 6801.877259 7351.94727 6483.379173 7018.948672 6809.44431 5923.943283 1.232463611 1.069006305 1.049373915 1.067253372 1.148200942 1.241056323 1.094436402 1.184844003 1.149478309 1 12.53234211 -9.598361741 1.397245532 1.000075192 1.145067674 0 0.078959801 0.378029425 1.325290685 0.051060189 0.011840438 2.52E-10 9.598361741 0.144992482 CDAVMPPGRS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 CDAVMPPGRSR 11 1 K7EKX9;K7EN83;B4DKV7;Q8TE68-3;Q8TE68 K7EKX9 EPS8L1 Epidermal growth factor receptor kinase substrate 8-like protein 1 1 0 CDAVMPPGRS(1)R;CDAVMPPGRS(1)R ; 114.76 0.034171 16461500 405.66 222.056 269.89 225.116 252.51 143.84 330.41 327.23 138.4 152.4 TRUE FALSE FALSE 358.1091497 228.8972822 284.4810698 234.2972035 233.8828404 141.0964917 343.1540244 364.4805405 132.6950934 151.493518 2.363857902 1.510937796 1.877843181 1.546582366 1.543847179 0.931369827 2.26513998 2.405915086 0.87591268 1 7.243112256 -9.59827809 1.404751582 1.001542225 1.850032788 0.377761014 0.438315211 0.417740943 1.483358042 0.330732405 0.07713064 2.52E-10 9.59827809 0.848490563 PELAK(ac)SAPAPK(ac)K(ac)GSK ddPTM_HeLa_CUDC101_4h_R1 2 PELAKSAPAPKKGSK 15 3 Q99880 Q99880 HIST1H2BL Histone H2B type 1-L 0 3 ; PELAK(1)SAPAPK(1)K(1)GSK;PELAK(1)SAPAPK(1)K(1)GSK 222.75 9.56E-34 4610100 953.22 1669.69 3609.9 5893 5234.4 5370.2 5038.7 5104.7 364.23 391.14 FALSE TRUE FALSE 841.4849966 1721.13117 3805.062113 6133.342012 4848.26874 5267.772382 5233.044347 5685.798414 349.2162852 388.8134819 2.164238217 4.426624204 9.786343043 15.77450962 12.46939462 13.54832748 13.4590095 14.62346004 0.89815889 1 8.602934434 -6.732975511 1.928336149 1.538024144 13.88153739 0.971481262 0.96670141 0.034039195 0.259081883 0.159235933 0.231460601 1.85E-07 6.732975511 12.34351325 up TLLWK(ac)K(ac)ISNTK ddPTM_HeLa_CUDC101_4h_R1 1 TLLWKKISNTK 11 2 Q5VUD6-2;Q5VUD6 Q5VUD6-2 FAM69B Protein FAM69B 0 2 TLLWK(1)K(1)ISNTK 62.732 0.031509 0 1206.2 1715.8 2840.8 4914.3 4906.6 4985.1 4588.3 3888.8 245.85 243.69 FALSE TRUE FALSE 1064.811064 1768.661764 2994.382241 5114.726395 4544.649893 4890.017523 4765.272268 4331.485273 235.7159589 242.240521 4.395676908 7.301263045 12.36119468 21.11424783 18.76089877 20.18662073 19.67165628 17.88092782 0.973065769 1 7.920296403 -6.727404103 1.341691514 2.405945219 19.75408992 0.967863327 1.400737937 0.050434355 0.182947367 0.27521194 0.416563077 1.87E-07 6.727404103 17.3481447 up ANSFLEELRHSSLER ddPTM_HeLa_CUDC101_4h_R1 2 ANSFLEELRHSSLER 15 1 E7EU72;E7EVH6;E7ENR9;E7END6;P04070;P04070-2 E7EU72 PROC Osteocalcin;Vitamin K-dependent protein C;Vitamin K-dependent protein C light chain;Vitamin K-dependent protein C heavy chain;Activation peptide 0 0 ; ; 78.505 0.028988 20252500 6226.1 5621.6 5262.8 4866 6030.5 5936.2 5365.7 5448.6 5936.4 5875 FALSE FALSE TRUE 5496.285996 5794.794833 5547.322887 5064.456513 5585.642029 5822.976875 5572.656846 6068.8466 5691.699079 5840.055239 0.94113596 0.992250004 0.949875071 0.867193255 0.956436506 0.99707565 0.954213037 1.039176232 0.974596788 1 12.5117663 -2.701817681 1.686633381 0.963857338 12.74972993 0.28074032 0.03706126 273.5880322 6.14746455 0.005888157 12234.40485 0.001986929 2.701817681 11.78587259 CGLPVS(ph)VYCLRTPR ddPTM_HeLa_CUDC101_4h_R1 1 CGLPVSVYCLRTPR 14 1 A6NFN9-1;A6NFN9;A6NFN9-3 A6NFN9-1 ANKUB1 Protein ANKUB1 1 0 CGLPVS(0.988)VY(0.012)CLRTPR 64.945 0.033436 21318000 5936.4 4953.6 4808.8 5066.6 5707.6 5330.9 4996.4 3793.8 4807.7 6787 TRUE FALSE FALSE 5240.544191 5106.214545 5068.778274 5273.237848 5286.561719 5229.221964 5189.112822 4225.670857 4609.524571 6746.630622 0.776764653 0.756854025 0.751305141 0.781610576 0.783585469 0.775086448 0.769141385 0.626337959 0.683233577 1 12.71995146 -9.597557872 0.366416689 1.122953765 0.735888322 0 0.10885869 0.978771696 0.142319716 0.155287506 0.016032886 2.53E-10 9.597557872 -0.387065444 TRTDSYSAGQS(ph)VEILDGVELGEPAHK ddPTM_HeLa_CUDC101_4h_R1 1 TRTDSYSAGQSVEILDGVELGEPAHK 26 1 B1AKQ2;B1AKP8;P42345 B1AKQ2 MTOR Serine/threonine-protein kinase mTOR 1 0 T(0.02)RT(0.02)DS(0.082)Y(0.069)S(0.082)AGQS(0.727)VEILDGVELGEPAHK 99.957 1.71E-06 12554000 4591.2 2965.7 2749.8 2939 3828.1 3854.7 3490.2 3291 2308.9 2647.9 TRUE FALSE FALSE 4053.026496 3057.069702 2898.462506 3058.865123 3545.70869 3781.17802 3624.818183 3665.634137 2213.726165 2632.150173 1.539815827 1.161434379 1.101176724 1.162116491 1.347076898 1.436535825 1.377131981 1.392638678 0.841033383 1 11.36202609 -9.597387896 1.395358687 1.000160961 1.337235675 0.525402616 0.142888912 0.350365101 1.224858336 0.10990493 0.025492811 2.53E-10 9.597387896 0.337074714 KFELLPTPPLS(ph)PSRR ddPTM_HeLa_CUDC101_4h_R1 1 KFELLPTPPLSPSRR 15 2 H0YBG3;A0A0B4J1R1;H0YBT0;A0A087WUS5;P01106;P01106-2 H0YBG3 MYC Myc proto-oncogene protein 1 0 KFELLPTPPLS(0.886)PS(0.114)RR 102.39 0.0040177 46060000 7266.5 5605.6 3705.2 3123.5 3490.6 2669.5 3075.4 2092.6 6553.4 6859.3 TRUE FALSE FALSE 6414.731885 5778.301892 3905.51432 3250.889831 3233.105392 2618.583735 3194.019208 2330.813125 6283.266078 6818.500579 0.94078336 0.847444658 0.572781988 0.476774885 0.474166623 0.384040993 0.468434251 0.34183661 0.92150261 1 12.7352388 -6.72457551 1.350846354 0.978576599 0.417433384 0.968940519 0.042618144 0.037818363 0.139118197 0.006693433 0.010136204 1.89E-07 6.72457551 -0.561143215 down SSSTS(ph)ESGDSDNMR ddPTM_HeLa_CUDC101_4h_R1 1 SSSTSESGDSDNMR 14 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 S(0.015)S(0.015)S(0.051)T(0.263)S(0.651)ES(0.005)GDSDNMR 143.58 2.85E-05 0 2973.1 4299.1 4537 6345.7 4373 5446.3 4146.1 3352.5 5864.3 7120.5 TRUE FALSE FALSE 2624.597725 4431.550175 4782.283944 6604.505074 4050.412502 5342.420902 4306.016466 3734.135049 5622.571072 7078.146949 0.370802944 0.626089032 0.67564067 0.933083916 0.572241934 0.754776771 0.608353641 0.527558283 0.794356364 1 12.789156 -9.596868463 1.40892433 0.99885691 0.607695951 0.283911637 0.152140014 0.310331137 1.11039499 0.113274943 0.02656145 2.53E-10 9.596868463 -0.391160959 KVS(ph)SAEGAAKEEPK ddPTM_HeLa_CUDC101_4h_R1 1 KVSSAEGAAKEEPK 14 2 P05114;F2Z2W6;F2Z2Y5;H7BXJ5;A0A494C035 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 KVS(0.908)S(0.092)AEGAAKEEPK 69.148 0.040132 11157000 1483.7 1798.1 1317.7 1440.8 1692.1 1626.1 1483.9 1073.3 1430.2 1782.4 TRUE FALSE FALSE 1309.782935 1853.49733 1388.938848 1499.562052 1567.277154 1595.084852 1541.13452 1195.480134 1371.246551 1771.798206 0.739239339 1.046110852 0.783914807 0.846350361 0.884568654 0.900263273 0.869813794 0.674727026 0.773929303 1 10.79099859 -9.596860151 1.379950474 1.000328095 0.836591144 0 0.117304698 0.444051344 1.51211577 0.06740136 0.015469074 2.53E-10 9.596860151 -0.163736952 TSDVNETQPPQS(ph)E ddPTM_HeLa_CUDC101_4h_R1 1 TSDVNETQPPQSE 13 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 1 0 TSDVNET(0.001)QPPQS(0.999)E 83.869 0.025694 7395900 2869.8 2810.9 2480.3 2796.4 2953.3 2745.8 2734.4 2723.9 2445.8 3122.7 TRUE FALSE FALSE 2533.406394 2897.500497 2614.39252 2910.449279 2735.440943 2693.42844 2839.866724 3033.977766 2344.983089 3104.126042 0.8161416 0.933435195 0.842231432 0.937606669 0.881227407 0.867693001 0.914868367 0.977401602 0.75544068 1 11.59997142 -9.596318824 1.402876508 0.999764572 0.885194757 0 0.088596946 0.321201391 1.137862218 0.034282505 0.008010735 2.53E-10 9.596318824 -0.114569815 VQEKPDSPGGS(ph)TQIQR ddPTM_HeLa_CUDC101_4h_R1 1 VQEKPDSPGGSTQIQR 16 1 M0R0P8;Q13459-2;Q13459;M0R300 M0R0P8 MYO9B Unconventional myosin-IXb 1 0 VQEKPDS(0.035)PGGS(0.482)T(0.482)QIQR 70.167 0.018061 93156000 3224.8 2812.6 2993 2816.4 3139.5 3283.4 2727.3 2710.5 2571.1 3169 TRUE FALSE FALSE 2846.793832 2899.252872 3154.810633 2931.264966 2907.90534 3220.774616 2832.492875 3019.052364 2465.11817 3150.150647 0.903700855 0.920353722 1.00147929 0.930515805 0.923100406 1.022419235 0.899161085 0.958383488 0.782539772 1 11.62120511 -9.596295761 1.41339515 0.999772028 0.939972648 0 0.077883057 0.47347134 1.707307676 0.026437375 0.006225468 2.53E-10 9.596295761 -0.05979938 VAVATPAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VAVATPAKK 9 1 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 ; VAVATPAK(1)K;VAVATPAK(1)K 134.48 0.0014364 448710000 8267.8 11505.6 14983.7 22092.8 23568.5 23424.8 23321.8 24557.5 3594.1 2747.04 FALSE TRUE FALSE 7298.661017 11860.0739 15793.76415 22993.83988 21829.89871 22978.01097 24221.32964 27353.02654 3445.949677 2730.700484 2.672816393 4.343234994 5.783777547 8.420491377 7.994248669 8.414694729 8.870005986 10.01685344 1.261928834 1 11.41505537 -6.716718618 0.69468025 1.374763317 9.371128813 0.976800784 0.484537865 0.068400034 0.067187636 0.126116087 0.221123905 1.92E-07 6.716718618 7.996365495 up GGEPPPLFGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 GGEPPPLFGKK 11 1 H9KVB4;O15417-2;O15417 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 0 1 ; GGEPPPLFGK(1)K;GGEPPPLFGK(1)K 132.01 0.00079821 1013820 471.13 559.76 841.18 1146.16 1163.17 1363.38 921.01 1174.66 139.53 355.75 FALSE TRUE FALSE 415.9048556 577.0055421 886.6567352 1192.905359 1077.365266 1337.375798 956.5336642 1308.378546 133.7785143 353.6339832 1.176088485 1.631646192 2.507272427 3.373276935 3.04655468 3.781807919 2.704869186 3.699809997 0.378296546 1 8.46611311 -6.706102021 1.559577743 1.071315994 3.32401688 0.898722659 0.365010253 0.059181479 0.292241076 0.045033432 0.067592098 1.97E-07 6.706102021 2.252700886 up DSSPASGTDRDS(ph)PEPLLK ddPTM_HeLa_CUDC101_4h_R1 1 DSSPASGTDRDSPEPLLK 18 1 A6NHT5 A6NHT5 HMX3 Homeobox protein HMX3 1 0 DSSPAS(0.014)GT(0.005)DRDS(0.98)PEPLLK 74.029 0.0085409 24934000 2989.3 2832 3176.6 3564.6 3415 3193.4 3119.7 3191 3045.2 3995 TRUE FALSE FALSE 2638.898785 2919.250563 3348.336605 3709.979796 3163.082254 3132.491216 3240.027874 3554.250542 2919.675567 3971.237562 0.664502877 0.735098447 0.843146891 0.934212506 0.796497868 0.788794719 0.815873597 0.894998218 0.735205467 1 11.95537295 -9.595503993 1.414653743 0.999113856 0.790792417 0 0.108945598 0.311317714 1.125323592 0.06054455 0.014289175 2.54E-10 9.595503993 -0.208321439 ANVGK(ac)LLK ddPTM_HeLa_CUDC101_4h_R1 2 ANVGKLLK 8 1 A0A087WVB9;K7ERF1;Q9UBQ5;K7ES31;K7EQM4;Q9UBQ5-2 A0A087WVB9 EIF3K Eukaryotic translation initiation factor 3 subunit K 0 1 ; ANVGK(1)LLK;ANVGK(1)LLK 98.523 0.016622 1845610 1440.43 852.42 799.24 957.08 1084.03 852.78 767.94 915.65 828 426.83 FALSE TRUE FALSE 1271.584979 878.6820498 842.449332 996.1138593 1004.063267 836.5146423 797.559703 1019.883895 793.8694895 424.2911962 2.996962912 2.070941037 1.985545162 2.34771277 2.366448504 1.971557859 1.879746057 2.403735699 1.871048696 1 8.728910934 -9.544346162 1.313393823 1.000928937 2.318670566 0.31961141 0.401510938 0.227391306 0.703419208 0.26515615 0.063140292 2.86E-10 9.544346162 1.317741629 ICLS(ph)LGR ddPTM_HeLa_CUDC101_4h_R1 1 ICLSLGR 7 0 Q504Y2 Q504Y2 PKDCC Extracellular tyrosine-protein kinase PKDCC 1 0 ICLS(1)LGR 91.093 0.032182 15561000 852.61 959.29 937.66 903.21 911.76 1083.3 959.8 1005.7 1471.4 1246.4 TRUE FALSE FALSE 752.6683483 988.8445879 988.3527359 940.0468078 844.5012813 1062.637857 996.8198075 1120.184823 1410.748269 1238.986357 0.607487196 0.798107729 0.79771075 0.758722485 0.681606602 0.857667117 0.80454462 0.904113928 1.138630995 1 10.27494459 -9.593172744 1.400449425 0.999380616 0.754188375 0.573449483 0.09453076 0.287470276 1.015503112 0.065503145 0.015360506 2.55E-10 9.593172744 -0.245192241 (ac)S(ph)DVEENNFEGRES(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SDVEENNFEGRESR 14 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(1)DVEENNFEGRES(1)R 64.407 0.018434 111740000 275.21 201.74 511.03 478.76 286.28 433.49 403.62 264.29 504.92 533.73 TRUE FALSE FALSE 242.950301 207.9553703 538.6578276 498.2859022 265.1616948 425.2219005 419.1877586 294.3757053 484.1069839 530.5553502 0.457916975 0.391957918 1.015271691 0.93917798 0.499781398 0.801465672 0.790092416 0.554844476 0.912453307 1 9.051359458 -9.590753687 1.414698378 0.998114666 0.660692026 0.226600195 0.198920389 0.464333796 1.681757828 0.145843289 0.034698321 2.57E-10 9.590753687 -0.33742264 GLGS(ph)PALGNQMGLQRSI ddPTM_HeLa_CUDC101_4h_R1 1 GLGSPALGNQMGLQRSI 17 1 A0A0U1RQJ0 A0A0U1RQJ0 1 0 GLGS(1)PALGNQMGLQRSI 72.289 0.0022563 0 238.3 196.87 257.57 263.67 357.49 367.49 223.44 200.99 438.61 341.61 TRUE FALSE FALSE 210.3668352 202.9353314 271.4950133 274.4236023 331.1186749 360.4807405 232.0581556 223.8698892 420.5303102 339.5780885 0.619494727 0.597610206 0.799506866 0.808131065 0.975088459 1.061554773 0.683371995 0.659258936 1.238390592 1 8.407599561 -9.590705862 1.416469976 0.998601985 0.761898013 0.365164841 0.163035616 0.502169269 1.824216946 0.110685473 0.026369542 2.57E-10 9.590705862 -0.236703972 IAQVS(ph)PGPR ddPTM_HeLa_CUDC101_4h_R1 1 IAQVSPGPR 9 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 IAQVS(1)PGPR 87.713 0.031897 10479000 2407.3 3046.6 2504.7 2244 2440.4 2687.4 1989.1 1950.4 2612.7 2885.5 TRUE FALSE FALSE 2125.119943 3140.462135 2640.111658 2335.520019 2260.376554 2636.142323 2065.820253 2172.425652 2505.0034 2868.336918 0.740889235 1.094872125 0.920432897 0.814241871 0.788044298 0.919049051 0.720215342 0.757381617 0.873329554 1 11.48599878 -9.590253161 1.347872969 1.000954748 0.835815831 0.051099434 0.112563911 0.53612737 1.730543073 0.081125942 0.018375627 2.57E-10 9.590253161 -0.165138917 PIIGT(ph)VS(ph)MDDMMLEMLCTKI ddPTM_HeLa_CUDC101_4h_R1 1 PIIGTVSMDDMMLEMLCTKI 20 1 P51843 P51843 NR0B1 Nuclear receptor subfamily 0 group B member 1 2 0 PIIGT(0.99)VS(0.99)MDDMMLEMLCT(0.019)KI 40.616 0.0032464 0 511.63 781.5 900.69 1095.3 1278.3 1138.9 1092.7 567.94 1220.5 1622.2 TRUE FALSE FALSE 451.657507 805.5770887 949.3840258 1139.971068 1184.002356 1117.17738 1134.845805 632.5919939 1170.190473 1612.551082 0.280088806 0.499566865 0.588746636 0.706936407 0.734241767 0.692801234 0.70375805 0.392292685 0.72567653 1 10.65512915 -9.590023483 1.40234959 0.998322768 0.548179937 0.272002846 0.164082309 0.292372352 1.037481126 0.122125055 0.028831208 2.57E-10 9.590023483 -0.450142831 VS(ph)PASPAGS(ph)PSADFAVHGESLGDR ddPTM_HeLa_CUDC101_4h_R1 1 VSPASPAGSPSADFAVHGESLGDR 24 0 A0A0A0MRP9;Q96C92-4;Q96C92-3;Q96C92-2;Q96C92 A0A0A0MRP9 SDCCAG3 Serologically defined colon cancer antigen 3 2 0 VS(0.79)PAS(0.219)PAGS(0.976)PS(0.016)ADFAVHGESLGDR 103.95 1.35E-05 40537000 1928.9 1359.9 1269.2 1127.7 1359.7 1567.3 1396.3 1392.3 1641.7 1036.4 TRUE FALSE FALSE 1702.797266 1401.796907 1337.816791 1173.69248 1259.39764 1537.406364 1450.155759 1550.793804 1574.028431 1030.235447 1.652823412 1.36065684 1.298554418 1.139246843 1.22243672 1.492286417 1.407596451 1.505280962 1.527833697 1 10.00875837 -9.589965319 1.394216376 1.000966843 1.410322663 0 0.213627411 0.312395338 1.093358026 0.118446274 0.02779892 2.57E-10 9.589965319 0.409355821 KEEPSQNDIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 KEEPSQNDISPK 12 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 KEEPS(0.007)QNDIS(0.993)PK 131.61 0.0030945 22397000 3778.9 4345.3 4835.9 4755.1 4412.6 4134.5 3652.3 3677 4121.1 5552.1 TRUE FALSE FALSE 3335.94307 4479.173543 5097.343382 4949.033531 4087.091289 4055.641301 3793.170434 4095.574817 3951.226514 5519.075862 0.604438706 0.811580354 0.923586395 0.89671417 0.740539067 0.734840651 0.687283619 0.742076195 0.715921762 1 12.430211 -9.588842067 1.38613065 0.999671073 0.750820031 0 0.124420595 0.329248894 1.137042178 0.075699337 0.01769388 2.58E-10 9.588842067 -0.248851042 GSPS(ph)PPQAEAR ddPTM_HeLa_CUDC101_4h_R1 2 GSPSPPQAEAR 11 0 M0R1G0;M0QZE8;M0R0K4;M0QYB1;M0R0E3;M0R0S2;M0QZF4;M0R0S1;M0R2P6;Q8TBC3 M0R1G0 SHKBP1 SH3KBP1-binding protein 1 1 0 GS(0.167)PS(0.833)PPQAEAR;GS(0.002)PS(0.998)PPQAEAR ; 92.781 0.0030093 8611400 5350.9 5008.7 5632.5 5625.1 5262.4 5336 4878.2 4525.7 6200.3 6010.3 TRUE FALSE FALSE 4723.675613 5163.01211 5937.009987 5854.515892 4874.203236 5234.22469 5066.353808 5040.887394 5944.72101 5974.550468 0.790632808 0.864167461 0.993716602 0.97990902 0.815827611 0.876086781 0.847989122 0.84372664 0.995007246 1 12.54461445 -9.588829483 1.391294216 0.999714902 0.868213216 0.374247061 0.061764114 0.40211291 1.401015972 0.048911711 0.011476652 2.58E-10 9.588829483 -0.131501686 ETVNS(ph)PAIYK ddPTM_HeLa_CUDC101_4h_R1 2 ETVNSPAIYK 10 0 Q9Y3A2 Q9Y3A2 UTP11L Probable U3 small nucleolar RNA-associated protein 11 1 0 ETVNS(0.993)PAIY(0.007)K;ETVNS(1)PAIYK ; 84.31 0.037069 44093000 4328.3 4348.1 5024.9 4378.4 5035.2 4832.8 4082.8 2750.9 3818.9 5250.9 TRUE FALSE FALSE 3820.943235 4482.059807 5296.561293 4556.970077 4663.763328 4740.622392 4240.274964 3064.051336 3661.483326 5219.667413 0.732028103 0.858686857 1.014731567 0.873038398 0.893498179 0.908223076 0.81236497 0.587020416 0.701478281 1 12.34974217 -9.588174503 1.384652479 0.999792897 0.831047031 0 0.141466684 0.512245902 1.765013813 0.079803135 0.018653646 2.58E-10 9.588174503 -0.168745866 IEDVTPIPSDS(ph)TR ddPTM_HeLa_CUDC101_4h_R1 3 IEDVTPIPSDSTR 13 0 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 1 0 IEDVTPIPSDS(0.989)T(0.011)R;IEDVTPIPSDS(0.945)T(0.055)R;IEDVTPIPS(0.045)DS(0.893)T(0.063)R ;; 250.05 6.70E-56 104953000 7069 8916.5 6320.7 7069.9 9544.6 7131.1 7343.1 6606.8 8926.2 9448 TRUE FALSE FALSE 6240.382536 9191.206796 6662.416161 7358.241081 8840.513874 6995.086149 7626.325827 7358.891406 8558.258258 9391.802876 0.664449906 0.978641366 0.709386286 0.783474821 0.941301046 0.744807599 0.812019367 0.783544065 0.911247646 1 13.19718641 -9.587819426 1.373845877 1.000108384 0.787997288 0.272115954 0.094911374 0.339004094 1.1466468 0.066206574 0.015360124 2.58E-10 9.587819426 -0.212111096 DGGS(ph)GNS(ph)TIIVSR ddPTM_HeLa_CUDC101_4h_R1 1 DGGSGNSTIIVSR 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 2 0 DGGS(1)GNS(0.965)T(0.035)IIVSR 121.95 0.019387 26437000 8391.6 4973.9 4888.5 4920 5478.8 5936.4 6077.4 6351.2 5120.1 3652.5 TRUE FALSE FALSE 7407.949369 5127.139963 5152.787097 5120.658866 5074.639839 5823.173061 6311.807354 7074.194936 4909.047311 3630.774768 2.040321927 1.412133853 1.419197672 1.410348808 1.397674096 1.603837592 1.738418866 1.948398176 1.352066053 1 11.82606172 -9.587174476 1.382053571 1.000700521 1.656701835 0.31040945 0.242800085 0.304493195 1.044925359 0.184192903 0.043043735 2.59E-10 9.587174476 0.656001314 IDLPEVQIEHDPELEKES(ph)PGLK ddPTM_HeLa_CUDC101_4h_R1 2 IDLPEVQIEHDPELEKESPGLK 22 1 Q14966-3;Q14966;Q14966-5 Q14966-3 ZNF638 Zinc finger protein 638 1 0 IDLPEVQIEHDPELEKES(1)PGLK;IDLPEVQIEHDPELEKES(1)PGLK ; 89.353 0.00023356 44305000 7252 7237.7 7488.4 7240.9 7486.8 7993.2 7202.5 6866.1 7264.3 8845.3 TRUE FALSE FALSE 6401.931553 7460.684958 7893.245555 7536.2152 6934.51368 7840.743028 7480.302838 7647.70907 6964.862479 8792.687762 0.728097224 0.848510167 0.897705658 0.857100286 0.788668251 0.8917345 0.850741325 0.869780581 0.792119846 1 13.10208852 -9.587075618 1.389584721 0.999591939 0.828575889 0 0.079812654 0.261263937 0.908276859 0.041269102 0.009699806 2.59E-10 9.587075618 -0.17101605 APAQK(ac)APAPK ddPTM_HeLa_CUDC101_4h_R1 2 APAQKAPAPK 10 1 P50914 P50914 RPL14 60S ribosomal protein L14 0 1 ; APAQK(1)APAPK;APAQK(1)APAPK 140.35 0.00082923 13276700 14796.9 10640.8 7305.7 16985.6 12683.3 13266.6 10761.1 9224 2371.4 799.77 FALSE TRUE FALSE 13062.42981 10968.63044 7700.668241 17678.34619 11747.67823 13013.56171 11176.15923 10274.02288 2273.649888 795.0129325 16.43046205 13.79679498 9.686217577 22.23655171 14.77671337 16.36899373 14.05783324 12.92308899 2.859890444 1 9.634834519 -9.238814008 0.735385685 4.51E-22 15.26744922 0.743196438 3.072948949 0.310435972 0.268139597 2.908853414 0.613686724 5.77E-10 9.238814008 15.26744922 GQGTPPS(ph)GPGVVR ddPTM_HeLa_CUDC101_4h_R1 1 GQGTPPSGPGVVR 13 0 A0A669KBI7;Q9UMN6 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 0 GQGT(0.109)PPS(0.891)GPGVVR 97.223 0.011511 26540000 4368 3796.4 3766.6 3775.9 4254.7 3747.1 3686.1 3422.9 4078.9 4593.6 TRUE FALSE FALSE 3855.989661 3913.362584 3970.233789 3929.897523 3940.839258 3675.630311 3828.274112 3812.5491 3910.766016 4566.277063 0.844449342 0.857013828 0.869468439 0.860634926 0.863031131 0.804951224 0.838379726 0.834935999 0.856445188 1 12.15680268 -9.586839055 0.447986225 1.061660735 0.839061017 0.020728091 0.048482152 0.499013593 0.10960471 0.052800528 0.0052677 2.59E-10 9.586839055 -0.222599718 GQS(ph)QLSNPT(ph)DDSWK ddPTM_HeLa_CUDC101_4h_R1 1 GQSQLSNPTDDSWK 14 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 2 0 GQS(1)QLS(0.078)NPT(0.903)DDS(0.019)WK 140.93 0.001838 6334900 2975.7 2263.7 1977.9 1958.9 2607.4 2385.5 2467.2 1544.3 2081 1806.1 TRUE FALSE FALSE 2626.892957 2333.441914 2084.831257 2038.792409 2415.057297 2340.000562 2562.36073 1720.09687 1995.220299 1795.357237 1.463158921 1.299708975 1.161234775 1.135591495 1.345168108 1.303362091 1.427214973 0.958080562 1.111322169 1 10.81005522 -9.586596221 1.391600416 1.000836644 1.292004003 0.211041442 0.146065812 0.378847812 1.321855559 0.101903278 0.024006192 2.59E-10 9.586596221 0.291167359 APDWVDAEECHR ddPTM_HeLa_CUDC101_4h_R1 2 APDWVDAEECHR 12 0 I3L1P5;O14964-2;O14964 I3L1P5 HGS Hepatocyte growth factor-regulated tyrosine kinase substrate 0 0 ; ; 134.56 0.0013128 17269800 12447.4 11612.5 11784.2 11310.4 11645.9 10944.4 10716.5 11243.7 10883 9686.5 FALSE FALSE TRUE 10988.33464 11970.26736 12421.2895 11771.687 10786.80516 10735.6538 11129.83899 12523.63736 10434.39813 9628.884267 1.141184621 1.24316245 1.29000299 1.222539047 1.120254939 1.114942657 1.155880441 1.300632245 1.083655992 1 13.23315292 -8.388336752 0.819568373 1.014353132 1.199326288 0.468099068 0.066200178 0.307316142 0.433732205 0.027222029 0.015221112 4.09E-09 8.388336752 0.184973156 GPS(ph)PS(ph)SPTPPAAAAPAEQAPR ddPTM_HeLa_CUDC101_4h_R1 1 GPSPSSPTPPAAAAPAEQAPR 21 0 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 2 0 GPS(0.997)PS(0.615)S(0.369)PT(0.019)PPAAAAPAEQAPR 86.179 0.0095253 61872000 1423.4 1453.8 1438.1 1273.2 1210.6 1429.5 1689.5 1266.2 1410.4 1640.1 TRUE FALSE FALSE 1256.55121 1498.589855 1515.848036 1325.126599 1121.29645 1402.234669 1754.664581 1410.33909 1352.262715 1630.344612 0.770727367 0.919185946 0.929771549 0.812789265 0.687766526 0.86008483 1.076253798 0.865055817 0.82943367 1 10.67096123 -9.58633146 1.379713057 0.999867927 0.855122947 0 0.110635968 0.553990891 1.894129657 0.073866068 0.017256073 2.59E-10 9.58633146 -0.14474498 GRDS(ph)PYQSR ddPTM_HeLa_CUDC101_4h_R1 2 GRDSPYQSR 9 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 GRDS(1)PYQSR;GRDS(0.997)PYQS(0.003)R ; 77.387 0.027817 83067000 1660.43 812.33 1903.41 2069.94 1000.36 862.33 951.04 528.47 1754.46 2374.54 TRUE FALSE FALSE 1465.796912 837.3569245 2006.314102 2154.3611 926.5654358 845.882492 987.7219314 588.6288887 1682.140416 2360.41613 0.620990889 0.354749704 0.84998322 0.912703939 0.392543257 0.358361596 0.418452458 0.249375049 0.712645704 1 11.20482551 -9.585779741 0.101270053 1.760736348 2.65E-17 0.388217119 0.199288415 22.00389296 0.516219035 6.95050837 2.606872981 2.60E-10 9.585779741 -1.760736348 FEINLIS(ph)PDTK ddPTM_HeLa_CUDC101_4h_R1 2 FEINLISPDTK 11 0 A0A3B3IRT3;O60343-2;O60343-3;O60343 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 0 FEINLIS(0.953)PDT(0.047)K;FEINLIS(0.963)PDT(0.037)K ; 120.14 0.0042126 19375900 4790.2 4672 4506.7 4037.6 4910.7 4928 4317 4021.2 5324.2 5028.3 TRUE FALSE FALSE 4228.700017 4815.938782 4750.345834 4202.27078 4548.447444 4834.006611 4483.508136 4478.957154 5104.734222 4998.391448 0.846012174 0.963497724 0.950374912 0.840724626 0.90998224 0.967112452 0.896990198 0.896079709 1.021275399 1 12.28724817 -9.585658588 1.372690792 1.000009752 0.902525934 0.466525221 0.042466239 0.353983595 1.196000154 0.031723036 0.007380402 2.60E-10 9.585658588 -0.097483818 SQSSDT(ph)EQQSPT(ph)SGGGK ddPTM_HeLa_CUDC101_4h_R1 1 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 SQS(0.033)S(0.173)DT(0.793)EQQS(0.074)PT(0.846)S(0.08)GGGK 164.58 0.00033044 90563000 5064.6 4495.4 4786.3 4221.7 4770.3 4212.9 5006.3 4517.8 5380.2 4944.4 TRUE FALSE FALSE 4470.935265 4633.897946 5045.061856 4393.879174 4418.404473 4132.545952 5199.394668 5032.08809 5158.425879 4914.990489 0.909652882 0.942809138 1.026464215 0.893975112 0.89896501 0.840804466 1.057864645 1.023824584 1.049529168 1 12.26297291 -9.585611573 1.384340902 0.999892098 0.942920349 0.137965531 0.067346113 0.894624371 3.084165399 0.046979915 0.011026391 2.60E-10 9.585611573 -0.056971749 EIS(ph)IMQQCDS(ph)PY(ph)VVKY(ph)YGSYFK ddPTM_HeLa_CUDC101_4h_R1 1 EISIMQQCDSPYVVKYYGSYFK 22 1 E5RFQ9;A0A087WZ06;Q13188;Q13188-2;Q8NBU1 E5RFQ9 STK3 Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit 4 0 EIS(0.998)IMQQCDS(0.849)PY(0.531)VVKY(0.601)Y(0.601)GS(0.213)Y(0.205)FK 46.027 0.0028604 0 136.07 220.27 292.43 204.41 148.22 285.94 174.3 132.45 216.87 325.15 TRUE FALSE FALSE 120.1200809 227.0562576 308.2396504 212.7467233 137.2861059 280.4861709 181.0228094 147.5275726 207.9305268 323.2159933 0.371640276 0.702490787 0.953664598 0.658218429 0.424750349 0.867797933 0.560067611 0.456436487 0.643317568 1 8.336354777 -9.584929326 1.3779856 0.99960927 0.602354571 0.017865302 0.2071405 0.370547942 1.263888571 0.13543067 0.031672406 2.60E-10 9.584929326 -0.3972547 S(ph)SPGSVAAS(ph)PSGGGGR ddPTM_HeLa_CUDC101_4h_R1 1 SSPGSVAASPSGGGGR 16 0 Q9BXB5-2;Q9BXB5 Q9BXB5-2 OSBPL10 Oxysterol-binding protein-related protein 10 2 0 S(0.943)S(0.057)PGS(0.078)VAAS(0.854)PS(0.068)GGGGR 119.96 0.0053512 5723600 2709.3 3023.2 3014.1 3161.6 3428.1 3621.1 3061.3 1492.5 3907 3856.4 TRUE FALSE FALSE 2391.719961 3116.341209 3177.051363 3290.543714 3175.215893 3552.033551 3179.375366 1662.400167 3745.951806 3833.461961 0.623906011 0.812931298 0.828768198 0.858373905 0.828289396 0.926586356 0.82937444 0.433655057 0.97717203 1 11.90443215 -9.584326835 1.382130104 0.999549705 0.76207874 0.302004189 0.134007541 0.444298402 1.526689234 0.097128186 0.022808255 2.60E-10 9.584326835 -0.237470965 SPGSTPT(ph)TPTSSQAPQK ddPTM_HeLa_CUDC101_4h_R1 2 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 SPGS(0.021)T(0.144)PT(0.481)T(0.333)PT(0.017)S(0.003)S(0.001)QAPQK;SPGSTPT(0.494)T(0.494)PT(0.004)S(0.007)S(0.002)QAPQK ; 209.89 4.92E-23 39021200 5129.3 4747.9 4396.5 5054.8 4765.3 4438.5 4523 5243.3 5248.4 5209.9 TRUE FALSE FALSE 4528.05123 4894.177171 4634.188089 5260.956593 4413.773313 4353.843008 4697.453625 5840.176078 5032.058731 5178.911283 0.874324927 0.945020469 0.894818976 1.015842193 0.852258915 0.840686926 0.907034967 1.127684133 0.971644127 1 12.33843313 -9.583404048 1.380913318 0.99984247 0.920431317 0.046388833 0.082005748 0.757565494 2.59867007 0.055335267 0.013002586 2.61E-10 9.583404048 -0.079411153 GSDDAPYSPT(ph)AR ddPTM_HeLa_CUDC101_4h_R1 1 GSDDAPYSPTAR 12 0 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 GSDDAPYSPT(1)AR 217.2 1.30E-23 17139000 2362.4 2586.5 2751.6 2552.9 3051.8 2635.3 2281.8 1914.9 3056.7 3216.6 TRUE FALSE FALSE 2085.483053 2666.186999 2900.359819 2657.018297 2826.674794 2585.036043 2369.80979 2132.884476 2930.701532 3197.46752 0.652229629 0.833843341 0.907080307 0.830975852 0.884035499 0.808463582 0.741152107 0.667054305 0.916569602 1 11.64271399 -9.582886558 1.376538501 0.999706934 0.779528468 0.377246633 0.083306164 0.324979749 1.106628199 0.065729814 0.015408166 2.61E-10 9.582886558 -0.220178466 SAAVETASLSPS(ph)LVPAR ddPTM_HeLa_CUDC101_4h_R1 1 SAAVETASLSPSLVPAR 17 0 Q2KHT3-3;Q2KHT3 Q2KHT3-3 CLEC16A Protein CLEC16A 1 0 SAAVETAS(0.001)LS(0.104)PS(0.895)LVPAR 183.75 7.10E-11 40792000 1612.5 1578.2 1564.6 1643.5 1712.8 1606.6 1562.4 1186.7 1964.3 1798.3 TRUE FALSE FALSE 1423.485194 1626.822471 1649.187009 1710.529034 1586.450156 1575.956782 1622.662291 1321.789131 1883.330723 1787.603632 0.796309187 0.910057712 0.922568616 0.956883844 0.887473111 0.881603032 0.907730474 0.739419583 1.053550513 1 10.80381117 -9.582667486 1.375791891 0.999838023 0.870827997 0.462886647 0.063133246 0.379165527 1.289593333 0.044921305 0.010528307 2.61E-10 9.582667486 -0.129010026 GPAGEAGAS(ph)PPVR ddPTM_HeLa_CUDC101_4h_R1 1 GPAGEAGASPPVR 13 0 Q13425;A0A140TA73;Q13425-2 Q13425 SNTB2 Beta-2-syntrophin 1 0 GPAGEAGAS(1)PPVR 92.906 0.014613 65271000 2428.1 2447.5 3015.4 3243.8 2589.4 2780.4 2260.9 1853.1 3171.8 3307.7 TRUE FALSE FALSE 2143.481799 2522.904574 3178.421645 3376.096185 2398.385121 2727.368502 2348.10367 2064.049414 3041.057062 3288.025653 0.651905437 0.767300757 0.966665708 1.026785233 0.729430173 0.829485165 0.71413788 0.627747357 0.924888484 1 11.68300584 -9.582009974 1.380979275 0.999487245 0.779337224 0.234714133 0.122166061 0.460849659 1.58193172 0.093244641 0.021962894 2.62E-10 9.582009974 -0.220150021 DPPSLSSAS(ph)PPGSR ddPTM_HeLa_CUDC101_4h_R1 1 DPPSLSSASPPGSR 14 0 A0A1B0GTL5 A0A1B0GTL5 1 0 DPPS(0.003)LS(0.012)S(0.04)AS(0.87)PPGS(0.075)R 89.26 0.0029559 0 1252 1470 1190 1390.7 1006.6 1013.7 1096.1 1267.2 1570.2 1712.7 TRUE FALSE FALSE 1105.242458 1515.288958 1254.335 1447.418757 932.3451234 994.3653614 1138.376944 1411.452926 1505.475691 1702.512784 0.649183059 0.890030884 0.736755113 0.850166161 0.547628853 0.584057501 0.668645167 0.829041014 0.884266894 1 10.73344992 -9.581728669 0.661780622 1.067441617 0.707560031 0.36387134 0.112769674 0.884665176 0.478203703 0.199343444 0.023170319 2.62E-10 9.581728669 -0.359881586 TAAILHGGS(ph)PDFVGNGK ddPTM_HeLa_CUDC101_4h_R1 1 TAAILHGGSPDFVGNGK 17 0 H0YME5;Q9P2K8-2;Q9P2K8;Q9P2K8-3 H0YME5 EIF2AK4 Eukaryotic translation initiation factor 2-alpha kinase 4 1 0 TAAILHGGS(1)PDFVGNGK 216.01 2.78E-24 18429000 5783.4 4170.3 4031.1 4193 4474.6 6217.5 5605.7 3286.4 4357.2 4254.7 TRUE FALSE FALSE 5105.478619 4298.782 4249.033459 4364.008664 4144.517673 6098.911547 5821.913727 3660.510492 4177.594372 4229.392855 1.207142205 1.016406408 1.004643835 1.031828637 0.979932065 1.44203004 1.376536521 0.865493137 0.987752738 1 12.04623486 -9.580258466 1.346466492 0.999575053 1.13230081 0.066517368 0.171993061 1.037073832 3.353757928 0.125352012 0.028849529 2.63E-10 9.580258466 0.132725757 ESSANNSVS(ph)PSESLR ddPTM_HeLa_CUDC101_4h_R1 5 ESSANNSVSPSESLR 15 0 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 ESSANNS(0.008)VS(0.876)PS(0.115)ESLR;ESSANNS(0.204)VS(0.791)PS(0.005)ESLR;ESSANNS(0.037)VS(0.962)PS(0.001)ESLR;ESSANNS(0.006)VS(0.994)PSESLR;ESSANNS(0.003)VS(0.919)PS(0.077)ES(0.001)LR ;;;; 346.18 1.72E-217 932580000 9038.9 7781.3 7450.1 7707.6 8703.7 7710.8 7271.7 7375.5 8616.2 8762.9 TRUE FALSE FALSE 7979.373844 8021.03263 7852.874941 8021.949243 8061.645391 7563.729337 7552.171905 8215.097107 8261.036589 8710.777881 0.91603459 0.920817031 0.901512477 0.920922259 0.925479389 0.868318472 0.866991675 0.943095694 0.94836956 1 13.08858584 -9.579927079 0.334779076 1.050415217 0.896057545 0.435308622 0.0277072 1.544387185 0.191455231 0.091280613 0.010113651 2.63E-10 9.579927079 -0.154357672 NTGVSPASRPSPGTPTS(ph)PSNLTSGLK ddPTM_HeLa_CUDC101_4h_R1 1 NTGVSPASRPSPGTPTSPSNLTSGLK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 NTGVSPASRPS(0.001)PGT(0.001)PT(0.407)S(0.556)PS(0.025)NLT(0.004)S(0.006)GLK 71.78 0.00018552 114020000 1975.3 1241.7 1679.2 1604.7 1483.1 1554.9 1469.6 1879.9 1616 1412.9 TRUE FALSE FALSE 1743.758328 1279.955305 1769.982631 1670.146602 1373.694668 1525.242873 1526.282964 2093.900217 1549.387796 1404.496008 1.241554492 0.911327122 1.260226175 1.189143004 0.978069471 1.085971668 1.086712213 1.490855229 1.103162834 1 10.45583681 -9.579249679 1.334981379 0.999220939 1.154739055 0.05221718 0.15553213 0.751163843 2.380805339 0.106022536 0.02422627 2.63E-10 9.579249679 0.155518115 QVVSVVQDEEVGLPFEAS(ph)PESPPPASPDGVTEIR ddPTM_HeLa_CUDC101_4h_R1 1 QVVSVVQDEEVGLPFEASPESPPPASPDGVTEIR 34 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 QVVSVVQDEEVGLPFEAS(0.966)PES(0.025)PPPAS(0.009)PDGVTEIR 97.106 1.12E-10 0 541.07 442.93 303.8 443.45 351.25 475.31 403.66 352.21 383.25 327.35 TRUE FALSE FALSE 477.6465948 456.5761483 320.2243469 461.5358078 325.3389873 466.2442537 419.2293014 392.3041627 367.4522728 325.4029076 1.467862098 1.403110229 0.984085696 1.418351825 0.999803566 1.432821412 1.288339138 1.205595136 1.129222463 1 8.346083332 -9.578665426 1.383627588 1.001100435 1.297219188 0.179868249 0.16786639 0.415132857 1.433442116 0.112821637 0.0267757 2.64E-10 9.578665426 0.296118753 ACPGPPPPS(ph)PEPLAR ddPTM_HeLa_CUDC101_4h_R1 2 ACPGPPPPSPEPLAR 15 0 A0A087WSV0;Q9HB09-3;Q9HB09 A0A087WSV0 BCL2L12 Bcl-2-like protein 12 1 0 ACPGPPPPS(1)PEPLAR;ACPGPPPPS(1)PEPLAR ; 192.54 8.31E-12 30529000 8153.9 6774.1 5128.4 5458.8 5508.1 5793.9 6139 5334.2 5295.7 4406.4 TRUE FALSE FALSE 7198.112203 6982.801992 5405.656817 5681.433459 5101.778437 5683.391011 6375.783286 5941.423766 5077.409005 4380.190537 1.643333125 1.594177681 1.234114537 1.297074502 1.164738929 1.297521412 1.455594964 1.356430438 1.159175374 1 12.09677791 -9.57785643 1.388454669 1.001937066 1.408603742 0.364173348 0.151337353 0.32060833 1.116587693 0.11973237 0.028555566 2.64E-10 9.57785643 0.406666676 APGTPHSHTKPYVR ddPTM_HeLa_CUDC101_4h_R1 1 APGTPHSHTKPYVR 14 1 H0YHA7;J3QQ67;Q07020-2;Q07020;F8VYV2;F8VUA6 H0YHA7 RPL18 60S ribosomal protein L18 0 0 106.26 0.0016483 5945100 3417.4 1921.8 3009.6 2323.6 2979.6 2792.5 2291.6 2891 2886.7 2461.9 FALSE FALSE TRUE 3016.817552 1981.00838 3172.30808 2418.366451 2759.800844 2739.237715 2379.98778 3220.099754 2767.709004 2447.256509 1.232734509 0.8094813 1.296271179 0.98819492 1.127712127 1.119309604 0.972512595 1.315799853 1.130943566 1 11.25694961 -9.753170698 1.700370327 0.999870642 1.121073645 0 0.152873557 0.752876488 3.933388606 0.100118218 0.021473045 1.77E-10 9.753170698 0.121203003 LPQSSSSESSPPSPQPT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 LPQSSSSESSPPSPQPTK 18 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 LPQSSSSESS(0.006)PPS(0.46)PQPT(0.534)K 129.06 6.72E-05 0 0 75.389 350.94 201.88 123.28 239.64 329.28 0 156.11 431.58 TRUE FALSE FALSE 0 77.71164573 369.9128779 210.113539 114.18588 235.0692663 341.9804399 0 149.6750797 429.012943 0 0.181140562 0.862241767 0.489760373 0.266159522 0.547930477 0.797133153 0 0.348882434 1 8.744877363 -9.576824388 1.380007306 0.997715509 0.363414862 0 0.343304236 0.361931218 1.24291705 0.210295165 0.049928294 2.65E-10 9.576824388 -0.634300647 REEQTDT(ph)SDGESVTHHIR ddPTM_HeLa_CUDC101_4h_R1 1 REEQTDTSDGESVTHHIR 18 1 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 1 0 REEQT(0.099)DT(0.45)S(0.45)DGES(0.001)VTHHIR 69.98 0.015301 15485000 1594.9 1088 905.62 1003.6 1618.3 1481.7 1263.4 966.32 1172.5 991.6 TRUE FALSE FALSE 1407.94824 1121.51999 954.5805566 1044.531146 1498.921233 1453.439041 1312.129761 1076.321963 1124.169054 985.7019191 1.428371207 1.137788178 0.968427207 1.059682573 1.520663807 1.474521874 1.331162835 1.091934531 1.140475667 1 9.945007625 -9.575513303 1.349707409 0.999636317 1.274453324 0.110828715 0.183237402 0.557909159 1.818281663 0.139352367 0.032409849 2.66E-10 9.575513303 0.274817006 QS(ph)RPANKQSPSPSEVSQSPGR ddPTM_HeLa_CUDC101_4h_R1 1 QSRPANKQSPSPSEVSQSPGR 21 2 A0A5F9ZH11;P55201-3;P55201;P55201-2;C9JHC0;A0A5F9ZHX4;A0A5F9ZHW9;P55201-4 A0A5F9ZH11 BRPF1 Peregrin 1 0 QS(0.935)RPANKQS(0.058)PS(0.006)PS(0.001)EVSQSPGR 44.029 0.034993 3643400 754.49 772.81 972.25 841.24 1208.4 772.82 797.75 1274 1096.1 1303.1 TRUE FALSE FALSE 666.0498259 796.6193601 1024.812776 875.5494033 1119.258739 758.0797461 828.5194847 1419.02701 1050.918294 1295.349103 0.514185577 0.614984299 0.791147941 0.675917713 0.864059532 0.585232 0.639610961 1.095478436 0.811301209 1 10.33912525 -9.574755895 1.378765203 0.998777067 0.690179546 0.102766517 0.168949077 0.394974384 1.354622649 0.111484081 0.026535383 2.66E-10 9.574755895 -0.308597521 APILIATDVASR ddPTM_HeLa_CUDC101_4h_R1 1 APILIATDVASR 12 0 P17844-2;P17844;J3KTA4;A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2;A0A0U1RQJ0 P17844-2;A0A1X7SBZ2;A0A0U1RQJ0 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 0 0 123.86 0.014583 470070 256.01 166.26 0 0 194.68 67.258 137.07 0 0 152.31 FALSE FALSE TRUE 226.0008959 171.3822735 0 0 180.3188443 65.97516571 142.3568358 0 0 151.4040533 1.492700432 1.131953008 0 0 1.190977654 0.435755611 0.940244549 0 0 1 7.242260019 -6.886967406 7.553418037 1.236503324 0.468203238 0.035474761 0.552794842 0.157416477 9.918962694 0.065250698 0.085918352 1.30E-07 6.886967406 -0.768300085 APIQDIWYHEDR ddPTM_HeLa_CUDC101_4h_R1 2 APIQDIWYHEDR 12 0 J3QLR8;Q9Y3D9 J3QLR8 MRPS23 "28S ribosomal protein S23, mitochondrial" 0 0 ; ; 120.6 0.0030291 26344000 9512.2 7326.1 7084 7429.9 6918.7 6946.5 6531.9 7130 6567.9 7036.6 FALSE FALSE TRUE 8397.194336 7551.808457 7466.982468 7732.923437 6408.321285 6814.007086 6783.837571 7941.65038 6297.168382 6994.74599 1.200500254 1.079640128 1.067513027 1.105533131 0.916162116 0.974160762 0.969847594 1.135373663 0.900271202 1 12.77205595 -5.790408751 24.90188478 1.094046197 0.995045731 0.013576903 0.092604046 227.296336 195381.9071 0.013100136 0.023748842 1.62E-06 5.790408751 -0.099000467 APIRPDIVNFVHTNLR ddPTM_HeLa_CUDC101_4h_R1 1 APIRPDIVNFVHTNLR 16 1 P36578;H3BTP7;H3BU31 P36578 RPL4 60S ribosomal protein L4 0 0 97.767 0.0029297 16091000 3554.2 2892.2 2622.4 2872.2 2788.1 2836.6 2578.3 2977.3 3050.7 3591.1 FALSE FALSE TRUE 3137.582064 2981.305254 2764.174876 2989.340731 2582.427418 2782.496581 2677.745895 3316.223797 2924.948855 3569.739977 0.878938546 0.83516034 0.774335076 0.837411338 0.723421715 0.77946758 0.750123514 0.928981892 0.819373084 1 11.80160328 -8.018337918 0.590397988 0.992286113 0.78934945 0.110064637 0.075824464 0.294622408 0.23576136 0.024448266 0.015620007 9.59E-09 8.018337918 -0.202936663 APKPDGPGGGPGGSHMGGNYGDDR ddPTM_HeLa_CUDC101_4h_R1 2 APKPDGPGGGPGGSHMGGNYGDDR 24 1 H3BPE7;P35637-2;P35637 H3BPE7 FUS RNA-binding protein FUS 0 0 ; ; 67.668 0.002376 22527800 5830.2 4930.4 5027.9 4531.8 4678.8 4625.1 4003.1 4105.9 4881.4 5713.1 FALSE FALSE TRUE 5146.792794 5082.29978 5299.723483 4716.626392 4333.654245 4536.883923 4157.500908 4573.299059 4680.186626 5679.118227 0.906266182 0.894910015 0.93319478 0.830520902 0.763085759 0.798871188 0.732068033 0.805283299 0.824104454 1 12.47145123 -6.311890035 0.297768032 1.002678168 0.7028469 0.378230154 0.061946201 0.657429706 0.121766346 0.026368076 0.071681522 4.88E-07 6.311890035 -0.299831268 APKPEDIDEEDDDVPDLVENFDEASK ddPTM_HeLa_CUDC101_4h_R1 2 APKPEDIDEEDDDVPDLVENFDEASK 26 1 Q96K17-2;Q96K17 Q96K17-2 BTF3L4 Transcription factor BTF3 homolog 4 0 0 ; ; 199.89 8.80E-23 50016000 3256.3 2639.2 2685.1 2959.4 2233.9 2782.3 2698.2 2233.4 2949.4 3195.2 FALSE FALSE TRUE 2874.60145 2720.510624 2830.264628 3080.097124 2069.109648 2729.232263 2802.270478 2487.641228 2827.824484 3176.194808 0.905045699 0.856531412 0.891086599 0.969744398 0.651442929 0.859277352 0.88227286 0.783214311 0.890318338 1 11.63308369 -7.898039684 0.259012845 1.039200527 0.791071444 0.202202372 0.082187708 1.51390386 0.329222596 0.148508746 0.095454259 1.26E-08 7.898039684 -0.248129082 APKPEDIDEEDDDVPDLVENFDEASKNEAN ddPTM_HeLa_CUDC101_4h_R1 1 APKPEDIDEEDDDVPDLVENFDEASKNEAN 30 2 Q96K17-2;Q96K17 Q96K17-2 BTF3L4 Transcription factor BTF3 homolog 4 0 0 117.11 1.02E-11 27492000 1838.8 1738.6 1839.1 1670.5 2238.3 2079.5 1985.3 1872.4 2034.2 2344.6 FALSE FALSE TRUE 1623.258651 1792.164205 1938.527309 1738.630211 2073.185068 2039.837002 2061.873686 2085.546447 1950.349415 2330.654215 0.696481975 0.768953281 0.831752431 0.745983767 0.889529238 0.875220781 0.88467593 0.894833062 0.836824872 1 11.18651926 PLNELMES(ph)EGKTVLS(ph)KMMGSPK ddPTM_HeLa_CUDC101_4h_R1 1 PLNELMESEGKTVLSKMMGSPK 22 2 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 2 0 PLNELMES(0.977)EGKT(0.025)VLS(0.5)KMMGS(0.498)PK 46.362 0.0031203 0 314.31 292.34 440.03 375.6 288.67 478.27 440.34 234.79 368.93 495.27 TRUE FALSE FALSE 277.4670583 301.3466489 463.8193528 390.9185915 267.3753892 469.1477966 457.3240613 261.5175445 353.7225492 492.324112 0.563586165 0.612089966 0.942101639 0.794026906 0.543088146 0.952924679 0.928908518 0.531189796 0.718474965 1 8.943464588 -9.574745947 1.379417424 0.998868622 0.721713116 0 0.180901533 0.452270414 1.552874088 0.114665954 0.02730637 2.66E-10 9.574745947 -0.277155506 AQSGSDS(ph)SPEPK ddPTM_HeLa_CUDC101_4h_R1 2 AQSGSDSSPEPK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQSGS(0.008)DS(0.496)S(0.496)PEPK;AQS(0.11)GS(0.061)DS(0.677)S(0.152)PEPK ; 89.747 0.021828 9321200 8532.8 3062.5 8143.2 8354 3860.5 4205.4 3657.3 1911.22 9276.9 12704.2 TRUE FALSE FALSE 7532.598119 3156.851995 8583.446024 8694.712229 3575.718606 4125.189002 3798.363286 2128.785559 8894.502255 12628.63485 0.596469706 0.249975712 0.679681226 0.688491854 0.283143716 0.326653597 0.300773863 0.168568146 0.704312252 1 13.62441107 -9.574101052 0.13480582 1.739149264 1.61E-13 0.555809757 0.170959853 7.764046501 0.254599688 2.804003954 0.802475714 2.67E-10 9.574101052 -1.739149264 SCS(ph)FSSESR ddPTM_HeLa_CUDC101_4h_R1 2 SCSFSSESR 9 0 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7;X6RAE7 Q5VZ89-5 DENND4C DENN domain-containing protein 4C 1 0 S(0.003)CS(0.99)FS(0.006)SESR;SCS(0.995)FS(0.004)SESR ; 169.58 3.45E-07 124301000 7076.5 4846.4 4832.4 4812.9 5477.1 5610.6 5243.6 5335.3 3991.6 4147.1 TRUE FALSE FALSE 6247.003397 4995.71184 5093.654161 5009.190865 5073.065245 5503.587153 5445.847408 5942.648986 3827.064559 4122.432865 1.515368134 1.211835827 1.235594206 1.215105504 1.230599845 1.335033785 1.321027555 1.4415393 0.928350972 1 12.00928028 -9.573063108 1.357299969 1.00023538 1.330341127 0.649018504 0.100569497 0.269830661 0.892164577 0.080986675 0.01902251 2.67E-10 9.573063108 0.330105747 APLATGEDDDDEVPDLVENFDEASK ddPTM_HeLa_CUDC101_4h_R1 3 APLATGEDDDDEVPDLVENFDEASK 25 0 P20290;P20290-2 P20290 BTF3 Transcription factor BTF3 0 0 ;; ;; 133.95 6.08E-11 96246400 11938.1 10161.7 9176.5 8614.3 8822.7 9671.2 8384.7 7809.1 10212.1 11064.1 FALSE FALSE TRUE 10538.73401 10474.76993 9672.609347 8965.628388 8171.866998 9486.737973 8708.100688 8698.056379 9791.152916 10998.29024 0.958215667 0.952399846 0.87946482 0.815183832 0.743012488 0.862564796 0.791768584 0.790855323 0.890243183 1 13.42499164 -6.608840299 1.575611401 0.981006822 0.798129305 0.739476251 0.040678055 0.084148827 0.421906494 0.005111991 0.008003867 2.46E-07 6.608840299 -0.182877517 APLATGEDDDDEVPDLVENFDEASKNEAN ddPTM_HeLa_CUDC101_4h_R1 5 APLATGEDDDDEVPDLVENFDEASKNEAN 29 1 P20290;P20290-2 P20290 BTF3 Transcription factor BTF3 0 0 ;;;; ;;;; 139.47 2.54E-16 584245200 11603.35 12164 10501.54 10838.01 12519.99 11196.8 10598.8 11928.58 12722.59 12590.1 FALSE FALSE TRUE 10243.2229 12538.75842 11069.28502 11280.03089 11596.41528 10983.2397 11007.59927 13286.48133 12198.15946 12515.21353 0.818461697 1.001881302 0.884466333 0.901305509 0.926585492 0.877591075 0.879537472 1.06162642 0.974666507 1 13.61139528 -4.253444897 24.23512854 0.91230403 1.061626534 0.363738613 0.056381413 651.2432275 1974159.667 0.009569398 0.137725463 5.58E-05 4.253444897 0.149322504 APLK(ac)IFAQDGEGQR ddPTM_HeLa_CUDC101_4h_R1 2 APLKIFAQDGEGQR 14 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 1 ; APLK(1)IFAQDGEGQR;APLK(1)IFAQDGEGQR 136.7 0.0025271 645700 0 204.161 0 51.875 0 0 0 0 69.847 0 FALSE TRUE FALSE 0 210.4509584 0 53.99068672 0 0 0 0 66.9678771 0 0 IKWDEQTSNTKGDDDEES(ph)DEEAVK ddPTM_HeLa_CUDC101_4h_R1 1 IKWDEQTSNTKGDDDEESDEEAVK 24 2 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 IKWDEQTSNT(0.001)KGDDDEES(0.999)DEEAVK 80.56 8.87E-05 11592000 2694.3 3588.2 3506.6 2773.2 3348.6 3304.3 3199.2 2902 3132.8 4444.8 TRUE FALSE FALSE 2378.478238 3698.748189 3696.177403 2886.303083 3101.580449 3241.275983 3322.594216 3232.35195 3003.664658 4418.362132 0.538316726 0.837131063 0.836549222 0.653251815 0.701975157 0.733592197 0.751996807 0.731572436 0.679814051 1 12.10929595 -9.572805561 1.353830531 0.999949887 0.703824123 0 0.12768589 0.257585613 0.846589141 0.069286039 0.016238428 2.67E-10 9.572805561 -0.296125764 GVELCFPENET(ph)PPEGK ddPTM_HeLa_CUDC101_4h_R1 1 GVELCFPENETPPEGK 16 0 A0A590UJ01;Q13535-2;Q13535-3;Q13535 A0A590UJ01 ATR Serine/threonine-protein kinase ATR 1 0 GVELCFPENET(1)PPEGK 127.29 0.0024257 11355000 5087.8 3537.2 3478.8 3708.5 4286.4 5011 4222.2 5974.9 4108.2 1623.1 TRUE FALSE FALSE 4491.415797 3646.176939 3666.874451 3859.74866 3970.200812 4915.423524 4385.051668 6655.058465 3938.858257 1613.445729 2.783741477 2.259869591 2.272697733 2.392239534 2.460696843 3.046537876 2.717817891 4.124748881 2.441270993 1 10.65592934 -9.572778946 0.244209828 2.92E-40 3.154187767 0.324545838 0.604915863 3.226849019 0.2360117 3.094765535 0.456891799 2.67E-10 9.572778946 3.154187767 WQRPS(ph)SPPPFLPAASEEAEPAEGLR ddPTM_HeLa_CUDC101_4h_R1 3 WQRPSSPPPFLPAASEEAEPAEGLR 25 1 H3BLU1;Q4KMQ1;Q4KMQ1-2;Q4KMQ1-4;Q4KMQ1-3 H3BLU1 TPRN Taperin 1 0 WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR;WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR;WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR ;; 123.36 3.36E-10 145128000 2948.04 2886.87 2732.33 2851.01 3465.6 2969.69 2506.87 2357.46 2576.77 3251.75 TRUE FALSE FALSE 2602.47522 2975.811043 2880.048025 2967.286511 3209.949592 2913.048111 2603.560816 2625.823717 2470.55445 3232.408446 0.805119546 0.920617271 0.890991368 0.917980064 0.993051975 0.901200501 0.805455393 0.812342797 0.764307633 1 11.65839379 -9.572592059 1.357478311 0.999890304 0.875046044 0 0.092291795 0.398733292 1.319035577 0.045249994 0.010638321 2.68E-10 9.572592059 -0.12484426 APPEAPHPGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 APPEAPHPGKR 11 1 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2 A0A669KBI3 AFF1 AF4/FMR2 family member 1 0 1 ; APPEAPHPGK(1)R;APPEAPHPGK(1)R 106.62 0.0052221 2924400 916.34 823.44 1331.85 1246.05 1194.83 1116.7 1047.68 971.41 790.97 1036.67 FALSE TRUE FALSE 808.9280143 848.8092104 1403.85384 1296.869305 1106.689771 1095.400808 1088.089369 1081.991388 758.3658818 1030.503841 0.784983017 0.823683694 1.362298503 1.258480807 1.073930759 1.062975959 1.055880944 1.049963469 0.735917569 1 10.00913417 -6.787501539 24.9999976 0.89001861 1.138266459 0.605705065 0.118452691 147.5670676 141552.4315 0.02103573 0.027651367 1.63E-07 6.787501539 0.24824785 APPPESWNTVSGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 APPPESWNTVSGKK 14 1 Q01804-5;Q01804-3;Q01804;D6RI06 Q01804-5 OTUD4 OTU domain-containing protein 4 0 1 ; APPPESWNTVSGK(1)K;APPPESWNTVSGK(1)K 159.5 0.00013478 5814200 2214.46 2618.5 2390.8 2388.5 3055.7 2463.1 2395.88 3123.5 1977.36 1860.59 FALSE TRUE FALSE 1954.884356 2699.172881 2520.05388 2485.913354 2830.287099 2416.120471 2488.289894 3479.066614 1895.852384 1849.523128 1.056966699 1.459388553 1.362542507 1.344083411 1.530279376 1.306347801 1.345368358 1.881061427 1.025049298 1 10.85293763 -7.284553009 5.087079073 1.025245263 1.44614126 0.616920752 0.156457485 0.087887344 6.601195427 0.025348363 0.029499016 5.19E-08 7.284553009 0.420895997 NSSS(ph)PVSPASVPGQR ddPTM_HeLa_CUDC101_4h_R1 2 NSSSPVSPASVPGQR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 NS(0.019)S(0.146)S(0.818)PVS(0.017)PASVPGQR;NS(0.006)S(0.038)S(0.95)PVS(0.006)PASVPGQR ; 120.54 0.00091925 66313000 3906.6 3857.2 3805.1 3396 3786.1 3964.8 3835.4 3717.3 4002.9 4355.6 TRUE FALSE FALSE 3448.67427 3976.03576 4010.815216 3534.503559 3506.806946 3889.178046 3983.332663 4140.462406 3837.898768 4329.692697 0.7965171 0.918318236 0.926351013 0.816340513 0.809943613 0.898257294 0.920003552 0.956294752 0.886413664 1 12.08004892 -9.572223377 1.355813635 0.99990923 0.869457223 0.007908379 0.063067757 0.350431817 1.156043703 0.041529607 0.009757354 2.68E-10 9.572223377 -0.130452007 NYSVGSRPLKPLS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 1 NYSVGSRPLKPLSPLR 16 2 O60825 O60825 PFKFB2 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 1 0 NYSVGSRPLKPLS(1)PLR 73.722 0.02197 37267000 2374 1500.3 732.53 1493.2 1616.3 1592.3 1419.7 1273.4 801.43 590.07 TRUE FALSE FALSE 2095.723319 1546.522465 772.1327876 1554.09915 1497.068769 1561.92953 1474.458305 1418.358709 768.3947162 586.5602374 3.57290383 2.636596152 1.316374241 2.6495133 2.552284785 2.662862961 2.513737227 2.418095565 1.310001373 1 9.196135465 -9.5715177 1.36225762 1.003296168 2.649726814 0.516074282 0.526802829 0.283358228 0.945656502 0.424285046 0.100289611 2.68E-10 9.5715177 1.646430646 SS(ph)LS(ph)GDEEDELFK ddPTM_HeLa_CUDC101_4h_R1 1 SSLSGDEEDELFK 13 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 2 0 S(0.382)S(0.618)LS(1)GDEEDELFK 161.21 0.00050571 60078000 5402.8 4992.9 4529.7 4984.7 5229.1 4910.1 4707.5 4718.1 5227.7 5256.7 TRUE FALSE FALSE 4769.491974 5146.725331 4774.589284 5187.997612 4843.359711 4816.448023 4889.069852 5255.189433 5012.211993 5225.432915 0.912745805 0.984937596 0.913721286 0.992835942 0.926882 0.921731865 0.935629628 1.005694556 0.959195549 1 12.35133485 -9.571428677 1.347622205 1.000030623 0.943903511 0.048284298 0.034767664 0.435821852 1.417580623 0.022168621 0.00518301 2.68E-10 9.571428677 -0.056127112 RVVLGDGVQLPPGDYSTT(ph)PGGTLFS(ph)TTPGGTR ddPTM_HeLa_CUDC101_4h_R1 3 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 RVVLGDGVQLPPGDY(0.022)S(0.213)T(0.169)T(0.462)PGGT(0.21)LFS(0.299)T(0.299)T(0.299)PGGT(0.028)R;RVVLGDGVQLPPGDY(0.049)S(0.046)T(0.168)T(0.566)PGGT(0.209)LFS(0.611)T(0.149)T(0.149)PGGT(0.053)R;RVVLGDGVQLPPGDY(0.001)S(0.009)T(0.277)T(0.696)PGGT(0.062)LFS(0.314)T(0.314)T(0.314)PGGT(0.013)R ;; 82.234 1.25E-07 345024000 8432.6 7877.7 7429.3 7086.8 8736.3 7572.6 7212.6 7237.2 8886.6 8189.6 TRUE FALSE FALSE 7444.143411 8120.4026 7830.95043 7375.830336 8091.840554 7428.165272 7490.792398 8061.053594 8520.290587 8140.887895 0.91441419 0.997483653 0.961928297 0.906022836 0.993975185 0.912451488 0.920144399 0.990193416 1.046604584 1 12.99097044 -9.57121065 1.332937662 1.000172213 0.944817369 0.337444037 0.037504046 0.475600052 1.50710813 0.023771074 0.005497186 2.68E-10 9.57121065 -0.055354845 APQCLGK(ac)FIEIAAR ddPTM_HeLa_CUDC101_4h_R1 1 APQCLGKFIEIAAR 14 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;A0A1X7SBS1;Q5RI18;A0A1W2PQL0;A0A1W2PP34;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQD4;A0A1W2PPE9 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 1 APQCLGK(1)FIEIAAR 101.38 0.013843 2465200 0 164.45 178.56 170.27 60.808 0 0 0 243.74 0 FALSE TRUE FALSE 0 169.5165096 188.2134937 177.2143466 56.32231499 0 0 0 233.692934 0 0 LTPVS(ph)PESSSTEEK ddPTM_HeLa_CUDC101_4h_R1 4 LTPVSPESSSTEEK 14 0 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 LT(0.011)PVS(0.951)PES(0.018)S(0.018)S(0.002)TEEK;LT(0.007)PVS(0.733)PES(0.199)S(0.043)S(0.009)T(0.009)EEK;LT(0.08)PVS(0.918)PES(0.002)SSTEEK;LT(0.053)PVS(0.89)PES(0.022)S(0.034)S(0.001)TEEK ;;; 196.18 2.06E-16 1961544000 12308.7 12181.2 11481.3 10801.1 12289.7 12125.6 11437.9 10099.7 11940.7 12947.9 TRUE FALSE FALSE 10865.89284 12556.48833 12102.01381 11241.61554 11383.11332 11894.32438 11879.06363 11249.40902 11448.49929 12870.88531 0.844222645 0.97557301 0.940262733 0.87341432 0.884407952 0.924126359 0.922940679 0.874019832 0.889488098 1 13.65182367 -9.570357485 1.338030568 1.000196459 0.899591995 0 0.049402177 0.313650234 1.003388936 0.028513028 0.006629296 2.69E-10 9.570357485 -0.100604463 EEPLS(ph)EEEPCTSTAIASPEK ddPTM_HeLa_CUDC101_4h_R1 2 EEPLSEEEPCTSTAIASPEK 20 0 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 EEPLS(1)EEEPCTSTAIASPEK;EEPLS(1)EEEPCTSTAIASPEK ; 180.64 8.22E-10 34186000 18802.1 14362.3 14280.8 14667.8 13146.7 15926.7 14570.8 11039.3 13622.4 11903.7 TRUE FALSE FALSE 16598.14634 14804.78544 15052.86325 15266.01628 12176.89413 15622.92473 15132.80064 12295.96929 13060.87891 11832.89626 1.402712064 1.251154841 1.272119937 1.290133535 1.029071316 1.320295926 1.278875459 1.039134377 1.103777014 1 13.53051562 -9.570269713 1.366944765 1.000814794 1.258240548 0.2560023 0.116385163 0.346808794 1.167484757 0.081221525 0.019306191 2.69E-10 9.570269713 0.257425754 QLMEQDASS(ph)SPSAQVIGLK ddPTM_HeLa_CUDC101_4h_R1 2 QLMEQDASSSPSAQVIGLK 19 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 QLMEQDAS(0.02)S(0.486)S(0.486)PS(0.007)AQVIGLK;QLMEQDAS(0.075)S(0.461)S(0.461)PS(0.003)AQVIGLK ; 183.39 2.71E-11 14101100 5770.8 4656.3 4325.2 3866.58 5078.5 5470.9 4717 3566.74 4314 4130.74 TRUE FALSE FALSE 5094.355572 4799.755084 4559.033395 4024.275845 4703.869173 5366.551698 4898.93627 3972.763264 4136.175094 4106.170175 1.240658656 1.168912851 1.110288469 0.980055788 1.145561185 1.306948195 1.193067034 0.967510623 1.007307276 1 12.0035777 -9.56971754 1.364878206 1.00045087 1.154461861 0.215304294 0.09994158 0.518319381 1.738982921 0.072565571 0.017237803 2.69E-10 9.56971754 0.154010991 DGSGGASGTLQPSSGGGS(ph)SNSRER ddPTM_HeLa_CUDC101_4h_R1 1 DGSGGASGTLQPSSGGGSSNSRER 24 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 DGSGGASGTLQPS(0.12)S(0.12)GGGS(0.253)S(0.253)NS(0.253)RER 54.559 0.0091357 6035300 653.91 665.92 830.09 671.76 650.69 749.66 671.41 567.64 676.55 866 TRUE FALSE FALSE 577.2596611 686.4362059 874.9671763 699.1572764 602.6898951 735.3614845 697.3065086 632.2578431 648.6623226 860.8489935 0.670570176 0.797394446 1.016400301 0.8121718 0.700111053 0.854228198 0.810021867 0.73445848 0.753514644 1 9.749616378 -9.569518962 1.355180308 0.999723253 0.788175445 0 0.117435297 0.363635562 1.199601959 0.069763195 0.016456942 2.69E-10 9.569518962 -0.211547808 APQVVAEAAK(ac)TAK ddPTM_HeLa_CUDC101_4h_R1 1 APQVVAEAAKTAK 13 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 0 1 APQVVAEAAK(1)TAK 156.81 1.04E-11 0 284.23 389.63 459.19 468.48 453.43 429.03 322.17 420.18 447.99 366.38 FALSE TRUE FALSE 250.9129903 401.6340385 484.0152004 487.5866393 419.9813723 420.8469676 334.5962048 468.0115928 429.5236626 364.2007555 0.688941433 1.102782003 1.328979122 1.33878536 1.153158982 1.15553568 0.918713648 1.285037402 1.179359615 1 8.508590105 -7.083009287 6.087064409 0.85387683 1.189053211 0.229680245 0.167783465 0.146951452 8.68936809 0.026858998 0.03308184 8.26E-08 7.083009287 0.335176381 YQDEVFGGFVTEPQEES(ph)EEEVEEPEER ddPTM_HeLa_CUDC101_4h_R1 6 YQDEVFGGFVTEPQEESEEEVEEPEER 27 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 0 YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER ;;;;; 161.51 6.35E-12 954998000 33799.4 31379.8 27706 27160.2 33014.5 30306.5 28281.4 28741.8 33305.3 32428.2 TRUE FALSE FALSE 29837.48557 32346.57444 29203.87017 28267.91035 30579.08611 29728.45401 29372.22307 32013.65033 31932.44144 32235.31562 0.925614811 1.003451457 0.905958872 0.876923641 0.948620652 0.922232447 0.911181495 0.993123527 0.990604274 1 14.97635449 -9.569474472 0.525900821 1.021183458 0.931120139 0.296344205 0.036535349 1.747063072 0.552088056 0.083804751 0.008798634 2.69E-10 9.569474472 -0.090063319 TPFGK(ac)TPGQR ddPTM_HeLa_CUDC101_4h_R1 2 TPFGKTPGQR 10 1 Q9Y657 Q9Y657 SPIN1 Spindlin-1 0 1 ; TPFGK(1)TPGQR;TPFGK(1)TPGQR 85.29 0.033969 4118800 669.79 785.6 648.92 1398.2 1053.49 1248.34 1167.15 1324.31 308.59 276.95 FALSE TRUE FALSE 591.2782315 809.8034048 684.0025781 1455.22464 975.7761415 1224.529994 1212.167366 1475.064097 295.8697896 275.3026891 2.147738671 2.941501979 2.484547392 5.285907829 3.544375628 4.44794055 4.403034967 5.357971992 1.074707227 1 8.104874892 -6.688355787 0.398304817 1.010993152 5.259150775 0.840201297 0.607914763 0.318912814 0.115799849 0.264618421 0.526864599 2.05E-07 6.688355787 4.248157623 IGFPSTS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 2 IGFPSTSPAK 10 0 Q9UDT6-2;Q9UDT6 Q9UDT6-2 CLIP2 CAP-Gly domain-containing linker protein 2 1 0 IGFPS(0.136)T(0.136)S(0.729)PAK;IGFPS(0.045)T(0.045)S(0.91)PAK ; 112.85 0.007312 60957000 16643.9 10212.4 6821.5 12755.1 11038.8 11089.2 9344.6 8254.3 5705.5 4836.3 TRUE FALSE FALSE 14692.92727 10527.03194 7190.290924 13275.30811 10224.48972 10877.69199 9705.024352 9193.936147 5470.316875 4807.533473 3.056229844 2.189694986 1.495629924 2.761355316 2.126764124 2.262634685 2.018711759 1.9124019 1.137863502 1 12.23108119 -9.569456537 1.358031465 1.002417313 2.321502772 0.543244988 0.417809985 0.275111551 0.912141884 0.329311794 0.077859383 2.69E-10 9.569456537 1.319085459 PEK(ac)DQLKNK(ac)FMK ddPTM_HeLa_CUDC101_4h_R1 2 PEKDQLKNKFMK 12 3 Q9Y6R1-3;Q9Y6R1-4;Q9Y6R1-2;Q9Y6R1;Q9Y6R1-5 Q9Y6R1-3 SLC4A4 Electrogenic sodium bicarbonate cotransporter 1 0 2 ; PEK(1)DQLK(0.004)NK(0.996)FMK;PEK(1)DQLK(0.004)NK(0.996)FMK 118.03 0.0027646 73892000 1182.94 3449.6 6535.4 11377.7 11238.6 10856.6 11649.3 9974.4 152.5 484.95 FALSE TRUE FALSE 1044.277566 3555.878087 6888.723493 11841.73178 10409.55087 10649.52844 12098.6174 11109.84538 146.2138855 482.0654958 2.166256609 7.376338107 14.29001568 24.56457035 21.59364435 22.09145549 25.09745565 23.04634012 0.303307096 1 8.913085361 -6.686904125 1.535608415 1.460346302 23.46710802 0.980872871 1.369175084 0.029913964 0.143050236 0.219677015 0.333192474 2.06E-07 6.686904125 22.00676172 up LGTSES(ph)LPCTAEELSR ddPTM_HeLa_CUDC101_4h_R1 1 LGTSESLPCTAEELSR 16 0 Q9BZL6-2;Q9BZL6;Q9BZL6-3 Q9BZL6-2 PRKD2 Serine/threonine-protein kinase D2 1 0 LGTS(0.141)ES(0.837)LPCT(0.021)AEELSR 188 5.73E-11 9906000 1393.3 1119.8 939.24 947.44 1094.9 1092 998.23 1036.9 880.13 852.37 TRUE FALSE FALSE 1229.979486 1154.299711 990.0181554 986.0806984 1014.131408 1071.171919 1036.732065 1154.936505 843.8506689 847.3000653 1.451645688 1.362326946 1.168438663 1.1637916 1.196897593 1.264217912 1.223571327 1.363078503 0.995928955 1 9.72672917 -9.569198367 1.368584245 1.001080983 1.289781251 0.593548006 0.090454956 0.28903757 0.976196866 0.075895991 0.018094512 2.70E-10 9.569198367 0.288700268 ELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKGEGT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 ELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKGEGTPR 43 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 ELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKGEGT(1)PR 61.96 2.87E-05 24659000 931.87 773.22 853.16 656.14 353.25 584.84 783.36 787.34 958.69 567.84 TRUE FALSE FALSE 822.6376112 797.0419917 899.2844103 682.9002253 327.1914513 573.6851514 813.5744576 876.9676031 919.1723924 564.4624624 1.457382317 1.412037194 1.593169555 1.209823984 0.579651391 1.016338888 1.441326061 1.553633167 1.628403045 1 9.140733833 -9.568584306 1.381683675 1.001800155 1.292912954 0 0.34496773 0.803894485 2.777680088 0.213402517 0.051425722 2.70E-10 9.568584306 0.291112799 ES(ph)PSPAPKPR ddPTM_HeLa_CUDC101_4h_R1 2 ESPSPAPKPR 10 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 ES(0.598)PS(0.402)PAPKPR;ES(0.866)PS(0.134)PAPKPR ; 82.287 0.022532 111469000 12976.3 11479.7 12078.1 12937.2 12382.1 11790.3 11766.4 12465 14082.9 13600.5 TRUE FALSE FALSE 11455.23778 11833.37595 12731.07862 13464.83494 11468.69715 11565.41967 12220.23399 13883.96521 13502.3969 13519.60362 0.847305743 0.875275362 0.941675435 0.995948943 0.848301287 0.855455529 0.903889961 1.026950612 0.998727276 1 13.72276523 -9.568453081 1.367119936 0.999640391 0.901943373 0.24676386 0.05902345 0.47745557 1.608951466 0.042393114 0.010108444 2.70E-10 9.568453081 -0.097697018 NHLLQFALES(ph)PAKSPASSSSK ddPTM_HeLa_CUDC101_4h_R1 1 NHLLQFALESPAKSPASSSSK 21 1 Q9NS91;F8WE49 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 NHLLQFALES(0.991)PAKS(0.004)PAS(0.003)S(0.002)SSK 77.689 0.0013346 20228000 1620.7 1962.2 1783.5 1918.2 2685.6 2109.8 2256.1 1494.2 1950 2873.2 TRUE FALSE FALSE 1430.724003 2022.653056 1879.921405 1996.432487 2487.488638 2069.55908 2343.118533 1664.293688 1869.620175 2856.110079 0.500934475 0.708184559 0.658210417 0.699004041 0.870935843 0.724607604 0.820388034 0.582713426 0.654603682 1 11.47983587 -9.568161309 1.36074839 0.999145592 0.679101693 0 0.145047129 0.279257005 0.930784635 0.081093007 0.019253473 2.70E-10 9.568161309 -0.320043899 (ac)MEFS(ph)S(ph)PS(ph)REECPK ddPTM_HeLa_CUDC101_4h_R1 1 MEFSSPSREECPK 13 1 A0A0G2JNZ0;A0A0G2JLB3;P04062-5;P04062 A0A0G2JNZ0 GBA Glucosylceramidase 3 0 MEFS(1)S(1)PS(1)REECPK 46.606 0.0032933 0 446.55 446.37 348.9 618.74 465.26 505.3 527.73 322.91 586.45 578.14 TRUE FALSE FALSE 394.2060859 460.1221306 367.7625894 643.9748916 430.9386967 495.6622444 548.0847229 359.6687692 562.2762828 574.7011976 0.685932251 0.800628453 0.63991965 1.120538628 0.749848266 0.862469482 0.953686412 0.625836123 0.978380218 1 9.166668245 -9.566844269 1.364227011 0.999264329 0.797985739 0.210457339 0.142215307 0.522037536 1.751495445 0.095341261 0.022744994 2.71E-10 9.566844269 -0.20127859 EWYQSTIPQS(ph)PSPAPDDPEEGRQGQTEK ddPTM_HeLa_CUDC101_4h_R1 2 EWYQSTIPQSPSPAPDDPEEGRQGQTEK 28 1 Q08499-6;Q08499;Q08499-10;A0A087WSZ7;Q08499-11;Q08499-9;A0A1B0GW84;Q08499-2;Q08499-3;Q08499-4;Q08499-8;Q08499-5 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 EWYQSTIPQS(0.942)PS(0.057)PAPDDPEEGRQGQTEK;EWY(0.004)QS(0.112)T(0.093)IPQS(0.396)PS(0.396)PAPDDPEEGRQGQT(0.001)EK ; 91.416 1.57E-07 22090000 1577.36 1530.27 1869.86 1700.1 2178.6 1788.61 1676.82 1930.36 2114.81 2397.1 TRUE FALSE FALSE 1392.464252 1577.415805 1970.950288 1769.437426 2017.889018 1754.495244 1741.495509 2150.10438 2027.636637 2382.841943 0.58437122 0.661989273 0.827142687 0.7425744 0.846841321 0.73630366 0.730848101 0.902327738 0.850932074 1 11.21846754 -9.566331359 1.365174974 0.99895297 0.732572475 0.270272925 0.098261567 0.286541441 0.963161635 0.069252355 0.016546839 2.71E-10 9.566331359 -0.266380495 NSSQSLMVPQS(ph)GSPEPESIR ddPTM_HeLa_CUDC101_4h_R1 1 NSSQSLMVPQSGSPEPESIR 20 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970;B7ZB24;H0YGQ3;A0A075B6R8 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 NSSQS(0.002)LMVPQS(0.949)GS(0.05)PEPESIR 127.91 3.83E-05 10298000 906.14 1016.2 783.3 1095.2 1135.6 947.81 874.48 677.6 1106.4 1157.4 TRUE FALSE FALSE 799.9236428 1047.507918 825.6475674 1139.86699 1051.82905 929.7321034 908.2089865 754.735245 1060.793724 1150.515733 0.695273971 0.910468138 0.717632574 0.990744374 0.914223961 0.808100295 0.789392931 0.655997326 0.922015834 1 10.168065 -9.566113411 1.342694227 0.999989177 0.803118777 0.246219032 0.102315368 0.412650991 1.33347874 0.073310616 0.0172275 2.72E-10 9.566113411 -0.1968704 VSTSGS(ph)S(ph)VDS(ph)SKK ddPTM_HeLa_CUDC101_4h_R1 1 VSTSGSSVDSSKK 13 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 3 0 VSTSGS(0.956)S(0.956)VDS(0.543)S(0.543)KK 76.827 0.018684 5573200 1143.9 1267.4 1038.2 1167.7 1372.3 963.27 1167 1144.8 1295 1407 TRUE FALSE FALSE 1009.813776 1306.447092 1094.328232 1215.323853 1271.068163 944.8972297 1212.011581 1275.119405 1241.619552 1398.631101 0.722001516 0.934089833 0.782428069 0.868938101 0.908794436 0.675587171 0.866569877 0.911691012 0.887739126 1 10.44979978 -9.566008754 1.338919565 1.000105829 0.820250336 0.149161457 0.087471426 0.357549108 1.147733474 0.057975189 0.013586773 2.72E-10 9.566008754 -0.179855493 RLS(ph)PS(ph)AS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 RLSPSASPPR 10 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 RLS(1)PS(1)AS(1)PPR 74.698 0.027255 141570000 5958.2 5792.8 5138.7 5034.1 6343.1 5252.3 5191.7 5454.9 5603.6 5988.7 TRUE FALSE FALSE 5259.788828 5971.269302 5416.513666 5239.412357 5875.18215 5152.121128 5391.945608 6075.863767 5372.617236 5953.078946 0.883540917 1.003055621 0.909867602 0.880118071 0.986914873 0.865454864 0.905740652 1.020625431 0.902493867 1 12.53942031 -9.565903278 1.323933758 1.000246499 0.924485538 0 0.059866497 0.523702248 1.636516629 0.035635987 0.008256581 2.72E-10 9.565903278 -0.075760961 HRPS(ph)PPATPPPK ddPTM_HeLa_CUDC101_4h_R1 4 HRPSPPATPPPK 12 1 A9Z1X7;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 HRPS(0.999)PPAT(0.001)PPPK;HRPS(0.999)PPAT(0.001)PPPK;HRPS(1)PPATPPPK;HRPS(0.988)PPAT(0.012)PPPK ;;; 93.237 0.0096997 92911800 11792.4 11780.9 11986.6 11972.4 13154.8 11182.1 11330.8 11666.6 12876.5 14302.3 TRUE FALSE FALSE 10410.11275 12143.85557 12634.63185 12460.68622 12184.39661 10968.82007 11767.83275 12994.67859 12345.72522 14217.22928 0.732218109 0.854164713 0.888684539 0.876449692 0.857016256 0.771516014 0.827716323 0.914009216 0.868363657 1 13.79535271 -9.565775272 1.350682687 0.999730664 0.827191187 0.126257226 0.065374122 0.272828157 0.894312079 0.042552015 0.010066124 2.72E-10 9.565775272 -0.172539477 KRRS(ph)ST(ph)VAPAQPDGAESEWTDVETR ddPTM_HeLa_CUDC101_4h_R1 2 KRRSSTVAPAQPDGAESEWTDVETR 25 3 Q02241;A0A2U3TZL8;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 2 0 KRRS(0.642)S(0.642)T(0.714)VAPAQPDGAES(0.002)EWT(0.001)DVETR;KRRS(0.643)S(0.643)T(0.715)VAPAQPDGAESEWTDVETR ; 57.922 0.0046111 18503300 3084 3035 3513.3 3142.5 3834.8 3221.3 2715.7 2581.6 3509.3 3862.9 TRUE FALSE FALSE 2722.498195 3128.504753 3703.239625 3270.664733 3551.914444 3159.85907 2820.445459 2875.478909 3364.645169 3839.923299 0.708998067 0.814731053 0.964404582 0.851752621 0.924996196 0.822896403 0.734505676 0.74883759 0.876227181 1 11.90686178 -9.565503155 1.35095276 0.999685499 0.812171354 0.178569277 0.08456551 0.361174868 1.184601376 0.061214281 0.014490374 2.72E-10 9.565503155 -0.187514144 SDS(ph)PSVGETER ddPTM_HeLa_CUDC101_4h_R1 1 SDSPSVGETER 11 0 A0A0C4DH56;Q9BWT3-2;Q9BWT3 A0A0C4DH56 PAPOLG Poly(A) polymerase gamma 1 0 S(0.02)DS(0.972)PS(0.008)VGETER 82.505 0.035403 12815000 3372 2893.1 3473.1 3274.8 3331 3178 3065.6 3007.5 3597.6 3603.6 TRUE FALSE FALSE 2976.739272 2982.232982 3660.866292 3408.360499 3085.278766 3117.384945 3183.841219 3349.861643 3449.305405 3582.165627 0.830988732 0.83252236 1.021970136 0.951480432 0.861288697 0.870251482 0.888803464 0.935149848 0.962910642 1 11.80661633 -9.565259421 1.364432712 0.999557803 0.891141984 0.237371967 0.05668361 0.426600958 1.432712378 0.041928692 0.010030412 2.72E-10 9.565259421 -0.108415819 EPGFEAGPEAS(ph)DDDLWTR ddPTM_HeLa_CUDC101_4h_R1 2 EPGFEAGPEASDDDLWTR 18 0 H9KVB4;O15417-2;O15417;H7C177 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 EPGFEAGPEAS(1)DDDLWTR;EPGFEAGPEAS(1)DDDLWTR ; 211.06 4.38E-24 11372100 732.98 758.74 742.6 808.15 590.76 823.51 705.87 621.42 619.14 864.6 TRUE FALSE FALSE 647.0611955 782.1158801 782.7472022 841.1098501 547.1808118 807.8029188 733.0956424 692.1599409 593.6187871 859.4573207 0.752871818 0.910011307 0.910745866 0.978652261 0.636658504 0.939898817 0.85297504 0.805345332 0.690690245 1 9.747282189 -9.565136408 1.337194424 1.00010414 0.840053269 0 0.134307161 0.459916108 1.472330528 0.066300892 0.015539892 2.72E-10 9.565136408 -0.160050871 LNQSDSIEDPNS(ph)PAGRR ddPTM_HeLa_CUDC101_4h_R1 3 LNQSDSIEDPNSPAGRR 17 1 Q86VS8 Q86VS8 HOOK3 Protein Hook homolog 3 1 0 LNQSDSIEDPNS(1)PAGRR;LNQSDSIEDPNS(1)PAGRR;LNQSDSIEDPNS(1)PAGRR ;; 131.9 0.00013415 18960900 3515.66 3102.96 3466.25 3353.37 3518.27 3733.05 3223.6 2832.01 3905.52 3787.75 TRUE FALSE FALSE 3103.559664 3198.55852 3653.64596 3490.134923 3258.734231 3661.848291 3347.935332 3154.394571 3744.532813 3765.220295 0.824270407 0.84950103 0.970367116 0.926940431 0.86548302 0.972545563 0.889173825 0.837771584 0.994505638 1 11.87851856 -9.565072609 1.361531184 0.999588333 0.886749329 0.419356478 0.049167027 0.363348146 1.214227707 0.037140046 0.008868312 2.72E-10 9.565072609 -0.112839003 QQQLEEEAAKPPEPEKPVS(ph)PPPIESK ddPTM_HeLa_CUDC101_4h_R1 4 QQQLEEEAAKPPEPEKPVSPPPIESK 26 2 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;C9JQE8;C9J330;H7C1Y3;H0YGK8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 QQQLEEEAAKPPEPEKPVS(1)PPPIESK;QQQLEEEAAKPPEPEKPVS(0.998)PPPIES(0.002)K;QQQLEEEAAKPPEPEKPVS(0.998)PPPIES(0.002)K;QQQLEEEAAKPPEPEKPVS(1)PPPIESK ;;; 84.947 9.66E-06 224506000 12962.1 11217.4 11460.4 10950.1 11371.4 10861.4 10914.2 10561.3 12601.4 13848.1 TRUE FALSE FALSE 11442.70229 11562.9948 12079.98389 11396.69241 10532.55448 10654.23689 11335.16435 11763.5557 12081.96496 13765.73089 0.831245532 0.83998408 0.87754032 0.827903182 0.765128606 0.773968123 0.823433528 0.854553659 0.877684233 1 13.74879359 -9.564872803 0.382058242 1.082316242 0.808473472 0.373920969 0.049155867 0.984843814 0.158250341 0.113790111 0.012009117 2.72E-10 9.564872803 -0.27384277 AADSS(ph)DSDGAEESPAEPGAPR ddPTM_HeLa_CUDC101_4h_R1 1 AADSSDSDGAEESPAEPGAPR 21 0 P16383-3;P16383-4;P16383;C9JII4;P16383-2 P16383-3 GCFC2 GC-rich sequence DNA-binding factor 2 1 0 AADS(0.179)S(0.458)DS(0.362)DGAEES(0.001)PAEPGAPR 110.74 2.42E-05 6198400 356.7 328.93 390.54 492.53 372.33 295.01 470.34 479.38 435.41 533.8 TRUE FALSE FALSE 314.8881667 339.0639434 411.6537737 512.6175023 344.8639577 289.3831758 488.4811714 533.9506815 417.4622155 530.6249339 0.593428892 0.638989843 0.775790483 0.966063729 0.649920378 0.545362943 0.920577116 1.006267605 0.7867369 1 9.051548659 -9.564171129 1.36553118 0.998802849 0.737987368 0.019418532 0.165704838 0.47485813 1.598515421 0.112234028 0.026919463 2.73E-10 9.564171129 -0.260815481 DLDEEGS(ph)EK ddPTM_HeLa_CUDC101_4h_R1 2 DLDEEGSEK 9 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 DLDEEGS(1)EK;DLDEEGS(1)EK ; 135.99 0.002402 81361000 9602.4 5455.4 5856.9 6421.6 4134.5 5287.8 4724 2954.6 9191 8786.8 TRUE FALSE FALSE 8476.821228 5623.474408 6173.54173 6683.500605 3829.506172 5186.944025 4906.206262 3290.939721 8812.14309 8734.535723 0.970494769 0.643820643 0.706796781 0.76518098 0.438432711 0.593843129 0.561702009 0.376773285 1.008885116 1 13.0925153 -6.670570852 0.604570254 1.010340209 0.475521444 0.809569109 0.094493205 0.213312766 0.160878232 0.024323781 0.046022506 2.14E-07 6.670570852 -0.534818765 ELSSPIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 ELSSPISPK 9 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 ELS(0.001)S(0.008)PIS(0.991)PK;ELS(0.028)S(0.006)PIS(0.966)PK;ELS(0.004)S(0.123)PIS(0.873)PK;ELS(0.008)S(0.046)PIS(0.947)PK ;;; 126.03 0.0042469 196752000 18337.9 16998.4 18107.6 17929.3 17616.4 17085.3 16667 17713.2 18731 19979.2 TRUE FALSE FALSE 16188.35916 17522.10056 19086.55163 18660.53435 16316.87327 16759.42637 17309.85177 19729.59909 17958.90025 19860.36283 0.815108933 0.882264876 0.961037409 0.93958678 0.821579817 0.843863051 0.871577822 0.993415843 0.904258417 1 14.27760436 -9.563875773 1.348917018 0.99978977 0.880467965 0.036986561 0.063263895 0.392103347 1.282286443 0.042228103 0.010007549 2.73E-10 9.563875773 -0.119321805 TEATQGLDYVPSAGT(ph)ISPTSSLEEDKGFK ddPTM_HeLa_CUDC101_4h_R1 1 TEATQGLDYVPSAGTISPTSSLEEDKGFK 29 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 TEATQGLDYVPS(0.009)AGT(0.489)IS(0.489)PT(0.009)S(0.003)SLEEDKGFK 151.41 3.54E-16 9559400 2072.5 2122 2072.4 2032.2 2287.1 2204.2 1718.7 1980.6 2199.6 2160.7 TRUE FALSE FALSE 1829.564692 2187.376305 2184.440213 2115.0819 2118.38519 2162.158557 1784.990835 2206.063498 2108.931557 2147.84806 0.851812903 1.01840365 1.017036658 0.984744656 0.986282609 1.006662714 0.831060105 1.027104076 0.981881166 1 11.06867622 -9.563756056 0.001699631 0.26810795 1.626348428 0 0.069401904 2372668.115 882.1573761 355546.2782 349435.2528 2.73E-10 9.563756056 1.358240478 YAS(ph)SPKPNNSYMFK ddPTM_HeLa_CUDC101_4h_R1 1 YASSPKPNNSYMFK 14 1 Q86VQ1;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 Y(0.002)AS(0.499)S(0.499)PKPNNSYMFK 76.158 0.019013 91383000 5116.4 4156 2818.2 3645.8 4382.3 3725.3 3185.5 3668 3568.5 2780.1 TRUE FALSE FALSE 4516.663348 4284.041434 2970.560417 3794.491482 4059.02646 3654.246109 3308.365802 4085.550293 3421.40492 2763.563842 1.634361863 1.550187251 1.074902042 1.373042817 1.468765222 1.322294804 1.197137462 1.478362914 1.238040847 1 11.43231423 -9.563400937 1.359151097 1.001502848 1.409523485 0.238616076 0.171043096 0.326604662 1.08764464 0.120531537 0.028808515 2.73E-10 9.563400937 0.408020637 HRHS(ph)PTGPPGFPR ddPTM_HeLa_CUDC101_4h_R1 1 HRHSPTGPPGFPR 13 1 P98175-5;P98175-2;P98175 P98175-5 RBM10 RNA-binding protein 10 1 0 HRHS(1)PTGPPGFPR 82.529 0.012607 48841000 2957.4 2861.9 3694.1 3254.6 4212 3339.2 3627.2 2190.7 3855.7 4401.1 TRUE FALSE FALSE 2610.738055 2950.071747 3893.81422 3387.336656 3901.289151 3275.510323 3767.102319 2440.080433 3696.766414 4374.922061 0.596750758 0.674314126 0.890030534 0.774262172 0.891739121 0.748701412 0.861067298 0.557742606 0.844990233 1 12.0950416 -9.563292544 1.357595729 0.99910597 0.7395849 0.217132759 0.118309036 0.345037979 1.14596302 0.0809566 0.019330487 2.73E-10 9.563292544 -0.25952107 ALSGT(ph)SPDDVQPGPSVGPPSK ddPTM_HeLa_CUDC101_4h_R1 1 ALSGTSPDDVQPGPSVGPPSK 21 0 A0A075B797;M0R3B2;Q9Y314 A0A075B797 NOSIP Nitric oxide synthase-interacting protein 1 0 ALS(0.018)GT(0.576)S(0.406)PDDVQPGPSVGPPSK 169.49 1.32E-08 9985900 2152.9 1750.4 1906.5 1869.6 1775.9 1894.2 1713.2 1710.7 2176.2 2133 TRUE FALSE FALSE 1900.540326 1804.327749 2009.571157 1945.850369 1644.895395 1858.071291 1779.278698 1905.439173 2086.496115 2120.312821 0.896349023 0.850972428 0.947771073 0.917718532 0.775779582 0.876319415 0.839158581 0.898659459 0.984051077 1 11.05006141 -9.563284921 0.26921802 1.082640203 0.85024732 0.544853471 0.043594376 3.129107053 0.268465229 0.237209797 0.031989499 2.73E-10 9.563284921 -0.232392884 SAS(ph)EPSLNR ddPTM_HeLa_CUDC101_4h_R1 2 SASEPSLNR 9 0 H7C560;A0A2U3TZI2;A0A2R8Y8E0;P15056 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 S(0.003)AS(0.987)EPS(0.01)LNR;S(0.013)AS(0.986)EPS(0.001)LNR ; 147.3 0.0010009 276880000 3844.7 3928.7 3373.4 3753.7 4070.4 3465.2 4036.2 3733.7 4052 4436.2 TRUE FALSE FALSE 3394.030094 4049.73859 3555.776208 3906.792111 3770.134701 3399.107083 4191.877586 4158.729316 3884.974845 4409.813285 0.769653923 0.918346952 0.806332599 0.885931412 0.854942025 0.770805216 0.950579382 0.943062449 0.880983977 1 12.10650186 -9.563179409 1.342293536 0.999881674 0.850835289 0.05816857 0.071960956 0.343132326 1.109382002 0.046068759 0.010875348 2.73E-10 9.563179409 -0.149046385 SAS(ph)PDDDLGSSNWEAADLGNEER ddPTM_HeLa_CUDC101_4h_R1 3 SASPDDDLGSSNWEAADLGNEER 23 0 E9PM92;O00193;E9PQA1 E9PM92 C11orf58;SMAP Small acidic protein 1 0 S(0.107)AS(0.893)PDDDLGSSNWEAADLGNEER;S(0.416)AS(0.584)PDDDLGSSNWEAADLGNEER;S(0.188)AS(0.812)PDDDLGSSNWEAADLGNEER ;; 223.87 7.92E-36 463293000 6636.4 7277.4 5206.3 6376.3 6328.66 6354.7 6111.61 5996.6 6814.5 7083.6 TRUE FALSE FALSE 5858.491252 7501.608068 5487.768326 6636.353075 5861.80736 6233.494685 6347.336845 6679.228705 6533.603426 7041.466432 0.831998748 1.065347416 0.779350208 0.942467473 0.832469687 0.885255187 0.901422581 0.948556493 0.927875392 1 12.7816602 -9.563046392 1.299375744 1.000770549 0.89032055 0.068378511 0.07777049 0.517254675 1.547205732 0.050909889 0.011624383 2.73E-10 9.563046392 -0.110449999 YDSDGDKSDDLVVDVSNEDPAT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 YDSDGDKSDDLVVDVSNEDPATPR 24 1 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 YDSDGDKSDDLVVDVS(0.11)NEDPAT(0.89)PR 53.679 0.0024616 0 1008 828.23 601.79 855.8 702.8 714.91 770.79 685.5 747.55 597.65 TRUE FALSE FALSE 889.843768 853.7467846 634.3245877 890.7032231 650.9558442 701.2742829 800.5196285 763.5345491 716.7356726 594.0951512 1.497813551 1.437053951 1.067715477 1.499260213 1.095709741 1.18040735 1.347460296 1.285205825 1.206432456 1 9.214550204 -9.562593684 1.360544487 1.001329718 1.321479921 0.150486999 0.158083582 0.362504938 1.210523759 0.104953588 0.025144789 2.74E-10 9.562593684 0.320150203 IIGAK(ac)DHASIQMNVAEVDK ddPTM_HeLa_CUDC101_4h_R1 1 IIGAKDHASIQMNVAEVDK 19 1 Q8WVC2;P63220;Q9BYK1 Q8WVC2 RPS21 40S ribosomal protein S21 0 1 IIGAK(1)DHASIQMNVAEVDK 46.159 0.034739 17476000 504.51 474.97 1054.1 1318.5 1299.2 1251.6 1289.7 1228.7 440.84 624.77 FALSE TRUE FALSE 445.3721026 489.6032627 1111.087834 1372.274129 1203.360604 1227.727815 1339.444161 1368.570241 422.6683886 621.0538403 0.717123176 0.788342702 1.789036252 2.209589636 1.937610762 1.976846025 2.156727926 2.203625761 0.68056642 1 9.278574533 -6.670279479 3.930926564 0.855608815 2.077987342 0.960054589 0.125644651 0.034781118 1.02401054 0.022741156 0.032379431 2.14E-07 6.670279479 1.222378527 up PT(ph)PDY(ph)LMQLMNDKK ddPTM_HeLa_CUDC101_4h_R1 1 PTPDYLMQLMNDKK 14 1 Q96PU8-5;Q96PU8-9;Q96PU8-8;Q96PU8-6;Q96PU8-3;Q96PU8 Q96PU8-5 QKI Protein quaking 2 0 PT(1)PDY(1)LMQLMNDKK 42.785 0.003379 0 1270.7 1236.1 1215.6 1666.5 1586 1320.4 1432.7 1323.6 1345.9 1813.3 TRUE FALSE FALSE 1121.750472 1274.182776 1281.319013 1734.467073 1469.00394 1295.21557 1487.959719 1474.273274 1290.421432 1802.514411 0.622325384 0.706891866 0.710850912 0.962248658 0.814974866 0.718560452 0.825491164 0.81789819 0.715900758 1 10.81579508 -9.562474381 1.359944771 0.999007713 0.756056291 0 0.123473494 0.319133593 1.064629786 0.070102155 0.016790832 2.74E-10 9.562474381 -0.242951422 FHS(ph)PSTTWSPNKDTPQEK ddPTM_HeLa_CUDC101_4h_R1 1 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 FHS(0.411)PS(0.251)T(0.251)T(0.085)WS(0.001)PNKDTPQEK 62.684 0.019835 52616000 758.28 773.75 745.61 698.8 1043 812.56 816.02 843.23 931.5 1039.3 TRUE FALSE FALSE 669.3955679 797.5883204 785.9199319 727.3000845 966.0599679 797.0617718 847.4941647 939.2198947 893.1031757 1033.118197 0.64793706 0.772020397 0.760726056 0.703985358 0.935091426 0.771510727 0.820326432 0.909111752 0.864473376 1 10.0127896 -9.562451877 1.3551407 0.99926117 0.772409825 0.219219043 0.091305879 0.305816631 1.011685227 0.062654843 0.014953563 2.74E-10 9.562451877 -0.226851345 QDPVTYIS(ph)ETDEEDDFMCKK ddPTM_HeLa_CUDC101_4h_R1 1 QDPVTYISETDEEDDFMCKK 20 1 P35251-2;P35251;D6RAD2 P35251-2 RFC1 Replication factor C subunit 1 1 0 QDPVT(0.005)Y(0.014)IS(0.585)ET(0.396)DEEDDFMCKK 55.247 0.021379 18371000 1692.9 2103.8 2410.5 2457.4 2032.2 2044.6 1693.9 1481.7 2277 2854.9 TRUE FALSE FALSE 1494.460828 2168.615584 2540.818921 2557.623394 1882.288655 2005.602662 1759.23429 1650.370739 2183.141096 2837.918928 0.526604482 0.76415699 0.895310608 0.901232015 0.663263716 0.706715982 0.619902941 0.581542595 0.769275357 1 11.47061766 -9.562416073 1.337603323 0.999952498 0.692981296 0.134583924 0.135177123 0.345656395 1.108607468 0.095430171 0.022475639 2.74E-10 9.562416073 -0.306971202 TVFS(ph)HGS(ph)QKATDIMDAMLRK ddPTM_HeLa_CUDC101_4h_R1 1 TVFSHGSQKATDIMDAMLRK 20 2 O75969 O75969 AKAP3 A-kinase anchor protein 3 2 0 T(0.117)VFS(0.893)HGS(0.988)QKAT(0.003)DIMDAMLRK 57.525 0.017469 8366500 2348.4 1779.4 1759.4 1801.8 1891.2 2118.2 1808.2 1617.1 1921.6 1629 TRUE FALSE FALSE 2073.124112 1834.221205 1854.518486 1875.285192 1751.689944 2077.798864 1877.94288 1801.184127 1842.390835 1619.310636 1.280251032 1.132717321 1.145251841 1.158076252 1.08175041 1.28313791 1.159717499 1.112315382 1.137762449 1 10.66116405 -9.561117943 1.340071618 1.000173631 1.181846453 0.118668763 0.075039814 0.292448193 0.94258756 0.047776423 0.011297802 2.75E-10 9.561117943 0.181672822 KLSVPTS(ph)DEEDEVPAPKPR ddPTM_HeLa_CUDC101_4h_R1 4 KLSVPTSDEEDEVPAPKPR 19 2 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 KLS(0.023)VPT(0.163)S(0.813)DEEDEVPAPKPR;KLS(0.003)VPT(0.167)S(0.83)DEEDEVPAPKPR;KLS(0.002)VPT(0.066)S(0.932)DEEDEVPAPKPR;KLS(0.013)VPT(0.373)S(0.614)DEEDEVPAPKPR ;;; 87.419 0.0017479 465891000 13251.1 15240.8 15582.8 13276.9 15328.5 13934.2 13279.1 15025.3 14631.6 18848.8 TRUE FALSE FALSE 11697.82615 15710.35098 16425.2533 13818.38937 14197.74709 13668.42835 13791.27934 16735.71942 14028.47926 18736.6865 0.624327367 0.838480752 0.876635968 0.737504434 0.757751222 0.72950083 0.736057538 0.893205926 0.748717189 1 14.19357822 -9.560658886 1.333770218 1.000011454 0.75586747 0 0.107922472 0.275608808 0.878555987 0.060400542 0.014224987 2.75E-10 9.560658886 -0.244143984 AIVAIENPADVSVIS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 2 AIVAIENPADVSVISSR 17 0 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 RPSA 40S ribosomal protein SA 1 0 AIVAIENPADVS(0.011)VIS(0.938)S(0.052)R;AIVAIENPADVS(0.001)VIS(0.962)S(0.037)R ; 182.28 8.20E-11 17217400 4077 3522.8 4033.7 3551.8 4231.2 3643 3230.4 2981.6 4378.2 5491.1 TRUE FALSE FALSE 3599.10024 3631.333292 4251.774023 3696.657756 3919.072806 3573.515845 3354.99761 3321.013292 4197.728743 5458.438693 0.659364416 0.665269594 0.778935931 0.677237204 0.717984212 0.654677289 0.614644187 0.608418172 0.769034696 1 12.41427263 -9.560644309 0.48779431 1.115347807 0.660857039 0.381208886 0.086280296 0.550036015 0.147642031 0.126015295 0.013128171 2.75E-10 9.560644309 -0.454490768 KAESTES(ph)IGSSEK ddPTM_HeLa_CUDC101_4h_R1 1 KAESTESIGSSEK 13 1 Q9BZI7-2;Q9BZI7;A0A1B0GVA2 Q9BZI7-2 UPF3B Regulator of nonsense transcripts 3B 1 0 KAES(0.176)T(0.082)ES(0.425)IGS(0.297)S(0.02)EK 74.812 0.022476 14529000 2788.8 3002.1 2865.2 2507.2 2624.8 2944.5 2672.1 3691.5 2823 3572.1 TRUE FALSE FALSE 2461.901092 3094.591143 3020.101379 2609.454453 2431.173733 2888.338568 2775.163792 4111.725438 2706.634745 3550.85299 0.693326673 0.87150641 0.850528419 0.734881016 0.684673159 0.81342105 0.78154849 1.157954286 0.76224917 1 11.79394992 -9.560612999 1.337540494 0.999871161 0.80084582 0 0.147312138 0.496799287 1.594364983 0.088832958 0.020983382 2.75E-10 9.560612999 -0.199025341 SIDAVIATASAPPS(ph)SSPGR ddPTM_HeLa_CUDC101_4h_R1 1 SIDAVIATASAPPSSSPGR 19 0 Q9NR48;Q9NR48-2 Q9NR48 ASH1L Histone-lysine N-methyltransferase ASH1L 1 0 SIDAVIAT(0.01)AS(0.01)APPS(0.327)S(0.327)S(0.327)PGR 71.143 0.012988 18315000 1901.6 2116.5 2169.5 1673.2 2194.1 1952.2 1754.8 1455.1 2276.2 2317.3 TRUE FALSE FALSE 1678.697331 2181.706856 2286.789732 1741.440328 2032.245614 1914.965038 1822.483224 1620.742702 2182.374073 2303.516597 0.728754172 0.947120094 0.992738553 0.755992091 0.88223615 0.83132244 0.79117434 0.703594975 0.947409746 1 11.16962228 -9.55990411 1.311367948 1.000696058 0.822884005 0.292507459 0.088606409 0.420098956 1.28639376 0.066652689 0.015445393 2.75E-10 9.55990411 -0.177812053 ESTESSNT(ph)TIEDEDVKAR ddPTM_HeLa_CUDC101_4h_R1 2 ESTESSNTTIEDEDVKAR 18 1 H0Y9J2;D6R938;Q13557-8;Q13557-12;Q13557;E9PBG7;E9PF82;Q13557-10;Q13557-6;Q13557-11 H0Y9J2 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 1 0 ESTES(0.001)S(0.001)NT(0.825)T(0.173)IEDEDVKAR;ESTESSNT(0.5)T(0.5)IEDEDVKAR ; 151.21 6.99E-05 53802000 3072.8 2950.5 3070.5 3275.5 4378 2706.4 2996.4 2725.2 3500.9 3884.5 TRUE FALSE FALSE 2712.611042 3041.401408 3236.500518 3409.089048 4055.043662 2654.779929 3111.972152 3035.425752 3356.59142 3861.394821 0.702495126 0.787643209 0.838168762 0.882864666 1.050149972 0.687518384 0.805919181 0.786095671 0.869269157 1 11.91490636 -9.559825901 1.35031037 0.999406119 0.807103907 0.121686041 0.103267657 0.410313351 1.347334673 0.07107199 0.016973959 2.76E-10 9.559825901 -0.192302212 GVPHPEDDHS(ph)QVEGPESLR ddPTM_HeLa_CUDC101_4h_R1 2 GVPHPEDDHSQVEGPESLR 19 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 GVPHPEDDHS(1)QVEGPESLR;GVPHPEDDHS(1)QVEGPESLR ; 139.95 3.36E-05 15976200 4183.9 2871.73 3597.4 3452 3846.9 3990.8 3335.9 2960.1 3587.7 3309.3 TRUE FALSE FALSE 3693.469584 2960.204597 3791.886326 3592.787481 3563.121851 3914.682139 3464.56678 3297.065819 3439.813487 3289.616136 1.122766132 0.899863229 1.152683525 1.092160098 1.083142137 1.190011836 1.053182693 1.002264605 1.045658017 1 11.68370353 -9.559518566 1.242447379 0.998598126 1.081296933 0.049610116 0.077781634 0.790975161 2.12596936 0.057264915 0.012552377 2.76E-10 9.559518566 0.082698807 TIS(ph)VSGSTAK ddPTM_HeLa_CUDC101_4h_R1 1 TISVSGSTAK 10 0 Q8TDJ6;Q8TDJ6-3 Q8TDJ6 DMXL2 DmX-like protein 2 1 0 T(0.004)IS(0.928)VS(0.007)GS(0.051)T(0.01)AK 89.9 0.028645 8577400 3668.9 1761.5 2165 2433.6 2644.5 2682.2 2591.7 3555.4 1637.5 1738.4 TRUE FALSE FALSE 3238.837104 1815.769727 2282.046449 2532.852727 2449.420504 2631.041504 2691.662737 3960.132365 1570.001557 1728.059919 1.874262036 1.050756231 1.32058294 1.465720429 1.417439567 1.522540668 1.557621184 2.291663802 0.908534212 1 10.75493753 -9.559154119 1.304442413 0.997131331 1.571949982 0.367811371 0.31580219 0.45497527 1.376042688 0.232847653 0.053730305 2.76E-10 9.559154119 0.574818651 LCDDGPQLPT(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 LCDDGPQLPTSPR 13 0 O60504-2;O60504;H0YAZ3;H0YB51 O60504-2 SORBS3 Vinexin 1 0 LCDDGPQLPT(0.5)S(0.5)PR 246.77 5.08E-55 252240000 5060.6 4455.8 3908.5 3560.5 4064.2 3871 4027.9 3893 4158.8 3588 TRUE FALSE FALSE 4467.404139 4593.077917 4119.805333 3705.71258 3764.392063 3797.167125 4183.257452 4336.163384 3987.372504 3566.658416 1.252546114 1.287781834 1.155088279 1.038987239 1.055439468 1.064628759 1.172878634 1.215749555 1.117957494 1 11.80035734 -9.559083638 1.369495772 1.001076364 1.163287978 0.109017625 0.086779886 0.430881555 1.463365844 0.063205172 0.015331775 2.76E-10 9.559083638 0.162211613 LGGLRPES(ph)PESLTSVSR ddPTM_HeLa_CUDC101_4h_R1 3 LGGLRPESPESLTSVSR 17 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 LGGLRPES(0.75)PES(0.055)LT(0.091)S(0.091)VS(0.012)R;LGGLRPES(0.965)PES(0.02)LT(0.012)S(0.003)VSR;LGGLRPES(0.978)PES(0.014)LT(0.007)S(0.002)VSR ;; 169.06 2.84E-06 1672224000 6542.9 6195 5386.7 5670.5 6568.3 5998.5 5762.7 5572.1 6781.4 6347.1 TRUE FALSE FALSE 5775.95118 6385.860607 5677.921296 5901.7675 6083.769595 5884.088607 5984.969269 6206.405341 6501.867822 6309.347167 0.915459401 1.012126998 0.899922154 0.935400659 0.964247082 0.932598643 0.948587724 0.983684235 1.030513562 1 12.62327502 -9.558531838 1.307077506 1.000238688 0.944703049 0.368683499 0.032660892 0.434776909 1.321692443 0.021504647 0.004977785 2.76E-10 9.558531838 -0.055535639 SCSS(ph)PAVSAVSQLPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SCSSPAVSAVSQLPLSPK 18 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 2 0 S(0.005)CS(0.118)S(0.876)PAVSAVSQLPLS(1)PK 217.39 5.32E-24 41960000 5571.6 4853 3478.1 3571.5 4564.1 4366.9 4402 3774 4502.4 3421.9 TRUE FALSE FALSE 4918.505494 5002.515178 3666.136607 3717.161207 4227.415436 4283.608658 4571.786615 4203.616905 4316.809166 3401.546387 1.445961611 1.470659109 1.077785275 1.092785688 1.242792235 1.25931214 1.34403183 1.235795849 1.269072556 1 11.73197505 -9.557014971 1.357349768 1.001469451 1.289404126 0 0.146545321 0.368759061 1.227268276 0.095637491 0.023068094 2.77E-10 9.557014971 0.287934674 APSTPVPPSPAPAPGLTK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 APSTPVPPSPAPAPGLTKR 19 1 F8W126;Q96EZ8-3;Q96EZ8;Q96EZ8-2;F8W0I9;F8VVA6;F8VP44 F8W126 MCRS1 Microspherule protein 1 0 1 ; APSTPVPPSPAPAPGLTK(1)R;APSTPVPPSPAPAPGLTK(1)R 230.57 3.58E-37 1992920 113.56 308.22 334.64 757.86 993.28 868.45 1191.48 850.44 0 66.87 FALSE TRUE FALSE 100.2486689 317.7158929 352.7316506 788.7688066 920.0077133 851.8857632 1237.435783 947.250652 0 66.47225427 1.508128016 4.77967682 5.306449353 11.86613596 13.84047711 12.81565929 18.61582395 14.25031635 0 1 6.054680376 -6.28701852 0.929064461 1.10669087 15.97171141 0.943093135 1.499643316 0.072562204 0.12402019 0.244410045 0.527118132 5.16E-07 6.28701852 14.86502054 VTSFSTPPT(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 VTSFSTPPTPER 12 0 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 0 VTSFSTPPT(0.999)PER;VTSFS(0.001)T(0.005)PPT(0.994)PER ; 166.62 0.00012765 59797000 3523.2 3478.4 3190.9 3498 4193.3 3518.1 3271 3664 4034.1 4264.9 TRUE FALSE FALSE 3110.215837 3585.565381 3363.409706 3640.66356 3883.968613 3450.998104 3397.163566 4081.09495 3867.812691 4239.532185 0.733622414 0.845745527 0.793344539 0.858741814 0.916131413 0.814004459 0.801306233 0.962628604 0.912320634 1 12.04968936 -9.556714403 1.341460877 0.999583353 0.826622722 0.277615555 0.066954552 0.29675902 0.960557691 0.046053493 0.010981296 2.78E-10 9.556714403 -0.172960631 TSS(ph)VSSISQVSPER ddPTM_HeLa_CUDC101_4h_R1 1 TSSVSSISQVSPER 14 0 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 0 T(0.046)S(0.214)S(0.738)VS(0.002)SISQVSPER 97.223 0.001894 0 1123.4 1387.4 1378 1078.5 1343.9 1548.5 1391.2 1615.4 2160.7 1961.3 TRUE FALSE FALSE 991.716755 1430.14415 1452.498848 1122.485892 1244.763174 1518.964942 1444.85905 1799.290606 2071.635031 1949.6341 0.508668142 0.733544899 0.745010999 0.575741823 0.638459891 0.779102572 0.741092418 0.922886303 1.062576322 1 10.92898767 -9.556639658 1.336807055 0.999489505 0.679916229 0.554779088 0.113250695 0.297483445 0.955006742 0.085201226 0.020246429 2.78E-10 9.556639658 -0.319573275 AEPEAGEEQAGDDRDS(ph)GGPVLQFDYEAVANR ddPTM_HeLa_CUDC101_4h_R1 1 AEPEAGEEQAGDDRDSGGPVLQFDYEAVANR 31 1 P56182 P56182 RRP1 Ribosomal RNA processing protein 1 homolog A 1 0 AEPEAGEEQAGDDRDS(0.999)GGPVLQFDY(0.001)EAVANR 63.713 0.00044696 7018600 319.63 431.55 438.61 301.61 349.86 434.64 326.49 261.63 370.19 496.18 TRUE FALSE FALSE 282.1634559 444.845544 462.3225833 313.9109595 324.0515248 426.3499662 339.0828287 291.4129017 354.9306115 493.2286993 0.572074286 0.901905231 0.937339178 0.636440986 0.657000546 0.864406242 0.687475869 0.59082714 0.719606568 1 8.946112937 -9.555789895 1.308202627 1.00094634 0.719549905 0 0.149448667 0.378077912 1.153052338 0.094633809 0.022024908 2.78E-10 9.555789895 -0.281396435 FGINIPS(ph)PEHSNTIDVCNTVDIK ddPTM_HeLa_CUDC101_4h_R1 1 FGINIPSPEHSNTIDVCNTVDIK 23 0 C9IZ03;Q9HCI7-2;Q9HCI7 C9IZ03 MSL2 E3 ubiquitin-protein ligase MSL2 1 0 FGINIPS(0.996)PEHS(0.004)NT(0.001)IDVCNTVDIK 83.788 0.00027123 12581000 1442.1 1073.1 1295.6 925.49 1463.2 1208.8 1027.7 1140.6 1541.7 1078.7 TRUE FALSE FALSE 1273.059224 1106.160939 1365.644055 963.2354825 1355.262651 1185.744154 1067.338733 1270.441294 1478.150473 1072.283844 1.187240888 1.031593402 1.273584473 0.898302709 1.263902891 1.105811824 0.995388244 1.184799435 1.378506709 1 10.06647114 -9.555393294 1.32223748 0.999917123 1.122417292 0 0.16268035 0.657547629 2.057550423 0.07188423 0.016925949 2.78E-10 9.555393294 0.122500169 S(ph)HS(ph)GTSPDNTAPPPPPPRPQPSHSR ddPTM_HeLa_CUDC101_4h_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 2 0 S(0.54)HS(0.487)GT(0.482)S(0.482)PDNT(0.011)APPPPPPRPQPSHSR 95.957 5.03E-06 10664000 1014.3 940.23 957.52 1231.1 966.8 1009.8 1113.7 684.41 917.82 1180.2 TRUE FALSE FALSE 895.4052916 969.1973719 1009.286428 1281.309579 895.4810901 990.5397474 1156.655782 762.3204679 879.9870711 1173.180118 0.763229173 0.826128364 0.860299635 1.092167826 0.763293783 0.844320264 0.98591492 0.649789795 0.750086928 1 10.19620881 -9.554635512 1.340708806 0.999563559 0.84562322 0 0.138456681 0.562870482 1.821007834 0.077637701 0.01856504 2.79E-10 9.554635512 -0.153940339 SAAVETASLS(ph)PSLVPAR ddPTM_HeLa_CUDC101_4h_R1 1 SAAVETASLSPSLVPAR 17 0 Q2KHT3-3;Q2KHT3 Q2KHT3-3 CLEC16A Protein CLEC16A 1 0 S(0.005)AAVET(0.002)AS(0.134)LS(0.837)PS(0.022)LVPAR 106.35 0.0014151 39215000 2378 2390.3 2228.7 2135.6 3047.3 3035.9 2493.7 2238.6 2938.6 3163.6 TRUE FALSE FALSE 2099.254445 2463.94231 2349.190263 2222.698999 2822.50675 2977.995266 2589.882844 2493.433175 2817.469664 3144.782767 0.667535598 0.783501594 0.747011936 0.70678936 0.89752042 0.946963745 0.823549045 0.792879305 0.895918692 1 11.61874465 -9.5544923 1.342339651 0.999315155 0.783279258 0.313217762 0.084262086 0.330211055 1.071453785 0.063938142 0.01531169 2.79E-10 9.5544923 -0.216035897 SRS(ph)PLGFYVHLK ddPTM_HeLa_CUDC101_4h_R1 2 SRSPLGFYVHLK 12 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 S(0.072)RS(0.928)PLGFYVHLK;S(0.045)RS(0.955)PLGFYVHLK ; 126.71 0.0010309 21313000 8082.2 5790.8 4239.6 5709.6 6599.8 6267.8 5181.4 5461.3 4978.5 3940.8 TRUE FALSE FALSE 7134.816768 5969.207684 4468.8056 5942.462167 6112.945903 6148.252158 5381.248334 6082.992317 4773.284123 3917.359946 1.821332955 1.523783305 1.140769718 1.51695587 1.560475929 1.569488697 1.373692591 1.552829559 1.218495157 1 11.93566598 -9.554132522 1.331241051 1.000682501 1.536650214 0.432925398 0.174582082 0.276361016 0.87932632 0.132379886 0.031452953 2.79E-10 9.554132522 0.535967713 SETSS(ph)NPSS(ph)PEICPNK ddPTM_HeLa_CUDC101_4h_R1 1 SETSSNPSSPEICPNK 16 0 A0A1B0GV05;Q684P5-3;Q684P5-2;Q684P5 A0A1B0GV05 RAP1GAP2 Rap1 GTPase-activating protein 2 2 0 SET(0.006)S(0.074)S(0.92)NPS(0.1)S(0.9)PEICPNK 157.07 0.00082905 8654700 3915.1 2357 2886.9 2389.5 3444.8 3261.2 2975.3 2647.6 3504.9 2221.5 TRUE FALSE FALSE 3456.177913 2429.616376 3042.974546 2486.954138 3190.683967 3198.998044 3090.058318 2948.992082 3360.426539 2208.286419 1.565094945 1.100227015 1.377980012 1.126191837 1.444868718 1.448633663 1.399301418 1.335421011 1.521734911 1 11.10871159 -9.553690552 1.307367749 0.998907573 1.37097731 0 0.209479926 0.310391203 0.94601699 0.10258263 0.023942301 2.79E-10 9.553690552 0.372069737 AWLDEDSNLS(ph)PSPLRDLSGGLGGQEEEEEQR ddPTM_HeLa_CUDC101_4h_R1 1 AWLDEDSNLSPSPLRDLSGGLGGQEEEEEQR 31 1 Q9C086;B8ZZ93;B8ZZH7;F8WCL7;J3KQ70 Q9C086 INO80B;INO80B-WBP1 INO80 complex subunit B 1 0 AWLDEDS(0.179)NLS(0.461)PS(0.358)PLRDLS(0.001)GGLGGQEEEEEQR 59.263 0.00086032 4843500 266.36 149.62 177.93 172.55 239.73 217.51 193.53 191.91 174.48 144.31 TRUE FALSE FALSE 235.1376846 154.2296149 187.549434 179.5873348 222.0455955 213.3613591 200.9945169 213.7562587 167.2878605 143.4516377 1.639142559 1.075133176 1.307405318 1.2519016 1.547877731 1.487340002 1.401130863 1.490092843 1.166162082 1 7.164420628 -9.553217886 1.298595431 0.998126848 1.420448718 0.367997835 0.160058232 0.32160844 0.964707399 0.120343623 0.027915226 2.80E-10 9.553217886 0.42232187 ATASS(ph)PTQQDGR ddPTM_HeLa_CUDC101_4h_R1 1 ATASSPTQQDGR 12 0 Q9BV73-2;Q9BV73 Q9BV73-2 CEP250 Centrosome-associated protein CEP250 1 0 AT(0.005)AS(0.097)S(0.893)PT(0.005)QQDGR 138.2 0.0013053 4958600 1906.7 2078 3102 3227 2760.7 2119.8 2259 1314.5 3191.9 3550.4 TRUE FALSE FALSE 1683.199516 2142.020717 3269.703503 3358.611008 2557.048661 2079.368347 2346.130387 1464.137367 3060.328531 3529.282063 0.476924056 0.606928174 0.926450038 0.951641424 0.724523746 0.589176016 0.664761372 0.414854166 0.86712495 1 11.78515902 -9.553179017 1.333501093 0.999335941 0.65812531 0.276686918 0.166104029 0.414003851 1.323116408 0.126249791 0.030095526 2.80E-10 9.553179017 -0.341210631 CMVEVPQELETS(ph)TGHSLEK ddPTM_HeLa_CUDC101_4h_R1 2 CMVEVPQELETSTGHSLEK 19 0 Q32MZ4-3;Q32MZ4-2;Q32MZ4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 CMVEVPQELET(0.281)S(0.676)T(0.042)GHS(0.001)LEK;CMVEVPQELET(0.155)S(0.813)T(0.026)GHS(0.006)LEK ; 89.462 0.0023739 16209100 4755 3179.2 2769.5 2928.9 3857.5 4264 3233.3 2926.3 4002.6 2343.4 TRUE FALSE FALSE 4197.626108 3277.147384 2919.227547 3048.353202 3572.93991 4182.671304 3358.009464 3259.418163 3837.611134 2329.461353 1.801972848 1.406826252 1.253177068 1.308608618 1.533805189 1.795552993 1.441539032 1.399215385 1.647424255 1 11.18578068 -9.55303621 1.322528272 0.99999927 1.525278482 0 0.263611926 0.304491793 0.954220918 0.142554915 0.033704324 2.80E-10 9.55303621 0.525279212 KQVAPEKPVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 KQVAPEKPVKK 11 3 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 1 ; KQVAPEK(0.001)PVK(0.999)K;KQVAPEK(0.003)PVK(0.997)K 71.555 0.023888 62944000 15678.9 22666.8 32802.2 44044 44035 41527 47790 52964 10054.3 11400.9 FALSE TRUE FALSE 13841.04311 23365.13724 34575.58615 45840.30469 40786.62578 40734.94166 49633.27631 58993.20767 9639.857498 11333.08694 1.221295061 2.061674579 3.050853341 4.044820704 3.598898164 3.594337702 4.379501946 5.205396198 0.850594154 1 13.46825326 -6.661131495 0.937518335 1.030455024 4.319167732 0.92067342 0.409494044 0.097468419 0.171235558 0.082979774 0.139293382 2.18E-07 6.661131495 3.288712708 up SGYIS(ph)ESENSEISQQVR ddPTM_HeLa_CUDC101_4h_R1 1 SGYISESENSEISQQVR 17 0 A0A075B754;Q96QE3-2;Q96QE3 A0A075B754 ATAD5 ATPase family AAA domain-containing protein 5 1 0 SGYIS(0.611)ES(0.387)ENS(0.002)EISQQVR 199.09 7.01E-33 0 793.23 702.54 877.99 855.71 723.93 1009 835.22 624.29 729.4 995.5 TRUE FALSE FALSE 700.2487819 724.1844247 925.4567952 890.6095525 670.5271262 989.7550061 867.4347152 695.3566501 699.3338233 989.5787217 0.707623119 0.731810829 0.935202804 0.899988584 0.677588464 1.000178141 0.876569692 0.702679468 0.706698525 1 9.950670669 -9.552546724 1.344605784 0.999224222 0.809193885 0 0.138087032 0.436977069 1.424668627 0.074381441 0.01790003 2.80E-10 9.552546724 -0.190030338 GAPANVS(ph)SSDLTGR ddPTM_HeLa_CUDC101_4h_R1 1 GAPANVSSSDLTGR 14 0 H0Y5S9;H0Y682;P49674 H0Y5S9 CSNK1E Casein kinase I isoform epsilon 1 0 GAPANVS(0.602)S(0.198)S(0.198)DLT(0.002)GR 81.128 0.024065 12561000 573.32 516.5 656.89 532.7 808.38 660.9 763.81 480.78 635.33 830.95 TRUE FALSE FALSE 506.1162987 532.4127528 692.4034604 554.4258085 748.7474179 648.2944336 793.2704076 535.5100518 609.1414285 826.0074724 0.612726053 0.644561666 0.838253265 0.671211614 0.906465671 0.784852989 0.960367108 0.648311389 0.737452685 1 9.690011023 -9.552443571 1.348153926 0.998812946 0.747395523 0 0.136838353 0.359980012 1.181036495 0.081131306 0.019580026 2.80E-10 9.552443571 -0.251417422 S(ph)PGPIVSR ddPTM_HeLa_CUDC101_4h_R1 2 SPGPIVSR 8 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 S(1)PGPIVSR;S(1)PGPIVSR ; 104.42 0.014792 46369000 986.44 879.41 556.24 717.17 751.25 699.51 731.1 530.8 843.54 521.345 TRUE FALSE FALSE 870.8109985 906.5035797 586.3120169 746.4192925 695.8317842 686.1680122 759.2987719 591.2241264 808.7689242 518.2440168 1.680310762 1.749182915 1.131343533 1.440285403 1.342672104 1.324024957 1.465137556 1.140821905 1.560594813 1 9.017487745 -9.552216566 1.353184003 1.002508858 1.443401788 0 0.255634698 0.351746426 1.164343902 0.139162598 0.033724693 2.80E-10 9.552216566 0.440892929 LSCS(ph)ELSLYQPLQNSSK ddPTM_HeLa_CUDC101_4h_R1 1 LSCSELSLYQPLQNSSK 17 0 Q12923-3;Q12923;Q12923-4 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 0 LS(0.021)CS(0.979)ELSLYQPLQNSSK 135.69 0.00022858 12199000 724.85 549.41 371.92 449.4 449.7 613.03 559.22 667.1 558.71 393.32 TRUE FALSE FALSE 639.8841818 566.3366709 392.0271202 467.7284745 416.5265269 601.3374741 580.7893027 743.0399675 535.6797373 390.9805151 1.636613992 1.448503567 1.002676873 1.196296123 1.065338325 1.538024149 1.485468662 1.900452679 1.37009318 1 8.610952901 -9.552197595 1.327663004 1.000476863 1.416855856 0.032254068 0.277318861 0.514065043 1.626485297 0.190922389 0.045381665 2.80E-10 9.552197595 0.416378993 LSSERPSS(ph)DGEGVVENGITTCNGK ddPTM_HeLa_CUDC101_4h_R1 3 LSSERPSSDGEGVVENGITTCNGK 24 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 LS(0.002)S(0.011)ERPS(0.389)S(0.598)DGEGVVENGITTCNGK;LS(0.012)S(0.012)ERPS(0.213)S(0.727)DGEGVVENGIT(0.026)T(0.01)CNGK;LS(0.109)S(0.109)ERPS(0.346)S(0.433)DGEGVVENGIT(0.003)TCNGK ;; 111 3.92E-07 255588000 7513 6313.32 5485.41 5649.08 6681.4 6725 6069.84 4441.93 7271.5 5389.2 TRUE FALSE FALSE 6632.337529 6507.825906 5781.967857 5879.4739 6188.526433 6596.73183 6303.955762 4947.581356 6971.765692 5357.144799 1.23803589 1.214793729 1.079300275 1.097501397 1.155191182 1.231389495 1.176737982 0.923548185 1.301395791 1 12.38724858 -9.552010907 1.344263117 1.000646861 1.155409861 0 0.128729451 0.448893228 1.462943874 0.062204749 0.014978891 2.81E-10 9.552010907 0.154762999 SLAALDALNT(ph)DDENDEEEYEAWK ddPTM_HeLa_CUDC101_4h_R1 3 SLAALDALNTDDENDEEEYEAWK 23 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 0 SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(0.997)DDENDEEEY(0.003)EAWK ;; 133.44 2.23E-07 39179000 19646.99 19122.42 16382.79 16909.2 20980.06 17741.97 17676.46 16716.13 20284.86 19738.44 TRUE FALSE FALSE 17343.99962 19711.55909 17268.49318 17598.83026 19432.40277 17403.57148 18358.24698 18619.02667 19448.70949 19621.03488 0.883949278 1.004613631 0.880101039 0.896936903 0.99038623 0.886985401 0.935641117 0.948931939 0.991217314 1 14.26011352 -9.551735725 1.297617241 1.000321185 0.923568092 0.287674861 0.04168596 0.425611755 1.27518003 0.0289129 0.006717973 2.81E-10 9.551735725 -0.076753093 ETNLDSLPLVDT(ph)HSKR ddPTM_HeLa_CUDC101_4h_R1 1 ETNLDSLPLVDTHSKR 16 1 P08670 P08670 VIM Vimentin 1 0 ETNLDSLPLVDT(0.835)HS(0.165)KR 64.842 0.03631 14594000 6443.8 6062.8 6325.6 6114 8085.4 6819.3 6583.5 6628.5 6748.9 8238.2 TRUE FALSE FALSE 5688.467532 6249.587682 6667.58107 6363.355347 7488.95615 6689.233214 6837.4278 7383.061647 6470.707485 8189.19882 0.694630532 0.763150074 0.81419211 0.777042478 0.91449192 0.816836099 0.834932446 0.901560923 0.79015147 1 12.9995066 -9.551423526 1.341575724 0.99923115 0.800451516 0 0.088354467 0.277387885 0.899937337 0.049323329 0.011864267 2.81E-10 9.551423526 -0.198779633 LTIS(ph)Y(ph)LKMR ddPTM_HeLa_CUDC101_4h_R1 1 LTISYLKMR 9 1 H0YHB6;F8VS42;F8VR32;Q8IXF0-6;Q8IXF0-4;Q8IXF0-2;Q8IXF0-3;Q8IXF0 H0YHB6 NPAS3 Neuronal PAS domain-containing protein 3 2 0 LTIS(1)Y(1)LKMR 105.14 0.013606 10321000 858.32 909.78 990.53 750.39 1184.5 876.15 805.76 1005.1 1012.8 1198.5 TRUE FALSE FALSE 757.7090307 937.8092434 1044.081048 780.9941477 1097.121795 859.4388985 836.8384331 1119.516521 971.0519553 1191.371269 0.635997401 0.78716792 0.876369168 0.655542204 0.920889922 0.721386289 0.702416161 0.939687359 0.815070819 1 10.21840736 -9.551047535 1.326140488 0.999713453 0.761395411 0.071234535 0.115454583 0.333634665 1.053221431 0.070848771 0.016852532 2.81E-10 9.551047535 -0.238318042 IS(ph)VQPS(ph)S(ph)S(ph)LS(ph)AR ddPTM_HeLa_CUDC101_4h_R1 1 ISVQPSSSLSAR 12 0 F5H6W4;Q9H992;C9J159 F5H6W4 7-Mar E3 ubiquitin-protein ligase MARCH7 5 0 IS(1)VQPS(1)S(1)S(1)LS(1)AR 96.707 0.0055736 9961500 337.63 332.21 347.73 308.51 501.78 258.52 340.19 435.5 421.19 453.82 TRUE FALSE FALSE 298.0535232 342.4449963 366.5293356 321.0923713 464.7646891 253.5891617 353.3112423 485.0755596 403.8283699 451.1206585 0.660695798 0.759098458 0.812486258 0.711766055 1.030244748 0.562131565 0.783185686 1.075267892 0.895167096 1 8.817369544 -9.550769524 1.335814532 0.999333135 0.777930824 0.109626188 0.150772725 0.499426733 1.604257585 0.09874018 0.023672495 2.81E-10 9.550769524 -0.221402311 AQEEAERLEADR ddPTM_HeLa_CUDC101_4h_R1 1 AQEEAERLEADR 12 1 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 132.86 0.0018328 9410800 2100.3 2635.2 2217.9 2495 3111.8 2613.7 3038.4 3430.1 2183.9 2288.4 FALSE FALSE TRUE 1854.106018 2716.387389 2337.806383 2596.756884 2882.248714 2563.848027 3155.592106 3820.568719 2093.878718 2274.788495 0.815067432 1.194127452 1.027702746 1.141537725 1.267040307 1.127070949 1.38720242 1.67952701 0.920471825 1 11.1515167 -1 0.334786422 0.916008558 8.944144361 0.805340291 0.103928214 17.10302827 0.216533185 0.037979259 86.54336534 0.1 1 8.028135803 ENS(ph)KETFSGK ddPTM_HeLa_CUDC101_4h_R1 1 ENSKETFSGK 10 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 ENS(1)KETFSGK 111.31 0.039427 4251600 974.06 829.36 1007 1634 1189.7 1067.5 1371.9 849.5 1301.8 1573 TRUE FALSE FALSE 859.8821634 854.9115986 1061.441466 1700.641583 1101.938201 1047.139216 1424.814643 946.2036462 1248.139253 1563.643726 0.54992205 0.546743215 0.678825648 1.087614496 0.704724601 0.669678904 0.911214376 0.60512739 0.798224834 1 10.61069612 -9.550685133 1.350471879 0.998357811 0.706170317 0.110862218 0.168791127 0.438357666 1.445032811 0.114760487 0.027823748 2.81E-10 9.550685133 -0.292187494 FIQELSGSS(ph)PKR ddPTM_HeLa_CUDC101_4h_R1 1 FIQELSGSSPKR 12 1 I3L254;Q01664 I3L254 TFAP4 Transcription factor AP-4 1 0 FIQELSGS(0.13)S(0.87)PKR 104.09 0.0043862 47773000 1394.6 1558.6 1178 1400.8 1500.6 1202.2 1194 1422 1559.5 1582.4 TRUE FALSE FALSE 1231.127102 1606.618619 1241.686243 1457.930679 1389.903728 1179.270038 1240.05298 1583.874732 1495.21675 1572.987814 0.782667921 1.021380206 0.789380713 0.926854401 0.883607435 0.749700682 0.788342394 1.006921171 0.950558381 1 10.61929178 -9.55034642 1.285217315 1.000887139 0.856363926 0.163752404 0.091336909 0.496978192 1.455923902 0.063316515 0.014600154 2.82E-10 9.55034642 -0.144523213 SASNVPS(ph)GKSTDEEEEAQTPQAPR ddPTM_HeLa_CUDC101_4h_R1 1 SASNVPSGKSTDEEEEAQTPQAPR 24 1 Q9P2K3;Q9P2K3-3 Q9P2K3 RCOR3 REST corepressor 3 1 0 SAS(0.001)NVPS(0.333)GKS(0.333)T(0.333)DEEEEAQTPQAPR 71.428 0.00039221 9520700 1237 1082.4 1054.3 1208.3 1303.1 1026.3 1086 1287.9 1137.9 1278.3 TRUE FALSE FALSE 1092.000735 1115.747461 1111.298647 1257.579697 1206.972909 1006.725037 1127.887384 1434.50933 1090.99528 1270.696615 0.85937172 0.878059679 0.874558596 0.98967738 0.949851361 0.792262312 0.887613432 1.128915678 0.858580457 1 10.31140391 -9.550262414 1.346420546 0.999542682 0.908092975 0 0.097017433 0.71124672 2.328376037 0.058209353 0.014079646 2.82E-10 9.550262414 -0.091449707 GDS(ph)PKIDLAGSSLSGILDKDLSDR ddPTM_HeLa_CUDC101_4h_R1 1 GDSPKIDLAGSSLSGILDKDLSDR 24 2 Q5JPT2;Q96B97-2;Q96B97;Q96B97-3 Q5JPT2 SH3KBP1 SH3 domain-containing kinase-binding protein 1 1 0 GDS(1)PKIDLAGSSLSGILDKDLSDR 61.304 0.0024489 14215000 1337.1 1321.8 986.42 1443.5 1340.6 1204 1123.2 945.75 1220.7 1674.5 TRUE FALSE FALSE 1180.367165 1362.523091 1039.748849 1502.372169 1241.706609 1181.035706 1166.5222 1053.410357 1170.382229 1664.54 0.709125143 0.818558335 0.624646358 0.902574988 0.745975831 0.70952678 0.700807551 0.632853736 0.703126527 1 10.70090782 -9.549936822 0.533368383 1.082682239 0.724544695 0 0.121430191 0.874226765 0.288894854 0.167931578 0.018220225 2.82E-10 9.549936822 -0.358137544 VKAS(ph)PITNDGEDEFVPSDGLDKDEYTFSPGK ddPTM_HeLa_CUDC101_4h_R1 2 VKASPITNDGEDEFVPSDGLDKDEYTFSPGK 31 2 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 0 VKAS(0.5)PIT(0.5)NDGEDEFVPSDGLDKDEYTFSPGK;VKAS(0.693)PIT(0.306)NDGEDEFVPS(0.001)DGLDKDEYTFSPGK ; 63.042 0.00037344 205836000 12565.9 9258.4 10168.7 10030.9 9547.8 10568.8 10146.4 11147.2 7876 9394.3 TRUE FALSE FALSE 11092.94425 9543.64033 10718.45068 10440.00346 8843.477816 10367.21775 10537.75005 12416.15219 7551.347946 9338.422286 1.187882055 1.021975665 1.147779609 1.117962236 0.946999134 1.110168017 1.128429378 1.329577075 0.808632092 1 13.18896311 -9.549583521 1.297116124 0.999538898 1.123960009 0.306059785 0.113094327 0.614222015 1.840256907 0.067549552 0.01574494 2.82E-10 9.549583521 0.124421111 ANLPQS(ph)FQVDTSK ddPTM_HeLa_CUDC101_4h_R1 1 ANLPQSFQVDTSK 13 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 1 0 ANLPQS(0.908)FQVDT(0.087)S(0.005)K 128.45 0.0013221 6869900 2185.9 2442 2113 2462.9 2366.3 2422.9 2101.6 1634.1 3152.5 2766.2 TRUE FALSE FALSE 1929.672116 2517.235126 2227.235171 2563.347708 2191.742763 2376.687219 2182.659416 1820.119339 3022.552616 2749.746519 0.701763636 0.915442608 0.809978358 0.932212366 0.797070838 0.864329567 0.793767498 0.66192259 1.099211362 1 11.42508292 -9.549575483 1.305864543 1.000410365 0.803555124 0.529529189 0.086813579 0.339753787 1.034448415 0.059248704 0.013906116 2.82E-10 9.549575483 -0.196855241 AQHEDQVEQYK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 AQHEDQVEQYKK 12 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 AQHEDQVEQYK(1)K 139.78 6.95E-08 0 6934.1 2561.5 2970.3 2550.1 6941.2 5766.5 6769.8 5754.8 6417.3 4243.3 FALSE TRUE FALSE 6121.295309 2640.416779 3130.883403 2654.1041 6429.161505 5656.51362 7030.913454 6409.90317 6152.776178 4218.060663 1.451210829 0.625978854 0.742256609 0.629223786 1.524198445 1.341022349 1.666859255 1.519632761 1.45867418 1 12.04236413 -5.640047926 18.98563941 1.092640919 1.511974202 0.40536999 0.29663482 1.798368312 286.5638518 0.048658733 0.097317597 2.29E-06 5.640047926 0.419333282 NY(ph)T(ph)KSTLPVLY(ph)KWNS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 NYTKSTLPVLYKWNSK 16 2 Q96MW7 Q96MW7 TIGD1 Tigger transposable element-derived protein 1 4 0 NY(0.957)T(0.81)KS(0.135)T(0.135)LPVLY(0.965)KWNS(0.998)K 55.213 0.0028023 0 600.4 465.19 477.12 358.08 423.99 474.92 520.67 393.3 407.1 364.78 TRUE FALSE FALSE 530.0220221 479.5219525 502.9145504 372.6840502 392.7131024 465.8616923 540.7524163 438.0716822 390.3191657 362.6102723 1.461685072 1.322416901 1.386928581 1.027781281 1.083017036 1.284744884 1.491277158 1.208106101 1.076415081 1 8.502275985 -9.54924466 1.33446075 1.000960082 1.302586124 0.308812228 0.14337162 0.401711133 1.288055116 0.108069219 0.025946804 2.82E-10 9.54924466 0.301626042 AQIHDLVLVGGSTR ddPTM_HeLa_CUDC101_4h_R1 2 AQIHDLVLVGGSTR 14 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 83.856 0.019611 26969000 4315.3 3736.8 4168.8 4072.3 4375.8 4121 3719.6 3846.8 4056.1 4062.6 FALSE FALSE TRUE 3809.467076 3851.926379 4394.177938 4238.385996 4053.005952 4042.398791 3863.066218 4284.704163 3888.905841 4038.435475 0.943302697 0.953816497 1.088089179 1.049511877 1.003607951 1.000981399 0.956574951 1.060981212 0.962973376 1 11.97958077 AQK(ac)LLVGVDEK ddPTM_HeLa_CUDC101_4h_R1 2 AQKLLVGVDEK 11 1 P53396;P53396-2 P53396 ACLY ATP-citrate synthase 0 1 ; AQK(1)LLVGVDEK;AQK(1)LLVGVDEK 129.89 0.001008 806980 488.83 239.275 286.447 270.39 378.81 407.17 551.52 566.2 578.3 405.01 FALSE TRUE FALSE 431.5300884 246.6467791 301.9331913 281.4176729 350.865941 399.4039106 572.7923111 630.6539193 554.4622292 402.6009825 1.071855527 0.612633326 0.749956419 0.698998972 0.871497975 0.992058957 1.422729541 1.566449032 1.377200388 1 8.653206883 -4.718361078 3.361088315 0.944235776 1.538976108 0.558178983 0.205256179 0.123923128 2.789139801 0.026450955 0.113752895 1.91E-05 4.718361078 0.594740332 LTPRPSPSPMIESTPMSIAGDAT(ph)PLLDEMDR ddPTM_HeLa_CUDC101_4h_R1 1 LTPRPSPSPMIESTPMSIAGDATPLLDEMDR 31 1 Q7KZ85-2;Q7KZ85;Q7KZ85-3 Q7KZ85-2;Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 0 LTPRPSPSPMIES(0.004)T(0.009)PMS(0.244)IAGDAT(0.742)PLLDEMDR 49.479 0.025571 30101000 167.3 202.99 153.31 176.01 344.06 177.92 235.2 191.49 285.98 303.6 TRUE FALSE FALSE 147.6893476 209.2438813 161.5984023 183.1884486 318.6793793 174.5264724 244.2717428 213.2884476 274.1917834 301.7941737 0.489371103 0.693333071 0.535458986 0.606997963 1.055949409 0.578296361 0.809398471 0.706734809 0.908539022 1 8.237421144 -9.54885695 1.331464693 0.99907752 0.665069863 0.316686868 0.15517587 0.371474079 1.184944795 0.110560105 0.026500928 2.83E-10 9.54885695 -0.334007657 AAS(ph)PPASASDLIEQQQK ddPTM_HeLa_CUDC101_4h_R1 2 AASPPASASDLIEQQQK 17 0 Q5VSL9;Q5VSL9-3;Q5VSL9-2 Q5VSL9 STRIP1 Striatin-interacting protein 1 1 0 AAS(0.963)PPAS(0.019)AS(0.019)DLIEQQQK;AAS(0.982)PPAS(0.014)AS(0.003)DLIEQQQK ; 157.74 5.72E-05 544530000 2494.2 2321.4 2385.84 2092.76 2564.99 2295.75 2200.34 2245.66 2039.39 2563.4 TRUE FALSE FALSE 2201.833657 2392.919582 2514.825727 2178.111798 2375.775798 2251.962394 2285.207851 2501.296857 1955.325481 2548.152783 0.864090125 0.939080105 0.986921092 0.854780692 0.932352178 0.883762704 0.896809589 0.981611807 0.767350174 1 11.31523607 -9.54858683 1.30889095 1.000112758 0.910462042 0 0.08395639 0.383009822 1.173103383 0.030424174 0.007169413 2.83E-10 9.54858683 -0.089650716 VSCHDS(ph)DDDIMR ddPTM_HeLa_CUDC101_4h_R1 2 VSCHDSDDDIMR 12 0 Q76FK4-2;Q76FK4-4;Q76FK4;F8WE42;F5H101;F5GWN9 Q76FK4-2 NOL8 Nucleolar protein 8 1 0 VSCHDS(1)DDDIMR;VSCHDS(1)DDDIMR ; 177.38 3.05E-07 11814500 3750.8 2334.5 1982.72 2277.73 3687 3065.5 3089.5 1891.65 2729.1 1852.09 TRUE FALSE FALSE 3311.13691 2406.423178 2089.911841 2370.625675 3415.017356 3007.030695 3208.66305 2106.98779 2616.605343 1841.073686 1.79848147 1.307075972 1.135159259 1.287632153 1.854905309 1.633302739 1.742821634 1.144434253 1.421238793 1 10.84633165 -9.547271214 1.300038944 0.998650769 1.527472363 0.049404725 0.28329713 0.412139221 1.242686605 0.192538601 0.04515399 2.84E-10 9.547271214 0.528821594 EGQPSPADEKGNDS(ph)DGEGESDDPEKK ddPTM_HeLa_CUDC101_4h_R1 5 EGQPSPADEKGNDSDGEGESDDPEKK 26 2 O75351;K7EKZ3 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 1 0 EGQPSPADEKGNDS(0.999)DGEGES(0.001)DDPEKK;EGQPS(0.001)PADEKGNDS(0.991)DGEGES(0.009)DDPEKK;EGQPSPADEKGNDS(0.997)DGEGES(0.002)DDPEKK;EGQPS(0.006)PADEKGNDS(0.991)DGEGES(0.003)DDPEKK;EGQPSPADEKGNDS(1)DGEGESDDPEKK ;;;; 123.29 3.22E-10 122128000 10426.8 10454 10899.8 10178.5 11728.8 9525.5 9328.86 10503.7 10912.3 12500 TRUE FALSE FALSE 9204.58631 10776.07535 11489.07616 10593.62323 10863.58979 9343.816958 9688.677255 11699.39875 10462.49038 12425.64944 0.740773056 0.867244436 0.924625808 0.852560928 0.874287484 0.751978156 0.779732061 0.941552295 0.842007528 1 13.60103364 -9.546982207 1.311536548 1.000060049 0.829093309 0 0.080307452 0.324996278 1.000889175 0.049219481 0.011653141 2.84E-10 9.546982207 -0.17096674 S(ph)MDPAS(ph)GY(ph)SNNIFT(ph)IDQMLKK ddPTM_HeLa_CUDC101_4h_R1 1 SMDPASGYSNNIFTIDQMLKK 21 1 Q8N7B9;Q8N7B9-2 Q8N7B9 EFCAB3 EF-hand calcium-binding domain-containing protein 3 4 0 S(0.845)MDPAS(0.862)GY(0.648)S(0.648)NNIFT(0.997)IDQMLKK 40.186 0.0031218 0 150.94 233.33 226.02 261.55 458.62 270.35 39.15 165.52 215.23 381.84 TRUE FALSE FALSE 133.247042 240.5186207 238.2393249 272.2171395 424.7885163 265.1935242 40.66002861 184.3621277 206.3581283 379.5687987 0.351048459 0.633662781 0.62765782 0.7171747 1.119134443 0.698670505 0.107121631 0.485714654 0.543664624 1 8.568217595 -9.54683321 1.31850872 0.999588506 0.572663589 0 0.283823292 0.502725517 1.568027723 0.190430791 0.045342271 2.84E-10 9.54683321 -0.426924916 KLPS(ph)DSGDLEALEGK ddPTM_HeLa_CUDC101_4h_R1 1 KLPSDSGDLEALEGK 15 1 G3V5V3;O60524-4;O60524-5;O60524-3;O60524;O60524-2 G3V5V3 NEMF Nuclear export mediator factor NEMF 1 0 KLPS(0.995)DS(0.005)GDLEALEGK 75.611 0.015343 10322000 1909.2 2400.5 2496 1859.8 2287.5 1864.5 2156.2 1702.1 1796 2832.6 TRUE FALSE FALSE 1685.40647 2474.45656 2630.94131 1935.650683 2118.755682 1828.937769 2239.365356 1895.860184 1721.96812 2815.751569 0.598563626 0.878790795 0.934365566 0.687436599 0.752465418 0.649538045 0.795299337 0.673305204 0.611548312 1 11.45930434 -9.546615058 1.293947245 1.000933388 0.734379654 0 0.154216311 0.325596545 0.971029604 0.076523225 0.017878996 2.84E-10 9.546615058 -0.266553735 AQMVQEDLEK ddPTM_HeLa_CUDC101_4h_R1 1 AQMVQEDLEK 10 0 P26038 P26038 MSN Moesin 0 0 148.32 0.0029256 27435000 1414.1 1375.1 905.47 1426.3 1363.2 1273.4 1188.3 1236.5 1123.4 1359.3 FALSE FALSE TRUE 1248.341342 1417.465201 954.4224471 1484.470679 1262.639452 1249.112017 1234.133129 1377.258162 1077.092977 1351.214823 0.923865932 1.049030233 0.706343973 1.098619297 0.934447602 0.924436289 0.913350792 1.019274018 0.797129337 1 10.40004134 -9.436444004 1.03901013 1.001695502 0.94255124 0 0.117971942 1.587068917 2.91716219 0.072254766 0.016069395 3.66E-10 9.436444004 -0.059144262 CSDAAGYPHATHDLEGPPLDAYSIQGQHT(ph)ISPLDLAK ddPTM_HeLa_CUDC101_4h_R1 1 CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK 37 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 CSDAAGYPHATHDLEGPPLDAYS(0.004)IQGQHT(0.498)IS(0.498)PLDLAK 79.911 3.79E-08 13784000 1741.8 575.36 656.88 497.99 2458.8 1550.1 1627.1 537.77 1805.7 615.06 TRUE FALSE FALSE 1537.628844 593.0861596 692.3929198 518.3001847 2277.419223 1520.534425 1689.857792 598.9875631 1731.268282 611.4015958 2.514924487 0.970043526 1.13246829 0.847724619 3.724915405 2.486965091 2.76390805 0.97969578 2.831638474 1 9.255976507 -9.546211067 1.2560264 0.989128005 2.010338923 0 1.069904823 0.778330819 2.161177377 0.693577244 0.157245311 2.84E-10 9.546211067 1.021210918 AQPAVNGK(ac)LGVPNGR ddPTM_HeLa_CUDC101_4h_R1 1 AQPAVNGKLGVPNGR 15 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 0 1 AQPAVNGK(1)LGVPNGR 117.14 0.0084648 1093200 0 0 0 0 157.81 158.83 181.97 68.42 0 0 FALSE TRUE FALSE 0 0 0 0 146.1686707 155.8005824 188.9886439 76.20865624 0 0 0 NHETDGGS(ph)AHGDDDDDGPHFEPVVPLPDKIEVK ddPTM_HeLa_CUDC101_4h_R1 1 NHETDGGSAHGDDDDDGPHFEPVVPLPDKIEVK 33 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NHET(0.143)DGGS(0.857)AHGDDDDDGPHFEPVVPLPDKIEVK 44.953 0.014045 33279000 868.68 965.07 1507.1 1208 1696 1721.3 1441 924.09 1393.7 2210.5 TRUE FALSE FALSE 766.8546472 994.8026628 1588.578385 1257.267461 1570.889459 1688.46907 1496.579853 1029.28467 1336.251096 2197.351848 0.348990376 0.45272798 0.722951304 0.572173939 0.714901194 0.768410882 0.681083393 0.468420509 0.608118858 1 11.10155018 -9.545208091 1.331474712 0.99840691 0.571793799 0.026893735 0.174994728 0.280967345 0.89755767 0.106584545 0.025700259 2.85E-10 9.545208091 -0.426613111 RLRSSSSSLS(ph)SSGAPSPK ddPTM_HeLa_CUDC101_4h_R1 1 RLRSSSSSLSSSGAPSPK 18 2 Q6RI45-3;Q6RI45-4;Q6RI45-2;Q6RI45 Q6RI45-3 BRWD3 Bromodomain and WD repeat-containing protein 3 1 0 RLRS(0.003)S(0.003)S(0.003)S(0.038)S(0.038)LS(0.399)S(0.399)S(0.116)GAPS(0.001)PK 76.158 0.0024617 0 1259.7 1121.4 1161.9 915.63 1151.1 1053.2 1039.6 1009.9 1519.1 1467.7 TRUE FALSE FALSE 1112.039876 1155.949005 1224.715829 952.9733491 1066.185646 1033.111965 1079.69772 1124.862934 1456.482055 1458.970055 0.762208842 0.792304819 0.839438633 0.653182254 0.730779664 0.708110465 0.740041042 0.770997958 0.998294687 1 10.51073456 -9.544847991 0.373533986 1.117361036 0.72616484 0.840504492 0.044037226 0.950429566 0.147811167 0.15409549 0.016797752 2.85E-10 9.544847991 -0.391196196 LGIAVIHGEAQDAESDLVDGRHS(ph)PPMVR ddPTM_HeLa_CUDC101_4h_R1 8 LGIAVIHGEAQDAESDLVDGRHSPPMVR 28 1 I3L0S1;E7EPA1;O60256-4;O60256-3;O60256-2;O60256;C9K0K7 I3L0S1 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 0 LGIAVIHGEAQDAES(0.149)DLVDGRHS(0.851)PPMVR;LGIAVIHGEAQDAES(0.17)DLVDGRHS(0.83)PPMVR;LGIAVIHGEAQDAES(0.01)DLVDGRHS(0.99)PPMVR;LGIAVIHGEAQDAES(0.003)DLVDGRHS(0.997)PPMVR;LGIAVIHGEAQDAES(0.277)DLVDGRHS(0.723)PPMVR;LGIAVIHGEAQDAES(0.206)DLVDGRHS(0.794)PPMVR;LGIAVIHGEAQDAES(0.229)DLVDGRHS(0.771)PPMVR;LGIAVIHGEAQDAES(0.027)DLVDGRHS(0.973)PPMVR ;;;;;;; 84.573 4.17E-07 816484200 20774.6 16264.1 15765.1 15741.88 18525.03 18221.2 16723.7 16219.3 18377.6 15644.3 TRUE FALSE FALSE 18339.43288 16765.17764 16617.40899 16383.90191 17158.47544 17873.66097 17368.73871 18065.63955 17620.06755 15551.24701 1.17929018 1.078060019 1.068557974 1.053542645 1.103350454 1.149339404 1.116871123 1.161684304 1.133032453 1 13.92474265 -9.544662923 1.302600508 0.99983752 1.118608357 0 0.055983106 0.30314401 0.919353846 0.03178109 0.00750037 2.85E-10 9.544662923 0.118770837 LNEQAS(ph)EEILKVEQK ddPTM_HeLa_CUDC101_4h_R1 4 LNEQASEEILKVEQK 15 1 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105-2 Q01105;Q01105-2 SET Protein SET 1 0 LNEQAS(1)EEILKVEQK;LNEQAS(1)EEILKVEQK;LNEQAS(1)EEILKVEQK;LNEQAS(1)EEILKVEQK ;;; 85.203 0.0086276 64264000 6815.7 6295.8 6151.6 6267.2 6160.1 6672.8 6446.4 6180.2 7591.7 7087.9 TRUE FALSE FALSE 6016.773978 6489.766136 6484.174104 6522.803505 5705.681696 6545.527458 6695.039807 6883.728987 7278.766913 7045.740856 0.853959023 0.921090666 0.92029699 0.92577965 0.809805784 0.929004854 0.9502251 0.977005701 1.033073322 1 12.7825357 -9.544411158 1.314488667 0.999914385 0.903587714 0.428235599 0.046931912 0.393943617 1.22102629 0.033590065 0.008004592 2.85E-10 9.544411158 -0.096326671 SPVPSPGS(ph)SSPQLQVK ddPTM_HeLa_CUDC101_4h_R1 2 SPVPSPGSSSPQLQVK 16 0 Q8N3F8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 SPVPSPGS(0.632)S(0.064)S(0.304)PQLQVK;SPVPS(0.004)PGS(0.506)S(0.407)S(0.084)PQLQVK ; 148.7 0.00020203 60020000 5940.3 5735.2 5275.1 5630.8 5716.3 5187.6 5316.5 6634.2 5796.6 6448.4 TRUE FALSE FALSE 5243.987039 5911.894714 5560.287862 5860.448362 5294.619937 5088.655173 5521.559186 7389.410512 5557.661695 6410.04463 0.818089006 0.922286046 0.867433565 0.91426015 0.825987999 0.793856434 0.861391691 1.152786125 0.867023869 1 12.64611869 -9.544198829 1.308928504 1.000009401 0.879761396 0 0.104067072 0.614891738 1.886859245 0.065352067 0.015511626 2.86E-10 9.544198829 -0.120248005 SDAPTSSSFFT(ph)GLKSPAPEQFQSR ddPTM_HeLa_CUDC101_4h_R1 1 SDAPTSSSFFTGLKSPAPEQFQSR 24 1 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 S(0.002)DAPT(0.027)S(0.073)S(0.073)S(0.207)FFT(0.507)GLKS(0.106)PAPEQFQS(0.005)R 56.404 0.011091 7953500 1108.2 1228.8 901.8 948.5 1335.2 1249.6 1042.7 788.41 1111.2 1266.1 TRUE FALSE FALSE 978.2984759 1266.657872 950.5540358 987.1839298 1236.704956 1225.765962 1082.917288 878.1594075 1065.395866 1258.569181 0.777310052 1.006426894 0.755265622 0.784370017 0.982627713 0.973936102 0.86043525 0.697744249 0.84651355 1 10.29756881 -9.543948667 1.28374863 1.000692965 0.852089164 0 0.109847969 0.555226546 1.626568421 0.072449502 0.016863714 2.86E-10 9.543948667 -0.148603801 S(ph)RSPGSPVGEGTGSPPK ddPTM_HeLa_CUDC101_4h_R1 3 SRSPGSPVGEGTGSPPK 17 1 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;P35611-5;A0A0A0MSR2 E7EV99 ADD1 Alpha-adducin 1 0 S(0.8)RS(0.154)PGS(0.045)PVGEGTGSPPK;S(0.616)RS(0.337)PGS(0.037)PVGEGT(0.003)GS(0.007)PPK;S(0.911)RS(0.075)PGS(0.014)PVGEGTGSPPK ;; 97.689 0.002237 169437000 17640.7 14374.8 16324.8 18354.5 16771 16915.9 16816.7 17598.4 15851 8554.9 TRUE FALSE FALSE 15572.88389 14817.67055 17207.36807 19103.07584 15533.83674 16593.25739 17465.32575 19601.73072 15197.61507 8504.015074 1.83123898 1.742432301 2.023440448 2.246359593 1.826647367 1.951226244 2.053774082 2.304997175 1.787110552 1 13.05392844 -9.54246557 0.286300603 0.39243123 2.156063315 0.314372959 0.284165898 1.143416178 0.109831934 0.687941695 0.089478636 2.87E-10 9.54246557 1.763632085 GES(ph)ENAGTNQETR ddPTM_HeLa_CUDC101_4h_R1 4 GESENAGTNQETR 13 0 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 GES(0.687)ENAGT(0.312)NQETR;GES(1)ENAGTNQETR;GES(1)ENAGTNQETR;GES(0.998)ENAGT(0.002)NQETR ;;; 196.97 1.81E-16 106417000 6931.1 5300.52 5368.95 5309.75 4810.79 5611.7 5435.3 4188.26 6603.6 4233.94 TRUE FALSE FALSE 6118.646965 5463.822739 5659.211677 5526.304556 4455.907606 5504.666172 5644.941342 4665.034589 6331.396813 4208.756337 1.453789784 1.298203626 1.344628015 1.313049299 1.058723112 1.307908021 1.341237385 1.108411658 1.504339122 1 12.03917827 -9.542222135 1.321034567 1.000798417 1.299704614 0 0.190284021 0.310431729 0.974475317 0.082163925 0.01974938 2.87E-10 9.542222135 0.298906197 KAEGAATEEEGTPKES(ph)EPQAAAEPAEAK ddPTM_HeLa_CUDC101_4h_R1 1 KAEGAATEEEGTPKESEPQAAAEPAEAK 28 2 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 KAEGAAT(0.04)EEEGT(0.165)PKES(0.796)EPQAAAEPAEAK 71.265 7.15E-05 9274800 1666.6 1586.5 1688.4 1760.1 1732 1747.2 1594.5 2354.2 1317.7 2261 TRUE FALSE FALSE 1471.243674 1635.378185 1779.680011 1831.884486 1604.233811 1713.875071 1656.000399 2622.192612 1263.383848 2247.551471 0.654598434 0.727626577 0.791830592 0.815057857 0.713769554 0.76255209 0.736801991 1.16668857 0.562115646 1 11.13413844 -9.541840548 1.325885393 0.999178463 0.771995071 0 0.189850792 0.447311252 1.416639485 0.090069179 0.021743743 2.87E-10 9.541840548 -0.227183392 AQPYDPNFYDETYDYGGFTMMFDDRR ddPTM_HeLa_CUDC101_4h_R1 3 AQPYDPNFYDETYDYGGFTMMFDDRR 26 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ;; ;; 70.391 0.00029261 34099000 4180.94 3943.68 3921.31 3684.35 4257.54 3854.23 3506.76 3584.65 4039.85 3689.62 FALSE FALSE TRUE 3690.856551 4065.180106 4133.30788 3834.613718 3943.469756 3780.716984 3642.016908 3992.712066 3873.325673 3667.673976 1.006320784 1.108380988 1.126956187 1.045516516 1.075196373 1.030821444 0.99300454 1.088622405 1.056071422 1 11.84064969 -7.370783528 8.510727585 1.002811208 1.064459166 0.178163045 0.039973563 0.251232353 17.86455661 0.00649527 0.007414521 4.26E-08 7.370783528 0.061647958 KVYEDSGIPLPAES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 KVYEDSGIPLPAESPK 16 1 Q8IXM2-2;F8W038;F8W1H0;H0YIS7;Q8IXM2;Q8IXM2-3 Q8IXM2-2 BAP18;C17orf49;RNASEK-C17orf49 Chromatin complexes subunit BAP18 1 0 KVY(0.05)EDS(0.01)GIPLPAES(0.94)PK;KVYEDSGIPLPAES(1)PK ; 111.45 0.0008143 157251000 10037.3 9255.1 9715.6 9508.5 8099.5 8856.2 8458.5 9193.7 9365.7 10959.2 TRUE FALSE FALSE 8860.74291 9540.238661 10240.85472 9896.297729 7502.016021 8687.28274 8784.747178 10240.27365 8979.641882 10894.01419 0.813358855 0.875732168 0.940044188 0.908416086 0.68863652 0.797436334 0.806382939 0.939990849 0.824273011 1 13.41124803 -9.54172968 0.642472417 1.036273172 0.839093129 0 0.091078897 1.110638973 0.573570803 0.133278839 0.016167876 2.87E-10 9.54172968 -0.197180042 AQQELEEQTRR ddPTM_HeLa_CUDC101_4h_R1 2 AQQELEEQTRR 11 1 P26038 P26038 MSN Moesin 0 0 ; ; 155.33 0.00024048 61283000 5359.3 5649.8 4864.9 5000.5 5111.4 5589 5422.1 5983.3 4691.8 5188.5 FALSE FALSE TRUE 4731.090978 5823.863641 5127.91121 5204.442004 4734.342205 5482.399137 5631.232213 6664.414687 4498.402018 5157.638571 0.91729789 1.1291725 0.994236246 1.009074586 0.917928261 1.06296691 1.091823736 1.292144572 0.872182484 1 12.33249496 -3.8606772 0.999259879 0.976256779 1.72627834 0.660229825 0.068034902 1.575005493 0.707633171 0.009687483 1.531567539 0.000137823 3.8606772 0.75002156 STSYGYS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 STSYGYSR 8 0 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 STSYGYS(1)R;STSYGYS(1)R ; 115.23 0.0091934 643820000 6797.4 5205.7 5025.7 5445.1 5016.3 5527.1 5419 4451.2 5770.4 4380.7 TRUE FALSE FALSE 6000.619076 5366.081447 5297.404544 5667.174714 4646.257543 5421.679776 5628.012645 4957.906616 5532.54167 4354.643402 1.377981736 1.232266561 1.216495601 1.301409597 1.066966251 1.245034157 1.292416422 1.138533321 1.270492474 1 12.08833887 -9.541190662 1.31398727 1.000415881 1.250156814 0 0.116212312 0.280739248 0.870490529 0.06194078 0.014832399 2.88E-10 9.541190662 0.249740933 S(ph)ISPEWK ddPTM_HeLa_CUDC101_4h_R1 1 SISPEWK 7 0 F5H6E2;O00159-2;O00159-3;O00159 F5H6E2 MYO1C Unconventional myosin-Ic 1 0 S(0.949)IS(0.051)PEWK 98.582 0.023549 18348000 6498.8 4804 4961.9 5479.7 5937.6 5171.2 4832.6 5536.7 5680.4 4843.5 TRUE FALSE FALSE 5737.020516 4952.005546 5230.155323 5703.185851 5499.595077 5072.567976 5018.995001 6166.975548 5446.251508 4814.690647 1.191565759 1.028519984 1.086291043 1.184538378 1.14225305 1.053560519 1.042433537 1.280866415 1.131173716 1 12.23322739 -9.540363309 1.275984622 0.999335298 1.127778398 0 0.084264793 0.472082869 1.365082697 0.053029444 0.012339022 2.88E-10 9.540363309 0.1284431 KNQKPSQVNGAPGSPT(ph)EPAGQK ddPTM_HeLa_CUDC101_4h_R1 1 KNQKPSQVNGAPGSPTEPAGQK 22 2 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 KNQKPSQVNGAPGS(0.115)PT(0.885)EPAGQK 74.029 0.0069086 13276000 2839.9 2264.2 2025 1987.3 2391.5 2393.3 1815.9 1932.5 2300.6 1714.8 TRUE FALSE FALSE 2507.011227 2333.957318 2134.477625 2068.350684 2215.08381 2347.65179 1885.939871 2152.487989 2205.768294 1704.600293 1.470732603 1.36921091 1.252186588 1.213393364 1.299474028 1.377244741 1.106382463 1.262752328 1.294009102 1 10.73521777 -9.540292721 1.321124883 1.000991552 1.311351564 0 0.129824421 0.277879339 0.873100117 0.076284096 0.018394738 2.88E-10 9.540292721 0.310360012 FTQAGSEVS(ph)ALLGR ddPTM_HeLa_CUDC101_4h_R1 1 FTQAGSEVSALLGR 14 0 P06576;H0YH81;F8W0P7 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 1 0 FTQAGS(0.003)EVS(0.997)ALLGR 103.67 0.0057398 2744500 681.72 769.28 440.05 488.57 731.78 683.94 522.64 630.43 573.47 719.58 TRUE FALSE FALSE 601.809815 792.980605 463.8404341 508.4959964 677.7980473 670.894984 542.7983999 702.1956029 549.8313239 715.2999062 0.84133915 1.108598782 0.648455886 0.710885032 0.947571839 0.937921253 0.758840306 0.981679987 0.76867244 1 9.482404442 -9.540037501 0.560299307 1.038372009 0.85739779 0 0.148412375 2.646924868 0.986631242 0.265510852 0.029837883 2.88E-10 9.540037501 -0.18097422 KPEDVLDDDDAGS(ph)APLK ddPTM_HeLa_CUDC101_4h_R1 1 KPEDVLDDDDAGSAPLK 17 1 A0A087WUV8;P35613-3;P35613-4;P35613-2;P35613 A0A087WUV8 BSG Basigin 1 0 KPEDVLDDDDAGS(1)APLK 109.44 0.00060339 13636000 3825.3 3431 2484.8 3145.9 2844.3 3143.8 3240 3142.9 2928 2824.2 TRUE FALSE FALSE 3376.904133 3536.705043 2619.135804 3274.2034 2634.481656 3083.837253 3364.967885 3500.675032 2807.306601 2807.401533 1.202857551 1.259778839 0.932939508 1.166275419 0.93840572 1.098466755 1.198605845 1.246944903 0.999966185 1 11.45501971 -9.539875762 1.335662945 1.000780284 1.133889126 0.18562586 0.108910844 0.635795633 2.050488576 0.075097083 0.01832267 2.88E-10 9.539875762 0.133108842 SRPTSEGS(ph)DIESTEPQK ddPTM_HeLa_CUDC101_4h_R1 2 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;D6RFF0;H0YA82 Q4G0J3 LARP7 La-related protein 7 1 0 S(0.005)RPT(0.054)S(0.036)EGS(0.904)DIES(0.001)TEPQK;S(0.002)RPT(0.019)S(0.019)EGS(0.943)DIES(0.012)T(0.004)EPQK ; 96.591 0.0024284 174558000 8379 7226.3 8585 7560.1 9065 8317.4 7820.2 8169.8 9083.7 9504.7 TRUE FALSE FALSE 7396.826322 7448.933738 9049.131068 7868.433556 8396.29301 8158.759453 8121.827734 9099.817009 8709.266041 9448.165622 0.782884913 0.788399996 0.957765923 0.83280013 0.888669118 0.863528412 0.859619534 0.963130556 0.921794387 1 13.20581854 -9.539401951 1.326608135 0.99936956 0.856437626 0.224010578 0.062022829 0.328735979 1.04345483 0.041594405 0.010086578 2.89E-10 9.539401951 -0.142931934 MAPTPIPT(ph)RSPSDSSTASTPVAEQIER ddPTM_HeLa_CUDC101_4h_R1 4 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643-3;Q16643;Q16643-2;D6R9Q9 Q16643-3 DBN1 Drebrin 1 0 MAPT(0.019)PIPT(0.469)RS(0.469)PS(0.039)DS(0.002)S(0.001)T(0.001)ASTPVAEQIER;MAPT(0.006)PIPT(0.494)RS(0.494)PS(0.005)DSSTASTPVAEQIER;MAPT(0.039)PIPT(0.448)RS(0.448)PS(0.045)DS(0.008)S(0.005)T(0.007)AST(0.001)PVAEQIER;MAPT(0.002)PIPT(0.939)RS(0.058)PS(0.001)DSSTASTPVAEQIER ;;; 144.33 4.37E-11 379450000 5083.27 4418.95 4517.5 4439.86 5431.58 4613.9 4195.22 4397.91 5135.53 4944.53 TRUE FALSE FALSE 4487.416796 4555.092612 4761.729715 4620.936682 5030.903165 4525.897545 4357.031041 4898.550297 4923.84128 4915.119716 0.912982197 0.926751102 0.968792215 0.940147331 1.023556588 0.920811253 0.886454714 0.996628888 1.001774436 1 12.26301084 -9.539397369 1.320097431 0.999813662 0.942394243 0.228523186 0.038696359 0.522943522 1.640643605 0.026539758 0.006403866 2.89E-10 9.539397369 -0.057419419 LQCS(ph)VY(ph)S(ph)ALY(ph)PAVSR ddPTM_HeLa_CUDC101_4h_R1 1 LQCSVYSALYPAVSR 15 0 H3BM58;Q9Y2B5;Q9Y2B5-2 H3BM58 VPS9D1 VPS9 domain-containing protein 1 4 0 LQCS(1)VY(1)S(0.973)ALY(0.977)PAVS(0.05)R 56.819 0.034788 10642000 3174.4 2899.6 3185.5 2786.5 3594.6 3437 3128.8 3180.6 3486.2 3843.4 TRUE FALSE FALSE 2802.301644 2988.933239 3357.717766 2900.145514 3329.433519 3371.444951 3249.478864 3542.666648 3342.49736 3820.539286 0.733483269 0.782332811 0.878859636 0.759093232 0.871456428 0.882452633 0.850528844 0.927268739 0.874875799 1 11.89956058 -9.538733303 1.320715631 0.999378111 0.823501607 0.166487082 0.069223774 0.289358404 0.909058756 0.044970466 0.010867882 2.89E-10 9.538733303 -0.175876504 LPGSGAVQAAS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 LPGSGAVQAASPER 14 0 Q86U90 Q86U90 YRDC "YrdC domain-containing protein, mitochondrial" 1 0 LPGSGAVQAAS(1)PER;LPGSGAVQAAS(1)PER ; 142.4 0.00045235 76552000 1041.75 903.42 891.25 952.91 1126.69 992.85 903.24 883.38 1374.9 1046.27 TRUE FALSE FALSE 919.6376442 931.2532994 939.4336709 991.7737886 1043.576323 973.9130405 938.0782694 983.9404085 1318.22604 1040.04674 0.884227227 0.895395624 0.903261012 0.953585787 1.003393678 0.936412762 0.9019578 0.946054029 1.267468076 1 10.02243265 -9.53859484 1.328796115 0.99961802 0.923431517 0.258556367 0.09212784 0.386090018 1.230684764 0.026040448 0.006333542 2.89E-10 9.53859484 -0.076186502 AETNSRVS(ph)GVDGYETEGIR ddPTM_HeLa_CUDC101_4h_R1 1 AETNSRVSGVDGYETEGIR 19 1 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 0 AETNS(0.001)RVS(0.998)GVDGYET(0.001)EGIR 81.639 0.028894 4694400 684.16 746.54 805.02 672.31 896.63 666.51 633.15 732.97 918.59 958.21 TRUE FALSE FALSE 603.9638019 769.5400125 848.5418163 699.7297078 830.4873912 653.7974322 657.5708076 816.408342 880.7253314 952.5105243 0.634075726 0.807907097 0.890847707 0.734616248 0.871893139 0.68639392 0.690355425 0.857112149 0.924635801 1 9.895591223 -9.538039114 1.296042947 1.000189726 0.756441304 0.428546038 0.085544636 0.293662877 0.882334171 0.06284497 0.014915409 2.90E-10 9.538039114 -0.243748422 AQSEAEK(ac)LAK ddPTM_HeLa_CUDC101_4h_R1 1 AQSEAEKLAK 10 1 P26038 P26038 MSN Moesin 0 1 AQSEAEK(1)LAK 154.24 2.05E-13 0 223.62 208.06 158.34 325.06 184.61 368 311.5 277.75 228.11 120.33 FALSE TRUE FALSE 197.4076026 214.470082 166.9003394 338.3173518 170.9916881 360.9810131 323.5146593 309.3679373 218.7072093 119.6142718 1.650368301 1.793014151 1.395321284 2.828402888 1.429525804 3.017875774 2.704649324 2.586379808 1.828437409 1 6.902245725 -4.391747686 0.159453737 0.66764496 4.675712744 0.437020817 0.500121295 8.681355444 0.252167548 1.058643118 7.425460702 4.06E-05 4.391747686 4.008067783 ITVGNDHFCVS(ph)TPER ddPTM_HeLa_CUDC101_4h_R1 2 ITVGNDHFCVSTPER 15 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 ITVGNDHFCVS(0.616)T(0.383)PER;ITVGNDHFCVS(0.507)T(0.493)PER ; 102.69 0.0030074 27502000 8518.6 5713.6 4355.9 5158.3 5378.9 5903.5 4720.3 4042.5 4807.6 2007.59 TRUE FALSE FALSE 7520.062621 5889.629244 4591.39313 5368.67777 4982.109263 5790.900573 4902.363552 4502.68186 4609.428693 1995.648765 3.768229536 2.951235381 2.300702012 2.690191713 2.49648603 2.901763413 2.456526237 2.256249666 2.309739456 1 10.96264211 -9.537800441 1.311148692 1.003737466 2.837767629 0.251442405 0.573585401 0.225434445 0.696365133 0.364314069 0.087526743 2.90E-10 9.537800441 1.834030163 SGNWES(ph)SEGWGAQPEGAGAQR ddPTM_HeLa_CUDC101_4h_R1 1 SGNWESSEGWGAQPEGAGAQR 21 0 Q9Y5X1 Q9Y5X1 SNX9 Sorting nexin-9 1 0 S(0.136)GNWES(0.446)S(0.418)EGWGAQPEGAGAQR 119.94 1.16E-05 0 345.82 277.96 273.57 274.85 306.92 252.07 199.1 364.35 426.94 252.05 TRUE FALSE FALSE 305.2835038 286.5236181 288.3600217 286.059571 284.2791231 247.2621847 206.7793537 405.8261312 409.3413525 250.5507954 1.21844955 1.143574969 1.150904435 1.141722861 1.134616726 0.986874475 0.825299131 1.619735953 1.633765927 1 7.968959307 -9.537340399 1.312210811 1.000337688 1.145052827 0 0.273976714 0.956860412 2.961972378 0.122014386 0.029360035 2.90E-10 9.537340399 0.14471514 HDRES(ph)YNNSGSS(ph)S(ph)RKK ddPTM_HeLa_CUDC101_4h_R1 1 HDRESYNNSGSSSRKK 16 3 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 3 0 HDRES(0.346)Y(0.316)NNS(0.346)GS(0.211)S(0.899)S(0.882)RKK 45.863 0.0033766 0 0 229.29 141.6 62.503 160.45 190.19 0 177.66 155.02 331.74 TRUE FALSE FALSE 0 236.3541531 149.2553243 65.0521425 148.6139232 186.5624426 0 197.8840963 148.63001 329.7667957 0 0.716731206 0.452608711 0.197267109 0.450663697 0.565740533 0 0.600072836 0.450712479 1 8.365302331 -9.536898943 1.281535603 1.002137647 0.331998883 0.076623209 0.284733376 0.291100713 0.851808382 0.170529197 0.040083276 2.90E-10 9.536898943 -0.670138763 SAPAPK(ac)K(ac)GSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 4 SAPAPKKGSKK 11 3 O60814;P57053;P58876;P62807;Q16778;Q5QNW6;Q5QNW6-2;Q8N257;Q93079;U3KQK0;Q99877;Q99880 O60814;P58876;P62807;Q16778;Q5QNW6;Q8N257;Q93079;U3KQK0;Q99880 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST2H2BF;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BL Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 2-F;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L 0 3 ;;; SAPAPK(1)K(1)GSK(1)K;SAPAPK(1)K(1)GSK(1)K;SAPAPK(1)K(1)GSK(1)K;SAPAPK(1)K(1)GSK(1)K 149.23 0.0027068 3228500000 3708 7602.38 13987.34 26295.64 26576.96 28128.09 26282 19877.11 198.335 545.2 FALSE TRUE FALSE 3273.353861 7836.600317 14743.53791 27368.08986 24616.43061 27591.59355 27295.70554 22139.83986 190.1595474 541.9571262 6.03987604 14.45981599 27.2042514 50.49862533 45.42136162 50.91102638 50.36506437 40.85164451 0.350875629 1 9.082034915 -6.651856647 1.495728433 3.191393082 48.39623136 0.966289218 3.742396267 0.042450982 0.192109615 0.62670916 0.969184773 2.23E-07 6.651856647 45.20483827 up VDS(ph)PSHGLVTSSLCIPSPAR ddPTM_HeLa_CUDC101_4h_R1 4 VDSPSHGLVTSSLCIPSPAR 20 0 Q9UER7-3;Q9UER7 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 VDS(0.949)PS(0.051)HGLVTSSLCIPSPAR;VDS(0.943)PS(0.057)HGLVTSSLCIPSPAR;VDS(0.936)PS(0.064)HGLVTSSLCIPSPAR;VDS(0.594)PS(0.406)HGLVTSSLCIPSPAR ;;; 215.51 4.61E-25 112603000 5512.33 3104.76 3202.45 2973.09 4427.66 4247.85 4254.01 3891.93 4607.05 2316.76 TRUE FALSE FALSE 4866.183034 3200.413976 3375.584134 3094.345461 4101.040343 4166.829339 4418.088591 4334.971579 4417.145449 2302.979808 2.112994224 1.389683906 1.4657463 1.343626831 1.780753929 1.80932083 1.918422634 1.882331562 1.918013103 1 11.16928605 -9.535917785 1.278620724 0.997392531 1.744480946 0 0.365366595 0.298535395 0.869168172 0.194712316 0.045733915 2.91E-10 9.535917785 0.747088415 VYSS(ph)SEFLAVQPTPTFAER ddPTM_HeLa_CUDC101_4h_R1 1 VYSSSEFLAVQPTPTFAER 19 0 O60307;V9GYV0 O60307 MAST3 Microtubule-associated serine/threonine-protein kinase 3 1 0 VYS(0.158)S(0.841)S(0.001)EFLAVQPTPTFAER 119.92 5.80E-05 5693400 912.74 701.02 680.15 639.31 810.36 695.64 592.69 651.45 745.67 549.07 TRUE FALSE FALSE 805.7500008 722.6175953 716.9209663 665.3838251 750.5813573 682.371826 615.5502518 725.6084347 714.933167 545.8041072 1.476262253 1.323950454 1.313513323 1.219089077 1.375184516 1.250213798 1.127786038 1.329430147 1.309871358 1 9.092239441 -9.534727403 1.307357575 1.000693345 1.317103961 0 0.128707035 0.258398779 0.793687277 0.071851273 0.017297243 2.92E-10 9.534727403 0.316410616 S(ph)RSAPDGGDEENQEQLQDQIAEGSSIEEEEKTDNATLLR ddPTM_HeLa_CUDC101_4h_R1 1 SRSAPDGGDEENQEQLQDQIAEGSSIEEEEKTDNATLLR 39 2 Q8IZQ1;Q8IZQ1-2;H0Y9T6 Q8IZQ1 WDFY3 WD repeat and FYVE domain-containing protein 3 1 0 S(0.523)RS(0.477)APDGGDEENQEQLQDQIAEGSSIEEEEKTDNATLLR 60.54 7.62E-05 4919200 657.52 243.37 536.2 487.33 538.06 408.61 447.23 442.51 472.64 273.09 TRUE FALSE FALSE 580.4465023 250.8679412 565.1885939 507.2054238 498.3683858 400.816445 464.4798109 492.8835497 453.1575792 271.4656485 2.138195037 0.924124075 2.081989368 1.868396339 1.835843277 1.476490478 1.711007685 1.815638746 1.669299897 1 8.08462584 -9.534328326 1.253782337 0.993990354 1.765866994 0.04161433 0.38144386 0.352847902 0.980655583 0.235988874 0.054462418 2.92E-10 9.534328326 0.77187664 LVTAYQRS(ph)Y(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 LVTAYQRSYK 10 1 Q9HCK8-2;Q9HCK8;H0YJG4;A0A2R8Y840 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 2 0 LVTAYQRS(1)Y(1)K 79.283 0.032077 29727000 3331.9 2756.6 2921 2230.1 3009.6 2809.1 2635.8 2747.9 2911.3 2594.3 TRUE FALSE FALSE 2941.339733 2841.527579 3078.918096 2321.053117 2787.587804 2755.521098 2737.463689 3060.709829 2791.294982 2578.868988 1.140554152 1.101850304 1.193902486 0.900027542 1.080934245 1.068499839 1.061497773 1.186841923 1.082371766 1 11.33252277 -9.534300515 1.317520056 1.000382201 1.093450075 0.020667635 0.081471731 0.639229855 2.000196992 0.05239776 0.012722274 2.92E-10 9.534300515 0.093067875 HRPS(ph)PPAT(ph)PPPK ddPTM_HeLa_CUDC101_4h_R1 1 HRPSPPATPPPK 12 1 A9Z1X7;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 HRPS(1)PPAT(1)PPPK 89.502 0.032526 328490000 6677.8 5906.7 6108.5 6018.9 7090.3 6415.1 5743.8 5982.1 6623.5 6925.8 TRUE FALSE FALSE 5895.038407 6088.678426 6438.743987 6264.376758 6567.262695 6292.742656 5965.34029 6663.078084 6350.476527 6884.605034 0.856263849 0.884390375 0.935237963 0.909910841 0.953905513 0.914031034 0.866475311 0.967822853 0.922416972 1 12.74915817 -9.534244477 1.311150134 0.999713625 0.904326665 0.073559656 0.041283338 0.300005096 0.928025445 0.025164794 0.006080669 2.92E-10 9.534244477 -0.09538696 EPSVPASCAVSATYERS(ph)PS(ph)PAHLPDDPK ddPTM_HeLa_CUDC101_4h_R1 2 EPSVPASCAVSATYERSPSPAHLPDDPK 28 1 Q92615;H0Y4V9;H0Y641 Q92615 LARP4B La-related protein 4B 2 0 EPS(0.001)VPAS(0.013)CAVS(0.088)AT(0.088)Y(0.17)ERS(0.821)PS(0.821)PAHLPDDPK;EPSVPASCAVS(0.013)AT(0.071)Y(0.198)ERS(0.778)PS(0.94)PAHLPDDPK ; 88.504 4.44E-07 80903000 5545.2 4461.8 4027.2 4073.8 4621.6 4501.5 4176.4 3622.7 5060.9 3549.6 TRUE FALSE FALSE 4895.200062 4599.262769 4244.922614 4239.947172 4280.673776 4415.641388 4337.485147 4035.093525 4852.28756 3528.486821 1.387336927 1.303466047 1.203043352 1.201633274 1.213175503 1.251426351 1.229276278 1.143576193 1.375175197 1 11.78483391 -9.534178342 1.311105094 1.000773639 1.257832313 0 0.131270887 0.238229184 0.736889166 0.053849538 0.013012809 2.92E-10 9.534178342 0.257058675 QGSYS(ph)PALPLQPLGGHK ddPTM_HeLa_CUDC101_4h_R1 1 QGSYSPALPLQPLGGHK 17 0 Q6ZRI6-2;Q6ZRI6;H3BMJ2 Q6ZRI6-2 C15orf39 Uncharacterized protein C15orf39 1 0 QGS(0.272)Y(0.028)S(0.7)PALPLQPLGGHK 67.785 0.018674 18596000 2455.6 2866.8 2569.7 2486.6 2967.8 2857.6 2397.6 2252.2 3044.1 3445.8 TRUE FALSE FALSE 2167.75829 2955.12271 2708.625755 2588.014296 2748.871307 2803.096041 2490.076235 2508.581344 2918.62091 3425.304228 0.632865914 0.862732917 0.790769396 0.755557499 0.802518878 0.818349511 0.726964984 0.732367456 0.852076404 1 11.74201642 -9.533667278 1.281993506 1.000550189 0.754192074 0.375297053 0.073648244 0.229137931 0.671972735 0.049264056 0.011644986 2.93E-10 9.533667278 -0.246358115 ILRITGY(ph)Y(ph)GYYPGY(ph)SSQKS(ph)T(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 ILRITGYYGYYPGYSSQKSTSR 22 2 G3V4Z9 G3V4Z9 SLC35F4 5 0 ILRIT(0.241)GY(0.538)Y(0.538)GY(0.296)Y(0.294)PGY(0.372)S(0.374)S(0.385)QKS(0.843)T(0.845)S(0.273)R 40.756 0.0030686 0 660.01 461.09 639.93 467.47 478.01 440.01 509.66 473.66 452.4 410.04 TRUE FALSE FALSE 582.6446283 475.2956364 674.5265515 486.5354472 442.7481546 431.6175424 529.3177569 527.5795398 433.7518805 407.6010638 1.429448252 1.166080461 1.654869458 1.19365598 1.086229144 1.05892153 1.298617211 1.294352706 1.064157871 1 8.671014007 -9.533531098 1.301627106 1.00042719 1.286450116 0.247908968 0.165594355 0.476049833 1.447707662 0.119410247 0.028673625 2.93E-10 9.533531098 0.286022926 YSPTSPT(ph)YSPTSPK ddPTM_HeLa_CUDC101_4h_R1 1 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPTS(0.002)PT(0.597)Y(0.001)S(0.392)PT(0.007)S(0.001)PK 135.86 0.0031565 137900000 6866.9 5908.3 5255.7 5721 6470 6183.2 5624 5426.1 6601.7 5779 TRUE FALSE FALSE 6061.972392 6090.32772 5539.83904 5954.327108 5992.72099 6065.265762 5840.919564 6043.785291 6329.575132 5744.626251 1.055242261 1.060178235 0.964351517 1.03650383 1.043187272 1.055815556 1.016762329 1.052076328 1.101825403 1 12.48799732 -9.533302433 1.307822202 1.000095243 1.036826434 0 0.041438109 0.577034524 1.774897074 0.018613579 0.004492897 2.93E-10 9.533302433 0.036731191 SFSLASSSNS(ph)PISQR ddPTM_HeLa_CUDC101_4h_R1 2 SFSLASSSNSPISQR 15 0 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 0 SFSLAS(0.001)SSNS(0.998)PISQR;SFSLAS(0.001)S(0.003)SNS(0.997)PISQR ; 303.44 3.41E-123 498070000 7885.2 6002.6 5777.1 6392.6 6938.8 6549.1 6367.1 5179.6 5777.4 5481 TRUE FALSE FALSE 6960.908809 6187.532991 6089.427501 6653.317859 6426.938548 6424.186829 6612.68118 5769.224727 5539.253127 5448.398768 1.27760634 1.135660816 1.117654518 1.221151047 1.179601351 1.1790963 1.213692584 1.058884449 1.016675424 1 12.41161658 -9.532956899 1.287357863 0.999807999 1.185771475 0.552177829 0.05832189 0.267223824 0.791756158 0.043410609 0.010317153 2.93E-10 9.532956899 0.185963476 TSSESIISVPASSTSGS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 TSSESIISVPASSTSGSPSR 20 0 D6RAL0;F5GYR0;Q6H8Q1-4;Q6H8Q1-6;Q6H8Q1-8;Q6H8Q1-3;Q6H8Q1-7;Q6H8Q1-2;Q6H8Q1-5;Q6H8Q1;Q6H8Q1-9 D6RAL0 ABLIM2 Actin-binding LIM protein 2 1 0 TSSESIISVPAS(0.003)S(0.042)T(0.008)S(0.151)GS(0.79)PS(0.005)R 173.49 5.68E-08 7323900 1024.9 924.18 941.25 1020.6 1151 1227.8 1062.2 709.02 1310 1215.9 TRUE FALSE FALSE 904.7627756 952.6528904 992.1368221 1062.224479 1066.093023 1204.381761 1103.16941 789.7319708 1256.001246 1208.667773 0.748562009 0.78818424 0.820851556 0.878839085 0.882039753 0.996453937 0.912715168 0.653390442 1.03916169 1 10.23920203 -9.532699828 1.31482003 0.999319386 0.832560248 0.392608522 0.090314037 0.442393656 1.378427561 0.064875212 0.015759604 2.93E-10 9.532699828 -0.166759138 AQTK(ac)APPKPAR ddPTM_HeLa_CUDC101_4h_R1 1 AQTKAPPKPAR 11 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2;S4R3C2;S4R349 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 AQTK(1)APPKPAR 92.866 0.026682 1242900 951.46 875.17 1273.4 1243.9 1273.1 1165.1 973.26 1485.1 925.57 536.49 FALSE TRUE FALSE 839.9313011 902.1329504 1342.243856 1294.631619 1179.185949 1142.877659 1010.798964 1654.157781 887.4176128 533.2989336 1.574972774 1.69160839 2.516869566 2.427590863 2.211116271 2.143033835 1.895370308 3.1017459 1.664015352 1 9.058800633 -7.436792395 0.625796749 1.085500306 2.397832195 0.553413316 0.373474961 0.255421587 0.222922122 0.105623201 0.110042471 3.66E-08 7.436792395 1.312331889 LPNLS(ph)SPSAEGPPGPPSGPAPR ddPTM_HeLa_CUDC101_4h_R1 1 LPNLSSPSAEGPPGPPSGPAPR 22 0 O60784-3;O60784-4;O60784;O60784-2 O60784-3 TOM1 Target of Myb protein 1 1 0 LPNLS(0.733)S(0.266)PSAEGPPGPPSGPAPR 142.43 5.18E-07 8986000 674.16 827.81 706.23 650.37 853.29 793.01 462.62 757.92 742.55 937.19 TRUE FALSE FALSE 595.1359868 853.3138449 744.41093 676.8948997 790.3444967 777.8846555 480.4634084 844.1985492 711.9417747 931.6155522 0.638821438 0.915950622 0.799053782 0.726581795 0.848359063 0.834984617 0.515731416 0.906166226 0.764201256 1 9.863590914 -9.532183884 1.266373943 1.001171623 0.757177717 0 0.136837133 0.388301855 1.106461648 0.082277388 0.019252089 2.94E-10 9.532183884 -0.243993907 (ac)AS(ph)PPESDGFSDVRK ddPTM_HeLa_CUDC101_4h_R1 1 ASPPESDGFSDVRK 14 1 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 AS(0.716)PPES(0.284)DGFSDVRK 71.221 0.0069619 23515000 2276.5 1798.5 2152 2045.4 2190.7 2175.3 1826.6 2047.9 2504.5 2181 TRUE FALSE FALSE 2009.652121 1853.909653 2268.343629 2128.820253 2029.096425 2133.809777 1897.052574 2281.024658 2401.26345 2168.027315 0.926949632 0.855113605 1.04627078 0.98191579 0.935918294 0.984217202 0.875013225 1.052119889 1.107579888 1 11.08216722 -9.531670109 1.353936667 0.999462176 0.951641094 0.144462546 0.070165899 0.89346447 2.984344212 0.037890122 0.009495002 2.94E-10 9.531670109 -0.047821082 KESVS(ph)PEDSEK ddPTM_HeLa_CUDC101_4h_R1 1 KESVSPEDSEK 11 1 A0A1W2PP02;P35251-2;P35251 A0A1W2PP02;P35251-2 RFC1 Replication factor C subunit 1 1 0 KES(0.006)VS(0.882)PEDS(0.112)EK 169.17 2.00E-06 11011000 4333.5 4182.2 5485.5 4735.4 4097.1 4959 4135.2 3080.4 3423.6 5542.2 TRUE FALSE FALSE 3825.533699 4311.048625 5782.062723 4928.53008 3794.865096 4864.415337 4294.696049 3431.060285 3282.477759 5509.234748 0.694385677 0.782513148 1.049521937 0.894594314 0.688818914 0.882956628 0.779544936 0.622783461 0.59581374 1 12.42763622 -9.531045807 1.285697585 1.000177656 0.795104522 0 0.17009982 0.478219283 1.413659091 0.085543 0.020366658 2.94E-10 9.531045807 -0.205073134 SSSTSSSTVTSSAGSEQQNQS(ph)SSGSESTDKGSSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSTSSSTVTSSAGSEQQNQSSSGSESTDKGSSR 34 1 Q8N488 Q8N488 RYBP RING1 and YY1-binding protein 1 0 SSSTSSSTVT(0.002)S(0.001)S(0.001)AGS(0.002)EQQNQS(0.327)S(0.327)S(0.327)GS(0.007)ES(0.002)T(0.002)DKGSSR 79.016 5.02E-07 7555600 245.94 270.27 322.03 181.47 267.42 282.96 413.05 0 318.71 325.23 TRUE FALSE FALSE 217.111286 278.5966984 339.4399159 188.871131 247.6929594 277.5630094 428.9814769 0 305.5726389 323.2955175 0.671556747 0.861740059 1.049936969 0.584205845 0.766150305 0.858542709 1.326902025 0 0.945180562 1 8.336709694 -9.530835593 1.265856173 1.001004332 0.778949598 0.060049666 0.323329734 1.093165523 3.113680837 0.210619439 0.049370445 2.95E-10 9.530835593 -0.222054735 S(ph)QNSSISSTTGK ddPTM_HeLa_CUDC101_4h_R1 2 SQNSSISSTTGK 12 0 A0A3B3IU55;Q8WXE9;Q8WXE9-3 A0A3B3IU55 STON2 Stonin-2 1 0 S(1)QNSSISSTTGK;S(0.995)QNS(0.002)S(0.002)ISSTTGK ; 110.44 0.00065258 3222500 1388.14 1488.76 1412.38 1797.15 1579 1246.19 1190.82 1339.79 1662.04 1832.47 TRUE FALSE FALSE 1225.424333 1534.626931 1488.737535 1870.445545 1462.520316 1222.421002 1236.750326 1492.306278 1593.530008 1821.570387 0.672729609 0.842474681 0.817282464 1.026831331 0.802889818 0.671080849 0.678947317 0.819241622 0.874811108 1 10.83096703 -9.529317521 1.277510549 1.000424481 0.779980624 0.19317815 0.107317815 0.410172953 1.194988971 0.078629427 0.018650946 2.96E-10 9.529317521 -0.220443857 GPDEAMEDGEEGS(ph)DDEAEWVVTK ddPTM_HeLa_CUDC101_4h_R1 6 GPDEAMEDGEEGSDDEAEWVVTK 23 0 Q9NZN4;Q9NZN4-2 Q9NZN4 EHD2 EH domain-containing protein 2 1 0 GPDEAMEDGEEGS(1)DDEAEWVVTK;GPDEAMEDGEEGS(1)DDEAEWVVTK;GPDEAMEDGEEGS(1)DDEAEWVVTK;GPDEAMEDGEEGS(1)DDEAEWVVTK;GPDEAMEDGEEGS(1)DDEAEWVVTK;GPDEAMEDGEEGS(1)DDEAEWVVTK ;;;;; 110.27 5.57E-06 168334000 40681.2 31604.7 29296.7 28392.1 29155.2 30709.7 26798.1 27343.3 31117.4 21283.4 TRUE FALSE FALSE 35912.6114 32578.40335 30880.56822 29550.05256 27004.47898 30123.96364 27831.71169 30455.95075 29834.7276 21156.80539 1.697449626 1.539854564 1.459604494 1.396716187 1.276396813 1.423842734 1.31549689 1.439534475 1.410171671 1 14.36883418 -9.52913847 1.30424174 1.001438603 1.466587562 0.069410719 0.165992012 0.238304114 0.729439231 0.097032787 0.023513282 2.96E-10 9.52913847 0.465148959 AQVARPGGDTIFGK(ac)IIR ddPTM_HeLa_CUDC101_4h_R1 1 AQVARPGGDTIFGKIIR 17 2 D6RC06;D6REP8;D6RE99;D6RD60;P49773 D6RC06 HINT1 Histidine triad nucleotide-binding protein 1 0 1 AQVARPGGDTIFGK(1)IIR 111.11 0.013281 2033100 687.61 664.65 537.39 355.69 607.28 596.44 389.69 561.98 803.71 573.95 FALSE TRUE FALSE 607.0093981 685.1270787 566.4429289 370.1965756 562.4821643 585.0639007 404.7204738 625.9535316 770.5807336 570.5361199 1.063928079 1.20084786 0.992825711 0.648857386 0.985883531 1.025463385 0.709368714 1.097132171 1.350625678 1 9.156174414 -6.511210151 24.96858044 1.046355302 0.888125714 0.271998684 0.167395147 595.6059777 1274484.472 0.020060523 0.029593371 3.08E-07 6.511210151 -0.158229588 SSSSS(ph)S(ph)SSSGSEASSEHKR ddPTM_HeLa_CUDC101_4h_R1 1 SSSSSSSSSGSEASSEHKR 19 1 A0A1B0GV45 A0A1B0GV45 2 0 S(0.013)S(0.013)S(0.059)S(0.305)S(0.553)S(0.445)S(0.445)S(0.04)S(0.117)GS(0.007)EAS(0.001)SEHKR 52.172 0.031654 6113500 1578.1 1729.3 1538.1 1176.6 2053.1 1521.7 1649.8 1482.9 1983.2 1969.6 TRUE FALSE FALSE 1393.11751 1782.577683 1621.254338 1224.586834 1901.646903 1492.676108 1713.433339 1651.707342 1901.451657 1957.884732 0.711542149 0.910460996 0.828064243 0.625464213 0.971276231 0.762392231 0.875145156 0.843618276 0.971176508 1 10.93508011 -9.529032327 1.271695563 1.000570451 0.805834789 0.336401054 0.094285695 0.385938082 1.11230773 0.065246508 0.015411566 2.96E-10 9.529032327 -0.194735662 SSQPS(ph)PTAVPASDS(ph)PPTKQEVK ddPTM_HeLa_CUDC101_4h_R1 3 SSQPSPTAVPASDSPPTKQEVK 22 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 S(0.011)S(0.013)QPS(0.91)PT(0.066)AVPAS(0.123)DS(0.801)PPT(0.077)KQEVK;S(0.005)S(0.006)QPS(0.752)PT(0.236)AVPAS(0.07)DS(0.817)PPT(0.115)KQEVK;S(0.004)S(0.005)QPS(0.753)PT(0.239)AVPAS(0.004)DS(0.968)PPT(0.028)KQEVK ;; 105.58 3.45E-05 225390000 19267.3 19236.2 18441.2 18315.4 19788.3 19185.9 17777.4 18913.4 20042.9 22495.6 TRUE FALSE FALSE 17008.8163 19828.84452 19438.18705 19062.38118 18328.55653 18819.96092 18463.08027 21066.42501 19216.72318 22361.79517 0.760619448 0.886728653 0.869258792 0.85245308 0.819637082 0.841612258 0.825652866 0.942072175 0.85935512 1 14.44874839 -9.528626794 1.279740287 1.00021048 0.839064952 0.036851167 0.061981931 0.24798881 0.725708763 0.034758012 0.00826855 2.96E-10 9.528626794 -0.161145528 WDEQTSNTKGDDDEES(ph)DEEAVKK ddPTM_HeLa_CUDC101_4h_R1 2 WDEQTSNTKGDDDEESDEEAVKK 23 2 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 WDEQTSNTKGDDDEES(1)DEEAVKK;WDEQTSNTKGDDDEES(1)DEEAVKK ; 83.755 0.00035344 156725000 3448.6 3207.6 3340.1 3414.1 3451.5 3136.4 3073.3 2916.4 3154.4 3688 TRUE FALSE FALSE 3044.360336 3306.422354 3520.675909 3553.341755 3196.889721 3076.578396 3191.83821 3248.391188 3024.374297 3666.063612 0.83041667 0.901899886 0.960342286 0.969252618 0.872022436 0.839204859 0.870644525 0.886070601 0.824965035 1 11.8400161 -9.528625119 1.278261268 1.000183653 0.885945962 0 0.068691949 0.353331542 1.031128823 0.035093806 0.008338601 2.96E-10 9.528625119 -0.114237691 AQYDELAR ddPTM_HeLa_CUDC101_4h_R1 2 AQYDELAR 8 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 180.87 4.87E-08 262350000 10759.4 9596.8 9355.5 9536.7 10178 9453.8 8929.9 9490.3 9429.5 9286.2 FALSE FALSE TRUE 9498.199442 9892.466033 9861.286629 9925.647847 9427.189217 9273.484516 9274.329234 10570.63739 9040.812019 9230.965269 1.028949754 1.071661061 1.068283364 1.075255681 1.021257143 1.004606154 1.004697663 1.145128064 0.979400502 1 13.1722658 -7.929281543 1.262336139 1.007214892 1.051204701 0.263198262 0.040572807 0.479375663 1.595793013 0.009460104 0.008230607 1.18E-08 7.929281543 0.043989809 NCPPS(ph)PLPLISK ddPTM_HeLa_CUDC101_4h_R1 1 NCPPSPLPLISK 12 0 A0A0A0MRP0;Q8IWC1-2;Q8IWC1-3;Q8IWC1-4;Q8IWC1 A0A0A0MRP0 MAP7D3 MAP7 domain-containing protein 3 1 0 NCPPS(1)PLPLISK 132.24 0.0014927 28364000 2500.3 1925.5 1934.4 2123 1694 1656.2 1784.7 1894.4 2254.7 1492 TRUE FALSE FALSE 2207.218624 1984.822373 2038.979515 2209.585116 1569.036995 1624.610744 1853.536477 2110.050839 2161.760312 1483.125518 1.488221056 1.338269991 1.37478554 1.489816668 1.057925965 1.095396664 1.249750244 1.422705505 1.457570709 1 10.53442498 -9.52812169 1.301149342 1.000919398 1.327019016 0 0.197741279 0.378227817 1.15169269 0.107825617 0.026108374 2.96E-10 9.52812169 0.326099618 ARDEWDR ddPTM_HeLa_CUDC101_4h_R1 2 ARDEWDR 7 1 Q2TAM9 Q2TAM9 TUSC1 Tumor suppressor candidate gene 1 protein 0 0 ; ; 87.754 0.0027336 0 2725.9 1548.72 2362.13 2432.95 2363.48 1973.39 2288.91 1577.68 2801.6 3002.6 FALSE FALSE TRUE 2406.374134 1596.434228 2489.833893 2532.176217 2189.130789 1935.750874 2377.194025 1757.276714 2686.116862 2984.740402 0.806225604 0.534865353 0.834187754 0.848374021 0.733440934 0.648549158 0.796449173 0.588753619 0.899949912 1 11.54338974 -8.530395417 0.581054305 1.007827882 0.716056848 0.422284939 0.103738037 0.488370619 0.335271974 0.067603436 0.026491421 2.95E-09 8.530395417 -0.291771033 AREEEEQKEGGDGAAGDPK ddPTM_HeLa_CUDC101_4h_R1 1 AREEEEQKEGGDGAAGDPK 19 2 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 0 53.536 0.025481 8815500 4586.6 3733.9 3485.1 3559.3 4404.8 3550.4 3675.3 3429.1 4115.8 4609.3 FALSE FALSE TRUE 4048.965701 3848.937033 3673.515048 3704.463639 4079.86668 3482.682035 3817.057552 3819.454883 3946.144982 4581.883679 0.883690199 0.840033773 0.801747776 0.808502332 0.890434364 0.760098309 0.833076049 0.833599269 0.86124949 1 12.16172512 -8.298803643 0.523447281 1.003450045 0.815543991 0.280671642 0.052398132 0.258221651 0.155562392 0.021417742 0.009975815 5.03E-09 8.298803643 -0.187906055 AREEEEQKEGGDGAAGDPKK ddPTM_HeLa_CUDC101_4h_R1 1 AREEEEQKEGGDGAAGDPKK 20 3 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 0 47.222 0.030288 12460000 3705.6 3494.8 3846.7 3931.4 4351.8 3949.8 4346.5 4336.2 5000.1 3981.5 FALSE FALSE TRUE 3271.235185 3602.470646 4054.664238 4091.739485 4030.776384 3874.464146 4514.145961 4829.81548 4793.993762 3957.817861 0.826524944 0.91021638 1.02446964 1.033837238 1.018434027 0.978939477 1.140564351 1.220322827 1.211271951 1 11.95048951 -3.533981426 0.493230459 0.922442715 1.728513054 0.16714368 0.108107143 4.087348543 0.399662842 0.016442127 2.241402496 0.000292428 3.533981426 0.806070339 LTQAEISEQPTMATVVPQVPT(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 LTQAEISEQPTMATVVPQVPTSPK 24 0 C9K0J5;Q70E73 C9K0J5 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 LTQAEISEQPTMATVVPQVPT(0.947)S(0.053)PK 118.67 2.94E-08 19934000 1944.4 1923.2 1901.8 1851.2 2122.5 1959.9 1757.4 1892.3 1850.9 2312 TRUE FALSE FALSE 1716.48038 1982.451512 2004.617061 1926.699938 1965.927404 1922.518173 1825.183507 2107.711783 1774.605119 2298.248121 0.746864694 0.862592465 0.872237006 0.838334173 0.855402594 0.836514628 0.79416295 0.917094966 0.772155583 1 11.16631885 -9.527777667 1.282500579 1.000097471 0.829795315 0 0.082271111 0.232309247 0.683567921 0.03441872 0.008217109 2.97E-10 9.527777667 -0.170302155 AREETDK(ac)EEPASK ddPTM_HeLa_CUDC101_4h_R1 2 AREETDKEEPASK 13 2 P05455 P05455 SSB Lupus La protein 0 1 ; AREETDK(1)EEPASK;AREETDK(1)EEPASK 175.6 7.08E-07 941570 267.569 360.098 406.13 193.7 195.31 392.79 200.9 312.18 342.931 460.6 FALSE TRUE FALSE 236.2049674 371.1921926 428.0866163 201.5999232 180.9023704 385.2981852 208.6487803 347.7173093 328.795239 457.8603307 0.515888693 0.810710533 0.934972059 0.440308779 0.39510383 0.841519038 0.455703992 0.759439694 0.718112527 1 8.838763764 -9.444002077 1.008748114 1.014762359 0.632578662 0.092702636 0.198365133 0.516442433 0.879179856 0.150553918 0.032103892 3.60E-10 9.444002077 -0.382183697 AREETDKEEPASK(ac)QQK ddPTM_HeLa_CUDC101_4h_R1 2 AREETDKEEPASKQQK 16 3 P05455 P05455 SSB Lupus La protein 0 1 ; AREETDKEEPASK(1)QQK;AREETDKEEPASK(1)QQK 197.7 4.38E-17 17099580 10385.19 10613.03 10469.1 11257.59 11249.98 10543.69 10352.49 10706.9 10447.35 10767.77 FALSE TRUE FALSE 9167.853771 10940.00487 11035.09121 11716.72318 10420.09139 10342.58668 10751.78901 11925.73022 10016.70581 10703.72283 0.85651076 1.022074754 1.030958237 1.094640002 0.973501609 0.966260697 1.004490604 1.114166577 0.935815134 1 13.38582504 -7.140588694 9.418981469 0.932271506 1.026800805 0.408086508 0.054405021 0.331105433 24.33005241 0.011299698 0.013846627 7.23E-08 7.140588694 0.094529299 ARFEELCSDLFR ddPTM_HeLa_CUDC101_4h_R1 2 ARFEELCSDLFR 12 1 P17066;P48741;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 P17066;A0A0G2JIW1 HSPA6;HSPA7;HSPA1B;HSPA1A Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 141.58 0.0014918 136332000 5938.2 4239.6 3523 4230.2 5111.6 4243.2 4461.6 4031 3501.8 1217.93 FALSE FALSE TRUE 5242.133198 4370.217051 3713.464036 4402.72584 4734.527452 4162.26803 4633.685407 4489.872746 3357.454322 1210.685698 4.32988777 3.609704036 3.06724036 3.636555588 3.910616487 3.437942677 3.827323155 3.708537032 2.773184095 1 10.24160867 -9.352587361 0.951999469 0.913512059 3.714900407 0.512505034 0.613445137 0.14490634 0.22334727 0.291111536 0.067228681 4.44E-10 9.352587361 2.801388347 ARFEELNADLFR ddPTM_HeLa_CUDC101_4h_R1 1 ARFEELNADLFR 12 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2;P54652 P11142;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 96.756 0.017815 127350000 2981 2280.7 1504.3 2137.3 2113.5 2175.8 2315.6 2112.6 2195.1 1016.6 FALSE FALSE TRUE 2631.571699 2350.965664 1585.627008 2224.468332 1957.591316 2134.30024 2404.913468 2353.089845 2104.617049 1010.553218 2.604090168 2.326414504 1.569068289 2.201238186 1.937148169 2.11201172 2.379798931 2.328516502 2.082638511 1 9.980929584 -9.423551302 1.110271673 0.988884547 2.2016449 0.09226059 0.420066752 0.224949987 0.48874631 0.214122903 0.051955989 3.77E-10 9.423551302 1.212760352 VFDVNRPCS(ph)PDSTTGSFADSFSSQK ddPTM_HeLa_CUDC101_4h_R1 1 VFDVNRPCSPDSTTGSFADSFSSQK 25 1 Q9NRE2;Q9NRE2-2 Q9NRE2 TSHZ2 Teashirt homolog 2 1 0 VFDVNRPCS(0.831)PDS(0.051)T(0.051)T(0.051)GS(0.009)FADS(0.003)FS(0.001)S(0.001)QK 45.305 0.033032 31353000 1411.2 737.84 892.72 927.96 1156.4 888.41 1205.9 896.66 1152.1 597.08 TRUE FALSE FALSE 1245.781275 760.5719758 940.9831435 965.8062198 1071.094676 871.4650594 1252.411967 998.73215 1104.60995 593.5285416 2.098940806 1.281441283 1.585405044 1.627227929 1.80462202 1.468278269 2.110112453 1.682702819 1.86108986 1 9.213173598 -9.527387814 1.256817569 0.996000238 1.742819265 0 0.357666393 0.287834406 0.807035328 0.185713431 0.043456151 2.97E-10 9.527387814 0.746819028 PRPS(ph)PSSTREPLLSSSENGNGGR ddPTM_HeLa_CUDC101_4h_R1 1 PRPSPSSTREPLLSSSENGNGGR 23 2 M0QZR4;Q92888-2;Q92888;Q92888-3;M0QYC1;Q92888-4 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 1 0 PRPS(0.286)PS(0.237)S(0.237)T(0.237)REPLLS(0.001)S(0.001)S(0.001)ENGNGGR 50.255 0.035977 7925100 416.94 432.64 224.51 251.96 251.91 350.06 434.74 230.51 431.58 257.34 TRUE FALSE FALSE 368.0669252 445.9691256 236.6476897 262.2360179 233.3271012 343.3831887 451.5080674 256.7503266 413.7900897 255.8093302 1.438833075 1.743365362 0.925094051 1.02512296 0.912113334 1.342340361 1.76501798 1.003678507 1.617572312 1 7.998925075 -9.526619834 1.336768757 1.00277577 1.292458343 0 0.35324491 0.798360712 2.592714348 0.203711222 0.050806378 2.97E-10 9.526619834 0.289682573 APS(ph)PHVVQENLHSEVVEVCTSSTLK ddPTM_HeLa_CUDC101_4h_R1 2 APSPHVVQENLHSEVVEVCTSSTLK 25 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 APS(1)PHVVQENLHSEVVEVCTSSTLK;APS(0.997)PHVVQENLHS(0.003)EVVEVCTSSTLK ; 88.633 1.57E-05 25083000 3828.2 2906.59 2666.57 2695.45 2663.8 2991.32 2762.99 2425.82 3077.2 1995.12 TRUE FALSE FALSE 3379.464199 2996.138593 2810.73284 2805.382102 2467.296781 2934.265555 2869.55945 2701.965543 2950.356514 1983.252938 1.704000602 1.510719352 1.41723367 1.41453571 1.244065613 1.479521598 1.446895348 1.362390794 1.487635015 1 10.95365297 -9.526297518 1.294743468 1.000992544 1.472779387 0 0.185120759 0.231334077 0.696694166 0.095164297 0.022994723 2.98E-10 9.526297518 0.471786842 GFGS(ph)VEELCTNSSLGMEK ddPTM_HeLa_CUDC101_4h_R1 2 GFGSVEELCTNSSLGMEK 18 0 Q2NKX8;B5MDQ0 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 GFGS(1)VEELCTNSSLGMEK;GFGS(1)VEELCTNSSLGMEK ; 178.22 7.39E-08 17352200 3581.7 3140 2680.06 2615.02 3379.6 3186.6 2561.26 2615.3 3418 2659.9 TRUE FALSE FALSE 3161.858556 3236.739678 2824.95215 2721.671819 3130.293641 3125.820914 2660.048656 2913.015181 3277.108593 2644.078797 1.195826145 1.224146452 1.068406945 1.029345957 1.183888183 1.182196581 1.006039858 1.101712696 1.239414119 1 11.36854946 -9.526153231 1.315734241 1.000778495 1.131023587 0 0.101591925 0.445787263 1.394811627 0.05088047 0.012498712 2.98E-10 9.526153231 0.130245093 ARPEDVISEGR ddPTM_HeLa_CUDC101_4h_R1 1 ARPEDVISEGR 11 1 P25325-2;P25325 P25325-2 MPST 3-mercaptopyruvate sulfurtransferase 0 0 101.71 0.015123 4516800 1062.8 1132.3 1085.2 1046.3 1133.3 867.31 775.62 630.67 1009.9 1023.6 FALSE FALSE TRUE 938.2201951 1167.184821 1143.869195 1088.972636 1049.698717 850.7675068 805.5359232 702.4629235 968.2714945 1017.511582 0.922073234 1.147097332 1.124182973 1.070231196 1.031633188 0.836125625 0.791672486 0.690373393 0.951607345 1 9.990829501 -4.991376802 2.269994297 1.001033466 0.73082884 0.714372611 0.075317833 0.165545177 1.661355433 0.013027663 0.049743816 1.02E-05 4.991376802 -0.270204626 ARPFPDGLAEDIDKGEVSAR ddPTM_HeLa_CUDC101_4h_R1 3 ARPFPDGLAEDIDKGEVSAR 20 2 P13639 P13639 EEF2 Elongation factor 2 0 0 ;; ;; 133.9 9.02E-06 60384000 6583.38 9783.7 5074.26 6420.6 6185.5 5910.6 5224.48 5786.4 5600.52 7386.4 FALSE FALSE TRUE 5811.686176 10085.1242 5348.589844 6682.45982 5729.207988 5797.865153 5425.989944 6445.100387 5369.664195 7342.465364 0.791517003 1.373533779 0.728446044 0.91011118 0.780283965 0.789634662 0.738987476 0.877784241 0.731316244 1 12.84204884 RRYEDDGIS(ph)DDEIEGK ddPTM_HeLa_CUDC101_4h_R1 2 RRYEDDGISDDEIEGK 16 2 I3VM54;Q9Y2K7-3;Q9Y2K7 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 RRY(0.045)EDDGIS(0.955)DDEIEGK;RRY(0.003)EDDGIS(0.997)DDEIEGK ; 95.307 0.0050456 49437000 5580 3941.1 4661.1 4716.8 5266.9 5018.1 4161.3 3926.7 4613.2 4226.6 TRUE FALSE FALSE 4925.920859 4062.52062 4913.093165 4909.171492 4878.37128 4922.388103 4321.802735 4373.699656 4423.041943 4201.459995 1.172430742 0.966930692 1.16937759 1.168444183 1.161113348 1.171589902 1.028643076 1.040995192 1.052739274 1 12.03667503 -9.525940539 1.223319154 0.998628523 1.117461208 0.159277942 0.071999019 0.52632645 1.383508355 0.053488827 0.012201152 2.98E-10 9.525940539 0.118832685 KES(ph)VSPEDSEK ddPTM_HeLa_CUDC101_4h_R1 1 KESVSPEDSEK 11 1 A0A1W2PP02;P35251-2;P35251 A0A1W2PP02;P35251-2 RFC1 Replication factor C subunit 1 1 0 KES(0.801)VS(0.197)PEDS(0.002)EK 103.3 0.0056632 39057000 5206.1 5826.5 6334 5992.5 5184 5660.6 5971.9 4513.9 4317.5 7614.7 TRUE FALSE FALSE 4595.84885 6006.007559 6676.435199 6236.900052 4801.586648 5552.633486 6202.238183 5027.74413 4139.530823 7569.407426 0.607160983 0.79345809 0.88202878 0.823961468 0.634341155 0.733562507 0.819382263 0.664218987 0.546876471 1 12.88596465 -9.525852377 1.271925377 1.000546338 0.734946058 0 0.162961414 0.290571054 0.838916798 0.066887291 0.015883527 2.98E-10 9.525852377 -0.26560028 ARQEELYSELQAR ddPTM_HeLa_CUDC101_4h_R1 2 ARQEELYSELQAR 13 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 144.51 0.00073217 36965000 2804.83 2707.17 2852.82 2705.16 3429.2 2965.8 2632.79 3344.7 3277.9 2609.79 FALSE FALSE TRUE 2476.052079 2790.574699 3007.052079 2815.488117 3176.234748 2909.232306 2734.337592 3725.447128 3142.783575 2594.266853 0.9544323 1.075669874 1.159114405 1.085273134 1.224328463 1.121408271 1.053992418 1.436030809 1.211434194 1 11.34111117 -6.944750725 2.155082858 0.978174378 1.172594203 0.095638729 0.123448706 0.197648423 1.849039781 0.015833592 0.021112107 1.14E-07 6.944750725 0.194419825 HTGPNS(ph)PDTANDGFVR ddPTM_HeLa_CUDC101_4h_R1 8 HTGPNSPDTANDGFVR 16 0 P31943;G8JLB6;E9PCY7;D6RDU3;D6RBM0;D6RIH9;D6RJ04;D6RIU0;D6RIT2;D6RFM3;D6R9T0;D6RAM1;E5RGH4;E5RGV0;H0YAQ2;P55795;E7EQJ0 P31943;P55795;E7EQJ0 HNRNPH1;HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2" 1 0 HTGPNS(0.84)PDT(0.16)ANDGFVR;HTGPNS(1)PDTANDGFVR;HT(0.001)GPNS(0.95)PDT(0.049)ANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(0.999)PDT(0.001)ANDGFVR;HTGPNS(1)PDTANDGFVR;HT(0.004)GPNS(0.988)PDT(0.008)ANDGFVR;HTGPNS(1)PDTANDGFVR ;;;;;;; 194.05 3.81E-16 4318358900 15861.19 15381.43 15521.36 14545.76 16099.51 15321.12 13546.84 13837.32 15775.47 17162.43 TRUE FALSE FALSE 14001.96535 15855.31363 16360.49167 15138.99896 14911.88122 15028.89516 14069.34616 15412.50458 15125.19845 17060.3471 0.820731564 0.929366415 0.958977656 0.887379306 0.874066696 0.880925521 0.82468112 0.903410961 0.886570382 1 14.05835938 -9.525842205 1.258675888 1.000559617 0.878728171 0 0.052570715 0.304399601 0.857073584 0.03202891 0.007524851 2.98E-10 9.525842205 -0.121831446 SEPSPDAPES(ph)PSSCSPSK ddPTM_HeLa_CUDC101_4h_R1 1 SEPSPDAPESPSSCSPSK 18 0 Q5SYE7-2;Q5SYE7 Q5SYE7-2 NHSL1 NHS-like protein 1 1 0 SEPSPDAPES(0.515)PS(0.297)S(0.059)CS(0.128)PS(0.001)K 277 1.07E-123 0 1462.9 1159 1199.8 1161.3 1144.7 1049.1 1039.5 1159.2 1212.8 971.15 TRUE FALSE FALSE 1291.42108 1194.707416 1264.664817 1208.662834 1060.257762 1029.090165 1079.593863 1291.158642 1162.807871 965.3735566 1.337742339 1.237559707 1.310026371 1.252015684 1.098287553 1.066002024 1.118317211 1.337470489 1.204515975 1 9.914943499 -9.525710458 1.299077727 1.000691714 1.226726505 0.03945899 0.11128963 0.36685265 1.113893054 0.072356429 0.017559434 2.98E-10 9.525710458 0.226034792 NASTFEDVTQVS(ph)SAYQK ddPTM_HeLa_CUDC101_4h_R1 1 NASTFEDVTQVSSAYQK 17 0 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 1 0 NASTFEDVT(0.007)QVS(0.495)S(0.495)AY(0.002)QK 85.473 0.0027091 0 767.98 634.97 855.32 770.72 1061.1 837.87 644.03 578.59 991.49 947.16 TRUE FALSE FALSE 677.9585486 654.5326731 901.5611864 802.1532929 982.824767 821.8890257 668.8704528 644.4543469 950.6203625 941.5262502 0.720063353 0.695182607 0.957552895 0.851971246 1.043863373 0.872932672 0.710410838 0.684478363 1.009658905 1 9.878857508 -9.525426892 1.307920648 0.999116543 0.812320488 0.300843024 0.113788904 0.516183971 1.592911596 0.084303591 0.020608889 2.98E-10 9.525426892 -0.186796055 YDDYRDYDS(ph)PERER ddPTM_HeLa_CUDC101_4h_R1 4 YDDYRDYDSPERER 14 2 P52756;C9JR02;C9J9P7;C9JFQ5;F8W910;P52756-3;P52756-4;P52756-2;P52756-5 P52756 RBM5 RNA-binding protein 5 1 0 YDDYRDYDS(1)PERER;YDDYRDYDS(1)PERER;YDDYRDYDS(1)PERER;YDDYRDYDS(1)PERER ;;; 87.088 0.014867 238359000 14058.7 13411.5 14139.5 12339.3 14039.5 13054.2 12329.2 14230.3 15098.9 15511.3 TRUE FALSE FALSE 12410.7605 13824.69242 14903.92414 12842.54999 13003.83406 12805.21288 12804.74137 15850.21983 14476.51695 15419.0381 0.804898491 0.896598888 0.966592342 0.83290215 0.843362211 0.830480657 0.830450077 1.027964243 0.938872896 1 13.91242515 -9.524837867 1.270220909 1.000278013 0.868224842 0.18551455 0.069132459 0.413765117 1.191266756 0.047307594 0.011236994 2.99E-10 9.524837867 -0.132053171 SVS(ph)EINSDDELSGK ddPTM_HeLa_CUDC101_4h_R1 2 SVSEINSDDELSGK 14 0 F8WF45;A0A2R8Y7M0;P82094;P82094-2 F8WF45 TMF1 TATA element modulatory factor 1 0 S(0.203)VS(0.787)EINS(0.011)DDELSGK;S(0.041)VS(0.48)EINS(0.479)DDELSGK ; 257.48 6.73E-70 260339000 12120.3 10812.5 11449 10018.1 11549.3 11376.9 11187.8 9975.4 13448.5 11940.7 TRUE FALSE FALSE 10699.57681 11145.62031 12067.96757 10426.68142 10697.33115 11159.90459 11619.31719 11110.95921 12894.14714 11869.67619 0.901421121 0.938999526 1.016705712 0.878430149 0.901231928 0.940202952 0.978907681 0.936079388 1.086309933 1 13.53499296 -9.524689332 1.270908106 1.000129932 0.933415908 0.383148968 0.047139656 0.476370805 1.373373074 0.027519015 0.006541783 2.99E-10 9.524689332 -0.066714024 IPEPS(ph)PVTR ddPTM_HeLa_CUDC101_4h_R1 2 IPEPSPVTR 9 0 H0YHT2;A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-3;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;H0YI78 H0YHT2 KIF21A Kinesin-like protein KIF21A 1 0 IPEPS(0.996)PVT(0.004)R;IPEPS(0.954)PVT(0.046)R ; 101.35 0.016478 14458800 2068.03 2526.7 2877.3 2651.5 2836.8 2546.9 2609 2608.1 2832.5 4045.8 TRUE FALSE FALSE 1825.618658 2604.544632 3032.855541 2759.639631 2627.534916 2498.322126 2709.630004 2904.995562 2715.743151 4021.735402 0.453938033 0.647617104 0.754116131 0.686181301 0.653333612 0.621204996 0.673746463 0.72232389 0.675266491 1 11.97360245 -9.524523202 1.283210663 0.999843506 0.632007724 0.064027261 0.124398258 0.212265857 0.626239417 0.067816982 0.016284764 2.99E-10 9.524523202 -0.367835782 S(ph)PSLGSDLTFATR ddPTM_HeLa_CUDC101_4h_R1 3 SPSLGSDLTFATR 13 0 Q13425 Q13425 SNTB2 Beta-2-syntrophin 1 0 S(0.986)PS(0.014)LGSDLTFATR;S(0.999)PS(0.001)LGSDLTFATR;S(0.574)PS(0.268)LGS(0.157)DLTFATR ;; 209.11 1.08E-23 117703600 1084.32 738.03 1004.63 834.53 1033.12 932.6 994.69 703.92 896.92 853.68 TRUE FALSE FALSE 957.2176533 760.7678295 1058.943337 868.5657405 956.9087959 914.8122088 1033.055526 784.0514075 859.948578 848.6022734 1.12799327 0.896495158 1.247867664 1.023525116 1.12762931 1.07802234 1.217361253 0.923932721 1.01337058 1 9.728944733 -9.524380082 1.134935065 0.997261907 1.089064488 0.066240956 0.106564325 1.020476374 2.234379236 0.077811745 0.016457525 2.99E-10 9.524380082 0.091802581 VVGQT(ph)TPESFEK ddPTM_HeLa_CUDC101_4h_R1 1 VVGQTTPESFEK 12 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 VVGQT(0.495)T(0.495)PES(0.009)FEK 136.99 0.0064842 36323000 2725.2 2725.7 2604.2 2842.2 2620.7 2880 2677 2578.2 3540.5 3315.1 TRUE FALSE FALSE 2405.756187 2809.675586 2744.990929 2958.117201 2427.376182 2825.068798 2780.252787 2871.691867 3394.559091 3295.381638 0.730038718 0.852610075 0.832981193 0.897655424 0.736599414 0.857281222 0.84368158 0.871429225 1.030095893 1 11.68622984 -9.52435223 1.27804081 1.000090881 0.817872893 0.651689708 0.05376223 0.251913323 0.736139746 0.03981377 0.009523817 2.99E-10 9.52435223 -0.182217988 RSPSPGNS(ph)PS(ph)GRT(ph)VK ddPTM_HeLa_CUDC101_4h_R1 1 RSPSPGNSPSGRTVK 15 2 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 3 0 RSPSPGNS(1)PS(1)GRT(1)VK 77.192 0.025537 12302000 2008.9 1368 1400.4 1251.9 2029.7 1593.5 1720.9 1729.7 1900.3 708.13 TRUE FALSE FALSE 1773.419787 1410.146459 1476.10986 1302.957893 1879.973075 1563.106642 1787.275689 1926.602056 1821.96883 703.9180113 2.519355605 2.003282252 2.096991178 1.851008033 2.670727336 2.220580547 2.539039577 2.736969399 2.588325345 1 9.459263591 -9.523711146 0.613484891 0.681484898 2.351253949 0 0.570439389 0.532371192 0.248743594 0.522649996 0.063243314 2.99E-10 9.523711146 1.669769051 NHSVNEEEQEEQGEGS(ph)EDEWEQVGPR ddPTM_HeLa_CUDC101_4h_R1 2 NHSVNEEEQEEQGEGSEDEWEQVGPR 26 0 Q14694;Q14694-3;Q14694-2;H3BNA1 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 NHSVNEEEQEEQGEGS(1)EDEWEQVGPR;NHSVNEEEQEEQGEGS(1)EDEWEQVGPR ; 185.22 1.95E-17 140722000 1616.79 1484.89 2328.7 1594.96 2132.7 1932.97 1695.96 1384.23 1959.11 2450.6 TRUE FALSE FALSE 1427.272327 1530.637701 2454.596566 1660.009363 1975.37497 1896.101818 1761.373745 1541.805148 1878.354657 2436.023722 0.585902475 0.628334481 1.007624246 0.681442199 0.810901368 0.77835934 0.723052789 0.632918774 0.771074041 1 11.25031247 -9.523650215 1.290679055 0.99942968 0.721142964 0.088285626 0.132740176 0.343667703 1.028371728 0.083184047 0.020121023 2.99E-10 9.523650215 -0.278286716 KT(ph)FS(ph)Y(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 KTFSYK 6 1 Q7Z340-2;M0R2M4;Q7Z340-3;Q7Z340 Q7Z340-2 ZNF551 Zinc finger protein 551 3 0 KT(1)FS(1)Y(1)K 68.485 0.02524 11467000 154.17 133.89 159.41 174.2 279.06 301.81 174.53 190.44 330.73 303.57 TRUE FALSE FALSE 136.0984263 138.0149922 168.0281868 181.304629 258.4742998 296.0534771 181.2616806 212.1189198 317.0971694 301.7643521 0.451008959 0.457360159 0.556819205 0.600815264 0.856543518 0.981075051 0.60067294 0.702929018 1.050810565 1 8.237278578 -9.523382486 1.311372497 0.997827528 0.631665261 0.460873191 0.15935181 0.385174033 1.197000204 0.123271188 0.03031349 3.00E-10 9.523382486 -0.366162267 GFGLVAYAADSS(ph)DEEEEHGGHK ddPTM_HeLa_CUDC101_4h_R1 1 GFGLVAYAADSSDEEEEHGGHK 22 0 Q7Z7F0 Q7Z7F0 KIAA0907 UPF0469 protein KIAA0907 1 0 GFGLVAYAADS(0.017)S(0.983)DEEEEHGGHK 67.644 0.0038124 8809900 4619.3 5778.8 4008.1 4679.8 5280 5190.5 4333.9 3242.4 5536 5865.5 TRUE FALSE FALSE 4077.832656 5956.837978 4224.79001 4870.662472 4890.504919 5091.49986 4501.059975 3611.50171 5307.803737 5830.611745 0.69938333 1.021648883 0.724587778 0.835360454 0.838763604 0.873235963 0.77197045 0.619403566 0.910333936 1 12.50943154 -9.52305048 1.222008947 1.002292301 0.794720457 0.245683457 0.106351527 0.426269948 1.119031617 0.075526643 0.017290584 3.00E-10 9.52305048 -0.207571844 KASVVDPSTESSPAPQEGSEQPAS(ph)PASPLSSR ddPTM_HeLa_CUDC101_4h_R1 1 KASVVDPSTESSPAPQEGSEQPASPASPLSSR 32 1 Q66K14;Q66K14-2 Q66K14 TBC1D9B TBC1 domain family member 9B 1 0 KASVVDPSTESSPAPQEGS(0.006)EQPAS(0.59)PAS(0.332)PLS(0.036)S(0.036)R 101.32 2.07E-10 105100000 1906.3 1692.5 1944.2 1580.7 1885.9 1900.3 1787.2 1800.4 1742.7 2074.4 TRUE FALSE FALSE 1682.846404 1744.643919 2049.309333 1645.167778 1746.780914 1864.054944 1856.132903 2005.350259 1670.865168 2062.061377 0.816099086 0.84606789 0.993815876 0.797826775 0.84710423 0.90397646 0.900134653 0.972497852 0.810288766 1 11.00987156 -9.5230449 1.288953312 0.99976644 0.876066678 0 0.083488408 0.394734429 1.177710907 0.042437476 0.010261025 3.00E-10 9.5230449 -0.123699762 QPGQVIGATTPSTGSPT(ph)NK ddPTM_HeLa_CUDC101_4h_R1 2 QPGQVIGATTPSTGSPTNK 19 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 QPGQVIGAT(0.001)T(0.018)PS(0.002)T(0.048)GS(0.291)PT(0.641)NK;QPGQVIGATTPS(0.007)T(0.007)GS(0.009)PT(0.976)NK ; 254.8 1.27E-56 48904000 5359.9 5631.6 5320.9 4883.6 5450.8 4862.6 4787.8 5262.1 5455.3 6151.6 TRUE FALSE FALSE 4731.620647 5805.102921 5608.563949 5082.774317 5048.705344 4769.854007 4972.46705 5861.116194 5230.430225 6115.01001 0.773771529 0.949320265 0.917179848 0.831196402 0.825625033 0.780023908 0.81315763 0.958480229 0.855342872 1 12.57813914 -9.522040711 1.238461393 1.001166354 0.845920277 0 0.076588977 0.362942816 0.984485956 0.04829552 0.01122842 3.01E-10 9.522040711 -0.155246077 FQPHFGQQECVS(ph)PYR ddPTM_HeLa_CUDC101_4h_R1 1 FQPHFGQQECVSPYR 15 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 0 FQPHFGQQECVS(1)PYR 87.356 0.0087211 6252200 4646.9 3747.9 3558.4 3552.5 3860.2 3612.1 3299.8 3398.4 3590 3039.4 TRUE FALSE FALSE 4102.197426 3863.368357 3750.777868 3697.386305 3575.440737 3543.205211 3427.074391 3785.260119 3442.01868 3021.321514 1.357749385 1.278701502 1.24143619 1.223764597 1.183402932 1.172733585 1.134296491 1.25284916 1.139242767 1 11.560964 -9.521823911 1.292865755 1.000706247 1.241126186 0.397703495 0.071616374 0.24364666 0.732540411 0.050925272 0.012375271 3.01E-10 9.521823911 0.240419939 TNPPTQKPPS(ph)PPMSGR ddPTM_HeLa_CUDC101_4h_R1 3 TNPPTQKPPSPPMSGR 16 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 TNPPT(0.007)QKPPS(0.957)PPMS(0.036)GR;TNPPT(0.005)QKPPS(0.803)PPMS(0.192)GR;T(0.001)NPPT(0.009)QKPPS(0.627)PPMS(0.363)GR ;; 83.292 0.0074015 733660000 7019.6 6188.3 7218.4 6752 6725.4 6119.3 6304.4 6764.8 6888.6 7557.4 TRUE FALSE FALSE 6196.773129 6378.954188 7608.648538 7027.375745 6229.280641 6002.584548 6547.56282 7534.877488 6604.648992 7512.448249 0.82486733 0.849117888 1.012805451 0.935430836 0.829194483 0.799018422 0.871561787 1.00298561 0.879160664 1 12.87506743 -9.520848888 1.280332284 0.999902513 0.881579193 0 0.078778384 0.500082891 1.469665767 0.051252775 0.012351681 3.01E-10 9.520848888 -0.11832332 SDEEDEDS(ph)DFGEEQRDCYLK ddPTM_HeLa_CUDC101_4h_R1 2 SDEEDEDSDFGEEQRDCYLK 20 1 Q5VW52;Q9HCL2 Q5VW52 GPAM "Glycerol-3-phosphate acyltransferase 1, mitochondrial" 1 0 SDEEDEDS(0.676)DFGEEQRDCY(0.324)LK;S(0.01)DEEDEDS(0.968)DFGEEQRDCY(0.022)LK ; 70.121 0.0049285 13834300 3384.9 3215.1 3168.8 2798.5 3730.8 2714.7 3640.9 4132.5 3036.1 1501.21 TRUE FALSE FALSE 2988.127153 3314.15342 3340.114913 2912.634926 3455.586317 2662.92162 3781.330733 4602.927096 2910.950673 1492.280736 2.002389417 2.220864573 2.238261764 1.951800928 2.315640907 1.784464247 2.53392719 3.084491399 1.950672285 1 10.54330325 -9.520782313 0.198909776 1.64E-16 2.689735862 0.352263188 0.410412398 3.684964429 0.204540683 2.626311539 0.508027269 3.01E-10 9.520782313 2.689735862 QIASNSPGS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 QIASNSPGSSPK 12 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 QIAS(0.024)NS(0.204)PGS(0.5)S(0.272)PK 94.688 0.016038 33242000 2193.5 2167.9 2088.7 2166.6 2023.1 2293.5 2043.3 2379.1 2590.3 2628.2 TRUE FALSE FALSE 1936.381255 2234.690429 2201.62144 2254.963313 1873.859944 2249.755309 2122.110765 2649.927127 2483.526738 2612.56735 0.741179459 0.855361845 0.842704185 0.863121601 0.717248474 0.861128158 0.812270262 1.014300025 0.950607738 1 11.35125251 -9.520639903 1.273399352 1.000069045 0.824760157 0.31571397 0.077770998 0.351790753 1.020648333 0.053318045 0.012782951 3.02E-10 9.520639903 -0.175308888 IET(ph)DEEESCDNAHGDANQPAR ddPTM_HeLa_CUDC101_4h_R1 2 IETDEEESCDNAHGDANQPAR 21 0 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 IET(0.983)DEEES(0.017)CDNAHGDANQPAR;IET(0.597)DEEES(0.403)CDNAHGDANQPAR ; 153.34 6.59E-07 233210000 3628.1 3118.1 2716.76 3178.1 3401.5 3518.3 3089.9 2318.76 3459.2 3044.32 TRUE FALSE FALSE 3202.819618 3214.164965 2863.636263 3307.716655 3150.578122 3451.194289 3209.078478 2582.718266 3316.610312 3026.212249 1.058359214 1.06210824 0.946277401 1.09302203 1.041096216 1.140433653 1.06042743 0.853449148 1.095960904 1 11.56329746 -9.520471402 1.282917157 1.000054644 1.039456328 0 0.08154607 1.474747347 4.355573179 0.050353631 0.012167184 3.02E-10 9.520471402 0.039401684 LLEAAAQS(ph)TK ddPTM_HeLa_CUDC101_4h_R1 1 LLEAAAQSTK 10 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 LLEAAAQS(0.916)T(0.084)K 99.732 0.016544 6027000 1294.9 1179 1153.4 1305.8 1380.9 1328.6 1174.9 1072 1657.1 1432 TRUE FALSE FALSE 1143.113785 1215.323593 1215.756293 1359.056168 1279.033758 1303.259169 1220.216287 1194.032147 1588.793637 1423.4824 0.803040336 0.853767909 0.854071882 0.954740408 0.898524462 0.915542875 0.857205039 0.838810614 1.116131563 1 10.47520894 -9.520076387 1.286769496 0.999698605 0.866927478 0.596890754 0.056193299 0.283581262 0.843665108 0.032651552 0.007918758 3.02E-10 9.520076387 -0.132771127 YRS(ph)PEPDPYLSYR ddPTM_HeLa_CUDC101_4h_R1 2 YRSPEPDPYLSYR 13 1 H3BUL5;H3BVF8;H3BQG1;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 Y(0.028)RS(0.972)PEPDPYLSYR;Y(0.056)RS(0.944)PEPDPYLSYR ; 140.49 0.00041478 258623000 8082.2 6667.3 6200.3 6228.5 7208.2 7108.6 6668.2 5687.6 6646.2 6100.2 TRUE FALSE FALSE 7134.816768 6872.71161 6535.506973 6482.525152 6676.465447 6973.015299 6925.394708 6335.053394 6372.240823 6063.915739 1.176602228 1.133378481 1.077770084 1.069032854 1.101015537 1.149919557 1.142066448 1.044713295 1.050845872 1 12.56603399 -9.520013591 1.282089949 1.000167968 1.119431899 0.383452857 0.041453896 0.289552133 0.854017092 0.029911178 0.007228139 3.02E-10 9.520013591 0.119263931 K(ac)DILAELTK(ac)SQK ddPTM_HeLa_CUDC101_4h_R1 17 KDILAELTKSQK 12 2 C9J266;Q5XPI4;Q5XPI4-2 C9J266 RNF123 E3 ubiquitin-protein ligase RNF123 0 2 ;;;;;;;;;;;;;;;; K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK;K(1)DILAELTK(1)SQK 140.17 2.13E-07 958385630 10410.751 19105.99 29009.518 54871.65 56830.78 62438.287 54401.37 42437.05 3561.03 2909.96 FALSE TRUE FALSE 9190.418549 19694.62291 30577.86029 57109.55306 52638.48658 61247.3807 56499.64906 47267.91224 3414.242836 2892.651429 3.177160739 6.808501955 10.57087625 19.74297784 18.19731408 21.17343974 19.53213184 16.34068722 1.180316025 1 11.49817677 -6.64421336 1.338390954 1.908176416 19.41962034 0.960273519 1.547063161 0.050596447 0.182517486 0.272801681 0.43038224 2.27E-07 6.64421336 17.51144393 up STAQQELDGKPAS(ph)PTPVIVASHTANKEEK ddPTM_HeLa_CUDC101_4h_R1 4 STAQQELDGKPASPTPVIVASHTANKEEK 29 2 H0YAC7;P35606-2;P35606 H0YAC7 COPB2 Coatomer subunit beta 1 0 STAQQELDGKPAS(0.843)PT(0.156)PVIVASHTANKEEK;STAQQELDGKPAS(0.836)PT(0.164)PVIVASHTANKEEK;STAQQELDGKPAS(0.5)PT(0.5)PVIVASHTANKEEK;STAQQELDGKPAS(0.854)PT(0.145)PVIVAS(0.001)HTANKEEK ;;; 111.55 7.30E-11 2146263000 11291 8558.4 9501.1 9666.5 11067.6 10176.9 8831.9 8750.5 10122.1 9326.7 TRUE FALSE FALSE 9967.486096 8822.07416 10014.75821 10060.74165 10251.1652 9982.792588 9172.549341 9746.621549 9704.862754 9271.224374 1.07509922 0.95155438 1.080198019 1.085157822 1.105697024 1.076750188 0.98935685 1.051276634 1.046772504 1 13.17854416 -9.519488356 1.037860533 0.997081271 1.053841707 0.015320864 0.04689274 0.916149856 1.609167971 0.041472085 0.008054334 3.02E-10 9.519488356 0.056760435 ARSMDS(ph)S(ph)DLSDGAVT(ph)LQEY(ph)LELK ddPTM_HeLa_CUDC101_4h_R1 1 ARSMDSSDLSDGAVTLQEYLELK 23 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 4 0 ARS(0.119)MDS(0.668)S(0.638)DLS(0.638)DGAVT(0.94)LQEY(0.998)LELK 45.047 0.0031988 0 1558.6 1262.9 1223.5 1145.9 1365.3 1032.7 1268.8 1005 1335.2 994.42 TRUE FALSE FALSE 1375.903271 1301.808452 1289.646111 1192.634755 1264.584539 1013.002968 1317.738041 1119.405138 1280.162491 988.5051456 1.391902993 1.316946561 1.30464279 1.206503335 1.279289789 1.024782696 1.333061388 1.132422166 1.295048889 1 9.949104666 -9.519452941 1.292856022 1.000940237 1.264599733 0 0.135426377 0.319433365 0.961271775 0.073122465 0.017836439 3.02E-10 9.519452941 0.263659496 AVEES(ph)SDEER ddPTM_HeLa_CUDC101_4h_R1 1 AVEESSDEER 10 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 AVEES(0.5)S(0.5)DEER 97.472 0.018997 3395900 2884.3 1419.6 2792.3 2651.5 2009.4 2078.3 1687.3 914.94 3385.6 3646.4 TRUE FALSE FALSE 2546.206726 1463.336193 2943.260184 2759.639631 1861.170565 2038.65989 1752.379726 1019.093071 3246.044135 3624.711051 0.702457849 0.40371113 0.811998568 0.761340585 0.513467291 0.562433767 0.483453633 0.281151534 0.895531834 1 11.82365028 -9.519044639 0.089413596 1.795759706 1.68E-14 0.635927763 0.131396314 19.98040258 0.42089553 6.198634002 2.651975527 3.03E-10 9.519044639 -1.795759706 APS(ph)PASFQR ddPTM_HeLa_CUDC101_4h_R1 1 APSPASFQR 9 0 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GV63;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;H0Y7H8;Q8NFD5-4 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 1 0 APS(0.994)PAS(0.006)FQR 97.452 0.020131 10432000 1373.1 1375.3 1206.9 1687.4 1639.7 1100.7 1448.4 1151.7 1678.8 1708.6 TRUE FALSE FALSE 1212.147299 1417.671363 1272.148665 1756.219466 1518.742598 1079.705981 1504.265273 1282.804873 1609.599153 1698.437171 0.713683921 0.834691672 0.749011318 1.034020861 0.894200047 0.635705577 0.885676137 0.755285444 0.947694257 1 10.72999214 -9.518890872 1.273150425 0.999994805 0.805889506 0.26499639 0.105972971 0.444903041 1.291103246 0.074583656 0.017927934 3.03E-10 9.518890872 -0.194105299 IES(ph)FGSPK ddPTM_HeLa_CUDC101_4h_R1 1 IESFGSPK 8 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 IES(0.898)FGS(0.102)PK 114.86 0.0093654 20899000 5196.3 4863.2 4797 5360.2 4856.3 4748.5 4291.3 4742.6 4977.3 5453.5 TRUE FALSE FALSE 4587.197591 5013.029428 5056.34033 5578.812125 4498.060424 4657.930274 4456.816878 5282.478414 4772.133587 5421.062339 0.846180565 0.924731928 0.932721303 1.029099423 0.829737816 0.859228318 0.822129797 0.974436021 0.880294911 1 12.40435988 -9.518863764 1.253857406 1.000385477 0.895315434 0 0.072788601 0.508975109 1.424110167 0.045952753 0.010875675 3.03E-10 9.518863764 -0.105070042 SLTSS(ph)LENIFSR ddPTM_HeLa_CUDC101_4h_R1 1 SLTSSLENIFSR 12 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 0 SLTS(0.192)S(0.808)LENIFSR 123.28 0.0028204 115940000 2779.5 2128.1 2296.4 2245.4 2454.7 2594.8 2284.9 1917.9 2512.9 2162.6 TRUE FALSE FALSE 2453.691223 2193.664239 2420.55033 2336.977117 2273.621671 2545.308513 2373.029358 2136.225984 2409.317198 2149.736759 1.141391481 1.020433888 1.125975225 1.087099203 1.057627945 1.184009392 1.103869741 0.993715149 1.120749872 1 11.06994429 -9.518468011 1.237376213 0.999341418 1.096564428 0 0.064873233 0.452581109 1.226918886 0.037631801 0.008792029 3.03E-10 9.518468011 0.09722301 GEMMDLQHGS(ph)LFLR ddPTM_HeLa_CUDC101_4h_R1 1 GEMMDLQHGSLFLR 14 0 P00338-3;P00338;P00338-4;P00338-2;P00338-5;F5GYU2;F5GXY2;F5GXH2;F5H6W8;F5H5J4 P00338-3 LDHA L-lactate dehydrogenase A chain 1 0 GEMMDLQHGS(1)LFLR 87.419 0.011212 2685000 2557 1921.4 2207.2 1923.1 1934.8 1991.3 1972.8 1582.8 1626.4 1605.9 TRUE FALSE FALSE 2257.272336 1980.596057 2326.527908 2001.53233 1792.073659 1953.31927 2048.891557 1762.979554 1559.359104 1596.348035 1.414022686 1.240704416 1.457406441 1.253819522 1.122608365 1.223617424 1.283486753 1.104382951 0.97682903 1 10.64055951 -9.518422043 1.281749731 1.00049975 1.280306414 0.508235232 0.106001884 0.321544618 0.948377058 0.077853371 0.018856289 3.03E-10 9.518422043 0.279806664 VDSPT(ph)VTTTLK ddPTM_HeLa_CUDC101_4h_R1 1 VDSPTVTTTLK 11 0 Q07866-6;Q07866-4;G3V5R9;Q07866-9;Q07866-7;H0YG16;G3V3H3;Q07866-10;Q07866-5;Q07866-3;G5E9S8;F8W6L3;Q07866;Q07866-8;Q07866-2;G3V2E7;E7EVH7;H0YJT3;H0YJL0;H0YJU9 Q07866-6 KLC1 Kinesin light chain 1 1 0 VDS(0.429)PT(0.516)VT(0.014)T(0.04)TLK 148.13 0.0040177 72726000 4682.6 3944.6 3528.7 3103.8 3672.1 4097.4 3240.6 2444.1 4407.9 2677.1 TRUE FALSE FALSE 4133.712726 4066.12845 3719.472196 3230.38638 3401.216499 4019.248922 3365.591028 2722.326465 4226.204496 2661.17649 1.553340315 1.527943925 1.397679639 1.213894077 1.278087534 1.510327833 1.264700421 1.022978549 1.588096284 1 11.37784848 -9.518069905 1.298238736 1.001823716 1.373627607 0 0.238545435 0.357084089 1.085790573 0.115331256 0.028312469 3.03E-10 9.518069905 0.371803891 T(ph)CSFGGFDLTNR ddPTM_HeLa_CUDC101_4h_R1 1 TCSFGGFDLTNR 12 0 O94885;A0A1B0GWB9 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 0 T(0.984)CS(0.016)FGGFDLTNR 133.15 0.0070666 11813000 1330.4 1137.3 934.9 1156.7 1020.8 1081.9 1286.7 996.58 955.61 1037.8 TRUE FALSE FALSE 1174.452529 1172.338865 985.4435219 1203.875226 945.4976177 1061.26456 1336.32845 1110.026639 916.2193513 1031.627119 1.138446738 1.136397874 0.955232277 1.166967408 0.916511014 1.02872883 1.295359946 1.075995985 0.888130347 1 10.01070589 -9.517325551 1.281031409 1.000177037 1.093841357 0.180565933 0.108915217 0.862960292 2.542962146 0.069887799 0.016946967 3.04E-10 9.517325551 0.093664321 ADGGTGDS(ph)SPSPGSSLPSPLSDPR ddPTM_HeLa_CUDC101_4h_R1 2 ADGGTGDSSPSPGSSLPSPLSDPR 24 0 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 ADGGT(0.004)GDS(0.401)S(0.323)PS(0.173)PGS(0.04)S(0.04)LPS(0.016)PLS(0.004)DPR;ADGGT(0.001)GDS(0.556)S(0.432)PS(0.01)PGSSLPSPLSDPR ; 107.02 1.07E-06 26358000 3180.3 3134.8 3093.6 2862.6 3174.5 3436.6 2923.3 2504.7 3261.1 3557.6 TRUE FALSE FALSE 2807.510055 3231.379472 3260.849374 2979.349201 2940.323459 3371.052581 3036.05266 2789.824924 3126.676078 3536.439237 0.793880473 0.913738157 0.92207137 0.842471481 0.83143616 0.953233565 0.858505535 0.788879643 0.884131147 1 11.78808176 -9.516497041 1.246967024 1.000617034 0.85929803 0.108248075 0.061651734 0.319787373 0.883890706 0.038711243 0.009145085 3.04E-10 9.516497041 -0.141319005 MGAPESGLAEYLFDKHT(ph)LGDSDNES ddPTM_HeLa_CUDC101_4h_R1 1 MGAPESGLAEYLFDKHTLGDSDNES 25 1 G3V1D1;G3V192;P02794 G3V1D1 FTH1 "Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed" 1 0 MGAPESGLAEY(0.011)LFDKHT(0.629)LGDS(0.18)DNES(0.18) 75.224 0.00036126 73765000 1370.1 1373.2 1329.3 1455.2 1542.1 1514.3 952.81 1140 1446.8 1599.1 TRUE FALSE FALSE 1209.498955 1415.506664 1401.165979 1514.549346 1428.342355 1485.41725 989.5602009 1269.772992 1387.162292 1589.588482 0.760888097 0.890486236 0.881464602 0.952793357 0.898561088 0.934466541 0.622526026 0.79880611 0.872654972 1 10.63443761 -9.516387653 1.249011781 1.000651357 0.836811547 0.070742222 0.099593136 0.498662276 1.383789347 0.070018993 0.01657183 3.05E-10 9.516387653 -0.16383981 DVEGS(ph)TSPQIGDKVEFSISDK ddPTM_HeLa_CUDC101_4h_R1 1 DVEGSTSPQIGDKVEFSISDK 21 1 O75534-2;O75534;O75534-3;O75534-4;E9PLT0 O75534-2 CSDE1 Cold shock domain-containing protein E1 1 0 DVEGS(0.368)T(0.316)S(0.316)PQIGDKVEFSISDK 58.693 0.0031215 0 1352.2 1385.7 1113.5 1173 1452.7 1274.9 1097.8 1208.8 1334.6 1397 TRUE FALSE FALSE 1193.697166 1428.391775 1173.699178 1220.84001 1345.537215 1250.583407 1140.142514 1346.404906 1279.587223 1388.690582 0.859584692 1.028588941 0.845184085 0.87913033 0.968925139 0.900548634 0.821019836 0.969549966 0.921434364 1 10.43950947 -9.516191764 1.194621392 1.00145298 0.903087042 0.034618147 0.065271941 0.528069225 1.316164409 0.04382244 0.009910285 3.05E-10 9.516191764 -0.098365938 DEVT(ph)WLVRHT(ph)ENVT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 DEVTWLVRHTENVTK 15 1 F8W050;P55160-2;P55160 F8W050 NCKAP1L Nck-associated protein 1-like 3 0 DEVT(1)WLVRHT(1)ENVT(1)K 67.43 0.0028138 0 307.23 339.83 317.64 311.89 395.96 397.74 355.35 325.42 421.58 486.2 TRUE FALSE FALSE 271.2169651 350.2997595 334.8125792 324.6102223 366.7508197 390.1537722 369.0559685 362.4644974 404.202294 483.3080608 0.561167891 0.724796021 0.692751904 0.671642475 0.758834477 0.807256911 0.763604 0.749965761 0.836324338 1 8.916799247 -9.516140936 1.273585564 0.999748808 0.701931684 0.458272663 0.08021054 0.218742228 0.636004746 0.05618438 0.013569357 3.05E-10 9.516140936 -0.297817124 FTSQQGPIKPVS(ph)PNSSPFGTDYR ddPTM_HeLa_CUDC101_4h_R1 1 FTSQQGPIKPVSPNSSPFGTDYR 23 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 FT(0.001)S(0.001)QQGPIKPVS(0.432)PNS(0.162)S(0.162)PFGT(0.206)DY(0.036)R 49.095 0.02757 33922000 1936.5 2037.2 2014.1 2262.6 2323.5 2241.1 1775.1 1483.2 2439.5 2639.2 TRUE FALSE FALSE 1709.506406 2099.963717 2122.988338 2354.878608 2152.100034 2198.354751 1843.566202 1652.041493 2338.942777 2623.501921 0.651612409 0.800442988 0.809219281 0.897608875 0.820315784 0.83794669 0.702711969 0.629708513 0.891534616 1 11.35727813 -9.515937349 1.26169023 1.000328467 0.762769882 0.383961761 0.086036012 0.314035441 0.892935512 0.06413542 0.015347615 3.05E-10 9.515937349 -0.237558585 LRQT(ph)T(ph)GLMEY(ph)CLEVIK ddPTM_HeLa_CUDC101_4h_R1 1 LRQTTGLMEYCLEVIK 16 1 Q9C026-5;Q9C026;Q9C026-4 Q9C026-5 TRIM9 E3 ubiquitin-protein ligase TRIM9 3 0 LRQT(1)T(1)GLMEY(1)CLEVIK 75.764 0.0097553 27670000 2546.3 2975.6 3095.8 2560.5 3368.7 2992.1 2121.4 2126.9 4071.6 3709.4 TRUE FALSE FALSE 2247.826574 3067.274709 3263.168312 2664.928257 3120.197712 2935.030678 2203.223109 2369.017699 3903.766925 3687.336324 0.609607146 0.831840234 0.884966281 0.722724488 0.846192872 0.795975854 0.597510754 0.642473995 1.05869565 1 11.8483633 -9.515682428 1.242721222 1.00134336 0.733101353 0.569671461 0.098472097 0.332198127 0.911020023 0.076209183 0.017964339 3.05E-10 9.515682428 -0.268242007 (ac)AFS(ph)QVQCLDDNHVNWR ddPTM_HeLa_CUDC101_4h_R1 1 AFSQVQCLDDNHVNWR 16 0 A6ND36 A6ND36 FAM83G Protein FAM83G 1 0 AFS(1)QVQCLDDNHVNWR 97.911 0.0007114 4226200 146.17 122.56 114.86 112.23 204.22 0 121.35 118.28 117.74 169.42 TRUE FALSE FALSE 129.0361742 126.3359283 121.069679 116.8072245 189.1550975 0 126.0305101 131.7445171 112.8867074 168.4122823 0.766192183 0.750158638 0.718888655 0.693579013 1.123166879 0 0.748345123 0.782273806 0.67029973 1 7.395853548 -9.51556994 0.17527239 1.294981622 0.549210468 0 0.278162909 14.85761394 0.696125753 2.708583429 0.605614496 3.05E-10 9.51556994 -0.745771154 AVGT(ph)FARALDCS(ph)S(ph)S(ph)VR ddPTM_HeLa_CUDC101_4h_R1 1 AVGTFARALDCSSSVR 16 1 E7EQY4;F6RRE2;E7EV10;Q9BTC8-2;Q9BTC8;E9PCS8 E7EQY4 MTA3 Metastasis-associated protein MTA3 4 0 AVGT(1)FARALDCS(1)S(1)S(1)VR 56.599 0.038229 1963800 195.37 275.38 218.52 125.7 172.85 362.58 151.41 270.23 192.19 316.42 TRUE FALSE FALSE 172.4690248 283.8641314 230.3338522 130.8265893 160.0991999 355.6643906 157.2499344 300.9918909 184.2678469 314.5379198 0.548325063 0.90247984 0.732292794 0.415932646 0.508998088 1.130752028 0.499939513 0.956933559 0.585836668 1 8.297090144 -9.51552608 1.235996767 1.001947831 0.690792935 0 0.252223556 0.571075655 1.545935172 0.1516746 0.035564124 3.05E-10 9.51552608 -0.311154897 RSSPS(ph)ARPPDVPGQQPQAAK ddPTM_HeLa_CUDC101_4h_R1 2 RSSPSARPPDVPGQQPQAAK 20 2 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 0 RS(0.125)S(0.335)PS(0.54)ARPPDVPGQQPQAAK;RS(0.313)S(0.313)PS(0.375)ARPPDVPGQQPQAAK ; 52.227 0.020966 124129000 3989.7 3362.4 4169.5 3641 3888.1 3720.1 3536.3 4398.5 4654.6 4453.7 TRUE FALSE FALSE 3522.033414 3465.991559 4394.915782 3789.495718 3601.282609 3649.145291 3672.696276 4899.207461 4462.735418 4427.209194 0.795542578 0.782884071 0.992705695 0.855955875 0.813443063 0.824254091 0.829573692 1.106613048 1.008024519 1 12.11218183 -9.515475389 1.290025562 0.999441513 0.861461539 0.210551358 0.096394566 0.537447239 1.611441258 0.06419695 0.015723576 3.05E-10 9.515475389 -0.137979974 S(ph)PSELFAQHIVTIVHHVK ddPTM_HeLa_CUDC101_4h_R1 2 SPSELFAQHIVTIVHHVK 18 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.843)PS(0.157)ELFAQHIVTIVHHVK;S(0.99)PS(0.01)ELFAQHIVTIVHHVK ; 133.93 5.76E-05 50693000 5312.2 4938.5 5021.9 5012.2 5071.9 4583.1 4978.4 4744.1 4975.3 5569.6 TRUE FALSE FALSE 4689.511969 5090.649331 5293.399104 5216.619181 4697.756042 4495.685003 5170.418556 5284.149168 4770.216028 5536.471771 0.847021743 0.919475352 0.956096106 0.942228082 0.848510791 0.81201263 0.933883305 0.954425379 0.861598546 1 12.43475117 -9.5148706 1.249360046 1.00036492 0.895496538 0 0.063816153 0.41295418 1.147437398 0.037087053 0.008801531 3.06E-10 9.5148706 -0.104868382 TS(ph)PTVATQTGASATSTR ddPTM_HeLa_CUDC101_4h_R1 2 TSPTVATQTGASATSTR 17 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 T(0.161)S(0.839)PTVATQTGASATSTR;T(0.23)S(0.77)PTVATQTGASATSTR ; 172.42 4.05E-07 143506000 5322.8 4801.2 4753.5 4591.7 4648.5 5065.5 4695.2 4988 5224.6 5228.6 TRUE FALSE FALSE 4698.869453 4949.119281 5010.488589 4778.969373 4305.589416 4968.884027 4876.295437 5555.813758 5009.239777 5197.500055 0.904063377 0.952211492 0.964018958 0.919474617 0.828396223 0.956014233 0.93820017 1.068939625 0.963778687 1 12.34360215 -9.513914798 1.253479187 1.000158744 0.934476755 0.050865872 0.057669753 0.706647325 1.979809629 0.039772191 0.009485028 3.06E-10 9.513914798 -0.065681989 FVSEDDRNS(ph)FTLK ddPTM_HeLa_CUDC101_4h_R1 1 FVSEDDRNSFTLK 13 1 A0A087WYC1;P34932 A0A087WYC1 HSPA4 Heat shock 70 kDa protein 4 1 0 FVSEDDRNS(0.992)FT(0.008)LK 73.802 0.024879 51029000 5137.3 3959.8 4045.8 3891.1 4547.8 4134.9 4250.8 4271.8 3982.6 3821.5 TRUE FALSE FALSE 4535.113482 4081.796744 4264.528186 4049.795877 4212.317854 4056.033672 4414.75478 4758.084445 3818.435542 3798.769548 1.193837485 1.074504966 1.122607763 1.066080957 1.108863752 1.067723014 1.162153883 1.25253306 1.005176938 1 11.89131648 -9.51350197 1.241162636 0.999369629 1.132763212 0.452946706 0.056363667 0.373175381 1.0212502 0.04250494 0.010041701 3.07E-10 9.51350197 0.133393583 EQPGEEYSEEEES(ph)VLK ddPTM_HeLa_CUDC101_4h_R1 1 EQPGEEYSEEEESVLK 16 0 Q96PY6-4;Q96PY6-2;Q96PY6-6;Q96PY6;Q96PY6-3 Q96PY6-4 NEK1 Serine/threonine-protein kinase Nek1 1 0 EQPGEEY(0.002)S(0.256)EEEES(0.742)VLK 159.14 7.04E-05 10637000 1945.5 1517.3 2112.9 1793.2 2008.1 1653.4 1771.6 1914.5 1849.2 2090.3 TRUE FALSE FALSE 1717.451439 1564.046215 2227.129765 1866.334447 1859.966464 1621.86415 1839.931205 2132.438941 1772.975193 2077.866803 0.826545492 0.752717264 1.071834712 0.898197346 0.895132672 0.780542885 0.885490448 1.02626354 0.85326701 1 11.02088746 -9.513370796 1.301609752 0.999214908 0.882532845 0 0.103504114 0.620632179 1.90217004 0.062792734 0.015570142 3.07E-10 9.513370796 -0.116682062 SAS(ph)LSHPGGEGEPAR ddPTM_HeLa_CUDC101_4h_R1 1 SASLSHPGGEGEPAR 15 0 C9JXU1;A6NN40;Q2M3G4-2;Q2M3G4 C9JXU1 SHROOM1 Protein Shroom1 1 0 S(0.006)AS(0.497)LS(0.497)HPGGEGEPAR 119.62 0.00094242 4153000 719.71 440.95 408.05 509.13 678.2 485.18 771.79 489.18 611.86 421.99 TRUE FALSE FALSE 635.3466848 454.5351468 430.1104173 529.894522 628.1705372 475.9259999 801.5581988 544.8662739 586.6388718 419.4799847 1.514605483 1.08356814 1.02534193 1.263217654 1.497498236 1.134561879 1.910837771 1.298908872 1.398490734 1 8.712458165 -9.51302865 1.185434761 0.994235256 1.356801484 0 0.272861492 0.616585016 1.510370059 0.187764039 0.042341948 3.07E-10 9.51302865 0.362566228 AVQQHQHGYDS(ph)DEEVDSELGTWEHQLR ddPTM_HeLa_CUDC101_4h_R1 4 AVQQHQHGYDSDEEVDSELGTWEHQLR 27 0 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 0 AVQQHQHGY(0.006)DS(0.994)DEEVDSELGTWEHQLR;AVQQHQHGY(0.051)DS(0.949)DEEVDSELGTWEHQLR;AVQQHQHGY(0.43)DS(0.569)DEEVDS(0.001)ELGTWEHQLR;AVQQHQHGY(0.003)DS(0.997)DEEVDSELGTWEHQLR ;;; 181.88 1.61E-17 127748000 3685.57 2929.95 3077.78 2681.95 3744.61 3356.76 2857.74 2644.37 2947.08 2908.34 TRUE FALSE FALSE 3253.553072 3020.218287 3244.174097 2791.331513 3468.377581 3292.735396 2967.963989 2945.394392 2825.600115 2891.041064 1.125391511 1.044681905 1.12214736 0.965510849 1.199698483 1.138944526 1.026607344 1.018800607 0.977364227 1 11.49737339 -9.512701882 1.245039056 0.999679557 1.085854721 0.224959188 0.066029392 0.619837991 1.709581666 0.045637675 0.010830098 3.07E-10 9.512701882 0.086175164 VAPPYPHLFSSCSPPGMVLDGS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 VAPPYPHLFSSCSPPGMVLDGSPK 24 0 Q9BUK6-2;Q9BUK6;V9GYF2;Q9BUK6-6;Q9BUK6-5 Q9BUK6-2 MSTO1 Protein misato homolog 1 1 0 VAPPYPHLFSSCSPPGMVLDGS(1)PK;VAPPYPHLFSSCSPPGMVLDGS(1)PK ; 166.85 5.85E-10 29772000 5590.8 3094.3 2408.16 2271.66 6013.2 5026.6 4572.6 4178 4733.4 2461.6 TRUE FALSE FALSE 4935.454899 3189.631715 2538.352414 2364.308114 5569.618216 4930.72598 4748.966714 4653.606632 4538.287249 2446.958294 2.016975488 1.303508819 1.037350093 0.966223298 2.276139414 2.015042918 1.940763243 1.901792378 1.854664732 1 11.2567738 -9.511691844 1.19942158 0.990989419 1.703625968 0 0.494451209 0.573513181 1.446330048 0.344508015 0.078807656 3.08E-10 9.511691844 0.712636548 KSIKPSDSPRSICS(ph)DSS(ph)SK ddPTM_HeLa_CUDC101_4h_R1 1 KSIKPSDSPRSICSDSSSK 19 3 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 2 0 KSIKPSDSPRS(0.087)ICS(0.595)DS(0.407)S(0.493)S(0.418)K 69.913 0.0014085 0 1616.4 1692.9 1414.4 1520.5 1750.1 1434.6 1398.4 1640.5 1906.3 1831.6 TRUE FALSE FALSE 1426.928042 1745.056242 1490.866742 1582.512562 1620.99861 1407.237395 1452.336756 1827.247889 1827.721507 1820.705562 0.78372257 0.958450547 0.81884011 0.869175442 0.890313428 0.772907726 0.797677992 1.003593292 1.003853421 1 10.83028192 -9.510912567 1.22432233 1.00109987 0.85110565 0.370587469 0.071700019 0.394674222 1.046334515 0.050242819 0.011753632 3.08E-10 9.510912567 -0.149994221 DTSATSQSVNGS(ph)PQAEQPSLESTSK ddPTM_HeLa_CUDC101_4h_R1 2 DTSATSQSVNGSPQAEQPSLESTSK 25 0 C9J0I9;Q86WB0;Q86WB0-2;Q86WB0-3;F8WAU5 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 DTSAT(0.001)S(0.005)QS(0.126)VNGS(0.868)PQAEQPSLESTSK;DTSATSQS(0.01)VNGS(0.989)PQAEQPSLESTSK ; 157.2 3.54E-11 42040000 6609.6 6296.4 5967.5 6338.5 7475.5 6495.5 6079.5 5597.4 7168.6 7479.7 TRUE FALSE FALSE 5834.832708 6490.384621 6290.121101 6597.011427 6924.047258 6371.60916 6313.988351 6234.585391 6873.107274 7435.210412 0.784756905 0.87292548 0.845991001 0.887266273 0.931251017 0.856950753 0.849201032 0.838521716 0.924399834 1 12.86015785 -9.510412661 1.258404239 1.000081181 0.852758748 0.46400921 0.04175064 0.234980827 0.665488185 0.029646427 0.007138216 3.09E-10 9.510412661 -0.147322433 QISGQYSGS(ph)PQLLK ddPTM_HeLa_CUDC101_4h_R1 2 QISGQYSGSPQLLK 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 QISGQYS(0.007)GS(0.993)PQLLK;QISGQYS(0.008)GS(0.992)PQLLK ; 168.68 5.69E-07 56583000 4844.6 3520.9 3414.9 3682.5 3986.7 3946.3 3976.6 4170.5 3722.6 3295 TRUE FALSE FALSE 4276.723332 3629.374756 3599.519824 3832.688267 3692.609084 3871.030902 4129.978794 4645.252862 3569.152852 3275.401193 1.305709768 1.108070292 1.098955398 1.170143149 1.127376118 1.18184939 1.260907764 1.418224086 1.089684177 1 11.67745591 -9.510130775 1.220586194 0.99831912 1.210779273 0.302017594 0.096752544 0.404231061 1.064165881 0.072782791 0.016994606 3.09E-10 9.510130775 0.212460153 ASDSGPSSSSSSSS(ph)SPPR ddPTM_HeLa_CUDC101_4h_R1 1 ASDSGPSSSSSSSSSPPR 18 0 Q16643-3 Q16643-3 DBN1 Drebrin 1 0 ASDSGPSSSS(0.001)S(0.004)S(0.03)S(0.141)S(0.682)S(0.141)PPR 142.4 8.91E-05 1962400 672.09 659.03 851.04 760.56 832.13 917.88 522.11 508.77 1080.4 974.02 TRUE FALSE FALSE 593.308629 679.3339332 897.0497967 791.5789242 770.7454277 900.3729683 542.2479576 566.6863203 1035.865455 968.2264857 0.612778764 0.701627092 0.926487562 0.817555537 0.796038364 0.929919788 0.560042475 0.585282812 1.069858623 1 9.919200749 -9.509984546 1.259077224 1.000082973 0.735051757 0.451302983 0.127105155 0.414807593 1.176476739 0.094143467 0.022695449 3.09E-10 9.509984546 -0.265031216 NLDNVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 NLDNVSPK 8 0 A0A0A0MSG8;P78563-6;P78563-2;P78563-3;P78563-4;P78563;P78563-5 A0A0A0MSG8 ADARB1 Double-stranded RNA-specific editase 1 1 0 NLDNVS(1)PK 98.898 0.019852 57114000 5101.5 4113.9 4345 4313.1 3481.1 4276.5 3882.1 3886.6 3864.5 3637.1 TRUE FALSE FALSE 4503.509903 4240.644383 4579.903843 4489.006861 3224.306188 4194.932888 4031.833897 4329.034834 3705.203674 3615.466367 1.245623509 1.172917669 1.26675327 1.24161212 0.891809205 1.16027435 1.115162883 1.197365538 1.024820396 1 11.81996604 -9.509875827 1.2772492 1.000531991 1.167470731 0.256986282 0.100787513 0.4990946 1.464700248 0.071676835 0.017534773 3.09E-10 9.509875827 0.166938739 S(ph)NTLDIMDGR ddPTM_HeLa_CUDC101_4h_R1 1 SNTLDIMDGR 10 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 S(0.931)NT(0.069)LDIMDGR 94.547 0.022171 1302600 1024.2 894.97 1045.9 979.89 1025.7 875.55 1156.9 818.91 1194.9 1148 TRUE FALSE FALSE 904.1448286 922.5429649 1102.444518 1019.85415 950.0361545 858.8503425 1201.522021 912.1314043 1145.645716 1141.171645 0.79229521 0.808417357 0.966063714 0.893690405 0.832509429 0.752603998 1.052884573 0.799293786 1.003920595 1 10.15630009 -9.509664358 1.272368457 0.999676834 0.858206927 0.296927202 0.085518496 0.477263931 1.388066812 0.058006558 0.014140499 3.09E-10 9.509664358 -0.141469907 FTS(ph)PADLDASGAGPGPK ddPTM_HeLa_CUDC101_4h_R1 2 FTSPADLDASGAGPGPK 17 0 P52735-3;P52735-2;P52735 P52735-3 VAV2 Guanine nucleotide exchange factor VAV2 1 0 FT(0.032)S(0.968)PADLDASGAGPGPK;FT(0.111)S(0.889)PADLDASGAGPGPK ; 209.6 1.06E-23 27311000 6113.6 4762.5 4695.2 4563.6 5063 4874.9 4384.3 4116.4 4952.8 3793.1 TRUE FALSE FALSE 5396.973076 4909.22698 4949.036714 4749.723334 4689.512577 4781.919405 4553.40392 4584.994337 4748.643488 3770.538473 1.431353403 1.301996258 1.312554361 1.25969364 1.243724898 1.268232492 1.207626962 1.216005186 1.25940725 1 11.88055485 -9.509512867 1.267592264 1.000425526 1.294737191 0.075155781 0.098783247 0.211613678 0.610009679 0.053436951 0.012980211 3.09E-10 9.509512867 0.294311665 S(ph)HSAPSEVGFSDAR ddPTM_HeLa_CUDC101_4h_R1 2 SHSAPSEVGFSDAR 14 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 S(0.792)HS(0.043)APS(0.161)EVGFS(0.003)DAR;S(0.885)HS(0.115)APSEVGFSDAR ; 120.6 0.0014265 16166200 1021.39 1133.26 1124.35 985.18 1239.82 1121.07 1093.98 635.73 1227.58 1368.01 TRUE FALSE FALSE 901.6642125 1168.174397 1185.135762 1025.359899 1148.360949 1099.687458 1136.175175 708.0989335 1176.978633 1359.873016 0.663050301 0.859031971 0.871504728 0.754011505 0.844461899 0.808669225 0.835500934 0.5207096 0.865506278 1 10.40925622 -9.509495194 1.231133696 1.001311244 0.768095965 0.233141919 0.109032754 0.369629278 0.993697713 0.073246659 0.017271976 3.09E-10 9.509495194 -0.233215279 LGPGRPLPTFPTSECT(ph)SDVEPDTR ddPTM_HeLa_CUDC101_4h_R1 3 LGPGRPLPTFPTSECTSDVEPDTR 24 1 Q8TDD1-2;Q8TDD1;H0YHZ9 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 LGPGRPLPTFPTSECT(0.5)S(0.5)DVEPDTR;LGPGRPLPTFPTS(0.001)ECT(0.499)S(0.499)DVEPDTR;LGPGRPLPTFPT(0.009)S(0.023)ECT(0.483)S(0.483)DVEPDT(0.002)R ;; 119.18 2.37E-08 187942000 4163.71 3669.58 2866.53 3189.95 3201.81 3395.8 3046.28 3091.68 2984.06 2712.73 TRUE FALSE FALSE 3675.646226 3782.63541 3021.503283 3320.049949 2965.618855 3331.030773 3163.77604 3443.624354 2861.055784 2696.594561 1.363069658 1.402745324 1.120488532 1.231201011 1.099764458 1.235273118 1.173248691 1.277027108 1.060988487 1 11.39692291 -9.50912743 1.288335337 1.001328108 1.247220439 0.442281873 0.09211059 0.320606082 0.960636133 0.067977703 0.016794932 3.10E-10 9.50912743 0.24589233 APALS(ph)PTRPPK ddPTM_HeLa_CUDC101_4h_R1 1 APALSPTRPPK 11 1 O94875-12;O94875-4;O94875-10;O94875-5;O94875-3;H7BXR3 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 APALS(0.73)PT(0.27)RPPK 108.56 0.037014 21271000 931.98 1119.1 1127.4 1100.5 1069.2 972.31 720.33 927.67 1193.9 1366.1 TRUE FALSE FALSE 822.7347172 1153.578145 1188.350654 1145.383147 990.3272461 953.7648067 748.1133694 1033.272203 1144.686937 1357.974376 0.605854375 0.849484471 0.875090631 0.843449749 0.729267992 0.702343743 0.550903892 0.760892268 0.842937066 1 10.40724054 -9.508676265 1.220134096 1.002088263 0.727941059 0.265641639 0.109031195 0.347182788 0.913735017 0.080589015 0.018854214 3.10E-10 9.508676265 -0.274147204 EGGSKS(ph)DSEDITR ddPTM_HeLa_CUDC101_4h_R1 1 EGGSKSDSEDITR 13 1 E9PDC4;F5GYS8;H0YNY8;U3KPR8;O00470;O00470-2 E9PDC4 MEIS1 Homeobox protein Meis1 1 0 EGGS(0.008)KS(0.91)DS(0.08)EDIT(0.001)R 167.92 1.69E-05 156560000 4879.7 4228.4 4562.1 4340.3 4289 4258.6 4717.2 4504.8 4841.2 4867.8 TRUE FALSE FALSE 4307.708963 4358.671992 4808.740926 4517.316194 3972.609015 4177.3743 4899.143984 5017.608223 4641.643687 4838.846109 0.890234751 0.900766814 0.993778437 0.933552358 0.820982715 0.863299681 1.012461209 1.036943129 0.959245982 1 12.24044734 -9.508457858 1.267766345 0.999870125 0.924936674 0.061288935 0.065428487 0.733007216 2.114578622 0.047102418 0.011462218 3.10E-10 9.508457858 -0.074933451 TDEVPAGGSRS(ph)EAEDEDDEDYVPYVPLR ddPTM_HeLa_CUDC101_4h_R1 1 TDEVPAGGSRSEAEDEDDEDYVPYVPLR 28 1 D6RD33;D6RGI7;A0A499FJW5;Q9UJV9 D6RD33 DDX41 Probable ATP-dependent RNA helicase DDX41 1 0 T(0.002)DEVPAGGS(0.161)RS(0.837)EAEDEDDEDYVPYVPLR 110.89 1.45E-10 33058000 3231.7 2663.2 2310.4 2415.8 2630.9 2437.8 2346.6 2750.3 2617.6 2118.5 TRUE FALSE FALSE 2852.885025 2745.250035 2435.307213 2514.326766 2436.823748 2391.303027 2437.109148 3063.383035 2509.70142 2105.899068 1.354711187 1.303600005 1.156421621 1.193944574 1.157141758 1.135525944 1.157277281 1.454667549 1.191748198 1 11.04022058 -9.508443492 1.270371401 1.000538946 1.242451801 0.125767999 0.113841677 0.348548033 1.010416992 0.072354476 0.017644186 3.10E-10 9.508443492 0.241912854 S(ph)PGEPGGAAPER ddPTM_HeLa_CUDC101_4h_R1 2 SPGEPGGAAPER 12 0 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 S(1)PGEPGGAAPER;S(1)PGEPGGAAPER ; 141.37 0.0012058 299950000 1370.06 1095.89 1395.6 1110.43 1411.96 1037.19 1299.2 1316.74 1138.54 1353.17 TRUE FALSE FALSE 1209.463644 1129.653072 1471.050357 1155.718135 1307.802524 1017.407329 1349.310579 1466.632359 1091.608899 1345.121285 0.899148395 0.83981503 1.093619121 0.859192512 0.972256211 0.756368471 1.003114436 1.09033466 0.81153195 1 10.39352055 -9.508148332 1.298594193 0.999486439 0.931403558 0 0.117412015 1.109311246 3.387968778 0.065249724 0.016274557 3.10E-10 9.508148332 -0.068082881 SSQPSPTAVPASDS(ph)PPTKQEVK ddPTM_HeLa_CUDC101_4h_R1 1 SSQPSPTAVPASDSPPTKQEVK 22 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 SSQPS(0.001)PT(0.009)AVPAS(0.018)DS(0.893)PPT(0.08)KQEVK 106.36 1.40E-05 33114000 3009.8 2855.5 2789 2791.9 2628.9 2743.7 2949.2 2957 2573.4 3249.2 TRUE FALSE FALSE 2656.995807 2943.47457 2939.781776 2905.76575 2434.971285 2691.368494 3062.951632 3293.612927 2467.323363 3229.873614 0.82263151 0.911328096 0.910184771 0.899653082 0.753890578 0.833273625 0.948319346 1.019734306 0.763907093 1 11.657262 -9.508088039 1.242203544 1.000375697 0.878079407 0 0.100563258 0.498996054 1.371397896 0.051971641 0.012395568 3.10E-10 9.508088039 -0.12229629 SSEPVKETVQTTQSPT(ph)PVEK ddPTM_HeLa_CUDC101_4h_R1 2 SSEPVKETVQTTQSPTPVEK 20 1 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 0 SSEPVKETVQTT(0.005)QS(0.234)PT(0.761)PVEK;SSEPVKETVQTT(0.019)QS(0.35)PT(0.631)PVEK ; 151.04 1.93E-05 451397000 6563.6 5549.3 5689.8 5193.5 5541 5524.3 5646.9 5030.1 5461.9 5317.6 TRUE FALSE FALSE 5794.224758 5720.267355 5997.407799 5405.313378 5132.251469 5418.933182 5864.702825 5602.706252 5236.75817 5285.970679 1.096151513 1.082160251 1.134589683 1.022577253 0.970919398 1.025153848 1.109484555 1.05992004 0.990689977 1 12.36795271 -9.508076614 1.288044288 1.000369139 1.065512456 0.254812184 0.045343053 0.593322731 1.777540132 0.033306294 0.008240547 3.10E-10 9.508076614 0.065143317 KS(ph)KIS(ph)T(ph)MY(ph)Y(ph)LNQDAK ddPTM_HeLa_CUDC101_4h_R1 1 KSKISTMYYLNQDAK 15 2 B7Z739;Q8TCQ1-2 B7Z739 1-Mar 5 0 KS(1)KIS(1)T(1)MY(1)Y(1)LNQDAK 44.998 0.036565 10813000 3057.7 2742.1 3011.7 2901.9 3089.1 2968.6 2781.4 2756 3137.9 3381.9 TRUE FALSE FALSE 2699.281041 2826.580851 3174.521612 3020.252025 2861.223247 2911.978901 2888.67953 3069.7319 3008.554434 3361.784308 0.802931061 0.8407978 0.944296636 0.898407437 0.851102565 0.866200397 0.85926974 0.913125774 0.894927859 1 11.71501145 -9.507965694 1.262274968 0.999890411 0.865043351 0.156728292 0.049126619 0.260815025 0.744809407 0.030109556 0.007300629 3.10E-10 9.507965694 -0.13484706 TDYNAS(ph)VSVPDSSGPER ddPTM_HeLa_CUDC101_4h_R1 3 TDYNASVSVPDSSGPER 17 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 T(0.029)DYNAS(0.965)VS(0.007)VPDSSGPER;TDYNAS(0.985)VS(0.015)VPDSSGPER;TDYNAS(0.889)VS(0.11)VPDSSGPER ;; 232.01 2.57E-56 19281600 4438.3 4030.6 3590.47 3671.83 4491.9 3763.36 3491.2 3668.98 4025.4 4824.95 TRUE FALSE FALSE 3918.049202 4154.778009 3784.581669 3821.583098 4160.541486 3691.580178 3625.856753 4086.641853 3859.471308 4796.250983 0.816898285 0.866255336 0.789070814 0.796785471 0.867456999 0.769680359 0.755977276 0.852049208 0.804685018 1 12.22769144 -9.507763235 0.422201853 1.073688325 0.800849135 0 0.071195691 0.799353523 0.162563699 0.098533252 0.010913644 3.11E-10 9.507763235 -0.27283919 EKFPEFCSSPS(ph)PPVEVK ddPTM_HeLa_CUDC101_4h_R1 2 EKFPEFCSSPSPPVEVK 17 1 Q68E01-4;Q68E01-3;Q68E01-2;Q68E01 Q68E01-4 INTS3 Integrator complex subunit 3 1 0 EKFPEFCSS(0.001)PS(0.999)PPVEVK;EKFPEFCSS(0.009)PS(0.991)PPVEVK ; 157.01 3.43E-05 156025000 6319.5 4715 5286.7 5438.4 5709.1 5563.1 5303.2 4915.2 6111.3 4707.5 TRUE FALSE FALSE 5578.73779 4860.263561 5572.514993 5660.201459 5287.951067 5456.993136 5507.7462 5474.7265 5859.389627 4679.499581 1.192165464 1.038628913 1.190835665 1.209574093 1.130024905 1.166148867 1.176994699 1.169938453 1.252140218 1 12.19213854 -9.507758237 0.680289191 0.969087114 1.162994759 0 0.091107021 0.574352394 0.349135805 0.069843127 0.009307961 3.11E-10 9.507758237 0.193907645 ANNS(ph)QEPSPQLASSVASTR ddPTM_HeLa_CUDC101_4h_R1 1 ANNSQEPSPQLASSVASTR 19 0 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 ANNS(0.995)QEPS(0.005)PQLASSVASTR 148.52 2.15E-08 0 763.01 752.89 913.67 781.43 790.67 747.76 771.88 743.24 1021.9 1017.4 TRUE FALSE FALSE 673.5711244 776.0856485 963.0657639 813.300093 732.3438493 733.4977239 801.6516702 827.8474373 979.7768495 1011.34846 0.666012904 0.767377101 0.95225909 0.804173957 0.724126133 0.72526706 0.792656243 0.818558064 0.968782659 1 9.982064447 -9.507671167 1.248686256 1.000395122 0.770627166 0.551673577 0.07262289 0.293548777 0.817012321 0.05752858 0.013802975 3.11E-10 9.507671167 -0.229767955 KAPAGQEEPGT(ph)PPSSPLSAEQLDR ddPTM_HeLa_CUDC101_4h_R1 4 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 1 0 KAPAGQEEPGT(0.995)PPS(0.003)S(0.002)PLSAEQLDR;KAPAGQEEPGT(0.889)PPS(0.082)S(0.028)PLSAEQLDR;KAPAGQEEPGT(0.999)PPS(0.001)SPLSAEQLDR;KAPAGQEEPGT(0.999)PPS(0.001)SPLSAEQLDR ;;; 116.72 1.64E-06 244187000 7542.1 7442.2 7292.39 7162.43 8063.4 7386 6411.04 5704.28 8999.5 8247 TRUE FALSE FALSE 6658.026471 7671.485361 7686.638662 7454.544854 7468.579047 7245.124356 6658.31596 6353.632178 8628.536801 8197.946477 0.812157836 0.935781343 0.937629769 0.909318556 0.911030472 0.883773074 0.812193148 0.775027282 1.052524169 1 13.00104686 -9.507644308 1.212500639 1.001163796 0.870041584 0.531969019 0.056160846 0.388574562 1.007762608 0.043022869 0.010017406 3.11E-10 9.507644308 -0.131122212 EDGVLGSRS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 EDGVLGSRSPR 11 1 E7EUR8;A0A1B0GVL4;P78312-4;P78312-6;P78312-2;P78312-5;P78312;D6RFZ4;P78312-3 E7EUR8 FAM193A Protein FAM193A 1 0 EDGVLGS(0.093)RS(0.907)PR 95.183 0.010378 9233700 3952.3 3903.4 2939 3898.6 3621.5 3997.2 3110.8 3896.7 3357.2 4044.4 TRUE FALSE FALSE 3489.017385 4023.659127 3097.89123 4057.601759 3354.34916 3920.96007 3230.784598 4340.284577 3218.814795 4020.343729 0.867840568 1.000824655 0.770553823 1.009267374 0.834343874 0.97527981 0.803609048 1.079580471 0.80063174 1 11.97310314 -9.507487946 1.221280584 1.00064543 0.908746495 0 0.112969907 0.764692277 2.018137162 0.059484134 0.013956607 3.11E-10 9.507487946 -0.091898935 SPS(ph)PISISSSETSSIMQK ddPTM_HeLa_CUDC101_4h_R1 2 SPSPISISSSETSSIMQK 18 0 Q5VT06 Q5VT06 CEP350 Centrosome-associated protein 350 1 0 S(0.087)PS(0.806)PIS(0.107)ISSSETSSIMQK;S(0.047)PS(0.941)PIS(0.012)ISSSETSSIMQK ; 99.915 0.0022527 19988200 2491.1 2045.93 1904.82 2053.11 2314.2 2313 2028.57 1791.29 2475.84 1992.23 TRUE FALSE FALSE 2199.097034 2108.962678 2007.800331 2136.8447 2143.486077 2268.883379 2106.812624 1995.203213 2373.784827 1980.380127 1.110441881 1.064928217 1.013845929 1.079007343 1.08236093 1.145680745 1.06384254 1.00748497 1.198651105 1 10.95156166 -9.50668408 1.236305946 0.9997038 1.076088601 0 0.072770488 0.442465679 1.202944769 0.028715796 0.006831024 3.11E-10 9.50668408 0.076384801 SLSKS(ph)DSDLLTCSPTEDATMGSR ddPTM_HeLa_CUDC101_4h_R1 3 SLSKSDSDLLTCSPTEDATMGSR 23 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.02)LS(0.069)KS(0.881)DS(0.03)DLLTCSPTEDATMGSR;S(0.077)LS(0.248)KS(0.657)DS(0.013)DLLT(0.005)CSPTEDATMGSR;S(0.137)LS(0.123)KS(0.414)DS(0.099)DLLT(0.218)CS(0.009)PTEDATMGSR ;; 98.76 5.44E-05 189315000 7976.3 6777.5 5869.1 6798 8226.9 7907.8 7601.2 8928.8 6873.3 3135.91 TRUE FALSE FALSE 7041.330205 6986.306742 6186.401299 7075.251823 7620.017977 7756.97189 7894.38083 9945.218501 6589.979665 3117.257468 2.258822147 2.241170905 1.984565395 2.269704026 2.444462177 2.488396281 2.532476355 3.190374425 2.114031238 1 11.6060616 -9.506531841 0.213882169 6.82E-18 2.859663719 0.434605384 0.391484469 2.220342029 0.137629759 1.767823559 0.319275818 3.12E-10 9.506531841 2.859663719 TEMDKS(ph)PFNSPS(ph)PQDSPR ddPTM_HeLa_CUDC101_4h_R1 1 TEMDKSPFNSPSPQDSPR 18 1 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 2 0 T(0.411)EMDKS(0.988)PFNS(0.084)PS(0.416)PQDS(0.102)PR 67.895 0.015106 31917000 4791.1 4310 4321.1 4484.1 5067 4358 4581 4451 4760.1 5221.8 TRUE FALSE FALSE 4229.494521 4442.785991 4554.711737 4666.98098 4693.217505 4274.878411 4757.690705 4957.683848 4563.886663 5190.740501 0.81481525 0.85590601 0.877468588 0.89909734 0.904151826 0.82355849 0.916572636 0.955101463 0.879236144 1 12.34172465 -9.506407974 1.266653257 0.999737825 0.873156061 0 0.054374662 0.283786437 0.817616618 0.030761822 0.007503397 3.12E-10 9.506407974 -0.126581765 ALSQTVPSSGTNGVSLPADCTGAVPAAS(ph)PDTAAWR ddPTM_HeLa_CUDC101_4h_R1 1 ALSQTVPSSGTNGVSLPADCTGAVPAASPDTAAWR 35 0 B7Z7F3;Q9H6Z4-3;Q9H6Z4-2;Q9H6Z4;K7EN31 B7Z7F3 RANBP3 Ran-binding protein 3 1 0 ALSQTVPSSGTNGVS(0.004)LPADCT(0.079)GAVPAAS(0.836)PDT(0.082)AAWR 129.81 1.55E-19 16482000 3329.9 2656.7 2301.1 2279.7 2913.6 2763.2 2514.8 2400.7 2632.1 2091.5 TRUE FALSE FALSE 2939.57417 2738.549778 2425.504426 2372.67602 2698.669533 2710.496564 2611.796678 2673.985984 2523.603724 2079.059665 1.413896012 1.317205958 1.166635315 1.141225555 1.298024091 1.303712736 1.256239406 1.286151633 1.21381977 1 11.02171545 -9.505823542 1.257292326 1.000119312 1.284149829 0.215010957 0.096830738 0.25156259 0.712255653 0.061020381 0.014786427 3.12E-10 9.505823542 0.284030517 SVSEINS(ph)DDELSGK ddPTM_HeLa_CUDC101_4h_R1 1 SVSEINSDDELSGK 14 0 F8WF45;A0A2R8Y7M0;P82094;P82094-2 F8WF45 TMF1 TATA element modulatory factor 1 0 SVS(0.058)EINS(0.942)DDELSGK 293.77 1.21E-122 238710000 6080.4 5481.8 4707.6 4578.8 5624.5 4860.7 5474 4617.3 5377.6 4901.9 TRUE FALSE FALSE 5367.664729 5650.68776 4962.107096 4765.543255 5209.591841 4767.990246 5685.134014 5142.914768 5155.933052 4872.743281 1.101569367 1.159652261 1.018339529 0.978000067 1.069129142 0.978502246 1.166721431 1.055445459 1.058117113 1 12.2505185 -9.504806443 1.304341575 1.00064604 1.069186881 0.018831473 0.064068885 0.70002706 2.162985059 0.041431145 0.010433561 3.13E-10 9.504806443 0.068540842 KGSDDAPYS(ph)PTAR ddPTM_HeLa_CUDC101_4h_R1 1 KGSDDAPYSPTAR 13 1 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 KGSDDAPYS(0.994)PT(0.006)AR 96.247 0.024883 5772600 1767.3 1888.7 1970 1673.5 2075.2 1998.9 1526.3 1242.4 1934.5 2245.2 TRUE FALSE FALSE 1560.139773 1946.888608 2076.504159 1741.752563 1922.11663 1960.774313 1585.169902 1383.829794 1854.759091 2231.845451 0.699035757 0.872322323 0.930397828 0.780409129 0.861222998 0.878543948 0.710250749 0.62003836 0.831042799 1 11.12402141 -9.504447812 1.21528508 1.001571145 0.791427667 0.102160907 0.104132989 0.399446172 1.043127997 0.070818259 0.016613044 3.13E-10 9.504447812 -0.210143478 EGMNPSYDEYADS(ph)DEDQHDAYLER ddPTM_HeLa_CUDC101_4h_R1 18 EGMNPSYDEYADSDEDQHDAYLER 24 0 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEY(0.001)ADS(0.999)DEDQHDAYLER;EGMNPSY(0.001)DEY(0.001)ADS(0.998)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEY(0.018)ADS(0.981)DEDQHDAYLER;EGMNPS(0.003)Y(0.012)DEY(0.044)ADS(0.941)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPS(0.001)Y(0.007)DEY(0.068)ADS(0.925)DEDQHDAYLER;EGMNPSY(0.001)DEY(0.018)ADS(0.98)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPS(0.005)Y(0.064)DEY(0.039)ADS(0.892)DEDQHDAYLER;EGMNPS(0.001)Y(0.001)DEY(0.004)ADS(0.994)DEDQHDAYLER;EGMNPSYDEY(0.002)ADS(0.998)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEY(0.001)ADS(0.998)DEDQHDAYLER;EGMNPSY(0.002)DEY(0.03)ADS(0.968)DEDQHDAYLER ;;;;;;;;;;;;;;;;; 146.8 5.20E-09 7464961000 46631.19 46621.37 39529.56 41803 45873.76 42445.54 40711.16 39544.95 48834.52 47371.44 TRUE FALSE FALSE 41165.1526 48057.71915 41666.64758 43507.90703 42489.74412 41635.96204 42281.40308 44046.58726 46821.54042 47089.67257 0.874186427 1.020557514 0.884836214 0.923937345 0.902315557 0.884184573 0.89789121 0.9353768 0.994305924 1 15.52312307 -9.504097556 1.147842748 1.001943633 0.91149106 0.400989575 0.039707884 0.407441111 0.926383314 0.030445964 0.006737521 3.13E-10 9.504097556 -0.090452573 S(ph)CETLEGPQTVDTWPR ddPTM_HeLa_CUDC101_4h_R1 1 SCETLEGPQTVDTWPR 16 0 O94885;A0A087WW74 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 0 S(0.975)CET(0.025)LEGPQTVDTWPR 149.73 0.00018658 2869300 710.67 430.16 462.81 466.23 589.56 567.19 419.11 412.65 465.58 270.92 TRUE FALSE FALSE 627.3663399 443.4127197 487.8309085 485.2448746 546.0693334 556.3717958 435.2752131 459.624408 446.3885953 269.3085558 2.329544778 1.646485825 1.811420016 1.801817522 2.027671686 2.065926922 1.616269531 1.706683275 1.657535885 1 8.073116254 -9.503963802 1.235165088 0.996893763 1.917886733 0.269353509 0.285820574 0.219862716 0.597095597 0.171742526 0.040993456 3.13E-10 9.503963802 0.920992969 GSISTPNS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 3 GSISTPNSPVK 11 0 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 GSIST(0.04)PNS(0.96)PVK;GSIS(0.011)T(0.112)PNS(0.877)PVK;GSIS(0.007)T(0.17)PNS(0.823)PVK ;; 140.33 0.0013959 40673000 10748.9 8717.8 6897.9 9010.6 9111.7 8117.4 8374.1 7625.6 7912.6 6895.8 TRUE FALSE FALSE 9488.930236 8986.385085 7270.821339 9378.091215 8439.548044 7962.57412 8697.091842 8493.66748 7586.439279 6854.783475 1.384278624 1.310965564 1.060693072 1.368109036 1.231191047 1.161608408 1.268762445 1.239086181 1.10673653 1 12.74289538 -9.503962551 1.25527682 1.000137206 1.26427182 0.397073127 0.094976522 0.292305372 0.82506379 0.065835503 0.015974239 3.13E-10 9.503962551 0.264134614 ASAETVDPASLWEY ddPTM_HeLa_CUDC101_4h_R1 2 ASAETVDPASLWEY 14 0 Q16658 Q16658 FSCN1 Fascin 0 0 ; ; 111.61 0.017644 11858700 7968.2 7280 5982.1 6499.8 7747.8 7018.1 6605.5 6321.1 7460.3 6984.9 FALSE FALSE TRUE 7034.179675 7504.288171 6305.510421 6764.889939 7176.26023 6884.241435 6860.276348 7040.668473 7152.783276 6943.353504 1.013081024 1.080787283 0.908136165 0.974297209 1.033543838 0.991486525 0.98803501 1.014015557 1.030162626 1 12.76141691 -6.776431727 24.99993906 1.011945489 0.987086588 0.199446282 0.038099204 456.2349935 760776.2769 0.006036137 0.007950198 1.67E-07 6.776431727 -0.024858901 QEMQEVQSS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 QEMQEVQSSR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 QEMQEVQS(0.035)S(0.965)R;QEMQEVQS(0.077)S(0.923)R ; 179.59 4.02E-08 38391000 6978.8 7161.6 6833.2 6072.2 8111.3 6851.2 6353.4 6018.4 7592.5 8207.9 TRUE FALSE FALSE 6160.755643 7382.240407 7202.623461 6319.850562 7512.945559 6720.524775 6598.452766 6703.510329 7279.533936 8159.079046 0.755079784 0.904788441 0.882774075 0.774578911 0.920808037 0.823686685 0.808725192 0.821601346 0.892200443 1 12.9941906 -9.503374623 1.219767673 1.001070239 0.830312955 0.289785734 0.059924567 0.268018625 0.706462412 0.038638805 0.009113992 3.14E-10 9.503374623 -0.170757283 EIYY(ph)IT(ph)EDMS(ph)IR ddPTM_HeLa_CUDC101_4h_R1 1 EIYYITEDMSIR 12 0 Q2LD37-4;Q2LD37;Q2LD37-5;Q2LD37-2;Q2LD37-6;Q2LD37-7 Q2LD37-4 KIAA1109 Uncharacterized protein KIAA1109 3 0 EIY(0.013)Y(0.987)IT(1)EDMS(1)IR 63.602 0.025472 22741000 941.96 660.72 621.19 565.72 774.71 566.65 569.51 682.61 846.53 357.34 TRUE FALSE FALSE 831.5448767 681.0760001 654.7734104 588.7925069 717.5611867 555.8420954 591.4761915 760.3155632 811.6356751 355.2145258 2.340965294 1.917365284 1.843318228 1.657568776 2.020078388 1.564806772 1.665123886 2.140440517 2.284916906 1 8.472546769 -9.503371357 1.252398513 1.00012333 1.923045088 0 0.451827516 0.230502631 0.647220927 0.181206323 0.043906557 3.14E-10 9.503371357 0.922921758 ASAISIK(ac)LGSSKPK ddPTM_HeLa_CUDC101_4h_R1 2 ASAISIKLGSSKPK 14 2 Q8WW12;Q8WW12-2 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 0 1 ; ASAISIK(1)LGSSKPK;ASAISIK(1)LGSSKPK 164.66 8.85E-05 13913700 5439.4 5254.2 5356.6 5465.6 5612.6 5060.5 4972.9 5877.4 4677.5 5191.1 FALSE TRUE FALSE 4801.801778 5416.075674 5646.193999 5688.510792 5198.56968 4963.979394 5164.706419 6546.459459 4484.69147 5160.223106 0.930541505 1.049581687 1.094176334 1.102376908 1.007431185 0.961969917 1.000868821 1.268638841 0.869088677 1 12.33321773 -7.160002547 5.975756678 0.967321127 1.063213089 0.322485966 0.086067801 0.258704384 12.83850804 0.013437239 0.016497803 6.92E-08 7.160002547 0.095891962 SAVAVYSYSCEGPEEES(ph)EDDSHLEGR ddPTM_HeLa_CUDC101_4h_R1 2 SAVAVYSYSCEGPEEESEDDSHLEGR 26 0 A0A1B0GU26;A0A1B0GTI3;A0A1B0GTY1;A0A1B0GUC3;A0A1B0GV98;A0A1B0GTC5;A0A1B0GTC3;A0A1B0GVH5;Q9C0B1 A0A1B0GU26 FTO Alpha-ketoglutarate-dependent dioxygenase FTO 1 0 SAVAVYSYSCEGPEEES(0.978)EDDS(0.022)HLEGR;SAVAVYSYSCEGPEEES(0.975)EDDS(0.025)HLEGR ; 176.38 7.33E-14 50334000 5882 4462.5 4755.3 4475.5 4513.6 4725.1 4112.4 5732.9 6107.5 4098.3 TRUE FALSE FALSE 5192.520877 4599.984336 5012.385902 4658.030235 4180.64072 4634.97659 4271.016646 6385.510163 5855.746265 4073.923129 1.274575075 1.129128899 1.230358488 1.143377056 1.026195288 1.137718225 1.048379292 1.567410567 1.437372793 1 11.99220304 -9.501039811 1.232002656 0.999386992 1.190067644 0 0.197512741 0.600975937 1.624066162 0.096957974 0.023190093 3.15E-10 9.501039811 0.190680652 NLAANDLS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 2 NLAANDLSPSR 11 0 Q96CB9-4;Q96CB9 Q96CB9-4 NSUN4 5-methylcytosine rRNA methyltransferase NSUN4 1 0 NLAANDLS(0.597)PS(0.403)R;NLAANDLS(0.865)PS(0.135)R ; 111.66 0.006516 19850500 4875.8 4062.7 3825.1 3963.3 4242.6 4214.9 3601.4 3660.3 4181.5 3623.6 TRUE FALSE FALSE 4304.266115 4187.866972 4031.896476 4124.940505 3929.63185 4134.507805 3740.307204 4076.973757 4009.1368 3602.046666 1.194950125 1.162635401 1.119334881 1.145165759 1.090944181 1.147821833 1.038383883 1.131849233 1.113016341 1 11.81460116 -9.501002824 1.261935997 1.000344825 1.134174544 0.103686167 0.052392595 0.269352316 0.770803938 0.030741109 0.007533976 3.15E-10 9.501002824 0.133829719 APSPLGPT(ph)RDPVATFLETCR ddPTM_HeLa_CUDC101_4h_R1 1 APSPLGPTRDPVATFLETCR 20 1 I3L2L9;E7EVV8;Q0VG06-3;Q0VG06 I3L2L9 C17orf70;FAAP100 Fanconi anemia-associated protein of 100 kDa 1 0 APS(0.12)PLGPT(0.704)RDPVAT(0.173)FLET(0.002)CR 66.152 0.016095 26271000 591.14 494.85 662.29 557.33 588.36 758.12 633.17 414.35 650.27 738.53 TRUE FALSE FALSE 521.8474653 510.095742 698.0954007 580.0603264 544.957855 743.6601241 657.591579 461.5179291 623.4655954 734.1371907 0.710830989 0.694823459 0.95090592 0.790125243 0.74231065 1.012971599 0.895733914 0.62865352 0.849249436 1 9.519905879 -9.499660665 1.267404848 0.999217167 0.800980135 0.090978457 0.122069313 0.466636221 1.349847463 0.078939383 0.01947162 3.16E-10 9.499660665 -0.198237032 RVVLGDGVQLPPGDYS(ph)TTPGGTLFSTTPGGTR ddPTM_HeLa_CUDC101_4h_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 RVVLGDGVQLPPGDY(0.065)S(0.302)T(0.302)T(0.302)PGGT(0.017)LFS(0.004)T(0.004)T(0.004)PGGT(0.002)R 73.616 4.79E-06 22335000 466.91 530.95 671.83 588.26 610.47 555.5 485.77 593.53 592.37 877.94 TRUE FALSE FALSE 412.1795176 547.3079402 708.151162 612.2517855 565.4368443 544.904763 504.5063116 661.0950561 567.9522579 872.7179738 0.472294063 0.627130364 0.811431852 0.701545979 0.647903288 0.624376694 0.578086308 0.757512823 0.650785563 1 9.7693717 -9.499585401 1.240195733 1.000458093 0.634889177 0 0.138181902 0.235310522 0.646441263 0.072888032 0.017591324 3.17E-10 9.499585401 -0.365568916 APS(ph)PPEAALQPAPTEPR ddPTM_HeLa_CUDC101_4h_R1 3 APSPPEAALQPAPTEPR 17 0 Q9NVR5-2;Q9NVR5 Q9NVR5-2 DNAAF2 Protein kintoun 1 0 APS(1)PPEAALQPAPTEPR;APS(1)PPEAALQPAPTEPR;APS(1)PPEAALQPAPTEPR ;; 115.66 0.00056127 24086000 1144.48 1230.63 1213.94 1189.79 1237.84 1155.2 1136.86 1168.41 1351.5 1563.35 TRUE FALSE FALSE 1010.325789 1268.544252 1279.569268 1238.314779 1146.527009 1133.166485 1180.709071 1301.417072 1295.790598 1554.051125 0.650123907 0.816282188 0.82337656 0.796830142 0.737766597 0.729169373 0.759762052 0.837435172 0.833814652 1 10.60181825 -9.499566218 1.226305254 1.000969506 0.757257498 0.310464452 0.072540728 0.215912845 0.577383954 0.044417725 0.01059841 3.17E-10 9.499566218 -0.243712008 GNS(ph)PPSSGEACR ddPTM_HeLa_CUDC101_4h_R1 1 GNSPPSSGEACR 12 0 P41227;P41227-2 P41227 NAA10 N-alpha-acetyltransferase 10 1 0 GNS(0.465)PPS(0.267)S(0.267)GEACR 92.151 0.018689 89690000 2370.1 2583.6 2723.9 3343.8 2819 2960.5 2372 2646.5 3022.7 4071.3 TRUE FALSE FALSE 2092.280471 2663.197654 2871.162273 3480.174617 2611.047986 2904.033395 2463.488835 2947.766862 2898.103027 4047.083727 0.516984726 0.658053511 0.709439801 0.859921576 0.645167771 0.717561976 0.608707158 0.728368144 0.716096632 1 11.98266698 -9.498958122 1.244228604 1.000099038 0.665936466 0.105842542 0.12000605 0.239087429 0.662093048 0.067745522 0.016420301 3.17E-10 9.498958122 -0.334162572 PMS(ph)SEELPLASSWR ddPTM_HeLa_CUDC101_4h_R1 1 PMSSEELPLASSWR 14 0 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 PMS(0.929)S(0.071)EELPLASSWR 85.287 0.019712 3057100 1289.8 1081.1 1521.1 1363.4 1365 1152.1 1174.8 1048.5 1434.4 1509.3 TRUE FALSE FALSE 1138.611599 1114.40741 1603.335267 1419.005345 1264.306669 1130.125612 1220.11243 1167.857002 1375.273425 1500.322616 0.758911175 0.742778518 1.068660333 0.945800143 0.842689869 0.753255066 0.813233378 0.778403917 0.916651799 1 10.55105704 -9.498460781 1.250931066 0.999818885 0.833383612 0.175284474 0.098719149 0.50761864 1.424116717 0.071746002 0.01749836 3.17E-10 9.498460781 -0.166435273 LEPVS(ph)PPS(ph)PPHTDPELELVPPR ddPTM_HeLa_CUDC101_4h_R1 3 LEPVSPPSPPHTDPELELVPPR 22 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;C9JQE8;C9J330;H7C1Y3;H0YGK8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 2 0 LEPVS(1)PPS(0.999)PPHT(0.001)DPELELVPPR;LEPVS(1)PPS(1)PPHTDPELELVPPR;LEPVS(1)PPS(1)PPHTDPELELVPPR ;; 113.3 3.45E-05 145001100 8731.7 8567.3 7673.3 6890.7 8643.6 8339.1 8348.3 8072.2 9218.8 9200.4 TRUE FALSE FALSE 7708.183362 8831.248358 8088.141808 7171.73253 8005.978848 8180.045561 8670.296727 8991.106619 8838.797162 9145.675612 0.842822738 0.965620117 0.884367886 0.78416651 0.875384082 0.894416761 0.948021458 0.983099226 0.966445513 1 13.15887403 -9.497960419 1.204057365 1.0008839 0.890344793 0.256865574 0.056802085 0.46473836 1.19007912 0.043055207 0.010108834 3.18E-10 9.497960419 -0.110539107 AEDGATPS(ph)PSNETPKK ddPTM_HeLa_CUDC101_4h_R1 1 AEDGATPSPSNETPKK 16 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGAT(0.01)PS(0.963)PS(0.026)NET(0.001)PKK 65.765 0.02271 25201000 5147.6 5142.6 4915.7 4821 5188.6 5063.2 4158.8 4200.2 5662.8 5549 TRUE FALSE FALSE 4544.206131 5301.037411 5181.457611 5017.621218 4805.847315 4966.627896 4319.206309 4678.33379 5429.376987 5515.994301 0.823823573 0.961030255 0.939351516 0.909649456 0.871256759 0.900404827 0.783033135 0.848139707 0.984297062 1 12.42940525 -9.497908259 1.168951464 1.001930825 0.876109009 0.443164987 0.050295153 0.395756078 0.943408464 0.041292142 0.009405368 3.18E-10 9.497908259 -0.125821816 LISDS(ph)VERDR ddPTM_HeLa_CUDC101_4h_R1 2 LISDSVERDR 10 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 LIS(0.04)DS(0.96)VERDR;LIS(0.002)DS(0.998)VERDR ; 89.44 0.016477 17261100 4052.4 3629.9 3869.6 3811.1 4247.9 3696.6 3513 3569.1 3815.1 4310.9 TRUE FALSE FALSE 3577.383815 3741.732917 4078.802281 3966.533131 3934.54088 3626.093514 3648.497587 3975.391917 3657.839963 4285.258575 0.834811658 0.87316386 0.951821742 0.925622821 0.918157169 0.846178463 0.851406636 0.927690091 0.853586755 1 12.06516654 -9.497556056 1.239220944 1.000106037 0.885517426 0 0.05843727 0.305866274 0.839378217 0.029657485 0.007174968 3.18E-10 9.497556056 -0.114588611 AIS(ph)TGSLASSTLNK ddPTM_HeLa_CUDC101_4h_R1 1 AISTGSLASSTLNK 14 0 Q12923-3;Q12923;Q12923-4 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 0 AIS(0.941)T(0.059)GSLASSTLNK 132.23 0.00076587 25966000 1841.3 1915 1258.1 1820.7 2230.8 1620.3 1833.5 1561.2 1750.4 2063.3 TRUE FALSE FALSE 1625.465605 1973.99888 1326.116692 1894.956016 2066.238328 1589.395477 1904.218709 1738.920697 1678.247771 2051.0274 0.792512867 0.962443934 0.646562153 0.923905754 1.007416248 0.774926496 0.928421877 0.847829092 0.818247368 1 11.00213105 -9.49580238 1.219028595 1.000641038 0.855477666 0 0.113716247 0.554497796 1.464070923 0.067673581 0.016145828 3.19E-10 9.49580238 -0.145163373 KTSAVSS(ph)PLLDQQR ddPTM_HeLa_CUDC101_4h_R1 2 KTSAVSSPLLDQQR 14 1 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 KTSAVS(0.218)S(0.781)PLLDQQR;KTS(0.006)AVS(0.229)S(0.765)PLLDQQR ; 207.85 2.59E-23 20495000 3678.7 3896.3 2999.9 3401.4 3825.7 3565 3372.8 2640.4 3383.6 3910.2 TRUE FALSE FALSE 3247.488363 4016.340385 3162.083668 3540.123794 3543.485733 3497.003565 3502.890026 2940.972463 3244.126576 3886.941956 0.835486714 1.033290548 0.813514507 0.910773516 0.911638448 0.899679904 0.901194323 0.75662886 0.834621822 1 11.92441985 -9.495715919 1.120355852 1.003047605 0.882833089 0 0.085815883 0.529834504 1.139657657 0.051915562 0.01135712 3.19E-10 9.495715919 -0.120214516 TVAISDAAQLPHDYCTT(ph)PGGT(ph)LFSTTPGGTR ddPTM_HeLa_CUDC101_4h_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 TVAISDAAQLPHDY(0.002)CT(0.397)T(0.738)PGGT(0.396)LFS(0.167)T(0.152)T(0.121)PGGT(0.027)R 102.55 8.60E-10 324590000 3510.6 2588.7 2631.1 2495.5 3467.3 2530.8 2351.8 2201.3 2697 1982.3 TRUE FALSE FALSE 3099.09279 2668.454779 2773.345225 2597.277276 3211.524187 2482.529207 2442.509714 2451.887094 2585.828518 1970.509191 1.572737038 1.35419555 1.407425673 1.318074175 1.629794066 1.259841475 1.239532261 1.244291123 1.312264124 1 10.94435276 -9.495645072 1.235981219 0.999586531 1.397676215 0.134373077 0.15707954 0.285670491 0.779667919 0.09604789 0.023244913 3.19E-10 9.495645072 0.398089684 NPYLLS(ph)EEEDDDVDGDVNVEK ddPTM_HeLa_CUDC101_4h_R1 2 NPYLLSEEEDDDVDGDVNVEK 21 0 G3V5V3;O60524-4;O60524-5;O60524-3;O60524 G3V5V3 NEMF Nuclear export mediator factor NEMF 1 0 NPYLLS(1)EEEDDDVDGDVNVEK;NPY(0.002)LLS(0.998)EEEDDDVDGDVNVEK ; 133.8 3.14E-07 11521000 10832.4 11244.1 11366.4 10225.4 10435.1 11769.4 9778.8 7717.2 11446.2 12636.3 TRUE FALSE FALSE 9562.642493 11590.51739 11980.90197 10642.43601 9665.323463 11544.9183 10155.97159 8595.694854 10974.38279 12561.13873 0.761287866 0.922728237 0.953806994 0.847250894 0.769462361 0.919098066 0.808523161 0.684308568 0.873677382 1 13.61667964 -9.49550238 1.175078244 1.002282612 0.832083086 0.125010795 0.087387885 0.432591352 1.045511897 0.061097667 0.014045867 3.20E-10 9.49550238 -0.170199527 GCDS(ph)PDPDTSYVLT(ph)PHTEEK ddPTM_HeLa_CUDC101_4h_R1 1 GCDSPDPDTSYVLTPHTEEK 20 0 Q02078-3;Q02078-5;Q02078 Q02078-3 MEF2A Myocyte-specific enhancer factor 2A 2 0 GCDS(1)PDPDTSYVLT(0.992)PHT(0.008)EEK 136.77 2.61E-05 9172400 3629.2 2326.9 2466.7 2481.8 3054.2 2867.7 2281.7 3366 2386.2 1938.8 TRUE FALSE FALSE 3203.790678 2398.589031 2600.057263 2583.018531 2828.897751 2813.0034 2369.705933 3749.171834 2287.839826 1927.267931 1.662348356 1.244554009 1.349089673 1.340248799 1.467827957 1.459580868 1.229567459 1.945329849 1.187089656 1 10.91234144 -9.495259667 1.197005016 0.995901188 1.463731718 0.324183385 0.20760711 0.3632347 0.918130244 0.141931241 0.03326671 3.20E-10 9.495259667 0.467830529 RNSS(ph)S(ph)S(ph)SS(ph)PSERPR ddPTM_HeLa_CUDC101_4h_R1 1 RNSSSSSSPSERPR 14 2 B7WPE2;Q32P44;G3V1D0;H0Y3M3;Q32P44-2 B7WPE2 EML3 Echinoderm microtubule-associated protein-like 3 4 0 RNS(0.016)S(0.983)S(0.674)S(0.674)S(0.674)S(0.576)PS(0.405)ERPR 50.806 0.0033261 0 4035.5 2817.2 2461.8 2052.8 3843.9 3657.9 2931 2605.4 3528.1 1986.2 TRUE FALSE FALSE 3562.464807 2903.994593 2594.892355 2136.522057 3560.343155 3588.131652 3044.049652 2901.988205 3382.670225 1974.385994 1.804340599 1.470834275 1.314278141 1.082119739 1.803266011 1.817340511 1.541770282 1.469818067 1.713277057 1 10.94718835 -9.495085958 1.216076905 0.997253655 1.561027267 0 0.310304683 0.367341421 0.964572273 0.173906134 0.041435843 3.20E-10 9.495085958 0.563773611 MLEDS(ph)QRT(ph)EEENGK ddPTM_HeLa_CUDC101_4h_R1 1 MLEDSQRTEEENGK 14 1 Q6P996-4 Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 2 0 MLEDS(1)QRT(1)EEENGK 77.192 0.0028155 0 735.07 652.93 754.57 530.82 540.97 736.93 717.6 709.72 793.2 733.17 TRUE FALSE FALSE 648.9062089 673.0459994 795.3643366 552.469134 501.0637209 722.8742881 745.2780724 790.511656 760.5039603 728.8090722 0.890365164 0.923487406 1.091320576 0.758043711 0.687510268 0.991856874 1.022597139 1.084662206 1.043488602 1 9.509397108 -9.494967521 1.211182313 1.000448148 0.923448099 0.067999425 0.124522136 1.430007907 3.718937231 0.092329998 0.021912935 3.20E-10 9.494967521 -0.077000049 ASS(ph)LNFLNK ddPTM_HeLa_CUDC101_4h_R1 1 ASSLNFLNK 9 0 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 AS(0.019)S(0.981)LNFLNK 173.04 2.39E-07 621920000 8690.5 7392.5 6640.4 6768.8 7240 7018.5 7314.2 6992.1 7806.7 6517.2 TRUE FALSE FALSE 7671.812764 7620.254163 6999.40011 7044.860921 6705.919624 6884.633806 7596.311144 7788.052401 7484.904522 6478.435405 1.18420765 1.176249154 1.080415204 1.087432456 1.035114068 1.062700077 1.172553351 1.202150197 1.155356819 1 12.66142972 -9.494925337 1.255082933 1.000358677 1.127510676 0 0.072104038 0.391786618 1.109375431 0.042269219 0.010401092 3.20E-10 9.494925337 0.127151999 SS(ph)TETCYSAIPK ddPTM_HeLa_CUDC101_4h_R1 2 SSTETCYSAIPK 12 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 0 S(0.116)S(0.884)TETCYSAIPK;S(0.351)S(0.648)T(0.001)ETCYSAIPK ; 223.31 2.29E-32 27392000 4361 3692.9 3479.7 3578.6 3311.6 3728.1 3615.1 3657.6 3916.4 3386.7 TRUE FALSE FALSE 3849.810191 3806.673872 3667.823108 3724.550776 3067.309866 3656.992704 3754.535618 4073.966399 3754.964334 3366.555758 1.14354565 1.130732459 1.089488299 1.106338657 0.911112153 1.086271242 1.115245339 1.210128895 1.115372685 1 11.71705764 -9.49488304 1.256212881 1.000302381 1.099342863 0 0.079641957 0.607133333 1.722853028 0.051034523 0.012570159 3.20E-10 9.49488304 0.099040482 EVMLLQLTVIKVMT(ph)TR ddPTM_HeLa_CUDC101_4h_R1 1 EVMLLQLTVIKVMTTR 16 1 H0YM78;H3BNS6;H0YMQ0;H0YMK4;H0YKU3;Q8NG48-3;Q8NG48-2;Q8NG48 H0YM78 LINS Protein Lines homolog 1 0 EVMLLQLT(0.002)VIKVMT(0.499)T(0.499)R 54.004 0.0029782 0 769.51 876.89 950.66 687.91 877.36 856.53 719.86 730.95 1082.5 1100.9 TRUE FALSE FALSE 679.3092043 903.9059415 1002.055555 715.9659432 812.6389007 840.1931173 747.6252413 814.1583934 1037.878892 1094.351798 0.62074116 0.825973826 0.915661268 0.654237462 0.742575561 0.767754134 0.683167189 0.743964048 0.948396022 1 10.09586088 -9.494740412 1.200387466 1.002126657 0.734549653 0.55673483 0.081440659 0.282023183 0.717880062 0.063073748 0.014838594 3.20E-10 9.494740412 -0.267577003 S(ph)PLDPDSGLLSCTLPNGFGGQSGPEGER ddPTM_HeLa_CUDC101_4h_R1 2 SPLDPDSGLLSCTLPNGFGGQSGPEGER 28 0 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 0 S(0.923)PLDPDS(0.077)GLLSCTLPNGFGGQSGPEGER;S(0.874)PLDPDS(0.126)GLLSCTLPNGFGGQSGPEGER ; 148.63 3.00E-16 10419100 3868.8 3096.6 2817.5 2729.6 3196.8 3223.5 2890 2313.6 3255.5 2269.4 TRUE FALSE FALSE 3415.305129 3192.002576 2969.822572 2840.924886 2960.978433 3162.017108 3001.468268 2576.970872 3121.306912 2255.901508 1.513942482 1.414956533 1.316468189 1.259330195 1.312547743 1.401664522 1.330496149 1.142324194 1.383618434 1 11.13948837 -9.494610592 1.247799882 1.000539856 1.356308997 0 0.149669345 0.245874787 0.686732652 0.074069837 0.018128575 3.20E-10 9.494610592 0.355769141 ASEIGEK(ac)YR ddPTM_HeLa_CUDC101_4h_R1 2 ASEIGEKYR 9 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 0 1 ; ASEIGEK(1)YR;ASEIGEK(1)YR 123.35 0.0019025 19407700 3736.3 3429.8 3543.8 4445.6 4173.1 4784.5 4016.7 4319.7 2692.6 2700.1 FALSE TRUE FALSE 3298.336578 3535.468073 3735.388547 4626.910784 3865.258727 4693.243634 4171.625465 4811.437187 2581.609888 2684.039685 1.228870272 1.317219001 1.391703919 1.723860794 1.440090006 1.748574606 1.554233899 1.792610301 0.961837451 1 11.39019029 -6.846403436 0.414601467 1.007056139 1.755135794 0.865745446 0.103089778 0.25587933 0.10487117 0.042607988 0.073115587 1.42E-07 6.846403436 0.748079654 ASEK(ac)ILQVR ddPTM_HeLa_CUDC101_4h_R1 2 ASEKILQVR 9 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 0 1 ; ASEK(1)ILQVR;ASEK(1)ILQVR 117.53 0.0018433 6062700 2917.9 2587.6 1700.93 2279.6 2549.9 2198.7 2141.11 2372.3 1799.48 1210.64 FALSE TRUE FALSE 2575.868185 2667.320889 1792.887421 2372.571941 2361.798957 2156.763461 2223.69333 2642.353043 1725.304673 1203.439059 2.140422621 2.21641542 1.489803249 1.971493216 1.962541384 1.792166744 1.847782247 2.195668341 1.433645235 1 10.23294737 -9.315986721 0.957685415 0.979743612 1.948841061 0.579062957 0.240510696 0.231299371 0.367529738 0.158785021 0.038876021 4.83E-10 9.315986721 0.969097449 SAPGGGSK(ac)VPQK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 SAPGGGSKVPQKK 13 2 P06748;P06748-2;P06748-3;E5RI98 P06748 NPM1 Nucleophosmin 0 2 ; SAPGGGSK(1)VPQK(1)K;SAPGGGSK(1)VPQK(1)K 168.82 1.46E-06 11690300 4815.2 5220.7 6503.7 6807.7 7549.4 7161.8 7469.5 8315 3210 3253.1 FALSE TRUE FALSE 4250.769555 5381.543579 6855.309695 7085.347431 6992.495803 7025.200597 7757.601117 9261.54599 3077.682441 3233.750417 1.314501433 1.664180251 2.119925415 2.191061931 2.162348636 2.172462216 2.398948626 2.864026222 0.95173778 1 11.65899262 -6.64388694 0.450700419 0.992579828 2.655020009 0.925938862 0.162363475 0.200623028 0.088518418 0.06391678 0.13182896 2.27E-07 6.64388694 1.662440181 up LSPSPTS(ph)QR ddPTM_HeLa_CUDC101_4h_R1 1 LSPSPTSQR 9 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LS(0.002)PS(0.021)PT(0.246)S(0.731)QR 126.03 0.0042469 40499000 2532.2 1990 2100.7 2110.4 2161.7 2120.6 2095.6 1803.4 2080.6 1909.7 TRUE FALSE FALSE 2235.379355 2051.309541 2214.270196 2196.471234 2002.235698 2080.153088 2176.427994 2008.691766 1994.836787 1898.341019 1.177543619 1.080580107 1.166423827 1.157047765 1.054729196 1.095774187 1.146489472 1.058130097 1.05083163 1 10.89052347 -9.494543291 1.225361205 0.99964965 1.123623404 0.379612741 0.044861583 0.295693377 0.790896194 0.030853676 0.007414803 3.20E-10 9.494543291 0.123973753 NKDSGSDTASAIIPSTTPSVDS(ph)DDESVVK ddPTM_HeLa_CUDC101_4h_R1 2 NKDSGSDTASAIIPSTTPSVDSDDESVVK 29 1 Q6WKZ4;E7EX40;Q6WKZ4-2;Q6WKZ4-3 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 0 NKDSGSDTASAIIPS(0.017)T(0.021)T(0.002)PS(0.238)VDS(0.696)DDES(0.027)VVK;NKDSGSDTASAIIPS(0.023)T(0.015)T(0.004)PS(0.337)VDS(0.618)DDES(0.003)VVK ; 138.93 1.97E-16 84918000 12791.8 11057.7 9011.9 10439.1 9948.1 10905.1 9521.8 9165.6 8908.3 8645.1 TRUE FALSE FALSE 11292.3646 11398.37463 9499.110574 10864.85162 9214.248482 10697.10339 9889.059016 10208.97486 8541.096103 8593.678561 1.314031531 1.326367347 1.105360237 1.264284153 1.072212373 1.244764196 1.150736433 1.187963313 0.993881263 1 13.0690601 -9.494319908 1.26138982 1.000902475 1.217213142 0.524396036 0.079791163 0.307828625 0.882275665 0.056570955 0.014003797 3.20E-10 9.494319908 0.216310667 LTPAEEENNSFQRLS(ph)P ddPTM_HeLa_CUDC101_4h_R1 1 LTPAEEENNSFQRLSP 16 1 Q5HYI7-5;Q5HYI7 Q5HYI7-5 MTX3 Metaxin-3 1 0 LTPAEEENNS(0.002)FQRLS(0.998)P 147.7 0.001085 11800000 2141.7 1623.1 1672.5 1756.4 2059.1 1871.9 1770.4 1433.6 1840.7 1613.1 TRUE FALSE FALSE 1890.653173 1673.105787 1762.920409 1828.033584 1907.204295 1836.196626 1838.684921 1596.795229 1764.825567 1603.505209 1.179075167 1.043405271 1.099416702 1.140023477 1.189397006 1.145114226 1.14666601 0.99581543 1.100604823 1 10.64701333 -9.494297515 1.183497886 0.998562373 1.125817363 0.059856884 0.064288507 0.399301559 0.982410571 0.042249053 0.009803097 3.20E-10 9.494297515 0.127254989 YSDEQLNSGRQS(ph)PSQNER ddPTM_HeLa_CUDC101_4h_R1 1 YSDEQLNSGRQSPSQNER 18 1 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 0 YSDEQLNS(0.005)GRQS(0.994)PS(0.002)QNER 103.67 0.0062924 10174000 1662.6 1294.9 1658.4 1602.2 1888.1 1538.7 1394.4 1462.7 1980.8 1773.1 TRUE FALSE FALSE 1467.712548 1334.794334 1748.05812 1667.544641 1748.818625 1509.351861 1448.182475 1629.207856 1899.150586 1762.553522 0.832719421 0.757307121 0.991775908 0.946095889 0.992207387 0.856343845 0.821638865 0.924345182 1.077499526 1 10.78345135 -9.494223958 1.281987809 0.999080045 0.88471414 0.343283347 0.076915983 0.523009645 1.557579297 0.051074033 0.012851419 3.20E-10 9.494223958 -0.114365905 (ac)S(ph)YDYHQNWGR ddPTM_HeLa_CUDC101_4h_R1 2 SYDYHQNWGR 10 0 Q9H2U1-3;Q9H2U1-2;Q9H2U1 Q9H2U1-3 DHX36 ATP-dependent RNA helicase DHX36 1 0 S(0.672)Y(0.328)DYHQNWGR;S(0.66)Y(0.34)DYHQNWGR ; 125.25 0.00095568 6155500 1399.16 1206.53 1356.03 1427.31 1677.74 1195.19 1029.02 1296.74 1461.25 1515.4 TRUE FALSE FALSE 1235.152586 1243.701759 1429.341084 1485.521871 1553.976463 1172.393742 1068.709646 1444.35564 1401.016657 1506.386333 0.8199441 0.825619386 0.948854256 0.986149329 1.031592247 0.778282248 0.709452564 0.958821524 0.930051359 1 10.5568761 -9.494221339 1.248427012 0.99978763 0.875132252 0.084516865 0.097828901 0.664076615 1.857279064 0.070091982 0.017174142 3.20E-10 9.494221339 -0.124655378 S(ph)TDSSSVSGSLQQETK ddPTM_HeLa_CUDC101_4h_R1 2 STDSSSVSGSLQQETK 16 0 Q9H8G2;A0A3B3ISJ3 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 0 S(0.993)T(0.006)DS(0.001)SSVSGSLQQETK;S(0.844)T(0.156)DSSSVSGSLQQETK ; 198.61 2.33E-16 33354000 3296.2 3306.5 3295.2 3209.5 3723.7 3470.3 2930.2 2447.75 3794 3930.1 TRUE FALSE FALSE 2909.824433 3408.369346 3473.348479 3340.397283 3449.01007 3404.109809 3043.218796 2726.391966 3637.609714 3906.72359 0.744824753 0.872436779 0.889069421 0.85503804 0.882839543 0.87134647 0.77896957 0.697871734 0.931115199 1 11.93174347 -9.493961672 1.207779198 1.001120322 0.821576738 0.42530543 0.064264905 0.323531826 0.836070516 0.048635344 0.011528036 3.21E-10 9.493961672 -0.179543584 ASEVEEILDGNDEK ddPTM_HeLa_CUDC101_4h_R1 2 ASEVEEILDGNDEK 14 0 A0A0U1RQQ2;A0A0U1RRB8;B5MCL5;A0A2R8YEE8;A0A0G2JSE9;C9JTA6;A0A2R8Y5N5;A0A0G2JRV3;G5E975;Q12824-2;Q12824 A0A0U1RQQ2 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 0 0 ; ; 211.38 4.64E-23 8476100 2971.4 2417.6 2332.1 2404 2545.9 2073.87 2179.76 1767.78 2750.3 2789.4 FALSE FALSE TRUE 2623.096996 2492.08339 2458.18038 2502.045511 2358.094029 2034.314385 2263.834073 1969.01693 2636.93147 2772.808525 0.94600726 0.898757836 0.88653088 0.902350627 0.850435221 0.733665656 0.816440823 0.710116444 0.950996597 1 11.43713228 -3.944491771 0.229254049 1.013525558 0.431002771 0.856056202 0.033675475 2.721505935 0.105665494 0.024820489 0.463045077 0.000113634 3.944491771 -0.582522787 ASFAEK(ac)TAQLER ddPTM_HeLa_CUDC101_4h_R1 2 ASFAEKTAQLER 12 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 1 ; ASFAEK(1)TAQLER;ASFAEK(1)TAQLER 119.21 0.002003 2085620 368.93 619.4 468.5 512.18 601.98 486.15 446.77 411.44 547.01 504.66 FALSE TRUE FALSE 325.6845847 638.4829798 493.8285271 533.0689142 557.5731347 476.8774987 464.0020686 458.2766665 524.4620163 501.6582599 0.649216032 1.272744876 0.984392298 1.062613649 1.11146009 0.950602306 0.924936567 0.913523614 1.045456755 1 8.970561094 -7.272827151 24.99820938 0.834352023 1.026724049 0.107769648 0.143539501 786.4493076 1726394.477 0.027389314 0.031467792 5.34E-08 7.272827151 0.192372027 SHWDDS(ph)TSDS(ph)ELEK ddPTM_HeLa_CUDC101_4h_R1 1 SHWDDSTSDSELEK 14 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 2 0 S(0.004)HWDDS(0.809)T(0.073)S(0.113)DS(1)ELEK 137.73 0.0057397 5412800 2098.7 2039.6 2287.7 1969.4 2571.8 2298.9 1873.2 1974.5 2757.5 2763.6 TRUE FALSE FALSE 1852.693567 2102.437658 2411.379982 2049.720644 2382.083438 2255.052313 1945.449951 2199.269099 2643.834683 2747.161984 0.674402739 0.765312592 0.877771313 0.746122965 0.867107019 0.820866161 0.708167179 0.800560401 0.96238762 1 11.42372626 -9.493763709 1.23310724 1.000256829 0.77347655 0.617737773 0.062046959 0.248697833 0.675506252 0.047549755 0.011514596 3.21E-10 9.493763709 -0.226780279 RS(ph)PS(ph)PYSLK ddPTM_HeLa_CUDC101_4h_R1 1 RSPSPYSLK 9 1 A8WI62;A8WI61;F6XDC4;E9PSF3;E9PI60;Q9ULD4-3;Q9ULD4-2;Q9ULD4 A8WI62 BRPF3 Bromodomain and PHD finger-containing protein 3 2 0 RS(1)PS(0.999)PYSLK 63.16 0.0030844 0 4297.7 3677.6 4431.6 3817.9 4211.7 4112.5 3816.9 3904.1 4596.8 4593.9 TRUE FALSE FALSE 3793.930121 3790.902497 4671.185701 3973.610464 3901.011282 4034.060914 3964.119112 4348.526963 4407.317958 4566.575278 0.830804244 0.830141247 1.02290785 0.870151092 0.854253142 0.883388682 0.868072652 0.952251238 0.965125436 1 12.1568969 -9.493496974 1.245128172 0.999852429 0.882528867 0.294164901 0.056627427 0.395092184 1.098363879 0.039199408 0.00959002 3.21E-10 9.493496974 -0.117323563 FKMPFLSISS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 FKMPFLSISSPK 12 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 FKMPFLSIS(0.007)S(0.993)PK;FKMPFLSIS(0.106)S(0.894)PK ; 122.78 0.0016312 50258000 18229.8 13834.9 12602.7 14708 15819 12980.4 12131 8512.6 13456.2 8879.1 TRUE FALSE FALSE 16092.93048 14261.13687 13284.04008 15307.85581 14652.06389 12732.8205 12598.89673 9481.639975 12901.52974 8826.286718 1.823295684 1.615757263 1.505054221 1.734348351 1.660048484 1.442602184 1.427428899 1.074250166 1.461716592 1 13.1075909 -9.493296361 1.243435237 1.000583221 1.571770642 0.087208541 0.240419976 0.306648045 0.849797654 0.148038605 0.036178882 3.21E-10 9.493296361 0.571187421 TNSPAYS(ph)DISDAGEDGEGKVDSVK ddPTM_HeLa_CUDC101_4h_R1 1 TNSPAYSDISDAGEDGEGKVDSVK 24 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 T(0.046)NS(0.041)PAY(0.205)S(0.475)DIS(0.233)DAGEDGEGKVDSVK 58.945 0.0042963 12814000 1162 1450.1 1270 1287.8 1344 1333.5 1040.1 729.6 1542.8 1640.4 TRUE FALSE FALSE 1025.792121 1494.775862 1338.660042 1340.32205 1244.855798 1308.065709 1080.217005 812.6547149 1479.205131 1630.642828 0.629072231 0.916678893 0.820940073 0.821959308 0.763414143 0.802177943 0.662448567 0.498364633 0.907130063 1 10.6712251 -9.493038165 1.163699144 1.004036749 0.73798053 0.348369887 0.11510224 0.405749414 0.958792843 0.089153694 0.020371744 3.21E-10 9.493038165 -0.266056219 ASGGQDGAASSAGAAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 ASGGQDGAASSAGAAKR 17 1 O60287 O60287 URB1 Nucleolar pre-ribosomal-associated protein 1 0 1 ; ASGGQDGAASSAGAAK(1)R;ASGGQDGAASSAGAAK(1)R 225.31 2.38E-32 640950 501.17 287.46 360.05 406.8 219.01 330.28 397.13 378.983 207.31 0 FALSE TRUE FALSE 442.4236123 296.3163019 379.5153921 423.3910623 202.8540686 323.9804593 412.4474371 422.1248928 198.7645941 0 0 ISVSS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 3 ISVSSPGR 8 0 O75864-2;O75864 O75864-2 PPP1R37 Protein phosphatase 1 regulatory subunit 37 1 0 ISVS(0.023)S(0.977)PGR;ISVS(0.064)S(0.936)PGR;IS(0.003)VS(0.028)S(0.969)PGR ;; 120.31 0.0074035 120690000 19775.6 16698.8 14980.8 16354.6 18565.2 17001.1 15750.9 14746.8 15066.6 15497.3 TRUE FALSE FALSE 17457.53415 17213.27024 15790.70736 17021.61128 17195.68218 16676.83234 16358.41749 16425.5161 14445.54837 15405.12137 1.133229251 1.117373231 1.025029728 1.104931981 1.116231529 1.082551182 1.061881766 1.066237371 0.93771078 1 13.91112243 -9.492633013 1.241573354 1.000074638 1.092613866 0.593081406 0.037173614 0.295023453 0.814883025 0.023055326 0.005631777 3.22E-10 9.492633013 0.092539228 TLDFDPLLSPAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 TLDFDPLLSPASPK 14 0 Q53H80 Q53H80 AKIRIN2 Akirin-2 1 0 TLDFDPLLS(0.318)PAS(0.682)PK;TLDFDPLLS(0.449)PAS(0.551)PK ; 189.8 2.49E-11 199709000 19328.8 19197.2 16795.9 16141.6 19102.8 17266.3 16560.9 18197.3 18327.9 19721.3 TRUE FALSE FALSE 17063.10736 19788.64298 17703.93716 16799.92422 17693.6245 16936.9741 17199.65946 20268.80708 17572.4162 19603.99683 0.870389213 1.009418801 0.903077944 0.856964239 0.902551896 0.863955154 0.877354736 1.033911975 0.89636906 1 14.2588602 -9.492617358 1.13040495 1.002102015 0.907725439 0 0.065642315 0.568188668 1.251069257 0.043795023 0.009718341 3.22E-10 9.492617358 -0.094376577 EMPSVFGK(ac)ENK ddPTM_HeLa_CUDC101_4h_R1 2 EMPSVFGKENK 11 1 Q9NZN4;Q9NZN4-2;Q9H223 Q9NZN4 EHD2;EHD4 EH domain-containing protein 2;EH domain-containing protein 4 0 1 ; EMPSVFGK(1)ENK;EMPSVFGK(1)ENK 142.07 0.00024753 1406720 503.68 611.98 800.78 698.03 984.78 843.82 799.23 1089.49 331.52 290.6 FALSE TRUE FALSE 444.6393939 630.8343784 844.072589 726.4986805 912.1347414 827.7255394 830.0565688 1213.513138 317.8546053 288.8714983 1.539229023 2.183788924 2.921965629 2.514954521 3.15757957 2.865376281 2.873445715 4.200875285 1.100332179 1 8.174284056 -6.640486838 0.390351315 0.936040341 3.71506399 0.855577698 0.35987582 0.321014076 0.110579424 0.166899911 0.347665077 2.29E-07 6.640486838 2.779023649 ASGQAFELILSPR ddPTM_HeLa_CUDC101_4h_R1 1 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 0 0 166.62 0.00017482 376460 173.62 206.2 191.51 116.42 220 204.03 149.67 300.64 218.32 237.1 FALSE FALSE TRUE 153.2685268 212.5527776 201.8636099 121.1681108 203.7710383 200.1384677 155.442822 334.8636424 209.3207572 235.6897187 0.65029789 0.901833049 0.856480338 0.514100112 0.864573302 0.84916079 0.659523135 1.420781714 0.888120018 1 7.880745016 -4.252527961 24.61841207 0.810475363 1.420782105 0.642760429 0.138966126 543.8979285 1502515.59 0.022237607 0.355078405 5.59E-05 4.252527961 0.610306742 DYDS(ph)PERER ddPTM_HeLa_CUDC101_4h_R1 1 DYDSPERER 9 1 P52756;C9JR02;C9J9P7;C9JFQ5;F8W910;P52756-3;P52756-4;P52756-2;P52756-5 P52756 RBM5 RNA-binding protein 5 1 0 DYDS(1)PERER 136.49 0.011669 45537000 4977.2 4318.4 4753 4789.3 5241.2 4544.6 4399.1 4722.4 5120.5 5443.8 TRUE FALSE FALSE 4393.780161 4451.444785 5009.961557 4984.628355 4854.567118 4457.919327 4568.774761 5259.978927 4909.430823 5411.420035 0.811945872 0.822601971 0.92581273 0.921131297 0.897096711 0.82379843 0.84428389 0.972014535 0.907235216 1 12.40179151 -9.491979488 1.248563195 0.999697304 0.869388888 0.145521466 0.057330849 0.333715964 0.9343882 0.03677728 0.009043868 3.22E-10 9.491979488 -0.130308416 ADAAS(ph)SLTVDVTPPTAK ddPTM_HeLa_CUDC101_4h_R1 1 ADAASSLTVDVTPPTAK 17 0 Q9H8Y8-2;Q9H8Y8;Q9H8Y8-3 Q9H8Y8-2 GORASP2 Golgi reassembly-stacking protein 2 1 0 ADAAS(0.715)S(0.061)LT(0.208)VDVT(0.011)PPT(0.005)AK 273.54 4.93E-86 69913000 2683.1 2471.4 2249.7 2392.6 2784.2 2068.6 2729.8 2457.6 2621.5 2745.4 TRUE FALSE FALSE 2368.591085 2547.540905 2371.325587 2490.18057 2578.815113 2029.144902 2835.0893 2737.36325 2513.44066 2729.070239 0.867911368 0.933483085 0.868913359 0.912464815 0.944942741 0.743529746 1.038848052 1.003038768 0.920987897 1 11.41419381 -9.491894617 1.22641659 1.000177619 0.907875898 0.010192395 0.07998228 0.677428325 1.8176127 0.052568597 0.012697202 3.22E-10 9.491894617 -0.092301721 WQELSPETSGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 WQELSPETSGKR 12 1 Q9NWF9-3;Q9NWF9;Q9NWF9-1 Q9NWF9-3 RNF216 E3 ubiquitin-protein ligase RNF216 0 1 ; WQELSPETSGK(1)R;WQELSPETSGK(1)R 244 2.13E-40 15594700 1086.04 1560.77 2837.7 4267.7 4640.9 5070.2 5301.9 2931.1 550.61 568.62 FALSE TRUE FALSE 958.7360375 1608.855474 2991.114646 4441.755253 4298.550053 4973.494383 5506.396059 3264.764576 527.9136227 565.237823 1.696163984 2.846333717 5.291780776 7.858206001 7.604852114 8.798941225 9.741733188 5.775913153 0.933967264 1 9.142714197 -6.639802585 1.369880766 1.276233401 8.242500776 0.907341583 0.964536807 0.072855492 0.275511235 0.157967984 0.248848735 2.29E-07 6.639802585 6.966267374 up ASGLLKS(ph)PASLK ddPTM_HeLa_CUDC101_4h_R1 1 ASGLLKSPASLK 12 1 E7EX48;P51957-3;P51957-2;P51957 E7EX48 NEK4 Serine/threonine-protein kinase Nek4 1 0 ASGLLKS(0.975)PAS(0.025)LK 105.46 0.035429 7807600 944.12 977.53 835.68 906.91 1038.1 947.39 830.28 771.69 950.05 1082.5 TRUE FALSE FALSE 833.4516848 1007.646541 880.8593886 943.8977098 961.5214312 929.3201142 862.3041777 859.5360703 910.8885369 1076.061242 0.774539266 0.936421183 0.818595963 0.877178429 0.89355642 0.863631249 0.801352325 0.798779881 0.846502505 1 10.07154447 -9.491196745 1.187530978 1.00154408 0.841390541 0 0.065867053 0.273672154 0.679791049 0.036429077 0.008524182 3.23E-10 9.491196745 -0.160153538 EVEKVK(ac)LDQK ddPTM_HeLa_CUDC101_4h_R1 2 EVEKVKLDQK 10 2 P37198;M0QXN5 P37198 NUP62 Nuclear pore glycoprotein p62 0 1 ; EVEK(0.223)VK(0.777)LDQK;EVEK(0.203)VK(0.797)LDQK 128.28 2.35E-05 0 549.11 1099 1894.92 3049.5 3111.1 3580.3 3439.5 2815 204.158 209.905 FALSE TRUE FALSE 484.7441582 1132.858887 1997.365107 3173.871791 2881.600351 3512.011743 3572.162667 3135.448221 195.7425208 208.6564757 2.323168531 5.42930136 9.57250476 15.21099108 13.81026082 16.83154923 17.11982652 15.02684357 0.938109015 1 7.704985886 -6.634853222 1.161643289 1.44274154 16.190663 0.979985032 0.902202104 0.037626131 0.101757763 0.158598032 0.257787171 2.32E-07 6.634853222 14.74792146 up S(ph)PGLCSDSLEK ddPTM_HeLa_CUDC101_4h_R1 2 SPGLCSDSLEK 11 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 S(1)PGLCSDSLEK;S(1)PGLCSDSLEK ; 179.67 9.55E-08 88426000 3630.9 2705.7 2513 2546.6 2786.2 2444.6 2750 2264.05 3316.3 1714.49 TRUE FALSE FALSE 3205.291406 2789.05941 2648.860381 2650.461355 2580.667577 2397.973328 2856.068421 2521.7803 3179.60071 1704.292137 1.880717124 1.636491391 1.554229069 1.555168446 1.514216677 1.40702012 1.675809187 1.47966434 1.865643009 1 10.73495694 -9.490589161 1.234102292 0.999933805 1.613963316 0 0.291925597 0.202206825 0.550983089 0.104529453 0.025459766 3.23E-10 9.490589161 0.614029511 RKS(ph)YTSDLQK ddPTM_HeLa_CUDC101_4h_R1 2 RKSYTSDLQK 10 2 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;E9PJ10;E9PK58 E9PMS6 LMO7 LIM domain only protein 7 1 0 RKS(0.946)Y(0.051)T(0.003)SDLQK;RKS(0.878)Y(0.113)T(0.008)S(0.001)DLQK ; 67.207 0.029227 28850000 11002.7 8333.9 7172.3 10026.7 10041 10236.8 8527.3 8574.3 7330.3 6539.6 TRUE FALSE FALSE 9712.980185 8590.657581 7560.056233 10435.63217 9300.295434 10041.5501 8856.200817 9550.363653 7028.141931 6500.702168 1.494143238 1.321496872 1.162959945 1.605308457 1.430660134 1.544686995 1.362345265 1.469128012 1.081135814 1 12.66637984 -9.490212546 0.65081612 0.913520262 1.432473095 0.620107429 0.119391154 0.602230984 0.332000465 0.189756624 0.025136144 3.23E-10 9.490212546 0.518952833 SDGSGESAQPPEDSS(ph)PPASSESSSTR ddPTM_HeLa_CUDC101_4h_R1 1 SDGSGESAQPPEDSSPPASSESSSTR 26 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 SDGSGESAQPPEDS(0.028)S(0.972)PPASSESSSTR 195.49 7.91E-23 5775600 1601.5 1250.6 1226.1 996.5 1344.7 1433.7 1348.4 1268.8 1194.3 1097.7 TRUE FALSE FALSE 1413.774598 1289.129504 1292.386675 1037.141577 1245.50416 1406.354561 1400.40824 1413.235063 1145.070448 1091.170832 1.295649184 1.181418589 1.184403612 0.950485064 1.141438283 1.288849116 1.283399628 1.29515473 1.049396131 1 10.09166127 -9.490104434 1.213286974 0.999140821 1.207054743 0.330326812 0.100603006 0.450075284 1.177737679 0.078313603 0.01876278 3.24E-10 9.490104434 0.207913923 T(ph)VT(ph)CY(ph)PERT(ph)T(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 TVTCYPERTTK 11 1 P58005-4;P58005 P58005-4 SESN3 Sestrin-3 5 0 T(1)VT(1)CY(1)PERT(1)T(1)K;T(1)VT(1)CY(1)PERT(1)T(1)K ; 43.77 0.032669 6188200 2350.63 2516.69 2376.22 1934.88 2672.9 2340.9 2386.01 2438.9 2684.7 3047.4 TRUE FALSE FALSE 2075.092715 2594.226236 2504.685641 2013.79277 2475.725492 2296.251233 2478.039205 2716.534518 2574.03553 3029.273929 0.685013229 0.856385489 0.826827055 0.664777375 0.817266959 0.758020333 0.818030744 0.896760934 0.849720293 1 11.56475633 -9.490036153 1.205148934 1.001272307 0.779055066 0.22459764 0.081964119 0.277994145 0.715808494 0.051578276 0.012274392 3.24E-10 9.490036153 -0.222217241 DCLIEDS(ph)DDEAGQS ddPTM_HeLa_CUDC101_4h_R1 1 DCLIEDSDDEAGQS 14 0 H3BSW6;Q2VPK5-3;Q2VPK5;H3BPG4 H3BSW6 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 1 0 DCLIEDS(1)DDEAGQS 129.76 0.00087263 13645000 2444.4 1899 1688.8 1662.3 2245.6 1668.1 1929.2 1730 1873.5 1403.4 TRUE FALSE FALSE 2157.871137 1957.505939 1780.101636 1730.095779 2079.946562 1636.283772 2003.60989 1926.936207 1796.273537 1395.052514 1.546802801 1.403177242 1.276010486 1.240165342 1.490944993 1.172919123 1.436225425 1.38126428 1.28760281 1 10.44610372 -9.489566247 1.228695432 0.999648267 1.38188985 0.200491129 0.137974885 0.254181484 0.685666941 0.081633526 0.019826763 3.24E-10 9.489566247 0.382241583 S(ph)LPVSVPVWGFK ddPTM_HeLa_CUDC101_4h_R1 2 SLPVSVPVWGFK 12 0 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 1 0 S(1)LPVSVPVWGFK;S(1)LPVSVPVWGFK ; 204.85 3.81E-17 1761800000 5769.31 4508.91 4314.19 4160.03 4745.93 5197.18 4597.97 4503.37 4200.89 3993.92 TRUE FALSE FALSE 5093.040228 4647.824173 4547.428161 4329.694005 4395.832199 5098.052451 4775.315243 5016.015438 4027.727536 3970.163986 1.28282868 1.170688211 1.145400587 1.090557977 1.107216784 1.284091153 1.202800504 1.263427771 1.014499036 1 11.95498288 -9.489512163 1.21197052 0.999155903 1.198207028 0.564808361 0.06516351 0.310772303 0.811298738 0.05173455 0.01239271 3.24E-10 9.489512163 0.199051125 T(ph)TPDQELAPASEPVWERPWSVEEIR ddPTM_HeLa_CUDC101_4h_R1 2 TTPDQELAPASEPVWERPWSVEEIR 25 1 Q641Q2;Q641Q2-2;E7ESD2;A0A087WYF6;Q5T1D7 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 T(0.73)T(0.231)PDQELAPAS(0.039)EPVWERPWSVEEIR;T(0.609)T(0.371)PDQELAPAS(0.02)EPVWERPWSVEEIR ; 77.03 0.00026273 27104000 733.16 791.57 879.82 574.23 595.52 854.09 762.32 435.46 634.29 1042.56 TRUE FALSE FALSE 647.2200962 815.9573335 927.3857305 597.6495814 551.589676 837.7996563 791.7229378 485.0310062 608.1442977 1036.358807 0.624513529 0.787330921 0.89485005 0.576682108 0.532238133 0.808406944 0.763946746 0.468014555 0.586808636 1 10.01730786 -9.489421414 0.700371156 1.055037226 0.681894633 0 0.181289129 0.787457674 0.520721295 0.186893042 0.026222505 3.24E-10 9.489421414 -0.373142593 TLEVVS(ph)PSQSVTGS(ph)AGHTPYYQS(ph)PTDEK ddPTM_HeLa_CUDC101_4h_R1 1 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 3 0 T(0.031)LEVVS(0.315)PS(0.312)QS(0.311)VT(0.311)GS(0.656)AGHT(0.061)PY(0.059)Y(0.052)QS(0.696)PT(0.197)DEK 48.337 0.02654 19722000 445.28 514.39 457.75 447.82 504.78 465.15 428.41 349.53 707.14 593.86 TRUE FALSE FALSE 393.0849534 530.2377462 482.4973496 466.0840352 467.5433851 456.2780387 444.9339172 389.3190824 677.9913899 590.3276943 0.665875847 0.898209166 0.817338157 0.789534423 0.792006524 0.772923316 0.753706664 0.659496558 1.148500056 1 9.205372215 -9.489372703 1.174862631 1.002823587 0.763987605 0.662075576 0.082889983 0.26695705 0.646648674 0.052742268 0.012241933 3.24E-10 9.489372703 -0.238835981 GADNDGS(ph)GSESGYTTPK ddPTM_HeLa_CUDC101_4h_R1 4 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 GADNDGS(0.939)GS(0.061)ES(0.001)GYTTPK;GADNDGS(0.932)GS(0.068)ESGYTTPK;GADNDGS(0.595)GS(0.403)ES(0.002)GYTTPK;GADNDGS(0.59)GS(0.385)ES(0.025)GYTTPK ;;; 210.47 9.51E-24 85125800 13161.7 12368.6 12860.9 12292 13336.8 12164.7 11176.4 10661.5 14409.2 13917.3 TRUE FALSE FALSE 11618.90548 12749.66191 13556.19916 12793.32089 12352.97083 11932.67862 11607.47749 11875.16206 13815.24668 13834.51928 0.839848877 0.921583298 0.979882198 0.924739099 0.892909293 0.862529328 0.839022828 0.858371861 0.998606919 1 13.75598489 -9.489071873 1.18013569 1.00122012 0.886962855 0.523603321 0.041599685 0.370733595 0.907925166 0.035090837 0.008186265 3.24E-10 9.489071873 -0.114257266 APAPS(ph)PAKEER ddPTM_HeLa_CUDC101_4h_R1 2 APAPSPAKEER 11 1 O75781-2;O75781 O75781-2 PALM Paralemmin-1 1 0 APAPS(1)PAKEER;APAPS(1)PAKEER ; 84.734 0.018132 53334000 8716.2 6848.2 6757.9 7191.5 7023.9 6737.4 6368.1 8293.8 6035.2 6292.9 TRUE FALSE FALSE 7694.500249 7059.184925 7123.252516 7484.800454 6505.760891 6608.89532 6613.71975 9237.932667 5786.426502 6255.469551 1.230043594 1.128482022 1.138723873 1.196520964 1.040011599 1.05649868 1.057269913 1.476776858 0.92501873 1 12.61090247 -9.488828037 1.212767063 0.999370843 1.161254362 0.290291738 0.12272418 0.606555934 1.586408413 0.08210867 0.019702974 3.24E-10 9.488828037 0.161883518 T(ph)GMIESNRS(ph)IK ddPTM_HeLa_CUDC101_4h_R1 1 TGMIESNRSIK 11 1 Q92796-3;Q92796-2 Q92796-3 2 0 T(0.996)GMIES(0.004)NRS(1)IK 66.056 0.035819 13249000 2122.1 2028.2 2298.6 2298.3 2458.5 2055.7 2235.8 1473.3 2939.3 2726.1 TRUE FALSE FALSE 1873.350655 2090.686438 2422.869269 2392.034608 2277.141353 2016.490948 2322.035555 1641.014517 2818.14081 2709.885036 0.691302631 0.771503739 0.89408563 0.882707043 0.84030921 0.744124168 0.856876039 0.605566101 1.039948475 1 11.40401593 -9.488538583 1.220534464 1.000493501 0.78388751 0.532008 0.086809533 0.343003628 0.91102812 0.062252171 0.015042052 3.25E-10 9.488538583 -0.216605991 S(ph)LDSESISPGDFHR ddPTM_HeLa_CUDC101_4h_R1 1 SLDSESISPGDFHR 14 0 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 S(0.511)LDS(0.489)ESISPGDFHR 139 2.81E-05 0 1304.4 1053 1020.8 988.58 1220.5 989.48 990.92 848.74 920.06 864.19 TRUE FALSE FALSE 1151.500209 1085.441682 1075.987536 1028.898565 1130.466147 970.6073176 1029.140116 945.3571309 882.1347374 859.0497594 1.34043482 1.263537612 1.252532259 1.197717075 1.315949553 1.129861579 1.197998259 1.100468419 1.02687269 1 9.74659789 -9.48833924 1.239157314 1.000346109 1.237461157 0.575197647 0.071908023 0.268822107 0.740321588 0.053670914 0.01317257 3.25E-10 9.48833924 0.237115047 GTNVMVTHYFLPPDDAVPS(ph)DDDLGTVPDYNQLKK ddPTM_HeLa_CUDC101_4h_R1 2 GTNVMVTHYFLPPDDAVPSDDDLGTVPDYNQLKK 34 1 P51610-2;P51610;A6NEM2;P51610-4;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 GTNVMVT(0.001)HY(0.014)FLPPDDAVPS(0.787)DDDLGT(0.193)VPDY(0.005)NQLKK;GTNVMVTHYFLPPDDAVPS(0.959)DDDLGT(0.041)VPDYNQLKK ; 90.899 3.61E-09 20232200 3455.5 3277.7 2877.19 2909.4 2692.6 3204.7 3077.6 2983.2 3409.7 3401.2 TRUE FALSE FALSE 3050.451528 3378.682052 3032.739594 3028.057907 2493.972262 3143.575687 3196.304063 3322.795429 3269.150723 3380.969511 0.902241655 0.999323431 0.897002941 0.895618224 0.73765003 0.929785281 0.945380919 0.982793669 0.966927005 1 11.72322129 -9.488263831 0.474321342 1.029719695 0.903414685 0.149852289 0.067721409 2.713794712 0.716201918 0.167886695 0.019177028 3.25E-10 9.488263831 -0.126305009 SHVTEEEEEEEEEES(ph)DS ddPTM_HeLa_CUDC101_4h_R1 3 SHVTEEEEEEEEEESDS 17 0 O75971-2;O75971 O75971-2 SNAPC5 snRNA-activating protein complex subunit 5 1 0 SHVTEEEEEEEEEES(0.5)DS(0.5);SHVTEEEEEEEEEES(0.5)DS(0.5);SHVTEEEEEEEEEES(0.5)DS(0.5) ;; 145.46 8.94E-05 32829000 4054.93 3700.21 3742.87 3855.69 4879.02 4491.85 3945.34 3736.95 4719.07 5086.9 TRUE FALSE FALSE 3579.617252 3814.209084 3945.220874 4012.941704 4519.104415 4406.175445 4097.513085 4162.349283 4524.547937 5056.642893 0.707903905 0.754296707 0.780205555 0.793598003 0.893696571 0.871363776 0.810322811 0.823144796 0.89477308 1 12.30396418 -9.48756683 1.243555658 0.999490489 0.796313329 0.448397745 0.059255635 0.249547275 0.693261927 0.042723123 0.010535729 3.25E-10 9.48756683 -0.20317716 S(ph)PSASITDEDSNV ddPTM_HeLa_CUDC101_4h_R1 1 SPSASITDEDSNV 13 0 Q86W92-4;Q86W92;Q86W92-3;H0YFE4;Q86W92-2 Q86W92-4;Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.868)PS(0.132)ASITDEDSNV 182.41 7.54E-11 15795000 1038.7 1029.4 946.28 1168.4 1162.4 1130.9 906.05 811.96 1294.4 1279.8 TRUE FALSE FALSE 916.9451606 1061.114594 997.4387591 1216.052402 1076.652068 1109.329967 940.996652 904.3902443 1241.044284 1272.187693 0.720762483 0.834086511 0.784034278 0.955874993 0.846299704 0.871986086 0.739668099 0.710893722 0.9755198 1 10.31309582 -9.487431921 1.214763274 1.000614656 0.804146625 0.502620796 0.07137406 0.332880814 0.87456251 0.054679051 0.013171657 3.26E-10 9.487431921 -0.196468031 ASLLTDEEDVDMALDQR ddPTM_HeLa_CUDC101_4h_R1 3 ASLLTDEEDVDMALDQR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 0 0 ;; ;; 206.2 8.13E-23 9250900 3025.84 1882.14 2195.5 2725.32 2532.87 2089.56 2163.33 2304.07 2620.13 2204.16 FALSE FALSE TRUE 2671.155622 1940.126503 2314.195371 2836.470329 2346.025226 2049.705124 2246.770363 2566.356015 2512.127132 2191.049558 1.219121499 0.885478147 1.056204029 1.294571507 1.070731247 0.935490079 1.025431102 1.17129072 1.146540535 1 11.0974064 -5.51926934 24.99860305 1.099198652 1.035690669 0.042308057 0.118613427 408.8241838 2831500.562 0.018920897 0.038461605 3.03E-06 5.51926934 -0.063507983 LLQTCFS(ph)SPADDSMDR ddPTM_HeLa_CUDC101_4h_R1 2 LLQTCFSSPADDSMDR 16 0 Q9NZL4-2;Q9NZL4;Q9NZL4-3 Q9NZL4-2 HSPBP1 Hsp70-binding protein 1 1 0 LLQT(0.005)CFS(0.887)S(0.107)PADDSMDR;LLQTCFS(0.818)S(0.182)PADDSMDR ; 179.56 8.72E-08 25417000 2825.5 2771.3 2405.3 2091.65 2974.7 3190.8 2539.4 2710.6 2689.3 980.34 TRUE FALSE FALSE 2494.299173 2856.680468 2535.337794 2176.956528 2755.262307 3129.940806 2637.345509 3019.163747 2578.445916 974.5088941 2.559544801 2.931405229 2.601656905 2.233901138 2.827334183 3.211813484 2.706332928 3.09813873 2.645892645 1 9.928531542 -9.486221712 0.357484312 0.1709519 2.929760253 0.043587859 0.577715927 0.811116329 0.119821634 0.895624456 0.106507306 3.26E-10 9.486221712 2.758808353 EAATQEDPEQLPELEAHGVS(ph)ES(ph)EGEERPVAEEEILLR ddPTM_HeLa_CUDC101_4h_R1 1 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR 37 1 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 2 0 EAAT(0.004)QEDPEQLPELEAHGVS(0.998)ES(0.998)EGEERPVAEEEILLR 57.533 0.00024102 10373000 1854.9 1141.9 1017.7 1174.4 1180.9 1386.3 1716.5 1516.5 1258.6 794.86 TRUE FALSE FALSE 1637.471434 1177.080586 1072.71994 1222.297108 1093.78736 1359.858637 1782.70598 1689.13223 1206.719975 790.1321374 2.072402015 1.489726249 1.357646259 1.546952782 1.384309419 1.72105218 2.256212468 2.137784492 1.52723819 1 9.625950132 -9.486172156 1.177276531 0.991943728 1.758859771 0.186663498 0.339704177 0.393943335 0.960325835 0.2496988 0.058374993 3.26E-10 9.486172156 0.766916043 LVPT(ph)S(ph)VIAS(ph)T(ph)T(ph)QK ddPTM_HeLa_CUDC101_4h_R1 1 LVPTSVIASTTQK 13 0 E9PMC9;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7;Q7Z589-2 E9PMC9 C11orf30;EMSY Protein EMSY 5 0 LVPT(1)S(1)VIAS(1)T(1)T(1)QK 44.132 0.038776 5173200 2227.3 1987.9 2078.2 2337 2636.9 2068 2321.3 1910.8 2423.3 2724 TRUE FALSE FALSE 1966.21927 2049.144843 2190.553778 2432.312961 2442.38114 2028.556346 2410.833319 2128.317748 2323.410548 2707.797527 0.726132309 0.756757041 0.808979902 0.898262495 0.901980712 0.74915363 0.89032998 0.785995898 0.858044416 1 11.40290415 -9.486158757 1.241625531 0.999524704 0.808758057 0.192483607 0.073917896 0.287717621 0.7967905 0.04619107 0.011398063 3.26E-10 9.486158757 -0.190766647 SFREPAPAEALPQQYPEPAPAALCGPPPRAPS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SFREPAPAEALPQQYPEPAPAALCGPPPRAPSR 33 2 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 SFREPAPAEALPQQY(0.001)PEPAPAALCGPPPRAPS(0.999)R 52.402 0.0042793 16790000 911.72 996.22 676.82 1011.4 967.51 746.72 1026.3 1096.5 1005 413 TRUE FALSE FALSE 804.8495637 1026.912357 713.4109365 1052.649264 896.1387149 732.4775601 1065.884735 1221.321128 963.5734746 410.5434576 1.960449128 2.501348733 1.737723311 2.564038579 2.182810853 1.784165711 2.596277483 2.974888785 2.347068152 1 8.681391135 -9.485931657 0.208634436 6.28E-15 2.684753592 0 0.537903428 3.554399567 0.214749809 2.617599771 0.494024489 3.27E-10 9.485931657 2.684753592 ISDYFEYQGGNGS(ph)SPVR ddPTM_HeLa_CUDC101_4h_R1 2 ISDYFEYQGGNGSSPVR 17 0 B3KRP1;Q9UKI8-5;Q9UKI8;Q9UKI8-2;C9JWT6;Q9UKI8-4 B3KRP1 TLK1 Serine/threonine-protein kinase tousled-like 1 1 0 ISDYFEYQGGNGS(0.5)S(0.5)PVR;ISDYFEYQGGNGS(0.5)S(0.5)PVR ; 202.96 6.14E-17 86021800 4715 4370.9 4032.4 3997 4593.4 4686.8 4179.9 3766.4 5037.9 4662.2 TRUE FALSE FALSE 4162.314847 4505.562248 4250.403741 4160.014937 4254.554033 4597.407099 4341.120143 4195.151752 4830.23563 4634.469027 0.898121192 0.972185211 0.917128525 0.89762493 0.918024052 0.992002983 0.936702806 0.905206557 1.042241431 1 12.17818834 -9.485545633 1.181247636 1.000687373 0.927958622 0.529829279 0.032843497 0.371768469 0.913915488 0.022366353 0.005252084 3.27E-10 9.485545633 -0.072728751 EKTPSPKEEDEEPES(ph)PPEK ddPTM_HeLa_CUDC101_4h_R1 3 EKTPSPKEEDEEPESPPEK 19 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EKT(0.017)PS(0.066)PKEEDEEPES(0.918)PPEK;EKT(0.001)PS(0.003)PKEEDEEPES(0.996)PPEK;EKT(0.011)PS(0.001)PKEEDEEPES(0.989)PPEK ;; 67.668 0.006775 654655000 8497.9 7721 8441.7 7903.2 8445 7867.4 7950.5 8808.8 8014.3 9793 TRUE FALSE FALSE 7501.789044 7958.874858 8898.083837 8225.526657 7822.029175 7717.342453 8257.153448 9811.558186 7683.947162 9734.7508 0.770619526 0.817573559 0.914053582 0.844965303 0.803516118 0.792762199 0.848214157 1.007890021 0.789331676 1 13.24892833 -9.485230022 1.225090244 1.000082719 0.839195271 0 0.09163222 0.349190066 0.936988256 0.047049099 0.011470604 3.27E-10 9.485230022 -0.160887448 VVAPVESHVPESNQAQGES(ph)PAANEGTTVQHPEAPQEEK ddPTM_HeLa_CUDC101_4h_R1 1 VVAPVESHVPESNQAQGESPAANEGTTVQHPEAPQEEK 38 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 VVAPVESHVPES(0.019)NQAQGES(0.631)PAANEGT(0.175)T(0.175)VQHPEAPQEEK 75.127 2.10E-07 9562500 1177.6 1220.6 869.18 1193.9 1183.6 1373.9 1111.9 1081.4 1449.4 1410 TRUE FALSE FALSE 1039.563513 1258.205239 916.1704999 1242.592402 1096.288186 1347.695147 1154.786355 1204.502205 1389.655119 1401.613257 0.741690697 0.897683603 0.653654277 0.886544413 0.782161684 0.961531392 0.823897997 0.859368445 0.991468304 1 10.45287261 -9.484828002 1.211583413 1.000557189 0.818411104 0.40270857 0.082247336 0.370268094 0.967724388 0.056260134 0.013571802 3.27E-10 9.484828002 -0.182146085 PS(ph)VICHTTVTALK ddPTM_HeLa_CUDC101_4h_R1 1 PSVICHTTVTALK 13 0 F8VWK5;F8VUY0;F8VVS9;Q15583-4;Q15583-2;Q15583-3;Q15583 F8VWK5 TGIF1 Homeobox protein TGIF1 1 0 PS(0.987)VICHT(0.004)T(0.004)VT(0.004)ALK 78.264 0.034832 3653800 1151.1 837.14 968.71 927.38 1035.1 937.11 992.71 942.41 1077.1 885.71 TRUE FALSE FALSE 1016.169803 862.9312911 1021.081393 965.2025649 958.7427352 919.2361881 1030.999157 1049.690145 1032.701482 880.4417575 1.154159028 0.980111727 1.15973758 1.096270772 1.088933739 1.044062461 1.171002112 1.192231214 1.172935601 1 9.782083761 -9.484657237 1.084020609 0.996458045 1.111625525 0 0.080729234 0.52970422 1.056143999 0.048818639 0.010507443 3.28E-10 9.484657237 0.11516748 IEDVTPIPS(ph)DSTRR ddPTM_HeLa_CUDC101_4h_R1 1 IEDVTPIPSDSTRR 14 1 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 1 0 IEDVTPIPS(0.596)DS(0.202)T(0.202)RR 97.129 0.0049393 2927300 2046.5 2482.4 1826.3 2149 2998.3 2170.1 1962.7 1832 2723 3042.9 TRUE FALSE FALSE 1806.612372 2558.879802 1925.035302 2236.645509 2777.121382 2128.708958 2038.401996 2040.547475 2610.756787 3024.800695 0.597266582 0.845966415 0.636417237 0.739435663 0.918117146 0.703751808 0.6738963 0.674605596 0.863116962 1 11.56262437 -9.484268895 1.191997846 1.001984528 0.715583208 0.388879063 0.09900562 0.289352595 0.727404924 0.068725178 0.016320802 3.28E-10 9.484268895 -0.28640132 ASNAAVK(ac)LAESK ddPTM_HeLa_CUDC101_4h_R1 2 ASNAAVKLAESK 12 1 F8VXG7;Q99590-2;Q99590;A0A087WTB7 F8VXG7 SCAF11 Protein SCAF11 0 1 ; ASNAAVK(1)LAESK;ASNAAVK(1)LAESK 212.68 7.88E-16 4078900 3482.1 3615.9 3040.1 3208.7 3037 2847.5 2532.9 1511.65 3267.2 3332 FALSE TRUE FALSE 3073.933517 3727.301593 3204.457002 3339.564655 2812.966561 2793.188682 2630.594801 1683.730126 3132.524633 3312.181116 0.928069272 1.125331455 0.967476382 1.008267525 0.84927921 0.843307955 0.794218284 0.508344824 0.945758859 1 11.69356585 -3.890721111 0.76217899 0.9796239 1.62E-21 0.841903437 0.062894803 1.215034498 0.34316104 0.010474958 1.155201576 0.000128611 3.890721111 -0.9796239 ASNGDAWVEAHGK ddPTM_HeLa_CUDC101_4h_R1 2 ASNGDAWVEAHGK 13 0 P38646;D6RJI2;A0A3B3ITI4 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 0 ; ; 107.74 0.0048612 26770000 17909.2 14914.1 13371.8 15036.3 17246.7 16679.5 12940 14924 14137.1 14028.4 FALSE FALSE TRUE 15809.91072 15373.58574 14094.71996 15649.54531 15974.4453 16361.36633 13439.10013 16622.88784 13554.36275 13944.95845 1.133736667 1.102447583 1.010739473 1.122236783 1.145535525 1.173281827 0.963724645 1.192035666 0.971990186 1 13.76745602 -9.401093759 1.008844464 0.997019291 1.104246628 0.329313004 0.067075462 0.616987133 1.072346562 0.049560303 0.011291377 3.97E-10 9.401093759 0.107227337 AALQELLS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 AALQELLSK 9 0 P62851 P62851 RPS25 40S ribosomal protein S25 1 0 AALQELLS(1)K 92.943 0.024524 7765900 1842.9 2310.7 1869.7 2226.5 3191.1 2505 2441.6 2172.5 2791.4 3829.3 TRUE FALSE FALSE 1626.878056 2381.889928 1970.781638 2317.306294 2955.698911 2457.221299 2535.77333 2419.808618 2676.337311 3806.523153 0.427392135 0.625738983 0.517737988 0.608772415 0.776482578 0.645529056 0.666165219 0.635700486 0.70309235 1 11.89425814 -9.484260642 1.22297415 1.000272135 0.598163022 0.266250352 0.12413244 0.216397734 0.578496108 0.072793526 0.017742943 3.28E-10 9.484260642 -0.402109113 NSS(ph)TYWEGK ddPTM_HeLa_CUDC101_4h_R1 1 NSSTYWEGK 9 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 1 0 NS(0.055)S(0.917)T(0.028)YWEGK 92.247 0.025506 10261000 1972.2 2132.9 1869.1 1864.3 2644.9 2195.1 1907.3 1675.9 2426.7 2701.8 TRUE FALSE FALSE 1741.021706 2198.612121 1970.1492 1940.334212 2449.790996 2153.232125 1980.8652 1866.677682 2326.670399 2685.729573 0.648249073 0.818627513 0.733562016 0.722460754 0.91215103 0.801730802 0.737551993 0.695035606 0.866308515 1 11.39109833 -9.484106708 1.204382849 1.001082121 0.752204565 0.400796035 0.079426642 0.261523748 0.674018035 0.054165118 0.013002325 3.28E-10 9.484106708 -0.248877557 SDEEDEDS(ph)DFGEEQR ddPTM_HeLa_CUDC101_4h_R1 1 SDEEDEDSDFGEEQR 15 0 Q5VW52;Q9HCL2 Q5VW52 GPAM "Glycerol-3-phosphate acyltransferase 1, mitochondrial" 1 0 S(0.021)DEEDEDS(0.979)DFGEEQR 207.85 2.00E-23 7207700 3890.5 3045 2666.7 2846.7 2952 2705.6 3019.5 2909.7 2803.2 2121.5 TRUE FALSE FALSE 3434.461488 3138.812841 2810.869868 2962.80073 2734.236841 2653.995188 3135.963126 3240.928487 2687.65091 2108.881224 1.628570376 1.488378201 1.332872538 1.404915885 1.2965343 1.258484906 1.487026909 1.536799916 1.274443947 1 11.04226213 -9.483944075 1.224347591 0.999853415 1.441112665 0.374441229 0.134420677 0.241618602 0.647732183 0.089209138 0.021779525 3.28E-10 9.483944075 0.44125925 NCHTASTTTSS(ph)TPPK ddPTM_HeLa_CUDC101_4h_R1 2 NCHTASTTTSSTPPK 15 0 H0Y4A4;A0A2R8Y6E3;P81274 H0Y4A4 GPSM2 G-protein-signaling modulator 2 1 0 NCHTAST(0.001)T(0.026)T(0.161)S(0.087)S(0.605)T(0.12)PPK;NCHTASTTT(0.014)S(0.105)S(0.86)T(0.022)PPK ; 120.9 0.00058389 5292000 4485.4 2758.72 2620.9 2331.71 4368.8 3436.5 2844.9 1643.82 4212.2 1159.97 TRUE FALSE FALSE 3959.628211 2843.712893 2762.593782 2426.807212 4046.522328 3370.954488 2954.628746 1830.945824 4038.571333 1153.070447 3.433986382 2.466209156 2.395858631 2.104647829 3.509345278 2.923459271 2.562400896 1.587887218 3.50244978 1 10.17126494 -9.483502562 1.205553384 0.993158773 2.715088755 0 0.942645712 0.288594372 0.745704641 0.413555397 0.099465873 3.28E-10 9.483502562 1.721929982 GGGGYTCQS(ph)GSGWDEFTK ddPTM_HeLa_CUDC101_4h_R1 2 GGGGYTCQSGSGWDEFTK 18 0 P15924-2;P15924-3;P15924 P15924-2 DSP Desmoplakin 1 0 GGGGYTCQS(0.968)GS(0.03)GWDEFT(0.002)K;GGGGYT(0.005)CQS(0.959)GS(0.036)GWDEFTK ; 163.79 1.53E-05 24759000 2539.8 1602.87 1769.79 1610.35 2302 1796.5 1415.33 1567.75 1740.76 928.48 TRUE FALSE FALSE 2242.088494 1652.252525 1865.470201 1676.027034 2132.186046 1762.234756 1469.919752 1746.216323 1669.005136 922.9573597 2.429243855 1.790172111 2.021187849 1.815931165 2.310167446 1.909334962 1.592619352 1.891979412 1.808323124 1 9.850120187 -9.483391736 1.205648107 0.996047104 2.007096527 0.179161194 0.336151237 0.222477433 0.574998014 0.187186838 0.04503246 3.29E-10 9.483391736 1.011049422 QGTPEAS(ph)GHDENGTPDAFSQLLTCPYCDR ddPTM_HeLa_CUDC101_4h_R1 1 QGTPEASGHDENGTPDAFSQLLTCPYCDR 29 0 P37275-3;P37275-4;P37275-5;P37275;P37275-2;H0YMN2;F6TDF5 P37275-3 ZEB1 Zinc finger E-box-binding homeobox 1 1 0 QGT(0.206)PEAS(0.555)GHDENGT(0.238)PDAFS(0.001)QLLTCPYCDR 64.779 0.00062296 6087000 967.07 526.57 689.82 593.23 803.19 822.51 714.39 399.9 812.67 345.31 TRUE FALSE FALSE 853.7115206 542.7929976 727.1137558 617.4244836 743.9402739 806.8219921 741.9442616 445.4229995 779.1713986 343.2560808 2.487098025 1.581306284 2.118283685 1.798728466 2.167303991 2.350495847 2.161489055 1.297640521 2.269942012 1 8.423141468 -9.482757468 1.184152206 0.991342731 2.053051634 0 0.51550324 0.284793484 0.705097984 0.249983953 0.059108194 3.29E-10 9.482757468 1.061708903 SGT(ph)PTQDEMMDKPTSSSVDTMSLLSK ddPTM_HeLa_CUDC101_4h_R1 4 SGTPTQDEMMDKPTSSSVDTMSLLSK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 S(0.059)GT(0.395)PT(0.346)QDEMMDKPT(0.036)S(0.036)S(0.034)S(0.07)VDT(0.017)MS(0.008)LLS(0.001)K;S(0.074)GT(0.634)PT(0.241)QDEMMDKPT(0.028)S(0.012)S(0.005)S(0.004)VDT(0.001)MSLLSK;S(0.116)GT(0.57)PT(0.261)QDEMMDKPT(0.022)S(0.012)S(0.012)S(0.004)VDT(0.002)MS(0.001)LLSK;S(0.043)GT(0.514)PT(0.071)QDEMMDKPT(0.233)S(0.067)S(0.067)S(0.004)VDT(0.002)MSLLSK ;;; 88.045 2.00E-05 202780000 7812.5 7194.25 6402.63 6800.15 7123.7 6831.63 6777.74 7123.65 8257.5 7359.9 TRUE FALSE FALSE 6896.730593 7415.896315 6748.775545 7077.48951 6598.198843 6701.32804 7039.159702 7934.577521 7917.122355 7316.122987 0.942675595 1.013637459 0.922452446 0.967382522 0.901870957 0.915967111 0.962143435 1.084533097 1.082147248 1 12.83686361 -9.482656584 1.102937484 1.001094382 0.9586501 0.147990318 0.057105593 1.146119418 2.386997743 0.039164189 0.008609455 3.29E-10 9.482656584 -0.042444282 HDDGTQS(ph)DSENAGAHR ddPTM_HeLa_CUDC101_4h_R1 2 HDDGTQSDSENAGAHR 16 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 HDDGTQS(1)DSENAGAHR;HDDGTQS(1)DSENAGAHR ; 235.21 1.81E-43 15341060 2493.65 1145.6 2423.17 2251.7 1645.07 1662.3 1832.33 887.67 2735.67 4397.35 TRUE FALSE FALSE 2201.348127 1180.894578 2554.1739 2343.534059 1523.716464 1630.594397 1903.003582 988.7187647 2622.904525 4371.194367 0.50360335 0.270153756 0.584319453 0.536131286 0.348581265 0.373031776 0.435350941 0.226189614 0.600042987 1 12.09381181 -9.482642559 0.33351753 1.297043232 0.349606879 0.393119753 0.163031071 1.077724152 0.140019358 0.388730642 0.04812013 3.29E-10 9.482642559 -0.947436353 AGSS(ph)PAQGAQNEPPR ddPTM_HeLa_CUDC101_4h_R1 3 AGSSPAQGAQNEPPR 15 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 AGS(0.498)S(0.502)PAQGAQNEPPR;AGS(0.057)S(0.943)PAQGAQNEPPR;AGS(0.118)S(0.882)PAQGAQNEPPR ;; 99.238 0.0061745 35699000 7493.3 6954 7572.6 7451.1 6625.4 7928.5 7195.6 6720.1 8863.4 8792.2 TRUE FALSE FALSE 6614.946733 7168.244497 7981.997662 7754.988064 6136.657442 7777.277072 7473.136702 7485.08902 8498.0469 8739.903603 0.756867242 0.82017432 0.913282117 0.887308192 0.702142463 0.88985845 0.855059397 0.856426954 0.972327303 1 13.09340165 -9.481715547 1.210636287 1.000429277 0.828633988 0.48919391 0.061309467 0.314561085 0.821624493 0.044994652 0.010898463 3.30E-10 9.481715547 -0.171795289 ATMAQNENVVVQPVVAENIPVIPLSDSPPPS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 ATMAQNENVVVQPVVAENIPVIPLSDSPPPSR 32 0 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 ATMAQNENVVVQPVVAENIPVIPLS(0.06)DS(0.228)PPPS(0.712)R 88.258 3.32E-08 8502500 748.05 825.59 727.9 497.22 835.97 816.27 644.86 650.58 857.09 865.92 TRUE FALSE FALSE 660.364713 851.0254493 767.2524758 517.4987808 774.3021586 800.7010097 669.7324662 724.6393975 821.7603874 860.7694693 0.767179525 0.988679873 0.891356517 0.601204851 0.899546494 0.930215392 0.778062524 0.84185072 0.954681151 1 9.749483098 -9.480715934 1.106830753 1.004211348 0.831949128 0.226965023 0.102139791 0.575067756 1.209204493 0.079791585 0.017659458 3.31E-10 9.480715934 -0.17226222 ASPGGVSTSSSDGK(ac)AEK ddPTM_HeLa_CUDC101_4h_R1 1 ASPGGVSTSSSDGKAEK 17 1 P54259 P54259 ATN1 Atrophin-1 0 1 ASPGGVSTSSSDGK(1)AEK 271.08 6.56E-134 0 0 223.44 262.52 296.34 410.15 411.63 151.81 277.39 265.66 246.88 FALSE TRUE FALSE 0 230.3239216 276.7126253 308.4260261 379.8940516 403.7788436 157.6653626 308.9669564 254.7093824 245.4115468 0 0.938521127 1.127545256 1.256770637 1.547987683 1.645313144 0.642452911 1.258974814 1.037886708 1 7.93905932 -6.961778436 3.795133927 0.524856404 1.247924233 0.28807926 0.375285385 0.184438925 5.697404864 0.07371387 0.096532676 1.09E-07 6.961778436 0.723067829 RDS(ph)DGVDGFEAEGK ddPTM_HeLa_CUDC101_4h_R1 5 RDSDGVDGFEAEGK 14 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 RDS(1)DGVDGFEAEGK;RDS(1)DGVDGFEAEGK;RDS(1)DGVDGFEAEGK;RDS(1)DGVDGFEAEGK;RDS(1)DGVDGFEAEGK ;;;; 220.42 2.61E-32 109575000 24130.3 21493.1 21473.6 21606 22996 23016 21289.3 19616 21022 23833.1 TRUE FALSE FALSE 21301.78281 22155.27694 22634.52777 22487.18607 21299.63089 22577.00815 22110.43543 21849.00615 20155.46426 23691.33966 0.89913796 0.935163535 0.955392481 0.949173259 0.899047129 0.952964605 0.933270796 0.922235993 0.850752408 1 14.53207216 -9.480510927 1.199840312 1.000313059 0.928693857 0 0.049851066 0.247399744 0.632794834 0.014698839 0.003534782 3.31E-10 9.480510927 -0.071619201 T(ph)GSPGPELLFHEGQQK ddPTM_HeLa_CUDC101_4h_R1 1 TGSPGPELLFHEGQQK 16 0 A6NHN7;A6NHB5;A6NL54;Q14202-2;Q14202;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 0 T(0.5)GS(0.5)PGPELLFHEGQQK 98.676 0.023416 14821000 1257.9 1264 1180.3 1246.1 1416 1245.1 1297.5 1155.6 1498.7 1605.7 TRUE FALSE FALSE 1110.450869 1302.942342 1244.110588 1296.921344 1311.544501 1221.351792 1347.54501 1287.148833 1436.922952 1596.149225 0.695706173 0.81630359 0.779445035 0.812531387 0.82169291 0.765186471 0.844247511 0.806408832 0.900243492 1 10.64037982 -9.479951403 1.205416003 1.000663965 0.785054576 0.603189514 0.048634325 0.185025148 0.478648992 0.033136835 0.008013282 3.31E-10 9.479951403 -0.21560939 SVSKESVAS(ph)MGADSGDDFASDGSSSR ddPTM_HeLa_CUDC101_4h_R1 1 SVSKESVASMGADSGDDFASDGSSSR 26 1 Q92805;Q5T165 Q92805 GOLGA1 Golgin subfamily A member 1 1 0 S(0.024)VS(0.213)KES(0.055)VAS(0.708)MGADSGDDFASDGSSSR 80.477 2.39E-05 24826000 1685 1701.1 1633.4 1723.8 2216.1 1996.2 1806.2 1935.7 1981.6 2604.4 TRUE FALSE FALSE 1487.486854 1753.508875 1721.706545 1794.104015 2052.622718 1958.125811 1875.865739 2156.052264 1899.917609 2588.908913 0.574561294 0.677315786 0.665031719 0.692996191 0.792852428 0.756351759 0.724577728 0.832803446 0.733868078 1 11.33812849 -9.479743988 1.224486143 0.999767483 0.700581124 0.063312858 0.105321511 0.224083089 0.601877381 0.055974362 0.013756563 3.31E-10 9.479743988 -0.299186359 TSS(ph)KES(ph)SPIPS(ph)PTSDR ddPTM_HeLa_CUDC101_4h_R1 2 TSSKESSPIPSPTSDR 16 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 3 0 T(0.332)S(0.122)S(0.579)KES(0.481)S(0.481)PIPS(0.836)PT(0.154)S(0.015)DR;T(0.238)S(0.322)S(0.438)KES(0.501)S(0.501)PIPS(0.915)PT(0.083)S(0.002)DR ; 114.28 0.0071655 84042000 6805.7 6004.9 6023 6115.5 6572 6283.1 6268.9 6553.4 7187.1 7090.6 TRUE FALSE FALSE 6007.946163 6189.903851 6348.621599 6364.916523 6087.196653 6163.260336 6510.693573 7299.412566 6890.844696 7048.424796 0.852381395 0.878196765 0.900714952 0.903026805 0.863625112 0.874416698 0.923709022 1.035609058 0.977643218 1 12.78308516 -9.479687615 1.228102827 0.999843281 0.896178622 0.309380582 0.049395246 0.401071637 1.084874025 0.034745434 0.008565344 3.31E-10 9.479687615 -0.103664659 S(ph)FGNPFEPQAR ddPTM_HeLa_CUDC101_4h_R1 1 SFGNPFEPQAR 11 0 J3KPJ3;Q8N5S9;Q8N5S9-2 J3KPJ3 CAMKK1 Calcium/calmodulin-dependent protein kinase kinase 1 1 0 S(1)FGNPFEPQAR 99.161 0.014626 8828300 864.44 812.58 765.44 767.43 1137.7 791.62 1035.6 874.92 1079.6 1143 TRUE FALSE FALSE 763.1116536 837.6146267 806.8220017 798.7291125 1053.774138 776.5211674 1075.543439 974.5173563 1035.098431 1136.201385 0.671634152 0.737206131 0.710104751 0.702981992 0.927453664 0.683436209 0.946613385 0.857697736 0.911016695 1 10.15000285 -9.479603352 1.232270094 0.999457633 0.769239705 0.32445795 0.098183632 0.352116288 0.960186959 0.067815697 0.016776895 3.31E-10 9.479603352 -0.230217929 VNPVTSLSENY(ph)TCSDSEESSEKDK ddPTM_HeLa_CUDC101_4h_R1 1 VNPVTSLSENYTCSDSEESSEKDK 24 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 VNPVTSLS(0.016)ENY(0.484)T(0.114)CS(0.385)DS(0.001)EESSEKDK 105.22 4.10E-06 602120000 1792.7 1201.6 1335.4 1322.5 1641.6 1225.8 1294.4 1165.9 1613.8 924.48 TRUE FALSE FALSE 1582.562424 1238.619872 1407.595763 1376.437266 1520.502439 1202.419907 1344.325442 1298.621343 1547.278481 918.9811518 1.722083658 1.347818581 1.531691657 1.497786177 1.654552365 1.308427169 1.462843323 1.413109878 1.683689027 1 9.843891462 -9.479520486 1.191004279 0.996965411 1.511717931 0 0.241063458 0.219773054 0.552471579 0.093562865 0.022366432 3.31E-10 9.479520486 0.51475252 T(ph)PCEEILVK ddPTM_HeLa_CUDC101_4h_R1 1 TPCEEILVK 9 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 1 0 T(1)PCEEILVK 129.88 0.016018 17629000 3495.7 2614.4 2628.5 2316.4 2237.8 2633 2701.6 2485.8 2818.8 1712.6 TRUE FALSE FALSE 3085.939345 2694.946565 2770.604661 2410.872804 2072.721952 2582.779912 2805.801617 2768.773424 2702.607871 1702.413379 1.812685088 1.583015382 1.627457053 1.416150057 1.217519774 1.517128533 1.648131794 1.626381382 1.587515643 1 10.73336568 -9.479258147 1.21653985 0.999616202 1.573054893 0 0.231773982 0.257145703 0.680175005 0.122817187 0.030009466 3.32E-10 9.479258147 0.573438691 GNAEGSS(ph)DEEGKLVIDEPAKEK ddPTM_HeLa_CUDC101_4h_R1 2 GNAEGSSDEEGKLVIDEPAKEK 22 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 GNAEGS(0.07)S(0.93)DEEGKLVIDEPAKEK;GNAEGS(0.042)S(0.958)DEEGKLVIDEPAKEK ; 118.15 8.19E-07 187864000 6299.7 5602.8 5678 5311.5 5297 5407.8 5622.9 4858.5 5903.2 7491.7 TRUE FALSE FALSE 5561.258716 5775.415627 5984.969855 5528.125928 4906.250863 5304.655225 5839.777137 5411.572001 5659.867597 7447.139035 0.746764454 0.775521391 0.803660282 0.742315391 0.658810161 0.7123078 0.784163839 0.726664559 0.76000563 1 12.86247058 -9.478660411 0.443831551 1.091808657 0.729694944 0.035384265 0.08404657 0.605632002 0.139235415 0.102399685 0.011755076 3.32E-10 9.478660411 -0.362113713 TPVQYSQQQNS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 4 TPVQYSQQQNSPQK 14 0 P46013 P46013 MKI67 Antigen KI-67 1 0 TPVQYSQQQNS(1)PQK;TPVQYSQQQNS(1)PQK;TPVQYSQQQNS(1)PQK;TPVQYSQQQNS(1)PQK ;;; 270.79 7.81E-86 88945000 8842.9 8157.6 10743.5 8476 9031.5 7832.8 7414.3 6420.9 9908.5 14987.7 TRUE FALSE FALSE 7806.348667 8408.925987 11324.32611 8821.687916 8365.264238 7683.40239 7700.272035 7151.829302 9500.067436 14898.55249 0.52396692 0.56441228 0.760095728 0.592117115 0.561481677 0.515714691 0.516846992 0.480035178 0.637650365 1 13.86288455 -9.478506028 0.57905266 1.106756045 0.555446649 0.180287787 0.13481687 0.471337077 0.197492945 0.145771072 0.018216114 3.32E-10 9.478506028 -0.551309396 ASQLVGIEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 ASQLVGIEKK 10 1 Q9NPD8 Q9NPD8 UBE2T Ubiquitin-conjugating enzyme E2 T 0 1 ; ASQLVGIEK(1)K;ASQLVGIEK(1)K 138.71 0.0010041 7443600 6896.3 7494 6522.6 6694 8056.4 6327.7 7408.3 10659.3 6238.8 6527 FALSE TRUE FALSE 6087.926168 7724.881257 6875.231486 6967.010254 7462.095423 6207.009665 7694.040613 11872.71163 5981.634023 6488.177114 0.938310724 1.190608876 1.059655334 1.073800874 1.150106616 0.956664647 1.185855515 1.829899434 0.921928289 1 12.66359749 -4.26623347 2.624474599 1.011699441 1.99307766 0.881043945 0.086716312 0.114833118 1.024614106 0.012942637 0.245345508 5.42E-05 4.26623347 0.981378219 MKRAVDCPENIKK ddPTM_HeLa_CUDC101_4h_R1 1 MKRAVDCPENIKK 13 3 A0A087WT52 A0A087WT52 CHEK1 0 0 51.875 0.039984 34702000 723.92 1443.4 3104 5223.2 5636.8 6192.1 5413.5 3978.9 212.82 273.78 FALSE FALSE TRUE 639.063195 1487.869443 3271.811629 5436.224673 5220.984494 6073.996009 5622.300508 4431.841893 204.0474695 272.1515444 2.348188751 5.467062281 12.02202117 19.97499108 19.18410754 22.318433 20.65871249 16.28446351 0.749756794 1 8.088266413 -6.634147262 1.588201604 1.580977107 20.09901313 0.965335896 1.555956353 0.041584324 0.212353065 0.258376016 0.399571673 2.32E-07 6.634147262 18.51803602 up SWSTATS(ph)PLGGER ddPTM_HeLa_CUDC101_4h_R1 1 SWSTATSPLGGER 13 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 SWSTAT(0.032)S(0.968)PLGGER 158.11 7.52E-05 5505100 1393.7 1560.9 1483.1 1771.7 1541.8 1702.5 1510.2 1163.2 1697.3 2206.1 TRUE FALSE FALSE 1230.332599 1608.989479 1563.280872 1843.957584 1428.064486 1670.027649 1568.44892 1295.613986 1627.336576 2192.978019 0.5610328 0.733700687 0.71285752 0.84084636 0.651198723 0.761534149 0.715214155 0.590801173 0.74206698 1 11.09867564 -9.478446919 1.197331291 1.001357083 0.689067536 0.159706208 0.108841615 0.231703097 0.590175944 0.05991981 0.014425396 3.32E-10 9.478446919 -0.312289548 LFEDDDS(ph)NEKLFDEEEDSSEK ddPTM_HeLa_CUDC101_4h_R1 2 LFEDDDSNEKLFDEEEDSSEK 21 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 LFEDDDS(1)NEKLFDEEEDSSEK;LFEDDDS(0.999)NEKLFDEEEDS(0.001)SEK ; 70.986 0.0025306 53830000 4957 3687.4 3331.4 3546.5 3155.2 3307.9 2890.1 1643.63 4489.1 6337.3 TRUE FALSE FALSE 4375.947974 3801.004423 3511.505561 3691.141599 2922.447182 3244.807319 3001.572125 1830.734195 4304.057398 6299.605458 0.694638419 0.603371822 0.557416744 0.585932186 0.463909558 0.515081038 0.476469859 0.290610929 0.683226502 1 12.62104576 -9.47805242 0.102843183 1.784343429 1.02E-22 0.610340296 0.110427529 4.432304905 0.111031923 1.463718837 0.568468253 3.33E-10 9.47805242 -1.784343429 DDSHSAEDS(ph)EDEKEDHK ddPTM_HeLa_CUDC101_4h_R1 1 DDSHSAEDSEDEKEDHK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 DDS(0.001)HSAEDS(0.998)EDEKEDHK 60.09 0.023233 22896000 5330 2532 4598.9 4649.4 3361.5 3512.2 3595 2090.5 5796.7 8081.1 TRUE FALSE FALSE 4705.22548 2610.007919 4847.530445 4839.022628 3113.528842 3445.210637 3733.660354 2328.47407 5557.757572 8033.033258 0.585734595 0.324909388 0.603449567 0.602390464 0.387590682 0.428880415 0.46478836 0.289862371 0.691862886 1 12.97172913 -9.4775527 0.272879427 1.334473578 0.367970113 0.518846335 0.137807631 1.537754156 0.141070923 0.490368238 0.071031701 3.33E-10 9.4775527 -0.966503465 DEEGES(ph)GAEEGPDLEEPGAGYKK ddPTM_HeLa_CUDC101_4h_R1 2 DEEGESGAEEGPDLEEPGAGYKK 23 1 Q9UQL6-2;Q9UQL6;Q9UQL6-3 Q9UQL6-2 HDAC5 Histone deacetylase 5 1 0 DEEGES(1)GAEEGPDLEEPGAGYKK;DEEGES(1)GAEEGPDLEEPGAGYKK ; 122.79 4.03E-07 0 2676.5 1763.47 1773.58 2089.79 2358.07 2121.4 1860.02 1632.34 1884.83 1323.54 TRUE FALSE FALSE 2362.764727 1817.80042 1869.4651 2175.020669 2184.119874 2080.937829 1931.761594 1818.158987 1807.13651 1315.667525 1.795867635 1.381656373 1.420925168 1.653168926 1.660084962 1.58165934 1.468274893 1.381928909 1.373551049 1 10.36157924 -9.477477187 1.178334907 0.995431294 1.566345147 0.335775467 0.170271795 0.226171953 0.554588065 0.106284723 0.025213262 3.33E-10 9.477477187 0.570913853 EVEK(ac)VKLDQK ddPTM_HeLa_CUDC101_4h_R1 1 EVEKVKLDQK 10 2 P37198;M0QXN5 P37198 NUP62 Nuclear pore glycoprotein p62 0 1 EVEK(0.5)VK(0.5)LDQK 97.965 0.025547 0 711.25 1539.9 2594.1 3960.2 4892.1 4934.8 4766.2 3855.7 345.39 254.45 FALSE TRUE FALSE 627.8783532 1587.342494 2734.344893 4121.714073 4531.219529 4840.676912 4950.033931 4294.617303 331.152878 252.9365201 2.482355466 6.27565562 10.81039975 16.29544864 17.91445351 19.13791219 19.57026185 16.97903214 1.309233154 1 7.982631544 -6.610596386 1.134296548 1.495180791 18.81735714 0.990479648 0.716858855 0.027669205 0.071283555 0.134440983 0.222535108 2.45E-07 6.610596386 17.32217635 up S(ph)SEMLVK ddPTM_HeLa_CUDC101_4h_R1 2 SSEMLVK 7 0 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 S(0.995)S(0.005)EMLVK;S(0.988)S(0.012)EMLVK ; 108.98 0.014414 37136000 4283.2 4788.1 3995.9 4009.4 4548.6 4454.2 4156.2 3460.8 5036.2 5328.9 TRUE FALSE FALSE 3781.129789 4935.615686 4211.930441 4172.920662 4213.05884 4369.243556 4316.506026 3854.763483 4828.605704 5297.203466 0.713797349 0.931739873 0.795123402 0.787759181 0.79533642 0.824820792 0.814865061 0.727697833 0.911538652 1 12.37101521 -9.477457784 1.144186135 1.003182257 0.794792747 0.493600728 0.061350226 0.256314817 0.585339746 0.043501905 0.010014361 3.33E-10 9.477457784 -0.20838951 TSKAETPT(ph)ESVSEPEVATK ddPTM_HeLa_CUDC101_4h_R1 1 TSKAETPTESVSEPEVATK 19 1 M0R0Q7;P18858-2;P18858;P18858-3;B4E135 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 0 T(0.283)S(0.027)KAET(0.103)PT(0.356)ES(0.225)VS(0.006)EPEVATK 72.899 0.013703 25200000 1447.3 1192.2 1722 1407.5 2190.1 1656.8 1497.5 1690.1 1464.1 2300.6 TRUE FALSE FALSE 1277.649688 1228.930269 1815.096529 1464.903934 2028.540686 1625.1993 1555.259077 1882.494152 1403.749178 2286.915929 0.558678031 0.537374485 0.793687475 0.640558717 0.887020227 0.710651091 0.680068321 0.823158442 0.61381757 1 11.15918762 -9.476913919 1.238338842 0.998701021 0.689604974 0 0.157612846 0.295938935 0.817299183 0.07653612 0.019106642 3.33E-10 9.476913919 -0.309096047 ESRS(ph)PQQSAALPR ddPTM_HeLa_CUDC101_4h_R1 1 ESRSPQQSAALPR 13 1 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;E5RJN3 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 ES(0.123)RS(0.875)PQQS(0.003)AALPR 121.95 0.010068 36901000 2372.3 2140.6 2288 2398 2254.1 2419.6 2145.9 2037.4 2226.4 2670 TRUE FALSE FALSE 2094.22259 2206.549349 2411.696201 2495.800805 2087.819534 2373.450161 2228.668082 2269.329381 2134.62685 2654.118721 0.789046313 0.831367991 0.908661765 0.9403501 0.786633814 0.894251694 0.83970173 0.855021805 0.804269542 1 11.37401719 -9.476867669 1.208758198 1.000244945 0.85075213 0 0.075688096 0.282049188 0.735400667 0.034999818 0.008528322 3.34E-10 9.476867669 -0.149492815 LRPS(ph)LDFDK ddPTM_HeLa_CUDC101_4h_R1 1 LRPSLDFDK 9 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 1 0 LRPS(1)LDFDK 71.548 0.035397 9548900 3172.7 3377.9 3159.7 3047.6 3395.7 3415.2 2402.5 2270.4 2813.7 4513.5 TRUE FALSE FALSE 2800.800916 3481.969095 3330.52294 3171.894301 3145.205976 3350.06075 2495.16523 2528.853159 2697.718095 4486.653501 0.624251664 0.776072655 0.742317841 0.706962171 0.70101379 0.746672492 0.556130584 0.563639059 0.601276228 1 12.13142406 -9.476850746 0.672863208 1.05971751 0.673787336 0 0.143655579 0.48557043 0.29307345 0.115892461 0.016062032 3.34E-10 9.476850746 -0.385930174 ASNIFGTPEENQAS(ph)WAK ddPTM_HeLa_CUDC101_4h_R1 1 ASNIFGTPEENQASWAK 17 0 Q9UK76-3;J3KSH8 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 ASNIFGT(0.052)PEENQAS(0.947)WAK 103.01 0.0023315 15053000 686.47 715.29 1611.3 923.01 2331 3029.8 2383.5 927.15 1775.7 3731.1 TRUE FALSE FALSE 606.0030272 737.3272371 1698.411752 960.6543374 2159.046774 2972.011613 2475.432393 1032.693008 1702.504894 3708.907251 0.16339126 0.19879905 0.457927804 0.259012769 0.582124768 0.801317318 0.667429037 0.278435922 0.459031402 1 11.85677848 -9.476482827 1.235152889 0.997824794 0.411084668 0.042369104 0.256765439 0.317597537 0.87191516 0.155752397 0.038807994 3.34E-10 9.476482827 -0.586740126 ACAS(ph)PSAQVEGS(ph)PVAGSDGSQPAVK ddPTM_HeLa_CUDC101_4h_R1 1 ACASPSAQVEGSPVAGSDGSQPAVK 25 0 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 2 0 ACAS(0.741)PS(0.259)AQVEGS(1)PVAGSDGSQPAVK 118.22 9.28E-09 15804000 5954.7 4994.7 4336.7 4859.7 5405.8 5056.3 4843.6 4059.3 5369.1 4338.2 TRUE FALSE FALSE 5256.699093 5148.580787 4571.15512 5057.899571 5007.024904 4959.859502 5030.419274 4521.394304 5147.783425 4312.396193 1.218974059 1.193902544 1.060003514 1.17287451 1.161077201 1.150140033 1.166502114 1.048464497 1.193717644 1 12.07427401 -9.476295293 1.216429065 1.000006245 1.154745218 0 0.078204138 0.286509283 0.758564462 0.036867465 0.009048904 3.34E-10 9.476295293 0.154738974 DHS(ph)NNDREVPPDLTK ddPTM_HeLa_CUDC101_4h_R1 1 DHSNNDREVPPDLTK 15 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;B7ZBA0;H0Y594 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 DHS(1)NNDREVPPDLTK 59.372 0.038772 6395000 1214.2 1066.2 1540.6 1354.8 1425.5 1297.4 1334.1 1175 1125.7 1838.3 TRUE FALSE FALSE 1071.873317 1099.048358 1623.889496 1410.0546 1320.343705 1272.654257 1385.556684 1308.75725 1079.29817 1827.36571 0.586567489 0.601438646 0.888650524 0.771632406 0.72253939 0.696442015 0.758226269 0.716198867 0.590630635 1 10.83554967 -9.476259704 1.221896433 0.999673567 0.708126318 0 0.148946186 0.261386691 0.699491698 0.063464462 0.01564827 3.34E-10 9.476259704 -0.291547249 S(ph)PGSPVCR ddPTM_HeLa_CUDC101_4h_R1 1 SPGSPVCR 8 0 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 S(0.878)PGS(0.122)PVCR 83.948 0.037318 13829000 640.93 485.53 582.29 507.36 432.71 512.48 351.31 460.61 450.95 355.54 TRUE FALSE FALSE 565.801157 500.4886038 613.7703587 528.0523338 400.7898454 502.7052978 364.8601444 513.0439806 432.3616501 353.4252323 1.600907647 1.416108863 1.736634237 1.494099135 1.134015935 1.422380894 1.032354544 1.451633708 1.223346866 1 8.465261232 -9.47613408 1.226018571 1.000859371 1.42379746 0.23227351 0.203463309 0.399106885 1.076685605 0.140719281 0.0348211 3.34E-10 9.47613408 0.422938089 AKTQT(ph)PPVS(ph)PAPQPTEER ddPTM_HeLa_CUDC101_4h_R1 2 AKTQTPPVSPAPQPTEER 18 1 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 2 0 AKT(0.151)QT(0.849)PPVS(0.999)PAPQPTEER;AKT(0.277)QT(0.754)PPVS(0.969)PAPQPTEER ; 89.631 0.0079177 405450000 5209.4 5055.9 5148.2 4826.9 5225.8 5154.2 4750.6 4044.3 5193.2 5822.6 TRUE FALSE FALSE 4598.762029 5211.666286 5426.527264 5023.761846 4840.303145 5055.892222 4933.832233 4504.686764 4979.134098 5787.966916 0.79453841 0.90043125 0.937553262 0.867966579 0.836270009 0.873517816 0.852429239 0.778284816 0.860256143 1 12.49884096 -9.475967531 1.159360006 1.001731886 0.853014914 0.025021892 0.060910758 0.291232657 0.687116303 0.035418214 0.008283644 3.34E-10 9.475967531 -0.148716972 TVSLTPSPT(ph)TQVETPDLVDHDNTSPLFR ddPTM_HeLa_CUDC101_4h_R1 1 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 T(0.002)VS(0.007)LT(0.077)PS(0.298)PT(0.308)T(0.308)QVETPDLVDHDNTSPLFR 94.495 2.15E-08 40960000 1344.1 1504.5 1211.3 1085.7 1460.8 1150.3 1267.2 1219.9 1445.7 1540.7 TRUE FALSE FALSE 1186.546636 1550.851862 1276.786542 1129.979539 1353.039694 1128.359944 1316.076328 1358.768485 1386.107634 1531.535848 0.774742973 1.012612185 0.833664157 0.73780809 0.88345284 0.736750593 0.859318004 0.887193393 0.905044199 1 10.58076342 -9.475945821 1.051400549 1.006223857 0.834530026 0.193490506 0.082406128 0.474254923 0.880519686 0.064089069 0.013554164 3.34E-10 9.475945821 -0.171693832 NNK(ac)K(ac)TSK(ac)NK ddPTM_HeLa_CUDC101_4h_R1 1 NNKKTSKNK 9 3 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 3 NNK(1)K(1)TSK(1)NK 182.64 1.80E-05 13331000 5621.8 3098.3 1987.5 1345.5 984.39 771.73 834.49 671.62 3047.9 2972.1 FALSE TRUE FALSE 4962.821126 3193.754951 2094.950262 1400.375306 911.7735109 757.010536 866.6765588 748.074506 2922.264272 2954.421817 1.679794367 1.081008451 0.709089762 0.473993015 0.30861318 0.256229673 0.293348957 0.253205044 0.989115452 1 11.52866011 -6.584313932 1.799837615 1.321577333 0.298014117 0.814927892 0.194535286 0.120049796 0.785203245 0.043526688 0.067662361 2.60E-07 6.584313932 -1.023563217 down EDEEES(ph)LNEVGYDDIGGCRK ddPTM_HeLa_CUDC101_4h_R1 2 EDEEESLNEVGYDDIGGCRK 20 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 EDEEES(0.999)LNEVGY(0.001)DDIGGCRK;EDEEES(1)LNEVGYDDIGGCRK ; 109.84 8.23E-05 20342100 3236.5 2357.6 2569.6 2253.1 2094.98 2560.3 2557.2 2143.13 2322.9 1674.04 TRUE FALSE FALSE 2857.122376 2430.234862 2708.520349 2344.991157 1940.437499 2511.466543 2655.832061 2387.095256 2227.149079 1664.082736 1.716935291 1.460405069 1.627635628 1.409179428 1.166070327 1.509219758 1.595973568 1.434481114 1.338364392 1 10.70051145 -9.474998855 1.204872893 0.999020656 1.508222599 0.285522738 0.173099265 0.262094175 0.678639012 0.11055466 0.026929103 3.35E-10 9.474998855 0.509201943 KGNAEGS(ph)SDEEGKLVIDEPAKEK ddPTM_HeLa_CUDC101_4h_R1 1 KGNAEGSSDEEGKLVIDEPAKEK 23 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 KGNAEGS(0.5)S(0.5)DEEGKLVIDEPAKEK 47.603 0.036545 29537000 1018.6 898.61 1158.9 1026.8 1142.3 1175.8 959.05 1070.2 1268.2 1417.1 TRUE FALSE FALSE 899.2012521 926.295109 1221.553639 1068.677342 1058.034805 1153.373574 996.0408798 1192.027242 1215.924259 1408.671026 0.638333035 0.657566665 0.867167434 0.75864224 0.75108722 0.818767159 0.707078417 0.846206971 0.863171199 1 10.46011902 -9.474476903 1.221338071 0.999622101 0.744342006 0.385753786 0.081938789 0.252129397 0.674450855 0.053543364 0.01323232 3.35E-10 9.474476903 -0.255280094 MVS(ph)MARNT(ph)YYLTLSK ddPTM_HeLa_CUDC101_4h_R1 1 MVSMARNTYYLTLSK 15 1 O75129-6 O75129-6 2 0 MVS(0.926)MARNT(0.965)Y(0.029)Y(0.029)LT(0.041)LS(0.01)K 51.927 0.0030987 0 513.9 1844.6 2668.3 1911 2060 973.13 617.08 142.29 3766.3 3546.8 TRUE FALSE FALSE 453.661421 1901.42994 2812.556369 1988.93884 1908.037904 954.5691666 640.8809823 158.4877184 3611.05152 3525.703476 0.128672597 0.539305121 0.797729131 0.564125388 0.541179347 0.270745731 0.181773932 0.044952084 1.02420738 1 11.78369543 -9.474307179 1.155178781 1.007677191 0.375309757 0.560444569 0.221750756 0.35730738 0.836269553 0.184379835 0.043076324 3.36E-10 9.474307179 -0.632367433 ATISS(ph)PLELEGTVSR ddPTM_HeLa_CUDC101_4h_R1 1 ATISSPLELEGTVSR 15 0 Q96GS4 Q96GS4 C17orf59 Uncharacterized protein C17orf59 1 0 AT(0.004)IS(0.261)S(0.735)PLELEGTVSR 71.513 0.036526 7126800 2330.9 2095.4 2392.4 2011.4 2221.5 2272.9 2156.6 1649.8 2259.9 2406.6 TRUE FALSE FALSE 2057.675435 2159.95679 2521.740381 2093.433586 2057.624371 2229.548219 2239.780784 1837.606563 2166.745965 2392.285436 0.860129567 0.902884228 1.054113503 0.875076843 0.860108221 0.931974164 0.936251482 0.768138507 0.905722174 1 11.22417382 -9.474277858 1.155615696 1.001223051 0.89971947 0.018787528 0.074408963 0.604782227 1.416792807 0.050099727 0.011709772 3.36E-10 9.474277858 -0.101503582 NYGYNPS(ph)PVKPEGLR ddPTM_HeLa_CUDC101_4h_R1 5 NYGYNPSPVKPEGLR 15 1 E9PRF4;Q15047-3;Q15047 E9PRF4 SETDB1 Histone-lysine N-methyltransferase SETDB1 1 0 NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR ;;;; 158.29 0.00039839 205871000 10565.9 9956.49 8859.26 9494.87 9913.1 9768.1 9900.86 10242.4 11279.31 11105.39 TRUE FALSE FALSE 9327.381219 10263.23766 9338.218393 9882.111839 9181.830363 9581.789767 10282.73949 11408.35341 10814.37207 11039.33465 0.844922409 0.929697123 0.845904096 0.895172776 0.83173766 0.86796805 0.931463699 1.033427628 0.979621727 1 13.4303656 -9.474079165 1.188732581 1.000548561 0.889646055 0.288936895 0.056645866 0.445601946 1.117540639 0.040730807 0.009800828 3.36E-10 9.474079165 -0.110902507 S(ph)ILPYPVSPK ddPTM_HeLa_CUDC101_4h_R1 1 SILPYPVSPK 10 0 Q8IWI9;Q8IWI9-3;H3BP52;H3BTF4 Q8IWI9 MGA MAX gene-associated protein 1 0 S(0.495)ILPY(0.089)PVS(0.415)PK 94.114 0.02264 40086000 4914.6 5174.8 4758.6 4589.2 4671.4 4174 4742 5126.8 4972.1 5850.9 TRUE FALSE FALSE 4338.518038 5334.229454 5015.86431 4776.367412 4326.800129 4094.387904 4924.900528 5710.414189 4767.147934 5816.098587 0.745949879 0.917149078 0.862410469 0.821232196 0.743935142 0.703974983 0.846770469 0.981828988 0.81964703 1 12.50583601 -9.474051676 1.143373878 1.002700848 0.817385051 0 0.096447197 0.413566702 0.944244156 0.062298673 0.014408349 3.36E-10 9.474051676 -0.185315797 AEEKENDTVT(ph)ISPK ddPTM_HeLa_CUDC101_4h_R1 1 AEEKENDTVTISPK 14 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 AEEKENDTVT(0.951)IS(0.049)PK 119.04 0.0017785 21532000 3827.8 3623.7 3372.5 3518.6 3557.2 3825.9 3541.3 3529.9 4215.5 4158.9 TRUE FALSE FALSE 3379.111087 3735.341902 3554.827551 3662.103717 3294.792443 3752.927332 3677.889127 3931.729548 4041.735306 4134.162678 0.817362874 0.903530459 0.859866393 0.885815098 0.796967294 0.907784145 0.889633383 0.951034068 0.977643025 1 12.01337944 -9.473904867 1.187674779 1.00067201 0.869977895 0.518720779 0.042798512 0.287857114 0.720437658 0.030995309 0.007453523 3.36E-10 9.473904867 -0.130694115 SLNFQEDDDT(ph)S(ph)RETFASDTNEALASLDESQEGHAEAK ddPTM_HeLa_CUDC101_4h_R1 1 SLNFQEDDDTSRETFASDTNEALASLDESQEGHAEAK 37 1 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 2 0 S(0.033)LNFQEDDDT(0.77)S(0.361)RET(0.265)FAS(0.265)DT(0.265)NEALAS(0.038)LDES(0.005)QEGHAEAK 54.745 0.0013321 5680000 798.54 772.97 595.39 621.11 1123.6 1010.7 863.03 483.16 810.57 973.78 TRUE FALSE FALSE 704.9363517 796.7842895 627.5785844 646.4415505 1040.714267 991.4225814 896.3173562 538.1609814 777.1579615 967.9879133 0.728249126 0.823134544 0.648333079 0.667819858 1.075131468 1.02420967 0.925959244 0.555958369 0.802859159 1 9.918845223 -9.473686332 1.222799133 0.999613168 0.807900305 0 0.16809958 0.708528384 1.901303474 0.112995829 0.027992547 3.36E-10 9.473686332 -0.191712863 LCDDGPQLPTS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 LCDDGPQLPTSPR 13 0 O60504-2;O60504;H0YAZ3;H0YB51 O60504-2 SORBS3 Vinexin 1 0 LCDDGPQLPTS(1)PR;LCDDGPQLPT(0.076)S(0.924)PR;LCDDGPQLPT(0.003)S(0.997)PR ;; 230.69 1.51E-34 807960000 20098.1 17307.4 15901.8 15773.7 16497 15224.1 15688 15888.3 17553 14189.5 TRUE FALSE FALSE 17742.23118 17840.62048 16761.49941 16417.01967 15280.04918 14933.72566 16293.09142 17696.95985 16829.45791 14105.10022 1.257859278 1.264834719 1.188328983 1.16390663 1.083299582 1.058746512 1.15512057 1.254649706 1.193146993 1 13.7839293 -9.473474078 1.236685085 1.000860433 1.181853884 0 0.088229028 0.343262552 0.946221149 0.051865321 0.012998877 3.36E-10 9.473474078 0.180993451 KNNPS(ph)PPPDSDLER ddPTM_HeLa_CUDC101_4h_R1 2 KNNPSPPPDSDLER 14 1 E7ESD5;E9PLN6;F2Z2Y1;O95677-3;O95677-5;O95677-2;O95677-4;O95677 E7ESD5 EYA4 Eyes absent homolog;Eyes absent homolog 4 1 0 KNNPS(0.994)PPPDS(0.006)DLER;KNNPS(0.999)PPPDS(0.001)DLER ; 62.438 0.035603 182496000 5739.4 5163 5826.5 5443 5817.5 5282.3 5088.7 5832 6292.5 6614.1 TRUE FALSE FALSE 5066.636232 5322.06591 6141.498214 5664.989067 5388.354615 5181.548928 5284.972864 6495.891306 6033.120487 6574.759039 0.770619304 0.809469348 0.934102402 0.861626872 0.819551649 0.78809716 0.803827613 0.988004468 0.917618494 1 12.68272231 -9.47344528 1.203829485 1.000287567 0.837164358 0.263688166 0.068882015 0.343025936 0.886906722 0.046301584 0.011295513 3.36E-10 9.47344528 -0.163123209 YEYDPDIS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 3 YEYDPDISPPR 11 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 YEYDPDIS(1)PPR;YEYDPDIS(1)PPR;YEYDPDIS(1)PPR ;; 119.21 0.0044122 105739000 2897.16 2670.49 2814.74 2665.18 2719.2 3134.43 2970.49 2774.12 3523.53 3493.31 TRUE FALSE FALSE 2557.559297 2752.764632 2966.913359 2773.87756 2518.610033 3074.64597 3085.062794 3089.914607 3378.288602 3472.531637 0.736511446 0.792725573 0.854394911 0.798805555 0.725295058 0.885419138 0.888418917 0.889816114 0.972860424 1 11.76177212 -9.473400816 1.21045829 1.000074008 0.813214449 0.563470623 0.057623922 0.287319158 0.752690706 0.044506039 0.010918492 3.36E-10 9.473400816 -0.18685956 NGIGPGSHSEFAASIGS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 NGIGPGSHSEFAASIGSPK 19 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 NGIGPGSHS(0.001)EFAAS(0.236)IGS(0.763)PK 56.947 0.025983 16304000 1222.5 1261 978.45 927 1326.2 1343.9 1125 1102.3 1299.4 1359.6 TRUE FALSE FALSE 1079.200403 1299.849915 1031.347967 964.8070668 1228.368868 1318.267347 1168.391627 1227.781376 1245.838182 1351.513039 0.798512757 0.961773862 0.763106191 0.713871816 0.908884216 0.975401131 0.864506367 0.908449524 0.921809961 1 10.40035972 -9.473276841 1.164960058 1.001407944 0.855834295 0.162540829 0.082714824 0.508236125 1.214543046 0.060525757 0.014285821 3.36E-10 9.473276841 -0.145573649 AKPAMPQDSVPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 5 AKPAMPQDSVPSPR 14 1 P53396 P53396 ACLY ATP-citrate synthase 1 0 AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR ;;;; 139.74 0.00030006 1698295000 19732.2 18231.1 18400.3 18106.8 18803 18337.5 17127.3 16069.1 19965.2 20133 TRUE FALSE FALSE 17419.22143 18792.77858 19395.07588 18845.27357 17415.94015 17987.74274 17787.9057 17898.34139 19142.22601 20013.24802 0.870384528 0.939016923 0.969111853 0.941639935 0.870220573 0.898791776 0.888806539 0.894324668 0.956477728 1 14.28866771 -9.472984119 1.141696233 1.00139253 0.906708257 0.389631525 0.03306447 0.335234466 0.763033018 0.02577424 0.005962096 3.37E-10 9.472984119 -0.094684273 SPCETIS(ph)SPSSTLESK ddPTM_HeLa_CUDC101_4h_R1 1 SPCETISSPSSTLESK 16 0 Q9C0D5 Q9C0D5 TANC1 Protein TANC1 1 0 SPCET(0.003)IS(0.949)S(0.048)PSSTLESK 160.04 6.36E-05 25226000 2159.2 1719.8 1397.2 1802.9 2056.3 1603.3 1522.6 1246.6 1809.5 1235.7 TRUE FALSE FALSE 1906.101849 1772.785 1472.736858 1876.430055 1904.610846 1572.719724 1581.327192 1388.507905 1734.911644 1228.350001 1.551757925 1.443224649 1.198955393 1.527602111 1.550544099 1.280351465 1.287358807 1.130384584 1.412391942 1 10.26250598 -9.472979276 1.206825768 0.999599032 1.391546852 0 0.188627682 0.325106677 0.845737297 0.105502634 0.025821118 3.37E-10 9.472979276 0.39194782 IPYPGRS(ph)PQDLASTSR ddPTM_HeLa_CUDC101_4h_R1 1 IPYPGRSPQDLASTSR 16 1 Q9HC52;C9J6K3;C9JM54 Q9HC52 CBX8 Chromobox protein homolog 8 1 0 IPYPGRS(0.955)PQDLAS(0.005)T(0.007)S(0.033)R 95.073 0.0029681 0 369.49 364.83 247.38 441.18 414.57 354.35 320.78 326.67 433.32 424.56 TRUE FALSE FALSE 326.1789423 376.0699799 260.7541111 459.1732273 383.987997 347.5913641 333.1525921 363.8567924 415.4583662 422.0346982 0.772872334 0.891087822 0.617849935 1.087998758 0.909849353 0.823608499 0.789396212 0.862148998 0.984417556 1 8.721217807 -9.472680951 1.20169284 1.000316173 0.838644573 0.214904868 0.112469027 0.572666257 1.474826748 0.076534521 0.018659615 3.37E-10 9.472680951 -0.161671599 S(ph)DS(ph)DFTSMT(ph)S(ph)LLTGSVK ddPTM_HeLa_CUDC101_4h_R1 1 SDSDFTSMTSLLTGSVK 17 0 E9PHY4 E9PHY4 BET1L 4 0 S(0.952)DS(0.956)DFT(0.195)S(0.329)MT(0.629)S(0.643)LLT(0.209)GS(0.088)VK 40.844 0.0032907 0 651.9 774.25 647 670.45 695.97 585.3 604.19 546.11 1066.2 845.22 TRUE FALSE FALSE 575.4852702 798.1037248 681.9787771 697.7938489 644.6296797 574.1363777 627.4938107 608.2769549 1022.250785 840.1925938 0.684944469 0.949905689 0.811693393 0.830516544 0.767240374 0.683339013 0.746845206 0.723973241 1.21668626 1 9.714576259 -9.472412301 1.083377697 1.006562432 0.769933238 0.584569972 0.103218575 0.338355519 0.677654527 0.06369809 0.013973804 3.37E-10 9.472412301 -0.236629194 RGS(ph)ALGPDEAGGELER ddPTM_HeLa_CUDC101_4h_R1 1 RGSALGPDEAGGELER 16 1 O75145-2;O75145;R4GNF1;R4GN36 O75145-2 PPFIA3 Liprin-alpha-3 1 0 RGS(1)ALGPDEAGGELER 66.387 0.021742 4963900 2641.1 2116.8 2127.1 2331.3 1947.7 2219.3 2370.8 1846.6 2118.1 1969.3 TRUE FALSE FALSE 2331.514262 2182.016099 2242.09746 2426.380491 1804.022051 2176.97055 2462.24255 2056.80948 2030.791021 1957.586516 1.191014672 1.114646061 1.145337609 1.239475482 0.921554188 1.112068628 1.257795009 1.050686375 1.037395285 1 10.93486035 -9.472403901 1.196025285 0.99958498 1.135890698 0.182653968 0.091644745 0.556434086 1.41706774 0.062588547 0.015193337 3.37E-10 9.472403901 0.136305718 MSSPET(ph)DEEIEK ddPTM_HeLa_CUDC101_4h_R1 1 MSSPETDEEIEK 12 0 D6REL5;Q6UWZ7-2;Q6UWZ7 D6REL5 FAM175A BRCA1-A complex subunit Abraxas 1 0 MSS(0.186)PET(0.814)DEEIEK 145.61 0.0046731 6746300 1144.5 1154.3 929.44 1127.8 1374.2 1352.7 1140.9 1225.8 1206.2 1567.9 TRUE FALSE FALSE 1010.343445 1189.862615 979.6883378 1173.796559 1272.828004 1326.899501 1184.904895 1365.340117 1156.479925 1558.574061 0.648248595 0.763430269 0.628579907 0.753122093 0.816661868 0.851354796 0.760249336 0.876018761 0.742011531 1 10.606011 -9.472342539 1.212045562 0.999950677 0.75055825 0 0.107914287 0.275816344 0.725118485 0.057015228 0.014028667 3.37E-10 9.472342539 -0.249392427 ASNIFGT(ph)PEENQASWAK ddPTM_HeLa_CUDC101_4h_R1 1 ASNIFGTPEENQASWAK 17 0 Q9UK76-3;J3KSH8 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 AS(0.002)NIFGT(0.998)PEENQASWAK 173.98 1.59E-06 13119000 439.74 718.67 1067.8 786.84 1389.3 1592.7 1427.8 665.1 1102.2 2438.9 TRUE FALSE FALSE 388.1943438 740.8113709 1125.528498 818.9307362 1286.814107 1562.321901 1482.870724 740.8122956 1056.766849 2424.393314 0.160120201 0.305565671 0.464251609 0.337787904 0.530777782 0.644417674 0.611646104 0.305566053 0.435889195 1 11.24340805 -9.472335751 1.214673429 0.999579774 0.404656664 0.023984358 0.221556706 0.238080757 0.629151589 0.117484788 0.028970589 3.37E-10 9.472335751 -0.59492311 DS(ph)RDS(ph)SFGQNDS(ph)PTVLPIT(ph)TR ddPTM_HeLa_CUDC101_4h_R1 1 DSRDSSFGQNDSPTVLPITTR 21 1 C9JL40;C9JCD6;F8WDW1;F8WC01 C9JL40 CARF 4 0 DS(0.667)RDS(0.667)S(0.667)FGQNDS(0.499)PT(0.499)VLPIT(0.735)T(0.265)R 43.81 0.033024 8252300 2244.7 1729 1812.8 1748.5 1572.7 1651.6 1597.9 1808.3 1644.8 1322.1 TRUE FALSE FALSE 1981.579669 1782.268441 1910.805451 1819.811388 1456.685054 1620.098482 1659.531538 2014.149563 1577.000648 1314.23609 1.507780591 1.356125017 1.453928609 1.384691382 1.108389174 1.232730172 1.262734717 1.532562967 1.199937104 1 10.36000875 -9.471656093 1.207643935 0.999821113 1.360573141 0.328201335 0.135615258 0.313653592 0.817690076 0.093641244 0.022980664 3.38E-10 9.471656093 0.360752028 S(ph)SPVPPVPER ddPTM_HeLa_CUDC101_4h_R1 1 SSPVPPVPER 10 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 S(0.878)S(0.122)PVPPVPER 87.789 0.031827 8781200 1132.5 1080.5 1120.7 1190.5 1321.2 1048 1045.9 1266.8 1187.3 1497.9 TRUE FALSE FALSE 999.7500668 1113.788924 1181.288432 1239.053736 1223.737708 1028.011146 1086.240713 1411.007391 1138.358991 1488.990424 0.671428137 0.748016177 0.793348575 0.832143522 0.821857339 0.690408165 0.729514909 0.947626908 0.764517335 1 10.54011876 -9.471639897 1.204394817 1.000277226 0.766493741 0 0.103847458 0.285417715 0.739315565 0.055170791 0.01350321 3.38E-10 9.471639897 -0.233783484 TSFSVGS(ph)DDELGPIRK ddPTM_HeLa_CUDC101_4h_R1 1 TSFSVGSDDELGPIRK 16 1 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 T(0.005)S(0.005)FS(0.024)VGS(0.967)DDELGPIRK 55.189 0.03928 7357000 803.09 751.67 760.97 871.87 920.46 798.42 856.32 715.17 950.72 1054.4 TRUE FALSE FALSE 708.9530076 774.8280618 802.11034 907.4286271 852.5594996 783.1914688 889.3485492 796.582062 911.5309192 1048.128382 0.676399017 0.739249194 0.765278714 0.865760953 0.813411329 0.747228567 0.848511084 0.760004285 0.869674875 1 10.03359972 -9.471279578 1.210423398 0.999970443 0.770255294 0.444577538 0.064773435 0.224125785 0.587590808 0.042631984 0.010492707 3.38E-10 9.471279578 -0.22971515 RLSLPGLLSQVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 RLSLPGLLSQVSPR 14 1 Q96Q42-3;Q96Q42 Q96Q42-3 ALS2 Alsin 1 0 RLSLPGLLS(0.007)QVS(0.993)PR;RLSLPGLLSQVS(1)PR ; 78.848 0.01513 12109900 4293.5 5119.3 4010.4 5390.9 7375.8 7541.3 6763.7 5552.1 5549.1 10202.4 TRUE FALSE FALSE 3790.222439 5277.019565 4227.214355 5610.764203 6831.701929 7397.462267 7024.578175 6184.128622 5320.363749 10141.71567 0.373725961 0.520328092 0.416814521 0.553236196 0.673623887 0.729409353 0.692641995 0.609771445 0.524601943 1 13.30801411 -9.471146935 1.21554472 0.999465778 0.555820291 0 0.18043451 0.249407337 0.660513947 0.091743152 0.022680708 3.38E-10 9.471146935 -0.443645487 ASSK(ac)RPATADSPKPSAK ddPTM_HeLa_CUDC101_4h_R1 1 ASSKRPATADSPKPSAK 17 3 Q03111 Q03111 MLLT1 Protein ENL 0 1 ASSK(0.997)RPATADSPK(0.003)PSAK 51.235 0.028738 9660800 2787 2865.2 3589.2 3648.8 3295 3053.6 2916.8 3352.7 2359 2788.7 FALSE TRUE FALSE 2460.312085 2953.473416 3783.243009 3797.613835 3051.934415 2995.357668 3029.301953 3734.357816 2261.761022 2772.112688 0.887522392 1.065423288 1.3647508 1.36993487 1.100941685 1.080532433 1.092777348 1.347116166 0.815897936 1 11.43677019 -6.98721289 7.322483929 0.948251332 1.214702234 0.60619224 0.115704785 0.085428195 24.65291419 0.01901606 0.024685101 1.03E-07 6.98721289 0.266450903 KMSGGST(ph)MSSGGGNTNNSNSK ddPTM_HeLa_CUDC101_4h_R1 2 KMSGGSTMSSGGGNTNNSNSK 21 1 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 KMS(0.253)GGS(0.32)T(0.408)MS(0.018)S(0.001)GGGNTNNSNSK;KMS(0.203)GGS(0.149)T(0.368)MS(0.241)S(0.039)GGGNTNNSNSK ; 80.944 0.0010717 17058800 5014.2 4981.9 4983.9 5163.3 5017.8 4610.4 4115.7 4595.6 5079.6 5818.2 TRUE FALSE FALSE 4426.443077 5135.386434 5253.344709 5373.881692 4647.646891 4522.464301 4274.443928 5118.744528 4870.216738 5783.593088 0.765344831 0.887923192 0.908318519 0.929159713 0.803591612 0.781947179 0.739063738 0.885045758 0.842074583 1 12.49775034 -9.470960322 1.144564396 1.002321415 0.830991372 0.009495452 0.077714497 0.360567558 0.826437468 0.050158995 0.011669703 3.38E-10 9.470960322 -0.171330044 DSRHLGSYTIS(ph)VFMGAR ddPTM_HeLa_CUDC101_4h_R1 1 DSRHLGSYTISVFMGAR 17 1 P42681 P42681 TXK Tyrosine-protein kinase TXK 1 0 DSRHLGSYT(0.001)IS(0.999)VFMGAR 78.917 0.0021533 0 474.71 235.6 289.43 561.46 474.04 448.54 568.6 346.35 468.07 199.23 TRUE FALSE FALSE 419.0652134 242.8585567 305.0774613 584.3587656 439.0710136 439.9848468 590.5310925 385.777084 448.7759565 198.0449711 2.116010374 1.226279846 1.540445383 2.950636729 2.217026826 2.221641097 2.981803018 1.947926685 2.266030559 1 7.629684258 -9.470539229 0.175569027 1.08E-13 2.74006109 0.072858478 0.596580096 7.542159074 0.36192559 5.085219115 1.171958002 3.38E-10 9.470539229 2.74006109 TYGGDT(ph)GSPEISFTK ddPTM_HeLa_CUDC101_4h_R1 2 TYGGDTGSPEISFTK 15 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 T(0.019)YGGDT(0.693)GS(0.158)PEIS(0.131)FTK;TYGGDT(0.902)GS(0.098)PEISFTK ; 202.01 6.01E-16 50521000 7835.6 5526.2 5536.2 5522.3 6840.5 6685.2 6623.6 5814.2 5287.7 4886 TRUE FALSE FALSE 6917.122846 5696.455672 5835.503718 5747.523263 6335.889943 6557.690948 6879.074471 6476.065026 5069.738768 4856.937855 1.424173636 1.172849199 1.201477946 1.183363559 1.304502988 1.350169828 1.416339817 1.333363782 1.043813802 1 12.24583131 -9.470406742 1.136730774 0.995302251 1.306158448 0.621333914 0.08598081 0.29065607 0.65534564 0.073156775 0.016915762 3.39E-10 9.470406742 0.310856197 (ac)MDLFGDLPEPERS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 7 MDLFGDLPEPERSPR 15 1 F8SNU6;E9PC05;F8SNU7;Q9H0C8 F8SNU6 ILKAP2;ILKAP;ILKAP3 Integrin-linked kinase-associated serine/threonine phosphatase 2C 1 0 MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR;MDLFGDLPEPERS(1)PR ;;;;;; 130.47 1.06E-11 45080000 1739.91 1917.01 1501.108 1407.265 2243.67 1970.66 1876.62 1467.433 2023.16 2323.99 TRUE FALSE FALSE 1535.960387 1976.070806 1582.262439 1464.659349 2078.158934 1933.072944 1949.001862 1634.479641 1939.764488 2310.166804 0.664869907 0.855380141 0.684912638 0.634005885 0.899570945 0.836767692 0.843662829 0.707515855 0.839664255 1 11.17378131 -9.470338606 1.177997968 1.00149868 0.760363586 0.224355867 0.098588906 0.32924133 0.809164988 0.065106126 0.015613252 3.39E-10 9.470338606 -0.241135094 GDLS(ph)DVEEEEEEEMDVDEATGAVKK ddPTM_HeLa_CUDC101_4h_R1 9 GDLSDVEEEEEEEMDVDEATGAVKK 25 1 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK;GDLS(1)DVEEEEEEEMDVDEATGAVKK ;;;;;;;; 205.12 6.77E-24 283324500 17956.8 15355.91 13428.47 13778.57 17558.43 14850.59 14744.25 13556.97 15769.4 13775.1 TRUE FALSE FALSE 15851.93112 15829.00739 14154.45371 14340.51964 16263.1796 14567.33974 15312.94066 15100.24067 15119.37866 13693.16509 1.157652816 1.155978715 1.033687508 1.047275743 1.187685936 1.063840218 1.118290808 1.102757512 1.104155143 1 13.74116833 -9.469644758 1.210087365 1.000050305 1.112076875 0.018710446 0.05682647 0.364909181 0.956659935 0.033818131 0.008342054 3.39E-10 9.469644758 0.11202657 ETS(ph)PESSLIQDEIAVK ddPTM_HeLa_CUDC101_4h_R1 5 ETSPESSLIQDEIAVK 16 0 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 ET(0.028)S(0.971)PESSLIQDEIAVK;ET(0.023)S(0.977)PESSLIQDEIAVK;ET(0.103)S(0.895)PES(0.001)SLIQDEIAVK;ET(0.109)S(0.889)PES(0.001)SLIQDEIAVK;ET(0.094)S(0.895)PES(0.01)S(0.001)LIQDEIAVK ;;;; 321.93 1.06E-166 485031000 23735.1 21392.6 19783.1 19776.1 21736.9 20610 19929.5 19925 22634.4 22860.4 TRUE FALSE FALSE 20952.90756 22051.68065 20852.63423 20582.65484 20133.41219 20216.89859 20698.18749 22193.18146 21701.40045 22724.42532 0.922043451 0.970395525 0.917630872 0.90575029 0.885981137 0.889654999 0.910834364 0.976622341 0.954981265 1 14.47195619 -9.46948995 0.391210747 1.032400388 0.913364503 0.298717876 0.031279482 1.713935226 0.305071868 0.087030487 0.010231595 3.39E-10 9.46948995 -0.119035885 NEEDEGHSNS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 4 NEEDEGHSNSSPR 13 0 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 NEEDEGHSNS(0.5)S(0.5)PR;NEEDEGHS(0.002)NS(0.761)S(0.237)PR;NEEDEGHS(0.017)NS(0.734)S(0.249)PR;NEEDEGHS(0.015)NS(0.76)S(0.224)PR ;;; 143.83 0.00039661 56593700 18804.64 4980.28 14868.46 15317.12 7440.55 7704.06 9089.75 2853.03 18031.42 30399.41 TRUE FALSE FALSE 16600.38861 5133.716524 15672.29392 15941.81836 6891.67545 7557.117891 9440.344702 3177.807403 17288.15724 30218.59296 0.549343533 0.169886021 0.518630829 0.527549988 0.228060766 0.250081726 0.312401862 0.105160667 0.572103316 1 14.88314887 -9.469200981 0.190061662 1.594917661 0.076835617 0.462201766 0.185004337 2.924539285 0.156300577 1.148177844 0.243021404 3.39E-10 9.469200981 -1.518082044 SVIEPLPVT(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 SVIEPLPVTPTR 12 0 H0YCM0;E9PM17;B3KNX7;Q13153;Q13153-2 H0YCM0 PAK1 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 1 1 0 SVIEPLPVT(0.5)PT(0.5)R 104.17 0.039365 8860300 1541.6 1269 1765.5 1417 1170.1 1699.8 1620 1279.8 1967.6 1769.3 TRUE FALSE FALSE 1360.895985 1308.096386 1860.94827 1474.791385 1083.784054 1667.379147 1682.483943 1425.487259 1886.494695 1758.776125 0.773774425 0.743753777 1.058092752 0.838532752 0.6162149 0.948033762 0.956622005 0.810499551 1.072617867 1 10.78035614 -9.469127856 1.214112586 0.999780952 0.839233506 0.277833216 0.12007962 0.612447037 1.618683328 0.081409089 0.020164572 3.40E-10 9.469127856 -0.160547446 (ac)RAPGMRS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 RAPGMRSR 8 2 P04066 P04066 FUCA1 Tissue alpha-L-fucosidase 1 0 RAPGMRS(1)R 46.457 0.0032972 0 290.52 306.48 481.1 426.12 388.33 398.68 437.44 237.06 500.61 652.26 TRUE FALSE FALSE 256.465686 315.9222855 507.1097212 443.4990154 359.6836696 391.0758432 454.3122073 264.0459522 479.9746439 648.3803285 0.395548222 0.487248412 0.782117685 0.684010597 0.554741799 0.603158094 0.700687833 0.407239302 0.740267128 1 9.340696511 -9.468755902 1.19872703 1.000692674 0.569060849 0.363138312 0.140771879 0.256862855 0.658648313 0.091389171 0.022360976 3.40E-10 9.468755902 -0.431631825 RLKEDILENEDEQNS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 2 RLKEDILENEDEQNSPPK 18 2 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 RLKEDILENEDEQNS(1)PPK;RLKEDILENEDEQNS(1)PPK ; 55.864 0.021863 46788000 12619.9 10113.8 10402.9 10626.3 10743.1 11936.4 10453.4 10114.2 9905.9 10399.6 TRUE FALSE FALSE 11140.61445 10425.39419 10965.31224 11059.68644 9950.602916 11708.73306 10856.59114 11265.55964 9497.574609 10337.74272 1.077664124 1.008478783 1.06070663 1.069835722 0.962550838 1.132619894 1.050189721 1.089750437 0.918728089 1 13.33563358 -9.468676494 1.07554336 0.998323444 1.056963659 0.30684816 0.050715565 0.702500125 1.384519146 0.032622616 0.007145685 3.40E-10 9.468676494 0.058640215 SAS(ph)PSVPGPTKPKPK ddPTM_HeLa_CUDC101_4h_R1 2 SASPSVPGPTKPKPK 15 2 Q03164-2;Q03164;Q03164-3;A0A3B3ITZ6 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 S(0.084)AS(0.458)PS(0.458)VPGPTKPKPK;S(0.102)AS(0.587)PS(0.311)VPGPTKPKPK ; 70.41 0.0159 361390000 16947.6 13500.2 13322.8 14677.2 13727.1 12948.7 14190.1 13971.7 12314.6 12535.6 TRUE FALSE FALSE 14961.02802 13916.12516 14043.07087 15275.79966 12714.47918 12701.72512 14737.41691 15562.18185 11806.98698 12461.03769 1.20062457 1.116770971 1.126958381 1.225885037 1.020338714 1.019315199 1.182679747 1.248867248 0.947512339 1 13.60513659 -9.468417115 1.180062395 0.999231859 1.143601309 0.428097659 0.076112301 0.464001416 1.146069344 0.054913777 0.013231805 3.40E-10 9.468417115 0.14436945 TPASTPVSGT(ph)PQASPMIER ddPTM_HeLa_CUDC101_4h_R1 3 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 0 TPASTPVS(0.135)GT(0.801)PQAS(0.065)PMIER;TPASTPVS(0.016)GT(0.905)PQAS(0.078)PMIER;TPAS(0.001)T(0.105)PVS(0.025)GT(0.853)PQAS(0.016)PMIER ;; 115.63 0.0021376 114025000 3068.88 3190.85 2686.83 2943.63 3535.42 3210.82 2429.5 2613.89 3546.86 3604.31 TRUE FALSE FALSE 2709.150539 3289.156306 2832.088157 3063.683955 3274.61911 3149.578958 2523.206629 2911.444672 3400.65693 3582.871404 0.756139485 0.918022428 0.790452081 0.855091799 0.913965013 0.879065588 0.704241471 0.81260094 0.949142893 1 11.80690055 -9.468218594 1.144195911 1.00229384 0.824062918 0.434862744 0.065665327 0.342943287 0.786365185 0.04955633 0.01157537 3.40E-10 9.468218594 -0.178230922 (ac)SLLDGLAS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 3 SLLDGLASSPR 11 0 E9PI10;E9PK87;F8W6N5;Q3YBR2 E9PI10 TBRG1 Transforming growth factor beta regulator 1 1 0 SLLDGLAS(0.501)S(0.499)PR;SLLDGLAS(0.642)S(0.358)PR;SLLDGLAS(0.572)S(0.428)PR ;; 101.39 9.58E-05 3938400 560.16 638.42 804.08 530.847 514.67 570.04 745.92 574.12 786.48 932.38 TRUE FALSE FALSE 494.4988939 658.0889635 847.550997 552.4972352 476.7038195 559.1674368 774.6903843 639.4755001 754.0609615 926.8341623 0.533535463 0.710039606 0.914458089 0.59611229 0.514335616 0.603309049 0.835845738 0.689956765 0.813587794 1 9.856167411 -9.466929164 1.160629239 1.003063147 0.664343631 0.297471092 0.131305144 0.339993821 0.807384956 0.09378903 0.02227278 3.41E-10 9.466929164 -0.338719516 ENDFAQSGQDAVPES(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 ENDFAQSGQDAVPESPSK 18 0 O60285;F8VZ96 O60285 NUAK1 NUAK family SNF1-like kinase 1 1 0 ENDFAQSGQDAVPES(0.862)PS(0.138)K;ENDFAQSGQDAVPES(0.995)PS(0.005)K ; 176.11 5.81E-17 6249500 1892.66 1795.5 1721.21 1471.5 1529.78 1203.75 1609.2 1505.87 1635.8 2144.5 TRUE FALSE FALSE 1670.805264 1850.817227 1814.263819 1531.51413 1416.931177 1180.790474 1671.267383 1677.292154 1568.371632 2131.744419 0.783773725 0.868217227 0.851070045 0.71843234 0.664681547 0.553908088 0.783990505 0.786816721 0.735722171 1 11.05781876 -9.46658846 0.227702523 1.179733655 0.67320891 0.025170155 0.113088338 3.827375227 0.265484387 0.564669816 0.09867898 3.42E-10 9.46658846 -0.506524745 GGS(ph)REYDTGGGSSSSR ddPTM_HeLa_CUDC101_4h_R1 2 GGSREYDTGGGSSSSR 16 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 GGS(0.999)REYDT(0.001)GGGSSSSR;GGS(0.999)REYDT(0.001)GGGSSSSR ; 185.59 4.16E-10 48149500 7370.5 6358 6846.5 7190.9 8044.4 6382.7 6768.9 5543.1 7096.2 7687.1 TRUE FALSE FALSE 6506.541163 6553.882444 7216.6425 7484.175984 7450.980639 6260.960632 7029.97874 6174.104098 6803.691632 7641.376787 0.851488069 0.857683455 0.944416523 0.979427686 0.975083528 0.819349812 0.919988496 0.807983204 0.890375101 1 12.89961688 -9.466342955 1.202171797 1.000033741 0.894007086 0 0.066431112 0.476054688 1.230257184 0.041593517 0.010244444 3.42E-10 9.466342955 -0.106026655 FGK(ac)FSGK ddPTM_HeLa_CUDC101_4h_R1 1 FGKFSGK 7 1 P35251-2;P35251 P35251-2 RFC1 Replication factor C subunit 1 0 1 FGK(1)FSGK 91.853 0.029971 1315900 523.8 594.53 816.59 732.01 746.25 871.51 854.89 924.67 306.41 416.63 FALSE TRUE FALSE 462.400958 612.8467646 860.7373254 761.8645318 691.2006242 854.8873988 887.8633937 1029.930695 293.7796501 414.1518662 1.116500964 1.479763378 2.078313285 1.839577686 1.668954508 2.064188208 2.143811162 2.486843062 0.709352472 1 8.694016079 -6.568828393 0.505740948 0.96930627 2.296415185 0.842799829 0.215551239 0.26401132 0.140276649 0.065596223 0.14218805 2.70E-07 6.568828393 1.327108914 up EKS(ph)PVREPVDNLSPEER ddPTM_HeLa_CUDC101_4h_R1 3 EKSPVREPVDNLSPEER 17 2 Q86U06-3;Q86U06-5;Q86U06-2;Q86U06 Q86U06-3 RBM23 Probable RNA-binding protein 23 1 0 EKS(0.994)PVREPVDNLS(0.006)PEER;EKS(0.986)PVREPVDNLS(0.014)PEER;EKS(0.987)PVREPVDNLS(0.013)PEER ;; 80.102 0.010471 167640000 3163.7 3458.05 3458.77 3244.64 3075.6 2779.47 2892.3 3017.19 3495.68 4072.75 TRUE FALSE FALSE 2792.855882 3564.588422 3645.761568 3376.970444 2848.719115 2726.456241 3003.85698 3360.654714 3351.586591 4048.525102 0.689845267 0.880465931 0.900515985 0.834123627 0.703643684 0.673444322 0.741963284 0.830093584 0.827853726 1 11.98318071 -9.466033902 1.107958125 1.004712642 0.77393175 0.157657532 0.091575121 0.353720948 0.750727248 0.065324726 0.014814604 3.42E-10 9.466033902 -0.230780893 EENGIPMK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EENGIPMKK 9 1 Q9H2U2-3;Q9H2U2;H0Y9D8;D6RAD3 Q9H2U2-3 PPA2 "Inorganic pyrophosphatase 2, mitochondrial" 0 1 ; EENGIPMK(1)K;EENGIPMK(1)K 116.52 0.002147 3211500 1436.11 1729.34 2333.68 2634.8 2988.8 3236.8 3219.7 2980.4 1168.48 1177.18 FALSE TRUE FALSE 1267.771363 1782.618916 2459.8458 2742.258533 2768.322179 3175.063433 3343.884908 3319.676689 1120.31476 1170.178081 1.083400367 1.523374044 2.102112353 2.343454024 2.365727254 2.713316447 2.857586347 2.83689871 0.957388263 1 10.19251238 -6.556351708 0.839483524 0.998128056 2.795150644 0.978428512 0.107492972 0.055973552 0.078896638 0.023740675 0.044093369 2.78E-07 6.556351708 1.797022587 up KGNSPNS(ph)EPPTPK ddPTM_HeLa_CUDC101_4h_R1 1 KGNSPNSEPPTPK 13 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 KGNS(0.005)PNS(0.995)EPPTPK 117.13 0.0014499 33578000 5384.1 4372.6 5348.2 5250.1 5430.9 4613.2 4542.1 4739.1 4907 5517.6 TRUE FALSE FALSE 4752.98396 4507.314623 5637.339869 5464.221771 5030.273327 4525.210896 4717.290318 5278.579988 4704.731383 5484.78107 0.866576788 0.821785695 1.02781493 0.996251573 0.917132929 0.825048591 0.860069027 0.962404866 0.857779248 1 12.42121832 -9.465198548 1.221491146 0.999642955 0.905045459 0 0.079099946 0.608695179 1.634533355 0.047669372 0.01195082 3.43E-10 9.465198548 -0.094597495 EVPWS(ph)PSAEK ddPTM_HeLa_CUDC101_4h_R1 1 EVPWSPSAEK 10 0 Q5JSZ5;Q5JSZ5-5;Q5JT00 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 EVPWS(0.927)PS(0.073)AEK 136.38 0.0016309 179230000 3386.3 3157.4 2906.5 3126 3173.6 3445.8 3088.5 3418.3 3600.6 3761.9 TRUE FALSE FALSE 2989.363047 3254.675752 3063.634182 3253.491792 2939.489851 3380.077106 3207.62448 3807.425455 3452.181744 3739.524051 0.799396663 0.870344917 0.819257782 0.87002831 0.786059886 0.903878959 0.857762762 1.018157766 0.923160728 1 11.86863895 -9.464842848 1.191282122 1.000300552 0.856405734 0.217175646 0.065847711 0.36049027 0.912125198 0.042582756 0.010416474 3.43E-10 9.464842848 -0.143894818 LTEGCS(ph)FR ddPTM_HeLa_CUDC101_4h_R1 2 LTEGCSFR 8 0 P42677;H0YMV8;Q71UM5;C9J1C5 P42677 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like 1 0 LTEGCS(1)FR;LTEGCS(1)FR ; 125.71 0.0063821 138212000 9845.1 8309.6 5897.5 7825.2 8714.3 7279 9316.6 6663.7 7528.7 6485.2 TRUE FALSE FALSE 8691.072302 8565.608927 6216.336689 8144.345479 8071.46345 7140.165203 9675.944383 7422.268672 7218.363799 6446.625742 1.348158347 1.328696479 0.964277583 1.263350132 1.252044678 1.107581778 1.500931614 1.151341643 1.119711937 1 12.65432852 -9.464084464 1.185560341 0.999212991 1.249723548 0.185376413 0.142303655 0.462350656 1.156811147 0.094889153 0.0231261 3.43E-10 9.464084464 0.250510557 LQTLS(ph)PSHK ddPTM_HeLa_CUDC101_4h_R1 1 LQTLSPSHK 9 0 H0YAP0;Q96GY0 H0YAP0 ZC2HC1A Zinc finger C2HC domain-containing protein 1A 1 0 LQT(0.003)LS(0.778)PS(0.219)HK 85.672 0.022303 19957000 1993.6 1680.5 2000.2 2085.5 2234.8 1939 1873 1292.9 1540.9 2248 TRUE FALSE FALSE 1759.91323 1732.274213 2108.336862 2170.555704 2069.943256 1902.016806 1945.242237 1440.07851 1477.38345 2234.628796 0.787564017 0.775195512 0.943484155 0.971327188 0.926302955 0.851155596 0.870499047 0.644437462 0.661131483 1 11.12581948 -9.463881036 1.205674844 0.999847848 0.848229515 0 0.13825997 0.517111456 1.346942904 0.064588116 0.016014833 3.44E-10 9.463881036 -0.151618334 SYQNS(ph)PSSDDGIRPLPEY(ph)STEK ddPTM_HeLa_CUDC101_4h_R1 1 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 0 S(0.012)Y(0.001)QNS(0.812)PS(0.098)S(0.098)DDGIRPLPEY(0.919)S(0.027)T(0.034)EK 70.771 0.00228 31204000 8181.1 8171.4 6972.7 7701 8584.5 7225.5 6768.7 6887.2 8459.6 8601.5 TRUE FALSE FALSE 7222.12386 8423.151149 7349.665253 8015.080067 7951.238538 7087.685626 7029.771026 7671.211009 8110.891707 8550.337895 0.844659468 0.985124945 0.859576001 0.937399219 0.929932669 0.82893632 0.82216295 0.897182205 0.948604816 1 13.06176572 -9.463739737 1.047817175 1.004045923 0.884857494 0.290541467 0.051531267 0.445251405 0.824707934 0.041486235 0.008915708 3.44E-10 9.463739737 -0.11918843 MFTMT(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 MFTMTR 6 0 G5E9C0;Q9HB58-5;Q9HB58-3;Q9HB58-7;Q9HB58;Q9HB58-6;E7EM70 G5E9C0 SP110 Sp110 nuclear body protein 1 0 MFT(0.003)MT(0.997)R 44.945 0.038822 3461400 410.15 640.82 2204.7 539.51 403.18 324.73 805.33 2131 5071 2261.7 TRUE FALSE FALSE 362.0728387 660.5629046 2323.892751 561.5135498 373.4382146 318.5363163 836.3918479 2373.584426 4861.971234 2248.247308 0.161046713 0.293812385 1.033646407 0.249756131 0.166101929 0.141682063 0.372019504 1.055748813 2.162560683 1 11.13458503 -9.463104584 1.176310652 1.002908582 0.396712182 0.352740333 0.497001765 0.468693782 1.151335125 0.232029347 0.05618877 3.44E-10 9.463104584 -0.6061964 ASVITQVFHVPLEER ddPTM_HeLa_CUDC101_4h_R1 1 ASVITQVFHVPLEER 15 0 Q00341;Q00341-2;A0A024R4E5;C9JHZ8;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JK79;C9JHS7;C9JT62 Q00341 HDLBP Vigilin 0 0 97.235 0.006506 5576200 973.3 1076.4 1182.4 1181.3 1613.3 1409 1364.3 1184 1524.5 1345.8 FALSE FALSE TRUE 859.2112494 1109.562608 1246.324121 1229.47852 1494.290073 1382.125673 1416.921508 1318.781774 1461.659465 1337.795122 0.642259219 0.829396512 0.931625553 0.91903349 1.116979759 1.033137025 1.059146864 0.985787549 1.092588425 1 10.38564147 -6.224421162 1.783518527 0.828412432 1.045263781 0.155264321 0.123363094 0.313572317 1.946374593 0.02233639 0.040518203 5.96E-07 6.224421162 0.21685135 TGHILHPEYLQPLPSTPVS(ph)PIELDAK ddPTM_HeLa_CUDC101_4h_R1 2 TGHILHPEYLQPLPSTPVSPIELDAK 26 0 Q96F45;Q96F45-3;Q96F45-2 Q96F45 ZNF503 Zinc finger protein 503 1 0 TGHILHPEYLQPLPS(0.015)T(0.015)PVS(0.97)PIELDAK;TGHILHPEYLQPLPS(0.012)T(0.012)PVS(0.976)PIELDAK ; 86.617 1.65E-05 87275000 3432 2870.4 3234 3388.3 3940.6 3483.9 3070.9 2741.2 3467.5 3885.6 TRUE FALSE FALSE 3029.706163 2958.833622 3408.839822 3526.489519 3649.909789 3417.450412 3189.345642 3053.247128 3324.568182 3862.488278 0.784392325 0.766043392 0.882550205 0.913009766 0.944963331 0.884779491 0.82572306 0.790487092 0.860732239 1 11.91531484 -9.46287703 1.218882968 0.999402187 0.846271632 0.055747755 0.069412605 0.343505406 0.918555993 0.043463585 0.010911694 3.44E-10 9.46287703 -0.153130555 DLQAALTPGALTAAAAGTGT(ph)QGPR ddPTM_HeLa_CUDC101_4h_R1 2 DLQAALTPGALTAAAAGTGTQGPR 24 0 P55042 P55042 RRAD GTP-binding protein RAD 1 0 DLQAALTPGALTAAAAGT(0.002)GT(0.998)QGPR;DLQAALTPGALTAAAAGT(0.002)GT(0.998)QGPR ; 100.4 4.88E-05 89310000 3998.4 4111.1 3757.5 3569.3 3852 4197.6 4059.6 3796.3 4011.4 4926.3 TRUE FALSE FALSE 3529.713613 4237.758118 3960.641816 3714.871482 3567.845634 4117.537774 4216.180132 4228.455447 3846.048394 4896.998149 0.72079129 0.865378746 0.808789731 0.758601774 0.728578106 0.840828942 0.860972376 0.863479078 0.785388983 1 12.25768194 -9.462614611 1.155918824 1.001813147 0.79832796 0 0.083243951 0.254441468 0.599412244 0.042014896 0.01000328 3.45E-10 9.462614611 -0.203485187 SYSS(ph)PDITQAIQEEEK ddPTM_HeLa_CUDC101_4h_R1 1 SYSSPDITQAIQEEEK 16 0 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 SYS(0.282)S(0.715)PDIT(0.002)QAIQEEEK 195.45 3.36E-16 79199000 2788.3 2575.9 2052.1 1925 2388.7 2032.4 2306.6 2117 2225.4 1882.3 TRUE FALSE FALSE 2461.459701 2655.260426 2163.042733 2003.509821 2212.49036 1993.635356 2395.566335 2357.990723 2133.66807 1871.103996 1.315511968 1.419087572 1.156024859 1.070763477 1.182451838 1.06548613 1.280295665 1.260213611 1.140325751 1 10.86967403 -9.462605982 1.238048445 1.001712531 1.224195821 0.186274675 0.110777316 0.407040042 1.129469662 0.075189007 0.01917936 3.45E-10 9.462605982 0.22248329 IERPGEGS(ph)PMVDNPMR ddPTM_HeLa_CUDC101_4h_R1 1 IERPGEGSPMVDNPMR 16 1 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 1 0 IERPGEGS(1)PMVDNPMR 161.48 0.00026328 22036000 1454.9 1486.2 1217.2 1100.4 1453.2 1379.8 1224.6 1444.7 1540.5 1512.7 TRUE FALSE FALSE 1284.358827 1531.98806 1283.005514 1145.279068 1346.000331 1353.482614 1271.833232 1609.158808 1476.999938 1503.702393 0.854130999 1.018810682 0.853231011 0.761639453 0.895124153 0.90010006 0.845801163 1.070131175 0.982242194 1 10.55430335 -9.462576001 1.03817317 1.004031874 0.891589624 0.153282052 0.083799846 0.77008895 1.394896546 0.067395177 0.014373091 3.45E-10 9.462576001 -0.11244225 TTKS(ph)PSDSGYSYETIGK ddPTM_HeLa_CUDC101_4h_R1 3 TTKSPSDSGYSYETIGK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.204)T(0.048)KS(0.712)PS(0.015)DS(0.013)GYS(0.008)YETIGK;T(0.406)T(0.08)KS(0.475)PS(0.036)DS(0.003)GYSYETIGK;T(0.229)T(0.075)KS(0.679)PS(0.012)DS(0.001)GYS(0.003)YETIGK ;; 107.06 0.00075859 810670000 14264.8 12807.5 13222.3 13650.8 15943.8 14379.5 12389 10811.9 14334.1 15716.8 TRUE FALSE FALSE 12592.70177 13202.08389 13937.13753 14207.53863 14767.65764 14105.235 12866.84788 12042.68299 13743.24233 15623.31577 0.806019794 0.845024455 0.892072959 0.909380495 0.945231976 0.902832356 0.823567037 0.770814798 0.879662328 1 13.93141305 -9.46241845 1.186577019 1.000346716 0.860752846 0.094787902 0.061603349 0.34581372 0.867585603 0.039526106 0.009666251 3.45E-10 9.46241845 -0.13959387 REDS(ph)APPSSVAR ddPTM_HeLa_CUDC101_4h_R1 2 REDSAPPSSVAR 12 1 Q9BZE4-3;Q9BZE4-2;Q9BZE4 Q9BZE4-3 GTPBP4 Nucleolar GTP-binding protein 1 1 0 REDS(1)APPSSVAR;REDS(1)APPSSVAR ; 66.289 0.034518 9432600 1463.59 1340.67 1570.49 1436.69 1334.37 1741.74 1450.24 1177.37 1586.52 1834.57 TRUE FALSE FALSE 1292.030199 1381.974454 1655.39544 1495.284428 1235.936184 1708.519211 1506.176243 1311.397042 1521.122974 1823.657896 0.708482771 0.757803564 0.907733541 0.819936914 0.677723704 0.93686388 0.825909424 0.719102549 0.834105441 1 10.8326194 -9.461880993 1.184154619 1.000596739 0.790556931 0.132599128 0.093459916 0.333660047 0.833190789 0.057327313 0.014002317 3.45E-10 9.461880993 -0.210039808 SSSSSGVPYS(ph)PAIPNKR ddPTM_HeLa_CUDC101_4h_R1 2 SSSSSGVPYSPAIPNKR 17 1 A0A0A0MRE1;B4DJ07;A0A0A0MSB8;Q9UPT5-4;Q9UPT5-2;Q9UPT5-5;Q9UPT5-1;Q9UPT5-6;Q9UPT5 A0A0A0MRE1 EXOC7 Exocyst complex component 7 1 0 SSSSSGVPYS(1)PAIPNKR;SSSSSGVPYS(1)PAIPNKR ; 109.77 0.00058743 171071000 7263.3 5754.5 6406.9 5617.5 6889.3 6103.9 5893.8 6028.7 6345.6 5907.9 TRUE FALSE FALSE 6411.906984 5931.789324 6753.276394 5846.605931 6381.090064 5987.478277 6121.12584 6714.982839 6084.031682 5872.759548 1.091804786 1.010051455 1.149932385 0.995546622 1.086557352 1.019534042 1.042291241 1.143411847 1.035974933 1 12.51982285 -9.461737237 1.125730463 0.998969459 1.066786415 0.116760589 0.051025286 0.625832159 1.383398911 0.034097883 0.007913134 3.45E-10 9.461737237 0.067816956 ESNYFGLS(ph)PEER ddPTM_HeLa_CUDC101_4h_R1 2 ESNYFGLSPEER 12 0 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 ESNYFGLS(1)PEER;ESNYFGLS(1)PEER ; 121.92 0.003051 52177000 3041.1 3129 2772.8 2487.9 3310.4 3104.3 2802.4 2333.4 3399.5 3416.9 TRUE FALSE FALSE 2684.626868 3225.400781 2922.705955 2589.367316 3066.198387 3045.09065 2910.489507 2599.024824 3259.371171 3396.576127 0.790392079 0.94960356 0.860485926 0.762346321 0.902732126 0.89651771 0.856889231 0.765189628 0.959604923 1 11.72986547 -9.461549932 1.101513111 1.003238504 0.846569489 0.440778378 0.058893731 0.361165417 0.757225056 0.045083569 0.010235222 3.46E-10 9.461549932 -0.156669015 LWS(ph)S(ph)LT(ph)LLGS(ph)Y(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 LWSSLTLLGSYK 12 0 O95059 O95059 RPP14 Ribonuclease P protein subunit p14 5 0 LWS(1)S(1)LT(1)LLGS(1)Y(1)K 44.309 0.0033764 0 666.31 454.68 500.16 527.2 553.53 650.06 520.63 538.95 551.67 422.04 TRUE FALSE FALSE 588.2061519 468.6881519 527.2001625 548.7014948 512.6971947 637.6611886 540.7108735 600.3018895 528.9299291 419.5296873 1.402060854 1.117175175 1.256645664 1.307896703 1.222076078 1.519942945 1.288850086 1.430892515 1.260768773 1 8.712629094 -9.461396937 0.838608953 0.967453 1.321112183 0.128224055 0.133773604 0.477424395 0.505834955 0.118438959 0.020410004 3.46E-10 9.461396937 0.353659182 IRAEEEDLAAVPFLAS(ph)DNEEEEDEKGNSGSLIR ddPTM_HeLa_CUDC101_4h_R1 2 IRAEEEDLAAVPFLASDNEEEEDEKGNSGSLIR 33 2 O95714;A0A3B3IRP6;A0A0J9YVP0 O95714 HERC2 E3 ubiquitin-protein ligase HERC2 1 0 IRAEEEDLAAVPFLAS(1)DNEEEEDEKGNSGSLIR;IRAEEEDLAAVPFLAS(1)DNEEEEDEKGNSGSLIR ; 133.13 3.52E-23 78004000 5362.9 3831.7 3604.4 3525.6 4804.3 4417.2 3836.6 3996.2 4045.4 2825.4 TRUE FALSE FALSE 4734.268992 3949.750135 3799.264767 3669.389207 4449.896361 4332.94927 3984.578947 4451.111255 3878.6469 2808.594395 1.685636416 1.406308487 1.352728174 1.306485982 1.584385545 1.542746534 1.418709285 1.584818108 1.380992181 1 11.45563258 -9.461316011 1.154255966 0.995506513 1.495940439 0.243251012 0.159206994 0.226391904 0.531774574 0.091830889 0.021875971 3.46E-10 9.461316011 0.500433926 SES(ph)PKEPEQLR ddPTM_HeLa_CUDC101_4h_R1 1 SESPKEPEQLR 11 1 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.028)ES(0.972)PKEPEQLR 79.07 0.023251 4756500000 8799.3 8109.3 7724 7863.1 7002.3 7966.3 7248.8 8011.2 8777.9 9759.1 TRUE FALSE FALSE 7767.859393 8359.137921 8141.582804 8183.791205 6485.75428 7814.3561 7528.388644 8923.162626 8416.071247 9701.052439 0.800723369 0.861673305 0.839247376 0.843598285 0.668561924 0.805516324 0.776038341 0.919813874 0.867542084 1 13.24392555 -9.460869188 0.515782894 1.053902081 0.803502617 0.206406272 0.074210707 0.983303229 0.318347509 0.127373822 0.015450695 3.46E-10 9.460869188 -0.250399465 AGEPNS(ph)PDAEEANS(ph)PDVTAGCDPAGVHPPR ddPTM_HeLa_CUDC101_4h_R1 6 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 2 0 AGEPNS(1)PDAEEANS(0.999)PDVT(0.001)AGCDPAGVHPPR;AGEPNS(0.985)PDAEEANS(1)PDVT(0.015)AGCDPAGVHPPR;AGEPNS(0.959)PDAEEANS(0.904)PDVT(0.137)AGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR ;;;;; 156.72 4.55E-16 953515800 11156.49 9526.91 9159.95 8651.45 10809.35 10584.58 9104 9160.46 11135.32 8506 TRUE FALSE FALSE 9848.743154 9820.422805 9655.164604 9004.293526 10011.96579 10382.69677 9455.14433 10203.24974 10676.3174 8455.405934 1.164786556 1.161437178 1.141892498 1.064915581 1.184090494 1.227935933 1.118236594 1.206713175 1.26266172 1 13.0456583 -9.460727259 0.530304479 0.956626486 1.162305743 0 0.093311883 0.805607596 0.277955533 0.087353981 0.01071572 3.46E-10 9.460727259 0.205679257 AAQGDVELLS(ph)HLPDQR ddPTM_HeLa_CUDC101_4h_R1 1 AAQGDVELLSHLPDQR 16 0 H0YG18;Q96KJ4 H0YG18 MSLNL Mesothelin-like protein 1 0 AAQGDVELLS(1)HLPDQR 84.94 0.0077744 11716000 2879.7 1968.2 1945.5 1914.2 2048.8 2385.9 2494.5 2018.2 2293.6 1424.5 TRUE FALSE FALSE 2542.145931 2028.837909 2050.679615 1992.26935 1897.664106 2340.392933 2590.713701 2247.94373 2199.056837 1416.027011 1.795266554 1.432767803 1.448192442 1.406943042 1.340132703 1.65278834 1.829565172 1.587500601 1.552976617 1 10.46763307 -9.46033331 1.145302864 0.993787892 1.576762921 0.005244054 0.227613718 0.274843977 0.633828304 0.129449529 0.030641058 3.46E-10 9.46033331 0.58297503 LQELNAHIVVSDPEDITDCPRT(ph)PDTPNNDPR ddPTM_HeLa_CUDC101_4h_R1 2 LQELNAHIVVSDPEDITDCPRTPDTPNNDPR 31 1 Q16513-3;Q16513-2;Q16513;B1AL79 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 LQELNAHIVVS(0.004)DPEDIT(0.281)DCPRT(0.363)PDT(0.353)PNNDPR;LQELNAHIVVS(0.088)DPEDIT(0.221)DCPRT(0.567)PDT(0.124)PNNDPR ; 82.089 2.71E-07 29487000 3216.7 2823.8 2560.8 2972.8 3326.5 3261.6 3123.4 3224.9 3342.5 1032.39 TRUE FALSE FALSE 2839.643302 2910.797931 2699.244594 3094.043634 3081.110722 3199.390414 3243.870584 3592.009581 3204.720735 1026.249298 2.7670112 2.836345843 2.630203595 3.014904506 3.002302391 3.117556737 3.160899198 3.500133531 3.12275072 1 10.00316552 -9.459414476 0.317955334 1.66E-18 3.264041176 0 0.677918698 0.494131813 0.059602774 0.593160497 0.077600271 3.47E-10 9.459414476 3.264041176 RNVPQEESLEDS(ph)DVDADFK ddPTM_HeLa_CUDC101_4h_R1 1 RNVPQEESLEDSDVDADFK 19 1 O00505 O00505 KPNA3 Importin subunit alpha-4 1 0 RNVPQEESLEDS(1)DVDADFK 154.95 1.50E-05 10501000 2338.4 1685.3 1832.5 1855.9 1648.3 1670.3 1992.8 1962 1773.8 1433.9 TRUE FALSE FALSE 2064.296297 1737.222095 1931.570493 1931.591624 1526.708193 1638.44181 2069.662964 2185.346149 1700.683213 1425.371099 1.448251826 1.218785828 1.35513516 1.355149985 1.071095235 1.149484377 1.452016927 1.533176975 1.193151183 1 10.47712186 -9.459002308 1.149112703 0.996895916 1.325062141 0.241047798 0.14670992 0.396452061 0.922149815 0.105167041 0.025029081 3.48E-10 9.459002308 0.328166226 (ac)SDEFS(ph)LADALPEHSPAK ddPTM_HeLa_CUDC101_4h_R1 2 SDEFSLADALPEHSPAK 17 0 Q8NDC0 Q8NDC0 MAPK1IP1L MAPK-interacting and spindle-stabilizing protein-like 1 0 S(0.019)DEFS(0.801)LADALPEHS(0.18)PAK;S(0.263)DEFS(0.737)LADALPEHSPAK ; 151.73 1.39E-86 1243238500 5901.2 5960 4476.8 4585.4 5242.8 5225.5 4887.9 4780.6 5769.9 6561.8 TRUE FALSE FALSE 5209.470282 6143.620536 4718.82935 4772.412432 4856.049089 5125.832294 5076.42794 5324.80418 5532.06228 6522.770122 0.798659187 0.941872919 0.723439468 0.731654242 0.744476503 0.785836722 0.778262586 0.816340923 0.848115475 1 12.67126907 -9.458919177 0.3683856 1.09159604 0.767062718 0.285085941 0.072811478 1.372513242 0.218233046 0.181934234 0.022058258 3.48E-10 9.458919177 -0.324533323 S(ph)HTSEGAHLDITPNSGAAGNSAGPK ddPTM_HeLa_CUDC101_4h_R1 4 SHTSEGAHLDITPNSGAAGNSAGPK 25 0 Q92597;E5RJY1;E7ESM1;Q92597-3;Q92597-2 Q92597 NDRG1 Protein NDRG1 1 0 S(0.662)HT(0.169)S(0.169)EGAHLDITPNSGAAGNSAGPK;S(0.723)HT(0.213)S(0.064)EGAHLDITPNSGAAGNSAGPK;S(0.669)HT(0.165)S(0.165)EGAHLDITPNSGAAGNSAGPK;S(0.444)HT(0.444)S(0.111)EGAHLDITPNSGAAGNSAGPK ;;; 135.63 6.90E-11 150622000 26613.5 21225.2 8630 11908.1 20407 17410.8 20675.4 29127.2 15217.2 9014.7 TRUE FALSE FALSE 23493.90587 21879.12325 9096.563904 12393.76379 18901.61627 17078.718 21472.8571 32442.92271 14589.94058 8961.080163 2.621771644 2.441572093 1.015119131 1.383065832 2.109301102 1.905877158 2.396235355 3.620425453 1.628145303 1 13.12945693 -9.458724457 1.164346315 0.992640754 2.172871361 0.183738978 0.692354695 0.523761232 1.257659464 0.501935068 0.12111471 3.48E-10 9.458724457 1.180230607 HARPPDPPASAPPDSSSNS(ph)ASQDTK ddPTM_HeLa_CUDC101_4h_R1 1 HARPPDPPASAPPDSSSNSASQDTK 25 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 HARPPDPPASAPPDS(0.015)S(0.015)S(0.013)NS(0.65)AS(0.282)QDT(0.026)K 50.534 0.015472 3095300 1407.8 1332.9 1288.8 1353.7 1333 1458.2 1496.8 1766.8 1394.2 1872.7 TRUE FALSE FALSE 1242.779818 1373.965069 1358.476426 1408.909737 1234.667246 1430.387265 1554.532077 1967.92537 1336.730486 1861.561097 0.667600875 0.738071434 0.72975119 0.756843135 0.663242935 0.76838051 0.835069061 1.057137138 0.718069629 1 10.86229725 -9.458265156 1.194894551 0.999927923 0.761160691 0 0.136434368 0.389490594 0.995213135 0.076161799 0.018876486 3.48E-10 9.458265156 -0.238767232 ITVQAS(ph)PGLDR ddPTM_HeLa_CUDC101_4h_R1 2 ITVQASPGLDR 11 0 Q16584;Q16584-2 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 0 ITVQAS(1)PGLDR;ITVQAS(1)PGLDR ; 106.55 0.007984 37084000 5272.5 5140.9 4925.8 4673.5 5182.9 4682.2 4665.5 4207.8 5654.7 5691.6 TRUE FALSE FALSE 4654.465543 5299.285036 5192.103648 4864.105531 4800.567793 4592.894836 4845.449898 4686.798943 5421.610873 5657.74611 0.822671334 0.936642425 0.91769824 0.859724957 0.848494736 0.811788784 0.856427596 0.828386225 0.958263373 1 12.46601172 -9.457785921 0.844312252 1.013879494 0.858420788 0.58541725 0.039459211 0.408021658 0.440736554 0.044605793 0.007781949 3.49E-10 9.457785921 -0.155458706 T(ph)SSTNEDEDLNPEQK ddPTM_HeLa_CUDC101_4h_R1 1 TSSTNEDEDLNPEQK 15 0 Q99081;Q99081-3;B4DGI9;Q99081-4;Q99081-2;B4DZP2;F5GY10 Q99081 TCF12 Transcription factor 12 1 0 T(0.523)S(0.156)S(0.247)T(0.074)NEDEDLNPEQK 182.91 5.46E-10 58637000 5361.6 4917.9 4734.1 4822.4 4815.3 5310.9 5076.9 5036.6 4991.4 5753.1 TRUE FALSE FALSE 4733.121376 5069.41467 4990.039766 5019.078316 4460.084912 5209.603431 5272.717734 5609.946185 4785.652379 5718.880305 0.827630781 0.886434826 0.872555378 0.877633041 0.779887788 0.910948149 0.921984279 0.980951845 0.836816321 1 12.481517 -9.457753288 1.174986935 1.000458201 0.875592851 0 0.071306809 0.371423173 0.911897867 0.037757853 0.009208633 3.49E-10 9.457753288 -0.12486535 ASWESLDEEWR ddPTM_HeLa_CUDC101_4h_R1 1 ASWESLDEEWR 11 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 0 0 140.17 0.007777 2246000 523.34 532.1 589.85 407.37 526.92 558.5 498.68 769.27 536.08 643.23 FALSE FALSE TRUE 461.9948785 548.4933703 621.7390752 423.9843094 488.0501614 547.847543 517.9142546 856.8405873 513.9825555 639.4040394 0.722539818 0.857819683 0.972372767 0.663092948 0.763289143 0.856809637 0.809995281 1.340061267 0.803846275 1 9.320584048 -4.258717089 24.7979718 0.848153985 1.340061464 0.700687296 0.099651233 123.0837328 1121126.713 0.017042103 0.157485714 5.51E-05 4.258717089 0.491907479 SAAQAAAQTNS(ph)NAAGK ddPTM_HeLa_CUDC101_4h_R1 3 SAAQAAAQTNSNAAGK 16 0 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 SAAQAAAQT(0.001)NS(0.999)NAAGK;SAAQAAAQT(0.106)NS(0.894)NAAGK;SAAQAAAQT(0.001)NS(0.999)NAAGK ;; 251.74 4.92E-56 25504200 7842.2 7251.8 7329.8 6384.9 7507.7 6606.9 7364.1 7954.1 6795.1 8222.4 TRUE FALSE FALSE 6922.949204 7475.219362 7726.071159 6645.30382 6953.871928 6480.88439 7648.135804 8859.562592 6515.003102 8173.492799 0.847000098 0.914568538 0.945259432 0.813031097 0.850783392 0.79291492 0.935724297 1.083938386 0.797089232 1 12.99673701 -9.457582325 1.146308783 1.00108754 0.888876215 0 0.100688734 0.641739322 1.484802872 0.058117702 0.013827717 3.49E-10 9.457582325 -0.112211325 T(ph)LYGFGG ddPTM_HeLa_CUDC101_4h_R1 1 TLYGFGG 7 0 P62805 P62805 HIST1H4A Histone H4 1 0 T(1)LYGFGG 71.379 0.020467 5081800 5476.7 4689.5 2036.3 4216.6 2487.9 5550.6 4864.9 2137.6 1253.2 1970.9 TRUE FALSE FALSE 4834.729528 4833.977937 2146.388537 4388.571174 2304.372574 5444.731553 5052.540823 2380.935744 1201.542566 1959.176999 2.467734937 2.467351311 1.095556215 2.240007501 1.176194175 2.779091198 2.57890983 1.215273426 0.61328944 1 10.93603203 -9.457089357 1.187087423 0.99887239 2.057461824 0.361529514 0.614395197 0.468165308 1.178226053 0.404744856 0.099836182 3.49E-10 9.457089357 1.058589434 QYMFPET(ph)LT(ph)IS(ph)EK ddPTM_HeLa_CUDC101_4h_R1 1 QYMFPETLTISEK 13 0 Q10469 Q10469 MGAT2 "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" 3 0 QY(0.014)MFPET(0.992)LT(0.994)IS(1)EK 49.149 0.039154 7011400 255.35 353.42 256.82 363.51 309.53 382.76 316.4 175.43 396.11 505.36 TRUE FALSE FALSE 225.4182601 364.3084513 270.704466 378.335509 286.6965886 375.4594907 328.603654 195.4002421 379.7821781 502.3540962 0.448723842 0.72520251 0.53887182 0.75312516 0.570706183 0.747400078 0.65412755 0.388969143 0.75600494 1 8.97256083 -9.457019822 1.146378375 1.003859099 0.599452325 0.345079483 0.136890432 0.262112369 0.606685799 0.085527975 0.020368301 3.49E-10 9.457019822 -0.404406774 RASS(ph)LNFLNK ddPTM_HeLa_CUDC101_4h_R1 1 RASSLNFLNK 10 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 RAS(0.09)S(0.91)LNFLNK 91.307 0.014143 45022000 6177.6 5023.2 4083.3 4719.7 5160.2 5191 5004.4 4381.8 5086.5 3875.3 TRUE FALSE FALSE 5453.471093 5177.958838 4304.055549 4912.189766 4779.542327 5091.990324 5197.421384 4880.6064 4876.832317 3852.249543 1.415658833 1.344138997 1.117283681 1.27514838 1.24071462 1.321822552 1.349191252 1.266949699 1.26596999 1 11.91148545 -9.456964176 1.1717713 0.998734801 1.300437492 0.084906485 0.109796636 0.244395784 0.596289596 0.059949956 0.014598299 3.49E-10 9.456964176 0.301702691 EKDVADGNVS(ph)DFDNEEEEQSVPPK ddPTM_HeLa_CUDC101_4h_R1 1 EKDVADGNVSDFDNEEEEQSVPPK 24 1 O43156 O43156 TTI1 TELO2-interacting protein 1 homolog 1 0 EKDVADGNVS(0.996)DFDNEEEEQS(0.004)VPPK 48.852 0.025622 6434300 797.68 882.47 695.8 559.04 859.45 736.09 777.41 782.88 1033.1 920.5 TRUE FALSE FALSE 704.1771596 909.6578547 733.4170527 581.8400676 796.0500858 722.0503097 807.3949641 871.9998947 990.5151807 915.0248251 0.769571645 0.994134618 0.801526945 0.635873532 0.86997649 0.789104612 0.882374928 0.952979494 1.082500883 1 9.837667075 -9.456904032 1.055741906 1.005314218 0.828907672 0.384632209 0.099235538 0.560868063 1.061899138 0.07735329 0.016935856 3.49E-10 9.456904032 -0.176406547 IEDVTPIPSDS(ph)TRR ddPTM_HeLa_CUDC101_4h_R1 3 IEDVTPIPSDSTRR 14 1 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 1 0 IEDVTPIPS(0.027)DS(0.837)T(0.136)RR;IEDVTPIPSDS(0.831)T(0.168)RR;IEDVTPIPS(0.006)DS(0.972)T(0.023)RR ;; 136.26 0.00034211 73248700 12965.9 16127.5 10973.1 12241.4 17461.9 13416.6 11587.7 10722.8 17158.4 17934.6 TRUE FALSE FALSE 11446.05686 16624.36916 11566.33898 12740.6572 16173.77043 13160.70071 12034.64147 11943.44021 16451.12349 17827.9242 0.642029702 0.932490455 0.64877654 0.714646139 0.907215571 0.738207127 0.67504446 0.669928819 0.922772798 1 14.12185111 -9.456854546 1.091670393 1.005845577 0.736544039 0.437459865 0.098754481 0.350872014 0.721223326 0.074862123 0.016964683 3.49E-10 9.456854546 -0.269301538 RFIGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 RFIGSPR 7 1 K7ERJ3;P23443-4;P23443-3;P23443-5;P23443-2;P23443 K7ERJ3 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 0 RFIGS(1)PR;RFIGS(1)PR;RFIGS(1)PR;RFIGS(1)PR ;;; 99.013 0.01229 27953100 13706.2 10365.8 10109.2 11517.7 11088.8 10008.2 9273.3 8372.2 8765.5 7117.2 TRUE FALSE FALSE 12099.58001 10685.15801 10655.73393 11987.44159 10270.80132 9817.31026 9630.974287 9325.257406 8404.18238 7074.866578 1.71022024 1.510298165 1.506139206 1.694369987 1.451730743 1.387631859 1.361294122 1.318082441 1.187892703 1 12.78848723 -9.456699657 1.180571742 0.998848391 1.512371194 0.571771796 0.134225086 0.238504142 0.592492155 0.099820462 0.024500913 3.49E-10 9.456699657 0.513522802 KRPS(ph)LPSSPSPGLPK ddPTM_HeLa_CUDC101_4h_R1 1 KRPSLPSSPSPGLPK 15 2 O43294-2;O43294;H3BSN4;H3BQC4 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 KRPS(0.99)LPS(0.008)S(0.002)PSPGLPK 78.401 0.019598 62452000 2106.5 2140.4 1989.2 1900.4 1862.2 1945.2 1775.5 1962.9 1871.6 2463.3 TRUE FALSE FALSE 1859.579263 2206.343187 2096.742169 1977.906526 1724.829216 1908.098551 1843.98163 2186.348602 1794.451856 2448.648182 0.75943097 0.901045403 0.856285596 0.807754475 0.704400587 0.779245694 0.753061074 0.892879842 0.732833679 1 11.25776979 -9.45553518 0.760499994 1.026346312 0.800063731 0 0.102348656 0.51178759 0.425066351 0.076753536 0.012183661 3.50E-10 9.45553518 -0.226282581 VSEFNVSS(ph)EGSGEK ddPTM_HeLa_CUDC101_4h_R1 1 VSEFNVSSEGSGEK 14 0 Q9BVJ6-3;Q9BVJ6 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 VSEFNVS(0.392)S(0.603)EGS(0.004)GEK 99.451 0.0080126 6357200 1486.5 1353.3 1156.9 1400.5 1854.8 1501 1114.4 1120.7 1988.3 1537.3 TRUE FALSE FALSE 1312.254723 1394.993569 1219.445513 1457.618443 1717.975099 1472.370926 1157.382781 1248.275958 1906.341432 1528.156071 0.858717737 0.912860666 0.797984929 0.953841346 1.124214425 0.963495126 0.757372106 0.816851094 1.247478231 1 10.57757618 -9.455087578 1.18106284 1.000176317 0.897978132 0.230675744 0.126724818 0.885278907 2.202797622 0.073687176 0.018138685 3.51E-10 9.455087578 -0.102198185 ATAAFSNVGTAISK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 ATAAFSNVGTAISKK 15 1 E9PNK6;E9PPQ1;J3KNE7;Q16890-4;Q16890-3;Q16890-2;Q16890-5;Q16890 E9PNK6 TPD52L1 Tumor protein D53 0 1 ATAAFSNVGTAISK(1)K 195.87 3.10E-15 740160 160.41 263.91 230.43 426.36 322.78 273.01 348.3 380.93 154.42 280.1 FALSE TRUE FALSE 141.606983 272.0407543 242.8877428 443.7488037 298.9691625 267.8027891 361.7340477 424.2935314 148.0547422 278.4339527 0.508583747 0.977038725 0.872335218 1.593730934 1.073752535 0.961818006 1.299173625 1.523857013 0.531740978 1 8.121191337 -6.435609992 6.822992647 0.783706997 1.260725854 0.554645019 0.230136635 0.180916185 12.09141727 0.039563899 0.060472067 3.67E-07 6.435609992 0.477018858 ATAGDTHLGGEDFDNR ddPTM_HeLa_CUDC101_4h_R1 4 ATAGDTHLGGEDFDNR 16 0 P17066;P48741;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;Q53FA3;P34931 P17066;A0A0G2JIW1;Q53FA3 HSPA6;HSPA7;HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 0 0 ;;; ;;; 167.92 3.50E-06 867480000 33766.4 30967.2 31875.5 31855.7 34668.5 28648.1 26751.6 32131.6 29588.2 30920 FALSE FALSE TRUE 29808.35378 31921.26273 33598.78595 33154.91314 32111.07382 28101.68522 27783.41817 35789.33146 28368.56187 30736.08646 0.969816174 1.038559765 1.093138061 1.078696638 1.044735278 0.914289633 0.9039348 1.164407561 0.922972477 1 14.90764586 -4.238471227 23.9310885 0.997436219 1.164407893 0.379131704 0.06454503 2970.705729 3095168.626 0.008897486 0.612530569 5.77E-05 4.238471227 0.166971674 TGVLLPSSPEAEVPGKLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 TGVLLPSSPEAEVPGKLSPK 20 1 O60285 O60285 NUAK1 NUAK family SNF1-like kinase 1 1 0 TGVLLPSSPEAEVPGKLS(1)PK;TGVLLPSSPEAEVPGKLS(1)PK ; 106.88 0.00011196 34197000 3645.3 3500.7 3623.2 3325.9 3912.6 3149.9 3289.6 3680.4 3481.8 4292.8 TRUE FALSE FALSE 3218.00346 3608.552418 3819.081152 3461.544578 3623.975293 3089.820906 3416.480974 4099.361859 3338.27873 4267.266235 0.75411359 0.845635641 0.89497138 0.81118552 0.84924987 0.724075025 0.800625221 0.960652941 0.782299146 1 12.05909641 -9.455071842 1.146162011 1.001646568 0.821081636 0 0.09203055 0.323313686 0.748612141 0.047055906 0.011237871 3.51E-10 9.455071842 -0.180564932 SSS(ph)LDMNR ddPTM_HeLa_CUDC101_4h_R1 2 SSSLDMNR 8 0 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 S(0.001)S(0.021)S(0.978)LDMNR;S(0.001)S(0.001)S(0.998)LDMNR ; 167.12 0.00016871 614450000 8830.5 6980.2 6759.5 7148.1 8201.4 7177.5 7390.3 7124.4 6782.6 6663 TRUE FALSE FALSE 7795.402176 7195.251688 7124.939016 7439.630415 7596.399061 7040.601146 7675.346347 7935.412898 6503.018357 6623.36818 1.176954378 1.086343306 1.075727458 1.123239749 1.146908771 1.062994077 1.158828279 1.198093279 0.981829513 1 12.69334934 -9.454734662 1.114169245 0.997878089 1.129742519 0.623521391 0.042440386 0.31356645 0.678050723 0.032981159 0.007656858 3.51E-10 9.454734662 0.13186443 NSQEDS(ph)EDSEDKDVK ddPTM_HeLa_CUDC101_4h_R1 3 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 NS(0.004)QEDS(0.995)EDS(0.001)EDKDVK;NSQEDS(1)EDSEDKDVK;NS(0.001)QEDS(0.965)EDS(0.034)EDKDVK ;; 174.4 2.26E-06 2884545000 10612.6 10740.1 10014.3 10256.6 10808.6 10521.6 9691.4 9178.8 12195.6 12640.8 TRUE FALSE FALSE 9368.607116 11070.98975 10555.70335 10674.90848 10011.27111 10320.91801 10065.20054 10223.67749 11692.89221 12565.61196 0.745575078 0.881054563 0.840046898 0.849533514 0.796719741 0.821362146 0.801011568 0.813623525 0.930546976 1 13.61719331 -9.454711891 1.124521302 1.002595541 0.813921946 0.678023644 0.039433681 0.191484378 0.423466721 0.028915765 0.006776892 3.51E-10 9.454711891 -0.188673596 ATASSSAQEMEQQLAER ddPTM_HeLa_CUDC101_4h_R1 1 ATASSSAQEMEQQLAER 17 0 J3QT73;A0A087X1P5;J3KQ34;Q9H9Q2-2;Q9H9Q2 J3QT73 COPS7B COP9 signalosome complex subunit 7b 0 0 194.86 6.82E-24 0 637.86 573.1 678.48 576.32 722.97 727.96 573.5 712.2 820.81 775.6 FALSE FALSE TRUE 563.0910177 590.7565317 715.1606811 599.8248207 669.6379435 714.0753759 595.6200871 793.2739692 786.9758644 770.9866967 0.730351146 0.766234404 0.927591467 0.77799633 0.86854669 0.926183784 0.772542626 1.028907467 1.020738578 1 9.590562157 -4.240608418 23.31684963 0.85883599 1.028907891 0.199729374 0.097243034 2731.690803 3057559.989 0.015038719 0.772799503 5.75E-05 4.240608418 0.170071902 ATATISAK(ac)PQITNPK ddPTM_HeLa_CUDC101_4h_R1 2 ATATISAKPQITNPK 15 1 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 0 1 ; ATATISAK(1)PQITNPK;ATATISAK(1)PQITNPK 314.29 8.11E-122 3564800 2173.9 2107.42 2120.08 1447.73 2257.5 2062.7 2053.99 1954.41 2110.56 2309.1 FALSE TRUE FALSE 1919.078737 2172.347112 2234.697938 1506.774687 2090.968723 2023.357434 2133.213082 2176.892134 2023.561823 2295.365371 0.836066781 0.946405805 0.973569597 0.656442197 0.910952456 0.881496889 0.929356655 0.948385892 0.881585934 1 11.1645081 -9.460836609 1.105682449 1.002386343 0.880077657 0 0.092739945 0.663181673 1.403776009 0.064699552 0.014762122 3.46E-10 9.460836609 -0.122308686 ATAVMPDGQFK ddPTM_HeLa_CUDC101_4h_R1 2 ATAVMPDGQFK 11 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 ; ; 134.26 0.0083882 225705000 9823.6 8783.3 8550.7 8038.2 8514.8 7595.6 8283.2 8438.9 8064.1 8475.3 FALSE FALSE TRUE 8672.0925 9053.903062 9012.976706 8366.03254 7886.680168 7450.726585 8602.685799 9399.550265 7731.694385 8424.888539 1.029342105 1.074661465 1.069803673 0.993014032 0.936116856 0.884370939 1.021103812 1.115688382 0.917720674 1 13.04044188 -6.017777011 24.42445936 1.023892011 0.98165285 0.032792465 0.069005436 1068.971673 1468699.671 0.009509966 0.015985908 9.60E-07 6.017777011 -0.042239161 KQQQEPTGEPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 KQQQEPTGEPSPK 13 1 F5H2U8;F5H2A4;F5H6H0;P52926-3;P52926-6;P52926-4;P52926-5;P52926-2;P52926 F5H2U8 HMGA2 High mobility group protein HMGI-C 1 0 KQQQEPT(0.002)GEPS(0.998)PK;KQQQEPT(0.017)GEPS(0.983)PK ; 89.877 0.0097719 36009700 11803.3 11770.2 11592.7 11620.1 11696.7 11733.2 9852.2 9082.6 12249.9 13416.4 TRUE FALSE FALSE 10419.73507 12132.82591 12219.43643 12094.0179 10833.85774 11509.40876 10232.20265 10116.52647 11744.95394 13336.59866 0.781288793 0.909739149 0.916233347 0.906829261 0.812340389 0.86299431 0.767227306 0.758553716 0.880655873 1 13.70310315 -9.454671212 1.073620447 1.004229251 0.838002964 0.192234672 0.066791715 0.373611949 0.7379756 0.048834051 0.010916129 3.51E-10 9.454671212 -0.166226287 S(ph)PQEGPTWSR ddPTM_HeLa_CUDC101_4h_R1 1 SPQEGPTWSR 10 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 S(1)PQEGPTWSR 100.38 0.015845 11938000 931.17 676.35 839.65 677.08 846.44 684.62 778.12 717.41 759.86 648.34 TRUE FALSE FALSE 822.0196642 697.1875418 885.0440188 704.694249 783.9998075 671.5620142 808.1323491 799.0770545 728.5382492 644.4836448 1.27547017 1.081776935 1.373260634 1.093424565 1.216477429 1.042015604 1.253922199 1.239871734 1.130421625 1 9.331999937 -9.454474825 1.135159886 0.997703495 1.200958388 0.167798636 0.102810752 0.403049147 0.911983869 0.0657852 0.015572027 3.51E-10 9.454474825 0.203254893 KLPPPPPQAPPEEENES(ph)EPEEPSGVEGAAFQSR ddPTM_HeLa_CUDC101_4h_R1 1 KLPPPPPQAPPEEENESEPEEPSGVEGAAFQSR 33 1 R4GMQ1;O60341 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 1 0 KLPPPPPQAPPEEENES(0.948)EPEEPS(0.051)GVEGAAFQSR 54.997 0.0050076 11915000 1290.7 1004.1 1047.2 904.8 944.36 996.89 950.25 829.65 1007.9 676.88 TRUE FALSE FALSE 1139.406103 1035.035131 1103.8148 941.7016549 874.6964442 977.8759842 986.9014608 924.0940024 966.3539354 672.8538877 1.693393058 1.538276214 1.640497023 1.399563371 1.299979773 1.453325903 1.466739628 1.373394758 1.436201757 1 9.394149443 -9.45425598 1.186793603 0.999820024 1.500442539 0.104105077 0.172794914 0.225735464 0.568398181 0.092150813 0.022823046 3.51E-10 9.45425598 0.500622515 MPVS(ph)PISQGASWAQEDQQDADEDRR ddPTM_HeLa_CUDC101_4h_R1 1 MPVSPISQGASWAQEDQQDADEDRR 25 1 I3L2T9;Q8NB16-2;Q8NB16 I3L2T9 MLKL Mixed lineage kinase domain-like protein 1 0 MPVS(0.434)PIS(0.434)QGAS(0.132)WAQEDQQDADEDRR 62.303 0.0022553 5131700 359.13 257.34 320.01 291.47 205.88 307.3 131.02 323.76 240.21 172.59 TRUE FALSE FALSE 317.0333258 265.2683404 337.3107086 303.3574064 190.6926426 301.4387645 136.0734853 360.6155297 230.3084421 171.563427 1.847907397 1.546182336 1.966099153 1.768193908 1.111499379 1.757010627 0.793138069 2.101937085 1.342409896 1 7.422598229 -9.454136024 1.182388436 0.999262235 1.612477893 0.152934468 0.386185686 0.494581235 1.234405043 0.246986305 0.060954573 3.51E-10 9.454136024 0.613215658 DCNDTLEEENTNLET(ph)PTKR ddPTM_HeLa_CUDC101_4h_R1 2 DCNDTLEEENTNLETPTKR 19 1 A0A087WY59;Q9BZE2 A0A087WY59 PUS3 tRNA pseudouridine synthase;tRNA pseudouridine(38/39) synthase 1 0 DCNDTLEEENTNLET(0.999)PT(0.001)KR;DCNDTLEEENTNLET(0.933)PT(0.067)KR ; 165.58 5.73E-05 28314000 3070.4 2642.7 2074.42 2152.41 2953.5 2565.7 1988.43 1431.5 2756.6 1587.76 TRUE FALSE FALSE 2710.492366 2724.118455 2186.56942 2240.194583 2735.626189 2516.763547 2065.124411 1594.456174 2642.971781 1578.315933 1.717331942 1.725965251 1.385381326 1.419357517 1.733256398 1.594587937 1.308435382 1.010226242 1.674551797 1 10.6241703 -9.453841983 1.200669603 1.001306699 1.516478102 0 0.297491917 0.370544519 0.959348304 0.156226298 0.0391698 3.52E-10 9.453841983 0.515171403 KGPSTPYTK(ac)SK ddPTM_HeLa_CUDC101_4h_R1 1 KGPSTPYTKSK 11 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 0 1 KGPSTPYTK(1)SK 107.17 0.0094603 3654000 924.32 1195.1 1351.6 2555.3 3189.2 3398.1 2698.9 2607.5 222.21 223.91 FALSE TRUE FALSE 815.9726108 1231.919614 1424.671584 2659.516179 2953.93907 3333.286904 2802.997477 2904.32726 213.0504097 222.5781734 3.666004615 5.534772776 6.400769504 11.94868364 13.27146784 14.97580312 12.59331692 13.04857173 0.95719363 1 7.798168315 -6.539945396 0.902971256 1.978482394 13.96760935 0.960007476 1.026538914 0.076947995 0.125336069 0.224937584 0.412632002 2.88E-07 6.539945396 11.98912696 up ATEDGEEDEEMIESIENLEDLK ddPTM_HeLa_CUDC101_4h_R1 2 ATEDGEEDEEMIESIENLEDLK 22 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 0 ; ; 140.8 2.70E-05 4564800 1806.54 1441.03 1481.79 1312.4 1604.87 1515.81 1372.7 1294.9 1641.29 1968.49 FALSE FALSE TRUE 1594.78012 1485.426426 1561.90005 1365.925345 1486.481937 1486.89845 1425.645499 1442.306182 1573.635332 1956.781334 0.815001703 0.75911723 0.798198563 0.698047002 0.759656642 0.759869498 0.728566587 0.737080918 0.804195801 1 10.93426683 -8.678401108 0.409770628 1.040387939 0.729923903 0.33836185 0.064379778 0.228980468 0.070879534 0.030374019 0.008776319 2.10E-09 8.678401108 -0.310464036 ATEDGEEDEEMIESIENLEDLKGHSVR ddPTM_HeLa_CUDC101_4h_R1 1 ATEDGEEDEEMIESIENLEDLKGHSVR 27 1 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 0 225.74 8.72E-40 11278000 4374.3 4389 3997.5 4024.3 5543.2 4322.2 3973.3 4824.3 4502.6 3903 FALSE FALSE TRUE 3861.551185 4524.219888 4213.616942 4188.428349 5134.28918 4239.761236 4126.551512 5373.478812 4317.000922 3879.784782 0.995300359 1.166100735 1.086043989 1.079551723 1.323343811 1.092782583 1.063603201 1.384994043 1.112690823 1 11.92176091 -6.768001501 0.736325841 0.992036284 1.197864856 0.233551688 0.106979301 0.439018112 0.482533156 0.021812507 0.036264823 1.71E-07 6.768001501 0.205828572 QALVGSDS(ph)AEDEKR ddPTM_HeLa_CUDC101_4h_R1 1 QALVGSDSAEDEKR 14 1 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 1 0 QALVGS(0.049)DS(0.951)AEDEKR 67.252 0.02819 9461600 749.94 933.89 681.07 650.16 720.26 925.35 569.76 710.47 1046.7 991.53 TRUE FALSE FALSE 662.03317 962.662044 717.8907043 676.676335 667.1278548 907.7004905 591.7358341 791.347033 1003.554583 985.6323355 0.671683696 0.976694868 0.728355471 0.686540316 0.676852647 0.920932134 0.600361629 0.802882581 1.018183502 1 9.944905777 -9.452948887 0.990003479 1.011934836 0.750926698 0.448463553 0.110720237 0.46697572 0.755280068 0.092552101 0.019088267 3.52E-10 9.452948887 -0.261008137 ATEMVEVGADDDEGGAER ddPTM_HeLa_CUDC101_4h_R1 2 ATEMVEVGADDDEGGAER 18 0 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 0 0 ; ; 297.91 1.06E-122 51428000 2850 1936.91 1844.75 1939.53 2135.8 2066.69 2026.14 1886.23 2263.3 2033.87 FALSE FALSE TRUE 2515.92732 1996.583901 1944.482765 2018.632417 1978.246289 2027.271332 2104.288899 2100.950799 2170.005816 2021.772451 1.24441666 0.987541353 0.961771323 0.99844689 0.978471286 1.002719832 1.040813914 1.039162839 1.073318521 1 10.98140492 -7.155389187 21.70904427 1.115477949 1.000343448 0.380196599 0.060846657 11.34331409 2312.464019 0.015297178 0.018735141 6.99E-08 7.155389187 -0.115134501 TVSS(ph)PIPYTPSPSSSRPISPGLSY(ph)ASHTVGFTPPTSLTR ddPTM_HeLa_CUDC101_4h_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 T(0.025)VS(0.07)S(0.246)PIPY(0.168)T(0.193)PS(0.172)PS(0.14)S(0.16)S(0.09)RPIS(0.215)PGLS(0.21)Y(0.276)AS(0.033)HTVGFTPPTSLTR 69.366 2.17E-07 45387000 396.58 388.49 321.1 367.64 830.52 627.03 474.99 339.13 785.66 750.67 TRUE FALSE FALSE 350.0934936 400.4589164 338.4596373 382.6339483 769.2541942 615.0704475 493.3105234 377.7351884 753.2747623 746.2049815 0.469165313 0.536660739 0.453574615 0.512773243 1.030888581 0.82426473 0.661092509 0.506208345 1.009474315 1 9.543428181 -9.45277424 1.201135623 0.998881664 0.617612166 0.436352887 0.172105967 0.415955443 1.078346039 0.129734528 0.032592863 3.53E-10 9.45277424 -0.381269498 ATEVSK(ac)TPEAR ddPTM_HeLa_CUDC101_4h_R1 2 ATEVSKTPEAR 11 1 Q5H909;Q9UNF1-2;Q9UNF1 Q5H909 MAGED2 Melanoma-associated antigen D2 0 1 ; ATEVSK(1)TPEAR;ATEVSK(1)TPEAR 157.38 0.00013269 2378200 831.76 646.26 624.32 656.35 725.47 643.61 471.48 680.91 742.42 747.47 FALSE TRUE FALSE 734.2623537 666.1705046 658.0726277 683.11879 671.9535234 631.3342116 489.6651415 758.4220421 711.8171334 743.0240152 0.988208105 0.896566586 0.885668046 0.919376462 0.904349671 0.849682108 0.659016575 1.020723458 0.958000171 1 9.53726503 -6.701392214 0.630540162 1.001706745 0.836868371 0.225000623 0.086376429 0.555400017 0.454564233 0.020164053 0.036767728 1.99E-07 6.701392214 -0.164838375 GALLSLIEY(ph)Y(ph)QWDK ddPTM_HeLa_CUDC101_4h_R1 1 GALLSLIEYYQWDK 14 0 D6REK8;F8W7L6;P42262-4;P42262-2;P42262;P42262-3;D6R9Z0 D6REK8 GRIA2 Glutamate receptor 2 2 0 GALLSLIEY(1)Y(1)QWDK 62.891 0.0029902 0 615.41 709.59 485.83 559.57 510.83 497.2 642.39 637.94 605.99 719.33 TRUE FALSE FALSE 543.2725727 731.4516268 512.0954394 582.3916833 473.1470886 487.7167384 667.1671975 710.560511 581.0108357 715.0513932 0.759767169 1.022935741 0.716165921 0.814475279 0.661696618 0.682072286 0.93303391 0.993719497 0.812544163 1 9.481903127 -9.452624322 0.917337983 1.013064818 0.813448143 0 0.132798557 0.804452727 1.074831202 0.117640987 0.022464677 3.53E-10 9.452624322 -0.199616675 LEGPVS(ph)PDVEPGKEETEESK ddPTM_HeLa_CUDC101_4h_R1 4 LEGPVSPDVEPGKEETEESK 20 1 O14686;O14686-3;A0A3B3ISC8 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 LEGPVS(1)PDVEPGKEETEESK;LEGPVS(1)PDVEPGKEETEESK;LEGPVS(1)PDVEPGKEETEESK;LEGPVS(1)PDVEPGKEETEESK ;;; 99.93 0.00044045 188753000 16412.8 13795.9 13564.5 13401.1 13131.5 14125 13251.7 12487.4 15140.6 12346.9 TRUE FALSE FALSE 14488.91646 14220.93533 14297.8379 13947.65478 12162.81541 13855.58916 13762.82251 13908.91514 14516.49806 12273.46009 1.180507889 1.158673693 1.164939454 1.136407719 0.990985046 1.128906523 1.12134821 1.133251344 1.182755144 1 13.58325441 -9.452305942 1.195568773 1.000248274 1.130223513 0 0.074272455 0.344552629 0.883591037 0.036570293 0.009151451 3.53E-10 9.452305942 0.129975239 S(ph)DSDLLTCSPTEDATMGSR ddPTM_HeLa_CUDC101_4h_R1 2 SDSDLLTCSPTEDATMGSR 19 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.996)DS(0.004)DLLTCSPTEDATMGSR;S(0.99)DS(0.01)DLLTCSPTEDATMGSR ; 228.26 9.65E-34 22909000 2043.68 1433.57 1482.53 1442.82 1552.55 1461.7 1400.22 1173.71 1920.27 784.66 TRUE FALSE FALSE 1804.122928 1477.736593 1562.680056 1501.664436 1438.02148 1433.820508 1454.226954 1307.320402 1841.115658 779.9928074 2.312999442 1.894551563 2.003454444 1.925228568 1.843634282 1.838248371 1.864410724 1.676067253 2.360426456 1 9.60731701 -9.452184236 1.166158031 0.996059211 1.953038005 0 0.44459606 0.17370071 0.419760149 0.134604615 0.032858643 3.53E-10 9.452184236 0.956978794 ATGDETGAK(ac)VER ddPTM_HeLa_CUDC101_4h_R1 1 ATGDETGAKVER 12 1 H0Y9Y4;P61247;D6R9B6;D6RAT0 H0Y9Y4 RPS3A 40S ribosomal protein S3a 0 1 ATGDETGAK(1)VER 141.71 0.00027034 259030 0 147.87 0 0 0 0 119.7 0 132.09 121.42 FALSE TRUE FALSE 0 152.4256994 0 0 0 0 124.3168691 0 126.6451943 120.6977884 0 1.262870691 0 0 0 0 1.029984648 0 1.049275185 1 6.915255431 -9.488432195 1.06136278 1.02802013 0.273418892 0.300989792 0.448001521 0.615304126 1.162078675 0.368938386 0.077213968 3.25E-10 9.488432195 -0.754601238 NLNNSNLFS(ph)PVNR ddPTM_HeLa_CUDC101_4h_R1 4 NLNNSNLFSPVNR 13 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 NLNNSNLFS(1)PVNR;NLNNSNLFS(1)PVNR;NLNNS(0.002)NLFS(0.998)PVNR;NLNNSNLFS(1)PVNR ;;; 186.29 4.85E-11 138376000 6130.79 5693.09 5682.67 5485.8 6140.29 6593.1 5873 4008.38 5947.06 6629.7 TRUE FALSE FALSE 5412.14809 5868.487355 5989.892329 5709.534636 5687.33304 6467.347602 6099.523577 4464.677777 5701.91967 6590.26625 0.821233602 0.890478037 0.908899899 0.86635872 0.862989874 0.981348455 0.925535228 0.677465463 0.865203234 1 12.68612104 -9.452128909 1.140596722 1.001260618 0.869507352 0 0.085757078 0.505213488 1.157562029 0.053482639 0.01276759 3.53E-10 9.452128909 -0.131753266 SLS(ph)ELESLK ddPTM_HeLa_CUDC101_4h_R1 1 SLSELESLK 9 0 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 S(0.044)LS(0.955)ELESLK 93.561 0.023778 1641600 1447.6 1687.8 1365.7 1102.6 1434.3 1472 1627.9 1405 1372.4 1905.4 TRUE FALSE FALSE 1277.914522 1739.799117 1439.533873 1147.568794 1328.494547 1443.924053 1690.688648 1564.939521 1315.829091 1894.066596 0.674693554 0.918552242 0.76002284 0.605875631 0.701398013 0.762340699 0.892623655 0.826232575 0.694711101 1 10.88727134 -9.452051063 1.091294061 1.005033923 0.759837072 0 0.129912577 0.384025903 0.790430618 0.074425852 0.016987 3.53E-10 9.452051063 -0.245196851 ATGEGGASDLPEDPDEDAIPIT ddPTM_HeLa_CUDC101_4h_R1 2 ATGEGGASDLPEDPDEDAIPIT 22 0 O15541 O15541 RNF113A RING finger protein 113A 0 0 ; ; 173.19 6.71E-09 13492300 11573.3 9989.2 8842.2 9057.5 10454.2 9389.1 9700.9 9201.2 10584.7 11365.9 FALSE FALSE TRUE 10216.69532 10296.95541 9320.236078 9426.904 9683.014494 9210.018561 10075.06696 10248.62742 10148.39419 11298.29512 0.90426876 0.911372495 0.824924113 0.834365176 0.857033242 0.815168878 0.891733386 0.907095036 0.8982235 1 13.46381747 -8.275562767 0.56486909 0.998302077 0.855301611 0.320350245 0.042701129 0.303988966 0.213640017 0.019271457 0.009532489 5.30E-09 8.275562767 -0.143000466 DSQSPDS(ph)AWR ddPTM_HeLa_CUDC101_4h_R1 1 DSQSPDSAWR 10 0 O94875-12;O94875-11;O94875-9;O94875-8;C9J4Z9;C9IZT7;C9JWC3;C9JN77;C9JI79;C9J372;C9JZ60;C9JDX2;C9JBB0;C9JFS9;C9JC90;C9J620;C9JM25 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 DS(0.04)QS(0.321)PDS(0.639)AWR 107.17 0.0094485 35120000 2433.7 2391.3 2209.3 2169 2660.8 2273.4 1908.2 2026 2769.9 2603.3 TRUE FALSE FALSE 2148.425375 2464.973119 2328.741441 2257.461195 2464.518085 2230.038683 1981.799913 2256.631651 2655.72355 2587.815456 0.830208109 0.952530488 0.899886982 0.872342419 0.952354651 0.861745639 0.765819645 0.872021861 1.026241475 1 11.33751902 -9.451980428 1.042492985 1.004229779 0.872992776 0.513317414 0.052768358 0.436774692 0.803489425 0.044485669 0.009689196 3.53E-10 9.451980428 -0.131237003 AMVDSQQKS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 1 AMVDSQQKSPVK 12 1 A0A494C1D7;H0YAT7;Q6P0N6;Q03001-3;F6QMI7;E9PHM6;Q03001-8;Q03001-14;E7ETB9;F8W9J4;Q03001;Q03001-9 A0A494C1D7;F6QMI7;F8W9J4 DST Dystonin 1 0 AMVDS(0.238)QQKS(0.762)PVK 67.095 0.035212 44888000 4721.5 4484.2 4039.6 4153.9 4433.9 4316.2 4567.4 4834 4624.1 5168.7 TRUE FALSE FALSE 4168.052927 4622.352887 4257.992995 4323.313997 4106.820031 4233.875676 4743.566148 5384.28302 4433.492641 5137.956343 0.811227782 0.899648144 0.82873281 0.84144623 0.799310028 0.824038858 0.92323987 1.04794254 0.86289029 1 12.32697892 -9.451886442 1.155258103 1.000874174 0.862650357 0 0.081392917 0.462846845 1.093714001 0.051629876 0.012490329 3.53E-10 9.451886442 -0.138223817 S(ph)SPKSEIEVISEPPEEK ddPTM_HeLa_CUDC101_4h_R1 2 SSPKSEIEVISEPPEEK 17 1 B7ZM87;O75044;A0A075B7E9;A0A075B7E6;Q5VZB4 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 1 0 S(0.486)S(0.486)PKS(0.027)EIEVISEPPEEK;S(0.493)S(0.493)PKS(0.013)EIEVISEPPEEK ; 72.145 0.012786 53137000 5750.7 5021 5205 5254.2 6294.7 5892.9 5104.7 5782.1 5933.5 6678.4 TRUE FALSE FALSE 5076.611663 5175.691059 5486.398044 5468.488987 5830.352522 5780.502751 5301.589989 6440.310892 5688.918619 6638.67658 0.764702362 0.779626933 0.826429482 0.823731797 0.878240181 0.870731189 0.798591395 0.970119694 0.856935648 1 12.69667995 -9.451621534 1.196412305 0.999622143 0.830187415 0.077546133 0.070475317 0.285902924 0.73460718 0.039553081 0.009915105 3.53E-10 9.451621534 -0.169434728 ATIAGGGVIPHIHK ddPTM_HeLa_CUDC101_4h_R1 2 ATIAGGGVIPHIHK 14 0 P0C0S5;Q71UI9-4;Q71UI9;Q71UI9-3 P0C0S5;Q71UI9 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V 0 0 ; ; 60.301 0.035521 5012100 5427.6 4793.5 4890.7 4746.2 5219.6 4567.6 4173.3 4157.3 3618.6 3712.2 FALSE FALSE TRUE 4791.384956 4941.182053 5155.106036 4939.770551 4834.560507 4480.48064 4334.265579 4630.550228 3469.439776 3690.119669 1.298436199 1.339030301 1.3970024 1.338647793 1.310136511 1.214183019 1.174559626 1.254850965 0.94019709 1 11.84945189 -9.084043518 0.838459894 0.998197782 1.291124521 0.78225301 0.066551455 0.271921373 0.344080711 0.049217469 0.014330968 8.24E-10 9.084043518 0.292926739 (ac)ATEIGS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 2 ATEIGSPPR 9 0 Q9C0J8;B9A053;Q9C0J8-3;Q9C0J8-2 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 0 AT(0.001)EIGS(0.999)PPR;ATEIGS(1)PPR ; 101.38 0.00067203 46087000 57.616 0 170.65 119.2 52.609 107.85 279.48 61.079 64.014 248.23 TRUE FALSE FALSE 50.86233982 0 179.8758552 124.0614912 48.72813888 105.7929409 290.2596372 68.03198647 61.37531583 246.7535169 0.206126099 0 0.728969773 0.502774967 0.197476978 0.428739344 1.176314084 0.275708275 0.248731271 1 7.946926837 -9.451457756 1.216366892 0.996477316 0.42913612 0 0.385592391 0.458958908 1.226476096 0.213725319 0.054478391 3.54E-10 9.451457756 -0.567341196 ATISDEEIER ddPTM_HeLa_CUDC101_4h_R1 1 ATISDEEIER 10 0 C9J0A7;Q9UQN3-2;Q9UQN3 C9J0A7 CHMP2B Charged multivesicular body protein 2b 0 0 128.27 0.01557 3503800 1178.1 1115.3 1314.9 1225.3 1140.7 1538 1449 1170.5 1579.2 1779.5 FALSE FALSE TRUE 1040.004904 1149.661071 1385.987471 1275.27303 1056.552834 1508.665212 1504.888415 1303.744989 1514.104708 1768.915455 0.587933641 0.649924262 0.783523863 0.720934981 0.597288486 0.852875816 0.850740724 0.737030696 0.855950862 1 10.78864938 -9.485514179 1.235926123 0.99955521 0.711806113 0.387169256 0.097254733 0.283781144 0.777533254 0.068594236 0.016864981 3.27E-10 9.485514179 -0.287749097 SVNEILGLAESS(ph)PNEPK ddPTM_HeLa_CUDC101_4h_R1 4 SVNEILGLAESSPNEPK 17 0 Q9H8G2;Q9H8G2-2 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 0 SVNEILGLAES(0.079)S(0.921)PNEPK;SVNEILGLAES(0.396)S(0.604)PNEPK;SVNEILGLAES(0.036)S(0.964)PNEPK;SVNEILGLAES(0.415)S(0.585)PNEPK ;;; 159.64 4.70E-05 140902600 12977.7 12212.6 11558.7 10700.9 12830.9 11703.2 11375.2 11887.7 13689.7 13234.3 TRUE FALSE FALSE 11456.47368 12588.85573 12183.59829 11137.32896 11884.39007 11479.98096 11813.94527 13240.94772 13125.40477 13155.5818 0.87084508 0.956921247 0.926116266 0.846585816 0.903372443 0.872631947 0.898017698 1.006488951 0.997706143 1 13.68338743 -9.451301507 1.093698346 1.001926901 0.904647783 0.390644083 0.043818241 0.430754426 0.891687545 0.03313699 0.007589112 3.54E-10 9.451301507 -0.097279118 SHS(ph)LSRPGPTEGDAEGEAEGPVGSTLGSYATLTR ddPTM_HeLa_CUDC101_4h_R1 2 SHSLSRPGPTEGDAEGEAEGPVGSTLGSYATLTR 34 1 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 S(0.079)HS(0.667)LS(0.237)RPGPT(0.016)EGDAEGEAEGPVGSTLGSYATLTR;S(0.034)HS(0.571)LS(0.353)RPGPT(0.042)EGDAEGEAEGPVGSTLGSYATLTR ; 60.675 0.00035922 47244000 985.55 884.05 770.58 739.75 1051.76 784.61 727.63 794 1127.9 998.53 TRUE FALSE FALSE 870.025323 911.2865326 812.2398857 769.9202025 974.1737602 769.6448715 755.6949328 884.3857505 1081.407485 992.5906992 0.876519721 0.91808893 0.818302938 0.775667355 0.981445586 0.775389969 0.7613359 0.890987344 1.089479768 1 9.955055126 -9.451060149 0.248859253 1.101161461 0.81109109 0.544932462 0.070465166 3.969691839 0.318212738 0.3566573 0.057774881 3.54E-10 9.451060149 -0.29007037 GKY(ph)T(ph)LT(ph)PRSPGQK ddPTM_HeLa_CUDC101_4h_R1 1 GKYTLTPRSPGQK 13 2 Q96QS1-3 Q96QS1-3 3 0 GKY(0.999)T(0.947)LT(0.947)PRS(0.107)PGQK 48.602 0.0033796 0 320.43 470.62 329.2 429.92 421.32 341.35 314.67 331.1 314.74 607.98 TRUE FALSE FALSE 282.8696811 485.1192444 346.9975478 447.4539959 390.240063 334.8393175 326.8069273 368.7910856 301.766284 604.3637079 0.468045446 0.802694202 0.574153516 0.740372048 0.645703999 0.55403611 0.540745453 0.610213818 0.499312384 1 9.239273219 -9.450301488 1.099546996 1.007292886 0.607519492 0 0.178714271 0.233555188 0.490019634 0.073951337 0.017055583 3.55E-10 9.450301488 -0.399773395 ATLPSPDK(ac)LPGFK ddPTM_HeLa_CUDC101_4h_R1 2 ATLPSPDKLPGFK 13 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 1 ; ATLPSPDK(1)LPGFK;ATLPSPDK(1)LPGFK 144.7 0.00084906 954030 1115.009 337.96 414.35 444.65 1180.37 918.205 1045.2 917.59 849.96 648.26 FALSE TRUE FALSE 984.3093353 348.372147 436.7510143 462.7847489 1093.296457 900.6917695 1085.513714 1022.044737 814.924289 644.4041207 1.527472131 0.540611296 0.6777595 0.718159202 1.69660066 1.397712616 1.684523235 1.586030728 1.264616819 1 9.331821909 -5.737011699 24.99708487 1.115051168 1.584059966 0.464737404 0.306906202 246.851766 252604.4668 0.054708488 0.109376032 1.83E-06 5.737011699 0.469008798 AIDS(ph)PGGAVR ddPTM_HeLa_CUDC101_4h_R1 1 AIDSPGGAVR 10 0 O60346 O60346 PHLPP1 PH domain leucine-rich repeat-containing protein phosphatase 1 1 0 AIDS(1)PGGAVR 102.05 0.014032 9970900 1598.1 1066.4 1483 1288.9 1434.4 1276.7 1282.1 1310.8 1691.8 1154.3 TRUE FALSE FALSE 1410.773141 1099.25452 1563.175466 1341.466913 1328.58717 1252.349075 1331.551026 1460.016174 1622.063288 1147.434172 1.229502463 0.958010966 1.362322566 1.169101414 1.157876593 1.091434354 1.160459623 1.272418243 1.413643874 1 10.16419567 -9.449620784 0.961969611 0.990315989 1.175872134 0 0.163811438 0.621889872 0.937783097 0.086374573 0.017390617 3.55E-10 9.449620784 0.185556146 IQFVEGPVEPGKPT(ph)SPEHVVYEGETVTR ddPTM_HeLa_CUDC101_4h_R1 2 IQFVEGPVEPGKPTSPEHVVYEGETVTR 28 1 Q9H7C4-2;Q9H7C4;C9JTN4;C9JSS1 Q9H7C4-2 SYNC Syncoilin 1 0 IQFVEGPVEPGKPT(0.902)S(0.097)PEHVVYEGETVTR;IQFVEGPVEPGKPT(0.499)S(0.499)PEHVVY(0.002)EGETVTR ; 72.028 4.62E-05 35947000 3279.6 2495.8 2107.57 2404.51 2399.2 2503.1 2564 2406.7 2589.3 1616.81 TRUE FALSE FALSE 2895.17026 2572.69264 2221.511609 2502.576311 2222.215796 2455.357538 2662.894339 2680.669 2482.567958 1607.193142 1.80138291 1.600736447 1.382230642 1.557109874 1.382668789 1.527730223 1.656860192 1.667919635 1.544660622 1 10.6503276 -9.449612703 1.155880422 0.996666075 1.584051064 0.051275471 0.203375742 0.212878406 0.504151676 0.100815162 0.024487616 3.55E-10 9.449612703 0.587384989 SSFSSTS(ph)ESPTR ddPTM_HeLa_CUDC101_4h_R1 1 SSFSSTSESPTR 12 0 Q6ZMT1-2;Q6ZMT1 Q6ZMT1-2 STAC2 SH3 and cysteine-rich domain-containing protein 2 1 0 SSFS(0.001)S(0.035)T(0.021)S(0.884)ES(0.057)PT(0.002)R 154.67 0.00027622 5686300 2654.6 2532.4 2514.3 2118 2407.4 2199 2523.8 2878.9 2761.7 2845.2 TRUE FALSE FALSE 2343.431812 2610.420242 2650.230663 2204.381195 2229.810898 2157.057739 2621.143811 3206.622339 2647.861557 2828.276624 0.828572351 0.922972039 0.937047897 0.779407918 0.788399154 0.762675659 0.926763595 1.133772528 0.936210247 1 11.46570752 -9.449471046 1.110236964 1.001997931 0.873787883 0.072320055 0.105293141 0.777267393 1.670219399 0.079184949 0.018467549 3.55E-10 9.449471046 -0.128210047 ATSACAPIS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 ATSACAPISSPK 12 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3;H7C211 A0A087X1U1 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" 1 0 ATSACAPIS(0.579)S(0.421)PK 86.911 0.025532 7265500 4228.4 3116.9 3422.1 3372 3736.4 3517 2968.2 2160.6 3671.9 2385.1 TRUE FALSE FALSE 3732.753362 3212.927995 3607.109077 3509.524735 3460.773216 3449.919085 3082.684468 2406.553971 3520.542728 2370.913319 1.574394699 1.355143593 1.521400655 1.480241689 1.459679351 1.455101313 1.300209689 1.015032457 1.48488884 1 11.2112272 -9.449048085 1.160933154 0.998141576 1.418243482 0 0.209544606 0.324435224 0.776604954 0.110023737 0.026865269 3.56E-10 9.449048085 0.420101906 KAPAGQEEPGT(ph)PPSS(ph)PLSAEQLDR ddPTM_HeLa_CUDC101_4h_R1 2 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 2 0 KAPAGQEEPGT(1)PPS(0.31)S(0.675)PLS(0.016)AEQLDR;KAPAGQEEPGT(1)PPS(0.297)S(0.698)PLS(0.005)AEQLDR ; 110.07 8.74E-07 101363000 6427.2 6278.5 5911.5 5169.3 6132.4 5200.7 4877.3 6819.1 7780.8 7878.4 TRUE FALSE FALSE 5673.813359 6471.933143 6231.093571 5380.126398 5680.025069 5101.505312 5065.419095 7595.35878 7460.072131 7831.538926 0.724482559 0.826393536 0.795641014 0.686982016 0.725275725 0.651405217 0.64679741 0.969842435 0.952567841 1 12.93508011 -9.448918326 0.561607474 1.062242251 0.738294306 0.479086278 0.091978459 0.914153846 0.363086328 0.161969351 0.020759928 3.56E-10 9.448918326 -0.323947946 ATMKDDLADYGGYDGGYVQDYEDFM ddPTM_HeLa_CUDC101_4h_R1 1 ATMKDDLADYGGYDGGYVQDYEDFM 25 1 O75822-2;O75822;O75822-3;H0YLP3 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 0 0 85.737 4.17E-05 3977600 1215.3 1212.9 1134.4 1283.4 1665.3 1246.9 1190.9 984.28 1041.1 1327.5 FALSE FALSE TRUE 1072.844376 1250.268011 1195.729095 1335.742599 1542.454137 1223.11746 1236.833412 1096.326457 998.1854173 1319.603971 0.81300481 0.947456994 0.906127233 1.012229903 1.16887655 0.926882221 0.937276213 0.830799604 0.756428019 1 10.36588931 -6.27560446 23.17601333 0.91232491 0.981179358 0.133840567 0.103349906 596.997991 976769.1103 0.016399764 0.025140962 5.30E-07 6.27560446 0.068854448 IPCKSS(ph)PELEDTATSSK ddPTM_HeLa_CUDC101_4h_R1 1 IPCKSSPELEDTATSSK 17 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IPCKS(0.255)S(0.74)PELEDT(0.004)AT(0.001)SSK 54.857 0.037004 11749000 1250.7 1247.5 1465 1071.8 1060.3 1409.1 1309.3 870.3 1359 1551.4 TRUE FALSE FALSE 1104.094842 1285.933996 1544.202331 1115.512637 982.0837814 1382.223765 1359.80014 969.3714341 1302.981445 1542.172204 0.715934861 0.833845918 1.001316408 0.72333857 0.636818495 0.896283672 0.881743385 0.628575351 0.844900097 1 10.59074815 -9.448887691 1.093630288 1.00413763 0.789854338 0.112721217 0.121344815 0.508767622 1.054160293 0.086113822 0.019794947 3.56E-10 9.448887691 -0.214283291 STAPSAAASASASAAAS(ph)SPAGGGAEALELLEHCGVCR ddPTM_HeLa_CUDC101_4h_R1 1 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 37 0 Q13263-2;Q13263 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 1 0 STAPSAAASASASAAAS(0.5)S(0.5)PAGGGAEALELLEHCGVCR 119.74 2.74E-19 15874000 786.06 586.4 408.44 525.4 575.55 480.31 439.73 489.15 723.23 148.97 TRUE FALSE FALSE 693.9192384 604.4662889 430.5215019 546.828083 533.0928232 471.148887 456.6905334 544.8328588 693.4181533 148.0839198 4.685986428 4.08191713 2.907280564 3.692690494 3.599937278 3.181634357 3.083998141 3.679216889 4.682602636 1 7.210271179 -9.448185878 1.169374306 0.993358874 3.681202497 0 1.225631246 0.190955693 0.465248705 0.415171283 0.102250853 3.56E-10 9.448185878 2.687843623 DHS(ph)PPSQGSPGNSAAR ddPTM_HeLa_CUDC101_4h_R1 2 DHSPPSQGSPGNSAAR 16 0 A0A1W2PRA3;A0A2R8Y701;Q18PE1-2;Q18PE1;Q18PE1-3 A0A1W2PRA3 DOK7 Protein Dok-7 1 0 DHS(0.905)PPS(0.056)QGS(0.033)PGNS(0.006)AAR;DHS(0.997)PPS(0.003)QGSPGNSAAR ; 91.592 0.0078578 5031800 1025.6 884.1 1463.36 1209.14 1505.9 1287.78 1375.37 1490.7 1263.734 2204.25 TRUE FALSE FALSE 905.3807227 911.3380731 1542.473668 1258.453956 1394.812757 1263.217742 1428.418482 1660.395262 1211.64235 2191.139023 0.413200949 0.415919786 0.703959745 0.574337795 0.636569721 0.576511909 0.651906824 0.757777231 0.552973744 1 11.09746531 -9.447954906 1.188651133 0.999337237 0.574770583 0 0.171262315 0.236162096 0.598319267 0.081539602 0.020420708 3.56E-10 9.447954906 -0.424566654 QAREES(ph)EESEAEPVQR ddPTM_HeLa_CUDC101_4h_R1 2 QAREESEESEAEPVQR 16 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 QAREES(0.992)EES(0.008)EAEPVQR;QAREES(0.998)EES(0.002)EAEPVQR ; 94.45 0.0035693 10422300 2297.32 2946.32 3055.7 2172.77 3136.6 2321.95 2349.46 2214.7 3047.11 4049.9 TRUE FALSE FALSE 2028.031632 3037.092627 3220.900385 2261.384952 2905.219267 2277.662672 2440.079459 2466.812496 2921.506836 4025.811015 0.503757286 0.754405166 0.80006249 0.561721587 0.721648199 0.565764926 0.606108794 0.612749204 0.725693984 1 11.97506373 -9.447324938 1.096719383 1.006789576 0.63285767 0.251303736 0.120514665 0.243813578 0.509017018 0.072038431 0.01664753 3.57E-10 9.447324938 -0.373931906 GVDLLLEGVQGES(ph)SPTRR ddPTM_HeLa_CUDC101_4h_R1 2 GVDLLLEGVQGESSPTRR 18 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 GVDLLLEGVQGES(0.844)S(0.154)PT(0.002)RR;GVDLLLEGVQGES(0.752)S(0.242)PT(0.006)RR ; 92.913 0.0022126 12287400 1476.39 1664.11 1237.35 1192.58 1581.97 1622.26 1119.01 1525.98 1602.4 1773.73 TRUE FALSE FALSE 1303.329802 1715.379257 1304.244884 1241.218567 1465.271225 1591.318093 1162.170591 1699.691395 1536.348394 1763.179775 0.739192804 0.972889595 0.739711799 0.703965974 0.831039038 0.90252742 0.659133349 0.963992112 0.871350962 1 10.78396387 -9.44719351 1.047219289 1.005977633 0.804690059 0.122360766 0.108856423 0.491697708 0.916779124 0.076791841 0.016930312 3.57E-10 9.44719351 -0.201287574 QASS(ph)DSDSILSLK ddPTM_HeLa_CUDC101_4h_R1 2 QASSDSDSILSLK 13 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 QAS(0.053)S(0.744)DS(0.181)DS(0.022)ILSLK;QAS(0.247)S(0.458)DS(0.285)DS(0.01)ILSLK ; 115.1 0.0022378 5553500 3457.8 3313.2 2763.6 2906.1 3218.3 2860.1 2812.8 3093.4 3497.2 3859.7 TRUE FALSE FALSE 3052.481926 3415.275765 2913.008575 3024.623319 2980.892421 2805.548358 2921.290638 3445.540152 3353.043936 3836.742333 0.795592109 0.89014989 0.759240085 0.788331104 0.77693318 0.731231893 0.761398704 0.898037933 0.873929924 1 11.90566616 -9.447136018 0.455371439 1.0675478 0.785258141 0.357371592 0.064240546 0.894666815 0.221517708 0.119694222 0.014337117 3.57E-10 9.447136018 -0.28228966 ATQSDMEKEQK ddPTM_HeLa_CUDC101_4h_R1 1 ATQSDMEKEQK 11 1 Q86X51 Q86X51 CXorf67 Uncharacterized protein CXorf67 0 0 73.248 0.040658 0 123.71 328.7 350.42 928.49 811.9 786.46 840.76 622.29 0 0 FALSE FALSE TRUE 109.2089013 338.8268574 369.3647652 966.3578355 752.0077545 771.4595858 873.1883948 693.1289782 0 0 0 SESLS(ph)NCSIGK ddPTM_HeLa_CUDC101_4h_R1 1 SESLSNCSIGK 11 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.001)ES(0.287)LS(0.685)NCS(0.028)IGK 152.4 0.00047547 74333000 2597 1913.5 1640.2 1811.4 1798.7 2012.4 1757.2 2049.2 1888.2 1082.7 TRUE FALSE FALSE 2292.583597 1972.452667 1728.874173 1885.276722 1666.013485 1974.016823 1824.975793 2282.472645 1810.367597 1076.260052 2.130139079 1.832691516 1.606372149 1.751692556 1.547965551 1.834144841 1.695664341 2.120744554 1.682091232 1 10.071811 -9.447002589 1.151563232 0.995059007 1.825864166 0.190112652 0.272738845 0.215321501 0.505911714 0.143856874 0.034949704 3.57E-10 9.447002589 0.830805159 DVES(ph)PSWR ddPTM_HeLa_CUDC101_4h_R1 2 DVESPSWR 8 0 F5H6E2;O00159-2;O00159-3;O00159 F5H6E2 MYO1C Unconventional myosin-Ic 1 0 DVES(0.993)PS(0.007)WR;DVES(0.839)PS(0.161)WR ; 139.38 0.0046192 132568000 5544.9 4367.5 4523 4480.6 5255 4406.9 4666.2 4496 5583 4307.3 TRUE FALSE FALSE 4894.935228 4502.057498 4767.527061 4663.338235 4867.349119 4322.845725 4846.176897 5007.806467 5352.866377 4281.679988 1.143227715 1.051469869 1.113471132 1.089137499 1.136784891 1.009614389 1.131840051 1.169589152 1.250178993 1 12.06396126 -9.446992989 1.090942784 0.997904894 1.106119083 0 0.089425763 0.389208711 0.80229149 0.033207894 0.007636763 3.57E-10 9.446992989 0.10821419 NQFLENEDTKFS(ph)LSDDQR ddPTM_HeLa_CUDC101_4h_R1 1 NQFLENEDTKFSLSDDQR 18 1 Q6UB99;A0A2R8Y438 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 1 0 NQFLENEDT(0.041)KFS(0.572)LS(0.388)DDQR 66.448 0.014324 10665000 1851.6 1901.1 1422.5 1562.9 2345.8 1620.5 1677.3 1770.3 2259.3 2118.6 TRUE FALSE FALSE 1634.558255 1959.670638 1499.404653 1626.641817 2172.755007 1589.591662 1741.994023 1971.823796 2166.170698 2105.998473 0.776144084 0.930518546 0.711968538 0.772385089 1.031698282 0.75479241 0.827158255 0.936289281 1.028571827 1 11.04028867 -9.446648205 1.126104269 1.001877847 0.835520397 0.340398475 0.094078844 0.49551987 1.103372958 0.065754834 0.015626187 3.58E-10 9.446648205 -0.16635745 S(ph)PENSTLEEILGQYQR ddPTM_HeLa_CUDC101_4h_R1 1 SPENSTLEEILGQYQR 16 0 Q86SQ7-2;Q86SQ7-3;Q86SQ7-4;Q86SQ7 Q86SQ7-2 SDCCAG8 Serologically defined colon cancer antigen 8 1 0 S(0.997)PENS(0.002)T(0.002)LEEILGQYQR 139.46 0.00034249 3243700 334.22 234.49 177.21 229.68 333.97 344.8 133.03 314.78 379.53 167.23 TRUE FALSE FALSE 295.0432382 241.714359 186.7905086 239.0473432 309.3336985 338.2235145 138.1610117 350.6132828 363.8856128 166.2353085 1.774853013 1.45404945 1.123651228 1.438005832 1.860818265 2.034606953 0.831117125 2.109138461 2.18897908 1 7.377083034 -9.446337102 1.089937499 0.988557492 1.574716884 0 0.525779419 0.593816484 1.22166706 0.274256746 0.063075187 3.58E-10 9.446337102 0.586159393 ECINAAPDSPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ECINAAPDSPSK 12 0 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 0 ECINAAPDS(0.407)PS(0.593)K 118.52 0.0036314 79768000 6630.8 5905.6 5603.3 5308.1 5253.2 5487.5 5489.4 5523.9 5907.7 5270.5 TRUE FALSE FALSE 5853.547676 6087.544536 5906.231347 5524.587262 4865.681902 5382.83508 5701.127997 6152.718448 5664.182106 5239.150832 1.11727031 1.161933438 1.127326076 1.05448143 0.928715752 1.027425103 1.088177871 1.174373223 1.081125985 1 12.35511728 -9.446140032 1.235364986 1.000936379 1.08433332 0.010346614 0.071643945 0.702656071 1.951185096 0.048195563 0.012573426 3.58E-10 9.446140032 0.083396941 VVNGGVPWPSPCPS(ph)PSSRPPSR ddPTM_HeLa_CUDC101_4h_R1 2 VVNGGVPWPSPCPSPSSRPPSR 22 1 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 VVNGGVPWPS(0.002)PCPS(0.737)PS(0.097)S(0.097)RPPS(0.066)R;VVNGGVPWPS(0.001)PCPS(0.292)PS(0.292)S(0.231)RPPS(0.184)R ; 75.319 0.0012325 29668000 2846.3 2295.4 2064.6 2497.3 3195.5 2613.4 2069 1849.11 2598.6 2238.7 TRUE FALSE FALSE 2512.661029 2366.118553 2176.218521 2599.150688 2959.774331 2563.553749 2148.802023 2059.605208 2491.484608 2225.384113 1.129090935 1.063240516 0.977906919 1.167955983 1.330006049 1.15196012 0.965587024 0.925505487 1.119575085 1 11.11983866 -9.445732131 1.062966819 0.997467094 1.096402339 0 0.117767247 1.224337458 2.369750342 0.094488704 0.021201324 3.58E-10 9.445732131 0.098935245 QPSVETLDS(ph)PTGSHVEWCK ddPTM_HeLa_CUDC101_4h_R1 1 QPSVETLDSPTGSHVEWCK 19 0 E9PPP8;Q8NEC6;F8WA39;Q13613-2;Q13613 E9PPP8 MTMR1 Myotubularin-related protein 1 1 0 QPSVET(0.019)LDS(0.977)PT(0.003)GSHVEWCK 104.81 0.00040099 12041000 1877.1 1337.5 1294 1317.2 1666.8 1553.4 1466.5 1439.6 1361.7 1070.2 TRUE FALSE FALSE 1657.069183 1378.70679 1363.957554 1370.921109 1543.843485 1523.771483 1523.063396 1603.478245 1305.57015 1063.834403 1.557638274 1.29597876 1.282114538 1.288660252 1.451206579 1.43233898 1.431673381 1.507263011 1.227230616 1 10.05505788 -9.445689839 1.102647476 0.993125927 1.412427735 0.489440005 0.110771999 0.22997664 0.486818129 0.076290858 0.017772321 3.58E-10 9.445689839 0.419301808 GGAGAWLGGPAASLS(ph)PPKGSSASQGGSK ddPTM_HeLa_CUDC101_4h_R1 2 GGAGAWLGGPAASLSPPKGSSASQGGSK 28 1 Q5SXM2 Q5SXM2 SNAPC4 snRNA-activating protein complex subunit 4 1 0 GGAGAWLGGPAAS(0.13)LS(0.863)PPKGS(0.003)S(0.002)AS(0.001)QGGSK;GGAGAWLGGPAAS(0.219)LS(0.767)PPKGS(0.007)S(0.007)ASQGGSK ; 86.324 5.58E-07 61582000 2714.2 2457.12 2393.8 2293.2 2905.6 2570.1 2329.7 2368.23 2782.3 2809.1 TRUE FALSE FALSE 2396.04559 2532.820955 2523.216069 2386.726608 2691.259677 2521.079625 2419.557309 2637.81973 2667.612416 2792.391348 0.858062245 0.907043691 0.903604028 0.854724969 0.963783131 0.902838933 0.866482168 0.944645432 0.955314669 1 11.44728543 -9.445581726 1.148594331 1.000647641 0.896124605 0.407875804 0.035824752 0.282795248 0.660719837 0.023731893 0.005763098 3.58E-10 9.445581726 -0.104523036 SMSQVDVDS(ph)GIENMEVDENDRR ddPTM_HeLa_CUDC101_4h_R1 2 SMSQVDVDSGIENMEVDENDRR 22 1 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 SMSQVDVDS(1)GIENMEVDENDRR;SMSQVDVDS(1)GIENMEVDENDRR ; 101.71 6.30E-05 14117400 3657.6 2718.6 3035.4 2677.69 3111.5 3372.5 3137.4 2270.51 3048.4 2479.5 TRUE FALSE FALSE 3228.861673 2802.356844 3199.502906 2786.897772 2881.970844 3308.175181 3258.410569 2528.975681 2922.743662 2464.751824 1.310014924 1.136973231 1.298103474 1.130701171 1.169274252 1.342194029 1.322003513 1.026056926 1.185816614 1 11.26722667 -9.445185386 1.115853214 0.996933205 1.228597194 0.071583448 0.112526808 0.38032012 0.828842382 0.069997282 0.016517761 3.59E-10 9.445185386 0.231663989 LIRPEYAWIVQPVSGAVYDRPGAS(ph)PKR ddPTM_HeLa_CUDC101_4h_R1 1 LIRPEYAWIVQPVSGAVYDRPGASPKR 27 3 G3V198;Q12769 G3V198 NUP160 Nuclear pore complex protein Nup160 1 0 LIRPEYAWIVQPVS(0.01)GAVY(0.023)DRPGAS(0.967)PKR 64.962 0.0010084 258460000 2510.9 1930.2 2013.8 1869 2485 2360.8 2087.6 1952.4 2251.6 1256.5 TRUE FALSE FALSE 2216.576108 1989.667174 2122.672119 1945.225899 2301.686501 2315.771673 2168.119431 2174.653324 2158.788095 1249.026282 1.774643288 1.592974626 1.699461532 1.557393889 1.842784683 1.854061605 1.735847726 1.741078915 1.728376837 1 10.28658812 -9.445161599 0.553030602 0.818010289 1.746668218 0 0.24507848 0.3478892 0.133595668 0.17479223 0.022342371 3.59E-10 9.445161599 0.928657929 LVESANEK(ac)AER ddPTM_HeLa_CUDC101_4h_R1 1 LVESANEKAER 11 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 0 1 LVESANEK(1)AER 89.561 0.024286 18749000 1135.1 2397.2 3288 4823.1 7032 5650.6 5714.2 6399 774.28 733.77 FALSE TRUE FALSE 1002.045299 2471.054891 3465.759226 5019.806865 6513.26337 5542.82422 5934.598608 7127.436294 742.3638507 729.4055034 1.373783573 3.387765624 4.751484887 6.882052359 8.929550626 7.599098435 8.136213095 9.771569122 1.017765629 1 9.510577275 -6.539243694 1.011826607 1.081670798 8.70305459 0.967799758 0.582017597 0.053217877 0.108815356 0.10501625 0.18632214 2.89E-07 6.539243694 7.621383793 up SKLNTITPVVGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 SKLNTITPVVGKK 13 2 Q9HCK8-2;Q9HCK8;A0A2R8Y840;A0A2R8Y4P3;A0A2R8YFT4;A0A2R8Y808 Q9HCK8-2;A0A2R8Y808 CHD8 Chromodomain-helicase-DNA-binding protein 8 0 1 ; SKLNTITPVVGK(1)K;SKLNTITPVVGK(1)K 134.21 0.0017286 4129600 1795.68 3393.1 4874.4 7059.6 8494 7197.3 7481.5 10067.9 1447.12 1296.89 FALSE TRUE FALSE 1585.193112 3497.637389 5137.924808 7347.521002 7867.414542 7060.023494 7770.063961 11213.98904 1387.469101 1289.176041 1.229617261 2.713079734 3.985433057 5.699393078 6.10266891 5.476384351 6.02715511 8.698570782 1.076244871 1 10.33223357 -6.53527358 0.877286041 0.993148137 6.78243188 0.907833788 0.75685083 0.105720836 0.162566707 0.14671412 0.27249968 2.92E-07 6.53527358 5.789283743 up HLLQPPPRPAQPTSGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 HLLQPPPRPAQPTSGKK 17 2 H0YBK3;Q9NV88-3;Q9NV88-2;Q9NV88 H0YBK3 INTS9 Integrator complex subunit 9 0 1 ; HLLQPPPRPAQPTSGK(1)K;HLLQPPPRPAQPTSGK(1)K 49.482 0.030949 10190300 3491.7 4207 6694.4 8992.5 10750.1 10121.6 10200.8 11262.5 1766.33 1944.02 FALSE TRUE FALSE 3082.408219 4336.612683 7056.319513 9359.253019 9957.08654 9928.547344 10594.24827 12544.57748 1693.52113 1932.456883 1.595072183 2.244092855 3.651475786 4.843188535 5.152553017 5.137784668 5.482268903 6.491517399 0.87635649 1 10.91622051 -6.535183538 0.842993944 1.158054277 5.792293222 0.972288083 0.325535741 0.060721876 0.08625291 0.066032138 0.124292425 2.92E-07 6.535183538 4.634238945 up RLRT(ph)AFY(ph)T(ph)DLEEALMR ddPTM_HeLa_CUDC101_4h_R1 1 RLRTAFYTDLEEALMR 16 2 Q8IY51 Q8IY51 TIGD4 Tigger transposable element-derived protein 4 3 0 RLRT(1)AFY(1)T(1)DLEEALMR 42.395 0.0033546 0 895.42 806.3 864.18 1014.1 857.88 926.51 905.07 787.14 1036.6 1137.2 TRUE FALSE FALSE 790.460225 831.1411473 910.9001848 1055.459381 794.5959015 908.8383654 939.9788531 876.7448359 993.8709092 1130.435884 0.699252595 0.735239529 0.805795532 0.933674697 0.702911074 0.803971617 0.831518945 0.775581215 0.87919264 1 10.14266345 -9.445113728 1.170054341 1.000344907 0.780803818 0.373992701 0.073695326 0.272008953 0.664450283 0.04823948 0.011943174 3.59E-10 9.445113728 -0.219541089 GSASYS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 GSASYSPPR 9 0 A0A087WTY1;P0DPB5 A0A087WTY1 POLR1D 1 0 GSAS(0.019)YS(0.981)PPR 96.665 0.020869 134920000 1936.7 1706 1843.1 1971.1 1969.8 1844.6 1656.7 1486.9 1891.7 2087.7 TRUE FALSE FALSE 1709.682962 1758.559838 1942.743561 2051.489978 1824.491778 1809.417328 1720.599474 1656.162686 1813.723325 2075.282268 0.823831528 0.847383445 0.936134612 0.988535396 0.879153553 0.871889746 0.829091782 0.798042132 0.873964643 1 11.01909186 -9.44479913 1.148354845 1.000792956 0.870960845 0.006870052 0.065143841 0.403498874 0.94255764 0.042041022 0.010219361 3.59E-10 9.44479913 -0.12983211 ATSLGRPEEEEDELAHR ddPTM_HeLa_CUDC101_4h_R1 2 ATSLGRPEEEEDELAHR 17 1 D6RER6;P36551-2;P36551 D6RER6 CPOX "Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial" 0 0 ; ; 98.421 0.002126 17295400 6707.8 6249.9 5488.4 6082 6869.1 6378.6 5611.1 6080.3 5611.3 6001.2 FALSE FALSE TRUE 5921.521852 6442.452011 5785.119506 6330.050249 6362.380178 6256.938832 5827.522007 6772.456775 5379.999839 5965.504596 0.992627155 1.079950892 0.969761973 1.061108938 1.066528418 1.048853242 0.976869922 1.135269727 0.901851596 1 12.54242846 -6.720694431 0.678592221 0.995523909 1.054834141 0.276396969 0.054437005 0.749701753 0.704878357 0.010174468 0.01790258 1.90E-07 6.720694431 0.059310232 K(ac)APSKRPPISDSEELSAK ddPTM_HeLa_CUDC101_4h_R1 2 KAPSKRPPISDSEELSAK 18 3 P42568-2;P42568 P42568-2 MLLT3 Protein AF-9 0 1 ; K(0.5)APSK(0.5)RPPISDSEELSAK;K(0.539)APSK(0.461)RPPISDSEELSAK 60.307 0.016059 18336200 9373.2 10428.4 12954.9 14988 17185 16623.1 17189.8 17590.9 6415.9 7902.9 FALSE TRUE FALSE 8274.487705 10749.68664 13655.28108 15599.27542 15917.29679 16306.04206 17852.81634 19593.37695 6151.433886 7855.893199 1.053284139 1.36835957 1.738221324 1.985678144 2.026160028 2.07564457 2.272538067 2.494099201 0.783034307 1 12.9395596 -6.512428632 0.799039318 0.993707221 2.298574501 0.954210594 0.119981987 0.074441331 0.094995896 0.021947316 0.042786401 3.07E-07 6.512428632 1.30486728 up TADGRVS(ph)PAGDDKPK ddPTM_HeLa_CUDC101_4h_R1 1 TADGRVSPAGDDKPK 15 2 H7C1Q0 H7C1Q0 BBX 1 0 TADGRVS(1)PAGDDKPK 106.67 0.0026574 9068400 2162.5 1875.7 2111.7 2543.3 2227.7 2254.9 2219.9 1727.2 2404.6 2788.4 TRUE FALSE FALSE 1909.015028 1933.488094 2225.86489 2647.026767 2063.367009 2211.891539 2305.522287 1923.817466 2305.48137 2771.814473 0.688723956 0.697553214 0.803035308 0.954979777 0.744410216 0.79799408 0.831773666 0.694064298 0.831758905 1 11.43661498 -9.444744035 1.179283872 0.999903836 0.773495947 0.196198733 0.091009403 0.307401789 0.765217724 0.056358862 0.014071404 3.59E-10 9.444744035 -0.226407888 RPGHDDGQRPS(ph)GGAAAAPR ddPTM_HeLa_CUDC101_4h_R1 1 RPGHDDGQRPSGGAAAAPR 19 2 Q8N726-2;Q8N726 Q8N726-2 CDKN2A Tumor suppressor ARF 1 0 RPGHDDGQRPS(1)GGAAAAPR 57.788 0.015905 1229900 159.81 168.6 196.37 167.63 285.11 247.84 261.14 127.35 194.21 360.39 TRUE FALSE FALSE 141.0773141 173.7943662 206.9863562 174.466676 264.0780033 243.1128649 271.2122573 141.8470092 186.2045816 358.2463843 0.393799687 0.485125248 0.57777654 0.487001917 0.737140736 0.678619173 0.757055114 0.395948195 0.519766814 1 8.484808333 -9.444552458 1.173457666 1.000315738 0.558350413 0 0.190044025 0.261443451 0.643223843 0.093405063 0.023212394 3.59E-10 9.444552458 -0.441965325 LLS(ph)QESR ddPTM_HeLa_CUDC101_4h_R1 1 LLSQESR 7 0 D6RBD3;Q3KP44-2;Q3KP44 D6RBD3 ANKRD55 Ankyrin repeat domain-containing protein 55 1 0 LLS(1)QESR 71.715 0.038073 2061600 1164.8 1091.2 1260.4 1359.8 1252.4 1234.4 1075.6 778.29 1139.9 1522.1 TRUE FALSE FALSE 1028.26391 1124.818579 1328.541037 1415.258522 1160.012947 1210.855877 1117.086252 866.8873876 1092.91284 1513.046482 0.679598362 0.743413102 0.878056988 0.935370155 0.766673702 0.800276721 0.738302667 0.572941676 0.722326018 1 10.56324059 -9.444189381 1.139915363 1.001844453 0.764784178 0 0.12637744 0.382986035 0.879135559 0.072650292 0.017545214 3.60E-10 9.444189381 -0.237060276 EIS(ph)SPARPCSFEEAMK ddPTM_HeLa_CUDC101_4h_R1 1 EISSPARPCSFEEAMK 16 1 O94916-2;O94916;O94916-4;O94916-5 O94916-2 NFAT5 Nuclear factor of activated T-cells 5 1 0 EIS(0.566)S(0.432)PARPCS(0.002)FEEAMK 131.24 0.0023501 22798000 1514.7 1210.9 1258.1 1084 1405.6 1041.3 1051.9 1073.4 1580.4 893.04 TRUE FALSE FALSE 1337.149162 1248.206394 1326.116692 1128.210205 1301.911688 1021.438937 1092.472135 1195.591517 1515.255243 887.7281584 1.506259714 1.406068268 1.493831956 1.270896045 1.466565723 1.150621311 1.230638146 1.346799137 1.706891044 1 9.793974149 -9.444167962 1.176601063 1.000020917 1.368658182 0 0.244254581 0.279905984 0.693155599 0.083467906 0.020810552 3.60E-10 9.444167962 0.368637265 FS(ph)CLS(ph)LPTEPS(ph)PS(ph)PRIT(ph)RK ddPTM_HeLa_CUDC101_4h_R1 1 FSCLSLPTEPSPSPRITRK 19 2 K7ER10 K7ER10 DNMT1 5 0 FS(0.988)CLS(0.971)LPT(0.045)EPS(0.998)PS(0.998)PRIT(1)RK 52.927 0.015879 21604000 2011.6 1647.6 1776.2 2056.4 2364.4 1954.8 1880.6 1541.2 2049.2 2259.5 TRUE FALSE FALSE 1775.803297 1698.360603 1872.226745 2140.268881 2189.982923 1917.515447 1953.135372 1716.643978 1964.731109 2246.060394 0.790630253 0.756150907 0.833560286 0.952899079 0.975032964 0.853723904 0.869582749 0.764291104 0.87474545 1 11.13318101 -9.444049188 1.204615557 0.99913732 0.848338606 0.094060894 0.077774357 0.41398421 1.084123635 0.050885798 0.012989979 3.60E-10 9.444049188 -0.150798715 GGNVFAALIQDQS(ph)EEEEEEEKHPPKPAKPEK ddPTM_HeLa_CUDC101_4h_R1 1 GGNVFAALIQDQSEEEEEEEKHPPKPAKPEK 31 3 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 GGNVFAALIQDQS(1)EEEEEEEKHPPKPAKPEK 51.296 0.0061911 362680000 8514.7 8011.6 8188.6 8102.6 7604.9 8397.8 7919.9 7143.5 7556.7 9452.5 TRUE FALSE FALSE 7516.619773 8258.4279 8631.300485 8433.05905 7043.901678 8237.625957 8225.373196 7956.687165 7245.209628 9396.27611 0.799957311 0.878904345 0.918587362 0.89748949 0.749648222 0.876690495 0.875386494 0.846791545 0.771072449 1 13.19787339 -9.443987536 1.111778874 1.002084042 0.852201508 0 0.0842909 0.306121309 0.661591996 0.036381982 0.008569245 3.60E-10 9.443987536 -0.149882534 IKQHLENDPGS(ph)NEDTDIPK ddPTM_HeLa_CUDC101_4h_R1 1 IKQHLENDPGSNEDTDIPK 19 1 O43396;K7ER96;K7EML9 O43396 TXNL1 Thioredoxin-like protein 1 1 0 IKQHLENDPGS(0.971)NEDT(0.029)DIPK 91.883 0.00061439 0 2327.6 1796.5 1787.2 2091.3 2281.9 1616.1 1877.9 1721.7 1947.3 1663.9 TRUE FALSE FALSE 2054.762256 1851.848036 1883.821438 2176.592253 2113.568783 1585.275585 1950.331232 1917.691369 1867.03147 1654.003049 1.242296535 1.119615854 1.138946775 1.315954197 1.277850597 0.958447801 1.179158184 1.159424325 1.128795664 1 10.69174618 -9.443865767 1.117899679 0.997750146 1.178721347 0.110689915 0.100683666 0.487193212 1.06707468 0.070048821 0.016594347 3.60E-10 9.443865767 0.180971201 PARPS(ph)PSPTGGR ddPTM_HeLa_CUDC101_4h_R1 1 PARPSPSPTGGR 12 1 Q9Y6R9 Q9Y6R9 CCDC61 Coiled-coil domain-containing protein 61 1 0 PARPS(0.748)PS(0.245)PT(0.007)GGR 80.719 0.0028531 0 654.26 605.32 603.98 638.97 709.97 657.48 722.6 584.64 634.63 836.51 TRUE FALSE FALSE 577.5686346 623.9691917 636.6329857 665.0299585 657.5969276 644.9396644 750.4709241 651.1930544 608.4702828 831.5344013 0.694581768 0.750382895 0.765612324 0.799762412 0.790823478 0.775601903 0.902513381 0.783122206 0.731743969 1 9.69963214 -9.443822404 1.169826964 1.00028435 0.777219073 0 0.095134183 0.219943007 0.537287374 0.039603587 0.009822359 3.60E-10 9.443822404 -0.223065277 LCDFGSASHVADNDITPY(ph)LVSR ddPTM_HeLa_CUDC101_4h_R1 4 LCDFGSASHVADNDITPYLVSR 22 0 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 LCDFGSASHVADNDIT(0.002)PY(0.996)LVS(0.002)R;LCDFGSASHVADNDIT(0.016)PY(0.983)LVSR;LCDFGSASHVADNDIT(0.007)PY(0.992)LVS(0.001)R;LCDFGSASHVADNDIT(0.001)PY(0.993)LVS(0.006)R ;;; 231.4 6.18E-45 1033836000 16208.7 9115.3 8140.9 7497.8 17108.5 13740.1 12878.1 11556.6 13587.6 5304.8 TRUE FALSE FALSE 14308.74076 9396.131589 8581.021679 7803.592692 15846.44004 13478.03049 13374.81263 12872.15663 13027.51338 5273.246814 2.713459328 1.781849384 1.627274805 1.479845903 3.005063218 2.555926351 2.536352479 2.441030562 2.470491869 1 12.36447581 -9.443703517 1.037739532 0.958298781 2.290384052 0 0.649498393 0.403566266 0.737008128 0.414919973 0.091125501 3.60E-10 9.443703517 1.332085271 FSGWYDADLS(ph)PAGHEEAK ddPTM_HeLa_CUDC101_4h_R1 4 FSGWYDADLSPAGHEEAK 18 0 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 1 0 FS(0.001)GWYDADLS(0.999)PAGHEEAK;FSGWYDADLS(1)PAGHEEAK;FSGWYDADLS(1)PAGHEEAK;FS(0.001)GWYDADLS(0.999)PAGHEEAK ;;; 96.591 0.0020092 34930700 10398.8 9766.8 9287.53 9840.9 11442.8 10698.1 9944.43 9196.2 11157.5 12511.4 TRUE FALSE FALSE 9179.868428 10067.70353 9789.641965 10242.25444 10598.68744 10494.05157 10327.99 10243.05824 10697.58313 12436.98164 0.738110636 0.809497338 0.787139698 0.823532167 0.852191291 0.843778006 0.830425766 0.823596797 0.860143035 1 13.60234878 -9.443526809 1.158263095 1.000695679 0.80847424 0.344710934 0.051711018 0.177145168 0.422632377 0.027390154 0.006728857 3.60E-10 9.443526809 -0.192221439 DVSGFSDPYCLLGIEQGVGVPGGS(ph)PGSR ddPTM_HeLa_CUDC101_4h_R1 2 DVSGFSDPYCLLGIEQGVGVPGGSPGSR 28 0 K7EQ37;K7EN81;Q70J99-2;Q70J99;Q70J99-3;K7EIH3 K7EQ37 UNC13D Protein unc-13 homolog D 1 0 DVSGFSDPYCLLGIEQGVGVPGGS(0.5)PGS(0.5)R;DVSGFSDPYCLLGIEQGVGVPGGS(0.5)PGS(0.5)R ; 132.82 1.83E-16 66777000 5098.8 4208.9 3035.9 3272.2 4139.6 4225.5 3567.4 3347.5 3982.4 2289.4 TRUE FALSE FALSE 4501.126393 4338.57122 3200.029937 3405.65446 3834.229955 4144.905628 3704.995813 3728.565869 3818.243786 2275.782547 1.977836766 1.906408513 1.406122892 1.496476218 1.684796274 1.821310051 1.628009591 1.638366492 1.677771803 1 11.152147 -9.443165812 1.165256367 0.998493844 1.714380665 0.019680353 0.262669591 0.232737292 0.563395979 0.134271976 0.033204282 3.60E-10 9.443165812 0.715886821 TASDTDSSYCIPT(ph)AGMSPSR ddPTM_HeLa_CUDC101_4h_R1 1 TASDTDSSYCIPTAGMSPSR 20 0 Q13480-2;B7Z3B9;Q13480 Q13480-2 GAB1 GRB2-associated-binding protein 1 1 0 TASDTDSS(0.001)YCIPT(0.859)AGMS(0.138)PS(0.002)R 164.01 1.91E-05 10217000 1076.4 989.28 892.92 925.93 1051.5 1169.4 1061.4 900.55 1070.1 428.95 TRUE FALSE FALSE 950.2260237 1019.758544 941.1939561 963.6934276 973.9329399 1147.095643 1102.338554 1003.064972 1025.990025 426.3985863 2.228492435 2.391561738 2.207310217 2.260076507 2.284090452 2.6901957 2.585230319 2.352411579 2.406175954 1 8.736058845 -9.442482911 0.364264527 0.391440849 2.506862168 0 0.462557901 0.513884072 0.08069593 0.440164361 0.054624872 3.61E-10 9.442482911 2.115421319 SGVSS(ph)DNEDDDDEEDGNYLHPSLFASK ddPTM_HeLa_CUDC101_4h_R1 2 SGVSSDNEDDDDEEDGNYLHPSLFASK 27 0 Q12872;Q12872-2 Q12872 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 S(0.002)GVS(0.228)S(0.771)DNEDDDDEEDGNYLHPSLFASK;S(0.023)GVS(0.439)S(0.538)DNEDDDDEEDGNYLHPSLFASK ; 110.44 3.77E-08 41278000 3612.3 2763.8 2592.7 2247.69 4136 2947.1 3072.6 2526.8 2825.7 2446.7 TRUE FALSE FALSE 3188.87167 2848.949402 2732.869204 2339.360514 3830.89552 2890.888978 3191.111211 2814.440698 2709.22345 2432.14692 1.311134473 1.171372247 1.123644786 0.96185 1.575108596 1.188616097 1.312055282 1.15718367 1.113922612 1 11.24801467 -9.441847045 1.071508716 0.9946012 1.232518866 0.144797977 0.154086593 0.612487877 1.21112878 0.113830347 0.025907182 3.62E-10 9.441847045 0.237917666 SSS(ph)FSELCHR ddPTM_HeLa_CUDC101_4h_R1 1 SSSFSELCHR 10 0 Q5T8I3-2;Q5T8I3 Q5T8I3-2 FAM102B Protein FAM102B 1 0 S(0.076)S(0.076)S(0.848)FSELCHR 141.89 0.00069152 9950200 3356.4 2544 1994 2421.4 2758.9 2535.1 1971.2 1922.4 2655.1 1132.6 TRUE FALSE FALSE 2962.96788 2622.377625 2101.801672 2520.155158 2555.381444 2486.747191 2047.229844 2141.238245 2545.655654 1125.863245 2.631729825 2.329215059 1.866835676 2.238420314 2.269708559 2.208747113 1.818364578 1.90186353 2.261070042 1 10.13681588 -9.441709976 1.15628219 0.995663805 2.195402906 0 0.447871796 0.202336852 0.481107205 0.194974294 0.04794835 3.62E-10 9.441709976 1.199739101 IKS(ph)AT(ph)IHAAS(ph)KVFIT(ph)FEVK ddPTM_HeLa_CUDC101_4h_R1 1 IKSATIHAASKVFITFEVK 19 2 Q5VVH5 Q5VVH5 IRAK1BP1 Interleukin-1 receptor-associated kinase 1-binding protein 1 4 0 IKS(1)AT(1)IHAAS(1)KVFIT(1)FEVK 42.708 0.039257 23077000 172.11 167.84 284.48 195.85 232.05 272.23 290.55 296.29 277.79 460.53 TRUE FALSE FALSE 151.9355267 173.0109515 299.8598493 203.8376095 214.9321338 267.0376663 301.7566108 330.018456 266.3393786 457.7907471 0.331888592 0.377925837 0.655015094 0.445263717 0.469498641 0.583318182 0.659158388 0.720893679 0.581792839 1 8.838544493 -9.441642686 1.172837704 1.000057773 0.512219771 0.108500629 0.174319238 0.241596091 0.594312925 0.095116117 0.023729107 3.62E-10 9.441642686 -0.487838002 VPS(ph)PPDEHQEAENAVSSGNR ddPTM_HeLa_CUDC101_4h_R1 4 VPSPPDEHQEAENAVSSGNR 20 0 Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6;Q9BXS6-7 Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 VPS(1)PPDEHQEAENAVSSGNR;VPS(1)PPDEHQEAENAVSSGNR;VPS(1)PPDEHQEAENAVSSGNR;VPS(1)PPDEHQEAENAVSSGNR ;;; 138.28 1.39E-05 27685700 2788.94 2269.47 2633.22 2222.54 2389.11 2341.27 2513.62 2082.29 2285.12 2879.65 TRUE FALSE FALSE 2462.024681 2339.389681 2775.579838 2313.184788 2212.870115 2296.614176 2610.571165 2319.329477 2190.926386 2862.521714 0.860089434 0.817247838 0.969627523 0.808093359 0.773049198 0.802304543 0.911983009 0.810239959 0.765383325 1 11.48307092 -9.441568157 0.364911364 1.067955724 0.830119882 0 0.091828115 1.827745916 0.288154118 0.176228104 0.021878465 3.62E-10 9.441568157 -0.237835842 SHVEDGDIAGAPASS(ph)PEAPPAEQDPVQLK ddPTM_HeLa_CUDC101_4h_R1 1 SHVEDGDIAGAPASSPEAPPAEQDPVQLK 29 0 A0A087WVV2;Q9P2E9-3;Q9P2E9;A0A087WU26;F8W7S5 A0A087WVV2 RRBP1 Ribosome-binding protein 1 1 0 SHVEDGDIAGAPAS(0.209)S(0.791)PEAPPAEQDPVQLK 139.25 2.29E-16 19168000 1773.1 1546.5 1649.5 1903.7 2033.5 1350.9 1559.2 1340.3 1351.7 1894.4 TRUE FALSE FALSE 1565.259906 1594.145832 1738.676959 1981.341114 1883.492756 1325.133833 1619.338866 1492.874334 1295.982354 1883.132025 0.831200301 0.846539601 0.923289996 1.052151994 1.000191559 0.703686102 0.859917863 0.792761376 0.688205785 1 10.87891843 -9.441330066 1.144501818 1.000759939 0.875955581 0 0.134916362 0.711886441 1.651890295 0.071094779 0.017314511 3.62E-10 9.441330066 -0.124804358 KLDFNSPGGSS(ph)PVENSDCSTNSR ddPTM_HeLa_CUDC101_4h_R1 2 KLDFNSPGGSSPVENSDCSTNSR 23 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 KLDFNSPGGS(0.024)S(0.976)PVENSDCSTNSR;KLDFNSPGGS(0.001)S(0.994)PVENS(0.005)DCSTNSR ; 190.54 1.85E-14 26878000 5767 4653.4 4924.7 4875.8 4804.2 4494.1 4416.6 4364.3 4869.8 4121.3 TRUE FALSE FALSE 5091.001002 4796.765738 5190.944178 5074.656199 4449.803737 4408.38253 4586.949741 4861.114271 4669.064783 4096.786324 1.242681604 1.170860611 1.267077111 1.23869194 1.08616935 1.076058691 1.119645834 1.186567686 1.139689604 1 12.00027693 -9.441143127 1.167707555 0.999817672 1.17739395 0.14647486 0.074443964 0.339849907 0.827478034 0.048619832 0.012085475 3.62E-10 9.441143127 0.177576278 ATVTPSPVK(ac)GK ddPTM_HeLa_CUDC101_4h_R1 2 ATVTPSPVKGK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 1 ; ATVTPSPVK(1)GK;ATVTPSPVK(1)GK 163.66 0.00023124 7032100 4232.5 4251.8 4256.6 7702 7662.6 7419.2 6498.8 5337.8 999.22 474.84 FALSE TRUE FALSE 3736.372766 4382.792918 4486.724672 8016.120851 7097.345264 7277.691121 6749.460893 5945.433576 958.0317287 472.0156306 7.91578186 9.28527073 9.50545783 16.98274449 15.03625051 15.41832653 14.29923175 12.59584046 2.029661025 1 8.882690824 -7.592462586 0.448931636 1.152598109 15.45523548 0.886017401 1.775835038 0.2108547 0.110302555 1.059830255 0.919521567 2.56E-08 7.592462586 14.30263737 AVAAPRPDR ddPTM_HeLa_CUDC101_4h_R1 1 AVAAPRPDR 9 1 O75534-2;O75534;O75534-3;O75534-4;E9PLT0 O75534-2 CSDE1 Cold shock domain-containing protein E1 0 0 96.034 0.026698 1601500 1279.4 1043 805.89 1025.6 874.41 1019.1 813.57 792.23 851.04 525.14 FALSE FALSE TRUE 1129.430671 1075.133594 849.4588511 1067.428401 809.9065164 999.6623654 844.9496674 882.4142609 815.959771 522.0164439 2.163592133 2.05957802 1.627264545 2.044817579 1.551496176 1.915001677 1.618626534 1.690395525 1.563092084 1 9.027951443 -9.432640328 1.155449501 0.998668582 1.857803366 0.350090762 0.26081435 0.220981125 0.526402984 0.151762456 0.037808187 3.69E-10 9.432640328 0.859134784 AVAFSPVTELK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 AVAFSPVTELKK 12 1 P17858;P17858-2 P17858 PFKL "ATP-dependent 6-phosphofructokinase, liver type" 0 1 AVAFSPVTELK(1)K 112.75 0.0043208 296000 178.28 0 0 107.21 167.56 163.56 0 93.139 0 0 FALSE TRUE FALSE 157.3822887 0 0 111.5824872 155.1994326 160.4403655 0 103.7415673 0 0 0 WASLADSYSDPGLT(ph)EDGLGR ddPTM_HeLa_CUDC101_4h_R1 1 WASLADSYSDPGLTEDGLGR 20 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 WASLADS(0.014)Y(0.013)S(0.086)DPGLT(0.887)EDGLGR 95.183 0.0060053 4993000 886.36 938.57 812.26 806.31 903.61 746.79 965.08 768.76 825.68 1073.8 TRUE FALSE FALSE 782.4622244 967.4862292 856.1732326 839.194807 836.9524905 732.546225 1002.303459 856.272531 791.6451209 1067.41299 0.73304544 0.906384163 0.802101193 0.786195048 0.784094346 0.68628191 0.939002493 0.80219422 0.741648386 1 10.05990276 -9.440965823 1.071872092 1.004540912 0.800509631 0 0.105368574 0.336900449 0.667003983 0.053680375 0.012238305 3.62E-10 9.440965823 -0.204031282 (ac)ADAAPQLGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 ADAAPQLGKR 10 1 Q96C86 Q96C86 DCPS m7GpppX diphosphatase 0 1 ; ADAAPQLGK(1)R;ADAAPQLGK(1)R 51.949 0.0016297 10292300 722.56 1091.76 1098.49 2142.96 2330.28 2893.7 2711.1 1543.65 203.676 342.02 FALSE TRUE FALSE 637.8626121 1125.395832 1157.877692 2230.359171 2158.379887 2838.507494 2815.668035 1719.372876 195.2803891 339.9856498 1.876145692 3.310127448 3.405666365 6.560156797 6.348444083 8.348903829 8.281726116 5.057192494 0.574378328 1 8.409330044 -6.505641161 0.982738879 1.331250509 7.396309282 0.866252584 0.996462941 0.114101183 0.219913065 0.174555205 0.318911368 3.12E-07 6.505641161 6.065058773 up TTSFFLNS(ph)PEKEHQEMDEGSQSLEK ddPTM_HeLa_CUDC101_4h_R1 1 TTSFFLNSPEKEHQEMDEGSQSLEK 25 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 TTSFFLNS(0.893)PEKEHQEMDEGS(0.102)QS(0.005)LEK 95.209 4.70E-06 6868200 1014 753.05 573.7 653.39 631.45 571.34 401.07 377.94 925.21 1099.9 TRUE FALSE FALSE 895.1404571 776.2505779 604.7159573 680.0380684 584.8691915 560.4426414 416.5394042 420.9631619 887.0724522 1093.357746 0.818707747 0.709969432 0.553081514 0.62197215 0.53492939 0.512588532 0.380972656 0.385018685 0.811328639 1 10.09454981 -6.501728251 0.290422787 1.041259684 0.256902862 0.864278133 0.070145938 0.281032355 0.055812293 0.03592657 0.081316902 3.15E-07 6.501728251 -0.784356823 HGAPAAPS(ph)PPPR ddPTM_HeLa_CUDC101_4h_R1 3 HGAPAAPSPPPR 12 0 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 HGAPAAPS(1)PPPR;HGAPAAPS(1)PPPR;HGAPAAPS(1)PPPR ;; 106.26 0.0066935 52481600 15011.9 14515.7 13907.1 14521 15068.3 14234.7 12287.6 12715.5 12893.4 16522.2 TRUE FALSE FALSE 13252.22784 14962.91151 14658.95989 15113.22915 13956.74153 13963.19681 12761.53685 14162.98112 12361.92859 16423.92522 0.806885544 0.911043573 0.892536936 0.92019593 0.849781118 0.850174159 0.777008947 0.862338383 0.752678086 1 14.00351134 -9.440913237 1.066065996 1.003510038 0.855419206 0 0.086907923 0.307825525 0.601409359 0.035523588 0.008054683 3.62E-10 9.440913237 -0.148090833 AVDDGVNTFK(ac)VLTR ddPTM_HeLa_CUDC101_4h_R1 1 AVDDGVNTFKVLTR 14 1 P50990-3;P50990-2;P50990 P50990-3 CCT8 T-complex protein 1 subunit theta 0 1 AVDDGVNTFK(1)VLTR 196.15 7.73E-15 496420 0 0 68.038 0 0 0 95.445 125.96 0 136.37 FALSE TRUE FALSE 0 0 71.71634008 0 0 0 99.12634562 140.2987773 0 135.5588652 0 0 0.529042051 0 0 0 0.731242073 1.034965711 0 1 7.082775654 -9.411378226 1.134371452 1.000655365 0.248990764 0 0.465625675 0.433740583 0.996934507 0.25629773 0.064704366 3.88E-10 9.411378226 -0.751664601 GFGGK(ac)FGVQMDR ddPTM_HeLa_CUDC101_4h_R1 1 GFGGKFGVQMDR 12 1 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 1 GFGGK(1)FGVQMDR 92.611 0.032964 2107600 370.21 572.67 242.45 627.61 696.24 751.3 633.54 623.84 304.02 250.62 FALSE TRUE FALSE 326.814545 590.3132839 255.5575804 653.2066486 644.8797623 736.9702043 657.97585 694.855424 291.4881669 249.1293011 1.311827005 2.36950564 1.025802984 2.621958339 2.588534385 2.958183566 2.641101818 2.789135685 1.170027635 1 7.960750902 -6.46948804 0.578544179 1.058938494 2.9425974 0.728566558 0.400535781 0.276398259 0.185574101 0.096694828 0.220451781 3.39E-07 6.46948804 1.883658906 AVDPEDDFQR ddPTM_HeLa_CUDC101_4h_R1 2 AVDPEDDFQR 10 0 H7C2Q8;Q99848 H7C2Q8 EBNA1BP2 Probable rRNA-processing protein EBP2 0 0 ; ; 157.99 0.00045601 26530000 6583.2 6383.6 6505.2 6176 7482.4 6638.7 6744 6919.9 7219.2 5923.1 FALSE FALSE TRUE 5811.527275 6580.27115 6856.890789 6427.883975 6930.438259 6512.077858 7004.118339 7707.633445 6921.62152 5887.869138 0.987034042 1.117598064 1.164579346 1.091716515 1.177070702 1.106016066 1.189584581 1.309070101 1.175573261 1 12.52352989 -2.431401943 0.204405114 0.961575555 1.896902112 0.248663554 0.077821434 10.57102192 0.204252979 0.052973616 2.84749247 0.003703378 2.431401943 0.935326557 QFKIFS(ph)DFR ddPTM_HeLa_CUDC101_4h_R1 1 QFKIFSDFR 9 1 M9MMK7;Q0VDD8-2;Q0VDD8-4 M9MMK7 DNAH14 1 0 QFKIFS(1)DFR 87.696 0.017928 63671000 4189.1 3079.8 2324.6 2820.9 2983.2 3041.7 2849.2 2735.7 2351.5 1235.4 TRUE FALSE FALSE 3698.060048 3174.684988 2450.274908 2935.948495 2763.135279 2983.68464 2959.094598 3047.12103 2254.570175 1228.051786 3.011322561 2.585139344 1.995253731 2.390736717 2.250015277 2.42960816 2.409584541 2.48126428 1.835891776 1 10.26215568 -9.440500379 1.145655558 0.991696919 2.478115474 0.544578496 0.345466912 0.178656017 0.415703627 0.212486233 0.051867033 3.63E-10 9.440500379 1.486418555 LCSSSSS(ph)DTSSR ddPTM_HeLa_CUDC101_4h_R1 1 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LCS(0.018)S(0.181)S(0.053)S(0.053)S(0.695)DTSSR 193.62 4.87E-16 6513700 2143.6 1462.3 1951.6 2054.6 2091.5 1889 1768.1 1437.8 2009.4 1606.1 TRUE FALSE FALSE 1892.330457 1507.35173 2057.109399 2138.395469 1937.214212 1852.970472 1836.296209 1601.47334 1926.571682 1596.546846 1.185264599 0.944132478 1.288474187 1.339387864 1.21337762 1.160611402 1.150167447 1.003085719 1.206711652 1 10.64073917 -9.440181566 0.564581667 0.96096593 1.172213341 0 0.128485118 1.786844522 0.722527059 0.206883408 0.02692077 3.63E-10 9.440181566 0.211247411 RREEGPPPPSPDGAS(ph)SDAEPEPPSGR ddPTM_HeLa_CUDC101_4h_R1 2 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 Q9NTJ3;C9JWF0;C9IYK2;C9JJ64;C9JR83;E9PD53;Q9NTJ3-2;F8WCB7 Q9NTJ3 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 0 RREEGPPPPS(0.031)PDGAS(0.456)S(0.456)DAEPEPPS(0.057)GR;RREEGPPPPS(0.008)PDGAS(0.496)S(0.496)DAEPEPPSGR ; 76.749 0.00013835 272670000 2686.89 2739.6 2328.99 2623.52 2821.1 2393.6 2235.72 2614.5 2520.72 3093 TRUE FALSE FALSE 2371.936827 2824.003829 2454.902244 2730.518485 2612.993073 2347.946068 2321.952469 2912.124112 2416.814855 3074.602698 0.771461246 0.918493902 0.798445355 0.888088236 0.849863651 0.763658364 0.755204069 0.947154607 0.786057612 1 11.58618428 -9.440013056 1.073181999 1.003792303 0.829160214 0 0.090904019 0.348103542 0.69154304 0.047475275 0.010853139 3.63E-10 9.440013056 -0.174632089 TQQSPIS(ph)NGSPELGIK ddPTM_HeLa_CUDC101_4h_R1 1 TQQSPISNGSPELGIK 16 0 Q15723-2;Q15723-3;Q15723-1;Q15723 Q15723-2 ELF2 ETS-related transcription factor Elf-2 1 0 T(0.319)QQS(0.236)PIS(0.434)NGS(0.011)PELGIK 91.592 0.0078578 9962000 1510.3 1583.2 1409.5 1198.9 1528.7 1541.3 1488.1 1437.2 1612.9 1837.2 TRUE FALSE FALSE 1333.264923 1631.976515 1485.701834 1247.796324 1415.930847 1511.90227 1545.496515 1600.805039 1546.415579 1826.272253 0.730047188 0.893610749 0.813516074 0.683247704 0.775312029 0.827862477 0.846257459 0.876542386 0.846760705 1 10.83468614 -9.439558479 1.089325265 1.00364899 0.798964553 0.176867471 0.076149299 0.306031977 0.630636923 0.049190515 0.011425751 3.63E-10 9.439558479 -0.204684438 S(ph)FDASDTLALPR ddPTM_HeLa_CUDC101_4h_R1 1 SFDASDTLALPR 12 0 Q5JXC2 Q5JXC2 MIIP Migration and invasion-inhibitory protein 1 0 S(0.998)FDAS(0.002)DTLALPR 88.101 0.023978 2494000 687.03 620.03 592.11 554.98 686.11 691.35 470.48 762.66 612.44 695.91 TRUE FALSE FALSE 606.4973849 639.1323894 624.1212576 577.6144832 635.4970322 678.1636506 488.6265712 849.4781316 587.194964 691.7706964 0.876731825 0.923907868 0.902208291 0.834979692 0.918652721 0.980330121 0.706341818 1.227976461 0.848828907 1 9.434150092 -9.439432655 1.144964644 1.000495615 0.909351693 0 0.132777175 1.067735333 2.481919417 0.077811513 0.019012726 3.64E-10 9.439432655 -0.091143922 NINMDNDLEVLTSS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 5 NINMDNDLEVLTSSPTR 17 0 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 NINMDNDLEVLT(0.017)S(0.23)S(0.673)PT(0.08)R;NINMDNDLEVLT(0.006)S(0.203)S(0.584)PT(0.207)R;NINMDNDLEVLT(0.196)S(0.196)S(0.601)PT(0.007)R;NINMDNDLEVLTS(0.035)S(0.964)PTR;NINMDNDLEVLTS(0.034)S(0.962)PT(0.005)R ;;;; 357.96 9.43E-246 198107000 12842.3 12081.8 10391.5 10374.47 12583.4 11751 11212.8 11321.9 12466.3 12400.67 TRUE FALSE FALSE 11336.94506 12454.02594 10953.29592 10797.58573 11655.14765 11526.86925 11645.28145 12610.73933 11952.43384 12326.91026 0.919690727 1.010312047 0.888567832 0.875936102 0.94550438 0.93509801 0.944704002 1.023025159 0.969621226 1 13.58952361 -9.439378954 1.008501847 1.002359155 0.93895589 0.105852839 0.044641668 0.753047955 1.284137578 0.036344964 0.007804602 3.64E-10 9.439378954 -0.063403265 GSGFPFLES(ph)ENEK ddPTM_HeLa_CUDC101_4h_R1 1 GSGFPFLESENEK 13 0 E9PM59;Q9H5J8 E9PM59 TAF1D TATA box-binding protein-associated factor RNA polymerase I subunit D 1 0 GSGFPFLES(1)ENEK 121.92 0.0020179 3079900 2257.7 2698.3 2088.2 2118.2 2415.9 1971.1 2037.8 2561.7 2592.8 3078.7 TRUE FALSE FALSE 1993.055828 2781.431425 2201.094408 2204.589352 2237.68387 1933.504552 2116.398629 2853.313573 2485.923687 3060.387755 0.65124291 0.908849351 0.71922076 0.720362754 0.731176586 0.631784174 0.691545908 0.932337273 0.81229043 1 11.57949874 -9.439104228 1.037366293 1.008172242 0.736713589 0.170476612 0.1097695 0.358186331 0.654989601 0.074885028 0.016558775 3.64E-10 9.439104228 -0.271458653 AVEHINK(ac)TIAPALVSK ddPTM_HeLa_CUDC101_4h_R1 2 AVEHINKTIAPALVSK 16 1 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 1 ; AVEHINK(1)TIAPALVSK;AVEHINK(1)TIAPALVSK 133.25 0.0058685 6339100 6639.9 5894.5 5584.6 5740 6721.9 5646.4 6117.7 7634.3 5386.5 8731.5 FALSE TRUE FALSE 5861.580987 6076.102558 5886.520368 5974.10201 6226.038829 5538.704328 6353.661738 8503.357853 5164.46619 8679.56465 0.67533122 0.700046927 0.678204565 0.688295122 0.717321557 0.638131583 0.732025395 0.97969866 0.595014427 1 13.08340697 -9.260448554 0.906909471 1.006391165 0.717481092 0 0.153134624 0.341456392 0.486695948 0.066936998 0.016772926 5.49E-10 9.260448554 -0.288910074 AVELAANTK ddPTM_HeLa_CUDC101_4h_R1 1 AVELAANTK 9 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 117.01 0.020833 1212300 1363.9 1410.3 1007.1 1354.7 1085.6 1174.3 1015 1070.5 925.14 650.9 FALSE FALSE TRUE 1204.02571 1453.749671 1061.546872 1409.950522 1005.517451 1151.902184 1054.14889 1192.361393 887.0053376 647.0284179 1.860854448 2.246809617 1.640649534 2.17911684 1.554054541 1.780296123 1.629215751 1.84282693 1.37089085 1 9.337685267 -9.087235292 0.851259117 0.99701817 1.83768662 0.526322914 0.239239515 0.271938533 0.356045372 0.142147751 0.041820423 8.18E-10 9.087235292 0.84066845 AVFDVDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 AVFDVDKK 8 1 P55809;E9PDW2;P55809-2 P55809 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" 0 1 AVFDVDK(1)K 109.71 0.0053904 1757000 3297.5 1312.4 1122.1 1169.8 2824.2 2630.9 2438.8 1767.2 2055.7 1785 FALSE TRUE FALSE 2910.972049 1352.833488 1182.76412 1217.5095 2615.864393 2580.719966 2532.865333 1968.370905 1970.963176 1774.382741 1.640554759 0.762424846 0.666577787 0.686159458 1.474239088 1.454432523 1.427462787 1.109327125 1.110788068 1 10.79310152 -13.52260816 0.005198569 0.000219072 2.34598243 0 0.345929103 657644.3079 276.6188287 67168.40303 57971.33098 3.00E-14 13.52260816 2.345763358 AVFHEEEQR ddPTM_HeLa_CUDC101_4h_R1 2 AVFHEEEQR 9 0 O14617;O14617-5;A0A2R8Y611;O14617-3;O14617-4;O14617-2 O14617 AP3D1 AP-3 complex subunit delta-1 0 0 ; ; 140.11 0.0010696 4293300 5297.3 3963.4 3196.8 4112.3 4194.3 3873 3908.9 3410.7 3138.5 3298.4 FALSE FALSE TRUE 4676.358524 4085.507656 3369.628678 4280.017369 3884.894845 3799.128978 4059.667582 3798.960301 3009.129702 3278.78097 1.426249136 1.246044702 1.02770777 1.305368491 1.18485952 1.158701668 1.238163702 1.158650223 0.917758682 1 11.67894381 -9.663539806 1.529071827 1.000658958 1.246674324 0.459846504 0.105877434 0.340343111 1.438125069 0.083580257 0.018984842 2.17E-10 9.663539806 0.246015365 VEEPSQCLASGTAISELIIEDNNAS(ph)PQKLR ddPTM_HeLa_CUDC101_4h_R1 2 VEEPSQCLASGTAISELIIEDNNASPQKLR 30 1 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 VEEPSQCLASGTAIS(0.001)ELIIEDNNAS(0.999)PQKLR;VEEPSQCLAS(0.003)GT(0.041)AIS(0.044)ELIIEDNNAS(0.912)PQKLR ; 68.25 4.00E-05 45994000 3413.6 2504.97 2307.8 2581.3 3068.6 3103.6 2379.82 2032.35 2596.4 1821.65 TRUE FALSE FALSE 3013.462983 2582.145157 2432.566649 2686.576571 2842.235492 3044.404001 2471.610455 2263.704509 2489.375293 1810.814745 1.664147584 1.42595766 1.343354783 1.483628615 1.569589324 1.681234378 1.364916241 1.250102759 1.374726653 1 10.82242324 -9.438960236 1.119797198 0.994617843 1.491370377 0.196479157 0.172507771 0.265236262 0.58452919 0.104498157 0.0249849 3.64E-10 9.438960236 0.496752534 AVFPSIVGR ddPTM_HeLa_CUDC101_4h_R1 2 AVFPSIVGR 9 0 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;P63267-2;C9JUM1;C9JZR7;C9JTX5;Q6S8J3;A5A3E0;P0CG38;F8WCH0;P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P60709;P63267;P63261 ACTB;ACTG2;POTEE;POTEF;POTEI;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ; ; 138.83 0.020834 1476830 692.42 529.51 395.14 365.88 402.75 599.42 410.8 209.076 584.18 283.017 FALSE FALSE TRUE 611.2555772 545.8235755 416.5024636 380.8021679 373.0399349 587.9870622 426.6446936 232.8763667 560.0998531 281.3336023 2.172707321 1.940129338 1.480457579 1.353560914 1.325970065 2.089999408 1.516508125 0.827758806 1.990874352 1 8.136138067 -4.272698382 5.072860955 1.591845948 0.797233679 0.300518811 0.368457822 0.202065017 16.337477 0.065362807 0.54894312 5.34E-05 4.272698382 -0.794612268 AVFPSIVGRPR ddPTM_HeLa_CUDC101_4h_R1 4 AVFPSIVGRPR 11 1 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;P63267-2;C9JUM1;C9JZR7;C9JTX5;Q6S8J3;A5A3E0;P0CG38;F8WCH0;P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P60709;P63267;P63261 ACTB;ACTG2;POTEE;POTEF;POTEI;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;; ;;; 215.83 6.90E-24 166593100 15724.7 10551.22 7235.12 9858.76 9814.61 9462.79 8733.64 9530.3 8074.05 2417.58 FALSE FALSE TRUE 13881.4745 10876.29058 7626.272472 10260.84285 9090.605774 9282.303047 9070.49942 10615.19083 7741.234242 2403.200127 5.776245744 4.525753166 3.173382186 4.269658083 3.782708595 3.862476098 3.774342103 4.41710647 3.221219138 1 11.23074108 -9.495013686 1.238710875 0.998774418 4.316345558 0.370562346 0.925299144 0.20185593 0.553964409 0.565814473 0.13737728 3.20E-10 9.495013686 3.31757114 AVFVDLEPTVIDEIR ddPTM_HeLa_CUDC101_4h_R1 2 AVFVDLEPTVIDEIR 15 0 P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 P68366-2 TUBA4A Tubulin alpha-4A chain 0 0 ; ; 326.79 3.14E-166 121773000 8458.4 8271.1 7137.2 6806.5 8429.1 8035.7 7590.2 7321.3 7681.4 7389.5 FALSE FALSE TRUE 7466.919174 8525.922787 7523.058621 7084.09849 7807.302086 7882.432411 7882.956557 8154.727198 7364.769441 7345.546925 1.016523242 1.160692713 1.024165892 0.96440722 1.062861917 1.073089927 1.073161282 1.110159295 1.002616894 1 12.8426542 -1.000000001 0.118608141 0.973959273 1.350782269 0.220305433 0.049124848 100.3663738 0.820975036 0.235659544 6.265671079 0.1 1.000000001 0.376822996 AVFVDLEPTVIDEVR ddPTM_HeLa_CUDC101_4h_R1 4 AVFVDLEPTVIDEVR 15 0 Q9BQE3;F5H5D3;A0A1W2PQM2;F8VVB9;F8VQQ4;F8VS66;F8VRZ4;F8VX09;F8VWV9;F8VRK0;P68363;P68363-2;Q71U36-2;Q71U36 Q9BQE3;P68363 TUBA1C;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain 0 0 ;;; ;;; 321.03 7.62E-166 226508000 14755.3 12612.6 12241.5 12058.6 13710.4 13576.9 12543.9 12127 14203.2 12649.3 FALSE FALSE TRUE 13025.7061 13001.17926 12903.31252 12550.40183 12699.01111 13317.94325 13027.72242 13507.48866 13617.73808 12574.0614 1.035918761 1.03396817 1.026184946 0.998118383 1.0099371 1.05916003 1.036079116 1.074234349 1.083002353 1 13.61816309 -5.258747929 24.86233798 1.017489134 1.054449962 0.161855769 0.025432327 140.0690149 1293885.369 0.002539034 0.006146867 5.51E-06 5.258747929 0.036960828 TPTHQPPKPGS(ph)PGRPACPLSNLLLQSYEER ddPTM_HeLa_CUDC101_4h_R1 1 TPTHQPPKPGSPGRPACPLSNLLLQSYEER 30 2 Q96F63 Q96F63 CCDC97 Coiled-coil domain-containing protein 97 1 0 T(0.042)PT(0.042)HQPPKPGS(0.913)PGRPACPLS(0.002)NLLLQSYEER 75.703 1.13E-05 25913000 935.71 862.34 739.42 787.11 1229.2 848.98 739.68 807.88 988.45 980.83 TRUE FALSE FALSE 826.0274922 888.9076733 779.3952818 819.211748 1138.524365 832.787121 768.2097054 899.8457936 947.7056726 974.9959795 0.847211178 0.911703937 0.799383073 0.840220642 1.167722113 0.854144159 0.787910639 0.922922568 0.972009826 1 9.92925246 -9.438429983 1.151110167 1.000432777 0.887726406 0.119152071 0.101781576 0.794333048 1.870996361 0.071678899 0.017635525 3.64E-10 9.438429983 -0.112706371 YAPS(ph)GFYIASGDVSGK ddPTM_HeLa_CUDC101_4h_R1 1 YAPSGFYIASGDVSGK 16 0 D6RD66;O75083 D6RD66 WDR1 WD repeat-containing protein 1 1 0 YAPS(1)GFYIASGDVSGK 82.707 0.013554 10055000 1229.8 1382.1 1057.7 851.95 1277.1 1476.2 1188.5 1219.2 1138.3 1563.1 TRUE FALSE FALSE 1085.644708 1424.680863 1114.882461 886.6962034 1182.890877 1448.043945 1234.340843 1357.9888 1091.378792 1553.802612 0.698701817 0.916899516 0.71751872 0.570662063 0.761287739 0.931935584 0.794400031 0.873977679 0.702392173 1 10.60158753 -9.438005823 1.084737884 1.00422139 0.775204705 0 0.137455554 0.45499445 0.928654291 0.081638548 0.018926526 3.65E-10 9.438005823 -0.229016685 S(ph)EVLAEESIVCLQK ddPTM_HeLa_CUDC101_4h_R1 2 SEVLAEESIVCLQK 14 0 O43663-2;O43663-4;O43663;H0YLA0;H0YM42;O43663-3 O43663-2;O43663-3 PRC1 Protein regulator of cytokinesis 1 1 0 S(1)EVLAEESIVCLQK;S(1)EVLAEESIVCLQK ; 168 2.36E-06 26881000 4288.3 3090.1 2986.8 3070.9 3773.9 3498.4 2812.8 1692.93 3340.6 1609.94 TRUE FALSE FALSE 3785.631975 3185.302318 3148.275443 3196.144576 3495.506916 3431.673849 2921.290638 1885.646308 3202.899054 1600.364005 2.365481829 1.990361135 1.967224602 1.997136005 2.184194911 2.144308318 1.825391366 1.178260884 2.001356594 1 10.64418437 -9.437959973 1.145210961 0.994921972 2.005161614 0 0.425671493 0.276821672 0.644176338 0.223457189 0.054734107 3.65E-10 9.437959973 1.010239642 AVGHPFVIQLGR ddPTM_HeLa_CUDC101_4h_R1 1 AVGHPFVIQLGR 12 0 O14980 O14980 XPO1 Exportin-1 0 0 99.568 0.0078049 828660 1193.4 752.82 448.79 746.19 877.59 946.59 756.63 588.38 434.69 368.83 FALSE FALSE TRUE 1053.511461 776.0134919 473.0529449 776.6228535 812.8519341 928.5353729 785.8134726 655.3588009 416.7718942 366.6361828 2.873451969 2.1165764 1.290251664 2.118238434 2.217053232 2.532579752 2.143305842 1.787490793 1.136745127 1 8.51820536 -6.021785071 23.71917703 1.879732328 2.190779364 0.111114815 0.547670838 1220.732002 1329111.775 0.111307156 0.185844543 9.51E-07 6.021785071 0.311047036 AVGK(ac)LTPEHLIK ddPTM_HeLa_CUDC101_4h_R1 2 AVGKLTPEHLIK 12 1 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;Q96L91-4;A0A0A0MR70 Q96L91-3 EP400 E1A-binding protein p400 0 1 ; AVGK(1)LTPEHLIK;AVGK(1)LTPEHLIK 151.16 2.18E-12 0 4387 4809 4432.4 4662.8 4642.9 4732.2 4811.6 5074.8 3027 3547 FALSE TRUE FALSE 3872.76251 4957.15959 4672.028951 4852.969138 4300.402517 4641.941169 4997.185024 5652.494719 2902.225779 3525.902286 1.098374883 1.405926537 1.325059112 1.376376526 1.219660152 1.316525755 1.417278364 1.60313425 0.823115771 1 11.78377678 -1.0000002 0.093853193 0.723536768 2.999329927 0.761777706 0.105919045 50.48509365 0.34132054 1.052762098 14.85467164 0.099999954 1.0000002 2.275793159 AVGK(ac)VIPELNGK ddPTM_HeLa_CUDC101_4h_R1 2 AVGKVIPELNGK 12 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 ; AVGK(1)VIPELNGK;AVGK(1)VIPELNGK 183.33 1.06E-07 2325990 2221.11 1842.09 1633.97 1637.91 2004.94 2111.51 1666.61 1870.94 1704.72 1849.58 FALSE TRUE FALSE 1960.754853 1898.842609 1722.307361 1704.711049 1857.039571 2071.236465 1730.891706 2083.920247 1634.45072 1838.578616 1.066451462 1.032777491 0.936760248 0.927189642 1.010040884 1.126542236 0.94142926 1.133440925 0.88897516 1 10.84437515 -4.230364975 23.23587523 1.019227604 1.133441433 0.177778623 0.0725771 5727.380733 4282463.516 0.008506577 1.306888813 5.88E-05 4.230364975 0.114213829 GS(ph)PSGGSTAEASDTLSIR ddPTM_HeLa_CUDC101_4h_R1 3 GSPSGGSTAEASDTLSIR 18 0 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 GS(0.983)PS(0.017)GGSTAEASDTLSIR;GS(0.958)PS(0.041)GGSTAEASDTLSIR;GS(0.997)PS(0.003)GGSTAEASDTLSIR ;; 245.04 4.51E-56 47128000 2458.86 2298.8 2210.43 2157.96 2267.45 2218.43 2167.42 2404.34 2743.42 2580.06 TRUE FALSE FALSE 2170.636158 2369.623303 2329.932532 2245.970936 2100.184731 2176.117144 2251.018115 2678.040347 2630.335066 2564.713688 0.846346385 0.92393288 0.908457167 0.875719947 0.818876875 0.84848346 0.877687878 1.044186865 1.025586239 1 11.32458206 -9.437438962 1.093851855 1.001893143 0.885529051 0.379434479 0.059756422 0.480699341 1.00154047 0.043951298 0.010285447 3.65E-10 9.437438962 -0.116364092 VKEEASS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 1 VKEEASSPLK 10 1 A0A590UJ84;B1AKN3;Q9P2R6-2;Q9P2R6;D6RA28 A0A590UJ84 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 VKEEAS(0.03)S(0.97)PLK 129.74 0.012244 19639000 4461.7 4188.6 4306.2 4427.8 4235.6 3832.8 3770.3 3753.7 3988.8 4787.5 TRUE FALSE FALSE 3938.706289 4317.645801 4539.006198 4608.384823 3923.148227 3759.695726 3915.721734 4181.006035 3824.379976 4759.023737 0.827629049 0.907254521 0.953768346 0.968346677 0.824359878 0.790014073 0.82279937 0.878542799 0.803605989 1 12.21644994 -9.437136762 1.012426121 1.004905615 0.868697419 0 0.082078754 0.49657136 0.855905499 0.05152308 0.011146939 3.65E-10 9.437136762 -0.136208196 AVGPTAEADK(ac)SAAEK ddPTM_HeLa_CUDC101_4h_R1 2 AVGPTAEADKSAAEK 15 1 Q13123;D6REL4;E7EQZ7 Q13123 IK Protein Red 0 1 ; AVGPTAEADK(1)SAAEK;AVGPTAEADK(1)SAAEK 222.1 9.98E-27 3812400 1757.51 1384.92 1570.07 1677.98 1686.18 2039.15 1534.74 2423.18 1585.12 1510.52 FALSE TRUE FALSE 1551.497342 1427.587744 1654.952733 1746.415277 1561.793861 2000.256611 1593.935436 2699.025016 1519.780683 1501.53536 1.03327393 0.950751998 1.102173667 1.163086347 1.040131257 1.332140864 1.061537063 1.797510128 1.012151111 1 10.55222273 -1.066484059 0.834332209 1.030199918 200 0.786013483 0.110404442 156.450837 0.500279339 0.015799565 58959.40584 0.085805661 1.066484059 198.9698001 HPEPVPEEGS(ph)EDELPPQVHKV ddPTM_HeLa_CUDC101_4h_R1 3 HPEPVPEEGSEDELPPQVHKV 21 1 Q7Z3C6;H7C152;Q7Z3C6-2 Q7Z3C6 ATG9A Autophagy-related protein 9A 1 0 HPEPVPEEGS(1)EDELPPQVHKV;HPEPVPEEGS(1)EDELPPQVHKV;HPEPVPEEGS(1)EDELPPQVHKV ;; 92.01 0.00029667 65786000 13959.5 10553.4 10429.8 11218.2 11095.5 11516.8 11594.2 8853.1 10955.2 8358.1 TRUE FALSE FALSE 12323.18857 10878.53775 10993.66654 11675.72669 10277.00707 11297.13623 12041.39218 9860.901119 10503.62202 8308.385649 1.483222986 1.309344342 1.323201281 1.405294263 1.236943915 1.359726992 1.44930588 1.186861267 1.264219364 1 13.02035247 -9.43705513 1.125531605 0.996725823 1.357475583 0.243305802 0.116436383 0.220646705 0.4926812 0.063188229 0.015230337 3.66E-10 9.43705513 0.36074976 YWGPAS(ph)PTHK ddPTM_HeLa_CUDC101_4h_R1 2 YWGPASPTHK 10 0 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;Q9H6S3-2 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 0 YWGPAS(0.921)PT(0.079)HK;Y(0.005)WGPAS(0.765)PT(0.23)HK ; 144.55 0.00085277 191287000 4145.8 4073.7 4299.8 3941 3843.9 3926.2 3592 3632.4 3964.9 4831.5 TRUE FALSE FALSE 3659.835609 4199.205868 4532.260194 4101.731014 3560.343155 3851.314276 3730.544643 4045.897733 3801.465144 4802.762023 0.762027265 0.874331447 0.943677861 0.854035864 0.741311591 0.801895713 0.776749842 0.84241062 0.791516449 1 12.22964861 -9.436916773 1.041629679 1.005296244 0.820207438 0 0.084991956 0.348089204 0.643648285 0.049654961 0.011063555 3.66E-10 9.436916773 -0.185088805 ESGVVAVSPEKS(ph)ES(ph)PQKEDGLSSQLK ddPTM_HeLa_CUDC101_4h_R1 1 ESGVVAVSPEKSESPQKEDGLSSQLK 26 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 2 0 ES(0.014)GVVAVS(0.384)PEKS(0.679)ES(0.714)PQKEDGLS(0.115)S(0.094)QLK 44.183 0.029147 27809000 2840.9 2697.4 2466.5 2571.3 2584.4 2876.7 2242.7 2597.8 2996.5 2938.4 TRUE FALSE FALSE 2507.894009 2780.503697 2599.846451 2676.168728 2393.753961 2821.83174 2329.20169 2893.523051 2872.983002 2920.922266 0.858596628 0.951926633 0.890077247 0.916206761 0.819519913 0.966075603 0.797419951 0.99061967 0.983587627 1 11.51220825 -9.436906291 1.053891402 1.002789171 0.893561248 0.280448653 0.058957442 0.48422139 0.921480437 0.040955148 0.009235093 3.66E-10 9.436906291 -0.109227922 AVK(ac)LDMVEDTEGEPPFLPESFDR ddPTM_HeLa_CUDC101_4h_R1 1 AVKLDMVEDTEGEPPFLPESFDR 23 1 Q8TEA1 Q8TEA1 NSUN6 Putative methyltransferase NSUN6 0 1 AVK(1)LDMVEDTEGEPPFLPESFDR 51.876 0.030745 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 AY(ph)NSRLQR ddPTM_HeLa_CUDC101_4h_R1 1 AYNSRLQR 8 1 K7EIT2;Q9Y5L4 K7EIT2 TIMM13 Mitochondrial import inner membrane translocase subunit Tim13 1 0 AY(0.723)NS(0.277)RLQR 86.833 0.0019035 0 1169.4 887.19 994.53 1003.5 976.15 858 1116.9 799.75 938.1 854.15 TRUE FALSE FALSE 1032.324705 914.5232723 1048.2973 1044.427067 904.1413593 841.6350795 1159.979207 890.7903073 899.4311209 849.0694778 1.215830661 1.077088856 1.234642544 1.230084339 1.064861455 0.991244064 1.366177018 1.049137121 1.059313925 1 9.729738801 -9.436606703 1.100180458 0.997624821 1.160602036 0.166469272 0.107573216 0.585136493 1.236772862 0.075063248 0.017692058 3.66E-10 9.436606703 0.162977214 AVLFCLSEDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 AVLFCLSEDKK 11 1 P23528;G3V1A4;E9PP50;E9PK25;E9PQB7;E9PLJ3;E9PS23 P23528 CFL1 Cofilin-1 0 1 AVLFCLSEDK(1)K 218.47 1.17E-14 1262200 1174.5 467.37 501.94 265.34 893.92 863.93 1151.6 689.98 1081.4 503.98 FALSE TRUE FALSE 1036.82689 481.7691157 529.0763947 276.1617121 827.9773025 847.4519747 1196.017598 768.5245342 1036.824234 500.9823045 2.06958785 0.961648967 1.056078009 0.551240452 1.652707681 1.691580655 2.387344996 1.534035289 2.069582548 1 8.968615836 -9.730823859 1.65579491 1.00007312 1.571926935 0 0.608575058 0.671619297 3.32825755 0.411310761 0.089597598 1.86E-10 9.730823859 0.571853815 AVLFCLSEDKK ddPTM_HeLa_CUDC101_4h_R1 5 AVLFCLSEDKK 11 1 P23528;G3V1A4;E9PP50;E9PK25;E9PQB7;E9PLJ3;E9PS23 P23528 CFL1 Cofilin-1 0 0 ;;;; ;;;; 223.84 9.95E-19 141636660 9155.87 8865.1 7859.31 7936.02 9405.47 7910.2 8142.4 8131.85 8091.5 4432.37 FALSE FALSE TRUE 8082.632798 9138.223223 8284.208072 8259.685198 8711.647216 7759.326114 8456.455096 9057.546934 7757.964945 4406.006066 1.834457937 2.074037822 1.88020805 1.874642267 1.977220886 1.761079308 1.919301737 2.055727295 1.760770373 1 12.10525577 -8.976094744 0.616875903 0.931665519 1.937640542 0.263476454 0.248805299 0.1725602 0.111777126 0.092210066 0.023268316 1.06E-09 8.976094744 1.005975023 AVLHVALR ddPTM_HeLa_CUDC101_4h_R1 2 AVLHVALR 8 0 K7EQ48;A0A2U3TZU2;P06744;A0A0J9YXP8;A0A0J9YYH3;A0A2R8Y6C7;P06744-2;K7EP41;K7EPY4;A0A0J9YX90;K7ERC6;CON__Q3ZBD7;A0A2R8YF08;K7ELR7 K7EQ48 GPI Glucose-6-phosphate isomerase 0 0 ; ; 79.469 0.02923 12115500 13398.1 6114.3 2528.84 6311.7 5239.6 5817.6 3957.6 3078.1 2866.5 948.29 FALSE FALSE TRUE 11827.59503 6302.674336 2665.55674 6569.118407 4853.085147 5706.638973 4110.245958 3428.498462 2748.341657 942.6495289 12.54718182 6.686126861 2.827728289 6.968781298 5.148345167 6.053828913 4.360311899 3.637087122 2.915549812 1 9.880577676 -4.377937403 0.81803442 6.340236244 2.258289575 0 3.04391571 6.413091949 3.448748521 0.707662692 22.74621911 4.19E-05 4.377937403 -4.081946669 AVLSAEQLRDEEVHAGLGELLR ddPTM_HeLa_CUDC101_4h_R1 3 AVLSAEQLRDEEVHAGLGELLR 22 1 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PQ34;E9PJH8;E9PIG2;E9PRS3;E9PNX1 P50454 SERPINH1 Serpin H1 0 0 ;; ;; 83.423 0.00045574 71635600 10030.27 9140.24 8345.14 8381.43 10095.8 8965.33 9311.37 8726.26 9542.8 8469.49 FALSE FALSE TRUE 8854.536956 9421.839961 8796.303511 8723.260943 9351.052948 8794.331268 9670.51266 9719.622166 9149.441745 8419.113097 1.051718495 1.119101246 1.04480168 1.036125877 1.110693352 1.044567423 1.148637932 1.15447103 1.086746506 1 13.03945255 -1 0.118364867 0.970053018 1.507028136 0.266358059 0.042302295 47.31395642 0.386401263 0.158904849 4.199375433 0.1 1 0.536975119 AGAES(ph)PTMSVDGR ddPTM_HeLa_CUDC101_4h_R1 3 AGAESPTMSVDGR 13 0 O75362 O75362 ZNF217 Zinc finger protein 217 1 0 AGAES(0.47)PT(0.47)MS(0.059)VDGR;AGAES(0.775)PT(0.224)MS(0.001)VDGR;AGAES(0.677)PT(0.318)MS(0.005)VDGR ;; 195.72 2.07E-16 115864000 8379.5 7464.6 7255.5 8445.4 8335.6 7180.7 7499.99 7074.8 7606.6 8683.2 TRUE FALSE FALSE 7397.267712 7694.575478 7647.754277 8789.839916 7720.699395 7043.740111 7789.267127 7880.166635 7293.052728 8631.55194 0.857003209 0.891447509 0.886023085 1.018338298 0.89447407 0.816045615 0.902417917 0.912948991 0.844929484 1 13.07540426 -9.4365284 1.136727874 1.000695499 0.894420581 0 0.067778422 0.426560293 0.975630623 0.036103688 0.008796459 3.66E-10 9.4365284 -0.106274918 KPNAGGS(ph)PAPVR ddPTM_HeLa_CUDC101_4h_R1 1 KPNAGGSPAPVR 12 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 KPNAGGS(1)PAPVR 71.98 0.027699 39887000 1491.9 1833.4 2270.7 1924.1 1962.3 2180.4 1473.7 1204 2016.6 3169.1 TRUE FALSE FALSE 1317.021744 1889.884881 2393.46091 2002.573115 1817.545038 2138.812503 1530.541103 1341.058493 1933.474894 3150.250052 0.418068954 0.599915832 0.759768549 0.635687035 0.576952625 0.678934201 0.485847497 0.425699062 0.613752833 1 11.62125063 -9.436197959 1.110643034 1.005344426 0.56771265 0.101397488 0.154742805 0.244464572 0.528784898 0.084487893 0.020118025 3.66E-10 9.436197959 -0.437631775 AVLVDLEPGTMDSVR ddPTM_HeLa_CUDC101_4h_R1 1 AVLVDLEPGTMDSVR 15 0 P68371;Q3ZCM7;M0R0X0;M0QY85;M0QY37;M0QX14;M0QZL7;M0R278;A0A075B724;P04350 P68371;P04350 TUBB4B;TUBB8;TUBB4A Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-4A chain 0 0 99.539 0.033478 9399000 1670.8 1323.7 1527.5 1521.5 1671.4 1339.4 1492.3 1331.5 1584.5 1434 FALSE FALSE TRUE 1474.951357 1364.481628 1610.08127 1583.553346 1548.104152 1313.853177 1549.858511 1483.072578 1519.186239 1425.470504 1.034711944 0.957214915 1.129508654 1.110898712 1.086030295 0.921697904 1.087261018 1.040409166 1.065743721 1 10.47722247 -6.771601015 24.99993554 1.012411502 1.060604786 0.137036715 0.059058933 311.3928395 766095.9871 0.009229573 0.012206637 1.69E-07 6.771601015 0.048193285 AVNEK(ac)SCNCLLLK ddPTM_HeLa_CUDC101_4h_R1 2 AVNEKSCNCLLLK 13 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 1 ; AVNEK(1)SCNCLLLK;AVNEK(1)SCNCLLLK 211.77 5.11E-48 448500 220.31 166.51 165 364.19 205.066 0 0 349 0 0 FALSE TRUE FALSE 194.4855958 171.6399757 173.9203991 379.0432424 189.9386897 0 0 388.7287493 0 0 0 VNPVTSLSENYTCS(ph)DSEESSEKDK ddPTM_HeLa_CUDC101_4h_R1 3 VNPVTSLSENYTCSDSEESSEKDK 24 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 VNPVTSLS(0.001)ENY(0.018)T(0.26)CS(0.715)DS(0.006)EESSEKDK;VNPVTSLSENY(0.007)T(0.116)CS(0.876)DSEESSEKDK;VNPVTSLS(0.006)ENY(0.027)T(0.439)CS(0.493)DS(0.034)EES(0.001)SEKDK ;; 114.33 2.18E-07 887700000 13966 11003.7 10355 10519.1 11983.2 11884.3 10222.4 9107.8 10545.9 8206 TRUE FALSE FALSE 12328.92665 11342.71095 10914.82262 10948.11437 11099.22321 11657.62678 10616.68139 10144.59514 10111.19354 8157.190347 1.511418286 1.39051689 1.338061533 1.342142809 1.360667428 1.429122808 1.301512033 1.243638398 1.239543655 1 12.9938566 -9.435940397 1.142816639 0.998085542 1.377189568 0.430453289 0.098644257 0.18897549 0.437906566 0.057146166 0.014010836 3.66E-10 9.435940397 0.379104026 TS(ph)PITR ddPTM_HeLa_CUDC101_4h_R1 1 TSPITR 6 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.225)S(0.774)PIT(0.001)R 104.75 0.02045 39197000 3327.5 1189.6 3490.7 3873.6 1594.4 1496 1735 560.62 3687.9 4969.9 TRUE FALSE FALSE 2937.455494 1226.250166 3679.417801 4031.582151 1476.784288 1467.466293 1801.919531 624.4387147 3535.883201 4940.338814 0.594585838 0.248211755 0.744770337 0.816053778 0.298923686 0.297037581 0.364736023 0.126395929 0.715716742 1 12.27039427 -9.435927699 0.127584145 1.705040613 1.15E-13 0.473902154 0.200473657 10.83404191 0.354687191 3.821074506 1.248074316 3.66E-10 9.435927699 -1.705040613 (ac)AAGGDHGS(ph)PDSYR ddPTM_HeLa_CUDC101_4h_R1 3 AAGGDHGSPDSYR 13 0 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;B4DEP1;A0A1W2PRX2;A0A096LP72;A0A096LNY4;A0A096LNY5;A0A1B0GTG9;A0A1B0GWF8;P30566-2 A0A1B0GWJ0 ADSL Adenylosuccinate lyase 1 0 AAGGDHGS(0.995)PDS(0.005)YR;AAGGDHGS(0.937)PDS(0.063)YR;AAGGDHGS(0.78)PDS(0.22)YR ;; 103.13 5.41E-17 105932000 448.06 555.31 590.46 437.12 601.68 621.464 477.09 552.29 741.73 918.47 TRUE FALSE FALSE 395.539086 572.4184429 622.3820536 454.947643 557.2952651 609.6106096 495.4915211 615.1604612 711.1555755 913.0068996 0.433226831 0.626959603 0.681683845 0.498295953 0.610395459 0.667695512 0.542702932 0.673774165 0.778915883 1 9.834481952 -9.435442128 1.120471145 1.004159093 0.579776294 0.549379739 0.100602759 0.184652077 0.40812666 0.06205938 0.014926893 3.67E-10 9.435442128 -0.424382799 LSVPT(ph)S(ph)DEEDEVPAPKPR ddPTM_HeLa_CUDC101_4h_R1 3 LSVPTSDEEDEVPAPKPR 18 1 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 2 0 LS(0.117)VPT(0.889)S(0.994)DEEDEVPAPKPR;LS(0.536)VPT(0.807)S(0.657)DEEDEVPAPKPR;LS(0.188)VPT(0.951)S(0.861)DEEDEVPAPKPR ;; 213 4.02E-43 123190000 29963.2 27538.5 27662 26322.9 27830.5 26556 26430 24731.2 26841.8 31577.4 TRUE FALSE FALSE 26450.95912 28386.92854 29157.49139 27396.46164 25777.49946 26049.48855 27449.41395 27546.49984 25735.36964 31389.57622 0.842666971 0.904342523 0.92889089 0.872788516 0.821212089 0.829877038 0.874475455 0.877568389 0.81986993 1 14.93799793 -9.435299303 0.739560129 1.01800708 0.86631007 0 0.064080183 0.438816761 0.344046973 0.043171955 0.006896812 3.67E-10 9.435299303 -0.15169701 EADDDEEVDDNIPEMPS(ph)PKK ddPTM_HeLa_CUDC101_4h_R1 6 EADDDEEVDDNIPEMPSPKK 20 1 P26358;P26358-2;P26358-3 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 EADDDEEVDDNIPEMPS(1)PKK;EADDDEEVDDNIPEMPS(1)PKK;EADDDEEVDDNIPEMPS(1)PKK;EADDDEEVDDNIPEMPS(1)PKK;EADDDEEVDDNIPEMPS(1)PKK;EADDDEEVDDNIPEMPS(1)PKK ;;;;; 154.13 7.01E-06 267860000 16897.7 16562.62 17842.09 16461.92 20410.4 16920.3 15281.5 15682.58 19891.2 22913.9 TRUE FALSE FALSE 14916.97722 17072.89469 18806.68735 17133.30825 18904.76546 16597.57347 15870.91257 17467.82152 19071.27632 22777.6071 0.65489659 0.749547334 0.825665632 0.752199657 0.829971532 0.728679417 0.696776992 0.766885715 0.837281819 1 14.47532857 -9.43529015 1.124604258 1.002288314 0.744317825 0.421243934 0.069379933 0.202564951 0.451737871 0.04143518 0.010005676 3.67E-10 9.43529015 -0.257970488 SSS(ph)PEDPGAEV ddPTM_HeLa_CUDC101_4h_R1 2 SSSPEDPGAEV 11 0 Q9Y5U2-2;Q9Y5U2 Q9Y5U2-2 TSSC4 Protein TSSC4 1 0 S(0.209)S(0.209)S(0.582)PEDPGAEV;S(0.033)S(0.033)S(0.935)PEDPGAEV ; 155.06 0.00025313 22052000 7933.3 7646.3 7304 6484.5 7350 7520 6733.4 6989.5 7834.8 8709.7 TRUE FALSE FALSE 7003.3706 7881.87344 7698.876333 6748.965938 6807.805143 7376.568529 6993.109494 7785.156427 7511.846228 8657.894317 0.808899987 0.910368405 0.88923196 0.77951586 0.786311878 0.852004917 0.807714813 0.899197443 0.867629698 1 13.07980048 -9.435213358 0.725905373 1.02295776 0.836709025 0.130491557 0.060361111 0.49108986 0.367499696 0.058671825 0.009222353 3.67E-10 9.435213358 -0.186248735 KGNS(ph)PNSEPPTPK ddPTM_HeLa_CUDC101_4h_R1 2 KGNSPNSEPPTPK 13 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 KGNS(0.983)PNS(0.017)EPPTPK;KGNS(0.997)PNS(0.003)EPPTPK ; 98.552 0.0056641 142226000 10747.9 9240.5 10587.2 10022.7 10099.6 10154.3 9522.9 8778.8 10529.8 11237.2 TRUE FALSE FALSE 9488.047455 9525.188852 11159.57606 10431.46903 9354.572629 9960.623646 9890.201443 9778.143107 10095.75719 11170.36063 0.849394909 0.852719904 0.999034536 0.933852484 0.837445892 0.89170117 0.885396789 0.875365033 0.903798679 1 13.44738814 -9.434758734 1.134963564 1.000730612 0.888610157 0.074681986 0.053110758 0.379245377 0.864799862 0.033816914 0.008248503 3.67E-10 9.434758734 -0.112120455 NNS(ph)PPTVGAFGHTR ddPTM_HeLa_CUDC101_4h_R1 2 NNSPPTVGAFGHTR 14 0 F5H1D4;Q86XL3-3;Q86XL3 F5H1D4 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 1 0 NNS(0.999)PPT(0.001)VGAFGHTR;NNS(0.922)PPT(0.078)VGAFGHTR ; 93.812 0.0070878 75511000 6563.3 5833.9 5458.95 5769 6174.3 5881 5529.6 5246.8 6359.9 6674.3 TRUE FALSE FALSE 5793.959923 6013.635544 5754.077349 6004.284756 5718.83419 5768.829723 5742.878524 5844.074504 6097.74223 6634.600967 0.873294408 0.906405008 0.867283108 0.904995611 0.861971084 0.869506659 0.865595166 0.880847926 0.919081986 1 12.69579398 -9.434695018 0.524891169 1.032588989 0.874304686 0.465090649 0.029145021 0.333684084 0.114285008 0.02755015 0.003487221 3.68E-10 9.434695018 -0.158284303 KQITTS(ph)PITVR ddPTM_HeLa_CUDC101_4h_R1 1 KQITTSPITVR 11 1 O95835;O95835-2 O95835 LATS1 Serine/threonine-protein kinase LATS1 1 0 KQIT(0.002)T(0.004)S(0.935)PIT(0.058)VR 63.16 0.040325 44865000 1368 1627.1 955.77 1127 1658.3 1472.4 1363.6 1320.2 1675.4 1799.9 TRUE FALSE FALSE 1207.645114 1677.229022 1007.441817 1172.963931 1535.970513 1444.316423 1416.194509 1470.486232 1606.339303 1789.194115 0.674965955 0.937421495 0.56307016 0.655582266 0.858470582 0.807244117 0.791526474 0.821870707 0.897800462 1 10.8050942 -9.434415938 1.078759407 1.00468743 0.756603551 0.30877014 0.106824827 0.404617132 0.816084436 0.078348766 0.018161938 3.68E-10 9.434415938 -0.248083879 KRESESES(ph)DET(ph)PPAAPQLIK ddPTM_HeLa_CUDC101_4h_R1 1 KRESESESDETPPAAPQLIK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 KRES(0.3)ES(0.356)ES(0.42)DET(0.924)PPAAPQLIK 58.577 0.035225 238640000 4677.8 4533.6 4508.5 4408.9 4406.6 4690.9 4728.7 3923.9 5059.6 5592.8 TRUE FALSE FALSE 4129.475375 4673.274842 4752.243147 4588.713999 4081.533897 4601.428898 4911.087543 4370.580915 4851.041146 5559.533777 0.742773682 0.840587544 0.854791667 0.825377484 0.734150391 0.827664528 0.883363199 0.786141625 0.872562582 1 12.44074819 -9.434024955 1.106524933 1.002436002 0.808492472 0.352261959 0.058357867 0.233397828 0.5007911 0.035661946 0.008487927 3.68E-10 9.434024955 -0.19394353 AASYT(ph)EEDENHTAK ddPTM_HeLa_CUDC101_4h_R1 1 AASYTEEDENHTAK 14 0 Q14126 Q14126 DSG2 Desmoglein-2 1 0 AAS(0.079)YT(0.921)EEDENHTAK 243.92 4.74E-55 5568100 2185 1849.6 1478.7 1834.8 1613.2 1597.3 1443.9 1617.4 1298.2 1142.6 TRUE FALSE FALSE 1928.877612 1906.583984 1558.642995 1909.631075 1494.19745 1566.834164 1499.591707 1801.518278 1244.687647 1135.803764 1.698249005 1.678620941 1.372281941 1.681303703 1.315541907 1.379493723 1.320291193 1.586117545 1.095865048 1 10.14949788 -9.433952344 1.166382692 1.000216488 1.513130864 0.604248418 0.146982554 0.262714922 0.639705502 0.10812715 0.027138498 3.68E-10 9.433952344 0.512914376 FPPEDFRHS(ph)PEDFR ddPTM_HeLa_CUDC101_4h_R1 4 FPPEDFRHSPEDFR 14 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR;FPPEDFRHS(1)PEDFR ;;; 82.529 0.010422 67141300 4103.13 4122.96 3782.17 3453.82 4045.41 4319.61 4013.25 3911.53 4466.91 4980.51 TRUE FALSE FALSE 3622.167321 4249.983511 3986.645551 3594.681708 3746.988164 4237.220636 4168.042397 4356.802764 4282.782079 4950.885705 0.731620065 0.858428928 0.805238858 0.726068409 0.756831886 0.855851031 0.84187813 0.880004715 0.865053717 1 12.27347093 -9.433910136 1.107254151 1.002494027 0.800243774 0.295579568 0.065362845 0.260832066 0.560575272 0.041568451 0.009902074 3.68E-10 9.433910136 -0.202250253 CGSPS(ph)DSSTTEEMEVAVSK ddPTM_HeLa_CUDC101_4h_R1 2 CGSPSDSSTTEEMEVAVSK 19 0 P31751;P31751-2;M0R0P9;C9JHS6;J3QLS6;M0QZK3;J3QKW1;M0R275 P31751 AKT2 RAC-beta serine/threonine-protein kinase 1 0 CGS(0.024)PS(0.966)DS(0.008)S(0.002)T(0.001)TEEMEVAVSK;CGS(0.326)PS(0.614)DS(0.029)S(0.029)T(0.002)TEEMEVAVSK ; 149.86 4.08E-05 15310800 6651.9 5694.6 5123.1 5200 6383.8 5621.5 4854.5 4572.9 5711.4 4682.2 TRUE FALSE FALSE 5872.174366 5870.043876 5400.070283 5412.078476 5912.879792 5514.279254 5041.739691 5093.460452 5475.973675 4654.350066 1.261652923 1.261195181 1.160220053 1.162800047 1.270398597 1.184758167 1.083231734 1.094344082 1.176528107 1 12.18436401 -9.433616897 1.170520535 1.000262737 1.192162996 0.029353539 0.081930363 0.309159842 0.759265301 0.047654152 0.012008866 3.68E-10 9.433616897 0.191900259 LEQLCEEFS(ph)EEER ddPTM_HeLa_CUDC101_4h_R1 2 LEQLCEEFSEEER 13 0 Q9H3C7-3;Q9H3C7 Q9H3C7-3 GGNBP2 Gametogenetin-binding protein 2 1 0 LEQLCEEFS(1)EEER;LEQLCEEFS(1)EEER ; 153.41 0.00019701 23743000 4312 3064.6 3349.2 2793.9 3009.2 3248.5 3234 2614.5 3610.6 1681.04 TRUE FALSE FALSE 3806.553897 3159.016694 3530.267883 2907.847318 2787.217311 3186.540275 3358.736463 2912.124112 3461.76954 1671.041099 2.277953485 1.890448233 2.112615832 1.740141113 1.667952579 1.906919151 2.0099664 1.742700472 2.071624415 1 10.7065315 -9.433401075 1.136323614 0.994473242 1.945411485 0 0.369427632 0.1895326 0.433676172 0.143304166 0.0350683 3.69E-10 9.433401075 0.950938243 MESSFGS(ph)PSKQESSESLPK ddPTM_HeLa_CUDC101_4h_R1 1 MESSFGSPSKQESSESLPK 19 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 MES(0.002)S(0.007)FGS(0.922)PS(0.041)KQES(0.014)S(0.014)ES(0.001)LPK 72.916 0.0065739 105570000 1294 1526 993.41 1415.8 1454 1066.1 1175 1068.2 1116.1 1671.8 TRUE FALSE FALSE 1142.319282 1573.014251 1047.11675 1473.542444 1346.741317 1045.765919 1220.320144 1189.79957 1070.093886 1661.856059 0.687375585 0.946540612 0.630088715 0.886684762 0.810383853 0.629275871 0.734311577 0.715946224 0.643914904 1 10.69857971 -9.433292745 0.889964055 1.018275445 0.751797729 0 0.147228775 0.47892006 0.599307978 0.091470672 0.017470955 3.69E-10 9.433292745 -0.266477716 RGSLGEEGS(ph)EPPPPPPLPLAR ddPTM_HeLa_CUDC101_4h_R1 2 RGSLGEEGSEPPPPPPLPLAR 21 1 Q14934-18;Q14934-17;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-9;Q14934-10;Q14934-11;Q14934-12;Q14934-13;Q14934-14;Q14934-15;Q14934-16;Q14934-2 Q14934-18 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 RGS(0.337)LGEEGS(0.663)EPPPPPPLPLAR;RGS(0.035)LGEEGS(0.965)EPPPPPPLPLAR ; 136.2 3.05E-07 84674000 1461.89 1168.14 1575.78 1126.76 1393.92 1376.15 1462.65 1404.99 1451.24 1600.7 TRUE FALSE FALSE 1290.52947 1204.129009 1660.971433 1172.714143 1291.093299 1349.902232 1519.0649 1564.928382 1391.419273 1591.178965 0.81105237 0.756752719 1.043862111 0.737009581 0.811406716 0.848366061 0.954678847 0.983502432 0.874458061 1 10.63588039 -9.43321623 1.179867323 0.999537693 0.86142877 0.009180157 0.101326757 0.56945567 1.425407366 0.063324131 0.016093968 3.69E-10 9.43321623 -0.138108923 AVSEVAR ddPTM_HeLa_CUDC101_4h_R1 1 AVSEVAR 7 0 A0A087WTE6;A0A087WVV7;A0A590UJ70;A0A087X165;Q9C0H9-2;Q9C0H9 A0A087WTE6 SRCIN1 SRC kinase signaling inhibitor 1 0 0 106.84 0.032254 21048000 3351.6 2550 1250.1 2223.7 2007.1 2512.7 1850.5 1170.8 1144.9 1032 FALSE FALSE TRUE 2958.730529 2628.562478 1317.684187 2314.392098 1859.040232 2464.774434 1921.874405 1304.079139 1097.706737 1025.861618 2.884141951 2.562297323 1.284465823 2.25604707 1.812174468 2.402638319 1.873424613 1.271203753 1.070033929 1 10.00262042 -9.60710553 1.433192453 1.004655475 2.160486457 0.3752659 0.50201757 0.350376176 1.300052359 0.382297932 0.089655779 2.47E-10 9.60710553 1.155830981 KPISDNSFS(ph)S(ph)DEEQSTGPIK ddPTM_HeLa_CUDC101_4h_R1 1 KPISDNSFSSDEEQSTGPIK 20 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 2 0 KPIS(0.006)DNS(0.028)FS(0.911)S(0.91)DEEQS(0.115)T(0.03)GPIK 49.773 0.033252 8674000 2426.7 2435.9 2423.9 1965.7 2365.7 2509.5 2437.9 1965.4 2403.5 2883.8 TRUE FALSE FALSE 2142.245905 2510.947192 2554.943366 2045.869742 2191.187024 2461.635469 2531.93062 2189.133192 2304.426713 2866.647029 0.747300202 0.875917811 0.891265419 0.71368038 0.764372803 0.85871593 0.883237662 0.763656345 0.80387529 1 11.48514856 -9.432471557 1.066653358 1.004150866 0.809859092 0 0.084620777 0.321887362 0.632143802 0.048559814 0.011161292 3.69E-10 9.432471557 -0.194291774 RQTEPVSPVLK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 RQTEPVSPVLKR 12 2 Q8IYH5-2;Q8IYH5;Q8IYH5-4 Q8IYH5-2 ZZZ3 ZZ-type zinc finger-containing protein 3 0 1 RQTEPVSPVLK(1)R 152 0.0001392 3715800 333.45 432.63 694.1 1019.2 1368.8 1176.9 1194.3 1266.6 130.88 264.07 FALSE TRUE FALSE 294.3634965 445.9588175 731.6251455 1060.767381 1267.826351 1154.452593 1240.364551 1410.784624 125.485071 262.4992999 1.121387739 1.698895264 2.787150845 4.041029373 4.829827552 4.397926371 4.725210892 5.37443195 0.478039641 1 8.036169765 -6.458845661 1.208950564 1.032087921 4.871146546 0.973565318 0.284446899 0.035840002 0.104244957 0.038305216 0.067889537 3.48E-07 6.458845661 3.839058624 up SGFGK(ac)FER ddPTM_HeLa_CUDC101_4h_R1 2 SGFGKFER 8 1 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;F6S8Q4;A0A2R8Y645;O00571;O00571-2;A0A2U3TZJ9;A0A0D9SFB3;A0A0D9SF53;A0A0D9SG12;A0A2R8YF78;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0 A0A2R8Y5G6 DDX3X ATP-dependent RNA helicase DDX3X 0 1 ; SGFGK(1)FER;SGFGK(1)FER 90.906 0.027599 16286800 1664.57 2172.86 2685.2 3629.1 5257.8 3916.5 3750.4 5168.1 1996.2 1738.91 FALSE TRUE FALSE 1469.451628 2239.803241 2830.370034 3777.110384 4869.942569 3841.799288 3895.054184 5756.415614 1913.915791 1728.566886 0.850098217 1.295757346 1.637408455 2.185110923 2.817329551 2.222534354 2.253343053 3.330166545 1.107226921 1 10.75536071 -6.433916316 1.275183872 0.926662606 2.623283602 0.84734984 0.306717437 0.103592291 0.334442033 0.05004959 0.088692857 3.68E-07 6.433916316 1.696620996 up AVSMDNGAK(ac)FLR ddPTM_HeLa_CUDC101_4h_R1 2 AVSMDNGAKFLR 12 1 A8MYZ6 A8MYZ6 FOXO6 Forkhead box protein O6 0 1 ; AVSMDNGAK(1)FLR;AVSMDNGAK(1)FLR 115.33 0.0033895 1051160 497.5 475.84 478.14 384.05 671.1 57.223 526.49 504.21 276.38 0 FALSE TRUE FALSE 439.1838042 490.5000664 503.9896947 399.713219 621.59429 56.13156662 546.7968957 561.6072283 264.9874994 0 0 GPAPAPQQCS(ph)EPETK ddPTM_HeLa_CUDC101_4h_R1 2 GPAPAPQQCSEPETK 15 0 Q3YEC7-2;Q3YEC7;G3V154 Q3YEC7-2 RABL6 Rab-like protein 6 1 0 GPAPAPQQCS(0.97)EPET(0.03)K;GPAPAPQQCS(0.979)EPET(0.021)K ; 138.81 0.0004717 39626000 10150.2 7764 8278.1 8515.5 8747 8276.2 8104.6 8722 8381.6 7535.1 TRUE FALSE FALSE 8960.408943 8003.199637 8725.639126 8862.798897 8101.751236 8118.345274 8417.197137 9714.877224 8036.1069 7490.28089 1.196271418 1.068477906 1.164928159 1.183239858 1.081635169 1.083850578 1.123749197 1.296997718 1.072871234 1 12.87080411 -9.432276041 1.052536811 0.996252477 1.148215316 0.288669274 0.06784713 0.424842893 0.807655558 0.049863073 0.011309659 3.70E-10 9.432276041 0.151962839 EELQANGS(ph)APAADKEEPAAAGSGAASPSAAEK ddPTM_HeLa_CUDC101_4h_R1 1 EELQANGSAPAADKEEPAAAGSGAASPSAAEK 32 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 EELQANGS(0.97)APAADKEEPAAAGS(0.024)GAAS(0.005)PS(0.001)AAEK 61.958 0.0001532 0 700.5 727.5 672.55 494.7 557.66 678.8 717.1 648.21 760.98 794.89 TRUE FALSE FALSE 618.3884519 749.9134127 708.9100874 514.8760043 516.5225328 665.853021 744.7587872 721.9996062 729.6120823 790.1619589 0.782609748 0.949062916 0.897170611 0.651608191 0.653691977 0.842679167 0.942539411 0.913736226 0.923370297 1 9.626004582 -9.432265701 0.826991412 1.0169642 0.823155929 0.18984586 0.10447195 0.893548249 0.929832844 0.119466606 0.021266799 3.70E-10 9.432265701 -0.193808271 GSS(ph)PT(ph)PPCSPVQPSK ddPTM_HeLa_CUDC101_4h_R1 1 GSSPTPPCSPVQPSK 15 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 2 0 GS(0.008)S(0.99)PT(0.724)PPCS(0.278)PVQPSK 173.33 1.95E-06 8926000 4752.9 4275.1 4001.4 4462.4 4334.4 4677.3 4190.2 4880 4530.4 5142.6 TRUE FALSE FALSE 4195.772267 4406.810764 4217.727788 4644.39596 4014.659947 4588.088295 4351.817418 5435.519474 4343.654994 5112.011586 0.820767363 0.86205023 0.825062251 0.908526102 0.785338585 0.897511326 0.851292558 1.063283872 0.849695843 1 12.31967539 -9.431785996 1.152871571 1.000244372 0.867746154 0 0.085242257 0.449808995 1.06615216 0.047585347 0.011843538 3.70E-10 9.431785996 -0.132498218 TWDDDS(ph)DPESETDPDAQAK ddPTM_HeLa_CUDC101_4h_R1 1 TWDDDSDPESETDPDAQAK 19 0 K7EL01;Q5XUX1;Q5XUX1-2 K7EL01 FBXW9 F-box/WD repeat-containing protein 9 1 0 T(0.009)WDDDS(0.991)DPESETDPDAQAK 203.23 1.22E-17 32078000 6330.4 5877.8 5602.9 5016.6 6159.2 6277 5210.8 5221.7 6205 6262.8 TRUE FALSE FALSE 5588.360108 6058.888051 5905.809722 5221.198632 5704.848087 6157.276683 5411.782301 5816.117221 5949.227274 6225.548587 0.897649425 0.973229582 0.948640853 0.838672859 0.916360704 0.989033592 0.869286012 0.934233689 0.955614945 1 12.60398526 -9.431678715 0.899595474 1.005656757 0.918973482 0.178537791 0.044846331 0.650592484 0.837229637 0.040612802 0.007860786 3.70E-10 9.431678715 -0.086683275 RQSVS(ph)PPY(ph)KEPSAYQSSTR ddPTM_HeLa_CUDC101_4h_R1 1 RQSVSPPYKEPSAYQSSTR 19 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 RQS(0.388)VS(0.608)PPY(0.837)KEPS(0.054)AY(0.094)QS(0.009)S(0.007)T(0.002)R 63.894 0.012933 51121000 3648.9 2688.1 3115.3 3208.4 3133.1 3025.8 3017.6 2522.2 3328.3 3686.6 TRUE FALSE FALSE 3221.181473 2770.917175 3283.722541 3339.25242 2901.977455 2968.087906 3133.989843 2809.317053 3191.106065 3664.671939 0.878982219 0.756116024 0.896048158 0.911200914 0.791879192 0.809919129 0.85518974 0.766594418 0.87077537 1 11.83946834 -9.431573798 0.25951714 1.106501224 0.801508085 0.184847669 0.064023365 2.661131115 0.230408683 0.258975548 0.041055571 3.70E-10 9.431573798 -0.304993139 YVES(ph)DDEKPLDDETVNEDASNENSENDITMQSLPK ddPTM_HeLa_CUDC101_4h_R1 1 YVESDDEKPLDDETVNEDASNENSENDITMQSLPK 35 1 P46100-4;P46100;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNL6;A0A096LNN3;A0A096LNL7;A0A087WWG0 P46100-4 ATRX Transcriptional regulator ATRX 1 0 Y(0.151)VES(0.775)DDEKPLDDET(0.045)VNEDAS(0.015)NENS(0.014)ENDIT(0.001)MQSLPK 49.438 0.0072889 19341000 4947.3 4780.2 4657.7 4152.4 5288.3 4825.4 4075.6 4008.5 4866.5 5369.2 TRUE FALSE FALSE 4367.384994 4927.472296 4909.509351 4321.75282 4898.192645 4733.363535 4232.797257 4464.811437 4665.90081 5337.26376 0.81828165 0.923220683 0.919855112 0.809731918 0.917734792 0.886852093 0.793065033 0.836535655 0.874212147 1 12.38188459 -9.43152814 1.015380958 1.00484272 0.861278553 0.055281634 0.059530332 0.354904487 0.617827431 0.03876817 0.008486209 3.70E-10 9.43152814 -0.143564167 ES(ph)TGNMVTGQTVCK ddPTM_HeLa_CUDC101_4h_R1 1 ESTGNMVTGQTVCK 14 0 Q15021;E7EN77 Q15021 NCAPD2 Condensin complex subunit 1 1 0 ES(0.867)T(0.133)GNMVTGQTVCK 197.75 1.72E-16 19143000 2926.9 2186.2 2367.5 2449.9 2748.8 2602.3 1971 775.87 2161.5 1498.9 TRUE FALSE FALSE 2583.813219 2253.554231 2495.494211 2549.817511 2546.0265 2552.665463 2047.02213 864.1919046 2072.402055 1489.984476 1.734120899 1.512468262 1.674845779 1.71130475 1.708760421 1.713216147 1.37385467 0.58000061 1.390888354 1 10.54108158 -9.431102324 1.144875335 0.998167268 1.542827029 0.059250769 0.350702071 0.538931873 1.256653029 0.233731465 0.057828987 3.71E-10 9.431102324 0.544659761 AVTELNEPLSNEDR ddPTM_HeLa_CUDC101_4h_R1 2 AVTELNEPLSNEDR 14 0 Q04917 Q04917 YWHAH 14-3-3 protein eta 0 0 ; ; 229.56 8.49E-33 26528000 4187.3 4142.1 4091.4 3273.7 3930.2 3382.6 3448.8 3444.5 4444.4 3626.9 FALSE FALSE TRUE 3696.471042 4269.713191 4312.59346 3407.215636 3640.276976 3318.082541 3581.821371 3836.607957 4261.199951 3605.327037 1.025280371 1.184279026 1.196172612 0.945050366 1.009693972 0.920327756 0.993480296 1.064149775 1.181917731 1 11.81591442 -3.577931643 5.394448435 1.024384731 8.595519578 0 0.099391047 19086.95228 1968.329256 0.012403747 1771148.022 0.000264282 3.577931643 7.571134847 AVTEQGAELSNEER ddPTM_HeLa_CUDC101_4h_R1 2 AVTEQGAELSNEER 14 0 P27348;E9PG15 P27348 YWHAQ 14-3-3 protein theta 0 0 ; ; 274.59 2.68E-85 83748000 1888.81 1621.25 1531.29 1555.79 1481.76 1685.2 1660.25 1626.22 1743.03 1705.42 FALSE FALSE TRUE 1667.406555 1671.198791 1614.076169 1619.241841 1372.453517 1653.057618 1724.286399 1811.342311 1671.181566 1695.276086 0.983560477 0.985797419 0.952102246 0.955149344 0.809575224 0.975096405 1.017112441 1.068464498 0.985787259 1 10.72730453 -6.858895293 4.61702427 0.991880066 0.958640031 0.03735789 0.061815066 0.545138673 20.25093045 0.010469045 0.013943303 1.38E-07 6.858895293 -0.033240035 AVTEQGHELSNEER ddPTM_HeLa_CUDC101_4h_R1 2 AVTEQGHELSNEER 14 0 P31946-2;P31946;Q4VY20;A0A0J9YWZ2;Q4VY19;A0A0J9YWE8 P31946-2 YWHAB "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed" 0 0 ; ; 230.69 1.26E-34 119483000 7738.5 5766.2 5594.2 6292.4 6816.5 6667.3 6510.9 6573.8 6849.8 6810.1 FALSE FALSE TRUE 6831.404761 5943.849787 5896.639374 6549.03127 6313.660375 6540.132361 6762.027594 7322.13482 6567.448345 6769.593222 1.009130761 0.878021706 0.871047813 0.967418729 0.93264989 0.966104188 0.99888241 1.081621093 0.970139287 1 12.72485343 -3.059863976 13.45250562 0.982276816 0.969316095 0 0.061248481 0 0 0.008698004 0 0.000871236 3.059863976 -0.012960721 YEPQS(ph)PGYEPR ddPTM_HeLa_CUDC101_4h_R1 2 YEPQSPGYEPR 11 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 YEPQS(1)PGYEPR;YEPQS(1)PGYEPR ; 198.29 2.71E-16 236370000 3692.8 3555.6 3317 3698 3597.5 3226.2 2973.8 3281.1 3593.4 3980.7 TRUE FALSE FALSE 3259.935582 3665.143822 3496.327053 3848.820424 3332.119592 3164.66561 3088.500462 3654.607161 3445.278531 3957.022619 0.823835468 0.926237774 0.8835752 0.972655654 0.842077469 0.799759292 0.780511197 0.923574999 0.87067446 1 11.9501996 -9.431024086 0.995264094 1.005464337 0.864666911 0 0.069464035 0.473850499 0.785236993 0.050323972 0.010801409 3.71E-10 9.431024086 -0.140797426 AVTGYK(ac)DPYSGK ddPTM_HeLa_CUDC101_4h_R1 1 AVTGYKDPYSGK 12 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 1 AVTGYK(1)DPYSGK 107.09 0.023337 0 164.25 0 47.092 0 391.27 117.81 169.22 252.13 0 124.97 FALSE TRUE FALSE 144.996864 0 49.63793597 0 362.4067916 115.5629705 175.7468721 280.8314601 0 124.2266729 1.167195906 0 0.399575508 0 2.917302566 0.93025892 1.414727353 2.260637378 0 1 6.95683116 -5.772071639 24.99997842 0.86682985 1.779554804 0.438176121 0.70432805 198.0524004 465687.5644 0.098957206 0.180717593 1.69E-06 5.772071639 0.912724954 LSYLPATVEPASPT(ph)PAHSLPR ddPTM_HeLa_CUDC101_4h_R1 1 LSYLPATVEPASPTPAHSLPR 21 0 E9PCV4;M0R344;Q9NRA0-4;Q9NRA0-2;Q9NRA0;Q9NRA0-5 E9PCV4 SPHK2 Sphingosine kinase 2 1 0 LSYLPATVEPAS(0.177)PT(0.822)PAHSLPR 179.87 1.09E-09 11090000 2277.7 2095.6 2079.7 1794.5 2101.7 1897.9 2092.6 2051.9 1799.2 2295.5 TRUE FALSE FALSE 2010.711459 2160.162952 2192.134873 1867.687466 1946.661778 1861.70072 2173.312283 2285.480002 1725.036214 2281.846264 0.881177444 0.946673308 0.960684735 0.818498378 0.853108208 0.815874737 0.952435893 1.001592455 0.755982663 1 11.15598588 -9.430950812 0.730200934 1.013857037 0.898655687 0 0.096876832 1.067270077 0.812680196 0.079057974 0.012572197 3.71E-10 9.430950812 -0.11520135 AAEEAFVNDIDESS(ph)PGTEWER ddPTM_HeLa_CUDC101_4h_R1 2 AAEEAFVNDIDESSPGTEWER 21 0 P09496-2;P09496-5 P09496-2 CLTA Clathrin light chain A 1 0 AAEEAFVNDIDES(0.012)S(0.982)PGT(0.006)EWER;AAEEAFVNDIDES(0.208)S(0.788)PGT(0.003)EWER ; 211.14 2.45E-26 11658000 3968.9 3869.5 3492.7 3125.7 4259.4 3784.6 3314.4 3713.3 3527.4 4260.9 TRUE FALSE FALSE 3503.671558 3988.714709 3681.525927 3253.179556 3945.192548 3712.415061 3442.237518 4136.007062 3381.999079 4235.555977 0.82720464 0.941721637 0.869195437 0.768064352 0.931446207 0.876488253 0.812700278 0.976496848 0.798478192 1 12.04833564 -9.43070705 1.054840641 1.003168369 0.869473836 0 0.086212175 0.428211447 0.819016081 0.044223818 0.010077309 3.71E-10 9.43070705 -0.133694533 EAASSSSGTQPAPPAPAS(ph)PWDSKK ddPTM_HeLa_CUDC101_4h_R1 2 EAASSSSGTQPAPPAPASPWDSKK 24 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 EAASSSSGTQPAPPAPAS(0.99)PWDS(0.01)KK;EAASSSSGTQPAPPAPAS(0.978)PWDS(0.022)KK ; 154.46 4.45E-09 357110000 5706.9 5439.5 4956.1 4942.1 5734.1 5713.4 5195.9 4494.3 5631.9 6070 TRUE FALSE FALSE 5037.945833 5607.084548 5224.041757 5143.6602 5311.106867 5604.426414 5396.307604 5005.912945 5399.750698 6033.89537 0.834940867 0.929264464 0.865782623 0.852460953 0.880211959 0.928823931 0.894332313 0.829632043 0.894902939 1 12.55887396 -9.430197292 1.074485327 1.002393827 0.875881682 0.144777565 0.045256125 0.259962201 0.520248008 0.025581962 0.005944565 3.71E-10 9.430197292 -0.126512145 AVTK(ac)AQK ddPTM_HeLa_CUDC101_4h_R1 2 AVTKAQK 7 1 O60814;P57053;P58876;P62807;Q16778;Q8N257;Q93079;U3KQK0;Q99877;Q99880;Q6DRA6;Q6DN03 O60814;P58876;P62807;Q16778;Q8N257;Q93079;U3KQK0;Q99880;Q6DRA6 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BL;HIST2H2BD;HIST2H2BC Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Putative histone H2B type 2-D;Putative histone H2B type 2-C 0 1 ; AVTK(1)AQK;AVTK(1)AQK 121.62 0.0026512 34918000 11937.5 5062.7 8226 24439 11110.8 15960 10081.1 4122.3 2491.3 1052.62 FALSE TRUE FALSE 10538.20435 5218.675786 8670.722442 25435.72805 10291.17842 15655.58959 10469.9314 4591.565969 2388.60756 1046.358969 10.07130885 4.98746218 8.286565792 24.30879727 9.835227413 14.96196817 10.00606074 4.388136484 2.282780221 1 10.03116216 -8.818869478 0.487775609 1.46E-12 11.864035 0.337953146 5.271629185 1.103195494 0.456782147 6.105103695 1.592131062 1.52E-09 8.818869478 11.864035 AVTK(ac)AQK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AVTKAQKK 8 2 O60814;P57053;P58876;P62807;Q16778;Q8N257;Q93079;U3KQK0;Q99877;Q99880;Q6DRA6;Q6DN03 O60814;P58876;P62807;Q16778;Q8N257;Q93079;U3KQK0;Q99880;Q6DRA6 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BL;HIST2H2BD;HIST2H2BC Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Putative histone H2B type 2-D;Putative histone H2B type 2-C 0 2 ; AVTK(1)AQK(1)K;AVTK(1)AQK(1)K 138.4 0.0045248 308720000 33334.7 18402.3 7211.7 39636 25936.9 31909.6 25862.3 12865.8 2919.81 731.36 FALSE TRUE FALSE 29427.257 18969.25305 7601.586316 41252.5274 24023.58656 31300.97755 26859.81757 14330.39067 2799.454196 727.0098382 40.47710973 26.09215454 10.45596073 56.74273611 33.04437615 43.05440711 36.94560398 19.7114123 3.85064142 1 9.505831077 -9.309223363 0.879951611 4.75E-20 34.12884035 0.506156344 12.16940781 0.428898899 0.555976779 9.987136581 2.2700391 4.91E-10 9.309223363 34.12884035 AVTK(ac)VQK ddPTM_HeLa_CUDC101_4h_R1 2 AVTKVQK 7 1 Q5QNW6;Q5QNW6-2 Q5QNW6 HIST2H2BF Histone H2B type 2-F 0 1 ; AVTK(1)VQK;AVTK(1)VQK 133.6 0.0019961 243210000 13907.8 8933.6 15854.1 27167 15579.3 17905 17802.2 7329.1 4562.8 2609.6 FALSE TRUE FALSE 12277.54877 9208.833627 16711.2206 28274.98769 14430.04608 17563.49196 18488.83682 8163.415119 4374.719453 2594.077983 4.732914294 3.549944792 6.442065624 10.89982177 5.562687849 6.770610626 7.127324983 3.146942834 1.686425574 1 11.34100614 -8.200725481 0.545612639 1.098304445 6.671078106 0.495053495 1.976527577 0.486993142 0.326512529 1.174283586 0.613059745 6.30E-09 8.200725481 5.572773661 AVTK(ac)YTSAK ddPTM_HeLa_CUDC101_4h_R1 2 AVTKYTSAK 9 1 O60814;P57053 O60814 HIST1H2BK;H2BFS Histone H2B type 1-K;Histone H2B type F-S 0 1 ; AVTK(1)YTSAK;AVTK(1)YTSAK 122.96 0.00186 1593990 1490.17 1074.39 596.04 1323.45 1252.96 968.94 1279.93 762.61 779.84 449.43 FALSE TRUE FALSE 1315.494532 1107.490682 628.2637253 1377.426011 1160.531637 950.4590839 1329.297329 849.4224398 747.6946651 446.7567704 2.944543024 2.478956685 1.406276898 3.083167627 2.597681141 2.127464309 2.975438576 1.901308489 1.673605673 1 8.803345783 -9.41244558 1.065631206 0.974865598 2.482701855 0.384799811 0.532525729 0.313135175 0.618940429 0.363161469 0.085971345 3.87E-10 9.41244558 1.507836257 AVTK(ac)YTSSK ddPTM_HeLa_CUDC101_4h_R1 1 AVTKYTSSK 9 1 P58876;P62807;Q16778;Q5QNW6;Q5QNW6-2;Q8N257;Q93079;U3KQK0;Q99877;Q99879;Q99880 P58876;P62807;Q16778;Q5QNW6;Q8N257;Q93079;U3KQK0;Q99879;Q99880 HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST2H2BF;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 2-F;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 0 1 AVTK(1)YTSSK 143.89 1.03E-10 0 4503.6 3310.5 2877.1 3830.3 3832.1 3875.8 3614.9 3090 2725.1 1379 FALSE TRUE FALSE 3975.694835 3412.492581 3032.644729 3986.51619 3549.413618 3801.875573 3754.327904 3441.75311 2612.770225 1370.797647 2.900278422 2.489421097 2.212321225 2.908172625 2.589305304 2.773476874 2.738790742 2.510766719 1.906021819 1 10.4207999 -9.324094743 0.799167822 0.875002033 2.659693942 0.625192096 0.338552452 0.176960201 0.179482783 0.207016099 0.041929508 4.74E-10 9.324094743 1.784691909 ITPS(ph)YVAFTPEGER ddPTM_HeLa_CUDC101_4h_R1 2 ITPSYVAFTPEGER 14 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 1 0 IT(0.001)PS(0.999)YVAFTPEGER;IT(0.002)PS(0.97)YVAFT(0.028)PEGER ; 203.11 5.74E-17 22704000 1813.61 1482.1 1469.61 1904.53 1895.89 1962.49 1451.12 1344.96 1316.78 1867.12 TRUE FALSE FALSE 1601.021385 1527.761744 1549.061562 1982.204965 1756.033972 1925.058773 1507.090184 1498.06481 1262.501771 1856.014287 0.86261264 0.823141155 0.834617262 1.067990144 0.94613171 1.037200406 0.812003547 0.807140775 0.680222011 1 10.8579921 -9.430045322 1.204191615 0.999098034 0.899516432 0 0.13265559 0.752014199 1.97760821 0.060591396 0.015786628 3.71E-10 9.430045322 -0.099581602 GEAAAQADKPNSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GEAAAQADKPNSKR 14 2 A0A0C4DFW2;Q9UK53-3;Q9UK53-4;Q9UK53-5;Q9UK53-2;Q9UK53 A0A0C4DFW2 ING1 Inhibitor of growth protein;Inhibitor of growth protein 1 0 1 ; GEAAAQADKPNSK(1)R;GEAAAQADKPNSK(1)R 128.95 0.0049749 2675300 475.29 590 1092.24 1600.04 1927.49 1894.86 2061.09 1908.18 334.28 283.42 FALSE TRUE FALSE 419.5772267 608.1772007 1151.289798 1665.296547 1785.302903 1858.718703 2140.586932 2125.399498 320.5008369 281.7342052 1.489266191 2.158691381 4.086439548 5.910878112 6.336834043 6.597419369 7.59789508 7.543988123 1.137600018 1 8.138190921 -6.42806402 0.96149873 1.133610999 7.329583519 0.988506042 0.277027803 0.03756408 0.06914941 0.056548983 0.109357042 3.73E-07 6.42806402 6.19597252 up S(ph)RSLGPGAGPR ddPTM_HeLa_CUDC101_4h_R1 1 SRSLGPGAGPR 11 1 H3BUV2;P78549-3;P78549-2;P78549 H3BUV2 NTHL1 Endonuclease III-like protein 1 1 0 S(0.991)RS(0.009)LGPGAGPR 68.171 0.036053 36269000 1909.2 1935.4 2365.8 2306.3 2066.4 2251.6 1817.7 1367.2 2233 2983 TRUE FALSE FALSE 1685.40647 1995.02738 2493.702304 2400.360883 1913.965789 2208.654481 1887.809298 1522.836522 2140.954795 2965.256983 0.568384622 0.672800837 0.840973419 0.809495061 0.645463715 0.744844205 0.636642729 0.513559712 0.722013238 1 11.53394143 -9.430033439 1.104289553 1.003956808 0.677575635 0.119923193 0.126487491 0.297104272 0.63544182 0.076194871 0.018208401 3.72E-10 9.430033439 -0.326381173 AVVGVVAGGGR ddPTM_HeLa_CUDC101_4h_R1 2 AVVGVVAGGGR 11 0 E9PKZ0;E9PKU4;P62917;E9PP36 E9PKZ0 RPL8 60S ribosomal protein L8 0 0 ; ; 143.85 0.0015422 3818900 3415.1 3307.2 2851.2 3515.9 3499.3 3502.8 3174.4 3147.5 2717.2 2293.1 FALSE FALSE TRUE 3014.787155 3409.090912 3005.344496 3659.293599 3241.163611 3435.989926 3296.837671 3505.798677 2605.195866 2279.460539 1.322588 1.495569172 1.318445503 1.605333164 1.421899416 1.507369778 1.446323643 1.537994897 1.142900182 1 11.15447672 -8.45047496 0.42446196 0.94844413 1.510963635 0.786913218 0.08246902 0.289571421 0.108536993 0.069933806 0.025883745 3.54E-09 8.45047496 0.562519505 AVVIVDDR ddPTM_HeLa_CUDC101_4h_R1 3 AVVIVDDR 8 0 P23246;P23246-2;Q15233;Q15233-2;H7C367;C9IZL7 P23246;Q15233 SFPQ;NONO "Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein" 0 0 ;; ;; 152.47 0.012731 113582000 19965.8 18703.7 18478.8 18391.1 19634.4 18655.5 18366.6 17571.7 19309 18587.2 FALSE FALSE TRUE 17625.43919 19279.93883 19477.81982 19141.16855 18186.00943 18299.67742 19075.00591 19571.9913 18513.07485 18476.64251 0.953930844 1.043476314 1.054186106 1.035965736 0.984270244 0.990422227 1.032384856 1.059282891 1.001971805 1 14.173415 -7.255915554 24.98450641 0.978245121 1.026815165 0.350867723 0.026377266 369.6399862 1671899.41 0.005006189 0.006039091 5.55E-08 7.255915554 0.048570045 ELTPAS(ph)PTCTNSVSK ddPTM_HeLa_CUDC101_4h_R1 4 ELTPASPTCTNSVSK 15 0 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 ELT(0.063)PAS(0.933)PT(0.004)CTNSVSK;ELT(0.002)PAS(0.996)PT(0.002)CTNSVSK;ELTPAS(0.97)PT(0.03)CTNSVSK;ELT(0.007)PAS(0.981)PT(0.012)CTNSVSK ;;; 250.19 6.96E-56 330118000 16172.6 13766.6 12227.3 12334.8 13912.6 13590.5 12294.2 10735.1 14080.4 10405.4 TRUE FALSE FALSE 14276.87234 14190.73263 12888.34482 12837.86646 12886.29522 13331.28386 12768.39141 11957.14039 13499.99995 10343.50822 1.380273699 1.371945797 1.246032251 1.241152053 1.245834097 1.288855152 1.234435275 1.15600434 1.305166455 1 13.33643797 -9.429830037 1.162330193 1.00016389 1.280467096 0 0.111839525 0.223200876 0.539851304 0.050041114 0.012593533 3.72E-10 9.429830037 0.280303206 PERKMK(ac)LEDFIK ddPTM_HeLa_CUDC101_4h_R1 1 PERKMKLEDFIK 12 3 A0A2R8Y7T6;A0A3B3IRZ4;Q6DN90;Q6DN90-3;A0A2R8Y695;A0A3B3IU98;A0A0C4DGT3;Q6DN90-2 A0A2R8Y7T6 IQSEC1 IQ motif and SEC7 domain-containing protein 1 0 1 PERKMK(1)LEDFIK 87.806 0.03754 2751100 347.6 823.67 1868.4 3444.2 4006.1 3872.5 4683.2 3739.7 98.983 209.92 FALSE TRUE FALSE 306.8548549 849.0462964 1969.411356 3584.669363 3710.577984 3798.638515 4863.832593 4165.412332 94.90287884 208.6713865 1.470517161 4.068819931 9.437860114 17.1785381 17.7819204 18.20392617 23.30857466 19.96158842 0.454795842 1 7.705088978 -6.425829481 1.166682201 1.068815689 20.55844881 0.977201366 1.280809333 0.041562049 0.112422986 0.219250942 0.399451781 3.75E-07 6.425829481 19.48963312 up VVNGAAASQPPSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 VVNGAAASQPPSKR 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 1 VVNGAAASQPPSK(1)R 253.42 2.89E-45 2893100 463.08 352.56 787.93 1169.4 1435.7 1145.6 1396.2 1388.8 306.73 438.18 FALSE TRUE FALSE 408.7984644 363.4219557 830.5278792 1217.093187 1329.791271 1123.749589 1450.051902 1546.895378 294.0864596 435.5736859 0.938528836 0.834352413 1.906744843 2.79423029 3.052965123 2.57992993 3.32906222 3.551397682 0.6751704 1 8.76677299 -6.416213142 1.934985613 0.954254213 3.102371912 0.939578175 0.263078822 0.053414956 0.393674668 0.040665273 0.067035803 3.84E-07 6.416213142 2.148117699 up AVVSK(ac)ATTKPPPAKK ddPTM_HeLa_CUDC101_4h_R1 1 AVVSKATTKPPPAKK 15 3 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 AVVSK(0.818)ATTK(0.182)PPPAKK 55.841 0.030315 1888200 1273.8 1203.6 1430.1 1436.3 1504.5 1039 972.63 943.31 698.09 379.61 FALSE TRUE FALSE 1124.487095 1240.681489 1507.415532 1494.878522 1393.516032 1019.182806 1010.144665 1050.692597 669.3144347 377.3520628 2.97994156 3.287861951 3.994719203 3.961495562 3.692880388 2.700880442 2.676928959 2.784382811 1.773713465 1 8.559767351 -8.79357596 0.711694529 1.004339398 3.307064625 0.673715048 0.513768467 0.282924464 0.272931575 0.348386424 0.121256268 1.61E-09 8.79357596 2.302725226 TGSS(ph)PNSVSSSPTNSAITQLR ddPTM_HeLa_CUDC101_4h_R1 1 TGSSPNSVSSSPTNSAITQLR 21 0 U3KQ51;E7ESP8;A0A1X7SC99;E7EUW9;A0A1B0GWI0;A0A1B0GVV8;A0A1B0GW50;A0JP08;A0A1B0GV02;O60315-2;O60315 U3KQ51 ZEB2 Zinc finger E-box-binding homeobox 2 1 0 T(0.011)GS(0.085)S(0.904)PNSVSSSPTNSAITQLR 137.61 2.30E-07 0 903.75 885.71 675.87 643.54 647.5 701.79 852.17 614.32 573.94 620.24 TRUE FALSE FALSE 797.813795 912.9976753 712.4095766 669.7863428 599.735215 688.404525 885.0384824 684.2517056 550.2819503 616.5507849 1.293995263 1.48081504 1.155475906 1.086344157 0.972726383 1.116541479 1.435467287 1.109805911 0.892516827 1 9.268075923 -9.429519485 1.221142096 1.002647293 1.214441894 0.291993698 0.154812928 0.597192247 1.623146277 0.102751008 0.02716037 3.72E-10 9.429519485 0.2117946 KS(ph)PVGKSPPSTGSTYGSSQK ddPTM_HeLa_CUDC101_4h_R1 1 KSPVGKSPPSTGSTYGSSQK 20 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 KS(0.494)PVGKS(0.494)PPS(0.008)T(0.003)GS(0.001)TYGSSQK 56.708 0.013057 37045000 3707.3 3491.1 3532.7 3615.7 3558.3 3895.4 3438.5 3185.5 4090.6 4417.6 TRUE FALSE FALSE 3272.735914 3598.656653 3723.688448 3763.163874 3295.811298 3821.101735 3571.124097 3548.124444 3921.983737 4391.323919 0.745273174 0.819492417 0.847964877 0.856954291 0.750527941 0.870148002 0.813222655 0.807985134 0.893121029 1 12.10044024 -9.429325638 1.114604593 1.001839496 0.810114213 0.489880905 0.049904123 0.202265762 0.442552742 0.030563737 0.007380696 3.72E-10 9.429325638 -0.191725282 AVYDEQGTVDEDSPVLTQDR ddPTM_HeLa_CUDC101_4h_R1 1 AVYDEQGTVDEDSPVLTQDR 20 0 Q8WXX5 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 0 0 129.29 0.00010068 2495600 812.61 607.83 754.08 671.84 748.27 693.03 580.95 563.24 875.45 784.19 FALSE FALSE TRUE 717.3570876 626.5565218 794.8478458 699.2405391 693.0716129 679.8116074 603.3574361 627.3569649 839.3635805 779.525603 0.92024827 0.803766444 1.019655856 0.897007791 0.889094098 0.872083745 0.774005926 0.804793277 1.076762042 1 9.606452598 -1 0.132725238 1.027404461 0.230414207 0.570654212 0.062420313 44.34751408 0.394800652 0.177158772 6.664703438 0.1 1 -0.796990254 AVYDEQGTVDEDSPVLTQDRDWEAYWR ddPTM_HeLa_CUDC101_4h_R1 2 AVYDEQGTVDEDSPVLTQDRDWEAYWR 27 1 Q8WXX5 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 0 0 ; ; 135.76 3.08E-11 49744100 1057.88 941.97 1037.88 936.74 1294.21 714.66 1079.02 859.3 815.81 946.49 FALSE FALSE TRUE 933.87691 970.9909792 1093.990932 974.9443061 1198.738707 701.0290512 1120.638163 957.1192386 782.1819665 940.8602354 0.992577723 1.032024676 1.162756051 1.036226497 1.274087969 0.745093718 1.19107825 1.017280997 0.831347672 1 9.877836617 -6.997664016 24.92212643 0.997326935 1.071701565 0.107330779 0.142117398 151.4002748 1615227.664 0.019356085 0.025352578 1.01E-07 6.997664016 0.07437463 AWEDYYK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 AWEDYYKK 8 1 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 0 1 AWEDYYK(1)K 107.66 0.0063004 1069500 756.51 371.91 452.53 384.81 767.76 601.63 448.27 586.16 604.76 343.96 FALSE TRUE FALSE 667.8330446 383.3681063 476.9951406 400.5042151 711.1238744 590.1549101 465.5599241 652.8860851 579.8315368 341.9141106 1.953218729 1.121240962 1.39507299 1.17135913 2.0798319 1.726032626 1.361628285 1.90950319 1.695839741 1 8.417490153 -9.567137911 1.328113878 0.99823182 1.617070479 0 0.377965272 0.417719024 1.314530322 0.232583419 0.05395201 2.71E-10 9.567137911 0.618838659 KIPEPS(ph)PVTR ddPTM_HeLa_CUDC101_4h_R1 1 KIPEPSPVTR 10 1 H0YHT2;A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-3;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;H0YI78 H0YHT2 KIF21A Kinesin-like protein KIF21A 1 0 KIPEPS(0.977)PVT(0.023)R 68.033 0.036962 56712000 3005.7 2850.4 2830.7 2665.1 2893.2 2613.4 2679.2 3058.1 3129.6 3339.6 TRUE FALSE FALSE 2653.376402 2938.217445 2983.736204 2773.794298 2679.7744 2563.553749 2782.537641 3406.221743 3000.596563 3319.735911 0.799273338 0.885075658 0.898787218 0.835546674 0.807225175 0.77221617 0.83818042 1.026052022 0.903866044 1 11.69685276 -9.429317167 1.082811374 1.002576644 0.849253645 0.158476919 0.073227351 0.425440406 0.867885341 0.050866581 0.01192913 3.72E-10 9.429317167 -0.153322999 RRDS(ph)GDNSAPSGQER ddPTM_HeLa_CUDC101_4h_R1 1 RRDSGDNSAPSGQER 15 2 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 RRDS(0.999)GDNSAPSGQER 81.643 0.015243 6301600 698.33 307.82 769.34 862.2 402.74 546.93 500.49 384.74 619.78 1202.9 TRUE FALSE FALSE 616.472816 317.3035693 810.9328475 897.3642427 373.0306726 536.4982215 519.794067 428.5372464 594.2324061 1195.745097 0.515555378 0.265360544 0.678182038 0.750464497 0.311965045 0.448672734 0.434703072 0.358385117 0.496955754 1 10.22369416 -9.429088836 0.42049126 1.194343779 0.442846904 0 0.214459864 1.161415003 0.245407861 0.390671617 0.047742928 3.72E-10 9.429088836 -0.751496875 AWNDIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 AWNDIKK 7 1 P36578;H3BTP7;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 1 ; AWNDIK(1)K;AWNDIK(1)K 125.96 0.0024 4364700 4739.9 1801.99 1811.04 1553.91 3906.8 3566.8 4044 3407.3 3046.8 2133.3 FALSE TRUE FALSE 4184.296107 1857.507176 1908.9503 1617.285166 3618.603147 3498.769233 4199.978435 3795.173259 2921.209614 2120.611037 1.973155866 0.875930165 0.900188798 0.762650547 1.706396451 1.649887307 1.980551059 1.789660241 1.377532024 1 11.05026431 -1 0.032227075 1.14E-11 3.750334899 0.116866363 0.427030011 2389.56706 5.957881874 215.4081716 551.7453384 0.1 1 3.750334899 FCSNSGRLS(ph)GPAELR ddPTM_HeLa_CUDC101_4h_R1 1 FCSNSGRLSGPAELR 15 1 Q96PC5;G3V599;Q96PC5-14;Q96PC5-6;Q96PC5-11;Q96PC5-13;Q96PC5-5;Q96PC5-8;Q96PC5-10;Q96PC5-9;Q96PC5-12;Q96PC5-7 Q96PC5 MIA2 Melanoma inhibitory activity protein 2 1 0 FCSNSGRLS(1)GPAELR 118.71 0.0048237 15990000 1892.8 1632 1432.7 1501.3 1961.9 1571.1 1358.6 1300.7 1277.2 1369.9 TRUE FALSE FALSE 1670.928853 1682.279986 1510.156096 1562.529503 1817.174546 1541.133885 1411.001657 1448.76643 1224.553275 1361.751774 1.22704364 1.235379324 1.108980451 1.147440769 1.334438905 1.131728935 1.036166564 1.063899059 0.899248526 1 10.41124803 -9.429072821 1.165155682 1.000226538 1.167443309 0.43951746 0.090165018 0.453685358 1.103992886 0.060704735 0.01533144 3.72E-10 9.429072821 0.167216771 QDVDLCLVSS(ph)CEYK ddPTM_HeLa_CUDC101_4h_R1 1 QDVDLCLVSSCEYK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QDVDLCLVS(0.299)S(0.701)CEYK 214.82 4.22E-24 18395000 5505.6 4120 3690.6 3481.8 3803.5 3945.3 3410.1 2362.2 4374.3 1058 TRUE FALSE FALSE 4860.241914 4246.932317 3890.124999 3623.802854 3522.923383 3870.049976 3541.628699 2631.1033 4193.989503 1051.706969 4.621289064 4.038132714 3.698867759 3.44563929 3.349719538 3.67977972 3.367505212 2.501745617 3.987792823 1 10.03851708 -9.428969614 1.14640509 0.99314317 3.68110947 0 1.04206679 0.195894451 0.458620329 0.419030016 0.104146348 3.72E-10 9.428969614 2.6879663 AWVWNTHADFADECPKPELLAIR ddPTM_HeLa_CUDC101_4h_R1 1 AWVWNTHADFADECPKPELLAIR 23 1 C9JJ34;P43487-2;P43487;F6WQW2;C9JXG8;C9JGV6 C9JJ34 RANBP1 Ran-specific GTPase-activating protein 0 0 46.356 0.035738 22401000 1137.8 1170.1 1281.3 1305.8 1706.4 1333.4 1423.7 1159.9 1350.5 1692.1 FALSE FALSE TRUE 1004.428809 1206.149394 1350.570954 1359.056168 1580.522272 1307.967617 1478.612586 1291.938328 1294.831818 1682.035314 0.597150845 0.717077331 0.802938525 0.807983136 0.939648685 0.777610081 0.879061559 0.768080383 0.769800615 1 10.71599228 -9.648923917 1.50634872 0.999162065 0.7631082 0 0.112265676 0.330325797 1.355479514 0.076743979 0.017617229 2.24E-10 9.648923917 -0.236053866 AWYDNHR ddPTM_HeLa_CUDC101_4h_R1 1 AWYDNHR 7 0 Q5F1R6;Q5F1R6-3;Q5F1R6-2 Q5F1R6 DNAJC21 DnaJ homolog subfamily C member 21 0 0 113.7 0.012257 3626800 1724.8 1208.9 717.69 1180.5 1165.6 894.58 793.27 1114.1 941.28 429.93 FALSE FALSE TRUE 1522.621559 1246.144776 756.4904923 1228.645893 1079.61601 877.517377 823.8666896 1240.924641 902.48004 427.3727572 3.562748287 2.915826418 1.770095261 2.87488117 2.526169467 2.053283374 1.927747325 2.90361194 2.111692954 1 8.739351136 -6.250526397 23.96376997 2.275069539 2.409126496 0.015163164 0.693517983 4232.459305 9294021.731 0.155338975 0.255784594 5.62E-07 6.250526397 0.134056957 SSLSTSS(ph)PESAR ddPTM_HeLa_CUDC101_4h_R1 2 SSLSTSSPESAR 12 0 D6REJ6;D6R9F1;D6REQ4;D6RDH3;D6RBZ2;D6RF08;D6RF67;D6RF51;D6RB63;D6R9D1;D6RC23;D6RAM4;D6RGK2;D6R9N9;D6RC13;Q8N7B6-2;Q8N7B6-3;Q8N7B6-4;Q8N7B6 D6REJ6 PACRGL PACRG-like protein 1 0 SSLST(0.003)S(0.022)S(0.974)PESAR;SSLS(0.032)T(0.145)S(0.145)S(0.677)PESAR ; 196.02 3.91E-16 60094000 7684.1 7577.6 6944.9 6352.9 7675.9 7375.4 6334.5 6691.7 7502.9 8308.7 TRUE FALSE FALSE 6783.381446 7811.056874 7320.362301 6611.998722 7109.66415 7234.726533 6578.823787 7453.456079 7193.627286 8259.279483 0.821304263 0.945731028 0.886319723 0.800553939 0.860809247 0.875951292 0.796537252 0.902434177 0.870975162 1 13.01180021 -9.428918214 0.88209666 1.01070381 0.857351131 0.039187844 0.059055298 0.392770557 0.48181273 0.042914488 0.008180396 3.72E-10 9.428918214 -0.153352679 LDS(ph)LPEHEDSEK ddPTM_HeLa_CUDC101_4h_R1 1 LDSLPEHEDSEK 12 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 0 LDS(0.986)LPEHEDS(0.014)EK 115.12 0.0044673 9423700 2677.8 2060.7 2208.1 2149.4 1956.3 2030.1 2234.4 2482.9 2262 1858.3 TRUE FALSE FALSE 2363.912343 2124.187724 2327.476565 2237.061822 1811.987646 1991.379225 2320.581556 2765.5433 2168.759403 1847.246749 1.279694954 1.149920944 1.259970584 1.211024907 0.980912619 1.078025568 1.256237997 1.497116344 1.174049652 1 10.85116087 -9.428845387 1.097765334 0.997191128 1.209352779 0.065554925 0.138840629 0.590443473 1.245482149 0.098163916 0.023360293 3.73E-10 9.428845387 0.212161651 AYEEAQK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 AYEEAQKR 8 1 A2AB15;A0A140T947;O60231 A2AB15 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 0 1 ; AYEEAQK(1)R;AYEEAQK(1)R 125.31 0.0023054 4613400 1923.72 1430.69 1642.06 1370.54 1371.44 1246.63 1229.19 1438.62 1184.85 935.13 FALSE TRUE FALSE 1698.224458 1474.767863 1730.834731 1426.436545 1270.271603 1222.85261 1276.60027 1602.386686 1136.009981 929.5678052 1.82689681 1.586509187 1.861977922 1.534515866 1.366518501 1.315506629 1.373326683 1.723797529 1.222084043 1 9.860416293 -9.470329092 1.211069441 1.000309535 1.587305072 0.474287121 0.190212227 0.291642259 0.765855524 0.141709974 0.034947876 3.39E-10 9.470329092 0.586995537 AYFETEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 AYFETEKK 8 1 H3BR35;P15170;P15170-2;P15170-3;H3BSV8 H3BR35 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 0 1 AYFETEK(1)K 134.91 0.0028707 1921500 1628.5 624.69 653.71 481.06 1615.5 1389.4 1468 1221.4 1186.1 920.49 FALSE TRUE FALSE 1437.609699 643.9359585 689.05154 500.6797061 1496.327784 1362.89951 1524.621252 1360.439239 1137.208456 915.0148845 1.571132583 0.703743698 0.753049542 0.547182034 1.635304309 1.489483431 1.666225629 1.486794654 1.242830554 1 9.837651402 ISS(ph)PTETER ddPTM_HeLa_CUDC101_4h_R1 3 ISSPTETER 9 0 P31949 P31949 S100A11 "Protein S100-A11;Protein S100-A11, N-terminally processed" 1 0 IS(0.048)S(0.946)PT(0.005)ETER;IS(0.047)S(0.948)PT(0.005)ETER;IS(0.042)S(0.955)PT(0.003)ETER ;; 118.03 0.0062392 149894000 8777.9 6859.1 7534.9 7675.2 6996.2 7006.7 6549.7 6870.8 7306.9 6175.6 TRUE FALSE FALSE 7748.967868 7070.420741 7942.259486 7988.227831 6480.104264 6873.058871 6802.324123 7652.944099 7005.706489 6138.867257 1.262279757 1.151746804 1.293766285 1.301254368 1.055586315 1.119597246 1.108074803 1.246637821 1.141205078 1 12.58375676 -9.428774963 1.130916465 0.998863835 1.194813833 0.166463728 0.089650604 0.385021621 0.872572203 0.05975179 0.014653953 3.73E-10 9.428774963 0.195949997 AYGELPEHAK ddPTM_HeLa_CUDC101_4h_R1 1 AYGELPEHAK 10 0 X6RAC9;P47813;A6NJH9;O14602 X6RAC9 EIF1AX;EIF1AY "Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal" 0 0 107.45 0.0086358 8022000 5445.9 4652.6 5165.1 4892.2 5495.7 4948.3 4794.8 5181.6 5125.5 4486.2 FALSE FALSE TRUE 4807.539857 4795.941091 5444.34093 5091.725062 5090.29316 4853.919422 4979.737042 5771.452399 4914.224721 4459.515883 1.078040752 1.07543985 1.220836762 1.141766325 1.141445236 1.088440887 1.116654178 1.294188103 1.101963722 1 12.12267139 -1.000000042 0.020681474 2.73E-08 2.568290282 0.305972456 0.064839576 1327.322913 2.136729462 97.79576794 179.165232 0.09999999 1.000000042 2.568290254 KNSST(ph)DQGS(ph)DEEGSLQK ddPTM_HeLa_CUDC101_4h_R1 1 KNSSTDQGSDEEGSLQK 17 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 2 0 KNS(0.263)S(0.328)T(0.409)DQGS(1)DEEGSLQK 93.255 0.0059856 36817000 1939.8 1462.7 1361.8 1853.7 1870.6 1802.2 1580.6 1168.7 1382.6 1394.3 TRUE FALSE FALSE 1712.419585 1507.764053 1435.423027 1929.301898 1732.609565 1767.826038 1641.564271 1301.740084 1325.608643 1386.006642 1.235506045 1.087847639 1.035653787 1.391986041 1.250073061 1.27548165 1.184384131 0.939201909 0.956423009 1 10.43671846 -9.428748277 0.911691653 0.987918571 1.185976872 0.280040597 0.123573019 0.808294151 1.077386627 0.115915329 0.022842977 3.73E-10 9.428748277 0.198058301 TGDLGIPPNPEDRS(ph)PS(ph)PEPIYNSEGK ddPTM_HeLa_CUDC101_4h_R1 5 TGDLGIPPNPEDRSPSPEPIYNSEGK 26 1 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637;Q15637-7;Q15637-5 Q15637-6 SF1 Splicing factor 1 2 0 TGDLGIPPNPEDRS(0.997)PS(0.965)PEPIY(0.031)NS(0.006)EGK;T(0.001)GDLGIPPNPEDRS(0.997)PS(0.986)PEPIY(0.007)NS(0.009)EGK;T(0.019)GDLGIPPNPEDRS(0.979)PS(0.991)PEPIY(0.008)NS(0.003)EGK;TGDLGIPPNPEDRS(1)PS(0.999)PEPIY(0.001)NSEGK;T(0.005)GDLGIPPNPEDRS(0.995)PS(0.994)PEPIY(0.004)NS(0.003)EGK ;;;; 86.617 2.23E-05 1845306000 43048.9 39982.4 35597.6 35999.1 37597.8 38090.2 37084.1 35687.4 41477 45509.7 TRUE FALSE FALSE 38002.7732 41214.21035 37522.11393 37467.2989 34824.2852 37363.6929 38514.44616 39749.90936 39767.3005 45239.00628 0.840044385 0.911032619 0.829419499 0.828207823 0.769784486 0.825917631 0.851354822 0.878664512 0.87904894 1 15.46527962 -9.4285221 0.455842185 1.051725648 0.831325455 0.256885826 0.050719005 0.800415538 0.20087183 0.083512537 0.010246338 3.73E-10 9.4285221 -0.220400194 AYLPVNESFGFTADLR ddPTM_HeLa_CUDC101_4h_R1 1 AYLPVNESFGFTADLR 16 0 P13639 P13639 EEF2 Elongation factor 2 0 0 145.71 0.001367 10637000 1475.8 1261 961.19 1014.8 1190.3 1096.6 944.26 1014.7 810.02 1067.4 FALSE FALSE TRUE 1302.808961 1299.849915 1013.154839 1056.18793 1102.49394 1075.684182 980.6804245 1130.209346 776.6306328 1061.051057 1.227847569 1.225058781 0.954859648 0.995416689 1.039058331 1.01379116 0.924253755 1.06517904 0.731944639 1 10.05127836 -6.741607099 24.99550878 1.11941083 0.997736165 0 0.141797857 253.457957 319443.719 0.015613313 0.022062845 1.81E-07 6.741607099 -0.121674665 APPSRT(ph)PQSGSAPTAK ddPTM_HeLa_CUDC101_4h_R1 1 APPSRTPQSGSAPTAK 16 1 Q6P1N0;Q6P1N0-2 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 APPS(0.219)RT(0.781)PQSGSAPTAK 72.615 0.032926 4091900 1066.3 866.8 1352.1 1206.1 1330.3 949.14 961.18 669.63 1185.3 1395.5 TRUE FALSE FALSE 941.3099304 893.5050806 1425.198616 1255.289971 1232.166419 931.0367359 998.2530346 745.8579725 1136.441432 1387.199504 0.678568532 0.644107122 1.02739268 0.904909472 0.888240239 0.671162824 0.719617497 0.537671741 0.819234313 1 10.43795957 -9.428296962 1.13221409 1.001334896 0.76105876 0.098159903 0.147304626 0.540991961 1.229659774 0.102966156 0.025299436 3.73E-10 9.428296962 -0.240276136 AYPLADAHLTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 AYPLADAHLTKK 12 1 B1AHD1;A0A3B3IUA2;P55769 B1AHD1 NHP2L1 "NHP2-like protein 1;NHP2-like protein 1, N-terminally processed" 0 1 AYPLADAHLTK(1)K 77.597 0.015562 0 2094.5 1141.5 879.39 624.78 2520.8 1930 1987.1 1916.5 1617.3 1211.2 FALSE TRUE FALSE 1848.985885 1176.668262 926.9324834 650.2612289 2334.845606 1893.188466 2063.743113 2134.666613 1550.634209 1203.995729 1.535708011 0.977302688 0.769880209 0.540085993 1.939247417 1.572421248 1.714078434 1.772985205 1.287906736 1 10.23361456 -5.731559005 24.999988 1.15107753 1.734478449 0.592778082 0.284323829 162.2316452 135733.4305 0.049912248 0.099813951 1.86E-06 5.731559005 0.583400919 LYFHSDTCLPLRPQEMEVDS(ph)EDEKDPEWLR ddPTM_HeLa_CUDC101_4h_R1 1 LYFHSDTCLPLRPQEMEVDSEDEKDPEWLR 30 2 J3QQW9;Q15022 J3QQW9 SUZ12 Polycomb protein SUZ12 1 0 LYFHS(0.001)DT(0.004)CLPLRPQEMEVDS(0.995)EDEKDPEWLR 54.263 0.0032246 34814000 1367.3 1033.8 1124.6 1183.8 1138.2 1040.8 1112.4 1381.8 1057.1 696.75 TRUE FALSE FALSE 1207.027167 1065.650153 1185.399278 1232.080481 1054.237254 1020.948474 1155.305641 1539.098527 1013.525891 692.6057 1.742733516 1.538610139 1.711506674 1.778906066 1.522131934 1.47406883 1.66805679 2.222185764 1.463351934 1 9.43589045 -9.428178074 0.571288468 0.839912327 1.709956758 0.306191812 0.244190758 0.717294132 0.300488741 0.344041536 0.045831009 3.73E-10 9.428178074 0.870044432 IPNSYEVLFPES(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 IPNSYEVLFPESPAR 15 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 IPNSYEVLFPES(1)PAR;IPNSYEVLFPES(1)PAR ; 145.04 0.00032783 11931500 579.97 496.9 407.94 472.32 467.707 425.53 529.34 486.41 534.36 412.805 TRUE FALSE FALSE 511.9867958 512.2089 429.9944704 491.5832511 433.2051864 417.4137242 549.7568211 541.7809483 512.3334546 410.3496175 1.24768435 1.248225606 1.047873452 1.197962006 1.055697795 1.017214849 1.339727875 1.320291101 1.248529139 1 8.680709798 -9.427970812 1.138847544 0.999261197 1.183856074 0 0.130984969 0.536833328 1.237569133 0.078643171 0.019446198 3.73E-10 9.427970812 0.184594876 TGQPAQPAPSAQQPPRPPAS(ph)PDEPSVAASSVGSSR ddPTM_HeLa_CUDC101_4h_R1 1 TGQPAQPAPSAQQPPRPPASPDEPSVAASSVGSSR 35 1 O94964-2 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 TGQPAQPAPS(0.001)AQQPPRPPAS(0.935)PDEPS(0.052)VAAS(0.01)S(0.001)VGSSR 72.024 1.78E-06 36382000 758.04 709.3 756.9 873.01 759.98 704.36 673.87 721.51 901.6 971.11 TRUE FALSE FALSE 669.1837003 731.1526923 797.8203035 908.6151213 703.9177895 690.9255065 699.8613916 803.643782 864.4356664 965.3337945 0.693214828 0.757409195 0.826470914 0.941244496 0.729196257 0.715737407 0.724994189 0.83250352 0.895478508 1 9.914884076 -9.427349374 1.11616021 1.002029662 0.771062006 0.421362466 0.076230927 0.302403633 0.66441864 0.055023523 0.013345885 3.74E-10 9.427349374 -0.230967655 SNS(ph)SSEAVLGQEELSAQAK ddPTM_HeLa_CUDC101_4h_R1 1 SNSSSEAVLGQEELSAQAK 19 0 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5;Q9BXF6 RAB11FIP5 Rab11 family-interacting protein 5 1 0 S(0.007)NS(0.735)S(0.202)S(0.056)EAVLGQEELSAQAK 209.25 3.44E-24 5371300 904.68 814.19 522.68 668.41 627.2 866.71 703.95 742.39 623.29 556.54 TRUE FALSE FALSE 798.6347818 839.2742288 550.9376618 695.6706489 580.9327056 850.1789508 731.1015873 826.9006768 597.5977224 553.2296753 1.443586303 1.517044848 0.995857031 1.257471679 1.050075098 1.53675587 1.321515493 1.494678817 1.080198241 1 9.111734735 -9.427326913 1.149418713 0.999473563 1.328706515 0.290389644 0.178310705 0.474448883 1.118460693 0.124315743 0.031055042 3.74E-10 9.427326913 0.329232952 HGHFGWPGWEMGPPGNWS(ph)PRPPR ddPTM_HeLa_CUDC101_4h_R1 1 HGHFGWPGWEMGPPGNWSPRPPR 23 1 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8 Q13501 SQSTM1 Sequestosome-1 1 0 HGHFGWPGWEMGPPGNWS(1)PRPPR 50.404 0.019544 32429000 1568 1413.8 2155.8 1978.5 2567 1999.7 1825.4 948.46 1999.3 3045.8 TRUE FALSE FALSE 1384.201417 1457.357502 2272.349069 2059.191782 2377.637524 1961.559054 1895.806289 1056.428853 1916.888008 3027.683446 0.457181684 0.48134408 0.750523993 0.680121227 0.785299245 0.647874551 0.626157365 0.348923152 0.633120352 1 11.56399866 -9.425920339 1.140786698 1.001236586 0.596731088 0.074259307 0.16889765 0.301569539 0.69861032 0.096767678 0.024042402 3.75E-10 9.425920339 -0.404505498 RPIS(ph)DDDCPSASK ddPTM_HeLa_CUDC101_4h_R1 3 RPISDDDCPSASK 13 1 Q96PU4 Q96PU4 UHRF2 E3 ubiquitin-protein ligase UHRF2 1 0 RPIS(0.847)DDDCPS(0.117)AS(0.036)K;RPIS(0.507)DDDCPS(0.472)AS(0.021)K;RPIS(1)DDDCPSASK ;; 140.77 0.0014907 133919000 11147.4 9094.9 9718.6 8793.1 9395.3 8355.8 8259.5 7911.2 9603.5 7277.9 TRUE FALSE FALSE 9840.71867 9375.103089 10244.01691 9151.720625 8702.227437 8196.427037 8578.071682 8811.77903 9207.639665 7234.610727 1.360227805 1.295868353 1.415973478 1.264991438 1.202860495 1.132946519 1.185699135 1.218003202 1.272720816 1 12.82069968 -9.425549392 1.158301098 1.000221524 1.266608301 0 0.114187368 0.297420175 0.714602267 0.063161727 0.015941999 3.75E-10 9.425549392 0.266386776 DTIIDVVGAPLT(ph)PNSR ddPTM_HeLa_CUDC101_4h_R1 4 DTIIDVVGAPLTPNSR 16 0 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 0 DTIIDVVGAPLT(1)PNSR;DTIIDVVGAPLT(0.997)PNS(0.003)R;DTIIDVVGAPLT(0.955)PNS(0.045)R;DTIIDVVGAPLT(1)PNSR ;;; 240.66 4.46E-43 429804200 15158.7 14552.9 13650.3 13020.8 14369.4 14939.2 14166.9 11670.2 14586.3 16102.9 TRUE FALSE FALSE 13381.82017 15001.2576 14388.27651 13551.8445 13309.39799 14654.25965 14713.32208 12998.6884 13985.04654 16007.11923 0.835991784 0.937161608 0.898867329 0.846613579 0.831467411 0.915483882 0.919173642 0.812056698 0.873676664 1 13.96642607 -9.425350355 1.012303813 1.004275393 0.874243415 0 0.055672195 0.33801078 0.585761031 0.033312738 0.007339322 3.76E-10 9.425350355 -0.130031978 RS(ph)PPADAIPK ddPTM_HeLa_CUDC101_4h_R1 2 RSPPADAIPK 10 1 P18754-2;M0R1Q8;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;C9JW69;P18754 P18754-2 RCC1 Regulator of chromosome condensation 1 0 RS(1)PPADAIPK;RS(1)PPADAIPK ; 104.17 0.0062507 46262000 12694.4 18813.7 26730 19023.4 30985 24797 22941 20331.9 25756 52432 TRUE FALSE FALSE 11206.38168 19393.3278 28175.10465 19799.25648 28699.29828 24324.03854 23825.84205 22646.40131 24694.32678 52120.13213 0.215010615 0.372088999 0.54058007 0.379877327 0.550637481 0.466691805 0.457133186 0.434503912 0.47379632 1 15.66955312 -9.425312129 1.125572291 1.003639693 0.414727893 0.109391298 0.1822483 0.168399834 0.377853215 0.078282352 0.01920717 3.76E-10 9.425312129 -0.5889118 S(ph)PPSLALR ddPTM_HeLa_CUDC101_4h_R1 1 SPPSLALR 8 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 S(1)PPSLALR 93.598 0.024705 13095000 1872.7 1921.2 2046.2 1873.9 2141 1820.8 2084.5 1523.4 2050.2 2711.2 TRUE FALSE FALSE 1653.184945 1980.389895 2156.823761 1950.325742 1983.062695 1786.071274 2164.899863 1696.817698 1965.689888 2695.073662 0.613409929 0.734818466 0.800283789 0.723663241 0.735810202 0.662717053 0.803280405 0.629599748 0.729364068 1 11.39610899 -9.425282649 1.095847154 1.003769577 0.709790001 0.061185662 0.101501621 0.204807675 0.430845219 0.047072254 0.011242713 3.76E-10 9.425282649 -0.293979577 AEAS(ph)PNDTAGAR ddPTM_HeLa_CUDC101_4h_R1 1 AEASPNDTAGAR 12 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 AEAS(0.971)PNDT(0.029)AGAR 109.99 0.0057556 12211000 2942.9 2862.9 2961.7 2553.8 3165.1 2268.1 2736.1 2428.3 3401.8 3415.8 TRUE FALSE FALSE 2597.937723 2951.102556 3121.818461 2657.955002 2931.616879 2224.839771 2841.632294 2704.727856 3261.576364 3395.48267 0.765115884 0.869126084 0.919403444 0.782791509 0.863387378 0.655235202 0.836886113 0.796566533 0.960563396 1 11.72940095 -9.425115711 0.836060052 1.017417587 0.808378308 0.489052352 0.068751384 0.493667064 0.530233747 0.07144106 0.012996157 3.76E-10 9.425115711 -0.209039279 SYS(ph)PSFQR ddPTM_HeLa_CUDC101_4h_R1 1 SYSPSFQR 8 0 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 S(0.113)YS(0.684)PS(0.203)FQR 109.29 0.011928 46609000 4544.6 3911.6 3829.3 3760.1 3721.5 3729.3 3776.4 3112.9 3450.9 3350.7 TRUE FALSE FALSE 4011.888877 4032.11176 4036.323541 3913.453131 3446.972359 3658.169816 3922.057013 3467.259953 3308.652441 3330.769887 1.204492959 1.210564493 1.211829 1.174939507 1.034887571 1.098295571 1.177522659 1.040978534 0.99335966 1 11.70163997 -9.425091194 1.179004945 1.000782821 1.150772112 0.459281743 0.063348139 0.375826538 0.941913421 0.04518938 0.011615732 3.76E-10 9.425091194 0.149989291 AYTNFDAER ddPTM_HeLa_CUDC101_4h_R1 1 AYTNFDAER 9 0 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4;H0YMW4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 154.01 0.0016367 57028000 4027.7 1944 1197.7 2390.8 2479.5 2442.1 2378.2 1949.7 1525.5 1562.4 FALSE FALSE TRUE 3555.579112 2003.892336 1262.451285 2488.307158 2296.592225 2395.521011 2469.927971 2171.645967 1462.618244 1553.106775 2.289333334 1.29024763 0.812855436 1.602148157 1.478708522 1.542405873 1.590314336 1.398259284 0.941737083 1 10.6009413 AYTPSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 AYTPSKR 7 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 0 1 ; AYTPSK(1)R;AYTPSK(1)R 101.64 0.016525 9564100 6161.2 4073.8 3830.3 5685.1 4363.7 5062.9 5004.3 3745.5 2217.9 1222.39 FALSE TRUE FALSE 5438.993476 4199.308949 4037.377604 5916.962951 4041.798545 4966.333618 5197.317527 4171.87258 2126.477223 1215.11917 4.476098814 3.455882397 3.32261864 4.869450748 3.326256918 4.087116507 4.277208076 3.433303238 1.75001537 1 10.24688209 -9.337487457 0.856726069 0.829414687 3.947239275 0.768172791 0.550178952 0.211812903 0.253536835 0.449584807 0.095563924 4.60E-10 9.337487457 3.117824588 DGPVVTALK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DGPVVTALKK 10 1 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 0 1 ; DGPVVTALK(1)K;DGPVVTALK(1)K 96.342 0.0070233 524330 446.87 490.1 597.79 912.83 1199.1 1379.06 1101.22 750.27 139.41 307.792 FALSE TRUE FALSE 394.488576 505.1994001 630.1083356 950.059153 1110.644782 1352.756728 1143.694424 835.6777041 133.6634608 305.9612395 1.289341672 1.651187585 2.059438433 3.105161799 3.630017919 4.421333664 3.738036969 2.731318861 0.436864032 1 8.257205087 -6.408247655 1.300132167 1.134955513 3.718148957 0.867777305 0.455908365 0.094363476 0.315991749 0.069715988 0.124591249 3.91E-07 6.408247655 2.583193445 up RPTPNDDTLDEGVGLVHS(ph)NIATEHIPSPAKK ddPTM_HeLa_CUDC101_4h_R1 1 RPTPNDDTLDEGVGLVHSNIATEHIPSPAKK 31 2 Q01581 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 1 0 RPT(0.001)PNDDT(0.001)LDEGVGLVHS(0.907)NIAT(0.071)EHIPS(0.02)PAKK 44.365 0.016484 149430000 1521.8 1726.4 1157.6 1248.6 1946.4 1489.2 1305.8 1202.9 1348.1 1829 TRUE FALSE FALSE 1343.416911 1779.588338 1220.183358 1299.523305 1802.81795 1460.795991 1356.165143 1339.833274 1292.530747 1818.121027 0.738904006 0.978806312 0.671123286 0.714761716 0.991583026 0.803464659 0.745915769 0.73693294 0.710915681 1 10.82823252 -9.425061106 0.94708322 1.010728426 0.795925966 0 0.135191983 0.562921511 0.826995515 0.089007658 0.018333079 3.76E-10 9.425061106 -0.21480246 CAEYTFQAEGRLCQATYEGEWCR ddPTM_HeLa_CUDC101_4h_R1 1 CAEYTFQAEGRLCQATYEGEWCR 23 1 H7C0M4;G5E9N5;Q60I27-2;Q60I27 H7C0M4 ALS2CL ALS2 C-terminal-like protein 0 0 7.1933 0.037772 1271100 399.23 265.76 311.98 231.33 306.91 184.29 199.85 270.52 189.04 139.14 FALSE FALSE TRUE 352.4328646 273.9477506 328.8465825 240.7646373 284.2698608 180.7749753 207.5582814 301.3149033 181.2476912 138.3123891 2.548093247 1.980645063 2.377564184 1.740730811 2.055274026 1.307004936 1.500648516 2.178509859 1.310422677 1 7.111786579 -5.287392768 24.67854023 1.835139605 1.645913519 0.032622615 0.476809952 2772.256461 2636077.347 0.091222934 0.204049416 5.16E-06 5.287392768 -0.189226086 SPS(ph)GSAFGSQENLR ddPTM_HeLa_CUDC101_4h_R1 1 SPSGSAFGSQENLR 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 S(0.007)PS(0.906)GS(0.086)AFGSQENLR 214.89 4.13E-24 38726000 381.26 402.88 376.6 426.13 464.19 432.48 265.32 302.48 374.7 522.88 TRUE FALSE FALSE 336.5692808 415.2922553 396.9601352 443.5094233 429.9476285 424.2311646 275.5534813 336.9131005 359.2547074 519.7698865 0.647535168 0.798992527 0.763722842 0.853280336 0.827188415 0.816190348 0.530145144 0.648196653 0.691180303 1 9.021729242 -9.424966654 1.064065838 1.005487958 0.733273497 0 0.13411304 0.379049863 0.742485047 0.079770683 0.018501276 3.76E-10 9.424966654 -0.272214461 QPS(ph)GAGLCDISEGTVVPEDR ddPTM_HeLa_CUDC101_4h_R1 2 QPSGAGLCDISEGTVVPEDR 20 0 H0Y332;Q5T5C0-3;Q5T5C0-2;Q5T5C0 H0Y332 STXBP5 Syntaxin-binding protein 5 1 0 QPS(1)GAGLCDISEGTVVPEDR;QPS(0.893)GAGLCDIS(0.1)EGT(0.007)VVPEDR ; 126.62 2.02E-05 24262000 913.16 553.01 825.47 836.14 736.42 856.36 711.21 606.38 853.83 554.56 TRUE FALSE FALSE 806.1207691 570.0475826 870.0974051 870.2414033 682.0957638 840.0263598 738.6416079 675.4078481 818.634766 551.2614525 1.462320221 1.03407844 1.5783752 1.578636415 1.237336224 1.523825684 1.339911588 1.225204202 1.485020878 1 9.106592913 -9.424697871 0.786181282 0.95784941 1.384215588 0 0.223318583 0.63936108 0.588269692 0.182527024 0.03133376 3.76E-10 9.424697871 0.426366178 CCSGAIIVLTK ddPTM_HeLa_CUDC101_4h_R1 2 CCSGAIIVLTK 11 0 P14618;B4DNK4;P14618-3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 178.08 0.00099503 21021500 6464.4 4975.2 4979.9 5288.2 4921 4783.3 4753.3 4364.1 5285.3 875 FALSE FALSE TRUE 5706.652831 5128.480015 5249.128457 5503.875654 4557.987634 4692.066522 4936.636373 4860.891504 5067.437697 869.7954611 6.560913556 5.896190822 6.034899804 6.32778153 5.240298252 5.394448157 5.675629035 5.588545493 5.826010739 1 9.76453237 -9.2722636 0.868933477 0.818979288 5.865308594 0 1.520747556 0.117896134 0.150714171 0.398436173 0.094198703 5.34E-10 9.2722636 5.046329305 CCSGAIIVLTK(ac)SGR ddPTM_HeLa_CUDC101_4h_R1 2 CCSGAIIVLTKSGR 14 1 P14618;B4DNK4;P14618-3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 1 ; CCSGAIIVLTK(1)SGR;CCSGAIIVLTK(1)SGR 210.15 1.00E-19 5207000 1709.48 1396.86 945.34 1260.02 1486.49 1347.17 1307.67 1478.31 1256.91 237.47 FALSE TRUE FALSE 1509.097346 1439.895601 996.4479399 1311.409062 1376.834594 1321.474977 1358.10727 1646.594835 1205.099638 236.0575179 6.392922197 6.099765912 4.221208241 5.555464082 5.832623365 5.598105871 5.753289631 6.975396715 5.105110181 1 7.88299462 -9.294767326 0.792360828 0.662807233 5.800508397 0.188661861 1.42290027 0.204174741 0.205858414 0.678625724 0.142144613 5.07E-10 9.294767326 5.137701164 CDAERENFHR ddPTM_HeLa_CUDC101_4h_R1 1 CDAERENFHR 10 1 Q9H3U1;A0A1W2PNX8;Q9H3U1-2 Q9H3U1 UNC45A Protein unc-45 homolog A 0 0 78.264 0.027014 1660600 1160.9 1130.8 1479.4 1496.1 1505.2 1189.1 1271.6 1334.3 1644.7 714.37 FALSE FALSE TRUE 1024.821062 1165.638608 1559.380839 1557.117425 1394.164395 1166.419899 1320.646038 1486.191319 1576.90477 710.1208955 1.443164211 1.641465017 2.195937127 2.192749762 1.963277526 1.642565239 1.859748173 2.092870845 2.220614518 1 9.471920849 -7.560018615 0.949417693 1.111550313 1.974942015 0 0.394884338 0.166607387 0.309546799 0.050979908 0.051608023 2.75E-08 7.560018615 0.863391703 S(ph)TTPTSSPFR ddPTM_HeLa_CUDC101_4h_R1 1 STTPTSSPFR 10 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;A0A2R8Y7F4;A0A2R8YET2;H7C5N8;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.62)T(0.037)T(0.279)PT(0.018)S(0.037)S(0.01)PFR 85.963 0.034579 14547000 5275.8 4080.2 3702.3 4136.5 4550.6 4184.6 3909.9 3657.3 3128.9 2938.8 TRUE FALSE FALSE 4657.378722 4205.906126 3902.457537 4305.204349 4214.911304 4104.785727 4060.706153 4073.632249 2999.925418 2921.319887 1.594272076 1.43972803 1.335854233 1.473718907 1.442810602 1.405113403 1.390024479 1.394449224 1.02690754 1 11.51240463 -9.424171774 1.11156251 0.995964675 1.444793229 0.865837068 0.066067402 0.162420044 0.353787341 0.057257325 0.013896512 3.77E-10 9.424171774 0.448828554 CDENILWLDYK ddPTM_HeLa_CUDC101_4h_R1 2 CDENILWLDYK 11 0 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BQ34;H3BUW1;H3BTJ2 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 179.19 7.48E-07 209391000 10057.7 9322.3 8274.7 8361.3 9263.3 8774.4 8274 7937.7 9565.7 3135.5 FALSE FALSE TRUE 8878.751652 9609.509013 8722.055312 8702.309955 8579.964814 8607.042939 8593.130952 8841.295683 9171.397797 3116.849907 2.848629841 3.083083659 2.798355896 2.792020859 2.752768042 2.7614557 2.756992223 2.836612589 2.942521479 1 11.60587297 -9.125903476 0.723655183 0.896708492 2.84044462 0 0.60341078 0.105692488 0.092804436 0.121366037 0.029248029 7.48E-10 9.125903476 1.943736128 VSKS(ph)PSPASTSTVPNMTDAPTAPK ddPTM_HeLa_CUDC101_4h_R1 1 VSKSPSPASTSTVPNMTDAPTAPK 24 1 Q659A1 Q659A1 ICE2 Little elongation complex subunit 2 1 0 VS(0.268)KS(0.532)PS(0.198)PAST(0.001)S(0.001)TVPNMTDAPTAPK 107.7 5.64E-07 23736000 3929.2 3420.2 3873.5 3921.1 3662.5 3533.2 3794.5 3584.4 4285.3 4485.6 TRUE FALSE FALSE 3468.625132 3525.572308 4082.913127 4081.019406 3392.324672 3465.810097 3940.855136 3992.433607 4108.65812 4458.919452 0.777907107 0.790678627 0.915673219 0.915248515 0.760795235 0.77727578 0.883813933 0.895381415 0.921447038 1 12.12247842 -9.423934427 1.130534984 1.00079746 0.834415186 0.356485241 0.061841845 0.334244342 0.758344159 0.043935756 0.010850047 3.77E-10 9.423934427 -0.166382274 GTEVQVDDIK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 GTEVQVDDIKR 11 1 Q9Y230;Q9Y230-2 Q9Y230 RUVBL2 RuvB-like 2 0 1 GTEVQVDDIK(1)R 109.16 0.0057482 1166600 445.38 591.12 1200.9 1569.1 2753 2148.5 2074 2131.1 543.85 386.8 FALSE TRUE FALSE 393.1732316 609.3317066 1265.824287 1633.09468 2549.916675 2107.520942 2153.994875 2373.69581 521.4322728 384.4992964 1.02255904 1.584740758 3.292136809 4.247328137 6.631785022 5.481208839 5.602077546 6.173472441 1.35613323 1 8.586837148 -6.40507533 1.331575687 0.994431121 5.933659416 0.95925738 0.434604795 0.046598489 0.163556948 0.066642353 0.118589869 3.93E-07 6.40507533 4.939228294 up CEAFGWHAIIVDGHSVEELCK ddPTM_HeLa_CUDC101_4h_R1 1 CEAFGWHAIIVDGHSVEELCK 21 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 0 73.984 0.0026889 10127000 3128.9 2667.6 2642.5 2566.8 2900.9 2436.3 2287.2 2519.6 2655.4 1612.2 FALSE FALSE TRUE 2762.135085 2749.785594 2785.361543 2671.485199 2686.906386 2389.831637 2375.41807 2806.421079 2545.943288 1602.610563 1.723522326 1.715816467 1.738015216 1.666958437 1.676580979 1.491211709 1.482217905 1.751155986 1.588622556 1 10.64620818 -9.220915742 0.85810446 0.981268067 1.653127877 0.135086129 0.200329815 0.182942986 0.231979038 0.080411325 0.020132631 6.01E-10 9.220915742 0.671859811 SILPYPVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SILPYPVSPK 10 0 Q8IWI9;Q8IWI9-3;H3BP52;H3BTF4 Q8IWI9 MGA MAX gene-associated protein 1 0 SILPYPVS(1)PK 102.97 0.01303 42908000 3190.2 3418.1 3273.8 3387.2 3001 3517.7 3173.7 3194.9 3266.3 4660.9 TRUE FALSE FALSE 2816.249592 3523.40761 3450.791531 3525.344657 2779.622209 3450.605733 3296.110672 3558.594502 3131.661732 4633.17676 0.607844194 0.760473384 0.744800319 0.760891466 0.599938736 0.744760218 0.711414833 0.768067934 0.675921057 1 12.17778601 -9.423810011 1.085466197 1.004441057 0.704634016 0 0.114402419 0.199468013 0.410306808 0.046557796 0.0110379 3.77E-10 9.423810011 -0.299807041 CEFQDAYVLLSEK ddPTM_HeLa_CUDC101_4h_R1 1 CEFQDAYVLLSEK 13 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 203.82 2.26E-16 16277000 923.67 959.81 632.66 752.27 830.66 981.26 652.62 825.9 854.27 1007 FALSE FALSE TRUE 815.3988028 989.3806084 666.8635133 782.9508222 769.3838667 962.5441004 677.791772 919.9171176 819.056629 1001.010319 0.814575821 0.988382027 0.666190448 0.78216059 0.768607328 0.961572605 0.677107677 0.918988646 0.818229956 1 9.967241131 -9.367728796 0.490440185 1.048443463 0.809667795 0 0.117404444 1.625859578 0.497404698 0.191875955 0.025888467 4.29E-10 9.367728796 -0.238775668 CEGFELHFWR ddPTM_HeLa_CUDC101_4h_R1 2 CEGFELHFWR 10 0 Q9UGI8;Q9UGI8-2 Q9UGI8 TES Testin 0 0 ; ; 157.75 7.80E-05 27718000 20355.8 15824.5 12825.5 17536.6 16335 16994.7 15361.2 13908.9 12380.5 8428.9 FALSE FALSE TRUE 17969.72398 16312.03409 13518.88533 18251.81835 15129.99959 16670.55441 15953.68663 15492.23295 11870.17055 8378.764528 2.144674662 1.946830471 1.613470015 2.178342438 1.805755436 1.989619634 1.904061939 1.848987748 1.416696998 1 13.03252181 -9.344060594 0.947349041 0.970846572 1.939189622 0.665164224 0.196412054 0.18139282 0.277316242 0.125286437 0.029151064 4.53E-10 9.344060594 0.968343049 CELLYEGPPDDEAAMGIK ddPTM_HeLa_CUDC101_4h_R1 1 CELLYEGPPDDEAAMGIK 18 0 P13639 P13639 EEF2 Elongation factor 2 0 0 177.81 4.73E-07 7095400 964.35 827.29 832.87 780.4 915.69 816.62 833.8 710.66 851.4 390.43 FALSE FALSE TRUE 851.3103549 852.7778243 877.8974715 812.2280852 848.141373 801.0443341 865.9599453 791.5586618 816.3049316 388.107705 2.193489961 2.19727105 2.261994442 2.092790415 2.185324749 2.063974314 2.23123616 2.039533489 2.103294836 1 8.600313265 -9.159969936 0.715799329 0.921493434 2.171501485 0.041209322 0.345379036 0.10679152 0.089872203 0.07918764 0.018089948 6.92E-10 9.159969936 1.250008051 SAPT(ph)APTPPPPPPPAT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SAPTAPTPPPPPPPATPR 18 0 A6NHN7;A6NHB5;Q14202-2;Q14202 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 2 0 S(0.051)APT(0.807)APT(0.145)PPPPPPPAT(0.997)PR 93.029 0.0010426 0 796.73 710.44 747.15 800.37 1254.4 910.02 1046.5 978.51 905.33 1445.7 TRUE FALSE FALSE 703.3385172 732.3278143 787.543189 833.0125481 1161.865411 892.6628847 1086.863856 1089.899623 868.0119142 1437.100912 0.489414843 0.509586911 0.548008273 0.579647916 0.808478654 0.621155325 0.75628917 0.758401594 0.604002062 1 10.48894565 -9.423662205 1.162390701 0.999199136 0.621907329 0 0.158640711 0.268660348 0.651395723 0.080825516 0.020529326 3.77E-10 9.423662205 -0.377291807 CEYLMELMTPAACPEPPPEAPTEDDHDEL ddPTM_HeLa_CUDC101_4h_R1 1 CEYLMELMTPAACPEPPPEAPTEDDHDEL 29 0 K7ELL7;P14314-2;P14314;A0A0C4DGP4 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 0 75.529 3.44E-05 4023900 2213.3 2091.3 1935.4 1713.7 2427 1962.1 1954.1 2179.8 2197.7 134.45 FALSE FALSE TRUE 1953.860329 2155.730474 2040.033578 1783.592093 2247.965045 1924.676212 2029.470292 2427.939621 2107.109876 133.6502854 14.61920057 16.12963614 15.26396724 13.34521724 16.81975492 14.40083877 15.18493047 18.16636316 15.76584643 1 7.062319108 -9.008996821 0.616437785 1.31E-21 15.75734504 0 4.64428571 0.147385719 0.09378542 1.241351388 0.301087265 9.79E-10 9.008996821 15.75734504 CGEDDETIPSEYR ddPTM_HeLa_CUDC101_4h_R1 2 CGEDDETIPSEYR 13 0 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;F8W7E0;P20810-2;E9PCH5;P20810-3;H0Y7F0;E7EQ12;E7EQA0;D6RAA8;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;E7EVY3 CAST Calpastatin 0 0 ; ; 169.65 2.86E-06 19386000 2271.2 1755.62 2212.2 2010.56 2091.68 2363.1 2298.5 2838.4 2433.4 2597.9 FALSE FALSE TRUE 2004.973379 1809.708571 2331.798224 2092.559327 1937.380934 2318.027805 2387.153915 3161.511983 2333.094222 2582.447575 0.77638493 0.700772627 0.902941166 0.810300797 0.750211138 0.897608853 0.924376525 1.224230847 0.903443014 1 11.33452335 -4.204041838 2.270785189 0.862959055 1.34960314 0.63794951 0.085093462 0.496904473 2.593190637 0.015492813 0.507723397 6.25E-05 4.204041838 0.486644085 ELPPS(ph)PEKK ddPTM_HeLa_CUDC101_4h_R1 6 ELPPSPEKK 9 1 E7EVA0;P27816;P27816-6;P27816-5;P27816-4;H0Y2V1;H7C4C5;B5MEG9;F8W9U4;P27816-3 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK;ELPPS(1)PEKK ;;;;; 147.62 0.00045084 1497259000 25985.2 23784.9 23943.4 24662.2 21867.4 23184.2 21284.6 23708.4 23326.9 29929.5 TRUE FALSE FALSE 22939.25425 24517.68458 25237.85263 25668.03112 20254.28547 22742.00001 22105.55415 26407.26842 22365.35531 29751.478 0.771029064 0.82408291 0.848289037 0.8627481 0.680782496 0.764398999 0.743006924 0.887595178 0.751739302 1 14.86067372 -9.423473687 0.627540908 1.039601813 0.790244492 0 0.097326539 0.625929572 0.329402646 0.091332989 0.013012412 3.77E-10 9.423473687 -0.24935732 MEDLT(ph)NPEDIR ddPTM_HeLa_CUDC101_4h_R1 1 MEDLTNPEDIR 11 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 0 MEDLT(1)NPEDIR 119.39 0.021113 21428000 874.56 610.38 668.4 663.84 864.4 816.72 597.1 726.57 614.62 497.74 TRUE FALSE FALSE 772.0454025 629.1850843 704.5357258 690.9142646 800.6349341 801.1424267 620.130347 809.2797919 589.2851035 494.7794203 1.560383013 1.271647644 1.423939026 1.396408654 1.618165391 1.619191086 1.253347091 1.635637536 1.191005687 1 8.950641684 -9.423180049 0.752685267 0.940856648 1.475260633 0.50690024 0.143746301 0.446315444 0.368420811 0.155766588 0.025751034 3.77E-10 9.423180049 0.534403985 NAPAAVDEGSIS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 NAPAAVDEGSISPR 14 0 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 NAPAAVDEGSIS(1)PR;NAPAAVDEGSIS(1)PR ; 254.89 7.54E-57 623780000 6026.8 5149.3 4056 4271.5 4499.2 4218.3 4237.8 4118.8 5060.7 2623.1 TRUE FALSE FALSE 5320.34764 5307.94383 4275.279629 4445.710233 4167.30298 4137.842956 4401.253366 4587.667543 4852.095804 2607.497685 2.040403591 2.035646613 1.639610134 1.704971881 1.598200069 1.586901872 1.687922253 1.759413851 1.860824588 1 11.34845026 -9.422986097 1.152035256 1.000066473 1.772513901 0 0.302401557 0.209192132 0.496653551 0.12842358 0.032362672 3.78E-10 9.422986097 0.772447428 S(ph)EDEDS(ph)LEEAGSPAPGPCPR ddPTM_HeLa_CUDC101_4h_R1 1 SEDEDSLEEAGSPAPGPCPR 20 0 Q8TBB5-2;Q8TBB5-3;Q8TBB5 Q8TBB5-2 KLHDC4 Kelch domain-containing protein 4 2 0 S(1)EDEDS(0.815)LEEAGS(0.185)PAPGPCPR 241.98 3.90E-44 16031000 3457.1 2968.8 2565.9 2327.8 2688.1 2727.1 2531.1 2503.6 3677.1 1868.9 TRUE FALSE FALSE 3051.863979 3060.265209 2704.620315 2422.737746 2489.804218 2675.085111 2628.725375 2788.599704 3525.528382 1857.7837 1.642744513 1.647266692 1.455831654 1.304101089 1.340201348 1.439933568 1.414979244 1.501035726 1.897706596 1 10.85936682 -9.422736419 1.154858603 1.000349665 1.477059998 0 0.295880548 0.230412315 0.550282465 0.087355776 0.022075456 3.78E-10 9.422736419 0.476710333 AQSLVISPPAPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 AQSLVISPPAPSPR 14 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AQSLVISPPAPS(1)PR;AQSLVIS(0.001)PPAPS(0.999)PR ; 146.86 0.00032489 85508000 3684.4 3792.4 4413 3042.8 3699.8 4044 3143.2 2970.3 4053.4 4842.2 TRUE FALSE FALSE 3252.520217 3909.239349 4651.580129 3166.898536 3426.873125 3966.867438 3264.434277 3308.426946 3886.317136 4813.398379 0.675722216 0.812157865 0.966381704 0.657934018 0.711944629 0.824130297 0.678197402 0.68733703 0.807395696 1 12.23284012 -9.422709915 0.991475294 1.009819505 0.749311316 0.159116576 0.107010448 0.396027155 0.652763771 0.077425584 0.016768681 3.78E-10 9.422709915 -0.260508189 EAEEES(ph)S(ph)GGEEEDEDENIEVVYSK ddPTM_HeLa_CUDC101_4h_R1 1 EAEEESSGGEEEDEDENIEVVYSK 24 0 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 2 0 EAEEES(1)S(1)GGEEEDEDENIEVVYSK 111.64 2.04E-06 5446900 9240.7 7548 6698.5 6502.2 6541 6798.9 6283.2 7181 6969.5 4276.6 TRUE FALSE FALSE 8157.519154 7780.544933 7060.641172 6767.387821 6058.483462 6669.22231 6525.545129 7998.456013 6682.21426 4251.162593 1.918891356 1.830215797 1.660873001 1.591891082 1.425135673 1.568799632 1.535002481 1.88147497 1.571855725 1 12.05364172 -9.422535168 1.142140935 0.998690888 1.683905353 0.181176384 0.227887036 0.22460467 0.522479135 0.121931644 0.030484131 3.78E-10 9.422535168 0.685214465 CHEFLIFEDR ddPTM_HeLa_CUDC101_4h_R1 2 CHEFLIFEDR 10 0 E9PFD2;P11172-4;P11172-2;P11172-3;P11172 E9PFD2 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase 0 0 ; ; 124.67 0.0034175 8637100 4074.1 3972.2 4283.5 3899.1 4612.9 4120.7 3657 3483.8 4713.7 1930.94 FALSE FALSE TRUE 3596.540174 4094.578774 4515.078967 4058.122151 4272.615557 4042.104513 3798.051715 3880.38171 4519.399291 1919.454683 1.873730183 2.133198981 2.352271719 2.114205762 2.225952816 2.105860872 1.978713928 2.021606316 2.354522527 1 10.90648078 -8.616991462 0.619690511 0.988391508 2.146019884 0 0.425847744 0.159572809 0.121516102 0.090848783 0.034056009 2.42E-09 8.616991462 1.157628376 S(ph)GDEEFKGEDELCDSGR ddPTM_HeLa_CUDC101_4h_R1 2 SGDEEFKGEDELCDSGR 17 1 M0QYL4;O43823 M0QYL4 AKAP8 A-kinase anchor protein 8 1 0 S(1)GDEEFKGEDELCDSGR;S(1)GDEEFKGEDELCDSGR ; 159.04 0.00025098 37581000 3650.5 2869.3 2684.47 2959.32 2952.6 2954.46 2801.84 2416.23 3551.23 2112.66 TRUE FALSE FALSE 3222.593924 2957.699732 2829.600568 3080.013861 2734.79258 2898.108598 2909.907907 2691.283856 3404.846796 2100.093804 1.534499991 1.408365534 1.347368657 1.466607756 1.302224012 1.379990071 1.385608539 1.281506498 1.621283197 1 11.03623805 -9.422530882 1.119538329 0.997258549 1.399753474 0 0.203175351 0.178861578 0.396622872 0.056643157 0.013880855 3.78E-10 9.422530882 0.402494925 CIAAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 CIAAKK 6 1 Q01780-2;Q01780 Q01780-2 EXOSC10 Exosome component 10 0 1 ; CIAAK(1)K;CIAAK(1)K 106.84 0.014985 9642100 8650.4 5055.1 8982.1 11378.6 8102 6716.9 8246.6 4625.8 6453.1 6238.5 FALSE TRUE FALSE 7636.413225 5210.841639 9467.699495 11842.66849 7504.331601 6588.786324 8564.674124 5152.382374 6187.100487 6201.393125 1.231402859 0.840269522 1.526705259 1.909678721 1.210104157 1.062468737 1.381088725 0.830842727 0.997695254 1 12.59837663 -8.554987283 0.615175873 1.005888162 1.279948873 0.101093918 0.301279755 1.49165739 1.142959105 0.197665225 0.078466202 2.79E-09 8.554987283 0.274060711 VVPS(ph)PLQFCAATPK ddPTM_HeLa_CUDC101_4h_R1 2 VVPSPLQFCAATPK 14 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 VVPS(1)PLQFCAATPK;VVPS(1)PLQFCAATPK ; 118.71 0.0015411 99002000 11627.7 8576.9 7700.2 7621.1 9046.8 9364.5 9147.5 9972.5 9144.5 5815.7 TRUE FALSE FALSE 10264.71863 8841.144123 8116.496104 7931.921399 8379.435588 9185.887765 9500.322139 11107.72909 8767.559839 5781.107958 1.775562523 1.529316558 1.403968956 1.372041736 1.449451498 1.588949356 1.643339341 1.921384131 1.516588153 1 12.4971303 -9.422197524 1.077785037 0.990327972 1.585959827 0.112021214 0.222440576 0.284863104 0.576354181 0.131648552 0.031063442 3.78E-10 9.422197524 0.595631854 APVSSTESVIQSNT(ph)PTPPPSQPLNETAEEESR ddPTM_HeLa_CUDC101_4h_R1 2 APVSSTESVIQSNTPTPPPSQPLNETAEEESR 32 0 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 APVSSTESVIQS(0.054)NT(0.806)PT(0.14)PPPSQPLNETAEEESR;APVSSTESVIQS(0.019)NT(0.748)PT(0.07)PPPS(0.163)QPLNETAEEESR ; 131.68 2.17E-17 23255000 939.38 703.09 821.89 919.72 1097.74 1003.97 844.69 629.71 997.42 997.9 TRUE FALSE FALSE 829.2673004 724.7513695 866.3238595 957.230157 1016.761907 984.820945 877.2699763 701.393641 956.3059254 991.9644464 0.835984902 0.730622324 0.873341643 0.96498434 1.024998336 0.992798632 0.88437643 0.707075383 0.964052622 1 9.954144603 -9.421973077 1.218079083 0.998375854 0.87967047 0.152631287 0.098059129 0.704490137 1.908400843 0.06761579 0.018026228 3.78E-10 9.421973077 -0.118705384 NSCNVLHPQS(ph)PNNSNR ddPTM_HeLa_CUDC101_4h_R1 1 NSCNVLHPQSPNNSNR 16 0 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 0 NSCNVLHPQS(0.966)PNNS(0.034)NR 92.932 0.0010229 0 2432.7 1748.9 1546.7 1904.5 2411.7 2039.3 1994.8 1867.8 2110.6 1390.1 TRUE FALSE FALSE 2147.542594 1802.781536 1630.319281 1982.173742 2233.793696 2000.40375 2071.740104 2080.422802 2023.600175 1381.831623 1.554127549 1.304631842 1.179824845 1.434453886 1.616545502 1.447646527 1.499271018 1.505554488 1.46443325 1 10.43236612 -9.421709091 0.862360381 0.964115291 1.448020989 0 0.185154723 0.380762487 0.443007232 0.129470172 0.024405669 3.79E-10 9.421709091 0.483905698 CIHSFQNLGIQCVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 CIHSFQNLGIQCVKK 15 1 Q2TAM5;E9PKH5;A0A087X0W8;Q04206-2;Q04206-3;Q04206-4;Q04206;E9PRX2;E9PMD5;E9PI38;E9PQS6;E9PKV4;A0A087WVP0 Q2TAM5 RELA Transcription factor p65 0 1 CIHSFQNLGIQCVK(1)K 163.62 9.81E-05 1368300 927.06 680.31 483.28 463.69 551.6 606.54 551.67 549.2 523.63 138.73 FALSE TRUE FALSE 818.3914321 701.2695447 509.4075786 482.6012824 510.9095669 594.9712601 572.9480967 611.7187081 502.0457498 137.9048278 5.934465423 5.085170374 3.693906782 3.499524202 3.704798267 4.314361358 4.154663081 4.43580343 3.64052338 1 7.107529154 -9.481305852 1.224755458 1.001438348 4.469071448 0.260129083 1.045158344 0.209186155 0.561815853 0.606169403 0.148648147 3.30E-10 9.481305852 3.4676331 CILPFDK(ac)ETGFHR ddPTM_HeLa_CUDC101_4h_R1 1 CILPFDKETGFHR 13 1 H0YJW7;A0A087WUN7;H0YJ40;G3V4X6;G3V2S9;Q9GZT3-2;Q9GZT3 H0YJW7 SLIRP "SRA stem-loop-interacting RNA-binding protein, mitochondrial" 0 1 CILPFDK(1)ETGFHR 113.69 0.005313 399000 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 ADT(ph)SQEICSPR ddPTM_HeLa_CUDC101_4h_R1 1 ADTSQEICSPR 11 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 ADT(0.686)S(0.314)QEICSPR 123.28 0.00031912 0 1748.3 1433.6 1255.1 1691 1439.8 1554.8 1689.5 1275.9 1494.3 952.25 TRUE FALSE FALSE 1543.366924 1477.767517 1322.954502 1759.966289 1333.588822 1525.14478 1754.664581 1421.143299 1432.704322 946.5859746 1.63045615 1.561155095 1.39760628 1.859277801 1.408840674 1.611205766 1.853676927 1.501335681 1.51354907 1 9.886589736 -9.421540378 0.529030242 0.842036981 1.627148987 0.118517935 0.219163828 0.659034462 0.231709667 0.270817781 0.035016522 3.79E-10 9.421540378 0.785112006 CKDDEFTHLYTLIVRPDNTYEVK ddPTM_HeLa_CUDC101_4h_R1 2 CKDDEFTHLYTLIVRPDNTYEVK 23 2 P27797;K7EJB9 P27797 CALR Calreticulin 0 0 ; ; 74.325 0.00047221 79441000 10229.5 9186.9 10189.9 10270.6 10780.1 11133 10793 9528.6 11557.8 7709.2 FALSE FALSE TRUE 9030.413517 9469.9375 10740.79682 10689.47946 9984.8735 10920.65657 11209.28963 10613.29731 11081.38259 7663.345336 1.178390523 1.235744585 1.401580687 1.394884217 1.30293926 1.425050823 1.462714929 1.384943108 1.446024172 1 12.9037586 -7.449562803 0.469483769 1.005244629 1.436245478 0 0.142505263 0.168484476 0.093719597 0.023580166 0.023455001 3.55E-08 7.449562803 0.43100085 CLELFSELAEDKENYKK ddPTM_HeLa_CUDC101_4h_R1 2 CLELFSELAEDKENYKK 17 2 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ; ; 85.287 0.0044682 79471000 5206.3 4310 4959.6 4976 5760.5 4811.9 4725.2 4865.7 5925.9 3713.7 FALSE FALSE TRUE 4596.025406 4442.785991 5227.730978 5178.942788 5335.559392 4720.121025 4907.452547 5419.59162 5681.631894 3691.610747 1.24499188 1.203481704 1.416111106 1.402895143 1.445320148 1.278607456 1.329352655 1.468083173 1.539065812 1 11.85003472 -8.279633635 0.396091724 0.963401102 1.403903062 0 0.179024569 0.400092567 0.142758869 0.073496968 0.032023455 5.25E-09 8.279633635 0.44050196 CLELFTELAEDKENYKK ddPTM_HeLa_CUDC101_4h_R1 1 CLELFTELAEDKENYKK 17 2 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 58.626 0.025882 18529000 1939 1972.6 2044.6 2223.4 2180 1850.8 2277.9 1978.6 2156.7 1568.5 FALSE FALSE TRUE 1711.713359 2033.373468 2155.137261 2314.079862 2019.185743 1815.499074 2365.759366 2203.835826 2067.799913 1559.170492 1.097835912 1.304137987 1.382233227 1.484173715 1.295038454 1.164400611 1.517319227 1.413466864 1.326217962 1 10.60656298 -7.275121423 1.917775455 1.037009061 1.375354856 0.319587673 0.130618603 0.129625994 0.901992376 0.018056886 0.021303216 5.31E-08 7.275121423 0.338345794 TCNVLVALEQQS(ph)PDIAQGVHLDR ddPTM_HeLa_CUDC101_4h_R1 2 TCNVLVALEQQSPDIAQGVHLDR 23 0 P31153-2;P31153 P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 1 0 TCNVLVALEQQS(1)PDIAQGVHLDR;TCNVLVALEQQS(1)PDIAQGVHLDR ; 117.51 7.44E-07 14484700 5373.1 4762.4 3494.41 3768.1 4552.8 4165.1 3914.53 4036.9 5017.4 2974.55 TRUE FALSE FALSE 4743.273363 4909.123899 3683.328375 3921.779405 4216.949014 4085.657657 4065.514733 4496.444378 4810.580648 2956.857244 1.604160421 1.660250561 1.245690296 1.326333699 1.42615915 1.381756818 1.374944543 1.52068362 1.626923538 1 11.52984888 -9.421536323 1.151875103 1.000166877 1.44910837 0 0.225165567 0.255814698 0.607475612 0.091203773 0.023029641 3.79E-10 9.421536323 0.448941494 SPS(ph)ASSLSSMSSVASSVSSR ddPTM_HeLa_CUDC101_4h_R1 1 SPSASSLSSMSSVASSVSSR 20 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0;F5H0N7 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 S(0.331)PS(0.639)AS(0.013)S(0.016)LS(0.001)SMSSVASSVSSR 98.062 0.0009653 7026400 445.69 321.18 440.27 516.46 374.45 515.71 516.7 246.95 580.2 522.98 TRUE FALSE FALSE 393.4468938 331.0751751 464.0723279 537.5234711 346.8275695 505.873691 536.6292921 275.0617898 556.2839104 519.8692917 0.756818878 0.636843107 0.892671168 1.033958881 0.66714379 0.973078616 1.032238874 0.529097976 1.07004572 1 9.022005129 -9.421333871 1.194600735 0.998368879 0.820715218 0.211353918 0.164860821 0.722644659 1.870652966 0.103148197 0.027007292 3.79E-10 9.421333871 -0.177653662 SIQPQVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SIQPQVSPR 9 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 0 SIQPQVS(1)PR;SIQPQVS(1)PR ; 131.12 0.0030547 215890000 6388.9 5938.1 5513.5 5307.2 5984.4 5499.6 5725.1 5976.9 6033.4 6348.3 TRUE FALSE FALSE 5640.002827 6121.045823 5811.576487 5523.650556 5542.942735 5394.704293 5945.919025 6657.286137 5784.700698 6310.540029 0.893743293 0.969971792 0.920931721 0.875305525 0.878362661 0.85487205 0.942220317 1.054947137 0.916672848 1 12.62354775 -9.421058332 1.000241299 1.002953632 0.918065008 0 0.060378437 0.717179727 1.209095994 0.045829163 0.010040522 3.79E-10 9.421058332 -0.084888624 VLPAFRES(ph)PSGR ddPTM_HeLa_CUDC101_4h_R1 1 VLPAFRESPSGR 12 1 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 VLPAFRES(0.5)PS(0.5)GR 74.649 0.026043 11297000 5950 5256.8 5140.1 5404.7 5724.2 4724.2 5546.1 5089.4 5755.7 5763.1 TRUE FALSE FALSE 5252.55002 5418.755777 5417.989354 5625.127027 5301.93717 4634.093756 5760.014935 5668.756724 5518.44761 5728.820825 0.916864077 0.945876288 0.945742504 0.981899626 0.9254849 0.808908831 1.005445119 0.989515451 0.963278095 1 12.4840225 -9.420797499 1.079578356 1.000986164 0.937166733 0.074073728 0.05265323 0.780389951 1.58627439 0.038641761 0.009152572 3.79E-10 9.420797499 -0.063819431 CLYASVLTAQPR ddPTM_HeLa_CUDC101_4h_R1 2 CLYASVLTAQPR 12 0 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 208.6 1.36E-14 9260000 1989.86 1246.72 564.72 1245.61 1053.5 956.99 1186.15 869.64 466.07 154.67 FALSE FALSE TRUE 1756.611627 1285.129965 595.2504714 1296.41136 975.7854039 938.7370102 1231.900203 968.6363024 446.8583973 153.750016 11.42511509 8.358568013 3.871547379 8.431942928 6.346571074 6.105605937 8.012358211 6.300072857 2.906395778 1 7.26444275 -9.556498693 1.341476662 1.016719218 7.786687279 0.53155277 1.977995599 0.255842342 0.828212469 1.553881136 0.370653297 2.78E-10 9.556498693 6.769968062 LRECELS(ph)PGVNR ddPTM_HeLa_CUDC101_4h_R1 3 LRECELSPGVNR 12 1 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;H7C3A1 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 LRECELS(1)PGVNR;LRECELS(1)PGVNR;LRECELS(1)PGVNR ;; 80.102 0.019638 84180000 5210.16 4185.01 3885.4 4231.24 4239.17 4168.07 3617.09 3989.39 4338.56 3105.08 TRUE FALSE FALSE 4599.432943 4313.945198 4095.456477 4403.808256 3926.454875 4088.571009 3756.602373 4443.526032 4159.72272 3086.610846 1.490124014 1.397631711 1.326845748 1.426745539 1.272092619 1.324614995 1.217063815 1.439613302 1.347666722 1 11.59180789 -9.420556239 1.124994797 0.998107983 1.366605228 0.040776453 0.130159086 0.208339589 0.467780416 0.060450599 0.014930409 3.80E-10 9.420556239 0.368497245 LDEDEDEDDADLSKYNLDAS(ph)EEEDSNKK ddPTM_HeLa_CUDC101_4h_R1 3 LDEDEDEDDADLSKYNLDASEEEDSNKK 28 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 LDEDEDEDDADLSKY(0.019)NLDAS(0.959)EEEDS(0.021)NKK;LDEDEDEDDADLS(0.012)KY(0.048)NLDAS(0.875)EEEDS(0.065)NKK;LDEDEDEDDADLSKY(0.001)NLDAS(0.994)EEEDS(0.004)NKK ;; 61.612 0.00086377 201197000 7579.9 6879.3 6785.4 6732.6 8494.4 7348.6 7380.6 7495.2 7966.1 9185.4 TRUE FALSE FALSE 6691.395612 7091.243079 7152.239249 7007.184529 7867.785035 7208.437699 7665.272214 8348.423271 7637.733986 9130.764832 0.732840648 0.776631882 0.783312174 0.767425802 0.861678641 0.78946702 0.839499467 0.914318069 0.836483485 1 13.15652 -9.420463272 1.137735247 1.000464509 0.800724301 0.148058441 0.069790165 0.239392211 0.552204242 0.037794953 0.009441826 3.80E-10 9.420463272 -0.199740208 SRS(ph)FSGLIK ddPTM_HeLa_CUDC101_4h_R1 1 SRSFSGLIK 9 1 Q14CB8-4;Q14CB8-6;Q14CB8-7;Q14CB8-3;Q14CB8;Q14CB8-2 Q14CB8-4 ARHGAP19 Rho GTPase-activating protein 19 1 0 S(0.011)RS(0.989)FSGLIK 85.522 0.01965 8903600 1436.4 1371.6 1208.3 1352.3 1673 1345.2 1702.9 1609.4 1288.5 2006.3 TRUE FALSE FALSE 1268.027369 1413.85737 1273.624353 1407.452639 1549.586123 1319.542551 1768.581423 1792.607591 1235.387485 1994.366438 0.635804607 0.708925573 0.638611004 0.705714162 0.776981649 0.661634956 0.886788601 0.898835618 0.619438565 1 10.96171479 -9.420359897 1.141124497 1.000422003 0.728545182 0 0.146134312 0.30972626 0.719564328 0.066623195 0.016695646 3.80E-10 9.420359897 -0.271876821 CNEIINWLDK ddPTM_HeLa_CUDC101_4h_R1 2 CNEIINWLDK 10 0 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 171.62 1.68E-06 27392000 3436 3094.3 2773.3 2654.1 2354.1 2666.7 2524.1 2227.4 2874.4 2737.1 FALSE FALSE TRUE 3033.237289 3189.631715 2923.232987 2762.34567 2180.442733 2615.837141 2621.455383 2480.958213 2755.916015 2720.819607 1.114824842 1.172305472 1.074394267 1.015262336 0.801391877 0.961415131 0.963480039 0.911842228 1.012899204 1 11.40982559 -5.988385296 24.56922062 1.066715405 0.915996034 0.611836402 0.061918387 113.7200353 240556.1325 0.010359266 0.018766114 1.03E-06 5.988385296 -0.150719371 CNELENERYEAIVRARNSMQLLEEANLQK ddPTM_HeLa_CUDC101_4h_R1 1 CNELENERYEAIVRARNSMQLLEEANLQK 29 3 Q96NL6;A0A494C0G8 Q96NL6 SCLT1 Sodium channel and clathrin linker 1 0 0 36.982 0.036267 21902000 778.53 763.39 690.49 611.01 825.28 901.6 733.12 1128.4 936.02 752.41 FALSE FALSE TRUE 687.2718936 786.9091411 727.819978 635.9296288 764.4007386 884.4034822 761.396684 1256.852495 897.4368594 747.9346319 0.918892995 1.052109513 0.973106401 0.850247604 1.022015436 1.182460932 1.017998969 1.680430938 1.199886756 1 9.546768376 -1.663941146 1.050512244 0.967979186 200 0.742612791 0.112188007 116.1342042 0.577438997 0.012339186 55132.00827 0.021679979 1.663941146 199.0320208 LGAGGGSPEKS(ph)PS(ph)AQELK ddPTM_HeLa_CUDC101_4h_R1 1 LGAGGGSPEKSPSAQELK 18 1 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 2 0 LGAGGGS(0.138)PEKS(0.868)PS(0.995)AQELK 113.67 0.00394 29003000 5784.3 5459.9 5844.2 5538.8 5589.8 5617.9 5580.3 5050.2 6223 7031.3 TRUE FALSE FALSE 5106.273122 5628.113047 6160.15513 5764.696205 5177.45159 5510.747918 5795.53404 5625.094354 5966.485306 6989.477515 0.730565784 0.805226576 0.881347013 0.82476783 0.740749445 0.788434887 0.829179868 0.804794685 0.853638243 1 12.7709689 -9.420232527 1.086277864 1.002839126 0.796609969 0.322501903 0.059799595 0.215342955 0.444439953 0.034526868 0.008236293 3.80E-10 9.420232527 -0.206229157 MPTQSEEEKLSPSPTT(ph)EDPR ddPTM_HeLa_CUDC101_4h_R1 1 MPTQSEEEKLSPSPTTEDPR 20 1 E7EQY4;F6RRE2;E7EV10;Q9BTC8-2;Q9BTC8 E7EQY4 MTA3 Metastasis-associated protein MTA3 1 0 MPTQSEEEKLSPS(0.282)PT(0.282)T(0.436)EDPR 97.095 0.0012385 29161000 2477.4 2451.3 2384.6 2097.3 2350.8 2550.2 2160 2045.1 2829.2 2803.3 TRUE FALSE FALSE 2187.002927 2526.821647 2513.518689 2182.836959 2177.386167 2501.559184 2243.311924 2277.905917 2712.579179 2786.625847 0.784821159 0.906767462 0.901993603 0.783326173 0.781370118 0.897701852 0.805028033 0.817442327 0.97342784 1 11.44430359 -9.420146762 0.970924456 1.007414909 0.832437975 0.610135956 0.048411558 0.327384088 0.512960202 0.042557853 0.009058538 3.80E-10 9.420146762 -0.174976934 VETGVLKPGMVVTFAPVNVT(ph)TEVK ddPTM_HeLa_CUDC101_4h_R1 2 VETGVLKPGMVVTFAPVNVTTEVK 24 1 Q5VTE0;P68104;A0A087WVQ9 Q5VTE0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 1 0 VETGVLKPGMVVTFAPVNVT(0.816)T(0.184)EVK;VETGVLKPGMVVTFAPVNVT(0.907)T(0.093)EVK ; 134.67 1.18E-08 28610000 4142.1 3915.7 3799.9 3928.3 4095.6 3903.6 3955.6 3518 4435.5 4739.1 TRUE FALSE FALSE 3656.569317 4036.338076 4005.334088 4088.513054 3793.475748 3829.145334 4108.168817 3918.4749 4252.666813 4710.911622 0.776191449 0.856806155 0.850224842 0.867881502 0.805253007 0.812824702 0.872053892 0.831786969 0.902726936 1 12.20179055 -9.420141192 1.084017359 1.002442124 0.830970113 0.531171818 0.040347126 0.180215234 0.37008344 0.024005358 0.005715159 3.80E-10 9.420141192 -0.171472011 T(ph)MSSDDEDCSAK ddPTM_HeLa_CUDC101_4h_R1 1 TMSSDDEDCSAK 12 0 H0YBW3;Q9NVR2 H0YBW3 INTS10 Integrator complex subunit 10 1 0 T(0.796)MS(0.128)S(0.076)DDEDCSAK 187.62 3.69E-10 64761000 1560.5 1283.2 1656.2 1550.8 1631.2 1394.4 1293.9 1301.7 1813.8 1724 TRUE FALSE FALSE 1377.580556 1322.733871 1745.739182 1614.048327 1510.869626 1367.804143 1343.806156 1449.880266 1739.034396 1713.745571 0.803841935 0.771837951 1.018668822 0.941824944 0.881618398 0.79813723 0.784133992 0.846030059 1.014756464 1 10.74293722 -9.419980201 1.12722758 1.000681425 0.853213403 0.402917836 0.073219349 0.479244509 1.081408287 0.055670752 0.013789044 3.80E-10 9.419980201 -0.147468022 SLSSPPSSK(ac)RPK ddPTM_HeLa_CUDC101_4h_R1 2 SLSSPPSSKRPK 12 2 Q5VW31;O00712;O00712-4;A0A1B0GW37;U3KQE8;A0A0A0MRX8;A0A1B0GU97;A0A2R8Y7V8;Q5VW30;Q5VW27;A0A1B0GWI9;A0A1B0GWJ4;A0A1B0GWB8;A0A1B0GVN4;Q5VW26;O00712-5;O00712-6 Q5VW31 NFIB Nuclear factor 1 B-type;Nuclear factor 1 0 1 ; SLSSPPSSK(1)RPK;SLSSPPSSK(1)RPK 128.57 0.0011641 8589800 827.27 1085.03 1855.28 3234.5 3997.1 4073.7 4031 3728.3 619.06 392.19 FALSE TRUE FALSE 730.2986647 1118.458488 1955.582049 3366.416891 3702.241896 3996.00096 4186.47702 4152.714602 593.5420848 389.8572364 1.8732464 2.868892465 5.016149159 8.634999113 9.496404197 10.24990839 10.7384874 10.65188539 1.522460094 1 8.606802104 -6.399481091 1.078911738 1.320174298 10.65195341 0.996204856 0.241559778 0.022250852 0.051470332 0.053401875 0.10113313 3.99E-07 6.399481091 9.331779113 up NLQAPSK(ac)LTNSSSTGTVGK ddPTM_HeLa_CUDC101_4h_R1 1 NLQAPSKLTNSSSTGTVGK 19 1 Q6ZU65 Q6ZU65 UBN2 Ubinuclein-2 0 1 NLQAPSK(1)LTNSSSTGTVGK 384.32 2.22E-284 7774500 328.57 453.58 851.25 849.23 1236.3 1088.9 1034.9 1434.2 350.1 409.26 FALSE TRUE FALSE 290.0555227 467.5542622 897.2711499 883.8652701 1145.100612 1068.131047 1074.81644 1597.463531 335.6687298 406.8257033 0.71297246 1.149274145 2.205541937 2.172589546 2.814720414 2.62552498 2.641958045 3.926653399 0.825092237 1 8.668267022 -6.355789434 0.919137893 0.839155355 3.071113566 0.861546992 0.37230141 0.135999093 0.228165351 0.070038122 0.1446299 4.41E-07 6.355789434 2.231958212 up SPAVATSTAAPPPPS(ph)SPLPSK ddPTM_HeLa_CUDC101_4h_R1 3 SPAVATSTAAPPPPSSPLPSK 21 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 SPAVATSTAAPPPPS(0.901)S(0.099)PLPSK;SPAVATSTAAPPPPS(0.636)S(0.364)PLPSK;SPAVATSTAAPPPPS(0.629)S(0.369)PLPS(0.002)K ;; 309.09 1.09E-146 782380000 9548.8 8693.3 7718.06 7411.09 8786 7044.27 7487.55 8150.63 7325.13 7334.61 TRUE FALSE FALSE 8429.504139 8961.130269 8135.321669 7713.346284 8137.874284 6909.912286 7776.347312 9078.464773 7023.185041 7290.983414 1.156154617 1.229070176 1.115805812 1.057929479 1.116155918 0.947733919 1.06657043 1.245163273 0.963269924 1 12.8318977 -9.419461245 1.202782991 1.001286225 1.115071071 0.29342035 0.081981537 0.596126731 1.569102424 0.054561204 0.014420667 3.81E-10 9.419461245 0.113784845 CQEVISWLDANTLAEKDEFEHK ddPTM_HeLa_CUDC101_4h_R1 2 CQEVISWLDANTLAEKDEFEHK 22 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 111.45 8.24E-06 68487000 6982.1 6288.6 6460.8 6551.5 7141 6243.2 6136.5 6629.6 7038.2 4284.2 FALSE FALSE TRUE 6163.668822 6482.344312 6810.090391 6818.698488 6614.222657 6124.121362 6373.186861 7384.286866 6748.082417 4258.717388 1.447306374 1.522135357 1.599094227 1.601115516 1.553102039 1.438020137 1.496503825 1.733922727 1.584533981 1 12.05620328 -8.809650331 0.502068225 0.939627388 1.575397881 0 0.194479798 0.280635907 0.124354265 0.084244689 0.022502463 1.55E-09 8.809650331 0.635770494 NSITEIS(ph)DNEDDLLEYHR ddPTM_HeLa_CUDC101_4h_R1 2 NSITEISDNEDDLLEYHR 18 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 NSIT(0.001)EIS(0.999)DNEDDLLEYHR;NSITEIS(1)DNEDDLLEYHR ; 217.18 4.36E-25 14518900 5553.3 6009.1 4899.6 4951.8 6314.9 6445.5 5162.8 3684.8 6895.6 7047.2 TRUE FALSE FALSE 4902.350592 6194.233248 5164.487196 5153.755808 5849.062408 6322.562826 5361.930925 4104.262738 6611.360449 7005.282941 0.69980765 0.884223136 0.737227495 0.735695596 0.834950202 0.902542107 0.765412471 0.58588108 0.943767797 1 12.77422761 -9.419277103 1.026976556 1.006541469 0.769901623 0.454952214 0.088548243 0.388501607 0.699525805 0.069910939 0.015776515 3.81E-10 9.419277103 -0.236639846 RPGTQGHLGPEKEEEESDGEPEDS(ph)STS ddPTM_HeLa_CUDC101_4h_R1 2 RPGTQGHLGPEKEEEESDGEPEDSSTS 27 2 H7C1Q8;Q8IYB7 H7C1Q8 DIS3L2 DIS3-like exonuclease 2 1 0 RPGTQGHLGPEKEEEES(0.113)DGEPEDS(0.338)S(0.338)T(0.113)S(0.098);RPGTQGHLGPEKEEEES(0.121)DGEPEDS(0.377)S(0.377)T(0.066)S(0.059) ; 54.363 0.0092999 96932000 4234.01 3799.45 3821.46 3690.14 4453.32 3731.8 3770.34 4023.8 4157.7 4555.66 TRUE FALSE FALSE 3737.705766 3916.506551 4028.059687 3840.639859 4124.807456 3660.622133 3915.763277 4481.853127 3986.317846 4528.562732 0.82536248 0.864845379 0.889478611 0.848092449 0.910842512 0.808340825 0.864681249 0.989685556 0.880261152 1 12.14483753 -9.419073652 1.11389233 1.000952276 0.868926972 0.01741089 0.059812371 0.322969725 0.708518517 0.033434494 0.008194254 3.81E-10 9.419073652 -0.132025304 CRDDSFFGETSHNYHK ddPTM_HeLa_CUDC101_4h_R1 2 CRDDSFFGETSHNYHK 16 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991;H0Y8T4 D6REM6 MATR3 Matrin-3 0 0 ; ; 119.17 0.00020663 17272100 9300 5764.7 6154.2 5097.3 8956.8 7227.2 7287.8 6555.1 8468.6 8990.6 FALSE FALSE TRUE 8209.868098 5942.303574 6486.914667 5305.189926 8296.074708 7089.353201 7568.892887 7301.306087 8119.520724 8937.123511 0.918625337 0.664901136 0.72583921 0.59361269 0.928271238 0.793247759 0.84690481 0.816963767 0.908516114 1 13.12559485 -7.446038492 4.876493125 0.965288552 0.769234038 0.439084001 0.090898896 0.13872904 5.750190368 0.016258672 0.018293338 3.58E-08 7.446038492 -0.196054514 CREMDEQIR ddPTM_HeLa_CUDC101_4h_R1 2 CREMDEQIR 9 1 J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753-2;A0A087WWU8;P06753-3;P06753-6 J3KN67;P06753-2 TPM3 Tropomyosin alpha-3 chain 0 0 ; ; 108.74 0.013291 34221000 3152.8 2940.7 2787.7 2912.7 3627.1 2632.7 2829.6 3395.6 2850.2 1400.52 FALSE FALSE TRUE 2783.233563 3031.299481 2938.411494 3031.492496 3359.536059 2582.485634 2938.73862 3782.141379 2732.71355 1392.189645 1.999177033 2.177361032 2.110640246 2.177499673 2.41313105 1.854981212 2.110875218 2.716685469 1.962888864 1 10.44314003 -9.116673388 0.398447003 0.661444502 2.283151591 0.247962905 0.364517728 0.609375146 0.138369727 0.419837866 0.074488616 7.64E-10 9.116673388 1.621707088 EEDGADAS(ph)EEDLTR ddPTM_HeLa_CUDC101_4h_R1 2 EEDGADASEEDLTR 14 0 Q86X53;E5RHA3 Q86X53 ERICH1 Glutamate-rich protein 1 1 0 EEDGADAS(1)EEDLTR;EEDGADAS(1)EEDLTR ; 254.94 7.19E-57 95688000 7411.6 5719 5260.2 5324.4 4759.8 4517.8 4532.7 5497.4 5011.6 2191.73 TRUE FALSE FALSE 6542.823483 5895.195611 5544.582323 5541.552046 4408.679037 4431.630492 4707.527757 6123.201795 4805.019727 2178.693492 3.003094977 2.705839822 2.544911591 2.543520722 2.023542574 2.034077078 2.16071135 2.810492534 2.205459255 1 11.08924753 -9.419057058 1.133193551 0.995527724 2.497062174 0.225661251 0.474228421 0.216124178 0.494059091 0.255979341 0.063826604 3.81E-10 9.419057058 1.501534449 LGLPLLTDCAQPSRPHGS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 LGLPLLTDCAQPSRPHGSPSR 21 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 1 0 LGLPLLTDCAQPS(0.003)RPHGS(0.896)PS(0.1)R 69.07 0.0028724 72007000 883.3 803.87 773.41 569.83 1143.8 834.72 851.66 718.28 623.41 432.29 TRUE FALSE FALSE 779.760913 828.6362819 815.222884 593.0701304 1059.424153 818.7991067 884.5088115 800.0460918 597.7127759 429.7187199 1.814584464 1.928322513 1.897108146 1.380135663 2.465389809 1.905430387 2.058343681 1.861790178 1.390939581 1 8.747248816 -9.418620986 0.364133222 0.603559874 2.004296568 0.506840792 0.274262528 1.309193023 0.208262355 0.741626496 0.094618982 3.81E-10 9.418620986 1.400736694 NQGIEGS(ph)PGGR ddPTM_HeLa_CUDC101_4h_R1 1 NQGIEGSPGGR 11 0 Q6ZUT6-4;Q6ZUT6;H0YM82;Q6ZUT6-3 Q6ZUT6-4 C15orf52 Uncharacterized protein C15orf52 1 0 NQGIEGS(1)PGGR 92.781 0.021026 20026000 1179.8 1075.5 1162.3 1382.4 1205.2 1045.5 1067.7 915.31 1403.6 1427 TRUE FALSE FALSE 1041.505632 1108.63488 1225.137454 1438.780247 1116.294797 1025.558829 1108.881547 1019.505191 1345.743014 1418.512141 0.734223982 0.781547685 0.863677806 1.014288286 0.786947651 0.72298206 0.781721576 0.718714462 0.948700385 1 10.47016278 -9.418611975 1.091768033 1.002470211 0.799375313 0.405669661 0.083513135 0.4145344 0.86663243 0.06552576 0.015749218 3.81E-10 9.418611975 -0.203094898 FIPCS(ph)PFSDYVYK ddPTM_HeLa_CUDC101_4h_R1 1 FIPCSPFSDYVYK 13 0 Q14195-2;Q14195 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 FIPCS(0.998)PFS(0.002)DYVYK 154.1 1.94E-07 0 1821.4 1249.5 1211.7 1368.9 1225.2 1462.8 1112.7 1136.1 1247.5 528.11 TRUE FALSE FALSE 1607.898253 1287.995614 1277.208167 1424.729659 1134.819437 1434.899527 1155.617212 1265.429032 1196.077522 524.9687782 3.062845487 2.453470887 2.432922147 2.713932176 2.161689388 2.733304506 2.201306553 2.410484364 2.278378394 1 9.036087813 -9.417724165 1.100313558 0.984438928 2.554346475 0.217502948 0.459108461 0.168716704 0.359554708 0.206647894 0.050126762 3.82E-10 9.417724165 1.569907548 VPASETS(ph)PGPPPMGPPPPSSK ddPTM_HeLa_CUDC101_4h_R1 1 VPASETSPGPPPMGPPPPSSK 21 0 Q9HD15 Q9HD15 SRA1 Steroid receptor RNA activator 1 1 0 VPAS(0.017)ET(0.117)S(0.866)PGPPPMGPPPPSSK 108.71 6.05E-05 16175000 4633.5 4591.1 4264.8 4313.9 5183.2 4384.9 4245.9 3741.9 4636.6 5531.4 TRUE FALSE FALSE 4090.368154 4732.546349 4495.367988 4489.839488 4800.845662 4301.265338 4409.665785 4167.862771 4445.477386 5498.498987 0.743906321 0.860697867 0.817562757 0.8165573 0.873119314 0.782261732 0.801976284 0.758000098 0.808489262 1 12.42482212 -9.417439795 1.05311318 1.004157094 0.804773432 0 0.069429597 0.205861823 0.394509752 0.031498971 0.007312583 3.82E-10 9.417439795 -0.199383662 MAPTPIPTRS(ph)PSDSSTASTPVAEQIER ddPTM_HeLa_CUDC101_4h_R1 6 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643-3;Q16643;Q16643-2;D6R9Q9 Q16643-3 DBN1 Drebrin 1 0 MAPT(0.002)PIPT(0.294)RS(0.684)PS(0.018)DS(0.001)STASTPVAEQIER;MAPTPIPT(0.066)RS(0.921)PS(0.011)DS(0.001)STASTPVAEQIER;MAPT(0.001)PIPT(0.076)RS(0.799)PS(0.115)DS(0.005)S(0.002)T(0.002)AS(0.001)T(0.001)PVAEQIER;MAPTPIPT(0.084)RS(0.91)PS(0.006)DSSTASTPVAEQIER;MAPT(0.001)PIPT(0.166)RS(0.785)PS(0.037)DS(0.006)S(0.002)T(0.003)AST(0.001)PVAEQIER;MAPT(0.001)PIPT(0.132)RS(0.775)PS(0.083)DS(0.006)S(0.002)T(0.001)ASTPVAEQIER ;;;;; 140.67 1.92E-11 3167892000 7643.7 6970.8 6574.99 6688.71 7964.98 7308.74 6416.81 6225.26 7085.36 7777.41 TRUE FALSE FALSE 6747.717073 7185.562086 6930.453848 6961.504505 7377.419294 7169.337962 6664.308511 6933.918435 6793.298462 7731.149619 0.872796079 0.929429961 0.896432509 0.900448814 0.95424609 0.927331421 0.862007443 0.896880642 0.878691889 1 12.91646724 -9.41734586 1.069266903 1.00166748 0.903421113 0 0.045074862 0.272237467 0.541428057 0.020644508 0.004867896 3.83E-10 9.41734586 -0.098246366 AQPSMS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 AQPSMSPK 8 0 Q969S3 Q969S3 ZNF622 Zinc finger protein 622 1 0 AQPS(0.443)MS(0.557)PK;AQPS(0.003)MS(0.997)PK ; 119.03 0.0076449 54636000 15130.9 12099.3 9636.6 14002.3 11838.7 10715.6 10602 8635 6951.2 6939.4 TRUE FALSE FALSE 13357.27884 12472.06509 10157.58375 14573.37432 10965.38269 10511.21778 11010.92269 9617.973496 6664.668594 6898.12414 1.93636394 1.808037205 1.472513909 2.112657589 1.589618056 1.523779156 1.596219852 1.394288259 0.966156662 1 12.75198838 -9.417305273 1.1248027 0.996910893 1.701902153 0.630989181 0.211258449 0.275850736 0.619903693 0.152877419 0.037935603 3.83E-10 9.417305273 0.70499126 AEAPAGPALGLPS(ph)PEAESGVDRGEPEPMEVEEGELEIVPVRR ddPTM_HeLa_CUDC101_4h_R1 2 AEAPAGPALGLPSPEAESGVDRGEPEPMEVEEGELEIVPVRR 42 2 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 0 AEAPAGPALGLPS(0.803)PEAES(0.197)GVDRGEPEPMEVEEGELEIVPVRR;AEAPAGPALGLPS(0.5)PEAES(0.5)GVDRGEPEPMEVEEGELEIVPVRR ; 81.876 6.31E-12 166395000 1417.39 1101.62 1016.18 1077.28 1269.9 1306.36 1132.4 870.25 1173.95 875.45 TRUE FALSE FALSE 1251.245693 1135.559606 1071.117765 1121.216135 1176.222007 1281.44336 1176.077047 969.3157423 1125.559284 870.2427845 1.4378122 1.304876785 1.230826367 1.288394635 1.351602137 1.472512479 1.351435563 1.113845193 1.293385368 1 9.765274137 -9.416966649 1.080089187 0.99515885 1.331667271 0.061311988 0.130451002 0.285205466 0.581341645 0.074345578 0.017720001 3.83E-10 9.416966649 0.336508421 KCEDPDS(ph)PVTK ddPTM_HeLa_CUDC101_4h_R1 1 KCEDPDSPVTK 11 1 Q9BUB4-2;Q9BUB4 Q9BUB4-2 ADAT1 tRNA-specific adenosine deaminase 1 1 0 KCEDPDS(1)PVTK 131.32 0.0038437 11109000 3376.7 2834.4 2598.7 2426.5 2668.1 3042.7 2557.7 1828.7 2946 1885.6 TRUE FALSE FALSE 2980.888345 2921.724504 2739.193583 2525.463158 2471.279579 2984.665567 2656.351346 2036.871816 2824.564633 1874.384367 1.590329282 1.55876487 1.461383071 1.347356072 1.318448671 1.592344462 1.417186033 1.086688436 1.506929252 1 10.87220111 -9.416929529 1.142548308 0.999801441 1.440945972 0 0.211075828 0.297270882 0.693594665 0.103623467 0.026132785 3.83E-10 9.416929529 0.441144532 GSLPDTQPSQGPS(ph)TPKGER ddPTM_HeLa_CUDC101_4h_R1 1 GSLPDTQPSQGPSTPKGER 19 1 A0A494BYR6;Q86Y91-6;Q86Y91 A0A494BYR6 KIF18B Kinesin-like protein KIF18B 1 0 GSLPDTQPS(0.02)QGPS(0.49)T(0.49)PKGER 72.676 0.0066712 7528100 2111.1 1938.2 2204.8 2188.4 2341.5 2315.2 2123.3 1196.9 2761 2708.7 TRUE FALSE FALSE 1863.640058 1997.913645 2323.998157 2277.652411 2168.77221 2271.041417 2205.196392 1333.150258 2647.190411 2692.588532 0.692136966 0.742004811 0.863109283 0.845896944 0.805459945 0.843441688 0.818987516 0.495118449 0.9831396 1 11.39477807 -9.416443253 1.09716313 1.002435763 0.767598197 0.438710716 0.103013335 0.407363679 0.862611968 0.074513999 0.018057517 3.83E-10 9.416443253 -0.234837566 AAVVVSK(ac)SGSLK ddPTM_HeLa_CUDC101_4h_R1 2 AAVVVSKSGSLK 12 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ; AAVVVSK(1)SGSLK;AAVVVSK(1)SGSLK 221.32 2.49E-22 1876700 1052.37 1450.45 1624.96 2402.3 2956.3 3225.5 2953.1 3200.8 795.49 529.61 FALSE TRUE FALSE 929.0127839 1495.136645 1712.810253 2500.276178 2738.219639 3163.978962 3067.002056 3565.166134 762.6995655 526.4598562 1.76464126 2.839982247 3.253448924 4.749224748 5.201193608 6.009914953 5.825709255 6.771961988 1.448732618 1 9.040179716 -6.314713971 0.597709593 1.136891722 6.64708623 0.98411153 0.250013205 0.058750371 0.04082091 0.0554421 0.143531767 4.84E-07 6.314713971 5.510194508 up RALLETAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 RALLETASPR 10 1 Q96BT3;H3BMP6;H3BQS6;H3BN05;H3BTS2;H3BQJ0;I3L4F8;H3BUW2;H3BTR4;Q96BT3-3;Q96BT3-2 Q96BT3 CENPT Centromere protein T 1 0 RALLETAS(1)PR;RALLET(0.014)AS(0.986)PR;RALLET(0.048)AS(0.952)PR ;; 113.52 0.0037628 27409500 10916.6 9447.6 7829.4 9439.2 9707.2 8972.5 8396.1 7382.2 9589.9 7482.4 TRUE FALSE FALSE 9636.972696 9738.669358 8252.681047 9824.171376 8991.119195 8801.364512 8719.940389 8222.559808 9194.600263 7437.894352 1.295658723 1.309331499 1.109545344 1.320826959 1.208825881 1.183313999 1.172366799 1.105495644 1.23618323 1 12.86067854 -9.416300839 1.143390562 0.999969991 1.22091225 0 0.10197185 0.295778426 0.6914903 0.05163487 0.013043466 3.83E-10 9.416300839 0.220942258 SQAAPGSS(ph)PCR ddPTM_HeLa_CUDC101_4h_R1 3 SQAAPGSSPCR 11 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 SQAAPGS(0.22)S(0.78)PCR;SQAAPGS(0.197)S(0.803)PCR;SQAAPGS(0.125)S(0.875)PCR ;; 110.51 0.0068467 219601300 10603 7999.7 9007.4 8643.3 8979.8 8823.6 8533.5 5339.35 9268.4 6371.08 TRUE FALSE FALSE 9360.132413 8246.161275 9494.36729 8995.811134 8317.378044 8655.304531 8862.639954 5947.160022 8886.352629 6333.184533 1.477950368 1.302056056 1.499145847 1.420424604 1.313301073 1.366659141 1.399397082 0.939047329 1.403141276 1 12.6287154 -9.41620832 1.111202098 0.997447472 1.359511678 0 0.192541153 0.362696904 0.791972949 0.102740035 0.025226774 3.84E-10 9.41620832 0.362064206 LALEDSENTASTNCDS(ph)SSEGLEKDTATQR ddPTM_HeLa_CUDC101_4h_R1 1 LALEDSENTASTNCDSSSEGLEKDTATQR 29 1 Q49AR2 Q49AR2 C5orf22 UPF0489 protein C5orf22 1 0 LALEDSENT(0.004)AS(0.047)T(0.047)NCDS(0.62)S(0.141)S(0.141)EGLEKDTATQR 86.604 4.05E-07 6204500 544.86 413.58 371.96 427.74 525.17 378.84 406.68 457.97 381.86 319.5 TRUE FALSE FALSE 480.9923368 426.3219096 392.0692827 445.1850861 486.4292554 371.6142582 422.3657838 510.1034536 366.1195692 317.5995998 1.514461407 1.342325084 1.234476627 1.401718032 1.53158019 1.170071557 1.329868753 1.60612121 1.152770877 1 8.311065284 -9.415888627 1.064558244 0.992922959 1.391486147 0.456135569 0.134208355 0.315887558 0.62192952 0.096951982 0.022809221 3.84E-10 9.415888627 0.398563188 RKAS(ph)PEPEGEAAGK ddPTM_HeLa_CUDC101_4h_R1 3 RKASPEPEGEAAGK 14 2 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 RKAS(1)PEPEGEAAGK;RKAS(1)PEPEGEAAGK;RKAS(1)PEPEGEAAGK ;; 85.576 0.016186 101100700 17020.9 12563.7 18720.5 18670 16609.3 14360.5 16511.3 11870.2 17442.1 18592.3 TRUE FALSE FALSE 15025.7359 12950.77271 19732.58686 19431.4433 15384.06503 14086.59739 17148.14637 13221.45559 16723.12926 18481.71217 0.813005622 0.700734466 1.067681753 1.051387616 0.83239393 0.762191146 0.927844034 0.715380451 0.904847403 1 14.1738108 -9.415770151 1.165441991 0.999376644 0.860776916 0.065756608 0.122914567 0.746404171 1.826326788 0.08223456 0.021186585 3.84E-10 9.415770151 -0.138599728 GDVEGSQS(ph)QDEGEGSGESER ddPTM_HeLa_CUDC101_4h_R1 2 GDVEGSQSQDEGEGSGESER 20 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 GDVEGSQS(1)QDEGEGSGESER;GDVEGSQS(1)QDEGEGSGESER ; 287.48 1.05E-104 15346500 1599.08 1129.26 1630.12 1502.32 1353.3 1675.38 1537.57 1255.65 1458.94 1634.47 TRUE FALSE FALSE 1411.638266 1164.051162 1718.249218 1563.591103 1253.469755 1643.424918 1596.87459 1398.58812 1398.801876 1624.7481 0.868835155 0.716450238 1.057548071 0.96235909 0.771485595 1.011495208 0.982844412 0.86080305 0.860934613 1 10.66600035 -9.41516414 1.22600078 0.998407353 0.903433772 0 0.108859965 0.814078477 2.243859517 0.062410007 0.01690803 3.84E-10 9.41516414 -0.09497358 SRWDETPASQMGGST(ph)PVLTPGK ddPTM_HeLa_CUDC101_4h_R1 1 SRWDETPASQMGGSTPVLTPGK 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 SRWDETPASQMGGS(0.02)T(0.98)PVLT(0.001)PGK 132.39 3.00E-07 19475000 8258.5 7116.2 5873.2 6469.5 6683 6367 6562.7 5855.2 5915.6 4981.7 TRUE FALSE FALSE 7290.451149 7335.441687 6190.722957 6733.354174 6190.008404 6245.560083 6815.825537 6521.7323 5671.756464 4952.068627 1.472203174 1.481288375 1.250128668 1.359705344 1.249984374 1.261202248 1.376359265 1.316971309 1.145330748 1 12.27381559 -9.414534529 1.138591611 0.999735866 1.353606946 0.585762503 0.089150386 0.222066994 0.514331117 0.061949138 0.015624391 3.85E-10 9.414534529 0.35387108 AFS(ph)SPQEEEEAGFTGR ddPTM_HeLa_CUDC101_4h_R1 1 AFSSPQEEEEAGFTGR 16 0 A0A024RAC6;Q14241 A0A024RAC6 TCEB3 Transcription elongation factor B polypeptide 3 1 0 AFS(0.5)S(0.5)PQEEEEAGFTGR 172.42 5.86E-07 17943000 1408.7 1486.8 1622.4 1401.9 1638.4 1544.5 1397.4 866.26 1503.7 2051.7 TRUE FALSE FALSE 1243.574321 1532.606546 1710.111851 1459.075542 1517.538496 1515.041236 1451.298186 964.8715369 1441.71685 2039.496397 0.60974578 0.751463228 0.838497118 0.715409718 0.744075105 0.742850656 0.711596347 0.473093033 0.706898454 1 10.99399724 -9.41438067 1.034406417 1.007582671 0.700402286 0.013714776 0.128354237 0.317920592 0.583951823 0.074319896 0.017021492 3.85E-10 9.41438067 -0.307180385 RNTIDSTS(ph)SFSQFR ddPTM_HeLa_CUDC101_4h_R1 1 RNTIDSTSSFSQFR 14 1 Q8TDN4;Q8TDN4-2;Q8TDN4-4 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 RNT(0.088)IDS(0.008)T(0.018)S(0.443)S(0.443)FS(0.001)QFR 130.66 0.0016743 13811000 1640 1469.5 1025.5 1459.7 1484 1526.9 1091.3 1040.2 1308.7 1074.4 TRUE FALSE FALSE 1447.761686 1514.773553 1080.941632 1519.232875 1374.528277 1497.776926 1133.391807 1158.612163 1254.754832 1068.009421 1.355570145 1.418314786 1.012108705 1.422490144 1.287000142 1.402400482 1.061218922 1.08483328 1.174853711 1 10.06070866 -9.414181795 1.144489188 1.000154244 1.266023729 0.120751846 0.155092877 0.476013451 1.116296746 0.099924311 0.02534515 3.85E-10 9.414181795 0.265869485 IDSVAAQPT(ph)ATSPVVYTR ddPTM_HeLa_CUDC101_4h_R1 1 IDSVAAQPTATSPVVYTR 18 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 IDSVAAQPT(0.593)AT(0.158)S(0.249)PVVYTR 156.67 0.00018682 14778000 3781.3 3062.8 2720.5 3073.4 2988.6 2862.3 2436.9 1635 3768.1 4320.8 TRUE FALSE FALSE 3338.061746 3157.161238 2867.578459 3198.746536 2768.136932 2807.706396 2530.892049 1821.121791 3612.777323 4295.099689 0.777179108 0.735061225 0.667639558 0.744743258 0.644487237 0.653699937 0.589251061 0.423999889 0.841139341 1 12.0684759 -6.31327953 0.092714365 1.393776384 1.26E-12 0.793155567 0.066411323 4.272672831 0.172779771 1.000060377 1.542621955 4.86E-07 6.31327953 -1.393776384 LTSPVTS(ph)ISPIQASEK ddPTM_HeLa_CUDC101_4h_R1 1 LTSPVTSISPIQASEK 16 0 E9PMC9;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7 E9PMC9 C11orf30;EMSY Protein EMSY 1 0 LTSPVT(0.058)S(0.796)IS(0.145)PIQASEK 107.13 0.0021323 15916000 1317.2 1169.6 1087.5 1384.6 1193.4 1231.7 942.5 1068.4 1472.4 1718.5 TRUE FALSE FALSE 1162.799813 1205.63399 1146.29354 1441.069973 1105.36526 1208.207375 978.8525407 1190.022337 1411.707049 1708.278286 0.680685239 0.705759711 0.671022719 0.843580338 0.647063929 0.707266132 0.573005317 0.696620889 0.826391731 1 10.7383273 -9.413956311 0.529203038 1.079980495 0.680191266 0.481173005 0.083530255 0.575816477 0.203556289 0.120388168 0.015729553 3.86E-10 9.413956311 -0.399789228 LIPITGGNARS(ph)PEDQLGK ddPTM_HeLa_CUDC101_4h_R1 3 LIPITGGNARSPEDQLGK 18 1 Q9UK61-3;Q9UK61;Q9UK61-2 Q9UK61-3 FAM208A Protein FAM208A 1 0 LIPIT(0.014)GGNARS(0.986)PEDQLGK;LIPITGGNARS(1)PEDQLGK;LIPIT(0.066)GGNARS(0.934)PEDQLGK ;; 151.03 0.00030237 133025000 3423.39 3045.76 2888.7 2709.26 3621.37 2893 2887 3344.44 2963.87 3334.68 TRUE FALSE FALSE 3022.105414 3139.596255 3044.87186 2819.755333 3354.22875 2837.820845 2998.352557 3725.157531 2841.698024 3314.845175 0.911688255 0.947132095 0.918556282 0.850644656 1.01188097 0.856094537 0.904522655 1.123780247 0.857264178 1 11.69472577 -9.413664243 1.106197558 1.000506436 0.933390854 0 0.087425995 0.961394969 2.078746778 0.050340332 0.012351544 3.86E-10 9.413664243 -0.067115583 LNDGHFMPVLGFGTYAPAEVPKS(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 LNDGHFMPVLGFGTYAPAEVPKSK 24 1 B4DK69;P52895;S4R3P0;P52895-2;Q04828 B4DK69;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 1 0 LNDGHFMPVLGFGTYAPAEVPKS(1)K;LNDGHFMPVLGFGT(0.041)Y(0.039)APAEVPKS(0.92)K ; 69.576 0.00037743 28730000 2829.6 3103.5 3054.21 3209.7 3799 3010.8 2496.8 2584.91 3278.4 4634.1 TRUE FALSE FALSE 2497.918577 3199.115156 3219.329831 3340.60544 3518.755339 2953.374006 2593.102412 2879.165706 3143.262964 4606.536167 0.542255284 0.694473036 0.698861295 0.72518815 0.763861438 0.641126847 0.562918062 0.625017497 0.682348483 1 12.16946662 -9.413308705 1.069741181 1.005629865 0.651544796 0.086866733 0.116019567 0.210105838 0.419036669 0.057326919 0.01360622 3.86E-10 9.413308705 -0.354085069 CTSNPCANGGQCLNRGPSRMCR ddPTM_HeLa_CUDC101_4h_R1 1 CTSNPCANGGQCLNRGPSRMCR 22 2 Q9NR61 Q9NR61 DLL4 Delta-like protein 4 0 0 7.6218 0.035781 1039300 850.46 895.24 796.97 1070.5 1169.8 924.93 1070.8 722.74 1006.7 360.16 FALSE FALSE TRUE 750.770368 922.8212833 840.0566089 1114.159617 1083.506185 907.2885013 1112.101115 805.0138002 965.2033999 358.0177523 2.097019947 2.577585266 2.346410488 3.112023384 3.026403517 2.534199758 3.106273663 2.248530401 2.695965196 1 8.483887315 -8.156737412 0.502723281 0.978123961 2.841030169 0.041279744 0.584009082 0.22813403 0.13278012 0.180488438 0.09489417 6.97E-09 8.156737412 1.862906208 CTYLVLDEADR ddPTM_HeLa_CUDC101_4h_R1 2 CTYLVLDEADR 11 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 0 ; ; 151.22 0.0031809 21475000 2460.6 2198.97 1936.65 2026.41 2109.33 2283.29 1852.44 1825.11 2160.08 817.82 FALSE FALSE TRUE 2172.172198 2266.717659 2041.351157 2109.055759 1953.728928 2239.740047 1923.889231 2032.873145 2071.040588 812.9555703 2.671944541 2.788242977 2.511024257 2.594306301 2.403241948 2.755058369 2.366536748 2.500595628 2.547544619 1 9.667032698 -9.18352417 0.780749626 0.925839873 2.581320041 0 0.491182895 0.126957515 0.130286533 0.130539433 0.031354694 6.55E-10 9.18352417 1.655480168 MQRRGALFGMPGGS(ph)GGRK ddPTM_HeLa_CUDC101_4h_R1 2 MQRRGALFGMPGGSGGRK 18 3 Q92995 Q92995 USP13 Ubiquitin carboxyl-terminal hydrolase 13 1 0 MQRRGALFGMPGGS(1)GGRK;MQRRGALFGMPGGS(1)GGRK ; 51.265 0.02905 266070000 13112.8 10665.9 10065.8 10314.3 10501.8 10375.6 9457.6 9362.4 10609.5 7562.1 TRUE FALSE FALSE 11575.73746 10994.50374 10609.9876 10734.96174 9727.103137 10177.70272 9822.3828 10428.17777 10172.17192 7517.120293 1.539916485 1.462595157 1.411443103 1.428068372 1.293993279 1.353936391 1.306668301 1.387257003 1.35320063 1 12.87596438 -9.413189732 1.124186563 0.99857151 1.405863333 0.150451578 0.126178833 0.18528589 0.416507316 0.059195167 0.014770969 3.86E-10 9.413189732 0.407291822 CVINLREQFK ddPTM_HeLa_CUDC101_4h_R1 2 CVINLREQFK 10 1 O00763-3;O00763 O00763-3 ACACB Acetyl-CoA carboxylase 2;Biotin carboxylase 0 0 ; ; 94.309 0.027902 13660400 6766.3 12599.7 8919.8 14279.4 19769.1 18719.1 16193.2 10061.6 15894.9 14698.2 FALSE FALSE TRUE 5973.164571 12987.88182 9402.031369 14861.77565 18310.77288 18362.06436 16817.77715 11206.97187 15239.70549 14610.77445 0.408819162 0.888924941 0.643499864 1.017179185 1.253237666 1.256748191 1.151053095 0.76703476 1.043045702 1 13.83474503 -6.128062891 4.38648463 0.724168851 1.122381543 0.286510293 0.217933091 0.197964541 6.192947659 0.038507783 0.065305054 7.45E-07 6.128062891 0.398212692 CVMDDDNEVRDR ddPTM_HeLa_CUDC101_4h_R1 2 CVMDDDNEVRDR 12 1 Q9Y678 Q9Y678 COPG1 Coatomer subunit gamma-1 0 0 ; ; 133.89 0.0017654 28049000 3143.5 2473.4 3106.5 2565.71 3268.9 2316.3 2568.4 2605 2876.6 2211.14 FALSE FALSE TRUE 2775.023695 2549.602522 3274.446787 2670.350744 3027.75976 2272.120437 2667.464048 2901.54267 2758.02533 2197.988041 1.262529024 1.159971062 1.489747317 1.214906858 1.37751421 1.033727388 1.213593522 1.32009029 1.254795422 1 11.10196782 -9.121731205 0.732656047 0.98707943 1.259077782 0 0.139953181 0.597778702 0.541661341 0.096468784 0.023636865 7.56E-10 9.121731205 0.271998352 SLS(ph)DSESDDS(ph)KSK ddPTM_HeLa_CUDC101_4h_R1 1 SLSDSESDDSKSK 13 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 S(0.012)LS(0.988)DS(0.001)ES(0.012)DDS(0.969)KS(0.019)K 121.99 0.024901 22719000 7594.7 6417.9 7639.1 8166.9 7993.8 7285.2 6943.9 5619.6 8981.9 8916.9 TRUE FALSE FALSE 6704.460779 6615.627892 8052.092853 8499.981482 7404.1133 7146.246948 7211.728549 6259.312549 8611.66228 8863.861882 0.756381459 0.746359542 0.908418132 0.958947871 0.835314606 0.806222733 0.813610212 0.706160885 0.971547436 1 13.11371969 -9.41314319 1.12032335 1.000818004 0.81663007 0.474389056 0.0711108 0.374818187 0.835662825 0.054087177 0.01345098 3.86E-10 9.41314319 -0.184187934 CYEMASHLR ddPTM_HeLa_CUDC101_4h_R1 2 CYEMASHLR 9 0 P07737;K7EJ44;CON__P02584 P07737 PFN1 Profilin-1 0 0 ; ; 140.11 0.0017097 75891000 22424 14196.9 9323.1 15130.7 14530.3 13503.6 12600.7 11905.8 9512 5903.8 FALSE FALSE TRUE 19795.49271 14634.28966 9827.134987 15747.79535 13458.42872 13246.04133 13086.71322 13261.10815 9119.911334 5868.683935 3.373071873 2.493623753 1.674504045 2.683360617 2.293261806 2.257071854 2.229922989 2.259639179 1.553995996 1 12.5188213 -6.230594118 24.62081891 2.152574776 2.3305568 0.045518415 0.605608999 3776.414179 3014349.558 0.136469565 0.226286793 5.88E-07 6.230594118 0.177982025 DAAGSGDK(ac)PGADTGR ddPTM_HeLa_CUDC101_4h_R1 2 DAAGSGDKPGADTGR 15 1 Q96EL3 Q96EL3 MRPL53 "39S ribosomal protein L53, mitochondrial" 0 1 ; DAAGSGDK(1)PGADTGR;DAAGSGDK(1)PGADTGR 153 0.0012418 1055880 170.83 0 128.66 0 383.4 0 0 144.76 0 291.81 FALSE TRUE FALSE 150.8055664 0 135.6157488 0 355.1173458 0 0 161.2388933 0 290.0743011 0.519885994 0 0.467520729 0 1.224228911 0 0 0.555853768 0 1 8.180278677 -8.458286631 0.723345255 0.973996206 0.322182296 0 0.47472161 0.535167603 0.584919088 0.16859733 0.082015509 3.48E-09 8.458286631 -0.65181391 DAALATALGDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DAALATALGDKK 12 1 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 0 1 ; DAALATALGDK(1)K;DAALATALGDK(1)K 132.32 0.00042884 2868240 4265.58 1809.66 1551.93 1710.56 3251.87 3171.78 3878.33 3291.23 3391.88 2592.75 FALSE TRUE FALSE 3765.575179 1865.41348 1635.83203 1780.32403 3011.986029 3111.283581 4027.918487 3665.89032 3252.065271 2577.328208 1.461038283 0.723778009 0.634700705 0.690763414 1.168646671 1.207173992 1.562827146 1.422360687 1.261797105 1 11.33166055 -4.910681435 3.471994989 1.097955331 1.492870768 0.31070295 0.265754452 0.301998732 7.117450226 0.046554029 0.159504115 1.23E-05 4.910681435 0.394915437 DADAGDEDEESEEPR ddPTM_HeLa_CUDC101_4h_R1 3 DADAGDEDEESEEPR 15 0 Q9NZT2-2;Q9NZT2;A0A087X028 Q9NZT2-2 OGFR Opioid growth factor receptor 0 0 ;; ;; 355 8.03E-218 69443600 5078.75 3969.41 3825.79 4026.18 4699.12 4009.69 4495.25 4049.45 4243.22 4383.76 FALSE FALSE TRUE 4483.426624 4091.702817 4032.62378 4190.385023 4352.47528 3933.211844 4668.633298 4510.42302 4068.312676 4357.685201 1.028855096 0.93896246 0.925405024 0.961608017 0.998804429 0.90259201 1.071356255 1.035050219 0.933594899 1 12.08934626 -7.283417056 24.77570447 1.013626018 0.975426957 0 0.054271715 1175.448088 1325093.43 0.008432689 0.00964758 5.21E-08 7.283417056 -0.038199061 DADDAVYELDGK ddPTM_HeLa_CUDC101_4h_R1 2 DADDAVYELDGK 12 0 B4DJK0;B4DUA4;Q13243;G3V5K8;Q13243-2;Q13243-3 B4DJK0 SRSF5 Serine/arginine-rich splicing factor 5 0 0 ; ; 184.24 6.77E-10 49277000 6755.7 4697.1 4976.3 4828.5 4692.1 4783.6 4745.1 4085.6 5216 5323.8 FALSE FALSE TRUE 5963.807087 4841.812084 5245.33383 5025.427101 4345.973131 4692.3608 4928.120096 4550.688189 5000.994272 5292.133801 1.126919181 0.914907345 0.991156692 0.949603183 0.821213766 0.886667075 0.931216081 0.859896662 0.944986363 1 12.36963382 -6.633227427 1.258473061 1.056718425 0.884862595 0.348314429 0.065224359 0.229578238 0.73041829 0.011739483 0.018816362 2.33E-07 6.633227427 -0.17185583 DADDAVYELNGK ddPTM_HeLa_CUDC101_4h_R1 2 DADDAVYELNGK 12 0 Q13247-3;Q13247;A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80;Q13247-2;Q08170;A0A0D9SEM4 Q13247-3;Q08170 SRSF6;SRSF4 Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 4 0 0 ; ; 207.29 1.48E-22 24835000 6356.1 5219.3 4829.4 4874.8 5006.1 4646.3 4551.5 4352.1 5912.4 6259.9 FALSE FALSE TRUE 5611.047593 5380.100447 5090.491972 5073.615415 4636.809977 4557.679569 4727.05288 4847.525472 5668.68837 6222.665836 0.901711218 0.864597359 0.818056458 0.815344347 0.745148478 0.732431998 0.759650768 0.779011054 0.910974254 1 12.60331706 -7.176254879 0.448892352 0.994610632 0.736340972 0.855748366 0.030937054 0.137788148 0.069254607 0.009937716 0.012603276 6.66E-08 7.176254879 -0.258269659 DADETKEWIEEK ddPTM_HeLa_CUDC101_4h_R1 2 DADETKEWIEEK 12 1 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 108.32 0.0076812 54003000 8250.3 6929.9 8135.1 6479.8 7186.9 5922.9 5600 4503.3 5240 4583.8 FALSE FALSE TRUE 7283.212341 7143.402005 8574.908113 6744.074252 6656.736705 5809.930551 5815.993876 5015.937469 5024.004982 4556.535354 1.598410146 1.567726672 1.88189215 1.480088209 1.460920675 1.275076368 1.276407056 1.100822682 1.102593219 1 12.15372155 -4.422251461 1.570102611 1.380034717 1.056561585 0.137147364 0.240820704 1.798364138 5.205623524 0.044736687 0.806939893 3.78E-05 4.422251461 -0.323473132 DDLQRLQEVLQSES(ph)DQLK ddPTM_HeLa_CUDC101_4h_R1 1 DDLQRLQEVLQSESDQLK 18 1 A0A087X0P0;Q02224-3;Q02224 A0A087X0P0 CENPE Kinesin-like protein;Centromere-associated protein E 1 0 DDLQRLQEVLQS(0.388)ES(0.612)DQLK 55.705 0.030139 6988000 122.45 122.92 137.92 188.87 153.76 166.85 127.06 171.99 129.59 267.82 TRUE FALSE FALSE 108.0965966 126.7070195 145.3763724 196.572935 142.4174311 163.6676142 131.9607468 191.5686464 124.2482453 266.2269947 0.40603169 0.475936032 0.546061727 0.738365901 0.534947372 0.614767163 0.495670046 0.719568827 0.466700402 1 8.056513054 -9.412907724 1.122661626 1.00170116 0.553236291 0 0.189665023 0.212996998 0.477299774 0.074882069 0.018667824 3.86E-10 9.412907724 -0.448464869 QKSDAEEDGGTVS(ph)QEEEDRKPK ddPTM_HeLa_CUDC101_4h_R1 2 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 QKSDAEEDGGT(0.214)VS(0.786)QEEEDRKPK;QKSDAEEDGGT(0.246)VS(0.754)QEEEDRKPK ; 65.954 0.0033336 61648000 4733.24 3982.03 4075.41 4980.41 3872.9 4023.24 4360.23 5392.9 3825.21 5150.2 TRUE FALSE FALSE 4178.416782 4104.711624 4295.738992 5183.532647 3587.203883 3946.5034 4528.405532 6006.805937 3667.533225 5119.566381 0.81616615 0.801769392 0.839082585 1.012494469 0.7006851 0.770866731 0.884529117 1.173303653 0.716375754 1 12.32180591 -9.412681786 1.154909738 0.999564634 0.862644875 0 0.153972412 0.777975225 1.865174486 0.084293472 0.021620976 3.87E-10 9.412681786 -0.136919759 DADVEDEDTEEAK ddPTM_HeLa_CUDC101_4h_R1 2 DADVEDEDTEEAK 13 0 O60306 O60306 AQR Intron-binding protein aquarius 0 0 ; ; 261.75 3.31E-69 36833000 5902.4 3701 3950.3 4501.4 4708.7 4608.5 3945 3786.9 4282.4 4546.4 FALSE FALSE TRUE 5210.529619 3815.023423 4163.865167 4684.986549 4361.348582 4520.600541 4097.159971 4217.985389 4105.877659 4519.357811 1.152935846 0.844151666 0.921340009 1.036648733 0.965037239 1.000274979 0.906580126 0.933315211 0.908509092 1 12.14190207 -7.268039337 24.99336791 1.072219703 0.94815096 0.062042038 0.079277228 407.2145362 1542078.192 0.012667783 0.014663021 5.39E-08 7.268039337 -0.124068743 DAEDAIYGR ddPTM_HeLa_CUDC101_4h_R1 2 DAEDAIYGR 9 0 Q13242;H0YIB4;S4R3G0 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 0 0 ; ; 132.76 0.015699 18518100 6325.6 5721 5650.2 5109.5 5712.3 5626.9 5626.9 4695 6015.9 6158.8 FALSE FALSE TRUE 5584.122757 5897.257229 5955.666903 5317.887495 5290.91501 5519.576258 5843.931418 5229.459822 5767.922056 6122.167184 0.912115365 0.963263017 0.972803702 0.868628271 0.864222562 0.901572285 0.954552733 0.85418442 0.942137299 1 12.57982673 -6.266188016 24.86233991 0.958853177 0.891657133 0.519267409 0.033335154 296.592008 1552862.177 0.006330758 0.0098664 5.42E-07 6.266188016 -0.067196044 DAEDALHNLDR ddPTM_HeLa_CUDC101_4h_R1 2 DAEDALHNLDR 11 0 O75494-6;O75494-3;Q5JRI1;O75494-5;O75494-4;O75494-2;O75494 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 0 0 ; ; 182.92 1.19E-10 32990000 22274 17172.3 14691.9 15255.2 15037.8 16110.5 15208.9 12325.1 16707.5 21159 FALSE FALSE TRUE 19663.07549 17701.35821 15486.18855 15877.37299 13928.49145 15803.21905 15795.51237 13728.13956 16018.80978 21033.14533 0.93486139 0.841593491 0.736275451 0.754873926 0.662216289 0.751348351 0.750981944 0.652690758 0.761598398 1 14.36037699 -7.063545149 1.132014697 0.979301555 0.710415517 0.465761396 0.076862902 0.081392315 0.203318657 0.006907186 0.009013942 8.64E-08 7.063545149 -0.268886038 DAEDAMDAMDGAVLDGR ddPTM_HeLa_CUDC101_4h_R1 10 DAEDAMDAMDGAVLDGR 17 0 J3QL05;J3KP15;Q01130-2;Q01130 J3QL05 SRSF2 Serine/arginine-rich splicing factor 2 0 0 ;;;;;;;;; ;;;;;;;;; 261.02 2.09E-69 443830200 23409.7 21298.3 20531.75 19546.1 24187.7 21610.8 22582.2 22072.5 24269 23769 FALSE FALSE TRUE 20665.65045 21954.47538 21641.75851 20343.27444 22403.42156 21198.61 23453.20302 24585.14418 23268.62155 23627.62093 0.874639496 0.92918688 0.915951656 0.860995464 0.948187785 0.897196127 0.99261805 1.040525589 0.984805945 1 14.52818675 -4.561571406 4.399300778 0.929594314 1.031875029 0.443354917 0.041804322 0.163377958 6.922099652 0.007259578 0.032806432 2.74E-05 4.561571406 0.102280715 DAEDDGEEEDD ddPTM_HeLa_CUDC101_4h_R1 4 DAEDDGEEEDD 11 0 Q5TB25;Q9BTT0-2;Q9BTT0;Q5TB19;Q9BTT0-3;H0YCE2 Q5TB25 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E 0 0 ;;; ;;; 198.07 1.55E-15 319659300 42372.4 28217.3 35673.2 38549 36054.6 32261.8 31717.6 21664.7 39465.2 40874.8 FALSE FALSE TRUE 37405.5715 29086.64157 37601.8011 40121.19484 33394.92399 31646.45992 32940.95846 24130.92188 37838.42775 40631.67487 0.92060127 0.71586125 0.925430744 0.987436402 0.821893857 0.778861812 0.810721157 0.593894344 0.931254443 1 15.31031721 -2.409662815 0.22396346 0.992126025 2.28E-18 0.522754233 0.084502459 14.94378508 0.311873921 0.065300847 4.765802197 0.003893473 2.409662815 -0.992126025 DAEDVDLNHYR ddPTM_HeLa_CUDC101_4h_R1 2 DAEDVDLNHYR 11 0 B5MBZ8;Q15435-3;Q15435;H7C118;C9JD73;C9J177;H7C003;Q15435-5;Q15435-4;Q15435-2 B5MBZ8 PPP1R7 Protein phosphatase 1 regulatory subunit 7 0 0 ; ; 134.98 0.001556 9547000 13873.1 11095.7 10750.6 9704.6 9878 9830.3 9284.3 9082.5 11842.5 8003 FALSE FALSE TRUE 12246.91625 11437.54537 11331.80995 10100.39553 9149.31962 9642.803406 9642.398561 10116.41509 11354.34714 7955.3978 1.539447373 1.437708793 1.424417765 1.269627967 1.150076948 1.212108263 1.212057373 1.271641638 1.427250707 1 12.95771836 -3.348280254 14.9522412 1.271075804 1.258724516 0 0.155813923 0 0 0.028051184 0 0.000448456 3.348280254 -0.012351288 DAEFYEHR ddPTM_HeLa_CUDC101_4h_R1 4 DAEFYEHR 8 0 O95340;O95340-2 O95340 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 0 ;;; ;;; 195.06 6.97E-14 12469700 25101.1 21639.2 20884.2 21728 21262.4 21195.7 18955.8 21045.3 20558.5 23775.7 FALSE FALSE TRUE 22158.78711 22305.8781 22013.26302 22614.16176 19693.91511 20791.42734 19686.93156 23441.01188 19711.06993 23634.28108 0.937569754 0.943793383 0.931412424 0.956837303 0.833277519 0.87971482 0.832982035 0.991822506 0.834003364 1 14.52859336 -7.69743378 0.337790969 1.006326812 0.88169482 0 0.068858045 0.95013071 0.325589442 0.045567047 0.034729262 2.01E-08 7.69743378 -0.124631992 EAADLDAVPMS(ph)LSYEELVR ddPTM_HeLa_CUDC101_4h_R1 1 EAADLDAVPMSLSYEELVR 19 0 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;H0YC55 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 EAADLDAVPMS(0.492)LS(0.492)Y(0.015)EELVR 70.335 0.027059 4405000 922.14 1011.7 790.64 773.7 981.49 966.97 795.97 742.57 934.08 1140 TRUE FALSE FALSE 814.0481471 1042.869278 833.38439 805.2548302 909.0874381 948.5266583 826.6708295 827.1011672 895.576827 1133.219229 0.7183501 0.920271428 0.735413209 0.71059051 0.802216742 0.837019558 0.729488883 0.729868631 0.790294414 1 10.14621127 -9.412524638 0.852673697 1.018455436 0.77061733 0.053276112 0.089487762 0.364273852 0.414074495 0.062882329 0.011890322 3.87E-10 9.412524638 -0.247838106 DAFYSK(ac)TK ddPTM_HeLa_CUDC101_4h_R1 1 DAFYSKTK 8 1 Q05BQ5-2;Q05BQ5 Q05BQ5-2 MBTD1 MBT domain-containing protein 1 0 1 DAFYSK(1)TK 86.136 0.036046 3235100 886.14 795.42 682.76 1032.6 1207.9 741.48 1180.5 746.07 553.22 258.48 FALSE TRUE FALSE 782.2680125 819.9259474 719.6720708 1074.713891 1118.795623 727.3375044 1226.03228 830.9995931 530.4160374 256.9425495 3.044524989 3.191086681 2.800906554 4.182701127 4.354263729 2.830739813 4.771620282 3.234184431 2.0643371 1 8.005302009 -9.012923973 0.307027453 1.42E-07 4.033896888 0.601317599 0.667961167 1.080777189 0.15750121 1.583459035 0.336894803 9.71E-10 9.012923973 4.033896746 DAGDKDKEQELSEEDKQLQDELEMLVER ddPTM_HeLa_CUDC101_4h_R1 2 DAGDKDKEQELSEEDKQLQDELEMLVER 28 3 Q13200;C9JPC0 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 0 ; ; 71.427 3.39E-05 13029900 3185.5 2921.2 2506.1 2987.9 3154.5 2898.5 2331.17 2542.74 3318.5 2864.4 FALSE FALSE TRUE 2812.100519 3011.19871 2641.587347 3109.759477 2921.79882 2843.215942 2421.084008 2832.195243 3181.710025 2847.362421 0.987615942 1.057539668 0.927731337 1.092154428 1.026142228 0.998543747 0.850290075 0.994673253 1.11742362 1 11.47541042 -4.901293732 12.04504674 1.003515179 0.922553637 0.243918972 0.063792318 0.402391219 46.57092435 0.006608181 0.019841446 1.26E-05 4.901293732 -0.080961542 SS(ph)RT(ph)S(ph)SS(ph)DEEEEK ddPTM_HeLa_CUDC101_4h_R1 1 SSRTSSSDEEEEK 13 1 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog 4 0 S(0.466)S(0.536)RT(0.987)S(0.984)S(0.446)S(0.582)DEEEEK 64.798 0.029924 399140000 2404.5 2171.3 1947 2271 1660.6 2423.9 1887.5 1997.4 2691.1 2574.2 TRUE FALSE FALSE 2122.648155 2238.195179 2052.260709 2363.621196 1538.100846 2377.668146 1960.301507 2224.775942 2580.171719 2558.888544 0.829519582 0.874674743 0.802012543 0.923690562 0.60108161 0.929180035 0.766075378 0.869430577 1.008317351 1 11.32130159 -9.412201795 0.422072615 1.062724922 0.810609273 0.399977977 0.088622821 1.836629055 0.395073766 0.207534531 0.025892387 3.87E-10 9.412201795 -0.252115649 TDSREDEIS(ph)PPPPNPVVK ddPTM_HeLa_CUDC101_4h_R1 8 TDSREDEISPPPPNPVVK 18 1 P10644;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EPB2;P10644-2;K7EMU2;K7EMZ6 P10644 PRKAR1A "cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed" 1 0 TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(0.999)PPPPNPVVK;T(0.001)DS(0.019)REDEIS(0.98)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK ;;;;;;; 181.86 2.49E-10 8227810000 22532.6 23639 20644.3 20097.9 22315.6 21332.8 19264.31 21824.4 22543.2 22252.8 TRUE FALSE FALSE 19891.36279 24367.28957 21760.3933 20917.57923 20669.42265 20925.91238 20007.34089 24308.80148 21613.95975 22120.43936 0.899230005 1.10157349 0.983723377 0.945622232 0.934403802 0.945998949 0.904473034 1.098929415 0.977103547 1 14.43309242 -9.412089978 0.001908308 0.875861073 1.052992792 0 0.069277721 10558182.86 4733.935787 221688.6664 217730.6034 3.87E-10 9.412089978 0.177131719 ASAS(ph)PDRIPSLPQETVDQEPK ddPTM_HeLa_CUDC101_4h_R1 2 ASASPDRIPSLPQETVDQEPK 21 1 A0A494C1R1;A0A2R8Y5U1;Q76L82;Q8IXJ9 A0A494C1R1 ASXH1;ASXL1 Putative Polycomb group protein ASXL1 1 0 AS(0.155)AS(0.843)PDRIPS(0.002)LPQETVDQEPK;AS(0.083)AS(0.875)PDRIPS(0.04)LPQET(0.002)VDQEPK ; 89.803 0.00040463 57760000 2828.4 2894.1 2326.4 2425.9 3106.1 2354.4 2452.1 2387.4 3564.5 3592.2 TRUE FALSE FALSE 2496.85924 2983.263791 2452.172221 2524.838688 2876.969191 2309.493743 2546.678318 2659.171966 3417.569801 3570.833435 0.699237107 0.83545308 0.686722656 0.707072658 0.805685632 0.646766024 0.713188774 0.744692245 0.95707903 1 11.80204512 -9.411851895 0.622949775 1.051704136 0.723003862 0.771349404 0.05399209 0.405820483 0.211321846 0.077520256 0.011173092 3.87E-10 9.411851895 -0.328700274 QSPLPPQK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 QSPLPPQKK 9 1 Q01105;B2REB7 Q01105 SET Protein SET 0 1 QSPLPPQK(1)K 96.331 0.0063191 0 1017.2 1147.8 2267.2 4223.5 5184.2 4973.7 5205.8 5834.6 660.91 582.82 FALSE TRUE FALSE 897.965358 1183.162358 2389.77169 4395.752586 4801.771894 4878.834959 5406.58945 6498.78728 633.6670101 579.3533607 1.54994416 2.042211952 4.124894843 7.587342861 8.288157487 8.421173139 9.332110274 11.21731178 1.093748743 1 9.178299739 -6.27528625 0.992766471 1.153449413 9.801509595 0.970181342 0.639479291 0.057316442 0.111847211 0.116733022 0.246607698 5.31E-07 6.27528625 8.648060182 up IMSS(ph)IGEGIDFSQER ddPTM_HeLa_CUDC101_4h_R1 1 IMSSIGEGIDFSQER 15 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 IMS(0.002)S(0.998)IGEGIDFSQER 145.61 0.00031554 7379100 1634.9 1497.3 1195.8 1511 1614.2 1549.3 1284.9 1229.2 1563 1738.8 TRUE FALSE FALSE 1443.2595 1543.430038 1260.448565 1572.625111 1495.123682 1519.749684 1334.459023 1369.127159 1498.572478 1728.45754 0.834998527 0.892952243 0.729233166 0.909843068 0.865004576 0.879251962 0.772051955 0.792109223 0.866999879 1 10.75526945 -9.411820859 0.490894006 1.047446859 0.828771861 0.139061979 0.067774132 1.013426509 0.302450914 0.110161893 0.014035031 3.87E-10 9.411820859 -0.218674998 DAINQGMDEELER ddPTM_HeLa_CUDC101_4h_R1 2 DAINQGMDEELER 13 0 P11177-3;P11177-2;P11177;F8WF02;C9J634 P11177-3 PDHB "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial" 0 0 ; ; 198.52 4.00E-16 3345200 3042.1 2297 1880.21 2074.37 2144.6 2405 1926 1762.99 2297.4 2309.9 FALSE FALSE TRUE 2685.50965 2367.767847 1981.85984 2158.971775 1986.397131 2359.128632 2000.286465 1963.681655 2202.7002 2296.160612 1.169565245 1.031185639 0.863118995 0.940252944 0.865095029 1.027423177 0.871143967 0.855202221 0.959297093 1 11.16500784 -6.904203471 5.113088288 1.081026832 0.908380909 0.430769691 0.072665155 0.122947631 5.289232983 0.012511666 0.016542823 1.25E-07 6.904203471 -0.172645923 DAINQGMDEELERDEK ddPTM_HeLa_CUDC101_4h_R1 4 DAINQGMDEELERDEK 16 1 P11177-3;P11177-2;P11177;F8WF02;C9J634 P11177-3 PDHB "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial" 0 0 ;;; ;;; 184.01 1.25E-10 157852000 6333.5 6131.3 5461.43 5984.05 7049.3 6245.6 5989.7 6073.59 6163.63 6761.3 FALSE FALSE TRUE 5591.096731 6320.198086 5756.691426 6228.105424 6529.287183 6126.475586 6220.724735 6764.982935 5909.562563 6721.083487 0.831874316 0.940354051 0.856512412 0.926651995 0.971463484 0.911530946 0.925553856 1.006531603 0.879257425 1 12.71447811 -5.987775014 22.61874652 0.914953384 0.948777527 0.166964012 0.050246028 196.1715744 362948.2332 0.010052679 0.018207305 1.03E-06 5.987775014 0.033824142 DALDGPAAEAEPEHSFDGLR ddPTM_HeLa_CUDC101_4h_R1 1 DALDGPAAEAEPEHSFDGLR 20 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 195.77 2.98E-17 26507000 4539.8 3515.4 3744.9 3835.2 4187.6 4081.8 3694.8 3046.3 4231.5 4855.4 FALSE FALSE TRUE 4007.651526 3623.705307 3947.360622 3991.616033 3878.689091 4003.946466 3837.309674 3393.078478 4057.075779 4826.519865 0.830339797 0.750790509 0.817848208 0.827017426 0.803620248 0.829572151 0.795046904 0.703007254 0.84057994 1 12.2367676 -8.997362037 0.460020585 1.038945211 0.785274339 0.269119669 0.061911271 0.48423863 0.159862401 0.056435268 0.011737734 1.01E-09 8.997362037 -0.253670872 DALDGPAAEAEPEHSFDGLRR ddPTM_HeLa_CUDC101_4h_R1 2 DALDGPAAEAEPEHSFDGLRR 21 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 127.32 3.88E-07 29959400 5735.6 5827.3 5395.2 5326.8 6062.9 5745.7 5413.1 5876 5781.2 4374.3 FALSE FALSE TRUE 5063.281663 6006.832206 5686.880832 5544.049928 5615.651946 5636.110345 5621.88508 6544.900088 5542.896489 4348.281469 1.164432822 1.38142672 1.30784561 1.274997943 1.291464682 1.296169621 1.292898153 1.505169372 1.27473268 1 12.08622962 -7.897588196 0.509716392 0.996723158 1.352153832 0.228115471 0.109070089 0.275764415 0.173030326 0.038435024 0.025924033 1.27E-08 7.897588196 0.355430674 VVDES(ph)DETENQEEK ddPTM_HeLa_CUDC101_4h_R1 1 VVDESDETENQEEK 14 0 O75717;O75717-2 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 0 VVDES(0.974)DET(0.026)ENQEEK 212.03 1.21E-42 0 1304.3 1264.7 1262.7 1061.5 1154.7 1060.4 1346.8 1298.7 1356.4 1463.3 TRUE FALSE FALSE 1151.411931 1303.663908 1330.965381 1104.792558 1069.520081 1040.174637 1398.746527 1446.538758 1300.488618 1454.596227 0.791568072 0.896237653 0.915006761 0.759518372 0.735269391 0.715095102 0.961604672 0.994460684 0.894054717 1 10.50640302 -9.411724562 1.006817363 1.005137024 0.83859031 0.10958045 0.096435001 0.622693883 1.07164317 0.077975862 0.017445464 3.88E-10 9.411724562 -0.166546715 S(ph)ISLTRPGSSSLSSGPNSILCR ddPTM_HeLa_CUDC101_4h_R1 1 SISLTRPGSSSLSSGPNSILCR 22 1 A0A087WZ32;A0A087X038;A8K727;Q9HB19 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 S(0.537)IS(0.457)LT(0.006)RPGSSSLSSGPNSILCR 60.384 0.0078185 70420000 325.56 454.29 401.75 374.72 370.79 283.34 449.23 339.84 395.6 672.5 TRUE FALSE FALSE 287.3983503 468.2861364 423.4698202 390.0027013 343.4375604 277.9357616 466.5569516 378.5260119 379.2932006 668.4999401 0.429915297 0.700502885 0.633462765 0.583399755 0.513743592 0.415760339 0.69791622 0.566231931 0.567379558 1 9.384783621 -9.411409987 1.022126243 1.012170135 0.560224483 0 0.160380737 0.226978216 0.405436658 0.077594505 0.017636748 3.88E-10 9.411409987 -0.451945652 DALNIETAIK ddPTM_HeLa_CUDC101_4h_R1 4 DALNIETAIK 10 0 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4;H0YMW4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;;; ;;; 136.96 0.0087085 15929280 2557.6 2220.42 2348.3 2269.85 2526.36 2382.25 1756.18 2213.12 2783.95 3484.17 FALSE FALSE TRUE 2257.802005 2288.828508 2475.256201 2362.424294 2339.995456 2336.81255 1823.916451 2465.052635 2669.194403 3463.446002 0.651894675 0.66085295 0.714680177 0.682102245 0.675626372 0.674707372 0.526618994 0.711734103 0.770675911 1 11.75799247 -9.322633887 0.567878346 1.066788086 0.651549017 0.420441399 0.086912015 0.343503599 0.151377746 0.077005102 0.011817973 4.76E-10 9.322633887 -0.41523907 VQQEIDS(ph)DESPVAR ddPTM_HeLa_CUDC101_4h_R1 2 VQQEIDSDESPVAR 14 0 A0A087WU78;A0A087WWC4;Q6T4R5-4;Q6T4R5-3;Q6T4R5-2;Q6T4R5 A0A087WU78 NHS Nance-Horan syndrome protein 1 0 VQQEIDS(0.977)DES(0.023)PVAR;VQQEIDS(0.816)DES(0.184)PVAR ; 205.33 1.00E-17 11920600 1591.75 1733.07 1487.76 1648.07 1492.33 1510.62 1466.56 1362.37 1728 2072.16 TRUE FALSE FALSE 1405.167478 1786.463833 1568.192806 1715.285418 1382.243789 1481.80744 1523.12571 1517.456694 1656.771109 2059.8347 0.682174874 0.867285046 0.761319734 0.832729645 0.671045977 0.719381725 0.739440748 0.736688577 0.804322361 1 11.00831285 -9.411264312 0.927549739 1.013854148 0.747727176 0.229221316 0.082524103 0.275768897 0.387360654 0.053227395 0.010966411 3.88E-10 9.411264312 -0.266126972 DALTAEK(ac)SK ddPTM_HeLa_CUDC101_4h_R1 2 DALTAEKSK 9 1 Q9HB71;B2ZWH1;Q9HB71-2 Q9HB71 CACYBP Calcyclin-binding protein 0 1 ; DALTAEK(1)SK;DALTAEK(1)SK 94.297 0.018527 1586710 1673.26 1493.95 1808.59 1827.53 2715.1 2467.4 1802.68 1948.99 1275.85 1189.18 FALSE TRUE FALSE 1477.122999 1539.976829 1906.367846 1902.064573 2514.812482 2420.338456 1872.209971 2170.855144 1223.258923 1182.106704 1.249568244 1.302739273 1.612686773 1.60904643 2.127398883 2.047478833 1.58379101 1.836429093 1.034812609 1 10.20714455 -6.767227578 0.908772684 1.086956743 1.884754464 0.820231379 0.158067848 0.164744649 0.271688602 0.034707217 0.054928155 1.71E-07 6.767227578 0.797797721 TDEVPAGGS(ph)RSEAEDEDDEDYVPYVPLR ddPTM_HeLa_CUDC101_4h_R1 2 TDEVPAGGSRSEAEDEDDEDYVPYVPLR 28 1 D6RD33;D6RGI7;A0A499FJW5;Q9UJV9 D6RD33 DDX41 Probable ATP-dependent RNA helicase DDX41 1 0 T(0.007)DEVPAGGS(0.486)RS(0.486)EAEDEDDEDY(0.02)VPY(0.002)VPLR;T(0.001)DEVPAGGS(0.5)RS(0.5)EAEDEDDEDYVPYVPLR ; 82.342 8.71E-07 41138000 3873.84 2880.38 3048.04 3324.18 3243.83 2840.17 2789.6 2772.92 3278.95 2198.61 TRUE FALSE FALSE 3419.754348 2969.121094 3212.826262 3459.754429 3004.539124 2785.998489 2897.195806 3088.578004 3143.790293 2185.53257 1.56472358 1.358534361 1.470042728 1.583025793 1.374740036 1.274745811 1.325624631 1.413192394 1.438455018 1 11.09376916 -9.411174887 1.08824416 0.995226303 1.428451102 0 0.162029508 0.228728081 0.475931028 0.076765517 0.018597173 3.88E-10 9.411174887 0.433224799 CS(ph)PTVAFVEFPSS(ph)PQLK ddPTM_HeLa_CUDC101_4h_R1 1 CSPTVAFVEFPSSPQLK 17 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 CS(0.982)PT(0.018)VAFVEFPS(0.084)S(0.916)PQLK 130.77 0.0024871 4713100 2579.3 2418.6 1860.7 1886.5 2211.6 1807.8 1983.9 1655.3 2429.5 3631.5 TRUE FALSE FALSE 2276.958364 2493.114199 1961.29507 1963.439624 2048.454674 1773.319227 2060.419688 1843.732661 2329.354982 3609.899676 0.630753918 0.690632545 0.543310132 0.543904208 0.567454738 0.491237814 0.570769238 0.510743463 0.64526862 1 11.81774303 -9.41061905 0.312338052 1.219309928 0.506607668 0.296252909 0.11729945 0.519648309 0.062358519 0.134469978 0.018754162 3.88E-10 9.41061905 -0.71270226 AGS(ph)PLCNSNLQDSEEDIEPSYSLFR ddPTM_HeLa_CUDC101_4h_R1 2 AGSPLCNSNLQDSEEDIEPSYSLFR 25 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 AGS(1)PLCNSNLQDSEEDIEPSYSLFR;AGS(0.935)PLCNS(0.065)NLQDSEEDIEPSYSLFR ; 228.75 1.37E-39 34385000 4015.1 3043 3097.72 3087.4 3264.9 3035.9 3061.4 2668.8 3418.6 2094.62 TRUE FALSE FALSE 3544.456064 3136.751223 3265.192113 3213.317517 3024.054832 2977.995266 3179.479223 2972.605404 3277.683861 2082.161107 1.70229674 1.506488241 1.568174577 1.543260752 1.452363519 1.43024248 1.527009227 1.42765389 1.574173992 1 11.02386599 -9.41041055 1.096818947 0.99521765 1.532097534 0 0.190185472 0.159349576 0.338007871 0.066440715 0.01624189 3.89E-10 9.41041055 0.536879884 AQVLATIHGHAGAFPAAGDAGEGAPGGGS(ph)SPER ddPTM_HeLa_CUDC101_4h_R1 2 AQVLATIHGHAGAFPAAGDAGEGAPGGGSSPER 33 0 Q86WR7;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 0 AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.596)S(0.404)PER;AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.562)S(0.438)PER ; 62.862 0.00045419 40830000 875.83 812.1 660.79 802.45 1100.1 882.98 773.19 710.56 1129.99 993.23 TRUE FALSE FALSE 773.1665351 837.1198384 696.5143062 835.1773795 1018.947815 866.1386276 803.0121973 791.4472782 1083.411334 987.3222238 0.783094431 0.847868931 0.705457944 0.84590153 1.032031681 0.877260338 0.813323328 0.801609909 1.097322949 1 9.947377191 -9.409767474 1.122317496 1.000498739 0.836551823 0.466851257 0.085585938 0.457679466 1.026103702 0.058726714 0.014704108 3.89E-10 9.409767474 -0.163946916 ELNFVTDSVEQELPS(ph)SPKQPICFDR ddPTM_HeLa_CUDC101_4h_R1 2 ELNFVTDSVEQELPSSPKQPICFDR 25 1 B4DP81;Q8TAP6-2;Q8TAP6 B4DP81 CEP76 Centrosomal protein of 76 kDa 1 0 ELNFVTDSVEQELPS(0.782)S(0.218)PKQPICFDR;ELNFVTDSVEQELPS(0.538)S(0.461)PKQPICFDR ; 65.881 0.0011686 22274500 1924.84 1542.55 1264.14 1414.4 1873.83 1721.5 1402.03 1283.1 1460.92 1129.26 TRUE FALSE FALSE 1699.213173 1590.074137 1332.483232 1472.085346 1735.601294 1688.665256 1456.106767 1429.162918 1400.700259 1122.543111 1.513717519 1.416492713 1.187021878 1.311384241 1.546133308 1.504321071 1.297149973 1.273147466 1.247791951 1 10.13255514 -9.40957407 1.076664733 0.994687844 1.391388674 0.316257758 0.133098653 0.293408824 0.595335109 0.089752698 0.021562093 3.89E-10 9.40957407 0.39670083 DAPQDFHPDR ddPTM_HeLa_CUDC101_4h_R1 4 DAPQDFHPDR 10 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 ;;; ;;; 125.97 0.0031218 399865000 23923.2 19108.7 16665.8 19581.9 14384.7 16876 16999.5 18195.4 14114.7 17828.2 FALSE FALSE TRUE 21118.95876 19697.4164 17566.80356 20380.53452 13323.56934 16554.11842 17655.17641 20266.69079 13532.88609 17722.15707 1.191669765 1.111457049 0.991233939 1.150003041 0.751802915 0.93409162 0.996220513 1.143579233 0.763613935 1 14.11326659 IAAPELHKGDS(ph)DS(ph)EEDEPTKK ddPTM_HeLa_CUDC101_4h_R1 1 IAAPELHKGDSDSEEDEPTKK 21 2 Q92733 Q92733 PRCC Proline-rich protein PRCC 2 0 IAAPELHKGDS(0.992)DS(0.998)EEDEPT(0.01)KK 46.131 0.036696 33435000 2240.3 1945.7 2014.3 1827.7 2020.4 2251.3 2247.8 1831.8 1883.8 2301.9 TRUE FALSE FALSE 1977.69543 2005.644711 2123.199151 1902.241506 1871.359117 2208.360203 2334.498399 2040.324708 1806.148967 2288.208196 0.864298726 0.87651321 0.927887224 0.831323613 0.817827294 0.965104577 1.020229891 0.891669172 0.789328947 1 11.16000261 -9.409544815 1.125190894 1.000247339 0.897769692 0 0.086698895 0.53512004 1.207179559 0.042952146 0.010785424 3.89E-10 9.409544815 -0.102477647 SEMTAS(ph)PLVGPER ddPTM_HeLa_CUDC101_4h_R1 1 SEMTASPLVGPER 13 0 B4DIB3;A0A087X0I6;Q9P0L2-2;Q9P0L2-3;Q9P0L2 B4DIB3 MARK1 Serine/threonine-protein kinase MARK1 1 0 SEMT(0.048)AS(0.952)PLVGPER 194.98 2.22E-16 10121000 908.73 892.11 739.24 745.44 690.48 827.95 862.39 791.16 897.33 921.83 TRUE FALSE FALSE 802.2100469 919.5948517 779.2055505 775.8422653 639.544666 812.1582332 895.6526712 881.2224564 860.3416776 916.3469142 0.875443606 1.003544441 0.850339035 0.846668716 0.697928542 0.88629996 0.977416585 0.961669039 0.938882059 1 9.839750073 -9.409286732 0.531768899 1.028455827 0.879812689 0.118753058 0.083341444 2.098006335 0.752148269 0.163504609 0.021545773 3.90E-10 9.409286732 -0.148643138 S(ph)SKAS(ph)LGSLEGEAEAEASSPK ddPTM_HeLa_CUDC101_4h_R1 1 SSKASLGSLEGEAEAEASSPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 S(0.51)S(0.51)KAS(0.561)LGS(0.419)LEGEAEAEASSPK 67.227 0.0078414 61625000 7614 6179.7 5914.8 5968.4 7188.3 7225.3 6176.7 5494.2 6990.6 5788.6 TRUE FALSE FALSE 6721.498462 6370.089232 6234.571979 6211.81715 6658.03343 7087.489441 6414.937388 6119.63752 6702.444509 5754.16915 1.168109294 1.107038925 1.083487784 1.079533289 1.157079894 1.231713781 1.114832953 1.063513665 1.164797964 1 12.49039192 -9.409010531 1.024977255 0.996580281 1.129807572 0 0.069196197 0.393459721 0.708400621 0.0396542 0.009071653 3.90E-10 9.409010531 0.133227292 AS(ph)DKDITVSK ddPTM_HeLa_CUDC101_4h_R1 1 ASDKDITVSK 10 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 AS(0.867)DKDIT(0.119)VS(0.014)K 123.95 0.019358 31170000 1966.1 2150.9 2164.9 2100 2316.7 1766.1 1678.9 1435.5 3345.1 2869.4 TRUE FALSE FALSE 1735.636738 2217.16668 2281.941042 2185.647077 2145.801657 1732.414585 1743.655735 1598.911518 3207.213562 2852.332681 0.608497301 0.777316999 0.800026258 0.766266534 0.752297118 0.607367646 0.611308683 0.560562773 1.124417773 1 11.47792654 -9.408932513 0.892313148 1.020775657 0.684752455 0.719516058 0.091811435 0.357350979 0.456181697 0.085438192 0.016992631 3.90E-10 9.408932513 -0.336023202 KHS(ph)S(ph)S(ph)KDKR ddPTM_HeLa_CUDC101_4h_R1 1 KHSSSKDKR 9 3 H0Y986;H0Y8Q0 H0Y986 USP45 3 0 KHS(1)S(1)S(1)KDKR 60.972 0.0032796 0 1077 1218.1 1071.7 1112.6 878.6 1109 1052 1282.7 1105.9 1597.1 TRUE FALSE FALSE 950.7556926 1255.628217 1129.639344 1157.976637 813.7874284 1087.847673 1092.575992 1428.717383 1060.314334 1587.600378 0.598863357 0.7908969 0.711538848 0.729387983 0.512589591 0.68521505 0.688193331 0.899922552 0.667872311 1 10.6326321 -9.408563128 1.028172168 1.007832686 0.690548768 0 0.140792025 0.319815542 0.580330019 0.076841785 0.017646551 3.90E-10 9.408563128 -0.317283917 KY(ph)S(ph)VHLEDMATNS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 KYSVHLEDMATNSR 14 1 F2Z3A6;F8W8C2;Q9HBM0-2;Q9HBM0 F2Z3A6 VEZT Vezatin 3 0 KY(1)S(1)VHLEDMAT(0.159)NS(0.841)R 57.171 0.003215 0 2573.1 2230.6 2852.7 2365.6 2539.7 2346.4 2206.4 2013.3 2593.6 2859.5 TRUE FALSE FALSE 2271.485119 2299.322142 3006.925591 2462.079393 2352.351391 2301.646329 2291.501587 2242.485934 2486.69071 2842.491567 0.799117628 0.808910805 1.057848553 0.866169463 0.827566709 0.809728464 0.806159502 0.788915598 0.874827823 1 11.47294035 -9.408169237 1.029871697 1.003882249 0.844888872 0.092748807 0.083415968 0.50568643 0.92148569 0.060914431 0.01402067 3.91E-10 9.408169237 -0.158993378 FHALS(ph)SPQSPFPSTPTSR ddPTM_HeLa_CUDC101_4h_R1 1 FHALSSPQSPFPSTPTSR 18 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 FHALS(0.512)S(0.488)PQS(0.001)PFPSTPTSR 81.226 0.0054978 14161000 1124.9 1088 1014.2 1180.6 1577.1 1302.5 1215.4 1262.6 1583.4 1887.8 TRUE FALSE FALSE 993.0409272 1121.51999 1069.03072 1228.749971 1460.760475 1277.656983 1262.278385 1406.32928 1518.131582 1876.571282 0.529178367 0.59764316 0.569672322 0.654784597 0.778419924 0.680846497 0.672651445 0.749414261 0.808992228 1 10.87388338 -9.407860242 1.122605144 1.000911394 0.644731579 0.510837788 0.09121737 0.211209511 0.474164898 0.058829008 0.014775047 3.91E-10 9.407860242 -0.356179815 DAQHYGGWEHR ddPTM_HeLa_CUDC101_4h_R1 2 DAQHYGGWEHR 11 0 Q14697;Q14697-2;F5H6X6;E9PKU7 Q14697 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 135.1 0.0012685 420690000 15116.5 12235.1 12103.7 13588.2 15170.6 13210.2 13553.6 11820 12473.4 13493.8 FALSE FALSE TRUE 13344.56679 12612.04893 12758.06263 14142.38553 14051.49506 12958.23744 14076.36689 13165.54102 11959.24117 13413.53828 0.994858069 0.940247731 0.951133278 1.054336689 1.047560664 0.96605662 1.049414897 0.981511421 0.891579904 1 13.71140223 -6.257301506 24.91463345 0.989132637 1.019981834 0.184215747 0.045493029 489.4513705 2947049.128 0.005133018 0.008321709 5.53E-07 6.257301506 0.030849197 QPVGGGQK(ac)LLTR ddPTM_HeLa_CUDC101_4h_R1 2 QPVGGGQKLLTR 12 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ; QPVGGGQK(1)LLTR;QPVGGGQK(1)LLTR 128.08 0.000868 59994000 598.66 858.1 632.71 1442.34 1833.21 1544.59 1704.81 1820.54 757.82 426.19 FALSE TRUE FALSE 528.4859823 884.5370439 666.9162164 1501.16486 1697.977751 1515.129519 1770.565093 2027.782915 726.5823388 423.6550029 1.247444214 2.087871116 1.574196485 3.543366298 4.007925644 3.576328637 4.179261617 4.786401437 1.715033067 1 8.726746096 -6.236803798 0.852064975 1.07882279 4.386417148 0.893674347 0.428785294 0.09977486 0.142677595 0.069165785 0.161235872 5.80E-07 6.236803798 3.307594358 up QSS(ph)GASSSSFSSSR ddPTM_HeLa_CUDC101_4h_R1 1 QSSGASSSSFSSSR 14 0 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;F6S8Q4;A0A2R8Y645;O00571;O00571-2;A0A2U3TZJ9;A0A0D9SFB3;A0A0D9SF53;A0A0D9SG12;A0A2R8YF78;A0A2R8YDT5;A0A2R8Y7T2;A0A0J9YVQ7;A0A087WVZ1 A0A2R8Y5G6 DDX3X ATP-dependent RNA helicase DDX3X 1 0 QS(0.212)S(0.726)GAS(0.062)SSSFSSSR 213 6.42E-24 7969400 1782.4 1473.8 1080.3 1492.2 1211.5 1351.6 1758.1 1544 1316.5 1133.4 TRUE FALSE FALSE 1573.469774 1519.206031 1138.704286 1553.058366 1122.130059 1325.820482 1825.910506 1719.762719 1262.233313 1126.658486 1.396580945 1.34841751 1.010691615 1.378464179 0.995980656 1.176772285 1.620642393 1.526427697 1.12033356 1 10.13783456 -9.407803645 1.049540912 0.993949211 1.304648539 0.19770152 0.193643738 0.63424101 1.210542589 0.150379126 0.035301781 3.91E-10 9.407803645 0.310699329 FEAHPNDLYVEGLPENIPFRS(ph)PSWYGIPR ddPTM_HeLa_CUDC101_4h_R1 1 FEAHPNDLYVEGLPENIPFRSPSWYGIPR 29 1 P78347-2;P78347-4;P78347-3;P78347;A0A494C1K3;A0A494C0Q7 P78347-2 GTF2I General transcription factor II-I 1 0 FEAHPNDLY(0.001)VEGLPENIPFRS(0.682)PS(0.247)WY(0.07)GIPR 55.177 0.0025243 10859000 984.91 1107.5 753.03 840.36 1312.5 945.2 761.06 813.18 947.71 1222.3 TRUE FALSE FALSE 869.4603428 1141.620762 793.7410796 874.6335131 1215.67949 927.1718848 790.4143391 905.7491242 908.6449927 1215.029705 0.715587725 0.939582594 0.653268868 0.719845374 1.000534789 0.763085775 0.650530877 0.745454305 0.747837677 1 10.24677587 -9.407748284 0.887454875 1.015312086 0.770812425 0 0.132661303 0.585741477 0.738047775 0.101588161 0.020131564 3.91E-10 9.407748284 -0.244499662 (ac)ASGVAVS(ph)DGVIK ddPTM_HeLa_CUDC101_4h_R1 1 ASGVAVSDGVIK 12 0 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 1 0 AS(0.07)GVAVS(0.93)DGVIK 85.42 0.0032163 4910300 3424.8 3572.6 2616.1 3337.6 4094.5 3034.3 2845.8 2908.2 3789.9 3976.7 TRUE FALSE FALSE 3023.350136 3682.667571 2757.534279 3473.721754 3792.456892 2976.425783 2955.563459 3239.257733 3633.678718 3953.046412 0.764815239 0.931602412 0.697571946 0.878745502 0.959375757 0.752944811 0.74766728 0.819433266 0.919209728 1 11.94874918 -9.407124864 0.981138512 1.006927273 0.81605787 0.298243236 0.082917595 0.458294547 0.741655376 0.064938514 0.014252063 3.92E-10 9.407124864 -0.190869403 FQEQECPPS(ph)PEPTRK ddPTM_HeLa_CUDC101_4h_R1 1 FQEQECPPSPEPTRK 15 1 P62070-2;P62070-3;P62070;P62070-4 P62070-2 RRAS2 Ras-related protein R-Ras2 1 0 FQEQECPPS(0.997)PEPT(0.003)RK 70.114 0.020887 11531000 1378.1 1145.1 831.84 1316.7 965.19 1084.3 745.24 557.2 849.92 427.89 TRUE FALSE FALSE 1216.561207 1180.379174 876.8117866 1370.400717 893.9898566 1063.618784 773.9841564 620.6293957 814.8859379 425.3448913 2.8601759 2.775110735 2.061413701 3.22185771 2.101799916 2.500603172 1.819662519 1.459120371 1.915823969 1 8.732489316 -9.406942577 1.126733984 0.997967395 2.403290972 0.227380107 0.56530714 0.323896039 0.733804385 0.356238466 0.0899191 3.92E-10 9.406942577 1.405323577 QDS(ph)LDIYNER ddPTM_HeLa_CUDC101_4h_R1 2 QDSLDIYNER 10 0 Q9ULQ0-2;Q9ULQ0 Q9ULQ0-2 STRIP2 Striatin-interacting protein 2 1 0 QDS(1)LDIYNER;QDS(1)LDIYNER ; 148.41 0.00059466 16291900 3005.6 3047.3 3720.9 2677.8 3682 2413.97 3192.8 2852.3 6263.3 4500.3 TRUE FALSE FALSE 2653.288124 3141.183701 3922.063109 2787.012258 3410.386196 2367.927544 3315.947366 3176.994303 6005.124123 4473.532015 0.593108111 0.702170833 0.876726286 0.623000405 0.762347555 0.529319459 0.741236981 0.710175828 1.34236753 1 12.12719863 -9.40604639 1.04167777 1.006668758 0.686598484 0.585427136 0.145197519 0.287148854 0.538532026 0.069879028 0.01632304 3.93E-10 9.40604639 -0.320070275 VDNDENEHQLS(ph)LR ddPTM_HeLa_CUDC101_4h_R1 2 VDNDENEHQLSLR 13 0 P06748;P06748-2;P06748-3;E5RGW4 P06748 NPM1 Nucleophosmin 1 0 VDNDENEHQLS(1)LR;VDNDENEHQLS(1)LR ; 88.637 0.01273 9522300 5158 4224 5127.5 4673.6 6407.8 5391.5 4449.6 4030.9 6122.1 6135 TRUE FALSE FALSE 4553.387059 4354.136433 5404.70816 4864.209609 5935.10936 5288.66612 4621.222563 4489.761363 5869.744447 6098.508747 0.746639424 0.7139674 0.886234387 0.7976064 0.973206665 0.86720645 0.757762718 0.736206432 0.962488485 1 12.57424079 -9.405346691 1.134573867 0.999889577 0.8089392 0.44396382 0.076405013 0.371327646 0.855791112 0.055579312 0.014158956 3.93E-10 9.405346691 -0.190950377 DASDDLDDLNFFNQK ddPTM_HeLa_CUDC101_4h_R1 4 DASDDLDDLNFFNQK 15 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 0 0 ;;; ;;; 210.44 8.34E-23 55998400 10417.3 9820.3 8847.6 8599 9443.5 9913 9214.9 8415.8 9788.6 11346.9 FALSE FALSE TRUE 9196.199886 10122.8518 9325.928019 8949.704388 8746.871819 9723.926041 9570.32178 9373.820654 9385.109765 11279.40813 0.815308727 0.89746303 0.826810051 0.793455142 0.775472588 0.862095415 0.848477302 0.831056075 0.832056935 1 13.46140375 -9.378591351 0.617347884 1.030731128 0.827220151 0 0.061384434 0.428508074 0.222836897 0.050072691 0.007519249 4.18E-10 9.378591351 -0.203510977 HS(ph)PIAPSS(ph)PSPQVLAQK ddPTM_HeLa_CUDC101_4h_R1 1 HSPIAPSSPSPQVLAQK 17 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 2 0 HS(1)PIAPS(0.316)S(0.677)PS(0.007)PQVLAQK 113.63 0.0023892 13832000 4689.6 3608.8 3144.7 2776.5 2804 2984.3 2532.8 1500.2 4271.7 4719.3 TRUE FALSE FALSE 4139.892197 3719.982851 3314.711994 2889.737671 2597.154506 2927.37945 2630.490944 1670.976704 4095.618718 4691.229394 0.882474901 0.792965455 0.706576404 0.615987288 0.553619166 0.62401115 0.560725286 0.356191643 0.873037401 1 12.19575033 -6.189624983 0.344196039 1.013825512 0.35697459 0.875083093 0.064560636 0.35548495 0.079174949 0.027912178 0.088770618 6.46E-07 6.189624983 -0.656850921 NFELVDS(ph)SPCKK ddPTM_HeLa_CUDC101_4h_R1 2 NFELVDSSPCKK 12 1 A0A087WUU7;Q96GX5-2;Q96GX5-3;Q96GX5 A0A087WUU7 MASTL Serine/threonine-protein kinase greatwall 1 0 NFELVDS(0.5)S(0.5)PCKK;NFELVDS(0.5)S(0.5)PCKK ; 155.98 0.00038335 64365000 8226.4 6792.5 6602.4 6275.9 6997.5 6531.2 5767.5 4522.7 7997.5 4347 TRUE FALSE FALSE 7262.113862 7001.768874 6959.345715 6531.858329 6481.308366 6406.628242 5989.954407 5037.545887 7667.839665 4321.143851 1.680599886 1.620350795 1.610533219 1.511604 1.499905717 1.482623227 1.386196483 1.165789907 1.774493035 1 12.07719754 -9.404639833 1.127189197 0.999597193 1.514132957 0 0.27370551 0.259475246 0.588937588 0.104386418 0.026448416 3.94E-10 9.404639833 0.514535764 ADIDVSGPKVDIDT(ph)PDIDIHGPEGK ddPTM_HeLa_CUDC101_4h_R1 2 ADIDVSGPKVDIDTPDIDIHGPEGK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ADIDVS(0.066)GPKVDIDT(0.934)PDIDIHGPEGK;ADIDVSGPKVDIDT(1)PDIDIHGPEGK ; 116.04 3.41E-08 97304000 22901 16993.7 17546.6 18361.2 23858.1 15666.1 13789.9 15726.4 15752.6 11803.3 TRUE FALSE FALSE 20216.5795 17517.25575 18495.22227 19110.0491 22098.1355 15367.29524 14321.78106 17516.62981 15103.27116 11733.09345 1.723039162 1.492978457 1.576329581 1.628730666 1.883402327 1.30973944 1.220631296 1.492925109 1.287236928 1 13.51829581 -9.404406635 1.082384389 0.994025114 1.551708895 0.362493455 0.197834943 0.328979267 0.677556333 0.141407457 0.034417674 3.94E-10 9.404406635 0.557683781 WS(ph)GNEPTDEFSDLPLR ddPTM_HeLa_CUDC101_4h_R1 2 WSGNEPTDEFSDLPLR 16 0 Q96II8-3;Q96II8;Q96II8-2;E9PD99;Q96II8-4 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 0 WS(0.888)GNEPT(0.111)DEFS(0.001)DLPLR;WS(0.666)GNEPT(0.334)DEFSDLPLR ; 160.64 5.91E-05 31392000 2911 2406 1865.99 2086.1 2327.4 2443.7 2455.7 2296.7 2131.22 1690.88 TRUE FALSE FALSE 2569.776993 2480.126008 1966.871064 2171.180175 2155.712339 2397.090494 2550.417172 2558.147044 2043.37021 1680.822571 1.528880584 1.475543018 1.170183634 1.291736685 1.282534145 1.426141305 1.51736252 1.521961383 1.215696556 1 10.71495172 -9.404360701 1.075107289 0.994874419 1.404500728 0.41676228 0.13038171 0.299108589 0.606096314 0.094200844 0.022774513 3.94E-10 9.404360701 0.409626309 NFS(ph)IQVR ddPTM_HeLa_CUDC101_4h_R1 1 NFSIQVR 7 0 I3L4X8;H3BM21;P05106-2;P05106-3;P05106 I3L4X8 ITGB3 Integrin beta;Integrin beta-3 1 0 NFS(1)IQVR 85.265 0.024902 8409500 1302.9 913.63 939.2 1263.4 1128.6 982.19 1017.5 983 1056.7 792.18 TRUE FALSE FALSE 1150.176037 941.7778574 989.9759929 1314.926913 1045.345426 963.4563622 1056.745316 1094.900747 1013.142379 787.4680781 1.460600206 1.195956869 1.257163332 1.669816148 1.327476574 1.223486245 1.341953211 1.390406515 1.286582157 1 9.621077631 -9.40428639 0.961975685 0.984606156 1.362937967 0.142444288 0.154841681 0.398347628 0.614785645 0.110807822 0.023940985 3.94E-10 9.40428639 0.378331812 STPFIVPS(ph)SPTEQEGR ddPTM_HeLa_CUDC101_4h_R1 5 STPFIVPSSPTEQEGR 16 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 STPFIVPS(0.948)S(0.052)PTEQEGR;STPFIVPS(0.441)S(0.441)PT(0.118)EQEGR;STPFIVPS(0.489)S(0.489)PT(0.023)EQEGR;STPFIVPS(0.616)S(0.38)PT(0.004)EQEGR;STPFIVPS(0.721)S(0.27)PT(0.009)EQEGR ;;;; 236.31 2.44E-43 1624699400 15103.5 13279.02 13754.91 12724.25 14194.69 13893.8 12882.04 13946.7 14815.4 15116.1 TRUE FALSE FALSE 13333.09063 13688.13087 14498.54204 13243.19991 13147.576 13628.79891 13378.9046 15534.33595 14204.70294 15026.18876 0.887323515 0.910951611 0.96488486 0.881341245 0.874977428 0.907003042 0.890372456 1.033817437 0.945329728 1 13.87519151 -9.404137746 1.069142797 1.001205232 0.91371549 0.123092616 0.048484191 0.483119458 0.965974243 0.03242762 0.007798704 3.94E-10 9.404137746 -0.087489742 DATLLIHEATLEDGLEEEAVEK ddPTM_HeLa_CUDC101_4h_R1 1 DATLLIHEATLEDGLEEEAVEK 22 0 E7ES68;G5E9D5;Q9BQ52;Q9BQ52-3;Q9BQ52-4 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 0 0 100.59 0.00013266 2738400 1393.3 1263 996.34 1295.5 1712.6 1200.6 968.61 1349.5 1247.9 1192.4 FALSE FALSE TRUE 1229.979486 1301.911533 1050.205154 1348.33609 1586.26491 1177.700555 1005.969612 1503.121625 1196.461034 1185.307552 1.037688053 1.098374452 0.88601912 1.137541128 1.338272845 0.993582259 0.848699235 1.268127941 1.009409779 1 10.21104573 DATNVGDEGGFAPNILENK ddPTM_HeLa_CUDC101_4h_R1 4 DATNVGDEGGFAPNILENK 19 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ;;; ;;; 268.13 1.36E-71 118869400 10955.8 10016.2 8587.4 8570.1 9486.1 8549.4 8382.3 9361.6 7943.3 12642.8 FALSE FALSE TRUE 9671.577732 10324.78725 9051.660819 8919.625721 8786.329302 8386.334439 8705.608119 10427.2867 7615.873812 12567.60006 0.76956441 0.821540087 0.720237816 0.709731824 0.69912547 0.667298004 0.692702511 0.829695936 0.605992693 1 13.61742156 -9.065210933 0.39891247 1.069960454 0.709455798 0 0.131858858 0.60996223 0.143077517 0.093348439 0.017561541 8.61E-10 9.065210933 -0.360504656 DATNVGDEGGFAPNILENKEGLELLK ddPTM_HeLa_CUDC101_4h_R1 2 DATNVGDEGGFAPNILENKEGLELLK 26 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 165.47 1.15E-11 53768000 2072.67 2281.8 2014.86 2020.02 2697.5 1983.85 2111.4 3042.4 1888 2070.04 FALSE FALSE TRUE 1829.714765 2352.099553 2123.789426 2102.405147 2498.510799 1946.011367 2192.837405 3388.734518 1810.175841 2057.72731 0.88919205 1.143056975 1.032104408 1.021712224 1.214208893 0.945709063 1.065659864 1.646833622 0.87969666 1 11.00683609 -4.262049007 3.630380083 0.990928078 1.720137589 0.776396306 0.100310694 0.096023672 2.287966387 0.014616599 0.188906761 5.47E-05 4.262049007 0.72920951 DAVAHCHEAER ddPTM_HeLa_CUDC101_4h_R1 1 DAVAHCHEAER 11 0 P49792;J3KQ37;O14715;Q99666;Q99666-2;F8W705;H0YBN8 P49792 RANBP2;RGPD8;RGPD5 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6 0 0 109.39 0.0054245 609860 567.89 155.69 502.74 657.2 332.77 287.03 273.09 198.61 442.87 483.11 FALSE FALSE TRUE 501.3227951 160.4866244 529.9196451 684.0034567 308.2222201 281.555381 283.6231728 221.2189596 424.6147112 480.2364402 1.043908277 0.334182521 1.103455716 1.424305611 0.641813478 0.586284916 0.590590695 0.460645926 0.88417845 1 8.907601069 -5.548796968 24.82264209 0.997598832 0.560937658 0.362093877 0.256904708 151.8425975 145423.6327 0.036759605 0.073521019 2.83E-06 5.548796968 -0.436661174 DAVLLVFANK ddPTM_HeLa_CUDC101_4h_R1 1 DAVLLVFANK 10 0 F5H423;P84077;P61204;C9J1Z8;P61204-2;P84085 F5H423;P84085 ARF1;ARF3;ARF5 ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 5 0 0 147.51 0.0043471 370470 706.39 589.69 630.89 624.47 499.65 668.88 760.65 433.58 547.7 628.99 FALSE FALSE TRUE 623.588035 607.8576499 664.9978217 649.9385858 462.7918149 656.1222284 789.9885253 482.9369946 525.1235742 625.2487395 0.99734393 0.972185326 1.06357323 1.039488038 0.740172328 1.049377931 1.263478797 0.772391792 0.839863467 1 9.288286434 DAVTYTEHAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 DAVTYTEHAKR 11 1 P62805 P62805 HIST1H4A Histone H4 0 1 ; DAVTYTEHAK(1)R;DAVTYTEHAK(1)R 159.99 0.00010755 12293300 2960 2417.8 1288.45 2317.9 2927.1 3538.9 3178.9 2025.17 1231.06 2021.09 FALSE TRUE FALSE 2613.033287 2492.289552 1358.107504 2412.433981 2711.173665 3471.401379 3301.511238 2255.707167 1180.315186 2009.068467 1.300619332 1.240519969 0.675988662 1.200772408 1.349468029 1.727866141 1.643304493 1.122762715 0.587493759 1 10.97231101 -5.658900276 3.300160258 1.117345234 1.514357597 0.366369643 0.276055656 0.195805229 4.211271712 0.033977714 0.071525131 2.19E-06 5.658900276 0.397012363 DAYCCAQQGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 DAYCCAQQGKR 11 1 Q9NR33 Q9NR33 POLE4 DNA polymerase epsilon subunit 4 0 1 ; DAYCCAQQGK(1)R;DAYCCAQQGK(1)R 135.86 0.00058639 2797300 239.07 364.15 463.61 1165.53 1329.54 1503.77 1679.5 1582.44 0 0 FALSE TRUE FALSE 211.046577 375.3690299 488.6741589 1213.065351 1231.462483 1475.088093 1744.278878 1762.578573 0 0 0 GDDDEES(ph)DEEAVK ddPTM_HeLa_CUDC101_4h_R1 2 GDDDEESDEEAVK 13 0 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 GDDDEES(1)DEEAVK;GDDDEES(1)DEEAVK ; 203.85 4.01E-17 33909000 6015.6 4939.7 5176.2 5179.9 4315.6 5521.2 4569.6 3896.1 5968 8859.1 TRUE FALSE FALSE 5310.460487 5091.886302 5456.041029 5391.158711 3997.246786 5415.892309 4745.851003 4339.616275 5721.996514 8806.405679 0.603022468 0.578202559 0.619553678 0.61218605 0.453902186 0.614994642 0.538908969 0.49277951 0.649753909 1 13.10433759 -9.404082954 0.393727595 1.168181516 0.532028214 0.271512205 0.119985354 0.472545318 0.088515588 0.128310818 0.016291959 3.94E-10 9.404082954 -0.636153302 LHPPS(ph)PVPQGVCPAHR ddPTM_HeLa_CUDC101_4h_R1 2 LHPPSPVPQGVCPAHR 16 0 Q96F44-2;Q96F44-3;Q96F44 Q96F44-2 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 0 LHPPS(1)PVPQGVCPAHR;LHPPS(1)PVPQGVCPAHR ; 106.44 0.0014297 23633000 3935 3379.9 3030.7 2972.7 3453.7 3117.4 2994.1 2683.09 3381.2 2452.24 TRUE FALSE FALSE 3473.745265 3484.030713 3194.548809 3093.939555 3198.927432 3057.940789 3109.58344 2988.52212 3241.825505 2437.653967 1.425036249 1.429255653 1.310501348 1.269228363 1.312297592 1.254460571 1.275645962 1.225982916 1.32989569 1 11.25127763 -9.403980522 1.130003224 0.999986301 1.32106526 0 0.118327521 0.208133778 0.475339158 0.052277216 0.01329115 3.94E-10 9.403980522 0.321078959 DCDLQEDACYNCGR ddPTM_HeLa_CUDC101_4h_R1 2 DCDLQEDACYNCGR 14 0 P62633-2;P62633;P62633-7;P62633-3 P62633-2 CNBP Cellular nucleic acid-binding protein 0 0 ; ; 225.79 3.41E-32 10306100 3519.5 3739 3849.8 3471.6 4685.6 4333.9 4722 2792.3 4381.3 1631.28 FALSE FALSE TRUE 3106.949545 3854.194158 4057.931833 3613.186854 4339.952623 4251.238078 4904.129122 3110.164145 4200.70096 1621.577074 1.916004854 2.376818358 2.502460042 2.228193104 2.67637764 2.621668835 3.024296039 1.917987245 2.590503422 1 10.66318188 -8.107349329 0.477912974 0.961268653 2.61727126 0 0.557794429 0.26160757 0.140705243 0.18107955 0.098070404 7.81E-09 8.107349329 1.656002607 KSSSISEEKGDS(ph)DDEKPR ddPTM_HeLa_CUDC101_4h_R1 1 KSSSISEEKGDSDDEKPR 18 3 S4R3H4;Q9UKV3;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 KSSSISEEKGDS(1)DDEKPR 69.431 0.012628 49050000 2972.3 2839.6 2844.8 2916.5 2831.1 2442.2 2714 3043.6 3419.4 3521.9 TRUE FALSE FALSE 2623.8915 2927.08471 2998.598493 3035.447476 2622.255393 2395.619104 2818.679889 3390.071121 3278.450885 3500.951582 0.749479517 0.836082603 0.856509558 0.867034977 0.749012185 0.68427656 0.805118215 0.968328479 0.936445651 1 11.77353139 -9.403871819 1.034634734 1.004355746 0.806445313 0.383018751 0.076177388 0.393226117 0.726068935 0.058958095 0.013722658 3.95E-10 9.403871819 -0.197910433 DCGATWVVLGHSER ddPTM_HeLa_CUDC101_4h_R1 2 DCGATWVVLGHSER 14 0 P60174;P60174-3;P60174-4;U3KPZ0;U3KPS5;U3KQF3 P60174 TPI1 Triosephosphate isomerase 0 0 ; ; 145.1 0.00034597 43569000 11523.3 9075.6 6567 8367.5 7222.5 8462.8 7989 7699.3 7169.6 3391.6 FALSE FALSE TRUE 10172.55624 9355.208479 6922.031884 8708.762817 6689.710564 8301.38619 8297.138406 8575.75719 6874.066053 3371.426612 3.017285384 2.774851585 2.053146243 2.583109116 1.984237337 2.462276996 2.461017059 2.543658272 2.038919082 1 11.71914348 -9.418315638 1.121728516 0.99191948 2.512323128 0.37819604 0.420961044 0.194282003 0.433572132 0.23210069 0.057350364 3.82E-10 9.418315638 1.520403647 DCGEYAHTR ddPTM_HeLa_CUDC101_4h_R1 1 DCGEYAHTR 9 0 Q5T8A0;Q9Y399 Q5T8A0 MRPS2 "28S ribosomal protein S2, mitochondrial" 0 0 121.5 0.00031097 0 2883.6 1481.8 2359.2 2670.5 2304.8 1962.4 1802.6 1050.7 2048.1 1592.4 FALSE FALSE TRUE 2545.588779 1527.452502 2486.745488 2779.414533 2134.779496 1924.97049 1872.126886 1170.307441 1963.676451 1582.928334 1.608151629 0.964953668 1.570977937 1.755868837 1.348626751 1.216081896 1.182698449 0.739330654 1.240534021 1 10.62838022 -4.113591827 1.553124413 1.326420715 0.350436071 0.363228398 0.240139589 1.67717914 2.824708937 0.042057877 2.759690819 7.70E-05 4.113591827 -0.975984645 SSFSSTSES(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 3 SSFSSTSESPTR 12 0 Q6ZMT1-2;Q6ZMT1 Q6ZMT1-2 STAC2 SH3 and cysteine-rich domain-containing protein 2 1 0 SSFS(0.001)S(0.008)T(0.005)S(0.031)ES(0.954)PT(0.001)R;SSFSS(0.001)T(0.001)S(0.003)ES(0.764)PT(0.231)R;SSFSST(0.001)S(0.002)ES(0.968)PT(0.029)R ;; 165.35 4.57E-05 52928700 3431.5 3324.3 3117.88 2857.61 3212.11 3197.8 3088.45 3508.4 3763.2 3860.8 TRUE FALSE FALSE 3029.264772 3426.717743 3286.442024 2974.155687 2975.159045 3136.807293 3207.572551 3907.782075 3608.079303 3837.83579 0.78931589 0.892877635 0.8563269 0.774956473 0.775217911 0.817337548 0.835776392 1.01822545 0.940133841 1 11.90607727 -9.40384484 1.023288667 1.004131575 0.836811168 0.319478264 0.070468831 0.422187861 0.758832408 0.053283796 0.012264764 3.95E-10 9.40384484 -0.167320407 AALKEWNGVVSESDS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 1 AALKEWNGVVSESDSPVK 18 1 M0R0Q7;P18858-2;P18858;B4E135;F5GZ28;M0QY71;M0R1G7 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 0 AALKEWNGVVS(0.001)ES(0.286)DS(0.713)PVK 107.56 0.00034329 25380000 2332.2 1643.9 1889.2 1674.7 2180.5 1978.3 1712 1807.7 1982.2 1390 TRUE FALSE FALSE 2058.823051 1694.54661 1991.335867 1743.001505 2019.648859 1940.567224 1778.032413 2013.481261 1900.492877 1381.732218 1.49003043 1.226392921 1.441187982 1.261461144 1.461678922 1.40444523 1.286814037 1.457215251 1.375442254 1 10.43226233 -9.403723375 0.999812703 0.987924757 1.382092863 0 0.143450995 0.22978629 0.390179807 0.067677567 0.01521851 3.95E-10 9.403723375 0.394168106 VFCVEEEDS(ph)ESSLQK ddPTM_HeLa_CUDC101_4h_R1 2 VFCVEEEDSESSLQK 15 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VFCVEEEDS(0.995)ES(0.005)SLQK;VFCVEEEDS(0.981)ES(0.016)S(0.003)LQK ; 113.43 0.0019001 18420400 2459.22 2006.22 1784.63 1929.18 2094.93 2321.19 1840.9 1781.26 2014.76 1617.99 TRUE FALSE FALSE 2170.95396 2068.02926 1881.112496 2007.860299 1940.391188 2276.917168 1911.90413 1984.031438 1931.71074 1608.366124 1.349788414 1.285795087 1.169579779 1.248385097 1.206436246 1.415670931 1.188724446 1.233569527 1.201039186 1 10.65138014 -9.403692789 1.075999316 0.996723291 1.267526218 0.230281887 0.092821529 0.256559397 0.521063941 0.053416788 0.012937984 3.95E-10 9.403692789 0.270802927 TTPES(ph)PPYSSGSYDSIK ddPTM_HeLa_CUDC101_4h_R1 2 TTPESPPYSSGSYDSIK 17 0 A0A087WTU5;A0A087X0N3;Q96MY1-2;Q96MY1 A0A087WTU5 NOL4L Nucleolar protein 4-like 1 0 T(0.374)T(0.082)PES(0.544)PPYSSGSYDSIK;T(0.012)T(0.012)PES(0.977)PPYSSGSYDSIK ; 153.22 9.12E-05 247290000 5081.9 4581.5 4288.4 4174.3 4463.2 4787.5 4083.6 4238.5 4556.4 5213.6 TRUE FALSE FALSE 4486.207386 4722.650585 4520.243876 4344.545997 4133.958628 4696.186414 4241.10582 4720.993707 4368.583263 5182.589275 0.865630508 0.911253108 0.872197976 0.838296412 0.797662791 0.906146747 0.818337243 0.910933407 0.842934493 1 12.33945735 -9.403546247 0.445917475 1.044365978 0.855177298 0 0.061114618 0.925664221 0.224886877 0.081464453 0.010291623 3.95E-10 9.403546247 -0.189188681 Y(ph)LKRSIITS(ph)REQGIR ddPTM_HeLa_CUDC101_4h_R1 2 YLKRSIITSREQGIR 15 3 Q8NG66-4 Q8NG66-4 2 0 Y(0.955)LKRS(0.044)IIT(0.004)S(0.998)REQGIR;Y(0.933)LKRS(0.064)IIT(0.006)S(0.997)REQGIR ; 58.246 0.024999 77944000 9204.3 9014.7 8385.5 8505.5 9147.9 7948.5 8206.3 8540.7 9274.6 10499.9 TRUE FALSE FALSE 8125.385907 9292.432222 8838.845495 8852.391054 8473.077642 7796.895606 8522.81974 9512.938765 8892.297062 10437.44613 0.778484105 0.890297503 0.846839867 0.848137652 0.81179606 0.747011818 0.816561794 0.911423987 0.851961002 1 13.34948113 -9.403383016 0.976796315 1.006603211 0.826071528 0.107345992 0.06422734 0.296913989 0.476113632 0.03965739 0.008714062 3.95E-10 9.403383016 -0.180531683 S(ph)RSDIDVNAAASAK ddPTM_HeLa_CUDC101_4h_R1 1 SRSDIDVNAAASAK 14 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 S(0.88)RS(0.12)DIDVNAAASAK 188.04 2.10E-11 667290000 17219 14272 14344 14222 14571 13119 13927 12850 13283 12034 TRUE FALSE FALSE 15200.61492 14711.7034 15119.48003 14802.03463 13496.12636 12868.77693 14464.16906 14312.79206 12735.46912 11962.42123 1.27069718 1.229826564 1.263914699 1.237377814 1.128210259 1.075766911 1.209133901 1.196479524 1.064623028 1 13.5462218 -9.403059446 1.119296946 0.99956595 1.205035523 0.556410597 0.059528118 0.281658211 0.629040723 0.045105965 0.011375384 3.95E-10 9.403059446 0.205469573 VASPSQGQVGSSS(ph)PKR ddPTM_HeLa_CUDC101_4h_R1 1 VASPSQGQVGSSSPKR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 VASPSQGQVGS(0.038)S(0.223)S(0.739)PKR 131.3 0.00025021 43955000 1988.8 1890.1 1689.2 1859.5 1766 1742.4 1781.3 1814.4 1750.9 2077.8 TRUE FALSE FALSE 1755.675879 1948.331741 1780.523262 1935.338447 1635.725698 1709.166623 1850.005338 2020.943962 1678.727161 2065.441153 0.850024643 0.943300533 0.862054704 0.937009725 0.791949795 0.827506812 0.895695012 0.978456326 0.8127693 1 11.01223424 -9.403023971 0.941018686 1.005755397 0.880956392 0 0.078965694 0.512747032 0.749713467 0.046569804 0.009859113 3.95E-10 9.403023971 -0.124799005 DDAMLLK(ac)GK ddPTM_HeLa_CUDC101_4h_R1 2 DDAMLLKGK 9 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 ; DDAMLLK(1)GK;DDAMLLK(1)GK 129.1 0.0025248 4452500 4633.2 3419.2 3272.1 3566.8 3134.3 3756.4 3083 2942.7 3221.3 4951.5 FALSE TRUE FALSE 4090.103319 3524.541499 3448.999624 3712.269521 2903.088933 3684.752929 3201.912343 3277.685073 3088.516651 4922.048258 0.830975867 0.716072114 0.700724463 0.754212337 0.58981318 0.748621861 0.65052437 0.665918923 0.627486056 1 12.26504309 -7.870956931 0.478723485 1.002906768 0.659347913 0 0.122141998 0.191203086 0.108368049 0.025610466 0.017386441 1.35E-08 7.870956931 -0.343558855 S(ph)EGFSMDR ddPTM_HeLa_CUDC101_4h_R1 2 SEGFSMDR 8 0 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 S(0.981)EGFS(0.019)MDR;S(1)EGFSMDR ; 151.22 0.0025661 34303000 4918.4 4453 3392 3964.4 3875.1 4230.5 4112.4 3111.2 3253 3158.2 TRUE FALSE FALSE 4341.872608 4590.191652 3575.38178 4126.085368 3589.241593 4149.810261 4271.016646 3465.366432 3118.909963 3139.414886 1.383019692 1.462116929 1.138868837 1.314284833 1.143283613 1.321841939 1.360449893 1.103825572 0.993468553 1 11.61627998 -9.402917363 1.140083775 1.000673861 1.288968508 0.499976537 0.111765653 0.331551471 0.77366512 0.074955628 0.019255145 3.95E-10 9.402917363 0.288294648 DDATLSGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 DDATLSGKR 9 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 1 ; DDATLSGK(1)R;DDATLSGK(1)R 152.11 0.0015675 161638000 6485.2 7353.9 7507.8 6845.6 7672.8 6100.7 5258.9 5089.6 6490.9 7244.7 FALSE TRUE FALSE 5725.014687 7580.464942 7913.694378 7124.793157 7106.79283 5984.339312 5461.737535 5668.979491 6223.342355 7201.608202 0.794963365 1.052607241 1.098878772 0.989333626 0.986834139 0.830972631 0.758405259 0.787182436 0.864160085 1 12.8141034 -5.067989514 4.271576217 0.938872783 0.77589456 0.453689302 0.08605477 0.214214787 7.552934814 0.015674661 0.043711407 8.55E-06 5.067989514 -0.162978223 GSES(ph)PNSFLDQESR ddPTM_HeLa_CUDC101_4h_R1 1 GSESPNSFLDQESR 14 0 G9CGD6;Q5T4Y8;A0A5H1ZRR2;G9CGD6-3;G9CGD6-2;Q6P9H4 G9CGD6 CNKSR3 Connector enhancer of kinase suppressor of ras 3 1 0 GS(0.305)ES(0.676)PNS(0.019)FLDQESR 122.16 0.0013325 9471700 2585.6 2167.3 1886.6 1797.4 2675.9 2126.1 1771.3 1682.4 2012 1524.9 TRUE FALSE FALSE 2282.519888 2234.071944 1988.595303 1870.705741 2478.504188 2085.548185 1839.619634 1873.917616 1929.064508 1515.829827 1.505789005 1.473827671 1.311885587 1.234113294 1.635080762 1.375845855 1.213605645 1.236232183 1.272612845 1 10.56589208 -9.402901153 1.109097563 0.998311563 1.384084619 0.208590548 0.151665628 0.31900706 0.697075745 0.095608303 0.023898487 3.95E-10 9.402901153 0.385773056 DDDHGILDQFSR ddPTM_HeLa_CUDC101_4h_R1 1 DDDHGILDQFSR 12 0 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5;C9JVY5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 0 0 162.93 7.62E-05 16021000 4627.7 3680 3587 3016.1 3517.7 3544.5 2902.1 2825.1 3405.7 4108 FALSE FALSE TRUE 4085.248021 3793.376438 3780.92407 3139.109595 3258.206279 3476.894568 3014.034969 3146.697965 3265.315605 4083.565433 1.000412039 0.928937347 0.92588796 0.768717839 0.797882716 0.851435988 0.738089059 0.77057611 0.799623676 1 11.99561363 -6.553527952 1.347103054 1.000320163 0.782391823 0.407355521 0.071864606 0.085713065 0.311656522 0.005641924 0.009299698 2.80E-07 6.553527952 -0.21792834 DDDKNNDGYIDYAEFAK ddPTM_HeLa_CUDC101_4h_R1 2 DDDKNNDGYIDYAEFAK 17 1 Q8NI22-2;Q8NI22-3;Q8NI22 Q8NI22-2 MCFD2 Multiple coagulation factor deficiency protein 2 0 0 ; ; 127.3 0.00034261 23417000 5761.4 4401.3 4362.8 4482.3 4770.4 4462.6 3644.8 3672.7 3911.6 4720.7 FALSE FALSE TRUE 5086.057426 4536.898836 4598.666165 4665.107568 4418.497096 4377.48334 3785.381157 4090.785322 3750.362192 4692.621066 1.083841494 0.966815511 0.979978161 0.994136859 0.941584039 0.932843986 0.806666701 0.871748489 0.799204142 1 12.19617825 -5.314211636 0.691084931 1.035360957 0.813723468 0.032888849 0.083328651 0.429254304 0.293700309 0.008114023 0.056950799 4.85E-06 5.314211636 -0.221637489 DDDVPLDWR ddPTM_HeLa_CUDC101_4h_R1 2 DDDVPLDWR 9 0 O95340;O95340-2 O95340 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 0 ; ; 167.23 5.30E-05 20966000 9131.9 7603.1 6643.4 7499.4 7827 8436.8 6311.1 6379.4 6620.1 8057.1 FALSE FALSE TRUE 8061.472525 7837.342499 7002.562299 7805.257947 7249.617804 8275.882097 6554.521241 7105.60511 6347.216676 8009.176011 1.006529575 0.978545419 0.874317444 0.974539445 0.905164001 1.033300066 0.818376476 0.887183039 0.792493094 1 12.96743811 -1 0.211548 1.015093113 0.231616145 0 0.0874451 35.5767991 0.418729123 0.043032353 9.482431059 0.1 1 -0.783476968 DDDVPLMWR ddPTM_HeLa_CUDC101_4h_R1 3 DDDVPLMWR 9 0 O43252 O43252 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 0 ;; ;; 164.72 0.00017182 33721100 6928.8 5678.7 5232 5733.7 5738.2 5726.4 5372.7 5204.7 5674.3 5705 FALSE FALSE TRUE 6116.616567 5853.654016 5514.857746 5967.545069 5314.904418 5617.178461 5579.926839 5797.18201 5440.402952 5671.066406 1.078565499 1.032196345 0.972455152 1.052279173 0.937196647 0.99049774 0.983929025 1.022238428 0.959326265 1 12.46940433 -6.855644882 7.024243878 1.037986848 0.992798103 0 0.04157274 0.247985131 15.90387679 0.006291219 0.008294557 1.39E-07 6.855644882 -0.045188746 DDEAAAVALSSLIHALDDLDMVAIVR ddPTM_HeLa_CUDC101_4h_R1 1 DDEAAAVALSSLIHALDDLDMVAIVR 26 0 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 0 152.96 4.63E-11 7573800 735.36 670.69 773.8 639.83 839.59 737.92 950.98 727.92 682.02 709.03 FALSE FALSE TRUE 649.1622155 691.3531639 815.6339686 665.925033 777.6551184 723.8454055 987.6596172 810.7834704 653.9068469 704.812658 0.92104222 0.980903444 1.157235131 0.944825586 1.103350102 1.027003981 1.401308001 1.150353163 0.927773983 1 9.461096024 -5.10565175 0.867105954 0.971883921 1.297453337 0.483583947 0.100856304 0.510116601 0.550839703 0.015555157 0.119699166 7.84E-06 5.10565175 0.325569416 DDEEEDPLDQLISR ddPTM_HeLa_CUDC101_4h_R1 2 DDEEEDPLDQLISR 14 0 Q9NYJ1;Q9NYJ1-2 Q9NYJ1 COA4 "Cytochrome c oxidase assembly factor 4 homolog, mitochondrial" 0 0 ; ; 193.28 8.18E-13 4476800 2901.8 2410.01 2032.94 2376.5 2429.3 2448.57 2119.31 2318.7 2859.1 3441.6 FALSE FALSE TRUE 2561.655403 2484.259552 2142.846886 2473.423942 2250.095379 2401.867607 2201.052497 2582.651435 2741.246688 3421.12921 0.748774818 0.726151922 0.626356607 0.722984661 0.657705465 0.702068662 0.643370174 0.754911983 0.801269557 1 11.74025688 -8.781360319 0.5184651 1.028181943 0.678603542 0.508616263 0.070994176 0.220338521 0.106270134 0.036756903 0.010303682 1.65E-09 8.781360319 -0.3495784 DDEENYLDLFSHK ddPTM_HeLa_CUDC101_4h_R1 2 DDEENYLDLFSHK 13 0 Q07666-2;Q07666;Q07666-3 Q07666-2 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 0 0 ; ; 133.04 0.00091986 6817600 5487.8 5325.2 5090.9 5057.2 5720.1 5081.5 4974 4536.2 5927 6620.8 FALSE FALSE TRUE 4844.528403 5489.2631 5366.129453 5263.454475 5298.139619 4984.578854 5165.848846 5052.582672 5682.686551 6581.419187 0.736091755 0.834054623 0.815345338 0.799744603 0.805014765 0.757371429 0.784914119 0.767704127 0.863443946 1 12.684183 -9.372330698 0.927864608 1.00945773 0.785742653 0.515616257 0.04918264 0.164366773 0.235629404 0.026283548 0.005745892 4.24E-10 9.372330698 -0.223715077 RS(ph)SDPALIGLSTSVSDSNFSSEEPSR ddPTM_HeLa_CUDC101_4h_R1 4 RSSDPALIGLSTSVSDSNFSSEEPSR 26 1 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-5;Q8TEW0-9;Q8TEW0-8;Q5VWU8;Q8TEW0-10 Q5VWV2 PARD3 Partitioning defective 3 homolog 1 0 RS(0.5)S(0.5)DPALIGLSTSVSDSNFSSEEPSR;RS(0.5)S(0.5)DPALIGLSTSVSDSNFSSEEPSR;RS(0.5)S(0.5)DPALIGLSTSVSDSNFSSEEPSR;RS(0.5)S(0.5)DPALIGLSTSVSDSNFSSEEPSR ;;; 191.2 4.21E-18 351549000 10216.9 9079.6 8628.5 9003.4 10521.3 9101.2 8672.5 9868.5 10134.7 10550.6 TRUE FALSE FALSE 9019.29047 9359.331714 9094.98281 9370.597568 9745.16466 8927.609774 9007.00123 10991.89015 9716.943376 10487.84456 0.859975605 0.892398019 0.867192754 0.893472201 0.929186603 0.85123399 0.858803844 1.048059979 0.926495746 1 13.35643059 -9.402636118 1.101765403 1.00063166 0.893501821 0.103374125 0.058922391 0.441972533 0.950645122 0.036695255 0.009115484 3.96E-10 9.402636118 -0.107129839 DDESNLVEEK ddPTM_HeLa_CUDC101_4h_R1 2 DDESNLVEEK 10 0 Q07866-6;Q07866-4;G3V5R9;Q07866-9;Q07866-7;G3V3H3;Q07866-10;Q07866-5;Q07866-3;G5E9S8;F8W6L3;Q07866;Q07866-8;Q07866-2;G3V2E7;E7EVH7;G3V2P7 Q07866-6 KLC1 Kinesin light chain 1 0 0 ; ; 189.72 7.80E-11 8223700 2304.3 2236.5 2237.93 2255.7 2059.86 1838.6 1936.23 1865.77 2484.8 1953.16 FALSE FALSE TRUE 2034.193447 2305.403914 2358.919265 2347.697196 1907.908232 1803.531768 2010.91104 2078.161715 2382.375492 1941.542517 1.047720268 1.18740841 1.214971727 1.209191751 0.982676513 0.928916958 1.035728562 1.070366318 1.22705296 1 10.92298759 -3.848515329 14.18822452 1.05104675 3.796501536 0 0.111308394 3551901.555 697713.6556 2.480772411 315674895.5 0.000141737 3.848515329 2.745454785 DDETMYVESK ddPTM_HeLa_CUDC101_4h_R1 1 DDETMYVESK 10 0 O15144 O15144 ARPC2 Actin-related protein 2/3 complex subunit 2 0 0 150.61 0.002477 4983200 2143.9 2033.1 1780.4 1699.3 2138.7 2037.3 1681.6 1712.9 2255.3 2521.6 FALSE FALSE TRUE 1892.595292 2095.737401 1876.653809 1768.604799 1980.932362 1998.441897 1746.459875 1907.889612 2162.335579 2506.601411 0.755044373 0.836087218 0.748684574 0.705578793 0.790286143 0.797271512 0.696744152 0.76114599 0.862656332 1 11.29151689 -9.468161938 0.484793699 1.075247099 0.750459219 0.534729523 0.057416558 0.538547803 0.151001233 0.086784746 0.010228181 3.40E-10 9.468161938 -0.32478788 DDFHWEEYLK ddPTM_HeLa_CUDC101_4h_R1 1 DDFHWEEYLK 10 0 Q9UQR0 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 0 0 105.4 0.00071794 0 2957.5 2988.1 2586.1 3344.3 3455.9 3029.1 3202.8 2746.2 3741.9 3056.1 FALSE FALSE TRUE 2610.826333 3080.159819 2725.912389 3480.695009 3200.965142 2971.324964 3326.333069 3058.816307 3587.657298 3037.922181 0.859411854 1.013903463 0.897295002 1.145748575 1.053669235 0.978078037 1.094936891 1.006877769 1.180957603 1 11.5688692 -6.278371056 24.93475225 0.936748004 1.053589766 0 0.097578894 592.2402422 872172.5664 0.010601922 0.016219025 5.27E-07 6.278371056 0.116841762 DDFNSGFR ddPTM_HeLa_CUDC101_4h_R1 1 DDFNSGFR 8 0 Q15056 Q15056 EIF4H Eukaryotic translation initiation factor 4H 0 0 141.52 0.024475 21254000 2287.4 1790.2 1979.6 1885.8 2117.6 2107.8 1919.6 1565.2 1794.6 2472.6 FALSE FALSE TRUE 2019.274439 1845.35394 2086.623164 1962.711075 1961.388867 2067.597227 1993.639615 1743.376041 1720.625828 2457.892865 0.821546971 0.750786971 0.848947972 0.798534022 0.797996078 0.841207221 0.811117377 0.709297002 0.70004102 1 11.26320632 -9.035507676 0.536049746 1.027710017 0.793085558 0 0.101257998 0.398369523 0.181104058 0.046823634 0.009984558 9.21E-10 9.035507676 -0.234624459 YQEDS(ph)DPERS(ph)DYEEQQLQKEEEAR ddPTM_HeLa_CUDC101_4h_R1 1 YQEDSDPERSDYEEQQLQKEEEAR 24 2 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 2 0 Y(0.041)QEDS(0.933)DPERS(0.866)DY(0.16)EEQQLQKEEEAR 44.863 0.032675 10157000 2129.4 2160.8 2103.2 1632.1 2208.7 2068.9 1857.7 1916.3 2066 2548.6 TRUE FALSE FALSE 1879.79496 2227.371687 2216.905354 1698.664093 2045.768601 2029.43918 1929.352111 2134.443846 1980.838606 2533.440814 0.741992846 0.879188365 0.875057093 0.670496853 0.807505978 0.801060427 0.76155405 0.842507879 0.781876804 1 11.30688241 -9.402472843 0.908741474 1.012091291 0.792897337 0 0.089573951 0.346889186 0.465088021 0.054446044 0.011137974 3.96E-10 9.402472843 -0.219193954 DDGLFSGDPNWFPK ddPTM_HeLa_CUDC101_4h_R1 2 DDGLFSGDPNWFPK 14 0 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 0 0 ; ; 163.12 0.00017257 84501000 11923.1 9401.4 8052.9 8274.7 9015.7 8603.2 8340.8 8012.9 9496.4 8373.5 FALSE FALSE TRUE 10525.49229 9691.045991 8488.264133 8612.178032 8350.629773 8439.108294 8662.50745 8925.056147 9104.954373 8323.69405 1.264521765 1.164272249 1.01977128 1.034658168 1.00323603 1.013865748 1.040704692 1.072247021 1.093859808 1 13.02300822 -6.753240186 24.66605974 1.131355214 1.029359686 0.37164243 0.063629805 197.4306327 593938.0404 0.015928732 0.022304062 1.77E-07 6.753240186 -0.101995527 DDGLFSGDPNWFPKK ddPTM_HeLa_CUDC101_4h_R1 2 DDGLFSGDPNWFPKK 15 1 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 0 0 ; ; 95.195 0.0082753 55466000 7971.3 7852.2 7333.2 7299.1 9979.7 7480 8350.8 8478.8 8408 6821.6 FALSE FALSE TRUE 7036.916298 8094.116975 7729.654974 7596.788847 9243.517413 7337.331463 8672.893153 9443.99232 8061.418681 6781.02482 1.037736402 1.19364214 1.139894806 1.120300994 1.363144607 1.082038727 1.278994456 1.392708709 1.188820111 1 12.72728761 -1 0.154665262 0.938821319 2.511608774 0.317334744 0.10328201 27.93299484 0.276497861 0.157626796 9.971667439 0.1 1 1.572787455 DAPAGS(ph)PPAS(ph)PGPQGPSTK ddPTM_HeLa_CUDC101_4h_R1 1 DAPAGSPPASPGPQGPSTK 19 0 A0A0A0MRX4;Q3MIN7;Q3MIN7-2 A0A0A0MRX4 RGL3 Ral guanine nucleotide dissociation stimulator-like 3 2 0 DAPAGS(1)PPAS(0.57)PGPQGPS(0.391)T(0.039)K 130.02 4.12E-06 0 1719 1564.9 1566.4 1296.9 1590.2 1498.7 1641 1404 1382.4 1737 TRUE FALSE FALSE 1517.501426 1613.112714 1651.084322 1349.793188 1472.894114 1470.114795 1704.29392 1563.825685 1325.416887 1726.668247 0.878861025 0.934234308 0.956225566 0.781732791 0.853026699 0.851417056 0.987041907 0.905689722 0.767615255 1 10.7537752 -9.402394481 0.654892966 1.017966325 0.890769086 0 0.091506439 1.066335923 0.630968814 0.081153957 0.012306365 3.96E-10 9.402394481 -0.127197239 DDGSWEVIEGYR ddPTM_HeLa_CUDC101_4h_R1 4 DDGSWEVIEGYR 12 0 P49448;P00367 P49448 GLUD2;GLUD1 "Glutamate dehydrogenase 2, mitochondrial;Glutamate dehydrogenase 1, mitochondrial" 0 0 ;;; ;;; 175.49 2.62E-06 117372300 5842.2 5473.4 4083.99 4006.88 5129.54 5103.94 4697.31 4032.67 4398.35 4625.37 FALSE FALSE TRUE 5157.386172 5642.028966 4304.782853 4170.297886 4751.144054 5006.590848 4878.48682 4491.732852 4217.048151 4597.858094 1.121693203 1.227099413 0.936258311 0.907008829 1.033338558 1.08889634 1.061034665 0.976918548 0.917176665 1 12.16674622 GFGGK(ac)FGVQTDR ddPTM_HeLa_CUDC101_4h_R1 2 GFGGKFGVQTDR 12 1 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 1 ; GFGGK(1)FGVQTDR;GFGGK(1)FGVQTDR 169.82 2.38E-06 19040500 2727.4 3581.7 3928 4492.8 5633.8 5453.4 5472.6 6154.8 2681.7 2531.1 FALSE TRUE FALSE 2407.698306 3692.047932 4140.359562 4676.035804 5218.205798 5349.385481 5683.680015 6855.437553 2571.159191 2516.044905 0.956937733 1.467401446 1.645582539 1.858486625 2.073971648 2.126108907 2.258973997 2.724688077 1.021905128 1 11.29694196 -6.182968041 0.604317567 0.941709117 2.525054457 0.942716076 0.13678477 0.136558768 0.094244834 0.034117376 0.099406072 6.56E-07 6.182968041 1.58334534 up DDILNGSHPVSFDK ddPTM_HeLa_CUDC101_4h_R1 2 DDILNGSHPVSFDK 14 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 ; ; 104.9 0.004691 29711000 6886.5 6085.6 6671.4 5649.3 6944.8 6833.3 6394.4 6320.5 6943.6 5079.2 FALSE FALSE TRUE 6079.274909 6273.090123 7032.076064 5879.702872 6432.49594 6702.966188 6641.03415 7040.000172 6657.381869 5048.988693 1.204057937 1.242444875 1.392769224 1.164530806 1.274016705 1.327585898 1.315319672 1.394338669 1.318557492 1 12.30177873 -10.80383483 0.147067447 0.515273624 1.431996825 0 0.118157005 8.934398499 0.2012166 1.619879802 0.196578662 1.57E-11 10.80383483 0.916723201 DDILWDDMLER ddPTM_HeLa_CUDC101_4h_R1 1 DDILWDDMLER 11 0 Q9NZJ4-2;Q9NZJ4 Q9NZJ4-2 SACS Sacsin 0 0 116.23 0.0014841 0 1093.2 856.98 669.27 865.17 1260.9 1369.3 1190.9 934.99 1057.8 939.42 FALSE FALSE TRUE 965.0567532 883.382538 705.4527606 900.4553722 1167.885919 1343.182884 1236.833412 1041.425482 1014.197036 933.8322881 1.033436909 0.945975578 0.75543839 0.964258126 1.250637758 1.438355582 1.324470601 1.115216828 1.086059081 1 9.867019662 -5.709838908 5.216108988 0.98529694 1.301558374 0.662369299 0.11063811 0.095174571 5.533797714 0.016415482 0.032908452 1.95E-06 5.709838908 0.316261434 DDIPVFLR ddPTM_HeLa_CUDC101_4h_R1 1 DDIPVFLR 8 0 Q9UBB4-2;Q9UBB4;B1AHE4;A0A1W2PQD2 Q9UBB4-2 ATXN10 Ataxin-10 0 0 120.62 0.040672 4514200 2032.5 1469.6 1183 1461.2 1604.5 1297.4 1565 1245.8 1757.3 2060.3 FALSE FALSE TRUE 1794.253431 1514.876634 1246.956558 1520.794052 1486.139232 1272.654257 1625.362574 1387.616836 1684.86335 2048.045244 0.876080954 0.739669516 0.608852056 0.742558816 0.725637891 0.621399483 0.793616537 0.677532315 0.822669008 1 11.00003187 -7.512757829 1.258096318 0.962672286 0.696218089 0.594265172 0.071749547 0.124362532 0.393858568 0.012608985 0.013388646 3.07E-08 7.512757829 -0.266454196 DDKEDEK(ac)EK(ac)DAGNFDQNK ddPTM_HeLa_CUDC101_4h_R1 1 DDKEDEKEKDAGNFDQNK 18 3 A0A0C4DG89;Q7L014;D6RJA6 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 2 DDK(0.001)EDEK(1)EK(1)DAGNFDQNK 57.52 0.034854 719710 322.98 156.51 240.18 160.46 221.81 250.9 373.64 208.46 0 173.3 FALSE TRUE FALSE 285.120774 161.3318876 253.1648573 167.0042524 205.4475182 246.1145005 388.05142 232.1902438 0 172.2692039 1.655088475 0.936510322 1.469588595 0.969437651 1.192595737 1.428662204 2.252587295 1.347833731 0 1 7.428521008 -4.984297632 23.99479361 1.268384869 1.810314587 0.187217934 0.498558028 131.2091457 200496.1115 0.044784116 0.134278017 1.04E-05 4.984297632 0.541929718 TSVLGGGEDGIEPVS(ph)PPEGMTEPGHSR ddPTM_HeLa_CUDC101_4h_R1 5 TSVLGGGEDGIEPVSPPEGMTEPGHSR 27 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;Q9Y618-2 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 TSVLGGGEDGIEPVS(0.833)PPEGMT(0.141)EPGHS(0.026)R;TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR;TSVLGGGEDGIEPVS(1)PPEGMTEPGHSR;TSVLGGGEDGIEPVS(0.977)PPEGMT(0.022)EPGHS(0.001)R;TSVLGGGEDGIEPVS(0.999)PPEGMTEPGHSR ;;;; 146.94 2.12E-11 273122000 10250.22 8886.03 8950.8 8211.44 10496.5 9337.88 8944.7 9529.42 10248.46 10220.44 TRUE FALSE FALSE 9048.70475 9159.798052 9434.707323 8546.338016 9722.194107 9159.775497 9289.700075 10614.21065 9826.014141 10159.64837 0.890651371 0.90158613 0.928645065 0.841204115 0.956941988 0.90158391 0.914372204 1.044741931 0.967160849 1 13.31056285 -9.402221095 1.119500145 1.00015422 0.917137034 0.173159701 0.050829055 0.511733077 1.1437401 0.033099916 0.008359342 3.96E-10 9.402221095 -0.083017186 DDNMFQIGK ddPTM_HeLa_CUDC101_4h_R1 4 DDNMFQIGK 9 0 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 0 ;;; ;;; 163.15 0.00021685 446527000 9899.5 9233 7687 8280.1 9407.2 8124.3 8389.7 8281.1 8850.6 9490.7 FALSE FALSE TRUE 8739.095617 9517.457786 8102.582472 8617.798268 8713.249598 7969.342514 8713.293539 9223.786951 8485.774522 9434.248894 0.926315991 1.008819875 0.858847648 0.913458863 0.923576397 0.844724641 0.923581054 0.977691712 0.899464771 1 13.20369195 -9.083277991 0.376789341 1.022770503 0.910159036 0 0.054533913 2.106495904 0.435363033 0.097320559 0.018011312 8.26E-10 9.083277991 -0.112611468 DDNMFQIGK(ac)MR ddPTM_HeLa_CUDC101_4h_R1 3 DDNMFQIGKMR 11 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 1 ;; DDNMFQIGK(1)MR;DDNMFQIGK(1)MR;DDNMFQIGK(1)MR 211.64 2.26E-13 4908100 767.25 781.19 684.7 506.36 706.32 490.25 616.79 798.31 630.955 635.87 FALSE TRUE FALSE 677.3141181 805.257538 721.7169531 527.0115495 654.2161808 480.8992981 640.5797969 889.1863835 604.9467678 632.087817 1.071550661 1.273964655 1.14179855 0.833763182 1.035008369 0.760810896 1.01343481 1.406745012 0.957061268 1 9.303981198 NVMILTNPVAAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 3 NVMILTNPVAAKK 13 1 Q9UGI8;Q9UGI8-2;F8W7T0 Q9UGI8 TES Testin 0 1 ;; NVMILTNPVAAK(1)K;NVMILTNPVAAK(1)K;NVMILTNPVAAK(1)K 218.01 1.52E-61 6913400 2374.41 3086.66 3455.4 3873.09 4806.5 4894.9 4652.96 5508.9 1723.93 1553.56 FALSE TRUE FALSE 2096.085259 3181.756336 3642.209376 4031.051351 4451.934071 4801.537938 4832.426226 6136.010908 1652.868876 1544.319356 1.357287436 2.06029687 2.358456081 2.610244659 2.882780724 3.109161275 3.129162506 3.973278509 1.070289555 1 10.59275541 -6.182548531 0.419173818 0.96365221 3.914103465 0.959032542 0.18878369 0.187535923 0.060545502 0.069728487 0.226467558 6.57E-07 6.182548531 2.950451255 up DDREDLVYQAK ddPTM_HeLa_CUDC101_4h_R1 2 DDREDLVYQAK 11 1 P62258;B4DJF2;I3L3T1;I3L0W5 P62258 YWHAE 14-3-3 protein epsilon 0 0 ; ; 110.39 0.0020423 7982300 1688.42 3643.7 4413.5 3675.5 4263.9 2812.7 2426.7 1545.24 5731.3 4566 FALSE FALSE TRUE 1490.505967 3755.958078 4652.10716 3825.402777 3949.360592 2759.052434 2520.298632 1721.143876 5495.053388 4538.841229 0.328389096 0.827514753 1.024954812 0.842814847 0.870125301 0.607875952 0.555273583 0.379203367 1.21067319 1 12.14810831 -4.628566235 1.867338342 0.735516072 0.38400242 0.210918332 0.243365907 0.690393515 3.949475985 0.039894212 0.327765504 2.35E-05 4.628566235 -0.351513651 DDSDSTLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DDSDSTLKK 9 1 Q92797;M0R3C7;A0A087WUE9;Q92797-2 Q92797 SYMPK Symplekin 0 1 ; DDSDSTLK(1)K;DDSDSTLK(1)K 162.97 0.0021891 23429000 7307.7 6159.6 6967.7 7289.2 7205.6 7071.6 6265.9 5957 5145.2 5900.7 FALSE TRUE FALSE 6451.102484 6349.369975 7344.394938 7586.485083 6674.057244 6936.721012 6507.577862 6635.120801 4933.112678 5865.602374 1.099819264 1.082475349 1.252112651 1.293385504 1.137829812 1.182610169 1.109447495 1.131191714 0.841024052 1 12.51806356 -7.808803484 0.820482669 1.019694771 1.177472508 0.533045192 0.082438877 0.317206577 0.461343356 0.019140494 0.016200824 1.55E-08 7.808803484 0.157777737 NCHTASTTT(ph)SSTPPK ddPTM_HeLa_CUDC101_4h_R1 1 NCHTASTTTSSTPPK 15 0 H0Y4A4;A0A2R8Y6E3;P81274 H0Y4A4 GPSM2 G-protein-signaling modulator 2 1 0 NCHTASTTT(0.453)S(0.015)S(0.453)T(0.079)PPK 108.25 0.0040667 3689500 2351.7 1328.8 1512.7 1616.4 2695.5 1871.2 1765.6 1044.7 2677.8 719.4 TRUE FALSE FALSE 2076.037291 1369.738753 1594.481138 1682.323779 2496.658335 1835.509978 1833.699783 1163.624425 2567.419951 715.1209768 2.903057466 1.915394454 2.229666293 2.35250235 3.491239128 2.566712538 2.564181227 1.627171434 3.59018968 1 9.482043513 -9.401262643 0.95591006 0.934601238 2.505440866 0 0.937280572 0.365747516 0.556519584 0.420754478 0.090744535 3.97E-10 9.401262643 1.570839628 SS(ph)PLLR ddPTM_HeLa_CUDC101_4h_R1 2 SSPLLR 6 0 P56524-2;P56524;Q9UKV0-10;Q9UKV0-3;Q9UKV0-4;Q9UKV0-2;Q9UKV0;Q9UKV0-5;Q9UKV0-7;Q9UQL6-2;Q9UQL6;Q9UQL6-3 P56524-2;Q9UQL6-2 HDAC4;HDAC9;HDAC5 Histone deacetylase 4;Histone deacetylase 9;Histone deacetylase 5 1 0 S(0.236)S(0.764)PLLR;S(0.019)S(0.981)PLLR ; 99.375 0.029787 46701000 4545.2 3733.7 4801.9 3839 4363.7 3749.1 4028.4 3451.2 4707.8 5907.3 TRUE FALSE FALSE 4012.418546 3848.730871 5061.505239 3995.571014 4041.798545 3677.592164 4183.776737 3844.070658 4513.742491 5872.163117 0.683294804 0.655419612 0.861949019 0.680425754 0.688298071 0.626275546 0.712476247 0.654626001 0.768667764 1 12.51967633 -9.400246614 0.553213317 1.071280994 0.687935445 0.261019527 0.094323395 0.522488697 0.206493427 0.107638877 0.014643962 3.98E-10 9.400246614 -0.38334555 GMYDGPVFDLTT(ph)TPK ddPTM_HeLa_CUDC101_4h_R1 2 GMYDGPVFDLTTTPK 15 0 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 GMYDGPVFDLT(0.004)T(0.99)T(0.006)PK;GMYDGPVFDLT(0.092)T(0.885)T(0.023)PK ; 207.97 9.55E-23 57456000 6004.1 6213 4929.4 5344.5 6422.4 5883.8 5740.8 4814.4 5382.4 7091.2 TRUE FALSE FALSE 5300.3085 6404.415166 5195.898275 5562.471811 5948.632347 5771.576318 5962.224579 5362.451836 5160.535194 7049.021227 0.7519212 0.90855382 0.737109183 0.789112649 0.843894798 0.818776981 0.845823042 0.760737081 0.732092446 1 12.78320723 -9.400080747 0.987719934 1.006593797 0.805531795 0 0.095677705 0.259247789 0.427947458 0.038693261 0.008641756 3.98E-10 9.400080747 -0.201062002 GRESDEDT(ph)EDAS(ph)ET(ph)DLAKHDEEDYVEMK ddPTM_HeLa_CUDC101_4h_R1 1 GRESDEDTEDASETDLAKHDEEDYVEMK 28 2 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 3 0 GRES(0.016)DEDT(0.986)EDAS(0.999)ET(0.999)DLAKHDEEDYVEMK 72.082 5.53E-05 10080000 3565.7 3155.6 3047.4 2768.2 2717.1 2634.3 3008.8 3247.2 2920.2 2686.6 TRUE FALSE FALSE 3147.734051 3252.820296 3212.151662 2881.099161 2516.664946 2584.055117 3124.850424 3616.848122 2799.82812 2670.619984 1.178652923 1.21800193 1.202773768 1.078812852 0.942352323 0.967586228 1.170084266 1.354310289 1.048381326 1 11.38295899 -9.400011344 1.163152572 1.001059807 1.134378918 0.132232686 0.115288268 0.77231697 1.891576053 0.08115057 0.021350926 3.98E-10 9.400011344 0.133319111 TAS(ph)EGDGGAAAGAAAAGAR ddPTM_HeLa_CUDC101_4h_R1 2 TASEGDGGAAAGAAAAGAR 19 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 T(0.063)AS(0.937)EGDGGAAAGAAAAGAR;T(0.029)AS(0.971)EGDGGAAAGAAAAGAR ; 234.36 6.27E-44 434390000 2999 2618.71 3175.93 3146.64 2865.86 3411.25 2435.48 1973.48 3016.21 3542.44 TRUE FALSE FALSE 2647.461766 2699.389351 3347.630382 3274.97358 2654.451217 3346.18609 2529.417279 2198.132986 2891.880547 3521.369409 0.751827331 0.766573749 0.950661516 0.930028406 0.753812199 0.950251366 0.718305007 0.624226751 0.821237482 1 11.78192087 -9.399823294 1.054677817 1.003165489 0.808649767 0.031197405 0.115898225 0.528724965 1.024707208 0.078348526 0.018705774 3.98E-10 9.399823294 -0.194515722 DDTIYEDEDVK ddPTM_HeLa_CUDC101_4h_R1 2 DDTIYEDEDVK 11 0 E5RHG9;B7Z2R2;P14927;P14927-2 E5RHG9 UQCRB Cytochrome b-c1 complex subunit 7 0 0 ; ; 138.25 6.14E-05 10524000 1853.91 1594.9 1049.41 1340.25 1177.91 1194.89 1215.93 1145.17 1225.63 1289.59 FALSE FALSE TRUE 1636.59748 1644.036979 1106.144279 1394.911188 1091.017926 1172.099464 1262.828827 1275.531524 1175.109013 1281.919461 1.276677303 1.282480708 0.862881259 1.08814261 0.851081491 0.914331594 0.985107774 0.995016896 0.916679283 1 10.32408991 -6.75260666 24.99878656 1.145690843 0.951288562 0.30510077 0.12269849 162.6558209 460354.6841 0.020282996 0.028435609 1.77E-07 6.75260666 -0.19440228 DDTIYEDEDVKEAIR ddPTM_HeLa_CUDC101_4h_R1 2 DDTIYEDEDVKEAIR 15 1 E5RHG9;B7Z2R2;P14927;P14927-2 E5RHG9 UQCRB Cytochrome b-c1 complex subunit 7 0 0 ; ; 198.14 3.13E-16 61474000 5640.3 4579.2 2944.6 4490.3 4933.8 4827.2 4029.5 3239.9 2921.7 3484.6 FALSE FALSE TRUE 4979.152584 4720.279724 3103.793983 4673.433843 4569.843404 4735.129203 4184.919165 3608.71712 2801.266289 3463.873444 1.437452223 1.362717143 0.896047166 1.349193011 1.319287057 1.367004101 1.208161681 1.041815522 0.808709191 1 11.75817051 -9.59140364 1.403144602 1.000948367 1.274219065 0.35052895 0.171606965 0.452320152 1.606313812 0.11481442 0.02705805 2.56E-10 9.59140364 0.273270699 EDVEVAES(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 4 EDVEVAESPLR 11 0 Q99567;J3KMX1 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 EDVEVAES(1)PLR;EDVEVAES(1)PLR;EDVEVAES(1)PLR;EDVEVAES(1)PLR ;;; 168.61 1.02E-06 465630100 11096.4 9334.9 8492.9 8304.5 9296.8 8780.7 8595.9 7427.9 8966 6483.9 TRUE FALSE FALSE 9795.696813 9622.497204 8952.051864 8643.193405 8610.993586 8613.222777 8927.446742 8273.462111 8596.417685 6445.333474 1.519812257 1.492940162 1.388919891 1.341000189 1.336004354 1.336350215 1.385102381 1.283636005 1.333742888 1 12.65403929 -9.399657485 1.113952766 0.999005086 1.395124164 0.176762046 0.1213803 0.187294248 0.414080088 0.057635905 0.014538775 3.98E-10 9.399657485 0.396119078 DDWLHNR ddPTM_HeLa_CUDC101_4h_R1 2 DDWLHNR 7 0 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 0 0 ; ; 89.369 0.031574 9188800 14853.8 10667 10415.6 11034.8 9275.4 10855.9 9314 8955.5 10557.9 11645.8 FALSE FALSE TRUE 13112.66008 10995.63763 10978.69884 11484.84684 8591.172221 10648.84179 9673.2441 9974.957921 10122.69889 11576.53026 1.132693457 0.949821525 0.948358324 0.992080233 0.742119791 0.919864722 0.835590965 0.861653509 0.87441562 1 13.49891529 -6.447912519 1.186469319 1.05955008 0.850849583 0.227707702 0.088952685 0.229158387 0.641694109 0.013141665 0.023544315 3.57E-07 6.447912519 -0.208700497 DDYVHEFCR ddPTM_HeLa_CUDC101_4h_R1 4 DDYVHEFCR 9 0 Q13564;Q13564-4;Q13564-3;Q13564-2 Q13564 NAE1 NEDD8-activating enzyme E1 regulatory subunit 0 0 ;;; ;;; 115.78 0.0068019 36945400 37634 28240.5 25404.8 28554.4 30438.8 28045.1 26060.8 23779.1 25958.8 7391.7 FALSE FALSE TRUE 33222.59957 29110.55633 26778.26033 29718.97185 28193.39037 27510.18644 27065.97379 26486.01663 24888.76728 7347.73384 4.521475641 3.961841429 3.644424379 4.044644581 3.837018458 3.744036875 3.683581139 3.604651067 3.387271208 1 12.84308365 -9.329587145 0.953258705 0.925176259 3.908398481 0.274050763 0.763802896 0.11929307 0.186351352 0.253017568 0.060483777 4.68E-10 9.329587145 2.983222222 FFPNDDPEAVS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 2 FFPNDDPEAVSSPR 14 0 F5H7T0;F6RJM5;Q96S38-2;Q96S38;A0A087X1U5 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 FFPNDDPEAVS(0.5)S(0.5)PR;FFPNDDPEAVS(0.5)S(0.5)PR ; 128.85 0.00092802 7284200 4048.1 3876.5 3896.3 4034.4 3745.2 3735.4 3999.7 3236.5 4553.7 4811.1 TRUE FALSE FALSE 3573.587855 3995.93037 4106.945764 4198.94027 3468.924057 3664.153469 4153.969769 3604.930078 4365.994559 4782.483363 0.747224315 0.83553461 0.858747528 0.877983247 0.725339493 0.766161258 0.868580077 0.753777861 0.912913695 1 12.22354423 -9.399373598 1.009796938 1.005490016 0.80284738 0.506803437 0.057868587 0.281689354 0.491105921 0.042746627 0.009773637 3.99E-10 9.399373598 -0.202642636 SPSMAVPSPGWVAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SPSMAVPSPGWVASPK 16 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 SPSMAVPSPGWVAS(1)PK;SPSMAVPSPGWVAS(1)PK ; 192.24 1.15E-11 42351000 7219.9 6886.6 6120.3 5696.3 7019.2 6480.2 5925.4 6722.3 8245.8 7573 TRUE FALSE FALSE 6373.594267 7098.767983 6451.181931 5928.619736 6501.4076 6356.600982 6153.944663 7487.53946 7905.904634 7527.955459 0.846656745 0.942987511 0.85696335 0.787547133 0.863635237 0.844399388 0.817478889 0.994631212 1.050206085 1 12.87804238 -9.399170784 0.663600133 1.021842602 0.862335966 0.515282423 0.059047088 0.783186081 0.479649341 0.075296977 0.01159126 3.99E-10 9.399170784 -0.159506636 DEDDDEEEEEEGGSWGR ddPTM_HeLa_CUDC101_4h_R1 2 DEDDDEEEEEEGGSWGR 17 0 Q5VYD6;O00165-4;O00165-6;O00165-3;O00165;O00165-2 Q5VYD6 HAX1 HCLS1-associated protein X-1 0 0 ; ; 337.53 6.11E-191 41737000 3126.8 2657.8 2480.8 2529.5 2622.4 2788.6 2591.9 2389.8 3002.9 2249.9 FALSE FALSE TRUE 2760.281244 2739.683668 2614.919552 2632.663943 2428.950777 2735.412101 2691.870451 2661.845172 2879.119191 2236.517495 1.234187191 1.224977526 1.169192532 1.17712647 1.086041483 1.223067607 1.203599103 1.190174089 1.287322455 1 11.12703833 -9.338816695 1.00315732 0.997243522 1.189849278 0 0.096806989 0.225794217 0.397609895 0.031656092 0.007857204 4.58E-10 9.338816695 0.192605756 DEDDEDGDGDGDGATGK ddPTM_HeLa_CUDC101_4h_R1 2 DEDDEDGDGDGDGATGK 17 0 G3V1U3;F8VQZ7;P50579-3;P50579;F8VY03 G3V1U3 METAP2 Methionine aminopeptidase 2 0 0 ; ; 341.59 1.81E-191 15342900 9210.3 5943.8 6418.1 6748.6 5237.2 6044.5 5813.1 3960 7555 6234.4 FALSE FALSE TRUE 8130.682596 6126.921433 6765.0819 7023.837078 4850.86219 5929.211233 6037.313214 4410.790393 7243.579702 6197.317512 1.311968054 0.988640879 1.091614539 1.13336731 0.782735785 0.956738334 0.974181685 0.71172574 1.16882501 1 12.59742817 -5.77380376 24.69608973 1.132011458 0.871933199 0.560474277 0.111635485 133.1838995 266016.0696 0.020624195 0.037583645 1.68E-06 5.77380376 -0.260078259 CSDVSELS(ph)SSPPGPYHQEPYVCKPEER ddPTM_HeLa_CUDC101_4h_R1 1 CSDVSELSSSPPGPYHQEPYVCKPEER 27 1 Q9Y478;F5H610;F5H2X8 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 0 CS(0.001)DVS(0.019)ELS(0.359)S(0.308)S(0.308)PPGPY(0.004)HQEPYVCKPEER 75.539 5.58E-05 73574000 2921.2 2174.8 2048.7 1981.5 2805.1 2371 2588.4 2315.8 2835 1703.8 TRUE FALSE FALSE 2578.781364 2241.80301 2159.458919 2062.314135 2598.173362 2325.777125 2688.235455 2579.421311 2718.1401 1693.665722 1.522603505 1.323639595 1.275020738 1.21766303 1.534053224 1.373220876 1.587229062 1.522981352 1.60488582 1 10.72593344 -9.398831463 0.8998717 0.974469285 1.422093574 0 0.220348998 0.361083906 0.473303694 0.115050969 0.023435724 3.99E-10 9.398831463 0.447624289 SISTAYLQWS(ph)SLK ddPTM_HeLa_CUDC101_4h_R1 2 SISTAYLQWSSLK 13 0 A0A0J9YXX1;A0A0C4DH38 A0A0J9YXX1 IGHV5-51 1 0 S(0.339)IS(0.065)T(0.065)AY(0.012)LQWS(0.519)SLK;S(0.105)IS(0.105)T(0.105)AY(0.075)LQWS(0.61)S(0.001)LK ; 92.247 0.009891 22458000 3366.1 2624.8 2722.5 3083.3 2932.1 2844 2678.6 2426.5 3084.6 3563.5 TRUE FALSE FALSE 2971.530861 2705.666977 2869.686585 3209.050301 2715.804825 2789.755438 2781.914499 2702.722952 2957.451482 3542.304144 0.838869487 0.763815547 0.810118632 0.905921731 0.766677483 0.787553899 0.785340385 0.762984442 0.834894849 1 11.79047237 -9.39873422 0.324615683 1.096535605 0.779418956 0.161186801 0.065819792 1.262385151 0.163512805 0.149310707 0.020587418 3.99E-10 9.39873422 -0.317116648 DEDNDEDEERLEEEEQNEEEEVDN ddPTM_HeLa_CUDC101_4h_R1 1 DEDNDEDEERLEEEEQNEEEEVDN 24 1 Q9NRF9 Q9NRF9 POLE3 DNA polymerase epsilon subunit 3 0 0 129.2 1.15E-08 9699800 1718.9 1256.8 1083.2 998.14 1101.9 1245.9 1216.8 915.98 1267.4 1255.7 FALSE FALSE TRUE 1517.413148 1295.520518 1141.761069 1038.848464 1020.615032 1222.136533 1263.732384 1020.251461 1215.157236 1248.231041 1.215650868 1.037885196 0.914703313 0.832256553 0.817649136 0.97909481 1.012418649 0.817357867 0.973503459 1 10.28566928 -6.84304776 3.658882953 1.102717816 0.897256783 0.426698213 0.088072167 0.150583081 3.974109278 0.016460419 0.022219517 1.44E-07 6.84304776 -0.205461033 DEDVFVCESR ddPTM_HeLa_CUDC101_4h_R1 1 DEDVFVCESR 10 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5 Q86U86-8 PBRM1 Protein polybromo-1 0 0 123.88 0.021538 2327500 1138.4 1142.2 1203.4 1017.1 1370.4 1223.2 1071.4 1323.7 1449 818.53 FALSE FALSE TRUE 1004.958478 1177.389828 1268.459444 1058.581734 1269.308322 1199.869498 1112.724257 1474.384657 1389.271607 813.6613472 1.235106573 1.447026865 1.558952565 1.301010227 1.559995847 1.474654661 1.367552067 1.812037235 1.707432228 1 9.668284647 -7.685985424 0.326608912 0.933194023 1.606485308 0 0.255605032 0.504838653 0.165463631 0.131090124 0.100900234 2.06E-08 7.685985424 0.673291286 SAAGS(ph)PPAVAAAGSGNGAGGGGGVGCAPAAGAGR ddPTM_HeLa_CUDC101_4h_R1 2 SAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGR 34 0 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 S(0.271)AAGS(0.729)PPAVAAAGSGNGAGGGGGVGCAPAAGAGR;S(0.268)AAGS(0.732)PPAVAAAGSGNGAGGGGGVGCAPAAGAGR ; 153.05 1.38E-23 14162800 2893.8 2428.84 2502.66 2290.64 2778.7 2328.37 2209.82 2569.59 2452.83 2353.76 TRUE FALSE FALSE 2554.593151 2503.669682 2637.96137 2384.0622 2573.720837 2283.960222 2295.053498 2862.101739 2351.723309 2339.759731 1.091818582 1.070054181 1.127449684 1.018934623 1.099993646 0.976151607 0.98089281 1.223246003 1.005113165 1 11.19214467 -9.398291345 1.112521025 0.999828996 1.069858124 0.142836405 0.068969847 0.835551424 1.84258145 0.045406616 0.011462209 4.00E-10 9.398291345 0.070029129 DGPGLERS(ph)PGEPGGAAPER ddPTM_HeLa_CUDC101_4h_R1 1 DGPGLERSPGEPGGAAPER 19 1 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 DGPGLERS(1)PGEPGGAAPER 51.554 0.035261 7876500 591.05 520.88 620.88 561.19 925.05 653.1 652.38 730.17 543.34 1059.6 TRUE FALSE FALSE 521.768015 536.9276954 654.4466509 584.0777539 856.8109045 640.6432056 677.5425151 813.2896014 520.9432952 1053.297452 0.495366256 0.509758848 0.621331277 0.554523086 0.813455784 0.608226294 0.643258477 0.772136683 0.494583267 1 10.0406972 -9.398254642 1.118770815 1.000429607 0.61646815 0 0.181935346 0.241398403 0.539508728 0.072062685 0.01829357 4.00E-10 9.398254642 -0.383961457 GSES(ph)PEMGPEVTPAPR ddPTM_HeLa_CUDC101_4h_R1 2 GSESPEMGPEVTPAPR 16 0 A0A0A0MSQ2;F8W689;P48382-2;P48382;H0Y4B4 A0A0A0MSQ2 RFX5 DNA-binding protein RFX5 1 0 GS(0.002)ES(0.957)PEMGPEVT(0.041)PAPR;GS(0.049)ES(0.951)PEMGPEVTPAPR ; 101.2 0.007881 21897000 2655.3 2561.2 2309.74 2624.5 2697.4 2612.26 2323.89 2181.45 2893.8 3069.7 TRUE FALSE FALSE 2344.049759 2640.107536 2434.611531 2731.538454 2498.418176 2562.435493 2413.523216 2429.77745 2774.516339 3051.441288 0.7681779 0.865200175 0.797856259 0.895163366 0.818766589 0.83974596 0.790945323 0.796272063 0.90924782 1 11.57527512 -9.397757874 1.021985495 1.004359037 0.81963823 0.561481217 0.044478973 0.207080609 0.372057688 0.028763 0.006672914 4.00E-10 9.397757874 -0.184720808 DEELEKDTMDNWDEK ddPTM_HeLa_CUDC101_4h_R1 4 DEELEKDTMDNWDEK 15 1 Q8WU90 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 0 0 ;;; ;;; 136.33 0.00066036 65144000 8135.6 6925.4 6965.51 6336.79 7445.4 7358.82 7053.71 7714.4 7637.9 7569.7 FALSE FALSE TRUE 7181.957301 7138.763365 7342.08654 6595.231686 6896.167675 7218.462769 7325.773958 8592.576113 7323.062529 7524.675088 0.954454141 0.948713836 0.975734693 0.876480593 0.916473814 0.959305576 0.973566815 1.141919885 0.973206477 1 12.87741357 -4.260989474 4.656837764 0.963070875 1.152818762 0.729764459 0.034045866 0.091243603 5.312537233 0.005549191 0.056236311 5.48E-05 4.260989474 0.189747887 S(ph)LSPVAAPPLR ddPTM_HeLa_CUDC101_4h_R1 1 SLSPVAAPPLR 11 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 S(0.942)LS(0.058)PVAAPPLR 91.937 0.022207 9169900 1926.1 1817.9 1817.6 1865.1 1725.6 1920.8 1789.4 1634.7 1907.2 2243.5 TRUE FALSE FALSE 1700.325478 1873.907344 1915.864954 1941.16684 1598.305926 1884.16394 1858.417757 1820.78764 1828.584409 2230.155562 0.762424607 0.840258579 0.859072338 0.870417684 0.71667912 0.844857629 0.833313061 0.816439746 0.819935811 1 11.12292863 -9.397279537 1.02506928 1.004297054 0.815239843 0 0.07008931 0.247642607 0.448315455 0.035238933 0.008206128 4.01E-10 9.397279537 -0.189057211 ES(ph)VSPEDSEK ddPTM_HeLa_CUDC101_4h_R1 1 ESVSPEDSEK 10 0 A0A1W2PP02;P35251-2;P35251 A0A1W2PP02;P35251-2 RFC1 Replication factor C subunit 1 1 0 ES(0.905)VS(0.095)PEDSEK 121.29 0.0045267 295470000 4084.9 3695.3 4239.6 3992.1 3542.3 3869.2 3243.1 3361.2 3417.7 6102.2 TRUE FALSE FALSE 3606.074214 3809.147813 4468.8056 4154.915093 3280.991586 3795.401457 3368.187453 3743.825422 3276.820959 6065.903843 0.594482588 0.627960467 0.736708942 0.684962242 0.540890801 0.6256943 0.555265553 0.617191686 0.540203248 1 12.56650691 -9.397187167 0.593727869 1.077367387 0.613982149 0 0.15388149 0.358817714 0.167949789 0.093476246 0.013316023 4.01E-10 9.397187167 -0.463385239 DEEVHAGLGELLR ddPTM_HeLa_CUDC101_4h_R1 4 DEEVHAGLGELLR 13 0 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PQ34;E9PJH8;E9PIG2;E9PRS3;E9PNX1 P50454 SERPINH1 Serpin H1 0 0 ;;; ;;; 148.89 0.00036603 52181600 33891.4 26385.3 23929.5 22952 23452.8 26612.2 23164 20392 26841.4 27136.6 FALSE FALSE TRUE 29918.70147 27198.19982 25223.20115 23888.08177 21722.73367 26104.61662 24057.44324 22713.34285 25734.98613 26975.1903 1.1091192 1.008267208 0.935051834 0.885557488 0.805285651 0.967726876 0.891835905 0.842008624 0.954024266 1 14.71934552 -6.705713428 2.383776118 1.05164327 0.881367654 0.563277283 0.055639318 0.126991059 1.478644086 0.009115584 0.013164507 1.97E-07 6.705713428 -0.170275617 DEFEFLEK ddPTM_HeLa_CUDC101_4h_R1 1 DEFEFLEK 8 0 A0A3B3IUA7;Q14258 A0A3B3IUA7 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 0 0 133.86 0.028439 2912300 1450.7 1269.1 1058.2 1041.9 1304.8 1234.5 1275.6 1135.2 1459.9 1518.5 FALSE FALSE TRUE 1280.651145 1308.199467 1115.409493 1084.393185 1208.547504 1210.953969 1324.800319 1264.426579 1399.722304 1509.467894 0.848412311 0.866662664 0.738942178 0.718394336 0.800644723 0.80223897 0.877660482 0.837663778 0.927295181 1 10.55982436 -8.575849549 0.617468369 1.000172655 0.801695167 0.587207726 0.051145179 0.352108588 0.269975168 0.033995527 0.01325048 2.66E-09 8.575849549 -0.198477489 DEFEGLFK ddPTM_HeLa_CUDC101_4h_R1 2 DEFEGLFK 8 0 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 ; ; 133.55 0.028602 20800000 5187.8 4410.7 4045.4 3831.6 5115.9 4411.8 4313.1 4078.9 4814.5 4554.6 FALSE FALSE TRUE 4579.693948 4546.588439 4264.106561 3987.86921 4738.510249 4327.652266 4479.457712 4543.225489 4616.044272 4527.509037 1.011526186 1.004214106 0.941821767 0.880808669 1.046604261 0.955857234 0.989386808 1.003471324 1.019554955 1 12.14450181 -6.854345902 10.57375795 1.005554578 0.969402547 0.180025464 0.040714201 0.520827517 55.34932474 0.006391291 0.008403312 1.40E-07 6.854345902 -0.036152031 DEFTNTCPSDKEVEIAYSDVAK ddPTM_HeLa_CUDC101_4h_R1 1 DEFTNTCPSDKEVEIAYSDVAK 22 1 Q9Y696 Q9Y696 CLIC4 Chloride intracellular channel protein 4 0 0 54.047 0.035722 6502400 955.1 652.18 914.67 793.61 829.5 695.89 702.83 799.16 739.77 852.52 FALSE FALSE TRUE 843.1446258 672.2728928 964.1198269 825.9768461 768.3094376 682.6170577 729.9383885 890.1331441 709.2763675 847.4491731 0.994920584 0.793289927 1.137672745 0.974662401 0.90661418 0.805496163 0.861335891 1.050367588 0.836954463 1 9.726983033 -5.771790082 4.8703858 0.991100066 0.894701284 0 0.108586284 0.239294458 14.85703704 0.013546437 0.02612775 1.69E-06 5.771790082 -0.096398781 DEGNYLDDALVR ddPTM_HeLa_CUDC101_4h_R1 2 DEGNYLDDALVR 12 0 Q6P452;P09525-2;P09525 Q6P452 ANXA4 Annexin;Annexin A4 0 0 ; ; 128.28 0.010893 4607900 2843.6 2351.6 1936.79 2711.8 2306.9 2208.5 2214 1949.37 2505.3 3163.7 FALSE FALSE TRUE 2510.277519 2424.050009 2041.498726 2822.398925 2136.724583 2166.376542 2299.394722 2171.278401 2402.030474 3144.882172 0.798210356 0.770791997 0.649149512 0.897457765 0.679429138 0.688857777 0.73115449 0.690416455 0.763790292 1 11.61879025 -9.095292652 0.303449159 1.111574654 0.694108743 0.10815353 0.097742019 1.274630112 0.173408081 0.191046126 0.037605481 8.03E-10 9.095292652 -0.41746591 DEILEWESR ddPTM_HeLa_CUDC101_4h_R1 4 DEILEWESR 9 0 H0YK42;Q13596-2;Q13596;Q13596-3 H0YK42 SNX1 Sorting nexin-1 0 0 ;;; ;;; 195.05 2.73E-15 36174800 9498.2 8595.8 7946.9 7898.2 8647.9 8559.6 8364.8 7351.4 9400 9712.3 FALSE FALSE TRUE 8384.835394 8860.626409 8376.533452 8220.322735 8009.961646 8396.339891 8687.433138 8188.253661 9012.528021 9654.530808 0.868487093 0.917768723 0.867627192 0.851447149 0.829658303 0.869678709 0.899829656 0.848125489 0.933502435 1 13.23699043 -9.476696294 0.454617879 1.045083181 0.862447886 0.590117501 0.03076935 0.679813863 0.164744971 0.058950789 0.006795843 3.34E-10 9.476696294 -0.182635296 GSSPQNT(ph)TTPKPSVEGQQPAAAAACEPVDHAQSESILK ddPTM_HeLa_CUDC101_4h_R1 1 GSSPQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK 38 1 Q27J81-2;Q27J81 Q27J81-2 INF2 Inverted formin-2 1 0 GS(0.059)S(0.176)PQNT(0.228)T(0.228)T(0.228)PKPS(0.082)VEGQQPAAAAACEPVDHAQSESILK 46.033 0.010895 55049000 1044.3 704.78 793.15 641.73 979.78 749.94 847.96 762.09 764.88 459.52 TRUE FALSE FALSE 921.8887371 726.4934364 836.0300881 667.9025232 907.5035814 735.636144 880.6661012 848.8432451 733.3513227 456.7867546 2.018203741 1.590443307 1.830241529 1.462175767 1.986711682 1.610458571 1.927958927 1.858292161 1.605456628 1 8.835377007 -9.396810216 1.011477174 0.978778473 1.794892678 0.263645402 0.250437568 0.219116377 0.384019166 0.133857491 0.030775313 4.01E-10 9.396810216 0.816114205 RPPS(ph)PDVIVLS(ph)DNEQPS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 2 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 3 0 RPPS(1)PDVIVLS(0.971)DNEQPS(0.566)S(0.463)PR;RPPS(1)PDVIVLS(0.969)DNEQPS(0.56)S(0.471)PR ; 98.23 0.00042615 201078000 5376.1 5050.8 4726.5 4497.8 5974.7 4995.2 4756.5 4368.9 5547.1 5813.6 TRUE FALSE FALSE 4745.921708 5206.409161 4982.028887 4681.239725 5533.958284 4899.924883 4939.959798 4866.237916 5318.44619 5779.020449 0.821232897 0.900915511 0.862088814 0.810040346 0.957594515 0.847881562 0.854809192 0.842052379 0.920302366 1 12.49660926 -9.39669298 1.016920885 1.003508726 0.860659758 0.379363088 0.046090947 0.28384595 0.504065493 0.030414805 0.007031999 4.01E-10 9.39669298 -0.142848969 RVVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_HeLa_CUDC101_4h_R1 4 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 RVVLGDGVQLPPGDY(0.24)S(0.225)T(0.227)T(0.245)PGGT(0.132)LFS(0.278)T(0.278)T(0.295)PGGT(0.082)R;RVVLGDGVQLPPGDY(0.247)S(0.174)T(0.099)T(0.289)PGGT(0.268)LFS(0.252)T(0.252)T(0.348)PGGT(0.07)R;RVVLGDGVQLPPGDY(0.013)S(0.06)T(0.41)T(0.47)PGGT(0.052)LFS(0.272)T(0.239)T(0.437)PGGT(0.046)R;RVVLGDGVQLPPGDY(0.018)S(0.269)T(0.31)T(0.337)PGGT(0.16)LFS(0.274)T(0.274)T(0.328)PGGT(0.029)R ;;; 68.439 8.59E-06 223626000 4758.65 4473.35 4345.41 3701.41 4709.46 5005.48 4160.99 4184.15 5194.53 5210.19 TRUE FALSE FALSE 4200.848261 4611.168611 4580.336009 3852.369499 4362.052518 4910.008809 4321.480778 4660.456723 4980.409275 5179.199558 0.811099903 0.890324568 0.884371409 0.743815614 0.842225226 0.948024642 0.834391633 0.899841118 0.961617566 1 12.33851343 -9.396470972 1.027725337 1.003270649 0.853180173 0.454515853 0.053760485 0.362400907 0.660457221 0.040966986 0.00957659 4.01E-10 9.396470972 -0.150090476 EKKEESHSNDQS(ph)PQIR ddPTM_HeLa_CUDC101_4h_R1 1 EKKEESHSNDQSPQIR 16 2 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 EKKEES(0.004)HS(0.063)NDQS(0.933)PQIR 68.411 0.014425 5598700 2813.5 2095.5 3174.5 3223.6 3110.1 2860.1 2453.7 1656.7 3120.5 3386.4 TRUE FALSE FALSE 2483.705795 2160.059871 3346.123072 3355.072342 2880.674119 2805.548358 2548.340031 1845.292031 2991.871669 3366.257542 0.737824056 0.64167992 0.994018738 0.996677259 0.855749771 0.833432476 0.757024678 0.548173159 0.88878276 1 11.71692984 -9.396366583 1.121822703 1.000029379 0.800493016 0.142745806 0.136141808 0.615167461 1.38479197 0.095434914 0.0243593 4.01E-10 9.396366583 -0.199536363 SQAPLES(ph)SLDSLGDVFLDSGRK ddPTM_HeLa_CUDC101_4h_R1 1 SQAPLESSLDSLGDVFLDSGRK 22 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 SQAPLES(0.5)S(0.5)LDSLGDVFLDSGRK 140.13 2.49E-07 7547400 2558.1 2870 2116.9 2200.1 3197.8 2891.7 2957.2 2060.6 3825.3 3812.1 TRUE FALSE FALSE 2258.243396 2958.421298 2231.346017 2289.829588 2961.904665 2836.54564 3071.260195 2295.170375 3667.619515 3789.42546 0.595932924 0.780704444 0.588834915 0.604268275 0.781623678 0.748542403 0.810481754 0.605677668 0.967856356 1 11.88776341 -9.396246178 1.047333505 1.005387423 0.687490919 0.666259967 0.083180325 0.266062351 0.507751818 0.064161474 0.015292458 4.02E-10 9.396246178 -0.317896503 DELEVIHLIEEHR ddPTM_HeLa_CUDC101_4h_R1 1 DELEVIHLIEEHR 13 0 P10155-3;P10155-5;P10155-4;P10155 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 0 0 158.34 5.57E-05 3008500 2137.5 2044.6 2232.3 2083.5 2398.6 2227.2 2108.9 1685.4 2136.8 2580.4 FALSE FALSE TRUE 1886.94549 2107.591703 2352.98489 2168.474136 2221.660057 2184.719871 2190.240979 1877.259123 2048.7202 2565.051666 0.735636446 0.821656628 0.91732456 0.845391991 0.866126825 0.851725484 0.853877919 0.73186016 0.798705237 1 11.32477217 -9.528255331 1.288708495 0.999919596 0.822509885 0 0.081358344 0.27488479 0.818056558 0.042504535 0.010189708 2.96E-10 9.528255331 -0.177409712 DELGDYLK(ac)PK ddPTM_HeLa_CUDC101_4h_R1 1 DELGDYLKPK 10 1 Q9H2W6 Q9H2W6 MRPL46 "39S ribosomal protein L46, mitochondrial" 0 1 DELGDYLK(1)PK 112.36 0.0051872 331700 362.59 276.04 103.11 109.03 363.65 290.23 264.66 231.5 284.12 399.99 FALSE TRUE FALSE 320.0877499 284.5444652 108.6844385 113.4767147 336.824264 284.6943463 274.8680249 257.8530242 272.4084533 397.6108417 0.805027721 0.71563558 0.27334375 0.28539643 0.847120422 0.716012534 0.69129912 0.648506019 0.685113243 1 8.635213285 -7.546464846 1.498675017 0.935108162 0.589480394 0.207963286 0.192733942 0.27750787 1.252373739 0.039630648 0.041829729 2.84E-08 7.546464846 -0.345627769 ITHS(ph)PDSVK ddPTM_HeLa_CUDC101_4h_R1 2 ITHSPDSVK 9 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 IT(0.002)HS(0.995)PDS(0.003)VK;IT(0.02)HS(0.979)PDS(0.001)VK ; 164.66 3.15E-05 87859000 8628.7 6813.3 7171.8 7239 9115.8 6931 7498.9 5929.6 7880.9 6832.7 TRUE FALSE FALSE 7617.256866 7023.209697 7559.529202 7534.23771 8443.345595 6798.802723 7788.135085 6604.601696 7556.045966 6792.058797 1.121494542 1.034032524 1.112995253 1.109271568 1.243120216 1.000992913 1.146653072 0.972400548 1.112482414 1 12.72963323 -9.396236401 0.903823816 0.994323608 1.097928499 0 0.080959645 0.835966135 1.109328207 0.061719872 0.012677537 4.02E-10 9.396236401 0.103604891 SPQEEDFRCPS(ph)DEDFR ddPTM_HeLa_CUDC101_4h_R1 2 SPQEEDFRCPSDEDFR 16 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 SPQEEDFRCPS(1)DEDFR;SPQEEDFRCPS(1)DEDFR ; 66.738 0.022328 60609000 4470.1 3551.8 3493 3638.2 3823.6 4352.4 3389.2 3285.4 4872.1 3174.1 TRUE FALSE FALSE 3946.121654 3661.226748 3681.842146 3786.581522 3541.540646 4269.385222 3519.922579 3659.396656 4671.269976 3155.220312 1.25066438 1.16037119 1.166904933 1.200100515 1.122438466 1.353117944 1.115586942 1.15979117 1.480489321 1 11.62352503 -9.396226999 1.026012714 0.995566209 1.195005101 0 0.163064869 0.32460899 0.589244956 0.048722853 0.011374611 4.02E-10 9.396226999 0.199438892 QDDS(ph)PPRPIIGPALPPGFIK ddPTM_HeLa_CUDC101_4h_R1 2 QDDSPPRPIIGPALPPGFIK 20 1 A0A0A0MRI1;Q8IXQ4-4;Q8IXQ4 A0A0A0MRI1 GPALPP1 GPALPP motifs-containing protein 1 1 0 QDDS(1)PPRPIIGPALPPGFIK;QDDS(1)PPRPIIGPALPPGFIK ; 109.32 9.12E-05 205060000 4861 4242.7 4297 4068.7 4969.8 4991.1 4298.5 4511.4 4439.2 5307.3 TRUE FALSE FALSE 4291.200949 4373.412558 4529.308818 4234.639172 4603.187755 4895.903083 4464.294585 5024.95954 4256.214297 5275.731944 0.813384947 0.828967924 0.858517617 0.802663823 0.87252116 0.928004519 0.846194354 0.952466803 0.806753327 1 12.36515555 -9.396015504 1.110992903 1.000323909 0.857737226 0 0.074073896 0.290594831 0.639284824 0.032103803 0.008120065 4.02E-10 9.396015504 -0.142586683 DELHIVEAEAMNYEGSPIK ddPTM_HeLa_CUDC101_4h_R1 4 DELHIVEAEAMNYEGSPIK 19 0 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 0 0 ;;; ;;; 202.81 2.05E-17 54145300 18731.9 14357.4 14523.8 14032.2 14335.2 14752.6 14544.7 12052.7 17636.4 17366.6 FALSE FALSE TRUE 16536.17508 14799.73448 15309.00056 14604.49377 13277.72086 14471.21873 15105.69395 13424.73065 16909.42013 17263.30269 0.957880156 0.857294502 0.886794424 0.845984921 0.769129818 0.838264786 0.875017615 0.777645558 0.979500877 1 14.07542088 -7.150699998 0.862929635 0.990372373 0.82052841 0.802237304 0.033457722 0.150139395 0.223921225 0.007507122 0.009524168 7.07E-08 7.150699998 -0.169843963 SCTPSPDQIS(ph)HRASLEDAPVDDLTR ddPTM_HeLa_CUDC101_4h_R1 1 SCTPSPDQISHRASLEDAPVDDLTR 25 1 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 SCT(0.005)PS(0.105)PDQIS(0.848)HRAS(0.042)LEDAPVDDLTR 96.881 3.98E-06 18529000 1011.8 1037 624.62 689.84 1013.9 793.84 899.38 625.73 816.6 694.19 TRUE FALSE FALSE 893.1983378 1068.948741 658.3888466 717.9746569 939.106617 778.6988246 934.0693879 696.9605739 782.9394024 690.060927 1.294376051 1.549064291 0.954102487 1.040451109 1.360903915 1.128449379 1.353604227 1.009998605 1.134594601 1 9.430579936 -9.395548048 1.182823738 1.002810821 1.221377738 0.074731359 0.179599718 0.635650903 1.621832493 0.109822191 0.029558275 4.02E-10 9.395548048 0.218566917 IHVQSSS(ph)DSSDEPAEKR ddPTM_HeLa_CUDC101_4h_R1 1 IHVQSSSDSSDEPAEKR 17 1 B4DMI0;E9PBM2;Q8WUF8-2;Q8WUF8-4;Q8WUF8-3;Q8WUF8 B4DMI0 FAM172A Protein FAM172A 1 0 IHVQS(0.022)S(0.125)S(0.592)DS(0.214)S(0.048)DEPAEKR 89.604 0.003846 8368100 2071.1 1944.4 2385.2 2092 2151.5 1814.9 1687.3 1650.2 2651.1 2911.3 TRUE FALSE FALSE 1828.328798 2004.304659 2514.151127 2177.320802 1992.788131 1780.283806 1752.379726 1838.052098 2541.820536 2893.983458 0.631768918 0.692576405 0.868751036 0.752361178 0.688596932 0.615167236 0.605525136 0.63512875 0.878312047 1 11.49884096 -9.39443757 0.759890978 1.035673726 0.683461268 0.583534434 0.082802254 0.417285804 0.358875062 0.095749031 0.016676845 4.03E-10 9.39443757 -0.352212458 QPVPKQIERY(ph)S(ph)RFS(ph)PS(ph)PLS(ph)IK ddPTM_HeLa_CUDC101_4h_R1 1 QPVPKQIERYSRFSPSPLSIK 21 3 Q15120;Q15120-2 Q15120 PDK3 "[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial" 5 0 QPVPKQIERY(1)S(1)RFS(1)PS(1)PLS(1)IK 49.606 0.0027407 0 275.97 229.29 282.27 255.85 294.75 286.53 367.02 125.48 412.95 347.47 TRUE FALSE FALSE 243.6212149 236.3541531 297.53037 266.2846689 273.0068797 281.0649176 381.1760843 139.764136 395.9280262 345.403233 0.705324072 0.684284716 0.861400073 0.770938554 0.790400476 0.81372984 1.103568374 0.404640497 1.146277708 1 8.432137776 -9.39428449 1.111274371 1.000417468 0.775061953 0.315538318 0.171107363 0.597786002 1.31674364 0.104299265 0.026454024 4.03E-10 9.39428449 -0.225355515 DEPSVAAMVYPFTGDHK ddPTM_HeLa_CUDC101_4h_R1 1 DEPSVAAMVYPFTGDHK 17 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 0 103.13 0.0021207 10711000 862.02 955.13 661.25 661.91 1120.4 840.77 866.45 973.08 1008.5 713.34 FALSE FALSE TRUE 760.9753223 984.5564232 696.9991752 688.9055508 1037.750324 824.7337131 899.8692667 1083.851494 966.9292031 709.097022 1.073161075 1.388465038 0.982939081 0.971525094 1.463481431 1.163075979 1.269035462 1.52849534 1.363606352 1 9.469839227 -1 0.230071889 1.003087357 3.551861747 0.117572119 0.187169065 32.62168144 0.396831574 0.098243581 31.64177801 0.1 1 2.54877439 DESANQEEPEAR ddPTM_HeLa_CUDC101_4h_R1 2 DESANQEEPEAR 12 0 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 0 0 ; ; 160.72 0.00064058 17656300 2849.6 2396.2 2623.8 2897.4 2690.9 2374.6 2329.9 1968.75 3376.7 3408.5 FALSE FALSE TRUE 2515.574208 2470.024082 2765.650565 3015.568496 2492.397668 2329.308461 2419.765023 2192.864542 3237.510997 3388.22609 0.742445793 0.729002143 0.816253252 0.890013953 0.735605477 0.687471379 0.7141687 0.647201362 0.955517994 1 11.72631443 -13.52287875 0.197747317 2.204426393 0.695843907 0.708058005 0.061070553 21.51210946 0.25968972 9.973918591 0.070383715 3.00E-14 13.52287875 -1.508582485 DESLKVDEHLAK ddPTM_HeLa_CUDC101_4h_R1 1 DESLKVDEHLAK 12 1 D6RA82;P12429;D6RFJ9 D6RA82 ANXA3 Annexin;Annexin A3 0 0 72.152 0.029205 8138400 7524.1 6566.4 7577.3 6629.7 8478.7 7826.7 7423 8027.1 7701.8 7958.2 FALSE FALSE TRUE 6642.136404 6768.703001 7986.951758 6900.087822 7853.243193 7677.418738 7709.307597 8940.872617 7384.328544 7910.864272 0.839622091 0.855621177 1.0096181 0.872229327 0.992716209 0.970490514 0.974521535 1.130201747 0.933441441 1 12.9496196 -1 0.716443253 0.922380811 29.36014601 0.526678928 0.056803558 218.3364152 1.014175164 0.011663008 9985.599102 0.1 1 28.4377652 S(ph)PVREPIDNLTPEER ddPTM_HeLa_CUDC101_4h_R1 4 SPVREPIDNLTPEER 15 1 Q14498-2;Q14498;G3XAC6;Q5QP22;Q5QP23;Q14498-3;H0Y4X3 Q14498-2 RBM39 RNA-binding protein 39 1 0 S(1)PVREPIDNLTPEER;S(0.995)PVREPIDNLT(0.005)PEER;S(0.907)PVREPIDNLT(0.093)PEER;S(0.996)PVREPIDNLT(0.004)PEER ;;; 146.1 0.0015254 59596100 3760.58 3441.79 3021.49 3517.14 3437.39 3325.6 3127.21 3236.56 3913.61 3810.2 TRUE FALSE FALSE 3319.770513 3547.82747 3184.840889 3660.584172 3183.820588 3262.169721 3247.827537 3604.996908 3752.289339 3787.536761 0.876498559 0.936711033 0.840873921 0.96648149 0.840604538 0.861290577 0.857503898 0.951805127 0.99069384 1 11.88704418 -9.39426923 0.645901337 1.018902554 0.887188442 0.475304219 0.043496097 0.736617993 0.423474469 0.057463633 0.008723949 4.03E-10 9.39426923 -0.131714113 MEIDESNAGSSKEEAGET(ph)SPADESGAPK ddPTM_HeLa_CUDC101_4h_R1 2 MEIDESNAGSSKEEAGETSPADESGAPK 28 1 Q9UKY1 Q9UKY1 ZHX1 Zinc fingers and homeoboxes protein 1 1 0 MEIDES(0.001)NAGS(0.003)S(0.008)KEEAGET(0.494)S(0.494)PADESGAPK;MEIDES(0.24)NAGS(0.057)S(0.057)KEEAGET(0.306)S(0.306)PADES(0.034)GAPK ; 74.408 6.79E-05 6528400 2943.1 2684 2255.87 2156.7 2490.6 2464.8 1946.92 2378.3 2590.8 1888.86 TRUE FALSE FALSE 2598.114279 2766.690859 2377.829156 2244.659548 2306.8734 2417.788047 2022.013357 2649.036059 2484.006127 1877.624977 1.383723753 1.473505568 1.266402602 1.195478104 1.228612438 1.287684216 1.076899478 1.410844067 1.322951153 1 10.87469322 -9.394048294 1.143071786 1.001473268 1.290995692 0 0.145266927 0.33329899 0.785104665 0.075406097 0.019672463 4.04E-10 9.394048294 0.289522423 DETEFYLGK ddPTM_HeLa_CUDC101_4h_R1 1 DETEFYLGK 9 0 F8WBS5;F8WB72;C9K025;P18077 F8WBS5 RPL35A 60S ribosomal protein L35a 0 0 124.23 0.025914 8210000 1747.4 1957.9 1626.4 1951 1556.3 1767.9 1685.5 1465.3 1639.4 2002.9 FALSE FALSE TRUE 1542.572421 2018.220578 1714.328104 2030.570213 1441.49485 1734.180253 1750.5103 1632.103829 1571.823238 1990.986662 0.774777878 1.013678603 0.861044494 1.019881374 0.7240103 0.871015505 0.879217492 0.81974624 0.789469497 1 10.95926784 -5.758358384 24.99985515 0.906344544 0.830871574 0.177160988 0.090385961 142.4074823 1155503.057 0.014718437 0.028463503 1.74E-06 5.758358384 -0.075472971 DETEFYLGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 DETEFYLGKR 10 1 F8WBS5;F8WB72;C9K025;P18077 F8WBS5 RPL35A 60S ribosomal protein L35a 0 1 DETEFYLGK(1)R 126.31 0.002363 823310 245.23 247.06 109.25 280.21 286.08 391.26 306.29 300.84 347.15 130.32 FALSE TRUE FALSE 216.4845111 254.6716258 115.1563855 291.638175 264.9764484 383.7973674 318.1037079 335.0864096 332.8403301 129.5448508 1.671116295 1.965895395 0.888930627 2.251252544 2.045441765 2.962660151 2.455548838 2.586643988 2.569305749 1 7.017307862 -2.612806693 0.143362976 0.712595262 6.019607551 0.116863916 0.608721496 19.14953326 0.278881788 1.1085232 19.65838822 0.002438896 2.612806693 5.307012289 NGSPSLGRDSPDT(ph)MLASPQEEGEGPSSTTESSER ddPTM_HeLa_CUDC101_4h_R1 2 NGSPSLGRDSPDTMLASPQEEGEGPSSTTESSER 34 1 Q5VVD7;Q8IWE5 Q5VVD7 PLEKHM2 Pleckstrin homology domain-containing family M member 2 1 0 NGS(0.001)PS(0.008)LGRDS(0.229)PDT(0.749)MLAS(0.013)PQEEGEGPSSTTESSER;NGS(0.008)PS(0.019)LGRDS(0.279)PDT(0.657)MLAS(0.037)PQEEGEGPSSTTESSER ; 67.793 5.59E-05 16826100 3226.98 3138.06 3393.3 3213.9 3472.2 2850.98 2610.19 2698.08 3616.1 4090.2 TRUE FALSE FALSE 2848.718296 3234.739909 3576.752062 3344.976734 3216.062724 2796.602307 2710.865903 3005.218521 3467.042827 4065.871308 0.70064153 0.795583447 0.879701247 0.822696165 0.790989798 0.687823616 0.66673677 0.73913272 0.852718289 1 11.98934884 -9.394041929 0.903986012 1.013999577 0.757867751 0.377185183 0.076211679 0.35251165 0.468525542 0.064295898 0.013253176 4.04E-10 9.394041929 -0.256131826 DETNYGIPQR ddPTM_HeLa_CUDC101_4h_R1 2 DETNYGIPQR 10 0 D6R9L0;D6R9Z1;D6RFX4;D6RGK8;D6R909;D6RAU2;E9PD14;D6RBD0;D6RFZ9;D6RAC2;P63244;D6REE5;D6RHH4 D6R9L0;D6RAC2 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed" 0 0 ; ; 148.69 0.003188 18161300 4115.5 3237.2 3596.1 3541.5 3807.8 3272.9 3193.8 3417.6 4131.6 5412.4 FALSE FALSE TRUE 3633.087329 3336.934295 3790.516044 3685.937678 3526.90618 3210.474886 3316.985936 3806.64577 3961.293699 5380.206804 0.675269086 0.620224169 0.704529804 0.685092193 0.655533571 0.596719606 0.616516438 0.707527779 0.736271642 1 12.39344591 -9.134653503 0.553368523 1.051782709 0.645373622 0.332328053 0.088837746 0.232435574 0.107580846 0.048813091 0.009401878 7.33E-10 9.134653503 -0.406409087 DEVQEVVYFSAADHEPESK ddPTM_HeLa_CUDC101_4h_R1 1 DEVQEVVYFSAADHEPESK 19 0 B8ZZP4;C9J7U9;C9K052;Q12765;Q12765-2 B8ZZP4 SCRN1 Secernin-1 0 0 59.574 0.032008 4702500 2832.5 2219.8 1885.6 1905 2563.8 2560.8 2477.9 2240.7 2501.5 2522.9 FALSE FALSE TRUE 2500.478644 2288.189407 1987.54124 1982.694134 2374.673582 2511.957007 2573.473433 2495.772231 2398.387111 2507.893679 0.997043322 0.912394902 0.792514155 0.790581415 0.946879687 1.001620215 1.026149336 0.995166682 0.956335243 1 11.29226047 -5.179677706 5.376980702 0.957146946 1.010781869 0.08058706 0.078036938 0.575704291 28.37358494 0.013668129 0.035656091 6.61E-06 5.179677706 0.053634923 EAPS(ph)PTLRR ddPTM_HeLa_CUDC101_4h_R1 4 EAPSPTLRR 9 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 EAPS(0.978)PT(0.022)LRR;EAPS(0.969)PT(0.031)LRR;EAPS(0.996)PT(0.004)LRR;EAPS(0.995)PT(0.005)LRR ;;; 96.067 0.011426 185297000 4583.62 3583.01 4080.4 3577.79 4614.8 3894.12 3706.5 3915 3694.92 3212.22 TRUE FALSE FALSE 4046.335012 3693.398291 4300.998767 3723.707741 4274.375398 3819.846149 3849.460947 4360.667775 3542.613834 3193.113573 1.267206731 1.156676143 1.346960786 1.166168273 1.33862304 1.196276318 1.205550902 1.365647565 1.109454378 1 11.64074815 -9.393932758 0.563665326 0.943689082 1.259405589 0.489805117 0.078799874 0.643730587 0.266877348 0.110448483 0.015314059 4.04E-10 9.393932758 0.315716508 FCGVNETENEDNTNRDS(ph)PIFDYSPR ddPTM_HeLa_CUDC101_4h_R1 1 FCGVNETENEDNTNRDSPIFDYSPR 25 1 F8W9J4;Q03001;Q03001-9 F8W9J4 DST Dystonin 1 0 FCGVNET(0.002)ENEDNT(0.1)NRDS(0.887)PIFDY(0.01)S(0.002)PR 64.349 0.0016853 12165000 383.59 427.77 205.35 273.53 338.71 191.19 306.34 328.79 310.9 215.72 TRUE FALSE FALSE 338.6261617 440.9490867 216.4518421 284.6857357 313.7240381 187.5433693 318.1556364 366.2181246 298.0845704 214.4368878 1.579141374 2.056311725 1.009396491 1.327596845 1.463013389 0.87458539 1.483679602 1.707813093 1.390080659 1 7.744409292 -9.393755685 1.185536604 1.005947629 1.435788696 0.030003232 0.335635473 0.597590749 1.533818897 0.203003451 0.054898584 4.04E-10 9.393755685 0.429841067 DEYRQDYDAGR ddPTM_HeLa_CUDC101_4h_R1 1 DEYRQDYDAGR 11 1 P52298-3;P52298;C9JQX9;B3KSB0;P52298-2 P52298-3 NCBP2 Nuclear cap-binding protein subunit 2 0 0 104.07 0.012281 47445000 4066.5 3992.2 3804 4183.3 4668.1 4333.1 3975.8 4073.8 4353.9 4378 FALSE FALSE TRUE 3589.831034 4115.19495 4009.655746 4353.913056 4323.743563 4250.453337 4129.147938 4537.544925 4174.430399 4351.959461 0.824876947 0.945595883 0.921344921 1.0004489 0.993516507 0.976675765 0.948802022 1.042644116 0.959207097 1 12.0874494 -6.270111277 20.79569861 0.918050055 0.989180903 0.281735009 0.047593557 79.16298325 189838.5272 0.010382531 0.016063947 5.37E-07 6.270111277 0.071130849 DLGYGK(ac)GYK ddPTM_HeLa_CUDC101_4h_R1 1 DLGYGKGYK 9 1 Q96S55-2;Q96S55;Q96S55-4;Q96S55-3 Q96S55-2 WRNIP1 ATPase WRNIP1 0 1 DLGYGK(1)GYK 93.649 0.022419 0 176.22 354.87 313.99 290.99 550.43 569 442.12 562.87 208.75 188.46 FALSE TRUE FALSE 155.5637587 365.8031241 330.9652492 302.85783 509.8258755 558.147273 459.1727165 626.9448456 200.1452366 187.3390315 0.830386265 1.952626322 1.766664674 1.616629634 2.72140766 2.979343218 2.451025356 3.346578876 1.068358446 1 7.549507702 -6.129899096 0.633924126 0.895233531 3.10932079 0.832659603 0.340507861 0.216050313 0.163155153 0.075479927 0.225903115 7.41E-07 6.129899096 2.214087258 DFEEYPEHR ddPTM_HeLa_CUDC101_4h_R1 2 DFEEYPEHR 9 0 O14980 O14980 XPO1 Exportin-1 0 0 ; ; 160.82 5.96E-05 16154400 19235.7 11596.1 13455.1 12219.5 12037.8 12805.4 11430.3 9297.8 15544.3 11860.5 FALSE FALSE TRUE 16980.92041 11953.3621 14182.52341 12717.86403 11149.79548 12561.15833 11871.1705 10356.22397 14903.55737 11789.95322 1.440287344 1.013860011 1.202932967 1.078703519 0.945703114 1.065412059 1.006888686 0.878393983 1.264089611 1 13.52527037 -6.107307803 1.508009499 1.199474627 0.977147484 0.379841431 0.125234164 0.435903314 1.952233233 0.02845183 0.056873932 7.81E-07 6.107307803 -0.222327143 DFEPYDFTLDD ddPTM_HeLa_CUDC101_4h_R1 2 DFEPYDFTLDD 11 0 Q69YN2-2;Q69YN2-3;Q69YN2 Q69YN2-2 CWF19L1 CWF19-like protein 1 0 0 ; ; 151.04 0.0032645 37766000 17603.2 16018.5 15244.2 14653 16801.2 14498 15277.4 14097.6 16656 15563.6 FALSE FALSE TRUE 15539.77958 16512.011 16068.34756 15250.61268 15561.80895 14221.47481 15866.65444 15702.4138 15969.43263 15471.02702 1.004443956 1.06728603 1.038608978 0.985753089 1.005867867 0.919232756 1.02557215 1.014956136 1.032215419 1 13.91728135 DFFHGLR ddPTM_HeLa_CUDC101_4h_R1 2 DFFHGLR 7 0 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 0 0 ; ; 124.37 0.010575 16501400 25928 18088.3 17502.9 19212.2 19474.2 19103.9 18605 17377.7 17100.6 14502 FALSE FALSE TRUE 22888.75914 18645.57908 18449.15972 19995.75656 18037.62706 18739.52494 19322.60108 19355.90712 16395.70603 14415.74146 1.58776149 1.293417972 1.279792633 1.387077912 1.251245183 1.299934866 1.34038205 1.342692444 1.137347397 1 13.81535742 -9.580778599 1.376993289 1.000742545 1.373196351 0.537741172 0.099106753 0.236051331 0.805137178 0.080669844 0.018983875 2.63E-10 9.580778599 0.372453807 DFFQSYGNVVELR ddPTM_HeLa_CUDC101_4h_R1 2 DFFQSYGNVVELR 13 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 0 ; ; 146.5 1.71E-05 0 732.19 694.47 811.25 703.89 729.16 880.36 731.78 513.83 706.75 983.69 FALSE FALSE TRUE 646.3637981 715.8657976 855.1086289 732.5976767 675.3713195 863.5685998 760.0049997 572.3223302 677.6174659 977.8389681 0.661012518 0.73208966 0.87448819 0.749200738 0.690677444 0.883139891 0.777229201 0.585293028 0.692974496 1 9.93345309 -9.419034925 1.094622884 1.002991447 0.744401362 0 0.126510534 0.31550727 0.663662344 0.063573056 0.015310424 3.81E-10 9.419034925 -0.258590085 DFGEEHPFYDR ddPTM_HeLa_CUDC101_4h_R1 2 DFGEEHPFYDR 11 0 Q68CQ4 Q68CQ4 DIEXF Digestive organ expansion factor homolog 0 0 ; ; 152.67 0.00041853 26828000 13929.2 10814 10434.8 11192.1 12836.1 12072.6 11719.4 10806.2 11085 12247 FALSE FALSE TRUE 12296.44029 11147.16652 10998.93685 11648.56221 11889.20648 11842.33527 12171.42118 12036.33413 10628.07161 12174.1543 1.010044722 0.915641962 0.903466194 0.95682722 0.976594036 0.972743977 0.999775499 0.988679282 0.873002867 1 13.57153394 -7.3061264 24.98065646 1.004743348 0.959638112 0 0.050416935 390.9663059 218554.5502 0.005375863 0.006147545 4.94E-08 7.3061264 -0.045105236 DFLIPIGK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 1 DFLIPIGKAK 10 1 P11177-3;P11177-2;P11177;F8WF02;C9J634 P11177-3 PDHB "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial" 0 1 DFLIPIGK(1)AK 85.731 0.033013 279840 679.02 721.6 565.03 539.88 546.48 614.83 484.36 461.17 499.18 620.47 FALSE TRUE FALSE 599.4263049 743.8316407 595.5772309 561.89864 506.1672591 603.1031421 503.0419274 513.6677287 478.6035891 616.7794168 0.971864963 1.20599297 0.965624362 0.911020414 0.820661723 0.977826311 0.815594544 0.832822423 0.775972051 1 9.26861081 -6.221303371 3.282079595 1.005513418 0.867772585 0.215118742 0.106644622 0.193794428 4.262641024 0.012122395 0.020382114 6.01E-07 6.221303371 -0.137740834 GNS(ph)SDHEGCWNEESWTFSQSGTSGSK ddPTM_HeLa_CUDC101_4h_R1 1 GNSSDHEGCWNEESWTFSQSGTSGSK 26 0 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 1 0 GNS(0.47)S(0.47)DHEGCWNEES(0.055)WT(0.004)FS(0.001)QS(0.001)GTSGSK 44.815 0.036005 4715200 1249 888.81 739.37 773.32 1447.6 908.16 992.45 1005.4 1087.2 545.33 TRUE FALSE FALSE 1102.594113 916.1931826 779.3425787 804.8593322 1340.813432 890.8383611 1030.729129 1119.850672 1042.385156 542.0863529 2.033982423 1.690124051 1.437672383 1.484743764 2.473431447 1.643351389 1.901411322 2.06581602 1.922913481 1 9.082378877 -9.393213758 0.875064276 0.943149898 1.845321128 0 0.406135603 0.439782162 0.53914689 0.278112779 0.055568233 4.04E-10 9.393213758 0.90217123 RSPQQTVPYVVPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 RSPQQTVPYVVPLSPK 16 1 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 0 RSPQQTVPYVVPLS(1)PK;RSPQQTVPYVVPLS(1)PK ; 112.57 0.00073074 101392000 5516.5 4660.4 4776.7 4901.1 5428.6 4598.1 4412.8 4465.4 5886.4 6161.8 TRUE FALSE FALSE 4869.864232 4803.9814 5034.942851 5100.988042 5028.142993 4510.398903 4583.003174 4973.723086 5643.760101 6125.14934 0.79506049 0.784304371 0.822011444 0.832794069 0.82090129 0.736373703 0.748227173 0.812016624 0.921407755 1 12.5805293 -9.393025503 0.4909698 1.058383076 0.784855711 0.735915178 0.038600889 0.491983826 0.148575069 0.066754339 0.008717488 4.05E-10 9.393025503 -0.273527365 SPPVLGSAAAS(ph)PVHLK ddPTM_HeLa_CUDC101_4h_R1 1 SPPVLGSAAASPVHLK 16 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 SPPVLGS(0.051)AAAS(0.949)PVHLK 109.67 0.0017765 9612200 852.73 874.32 732.9 885.58 787.12 789.32 823.14 761.71 743.32 1054.8 TRUE FALSE FALSE 752.7742821 901.2567629 772.5227909 921.6977802 729.0557258 774.2650361 854.8887855 848.4199875 712.680035 1048.526003 0.717935731 0.859546411 0.736770275 0.879041414 0.695314874 0.738431888 0.815324354 0.809154933 0.679697054 1 10.03414692 -9.392773222 0.98110753 1.007541952 0.777424941 0 0.114088491 0.268509254 0.437463105 0.045601221 0.010227746 4.05E-10 9.392773222 -0.230117011 DFPYEEDSRPR ddPTM_HeLa_CUDC101_4h_R1 1 DFPYEEDSRPR 11 1 H0Y6J6;Q5W012;Q96I25;Q5W011;Q5W010 H0Y6J6 RBM17 Splicing factor 45 0 0 169.58 1.17E-06 13740000 2569.1 2147 2495 1878.1 2284.2 2585.7 2169.1 2173.3 2157.8 2816.4 FALSE FALSE TRUE 2267.953993 2213.146525 2629.887247 1954.697036 2115.699117 2536.382081 2252.762914 2420.699687 2068.854571 2799.647928 0.810085429 0.790508872 0.939363561 0.698193875 0.755701849 0.905964659 0.804659361 0.864644323 0.738969551 1 11.4510297 -9.206557061 0.722058883 1.013762684 0.818201271 0 0.104537069 0.5278443 0.443285888 0.062248786 0.013485448 6.22E-10 9.206557061 -0.195561413 QPSSPY(ph)EDKDKDK ddPTM_HeLa_CUDC101_4h_R1 2 QPSSPYEDKDKDK 13 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QPSS(0.003)PY(0.997)EDKDKDK;QPS(0.002)S(0.031)PY(0.967)EDKDKDK ; 101.45 0.00827 51386000 11152.1 8524.7 8873.7 10160.7 8539.2 9107.6 8766 7207.9 10862.6 13318.8 TRUE FALSE FALSE 9844.867743 8787.335903 9353.439063 10575.09726 7909.280228 8933.887704 9104.107556 8028.418201 10414.83903 13239.57919 0.743593705 0.66371716 0.706475556 0.798748745 0.597396648 0.674786379 0.687643272 0.60639527 0.786644264 1 13.69256965 -9.392650303 0.309037508 1.161287635 0.641863528 0.423458044 0.084399343 1.035812801 0.123175604 0.193918124 0.02775983 4.05E-10 9.392650303 -0.519424107 LS(ph)PSWNPK ddPTM_HeLa_CUDC101_4h_R1 2 LSPSWNPK 8 0 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 0 LS(0.993)PS(0.007)WNPK;LS(0.983)PS(0.017)WNPK ; 140.45 0.0045197 55372000 7658.3 7003.9 7030.1 6880 6912.6 7109.9 6733.2 6180.5 6960.2 8277.9 TRUE FALSE FALSE 6760.605683 7219.681857 7410.168471 7160.596138 6402.67127 6974.290503 6992.901779 6884.063138 6673.29761 8228.662683 0.821592274 0.877382162 0.90053132 0.870201686 0.778093782 0.847560627 0.849822389 0.836595617 0.810982035 1 13.00644227 -9.392607738 0.746965319 1.018102813 0.845782861 0 0.066612998 0.354278867 0.292201135 0.039373308 0.006769796 4.05E-10 9.392607738 -0.172319952 SLS(ph)AIDR ddPTM_HeLa_CUDC101_4h_R1 2 SLSAIDR 7 0 O95831-6;O95831-4;O95831-3;O95831 O95831-6 AIFM1 "Apoptosis-inducing factor 1, mitochondrial" 1 0 S(0.008)LS(0.992)AIDR;S(0.001)LS(0.999)AIDR ; 105.1 0.015999 74228000 12071.3 10422.8 8152.6 10711.7 10918.3 10050.5 9547.7 8417.1 7606.8 8304.8 TRUE FALSE FALSE 10656.32051 10743.91411 8593.354216 11148.56943 10112.87876 9858.803458 9915.957987 9375.268641 7293.244484 8255.40268 1.290829887 1.301440345 1.040937014 1.350457374 1.225001269 1.194224418 1.201147705 1.135652494 0.883451089 1 13.01112287 -9.392524164 1.088959962 0.998551972 1.22336917 0.564908845 0.092647062 0.333313947 0.699893148 0.057561874 0.014345019 4.05E-10 9.392524164 0.224817199 HSPQQPSNGS(ph)LR ddPTM_HeLa_CUDC101_4h_R1 1 HSPQQPSNGSLR 12 0 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 HS(0.306)PQQPS(0.059)NGS(0.635)LR 109.95 0.0057648 8074300 393.61 398.12 282.87 268.8 298.06 506.66 227.87 263.57 454.45 286.17 TRUE FALSE FALSE 347.4716325 410.3856053 298.1628078 279.7628259 276.0727076 496.9963047 236.6590222 293.5737434 435.7173786 284.4678481 1.221479456 1.442643195 1.048142382 0.983460267 0.970488262 1.747108884 0.831935925 1.032010279 1.531692884 1 8.152121791 -9.392265921 1.200951129 1.002819463 1.166354508 0 0.300849559 1.18414429 3.133701023 0.153515653 0.042122959 4.05E-10 9.392265921 0.163535045 GDTVSAS(ph)PCSAPLAR ddPTM_HeLa_CUDC101_4h_R1 2 GDTVSASPCSAPLAR 15 0 Q15477 Q15477 SKIV2L Helicase SKI2W 1 0 GDT(0.064)VS(0.064)AS(0.838)PCS(0.035)APLAR;GDT(0.005)VS(0.003)AS(0.868)PCS(0.123)APLAR ; 236.4 2.50E-43 111197000 6006.9 4819.6 4323.2 4715.4 5166.9 4847.5 4438.7 3715.3 4697.5 3127.67 TRUE FALSE FALSE 5302.780288 4968.086163 4556.925269 4907.714394 4785.748081 4755.042014 4609.902146 4138.234734 4503.867062 3109.06648 1.705586009 1.597935006 1.465689235 1.578517033 1.539287793 1.529411495 1.482728715 1.33102163 1.448623595 1 11.60226575 -9.392199028 1.079509968 0.995356077 1.543085627 0.199995411 0.163164729 0.179575142 0.369309325 0.075310407 0.018614424 4.05E-10 9.392199028 0.547729551 S(ph)AEALGPGALVSPR ddPTM_HeLa_CUDC101_4h_R1 1 SAEALGPGALVSPR 14 0 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 S(1)AEALGPGALVSPR 168.45 5.80E-07 5227700 529.05 532.92 497.49 571.94 500.86 513.36 593.11 395.86 468.25 712.15 TRUE FALSE FALSE 467.035561 549.3386335 524.3858142 595.2661853 463.9125557 503.5685133 615.9864514 440.9231023 448.9485368 707.9141001 0.659734791 0.775996174 0.740747803 0.840873469 0.655323231 0.711341268 0.870142933 0.622848312 0.634185047 1 9.467430501 -9.39210546 1.024056708 1.005889489 0.734479869 0 0.134995827 0.273783552 0.495574626 0.055781973 0.013077826 4.05E-10 9.39210546 -0.27140962 HS(ph)PIKEEPCGSLSETVCK ddPTM_HeLa_CUDC101_4h_R1 1 HSPIKEEPCGSLSETVCK 18 1 J3QQY0;J3KSZ8;Q68DK7;J3KTC2;Q68DK7-3;Q68DK7-2 J3QQY0 MSL1 Male-specific lethal 1 homolog 1 0 HS(0.993)PIKEEPCGS(0.006)LS(0.001)ETVCK 57.148 0.022942 9629600 7419 5362 5023.7 5137.3 5251.3 5088.1 5053.1 5011 6225.3 1838 TRUE FALSE FALSE 6549.356066 5527.196864 5295.296418 5346.821299 4863.922061 4991.05297 5247.99976 5581.431985 5968.690499 1827.067494 3.584627326 3.025173882 2.898248934 2.926449798 2.662146897 2.731728842 2.872362283 3.054858128 3.266814454 1 10.83531421 -9.392049212 1.066679529 0.976943424 2.995579145 0 0.728761135 0.144658511 0.289073693 0.222607147 0.054379159 4.05E-10 9.392049212 2.018635721 DFQGSK(ac)LK ddPTM_HeLa_CUDC101_4h_R1 1 DFQGSKLK 8 1 H7BY36;A0A0D9SFL3;B0QYK0;C9JGE3;Q01844-2;Q01844-6;Q01844-3;Q01844;Q01844-5 H7BY36 EWSR1 RNA-binding protein EWS 0 1 DFQGSK(1)LK 87.308 0.033971 1120600 677.29 444.88 304.08 462.53 514.91 597.98 391.01 471.1 384.16 192.25 FALSE TRUE FALSE 597.8990929 458.5862255 320.5194846 481.3939726 476.9261151 586.5745278 406.0913867 524.7281197 368.3247622 191.1064884 3.128617441 2.39963713 1.677177406 2.51898288 2.49560399 3.069359563 2.12494819 2.745736809 1.927327351 1 7.578232951 -6.111887948 7.048973125 2.044560023 2.595139934 0.209391878 0.549557653 0.508158796 28.57034481 0.125310034 0.208775792 7.73E-07 6.111887948 0.550579911 WDGS(ph)EEDEDNSK ddPTM_HeLa_CUDC101_4h_R1 6 WDGSEEDEDNSK 12 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(0.999)EEDEDNS(0.001)K ;;;;; 251.91 1.14E-55 1017980000 17646.9 15634 17357.8 15433 16280.9 15544.8 14932.9 15744.9 16584.6 18371.8 TRUE FALSE FALSE 15578.35713 16115.66501 18296.21517 16062.42445 15079.89044 15248.30884 15508.86696 17537.23577 15900.97577 18262.52372 0.853023239 0.882444577 1.001844841 0.879529286 0.825728726 0.834950803 0.849218169 0.960285448 0.87068885 1 14.15659853 -9.392009087 0.927843946 1.005865241 0.881924518 0 0.065969623 0.535415953 0.760093697 0.047787822 0.010142628 4.06E-10 9.392009087 -0.123940723 KLDDTPSGAGK(ac)FPAGHSVIQLAR ddPTM_HeLa_CUDC101_4h_R1 1 KLDDTPSGAGKFPAGHSVIQLAR 23 2 Q9HC52;C9J6K3 Q9HC52 CBX8 Chromobox protein homolog 8 0 1 K(0.001)LDDTPSGAGK(0.999)FPAGHSVIQLAR 79.455 0.00075458 817090 564.32 717.65 582.43 811.37 1389.5 1159.3 1197.9 1171.6 588.01 462.6 FALSE TRUE FALSE 498.1712651 739.7599459 613.9179276 844.4611756 1286.999353 1137.188284 1244.103404 1304.970208 563.7719789 459.8484346 1.08333796 1.608703847 1.335044074 1.836390237 2.79874684 2.47296326 2.705464041 2.837826792 1.225995212 1 8.845014619 -6.104702216 0.911380429 1.038953977 2.807441724 0.915094317 0.206096616 0.093639513 0.152369664 0.034486333 0.085936208 7.86E-07 6.104702216 1.768487747 up DFSALESQLQDTQELLQEENR ddPTM_HeLa_CUDC101_4h_R1 4 DFSALESQLQDTQELLQEENR 21 0 P35579 P35579 MYH9 Myosin-9 0 0 ;;; ;;; 224.12 3.31E-35 14382200 8371.11 7203.83 7067.28 6899.03 7759.11 7675.53 7361.66 6643.12 7989.42 7631.71 FALSE FALSE TRUE 7389.861176 7425.771464 7449.358534 7180.402264 7186.735914 7529.132054 7645.601692 7399.345928 7660.092726 7586.31625 0.974104023 0.978837583 0.981946743 0.946493928 0.947328806 0.992462192 1.007814787 0.975354267 1.009724941 1 12.8891838 -9.163675303 0.784402983 1.000973381 0.97544093 0.29262241 0.017730763 0.974825987 1.02072498 0.015395204 0.003811132 6.86E-10 9.163675303 -0.02553245 YLMEEDEDAYK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 YLMEEDEDAYKK 12 1 A0A2R8Y6J3;P46777 A0A2R8Y6J3 RPL5 60S ribosomal protein L5 0 1 YLMEEDEDAYK(1)K 71.03 0.03415 731440 134.75 223.48 174.46 377.63 530.79 498.03 550.74 462.16 160.53 182.7 FALSE TRUE FALSE 118.9548093 230.3651539 183.8918353 393.0313837 491.6346792 488.5309075 571.9822263 514.7704263 153.9128855 181.6132923 0.654989554 1.268437739 1.012546125 2.164111331 2.70704128 2.689951277 3.149451338 2.834431444 0.847475884 1 7.504725987 -6.098584965 1.468985358 0.851535005 2.927652109 0.9596775 0.183915424 0.053620308 0.228107798 0.032120767 0.06502429 7.97E-07 6.098584965 2.076117103 up DFSPEALK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DFSPEALKK 9 1 E5RGU4;A0A087WZK9;B3KS98;O15372;E5RJT0 E5RGU4 EIF3H Eukaryotic translation initiation factor 3 subunit H 0 1 ; DFSPEALK(1)K;DFSPEALK(1)K 107.15 0.0036404 529550 715.77 193.26 100.73 264.58 376.37 255.74 240.16 387.73 559.81 155.8 FALSE TRUE FALSE 631.8685256 199.2141115 106.1757685 275.370716 348.6059349 250.8621856 249.4230516 431.8676159 536.7343949 154.8732947 4.079906268 1.286303826 0.685565376 1.778038729 2.250910563 1.619789817 1.610497486 2.788522171 3.465635544 1 7.274944587 AT(ph)SDEEDSVLNIAR ddPTM_HeLa_CUDC101_4h_R1 1 ATSDEEDSVLNIAR 14 0 Q5JPF3-3;Q5JPF3 Q5JPF3-3 ANKRD36C Ankyrin repeat domain-containing protein 36C 1 0 AT(0.761)S(0.239)DEEDSVLNIAR 146.84 0.0015698 1956100 1040.7 1013.4 791.18 878.14 1092.9 952.02 1161.8 729.38 855 1120.8 TRUE FALSE FALSE 918.7107236 1044.621653 833.953584 913.9543448 1012.278944 933.8618047 1206.611015 812.4096709 819.7565381 1114.133432 0.824596675 0.937609108 0.748522179 0.820327547 0.908579633 0.838195658 1.083004047 0.729185255 0.735779499 1 10.12170631 -9.39175624 1.032823579 1.002682218 0.863525886 0 0.125583756 0.645283855 1.192707661 0.067621327 0.015998694 4.06E-10 9.39175624 -0.139156332 S(ph)SS(ph)PVT(ph)ELASRSPIR ddPTM_HeLa_CUDC101_4h_R1 1 SSSPVTELASRSPIR 15 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.772)S(0.228)S(1)PVT(1)ELASRSPIR 156.2 0.00013913 15904000 1517.7 1563.8 1340 1484.5 1406.2 1400.4 1305.9 1273.8 1633 2223.1 TRUE FALSE FALSE 1339.797507 1611.978824 1412.444453 1545.044327 1302.467428 1373.689703 1356.269 1418.804243 1565.687049 2209.876902 0.606276986 0.729442813 0.639150738 0.699154023 0.589384606 0.621613675 0.613730565 0.642028631 0.708495142 1 11.10975029 -9.391409583 0.627773104 1.064727696 0.634809021 0.245885608 0.099141169 0.242941416 0.130536169 0.060747624 0.009066154 4.06E-10 9.391409583 -0.429918676 NIIEATHMYDNAAEACST(ph)TEEVFNSPR ddPTM_HeLa_CUDC101_4h_R1 1 NIIEATHMYDNAAEACSTTEEVFNSPR 27 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 NIIEATHMYDNAAEACS(0.11)T(0.813)T(0.046)EEVFNS(0.032)PR 128.68 4.88E-11 13238000 1401.1 1289 989.89 912.04 1113 1287.4 886.79 938.06 980.08 708.01 TRUE FALSE FALSE 1236.865182 1328.712562 1043.406448 949.2369334 1030.896207 1262.84499 920.9937874 1044.844959 939.6806876 703.798725 1.757413218 1.887915557 1.482535291 1.348733522 1.464759981 1.794326908 1.308603944 1.484579215 1.335155427 1 9.45901909 -9.391381413 1.127238216 1.001337847 1.577289864 0.333145094 0.206586949 0.297484775 0.678623011 0.133103756 0.034384163 4.06E-10 9.391381413 0.575952017 DSRPLS(ph)PILHIVKDESPAK ddPTM_HeLa_CUDC101_4h_R1 1 DSRPLSPILHIVKDESPAK 19 2 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 1 0 DS(0.067)RPLS(0.933)PILHIVKDESPAK 47.916 0.032809 27242000 1580 1317.8 1668.3 1398.5 1854.6 1860.6 1563.9 1806.6 1402.9 2367.6 TRUE FALSE FALSE 1394.794795 1358.399856 1758.493344 1455.536875 1717.789853 1825.112155 1624.220147 2012.256041 1345.071868 2353.51741 0.59264265 0.577178588 0.747176688 0.618451713 0.72988194 0.775482751 0.690124551 0.854999429 0.57151558 1 11.20060281 -9.39110871 1.113468777 1.000181517 0.688601363 0 0.154245515 0.246838959 0.546930873 0.059494993 0.015189684 4.06E-10 9.39110871 -0.311580153 ST(ph)PS(ph)PTPVESSDPK ddPTM_HeLa_CUDC101_4h_R1 1 STPSPTPVESSDPK 14 0 Q9NW07 Q9NW07 ZNF358 Zinc finger protein 358 2 0 S(0.419)T(0.58)PS(0.656)PT(0.345)PVESSDPK 118.51 0.0057364 17975000 2671.6 2479.1 2260.1 2030.7 2845.5 2418 2168.2 2300.4 2879.7 2686.4 TRUE FALSE FALSE 2358.439098 2555.478133 2382.287842 2113.520723 2635.593134 2371.880679 2251.8282 2562.268237 2760.997547 2670.421173 0.88317121 0.956956962 0.892101915 0.791455949 0.986957848 0.888204716 0.843248332 0.959499671 1.033918385 1 11.38285158 -9.390746346 0.691571045 1.014696856 0.896342007 0.402297715 0.055868064 0.921047368 0.627788717 0.06722157 0.010835302 4.07E-10 9.390746346 -0.118354849 T(ph)GQARMSATPTPAGEGAR ddPTM_HeLa_CUDC101_4h_R1 1 TGQARMSATPTPAGEGAR 18 1 A0A0C4DFP5;P35398-1 A0A0C4DFP5 RORA 1 0 T(0.701)GQARMS(0.146)AT(0.146)PT(0.007)PAGEGAR 92.792 0.032274 10149000 2173.8 2280 2618 1920 2549.7 2527.1 2271.7 2155.4 2682.4 3688.2 TRUE FALSE FALSE 1918.990459 2350.244098 2759.536999 1998.305899 2361.613711 2478.899778 2359.32023 2400.762024 2571.830337 3666.262422 0.52341874 0.641046337 0.752683982 0.545052609 0.644147483 0.676138119 0.643521919 0.654825473 0.701485611 1 11.84009434 -9.39064438 1.039937904 1.006589908 0.629268587 0.246044507 0.108320599 0.176611923 0.332089517 0.050290782 0.012000773 4.07E-10 9.39064438 -0.377321321 VTNGAFTGEIS(ph)PGMIK ddPTM_HeLa_CUDC101_4h_R1 1 VTNGAFTGEISPGMIK 16 0 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 1 0 VTNGAFT(0.029)GEIS(0.971)PGMIK 157.54 8.25E-05 22569000 1801.1 1545.9 1197.1 1328.4 1524.7 1548.9 1259.3 1524.6 1637.9 1069.7 TRUE FALSE FALSE 1589.977788 1593.527347 1261.818847 1382.577894 1412.225919 1519.357313 1307.871623 1698.154301 1570.385069 1063.337377 1.495271231 1.498609361 1.18665898 1.30022505 1.328107099 1.428857243 1.229968636 1.597004242 1.476845546 1 10.05438369 -9.390625584 1.080571183 0.996953351 1.381615775 0 0.188933004 0.294246955 0.606952136 0.086630308 0.021482984 4.07E-10 9.390625584 0.384662424 CS(ph)PLEPDFVPDEK ddPTM_HeLa_CUDC101_4h_R1 1 CSPLEPDFVPDEK 13 0 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 CS(1)PLEPDFVPDEK 92.538 0.015064 16496000 3681 2930.2 2746.4 3220.3 2737.4 2716.7 2715 2872.5 2900.8 2049.4 TRUE FALSE FALSE 3249.51876 3020.475989 2894.878691 3351.637753 2535.467456 2664.883474 2819.718459 3199.493789 2781.227796 2037.210078 1.595082803 1.482653175 1.421001557 1.645209687 1.2445783 1.308104404 1.384107849 1.570527175 1.365214038 1 10.99237904 -9.389795161 1.074253708 0.995781989 1.459262716 0.204426389 0.16168003 0.258190339 0.525296298 0.091363411 0.022551877 4.08E-10 9.389795161 0.463480727 DFTPVCTTELGR ddPTM_HeLa_CUDC101_4h_R1 1 DFTPVCTTELGR 12 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 131.42 0.0084104 14923000 520.17 511.9 494.5 359.21 389.64 438.56 356.22 444.49 466.32 304.21 FALSE FALSE TRUE 459.1964611 527.6710322 521.2341658 373.8601364 360.8970335 430.1951987 369.9595247 495.0889449 447.0980922 302.4005454 1.518504077 1.744940743 1.723654847 1.236307745 1.193440419 1.422600605 1.22340892 1.637195939 1.478496316 1 8.240316931 -9.207177451 1.006523177 1.006635544 1.454250872 0 0.239217152 0.413975392 0.769522155 0.127549515 0.037886295 6.21E-10 9.207177451 0.447615329 DFTVSAMHGDMDQK ddPTM_HeLa_CUDC101_4h_R1 1 DFTVSAMHGDMDQK 14 0 P60842;P60842-2;J3KT12;J3KSZ0;J3QL52 P60842 EIF4A1 Eukaryotic initiation factor 4A-I 0 0 90.689 0.012999 14687000 4360.8 3184.6 3243.1 2945.6 4961.1 4506.3 3600.8 3524 4777.6 4561.1 FALSE FALSE TRUE 3849.633635 3282.713751 3418.431796 3065.7343 4595.129537 4420.349836 3739.684062 3925.157916 4580.665306 4533.970374 0.849064576 0.72402629 0.753959888 0.676169901 1.013489096 0.974940167 0.824814402 0.865722003 1.010298905 1 12.14655925 -8.845836713 0.95063986 0.990485112 0.836508078 0.31324735 0.099106295 0.555378877 0.98524411 0.049785421 0.020889689 1.43E-09 8.845836713 -0.153977034 DFVDDDDDDDLER ddPTM_HeLa_CUDC101_4h_R1 4 DFVDDDDDDDLER 13 0 G3V4K3;Q9H9C1-2;Q9H9C1 G3V4K3 VIPAS39 Spermatogenesis-defective protein 39 homolog 0 0 ;;; ;;; 342.24 9.93E-191 120424200 5669.75 4905.8 5306.77 4499.39 5342.38 5065.97 4304.58 4473.89 5277.29 5469.95 FALSE FALSE TRUE 5005.1505 5056.941883 5593.670038 4682.894572 4948.283271 4969.345063 4470.609093 4983.179554 5059.757873 5437.414494 0.920501923 0.930026925 1.028737104 0.861235533 0.910043418 0.913916912 0.822193912 0.916461226 0.930544816 1 12.40870509 -6.336157062 0.016823621 1.836269524 1.12E-11 0.224894212 0.049404837 489.9097897 3.494152009 182.9317704 198.1754978 4.61E-07 6.336157062 -1.836269524 TKPT(ph)QAAGPSSPQKPPTPEETK ddPTM_HeLa_CUDC101_4h_R1 1 TKPTQAAGPSSPQKPPTPEETK 22 2 F5H8D7;P18887 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 T(0.091)KPT(0.462)QAAGPS(0.244)S(0.037)PQKPPT(0.165)PEET(0.001)K 78.794 0.003874 51029000 1543.8 1257.1 1632.9 1332.8 1603.2 1812.5 1315.4 1041.2 1593.7 1748.1 TRUE FALSE FALSE 1362.838104 1295.829761 1721.179513 1387.157345 1484.93513 1777.929582 1366.135419 1159.725999 1528.007011 1737.702223 0.784275974 0.745714509 0.990491633 0.798271031 0.854539466 1.023149742 0.786173488 0.667390525 0.879326153 1 10.76296516 -9.389488321 1.095301435 1.000719088 0.834196233 0.102393621 0.107315803 0.553325528 1.179544234 0.070822161 0.017830994 4.08E-10 9.389488321 -0.166522855 DFVTTAEDR ddPTM_HeLa_CUDC101_4h_R1 2 DFVTTAEDR 9 0 Q9Y263;E5RIM3;H0YAU9 Q9Y263 PLAA Phospholipase A-2-activating protein 0 0 ; ; 138.4 0.011514 14887300 5057.6 4766.2 4609.8 4637.5 4913 5257.5 4395.7 4240.1 4821.1 2249.84 FALSE FALSE TRUE 4464.755795 4913.040973 4859.019732 4826.637295 4550.577778 5157.221947 4565.243621 4722.775845 4622.372217 2236.457852 1.996351414 2.196795691 2.17264087 2.158161528 2.034725481 2.305977706 2.041283102 2.111721373 2.066827333 1 11.12699985 -8.930481159 0.575737432 0.901630933 2.164239213 0.06233507 0.336322993 0.137715895 0.077883455 0.088802488 0.022452636 1.17E-09 8.930481159 1.26260828 DFYFGK ddPTM_HeLa_CUDC101_4h_R1 1 DFYFGK 6 0 Q15691;Q15555-4;Q15555-5;Q15555-3;Q15555 Q15691 MAPRE1;MAPRE2 Microtubule-associated protein RP/EB family member 1;Microtubule-associated protein RP/EB family member 2 0 0 119.7 0.0010649 0 1725.6 1594.3 1526.4 1687.7 1474 1708.3 1395.6 1390.6 1421.7 1632.8 FALSE FALSE TRUE 1523.327784 1643.418493 1608.921801 1756.531701 1365.265957 1675.717024 1449.428759 1548.900283 1363.096924 1623.088033 0.93853676 1.01252579 0.99127205 1.082215915 0.841153363 1.032425223 0.893006867 0.95429222 0.839817001 1 10.66452554 -5.756956362 24.99951162 0.982406264 0.934861827 0.086443933 0.073445773 178.5195257 995499.561 0.008226996 0.016016739 1.75E-06 5.756956362 -0.047544436 AQGAGVTLPPT(ph)PSGSR ddPTM_HeLa_CUDC101_4h_R1 1 AQGAGVTLPPTPSGSR 16 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 AQGAGVTLPPT(0.802)PS(0.148)GS(0.049)R 93.738 0.031894 17225000 1335.9 1148.2 1102.9 819.02 1095.8 908.6 968.94 1481.7 971.93 860.76 TRUE FALSE FALSE 1179.307827 1183.574681 1162.52611 852.4231757 1014.965017 891.2699688 1006.31234 1650.370739 931.866634 855.6401612 1.378275449 1.383262187 1.358662394 0.996240259 1.186205444 1.041641112 1.176092925 1.92881402 1.089087067 1 9.74086039 -9.389156443 1.10392145 0.999337571 1.29019272 0.147566718 0.246428372 0.745419477 1.619287464 0.167069555 0.042412499 4.08E-10 9.389156443 0.290855149 DGADFAK(ac)WR ddPTM_HeLa_CUDC101_4h_R1 2 DGADFAKWR 9 1 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8;H3BR04;H3BMQ8;H3BU78;P09972;K7EKH5;C9J8F3;J3KSV6;J3QKP5;A8MVZ9 P04075;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C 0 1 ; DGADFAK(1)WR;DGADFAK(1)WR 146.79 0.0015343 35991000 4925.8 3698.9 5184.3 3709.8 5024.8 4332.3 3880.8 3961 6980.9 4650.1 FALSE TRUE FALSE 4348.405191 3812.858725 5464.57894 3861.101679 4654.130515 4249.668596 4030.483756 4411.904229 6693.144347 4622.440998 0.940716213 0.824858279 1.182184682 0.835294962 1.006855581 0.919355941 0.871938389 0.954453336 1.447967502 1 12.17443919 TGFGGK(ac)FGVQSER ddPTM_HeLa_CUDC101_4h_R1 2 TGFGGKFGVQSER 13 1 Q14247 Q14247 CTTN Src substrate cortactin 0 1 ; TGFGGK(1)FGVQSER;TGFGGK(1)FGVQSER 196.02 2.95E-11 18279000 1047.61 1374.34 1173.97 1521.99 1921.03 1906.48 1788.22 2029.59 854.06 854.26 FALSE TRUE FALSE 924.8107439 1416.681786 1237.438369 1584.063331 1779.319444 1870.11707 1857.192244 2260.630322 818.8552853 849.1788235 1.089064774 1.668296179 1.45721765 1.865406069 2.095341281 2.202265316 2.187044934 2.662136948 0.964290751 1 9.729924584 -6.082088476 0.498537757 0.978872696 2.595967771 0.93734924 0.138451995 0.180813061 0.080111091 0.037075442 0.12900478 8.28E-07 6.082088476 1.617095075 up GPQGS(ph)PLLSR ddPTM_HeLa_CUDC101_4h_R1 1 GPQGSPLLSR 10 0 Q8TEP8;K7EPA2;H0Y966;A0A0A0MR42;K7ENP4;Q8TEP8-1 Q8TEP8 CEP192 Centrosomal protein of 192 kDa 1 0 GPQGS(1)PLLSR 113.95 0.006898 17589000 411.21 364.2 591.22 412.96 294.87 412.05 376.32 464.91 401.65 612.86 TRUE FALSE FALSE 363.0085872 375.4205703 623.1831415 429.8022938 273.1180276 404.1908328 390.8347885 517.8334752 385.093817 609.2146815 0.595863163 0.616236906 1.022928633 0.705502193 0.448311631 0.663462069 0.64153869 0.850001635 0.632115129 1 9.2508069 -9.389089297 1.021747403 1.007004148 0.683672472 0 0.184156466 0.473280964 0.853109398 0.114624755 0.026932867 4.08E-10 9.389089297 -0.323331676 S(ph)LNPALDGLTCGLTSHDKR ddPTM_HeLa_CUDC101_4h_R1 2 SLNPALDGLTCGLTSHDKR 19 1 A0A0A0MRE6;O94967-2;O94967;O94967-3;O94967-4 A0A0A0MRE6 WDR47 WD repeat-containing protein 47 1 0 S(1)LNPALDGLTCGLTSHDKR;S(1)LNPALDGLTCGLTSHDKR ; 75.743 0.014207 53617000 6937.1 5057.5 5905.8 5163.7 5614 6165.4 5675 3493.7 4623.2 3688.7 TRUE FALSE FALSE 6123.943654 5213.31558 6225.085412 5374.298005 5199.866405 6047.805267 5893.886651 3891.408686 4432.629739 3666.759448 1.67012419 1.421777363 1.697707608 1.46568055 1.418109499 1.649359701 1.607382959 1.061266424 1.20886843 1 11.84028991 -9.38899397 1.050040878 0.992312325 1.520340033 0.398666317 0.186619773 0.313231892 0.603366542 0.125181714 0.030237377 4.08E-10 9.38899397 0.528027709 VNPVTSLSENYT(ph)CSDSEESSEKDK ddPTM_HeLa_CUDC101_4h_R1 1 VNPVTSLSENYTCSDSEESSEKDK 24 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 VNPVTSLS(0.017)ENY(0.15)T(0.412)CS(0.412)DS(0.01)EESSEKDK 73.459 0.00025606 0 863.34 721.58 552.8 615.27 935.87 813.39 617.46 454.32 807.99 496.11 TRUE FALSE FALSE 762.1405939 743.8110245 582.6860401 640.36337 866.8327346 797.875941 641.275639 506.0379524 774.6843102 493.1591157 1.54542534 1.508257682 1.181537604 1.298492413 1.757714107 1.617887444 1.30034226 1.026114972 1.570860774 1 8.945909391 -9.38895515 1.061896049 0.994931175 1.422530948 0 0.268959344 0.479382369 0.948827565 0.155787054 0.038058346 4.08E-10 9.38895515 0.427599773 DHS(ph)PTPSVFNSDEER ddPTM_HeLa_CUDC101_4h_R1 4 DHSPTPSVFNSDEER 15 0 Q6UN15;Q6UN15-5;Q6UN15-3 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 DHS(0.999)PT(0.001)PS(0.001)VFNSDEER;DHS(0.768)PT(0.232)PSVFNSDEER;DHS(0.963)PT(0.007)PS(0.007)VFNS(0.024)DEER;DHS(0.935)PT(0.032)PS(0.032)VFNSDEER ;;; 218.12 3.51E-25 254627000 3790.88 3641.42 4490.83 4090.17 4194.32 4228.12 3608.56 3201.09 4626.62 5942.1 TRUE FALSE FALSE 3346.518793 3753.607834 4733.617854 4256.984812 3884.91337 4147.475656 3747.743368 3565.489146 4435.908765 5906.756125 0.566557806 0.635477029 0.801390434 0.720697574 0.657706749 0.70215793 0.634484189 0.603628975 0.750988981 1 12.52815033 -9.38892258 1.04280257 1.005626355 0.662631025 0.329713947 0.096911605 0.204707643 0.387779697 0.053002934 0.012715419 4.08E-10 9.38892258 -0.342995329 TDPECTAPIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TDPECTAPIKK 11 1 Q8N1G2;Q5T7F5 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 0 1 ; TDPECTAPIK(1)K;TDPECTAPIK(1)K 140.16 0.00034941 19912400 1438.88 2083.46 2666.6 4088 5163.1 5231 5380.7 6173.6 1142.71 1182.92 FALSE TRUE FALSE 1270.216668 2147.648933 2810.764462 4254.72631 4782.228399 5131.22739 5588.235401 6876.377669 1095.60701 1175.883939 1.080222822 1.826412337 2.390341741 3.618321645 4.066922117 4.363719258 4.752369868 5.847837053 0.931730568 1 10.19952996 -6.047012382 0.659362642 0.946570882 5.451771808 0.973563938 0.273386881 0.085618714 0.069083273 0.059390216 0.18840753 8.97E-07 6.047012382 4.505200926 up T(ph)GYLICRRS(ph)LALS(ph)PRLECSGTISTHSK ddPTM_HeLa_CUDC101_4h_R1 1 TGYLICRRSLALSPRLECSGTISTHSK 27 3 O75319-2 O75319-2 3 0 T(0.545)GY(0.517)LICRRS(0.921)LALS(0.291)PRLECS(0.29)GT(0.29)IS(0.047)T(0.047)HS(0.052)K 40.937 0.032343 5569200 1002.8 1022.1 861.67 782.93 1034.8 1033.4 1100.5 992.66 863.34 1303.8 TRUE FALSE FALSE 885.2533041 1053.58969 908.2544866 814.8612695 958.4648656 1013.689617 1142.946654 1105.660402 827.7527598 1296.04494 0.683042136 0.812926819 0.700789347 0.628729178 0.73953058 0.782140793 0.881872703 0.853103444 0.638675971 1 10.33990003 -9.388881797 1.048216222 1.003731475 0.753805632 0 0.133079447 0.319418123 0.612726543 0.060378881 0.014561352 4.08E-10 9.388881797 -0.249925843 AQT(ph)PPGPSLS(ph)GSKSPCPQEK ddPTM_HeLa_CUDC101_4h_R1 1 AQTPPGPSLSGSKSPCPQEK 20 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AQT(0.995)PPGPS(0.337)LS(0.632)GS(0.012)KS(0.024)PCPQEK 69.528 0.013324 283020000 7717.6 6236.5 6384.1 7179.8 8109.7 6766.1 6692.8 6477.2 7514.1 5037.1 TRUE FALSE FALSE 6812.954627 6428.639173 6729.243757 7472.623278 7511.463588 6637.047916 6950.943538 7214.538266 7204.365618 5007.139105 1.360648163 1.283894663 1.34392986 1.492393784 1.500150771 1.325516982 1.388206597 1.440850377 1.438818748 1 12.28977082 -9.388642413 0.382494714 0.846579684 1.426248323 0 0.150176529 0.746909754 0.133189014 0.180976364 0.023550067 4.09E-10 9.388642413 0.579668639 DGDSVMVLPTIPEEEAK ddPTM_HeLa_CUDC101_4h_R1 3 DGDSVMVLPTIPEEEAK 17 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 ;; ;; 234.69 1.07E-42 69146500 14164.6 11215.8 10991.8 10805 11108.2 12060.5 11439.1 9980.7 11902.2 14718.6 FALSE FALSE TRUE 12504.24706 11561.3455 11586.04996 11245.6746 10288.77022 11830.46606 11880.30992 11116.86254 11411.58628 14631.05311 0.854637528 0.7901923 0.791880794 0.768616894 0.703214604 0.808586092 0.811992809 0.759812876 0.779956589 1 13.83674599 -8.242362334 0.538911117 1.000900152 0.766716857 0.047528911 0.072548582 0.198839501 0.128828735 0.02035145 0.010151805 5.72E-09 8.242362334 -0.234183295 Y(ph)RSPEPDPYLSYR ddPTM_HeLa_CUDC101_4h_R1 1 YRSPEPDPYLSYR 13 1 H3BUL5;H3BVF8;H3BQG1;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 Y(0.997)RS(0.003)PEPDPYLSYR 106.54 0.010771 242850000 4367.3 3273.8 3473.6 3770 4103.1 3863.6 3749.4 2773.5 3272.3 3044.6 TRUE FALSE FALSE 3855.371714 3374.661898 3661.393323 3923.756895 3800.422488 3789.908267 3894.015614 3089.224029 3137.414409 3026.490584 1.273875338 1.115041268 1.209781832 1.296470875 1.25571925 1.252245187 1.286643889 1.020728115 1.036650973 1 11.56343015 -9.388507575 0.888352713 0.986387608 1.223055536 0.469634713 0.082344344 0.433883762 0.553704875 0.072381973 0.014785728 4.09E-10 9.388507575 0.236667928 DSSGSFS(ph)PCQPFLEK ddPTM_HeLa_CUDC101_4h_R1 1 DSSGSFSPCQPFLEK 15 0 Q6ZRI6-2;Q6ZRI6;H3BMJ2 Q6ZRI6-2 C15orf39 Uncharacterized protein C15orf39 1 0 DSSGS(0.01)FS(0.99)PCQPFLEK 81.448 0.018438 4285900 2095.6 1747.9 1813.7 1707.7 1643.2 1731.1 1410.8 1076.4 2162.7 1116.5 TRUE FALSE FALSE 1849.956945 1801.750727 1911.754108 1777.347387 1521.98441 1698.082152 1465.215029 1198.933025 2073.552591 1109.859008 1.666839599 1.623405057 1.722519792 1.601417274 1.371331312 1.52999808 1.320181228 1.080257056 1.868302708 1 10.1161607 -9.388210121 1.118440838 1.000635308 1.510047427 0 0.322820187 0.340072694 0.762364066 0.134023865 0.03451342 4.09E-10 9.388210121 0.509412119 S(ph)PPEGDTTLFLSR ddPTM_HeLa_CUDC101_4h_R1 2 SPPEGDTTLFLSR 13 0 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(1)PPEGDTTLFLSR;S(1)PPEGDTTLFLSR ; 127.3 0.001445 134473000 384.255 426.201 280.5 476.973 298.31 409.01 382.04 318.08 326.53 511.779 TRUE FALSE FALSE 339.2132114 439.3317476 295.6646785 496.4260206 276.3042656 401.2088157 396.7754108 354.2889415 313.0702952 508.7349157 0.666777925 0.863576951 0.581176305 0.975804894 0.543120311 0.78864022 0.779925652 0.696411688 0.615389834 1 8.990770303 -9.38762692 0.960287496 1.010192465 0.73468898 0 0.169251459 0.44529956 0.689809759 0.089538468 0.019804421 4.10E-10 9.38762692 -0.275503485 TTS(ph)PSSDTDLLDR ddPTM_HeLa_CUDC101_4h_R1 2 TTSPSSDTDLLDR 13 0 Q96QT6-5;Q96QT6-3;Q96QT6;C9J9G2;Q96QT6-2;K7ENU0;K7ERZ4;K7EJ43 Q96QT6-5 PHF12 PHD finger protein 12 1 0 T(0.006)T(0.033)S(0.961)PSSDTDLLDR;T(0.002)T(0.01)S(0.768)PS(0.048)S(0.062)DT(0.11)DLLDR ; 113.07 0.0038168 118042000 7619.9 7465 7363.1 7162.5 7529.1 7294.5 6970.6 6566.7 9131.2 9384.5 TRUE FALSE FALSE 6726.706873 7694.987802 7761.171458 7454.617709 6973.693293 7155.369566 7239.458377 7314.226584 8754.808071 9328.680577 0.721078058 0.824874187 0.831968829 0.799107403 0.747554087 0.767029111 0.77604312 0.784057995 0.938482993 1 13.18745733 -9.387009755 0.971903198 1.007762744 0.778480668 0.809533551 0.036013899 0.177396352 0.283153486 0.029829807 0.006684625 4.10E-10 9.387009755 -0.229282076 VQSGMGLILQGYES(ph)GS(ph)EEEGEIHEK ddPTM_HeLa_CUDC101_4h_R1 2 VQSGMGLILQGYESGSEEEGEIHEK 25 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 VQS(0.008)GMGLILQGY(0.468)ES(0.763)GS(0.761)EEEGEIHEK;VQS(0.004)GMGLILQGY(0.638)ES(0.679)GS(0.679)EEEGEIHEK ; 51.811 0.027725 28281900 1914.02 1746.92 1860.6 1563.06 1776.43 2014.04 1639.66 1868.75 2063.2 2189.25 TRUE FALSE FALSE 1689.661477 1800.740535 1961.189664 1626.808343 1645.386298 1975.625543 1702.902235 2081.480946 1978.154023 2176.228244 0.776417401 0.827459408 0.901187488 0.747535718 0.756072486 0.907820928 0.78250167 0.95646261 0.908982791 1 11.08761416 -9.386465444 1.038206615 1.002988515 0.825566206 0.28505881 0.07207531 0.360295306 0.675941591 0.048122327 0.01153527 4.11E-10 9.386465444 -0.177422309 NNCPFS(ph)ADENYRPLAK ddPTM_HeLa_CUDC101_4h_R1 2 NNCPFSADENYRPLAK 16 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154;Q15154-4;Q15154-2 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 NNCPFS(1)ADENYRPLAK;NNCPFS(1)ADENYRPLAK ; 94.707 0.0035179 26565000 4649.2 3477.6 3840.6 3817.7 4008.4 3338.4 3192.7 2710.2 3795.3 2195.24 TRUE FALSE FALSE 4104.227824 3584.740734 4048.234453 3973.402308 3712.708318 3274.725582 3315.843508 3018.718213 3638.856128 2182.182615 1.880790267 1.642731781 1.855130925 1.820838586 1.701373795 1.500665233 1.519507802 1.383348118 1.667530528 1 11.09155612 -9.386364488 1.071866335 0.993958767 1.681474309 0 0.254043165 0.238636737 0.483587249 0.12496485 0.030932769 4.11E-10 9.386364488 0.687515542 DGEEAGAYDGPR ddPTM_HeLa_CUDC101_4h_R1 2 DGEEAGAYDGPR 12 0 P30101;H7BZJ3 P30101;H7BZJ3 PDIA3 Protein disulfide-isomerase A3 0 0 ; ; 152.04 0.002643 95930000 6364.2 5392.8 5721.1 5967 5768.2 5283 5414.1 5358.4 5414.2 5343.5 FALSE FALSE TRUE 5618.198124 5558.945776 6030.399971 6210.360052 5342.691378 5182.235577 5622.923651 5968.378597 5191.024384 5311.716624 1.057699143 1.046544115 1.135301523 1.169181357 1.005831402 0.975623502 1.058588786 1.123625189 0.97727811 1 12.37496247 -8.628009434 0.774941486 1.003215263 1.070909634 0.248869526 0.056214371 0.848309782 1.026454326 0.029684402 0.013022705 2.35E-09 8.628009434 0.067694371 DGEFTLTTLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 DGEFTLTTLKK 11 1 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5;C9JVY5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 0 1 DGEFTLTTLK(1)K 140.07 5.36E-08 0 0 0 0 0 80.825 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 74.86270078 0 0 0 0 0 0 SSS(ph)PNSPLPMFR ddPTM_HeLa_CUDC101_4h_R1 1 SSSPNSPLPMFR 12 0 A0A0U1RR27;Q7Z401;Q7Z401-2;H3BTW5 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 S(0.06)S(0.06)S(0.879)PNS(0.001)PLPMFR 98.368 0.01298 2133900 1625.2 1608.3 1094.3 1288.8 1433.8 1594.7 1271.4 1309 1777 1380.2 TRUE FALSE FALSE 1434.69652 1657.849817 1153.461168 1341.362835 1328.031431 1564.283754 1320.438324 1458.011269 1703.751308 1371.990509 1.045704406 1.208353706 0.840720953 0.977676468 0.967959634 1.140156396 0.962425261 1.062697781 1.241809835 1 10.42205479 -9.386092216 0.002574693 0.511588369 1.526747443 0 0.119545938 914555.4699 561.1509521 111951.7614 109308.8481 4.11E-10 9.386092216 1.015159075 NQGGYGGSSSSSSYGS(ph)GR ddPTM_HeLa_CUDC101_4h_R1 4 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-3;P09651-2;P09651;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 NQGGYGGSSSS(0.005)S(0.015)S(0.286)Y(0.116)GS(0.578)GR;NQGGYGGSSSSSSYGS(1)GR;NQGGYGGS(0.009)S(0.009)S(0.005)S(0.015)S(0.107)S(0.025)Y(0.001)GS(0.828)GR;NQGGYGGSSSSSSYGS(1)GR ;;; 229.96 5.13E-34 85195000 5890.11 5392 5192.59 5429.71 7054.12 5437.26 5701.31 5537.396 6772.26 7414.38 TRUE FALSE FALSE 5199.680235 5558.121129 5473.317122 5651.157043 6533.751621 5333.553325 5921.211437 6167.750778 6493.104576 7370.278938 0.705493005 0.754126292 0.742620078 0.766749412 0.886499911 0.723656916 0.803390413 0.836840889 0.880984917 1 12.84750351 -9.385913179 1.078812488 1.001631792 0.772391428 0.493581972 0.06190146 0.221429857 0.455817793 0.038744071 0.009658765 4.11E-10 9.385913179 -0.229240364 DGETPDPEDPSR ddPTM_HeLa_CUDC101_4h_R1 2 DGETPDPEDPSR 12 0 P09960-3;P09960-2;P09960-4;P09960 P09960-3 LTA4H Leukotriene A-4 hydrolase 0 0 ; ; 121.61 0.017194 15855300 6249.4 4876.7 4670.8 4627.6 5304.8 4836 4739.5 4906.7 4918.6 5273.3 FALSE FALSE TRUE 5516.854805 5026.945347 4923.317576 4816.33353 4913.475473 4743.761357 4922.304103 5465.258894 4715.853226 5241.934177 1.05244641 0.958986736 0.939217741 0.918808472 0.93734017 0.904963931 0.939024401 1.042603495 0.899639917 1 12.35588352 -7.134575251 5.133000639 1.024632332 0.943503378 0 0.053893851 0.143769955 5.46511524 0.006466058 0.007960743 7.34E-08 7.134575251 -0.081128954 DGFIDKEDLHDMLASLGK ddPTM_HeLa_CUDC101_4h_R1 2 DGFIDKEDLHDMLASLGK 18 1 P24844;J3KTJ1;J3QRS3;P19105;O14950 P24844;J3QRS3 MYL9;MYL12A;MYL12B Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 0 ; ; 90.754 0.0028117 103167000 27024.6 20662.4 21891.5 19714.7 22981.5 22458.3 21834.1 20573.5 22408.1 28263.9 FALSE FALSE TRUE 23856.81735 21298.98405 23075.02071 20518.75068 21286.20053 22029.94535 22676.24855 22915.50408 21484.42863 28095.78507 0.849124426 0.758084674 0.821298307 0.730314196 0.757629676 0.784101434 0.807104998 0.815620707 0.764685115 1 14.77806609 -8.384273107 0.610159636 0.997411717 0.777342635 0 0.076739362 0.1829481 0.145228534 0.018581266 0.008659067 4.13E-09 8.384273107 -0.220069081 LFPEFDDS(ph)DYDEVPEEGPGAPAR ddPTM_HeLa_CUDC101_4h_R1 2 LFPEFDDSDYDEVPEEGPGAPAR 23 0 Q96P48-3;Q96P48 Q96P48-3 ARAP1 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1" 1 0 LFPEFDDS(1)DYDEVPEEGPGAPAR;LFPEFDDS(0.994)DY(0.006)DEVPEEGPGAPAR ; 138.8 1.41E-07 8039000 4436.23 3615.58 2966.69 3236.62 4049.39 3795.51 3691.02 3683.45 3492.96 2841.99 TRUE FALSE FALSE 3916.221844 3726.971734 3127.078235 3368.623353 3750.674567 3723.116971 3833.383878 4102.759059 3348.97871 2825.085717 1.386231158 1.319242001 1.106896763 1.192396865 1.32763213 1.317877524 1.356908873 1.452260027 1.18544322 1 11.46407893 -9.385642048 0.978243666 0.989869048 1.306634823 0.345335787 0.106941105 0.347975451 0.564743014 0.081013999 0.01831165 4.11E-10 9.385642048 0.316765775 DGFQHPAR ddPTM_HeLa_CUDC101_4h_R1 1 DGFQHPAR 8 0 F5H1H2;F5H2E6;A0A0C4DGG8;Q8IX12-2;Q8IX12;F5H3E1 F5H1H2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 0 89.752 0.027423 1006900 2216.6 1625 1922.9 2101.6 1726.9 1743.2 1630.4 1308.9 1734.1 1234.5 FALSE FALSE TRUE 1956.773508 1675.064324 2026.85779 2187.312332 1599.510027 1709.951364 1693.285074 1457.899885 1662.619664 1227.157139 1.594558224 1.364995786 1.651669314 1.782422366 1.303427227 1.393424941 1.379843722 1.188030317 1.354854738 1 10.26110428 -9.365618828 1.025405972 0.992896765 1.471095386 0.159210681 0.197811777 0.362353783 0.665461754 0.128650621 0.031402477 4.31E-10 9.365618828 0.478198621 DGGAWGTEQR ddPTM_HeLa_CUDC101_4h_R1 2 DGGAWGTEQR 10 0 P09382 P09382 LGALS1 Galectin-1 0 0 ; ; 152.06 0.0019385 408170000 6253.9 5541.8 5492.1 5821 5401.5 5890.3 5249.7 5197.4 5141.5 5495.3 FALSE FALSE TRUE 5520.827322 5712.536289 5789.019539 6058.405541 5003.042106 5777.952341 5452.182688 5789.051007 4929.565194 5462.613711 1.010656732 1.045751465 1.059752683 1.109067172 0.91586965 1.057726694 0.99809047 1.059758444 0.902418779 1 12.41537569 -7.419613298 4.722713732 1.004560627 1.033728563 0.136474482 0.057770477 0.468316923 16.41490835 0.00794315 0.008978093 3.81E-08 7.419613298 0.029167936 HVATEYQENKAPGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 HVATEYQENKAPGKK 15 2 O95239 O95239 KIF4A Chromosome-associated kinesin KIF4A 0 1 HVATEYQENK(0.023)APGK(0.977)K 82.202 0.012718 1977300 485.48 763.46 1278.5 1774.8 2800.4 2262.3 2475.7 3255.4 424.26 446.6 FALSE TRUE FALSE 428.5727703 786.9812977 1347.619577 1847.184015 2593.820071 2219.150397 2571.188578 3625.981577 406.7718232 443.9436033 0.965376609 1.772705568 3.035564804 4.160852868 5.842679232 4.998721414 5.791700925 8.167662626 0.916269139 1 8.794232604 -6.039207519 0.686941783 0.868891311 7.011950127 0.92529567 0.655323487 0.137295296 0.121007585 0.133883001 0.417845342 9.14E-07 6.039207519 6.143058816 up DGGFCEVCK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DGGFCEVCKK 10 1 Q5BJH1;C9JIZ6;P07602;P07602-2;P07602-3 Q5BJH1 PSAP Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D 0 1 ; DGGFCEVCK(1)K;DGGFCEVCK(1)K 130.41 0.0019317 5873400 2435.14 1116.99 1106.36 985.24 2187.09 1740.68 2467.76 1651.98 1734.75 0 FALSE TRUE FALSE 2149.696581 1151.403138 1166.173168 1025.422346 2025.752728 1707.479429 2562.94233 1840.034726 1663.242871 0 0 AHLS(ph)ENELEALEK ddPTM_HeLa_CUDC101_4h_R1 3 AHLSENELEALEK 13 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 0 AHLS(1)ENELEALEK;AHLS(1)ENELEALEK;AHLS(1)ENELEALEK ;; 201.24 9.37E-17 47685000 13130 10019.8 11445.4 11371.9 10600.5 11205.2 10240 9564.6 12871 14074.7 TRUE FALSE FALSE 11590.9213 10328.49816 12064.17294 11835.69524 9818.522234 10991.47948 10634.96023 10653.3954 12340.45193 13990.98306 0.828456532 0.738225335 0.862282006 0.845951652 0.701775007 0.785611664 0.760129591 0.761447238 0.882028938 1 13.77220971 -9.385597849 0.294337632 1.115922236 0.751321632 0.507080197 0.057692141 1.446089533 0.158446424 0.183746414 0.02742648 4.12E-10 9.385597849 -0.364600604 MIS(ph)GT(ph)LMPHNPAAPQSR ddPTM_HeLa_CUDC101_4h_R1 1 MISGTLMPHNPAAPQSR 17 0 Q8N0V3-2 Q8N0V3-2 2 0 MIS(1)GT(0.997)LMPHNPAAPQS(0.003)R 61.649 0.0023278 0 609.68 534.69 616.05 453.71 573.98 591.6 528.47 522.25 641.7 625.37 TRUE FALSE FALSE 538.2142346 551.1631651 649.3555264 472.2142549 531.6386389 580.3162157 548.8532649 581.700829 615.2488544 621.6502714 0.865782996 0.886612924 1.044567269 0.759614009 0.855205352 0.933509149 0.882897169 0.935736467 0.989702543 1 9.279959366 -9.38532858 0.958417679 1.004131353 0.892834462 0.251396619 0.068315773 0.675222807 1.042104026 0.05475222 0.012128263 4.12E-10 9.38532858 -0.111296891 TLDFDPLLSPAS(ph)PKR ddPTM_HeLa_CUDC101_4h_R1 2 TLDFDPLLSPASPKR 15 1 Q53H80 Q53H80 AKIRIN2 Akirin-2 1 0 TLDFDPLLS(0.047)PAS(0.953)PKR;TLDFDPLLS(0.023)PAS(0.977)PKR ; 105.79 0.0017895 53727000 7111.7 6494.9 5506.5 6526.5 6691.1 5970.4 5834 6757.3 6335.4 6741.8 TRUE FALSE FALSE 6278.077307 6695.000171 5804.198046 6792.67888 6197.510884 5856.524567 6059.019334 7526.523718 6074.25213 6701.699474 0.936788845 0.999000358 0.866078533 1.013575572 0.924767055 0.873886481 0.904101916 1.123076877 0.906374891 1 12.71031128 -9.385194013 0.919750666 1.002527778 0.949041853 0 0.07788963 1.545821867 2.154596765 0.059153411 0.012573555 4.12E-10 9.385194013 -0.053485925 DLGGACPPQDHDMQGLAERIS(ph)VL ddPTM_HeLa_CUDC101_4h_R1 1 DLGGACPPQDHDMQGLAERISVL 23 1 Q9BZL6-2;Q9BZL6;Q9BZL6-3 Q9BZL6-2 PRKD2 Serine/threonine-protein kinase D2 1 0 DLGGACPPQDHDMQGLAERIS(1)VL 68.834 0.0012605 3278000 2387.6 1598.8 2277.9 2087.7 2041.8 2165.8 1801.9 1736.3 1443.1 1641.8 TRUE FALSE FALSE 2107.729147 1648.057133 2401.050164 2172.84543 1891.180482 2124.490973 1871.399887 1933.953374 1383.614807 1632.034501 1.291473401 1.009817582 1.471200617 1.331372241 1.158787073 1.301743911 1.146666866 1.184995399 0.847785268 1 10.67245584 -9.385022643 0.833371348 0.980910222 1.242216701 0.463214235 0.12857208 0.641560809 0.69911573 0.114387521 0.022055718 4.12E-10 9.385022643 0.261306478 EGSVLDILKS(ph)PGFASPK ddPTM_HeLa_CUDC101_4h_R1 1 EGSVLDILKSPGFASPK 17 1 P49790-3;P49790 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 EGSVLDILKS(0.974)PGFAS(0.026)PK 80.752 0.0065829 36318000 2586.3 2632.1 2339.3 2431 3194.6 2518 2133.9 1694.3 2603.9 3323.8 TRUE FALSE FALSE 2283.137835 2713.191881 2465.769634 2530.146688 2958.940723 2469.973345 2216.205238 1887.172263 2496.56614 3304.02989 0.691016096 0.821176555 0.746291564 0.765775968 0.895555071 0.747563862 0.670758229 0.571172879 0.755612456 1 11.69001102 -9.384781948 0.81965593 1.022010314 0.740697894 0.033475536 0.111257713 0.461537905 0.482524725 0.087835681 0.016671773 4.12E-10 9.384781948 -0.28131242 GLDS(ph)GAETEEEKDTWEEK ddPTM_HeLa_CUDC101_4h_R1 2 GLDSGAETEEEKDTWEEK 18 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GLDS(0.832)GAET(0.168)EEEKDTWEEK;GLDS(0.526)GAET(0.474)EEEKDTWEEK ; 103.73 0.00069727 57109000 2401.5 2638.9 2460.3 2645.6 2967.8 2621.7 1885.93 1968.62 3096.8 3765.5 TRUE FALSE FALSE 2119.99981 2720.201381 2593.31126 2753.499003 2748.871307 2571.695441 1958.670952 2192.719743 2969.148593 3743.102639 0.566375014 0.726723695 0.692823978 0.735619423 0.734383097 0.687049138 0.523274711 0.58580273 0.793231947 1 11.87001889 -9.384290184 0.965755563 1.012476234 0.654403003 0.460450961 0.094067 0.250786199 0.394592204 0.065610672 0.014668612 4.13E-10 9.384290184 -0.358073231 SSS(ph)ETILSSLAGSDIVK ddPTM_HeLa_CUDC101_4h_R1 2 SSSETILSSLAGSDIVK 17 0 Q01850 Q01850 CDR2 Cerebellar degeneration-related protein 2 1 0 S(0.112)S(0.112)S(0.732)ET(0.006)ILS(0.033)S(0.005)LAGSDIVK;SS(0.019)S(0.978)ET(0.002)ILSSLAGSDIVK ; 349.44 6.21E-218 71161000 5771.2 4946 4278.3 4379.1 6030.7 5620.8 4666.8 4262.3 4001.7 4148.7 TRUE FALSE FALSE 5094.708685 5098.380398 4509.597839 4557.698626 5585.827276 5513.592605 4846.800039 4747.503003 3836.748232 4124.023348 1.235373385 1.236263708 1.09349474 1.105158298 1.354460633 1.336945051 1.175260087 1.151182378 0.930341055 1 12.00983679 -9.384260864 0.647830322 0.964318669 1.216890192 0.560065043 0.085629938 0.826634584 0.481643718 0.123624557 0.019084377 4.13E-10 9.384260864 0.252571523 DGIEPMWEDEK ddPTM_HeLa_CUDC101_4h_R1 1 DGIEPMWEDEK 11 0 D6RBW1;P06730;P06730-3;P06730-2;H0Y8J7 D6RBW1 EIF4E Eukaryotic translation initiation factor 4E 0 0 164.64 0.00031388 16330000 3451.8 2573.2 2404.8 2490.2 2811.4 2639.2 2416.6 2090.8 2249.1 2330.1 FALSE FALSE TRUE 3047.185237 2652.477242 2534.810762 2591.76112 2604.008623 2588.861657 2509.809072 2328.808221 2156.391146 2316.240462 1.315573787 1.145164885 1.094364253 1.118951664 1.124239329 1.117699868 1.08357017 1.00542593 0.930987599 1 11.17756932 -3.419016599 0.724554099 1.14608473 0.639089794 0 0.09972381 13.51378787 2.077156989 0.019116779 7.466162484 0.000381051 3.419016599 -0.506994936 NTGVSPASRPSPGTPT(ph)SPSNLTSGLK ddPTM_HeLa_CUDC101_4h_R1 1 NTGVSPASRPSPGTPTSPSNLTSGLK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 NTGVSPASRPS(0.001)PGT(0.001)PT(0.461)S(0.461)PS(0.043)NLT(0.023)S(0.01)GLK 58.626 0.0060981 115190000 1548.7 1273.9 1563.7 1468.1 1516.2 1580.2 1499.2 1670.5 1910.3 2004.8 TRUE FALSE FALSE 1367.163734 1313.147349 1648.238352 1527.975464 1404.352947 1550.060318 1557.024646 1860.662968 1831.556625 1992.87536 0.68602571 0.658920962 0.827065448 0.76671903 0.704686793 0.777800935 0.781295548 0.93365747 0.919052271 1 10.96063577 -9.38410877 1.104063338 1.000248164 0.758386232 0.487338036 0.077246746 0.283645008 0.617532505 0.05273982 0.013488747 4.13E-10 9.38410877 -0.241861933 DGLAFNALIHR ddPTM_HeLa_CUDC101_4h_R1 4 DGLAFNALIHR 11 0 O43707;M0QZQ3;Q9H254-2;C9JY79;Q9H254-4;Q9H254 O43707;C9JY79 ACTN4;SPTBN4 "Alpha-actinin-4;Spectrin beta chain, non-erythrocytic 4" 0 0 ;;; ;;; 141.89 0.00032973 43843200 17608.4 12464.14 9875.97 11938.34 11765.97 12326.45 11141.38 10295.82 10607.89 12691.87 FALSE FALSE TRUE 15544.37004 12848.14538 10409.89481 12425.23711 10898.01783 12091.3435 11571.10676 11467.85453 10170.62828 12616.37819 1.232078637 1.018370342 0.825109604 0.984849766 0.863799235 0.958384674 0.917149643 0.90896566 0.806144848 1 13.62301019 -6.995441487 11.91344285 1.110420128 0.914238267 0 0.117062435 0.143481473 349.8272858 0.014908353 0.019356326 1.01E-07 6.995441487 -0.196181861 GNAEGS(ph)S(ph)DEEGKLVIDEPAKEK ddPTM_HeLa_CUDC101_4h_R1 3 GNAEGSSDEEGKLVIDEPAKEK 22 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 0 GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK;GNAEGS(1)S(1)DEEGKLVIDEPAKEK ;; 69.081 0.0015918 720100000 15566.4 14333.2 13124 11784.7 13749.5 13345.7 12390.1 12467.5 15704.2 18885.4 TRUE FALSE FALSE 13741.73019 14774.7889 13833.52314 12265.331 12735.22678 13091.15301 12867.99031 13886.7498 15056.86623 18773.0688 0.731991681 0.787020442 0.736881289 0.65334715 0.678377463 0.697336868 0.685449483 0.739716556 0.802046079 1 14.19637688 -9.38362736 0.396902664 1.107113206 0.689015326 0.457221608 0.069338615 0.490195404 0.094452871 0.087864855 0.011416273 4.13E-10 9.38362736 -0.418097881 DGLGFCALIHR ddPTM_HeLa_CUDC101_4h_R1 4 DGLGFCALIHR 11 0 P12814-4;P12814-3;P12814;P12814-2;H9KV75;G3V2N5;G3V2W4;G3V2X9 P12814-4 ACTN1 Alpha-actinin-1 0 0 ;;; ;;; 147.3 0.00083358 17187350 34887.56 27743.36 20336.54 24054.49 25236.55 23674.91 23012.82 21191.2 20524.12 11049.14 FALSE FALSE TRUE 30798.0931 28598.10004 21435.99487 25035.53607 23374.89998 23223.35054 23900.43218 23603.52055 19678.10709 10983.41922 2.804053317 2.603752024 1.951668641 2.279393654 2.128198834 2.114400813 2.176046611 2.149013897 1.791619412 1 13.42303963 -9.445995446 1.172718073 0.998376613 2.313327613 0.473575486 0.333905535 0.191615186 0.470454366 0.203783458 0.050500535 3.58E-10 9.445995446 1.314951 FQSPQIQATIS(ph)PPLQPK ddPTM_HeLa_CUDC101_4h_R1 2 FQSPQIQATISPPLQPK 17 0 A0A087WYN9;Q7Z478 A0A087WYN9 DHX29 ATP-dependent RNA helicase DHX29 1 0 FQSPQIQAT(0.06)IS(0.94)PPLQPK;FQSPQIQAT(0.035)IS(0.965)PPLQPK ; 134.08 0.00023834 187831000 9465.5 8092.8 8598.8 8049.2 8875.6 8984.9 8921.3 8184.2 8887.7 9780.1 TRUE FALSE FALSE 8355.968439 8342.129576 9063.677138 8377.481168 8220.864671 8813.528002 9265.397529 9115.856246 8521.345244 9721.92753 0.859497092 0.858073623 0.932292193 0.861709897 0.845600283 0.906561788 0.953041205 0.93765935 0.876507793 1 13.24702666 -9.382919782 1.090032019 1.000422522 0.891468275 0 0.05194601 0.329039381 0.695139991 0.027424508 0.006937734 4.14E-10 9.382919782 -0.108954247 GRAEGEWEDQEALDYFS(ph)DK ddPTM_HeLa_CUDC101_4h_R1 1 GRAEGEWEDQEALDYFSDK 19 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 GRAEGEWEDQEALDYFS(1)DK 155.16 1.55E-05 2907600 1451.1 1345.9 890.52 1107.2 1104.7 1189.2 1320.3 1197.6 1809.2 957.6 TRUE FALSE FALSE 1281.004258 1387.365584 938.6642049 1152.356402 1023.208482 1166.517991 1371.224413 1333.929943 1734.62401 951.9041526 1.345728196 1.457463527 0.986091092 1.210580286 1.074907047 1.225457404 1.440506809 1.401328001 1.82226751 1 9.894672505 -9.382817297 1.096024698 0.999289703 1.26690376 0 0.294289504 0.516518194 1.105641947 0.105935502 0.026949187 4.14E-10 9.382817297 0.267614056 AASGGSGS(ph)ENVGPPAAAVPGPLSR ddPTM_HeLa_CUDC101_4h_R1 1 AASGGSGSENVGPPAAAVPGPLSR 24 0 Q9UL54-2 Q9UL54-2 1 0 AAS(0.201)GGS(0.311)GS(0.488)ENVGPPAAAVPGPLSR 95.344 1.85E-05 9730200 641.92 593.65 482.77 544.46 507.57 391.8 339.05 682.58 614.09 378.94 TRUE FALSE FALSE 566.6751107 611.9396529 508.8700065 566.6654322 470.1275723 384.3270678 352.1272721 760.2821481 588.7769503 376.686048 1.504369789 1.624534957 1.350912807 1.504344095 1.248062079 1.020284849 0.934803065 2.018344327 1.56304422 1 8.557218788 -9.382582986 1.13479692 1.002313225 1.385991724 0 0.337314711 0.639001665 1.485623882 0.190059879 0.050050104 4.14E-10 9.382582986 0.383678499 DGLQNEK(ac)NIVSTPVK ddPTM_HeLa_CUDC101_4h_R1 2 DGLQNEKNIVSTPVK 15 1 P35914-3;P35914-2;P35914 P35914-3 HMGCL "Hydroxymethylglutaryl-CoA lyase, mitochondrial" 0 1 ; DGLQNEK(1)NIVSTPVK;DGLQNEK(1)NIVSTPVK 330.68 5.23E-143 6145200 2262.6 1814.68 1499.79 1913.44 1848.38 1580.58 1357.84 1420.93 1382.42 2094.67 FALSE TRUE FALSE 1997.381458 1870.58814 1580.873184 1991.478354 1712.02869 1550.43307 1410.212344 1582.682928 1325.436062 2082.21081 0.95925996 0.898366357 0.759228209 0.956424942 0.822216791 0.744609077 0.677266844 0.760097354 0.636552292 1 11.02390042 -5.735044921 0.352084015 1.006152103 0.63417872 0 0.128953146 0.906695208 0.166483075 0.025594211 0.129129851 1.84E-06 5.735044921 -0.371973383 TTS(ph)PPEVSGYSYEK ddPTM_HeLa_CUDC101_4h_R1 2 TTSPPEVSGYSYEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.357)T(0.058)S(0.585)PPEVSGYSYEK;T(0.216)T(0.046)S(0.738)PPEVSGYSYEK ; 169.17 5.46E-07 70212000 7882.3 6889.6 7105.7 6501.5 8166.8 7733 7006.2 6341.4 8393.5 8179.6 TRUE FALSE FALSE 6958.348743 7101.86041 7489.855636 6766.659272 7564.351435 7585.505909 7276.431481 7063.279343 8047.516377 8130.947375 0.855785731 0.873435786 0.921154115 0.832210437 0.930316123 0.932917846 0.89490574 0.86869082 0.98973908 1 12.98920774 -9.382091075 1.063662553 1.001103752 0.887868077 0.646290742 0.031347799 0.270653658 0.539346761 0.023233499 0.005742882 4.15E-10 9.382091075 -0.113235674 DGMDNQGGYGSVGR ddPTM_HeLa_CUDC101_4h_R1 2 DGMDNQGGYGSVGR 14 0 P31942;P31942-4;P31942-3;P31942-2 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 0 0 ; ; 185.99 2.53E-10 136767000 1300.09 1355.54 1356.81 1490.51 1655.23 1195.17 1385.47 1170.76 1537.01 1611.66 FALSE FALSE TRUE 1147.695421 1397.302581 1430.163253 1551.29944 1533.126981 1172.374124 1438.908042 1304.034586 1473.653797 1602.073775 0.71638113 0.872183668 0.892695003 0.968307118 0.956964033 0.731785354 0.898153421 0.813966627 0.919841408 1 10.64572487 -9.679623458 1.558125158 0.999648008 0.838867717 0.151853138 0.084039568 0.402840648 1.767676458 0.065724262 0.014786924 2.09E-10 9.679623458 -0.160780291 DGMEYPFIGEGEPHVDGEPGDLR ddPTM_HeLa_CUDC101_4h_R1 3 DGMEYPFIGEGEPHVDGEPGDLR 23 0 H7C2Y5;Q9UBS4 H7C2Y5 DNAJB11 DnaJ homolog subfamily B member 11 0 0 ;; ;; 136.64 1.80E-07 16351300 7281.4 5773.8 5490.2 5451.8 6763.5 5680.9 5353.7 6106.4 6156.3 5533.1 FALSE FALSE TRUE 6427.88533 5951.683934 5787.016819 5674.147969 6264.57008 5572.546298 5560.194002 6801.527893 5902.534708 5500.188875 1.168666291 1.082087192 1.052148744 1.03162784 1.138973628 1.013155443 1.010909648 1.236598969 1.073151276 1 12.42526545 -9.663704369 1.528384779 1.000246565 1.097603003 0.047031399 0.072176834 0.510187129 2.153354565 0.049580048 0.011253237 2.17E-10 9.663704369 0.097356438 DGPEETDWWWAALHGQEGYVPR ddPTM_HeLa_CUDC101_4h_R1 2 DGPEETDWWWAALHGQEGYVPR 22 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 0 0 ; ; 157.97 1.92E-07 10439900 4526.2 3843.5 3401.19 3537.79 4180.68 4203.8 3741.34 3701.8 4115.41 4234.1 FALSE FALSE TRUE 3995.645697 3961.913679 3585.068619 3682.076368 3872.279565 4123.619519 3885.644737 4123.197949 3945.771058 4208.915385 0.949329063 0.941314642 0.851779685 0.874827843 0.920018392 0.979734478 0.923193835 0.979634317 0.937479302 1 12.03923279 -8.167857936 0.922930674 0.991580078 0.923256802 0.099250911 0.041775108 0.422010534 0.762881318 0.012951546 0.009016622 6.79E-09 8.167857936 -0.068323276 APYTCGGDSDQY(ph)VLMSSPVGR ddPTM_HeLa_CUDC101_4h_R1 1 APYTCGGDSDQYVLMSSPVGR 21 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 APYTCGGDS(0.001)DQY(0.995)VLMS(0.003)S(0.001)PVGR 164.66 2.38E-13 0 517.54 356.5 395.61 481.85 515.3 428.2 345.16 400.37 362.22 305 TRUE FALSE FALSE 456.8747457 367.4833424 416.9978733 501.5019257 477.2873456 420.0327984 358.4729368 445.9465024 347.2891383 303.1858464 1.506913173 1.212072881 1.375387005 1.654107313 1.574240194 1.38539712 1.182353797 1.470868471 1.145466196 1 8.244058596 -9.382028144 0.82410238 0.965268429 1.4243139 0.468636517 0.144939835 0.475127581 0.504278698 0.147832664 0.028323868 4.15E-10 9.382028144 0.459045471 VERPPS(ph)PFSMAPQASLPPVPPR ddPTM_HeLa_CUDC101_4h_R1 1 VERPPSPFSMAPQASLPPVPPR 22 1 A0A1B0GW38;A0A0U1RQX8;P22681 A0A1B0GW38 CBL E3 ubiquitin-protein ligase CBL 1 0 VERPPS(0.992)PFS(0.008)MAPQASLPPVPPR 67.214 0.0029138 38129000 431.98 422.86 448.47 361.07 400.87 514.81 393.48 483.61 501.6 611.19 TRUE FALSE FALSE 381.3439592 435.8878154 472.7156447 375.7959953 371.2986187 504.990857 408.6566554 538.6622076 480.9238357 607.5546147 0.627670254 0.717446308 0.7780628 0.618538624 0.6111362 0.831185946 0.672625383 0.886607055 0.791573011 1 9.246870292 -9.381994503 1.038212178 1.004665139 0.708721827 0.221638305 0.107592117 0.289385916 0.543941521 0.064343967 0.015525858 4.15E-10 9.381994503 -0.295943311 VLST(ph)SPTISK ddPTM_HeLa_CUDC101_4h_R1 1 VLSTSPTISK 10 0 H7C427;A0A087WX19;A0A087WX45;Q6IPM2-2;Q6IPM2-3;Q6IPM2-4;Q6IPM2 H7C427 IQCE IQ domain-containing protein E 1 0 VLS(0.001)T(0.496)S(0.496)PT(0.006)IS(0.002)K 114.71 0.031904 19422000 3467.8 3469.1 3273.4 3482.4 3399.4 3055.1 3346.2 2699.8 3165.1 4368.3 TRUE FALSE FALSE 3061.309741 3575.978859 3450.369905 3624.427324 3148.633035 2996.829058 3475.264055 3007.134319 3034.633238 4342.317157 0.704994506 0.82351858 0.794591869 0.834675864 0.725104344 0.690145134 0.800324787 0.692518351 0.698851127 1 12.08424939 -9.381734813 0.874540425 1.015541772 0.757349637 0 0.106003935 0.273567439 0.336915444 0.049300278 0.01001692 4.15E-10 9.381734813 -0.258192134 SS(ph)PNVANQPPS(ph)PGGK ddPTM_HeLa_CUDC101_4h_R1 3 SSPNVANQPPSPGGK 15 0 A8MQ02;J3KN01;P55196-3;P55196;P55196-5;Q5TIG5;P55196-2;P55196-6;P55196-1 A8MQ02 MLLT4 Afadin 2 0 S(0.139)S(0.861)PNVANQPPS(1)PGGK;S(0.412)S(0.588)PNVANQPPS(1)PGGK;S(0.409)S(0.591)PNVANQPPS(1)PGGK ;; 203.89 6.05E-16 30035700 8526.5 7904 7460.1 7860.8 8216.1 7592.2 7656.4 8202.3 8704.9 9455.7 TRUE FALSE FALSE 7527.036595 8147.512871 7863.415572 8181.397401 7610.014672 7447.391434 7951.709913 9136.016677 8346.080338 9399.457076 0.800794826 0.866806753 0.836581891 0.870411699 0.809622791 0.792321447 0.845975448 0.971972807 0.887932172 1 13.19836171 -9.381395784 1.019510402 1.003228943 0.843364643 0.207967018 0.058873647 0.309023901 0.555919916 0.03685016 0.008738552 4.16E-10 9.381395784 -0.1598643 AGS(ph)PSPQPSGELPR ddPTM_HeLa_CUDC101_4h_R1 1 AGSPSPQPSGELPR 14 0 Q92619 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 AGS(1)PSPQPSGELPR 157.09 6.67E-05 95854000 1125.9 868.8 1011.3 849.54 888.51 984.31 917.51 849.91 756.38 764.74 TRUE FALSE FALSE 993.9237088 895.5666982 1065.973937 884.1879132 822.9663875 965.5359267 952.898668 946.6603189 725.2016963 760.1912925 1.307465264 1.178080711 1.40224434 1.163112393 1.082578024 1.270122318 1.253498531 1.245292242 0.953972643 1 9.57021869 -9.381326786 1.036762489 0.996113209 1.24065699 0.601452978 0.083841986 0.334601897 0.626981638 0.061425734 0.014815489 4.16E-10 9.381326786 0.244543782 QIESSDYDSSSSK(ac)GK(ac)K(ac)SR ddPTM_HeLa_CUDC101_4h_R1 2 QIESSDYDSSSSKGKKSR 18 3 Q9UNL4-2 Q9UNL4-2 ING4 Inhibitor of growth protein 4 0 3 ; QIESSDYDSSSSK(1)GK(1)K(1)SR;QIESSDYDSSSSK(1)GK(1)K(1)SR 284.53 4.85E-158 4548500 494.49 515.93 393.59 579.77 624.076 595.67 650.5 630.82 153.12 241.89 FALSE TRUE FALSE 436.5266318 531.8251918 414.8686659 603.4155266 578.0391568 584.3085872 675.5900029 702.6299989 146.8083288 240.4512275 1.815447716 2.211779899 1.725375538 2.509513188 2.403976735 2.43005034 2.809675833 2.922131054 0.610553459 1 7.909600481 -6.037709552 0.118388315 2.78E-12 4.5395468 0.907948189 0.218349393 2.744855047 0.121296204 1.541667001 3.042673027 9.17E-07 6.037709552 4.5395468 DGQAMLWDLNEGK ddPTM_HeLa_CUDC101_4h_R1 6 DGQAMLWDLNEGK 13 0 D6R9L0;D6R9Z1;D6RFX4;D6RAC2;P63244;H0YAF8;J3KPE3;D6REE5;H0Y8R5;H0YAM7;H0Y8W2 D6R9L0;D6RAC2 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed" 0 0 ;;;;; ;;;;; 256.47 5.27E-69 160523800 11510.97 9977.34 9271.78 8566.96 10605.03 10111.49 8606.04 9220.79 9937.53 9191.56 FALSE FALSE TRUE 10161.67155 10284.73002 9773.040472 8916.357658 9822.718065 9918.630175 8937.977846 10270.44746 9527.900807 9136.888192 1.112158903 1.125627216 1.06962461 0.975863715 1.075061647 1.085558887 0.978229968 1.124064041 1.042794944 1 13.15748719 T(ph)PEPSSPVKEPPPVLAK ddPTM_HeLa_CUDC101_4h_R1 1 TPEPSSPVKEPPPVLAK 17 1 Q86TC9;A0A087WX60;Q86TC9-2 Q86TC9 MYPN Myopalladin 1 0 T(0.704)PEPS(0.148)S(0.148)PVKEPPPVLAK 79.565 0.015489 30775000 1273.9 1150.4 1196.2 994.45 937.55 1178 1125.5 1028.7 1129.5 1544.6 TRUE FALSE FALSE 1124.575373 1185.84246 1260.87019 1035.007969 868.3888044 1155.531613 1168.910912 1145.80305 1082.941532 1535.412651 0.732425497 0.772328182 0.821193045 0.674091078 0.565573564 0.752587008 0.761300821 0.746250885 0.705309763 1 10.58441072 -9.381304611 0.45850297 1.083113994 0.712373201 0 0.11219642 0.861536999 0.225284306 0.151112978 0.019707949 4.16E-10 9.381304611 -0.370740793 TMFAQVES(ph)DDEEAKNEPEWK ddPTM_HeLa_CUDC101_4h_R1 7 TMFAQVESDDEEAKNEPEWK 20 1 Q9NW82 Q9NW82 WDR70 WD repeat-containing protein 70 1 0 T(0.012)MFAQVES(0.988)DDEEAKNEPEWK;T(0.003)MFAQVES(0.997)DDEEAKNEPEWK;T(0.023)MFAQVES(0.977)DDEEAKNEPEWK;TMFAQVES(1)DDEEAKNEPEWK;T(0.001)MFAQVES(0.999)DDEEAKNEPEWK;T(0.017)MFAQVES(0.983)DDEEAKNEPEWK;T(0.008)MFAQVES(0.992)DDEEAKNEPEWK ;;;;;; 81.639 0.0018429 768705500 23163.3 20541.18 20372.05 20779.26 21729.53 22011.08 19937.87 20708.56 22746.3 23973.63 TRUE FALSE FALSE 20448.13309 21174.02941 21473.42465 21626.72804 20126.58586 21591.25532 20706.88032 23065.93876 21808.68789 23831.03378 0.858046414 0.888506542 0.901069792 0.907502723 0.844553621 0.906014213 0.868903989 0.967895013 0.915138138 1 14.54055392 -9.381126974 1.041818008 1.001656421 0.888977911 0.182079883 0.040981754 0.269899319 0.511775305 0.02286978 0.005544648 4.16E-10 9.381126974 -0.11267851 DS(ph)PGAVAAPLISGVEIK ddPTM_HeLa_CUDC101_4h_R1 2 DSPGAVAAPLISGVEIK 17 0 Q5THJ4-2;Q5THJ4;H3BLS7;A0A2R8YD87 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 DS(1)PGAVAAPLISGVEIK;DS(1)PGAVAAPLISGVEIK ; 170.09 5.18E-07 7049200 1362.33 1216.69 1245.19 1086.75 1384.1 1446.03 1127.65 1071.71 1454 1411.96 TRUE FALSE FALSE 1202.639743 1254.174777 1312.508738 1131.072362 1281.997701 1418.449387 1171.143838 1193.709134 1394.065505 1403.561599 0.856848565 0.893565895 0.935127278 0.805858726 0.913388982 1.01060715 0.834408578 0.850485747 0.993234287 1 10.45487667 -9.381121672 1.016502937 1.002407414 0.887314367 0.386934678 0.054800545 0.487196106 0.87026791 0.041773383 0.009880639 4.16E-10 9.381121672 -0.115093047 DGQPCMDHDR ddPTM_HeLa_CUDC101_4h_R1 2 DGQPCMDHDR 10 0 A0A6I8PRU9;A0A6I8PTV8;A0A6I8PIP7;A0A6I8PLB3;A0A6I8PLB8;A0A6I8PRS0;B4DER1;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5-2;Q9P2J5;A0A6I8PS05;A0A6I8PL42 A0A6I8PRU9 LARS "Leucine--tRNA ligase, cytoplasmic" 0 0 ; ; 147.28 0.00061952 7375300 6960.7 5319.1 6727.9 7296.1 6312.1 6081.6 5554.4 4013.9 6169.4 4364.7 FALSE FALSE TRUE 6144.777298 5482.975166 7091.630625 7593.666494 5846.468958 5965.603613 5768.635069 4470.826151 5915.094721 4338.73857 1.416258942 1.263725638 1.634491341 1.75020144 1.347504318 1.37496268 1.329565028 1.030443775 1.363321303 1 12.08305994 -9.109334572 0.769056826 0.986589931 1.40709768 0.03270044 0.215198512 0.598903202 0.612421701 0.151941999 0.039551253 7.77E-10 9.109334572 0.420507749 SLPS(ph)SSQLKGSPQAISR ddPTM_HeLa_CUDC101_4h_R1 1 SLPSSSQLKGSPQAISR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 S(0.001)LPS(0.326)S(0.326)S(0.326)QLKGS(0.021)PQAIS(0.001)R 61.495 0.026114 80022000 1164 919.32 1074 1119.6 1178.1 1084.1 1213.6 1016.2 1787.9 1340.2 TRUE FALSE FALSE 1027.557685 947.6431595 1132.063689 1165.262127 1091.19391 1063.422599 1260.408959 1131.8801 1714.202005 1332.228431 0.771307428 0.711321826 0.849751936 0.874671415 0.81907418 0.798228423 0.946090722 0.849614131 1.286717777 1 10.37962576 -9.380560127 1.1283253 0.999110856 0.824500597 0.478126016 0.110879408 0.31742589 0.728605754 0.042844996 0.011252279 4.16E-10 9.380560127 -0.174610259 ELPDSS(ph)SPVPANNIR ddPTM_HeLa_CUDC101_4h_R1 1 ELPDSSSPVPANNIR 15 0 A0A0C4DH56;Q9BWT3-2;Q9BWT3 A0A0C4DH56 PAPOLG Poly(A) polymerase gamma 1 0 ELPDS(0.001)S(0.499)S(0.499)PVPANNIR 95.195 0.0079143 13355000 2575.9 2238.9 1991.8 1915.5 2297.5 2190.1 1572.5 1455.6 2448.8 1298 TRUE FALSE FALSE 2273.956907 2307.877855 2099.482733 1993.622369 2128.018002 2148.327491 1633.151852 1621.29962 2347.859428 1290.279438 1.762375528 1.788665142 1.627153522 1.545108998 1.649269096 1.665009476 1.265735005 1.256549219 1.819651897 1 10.33346783 -9.380466699 1.105745978 1.000141739 1.587742002 0 0.303876112 0.291528762 0.637867741 0.131531388 0.033868795 4.16E-10 9.380466699 0.587600263 T(ph)DTEEEEEQQQQQK ddPTM_HeLa_CUDC101_4h_R1 1 TDTEEEEEQQQQQK 14 0 Q9UGU0-2;Q9UGU0;A9JX13 Q9UGU0-2 TCF20 Transcription factor 20 1 0 T(0.987)DT(0.013)EEEEEQQQQQK 236.12 8.08E-55 0 333.5 338.19 348.83 302 218.76 422.68 322.94 235.56 452.83 441.79 TRUE FALSE FALSE 294.4076356 348.609233 367.688805 314.3168654 202.6225106 414.6180832 335.395904 262.3751982 434.1641557 439.1622134 0.670384716 0.793805164 0.83725055 0.715719285 0.461384209 0.944111471 0.763717583 0.59744484 0.988619108 1 8.778610117 -9.380446017 0.824679778 1.022550235 0.723483983 0.429468596 0.124916516 0.607761677 0.646746255 0.123180892 0.023672938 4.16E-10 9.380446017 -0.299066252 DGQVINETSQHHDDLE ddPTM_HeLa_CUDC101_4h_R1 4 DGQVINETSQHHDDLE 16 0 P08670 P08670 VIM Vimentin 0 0 ;;; ;;; 127.75 0.0004616 138678000 21712 17699.9 17842.1 16970.3 22819.7 18418.9 18462.5 19336 21137.3 21028.5 FALSE FALSE TRUE 19166.95227 18245.21294 18806.6979 17662.42219 21136.33619 18067.59017 19174.60481 21537.13208 20266.01155 20903.42155 0.916928945 0.872833804 0.899694715 0.844953643 1.011142417 0.864336498 0.917295035 1.030316115 0.969506906 1 14.35145149 -9.007882731 0.909099239 0.997816523 0.916946503 0.163040212 0.057204782 0.619035801 0.964123792 0.030802622 0.010545543 9.82E-10 9.007882731 -0.08087002 DGQWFTDWDAVPHSR ddPTM_HeLa_CUDC101_4h_R1 4 DGQWFTDWDAVPHSR 15 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 0 ;;; ;;; 217.79 9.19E-25 157603000 17854 16955.7 16536.5 15886.7 18156.2 17957 17214.3 17194.7 17373.3 16987.5 FALSE FALSE TRUE 15761.18118 17478.08502 17430.51321 16534.62829 16816.8533 17614.50014 17878.26132 19152.07514 16657.16522 16886.45759 0.933362198 1.035035615 1.032218457 0.979165003 0.9958781 1.043113989 1.058733676 1.134167722 0.986421523 1 14.04357909 -1.000000005 0.430283032 0.973748206 4.197693831 0.685545636 0.028990276 31.88053666 0.357708833 0.008055703 89.96857875 0.099999999 1.000000005 3.223945624 DGRHPQGEQMYR ddPTM_HeLa_CUDC101_4h_R1 5 DGRHPQGEQMYR 12 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ;;;; ;;;; 123.01 0.0016225 37759000 4084.93 3974.88 6007.07 4908.88 7886.51 5265.09 5020.86 5907.67 5634.17 4657.39 FALSE FALSE TRUE 3606.100698 4097.341341 6331.830375 5109.085344 7304.737869 5164.66718 5214.516252 6580.175273 5401.927128 4629.687637 0.778907991 0.885014641 1.367658225 1.103548607 1.577803611 1.115554134 1.126321398 1.421300051 1.16680164 1 12.17669914 -6.76930402 24.99177725 0.891884661 1.275444815 0.445366312 0.172808648 89.70839478 285069.5688 0.024695512 0.032788222 1.70E-07 6.76930402 0.383560154 SSLSNNECGSLDKT(ph)SPEMSNSNNDER ddPTM_HeLa_CUDC101_4h_R1 1 SSLSNNECGSLDKTSPEMSNSNNDER 26 1 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 SSLSNNECGS(0.002)LDKT(0.491)S(0.491)PEMS(0.016)NS(0.001)NNDER 99.097 4.05E-06 14968000 1257.2 1357.5 794 1280.5 1307.9 1567.8 1391.8 1203.2 1149.8 563.15 TRUE FALSE FALSE 1109.832922 1399.322966 836.9260417 1332.724325 1211.418823 1537.896827 1445.482192 1340.167424 1102.404757 559.8003588 1.982551287 2.499682153 1.495043775 2.380713595 2.164019375 2.747223726 2.582138739 2.394009585 1.969281977 1 9.128768601 -9.379890289 0.20150017 2.99E-11 2.753306679 0.330034179 0.415970253 2.930204186 0.177670714 2.186265272 0.466179049 4.17E-10 9.379890289 2.753306679 EVLDEDT(ph)DEEKETLK ddPTM_HeLa_CUDC101_4h_R1 5 EVLDEDTDEEKETLK 15 1 Q9Y3P9 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 EVLDEDT(1)DEEKETLK;EVLDEDT(0.998)DEEKET(0.002)LK;EVLDEDT(1)DEEKETLK;EVLDEDT(1)DEEKETLK;EVLDEDT(0.938)DEEKET(0.062)LK ;;;; 104.16 0.0047441 365182300 11058.9 9769.5 10150.96 9871.75 10247.3 9831 9158.1 10053.03 10635.08 11186.91 TRUE FALSE FALSE 9762.592506 10070.48672 10699.7516 10274.36263 9491.377094 9643.490055 9511.330985 11197.4263 10196.6975 11120.36976 0.877901789 0.905589196 0.962175884 0.923922752 0.853512725 0.867191493 0.85530708 1.006929314 0.91693871 1 13.44091714 -9.37980228 0.95726076 1.003662731 0.902155282 0.0435448 0.05270375 0.512886259 0.7912796 0.037828045 0.008438659 4.17E-10 9.37980228 -0.101507449 MARALRNY(ph)GRS(ph)GEIT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 MARALRNYGRSGEITK 16 3 Q8N5J4 Q8N5J4 SPIC Transcription factor Spi-C 3 0 MARALRNY(1)GRS(1)GEIT(1)K 59.418 0.0027806 0 2793.2 2345.7 2901.8 2825.3 2220.8 2757.2 2329.1 2265.7 3213.2 2990.3 TRUE FALSE FALSE 2465.78533 2417.968237 3058.680085 2940.527946 2056.976008 2704.611004 2418.934167 2523.61813 3080.750536 2972.513563 0.829528706 0.813442289 1.028987764 0.989239539 0.691998864 0.909873394 0.813767243 0.848984564 1.036412609 1 11.53746768 -9.379478235 0.994392172 1.003671251 0.864691689 0.301969177 0.091112172 0.690896004 1.1704969 0.07086524 0.016434607 4.17E-10 9.379478235 -0.138979561 AASPYSQRPAS(ph)PTAIR ddPTM_HeLa_CUDC101_4h_R1 2 AASPYSQRPASPTAIR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 AASPYSQRPAS(0.771)PT(0.229)AIR;AASPYS(0.001)QRPAS(0.915)PT(0.085)AIR ; 238.83 7.81E-43 35252000 4000.1 3707 3605.1 3484 3673.5 3559.6 3240.1 3464.7 4148.1 5166.5 TRUE FALSE FALSE 3531.214342 3821.208276 3800.002611 3626.092579 3402.513224 3491.706561 3365.071742 3859.107443 3977.113562 5135.769428 0.687572601 0.744038129 0.739909115 0.706046607 0.662512847 0.67987993 0.655222511 0.751417582 0.774394882 1 12.32636472 -9.37936653 0.558069198 1.066419029 0.692832253 0.335695241 0.07716622 0.278286125 0.11371251 0.056007719 0.007878243 4.17E-10 9.37936653 -0.373586776 T(ph)KPERT(ph)T(ph)SAGTIT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 TKPERTTSAGTITPK 15 2 H0YF18;Q5JPC9;H7C556;D3YTG3;Q7Z7G0 H0YF18 ABI3BP;DKFZp667H216 Target of Nesh-SH3 4 0 T(0.997)KPERT(0.796)T(0.796)S(0.402)AGT(0.189)IT(0.82)PK 53.946 0.0402 2249300 579.88 568.57 477.35 527.12 601.14 489.82 495.47 648.05 677.22 677.67 TRUE FALSE FALSE 511.9073454 586.0869678 503.1569849 548.618232 556.7950998 480.4774996 514.5804439 721.8213925 649.304705 673.6391887 0.75991325 0.870030986 0.746923566 0.814409615 0.826547964 0.713256455 0.763881396 1.071525239 0.963876087 1 9.395832259 -9.379267783 1.00577385 1.004475949 0.810350814 0.306152201 0.095528316 0.481810367 0.839357175 0.069335528 0.016270259 4.18E-10 9.379267783 -0.194125135 MAPPVDDLS(ph)PKK ddPTM_HeLa_CUDC101_4h_R1 1 MAPPVDDLSPKK 12 1 Q92576-2;Q92576;E7EVH3;E7ER40 Q92576-2 PHF3 PHD finger protein 3 1 0 MAPPVDDLS(1)PKK 64.244 0.037282 17246000 2745.7 2287.9 2496.7 2438.2 2462.4 2296.5 2087.7 2570.9 2566.7 2817.6 TRUE FALSE FALSE 2423.853208 2358.387487 2631.679154 2537.640335 2280.753658 2252.698089 2168.223288 2863.560864 2460.89954 2800.84079 0.865401995 0.842028399 0.939603266 0.906028056 0.814310355 0.804293517 0.774133002 1.022393302 0.878628856 1 11.45164426 -9.37926767 0.510007694 1.034876759 0.861114565 0 0.078609043 1.464281773 0.485909712 0.129237843 0.017416796 4.18E-10 9.37926767 -0.173762194 DGSPIADDLLEK ddPTM_HeLa_CUDC101_4h_R1 1 DGSPIADDLLEK 12 0 H0YAF7;H0YAK4;E9PCB6;Q9BYT8 H0YAF7 NLN "Neurolysin, mitochondrial" 0 0 110.08 0.0018068 0 1178.2 1283.6 1068.2 1142.9 1459.8 959.18 865.91 854.24 1168 906.78 FALSE FALSE TRUE 1040.093182 1323.146195 1125.950123 1189.512402 1352.113462 940.8852396 899.3084388 951.4832286 1119.854546 901.3864322 1.153881559 1.467901166 1.24913143 1.319647556 1.500037513 1.04382006 0.99769467 1.055577491 1.242368984 1 9.816001924 -8.217071126 1.239386763 1.031586211 1.229448582 0.001625507 0.175508011 0.485786034 1.530322049 0.046918064 0.035166222 6.07E-09 8.217071126 0.197862371 DGSVAIASK(ac)PR ddPTM_HeLa_CUDC101_4h_R1 2 DGSVAIASKPR 11 1 P55809 P55809 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" 0 1 ; DGSVAIASK(1)PR;DGSVAIASK(1)PR 146.71 0.00014144 4739900 2000.67 1530.78 1355.12 1650.55 2484.2 2071.3 2375.5 2034.63 1258.79 1433.38 FALSE TRUE FALSE 1766.154495 1577.941517 1428.381886 1717.866563 2300.945515 2031.793404 2467.123831 2266.244055 1206.902143 1424.854192 1.239533494 1.107440695 1.002475828 1.205643758 1.614863842 1.425965839 1.731492138 1.590509448 0.847035542 1 10.47659858 -5.831883003 4.141544242 1.107838014 1.591175922 0.80608873 0.125589526 0.069642392 2.33382577 0.017027734 0.032307627 1.47E-06 5.831883003 0.483337907 DGSYAWEIKDFLVGQDR ddPTM_HeLa_CUDC101_4h_R1 1 DGSYAWEIKDFLVGQDR 17 1 Q14696 Q14696 MESDC2 LDLR chaperone MESD 0 0 67.685 0.036564 12960000 1213.4 1164.1 905.8 1495.2 1333 1321.7 1120.2 1001.6 1611.4 1576.7 FALSE FALSE TRUE 1071.167091 1199.964541 954.7702879 1556.180719 1234.667246 1296.490775 1163.406489 1115.618095 1544.97741 1567.321718 0.683437918 0.765614696 0.609173137 0.992891696 0.787756101 0.827201435 0.742289522 0.711799041 0.985743636 1 10.61408563 -9.415145419 1.122143602 1.001055595 0.762245546 0.47565053 0.095454802 0.35908223 0.803065904 0.067285682 0.0167107 3.84E-10 9.415145419 -0.238810049 ERESSANNSVS(ph)PSESLR ddPTM_HeLa_CUDC101_4h_R1 3 ERESSANNSVSPSESLR 17 1 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 ERESSANNS(0.005)VS(0.995)PSESLR;ERESSANNS(0.018)VS(0.981)PS(0.001)ESLR;ERESSANNSVS(0.907)PS(0.091)ES(0.002)LR ;; 158.15 3.09E-05 131442000 3513.6 2892.68 3094.26 3412.9 3481.6 3291.4 2857.2 2943.74 3634.66 3520.5 TRUE FALSE FALSE 3101.741134 2981.800042 3261.545055 3552.092814 3224.769304 3228.622029 2967.403161 3278.843463 3484.837776 3499.559909 0.886323199 0.852050006 0.931987204 1.015011289 0.921478525 0.922579442 0.847936094 0.936930228 0.995793147 1 11.77295779 -9.379193483 1.116500221 0.999756046 0.91244887 0.353769053 0.045005699 0.476624593 1.067601511 0.032035286 0.008343182 4.18E-10 9.379193483 -0.087307177 AAIPPPVYEEQDRPRS(ph)PTGPSNSFLANMGGTVAHK ddPTM_HeLa_CUDC101_4h_R1 2 AAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAHK 35 2 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 0 AAIPPPVY(0.021)EEQDRPRS(0.395)PT(0.132)GPS(0.132)NS(0.315)FLANMGGT(0.006)VAHK;AAIPPPVY(0.02)EEQDRPRS(0.374)PT(0.374)GPS(0.161)NS(0.07)FLANMGGTVAHK ; 67.788 1.57E-05 160800000 2499.2 2444.7 2018.76 1894.01 2972.3 2150.8 2207.5 2214.1 2472.6 2679.5 TRUE FALSE FALSE 2206.247565 2520.018309 2127.900272 1971.255914 2753.039351 2109.777073 2292.644014 2466.144194 2370.678381 2663.562215 0.828307127 0.946108296 0.798892648 0.740082549 1.033593034 0.792088528 0.860743557 0.925881956 0.890040551 1 11.37914126 -9.379058427 0.943862885 1.005628925 0.862025397 0.060783183 0.087474033 0.61842015 0.921808947 0.06411935 0.01411778 4.18E-10 9.379058427 -0.143603528 DGTGVVEFVR ddPTM_HeLa_CUDC101_4h_R1 2 DGTGVVEFVR 10 0 J3KTL2;Q07955;J3KSR8;Q07955-3;Q07955-2 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 0 ; ; 134.77 0.0099266 28679000 4020.5 3043.7 3274 3384.5 3668.7 3335.3 3306.5 3180 3579.1 3686.4 FALSE FALSE TRUE 3549.223085 3137.472789 3451.002343 3522.534539 3398.06731 3271.684709 3434.032813 3541.998346 3431.567983 3664.473129 0.968549355 0.8561866 0.941745845 0.961266304 0.927300376 0.892811762 0.937115021 0.966577792 0.936442392 1 11.83939007 -7.490418584 11.29805335 0.986154192 0.9262106 0.206331826 0.03449907 0.528335731 182.5897594 0.005446288 0.00603683 3.23E-08 7.490418584 -0.059943592 AAAGPLDMS(ph)LPSTPDIK ddPTM_HeLa_CUDC101_4h_R1 2 AAAGPLDMSLPSTPDIK 17 0 K7ELQ4;P17544-4;P17544-2;P17544 K7ELQ4 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 AAAGPLDMS(0.464)LPS(0.464)T(0.071)PDIK;AAAGPLDMS(0.863)LPS(0.069)T(0.069)PDIK ; 125.22 9.20E-05 0 1801.94 1805.29 1612.4 1651.14 2056.47 1798.69 1919.38 2295.78 2187.98 2795.96 TRUE FALSE FALSE 1590.719325 1860.908845 1699.571221 1718.480626 1904.768305 1764.382985 1993.41113 2557.122315 2097.790538 2779.329506 0.572339236 0.669553157 0.61150404 0.618307625 0.685333747 0.634823248 0.717227348 0.920050073 0.754782955 1 11.44052117 -9.378810645 1.060860761 1.003218569 0.666657285 0.221570181 0.116558671 0.26588062 0.527176447 0.067671549 0.016763257 4.18E-10 9.378810645 -0.336561283 GSLEMS(ph)SDGEPLSR ddPTM_HeLa_CUDC101_4h_R1 1 GSLEMSSDGEPLSR 14 0 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 GSLEMS(0.5)S(0.5)DGEPLSR 124.81 0.00015244 0 1742.3 1284.4 855 994.3 1150.6 774.88 661.31 501.68 1445.7 1442 TRUE FALSE FALSE 1538.070235 1323.970842 901.2238862 1034.851852 1065.72253 760.100455 686.8169482 558.7892233 1386.107634 1433.42292 1.073005192 0.923642857 0.628721554 0.721944541 0.743480878 0.5302695 0.479144667 0.389828581 0.966991399 1 10.48524861 -6.006108516 0.573589793 1.046257305 0.398303505 0.850547252 0.087372212 0.262135608 0.153563671 0.022489167 0.080015494 9.86E-07 6.006108516 -0.6479538 down KTPGPGK(ac)LPPTLSSK ddPTM_HeLa_CUDC101_4h_R1 1 KTPGPGKLPPTLSSK 15 2 A0A087X0M4;Q9BWU0 A0A087X0M4 SLC4A1AP Kanadaptin 0 1 K(0.036)TPGPGK(0.964)LPPTLSSK 100.11 0.023204 1860700 912.36 979.35 1198.7 1475.6 1816.8 2167 1860.1 2142 471.13 575.21 FALSE TRUE FALSE 805.4145438 1009.522613 1263.505348 1535.781346 1682.778284 2125.668085 1931.84468 2385.836622 451.709822 571.7886253 1.408587908 1.765552108 2.209742013 2.68592497 2.943007624 3.717576726 3.378599354 4.172584966 0.789994417 1 9.15933811 -5.977984292 0.494673387 1.050650083 4.243850754 0.970276953 0.190313411 0.11693496 0.048926567 0.042933759 0.166766954 1.05E-06 5.977984292 3.193200671 up TPTCQSSTDCS(ph)PYAR ddPTM_HeLa_CUDC101_4h_R1 1 TPTCQSSTDCSPYAR 15 0 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 TPTCQS(0.046)S(0.15)T(0.081)DCS(0.723)PYAR 132.15 0.00063042 8846500 1426.6 1037.9 903.09 1123.6 1128.3 934.77 1018.7 485.27 1315.2 198.91 TRUE FALSE FALSE 1259.376111 1069.876469 951.9137771 1169.425265 1045.067557 916.9408197 1057.9916 540.5111753 1260.986899 197.7268745 6.369271319 5.410880396 4.814286271 5.914346584 5.285409784 4.637411187 5.350772893 2.733625243 6.377417853 1 7.627365161 -9.378766896 1.054774775 0.95325455 5.191996458 0 1.882364087 0.214399405 0.419260398 0.685805457 0.168922093 4.18E-10 9.378766896 4.238741908 DGVVEITGKHEER ddPTM_HeLa_CUDC101_4h_R1 1 DGVVEITGKHEER 13 1 P04792 P04792 HSPB1 Heat shock protein beta-1 0 0 68.676 0.031232 11943000 9435.1 11419 10825 10893 15986 11570 12940 15894 10778 7384.2 FALSE FALSE TRUE 8329.131881 11770.80586 11410.23224 11337.26362 14806.74463 11349.32153 13439.10013 17703.30871 10333.72628 7340.27845 1.134716065 1.60359119 1.554468583 1.544527732 2.017191136 1.546170435 1.830870617 2.411803426 1.407811209 1 12.84161908 -2.064608334 0.163274188 0.793919455 5.059343632 0.630073633 0.236156885 13.31198263 0.18659414 0.356977736 12.92294977 0.008617706 2.064608334 4.265424177 DGWGGYGSDK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 DGWGGYGSDKR 11 1 Q15424-2;Q15424;Q15424-4;Q15424-3;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 1 ; DGWGGYGSDK(1)R;DGWGGYGSDK(1)R 112.13 0.0046656 2859700 1939.09 1729.4 1293.53 1400.1 1662.17 1513.42 1608.91 986.96 1874.45 1741.35 FALSE TRUE FALSE 1711.79281 1782.680764 1363.462145 1457.20213 1539.555031 1484.554035 1670.966198 1099.311537 1797.184378 1730.992373 0.988908349 1.029860554 0.787676576 0.841830474 0.889406016 0.85763176 0.965322681 0.635075899 1.038239339 1 10.75738365 -6.765875549 24.99841117 0.997248305 0.84022823 0.548032785 0.081266635 66.70529218 375893.5695 0.011706197 0.015681837 1.71E-07 6.765875549 -0.157020075 DGWQVEEADDWLR ddPTM_HeLa_CUDC101_4h_R1 2 DGWQVEEADDWLR 13 0 E9PK47;P06737-2;P06737 E9PK47 PYGL "Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, liver form" 0 0 ; ; 188.15 1.98E-10 50692000 3309.2 2451.94 2748.9 2066.25 2664.3 2434.8 2208.37 2002.27 2280.92 2357.1 FALSE FALSE TRUE 2921.300592 2527.481365 2897.513849 2150.520606 2467.759897 2388.360247 2293.547571 2230.200323 2186.899512 2343.079864 1.246778071 1.078700476 1.236626157 0.917817885 1.053212029 1.019325155 0.978860177 0.951824288 0.933343991 1 11.19419041 -6.250641729 24.99130371 1.124242857 0.989695334 0.241485332 0.096554624 711.7499716 1647353.886 0.015337604 0.025258184 5.62E-07 6.250641729 -0.134547523 KS(ph)PGADVTCSLPR ddPTM_HeLa_CUDC101_4h_R1 1 KSPGADVTCSLPR 13 1 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 0 KS(0.999)PGADVT(0.001)CSLPR 66.738 0.032139 11844000 324.05 353.39 175.13 305.35 521.09 478.22 388.19 401.11 444.93 632.93 TRUE FALSE FALSE 286.0653502 364.277527 184.5980575 317.8034928 482.6502289 469.0987503 403.1626183 446.7707411 426.5897971 629.1653042 0.454674389 0.578985403 0.293401522 0.505119228 0.767127853 0.745589032 0.640789655 0.710100729 0.678024987 1 9.297295304 -9.378618861 1.088060218 1.001361268 0.577600886 0.179042074 0.166970841 0.326822668 0.688608819 0.105665132 0.026849585 4.18E-10 9.378618861 -0.423760382 ASDSGPSSSSSSSSS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 3 ASDSGPSSSSSSSSSPPR 18 0 Q16643-3 Q16643-3 DBN1 Drebrin 1 0 ASDSGPSSSSSSSS(0.007)S(0.993)PPR;ASDSGPSSSSSSS(0.001)S(0.098)S(0.901)PPR;ASDSGPSSSSS(0.001)S(0.006)S(0.037)S(0.168)S(0.787)PPR ;; 195.5 1.22E-16 14776700 4736.53 4366.3 4344.5 4116.9 4427.9 4279.2 4289.96 3862.24 5415.5 5106.17 TRUE FALSE FALSE 4181.321134 4500.820528 4579.376811 4284.804977 4101.262639 4197.58139 4455.425194 4301.90179 5192.270798 5075.798274 0.823776066 0.886721711 0.902198347 0.844163764 0.808003474 0.826979553 0.877778224 0.847532064 1.022946642 1 12.30941902 -9.378555655 0.798437198 1.013649093 0.85034499 0.821517135 0.029485429 0.296540198 0.291322255 0.032255435 0.006026153 4.18E-10 9.378555655 -0.163304102 DGWSLWYSEYR ddPTM_HeLa_CUDC101_4h_R1 2 DGWSLWYSEYR 11 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 ; ; 180.09 3.31E-07 59022000 3150.4 2249.31 1722.98 1842.34 1451.41 2048.91 2057.8 2161.44 1912.63 2751.6 FALSE FALSE TRUE 2781.114888 2318.608575 1816.129511 1917.478588 1344.342376 2009.830455 2137.170035 2407.489593 1833.790582 2735.233361 1.016774264 0.847682179 0.663976075 0.701029249 0.491490925 0.734793047 0.781348336 0.880177036 0.670432954 1 11.41744821 -7.035404822 2.984483737 1.007903042 0.703437706 0.152840584 0.141411177 0.110091319 1.971785304 0.016251353 0.020802254 9.22E-08 7.035404822 -0.304465335 SIS(ph)CGPSSR ddPTM_HeLa_CUDC101_4h_R1 2 SISCGPSSR 9 0 Q5VU43-13;Q5VU43-2 Q5VU43-13 1 0 S(0.096)IS(0.896)CGPS(0.008)SR;S(0.009)IS(0.991)CGPSSR ; 128.51 0.0036476 58002000 5043.9 3302.4 3628.3 3767.4 3440.8 3296.2 3452.2 4368.2 3234 1360.26 TRUE FALSE FALSE 4452.661688 3404.14303 3824.456873 3921.050856 3186.979039 3233.330477 3585.35251 4865.458231 3100.693151 1352.169113 3.292976925 2.517542367 2.828386506 2.899822824 2.356938203 2.391217523 2.651556285 3.598261626 2.293125262 1 10.40105988 -9.378303604 1.003955575 0.956571197 2.813988878 0.34892626 0.534147491 0.218097192 0.378431905 0.299964379 0.070361752 4.19E-10 9.378303604 1.857417681 DGYNYTLSK ddPTM_HeLa_CUDC101_4h_R1 1 DGYNYTLSK 9 0 P31949 P31949 S100A11 "Protein S100-A11;Protein S100-A11, N-terminally processed" 0 0 120.09 0.031437 10762000 2238.4 1674.6 1413.5 1872.2 2254.7 1505.6 1630.4 1416.8 1343.5 1117.9 FALSE FALSE TRUE 1976.018145 1726.192441 1489.918086 1948.556408 2088.375273 1476.883189 1693.285074 1578.082785 1288.120361 1111.250681 1.778192967 1.553378073 1.34075786 1.753480508 1.879301681 1.329027926 1.523765162 1.420096124 1.159162719 1 10.11796859 -9.417486167 1.087931703 0.992440308 1.588185 0.534709274 0.18164997 0.293438607 0.608556085 0.135813318 0.032582419 3.82E-10 9.417486167 0.595744692 DHALLEEQSK ddPTM_HeLa_CUDC101_4h_R1 2 DHALLEEQSK 10 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 125.23 0.003291 15771000 18397 15329.2 15652.5 15518.9 13767.7 15320.7 14682 15605.7 16451.3 17193.1 FALSE FALSE TRUE 16240.53155 15801.47448 16498.7215 16151.82782 12752.0842 15028.48317 15248.28966 17382.18981 15773.17045 17090.83468 0.950248005 0.924558384 0.965354929 0.94505787 0.746135835 0.879329972 0.892191045 1.017047449 0.922902289 1 14.06093524 -5.982962362 24.99947823 0.96976469 0.879176723 0.182746804 0.065139717 228.7756873 335682.6591 0.009444573 0.0171171 1.04E-06 5.982962362 -0.090587967 S(ph)WITIPR ddPTM_HeLa_CUDC101_4h_R1 1 SWITIPR 7 0 H0Y8J2;Q03188;Q03188-2 H0Y8J2 CENPC Centromere protein C 1 0 S(1)WITIPR 107.69 0.014729 6890000 2298.2 2283.5 2300.9 2225.6 2272.2 2331.5 2251.1 1948.5 2416.9 3108 TRUE FALSE FALSE 2028.80848 2353.851928 2425.293614 2316.369588 2104.584333 2287.030522 2337.925681 2170.309364 2317.274359 3089.513478 0.656675718 0.761884337 0.785008265 0.74975222 0.681202509 0.740255881 0.7567294 0.702476095 0.750045072 1 11.59316395 -9.377774371 0.984786583 1.007927942 0.726836942 0.098409829 0.084396372 0.163857838 0.271293302 0.033835509 0.007790217 4.19E-10 9.377774371 -0.281091001 GS(ph)PLAEGPQAFFPER ddPTM_HeLa_CUDC101_4h_R1 2 GSPLAEGPQAFFPER 15 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 GS(1)PLAEGPQAFFPER;GS(1)PLAEGPQAFFPER ; 124.46 0.00082133 24117000 1740.28 1456.87 1479.34 1398.42 1717.49 1616.45 1474.87 1424.82 1811.57 1182.11 TRUE FALSE FALSE 1536.287016 1501.754438 1559.317595 1455.453612 1590.794184 1585.618909 1531.75623 1587.015749 1736.896318 1175.078757 1.307390681 1.278003222 1.32698986 1.238600905 1.353776651 1.349372457 1.303534951 1.350561177 1.478110558 1 10.19854174 -9.377632861 0.47937251 0.910566974 1.326786321 0 0.153928677 0.325279528 0.094009278 0.065977052 0.008729685 4.19E-10 9.377632861 0.416219347 DHEAWETR ddPTM_HeLa_CUDC101_4h_R1 1 DHEAWETR 8 0 J3KR97;Q9BTW9;Q9BTW9-4;Q9BTW9-5 J3KR97 TBCD Tubulin-specific chaperone D 0 0 109.71 0.00053224 0 1116.8 895.41 1271.9 1193.8 1375.9 1189.2 1398.9 1240.1 1505.2 1836.3 FALSE FALSE TRUE 985.890397 922.9965208 1340.662761 1242.488324 1274.402598 1166.517991 1452.856042 1381.267971 1443.155019 1825.377606 0.540102165 0.505646896 0.734457767 0.680674683 0.698158339 0.639055715 0.79592082 0.756702595 0.790606291 1 10.83397922 -9.422251194 1.160969116 0.999277177 0.658961928 0.369672025 0.105699469 0.246129106 0.595347785 0.066715946 0.016960402 3.78E-10 9.422251194 -0.340315249 DHEDYDPQTVR ddPTM_HeLa_CUDC101_4h_R1 2 DHEDYDPQTVR 11 0 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 0 0 ; ; 109.39 0.0066284 7780700 3773.7 2445.1 3297.8 3536 3176.2 2789.2 2790.7 2887.2 3416 3336.9 FALSE FALSE TRUE 3331.352607 2520.430633 3476.089043 3680.213364 2941.898054 2736.000657 2898.338234 3215.867178 3275.191034 3317.05197 1.004311249 0.759840562 1.047945306 1.109483179 0.886901405 0.824828999 0.873769317 0.969495566 0.987380078 1 11.6956859 -5.578020583 24.99990215 0.992671704 0.882481208 0.208657749 0.090608382 91.5192052 41492.08815 0.013046574 0.026093151 2.64E-06 5.578020583 -0.110190496 DHFALDRPSETHADYLLR ddPTM_HeLa_CUDC101_4h_R1 1 DHFALDRPSETHADYLLR 18 1 B1AKU2;P98170 B1AKU2 XIAP E3 ubiquitin-protein ligase XIAP 0 0 50.392 0.028283 3495100 392.62 402.04 299.62 260.49 512.85 365.19 493.11 234.65 341.21 398.74 FALSE FALSE TRUE 346.5976788 414.4263759 315.8183635 271.1139081 475.0180772 358.2246092 512.1294179 261.3616075 327.1451794 396.3682767 0.874433448 1.045558891 0.796780121 0.683994971 1.198426073 0.903767103 1.292054506 0.659390831 0.825356615 1 8.630697691 -5.737459292 24.99994135 0.920023704 1.025481051 0.086870032 0.188122847 502.6610149 524035.9448 0.02486095 0.049701646 1.83E-06 5.737459292 0.105457348 DHFEEAMR ddPTM_HeLa_CUDC101_4h_R1 3 DHFEEAMR 8 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ;; ;; 184.38 5.83E-09 127492000 16630.3 13358.5 11782 14104 13731.48 12446 12915.57 12031.49 10661.96 11433.5 FALSE FALSE TRUE 14680.92144 13770.05955 12418.97056 14679.22208 12718.53608 12208.61329 13413.72786 13401.10619 10222.4695 11365.49303 1.291710039 1.211567286 1.092690878 1.291560519 1.119048337 1.074182462 1.18021522 1.179104694 0.89943036 1 13.47237265 -9.551442563 1.335213812 1.000519525 1.190840537 0.553987332 0.078559251 0.313923754 1.007037778 0.053365123 0.01277413 2.81E-10 9.551442563 0.190321012 SDS(ph)PEIPFQAAAGPSDGLDASSPGNSFVGLR ddPTM_HeLa_CUDC101_4h_R1 2 SDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 31 0 Q12888;Q12888-3;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(0.115)DS(0.885)PEIPFQAAAGPSDGLDASSPGNSFVGLR;S(0.238)DS(0.762)PEIPFQAAAGPSDGLDASSPGNSFVGLR ; 134.41 5.41E-17 140348000 6114.1 5901.7 5517.5 4754 5863.4 5766.9 5722 5234.7 6608.6 6711.4 TRUE FALSE FALSE 5397.414466 6083.524382 5815.79274 4947.888669 5430.868664 5656.905991 5942.699457 5830.597089 6336.190711 6671.480294 0.809028016 0.911870247 0.871739477 0.741647798 0.814042525 0.84792366 0.890761749 0.873958527 0.94974285 1 12.70379119 -9.377595118 0.864426444 1.01042153 0.842195016 0.527336511 0.048253261 0.394118021 0.472516087 0.045952867 0.009287479 4.19E-10 9.377595118 -0.168226514 DVMS(ph)DETNNEETESPSQEFVNITK ddPTM_HeLa_CUDC101_4h_R1 2 DVMSDETNNEETESPSQEFVNITK 24 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DVMS(0.969)DET(0.031)NNEETESPSQEFVNITK;DVMS(0.508)DET(0.457)NNEET(0.027)ES(0.008)PSQEFVNITK ; 122.31 1.08E-08 9444800 2688.4 2543.5 2510.8 2179.69 2838 2623.3 2444.2 2339.1 3275.6 3119 TRUE FALSE FALSE 2373.269827 2621.86222 2646.541443 2268.58718 2628.646394 2573.264923 2538.473613 2605.373689 3140.578382 3100.448049 0.765460279 0.845639784 0.853599674 0.731696562 0.847827911 0.829965503 0.818744121 0.840321672 1.012943398 1 11.598261 -9.377088291 0.990547822 1.005072612 0.813653646 0.796605363 0.038131834 0.212612635 0.357187703 0.029959454 0.006945504 4.20E-10 9.377088291 -0.191418966 QLLDS(ph)DEEQEEDEGRNR ddPTM_HeLa_CUDC101_4h_R1 2 QLLDSDEEQEEDEGRNR 17 1 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 0 QLLDS(1)DEEQEEDEGRNR;QLLDS(1)DEEQEEDEGRNR ; 104.49 0.001052 32897000 2076.12 1964.94 1917.07 1677.44 1788.7 2115.47 1862.1 1707.21 2134.59 2300.6 TRUE FALSE FALSE 1832.760361 2025.477472 2020.712603 1745.853254 1656.751165 2075.120934 1933.921821 1901.551886 2046.601297 2286.915929 0.801411341 0.885680775 0.88359724 0.76340946 0.724447779 0.907388378 0.845646224 0.831491819 0.894917592 1 11.15918762 -9.377030437 0.752500449 1.01886549 0.827837356 0.305947206 0.062372434 0.511201282 0.433407049 0.06297524 0.011156589 4.20E-10 9.377030437 -0.191028134 LEDLDTCMMT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 LEDLDTCMMTPK 12 0 Q5VZK9;Q5VZK9-2 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 LEDLDT(0.027)CMMT(0.973)PK;LEDLDT(0.004)CMMT(0.996)PK;LEDLDT(0.018)CMMT(0.982)PK ;; 165.64 0.0001993 134310000 11148.7 8682.4 8923 8253.6 7457.8 9539.9 8767.7 7929.5 7867.2 5614.64 TRUE FALSE FALSE 9841.866286 8949.894453 9405.404371 8590.217483 6907.652952 9357.942302 9105.873126 8832.162228 7542.910686 5581.243872 1.763382234 1.603566276 1.685180685 1.539122404 1.237654743 1.676676834 1.631513214 1.582472014 1.351474843 1 12.44637097 -9.377026411 1.049224085 0.992780913 1.597468669 0.446281948 0.168311644 0.230672572 0.445695821 0.104975859 0.025786324 4.20E-10 9.377026411 0.604687755 DHGDWDEASR ddPTM_HeLa_CUDC101_4h_R1 1 DHGDWDEASR 10 0 A0A3B3IRL2;O75629 A0A3B3IRL2 CREG1 Protein CREG1 0 0 164.66 2.71E-05 3687800 1052.6 1012.3 893.43 1083.7 935.7 1063.6 838.77 712.86 1048 746.46 FALSE FALSE TRUE 929.2158236 1043.487763 941.7315283 1127.89797 866.6752752 1043.313602 871.1216399 794.0091009 1004.800996 742.0200227 1.252278638 1.406279792 1.26914571 1.520037109 1.167994459 1.40604508 1.173986703 1.070064252 1.354142699 1 9.535314307 -8.778739463 0.813499075 1.009926884 1.290172615 0 0.164898041 0.42877005 0.554407597 0.066060781 0.026095825 1.66E-09 8.778739463 0.280245731 DHMVTMHDVLDAQWLYDNHKDESYLR ddPTM_HeLa_CUDC101_4h_R1 1 DHMVTMHDVLDAQWLYDNHKDESYLR 26 1 O60832;O60832-2;H7C2Q2 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 0 0 49.497 0.013327 10900000 949.94 1055.9 1358.8 1370.4 1672.5 1968.8 1377.9 889.85 1648.3 1687.4 FALSE FALSE TRUE 838.5894732 1088.431027 1432.260838 1426.290835 1549.123007 1931.24842 1431.046065 991.1469271 1580.356376 1677.36327 0.499945056 0.648894039 0.853876357 0.850317198 0.923546518 1.15135967 0.853152141 0.590895809 0.942167034 1 10.71197945 -6.579629307 8.657824375 0.748606076 0.887073068 0.056690485 0.182714647 0.615666468 86.28215661 0.036077754 0.051074417 2.63E-07 6.579629307 0.138466993 FSSSTEQSS(ph)ASR ddPTM_HeLa_CUDC101_4h_R1 1 FSSSTEQSSASR 12 0 A0A3B3ITC6;I3L0M7;I3L2W9;I3L2N2;Q92997-2;Q92997;O14641 A0A3B3ITC6 DVL2;DVL3 Segment polarity protein dishevelled homolog DVL-3;Segment polarity protein dishevelled homolog DVL-2 1 0 FSSSTEQS(0.016)S(0.98)AS(0.003)R 89.747 0.0030965 0 2025.6 2067.7 1788 2060.9 2155.7 2085.7 1912.5 1371 2176.1 2609.2 TRUE FALSE FALSE 1788.162239 2131.403386 1884.664688 2144.95241 1996.678306 2045.918748 1986.265766 1527.069098 2086.400237 2593.680362 0.689430457 0.821767947 0.72663722 0.826991807 0.769824353 0.788809129 0.765809772 0.588765339 0.804416869 1 11.34078498 -9.37690994 0.93864164 1.010543695 0.749396227 0.222963005 0.088555059 0.291165834 0.428542492 0.054721539 0.01202003 4.20E-10 9.37690994 -0.261147469 DHNVEFR ddPTM_HeLa_CUDC101_4h_R1 2 DHNVEFR 7 0 E7ESL0;J3KQY1;Q9NWU5-2;Q9NWU5-3;Q9NWU5 E7ESL0 MRPL22 "39S ribosomal protein L22, mitochondrial" 0 0 ; ; 124.83 0.010527 13971400 3494.9 2393.9 3130.9 3090.1 3137.6 2819.6 3377.6 2173.71 2979.4 3241.8 FALSE FALSE TRUE 3085.23312 2467.653222 3300.165924 3216.127635 2906.145499 2765.820828 3507.875163 2421.15636 2856.587871 3222.517629 0.957398368 0.765753211 1.024095538 0.99801708 0.901824546 0.858279502 1.088551116 0.751324473 0.886446003 1 11.65397254 DHQPCIIFMDEIDAIGGR ddPTM_HeLa_CUDC101_4h_R1 2 DHQPCIIFMDEIDAIGGR 18 0 A0A087X2I1;P62333;H0YJX2 A0A087X2I1 PSMC6 26S protease regulatory subunit 10B 0 0 ; ; 98.882 0.0023357 5168500 4229.9 2984.3 3431.2 3363.3 4061.3 3713.9 3428 2658.7 3952.5 1870.71 FALSE FALSE TRUE 3734.077534 3076.242746 3616.701051 3500.469911 3761.70599 3643.063545 3560.219108 2961.355661 3789.576277 1859.582934 2.008018823 1.654264884 1.944899034 1.882395159 2.022876163 1.959075597 1.914525587 1.592483781 2.037863549 1 10.86076338 -9.320181581 0.773796431 0.925233328 1.890554117 0 0.34814109 0.221374164 0.207687757 0.137656272 0.027190721 4.78E-10 9.320181581 0.965320789 DHQYQFLEDAVR ddPTM_HeLa_CUDC101_4h_R1 2 DHQYQFLEDAVR 12 0 Q13263-2;Q13263;M0R2I3;M0R3C0 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 0 0 ; ; 154.1 0.00029567 37743000 7807.6 6229.7 5540.7 5904.9 6124.1 6388.1 5189.8 4043.3 6596.5 5285.1 FALSE FALSE TRUE 6892.404964 6421.629673 5840.247002 6145.727345 5672.337344 6266.257636 5389.972324 4503.572928 6324.589478 5253.66399 1.311923446 1.2223145 1.111652175 1.169798327 1.079691688 1.192740466 1.025945385 0.857225155 1.203843544 1 12.35910822 -4.418144318 2.485157036 1.152369247 0.836690853 0.575383036 0.081396761 0.311808319 2.942464835 0.016599422 0.177494285 3.82E-05 4.418144318 -0.315678394 DHRPPCAQEAPR ddPTM_HeLa_CUDC101_4h_R1 3 DHRPPCAQEAPR 12 1 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8;E3W990 Q13501 SQSTM1 Sequestosome-1 0 0 ;; ;; 89.356 0.012646 6918600 4198.2 3862.2 3405.2 3613.5 3524.21 3820.47 3739.61 3362.95 3542.9 3033.02 FALSE FALSE TRUE 3706.09336 3981.189804 3589.295412 3760.874149 3264.23605 3747.6009 3883.84801 3745.774634 3396.860162 3014.979462 1.229226735 1.320469958 1.190487516 1.247396275 1.082672731 1.24299384 1.288183903 1.24238811 1.126661128 1 11.55793246 -9.079491266 0.767323931 0.993072261 1.230315064 0.431815398 0.070784283 0.333767309 0.343731978 0.047296133 0.012746084 8.33E-10 9.079491266 0.237242803 YSPIYSPDPY(ph)YASESEYWTYHGSPK ddPTM_HeLa_CUDC101_4h_R1 1 YSPIYSPDPYYASESEYWTYHGSPK 25 0 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 YSPIYS(0.01)PDPY(0.254)Y(0.218)AS(0.219)ES(0.045)EY(0.218)WT(0.027)Y(0.007)HGS(0.002)PK 79.635 0.00075635 14557000 1554.5 1276.6 1344.8 1521.6 1840.4 1318.3 1546.9 1791 1606.5 2010.3 TRUE FALSE FALSE 1372.283866 1315.930533 1417.503956 1583.657425 1704.637359 1293.155624 1606.564451 1994.880201 1540.27939 1998.342646 0.686710995 0.658510959 0.709339791 0.792485427 0.853025562 0.64711406 0.803948439 0.998267341 0.770778421 1 10.96458826 -9.376879848 1.112658432 0.999378564 0.75825517 0 0.121281653 0.372241229 0.827698883 0.06894261 0.017953954 4.20E-10 9.376879848 -0.241123394 GGNFGFGDS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 GGNFGFGDSR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 GGNFGFGDS(1)R 98.182 0.018226 16984000 1608.5 1557.5 1530.8 1565.9 1780.5 1457.5 1389.7 1422.4 1648.2 2029 TRUE FALSE FALSE 1419.954068 1605.484729 1613.559678 1629.76417 1649.156062 1429.700616 1443.301195 1584.320266 1580.260498 2016.931418 0.704017031 0.796003629 0.800007211 0.808041442 0.817655994 0.708849395 0.715592599 0.785510232 0.783497388 1 10.97794631 -9.376603429 0.973796478 1.007519239 0.763578484 0.078663953 0.077307474 0.207393771 0.334231481 0.036977123 0.008432472 4.20E-10 9.376603429 -0.243940755 KNQKPSQVNGAPGS(ph)PTEPAGQK ddPTM_HeLa_CUDC101_4h_R1 1 KNQKPSQVNGAPGSPTEPAGQK 22 2 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 KNQKPSQVNGAPGS(0.741)PT(0.259)EPAGQK 127.16 3.16E-07 10616000 3636.5 2923.2 2892 3058 3621.8 3318.7 2933.7 2721.9 2771.5 2662.5 TRUE FALSE FALSE 3210.234983 3013.260327 3048.350268 3182.718458 3354.62703 3255.401327 3046.853792 3031.750094 2657.257597 2646.663332 1.21293666 1.138512893 1.151771074 1.202539975 1.267492918 1.230002051 1.151205654 1.14549896 1.004002876 1 11.36995897 -9.376554413 0.677446515 0.972123813 1.192282479 0.774088565 0.040020486 0.426124105 0.278385227 0.056964113 0.00921462 4.20E-10 9.376554413 0.220158666 EDKNGHDGDTHQEDDGEKS(ph)D ddPTM_HeLa_CUDC101_4h_R1 2 EDKNGHDGDTHQEDDGEKSD 20 2 K7EQH5;Q08117;Q08117-2 K7EQH5 AES Amino-terminal enhancer of split 1 0 EDKNGHDGDT(0.002)HQEDDGEKS(0.998)D;EDKNGHDGDT(0.004)HQEDDGEKS(0.996)D ; 67.827 0.0043564 16844300 10785.7 7870.1 13493.7 15867.4 13179.8 11968.5 12138.5 6284.49 16041.7 18744 TRUE FALSE FALSE 9521.416596 8112.568453 14223.21024 16514.54116 12207.55241 11740.2208 12606.68601 6999.890939 15380.45434 18632.50985 0.511010952 0.435398586 0.7633545 0.886329393 0.65517488 0.630093363 0.676596235 0.375681591 0.825463368 1 14.1855344 -9.375817938 1.084412963 1.001359499 0.61993659 0.363579834 0.150738021 0.360705273 0.754733458 0.104709397 0.026625934 4.21E-10 9.375817938 -0.381422909 GRS(ph)YDSSMESR ddPTM_HeLa_CUDC101_4h_R1 1 GRSYDSSMESR 11 1 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 GRS(0.998)YDS(0.002)SMESR 97.45 0.0091452 14177000 1138.8 846.37 1155.3 808.26 1006.5 1039.4 992.37 906.59 1176.4 861.04 TRUE FALSE FALSE 1005.31159 872.4456565 1217.759013 841.2243364 932.2525002 1019.575177 1030.646043 1009.792541 1127.908294 855.9184958 1.174541262 1.019309269 1.422751136 0.982832291 1.08918373 1.191205917 1.204140404 1.179776516 1.317775349 1 9.741329613 -9.375765769 0.641656033 0.973796337 1.160719795 0 0.150954738 1.366021248 0.781560262 0.150050092 0.02327608 4.21E-10 9.375765769 0.186923458 S(ph)AS(ph)PPPATSSSSSSR ddPTM_HeLa_CUDC101_4h_R1 1 SASPPPATSSSSSSR 15 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 S(1)AS(0.944)PPPAT(0.04)S(0.01)S(0.002)S(0.002)S(0.002)S(0.001)SR 118.52 0.009333 63853000 5061.8 5462.8 4522.8 6791.7 6260.4 5654.6 5296 4496.8 6980.3 9108 TRUE FALSE FALSE 4468.463477 5631.102393 4767.316249 7068.694882 5798.582764 5546.747926 5500.268494 5008.697535 6692.56908 9053.825211 0.493544261 0.621958372 0.526552715 0.780741258 0.640456672 0.612641375 0.607507696 0.553213412 0.739197955 1 13.14431174 -9.375640571 1.03112913 1.006472367 0.601489581 0.430685113 0.106743597 0.195353008 0.362117818 0.059121143 0.014300858 4.21E-10 9.375640571 -0.404982786 DHVFEDSYR ddPTM_HeLa_CUDC101_4h_R1 1 DHVFEDSYR 9 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 0 0 114.51 0.0073835 5647300 6189.3 3586.7 3046.5 3710.4 3873.7 4007.9 3637.9 3483.8 4147.8 4171.1 FALSE FALSE TRUE 5463.799636 3697.201976 3211.203005 3861.72615 3587.944868 3931.455985 3778.215022 3880.38171 3976.825928 4146.290112 1.317756232 0.891689167 0.774476199 0.931369018 0.865338597 0.948186422 0.911227849 0.935868356 0.95912872 1 12.01760535 -7.233186799 23.72830202 1.150051548 0.892502439 0.400429397 0.104212838 238.2932423 200133.7328 0.020604907 0.025232241 5.85E-08 7.233186799 -0.257549109 DHYEATAMHR ddPTM_HeLa_CUDC101_4h_R1 6 DHYEATAMHR 10 0 B1AJY5;B1AJY7;O75832;B1AJY6;O75832-2 B1AJY5 PSMD10 26S proteasome non-ATPase regulatory subunit 10 0 0 ;;;;; ;;;;; 156.83 6.93E-05 43493900 18861.4 15159.86 14715.7 16262.6 17460.09 16125.62 13518.76 13037.93 15025.89 16429.3 FALSE FALSE TRUE 16650.49528 15626.91732 15511.27525 16925.85912 16172.09395 15818.05067 14040.1831 14522.11525 14406.51645 16331.57779 1.01952766 0.956852884 0.949771997 1.036388482 0.990234633 0.968556184 0.859695449 0.88920467 0.882126432 1 13.99537656 -4.883413124 3.501518823 1.001356908 0.873688174 0.357476456 0.046040668 0.079264578 1.862117893 0.003950938 0.013772681 1.31E-05 4.883413124 -0.127668734 LQS(ph)EPESIR ddPTM_HeLa_CUDC101_4h_R1 1 LQSEPESIR 9 0 P09496-2;P09496-4;P09496-3;P09496;F8WF69 P09496-2 CLTA Clathrin light chain A 1 0 LQS(0.977)EPES(0.023)IR 93.839 0.023518 3670300 1095 826.46 993.57 1061.8 1029.9 1141 979.74 1254.5 899.46 1304.8 TRUE FALSE FALSE 966.6457599 851.922253 1047.2854 1105.104793 953.9263289 1119.237326 1017.5289 1397.307209 862.3838781 1297.038992 0.745271165 0.65682085 0.807443266 0.852021258 0.735464651 0.862917255 0.784501396 1.077305477 0.664886625 1 10.34100614 -9.375460702 1.13972576 0.998305873 0.80434285 0 0.147037065 0.449949869 1.059452271 0.06751262 0.018035837 4.21E-10 9.375460702 -0.193963023 DIAAHIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 DIAAHIKK 8 1 P63167;F8VXL2;F8VRV5 P63167 DYNLL1 "Dynein light chain 1, cytoplasmic" 0 1 DIAAHIK(1)K 68.735 0.019351 0 2470.4 1348.6 1159.7 1273.2 3747 2579.1 3046.1 2350.4 2793.4 966.04 FALSE TRUE FALSE 2180.823457 1390.148768 1222.39689 1325.126599 3470.591275 2529.907965 3163.589097 2617.960035 2678.25487 960.2939511 2.270995724 1.44762837 1.27294032 1.379917678 3.614092613 2.634514111 3.294396569 2.726206941 2.788994835 1 9.90733228 -1 0.11925072 0.688532827 8.685958728 0.184136542 0.784040496 62.1804846 0.510753256 3.067915583 82.88660992 0.1 1 7.997425901 DIAWTEDSKR ddPTM_HeLa_CUDC101_4h_R1 2 DIAWTEDSKR 10 1 D6RD66;O75083 D6RD66 WDR1 WD repeat-containing protein 1 0 0 ; ; 118.03 0.0056049 34620000 4091.6 3371.8 3800.4 3854.5 3761.5 3753.2 3383.7 3484.6 3776 4188.3 FALSE FALSE TRUE 3611.98885 3475.681161 4005.86112 4011.703171 3484.021639 3681.613963 3514.210442 3881.272779 3620.351682 4163.387805 0.86756003 0.834820421 0.962163821 0.963567018 0.836823712 0.884283217 0.844074731 0.932239071 0.86956869 1 12.02354223 -9.305607774 0.954084788 1.002227066 0.888947942 0 0.060673239 0.437898579 0.692477303 0.034941142 0.008648088 4.95E-10 9.305607774 -0.113279124 DIDDDLEGEVTEECGK ddPTM_HeLa_CUDC101_4h_R1 2 DIDDDLEGEVTEECGK 16 0 A0A0J9YYL3;A0A0J9YXJ8;A0A0J9YVP6;A0A0J9YXX5;Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5;Q9UHX1-2;Q9UHX1 A0A0J9YYL3 PUF60 Poly(U)-binding-splicing factor PUF60 0 0 ; ; 220.37 1.09E-31 135813600 10837.8 8469.2 7866.2 7887.7 8337.5 8672.5 8270.9 7581.4 9595 8559.4 FALSE FALSE TRUE 9567.409513 8730.126014 8291.470566 8209.3945 7722.459236 8507.086512 8589.911384 8444.435931 9199.490039 8508.488308 1.124454682 1.026049011 0.974493972 0.964847597 0.907618246 0.999835247 1.009569629 0.992471944 1.08121322 1 13.05468712 -6.896994187 4.084609266 1.059455446 0.974135993 0.537053401 0.038898001 0.184047187 5.701393937 0.008711038 0.011581157 1.27E-07 6.896994187 -0.085319453 ENQSEGKGSDSDS(ph)EGDNPEK ddPTM_HeLa_CUDC101_4h_R1 1 ENQSEGKGSDSDSEGDNPEK 20 1 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 1 0 ENQSEGKGS(0.01)DS(0.09)DS(0.9)EGDNPEK 69.975 0.0049696 4231500 1055.5 1132.6 1129.2 1154.8 1392.9 944.3 846.08 1261.5 1294.3 1793.7 TRUE FALSE FALSE 931.77589 1167.494064 1190.247968 1201.897735 1290.148542 926.2890508 878.713589 1405.104061 1240.948406 1783.030993 0.52257975 0.654780578 0.66754194 0.674075628 0.723570452 0.519502496 0.492820143 0.788042421 0.695976913 1 10.80011606 -9.375432559 0.996611457 1.009558258 0.620837619 0.184951741 0.128393485 0.25007195 0.426746538 0.071684017 0.016761897 4.21E-10 9.375432559 -0.388720639 DIDEVSSLLR ddPTM_HeLa_CUDC101_4h_R1 2 DIDEVSSLLR 10 0 P50990-3;P50990-2;P50990;H7C4C8 P50990-3 CCT8 T-complex protein 1 subunit theta 0 0 ; ; 147.4 0.0036645 37023000 5938.2 4839 4009.6 4441.7 5153.5 4292.1 4536.4 3989.6 5137.9 4757.1 FALSE FALSE TRUE 5242.133198 4988.083854 4226.371104 4622.851725 4773.336572 4210.235344 4711.370468 4443.759937 4926.113587 4728.804558 1.108553575 1.054829776 0.893750429 0.977594161 1.009417182 0.890338201 0.996313214 0.939721632 1.041724928 1 12.2072598 -6.785538027 24.70928211 1.052961366 0.954321242 0.55345379 0.043978941 135.0441444 138465.5214 0.008447545 0.01110554 1.64E-07 6.785538027 -0.098640124 DIDFLKEEEHDCFLEEIMTK ddPTM_HeLa_CUDC101_4h_R1 2 DIDFLKEEEHDCFLEEIMTK 20 1 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 0 0 ; ; 77.037 0.0030019 63182000 7961.2 7122.4 7057.4 7055.5 7715.4 8019.7 6825.7 6634.7 7149.6 4443.8 FALSE FALSE TRUE 7028.000204 7341.832702 7438.944391 7343.253786 7146.250313 7866.737584 7088.969535 7389.96743 6854.890462 4417.36808 1.590992663 1.662037795 1.684021856 1.662359499 1.617762021 1.780865312 1.604794848 1.672934493 1.551804228 1 12.10897134 -9.005445504 0.538269246 0.915872498 1.684924768 0.25401678 0.175439806 0.145861591 0.068046237 0.056090652 0.012428004 9.88E-10 9.005445504 0.76905227 LIESLS(ph)PDFCHQNK ddPTM_HeLa_CUDC101_4h_R1 2 LIESLSPDFCHQNK 14 0 Q9H6R7-2;Q9H6R7 Q9H6R7-2 C2orf44 WD repeat and coiled-coil-containing protein C2orf44 1 0 LIES(0.139)LS(0.861)PDFCHQNK;LIES(0.288)LS(0.712)PDFCHQNK ; 125.41 0.00072864 36063000 12476.2 10100.7 10012.8 9789.6 11784.7 10812.6 9221.4 7702.5 11936.1 7854.2 TRUE FALSE FALSE 11013.75875 10411.89059 10554.12226 10188.8622 10915.36616 10606.36767 9577.072487 8579.321465 11444.08891 7807.482869 1.41066704 1.333578411 1.351795762 1.305012431 1.398064695 1.358487473 1.226653026 1.098858827 1.465784696 1 12.93064178 -9.375363889 1.057363473 0.996890726 1.32108126 0 0.166920134 0.271898023 0.535579995 0.066475931 0.016495553 4.21E-10 9.375363889 0.324190533 DIDIHEVR ddPTM_HeLa_CUDC101_4h_R1 4 DIDIHEVR 8 0 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;A0A1X7SBS1;Q5RI18;A0A1W2PQL0;A0A1W2PP34;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ;;; ;;; 117.81 0.0074032 253825000 38976.3 39690.2 41571.5 37785.4 45052.4 41027.6 41643 38114 44078.8 38208.5 FALSE FALSE TRUE 34407.5572 40913.00802 43818.98104 39326.45193 41728.97421 40245.06689 43249.18446 42452.7437 42261.85321 37981.23414 0.905909404 1.077190063 1.153700822 1.035417959 1.098673467 1.059603981 1.138698766 1.117729443 1.112703527 1 15.21299916 -7.162765916 5.835891595 0.955746852 1.098542941 0.201982941 0.063060031 0.098503791 4.831705621 0.007688995 0.009440424 6.87E-08 7.162765916 0.142796089 DIDILNSAGK(ac)MDK ddPTM_HeLa_CUDC101_4h_R1 3 DIDILNSAGKMDK 13 1 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 1 ;; DIDILNSAGK(1)MDK;DIDILNSAGK(1)MDK;DIDILNSAGK(1)MDK 152 0.00060234 2426150 966.29 839.026 669.04 515.4 926.75 622.801 1172.87 663.93 895.03 1101.89 FALSE TRUE FALSE 853.022951 864.8753966 705.2103261 536.4202397 858.3854988 610.9221086 1218.107989 739.5091075 858.1364846 1095.335909 0.778777491 0.789598323 0.64383019 0.489731264 0.783673293 0.557748635 1.112086236 0.675143672 0.783445952 1 10.09715766 -8.627010654 0.693799439 0.994182161 0.7231743 0.087323777 0.170503765 0.655145803 0.630606443 0.089855404 0.036257626 2.36E-09 8.627010654 -0.27100786 ALENDFFNS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 4 ALENDFFNSPPR 12 0 F5H148;Q9NYV6;H3BMT1;Q9NYV6-2;Q9NYV6-3;A6NIE6 F5H148 RRN3;RRN3P2 RNA polymerase I-specific transcription initiation factor RRN3;Putative RRN3-like protein RRN3P2 1 0 ALENDFFNS(1)PPR;ALENDFFNS(1)PPR;ALENDFFNS(1)PPR;ALENDFFNS(1)PPR ;;; 141.37 0.0012058 44877500 9551.3 8643.3 8105.7 8342.7 9254.67 8531.13 8761.77 7206.99 9391.2 9505.9 TRUE FALSE FALSE 8431.711093 8909.589828 8543.91866 8682.951366 8571.971432 8368.412909 9099.714404 8027.40461 9004.090761 9449.358484 0.892305134 0.942877746 0.904179757 0.918893212 0.907148506 0.885606459 0.962998115 0.849518475 0.952878524 1 13.20600067 -9.375342493 0.803790338 1.00803998 0.908648171 0.384037346 0.032511927 0.410656188 0.410972572 0.027255001 0.005149197 4.21E-10 9.375342493 -0.099391808 RGDS(ph)ESEEDEQDSEEVR ddPTM_HeLa_CUDC101_4h_R1 1 RGDSESEEDEQDSEEVR 17 1 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 0 RGDS(0.844)ES(0.156)EEDEQDSEEVR 92.034 0.003191 2570400 406.58 307.73 370.18 392.73 489.48 585.37 285.43 384.8 496.57 545.09 TRUE FALSE FALSE 358.9213087 317.2107966 390.1930505 408.7472269 453.3720356 574.2050425 296.4391307 428.6040766 476.1011744 541.8477804 0.662402471 0.585424187 0.72011562 0.754358035 0.83671476 1.059716517 0.547089314 0.791004581 0.878662221 1 9.081743807 -9.375262469 1.125513906 0.998512499 0.739915394 0.222795969 0.139326995 0.461152409 1.054262477 0.091872379 0.024252026 4.21E-10 9.375262469 -0.258597104 MLWGSDPYPHAEPQQATT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 MLWGSDPYPHAEPQQATTPK 20 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 MLWGSDPYPHAEPQQAT(0.276)T(0.724)PK;MLWGSDPYPHAEPQQAT(0.256)T(0.744)PK;MLWGSDPYPHAEPQQAT(0.109)T(0.891)PK ;; 99.414 0.0011762 47280000 7127.8 6190.9 5889.1 5718.6 8162.7 7125.3 6360.2 4867.2 6862.4 7045.5 TRUE FALSE FALSE 6292.290089 6381.634291 6207.48256 5951.829226 7560.553883 6989.396774 6605.515045 5421.262374 6579.528967 7003.593053 0.898437422 0.911194332 0.886328276 0.849825109 1.079525013 0.997973001 0.943160888 0.774068729 0.939450496 1 12.77387954 -9.375257635 1.092384344 1.000115969 0.921228488 0.042772951 0.079544189 0.901255704 1.919422479 0.05423268 0.013901997 4.21E-10 9.375257635 -0.078887481 DIDVLNSSGK(ac)MDK ddPTM_HeLa_CUDC101_4h_R1 2 DIDVLNSSGKMDK 13 1 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 A0A0A0MRP6 SMARCA1 Probable global transcription activator SNF2L1 0 1 ; DIDVLNSSGK(1)MDK;DIDVLNSSGK(1)MDK 161.25 5.53E-05 1156960 791.26 423.76 457.919 568.82 630.71 567.96 677.35 601.249 848.5 615.21 FALSE TRUE FALSE 698.5097023 436.8155433 482.6754863 592.0189382 584.1837799 557.1271093 703.4756164 669.6927558 813.5244709 611.5507036 1.142194258 0.714275269 0.78926487 0.968061904 0.955249951 0.911007225 1.150314458 1.095073151 1.330264958 1 9.256328307 -4.742290053 24.92618426 0.999998678 1.122693868 0.100124164 0.163648929 451.8614166 588166.4985 0.020956995 0.078158123 1.81E-05 4.742290053 0.122695191 SEGS(ph)PVLPHEPAK ddPTM_HeLa_CUDC101_4h_R1 1 SEGSPVLPHEPAK 13 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 S(0.099)EGS(0.901)PVLPHEPAK 109.44 0.0047964 17425000 2585.4 2362.8 2496.7 2307.6 2356.5 2066.2 2386.2 2341.8 2790.1 2894.1 TRUE FALSE FALSE 2282.343331 2435.595067 2631.679154 2401.713902 2182.66569 2026.790678 2478.236533 2608.381046 2675.090897 2876.885764 0.793338185 0.846608196 0.91476665 0.834831168 0.758690427 0.704508571 0.861430288 0.906668272 0.929856489 1 11.49029222 -9.374876112 0.781825712 1.017180948 0.822769803 0.405113752 0.064120975 0.544139301 0.508219202 0.069606793 0.012818083 4.22E-10 9.374876112 -0.194411144 T(ph)PADRGPSPAPAPAASPQPGSR ddPTM_HeLa_CUDC101_4h_R1 1 TPADRGPSPAPAPAASPQPGSR 22 1 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 1 0 T(0.735)PADRGPS(0.186)PAPAPAAS(0.073)PQPGS(0.006)R 57.648 0.020372 13485000 1081.6 873.1 867.64 999.83 933.14 661.57 1113 762.91 864.81 793.75 TRUE FALSE FALSE 954.8164876 899.9991761 914.5472429 1040.607389 864.3041213 648.9516545 1155.928783 849.7565906 829.1621658 789.0287397 1.210116235 1.140641818 1.159079761 1.31884599 1.095402585 0.82246897 1.465002128 1.076965322 1.05086434 1 9.62393404 -9.374864189 1.021556449 0.996950537 1.165755098 0.102751164 0.157610738 0.891379858 1.61589634 0.112007915 0.02687206 4.22E-10 9.374864189 0.168804561 FRNS(ph)VEGLNQEIEIIIK ddPTM_HeLa_CUDC101_4h_R1 2 FRNSVEGLNQEIEIIIK 17 1 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B 1 0 FRNS(1)VEGLNQEIEIIIK;FRNS(1)VEGLNQEIEIIIK ; 115.02 0.00034835 16068900 3885 3682.3 3888.1 3273.8 4215.6 4328.7 3513.7 3140.9 4257 4989.1 TRUE FALSE FALSE 3429.606189 3795.747298 4098.302447 3407.319715 3904.623587 4246.13726 3649.224586 3498.44736 4081.524658 4959.424611 0.691533083 0.765360419 0.826366518 0.68703932 0.78731383 0.856175382 0.735816122 0.705413961 0.822983507 1 12.27595703 -9.374740713 1.008204427 1.005361562 0.755685675 0.315240173 0.074861682 0.230723046 0.405111429 0.042661823 0.010102608 4.22E-10 9.374740713 -0.249675887 DIEREDIEFICK ddPTM_HeLa_CUDC101_4h_R1 4 DIEREDIEFICK 12 1 P50991-2;P50991 P50991-2 CCT4 T-complex protein 1 subunit delta 0 0 ;;; ;;; 173.72 7.85E-07 127239000 15896.3 14959.3 15285.7 14414.4 16584 15523.3 14128.3 14178.1 16101.5 5051.81 FALSE FALSE TRUE 14032.95981 15420.1783 16112.09118 15002.28154 15360.63136 15227.21892 14673.23326 15792.07759 15437.78935 5021.761609 2.794429705 3.070671111 3.208454011 2.987453946 3.058813332 3.032246471 2.921929475 3.144728648 3.074178059 1 12.29397783 -8.94481913 0.567894978 0.808126223 3.092176409 0 0.643345587 0.107302569 0.058393111 0.124678004 0.030709514 1.14E-09 8.94481913 2.284050186 GDS(ph)VSDSGSDALR ddPTM_HeLa_CUDC101_4h_R1 2 GDSVSDSGSDALR 13 0 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 GDS(0.66)VS(0.321)DS(0.017)GS(0.001)DALR;GDS(0.878)VS(0.122)DSGSDALR ; 160.46 2.04E-08 0 2236.8 1977.25 1969.12 1772.1 2286.5 1790.65 2089.8 1968.94 2039.01 2178.7 TRUE FALSE FALSE 1974.605695 2038.166729 2075.576583 1844.373898 2117.82945 1756.496335 2170.404286 2193.076171 1954.961145 2165.740996 0.911746002 0.941094403 0.958367869 0.851613328 0.977877528 0.811037118 1.002153208 1.012621627 0.902675412 1 11.080645 -9.37429892 0.99807704 1.001710204 0.929927449 0 0.066939122 0.832949335 1.427245372 0.044096565 0.010343656 4.22E-10 9.37429892 -0.071782755 LSSAGPRS(ph)PYCK ddPTM_HeLa_CUDC101_4h_R1 1 LSSAGPRSPYCK 12 1 Q6PL18;Q6PL18-2 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 0 LSSAGPRS(1)PYCK 122.1 0.015101 23575000 2727.4 2096.6 2381.7 2432.3 2309.8 1776.9 1763.5 1366.5 1844.6 1189.2 TRUE FALSE FALSE 2407.698306 2161.193761 2510.461906 2531.499707 2139.410656 1743.008593 1831.518786 1522.056836 1768.564807 1182.126586 2.036751678 1.828225325 2.123682808 2.14147938 1.809798275 1.474468652 1.549342353 1.287558249 1.496087499 1 10.20716882 -9.374108716 1.078439699 0.996480577 1.807086811 0.279719413 0.304251563 0.337592328 0.697564456 0.207706857 0.052658085 4.23E-10 9.374108716 0.810606234 DIFPYSENK(ac)EK ddPTM_HeLa_CUDC101_4h_R1 1 DIFPYSENKEK 11 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 0 1 DIFPYSENK(1)EK 120.06 0.0021119 787940 953.56 275.98 445.82 674.1 925.32 769 1030.8 912.24 729.79 532.83 FALSE TRUE FALSE 841.7851423 284.4826167 469.9223777 701.5927117 857.0609871 754.3326062 1070.558301 1016.085714 699.7077473 529.6607035 1.589291289 0.537103498 0.887213974 1.324607824 1.618132101 1.424180804 2.021215269 1.918370964 1.321049009 1 9.048924666 -5.090429731 1.151111711 1.197156125 2.01670818 0.532465495 0.298453431 0.469914637 1.022440951 0.054508829 0.321899335 8.12E-06 5.090429731 0.819552055 DIGPEVVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DIGPEVVKK 9 1 A0A2R8YD50;P51659-3;P51659;P51659-2;E7EPL9;A0A2R8Y7L2;E7ET17 A0A2R8YD50 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 1 ; DIGPEVVK(1)K;DIGPEVVK(1)K 98.033 0.0053095 655870 761.62 810.69 728.82 839.24 864.65 778.02 776.71 536.64 833.38 649.05 FALSE TRUE FALSE 672.3440581 835.666398 768.2222138 873.4678347 800.8664921 763.1805648 806.6679649 597.7289284 799.0277237 645.1894217 1.042087851 1.29522644 1.190692513 1.353816112 1.241288938 1.182878298 1.250280829 0.926439443 1.238438971 1 9.333578975 -7.366954707 5.878845446 1.018533043 1.212799217 0.056198025 0.126970161 0.158886223 7.495577822 0.017466303 0.019892804 4.30E-08 7.366954707 0.194266173 AHT(ph)PTPGIYMGR ddPTM_HeLa_CUDC101_4h_R1 3 AHTPTPGIYMGR 12 0 Q13595;Q13595-4;Q13595-3;Q13595-2 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 AHT(1)PTPGIYMGR;AHT(0.996)PT(0.004)PGIYMGR;AHT(0.994)PT(0.006)PGIYMGR ;; 104.94 0.02543 476580000 3622.5 3412.34 3667.51 3546.66 3019.66 4040.47 2829.33 2896.92 3773.27 4563.2 TRUE FALSE FALSE 3197.876041 3517.470151 3865.786684 3691.308125 2796.905698 3963.404767 2938.458206 3226.693663 3617.734214 4536.057883 0.704990131 0.775446487 0.852234866 0.813770066 0.616593917 0.873755333 0.64779998 0.711343141 0.797550275 1 12.14722333 -9.373283837 0.790404154 1.023503228 0.747610302 0.147517933 0.100462245 0.446093174 0.428559758 0.081413489 0.015183577 4.23E-10 9.373283837 -0.275892926 DIIFAIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DIIFAIKK 8 1 P11177-3;P11177-2;P11177 P11177-3 PDHB "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial" 0 1 ; DIIFAIK(1)K;DIIFAIK(1)K 117.02 0.0021473 565330 1256.17 528.13 309.89 777.73 547.84 673.94 430.59 368.68 493.86 145.79 FALSE TRUE FALSE 1108.923657 544.4010593 326.6435908 809.449191 507.4269347 661.0857174 447.1980005 410.6490409 473.5028818 144.9228346 7.651821467 3.756489175 2.253913896 5.585380615 3.501359438 4.561639435 3.08576631 2.833570307 3.267275879 1 7.179141119 -4.665225442 6.115721012 4.120584448 2.906852036 0.043608118 1.711509808 0.655864983 34.25198847 0.34243422 1.316286343 2.16E-05 4.665225442 -1.213732412 DIIHDPGR ddPTM_HeLa_CUDC101_4h_R1 4 DIIHDPGR 8 0 E9PKZ0;E9PKU4;P62917;G3V1A1 E9PKZ0 RPL8 60S ribosomal protein L8 0 0 ;;; ;;; 101.25 0.016362 228537000 43573.7 40611.3 41928.4 40669.4 42501.9 42667.9 39071.2 45689.3 40453.3 39838.6 FALSE FALSE TRUE 38466.05694 41862.48602 44195.17613 42328.07392 39366.61951 41854.0809 40578.18927 50890.38523 38785.79785 39601.63824 0.971324891 1.057089754 1.115993633 1.068846538 0.994065429 1.056877512 1.02465936 1.285057576 0.979398822 1 15.27327249 DIINMLFYHDR ddPTM_HeLa_CUDC101_4h_R1 1 DIINMLFYHDR 11 0 E9PK47;P06737-2;P06737 E9PK47 PYGL "Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, liver form" 0 0 98.531 0.00083789 0 3073.1 2847.4 2023 2258.4 2560.4 2310.4 2500.7 1984.5 2116.2 2019.1 FALSE FALSE TRUE 2712.875877 2935.125019 2132.369499 2350.507314 2371.524393 2266.332969 2597.152837 2210.407458 2028.96934 2007.090303 1.351646148 1.462378157 1.062418316 1.171101923 1.18157334 1.129163429 1.293989031 1.101299456 1.010900873 1 10.97088981 -9.527769477 1.32594807 1.001718103 1.234576775 0.344858924 0.116100477 0.403050668 1.283553091 0.082519023 0.020376519 2.97E-10 9.527769477 0.232858672 RRS(ph)QS(ph)IEQESQEK ddPTM_HeLa_CUDC101_4h_R1 1 RRSQSIEQESQEK 13 2 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 2 0 RRS(1)QS(1)IEQESQEK 157.37 0.00022952 10228000 4317 3668.6 4243.2 3819.3 4128.4 3415.9 3923.8 3954.4 4249.6 4467.3 TRUE FALSE FALSE 3810.967804 3781.625218 4472.600227 3975.067562 3823.856157 3350.747399 4075.14228 4404.552912 4074.429689 4440.728301 0.858185312 0.851577706 1.007177184 0.895138656 0.861087618 0.754549068 0.91767431 0.991853726 0.917513843 1 12.11658059 -9.373179194 1.014444949 1.002253081 0.887683135 0.074163954 0.072664096 0.622460206 1.110211994 0.052905775 0.012635288 4.23E-10 9.373179194 -0.114569946 ASS(ph)LDDLR ddPTM_HeLa_CUDC101_4h_R1 2 ASSLDDLR 8 0 Q96P11-4;Q96P11-5;Q96P11;Q96P11-2;Q96P11-3 Q96P11-4 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase 1 0 AS(0.125)S(0.875)LDDLR;AS(0.045)S(0.955)LDDLR ; 111.06 0.011113 6532000 9883.3 9196.8 7841.9 8144.2 9916.6 9750.1 7866.7 8579.7 9433.3 9708.3 TRUE FALSE FALSE 8724.794556 9480.142507 8265.856834 8476.355678 9185.072175 9564.133087 8170.121254 9556.378368 9044.455381 9650.5546 0.90407183 0.982341731 0.85651625 0.878328348 0.951766251 0.991044918 0.846596034 0.990241366 0.9371954 1 13.23639614 -9.372916485 0.917812529 1.003658435 0.922052812 0.042015431 0.054560296 0.717216177 1.000530615 0.041643201 0.008996921 4.24E-10 9.372916485 -0.081605623 DIISDTSGDFRK ddPTM_HeLa_CUDC101_4h_R1 2 DIISDTSGDFRK 12 1 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5;H0YKS4;H0YNA0;H0YN52 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 120.03 0.0035269 54935000 11012.3 9433.7 7974.4 8842.7 9269.6 8728 8117.2 8601.8 9582.5 9915 FALSE FALSE TRUE 9721.454888 9724.341115 8405.520185 9203.343527 8585.800076 8561.527942 8430.283123 9580.994142 9187.505294 9856.025139 0.986346397 0.986639236 0.852830636 0.933778414 0.871121974 0.868659304 0.855343103 0.972095141 0.932171455 1 13.26679022 -6.793657258 12.45392664 0.992869854 0.890478686 0.499263622 0.039818584 0.396303825 152.5826513 0.005198879 0.006846032 1.61E-07 6.793657258 -0.102391169 DIISIAEDEDLR ddPTM_HeLa_CUDC101_4h_R1 4 DIISIAEDEDLR 12 0 P12956;P12956-2;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 0 ;;; ;;; 284.62 5.02E-102 185858000 13349.5 10301.7 11697.6 10315.7 11253.6 10036.9 10585.6 8853.3 11572.6 12100.1 FALSE FALSE TRUE 11784.69185 10619.08317 12330.00764 10736.41883 10423.44435 9845.462855 10993.89014 9861.123886 11095.57253 12028.12807 0.979761088 0.882854182 1.025097802 0.892609288 0.866589073 0.818536584 0.914015055 0.819838618 0.922468772 1 13.55412451 -6.188828773 0.611356124 0.994184032 0.838813204 0.437539073 0.050731057 0.398736489 0.282448445 0.009900179 0.028527907 6.47E-07 6.188828773 -0.155370829 NPVSLPSLPNPTKPNNVPSVPS(ph)PSIQR ddPTM_HeLa_CUDC101_4h_R1 1 NPVSLPSLPNPTKPNNVPSVPSPSIQR 27 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 NPVSLPSLPNPTKPNNVPS(0.227)VPS(0.597)PS(0.176)IQR 73.107 9.53E-05 13854000 466.32 450.55 419.96 368.96 500.48 404.43 630.59 581.48 738.02 706.47 TRUE FALSE FALSE 411.6586765 464.4309115 442.6643079 384.0077836 463.5605875 396.7161716 654.9120675 647.6733328 707.5985032 702.267885 0.586184681 0.66133013 0.6303354 0.54681097 0.660090825 0.564907181 0.932567303 0.922259648 1.007590577 1 9.455877651 -9.372675338 1.067081249 1.002162526 0.67669844 0.4837476 0.12942878 0.397633153 0.801502176 0.097798491 0.024585718 4.24E-10 9.372675338 -0.325464086 DIKEMSEEMDK ddPTM_HeLa_CUDC101_4h_R1 1 DIKEMSEEMDK 11 1 Q8NF91;Q8NF91-8;Q8NF91-4;Q8NF91-2;E7ENN3;A0A0C4DG40 Q8NF91 SYNE1 Nesprin-1 0 0 80.231 0.017998 333400 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 SSSERS(ph)TPPYLFPEYPEASK ddPTM_HeLa_CUDC101_4h_R1 2 SSSERSTPPYLFPEYPEASK 20 1 Q8TE76-2;Q8TE76-3;Q8TE76 Q8TE76-2 MORC4 MORC family CW-type zinc finger protein 4 1 0 S(0.03)S(0.03)S(0.03)ERS(0.454)T(0.454)PPY(0.004)LFPEYPEASK;S(0.251)S(0.086)S(0.086)ERS(0.351)T(0.222)PPY(0.005)LFPEYPEASK ; 63.447 0.010616 13741000 3603.5 3325.7 2872.7 3113.2 4059.9 3224.5 3035.3 3373.4 3717.7 3855.1 TRUE FALSE FALSE 3181.103193 3428.160875 3028.006851 3240.169752 3760.409265 3162.998035 3152.372538 3757.41422 3564.454832 3832.169694 0.830104992 0.894574392 0.790154689 0.845518339 0.981274204 0.825380473 0.822607763 0.980492651 0.930140134 1 11.90394573 -9.371821469 1.034800562 1.001910192 0.866185818 0.222326572 0.065105107 0.432126219 0.809215864 0.043812943 0.010695271 4.25E-10 9.371821469 -0.135724374 DIKSDNVLLGMEGSVK ddPTM_HeLa_CUDC101_4h_R1 1 DIKSDNVLLGMEGSVK 16 1 Q13177;H7C1X3 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 0 0 54.501 0.026555 2507900 2263.4 2262.5 1859.2 2384.8 2712.9 2262.2 2263 2435.2 1755.6 2636.1 FALSE FALSE TRUE 1998.087683 2332.204943 1959.713976 2482.062452 2512.774772 2219.052304 2350.284668 2712.413325 1683.233425 2620.42036 0.762506548 0.890011763 0.747862444 0.94720011 0.958920489 0.84683066 0.896911314 1.035106186 0.642352445 1 11.35558255 DILLRPELEELR ddPTM_HeLa_CUDC101_4h_R1 2 DILLRPELEELR 12 1 P00387-2;P00387;P00387-3 P00387-2 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form 0 0 ; ; 119.27 0.0043572 6209400 4938.6 3789.6 3289.2 3579.5 3718.3 3482.7 2941.9 3342.2 3497.9 3688.8 FALSE FALSE TRUE 4359.704794 3906.353084 3467.024101 3725.487482 3444.008417 3416.2733 3055.370068 3722.662538 3353.715081 3666.858854 1.18894808 1.065313185 0.945502469 1.015988788 0.939225794 0.931662067 0.833239072 1.015218389 0.914601629 1 11.84032902 -6.79935643 4.407679942 1.090922703 0.943025191 0.151402128 0.084745342 0.153282662 6.568731569 0.013535443 0.018335047 1.59E-07 6.79935643 -0.147897512 GNKS(ph)PSPPDGS(ph)PAATPEIR ddPTM_HeLa_CUDC101_4h_R1 3 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-11;O00499-2;O00499;O00499-9;O00499-10;O00499-7;O00499-8;O00499-4;O00499-3;O00499-5 O00499-6 BIN1 Myc box-dependent-interacting protein 1 2 0 GNKS(0.904)PS(0.105)PPDGS(0.987)PAAT(0.004)PEIR;GNKS(0.986)PS(0.016)PPDGS(0.959)PAAT(0.039)PEIR;GNKS(0.999)PS(0.002)PPDGS(0.998)PAAT(0.002)PEIR ;; 125.99 5.30E-05 187636000 15154.9 13936.8 12889.9 13009.3 14872.7 14427.3 13294.4 12242.8 15272.7 15515.4 TRUE FALSE FALSE 13378.4656 14366.17629 13586.76698 13539.87548 13775.57055 14152.12329 13807.16946 13636.47086 14643.15284 15423.11371 0.867429615 0.931470555 0.880935409 0.87789507 0.893177008 0.91759184 0.89522581 0.884158097 0.949429092 1 13.91280643 -9.371648655 0.932708872 1.004551353 0.892552095 0.638379208 0.023312934 0.196444817 0.285357854 0.015758251 0.00346651 4.25E-10 9.371648655 -0.111999257 DIMEDTIEDKLDTK ddPTM_HeLa_CUDC101_4h_R1 1 DIMEDTIEDKLDTK 14 1 A0A1B0GWF2;A0A1B0GVQ5;A0A2R8Y5D4;A0A0D9SG72;A0A1B0GTP9;P61764;P61764-2 A0A1B0GWF2 STXBP1 Syntaxin-binding protein 1 0 0 91.307 0.016684 2074100 750.08 1037.6 1050.4 809.09 1224.7 986.1 888.08 1009.4 827.37 1167 FALSE FALSE TRUE 662.1567594 1069.567226 1107.187801 842.0881874 1134.356321 967.2917855 922.3335431 1124.306016 793.2654584 1160.058632 0.570795942 0.92199411 0.954424001 0.725901402 0.977843955 0.833830083 0.795074936 0.969180337 0.68381497 1 10.17998201 DINAYNCEEPTEKLPFPIIDDR ddPTM_HeLa_CUDC101_4h_R1 1 DINAYNCEEPTEKLPFPIIDDR 22 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 147.28 5.56E-07 10332000 1177.1 876.9 1220.9 1052.9 1516.4 1198.2 1480.8 1179.3 1282.5 453.1 FALSE FALSE TRUE 1039.122122 903.9162496 1286.905547 1095.841813 1404.538193 1175.346331 1537.914952 1313.546745 1229.634807 450.404941 2.307084198 2.006896833 2.857218982 2.433014634 3.118389842 2.609532499 3.414516165 2.916368417 2.730065093 1 8.815078844 -8.814386436 0.207468036 7.40E-20 3.421624952 0.137282365 0.595032009 1.272333689 0.110131864 1.309262765 0.426641649 1.53E-09 8.814386436 3.421624952 DINLQDEDWNEFNDINK ddPTM_HeLa_CUDC101_4h_R1 1 DINLQDEDWNEFNDINK 17 0 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 221.85 6.01E-32 9815200 3394.7 2486.2 2297.1 2529.6 3017.8 3195.9 2435.4 2547.7 3104 2901.8 FALSE FALSE TRUE 2996.778412 2562.796875 2421.288174 2632.768022 2795.182906 3134.943532 2529.334194 2837.71987 2976.051806 2884.539965 1.038910346 0.888459479 0.839401847 0.912716778 0.969022077 1.08680884 0.87685878 0.983768609 1.031724935 1 11.49412554 -7.273855141 24.79463635 1.018374331 0.936766059 0.269562827 0.065330451 730.6029508 1459031.692 0.011569912 0.013278088 5.32E-08 7.273855141 -0.081608272 S(ph)CSSPAVSAVSQLPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SCSSPAVSAVSQLPLSPK 18 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 2 0 S(0.493)CS(0.055)S(0.451)PAVS(0.001)AVSQLPLS(1)PK 209.25 5.28E-23 29892000 3683.7 3313.8 2737.5 3012.4 2957.5 3026.9 3116.4 2469.6 3188.3 2432.4 TRUE FALSE FALSE 3251.90227 3415.89425 2885.49753 3135.258693 2739.331117 2969.166926 3236.600592 2750.729282 3056.876925 2417.931977 1.344910569 1.412733809 1.193374155 1.296669519 1.132923152 1.227977856 1.338582153 1.137637166 1.264252656 1 11.23955794 -9.371510983 1.103132304 1.00045455 1.267650235 0 0.117628451 0.293722848 0.641172156 0.059956422 0.015601795 4.25E-10 9.371510983 0.267195685 DIPYHNR ddPTM_HeLa_CUDC101_4h_R1 2 DIPYHNR 7 0 Q14432;Q13370-2;Q13370 Q14432 PDE3A;PDE3B "cGMP-inhibited 3,5-cyclic phosphodiesterase A;cGMP-inhibited 3,5-cyclic phosphodiesterase B" 0 0 ; ; 122.78 0.010743 13495100 7910.6 6614.9 8026.2 7761.1 8100.2 7079.3 6749.2 6054.1 7784.7 6548.7 FALSE FALSE TRUE 6983.33146 6818.697228 8460.12065 8077.631204 7502.664384 6944.274147 7009.518905 6743.274272 7463.811371 6509.748041 1.072749885 1.047459469 1.299608003 1.24085159 1.152527615 1.066750065 1.076772689 1.035873313 1.146559179 1 12.66838599 -7.492799545 1.444286922 1.025105989 1.139258336 0.042817158 0.088558074 0.394542103 1.63177387 0.01791651 0.019320622 3.22E-08 7.492799545 0.114152347 DIQMPDGIRR ddPTM_HeLa_CUDC101_4h_R1 1 DIQMPDGIRR 10 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6I5;A0A2R8Y542 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 113.66 0.005448 5638600 2631 2350.8 2880.7 2828.9 3493.8 3095 2717.9 2668.4 2362.1 1373.2 FALSE FALSE TRUE 2322.598168 2423.225362 3036.439356 2944.27477 3236.069335 3035.968032 2822.730313 2972.15987 2264.733238 1365.032145 1.70149705 1.775214869 2.224445311 2.156927058 2.370690936 2.224100027 2.067885597 2.177355222 1.659106158 1 10.41471921 -7.988268067 0.46741078 0.984399098 2.260761992 0.673911617 0.222136048 0.165018416 0.087931197 0.085285936 0.051464052 1.03E-08 7.988268067 1.276362894 LFDEEEDS(ph)SEKLFDDSDER ddPTM_HeLa_CUDC101_4h_R1 3 LFDEEEDSSEKLFDDSDER 19 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 LFDEEEDS(0.5)S(0.5)EKLFDDSDER;LFDEEEDS(0.844)S(0.156)EKLFDDS(0.001)DER;LFDEEEDS(0.851)S(0.149)EKLFDDSDER ;; 104.78 0.00035427 41519000 9776.1 7154.2 6826.1 7002.7 5593.2 5322.5 4863.6 3580.7 9416.2 11106.7 TRUE FALSE FALSE 8630.160378 7374.612422 7195.139614 7288.300374 5180.600779 5220.98218 5051.190681 3988.312414 9028.06025 11040.63685 0.781672334 0.667951724 0.651696067 0.660134055 0.469230249 0.472887774 0.457508996 0.361239344 0.81771191 1 13.43053577 -5.977289024 0.185023452 1.128751401 0.049535277 0.877539176 0.065498054 0.749831553 0.055559234 0.083087029 0.229210828 1.05E-06 5.977289024 -1.079216124 TEESPASDEAGEKEAKS(ph)D ddPTM_HeLa_CUDC101_4h_R1 4 TEESPASDEAGEKEAKSD 18 2 P05114;A6NEL0;A6NL93 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 TEESPASDEAGEKEAKS(1)D;TEESPASDEAGEKEAKS(1)D;TEESPASDEAGEKEAKS(1)D;TEESPASDEAGEKEAKS(1)D ;;; 98.957 0.0020902 611015000 12870.8 11627.7 13692.3 11988.2 11373.1 11848.4 12125.8 11553 12186.5 15613.8 TRUE FALSE FALSE 11362.10433 11985.93565 14432.54715 12477.13061 10534.12907 11622.41151 12593.49617 12868.14682 11684.16731 15520.92842 0.732050559 0.772243472 0.929876536 0.803890739 0.678704829 0.748821926 0.811388071 0.829083575 0.752800799 1 13.92192724 -9.369924276 0.966903342 1.006916659 0.784614423 0 0.098357025 0.335634388 0.533181638 0.054226631 0.01240011 4.27E-10 9.369924276 -0.222302236 S(ph)PPKVPIVIQDDSLPAGPPPQIR ddPTM_HeLa_CUDC101_4h_R1 2 SPPKVPIVIQDDSLPAGPPPQIR 23 1 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 S(1)PPKVPIVIQDDSLPAGPPPQIR;S(1)PPKVPIVIQDDSLPAGPPPQIR ; 159.75 4.89E-08 222590000 1843.31 1746.73 1403.89 1683.13 1784.53 1547.06 1642.27 1540.72 1587.49 1896.81 TRUE FALSE FALSE 1627.239996 1800.544681 1479.78854 1751.775317 1652.888777 1517.552408 1705.612904 1716.109337 1522.05299 1885.52769 0.863015698 0.954928793 0.784814006 0.929063692 0.876618671 0.804842282 0.904581202 0.910148043 0.80722919 1 10.88075262 -9.369840223 0.659731916 1.018908071 0.874986631 0 0.077984978 0.724963742 0.445542464 0.062271467 0.009955181 4.27E-10 9.369840223 -0.143921441 VDS(ph)PTVTTTLK ddPTM_HeLa_CUDC101_4h_R1 2 VDSPTVTTTLK 11 0 Q07866-6;Q07866-4;G3V5R9;Q07866-9;Q07866-7;H0YG16;G3V3H3;Q07866-10;Q07866-5;Q07866-3;G5E9S8;F8W6L3;Q07866;Q07866-8;Q07866-2;G3V2E7;E7EVH7;H0YJT3;H0YJL0;H0YJU9 Q07866-6 KLC1 Kinesin light chain 1 1 0 VDS(0.995)PT(0.005)VTTTLK;VDS(0.987)PT(0.013)VTTTLK ; 175.48 4.47E-07 187810000 9156.4 8074.6 7224.3 7706.6 7350.5 6602.1 6750.5 5378.4 7970.5 4878.1 TRUE FALSE FALSE 8083.100672 8323.368855 7614.86751 8020.908459 6808.268259 6476.175942 7010.869046 5990.655316 7641.952616 4849.084844 1.666933232 1.716482413 1.570372092 1.654107675 1.404031581 1.335546015 1.445812823 1.235419777 1.575957704 1 12.24349678 -9.369670572 1.101970316 1.001001091 1.518130279 0 0.227587825 0.279547511 0.609112115 0.110303778 0.028748861 4.27E-10 9.369670572 0.517129189 GEGDAPFSEPGTTST(ph)QRPS(ph)SPETATK ddPTM_HeLa_CUDC101_4h_R1 1 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GEGDAPFS(0.112)EPGT(0.032)T(0.086)S(0.088)T(0.666)QRPS(0.413)S(0.416)PET(0.164)AT(0.023)K 67.097 0.0015208 48317000 3140.2 2990.6 3263.4 2237.9 2899.7 2784.8 2807 2681.6 2934.5 4654.8 TRUE FALSE FALSE 2772.110516 3082.736841 3439.829275 2329.171235 2685.794908 2731.68458 2915.26693 2986.862505 2813.538668 4627.113043 0.599101533 0.666233311 0.743407227 0.503374613 0.580447221 0.590364781 0.630040136 0.645513191 0.60805488 1 12.17589663 -9.369469984 0.568168751 1.080694564 0.608034812 0 0.135746728 0.385170985 0.165176123 0.099056039 0.014269881 4.27E-10 9.369469984 -0.472659753 QLHVLVPQS(ph)PPTDLPGLTR ddPTM_HeLa_CUDC101_4h_R1 2 QLHVLVPQSPPTDLPGLTR 19 0 O95402 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 QLHVLVPQS(0.978)PPT(0.013)DLPGLT(0.009)R;QLHVLVPQS(0.999)PPT(0.001)DLPGLTR ; 76.744 0.0057308 38882000 4823.8 4259.1 4637.6 4229 4874.8 4186.3 3896.3 4429.3 4161.4 5132.9 TRUE FALSE FALSE 4258.361476 4390.317823 4888.322684 4401.476899 4515.195716 4106.453302 4046.581596 4933.513608 3989.865331 5102.369283 0.834585119 0.860446898 0.958049567 0.862633936 0.88492139 0.804813034 0.793078935 0.966906418 0.781963263 1 12.3169516 -9.36922497 0.946292739 1.005075758 0.866146999 0 0.086304415 0.440281874 0.663549601 0.044042859 0.009865753 4.27E-10 9.36922497 -0.138928759 GLS(ph)GEEEDDEPDCCNDER ddPTM_HeLa_CUDC101_4h_R1 3 GLSGEEEDDEPDCCNDER 18 0 Q6P158;Q6P158-2;A0A087WW12;A0A087WZ11;Q6P158-3 Q6P158 DHX57 Putative ATP-dependent RNA helicase DHX57 1 0 GLS(1)GEEEDDEPDCCNDER;GLS(1)GEEEDDEPDCCNDER;GLS(1)GEEEDDEPDCCNDER ;; 233.84 1.06E-43 46840200 4999.8 3744 3491.22 3258.96 3456.38 3715.5 3475 2906 4339.45 915.37 TRUE FALSE FALSE 4413.731023 3859.348202 3679.965914 3391.874475 3201.409733 3644.633028 3609.031914 3236.807294 4160.576034 909.9253385 4.850651846 4.241389968 4.044250399 3.727640425 3.518321337 4.005419866 3.966294553 3.557222946 4.572436724 1 9.829604363 -9.368967404 1.039452495 0.961935734 4.036261844 0 1.146280133 0.143566884 0.272094241 0.329845436 0.081217616 4.28E-10 9.368967404 3.074326111 DISLSDYK(ac)GK ddPTM_HeLa_CUDC101_4h_R1 1 DISLSDYKGK 10 1 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 1 DISLSDYK(1)GK 137.98 0.0011 1039000 504.67 384.96 267.64 321.24 358.73 416.33 428.66 590.03 435.58 154.79 FALSE TRUE FALSE 445.5133476 396.8201613 282.109428 334.3415557 332.2672026 408.3891989 445.1935598 657.1966302 417.625208 153.8693022 2.895401105 2.57894301 1.833435415 2.172893169 2.159411902 2.654130441 2.893322797 4.271135443 2.714155469 1 7.265561624 -9.981478197 0.432087661 3.04E-27 2.733377517 0 0.818272609 2.408277302 0.385954556 3.195692082 0.187578531 1.04E-10 9.981478197 2.733377517 SSPYGT(ph)LKPEEMSGPGLAEPK ddPTM_HeLa_CUDC101_4h_R1 1 SSPYGTLKPEEMSGPGLAEPK 21 1 Q5JSZ5;A0A494C0D3;Q5JSZ5-5;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 S(0.022)S(0.022)PY(0.392)GT(0.564)LKPEEMS(0.001)GPGLAEPK 69.747 0.0057295 22540000 1118 1156.2 1028.1 950.89 1261.8 1091.4 1055.1 845.14 1321.6 1454.8 TRUE FALSE FALSE 986.9497348 1191.821152 1083.682196 989.6714043 1168.719528 1070.583363 1095.79556 941.3473214 1267.123089 1446.146785 0.682468574 0.824135671 0.749358369 0.684350589 0.808161066 0.740300621 0.757734672 0.650934837 0.876206414 1 10.49799828 -9.368584647 0.873484503 1.015937072 0.736967474 0.594333741 0.063262782 0.241489356 0.298549443 0.046780371 0.009682318 4.28E-10 9.368584647 -0.278969599 DITAEEEEEEVESLK ddPTM_HeLa_CUDC101_4h_R1 1 DITAEEEEEEVESLK 15 0 V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23;A0A2R8YF29 V9GYZ0 PANK2 "Pantothenate kinase 2, mitochondrial" 0 0 208.27 1.03E-32 0 825.42 584.45 747.56 616.69 724.7 649.55 747.78 689.82 963.09 737.56 FALSE FALSE TRUE 728.6655189 602.4562118 787.9753548 641.8412838 671.2403248 637.160916 776.6221251 768.3463205 923.3910226 733.1729603 0.993852144 0.821710898 1.074746884 0.875429562 0.915527933 0.869045847 1.059261821 1.047974164 1.259445005 1 9.51800977 -7.47862242 24.97697223 0.997287844 0.950023813 0.093937034 0.116444276 912.4141751 514943.2829 0.013523229 0.015373416 3.32E-08 7.47862242 -0.047264031 QSSVTQVTEQS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 QSSVTQVTEQSPK 13 0 Q14966-3;Q14966;Q14966-4;C9JWN0;Q14966-2;Q14966-6 Q14966-3 ZNF638 Zinc finger protein 638 1 0 QSSVTQVT(0.004)EQS(0.996)PK;QSSVTQVT(0.009)EQS(0.991)PK ; 229.23 2.14E-33 34272000 7326.4 6459 7004.1 6517.4 6652.5 6957 6062.9 6062.9 6473.8 7870.7 TRUE FALSE FALSE 6467.610498 6657.994134 7382.762832 6783.207743 6161.758329 6824.306816 6296.748084 6753.076029 6206.947224 7823.884726 0.826649513 0.850983158 0.943618559 0.866987178 0.787557402 0.872240205 0.804810948 0.863135931 0.793333164 1 12.9336694 -9.368319394 0.769090876 1.015103933 0.849789131 0 0.075824961 0.419057519 0.377053278 0.0450996 0.008258193 4.28E-10 9.368319394 -0.165314802 DGWS(ph)LDRDR ddPTM_HeLa_CUDC101_4h_R1 3 DGWSLDRDR 9 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 DGWS(1)LDRDR;DGWS(1)LDRDR;DGWS(1)LDRDR ;; 160.91 0.00031825 67237000 14742.8 12857 13891.7 12555.2 14185.3 14008.7 13132.6 10687.7 16068.6 14948.7 TRUE FALSE FALSE 13014.67133 13253.10893 14642.72732 13067.25532 13138.87868 13741.50739 13639.12878 11904.34457 15406.24551 14859.78447 0.87583177 0.891877602 0.985392982 0.879370448 0.884190394 0.924744731 0.917855088 0.801111523 1.036774493 1 13.85912557 -9.368251973 0.874124823 1.006249255 0.896979719 0.527406391 0.04567724 0.513289755 0.635839704 0.038955663 0.008072664 4.28E-10 9.368251973 -0.109269536 DITSAVQSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 DITSAVQSKR 10 1 Q14686;F6M2K2 Q14686 NCOA6 Nuclear receptor coactivator 6 0 1 DITSAVQSK(1)R 107.55 0.0065908 1172800 65.141 168.1 281.98 402.52 527.81 864.75 895.88 1087.5 169.53 113.71 FALSE TRUE FALSE 57.50527073 173.2789618 297.2246917 418.9365054 488.8745078 848.2563345 930.4343917 1211.296604 162.5419016 113.0336479 0.508744713 1.532985664 2.629524017 3.706299083 4.325035218 7.504458633 8.231481592 10.71624801 1.437995718 1 6.820608488 -5.066339688 0.576646468 0.690528851 12.6961918 0.978424795 0.4892615 0.15594577 0.059626487 0.095626304 1.051032698 8.58E-06 5.066339688 12.00566295 DITSDTSGDFR ddPTM_HeLa_CUDC101_4h_R1 3 DITSDTSGDFR 11 0 P04083;Q5T3N1 P04083 ANXA1 Annexin A1;Annexin 0 0 ;; ;; 182.16 7.63E-10 195591000 8439.5 7037.8 7101.5 7202.4 8085.5 7242.6 6632.8 6738.2 7260.7 7741.7 FALSE FALSE TRUE 7450.234603 7254.626276 7485.428571 7496.145003 7489.048774 7104.459472 6888.629318 7505.249451 6961.410873 7695.652024 0.9681096 0.942691568 0.972682828 0.974075358 0.973153249 0.923178367 0.895132641 0.975258422 0.904590131 1 12.90982785 -6.121643726 0.009113678 1.910474689 5.10E-06 0 0.038297408 1834.42866 6.090309299 621.5593854 655.0008195 7.56E-07 6.121643726 -1.910469592 DIVEAHYR ddPTM_HeLa_CUDC101_4h_R1 1 DIVEAHYR 8 0 P15104;A0A2R8YDT1 P15104 GLUL Glutamine synthetase 0 0 124.98 0.0060286 2568000 3194.9 2761 1737.9 2450.6 2456.7 2417.9 2430.3 2205.7 1831.5 2065.8 FALSE FALSE TRUE 2820.398665 2846.063137 1831.856131 2550.54606 2275.474135 2371.782586 2524.037485 2456.787972 1756.004795 2053.51253 1.373450916 1.385948757 0.892059875 1.242040661 1.108088752 1.154988125 1.229131767 1.196383239 0.855122513 1 11.00387803 -9.648070577 1.508181947 1.000894068 1.219700388 0.330236088 0.141716392 0.459637179 1.892222096 0.098965452 0.022781521 2.25E-10 9.648070577 0.21880632 DIWPTRDEIQAVER ddPTM_HeLa_CUDC101_4h_R1 1 DIWPTRDEIQAVER 14 1 P21399 P21399 ACO1 Cytoplasmic aconitate hydratase 0 0 121.56 0.0017028 14062000 1621.7 1573.9 1511.4 1298.2 1884 1932.3 2013.3 1350.5 1641.8 1481.8 FALSE FALSE TRUE 1431.606784 1622.389993 1593.110856 1351.146207 1745.021073 1895.444597 2090.953655 1504.235461 1574.124309 1472.986188 0.971907813 1.101429197 1.081551795 0.917283691 1.184682577 1.286804053 1.419533783 1.021214913 1.068661962 1 10.52452819 -5.608655334 4.9727956 0.999883869 1.25691247 0.466356515 0.106165736 0.105769805 4.532250345 0.014135205 0.028873326 2.46E-06 5.608655334 0.257028601 SES(ph)LSNCSIGK ddPTM_HeLa_CUDC101_4h_R1 1 SESLSNCSIGK 11 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.006)ES(0.497)LS(0.497)NCSIGK 198.52 2.63E-16 78363000 2912.4 2098.5 2385.2 2218.9 2541.1 2412.7 2089 2025.4 2310.6 1483.2 TRUE FALSE FALSE 2571.012887 2163.152298 2514.151127 2309.396333 2353.648116 2366.681767 2169.57343 2255.963349 2215.35609 1474.37786 1.743795099 1.467162765 1.705228486 1.5663531 1.596366969 1.605207071 1.471517911 1.530112063 1.502570101 1 10.5258906 -9.368204733 0.990621071 0.985199837 1.594029985 0.198711171 0.173476073 0.158171344 0.266824726 0.070629713 0.016591245 4.28E-10 9.368204733 0.608830149 DK(ac)DAYSSFGSR ddPTM_HeLa_CUDC101_4h_R1 1 DKDAYSSFGSR 11 1 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;F6S8Q4;A0A2R8Y645;O00571;O00571-2;A0A2U3TZJ9;A0A0D9SFB3;A0A0D9SF53;A0A0D9SG12;A0A2R8YF78;O15523-2;O15523;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89;A0A087WX09;C9J081;C9J8G5;O15523-3 A0A2R8Y5G6 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 1 DK(1)DAYSSFGSR 85.973 0.030594 2230900 2116.6 1348.2 1338.5 1371.9 2065.1 1915.9 1918.2 1851.6 1881.5 1630.4 FALSE TRUE FALSE 1868.495357 1389.736444 1410.863359 1427.852012 1912.761687 1879.3574 1992.185617 2062.37866 1803.943774 1620.702308 1.152892389 0.85749026 0.870525914 0.881008193 1.180205444 1.159594449 1.229211316 1.272521578 1.113063 1 10.6624034 -5.589534121 10.01481676 1.027229804 1.212800473 0.523014988 0.102625199 0.336533952 48.23321133 0.017862938 0.035753341 2.57E-06 5.589534121 0.185570669 DK(ac)GEYTLVVK ddPTM_HeLa_CUDC101_4h_R1 2 DKGEYTLVVK 10 1 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 1 ; DK(1)GEYTLVVK;DK(1)GEYTLVVK 158.41 0.00050474 18137500 6336.7 2984.7 2602 2356.38 5200.3 5000.1 6016.9 4988.6 4676.1 3650 FALSE TRUE FALSE 5593.921632 3076.655069 2742.671991 2452.483362 4816.684229 4904.731423 6248.973849 5556.482059 4483.349179 3628.289638 1.541751677 0.847962918 0.755913189 0.675933734 1.327535757 1.351802616 1.722291899 1.531432883 1.235664632 1 11.82507391 -5.073290785 2.385256471 1.149681272 1.621849558 0.399336491 0.265754582 0.330025245 3.633164408 0.0483727 0.165057151 8.45E-06 5.073290785 0.472168287 DK(ac)HIEEVR ddPTM_HeLa_CUDC101_4h_R1 1 DKHIEEVR 8 1 P16949 P16949 STMN1 Stathmin 0 1 DK(1)HIEEVR 82.749 0.0099816 0 1084.8 918.99 870.56 966.66 1040.5 826.58 883.55 798.22 962.34 936.75 FALSE TRUE FALSE 957.6413885 947.3029926 917.6251069 1006.084573 963.744388 810.8143637 917.6288195 889.0861383 922.6719379 931.1781693 1.028419072 1.017316582 0.985445253 1.080442612 1.034973134 0.870740306 0.98544924 0.954797017 0.990865087 1 9.862913426 -5.292405144 24.98049106 1.018255396 0.941840862 0.51300203 0.03679097 390.3002735 314859.8397 0.0049734 0.011122061 5.10E-06 5.292405144 -0.076414534 DK(ac)PHVNVGTIGHVDHGK ddPTM_HeLa_CUDC101_4h_R1 2 DKPHVNVGTIGHVDHGK 17 1 P49411;H3BNU3 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 1 ; DK(1)PHVNVGTIGHVDHGK;DK(1)PHVNVGTIGHVDHGK 49.621 0.027114 10354200 8255 3893 3424.7 3510.6 8167.3 6930.9 7005.7 5516.8 5926.3 5115.1 FALSE TRUE FALSE 7287.361414 4012.938716 3609.849641 3653.777442 7564.814551 6798.70463 7275.912196 6144.810212 5682.015406 5084.675158 1.433200979 0.78922224 0.709946954 0.718586208 1.48776752 1.337097144 1.430949268 1.208496123 1.117478547 1 12.31193989 DK(ac)PLKDVIIADCGK ddPTM_HeLa_CUDC101_4h_R1 1 DKPLKDVIIADCGK 14 2 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 1 DK(0.978)PLK(0.022)DVIIADCGK 124.16 0.0066653 1094000 1749.8 587.95 649.63 702.15 1248.4 1462.4 1612.5 1460.8 1361.1 890.43 FALSE TRUE FALSE 1544.691097 606.0640426 684.7509628 730.786712 1156.308019 1434.507157 1674.694665 1627.091567 1304.994882 885.1336828 1.745150057 0.684714698 0.773613044 0.825622983 1.306365402 1.620667233 1.892024558 1.838243871 1.474347782 1 9.789751553 -5.121165446 2.683258522 1.219152811 1.857111435 0.465681177 0.321937155 0.273362237 3.780360078 0.059331534 0.184227345 7.57E-06 5.121165446 0.637958624 DK(ac)QMELLENK ddPTM_HeLa_CUDC101_4h_R1 1 DKQMELLENK 10 1 E9PI87;Q9BUP3;Q9BUP3-3 E9PI87 HTATIP2 Oxidoreductase HTATIP2 0 1 DK(1)QMELLENK 97.452 0.01875 0 111.93 0 0 99.081 58.92 50.829 112.14 114.65 116.29 169.07 FALSE TRUE FALSE 98.80973507 0 0 103.1219514 54.57358899 49.85952151 116.4652774 127.7012926 111.496477 168.0643641 0.587927938 0 0 0.613586063 0.324718386 0.296669206 0.692980204 0.759835633 0.663415338 1 7.392870042 -8.260371642 1.09250515 0.926317082 0.393953241 0.27412106 0.265867219 0.312185456 0.770810869 0.07966969 0.055960777 5.49E-09 8.260371642 -0.532363841 DK(ac)TVVAYNWK(ac)TGNVVK ddPTM_HeLa_CUDC101_4h_R1 2 DKTVVAYNWKTGNVVK 16 2 Q8NA23-2;Q8NA23 Q8NA23-2 WDR31 WD repeat-containing protein 31 0 2 ; DK(1)TVVAYNWK(1)TGNVVK;DK(1)TVVAYNWK(1)TGNVVK 119.45 0.018917 3596300 0 181.15 1120.79 1065.75 3797.6 4656.2 2156.08 1600.1 158.31 0 FALSE TRUE FALSE 0 186.7310168 1181.383298 1109.215892 3517.458614 4567.390743 2239.240728 1782.248916 151.7843948 0 0 S(ph)PSPPLPTHIPPEPPRT(ph)PPFPAK ddPTM_HeLa_CUDC101_4h_R1 1 SPSPPLPTHIPPEPPRTPPFPAK 23 1 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 2 0 S(0.678)PS(0.241)PPLPT(0.082)HIPPEPPRT(0.999)PPFPAK 86.577 0.00017972 43179000 1372.8 1329.1 1110.3 1217.9 1360.8 1364.6 1234.7 1550.3 1462.2 1697.9 TRUE FALSE FALSE 1211.882465 1370.047996 1170.326176 1267.571226 1260.416495 1338.572529 1282.322793 1726.779885 1401.927497 1687.800815 0.718024576 0.811735593 0.693403016 0.751019442 0.746780357 0.793086789 0.759759553 1.023094591 0.830623782 1 10.72092894 -9.36714261 1.030874132 1.003146101 0.777052347 0.123935644 0.100024062 0.363587864 0.675942983 0.061195792 0.014983712 4.29E-10 9.36714261 -0.226093754 TLHCEGT(ph)EINSDDEQESKEVEETATAK ddPTM_HeLa_CUDC101_4h_R1 1 TLHCEGTEINSDDEQESKEVEETATAK 27 1 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 TLHCEGT(0.542)EINS(0.458)DDEQESKEVEETATAK 101.86 1.13E-06 184450000 1847 1475.8 1552.7 1327.6 1779.1 1462.4 1802.1 1362.1 1482.2 1355.7 TRUE FALSE FALSE 1630.49746 1521.267649 1636.643659 1381.745266 1647.859337 1434.507157 1871.607601 1517.155958 1421.103089 1347.636236 1.209894344 1.128841454 1.214455069 1.025310265 1.222777552 1.064461698 1.388807714 1.125790416 1.054515344 1 10.39621541 -9.366265332 0.84635682 0.987746441 1.176004677 0.260155868 0.096227749 0.651863804 0.745843675 0.08386649 0.016884565 4.30E-10 9.366265332 0.188258236 DKALEEEEDDRPYDPEEEYDPER ddPTM_HeLa_CUDC101_4h_R1 1 DKALEEEEDDRPYDPEEEYDPER 23 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 0 0 61.139 0.0044874 15547000 3190.6 3253.7 3253.7 3296.8 3174.9 3146.5 3129.7 3498.5 3325.5 3362.8 FALSE FALSE TRUE 2816.602705 3353.94264 3429.604864 3431.257754 2940.693952 3086.485755 3250.413577 3896.755099 3188.421482 3342.797916 0.842588387 1.003333951 1.02596835 1.026462814 0.879710358 0.923324063 0.97236317 1.165716623 0.953818197 1 11.70684043 TGVTSTS(ph)DS(ph)EEEGDDQEGEKK ddPTM_HeLa_CUDC101_4h_R1 1 TGVTSTSDSEEEGDDQEGEKK 21 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 2 0 T(0.005)GVT(0.074)S(0.157)T(0.154)S(0.805)DS(0.805)EEEGDDQEGEKK 88.486 0.00043235 68874000 5440.1 4781.2 5085.7 5046.2 5340.1 5562 5527.7 5318.8 5435 6996 TRUE FALSE FALSE 4802.419725 4928.503105 5360.648325 5252.005848 4946.171462 5455.914117 5740.905241 5924.270693 5210.967 6954.387481 0.690559699 0.708689747 0.770829687 0.755207538 0.711230353 0.784528347 0.825508394 0.851875267 0.749306393 1 12.76370774 -9.366159434 1.060604878 1.001637712 0.756814127 0 0.090013139 0.213393021 0.424979398 0.039278124 0.009907434 4.30E-10 9.366159434 -0.244823585 EQIS(ph)DIDDAVR ddPTM_HeLa_CUDC101_4h_R1 3 EQISDIDDAVR 11 0 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 EQIS(1)DIDDAVR;EQIS(1)DIDDAVR;EQIS(1)DIDDAVR ;; 182.72 1.31E-10 178258000 5171.6 4893.3 4458.3 4173.3 5147.7 5060.2 4284.2 4483.7 5328 5495.3 TRUE FALSE FALSE 4565.392888 5044.056773 4699.329184 4343.505213 4767.964427 4963.685116 4449.443029 4994.106284 5108.377585 5462.613711 0.835752467 0.923377899 0.860271187 0.795133144 0.87283573 0.908664859 0.814526391 0.914233835 0.935152631 1 12.41537569 -9.366013875 0.844552828 1.009601898 0.862400574 0.427941442 0.044646994 0.370387353 0.421592491 0.037218241 0.007480162 4.31E-10 9.366013875 -0.147201324 DKDAYSSFGSR ddPTM_HeLa_CUDC101_4h_R1 1 DKDAYSSFGSR 11 1 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;F6S8Q4;A0A2R8Y645;O00571;O00571-2;A0A2U3TZJ9;A0A0D9SFB3;A0A0D9SF53;A0A0D9SG12;A0A2R8YF78;O15523-2;O15523;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89;A0A087WX09;C9J081;C9J8G5;O15523-3 A0A2R8Y5G6 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 0 98.754 0.018686 30983000 2714.4 2407.8 2447.4 2452.4 2451.7 2405.9 2109.7 2193.9 2454.4 2264.5 FALSE FALSE TRUE 2396.222147 2481.981464 2579.713847 2552.419472 2270.842975 2360.011466 2191.071836 2443.644708 2353.228593 2251.030653 1.064500007 1.102597808 1.146014535 1.133889256 1.008801445 1.04841374 0.973363838 1.085567051 1.04540051 1 11.13636999 -3.908074362 20.04691236 1.046756281 3.788587265 0 0.054676528 1458.191238 339527.2575 0.008335156 12316.96697 0.000123574 3.908074362 2.741830984 DKDDDGGEDDDANCNLICGDEYGPETR ddPTM_HeLa_CUDC101_4h_R1 4 DKDDDGGEDDDANCNLICGDEYGPETR 27 1 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 ;;; ;;; 156.2 2.18E-11 430890000 10234.5 8692.3 8036.1 8667.7 9342.9 10020.2 8576.8 8692.6 9024.9 1906.53 FALSE FALSE TRUE 9034.827424 8960.09946 8470.555874 9021.206271 8653.692881 9829.08138 8907.610049 9682.130447 8652.889802 1895.189875 4.767241291 4.727810959 4.469502495 4.760054067 4.566135033 5.186330674 4.700114837 5.108791777 4.565711287 1 10.88812668 -9.236145912 0.57649088 0.383254838 4.873554364 0.040508213 1.125420018 0.1266067 0.060851143 0.305454192 0.053080336 5.81E-10 9.236145912 4.490299526 TSST(ph)NEDEDLNPEQK ddPTM_HeLa_CUDC101_4h_R1 1 TSSTNEDEDLNPEQK 15 0 Q99081;Q99081-3;B4DGI9;Q99081-4;Q99081-2;B4DZP2;F5GY10 Q99081 TCF12 Transcription factor 12 1 0 TSS(0.093)T(0.906)NEDEDLNPEQK 216 2.13E-23 101490000 5788.9 4879.8 5127.4 4835.6 5532.9 5546.3 5649.3 5533.5 4712.7 6293.6 TRUE FALSE FALSE 5110.333917 5030.140854 5404.602754 5032.816669 5124.74899 5440.513568 5867.195393 6163.411273 4518.440511 6256.165387 0.816847638 0.804029392 0.863884252 0.804457101 0.819151776 0.86962432 0.937826133 0.985173967 0.722238021 1 12.61106294 -9.365990373 1.093719169 0.99986349 0.857127167 0 0.102482323 0.38504331 0.825249391 0.041757216 0.010860105 4.31E-10 9.365990373 -0.142736323 YYGGAGGS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 2 YYGGAGGSPGK 11 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 YYGGAGGS(1)PGK;YYGGAGGS(1)PGK ; 98.182 0.015574 17243100 5826.1 5172.2 4644.8 4922.5 5209.8 4710.9 4266 4872.5 5309.3 7046.6 TRUE FALSE FALSE 5143.17339 5331.549351 4895.911938 5123.260827 4825.483433 4621.047431 4430.541049 5427.165705 5090.448407 7004.68651 0.734247476 0.761140323 0.698948044 0.731404727 0.688893561 0.659707958 0.632510969 0.774790663 0.726720375 1 12.77410477 -9.365975811 0.384402482 1.11199819 0.682062993 0.039329138 0.093925401 0.559556047 0.102112923 0.100796612 0.013454515 4.31E-10 9.365975811 -0.429935197 TVDVPASLPT(ph)PPHNNQEELR ddPTM_HeLa_CUDC101_4h_R1 2 TVDVPASLPTPPHNNQEELR 20 0 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2;H7BY37;H7C2V8;H0Y765 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 1 0 TVDVPAS(0.003)LPT(0.997)PPHNNQEELR;TVDVPASLPT(1)PPHNNQEELR ; 109.91 0.00021639 13616900 2797.2 2708.66 2626.48 2108.57 2558.79 2593.1 2745.07 3238.4 3264.1 3446.6 TRUE FALSE FALSE 2469.316456 2792.110604 2768.475453 2194.566599 2370.03316 2543.640938 2850.948269 3607.046366 3129.552416 3426.09947 0.720736942 0.814953164 0.808054605 0.640543749 0.691758421 0.742430557 0.832126532 1.052814256 0.913444704 1 11.74235132 -9.365427645 0.99635911 1.005045682 0.77698958 0.262816401 0.108652613 0.495084794 0.848044852 0.082902899 0.019667387 4.31E-10 9.365427645 -0.228056102 TATCHSSS(ph)SPPIDAASAEPYGFR ddPTM_HeLa_CUDC101_4h_R1 1 TATCHSSSSPPIDAASAEPYGFR 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.002)AT(0.002)CHS(0.038)S(0.138)S(0.447)S(0.373)PPIDAASAEPYGFR 62.325 0.0052957 12104000 499.85 438.85 436 453.88 496.95 540.02 470.82 361.94 363.09 554.26 TRUE FALSE FALSE 441.2583407 452.3704483 459.5714788 472.3911882 460.2909886 529.7200182 488.9796851 403.1417866 348.1232765 550.9632369 0.80088527 0.82105378 0.834123673 0.857391486 0.835429585 0.961443492 0.887499659 0.731703605 0.631844837 1 9.105812248 -9.365065819 1.051412076 1.001360416 0.843072598 0 0.12695369 0.34431564 0.671830113 0.040828008 0.010225841 4.31E-10 9.365065819 -0.158287817 DGDSYDPYDFSDT(ph)EEEMPQVHT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 2 0 DGDSYDPY(0.012)DFS(0.393)DT(0.612)EEEMPQVHT(0.982)PK;DGDSYDPYDFS(0.471)DT(0.557)EEEMPQVHT(0.972)PK ; 110.25 4.95E-07 472413000 6732.9 6223.8 5483.9 5756.2 6997.1 6189.2 5571.4 5983.1 6747.9 6883.2 TRUE FALSE FALSE 5943.679668 6415.547901 5780.376222 5990.962716 6480.937873 6071.151322 5786.290764 6664.191919 6469.748706 6842.25842 0.868672199 0.937636012 0.844805306 0.875582644 0.947192794 0.887302254 0.84566972 0.973975479 0.945557491 1 12.74025688 -9.36482889 0.958587337 1.003485669 0.89399714 0.286476388 0.044160331 0.393560618 0.613517804 0.031141398 0.007112874 4.32E-10 9.36482889 -0.109488529 LFS(ph)DEDDR ddPTM_HeLa_CUDC101_4h_R1 1 LFSDEDDR 8 0 Q5TKA1-2;B1B047;H0Y322;Q5TKA1 Q5TKA1-2 LIN9 Protein lin-9 homolog 1 0 LFS(1)DEDDR 114.86 0.0093654 2989700 1833.1 1754.7 1881.1 1746.1 1806.5 1995.6 1885.6 2076.4 2415.1 2837.5 TRUE FALSE FALSE 1618.226797 1808.760227 1982.797956 1817.313505 1673.238094 1957.537255 1958.328224 2312.768983 2315.548556 2820.622424 0.573712661 0.641262798 0.702964686 0.644295206 0.593215909 0.694008967 0.694289391 0.819949868 0.820935314 1 11.46179784 -9.364632623 1.028995849 1.004757707 0.662114434 0.534581767 0.08343864 0.201968154 0.374212046 0.05142507 0.012614344 4.32E-10 9.364632623 -0.342643273 DFTNEAPPAPLPDASASPLS(ph)PHR ddPTM_HeLa_CUDC101_4h_R1 1 DFTNEAPPAPLPDASASPLSPHR 23 0 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DFTNEAPPAPLPDAS(0.24)AS(0.24)PLS(0.519)PHR 76.749 0.00070126 44669000 1346.4 1320.3 941.46 833.88 1353.4 1200.1 967.56 700.27 1022 756.67 TRUE FALSE FALSE 1188.577033 1360.976878 992.3581754 867.8892307 1253.562378 1177.210092 1004.879113 779.9859062 979.8727274 752.1692932 1.580198825 1.809402339 1.319328221 1.153848261 1.666596057 1.565086614 1.335974657 1.036981851 1.302728968 1 9.5549136 -9.36448086 1.11797483 1.002930794 1.450927581 0.136793598 0.239691882 0.442779937 1.000098086 0.151693908 0.040394231 4.32E-10 9.36448086 0.447996786 LSSPAAFLPACNS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 LSSPAAFLPACNSPSK 16 0 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5;H0YFE9 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 LSSPAAFLPACNS(0.954)PS(0.046)K;LSSPAAFLPACNS(0.5)PS(0.5)K ; 156.17 9.30E-05 147998000 4795.5 4283.4 3754.7 3331.4 4286.2 4243.4 3519.7 2837.2 4296.2 2783.5 TRUE FALSE FALSE 4233.37876 4415.366477 3957.690439 3467.268892 3970.015565 4162.464215 3655.456008 3160.17538 4119.108818 2766.943618 1.529983745 1.595755854 1.430347338 1.25310428 1.434801757 1.504354548 1.321116912 1.142117736 1.488685491 1 11.43407753 -9.364392027 1.09161972 1.000328458 1.414141522 0 0.195885549 0.296720415 0.633424514 0.093160488 0.02423834 4.32E-10 9.364392027 0.413813064 DKFQETSDEFEAAR ddPTM_HeLa_CUDC101_4h_R1 2 DKFQETSDEFEAAR 14 1 Q14683;G8JLG1;V9GY57 Q14683 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein 0 0 ; ; 104.7 0.00087498 9914700 2172.6 2002.93 1975.02 2074.4 1793.18 2392.2 1620.7 2265.4 2419.6 2280.2 FALSE FALSE TRUE 1917.931121 2064.637899 2081.795555 2159.002998 1660.900684 2346.572771 1683.210942 2523.283979 2319.863064 2266.637269 0.846157057 0.910881475 0.918451127 0.952513676 0.732759805 1.03526612 0.742602694 1.113227958 1.023482273 1 11.14633782 -9.515423462 1.26255634 1.000112376 0.895224672 0.114836043 0.111435296 0.757426802 2.157667971 0.06829529 0.01636793 3.05E-10 9.515423462 -0.104887704 DKGEYTLVVK ddPTM_HeLa_CUDC101_4h_R1 2 DKGEYTLVVK 10 1 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 ; ; 108.9 0.010941 56755000 3577 3817.4 3686.8 3706.9 4173.1 3646 3757.1 3894.5 4214.2 5008.4 FALSE FALSE TRUE 3157.709482 3935.009569 3886.11956 3858.083405 3865.258727 3576.458625 3902.012606 4337.834138 4040.488892 4978.609814 0.634255264 0.790383203 0.78056319 0.774931868 0.776373098 0.718364917 0.783755456 0.871294257 0.811569704 1 12.28152724 -9.518139971 1.269581345 1.000110928 0.751739181 0.196816332 0.080624003 0.22025662 0.635108428 0.047183908 0.011323023 3.03E-10 9.518139971 -0.248371747 DKLESEMEDAYHEHQANLLR ddPTM_HeLa_CUDC101_4h_R1 3 DKLESEMEDAYHEHQANLLR 20 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 ;; ;; 161.2 2.38E-06 115045000 11234.4 9868.1 10272.6 10546.6 12617.9 11324.9 11334.3 10122.5 11601.7 11392.9 FALSE FALSE TRUE 9917.520662 10172.12446 10827.96783 10976.73593 11687.10266 11108.8964 11771.46775 11274.80448 11123.47302 11325.13452 0.875708862 0.898190167 0.956100593 0.969236693 1.031961486 0.980906353 1.039410854 0.995555899 0.982193456 1 13.46724057 -6.063737623 2.458796477 0.936648815 1.011611832 0.424605805 0.037648285 0.272168326 3.24955121 0.007859207 0.014466266 8.64E-07 6.063737623 0.074963017 DKLNNLVLFDK ddPTM_HeLa_CUDC101_4h_R1 2 DKLNNLVLFDK 11 1 P62851 P62851 RPS25 40S ribosomal protein S25 0 0 ; ; 110.92 0.00837 19054400 11366.1 9685.1 8749.7 9721.4 10641.2 9632.3 9726.5 9456.9 9381.9 9603.6 FALSE FALSE TRUE 10033.78299 9983.486451 9222.735248 10117.88071 9856.219876 9448.579926 10101.65436 10533.43527 8995.174111 9546.47736 1.051045596 1.045777 0.966087793 1.05985489 1.032445739 0.989745177 1.058155169 1.103384513 0.942250609 1 13.22075276 -4.468185909 3.897768268 1.023236743 1.099140647 0.344218029 0.037818448 0.169684688 4.94674173 0.004076661 0.025597169 3.40E-05 4.468185909 0.075903904 QTQSESSNYDS(ph)ELEKEIK ddPTM_HeLa_CUDC101_4h_R1 4 QTQSESSNYDSELEKEIK 18 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 QTQS(0.008)ES(0.04)S(0.126)NY(0.112)DS(0.714)ELEKEIK;QTQS(0.006)ES(0.106)S(0.106)NY(0.006)DS(0.776)ELEKEIK;QT(0.002)QS(0.035)ES(0.018)S(0.031)NY(0.01)DS(0.905)ELEKEIK;QTQS(0.005)ES(0.026)S(0.019)NY(0.01)DS(0.939)ELEKEIK ;;; 70.959 0.01019 156802000 6767.6 6203.8 6406.9 5925.4 6648.5 5805.8 6367.6 5791.6 6688.5 7558.3 TRUE FALSE FALSE 5974.312187 6394.931725 6753.276394 6167.063424 6158.053401 5695.064038 6613.200465 6450.892334 6412.797199 7513.342895 0.795160326 0.851143334 0.898837773 0.82081485 0.819615647 0.757993362 0.88019415 0.858591498 0.853521167 1 12.87523923 -9.364183962 0.926253379 1.007106879 0.832805439 0.108771005 0.058958311 0.276453308 0.396166791 0.034310006 0.00757856 4.32E-10 9.364183962 -0.17430144 SSLSNNECGSLDKTS(ph)PEMSNSNNDER ddPTM_HeLa_CUDC101_4h_R1 1 SSLSNNECGSLDKTSPEMSNSNNDER 26 1 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 SSLSNNECGS(0.002)LDKT(0.321)S(0.525)PEMS(0.15)NS(0.002)NNDER 125.78 3.67E-11 0 1653.7 1441 1311.6 1528.7 1512.8 1778.9 1424.2 1399.8 1423.2 764.76 TRUE FALSE FALSE 1459.855793 1485.395502 1382.509063 1591.046994 1401.203758 1744.970446 1479.131871 1559.147574 1364.535094 760.2111735 1.920329303 1.953924848 1.818585561 2.092901353 1.84317701 2.295375952 1.945685518 2.050940092 1.79494217 1 9.57025642 -9.364167019 0.420243629 0.662760918 2.055459046 0.263301217 0.277401364 0.44473884 0.097537258 0.275808125 0.036502618 4.32E-10 9.364167019 1.392698128 KSAEPSANTT(ph)LVS(ph)ETEEEGSVPAFGAAAK ddPTM_HeLa_CUDC101_4h_R1 1 KSAEPSANTTLVSETEEEGSVPAFGAAAK 29 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 2 0 KSAEPS(0.002)ANT(0.091)T(0.907)LVS(0.902)ET(0.09)EEEGS(0.007)VPAFGAAAK 79.373 1.23E-05 4383100 968.09 929.39 849.55 733 1089.1 976.95 1112.3 953.99 1027.1 1315.8 TRUE FALSE FALSE 854.6119577 958.0234043 895.4792427 762.8949083 1008.759263 958.3163065 1155.201784 1062.588365 984.7625033 1307.973563 0.653386262 0.732448599 0.684630996 0.583264777 0.771238266 0.732672535 0.883199643 0.812392846 0.752891749 1 10.35311767 -9.363974167 1.042736351 1.002858885 0.726169104 0.067345211 0.10818209 0.300600838 0.575214795 0.062090454 0.015447955 4.33E-10 9.363974167 -0.276689781 KYSDVEVPASVTGYSFASDGDS(ph)GTCSPLR ddPTM_HeLa_CUDC101_4h_R1 2 KYSDVEVPASVTGYSFASDGDSGTCSPLR 29 1 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;P35611-5 E7EV99 ADD1 Alpha-adducin 1 0 KYSDVEVPASVT(0.002)GY(0.001)S(0.002)FAS(0.007)DGDS(0.329)GT(0.329)CS(0.329)PLR;KYSDVEVPAS(0.001)VT(0.003)GY(0.003)S(0.024)FAS(0.039)DGDS(0.364)GT(0.307)CS(0.26)PLR ; 62.827 0.00077988 21692000 4629.4 4447.9 3576.7 3348.5 4414.6 3588.6 3447.9 2656.5 4578.6 2807.9 TRUE FALSE FALSE 4086.74875 4584.934527 3770.067221 3485.066303 4088.943753 3520.153434 3580.886658 2958.905222 4389.86817 2791.198486 1.464155548 1.642640088 1.350698361 1.248591356 1.46494195 1.261161989 1.282920823 1.060084131 1.572753852 1 11.446669 -9.363964505 1.129851357 1.003300321 1.359928212 0 0.229541251 0.371028198 0.859292244 0.101503517 0.027327845 4.33E-10 9.363964505 0.356627891 CDK(ac)GHLVK ddPTM_HeLa_CUDC101_4h_R1 1 CDKGHLVK 8 1 Q8IYL3 Q8IYL3 C1orf174 UPF0688 protein C1orf174 0 1 CDK(1)GHLVK 63.426 0.023926 0 709.76 962.9 1221.1 1396.5 1298.3 1383 1398.3 1850 493.16 621.28 FALSE TRUE FALSE 626.5630087 992.5658077 1287.11636 1453.455306 1202.526996 1356.621579 1452.232899 2060.596522 472.8317361 617.5845989 1.014537943 1.607173834 2.084113435 2.353451347 1.947145375 2.196657076 2.351472012 3.336541302 0.76561452 1 9.270492965 -5.950024425 0.397345365 0.884743199 3.125733134 0.83382822 0.303742535 0.550222616 0.143221991 0.121364776 0.500131606 1.12E-06 5.950024425 2.240989935 up DKPVPLPAPEMTVK(ac)QER ddPTM_HeLa_CUDC101_4h_R1 3 DKPVPLPAPEMTVKQER 17 2 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;B5MCW3;Q9H0E9-3;Q9H0E9;H0YAH7 H7C128 BRD8 Bromodomain-containing protein 8 0 1 ;; DKPVPLPAPEMTVK(1)QER;DKPVPLPAPEMTVK(1)QER;DKPVPLPAPEMTVK(1)QER 145.17 0.0034323 13929000 5158.8 5748.3 5632.4 5394.3 6318.3 5818.7 5925.9 9791.1 6133.8 7273.3 FALSE TRUE FALSE 4554.093284 5925.39831 5936.904581 5614.30287 5852.211597 5707.717992 6154.463948 10905.67925 5880.962168 7230.038088 0.629885103 0.819552848 0.821144302 0.77652466 0.809430258 0.789445079 0.851235342 1.508384757 0.813406803 1 12.81978753 -4.261428611 4.883785255 0.814617083 1.545064157 0.860877845 0.084072501 0.071379478 5.021972694 0.018124731 0.176080955 5.48E-05 4.261428611 0.730447074 FNFESFPES(ph)PGEK ddPTM_HeLa_CUDC101_4h_R1 1 FNFESFPESPGEK 13 0 H0YBR0;Q96Q05-3;Q96Q05;Q96Q05-2 H0YBR0 TRAPPC9 Trafficking protein particle complex subunit 9 1 0 FNFES(0.039)FPES(0.961)PGEK 91.592 0.016224 5209000 2525.1 2258.8 1699 1944.4 2147.2 2480.8 1720 1513.3 2393.2 3195.1 TRUE FALSE FALSE 2229.111606 2328.390951 1790.853079 2023.701036 1988.805334 2433.482873 1786.340976 1685.567955 2294.551283 3176.095403 0.701840254 0.733098555 0.563853679 0.637166325 0.626179343 0.766186957 0.562433035 0.530704447 0.722444068 1 11.63303853 -9.3638708 0.31430614 1.175874552 0.591841299 0.298012509 0.108941327 1.143586807 0.142425344 0.243587784 0.035554893 4.33E-10 9.3638708 -0.584033253 DQPDGSSLS(ph)PAQSPS(ph)QSQPPAASSLR ddPTM_HeLa_CUDC101_4h_R1 1 DQPDGSSLSPAQSPSQSQPPAASSLR 26 0 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 2 0 DQPDGS(0.035)S(0.035)LS(0.589)PAQS(0.499)PS(0.803)QS(0.039)QPPAASSLR 75.509 0.00066162 6627000 849.35 776.02 835.98 824.68 874.8 806.73 764.72 806.99 1114.1 1092.5 TRUE FALSE FALSE 749.7904805 799.9282564 881.1756075 858.314015 810.2677468 791.3429694 794.2155066 898.8544796 1068.176326 1086.001761 0.690413687 0.736580994 0.811394271 0.790343115 0.746101688 0.728675586 0.731320643 0.827673132 0.983586182 1 10.08481073 -9.363586927 1.007460999 1.004789806 0.75304678 0.842462815 0.04032502 0.179456881 0.316040146 0.033288652 0.008006869 4.33E-10 9.363586927 -0.251743025 VTAGWPSEPGQGDLNPES(ph)PAALGQDLLEPR ddPTM_HeLa_CUDC101_4h_R1 1 VTAGWPSEPGQGDLNPESPAALGQDLLEPR 30 0 A0A087X055;Q92766;Q92766-2;Q92766-5;Q92766-3;Q92766-4 A0A087X055 RREB1 Ras-responsive element-binding protein 1 1 0 VTAGWPSEPGQGDLNPES(1)PAALGQDLLEPR 79.534 4.55E-06 2684800 457.75 411.47 440.46 547.1 467.3 438.18 407.27 309.56 457.7 580.98 TRUE FALSE FALSE 404.0932389 424.146903 464.2725999 569.4131028 432.82821 429.8224466 422.9785403 344.7990591 438.8334123 577.5243051 0.699699104 0.734422602 0.803901404 0.985955219 0.749454536 0.74424997 0.732399549 0.597029521 0.759852717 1 9.173737853 -9.363137179 0.982101424 1.006320127 0.758625563 0.000655833 0.117549918 0.418100689 0.69213832 0.075535401 0.017721632 4.33E-10 9.363137179 -0.247694564 LGS(ph)PLAVDEALR ddPTM_HeLa_CUDC101_4h_R1 2 LGSPLAVDEALR 12 0 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 LGS(1)PLAVDEALR;LGS(1)PLAVDEALR ; 116.71 0.0040668 28956000 2877 2696.9 2368.9 2386.92 3003.9 2671.6 2634.7 2017.58 2909.54 3090.1 TRUE FALSE FALSE 2539.762421 2779.988292 2496.9699 2484.268915 2782.308282 2620.643681 2736.321262 2247.253152 2789.60753 3071.719948 0.826820955 0.90502661 0.812889828 0.808755016 0.905781884 0.853151891 0.890810786 0.731594413 0.908158158 1 11.58483097 -9.363011811 0.677831997 1.022092483 0.842687178 0.334341586 0.057279254 0.555364994 0.366286811 0.060333377 0.009957053 4.33E-10 9.363011811 -0.179405304 KREEGS(ph)DIEDEDMEELLNDTR ddPTM_HeLa_CUDC101_4h_R1 5 KREEGSDIEDEDMEELLNDTR 21 2 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 0 KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR ;;;; 131.97 3.56E-07 142451800 10833.6 9827.6 9682.7 8970.1 9835.4 9890 9837.5 9475.8 10851.2 11062.9 TRUE FALSE FALSE 9563.701831 10130.37671 10206.17605 9335.93945 9109.862137 9701.364728 10216.93567 10554.48677 10403.90894 10997.09738 0.86965692 0.921186415 0.928079083 0.848945783 0.828387876 0.882175032 0.929057488 0.959752051 0.946059545 1 13.42483516 -9.362846346 0.899598407 1.005399032 0.892691162 0.326410799 0.041414488 0.453227714 0.604617911 0.035885098 0.007713598 4.34E-10 9.362846346 -0.11270787 NNTAAETEDDES(ph)DGEDRGGGTSGSLR ddPTM_HeLa_CUDC101_4h_R1 2 NNTAAETEDDESDGEDRGGGTSGSLR 26 1 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein 1 0 NNT(0.002)AAET(0.014)EDDES(0.967)DGEDRGGGT(0.006)S(0.006)GS(0.006)LR;NNTAAET(0.001)EDDES(0.999)DGEDRGGGTSGSLR ; 98.085 2.22E-06 42200000 997.29 871.79 884.3 947.64 894.19 995.81 787.98 934.34 1093.71 1055.16 TRUE FALSE FALSE 880.389178 898.6488166 932.1079329 986.2888552 828.2273852 976.8165834 818.3726526 1040.701489 1048.626811 1048.883861 0.839358112 0.85676675 0.888666484 0.940322272 0.789627351 0.931291461 0.780231904 0.992198972 0.999754929 1 10.03463923 -9.362619494 1.023688226 1.001912751 0.872316446 0.3740598 0.062908752 0.430475327 0.788343914 0.041339966 0.010117789 4.34E-10 9.362619494 -0.129596305 VDS(ph)PSHGLVTSSLCIPS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 VDSPSHGLVTSSLCIPSPAR 20 0 Q9UER7-3;Q9UER7 Q9UER7-3 DAXX Death domain-associated protein 6 2 0 VDS(0.697)PS(0.303)HGLVTSSLCIPS(0.999)PAR;VDS(0.999)PS(0.001)HGLVTSSLCIPS(1)PAR ; 196.95 2.74E-16 30364000 2309.93 1895.93 1645.61 1474.09 2345.39 1986.78 2267 1583.63 2388.9 1185.15 TRUE FALSE FALSE 2039.163507 1954.341356 1734.576654 1534.209762 2172.375252 1948.885482 2354.438949 1763.904038 2290.428531 1178.100675 1.730890704 1.658891636 1.472350106 1.302273901 1.843964016 1.654260559 1.998504032 1.49724389 1.94417046 1 10.20224712 -9.362602428 0.699165214 0.913804487 1.659002241 0 0.348097884 0.503994465 0.358923582 0.231527858 0.03924535 4.34E-10 9.362602428 0.745197754 DKWLAPDGLIFPDR ddPTM_HeLa_CUDC101_4h_R1 2 DKWLAPDGLIFPDR 14 1 E9PNR9;E9PQ98;E9PIX6;H0YDE4;E9PKG1;Q99873-2;Q99873-3;Q99873 E9PNR9 PRMT1 Protein arginine N-methyltransferase 1 0 0 ; ; 133.87 0.00088987 51014000 7297 6370.8 6505.9 6008.5 7231.1 6944.9 6385 6495.6 7462.7 7322.5 FALSE FALSE TRUE 6441.656722 6567.076797 6857.628633 6253.552601 6697.676159 6812.437603 6631.271589 7235.032848 7155.084347 7278.945444 0.88497115 0.902201678 0.942118427 0.859128929 0.92014375 0.935909969 0.911020922 0.993967176 0.982983648 1 12.82951374 -9.425203467 1.137841766 1.000297553 0.914466919 0.410138443 0.034480776 0.347347578 0.799923723 0.02362042 0.005859733 3.76E-10 9.425203467 -0.085830635 DLADELALVDVIEDK ddPTM_HeLa_CUDC101_4h_R1 4 DLADELALVDVIEDK 15 0 P00338-3;P00338;P00338-4;P00338-2;P00338-5;F5GYU2;F5GXY2;F5GXH2;F5H6W8;F5H5J4;F5GZQ4 P00338-3 LDHA L-lactate dehydrogenase A chain 0 0 ;;; ;;; 267.93 1.90E-70 4086800000 19123.3 16353.8 16806.5 14778.75 18573.1 17164.1 16476.3 13536.79 18904.2 20648.2 FALSE FALSE TRUE 16881.69576 16857.64119 17715.11023 15381.4913 17202.99942 16836.72339 17111.79641 15077.76346 18124.96087 20525.38359 0.822478941 0.821306999 0.863083028 0.749388738 0.838132907 0.82028788 0.833689482 0.734591068 0.883051018 1 14.32512156 -9.485917768 0.406712643 1.075676404 0.799669613 0.451389526 0.051465663 0.815156339 0.155479529 0.098787212 0.011295637 3.27E-10 9.485917768 -0.276006792 DLAEDAPWK ddPTM_HeLa_CUDC101_4h_R1 1 DLAEDAPWK 9 0 P21333-2;P21333;Q60FE5;A0A087WWY3;F8WE98;O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;O75369-5;O75369-4;Q14315-2;Q14315 P21333-2;O75369-8;Q14315-2 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C 0 0 117.89 0.034948 11267000 8565.2 6066.6 5791.5 5736.3 6086.7 6108.6 6119.4 5088.5 6501.5 8370.3 FALSE FALSE TRUE 7561.20024 6253.504755 6104.606008 5970.251108 5637.696267 5992.088633 6355.427308 5667.754272 6233.505418 8320.513083 0.908742065 0.751576819 0.733681439 0.717534009 0.67756594 0.720158549 0.76382637 0.681178458 0.749173201 1 13.02245678 -7.360150144 1.213087708 0.972469699 0.710931887 0.396860513 0.076072619 0.072698063 0.208712142 0.00673305 0.007651217 4.36E-08 7.360150144 -0.261537812 DLAEDAPWK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DLAEDAPWKK 10 1 P21333-2;P21333;Q60FE5;A0A087WWY3;F8WE98;O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;O75369-5;O75369-4;Q14315-2;Q14315 P21333-2;O75369-8;Q14315-2 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C 0 1 ; DLAEDAPWK(1)K;DLAEDAPWK(1)K 166.19 0.0009275 9728100 9022.2 3926.4 3495.8 2422 6592.2 7049.2 7765.8 5933.3 6983.2 5746 FALSE TRUE FALSE 7964.631393 4047.36773 3684.793522 2520.779629 6105.90654 6914.748255 8065.329507 6608.722889 6695.34954 5711.822536 1.394411563 0.708594797 0.645116948 0.441326672 1.068994441 1.210602782 1.412041333 1.157025248 1.17219145 1 12.47973544 -7.266431612 24.94650381 1.186249898 0.950353419 0.127406913 0.287509508 750.5723589 3750652.557 0.057412083 0.066722512 5.41E-08 7.266431612 -0.235896479 DLAEITTLDR ddPTM_HeLa_CUDC101_4h_R1 1 DLAEITTLDR 10 0 Q9BS26 Q9BS26 ERP44 Endoplasmic reticulum resident protein 44 0 0 128.6 0.00072349 0 1155.2 1174.2 1024.1 1071.9 1276.2 1134.1 786.51 979.32 1050.3 1245.4 FALSE FALSE TRUE 1019.789207 1210.37571 1079.465944 1115.616715 1182.057269 1112.468932 816.8459542 1090.80183 1007.006189 1237.992305 0.823744383 0.977692434 0.871948831 0.901149959 0.954817945 0.898607307 0.659815049 0.881105501 0.813418779 1 10.27378663 -13.52287875 0.282043997 2.042403373 0.85320311 0 0.100709764 48.8323708 0.659213299 28.76918838 0.039633029 3.00E-14 13.52287875 -1.189200263 DLAFTLEER ddPTM_HeLa_CUDC101_4h_R1 1 DLAFTLEER 9 0 P48163 P48163 ME1 NADP-dependent malic enzyme 0 0 131.62 0.016546 11911000 2761.9 2647.5 2405.2 2222.2 2629.1 2580.1 2305.6 1937.4 2424.4 2487.7 FALSE FALSE TRUE 2438.154269 2729.066337 2535.232387 2312.830921 2435.156531 2530.888891 2394.527764 2157.945785 2324.465206 2472.90305 0.985948183 1.103588083 1.025204926 0.935269549 0.984735949 1.02344849 0.968306365 0.87263663 0.939974257 1 11.27198996 -4.307346795 2.965642131 1.000211405 0.857907022 0.418354809 0.044975158 0.232256269 3.084751166 0.005751627 0.07371491 4.93E-05 4.307346795 -0.142304382 ESDTKNEVNGTSEDIKSEGDTQS(ph)N ddPTM_HeLa_CUDC101_4h_R1 5 ESDTKNEVNGTSEDIKSEGDTQSN 24 2 O95232 O95232 LUC7L3 Luc7-like protein 3 1 0 ESDTKNEVNGTSEDIKS(0.032)EGDT(0.076)QS(0.891)N;ESDTKNEVNGTSEDIKS(0.018)EGDT(0.061)QS(0.92)N;ESDTKNEVNGTSEDIKS(0.001)EGDT(0.015)QS(0.983)N;ESDTKNEVNGTS(0.003)EDIKS(0.012)EGDT(0.065)QS(0.919)N;ESDTKNEVNGT(0.002)S(0.008)EDIKS(0.008)EGDT(0.05)QS(0.933)N ;;;; 107.75 8.33E-07 514939000 10835.4 9969 9569.2 9006.2 11034.3 10781.4 10047.7 9461.2 10938.1 12277.5 TRUE FALSE FALSE 9565.290837 10276.13307 10086.5399 9373.511764 10220.32167 10575.76276 10435.24315 10538.22476 10487.22689 12204.47288 0.783752885 0.841997288 0.82646256 0.76803905 0.83742426 0.866548097 0.855034318 0.86347234 0.859293719 1 13.57512237 -9.362169061 1.009144204 1.003191273 0.827511286 0.220600802 0.052191307 0.199535363 0.353038086 0.025830651 0.006236253 4.34E-10 9.362169061 -0.175679987 DLAQDEAVWLER ddPTM_HeLa_CUDC101_4h_R1 1 DLAQDEAVWLER 12 0 A2IDA3;P29372-5;P29372-4;P29372-2;P29372 A2IDA3 MPG DNA-3-methyladenine glycosylase 0 0 137.16 0.007411 2378600 1066.9 972.67 890.86 1160.8 938.71 936.22 826.75 867.68 1040.6 868.5 FALSE FALSE TRUE 941.8395993 1002.63681 939.0225863 1208.142441 869.4632335 918.3631633 858.6380244 966.4531839 997.7060276 863.3341234 1.090932901 1.161354315 1.087669954 1.399391509 1.007099349 1.063740142 0.994560508 1.119442818 1.15564299 1 9.753775202 -8.543390869 0.903233793 1.009274615 1.115690296 0 0.115895042 0.77566089 1.29475705 0.042359118 0.022270556 2.86E-09 8.543390869 0.106415681 LGASEAAAFDS(ph)DESEAVGATR ddPTM_HeLa_CUDC101_4h_R1 3 LGASEAAAFDSDESEAVGATR 21 0 H0YBE8;H3BLZ3;Q8IX03;Q8IX03-2 H0YBE8 WWC1 Protein KIBRA 1 0 LGASEAAAFDS(0.935)DES(0.064)EAVGAT(0.001)R;LGASEAAAFDS(0.998)DES(0.002)EAVGATR;LGASEAAAFDS(0.86)DES(0.14)EAVGATR ;; 240.44 3.07E-46 32442800 4482.4 3702.86 3449.24 3487.95 4275.1 3544.44 3590.51 3912 3694.37 3212.11 TRUE FALSE FALSE 3956.979867 3816.940728 3635.716348 3630.203677 3959.73439 3476.835712 3728.997173 4357.326267 3542.086505 3193.004227 1.239265465 1.195407352 1.138650653 1.136924169 1.240128139 1.088891672 1.167864778 1.364647823 1.109327221 1 11.64069875 -9.361988963 0.971547139 0.994451255 1.192959345 0.307400267 0.078712182 0.384924926 0.620929275 0.055464037 0.01289396 4.35E-10 9.361988963 0.19850809 DLDAPDDVDFF ddPTM_HeLa_CUDC101_4h_R1 3 DLDAPDDVDFF 11 0 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;H7C3A1 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 0 0 ;; ;; 155.01 0.0014237 155285300 22148.5 20127.4 17979.5 17064.7 21538.2 19600.6 19099.4 17854.3 21549.6 16540.4 FALSE FALSE TRUE 19552.2864 20747.50134 18951.52616 17760.67223 19949.3699 19226.75121 19836.07026 19886.76134 20661.31637 16442.01697 1.189165931 1.26185865 1.152627819 1.080200335 1.213316465 1.169366949 1.206425604 1.209508626 1.256616899 1 14.00509967 -9.131596461 0.775149911 0.992939668 1.184716177 0 0.09093418 0.323408327 0.333787293 0.037796767 0.009638924 7.39E-10 9.131596461 0.191776509 DLDDFQSWLSR ddPTM_HeLa_CUDC101_4h_R1 2 DLDDFQSWLSR 11 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ; ; 220.1 1.70E-31 134787000 3557.4 2399.8 3045.8 2649.2 2935.9 2880.1 2917.6 2770.6 3126.8 2999.8 FALSE FALSE TRUE 3140.406965 2473.734994 3210.465161 2757.245827 2719.324506 2825.166891 3030.132809 3085.993905 2997.911981 2981.957056 1.053136214 0.829567612 1.076630247 0.924643036 0.911926113 0.947420381 1.01615575 1.034888782 1.005350488 1 11.54204377 DLDDIEDENEQLKQENK ddPTM_HeLa_CUDC101_4h_R1 2 DLDDIEDENEQLKQENK 17 1 Q96IZ0;H0YHP5 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein 0 0 ; ; 115.1 0.00076217 44462000 2710.1 2632.5 2788.4 2254.5 2517.4 2185.8 2516.3 2430 2773.3 2991.3 FALSE FALSE TRUE 2392.426186 2713.604205 2939.149338 2346.448255 2331.696417 2144.109507 2613.354534 2706.621378 2658.9834 2973.507615 0.804580481 0.912593663 0.988445203 0.789117957 0.784156868 0.721070797 0.878879382 0.910245316 0.894224514 1 11.53795005 -6.239827598 24.35862459 0.911321797 0.813028771 0.347918081 0.070105947 706.7619516 796590.7085 0.013677736 0.022666507 5.76E-07 6.239827598 -0.098293026 DLDEDANGITDEGK ddPTM_HeLa_CUDC101_4h_R1 2 DLDEDANGITDEGK 14 0 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 0 0 ; ; 240.59 2.07E-53 3452100 3083.3 2617 2090.66 2090.5 1727.34 2340.55 2098.86 1779.25 2320.1 2423.8 FALSE FALSE TRUE 2721.880248 2697.626668 2203.687404 2175.759626 1599.91757 2295.907908 2179.813733 1981.792628 2224.464496 2409.38313 1.129700052 1.11963375 0.914627224 0.903035968 0.66403618 0.952902791 0.904718601 0.82253113 0.923250631 1 11.23444811 -6.588133674 3.569019353 1.067156045 0.851199938 0.487887443 0.091945781 0.12607993 3.26457022 0.013918386 0.020300148 2.58E-07 6.588133674 -0.215956108 DLDEDANGITDEGKEINEK ddPTM_HeLa_CUDC101_4h_R1 2 DLDEDANGITDEGKEINEK 19 1 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 0 0 ; ; 163.56 1.25E-05 16863900 3503.7 3028.9 2806.89 2780.71 3910 3301.4 3332.5 3089.2 3934.8 3302.97 FALSE FALSE TRUE 3093.001597 3122.216819 2958.638964 2894.119373 3621.56709 3238.431296 3461.035641 3440.862041 3772.605879 3283.323788 0.942033682 0.950931745 0.901110934 0.88146024 1.103018564 0.98632712 1.054125595 1.047981333 1.149020359 1 11.68094131 -5.754021098 24.99973638 0.958524118 1.043915027 0.196240072 0.073826941 127.0441796 428137.2795 0.006956832 0.01369536 1.76E-06 5.754021098 0.085390909 ADTS(ph)QEICSPR ddPTM_HeLa_CUDC101_4h_R1 1 ADTSQEICSPR 11 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 ADT(0.041)S(0.959)QEICSPR 115.12 0.00061879 0 2557.7 2122.1 2269.3 2200.3 2076.5 2774.3 2132.3 2146.3 2319.6 1530.3 TRUE FALSE FALSE 2257.890283 2187.479386 2391.985222 2290.037745 1923.320732 2721.38485 2214.543525 2390.626116 2223.985106 1521.197708 1.484284569 1.437998082 1.572435463 1.505417562 1.264346326 1.788975119 1.455789418 1.571542019 1.461996094 1 10.57099195 -9.361947676 0.447796852 0.841866607 1.536952095 0.064695765 0.190011964 0.804831442 0.202289101 0.260015494 0.034626899 4.35E-10 9.361947676 0.695085488 DLDEDELLGNLSETELK ddPTM_HeLa_CUDC101_4h_R1 2 DLDEDELLGNLSETELK 17 0 Q9NYL9;H0YNU8 Q9NYL9 TMOD3 Tropomodulin-3 0 0 ; ; 297.03 3.68E-122 14369200 5631 4847.6 4213.1 3826.3 4411.8 4087.4 4133.1 4173.1 4515.7 4929.1 FALSE FALSE TRUE 4970.942716 4996.94881 4440.87293 3982.353053 4086.350304 4009.439655 4292.515051 4648.148836 4329.560935 4899.781494 1.014523346 1.019830949 0.906341014 0.812761356 0.833986232 0.818289481 0.876062546 0.948644106 0.883623268 1 12.2585017 -6.624689934 3.851402801 1.007987399 0.855527545 0.505099185 0.053607141 0.073573814 2.078785501 0.005918352 0.008510375 2.37E-07 6.624689934 -0.152459854 ALDVSAS(ph)DDEIAR ddPTM_HeLa_CUDC101_4h_R1 2 ALDVSASDDEIAR 13 0 C9JLK2;H7C393;H7C1U0;C9JIF9;P13798 C9JLK2 APEH Acylamino-acid-releasing enzyme 1 0 ALDVS(0.352)AS(0.648)DDEIAR;ALDVS(0.341)AS(0.659)DDEIAR ; 212.1 7.32E-24 98760000 7782.2 5876.6 4157.9 3987.9 3646.6 2051.93 2109.58 1823.9 4188.7 4944 TRUE FALSE FALSE 6869.982313 6057.651081 4382.688651 4150.543799 3377.597583 2012.792854 2190.947207 2031.525404 4016.040013 4914.592868 1.397874147 1.232584518 0.891770441 0.844534616 0.687258879 0.409554343 0.445804417 0.413365961 0.81716637 1 12.26285619 -5.94473771 1.099903398 1.192419174 0.412657035 0.739964515 0.16392891 0.158052628 0.376868521 0.027992097 0.070846622 1.14E-06 5.94473771 -0.77976214 down T(ph)SPKPAVVETVTTAKPQQIQALMDEVTK ddPTM_HeLa_CUDC101_4h_R1 4 TSPKPAVVETVTTAKPQQIQALMDEVTK 28 2 P56192;H0YI94;H0YIP0 P56192 MARS "Methionine--tRNA ligase, cytoplasmic" 1 0 T(0.563)S(0.429)PKPAVVET(0.006)VT(0.001)T(0.001)AKPQQIQALMDEVTK;T(0.564)S(0.43)PKPAVVET(0.002)VT(0.002)T(0.002)AKPQQIQALMDEVTK;T(0.5)S(0.5)PKPAVVETVTTAKPQQIQALMDEVTK;T(0.5)S(0.5)PKPAVVETVTTAKPQQIQALMDEVTK ;;; 131.33 2.11E-16 710737000 8753.1 7715.1 7075.5 8171.4 8681 8118.8 7290 7299.3 7978.5 8640.4 TRUE FALSE FALSE 7727.074887 7952.793086 7458.022932 8504.665012 8040.619925 7963.947417 7571.177742 8130.222807 7649.622853 8589.006517 0.89964711 0.925927006 0.868321955 0.990180296 0.9361525 0.927225681 0.881496332 0.946584776 0.890629532 1 13.06827555 -9.361812694 1.029612066 1.001052513 0.920341226 0 0.046633018 0.387163669 0.719212993 0.023197278 0.005716893 4.35E-10 9.361812694 -0.080711287 DLDEEIFDDDDFYHQLLR ddPTM_HeLa_CUDC101_4h_R1 4 DLDEEIFDDDDFYHQLLR 18 0 Q9NY61;A0A087WTH8;A0A087WWS8 Q9NY61 AATF Protein AATF 0 0 ;;; ;;; 226.06 2.66E-33 61114900 14696.9 12001.6 11248.1 11061.1 12424.9 12536 12428.5 11278.1 13479.6 10282.2 FALSE FALSE TRUE 12974.15166 12371.35507 11856.20631 11512.21947 11508.33988 12296.89669 12907.87141 12561.95332 12923.96518 10221.04102 1.269357166 1.21038112 1.159980308 1.126325533 1.125945964 1.203096306 1.262872479 1.229028755 1.264447052 1 13.31925452 -9.424719333 1.113265326 0.998217628 1.201477298 0 0.093532425 0.251984751 0.550783021 0.040261241 0.009778516 3.76E-10 9.424719333 0.203259669 DLDEMDDDDDDDDVGDHDDDHPGMEVVLHEDK ddPTM_HeLa_CUDC101_4h_R1 4 DLDEMDDDDDDDDVGDHDDDHPGMEVVLHEDK 32 0 Q15029-3;Q15029;K7EIV5;K7EIT3 Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 0 ;;; ;;; 126.42 1.83E-15 192956000 15180.2 13831.4 14113.4 15541.2 18788.5 17599.3 16789.9 11719.1 18775.9 25893.2 FALSE FALSE TRUE 13400.79997 14257.52904 14876.41309 16175.03731 17402.50979 17263.62267 17437.49207 13053.15497 18001.94945 25739.18609 0.520638062 0.553923072 0.577967502 0.628420699 0.67610956 0.67071362 0.677468666 0.507131613 0.699398551 1 14.65167881 -9.314687383 0.9721967 1.006730199 0.602663612 0.348747331 0.107916049 0.175347316 0.289098023 0.050454491 0.012561329 4.85E-10 9.314687383 -0.404066587 DLDEMDDDDDDDDVGDHDDDHPGMEVVLHEDKK ddPTM_HeLa_CUDC101_4h_R1 4 DLDEMDDDDDDDDVGDHDDDHPGMEVVLHEDKK 33 1 Q15029-3;Q15029;K7EIV5;K7EIT3 Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 0 ;;; ;;; 105.75 2.21E-14 607039900 15033.7 12861.07 13309.12 13048.76 15163.09 13333.8 13209.11 10895.21 14512.54 12750.16 FALSE FALSE TRUE 13271.47248 13257.30432 14028.65129 13580.94483 14044.53906 13079.47998 13718.5898 12135.47667 13914.32696 12674.32148 1.047115027 1.045997164 1.106856198 1.071532299 1.108109738 1.031966879 1.082392443 0.957485313 1.097836044 1 13.62962089 -8.522374413 0.770494725 1.003374419 1.060932601 0 0.050433362 0.633838898 0.775206849 0.018173784 0.008729601 3.00E-09 8.522374413 0.057558182 LTPVRPAAAS(ph)PIVSGAR ddPTM_HeLa_CUDC101_4h_R1 2 LTPVRPAAASPIVSGAR 17 1 I3VM54;Q9Y2K7-3;Q9Y2K7;Q9Y2K7-4;Q9Y2K7-5;Q9Y2K7-2 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 LTPVRPAAAS(0.914)PIVS(0.086)GAR;LTPVRPAAAS(0.983)PIVS(0.017)GAR ; 140.68 0.000991 126997000 3755.1 2965.3 3023.2 3332.4 3377.4 3255.8 3257.7 2820.3 2753.5 2683.1 TRUE FALSE FALSE 3314.93287 3056.657378 3186.643337 3468.309676 3128.255931 3193.70104 3383.35058 3141.351552 2639.999565 2667.140802 1.242878842 1.14604275 1.194778819 1.300384919 1.172887434 1.197424987 1.268530922 1.177797419 0.989823845 1 11.38107827 -9.361720604 0.707615868 0.972789102 1.217088426 0.790420017 0.044710734 0.344958717 0.253215668 0.052298048 0.008968833 4.35E-10 9.361720604 0.244299324 DLDIIDNYDYSHTVK ddPTM_HeLa_CUDC101_4h_R1 2 DLDIIDNYDYSHTVK 15 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 0 ; ; 165.89 1.84E-05 65182000 8574.9 8131.4 8215.7 7809.8 9486.8 8992.4 8519.1 7465.8 9535.8 8558.9 FALSE FALSE TRUE 7569.763221 8381.918796 8659.865593 8128.317401 8786.977664 8820.884952 8847.684541 8315.676494 9142.730288 8507.991282 0.889723904 0.985181874 1.017850784 0.955374439 1.032791099 1.036776445 1.039926376 0.977395982 1.074605037 1 13.05460284 -7.009105895 19.41688776 0.947373984 1.010343736 0 0.053406 22.48113308 47939.91406 0.007714364 0.009824718 9.79E-08 7.009105895 0.062969752 DLDKELDEYMHGGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 DLDKELDEYMHGGKK 15 2 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 0 1 DLDK(0.001)ELDEYMHGGK(0.999)K 49.31 0.032016 910110 616.8 639.78 587.64 522.86 508.64 407.95 540.94 497.4 719.48 905.41 FALSE TRUE FALSE 544.499639 659.4908635 619.4095959 544.1844908 471.1186406 400.1690334 561.804237 554.0220054 689.8227299 900.0245811 0.604983075 0.732747613 0.688214088 0.60463292 0.52345086 0.444620116 0.624209881 0.615563194 0.766448766 1 9.813820594 -10.93150232 0.262952981 1.595535314 0.545330156 0.504910771 0.101331717 3.775445849 0.163759091 1.348217696 0.047002085 1.17E-11 10.93150232 -1.050205157 (ac)MDVAES(ph)PERDPHSPEDEEQPQGLSDDDILR ddPTM_HeLa_CUDC101_4h_R1 2 MDVAESPERDPHSPEDEEQPQGLSDDDILR 30 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 MDVAES(0.513)PERDPHS(0.487)PEDEEQPQGLSDDDILR;MDVAES(0.651)PERDPHS(0.348)PEDEEQPQGLS(0.001)DDDILR ; 42.355 0.0005001 33778000 706.86 711.289 661.46 521.79 730.083 702.808 618.747 581.58 381.75 927 TRUE FALSE FALSE 624.0029423 733.202971 697.2205284 543.0708516 676.2262316 689.4031084 642.6122791 647.7847164 366.0141034 921.4861628 0.677170171 0.795674423 0.756626151 0.589342384 0.733843067 0.748142659 0.697365088 0.702978235 0.397199782 1 9.847818692 -9.361639026 0.686705757 1.039558533 0.708075224 0 0.195886601 0.33053186 0.225287987 0.066830484 0.011171814 4.35E-10 9.361639026 -0.331483309 S(ph)PQLSDFGLER ddPTM_HeLa_CUDC101_4h_R1 2 SPQLSDFGLER 11 0 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 0 S(1)PQLSDFGLER;S(1)PQLSDFGLER ; 143.64 0.0012082 76456000 1845.74 1715.99 1462.69 1488.83 1601.54 1628.1 1559.53 1393.17 1606.78 1489.05 TRUE FALSE FALSE 1629.385155 1768.857618 1541.767446 1549.550923 1483.397585 1597.046705 1619.681595 1551.762841 1540.547848 1480.193064 1.100792318 1.195018177 1.041598885 1.046857305 1.002164934 1.078944864 1.094236714 1.04835165 1.04077494 1 10.53156965 -9.361525447 1.172611058 1.001417879 1.077671344 0.150079293 0.049773775 0.535207724 1.352880417 0.03162478 0.008853268 4.35E-10 9.361525447 0.076253465 DLDSLHR ddPTM_HeLa_CUDC101_4h_R1 4 DLDSLHR 7 0 Q8NBS9-2;Q8NBS9 Q8NBS9-2 TXNDC5 Thioredoxin domain-containing protein 5 0 0 ;;; ;;; 120.62 0.010969 83932000 40176.9 25719.9 26720.3 26003 43463.3 36052.5 35349.4 35951.6 36985.5 32561.9 FALSE FALSE TRUE 35467.42469 26512.29963 28164.88024 27063.51473 40257.09895 35364.85863 36712.8382 40044.18482 35460.94204 32368.22037 1.095748369 0.819084254 0.870139906 0.836113769 1.243722963 1.092579642 1.134224798 1.237145087 1.095548091 1 14.98229043 -5.741299708 24.98639232 0.999764737 1.16784442 0.48864622 0.105816986 225.9936742 280378.7206 0.017177531 0.034321012 1.81E-06 5.741299708 0.168079683 DLDVVRR ddPTM_HeLa_CUDC101_4h_R1 1 DLDVVRR 7 1 S4R338;Q9BV86 S4R338 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed" 0 0 81.784 0.0031604 0 2359.6 2807.6 2650.8 2576.2 3378.8 2573.8 2990.7 3589.1 2858.9 1624 FALSE FALSE TRUE 2083.011265 2894.098828 2794.110266 2681.268571 3129.552656 2524.709053 3106.052301 3997.668636 2741.054932 1614.340376 1.290317269 1.79274388 1.73080616 1.660906592 1.938595294 1.563926103 1.924038045 2.476348047 1.697941136 1 10.65672908 -1 0.100056082 0.46409233 5.610998537 0.36342105 0.298179894 38.40697715 0.274001746 1.64381661 27.2668646 0.1 1 5.146906206 DLEAEHVEVEDTTLNR ddPTM_HeLa_CUDC101_4h_R1 2 DLEAEHVEVEDTTLNR 16 0 H3BV85;H3BTW0;A0A0B4J295;A0A087WZT3;H3BVE0;Q9H3K6-2;Q9H3K6 H3BV85 BOLA2B;BOLA2 BolA-like protein 2 0 0 ; ; 144.4 0.00024628 59633000 9548 9569.6 9532.7 8695.3 10898.5 9702.5 9232 9040.6 10147 9516.1 FALSE FALSE TRUE 8428.797914 9864.428033 10048.0666 9049.931918 10094.53937 9517.440978 9588.081333 10069.74536 9728.736365 9459.497814 0.891040738 1.042806735 1.062219876 0.956703209 1.067132692 1.006125395 1.01359306 1.064511622 1.028462246 1 13.20754788 -7.239958756 24.49819988 0.948547013 1.028655851 0.184272671 0.047270939 493.9058009 563289.4053 0.008151253 0.009977845 5.75E-08 7.239958756 0.080108838 DLEALMFDR ddPTM_HeLa_CUDC101_4h_R1 2 DLEALMFDR 9 0 A0A3B3ITK7;P36871;P36871-2;P36871-3 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 0 0 ; ; 131.5 0.01663 12886200 3061.27 2827.6 2157.72 2369.67 2980.7 2815.6 2635 2570.13 2648.4 2342.1 FALSE FALSE TRUE 2702.432571 2914.715004 2274.37287 2466.315385 2760.819699 2761.897121 2736.632833 2862.70321 2539.231831 2328.169085 1.160754427 1.251934416 0.976893338 1.059336885 1.185832987 1.186295763 1.175444194 1.229594203 1.090656107 1 11.18498012 -13.52287875 0.207591045 0.243933842 1.179409853 0.197338714 0.080602056 42.17495767 0.521093418 12.92845398 0.074433308 3.00E-14 13.52287875 0.935476011 ILEGPQQSLSGSPLQPIPAS(ph)PPPQIPPGLRPR ddPTM_HeLa_CUDC101_4h_R1 2 ILEGPQQSLSGSPLQPIPASPPPQIPPGLRPR 32 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 ILEGPQQSLSGSPLQPIPAS(1)PPPQIPPGLRPR;ILEGPQQSLSGSPLQPIPAS(1)PPPQIPPGLRPR ; 95.47 4.83E-10 62302000 573.6 621.19 619.18 551.57 742.97 554.15 531.34 354.3 641.19 987.14 TRUE FALSE FALSE 506.3634775 640.3281276 652.6547437 574.0654087 688.1625833 543.580512 551.8339618 394.6320799 614.7598768 981.2684474 0.516029511 0.652551429 0.665113349 0.585023813 0.701299002 0.553956986 0.562367987 0.40216526 0.626495103 1 9.938504061 -9.361498433 0.773842691 1.040409021 0.580472741 0.111310428 0.14010877 0.295028356 0.270611125 0.088457719 0.016455824 4.35E-10 9.361498433 -0.45993628 DLEDGEVPQHAGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DLEDGEVPQHAGKK 14 1 Q15059;Q15059-2 Q15059 BRD3 Bromodomain-containing protein 3 0 1 ; DLEDGEVPQHAGK(1)K;DLEDGEVPQHAGK(1)K 132.97 0.0021342 12228000 8569.1 7758 7573.1 6361.7 8357.6 7814.9 7190.7 8075.4 6638.8 7343.6 FALSE TRUE FALSE 7564.643088 7997.014785 7982.524693 6621.157624 7741.076499 7665.843803 7468.047708 8994.670894 6365.145854 7299.919941 1.036263843 1.095493492 1.093508526 0.907017841 1.060433068 1.050127106 1.023031454 1.232160211 0.871947351 1 12.83366493 -4.260954093 24.02721567 1.025802725 1.232160315 0.453547688 0.070566306 12.12452581 599981.4788 0.00691652 0.054847398 5.48E-05 4.260954093 0.20635759 DLEDSLAR ddPTM_HeLa_CUDC101_4h_R1 2 DLEDSLAR 8 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 157.33 0.0077397 93653000 16366.6 13288.9 13664.6 13235.3 13531 12854.1 12481.8 11753.7 14828.2 13894.1 FALSE FALSE TRUE 14448.13196 13698.31526 14403.34961 13775.09274 12532.84509 12608.92946 12963.22721 13091.6937 14216.97532 13811.45728 1.046097575 0.991808104 1.042855169 0.997367075 0.907423803 0.91293259 0.938585042 0.947886486 1.029360989 1 13.75357793 -5.882408013 4.728351441 1.020988202 0.926893768 0.845937676 0.019264309 0.068525451 2.551620856 0.003337467 0.006185248 1.31E-06 5.882408013 -0.094094434 DLEEDHACIPIK ddPTM_HeLa_CUDC101_4h_R1 1 DLEEDHACIPIK 12 0 P13639 P13639 EEF2 Elongation factor 2 0 0 92.247 0.001177 0 5112.2 4027 3944.3 3847.7 4273.9 3820.1 3224.1 3325 4439.1 1479.5 FALSE FALSE TRUE 4512.955666 4151.067097 4157.540789 4004.625837 3958.622912 3747.237957 3348.454617 3703.50456 4256.118419 1470.699868 3.068576916 2.822511368 2.826913144 2.72293887 2.691659255 2.547928397 2.276776309 2.518191944 2.893940845 1 10.52228714 -9.324685302 0.982000489 0.971736729 2.699794142 0 0.610419218 0.150181837 0.252646774 0.186284562 0.04618612 4.73E-10 9.324685302 1.728057412 DLEEDHACIPIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DLEEDHACIPIKK 13 1 P13639 P13639 EEF2 Elongation factor 2 0 1 ; DLEEDHACIPIK(1)K;DLEEDHACIPIK(1)K 122.18 0.002459 22579000 28860 12441.2 11666.9 9957.8 26069 21842 26037 20393.3 23584 4078.8 FALSE TRUE FALSE 25477.07455 12824.49863 12297.6479 10363.92213 24145.94181 21425.40024 27041.25581 22714.79084 22611.85754 4054.539116 6.283593232 3.162997879 3.033056915 2.556128287 5.955286437 5.2842998 6.669378451 5.602311431 5.576924254 1 11.98532222 -5.749384971 24.56467306 3.428276735 5.891965696 0.371552114 1.439263779 195.1406128 397657.3489 0.287914134 0.572169556 1.78E-06 5.749384971 2.463688961 DLEEDHACIPIKK ddPTM_HeLa_CUDC101_4h_R1 1 DLEEDHACIPIKK 13 1 P13639 P13639 EEF2 Elongation factor 2 0 0 69.261 0.036846 48618000 18992 15240 16799 16249 16076 14865 14800 15804 16552 4072.9 FALSE FALSE TRUE 16765.78655 15709.52634 17707.20475 16911.70445 14890.10551 14581.47489 15370.84096 17603.06348 15869.71955 4048.67421 4.141055981 3.880165586 4.373581038 4.177096891 3.677773201 3.601543156 3.796512182 4.347858723 3.919732419 1 11.98323384 -9.192239752 0.733566616 0.79779336 4.010461347 0.003260414 0.930418958 0.142931157 0.125624355 0.277945585 0.062260197 6.42E-10 9.192239752 3.212667987 DLEEWNQR ddPTM_HeLa_CUDC101_4h_R1 2 DLEEWNQR 8 0 P09497-2;P09497 P09497-2 CLTB Clathrin light chain B 0 0 ; ; 151.04 0.014424 29537000 5404.7 4823.5 4652.7 4586.9 4972.9 4696.7 4682.4 4923.8 4567.5 4672.8 FALSE FALSE TRUE 4771.169259 4972.106318 4904.239036 4773.973608 4606.059074 4607.118273 4863.001736 5484.305489 4379.225717 4645.005978 1.027161059 1.070419789 1.055808983 1.027764793 0.991615317 0.991843346 1.046931212 1.180688575 0.942781503 1 12.18146474 -4.281010568 3.387479148 1.018671497 1.198291782 0.67697545 0.034393737 0.105993836 2.047387123 0.003878519 0.047722889 5.24E-05 4.281010568 0.179620285 DLEFTIYDDDDVSPFLEGLEERPQR ddPTM_HeLa_CUDC101_4h_R1 2 DLEFTIYDDDDVSPFLEGLEERPQR 25 1 P25786;P25786-2;F5GX11 P25786 PSMA1 Proteasome subunit alpha type-1 0 0 ; ; 162.44 3.65E-11 72595000 1382.99 1083 859.05 952.91 1257.87 1195.28 1176 1009.6 1320.23 1311.14 FALSE FALSE TRUE 1220.878009 1116.365946 905.4928415 991.7737886 1165.079436 1172.482025 1221.358714 1124.528783 1265.809561 1303.341281 0.936729333 0.856541539 0.694747304 0.760947116 0.89391739 0.899597091 0.937098158 0.862804547 0.971203459 1 10.34799919 -7.436472144 2.393878973 0.975239891 0.842463338 0.433590796 0.06693244 0.221480355 2.435517741 0.01405371 0.015652942 3.66E-08 7.436472144 -0.132776552 DLEFTIYDDDDVSPFLEGLEERPQRK ddPTM_HeLa_CUDC101_4h_R1 2 DLEFTIYDDDDVSPFLEGLEERPQRK 26 2 P25786;P25786-2;F5GX11 P25786 PSMA1 Proteasome subunit alpha type-1 0 0 ; ; 113.63 3.64E-08 10514000 3134.7 3076.01 3209.15 3013.62 3400.45 3302.07 3165.5 3642.09 3902.27 2780.18 FALSE FALSE TRUE 2767.255218 3170.778222 3382.646356 3136.52845 3149.605578 3239.088516 3287.594395 4056.690804 3741.416779 2763.643366 1.001306917 1.14731816 1.223980778 1.134925182 1.139657026 1.172035638 1.189587063 1.467877822 1.353798694 1 11.43235574 -1 0.220594423 0.974241181 3.119590164 0.022792151 0.134141013 18.85864683 0.2258384 0.05479068 14.5537606 0.1 1 2.145348983 DLEGSDIDTR ddPTM_HeLa_CUDC101_4h_R1 2 DLEGSDIDTR 10 0 P55060-4;P55060-3;P55060 P55060-4 CSE1L Exportin-2 0 0 ; ; 170.5 1.89E-06 106586000 9703.6 7536.6 6827.6 6784.4 8611.2 8280.8 6805.5 6844.8 7381.4 7338.5 FALSE FALSE TRUE 8566.158718 7768.793713 7196.720708 7061.097157 7975.968932 8122.857537 7067.990415 7623.984364 7077.135568 7294.850276 1.174274782 1.064969591 0.986548104 0.96795642 1.093369792 1.113505724 0.968901368 1.04511869 0.970155014 1 12.83266265 -6.989386353 24.25764964 1.084260938 1.030060461 0 0.069936518 286.9907574 655916.666 0.0127494 0.016745497 1.02E-07 6.989386353 -0.054200478 DLEHSLQMEAYER ddPTM_HeLa_CUDC101_4h_R1 1 DLEHSLQMEAYER 13 0 Q9Y5S2 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 0 0 133.88 2.19E-05 0 1102.3 1036.8 983.56 1156.3 1182.5 1103.1 1018.3 797.08 1228.2 1301.8 FALSE FALSE TRUE 973.090065 1068.742579 1036.734229 1203.458912 1095.269331 1082.060205 1057.576172 887.8163653 1177.573076 1294.056836 0.751968567 0.825885347 0.80115046 0.929989224 0.846384255 0.836176724 0.817256355 0.686072158 0.909985592 1 10.33768527 -9.416108954 1.090187004 1.00224957 0.812446402 0.414573591 0.065066852 0.308760275 0.643914621 0.045534425 0.010969521 3.84E-10 9.416108954 -0.189803168 S(ph)SPELEDTATSSK ddPTM_HeLa_CUDC101_4h_R1 2 SSPELEDTATSSK 13 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 S(0.868)S(0.131)PELEDT(0.001)ATSSK;S(0.961)S(0.038)PELEDT(0.001)ATSSK ; 118.73 0.00029484 4793700 4229.8 4095.8 4824.3 4431.7 4220 4426.9 3961.8 3124.7 4569.8 6276.2 TRUE FALSE FALSE 3733.989256 4221.986743 5085.116251 4612.443881 3908.699007 4342.464258 4114.607953 3480.403218 4381.43091 6238.868883 0.598504204 0.676723108 0.815070223 0.739307712 0.626507638 0.696033903 0.659511849 0.557858048 0.702279691 1 12.60706877 -9.361426446 0.925920337 1.01378651 0.671592312 0.098429838 0.113298394 0.254573551 0.364969803 0.061952706 0.013735308 4.35E-10 9.361426446 -0.342194198 TTHLAGALS(ph)PGEAWPFESV ddPTM_HeLa_CUDC101_4h_R1 1 TTHLAGALSPGEAWPFESV 19 0 Q9Y3X0 Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 1 0 TTHLAGALS(1)PGEAWPFESV 110.6 0.00030008 110940000 2064.8 2022.1 1792.9 1347 2367.7 2321.6 1901.8 1197.3 2212 2313 TRUE FALSE FALSE 1822.767274 2084.398504 1889.829597 1401.936482 2193.039488 2277.319348 1975.153063 1333.595792 2120.820424 2299.242173 0.79276872 0.906558921 0.821935862 0.609738504 0.9538097 0.990465195 0.859045248 0.580015367 0.922399758 1 11.16694271 -9.361294732 0.755496782 1.018660354 0.819346228 0.163083669 0.128014116 1.082206237 0.935077116 0.138804902 0.025259854 4.35E-10 9.361294732 -0.199314126 DLESAEERR ddPTM_HeLa_CUDC101_4h_R1 2 DLESAEERR 9 1 O43242 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 0 ; ; 133.13 0.0029112 22464000 5984.4 5463.1 6037.6 5351.2 7070.1 5812.3 5656 6467 6069.2 6369.7 FALSE FALSE TRUE 5282.917704 5631.411636 6364.010919 5569.445066 6548.552809 5701.440061 5874.153815 7203.177139 5819.025007 6331.812741 0.834345221 0.889383794 1.005085144 0.879597249 1.034230334 0.900443569 0.92772071 1.137616893 0.919014071 1 12.62840287 -5.763826811 24.99602839 0.921560032 0.987728483 0.193913904 0.077062911 108.4255322 1135218.686 0.012878644 0.02416947 1.72E-06 5.763826811 0.066168451 TGVTST(ph)S(ph)DSEEEGDDQEGEKK ddPTM_HeLa_CUDC101_4h_R1 1 TGVTSTSDSEEEGDDQEGEKK 21 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 2 0 T(0.014)GVT(0.127)S(0.282)T(0.647)S(0.633)DS(0.296)EEEGDDQEGEKK 55.267 0.03094 75070000 3655 3340.3 3494.4 3525.1 4142.8 3507.4 3511.5 3022.6 4170.8 4766.9 TRUE FALSE FALSE 3226.566441 3443.210684 3683.317834 3668.868815 3837.193898 3440.502189 3646.939731 3366.680566 3998.877859 4738.546267 0.680919054 0.726638612 0.77730967 0.774260418 0.809782934 0.726067025 0.76963261 0.710488065 0.843903939 1 12.21022881 -9.361100418 1.014258617 1.004328654 0.74554725 0.538161394 0.058415812 0.161863142 0.290044892 0.030910835 0.007512225 4.35E-10 9.361100418 -0.258781404 WMEANQHS(ph)LNILGQKVSMHY(ph)S(ph)DPK ddPTM_HeLa_CUDC101_4h_R1 1 WMEANQHSLNILGQKVSMHYSDPK 24 1 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 3 0 WMEANQHS(1)LNILGQKVS(0.527)MHY(0.728)S(0.745)DPK 45.011 0.0028665 0 1015.1 829.59 1114.8 908.43 885.98 966.44 998.98 1041.9 960.56 1262.3 TRUE FALSE FALSE 896.1115168 855.1486846 1175.06946 945.479702 820.6230205 948.0067672 1037.510993 1160.505684 920.9653102 1254.791783 0.714151566 0.681506443 0.936465695 0.753495293 0.653991388 0.755509224 0.826839167 0.924859168 0.733958671 1 10.29323227 -9.360951506 1.050331823 1.001816816 0.773995292 0 0.120312 0.382151725 0.745022524 0.065075756 0.016379061 4.36E-10 9.360951506 -0.227821524 SLS(ph)DPIPQR ddPTM_HeLa_CUDC101_4h_R1 1 SLSDPIPQR 9 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 S(0.005)LS(0.995)DPIPQR 96.113 0.021386 15543000 1799 1585.9 1556.5 1352 1342 1659.9 1494.1 1365.4 1700.6 1327.3 TRUE FALSE FALSE 1588.123947 1634.759699 1640.649098 1407.140404 1243.003334 1628.240173 1551.727937 1520.831617 1630.500548 1319.405161 1.203666618 1.239012661 1.243476339 1.066496059 0.942093733 1.2340714 1.176081452 1.152664596 1.235784577 1 10.36567194 -9.360916323 1.108559144 1.000845775 1.158928829 0 0.11357704 0.51562285 1.14303493 0.062056885 0.016471981 4.36E-10 9.360916323 0.158083054 IS(ph)HEGSPVKPVAIR ddPTM_HeLa_CUDC101_4h_R1 1 ISHEGSPVKPVAIR 14 1 Q96II8-3;Q96II8;Q96II8-2 Q96II8-3 LRCH3 Leucine-rich repeat and calponin homology domain-containing protein 3 1 0 IS(0.991)HEGS(0.009)PVKPVAIR 76.24 0.018919 60068000 1952.7 1630.7 1821.7 2196.5 2104.2 2005 1784.8 1767.2 2324.1 2619 TRUE FALSE FALSE 1723.807466 1680.939934 1920.186612 2286.082764 1948.977358 1966.757966 1853.640334 1968.370905 2228.299614 2603.422072 0.662131387 0.645665546 0.737562546 0.878106854 0.748621355 0.755451061 0.712001467 0.756070607 0.855911778 1 11.34619351 -9.360796748 1.06385285 1.001266158 0.733714321 0.488702337 0.072947774 0.234300556 0.47101841 0.04706548 0.01199973 4.36E-10 9.360796748 -0.267551837 SS(ph)SFSELCHR ddPTM_HeLa_CUDC101_4h_R1 1 SSSFSELCHR 10 0 Q5T8I3-2;Q5T8I3 Q5T8I3-2 FAM102B Protein FAM102B 1 0 S(0.1)S(0.45)S(0.45)FSELCHR 158.3 5.13E-05 15634000 3703.9 2723.7 2560.5 2742.4 3280.4 2588.2 2267.9 2677.6 2728.9 1083.5 TRUE FALSE FALSE 3269.734457 2807.613969 2698.928375 2854.246926 3038.411427 2538.834397 2355.373663 2982.407161 2616.413587 1077.055294 3.035809281 2.606750076 2.505840128 2.650046792 2.821035693 2.357199683 2.186864199 2.769038115 2.429228659 1 10.0728766 -9.360484631 1.004716908 0.96859633 2.627763778 0.163096212 0.486597783 0.161237 0.282450712 0.196654091 0.047385404 4.36E-10 9.360484631 1.659167448 DLFDLNSSEEDDTEGFSER ddPTM_HeLa_CUDC101_4h_R1 1 DLFDLNSSEEDDTEGFSER 19 0 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 0 0 257.48 8.28E-70 7381200 1624.1 1234.2 1636.3 1457.3 1868.9 1663.9 1418.6 1192 1405.7 1322.2 FALSE FALSE TRUE 1433.72546 1272.224239 1724.763328 1516.734993 1731.03497 1632.16388 1473.315877 1327.692462 1347.756451 1314.335496 1.09083675 0.96796004 1.312270218 1.153993785 1.31704194 1.241816785 1.120958752 1.010162524 1.025428025 1 10.36011787 -6.771964456 24.99996036 1.038473541 1.195570157 0.459940947 0.090304496 157.7580982 374718.4481 0.014979398 0.019800512 1.69E-07 6.771964456 0.157096616 DLFDPIIEDR ddPTM_HeLa_CUDC101_4h_R1 4 DLFDPIIEDR 10 0 P12277;G3V4N7;G3V461 P12277 CKB Creatine kinase B-type 0 0 ;;; ;;; 170.5 1.89E-06 85182000 6093.9 5136.03 4646.36 5306.9 4993.63 4748.86 4727.51 4387.61 6082.6 6215.4 FALSE FALSE TRUE 5379.58228 5294.264997 4897.556276 5523.33832 4625.259864 4658.283408 4909.851644 4887.077787 5831.872653 6178.430524 0.870703694 0.856894801 0.792686145 0.893971098 0.748614045 0.753959017 0.794676192 0.790990166 0.94390843 1 12.59302469 -8.401802038 0.255501842 1.067663283 0.750087492 0.757396275 0.039023969 0.828327644 0.128456419 0.094560518 0.039010683 3.96E-09 8.401802038 -0.31757579 NIDDASQMDLFHRDS(ph)DDDQTEEQLDESEAR ddPTM_HeLa_CUDC101_4h_R1 2 NIDDASQMDLFHRDSDDDQTEEQLDESEAR 30 1 E7ESG2;Q9HAW4-2;Q9HAW4-3;Q9HAW4 E7ESG2 CLSPN Claspin 1 0 NIDDAS(0.11)QMDLFHRDS(0.86)DDDQT(0.031)EEQLDESEAR;NIDDAS(0.042)QMDLFHRDS(0.875)DDDQT(0.082)EEQLDESEAR ; 105.75 1.43E-10 19818400 2241.2 2234.84 2004.8 1738.56 2285.3 2271.6 2367.5 1611.6 2539.5 2699.1 TRUE FALSE FALSE 1978.489933 2303.692771 2113.185552 1809.465991 2116.717972 2228.273015 2458.815268 1795.05803 2434.820735 2683.045633 0.737404504 0.858611103 0.787607011 0.67440746 0.788923582 0.830501348 0.916426928 0.669037458 0.907483907 1 11.38965588 -9.360160472 0.910343846 1.009955864 0.784277472 0.419905917 0.077556039 0.385990968 0.530985454 0.061460336 0.013421834 4.36E-10 9.360160472 -0.225678392 GQDVVQEWQETSPT(ph)REEPAGEQK ddPTM_HeLa_CUDC101_4h_R1 1 GQDVVQEWQETSPTREEPAGEQK 23 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GQDVVQEWQET(0.01)S(0.011)PT(0.979)REEPAGEQK 86.832 0.00039679 39837000 2336 1898.9 2189.1 2063.1 2508.4 2172.2 2087.4 2237.1 2245.7 2647.6 TRUE FALSE FALSE 2062.177621 1957.402858 2307.449368 2147.242135 2323.360329 2130.768904 2167.911717 2491.762421 2153.131295 2631.851957 0.783546208 0.743735928 0.876739803 0.81586737 0.882785342 0.809608192 0.823720997 0.946771498 0.818105019 1 11.36186262 -9.359688569 1.085141516 0.999930386 0.830100581 0 0.076874536 0.287588569 0.606352635 0.036900904 0.009608878 4.37E-10 9.359688569 -0.169829805 DLFPYEESK(ac)EK ddPTM_HeLa_CUDC101_4h_R1 2 DLFPYEESKEK 11 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 1 ; DLFPYEESK(1)EK;DLFPYEESK(1)EK 121.61 0.0019383 1166160 1161.65 714.1 466.56 376.79 1545.99 1069.97 1375.27 1266.45 949.38 690.57 FALSE TRUE FALSE 1025.483148 736.1005746 491.7836449 392.1571248 1431.945398 1049.562105 1428.314625 1410.617549 910.2461546 686.4624589 1.493866321 1.072310022 0.716402825 0.5712725 2.085977724 1.528943195 2.080688617 2.05490851 1.325995534 1 9.423037015 -5.741554961 24.99990229 1.140797095 1.918656338 0.675763418 0.302098079 144.7128422 181940.8069 0.050448337 0.100789638 1.81E-06 5.741554961 0.777859243 S(ph)SPGLYTSPGQDSLQPTAVSPPYGGDISPVSPSR ddPTM_HeLa_CUDC101_4h_R1 1 SSPGLYTSPGQDSLQPTAVSPPYGGDISPVSPSR 34 0 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(0.474)S(0.474)PGLY(0.001)T(0.023)S(0.027)PGQDSLQPTAVSPPYGGDISPVSPSR 106.26 5.16E-15 7687100 860.63 869.33 725.06 777.99 993.82 859.61 864.42 1007 1131.6 1282.1 TRUE FALSE FALSE 759.748256 896.1130269 764.2589368 809.719795 920.5078786 843.2143715 897.760969 1121.63281 1084.954969 1274.474012 0.596126911 0.703123813 0.59966616 0.63533645 0.722264926 0.661617548 0.70441685 0.880075073 0.851296267 1 10.31568624 -9.359569371 1.022246181 1.004658636 0.678440136 0.513360205 0.088192062 0.240632827 0.439731395 0.058061217 0.014253076 4.37E-10 9.359569371 -0.3262185 DLGDLIEATEFDR ddPTM_HeLa_CUDC101_4h_R1 1 DLGDLIEATEFDR 13 0 E5RHM7;E5RIH5;Q6NXR4 E5RHM7 TTI2 TELO2-interacting protein 2 0 0 138.76 0.0044184 8551700 1911.9 1540.6 1416.8 1362.3 1509.3 1400.7 1354.1 1604.6 1505 1314.7 FALSE FALSE TRUE 1687.78998 1588.06406 1493.396494 1417.860482 1397.961946 1373.983981 1406.328091 1787.261178 1442.963263 1306.880106 1.291465049 1.215156656 1.142718821 1.08492009 1.069694106 1.051346619 1.076095722 1.367578533 1.104128264 1 10.35191108 -9.643232181 1.496635091 1.000639749 1.17248087 0.122407465 0.103131019 0.452810051 1.834187648 0.076151596 0.017540171 2.27E-10 9.643232181 0.171841121 ATGDGS(ph)S(ph)PELPSLER ddPTM_HeLa_CUDC101_4h_R1 1 ATGDGSSPELPSLER 15 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 2 0 ATGDGS(0.998)S(0.986)PELPS(0.015)LER 139.21 0.0044481 8890500 2264.6 2160.8 1981.5 1905.6 2270.5 1899.5 1850.1 2156.3 2316.1 2663.7 TRUE FALSE FALSE 1999.147021 2227.371687 2088.625884 1983.318605 2103.009738 1863.270202 1921.458977 2401.764476 2220.629378 2647.856194 0.755005889 0.841198133 0.788798836 0.749028066 0.7942311 0.703690105 0.725665911 0.907060014 0.838651805 1 11.37060906 -9.359025846 0.661948226 1.033151453 0.774963289 0.239768434 0.074581864 0.45918433 0.286387335 0.070732884 0.011515107 4.37E-10 9.359025846 -0.258188163 DLGGFDEDAEPRR ddPTM_HeLa_CUDC101_4h_R1 3 DLGGFDEDAEPRR 13 1 H0Y3T6;G3V1E2;A0A5F9UJX7;A0A5F9UP49;Q9BRK5-4;Q9BRK5-3;Q9BRK5-6;Q9BRK5 H0Y3T6 SDF4 45 kDa calcium-binding protein 0 0 ;; ;; 136.7 2.23E-05 3041700 6402.4 7470.2 5769.8 6569.2 8227.4 8032.1 6966.9 5319.2 6822.5 4967.2 FALSE FALSE TRUE 5651.920377 7700.348008 6081.732841 6837.120371 7620.481093 7878.901075 7235.615667 5924.716227 6541.273662 4937.654873 1.14465683 1.559515236 1.231704726 1.384689806 1.543340166 1.595676749 1.465395183 1.19990489 1.324773365 1 12.26961028 -7.43020718 3.80499835 1.060279603 1.428951024 0.359272435 0.151394857 0.112080047 2.867191958 0.023314076 0.026172835 3.71E-08 7.43020718 0.36867142 TFS(ph)SSPPKPGDIFEVELAK ddPTM_HeLa_CUDC101_4h_R1 1 TFSSSPPKPGDIFEVELAK 19 1 Q12923-3;Q12923;Q12923-4;Q12923-2 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 0 T(0.056)FS(0.335)S(0.305)S(0.305)PPKPGDIFEVELAK 52.061 0.033939 11613000 1751.6 1611.2 1622 1511.1 2074.4 1674.2 1359.6 1694.6 1617.9 2122 TRUE FALSE FALSE 1546.280103 1660.839162 1709.690226 1572.72919 1921.375645 1642.267424 1412.040227 1887.506414 1551.209477 2109.37825 0.733050179 0.787359575 0.810518562 0.745588986 0.910872976 0.778555209 0.669410632 0.894816477 0.735387064 1 11.0426021 -9.358779115 0.996687035 1.00449911 0.785864275 0 0.10562546 0.311056328 0.534772049 0.049801845 0.011933742 4.38E-10 9.358779115 -0.218634835 DLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI ddPTM_HeLa_CUDC101_4h_R1 1 DLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 34 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 0 0 144.43 1.90E-23 6110100 2492.8 1899 1597.3 1803.3 1893.5 1956.7 1774.8 1842.4 1988.8 2424.3 FALSE FALSE TRUE 2200.597763 1957.505939 1683.65487 1876.846369 1753.820277 1919.379208 1843.254631 2052.131369 1906.820822 2409.880156 0.913156514 0.812283521 0.698646721 0.778813156 0.727762446 0.796462514 0.764873982 0.851549138 0.791251307 1 11.23474569 -7.410007133 1.573584964 0.969773979 0.767835299 0.311965939 0.069921633 0.108646011 0.521196668 0.008730494 0.009767347 3.89E-08 7.410007133 -0.20193868 NVMSAFGLTDDQVSGPPS(ph)APAEDR ddPTM_HeLa_CUDC101_4h_R1 1 NVMSAFGLTDDQVSGPPSAPAEDR 24 0 Q92734-4;Q92734-3;Q92734-2;Q92734 Q92734-4 TFG Protein TFG 1 0 NVMSAFGLTDDQVS(0.023)GPPS(0.977)APAEDR 95.713 1.15E-05 3651900 718.1 488.12 466.6 611.28 585.4 509.04 608.15 587.68 517.06 236.39 TRUE FALSE FALSE 633.9254066 503.1583986 491.8258074 636.2106406 542.2162083 499.3309101 631.6065492 654.5791157 495.7465679 234.9839418 2.697739266 2.141245886 2.093018798 2.707464331 2.307460689 2.124957588 2.687871114 2.785633396 2.109704026 1 7.87641836 -9.358729708 0.812175105 0.884051558 2.448392014 0.288436746 0.423754081 0.255202716 0.264513572 0.266644059 0.052151309 4.38E-10 9.358729708 1.564340456 MPIEDS(ph)SPEKGREEAASK ddPTM_HeLa_CUDC101_4h_R1 1 MPIEDSSPEKGREEAASK 18 2 A0A088AWL3;O75376;O75376-2 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 MPIEDS(0.5)S(0.5)PEKGREEAASK 69.255 0.016491 135500000 1880.6 1878 1629.6 1652.1 1942.8 1377.1 1646.4 2109.7 1906.4 2253.2 TRUE FALSE FALSE 1660.158919 1935.858954 1717.701105 1719.479779 1799.483515 1350.834112 1709.9022 2349.85972 1827.817385 2239.797866 0.74120926 0.86430074 0.766900054 0.767694177 0.803413353 0.603105366 0.763418086 1.049139191 0.816063544 1 11.12915282 -9.358077161 0.872211296 1.012506019 0.784397255 0.03420467 0.120002018 0.59236689 0.733615666 0.093423483 0.019611616 4.38E-10 9.358077161 -0.228108764 QAGIGGEPAAAGAGCS(ph)PRPK ddPTM_HeLa_CUDC101_4h_R1 2 QAGIGGEPAAAGAGCSPRPK 20 1 J3QQY0;J3KSZ8;Q68DK7 J3QQY0 MSL1 Male-specific lethal 1 homolog 1 0 QAGIGGEPAAAGAGCS(1)PRPK;QAGIGGEPAAAGAGCS(1)PRPK ; 108.3 9.98E-05 62759000 5659 4754.6 4790.2 4367.9 4680.8 3968.9 4108.7 3546.2 5209.5 2798.3 TRUE FALSE FALSE 4995.660598 4901.08359 5049.172702 4546.041842 4335.506709 3893.199845 4267.173935 3949.885074 4994.762205 2781.655587 1.795930676 1.761930418 1.815168177 1.634293571 1.558606583 1.399598089 1.534041078 1.419976323 1.795607705 1 11.44172809 -9.357565953 1.07142889 0.998650816 1.627244705 0 0.278740488 0.235153616 0.481396497 0.111087689 0.028653577 4.39E-10 9.357565953 0.628593888 DHS(ph)PTPS(ph)VFNSDEER ddPTM_HeLa_CUDC101_4h_R1 1 DHSPTPSVFNSDEER 15 0 Q6UN15;Q6UN15-5;Q6UN15-3 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 0 DHS(0.989)PT(0.048)PS(0.934)VFNS(0.029)DEER 120.82 0.0029171 23601000 1280.2 1140.8 1534.5 1505.3 1515.7 1324.8 1508.6 984.69 1662.7 2269.7 TRUE FALSE FALSE 1130.136897 1175.946696 1617.459712 1566.69264 1403.889831 1299.531647 1566.787207 1096.783129 1594.162802 2256.199723 0.500902861 0.521206826 0.716895625 0.694394483 0.622236505 0.57598254 0.694436397 0.486119699 0.706569895 1 11.13967907 -9.357200094 1.019898858 1.005842407 0.601540015 0.327370079 0.117714916 0.208565427 0.379389209 0.062251605 0.015299034 4.39E-10 9.357200094 -0.404302391 FAQK(ac)YGGAEK ddPTM_HeLa_CUDC101_4h_R1 1 FAQKYGGAEK 10 1 F8VQR7;F8VW96;Q16527 F8VQR7 CSRP2 Cysteine and glycine-rich protein 2 0 1 FAQK(1)YGGAEK 113.44 0.0048515 869620 428.84 586.38 663.04 707.32 977.24 1065.5 809.05 1206 321.76 303.91 FALSE TRUE FALSE 378.5720253 604.4456728 698.885948 736.1675669 905.1509521 1045.177363 840.2553295 1343.286165 308.4969166 302.1023298 1.253125143 2.000797787 2.313408005 2.436815259 2.996173359 3.459679915 2.781359978 4.446460794 1.021166956 1 8.2388935 -5.936525272 0.423510997 0.945575366 4.21137272 0.888991271 0.351785269 0.337216597 0.099431925 0.110331719 0.460779818 1.16E-06 5.936525272 3.265797354 up ASVSGPNS(ph)PSESRR ddPTM_HeLa_CUDC101_4h_R1 1 ASVSGPNSPSESRR 14 1 A6PVI4;Q9UJV3-2;Q9UJV3 A6PVI4 MID2 Probable E3 ubiquitin-protein ligase MID2 1 0 ASVSGPNS(0.955)PS(0.023)ES(0.023)RR 77.795 0.016273 4157000 911.66 731.56 959.04 788.27 1046.5 946.51 753.16 966.54 768.43 1191.6 TRUE FALSE FALSE 804.7965968 754.0984965 1010.888603 820.4190578 969.3017799 928.4568987 782.2096335 1076.567007 736.7549902 1184.51231 0.679432869 0.636632047 0.853421779 0.692621808 0.818312964 0.783830519 0.660364292 0.908869412 0.621990151 1 10.21007748 -9.35713108 1.065179628 1.000910291 0.74683657 0 0.143249833 0.295379365 0.596406834 0.056275638 0.014441004 4.39E-10 9.35713108 -0.254073721 DSNELS(ph)DSAGEEDSADLKR ddPTM_HeLa_CUDC101_4h_R1 1 DSNELSDSAGEEDSADLKR 19 1 Q9Y6X9-2;Q9Y6X9 Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 1 0 DS(0.088)NELS(0.846)DS(0.065)AGEEDS(0.001)ADLKR 55.718 0.023167 5030300 1531.8 1590.6 1161.3 1517.3 1620.5 1420.5 1434.2 1297.4 1713 1911.6 TRUE FALSE FALSE 1352.244726 1639.604501 1224.083391 1579.182052 1500.958943 1393.406329 1489.517574 1445.090772 1642.389415 1900.229718 0.711621712 0.862845415 0.644176532 0.831047971 0.789882891 0.733283095 0.783861846 0.760482145 0.864310983 1 10.89195812 -9.356844902 0.906691163 1.011031789 0.762368178 0.429769036 0.070629487 0.265172302 0.361755876 0.046382967 0.010138048 4.40E-10 9.356844902 -0.248663611 NS(ph)PLDCGSASPNK ddPTM_HeLa_CUDC101_4h_R1 1 NSPLDCGSASPNK 13 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 NS(0.993)PLDCGS(0.002)AS(0.004)PNK 135.57 0.00090777 16453000 1832 1377.1 1699 1530.8 1746 1612.9 1214.5 1456 1484.8 1341.5 TRUE FALSE FALSE 1617.255737 1419.526819 1790.853079 1593.232641 1617.201059 1582.13662 1261.343672 1621.745155 1423.595916 1333.520698 1.21277138 1.064495527 1.342951093 1.194756589 1.212730376 1.186435742 0.945874836 1.21613797 1.067546921 1 10.3810245 -9.356730735 0.959421934 0.994765487 1.172364754 0.221836792 0.100876385 0.606614507 0.95116307 0.077635517 0.017960051 4.40E-10 9.356730735 0.177599267 DLIDFDDR ddPTM_HeLa_CUDC101_4h_R1 2 DLIDFDDR 8 0 P15924-2;P15924-3;P15924 P15924-2 DSP Desmoplakin 0 0 ; ; 131.06 0.029888 12149200 9444.1 8178.9 6461.5 7409.8 7877.1 7983.8 7129.3 6748.7 8902.9 9572.4 FALSE FALSE TRUE 8337.076914 8430.882215 6810.828235 7712.003672 7296.022026 7831.522317 7404.279489 7516.944729 8535.918694 9515.462939 0.876160936 0.886019132 0.715764254 0.810470675 0.76675429 0.823031141 0.778131294 0.789971521 0.897057636 1 13.21605813 -7.962154431 0.515992608 0.997032389 0.77843122 0.617474985 0.048007473 0.239901404 0.152400915 0.021031412 0.013419406 1.09E-08 7.962154431 -0.218601168 DRPVGGS(ph)PGGPR ddPTM_HeLa_CUDC101_4h_R1 4 DRPVGGSPGGPR 12 1 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR;DRPVGGS(1)PGGPR ;;; 80.719 0.018914 555040000 4639.66 4290.45 4046.88 4103.76 4012.01 4056.22 4057.65 4372.51 3971.2 4893.89 TRUE FALSE FALSE 4095.806088 4422.633679 4265.666574 4271.129071 3716.052015 3978.854362 4214.15492 4870.258864 3807.505455 4864.780925 0.841930223 0.909112609 0.876846592 0.877969458 0.763868317 0.817889731 0.866257902 1.00112604 0.782667404 1 12.24815912 -9.35629346 0.782001898 1.01241229 0.863428977 0 0.089195398 0.632729998 0.597489102 0.061699355 0.011680895 4.40E-10 9.35629346 -0.148983313 CEERS(ph)PS(ph)FGEDYYGPSR ddPTM_HeLa_CUDC101_4h_R1 1 CEERSPSFGEDYYGPSR 17 1 H3BUL5;H3BVF8;H3BQG1;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 2 0 CEERS(1)PS(0.999)FGEDY(0.001)YGPSR 116.04 0.0065178 9413800 1734.4 1400.2 1115 1278.3 1549.8 1466.9 1395.3 1100.2 1173.3 804.58 TRUE FALSE FALSE 1531.096261 1443.338502 1175.280273 1330.434599 1435.474342 1438.921327 1449.117188 1225.442321 1124.936077 799.7943224 1.914362503 1.804637095 1.469478139 1.663470923 1.794804366 1.799114205 1.81186231 1.532196824 1.406531712 1 9.643485229 -9.356147998 0.987167282 0.983071553 1.736715471 0.541999522 0.176789579 0.197565941 0.33219686 0.108506917 0.025851031 4.40E-10 9.356147998 0.753643918 DLIHDQDEDEEEEEGQR ddPTM_HeLa_CUDC101_4h_R1 2 DLIHDQDEDEEEEEGQR 17 0 F2Z2K0;Q9UNZ2-4;Q9UNZ2;Q9UNZ2-5;R4GNE6 F2Z2K0 NSFL1C NSFL1 cofactor p47 0 0 ; ; 175.27 2.47E-07 105201000 12695.8 12093.6 11639.9 11824.3 11580.1 11363.6 10883 6825.3 14245.2 12544.1 FALSE FALSE TRUE 11207.61757 12466.18948 12269.1882 12306.54606 10725.85909 11146.85826 11302.76096 7602.264563 13658.00683 12469.48714 0.898803411 0.999735542 0.983936875 0.986932817 0.860168424 0.893930772 0.906433507 0.609669386 1.09531424 1 13.60611451 -3.775173343 1.221763712 0.95339992 1.06E-19 0.729727625 0.064333977 1.452999233 0.799741769 0.007870104 2.339678971 0.000167813 3.775173343 -0.95339992 DLIHDVSFDFHGR ddPTM_HeLa_CUDC101_4h_R1 3 DLIHDVSFDFHGR 13 0 K7ENI5;K7EP88;K7ELV2;Q96EE3;Q96EE3-1 K7ENI5 SEH1L Nucleoporin SEH1 0 0 ;; ;; 171.49 3.26E-07 18039600 14062.1 9440.9 8568.6 8127 11783.1 12483.7 10236.9 9043.3 12302.8 11799.4 FALSE FALSE TRUE 12413.76195 9731.762939 9031.844435 8458.454188 10913.88419 12245.59422 10631.74066 10072.75272 11795.67338 11729.21664 1.058362407 0.829702719 0.770029637 0.721143998 0.93048705 1.044024899 0.906432287 0.858774548 1.005665914 1 13.51781904 -7.262957122 24.86628 1.027560027 0.867457817 0.415587519 0.084413363 96.66622737 1583747.911 0.015870267 0.018664056 5.46E-08 7.262957122 -0.16010221 DLINLAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DLINLAKK 8 1 M0R0P1;M0R299;M0QXL5;M0R2Q4;P22087 M0R0P1 FBL rRNA 2-O-methyltransferase fibrillarin 0 1 ; DLINLAK(1)K;DLINLAK(1)K 99.802 0.014864 991050 1992.42 1127.84 748.78 1289.42 1066.31 1023.92 1299.01 1098.83 892.32 753.24 FALSE TRUE FALSE 1758.871548 1162.587414 789.2613117 1342.008121 987.6504357 1004.390432 1349.113251 1223.916366 855.5381919 748.759695 2.349046777 1.552684288 1.054091609 1.792308173 1.319048611 1.341405579 1.801797372 1.634591677 1.142607164 1 9.548358968 -4.673700291 18.28714001 1.574420967 1.718178181 0 0.396066891 16.57048478 3435.747658 0.072765387 0.272267113 2.12E-05 4.673700291 0.143757213 DLISHDEMFSDIYK ddPTM_HeLa_CUDC101_4h_R1 4 DLISHDEMFSDIYK 14 0 Q5W0H4;A0A0B4J2C3;P13693 Q5W0H4 TPT1 Translationally-controlled tumor protein 0 0 ;;; ;;; 184.11 6.05E-11 197713700 28725.9 22603 21580.4 21440.3 26837 24087.9 22476.4 24109.9 24947.1 24143.9 FALSE FALSE TRUE 25358.69355 23299.37164 22747.1017 22314.72811 24857.28798 23628.46344 23343.32228 26854.47356 23918.76998 24000.29101 1.056599419 0.97079538 0.947784412 0.929769064 1.035707774 0.984507373 0.972626635 1.118922831 0.996603332 1 14.55076428 -10.19712051 3.785035527 0.999516959 1.01290466 0 0.053885591 1.817049213 47.95970366 0.054426654 0.008031311 6.35E-11 10.19712051 0.013387701 TIEAAEALLHMES(ph)PTCLR ddPTM_HeLa_CUDC101_4h_R1 2 TIEAAEALLHMESPTCLR 18 0 Q15723-2;Q15723-3;Q15723-1;Q15723;D6RHI1;Q15723-4 Q15723-2 ELF2 ETS-related transcription factor Elf-2 1 0 TIEAAEALLHMES(0.92)PT(0.08)CLR;TIEAAEALLHMES(0.755)PT(0.245)CLR ; 109.67 0.00032716 13426700 6066.11 5136.87 4755.49 4574.11 5437.81 4780.25 4508.86 3057.85 5450.03 2918.67 TRUE FALSE FALSE 5355.049781 5295.130876 5012.586174 4760.661977 5036.67359 4689.074696 4682.768241 3405.943284 5225.377457 2901.309621 1.845735368 1.825083003 1.727697774 1.640866574 1.73600003 1.616192447 1.614018789 1.173933061 1.801040957 1 11.50248855 -9.355963396 1.060308477 0.997055227 1.668936333 0 0.301402315 0.257322102 0.514135536 0.129367677 0.033102476 4.41E-10 9.355963396 0.671881106 QICVVMLETLSQS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 7 QICVVMLETLSQSPPK 16 0 Q15366-2;Q15366;Q15366-5;Q15366-8;H3BRU6;F8VZX2 Q15366-2;H3BRU6 PCBP2 Poly(rC)-binding protein 2 1 0 QICVVMLET(0.001)LS(0.12)QS(0.879)PPK;QICVVMLETLS(0.004)QS(0.996)PPK;QICVVMLETLS(0.01)QS(0.99)PPK;QICVVMLETLS(0.004)QS(0.996)PPK;QICVVMLETLSQS(1)PPK;QICVVMLET(0.002)LS(0.386)QS(0.613)PPK;QICVVMLETLS(0.011)QS(0.989)PPK ;;;;;; 268.2 9.48E-72 473729500 22001.91 17434.67 15600.16 17464.05 15089.24 16996.3 14129.49 10226.78 17392.49 4493.87 TRUE FALSE FALSE 19422.87946 17971.81152 16443.55184 18176.30945 13976.13683 16672.1239 14674.46916 11390.9553 16675.5642 4467.140261 4.347944843 4.023113327 3.681001911 4.068891591 3.12865413 3.732169334 3.284980615 2.549943505 3.73293947 1 12.12513584 -9.355868317 1.040015226 0.97541853 3.660775466 0 0.963287622 0.194617868 0.371271802 0.388369483 0.097505582 4.41E-10 9.355868317 2.685356936 DLLHNEDR ddPTM_HeLa_CUDC101_4h_R1 2 DLLHNEDR 8 0 Q8N684-2;Q8N684;Q8N684-3;F5H669 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 0 ; ; 125.16 0.00089797 4136400 7934.5 6273 6491.2 6398.6 6332.5 6635 5885.5 5173.2 7423.4 8682.2 FALSE FALSE TRUE 7004.429938 6466.263695 6842.133907 6659.562565 5865.364091 6508.44843 6112.505707 5762.096177 7117.40431 8630.557888 0.811584839 0.749228935 0.792780026 0.771625966 0.679604281 0.754116769 0.708239929 0.6676389 0.824674882 1 13.0752381 -9.771115133 0.186547515 1.260686439 0.64374353 0.520113375 0.06232085 1.948352099 0.088085198 0.298778417 0.051440114 1.69E-10 9.771115133 -0.616942909 DLLHNEDRHDDYFQER ddPTM_HeLa_CUDC101_4h_R1 4 DLLHNEDRHDDYFQER 16 1 Q8N684-2;Q8N684;Q8N684-3 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 0 ;;; ;;; 75.764 0.0084615 140273000 16565.9 15116.9 14406.5 14161.8 15688.2 14736.7 14245.2 14373.5 15529.3 16700.9 FALSE FALSE TRUE 14624.07031 15582.63377 15185.35897 14739.37942 14530.91274 14455.622 14794.64214 16009.72114 14889.17568 16601.5623 0.880885187 0.938624539 0.914694574 0.887830865 0.875273813 0.870738653 0.891159631 0.964350273 0.896853887 1 14.01903139 -9.382109314 0.809594138 1.008798717 0.899609613 0 0.04246146 0.403814762 0.4099218 0.029614233 0.005576869 4.15E-10 9.382109314 -0.109189104 S(ph)LDFQAT(ph)T(ph)MFWYRQLRK ddPTM_HeLa_CUDC101_4h_R1 1 SLDFQATTMFWYRQLRK 17 2 A0A075B6H5 A0A075B6H5 TRBV20OR9-2 3 0 S(1)LDFQAT(0.999)T(0.999)MFWY(0.002)RQLRK 45.88 0.0033622 0 2743.8 2312.4 2903.1 2339 2807.6 2431.2 2205.8 2264.9 2798.1 3030.4 TRUE FALSE FALSE 2422.175923 2383.642303 3060.050367 2434.39453 2600.488942 2384.828911 2290.878445 2522.727061 2682.761134 3012.375046 0.804075152 0.791283378 1.015826489 0.808131289 0.863268651 0.791677289 0.760489119 0.837454508 0.890580055 1 11.55668568 -9.355856428 0.813817433 1.013291778 0.832258643 0.207879672 0.074627266 0.550946366 0.574824885 0.066625092 0.013111666 4.41E-10 9.355856428 -0.181033135 GSAPHSESDLPEQEEEILGS(ph)DDDEQEDPNDYCK ddPTM_HeLa_CUDC101_4h_R1 2 GSAPHSESDLPEQEEEILGSDDDEQEDPNDYCK 33 0 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3;D6RBM8 H3BLV9 SRPK1 SRSF protein kinase 1 1 0 GSAPHSESDLPEQEEEILGS(1)DDDEQEDPNDYCK;GSAPHSESDLPEQEEEILGS(1)DDDEQEDPNDYCK ; 123.21 2.88E-18 41867000 9006.3 7011.4 6126.4 5728.4 8506 7737.6 7350.5 7876.2 8048.3 3655.2 TRUE FALSE FALSE 7950.595167 7227.412923 6457.611715 5962.028912 7878.529326 7590.018172 7634.011247 8772.794771 7716.545667 3633.458708 2.188161695 1.989127579 1.777262998 1.640868768 2.168327745 2.088923745 2.101031513 2.414447356 2.123746625 1 11.8271278 -9.355765742 0.747717497 0.889015504 2.046882023 0 0.403494112 0.330148745 0.278878918 0.244247277 0.044385567 4.41E-10 9.355765742 1.157866519 DLLIAYYDVDYEK ddPTM_HeLa_CUDC101_4h_R1 2 DLLIAYYDVDYEK 13 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 ; ; 219.29 8.68E-32 46021000 6038.7 5441.1 5880.5 5673.2 6378.5 6156.9 5779.8 5731.3 6553.9 5847 FALSE FALSE TRUE 5330.85274 5608.733842 6198.417618 5904.577618 5907.970763 6039.467391 6002.728822 6383.728025 6283.745468 5812.221784 0.917179856 0.964989646 1.066445474 1.015889936 1.016473731 1.03909789 1.032776973 1.098328361 1.081126237 1 12.50487404 -6.776272392 22.5812777 0.960105116 1.041421596 0.119216958 0.048294012 44.06396465 67081.28141 0.006063821 0.007994368 1.67E-07 6.776272392 0.08131648 RS(ph)ASPHDVDLCLVSPCEFEHR ddPTM_HeLa_CUDC101_4h_R1 4 RSASPHDVDLCLVSPCEFEHR 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHR;RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHR;RS(0.674)AS(0.326)PHDVDLCLVSPCEFEHR;RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHR ;;; 106.12 5.63E-05 32570200 7415.33 5866.14 5213.13 5264.94 8656.9 7171.03 7384.57 7209.28 7307.51 2033.38 TRUE FALSE FALSE 6546.116258 6046.86882 5494.967577 5479.66701 8018.297734 7034.254551 7669.395339 8029.955294 7006.291345 2021.285365 3.238590835 2.991595805 2.718551112 2.71098139 3.966930089 3.480089784 3.794315969 3.972697488 3.466255416 1 10.9810573 -9.355703 0.312343536 2.28E-18 3.715692354 0.02538236 0.825978986 1.121400465 0.138723892 1.513222426 0.223670168 4.41E-10 9.355703 3.715692354 AAAASAAEAGIATTGTEGERDS(ph)DDALLK ddPTM_HeLa_CUDC101_4h_R1 1 AAAASAAEAGIATTGTEGERDSDDALLK 28 1 Q5VWC4 Q5VWC4 PSMD4 1 0 AAAASAAEAGIAT(0.262)T(0.262)GT(0.075)EGERDS(0.402)DDALLK 60.8 0.0013137 11622000 3806.3 3053.8 3404.8 3477.7 3752 3445 3904.5 3628.1 3848.4 4322.2 TRUE FALSE FALSE 3360.131284 3147.883958 3588.873787 3619.535638 3475.222435 3379.292365 4055.097873 4041.108239 3689.767323 4296.491362 0.782064015 0.732663863 0.835303387 0.842439873 0.808851256 0.786523719 0.943816135 0.940560075 0.858786161 1 12.06894328 -9.355634213 1.098745679 0.999249562 0.829015857 0.102851125 0.075692799 0.353674864 0.769156161 0.045589893 0.012086196 4.41E-10 9.355634213 -0.170233706 MEREDS(ph)S(ph)EEEEEEIDDEEIER ddPTM_HeLa_CUDC101_4h_R1 4 MEREDSSEEEEEEIDDEEIER 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER ;;; 112.55 2.07E-05 67194000 5396.9 5092.28 4637.69 4927.59 4991.31 5007.66 4781.19 4514.95 5544.7 5977.5 TRUE FALSE FALSE 4764.283563 5249.167111 4888.41755 5128.558419 4623.111005 4912.147229 4965.6021 5028.913658 5316.145119 5941.945564 0.80180532 0.883408819 0.822696455 0.863110973 0.778046678 0.826690042 0.835686232 0.846341254 0.894680886 1 12.53671967 -9.355513263 0.798730913 1.014326332 0.829794364 0.477251348 0.042477445 0.232091247 0.23114922 0.028334888 0.005479649 4.41E-10 9.355513263 -0.184531969 VTDMADYTY(ph)STVPRR ddPTM_HeLa_CUDC101_4h_R1 1 VTDMADYTYSTVPRR 15 1 A0A1B0GW36;Q9H0J4-3;Q9H0J4 A0A1B0GW36 QRICH2 Glutamine-rich protein 2 1 0 VT(0.004)DMADY(0.041)T(0.118)Y(0.561)S(0.138)T(0.138)VPRR 67.118 0.015552 874700000 6742.2 5162.9 4204.3 5284.5 3946.7 4765 4597.4 4906.9 4449.2 1141.7 TRUE FALSE FALSE 5951.889537 5321.962829 4431.597175 5500.024752 3655.559804 4674.115564 4774.723258 5465.481662 4265.802093 1134.909118 5.244375469 4.689329521 3.904803571 4.846224835 3.221015452 4.118493271 4.207141509 4.815787958 3.758716911 1 10.14836106 -9.355424262 1.012052161 0.945009926 4.398115835 0.254237363 0.989633748 0.175035644 0.312736563 0.444575722 0.10869949 4.41E-10 9.355424262 3.453105909 QVHPDTGIS(ph)SK ddPTM_HeLa_CUDC101_4h_R1 1 QVHPDTGISSK 11 0 O60814;P57053;P58876;P62807;Q16778;Q5QNW6;Q5QNW6-2;Q8N257;Q93079;U3KQK0;Q99877;Q99879;Q99880 O60814;P58876;P62807;Q16778;Q5QNW6;Q8N257;Q93079;U3KQK0;Q99879;Q99880 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST2H2BF;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 2-F;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 1 0 QVHPDTGIS(0.621)S(0.379)K 113.59 0.0038245 11400000 4094 3102.3 3554.3 3658.7 4568.6 4321.6 3708.8 3905.6 3821.7 4747.1 TRUE FALSE FALSE 3614.107526 3197.878186 3746.456209 3807.9176 4231.58348 4239.17268 3851.849658 4350.197717 3664.167908 4718.864038 0.765885073 0.677679662 0.793931798 0.806956414 0.896737741 0.89834601 0.816266294 0.921873926 0.776493639 1 12.20422389 -9.355385892 1.125846997 0.998126117 0.817311708 0 0.096162996 0.35182179 0.810381598 0.048541448 0.013181232 4.41E-10 9.355385892 -0.18081441 DLLVQYATGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DLLVQYATGKK 11 1 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 0 1 ; DLLVQYATGK(1)K;DLLVQYATGK(1)K 167.18 0.00028299 873820 824.97 915.14 880.101 729.34 985.14 1316.87 1081.82 1141.73 450.42 870.14 FALSE TRUE FALSE 728.2682672 943.3343787 927.6819222 759.0856377 912.4681849 1291.752899 1123.54616 1271.699928 431.853497 864.9643686 0.841963315 1.0906049 1.072508829 0.877591801 1.054919969 1.49341747 1.298950801 1.47023389 0.499273164 1 9.756496893 -5.382568056 4.215519269 0.947254013 1.407444939 0.653924184 0.167654924 0.070048955 2.072419286 0.014361202 0.033378716 4.14E-06 5.382568056 0.460190926 AATESVPCS(ph)PSPLAGEIR ddPTM_HeLa_CUDC101_4h_R1 3 AATESVPCSPSPLAGEIR 18 0 J3QKZ5;J3QS16;Q8N9M1-2;Q8N9M1;J9JIE4 J3QKZ5 C19orf47 Uncharacterized protein C19orf47 1 0 AATES(0.061)VPCS(0.934)PS(0.005)PLAGEIR;AATES(0.011)VPCS(0.979)PS(0.009)PLAGEIR;AATES(0.019)VPCS(0.978)PS(0.003)PLAGEIR ;; 180.02 2.22E-08 22161100 4787.4 4011.82 3594.5 3371.34 4151.3 3748.63 3004.92 2460.02 3674.6 1595.26 TRUE FALSE FALSE 4226.228229 4135.419419 3788.829543 3508.837817 3845.06687 3677.131128 3120.820771 2740.058733 3523.131433 1585.771323 2.665093112 2.607828355 2.389266024 2.212701016 2.424729729 2.318828116 1.968014383 1.727902816 2.221714684 1 10.63096903 -9.355268211 1.053855605 0.992389522 2.319548623 0.05604375 0.453516428 0.213815304 0.421129145 0.211812428 0.053925835 4.41E-10 9.355268211 1.327159102 DLMVGDEASELR ddPTM_HeLa_CUDC101_4h_R1 2 DLMVGDEASELR 12 0 P61160 P61160 ACTR2 Actin-related protein 2 0 0 ; ; 187.16 4.59E-10 31643000 5616.8 4298.5 4729.8 4446.1 5186.3 5001 4728.4 4339.2 5158.7 4928.7 FALSE FALSE TRUE 4958.407219 4430.93169 4985.507295 4627.431176 4803.716982 4905.614257 4910.775972 4833.156988 4946.056203 4899.383873 1.012047095 0.904385491 1.017578419 0.94449247 0.980473689 1.001271667 1.00232521 0.98648261 1.009526163 1 12.25838462 VEMT(ph)TRGGY(ph)T(ph)APGK ddPTM_HeLa_CUDC101_4h_R1 1 VEMTTRGGYTAPGK 14 1 P48751-2;P48751;P48751-3 P48751-2 SLC4A3 Anion exchange protein 3 3 0 VEMT(0.825)T(0.179)RGGY(0.998)T(0.998)APGK 53.124 0.0031423 0 568.63 584.98 472.53 505.92 591.6 607.34 426.36 464.77 493.08 785.67 TRUE FALSE FALSE 501.9760534 603.0025404 498.0764011 526.5536044 547.9588466 595.7560014 442.804848 517.6775381 472.7550337 780.9967999 0.642737657 0.772093484 0.637744484 0.674207122 0.701614714 0.762814907 0.56697396 0.662842073 0.605322626 1 9.609172827 -9.354166742 0.670395218 1.046385523 0.672471969 0 0.135316489 0.321441469 0.207417568 0.072168856 0.011953141 4.42E-10 9.354166742 -0.373913555 DLNHVCVISETGK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 2 DLNHVCVISETGKAK 15 1 P00492 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase 0 1 ; DLNHVCVISETGK(1)AK;DLNHVCVISETGK(1)AK 169.15 7.19E-07 3910900 3268.1 2897.8 3335 3065.7 3764.4 2855 3071.9 3283.8 3650.4 2282.7 FALSE TRUE FALSE 2885.018272 2987.077783 3515.300188 3190.732497 3486.707712 2800.545632 3190.384212 3657.614518 3499.928967 2269.122399 1.271424703 1.316402229 1.549189321 1.40615266 1.536588645 1.234197694 1.405999171 1.611907106 1.542415239 1 11.14791872 -8.154095894 0.499471958 0.992944124 1.460108485 0 0.194931953 0.344064447 0.198012488 0.068180359 0.03584861 7.01E-09 8.154095894 0.467164361 DLPEHAVLK ddPTM_HeLa_CUDC101_4h_R1 1 DLPEHAVLK 9 0 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;A0A1X7SBS1;Q5RI18;A0A1W2PQL0;A0A1W2PP34;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQD4 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 122.33 0.0047501 7742900 8884.7 7424 5965.2 7540.3 7447.5 7614.1 6881.9 6976.6 6453.7 5722.6 FALSE FALSE TRUE 7843.248934 7652.72464 6287.696756 7847.826026 6898.112763 7468.873728 7147.337188 7770.787944 6187.675754 5688.561721 1.378775395 1.34528287 1.105322762 1.379580008 1.212628622 1.312963469 1.256440123 1.366037379 1.087739935 1 12.47384822 -9.382844703 1.040547676 0.995341327 1.296114381 0.575044878 0.085189001 0.262255516 0.49545953 0.059335638 0.014331741 4.14E-10 9.382844703 0.300773054 DLPEHAVLK(ac)MK ddPTM_HeLa_CUDC101_4h_R1 2 DLPEHAVLKMK 11 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;A0A1X7SBS1;Q5RI18;A0A1W2PQL0;A0A1W2PP34;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQD4 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 1 ; DLPEHAVLK(1)MK;DLPEHAVLK(1)MK 123.79 0.0016865 3281500 7055.4 6463.7 6497.2 6987.3 7606.9 7481.2 6845.2 7893.4 6658.8 6795.2 FALSE TRUE FALSE 6228.376707 6662.838936 6848.458285 7272.272296 7045.754142 7338.508575 7109.221657 8791.95275 6384.321446 6754.781848 0.922069261 0.98638847 1.013868166 1.076610979 1.04307649 1.086416814 1.052472429 1.301589444 0.94515583 1 12.72169346 -1 0.4370668 0.96752546 7.101353113 0.800090544 0.044727474 25.18902708 0.2790046 0.011085809 137.9709053 0.1 1 6.133827653 DLPEWEPR ddPTM_HeLa_CUDC101_4h_R1 1 DLPEWEPR 8 0 O94964-2;H0YDM2;O94964;X6R3R3;O94964-4 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 0 0 85.064 0.0020886 0 4855.1 3827.7 3747.4 4125.5 4247.4 4042.1 3717.3 3812.5 4068.4 3966.9 FALSE FALSE TRUE 4285.992538 3945.6269 3949.995779 4293.755722 3934.077764 3965.003677 3860.677506 4246.499589 3900.69883 3943.304702 1.086903717 1.000588896 1.00169682 1.088872417 0.9976601 1.005502739 0.979046206 1.076888526 0.989195389 1 11.94518948 GPKPEPPGSGS(ph)PAPPR ddPTM_HeLa_CUDC101_4h_R1 1 GPKPEPPGSGSPAPPR 16 1 Q9UKJ3;Q9UKJ3-2 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 1 0 GPKPEPPGS(0.382)GS(0.618)PAPPR 88.282 0.0056048 95285000 4797 4463.6 3916.7 4068.3 4113.2 3983.4 4427.5 4042 3995.5 4719.5 TRUE FALSE FALSE 4234.702932 4601.118225 4128.448649 4234.222859 3809.777431 3907.423282 4598.270158 4502.124942 3830.803799 4691.428204 0.902646859 0.980750003 0.879998258 0.902544529 0.812071989 0.832885661 0.980142924 0.959649119 0.816553858 1 12.19581147 -9.353794669 0.473174606 1.026304356 0.898859617 0 0.078507059 1.909388455 0.543941727 0.11726438 0.015943827 4.43E-10 9.353794669 -0.12744474 LPNLSS(ph)PSAEGPPGPPSGPAPR ddPTM_HeLa_CUDC101_4h_R1 1 LPNLSSPSAEGPPGPPSGPAPR 22 0 O60784-3;O60784-4;O60784;O60784-2 O60784-3 TOM1 Target of Myb protein 1 1 0 LPNLS(0.224)S(0.766)PS(0.011)AEGPPGPPSGPAPR 147.28 6.77E-11 0 680.43 639.67 684.81 650.03 776.87 738.97 510.09 494.02 882.44 888.78 TRUE FALSE FALSE 600.6710269 659.3774745 721.8329 676.5410331 719.5618478 724.8753785 529.7643422 550.2572399 846.0654497 883.493497 0.679881662 0.746329743 0.817021181 0.765756664 0.814450644 0.820464871 0.599624495 0.622819796 0.957636307 1 9.787075706 -9.353628472 0.89603498 1.013100288 0.734391064 0.626615374 0.07550713 0.360874217 0.47887635 0.070293616 0.015256216 4.43E-10 9.353628472 -0.278709224 T(ph)TPNSGDVQVTEDAVRR ddPTM_HeLa_CUDC101_4h_R1 2 TTPNSGDVQVTEDAVRR 17 1 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 1 0 T(0.588)T(0.334)PNS(0.078)GDVQVTEDAVRR;T(0.815)T(0.112)PNS(0.072)GDVQVTEDAVRR ; 120.9 0.0030004 39641000 3788.5 3093.16 2908.76 2626.4 3525.6 2927 3056.76 3252.8 3382 2345 TRUE FALSE FALSE 3344.417773 3188.456593 3066.016364 2733.515944 3265.523512 2871.172352 3174.660257 3623.085604 3242.592529 2331.051836 1.434724755 1.367818829 1.315293087 1.172653436 1.400879835 1.23170678 1.361900327 1.554270715 1.391042652 1 11.18676537 -9.353589035 0.978937586 0.991351368 1.351611078 0 0.155159724 0.298298717 0.491997114 0.077974005 0.018490385 4.43E-10 9.353589035 0.36025971 KPPLS(ph)PAQTNPVVQR ddPTM_HeLa_CUDC101_4h_R1 2 KPPLSPAQTNPVVQR 15 1 Q8IY33-4;Q8IY33-2;Q8IY33 Q8IY33-4 MICALL2 MICAL-like protein 2 1 0 KPPLS(0.994)PAQT(0.006)NPVVQR;KPPLS(0.961)PAQT(0.039)NPVVQR ; 95.755 0.00091537 8324700 2416.7 2199.28 1941.86 2160.93 2336.86 2206.95 2016.76 2210.68 2442.94 2431.8 TRUE FALSE FALSE 2133.418089 2267.03721 2046.842825 2249.062066 2164.474493 2164.856106 2094.547109 2462.334875 2342.240979 2417.335545 0.882549422 0.937824794 0.846735088 0.930388861 0.895396792 0.895554657 0.866469329 1.01861526 0.968934984 1 11.23920203 -9.353187268 0.966386486 1.002638028 0.904762235 0.290114162 0.04584232 0.4555963 0.728273327 0.03218267 0.00753809 4.43E-10 9.353187268 -0.097875792 DLPSPLPTK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 DLPSPLPTKR 10 1 H7C4E7;Q9Y534 H7C4E7 CSDC2 Cold shock domain-containing protein C2 0 1 DLPSPLPTK(1)R 71.349 0.038566 0 507 313.06 474.18 412.87 813.31 525.08 706.29 526.42 445.12 494.41 FALSE TRUE FALSE 447.5702286 322.7050075 499.8156051 429.7086232 753.3137416 515.0649738 733.5318419 586.3455249 426.7719652 491.4692273 0.910678032 0.656612845 1.016982503 0.874334748 1.532779063 1.048010629 1.492528527 1.193046263 0.868359485 1 8.940957277 -5.777748482 24.99999451 0.931449767 1.309973776 0.62253785 0.161396917 120.619223 184895.3761 0.022020361 0.040000079 1.67E-06 5.777748482 0.37852401 CSGPGLS(ph)PGMVR ddPTM_HeLa_CUDC101_4h_R1 6 CSGPGLSPGMVR 12 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 1 0 CSGPGLS(1)PGMVR;CS(0.004)GPGLS(0.996)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR;CSGPGLS(1)PGMVR ;;;;; 166.62 2.64E-05 4718763000 25510.7 22848.9 22859.1 22784.3 24014.6 24004.7 21085.6 24771.2 24992.5 27695.4 TRUE FALSE FALSE 22520.37442 23552.84753 24094.93209 23713.54224 22243.0908 23546.85034 21898.87866 27591.05328 23962.29857 27530.66653 0.818010505 0.85551316 0.875203369 0.861350095 0.807938696 0.855295324 0.795435833 1.002193436 0.870385704 1 14.74875192 -9.353156399 0.98097269 1.003504615 0.852912757 0.044425008 0.066907114 0.354600924 0.587935372 0.038770695 0.009218814 4.43E-10 9.353156399 -0.150591858 GGPGS(ph)AVSPYPTFNPSSDVAALHK ddPTM_HeLa_CUDC101_4h_R1 1 GGPGSAVSPYPTFNPSSDVAALHK 24 0 P04083;Q5T3N1;Q5T3N0 P04083 ANXA1 Annexin A1;Annexin 1 0 GGPGS(0.959)AVS(0.036)PY(0.005)PT(0.001)FNPSSDVAALHK 65.801 0.0017321 11917000 1394.4 1308.2 1326.6 1414.5 1524.7 1317 1373.5 1403.9 1463 2009.1 TRUE FALSE FALSE 1230.950546 1348.504091 1398.320009 1472.189424 1412.225919 1291.880419 1426.476355 1563.714301 1402.694521 1997.149784 0.616353643 0.675214299 0.700157805 0.737145224 0.707120683 0.646862058 0.71425607 0.782972972 0.702348182 1 10.96372682 -9.352996496 1.006899262 1.005209289 0.692003415 0.00612548 0.100181416 0.161707971 0.285664636 0.03714323 0.009067167 4.44E-10 9.352996496 -0.313205874 TCFS(ph)PNR ddPTM_HeLa_CUDC101_4h_R1 2 TCFSPNR 7 0 O00303 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F 1 0 T(0.001)CFS(0.999)PNR;TCFS(1)PNR ; 114.51 0.006037 51764300 10699 8320.9 7741 9247.3 8946 8307.1 7661.1 6400 7294.4 4646.2 TRUE FALSE FALSE 9444.879439 8577.257066 8159.501875 9624.444864 8286.071403 8148.655908 7956.591193 7128.55013 6993.721745 4618.564196 2.044981739 1.857126307 1.766674995 2.083860797 1.794079513 1.764326653 1.72274128 1.543455894 1.514263188 1 12.17322871 -9.352743282 1.007955017 0.98613046 1.838674758 0.476275125 0.211877444 0.191615903 0.339393538 0.119837304 0.029295202 4.44E-10 9.352743282 0.852544298 DLQELGDSDKYFIEDGR ddPTM_HeLa_CUDC101_4h_R1 1 DLQELGDSDKYFIEDGR 17 1 P32004-3;P32004-2;P32004;H0Y5C3 P32004-3 L1CAM Neural cell adhesion molecule L1 0 0 72.315 0.028051 6566900 1011 837.84 929.01 1031.1 912.88 922.09 877.61 977.99 868.32 936.02 FALSE FALSE TRUE 892.4921126 863.6528573 979.2350907 1073.152715 845.5386611 904.5026696 911.4597117 1089.320428 832.5274821 930.4525114 0.959202218 0.928207347 1.052428876 1.153366455 0.90873919 0.972110514 0.979587567 1.170742639 0.894755479 1 9.861788709 -6.742150051 24.96707091 0.976256542 1.032942251 0.207168602 0.081024717 416.9231136 539641.7647 0.012039631 0.017010867 1.81E-07 6.742150051 0.056685708 DLQHPNEFIR ddPTM_HeLa_CUDC101_4h_R1 1 DLQHPNEFIR 10 0 E9PP73;P53618;E9PP63;E9PKQ1 E9PP73 COPB1 Coatomer subunit beta 0 0 84.198 0.034433 3692200 2338.6 1882.9 2130.1 2128.4 2513.6 2337.1 1944.6 2057.7 2016.6 2250.4 FALSE FALSE TRUE 2064.472853 1940.909917 2245.259649 2215.205352 2328.176736 2292.523711 2019.603873 2291.94025 1933.474894 2237.014521 0.92286967 0.867634027 1.003685773 0.99025077 1.040751731 1.024813961 0.902812143 1.02455314 0.864310391 1 11.12735891 NSNSPPSPSS(ph)MNQR ddPTM_HeLa_CUDC101_4h_R1 1 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 NSNS(0.007)PPS(0.096)PS(0.21)S(0.687)MNQR 135.61 0.00066147 131190000 1151.3 1098.6 1001 971.05 1016.6 1176.6 1039.4 1154.6 1301.7 1338.9 TRUE FALSE FALSE 1016.346359 1132.446564 1055.117088 1010.653616 941.6074434 1154.158315 1079.490006 1286.034997 1248.043375 1330.936163 0.763632688 0.850864673 0.792763107 0.75935544 0.707477541 0.867177816 0.811075719 0.966263471 0.937718434 1 10.37822566 -9.352587171 0.964779029 1.005377287 0.808152969 0.429230095 0.069487461 0.369752222 0.588808576 0.052582308 0.012306491 4.44E-10 9.352587171 -0.197224317 GPSPAPAS(ph)SPKR ddPTM_HeLa_CUDC101_4h_R1 1 GPSPAPASSPKR 12 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 GPSPAPAS(0.585)S(0.415)PKR 97.631 0.0072478 38666000 2158.6 1919.7 1785.1 2130.2 1715.9 2018.7 1798.5 2749.1 2465.9 2498.5 TRUE FALSE FALSE 1905.57218 1978.843682 1881.607906 2217.078764 1589.321476 1980.196661 1867.868747 3062.046432 2364.254558 2483.638811 0.767250122 0.796751795 0.757601265 0.892673586 0.639916508 0.797296552 0.752069399 1.232887173 0.951931717 1 11.27823967 -9.35216052 1.045899892 1.001274338 0.814896493 0.124875078 0.149459379 0.71230923 1.379384903 0.098691522 0.025049295 4.44E-10 9.35216052 -0.186377845 NQSPTEAEKPASSSLPS(ph)SPPPQLLTR ddPTM_HeLa_CUDC101_4h_R1 2 NQSPTEAEKPASSSLPSSPPPQLLTR 26 1 Q99567;I3L2W3 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 NQS(0.002)PT(0.004)EAEKPAS(0.015)S(0.008)S(0.017)LPS(0.466)S(0.466)PPPQLLT(0.023)R;NQSPTEAEKPASS(0.001)S(0.001)LPS(0.499)S(0.499)PPPQLLTR ; 112.42 5.41E-08 116600000 3449.98 2884.72 2863.07 3056.07 3464.25 3030.4 2759.06 3358.4 3348.23 3335.4 TRUE FALSE FALSE 3045.578574 2973.594804 3017.856225 3180.709744 3208.699179 2972.600169 2865.477868 3740.706681 3210.214542 3315.560892 0.918571148 0.89686026 0.910209863 0.959327802 0.967769642 0.89656027 0.864251317 1.128227411 0.968226688 1 11.69503724 -9.352057543 1.11426974 0.99945298 0.936179532 0.040707883 0.069666297 0.871896197 1.962349441 0.041891607 0.011314759 4.45E-10 9.352057543 -0.063273448 ESMCSTPAFPVS(ph)PETPYVK ddPTM_HeLa_CUDC101_4h_R1 2 ESMCSTPAFPVSPETPYVK 19 0 Q68CZ2;Q68CZ2-2;E9PCX8 Q68CZ2 TNS3 Tensin-3 1 0 ESMCSTPAFPVS(0.987)PET(0.013)PYVK;ESMCSTPAFPVS(0.993)PET(0.007)PYVK ; 116.48 7.52E-05 10052700 6268.9 5723.6 4415.7 4714.6 5793.5 5902.1 4473.4 3254.6 5640.7 3534.9 TRUE FALSE FALSE 5534.069045 5899.937332 4654.426099 4906.881766 5366.125047 5789.527276 4645.940536 3625.090508 5408.187959 3513.874258 1.574919488 1.67904054 1.324585275 1.396430665 1.527124949 1.647619366 1.322170401 1.031650606 1.539095472 1 11.77884685 -9.351499445 1.071762291 0.99965629 1.454946853 0 0.243344043 0.372859746 0.76558905 0.127235347 0.033112399 4.45E-10 9.351499445 0.455290563 QTPMASS(ph)PRPK ddPTM_HeLa_CUDC101_4h_R1 2 QTPMASSPRPK 11 1 Q5SSJ5;B0QZK4;Q5SWC8;Q5SSJ5-2 Q5SSJ5 HP1BP3 Heterochromatin protein 1-binding protein 3 1 0 QTPMAS(0.202)S(0.798)PRPK;QT(0.001)PMAS(0.231)S(0.768)PRPK ; 99.991 0.0077632 60923000 6965.8 5896.6 6654.6 7067.8 7068.1 6482.1 5943 5699.2 7458.9 7965.4 TRUE FALSE FALSE 6149.279483 6078.267257 7014.367805 7356.055434 6546.700345 6358.464742 6172.223501 6347.973891 7151.440985 7918.021447 0.77661819 0.767649759 0.885873807 0.929026965 0.82681013 0.80303707 0.779515886 0.801712137 0.903185352 1 12.95092426 -9.350533537 1.009726266 1.002824646 0.820414698 0.430863042 0.055948534 0.299109999 0.532528434 0.040012749 0.009829803 4.46E-10 9.350533537 -0.182409949 GLNPDGTPALSTLGGFS(ph)PASKPS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58-6;Q9UK58 Q9UK58-6 CCNL1 Cyclin-L1 2 0 GLNPDGTPALS(0.002)T(0.002)LGGFS(0.968)PAS(0.059)KPS(0.524)S(0.445)PR 93.187 7.24E-06 200680000 2053.1 2049.1 1704 1723.2 2395.5 1937 1952.3 1755.6 2062.1 2560.3 TRUE FALSE FALSE 1812.43873 2112.230342 1796.123394 1793.479544 2218.788738 1900.054952 2027.600865 1955.450408 1977.099365 2545.071222 0.712136743 0.829929758 0.705726181 0.704687369 0.871798289 0.746562586 0.796677455 0.768328364 0.776834592 1 11.31349031 -9.350462096 0.946085803 1.007727572 0.764782512 0.032722416 0.085393105 0.239664946 0.364153257 0.041612558 0.009579786 4.46E-10 9.350462096 -0.24294506 LES(ph)ES(ph)T(ph)SPS(ph)LEMK ddPTM_HeLa_CUDC101_4h_R1 1 LESESTSPSLEMK 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 4 0 LES(0.989)ES(0.991)T(0.965)S(0.259)PS(0.795)LEMK 43.184 0.003374 0 774.69 749.53 632.73 924.26 716.33 841.01 660.14 723.77 883.9 1056.4 TRUE FALSE FALSE 683.8820126 772.6221309 666.9372977 961.9553178 663.487763 824.9691355 685.6018209 806.1610512 847.4652679 1050.116486 0.651243954 0.735748978 0.635107921 0.916046297 0.631823014 0.785597738 0.652881685 0.767687263 0.807020249 1 10.03633365 -9.350412271 0.986594095 1.006099624 0.718090442 0.269454617 0.101407707 0.282430203 0.475390737 0.059123348 0.014195088 4.46E-10 9.350412271 -0.288009182 GS(ph)KSPDLLMYQGPPDTAEIIK ddPTM_HeLa_CUDC101_4h_R1 2 GSKSPDLLMYQGPPDTAEIIK 21 1 P82909 P82909 MRPS36 "28S ribosomal protein S36, mitochondrial" 1 0 GS(0.594)KS(0.405)PDLLMY(0.001)QGPPDTAEIIK;GS(0.611)KS(0.388)PDLLMYQGPPDTAEIIK ; 121.84 4.79E-07 66642000 5732 4930.1 4607.3 4848.7 6028.9 5157.1 4833.2 4994.6 4975.3 5484.2 TRUE FALSE FALSE 5060.103649 5081.990537 4856.384574 5046.450944 5584.160058 5058.73691 5019.618143 5563.165075 4770.216028 5451.579734 0.92819034 0.932205119 0.890821525 0.925685983 1.024319616 0.927939635 0.92076396 1.020468441 0.875015364 1 12.41245863 -9.350156529 1.091958144 0.999759283 0.943414954 0 0.056193375 0.632755682 1.358698796 0.0268718 0.007135679 4.47E-10 9.350156529 -0.056344328 RATY(ph)IGPS(ph)T(ph)VFGSSGK ddPTM_HeLa_CUDC101_4h_R1 1 RATYIGPSTVFGSSGK 16 1 P54198;P54198-2 P54198 HIRA Protein HIRA 3 0 RAT(0.168)Y(0.855)IGPS(0.989)T(0.984)VFGS(0.002)S(0.003)GK 61.732 0.002591 0 969.24 895.94 709.81 695.69 882.19 851.06 613.3 874.39 685.97 644.14 TRUE FALSE FALSE 855.6271565 923.5428494 748.1844757 724.0632452 817.1126013 834.8274485 636.9551864 973.9270232 657.6940263 640.3086266 1.336273042 1.442340164 1.168474771 1.130803514 1.276123056 1.303789163 0.994762775 1.52102749 1.027151594 1 9.322623637 -9.349967911 1.081565595 1.000471291 1.26584767 0.340305475 0.14316111 0.462289811 0.970504467 0.092166625 0.024253316 4.47E-10 9.349967911 0.265376379 AASQGSDS(ph)PLLPAQR ddPTM_HeLa_CUDC101_4h_R1 1 AASQGSDSPLLPAQR 15 0 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 AASQGS(0.006)DS(0.993)PLLPAQR 137.91 0.00049321 11375000 632.88 544.42 629.27 486.02 913.82 755.45 439.09 469.01 854.87 810.28 TRUE FALSE FALSE 558.6947658 561.1929349 663.2902396 505.8419964 846.4093192 741.0410499 456.0258484 522.4002026 819.6318968 805.4604185 0.693634042 0.696735584 0.823492036 0.628015958 1.050839122 0.920021683 0.566167918 0.6485734 1.017594258 1 9.653669884 -9.349948157 1.026703821 1.002745425 0.754756275 0.350080019 0.13827382 0.560532893 1.039152609 0.102547709 0.025635372 4.47E-10 9.349948157 -0.24798915 TGSVQTPPDLES(ph)SEEVDAAEGAPEVVGPK ddPTM_HeLa_CUDC101_4h_R1 2 TGSVQTPPDLESSEEVDAAEGAPEVVGPK 29 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7;H7BZ26 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 TGSVQT(0.004)PPDLES(0.498)S(0.498)EEVDAAEGAPEVVGPK;T(0.003)GS(0.003)VQT(0.049)PPDLES(0.472)S(0.472)EEVDAAEGAPEVVGPK ; 62.284 0.00036044 10133000 4944.9 4609.7 3971.3 3982.4 4745.5 4654.2 4414.9 4676.9 4782 5101.3 TRUE FALSE FALSE 4365.266318 4751.719393 4186.000491 4144.819485 4395.433919 4565.428889 4585.184172 5209.299391 4584.883936 5070.957241 0.860836744 0.937045841 0.825485267 0.817364314 0.866785838 0.900309088 0.904204858 1.027281269 0.904145651 1 12.30804239 -9.349285473 0.967923088 1.002955028 0.887015426 0.03973042 0.06383652 0.536322465 0.862129351 0.044834707 0.010578056 4.47E-10 9.349285473 -0.115939602 KDS(ph)ISEDEMVLR ddPTM_HeLa_CUDC101_4h_R1 1 KDSISEDEMVLR 12 1 Q8N5D0-5;Q8N5D0-3;Q8N5D0-6;Q8N5D0-2;Q8N5D0-4;Q8N5D0 Q8N5D0-5 WDTC1 WD and tetratricopeptide repeats protein 1 1 0 KDS(0.629)IS(0.371)EDEMVLR 70.134 0.029757 20175000 2540.9 2242.7 2108.9 1970.6 2760 2295.1 2486.4 2557.3 2400.2 2850.9 TRUE FALSE FALSE 2243.059554 2311.794929 2222.913513 2050.969586 2556.400299 2251.324791 2582.301281 2848.412695 2301.26274 2833.94272 0.791497844 0.815752172 0.784389006 0.723715963 0.902064915 0.79441436 0.911204472 1.005105952 0.812035728 1 11.46859488 -9.348867547 1.057412357 1.000552997 0.83431127 0 0.095222472 0.439135437 0.874032686 0.054397329 0.014022326 4.48E-10 9.348867547 -0.166241727 VFDKDGNGY(ph)ISAAELR ddPTM_HeLa_CUDC101_4h_R1 2 VFDKDGNGYISAAELR 16 1 P0DP25;P0DP24;P0DP23;E7EMB3;G3V361;A0A590UJI2;Q96HY3 P0DP25 CALM2;CALM1 1 0 VFDKDGNGY(0.981)IS(0.019)AAELR;VFDKDGNGY(0.997)IS(0.003)AAELR ; 122.12 0.001043 30949000 7217.4 4176.4 4528.9 3451.2 2351.38 1497.77 927.86 771.64 4897.9 5279.6 TRUE FALSE FALSE 6371.387313 4305.069934 4773.746033 3591.954853 2177.923382 1469.202533 963.647871 859.4803785 4696.006489 5248.196704 1.214014579 0.82029508 0.909597392 0.684416964 0.41498509 0.279944258 0.183615044 0.1637668 0.894784771 1 12.35760608 -5.925040898 0.888917211 1.0951965 0.146086742 0.913482066 0.103735338 0.104727463 0.158863669 0.018640587 0.054750606 1.19E-06 5.925040898 -0.949109758 down DLSLEEIQK ddPTM_HeLa_CUDC101_4h_R1 1 DLSLEEIQK 9 0 P16949;P16949-2;A2A2D0;E5RGX5;Q93045;Q93045-2 P16949 STMN1;STMN2 Stathmin;Stathmin-2 0 0 126.07 0.023464 11744000 2346.8 2119.9 2243.6 2014.2 2350.3 2098.5 2332.8 2179.3 2141.9 2287.4 FALSE FALSE TRUE 2071.711662 2185.211606 2364.895803 2096.347782 2176.923051 2058.474609 2422.776877 2427.382703 2053.609975 2273.794443 0.911125308 0.961041845 1.040065785 0.921960113 0.957396592 0.905303738 1.065521505 1.067547117 0.903164304 1 11.15088612 -4.742335594 24.51724996 0.957821862 1.066534468 0.544471816 0.042151985 122.4526682 157148.9434 0.006098877 0.022740216 1.81E-05 4.742335594 0.108712606 DLSLEEIQK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DLSLEEIQKK 10 1 P16949;P16949-2;A2A2D0;E5RGX5;Q93045;Q93045-2 P16949 STMN1;STMN2 Stathmin;Stathmin-2 0 1 ; DLSLEEIQK(1)K;DLSLEEIQK(1)K 198.61 4.63E-08 2520910 1356.78 945.84 825.22 545.324 1498.82 1165.62 1414.04 1013.2 1283.19 1171.69 FALSE TRUE FALSE 1197.740305 974.9802093 869.8338894 567.5646698 1388.255035 1143.387741 1468.579996 1128.538593 1230.296365 1164.720736 1.028349774 0.837093545 0.746817553 0.487296785 1.19192094 0.981684026 1.260885937 0.96893492 1.05630159 1 10.18576837 -3.173426318 13.15213298 0.975623372 1.032835131 0 0.211690712 0 0 0.027971012 0 0.00067077 3.173426318 0.057211759 MPLLELGGETTPPLS(ph)TERSPEAVGSECPSR ddPTM_HeLa_CUDC101_4h_R1 1 MPLLELGGETTPPLSTERSPEAVGSECPSR 30 1 Q9Y4K1;A0A0J9YWL0 Q9Y4K1 AIM1 Absent in melanoma 1 protein 1 0 MPLLELGGET(0.013)T(0.013)PPLS(0.315)T(0.315)ERS(0.315)PEAVGS(0.022)ECPS(0.005)R 50.499 0.011545 4363100 450.78 371.11 348.17 369.72 369.03 279.14 338.77 265.84 301.44 175.1 TRUE FALSE FALSE 397.9402517 382.5434592 366.9931234 384.7987797 341.8073921 273.8158696 351.8364724 296.102151 289.0145156 174.0584974 2.286244324 2.197786749 2.108447038 2.210744005 1.963750102 1.573125551 2.021369124 1.701164582 1.660444735 1 7.443428437 -9.348696291 1.041713233 0.992686468 2.026324109 0.404656284 0.288986072 0.218726851 0.420075773 0.167569152 0.042572578 4.48E-10 9.348696291 1.033637641 VHS(ph)PPASLVPR ddPTM_HeLa_CUDC101_4h_R1 3 VHSPPASLVPR 11 0 Q9BTE3;Q9BTE3-2;Q9BTE3-3 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein 1 0 VHS(1)PPASLVPR;VHS(0.872)PPAS(0.128)LVPR;VHS(0.999)PPAS(0.001)LVPR ;; 92.943 0.020799 39171000 4464.89 3975.55 3689.21 4331.4 5078.3 4800.7 4252.82 3868.2 4401.82 5797.4 TRUE FALSE FALSE 3941.522363 4098.031983 3888.659852 4508.053214 4703.683926 4709.134646 4416.852692 4308.540252 4220.375116 5762.916807 0.683945733 0.71110379 0.674772859 0.782252003 0.816198478 0.817144304 0.766426593 0.747631867 0.732333167 1 12.49258348 -9.348643928 1.043314818 1.001695543 0.747898877 0 0.093549244 0.208567082 0.402048327 0.039253845 0.009988727 4.48E-10 9.348643928 -0.253796666 ACANPAAGS(ph)VILLENLR ddPTM_HeLa_CUDC101_4h_R1 1 ACANPAAGSVILLENLR 17 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 1 0 ACANPAAGS(1)VILLENLR 164.56 2.07E-05 7745100 1219.5 902.84 830.52 1262.1 1160.3 589.82 1028.7 854.03 840.66 595.77 TRUE FALSE FALSE 1076.552059 930.6554303 875.4204234 1313.573893 1074.706981 578.5701662 1068.377304 951.2493231 806.007639 592.2263335 1.817805115 1.571452294 1.478185575 2.218026823 1.814689621 0.976940966 1.804001685 1.60622598 1.36097906 1 9.210004832 -9.348565089 0.948235859 0.978759407 1.668627482 0.24083167 0.317250119 0.485368247 0.742233238 0.239349752 0.05537965 4.48E-10 9.348565089 0.689868075 DLTDGHFENILADNSVNDQTK ddPTM_HeLa_CUDC101_4h_R1 1 DLTDGHFENILADNSVNDQTK 21 0 P36952;P36952-2 P36952 SERPINB5 Serpin B5 0 0 136.68 5.45E-07 6980500 2432.3 1986.1 1753 1887.2 1962.9 1511.5 1674.1 1859 1747.4 2212.4 FALSE FALSE TRUE 2147.189481 2047.289387 1847.772483 1964.168173 1818.100778 1482.670656 1738.670598 2070.621046 1675.371432 2199.240546 0.976332255 0.93090744 0.840186621 0.893112023 0.826694825 0.674173936 0.790577729 0.941516402 0.761795446 1 11.1027897 -6.733552147 0.963927986 0.993471413 0.803526771 0.006895288 0.097780713 0.251780792 0.4669723 0.012837225 0.020480052 1.85E-07 6.733552147 -0.189944643 DLTDYLMK ddPTM_HeLa_CUDC101_4h_R1 3 DLTDYLMK 8 0 P60709;A0A2R8Y793;P63267-2;Q562R1;A0A2R8YEA7;P63267;P68133;P68032;P62736;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63267;P63261 ACTB;ACTG2;ACTBL2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;; ;; 148.38 0.017555 273489000 19548.3 15187.6 11362.3 13198.1 15698.4 14033.2 13521.5 12268.2 13423.7 12345.9 FALSE FALSE TRUE 17256.87791 15655.51195 11976.58031 13736.37557 14540.36031 13765.54009 14043.02878 13664.7623 12870.3694 12272.46604 1.406145909 1.275661461 0.975890279 1.119284056 1.184795318 1.121660475 1.144271147 1.113448777 1.048719089 1 13.58313755 -6.797114575 24.99987988 1.20344024 1.115820542 0.07287651 0.116974925 407.7821675 285757.5609 0.026064697 0.034256404 1.60E-07 6.797114575 -0.087619698 VSSPLSPLSPGIKS(ph)PTIPR ddPTM_HeLa_CUDC101_4h_R1 2 VSSPLSPLSPGIKSPTIPR 19 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 VSSPLSPLSPGIKS(1)PTIPR;VSSPLSPLSPGIKS(0.971)PT(0.029)IPR ; 266.99 9.12E-71 319430000 2884.29 2533 2241.27 2316.72 2743.35 2199.72 2326.28 2587.6 2366 2235.92 TRUE FALSE FALSE 2546.197898 2611.038728 2362.439836 2411.205855 2540.978536 2157.764006 2416.005399 2882.161925 2268.472479 2222.620648 1.145583661 1.174756803 1.062907356 1.084848131 1.143235369 0.970819743 1.087007538 1.296740371 1.020629625 1 11.11804602 -9.348240889 1.052238766 0.999461817 1.115988189 0.231056367 0.079882047 0.629477221 1.238587294 0.054547936 0.014005775 4.48E-10 9.348240889 0.116526372 S(ph)MDLVPDESK ddPTM_HeLa_CUDC101_4h_R1 1 SMDLVPDESK 10 0 R4GN62;A0A087WZG6;A0A087X1S9;Q8TEW8-5;Q8TEW8-2;Q8TEW8;A0A087WYL6;Q8TEW8-6;Q8TEW8-3 R4GN62 PARD3B Partitioning defective 3 homolog B 1 0 S(1)MDLVPDESK 108.35 0.0090036 4184000 1106.8 1020.3 1022.1 815.23 1192 1284.5 985.48 935.22 1219.8 1340.7 TRUE FALSE FALSE 977.0625818 1051.734234 1077.357818 848.4786031 1104.068535 1260.000303 1023.490294 1041.681665 1169.519328 1332.725457 0.733131176 0.789160459 0.808386913 0.636649205 0.828429088 0.945431256 0.767967843 0.781617594 0.877539573 1 10.3801639 -9.348162703 0.997337976 1.003910735 0.784665021 0.322330478 0.081428702 0.354367523 0.612942239 0.056654241 0.013794832 4.49E-10 9.348162703 -0.219245714 DLTQMADELRR ddPTM_HeLa_CUDC101_4h_R1 5 DLTQMADELRR 11 1 P41227;P41227-2;C9JN83 P41227 NAA10 N-alpha-acetyltransferase 10 0 0 ;;;; ;;;; 175.33 1.35E-10 51028300 14948.9 15576.5 13814.3 15064.6 18318.3 16971.7 15458.5 13701.4 15387.6 13955.6 FALSE FALSE TRUE 13196.6126 16056.3935 14561.14284 15678.9995 16966.9955 16647.9931 16054.73952 15261.11199 14753.31662 13872.59147 0.951272344 1.157418463 1.04963394 1.130214173 1.223058831 1.200063675 1.157299237 1.100090926 1.063486707 1 13.7599497 -6.954578133 1.293926941 0.976599268 1.162632745 0.489052488 0.059175054 0.169765876 0.559678331 0.010273876 0.013986548 1.11E-07 6.954578133 0.186033477 TGQAGSLSGS(ph)PKPFSPQLSAPITTK ddPTM_HeLa_CUDC101_4h_R1 1 TGQAGSLSGSPKPFSPQLSAPITTK 25 1 A0A087WVZ6;A0A087WYS3;H7C4X9;A0A087WV57;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-16;Q9ULU4-4;Q9ULU4-12;Q9ULU4-14;Q9ULU4-21;Q9ULU4-8;Q9ULU4-23;Q9ULU4-17;Q9ULU4-6;Q9ULU4-3;Q9ULU4-19 A0A087WVZ6 ZMYND8 Protein kinase C-binding protein 1 1 0 T(0.005)GQAGS(0.069)LS(0.092)GS(0.672)PKPFS(0.107)PQLS(0.049)APIT(0.003)T(0.001)K 49.662 0.021208 90608000 1534.6 1426.1 1475.1 1149.9 1761.3 1453.7 1369 1407.3 2058.9 1858.5 TRUE FALSE FALSE 1354.716514 1470.036451 1554.848368 1196.797892 1631.372408 1425.973095 1421.802789 1567.501343 1974.031271 1847.445559 0.733291711 0.795713001 0.841620669 0.647812265 0.883042209 0.771862038 0.769604702 0.848469572 1.068519319 1 10.85131614 -9.348079409 0.960189567 1.006158043 0.782553024 0.674041315 0.067425102 0.289072891 0.45591053 0.046433158 0.010886659 4.49E-10 9.348079409 -0.223605019 CALQNS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 CALQNSPR 8 0 E9PKY2;A0A0C4DFM7;Q5TAX3;X6R5G7;E9PRG2;Q5TAX3-2 E9PKY2 ZCCHC11 Terminal uridylyltransferase 4 1 0 CALQNS(1)PR 117.53 0.0081379 18347000 3462.7 2788 3231.8 2719.3 3181.2 2943.4 2725.4 2258.9 3175.2 2472.3 TRUE FALSE FALSE 3056.807555 2873.894975 3406.520884 2830.204808 2946.529214 2887.259549 2830.519591 2516.044045 3044.316912 2457.59465 1.243820886 1.169393405 1.386119914 1.151615792 1.198948417 1.174831476 1.151743877 1.023783172 1.238738419 1 11.26303126 -9.347712622 1.043405056 0.998765661 1.194472401 0 0.112169351 0.415252894 0.800923213 0.060242237 0.015351159 4.49E-10 9.347712622 0.19570674 DLVILLYETALLSSGFSLEDPQTHANR ddPTM_HeLa_CUDC101_4h_R1 4 DLVILLYETALLSSGFSLEDPQTHANR 27 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ;;; ;;; 137.86 1.56E-11 88006200 2915.75 3097.26 2999.48 2707.47 4470.67 3287.57 3015 2723.54 3523.56 3954.882 FALSE FALSE TRUE 2573.970205 3192.682909 3161.640962 2817.892329 4140.877581 3224.86508 3131.28956 3033.576785 3378.317365 3931.358186 0.65472798 0.812106849 0.804210864 0.716773236 1.053294405 0.820292868 0.796490529 0.771635817 0.859325761 1 11.9408121 -9.609488872 1.431252826 0.999358363 0.7876774 0.125364918 0.106120519 0.373021241 1.378289167 0.074618664 0.017403872 2.46E-10 9.609488872 -0.211680963 TSSTCSNESLS(ph)VGGTSVTPR ddPTM_HeLa_CUDC101_4h_R1 1 TSSTCSNESLSVGGTSVTPR 20 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 0 TSST(0.002)CS(0.037)NES(0.214)LS(0.747)VGGTSVTPR 184.15 1.09E-11 47474000 1900.2 1646.1 1523.6 1438.2 1477.3 1321.2 1203.8 1930.1 1789.9 1071.9 TRUE FALSE FALSE 1677.461437 1696.81439 1605.970425 1496.856012 1368.322522 1296.000311 1250.230969 2149.814782 1716.119564 1065.524291 1.574306143 1.592468988 1.507211462 1.404807028 1.284177689 1.216302924 1.173348163 2.017612175 1.610586993 1 10.05734777 -9.347630627 1.053704529 0.99814741 1.457371317 0 0.294462776 0.45899761 0.90636048 0.156783314 0.040345981 4.49E-10 9.347630627 0.459223908 EISS(ph)PARPCSFEEAMK ddPTM_HeLa_CUDC101_4h_R1 2 EISSPARPCSFEEAMK 16 1 O94916-2;O94916;O94916-4;O94916-5 O94916-2 NFAT5 Nuclear factor of activated T-cells 5 1 0 EIS(0.207)S(0.792)PARPCS(0.001)FEEAMK;EIS(0.292)S(0.708)PARPCSFEEAMK ; 90.872 0.0046724 106482000 6950.7 5466.8 5964.4 5979 6207.9 5078 5097.6 4629.1 6618.5 4030.3 TRUE FALSE FALSE 6135.949483 5635.225628 6286.853505 6222.849463 5749.955585 4981.145611 5294.21614 5156.058033 6345.682629 4006.327596 1.53156459 1.406581337 1.569231011 1.553255273 1.435218525 1.243319596 1.321463613 1.286978638 1.583915063 1 11.96806468 -9.347373022 1.022690253 0.995134123 1.42628529 0 0.207630804 0.272719101 0.501356024 0.086521676 0.021624648 4.49E-10 9.347373022 0.431151167 QESCLGNS(ph)PPFEKESEPESPMDVDNSK ddPTM_HeLa_CUDC101_4h_R1 1 QESCLGNSPPFEKESEPESPMDVDNSK 27 1 Q86W56-3;Q86W56-2;Q86W56 Q86W56-3 PARG Poly(ADP-ribose) glycohydrolase 1 0 QES(0.11)CLGNS(0.502)PPFEKES(0.325)EPES(0.062)PMDVDNSK 46.695 0.024364 6675100 1388.3 1121.1 865.66 929.91 1554.8 1297.9 1039.6 804.01 1145.2 682.66 TRUE FALSE FALSE 1225.565579 1155.639762 912.4601981 967.8357492 1440.105502 1273.14472 1079.69772 895.5352485 1097.994371 678.599508 1.806021909 1.702977601 1.344622546 1.426225245 2.122172923 1.876135637 1.591067644 1.319681547 1.618030014 1 9.406416574 -9.346989126 0.925487598 0.974504741 1.664837604 0.020951382 0.302174793 0.420783532 0.606679267 0.205406313 0.046492419 4.50E-10 9.346989126 0.690332863 LKDLFDYS(ph)PPLHK ddPTM_HeLa_CUDC101_4h_R1 2 LKDLFDYSPPLHK 13 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 LKDLFDY(0.009)S(0.991)PPLHK;LKDLFDY(0.016)S(0.984)PPLHK ; 65.511 0.029358 2382064800 16512.8 14357.8 14361.4 13395.3 14800.8 14828.8 14766.9 14605.6 15385.3 15513.6 TRUE FALSE FALSE 14577.19462 14800.1468 15137.82072 13941.61823 13708.97447 14545.96535 15336.46428 16268.24247 14751.11142 15421.32442 0.945262172 0.959719567 0.981616126 0.904048048 0.888962199 0.943237102 0.994497221 1.054918633 0.956539855 1 13.91263905 -9.346905626 0.973924573 1.001066428 0.955550001 0 0.046011141 1.085511874 1.773268303 0.035678568 0.008499214 4.50E-10 9.346905626 -0.045516426 QGSITSPQANEQSVT(ph)PQRR ddPTM_HeLa_CUDC101_4h_R1 3 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QGSITSPQANEQS(0.238)VT(0.762)PQRR;QGSITSPQANEQS(0.003)VT(0.997)PQRR;QGSITSPQANEQSVT(1)PQRR ;; 199.36 2.24E-16 241446000 4803.6 4125.2 4706.9 4367.8 5140 4172.4 4208.6 4045.9 5061.3 5433.7 TRUE FALSE FALSE 4240.52929 4252.292522 4961.369252 4545.937763 4760.83244 4092.818422 4370.927112 4506.468902 4852.671072 5401.380111 0.785082554 0.787260373 0.918537327 0.841625227 0.88141037 0.757735678 0.809224128 0.834318046 0.898413178 1 12.39911236 -9.346276366 0.976898696 1.004088718 0.825268608 0.406066029 0.054030185 0.279029198 0.459335963 0.036064622 0.008625227 4.51E-10 9.346276366 -0.17882011 DS(ph)SPVGLVEEAGSR ddPTM_HeLa_CUDC101_4h_R1 1 DSSPVGLVEEAGSR 14 0 Q6ICB4 Q6ICB4 FAM109B Sesquipedalian-2 1 0 DS(0.873)S(0.127)PVGLVEEAGSR 101.61 0.00685 4539000 1002.8 1076.2 904.78 916.43 1135.6 997.48 1034.4 887.87 1081.2 1524.2 TRUE FALSE FALSE 885.2533041 1109.356446 953.6951436 953.8059765 1051.82905 978.4547309 1074.297155 988.9415319 1036.632478 1515.133991 0.584273939 0.732183723 0.629446075 0.629519226 0.694215203 0.645787592 0.709044323 0.65270896 0.684185349 1 10.56522967 -9.346185882 0.921588342 1.013417784 0.656848487 0.090177577 0.104386347 0.144731778 0.206593663 0.03641549 0.008217339 4.51E-10 9.346185882 -0.356569297 DLYANTVLSGGTTMYPGIADR ddPTM_HeLa_CUDC101_4h_R1 6 DLYANTVLSGGTTMYPGIADR 21 0 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;;; ;;;;; 243.86 2.37E-57 224716100 8677.14 8057.92 7311.61 7098.15 7657.24 7857.08 7315.87 7125.95 7909.37 7843.17 FALSE FALSE TRUE 7660.018803 8306.174964 7706.897753 7387.643238 7092.380661 7707.21929 7598.045557 7937.139344 7583.342421 7796.518476 0.982492227 1.065369753 0.988505033 0.94755669 0.909685609 0.988546274 0.974543391 1.018036367 0.972657532 1 12.92861432 -6.508541934 24.47682237 0.998448667 0.966197095 0.194425213 0.034925776 737.6796183 1259418.156 0.00541201 0.008074268 3.10E-07 6.508541934 -0.032251572 DLYDAGVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 DLYDAGVKR 9 1 P07355;P07355-2;H0YN42;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5 P07355 ANXA2 Annexin A2;Annexin 0 1 DLYDAGVK(1)R 108.98 0.0045922 8749700 6734.2 3077.1 3306.7 2448.6 8574.9 6756.6 7745.9 6290.3 5498.4 4163.3 FALSE TRUE FALSE 5944.827284 3171.901804 3485.470204 2548.464492 7942.346711 6627.729112 8044.661958 7006.362326 5271.753625 4138.536506 1.436456408 0.76643079 0.842198733 0.615788815 1.919119645 1.601466872 1.943842212 1.692956511 1.273820737 1 12.01490497 -5.741024669 24.99929114 1.107043711 1.786961967 0.687514562 0.257021484 142.4074504 174387.2938 0.043559805 0.087037412 1.82E-06 5.741024669 0.679918255 DLYDAGVKR ddPTM_HeLa_CUDC101_4h_R1 2 DLYDAGVKR 9 1 P07355;P07355-2;H0YN42;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5 P07355 ANXA2 Annexin A2;Annexin 0 0 ; ; 88.177 0.032669 228390000 9741.4 10442.4 10915 9594.7 13019.5 11078 10595.6 10578.3 10373.7 9596 FALSE FALSE TRUE 8599.527859 10764.11797 11505.09792 9986.013338 12059.07742 10866.70561 11004.27584 11782.49091 9946.091695 9538.922565 0.901519831 1.128441697 1.206121324 1.046870154 1.264197014 1.139196333 1.153618322 1.235201443 1.042685023 1 13.21961061 -7.15438074 4.886787947 0.953755237 1.169497694 0.619617805 0.066378979 0.08650567 3.236604861 0.010395819 0.012786156 7.01E-08 7.15438074 0.215742456 DLYDDHFK ddPTM_HeLa_CUDC101_4h_R1 1 DLYDDHFK 8 0 A0A087X2H1;Q9ULT8;G3V4V5;H0YJP0 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 0 0 96.034 0.020781 3913200 5741.3 4567.1 4427.9 4822 5247.8 5043.9 4756.5 4260.3 5315.7 4660.4 FALSE FALSE TRUE 5068.313517 4707.806938 4667.285668 5018.662002 4860.680249 4947.696011 4939.959798 4745.275331 5096.584596 4632.679734 1.094034945 1.016216792 1.00746996 1.083317279 1.049215687 1.067998717 1.066328795 1.024304637 1.100137477 1 12.17763123 -6.244119576 24.88419236 1.040452408 1.058724359 0.039776606 0.034305664 2255.551733 3240670.632 0.005910475 0.009788838 5.70E-07 6.244119576 0.018271951 DLYEDELVPLFEK ddPTM_HeLa_CUDC101_4h_R1 2 DLYEDELVPLFEK 13 0 O43390;B4DT28;O43390-4;O43390-3;O43390-2 O43390 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 0 ; ; 205.07 8.33E-17 127249000 1031.18 1125.39 1189.75 1004.68 1159.49 1160.74 1373.75 823.29 1077.43 1363.89 FALSE FALSE TRUE 910.3066436 1160.061932 1254.071484 1045.655193 1073.956733 1138.600818 1426.735998 917.0100057 1033.017879 1355.777522 0.671427745 0.855643285 0.924983239 0.771258688 0.792133455 0.839813908 1.052337847 0.676372038 0.761937606 1 10.40490474 -9.655350728 1.511230653 0.999545396 0.80796718 0 0.129100048 0.420878266 1.735635823 0.079770307 0.018164314 2.21E-10 9.655350728 -0.191578216 ETNLDSLPLVDT(ph)HSK ddPTM_HeLa_CUDC101_4h_R1 1 ETNLDSLPLVDTHSK 15 0 P08670 P08670 VIM Vimentin 1 0 ETNLDSLPLVDT(0.518)HS(0.482)K 157.88 0.00011691 7587100 3385.4 3083.2 3037.7 2687 3567.4 3237.7 2788.1 2707 3190 3630.2 TRUE FALSE FALSE 2988.568544 3178.189738 3201.927251 2796.587474 3304.240009 3175.946267 2895.637951 3015.153938 3058.50685 3608.607409 0.8281778 0.880724717 0.887302742 0.774976925 0.915655164 0.880103017 0.802425319 0.835545017 0.847558768 1 11.81722648 -9.345702071 0.763733033 1.014412729 0.849317102 0 0.061868209 0.397138268 0.355653552 0.04225484 0.0079463 4.51E-10 9.345702071 -0.165095627 FPEFCSSPS(ph)PPVEVK ddPTM_HeLa_CUDC101_4h_R1 1 FPEFCSSPSPPVEVK 15 0 Q68E01-4;Q68E01-3;Q68E01-2;Q68E01 Q68E01-4 INTS3 Integrator complex subunit 3 1 0 FPEFCS(0.025)S(0.014)PS(0.961)PPVEVK 123.76 0.00083883 19265000 2467.1 1908.3 1786.7 1723.8 1941.3 2258.5 2144.4 1741.3 2124.9 1201.1 TRUE FALSE FALSE 2177.910278 1967.092461 1883.294406 1794.104015 1798.094167 2215.422875 2227.110226 1939.522553 2037.310723 1193.955804 1.824112979 1.647542107 1.577356884 1.502655299 1.505997258 1.855531728 1.865320491 1.624450878 1.706353549 1 10.22153372 -9.345681777 0.913317973 0.971521048 1.682798145 0 0.250743229 0.240758501 0.33620123 0.120344243 0.026932794 4.51E-10 9.345681777 0.711277096 DMDDEESWIK ddPTM_HeLa_CUDC101_4h_R1 1 DMDDEESWIK 10 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 156.35 0.00046505 6579400 617.25 576.67 659.14 757.24 430.89 512.39 396.3 690.28 635.06 845.7 FALSE FALSE TRUE 544.8968907 594.4365192 694.7751022 788.1235203 399.1041032 502.6170144 411.5854238 768.858685 608.882558 840.6697388 0.648169983 0.707098747 0.826454278 0.937494814 0.474745414 0.597876897 0.489592291 0.914578757 0.724282712 1 9.715395332 -10.08283501 0.433374266 1.217659068 0.675717165 0.00011883 0.175188406 3.199758831 0.484676883 0.856499536 0.043472857 8.26E-11 10.08283501 -0.541941903 DMDDEESWIKEK ddPTM_HeLa_CUDC101_4h_R1 4 DMDDEESWIKEK 12 1 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ;;; ;;; 135.8 0.0017181 41411200 5365.1 5484.1 5509.8 5255.9 6483.2 6634.2 6303.1 6163.4 6365.1 5644.5 FALSE FALSE TRUE 4736.211111 5653.058621 5807.676454 5470.25832 6004.947252 6507.663688 6546.212678 6865.016543 6102.727884 5610.926263 0.844105035 1.007508984 1.035065546 0.97492964 1.070223876 1.159819856 1.166690199 1.223508601 1.087650701 1 12.45402324 -5.475176385 0.774003306 0.931830629 1.230589176 0.564116772 0.069143906 0.346448152 0.337682092 0.01205048 0.06301065 3.35E-06 5.475176385 0.298758547 S(ph)PARTPPSEEDSAEAER ddPTM_HeLa_CUDC101_4h_R1 1 SPARTPPSEEDSAEAER 17 1 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 0 S(0.598)PART(0.402)PPSEEDSAEAER 86.777 0.0048538 17620000 1288.9 1068.8 1113.6 1149 1426.9 1248.6 1275 1675.7 1468.7 1795.4 TRUE FALSE FALSE 1137.817096 1101.728461 1173.804584 1195.861186 1321.64043 1224.785035 1324.177177 1866.454915 1408.159564 1784.720881 0.637532237 0.617311353 0.657696448 0.67005502 0.740530603 0.686261392 0.741951972 1.045796536 0.789008287 1 10.80148275 -9.345089502 1.070160552 0.999878799 0.712016809 0.139181413 0.131263198 0.368673589 0.756078205 0.07926732 0.020785692 4.52E-10 9.345089502 -0.28786199 DMDLVEVNEAFAPQYLAVER ddPTM_HeLa_CUDC101_4h_R1 1 DMDLVEVNEAFAPQYLAVER 20 0 K7EME0;A0A0B4J2A4;P42765 K7EME0 ACAA2 "3-ketoacyl-CoA thiolase, mitochondrial" 0 0 76.156 0.027996 2978000 660.57 625.21 466.17 590.27 694.46 612.25 581.49 660.84 570.02 356.01 FALSE FALSE TRUE 583.138986 644.471979 491.3725603 614.343762 643.2310694 600.5723513 603.9182641 736.0673544 546.5235343 353.8924367 1.647785953 1.821095656 1.388479971 1.73596183 1.817589196 1.697047716 1.70650232 2.079918297 1.544321036 1 8.467167119 -10.75418659 0.224832131 1.97E-17 1.880010679 0.320397779 0.226768161 4.502462617 0.171830413 2.437780376 0.138360385 1.76E-11 10.75418659 1.880010679 DMDLWEQQEEER ddPTM_HeLa_CUDC101_4h_R1 2 DMDLWEQQEEER 12 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ; ; 191.33 1.47E-10 11008100 2783.76 2194.56 1855.45 1877.64 2124.29 2353.31 2022.35 1848.27 2144.18 2933.6 FALSE FALSE TRUE 2457.451873 2262.171792 1955.761239 1954.218275 1967.585359 2308.424533 2100.352717 2058.669586 2055.795993 2916.150817 0.842703971 0.775738957 0.670665326 0.670136216 0.674720027 0.791599844 0.720248317 0.705954429 0.704969023 1 11.50984962 -7.857672417 0.689099183 0.979151364 0.704138129 0.064530053 0.094941809 0.158691388 0.168438881 0.016758937 0.012976814 1.39E-08 7.857672417 -0.275013234 DMDRDVDR ddPTM_HeLa_CUDC101_4h_R1 2 DMDRDVDR 8 1 H0YIQ2;P49750-3;P49750-1;P49750 H0YIQ2 YLPM1 YLP motif-containing protein 1 0 0 ; ; 128.61 0.0072594 11251700 4485.6 3054.9 4089.6 5056.4 4309.8 3721.9 4011.9 2329.24 4352.2 4088.6 FALSE FALSE TRUE 3959.804768 3149.017848 4310.696146 5262.621848 3991.87464 3650.910959 4166.640327 2594.391266 4172.800474 4064.280825 0.974294085 0.774803214 1.060629502 1.294847003 0.982184749 0.898292002 1.025185145 0.638339568 1.026700824 1 11.98878437 -4.258371462 24.65739907 0.994264583 0.638339409 0.43586094 0.124384066 180.1130181 1447509.915 0.016969137 0.160454962 5.52E-05 4.258371462 -0.355925175 DMEPEMVCIDSCGR ddPTM_HeLa_CUDC101_4h_R1 2 DMEPEMVCIDSCGR 14 0 Q9NQT5 Q9NQT5 EXOSC3 Exosome complex component RRP40 0 0 ; ; 187.99 1.84E-10 8388000 4402.8 3360.4 3099.8 2828.5 3452.18 3187.3 2788.23 2979.37 3211.5 1409.49 FALSE FALSE TRUE 3886.710458 3463.929941 3267.384564 2943.858456 3197.519559 3126.507563 2895.772965 3318.529438 3079.120611 1401.106291 2.774029696 2.472282056 2.33200335 2.101095738 2.282139178 2.231456374 2.066776078 2.368506558 2.197635276 1 10.45235069 -9.403588954 1.098549393 0.990640331 2.349647604 0.140849599 0.406329588 0.160631241 0.342959472 0.169084956 0.041820969 3.95E-10 9.403588954 1.359007273 RGDS(ph)ES(ph)EEDEQDSEEVR ddPTM_HeLa_CUDC101_4h_R1 2 RGDSESEEDEQDSEEVR 17 1 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 RGDS(0.901)ES(0.613)EEDEQDS(0.486)EEVR;RGDS(0.904)ES(0.802)EEDEQDS(0.294)EEVR ; 102.72 0.0015367 27393000 2988.3 2871.89 2676.87 2692.46 2903.4 2821.2 2624 2469.7 3084.9 3650.7 TRUE FALSE FALSE 2638.016004 2960.369527 2821.589689 2802.270157 2689.221966 2767.39031 2725.208559 2750.840665 2957.739116 3628.985474 0.726929337 0.815756786 0.777514738 0.772191065 0.741039606 0.762579605 0.750956039 0.7580192 0.815031952 1 11.82535057 -9.344620923 0.764273744 1.022777812 0.760468475 0.328657622 0.06103896 0.15767625 0.141539704 0.026656913 0.005024212 4.52E-10 9.344620923 -0.262309337 DMGEDLECLCQIMR ddPTM_HeLa_CUDC101_4h_R1 1 DMGEDLECLCQIMR 14 0 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5;H0YD77 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 0 131.09 0.0039035 4475500 1078.1 670.54 804.56 767.21 815.12 637.11 733.99 683.13 840.98 292.15 FALSE FALSE TRUE 951.7267523 691.1985426 848.0569473 798.50014 754.9902215 624.9581882 762.3002402 760.8947579 806.3144484 290.4122788 3.277157413 2.380059636 2.92018282 2.749539872 2.599718664 2.151968886 2.62488984 2.62005023 2.77644751 1 8.181958642 -9.426797309 1.109096618 0.982512359 2.702194185 0 0.608620666 0.176194309 0.381329505 0.238093941 0.057428827 3.74E-10 9.426797309 1.719681826 DMGIQDDELSLR ddPTM_HeLa_CUDC101_4h_R1 2 DMGIQDDELSLR 12 0 Q96S82;H3BSE0;H3BSQ2 Q96S82 UBL7 Ubiquitin-like protein 7 0 0 ; ; 170.89 4.30E-06 11696200 2896.55 2721.98 2585.06 2305.28 2701.94 2501.4 2499.36 2717.35 3165.02 2610.49 FALSE FALSE TRUE 2557.0208 2805.840977 2724.816163 2399.299283 2502.623269 2453.689963 2595.761152 3026.68214 3034.556536 2594.962689 0.985378638 1.081264478 1.050040594 0.924598759 0.964415897 0.94555886 1.000307697 1.166368269 1.169402762 1 11.34149808 -4.263471608 5.85917048 0.993169865 1.171290795 0.258271831 0.070682681 0.073178554 11.34342976 0.00612942 0.051899503 5.45E-05 4.263471608 0.178120931 DMMANFHLNDLEAPHEDDAEGEGEWD ddPTM_HeLa_CUDC101_4h_R1 1 DMMANFHLNDLEAPHEDDAEGEGEWD 26 0 Q9BQ70 Q9BQ70 TCF25 Transcription factor 25 0 0 101.6 2.07E-06 6510700 1177.9 1081.5 957.57 994.95 1236.6 1019.3 975.27 1140 1110.9 1192 FALSE FALSE TRUE 1039.828348 1114.819733 1009.339131 1035.528362 1145.378482 999.8585508 1012.886491 1269.772992 1065.108232 1184.909931 0.877558978 0.940847658 0.851827725 0.873930022 0.966637591 0.843826627 0.854821505 1.071619841 0.898893835 1 10.21056168 -9.380632669 1.017789041 1.001998032 0.903688018 0 0.072946179 0.640768584 1.148362165 0.046942621 0.011125485 4.16E-10 9.380632669 -0.098310014 ASS(ph)PAES(ph)SPEDSGYMR ddPTM_HeLa_CUDC101_4h_R1 1 ASSPAESSPEDSGYMR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 2 0 AS(0.009)S(0.991)PAES(0.826)S(0.174)PEDSGYMR 149.3 0.0018583 15694000 4497.2 4333.5 3816.4 3640.1 4811.8 3978.9 4124.9 3884.5 4279.4 5066.4 TRUE FALSE FALSE 3970.045033 4467.009999 4022.726128 3788.559012 4456.8431 3903.009112 4283.998775 4326.695778 4103.001321 5036.264827 0.788291555 0.886968845 0.798751906 0.752255718 0.884950107 0.774980913 0.850630164 0.859108074 0.814691336 1 12.29813843 -9.344029573 0.862138035 1.010266556 0.821653491 0 0.071701496 0.295371651 0.357938812 0.038123845 0.008076662 4.53E-10 9.344029573 -0.188613065 SALNLNQPVSVSS(ph)VSPVK ddPTM_HeLa_CUDC101_4h_R1 1 SALNLNQPVSVSSVSPVK 18 0 Q86XJ1;G3V1N3;H0YIT6 Q86XJ1 GAS2L3 GAS2-like protein 3 1 0 SALNLNQPVS(0.002)VS(0.073)S(0.766)VS(0.16)PVK 179.84 2.76E-08 16571000 2468.4 2464.2 2626.6 2573.1 2584.1 2650.4 2442.5 1812.3 2518.4 3894.4 TRUE FALSE FALSE 2179.057894 2540.119081 2768.601941 2678.04214 2393.476091 2599.848036 2536.708043 2018.604906 2414.590486 3871.235936 0.562884291 0.656151969 0.715172619 0.691779624 0.618271821 0.67158088 0.655270845 0.521436807 0.623725995 1 11.91857852 -9.343820335 0.911160315 1.015186708 0.637249173 0 0.127475778 0.18841709 0.261812092 0.049956987 0.011184215 4.53E-10 9.343820335 -0.377937535 IS(ph)EDETERNGDDGTHDK ddPTM_HeLa_CUDC101_4h_R1 2 ISEDETERNGDDGTHDK 17 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 IS(0.987)EDET(0.012)ERNGDDGTHDK;IS(0.917)EDET(0.082)ERNGDDGTHDK ; 69.122 0.014965 67770000 1946.48 1831.56 1825.32 1607.07 1657.91 1968.84 1725.44 1888.24 1727.91 2265.17 TRUE FALSE FALSE 1718.316565 1887.988193 1924.00232 1672.613261 1535.609282 1931.287657 1791.990799 2103.189609 1656.684818 2251.696668 0.763120801 0.838473592 0.85446781 0.742823527 0.681978751 0.857703298 0.795840232 0.934046596 0.735749554 1 11.13679678 -9.343707353 0.898237171 1.009012401 0.802758365 0 0.10498449 0.395655745 0.530777334 0.056889772 0.012558397 4.53E-10 9.343707353 -0.206254035 MLGEDS(ph)DEEEEMDTSER ddPTM_HeLa_CUDC101_4h_R1 8 MLGEDSDEEEEMDTSER 17 0 A0A087X0M4;Q9BWU0;A0A087WWF4;H7C256 A0A087X0M4 SLC4A1AP Kanadaptin 1 0 MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(0.999)DEEEEMDT(0.001)SER;MLGEDS(0.98)DEEEEMDT(0.017)S(0.003)ER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER ;;;;;;; 322.68 5.32E-167 238186300 13147.8 12371.32 10613.46 10523.68 12175.93 11221.32 11035.52 11250.86 12900.94 13266.03 TRUE FALSE FALSE 11606.63481 12752.46571 11187.25575 10952.88116 11277.7359 11007.29202 11461.1637 12531.61242 12369.15779 13187.12306 0.880149124 0.967039258 0.848346959 0.83057397 0.855208209 0.83470003 0.869117824 0.950291611 0.937972425 1 13.68684224 -9.343257862 0.419311682 1.040124063 0.86715095 0.351150027 0.046622963 1.360871922 0.300769134 0.104510956 0.014188636 4.54E-10 9.343257862 -0.172973113 GSVFLES(ph)DSSPPSSSDAGLR ddPTM_HeLa_CUDC101_4h_R1 1 GSVFLESDSSPPSSSDAGLR 20 0 Q8TBP0 Q8TBP0 TBC1D16 TBC1 domain family member 16 1 0 GSVFLES(0.435)DS(0.252)S(0.301)PPS(0.004)S(0.004)S(0.004)DAGLR 107.75 0.00014842 0 1140.8 1150.2 936.56 946.76 1254 1019.1 1119.5 918.05 960.62 1377.2 TRUE FALSE FALSE 1007.077153 1185.636299 987.1932665 985.372965 1161.494918 999.6623654 1162.67949 1022.557101 921.022837 1369.008353 0.73562528 0.866054832 0.721100981 0.719771331 0.848420622 0.730209106 0.849285899 0.746932697 0.672766411 1 10.41891553 -9.34279579 0.847125892 1.013986013 0.775939528 0 0.114860422 0.293660934 0.340897377 0.047422668 0.009892284 4.54E-10 9.34279579 -0.238046485 DMTLEGDDLILEIE ddPTM_HeLa_CUDC101_4h_R1 1 DMTLEGDDLILEIE 14 0 P11498 P11498 PC "Pyruvate carboxylase, mitochondrial" 0 0 110.14 0.017262 1864000 1985.7 1747.1 1274.4 1441.9 1678.3 1880.6 1309.1 1195.1 1382 1567.8 FALSE FALSE TRUE 1752.939256 1800.92608 1343.297919 1500.706914 1554.495153 1844.730688 1359.592426 1331.145353 1325.033375 1558.474656 1.124778802 1.155569693 0.861931193 0.962933153 0.99744654 1.183677053 0.872386612 0.854133462 0.850211693 1 10.60591898 -6.76636703 24.99978299 1.067818181 0.964271248 0.058467151 0.1196598 160.9438775 816528.0355 0.017039766 0.022788892 1.71E-07 6.76636703 -0.103546933 DNDFIYHDR ddPTM_HeLa_CUDC101_4h_R1 2 DNDFIYHDR 9 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 0 ; ; 136.96 0.0021005 145867000 30229 28009 26918 26935 28351 26846 26316 25214 27984 28253 FALSE FALSE TRUE 26685.60244 28871.92409 28373.2685 28033.52572 26259.60321 26333.95728 27331.01694 28084.25984 26830.48768 28084.9499 0.950174472 1.028021207 1.010265947 0.998168977 0.935006233 0.937653703 0.973155268 0.99997543 0.955333293 1 14.77750961 -5.780324838 24.99863002 0.984391583 0.960584334 0.184282506 0.028127217 408.3720912 540560.9916 0.004700856 0.008530632 1.66E-06 5.780324838 -0.023807249 DNFTLIPEGTNGTEER ddPTM_HeLa_CUDC101_4h_R1 1 DNFTLIPEGTNGTEER 16 0 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 0 0 157.5 3.82E-07 0 2043.4 1617.8 1516.7 1561.5 1575.6 1661.5 1228.1 1704 1496 1455.4 FALSE FALSE TRUE 1803.87575 1667.6425 1598.69739 1625.184719 1459.371127 1629.809656 1275.468228 1897.976472 1434.334247 1446.743216 1.246852745 1.152687279 1.10503189 1.123340135 1.008728509 1.126536926 0.881613416 1.311895885 0.991422825 1 10.49859316 -5.890442546 19.77220821 1.121768567 1.070394137 0 0.122318982 7.432125484 1306.340526 0.018710797 0.033916358 1.29E-06 5.890442546 -0.05137443 QLS(ph)ALHR ddPTM_HeLa_CUDC101_4h_R1 2 QLSALHR 7 0 E7EX53;A0A2R8Y738;A0A2R8YEM3;E7EQV9;E7ENU7;P61313-2;P61313 E7EX53 RPL15 Ribosomal protein L15;60S ribosomal protein L15 1 0 QLS(1)ALHR;QLS(1)ALHR ; 91.265 0.020515 9845700 8120.2 5969.8 7029.4 6065.2 6592.9 6915.6 5788.5 7452 6666 4664.9 TRUE FALSE FALSE 7168.362465 6153.722462 7409.430627 6312.565072 6106.554902 6783.696452 6011.764384 8300.305558 6391.224659 4637.152967 1.545854216 1.327047545 1.597840459 1.361301884 1.316875882 1.462901159 1.296434348 1.789957247 1.37826479 1 12.1790236 -9.342721396 0.892490366 0.978438027 1.455709013 0.145987326 0.185005756 0.350408198 0.462906112 0.116213829 0.025527555 4.54E-10 9.342721396 0.477270987 DNGLRAIENLMQK ddPTM_HeLa_CUDC101_4h_R1 1 DNGLRAIENLMQK 13 1 A0A087WU66;A0A087WWG3;Q5RIB0;A0A0A0MRU4;C9J3G2;H0Y5V3;A0A0A6YYH9;A0A087X1C0;A0A0B4J2F1;A0A087WYD2;E7EUZ7;F8WEU0;F8WEG4;Q6NVZ8;A0A0B4J2E3;Q5JTY2;Q5RIA9-3;Q5JTY5-2;Q5JTY5;Q4V339;Q5RIA9;Q8IUF1 A0A087WU66 CBWD7;CBWD3;CBWD5;CBWD2;CBWD6 COBW domain-containing protein 5;COBW domain-containing protein 3;COBW domain-containing protein 6;COBW domain-containing protein 2 0 0 102.53 0.00078284 0 1648.1 1767.4 1799.4 1498.9 1829.4 1753.1 1710.4 1516.4 1978.3 430.7 FALSE FALSE TRUE 1454.912216 1821.851499 1896.681007 1560.031621 1694.448807 1719.662538 1776.370701 1689.020847 1896.753637 428.1381772 3.39823051 4.255288587 4.430067459 3.643757328 3.957714814 4.01660639 4.149059335 3.945036757 4.4302371 1 8.741932677 -8.707247298 0.573322237 0.855906569 4.103164572 0 1.076469583 0.149156114 0.092767087 0.237369466 0.076727535 1.96E-09 8.707247298 3.247258003 DNGNGTYSCSYVPR ddPTM_HeLa_CUDC101_4h_R1 2 DNGNGTYSCSYVPR 14 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 ; ; 166.62 5.80E-05 16097500 1006.68 1077.95 996.16 1035.01 1021.83 851.69 1064.58 957.48 1052.26 970.56 FALSE FALSE TRUE 888.6784964 1111.160362 1050.015423 1077.222181 946.4516367 835.4454323 1105.641207 1066.475653 1008.885397 964.787066 0.921113609 1.151715649 1.088339033 1.116538788 0.980995362 0.865937637 1.145995056 1.105400031 1.045707839 1 9.914066756 -7.281182863 24.96036222 0.962748093 1.060098874 0.115766021 0.087043878 924.4368499 1168700.41 0.015098025 0.017277246 5.23E-08 7.281182863 0.097350781 DNIQGITKPAIR ddPTM_HeLa_CUDC101_4h_R1 2 DNIQGITKPAIR 12 1 P62805 P62805 HIST1H4A Histone H4 0 0 ; ; 154.67 0.00034362 180329000 3631.5 3659.6 1687.59 3312 2736.3 4145.3 3476.8 2312 1266.28 2144 FALSE FALSE TRUE 3205.821075 3772.347938 1778.82622 3447.077676 2534.4486 4066.235309 3610.901341 2575.188735 1214.083402 2131.247393 1.504199412 1.770018793 0.83464089 1.617399129 1.189185549 1.90791333 1.694266631 1.208301178 0.569658598 1 11.05748235 -9.312449601 0.655546052 0.933185164 1.480438658 0.365822792 0.332210834 1.132573676 0.709015121 0.36402692 0.06278761 4.87E-10 9.312449601 0.547253493 DNKELHSGAARSVWK ddPTM_HeLa_CUDC101_4h_R1 1 DNKELHSGAARSVWK 15 2 A0A0A0MTS7;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12 A0A0A0MTS7 TTN Titin 0 0 41.577 0.039233 21759000 3959.3 3167.5 3019.6 3360 3578.1 3318.1 3034.8 3363.8 3279.9 3548.4 FALSE FALSE TRUE 3495.196856 3265.086921 3182.84871 3497.035323 3314.150692 3254.812771 3151.853253 3746.721395 3144.701134 3527.293959 0.990900361 0.9256634 0.902348584 0.991421572 0.939573149 0.922750644 0.893561265 1.062208435 0.891533615 1 11.7843461 -7.340901349 6.401203714 0.995916467 0.944758342 0 0.056741459 0.262436261 17.43645322 0.007359691 0.008396904 4.56E-08 7.340901349 -0.051158125 DNLAEDIMR ddPTM_HeLa_CUDC101_4h_R1 4 DNLAEDIMR 9 0 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ;;; ;;; 163.88 0.000212 175670000 17676.5 14845.1 12506.9 13916.6 13750.2 14432 12442.3 12674.7 14657.3 15769.4 FALSE FALSE TRUE 15604.48747 15302.45994 13183.06085 14484.1791 12735.87514 14156.73365 12922.20368 14117.53662 14053.11989 15675.60291 0.995463304 0.976195941 0.840992268 0.923995025 0.812464772 0.903106166 0.824351303 0.900605654 0.896496293 1 13.93623331 -6.842679726 5.180831272 0.997153786 0.867394684 0.487096695 0.046325597 0.061109923 2.849871416 0.004746945 0.006309661 1.44E-07 6.842679726 -0.129759101 DNLTLWTADNAGEEGGEAPQEPQS ddPTM_HeLa_CUDC101_4h_R1 1 DNLTLWTADNAGEEGGEAPQEPQS 24 0 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 0 149.41 1.09E-08 4809000 4614.7 4185.2 3892 3766.3 4480 4680.3 3473.1 4227.8 5096.2 4197.5 FALSE FALSE TRUE 4073.771861 4314.141051 4102.413293 3919.905993 4149.519325 4591.031075 3607.05863 4709.075663 4886.132479 4172.533083 0.976330632 1.033938129 0.983194911 0.939454742 0.994484464 1.100298304 0.86447694 1.128589173 1.171023065 1 12.02670777 -5.499335602 24.93551637 0.987895735 1.019946074 0 0.089852584 1897.537761 2009758.899 0.008673522 0.019282907 3.17E-06 5.499335602 0.032050338 DNLTLWTSDMQGDGEEQNKEALQDVEDENQ ddPTM_HeLa_CUDC101_4h_R1 1 DNLTLWTSDMQGDGEEQNKEALQDVEDENQ 30 1 P62258;P62258-2 P62258 YWHAE 14-3-3 protein epsilon 0 0 77.522 9.59E-06 3827900 2633 2549 2176.7 2538.3 3029.7 2473.1 2253.2 2243.8 2351.2 2517.8 FALSE FALSE TRUE 2324.363731 2627.531669 2294.378986 2641.822845 2806.205067 2425.929738 2340.106679 2499.225122 2254.282541 2502.824014 0.928696432 1.049826777 0.916716067 1.055536798 1.121215496 0.969276995 0.934986506 0.998562068 0.900695586 1 11.28934114 -7.267731337 24.96376701 0.966328872 1.005234384 0.149223464 0.062398573 1036.773661 4113456.102 0.010701676 0.012384908 5.40E-08 7.267731337 0.038905512 DNLTLWTSDQQDDDGGEGNN ddPTM_HeLa_CUDC101_4h_R1 8 DNLTLWTSDQQDDDGGEGNN 20 0 P61981 P61981 YWHAG "14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed" 0 0 ;;;;;;; ;;;;;;; 341.59 1.33E-192 835547900 50920.3 47416.4 43157.2 41336.87 51405.1 43957.8 42771.9 42113.7 50161.2 46839.1 FALSE FALSE TRUE 44951.49962 48877.24308 45490.40878 43022.76623 47613.04819 43119.3782 44421.62651 46907.75338 48093.5341 46560.49895 0.965442825 1.049757717 0.97701721 0.924018582 1.022606056 0.926093559 0.95406251 1.007458134 1.03292566 1 15.5068189 -6.523850312 24.99983314 0.989381401 0.96532572 0.148778604 0.038282752 62.42411702 1606243.557 0.00550099 0.007814781 2.99E-07 6.523850312 -0.024055681 DNLTLWTSDQQDEEAGEGN ddPTM_HeLa_CUDC101_4h_R1 3 DNLTLWTSDQQDEEAGEGN 19 0 Q04917 Q04917 YWHAH 14-3-3 protein eta 0 0 ;; ;; 292.12 2.73E-104 119567500 14058 12428.3 11421 11002.7 13177.8 11361.1 11609.5 11652.2 12869.4 11654.7 FALSE FALSE TRUE 12410.14255 12811.20119 12038.45381 11451.43766 12205.69995 11144.40595 12057.2823 12978.63935 12338.91788 11585.37733 1.071190191 1.10580785 1.039107615 0.988438904 1.053543584 0.961937245 1.04073281 1.120260392 1.065042384 1 13.50001741 -6.497616394 24.76421856 1.041518156 1.028924952 0.008477422 0.047439308 3588.764512 3517993.88 0.007948677 0.0121028 3.18E-07 6.497616394 -0.012593204 TTPPPGAQCEVPAS(ph)PQRPSR ddPTM_HeLa_CUDC101_4h_R1 2 TTPPPGAQCEVPASPQRPSR 20 1 D6R9H8;Q9H074 D6R9H8 PAIP1 Polyadenylate-binding protein-interacting protein 1 1 0 TTPPPGAQCEVPAS(0.988)PQRPS(0.012)R;TTPPPGAQCEVPAS(0.937)PQRPS(0.063)R ; 123.06 1.29E-05 12353700 1898.82 1519.76 2423.1 1737.61 1761.05 2089.23 1728.8 1458.63 2495.8 2581.6 TRUE FALSE FALSE 1676.243198 1566.582004 2554.100115 1808.477246 1631.14085 2049.381419 1795.480395 1624.674543 2392.922068 2566.244528 0.653189195 0.610457027 0.995267632 0.704717429 0.635613961 0.798591637 0.699652888 0.633094206 0.93246066 1 11.32544293 -9.342296778 0.972538999 1.006712883 0.716921091 0.45560332 0.108396583 0.390761956 0.637398367 0.081571333 0.019533431 4.55E-10 9.342296778 -0.289791792 DNLTLWTSDTQGDEAEAGEGGEN ddPTM_HeLa_CUDC101_4h_R1 4 DNLTLWTSDTQGDEAEAGEGGEN 23 0 P63104;B7Z2E6;H0YB80;B0AZS6;P63104-2 P63104 YWHAZ 14-3-3 protein zeta/delta 0 0 ;;; ;;; 225.29 9.08E-36 26489100 22812.8 20383.5 18648.8 18294 22126.5 20806.5 18624.8 18811.4 22253.9 21451.1 FALSE FALSE TRUE 20138.71817 21011.49147 19657.01054 19040.10839 20494.27218 20409.65068 19343.16477 20952.81374 21336.58482 21323.5079 0.944437391 0.985367491 0.921846941 0.892916329 0.961111665 0.957143204 0.907128642 0.982615704 1.000613263 1 14.38015717 -9.205055635 0.484153449 1.012439645 0.939515291 0.388678648 0.028393911 1.339744084 0.438915843 0.047069724 0.007769669 6.24E-10 9.205055635 -0.072924355 DNLTLWTSENQGDEGDAGEGEN ddPTM_HeLa_CUDC101_4h_R1 8 DNLTLWTSENQGDEGDAGEGEN 22 0 P31946-2;P31946 P31946-2 YWHAB "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed" 0 0 ;;;;;;; ;;;;;;; 366.02 1.32E-248 400517000 117202.6 105015.2 95991.8 91440.6 111322.4 99422.7 97358.4 97073.3 106375.6 102837.8 FALSE FALSE TRUE 103464.2889 108250.5938 101181.4071 95169.94291 103110.3683 97526.37765 101113.5461 108123.7321 101990.7527 102226.1162 1.012112098 1.058932862 0.989780409 0.930974847 1.008649963 0.954026048 0.989116577 1.057691871 0.997697619 1 16.64140429 -6.54733996 24.99362785 1.010560228 0.984696263 0.124671999 0.035167621 380.7194563 389004.6573 0.00535965 0.007579859 2.84E-07 6.54733996 -0.025863965 DNMAQEGVILDDVDSSVCR ddPTM_HeLa_CUDC101_4h_R1 1 DNMAQEGVILDDVDSSVCR 19 0 S4R338;Q9BV86 S4R338 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed" 0 0 188.19 3.69E-25 0 963.71 861.24 709.69 694.21 996.81 919.98 857.72 860.05 966.18 582.71 FALSE FALSE TRUE 850.7453747 887.7737836 748.0579881 722.5228844 923.2773122 902.4329143 890.8025477 957.9546156 926.3536515 579.244015 1.468716728 1.532642135 1.291438442 1.247354941 1.593935005 1.557949484 1.537870957 1.653801491 1.599245961 1 9.178027422 -11.64364122 0.209102903 1.17E-12 1.587281693 0 0.218708329 9.361899909 0.232082439 4.197941636 0.127083181 2.27E-12 11.64364122 1.587281693 DNPGVVTCLDEAR ddPTM_HeLa_CUDC101_4h_R1 1 DNPGVVTCLDEAR 13 0 P22314;P22314-2;Q5JRR9;Q5JRS0 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 184.96 4.84E-17 0 652.48 482.93 566.67 743.6 651.34 587.77 600.64 635.25 772.92 464.79 FALSE FALSE TRUE 575.9972835 497.8085009 597.3058943 773.9272221 603.2919459 576.5592665 623.806886 707.5642922 741.0599105 462.0254084 1.246678804 1.077448322 1.292798802 1.675075024 1.305754911 1.24789515 1.350157101 1.531440218 1.603937569 1 8.851828382 -8.339920533 0.224197061 0.854449915 1.48396562 0 0.233368569 2.336025634 0.308763796 0.512317522 0.235031843 4.57E-09 8.339920533 0.629515704 LPPKVES(ph)LESLYFTPIPAR ddPTM_HeLa_CUDC101_4h_R1 1 LPPKVESLESLYFTPIPAR 19 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 LPPKVES(0.989)LES(0.011)LYFTPIPAR 76.614 0.0050714 31893000 760.13 660.25 681.52 737.23 1060 783.33 812.82 696.23 1046.5 1191.6 TRUE FALSE FALSE 671.0287137 680.5915199 718.3650327 767.297426 981.8059118 768.3892854 844.1707397 775.4860089 1003.362827 1184.51231 0.566502102 0.574575303 0.60646481 0.64777497 0.828869319 0.648696749 0.712673674 0.654688011 0.847068298 1 10.21007748 -9.341980403 1.03944387 1.002130899 0.652442554 0.605108046 0.083686177 0.217898721 0.417382779 0.056262684 0.014399894 4.55E-10 9.341980403 -0.349688345 SSS(ph)LGSTPHEELER ddPTM_HeLa_CUDC101_4h_R1 1 SSSLGSTPHEELER 14 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(0.001)S(0.021)S(0.978)LGSTPHEELER 153 0.00015275 5647700 1412.9 1317 1280.4 1119.6 1688.7 1545.3 1010.5 1108.6 1638.3 1637.6 TRUE FALSE FALSE 1247.282004 1357.575209 1349.622297 1165.262127 1564.127965 1515.825977 1049.475323 1234.798543 1570.768581 1627.859482 0.766209871 0.833963388 0.829077885 0.715824762 0.960849497 0.93117741 0.644696508 0.758541235 0.964928851 1 10.66876046 -9.341919155 0.896085306 1.008983674 0.804885582 0.383988115 0.089461288 0.546080938 0.728877187 0.077564813 0.017126151 4.55E-10 9.341919155 -0.204098092 TKDQPDGSSLSPAQS(ph)PSQSQPPAASSLREPGLESK ddPTM_HeLa_CUDC101_4h_R1 1 TKDQPDGSSLSPAQSPSQSQPPAASSLREPGLESK 35 2 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 TKDQPDGSSLS(0.022)PAQS(0.458)PS(0.458)QS(0.056)QPPAAS(0.003)S(0.003)LREPGLESK 86.886 1.88E-09 26327000 3111.9 2843.2 2479.4 2134.5 3038.3 2898.2 2525.9 2394.9 2885.1 2462.4 TRUE FALSE FALSE 2747.127799 2930.795622 2613.443864 2221.554136 2814.170662 2842.921664 2623.324809 2667.525735 2766.174957 2447.753535 1.122305722 1.197340982 1.067690773 0.907588981 1.14969527 1.161441143 1.071727513 1.089785265 1.130087207 1 11.25724258 -9.34119749 1.10356009 1.000825193 1.096809438 0 0.08410332 0.690687882 1.525205821 0.049926134 0.01356256 4.56E-10 9.34119749 0.095984245 S(ph)PSGGAAGPLLTPSQSLDGSRR ddPTM_HeLa_CUDC101_4h_R1 2 SPSGGAAGPLLTPSQSLDGSRR 22 1 Q96CX2 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 1 0 S(0.5)PS(0.5)GGAAGPLLTPSQSLDGSRR;S(0.966)PS(0.034)GGAAGPLLTPSQSLDGSRR ; 112.64 6.47E-06 170498000 1781.74 1947.76 1394.76 1569.4 1821.21 1783.39 1872.6 1724.92 1883.11 2539.3 TRUE FALSE FALSE 1572.887138 2007.768177 1470.164945 1633.406916 1686.862967 1749.374807 1944.826809 1921.27792 1805.487409 2524.196131 0.62312398 0.795408943 0.582428967 0.647099841 0.668277297 0.693042346 0.77047373 0.761144468 0.715272235 1 11.3016083 -9.341041159 0.916841966 1.012207426 0.687727039 0.072071736 0.107724897 0.242122501 0.34207106 0.055206867 0.012486751 4.56E-10 9.341041159 -0.324480387 S(ph)PSAPAATSSASSSTSSYKR ddPTM_HeLa_CUDC101_4h_R1 4 SPSAPAATSSASSSTSSYKR 20 1 A0A087X0S7;A0A0C4DH00;A0A087WTU1;A0A0B4J2G4;Q15345-3;Q15345 A0A087X0S7 LRRC41 Leucine-rich repeat-containing protein 41 1 0 S(0.966)PS(0.034)APAATSSASSSTSSYKR;S(0.887)PS(0.113)APAATSSASSSTSSYKR;S(0.5)PS(0.5)APAATSSASSSTSSYKR;S(0.5)PS(0.5)APAATSSASSSTSSYKR ;;; 205.98 1.08E-24 92711000 5251.25 4203.47 4121.34 4720.07 5806.05 4803.87 4262.91 3928.56 4975.96 3431.49 TRUE FALSE FALSE 4635.706435 4332.973928 4344.152107 4912.574856 5377.749259 4712.244184 4427.331867 4375.771391 4770.848823 3411.079345 1.359014543 1.270264773 1.273541794 1.440181937 1.576553552 1.381452528 1.297926967 1.282811377 1.398633201 1 11.7360126 -9.340821319 0.477915414 0.901553509 1.381501245 0 0.152397716 0.827781532 0.242972093 0.192461599 0.026675356 4.56E-10 9.340821319 0.479947735 APAGQEEPGT(ph)PPSS(ph)PLSAEQLDR ddPTM_HeLa_CUDC101_4h_R1 2 APAGQEEPGTPPSSPLSAEQLDR 23 0 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 2 0 APAGQEEPGT(1)PPS(0.239)S(0.703)PLS(0.059)AEQLDR;APAGQEEPGT(1)PPS(0.238)S(0.706)PLS(0.056)AEQLDR ; 115.06 4.66E-06 12213200 1365.38 1314.29 1214.49 1152.94 1520.78 1149.31 1150.72 1384.34 1685.53 1654.31 TRUE FALSE FALSE 1205.332226 1354.781717 1280.149003 1199.961877 1408.595089 1127.388827 1195.103656 1541.92767 1616.05174 1644.470091 0.732960869 0.823840899 0.778456848 0.729695167 0.856564736 0.685563595 0.726740889 0.937644095 0.98271884 1 10.68340705 -9.339958066 0.897254672 1.010042655 0.777081483 0.577297139 0.070625827 0.34929532 0.468162167 0.056621955 0.012554003 4.57E-10 9.339958066 -0.232961172 VETLS(ph)PESALQGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 VETLSPESALQGSPR 15 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 2 0 VET(0.033)LS(0.954)PES(0.014)ALQGS(0.999)PR;VET(0.005)LS(0.995)PESALQGS(1)PR;VET(0.002)LS(0.997)PES(0.001)ALQGS(1)PR ;; 186.17 7.47E-10 104073000 10438.9 9569.4 9014.8 8349.9 10364 10109 8581.1 8279.4 11742.6 11615.4 TRUE FALSE FALSE 9215.267966 9864.221871 9502.167356 8690.445013 9599.468368 9916.187668 8912.075901 9221.89343 11258.56506 11546.31108 0.798113605 0.854318041 0.822961315 0.752659871 0.831388337 0.858818682 0.771854823 0.798687422 0.975078965 1 13.49514438 -9.339886842 0.616292358 1.032075889 0.80731004 0.825825669 0.03235279 0.353761649 0.187561179 0.045274457 0.007168578 4.57E-10 9.339886842 -0.224765849 DNYVPEVSALDQEIIEVDPDTK ddPTM_HeLa_CUDC101_4h_R1 2 DNYVPEVSALDQEIIEVDPDTK 22 0 H0YN88;A0A075B716;H3BNC9;P08708 H0YN88 RPS17 40S ribosomal protein S17 0 0 ; ; 132.24 2.65E-07 32719000 21505.5 20029.6 17859.5 18142.6 19265.8 20066.3 18957.3 15521.1 20285.6 22965.7 FALSE FALSE TRUE 18984.65789 20646.68824 18825.03859 18882.53365 17844.60032 19683.56876 19688.48941 17287.95929 19449.41898 22829.099 0.831599087 0.904402239 0.824607165 0.827125663 0.781660298 0.862214 0.862429543 0.757277337 0.851957363 1 14.4785863 -10.35574657 0.314023602 1.167656283 0.815672001 0.110827701 0.06003954 2.543395447 0.187546442 0.34286353 0.016634214 4.41E-11 10.35574657 -0.351984282 LGMLS(ph)PEGTCK ddPTM_HeLa_CUDC101_4h_R1 2 LGMLSPEGTCK 11 0 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 0 LGMLS(0.999)PEGT(0.001)CK;LGMLS(0.96)PEGT(0.04)CK ; 100.93 0.012912 94806000 9099.9 7052.2 6967.4 6879.2 7865.3 6641.8 6252.1 6098.4 6827.8 3350.2 TRUE FALSE FALSE 8033.223517 7269.469923 7344.078719 7159.76351 7285.092489 6515.118731 6493.245591 6792.617205 6546.355194 3330.272861 2.412181779 2.182845138 2.205248346 2.149902968 2.187536215 1.956331809 1.949763837 2.039657856 1.96571136 1 11.70142467 -9.339612107 0.992212707 0.979937485 2.147084206 0.229404368 0.317726948 0.141880096 0.243228086 0.120080449 0.029447888 4.57E-10 9.339612107 1.167146722 S(ph)LYASSPGGVYATR ddPTM_HeLa_CUDC101_4h_R1 2 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 S(0.984)LYAS(0.012)S(0.004)PGGVYATR;S(0.991)LYAS(0.008)S(0.001)PGGVYATR ; 207.08 1.36E-23 404150000 690.72 522.99 537.82 630.08 478.97 484.03 679.47 477.68 441.15 374.47 TRUE FALSE FALSE 609.7548487 539.102702 566.896176 655.7773858 443.6373373 474.7979342 705.6773855 532.0571604 422.9656103 372.2426358 1.63805752 1.448256191 1.522921131 1.761693376 1.191796142 1.275506588 1.895745725 1.429328909 1.136263205 1 8.540099497 -9.339326732 0.929251436 0.981500833 1.527567285 0.438470691 0.20260063 0.413292824 0.603980434 0.159393626 0.03662956 4.58E-10 9.339326732 0.546066452 TDEVPAGGS(ph)RS(ph)EAEDEDDEDYVPYVPLR ddPTM_HeLa_CUDC101_4h_R1 1 TDEVPAGGSRSEAEDEDDEDYVPYVPLR 28 1 D6RD33;D6RGI7;A0A499FJW5;Q9UJV9 D6RD33 DDX41 Probable ATP-dependent RNA helicase DDX41 2 0 T(0.005)DEVPAGGS(0.996)RS(0.996)EAEDEDDEDY(0.003)VPYVPLR 67.01 0.00054947 9485500 1301.7 873.62 978.8 841.12 984.44 928.78 996.18 1031.3 1131 249.74 TRUE FALSE FALSE 1149.116699 900.5351967 1031.716889 875.4245092 911.8198225 911.065069 1034.602996 1148.699023 1084.379701 248.2545354 4.628784314 3.62746725 4.155883344 3.526318292 3.672923119 3.669882879 4.167508943 4.627101864 4.368015673 1 7.955676264 -9.338959496 0.916546617 0.882839734 4.013604905 0 1.097620112 0.159210271 0.224972587 0.349936969 0.079362953 4.58E-10 9.338959496 3.130765171 QKS(ph)YTLVVAK ddPTM_HeLa_CUDC101_4h_R1 2 QKSYTLVVAK 10 1 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;E9PII3;A0A2R8Y5B3;E9PJP4;E9PQD2;E9PIG0;E9PRG1;E9PQN0 O43491 EPB41L2 Band 4.1-like protein 2 1 0 QKS(0.5)YT(0.5)LVVAK;QKS(0.949)YT(0.051)LVVAK ; 135.02 0.0088322 119287000 2996.3 2819.6 1789.47 2427.5 2745 2927 2691.5 1883.35 1672.61 2169.9 TRUE FALSE FALSE 2645.078256 2906.468534 1886.214161 2526.503943 2542.506819 2871.172352 2795.312057 2097.742951 1603.664308 2156.993338 1.226280216 1.347462916 0.874464528 1.171308181 1.178727247 1.331099313 1.295929852 0.972531029 0.743472073 1 11.07480601 -9.338954518 1.029894716 0.998528818 1.18243183 0.283438747 0.165553667 0.732402502 1.373846803 0.098995369 0.025214822 4.58E-10 9.338954518 0.183903012 (ac)ADEAALALQPGGS(ph)PSAAGADR ddPTM_HeLa_CUDC101_4h_R1 2 ADEAALALQPGGSPSAAGADR 21 0 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 ADEAALALQPGGS(0.915)PS(0.085)AAGADR;ADEAALALQPGGS(0.737)PS(0.263)AAGADR ; 126.09 2.17E-09 31148000 172.836 253.32 114.06 0 177.019 352.57 0 262.74 231.593 263.17 TRUE FALSE FALSE 152.5764261 261.1244889 120.2264286 0 163.960661 345.8453147 0 292.6492596 222.0466385 261.6046531 0.583232845 0.998164543 0.459572975 0 0.626749789 1.32201515 0 1.118669932 0.848787037 1 8.031244392 -9.338465465 0.639288157 1.057744353 0.613595006 0.065496228 0.412390088 2.035446925 1.180351621 0.526060572 0.085779514 4.59E-10 9.338465465 -0.444149347 EVSKPVGGAEGVEVPRS(ph)PVLLCK ddPTM_HeLa_CUDC101_4h_R1 1 EVSKPVGGAEGVEVPRSPVLLCK 23 2 Q8TED9-3;Q8TED9-2;Q8TED9 Q8TED9-3 AFAP1L1 Actin filament-associated protein 1-like 1 1 0 EVSKPVGGAEGVEVPRS(1)PVLLCK 65.25 0.0022027 20329000 2360.7 2080.8 1733.3 2180.1 2150.8 1976.4 1832.1 1550.5 2027.8 1650.9 TRUE FALSE FALSE 2083.982325 2144.906982 1827.007441 2269.013901 1992.139769 1938.703463 1902.764711 1727.002653 1944.213226 1641.080373 1.269884375 1.3070091 1.113295528 1.382634232 1.213919684 1.181358021 1.159458575 1.052357143 1.184715421 1 10.68043018 -9.337574003 1.047810222 0.999324464 1.216560146 0.068406892 0.105551525 0.387346105 0.757557962 0.062183379 0.016141327 4.60E-10 9.337574003 0.217235682 DPEEIEKEEQAAAEK ddPTM_HeLa_CUDC101_4h_R1 2 DPEEIEKEEQAAAEK 15 1 C9J9K3;A0A0C4DG17;P08865 C9J9K3 RPSA 40S ribosomal protein SA 0 0 ; ; 111.81 0.0027481 10319800 2279.99 1654.37 1671.37 1500.39 1736.7 1635.43 1614.42 1756.99 1841.95 2093.02 FALSE FALSE TRUE 2012.733028 1705.339179 1761.729318 1561.582389 1608.587101 1604.236898 1676.68872 1956.99864 1766.024041 2080.570624 0.967394716 0.819649744 0.846752952 0.750554858 0.773147079 0.771056209 0.805879263 0.940606686 0.848817157 1 11.02276355 -7.27572886 2.722150998 0.987105931 0.80783975 0.357843507 0.066729479 0.104307254 1.494386676 0.008957992 0.010552591 5.30E-08 7.27572886 -0.179266181 GLIVYCVTS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 GLIVYCVTSPK 11 0 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 GLIVYCVT(0.156)S(0.844)PK;GLIVY(0.002)CVT(0.226)S(0.771)PK ; 118.4 0.0045873 71847000 8830.3 7264.8 5930.3 6470.6 7467.2 7734.1 6335.3 5773.9 6546.8 3578.59 TRUE FALSE FALSE 7795.22562 7488.619877 6250.909956 6734.499036 6916.359533 7586.584928 6579.654643 6431.177437 6276.938133 3557.304388 2.191329381 2.105138909 1.757204129 1.893146693 1.944269812 2.132678034 1.849618117 1.807879432 1.764520954 1 11.79656871 -9.337291433 0.9821286 0.980851982 1.971974479 0.29346206 0.267418385 0.164996903 0.276213115 0.118006703 0.028741809 4.60E-10 9.337291433 0.991122497 KIDAGTMAEPS(ph)ASPSK ddPTM_HeLa_CUDC101_4h_R1 2 KIDAGTMAEPSASPSK 16 1 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 KIDAGTMAEPS(0.649)AS(0.308)PS(0.043)K;KIDAGTMAEPS(0.719)AS(0.267)PS(0.013)K ; 93.062 0.0036872 26587700 8326.6 7704.6 8089.1 7111.9 8283.8 7711.5 6934.2 8723.5 10179.3 10308.2 TRUE FALSE FALSE 7350.56857 7941.969594 8526.421214 7401.954022 7672.720578 7564.415986 7201.654417 9716.547978 9759.704946 10246.88637 0.717346549 0.775061742 0.832098738 0.722361287 0.748785563 0.738216051 0.702813924 0.948243947 0.952455663 1 13.32289798 -9.337291432 0.925082524 1.008404863 0.76565811 0.569251791 0.069991674 0.311043021 0.449987066 0.053183795 0.012203103 4.60E-10 9.337291432 -0.242746753 DPHLACVAYER ddPTM_HeLa_CUDC101_4h_R1 2 DPHLACVAYER 11 0 A0A087WVQ6;Q00610-2;Q00610;A0A087WX41;P53675-2;P53675 A0A087WVQ6 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 0 ; ; 113.22 0.0056098 25259000 5592.2 4245.5 4011.9 4380.9 4821 4317.7 4252.2 3978.7 4089 1854.46 FALSE FALSE TRUE 4936.690793 4376.298823 4228.795449 4559.572038 4465.364435 4235.347066 4416.208778 4431.619126 3920.449689 1843.429589 2.677992597 2.37399836 2.293982625 2.473418059 2.422313529 2.297536662 2.3956482 2.404007807 2.126715179 1 10.8481766 -9.312352311 0.890448548 0.942589561 2.426333138 0.333859351 0.356217607 0.108837096 0.145039532 0.110872744 0.025385065 4.87E-10 9.312352311 1.483743577 MGGTTSTRRVT(ph)FEADENENITVVK ddPTM_HeLa_CUDC101_4h_R1 1 MGGTTSTRRVTFEADENENITVVK 24 2 C9JRZ6;F8WAR4;Q9NX63 C9JRZ6 CHCHD3 MICOS complex subunit MIC19 1 0 MGGT(0.001)T(0.001)S(0.001)T(0.014)RRVT(0.983)FEADENENITVVK 61.181 0.0029229 0 391.84 329.72 381.93 368.26 449.27 374.36 412.74 368.97 450.54 550.74 TRUE FALSE FALSE 345.9091092 339.8782824 402.5782911 383.2792346 416.1282472 367.2197067 428.6595201 410.9720534 431.9685505 547.464174 0.631838804 0.620822875 0.735350933 0.700099208 0.760101331 0.670764817 0.782990998 0.750683009 0.789035285 1 9.096620748 -9.33726826 1.027832866 1.002344463 0.703115689 0.374898073 0.080825184 0.18522453 0.346006781 0.040676506 0.010364791 4.60E-10 9.33726826 -0.299228774 DPIDVDLPEEAER ddPTM_HeLa_CUDC101_4h_R1 1 DPIDVDLPEEAER 13 0 P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-4;H3BVD2;H3BT29;P29590-2 P29590;P29590-2 PML Protein PML 0 0 132.56 0.0056 3959600 814.72 677.16 767.48 547.35 457.03 710.47 605.48 542.86 607.32 802.67 FALSE FALSE TRUE 719.2197566 698.022497 808.9722903 569.6732988 423.3158074 696.9189685 628.8335664 604.6569881 582.2860125 797.8956831 0.901395724 0.874829269 1.013882275 0.713969647 0.53054029 0.87344622 0.788115013 0.757814588 0.729777119 1 9.640056331 -6.253882986 24.87204782 0.949229249 0.732431034 0.330877408 0.112903207 306.8924081 1010142.716 0.014050444 0.023007171 5.57E-07 6.253882986 -0.216798215 VLMRRS(ph)AQKS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 VLMRRSAQKSR 11 3 A0A2R8Y780;P48764-2;P48764 A0A2R8Y780 SLC9A3 Sodium/hydrogen exchanger 3 2 0 VLMRRS(1)AQKS(1)R 58.754 0.0032874 0 1356.2 1147.9 1454.3 1315.2 1598.3 1538.8 1323.1 1168.4 1592.3 2095.5 TRUE FALSE FALSE 1197.228292 1183.265438 1532.923857 1368.839541 1480.396593 1509.449954 1374.13241 1301.405933 1526.66472 2083.035873 0.574751644 0.568048517 0.735908525 0.657136806 0.710691838 0.724639443 0.659677746 0.624764052 0.73290371 1 11.02447197 -9.337257682 1.011044441 1.004179354 0.655613443 0.309107061 0.096684729 0.177968689 0.319562334 0.045255718 0.011345437 4.60E-10 9.337257682 -0.348565911 S(ph)DEEDEDSDFGEEQR ddPTM_HeLa_CUDC101_4h_R1 1 SDEEDEDSDFGEEQR 15 0 Q5VW52;Q9HCL2 Q5VW52 GPAM "Glycerol-3-phosphate acyltransferase 1, mitochondrial" 1 0 S(0.586)DEEDEDS(0.414)DFGEEQR 177.93 2.03E-07 9221500 1739.6 1600.2 1388.3 1356.2 1557.3 1181.2 1441.9 1179 1451.1 1073.3 TRUE FALSE FALSE 1535.686725 1649.500265 1463.355697 1411.511698 1442.421082 1158.670578 1497.514566 1313.212594 1391.285044 1066.915964 1.439369901 1.546045163 1.371575407 1.322983014 1.351953791 1.085999851 1.403591864 1.230849138 1.304024957 1 10.05923083 -9.337220202 1.081433839 1.001643807 1.350034423 0.092756866 0.14735041 0.31226418 0.658326097 0.081242235 0.021760457 4.60E-10 9.337220202 0.348390617 SRS(ph)PASAEAPGDSGER ddPTM_HeLa_CUDC101_4h_R1 1 SRSPASAEAPGDSGER 16 1 H7BY64;Q8NB15;Q8NB15-1 H7BY64 PRAP1;ZNF511 Zinc finger protein 511 1 0 S(0.252)RS(0.748)PASAEAPGDSGER 94.188 0.0036216 7432200 1277 976.94 1328.7 1201.7 1221.5 1151.4 1096.2 1104.4 1191.5 1371.8 TRUE FALSE FALSE 1127.311996 1007.038363 1400.533541 1250.71052 1131.392379 1129.438963 1138.480801 1230.120432 1142.385866 1363.640473 0.826692973 0.738492575 1.027054835 0.917184951 0.829685244 0.828252744 0.834883405 0.902085599 0.837747111 1 10.41324761 -9.337193413 1.05261553 1.000297746 0.860904779 0 0.086966493 0.486195524 0.9614404 0.050154077 0.013084403 4.60E-10 9.337193413 -0.139392967 EKEVDGLLTSEPMGS(ph)PVSSK ddPTM_HeLa_CUDC101_4h_R1 12 EKEVDGLLTSEPMGSPVSSK 20 1 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 1 0 EKEVDGLLTSEPMGS(0.963)PVS(0.024)S(0.013)K;EKEVDGLLTSEPMGS(0.818)PVS(0.138)S(0.044)K;EKEVDGLLTSEPMGS(0.978)PVS(0.018)S(0.005)K;EKEVDGLLTSEPMGS(0.891)PVS(0.087)S(0.022)K;EKEVDGLLTSEPMGS(0.862)PVS(0.109)S(0.029)K;EKEVDGLLTSEPMGS(0.896)PVS(0.084)S(0.02)K;EKEVDGLLTSEPMGS(0.924)PVS(0.057)S(0.018)K;EKEVDGLLT(0.029)S(0.023)EPMGS(0.89)PVS(0.047)S(0.011)K;EKEVDGLLTSEPMGS(0.926)PVS(0.055)S(0.019)K;EKEVDGLLTSEPMGS(0.977)PVS(0.018)S(0.006)K;EKEVDGLLTSEPMGS(0.976)PVS(0.018)S(0.006)K;EKEVDGLLTSEPMGS(0.894)PVS(0.082)S(0.025)K ;;;;;;;;;;; 176.77 1.76E-08 2336575000 74019 67118.5 61443.7 60958.3 70077.8 65314 64767.2 64016.3 70672.9 71804.4 TRUE FALSE FALSE 65342.60503 69186.34143 64765.53228 63444.44296 64908.30031 64068.24427 67265.2926 71303.65683 67759.73315 71377.30424 0.915453529 0.969304489 0.907368707 0.888860173 0.909368895 0.897599664 0.942390488 0.998968196 0.949317628 1 16.12317779 -9.337146244 0.749133195 1.007332024 0.925373812 0.147367759 0.035764222 0.682205748 0.58509887 0.035581084 0.006654696 4.60E-10 9.337146244 -0.081958212 TSTPS(ph)PQPSKR ddPTM_HeLa_CUDC101_4h_R1 1 TSTPSPQPSKR 11 1 Q8IY18 Q8IY18 SMC5 Structural maintenance of chromosomes protein 5 1 0 T(0.013)S(0.003)T(0.013)PS(0.964)PQPS(0.008)KR 71.933 0.030024 62543000 8361.4 6911.7 7113.3 8096.5 8491.8 8316.9 7464.7 6409.3 8543 8917.2 TRUE FALSE FALSE 7381.289367 7124.641285 7497.866515 8426.710266 7865.376832 8158.268989 7752.61598 7138.908805 8190.853924 8864.160098 0.832711648 0.803758191 0.845863165 0.950649602 0.887323418 0.920365709 0.874602432 0.805367765 0.92404174 1 13.11376822 -9.337031093 1.061843959 0.999967092 0.866117126 0.344150514 0.049677151 0.329615677 0.665513951 0.032744622 0.008617867 4.60E-10 9.337031093 -0.133849966 RTDPECTAPIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 RTDPECTAPIKK 12 2 Q8N1G2;Q5T7F5 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 0 1 ; RTDPECTAPIK(1)K;RTDPECTAPIK(1)K 151.16 0.00015954 75148000 5698.4 7006.2 10381.7 14788.5 17517.6 17907.5 18470.5 22443.4 3740.8 3935.1 FALSE TRUE FALSE 5030.44219 7222.052718 10942.9661 15391.63895 16225.36155 17565.94427 19182.91337 24998.26594 3586.602641 3911.69385 1.286000997 1.846272483 2.797500654 3.934775967 4.14791192 4.490623486 4.903991495 6.390649906 0.916892471 1 11.93357775 -5.921584431 0.530596033 0.962341928 6.133533356 0.960218925 0.356178873 0.153962053 0.073551338 0.091883268 0.369540646 1.20E-06 5.921584431 5.171191427 up DVMSDETNNEET(ph)ESPSQEFVNITK ddPTM_HeLa_CUDC101_4h_R1 1 DVMSDETNNEETESPSQEFVNITK 24 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DVMS(0.001)DET(0.012)NNEET(0.508)ES(0.378)PS(0.101)QEFVNITK 70.994 0.00058384 9807500 2136.8 2031.7 1624.9 1591 2547.2 2534.4 2167.2 2874.1 2278.6 3333.4 TRUE FALSE FALSE 1886.327543 2094.294269 1712.747009 1655.887857 2359.298131 2486.060543 2250.78963 3201.275926 2184.675144 3313.572789 0.569273006 0.632035088 0.516888301 0.499728831 0.712010353 0.750265861 0.679263675 0.966110036 0.659311047 1 11.6941719 -9.336978228 1.036673836 1.001916203 0.653549986 0 0.163335313 0.360393586 0.687248509 0.092410198 0.023756547 4.60E-10 9.336978228 -0.348366217 TSS(ph)LDTITGPYLTGQWPR ddPTM_HeLa_CUDC101_4h_R1 2 TSSLDTITGPYLTGQWPR 18 0 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 TS(0.002)S(0.998)LDTITGPYLTGQWPR;T(0.052)S(0.087)S(0.857)LDT(0.003)ITGPYLTGQWPR ; 256.35 2.63E-70 204800000 2869.1 2531.9 2616.3 2529.4 2787.2 2667.9 2598.4 2463.1 3544.8 3149.2 TRUE FALSE FALSE 2532.788447 2609.904838 2757.745092 2632.559865 2581.593809 2617.014253 2698.621158 2743.489348 3398.681844 3130.468418 0.809076505 0.833710643 0.880936883 0.840947588 0.824666939 0.835981682 0.862050274 0.876383014 1.085678368 1 11.61216283 -9.336917607 0.961537594 1.003952402 0.843333525 0.810670627 0.036532639 0.164181339 0.261099594 0.018869032 0.004502152 4.60E-10 9.336917607 -0.160618878 AAFTTPDHAPLSPQS(ph)SVASSGSEQTEEQGSSR ddPTM_HeLa_CUDC101_4h_R1 2 AAFTTPDHAPLSPQSSVASSGSEQTEEQGSSR 32 0 A0A087WZT0;M0QZ22;Q5PRF9;M0R0X3 A0A087WZT0 SAMD4B Protein Smaug homolog 2 1 0 AAFTTPDHAPLS(0.164)PQS(0.759)S(0.074)VAS(0.001)S(0.001)GS(0.001)EQTEEQGSSR;AAFTTPDHAPLS(0.057)PQS(0.925)S(0.015)VAS(0.002)S(0.001)GSEQTEEQGSSR ; 93.494 6.54E-10 44857500 3213.7 2844 2539.5 2670.5 3239.8 3064.5 2593 3145.9 3348.4 3217.9 TRUE FALSE FALSE 2836.994958 2931.620269 2676.793052 2779.414533 3000.806409 3006.049768 2693.012879 3504.01654 3210.377535 3198.759788 0.886904659 0.916486533 0.836822153 0.868903799 0.938115585 0.93975477 0.841892814 1.09542972 1.003631954 1 11.64329694 -9.336660344 1.038270006 1.000453483 0.909081417 0.190491886 0.069686231 0.671127835 1.284668824 0.045154296 0.011630947 4.61E-10 9.336660344 -0.091372066 PSLGT(ph)MPVQVT(ph)PPRGAFSPGMGMQPR ddPTM_HeLa_CUDC101_4h_R1 1 PSLGTMPVQVTPPRGAFSPGMGMQPR 26 1 Q15788-2;Q15788-3;Q15788;B5MCN7 Q15788-2 NCOA1 Nuclear receptor coactivator 1 2 0 PS(0.43)LGT(0.575)MPVQVT(0.992)PPRGAFS(0.003)PGMGMQPR 51.323 0.0021114 0 1911.4 1659.1 1839 1828.4 1998 1973.2 1638.7 1521.4 2261.4 2331.2 TRUE FALSE FALSE 1687.348589 1710.214904 1938.421903 1902.970055 1850.611521 1935.564498 1701.905208 1694.590026 2168.184135 2317.333919 0.728142188 0.738009698 0.836487952 0.821189402 0.798595103 0.835254894 0.734423811 0.731267088 0.935637336 1 11.17825023 -9.336660213 0.978935288 1.004542942 0.777879375 0.731893822 0.045413783 0.215398291 0.357846536 0.035177672 0.008547879 4.61E-10 9.336660213 -0.226663567 TLGT(ph)PTQPGSTPR ddPTM_HeLa_CUDC101_4h_R1 2 TLGTPTQPGSTPR 13 0 Q8NFH5-2;Q8NFH5;Q8NFH5-3 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 T(0.355)LGT(0.641)PT(0.005)QPGSTPR;T(0.136)LGT(0.833)PT(0.03)QPGS(0.001)TPR ; 154.23 0.00077696 126005000 5429.3 4202.2 5072.3 4798.5 5044.4 4633.4 4990.3 4614.9 5126 5162.8 TRUE FALSE FALSE 4792.885684 4331.664801 5346.523881 4994.203571 4672.284662 4545.025615 5182.777543 5140.241562 4914.70411 5132.091436 0.933904967 0.844035001 1.041782663 0.973132228 0.910405576 0.885608854 1.009876306 1.001588071 0.957641572 1 12.32533116 -9.336348841 1.159445645 0.998912505 0.948069369 0.017806069 0.058320573 0.899825377 2.232745464 0.034890213 0.010000889 4.61E-10 9.336348841 -0.050843136 VS(ph)PGLPSPNLENGAPAVGPVQPR ddPTM_HeLa_CUDC101_4h_R1 1 VSPGLPSPNLENGAPAVGPVQPR 23 0 C9JRJ5;Q9UGP4 C9JRJ5 LIMD1 LIM domain-containing protein 1 1 0 VS(1)PGLPSPNLENGAPAVGPVQPR 235.21 2.89E-46 38966000 1614 1455.7 1390.1 1202 1269 1260.2 1485.7 1041.2 1537.1 1074.1 TRUE FALSE FALSE 1424.809367 1500.548392 1465.253011 1251.022755 1175.388398 1236.163785 1543.003947 1159.725999 1473.740087 1067.711205 1.334452012 1.405387884 1.372330836 1.171686453 1.100848612 1.157769796 1.445151029 1.086179478 1.380279686 1 10.06030576 -9.335750838 1.083922099 1.001490209 1.26653932 0 0.168057517 0.417390494 0.885194136 0.082620762 0.02222439 4.62E-10 9.335750838 0.265049111 TSS(ph)FTEQLDEGTPNR ddPTM_HeLa_CUDC101_4h_R1 2 TSSFTEQLDEGTPNR 15 0 Q13439-3;Q13439-4;Q13439;Q13439-5;E7EVX2;Q86W71;C9J0Y3;C9JHJ5 Q13439-3 GOLGA4 Golgin subfamily A member 4 1 0 TS(0.005)S(0.869)FT(0.126)EQLDEGTPNR;TS(0.046)S(0.907)FT(0.046)EQLDEGTPNR ; 200 1.91E-16 99688000 6402.9 5554.9 5749.9 5038.8 6202 5250.2 5908.2 6260.7 5662.2 6453.9 TRUE FALSE FALSE 5652.361768 5726.039885 6060.756986 5244.304044 5744.490816 5150.061182 6136.081253 6973.392781 5428.801719 6415.511916 0.881046102 0.892530473 0.944703566 0.817441244 0.89540646 0.802751402 0.956444526 1.086958122 0.846199304 1 12.64734867 -9.335411511 0.996218456 1.001486338 0.903257898 0 0.088767699 0.772269777 1.339181654 0.054994901 0.013622134 4.62E-10 9.335411511 -0.098228439 SRDRT(ph)CCCRR ddPTM_HeLa_CUDC101_4h_R1 1 SRDRTCCCRR 10 3 Q9Y5X5-4;Q9Y5X5 Q9Y5X5-4 NPFFR2 Neuropeptide FF receptor 2 1 0 SRDRT(1)CCCRR 70.816 0.038455 13720000 4338.2 3220.4 4320.7 4775.4 4342.8 4053.9 3831.8 2916.6 4967.5 4749.6 TRUE FALSE FALSE 3829.682772 3319.616707 4554.290111 4970.161453 4022.440296 3976.578612 3979.59381 3248.613955 4762.737547 4721.349168 0.811141611 0.703107648 0.964616246 1.052699404 0.8519684 0.842254718 0.842893348 0.68806899 1.008766219 1 12.20498347 -9.335034 1.068382337 0.999698658 0.848744425 0.27847416 0.102038784 0.637714149 1.307400533 0.071528894 0.018991308 4.62E-10 9.335034 -0.150954233 EALPWGLEPQDVQSSDEMRS(ph)PEGYLR ddPTM_HeLa_CUDC101_4h_R1 1 EALPWGLEPQDVQSSDEMRSPEGYLR 26 1 Q9H5H4 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 EALPWGLEPQDVQS(0.053)S(0.053)DEMRS(0.731)PEGY(0.162)LR 80.002 3.27E-05 5131900 738.87 573.83 676.92 552.07 813.05 588.63 586.11 602.12 631.18 570.47 TRUE FALSE FALSE 652.2607787 591.5090221 713.5163428 574.5858009 753.0729213 577.4028635 608.716459 670.6629069 605.1624932 567.0768191 1.150215909 1.043084468 1.258235778 1.01324156 1.327991016 1.018209251 1.07342857 1.182666765 1.067161402 1 9.147400373 -9.334968385 0.735449611 0.986137171 1.133669049 0.124014517 0.099848955 1.053265035 0.863988008 0.097853176 0.018052002 4.62E-10 9.334968385 0.147531878 S(ph)VEDDKEGHLVCR ddPTM_HeLa_CUDC101_4h_R1 1 SVEDDKEGHLVCR 13 1 H3BUL5;H3BVF8;H3BQG1;P49761-3;P49761-1;P49761 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 S(1)VEDDKEGHLVCR 70.373 0.023783 12643000 4654.2 3755.9 3315.3 3240.3 3589.9 4062.7 2929.3 2647.8 3154.6 1135.4 TRUE FALSE FALSE 4108.641731 3871.614827 3494.535146 3372.45344 3325.080229 3985.210766 3042.284082 2949.214849 3024.566053 1128.64659 3.640326181 3.430316328 3.096217342 2.988050882 2.946077415 3.530964255 2.695515238 2.613054321 2.679816764 1 10.14037809 -9.334548496 0.997912667 0.968160634 3.148384631 0.292415765 0.597417434 0.169758066 0.295688344 0.268389428 0.066673549 4.63E-10 9.334548496 2.180223997 S(ph)ASPHDVDLCLVSPCEFEHR ddPTM_HeLa_CUDC101_4h_R1 1 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 S(0.5)AS(0.5)PHDVDLCLVSPCEFEHR 139.43 1.84E-05 28779000 6946.4 4723.8 4419.9 3982.7 6553.6 5919.6 5241.4 4694.8 5570 737.07 TRUE FALSE FALSE 6132.153522 4869.334679 4658.853163 4145.131721 6070.153985 5806.693493 5443.562554 5229.237055 5340.402242 732.6858749 8.369416871 6.645869459 6.358595577 5.657447295 8.284797337 7.925215555 7.429599424 7.137079115 7.288801962 1 9.517050993 -9.33439346 0.847948902 0.621587792 7.282355206 0 2.091436314 0.185349523 0.216606529 0.835548865 0.176607753 4.63E-10 9.33439346 6.660767415 DPTVHDDVLELEMDELNR ddPTM_HeLa_CUDC101_4h_R1 4 DPTVHDDVLELEMDELNR 18 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 0 ;;; ;;; 244.18 4.50E-56 12420800 14052.7 7749.32 7263.2 7353 8725.3 10432.6 8438.6 5088.77 8130 8697.8 FALSE FALSE TRUE 12405.46381 7988.067364 7655.870562 7652.887122 8081.652002 10233.61554 8764.079629 5668.055007 7794.877959 8646.065099 1.434810364 0.923896278 0.885474545 0.885129482 0.934720235 1.18361537 1.013649507 0.655564692 0.901552078 1 13.07782798 -7.221770539 24.47268284 1.205327136 0.93648991 0.119443793 0.183969255 391.9471398 241801.9917 0.033135144 0.040581795 6.00E-08 7.221770539 -0.268837226 DPVQEAWAEDVDLR ddPTM_HeLa_CUDC101_4h_R1 3 DPVQEAWAEDVDLR 14 0 P14618;B4DNK4;P14618-3;P14618-2;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;; ;; 231.69 1.57E-42 265001900 3072.93 2419.13 2191.71 2327.56 2277.5 2000.21 1711.8 1887.97 2137.12 1665.17 FALSE FALSE TRUE 2712.725804 2493.660528 2310.200472 2422.487957 2109.493362 1962.059327 1777.824699 2102.888873 2049.027009 1655.265495 1.638846344 1.506501849 1.395667631 1.463504172 1.274413905 1.185344184 1.074042022 1.270423917 1.237884204 1 10.69284692 -5.37564207 3.527812714 1.344281884 1.165493635 0.205018216 0.167453051 0.493270445 11.23393401 0.036790764 0.088169572 4.21E-06 5.37564207 -0.178788249 VSS(ph)PPNAMMSSR ddPTM_HeLa_CUDC101_4h_R1 2 VSSPPNAMMSSR 12 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 VS(0.003)S(0.997)PPNAMMSSR;VS(0.173)S(0.827)PPNAMMSSR ; 106.79 0.0065609 74172000 4962.9 3876.6 4254.8 4412.5 4832.9 3561.4 3517.5 3627.6 3755.3 3149.3 TRUE FALSE FALSE 4381.156385 3996.033451 4484.827358 4592.460822 4476.386595 3493.472229 3653.171153 4040.551321 3600.504945 3130.567824 1.399476591 1.276456437 1.4325923 1.466973751 1.42989606 1.115922869 1.166935636 1.290676819 1.150112423 1 11.61220864 -9.334232348 0.987289765 0.994349004 1.325728548 0.39103317 0.11824133 0.377931541 0.641572049 0.090439861 0.022239623 4.63E-10 9.334232348 0.331379544 DQALTEEHAR ddPTM_HeLa_CUDC101_4h_R1 2 DQALTEEHAR 10 0 P12814-4;P12814-3;P12814;P12814-2;H9KV75;H0YJ11 P12814-4 ACTN1 Alpha-actinin-1 0 0 ; ; 134.38 0.0016929 5926900 5090.2 3886 3811.2 4167 2964.2 3879 3164.8 3731.8 4562 5263.1 FALSE FALSE TRUE 4493.534472 4005.723054 4017.245 4336.948271 2745.536872 3805.014538 3286.867396 4156.613028 4373.952429 5231.794847 0.858889655 0.765649872 0.767852165 0.828959926 0.524779154 0.727286648 0.628248525 0.794490829 0.836032864 1 12.35309025 -7.490490301 0.475048191 0.994119311 0.670689737 0.441197119 0.091921682 0.337490246 0.19157819 0.036131538 0.034694362 3.23E-08 7.490490301 -0.323429573 TIQEVLEEQS(ph)EDEDREAK ddPTM_HeLa_CUDC101_4h_R1 5 TIQEVLEEQSEDEDREAK 18 1 M0R0Q7;P18858-2;P18858;P18858-3 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 0 TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK ;;;; 143.74 4.93E-05 692698700 9137.25 8302.64 9008.32 7995.78 8615.01 8587.02 7805.73 7914.34 10056.52 11026.98 TRUE FALSE FALSE 8066.195406 8558.434497 9495.337028 8321.882469 7979.497876 8423.2369 8106.799621 8815.276475 9641.985989 10961.39103 0.735873338 0.780779964 0.866252924 0.759199489 0.727963983 0.768445982 0.739577632 0.804211477 0.879631605 1 13.42014327 -9.334148806 0.789918543 1.018867924 0.769494825 0.580367153 0.05276485 0.2496639 0.244691885 0.040695727 0.008033887 4.63E-10 9.334148806 -0.249373099 KKPEDS(ph)PSDDDVLIVYELTPTAEQK ddPTM_HeLa_CUDC101_4h_R1 1 KKPEDSPSDDDVLIVYELTPTAEQK 25 2 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 KKPEDS(0.499)PS(0.499)DDDVLIVY(0.001)ELTPTAEQK 52.359 0.010184 18232000 2670.5 2092.9 2395.7 2331.2 2798.8 2672.3 2272.9 2230 2231.2 2762.8 TRUE FALSE FALSE 2357.468038 2157.379768 2525.218789 2426.276412 2592.3381 2621.33033 2360.566514 2483.854186 2139.228992 2746.366743 0.858395203 0.785539577 0.919476175 0.883449532 0.943915486 0.954472063 0.859523412 0.904414603 0.778930562 1 11.42330858 -9.334096421 1.10390254 0.998848691 0.887458503 0 0.082032483 0.375240229 0.831190252 0.031374161 0.008609285 4.63E-10 9.334096421 -0.111390188 DLAGS(ph)IIGK ddPTM_HeLa_CUDC101_4h_R1 2 DLAGSIIGK 9 0 P61978;P61978-2;P61978-3;S4R359 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 DLAGS(1)IIGK;DLAGS(1)IIGK ; 98.156 0.019471 15323300 6549.3 6417.6 5411.4 5553.9 7206.8 6177.2 5821.8 5518.6 6807.2 7798.1 TRUE FALSE FALSE 5781.600982 6615.318649 5703.956653 5780.412048 6675.168722 6059.380202 6046.348776 6146.815117 6526.604335 7751.716554 0.745847831 0.853400483 0.735831427 0.745694455 0.861121363 0.781682374 0.780001272 0.792961801 0.841956009 1 12.9203001 -9.33381456 0.867205819 1.011431679 0.785028438 0.318528749 0.062441606 0.228699688 0.282632551 0.035403714 0.007656929 4.64E-10 9.33381456 -0.226403241 DQDNMQAELNR ddPTM_HeLa_CUDC101_4h_R1 2 DQDNMQAELNR 11 0 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 0 ; ; 247.22 1.26E-54 27648000 2533.5 2039.63 2045.5 1788.6 2340.6 2207.74 1984.85 1983.39 2218.3 2024.27 FALSE FALSE TRUE 2236.526971 2102.468583 2156.085917 1861.546839 2167.938601 2165.631038 2061.406329 2209.1711 2126.860735 2012.229552 1.111467113 1.044845296 1.071491031 0.925116539 1.077381355 1.076234586 1.02443895 1.097872307 1.05696725 1 10.97457918 -9.716174047 1.630096963 1.000073776 1.060640078 0 0.052415347 0.577260794 2.774619368 0.036880987 0.008127332 1.92E-10 9.716174047 0.060566302 RLFDDEAS(ph)VDEPR ddPTM_HeLa_CUDC101_4h_R1 3 RLFDDEASVDEPR 13 1 A0A2R8Y549;Q8NI35-4;Q8NI35-3;Q8NI35-2;Q8NI35;A0A0U1RR46;A0A0X1KG69;A0A087WUZ6;Q8NI35-5 A0A2R8Y549 INADL InaD-like protein 1 0 RLFDDEAS(1)VDEPR;RLFDDEAS(1)VDEPR;RLFDDEAS(1)VDEPR ;; 137.39 0.0010068 15024300 6404.4 4854.1 5103.9 4575.8 5636.3 5198.6 5187 6045.3 4893.4 2373.83 TRUE FALSE FALSE 5653.68594 5003.649067 5379.832272 4762.420902 5220.521378 5099.445366 5387.064328 6733.472516 4691.691981 2359.710354 2.395923691 2.120450529 2.279869758 2.018222658 2.212356856 2.161047164 2.282934564 2.853516537 1.988249097 1 11.20439407 -9.333773616 0.673348106 0.82642485 2.29237937 0.291515203 0.372391381 0.305165766 0.201462871 0.268079403 0.045873282 4.64E-10 9.333773616 1.46595452 DFLNS(ph)LSPST(ph)S(ph)PTSTPYLLFY(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 DFLNSLSPSTSPTSTPYLLFYK 22 0 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 4 0 DFLNS(0.683)LS(0.318)PS(0.198)T(0.671)S(0.671)PT(0.207)S(0.204)T(0.202)PY(0.177)LLFY(0.668)K 50.883 0.017053 4795600 723.19 699.42 582.33 485.94 674.29 499.38 532.04 620.58 739.9 466.99 TRUE FALSE FALSE 638.4187645 720.9683012 613.8125213 505.7587336 624.5489701 489.8551585 552.560961 691.2243187 709.4010088 464.2123227 1.375273196 1.553100308 1.322266754 1.089498725 1.345395069 1.055239455 1.190319459 1.489026217 1.528182201 1 8.85864101 -9.333453545 1.105063521 1.003171935 1.298284525 0 0.220673588 0.452401712 1.004793977 0.100216082 0.02755209 4.64E-10 9.333453545 0.29511259 DQEGQDVLLFIDNIFR ddPTM_HeLa_CUDC101_4h_R1 2 DQEGQDVLLFIDNIFR 16 0 P06576;H0YH81;F8W0P7 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 0 ; ; 186.69 3.95E-10 169096000 1396.23 1406.58 1033.29 1402.5 1463.31 1325.3 1396.54 1114.68 1386.58 1394.88 FALSE FALSE TRUE 1232.566036 1449.915063 1089.152783 1459.700012 1355.364537 1300.022111 1450.405016 1241.570666 1329.424586 1386.583192 0.888923249 1.045674772 0.785494004 1.052731651 0.977485191 0.937572385 1.046028125 0.895417363 0.95877737 1 10.43731846 RS(ph)SPSARPPDVPGQQPQAAK ddPTM_HeLa_CUDC101_4h_R1 3 RSSPSARPPDVPGQQPQAAK 20 2 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 0 RS(0.499)S(0.355)PS(0.146)ARPPDVPGQQPQAAK;RS(0.646)S(0.257)PS(0.097)ARPPDVPGQQPQAAK;RS(0.47)S(0.47)PS(0.06)ARPPDVPGQQPQAAK ;; 67.88 0.005679 120787000 9196.65 8006.61 8301.83 7548.39 7736.19 8174.75 8675.45 9268.42 9511.06 9521.94 TRUE FALSE FALSE 8118.632628 8253.284164 8750.652041 7856.245971 7165.506676 8018.830264 9010.065013 10323.49947 9119.010081 9465.303077 0.857725586 0.871951389 0.924497818 0.830004693 0.757028763 0.847181564 0.951904544 1.090667608 0.963414484 1 13.20843299 -9.333386483 0.996091326 1.001729091 0.884148843 0.146169837 0.084427574 0.750903548 1.302802029 0.063950057 0.015883956 4.64E-10 9.333386483 -0.117580248 DQEWYDAEIAR ddPTM_HeLa_CUDC101_4h_R1 2 DQEWYDAEIAR 11 0 Q8IVM0;Q8IVM0-2 Q8IVM0 CCDC50 Coiled-coil domain-containing protein 50 0 0 ; ; 126.12 0.016166 18226000 2284.16 2023.61 2231.5 2213.51 2199.3 2041.68 1614.69 1762.91 2305.9 1772.96 FALSE FALSE TRUE 2016.414227 2085.955026 2352.14164 2303.786505 2037.062021 2002.738356 1676.969134 1963.592548 2210.849826 1762.414355 1.144120406 1.183578095 1.334613301 1.30717643 1.155836035 1.136360669 0.951518086 1.114149203 1.254443837 1 10.78333744 -8.720607381 0.897633487 1.010528186 1.166850261 0 0.125377568 0.589418867 0.947100349 0.05051304 0.022771414 1.90E-09 8.720607381 0.156322076 DQGTYEDYVEGLR ddPTM_HeLa_CUDC101_4h_R1 4 DQGTYEDYVEGLR 13 0 P60660-2;F8VZU9;G3V1Y7;F8W1R7;G8JLA2;G3V1V0;F8W180;P60660;F8VPF3;J3KND3;B7Z6Z4;H0YI43 P60660-2 MYL6 Myosin light polypeptide 6 0 0 ;;; ;;; 192.15 4.43E-11 87183500 6934.73 6227.51 5786.34 5521.28 6680.99 5918.41 5673.17 5954.9 6308.81 7056.62 FALSE FALSE TRUE 6121.851462 6419.372202 6099.167043 5746.461663 6188.146678 5805.52619 5891.986067 6632.781745 6048.758182 7014.64691 0.872724107 0.915138322 0.869490242 0.819208969 0.882175077 0.82762914 0.839954761 0.945561741 0.862304013 1 12.77615477 -9.27869699 0.477846131 1.032700055 0.862073238 0 0.05606827 0.795725937 0.242353492 0.06535104 0.0097985 5.26E-10 9.27869699 -0.170626817 S(ph)PVISRPK ddPTM_HeLa_CUDC101_4h_R1 1 SPVISRPK 8 1 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 S(0.998)PVIS(0.002)RPK 70.525 0.035935 13473000 4631.6 4528 3877.2 3993.1 4121.4 4823.2 4322.8 3699.9 5030.4 5392.2 TRUE FALSE FALSE 4088.690869 4667.502313 4086.81316 4155.955878 3817.372533 4731.205496 4489.531844 4121.08166 4823.044783 5360.126955 0.762797393 0.870782045 0.762447083 0.775346538 0.7121795 0.882666686 0.837579386 0.768840308 0.899800476 1 12.38805146 -9.333320257 0.814280025 1.014670542 0.795428576 0.49496258 0.058550486 0.333480761 0.352627008 0.048509254 0.009871621 4.64E-10 9.333320257 -0.219241966 VEAS(ph)LLHAT(ph)GMT(ph)LAFPAS(ph)VHDS(ph)LICSK ddPTM_HeLa_CUDC101_4h_R1 1 VEASLLHATGMTLAFPASVHDSLICSK 27 0 H7BXC5;D6RC17;D6RCC7;Q9P2D6-2;Q9P2D6-4;Q9P2D6 H7BXC5 FAM135A Protein FAM135A 5 0 VEAS(1)LLHAT(1)GMT(1)LAFPAS(0.959)VHDS(0.968)LICS(0.072)K 43.888 0.031849 38051000 0 173.92 183.58 252.2 373.42 378.08 357.34 119.95 269.82 1262.2 TRUE FALSE FALSE 0 179.2782691 193.5048901 262.4858061 345.8735506 370.8687539 371.1227235 133.6046231 258.6979054 1254.692378 0 0.142886234 0.154224967 0.209203316 0.275664025 0.295585404 0.29578782 0.106483968 0.206184328 1 10.29311798 -9.333283838 0.980054005 1.015728696 0.181954526 0.023500907 0.256012947 0.13767304 0.229678233 0.082627346 0.020197714 4.64E-10 9.333283838 -0.83377417 DQLIYNLLK ddPTM_HeLa_CUDC101_4h_R1 1 DQLIYNLLK 9 0 P00338-3;P00338;P00338-4;P00338-2;P00338-5;F5GYU2;F5GXY2;F5GXH2;F5H6W8;F5H5J4;F5GZQ4;F5GXU1;F5GWW2;F5GXC7;F5H8H6 P00338-3 LDHA L-lactate dehydrogenase A chain 0 0 133.13 0.015419 7429900 4004.6 2953.8 2228.1 3153.6 2665.6 2923.9 2715.3 2495.3 2693.7 3200.5 FALSE FALSE TRUE 3535.186859 3044.803077 2348.557826 3282.217439 2468.963999 2868.131479 2820.030031 2779.354866 2582.664546 3181.463284 1.111182668 0.957044858 0.738200512 1.031669124 0.776046674 0.901513305 0.88639402 0.873608971 0.811785118 1 11.63547476 -7.001704095 24.99544844 1.051535081 0.871381922 0.058439625 0.108328229 36.65063192 537597.2193 0.012305795 0.016042994 9.96E-08 7.001704095 -0.180153159 IPEISIQDMTAQVTS(ph)PSGK ddPTM_HeLa_CUDC101_4h_R1 2 IPEISIQDMTAQVTSPSGK 19 0 P21333-2;P21333;Q60FE5 P21333-2 FLNA Filamin-A 1 0 IPEISIQDMT(0.016)AQVT(0.06)S(0.727)PS(0.196)GK;IPEISIQDMTAQVT(0.085)S(0.903)PS(0.012)GK ; 169.72 1.98E-07 39192000 6337.6 4950.9 4440.1 4598 4597.6 4612.9 4755.7 4654.3 5038.5 1712.38 TRUE FALSE FALSE 5594.716135 5103.431361 4680.145237 4785.526314 4258.444208 4524.916618 4939.128942 5184.126699 4830.810897 1702.194688 3.2867663 2.99814786 2.749477055 2.811386 2.501737456 2.658283833 2.90162399 3.045554505 2.837989645 1 10.73318034 -9.333098145 0.970177995 0.958909322 2.876167086 0.006118686 0.594312797 0.142006723 0.231178647 0.195198663 0.04724913 4.64E-10 9.333098145 1.917257764 DFQESS(ph)PQKGLEVER ddPTM_HeLa_CUDC101_4h_R1 1 DFQESSPQKGLEVER 15 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 DFQES(0.097)S(0.903)PQKGLEVER 77.795 0.013841 17088000 1360.5 1219.9 1070.4 1350 1403.5 1278.9 1263.4 1237.9 1573.9 1599.2 TRUE FALSE FALSE 1201.024252 1257.483673 1128.269062 1405.058835 1299.966601 1254.507113 1312.129761 1378.817532 1509.023176 1589.687887 0.755509469 0.791025511 0.709742504 0.883858301 0.817749579 0.789153093 0.825400867 0.867351097 0.949257516 1 10.63452783 -9.333001883 1.012252665 1.00212459 0.801649422 0.644858015 0.049857831 0.242842433 0.438042493 0.035466709 0.008955717 4.65E-10 9.333001883 -0.200475168 S(ph)RSPVDLR ddPTM_HeLa_CUDC101_4h_R1 1 SRSPVDLR 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 S(0.985)RS(0.015)PVDLR 87.789 0.018112 72997000 2083.4 1912.3 1806.1 1553.2 2111.5 1509.1 1587.6 2349.5 1913.6 2031 TRUE FALSE FALSE 1839.18701 1971.215696 1903.743229 1616.54621 1955.738852 1480.316432 1648.834264 2616.957583 1834.720598 2018.919522 0.910975891 0.976371606 0.942951519 0.800698687 0.968705702 0.73322211 0.816691426 1.29621689 0.908763613 1 10.97936769 -9.332956654 0.626693027 1.012823532 0.916758975 0 0.14696557 3.411684586 1.891356774 0.188254394 0.030469114 4.65E-10 9.332956654 -0.096064557 THIY(ph)S(ph)GT(ph)LMDYK ddPTM_HeLa_CUDC101_4h_R1 1 THIYSGTLMDYK 12 0 A0A5F9ZH32;A0A5F9ZH07;A0A5F9ZHN8;A0A5F9ZI39;P23458 A0A5F9ZH32 JAK1 Tyrosine-protein kinase JAK1 3 0 T(0.033)HIY(0.994)S(0.995)GT(0.976)LMDY(0.003)K 56.087 0.0033116 0 367.69 280.52 357.54 215.14 342.41 336.41 285.58 308.86 334.7 250.36 TRUE FALSE FALSE 324.5899356 289.1624887 376.8696939 223.9143391 317.1510965 329.9935397 296.5949163 344.0193739 320.9035243 248.8708476 1.304250533 1.161897794 1.514318361 0.899721045 1.274360173 1.325963016 1.191762391 1.3823209 1.289437985 1 7.959253435 -9.33278335 0.900272691 0.989235981 1.254760949 0 0.175743498 0.638011524 0.865178143 0.117744087 0.02646682 4.65E-10 9.33278335 0.265524968 EYGS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 2 EYGSPLK 7 0 P21127;P21127-8;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-9;P21127-2;P21127-3;P21127-6;P21127-10;P21127-5;P21127-4;P21127-12;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 EYGS(1)PLK;EYGS(1)PLK ; 102.07 0.019513 822580000 12478.1 11312.4 10460.7 11457.7 11220.8 11410 11294.2 9420.1 12415.1 13909.9 TRUE FALSE FALSE 11015.43603 11660.92164 11026.23708 11924.99453 10393.06394 11192.37326 11729.82108 10492.44611 11903.34432 13827.1633 0.796651909 0.84333434 0.797433056 0.862432465 0.751641079 0.809448259 0.848317245 0.758828538 0.860866692 1 13.75521759 -9.332017574 0.625750081 1.030794053 0.806216781 0.332199305 0.054900796 0.34101329 0.188467365 0.043941922 0.007113298 4.66E-10 9.332017574 -0.224577272 DQQEAALVDMVNDGVEDLR ddPTM_HeLa_CUDC101_4h_R1 19 DQQEAALVDMVNDGVEDLR 19 0 P09211;A8MX94 P09211 GSTP1 Glutathione S-transferase P 0 0 ;;;;;;;;;;;;;;;;;; ;;;;;;;;;;;;;;;;;; 278.62 2.00E-86 429995500 48406.88 45846.75 43515.65 40414.6 50048.23 44937.18 42744.05 41686.96 50337.89 51498.64 FALSE FALSE TRUE 42732.69891 47259.23403 45868.23767 42062.88207 46356.27178 44080.07816 44392.70233 46432.43502 48262.94087 51192.3238 0.834748176 0.923170322 0.89599835 0.821663854 0.905531696 0.861068123 0.867174979 0.907019482 0.94277691 1 15.64363988 -9.419921539 1.038052852 1.003248861 0.873748456 0.5145302 0.035034654 0.245783669 0.454213836 0.024315204 0.005541857 3.80E-10 9.419921539 -0.129500405 REEDEENDNDNES(ph)DHDEADS ddPTM_HeLa_CUDC101_4h_R1 5 REEDEENDNDNESDHDEADS 20 1 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 0 REEDEENDNDNES(0.837)DHDEADS(0.163);REEDEENDNDNES(0.544)DHDEADS(0.456);REEDEENDNDNES(0.894)DHDEADS(0.106);REEDEENDNDNES(0.798)DHDEADS(0.202);REEDEENDNDNES(0.605)DHDEADS(0.395) ;;;; 93.729 0.00073861 594034900 7524.9 6889.08 7208.5 6983.8 7290.08 7320 6335.77 5871.81 8050.53 9629.4 TRUE FALSE FALSE 6642.842629 7101.324389 7598.213315 7268.629551 6752.305322 7180.383196 6580.142771 6540.233116 7718.683746 9572.123901 0.693977919 0.741875519 0.793785517 0.759353893 0.705413489 0.750134795 0.687427664 0.683258301 0.806371065 1 13.22462336 -9.331854496 0.730366616 1.029267571 0.725025355 0.414373025 0.068346981 0.219963218 0.177670246 0.041950131 0.007724982 4.66E-10 9.331854496 -0.304242215 RFSFCCS(ph)PEPEAEAEAAAGPGPCER ddPTM_HeLa_CUDC101_4h_R1 2 RFSFCCSPEPEAEAEAAAGPGPCER 25 1 Q13501;E7EMC7;E3W990;D6RBF1;C9J6J8 Q13501 SQSTM1 Sequestosome-1 1 0 RFS(0.411)FCCS(0.589)PEPEAEAEAAAGPGPCER;RFS(0.431)FCCS(0.569)PEPEAEAEAAAGPGPCER ; 65.801 0.0011353 43995000 1970.59 1727.53 1655.57 1860.97 2035.64 1680.06 1953.1 1819.53 2154.57 768.65 TRUE FALSE FALSE 1739.600427 1780.753152 1745.075122 1936.8684 1885.474893 1648.015655 2028.431721 2026.65794 2065.757713 764.0780356 2.276731363 2.330590684 2.283896462 2.534909146 2.467647027 2.156868249 2.654744184 2.652422719 2.703595204 1 9.577576179 -9.331798605 0.399382132 0.499324439 2.524345879 0 0.553025573 0.399284869 0.080320049 0.347127071 0.047930623 4.66E-10 9.331798605 2.02502144 VAVPTGPTPLDS(ph)TPPGGAPHPLTGQEEAR ddPTM_HeLa_CUDC101_4h_R1 2 VAVPTGPTPLDSTPPGGAPHPLTGQEEAR 29 0 A0A0A0MR08;E7ESU0;O94966-2;O94966-4;O94966-3;O94966;O94966-7;O94966-6;O94966-5 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 19 1 0 VAVPT(0.006)GPT(0.023)PLDS(0.58)T(0.391)PPGGAPHPLTGQEEAR;VAVPT(0.02)GPT(0.221)PLDS(0.65)T(0.109)PPGGAPHPLTGQEEAR ; 57.902 0.0017334 21712000 2130.61 2134.6 2373.84 1947.48 1897.73 2078.5 1917.01 1670.11 2442.81 4364.5 TRUE FALSE FALSE 1880.863126 2200.364496 2502.176971 2026.906652 1757.738239 2038.856076 1990.949718 1860.228572 2342.116338 4338.53976 0.433524464 0.507167069 0.57673252 0.467186372 0.405145126 0.469940623 0.458898576 0.428768359 0.539839777 1 12.08299384 -9.331479378 0.624264745 1.086480155 0.458939813 0.173452349 0.149785305 0.193468643 0.106345071 0.069555338 0.011248042 4.66E-10 9.331479378 -0.627540343 FQPPQVPDQAPAEAPTEKTEVS(ph)PVPR ddPTM_HeLa_CUDC101_4h_R1 2 FQPPQVPDQAPAEAPTEKTEVSPVPR 26 1 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 1 0 FQPPQVPDQAPAEAPT(0.258)EKT(0.207)EVS(0.534)PVPR;FQPPQVPDQAPAEAPT(0.16)EKT(0.13)EVS(0.71)PVPR ; 87.719 2.77E-05 15575000 1444.08 1191.28 1283.87 1338.32 1696.56 1387.76 1581.04 1402.58 1324.69 914.65 TRUE FALSE FALSE 1274.807131 1227.981925 1353.279896 1392.902474 1571.408149 1361.29079 1642.021242 1562.244038 1270.085718 909.2096211 1.402104753 1.350603751 1.488413523 1.531992669 1.728323274 1.497224357 1.805987535 1.718244068 1.396911876 1 9.82846914 -9.331315042 0.092782726 6.17E-18 2.311921306 0.564915751 0.14547973 7.126902923 0.170581246 3.034072122 1.361432332 4.66E-10 9.331315042 2.311921306 DQTDFEHR ddPTM_HeLa_CUDC101_4h_R1 2 DQTDFEHR 8 0 F8VZI0;A0A2R8Y891;P08237-2;P08237;P08237-3 F8VZI0 PFKM "ATP-dependent 6-phosphofructokinase, muscle type" 0 0 ; ; 155.58 0.001512 25983000 9972.4 7776.4 9756.2 9532.9 8362.4 7221.9 8454.5 5978.8 8611.6 10716.5 FALSE FALSE TRUE 8803.450389 8015.981667 10283.64968 9921.692867 7745.522412 7084.15429 8780.592897 6659.402425 8256.626203 10652.75778 0.826401066 0.752479483 0.965350935 0.931373178 0.727090822 0.665006605 0.824255378 0.625134126 0.775069364 1 13.37893934 -4.139970452 0.052735502 1.433538326 3.68E-12 0.176294497 0.108163316 120.5800879 0.977411045 8.890340118 19.27383555 7.24E-05 4.139970452 -1.433538326 DQVANSAFVER ddPTM_HeLa_CUDC101_4h_R1 1 DQVANSAFVER 11 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 188.27 3.45E-10 49254000 1108.1 1034.6 1155.2 1105.7 1444.5 1134.1 1259.7 1447 1417.3 1280.5 FALSE FALSE TRUE 978.2101978 1066.4748 1217.653606 1150.795225 1337.942113 1112.468932 1308.287051 1611.720631 1358.878294 1272.883529 0.768499376 0.837841621 0.956610388 0.904085251 1.051111184 0.873975432 1.027813638 1.26619647 1.067559021 1 10.3138847 -1 0.765905512 0.893538777 74.74013978 0.505536784 0.094235764 223.2889289 0.845955918 0.016110623 28531.05613 0.1 1 73.846601 DQVLHEHIQR ddPTM_HeLa_CUDC101_4h_R1 2 DQVLHEHIQR 10 0 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 0 0 ; ; 134.57 0.0013715 11226700 10783.3 8659.6 9250.4 9523.2 9888.2 9051.1 9261.8 8420.6 8501.3 9559.3 FALSE FALSE TRUE 9519.29792 8926.392012 9750.504605 9911.597259 9158.767186 8878.465348 9619.030728 9379.167067 8150.872816 9502.440858 1.001773972 0.939378855 1.026105266 1.043058032 0.963833116 0.934335239 1.012269465 0.987027145 0.857766224 1 13.21408243 S(ph)RVFDLQFSTDSPR ddPTM_HeLa_CUDC101_4h_R1 2 SRVFDLQFSTDSPR 14 1 Q15003;C9J470;E9PHA2;C9JZP1 Q15003 NCAPH Condensin complex subunit 2 1 0 S(1)RVFDLQFSTDSPR;S(1)RVFDLQFSTDSPR ; 93.115 0.006469 27885000 2356.4 2467.6 1755.86 2113.31 2481.6 2498.1 2554 1608.99 2614.6 3092.8 TRUE FALSE FALSE 2080.186364 2543.623831 1850.787103 2199.499916 2298.537312 2450.452905 2652.508636 1792.150918 2506.825081 3074.403888 0.676614537 0.827355131 0.601998687 0.715423216 0.747636744 0.797049768 0.862771689 0.582926311 0.815385737 1 11.58609099 -9.331312998 0.897532538 1.011539178 0.728938837 0.271330799 0.101891701 0.353700295 0.476381726 0.069342743 0.015572916 4.66E-10 9.331312998 -0.282600341 DGQDAIAQS(ph)PEKESK ddPTM_HeLa_CUDC101_4h_R1 5 DGQDAIAQSPEKESK 15 1 Q9NWH9;H0YL55;H7BXE3 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 DGQDAIAQS(0.998)PEKES(0.002)K;DGQDAIAQS(0.997)PEKES(0.003)K;DGQDAIAQS(0.999)PEKES(0.001)K;DGQDAIAQS(0.999)PEKES(0.001)K;DGQDAIAQS(1)PEKESK ;;;; 102.03 0.0060082 357862000 19014.5 17038 18312.3 16807.2 16446.2 17808.5 16807.8 16510.8 16977.9 21725.2 TRUE FALSE FALSE 16785.64913 17562.92058 19302.31833 17492.67026 15232.99659 17468.83253 17456.08248 18390.32273 16278.06378 21595.97754 0.777258131 0.813249622 0.893792295 0.809996687 0.70536268 0.808892883 0.808302492 0.851562412 0.753754431 1 14.398475 -9.331171042 0.788776535 1.015856794 0.80525439 0 0.088849346 0.349977944 0.342323968 0.048099741 0.009523407 4.66E-10 9.331171042 -0.210602404 GS(ph)NS(ph)DS(ph)PPGRPAPAASPEHRRPSPR ddPTM_HeLa_CUDC101_4h_R1 1 GSNSDSPPGRPAPAASPEHRRPSPR 25 3 C9JTQ0 C9JTQ0 ANKRD63 Ankyrin repeat domain-containing protein 63 3 0 GS(0.999)NS(0.999)DS(0.999)PPGRPAPAAS(0.001)PEHRRPS(0.001)PR 44.848 0.022983 7867300 310.56 290.84 338.79 289.95 257.93 300.48 377.75 174.52 304.8 442.31 TRUE FALSE FALSE 274.1566276 299.8004357 357.1060122 301.7754143 238.9030178 294.7488446 392.319944 194.3866514 292.236015 439.6791204 0.623537973 0.681861889 0.812196885 0.686353753 0.543357659 0.670372622 0.892286956 0.442110263 0.664657477 1 8.780307213 -9.330675126 0.808335236 1.024091397 0.673362733 0 0.157115093 0.469619909 0.488302443 0.108797546 0.022068575 4.67E-10 9.330675126 -0.350728664 DRDDRDFDFCR ddPTM_HeLa_CUDC101_4h_R1 1 DRDDRDFDFCR 11 2 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 0 0 76.332 0.022408 45572000 1374.8 1007.2 976.06 1059.7 1312.2 1234 1148.9 1072.6 1179.5 976.61 FALSE FALSE TRUE 1213.648028 1038.230638 1028.828756 1102.919146 1215.40162 1210.463506 1193.213458 1194.700448 1130.880511 970.8010803 1.250151089 1.069457646 1.059772982 1.1360918 1.251957425 1.246870786 1.229101906 1.230633621 1.164894162 1 9.923031904 -12.66881554 0.317042781 1.67E-12 1.20316999 0.042829021 0.086506086 19.79313631 0.439966318 12.49495872 0.030547362 2.14E-13 12.66881554 1.20316999 DRDGYSYGSR ddPTM_HeLa_CUDC101_4h_R1 2 DRDGYSYGSR 10 1 Q13247-3;Q13247;A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80;Q13247-2 Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 0 0 ; ; 112.85 0.0090964 8846000 1673.28 1626.81 1591.42 1614.03 1771.04 1430.03 1708.54 1506.84 1653.89 1286.49 FALSE FALSE TRUE 1477.140655 1676.930088 1677.456979 1679.85712 1640.393908 1402.75456 1774.43896 1678.372575 1585.715954 1278.8379 1.155064809 1.311292141 1.311704148 1.313580962 1.282722312 1.096897863 1.387540172 1.312420108 1.239966343 1 10.32061769 -7.928145824 0.812506234 1.024794192 1.28919345 0.214578197 0.100952014 0.228763701 0.328280401 0.024292418 0.018918876 1.18E-08 7.928145824 0.264399259 DRDNDSDDVESNLLLPAGIALR ddPTM_HeLa_CUDC101_4h_R1 1 DRDNDSDDVESNLLLPAGIALR 22 1 Q9NZM1-8;Q9NZM1-7;Q9NZM1-5;Q9NZM1-2;Q9NZM1-6;Q9NZM1-3;Q9NZM1 Q9NZM1-8 MYOF Myoferlin 0 0 117.03 4.05E-06 4257400 1560.2 1292.3 1404.3 1159.8 1411.1 1466.5 1029.6 994.76 1363.4 1186.8 FALSE FALSE TRUE 1377.315721 1332.114231 1480.220706 1207.101657 1307.005964 1438.528956 1069.312017 1107.999457 1307.200075 1179.740861 1.167473101 1.129158339 1.254699871 1.023192209 1.107875473 1.219360119 0.906395678 0.939188846 1.10804001 1 10.20425428 -4.739439611 24.99863452 1.102362498 0.922792076 0.510183284 0.076940822 186.2206303 211601.6336 0.012481947 0.046626071 1.82E-05 4.739439611 -0.179570422 DRDVTFSPATIENELIK ddPTM_HeLa_CUDC101_4h_R1 2 DRDVTFSPATIENELIK 17 1 H7C2D6;P55145 H7C2D6 MANF Mesencephalic astrocyte-derived neurotrophic factor 0 0 ; ; 179.97 5.00E-08 6843200 4315.9 3237.2 3875.8 3645.3 4380.1 3919.6 4020.1 3574.8 4111.3 1799.26 FALSE FALSE TRUE 3809.996744 3336.934295 4085.337472 3793.97109 4056.988749 3844.84016 4175.156604 3981.740782 3941.830474 1788.557922 2.13020596 1.865712178 2.284151619 2.121245862 2.268301574 2.14968725 2.334370363 2.22622971 2.203915471 1 10.80458112 -9.550465471 0.398075761 0.484484985 2.258492514 0 0.394622106 0.410192508 0.072123753 0.316113763 0.033534482 2.82E-10 9.550465471 1.774007529 DRDYFDYSR ddPTM_HeLa_CUDC101_4h_R1 2 DRDYFDYSR 9 1 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 0 0 ; ; 134.23 0.0028807 18650000 6886.3 5178.4 5570.6 5574.5 6319.3 6136.9 5645.1 5340.2 6075.7 4838.7 FALSE FALSE TRUE 6079.098353 5337.940366 5871.763486 5801.852205 5853.137829 6019.848857 5862.833398 5948.106782 5825.257074 4809.919197 1.263867043 1.109777555 1.220761357 1.206226543 1.216889014 1.251548854 1.218904759 1.236633411 1.211092502 1 12.23179694 -9.407317284 0.823348163 0.980358647 1.218242347 0 0.075939606 0.259190876 0.270600047 0.042105125 0.007756702 3.91E-10 9.407317284 0.2378837 DRDYLFR ddPTM_HeLa_CUDC101_4h_R1 1 DRDYLFR 7 1 Q9UBK8;Q9UBK8-1 Q9UBK8 MTRR Methionine synthase reductase 0 0 111.65 0.017116 6833800 1961 1672.5 2007.4 1888.8 2079.1 1851.9 1716.3 2368.5 1911.7 1401.9 FALSE FALSE TRUE 1731.134553 1724.027743 2115.926116 1965.833428 1925.728935 1816.578093 1782.498266 2638.120466 1832.898917 1393.561436 1.242237699 1.237137953 1.518358689 1.410654297 1.381875879 1.303550777 1.279095574 1.893077978 1.315262369 1 10.44456089 -1 0.044153375 3.51E-13 3.656593588 0.31836659 0.18136314 282.0346743 0.954869407 20.60316288 74.31988013 0.1 1 3.656593588 DRDYSDHPSGGSYR ddPTM_HeLa_CUDC101_4h_R1 2 DRDYSDHPSGGSYR 14 1 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 0 ; ; 86.262 0.010581 26556000 10427.8 4285.2 3884.4 3588.4 13741.2 10386.6 9314 8398.5 9190.3 7535.4 FALSE FALSE TRUE 9205.469092 4417.221933 4094.402414 3734.750462 12727.53905 10188.49291 9673.2441 9354.551292 8811.471944 7490.579106 1.228939574 0.589703662 0.546606925 0.498593021 1.699139529 1.360174262 1.291388017 1.2488422 1.17634055 1 12.87086154 -5.745545241 24.99999118 0.982540231 1.389299474 0.439523556 0.283426226 259.5236861 408204.1509 0.047447616 0.094647852 1.80E-06 5.745545241 0.406759244 DREAAEGLGSHDR ddPTM_HeLa_CUDC101_4h_R1 2 DREAAEGLGSHDR 13 1 P17655 P17655 CAPN2 Calpain-2 catalytic subunit 0 0 ; ; 98.253 0.0061267 23068300 5366.9 4605.6 4178.23 4584.4 4801.6 4370.5 3740.97 3960.28 3939.14 4765.4 FALSE FALSE TRUE 4737.800118 4747.493077 4404.117752 4771.371647 4447.395534 4287.139994 3885.260466 4411.102267 3776.766982 4737.055189 1.000157256 1.002203455 0.929716369 1.00724426 0.938852379 0.905022176 0.820184758 0.931190812 0.797281609 1 12.20977476 -5.427533529 1.835317363 0.99541046 0.873948611 0.012043243 0.071176088 0.135962709 0.887884996 0.004669055 0.013342695 3.74E-06 5.427533529 -0.121461849 DREDYVPYTGEK ddPTM_HeLa_CUDC101_4h_R1 1 DREDYVPYTGEK 12 1 Q9NYL9 Q9NYL9 TMOD3 Tropomodulin-3 0 0 182.37 1.83E-10 30340000 3961.2 3483 3515.7 3426.5 3336.8 3119.6 2800.2 2670.6 3252.7 3698.2 FALSE FALSE TRUE 3496.874141 3590.307102 3705.769376 3566.247481 3090.650912 3060.098828 2908.204652 2974.610309 3118.622329 3676.202942 0.951219015 0.97663463 1.008042656 0.970089937 0.840718252 0.83240748 0.791089256 0.80915291 0.848327032 1 11.8440007 -5.716249063 3.429178543 0.979192457 0.81218142 0.695063775 0.044818716 0.044647028 1.077071608 0.003382859 0.006929518 1.92E-06 5.716249063 -0.167011037 DREEALHQFR ddPTM_HeLa_CUDC101_4h_R1 3 DREEALHQFR 10 1 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;F6S8Q4;A0A2R8Y645;O00571;O00571-2;A0A2U3TZJ9;A0A0D9SFB3;A0A0D9SF53;A0A0D9SG12;A0A2R8YF78;A0A2R8YDT5;A0A2R8Y7T2;A0A0J9YVQ7;O15523-2;O15523;A0A2R8YDH3;A0A087WVZ1 A0A2R8Y5G6 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 0 ;; ;; 112.11 0.0042965 207418000 6266.9 5828.1 5372.9 5134.1 5832.5 5656.4 5600.7 5079.3 5608.8 5050.2 FALSE FALSE TRUE 5532.303482 6007.656853 5663.375226 5343.490789 5402.248095 5548.513594 5816.720875 5657.506981 5377.60289 5020.161186 1.102017102 1.196705968 1.128126173 1.06440622 1.076110486 1.105246104 1.158672134 1.126957237 1.071201241 1 12.29351797 -8.772055413 0.79573283 1.003303768 1.119529611 0.350331654 0.04182315 0.342391233 0.423074987 0.02172296 0.008482329 1.69E-09 8.772055413 0.116225843 DREEDEEDAYER ddPTM_HeLa_CUDC101_4h_R1 2 DREEDEEDAYER 12 1 P49756 P49756 RBM25 RNA-binding protein 25 0 0 ; ; 198.97 3.39E-16 50376000 5910.7 5755.6 5205.4 5147.9 5160.7 5265.3 4420.8 4347 5345.9 5693.8 FALSE FALSE TRUE 5217.856706 5932.923214 5486.819669 5357.853613 4780.005443 5164.873175 4591.311737 4841.844909 5125.539739 5659.933024 0.921893719 1.048232053 0.96941424 0.946628448 0.844533923 0.912532561 0.811195418 0.855459753 0.905583108 1 12.46656927 -5.849897089 4.029380832 0.969940576 0.856447253 0.604325103 0.043551458 0.115315442 3.53885732 0.006480764 0.012261375 1.41E-06 5.849897089 -0.113493324 DREEDEEDAYERR ddPTM_HeLa_CUDC101_4h_R1 2 DREEDEEDAYERR 13 2 P49756 P49756 RBM25 RNA-binding protein 25 0 0 ; ; 105.13 0.0029598 62970000 4516.2 5013.8 4712.4 4861.6 5911.4 4891.1 4516.4 4874.2 4662.1 5211.5 FALSE FALSE TRUE 3986.817882 5168.269235 4967.166598 5059.877062 5475.327799 4797.810417 4690.599061 5429.059226 4469.926265 5180.501766 0.769581415 0.997638736 0.958819594 0.976715633 1.05691071 0.926128517 0.905433348 1.047979418 0.862836549 1 12.33887612 DRELWVQR ddPTM_HeLa_CUDC101_4h_R1 2 DRELWVQR 8 1 Q9Y3C8 Q9Y3C8 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 0 0 ; ; 122.19 0.0087681 9685500 6520 4334.9 2963 4297.6 4633.5 4406 3835.2 3887.6 3462.9 2860.4 FALSE FALSE TRUE 5755.735484 4468.453131 3123.188743 4472.874704 4291.695936 4321.962891 3983.124949 4330.14867 3320.157796 2843.386214 2.024253848 1.571525215 1.098404687 1.573080253 1.509360887 1.520005573 1.400838525 1.522884457 1.167677391 1 11.47339436 -9.664986218 1.53125771 1.001520261 1.591810974 0.353219298 0.224667296 0.324948388 1.376883733 0.191738125 0.043503642 2.16E-10 9.664986218 0.590290714 DREPYFDR ddPTM_HeLa_CUDC101_4h_R1 2 DREPYFDR 8 1 H0YIQ2;P49750-3;P49750-1;P49750;F8VU51;H0YI23 H0YIQ2 YLPM1 YLP motif-containing protein 1 0 0 ; ; 107.01 0.016145 28319000 6953.1 6917.3 5953.9 6805.6 7297.5 6750.3 6105.3 6667.4 6400.2 10220.7 FALSE FALSE TRUE 6138.068158 7130.413814 6275.785844 7083.161784 6759.177964 6621.549274 6340.783466 7426.389865 6136.381047 10159.90682 0.604146107 0.70181882 0.617701122 0.697167987 0.665279523 0.651733268 0.624098584 0.730950588 0.603980052 1 13.31059955 -9.302068731 0.851173753 1.017301923 0.657224879 0 0.127503099 0.141379228 0.169457263 0.034138877 0.007586317 4.99E-10 9.302068731 -0.360077044 YS(ph)PDELR ddPTM_HeLa_CUDC101_4h_R1 1 YSPDELR 7 0 S5FZ81;Q8WUB8-3;Q8WUB8-2;Q8WUB8 S5FZ81 PHF10 PHD finger protein 10 1 0 Y(0.002)S(0.998)PDELR 83.948 0.040329 1560200 1469.2 1704 1669 1260.8 1808.4 1714.6 1666.2 1371 1858 3099 TRUE FALSE FALSE 1296.982603 1756.49822 1759.231188 1312.220874 1674.997935 1681.896862 1730.465892 1527.069098 1781.412454 3080.56701 0.42102074 0.570186662 0.571073826 0.42596732 0.543730401 0.5459699 0.561736163 0.495710398 0.57827421 1 11.5889802 -9.3304553 0.897174663 1.020744083 0.513955433 0.183544695 0.138441176 0.14112572 0.18996573 0.049592242 0.011146744 4.67E-10 9.3304553 -0.50678865 DRHDDYYR ddPTM_HeLa_CUDC101_4h_R1 1 DRHDDYYR 8 1 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 0 0 88.177 0.039482 2401900 326.08 209.68 245.41 512.87 362.04 229.69 261.38 187.68 169.23 324.64 FALSE FALSE TRUE 287.8573967 216.1399923 258.6776069 533.7870554 335.3330305 225.3090459 271.4615142 209.0447326 162.2542678 322.7090268 0.892002928 0.66976742 0.801581565 1.654081575 1.039118843 0.698180178 0.841195912 0.647780865 0.502788129 1 8.334090123 -5.25802875 24.53617739 0.974521759 0.740266668 0.087665847 0.289699946 346.2734061 2491080.301 0.036197744 0.08827779 5.52E-06 5.25802875 -0.234255091 (ac)SSDASQGVIT(ph)TPPPPSMPHK ddPTM_HeLa_CUDC101_4h_R1 1 SSDASQGVITTPPPPSMPHK 20 0 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 S(0.001)S(0.001)DAS(0.001)QGVIT(0.96)T(0.037)PPPPSMPHK 98 9.52E-08 32196000 2570.5 2183.3 2493.2 1989.7 2829.2 2608 2175.4 1891 2864.8 2747.5 TRUE FALSE FALSE 2269.189887 2250.564885 2627.989934 2070.848566 2620.495553 2558.256745 2259.305907 2106.263796 2746.711731 2731.157748 0.830852736 0.824033283 0.962225611 0.758231035 0.959481581 0.936693147 0.827233765 0.771198148 1.005695015 1 11.41529693 -9.330291452 0.963925233 1.003211295 0.860686263 0.406087653 0.069323611 0.504497677 0.809462761 0.051361712 0.01240228 4.67E-10 9.330291452 -0.142525032 DRLEQLER ddPTM_HeLa_CUDC101_4h_R1 2 DRLEQLER 8 1 P21127;P21127-8;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-9;P21127-2;P21127-3;P21127-6;Q9UQ88-9;E7ESP2;J3KS35;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 0 0 ; ; 134.26 0.0063421 8560800 4010.4 3132.6 2678.8 2663.9 3190.5 3245.6 2735.1 2444.6 2962.8 2707.4 FALSE FALSE TRUE 3540.306991 3229.111693 2823.624031 2772.545356 2955.143171 3183.695588 2840.593723 2722.883383 2840.67213 2691.296264 1.315465353 1.199835089 1.049168785 1.030189576 1.09803711 1.18295991 1.055474182 1.011736767 1.055503315 1 11.3940855 -6.754087532 24.99062248 1.156947041 1.074970895 0.122765327 0.090074483 336.234199 1142933.377 0.02007664 0.02806146 1.76E-07 6.754087532 -0.081976147 SSSPLPTVQLHPQS(ph)PTAGKK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPLPTVQLHPQSPTAGKK 20 1 A0A087X2C4;H0YAH0;O60245;O60245-2 A0A087X2C4 PCDH7 Protocadherin-7 1 0 SSSPLPTVQLHPQS(0.986)PT(0.014)AGKK 133.48 9.98E-06 24197000 1637.3 1426 1104.6 1540.8 1805.3 1284.2 1160.8 1208.2 925.31 1195.8 TRUE FALSE FALSE 1445.378176 1469.93337 1164.318017 1603.640484 1672.126616 1259.706025 1205.572445 1345.736604 887.1683302 1188.687328 1.2159448 1.236602204 0.979498973 1.349085201 1.406700127 1.059745481 1.014204843 1.132119921 0.746342885 1 10.21515356 -9.33028684 0.98635373 0.997017367 1.17671223 0.312906301 0.154153339 0.769187643 1.304889273 0.099612629 0.024609844 4.67E-10 9.33028684 0.179694863 DRPGDEDWVHR ddPTM_HeLa_CUDC101_4h_R1 2 DRPGDEDWVHR 11 1 O60826 O60826 CCDC22 Coiled-coil domain-containing protein 22 0 0 ; ; 97.734 0.0090623 43333000 9573.7 8065.3 8697 9154.6 8807.2 8010.9 8254.7 8797.2 9048.2 9085.9 FALSE FALSE TRUE 8451.485399 8313.782333 9167.186127 9527.964158 8157.510402 7858.10543 8573.086544 9798.637688 8675.229366 9031.856663 0.935741754 0.92049538 1.014983571 1.054928628 0.903193076 0.870043195 0.949205337 1.084897386 0.960514509 1 13.14080688 (ac)AAAS(ph)PLRDCQAWK ddPTM_HeLa_CUDC101_4h_R1 1 AAASPLRDCQAWK 13 1 F8WBU8;A9UJP8;Q5R3I4 F8WBU8 TTC38 Tetratricopeptide repeat protein 38 1 0 AAAS(1)PLRDCQAWK 65.157 0.0068918 40293000 1241.2 956.3 838.85 1032.3 1178.5 990.1 1126 837.62 905.12 549.36 TRUE FALSE FALSE 1095.708418 985.7624695 884.2007684 1074.401656 1091.564403 971.2154921 1169.430197 932.971275 867.8105705 546.0923823 2.006452485 1.805120345 1.619141371 1.967435714 1.998863999 1.778482036 2.141451218 1.708449532 1.589127771 1 9.093001222 -9.33011538 0.755273067 0.91526297 1.893531299 0.418301105 0.233585727 0.251115301 0.220642081 0.15670617 0.029831283 4.68E-10 9.33011538 0.978268329 DRPMEESLLLFEAMR ddPTM_HeLa_CUDC101_4h_R1 1 DRPMEESLLLFEAMR 15 1 P47897;P47897-2;A0A1B0GVU9;B4DDN1;A0A0U1RQQ5;A0A1B0GTT3 P47897 QARS Glutamine--tRNA ligase 0 0 157.35 0.00010839 6586500 1117.9 928.37 888.97 659.09 1020.4 1065.9 1012 855.67 1164.4 1321.2 FALSE FALSE TRUE 986.8614566 956.9719793 937.0304072 685.970539 945.1271249 1045.569733 1051.033179 953.0760141 1116.402939 1313.341444 0.751412713 0.728654368 0.713470523 0.522309368 0.719635499 0.79611417 0.800274128 0.725687915 0.85004775 1 10.35902632 -8.852146159 0.661789488 1.007509832 0.71381526 0.457670583 0.084337746 0.377371948 0.303214239 0.058871887 0.018110987 1.41E-09 8.852146159 -0.293694572 RES(ph)PSPAPKPR ddPTM_HeLa_CUDC101_4h_R1 1 RESPSPAPKPR 11 2 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RES(0.998)PS(0.002)PAPKPR 61.235 0.032952 1583300000 1328.1 869.05 1608 1399.4 1223.6 1353.1 1235 1224.4 1746.6 1764.8 TRUE FALSE FALSE 1172.422131 895.8244004 1694.933344 1456.473581 1133.337466 1327.291872 1282.634364 1363.780747 1674.604409 1754.302891 0.668312261 0.510644088 0.966157756 0.830229254 0.646032946 0.756592193 0.731136208 0.777391837 0.954569714 1 10.77668214 -9.329942464 1.058149256 0.999768677 0.733003609 0.416558176 0.113757361 0.394011475 0.79099938 0.077666403 0.020573363 4.68E-10 9.329942464 -0.266765068 KS(ph)REDLSAQPVQTK ddPTM_HeLa_CUDC101_4h_R1 1 KSREDLSAQPVQTK 14 2 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 KS(1)REDLSAQPVQTK 99.273 0.0067622 21840000 2873.3 2621.1 2466.5 2502.6 3040 2734 2730.2 2706.9 2952.7 3510.2 TRUE FALSE FALSE 2536.49613 2701.852984 2599.846451 2604.666845 2815.745257 2681.853505 2835.504729 3015.042554 2830.988456 3489.321174 0.726931114 0.774320519 0.7450866 0.746468071 0.806960757 0.768588895 0.812623598 0.864077109 0.811329286 1 11.76873068 -9.329794807 0.98478596 1.003814458 0.776491696 0.182096553 0.068273455 0.18886058 0.31922787 0.030915695 0.007631168 4.68E-10 9.329794807 -0.227322762 T(ph)PSSDVLVFDYTK ddPTM_HeLa_CUDC101_4h_R1 2 TPSSDVLVFDYTK 13 0 E9PC52;Q16576;Q16576-2;Q5JP01;Q09028-3;Q09028;Q09028-4;Q09028-2;H0YF10 E9PC52;Q09028-3 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 1 0 T(0.757)PS(0.202)S(0.04)DVLVFDYTK;T(0.966)PS(0.033)S(0.001)DVLVFDYTK ; 141.59 0.0033815 10180000 2197.5 2102.51 2013.93 1739.16 2372.5 2352.4 1807.27 1785.97 2259.68 2698.9 TRUE FALSE FALSE 1939.912381 2167.285841 2122.809148 1810.090462 2197.485402 2307.531889 1876.977009 1989.277606 2166.535034 2682.846823 0.723079814 0.807830631 0.79125246 0.674690201 0.819087166 0.860105717 0.699621385 0.741480128 0.807550776 1 11.38954897 -9.329180232 0.847532947 1.013914483 0.763399766 0.19197025 0.079756986 0.295013958 0.345251179 0.049919702 0.01062626 4.69E-10 9.329180232 -0.250514716 ASTAS(ph)PCNNNINAATAVALQEPR ddPTM_HeLa_CUDC101_4h_R1 2 ASTASPCNNNINAATAVALQEPR 23 0 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4 Q71RC2-6 LARP4 La-related protein 4 1 0 AS(0.073)T(0.079)AS(0.849)PCNNNINAATAVALQEPR;AS(0.066)T(0.066)AS(0.867)PCNNNINAATAVALQEPR ; 94.841 9.20E-05 94389000 3505.7 2857.15 2857.1 3133.5 2916.6 3044.7 2728.7 2681.1 2942.5 2463.32 TRUE FALSE FALSE 3094.76716 2945.175405 3011.563468 3261.297674 2701.448229 2986.62742 2833.946873 2986.305587 2821.208905 2448.668063 1.263857363 1.202766291 1.229878199 1.331865974 1.103231699 1.219694684 1.157342196 1.219563252 1.152140197 1 11.2577815 -9.328867736 0.962572029 0.995033685 1.217355069 0.294586553 0.072823679 0.27259273 0.436147352 0.043240796 0.010447929 4.69E-10 9.328867736 0.222321384 EEPLSEEEPCTST(ph)AIASPEKK ddPTM_HeLa_CUDC101_4h_R1 1 EEPLSEEEPCTSTAIASPEKK 21 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 EEPLSEEEPCT(0.034)S(0.249)T(0.599)AIAS(0.119)PEKK 108.79 0.00029474 6665200 2979.7 2575.3 2305.6 2343.3 2166.3 2545.3 2718.2 2622.7 2471.1 2134.2 TRUE FALSE FALSE 2630.424083 2654.641941 2430.24771 2438.869903 2006.496365 2496.752643 2823.041885 2921.257567 2369.240212 2121.505683 1.239885475 1.251300886 1.145529672 1.149593858 0.945788824 1.176877659 1.330678445 1.376973717 1.116772974 1 11.05087283 -9.328731409 0.968147976 0.995727984 1.197611427 0.169321782 0.116398931 0.627737698 1.018617665 0.090622306 0.022026775 4.69E-10 9.328731409 0.201883443 ENFTAGS(ph)DCVTLK ddPTM_HeLa_CUDC101_4h_R1 1 ENFTAGSDCVTLK 13 0 Q1W6H9 Q1W6H9 FAM110C Protein FAM110C 1 0 ENFT(0.019)AGS(0.947)DCVT(0.034)LK 165.02 2.46E-05 8711900 1995.2 1533.6 1846.3 1966.2 2259.4 1668.1 2034.3 1931.9 1407.7 544.77 TRUE FALSE FALSE 1761.325681 1580.848398 1946.116563 2046.390135 2092.728563 1636.283772 2112.763632 2151.819687 1349.67401 541.5296838 3.252500709 2.919227598 3.593739403 3.778906671 3.864476179 3.021595714 3.901473355 3.973595079 2.492336155 1 9.080896611 -9.328231971 0.362236287 3.47E-16 3.794876031 0.600824901 0.546147082 0.551813132 0.091514582 0.841309111 0.119242322 4.70E-10 9.328231971 3.794876031 DRSGMAGGQLGVHRREGR ddPTM_HeLa_CUDC101_4h_R1 1 DRSGMAGGQLGVHRREGR 18 3 P0C7I6-6;P0C7I6-8 P0C7I6-6 0 0 50.053 0.027576 19001000 7408.2 7093.8 6918.1 6813.9 7235.7 7359.9 5985 6195.6 6857.3 8963.5 FALSE FALSE TRUE 6539.822026 7312.35157 7292.113412 7091.800294 6701.936827 7219.52217 6215.843455 6900.882061 6574.639192 8910.184703 0.733971544 0.820673399 0.818402048 0.795920683 0.75216587 0.810255052 0.697611067 0.774493716 0.737879114 1 13.12123962 -9.365151141 0.802013901 1.01951998 0.772780987 0 0.089188615 0.244174402 0.244390305 0.040060246 0.007667773 4.31E-10 9.365151141 -0.246738993 Y(ph)Y(ph)S(ph)FFDLNPKY(ph)DAVR ddPTM_HeLa_CUDC101_4h_R1 1 YYSFFDLNPKYDAVR 15 1 G3V1L6;Q9BQL6-4;Q9BQL6-2;Q9BQL6 G3V1L6 FERMT1 Fermitin family homolog 1 4 0 Y(1)Y(1)S(1)FFDLNPKY(1)DAVR 40.801 0.0033771 0 1045.3 942.24 1032.4 902.62 1041.1 974.24 823.63 951.91 1129.4 1270.5 TRUE FALSE FALSE 922.7715186 971.2692976 1088.214667 939.4327451 964.3001272 955.6579952 855.397685 1060.271587 1082.845654 1262.943009 0.730651749 0.769052356 0.86164986 0.743844131 0.763534158 0.756691306 0.677305055 0.839524491 0.857398668 1 10.30257382 -9.327620547 0.780665472 1.019835596 0.763163902 0.429699213 0.06576481 0.296742611 0.283434348 0.049392013 0.009733474 4.70E-10 9.327620547 -0.256671695 VQT(ph)TPPPAVQGQK ddPTM_HeLa_CUDC101_4h_R1 1 VQTTPPPAVQGQK 13 0 Q2M2I8-2;Q2M2I8;E9PG46 Q2M2I8-2 AAK1 AP2-associated protein kinase 1 1 0 VQT(0.5)T(0.5)PPPAVQGQK 148.89 0.0019105 82275000 3211.8 2891 2515.5 2723 3026.8 2884 2903.2 2879.7 3087 3118 TRUE FALSE FALSE 2835.317673 2980.068283 2651.495539 2834.05571 2803.518994 2828.992505 3015.177397 3207.513408 2959.752553 3099.453997 0.914779724 0.961481695 0.855471816 0.914372568 0.904520279 0.912738988 0.972809211 1.034864015 0.954927079 1 11.59779838 -9.32723565 0.979320004 1.001229156 0.930141313 0.086879719 0.04752217 0.679003637 1.13356117 0.034648009 0.008536255 4.71E-10 9.32723565 -0.071087843 QGS(ph)FTIEKPSPNIPIELIPHINK ddPTM_HeLa_CUDC101_4h_R1 2 QGSFTIEKPSPNIPIELIPHINK 23 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 QGS(0.92)FT(0.068)IEKPS(0.013)PNIPIELIPHINK;QGS(0.871)FT(0.128)IEKPSPNIPIELIPHINK ; 153.06 8.90E-08 317720000 7579.9 6789.4 6502.8 6549.4 7674 6700.6 6491.4 6864 6986.6 7979.6 TRUE FALSE FALSE 6691.395612 6998.573367 6854.361038 6816.512841 7107.904309 6572.797219 6741.775472 7645.370015 6698.609391 7932.136984 0.843580441 0.882306165 0.864125399 0.859353899 0.896089455 0.828628809 0.849931801 0.963847451 0.844489878 1 12.95349388 -9.326812694 0.927949248 1.004211086 0.869684458 0 0.059407539 0.28869856 0.422841554 0.027281727 0.006374534 4.71E-10 9.326812694 -0.134526628 YMAENPT(ph)AGVVQEEEEDNLEYDSDGNPIAPTKK ddPTM_HeLa_CUDC101_4h_R1 1 YMAENPTAGVVQEEEEDNLEYDSDGNPIAPTKK 33 1 A0A0A0MSJ0;Q86XP3-2;Q86XP3;J3KRE3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 1 0 Y(0.024)MAENPT(0.389)AGVVQEEEEDNLEY(0.26)DS(0.325)DGNPIAPT(0.001)KK 40.254 0.026939 10578000 2597.5 2287 2050.7 2340.6 2706.3 2473 2315.4 2646.9 2930.6 2995 TRUE FALSE FALSE 2293.024988 2357.459759 2161.567045 2436.059785 2506.661641 2425.831645 2404.705754 2948.212397 2809.799428 2977.185607 0.770198869 0.791841716 0.726043764 0.818242497 0.841956791 0.814806991 0.807711064 0.990268255 0.943777043 1 11.53973345 -9.326505916 1.027904346 1.000986026 0.813563262 0.44272921 0.066845766 0.330979869 0.620933517 0.045312085 0.011722793 4.72E-10 9.326505916 -0.187422764 DRYDSFIELQEK ddPTM_HeLa_CUDC101_4h_R1 2 DRYDSFIELQEK 12 1 Q9NSD9-2;Q9NSD9 Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit 0 0 ; ; 183.06 1.72E-10 22061000 6517 6742.7 6103.5 6540.4 7995.8 7552.3 6739.2 6202.9 6540.4 7301.6 FALSE FALSE TRUE 5753.087139 6950.434595 6433.473672 6807.145782 7405.965764 7408.25246 6999.133201 6909.013063 6270.801944 7258.169758 0.792636068 0.957601548 0.886376853 0.93785982 1.02036271 1.020677761 0.964311036 0.951894664 0.863964629 1 12.82539008 -5.966089915 5.079182936 0.903800301 0.989402583 0.366378255 0.055140163 0.23891169 15.48129217 0.011888781 0.021580091 1.08E-06 5.966089915 0.085602282 TSMPS(ph)GDESIDEK ddPTM_HeLa_CUDC101_4h_R1 2 TSMPSGDESIDEK 13 0 Q03468 Q03468 ERCC6 DNA excision repair protein ERCC-6 1 0 T(0.004)S(0.026)MPS(0.97)GDESIDEK;T(0.053)S(0.039)MPS(0.9)GDES(0.008)IDEK ; 164.2 3.06E-05 23078000 4052.8 3793.4 3978.2 3502.6 4450.9 4371.9 4326.5 3424.4 4913 6030.2 TRUE FALSE FALSE 3577.736928 3910.270158 4193.273525 3645.451168 4122.565974 4288.513292 4493.374554 3814.219854 4710.484061 5994.332102 0.596853305 0.652327914 0.699539741 0.608149683 0.687744006 0.715428044 0.749603872 0.636304394 0.785823004 1 12.5493833 -9.326363544 0.961572385 1.007523472 0.66719996 0.507178306 0.078136122 0.161236161 0.257601163 0.039096165 0.009470444 4.72E-10 9.326363544 -0.340323512 (ac)LPTAS(ph)S(ph)KR ddPTM_HeLa_CUDC101_4h_R1 1 LPTASSKR 8 1 D6RBJ8;Q7Z5H3-5 D6RBJ8 ARHGAP22 2 0 LPT(0.053)AS(0.974)S(0.974)KR 52.636 0.040498 3434200 2884.4 2617.3 2606.4 2390.7 3007.9 2822.8 2343.4 2450.1 2574.9 3208.8 TRUE FALSE FALSE 2546.295004 2697.935911 2747.309868 2488.203079 2786.01321 2768.959793 2433.785723 2729.00948 2468.761532 3189.713915 0.798283192 0.845823789 0.861302907 0.780070924 0.873436704 0.868090326 0.763010661 0.855565594 0.773975848 1 11.63921132 -9.325663627 0.869550131 1.00864691 0.828606507 0 0.078583857 0.253375134 0.31648308 0.031141055 0.006833011 4.72E-10 9.325663627 -0.180040403 TPTSSPASSPLVAKK(ac)PLTTTPR ddPTM_HeLa_CUDC101_4h_R1 2 TPTSSPASSPLVAKKPLTTTPR 22 2 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 0 1 ; TPTSSPASSPLVAK(0.035)K(0.965)PLTTTPR;TPTSSPASSPLVAK(0.004)K(0.996)PLTTTPR 202.61 9.22E-22 3017900 507.79 564.92 810.3 903.65 1112.21 1413.26 1262.19 1371.87 268.12 438.91 FALSE TRUE FALSE 448.267626 582.3245156 854.107269 940.5047529 1030.164484 1386.30442 1310.873091 1528.038136 257.0679801 436.2993438 1.027431355 1.334690331 1.957617588 2.155640998 2.361141493 3.177415781 3.004526845 3.502270075 0.589200932 1 8.769174494 -5.906112441 0.626044644 0.966008922 3.503436555 0.957144094 0.198415669 0.099976749 0.069052061 0.033522177 0.126249621 1.24E-06 5.906112441 2.537427633 up MTGSAPPPS(ph)PTPNK ddPTM_HeLa_CUDC101_4h_R1 7 MTGSAPPPSPTPNK 14 0 Q9UBW7 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 1 0 MTGSAPPPS(0.5)PT(0.5)PNK;MTGS(0.005)APPPS(0.588)PT(0.407)PNK;MTGS(0.001)APPPS(0.892)PT(0.107)PNK;MTGS(0.007)APPPS(0.958)PT(0.035)PNK;MT(0.002)GSAPPPS(0.975)PT(0.023)PNK;MTGS(0.007)APPPS(0.988)PT(0.004)PNK;MT(0.001)GSAPPPS(0.862)PT(0.137)PNK ;;;;;; 176.43 2.05E-07 60885500 30258.6 26094.4 26071.5 27446.1 25909.3 26953.6 27482.7 26573.1 24781.7 29600.9 TRUE FALSE FALSE 26711.73278 26898.33753 27481.00415 28565.47059 23998.02256 26439.50499 28542.71695 29598.07429 23760.18784 29424.83253 0.907795575 0.914137319 0.933939186 0.97079467 0.815570404 0.898543941 0.97002139 1.005887604 0.807487615 1 14.84474658 -9.325600714 0.973295455 1.001458739 0.924088644 0 0.077242628 0.676672186 1.113681303 0.03746634 0.009195525 4.72E-10 9.325600714 -0.077370095 KDS(ph)EEEVSLLGSQDIEEGNHQVEDGCR ddPTM_HeLa_CUDC101_4h_R1 1 KDSEEEVSLLGSQDIEEGNHQVEDGCR 27 1 Q9Y487 Q9Y487 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2 1 0 KDS(0.813)EEEVS(0.187)LLGSQDIEEGNHQVEDGCR 92.424 2.01E-06 6393300 1616 1311.9 1233.9 1506.4 1035.1 1239.1 1283.7 1066.4 1072.1 724.15 TRUE FALSE FALSE 1426.57493 1352.318084 1300.608366 1567.837503 958.7427352 1215.466232 1333.212739 1187.794665 1027.907584 719.8427236 1.981786969 1.878629928 1.806795184 2.178027855 1.331878067 1.688516383 1.852088929 1.650075255 1.427961346 1 9.49153792 -9.324542701 0.988841731 0.988096035 1.805363249 0.441831421 0.244651092 0.265933398 0.454956404 0.156404023 0.039053274 4.74E-10 9.324542701 0.817267214 EDLSPAFDHS(ph)PNK ddPTM_HeLa_CUDC101_4h_R1 4 EDLSPAFDHSPNK 13 0 K7EIY0;K7ENP9;K7EIE9;D3DUJ3;K7EQG9;P17706-3;P17706-2;P17706-4;P17706 K7EIY0 PTPN2 Protein-tyrosine-phosphatase;Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 2 1 0 EDLS(0.004)PAFDHS(0.996)PNK;EDLSPAFDHS(1)PNK;EDLS(0.002)PAFDHS(0.998)PNK;EDLS(0.006)PAFDHS(0.994)PNK ;;; 117.79 0.0016294 149084000 22564.5 17447.1 16513.7 15425.4 16207.8 17411.2 13408.9 9870.5 20383 24957.6 TRUE FALSE FALSE 19919.52352 17984.62447 17406.48057 16054.51449 15012.18288 17079.11037 13926.08576 10994.11782 19542.80411 24809.15109 0.802910323 0.724918979 0.701615324 0.647120671 0.605106673 0.688419781 0.561328589 0.443147683 0.787725628 1 14.59858475 -5.8527288 0.106804499 1.315298751 1.20E-21 0.703548239 0.078128799 3.666894304 0.128879673 0.525666443 1.065760262 1.40E-06 5.8527288 -1.315298751 AGVNSDS(ph)PNNCSGK ddPTM_HeLa_CUDC101_4h_R1 4 AGVNSDSPNNCSGK 14 0 F8WE62;Q9Y4C1 F8WE62 KDM3A Lysine-specific demethylase 3A 1 0 AGVNS(0.003)DS(0.932)PNNCS(0.065)GK;AGVNS(0.001)DS(0.998)PNNCSGK;AGVNS(0.232)DS(0.768)PNNCSGK;AGVNSDS(0.976)PNNCS(0.024)GK ;;; 249.36 5.33E-56 16725500 13525.1 10607.1 12130.3 12279.1 12436.5 10305.2 9442.24 6139.62 12395.7 6852.29 TRUE FALSE FALSE 11939.70828 10933.89218 12786.10071 12779.89477 11519.08417 10108.64548 9806.43036 6838.529524 11884.744 6811.532274 1.752866727 1.60520302 1.877125468 1.876214376 1.691114966 1.48404868 1.439680525 1.003963462 1.744797429 1 12.73376366 -9.324179172 1.012007239 0.994712845 1.613788278 0 0.331225867 0.403940351 0.730721303 0.181467323 0.046383909 4.74E-10 9.324179172 0.619075433 S(ph)RDSGDENEPIQER ddPTM_HeLa_CUDC101_4h_R1 1 SRDSGDENEPIQER 14 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 S(0.598)RDS(0.402)GDENEPIQER 123.68 0.0062008 54840000 1250.5 1143.4 1144 1231 1241.5 1220.5 913.89 1186.2 1493.7 1530.3 TRUE FALSE FALSE 1103.918286 1178.626799 1205.8481 1281.205501 1149.917018 1197.220996 949.1390434 1321.232213 1432.129054 1521.197708 0.725690211 0.77480185 0.792696501 0.842234704 0.755928708 0.787025243 0.623941936 0.868547334 0.941448338 1 10.57099195 -9.323878067 0.869264303 1.011720188 0.766550668 0.594100751 0.065142254 0.313322574 0.391383163 0.052398833 0.011523263 4.74E-10 9.323878067 -0.24516952 NIDDGTSDRPY(ph)SHALVAGIDRY(ph)PRK ddPTM_HeLa_CUDC101_4h_R1 1 NIDDGTSDRPYSHALVAGIDRYPRK 25 3 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 2 0 NIDDGT(0.017)S(0.017)DRPY(0.881)S(0.113)HALVAGIDRY(0.972)PRK 43.611 0.002633 0 898.47 700.38 1060.5 919.69 911.5 805.55 687.31 674.87 1157.4 1268.1 TRUE FALSE FALSE 793.1527086 721.9578776 1117.833838 957.1989334 844.260461 790.1854759 713.8197769 751.6944729 1109.691482 1260.557285 0.629207985 0.57272913 0.8867775 0.759345842 0.669751761 0.626854079 0.566273176 0.596319169 0.88031817 1 10.29984597 -9.323781421 0.716151354 1.037676712 0.661860926 0.543455879 0.098730571 0.481563424 0.372196463 0.112005578 0.020500114 4.74E-10 9.323781421 -0.375815786 SET(ph)PPHWR ddPTM_HeLa_CUDC101_4h_R1 1 SETPPHWR 8 0 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 S(0.001)ET(0.999)PPHWR 92.239 0.037186 8057800 2510.5 2352.5 2132.7 1925.3 2428.4 1981.1 2275 2758.1 2382.5 2685.2 TRUE FALSE FALSE 2216.222996 2424.977737 2248.000213 2003.822056 2249.26177 1943.313818 2362.747512 3072.070955 2284.292342 2669.228311 0.830286037 0.908493937 0.842191057 0.750712124 0.842663687 0.728043311 0.885179998 1.150921014 0.855787544 1 11.382207 -9.323551277 0.89376441 1.005946306 0.857064531 0 0.117577114 0.875409143 1.171173309 0.089994359 0.020352645 4.75E-10 9.323551277 -0.148881774 SLTTECHLLDS(ph)PGLNCSNPFTQLER ddPTM_HeLa_CUDC101_4h_R1 2 SLTTECHLLDSPGLNCSNPFTQLER 25 0 Q15398-1;Q15398 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 SLTTECHLLDS(1)PGLNCSNPFTQLER;SLTTECHLLDS(1)PGLNCSNPFTQLER ; 140.45 7.40E-11 20660400 4381.2 3236.2 2987.7 2825.2 4631.5 3827.6 3737.8 2807 4249.9 914.34 TRUE FALSE FALSE 3867.642377 3335.903486 3149.224099 2940.423868 4289.843472 3754.594907 3881.968198 3126.537534 4074.717323 908.901465 4.255293369 3.670258674 3.464868548 3.23514042 4.719811374 4.130915233 4.271055057 3.439908124 4.483123287 1 9.827980089 -9.323359822 0.72066547 0.680937223 3.949516096 0 1.16553174 0.254113601 0.199524958 0.515752911 0.094984915 4.75E-10 9.323359822 3.268578872 INSSGESGDES(ph)DEFLQSR ddPTM_HeLa_CUDC101_4h_R1 2 INSSGESGDESDEFLQSR 18 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 INSSGES(0.002)GDES(0.998)DEFLQSR;INSSGESGDES(1)DEFLQSR ; 274.68 1.84E-86 25720700 2120.98 1778.92 2114.11 1880.2 2036.31 1536.01 1646.36 2685.88 1826.58 2409.37 TRUE FALSE FALSE 1872.36194 1833.726417 2228.405181 1956.882683 1886.095468 1506.713168 1709.860657 2991.629722 1751.287599 2395.03896 0.781766798 0.765635318 0.930425441 0.817056722 0.787500955 0.629097561 0.713917679 1.249094387 0.73121466 1 11.22583341 -9.323284463 0.971773962 1.003453611 0.819928083 0 0.178253061 0.862446616 1.415427968 0.113094862 0.027805367 4.75E-10 9.323284463 -0.183525527 TSGAPGS(ph)PQT(ph)PPER ddPTM_HeLa_CUDC101_4h_R1 1 TSGAPGSPQTPPER 14 0 K7ESM2;K7ELS4;K7EJA3;K7ERG7;Q96MH2;K7EIM4 K7ESM2 HEXIM2 Protein HEXIM2 2 0 T(0.001)SGAPGS(0.999)PQT(1)PPER 110.57 0.012691 8200400 2592.8 2287.1 2298.3 2432.1 2601.7 2389.3 2064 2119.6 2347.2 2811.3 TRUE FALSE FALSE 2288.875914 2357.56284 2422.55305 2531.29155 2409.777774 2343.728083 2143.609171 2360.886696 2250.447423 2794.578263 0.819041623 0.84362026 0.86687608 0.905786603 0.86230463 0.838669689 0.767059989 0.844809654 0.805290534 1 11.44841486 -9.323187864 0.806594882 1.011446783 0.842158471 0 0.068902953 0.320603588 0.332882238 0.035729384 0.007310891 4.75E-10 9.323187864 -0.169288312 S(ph)GCSDLEEAVDSGADKK ddPTM_HeLa_CUDC101_4h_R1 2 SGCSDLEEAVDSGADKK 17 1 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 S(0.613)GCS(0.385)DLEEAVDS(0.002)GADKK;S(0.812)GCS(0.188)DLEEAVDSGADKK ; 129.89 0.00014007 40162000 8145.5 6289.2 5870.7 6577.7 7255.5 6796.4 6540.3 6438.3 6112.2 3915.7 TRUE FALSE FALSE 7190.696838 6482.962797 6188.0878 6845.967037 6720.27622 6666.769994 6792.561562 7171.210047 5860.252529 3892.409242 1.847364033 1.665539874 1.589783452 1.758799399 1.726508135 1.712761834 1.745078983 1.842357676 1.505559196 1 11.92644769 -9.322956185 0.804090407 0.945931377 1.73914652 0.478514627 0.169775845 0.151889686 0.156513761 0.079186861 0.016160039 4.75E-10 9.322956185 0.793215142 NSSLGS(ph)PSNLCGS(ph)PPGSIR ddPTM_HeLa_CUDC101_4h_R1 1 NSSLGSPSNLCGSPPGSIR 19 0 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 2 0 NS(0.002)S(0.01)LGS(0.915)PS(0.16)NLCGS(0.909)PPGS(0.004)IR 107.57 0.0037929 26999000 1777.6 1677.9 1303.7 1475.3 1735.7 1723.6 1814.7 1262.4 1892.9 950.86 TRUE FALSE FALSE 1569.232423 1729.59411 1374.181965 1535.469111 1607.660869 1690.725202 1884.693587 1406.106513 1814.873861 945.2042424 1.660204591 1.82986283 1.453846591 1.624483939 1.700860827 1.788740598 1.993953796 1.487621881 1.920086453 1 9.884482294 -9.322858154 0.463317308 0.80199307 1.733937023 0 0.326282525 0.691371737 0.191568693 0.305268081 0.042949604 4.75E-10 9.322858154 0.931943953 AFKPEETSSNSDPPS(ph)PPVLNNSHPVPR ddPTM_HeLa_CUDC101_4h_R1 2 AFKPEETSSNSDPPSPPVLNNSHPVPR 27 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 AFKPEETSSNSDPPS(1)PPVLNNSHPVPR;AFKPEETSSNS(0.002)DPPS(0.998)PPVLNNSHPVPR ; 133.17 8.68E-12 41668000 6774.8 5904.9 6006.6 5623 6904.8 6937.9 6034.2 5646.2 6690.2 7495.6 TRUE FALSE FALSE 5980.668214 6086.82297 6331.334965 5852.330245 6395.44666 6805.571117 6266.941115 6288.940585 6414.427124 7451.015838 0.80266481 0.816911828 0.849727756 0.785440586 0.858332179 0.913374936 0.841085464 0.844038011 0.860879545 1 12.86322141 -9.322746346 0.987343134 1.002394449 0.837875684 0.162617534 0.053199211 0.223213093 0.38075294 0.026391938 0.00659673 4.76E-10 9.322746346 -0.164518765 LLS(ph)GSESSSK ddPTM_HeLa_CUDC101_4h_R1 2 LLSGSESSSK 10 0 G3XAI9;Q5BKY9-2;Q5BKY9 G3XAI9 FAM133B Protein FAM133B 1 0 LLS(0.991)GS(0.008)ES(0.001)S(0.001)SK;LLS(0.969)GS(0.025)ES(0.005)SSK ; 88.187 0.031228 50262000 3504 2980.08 3023.2 3203.2 3751.3 3168.8 3047 2871.5 4168.7 3711.9 TRUE FALSE FALSE 3093.266432 3071.892733 3186.643337 3333.840341 3474.574073 3108.36042 3164.523811 3198.379953 3996.864422 3689.821454 0.838324149 0.832531539 0.863630768 0.903523486 0.941664554 0.842414859 0.857636027 0.866811577 1.083213503 1 11.84933529 -9.322441632 1.004499416 1.001368591 0.867673496 0.707787316 0.042260406 0.255941285 0.455105556 0.024745553 0.006294118 4.76E-10 9.322441632 -0.133695095 NIIHGSDS(ph)VESAEK ddPTM_HeLa_CUDC101_4h_R1 1 NIIHGSDSVESAEK 14 0 P15531;P15531-2 P15531 NME1 Nucleoside diphosphate kinase A 1 0 NIIHGS(0.216)DS(0.783)VES(0.001)AEK 132.51 9.57E-05 0 5759.1 4617.7 3761.2 4285.8 5092.3 4069.8 3528.8 4256.6 4526.3 1295.6 TRUE FALSE FALSE 5084.027028 4759.965864 3964.541849 4460.593449 4716.651174 3992.175346 3664.906998 4741.154138 4339.723998 1287.893714 3.947551708 3.695930661 3.078314466 3.46347948 3.662298468 3.099770815 2.845659513 3.681324078 3.369628994 1 10.33079782 -9.322241127 0.960333474 0.946329272 3.440347286 0.021324247 0.78747868 0.158083029 0.252214023 0.280297768 0.068208956 4.76E-10 9.322241127 2.494018014 TVANLLSGKS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 TVANLLSGKSPR 12 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 TVANLLS(0.003)GKS(0.997)PR;TVANLLS(0.002)GKS(0.998)PR ; 107.13 0.0036365 2042450000 15467.1 14290.9 13089.3 13528.9 17084 15152.3 14387.9 13426.2 18822.6 19098.7 TRUE FALSE FALSE 13654.06998 14731.18569 13796.94715 14080.66702 15823.74736 14863.29512 14942.84612 14954.58434 18046.72446 18985.10008 0.719199263 0.775934055 0.726725015 0.74166936 0.83348243 0.78289264 0.787082821 0.787701106 0.950573048 1 14.21257998 -9.321520761 0.958145937 1.0051959 0.767376174 0.845799963 0.034941241 0.163839265 0.260034718 0.027668541 0.006724622 4.77E-10 9.321520761 -0.237819726 DSAIPVESDTDDEGAPR ddPTM_HeLa_CUDC101_4h_R1 3 DSAIPVESDTDDEGAPR 17 0 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 0 0 ;; ;; 176.25 2.49E-07 16097300 8368.47 8189.79 7967.01 7344.12 8373.94 7874.48 6655.45 6165.16 7904 7321.03 FALSE FALSE TRUE 7387.530632 8442.107723 8397.730659 7643.644958 7756.211129 7724.287414 6912.152936 6866.976894 7578.193775 7277.484188 1.015121496 1.160031064 1.153933206 1.050314197 1.065781928 1.061395286 0.949799788 0.943592142 1.041320541 1 12.82922408 -4.75102865 23.82643854 1.038868112 0.946695836 0.347513385 0.056020704 133.6722912 305915.7523 0.009413502 0.034376849 1.77E-05 4.75102865 -0.092172276 IHPMAYQLQLQAAS(ph)NFKSPVK ddPTM_HeLa_CUDC101_4h_R1 2 IHPMAYQLQLQAASNFKSPVK 21 1 Q5SRQ6;P67870 Q5SRQ6 CSNK2B Casein kinase II subunit beta 1 0 IHPMAYQLQLQAAS(0.5)NFKS(0.5)PVK;IHPMAYQLQLQAAS(0.661)NFKS(0.339)PVK ; 65.231 0.0046988 340480000 7615.7 6948 7022.9 7027.7 8636 6928.7 5948.9 6123.8 7304.8 9530.2 TRUE FALSE FALSE 6722.999191 7162.059645 7402.579217 7314.319982 7998.939485 6796.546592 6178.351066 6820.908639 7003.693052 9473.513947 0.709662669 0.756008772 0.781397405 0.772080985 0.844347676 0.717426145 0.652171 0.719997741 0.739291998 1 13.20968394 -9.321203905 0.768761411 1.022379443 0.742427858 0 0.093823648 0.305150892 0.281530776 0.05486164 0.010754457 4.77E-10 9.321203905 -0.279951585 YLTNQK(ac)NSNSK(ac)NDRR ddPTM_HeLa_CUDC101_4h_R1 2 YLTNQKNSNSKNDRR 15 3 B1AK63;Q9HAF1-2;Q9HAF1;Q9HAF1-4;Q9HAF1-3 B1AK63 MEAF6 Chromatin modification-related protein MEAF6 0 2 ; YLTNQK(1)NSNSK(1)NDRR;YLTNQK(1)NSNSK(1)NDRR 170.26 2.66E-07 158009000 2689 2864.8 3397.2 4054.6 4542.3 4764.1 5105.3 5153 1178.85 1199.24 FALSE TRUE FALSE 2373.799496 2953.061092 3580.862908 4219.964113 4207.223579 4673.23273 5302.213131 5739.596691 1130.257304 1192.106867 1.991264006 2.477178157 3.003810318 3.539920983 3.529233573 3.920145801 4.44776662 4.814666243 0.948117434 1 10.21929786 -5.84770285 0.263672708 0.76555436 6.047525637 0.989092919 0.133326743 0.290661708 0.033799247 0.128346057 0.504258991 1.42E-06 5.84770285 5.281971276 up NTEEEGLK(ac)YK ddPTM_HeLa_CUDC101_4h_R1 2 NTEEEGLKYK 10 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 0 1 ; NTEEEGLK(1)YK;NTEEEGLK(1)YK 157.38 9.88E-06 1486300 627.91 724.24 785.28 743.18 1673.45 1995.51 1025.98 1310.27 737.06 686.29 FALSE TRUE FALSE 554.3073416 746.552976 827.7346121 773.4900927 1550.002927 1957.448971 1065.552392 1459.425841 706.6780748 682.2079166 0.812519656 1.09431884 1.213317219 1.133804041 2.272038905 2.869285043 1.561917366 2.139268403 1.035869062 1 9.414067686 -5.810719207 4.663279478 0.956492382 2.215488671 0.764885301 0.314266258 0.0683331 3.15891854 0.046937392 0.088687595 1.55E-06 5.810719207 1.258996289 EDAS(ph)PLPHVCCCK ddPTM_HeLa_CUDC101_4h_R1 2 EDASPLPHVCCCK 13 0 C9J7Z4;Q8NCE0-5;Q8NCE0-3;Q8NCE0-2;Q8NCE0 C9J7Z4 TSEN2 tRNA-splicing endonuclease subunit Sen2 1 0 EDAS(1)PLPHVCCCK;EDAS(1)PLPHVCCCK ; 73.887 0.028295 26633000 7975.2 6046.6 5749.4 5715 5849.4 6654.8 6176.3 4964.8 6424.2 1908.72 TRUE FALSE FALSE 7040.359146 6232.888579 6060.229955 5948.082402 5417.901416 6527.870778 6414.52196 5529.972764 6159.391757 1897.366849 3.710594581 3.285020282 3.194021209 3.134914267 2.855484389 3.44048953 3.380749466 2.914551167 3.24628406 1 10.88978293 -9.320783534 0.932941279 0.933390083 3.263497805 0 0.723023193 0.133584322 0.198765636 0.218622049 0.051799563 4.78E-10 9.320783534 2.330107721 RDLFAFQES(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 2 RDLFAFQESPPR 12 1 E7EX48;P51957-3;P51957-2;P51957 E7EX48 NEK4 Serine/threonine-protein kinase Nek4 1 0 RDLFAFQES(1)PPR;RDLFAFQES(1)PPR ; 105.53 0.0037499 10929900 3542.4 2960.9 3225.4 2825.2 3778.6 3567.9 2980.1 2651.5 3609 3560.8 TRUE FALSE FALSE 3127.165242 3052.121819 3399.77488 2940.423868 3499.860206 3499.848252 3095.043455 2953.336042 3460.235492 3539.620203 0.883474797 0.862273816 0.960491433 0.830717337 0.988767157 0.98876378 0.874399873 0.834365235 0.977572534 1 11.78937885 -9.320118357 1.012245156 1.000752356 0.904658397 0.270756163 0.05590779 0.564234496 1.022862751 0.039279418 0.010099544 4.78E-10 9.320118357 -0.096093959 YPES(ph)NRTPVKPSSVEEEDSFFR ddPTM_HeLa_CUDC101_4h_R1 1 YPESNRTPVKPSSVEEEDSFFR 22 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 Y(0.113)PES(0.449)NRT(0.401)PVKPS(0.017)S(0.02)VEEEDSFFR 40.622 0.039244 118820000 1998.1 1607.8 1535.2 1556.9 2083.1 1720.7 1604.4 1156.2 1430.6 1184.7 TRUE FALSE FALSE 1763.885747 1657.334412 1618.197556 1620.397111 1929.433863 1687.880514 1666.282245 1287.817134 1371.630062 1177.653352 1.497797076 1.407319403 1.374086486 1.375954231 1.638371648 1.433257513 1.414917423 1.09354517 1.164714608 1 10.20169922 -9.320071858 0.922898729 0.986584786 1.417003433 0.452320952 0.136917199 0.338585516 0.490813511 0.10187578 0.023904066 4.79E-10 9.320071858 0.430418647 TAANKS(ph)PCETISSPSSTLESK ddPTM_HeLa_CUDC101_4h_R1 2 TAANKSPCETISSPSSTLESK 21 1 Q9C0D5 Q9C0D5 TANC1 Protein TANC1 1 0 T(0.01)AANKS(0.913)PCET(0.063)IS(0.011)S(0.003)PSSTLESK;T(0.056)AANKS(0.912)PCET(0.009)IS(0.009)S(0.014)PSSTLESK ; 101.86 9.66E-05 44130000 4961 3992.6 4006.8 3776.35 4474.7 4193 3854.5 3557.87 4390.2 2853.37 TRUE FALSE FALSE 4379.4791 4115.607274 4223.419728 3930.365876 4144.610296 4113.025511 4003.169356 3962.883539 4209.234098 2836.398028 1.544028397 1.450997791 1.489008131 1.385689116 1.461223092 1.450087565 1.411356698 1.397153538 1.484006848 1 11.46984428 -9.320060529 0.943831939 0.988188889 1.452991506 0 0.153822377 0.125104871 0.191547019 0.04102222 0.009842528 4.79E-10 9.320060529 0.464802618 DSDDSAATPQDETVEER ddPTM_HeLa_CUDC101_4h_R1 2 DSDDSAATPQDETVEER 17 0 E7EPJ7;O75962-5;O75962-4;O75962;E7EWP2;O75962-2;A0A1W2PRD7 E7EPJ7 TRIO Triple functional domain protein 0 0 ; ; 230.26 3.64E-33 14924900 3521 2727 2745.5 2642.6 2557.2 2640.1 2400.7 2717.4 2482.1 3041.5 FALSE FALSE TRUE 3108.273717 2811.015638 2893.930035 2750.37665 2368.560451 2589.744491 2493.295803 3026.737832 2379.786787 3023.409023 1.028069207 0.929750363 0.957174505 0.909693869 0.783407218 0.856564385 0.824663744 1.001101012 0.787120356 1 11.56196045 -6.617363183 1.29500468 1.012272827 0.864686487 0 0.09107285 0.219224664 0.738819958 0.009729507 0.015643316 2.41E-07 6.617363183 -0.14758634 DSDGRPDWEVAAEAWDNHLR ddPTM_HeLa_CUDC101_4h_R1 1 DSDGRPDWEVAAEAWDNHLR 20 1 K7EQL6;Q8NFA0;P35125-3;P35125-2;P35125 K7EQL6 USP32;USP6 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 32;Ubiquitin carboxyl-terminal hydrolase 6 0 0 136.36 1.16E-05 3671500 4095.4 2988.9 3414.5 3302.1 3297.8 3696.9 3298.5 3210.4 3362.1 3406.7 FALSE FALSE TRUE 3615.34342 3080.984466 3599.098198 3436.773911 3054.527864 3626.387792 3425.72425 3575.858959 3223.512815 3386.436797 1.067595126 0.90980126 1.062797983 1.01486433 0.901988741 1.070856481 1.011601413 1.055935537 0.95188926 1 11.72555235 S(ph)VSPTFLNPSDENLK ddPTM_HeLa_CUDC101_4h_R1 1 SVSPTFLNPSDENLK 15 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 S(0.865)VS(0.13)PT(0.006)FLNPSDENLK 298.1 1.11E-122 75265000 3418.2 3121.7 2676 2740.5 2919.8 2841 2733.6 2794.8 3293.8 2493.9 TRUE FALSE FALSE 3017.523778 3217.875877 2820.672654 2852.269435 2704.412171 2786.812658 2839.035868 3112.948735 3158.02817 2479.066172 1.217201788 1.298019356 1.137796436 1.150541872 1.09089955 1.124138069 1.145203746 1.255694088 1.273878126 1 11.27558107 -9.319671143 1.063659719 1.00078963 1.175676754 0 0.103062588 0.332851147 0.678930825 0.042885311 0.011580747 4.79E-10 9.319671143 0.174887124 FCDS(ph)PTSDLEMR ddPTM_HeLa_CUDC101_4h_R1 2 FCDSPTSDLEMR 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 FCDS(0.787)PT(0.208)S(0.005)DLEMR;FCDS(0.807)PT(0.178)S(0.015)DLEMR ; 255.24 1.65E-56 63555000 4927 3701 3950 3696.9 4088.7 3565.1 3626.4 3619.4 4695 1744.21 TRUE FALSE FALSE 4349.464529 3815.023423 4163.548948 3847.675561 3787.084747 3497.101657 3766.271463 4031.417866 4501.470113 1733.835361 2.508579895 2.200337765 2.401351963 2.219170082 2.184223965 2.016974469 2.172219777 2.325144564 2.596250032 1 10.7597512 -9.319632151 0.93737825 0.96500987 2.258635046 0 0.505626382 0.133363884 0.200847149 0.121353047 0.028936211 4.79E-10 9.319632151 1.293625176 RWDQTADQTPGAT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 RWDQTADQTPGATPK 15 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 RWDQTADQTPGAT(1)PK 110.64 0.023785 204420000 5825.9 5113.1 4839.9 4561.1 5639.1 5463.9 4807.4 4296.3 4946.4 4889.3 TRUE FALSE FALSE 5142.996833 5270.62855 5101.559634 4747.121373 5223.114828 5359.685211 4992.823028 4785.373426 4742.507298 4860.218226 1.058182286 1.084442777 1.049656496 0.976730087 1.07466673 1.10276637 1.027283714 0.984600527 0.975780732 1 12.24680538 -9.31950969 1.077333498 1.000355914 1.046930056 0.233699498 0.039211282 0.738484869 1.552412978 0.025442189 0.006957281 4.79E-10 9.31950969 0.046574142 DSEAFCHR ddPTM_HeLa_CUDC101_4h_R1 2 DSEAFCHR 8 0 C9JP16;O75718 C9JP16 CRTAP Cartilage-associated protein 0 0 ; ; 127.46 0.0055957 6907100 8279.1 4031.5 7955.2 7789.5 7767.3 6495.6 7642.8 3740 8530.6 1994.4 FALSE FALSE TRUE 7308.636448 4155.705736 8385.282175 8107.189479 7194.321754 6371.707252 7937.585356 4165.746482 8178.965057 1982.53722 3.68650655 2.096155217 4.229571122 4.089300013 3.628845744 3.213915576 4.003750989 2.101219811 4.125503912 1 10.95313224 -9.34629514 0.663397607 0.650409865 3.469908917 0 1.207121363 0.524816421 0.331587617 0.881524617 0.146391972 4.51E-10 9.34629514 2.819499053 DIIS(ph)IAEDEDLR ddPTM_HeLa_CUDC101_4h_R1 1 DIISIAEDEDLR 12 0 P12956;P12956-2;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 1 0 DIIS(1)IAEDEDLR 84.169 0.029112 1001300 370.72 388.86 259.76 286.1 434.34 334.91 254.79 366.69 358.57 457.99 TRUE FALSE FALSE 327.2647636 400.8403157 273.8034113 297.7683946 402.2996035 328.5221497 264.6173356 408.4325074 343.7895928 455.2658551 0.718843199 0.880453281 0.601414335 0.65405387 0.883658634 0.721605071 0.581236947 0.897129672 0.755140297 1 8.830565451 -9.318687383 0.619517652 1.042101017 0.731185256 0.00763364 0.132477161 0.800518378 0.435287552 0.141592845 0.023174179 4.80E-10 9.318687383 -0.31091576 TAPPALPT(ph)GYDSEEEEESRPMSYDEKR ddPTM_HeLa_CUDC101_4h_R1 1 TAPPALPTGYDSEEEEESRPMSYDEKR 27 2 P25440-2;P25440;A0A0G2JK44;A0A140T9E9;H0Y6K2;P25440-3;P25440-4;A0A0G2JHN8;A0A140T9I1 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 TAPPALPT(0.777)GY(0.16)DS(0.048)EEEEES(0.009)RPMS(0.003)Y(0.003)DEKR 57.768 0.001154 0 982.69 822.81 829.12 850.93 1045 824.2 723.96 979.85 931.92 627.39 TRUE FALSE FALSE 867.5005679 848.1598008 873.9447352 885.6346034 967.9124319 808.4797582 751.8833797 1091.392163 893.5058632 623.6582564 1.390987065 1.359975262 1.401319916 1.420063944 1.551991691 1.296350605 1.205601581 1.74998431 1.432685055 1 9.284611887 -9.318470904 0.456971324 0.882244883 1.43415732 0 0.192724597 1.044780482 0.281634916 0.270616283 0.038175058 4.80E-10 9.318470904 0.551912438 S(ph)PIALPVKQEPPQIDAVK ddPTM_HeLa_CUDC101_4h_R1 2 SPIALPVKQEPPQIDAVK 18 1 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 S(1)PIALPVKQEPPQIDAVK;S(1)PIALPVKQEPPQIDAVK ; 83.251 0.0043841 68165000 3007.6 2520.7 2382.1 2292.16 2898.1 2591.3 2410.7 2570.7 2636.4 2178.3 TRUE FALSE FALSE 2655.053687 2598.359779 2510.883531 2385.644192 2684.312937 2541.87527 2503.681507 2863.338097 2527.726476 2165.343375 1.22615827 1.19997586 1.159577534 1.101739438 1.239670792 1.173890155 1.156251491 1.322348284 1.167355952 1 11.08038011 -9.318284802 0.845465277 0.988900512 1.194796053 0.129744787 0.075657808 0.351998209 0.411688947 0.048719248 0.010509489 4.81E-10 9.318284802 0.205895541 DSEHIDDETRR ddPTM_HeLa_CUDC101_4h_R1 2 DSEHIDDETRR 11 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 ; ; 108.31 0.0051089 33561000 12218.8 8225 8525.8 7517 13505.7 11123.1 10382.5 9370 11043.4 8612 FALSE FALSE TRUE 10786.53079 8478.402501 8986.730537 7823.575751 12509.41142 10910.9454 10782.9565 10436.64293 10588.18638 8560.775441 1.259994595 0.990377865 1.049756602 0.913886342 1.461247466 1.274527696 1.259577077 1.219123548 1.236825618 1 13.06352577 -5.758225036 24.99999905 1.095460412 1.298395123 0.472193894 0.117111122 72.32523834 562510.3804 0.01931175 0.037370183 1.74E-06 5.758225036 0.202934711 LFGAGGGK(ac)AGK ddPTM_HeLa_CUDC101_4h_R1 2 LFGAGGGKAGK 11 1 Q9H444 Q9H444 CHMP4B Charged multivesicular body protein 4b 0 1 ; LFGAGGGK(1)AGK;LFGAGGGK(1)AGK 160.88 0.00014817 10906600 5887.5 6868.4 7678.7 9228.7 10598.2 9935.7 11229.9 12092.3 5471.2 4499.9 FALSE TRUE FALSE 5197.376175 7080.007263 8093.833749 9605.086276 9816.391901 9746.193077 11663.041 13468.83855 5245.67482 4473.134395 1.161909238 1.582784383 1.809432276 2.147283186 2.194522014 2.178828583 2.607353139 3.011051617 1.172706733 1 12.12707039 -5.741750317 0.384223049 0.947921988 3.223125977 0.942022194 0.151354222 0.322989793 0.070824789 0.057824688 0.295475466 1.81E-06 5.741750317 2.27520399 up SVNEILGLAES(ph)SPNEPK ddPTM_HeLa_CUDC101_4h_R1 1 SVNEILGLAESSPNEPK 17 0 Q9H8G2;Q9H8G2-2 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 0 SVNEILGLAES(0.5)S(0.5)PNEPK 113.52 0.00075768 14583000 2881 2540.2 2566.5 2402.5 2833.9 2529.3 2278.4 2676.2 2678.5 2945.1 TRUE FALSE FALSE 2543.293547 2618.460551 2705.252753 2500.484334 2624.848843 2481.057817 2366.278651 2980.84779 2568.091096 2927.582414 0.868735082 0.894410534 0.924056908 0.854112363 0.896592639 0.847476677 0.808270551 1.018194322 0.877205398 1 11.51549407 -9.317823991 0.771563221 1.009823963 0.883660897 0 0.065150269 0.613210726 0.571914544 0.049728133 0.009829 4.81E-10 9.317823991 -0.126163066 ST(ph)SPPPSPEVWADSR ddPTM_HeLa_CUDC101_4h_R1 1 STSPPPSPEVWADSR 15 0 E5RJ61;E5RGQ7;E5RJC0;E5RGQ0;E5RFK4;Q08495-3;Q08495-2;Q08495 E5RJ61 DMTN Dematin 1 0 S(0.025)T(0.879)S(0.095)PPPSPEVWADSR 151.3 0.00094026 9219400 825.01 748.62 782.2 602.57 782.93 932.99 625.08 679.6 932.06 934.25 TRUE FALSE FALSE 728.3035784 771.6840949 824.488098 627.1454091 725.1748137 915.1947702 649.189545 756.962917 893.6400923 928.6930395 0.784224224 0.830935586 0.887793989 0.675298923 0.780855227 0.985465306 0.699035653 0.815084086 0.962255616 1 9.859058012 -9.317537119 0.725433446 1.020308771 0.804682348 0.403463494 0.08399062 0.660289431 0.528696299 0.088591902 0.016549144 4.81E-10 9.317537119 -0.215626424 GEPNVSY(ph)ICSR ddPTM_HeLa_CUDC101_4h_R1 2 GEPNVSYICSR 11 0 P49841;P49841-2;A0A3B3ITW1;A8MT37;P49840 P49841 GSK3B;GSK3A Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha 1 0 GEPNVS(0.067)Y(0.933)ICSR;GEPNVS(0.002)Y(0.998)ICSR ; 184.36 6.48E-10 1115550000 5630.8 4337.1 4427.9 4034.7 4527.4 4314.3 4199.2 4136.6 4362.1 1948.62 TRUE FALSE FALSE 4970.76616 4470.72091 4667.285668 4199.252505 4193.422722 4232.011916 4361.164551 4607.493823 4182.292392 1937.029522 2.566179867 2.30802931 2.40950673 2.167882554 2.164872902 2.184794743 2.251470358 2.378638927 2.15912682 1 10.91963023 -9.316951098 0.937651374 0.964524687 2.308820936 0.168542072 0.370573165 0.124550611 0.187926212 0.117662792 0.028171374 4.82E-10 9.316951098 1.344296249 KPEENPASK(ac)FSSASK ddPTM_HeLa_CUDC101_4h_R1 2 KPEENPASKFSSASK 15 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 1 ; KPEENPASK(1)FSSASK;KPEENPASK(1)FSSASK 161.14 0.00026975 22752000 2304.1 2486.71 3113.07 3329.43 3842.81 3269.67 3368.75 4481.2 1515.47 1614.31 FALSE TRUE FALSE 2034.016891 2563.322588 3281.371981 3465.218546 3559.333562 3207.306492 3498.683816 4991.321694 1453.001685 1604.708012 1.267530837 1.597376325 2.044840529 2.159407518 2.218056827 1.998685411 2.180261947 3.110423614 0.905461725 1 10.6480951 -5.735278735 0.279392574 0.873695187 3.24098088 0.855230585 0.240842349 1.045285693 0.125927813 0.183918736 0.831153712 1.84E-06 5.735278735 2.367285694 up AGTDS(ph)PVSCASVTEER ddPTM_HeLa_CUDC101_4h_R1 4 AGTDSPVSCASVTEER 16 0 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 AGTDS(0.998)PVS(0.001)CASVTEER;AGT(0.004)DS(0.994)PVS(0.003)CASVTEER;AGT(0.003)DS(0.997)PVSCASVTEER;AGT(0.1)DS(0.9)PVSCASVTEER ;;; 315.47 2.40E-144 106704000 10068.5 8843.7 8676.1 8526.4 9357.4 8106.8 6785.57 5006.42 9477.1 5539.7 TRUE FALSE FALSE 8888.285693 9116.163915 9145.15621 8874.143446 8667.123245 7952.176297 7047.291708 5576.330616 9086.449927 5506.749618 1.614071151 1.655452771 1.660717636 1.611502985 1.573909084 1.444078058 1.279755245 1.012635584 1.65005685 1 12.4269853 -9.316833928 1.048110835 1.000848227 1.498866986 0 0.275959688 0.385122126 0.759427638 0.140430427 0.037529639 4.82E-10 9.316833928 0.498018759 LLHEDLDES(ph)DDDMDEK ddPTM_HeLa_CUDC101_4h_R1 5 LLHEDLDESDDDMDEK 16 0 O43150;O43150-2 O43150 ASAP2 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2" 1 0 LLHEDLDES(1)DDDMDEK;LLHEDLDES(1)DDDMDEK;LLHEDLDES(1)DDDMDEK;LLHEDLDES(1)DDDMDEK;LLHEDLDES(1)DDDMDEK ;;;; 225.54 6.35E-33 72857000 21518.8 18973.8 18055.3 17817.7 17902.8 17149.2 17375.1 17098.5 21240.9 27963.4 TRUE FALSE FALSE 18996.39888 19558.36029 19031.42413 18544.38282 16582.14611 16822.10758 18045.26343 19044.92413 20365.34111 27797.07245 0.683395668 0.703612235 0.684655701 0.667134384 0.596542896 0.605175513 0.649178559 0.685141364 0.73264338 1 14.76264533 -9.316351178 0.420206477 1.110252346 0.6340278 0.323647958 0.088255724 0.334431372 0.075434471 0.070685462 0.009914154 4.83E-10 9.316351178 -0.476224546 SK(ac)LNTITPVVGK ddPTM_HeLa_CUDC101_4h_R1 1 SKLNTITPVVGK 12 1 Q9HCK8-2;Q9HCK8;A0A2R8Y840;A0A2R8Y4P3;A0A2R8YFT4;A0A2R8Y808 Q9HCK8-2;A0A2R8Y808 CHD8 Chromodomain-helicase-DNA-binding protein 8 0 1 SK(1)LNTITPVVGK 134.18 0.00040156 911190 508.34 583.87 698.61 701.94 985.98 1102.7 1110.5 1088 457.43 542.86 FALSE TRUE FALSE 448.7531558 601.8583426 736.3789698 730.5681472 913.2462197 1081.667835 1153.332357 1211.853522 438.5745418 539.6310446 0.831592549 1.115314526 1.364597121 1.353828981 1.692353005 2.00445813 2.137260946 2.245707571 0.812730376 1 9.075829538 -5.68870322 0.709420744 0.916993005 2.320443234 0.96947943 0.088924536 0.112542865 0.096644601 0.019930248 0.087265564 2.05E-06 5.68870322 1.40345023 up EGHLS(ph)PDIVAEQK ddPTM_HeLa_CUDC101_4h_R1 2 EGHLSPDIVAEQK 13 0 B4DLR8;H3BNV2;H3BRK3;P15559-3;P15559-2;P15559 B4DLR8 NQO1 NAD(P)H dehydrogenase [quinone] 1 1 0 EGHLS(1)PDIVAEQK;EGHLS(1)PDIVAEQK ; 183.06 7.08E-11 16747100 14159.1 12579.4 12239.2 12404.8 14264 12275.1 12207.3 11647.5 13133.9 14723.5 TRUE FALSE FALSE 12499.39176 12966.9564 12900.88817 12910.72136 13211.77314 12040.97292 12678.13965 12973.40432 12592.51508 14635.92397 0.854021365 0.885967735 0.881453621 0.882125474 0.902694846 0.822699882 0.86623432 0.886408289 0.860384019 1 13.83722621 -9.316045803 0.782831577 1.010252817 0.871074656 0 0.047837835 0.237603032 0.229931252 0.021401878 0.004299518 4.83E-10 9.316045803 -0.139178161 DSFDDRGPSLNPVLDYDHGSR ddPTM_HeLa_CUDC101_4h_R1 3 DSFDDRGPSLNPVLDYDHGSR 21 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 0 0 ;; ;; 114.56 7.06E-06 45688000 10459.3 8378.7 7533.2 7831.5 12788.3 10211.9 9729.2 8606.3 11454 9349.4 FALSE FALSE TRUE 9233.276709 8636.837816 7940.467579 8150.902421 11844.93259 10017.12502 10104.4585 9586.006404 10981.86127 9293.789353 0.993488916 0.929312844 0.854384286 0.877026809 1.274499791 1.077830005 1.087226977 1.031442186 1.181634407 1 13.18205123 -5.779399426 24.99944394 0.97184729 1.112718214 0.32547133 0.102232769 180.5576329 251326.5184 0.012218688 0.022180835 1.66E-06 5.779399426 0.140870925 T(ph)S(ph)SS(ph)ET(ph)EEKK ddPTM_HeLa_CUDC101_4h_R1 1 TSSSETEEKK 10 1 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 4 0 T(0.676)S(0.676)S(0.676)S(0.971)ET(1)EEKK 56.432 0.0031865 0 791.23 676.2 757.07 439.35 825.51 791.92 561.86 619.84 920.01 778.12 TRUE FALSE FALSE 698.4832188 697.0329205 797.9994942 457.268592 764.6137719 776.8154454 583.5311284 690.4000801 882.0867984 773.4917076 0.903026124 0.901151122 1.031684615 0.591174524 0.988522261 1.004297057 0.754411615 0.89257593 1.140395934 1 9.595242015 -9.315760647 0.276542202 1.064123611 0.85881928 0.219989864 0.129856279 7.478287133 0.76505376 0.513984401 0.086296181 4.83E-10 9.315760647 -0.205304332 IVLLDS(ph)SLEYK ddPTM_HeLa_CUDC101_4h_R1 1 IVLLDSSLEYK 11 0 B4DUR8;P49368-2;P49368;Q5SZX6 B4DUR8 CCT3 T-complex protein 1 subunit gamma 1 0 IVLLDS(0.697)S(0.303)LEY(0.001)K 117.86 0.0047359 7607200 3476.1 3101.1 2806.5 2921.9 3773.2 3219.3 3048.4 2785.7 3731.9 3556.1 TRUE FALSE FALSE 3068.636827 3196.641215 2958.227879 3041.067712 3494.858553 3157.897216 3165.977809 3102.812828 3578.069502 3534.948159 0.868085383 0.904296491 0.836851842 0.860286368 0.988659068 0.893336217 0.895622133 0.877753418 1.012198579 1 11.78747334 -9.315572693 0.960146611 1.002221462 0.890435302 0.5874169 0.038394754 0.369005491 0.590100116 0.029244799 0.007182563 4.84E-10 9.315572693 -0.11178616 STLESEKPGS(ph)PEAAET(ph)SPPSNIIDHCEK ddPTM_HeLa_CUDC101_4h_R1 3 STLESEKPGSPEAAETSPPSNIIDHCEK 28 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 2 0 S(0.011)T(0.028)LES(0.062)EKPGS(0.881)PEAAET(0.5)S(0.5)PPS(0.017)NIIDHCEK;S(0.279)T(0.279)LES(0.18)EKPGS(0.476)PEAAET(0.392)S(0.392)PPS(0.003)NIIDHCEK;S(0.012)T(0.015)LES(0.181)EKPGS(0.788)PEAAET(0.914)S(0.086)PPS(0.003)NIIDHCEK ;; 76.152 2.22E-05 296325000 9525.7 7525.7 6877.4 7103.7 8689.1 8186.9 7787 7881.5 7975.2 3873.22 TRUE FALSE FALSE 8409.111886 7757.557897 7249.213047 7393.419591 8048.122404 8030.748523 8087.347198 8778.698102 7646.45888 3850.181915 2.184081706 2.0148549 1.882823515 1.92027799 2.090322634 2.085810151 2.100510411 2.28007359 1.985999376 1 11.9107109 -9.315367796 0.724517219 0.88790021 2.075491161 0.08025492 0.323484249 0.186448416 0.14900483 0.137608197 0.025755399 4.84E-10 9.315367796 1.187590951 SDTDTGVCS(ph)GTDEDPDDKNAPFR ddPTM_HeLa_CUDC101_4h_R1 2 SDTDTGVCSGTDEDPDDKNAPFR 23 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83;Q5JSH3-3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 SDTDT(0.001)GVCS(0.947)GT(0.052)DEDPDDKNAPFR;S(0.001)DT(0.001)DT(0.004)GVCS(0.955)GT(0.038)DEDPDDKNAPFR ; 91.64 0.00011642 39212000 4526.6 3469.4 4499.8 3435.3 4218.8 3441.4 2840.2 2969.5 3887.4 2328 TRUE FALSE FALSE 3995.99881 3576.288102 4743.072799 3575.406383 3907.587529 3375.761029 2949.747465 3307.535877 3727.159727 2314.152952 1.72676521 1.545398327 2.049593478 1.545017316 1.688560613 1.458745856 1.27465536 1.42926416 1.61059351 1 11.17626851 -9.315011947 0.997225042 0.993884031 1.597898438 0 0.269911543 0.344776618 0.604218182 0.149725747 0.03820638 4.84E-10 9.315011947 0.604014407 ESPRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGR ddPTM_HeLa_CUDC101_4h_R1 5 ESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 40 1 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 0 ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR ;;;; 150.08 3.34E-32 1083329000 3196.04 2887.39 2723.13 2954.05 2730.96 2850.21 2983.31 3042.23 3432.43 3504.39 TRUE FALSE FALSE 2821.405036 2976.347063 2870.350645 3074.528927 2529.502522 2795.846993 3098.377266 3388.545166 3290.943783 3483.545732 0.809923352 0.854401605 0.823973866 0.882586067 0.726128696 0.802586562 0.889432063 0.972728773 0.944710946 1 11.76634079 -9.314995512 0.918660748 1.005130178 0.840163663 0.379275588 0.063412356 0.434735767 0.624558094 0.049941563 0.011749337 4.84E-10 9.314995512 -0.164966515 LLDQCDLSTS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 LLDQCDLSTSR 11 0 Q9Y597;Q9Y597-2 Q9Y597 KCTD3 BTB/POZ domain-containing protein KCTD3 1 0 LLDQCDLS(0.012)T(0.234)S(0.754)R 92.906 0.020851 7332800 5040.4 4240.5 3611 4765.4 5165.4 4443.3 4066.1 4659.8 4565.2 1345 TRUE FALSE FALSE 4449.571953 4371.144779 3806.221583 4959.75361 4784.358733 4358.551456 4222.930839 5190.252796 4377.020524 1336.99988 3.328027189 3.269368116 2.846837639 3.709614102 3.578428692 3.259949025 3.158512504 3.882014407 3.273762839 1 10.38478362 -9.314844028 0.507461975 0.434155115 3.457200019 0.009179862 0.759160906 0.312483062 0.106608455 0.474460055 0.069423745 4.84E-10 9.314844028 3.023044904 DSGPPTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DSGPPTKK 8 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 1 ; DSGPPTK(1)K;DSGPPTK(1)K 124.23 0.0017957 125101000 5403.4 4497.9 12429.9 16931.6 12617 12696.2 15428.4 8906.2 3497.9 4619.1 FALSE TRUE FALSE 4770.021643 4636.474968 13101.89799 17622.14383 11686.26905 12454.04114 16023.47856 9920.045808 3353.715081 4591.625388 1.038852528 1.009767691 2.853433563 3.837887969 2.545126847 2.712338243 3.489718172 2.16046497 0.730398236 1 12.16478923 -6.750691325 6.402096405 1.016039267 2.978570756 0.824364917 0.449073257 0.041516799 6.797487771 0.064694347 0.08935379 1.78E-07 6.750691325 1.962531489 TIAATPIQTLPQSQST(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 TIAATPIQTLPQSQSTPK 18 0 A0A0C4DG88;P14859-4;P14859-5;P14859-3;P14859;P14859-2;P14859-6 A0A0C4DG88 POU2F1 "POU domain protein;POU domain, class 2, transcription factor 1" 1 0 TIAATPIQTLPQSQS(0.204)T(0.796)PK;TIAATPIQTLPQSQS(0.193)T(0.807)PK ; 171.78 1.24E-06 44799000 4732.2 4193.7 4442.5 4065.5 4786.7 4665.1 4247.5 3236.7 4644.6 5471.1 TRUE FALSE FALSE 4177.49869 4322.902926 4682.674988 4231.308663 4433.594677 4576.12099 4411.327498 3605.152845 4453.147622 5438.557654 0.768126212 0.794862021 0.86101413 0.778020374 0.815215165 0.841421804 0.811120848 0.662887676 0.81881041 1 12.40900837 -9.314376311 0.771432805 1.017289449 0.793839764 0.117670299 0.07525044 0.350908073 0.327745082 0.050345907 0.009998644 4.85E-10 9.314376311 -0.223449686 RAS(ph)YDYNQDR ddPTM_HeLa_CUDC101_4h_R1 1 RASYDYNQDR 10 1 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 1 0 RAS(1)YDYNQDR 75.89 0.02812 9005800 1922.5 1671.8 1675.5 1898.2 1983.6 1656.1 1696.8 1936.6 2131.1 2336.5 TRUE FALSE FALSE 1697.147464 1723.306176 1766.082598 1975.616801 1837.27378 1624.512652 1762.246144 2157.054716 2043.255156 2322.602394 0.730709427 0.7419721 0.760389554 0.850604824 0.791041026 0.699436398 0.758737763 0.928723195 0.879726621 1 11.18152649 -9.314329359 0.975754089 1.003550263 0.77693419 0.397800698 0.071596543 0.28621122 0.476126923 0.046244577 0.01156069 4.85E-10 9.314329359 -0.226616073 SVSDPVEDKKEQES(ph)DEEEEEEEEDEPSGATTR ddPTM_HeLa_CUDC101_4h_R1 1 SVSDPVEDKKEQESDEEEEEEEEDEPSGATTR 32 2 Q8NFC6;H0Y9Y2 Q8NFC6;H0Y9Y2 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 S(0.002)VS(0.014)DPVEDKKEQES(0.984)DEEEEEEEEDEPSGATTR 63.768 0.00023793 48991000 2622.3 2015.9 2625 2086.5 2301.7 1859.2 2003.7 1982.5 2305.1 1667.1 TRUE FALSE FALSE 2314.917969 2078.00749 2766.91544 2171.596489 2131.908177 1823.738858 2080.98338 2208.179786 2210.082802 1657.184015 1.396898563 1.253938893 1.669648883 1.310413611 1.286464362 1.100504736 1.255734645 1.33248919 1.333637533 1 10.69451809 -9.314169898 0.989726776 0.996103338 1.327209473 0 0.169731805 0.431617897 0.743067401 0.102428869 0.025974127 4.85E-10 9.314169898 0.331106135 GADAGSSGGTGPTEGYS(ph)PPAASTR ddPTM_HeLa_CUDC101_4h_R1 3 GADAGSSGGTGPTEGYSPPAASTR 24 0 J3KT76;J3KSI9;Q969W3;Q969W3-2 J3KT76 FAM104A Protein FAM104A 1 0 GADAGSSGGT(0.004)GPT(0.012)EGYS(0.983)PPAASTR;GADAGSSGGTGPT(0.031)EGY(0.001)S(0.968)PPAAS(0.001)TR;GADAGSSGGTGPT(0.026)EGYS(0.973)PPAASTR ;; 172.81 3.77E-11 43337000 5053.9 4454.5 4550.03 4438.54 4823.04 4323.67 4517.74 4014.05 4785 5844.1 TRUE FALSE FALSE 4461.489503 4591.737865 4796.018385 4619.562846 4467.253948 4241.203198 4691.990745 4470.993227 4587.760275 5809.339033 0.767985734 0.790406247 0.825570406 0.795195946 0.768978006 0.730066394 0.80766344 0.769621673 0.789721558 1 12.50415831 -9.313561535 0.635920495 1.032771183 0.778288591 0 0.069801526 0.236216575 0.137245065 0.034695553 0.005833039 4.86E-10 9.313561535 -0.254482592 RNSLILKPKPDPAQQT(ph)DSQNSDTEQYFR ddPTM_HeLa_CUDC101_4h_R1 1 RNSLILKPKPDPAQQTDSQNSDTEQYFR 28 3 Q9NXD2 Q9NXD2 MTMR10 Myotubularin-related protein 10 1 0 RNS(0.066)LILKPKPDPAQQT(0.847)DS(0.082)QNS(0.004)DT(0.001)EQYFR 51.811 0.011323 24764000 670.08 502.34 598.68 438.54 538.15 564.45 630.82 494.59 517.72 347.32 TRUE FALSE FALSE 591.5342382 517.8165 631.0464517 456.4255567 498.4517466 553.6840567 655.1509387 550.8921264 496.3793625 345.2541252 1.713329965 1.499812637 1.827773821 1.321998851 1.443724232 1.603700047 1.897590473 1.595613452 1.437721742 1 8.431514842 -9.313436985 0.833434897 0.963095518 1.618101762 0.27536537 0.209899976 0.344747165 0.390116437 0.150541482 0.03224513 4.86E-10 9.313436985 0.655006244 DSGSDLSHRPK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 DSGSDLSHRPKR 12 2 O95251-4;O95251;E7EUP3;D6RFZ5 O95251-4 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase 0 1 ; DSGSDLSHRPK(1)R;DSGSDLSHRPK(1)R 79.201 0.014668 736490 467.56 240.52 247.474 112.78 899.6 688.57 673.05 917.04 115.27 127.87 FALSE TRUE FALSE 412.7533256 247.9301361 260.853193 117.3796559 833.2383003 675.4366745 699.009764 1021.432127 110.5185218 127.1094236 3.247228365 1.950525218 2.052193974 0.923453609 6.555283448 5.313820609 5.499275698 8.035848942 0.869475439 1 6.989927182 -1.000000001 0.277820061 1.558246566 50.40885679 0.73649554 1.273473812 20.03491392 0.255092174 0.589451674 480.1882227 0.1 1.000000001 48.85061022 RFS(ph)QGPTPAAAVPEGTAAEGAPR ddPTM_HeLa_CUDC101_4h_R1 1 RFSQGPTPAAAVPEGTAAEGAPR 23 1 Q96G46-2;Q96G46 Q96G46-2 DUS3L tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 1 0 RFS(0.954)QGPT(0.046)PAAAVPEGTAAEGAPR 93.196 0.00021677 0 923.56 899.24 664.45 884.74 1006.7 758.05 805.5 698.86 1127.5 1179.6 TRUE FALSE FALSE 815.3016968 926.9445185 700.3721769 920.8235214 932.4377466 743.5914592 836.5684048 778.4153975 1081.023973 1172.583687 0.695303633 0.790514595 0.597289716 0.785294501 0.795199317 0.63414788 0.713440255 0.663846347 0.921916265 1 10.19547518 -9.312857471 0.610665805 1.047699474 0.704442608 0.684368825 0.067543152 0.43722308 0.230438493 0.084554792 0.013804069 4.87E-10 9.312857471 -0.343256866 EDLPAENGETKTEES(ph)PASDEAGEK ddPTM_HeLa_CUDC101_4h_R1 1 EDLPAENGETKTEESPASDEAGEK 24 1 P05114;A6NEL0;A6NL93 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 EDLPAENGET(0.011)KT(0.011)EES(0.927)PAS(0.052)DEAGEK 56.461 0.0053031 19045000 1659.9 1711.3 1482.1 1565.5 1493.5 1753.9 1594.1 1623.6 1579.8 2519.8 TRUE FALSE FALSE 1465.329038 1764.023125 1562.226809 1629.347857 1383.32748 1720.44728 1655.584971 1808.424061 1514.679975 2504.812118 0.585005569 0.704253669 0.623690215 0.650487055 0.552267961 0.686856818 0.660961738 0.721979924 0.60470802 1 11.29048668 -9.312065339 0.856181194 1.018290876 0.643314937 0 0.130897127 0.176402675 0.213480778 0.044628716 0.009833948 4.87E-10 9.312065339 -0.37497594 LENEGS(ph)DEDIETDVLYSPQMALK ddPTM_HeLa_CUDC101_4h_R1 1 LENEGSDEDIETDVLYSPQMALK 23 0 O60502-3;O60502 O60502-3 MGEA5 Protein O-GlcNAcase 1 0 LENEGS(1)DEDIETDVLYSPQMALK 158.72 2.57E-13 0 1999 1460.6 1981.9 1657.7 1658 1590.5 1744.4 1524.5 1528.8 1417.8 TRUE FALSE FALSE 1764.68025 1505.599355 2089.047509 1725.308171 1535.692643 1560.163862 1811.682092 1698.042918 1465.782217 1409.366863 1.252108516 1.068280655 1.482259562 1.224172511 1.089633 1.106996272 1.285458131 1.204826765 1.040028864 1 10.46083148 -9.311704839 0.855930866 0.98903301 1.216233775 0.31783817 0.113247315 0.634745659 0.767743547 0.097275628 0.021439567 4.88E-10 9.311704839 0.227200765 CTGDFSPS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 2 CTGDFSPSPEK 11 0 A0A2R8YH03;Q5VWN6;Q5VWN6-2 A0A2R8YH03 FAM208B Protein FAM208B 1 0 CTGDFS(0.027)PS(0.973)PEK;CTGDFS(0.001)PS(0.999)PEK ; 182.71 1.31E-10 65027000 9524.9 8259.2 7626.7 7660.4 7915.2 7466.1 7459.1 7971 8078.7 6150.3 TRUE FALSE FALSE 8408.405661 8513.656162 8039.022472 7972.824223 7331.311465 7323.696582 7746.799986 8878.38642 7745.692567 6113.717742 1.375334292 1.392549758 1.314915541 1.304087719 1.199157661 1.19791212 1.267117704 1.452207445 1.266936567 1 12.57783423 -9.311532453 0.997646542 0.997043894 1.309702926 0.155419494 0.110714125 0.264841629 0.465230866 0.059455296 0.015251615 4.88E-10 9.311532453 0.312659031 DSGYIDCWDSER ddPTM_HeLa_CUDC101_4h_R1 1 DSGYIDCWDSER 12 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 0 0 172.21 4.24E-06 13173000 2178.8 2059.8 1501 1752.7 2308.9 1592.6 1712.2 1968.4 2415.4 1657.1 FALSE FALSE TRUE 1923.404367 2123.259997 1582.1486 1824.182682 2138.577047 1562.223808 1778.240128 2192.474699 2315.83619 1647.243496 1.167650303 1.288977618 0.96048253 1.107415319 1.298276213 0.948386691 1.079524753 1.330996119 1.40588577 1 10.68583811 -9.270841366 1.005239955 1.000146798 1.141691949 0 0.178033583 0.808908281 1.468599145 0.080997065 0.022125559 5.36E-10 9.270841366 0.141545151 EYCLS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 EYCLSPR 7 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 EYCLS(1)PR 104.06 0.017209 15079000 3420.2 3201.6 2708 2937.4 2792.4 2909.3 2349.4 1803.5 3183.8 1812.1 TRUE FALSE FALSE 3019.289341 3300.237501 2854.402671 3057.199869 2586.410215 2853.80995 2440.017145 2008.80315 3052.562416 1801.321549 1.676152347 1.832120147 1.584615847 1.697198299 1.435840379 1.584286799 1.354570563 1.11518299 1.694623827 1 10.81484002 -9.31120659 1.054921979 1.002456606 1.550525904 0 0.283857106 0.334215225 0.670530776 0.134060974 0.036332523 4.88E-10 9.31120659 0.548069298 SPAPEQFQS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SPAPEQFQSR 10 0 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 SPAPEQFQS(1)R 115.24 0.00085312 0 807.03 714.38 655.03 585.12 733.73 729.09 822.42 572.09 710.57 575.45 TRUE FALSE FALSE 712.4311668 736.3892011 690.4429032 608.9837227 679.6041997 715.183823 854.1410149 637.2144131 681.2800038 572.0271978 1.245449813 1.287332497 1.207010621 1.064606237 1.18806274 1.250261921 1.493182524 1.113958245 1.190992328 1 9.159939933 -9.311014898 0.619524566 0.962181197 1.23917211 0.071021731 0.12343693 0.945653482 0.516564159 0.14879618 0.024611393 4.89E-10 9.311014898 0.276990913 TPETVVPTAPELQISTSTDQPVT(ph)PKPTSR ddPTM_HeLa_CUDC101_4h_R1 2 TPETVVPTAPELQISTSTDQPVTPKPTSR 29 1 Q14676;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 TPETVVPTAPELQIS(0.002)T(0.002)S(0.002)T(0.002)DQPVT(0.629)PKPT(0.183)S(0.183)R;TPETVVPT(0.008)APELQIS(0.039)T(0.039)S(0.039)T(0.106)DQPVT(0.463)PKPT(0.086)S(0.222)R ; 78.485 2.00E-05 16321100 1627.49 1423.24 1602.87 1782.81 1564.13 1887.29 1468.21 751.76 1517.83 2205 TRUE FALSE FALSE 1436.718089 1467.088337 1689.526001 1855.520698 1448.747246 1851.293088 1524.839352 837.3373197 1455.264405 2191.884562 0.655471604 0.669327374 0.770809754 0.84654125 0.660959647 0.844612495 0.695675027 0.382017071 0.66393296 1 11.0979561 -9.310890014 0.816217311 1.019816874 0.698515085 0 0.161255555 0.535808152 0.576557279 0.113547115 0.023919354 4.89E-10 9.310890014 -0.321301789 KNSTDLDSAPEDPT(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 2 KNSTDLDSAPEDPTSPK 17 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L373;I3L135;I3L1Q4 I3L2J0 CIC Protein capicua homolog 1 0 KNSTDLDSAPEDPT(0.65)S(0.35)PK;KNSTDLDSAPEDPT(0.874)S(0.126)PK ; 141.64 0.0018828 34723000 14332 12335.5 10898 9744.8 8978.4 7692.7 5724.2 5122.3 13376.3 13579.2 TRUE FALSE FALSE 12652.02469 12715.54213 11487.17884 10142.23506 8316.081319 7545.974564 5944.984311 5705.401927 12824.92325 13498.43031 0.937295996 0.942001539 0.851001085 0.751364035 0.616077657 0.559026078 0.440420417 0.42267151 0.950104787 1 13.72050403 -5.683533705 0.665276294 0.98056043 0.373651205 0.990327947 0.020675926 0.06016741 0.044296783 0.004264447 0.019653203 2.07E-06 5.683533705 -0.606909224 down DTSQSDKDLDDALDKLS(ph)DSLGQR ddPTM_HeLa_CUDC101_4h_R1 2 DTSQSDKDLDDALDKLSDSLGQR 23 2 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;P20810-2;E9PCH5;P20810-3;H0Y7F0;E7EQ12;E7EQA0;A0A0C4DGD1 P20810-6 CAST Calpastatin 1 0 DT(0.001)S(0.001)QSDKDLDDALDKLS(0.909)DS(0.089)LGQR;DTSQSDKDLDDALDKLS(0.946)DS(0.054)LGQR ; 65.151 0.0045431 24661000 2231 1888.63 2021.14 1981.61 2046.52 1645.84 1921.25 1976.68 2322.46 2559.4 TRUE FALSE FALSE 1969.485562 1946.816452 2130.408942 2062.428621 1895.552297 1614.448344 1995.353256 2201.697261 2226.727216 2544.176575 0.774115123 0.765204928 0.837366778 0.810646809 0.745055322 0.634566154 0.784282536 0.865386972 0.875225107 1 11.31298309 -9.310706947 0.53330024 1.049131427 0.766597775 0.406730405 0.070220925 0.700639806 0.26853347 0.10256456 0.015438413 4.89E-10 9.310706947 -0.282533652 LADAMAES(ph)PSRDVVGSGTELQR ddPTM_HeLa_CUDC101_4h_R1 1 LADAMAESPSRDVVGSGTELQR 22 1 K7ESE9;Q9H6U6-6;Q9H6U6-2;Q9H6U6 K7ESE9 BCAS3 Breast carcinoma-amplified sequence 3 1 0 LADAMAES(0.874)PS(0.125)RDVVGS(0.001)GTELQR 81.788 0.0004984 17211000 824.81 721.39 849.92 701.31 791.67 831.66 824.19 727.62 801.13 1102.2 TRUE FALSE FALSE 728.1270221 743.6151708 895.8692461 729.9124531 733.2700813 815.7974711 855.9792844 810.4493197 768.1070823 1095.644065 0.664565296 0.678701409 0.81766449 0.666194868 0.669259392 0.744582567 0.781256716 0.739701282 0.701055303 1 10.09756348 -9.310642032 0.933056537 1.007596998 0.718218861 0 0.103732288 0.204866973 0.306272007 0.041476751 0.009970829 4.89E-10 9.310642032 -0.289378137 SFSQPEAGGS(ph)HHK ddPTM_HeLa_CUDC101_4h_R1 2 SFSQPEAGGSHHK 13 0 B7WPG3;V9GYK2;Q8WVV9-2;Q8WVV9-5;Q8WVV9;C9IYN3;Q8WVV9-3;Q8WVV9-4 B7WPG3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 1 0 SFSQPEAGGS(1)HHK;SFSQPEAGGS(1)HHK ; 87.668 0.013492 19646900 6636.4 4481 6333.3 5719.4 7049.8 7016.7 5914.6 6151 7290.4 7471.8 TRUE FALSE FALSE 5858.491252 4619.054299 6675.697355 5952.661853 6529.750299 6882.868138 6142.728103 6851.204977 6989.886626 7427.357401 0.78877196 0.621897406 0.898798455 0.801450843 0.879148524 0.926691388 0.827040867 0.922428342 0.941100078 1 12.85863329 -9.310285562 1.115239272 0.996998085 0.829932098 0.282501001 0.085828456 0.430216831 0.983311916 0.053503053 0.015310765 4.89E-10 9.310285562 -0.167065987 LASVPAGGAVAVSAAPGS(ph)AAPAAGSAPAAAEEK ddPTM_HeLa_CUDC101_4h_R1 1 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK 33 0 P05387;H0YDD8 P05387 RPLP2 60S acidic ribosomal protein P2 1 0 LASVPAGGAVAVSAAPGS(0.971)AAPAAGS(0.029)APAAAEEK 160.98 8.83E-24 11466000 2388.4 2199.9 2114.9 1863.7 2460.6 2229 2191 1892.6 2122.7 2654.6 TRUE FALSE FALSE 2108.435373 2267.676311 2229.237891 1939.709742 2279.08644 2186.485539 2275.507604 2108.045934 2035.201408 2638.810321 0.799009825 0.859355556 0.844788984 0.735069787 0.863679523 0.828587611 0.862323292 0.798862244 0.77125718 1 11.36567194 -9.309933726 0.797042953 1.012726593 0.823214131 0 0.079927815 0.284607412 0.288896719 0.03515603 0.00724794 4.90E-10 9.309933726 -0.189512461 EVVKPVPITS(ph)PAVSK ddPTM_HeLa_CUDC101_4h_R1 2 EVVKPVPITSPAVSK 15 1 Q96HC4;A0A0D9SFR4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 EVVKPVPIT(0.091)S(0.909)PAVSK;EVVKPVPIT(0.211)S(0.786)PAVS(0.003)K ; 152.86 9.09E-05 1495090000 15950 12994.3 14013.7 13583.5 15375.8 13326.3 13797.2 11648.9 13491.6 13048.6 TRUE FALSE FALSE 14080.36518 13394.63898 14771.32301 14137.49384 14241.55787 13072.12303 14329.36263 12974.96369 12935.47054 12970.98635 1.085527716 1.032661559 1.138797206 1.089932058 1.097954888 1.007797147 1.104724209 1.000306634 0.997261904 1 13.66300057 -9.30974066 0.89853861 0.997358253 1.072433938 0.310993575 0.04197079 0.618585876 0.843830129 0.031978027 0.007414889 4.90E-10 9.30974066 0.075075685 SVTSS(ph)PVEKK ddPTM_HeLa_CUDC101_4h_R1 1 SVTSSPVEKK 10 1 G8JLP4;Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3;F8VVB8 G8JLP4 KIAA0430 Meiosis arrest female protein 1 1 0 SVTS(0.075)S(0.925)PVEKK 64.945 0.040255 19963000 4046.4 3022.5 4060.6 4616.3 4339.2 3711 4211.4 2973.1 5418.6 5489 TRUE FALSE FALSE 3572.087126 3115.619642 4280.128319 4804.572667 4019.105861 3640.218858 4373.835109 3311.545686 5195.243015 5456.351184 0.654665912 0.571007902 0.784430506 0.880546817 0.736592225 0.667152596 0.801604398 0.606915789 0.952146011 1 12.41372079 -9.309041956 1.009263479 1.001753703 0.715282321 0.576275236 0.08984238 0.314639397 0.568766141 0.064917511 0.016901484 4.91E-10 9.309041956 -0.286471383 SEPRPPISS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SEPRPPISSPR 11 1 Q6WKZ4;E7EX40;Q6WKZ4-2;Q6WKZ4-3 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 0 SEPRPPIS(0.034)S(0.966)PR 104.07 0.0055444 16652000 4073.2 3315.4 3260.8 3779.9 3320.7 3690.9 2995.3 2954.6 3342.7 2670.7 TRUE FALSE FALSE 3595.745671 3417.543544 3437.088711 3934.06066 3075.738577 3620.502232 3110.829724 3290.939721 3204.912491 2654.814558 1.354424421 1.287300288 1.294662447 1.48185893 1.158551194 1.363749578 1.171769122 1.239611901 1.207207668 1 11.37439538 -9.309026951 0.939461774 0.992701995 1.297235257 0.255739451 0.108974538 0.313357842 0.476647284 0.066904397 0.016229849 4.91E-10 9.309026951 0.304533261 SSLALCLDS(ph)DSEDELKR ddPTM_HeLa_CUDC101_4h_R1 2 SSLALCLDSDSEDELKR 17 1 Q86T82-2;Q86T82 Q86T82-2 USP37 Ubiquitin carboxyl-terminal hydrolase 37 1 0 SSLALCLDS(0.966)DS(0.034)EDELKR;SSLALCLDS(0.941)DS(0.059)EDELKR ; 90.718 0.0035457 26221000 2553.4 2175.29 2207.59 2025.65 2720.67 1598.34 1694.38 1045.11 1858.01 964.76 TRUE FALSE FALSE 2254.094323 2242.308107 2326.938993 2108.264763 2519.971594 1567.854328 1759.732804 1164.081098 1781.422041 959.0215646 2.350410466 2.338120632 2.426367747 2.198349693 2.62764852 1.634847834 1.834925167 1.213821608 1.857541172 1 9.905419446 -9.308722709 1.017377408 0.995739001 2.110222839 0.144041861 0.473951925 0.359414451 0.662309082 0.289266359 0.075937671 4.91E-10 9.308722709 1.114483838 AHLDHIPDYTPPLLTTISPEQES(ph)DER ddPTM_HeLa_CUDC101_4h_R1 1 AHLDHIPDYTPPLLTTISPEQESDER 26 0 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;K7EM61 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 AHLDHIPDYTPPLLT(0.081)T(0.057)IS(0.214)PEQES(0.647)DER 100.68 2.21E-06 7868600 950.57 827.38 621.7 693.04 834.38 838.17 783.95 854.2 947.86 495.02 TRUE FALSE FALSE 839.1456256 852.8705971 655.3109825 721.3051668 772.8294497 822.1833037 814.1872141 951.4386752 908.7888096 492.075599 1.705318506 1.733210504 1.331728263 1.465842176 1.570550239 1.670847539 1.654597821 1.933521347 1.846847947 1 8.942736168 -9.308698424 0.776164758 0.949240321 1.628597239 0 0.30332063 0.364514845 0.346697304 0.1592335 0.03206501 4.91E-10 9.308698424 0.679356917 LVT(ph)GT(ph)VLAVFGSVRDDGK ddPTM_HeLa_CUDC101_4h_R1 1 LVTGTVLAVFGSVRDDGK 18 1 C9JLE1;F8W8R3;A0A087WWF6;P49005 C9JLE1 POLD2 DNA polymerase delta subunit 2 2 0 LVT(1)GT(1)VLAVFGSVRDDGK 75.819 0.0020074 0 844.72 715.79 769.13 690.7 840.35 834.96 661.07 628.88 683.42 953.46 TRUE FALSE FALSE 745.7032021 737.8426415 810.7114943 718.8697315 778.3590547 819.0345291 686.5676913 700.4691572 655.2491383 947.7887775 0.786782055 0.778488477 0.855371485 0.758470398 0.821236834 0.864153014 0.724388923 0.739056184 0.691345112 1 9.888421768 -9.308696582 0.583992423 1.037655406 0.787712077 0 0.105944962 0.473126641 0.224659068 0.064803433 0.01031581 4.91E-10 9.308696582 -0.249943329 GPGCYFS(ph)DGY(ph)GLAY(ph)DLSKIPT(ph)S(ph)IK ddPTM_HeLa_CUDC101_4h_R1 1 GPGCYFSDGYGLAYDLSKIPTSIK 24 1 Q8TCI5-2;Q8TCI5 Q8TCI5-2 PIFO Protein pitchfork 5 0 GPGCY(0.189)FS(0.933)DGY(0.935)GLAY(0.935)DLS(0.371)KIPT(0.818)S(0.818)IK 41.257 0.002939 0 267.34 658.65 683.57 914.94 1991.6 1558.4 1330.3 791.38 1395.7 5001.6 TRUE FALSE FALSE 236.0028105 678.9422258 720.5258619 952.2552079 1844.683636 1528.676116 1381.610117 881.4675003 1338.168655 4971.850261 0.047467803 0.136557255 0.14492107 0.191529342 0.371025582 0.307466242 0.27788651 0.177291643 0.269149026 1 12.27956713 -9.308130819 0.956621384 1.015614929 0.20417563 0.110814606 0.238052118 0.14497619 0.230496583 0.083033578 0.020532579 4.92E-10 9.308130819 -0.811439299 RS(ph)PS(ph)PAPPPR ddPTM_HeLa_CUDC101_4h_R1 2 RSPSPAPPPR 10 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RS(1)PS(1)PAPPPR;RS(1)PS(1)PAPPPR ; 92.151 0.013342 30602000 2418.1 2229.32 2209.4 2249.8 2440.6 2340.6 1785.18 2281.7 2436.4 3047.4 TRUE FALSE FALSE 2134.653984 2298.002707 2328.846847 2341.556568 2260.5618 2295.956955 1854.034991 2541.439505 2335.970561 3029.273929 0.704675125 0.758598516 0.76878054 0.772976173 0.746238819 0.757923188 0.612039398 0.83895995 0.771132164 1 11.56475633 -9.308002472 0.799806401 1.018399792 0.739905249 0.09573843 0.089016242 0.274201485 0.281009332 0.049828911 0.010335541 4.92E-10 9.308002472 -0.278494543 S(ph)PTDDEVTPSAVVR ddPTM_HeLa_CUDC101_4h_R1 2 SPTDDEVTPSAVVR 14 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(0.998)PT(0.002)DDEVTPSAVVR;S(0.995)PT(0.005)DDEVTPSAVVR ; 155.09 9.42E-05 12459200 1462.03 1514.6 1179 1071.46 857.84 1017.01 1043.83 1205.13 1170.66 678.44 TRUE FALSE FALSE 1290.65306 1561.263031 1242.740306 1115.15877 794.5588523 997.6122287 1084.090873 1342.317128 1122.404899 674.4046087 1.913766666 2.315024261 1.842722144 1.653545595 1.178163438 1.47924883 1.607478447 1.990373599 1.664290079 1 9.397470585 -9.307985181 1.079705541 1.007890204 1.741824376 0.075968509 0.351755614 0.385204111 0.817054981 0.208152415 0.057940106 4.92E-10 9.307985181 0.733934172 DSLIIIDELGR ddPTM_HeLa_CUDC101_4h_R1 1 DSLIIIDELGR 11 0 A0A2R8Y713;A0A2R8YFH0;E9PHA6;A0A2R8Y6P0;A0A2R8YG02;P43246-2;P43246 A0A2R8Y713 MSH2 DNA mismatch repair protein Msh2 0 0 116.23 0.028815 1369900 765.36 825.77 724.61 590.05 872.68 966.87 608.82 624.01 943.16 1168.7 FALSE FALSE TRUE 675.645661 851.2109949 763.7846084 614.1147894 808.304135 948.4285657 632.3023913 695.0447761 904.2825456 1161.74852 0.581576519 0.732698153 0.657444012 0.5286125 0.695765151 0.816380266 0.544267869 0.598274725 0.77838063 1 10.18208209 -9.3361199 0.837341789 1.022962345 0.642553888 0.397438765 0.107038058 0.309438043 0.350195383 0.079237901 0.016501614 4.61E-10 9.3361199 -0.380408456 GPPS(ph)PPAPVMHSPSR ddPTM_HeLa_CUDC101_4h_R1 2 GPPSPPAPVMHSPSR 15 0 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 1 0 GPPS(1)PPAPVMHSPSR;GPPS(1)PPAPVMHSPSR ; 127.53 0.00047746 146651000 2595.4 2314.65 2256.11 2039.46 2467.3 2401.1 2075.43 2788.1 2548.3 2735.1 TRUE FALSE FALSE 2291.171146 2385.961623 2378.082131 2122.637994 2285.292195 2355.303018 2155.48003 3105.486034 2443.257995 2718.831504 0.842704354 0.877568772 0.874670655 0.780717007 0.840542046 0.866292381 0.792796474 1.142213495 0.898642668 1 11.40877103 -9.307764521 0.937420326 1.003266095 0.867966177 0.033890582 0.099650704 0.713469336 1.080118657 0.067586619 0.016389126 4.92E-10 9.307764521 -0.135299919 RLS(ph)EDYGVLK ddPTM_HeLa_CUDC101_4h_R1 1 RLSEDYGVLK 10 1 P32119;A6NIW5 P32119 PRDX2 Peroxiredoxin-2 1 0 RLS(1)EDYGVLK 75.483 0.028578 7525300 4686.9 4362.9 3936 4348.2 6837.2 4546.6 3748 3044.4 5935 6245.7 TRUE FALSE FALSE 4137.508687 4497.315778 4148.792066 4525.538391 6332.833378 4459.88118 3892.561615 3390.96219 5690.356788 6208.550299 0.666421063 0.724374542 0.668238456 0.728920307 1.020018051 0.718345019 0.626967879 0.546176165 0.916535506 1 12.60004072 -9.307655284 0.89818852 1.010424102 0.716297546 0.401343912 0.118421646 0.490194553 0.668683582 0.099185576 0.023057739 4.92E-10 9.307655284 -0.294126556 LS(ph)GDQPAAR ddPTM_HeLa_CUDC101_4h_R1 1 LSGDQPAAR 9 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LS(1)GDQPAAR 106.16 0.01213 22073000 2557.8 2287 2747.3 2738.1 2437.7 2534 2382.8 1745.9 2447.5 3948.8 TRUE FALSE FALSE 2257.978561 2357.459759 2895.827348 2849.771553 2257.875728 2485.668172 2474.705394 1944.646199 2346.613014 3925.312362 0.575235383 0.600578895 0.737731697 0.72599867 0.575209186 0.633240859 0.630448017 0.495411835 0.597815613 1 11.93859175 -9.307076772 0.783507167 1.029090674 0.622740083 0 0.141128559 0.266233201 0.25941301 0.069859529 0.014226643 4.93E-10 9.307076772 -0.406350591 DSLLQDGEFSMDLR ddPTM_HeLa_CUDC101_4h_R1 19 DSLLQDGEFSMDLR 14 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 0 ;;;;;;;;;;;;;;;;;; ;;;;;;;;;;;;;;;;;; 336.8 1.42E-190 1775117400 43016.66 39600.87 33642.55 36281.21 41353.58 39278.04 35681.11 36608.87 39773.77 39446.92 FALSE FALSE TRUE 37974.31232 40820.92587 35461.36802 37760.91456 38303.00879 38528.87683 37057.34237 40776.27578 38134.27837 39212.28797 0.968428885 1.041023821 0.904343252 0.962986771 0.976811372 0.982571506 0.945044125 1.039885146 0.972508373 1 15.2590182 -9.560443109 0.71698016 1.004753688 0.974774531 0 0.039295263 2.875120141 1.923275948 0.056611981 0.007227295 2.75E-10 9.560443109 -0.029979156 ELSQCNCIDLSKS(ph)PDPDKSTGTDCR ddPTM_HeLa_CUDC101_4h_R1 1 ELSQCNCIDLSKSPDPDKSTGTDCR 25 2 E9PKY2;A0A0C4DFM7;Q5TAX3;E9PKX1 E9PKY2 ZCCHC11 Terminal uridylyltransferase 4 1 0 ELSQCNCIDLS(0.223)KS(0.769)PDPDKS(0.002)T(0.004)GT(0.001)DCR 59.996 0.0023123 9050500 2063.1 1419.2 1540.8 1399.9 1873.4 1812.9 1677.6 1117.9 1695.8 312.24 TRUE FALSE FALSE 1821.266545 1462.92387 1624.100309 1456.993973 1735.203014 1778.321953 1742.305594 1245.157217 1625.898406 310.3827826 5.867807906 4.71328937 5.232572165 4.694184261 5.590525995 5.729447807 5.613409286 4.011682629 5.238365326 1 8.277904721 -9.307039267 0.821070274 0.734660285 5.251109612 0 1.41058023 0.174177895 0.190562373 0.519680554 0.110710493 4.93E-10 9.307039267 4.516449326 AGEPNSPDAEEANS(ph)PDVTAGCDPAGVHPPR ddPTM_HeLa_CUDC101_4h_R1 4 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 AGEPNSPDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNSPDAEEANS(0.995)PDVT(0.005)AGCDPAGVHPPR;AGEPNSPDAEEANS(0.998)PDVT(0.002)AGCDPAGVHPPR;AGEPNSPDAEEANS(1)PDVTAGCDPAGVHPPR ;;; 154.34 1.10E-16 51523500 5150.41 4321.8 4261.52 3802.52 4947.95 4308.71 4338.24 3957.92 4695.8 3635.9 TRUE FALSE FALSE 4546.686747 4454.949535 4491.910662 3957.603201 4582.949586 4226.528536 4505.56737 4408.473614 4502.237136 3614.273505 1.25798082 1.232598897 1.24282533 1.094992727 1.26801405 1.169399197 1.246603879 1.219739903 1.245682467 1 11.81948997 -9.306853364 0.929531143 0.99410951 1.217423225 0 0.089191867 0.236615799 0.351067441 0.036857318 0.008874406 4.93E-10 9.306853364 0.223313715 AESPS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 AESPSPPR 8 0 P50219 P50219 MNX1 Motor neuron and pancreas homeobox protein 1 1 0 AES(0.006)PS(0.994)PPR 89.029 0.030612 11154000 2770.9 2304.8 2938.2 3286.8 3058.8 2205.3 2872.1 1439.8 3149 3947.5 TRUE FALSE FALSE 2446.099302 2375.808156 3097.04798 3420.849911 2833.158418 2163.237577 2982.877859 1603.701012 3019.196887 3924.020094 0.623365641 0.605452597 0.789253853 0.871771762 0.722004054 0.551280963 0.760158661 0.408688277 0.769414227 1 11.93811671 -9.306847318 0.842904433 1.018041802 0.672907635 0.207267807 0.142778449 0.475385444 0.55496905 0.109716677 0.023985869 4.93E-10 9.306847318 -0.345134167 DSLYVDGDCTMDIR ddPTM_HeLa_CUDC101_4h_R1 4 DSLYVDGDCTMDIR 14 0 C9J0J7;G5E9Q6;P35080-2;C9J712;C9JQ45;C9J2N0;P35080 C9J0J7 PFN2 Profilin;Profilin-2 0 0 ;;; ;;; 290.51 3.12E-103 57556000 7776.1 6774.5 5861.76 5378.3 6087.58 5438.01 5971.52 5951.64 6069.02 3705.66 FALSE FALSE TRUE 6864.597346 6983.214315 6178.664476 5597.650321 5638.511352 5334.28902 6201.843527 6629.15064 5818.852427 3683.61857 1.863547275 1.895748483 1.677335576 1.519606391 1.530699025 1.448111122 1.683628044 1.799630042 1.579656611 1 11.84690797 -9.360724393 1.067069877 0.997305604 1.680058509 0.175559183 0.223243088 0.224170437 0.453929542 0.115028576 0.029418174 4.36E-10 9.360724393 0.682752906 TPQASTYSY(ph)ETSDLCYTAEKK ddPTM_HeLa_CUDC101_4h_R1 1 TPQASTYSYETSDLCYTAEKK 21 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.029)PQAS(0.102)T(0.052)Y(0.128)S(0.15)Y(0.523)ET(0.011)S(0.005)DLCY(0.001)TAEKK 59.574 0.019778 11899000 1190.3 1021.1 1003.8 884.29 1120.8 917.14 811.55 777.28 1073.1 593.93 TRUE FALSE FALSE 1050.774838 1052.558881 1058.068464 920.3551684 1038.120817 899.6470826 842.8517554 865.7624133 1028.866364 590.3972779 1.779775886 1.782797652 1.792129645 1.558874342 1.758342824 1.52379951 1.427601019 1.466406512 1.742667865 1 9.20554226 -9.306814845 1.003553603 0.995559157 1.644088628 0 0.261227481 0.226009742 0.403392311 0.10525248 0.02733486 4.93E-10 9.306814845 0.648529471 TTHLAGALS(ph)PGGGQSAPAFPESGPSLR ddPTM_HeLa_CUDC101_4h_R1 1 TTHLAGALSPGGGQSAPAFPESGPSLR 27 0 A0A2R8Y4Z8 A0A2R8Y4Z8 1 0 TTHLAGALS(0.999)PGGGQSAPAFPESGPSLR 82.948 8.61E-06 13498000 1053.1 942.79 885.75 912.94 1264.2 1118.6 1053.1 837.08 1121.8 1421.1 TRUE FALSE FALSE 929.6572144 971.8362424 933.6363242 950.1736393 1170.942485 1097.264569 1093.71842 932.3698036 1075.558929 1412.647234 0.658095802 0.687953948 0.660912577 0.672619191 0.828899428 0.776743508 0.774233222 0.660016019 0.761378286 1 10.46418553 -9.306663087 0.975051175 1.00405197 0.715540154 0.199512898 0.091433711 0.225737239 0.376029482 0.04627557 0.011684734 4.94E-10 9.306663087 -0.288511817 RPMEEDGEEKSPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 RPMEEDGEEKSPSK 14 2 Q12906-7;Q12906-4;Q12906-6;Q12906;Q12906-5;Q12906-2;Q12906-3 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 RPMEEDGEEKS(0.161)PS(0.839)K 77.505 0.025944 810540000 6961.8 6101.2 5912.8 6388 6350.9 6214.4 5761.7 6523.4 6426 7098.6 TRUE FALSE FALSE 6145.748357 6289.17074 6232.463853 6648.530251 5882.40676 6095.870674 5983.930699 7265.997488 6161.11756 7056.377211 0.870949522 0.891274737 0.883238476 0.94220165 0.833629862 0.863881067 0.848017406 1.029706501 0.87312758 1 12.78471197 -9.305514261 0.907310386 1.003647982 0.890471215 0 0.065816278 0.512079692 0.716694506 0.040007022 0.009422429 4.95E-10 9.305514261 -0.113176767 DSNNLCLHFNPR ddPTM_HeLa_CUDC101_4h_R1 4 DSNNLCLHFNPR 12 0 P09382 P09382 LGALS1 Galectin-1 0 0 ;;; ;;; 148.13 0.00071762 126603500 17571.6 12928.2 10082.1 11640.1 14692.5 13370 12351.1 12237.4 11302.6 4428.88 FALSE FALSE TRUE 15511.88368 13326.50252 10627.16882 12114.83359 13608.66355 13114.98953 12827.48606 13630.45615 10836.70204 4402.536825 3.523396692 3.027005349 2.41387392 2.751784726 3.091095904 2.978961914 2.913657869 3.096045915 2.461467666 1 12.10411936 -9.376119806 1.014062872 0.958554718 2.994106925 0.382614511 0.511818231 0.16049179 0.285628195 0.242628577 0.057674324 4.21E-10 9.376119806 2.035552207 GSQGGNFEGPNK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GSQGGNFEGPNKR 13 1 Q8WXF1 Q8WXF1 PSPC1 Paraspeckle component 1 0 1 ; GSQGGNFEGPNK(1)R;GSQGGNFEGPNK(1)R 190.66 1.08E-08 4299230 376.51 824.41 737.46 869.1 1183 1089.93 1108.21 1449.91 318.88 552.23 FALSE TRUE FALSE 332.3760686 849.8090949 777.3293183 904.5456546 1095.732447 1069.141401 1150.954031 1614.961894 305.7356314 548.9453114 0.605481205 1.54807606 1.416041457 1.647788287 1.996068505 1.947628259 2.096664289 2.941935854 0.556950984 1 9.100518618 -5.675963188 0.519870949 0.800928859 2.771629338 0.846782281 0.271052437 0.41213359 0.169399772 0.073041536 0.387873591 2.11E-06 5.675963188 1.970700479 QS(ph)PSPSTRPIR ddPTM_HeLa_CUDC101_4h_R1 1 QSPSPSTRPIR 11 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 QS(0.791)PS(0.204)PS(0.005)TRPIR 76.332 0.026464 43956000 2545.4 2322.4 2664.5 2478.2 2386.6 2639.6 2262.7 1981.7 2792.3 3756.7 TRUE FALSE FALSE 2247.032071 2393.950391 2808.55093 2579.271708 2210.545273 2589.254028 2349.973097 2207.288718 2677.200212 3734.354981 0.601718927 0.641061282 0.752084615 0.69068734 0.591948351 0.693360444 0.629284872 0.591076298 0.716911013 1 11.86664336 -9.305470113 0.796023155 1.025217248 0.648026082 0.263426259 0.099333024 0.205389345 0.208306236 0.050395404 0.010443135 4.95E-10 9.305470113 -0.377191165 LQS(ph)PIKEENTTAVEEIGR ddPTM_HeLa_CUDC101_4h_R1 1 LQSPIKEENTTAVEEIGR 18 1 S4R3P6;S4R3N2;A0A087X1L0;Q9NS73-3;Q9NS73-2;Q9NS73-5;Q9NS73;S4R3Y0;S4R2X9 S4R3P6 MBIP MAP3K12-binding inhibitory protein 1 1 0 LQS(0.62)PIKEENT(0.283)T(0.097)AVEEIGR 61.52 0.021539 25848000 1238 1076.9 1042.8 1064.3 891.35 1103.5 954.3 900.64 970.18 801.36 TRUE FALSE FALSE 1092.883517 1110.078013 1099.176922 1107.706754 825.5968863 1082.452576 991.1076707 1003.165217 930.1887698 796.5934751 1.371946358 1.39353139 1.379846756 1.390554642 1.036409301 1.358851924 1.244182512 1.259318898 1.167708246 1 9.637699852 -9.304164042 1.01649135 0.999051005 1.306778989 0.341240424 0.114179829 0.328283579 0.604703637 0.072785864 0.01921151 4.96E-10 9.304164042 0.307727984 DSPSVWAAVPGK ddPTM_HeLa_CUDC101_4h_R1 2 DSPSVWAAVPGK 12 0 P07737;CON__P02584;I3L3D5 P07737 PFN1 Profilin-1 0 0 ; ; 172.88 3.91E-06 37326000 5526.9 4530 4900 4439.9 4501.7 4161.1 4212.9 4164.3 4223.6 5127.9 FALSE FALSE TRUE 4879.04516 4669.563931 5164.908822 4620.978313 4169.61856 4081.73395 4375.392964 4638.347079 4049.50142 5097.399023 0.957163671 0.916067961 1.01324397 0.906536509 0.817989438 0.800748368 0.858357948 0.909943887 0.79442504 1 12.31554558 -6.010491319 4.343953398 0.97553875 0.845076161 0.178779968 0.067743978 0.081517436 3.760110258 0.005786848 0.010272633 9.76E-07 6.010491319 -0.130462589 DSQDAGGFGPEDR ddPTM_HeLa_CUDC101_4h_R1 3 DSQDAGGFGPEDR 13 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ;; ;; 175.48 1.36E-06 62495000 6288.8 5435.5 5350.47 5112.4 5886 5251.5 4943.97 4789.46 5908.5 5841.9 FALSE FALSE TRUE 5551.636397 5602.961312 5639.732592 5320.90577 5451.801507 5151.336387 5134.660579 5334.672767 5664.949129 5807.152119 0.955999823 0.964838048 0.971170115 0.916267675 0.93880811 0.887067582 0.884195983 0.918638372 0.975512439 1 12.50361511 -5.553014943 0.220880909 1.006602772 0.839141619 0.742426789 0.018734795 2.131294768 0.160374004 0.02329441 0.10306664 2.80E-06 5.553014943 -0.167461153 SAGGSS(ph)PEGGEDS(ph)DREDGNYCPPVK ddPTM_HeLa_CUDC101_4h_R1 1 SAGGSSPEGGEDSDREDGNYCPPVK 25 1 B7Z7F3;Q9H6Z4-3;Q9H6Z4-2;Q9H6Z4;K7EID7;K7ENB9 B7Z7F3 RANBP3 Ran-binding protein 3 2 0 S(0.002)AGGS(0.134)S(0.866)PEGGEDS(0.913)DREDGNY(0.085)CPPVK 75.703 0.00031911 6076100 3704.4 3230.3 3247.9 3351.3 3438.7 3539.4 3062.3 2804.3 3465.1 4364.2 TRUE FALSE FALSE 3270.175848 3329.821714 3423.491298 3487.9805 3185.033952 3471.891842 3180.413937 3123.530177 3322.267111 4338.241544 0.75380216 0.767551018 0.78914262 0.804007906 0.73417626 0.800299339 0.733111309 0.719999139 0.765809621 1 12.08289467 -9.303915166 0.608778184 1.03865886 0.759163219 0 0.077832253 0.249226661 0.131074504 0.03910797 0.006448548 4.97E-10 9.303915166 -0.279495641 (ac)MLLS(ph)QGLGVLRVAWDSR ddPTM_HeLa_CUDC101_4h_R1 1 MLLSQGLGVLRVAWDSR 17 1 Q6NUI2-5 Q6NUI2-5 1 0 MLLS(0.995)QGLGVLRVAWDS(0.005)R 50.786 0.020699 42162000 1963.2 1584.4 1713.9 1715.8 1712 1597.1 1535.9 1961.2 1529.1 1260.7 TRUE FALSE FALSE 1733.076672 1633.213486 1806.558618 1785.77774 1585.709171 1566.637978 1595.140177 2184.455081 1466.069851 1253.2013 1.382919625 1.303233156 1.441555014 1.42497278 1.265326784 1.250108804 1.272852316 1.743099915 1.169859823 1 10.29140246 -9.303640978 0.572412863 0.930033152 1.384027911 0.385585603 0.145338758 0.804189653 0.365256972 0.197474896 0.031242813 4.97E-10 9.303640978 0.453994759 S(ph)VQEGENPDDGVR ddPTM_HeLa_CUDC101_4h_R1 2 SVQEGENPDDGVR 13 0 H7C5M1;Q5TCT4;A2A2V2;P42696-2;P42696 H7C5M1 RBM34 RNA-binding protein 34 1 0 S(1)VQEGENPDDGVR;S(1)VQEGENPDDGVR ; 189.52 2.62E-11 49287000 1028.61 759.77 972.5 860.73 1027.84 1076.95 826.47 800.85 980.37 581.48 TRUE FALSE FALSE 908.0378951 783.1776132 1025.076292 895.8342898 952.0182909 1056.408973 858.3472247 892.0155269 939.9587336 578.0213311 1.570941843 1.354928566 1.773422946 1.549829118 1.647029685 1.827629737 1.484974998 1.543222506 1.626166169 1 9.174978924 -9.303496191 0.451013291 0.830778193 1.632488875 0 0.231712135 0.674282537 0.178235891 0.251191002 0.03601472 4.97E-10 9.303496191 0.801710681 T(ph)IGGGDDSFTTFFCETGAGK ddPTM_HeLa_CUDC101_4h_R1 1 TIGGGDDSFTTFFCETGAGK 20 0 P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 P68366-2 TUBA4A Tubulin alpha-4A chain 1 0 T(0.709)IGGGDDS(0.276)FT(0.011)T(0.003)FFCETGAGK 101.6 0.0008775 4610200 6985 5563.2 5331.4 4531.8 6119.2 6287.2 4916.9 5230.7 6414.6 2581.5 TRUE FALSE FALSE 6166.228889 5734.595598 5619.631611 4716.626392 5667.798807 6167.282135 5106.54648 5826.141745 6150.187473 2566.145123 2.402915109 2.234712116 2.189911849 1.83802013 2.208682103 2.403325548 1.989967923 2.270386695 2.396663937 1 11.32538705 -9.303441028 0.898757172 0.957560238 2.195640274 0 0.45765988 0.168909983 0.231209867 0.143677352 0.033621286 4.97E-10 9.303441028 1.238080035 DSRDPMYR ddPTM_HeLa_CUDC101_4h_R1 1 DSRDPMYR 8 1 Q9HCD5;Q5JY17 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 0 0 116.9 0.00051691 0 753.34 567.14 646.48 856.94 696.98 644.78 825.26 869.34 841.48 780.23 FALSE FALSE TRUE 665.0346272 584.6129112 681.4306643 891.8897172 645.565174 632.4818958 857.0905546 968.3021516 806.7938382 775.5891573 0.857457355 0.753766225 0.878597461 1.149951245 0.832354563 0.815485737 1.105083209 1.248473038 1.040233519 1 9.599148824 -4.561563368 4.58120956 0.917057845 1.221395739 0.48116102 0.112647368 0.114188203 5.357137021 0.015669713 0.069348853 2.74E-05 4.561563368 0.304337894 SGS(ph)FSKLRASIR ddPTM_HeLa_CUDC101_4h_R1 1 SGSFSKLRASIR 12 2 Q07866-6;Q07866-4;G3V5R9;Q07866-9;H0YG16;G3V3H3;Q07866-10;Q07866-5 Q07866-6 KLC1 Kinesin light chain 1 1 0 S(0.019)GS(0.49)FS(0.49)KLRASIR 75.229 0.037658 60374000 2322 1773 2104.8 1972.9 2541.7 2184.4 1915.3 2035.9 1761.3 2370.7 TRUE FALSE FALSE 2049.81868 1827.624028 2218.591855 2053.36339 2354.203855 2142.736209 1989.173763 2267.658627 1688.698469 2356.598971 0.869820748 0.775534595 0.941438014 0.871324911 0.998983656 0.909249404 0.844086663 0.962259024 0.716582876 1 11.20249056 -9.302718677 1.095228849 0.998411223 0.894265323 0 0.106207441 0.48384222 1.062807663 0.037171885 0.010562918 4.98E-10 9.302718677 -0.104145899 VHAPGLNLS(ph)GVGGK ddPTM_HeLa_CUDC101_4h_R1 2 VHAPGLNLSGVGGK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VHAPGLNLS(1)GVGGK;VHAPGLNLS(1)GVGGK ; 112.67 0.0018787 25871000 10006.4 9163.8 8287.1 8685.7 9292.3 10009 9169.2 7355 9515.6 10645.5 TRUE FALSE FALSE 8833.464961 9446.125816 8735.125693 9039.940389 8606.825542 9818.095001 9522.859115 8192.26347 9123.36294 10582.18009 0.834749067 0.892644591 0.825456155 0.854260683 0.813331985 0.927795115 0.899895771 0.774156497 0.862143987 1 13.36934926 -9.302560627 0.796440713 1.01024098 0.854088874 0.037955794 0.060108715 0.388405651 0.395025253 0.039428501 0.008208461 4.98E-10 9.302560627 -0.156152106 KSST(ph)SGSDFDTK ddPTM_HeLa_CUDC101_4h_R1 1 KSSTSGSDFDTK 12 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 KS(0.029)S(0.229)T(0.515)S(0.139)GS(0.086)DFDT(0.002)K 132.24 0.0070105 14362000 2784 1694.3 3608.9 3495.3 2743.4 2750.4 2768.2 1629.4 3144.3 4041.5 TRUE FALSE FALSE 2457.66374 1746.499375 3804.00805 3637.853442 2541.024848 2697.940702 2874.970401 1814.88431 3014.690623 4017.460978 0.611745516 0.434727153 0.946868699 0.905510585 0.632495216 0.67155368 0.715618749 0.451749082 0.750396989 1 11.9720683 -9.302534363 0.998345465 1.002461425 0.677525226 0.121925584 0.17269814 0.482453972 0.851844214 0.112156942 0.029151553 4.98E-10 9.302534363 -0.324936199 DSRPSQAAGDNQGDEAK ddPTM_HeLa_CUDC101_4h_R1 3 DSRPSQAAGDNQGDEAK 17 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 0 ;; ;; 105 0.0011881 3411500 1832.4 1398.07 1728.65 1867.68 1614.26 1423.67 1622.36 1409.93 1624.82 2010.67 FALSE FALSE TRUE 1617.60885 1441.14288 1822.106048 1943.852063 1495.179256 1396.515867 1684.934969 1570.430732 1557.844232 1998.710445 0.80932626 0.721036348 0.911640829 0.972553112 0.748071968 0.698708445 0.843011039 0.785721982 0.779424671 1 10.96485377 -9.261373081 0.614420709 1.028051023 0.808939412 0 0.105010258 0.877272288 0.483601677 0.107649614 0.018927164 5.48E-10 9.261373081 -0.219111611 AAS(ph)LTEDR ddPTM_HeLa_CUDC101_4h_R1 2 AASLTEDR 8 0 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 AAS(0.996)LT(0.004)EDR;AAS(0.962)LT(0.038)EDR ; 143.04 0.0042775 43960000 5798.8 4270.4 4828.7 4099.7 2905.3 1573.64 1253.76 1099.31 4332.4 5551.6 TRUE FALSE FALSE 5119.073454 4401.965962 5089.754128 4266.903486 2690.981807 1543.625439 1302.117943 1224.451007 4153.816638 5518.578836 0.927607199 0.797662966 0.922294359 0.773188825 0.487622246 0.279714304 0.235951679 0.221877959 0.752696801 1 12.43008107 -5.669666421 1.146364438 0.955970594 0.198312743 0.920274827 0.081757244 0.057866208 0.147272805 0.009199172 0.028440564 2.14E-06 5.669666421 -0.757657851 down NAPHPDDDDSCSINS(ph)DPEAK ddPTM_HeLa_CUDC101_4h_R1 1 NAPHPDDDDSCSINSDPEAK 20 0 H0YAJ5;G5E9Y1;Q92870-2;Q92870;Q92870-4 H0YAJ5 APBB2 Amyloid beta A4 precursor protein-binding family B member 2 1 0 NAPHPDDDDSCS(0.065)INS(0.935)DPEAK 115.5 4.41E-05 9399600 2017.1 2013.2 1388.5 1379.3 1649.3 1696.8 1539.4 1085.3 1700.2 810.55 TRUE FALSE FALSE 1780.658596 2075.224306 1463.56651 1435.553816 1527.634425 1664.436367 1598.775174 1208.846165 1630.117036 805.7288126 2.209997418 2.575586566 1.816450507 1.781683606 1.895965989 2.065752572 1.984259653 1.500313935 2.023158426 1 9.654150536 -9.301685169 1.030865936 1.000804285 1.996736297 0 0.409355911 0.266690499 0.508352765 0.192078778 0.051570978 4.99E-10 9.301685169 0.995932012 SGDEGS(ph)EDEAPSGED ddPTM_HeLa_CUDC101_4h_R1 2 SGDEGSEDEAPSGED 15 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 S(0.002)GDEGS(0.998)EDEAPSGED;S(0.15)GDEGS(0.85)EDEAPSGED ; 166.45 1.55E-05 31395000 8068.9 7091.7 7581.2 6493.8 7951.5 7530.9 7116 5936.8 9353.3 10000.6 TRUE FALSE FALSE 7123.075774 7310.186871 7991.062604 6758.645233 7364.933687 7387.26063 7390.466504 6612.621315 8967.753015 9941.115986 0.716526775 0.735348716 0.803839591 0.679867858 0.740855825 0.743101744 0.743424231 0.665178972 0.902087153 1 13.2791921 -9.301568232 0.621957307 1.041748297 0.725205029 0.775998942 0.046577661 0.261322993 0.144909584 0.047013766 0.007900528 4.99E-10 9.301568232 -0.316543268 S(ph)PPDGQSFR ddPTM_HeLa_CUDC101_4h_R1 1 SPPDGQSFR 9 0 P78314;P78314-3;P78314-4;H0YAD9 P78314 SH3BP2 SH3 domain-binding protein 2 1 0 S(1)PPDGQSFR 90.827 0.027507 4594900 507.57 488.95 501.69 402.18 445.55 514 572.2 440.74 507.52 728.51 TRUE FALSE FALSE 448.073414 504.01397 528.8128789 418.5826388 412.6826642 504.1963064 594.2699457 490.9120601 486.5998108 724.1767901 0.618734845 0.695981944 0.730226218 0.578011674 0.569864527 0.696233728 0.82061446 0.677889801 0.67193511 1 9.500198129 -9.301549007 0.864593745 1.015048525 0.671348832 0 0.122191559 0.27915384 0.347800437 0.064781168 0.014629348 4.99E-10 9.301549007 -0.343699693 QDDGSSSAS(ph)PSVQGAPR ddPTM_HeLa_CUDC101_4h_R1 2 QDDGSSSASPSVQGAPR 17 0 Q9NQA3 Q9NQA3 WASH6P WAS protein family homolog 6 1 0 QDDGSS(0.001)S(0.014)AS(0.894)PS(0.09)VQGAPR;QDDGS(0.001)S(0.019)S(0.034)AS(0.876)PS(0.069)VQGAPR ; 174.15 3.22E-07 38769000 3692.8 3495.8 3160.2 3400.7 4614.3 3549 3367 2190.11 4573.5 4939.9 TRUE FALSE FALSE 3259.935582 3603.501454 3331.049971 3539.395245 4273.912282 3481.308738 3496.866318 2439.42327 4384.978394 4910.517255 0.663868064 0.733833376 0.67835012 0.720778497 0.870358877 0.708949497 0.712117713 0.496775216 0.892976883 1 12.26165929 -9.301285491 0.795013743 1.021078742 0.702315474 0.527024047 0.091829917 0.396779229 0.402020332 0.082119283 0.017097589 5.00E-10 9.301285491 -0.318763268 APS(ph)LTNDEVEEFR ddPTM_HeLa_CUDC101_4h_R1 1 APSLTNDEVEEFR 13 0 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 0 APS(0.909)LT(0.091)NDEVEEFR 113.67 0.0036531 2884700 282.98 299.94 266.93 230.4 236.16 298.01 292.4 255.17 318.37 456.64 TRUE FALSE FALSE 249.8095134 309.1807959 281.3610432 239.7967079 218.7389473 292.3259558 303.6779659 284.2175214 305.2466538 453.923885 0.550333485 0.681129163 0.6198419 0.528275149 0.481884639 0.643997739 0.66900636 0.626134757 0.672462199 1 8.826306593 -9.300799558 0.751806612 1.035466057 0.595017054 0.234885896 0.116959447 0.243301718 0.214760012 0.067644388 0.0133692 5.00E-10 9.300799558 -0.440449003 NST(ph)PSEPGSGR ddPTM_HeLa_CUDC101_4h_R1 4 NSTPSEPGSGR 11 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 NS(0.104)T(0.894)PS(0.002)EPGSGR;NS(0.013)T(0.973)PS(0.013)EPGSGR;NS(0.004)T(0.94)PS(0.056)EPGSGR;NS(0.01)T(0.687)PS(0.301)EPGS(0.001)GR ;;; 144.51 0.0054792 776547500 28864.4 22496.1 26577.4 27262.1 25124.1 25687.2 23657.2 29422.6 28499.6 29325 TRUE FALSE FALSE 25480.95879 23189.17818 28014.25464 28373.96627 23270.7452 25197.25946 24569.66613 32771.94985 27324.83443 29150.5736 0.874115177 0.795496463 0.961018985 0.973358764 0.79829459 0.864382973 0.842853608 1.124230017 0.937368671 1 14.83123665 -9.300646849 1.06301142 0.999135329 0.89692508 0.050875857 0.094616471 0.771899049 1.582369032 0.057606082 0.015954372 5.00E-10 9.300646849 -0.10221025 GGASS(ph)SCCEEEQTQGR ddPTM_HeLa_CUDC101_4h_R1 2 GGASSSCCEEEQTQGR 16 0 Q9UJK0 Q9UJK0 TSR3 Ribosome biogenesis protein TSR3 homolog 1 0 GGAS(0.003)S(0.757)S(0.24)CCEEEQTQGR;GGAS(0.014)S(0.959)S(0.027)CCEEEQTQGR ; 238.83 1.56E-43 18240200 4061.8 3195.7 3195.5 3180.8 3095.6 2900.3 3146.8 3011.8 3447.7 1339.88 TRUE FALSE FALSE 3585.681961 3294.155729 3368.258396 3310.526773 2867.243755 2844.98161 3268.17313 3354.651138 3305.584347 1331.910334 2.69213465 2.473256378 2.528892756 2.485547779 2.152730317 2.136015869 2.453748609 2.518676409 2.481836999 1 10.37928125 -9.300152038 0.923804811 0.961204419 2.433425032 0 0.478771027 0.148428866 0.217567559 0.151652077 0.036634737 5.01E-10 9.300152038 1.472220613 TVEDEDQDSEEEKDNDS(ph)YIK ddPTM_HeLa_CUDC101_4h_R1 1 TVEDEDQDSEEEKDNDSYIK 20 1 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 TVEDEDQDS(0.314)EEEKDNDS(0.343)Y(0.343)IK 51.348 0.031015 15092000 2098.4 1924.9 1696.4 2196.6 1986.1 1759.7 1591.7 1892.3 2299.9 2840.9 TRUE FALSE FALSE 1852.428733 1984.203887 1788.112515 2286.186843 1839.58936 1726.136654 1653.092402 2107.711783 2205.097149 2824.0022 0.655958672 0.702621226 0.633183825 0.809555617 0.651412155 0.611237716 0.585372208 0.746356282 0.780841158 1 11.4635255 -9.29996002 0.618768943 1.05126865 0.665519911 0.381420316 0.092178145 0.383235592 0.210093782 0.083740574 0.014049247 5.01E-10 9.29996002 -0.385748739 TEVALAKDMES(ph)PTKLDVTLAK ddPTM_HeLa_CUDC101_4h_R1 1 TEVALAKDMESPTKLDVTLAK 21 2 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;H7C456 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 T(0.007)EVALAKDMES(0.477)PT(0.477)KLDVT(0.04)LAK 61.767 0.013051 10198000 721.08 630.59 543.67 665.28 647.13 752.57 742.81 538.23 651.31 771.77 TRUE FALSE FALSE 636.5560955 650.0177305 573.0624447 692.412994 599.3925092 738.2159811 771.4604305 599.4999276 624.4627261 767.1794777 0.829735563 0.84728248 0.746973116 0.902543686 0.781293721 0.962246779 1.005580119 0.781433739 0.813972146 1 9.583420318 -9.299709211 1.012944664 1.000402112 0.859148903 0 0.095831539 0.526028199 0.962498384 0.053366298 0.014123864 5.02E-10 9.299709211 -0.141253209 RASQGLLSSIENSES(ph)DSSEAKEEGSR ddPTM_HeLa_CUDC101_4h_R1 1 RASQGLLSSIENSESDSSEAKEEGSR 26 2 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 RASQGLLSSIENS(0.166)ES(0.738)DS(0.04)S(0.04)EAKEEGS(0.016)R 54.559 0.0050135 7581300 1004.9 853.48 705.5 786.25 993.09 884.12 866.22 744.89 847.11 567.57 TRUE FALSE FALSE 887.1071453 879.7747072 743.641464 818.3166735 919.8317292 867.256884 899.6303956 829.6852667 812.1917673 564.1940684 1.572343977 1.559347672 1.318059699 1.450417009 1.630346331 1.537160585 1.594540684 1.470567156 1.439560982 1 9.140047688 -9.299666837 0.726795371 0.948227684 1.523586928 0.174350616 0.159430526 0.27192109 0.220917722 0.096997888 0.018614204 5.02E-10 9.299666837 0.575359245 S(ph)PAKSPNPSTPR ddPTM_HeLa_CUDC101_4h_R1 1 SPAKSPNPSTPR 12 1 J3QSV6;O76021-2;O76021 J3QSV6 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 S(1)PAKSPNPSTPR 111.81 0.026486 19116000 1886.5 1734.2 1385.3 1415.7 1889.9 1867.6 1263.6 893.06 1707.5 1017.2 TRUE FALSE FALSE 1665.36733 1787.628646 1460.193508 1473.438365 1750.485842 1831.978642 1312.337475 994.7223405 1637.116127 1011.149649 1.647003815 1.767916992 1.444092385 1.457191195 1.731183751 1.811777953 1.297866717 0.98375383 1.61906413 1 9.981780815 -9.299389105 1.009366357 0.997926309 1.536259697 0 0.301716882 0.438253683 0.79526305 0.169216181 0.044649767 5.02E-10 9.299389105 0.538333388 SKPVLEPLT(ph)PPLGSPRPR ddPTM_HeLa_CUDC101_4h_R1 2 SKPVLEPLTPPLGSPRPR 18 2 H7BXC7;Q9H7P9-3;Q9H7P9;E7ESZ3;Q9H7P9-2 H7BXC7 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 0 SKPVLEPLT(0.965)PPLGS(0.035)PRPR;SKPVLEPLT(1)PPLGSPRPR ; 112.14 0.0010861 63240000 1700.08 1427.06 1544.66 1327.23 1798.53 1630.03 1407.02 1715.73 1682.44 1898.65 TRUE FALSE FALSE 1500.7992 1471.026027 1628.168992 1381.360176 1665.856025 1598.939894 1461.289233 1911.041768 1613.089111 1887.356745 0.795185756 0.779410692 0.862671562 0.731902 0.882639718 0.847184772 0.774251734 1.012549309 0.854681615 1 10.88215143 -9.29891018 0.991701916 1.001389777 0.829509357 0.059160478 0.085493049 0.394513565 0.686486961 0.048322756 0.012540464 5.02E-10 9.29891018 -0.17188042 S(ph)STDSLPGPISR ddPTM_HeLa_CUDC101_4h_R1 3 SSTDSLPGPISR 12 0 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 0 S(0.937)S(0.063)TDSLPGPISR;S(0.46)S(0.46)T(0.08)DSLPGPISR;S(0.882)S(0.112)T(0.005)DS(0.001)LPGPISR ;; 207.47 2.64E-23 41312000 5134.5 4648.4 4150.3 4241.5 4721.1 4563.7 4186 4215.5 5296.8 5399.8 TRUE FALSE FALSE 4532.641693 4791.611694 4374.677772 4414.486703 4372.833859 4476.655026 4347.455422 4695.37548 5078.463662 5367.681749 0.844431899 0.892678053 0.815003194 0.822419605 0.814659673 0.834001574 0.809931666 0.874749231 0.946118622 1 12.39008342 -9.298265159 0.452240015 1.045769057 0.827367427 0.766891711 0.029339832 0.474124487 0.12646176 0.048180821 0.006956148 5.03E-10 9.298265159 -0.21840163 KETES(ph)EAEDNLDDLEK ddPTM_HeLa_CUDC101_4h_R1 9 KETESEAEDNLDDLEK 16 1 A9Z1X7;Q8IYB3;Q8IYB3-2 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KET(0.175)ES(0.825)EAEDNLDDLEK;KET(0.09)ES(0.91)EAEDNLDDLEK;KET(0.271)ES(0.729)EAEDNLDDLEK;KET(0.348)ES(0.652)EAEDNLDDLEK;KET(0.258)ES(0.742)EAEDNLDDLEK;KET(0.002)ES(0.998)EAEDNLDDLEK;KET(0.112)ES(0.888)EAEDNLDDLEK;KET(0.039)ES(0.961)EAEDNLDDLEK;KET(0.001)ES(0.999)EAEDNLDDLEK ;;;;;;;; 136.61 0.0002062 3697649000 38446 32511.7 34516.7 31923 35319.2 33762.8 31609.8 33391.3 34843.5 36901 TRUE FALSE FALSE 33939.41816 33513.34694 36382.77721 33224.95792 32713.77298 33118.83084 32829.00057 37192.43062 33407.23618 36681.51121 0.925245908 0.913630487 0.991856006 0.905768515 0.891832749 0.902875311 0.894974048 1.013928527 0.910737728 1 15.16276546 -9.298207515 0.582286009 1.0129714 0.925460187 0 0.048027943 1.157535755 0.549260597 0.055314681 0.008913238 5.03E-10 9.298207515 -0.087511213 NMTVEQLLTGS(ph)PTS(ph)PTVEPEKPTR ddPTM_HeLa_CUDC101_4h_R1 1 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 2 0 NMTVEQLLT(0.113)GS(0.837)PT(0.241)S(0.508)PT(0.301)VEPEKPTR 71.299 0.00071413 0 903.81 786.44 792.61 729.63 967.14 887.92 886.43 611.79 1072.9 980.41 TRUE FALSE FALSE 797.8667619 810.6692842 835.4608941 759.3874651 895.796009 870.9844054 920.619902 681.4337007 1028.674608 974.5784777 0.818678824 0.831815295 0.857253585 0.779195809 0.919162519 0.893703714 0.944633935 0.699208649 1.055507208 1 9.928634553 -9.29817396 0.942019139 1.003267355 0.847018949 0.515828424 0.069772903 0.440667527 0.677815736 0.048117752 0.011883176 5.03E-10 9.29817396 -0.156248406 S(ph)VENLPECGITHEQR ddPTM_HeLa_CUDC101_4h_R1 5 SVENLPECGITHEQR 15 0 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;Q9UBF8-3;F8W860 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR ;;;; 237.16 1.43E-43 754790000 29183.1 23805.5 22896.1 22948 26466.7 24515.1 22305.4 22903.4 24724.2 16556 TRUE FALSE FALSE 25762.30126 24538.91924 24133.93242 23883.91863 24514.30427 24047.51531 23165.72675 25510.63048 23705.05801 16457.52418 1.565381341 1.491045614 1.46643761 1.451246152 1.489549947 1.461186692 1.407607031 1.5500892 1.440378137 1 14.0064597 -9.296704715 0.885838777 0.981628446 1.485549047 0.131156838 0.140817826 0.122901355 0.162876139 0.042186086 0.009824299 5.05E-10 9.296704715 0.503920601 S(ph)VEPQDAGPLER ddPTM_HeLa_CUDC101_4h_R1 4 SVEPQDAGPLER 12 0 Q9NZT2-2;Q9NZT2;A0A0A0MRN5 Q9NZT2-2 OGFR Opioid growth factor receptor 1 0 S(1)VEPQDAGPLER;S(1)VEPQDAGPLER;S(1)VEPQDAGPLER;S(1)VEPQDAGPLER ;;; 165.49 4.36E-05 67661000 4458.05 4156.42 3755.83 3673.88 3942.07 3893.02 3818.84 4419.98 4120.89 4757.98 TRUE FALSE FALSE 3935.484137 4284.474374 3958.881531 3823.716706 3651.27135 3818.76713 3966.133938 4923.132657 3951.02517 4729.679323 0.832082657 0.90586995 0.837029587 0.808451577 0.771991313 0.807405084 0.838562969 1.040901998 0.83536851 1 12.20752666 -9.296566554 0.730734565 1.014459581 0.847401445 0 0.087086729 0.716495101 0.590921969 0.074361489 0.014403015 5.05E-10 9.296566554 -0.167058136 HPPLYQAGLTPPLS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 1 HPPLYQAGLTPPLSPPK 17 0 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 HPPLYQAGLT(0.003)PPLS(0.997)PPK 115.98 0.00053213 29241000 1165.3 1090.6 957.37 1129.3 1172.5 1172.9 1027 1100.9 1097.1 1540.6 TRUE FALSE FALSE 1028.7053 1124.200093 1009.128318 1175.357735 1086.007011 1150.528887 1066.611734 1226.222006 1051.877074 1531.436443 0.671725755 0.734082109 0.658942343 0.767487114 0.709142724 0.75127433 0.696477963 0.800700553 0.686856499 1 10.58066978 -9.296437759 0.907030725 1.008711931 0.720005969 0 0.104045625 0.163099579 0.229016105 0.032390114 0.007724098 5.05E-10 9.296437759 -0.288705962 TSGAPGS(ph)PQTPPER ddPTM_HeLa_CUDC101_4h_R1 2 TSGAPGSPQTPPER 14 0 K7ESM2;K7ELS4;K7EJA3;K7ERG7;Q96MH2;K7EIM4 K7ESM2 HEXIM2 Protein HEXIM2 1 0 TSGAPGS(0.682)PQT(0.318)PPER;TSGAPGS(0.991)PQT(0.009)PPER ; 153.2 0.00014705 41488000 5856.2 5018.9 5140.8 5400.4 6007 5365.7 4845 5390.1 5749.8 6576.4 TRUE FALSE FALSE 5169.745113 5173.52636 5418.727198 5620.651655 5563.875578 5263.358212 5031.873273 6003.687196 5512.79081 6537.28328 0.790809407 0.791387819 0.828895883 0.859784013 0.851099048 0.805129285 0.769719325 0.918376478 0.843284676 1 12.6744755 -9.296084579 0.944536654 1.003574558 0.823354044 0.09478764 0.062380281 0.241370874 0.37399304 0.030405819 0.007550765 5.06E-10 9.296084579 -0.180220514 DSTLIMQLLR ddPTM_HeLa_CUDC101_4h_R1 1 DSTLIMQLLR 10 0 P61981;P27348;P31946-2;P31946;P63104;E7EX29;B7Z2E6;H0YB80;B0AZS6;P63104-2;P31947-2;P31947;P62258;P62258-2;K7EM20;Q04917 P61981;P27348;P31946-2;P63104;P31947-2;P62258;Q04917 YWHAG;YWHAQ;YWHAB;YWHAZ;SFN;YWHAE;YWHAH "14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta;14-3-3 protein sigma;14-3-3 protein epsilon;14-3-3 protein eta" 0 0 156.51 0.00045882 46425000 4394.3 2997.3 2098.5 2911.4 2621.7 2788.2 2322 1941.9 2347 2354.5 FALSE FALSE TRUE 3879.206815 3089.64326 2211.951258 3030.139476 2428.302414 2735.01973 2411.560318 2162.958047 2250.255667 2340.495329 1.657429847 1.320080934 0.945078262 1.294657348 1.037516454 1.16856449 1.030363226 0.924145423 0.961444203 1 11.19259817 -6.784398346 23.57520807 1.319849601 1.078730814 0.078471109 0.211000182 167.0039192 171485.6944 0.042075773 0.055325435 1.64E-07 6.784398346 -0.241118788 LLSSSLTADCSLRS(ph)PSGR ddPTM_HeLa_CUDC101_4h_R1 1 LLSSSLTADCSLRSPSGR 18 1 Q147X3;Q147X3-2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 LLSSSLTADCS(0.002)LRS(0.99)PS(0.009)GR 156.11 0.00020271 13422000 2520.4 2024.2 2012.5 2138.3 2288.9 2159 2116.2 1512 2096.6 1464.1 TRUE FALSE FALSE 2224.962533 2086.563203 2121.301837 2225.509117 2120.052407 2117.820672 2197.822543 1684.119968 2010.177261 1455.391468 1.528772555 1.433678325 1.457547254 1.529148113 1.45668877 1.455155344 1.510124658 1.157159435 1.381193517 1 10.50719154 -9.296004945 0.89820076 0.984763236 1.452289346 0.140498668 0.153628088 0.244681392 0.335536525 0.078357561 0.018517485 5.06E-10 9.296004945 0.46752611 DSYDSYATHNE ddPTM_HeLa_CUDC101_4h_R1 2 DSYDSYATHNE 11 0 Q14011 Q14011 CIRBP Cold-inducible RNA-binding protein 0 0 ; ; 143.37 0.0068126 12873900 6365.8 5411.8 4880.1 4410.5 6577.4 4993 5237.6 5446.3 5842.8 6147.2 FALSE FALSE TRUE 5619.610574 5578.531143 5143.932967 4590.379254 6092.198306 4897.766844 5439.615986 6066.284777 5601.957311 6110.636181 0.91964411 0.912921499 0.841799907 0.75121135 0.996982659 0.801515047 0.890188161 0.992741934 0.91675517 1 12.57710687 -8.212148665 0.750796604 0.990896723 0.879053106 0.101846572 0.075878763 0.550943309 0.673090386 0.027432464 0.016760243 6.14E-09 8.212148665 -0.111843617 DSYESYGNSR ddPTM_HeLa_CUDC101_4h_R1 4 DSYESYGNSR 10 0 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 0 ;;; ;;; 205.83 4.56E-23 151533000 7065.2 6945.2 7032.8 7344.7 8020.6 6980.6 6199.1 6831.4 6999.9 6903.6 FALSE FALSE TRUE 6237.027966 7159.17338 7413.014441 7644.248613 7428.936317 6847.456685 6438.201364 7609.058963 6711.361159 6862.53708 0.908851623 1.043225457 1.080214847 1.11390999 1.082534962 0.997802504 0.93816635 1.1087822 0.977970841 1 12.74452632 -7.176814805 7.579027891 0.957017423 1.050595683 0.364851102 0.054183076 0.245888148 19.64301554 0.010191288 0.012493481 6.66E-08 7.176814805 0.093578259 DSYGGPPRR ddPTM_HeLa_CUDC101_4h_R1 1 DSYGGPPRR 9 1 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 0 84.743 0.037731 1733800 756.1 680 740.79 541.01 691.79 476.71 625.9 622.13 742.35 781.23 FALSE FALSE TRUE 667.4711042 700.949994 780.8393482 563.0747262 640.7580299 467.617551 650.0411727 692.9507645 711.7500188 776.5832092 0.859497213 0.902607712 1.005480596 0.725066831 0.825099001 0.602147388 0.83705283 0.892307168 0.916514818 1 9.600996704 -6.256281065 24.99184062 0.93404142 0.772739935 0.482841489 0.082978723 316.1725059 1531842.991 0.013606072 0.022135026 5.54E-07 6.256281065 -0.161301486 DSYLILETLPTEYDSR ddPTM_HeLa_CUDC101_4h_R1 2 DSYLILETLPTEYDSR 16 0 E9PM69;P17980;E9PMD8;E9PLG2;E9PKD5;E9PN50;R4GNH3 E9PM69;E9PN50 PSMC3 26S protease regulatory subunit 6A 0 0 ; ; 208.08 1.07E-22 10912300 4863.8 4078.6 3653.7 3670.85 4422.2 4114.9 3958.12 3931.2 4721.3 4619.6 FALSE FALSE TRUE 4293.672737 4204.256832 3851.230074 3820.56313 4095.983116 4036.415138 4110.786014 4378.711918 4526.686016 4592.122414 0.935008336 0.91553675 0.83866015 0.831981987 0.891958608 0.878986833 0.89518215 0.953526828 0.985750293 1 12.16494539 -7.846225156 0.885030437 0.986847981 0.882086285 0.606639507 0.033775571 0.249613631 0.419040606 0.010295147 0.008681883 1.42E-08 7.846225156 -0.104761696 TCEERPAEDGS(ph)DEEDPDSMEAPTR ddPTM_HeLa_CUDC101_4h_R1 3 TCEERPAEDGSDEEDPDSMEAPTR 24 1 D6RGJ8;Q9H6Y2 D6RGJ8 WDR55 WD repeat-containing protein 55 1 0 T(0.004)CEERPAEDGS(0.993)DEEDPDS(0.002)MEAPT(0.002)R;TCEERPAEDGS(1)DEEDPDSMEAPTR;TCEERPAEDGS(0.996)DEEDPDS(0.003)MEAPTR ;; 105.75 7.03E-07 321399000 9012 7138.6 7238.1 7346.7 7345.8 7046 7060 7689.3 7867.7 4689.6 TRUE FALSE FALSE 7955.627021 7358.531805 7629.41358 7646.330181 6803.914969 6911.609289 7332.306565 8564.618831 7543.390076 4661.706051 1.706591307 1.578506179 1.636614042 1.640242885 1.459533247 1.482635159 1.572880505 1.837228418 1.618160818 1 12.18664232 -9.295860675 0.86954613 0.973856575 1.610254685 0 0.214646309 0.210838879 0.267103813 0.09064138 0.020750482 5.06E-10 9.295860675 0.63639811 ETEEQDS(ph)DSAEQGDPAGEGKEVLCDFCLDDTRR ddPTM_HeLa_CUDC101_4h_R1 1 ETEEQDSDSAEQGDPAGEGKEVLCDFCLDDTRR 33 2 H0Y626;O95361 H0Y626 TRIM16 Tripartite motif-containing protein 16 1 0 ET(0.009)EEQDS(0.717)DS(0.267)AEQGDPAGEGKEVLCDFCLDDT(0.007)RR 48.546 0.0085564 69318000 1782.2 1394.4 1509.5 1165.7 1517.4 1567.6 1444.1 1569 1511.1 840.37 TRUE FALSE FALSE 1573.293218 1437.359811 1591.108136 1213.242285 1405.464425 1537.700642 1499.799421 1747.608618 1448.811818 835.3714419 1.883345706 1.720623592 1.904671451 1.452338713 1.68244251 1.84073882 1.795368318 2.09201384 1.734332473 1 9.706274014 -9.295697237 0.768129573 0.936523349 1.793659362 0.067082931 0.274929005 0.290642848 0.2712686 0.158752519 0.032243627 5.06E-10 9.295697237 0.857136014 DSYVGDEAQSK ddPTM_HeLa_CUDC101_4h_R1 4 DSYVGDEAQSK 11 0 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;C9JUM1;C9JZR7;C9JTX5;P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65 P60709;P63267;P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;; ;;; 178.46 2.06E-12 532621000 13851.14 11661.79 11479.88 11291.44 11393.82 11292.92 10631.26 11601.87 11568.28 13295.77 FALSE FALSE TRUE 12227.53037 12021.07593 12100.51704 11751.95373 10553.3206 11077.52637 11041.31126 12922.57998 11091.4306 13216.68617 0.925158562 0.90953782 0.915548488 0.889175515 0.798484617 0.838147038 0.835406933 0.977747358 0.839199059 1 13.69007287 -7.782143597 0.478003427 0.99739533 0.860697976 0 0.066545906 0.497246066 0.283992539 0.02564882 0.018905924 1.65E-08 7.782143597 -0.136697353 DSYVGDEAQSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 DSYVGDEAQSKR 12 1 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;C9JUM1;C9JZR7;C9JTX5;P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65 P60709;P63267;P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 1 ; DSYVGDEAQSK(1)R;DSYVGDEAQSK(1)R 191.33 2.51E-08 80588000 7920.6 3948.3 3893.5 3456.6 9068.2 6840 8808.4 8115.3 7538.9 4438.4 FALSE TRUE FALSE 6992.159275 4069.942443 4103.994387 3597.575089 8399.256952 6709.538396 9148.142939 9039.112949 7228.143351 4412.000199 1.584804841 0.922471047 0.930189076 0.815406828 1.903729958 1.520747528 2.073468387 2.048756242 1.63829171 1 12.10721714 -5.741556841 24.95481232 1.195486425 1.87388047 0.597580983 0.295169771 150.9846889 189501.627 0.046867749 0.093635689 1.81E-06 5.741556841 0.678394046 DSYVGDEAQSKR ddPTM_HeLa_CUDC101_4h_R1 3 DSYVGDEAQSKR 12 1 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;C9JUM1;C9JZR7;C9JTX5;P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65 P60709;P63267;P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;; ;; 126.34 0.0024021 357795000 7332.5 7232.1 7474.1 7460.6 8718.4 6760.8 7040.5 8491.3 7424.8 6598.5 FALSE FALSE TRUE 6472.995465 7454.912429 7878.172454 7764.875515 8075.261002 6631.849004 7312.054443 9457.915269 7118.746601 6559.251829 0.986849664 1.136549202 1.201077906 1.183805062 1.231125319 1.011067905 1.114769586 1.441919828 1.085298566 1 12.67931555 -7.155968332 3.3783777 0.993383543 1.185283845 0.332704085 0.106012995 0.17127027 3.672569345 0.01673262 0.020610663 6.98E-08 7.155968332 0.191900303 RREEGPPPPS(ph)PDGASSDAEPEPPSGR ddPTM_HeLa_CUDC101_4h_R1 1 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 Q9NTJ3;C9JWF0;C9IYK2;C9JJ64;C9JR83;E9PD53;Q9NTJ3-2;F8WCB7 Q9NTJ3 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 0 RREEGPPPPS(0.747)PDGAS(0.179)S(0.075)DAEPEPPSGR 60.33 0.001801 17520000 823.02 670.82 762.13 692.14 929.89 996.91 548.19 637.15 986.01 928.57 TRUE FALSE FALSE 726.5468432 691.4871691 803.3330531 720.3684609 861.2938673 977.8956027 569.3338719 709.6805806 945.3662505 923.0468243 0.787118079 0.749135527 0.870305852 0.780424613 0.933098782 1.059421447 0.616798473 0.768845699 1.024180167 1 9.850260025 -9.294725986 0.983658716 1.001680046 0.821882155 0.313483182 0.112132887 0.629419849 1.075831462 0.080268674 0.020784557 5.07E-10 9.294725986 -0.179797891 SPTAALNES(ph)LVECPK ddPTM_HeLa_CUDC101_4h_R1 2 SPTAALNESLVECPK 15 0 Q53EZ4 Q53EZ4 CEP55 Centrosomal protein of 55 kDa 1 0 S(0.001)PT(0.001)AALNES(0.998)LVECPK;SPT(0.166)AALNES(0.834)LVECPK ; 137.73 0.00049754 34588000 4701.7 3564.8 3718.4 3692.3 3764.9 3890.6 3726.4 4300 3815.2 1537.78 TRUE FALSE FALSE 4150.573853 3674.627263 3919.427952 3842.887953 3487.170828 3816.393287 3870.128496 4789.494619 3657.935841 1528.633216 2.715218935 2.403864592 2.564008102 2.51393723 2.281234498 2.496604972 2.531757426 3.133187588 2.392945412 1 10.57802657 -9.294412525 0.714645197 0.837929955 2.580402294 0.140040627 0.479853624 0.224583055 0.175540097 0.240126699 0.045722462 5.08E-10 9.294412525 1.742472339 LADVFRVGMRCMS(ph)VK ddPTM_HeLa_CUDC101_4h_R1 1 LADVFRVGMRCMSVK 15 2 A0A087WYC2 A0A087WYC2 INTS7 1 0 LADVFRVGMRCMS(1)VK 64.842 0.0031603 0 1280.9 1152.5 1136.6 1121.4 1325.9 1352.1 997.71 1084.4 1488.1 1528.5 TRUE FALSE FALSE 1130.754844 1188.007159 1198.048034 1167.135539 1228.090999 1326.310945 1036.192009 1207.843713 1426.759888 1519.408414 0.744207307 0.781887969 0.78849638 0.768151294 0.808269184 0.872912729 0.681970693 0.794943415 0.93902329 1 10.569294 -9.293978842 0.865116131 1.009714417 0.778493952 0.699400684 0.049045173 0.2466676 0.30887547 0.038417465 0.008773995 5.08E-10 9.293978842 -0.231220465 SQS(ph)PVHLR ddPTM_HeLa_CUDC101_4h_R1 4 SQSPVHLR 8 0 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 1 0 S(0.008)QS(0.992)PVHLR;S(0.008)QS(0.992)PVHLR;S(0.011)QS(0.989)PVHLR;S(0.001)QS(0.999)PVHLR ;;; 103.21 0.010198 287891000 13537.9 11306.4 11699.6 10805.7 13397.2 11938.3 11102.2 11038.4 12976.7 11305.6 TRUE FALSE FALSE 11951.00788 11654.73678 12332.11577 11246.40315 12408.91525 11710.59682 11530.41557 12294.96684 12441.79493 11238.35379 1.063412677 1.037050177 1.097324039 1.00071624 1.104157733 1.042020659 1.025987951 1.09401849 1.107083401 1 13.4561431 -9.293528386 0.74349447 0.994874499 1.057533044 0 0.045976241 0.746227599 0.643360586 0.029287731 0.005788076 5.09E-10 9.293528386 0.062658545 ELSNSPLRENS(ph)FGSPLEFR ddPTM_HeLa_CUDC101_4h_R1 1 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ELS(0.001)NS(0.308)PLRENS(0.407)FGS(0.284)PLEFR 111.72 0.0013258 365370000 1770.3 1451.5 1574.5 1548.4 1361.2 1387.5 1459.9 1391 1433.8 1186.2 TRUE FALSE FALSE 1562.788118 1496.218995 1659.622233 1611.550445 1260.786988 1361.035749 1516.208832 1549.345817 1374.698157 1179.14443 1.325357673 1.268902229 1.407480026 1.366711663 1.069238811 1.154257032 1.285855061 1.313957628 1.165843744 1 10.20352472 -9.293178429 0.963601055 0.996141527 1.273539059 0.300997619 0.105499748 0.377214896 0.614037652 0.073611645 0.018718888 5.09E-10 9.293178429 0.277397532 DTAAWTVGR ddPTM_HeLa_CUDC101_4h_R1 1 DTAAWTVGR 9 0 Q14974;Q14974-2;J3KTM9;J3QKQ5 Q14974 KPNB1 Importin subunit beta-1 0 0 118.33 0.03378 9648700 1449.2 1550.4 1486.7 1669.3 2966.7 2258.9 2039.9 1765 2220.6 959.63 FALSE FALSE TRUE 1279.326973 1598.165986 1567.075499 1737.381269 2747.852451 2215.815246 2118.579626 1965.920466 2129.065928 953.9220781 1.34112314 1.675363243 1.642770972 1.821303133 2.880583765 2.322847219 2.220914763 2.060881607 2.231907592 1 9.897727613 -6.725284949 0.769772514 1.105561754 2.35632221 0.266993976 0.438285249 0.194989717 0.232909355 0.058944699 0.099841316 1.88E-07 6.725284949 1.250760456 SHSGT(ph)SPDNTAPPPPPPRPQPSHSR ddPTM_HeLa_CUDC101_4h_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 S(0.148)HS(0.148)GT(0.352)S(0.352)PDNTAPPPPPPRPQPSHSR 70.407 0.00031167 28602000 1541.9 1444 1394.9 1056.8 1706.8 1549 1428.6 1012.3 1872.4 1929 TRUE FALSE FALSE 1361.160819 1488.487928 1470.312513 1099.900872 1580.892764 1519.455406 1483.701581 1127.53614 1795.218879 1917.526222 0.709852519 0.776254276 0.766775701 0.573604084 0.824443883 0.792403978 0.77375817 0.588016021 0.936216078 1 10.90503059 -9.293049522 0.664631914 1.03451689 0.725702637 0.581506306 0.081622099 0.511737762 0.335038157 0.093153761 0.016692171 5.09E-10 9.293049522 -0.308814253 DTDFEHR ddPTM_HeLa_CUDC101_4h_R1 2 DTDFEHR 7 0 P17858;P17858-2 P17858 PFKL "ATP-dependent 6-phosphofructokinase, liver type" 0 0 ; ; 126.28 0.00026204 4536900 13898.6 6779.3 14891.8 14948.3 10541.4 9411.8 11642.1 5119 14292.2 16264.2 FALSE FALSE TRUE 12269.42718 6988.162198 15696.89575 15557.95629 9763.781923 9232.285596 12091.1397 5701.726268 13703.06947 16167.45982 0.758896408 0.43223625 0.970894373 0.9623006 0.603915645 0.571041196 0.747868857 0.352666797 0.847570962 1 13.9808054 -9.97917149 0.059829167 1.893144464 1.33E-13 0.291871851 0.18278318 101.3130758 1.155380601 25.52272517 12.60512755 1.05E-10 9.97917149 -1.893144464 DTDSEEEIR ddPTM_HeLa_CUDC101_4h_R1 4 DTDSEEEIR 9 0 P0DP25;P0DP24;P0DP23;E7EMB3;G3V361;A0A590UJI2;Q96HY3;A0A590UJC0;G3V226 P0DP25 CALM2;CALM1 0 0 ;;; ;;; 140.35 0.010061 159104000 13196.5 10660.5 12173.3 9841.5 9177.7 9278.7 9144.3 9363.3 9672.4 15602.3 FALSE FALSE TRUE 11649.62627 10988.93737 12831.42542 10242.87891 8500.679356 9101.724257 9496.998714 10429.18022 9273.699578 15509.49683 0.751128577 0.708529586 0.827326996 0.660426255 0.548095109 0.586848455 0.612334418 0.672438335 0.597936844 1 13.92086426 -8.906370731 0.226592332 1.184673092 0.554416078 0 0.138612594 1.51695613 0.141839637 0.295771936 0.08394621 1.24E-09 8.906370731 -0.630257014 DTDSEEEIREAFR ddPTM_HeLa_CUDC101_4h_R1 4 DTDSEEEIREAFR 13 1 P0DP25;P0DP24;P0DP23;E7EMB3;G3V361;A0A590UJI2;Q96HY3;A0A590UJC0;G3V226 P0DP25 CALM2;CALM1 0 0 ;;; ;;; 141.89 0.00085876 794075000 11061.9 10131 10121.1 8215.3 10126.2 9486.8 9761.4 10741.9 9907.2 11941.2 FALSE FALSE TRUE 9765.240851 10443.1241 10668.27728 8550.355444 9379.2104 9305.855096 10137.90047 11964.71448 9498.821023 11870.17321 0.82267046 0.879778577 0.898746555 0.720322719 0.790149413 0.783969613 0.854065083 1.007964607 0.800225983 1 13.53505337 -9.302560696 0.703986867 1.01769611 0.837120461 0 0.096046427 0.760458137 0.570212172 0.083751146 0.015557312 4.98E-10 9.302560696 -0.180575649 (ac)MS(ph)PTPPLFSLPEAR ddPTM_HeLa_CUDC101_4h_R1 1 MSPTPPLFSLPEAR 14 0 A0A087WWS1;Q96FV9;J3KRD7;J3QQZ3;J3KT14;Q96FV9-2 A0A087WWS1 THOC1 THO complex subunit 1 1 0 MS(0.957)PT(0.043)PPLFSLPEAR 89.805 0.0028545 0 276.88 296.81 218.8 127.01 279.57 281.17 247.88 134.47 281.77 193.11 TRUE FALSE FALSE 244.4245461 305.9543643 230.6289898 132.1900168 258.9466781 275.8071507 257.4408146 149.7775213 270.1553213 191.9613731 1.273300676 1.593832964 1.201434362 0.68862821 1.348951999 1.436784631 1.341107382 0.780248228 1.407342097 1 7.584672228 -9.292721565 1.132779142 1.005476404 1.221875798 0 0.292051382 0.982363787 2.339420466 0.157609231 0.046834982 5.10E-10 9.292721565 0.216399395 S(ph)PSGGAAGPLLTPSQSLDGSR ddPTM_HeLa_CUDC101_4h_R1 4 SPSGGAAGPLLTPSQSLDGSR 21 0 Q96CX2 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 1 0 S(0.986)PS(0.014)GGAAGPLLTPSQSLDGSR;S(0.992)PS(0.008)GGAAGPLLTPSQSLDGSR;S(0.881)PS(0.119)GGAAGPLLTPSQSLDGSR;S(0.972)PS(0.028)GGAAGPLLTPSQSLDGSR ;;; 205.36 4.75E-20 204246000 1255.74 1213.61 895.37 1220.15 1303.54 1273.2 1123.95 857.02 1498.54 1460.04 TRUE FALSE FALSE 1108.544061 1250.999886 943.7764105 1269.912991 1207.380451 1248.915831 1167.301128 954.5796926 1436.769547 1451.355617 0.763799063 0.861952695 0.650272338 0.874984033 0.831898424 0.860516759 0.804283329 0.657715918 0.989950037 1 10.50318534 -9.292441972 0.801848873 1.013695106 0.790789648 0.542125757 0.075801186 0.466509736 0.484953289 0.067612246 0.014371699 5.10E-10 9.292441972 -0.222905457 DTGK(ac)TPVEPEVAIHR ddPTM_HeLa_CUDC101_4h_R1 2 DTGKTPVEPEVAIHR 15 1 E5RIP1;E5RJX2;P60866;P60866-2 E5RIP1 RPS20 40S ribosomal protein S20 0 1 ; DTGK(1)TPVEPEVAIHR;DTGK(1)TPVEPEVAIHR 176.43 2.90E-07 87110000 8323.3 8097 8706.1 8678.4 11298.2 11146.8 10447 9526.6 6956.6 6578.2 FALSE TRUE FALSE 7347.655391 8346.458973 9176.778101 9032.342663 10464.7543 10934.19336 10849.94429 10611.06964 6669.846004 6539.072574 1.123654052 1.276397972 1.40337609 1.381288028 1.600342277 1.672132132 1.659248183 1.622717827 1.019998773 1 12.67487032 -6.537638493 0.584050658 1.021053674 1.69624076 0.967416886 0.045004511 0.092746416 0.064219913 0.012187284 0.026085857 2.90E-07 6.537638493 0.675187086 DTGKTPVEPEVAIHR ddPTM_HeLa_CUDC101_4h_R1 2 DTGKTPVEPEVAIHR 15 1 E5RIP1;E5RJX2;P60866;P60866-2 E5RIP1 RPS20 40S ribosomal protein S20 0 0 ; ; 94.023 0.0047658 16113200 10448.8 10786.9 10880.6 10984.8 13306.6 11815 11576.9 13564.4 11214.4 10054.3 FALSE FALSE TRUE 9224.007503 11119.2316 11468.83815 11432.80762 12324.99863 11589.64856 12023.42491 15108.51647 10752.13769 9994.496576 0.922908666 1.112535436 1.147515341 1.143910305 1.233178533 1.159603035 1.203004555 1.51168359 1.07580583 1 13.28691818 -1 0.256423996 0.947692089 4.202725043 0.700195364 0.081517395 16.43886537 0.206393929 0.043472048 23.56251658 0.1 1 3.255032954 TS(ph)STCS(ph)NESLSVGGTSVTPR ddPTM_HeLa_CUDC101_4h_R1 1 TSSTCSNESLSVGGTSVTPR 20 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 2 0 T(0.36)S(0.429)S(0.177)T(0.095)CS(0.917)NES(0.016)LS(0.006)VGGTSVTPR 71.071 0.026535 7882400 1567.8 1354.4 1142.4 1362.5 1409.9 1422.5 1212 1106.4 1564.9 1016.4 TRUE FALSE FALSE 1384.024861 1396.127459 1204.1616 1418.068639 1305.894486 1395.368183 1258.747246 1232.348104 1500.39416 1010.354408 1.369840969 1.381819536 1.191820999 1.403535857 1.292511297 1.381068041 1.245847236 1.21971864 1.485017681 1 9.980645729 -9.291919229 0.925244026 0.992200969 1.314768757 0 0.164995627 0.240516132 0.355128004 0.053704298 0.013143519 5.11E-10 9.291919229 0.322567788 DTHDQLSEPSEVR ddPTM_HeLa_CUDC101_4h_R1 2 DTHDQLSEPSEVR 13 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 187.62 3.28E-19 50943000 7410.3 6138.8 5936.5 5900.2 7299 6343.2 6002.4 5907.3 6554.9 6774.5 FALSE FALSE TRUE 6541.675867 6327.929152 6257.445147 6140.835659 6760.567312 6222.214028 6233.914579 6579.763154 6284.704248 6734.204973 0.971410269 0.939669817 0.92920325 0.911887251 1.003914692 0.923971583 0.925709063 0.977066065 0.933251107 1 12.71729192 -7.77213824 1.158772351 0.992657511 0.943551539 0 0.032459889 0.30387192 0.852740212 0.006135483 0.005696324 1.69E-08 7.77213824 -0.049105973 SELCSS(ph)PLGK ddPTM_HeLa_CUDC101_4h_R1 3 SELCSSPLGK 10 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 SELCS(0.205)S(0.795)PLGK;SELCS(0.157)S(0.843)PLGK;SELCS(0.034)S(0.966)PLGK ;; 193.3 7.07E-15 523449000 29990 24081.4 23677.8 23525.5 25620.4 24485.6 23506.6 20592.8 23274 13310.7 TRUE FALSE FALSE 26474.61766 24823.31939 24957.89349 24484.97158 23730.43414 24018.57798 24413.25744 22937.00111 22314.63587 13231.52736 2.000873893 1.876073616 1.886244332 1.850502282 1.793476557 1.815253622 1.845082337 1.733511218 1.686474679 1 13.69169199 -9.291675302 0.902464521 0.97307233 1.857354927 0.312508815 0.217717417 0.111568439 0.155068508 0.067601775 0.016148064 5.11E-10 9.291675302 0.884282597 SEDESET(ph)EDEEEKSQEDQEQK ddPTM_HeLa_CUDC101_4h_R1 1 SEDESETEDEEEKSQEDQEQK 21 1 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 1 0 S(0.001)EDES(0.123)ET(0.843)EDEEEKS(0.033)QEDQEQK 57.238 0.0025141 0 842.23 795.3 728.85 715.97 752.18 778.76 832.16 767.19 685.76 1027.4 TRUE FALSE FALSE 743.5050761 819.8022503 768.2538357 745.1703513 696.69318 763.9064505 864.25669 854.5238085 657.4926825 1021.288979 0.72800656 0.802713304 0.752239426 0.729637122 0.682170467 0.747982663 0.846241081 0.836711084 0.643787112 1 9.996175427 -9.291061469 0.835073982 1.012626718 0.761915045 0 0.120172351 0.280816136 0.322847579 0.046632961 0.010330146 5.12E-10 9.291061469 -0.250711674 AVSETPAVPPVS(ph)EDEDDDDDDATPPPVIAPRPEHTK ddPTM_HeLa_CUDC101_4h_R1 2 AVSETPAVPPVSEDEDDDDDDATPPPVIAPRPEHTK 36 1 H0YCM0;E9PM17;B3KNX7;Q13153;Q13153-2 H0YCM0 PAK1 Non-specific serine/threonine protein kinase;Serine/threonine-protein kinase PAK 1 1 0 AVS(0.015)ET(0.057)PAVPPVS(0.928)EDEDDDDDDATPPPVIAPRPEHTK;AVS(0.002)ET(0.014)PAVPPVS(0.949)EDEDDDDDDAT(0.034)PPPVIAPRPEHTK ; 79.911 9.49E-08 109125000 16410.8 13955.9 13404.2 13176.4 13889.6 12902.4 12247.7 13939.1 14010.4 9898.9 TRUE FALSE FALSE 14487.1509 14385.86474 14128.8716 13713.79055 12864.99188 12656.30822 12720.09789 15525.8708 13432.88538 9840.020903 1.472268306 1.461975018 1.435857885 1.39367494 1.307415097 1.286207452 1.292690129 1.577829047 1.365127728 1 13.26444566 -9.290921274 0.952707273 0.993333782 1.398999802 0.103121124 0.140373608 0.23989192 0.3803047 0.068105785 0.017179559 5.12E-10 9.290921274 0.405666021 SPDASSAFSPAS(ph)PATPNGTK ddPTM_HeLa_CUDC101_4h_R1 1 SPDASSAFSPASPATPNGTK 20 0 Q53GS7-2;Q53GS7 Q53GS7-2 GLE1 Nucleoporin GLE1 1 0 SPDASSAFS(0.09)PAS(0.907)PAT(0.003)PNGTK 166.21 1.98E-06 23004000 4144.2 3607.3 3394.7 3646 3743.1 3621.3 3591.8 3811.5 3869.4 3950.2 TRUE FALSE FALSE 3658.423158 3718.436637 3578.22775 3794.699639 3466.97897 3552.229736 3730.336929 4245.385753 3709.901694 3926.704035 0.931677846 0.946961269 0.911254762 0.966382902 0.882923424 0.904633938 0.949991875 1.08115756 0.944787705 1 11.93910315 -9.29088639 0.953074152 1.00094109 0.942349915 0 0.053621357 0.89482874 1.419923215 0.03669688 0.009260674 5.12E-10 9.29088639 -0.058591176 LESLSETPGPSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 LESLSETPGPSSPR 14 0 A0A2R8YFR7;Q12774;A0A2R8YF49;H0Y895;Q12774-2;C9J591 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 LESLS(0.013)ET(0.192)PGPS(0.072)S(0.723)PR;LESLSETPGPS(0.126)S(0.874)PR;LESLSETPGPS(0.001)S(0.999)PR;LESLSETPGPS(0.01)S(0.99)PR ;;; 222.88 9.72E-33 233545000 14331 12947 11894.7 13205.4 13472.2 12907.5 12764.9 12816.4 15115.6 15863.3 TRUE FALSE FALSE 12651.1419 13345.88172 12537.76346 13743.97329 12478.38265 12661.31094 13257.24647 14275.36717 14492.52857 15768.94439 0.802282106 0.846339577 0.795092122 0.871584867 0.791326441 0.802926983 0.840718703 0.905283627 0.919055088 1 13.94479847 -9.290495274 0.867852543 1.007185732 0.828718466 0.567509909 0.042255085 0.239436878 0.30263877 0.028787609 0.006627442 5.12E-10 9.290495274 -0.178467267 DTILDWEDSLPDRDLALADEASR ddPTM_HeLa_CUDC101_4h_R1 1 DTILDWEDSLPDRDLALADEASR 23 1 Q8N6T7;M0QXA0;M0QZ09;M0R1N9;M0R1F6 Q8N6T7 SIRT6 NAD-dependent protein deacetylase sirtuin-6 0 0 70.987 0.0024026 1828500 540.36 494.08 413.64 488.22 675.03 587.94 448.86 753.99 435.93 533.35 FALSE FALSE TRUE 477.0198199 509.3020192 436.0026296 508.1317219 625.2343817 576.7260241 466.1726806 839.8211739 417.9607809 530.1776105 0.899735882 0.960625287 0.822370883 0.958417918 1.179292315 1.087797773 0.879276437 1.584037419 0.788341063 1 9.050331936 -4.256615975 24.91334752 0.964451529 1.584037685 0.740331615 0.111951034 172.708605 892024.5404 0.014107384 0.154733762 5.54E-05 4.256615975 0.619586156 DTLENTIGHR ddPTM_HeLa_CUDC101_4h_R1 1 DTLENTIGHR 10 0 H3BS70;Q96DC0;P42126-2;P42126 H3BS70 ECI1;DCI "Enoyl-CoA delta isomerase 1, mitochondrial" 0 0 152.04 0.00032488 6727400 3017.2 2461.3 2074.4 2734.4 2819.4 2668 2304.5 2394.8 2595.9 2491.5 FALSE FALSE TRUE 2663.52839 2537.129736 2186.548339 2845.920651 2611.418479 2617.112345 2393.385337 2667.414352 2488.895903 2476.680447 1.075442895 1.024407383 0.882854444 1.149086736 1.054402671 1.056701662 0.966368245 1.077011915 1.004932189 1 11.27419202 -9.728669194 1.65333162 1.00001929 1.04043582 0.034070118 0.067391501 1.092574499 5.400510241 0.047196148 0.010307588 1.87E-10 9.728669194 0.04041653 DTLVQGLNEAGDDLEAVAK ddPTM_HeLa_CUDC101_4h_R1 2 DTLVQGLNEAGDDLEAVAK 19 0 E9PFE3;C9JF98;F8WDX8;E7EMS9;Q75MG1;E7ETZ4;Q9Y6E2-2;Q9Y6E2 E9PFE3 BZW2 Basic leucine zipper and W2 domain-containing protein 2 0 0 ; ; 143.93 0.00030756 5027900 2907.8 2381 2351.99 2242.3 2513.9 2548.5 2216.45 2271.97 2762.6 2431.7 FALSE FALSE TRUE 2566.952092 2454.355788 2479.145694 2333.750686 2328.454605 2499.891609 2301.939219 2530.601881 2648.724459 2417.23614 1.061936833 1.015356236 1.025611711 0.965462433 0.963271468 1.034194205 0.952302169 1.04689891 1.095765703 1 11.2391427 -6.381077252 7.686744217 1.028613142 0.990947371 0.255018339 0.038113535 0.324016132 19.26893628 0.005245015 0.008020073 4.16E-07 6.381077252 -0.037665772 VTDMADYT(ph)YSTVPRR ddPTM_HeLa_CUDC101_4h_R1 1 VTDMADYTYSTVPRR 15 1 A0A1B0GW36;Q9H0J4-3;Q9H0J4 A0A1B0GW36 QRICH2 Glutamine-rich protein 2 1 0 VTDMADY(0.082)T(0.689)Y(0.156)S(0.037)T(0.037)VPRR 84.734 0.012239 960720000 6493.3 5176.7 4572.8 5499.2 3765.1 4961.9 4951.7 5042.3 4018.1 1178.7 TRUE FALSE FALSE 5732.165217 5336.187991 4820.0194 5723.481146 3487.356074 4867.260025 5142.688728 5616.29505 3852.472217 1171.68904 4.892223979 4.554269784 4.113736013 4.884812395 2.976349488 4.154054411 4.389124206 4.79333241 3.287964712 1 10.19437402 -9.289554525 0.898196668 0.892149409 4.343232738 0.427506592 0.868232654 0.190257704 0.261646745 0.448673587 0.106990803 5.13E-10 9.289554525 3.451083329 SEDVTPMEVTAEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 SEDVTPMEVTAEKR 14 1 O94916-2;O94916;O94916-4;O94916-5 O94916-2 NFAT5 Nuclear factor of activated T-cells 5 0 1 ; SEDVTPMEVTAEK(1)R;SEDVTPMEVTAEK(1)R 272.1 3.66E-70 2427600 722.51 922.97 889.48 769 505.04 384.95 245.61 337.7 627.32 911.17 FALSE TRUE FALSE 637.8184731 951.4056117 937.5679793 800.3631439 467.7842054 377.6077201 255.08326 376.142403 601.4616041 905.7503203 0.704187963 1.050406045 1.03512851 0.883646548 0.516460436 0.416900454 0.281626464 0.415282661 0.664047907 1 9.822969601 -5.64334104 2.934277716 0.890138752 0.369253662 0.783686375 0.125658362 0.096873901 1.673196371 0.020624689 0.044523256 2.27E-06 5.64334104 -0.520885089 down SCMLTGT(ph)PESVQSAK ddPTM_HeLa_CUDC101_4h_R1 2 SCMLTGTPESVQSAK 15 0 Q96AE4;E9PEB5;Q96AE4-2;C9JSZ1 Q96AE4 FUBP1 Far upstream element-binding protein 1 1 0 SCMLT(0.303)GT(0.693)PES(0.004)VQSAK;S(0.002)CMLT(0.388)GT(0.61)PESVQSAK ; 210.08 7.60E-23 21307000 6596.6 5307.5 4956.5 5218.7 6016.7 5480.5 5251.4 5039.1 5935.8 3206.5 TRUE FALSE FALSE 5823.356548 5471.017784 5224.463383 5431.541143 5572.860028 5375.968594 5453.948257 5612.730775 5691.123812 3187.427595 1.826976888 1.716436725 1.639084568 1.704051615 1.748387959 1.686616694 1.711081458 1.760896713 1.785491165 1 11.63817686 -9.289400869 0.828344286 0.959774787 1.727306042 0 0.245687039 0.108582653 0.122473281 0.054967472 0.01210902 5.14E-10 9.289400869 0.767531255 S(ph)WSTATSPLGGERPFR ddPTM_HeLa_CUDC101_4h_R1 2 SWSTATSPLGGERPFR 16 1 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0;H0Y8P3;Q9UPQ0-2;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.967)WS(0.027)T(0.006)ATSPLGGERPFR;S(0.999)WS(0.001)TATSPLGGERPFR ; 158.93 0.00036005 58982000 3426.18 2861.69 2831.85 2891.82 3395.87 3329.45 2711.27 2428.49 3099.28 2807.7 TRUE FALSE FALSE 3024.568374 2949.855277 2984.948377 3009.760919 3145.363436 3265.946288 2815.844592 2704.939485 2971.526367 2790.999676 1.083686394 1.056917098 1.069490765 1.078380963 1.126966607 1.170170788 1.008901798 0.969165102 1.064681731 1 11.44656624 -9.289386437 0.795236191 0.995031245 1.074338627 0.012290846 0.056240997 1.00239509 1.022537292 0.051435226 0.010893215 5.14E-10 9.289386437 0.079307382 EGDVLTLLES(ph)EREAR ddPTM_HeLa_CUDC101_4h_R1 2 EGDVLTLLESEREAR 15 1 P62857 P62857 RPS28 40S ribosomal protein S28 1 0 EGDVLTLLES(1)EREAR;EGDVLTLLES(1)EREAR ; 99.392 0.0034305 5908100 2280.6 2115.11 1973.87 1745.02 2477.12 2067.3 2064.88 1734.93 2559.7 2665.6 TRUE FALSE FALSE 2013.271525 2180.274032 2080.583383 1816.189458 2294.387793 2027.869697 2144.523113 1932.427418 2454.188083 2649.744893 0.759798247 0.822824129 0.785201394 0.685420496 0.865890071 0.765307522 0.809331917 0.7292881 0.926197873 1 11.37163775 -9.289256471 0.696193228 1.024407069 0.77646499 0.660597443 0.052047482 0.334735031 0.246043952 0.050150258 0.009398021 5.14E-10 9.289256471 -0.247942079 LAAVDATVNQVLAS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 LAAVDATVNQVLASR 15 0 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 Q15084-3 PDIA6 Protein disulfide-isomerase A6 1 0 LAAVDAT(0.002)VNQVLAS(0.998)R 101.39 0.0052501 5689900 541.38 545.75 550.6 359.21 381.91 502.61 458.49 531.91 303.52 999.86 TRUE FALSE FALSE 477.9202571 562.5639106 580.3671015 373.8601364 353.7372602 493.0235517 476.1741129 592.4604843 291.0087771 993.9127883 0.480847276 0.566009329 0.583921556 0.37614984 0.355903721 0.496043071 0.479090438 0.596089004 0.292791058 1 9.956975457 -9.289193277 0.556254227 1.098495729 0.472385681 0 0.233461149 0.365039728 0.156336081 0.121195206 0.01920727 5.14E-10 9.289193277 -0.626110048 DTQSGSLLFIGR ddPTM_HeLa_CUDC101_4h_R1 1 DTQSGSLLFIGR 12 0 P50454;E9PKH2;H0YEP8 P50454 SERPINH1 Serpin H1 0 0 140.78 0.0029684 418400 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 RRGDS(ph)ESEEDEQDSEEVR ddPTM_HeLa_CUDC101_4h_R1 1 RRGDSESEEDEQDSEEVR 18 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 0 RRGDS(0.513)ES(0.486)EEDEQDS(0.001)EEVR 65.105 0.02419 5487200 338.81 339.96 315.46 243.41 387.45 355.99 238.15 363.01 284.35 507.05 TRUE FALSE FALSE 299.0952054 350.4337646 332.5147218 253.3373119 358.8685854 349.2000839 247.3355253 404.3335911 272.6289726 504.034044 0.593402785 0.695258125 0.65970687 0.502619446 0.711992751 0.692810511 0.490711943 0.802195002 0.540893965 1 8.977377371 -9.288726873 0.776647343 1.027069671 0.635393936 0 0.16813726 0.324196862 0.312071785 0.081198929 0.016828865 5.14E-10 9.288726873 -0.391675735 DTS(ph)SVAVNLPVPS(ph)GVAFPAVFLRSR ddPTM_HeLa_CUDC101_4h_R1 1 DTSSVAVNLPVPSGVAFPAVFLRSR 25 1 H3BPM3;H3BRE8;Q9BWH6-2;Q9BWH6 H3BPM3 RPAP1 RNA polymerase II-associated protein 1 2 0 DT(0.444)S(0.449)S(0.107)VAVNLPVPS(0.853)GVAFPAVFLRS(0.147)R 45.836 0.036298 30026000 5316 4243.4 4353.8 4130.7 4953.8 4281.2 4034.9 4763.5 4896.9 3061.3 TRUE FALSE FALSE 4692.866539 4374.134124 4589.179598 4299.1678 4588.368043 4199.543243 4190.527445 5305.757585 4695.047709 3043.091251 1.542137961 1.437398278 1.508065062 1.412763353 1.507798375 1.380025407 1.377062697 1.743542059 1.542854723 1 11.57132188 -9.287679332 0.791779226 0.966940179 1.483907313 0 0.195214598 0.272575488 0.275319865 0.090932509 0.019223986 5.16E-10 9.287679332 0.516967133 S(ph)ATPVNCEQPDILVSSTPINEGQTVLDK ddPTM_HeLa_CUDC101_4h_R1 1 SATPVNCEQPDILVSSTPINEGQTVLDK 28 0 F8WF45;A0A2R8Y7M0;P82094;P82094-2 F8WF45 TMF1 TATA element modulatory factor 1 0 S(0.5)AT(0.5)PVNCEQPDILVSSTPINEGQTVLDK 112.26 1.35E-10 23545000 2541 1922.9 2186.4 2242.2 2708.8 2224.1 1855.5 1888.6 2325.4 1746 TRUE FALSE FALSE 2243.147832 1982.14227 2304.603397 2333.646608 2508.977221 2181.678998 1927.067257 2103.59059 2229.546028 1735.614714 1.292422687 1.142040485 1.327831216 1.34456489 1.445584207 1.257006512 1.110308204 1.212014725 1.284585807 1 10.76123101 -9.286842981 0.685098045 0.969333346 1.27259082 0 0.127577343 0.627580222 0.444077222 0.113931851 0.021125728 5.17E-10 9.286842981 0.303257473 LTGSTSS(ph)LNK ddPTM_HeLa_CUDC101_4h_R1 3 LTGSTSSLNK 10 0 Q9NV70-2;Q9NV70 Q9NV70-2 EXOC1 Exocyst complex component 1 1 0 LTGS(0.019)T(0.074)S(0.074)S(0.833)LNK;LTGS(0.015)T(0.232)S(0.232)S(0.522)LNK;LTGS(0.082)T(0.196)S(0.162)S(0.56)LNK ;; 185.99 2.87E-11 122912000 13571.1 11726.6 10844.7 11539.4 12624.9 11648.8 12025.2 10992.1 11345.9 10624.6 TRUE FALSE FALSE 11980.31623 12087.88265 11430.99729 12010.02661 11693.58628 11426.61855 12489.01599 12243.39623 10878.2172 10561.40441 1.134348783 1.144533642 1.08233686 1.137161891 1.107199936 1.081922262 1.182514703 1.159258349 1.029997222 1 13.36651407 -9.286710184 0.643235456 0.982285225 1.129736313 0.672118003 0.031417447 0.453043757 0.274902623 0.038600674 0.00679428 5.17E-10 9.286710184 0.147451087 S(ph)VVGTPAYLAPEVLLNQGYNR ddPTM_HeLa_CUDC101_4h_R1 1 SVVGTPAYLAPEVLLNQGYNR 21 0 Q9BZL6-2;Q9BZL6;Q9BZL6-3 Q9BZL6-2 PRKD2 Serine/threonine-protein kinase D2 1 0 S(0.994)VVGT(0.006)PAYLAPEVLLNQGYNR 149.74 5.93E-07 5702200 438.33 351.16 383.88 332.07 383.1 318.67 451.55 307.25 417.04 281.42 TRUE FALSE FALSE 386.9496219 361.9788234 404.633714 345.6132499 354.8394762 312.5919007 468.9664348 342.2260981 399.8494347 279.7461013 1.38321721 1.293954846 1.446432004 1.235453321 1.268434036 1.117412894 1.676400252 1.223345371 1.429329784 1 8.127974215 -9.28638863 0.841503769 0.983256324 1.335855026 0 0.195448145 0.502590366 0.590132563 0.117603777 0.026420031 5.17E-10 9.28638863 0.352598703 DTSEDIEELVEPVAAHGPK ddPTM_HeLa_CUDC101_4h_R1 1 DTSEDIEELVEPVAAHGPK 19 0 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 0 166.48 3.69E-06 3938000 2752.2 2471 2227 2346.9 2447.6 2121 2018.2 2402.6 2809.3 2321.6 FALSE FALSE TRUE 2429.591288 2547.128581 2347.398356 2442.616726 2267.045424 2080.545459 2096.04265 2676.102272 2693.499465 2307.79102 1.052777859 1.103708507 1.017162445 1.058421974 0.98234433 0.901531136 0.908246298 1.159594716 1.167133177 1 11.17229687 -5.677105118 7.254352365 1.033472487 0.975417128 0.099930042 0.083122545 0.368029842 26.88364721 0.010111406 0.020273119 2.10E-06 5.677105118 -0.058055359 DTSFLGSDDIGNIDVREPELEDLTR ddPTM_HeLa_CUDC101_4h_R1 1 DTSFLGSDDIGNIDVREPELEDLTR 25 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 0 0 57.216 0.0090627 4411500 684.04 669.69 506.13 467.85 697.25 652.57 623.18 674.19 359.46 449.63 FALSE FALSE TRUE 603.8578681 690.3223551 533.4929188 486.9309452 645.8152566 640.1233145 647.2162614 750.9370644 344.6429067 446.9555808 1.351046713 1.544498793 1.193615074 1.089439233 1.444920445 1.432185528 1.448054995 1.680115646 0.771089839 1 8.803987651 -12.31383288 0.103502467 8.45E-19 1.698318803 0.606793414 0.165009672 52.2741339 0.530064412 12.6420015 1.340511799 4.85E-13 12.31383288 1.698318803 LMGS(ph)PVA ddPTM_HeLa_CUDC101_4h_R1 1 LMGSPVA 7 0 C9J713;Q96IZ7-2;Q96IZ7 C9J713 RSRC1 Serine/Arginine-related protein 53 1 0 LMGS(1)PVA 89.142 0.01591 25121000 11004 10219 8812.2 8776 10263 9286.7 8206.6 9228.3 9671.9 8466.9 TRUE FALSE FALSE 9714.127801 10533.83528 9288.614187 9133.923213 9505.918937 9109.57167 8523.131311 10278.81237 9273.220188 8416.538502 1.154171373 1.251563844 1.10361453 1.085235125 1.12943331 1.082341828 1.012664685 1.221263631 1.101785513 1 13.0390113 -9.285786876 1.072615118 1.001739911 1.127116347 0.103729664 0.071870832 0.455405139 0.957959943 0.041520498 0.011830833 5.18E-10 9.285786876 0.125376436 DTSKPTPGTSLFTPSEGAASK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 DTSKPTPGTSLFTPSEGAASKK 22 2 O15014;E7ERY8;O15014-2 O15014 ZNF609 Zinc finger protein 609 0 1 DTSKPTPGTSLFTPSEGAASK(1)K 206.11 5.86E-23 1278600 800.02 843.64 995.94 590.61 951.66 870.67 724.92 523.14 708.67 1263.6 FALSE TRUE FALSE 706.2428684 869.6315484 1049.783529 614.6976286 881.4579378 854.0634204 752.8804072 582.692143 679.4583226 1256.084051 0.562257651 0.692335475 0.835758983 0.489376191 0.70175076 0.679941298 0.599386965 0.463895822 0.540933803 1 10.29471729 -9.387742902 0.790013108 1.036253597 0.6283501 0 0.175882565 0.409004634 0.389242154 0.110803465 0.020213325 4.10E-10 9.387742902 -0.407903498 S(ph)PGLLDTTPIR ddPTM_HeLa_CUDC101_4h_R1 4 SPGLLDTTPIR 11 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 0 S(1)PGLLDTTPIR;S(1)PGLLDTTPIR;S(1)PGLLDTTPIR;S(1)PGLLDTTPIR ;;; 124.21 0.0033323 43498600 3347.28 3353.46 2583.59 2628.17 2483.56 3087.3 3023.11 2603.11 3080.23 2707.7 TRUE FALSE FALSE 2954.916913 3456.776128 2723.26669 2735.358133 2300.352727 3028.414896 3139.712365 2899.43752 2953.261616 2691.59448 1.097831391 1.284285636 1.011767081 1.016259378 0.854643128 1.125137876 1.16648789 1.0772193 1.097216404 1 11.39424535 -9.285199717 1.18311225 1.002810377 1.079155212 0 0.109371749 1.079256454 2.842699467 0.061577533 0.019219209 5.19E-10 9.285199717 0.076344835 S(ph)PPGSGASTPVGPWDQAVQR ddPTM_HeLa_CUDC101_4h_R1 2 SPPGSGASTPVGPWDQAVQR 20 0 C9JUG3;Q8TE77-4;Q8TE77-2;Q8TE77 C9JUG3 SSH3 Protein phosphatase Slingshot homolog 3 1 0 S(1)PPGSGASTPVGPWDQAVQR;S(1)PPGSGASTPVGPWDQAVQR ; 185.71 9.00E-12 68384000 472.83 424.57 337.03 345.36 516.06 454.75 364.47 362.88 378.12 351.1 TRUE FALSE FALSE 417.4055842 437.6504985 355.2508613 359.4452736 477.9912819 446.0764014 378.52773 404.1887924 362.5337336 349.0116416 1.195964645 1.253971061 1.017876824 1.029894796 1.369556843 1.278113244 1.084570498 1.158095445 1.038743957 1 8.447131349 -9.284977843 0.804172266 0.988848172 1.174923384 0.251588638 0.105284422 0.822862662 0.864752769 0.099460109 0.021423624 5.19E-10 9.284977843 0.186075212 DTSLYRPALEELRR ddPTM_HeLa_CUDC101_4h_R1 1 DTSLYRPALEELRR 14 2 Q13200;C9JPC0;H7C2Q3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 0 74.78 0.017432 21965000 2109.7 1900.8 1888.2 1766.5 2274 1837.3 1703.7 1870.5 1505.8 1300.3 FALSE FALSE TRUE 1862.404164 1959.361395 1990.281803 1838.545505 2106.25155 1802.256564 1769.41228 2083.430159 1443.730287 1292.565758 1.440858349 1.515869799 1.539791528 1.422399978 1.629512106 1.394324856 1.36891471 1.611856222 1.116949198 1 10.33602196 -8.959881387 0.61326766 0.964871095 1.498059407 0.789109552 0.088768914 0.267673797 0.172407093 0.075371768 0.019296231 1.10E-09 8.959881387 0.533188311 S(ph)PAPRPPR ddPTM_HeLa_CUDC101_4h_R1 1 SPAPRPPR 8 1 F8VP90;P50281 F8VP90 MMP14 Matrix metalloproteinase-14 1 0 S(1)PAPRPPR 98.458 0.011376 2116800 895.72 568.23 1229.2 1024.3 639.2 862.5 853.18 484.8 1065.1 1452.9 TRUE FALSE FALSE 790.7250594 585.7364928 1295.65427 1066.075381 592.0474895 846.0492495 886.0874384 539.9876724 1021.196127 1444.258086 0.547495678 0.405562204 0.89710716 0.738147421 0.409931919 0.585801982 0.613524305 0.373885857 0.707073159 1 10.49611286 -9.284705927 0.690202007 1.048105036 0.573195353 0.220170256 0.176453574 0.607032256 0.437945664 0.173193113 0.032416427 5.19E-10 9.284705927 -0.474909682 STFREES(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 1 STFREESPLR 10 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 STFREES(1)PLR 129 0.013154 333900000 3702 3147.1 2633.8 3650.3 3932.9 3594.6 3221.2 3658.7 3422.6 4327.4 TRUE FALSE FALSE 3268.057172 3244.058421 2776.191195 3799.175012 3642.777802 3526.038994 3345.442763 4075.191619 3281.518979 4301.660432 0.759719932 0.754140982 0.645376649 0.883188032 0.846830627 0.819692547 0.777709635 0.947353164 0.762849377 1 12.07067793 -9.284626676 1.013004897 0.999918177 0.799366469 0 0.105469672 0.368261983 0.67758464 0.052697866 0.014236715 5.19E-10 9.284626676 -0.200551708 DTSQSDKDLDDALDKLSDSLGQR ddPTM_HeLa_CUDC101_4h_R1 1 DTSQSDKDLDDALDKLSDSLGQR 23 2 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;P20810-2;E9PCH5;P20810-3;H0Y7F0;E7EQ12;E7EQA0;A0A0C4DGD1 P20810-6 CAST Calpastatin 0 0 52.464 0.01513 19355000 1702.3 1406 1663 1878.5 1886.8 2098.2 1949.6 1761.4 1741.3 2336.2 FALSE FALSE TRUE 1502.758975 1449.317193 1752.90681 1955.11335 1747.614523 2058.180331 2024.796725 1961.910656 1669.522877 2322.304179 0.647098252 0.624085857 0.754813614 0.841885128 0.752534719 0.886266472 0.871891264 0.844812094 0.718907924 1 11.18134124 RPLPVES(ph)PDTQR ddPTM_HeLa_CUDC101_4h_R1 1 RPLPVESPDTQR 12 1 P57682 P57682 KLF3 Krueppel-like factor 3 1 0 RPLPVES(0.982)PDT(0.018)QR 65.528 0.035547 8271300 1745.6 1480 1742.2 1503.9 1567.2 1395.9 1620.4 1477.2 1514 2212.8 TRUE FALSE FALSE 1540.983414 1525.597046 1836.388602 1565.235542 1451.590778 1369.275533 1682.899371 1645.358477 1451.592279 2199.638167 0.700562228 0.693567273 0.834859401 0.711587736 0.659922527 0.622500352 0.765080092 0.748013242 0.65992321 1 11.10305051 -9.28460225 0.641956398 1.039263065 0.711129713 0 0.119345193 0.384084669 0.232218579 0.072711239 0.012814867 5.19E-10 9.28460225 -0.328133351 VAADLQLST(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 2 VAADLQLSTPQK 12 0 Q9H582-2;Q9H582 Q9H582-2 ZNF644 Zinc finger protein 644 1 0 VAADLQLS(0.14)T(0.86)PQK;VAADLQLS(0.028)T(0.972)PQK ; 153.39 0.0018051 9803500 3882.8 3331 3834.3 3041.9 3819.7 3911.7 3893.5 2034.18 4626.2 5208.2 TRUE FALSE FALSE 3427.66407 3433.624162 4041.593856 3165.96183 3537.928341 3837.09084 4043.673599 2265.742829 4435.506078 5177.221395 0.66206635 0.663217564 0.780649222 0.611517567 0.683364313 0.741148687 0.781050933 0.437636843 0.856734866 1 12.3379623 -9.284450766 0.63223072 1.046391171 0.671766256 0.478515479 0.103227753 0.524351744 0.305544095 0.11233742 0.01956698 5.19E-10 9.284450766 -0.374624915 AAHTEDINACTLT(ph)TSPR ddPTM_HeLa_CUDC101_4h_R1 1 AAHTEDINACTLTTSPR 17 0 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 AAHTEDINACT(0.008)LT(0.331)T(0.331)S(0.331)PR 151.22 0.00015454 37702000 3070.3 2674.7 2435.9 3053.5 2464.5 2624.5 2341.2 1630.6 2727.6 1809 TRUE FALSE FALSE 2710.404088 2757.104337 2567.592122 3178.034928 2282.698745 2574.442035 2431.500868 1816.220913 2615.167174 1798.239988 1.507253819 1.533223794 1.427836184 1.767303002 1.269407176 1.431645416 1.352155933 1.00999918 1.454292637 1 10.81236986 -9.28346629 0.991159038 0.997974203 1.426022333 0 0.229578441 0.419066535 0.732480546 0.126970359 0.033635802 5.21E-10 9.28346629 0.428048129 VPCNVEGIS(ph)PELEK ddPTM_HeLa_CUDC101_4h_R1 3 VPCNVEGISPELEK 14 0 Q86VQ1;H7C2L5;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 VPCNVEGIS(1)PELEK;VPCNVEGIS(1)PELEK;VPCNVEGIS(1)PELEK ;; 130.95 0.00080515 336466900 9639.6 8115.7 7849.2 7866.9 8056.2 7814.4 8860.3 8032 8322.5 6848.6 TRUE FALSE FALSE 8509.660701 8365.735098 8273.551495 8187.746186 7461.910176 7665.35334 9202.044739 8946.330414 7979.443027 6807.864223 1.249975091 1.228834011 1.215293259 1.202689407 1.096072121 1.125955673 1.351678653 1.314117045 1.172091976 1 12.73298655 -9.283354673 0.820991515 0.987471567 1.221348386 0.179567749 0.088966564 0.452250261 0.500512372 0.069338871 0.015272057 5.21E-10 9.283354673 0.233876819 NSTDLDSAPEDPTS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 NSTDLDSAPEDPTSPK 16 0 I3L2J0;A0A0A0MQR4;Q96RK0;I3L373;I3L135;I3L1Q4 I3L2J0 CIC Protein capicua homolog 1 0 NSTDLDSAPEDPT(0.234)S(0.766)PK;NSTDLDSAPEDPT(0.415)S(0.585)PK ; 144.15 0.00027014 44178000 12987.5 9881.3 10232.8 8471.9 7879.8 6189.3 4546 4231.8 12199.5 12383.3 TRUE FALSE FALSE 11465.12494 10185.73114 10786.01612 8817.420701 7298.522853 6071.249415 4721.340743 4713.531006 11696.63145 12309.64358 0.931393737 0.827459469 0.876224892 0.716301869 0.592910981 0.493210821 0.383548127 0.382913687 0.950200659 1 13.58750137 -5.637137085 0.56863933 0.981288896 0.280539897 0.980562469 0.031369142 0.100311946 0.049941088 0.006632148 0.035411285 2.31E-06 5.637137085 -0.700748998 down DTTINEIEDTFR ddPTM_HeLa_CUDC101_4h_R1 1 DTTINEIEDTFR 12 0 Q16864;Q16864-2 Q16864 ATP6V1F V-type proton ATPase subunit F 0 0 108.31 0.03421 3257600 5931.4 5620.2 5546.7 5699.6 6419.4 6002.8 6002.9 5639.2 7203 7247.1 FALSE FALSE TRUE 5236.130283 5793.3517 5846.57138 5932.054324 5945.853651 5888.306591 6234.433864 6281.143734 6906.089291 7203.993927 0.726837132 0.804186089 0.811573613 0.823439662 0.825355173 0.817366957 0.865413537 0.871897422 0.958647295 1 12.81458125 -9.490120676 1.234916641 0.999966141 0.80954512 0.72205073 0.039502487 0.203986094 0.556809374 0.03270056 0.007975875 3.24E-10 9.490120676 -0.190421021 AGLS(ph)PANCQSDR ddPTM_HeLa_CUDC101_4h_R1 3 AGLSPANCQSDR 12 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 0 AGLS(0.981)PANCQS(0.019)DR;AGLS(1)PANCQSDR;AGLS(0.994)PANCQS(0.006)DR ;; 152 0.00048011 61030700 6697.2 5345.7 5681.8 5794.4 5981.4 5703.7 4929.7 4383 6282.1 3757.85 TRUE FALSE FALSE 5912.164368 5510.394681 5988.975295 6030.720678 5540.164039 5594.911426 5119.84018 4881.943003 6023.149179 3735.498141 1.582697714 1.4751432 1.603260146 1.614435465 1.483112514 1.497768494 1.370591013 1.306905483 1.61240856 1 11.86708493 -9.283296796 0.91446004 0.987188784 1.499371041 0 0.208962322 0.224679669 0.32362875 0.079024766 0.019348086 5.21E-10 9.283296796 0.512182257 DTVDPVQDEMLAR ddPTM_HeLa_CUDC101_4h_R1 2 DTVDPVQDEMLAR 13 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 0 ; ; 134.84 0.0045452 15177100 4199.2 3712 3299.7 3443.5 3910 3985 3229.2 3362 3644.1 2682 FALSE FALSE TRUE 3706.976142 3826.36232 3478.091763 3583.940814 3621.56709 3908.992764 3353.751326 3744.71649 3493.888656 2666.047345 1.390438977 1.435219194 1.304587396 1.344290011 1.358403142 1.466212808 1.2579489 1.404594895 1.310512607 1 11.38048669 -9.191841236 0.76121963 0.979070884 1.370796963 0.207078487 0.110823243 0.210391299 0.202299349 0.050741602 0.011770708 6.43E-10 9.191841236 0.391726078 EVEKQEDTENHPKT(ph)PESAPENK ddPTM_HeLa_CUDC101_4h_R1 2 EVEKQEDTENHPKTPESAPENK 22 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 EVEKQEDTENHPKT(0.953)PES(0.047)APENK;EVEKQEDT(0.001)ENHPKT(0.686)PES(0.314)APENK ; 74.698 0.00083374 40541000 8261.6 7445.2 7800.1 8169.5 7481.6 7896.7 7103.3 7696.6 8744.8 11336.6 TRUE FALSE FALSE 7293.187772 7674.577787 8221.797 8502.687522 6929.697273 7746.083604 7377.27666 8572.749833 8384.335643 11269.1694 0.647180596 0.681024263 0.729583229 0.754508804 0.614925291 0.687369524 0.65464245 0.760725971 0.744006532 1 13.46009356 -9.282630909 0.816718491 1.01807924 0.687177764 0.228755149 0.089804543 0.191121105 0.20889358 0.041349323 0.009070516 5.22E-10 9.282630909 -0.330901476 STAPSAAASASASAAASS(ph)PAGGGAEALELLEHCGVCR ddPTM_HeLa_CUDC101_4h_R1 4 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 37 0 Q13263-2;Q13263 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 1 0 STAPSAAASASASAAAS(0.211)S(0.789)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.205)S(0.795)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.461)S(0.539)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.173)S(0.827)PAGGGAEALELLEHCGVCR ;;; 205.29 4.95E-37 2364900000 7288.6 5894.8 5558.18 5060.72 6509.89 5520.23 6012.95 5397.8 7154.9 2502.33 TRUE FALSE FALSE 6434.241357 6076.411801 5858.672023 5267.118036 6029.668384 5414.94081 6244.871496 6012.263733 6859.971994 2487.44603 2.586685813 2.442831614 2.355296136 2.117480328 2.424039883 2.176907859 2.510555574 2.417042887 2.757837521 1 11.28044951 -9.28220546 0.864525626 0.943027221 2.383427174 0 0.556674223 0.134213181 0.168694944 0.129641512 0.030079795 5.22E-10 9.28220546 1.440399953 DISGPS(ph)PSKK ddPTM_HeLa_CUDC101_4h_R1 1 DISGPSPSKK 10 1 S4R3D6;Q96GX9-3;Q96GX9 S4R3D6 APIP Methylthioribulose-1-phosphate dehydratase 1 0 DIS(0.052)GPS(0.868)PS(0.081)KK 110.08 0.017089 136830000 2238.2 1839.2 2327.2 2226.4 2000.7 1892.4 1961.5 1881.8 2613.2 2970.1 TRUE FALSE FALSE 1975.841589 1895.863572 2453.015471 2317.202215 1853.112347 1856.305623 2037.155712 2096.016506 2505.48279 2952.433713 0.669224708 0.642135864 0.830845231 0.784844789 0.627655869 0.628737443 0.689992024 0.709928388 0.848616102 1 11.52768895 -9.281952949 0.72814693 1.02857361 0.694676579 0.54290598 0.077838551 0.345539709 0.284751839 0.071269508 0.01404342 5.22E-10 9.281952949 -0.333897031 VMDS(ph)DEDDDY ddPTM_HeLa_CUDC101_4h_R1 7 VMDSDEDDDY 10 0 O14737;K7EQA1 O14737 PDCD5 Programmed cell death protein 5 1 0 VMDS(1)DEDDDY;VMDS(1)DEDDDY;VMDS(1)DEDDDY;VMDS(1)DEDDDY;VMDS(1)DEDDDY;VMDS(1)DEDDDY;VMDS(1)DEDDDY ;;;;;; 201.61 8.49E-17 281584400 18304.1 15738.2 15556.6 14536.5 17430 16005.5 14468.1 14854 17779.7 18573.1 TRUE FALSE FALSE 16158.52115 16223.07529 16397.63685 15129.3613 16144.22363 15700.22175 15026.13946 16544.91932 17046.81324 18462.62638 0.875201654 0.878698131 0.888152992 0.819458781 0.874427251 0.850378567 0.813867927 0.896130322 0.923314641 1 14.17232018 -9.281744283 0.390077643 1.048171654 0.848446451 0.537675054 0.034359877 0.684551603 0.135140853 0.057640701 0.008467518 5.23E-10 9.281744283 -0.199725203 VEAKEES(ph)EES(ph)DEDMGFGLFD ddPTM_HeLa_CUDC101_4h_R1 1 VEAKEESEESDEDMGFGLFD 20 1 F8VWS0;P05388-2;Q8NHW5;P05388;F8W1K8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 2 0 VEAKEES(1)EES(1)DEDMGFGLFD 50.966 0.039685 5882900 2428 2155.7 1930.5 1918.1 2506.2 2170.5 2339.5 2044.1 1906.2 2467.1 TRUE FALSE FALSE 2143.393521 2222.114562 2034.868669 1996.328409 2321.322619 2129.101329 2429.735299 2276.792081 1827.625629 2452.425579 0.873989221 0.906088478 0.829737174 0.814022014 0.946541513 0.868161443 0.990747821 0.92838376 0.745231841 1 11.25999364 -9.281711336 0.961117674 1.001278385 0.89336254 0 0.093521909 0.495377711 0.805019189 0.037395644 0.009635938 5.23E-10 9.281711336 -0.107915845 DVAEVDTVRR ddPTM_HeLa_CUDC101_4h_R1 2 DVAEVDTVRR 10 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 174.86 2.06E-07 64629000 10640.5 10798.7 10777.5 10560.9 12230.3 10986.5 10708.7 11001.2 10513.5 9370.2 FALSE FALSE TRUE 9393.23672 11131.39515 11360.16425 10991.61915 11328.09514 10776.95082 11121.73815 12253.53214 10080.12908 9314.465634 1.008456855 1.195065352 1.219625977 1.180059016 1.216183041 1.157012248 1.194028577 1.315537855 1.082201543 1 13.18525729 -7.252227839 4.952096694 1.003459522 1.208614531 0.755858627 0.046409015 0.045142115 3.333771988 0.006352306 0.00756714 5.59E-08 7.252227839 0.205155009 DVAKPVIELYK(ac)SR ddPTM_HeLa_CUDC101_4h_R1 1 DVAKPVIELYKSR 13 2 F8VS11;P27144 F8VS11 AK4 "Adenylate kinase 4, mitochondrial" 0 1 DVAKPVIELYK(1)SR 92.906 0.031835 830090 415.4 298.66 334.99 336.72 448.49 265.57 386.73 230.69 235.48 351.34 FALSE TRUE FALSE 366.7074417 307.8613606 353.1005727 350.452897 415.4057862 260.5046947 401.6463056 256.9508171 225.7734147 349.2502141 1.049984873 0.88149226 1.011024642 1.003443614 1.189421708 0.745897022 1.150024508 0.735721287 0.646451758 1 8.44811719 -4.241417264 24.04199743 1.011248634 0.735720847 0.090151755 0.165232368 2257.030083 2710109.121 0.014259468 0.709101529 5.74E-05 4.241417264 -0.275527787 KSLDS(ph)DES(ph)EDEEDDYQQK ddPTM_HeLa_CUDC101_4h_R1 1 KSLDSDESEDEEDDYQQK 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 0 KS(0.25)LDS(0.839)DES(0.91)EDEEDDYQQK 71.042 0.0095449 15725000 1736.2 1551.7 1393.1 1370.1 1932 1745.6 1487.2 1553.9 1946.5 1963.5 TRUE FALSE FALSE 1532.685268 1599.506038 1468.4152 1425.9786 1789.480209 1712.305588 1544.561802 1730.789695 1866.264446 1951.821015 0.785259128 0.819494219 0.752330869 0.730588814 0.916825977 0.877286173 0.791343976 0.886756358 0.956165771 1 10.93060505 -9.281343596 0.945841028 1.002961824 0.817381929 0.540120206 0.057808571 0.334166868 0.522618648 0.043115335 0.010941967 5.23E-10 9.281343596 -0.185579896 TTKPPYPGS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 TTKPPYPGSPVK 12 1 Q96T17;Q96T17-2;Q96T17-5;Q96T17-4 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 T(0.02)T(0.007)KPPYPGS(0.972)PVK;T(0.011)T(0.014)KPPYPGS(0.975)PVK ; 82.663 0.017455 868230000 10249.7 8486.4 8262.7 9345.3 9132.9 7984.7 9075.3 7969.9 6958 7546.1 TRUE FALSE FALSE 9048.245704 8747.855925 8709.406555 9726.441728 8459.184162 7832.405151 9425.337361 8877.161201 6671.188295 7501.215462 1.206237276 1.166191795 1.161066043 1.29664876 1.127708463 1.04415147 1.256508017 1.183429705 0.889347644 1 12.87290867 -9.281324179 0.842434685 0.991281425 1.181088122 0.590093157 0.074885812 0.441662564 0.521251467 0.055565098 0.012585099 5.23E-10 9.281324179 0.189806697 DVDDFFEHER ddPTM_HeLa_CUDC101_4h_R1 6 DVDDFFEHER 10 0 G3V5X9;Q9UNH7;A0A0A0MRI2;Q9UNH7-2 G3V5X9 SNX6 "Sorting nexin-6;Sorting nexin-6, N-terminally processed" 0 0 ;;;;; ;;;;; 187.16 2.24E-11 181791270 40090 33381.3 32393.2 31866.7 32951.6 32291.1 31407.7 30602.7 35606.5 37228 FALSE FALSE TRUE 35390.71097 34409.73829 34144.47438 33166.36177 30520.82612 31675.20107 32619.10551 34086.38767 34138.785 37006.5662 0.956335986 0.929827915 0.922659892 0.896229107 0.82474083 0.855934617 0.881441021 0.92109026 0.922506152 1 15.17549366 -7.031690533 0.736577219 0.988503305 0.870132581 0.519825134 0.032697747 0.210687617 0.234320452 0.006703673 0.00929102 9.30E-08 7.031690533 -0.118370724 ELELMFGCQVEGDAAET(ph)PPRPR ddPTM_HeLa_CUDC101_4h_R1 3 ELELMFGCQVEGDAAETPPRPR 22 1 H3BRW9;Q02750-2;Q02750 H3BRW9 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 1 0 ELELMFGCQVEGDAAET(1)PPRPR;ELELMFGCQVEGDAAET(1)PPRPR;ELELMFGCQVEGDAAET(1)PPRPR ;; 115.92 6.43E-06 22975500 4557.66 4134.47 3560.09 3888.3 4384.54 3589.54 3274.05 2010.68 4408.95 2076.3 TRUE FALSE FALSE 4023.418004 4261.84812 3752.559234 4046.881681 4061.101219 3521.075505 3400.331205 2239.567684 4227.211215 2063.950075 1.94937758 2.064898842 1.818144382 1.960745916 1.967635394 1.7059887 1.647487139 1.085088109 2.04811699 1 11.01119236 -9.281199646 0.993858366 0.997087892 1.798147317 0 0.413731388 0.33171552 0.584048699 0.188083388 0.05011113 5.23E-10 9.281199646 0.801059425 YTIS(ph)QEAYDQR ddPTM_HeLa_CUDC101_4h_R1 1 YTISQEAYDQR 11 0 K7EP07;K7EK42;A0A494C0X0;Q99426-2;Q99426 K7EP07 TBCB Tubulin-folding cofactor B 1 0 YT(0.005)IS(0.995)QEAYDQR 99.991 0.013823 10804000 809 888.45 974.69 840.47 1072.7 1247.4 1003.2 3417.4 1170.5 4296.8 TRUE FALSE FALSE 714.1702464 915.8220914 1027.38469 874.7479994 993.5690581 1223.607923 1041.89376 3806.423002 1122.251495 4271.242443 0.167204334 0.214415853 0.240535325 0.204799426 0.232618277 0.286475877 0.243932245 0.891174653 0.262745913 1 12.06044007 -9.280854524 0.937731434 1.013123095 0.289689435 0 0.299912458 0.289122356 0.442979665 0.144914066 0.036491414 5.24E-10 9.280854524 -0.723433659 RRNDSYT(ph)EEEPEWFSAGPTSQSETIELTGFDDK ddPTM_HeLa_CUDC101_4h_R1 1 RRNDSYTEEEPEWFSAGPTSQSETIELTGFDDK 33 2 B1AKL4;Q9NRA8;Q9NRA8-3 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 RRNDS(0.282)Y(0.307)T(0.334)EEEPEWFS(0.015)AGPT(0.015)S(0.016)QS(0.016)ET(0.016)IELTGFDDK 46.415 0.023274 13125000 1704.6 1457.1 1480.3 1583.4 1332.2 1335.5 1369.6 1308 1284.4 1201.3 TRUE FALSE FALSE 1504.789372 1501.991524 1560.329496 1647.977896 1233.92626 1310.027563 1422.425931 1456.897433 1231.456488 1194.154614 1.260129429 1.257786476 1.306639423 1.380037289 1.033305273 1.097033455 1.191157254 1.22002412 1.031237056 1 10.22177393 -9.280547162 0.997488046 0.999456253 1.218486895 0.425490704 0.093795466 0.444217106 0.789118662 0.068936315 0.018448203 5.24E-10 9.280547162 0.219030641 NDSPT(ph)QIPVSSDVCR ddPTM_HeLa_CUDC101_4h_R1 3 NDSPTQIPVSSDVCR 15 0 Q8TC07-2;Q8TC07-3;Q8TC07 Q8TC07-2 TBC1D15 TBC1 domain family member 15 1 0 NDS(0.09)PT(0.91)QIPVSSDVCR;NDS(0.111)PT(0.889)QIPVSSDVCR;NDS(0.036)PT(0.964)QIPVSSDVCR ;; 262.82 2.38E-69 286894000 8539.6 6915.2 7625.6 7158.3 8108.6 7566.3 7508.3 7089.5 7987.6 5330.1 TRUE FALSE FALSE 7538.601033 7128.249115 8037.863002 7450.246415 7510.444733 7421.985434 7797.897646 7896.540023 7658.347747 5298.396328 1.422808066 1.345359742 1.517036949 1.406132338 1.417493949 1.400798463 1.471746763 1.490364166 1.445408624 1 12.37134005 -9.280039486 0.510740283 0.902860647 1.449581758 0 0.145989033 0.269738389 0.095355558 0.074060848 0.011365058 5.25E-10 9.280039486 0.546721111 DVDEIEAWISEK ddPTM_HeLa_CUDC101_4h_R1 2 DVDEIEAWISEK 12 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 260.59 9.67E-69 42451000 7755.1 7183.5 6428.2 6695.7 8265.6 7300.2 6533.1 6520.8 7705.7 6952.5 FALSE FALSE TRUE 6846.058934 7404.81512 6775.727936 6968.779587 7655.863155 7160.960848 6785.083855 7263.101514 7388.067784 6911.146221 0.990582273 1.071430828 0.980405814 1.008339191 1.107755922 1.036146627 0.981759557 1.050925748 1.069007593 1 12.75470929 -7.329214001 24.99988416 0.995552719 1.031719433 0 0.043431377 226.1563068 83421.0853 0.006163052 0.00704772 4.69E-08 7.329214001 0.036166714 ELNSNHDGADETS(ph)EKEQQEAIEHIDEVQNEIDR ddPTM_HeLa_CUDC101_4h_R1 1 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNSNHDGADET(0.396)S(0.604)EKEQQEAIEHIDEVQNEIDR 114.71 1.46E-15 20027000 638.74 651.15 430.94 392.46 698.09 717.88 655.23 597.58 459.51 796.52 TRUE FALSE FALSE 563.8678655 671.2111597 454.2379199 408.4662152 646.5932915 704.1876351 680.5024406 665.6060917 440.5688033 791.7822636 0.71215016 0.847721893 0.573690446 0.515881997 0.816630179 0.889370307 0.859456535 0.840642841 0.556426714 1 9.62895994 -9.27937004 0.916048776 1.005881261 0.753327087 0 0.181174308 0.56861286 0.823844133 0.09853553 0.02429768 5.26E-10 9.27937004 -0.252554174 (ac)AENHCELLS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 1 AENHCELLSPAR 12 0 H3BSS5;Q9NXV2 H3BSS5 KCTD5 BTB/POZ domain-containing protein KCTD5 1 0 AENHCELLS(1)PAR 74.392 4.48E-08 0 398.56 343.99 392.5 381.44 494.55 333.15 481.99 187.01 538.1 586.67 TRUE FALSE FALSE 351.841401 354.5879242 413.7197372 396.9967719 458.0680318 326.7957188 500.5805158 208.2984625 515.9192902 583.1804607 0.603314796 0.608024356 0.709419751 0.680744296 0.785465328 0.560368086 0.858362976 0.357176683 0.884664911 1 9.187798573 -9.279101943 0.864556781 1.01405505 0.653353723 0.434835936 0.132694006 0.395337587 0.497655711 0.095524383 0.022260513 5.26E-10 9.279101943 -0.360701326 DFT(ph)PVCTTELGR ddPTM_HeLa_CUDC101_4h_R1 1 DFTPVCTTELGR 12 0 P30041 P30041 PRDX6 Peroxiredoxin-6 1 0 DFT(0.959)PVCT(0.04)T(0.001)ELGR 152 0.0023171 21715000 2753.5 2273 2328.6 2290 2203 2366.1 2380 2636 2283.4 1163.1 TRUE FALSE FALSE 2430.738904 2343.028436 2454.49116 2383.396098 2040.489079 2320.970585 2471.797397 2936.071585 2189.277286 1156.181829 2.102384627 2.026522452 2.122928329 2.061437083 1.764851364 2.007444267 2.137896769 2.539454876 1.893540644 1 10.17515259 -9.27893668 0.5871609 0.816459345 2.10679261 0.218633359 0.330150208 0.370502426 0.181383174 0.261519 0.043483058 5.26E-10 9.27893668 1.290333265 DVDETGITVASLER ddPTM_HeLa_CUDC101_4h_R1 1 DVDETGITVASLER 14 0 Q8WU90;H7C466 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 0 0 155.48 0.00046115 5299400 413.51 284.21 313.79 517.63 400.36 407.41 302.27 228.66 380.44 500.67 FALSE FALSE TRUE 365.0389846 292.9661732 330.7544366 538.7411888 370.8262404 399.639333 313.9286552 254.6897301 364.7581022 497.6919926 0.733463648 0.588649562 0.664576568 1.082479117 0.745091836 0.802985258 0.630768949 0.511741667 0.732899278 1 8.959109365 -13.52287874 0.213500349 2.42383779 0.684017674 0 0.16924551 44.06686432 0.551287913 26.07788739 0.133107017 3.00E-14 13.52287874 -1.739820116 DVDFEGTDEPIFGK ddPTM_HeLa_CUDC101_4h_R1 2 DVDFEGTDEPIFGK 14 0 P42285;H0Y8U3 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 0 0 ; ; 234.17 1.24E-42 26673000 6463.6 5256.3 5325.3 4930.1 5555.1 5362.1 5194.7 5383.6 5912.7 5519.9 FALSE FALSE TRUE 5705.946606 5418.240373 5613.201826 5131.170788 5145.31134 5259.826876 5395.061319 5996.447263 5668.976003 5487.067389 1.039890018 0.987456502 1.022987587 0.935139014 0.937716083 0.958586163 0.983232196 1.092832808 1.033152247 1 12.42181958 -6.321703115 24.99967677 1.016745672 0.977891638 0.137379263 0.04363099 352.9691464 146424.4077 0.006820522 0.010418521 4.77E-07 6.321703115 -0.038854034 DVDFEGTDEPIFGKK(ac)PR ddPTM_HeLa_CUDC101_4h_R1 1 DVDFEGTDEPIFGKKPR 17 2 P42285;H0Y8U3 P42285 SKIV2L2 Superkiller viralicidic activity 2-like 2 0 1 DVDFEGTDEPIFGK(0.409)K(0.591)PR 123.72 0.008649 475990 317.3 369.36 187.21 392.13 473.33 523.09 228.36 317.97 312.88 331.21 FALSE TRUE FALSE 280.106575 380.7395438 197.3311389 408.1227563 438.4133889 513.1129298 237.1679217 354.1664195 299.982954 329.2399482 0.850767279 1.156419644 0.599353572 1.239590635 1.331592327 1.558477131 0.720349772 1.075709134 0.911137775 1 8.362995585 DVDIIDHHDNTYTVK ddPTM_HeLa_CUDC101_4h_R1 2 DVDIIDHHDNTYTVK 15 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 ; ; 83.869 0.012451 445140000 16114.4 13981.6 14046.6 14681.7 15140.2 15018.1 13521 14497.3 16120.7 15924.7 FALSE FALSE TRUE 14225.49446 14412.35652 14806.00168 15280.48319 14023.33761 14731.65476 14042.5095 16147.61403 15456.19792 15829.97918 0.898642651 0.910446967 0.935314034 0.965287637 0.885872145 0.930617444 0.887083258 1.020065399 0.976387761 1 13.95037174 -9.425592202 1.138716635 1.00025714 0.924657542 0.257689634 0.038903081 0.420050632 0.96898782 0.02517094 0.006245555 3.75E-10 9.425592202 -0.075599597 DVDLEFLAK ddPTM_HeLa_CUDC101_4h_R1 2 DVDLEFLAK 9 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 128.38 0.020375 30705000 8461 6762 6890.7 6651.7 7320.4 7132.1 7520.1 6393.3 7166.4 8115.8 FALSE FALSE TRUE 7469.214406 6970.329205 7263.232085 6922.985077 6780.388676 6996.067075 7810.152776 7121.087429 6870.997959 8067.526861 0.925836943 0.863998264 0.900304667 0.858129783 0.840454428 0.867188569 0.968097524 0.882685308 0.851685786 1 12.97791076 -8.198127862 0.74641202 0.992139225 0.883051311 0 0.055492601 0.292910647 0.354473106 0.014144254 0.008710648 6.34E-09 8.198127862 -0.109087914 DVDSEISDLENEVENK ddPTM_HeLa_CUDC101_4h_R1 1 DVDSEISDLENEVENK 16 0 C9JMN1;Q96SB8;Q96SB8-2 C9JMN1 SMC6 Structural maintenance of chromosomes protein 6 0 0 264.58 1.75E-69 2220300 996.72 783.14 517.44 836.56 839.05 792.47 837.02 823.58 944.27 778.84 FALSE FALSE TRUE 879.8859925 807.2676152 545.4143716 870.6785327 777.1549531 777.3549551 869.3041418 917.3330182 905.3467909 774.207425 1.136499036 1.04270198 0.704480936 1.124606281 1.003807156 1.004065487 1.122831057 1.184867244 1.169385312 1 9.596576334 -4.574209463 3.986636112 1.035337265 1.174491906 0.156814931 0.122155164 0.303820762 9.739869682 0.016712959 0.078030825 2.67E-05 4.574209463 0.139154641 (ac)ASLEVSRS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 ASLEVSRSPR 10 1 Q5QPJ9;Q5QPK2;O60762 Q5QPJ9 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 1 0 ASLEVS(0.009)RS(0.991)PR;ASLEVS(0.011)RS(0.989)PR ; 107.09 1.77E-17 1078380000 216.037 138.23 213.88 233.236 375.11 227.45 156.96 154.92 303.73 343.7 TRUE FALSE FALSE 190.7134704 142.4887025 225.4429998 242.7483722 347.4388826 223.1117702 163.0139998 172.5554666 291.2101208 341.6556571 0.558203754 0.417053544 0.659854433 0.710505935 1.016927059 0.653031102 0.47712952 0.505056665 0.85234977 1 8.416399205 -9.278880472 1.00151628 1.000531195 0.628406155 0.341649193 0.162920146 0.44199319 0.793185671 0.116612001 0.031399646 5.26E-10 9.278880472 -0.37212504 DVEDEETWIR ddPTM_HeLa_CUDC101_4h_R1 2 DVEDEETWIR 10 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 213.53 1.75E-23 135020000 6561.4 6328.8 5480.2 5536.2 6870.6 6011.9 6321 6478.5 6227.8 5956 FALSE FALSE TRUE 5792.282638 6523.782827 5776.476189 5761.990165 6363.769526 5897.233024 6564.803087 7215.986253 5971.087448 5920.573447 0.978331354 1.101883607 0.975661604 0.973214878 1.074856951 0.996057743 1.108812034 1.218798537 1.008531944 1 12.5315212 -1.000003303 0.67448729 0.996650356 25.2555014 0.680604238 0.043241184 87.40138081 0.477524996 0.006909333 3188.015929 0.099999239 1.000003303 24.25885105 DVEDEILWVGER ddPTM_HeLa_CUDC101_4h_R1 4 DVEDEILWVGER 12 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ;;; ;;; 199.68 1.35E-15 78550400 9675.9 8528.5 7744.6 8559 9744.1 8723.8 9047 8620.2 9934.9 9119.1 FALSE FALSE TRUE 8541.70567 8791.252976 8163.296502 8908.073015 9025.297156 8557.40805 9395.945821 9601.488724 9525.379217 9064.859188 0.942287739 0.969816827 0.900543112 0.982703959 0.995635671 0.944019965 1.036524189 1.059198883 1.050802778 1 13.14606889 -4.653264756 5.213089618 0.967711721 1.053369785 0.373881997 0.038441181 0.119354191 4.886601531 0.004415806 0.01742833 2.22E-05 4.653264756 0.085658063 DVEDEILWVTER ddPTM_HeLa_CUDC101_4h_R1 4 DVEDEILWVTER 12 0 O15020-2;O15020 O15020-2 SPTBN2 "Spectrin beta chain, non-erythrocytic 2" 0 0 ;;; ;;; 199.68 1.35E-15 9352100 3390.74 3042.34 2540.03 3334.91 3601.16 3312.2 3172.1 3175.99 3354.59 3417.67 FALSE FALSE TRUE 2993.282597 3136.070889 2677.351705 3470.922045 3335.509601 3249.025304 3294.44896 3537.531864 3216.31238 3397.341547 0.881066138 0.923095558 0.788072576 1.021658257 0.981799903 0.956343441 0.969713794 1.041264711 0.946714464 1 11.73019055 DVEDESTGLEK ddPTM_HeLa_CUDC101_4h_R1 3 DVEDESTGLEK 11 0 P36952 P36952 SERPINB5 Serpin B5 0 0 ;; ;; 190.86 1.67E-10 98614000 5410.88 4447.08 4782.79 4795.02 4832.35 4375.71 4957.01 4807.97 4691.42 4876.05 FALSE FALSE TRUE 4776.624849 4584.089264 5041.362095 4990.581641 4475.877168 4292.250622 5148.203536 5355.28987 4498.037682 4847.047038 0.985471115 0.945748871 1.040089369 1.029612794 0.923423506 0.885539296 1.062131953 1.104856179 0.927995468 1 12.24289037 -4.538397664 24.78027048 0.984452877 1.094175173 0.458471632 0.048667844 119.7530498 191219.1943 0.006353757 0.023789993 2.89E-05 4.538397664 0.109722296 KQMESS(ph)PRRIAPK ddPTM_HeLa_CUDC101_4h_R1 1 KQMESSPRRIAPK 13 3 H7BXS4 H7BXS4 CAMK2B 1 0 KQMES(0.013)S(0.987)PRRIAPK 52.071 0.0033757 0 364.57 296.48 288.84 296.44 259.04 318.88 266.03 343.77 446.54 178.67 TRUE FALSE FALSE 321.8356573 305.6141974 304.4555641 308.5301045 239.9311353 312.7978953 276.2908662 382.9033872 428.1334322 177.6072629 1.812063606 1.720730292 1.714206723 1.737148017 1.350908355 1.761177388 1.555628197 2.155899376 2.410562638 1 7.472546769 -9.278866083 0.839310092 0.965047906 1.715516837 0 0.477898876 0.317575166 0.37183543 0.157579356 0.035683379 5.26E-10 9.278866083 0.750468931 QGS(ph)PSQSLVACECEASK ddPTM_HeLa_CUDC101_4h_R1 1 QGSPSQSLVACECEASK 17 0 Q4AC94 Q4AC94 C2CD3 C2 domain-containing protein 3 1 0 QGS(0.797)PS(0.203)QSLVACECEASK 164.59 2.05E-05 7492400 1543.4 1360.4 1161.6 1315.4 1446.6 1404.6 1344.7 1373.1 1513.2 538.1 TRUE FALSE FALSE 1362.484992 1402.312312 1224.39961 1369.047698 1339.8872 1377.809595 1396.565529 1529.408154 1450.825256 534.8993573 2.547180087 2.621637683 2.289028007 2.559449136 2.504933277 2.575829596 2.610894013 2.859244703 2.712333144 1 9.06312366 -9.278819833 0.541435149 0.685171158 2.611106547 0 0.550307276 0.213176476 0.086254853 0.213795384 0.033823181 5.26E-10 9.278819833 1.925935389 GSATAES(ph)PVACSNSCSSFILMDDLSPK ddPTM_HeLa_CUDC101_4h_R1 1 GSATAESPVACSNSCSSFILMDDLSPK 27 0 G1UD79;Q7Z309-3;Q7Z309-2;Q7Z309 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 GS(0.001)AT(0.011)AES(0.988)PVACSNSCSSFILMDDLSPK 118.93 1.73E-10 3258300 3052.7 2688.6 2734.8 2428.9 3065.3 3230 2700 3183.8 2963.8 696.52 TRUE FALSE FALSE 2694.867134 2771.432579 2882.65156 2527.961041 2839.178926 3168.393132 2804.139904 3546.230923 2841.63091 692.3770681 3.892195825 4.002779276 4.163412818 3.651133403 4.100625305 4.576109287 4.050018456 5.1218203 4.104166704 1 9.435414132 -9.278745378 0.408512193 1.01E-13 4.412455942 0.012319151 1.0229578 0.396274555 0.086157944 0.759939007 0.111550222 5.26E-10 9.278745378 4.412455942 DVEEEK(ac)FPTQLSR ddPTM_HeLa_CUDC101_4h_R1 1 DVEEEKFPTQLSR 13 1 Q2TAY7;Q2TAY7-2 Q2TAY7 SMU1 "WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed" 0 1 DVEEEK(1)FPTQLSR 104.41 0.0094941 514790 254.54 142.69 292.4 0 166.45 154.07 151.59 171.95 240.41 132.26 FALSE TRUE FALSE 224.7032071 147.0861098 308.2080285 0 154.1713151 151.1313714 157.4368771 191.524093 230.500198 131.4733116 1.709116506 1.118752604 2.344263065 0 1.17264343 1.149521295 1.197481642 1.456752633 1.753209037 1 7.03862616 -6.268452798 24.99911732 1.392543067 1.024935746 0.203009905 0.516642205 992.1568139 3536509.791 0.079093334 0.122414285 5.39E-07 6.268452798 -0.367607321 RSES(ph)PPAELPSLR ddPTM_HeLa_CUDC101_4h_R1 1 RSESPPAELPSLR 13 1 Q14669;Q14669-2;Q14669-3;G5E9G6;H7C1L9 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 RS(0.122)ES(0.878)PPAELPSLR 126.07 0.00084046 21408000 3110.1 2590.8 2819.8 2689 3049.1 3185.9 3108.5 2312.1 3284 3642.9 TRUE FALSE FALSE 2745.538793 2670.619477 2972.246917 2798.669043 2824.173968 3125.134266 3228.395886 2575.300118 3148.63213 3621.231869 0.758178126 0.737489223 0.820783376 0.772849998 0.779893161 0.863003083 0.891518688 0.711166866 0.869491997 1 11.82226484 -9.278147087 0.952391348 1.002863808 0.794128282 0.382123398 0.064875974 0.267909659 0.426541849 0.038930227 0.009990609 5.27E-10 9.278147087 -0.208735525 SPGSTPTT(ph)PTSSQAPQK ddPTM_HeLa_CUDC101_4h_R1 1 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 SPGSTPT(0.163)T(0.835)PT(0.001)SSQAPQK 165.24 8.19E-05 29003000 1709.1 1594.1 1210.2 1703.6 1632.7 1594.6 1329.7 1875.3 1485 2004 TRUE FALSE FALSE 1508.761889 1643.212332 1275.627073 1773.080172 1512.258974 1564.185662 1380.986974 2088.776572 1423.787671 1992.080119 0.757380125 0.824872612 0.640349281 0.890064689 0.759135619 0.785202185 0.693238671 1.048540444 0.714724101 1 10.96005996 -9.277270629 0.910297256 1.005302594 0.791180838 0 0.13723919 0.504705378 0.720820362 0.073906911 0.018164414 5.28E-10 9.277270629 -0.214121756 YTLENKEEGSLS(ph)DTEADAVSGQLPDPTTNPSAGK ddPTM_HeLa_CUDC101_4h_R1 3 YTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGK 34 1 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 YTLENKEEGS(0.002)LS(0.57)DT(0.421)EADAVS(0.007)GQLPDPTTNPSAGK;Y(0.001)TLENKEEGS(0.016)LS(0.782)DT(0.196)EADAVS(0.005)GQLPDPTTNPSAGK;YTLENKEEGS(0.011)LS(0.494)DT(0.494)EADAVS(0.001)GQLPDPTTNPSAGK ;; 102.06 6.40E-13 87287000 14031.6 12049.4 12976.5 11809.9 12873.5 13057.8 11477.9 12535.2 13974.8 14849.6 TRUE FALSE FALSE 12386.83712 12420.62773 13678.04884 12291.55877 11923.84755 12808.74422 11920.60645 13962.1565 13398.75283 14761.27392 0.839144181 0.841433321 0.926617101 0.832689566 0.807779032 0.867726207 0.807559464 0.945863926 0.90769624 1 13.84952961 -9.27717291 0.77801012 1.010317859 0.854747281 0.286327024 0.051823765 0.395619257 0.384750479 0.039256594 0.008282338 5.28E-10 9.27717291 -0.155570578 DVESYIHR ddPTM_HeLa_CUDC101_4h_R1 1 DVESYIHR 8 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 0 104.44 0.013666 9585100 9222.5 6101.8 6639.3 6514.3 7612.5 8910.5 7242.7 5929.2 6976.8 8861.1 FALSE FALSE TRUE 8141.45253 6289.789226 6998.240641 6779.981311 7050.941041 8740.547058 7522.053365 6604.156161 6689.213351 8808.393783 0.924283443 0.71406767 0.794496796 0.769718234 0.800479771 0.992297492 0.853964247 0.749757143 0.759413523 1 13.10466325 -7.48343817 4.591848406 0.968116305 0.816287318 0 0.09757031 0.140359546 6.260980725 0.013645611 0.01511771 3.29E-08 7.48343817 -0.151828987 DVFFYQADDEHYIPR ddPTM_HeLa_CUDC101_4h_R1 4 DVFFYQADDEHYIPR 15 0 K7EKE5;K7EIS0;Q9NRH3;P23258 K7EKE5 TUBG1;TUBG2 Tubulin gamma chain;Tubulin gamma-2 chain;Tubulin gamma-1 chain 0 0 ;;; ;;; 241.41 6.34E-44 62056000 18042.5 15696.2 14504.6 14123.3 16250.9 15170.6 14994.7 14765.7 15666.8 16069.2 FALSE FALSE TRUE 15927.5855 16179.78132 15288.76255 14699.30922 15052.10348 14881.24608 15573.0506 16446.5676 15021.00787 15973.61968 0.997118112 1.012906382 0.957125739 0.920224064 0.94231012 0.931613897 0.974923086 1.029608062 0.940363435 1 13.96340365 -6.749253381 24.09183733 0.999671128 0.956203897 0.099980163 0.033957155 123.7242692 244602.7623 0.004539117 0.006389931 1.78E-07 6.749253381 -0.043467231 EASSSS(ph)PEAGEGQIR ddPTM_HeLa_CUDC101_4h_R1 1 EASSSSPEAGEGQIR 15 0 J3QSS7;Q86U28-2;Q86U28 J3QSS7 ISCA2 "Iron-sulfur cluster assembly 2 homolog, mitochondrial" 1 0 EASSS(0.121)S(0.879)PEAGEGQIR 143.64 0.00035753 5986500 766.25 601.19 698.86 780.76 621.27 782.52 685.38 703.92 657.11 885.01 TRUE FALSE FALSE 676.4313366 619.7119513 736.6424855 812.6027675 575.4401498 767.5947348 711.8153362 784.0514075 630.0236477 879.7459212 0.768893973 0.704421511 0.837335494 0.923678926 0.654098116 0.872518663 0.809114676 0.891224828 0.716142732 1 9.78094311 -9.277071593 0.988889568 1.000814938 0.804849224 0 0.116988867 0.380442717 0.662906606 0.052585543 0.014020297 5.28E-10 9.277071593 -0.195965714 DVGRPQPGR ddPTM_HeLa_CUDC101_4h_R1 1 DVGRPQPGR 9 1 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 0 0 88.37 0.038531 30504000 3035.6 2429.3 2835.5 3201 1993.1 2613 2317.4 2020.3 2850 2300.6 FALSE FALSE TRUE 2679.77157 2504.143854 2988.795707 3331.550616 1846.072984 2563.161379 2406.782894 2250.282786 2732.521794 2286.915929 1.171784033 1.09498728 1.306911054 1.456787534 0.807232553 1.120793881 1.052414242 0.983981421 1.194850129 1 11.15918762 DISLS(ph)DYK ddPTM_HeLa_CUDC101_4h_R1 1 DISLSDYK 8 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 1 0 DIS(0.034)LS(0.965)DY(0.001)K 90.149 0.029134 8924900 3322.2 2864.8 2577.6 2925.6 3171.5 3375.2 2496.7 2336.8 3229.3 2676.7 TRUE FALSE FALSE 2932.776752 2953.061092 2716.952853 3044.918614 2937.544764 3310.823683 2592.998555 2602.811866 3096.186887 2660.778869 1.102224911 1.10984837 1.021111857 1.144371165 1.104016872 1.244306215 0.974526138 0.978214273 1.16363931 1 11.3776329 -9.277032429 0.893751827 0.997289386 1.088536473 0 0.09144326 0.9689615 1.323774149 0.060014185 0.014490885 5.28E-10 9.277032429 0.091247087 DVHTLLDR ddPTM_HeLa_CUDC101_4h_R1 1 DVHTLLDR 8 0 E9PI41;Q9NPD3 E9PI41 EXOSC4 Exosome complex component RRP41 0 0 132.76 0.0048436 10038000 10547 10176 8766.9 9385.8 10050 9008.4 9413.5 9632.9 9957.9 10095 FALSE FALSE TRUE 9310.696648 10489.5105 9240.865132 9768.593493 9308.631522 8836.579779 9776.581848 10729.4704 9547.431147 10034.95449 0.927826495 1.045297266 0.920867667 0.973456681 0.927620701 0.880579955 0.974252734 1.069209672 0.951417483 1 13.29274645 DVIEEYFK ddPTM_HeLa_CUDC101_4h_R1 2 DVIEEYFK 8 0 P25398 P25398 RPS12 40S ribosomal protein S12 0 0 ; ; 123.92 0.037224 39648500 5115.3 4704.6 4669.5 4529.6 4587.3 4587.5 4584.2 4895.9 4810.9 5002.1 FALSE FALSE TRUE 4515.692288 4849.54315 4921.947294 4714.336667 4248.904018 4500.001081 4761.01413 5453.229466 4612.592666 4972.347287 0.908161081 0.975302582 0.989863944 0.948110901 0.854506689 0.905005387 0.957498311 1.096711302 0.927648935 1 12.27971135 -9.631744969 1.46155223 0.999915439 0.944816948 0 0.064921481 0.824901165 3.173782219 0.043836074 0.01005251 2.33E-10 9.631744969 -0.055098491 DVLDVYIEHR ddPTM_HeLa_CUDC101_4h_R1 2 DVLDVYIEHR 10 0 P33993;P33993-2 P33993 MCM7 DNA replication licensing factor MCM7 0 0 ; ; 103.08 0.011935 23201000 22603.1 18317.8 17765.2 18113.6 17018.4 18362.4 15951.6 14260.9 19785.3 23484 FALSE FALSE TRUE 19953.59888 18882.14971 18725.64045 18852.3509 15762.98654 18012.16781 16566.85856 15884.30321 18969.74156 23344.31612 0.854751914 0.808854267 0.802149883 0.807577776 0.675238737 0.77158687 0.709674187 0.680435577 0.812606437 1 14.5107837 -7.772627909 0.167348757 1.141445198 0.584485127 0.466241986 0.065967395 0.727705904 0.097066078 0.161006589 0.12371023 1.69E-08 7.772627909 -0.556960071 DVLLPWYNAYR ddPTM_HeLa_CUDC101_4h_R1 1 DVLLPWYNAYR 11 0 J3KR24;A0A0A0MSX9;P41252 J3KR24 IARS "Isoleucine--tRNA ligase, cytoplasmic" 0 0 128.6 0.013191 8548700 1819.3 1516.4 1010.5 1274.4 1726.9 1533 1273.2 1143.6 1256.3 1448.2 FALSE FALSE TRUE 1606.044412 1563.118487 1065.130687 1326.37554 1599.510027 1503.760579 1322.30775 1273.782801 1204.514782 1439.586042 1.11562933 1.085811088 0.739886784 0.921358989 1.111090258 1.044578466 0.918533323 0.884825751 0.836709128 1 10.4914383 DVLLQVDDER ddPTM_HeLa_CUDC101_4h_R1 1 DVLLQVDDER 10 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 121.61 0.024634 6385700 1324.2 1196.1 1296.8 1130.9 1136.7 1369.7 1278.2 989.9 1322.4 1808.4 FALSE FALSE TRUE 1168.979283 1232.950423 1366.908931 1177.02299 1052.847906 1343.575255 1327.500602 1102.586215 1267.890112 1797.643556 0.650284245 0.685870354 0.760389303 0.654758829 0.58568224 0.747409157 0.738467088 0.613350856 0.705306738 1 10.81189127 -9.276093741 0.737878338 1.02799619 0.678609583 0.075713163 0.10562015 0.261824165 0.223630743 0.056807868 0.011423203 5.30E-10 9.276093741 -0.349386607 DVLLQVDDERR ddPTM_HeLa_CUDC101_4h_R1 4 DVLLQVDDERR 11 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;;; ;;; 235.49 6.48E-43 140666100 15214.6 13059 12747.3 12848.1 12816.4 13130.2 12431.4 12106 13320.8 13236.1 FALSE FALSE TRUE 13431.16765 13461.33231 13436.4576 13372.10105 11870.95971 12879.76331 12910.88326 13484.09811 12771.71099 13157.37109 1.020809367 1.023101972 1.021211419 1.016320127 0.902228844 0.978900969 0.98126618 1.024832242 0.970688666 1 13.68358364 DVMEDAVEDRLDR ddPTM_HeLa_CUDC101_4h_R1 2 DVMEDAVEDRLDR 13 1 R4GMY7;M0R1A1;Q15833-2;Q15833;Q15833-3 R4GMY7 STXBP2 Syntaxin-binding protein 2 0 0 ; ; 150.09 0.00042703 8266600 2372.6 2322.3 2023.17 1962.1 2069.1 1746.04 1908.92 1756.19 1928.27 1853.01 FALSE FALSE TRUE 2094.487425 2393.84731 2132.54869 2042.122919 1916.466615 1712.737196 1982.547684 1956.107571 1848.785894 1841.988214 1.13707971 1.299599689 1.157742853 1.108651458 1.040433701 0.929830703 1.076308561 1.061954445 1.003690404 1 10.84704812 -5.660364822 5.3191745 1.096221614 1.021705395 0.179824912 0.088271479 0.390078394 17.16072163 0.01495871 0.030245897 2.19E-06 5.660364822 -0.074516219 DVMLENYRNLVSLEMR ddPTM_HeLa_CUDC101_4h_R1 1 DVMLENYRNLVSLEMR 16 1 K7EL03 K7EL03 ZNF573 0 0 57.836 0.029903 785460 348.5 225.97 0 0 0 178.08 129.56 176.1 66.696 213.63 FALSE FALSE TRUE 307.6493583 232.9318679 0 0 0 174.6834207 134.5571726 196.1465122 63.94676265 212.3593193 1.448720778 1.096876128 0 0 0 0.8225842 0.633629704 0.923653894 0.301125295 1 7.730363612 -6.87069608 6.75817699 1.214379649 0.392562353 0.213009787 0.438820256 0.128797314 7.28763279 0.060423746 0.079673638 1.35E-07 6.87069608 -0.821817296 HIADLAGNSEVILPVPAFNVINGGS(ph)HAGNK ddPTM_HeLa_CUDC101_4h_R1 1 HIADLAGNSEVILPVPAFNVINGGSHAGNK 30 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;P06733-2 P06733 ENO1 Alpha-enolase;Enolase 1 0 HIADLAGNS(0.305)EVILPVPAFNVINGGS(0.695)HAGNK 87.792 2.63E-07 17242000 908.3 827.56 732.56 818.47 908.98 942.15 912.27 711.89 977.77 1151.6 TRUE FALSE FALSE 801.8304509 853.0561427 772.1644095 851.8507443 841.9263563 924.1800585 947.4565595 792.92868 937.4659067 1144.750232 0.700441396 0.745189753 0.674526537 0.744136774 0.735467295 0.807320263 0.82765352 0.692665228 0.818926156 1 10.16081714 -9.2764569 0.908206872 1.006705406 0.741747062 0.392480599 0.070669939 0.208760699 0.29659833 0.03778156 0.009275144 5.29E-10 9.2764569 -0.264958344 FEEESKEPVADEEEEDS(ph)DDDVEPITEFR ddPTM_HeLa_CUDC101_4h_R1 8 FEEESKEPVADEEEEDSDDDVEPITEFR 28 1 P54105;E9PJF4 P54105 CLNS1A Methylosome subunit pICln 1 0 FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR ;;;;;;; 139.04 2.63E-16 3010991700 27660.4 22014.75 21992.31 21408.32 22220.03 22328.9 20364.72 24905.32 22646.37 11268.9 TRUE FALSE FALSE 24418.08984 22692.99835 23181.2808 22281.44382 20580.90266 21903.01343 21150.19407 27740.44096 21712.87704 11201.87208 2.179822235 2.025821951 2.069411312 1.989082152 1.837273494 1.955299371 1.88809459 2.476411153 1.938325745 1 13.45145224 -9.276177017 0.830144103 0.946415498 2.044227139 0.128889886 0.332441231 0.206459131 0.235612408 0.148987981 0.033503984 5.29E-10 9.276177017 1.09781164 S(ph)AS(ph)PYPSHSLSS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 2 SASPYPSHSLSSPQR 15 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 0 S(0.931)AS(0.98)PY(0.086)PS(0.002)HS(0.001)LS(0.016)S(0.984)PQR;S(0.999)AS(0.993)PY(0.008)PS(0.029)HS(0.366)LS(0.046)S(0.558)PQR ; 123.92 0.0012383 49473000 6388.4 5601.9 5208.8 5232.5 6158.4 6211.7 5720.4 5452.6 6119 6484.7 TRUE FALSE FALSE 5639.561436 5774.487899 5490.403484 5445.903967 5704.107101 6093.222172 5941.037744 6073.301944 5866.77223 6446.128716 0.87487571 0.895807104 0.851736558 0.844833265 0.8848888 0.945252948 0.921644293 0.942162686 0.910123345 1 12.65421728 -9.276045626 0.950097017 1.001468388 0.893418671 0.121093605 0.042070304 0.346832454 0.549461567 0.026042735 0.006686678 5.30E-10 9.276045626 -0.108049717 CSATPSAQVKPIVS(ph)ASPPSR ddPTM_HeLa_CUDC101_4h_R1 1 CSATPSAQVKPIVSASPPSR 20 1 Q96EV2;H0Y3K4 Q96EV2 RBM33 RNA-binding protein 33 1 0 CSATPSAQVKPIVS(0.608)AS(0.38)PPS(0.012)R 110.53 8.09E-05 57616000 1441 1181.6 1385.4 1308 1366.1 1276.3 1371 1257.6 1597 1689 TRUE FALSE FALSE 1272.088164 1218.003695 1460.298915 1361.345894 1265.325525 1251.956704 1423.879929 1400.760101 1531.170984 1678.953753 0.757667185 0.725453988 0.869767206 0.810829894 0.753639296 0.745676706 0.84807573 0.834305351 0.91197925 1 10.71334678 -9.275213237 0.921049195 1.004625649 0.791452067 0.591137962 0.052275163 0.248998681 0.366178791 0.036440668 0.009085867 5.31E-10 9.275213237 -0.213173582 MDSLVVLVLCLSCLLLLS(ph)LWR ddPTM_HeLa_CUDC101_4h_R1 1 MDSLVVLVLCLSCLLLLSLWR 21 0 A0A2R8YF67;P11712-2;P11712 A0A2R8YF67 CYP2C9 Cytochrome P450 2C9 1 0 MDSLVVLVLCLSCLLLLS(1)LWR 43.208 0.038365 14175000 1507.4 1580.9 1419 1497 1486.2 1455.1 1264.1 1399.6 1321.4 3309.3 TRUE FALSE FALSE 1330.704857 1629.605655 1495.715432 1558.054131 1376.565987 1427.346392 1312.85676 1558.924807 1266.931333 3289.616136 0.404516759 0.495378667 0.454677801 0.473627945 0.418457939 0.433894513 0.399091172 0.473892619 0.385130447 1 11.68370353 -9.274941372 0.675874524 1.06508724 0.435271189 0 0.192989233 0.111359776 0.076739902 0.041560826 0.007743476 5.31E-10 9.274941372 -0.629816051 DVNAAIATIK ddPTM_HeLa_CUDC101_4h_R1 2 DVNAAIATIK 10 0 Q9BQE3;F5H5D3;A0A1W2PQM2;P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;P68363;P68363-2;Q71U36-2;Q71U36 Q9BQE3;P68363 TUBA1C;TUBA3E;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain 0 0 ; ; 160.36 0.0063553 2405000 2414.84 1883.7 1694.23 1776.75 2136.48 1766.74 1981.75 2194.69 2163.44 2135.35 FALSE FALSE TRUE 2131.776116 1941.734564 1785.825199 1849.213545 1978.876127 1733.042378 2058.186761 2444.524638 2074.262088 2122.648843 1.004299945 0.914769567 0.841319187 0.871182038 0.93226731 0.816452699 0.969631302 1.15163874 0.977204541 1 11.05165001 -7.262850186 23.00939321 1.002030534 0.920101345 0.099215425 0.087296961 57.11463941 931503.8905 0.014634755 0.017226028 5.46E-08 7.262850186 -0.081929189 GPKPEPPGS(ph)GSPAPPR ddPTM_HeLa_CUDC101_4h_R1 2 GPKPEPPGSGSPAPPR 16 1 Q9UKJ3;Q9UKJ3-2 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 1 0 GPKPEPPGS(0.5)GS(0.5)PAPPR;GPKPEPPGS(0.829)GS(0.171)PAPPR ; 82.859 0.0075574 343577000 7981.8 6759.8 6909.3 6762.9 7880.7 6805.8 6869.5 7293.8 6837.6 7900.9 TRUE FALSE FALSE 7046.185504 6968.061426 7282.837657 7038.720294 7299.356462 6675.990704 7134.458916 8124.096709 6555.751234 7853.905095 0.897156945 0.887209782 0.927288727 0.896206436 0.929391987 0.85002182 0.908396375 1.0344022 0.834712306 1 12.93919445 -9.274891033 0.954033349 1.001114124 0.912329371 0 0.068167682 0.508500121 0.813974164 0.031407656 0.008109635 5.31E-10 9.274891033 -0.088784753 NS(ph)PQSS(ph)PTSTPK ddPTM_HeLa_CUDC101_4h_R1 2 NSPQSSPTSTPK 12 0 Q9Y6Y0 Q9Y6Y0 IVNS1ABP Influenza virus NS1A-binding protein 2 0 NS(1)PQS(0.02)S(0.791)PT(0.101)S(0.067)T(0.02)PK;NS(0.999)PQS(0.007)S(0.683)PT(0.299)S(0.009)T(0.003)PK ; 134.4 0.013713 52943000 17293.9 13839.2 15865.5 12097.6 13786.6 14095.3 14844.4 12657.1 15883.9 8823.4 TRUE FALSE FALSE 15266.73526 14265.56935 16723.23692 12590.99242 12769.58998 13826.45564 15416.95348 14097.9331 15229.15892 8770.918024 1.74060859 1.62646251 1.906668934 1.435538718 1.45590119 1.576397773 1.757735443 1.607349774 1.736324393 1 13.09851214 -9.274648423 0.898424109 0.981700636 1.641168319 0 0.261321096 0.243715051 0.337547036 0.109229869 0.026597311 5.31E-10 9.274648423 0.659467683 S(ph)TSFRGGMGSGGLATGIAGGLAGMGGIQNEK ddPTM_HeLa_CUDC101_4h_R1 8 STSFRGGMGSGGLATGIAGGLAGMGGIQNEK 31 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.406)T(0.155)S(0.406)FRGGMGS(0.027)GGLAT(0.006)GIAGGLAGMGGIQNEK;S(0.217)T(0.217)S(0.217)FRGGMGS(0.175)GGLAT(0.175)GIAGGLAGMGGIQNEK;S(0.31)T(0.31)S(0.31)FRGGMGS(0.059)GGLAT(0.011)GIAGGLAGMGGIQNEK;S(0.427)T(0.138)S(0.427)FRGGMGS(0.007)GGLAT(0.001)GIAGGLAGMGGIQNEK;S(0.295)T(0.295)S(0.272)FRGGMGS(0.077)GGLAT(0.062)GIAGGLAGMGGIQNEK;S(0.307)T(0.307)S(0.284)FRGGMGS(0.054)GGLAT(0.048)GIAGGLAGMGGIQNEK;S(0.31)T(0.31)S(0.294)FRGGMGS(0.044)GGLAT(0.04)GIAGGLAGMGGIQNEK;S(0.278)T(0.278)S(0.278)FRGGMGS(0.082)GGLAT(0.082)GIAGGLAGMGGIQNEK ;;;;;;; 84.388 2.08E-07 725835000 10396.79 10335.53 7456.6 8628.23 12479.71 9412.67 9368.36 11226.64 10963.77 14467.13 TRUE FALSE FALSE 9178.094037 10653.95543 7859.726351 8980.126514 11559.10666 9233.139002 9729.700783 12504.63532 10511.83876 14381.07887 0.638206224 0.740831444 0.546532456 0.624440391 0.80377187 0.64203382 0.676562647 0.869519974 0.730949246 1 13.81188429 -9.274599131 0.885916972 1.010096327 0.685895486 0.105873298 0.120232426 0.315589954 0.422470013 0.069135892 0.016605184 5.31E-10 9.274599131 -0.324200841 DVQGTDASLDEELDR ddPTM_HeLa_CUDC101_4h_R1 4 DVQGTDASLDEELDR 15 0 A0A087WYB4;Q9UJZ1-2;Q9UJZ1 A0A087WYB4 STOML2 "Stomatin-like protein 2, mitochondrial" 0 0 ;;; ;;; 267.77 2.65E-70 60850000 6809.56 5095.01 3985.76 4465.9 4380.22 4600.27 3916.06 3412.79 4186.11 4878.77 FALSE FALSE TRUE 6011.353699 5251.981219 4201.242242 4648.038705 4057.099897 4512.527514 4067.103746 3801.288219 4013.556774 4849.750859 1.239518044 1.082938355 0.866280014 0.958407729 0.836558416 0.930465842 0.838621171 0.783811031 0.827579991 1 12.24369492 -6.795822033 5.089215023 1.115186086 0.872360947 0.251342811 0.115273092 0.101487389 6.376162351 0.015966648 0.021504717 1.60E-07 6.795822033 -0.242825139 DVQGTDASLDEELDRVK ddPTM_HeLa_CUDC101_4h_R1 2 DVQGTDASLDEELDRVK 17 1 A0A087WYB4;Q9UJZ1-2;Q9UJZ1 A0A087WYB4 STOML2 "Stomatin-like protein 2, mitochondrial" 0 0 ; ; 171.29 5.72E-07 14512900 3639.6 2997.3 3377.7 2889.51 4194.6 3455.1 3505.7 4029.1 3260.1 3302.7 FALSE FALSE TRUE 3212.971605 3089.64326 3560.308679 3007.356707 3885.172715 3389.199724 3640.916023 4487.756458 3125.717298 3283.055394 0.978652877 0.941087764 1.084449774 0.916023748 1.183401511 1.032330959 1.109002312 1.366945092 0.952075711 1 11.68082338 -1 0.623610124 0.991398763 27.62065112 0.711304612 0.070017158 63.34648411 0.416496419 0.010705557 2319.728792 0.1 1 26.62925236 DVQIGDIVTVGECRPLSK ddPTM_HeLa_CUDC101_4h_R1 2 DVQIGDIVTVGECRPLSK 18 1 P62280;M0R1H5 P62280 RPS11 40S ribosomal protein S11 0 0 ; ; 136.39 9.41E-05 24180000 1015.41 1241.44 1088.32 1138.87 1161.44 1208.79 951.34 1175.6 1291.79 755.98 FALSE FALSE TRUE 896.3851791 1279.687295 1147.157871 1185.318041 1075.762885 1185.734345 988.0335025 1309.425552 1238.541869 751.4833973 1.192821002 1.70288166 1.526524572 1.577304363 1.431519165 1.577858338 1.314777553 1.7424544 1.648129385 1 9.553597421 -7.442894336 3.701901669 1.079939272 1.539692764 0.083017163 0.216216737 0.083229985 2.075991169 0.021619726 0.024175949 3.61E-08 7.442894336 0.459753492 GREETVAEDVCIDLTCDSGSQAVPS(ph)PATR ddPTM_HeLa_CUDC101_4h_R1 3 GREETVAEDVCIDLTCDSGSQAVPSPATR 29 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GREETVAEDVCIDLTCDSGS(0.003)QAVPS(0.974)PAT(0.023)R;GREETVAEDVCIDLTCDSGS(0.008)QAVPS(0.974)PAT(0.018)R;GREETVAEDVCIDLTCDS(0.004)GS(0.004)QAVPS(0.908)PAT(0.085)R ;; 125.14 5.28E-14 123537000 5713.11 4218.6 4356.99 4455.19 4640.73 4931.22 4702.23 3664.56 5544.58 893.75 TRUE FALSE FALSE 5043.427906 4348.570066 4592.542059 4636.891905 4298.392594 4837.165194 4883.596586 4081.718698 5316.030066 888.4339353 5.676761891 4.894646516 5.169255559 5.219174686 4.838167953 5.444597513 5.496859578 4.594284995 5.983596365 1 9.79512069 -9.274381901 0.784160363 0.714618823 5.214862836 0 1.568258211 0.116525525 0.115705656 0.335473119 0.071587423 5.32E-10 9.274381901 4.500244013 T(ph)YGGS(ph)YGGRGRGRR ddPTM_HeLa_CUDC101_4h_R1 1 TYGGSYGGRGRGRR 14 3 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 0 T(0.928)Y(0.075)GGS(0.864)Y(0.133)GGRGRGRR 92.65 0.00080964 0 1290.3 1163.2 1101.6 1091.3 1249.3 1137.3 1212.5 1117 1371.3 1437.3 TRUE FALSE FALSE 1139.05299 1199.036813 1161.155828 1135.807931 1157.141628 1115.607897 1259.266531 1244.154765 1314.774434 1428.750876 0.79723695 0.839220352 0.812706993 0.794965694 0.809897406 0.780827446 0.88137586 0.870798952 0.920226511 1 10.48053867 -9.274248956 0.836145736 1.008682283 0.82093574 0.643721966 0.038938244 0.230434612 0.267903371 0.02851249 0.006474253 5.32E-10 9.274248956 -0.187746543 DVSYQGGK(ac)SIK ddPTM_HeLa_CUDC101_4h_R1 2 DVSYQGGKSIK 11 1 Q8NEZ4;Q8NEZ4-3;H0YMU7 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 0 1 ; DVSYQGGK(1)SIK;DVSYQGGK(1)SIK 174.24 0.00018589 4824500 1321.24 1109.28 1297.24 1089.21 956.21 1167.27 1613.29 1308.49 1126.33 1191.51 FALSE TRUE FALSE 1166.36625 1143.455602 1367.372718 1133.632692 885.6722933 1145.00627 1675.515136 1457.443213 1079.902201 1184.422846 0.984754942 0.96541164 1.15446331 0.957118225 0.747766979 0.966720858 1.414625817 1.230509204 0.911753944 1 10.20996851 -4.769508891 24.99936118 0.980799839 1.322567526 0.6570086 0.10371128 70.14330656 217306.9205 0.014018443 0.043146301 1.70E-05 4.769508891 0.341767686 QPPGPVPT(ph)PPLPSER ddPTM_HeLa_CUDC101_4h_R1 1 QPPGPVPTPPLPSER 15 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QQI0 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 QPPGPVPT(1)PPLPSER 103.67 0.020597 8610700 480.13 409.11 432.9 478.62 402.65 416.8 311.59 532.46 559.16 543.73 TRUE FALSE FALSE 423.8498892 421.7141942 456.3038835 498.1401924 372.9473117 408.8502344 323.6081307 593.0730941 536.1111881 540.4958698 0.784187101 0.780235739 0.844231952 0.921635521 0.69000955 0.756435446 0.598724521 1.097275904 0.991887669 1 9.078139783 -9.273129149 0.701610693 1.020835728 0.797517347 0.252635745 0.126910082 0.952596559 0.720041173 0.12857708 0.024806861 5.33E-10 9.273129149 -0.223318382 T(ph)EEAAADTALT(ph)IMEVAEVES(ph)PLNPS(ph)CK ddPTM_HeLa_CUDC101_4h_R1 1 TEEAAADTALTIMEVAEVESPLNPSCK 27 0 Q9H3R0-4 Q9H3R0-4 4 0 T(0.996)EEAAADT(0.133)ALT(0.88)IMEVAEVES(0.996)PLNPS(0.996)CK 41.76 0.020061 2049800 231.85 357.49 415.99 623.1 1068.5 548.58 473.99 408.19 791.54 2622.6 TRUE FALSE FALSE 204.6728945 368.5038432 438.4796777 648.5127113 989.6788838 538.1167505 492.2719531 454.6566996 758.9123862 2607.000659 0.078508954 0.141351649 0.16819316 0.248758169 0.379623565 0.206412204 0.188826939 0.174398383 0.29110556 1 11.34817523 -9.27257448 0.8804627 1.027074552 0.196559751 0.172041521 0.227668064 0.133335075 0.175986471 0.074580597 0.017854354 5.34E-10 9.27257448 -0.830514801 S(ph)IQFVDWCPTGFK ddPTM_HeLa_CUDC101_4h_R1 1 SIQFVDWCPTGFK 13 0 P68363;P68363-2;P68366-2;P68366 P68363;P68366-2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain 1 0 S(1)IQFVDWCPTGFK 156 9.06E-05 34746000 2910.9 2257.8 2441.8 2237.5 2607.1 2562.4 2080 2462.8 2248.2 1338.5 TRUE FALSE FALSE 2569.688715 2327.360142 2573.811094 2328.754921 2414.779427 2513.526489 2160.226297 2743.155197 2155.528244 1330.538542 1.931314752 1.749186564 1.93441303 1.750234846 1.814888746 1.889104606 1.623572883 2.061687888 1.620041942 1 10.37779459 -9.270906281 0.776073962 0.941025061 1.843470865 0.373136567 0.221319922 0.181356838 0.175856406 0.104071782 0.022096721 5.36E-10 9.270906281 0.902445804 DVTNNVHYENYR ddPTM_HeLa_CUDC101_4h_R1 2 DVTNNVHYENYR 12 0 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181 G3V1Q4 7-Sep Septin-7 0 0 ; ; 117.03 0.003687 47664000 7761.8 6093.2 4957.7 5876 5636.5 5945 5577 5583.4 4736.1 4746.4 FALSE FALSE TRUE 6851.97357 6280.92427 5225.728258 6115.648678 5220.706624 5831.60903 5792.106758 6218.991687 4540.875953 4718.168202 1.452252925 1.331220932 1.10757566 1.296191322 1.106511341 1.235990067 1.227617692 1.318094528 0.9624235 1 12.20401114 -9.604641452 1.426511541 1.001011372 1.27941493 0.538938357 0.100643038 0.308405794 1.132857931 0.080813771 0.018940932 2.49E-10 9.604641452 0.278403558 GY(ph)ILVGQAKLS(ph)CS(ph)YSHWS(ph)APAPQCK ddPTM_HeLa_CUDC101_4h_R1 1 GYILVGQAKLSCSYSHWSAPAPQCK 25 1 P04003 P04003 C4BPA C4b-binding protein alpha chain 4 0 GY(0.999)ILVGQAKLS(0.95)CS(0.403)Y(0.366)S(0.336)HWS(0.945)APAPQCK 45.88 0.0024654 0 0 172.62 234.61 144.33 142.42 184.19 181.03 45.178 0 1454.1 TRUE FALSE FALSE 0 177.9382176 247.2937263 150.2164012 131.9139603 180.6768826 188.0123877 50.3208809 0 1445.450949 0 0.123102218 0.171084136 0.103923555 0.091261458 0.124996897 0.130071787 0.034813275 0 1 10.49730394 -9.270230967 0.774327455 1.063996026 0.092896459 0 0.311584672 0.09897693 0.095477498 0.061040039 0.012944605 5.37E-10 9.270230967 -0.971099567 DVVICPDASLEDAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 DVVICPDASLEDAKK 15 1 Q99497;K7ELW0;K7EN27 Q99497 PARK7 Protein deglycase DJ-1 0 1 DVVICPDASLEDAK(1)K 196.57 2.90E-15 396290 141.42 199.31 0 130.53 232.98 249.09 0 206.07 220.03 0 FALSE TRUE FALSE 124.842962 205.4505049 0 135.8535776 215.7935296 244.3390233 0 229.5281758 210.9602703 0 0 DVVICPDASLEDAKK ddPTM_HeLa_CUDC101_4h_R1 2 DVVICPDASLEDAKK 15 1 Q99497;K7ELW0;K7EN27 Q99497 PARK7 Protein deglycase DJ-1 0 0 ; ; 106.3 0.0034047 44775000 5078.5 4803.3 4144.5 4470.7 4981.9 4063.6 3996.7 4234.5 4420.3 3252.6 FALSE FALSE TRUE 4483.205929 4951.28398 4368.564206 4653.03447 4614.395162 3986.0936 4150.854058 4716.538364 4238.093363 3233.253391 1.386592818 1.531362804 1.351135738 1.439118407 1.427167811 1.232842935 1.283801038 1.458759272 1.310782933 1 11.65877086 -9.060001346 0.813096926 0.996080866 1.385653517 0.235957841 0.124075065 0.257210723 0.305639775 0.060754083 0.01769211 8.71E-10 9.060001346 0.389572651 S(ph)VTLEEAIAEQNESER ddPTM_HeLa_CUDC101_4h_R1 1 SVTLEEAIAEQNESER 16 0 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;H7C231 H7BYY2 BCOR BCL-6 corepressor 1 0 S(0.996)VT(0.004)LEEAIAEQNESER 147.53 0.00021948 2195500 457.58 380.02 498.57 372.91 370.93 251.15 375.28 433.58 608.54 1007.1 TRUE FALSE FALSE 403.943166 391.7279658 525.5242023 388.1188817 343.5672329 246.3597322 389.7546753 482.9369946 583.4557236 1001.109724 0.403495397 0.391293738 0.524941662 0.387688654 0.343186391 0.246086644 0.389322634 0.482401662 0.582808966 1 9.967384391 -9.270026467 0.528259772 1.126228473 0.371720768 0.439954585 0.147154702 0.309275913 0.118825641 0.119534032 0.01888073 5.37E-10 9.270026467 -0.754507705 KVVEAVNS(ph)DSDS(ph)EFGIPK ddPTM_HeLa_CUDC101_4h_R1 1 KVVEAVNSDSDSEFGIPK 18 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 2 0 KVVEAVNS(0.57)DS(0.481)DS(0.949)EFGIPK 69.27 0.01044 58663000 2595.1 2254.6 2167.1 2182 2367.4 2575.9 2337.1 1645 2373.9 2883.2 TRUE FALSE FALSE 2290.906312 2324.061554 2284.259981 2270.991391 2192.761619 2526.768999 2427.24273 1832.260151 2276.046837 2866.050598 0.799325146 0.810893414 0.79700616 0.792376587 0.765081265 0.881620513 0.846894584 0.639297908 0.794140494 1 11.48484836 -9.269036394 0.536003242 1.041152491 0.789667163 0 0.087385447 0.694510483 0.276119687 0.090265134 0.014384511 5.38E-10 9.269036394 -0.251485328 DVVQAYPEVR ddPTM_HeLa_CUDC101_4h_R1 2 DVVQAYPEVR 10 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 ; ; 83.998 0.034711 75335000 7016.6 6050.3 5954.3 6058.7 6140.8 5905.9 5702.5 5314.1 5897.3 6400.4 FALSE FALSE TRUE 6194.124784 6236.702572 6276.207469 6305.799974 5687.805418 5793.254797 5922.447335 5919.035664 5654.210798 6362.330136 0.973562304 0.980254473 0.986463659 0.991114865 0.893981497 0.910555516 0.930861368 0.930325138 0.888701258 1 12.63533952 -5.770995837 24.99502638 0.986757059 0.917041959 0.32198742 0.033116549 51.87009551 135667.0433 0.002088612 0.003821704 1.69E-06 5.770995837 -0.069715099 DVYEEFDEK ddPTM_HeLa_CUDC101_4h_R1 1 DVYEEFDEK 9 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 0 0 154.84 0.0011544 4204300 1484.2 1191.3 1295.6 1175.3 1114.8 1028.5 908.14 910.4 1207 1489.1 FALSE FALSE TRUE 1310.224326 1228.002541 1365.644055 1223.233814 1032.563425 1008.883076 943.167264 1014.036256 1157.246949 1480.242767 0.885141515 0.829595367 0.922581137 0.826373782 0.697563567 0.681565956 0.637170662 0.685047263 0.781795375 1 10.53161809 -5.424869654 0.272166741 1.002975168 0.479509171 0.538034626 0.076939935 1.161151437 0.113804544 0.033355259 0.198012826 3.76E-06 5.424869654 -0.523465997 HLLS(ph)PQLVQYQCGDSGK ddPTM_HeLa_CUDC101_4h_R1 4 HLLSPQLVQYQCGDSGK 17 0 Q9P209 Q9P209 CEP72 Centrosomal protein of 72 kDa 1 0 HLLS(1)PQLVQYQCGDSGK;HLLS(1)PQLVQYQCGDSGK;HLLS(1)PQLVQYQCGDSGK;HLLS(1)PQLVQYQCGDSGK ;;; 189.9 2.53E-11 143156000 9170.78 8097.95 8069.7 6949.17 8474.63 7125.88 6409.2 5753.89 8263.56 4467.57 TRUE FALSE FALSE 8095.79507 8347.438241 8505.972392 7232.587189 7849.473429 6989.965712 6656.404991 6408.88958 7922.932559 4440.996695 1.822968047 1.879631717 1.915329593 1.62859549 1.76750265 1.573963277 1.498853849 1.443119646 1.784043786 1 12.11666778 -9.268724879 0.978315689 0.996611966 1.699527647 0 0.281463289 0.240300707 0.409395893 0.11827403 0.031559258 5.39E-10 9.268724879 0.702915682 DVYLSPR ddPTM_HeLa_CUDC101_4h_R1 2 DVYLSPR 7 0 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 0 ; ; 112.17 0.0016583 0 11949 9802.6 8869.4 9456.7 10156.8 9839.9 9189.9 9199 10076.9 10265.7 FALSE FALSE TRUE 10548.35633 10104.60649 9348.906592 9842.385101 9407.553099 9652.220302 9544.357521 10246.17698 9661.525917 10204.63916 1.033682443 0.990197334 0.91614279 0.964501042 0.921889834 0.94586591 0.935295935 1.004070484 0.94677781 1 13.31693755 -6.961888198 6.004679104 1.015758226 0.947023512 0.237025037 0.032592611 0.086005183 8.256949799 0.003947058 0.005172905 1.09E-07 6.961888198 -0.068734714 SAYQEYDS(ph)DSDVPEELK ddPTM_HeLa_CUDC101_4h_R1 1 SAYQEYDSDSDVPEELK 17 0 H0Y7Q2;Q96JG6-3;Q96JG6 H0Y7Q2 CCDC132 Coiled-coil domain-containing protein 132 1 0 SAYQEYDS(0.962)DS(0.038)DVPEELK 136.35 0.00022457 10259000 361.79 490.29 376.11 414.71 534.79 419.85 434.49 225.75 485.65 1487 TRUE FALSE FALSE 319.3815246 505.3952538 396.4436443 431.6236663 495.3396072 411.8420608 451.2484248 251.4484675 465.6313014 1478.155258 0.216067644 0.341909452 0.268201626 0.292001577 0.335106617 0.278618947 0.305278097 0.170109646 0.315008386 1 10.5295821 -9.268700181 0.72222261 1.066899835 0.271810451 0.045048681 0.216627113 0.119411882 0.097138969 0.058198671 0.011593854 5.39E-10 9.268700181 -0.795089384 DWDDDQND ddPTM_HeLa_CUDC101_4h_R1 1 DWDDDQND 8 0 P50990-3;P50990-2;P50990;H7C2U0 P50990-3 CCT8 T-complex protein 1 subunit theta 0 0 122.78 0.038417 93882000 10038 8956.7 8527.5 8528.6 9890.9 8553.9 8089.5 9412.5 9430.9 10133 FALSE FALSE TRUE 8861.360857 9232.645311 8988.522444 8876.433172 9161.268012 8390.748609 8401.514725 10483.98095 9042.15431 10072.72847 0.879737887 0.916598253 0.892362231 0.881234236 0.90951206 0.83301646 0.834085298 1.040828311 0.897686693 1 13.29816691 -9.304360688 0.771202241 1.00863867 0.892795018 0 0.06322033 0.690038557 0.64745879 0.05116995 0.010305173 4.96E-10 9.304360688 -0.115843652 EPGSGGPQNLS(ph)GPGGR ddPTM_HeLa_CUDC101_4h_R1 2 EPGSGGPQNLSGPGGR 16 0 M0QZH1;M0QX70;M0QYR7;M0R2N0;M0QZC7;Q9H0W8-2;Q9H0W8 M0QZH1 SMG9 Protein SMG9 1 0 EPGSGGPQNLS(1)GPGGR;EPGSGGPQNLS(1)GPGGR ; 161.08 5.10E-09 0 1152.04 985.2 962.21 1153.76 1098.54 755.16 997.44 1106.41 1179.28 1176.26 TRUE FALSE FALSE 1016.999618 1015.552844 1014.229983 1200.81532 1017.502893 740.7565812 1035.911595 1232.359242 1130.669579 1169.263553 0.869777917 0.86854058 0.867409217 1.026984307 0.870208338 0.63352405 0.885952181 1.053961905 0.966992921 1 10.19138444 -9.268473588 0.707012511 1.012133018 0.877800924 0.114651747 0.10694728 1.426663105 1.10164265 0.116170569 0.02271126 5.39E-10 9.268473588 -0.134332094 EGPEPPEEVPPPT(ph)TPPVPK ddPTM_HeLa_CUDC101_4h_R1 4 EGPEPPEEVPPPTTPPVPK 19 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 EGPEPPEEVPPPT(0.5)T(0.5)PPVPK;EGPEPPEEVPPPT(0.797)T(0.203)PPVPK;EGPEPPEEVPPPT(0.5)T(0.5)PPVPK;EGPEPPEEVPPPT(0.934)T(0.066)PPVPK ;;; 149.19 0.00020496 112348800 22559.6 20011.7 19635.2 18806.7 19955 19343 20543.7 18348.2 20359.9 24987.5 TRUE FALSE FALSE 19915.19789 20628.23676 20696.73831 19573.71852 18482.95941 18974.0645 21336.07739 20436.88492 19520.6563 24838.87324 0.801775414 0.830481985 0.833239822 0.788027634 0.744114245 0.763885878 0.858979278 0.822778261 0.785891377 1 14.60031211 -9.267985408 0.573409096 1.033969886 0.799368112 0 0.073927797 0.395959359 0.184446189 0.050009294 0.008305337 5.40E-10 9.267985408 -0.234601774 DWEDDSDEDMSNFDR ddPTM_HeLa_CUDC101_4h_R1 6 DWEDDSDEDMSNFDR 15 0 B4DDC6;A0A087WYT3;Q15185-2;Q15185-4;Q15185 B4DDC6 PTGES3 Prostaglandin E synthase 3 0 0 ;;;;; ;;;;; 401.44 0 305259500 11535.6 9535.77 8208.29 9084.04 9287 8506.65 7742.16 7850.78 10006 11472.33 FALSE FALSE TRUE 10183.41445 9829.555771 8652.054986 9454.526416 8601.916512 8344.399824 8040.777705 8744.481061 9593.548445 11404.09207 0.892961438 0.861932341 0.758679861 0.829046833 0.754283327 0.73170225 0.705078287 0.766784502 0.841237372 1 13.47726397 -7.20923413 0.385939321 1.004457358 0.708635027 0.573360364 0.055265443 0.197261701 0.080423128 0.017134155 0.020906129 6.18E-08 7.20923413 -0.295822331 DWEQFHQPR ddPTM_HeLa_CUDC101_4h_R1 3 DWEQFHQPR 9 0 Q9H773 Q9H773 DCTPP1 dCTP pyrophosphatase 1 0 0 ;; ;; 138.08 0.00029124 40926000 24058.8 20548.7 21200.4 19289.6 20214 21182.6 18828.1 18464.1 22505.2 24396.2 FALSE FALSE TRUE 21238.66393 21181.78109 22346.55775 20076.31326 18722.85349 20778.5772 19554.30612 20565.97851 21577.52613 24251.09032 0.875781817 0.873436238 0.921466106 0.827851985 0.77204172 0.856810021 0.806326885 0.848043459 0.889754887 1 14.56576199 -9.722140714 0.212376326 1.134223915 0.799325097 0.369237433 0.047642881 3.195681709 0.176684242 0.292493031 0.044511138 1.90E-10 9.722140714 -0.334898817 DWGEHNQR ddPTM_HeLa_CUDC101_4h_R1 2 DWGEHNQR 8 0 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 0 0 ; ; 163.15 0.00061677 13266500 8862.2 4835.3 8742.8 9648 7476.9 6271.7 7218.4 4070 8597.8 9898.5 FALSE FALSE TRUE 7823.38635 4984.269862 9215.462214 10041.48714 6925.343983 6152.077772 7496.816106 4533.312348 8243.395045 9839.623282 0.795090028 0.506550883 0.936566569 1.020515405 0.703822066 0.625235092 0.761900724 0.460720113 0.837775473 1 13.26438737 -8.952867679 0.051572319 1.796732003 8.35E-16 0.243792078 0.16006783 89.30914337 1.393270111 28.79928215 19.88332086 1.11E-09 8.952867679 -1.796732003 DWILPSDYDHAEAEAR ddPTM_HeLa_CUDC101_4h_R1 4 DWILPSDYDHAEAEAR 16 0 O43852;O43852-3;O43852-15;O43852-2;O43852-4;H0Y875;O43852-5;O43852-9 O43852 CALU Calumenin 0 0 ;;; ;;; 249.41 7.15E-56 107193000 18374.1 13455.8 12311.8 12320.3 14840.2 16268.1 12493.2 11999 15078.5 20020.9 FALSE FALSE TRUE 16220.31585 13870.35725 12977.41315 12822.77509 13745.46801 15957.8131 12975.06691 13364.91766 14456.95785 19901.8148 0.815016923 0.696939319 0.652071848 0.6443018 0.69066405 0.801827032 0.651953957 0.671542661 0.726414048 1 14.28061237 -8.059951227 0.680148331 0.982006908 0.68127348 0.222994608 0.092705554 0.17265138 0.178003355 0.021665213 0.014232786 8.71E-09 8.059951227 -0.300733428 DWLWGGCGDNIDYGYR ddPTM_HeLa_CUDC101_4h_R1 1 DWLWGGCGDNIDYGYR 16 0 C9J8I8;P41221-2;P41221 C9J8I8 WNT5A Protein Wnt;Protein Wnt-5a 0 0 109.6 0.0098921 9556300 820.98 999 671.35 679.63 797.9 1040.6 841.97 523.34 686.56 651.2 FALSE FALSE TRUE 724.7459689 1029.778006 707.6452117 707.348249 739.0405066 1020.752289 874.4450649 582.9149102 658.2597062 647.3266334 1.119598564 1.59081668 1.093181054 1.092722302 1.141680982 1.576873615 1.350855997 0.900495793 1.016889577 1 9.338350053 -7.49966296 13.19986448 1.052712711 1.257337735 0.178260462 0.205153089 1.527197258 867.2822701 0.035484784 0.0386111 3.16E-08 7.49966296 0.204625024 DWQSYYYHHPQDR ddPTM_HeLa_CUDC101_4h_R1 2 DWQSYYYHHPQDR 13 0 Q1KMD3 Q1KMD3 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 0 ; ; 106.58 0.004215 50474000 13625.6 9820.4 8105.6 8939.3 12238.8 11578.4 10881.6 7945.9 11101.9 9426.9 FALSE FALSE TRUE 12028.42782 10122.95488 8543.813254 9303.883293 11335.96811 11357.56131 11301.30696 8850.429138 10644.27498 9370.82838 1.28360347 1.080262542 0.911745783 0.992856012 1.209708219 1.212012519 1.206009384 0.944466036 1.135894774 1 13.19396087 -4.242211628 22.99214543 1.122487179 0.944465548 0.16763998 0.112578281 2351.518469 2811761.353 0.019201104 0.818958311 5.73E-05 4.242211628 -0.17802163 DWSHYFK ddPTM_HeLa_CUDC101_4h_R1 2 DWSHYFK 7 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 116.54 0.011611 47140000 54272 39960 29214 35356 36878 35849 37347 39188 30221 36781 FALSE FALSE TRUE 47910.31843 41191.12024 30793.39721 36797.9705 34157.58341 35165.24005 38787.4863 43649.00352 28975.27759 36562.22498 1.31037754 1.126603216 0.842218908 1.006447789 0.934231531 0.961791578 1.060862306 1.19382788 0.792492186 1 15.15806625 -6.970452626 24.93013854 1.150352626 0.997095574 0 0.157581814 238.45636 201193.3912 0.022899373 0.030095437 1.07E-07 6.970452626 -0.153257052 RSNVSS(ph)PATPTASSSSSTTPTR ddPTM_HeLa_CUDC101_4h_R1 2 RSNVSSPATPTASSSSSTTPTR 22 1 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 RS(0.004)NVS(0.093)S(0.899)PAT(0.004)PTASSSSSTTPTR;RS(0.038)NVS(0.329)S(0.628)PAT(0.004)PTASSSSSTTPTR ; 135.63 1.94E-07 6883400 1267.12 1075.84 1115.08 1021.39 1270.77 1126.94 1107.39 1353.29 1441.79 1451.61 TRUE FALSE FALSE 1118.590114 1108.985355 1175.364598 1063.046699 1177.027829 1105.445497 1150.102403 1507.343063 1382.358806 1442.975759 0.775196747 0.76854053 0.814542164 0.736704475 0.815694804 0.766087365 0.797035152 1.044607336 0.957991704 1 10.49483135 -9.267257905 0.945880221 1.002528896 0.807184084 0.384034275 0.082061712 0.418491937 0.658207689 0.056516692 0.014621682 5.40E-10 9.267257905 -0.195344812 TQS(ph)ASPPPKER ddPTM_HeLa_CUDC101_4h_R1 2 TQSASPPPKER 11 1 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 T(0.002)QS(0.533)AS(0.465)PPPKER;T(0.003)QS(0.696)AS(0.301)PPPKER ; 77.527 0.025062 205407000 7963.2 5428.8 8810.8 8472.6 8039.2 6797 7406.2 5075.7 9003.1 9132.6 TRUE FALSE FALSE 7029.765767 5596.054893 9287.138499 8818.14925 7446.164232 6667.35855 7691.859615 5653.497171 8631.988407 9078.278889 0.774350056 0.616422448 1.023006521 0.97134593 0.820217612 0.7344298 0.847281705 0.622749889 0.950839748 1 13.14820309 -9.267251157 0.971209618 1.001353694 0.807131812 0.234767051 0.124192794 0.643259264 1.077648241 0.087202839 0.023149981 5.40E-10 9.267251157 -0.194221882 CSPT(ph)VAFVEFPSS(ph)PQLK ddPTM_HeLa_CUDC101_4h_R1 1 CSPTVAFVEFPSSPQLK 17 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 2 0 CS(0.273)PT(0.727)VAFVEFPS(0.089)S(0.911)PQLK 140.89 0.00072737 5584800 1670.4 1602.4 1499.1 1676.2 1641.6 1817.9 1856 1360.9 1935.5 2981.4 TRUE FALSE FALSE 1474.598244 1651.768045 1580.145881 1744.562681 1520.502439 1783.226586 1927.586542 1515.819355 1855.717871 2963.6665 0.497558765 0.557339378 0.533172636 0.588650134 0.513047753 0.601696104 0.650406023 0.511467588 0.626156104 1 11.5331674 -9.267131151 0.850135543 1.018694532 0.556415312 0.235627339 0.122056879 0.137201353 0.16666721 0.042004792 0.009789529 5.41E-10 9.267131151 -0.46227922 DYAFIHFDER ddPTM_HeLa_CUDC101_4h_R1 4 DYAFIHFDER 10 0 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 0 ;;; ;;; 128.35 0.0056934 153650000 37145.1 31934.7 30402.9 31759.2 32037 31287.6 29478.4 29007.9 31440.2 35593.6 FALSE FALSE TRUE 32791.00769 32918.57026 32046.57274 33054.47745 29673.69434 30690.84116 30615.39176 32310.04208 30144.22165 35381.88768 0.926773834 0.930379141 0.905733833 0.934220292 0.838669056 0.867416726 0.865284296 0.913180279 0.851967592 1 15.1107234 -8.165438845 0.269707181 1.027902334 0.861088615 0 0.052012019 0.829499072 0.163292682 0.052915994 0.026559132 6.83E-09 8.165438845 -0.166813719 DYAFVHFEDR ddPTM_HeLa_CUDC101_4h_R1 3 DYAFVHFEDR 10 0 O43390;B4DT28;O43390-4;O43390-3;O43390-2;A0A286YEZ8 O43390 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 0 ;; ;; 117.14 0.001515 193216000 24281.1 22604.9 21838.8 21677.6 21575 21892.8 20625.7 19479.5 20644.3 24244.2 FALSE FALSE TRUE 21434.90627 23301.33018 23019.47159 22561.70623 19983.45523 21475.23132 21421.24016 21696.96754 19793.33322 24099.99442 0.889415404 0.966860397 0.955165017 0.9361706 0.829189206 0.891088643 0.888848345 0.900289318 0.821300324 1 14.55674519 -5.92349991 8.691258422 0.948561647 0.879264529 0.128830035 0.050893627 0.239922601 24.68989858 0.006508409 0.011819115 1.19E-06 5.92349991 -0.069297118 DYAFVHMER ddPTM_HeLa_CUDC101_4h_R1 3 DYAFVHMER 9 0 E9PB51;Q9BWF3;D6R9K7;J3QRR5;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BQ04;E9PLB0;E9PM61;U3KQD5 E9PB51;Q9BQ04 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B 0 0 ;; ;; 121.6 0.0049117 19975300 25038.5 22134.4 19808.6 21883.1 21904.5 21369.5 17817.8 16844.5 21719.4 20170.3 FALSE FALSE TRUE 22103.52499 22816.33463 20879.51283 22775.5874 20288.64867 20961.91239 18505.03851 18762.00979 20824.11714 20050.32616 1.102402266 1.137953291 1.041355271 1.135921043 1.011886216 1.045464908 0.922929551 0.935745865 1.038592439 1 14.29133808 -4.797363027 4.689107457 1.05925976 0.927786278 0.584349856 0.045410252 0.11718137 5.853667624 0.007547107 0.025673585 1.59E-05 4.797363027 -0.131473481 IMSCS(ph)PDTQCSR ddPTM_HeLa_CUDC101_4h_R1 2 IMSCSPDTQCSR 12 0 Q9C0C9;K7EQ12 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 IMS(0.003)CS(0.872)PDT(0.125)QCSR;IMS(0.083)CS(0.89)PDT(0.027)QCSR ; 131.08 0.0015292 47810000 3075.6 2693.8 2358.28 2480.85 2395.02 2530.11 2056.72 2049.63 2578.48 934.61 TRUE FALSE FALSE 2715.08283 2776.792785 2485.77575 2582.029786 2218.344146 2481.852367 2136.048379 2282.951594 2472.193963 929.0508982 2.922426355 2.988848932 2.675607714 2.779212411 2.387753083 2.671384713 2.299172611 2.457294427 2.660988723 1 9.859613827 -9.266992475 0.932110152 0.971888097 2.655895073 0 0.545743488 0.157672229 0.239437239 0.18253866 0.046569146 5.41E-10 9.266992475 1.684006976 DYDAMGSQTK ddPTM_HeLa_CUDC101_4h_R1 1 DYDAMGSQTK 10 0 Q9Y230;Q9Y230-2;M0R0Y3 Q9Y230 RUVBL2 RuvB-like 2 0 0 113.71 0.034054 22300000 1445.6 1493.3 1326.4 1299.4 1346.8 1357.3 1531.2 1461 1370.9 1399.2 FALSE FALSE TRUE 1276.148959 1539.306803 1398.109196 1352.395148 1247.449247 1331.411764 1590.258897 1627.314334 1314.390922 1390.877496 0.917513557 1.106716305 1.00519938 0.972332324 0.896879309 0.957245888 1.143349361 1.169991131 0.945008403 1 10.44177964 -4.73746075 6.551017627 0.969773542 1.159479049 0.636421091 0.054805035 0.080710308 11.88331839 0.00822798 0.029962449 1.83E-05 4.73746075 0.189705507 INHTVILDDPFDDPPDLLIPDRSPEPT(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 INHTVILDDPFDDPPDLLIPDRSPEPTR 28 1 Q8WUA2 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 1 0 INHTVILDDPFDDPPDLLIPDRS(0.408)PEPT(0.592)R;INHTVILDDPFDDPPDLLIPDRS(0.355)PEPT(0.645)R ; 91.115 1.88E-07 156036000 2022.87 1733.13 1814.59 1542.68 1984.41 1898.05 1951.64 1736.51 2088.9 2197.96 TRUE FALSE FALSE 1785.752245 1786.525681 1912.692224 1605.597158 1838.024028 1861.847859 2026.915409 1934.187279 2002.794658 2184.886436 0.817320395 0.817674389 0.875419515 0.734865269 0.841244651 0.852148573 0.927698289 0.88525758 0.91665847 1 11.09334258 -9.266596713 0.924809185 1.002970749 0.84237107 0.38509567 0.054037415 0.342816991 0.510919694 0.037730584 0.009557055 5.41E-10 9.266596713 -0.160599678 DYDDMSPR ddPTM_HeLa_CUDC101_4h_R1 1 DYDDMSPR 8 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 137.9 0.026347 156010000 6073.5 5694.8 5603.4 6031.6 6661.5 5393.4 6164.9 6286.1 5926.2 6059 FALSE FALSE TRUE 5361.573537 5870.250038 5906.336753 6277.594719 6170.094417 5290.529881 6402.682258 7001.684215 5681.919528 6022.960799 0.890189014 0.974645234 0.980636758 1.0422772 1.024428786 0.878393544 1.063045647 1.162498719 0.943376475 1 12.55625715 -4.533703402 4.934374051 0.959739991 1.14356282 0.598619201 0.050553345 0.09264761 6.250664007 0.008249752 0.037831082 2.93E-05 4.533703402 0.183822829 RRPRDQS(ph)LS(ph)PS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 RRPRDQSLSPSK 12 3 Q5TCQ9;Q5TCQ9-1 Q5TCQ9 MAGI3 "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3" 3 0 RRPRDQS(1)LS(1)PS(1)K 53.981 0.035883 6007200 0 0 0 0 0 0 54.904 0 0 51.252 TRUE FALSE FALSE 0 0 0 0 0 0 57.02166567 0 0 50.94715082 0 0 0 0 0 0 1.119231689 0 0 1 5.670929562 -9.266479447 0.953359871 1.009322269 0.143683906 0 0.449822805 0.402221982 0.644851939 0.241330055 0.062984212 5.41E-10 9.266479447 -0.865638363 DPALCQHKPLT(ph)PQGDELSEPR ddPTM_HeLa_CUDC101_4h_R1 1 DPALCQHKPLTPQGDELSEPR 21 1 K7EQL6;Q8NFA0 K7EQL6 USP32 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 32 1 0 DPALCQHKPLT(0.985)PQGDELS(0.015)EPR 66.636 0.0046568 5990100 1580.1 1309.7 1364.6 1120.6 1740 1302.5 1287.8 1267.1 1124.1 1157.3 TRUE FALSE FALSE 1394.883073 1350.050305 1438.374404 1166.302912 1611.643667 1277.656983 1337.470877 1411.341542 1077.764122 1150.416328 1.212502847 1.173531939 1.250307709 1.013809421 1.400922107 1.110604006 1.162597266 1.22680938 0.936847032 1 10.16794034 -9.266443173 0.758702194 0.985271879 1.194368844 0.455456134 0.096655539 0.630462101 0.579564979 0.082797117 0.017315001 5.41E-10 9.266443173 0.209096965 DYDRNPPR ddPTM_HeLa_CUDC101_4h_R1 1 DYDRNPPR 8 1 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6 A0A087X0H9 RBM26 RNA-binding protein 26 0 0 96.19 0.027781 2175800 872.82 719.25 752.39 879.75 827.74 680.38 851.71 737.08 835.79 967.57 FALSE FALSE TRUE 770.5093627 741.40924 793.0664793 915.6300076 766.6792693 667.4028851 884.56074 820.9862078 801.3383824 961.8148506 0.801099465 0.770844035 0.824552125 0.951981566 0.797117313 0.693899543 0.919678813 0.853580299 0.833152433 1 9.909615392 -9.249213637 0.909211547 1.00343949 0.825689143 0.016379812 0.085447078 0.433204478 0.62410021 0.052076052 0.013281809 5.63E-10 9.249213637 -0.177750348 SAS(ph)PSSQGWQGR ddPTM_HeLa_CUDC101_4h_R1 1 SASPSSQGWQGR 12 0 X6R7H2;Q5VV67-2;Q5VV67 X6R7H2 PPRC1 Peroxisome proliferator-activated receptor gamma coactivator-related protein 1 1 0 S(0.301)AS(0.675)PS(0.018)S(0.006)QGWQGR 78.985 0.037301 5311900 1977.5 1541.2 2066.1 1875 1912.3 1494.3 1693.8 1570.5 2101.1 3021.4 TRUE FALSE FALSE 1745.700448 1588.682545 2177.799616 1951.470604 1771.233439 1465.798717 1759.130433 1749.279372 2014.491769 3003.428578 0.581235878 0.528956326 0.725104513 0.649747631 0.58973716 0.488041809 0.58570743 0.582427491 0.670730705 1 11.55239464 -9.266265016 0.611607783 1.061628552 0.583642348 0.241135188 0.118660913 0.318936876 0.173398831 0.085227039 0.01483628 5.42E-10 9.266265016 -0.477986204 DYDWINAER ddPTM_HeLa_CUDC101_4h_R1 1 DYDWINAER 9 0 O95347-2;O95347;A0A0C4DGE5 O95347-2 SMC2 Structural maintenance of chromosomes protein 2 0 0 117.53 0.035948 20948000 2723.6 1891.1 1797.5 2002.6 1978.5 2509.1 1988 2116.3 1944.1 2373.5 FALSE FALSE TRUE 2404.343737 1949.362549 1894.678287 2084.274684 1832.549997 2461.243098 2064.677826 2357.211038 1863.963375 2359.382316 1.019056437 0.826217326 0.803039963 0.883398451 0.776707524 1.043172648 0.875092524 0.999079726 0.790021762 1 11.2041935 -7.275975243 24.55719968 1.008998878 0.884674446 0 0.104007252 490.3687212 828437.6668 0.012889844 0.01477682 5.30E-08 7.275975243 -0.124324432 DYEDGMEVDTTPTVAGQFEDADVDH ddPTM_HeLa_CUDC101_4h_R1 4 DYEDGMEVDTTPTVAGQFEDADVDH 25 0 P54105;E9PMI6;J3KN38 P54105 CLNS1A Methylosome subunit pICln 0 0 ;;; ;;; 197.85 1.38E-22 56823500 16171.3 12871 11822.4 11254.61 11772 12170.3 11220.98 10066.4 14840.5 13576.3 FALSE FALSE TRUE 14275.72473 13267.54025 12461.5547 11713.62164 10903.60301 11938.1718 11653.77696 11212.31829 14228.76831 13495.54756 1.057809967 0.983104998 0.923382667 0.86796194 0.807940764 0.884600773 0.863527538 0.830816107 1.054330567 1 13.72019589 -6.628638563 1.841163031 1.02710928 0.850294864 0.911909041 0.025626744 0.076393237 0.525923243 0.004891112 0.007445909 2.35E-07 6.628638563 -0.176814416 SVGGDSDT(ph)EDMR ddPTM_HeLa_CUDC101_4h_R1 2 SVGGDSDTEDMR 12 0 Q9UK61-3;Q9UK61;Q9UK61-2;Q9UK61-4;A0A087X0F1 Q9UK61-3 FAM208A Protein FAM208A 1 0 SVGGDS(0.187)DT(0.813)EDMR;SVGGDS(0.276)DT(0.724)EDMR ; 162.31 0.00044267 95183000 7809 6647.4 6729.9 6346.2 7433.7 6757.2 6021.3 5816.4 6867.7 5702 TRUE FALSE FALSE 6893.640858 6852.198515 7093.738751 6605.025467 6885.330761 6628.317668 6253.543558 6478.515465 6584.610499 5668.08425 1.216220605 1.20890908 1.251523167 1.165301216 1.214754484 1.169410576 1.103290509 1.142981505 1.161699475 1 12.46864549 -9.264924574 0.948964769 0.997824413 1.185529049 0.137786479 0.063002495 0.246434303 0.390979892 0.031987237 0.008328178 5.43E-10 9.264924574 0.187704636 DYEEVGADSADGEDEGEEY ddPTM_HeLa_CUDC101_4h_R1 4 DYEEVGADSADGEDEGEEY 19 0 Q9BQE3;F5H5D3 Q9BQE3 TUBA1C Tubulin alpha-1C chain 0 0 ;;; ;;; 280.03 8.04E-87 79472000 41093.5 32121.9 26953.2 28758.1 29324.2 29895.1 27693.3 25365.2 33337 29361.4 FALSE FALSE TRUE 36276.58222 33111.53767 28410.37152 29930.97962 27161.01219 29324.90078 28761.43986 28252.67184 31962.83475 29186.75709 1.242912397 1.13447128 0.973399389 1.025498637 0.930593697 1.004733095 0.985427733 0.967996265 1.095114289 1 14.8330263 -6.759857939 24.99836215 1.11939593 0.982236333 0.557509706 0.059719617 36.80470028 581779.9748 0.014765644 0.020257223 1.74E-07 6.759857939 -0.137159597 DYEEVGVDSVEGEGEEEGEEY ddPTM_HeLa_CUDC101_4h_R1 6 DYEEVGVDSVEGEGEEEGEEY 21 0 P68363;P68363-2;Q71U36-2;Q71U36 P68363 TUBA1B;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1A chain 0 0 ;;;;; ;;;;; 232.56 6.40E-45 162003000 84494.6 67165.1 57271.2 59710.8 62132.6 64663.5 59358.1 50731.6 70207.5 60965.6 FALSE FALSE TRUE 74590.27107 69234.37712 60367.45431 62146.06452 57549.20188 63430.15147 61647.5618 56506.68028 67313.51713 60602.9739 1.230802158 1.142425407 0.996113729 1.025462292 0.949610195 1.046650806 1.017236578 0.932407713 1.110729603 1 15.88710097 -6.75333994 24.82337688 1.114542877 0.997336516 0.503938289 0.061271764 166.7105873 510937.0504 0.014452418 0.020230542 1.76E-07 6.75333994 -0.117206361 DYEHQFHLR ddPTM_HeLa_CUDC101_4h_R1 2 DYEHQFHLR 9 0 Q15276-2;Q15276;A0A087WZZ3 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 0 0 ; ; 167.23 7.24E-06 15938200 12120.3 9910.3 8817.2 9813.8 9674.6 9464.2 8815.7 8529.7 8744 8785.5 FALSE FALSE TRUE 10699.57681 10215.6246 9293.884503 10214.04918 8960.924033 9283.686153 9155.724502 9500.68657 8383.568619 8733.243455 1.225154991 1.169740045 1.0641962 1.169559653 1.026070563 1.063028439 1.04837619 1.08787607 0.959960485 1 13.09230184 -5.745605036 24.99403358 1.114525292 1.056247035 0.041122014 0.077378734 490.79167 774695.2664 0.012904603 0.025741552 1.80E-06 5.745605036 -0.058278257 GSPSS(ph)PAGSTPAIPK ddPTM_HeLa_CUDC101_4h_R1 2 GSPSSPAGSTPAIPK 15 0 Q9HCE3 Q9HCE3 ZNF532 Zinc finger protein 532 1 0 GSPS(0.098)S(0.478)PAGS(0.333)T(0.091)PAIPK;GS(0.002)PS(0.184)S(0.755)PAGS(0.045)T(0.015)PAIPK ; 133.16 0.00060647 38701000 7928.6 6711.1 7153.9 6881.7 7564.3 6568.5 6890.5 6589.6 8590.7 8534.2 TRUE FALSE FALSE 6999.221527 6917.861036 7540.661473 7162.365471 7006.296659 6443.216806 7156.268893 7339.733428 8236.58771 8483.438199 0.825045384 0.815454875 0.888868557 0.84427626 0.825879378 0.759505363 0.843557615 0.865183815 0.97090207 1 13.05043337 -9.264760743 0.64249374 1.022144332 0.829672362 0.765669265 0.033396781 0.37097889 0.227321698 0.041046228 0.00743676 5.44E-10 9.264760743 -0.19247197 DYETATLSDIK ddPTM_HeLa_CUDC101_4h_R1 3 DYETATLSDIK 11 0 O43707;O43707-2 O43707 ACTN4 Alpha-actinin-4 0 0 ;; ;; 125.48 0.0029726 12282900 3477.7 3036.76 2522.78 2780.56 2668.41 2854.48 2924.3 2324.39 2811.68 2292.29 FALSE FALSE TRUE 3070.049278 3130.318976 2659.169118 2893.963255 2471.566711 2800.03555 3037.091231 2588.989162 2695.78136 2278.655357 1.347307423 1.3737571 1.166990484 1.270031138 1.084660172 1.228810465 1.332843609 1.136191638 1.183057961 1 11.15396702 -9.443650471 1.189409271 1.000697386 1.252391705 0.174620613 0.104574819 0.310642078 0.789492185 0.063456801 0.016005587 3.60E-10 9.443650471 0.251694318 DYFEEYGK ddPTM_HeLa_CUDC101_4h_R1 3 DYFEEYGK 8 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;; ;; 145.63 0.020799 522130000 14315.1 11481.3 11847.5 10907.9 10969.7 10895.3 10360 10194.9 12022.6 13195.6 FALSE FALSE TRUE 12637.10568 11835.02524 12488.01169 11352.77131 10160.48709 10687.49031 10759.58867 11355.44621 11527.02334 13117.11198 0.963406098 0.902258459 0.952039725 0.865493206 0.774597876 0.814774648 0.820271161 0.865697131 0.878777535 1 13.67916249 -6.547792187 0.872322141 0.986173877 0.8157586 0.525637761 0.046839606 0.162622886 0.247325068 0.006653304 0.012275471 2.83E-07 6.547792187 -0.170415277 DYFEEYGKIDTIEIITDR ddPTM_HeLa_CUDC101_4h_R1 5 DYFEEYGKIDTIEIITDR 18 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;;; ;;;; 164.93 1.43E-05 89877700 6050.64 6198.4 5972.01 5261.83 7743.8 6503.11 6075.63 6243.22 6610.52 6228.79 FALSE FALSE TRUE 5341.393151 6389.365357 6294.874925 5476.430171 7172.555302 6379.074012 6309.969084 6953.922929 6338.031568 6191.74088 0.862664193 1.031917433 1.016656712 0.88447341 1.158406891 1.030255325 1.019094501 1.123096567 1.023626746 1 12.59612938 -5.767732765 24.99963227 0.945326507 1.074422122 0.363483545 0.06832042 109.9807179 436885.5895 0.010841419 0.020009972 1.71E-06 5.767732765 0.129095616 DYFEK(ac)YGK ddPTM_HeLa_CUDC101_4h_R1 2 DYFEKYGK 8 1 P51991;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 1 ; DYFEK(1)YGK;DYFEK(1)YGK 98.033 0.017227 896050 188.72 150.393 152.33 240.81 234.779 136.78 183.33 232.684 0 142.44 FALSE TRUE FALSE 166.5985277 155.0264301 160.5654206 250.6312727 217.4598209 134.1711494 190.4010995 259.171806 0 141.5927605 1.17660343 1.094875398 1.133994563 1.770085361 1.535811719 0.947584812 1.344709283 1.830402946 0 1 7.145603694 -1 0.112438863 0.8311796 3.077692422 0.332579986 0.401310987 90.50974369 0.709961591 1.394158304 31.74857675 0.1 1 2.246512822 DYFGAHTYELLAK ddPTM_HeLa_CUDC101_4h_R1 2 DYFGAHTYELLAK 13 0 P52209-2;P52209 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 0 ; ; 130.56 3.10E-05 15044000 12290.7 9866.7 9063.7 9648.4 9683.7 10203.3 8805.1 7464 8703.1 12173.4 FALSE FALSE TRUE 10850.00278 10170.68133 9553.711038 10041.90346 8969.352744 10008.68905 9144.715657 8313.671589 8344.354534 12100.99208 0.896620931 0.840483265 0.789498165 0.829841338 0.74120805 0.827096571 0.755699665 0.687023968 0.68955954 1 13.56283771 -7.0931239 0.211859646 1.064341279 0.65357363 0 0.103233474 0.57917184 0.106395485 0.074994048 0.094450575 8.07E-08 7.0931239 -0.410767649 DYGHSSSR ddPTM_HeLa_CUDC101_4h_R1 1 DYGHSSSR 8 0 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 0 99.139 0.018152 1033000 758.45 809.71 936.9 830.55 1264.7 1311.9 1276.7 1258.2 1201.7 683.13 FALSE FALSE TRUE 669.5456407 834.6562054 987.551648 864.4234189 1171.405601 1286.877693 1325.942747 1401.428402 1152.165417 679.0667124 0.985979181 1.229122544 1.454277805 1.272958022 1.725022858 1.895068143 1.952595706 2.063756589 1.696689583 1 9.407409503 -5.780965357 0.59588701 0.977656818 2.152966934 0.570576541 0.245341816 0.15439444 0.091073804 0.02054502 0.090979866 1.66E-06 5.780965357 1.175310116 SSLVTSK(ac)LAGGQVE ddPTM_HeLa_CUDC101_4h_R1 1 SSLVTSKLAGGQVE 14 1 O43768;O43768-3;A0A1W2PRU0;O43768-5;O43768-7 O43768 ENSA Alpha-endosulfine 0 1 SSLVTSK(1)LAGGQVE 106.58 0.0083854 856220 312.24 478.04 686.35 752.09 1024.6 879.01 1029 1269.7 338.88 372 FALSE TRUE FALSE 275.6397005 492.7678458 723.4561571 782.763481 949.0172993 862.2443488 1068.688875 1414.237516 324.911223 369.7873275 0.745400613 1.332570938 1.956411438 2.116793689 2.566386755 2.331730389 2.89000946 3.824461821 0.878643477 1 8.530551974 -5.604628479 0.493375033 0.82133692 3.781793475 0.906050698 0.288044045 0.352266368 0.12417502 0.083380036 0.488620775 2.49E-06 5.604628479 2.960456555 up DYGNSPLHR ddPTM_HeLa_CUDC101_4h_R1 2 DYGNSPLHR 9 0 A0A0U1RRM4;A0A0D9SF20;A0A087WUW5;K7ELW5;A6NLN1 A0A0U1RRM4;A6NLN1 PTBP1 0 0 ; ; 128.27 0.003427 35684000 6640.9 5078.8 4751.2 4052 8117.6 6630.6 6200.5 6089.7 7285.4 5418.6 FALSE FALSE TRUE 5862.463769 5235.271808 5008.064244 4217.258074 7518.780821 6504.132352 6439.655362 6782.926833 6985.092728 5386.369926 1.088388627 0.971948061 0.929766116 0.782949952 1.395890168 1.207516833 1.195546435 1.259276085 1.29680895 1 12.3950976 -5.748311951 24.99999894 1.011389608 1.255553676 0.468858079 0.131735451 130.625988 248763.771 0.014996239 0.02984867 1.79E-06 5.748311951 0.244164068 DYHFKVDNDENEHQLSLR ddPTM_HeLa_CUDC101_4h_R1 1 DYHFKVDNDENEHQLSLR 18 1 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 0 0 55.688 0.019765 5860900 1712.9 1675.3 1989.8 2051.6 2913.7 2346.9 2283.8 2479.5 2530 2199.8 FALSE FALSE TRUE 1512.116459 1726.914007 2097.374607 2135.273116 2698.762156 2302.136793 2371.886931 2761.756258 2425.712329 2186.715492 0.691501233 0.789729626 0.9591438 0.976475048 1.234162453 1.052782953 1.08468017 1.262970088 1.109294894 1 11.09454981 -6.142750035 1.936318421 0.84774842 1.145006464 0.417264233 0.128851899 0.208452494 1.530289103 0.021081639 0.039024604 7.20E-07 6.142750035 0.297258044 DYIDGVYDNAEYAER ddPTM_HeLa_CUDC101_4h_R1 2 DYIDGVYDNAEYAER 15 0 Q6YHK3-2;Q6YHK3-4;Q6YHK3 Q6YHK3-2 CD109 CD109 antigen 0 0 ; ; 175.88 1.92E-06 7375700 2379 1970.31 1828.28 1950.16 1875.12 1845.8 1919.95 1846.86 2311.2 2182.6 FALSE FALSE TRUE 2100.137226 2031.012916 1927.122347 2029.695954 1736.796133 1810.59444 1994.003115 2057.099077 2215.931358 2169.617798 0.967975663 0.93611553 0.888231258 0.935508529 0.800507875 0.834522302 0.919057318 0.948138921 1.021346414 1 11.0832252 -7.069380602 1.070012896 0.98962927 0.880384805 0.561692362 0.043208715 0.264380902 0.59178089 0.008930068 0.011665858 8.52E-08 7.069380602 -0.109244465 DYIPVDQEELR ddPTM_HeLa_CUDC101_4h_R1 2 DYIPVDQEELR 11 0 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 202.96 5.68E-16 18585900 7297.5 5827.9 5466.3 6226.8 6223.4 6083.3 6279.2 4924.6 5054.7 5282.3 FALSE FALSE TRUE 6442.098112 6007.450691 5761.824713 6480.755819 5764.312181 5967.271188 6521.390847 5485.196558 4846.343127 5250.880645 1.226860511 1.144084411 1.097306357 1.234222649 1.097780081 1.136432456 1.241961356 1.044624117 0.922958158 1 12.35834369 -9.473613411 1.189025123 0.999220482 1.161504793 0.537386859 0.067953495 0.317839965 0.797744504 0.042506249 0.010238007 3.36E-10 9.473613411 0.162284311 STPAEDDS(ph)PGDSQVK ddPTM_HeLa_CUDC101_4h_R1 1 STPAEDDSPGDSQVK 15 0 Q9UHB6-4;Q9UHB6-5 Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 1 0 ST(0.001)PAEDDS(0.999)PGDS(0.001)QVK 195.6 3.35E-16 11815000 2355.3 2077.1 2092.9 2081.6 2335.8 2156.8 2060.9 2340.2 2291.6 2979.5 TRUE FALSE FALSE 2079.215304 2141.092989 2206.048505 2166.496645 2163.492688 2115.662633 2140.389603 2606.598909 2197.139278 2961.777801 0.702015966 0.722908041 0.7448393 0.731485206 0.730470965 0.714321862 0.722670554 0.880079156 0.741831233 1 11.5322477 -9.264609315 0.872035046 1.008997681 0.738435678 0 0.091949726 0.210372564 0.272199372 0.038071807 0.009128154 5.44E-10 9.264609315 -0.270562002 DYLDFLDDEEDQGIYQSK ddPTM_HeLa_CUDC101_4h_R1 2 DYLDFLDDEEDQGIYQSK 18 0 P25205;P25205-2 P25205 MCM3 DNA replication licensing factor MCM3 0 0 ; ; 193.64 1.33E-16 18409900 11105.2 10000.7 9466.9 9899.4 10021.6 10445.5 9502.7 9353.4 11298.8 10994 FALSE FALSE TRUE 9803.46529 10308.80971 9978.70925 10303.14032 9282.326534 10246.26949 9869.222322 10418.15325 10833.05868 10928.6072 0.897046175 0.94328669 0.913081518 0.942767924 0.849360432 0.937564074 0.903063139 0.953291948 0.991257027 1 13.41582193 -9.368719575 0.893252933 1.004574201 0.915319818 0.536294508 0.028969088 0.383226106 0.500860749 0.024002049 0.005078535 4.28E-10 9.368719575 -0.089254384 DYLHLPPEIVPATLR ddPTM_HeLa_CUDC101_4h_R1 2 DYLHLPPEIVPATLR 15 0 P46783;A0A2R8Y6L3;F6U211;A0A2R8Y7H1;S4R435;A0A2R8YFH6;A0A1W2PQS6 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 0 ; ; 101.36 0.0048658 19961600 4915.9 4110.3 3789.2 3829 4079.4 4219.7 3938.2 3543 4206.5 4921.9 FALSE FALSE TRUE 4339.665654 4236.933471 3994.055614 3985.16317 3778.470789 4139.216253 4090.097693 3946.320799 4033.10629 4892.62432 0.886981172 0.865983814 0.816342182 0.814524662 0.772278953 0.846011462 0.835972154 0.806585697 0.824323722 1 12.25639279 -8.134943264 0.484879052 1.003372401 0.80899186 0.079662742 0.05693005 0.194745319 0.106705837 0.015944404 0.008448293 7.33E-09 8.134943264 -0.194380541 DYLHYIR ddPTM_HeLa_CUDC101_4h_R1 2 DYLHYIR 7 0 P62280;M0QZC5;M0R1H5 P62280 RPS11 40S ribosomal protein S11 0 0 ; ; 110.34 0.013019 27181000 31723 20870.5 13649.6 18981 20737 20335.6 17555.2 15805.1 15035.4 7361.1 FALSE FALSE TRUE 28004.47803 21513.49537 14387.53866 19755.12722 19207.27282 19947.73231 18232.30994 17604.2887 14415.63445 7317.31585 3.827151732 2.940080189 1.966231738 2.699777846 2.624906895 2.726099668 2.491666387 2.405839663 1.970071368 1 12.83709882 -6.137963279 15.400854 2.395914776 2.59373717 0.028579995 0.688104509 8.785562252 1061.238224 0.162493393 0.26947618 7.28E-07 6.137963279 0.197822394 DYLLCDYNR ddPTM_HeLa_CUDC101_4h_R1 1 DYLLCDYNR 9 0 B1AK87;P47756-2;P47756;B1AK85;B1AK88;A0A6I8PRV6 B1AK87 CAPZB F-actin-capping protein subunit beta 0 0 134.77 0.0019562 0 2462.4 1434.5 836.06 1670 1491 1466.1 1340.3 1475.8 883.96 503.13 FALSE FALSE TRUE 2173.761205 1478.695245 881.2599325 1738.109818 1381.0119 1438.136585 1391.99582 1643.799107 847.5227947 500.1373604 4.346328383 2.956578256 1.762035797 3.475264909 2.761265224 2.875483215 2.78322703 3.28669529 1.694580053 1 8.966180569 -9.567091355 1.352968756 1.003402737 3.156559766 0.501659788 0.65249117 0.262190723 0.862445045 0.510978443 0.120822963 2.71E-10 9.567091355 2.15315703 DYLLDDGTLVVSGR ddPTM_HeLa_CUDC101_4h_R1 2 DYLLDDGTLVVSGR 14 0 X6RKY7;X6RF82;X6RA30;O75794 X6RKY7 CDC123 Cell division cycle protein 123 homolog 0 0 ; ; 188.27 1.98E-10 8087200 2845.21 2929.46 2600.2 2874.87 3010.37 2832.84 2534.87 3015.8 3050.91 2579.25 FALSE FALSE TRUE 2511.698797 3019.71319 2740.774677 2992.119625 2788.301003 2778.808297 2632.640785 3359.106482 2925.150198 2563.908506 0.979636672 1.177777281 1.068983027 1.167014976 1.087519697 1.083817262 1.026807618 1.310150683 1.140894923 1 11.32412906 -7.273522994 24.73192832 0.99038398 1.123090547 0.110273439 0.08819224 429.3784728 878820.9732 0.011557305 0.013266572 5.33E-08 7.273522994 0.132706567 EVAATEEDVTRLPS(ph)PTSPFSSLSQDQAATSK ddPTM_HeLa_CUDC101_4h_R1 4 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 E9PMS6 LMO7 LIM domain only protein 7 1 0 EVAATEEDVTRLPS(0.925)PT(0.055)S(0.017)PFS(0.002)SLSQDQAATSK;EVAATEEDVTRLPS(0.597)PT(0.019)S(0.315)PFS(0.04)S(0.014)LS(0.014)QDQAATSK;EVAAT(0.001)EEDVT(0.016)RLPS(0.325)PT(0.15)S(0.15)PFS(0.057)S(0.07)LS(0.23)QDQAATSK;EVAATEEDVT(0.001)RLPS(0.724)PT(0.161)S(0.059)PFS(0.031)S(0.012)LS(0.012)QDQAATSK ;;; 107.15 6.22E-11 678093000 12490.02 10807.4 10279.48 9584.77 11677.73 10656.33 9913.5 10991.4 10643.75 9339.77 TRUE FALSE FALSE 11025.95879 11140.36318 10835.21978 9975.67835 10816.28712 10453.07826 10295.86702 12242.61655 10205.01012 9284.216633 1.18760249 1.199924951 1.167058053 1.07447712 1.165018822 1.125897712 1.108964539 1.318648307 1.099178372 1 13.18056447 -9.264293901 0.891443936 0.995325395 1.163900045 0.282118617 0.068641756 0.408975687 0.558289438 0.046527805 0.011403913 5.44E-10 9.264293901 0.16857465 ILENSEDS(ph)SPECLF ddPTM_HeLa_CUDC101_4h_R1 2 ILENSEDSSPECLF 14 0 F6XU50;A0A0B4J1V9;Q9NRZ9-6;Q9NRZ9-5;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9;A0A087WSW7 F6XU50 HELLS Lymphoid-specific helicase 1 0 ILENSEDS(0.917)S(0.083)PECLF;ILENSEDS(0.909)S(0.091)PECLF ; 151.99 0.00018096 8905000 7415.6 6013.9 5488.3 5786.5 7214.7 6263.5 6395.2 4831.8 5345.3 2871.9 TRUE FALSE FALSE 6546.354609 6199.181131 5785.014099 6022.498481 6682.485955 6144.034173 6641.865006 5381.832581 5124.964472 2854.817811 2.293090152 2.171480473 2.026403954 2.109591182 2.340774927 2.152163318 2.326546017 1.885175495 1.795198437 1 11.47918296 -9.263951042 0.76617654 0.914792631 2.180768187 0.465522147 0.276271627 0.163963917 0.154599429 0.130906144 0.02772442 5.45E-10 9.263951042 1.265975556 QGS(ph)PDQVS(ph)PVSEMTSTSLYQDK ddPTM_HeLa_CUDC101_4h_R1 3 QGSPDQVSPVSEMTSTSLYQDK 22 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 QGS(1)PDQVS(1)PVSEMTSTSLYQDK;QGS(1)PDQVS(1)PVSEMTSTSLYQDK;QGS(0.999)PDQVS(0.953)PVS(0.029)EMT(0.007)S(0.003)T(0.003)S(0.004)LY(0.001)QDK ;; 135.47 1.15E-06 48814700 12326.5 11308.8 9679.72 10161.5 11919 12065.2 10978 11069.4 11743.6 13496.2 TRUE FALSE FALSE 10881.60636 11657.21072 10203.03494 10575.92989 11039.75912 11835.07641 11401.42514 12329.49575 11259.52384 13415.924 0.811096303 0.868908524 0.760516752 0.788311703 0.822884739 0.882166328 0.849842705 0.919019499 0.839265625 1 13.7116588 -9.263916316 0.877386192 1.005316642 0.834674317 0 0.065592206 0.317398482 0.416957125 0.03631063 0.008766573 5.45E-10 9.263916316 -0.170642325 DYNDADMAR ddPTM_HeLa_CUDC101_4h_R1 1 DYNDADMAR 9 0 Q14696;H0YLI4;Q14696-2 Q14696 MESDC2 LDLR chaperone MESD 0 0 154.01 0.0016367 29596000 4637.9 4078.8 4373.3 4501.9 4412.1 4138.1 3664 3982.8 3891.7 3793.6 FALSE FALSE TRUE 4094.252393 4204.462993 4609.733827 4685.506941 4086.628173 4059.172637 3805.321707 4436.185853 3731.282479 3771.035498 1.085710382 1.114935936 1.222405312 1.242498763 1.083688598 1.076407962 1.009091988 1.176384008 0.989458328 1 11.88074502 -8.202636289 0.921430596 1.013671628 1.128502016 0.379941446 0.067212842 0.446760779 0.803066784 0.023329722 0.0158619 6.27E-09 8.202636289 0.114830388 DEEDTS(ph)FESLSK ddPTM_HeLa_CUDC101_4h_R1 1 DEEDTSFESLSK 12 0 H7C3L4;E7EQA9;Q92844 H7C3L4 TANK TRAF family member-associated NF-kappa-B activator 1 0 DEEDT(0.194)S(0.806)FESLSK 109.15 0.0059681 4201800 2321.5 2185.7 1545 1897.6 2359.3 2104.4 1761.8 1613.1 2400.6 1556.3 TRUE FALSE FALSE 2049.377289 2253.038826 1628.527373 1974.99233 2185.259139 2064.262076 1829.753216 1796.728784 2301.646252 1547.043058 1.324706044 1.456351725 1.052671006 1.276624021 1.412539313 1.334327487 1.182742268 1.161395459 1.487771293 1 10.59529764 -9.263263921 0.956771517 0.997312724 1.27878967 0 0.188292582 0.418212486 0.677061948 0.081591202 0.021461513 5.45E-10 9.263263921 0.281476946 DYNVTANSK ddPTM_HeLa_CUDC101_4h_R1 2 DYNVTANSK 9 0 P00338-3;P00338;P00338-2;P00338-5;F5GYU2;F5GXY2;F5GXH2 P00338-3 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 135.86 0.013397 40736000 8277 6782.6 6835.3 6710.4 7819.2 7523 6880.2 6245.4 7733.6 6928.2 FALSE FALSE TRUE 7306.782607 6991.563867 7204.836994 6984.079117 7242.393194 7379.511309 7145.571619 6956.351091 7414.817735 6886.990758 1.060954321 1.015184151 1.046151686 1.014097356 1.051604895 1.071514623 1.037546277 1.01007121 1.076641162 1 12.74965803 -9.526291781 1.25843587 0.999803491 1.041220006 0 0.030687236 0.400410187 1.12667312 0.014325021 0.0033624 2.98E-10 9.526291781 0.041416515 DYQDDTLELYNREDR ddPTM_HeLa_CUDC101_4h_R1 2 DYQDDTLELYNREDR 15 1 H0YIQ2;P49750-3;P49750-1;P49750 H0YIQ2 YLPM1 YLP motif-containing protein 1 0 0 ; ; 171.11 8.51E-07 26034000 4189.6 3728.8 3643.6 3851.2 4520.3 4020.5 4191.9 3469.6 4152.1 4266.7 FALSE FALSE TRUE 3698.501439 3843.679908 3840.584037 4008.268582 4186.846475 3943.815661 4353.582987 3864.565239 3980.948681 4241.321479 0.872016294 0.906245831 0.9055159 0.94505182 0.987156125 0.929855396 1.026468521 0.911170082 0.938610454 1 12.05029812 -5.99037584 22.1031959 0.932356349 0.965780172 0.1461378 0.042509678 113.8621111 261489.2331 0.008227421 0.01489105 1.02E-06 5.99037584 0.033423823 DYQGPLKEHEVTIFVR ddPTM_HeLa_CUDC101_4h_R1 2 DYQGPLKEHEVTIFVR 16 1 P53396;P53396-2;P53396-3;K7EIE7 P53396 ACLY ATP-citrate synthase 0 0 ; ; 94.45 0.0035976 46237000 7178.2 7366.5 8111.3 7392.5 8694.9 7445.2 7234.8 7730.9 7926.2 7468.8 FALSE FALSE TRUE 6336.782277 7593.453134 8549.821413 7693.998103 8053.49455 7303.195215 7513.848659 8610.954407 7599.478681 7424.375245 0.853510507 1.022773349 1.151587996 1.036315898 1.084737003 0.983678084 1.012051305 1.159822089 1.023584939 1 12.85805391 -7.014250877 23.11746121 0.931209522 1.065655034 0.329915234 0.068097635 173.4469056 281362.4118 0.011992978 0.015011802 9.68E-08 7.014250877 0.134445511 ESSPIPS(ph)PTSDR ddPTM_HeLa_CUDC101_4h_R1 2 ESSPIPSPTSDR 12 0 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 ESSPIPS(0.906)PT(0.093)S(0.001)DR;ESSPIPS(0.954)PT(0.046)SDR ; 152 0.00048011 44033000 5575.7 4815.5 5001.5 4631.24 5619.6 4731.4 4961.6 5733.3 5035.84 6571.7 TRUE FALSE FALSE 4922.124898 4963.859847 5271.896219 4820.121985 5205.053304 4641.156428 5152.970574 6385.955697 4828.260544 6532.611236 0.753469741 0.75985845 0.807012086 0.737855325 0.796779896 0.71045961 0.788807169 0.977550242 0.73910116 1 12.67344407 -9.263059694 0.896081092 1.005706624 0.785030249 0 0.10530304 0.347091039 0.480052054 0.051776046 0.012776524 5.46E-10 9.263059694 -0.220676375 DYQYSDQGIDY ddPTM_HeLa_CUDC101_4h_R1 1 DYQYSDQGIDY 11 0 Q15417-3;Q15417-2;Q15417 Q15417-3 CNN3 Calponin-3 0 0 109.44 0.039621 3746400 2737.7 2274.6 2117.3 2217.1 2659.7 2213 1971.4 2073.6 2265 2304.9 FALSE FALSE TRUE 2416.790956 2344.67773 2231.767642 2307.522921 2463.49923 2170.790712 2047.437558 2309.650242 2171.635741 2291.190352 1.05481893 1.023344799 0.9740647 1.007128421 1.075204959 0.947451053 0.893613032 1.008056899 0.94781987 1 11.16188161 -5.177940801 9.163004553 1.023646166 0.943710829 0.265798238 0.043965472 0.273267161 28.28046846 0.005306909 0.013567046 6.64E-06 5.177940801 -0.079935337 KASSPS(ph)PLTIGT(ph)PESQR ddPTM_HeLa_CUDC101_4h_R1 1 KASSPSPLTIGTPESQR 17 1 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 2 0 KAS(0.014)S(0.174)PS(0.81)PLT(0.004)IGT(0.997)PESQR 181.34 3.28E-17 0 2144.8 2050.4 1782.8 1403.2 2307.4 1795.9 1812.9 2178.6 2222.7 2299.7 TRUE FALSE FALSE 1893.389795 2113.570394 1879.183561 1460.428561 2137.187699 1761.6462 1882.82416 2426.603018 2131.079365 2286.021282 0.828246793 0.924562868 0.8220324 0.638851691 0.934894052 0.77061671 0.823624948 1.06149625 0.932222015 1 11.15862312 -9.26297926 0.730941846 1.013408446 0.841819277 0.142331035 0.107203754 0.972151641 0.816954803 0.102730292 0.020853561 5.46E-10 9.26297926 -0.171589169 TTFDEAMADLHTLS(ph)EDSYK ddPTM_HeLa_CUDC101_4h_R1 1 TTFDEAMADLHTLSEDSYK 19 0 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 1 0 TTFDEAMADLHT(0.099)LS(0.866)EDS(0.034)YK 68.634 0.0025212 0 508.12 366.81 510.49 538.99 394.29 590.1 450.06 497.64 663.22 701.05 TRUE FALSE FALSE 448.5589439 378.1109813 538.0886335 560.9723419 365.2040122 578.8448257 467.418965 554.2893261 635.8817909 696.8801234 0.643667295 0.542576791 0.772139448 0.804976815 0.524055716 0.83062324 0.670730803 0.795386907 0.912469404 1 9.444766696 -9.262876868 0.967324908 1.002026423 0.694959019 0.488410932 0.104298071 0.321236614 0.533918554 0.06862759 0.018254865 5.46E-10 9.262876868 -0.307067404 RGS(ph)ASGSEPAGDSDR ddPTM_HeLa_CUDC101_4h_R1 2 RGSASGSEPAGDSDR 15 1 P50747;A0A0C4DG27 P50747 HLCS Biotin--protein ligase;Biotin--[methylmalonyl-CoA-carboxytransferase] ligase;Biotin--[propionyl-CoA-carboxylase [ATP-hydrolyzing]] ligase;Biotin--[methylcrotonoyl-CoA-carboxylase] ligase;Biotin--[acetyl-CoA-carboxylase] ligase 1 0 RGS(1)ASGSEPAGDSDR;RGS(0.999)AS(0.001)GSEPAGDSDR ; 166.52 7.96E-06 12735000 2117.59 1314.38 2181 2697.8 1858.28 1915.51 2488.5 1336.37 2186.94 2878.1 TRUE FALSE FALSE 1869.36931 1354.87449 2298.911457 2807.827945 1721.198387 1878.974838 2584.482279 1488.496959 2096.793408 2860.980933 0.653401527 0.473569912 0.803539594 0.981421411 0.601611275 0.656758952 0.903355296 0.520275036 0.732893178 1 11.48229417 -9.262353941 1.00088213 0.999459413 0.705402702 0.050382148 0.17128897 0.483920213 0.872169337 0.100149998 0.027552767 5.47E-10 9.262353941 -0.29405671 RAELPGSSS(ph)PLLAQPR ddPTM_HeLa_CUDC101_4h_R1 1 RAELPGSSSPLLAQPR 16 1 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 0 RAELPGS(0.086)S(0.086)S(0.828)PLLAQPR 178.85 2.79E-07 13749000 2725.4 2739.2 2064.4 2112.4 2806 2219.9 1905.4 2155.2 2245.8 2039.5 TRUE FALSE FALSE 2405.932743 2823.591505 2176.007708 2198.552803 2599.00697 2177.559106 1978.891916 2400.539256 2153.227173 2027.368963 1.186726633 1.39273687 1.07331608 1.084436451 1.28196052 1.074081307 0.97608869 1.184066295 1.062079578 1 10.98539296 -9.261876295 1.105364128 1.003930438 1.155313638 0.158193718 0.113064006 0.612589195 1.390901259 0.067270679 0.020335404 5.47E-10 9.261876295 0.1513832 DYTYEELLNR ddPTM_HeLa_CUDC101_4h_R1 1 DYTYEELLNR 10 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 0 0 195.32 5.90E-16 45986000 2387.5 2101.4 2017.7 1694.3 2197.8 2031.6 1965.1 2170.5 1854.7 2334.3 FALSE FALSE TRUE 2107.640869 2166.141643 2126.782965 1763.400877 2035.672673 1992.850615 2040.894565 2417.580947 1778.248481 2320.41548 0.908303227 0.933514563 0.916552653 0.759950489 0.877288007 0.858833529 0.87953842 1.041874168 0.766349172 1 11.18016743 -8.698044033 0.578598708 1.00356069 0.886698422 0 0.097796382 0.90956309 0.579334065 0.052159852 0.017131952 2.00E-09 8.698044033 -0.116862268 GHTDTEGRPPS(ph)PPPTST(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 1 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 0 GHT(0.001)DT(0.008)EGRPPS(0.991)PPPT(0.035)S(0.271)T(0.694)PEK 80.835 0.0050066 64589000 8248.5 6389.7 6629.8 6316.5 7357.1 6662 6171.3 6789.1 7596.2 2499.7 TRUE FALSE FALSE 7281.623334 6586.559083 6988.227042 6574.114172 6814.38139 6534.93345 6409.329108 7561.943702 7283.081421 2484.831673 2.930429217 2.650706345 2.8123543 2.645697994 2.742391553 2.629930035 2.579381605 3.043241835 2.931016012 1 11.27893241 -9.261704706 0.776177118 0.881317199 2.756887182 0 0.610034805 0.121455957 0.11835955 0.144469532 0.031070554 5.47E-10 9.261704706 1.875569983 EAAATEIRR ddPTM_HeLa_CUDC101_4h_R1 1 EAAATEIRR 9 1 P56545;P56545-3;P56545-2 P56545 CTBP2 C-terminal-binding protein 2 0 0 126.31 0.0043681 1031600 576.63 491.76 443.52 649.98 585.97 400.59 656.86 564.79 650.97 572.26 FALSE FALSE TRUE 509.0383055 506.9105427 467.4980328 676.4889939 542.7441605 392.9494132 682.1953102 629.0834106 624.1367411 568.8561721 0.894845359 0.891104936 0.821821149 1.189209201 0.95409734 0.690771117 1.199240412 1.105874282 1.097178464 1 9.151920122 -6.297170341 24.99755504 0.9349341 1.014538331 0.072278696 0.151104216 1366.896069 956284.3113 0.022308699 0.034077643 5.04E-07 6.297170341 0.07960423 KEEASS(ph)PGAGEGPAEEGTR ddPTM_HeLa_CUDC101_4h_R1 1 KEEASSPGAGEGPAEEGTR 19 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 KEEAS(0.056)S(0.944)PGAGEGPAEEGTR 88.504 0.0021093 8858500 2055.7 1507.3 2099.4 2239.4 2009.4 1798.4 1742.4 1801.8 2463.9 2579.7 TRUE FALSE FALSE 1814.733962 1553.738126 2212.899914 2330.732412 1861.170565 1764.098516 1809.604952 2006.909629 2362.336999 2564.35583 0.707676346 0.605898023 0.86294573 0.908895866 0.725784832 0.687930472 0.705676229 0.782617453 0.921220437 1 11.32438075 -9.261632236 0.936457506 1.003771917 0.747318478 0.486947299 0.085698023 0.364228224 0.56050691 0.064191345 0.016571139 5.47E-10 9.261632236 -0.256453439 TLS(ph)DESLCSGR ddPTM_HeLa_CUDC101_4h_R1 3 TLSDESLCSGR 11 0 O60292;M0R2Q7 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 0 T(0.006)LS(0.993)DES(0.001)LCSGR;TLS(0.999)DESLCSGR;T(0.169)LS(0.825)DES(0.006)LCS(0.001)GR ;; 155.88 0.00018981 75234100 8064.37 7011.7 6485.16 6400.49 6844.51 6918.9 7139.65 6826.38 7563.61 5930.04 TRUE FALSE FALSE 7119.076773 7227.722166 6835.767366 6661.529647 6339.604133 6786.93351 7415.028692 7603.467506 7251.834794 5894.767858 1.20769417 1.226124987 1.159633005 1.130074976 1.0754629 1.151348734 1.257900034 1.289867165 1.230215501 1 12.52521928 -9.261504348 0.847181096 0.992208392 1.184476146 0 0.092454981 0.428839006 0.517859605 0.054418107 0.012737746 5.48E-10 9.261504348 0.192267754 EAAEGLGSHDR ddPTM_HeLa_CUDC101_4h_R1 1 EAAEGLGSHDR 11 0 P17655 P17655 CAPN2 Calpain-2 catalytic subunit 0 0 116.84 0.0046506 3008800 2435 1885.1 2089.7 2303 1999.6 2128.4 1907.6 1500.3 1910 2428.3 FALSE FALSE TRUE 2149.572991 1943.177697 2202.675503 2396.926294 1852.093492 2087.804316 1981.176771 1671.088088 1831.268992 2413.856364 0.890514044 0.805009663 0.912513079 0.992986298 0.767275767 0.864924835 0.820751724 0.692289779 0.7586487 1 11.23712412 -1 0.09555041 1.084692291 0.168936931 0 0.096729056 77.20028389 0.529913029 0.630803729 9.305383833 0.1 1 -0.91575536 RPDYAPMES(ph)S(ph)DEEDEEFQFIK ddPTM_HeLa_CUDC101_4h_R1 4 RPDYAPMESSDEEDEEFQFIK 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 RPDY(0.085)APMES(0.957)S(0.957)DEEDEEFQFIK;RPDYAPMES(1)S(1)DEEDEEFQFIK;RPDYAPMES(1)S(1)DEEDEEFQFIK;RPDYAPMES(1)S(1)DEEDEEFQFIK ;;; 93.92 0.0002324 17459800 4424.72 3925.62 3792.56 3437.66 4269.27 4150.67 3760.75 3589.99 4454.04 4396.41 TRUE FALSE FALSE 3906.061029 4046.563699 3997.597265 3577.862634 3954.334458 4071.502885 3905.803387 3998.65995 4270.442586 4370.259958 0.893782307 0.925932036 0.914727569 0.818684167 0.904828201 0.931638604 0.893723354 0.914970731 0.977159855 1 12.09350338 -9.261338003 0.645134224 1.012900875 0.897394772 0.572858765 0.030447508 0.54718548 0.339301172 0.036390498 0.006645646 5.48E-10 9.261338003 -0.115506103 SSS(ph)NVNGGPELDR ddPTM_HeLa_CUDC101_4h_R1 2 SSSNVNGGPELDR 13 0 G5E9L9;Q8N568-2;Q8N568;A0A0U1RR70;Q8N568-3 G5E9L9 DCLK2 Serine/threonine-protein kinase DCLK2 1 0 S(0.228)S(0.038)S(0.734)NVNGGPELDR;S(0.082)S(0.082)S(0.836)NVNGGPELDR ; 184.48 6.11E-11 65903500 3130.7 2647.1 2476.8 2430 2856 2603.8 2663.7 2643.6 2887.9 1863.24 TRUE FALSE FALSE 2763.724092 2728.654013 2610.7033 2529.105903 2645.31857 2554.136853 2766.439801 2944.536738 2768.85954 1852.157366 1.492164836 1.473230118 1.409547238 1.365491912 1.428236401 1.379006396 1.493631077 1.58978756 1.49493752 1 10.85499096 -9.26115997 0.754204746 0.965322667 1.452884102 0 0.164680427 0.21657369 0.196737937 0.066026797 0.013831673 5.48E-10 9.26115997 0.487561434 EAAGEGPALYEDPPDQK ddPTM_HeLa_CUDC101_4h_R1 1 EAAGEGPALYEDPPDQK 17 0 G3V5D9;A0A0C4DGK8;G3V3C7;G3V5Q1;G3V3M6;P27695;G3V5M0;G3V359;G3V3Y6 G3V5D9 APEX1 "DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial" 0 0 194.86 1.31E-15 6001400 5086.8 3957.5 4083.7 4190.4 3900.3 4152 3948.6 3240 4435.4 4775.1 FALSE FALSE TRUE 4490.533015 4079.425884 4304.477175 4361.302624 3612.582639 4072.807518 4100.898825 3608.828503 4252.570935 4746.697493 0.946033115 0.859424029 0.906836212 0.918807788 0.761072861 0.858029719 0.863947793 0.760281966 0.89590098 1 12.21270839 -6.604300129 0.305543587 1.012350035 0.771510851 0.434445633 0.053595905 0.736190069 0.167762533 0.031997223 0.066789422 2.49E-07 6.604300129 -0.240839183 LQELNAHIVVS(ph)DPEDITDCPR ddPTM_HeLa_CUDC101_4h_R1 2 LQELNAHIVVSDPEDITDCPR 21 0 Q16513-3;Q16513-2;Q16513;B1AL79 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 LQELNAHIVVS(0.998)DPEDIT(0.002)DCPR;LQELNAHIVVS(0.987)DPEDIT(0.013)DCPR ; 120.66 5.86E-07 73426000 7294 6177.1 6105.3 5718 6227 5993.9 5081 3299.3 6075.3 1657.19 TRUE FALSE FALSE 6439.008377 6367.409129 6435.370986 5951.204755 5767.646616 5879.576344 5276.975872 3674.878976 5824.873563 1647.33296 3.908747371 3.865283633 3.906539322 3.612630172 3.501202705 3.569148731 3.203345043 2.230805226 3.535941855 1 10.68591647 -9.260437647 0.92722309 0.957727917 3.517306197 0 0.900930937 0.21206531 0.318825859 0.371457992 0.095121497 5.49E-10 9.260437647 2.559578279 SSS(ph)PVTELASRS(ph)PIR ddPTM_HeLa_CUDC101_4h_R1 2 SSSPVTELASRSPIR 15 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.217)S(0.285)S(0.499)PVTELAS(0.374)RS(0.626)PIR;S(0.043)S(0.365)S(0.592)PVT(0.107)ELAS(0.036)RS(0.857)PIR ; 197.51 3.37E-15 114632000 8124.5 7464 6847.1 7201.1 7892.5 7460.2 7288.6 7151.3 7380 10040.4 TRUE FALSE FALSE 7172.158426 7693.956993 7217.274937 7494.791984 7310.285999 7317.909115 7569.723744 7965.375085 7075.793276 9980.679254 0.71860424 0.770885107 0.723124624 0.750930051 0.732443736 0.733207523 0.758437733 0.798079458 0.70894907 1 13.28492229 -9.259963055 0.787264399 1.015982735 0.744978941 0 0.092424781 0.133253318 0.134572329 0.023045177 0.005035665 5.50E-10 9.259963055 -0.271003795 EAAIWELEER ddPTM_HeLa_CUDC101_4h_R1 1 EAAIWELEER 10 0 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 0 0 117.7 0.030385 3351300 1697 1717.5 1585.1 1223 1362.9 1440.8 1134.4 1419.8 1500.2 1444.3 FALSE FALSE TRUE 1498.080232 1770.414139 1670.795301 1272.879226 1262.361582 1413.319141 1178.154188 1581.424293 1438.361121 1435.709239 1.043442635 1.23312861 1.163742111 0.886585662 0.879259914 0.984404851 0.820607791 1.101493429 1.001847088 1 10.48754789 -6.237443379 24.62128013 1.05012974 0.927851524 0.340381479 0.10010011 714.8135571 733439.7516 0.015506961 0.025706684 5.79E-07 6.237443379 -0.122278217 S(ph)SPSIICMPK ddPTM_HeLa_CUDC101_4h_R1 1 SSPSIICMPK 10 0 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 1 0 S(0.914)S(0.086)PSIICMPK 123.11 0.0040785 17066000 1835 1519.7 1576.1 1633.2 1699.6 1506.2 1602.6 1800.6 1448.5 1818.8 TRUE FALSE FALSE 1619.904082 1566.520156 1661.308733 1699.808955 1574.223894 1477.471745 1664.412819 2005.573026 1388.792217 1807.981697 0.895973717 0.866446911 0.918874752 0.940169338 0.870707871 0.817193972 0.920591631 1.109288346 0.768145064 1 10.82016436 -9.259944308 0.988382852 1.000044943 0.91128994 0 0.102297157 0.783124849 1.371298363 0.048660794 0.013268508 5.50E-10 9.259944308 -0.088755003 ESCSS(ph)PSTVGSSLTTR ddPTM_HeLa_CUDC101_4h_R1 3 ESCSSPSTVGSSLTTR 16 0 E9PMC9;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7;H0YEP9 E9PMC9 C11orf30;EMSY Protein EMSY 1 0 ESCS(0.019)S(0.327)PS(0.327)T(0.327)VGS(0.001)SLTTR;ESCS(0.01)S(0.706)PS(0.026)T(0.088)VGS(0.146)S(0.024)LTTR;ESCS(0.012)S(0.977)PS(0.008)T(0.002)VGSSLTTR ;; 183.28 1.08E-10 64412800 10021.5 8413.7 7991.4 7986.9 9044.1 8767.8 8994 8381.1 11394.4 3607.26 TRUE FALSE FALSE 8846.794962 8672.916124 8423.439257 8312.640304 8376.934761 8600.568823 9340.901593 9335.170546 10924.71801 3585.803857 2.467172025 2.41868113 2.349107646 2.318208311 2.336138589 2.398505096 2.604967244 2.603368985 3.046658 1 11.80808086 -9.259896216 0.609111949 0.785229419 2.461399009 0 0.645994896 0.16231276 0.087708182 0.151561099 0.026529187 5.50E-10 9.259896216 1.676169589 (ac)S(ph)AADEVDGLGVARPHYGSVLDNER ddPTM_HeLa_CUDC101_4h_R1 2 SAADEVDGLGVARPHYGSVLDNER 24 1 P46940;A0A0J9YXZ5;H0YLE8 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 1 0 S(1)AADEVDGLGVARPHYGSVLDNER;S(1)AADEVDGLGVARPHYGSVLDNER ; 47.392 0.00031668 22472700 551.98 535.402 458.36 402.33 473.05 522.84 479.57 562.36 477.066 622.62 TRUE FALSE FALSE 487.2777411 551.897101 483.1403281 418.7387564 438.1540439 512.8676981 498.0671755 626.3767893 457.4011376 618.9166285 0.787307561 0.891714773 0.780622633 0.676567307 0.707937101 0.828653932 0.804740336 1.012053579 0.739035141 1 9.273601273 -9.259811898 0.7134186 1.018142882 0.802127897 0 0.119668598 0.715974674 0.567872782 0.093989401 0.018745188 5.50E-10 9.259811898 -0.216014985 EAALSTALSEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 EAALSTALSEKR 12 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 ; EAALSTALSEK(1)R;EAALSTALSEK(1)R 222.18 9.11E-27 3420900 2500 1356.83 1092.31 1052.75 3128.8 2330.7 2676.6 2358.5 2394.9 1181.55 FALSE TRUE FALSE 2206.95379 1398.632324 1151.363583 1095.685695 2897.994657 2286.245781 2779.837359 2626.982107 2296.181208 1174.522088 1.879022806 1.190809724 0.980282614 0.932877897 2.467381999 1.94653281 2.366781678 2.236639169 1.954991934 1 10.19785813 -5.754408571 24.99982011 1.339696109 2.2403802 0.623499855 0.354340315 96.6419208 343631.6932 0.058069951 0.114173494 1.76E-06 5.754408571 0.900684091 GMKAFVS(ph)YVQAY(ph)AK ddPTM_HeLa_CUDC101_4h_R1 1 GMKAFVSYVQAYAK 14 1 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 2 0 GMKAFVS(0.953)Y(0.047)VQAY(1)AK 93.011 0.0013526 0 858.17 707.92 859.8 569.67 1014.6 706.62 683.41 826.93 928.33 922.77 TRUE FALSE FALSE 757.5766135 729.7301761 906.2833888 592.9036049 939.7549794 693.1424008 709.7693526 921.0643686 890.0638445 917.281323 0.825893425 0.795535849 0.988010293 0.646370519 1.024500288 0.755648658 0.773774997 1.004124193 0.970328101 1 9.841220455 -9.258953231 0.870473952 1.005183593 0.846477838 0.172049318 0.115770384 0.779600241 1.006832214 0.082529441 0.019906268 5.51E-10 9.258953231 -0.158705755 KIDAGTMAEPSAS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 KIDAGTMAEPSASPSK 16 1 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 KIDAGTMAEPS(0.009)AS(0.981)PS(0.009)K;KIDAGTMAEPS(0.424)AS(0.534)PS(0.042)K ; 166.91 6.11E-06 134322000 25432 22402.7 22280 21454.3 24025.5 22156.1 21009.9 23147.4 29624 27576.6 TRUE FALSE FALSE 22450.89951 23092.90063 23484.52419 22329.29909 22253.18673 21733.50931 21820.25888 25782.40645 28402.88618 27412.57316 0.819000076 0.842420028 0.856706303 0.81456414 0.811787591 0.792829961 0.795994552 0.940532153 1.036126234 1 14.74255014 -9.258835844 0.691307864 1.017663294 0.828628086 0.742391053 0.042735449 0.378747602 0.278275565 0.042785759 0.008309413 5.51E-10 9.258835844 -0.189035208 DRWPEVSPEDTQSLSLSEES(ph)PSKETSLDVSSK ddPTM_HeLa_CUDC101_4h_R1 1 DRWPEVSPEDTQSLSLSEESPSKETSLDVSSK 32 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 DRWPEVSPEDT(0.002)QS(0.033)LS(0.108)LS(0.108)EES(0.325)PS(0.325)KET(0.061)S(0.027)LDVS(0.007)S(0.003)K 50.224 0.0072643 17197000 1619.9 1240.9 1622.3 1526.4 1610.1 1279.5 1587.4 1414.6 1812.1 1926.2 TRUE FALSE FALSE 1430.017778 1279.130658 1710.006445 1588.65319 1491.326131 1255.095669 1648.62655 1575.632346 1737.404471 1914.742877 0.746845853 0.668043043 0.893073669 0.829695313 0.778864958 0.65549045 0.8610172 0.822895003 0.907382653 1 10.90293496 -9.258082939 0.934029743 1.003228261 0.780677541 0.421972963 0.077617039 0.352545634 0.539912146 0.053790598 0.013917507 5.52E-10 9.258082939 -0.22255072 ACS(ph)VEELYAIPPDADVAK ddPTM_HeLa_CUDC101_4h_R1 3 ACSVEELYAIPPDADVAK 18 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 ACS(0.999)VEELY(0.001)AIPPDADVAK;ACS(0.999)VEELY(0.001)AIPPDADVAK;ACS(0.997)VEELY(0.003)AIPPDADVAK ;; 139.49 6.46E-05 24087000 6897.6 5578.6 6213.3 5542.1 6749.4 6381.7 5472.7 4976.6 6876.7 5352.8 TRUE FALSE FALSE 6089.073784 5750.470054 6549.209792 5768.130793 6251.510209 6259.979705 5683.783872 5543.116028 6593.239515 5320.961308 1.14435596 1.080720141 1.230832065 1.084039229 1.174883606 1.176475329 1.068187409 1.041750862 1.239106833 1 12.3774712 -9.258025678 0.833110701 0.994206504 1.128482598 0 0.092475709 0.520553207 0.604401496 0.045743017 0.010584321 5.52E-10 9.258025678 0.134276094 DCCVEPGTELSPT(ph)LPHQL ddPTM_HeLa_CUDC101_4h_R1 1 DCCVEPGTELSPTLPHQL 18 0 Q14012 Q14012 CAMK1 Calcium/calmodulin-dependent protein kinase type 1 1 0 DCCVEPGT(0.072)ELS(0.231)PT(0.697)LPHQL 85.28 0.033967 10338000 1819.4 1863.1 1401.8 1250.5 1835.2 1803.2 1815 1636 1901.7 444.47 TRUE FALSE FALSE 1606.13269 1920.499903 1477.585548 1301.500795 1699.820952 1768.806964 1885.005158 1822.235627 1823.311121 441.8262727 3.635213181 4.346730879 3.344268188 2.945729749 3.84726092 4.00339924 4.266394451 4.124326098 4.126760299 1 8.787335399 -9.257449888 0.489970158 0.333625013 3.92267149 0 1.060693469 0.447527637 0.145984703 0.783804436 0.121724508 5.53E-10 9.257449888 3.589046478 MSYLTAMGADYLS(ph)CDSR ddPTM_HeLa_CUDC101_4h_R1 2 MSYLTAMGADYLSCDSR 17 0 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 MSYLTAMGADYLS(1)CDSR;MSYLTAMGADYLS(1)CDSR ; 199.61 1.34E-16 18310500 2354.16 1847.19 1920.41 1938.89 1976.65 2011.45 1838.01 1825.92 1487.28 946.33 TRUE FALSE FALSE 2078.208933 1904.099734 2024.233174 2017.966315 1830.836468 1973.084943 1908.902661 2033.775352 1425.973689 940.7011871 2.209212619 2.02412813 2.151834399 2.145172497 1.946246579 2.097461946 2.029233818 2.161978086 1.515862538 1 9.877592715 -9.256993809 0.781396057 0.929275389 2.100551964 0.774206561 0.172029422 0.110651809 0.109876715 0.082341674 0.017937927 5.53E-10 9.256993809 1.171276575 ES(ph)RSPQQSAALPR ddPTM_HeLa_CUDC101_4h_R1 3 ESRSPQQSAALPR 13 1 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;E5RJN3 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 ES(0.947)RS(0.053)PQQSAALPR;ES(0.841)RS(0.158)PQQSAALPR;ES(0.756)RS(0.244)PQQSAALPR ;; 118.87 0.0013163 103015500 4342.5 3572.2 3996.89 3638.19 3697.31 4092.1 3501.2 3264.22 4140.39 5575.5 TRUE FALSE FALSE 3833.478733 3682.255248 4212.973963 3786.571114 3424.566807 4014.05001 3636.242457 3635.80561 3969.721372 5542.336678 0.691671935 0.664386785 0.760143998 0.683208425 0.617892237 0.724252286 0.656084729 0.656005909 0.7162541 1 12.43627864 -9.256502999 0.521958571 1.066392357 0.670973964 0.117918551 0.095690883 0.294638448 0.111010222 0.059135103 0.00944782 5.54E-10 9.256502999 -0.395418393 TCDSITPSKSSPVPVS(ph)DTQK ddPTM_HeLa_CUDC101_4h_R1 1 TCDSITPSKSSPVPVSDTQK 20 1 Q76FK4-2;Q76FK4-4;Q76FK4;F8WE42;F5H101;F5GWN9 Q76FK4-2 NOL8 Nucleolar protein 8 1 0 TCDSITPSKS(0.016)S(0.358)PVPVS(0.471)DT(0.155)QK 112.82 6.15E-05 38561000 4327.9 3739.4 3214.3 3562.1 4324 3617 3554.9 3166.7 3339 2719.5 TRUE FALSE FALSE 3820.590123 3854.606482 3388.074781 3707.377835 4005.027135 3548.011751 3692.013684 3527.184328 3201.365007 2703.324293 1.413293304 1.425876463 1.253299425 1.371414389 1.481519308 1.312462497 1.365730961 1.304758122 1.184232693 1 11.40051887 -9.256396242 0.833874209 0.983296227 1.369324849 0.606016122 0.083163271 0.214591853 0.249903241 0.054204045 0.012581329 5.54E-10 9.256396242 0.386028623 EAAYHPEVAPDVR ddPTM_HeLa_CUDC101_4h_R1 1 EAAYHPEVAPDVR 13 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 84.297 0.023272 15011000 2777.5 2926 2572.4 2364.1 2590.1 2939 2469.7 2447.5 2615.3 2784.5 FALSE FALSE TRUE 2451.92566 3016.146592 2711.471725 2460.518217 2399.033483 2882.943472 2564.957156 2726.113507 2507.496227 2767.93767 0.885831241 1.089672872 0.979599994 0.888935558 0.866722365 1.041549274 0.926667238 0.984889774 0.905907764 1 11.43459574 -4.020400099 0.002412922 1.889779863 2.05E-08 0 0.07079407 778577.5936 276.7706203 106383.9721 110411.1694 9.54E-05 4.020400099 -1.889779843 FYCDYCDTYLTHDS(ph)PSVR ddPTM_HeLa_CUDC101_4h_R1 2 FYCDYCDTYLTHDSPSVR 18 0 A0A0A0MRR7;P09234 A0A0A0MRR7 SNRPC U1 small nuclear ribonucleoprotein C 1 0 FYCDYCDTYLTHDS(0.957)PS(0.043)VR;FYCDYCDTYLT(0.008)HDS(0.742)PS(0.25)VR ; 158 2.20E-05 48098000 3109.1 2895.9 2593.7 2495.3 3122.8 2638.8 2106.51 958.97 3196.8 1190.52 TRUE FALSE FALSE 2744.656011 2985.119247 2733.923268 2597.06912 2892.437265 2588.469287 2187.758796 1068.135269 3065.026551 1183.438734 2.31922104 2.522411309 2.310151923 2.194510831 2.444095484 2.187244014 1.84864559 0.90256913 2.589932594 1 10.20876931 -9.256313419 0.98179659 0.998569013 2.128555627 0 0.653766591 0.388616266 0.670670278 0.306258998 0.083372597 5.54E-10 9.256313419 1.129986614 RLQLS(ph)PWESSVVNR ddPTM_HeLa_CUDC101_4h_R1 2 RLQLSPWESSVVNR 14 1 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 RLQLS(1)PWESSVVNR;RLQLS(0.999)PWESSVVNR ; 82.774 0.011913 33644000 2286.92 1922.53 1861.78 2204.4 2784.8 2093.09 1933.5 1170.14 2415.6 3002 TRUE FALSE FALSE 2018.850704 1981.760871 1962.433458 2294.30496 2579.370852 2053.167796 2008.075743 1303.344008 2316.027946 2984.14397 0.676525906 0.664096937 0.657620235 0.76883186 0.864358716 0.688025717 0.672915168 0.43675641 0.77611133 1 11.54310142 -9.256305046 0.63485081 1.042233393 0.681358699 0.2386917 0.122509643 0.621927287 0.372012137 0.127931568 0.023222607 5.54E-10 9.256305046 -0.360874694 EADDIVNWLK ddPTM_HeLa_CUDC101_4h_R1 2 EADDIVNWLK 10 0 P07237;I3L312;I3L3P5 P07237 P4HB Protein disulfide-isomerase 0 0 ; ; 155.42 0.00069315 37745000 6268.6 5005.1 4868.4 4483.3 5670 5146.7 5042.9 5023.5 4661.3 5405.2 FALSE FALSE TRUE 5533.804211 5159.301198 5131.60043 4666.148352 5251.735396 5048.535272 5237.406342 5595.354934 4469.159241 5373.04963 1.029918685 0.960218415 0.955062913 0.868435744 0.977421717 0.93960332 0.974754879 1.041374139 0.831773304 1 12.39152545 -7.240858411 14.9462453 1.014128038 0.956379101 0 0.070525702 4.617331047 3352.09306 0.006834667 0.008338629 5.74E-08 7.240858411 -0.057748936 EADESLNFEEQILEAAK ddPTM_HeLa_CUDC101_4h_R1 3 EADESLNFEEQILEAAK 17 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 ;; ;; 196.95 1.06E-15 19400600 6295.7 5609.8 5294.3 5317.4 6462.2 6012.7 5235.7 5364.3 6365.5 6205.3 FALSE FALSE TRUE 5557.72759 5782.631289 5580.525872 5534.266556 5985.496381 5898.017765 5437.642703 5974.950229 6103.111396 6168.3906 0.901001242 0.937461919 0.904697227 0.897197813 0.970349767 0.95616801 0.881533459 0.968640058 0.989417142 1 12.59067841 -9.405259354 1.083366541 1.000814973 0.924522367 0.449176209 0.029746902 0.35710764 0.736841501 0.021014157 0.005112881 3.93E-10 9.405259354 -0.076292607 EADGEQDEEEKDDGEAK ddPTM_HeLa_CUDC101_4h_R1 1 EADGEQDEEEKDDGEAK 17 1 F5H1H2;F5H2E6;A0A0C4DGG8;Q8IX12-2;Q8IX12 F5H1H2 CCAR1 Cell division cycle and apoptosis regulator protein 1 0 0 105.53 0.0019281 8437500 2858.9 2261.9 2619.6 2638.2 2506.7 2480.4 2470.5 2135.8 2901.6 3070.1 FALSE FALSE TRUE 2523.784076 2331.586458 2761.2235 2745.797199 2321.785735 2433.090503 2565.788013 2378.930839 2781.99482 3051.838909 0.82697159 0.763993948 0.904773673 0.899718917 0.760782533 0.79725391 0.840735075 0.779507343 0.911579839 1 11.5754631 -9.313602475 0.520295716 1.040861997 0.81723433 0.449581401 0.055253997 0.747865052 0.270319041 0.085339135 0.012644559 4.86E-10 9.313602475 -0.223627667 EADGILK(ac)PLPK ddPTM_HeLa_CUDC101_4h_R1 2 EADGILKPLPK 11 1 P49588;P49588-2 P49588 AARS "Alanine--tRNA ligase, cytoplasmic" 0 1 ; EADGILK(1)PLPK;EADGILK(1)PLPK 143.5 0.00016768 907160 1620.95 874.47 682.92 470.29 1584.24 1073.2 1607.66 1266.39 1455.2 852.31 FALSE TRUE FALSE 1430.944698 901.4113842 719.8407209 489.470459 1467.373771 1052.730498 1669.667985 1410.550719 1395.21604 847.2404222 1.688947624 1.063938123 0.849629812 0.577723213 1.731944951 1.242540453 1.970713319 1.664876559 1.646776999 1 9.726627612 -4.938729213 1.895047049 1.237807479 1.820688769 0.265303496 0.373181931 0.427310628 2.892630842 0.059226636 0.273455855 1.15E-05 4.938729213 0.58288129 VLS(ph)PTAAK ddPTM_HeLa_CUDC101_4h_R1 1 VLSPTAAK 8 0 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 1 0 VLS(0.5)PT(0.5)AAK 87.149 0.033093 19736000 5878.1 5017 5214.7 6133.7 5167.1 6087 5147.5 4987.7 5975.9 7774.8 TRUE FALSE FALSE 5189.078029 5171.567823 5496.622456 6383.858798 4785.933327 5970.900617 5346.040799 5555.479607 5729.570873 7728.555144 0.671416317 0.669150666 0.71120958 0.826009348 0.619253307 0.772576569 0.691725775 0.718825124 0.741350843 1 12.91598301 -9.256179162 0.861110061 1.010496476 0.709021664 0.123451136 0.095443945 0.215449868 0.271361634 0.04308767 0.010322517 5.54E-10 9.256179162 -0.301474812 YADSPGAS(ph)SPEQPK ddPTM_HeLa_CUDC101_4h_R1 2 YADSPGASSPEQPK 14 0 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 0 YADSPGAS(0.5)S(0.5)PEQPK;YADSPGAS(0.5)S(0.5)PEQPK ; 149.82 0.00024173 29748800 10088.1 8391.8 9462.4 8771.8 9900.4 8218.8 8246.5 9150.7 9684.6 10909.4 TRUE FALSE FALSE 8905.588211 8650.341411 9973.965966 9129.551919 9170.067216 8062.040083 8564.570267 10192.3787 9285.396689 10844.5104 0.821207033 0.797670074 0.919724874 0.841859298 0.845595317 0.743421306 0.789760897 0.93986527 0.856230143 1 13.4046773 -9.255980606 0.724359775 1.014753161 0.832613846 0.069062678 0.070777487 0.504276493 0.416012481 0.056200796 0.011423733 5.55E-10 9.255980606 -0.182139315 ARS(ph)PSVAAMASPQLCR ddPTM_HeLa_CUDC101_4h_R1 4 ARSPSVAAMASPQLCR 16 1 P25325-2 P25325-2 MPST 3-mercaptopyruvate sulfurtransferase 1 0 ARS(0.868)PS(0.132)VAAMASPQLCR;ARS(0.727)PS(0.273)VAAMASPQLCR;ARS(0.996)PS(0.004)VAAMASPQLCR;ARS(0.995)PS(0.005)VAAMASPQLCR ;;; 114.54 0.0054702 128954000 3748.41 3256.7 2865.26 3084.14 3411.48 2686.97 2882.66 3080.13 2816.31 1882.8 TRUE FALSE FALSE 3309.027062 3357.035067 3020.164623 3209.92456 3159.821917 2635.720524 2993.845162 3430.759549 2700.22051 1871.601022 1.768019478 1.793670247 1.613679725 1.715068822 1.688298884 1.408270509 1.599617187 1.833061378 1.442732975 1 10.87005721 -9.255709899 0.892822246 0.982531925 1.673411982 0.453182541 0.175128449 0.204959943 0.281857773 0.095319082 0.023673286 5.55E-10 9.255709899 0.690880057 SLEPEES(ph)PGKR ddPTM_HeLa_CUDC101_4h_R1 1 SLEPEESPGKR 11 1 Q9BVI0;Q5JWZ0;Q5JXL1 Q9BVI0 PHF20 PHD finger protein 20 1 0 SLEPEES(1)PGKR 110.98 0.013732 8974500 2928.9 2541.8 2450.9 2295.2 2829.8 2812.9 2405.7 2683.7 2971.4 2849.7 TRUE FALSE FALSE 2585.578782 2620.109845 2583.403068 2388.808177 2621.051292 2759.248619 2498.488655 2989.20156 2848.917634 2832.749858 0.912745181 0.924935126 0.911977124 0.843282428 0.925267469 0.974053043 0.882001158 1.055229622 1.005707449 1 11.4679875 -9.255518471 0.935651538 1.000985466 0.924540525 0.2306832 0.053295575 0.691014606 1.063733477 0.036202292 0.009415124 5.55E-10 9.255518471 -0.076444942 EAEAAIYHLQLFEELR ddPTM_HeLa_CUDC101_4h_R1 3 EAEAAIYHLQLFEELR 16 0 P14618;B4DNK4;P14618-3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;; ;; 174.21 4.26E-07 11789000 6317.77 5291.35 5313.94 5235.99 4716.6 4680.97 4353.65 4210.99 5361.58 7669.8 FALSE FALSE TRUE 5577.210578 5454.370222 5601.22767 5449.536304 4368.665815 4591.688296 4521.571739 4690.35208 5140.573403 7624.179688 0.731516151 0.715404207 0.734666272 0.714770182 0.573001424 0.602253421 0.593056817 0.615194325 0.674246098 1 12.89636641 -12.67781556 0.124511685 1.996105669 0.466284183 0.137827927 0.108846398 10.61353235 0.116706986 2.758902365 0.159614775 2.10E-13 12.67781556 -1.529821486 EAEAAIYHLQLFEELRR ddPTM_HeLa_CUDC101_4h_R1 6 EAEAAIYHLQLFEELRR 17 1 P14618;B4DNK4;P14618-3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;;; ;;;;; 161.21 2.64E-05 406332000 23123.6 21825.3 20104.4 21197.1 22382.3 20529.8 20562.5 20742.6 20615 21996.7 FALSE FALSE TRUE 20413.08666 22497.71162 21191.30468 22061.60936 20731.20232 20138.22827 21355.60251 23103.85374 19765.24097 21865.86265 0.933559631 1.028896595 0.969150178 1.00895216 0.948108138 0.920989425 0.976664075 1.056617528 0.903931452 1 14.41639265 -4.268012358 5.461488932 0.970513754 1.059517851 0.333639012 0.038103709 0.123306621 13.84665427 0.004867848 0.040645996 5.39E-05 4.268012358 0.089004097 VGS(ph)TENIK ddPTM_HeLa_CUDC101_4h_R1 1 VGSTENIK 8 0 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;H0Y2V1;H7C4C5;F8W9U4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 VGS(0.929)T(0.071)ENIK 87.298 0.032896 406740000 5477.5 4342.6 5084.1 4781.5 4507.3 4707 4939.6 5039.4 4612 5116.3 TRUE FALSE FALSE 4835.435753 4476.390359 5358.961825 4976.510237 4174.805459 4617.221817 5130.122027 5613.064926 4421.891408 5085.86802 0.950759189 0.880162509 1.053696597 0.978497715 0.8208639 0.907853251 1.008701367 1.103659179 0.869446747 1 12.31227831 -9.254968627 1.081199929 0.999110871 0.958645046 0 0.087844262 1.644254726 3.55551817 0.047806061 0.014285175 5.56E-10 9.254968627 -0.040465825 EAEAMALLAEAER ddPTM_HeLa_CUDC101_4h_R1 1 EAEAMALLAEAER 13 0 M0QZM9;M0QZN5;M0R031;M0R0Y2;M0R2M1;P54920 M0QZM9 NAPA Alpha-soluble NSF attachment protein 0 0 133.91 0.0053432 1301700 1264.6 959.24 1089.2 1099 1057.1 1158.8 823.04 873.14 1161.4 1253.7 FALSE FALSE TRUE 1116.365505 988.7930474 1148.085447 1143.82197 979.119839 1136.697821 854.7849285 972.5347282 1113.5266 1246.242937 0.89578482 0.793419179 0.921237275 0.917816211 0.785657283 0.91209971 0.685889487 0.780373312 0.89350685 1 10.28336961 -1 0.07028688 1.187881383 0.079736699 0.368809959 0.070347976 114.0757625 0.597746254 1.676922402 12.57107751 0.1 1 -1.108144685 SSSPATEQS(ph)WMENDFDELREEGFR ddPTM_HeLa_CUDC101_4h_R1 2 SSSPATEQSWMENDFDELREEGFR 24 1 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 S(0.003)S(0.003)S(0.029)PAT(0.002)EQS(0.963)WMENDFDELREEGFR;S(0.009)S(0.009)S(0.137)PAT(0.043)EQS(0.803)WMENDFDELREEGFR ; 110.34 4.26E-07 30679000 1334.97 1191.05 1309.49 1034.56 1292.6 1331.81 1219.87 1171.24 1699.26 1838.64 TRUE FALSE FALSE 1178.48684 1227.744839 1380.28499 1076.753829 1197.247473 1306.407943 1266.920795 1304.569227 1629.215784 1827.703688 0.644790974 0.671741731 0.755201732 0.589129319 0.655055566 0.71478104 0.693176253 0.713775015 0.891400392 1 10.83581648 -9.254930728 0.783924149 1.02030933 0.676637672 0.788750922 0.053888663 0.189438016 0.189800313 0.041400497 0.009072435 5.56E-10 9.254930728 -0.343671658 GGGAPWPGGAQTYS(ph)PSSTCR ddPTM_HeLa_CUDC101_4h_R1 3 GGGAPWPGGAQTYSPSSTCR 20 0 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 GGGAPWPGGAQT(0.16)YS(0.387)PS(0.387)S(0.063)T(0.004)CR;GGGAPWPGGAQT(0.018)YS(0.974)PS(0.006)S(0.002)TCR;GGGAPWPGGAQT(0.328)YS(0.672)PSSTCR ;; 176.46 3.37E-08 59864000 9540.7 8006.6 8207.6 7782.8 9326.5 8099.7 8340.4 8009.8 8593 6438.1 TRUE FALSE FALSE 8422.353609 8253.273856 8651.327683 8100.216224 8638.502676 7945.211718 8662.092022 8921.603255 8238.792903 6399.805895 1.316032665 1.289613153 1.351810949 1.265697172 1.349806981 1.241476984 1.353492928 1.394042788 1.287350435 1 12.64381243 -9.254920408 0.556835629 0.942000551 1.327259405 0.10735573 0.09896822 0.300472403 0.131648368 0.061107614 0.010136234 5.56E-10 9.254920408 0.385258854 EAEEEFWYR ddPTM_HeLa_CUDC101_4h_R1 2 EAEEEFWYR 9 0 A0A3B3IT57;E9PH64;E7EWZ0;E9PF49;Q9Y6M9 A0A3B3IT57 NDUFB9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 0 0 ; ; 141.52 0.0091952 18566100 5405.1 4878.3 3712.4 4778.8 4790.6 4989 4333.5 3887.7 3906 4089.4 FALSE FALSE TRUE 4771.522372 5028.594641 3913.103573 4973.70012 4437.206982 4893.843137 4500.644547 4330.260053 3744.993027 4065.076067 1.173784277 1.237023504 0.962615092 1.22351957 1.091543408 1.203874923 1.107148912 1.065234692 0.921260258 1 11.98906663 -9.361157627 1.076092373 0.999714774 1.136610448 0.382914098 0.083283226 0.490751101 1.013736 0.050648176 0.013053094 4.35E-10 9.361157627 0.136895675 TES(ph)PATAAETASEELDNR ddPTM_HeLa_CUDC101_4h_R1 5 TESPATAAETASEELDNR 18 0 Q9NTJ3;C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2 Q9NTJ3 SMC4 Structural maintenance of chromosomes protein 4 1 0 T(0.013)ES(0.918)PAT(0.068)AAETASEELDNR;T(0.18)ES(0.811)PAT(0.009)AAETASEELDNR;T(0.02)ES(0.979)PATAAETASEELDNR;T(0.156)ES(0.838)PAT(0.006)AAETASEELDNR;T(0.192)ES(0.669)PAT(0.14)AAETASEELDNR ;;;; 209.19 5.52E-24 1413051000 8928.58 7852.37 7432.31 7575.74 8535.08 7926.74 7579.95 7396.28 8159.77 8802.12 TRUE FALSE FALSE 7881.985387 8094.292212 7834.12316 7884.711422 7905.464153 7775.550641 7872.311211 8238.242618 7823.420827 8749.764599 0.900822565 0.925086855 0.895352449 0.90113412 0.903505924 0.888658267 0.899716915 0.941538772 0.894129292 1 13.09502849 -9.254434805 0.656782837 1.011329688 0.904298067 0 0.035943872 0.270375428 0.175773908 0.016803758 0.003143009 5.57E-10 9.254434805 -0.107031622 ELST(ph)SPCNPIVR ddPTM_HeLa_CUDC101_4h_R1 1 ELSTSPCNPIVR 12 0 H3BSS6;Q9H2Y7;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 ELS(0.008)T(0.496)S(0.496)PCNPIVR 205.31 9.49E-17 43659000 3863.1 3300.1 3087.2 2877.8 3508 3132.1 3183.7 3396.8 3522.1 2262.4 TRUE FALSE FALSE 3410.273274 3401.772169 3254.10337 2995.169123 3249.221829 3072.360411 3306.496375 3783.477982 3376.917547 2248.943144 1.51638928 1.512609235 1.446947816 1.331811847 1.444777222 1.366135208 1.470244539 1.682335986 1.501557545 1 11.13503147 -9.254138746 0.80768832 0.974770245 1.466638443 0 0.178227066 0.259460764 0.279788103 0.082264448 0.018570968 5.57E-10 9.254138746 0.491868198 EAEEGEDDRDSANGEDDS ddPTM_HeLa_CUDC101_4h_R1 1 EAEEGEDDRDSANGEDDS 18 1 P07910-2;P07910;G3V4C1;P07910-3;G3V2D6;G3V2Q1;P07910-4 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 0 168.89 2.55E-11 0 871.62 793.13 517.62 616.47 547.14 624.76 524.15 367.1 811.11 706.98 FALSE FALSE TRUE 769.4500249 817.5653952 545.6041029 641.6123112 506.7785723 612.8437439 544.3666411 408.8891801 777.6757025 702.7748515 1.09487416 1.163339003 0.776356897 0.912969936 0.721110852 0.872034255 0.774596074 0.581821019 1.10657873 1 9.456918756 -6.747651879 24.99327074 1.054943794 0.781698951 0.729020294 0.093873644 103.5241048 187662.6517 0.01480898 0.020880477 1.79E-07 6.747651879 -0.273244843 TVSSDGCST(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 TVSSDGCSTPSR 12 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 TVSSDGCS(0.025)T(0.959)PS(0.016)R 138.42 0.0062665 7128700 2960.3 2233.7 2332.1 2739.6 2276.1 2323.5 2488.4 1785.9 2696.4 645.62 TRUE FALSE FALSE 2613.298122 2302.517649 2458.18038 2851.33273 2108.196638 2279.183109 2584.378422 1989.199637 2585.253251 641.7798235 4.071954315 3.587706508 3.830255004 4.442851933 3.284921963 3.551347402 4.026892599 3.09950479 4.028255729 1 9.325934624 -9.25388723 0.807120169 0.851007234 3.771608868 0 1.001033209 0.176783874 0.190328916 0.332684854 0.075077632 5.57E-10 9.25388723 2.920601634 GLSAS(ph)LPDLDSENWIEVK ddPTM_HeLa_CUDC101_4h_R1 2 GLSASLPDLDSENWIEVK 18 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YBW1;H0YC73 Q6PKG0 LARP1 La-related protein 1 1 0 GLS(0.021)AS(0.907)LPDLDS(0.072)ENWIEVK;GLS(0.015)AS(0.972)LPDLDS(0.013)ENWIEVK ; 134.08 7.04E-05 17383200 2974.09 2452.61 2557.11 2684.66 2469.41 2795.69 2479 2916.04 2924.29 2944.78 TRUE FALSE FALSE 2625.471679 2528.172007 2695.355101 2794.152039 2287.246544 2742.366871 2574.61586 3247.990207 2803.749528 2927.264318 0.89690284 0.863663726 0.920776127 0.954526731 0.78135976 0.936836095 0.879529684 1.109565059 0.957805386 1 11.5153373 -9.253670542 0.992370415 0.999839596 0.91184208 0.073115475 0.079848433 0.80348327 1.423493688 0.049434385 0.013644793 5.58E-10 9.253670542 -0.087997516 MS(ph)CFSRPSMS(ph)PTPLDR ddPTM_HeLa_CUDC101_4h_R1 1 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 MS(0.335)CFS(0.335)RPS(0.355)MS(0.917)PT(0.058)PLDR 49.466 0.039049 6770400 2984.7 2494.9 2423.9 2393.4 2594.3 2308.3 2051.5 2927.3 2848.9 1567.2 TRUE FALSE FALSE 2634.837991 2571.764912 2554.943366 2491.013197 2402.923658 2264.273023 2130.627042 3260.531999 2731.467136 1557.878225 1.691299069 1.650812542 1.640014813 1.598978121 1.542433561 1.4534339 1.367646719 2.092931237 1.753325191 1 10.60536675 -9.253113878 0.843057313 0.974573967 1.616663265 0 0.293958406 0.341253032 0.408774908 0.143898053 0.033909979 5.58E-10 9.253113878 0.642089299 T(ph)QSSLTVSEVLTRR ddPTM_HeLa_CUDC101_4h_R1 1 TQSSLTVSEVLTRR 14 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 T(0.996)QS(0.003)S(0.002)LTVSEVLTRR 120.99 0.013727 8357200 1690.6 1578 1259.3 1433.9 1635.2 1545.2 1251.2 1157.6 1462.2 1201.8 TRUE FALSE FALSE 1492.430431 1626.61631 1327.381567 1492.38064 1514.574554 1515.727884 1299.459203 1289.376505 1401.927497 1194.65164 1.249259935 1.361582117 1.111103457 1.249218257 1.267795986 1.268761397 1.087730648 1.079290784 1.173503179 1 10.22237428 -9.252672 0.996553953 1.000633496 1.213147788 0.105785698 0.100858796 0.398685869 0.713612975 0.059295787 0.016454654 5.59E-10 9.252672 0.212514291 EAENPEGEEKEAATLEVERPLPMEVEK ddPTM_HeLa_CUDC101_4h_R1 1 EAENPEGEEKEAATLEVERPLPMEVEK 27 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 0 43.633 0.026751 18955000 1108.6 1317.9 1266.5 1224.7 1455.5 1287.4 1292.8 1367 1145.3 1343.9 FALSE FALSE TRUE 978.6515885 1358.502937 1334.970821 1274.64856 1348.130665 1262.84499 1342.663729 1522.613754 1098.090249 1335.906423 0.732574956 1.016914743 0.99929965 0.954145094 1.009150522 0.945309468 1.005058218 1.139760786 0.821981413 1 10.38360324 -7.178291423 24.99993089 0.873713115 1.004687916 0.447286059 0.079415538 96.00417829 28864.30807 0.017979466 0.022020258 6.63E-08 7.178291423 0.130974801 RFS(ph)VQR ddPTM_HeLa_CUDC101_4h_R1 1 RFSVQR 6 1 H0YL54;H0YM35;H7C0H1;Q9NQ69-3;Q9NQ69-4;Q9NQ69-2;Q9NQ69;P50458 H0YL54 LHX9;LHX2 LIM/homeobox protein Lhx9;LIM/homeobox protein Lhx2 1 0 RFS(1)VQR 100.27 0.0015507 0 4561.3 4008.3 3699.6 4193.7 4555.5 3774.5 3746.5 4394.6 4257.1 4848.1 TRUE FALSE FALSE 4026.631328 4131.790972 3899.611567 4364.737213 4219.449841 3702.507701 3891.00376 4894.8635 4081.620536 4819.263286 0.835528397 0.857349086 0.809171721 0.905685569 0.875538353 0.768272552 0.807385596 1.01568709 0.84693869 1 12.23459691 -9.25255923 0.853831847 1.005461086 0.85386182 0 0.079404908 0.499395776 0.617138389 0.049979775 0.011933607 5.59E-10 9.25255923 -0.151599266 QSVQPSK(ac)FNSYGR ddPTM_HeLa_CUDC101_4h_R1 1 QSVQPSKFNSYGR 13 1 P41229-4;P41229-3;P41229-2;P41229-5;P41229 P41229-4 KDM5C Lysine-specific demethylase 5C 0 1 QSVQPSK(1)FNSYGR 112.64 0.0056315 2572900 255.74 174.35 297.66 789.59 1091.5 1055.2 1211.8 1470.5 260.1 323.64 FALSE TRUE FALSE 225.7625449 179.7215168 313.7524 821.7928931 1010.98222 1035.073818 1258.539532 1637.895776 249.3785679 321.7149749 0.701747082 0.558635845 0.975249598 2.554412935 3.142477965 3.21736288 3.911970627 5.091139375 0.775153746 1 8.329639281 -5.592100538 0.822571333 0.794068941 4.661146081 0.93364865 0.392742499 0.137988057 0.162611191 0.074123169 0.321726535 2.56E-06 5.592100538 3.86707714 up EAETEPHEGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 EAETEPHEGKR 11 1 P41223;P41223-2 P41223 BUD31 Protein BUD31 homolog 0 1 EAETEPHEGK(1)R 85.924 0.023728 708820 457.26 511.34 438.18 617.38 452.14 419.63 482.89 396.91 477.69 535.75 FALSE TRUE FALSE 403.660676 527.0937793 461.8693362 642.5594249 418.786533 411.6262569 501.5152291 442.09263 457.999416 532.5633352 0.757958067 0.989729755 0.867257105 1.206540861 0.786360054 0.772915125 0.941700632 0.830122167 0.859990513 1 9.056809298 EAETPQAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EAETPQAKK 9 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ; EAETPQAK(1)K;EAETPQAK(1)K 131.44 0.0027245 17480300 10603.8 8166.7 10190.3 10404.7 9801.3 9657.1 10267 10638.3 9146 9603.9 FALSE TRUE FALSE 9360.838638 8418.306347 10741.21844 10829.04864 9078.277626 9472.906907 10663.00163 11849.32107 8768.998009 9546.775576 0.980523588 0.881795773 1.125114795 1.13431478 0.950926054 0.992262448 1.116921786 1.241185673 0.918529816 1 13.22079783 -4.480829687 2.435886116 0.99975608 1.249367362 0.508496041 0.075937988 0.217615438 2.104838234 0.010186861 0.091902661 3.30E-05 4.480829687 0.249611282 EAFDEVDMAHR ddPTM_HeLa_CUDC101_4h_R1 2 EAFDEVDMAHR 11 0 Q9NX46 Q9NX46 ADPRHL2 Poly(ADP-ribose) glycohydrolase ARH3 0 0 ; ; 95.401 0.0015361 6554800 7112.5 6366.3 5858.1 5646 7082.9 6049.6 5913.2 6532.6 7388.8 6662.4 FALSE FALSE TRUE 6278.783532 6562.438157 6174.806606 5876.268284 6560.408578 5934.213959 6141.274105 7276.244778 7084.230537 6622.771748 0.948059781 0.990889979 0.93235987 0.88728232 0.990583524 0.89603178 0.927296657 1.098670625 1.069677592 1 12.69321942 -9.298243185 0.769272019 1.003603058 0.953834042 0.14465097 0.061431384 1.688142828 1.579287687 0.053619449 0.010866619 5.03E-10 9.298243185 -0.049769017 TIGGGDDS(ph)FTTFFCETGAGK ddPTM_HeLa_CUDC101_4h_R1 1 TIGGGDDSFTTFFCETGAGK 20 0 P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 P68366-2 TUBA4A Tubulin alpha-4A chain 1 0 T(0.328)IGGGDDS(0.626)FT(0.041)T(0.005)FFCETGAGK 88.684 0.00060464 0 3120.9 2708.2 2443.9 2359.7 2267.2 2550 2683.3 2188.1 2416.6 1086.4 TRUE FALSE FALSE 2755.072833 2791.636432 2576.024626 2455.938765 2099.953173 2501.362999 2786.79578 2437.184459 2316.986725 1079.938044 2.551139713 2.58499684 2.385344826 2.274147835 1.944512635 2.316209723 2.580514497 2.25678174 2.145481157 1 10.07673283 -9.252179885 0.882624434 0.961328164 2.36712261 0.226062752 0.391555666 0.173643929 0.232597108 0.163351822 0.040308869 5.60E-10 9.252179885 1.405794446 EAFLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 EAFLKK 6 1 Q86SW4;P36957-2;P36957 Q86SW4 DLST "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" 0 1 EAFLK(1)K 96.964 0.024205 2763200 3167.1 2249.9 1283.9 1956.4 2074.4 2271.3 2190.6 1500.9 1395.5 1241.8 FALSE TRUE FALSE 2795.857339 2319.216752 1353.311518 2036.190448 1921.375645 2227.978737 2275.092176 1671.756389 1337.976899 1234.413718 2.264927307 1.878800209 1.096319246 1.649520269 1.556508662 1.804888186 1.843054838 1.35429181 1.083896654 1 10.26961028 -9.630114357 1.469543731 1.002483206 1.760101814 0.390494556 0.306750108 0.337713602 1.317181084 0.2469274 0.057109605 2.34E-10 9.630114357 0.757618608 EAFNMIDQNR ddPTM_HeLa_CUDC101_4h_R1 3 EAFNMIDQNR 10 0 P24844;J3KTJ1;P24844-2;J3QRS3;P19105;O14950 P24844;J3QRS3 MYL9;MYL12A;MYL12B Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 0 ;; ;; 163.16 0.00020113 175878900 6437.4 5562.3 5397.3 5420.5 5797.9 6055.3 5484.2 5707.2 5462.5 6126.7 FALSE FALSE TRUE 5682.81773 5733.66787 5689.094364 5641.571419 5370.200468 5939.805241 5695.727431 6356.884579 5237.333438 6090.258116 0.933099652 0.941449075 0.934130255 0.926327146 0.881768944 0.975296142 0.935219382 1.043779173 0.859952622 1 12.57228766 -9.279043306 0.950308302 1.000819561 0.943113393 0 0.05861185 0.685738775 1.085664972 0.027535046 0.007042493 5.26E-10 9.279043306 -0.057706168 EAFSLFDKDGDGTITTK ddPTM_HeLa_CUDC101_4h_R1 2 EAFSLFDKDGDGTITTK 17 1 P0DP25;P0DP24;P0DP23;E7EMB3;F8WBR5;M0QZ52;G3V479 P0DP25 CALM2;CALM3;CALM1 0 0 ; ; 124.2 0.00036146 187243000 5459.1 4653.7 4649.9 4328.9 5233.4 4489 4382.2 5006.1 4886.1 4967.3 FALSE FALSE TRUE 4819.192573 4797.074981 4901.287659 4505.451253 4847.342508 4403.379804 4551.222922 5575.974189 4684.69289 4937.754279 0.975988739 0.971509458 0.992614736 0.912449466 0.981689698 0.891777832 0.9217192 1.129253072 0.9487497 1 12.26963933 -8.214304369 0.677496861 0.997740413 0.964779933 0 0.063538607 1.78050901 1.791805476 0.02593061 0.01496064 6.11E-09 8.214304369 -0.032960481 EAGDVCYADVYR ddPTM_HeLa_CUDC101_4h_R1 2 EAGDVCYADVYR 12 0 J3KTL2;Q07955;J3KSR8;Q07955-3;Q07955-2 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 0 ; ; 163.66 0.00039443 56617000 5105.7 4282.8 3957.6 4366.6 4671.3 4709.3 4341.3 3900.4 4085.9 3593.7 FALSE FALSE TRUE 4507.217586 4414.747992 4171.559827 4544.688822 4326.707506 4619.477949 4508.745395 4344.40577 3917.477473 3572.324513 1.261704408 1.235819416 1.167743807 1.272193723 1.211174262 1.293129427 1.262132088 1.216128533 1.096618591 1 11.80264743 -9.312339619 0.674936312 0.968982778 1.24438588 0.729738873 0.044998144 0.252832272 0.169985396 0.041581028 0.007347512 4.87E-10 9.312339619 0.275403102 EAGEEAPWMRR ddPTM_HeLa_CUDC101_4h_R1 1 EAGEEAPWMRR 11 1 D6R9L0 D6R9L0 GNB2L1 0 0 90.709 0.037861 98057000 777.27 589.55 572.15 576.23 491.1 572.3 659.29 945.76 571.25 865.93 FALSE FALSE TRUE 686.1595889 607.7133367 603.0821597 599.7311501 454.8725314 561.384331 684.7190361 1053.421496 547.7028332 860.7794098 0.797137549 0.70600357 0.700623357 0.696730362 0.528442626 0.652181412 0.795464004 1.223799598 0.636287099 1 9.749499758 -8.594154049 0.787953102 0.987182255 0.744435684 0 0.203609751 0.669260698 0.843900857 0.083235493 0.038129741 2.55E-09 8.594154049 -0.242746571 SDS(ph)APPTPVNR ddPTM_HeLa_CUDC101_4h_R1 2 SDSAPPTPVNR 11 0 A2A2F0;Q86X10-4;Q86X10-2;Q86X10-3;Q86X10 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 S(0.034)DS(0.965)APPTPVNR;S(0.022)DS(0.9)APPT(0.078)PVNR ; 173.04 6.52E-07 32472000 7615.7 6687.9 6034.9 6488.7 6902.7 6864.8 5759.7 5963.7 5548.1 5474.9 TRUE FALSE FALSE 6722.999191 6893.946272 6361.164949 6753.337233 6393.501573 6733.865378 5981.853558 6642.583502 5319.40497 5442.335051 1.235315196 1.266725809 1.168830086 1.240889649 1.174771769 1.2373118 1.099133644 1.220539243 0.977412254 1 12.41001006 -9.251416332 0.92451478 0.996783527 1.204974867 0.767061247 0.047323908 0.234478032 0.351305797 0.033252377 0.008594746 5.61E-10 9.251416332 0.20819134 AT(ph)PPPS(ph)PLLSELLK ddPTM_HeLa_CUDC101_4h_R1 2 ATPPPSPLLSELLK 14 0 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;Q9H0E9-3 H7C128 BRD8 Bromodomain-containing protein 8 2 0 AT(1)PPPS(0.999)PLLS(0.001)ELLK;AT(1)PPPS(0.999)PLLS(0.001)ELLK ; 118.16 0.0059034 23096300 4894.7 4360.1 3875 3909.6 4520.5 4313.9 3804.9 3802.2 5071.3 5193.6 TRUE FALSE FALSE 4320.950686 4494.429513 4084.494221 4069.050387 4187.031721 4231.619545 3951.656268 4235.027079 4862.258868 5162.708236 0.836954267 0.870556558 0.791153409 0.788161988 0.811014593 0.819651112 0.765423124 0.82031114 0.941803922 1 12.33391235 -9.251315231 0.355080855 1.071796233 0.790614872 0.831466893 0.028731379 0.547654515 0.091321346 0.060953017 0.009481975 5.61E-10 9.251315231 -0.281181362 AEVYGS(ph)ENESER ddPTM_HeLa_CUDC101_4h_R1 1 AEVYGSENESER 12 0 Q9BVS4-2;Q9BVS4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 0 AEVYGS(1)ENESER 179.83 8.63E-08 30577000 1732.3 1477.2 1385.5 1268.4 1363.4 1558.7 1254 1016.4 1548 386.88 TRUE FALSE FALSE 1529.24242 1522.710781 1460.404321 1320.130834 1262.824698 1528.970394 1302.3672 1132.102868 1484.190785 384.5788206 3.976408315 3.95942444 3.797412241 3.432666501 3.283656381 3.975700982 3.386476661 2.943747308 3.859262927 1 8.587135503 -9.251303693 0.888492221 0.931382727 3.618993082 0 0.931371293 0.15733126 0.214228207 0.283620738 0.070525311 5.61E-10 9.251303693 2.687610356 EAGEQGDIEPR ddPTM_HeLa_CUDC101_4h_R1 2 EAGEQGDIEPR 11 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 0 ; ; 152.64 0.0025222 62609000 5200.5 4698.4 4521.9 4776.3 5051.8 4611.6 4721.2 4913.5 5033.8 5694.5 FALSE FALSE TRUE 4590.905273 4843.152135 4766.367592 4971.098159 4679.138779 4523.641413 4903.298265 5472.832979 4826.304633 5660.628861 0.811023896 0.855585528 0.842020862 0.878188322 0.826611123 0.799141142 0.866210873 0.966824202 0.852609269 1 12.46674662 -9.369033076 1.024603617 1.002429725 0.850464483 0 0.062719685 0.29464749 0.539330204 0.033284158 0.00807776 4.28E-10 9.369033076 -0.151965241 LRLDTGS(ph)PEPETR ddPTM_HeLa_CUDC101_4h_R1 4 LRLDTGSPEPETR 13 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 LRLDT(0.35)GS(0.649)PEPET(0.001)R;LRLDT(0.042)GS(0.95)PEPET(0.008)R;LRLDT(0.053)GS(0.834)PEPET(0.113)R;LRLDT(0.002)GS(0.894)PEPET(0.103)R ;;; 98.408 0.00602 171228000 11373.8 9574.9 9363.9 9367.9 10946.6 10070.7 9758.4 8761.7 9316.9 8266.5 TRUE FALSE FALSE 10040.58041 9869.89132 9870.140758 9749.963454 10139.09113 9878.618176 10134.78476 9759.096512 8932.853439 8217.33049 1.221878616 1.201106774 1.20113713 1.18651227 1.233866782 1.202168781 1.233342722 1.187623709 1.087074866 1 13.00445408 -9.250537625 0.685591307 0.978013862 1.211780802 0.808153159 0.030914197 0.134800296 0.097495175 0.01871143 0.003648704 5.62E-10 9.250537625 0.23376694 KQSAGPNS(ph)PTGGGGGGGSGGTR ddPTM_HeLa_CUDC101_4h_R1 1 KQSAGPNSPTGGGGGGGSGGTR 22 1 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 KQS(0.04)AGPNS(0.599)PT(0.165)GGGGGGGS(0.098)GGT(0.098)R 55.819 0.010535 8364500 583.77 404.11 669.75 350.12 442.04 596.28 585.33 297.32 411.98 322.91 TRUE FALSE FALSE 515.3413655 416.5601501 705.9587109 364.3994069 409.4315899 584.9069525 607.9063742 331.165707 394.99801 320.989317 1.605478246 1.297738361 2.199321515 1.135238426 1.275530269 1.822200683 1.893852356 1.031703205 1.23056435 1 8.326381473 -9.250513779 0.775726071 0.964477926 1.552820796 0.16990166 0.352808817 0.813377309 0.795946919 0.302402446 0.066006983 5.62E-10 9.250513779 0.58834287 EAGVEMGDEDDLSTPNEK ddPTM_HeLa_CUDC101_4h_R1 4 EAGVEMGDEDDLSTPNEK 18 0 P14868-2;P14868;H7BZ35 P14868-2 DARS "Aspartate--tRNA ligase, cytoplasmic" 0 0 ;;; ;;; 335.1 2.35E-191 41982700 10337 9354.8 9197.7 8511.5 10444.9 10066.2 9128.7 9664.2 10345.6 10438.3 FALSE FALSE TRUE 9125.31253 9643.0103 9694.955484 8858.63576 9674.400536 9874.204006 9480.797017 10764.33346 9919.149989 10376.21253 0.879445415 0.929338164 0.934344344 0.853744633 0.932363375 0.951619291 0.913704976 1.037404875 0.955950927 1 13.34099231 -4.254771948 24.27227891 0.932946193 1.037404948 0.415079904 0.038593878 539.0917611 1962443.259 0.006970186 0.088703591 5.56E-05 4.254771948 0.104458755 EAHQLFLEPEVLDPESVELK ddPTM_HeLa_CUDC101_4h_R1 2 EAHQLFLEPEVLDPESVELK 20 0 P39748;P39748-2;I3L3E9 P39748 FEN1 Flap endonuclease 1 0 0 ; ; 168.05 2.96E-07 16277800 8084.6 7382.2 6776.7 6928.7 6923.6 6959.6 6569.7 5950.9 6681.7 7636.1 FALSE FALSE TRUE 7136.935443 7609.636832 7143.0689 7211.282334 6412.859822 6826.857225 6823.09553 6628.326402 6406.277498 7590.680138 0.940223447 1.002497364 0.941031472 0.950017944 0.844833362 0.899373587 0.89887802 0.873219037 0.843966204 1 12.89001344 -5.912236184 5.142348903 0.970768853 0.882202847 0.257100184 0.046771062 0.09078121 4.063294068 0.004260672 0.00783203 1.22E-06 5.912236184 -0.088566006 EAIEGTYIDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EAIEGTYIDKK 11 1 P62280;M0QZC5 P62280 RPS11 40S ribosomal protein S11 0 1 ; EAIEGTYIDK(1)K;EAIEGTYIDK(1)K 221.5 9.87E-20 9374000 4984.9 2052.19 2433.88 1896.3 4660.8 4511.7 4660.9 3634.9 3776.6 2885.4 FALSE TRUE FALSE 4400.577579 2115.415541 2565.462915 1973.639311 4316.98207 4425.64684 4840.672474 4048.682323 3620.92695 2868.237512 1.534244483 0.737531509 0.894438799 0.68810177 1.505099229 1.542984784 1.687681879 1.411557553 1.262422283 1 11.48594878 -5.557009109 24.98723573 1.148035674 1.555203712 0.449445787 0.258235227 181.6951682 133020.6183 0.046379845 0.092760019 2.77E-06 5.557009109 0.407168039 RNHGMGDT(ph)S(ph)IK ddPTM_HeLa_CUDC101_4h_R1 1 RNHGMGDTSIK 11 1 Q8WYQ5-3;Q8WYQ5 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 2 0 RNHGMGDT(1)S(1)IK 67.08 0.0031719 0 811.7 692.51 652.88 701.64 952.98 724.08 760.18 664.08 934.19 952.58 TRUE FALSE FALSE 716.5537565 713.8454123 688.1766677 730.2559119 882.680564 710.2693804 789.5003972 739.6761829 895.6822928 946.9140118 0.756725265 0.753865085 0.726757297 0.771195592 0.93216549 0.750088574 0.833761448 0.781143983 0.945896123 1 9.887089612 -9.250376578 0.930785465 1.00287437 0.788432237 0.617769349 0.057535298 0.281514764 0.428836606 0.041208516 0.010736595 5.62E-10 9.250376578 -0.214442133 KLS(ph)NPDIFSSTGK ddPTM_HeLa_CUDC101_4h_R1 1 KLSNPDIFSSTGK 13 1 Q6P0Q8;Q6P0Q8-2 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 KLS(1)NPDIFSSTGK 149.3 0.00077321 36924000 2222.6 1866.6 2017.8 1899.1 2163.5 2053.1 1864.3 1922.1 2195.5 2372.4 TRUE FALSE FALSE 1962.070197 1924.107734 2126.888372 1976.553507 2003.902915 2013.940538 1936.206675 2140.904095 2105.000561 2358.288859 0.831988918 0.815891457 0.901877801 0.838130367 0.849727508 0.853983824 0.821021847 0.907820976 0.892596576 1 11.20352472 -9.24958059 0.857179411 1.005360143 0.850458296 0.326966214 0.043638713 0.222961589 0.278528563 0.022814044 0.005490327 5.63E-10 9.24958059 -0.154901847 SVS(ph)KESVASMGADSGDDFASDGSSSR ddPTM_HeLa_CUDC101_4h_R1 2 SVSKESVASMGADSGDDFASDGSSSR 26 1 Q92805;Q5T165 Q92805 GOLGA1 Golgin subfamily A member 1 1 0 S(0.071)VS(0.64)KES(0.195)VAS(0.093)MGADS(0.001)GDDFASDGSSSR;S(0.051)VS(0.573)KES(0.154)VAS(0.215)MGADS(0.007)GDDFASDGSSSR ; 69.528 0.00022738 40964000 3859.2 3319.3 2940.99 2997.06 3916 3519.2 4127.8 3778.8 3853.5 4515.7 TRUE FALSE FALSE 3406.830426 3421.563699 3099.988815 3119.293061 3627.124482 3452.077123 4287.010629 4208.963318 3694.657099 4488.840416 0.758955568 0.762237768 0.690599025 0.694899522 0.808031506 0.769035386 0.955037433 0.937650468 0.823076064 1 12.13212709 -9.249341653 0.973462646 1.000358671 0.792700312 0.077748477 0.099191685 0.436155921 0.739504927 0.062797304 0.017112535 5.63E-10 9.249341653 -0.207658359 SRSPES(ph)QVIGENTK ddPTM_HeLa_CUDC101_4h_R1 1 SRSPESQVIGENTK 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 SRS(0.004)PES(0.996)QVIGENTK 161.49 0.00020363 35865000 2684 2370.6 1874 2175.8 2549.8 2653.7 2481.5 3357 2651.8 3360.5 TRUE FALSE FALSE 2369.385589 2443.635376 1975.314109 2264.538529 2361.706334 2603.085094 2577.212286 3739.147311 2542.491682 3340.511597 0.709288239 0.73151531 0.591320836 0.677901712 0.706989413 0.779247435 0.771502272 1.119333732 0.761108473 1 11.70585335 -9.248625001 0.966394891 1.000844804 0.749492962 0 0.149642576 0.518665244 0.864572526 0.090135282 0.0244131 5.64E-10 9.248625001 -0.251351842 EALLDESRPLFER ddPTM_HeLa_CUDC101_4h_R1 1 EALLDESRPLFER 13 1 A0A5F9ZGM7;Q9BU89 A0A5F9ZGM7 DOHH Deoxyhypusine hydroxylase 0 0 96.334 0.015059 5716300 1444.8 1512.5 1184.8 1046 1340.8 1296.7 1086.6 1086.6 1338.1 1550.4 FALSE FALSE TRUE 1275.442734 1559.098332 1248.853872 1088.660401 1241.891855 1271.967608 1128.510526 1210.294152 1282.942952 1541.178152 0.827576444 1.011627585 0.810324147 0.706381932 0.805806813 0.825321593 0.732238855 0.785304509 0.832442992 1 10.58981792 -13.52287875 0.105194832 1.660236347 0.67198636 0.204764596 0.084408734 61.25667788 0.477080663 8.77329809 0.511334869 3.00E-14 13.52287875 -0.988249988 EALLGVQEDVDEYVK ddPTM_HeLa_CUDC101_4h_R1 1 EALLGVQEDVDEYVK 15 0 Q14257;Q14257-2;H0YL43 Q14257 RCN2 Reticulocalbin-2 0 0 148.41 0.0014192 2415200 1141.2 1323 982.43 959.88 1315.5 980.72 1244.3 942.55 1008.7 1349.8 FALSE FALSE TRUE 1007.430266 1363.760062 1035.543137 999.0280554 1218.458186 962.0144 1292.293068 1049.846082 967.1209591 1341.77133 0.75082113 1.016387839 0.771773189 0.744559101 0.908096752 0.716973436 0.963124669 0.782432937 0.72077927 1 10.38992311 -9.5071318 1.185560105 1.002502724 0.826582737 0 0.128261975 0.458496132 1.126409364 0.06754579 0.015380284 3.11E-10 9.5071318 -0.175919986 EALNSCNK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 EALNSCNKR 9 1 P19338;H7BY16 P19338 NCL Nucleolin 0 1 EALNSCNK(1)R 87.806 0.032611 816790 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 ESS(ph)PEKEAEEGCPEKESEEGCPK ddPTM_HeLa_CUDC101_4h_R1 2 ESSPEKEAEEGCPEKESEEGCPK 23 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ES(0.204)S(0.796)PEKEAEEGCPEKESEEGCPK;ES(0.056)S(0.944)PEKEAEEGCPEKESEEGCPK ; 92.716 7.32E-05 586160000 7171.5 5836.6 5672.3 6038.9 6033.7 5779.3 4524.9 4845.8 5985.2 1338.61 TRUE FALSE FALSE 6330.867641 6016.418728 5978.961696 6285.192444 5588.605972 5669.069481 4699.426909 5397.426285 5738.487523 1330.647888 4.757733205 4.521420566 4.493271097 4.723407672 4.199913457 4.260382879 3.531683288 4.05623932 4.312551482 1 10.37791315 -9.248189716 0.86638327 0.892381714 4.333461855 0 1.064265536 0.14394636 0.184653259 0.328491659 0.080032732 5.65E-10 9.248189716 3.44108014 EALQDVEDENQ ddPTM_HeLa_CUDC101_4h_R1 2 EALQDVEDENQ 11 0 P62258;P62258-2;I3L0W5 P62258 YWHAE 14-3-3 protein epsilon 0 0 ; ; 150.27 1.27E-06 4975400 7847 6985.7 6540 5591.5 5820.5 6624.4 6187 5739.6 7546.3 8443.8 FALSE FALSE TRUE 6927.186555 7200.921137 6893.572182 5819.545539 5391.133311 6498.050607 6425.634663 6392.972864 7235.23832 8393.575902 0.825296231 0.857908622 0.821291457 0.693333283 0.642292793 0.774169518 0.765541974 0.761650688 0.861997128 1 13.03506986 -8.36612371 0.360940096 1.035065108 0.722226435 0.532625088 0.064082188 0.575159176 0.165300991 0.073243605 0.029056552 4.30E-09 8.36612371 -0.312838673 SAS(ph)SDTSEELNSQDSPPK ddPTM_HeLa_CUDC101_4h_R1 1 SASSDTSEELNSQDSPPK 18 0 O14745;J3QRP6;O14745-2 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 0 S(0.074)AS(0.46)S(0.46)DT(0.004)S(0.001)EELNSQDSPPK 82.349 0.0081472 96912000 1285.6 1022 1193 1451.7 1157.2 1458.2 1008.7 1086.4 1289 1830.9 TRUE FALSE FALSE 1134.903917 1053.486609 1257.497189 1510.906601 1071.835661 1430.387265 1047.605897 1210.071385 1235.866874 1820.009725 0.623570249 0.578835703 0.690928829 0.830164026 0.588917546 0.785922869 0.57560456 0.664870834 0.679044105 1 10.82973044 -9.247708086 0.881726342 1.009212303 0.667108367 0.021330768 0.126837845 0.272367355 0.364629475 0.062225269 0.01543266 5.65E-10 9.247708086 -0.342103936 EALTYDGALLGDR ddPTM_HeLa_CUDC101_4h_R1 2 EALTYDGALLGDR 13 0 Q15056;Q15056-2 Q15056 EIF4H Eukaryotic translation initiation factor 4H 0 0 ; ; 147.62 0.0025006 43470000 3273 2716.6 2245.07 2432 2459.1 2773.3 2258.9 2402.4 2942.7 3403.2 FALSE FALSE TRUE 2889.343902 2800.295226 2366.445275 2531.187472 2277.697092 2720.403923 2346.02653 2675.879505 2821.40066 3382.957615 0.854088118 0.827765389 0.699519635 0.748217318 0.673285731 0.804149573 0.693483867 0.790988185 0.834004141 1 11.72406939 -7.868088532 0.572785138 0.989059496 0.728004327 0.492316646 0.065527001 0.198729571 0.152533026 0.020003844 0.01439753 1.35E-08 7.868088532 -0.261055168 EAMEDGEIDGNK ddPTM_HeLa_CUDC101_4h_R1 5 EAMEDGEIDGNK 12 0 P19338;H7BY16 P19338 NCL Nucleolin 0 0 ;;;; ;;;; 224.75 1.02E-31 92342000 20826.2 17484.5 17545.6 16771.3 16674.7 17468 15527.8 15071.1 18183.2 21934.6 FALSE FALSE TRUE 18384.98441 18023.17672 18494.16821 17455.30611 15444.6406 17134.827 16126.71245 16786.7331 17433.6808 21804.13202 0.843188089 0.826594551 0.848195571 0.800550377 0.708335493 0.785852286 0.739617263 0.769887702 0.799558578 1 14.41231394 -9.127281595 0.208228563 1.145528743 0.710685051 0.165571837 0.068703737 1.426767698 0.103648514 0.177038704 0.044771246 7.46E-10 9.127281595 -0.434843692 EAMNDPLLER ddPTM_HeLa_CUDC101_4h_R1 1 EAMNDPLLER 10 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 0 114.89 0.031876 5256900 2956.2 2803.6 2843 2327.3 2934.5 2623 3148.6 2842 3047.8 3188.6 FALSE FALSE TRUE 2609.678717 2889.975593 2996.70118 2422.217353 2718.027781 2572.970645 3270.042557 3165.521792 2922.168394 3169.634065 0.823337541 0.911769477 0.945440741 0.764194637 0.857521003 0.811756371 1.03167826 0.998702603 0.921926107 1 11.63010058 -4.739028283 24.94147137 0.895911572 1.015190544 0.372835738 0.067772976 256.651704 285624.9121 0.011765884 0.043954323 1.82E-05 4.739028283 0.119278973 DSISS(ph)DSETSEPLSCR ddPTM_HeLa_CUDC101_4h_R1 1 DSISSDSETSEPLSCR 16 0 O75164 O75164 KDM4A Lysine-specific demethylase 4A 1 0 DSIS(0.429)S(0.571)DSETSEPLSCR 227.63 5.98E-33 4166700 1109.8 996.91 1014.5 946.71 1044.4 808.26 797.52 780.88 1160.1 725.42 TRUE FALSE FALSE 979.7109263 1027.623615 1069.346939 985.3209258 967.3566927 792.8437872 828.2806136 869.7722228 1112.280187 721.1051696 1.358624189 1.425067603 1.48292785 1.366403914 1.341491829 1.099484265 1.148626648 1.206165563 1.542465973 1 9.494065874 -9.24758271 1.01362131 1.002568682 1.306064147 0 0.201946164 0.397530253 0.741730455 0.084716733 0.024053515 5.65E-10 9.24758271 0.303495465 AASAPAKES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 AASAPAKESPR 11 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AASAPAKES(1)PR;AASAPAKES(1)PR ; 82.705 0.019726 18419900 8220.6 5283.1 8540.9 10761.4 8072 7684.6 9157.8 5311.7 11257.6 12985.6 TRUE FALSE FALSE 7256.99373 5445.866049 9002.646889 11200.29641 7476.544642 7538.029058 9511.019414 5916.362457 10793.55696 12908.36107 0.562193271 0.421886715 0.697427569 0.86767765 0.579201697 0.583964844 0.736810766 0.458335681 0.836167884 1 13.65601822 -9.247197948 0.939239448 1.004151064 0.618842749 0.440232971 0.132628623 0.341129939 0.531645424 0.089907778 0.023732605 5.66E-10 9.247197948 -0.385308315 VIPEDAS(ph)ESEEKLDQK ddPTM_HeLa_CUDC101_4h_R1 2 VIPEDASESEEKLDQK 16 1 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 VIPEDAS(0.961)ES(0.039)EEKLDQK;VIPEDAS(0.856)ES(0.144)EEKLDQK ; 90.422 0.0048345 100076000 6196.9 5196.4 5807 5099.9 5148.7 5384.7 5418.3 6179.1 5582.1 6313.8 TRUE FALSE FALSE 5470.508776 5356.494925 6120.943985 5307.895966 4768.890659 5281.995819 5627.285646 6882.503767 5352.003475 6276.245237 0.871621259 0.853455326 0.975255707 0.845712009 0.759831791 0.841585314 0.896600664 1.096595736 0.852739699 1 12.61568601 -9.247153386 0.85964736 1.00391957 0.885757387 0 0.096795264 0.878507009 1.106312862 0.068594628 0.016608683 5.66E-10 9.247153386 -0.118162182 SEGEGEAASADDGSLNT(ph)SGAGPK ddPTM_HeLa_CUDC101_4h_R1 1 SEGEGEAASADDGSLNTSGAGPK 23 0 M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8;M0R2I2 M0QXG9 BABAM1 BRISC and BRCA1-A complex member 1 1 0 SEGEGEAASADDGS(0.001)LNT(0.5)S(0.5)GAGPK 117.48 1.69E-06 11563000 4344.6 3895.5 3435.1 3858.3 3903.6 3896.8 3636 4181.9 3949.6 4414.4 TRUE FALSE FALSE 3835.332574 4015.515738 3620.811897 4015.658151 3615.639205 3822.475033 3776.241738 4657.950592 3786.795816 4388.142952 0.874021794 0.915083164 0.825135356 0.915115618 0.823956568 0.871091729 0.86055577 1.061485609 0.862960906 1 12.09939481 -9.247034773 0.840345166 1.004511193 0.887447686 0 0.076534275 0.643913521 0.767399494 0.049332368 0.011685279 5.66E-10 9.247034773 -0.117063507 LLQDSS(ph)SPVDLAK ddPTM_HeLa_CUDC101_4h_R1 2 LLQDSSSPVDLAK 13 0 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 1 0 LLQDSS(0.5)S(0.5)PVDLAK;LLQDS(0.001)S(0.5)S(0.5)PVDLAK ; 122.1 0.0019994 58742000 9593.8 8778.2 7926.6 7903.7 8789.4 8116.3 8843.1 8482 10114 10146.8 TRUE FALSE FALSE 8469.229307 9048.645937 8355.135973 8226.047049 8141.023473 7961.4951 9184.181329 9447.556595 9697.096639 10086.44638 0.839664336 0.897109407 0.828352787 0.815554531 0.807125043 0.789326072 0.910546785 0.936658585 0.96139872 1 13.30013036 -9.247013679 0.695474846 1.014696699 0.848305412 0.535747895 0.04692075 0.516364496 0.387477961 0.051361159 0.010190042 5.66E-10 9.247013679 -0.166391287 S(ph)AAQAAAQTNSNAAGK ddPTM_HeLa_CUDC101_4h_R1 2 SAAQAAAQTNSNAAGK 16 0 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 S(1)AAQAAAQTNSNAAGK;S(1)AAQAAAQTNSNAAGK ; 240.13 1.11E-43 10035400 3732.5 2746.7 4049.5 3631.8 3730.5 3066.7 3197.5 2782.2 4205.5 4577.9 TRUE FALSE FALSE 3294.982008 2831.322571 4268.428219 3779.920502 3455.308447 3008.207807 3320.828646 3098.914402 4032.14751 4550.670447 0.724065178 0.622177019 0.93797788 0.830629365 0.759296567 0.661047167 0.729744921 0.680979745 0.886055705 1 12.1518634 -9.246994242 0.760223647 1.018277823 0.743938521 0.409591141 0.091566902 0.486426349 0.453836856 0.083431092 0.017953317 5.66E-10 9.246994242 -0.274339303 S(ph)PSGPPAMDLEGPR ddPTM_HeLa_CUDC101_4h_R1 2 SPSGPPAMDLEGPR 14 0 O96018 O96018 APBA3 Amyloid beta A4 precursor protein-binding family A member 3 1 0 S(1)PSGPPAMDLEGPR;S(1)PSGPPAMDLEGPR ; 157.09 6.67E-05 19531200 559.32 507.89 453.68 469.56 332.85 660.15 461.88 387.64 471.98 417.26 TRUE FALSE FALSE 493.7573575 523.5374889 478.2073131 488.7106864 308.2963186 647.5587386 479.6948663 431.7673707 452.5247846 414.778119 1.190413223 1.262210963 1.152923193 1.178246065 0.743280093 1.561217212 1.156509576 1.040959855 1.091004477 1 8.696195979 -9.246639475 0.976385014 0.99985207 1.16424994 0.046806074 0.191802217 1.068006966 1.825433527 0.121723133 0.03338505 5.67E-10 9.246639475 0.16439787 YLVDGTKPNAGSEEISS(ph)EDDELVEEK ddPTM_HeLa_CUDC101_4h_R1 1 YLVDGTKPNAGSEEISSEDDELVEEK 26 1 Q9NY61 Q9NY61 AATF Protein AATF 1 0 YLVDGTKPNAGSEEIS(0.078)S(0.922)EDDELVEEK 103.64 5.20E-07 0 551.1 556.8 397.32 510.29 674.17 548.41 536.68 375.7 765.83 904.11 TRUE FALSE FALSE 486.5008934 573.954348 418.800321 531.1018319 624.4378222 537.949993 557.3799274 418.4681694 734.2621633 898.7323135 0.541319018 0.638626585 0.465990056 0.590945517 0.694798454 0.598565318 0.620184586 0.465620478 0.816997622 1 9.811747664 -9.246414937 0.764751881 1.028712554 0.577631831 0.679797161 0.087437564 0.229040861 0.216889114 0.064767617 0.01402632 5.67E-10 9.246414937 -0.451080724 GVPGCCYSS(ph)LPR ddPTM_HeLa_CUDC101_4h_R1 1 GVPGCCYSSLPR 12 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 GVPGCCYS(0.059)S(0.941)LPR 94.538 0.016162 27976000 1149.1 898.83 1013 1006 1123.1 945.25 889.7 1155 839.71 290.39 TRUE FALSE FALSE 1014.40424 926.5218869 1067.765844 1047.029028 1040.251151 927.2209311 924.016027 1286.480531 805.0967984 288.6627474 3.51415016 3.209703695 3.699008112 3.627170592 3.603690327 3.212125359 3.20102277 4.456690526 2.7890568 1 8.173241126 -9.246414237 0.552516018 0.537143979 3.615607235 0.420534542 0.649132546 0.299968229 0.129704158 0.484580771 0.080895679 5.67E-10 9.246414237 3.078463256 RSSPDDGNDVS(ph)PYSLSPVSNK ddPTM_HeLa_CUDC101_4h_R1 1 RSSPDDGNDVSPYSLSPVSNK 21 1 K7EQT1;Q9UM11-2;Q9UM11 K7EQT1 FZR1 Fizzy-related protein homolog 1 0 RS(0.081)S(0.061)PDDGNDVS(0.573)PY(0.184)S(0.084)LS(0.018)PVSNK 54.457 0.016992 7348700 1411.8 1282.3 1181 1342.2 1282.1 1401.9 1110.4 1192.7 1679.6 1923 TRUE FALSE FALSE 1246.310944 1321.806143 1244.848432 1396.940717 1187.522037 1375.161093 1153.2285 1328.472147 1610.366177 1911.56191 0.651985655 0.691479641 0.651220568 0.730784972 0.621231272 0.719391345 0.603291211 0.694966843 0.842434748 1 10.90053621 -9.24637219 0.674366419 1.036178161 0.665236575 0.703451921 0.061531967 0.185529318 0.129190667 0.040467162 0.007823664 5.67E-10 9.24637219 -0.370941586 S(ph)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ddPTM_HeLa_CUDC101_4h_R1 4 SPQPPVEEEDEHFDDTVVCLDTYNCDLHFK 30 0 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;Q5RI18;A0A1W2PRI6 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 S(0.998)PQPPVEEEDEHFDDT(0.002)VVCLDTYNCDLHFK;S(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;S(0.997)PQPPVEEEDEHFDDT(0.003)VVCLDTYNCDLHFK;S(0.956)PQPPVEEEDEHFDDT(0.043)VVCLDTYNCDLHFK ;;; 137.26 1.76E-16 266346000 13375.8 10697.2 10694.9 10543.76 10598.5 11648.3 10296.65 9437.45 11306.5 3191.02 TRUE FALSE FALSE 11807.909 11026.76805 11273.09864 10973.78011 9816.66977 11426.12808 10693.79524 10511.77116 10840.44128 3172.039671 3.722497265 3.476239012 3.553895857 3.45953432 3.094749999 3.602139087 3.371267811 3.313883889 3.417498647 1 11.6311951 -9.246346806 0.810870057 0.875067963 3.464192359 0 0.757344096 0.107392179 0.117356668 0.179105052 0.041020332 5.67E-10 9.246346806 2.589124396 T(ph)PPRDLPTIPGVTSPS(ph)SDEPPMEASQSHLR ddPTM_HeLa_CUDC101_4h_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.959)PPRDLPT(0.049)IPGVT(0.273)S(0.262)PS(0.384)S(0.074)DEPPMEASQSHLR 71.085 2.52E-05 5186000 541.26 473.51 492.53 414.58 531.44 618.22 531.14 235.84 612.3 727.94 TRUE FALSE FALSE 477.8143233 488.0982819 519.1576616 431.4883644 492.23673 606.4284835 551.6262477 262.6870723 587.0607348 723.6101805 0.660320068 0.674532082 0.717454889 0.596299466 0.68025125 0.838059635 0.762325162 0.363022908 0.811294189 1 9.499068895 -9.245898298 0.63547079 1.042883968 0.665424868 0.31668189 0.131089115 0.643834509 0.388311946 0.138309607 0.025478777 5.68E-10 9.245898298 -0.3774591 EAPPMEK(ac)PEVVK ddPTM_HeLa_CUDC101_4h_R1 5 EAPPMEKPEVVK 12 1 K7EM56;A0A0B4J2B4;S4R417;K7EQJ5;K7ELC2;P62841;S4R456;K7EJ78 K7EM56 RPS15 40S ribosomal protein S15 0 1 ;;;; EAPPMEK(1)PEVVK;EAPPMEK(1)PEVVK;EAPPMEK(1)PEVVK;EAPPMEK(1)PEVVK;EAPPMEK(1)PEVVK 142.1 6.51E-05 9874700 4192.5 1394.48 1671.29 1482.8 4055.04 3837.84 4044.26 3694.14 3839.7 2545.15 FALSE TRUE FALSE 3701.061505 1437.442276 1761.644993 1543.274993 3755.907778 3764.639596 4200.248463 4114.665965 3681.425941 2530.011335 1.462863606 0.568156457 0.696299249 0.609987383 1.484541878 1.487993174 1.66016982 1.626342898 1.455102549 1 11.30492813 -5.547967793 24.78277917 1.086277101 1.579685374 0.451776528 0.308178373 187.8735432 185579.5349 0.051533108 0.103069331 2.83E-06 5.547967793 0.493408273 SNDRNS(ph)MDIQCEVDALLER ddPTM_HeLa_CUDC101_4h_R1 6 SNDRNSMDIQCEVDALLER 19 1 Q02241;A0A2U3TZL8;H7BYN4;A0A2R8Y531;H0YME6;Q02241-2 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 S(0.001)NDRNS(0.999)MDIQCEVDALLER;S(0.072)NDRNS(0.928)MDIQCEVDALLER;S(0.019)NDRNS(0.981)MDIQCEVDALLER;S(0.024)NDRNS(0.976)MDIQCEVDALLER;S(0.043)NDRNS(0.957)MDIQCEVDALLER;S(0.285)NDRNS(0.715)MDIQCEVDALLER ;;;;; 180.64 1.66E-09 90377200 12463.15 11618.59 9823.55 9896.31 10711.68 10962.35 9925.3 8572.52 11374.89 7665.88 TRUE FALSE FALSE 11002.23845 11976.54499 10354.64083 10299.9243 9921.500707 10753.26144 10308.12215 9548.381025 10906.01222 7620.283005 1.443809691 1.571666693 1.358826283 1.351645902 1.301985858 1.411136756 1.352721695 1.253021839 1.431182046 1 12.89562886 -9.244098037 0.967090269 0.998994937 1.384039404 0 0.154080959 0.227433403 0.380374692 0.060448013 0.016482064 5.70E-10 9.244098037 0.385044467 RPWRPEEAVEDPDEEDEDNTS(ph)EAENGFSLEEVLR ddPTM_HeLa_CUDC101_4h_R1 1 RPWRPEEAVEDPDEEDEDNTSEAENGFSLEEVLR 34 2 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 RPWRPEEAVEDPDEEDEDNT(0.324)S(0.675)EAENGFS(0.001)LEEVLR 67.606 2.61E-05 28039000 715.68 667.31 400.6 680.07 630.07 602.57 577.01 643.24 667.62 283.96 TRUE FALSE FALSE 631.7890753 687.8690301 422.2576477 707.8061941 583.5909914 591.0769812 599.265469 716.4638415 640.100421 282.2709933 2.238235916 2.436910085 1.495930003 2.507541373 2.067484812 2.094005389 2.123014703 2.538212776 2.267680478 1 8.140937072 -9.243658256 0.684534146 0.877226147 2.189958951 0 0.483624808 0.374871941 0.271125462 0.29149637 0.057296272 5.71E-10 9.243658256 1.312732804 EAYSGCSGPVDSECPPPPSS(ph)PVHK ddPTM_HeLa_CUDC101_4h_R1 1 EAYSGCSGPVDSECPPPPSSPVHK 24 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 EAYSGCSGPVDSECPPPPS(0.228)S(0.772)PVHK 128.47 6.46E-09 14515000 1866.9 1840.9 1891.9 1618.6 2196.7 2034.7 2186.6 1992.5 1818.6 849.17 TRUE FALSE FALSE 1648.064812 1897.615947 1994.181837 1684.613504 2034.653817 1995.891488 2270.937894 2219.318146 1743.636538 844.1190991 1.952407917 2.248042899 2.362441318 1.995705945 2.410387136 2.364466685 2.690305073 2.629152863 2.065628583 1 9.721302757 -9.243584954 0.202609579 1.54E-19 2.825058201 0.36627458 0.362866788 1.28852967 0.084506843 1.006031873 0.237688394 5.71E-10 9.243584954 2.825058201 AMAATLGAGT(ph)PPRPQAR ddPTM_HeLa_CUDC101_4h_R1 1 AMAATLGAGTPPRPQAR 17 1 P58107 P58107 EPPK1 Epiplakin 1 0 AMAAT(0.001)LGAGT(0.999)PPRPQAR 77.795 0.018145 50202000 985.74 851.01 948.85 757.22 931.18 718.46 698.84 956.71 929.5 772.23 TRUE FALSE FALSE 870.1930515 877.2286094 1000.147701 788.1027046 862.4887066 704.7565725 725.7944929 1065.617999 891.1856166 767.6367416 1.133600054 1.142765271 1.302891911 1.026661 1.123563607 0.918086035 0.945492123 1.388180036 1.160947058 1 9.584279955 -9.243567413 1.033502925 1.001582146 1.113762743 0 0.145121172 1.059067277 2.070230405 0.083783423 0.024356409 5.71E-10 9.243567413 0.112180597 EAQMAAK(ac)LER ddPTM_HeLa_CUDC101_4h_R1 2 EAQMAAKLER 10 1 P16949;P16949-2 P16949 STMN1 Stathmin 0 1 ; EAQMAAK(1)LER;EAQMAAK(1)LER 103.08 0.0092274 14282200 2171.3 2144.3 1871.58 2296.7 2399 2126.7 1837.91 2304.8 1881.53 1457.89 FALSE TRUE FALSE 1916.783505 2210.363341 1972.763276 2390.369353 2222.030549 2086.136741 1908.798804 2567.169116 1803.972537 1449.218405 1.322632599 1.525210647 1.361260158 1.649419676 1.533261337 1.439490924 1.317122938 1.771416307 1.244789971 1 10.50105932 -8.261251255 0.483438986 0.979604474 1.535265752 0.520950676 0.143672702 0.369862571 0.193620086 0.088913368 0.041560073 5.48E-09 8.261251255 0.555661278 SNS(ph)APLIHGLSDTSPVFQAEAPSAR ddPTM_HeLa_CUDC101_4h_R1 1 SNSAPLIHGLSDTSPVFQAEAPSAR 25 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 S(0.185)NS(0.815)APLIHGLSDTSPVFQAEAPSAR 114.51 6.24E-08 127590000 1389.6 1166.6 1104.7 981.52 1858.1 1305 1280.3 1396.5 1904.6 1835.2 TRUE FALSE FALSE 1226.713194 1202.541563 1164.423424 1021.550628 1721.031665 1280.109299 1329.6816 1555.471915 1826.091582 1824.284149 0.672435374 0.659185448 0.6382906 0.559973417 0.943401096 0.701704995 0.728878558 0.852647827 1.000990763 1 10.83311474 -9.2434246 0.950255157 1.001898833 0.715538814 0.536496567 0.103795651 0.368663675 0.591566147 0.072405289 0.019427287 5.71E-10 9.2434246 -0.286360019 DLVMGS(ph)SPQLKR ddPTM_HeLa_CUDC101_4h_R1 1 DLVMGSSPQLKR 12 1 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 0 DLVMGS(0.5)S(0.5)PQLKR 124.47 0.0053534 68206000 2284.5 1926 1900.7 1900.2 2287.9 1914.3 1775.6 2013.7 2413.1 1773.5 TRUE FALSE FALSE 2016.714373 1985.337777 2003.457591 1977.698369 2119.126175 1877.787917 1844.085487 2242.931468 2313.630997 1762.951143 1.143942293 1.126144525 1.136422639 1.121811218 1.202033411 1.065138943 1.04602189 1.272259573 1.312362515 1 10.78377678 -9.242810007 0.706122239 0.98744276 1.136401354 0 0.114739538 0.659731274 0.514929471 0.059150662 0.011962629 5.72E-10 9.242810007 0.148958593 ESS(ph)PLYSPT(ph)FSDSTSAVK ddPTM_HeLa_CUDC101_4h_R1 2 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 ES(0.012)S(0.988)PLYS(0.229)PT(0.314)FS(0.314)DS(0.135)T(0.006)S(0.001)AVK;ES(0.108)S(0.892)PLYS(0.008)PT(0.736)FS(0.251)DS(0.004)T(0.001)S(0.001)AVK ; 174.19 6.97E-07 236736700 9415.7 8608.8 7409 7296.5 9170.5 8839.5 7971.3 7996.1 9603.9 8753.9 TRUE FALSE FALSE 8312.005919 8874.026924 7809.552951 7594.082808 8494.010485 8670.901265 8278.755711 8906.343703 9208.023177 8701.831413 0.955201902 1.019788422 0.897460842 0.872699372 0.976117564 0.996445559 0.951380844 1.023502212 1.058170716 1 13.08710335 -9.242502673 0.739468722 1.002993873 0.958964545 0.180764685 0.049401028 1.677451399 1.465873792 0.045498722 0.009599955 5.72E-10 9.242502673 -0.044029328 AFNRS(ph)S(ph)ILSIHK ddPTM_HeLa_CUDC101_4h_R1 1 AFNRSSILSIHK 12 1 Q6ZR52;Q6ZR52-2 Q6ZR52 ZNF493 Zinc finger protein 493 2 0 AFNRS(1)S(1)ILSIHK 51.252 0.03008 9130900 5111 4562.5 4331.3 3944.8 3606.7 3743.9 3744.3 2459.6 4735.7 190.56 TRUE FALSE FALSE 4511.896328 4703.065217 4565.463179 4105.685995 3340.640927 3672.491345 3888.718905 2739.590922 4540.492442 189.4265406 23.81871259 24.8279106 24.10149689 21.67429116 17.6355484 19.38741706 20.52890209 14.46255056 23.96967408 1 7.565494671 -9.242289406 0.918158337 0.692448695 21.00527515 0 7.614127267 0.179971312 0.26617079 2.474924909 0.643221774 5.72E-10 9.242289406 20.31282646 ALRPPT(ph)SPGVFGALQNFK ddPTM_HeLa_CUDC101_4h_R1 1 ALRPPTSPGVFGALQNFK 18 1 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 ALRPPT(0.617)S(0.383)PGVFGALQNFK 88.561 0.0067787 6910800 971.94 785.39 1004.5 870.31 881.5 1043.3 698.86 773.32 1104.7 1496.1 TRUE FALSE FALSE 858.0106666 809.586935 1058.806308 905.8050036 816.4735012 1023.400791 725.8152643 861.3516229 1059.163798 1487.201131 0.576929811 0.544369499 0.711945605 0.609066914 0.549000054 0.688138793 0.488041092 0.579176283 0.712185983 1 10.53838406 -9.241971024 0.660752254 1.047063832 0.588076333 0.382533842 0.10862959 0.269870871 0.179271148 0.071967383 0.013757449 5.73E-10 9.241971024 -0.458987499 EARDLCQAHGLPLDGEER ddPTM_HeLa_CUDC101_4h_R1 1 EARDLCQAHGLPLDGEER 18 1 F8WC89;A6NKF1 F8WC89 SAC3D1 SAC3 domain-containing protein 1 0 0 69.805 0.023946 5125500 1198.1 920.57 1142.8 1042.2 1280.6 1134.8 1036.1 1364.3 993.86 1087.5 FALSE FALSE TRUE 1057.660534 948.9316706 1204.583225 1084.705421 1186.132689 1113.155581 1076.062724 1519.606397 952.8926701 1081.031502 0.978380864 0.877802052 1.114290585 1.003398531 1.097223057 1.029716136 0.99540367 1.405700384 0.881466145 1 10.07819285 -4.260915223 24.76646485 1.001446463 1.405700521 0.738805225 0.072776222 12.28555083 580311.7551 0.008333986 0.066431865 5.48E-05 4.260915223 0.404254058 S(ph)PSPEPIYNS(ph)EGKR ddPTM_HeLa_CUDC101_4h_R1 1 SPSPEPIYNSEGKR 14 1 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637;Q15637-7;Q15637-5 Q15637-6 SF1 Splicing factor 1 2 0 S(0.982)PS(0.247)PEPIY(0.002)NS(0.769)EGKR 86.777 0.035504 20427000 2283.6 2015 1951.7 1682.7 2226.3 2244.5 1805.7 1967.2 2156 2117.2 TRUE FALSE FALSE 2015.91987 2077.079762 2057.214806 1751.327779 2062.070284 2201.689902 1875.346454 2191.138096 2067.128767 2104.6068 0.95786057 0.986920579 0.977481782 0.832140131 0.979788854 1.046128855 0.891067374 1.041115184 0.982192383 1 11.03933501 -9.241690158 0.738117824 1.002917506 0.961091859 0.026208094 0.060606449 2.18960607 1.905685273 0.056354333 0.011883461 5.73E-10 9.241690158 -0.041825647 LDRPAGGPS(ph)AESPRPSSAYNGDLNGLLVPDPLCSGDSTSANK ddPTM_HeLa_CUDC101_4h_R1 1 LDRPAGGPSAESPRPSSAYNGDLNGLLVPDPLCSGDSTSANK 42 2 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 LDRPAGGPS(0.227)AES(0.197)PRPS(0.197)S(0.197)AY(0.183)NGDLNGLLVPDPLCSGDSTSANK 59.364 5.66E-05 18736000 613.16 483.31 522.01 565.26 687.07 420.25 432.89 507.82 604.51 419.37 TRUE FALSE FALSE 541.2863143 498.2002082 550.2314396 588.3137461 636.3862149 412.2344314 449.5867123 565.6281761 579.5918419 416.8755686 1.298436164 1.195081328 1.319893707 1.411245442 1.526561552 0.988866853 1.078467404 1.356827357 1.390323362 1 8.703473014 -9.240933391 0.803048057 0.986091278 1.270721004 0 0.190508045 0.733933804 0.785282133 0.133745227 0.030571281 5.74E-10 9.240933391 0.284629725 AAS(ph)DTERDGLAPEK ddPTM_HeLa_CUDC101_4h_R1 1 AASDTERDGLAPEK 14 1 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 AAS(0.5)DT(0.5)ERDGLAPEK 107.82 0.020501 7565300 1752.6 1542.1 1498.4 1549.8 1851.4 1881 1384.4 1369.6 1893.2 2227.7 TRUE FALSE FALSE 1547.162885 1589.610273 1579.408036 1613.007543 1714.825911 1845.123059 1437.796772 1525.509728 1815.161495 2214.449541 0.69866703 0.7178354 0.71322828 0.728401128 0.774380214 0.833219735 0.649279536 0.688888909 0.819689707 1 11.11273241 -9.240055332 0.803436129 1.01425506 0.725513898 0.440042998 0.072053671 0.238434184 0.255522647 0.044074994 0.010091293 5.75E-10 9.240055332 -0.288741161 IISPGSSTPSSTRS(ph)PPPGR ddPTM_HeLa_CUDC101_4h_R1 2 IISPGSSTPSSTRSPPPGR 19 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 IISPGSS(0.001)T(0.001)PS(0.046)S(0.229)T(0.229)RS(0.495)PPPGR;IISPGSS(0.001)T(0.001)PS(0.09)S(0.09)T(0.09)RS(0.727)PPPGR ; 73.404 0.0063755 28621000 3506.2 3016.92 3053.67 2914.63 3189.71 3198.98 2825.7 2893.86 3301.85 3938.6 TRUE FALSE FALSE 3095.208551 3109.867729 3218.760637 3033.50121 2954.411448 3137.964786 2934.688196 3223.285325 3165.746345 3915.173032 0.790567499 0.794311696 0.822124747 0.774806422 0.754605588 0.801488149 0.749567943 0.823280427 0.808584019 1 11.93486035 -9.239859842 0.55006853 1.03868088 0.781045042 0.095983008 0.063812191 0.242644254 0.104237421 0.032685969 0.005488659 5.76E-10 9.239859842 -0.257635838 EASDPQPEEADGGLK ddPTM_HeLa_CUDC101_4h_R1 1 EASDPQPEEADGGLK 15 0 P52907 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 0 0 242.8 1.01E-43 4317100 2029.1 1980.3 1770.9 1695 1886.6 1883.6 1729.2 2121.3 1751.5 1785.3 FALSE FALSE TRUE 1791.251974 2041.310696 1866.640211 1764.129426 1747.429277 1847.673468 1795.895823 2362.780217 1679.302429 1774.680956 1.009337463 1.150240943 1.051817344 0.994054407 0.984644181 1.041129935 1.011954186 1.331383091 0.946255958 1 10.79334397 -4.260733958 24.52290774 1.018191399 1.331383218 0.766210007 0.051405159 14.93356664 518999.5825 0.006661045 0.053377286 5.49E-05 4.260733958 0.31319182 RHS(ph)PPIEK ddPTM_HeLa_CUDC101_4h_R1 1 RHSPPIEK 8 1 F5GZK9;Q8IZD4-2;Q8IZD4 F5GZK9 DCP1B mRNA-decapping enzyme 1B 1 0 RHS(1)PPIEK 80.737 0.022183 36855000 5924.9 2682.1 8606.5 8718.2 4890.9 4272.7 5825.1 2414.7 7623.7 11400 TRUE FALSE FALSE 5230.392204 2764.732322 9071.793423 9073.765879 4530.108051 4191.205366 6049.776058 2689.579687 7309.447859 11332.19229 0.461551663 0.243971533 0.800532959 0.800707016 0.399755664 0.369849475 0.533857519 0.23733975 0.645016222 1 13.46813937 -9.239405085 0.705289366 1.048146411 0.48465792 0.218252061 0.215065682 0.586648207 0.457397582 0.198680957 0.040324257 5.76E-10 9.239405085 -0.563488491 EEPEALY(ph)AAVNK ddPTM_HeLa_CUDC101_4h_R1 1 EEPEALYAAVNK 12 0 A0A087WVF7;Q9NZM3-2;Q9NZM3;Q9NZM3-4;Q9NZM3-3 A0A087WVF7 ITSN2 Intersectin-2 1 0 EEPEALY(1)AAVNK 141.91 0.0069637 12892000 3224.4 2434.5 2022.7 1802.5 2090.7 1647.8 1482.2 872.27 2456.4 2450 TRUE FALSE FALSE 2846.44072 2509.504059 2132.05328 1876.013741 1936.473226 1616.37096 1539.368951 971.565691 2355.146152 2435.427291 1.168764401 1.030416333 0.875432943 0.770301683 0.795126684 0.663690912 0.632073458 0.39893028 0.967036118 1 11.2499592 -5.572136443 0.626293744 1.082633334 0.443094969 0.852809677 0.0824727 0.30565622 0.186067721 0.019220113 0.104810977 2.68E-06 5.572136443 -0.639538365 down RPLS(ph)PETR ddPTM_HeLa_CUDC101_4h_R1 2 RPLSPETR 8 1 Q9P227 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 RPLS(0.969)PET(0.031)R;RPLS(1)PETR ; 82.494 0.02092 29212600 1780.37 1412.74 1740.83 1434.57 1442.06 1324.99 1467.43 1572.07 1611.09 2099.55 TRUE FALSE FALSE 1571.677727 1456.264845 1834.944536 1493.077965 1335.682107 1299.718023 1524.029267 1751.028094 1544.680188 2087.061783 0.753057595 0.697758378 0.879199912 0.715397109 0.639982064 0.622750143 0.730227193 0.838991978 0.740121927 1 11.02725759 -9.239342607 0.442148502 1.073561375 0.714192288 0 0.109910735 0.940527791 0.247422168 0.154268694 0.023849307 5.76E-10 9.239342607 -0.359369087 GLPSTAS(ph)GR ddPTM_HeLa_CUDC101_4h_R1 3 GLPSTASGR 9 0 H7BYT1;P48730-2;P48730 H7BYT1 CSNK1D Casein kinase I isoform delta 1 0 GLPSTAS(1)GR;GLPST(0.005)AS(0.994)GR;GLPST(0.003)AS(0.997)GR ;; 107.45 0.011486 121627000 7995.5 6690.7 7030.2 7028.9 7384 6826.4 7221.9 6257.9 6906.6 7511.2 TRUE FALSE FALSE 7058.27961 6896.832537 7410.273877 7315.568923 6839.297031 6696.197794 7500.451102 6970.274041 6621.907025 7466.523048 0.945323488 0.923700696 0.992466484 0.979782541 0.9159949 0.896829455 1.004544023 0.933536801 0.886879607 1 12.86622086 -9.239232487 0.769314286 1.003327309 0.94929266 0 0.04803902 0.88165234 0.850146152 0.029886832 0.006572739 5.76E-10 9.239232487 -0.054034649 DSALAEAPEGLS(ph)PAPPAR ddPTM_HeLa_CUDC101_4h_R1 4 DSALAEAPEGLSPAPPAR 18 0 C9JPC9;Q9H9J4-2;Q9H9J4 C9JPC9 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 0 DSALAEAPEGLS(1)PAPPAR;DSALAEAPEGLS(1)PAPPAR;DSALAEAPEGLS(1)PAPPAR;DSALAEAPEGLS(1)PAPPAR ;;; 224.99 3.52E-33 226641000 13953.5 12075.5 12263.1 11548.9 13470.7 13095.1 12123.4 10829.3 13912 14994.4 TRUE FALSE FALSE 12317.89188 12447.53184 12926.08028 12019.91406 12476.9933 12845.33279 12591.0036 12062.06374 13338.54147 14905.21264 0.826415039 0.835112664 0.867218777 0.806423521 0.837089252 0.861801377 0.844738274 0.809251369 0.894891055 1 13.86352934 -9.23895666 0.706435386 1.015005083 0.835143779 0.52391254 0.037025362 0.184650098 0.144573965 0.019975343 0.004062538 5.77E-10 9.23895666 -0.179861304 SKDYDVYS(ph)DNDICSQESEDNFAK ddPTM_HeLa_CUDC101_4h_R1 4 SKDYDVYSDNDICSQESEDNFAK 23 1 A0A0C4DGZ1;Q8N5P1 A0A0C4DGZ1 ZC3H8 Zinc finger CCCH domain-containing protein 8 1 0 S(0.001)KDY(0.006)DVY(0.114)S(0.83)DNDICS(0.049)QES(0.001)EDNFAK;S(0.002)KDY(0.007)DVY(0.087)S(0.823)DNDICS(0.076)QES(0.003)EDNFAK;SKDYDVY(0.009)S(0.991)DNDICSQESEDNFAK;SKDYDVY(0.001)S(0.999)DNDICSQESEDNFAK ;;; 136.16 1.06E-07 240316000 17224.1 14374.8 15276 13394.2 15778.5 14329.3 15227 11395.7 16897.7 10951.4 TRUE FALSE FALSE 15205.11711 14817.67055 16101.86677 13940.47337 14614.55149 14055.99248 15814.31049 12692.94042 16201.16965 10886.26059 1.39672544 1.361135023 1.479099884 1.280556649 1.342476728 1.291168107 1.452685278 1.165959636 1.488221738 1 13.41022086 -9.238876274 0.877504592 0.990624336 1.352448459 0 0.172293246 0.256728495 0.340995276 0.061714871 0.015416913 5.77E-10 9.238876274 0.361824123 GGQNSTAASTK(ac)YDVFR ddPTM_HeLa_CUDC101_4h_R1 2 GGQNSTAASTKYDVFR 16 1 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-6 SYNRG Synergin gamma 0 1 ; GGQNSTAASTK(1)YDVFR;GGQNSTAASTK(1)YDVFR 284.91 3.66E-91 14153100 976.51 1498.97 1534.35 1258.15 1788.04 1717.12 2015.14 2005.64 644.5 613.74 FALSE TRUE FALSE 862.0449781 1545.151489 1617.301602 1309.462795 1656.139851 1684.368797 2092.864625 2233.953951 617.9334372 610.0894472 1.412981297 2.532663851 2.650925384 2.146345591 2.714585311 2.760855486 3.430422595 3.661682661 1.012857115 1 9.252876966 -5.571635607 0.247276746 0.733118467 4.718317022 0.890568144 0.292912339 1.196093455 0.10808832 0.307105628 1.474220263 2.68E-06 5.571635607 3.985198555 up GACST(ph)PDMPQFEPVK ddPTM_HeLa_CUDC101_4h_R1 3 GACSTPDMPQFEPVK 15 0 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 GACS(0.165)T(0.835)PDMPQFEPVK;GACS(0.023)T(0.977)PDMPQFEPVK;GACS(0.021)T(0.979)PDMPQFEPVK ;; 212.55 5.32E-23 51362000 9480.1 6335.1 5531.8 5767.5 5117.7 5376.3 4045.3 2398.55 6811.5 7175.5 TRUE FALSE FALSE 8368.857049 6530.276922 5830.865841 6002.723579 4740.177467 5273.756035 4201.328576 2671.591237 6530.727087 7132.819807 1.173288724 0.91552529 0.817469949 0.841563889 0.664558701 0.73936482 0.589013699 0.3745491 0.915588402 1 12.80025681 -5.568947879 0.546897992 1.083340777 0.398213471 0.773276758 0.101626732 0.421242925 0.185403912 0.024452936 0.144016322 2.70E-06 5.568947879 -0.685127305 down SAFMAPVPTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 6 SAFMAPVPTKK 11 1 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 0 1 ;;;;; SAFMAPVPTK(1)K;SAFMAPVPTK(1)K;SAFMAPVPTK(1)K;SAFMAPVPTK(1)K;SAFMAPVPTK(1)K;SAFMAPVPTK(1)K 127.42 0.00063024 7727600 1784.71 2440.41 3401.974 7453.697 13156.23 15874.02 17093.48 18706.27 923.31 2667.33 FALSE TRUE FALSE 1575.508999 2515.59614 3585.895005 7757.690981 12185.72112 15571.24952 17752.78125 20835.71616 885.250771 2651.464603 0.594203293 0.948757203 1.35242047 2.92581352 4.595845297 5.87269749 6.695462286 7.858191335 0.33387237 1 11.37257377 -5.568328718 0.901255458 0.765441881 7.670836345 0.989060707 0.27948967 0.045854418 0.066431868 0.048206424 0.198988944 2.70E-06 5.568328718 6.905394464 up EATDAIGHLDR ddPTM_HeLa_CUDC101_4h_R1 3 EATDAIGHLDR 11 0 Q12906-7;Q12906-4;Q12906-6;Q12906;Q12906-5;Q12906-2;Q12906-3 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 0 ;; ;; 110.98 0.0062066 43733000 24743.3 23205 21903.4 21277.1 21574.7 21415.2 19921.3 19541.3 23307.5 19931.1 FALSE FALSE TRUE 21842.92788 23919.91855 23087.56406 22144.87211 19983.17736 21006.74074 20689.67121 21765.8026 22346.75498 19812.54893 1.102479442 1.207311519 1.16530004 1.117719491 1.008612139 1.060274517 1.044271047 1.098586693 1.127909138 1 14.27412688 -3.79886038 14.23167526 1.070276782 21.7314251 0 0.066283442 917935.2926 353725.2872 0.01051812 624022814.6 0.000158906 3.79886038 20.66114832 EATDEELEK ddPTM_HeLa_CUDC101_4h_R1 2 EATDEELEK 9 0 A0A669KAX4;Q13620-1;Q13620;Q13620-3;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 0 0 ; ; 172.23 1.46E-06 14502000 5097.9 3795 4467.2 4143.8 4396.9 4190.6 4363.2 3634.3 4714.5 4463.5 FALSE FALSE TRUE 4500.33189 3911.919452 4708.710345 4312.802075 4072.549447 4110.671287 4531.490086 4048.014022 4520.166315 4436.950903 1.014284807 0.881668411 1.061249143 0.972019337 0.917871199 0.9264631 1.021307241 0.912341405 1.018755089 1 12.11535287 -6.773087923 0.652854303 1.006715241 0.951113681 0.139102562 0.052383097 0.985029095 0.865646974 0.012661383 0.02162123 1.69E-07 6.773087923 -0.05560156 EATDEELER ddPTM_HeLa_CUDC101_4h_R1 2 EATDEELER 9 0 A0A0A0MR50;Q13619-2;Q13619 A0A0A0MR50 CUL4A Cullin-4A 0 0 ; ; 155.07 0.0010214 19024300 2596.5 2581.3 2223.27 2661 2618 2555.4 2538 2413 2672.3 2797.2 FALSE FALSE TRUE 2292.142206 2660.826793 2343.466701 2769.527082 2424.875356 2506.660003 2635.89151 2687.686166 2562.146663 2780.56213 0.824344898 0.956938442 0.842803214 0.996031361 0.872080983 0.901493973 0.947970729 0.966598134 0.921449169 1 11.44116086 -4.60167881 4.653230244 0.914598123 0.962660986 0.090233556 0.055747908 0.467693206 18.06865772 0.009792078 0.040847365 2.50E-05 4.60167881 0.048062863 VNGDDHHEEDMDMS(ph)D ddPTM_HeLa_CUDC101_4h_R1 4 VNGDDHHEEDMDMSD 15 0 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D ;;; 143.64 0.00035753 194700500 17277.7 16038.1 14412.6 13949.5 15749.3 14474.3 14627.1 13803.2 16556 14325.2 TRUE FALSE FALSE 15252.4342 16532.21485 15191.78875 14518.4209 14587.50552 14198.22684 15191.27215 15374.50049 15873.55467 14239.99307 1.071098428 1.160970709 1.066839617 1.019552526 1.024403976 0.997066977 1.066803338 1.079670504 1.11471646 1 13.79766082 -9.23825399 1.12277228 1.001984769 1.059834628 0 0.054762171 0.620028181 1.467589892 0.025834487 0.008159032 5.78E-10 9.23825399 0.057849859 LLNLQDS(ph)DSEECTSR ddPTM_HeLa_CUDC101_4h_R1 4 LLNLQDSDSEECTSR 15 0 Q52LR7 Q52LR7 EPC2 Enhancer of polycomb homolog 2 1 0 LLNLQDS(0.951)DS(0.028)EECT(0.021)SR;LLNLQDS(0.946)DS(0.054)EECTSR;LLNLQDS(0.904)DS(0.096)EECTSR;LLNLQDS(0.975)DS(0.025)EECTSR ;;; 229.69 2.14E-33 33230900 7703.45 6853.16 6193.27 5978.9 7790.2 7088.74 6224.95 6808.33 7382.3 4603.93 TRUE FALSE FALSE 6800.463269 7064.297737 6528.09691 6222.745385 7215.532466 6953.534095 6465.048407 7583.362767 7077.998469 4576.54562 1.485938049 1.543587309 1.426424525 1.359703563 1.576632916 1.519384853 1.412648085 1.657005829 1.546580993 1 12.16004335 -9.237960401 0.564104516 0.91478504 1.505833628 0 0.188664725 0.359695073 0.164087874 0.112808222 0.019283679 5.78E-10 9.237960401 0.591048587 EATNPPVIQEEK(ac)PK ddPTM_HeLa_CUDC101_4h_R1 2 EATNPPVIQEEKPK 14 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 1 ; EATNPPVIQEEK(1)PK;EATNPPVIQEEK(1)PK 217.12 1.99E-20 6860600 1660.44 504.58 547.68 535.65 1367.07 1216.39 1311.55 1180.76 1300.21 1084.35 FALSE TRUE FALSE 1465.80574 520.1255117 577.2892374 557.4961223 1266.22397 1193.189387 1362.136923 1315.172946 1246.614793 1077.900238 1.359871432 0.482535854 0.535568337 0.517205677 1.174713508 1.106957161 1.263694797 1.220124924 1.156521494 1 10.07400794 -7.307697114 24.9991248 1.169939257 0.903866065 0.151164108 0.2952801 679.2468712 367084.6711 0.057891613 0.066198235 4.92E-08 7.307697114 -0.266073193 RLS(ph)ESSALK ddPTM_HeLa_CUDC101_4h_R1 2 RLSESSALK 9 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 RLS(0.999)ES(0.001)SALK;RLS(0.995)ES(0.004)S(0.001)ALK ; 163.46 8.55E-05 80220000 7568.7 6486.7 6193.3 6965.9 7070.2 7329.3 7674.1 6573 6831.3 9569.9 TRUE FALSE FALSE 6681.508459 6686.547538 6528.128532 7249.999511 6548.645432 7189.505814 7970.092608 7321.243751 6549.710923 9512.977809 0.7023572 0.702886906 0.68623397 0.762116727 0.688390698 0.755757656 0.837812593 0.76960589 0.688502702 1 13.2156813 -9.237734362 0.899566633 1.005181794 0.737077994 0 0.104891016 0.206973358 0.291978668 0.037211477 0.009538118 5.78E-10 9.237734362 -0.2681038 ST(ph)S(ph)PAGQHHS(ph)PISSR ddPTM_HeLa_CUDC101_4h_R1 2 STSPAGQHHSPISSR 15 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 0 S(0.5)T(0.598)S(0.901)PAGQHHS(0.98)PIS(0.011)S(0.009)R;S(0.489)T(0.613)S(0.898)PAGQHHS(0.913)PIS(0.049)S(0.038)R ; 113.78 0.0023995 45135000 5170.5 4631.3 4235.3 4565.5 4890 4888.9 4753.5 3966.1 5543.9 5815.4 TRUE FALSE FALSE 4564.421828 4773.984864 4464.273129 4751.700824 4529.274442 4795.652378 4936.844087 4417.584792 5315.378095 5780.809742 0.789581742 0.825833244 0.772257405 0.821978414 0.783501731 0.829581424 0.854005634 0.764180969 0.919486773 1 12.49705588 -9.237491707 0.760952125 1.013099362 0.805083945 0.732660753 0.036068803 0.191515328 0.179958161 0.024850519 0.005421935 5.79E-10 9.237491707 -0.208015417 EVPNS(ph)SPPR ddPTM_HeLa_CUDC101_4h_R1 3 EVPNSSPPR 9 0 O60732-2;O60732 O60732-2 MAGEC1 Melanoma-associated antigen C1 1 0 EVPNS(0.799)S(0.201)PPR;EVPNS(0.5)S(0.5)PPR;EVPNS(0.5)S(0.5)PPR ;; 98.458 0.019188 108269000 11116.3 9975.9 8802 9813.5 9919.6 10191 9927.9 8922 9053.7 8991.2 TRUE FALSE FALSE 9813.264165 10283.24565 9277.862745 10213.73695 9187.850871 9996.623654 10310.82243 9937.644416 8680.502654 8937.719943 1.097960579 1.150544627 1.038056999 1.14276762 1.027985989 1.118475821 1.153630064 1.111876908 0.971221151 1 13.12569112 -9.236812281 0.503371759 0.976800998 1.108819225 0.558756353 0.041926782 0.997857425 0.350192363 0.065229247 0.010509087 5.80E-10 9.236812281 0.132018227 S(ph)PILEEK ddPTM_HeLa_CUDC101_4h_R1 2 SPILEEK 7 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;A0A0A0MR81 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 S(1)PILEEK;S(1)PILEEK ; 112.11 0.013646 33980000 6029.4 5205.6 4930.4 5090.7 5210.6 6509.4 6191.2 4591.4 5680.7 6879.4 TRUE FALSE FALSE 5322.642872 5365.978366 5196.952338 5298.32075 4826.224419 6385.24404 6429.996658 5114.066417 5446.539142 6838.481023 0.77833701 0.784674016 0.759957119 0.774780354 0.705745092 0.933722565 0.940266798 0.747836603 0.796454523 1 12.73946019 -9.236743567 0.914349817 1.002940758 0.804988994 0 0.095015455 0.414247243 0.607904796 0.055309266 0.014422805 5.80E-10 9.236743567 -0.197951764 TDATDGKDYNASASTIS(ph)PPSSMEEDK ddPTM_HeLa_CUDC101_4h_R1 1 TDATDGKDYNASASTISPPSSMEEDK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TDATDGKDYNAS(0.01)AS(0.139)T(0.139)IS(0.624)PPS(0.044)S(0.044)MEEDK 66.137 0.00084772 12295000 526.99 403.04 504.13 591.72 326 760.78 392.61 364.51 611.19 682.23 TRUE FALSE FALSE 465.2170311 415.4571847 531.3847927 615.8528992 301.9516295 746.269389 407.7530992 406.004345 585.9964895 678.1720656 0.68598672 0.612613237 0.783554528 0.908107146 0.44524339 1.100413047 0.601253163 0.598674533 0.864082317 1 9.40550755 -9.236446826 0.886413406 1.006643671 0.720831165 0.173555526 0.178214952 0.641814422 0.874366042 0.122252507 0.030942613 5.80E-10 9.236446826 -0.285812506 EATTDFTVDSRPLTQVGGDHIK ddPTM_HeLa_CUDC101_4h_R1 1 EATTDFTVDSRPLTQVGGDHIK 22 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 0 58.082 0.0095471 9860100 2002 1999.2 2095 1657.7 2364.1 2472.9 2396 2026.2 2180 2247.9 FALSE FALSE TRUE 1767.328595 2060.792982 2208.262037 1725.308171 2189.705053 2425.733553 2488.414523 2256.854418 2090.139477 2234.529391 0.790917587 0.922249218 0.988244794 0.772112543 0.979940144 1.085567978 1.113619061 1.00999093 0.935382406 1 11.12575531 -5.496683619 5.521577579 0.898921792 1.069348 0.514025782 0.073307545 0.137605131 12.50888458 0.013177773 0.028880294 3.19E-06 5.496683619 0.170426209 GPSPAPASS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 GPSPAPASSPK 11 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 GPSPAPAS(0.33)S(0.67)PK;GPSPAPAS(0.02)S(0.98)PK ; 170.4 8.73E-07 73491000 12788.5 10960.2 11631 11082 10273.8 11198.5 10329.9 13014.1 13186.5 13295.1 TRUE FALSE FALSE 11289.45142 11297.87077 12259.80704 11533.97186 9515.922242 10984.90727 10728.3277 14495.57254 12642.94689 13216.02015 0.854224743 0.854861799 0.927647423 0.872726564 0.720029338 0.831181183 0.811766899 1.096818283 0.956637985 1 13.69000017 -9.236343998 0.720989331 1.011477899 0.862537913 0.167081941 0.092148851 0.980259501 0.807798646 0.088668329 0.018432683 5.80E-10 9.236343998 -0.148939986 CVACQNPDKPS(ph)PSTSVPAPASFK ddPTM_HeLa_CUDC101_4h_R1 2 CVACQNPDKPSPSTSVPAPASFK 23 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 CVACQNPDKPS(0.841)PS(0.134)T(0.022)S(0.004)VPAPASFK;CVACQNPDKPS(0.707)PS(0.134)T(0.134)S(0.026)VPAPASFK ; 104.87 1.36E-05 48912000 12357.8 10045.4 9654.6 10219.2 10943.9 10052.5 9332.3 8573.7 10981.7 3043.9 TRUE FALSE FALSE 10909.23742 10354.88687 10176.55688 10635.98315 10136.5903 9860.765311 9692.249937 9549.695352 10529.02968 3025.794747 3.60541224 3.422203993 3.363267415 3.515103976 3.350058793 3.258900928 3.203207999 3.156094894 3.479756744 1 11.56309841 -9.235452669 0.806072484 0.881846307 3.375427195 0 0.770845768 0.100709091 0.109027741 0.160771729 0.037156906 5.81E-10 9.235452669 2.493580888 EAVAPVQEESDLEK ddPTM_HeLa_CUDC101_4h_R1 2 EAVAPVQEESDLEK 14 0 E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E9PGG1;E7ETL8;E7ESD3;E7EMU4;Q13409;Q13409-7;Q13409-5;E7ET01;E7ERR6;E7EUM4;E7ERH4;E7EU01 E7EQL5 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 0 0 ; ; 155.88 0.00040887 12643600 4867.6 4907.4 4516.1 4797.7 5172.5 4694.9 4718 5540.7 4912.6 5250.9 FALSE FALSE TRUE 4297.027307 5058.591177 4760.254026 4993.370943 4790.93498 4605.352605 4899.97484 6171.430892 4710.100549 5219.667413 0.82323776 0.969140517 0.911984165 0.956645424 0.917862117 0.882307672 0.93875231 1.182341786 0.902375607 1 12.34974217 -4.264393405 4.596451506 0.919144251 1.198279234 0.740900001 0.046203984 0.099326466 5.506674592 0.00897887 0.088785845 5.44E-05 4.264393405 0.279134983 RIDFIPVS(ph)PAPSPTR ddPTM_HeLa_CUDC101_4h_R1 1 RIDFIPVSPAPSPTR 15 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 RIDFIPVS(0.893)PAPS(0.016)PT(0.091)R 75.017 0.015942 11215000 950.83 801.06 830.05 885.32 624.12 696.78 825.85 799.97 1073 1140.8 TRUE FALSE FALSE 839.3751488 825.7397091 874.9250138 921.4271763 578.079911 683.4900824 857.7033111 891.0353512 1028.770486 1134.014471 0.74018028 0.728156236 0.771528967 0.812535642 0.50976414 0.602717249 0.756342475 0.785735433 0.907193437 1 10.14722333 -9.234820622 0.401996283 1.091046947 0.686262252 0.531696558 0.089638262 1.187912287 0.256349299 0.206348692 0.031923197 5.82E-10 9.234820622 -0.404784696 EAVCIVLSDDTCSDEK ddPTM_HeLa_CUDC101_4h_R1 2 EAVCIVLSDDTCSDEK 16 0 P55072;C9JUP7;C9IZA5 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 226.59 4.39E-32 71955000 6093.2 5136.4 5102.5 4841.8 4196.7 4584.1 4407.8 4257.6 4887.2 1088.28 FALSE FALSE TRUE 5378.964333 5294.646396 5378.356584 5039.269532 3887.117802 4496.66593 4577.810323 4742.267974 4685.747547 1081.806862 4.972203931 4.894262166 4.971642141 4.658197048 3.5931717 4.156625445 4.231633652 4.38365492 4.331408601 1 10.07922724 -9.249586742 0.896688848 0.918735568 4.489463568 0.047912745 1.090075966 0.156950737 0.218654776 0.377031106 0.094818269 5.63E-10 9.249586742 3.570728 EAVELPLTHFELYK ddPTM_HeLa_CUDC101_4h_R1 1 EAVELPLTHFELYK 14 0 P43686;P43686-2 P43686 PSMC4 26S protease regulatory subunit 6B 0 0 149.82 0.00022352 8635800 2002.9 1957.6 1833.5 2301.6 2149.1 2429.1 1998.5 1520.2 2159.5 2657.7 FALSE FALSE TRUE 1768.123098 2017.911336 1932.624556 2395.469196 1990.565175 2382.768965 2075.582814 1693.253423 2070.484496 2641.891882 0.669263988 0.763812989 0.731530525 0.906724917 0.753462013 0.901917668 0.785642603 0.640924572 0.783712804 1 11.36735571 -9.47493701 1.208493406 1.000277263 0.765700212 0.046411455 0.103534955 0.303902975 0.792574096 0.059111564 0.014443541 3.35E-10 9.47493701 -0.234577051 EAVLLLK ddPTM_HeLa_CUDC101_4h_R1 1 EAVLLLK 7 0 P36578;H3BTP7;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 0 112.75 0.0022895 0 561.64 614.41 378.21 536.96 289.05 442.63 569.58 400.5 383.12 446.65 FALSE FALSE TRUE 495.8054106 633.3392438 398.6571766 558.8595497 267.7273574 434.1875702 591.5488914 446.0913011 367.3276314 443.9933059 1.116695689 1.426461245 0.897890061 1.258711657 0.602998635 0.977914677 1.33233741 1.004725286 0.827326959 1 8.794394115 EAVTHIGR ddPTM_HeLa_CUDC101_4h_R1 1 EAVTHIGR 8 0 D6RBW1;P06730;P06730-3;P06730-2 D6RBW1 EIF4E Eukaryotic translation initiation factor 4E 0 0 120.87 0.0067473 9897500 6389.1 5191 6477.8 6461.1 5921.9 5769.4 5461.9 5170.2 6103.7 5606.7 FALSE FALSE TRUE 5640.179383 5350.928557 6828.009462 6724.611585 5485.053235 5659.358307 5672.567313 5758.754669 5852.102903 5573.351099 1.011990683 0.960091776 1.22511741 1.206565218 0.984157132 1.015431866 1.017801895 1.033266085 1.050015116 1 12.44432933 ASAPS(ph)PNAQVACDHCLK ddPTM_HeLa_CUDC101_4h_R1 2 ASAPSPNAQVACDHCLK 17 0 A0A3B3IUA7;Q14258 A0A3B3IUA7 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 1 0 ASAPS(1)PNAQVACDHCLK;AS(0.002)APS(0.998)PNAQVACDHCLK ; 258.9 4.88E-70 109757000 7523 5721.2 5960.6 6967.3 6421.2 5811.8 5525.5 5247.7 5316.8 1096.04 TRUE FALSE FALSE 6641.165344 5897.463391 6282.848066 7251.456609 5947.520869 5700.949598 5738.620386 5845.076956 5097.639254 1089.520705 6.095492552 5.412897031 5.76661649 6.655639102 5.458841525 5.232529836 5.267105396 5.364814939 4.678790617 1 10.0894779 -9.234819271 0.778333755 0.719647131 5.693275439 0.325563588 1.195311587 0.141666704 0.140854254 0.443867381 0.099291706 5.82E-10 9.234819271 4.973628308 ELEQHIQTS(ph)DPENFQSEER ddPTM_HeLa_CUDC101_4h_R1 2 ELEQHIQTSDPENFQSEER 19 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 ELEQHIQT(0.252)S(0.748)DPENFQSEER;ELEQHIQT(0.263)S(0.736)DPENFQSEER ; 97.662 0.0012201 47219000 5018.6 4309.1 3960.7 4342.8 4862.1 4396.5 4620.2 4193.1 4974.5 4799 TRUE FALSE FALSE 4430.327316 4441.858263 4174.827422 4519.918155 4503.43257 4312.644088 4798.402662 4670.425555 4769.449004 4770.455335 0.928701142 0.9311183 0.875142335 0.947481496 0.944025728 0.90403196 1.005858419 0.979031398 0.999789049 1 12.21991126 -9.234492841 0.982077598 0.999778482 0.93828622 0.330025061 0.034229226 0.550029548 0.957069078 0.023373769 0.006550029 5.83E-10 9.234492841 -0.061492262 S(ph)ASSDTSEELNSQDSPPK ddPTM_HeLa_CUDC101_4h_R1 1 SASSDTSEELNSQDSPPK 18 0 O14745;J3QRP6;O14745-2 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 0 S(0.559)AS(0.366)S(0.074)DT(0.001)SEELNSQDSPPK 204.05 1.33E-17 11679000 3802.4 3320 3144.9 3124 3236 2972.9 2755.3 3231 2924.9 5782.4 TRUE FALSE FALSE 3356.688436 3422.285265 3314.922807 3251.410223 2997.286727 2916.196886 2861.572844 3598.80398 2804.334384 5748.006028 0.583974411 0.595386513 0.576708304 0.565658805 0.521448083 0.50734061 0.497837481 0.626096069 0.487879513 1 12.48884586 -9.233965602 0.474318761 1.106821821 0.534142107 0 0.164028271 0.231412217 0.071201592 0.063214391 0.009998976 5.83E-10 9.233965602 -0.572679714 EAYPEEAYIADLDAK ddPTM_HeLa_CUDC101_4h_R1 2 EAYPEEAYIADLDAK 15 0 P53396;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 ; ; 259.85 4.20E-69 34312000 5358.2 4451.6 3842 3894.9 4838.5 4483.2 4132.1 3999.7 4384.9 4434.4 FALSE FALSE TRUE 4730.119919 4588.74852 4049.710141 4053.750857 4481.573495 4397.69043 4291.476481 4455.009681 4204.152566 4408.023992 1.073070366 1.040998989 0.918713271 0.919629944 1.016685368 0.997655738 0.973560146 1.010659127 0.953749928 1 12.10591636 -6.799425946 24.9984789 1.035956614 0.973556419 0.144008329 0.04380298 139.3067333 91675.55228 0.006802409 0.008940231 1.59E-07 6.799425946 -0.062400195 EAYPGDVFYLHSR ddPTM_HeLa_CUDC101_4h_R1 2 EAYPGDVFYLHSR 13 0 P25705;P25705-2;P25705-3 P25705 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 0 ; ; 182.37 7.00E-11 89671000 9916.6 8619.5 6572.6 8050 7587.1 8163.2 7402.4 6626 6633.5 7017.6 FALSE FALSE TRUE 8754.191181 8885.056578 6927.934637 8378.313795 7027.414749 8007.500561 7687.913048 7380.277057 6360.064322 6975.859003 1.254926623 1.273686377 0.993129969 1.201044028 1.007390595 1.147887387 1.10207403 1.057973943 0.911724896 1 12.76815517 -5.767202805 24.97751584 1.130397422 1.085424239 0 0.116496931 470.1279833 2037452.267 0.017413601 0.032178313 1.71E-06 5.767202805 -0.044973183 (ac)ACGLVAS(ph)NLNLKPGECLR ddPTM_HeLa_CUDC101_4h_R1 2 ACGLVASNLNLKPGECLR 18 1 P09382;F8WEI7 P09382 LGALS1 Galectin-1 1 0 ACGLVAS(1)NLNLKPGECLR;ACGLVAS(1)NLNLKPGECLR ; 65.105 0.00044418 13356100 1234.3 1003.73 1017.63 786.91 1428.68 1249.1 876.4 829.39 1059.17 442.81 TRUE FALSE FALSE 1089.617225 1034.653732 1072.646156 819.0035911 1323.289123 1225.275499 910.2030416 923.8044051 1015.510564 440.1761464 2.475411796 2.350544753 2.436856619 1.860626928 3.00627177 2.783602675 2.067815462 2.098715282 2.307054965 1 8.781937156 -9.233831159 0.697612569 0.868057605 2.410057421 0.031211786 0.513774034 0.371996675 0.283238372 0.342348911 0.069329779 5.84E-10 9.233831159 1.541999816 WSS(ph)SPENACGLPSPISTNR ddPTM_HeLa_CUDC101_4h_R1 2 WSSSPENACGLPSPISTNR 19 0 A0A0A0MRP0;Q8IWC1-2;Q8IWC1-3;Q8IWC1-4;Q8IWC1 A0A0A0MRP0 MAP7D3 MAP7 domain-containing protein 3 1 0 WS(0.019)S(0.491)S(0.491)PENACGLPSPISTNR;WSS(0.5)S(0.5)PENACGLPSPISTNR ; 138.97 5.10E-05 11460800 2914.25 2366.23 2338.4 2684.51 2878.7 2347.25 2137.21 2262.73 2783.47 1703.48 TRUE FALSE FALSE 2572.646033 2439.130742 2464.820977 2793.995921 2666.344036 2302.480117 2219.642906 2520.310037 2668.734188 1693.347625 1.51926633 1.440419383 1.455590654 1.649983665 1.57459933 1.359720876 1.310801676 1.488359507 1.576010825 1 10.72566246 -9.232996463 0.785881925 0.973156707 1.477023207 0 0.199686541 0.283075118 0.288413063 0.090203324 0.020414635 5.85E-10 9.232996463 0.503866501 SSS(ph)ESYTQSFQSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSESYTQSFQSR 13 0 Q9BTU6;E9PAM4 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 1 0 S(0.003)S(0.006)S(0.86)ES(0.131)YTQSFQSR 238.88 1.49E-43 14782000 1862.7 1587 1455.1 1678 1703.1 1814.1 1509.7 1406.2 1158.7 1328.9 TRUE FALSE FALSE 1644.35713 1635.893589 1533.767107 1746.436093 1577.465706 1779.499065 1567.929635 1566.276124 1110.937896 1320.995644 1.244786186 1.238379246 1.161069012 1.322060448 1.19414906 1.347089276 1.186930208 1.185678493 0.840985283 1 10.36740999 -9.232554493 0.645715515 0.971491582 1.240572689 0.70538332 0.077345224 0.405778682 0.256280966 0.062521449 0.011875815 5.85E-10 9.232554493 0.269081107 SYQNS(ph)PSSDDGIRPLPEYSTEK ddPTM_HeLa_CUDC101_4h_R1 2 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 SYQNS(0.333)PS(0.333)S(0.333)DDGIRPLPEYSTEK;S(0.002)Y(0.001)QNS(0.459)PS(0.08)S(0.459)DDGIRPLPEYSTEK ; 118.44 3.81E-07 51279000 3309 2953.7 2527.1 2891 3600.6 2991.3 2797.5 2801.1 2970.1 3579.3 TRUE FALSE FALSE 2921.124036 3044.699996 2663.72267 3008.907476 3334.990911 2934.245936 2905.400512 3119.965902 2847.671221 3558.010164 0.820999351 0.855731112 0.74865516 0.845671411 0.937319107 0.824687339 0.816580161 0.876885045 0.800354999 1 11.79685492 -9.232225536 0.854653773 1.005170213 0.839349386 0 0.076212194 0.33680679 0.420918477 0.036623631 0.008996759 5.86E-10 9.232225536 -0.165820827 TDSLFVLPSRDDAT(ph)PVRDEPMDAESITFK ddPTM_HeLa_CUDC101_4h_R1 1 TDSLFVLPSRDDATPVRDEPMDAESITFK 29 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 T(0.101)DS(0.101)LFVLPS(0.087)RDDAT(0.68)PVRDEPMDAES(0.027)IT(0.004)FK 45.042 0.037185 3955200 1074.2 1030.5 774.46 877.34 1104.1 1308.6 979.47 756.3 962.56 1423.2 TRUE FALSE FALSE 948.2839044 1062.248484 816.3296502 913.1217174 1022.652743 1283.640635 1017.248486 842.3941349 922.8828694 1414.734743 0.670290957 0.750846396 0.577019582 0.645436695 0.722858294 0.907336617 0.719038315 0.595443166 0.652336329 1 10.46631586 -9.231283696 0.820981479 1.012902489 0.70077708 0 0.137867892 0.380902403 0.432000812 0.076625456 0.018126735 5.87E-10 9.231283696 -0.31212541 VVLGDGVQLPPGDYSTT(ph)PGGT(ph)LFSTTPGGTR ddPTM_HeLa_CUDC101_4h_R1 1 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 VVLGDGVQLPPGDY(0.04)S(0.018)T(0.102)T(0.835)PGGT(0.373)LFS(0.237)T(0.197)T(0.175)PGGT(0.023)R 75.759 1.02E-05 3734900 2710.6 2340.7 2140.1 2438.8 2584.6 2370.4 2643.4 2130.9 2612.1 2737.5 TRUE FALSE FALSE 2392.867577 2412.814193 2255.800279 2538.264805 2393.939207 2325.188569 2745.356823 2373.473043 2504.428132 2721.217228 0.879337214 0.886667249 0.828967367 0.932768167 0.87973102 0.854466356 1.008870881 0.87221006 0.920333778 1 11.41003641 -9.231216809 0.917939398 1.001366903 0.89361969 0.147731756 0.052096944 0.444810012 0.6603047 0.032304264 0.008518234 5.87E-10 9.231216809 -0.107747213 QGPPCS(ph)DS(ph)EEEVER ddPTM_HeLa_CUDC101_4h_R1 1 QGPPCSDSEEEVER 14 0 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 2 0 QGPPCS(1)DS(1)EEEVER 115.58 0.021395 17577000 2555.2 2117.7 1970.4 2001.8 2137.4 2171.6 1910.4 1804.9 1876.8 373.7 TRUE FALSE FALSE 2255.683329 2182.943827 2076.925784 2083.442057 1979.72826 2130.180348 1984.084768 2010.36252 1799.43751 371.4772158 6.07219833 5.876386853 5.590991038 5.608532551 5.329339664 5.734349935 5.341067187 5.411805718 4.844005051 1 8.537129917 -9.230470008 0.80163082 0.76669824 5.645518224 0.272233723 1.192189213 0.094478872 0.101150779 0.293907077 0.068022873 5.88E-10 9.230470008 4.878819984 ECPSDECGAGVFMASHFDR ddPTM_HeLa_CUDC101_4h_R1 4 ECPSDECGAGVFMASHFDR 19 0 A0A2R8Y422;P62979 A0A2R8Y422 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 0 0 ;;; ;;; 225.54 1.85E-33 153904000 15895.6 15615.7 15275.3 15525.7 17268.1 16516.9 15136.4 15520.4 16428.3 2315.72 FALSE FALSE TRUE 14032.34186 16096.80121 16101.12892 16158.90515 15994.26667 16201.86765 15720.21602 17287.1796 15751.11852 2301.945994 6.095860588 6.992692811 6.994572836 7.019671701 6.948150263 7.038335257 6.829098535 7.509811109 6.842523047 1 11.16863827 -8.9432381 0.504089095 0.182435238 7.21538044 0 1.813508782 0.096160047 0.040032205 0.324596888 0.074623095 1.14E-09 8.9432381 7.032945202 S(ph)PSVSPSKQPVSTSSK ddPTM_HeLa_CUDC101_4h_R1 1 SPSVSPSKQPVSTSSK 16 1 H0Y7Q2;Q96JG6-3;Q96JG6 H0Y7Q2 CCDC132 Coiled-coil domain-containing protein 132 1 0 S(0.947)PS(0.05)VS(0.001)PSKQPVSTSSK 61.087 0.031576 21742000 3012.7 2594.9 2491.7 2755.8 2736.3 2946.6 2587.3 2552.2 2519 1695.3 TRUE FALSE FALSE 2659.555873 2674.845793 2626.408839 2868.193436 2534.4486 2890.398514 2687.093028 2842.732132 2415.165754 1685.21628 1.57816887 1.587241842 1.558499565 1.701973491 1.50393076 1.715149888 1.594509298 1.686864864 1.433148838 1 10.71871804 -9.22996389 0.486361857 0.858997714 1.642540903 0.442651593 0.147364963 0.250283162 0.081623491 0.094984213 0.015226535 5.89E-10 9.22996389 0.783543189 ATS(ph)PLVSLYPALECR ddPTM_HeLa_CUDC101_4h_R1 3 ATSPLVSLYPALECR 15 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 AT(0.065)S(0.935)PLVSLYPALECR;AT(0.007)S(0.993)PLVSLYPALECR;AT(0.08)S(0.92)PLVSLYPALECR ;; 283.66 3.12E-103 583660000 6312.1 5847.9 4803.2 4798.5 5735.7 4881.6 5115.6 4565.5 5782.1 2941.63 TRUE FALSE FALSE 5572.205207 6028.066868 5062.875521 4994.203571 5312.588838 4788.491613 5312.910406 5085.218066 5543.759391 2924.133054 1.905592223 2.06148857 1.73141079 1.70792624 1.816808175 1.637576514 1.816918146 1.739051531 1.895864274 1 11.51379324 -9.229885199 0.902912207 0.986170139 1.803471216 0 0.294796073 0.169439047 0.241919178 0.092720588 0.024102876 5.89E-10 9.229885199 0.817301077 GILAADES(ph)TGSIAK ddPTM_HeLa_CUDC101_4h_R1 3 GILAADESTGSIAK 14 0 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 GILAADES(0.821)T(0.179)GSIAK;GILAADES(0.925)T(0.075)GSIAK;GILAADES(0.985)T(0.015)GSIAK ;; 215.09 3.89E-24 84087000 9363.9 7637.8 8641.1 7738.1 9386.7 8395.4 7456.5 7461.4 8707.3 10312.3 TRUE FALSE FALSE 8266.277837 7873.111565 9108.264004 8053.693165 8694.261842 8235.271733 7744.099703 8310.775616 8348.381409 10250.96198 0.806390449 0.768036364 0.888527732 0.785652428 0.848141068 0.803365747 0.755451022 0.810731289 0.814399802 1 13.32347168 -9.229323744 0.613976453 1.02661386 0.804590888 0 0.068053328 0.35965181 0.201585429 0.044432616 0.008147553 5.90E-10 9.229323744 -0.222022972 EDAGDNDDTEGAIGVR ddPTM_HeLa_CUDC101_4h_R1 1 EDAGDNDDTEGAIGVR 16 0 Q9H0S4-2;Q9H0S4 Q9H0S4-2 DDX47 Probable ATP-dependent RNA helicase DDX47 0 0 160.46 0.00033428 8930000 725.69 928.88 817.84 717.54 982.01 1005 1139.1 780.25 773.16 571.87 FALSE FALSE TRUE 640.6257183 957.4976918 862.0549042 746.8043827 909.5690787 985.8312994 1183.035469 869.0705061 741.2900176 568.4684918 1.126932675 1.684346108 1.516451513 1.313712885 1.600034288 1.73418811 2.081092419 1.528792745 1.304012497 1 9.150936578 -6.754370134 0.439493534 0.978140059 1.846744222 0.488710293 0.21435574 0.42564523 0.186248674 0.076852634 0.143355315 1.76E-07 6.754370134 0.868604163 EDAQVAAEILEIADTPSGDKTSLETR ddPTM_HeLa_CUDC101_4h_R1 1 EDAQVAAEILEIADTPSGDKTSLETR 26 1 P08133-2;P08133;E7EMC6 P08133-2 ANXA6 Annexin A6;Annexin 0 0 93.712 7.56E-06 2961200 749.73 650.14 798.8 805.54 827.18 609.31 605.07 614.49 610.28 692.7 FALSE FALSE TRUE 661.8477859 670.1700428 841.9855442 838.393403 766.1605794 597.6884269 628.4077526 684.4410577 585.1240001 688.5797896 0.961178059 0.973264178 1.222785735 1.217568996 1.112667829 0.868001699 0.912614285 0.993989467 0.849754827 1 9.427480027 -5.249848935 24.64734692 1.024878543 0.92364307 0.177668049 0.114096056 1003.428742 2133808.102 0.016588696 0.041873935 5.63E-06 5.249848935 -0.101235473 LNLAQFLNEDLS(ph) ddPTM_HeLa_CUDC101_4h_R1 2 LNLAQFLNEDLS 12 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 LNLAQFLNEDLS(1);LNLAQFLNEDLS(1) ; 99.653 0.011913 75977000 1256.12 988.24 1078.17 999.91 1149.68 1555.72 1196.06 940.05 1391.06 1452.72 TRUE FALSE FALSE 1108.879518 1018.686503 1136.459131 1040.690652 1064.870397 1526.047233 1242.192435 1047.061492 1333.719918 1444.079157 0.76788001 0.705422898 0.786978419 0.720660392 0.73740445 1.056761484 0.860196914 0.72507209 0.923578124 1 10.49593411 -9.228495041 0.977125474 0.999326263 0.797923052 0.297010998 0.100169335 0.489689775 0.843717593 0.067870348 0.019075689 5.91E-10 9.228495041 -0.201403211 EDCEQWWEDCR ddPTM_HeLa_CUDC101_4h_R1 2 EDCEQWWEDCR 11 0 P15328 P15328 FOLR1 Folate receptor alpha 0 0 ; ; 146.71 0.0052673 8079600 2641.9 2594.4 2190.38 2467.7 2327.6 1936.14 2141.1 1686.67 1936.27 750.59 FALSE FALSE TRUE 2332.220487 2674.330389 2308.798568 2568.343472 2155.897585 1899.211355 2223.682944 1878.673695 1856.456131 746.1254573 3.125775249 3.584290501 3.094383854 3.442240775 2.889457214 2.545431652 2.980307028 2.517905905 2.488128656 1 9.543274423 -9.124602646 0.836362864 0.969282257 3.034111367 0.362877856 0.54904902 0.198167262 0.245621797 0.256238709 0.070834633 7.51E-10 9.124602646 2.064829109 S(ph)VPSETVVEDSR ddPTM_HeLa_CUDC101_4h_R1 2 SVPSETVVEDSR 12 0 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 S(0.994)VPS(0.006)ETVVEDSR;S(1)VPSETVVEDSR ; 229.75 3.23E-33 16272700 743.91 630.71 580.56 817.36 593.79 640.4 746.57 462.36 684.99 869.97 TRUE FALSE FALSE 656.7099975 650.1414275 611.9468297 850.6954737 549.9872947 628.185437 775.365455 514.9931935 656.7544223 864.7953797 0.759381945 0.751786426 0.707620374 0.983695674 0.635973905 0.726397772 0.896588341 0.595508724 0.759433315 1 9.756215005 -9.228480341 0.618149273 1.032302969 0.757916274 0 0.130703852 0.801678693 0.456909533 0.122848351 0.022667813 5.91E-10 9.228480341 -0.274386695 EDEEEDDDVVAPKPPIEPEEEK ddPTM_HeLa_CUDC101_4h_R1 4 EDEEEDDDVVAPKPPIEPEEEK 22 1 E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E7ESD3;E7EMU4;Q13409;Q13409-7;Q13409-5 E7EQL5 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 0 0 ;;; ;;; 160.27 2.02E-07 110797000 17957.3 14086.5 12607 12783.2 12827.6 13184.7 11878 10789.4 15818.6 15993.5 FALSE FALSE TRUE 15852.37252 14520.48837 13288.57255 13304.55415 11881.3335 12933.22381 12336.13844 12017.62168 15166.55061 15898.36995 0.997106783 0.913331896 0.83584497 0.836850205 0.747330295 0.813493701 0.775937312 0.755902757 0.953968907 1 13.95659123 -6.790481063 1.221936178 1.001470404 0.779171695 0.912334866 0.027114406 0.058011957 0.173247557 0.003934232 0.005840709 1.62E-07 6.790481063 -0.222298709 TPSPKEEDEEPES(ph)PPEK ddPTM_HeLa_CUDC101_4h_R1 4 TPSPKEEDEEPESPPEK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 TPSPKEEDEEPES(1)PPEK;TPSPKEEDEEPES(1)PPEK;TPSPKEEDEEPES(1)PPEK;TPSPKEEDEEPES(1)PPEK ;;; 113.33 0.00043552 586361000 18795.7 16672.5 16520.4 15026.3 17412.8 17837.7 16414.1 16720.6 18394.5 21644.8 TRUE FALSE FALSE 16592.49654 17186.15996 17413.5428 15639.13746 16128.29244 17497.47559 17047.19734 18624.00552 17636.27092 21516.05577 0.771168132 0.79875978 0.809327833 0.726858939 0.749593355 0.813228771 0.792301225 0.865586412 0.819679551 1 14.39312601 -9.228403541 0.758856901 1.013983452 0.786975781 0.163533525 0.065689303 0.244690112 0.229413438 0.034513438 0.007603551 5.91E-10 9.228403541 -0.227007671 EDEEESLNEVGYDDIGGCR ddPTM_HeLa_CUDC101_4h_R1 3 EDEEESLNEVGYDDIGGCR 19 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ;; ;; 438.97 0 90016800 3477.56 2511.79 2611.21 2699.67 2288.94 2443.58 2395.18 1948.78 2846.79 1959.03 FALSE FALSE TRUE 3069.925688 2589.175273 2752.379911 2809.774212 2120.089456 2396.972783 2487.562895 2170.621238 2729.444111 1947.377602 1.576440894 1.329570223 1.413377615 1.442850225 1.088689453 1.230872112 1.27739114 1.114638083 1.401599827 1 10.92731694 -3.695967255 0.797958013 1.294902123 0.854004606 0.117665054 0.160958637 15.5882817 3.830150929 0.036770647 7.545440604 0.000201388 3.695967255 -0.440897517 YPSSIS(ph)SSPQKDLTQAK ddPTM_HeLa_CUDC101_4h_R1 1 YPSSISSSPQKDLTQAK 17 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 Y(0.002)PS(0.003)S(0.013)IS(0.479)S(0.479)S(0.025)PQKDLTQAK 88.108 0.004476 345900000 3416.9 3105.4 2694.6 3112.4 3254.7 2752.5 3254.6 2908.7 3481 3867.1 TRUE FALSE FALSE 3016.376162 3201.073693 2840.278227 3239.337125 3014.607265 2700.000648 3380.131012 3239.814651 3337.511707 3844.098317 0.784677163 0.832724199 0.738867217 0.842678011 0.784217004 0.702375544 0.879303996 0.842802234 0.868217051 1 11.90842952 -9.228207196 0.738744323 1.014893236 0.797904687 0.33916627 0.063910278 0.354899128 0.311659458 0.047232759 0.010151189 5.91E-10 9.228207196 -0.216988549 RVPLSPLS(ph)LLAGPADAR ddPTM_HeLa_CUDC101_4h_R1 1 RVPLSPLSLLAGPADAR 17 1 Q5T4K5;Q53ET0;H0YDQ8 Q5T4K5 CRTC2 CREB-regulated transcription coactivator 2 1 0 RVPLS(0.462)PLS(0.538)LLAGPADAR 59.614 0.027564 9992600 1724.4 1495.2 1372.6 1455.9 2051.4 1302.5 1500.1 1564 1274.6 1860.1 TRUE FALSE FALSE 1522.268446 1541.26534 1446.806908 1515.277895 1900.072309 1277.656983 1557.959359 1742.039438 1222.060449 1849.036042 0.823276784 0.833550728 0.782465498 0.819496138 1.027601553 0.69098544 0.842579227 0.942133846 0.660917592 1 10.85255763 -9.22667024 0.880866403 1.003604891 0.842097662 0 0.134986895 0.570864552 0.769123054 0.061074358 0.015565656 5.93E-10 9.22667024 -0.161507229 IS(ph)LRT(ph)T(ph)ALENTSIK ddPTM_HeLa_CUDC101_4h_R1 1 ISLRTTALENTSIK 14 1 O60307 O60307 MAST3 Microtubule-associated serine/threonine-protein kinase 3 3 0 IS(1)LRT(1)T(1)ALENTSIK 120.63 0.0034179 14035000 2309.2 1861.9 1813.3 1806.6 2668.3 2065.2 1681.9 1884.5 2148.4 276.59 TRUE FALSE FALSE 2038.519077 1919.262932 1911.332483 1880.280957 2471.464825 2025.809751 1746.771446 2099.023863 2059.842043 274.9448304 7.414284072 6.980538348 6.951694565 6.838757267 8.988948152 7.368059069 6.353170722 7.634345624 7.491837689 1 8.102998351 -9.226647509 0.615795466 0.144286143 7.43541034 0 2.115798952 0.20997192 0.118706173 0.852866517 0.157293329 5.93E-10 9.226647509 7.291124198 LTESCCS(ph)SDAFER ddPTM_HeLa_CUDC101_4h_R1 2 LTESCCSSDAFER 13 0 F8WF45;A0A2R8Y7M0;P82094;P82094-2 F8WF45 TMF1 TATA element modulatory factor 1 0 LTES(0.002)CCS(0.938)S(0.06)DAFER;LTES(0.002)CCS(0.936)S(0.062)DAFER ; 109.95 0.004658 23172000 4342.4 3975.4 3492.5 3419.9 3589.2 3899.4 3662.5 3030.7 3400.9 2665.7 TRUE FALSE FALSE 3833.390455 4097.877362 3681.315114 3559.378304 3324.431867 3825.025442 3803.763852 3375.702637 3260.713463 2649.844298 1.446647434 1.546459679 1.389257141 1.343240547 1.254576305 1.44349064 1.435466927 1.273924902 1.230530211 1 11.37169188 -9.226579394 0.92426356 0.995893076 1.394713367 0.472194478 0.106618879 0.231448319 0.349860327 0.062260425 0.016628363 5.93E-10 9.226579394 0.398820291 EDEISLEDLIER ddPTM_HeLa_CUDC101_4h_R1 2 EDEISLEDLIER 12 0 Q8WU90;Q8WU90-2 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 0 0 ; ; 174.77 2.98E-06 4466200 2459.1 2175.9 1907.76 1941.14 2035.85 1936.25 2005.84 1611.74 2142.31 2742.3 FALSE FALSE TRUE 2170.848026 2242.9369 2010.899276 2020.30808 1885.669401 1899.319257 2083.205921 1795.213967 2054.003075 2725.988678 0.796352547 0.822797585 0.737677046 0.741128566 0.691737797 0.696745101 0.764201971 0.658555181 0.753489217 1 11.41256385 -9.30905044 0.239255275 1.167279334 0.66927415 0.163164087 0.08300835 1.047616409 0.08506888 0.158848663 0.030383892 4.91E-10 9.30905044 -0.498005185 QPLLLS(ph)EDEEDTK ddPTM_HeLa_CUDC101_4h_R1 4 QPLLLSEDEEDTK 13 0 Q99613-2;Q99613;B5ME19;H3BPE4 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 1 0 QPLLLS(1)EDEEDTK;QPLLLS(0.989)EDEEDT(0.011)K;QPLLLS(1)EDEEDTK;QPLLLS(1)EDEEDTK ;;; 205.28 1.07E-17 172139000 8595.3 7935.6 6958.3 7725.3 11135.3 10474.3 9287.1 7214.5 10168.2 19207.3 TRUE FALSE FALSE 7587.771964 8180.08643 7334.486746 8040.371126 10313.8711 10274.52018 9645.306558 8035.769518 9749.062492 19093.05413 0.397410069 0.42843258 0.384144239 0.421114981 0.540189696 0.538128689 0.505173583 0.420873972 0.510607807 1 14.22076027 -9.226519589 0.839634924 1.019629256 0.454448937 0.146834926 0.158006167 0.145043337 0.174084128 0.053256909 0.012958205 5.94E-10 9.226519589 -0.56518032 EDEKGDDVDDPENQNSALADTDASGGLTK ddPTM_HeLa_CUDC101_4h_R1 1 EDEKGDDVDDPENQNSALADTDASGGLTK 29 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 0 0 152.13 3.61E-16 7766400 1852.5 1843.1 1260.7 1487.2 1478.7 1446.9 1365.1 1793.3 1589.1 1633.7 FALSE FALSE TRUE 1635.352758 1899.883726 1328.857255 1547.854444 1369.619247 1419.302793 1417.752364 1997.442023 1523.596625 1623.98268 1.007001355 1.169891619 0.818270584 0.953122508 0.8433706 0.873964243 0.873009535 1.229965103 0.938185268 1 10.66532053 -6.741058555 24.99984054 1.015892529 0.92357162 0.126863474 0.12139769 376.7770164 462166.9938 0.017650133 0.024944145 1.82E-07 6.741058555 -0.092320909 DLLVSSGSNNSLPCGS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 DLLVSSGSNNSLPCGSPK 18 0 Q5THK1-3;Q5THK1-2;Q5THK1-4;Q5THK1 Q5THK1-3 PRR14L Protein PRR14L 1 0 DLLVSSGSNNSLPCGS(1)PK 140.89 8.57E-05 19440000 4226.4 3632.2 3225.8 3395.7 3992.1 3557.6 3130.7 2921.2 4132.8 1448 TRUE FALSE FALSE 3730.987799 3744.103777 3400.196506 3534.191323 3697.610736 3489.744707 3251.452148 3253.7376 3962.444235 1439.387232 2.592066761 2.601178956 2.362252791 2.455344362 2.568878378 2.424465516 2.258914124 2.26050192 2.752868823 1 10.49123905 -9.225774479 0.824450603 0.940504568 2.449892954 0 0.550986055 0.126434055 0.145231572 0.122996754 0.029432271 5.95E-10 9.225774479 1.509388386 EDENSWFNLFVIHQNR ddPTM_HeLa_CUDC101_4h_R1 2 EDENSWFNLFVIHQNR 16 0 F8W7U8;P49959;P49959-3;P49959-2;F5GXT0 F8W7U8 MRE11A Double-strand break repair protein MRE11A 0 0 ; ; 153.41 0.00012157 11122400 3221.6 3598.6 3209.8 3403.4 3750.5 3584.7 3451.2 3372.3 3535.5 4151.2 FALSE FALSE TRUE 2843.968932 3709.468601 3383.331497 3542.205363 3473.833087 3516.32782 3584.31394 3756.189001 3389.765194 4126.508478 0.689194981 0.898936382 0.819901744 0.858402541 0.841833503 0.852131491 0.868606949 0.910258399 0.821460858 1 12.01070589 -9.666493119 1.531500812 0.99961182 0.820662819 0 0.080955701 0.295026699 1.249760525 0.052829133 0.011955807 2.16E-10 9.666493119 -0.178949001 EDEVEEWQHR ddPTM_HeLa_CUDC101_4h_R1 2 EDEVEEWQHR 10 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ; ; 201.84 3.72E-17 20758000 20521.7 19041 16155.1 17628.7 15773.7 17725 14819.6 16123.2 16291.9 21176.7 FALSE FALSE TRUE 18116.17743 19627.63064 17028.49357 18347.67458 14610.10558 17386.92516 15391.19694 17958.59992 15620.34099 21050.74005 0.860595751 0.932396229 0.808926125 0.871592853 0.694042373 0.825953155 0.731147546 0.853110146 0.742032867 1 14.36158333 -8.56801878 0.224233973 1.084537056 0.747209821 0 0.098042347 1.928112875 0.218859297 0.213994303 0.081233985 2.70E-09 8.56801878 -0.337327235 S(ph)DENIPGGVMR ddPTM_HeLa_CUDC101_4h_R1 2 SDENIPGGVMR 11 0 O75976;O75976-2 O75976 CPD Carboxypeptidase D 1 0 S(1)DENIPGGVMR;S(1)DENIPGGVMR ; 117.52 0.0048334 20095900 1927.75 1896.17 1474.51 1621.6 1638.41 1937.23 1282.73 1281.76 1998.54 1236.99 TRUE FALSE FALSE 1701.782067 1954.58875 1554.226471 1687.735857 1517.547758 1900.280565 1332.205326 1427.670377 1916.159335 1229.632328 1.383976354 1.5895717 1.263976585 1.372553257 1.234147577 1.545405502 1.083417616 1.161054686 1.558318931 1 10.26401129 -9.225071169 1.003182031 1.003406566 1.333231598 0 0.226770235 0.416439646 0.763933131 0.095187588 0.027552393 5.96E-10 9.225071169 0.329825031 EDFSGYDFENR ddPTM_HeLa_CUDC101_4h_R1 2 EDFSGYDFENR 11 0 G3V1P2;Q8N584-2;Q8N584 G3V1P2 TTC39C Tetratricopeptide repeat protein 39C 0 0 ; ; 172.98 3.64E-06 9903300 2296 1727.44 1662.83 1813.73 2671 2084.5 2436.3 2724.3 2085.5 2233.1 FALSE FALSE TRUE 2026.866361 1780.660379 1752.72762 1887.701749 2473.965651 2044.741636 2530.268907 3034.4233 1999.534807 2219.817422 0.913077959 0.802165242 0.789581883 0.850386041 1.1144906 0.921130547 1.139854513 1.366969765 0.900765436 1 11.11622531 -4.130330137 1.151813918 0.931008741 1.68421356 0.712965762 0.091658537 0.965093364 0.854959136 0.015011211 0.936234528 7.41E-05 4.130330137 0.753204819 QNGSNDSDRYS(ph)DNEEDSKIELK ddPTM_HeLa_CUDC101_4h_R1 3 QNGSNDSDRYSDNEEDSKIELK 22 2 P42167;G5E972;H0YJH7;P42167-2;P42167-3 P42167 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 QNGS(0.006)NDS(0.061)DRY(0.417)S(0.517)DNEEDSKIELK;QNGS(0.016)NDS(0.179)DRY(0.369)S(0.437)DNEEDSKIELK;QNGS(0.043)NDS(0.295)DRY(0.243)S(0.419)DNEEDSKIELK ;; 98.924 0.00015096 75706000 5784.2 4907.44 4863.6 5724 5073 5358.3 4943.2 4573.7 5284.3 6340.3 TRUE FALSE FALSE 5106.184844 5058.63241 5126.540928 5957.449461 4698.774897 5256.099355 5133.86088 5094.35152 5066.478917 6302.587614 0.810172767 0.80262786 0.813402564 0.945238659 0.745531072 0.833958951 0.814563985 0.808295232 0.803872826 1 12.62172855 -9.224847872 0.739488211 1.013151778 0.820916633 0 0.076572379 0.368291288 0.324766484 0.043404867 0.009379477 5.96E-10 9.224847872 -0.192235145 EDGNEEDK(ac)ENQGDETQGQQPPQRR ddPTM_HeLa_CUDC101_4h_R1 2 EDGNEEDKENQGDETQGQQPPQRR 24 2 H0Y449;P67809 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 0 1 ; EDGNEEDK(1)ENQGDETQGQQPPQRR;EDGNEEDK(1)ENQGDETQGQQPPQRR 113.36 4.49E-05 1197050 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 EDGNEEDKENQGDETQGQQPPQR ddPTM_HeLa_CUDC101_4h_R1 2 EDGNEEDKENQGDETQGQQPPQR 23 1 H0Y449;P67809 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 0 0 ; ; 130.73 1.61E-07 18219500 3436.95 3182.21 3598.36 3179.14 2603.31 2720.7 3038.41 3421.49 3525.28 3980.41 FALSE FALSE TRUE 3034.075931 3280.250118 3792.898226 3308.799071 2411.269008 2668.80718 3155.602491 3810.978591 3379.966466 3956.734344 0.766813151 0.829029657 0.958593096 0.836244939 0.609408871 0.674497439 0.797527005 0.963162613 0.854231336 1 11.95009449 -5.991316257 24.88542014 0.886725498 0.753216615 0.225838869 0.104727181 234.941509 673276.8731 0.018441985 0.033393089 1.02E-06 5.991316257 -0.133508883 EDGNEEDKENQGDETQGQQPPQRR ddPTM_HeLa_CUDC101_4h_R1 2 EDGNEEDKENQGDETQGQQPPQRR 24 2 H0Y449;P67809 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 0 0 ; ; 66.702 0.00097504 19290800 2225.87 2164.2 2422.2 2492.7 2938.2 2620 2533.9 2566.8 2341.21 2083 FALSE FALSE TRUE 1964.956893 2230.876437 2553.151459 2594.36308 2721.45484 2570.027865 2631.633372 2858.994137 2244.704333 2070.610223 0.948974786 1.077400474 1.233043008 1.252946137 1.314325028 1.241193459 1.270945802 1.380749551 1.084078649 1 11.01584029 -6.816976131 2.051083185 0.975518582 1.288759439 0.85601386 0.051470803 0.054500121 0.468934301 0.006769207 0.009485799 1.52E-07 6.816976131 0.313240858 YGPADVEDTTGSGATDS(ph)KDDDDIDLFGSDDEEESEEAKR ddPTM_HeLa_CUDC101_4h_R1 2 YGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKR 39 2 P24534;C9JZW3 P24534 EEF1B2 Elongation factor 1-beta 1 0 Y(0.001)GPADVEDT(0.11)T(0.11)GS(0.104)GAT(0.11)DS(0.445)KDDDDIDLFGS(0.117)DDEEES(0.003)EEAKR;YGPADVEDT(0.023)T(0.023)GS(0.084)GAT(0.089)DS(0.39)KDDDDIDLFGS(0.39)DDEEES(0.001)EEAKR ; 52.155 0.002694 66753000 2158.8 2067.92 1667.77 1728.13 1736.08 1808.89 1650.18 1702.13 1738.18 1193.04 TRUE FALSE FALSE 1905.748737 2131.630164 1757.934691 1798.610611 1608.012837 1774.388437 1713.827995 1895.893599 1666.531485 1185.943745 1.606946994 1.797412544 1.482308666 1.516607022 1.355893013 1.496182635 1.445117446 1.598637041 1.40523654 1 10.21181986 -9.224783726 0.945981102 0.997797293 1.533966025 0.296771914 0.164380618 0.229726787 0.367177614 0.083707314 0.022917296 5.96E-10 9.224783726 0.536168732 EDGSGDRGDGPFR ddPTM_HeLa_CUDC101_4h_R1 1 EDGSGDRGDGPFR 13 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 0 84.605 0.030842 6351100 1819.1 1704.2 1865.7 1762.8 1833.6 1400.6 1370.6 1694.9 1582.3 1378.3 FALSE FALSE TRUE 1605.867856 1756.704382 1966.565385 1834.694603 1698.338981 1373.885889 1423.464501 1887.840565 1517.076924 1370.10181 1.172079216 1.282170689 1.43534252 1.339093628 1.239571372 1.002761896 1.038947975 1.377883418 1.107273133 1 10.42006739 -8.414714059 0.942235842 1.022428825 1.233133445 0.224614766 0.133226561 0.485322257 0.892327989 0.050358529 0.029916744 3.85E-09 8.414714059 0.21070462 EDGTFYEFGEDIPEAPER ddPTM_HeLa_CUDC101_4h_R1 2 EDGTFYEFGEDIPEAPER 18 0 O43776 O43776 NARS "Asparagine--tRNA ligase, cytoplasmic" 0 0 ; ; 244.23 2.68E-55 40012000 2842.5 2618.6 2036.07 2448.6 2572.91 2534.7 2284.2 2021.38 2568.1 2960.3 FALSE FALSE TRUE 2509.306459 2699.275962 2146.146103 2548.464492 2383.111555 2486.354821 2372.302359 2251.485729 2462.241831 2942.692004 0.852724803 0.917281169 0.729313873 0.866031677 0.809840633 0.844925265 0.806167399 0.7651109 0.836731071 1 11.52292084 -10.41045338 0.214940725 1.210167518 0.780839104 0.089982948 0.068976327 4.95214681 0.205401767 0.581083043 0.048497434 3.89E-11 10.41045338 -0.429328415 VFDVNRPCSPDS(ph)TTGSFADSFSSQK ddPTM_HeLa_CUDC101_4h_R1 1 VFDVNRPCSPDSTTGSFADSFSSQK 25 1 Q9NRE2;Q9NRE2-2 Q9NRE2 TSHZ2 Teashirt homolog 2 1 0 VFDVNRPCS(0.185)PDS(0.239)T(0.239)T(0.239)GS(0.092)FADS(0.002)FS(0.001)S(0.001)QK 45.305 0.033032 36543000 2839.7 2421.1 2512.3 2498.8 2840.7 2107.1 2211.9 1756.3 2871.3 1719.6 TRUE FALSE FALSE 2506.834671 2495.691221 2648.122537 2600.711865 2631.14722 2066.910578 2297.213724 1956.230093 2752.943799 1709.371743 1.466523991 1.460004959 1.549178842 1.521443113 1.539248108 1.209163885 1.343893588 1.144414666 1.610500355 1 10.73925046 -9.224567466 0.923962365 0.996013819 1.412083066 0 0.228046237 0.349631393 0.528495541 0.098030622 0.02624284 5.96E-10 9.224567466 0.416069246 ARQPLSEASNQQPLS(ph)GGEEK ddPTM_HeLa_CUDC101_4h_R1 3 ARQPLSEASNQQPLSGGEEK 20 1 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 ARQPLSEASNQQPLS(1)GGEEK;ARQPLSEAS(0.001)NQQPLS(0.999)GGEEK;ARQPLSEAS(0.001)NQQPLS(0.999)GGEEK ;; 103.71 0.00023463 73686000 14150.4 12832 12031.3 12453.6 12825.9 11391.5 11047.5 8390.4 13422.9 8376 TRUE FALSE FALSE 12491.71156 13227.33871 12681.74847 12961.51164 11879.75891 11174.22612 11473.60578 9345.529221 12869.60238 8326.179179 1.500293387 1.588644494 1.52311741 1.556717836 1.426795971 1.34205929 1.378015717 1.122427108 1.545679249 1 13.02343889 -9.224126222 0.958542605 0.999804877 1.438470456 0 0.208895347 0.304887389 0.502848322 0.091280115 0.025331152 5.97E-10 9.224126222 0.438665579 IPSIVS(ph)SPLNSPLDR ddPTM_HeLa_CUDC101_4h_R1 2 IPSIVSSPLNSPLDR 15 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 IPS(0.004)IVS(0.493)S(0.493)PLNS(0.01)PLDR;IPSIVS(0.5)S(0.5)PLNS(0.001)PLDR ; 85.473 0.01514 68540000 3777 3118.6 3196.1 3523.7 3615.8 3364.1 3320.7 3114.86 3579.6 3874.3 TRUE FALSE FALSE 3334.265786 3214.68037 3368.890834 3667.411717 3349.069638 3299.935397 3448.780511 3469.443072 3432.047373 3851.255491 0.865760735 0.834709714 0.874751322 0.952263937 0.869604638 0.856846658 0.895495123 0.900860273 0.891150271 1 11.91111312 -9.223993265 0.914834876 1.001496882 0.880864436 0.079265611 0.044333563 0.279071684 0.412072053 0.022599456 0.005996537 5.97E-10 9.223993265 -0.120632446 GASAATGIPLES(ph)DEDSNDNDNDIENENCMHTN ddPTM_HeLa_CUDC101_4h_R1 1 GASAATGIPLESDEDSNDNDNDIENENCMHTN 32 0 Q9Y4E8;Q9Y4E8-2;Q9Y4E8-3 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 0 GAS(0.001)AAT(0.065)GIPLES(0.733)DEDS(0.201)NDNDNDIENENCMHTN 138.42 1.77E-17 11338000 5869.3 5048.9 4845.4 4379.6 5461.4 5423.4 4928.3 4591.4 5478.9 3673.7 TRUE FALSE FALSE 5181.309551 5204.450625 5107.356981 4558.219018 5058.523403 5319.957681 5118.386182 5114.066417 5253.057423 3651.848669 1.418818254 1.425155064 1.398567532 1.248194937 1.385195242 1.456784813 1.401587701 1.400404803 1.438465254 1 11.83441127 -9.223969398 0.744638915 0.972024621 1.394205557 0 0.144865727 0.210896309 0.189230933 0.054756077 0.011922845 5.97E-10 9.223969398 0.422180935 INHTVILDDPFDDPPDLLIPDRS(ph)PEPTR ddPTM_HeLa_CUDC101_4h_R1 10 INHTVILDDPFDDPPDLLIPDRSPEPTR 28 1 Q8WUA2 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 1 0 INHTVILDDPFDDPPDLLIPDRS(0.753)PEPT(0.247)R;INHTVILDDPFDDPPDLLIPDRS(0.972)PEPT(0.028)R;INHTVILDDPFDDPPDLLIPDRS(0.922)PEPT(0.078)R;INHTVILDDPFDDPPDLLIPDRS(0.92)PEPT(0.08)R;INHTVILDDPFDDPPDLLIPDRS(0.872)PEPT(0.128)R;INHTVILDDPFDDPPDLLIPDRS(0.909)PEPT(0.091)R;INHTVILDDPFDDPPDLLIPDRS(0.722)PEPT(0.278)R;INHTVILDDPFDDPPDLLIPDRS(0.881)PEPT(0.119)R;INHTVILDDPFDDPPDLLIPDRS(0.916)PEPT(0.084)R;INHTVILDDPFDDPPDLLIPDRS(0.699)PEPT(0.301)R ;;;;;;;;; 144.11 3.23E-16 289576700 6650.68 5942.04 5772.3 5032.49 6154.11 5914.09 5697.55 5860.5 5932.71 6553.49 TRUE FALSE FALSE 5871.097372 6125.107209 6084.367998 5237.736694 5700.133566 5801.288587 5917.306412 6527.635631 5688.161183 6514.50955 0.90123398 0.940225379 0.933971767 0.804010901 0.874990438 0.890518088 0.90832723 1.002014899 0.873152636 1 12.66944085 -9.223790451 0.601731037 1.013497005 0.901248613 0 0.061955505 1.006574801 0.539383286 0.062095265 0.011299281 5.97E-10 9.223790451 -0.112248393 Y(ph)QFTPAFLR ddPTM_HeLa_CUDC101_4h_R1 1 YQFTPAFLR 9 0 K7EJU3;K7EN86;C9JSK0;Q13432-2;Q13432;A6NIH7 K7EJU3 UNC119;UNC119B Protein unc-119 homolog A;Protein unc-119 homolog B 1 0 Y(1)QFTPAFLR 123.21 0.00019726 0 1822.9 1619.1 1512.9 1694.4 1707.7 1798.1 1649 1425.3 1638.7 2350.9 TRUE FALSE FALSE 1609.222425 1668.982552 1594.69195 1763.504956 1581.726373 1763.804238 1712.602482 1587.550391 1571.152092 2336.916742 0.688609224 0.714181435 0.682391427 0.754628919 0.676843272 0.754756987 0.732847025 0.679335452 0.672318386 1 11.19039062 -9.223758957 0.764301552 1.018180373 0.709733279 0 0.104660259 0.141037692 0.134865668 0.027084766 0.006044866 5.97E-10 9.223758957 -0.308447094 AVS(ph)PPHLDGPPSPR ddPTM_HeLa_CUDC101_4h_R1 3 AVSPPHLDGPPSPR 14 0 P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-4;H3BVD2;P29590-11;P29590-12;P29590-13;H3BT57;H3BUJ5;H3BRN3;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 1 0 AVS(1)PPHLDGPPSPR;AVS(1)PPHLDGPPSPR;AVS(1)PPHLDGPPSPR ;; 78.249 0.018981 38858600 9287.3 7354.9 8240.6 7950.8 10278.3 8756.6 8010.5 7053.2 9575.1 9938.9 TRUE FALSE FALSE 8198.656773 7581.495751 8686.111762 8275.06799 9520.090286 8589.582444 8319.467668 7856.107778 9180.410325 9879.782981 0.829841788 0.767374725 0.879180421 0.837575887 0.963593057 0.869410033 0.84206988 0.795170075 0.929211739 1 13.27026364 -9.223640204 0.946371162 1.000577434 0.850170955 0.406923796 0.053802207 0.347492685 0.556174325 0.03550774 0.009739651 5.98E-10 9.223640204 -0.15040648 ESAS(ph)PTIPNLDLLEAHTK ddPTM_HeLa_CUDC101_4h_R1 2 ESASPTIPNLDLLEAHTK 18 0 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 ES(0.166)AS(0.818)PT(0.016)IPNLDLLEAHTK;ES(0.22)AS(0.754)PT(0.025)IPNLDLLEAHTK ; 220.74 3.91E-33 87486000 9459.3 7930 8652.4 7536.1 8841.5 8908.8 8240.8 8405.5 8960.3 10115.3 TRUE FALSE FALSE 8350.495193 8174.313901 9120.174916 7843.454732 8189.28016 8738.879483 8558.650416 9362.348144 8590.952641 10055.13375 0.830470823 0.812949296 0.907016768 0.780044794 0.814437716 0.869096295 0.85117221 0.931101304 0.854384721 1 13.29564465 -9.223336127 0.850225293 1.004880286 0.846728361 0.013908736 0.061499924 0.322115676 0.399056184 0.033231676 0.008219555 5.98E-10 9.223336127 -0.158151924 RADDFPVRDDPSDVT(ph)DEDEGPAEPPPPPK ddPTM_HeLa_CUDC101_4h_R1 1 RADDFPVRDDPSDVTDEDEGPAEPPPPPK 29 2 Q3YEC7-2;Q3YEC7 Q3YEC7-2 RABL6 Rab-like protein 6 1 0 RADDFPVRDDPS(0.112)DVT(0.888)DEDEGPAEPPPPPK 45.14 0.03687 6690600 1725.3 1285.7 1334.7 1295.1 1230.3 1320.5 1186.6 909.24 1631 2211.9 TRUE FALSE FALSE 1523.062949 1325.310893 1406.857919 1347.919776 1139.54322 1295.313663 1232.367559 1012.744206 1563.76949 2198.74352 0.692696959 0.602758294 0.639846306 0.613040932 0.518270189 0.589115397 0.560487182 0.460601337 0.711210505 1 11.10246361 -9.223205037 0.244177596 1.251361445 0.478948279 0.512118134 0.097653378 0.7043421 0.061845348 0.16901844 0.034295927 5.98E-10 9.223205037 -0.772413166 YHDANFIPTVY(ph)KCS(ph)KCGK ddPTM_HeLa_CUDC101_4h_R1 1 YHDANFIPTVYKCSKCGK 18 2 Q8NI51-11;Q8NI51-6;V9GY73;Q8NI51-5;Q8NI51-10;Q8NI51-4;Q8NI51-2;Q8NI51-8;Q8NI51;Q8NI51-3;Q8NI51-7 Q8NI51-11 CTCFL Transcriptional repressor CTCFL 2 0 YHDANFIPT(0.011)VY(0.99)KCS(0.999)KCGK 52.453 0.035226 6253400 1439.2 1089.1 1257.8 1280.2 1236.3 1060.6 1082.6 1087.8 1214.6 312.37 TRUE FALSE FALSE 1270.499158 1122.65388 1325.800473 1332.412089 1145.100612 1040.370822 1124.356245 1211.630755 1164.533674 310.5120093 4.091626473 3.615492626 4.269723659 4.291016287 3.687782043 3.350501078 3.62097507 3.902041527 3.750365972 1 8.278505257 -9.222787064 0.774808775 0.833471236 3.868158075 0.023265706 0.889168122 0.158013949 0.1562843 0.300362307 0.067994985 5.99E-10 9.222787064 3.034686839 KCS(ph)LPAEEDSVLEK ddPTM_HeLa_CUDC101_4h_R1 3 KCSLPAEEDSVLEK 14 1 E7EVA0;P27816;P27816-6 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KCS(1)LPAEEDSVLEK;KCS(1)LPAEEDSVLEK;KCS(1)LPAEEDSVLEK ;; 88.264 0.0088488 1022820000 16795.4 15142.5 14351.6 14235.2 15219.3 14169.3 14439.4 9555.2 15625.8 11108 TRUE FALSE FALSE 14826.66867 15609.02248 15127.49091 14815.77299 14096.60256 13899.04421 14996.33249 10642.92534 14981.69791 11041.92912 1.342760718 1.413613718 1.370004348 1.341773962 1.276643094 1.258751442 1.358126133 0.963864668 1.356800768 1 13.43070463 -9.222539532 0.964033581 1.00038174 1.300312404 0 0.160474885 0.374503876 0.626376329 0.076759633 0.021462644 5.99E-10 9.222539532 0.299930665 FICVTPTTCSNTIDLPMS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 FICVTPTTCSNTIDLPMSPR 20 0 G8JLH9;P40763-2;P40763 G8JLH9 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 1 0 FICVTPTTCSNT(0.071)IDLPMS(0.929)PR;FICVTPTTCSNTIDLPMS(1)PR ; 164.27 2.39E-06 34643000 2943.1 2409.4 2322.23 2641.3 2746.9 2685.8 2501.4 2247.3 2842.6 917.85 TRUE FALSE FALSE 2598.114279 2483.630758 2447.776778 2749.023631 2544.26666 2634.57284 2597.879836 2503.123548 2725.426825 912.3905874 2.847589964 2.722113525 2.68281678 3.012989907 2.788571797 2.887549342 2.847333008 2.743478048 2.987127292 1 9.833507753 -9.222229953 0.616932097 0.756669348 2.855916156 0 0.622735703 0.108043857 0.061505689 0.126378767 0.023476762 5.99E-10 9.222229953 2.099246808 EDLNCQEEEDPMNK ddPTM_HeLa_CUDC101_4h_R1 2 EDLNCQEEEDPMNK 14 0 O75821;K7EL20;K7ENA8 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G 0 0 ; ; 252.42 1.55E-55 17042200 6928.7 6045.8 6512.7 5778.4 5801.3 6081.6 5794.7 5123 7128.9 6594.4 FALSE FALSE TRUE 6116.528289 6232.063932 6864.796262 6014.068128 5373.349657 5965.603613 6018.20352 5706.181612 6835.043725 6555.176216 0.933083732 0.950708833 1.04723291 0.917453312 0.81971094 0.910059992 0.918084171 0.870484854 1.042694124 1 12.67841885 -6.007761009 24.77404923 0.971841903 0.882520513 0.583729157 0.044225127 202.3398918 645896.3723 0.006158842 0.010819891 9.82E-07 6.007761009 -0.08932139 AAATGNAS(ph)PGKLEHSK ddPTM_HeLa_CUDC101_4h_R1 1 AAATGNASPGKLEHSK 16 1 H0Y6H0;Q8NB78 H0Y6H0 KDM1B Lysine-specific histone demethylase 1B 1 0 AAAT(0.08)GNAS(0.916)PGKLEHS(0.005)K 68.639 0.019464 42279000 5973.9 4830.1 5029.4 5598.9 5775.4 5096.1 5154.5 5245.2 5527.3 5936 TRUE FALSE FALSE 5273.648498 4978.909656 5301.304577 5827.247343 5349.360248 4998.900383 5353.310792 5842.292366 5299.462355 5900.692408 0.893733842 0.843783968 0.898420763 0.987553145 0.906564837 0.84717183 0.907234342 0.990102849 0.898108559 1 12.52666854 -9.221441575 0.981636953 0.999474946 0.907103257 0 0.055432793 0.484421123 0.8456875 0.030747745 0.008759473 6.01E-10 9.221441575 -0.092371689 VENALNNLDDGAS(ph)PGDR ddPTM_HeLa_CUDC101_4h_R1 1 VENALNNLDDGASPGDR 17 0 C9IZC6;F5H3B6;Q13796 C9IZC6 SHROOM2 Protein Shroom2 1 0 VENALNNLDDGAS(1)PGDR 77.387 0.01604 1833300 571.97 487.19 549.03 399.86 560.01 565.63 505.07 452.85 693.65 643.78 TRUE FALSE FALSE 504.9245437 502.1997464 578.7122225 416.1680191 518.699178 554.8415502 524.5507191 504.4006135 665.0574534 639.9507679 0.789005294 0.784747471 0.904307412 0.650312555 0.810529816 0.867006617 0.819673552 0.78818659 1.039232214 1 9.321817111 -9.221060058 0.733995145 1.014802292 0.800559708 0.642689787 0.064235167 0.445160392 0.38621888 0.058198933 0.012553756 6.01E-10 9.221060058 -0.214242584 EDLRLPEGDLGK ddPTM_HeLa_CUDC101_4h_R1 1 EDLRLPEGDLGK 12 1 I3L397;I3L504;P63241;P63241-2 I3L397 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 0 0 98.407 0.016108 89288000 9257 7970 8641.3 7431.1 9335.8 9111 7942.8 6820.7 8776.5 9330.9 FALSE FALSE TRUE 8171.908493 8215.546253 9108.474817 7734.172378 8647.116634 8937.222855 8249.156457 7597.140918 8414.728955 9275.399392 0.881030363 0.88573504 0.982003516 0.833837127 0.932263536 0.963540488 0.889358626 0.819063481 0.907209339 1 13.17919369 -9.333652636 0.896706051 1.004383459 0.900178767 0.035468562 0.056053475 0.549025739 0.736964338 0.039707265 0.008879193 4.64E-10 9.333652636 -0.104204691 AK(ac)LCSSAETLESHPDIGK ddPTM_HeLa_CUDC101_4h_R1 1 AKLCSSAETLESHPDIGK 18 1 O96028-3;O96028;O96028-6;O96028-5 O96028-3;O96028-5 WHSC1 Histone-lysine N-methyltransferase NSD2 0 1 AK(1)LCSSAETLESHPDIGK 201.18 1.91E-18 1073300 419.15 602.23 465.93 727.35 771.88 1030.2 799.16 1039.1 285.51 209.77 FALSE TRUE FALSE 370.0178724 620.7839925 491.1195852 757.0144769 714.9399502 1010.550651 829.9838689 1157.386944 273.741157 208.5222787 1.774476448 2.977063153 2.355237954 3.630376963 3.428602232 4.846247881 3.980312675 5.550423441 1.312766955 1 7.704057721 -5.551371305 0.297750188 0.85395051 6.601995542 0.904097381 0.439563349 0.651606915 0.079591019 0.231046479 1.296245782 2.81E-06 5.551371305 5.748045032 EDLTEIR ddPTM_HeLa_CUDC101_4h_R1 1 EDLTEIR 7 0 F8VWS0;P05388-2;Q8NHW5;P05388;F8VPE8;G3V210;F8VW21;F8VU65;F8VWV4;F8VS58;F8VQY6;F8VRK7;F8VZS0 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 0 0 120.62 0.0010669 0 6810.7 5454 6191.8 5926 4839.3 5823.3 5392.2 4751.2 6408.5 7646.2 FALSE FALSE TRUE 6012.36007 5622.031275 6526.547437 6167.687894 4482.31448 5712.230255 5600.17896 5292.057403 6144.338918 7600.720062 0.791025064 0.739670877 0.858674887 0.811460999 0.589722348 0.75153804 0.736795845 0.696257376 0.808389056 1 12.89192038 -11.32677324 0.17526683 1.471531018 0.66362645 0.277383983 0.086690893 9.986260811 0.228985892 1.869005285 0.112095344 4.71E-12 11.32677324 -0.807904568 VQPQWS(ph)PPAGTQPCR ddPTM_HeLa_CUDC101_4h_R1 2 VQPQWSPPAGTQPCR 15 0 B4DKY1;P49589-2;P49589;P49589-3;C9JLN0;E9PRS8;E9PLP0 B4DKY1 CARS "Cysteine--tRNA ligase, cytoplasmic" 1 0 VQPQWS(0.945)PPAGT(0.055)QPCR;VQPQWS(0.926)PPAGT(0.074)QPCR ; 108.06 0.002921 15058600 4804.7 3863.2 4150 4227.8 4417.7 4341.6 3802.9 3687.3 4335.8 3214.8 TRUE FALSE FALSE 4241.500349 3982.220613 4374.361553 4400.227958 4091.815072 4258.791214 3949.579127 4107.047327 4157.076489 3195.678227 1.327261398 1.246126903 1.368836673 1.376930857 1.280421489 1.3326721 1.235912644 1.285188006 1.300843262 1 11.64190644 -9.221057443 0.720625198 0.975368935 1.310434278 0 0.102538455 0.226292252 0.187730307 0.045853399 0.009725755 6.01E-10 9.221057443 0.335065343 SELCS(ph)SPLGK ddPTM_HeLa_CUDC101_4h_R1 1 SELCSSPLGK 10 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 SELCS(0.5)S(0.5)PLGK 82.029 0.040508 23554000 8491.2 7468.5 7056.9 6533.9 7234.3 7652.2 6761.1 5791.1 7364.4 4158.3 TRUE FALSE FALSE 7495.874408 7698.595633 7438.41736 6800.380684 6700.640102 7506.247034 7021.877892 6450.335416 7060.836315 4133.566247 1.813415816 1.86245851 1.799515701 1.645160686 1.62103126 1.815925181 1.698745701 1.560477087 1.708170595 1 12.01317129 -9.220169407 0.868676214 0.98147333 1.732544416 0.016624199 0.234417299 0.16349583 0.21358806 0.080707856 0.020468771 6.02E-10 9.220169407 0.751071086 EDLYLK(ac)PIQR ddPTM_HeLa_CUDC101_4h_R1 2 EDLYLKPIQR 10 1 P13639 P13639 EEF2 Elongation factor 2 0 1 ; EDLYLK(1)PIQR;EDLYLK(1)PIQR 138.66 0.0010222 13476100 3001.2 1513.45 1163.58 1155.79 2461.9 2206.8 2262.8 1724.56 2485.5 2281 FALSE TRUE FALSE 2649.403886 1560.077601 1226.486654 1202.928112 2280.290542 2164.708967 2350.076954 1920.876939 2383.046638 2267.432511 1.168459865 0.688037061 0.540914293 0.530524329 1.005670745 0.954696096 1.036448469 0.847159477 1.050989005 1 11.14684389 -7.264726428 24.99285662 1.079550494 0.803023281 0.348348388 0.17080209 261.4176228 1987667.327 0.032903184 0.038459339 5.44E-08 7.264726428 -0.276527212 S(ph)SSPSASLTENELLWEPTPVK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPSASLTENELLWEPTPVK 21 0 O96028-3 O96028-3 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 S(0.328)S(0.328)S(0.328)PS(0.014)AS(0.001)LTENELLWEPTPVK 127.3 3.65E-07 2336500 1834.6 1584.7 1551.9 1538 1879.2 2055.1 1560.9 1402.3 1853.5 2316.4 TRUE FALSE FALSE 1619.550969 1633.522729 1635.800408 1600.726288 1740.57516 2015.902392 1621.104436 1561.932164 1777.097945 2302.62195 0.703350791 0.709418552 0.71040772 0.695175466 0.755910088 0.875481271 0.704025442 0.678327662 0.771771478 1 11.16906185 -9.22007951 0.83647409 1.009601386 0.730184699 0.186132112 0.08715054 0.25349665 0.302337832 0.045843558 0.011209756 6.02E-10 9.22007951 -0.279416687 EDMAALEKDYEEVGADSADGEDEGEEY ddPTM_HeLa_CUDC101_4h_R1 7 EDMAALEKDYEEVGADSADGEDEGEEY 27 1 Q9BQE3;F5H5D3 Q9BQE3 TUBA1C Tubulin alpha-1C chain 0 0 ;;;;;; ;;;;;; 161.8 1.18E-11 314156700 60385 58278.2 56627.5 55396.4 74914.3 63088.9 63903.6 66986.4 56768.4 62244.4 FALSE FALSE TRUE 53306.76184 60073.68227 59688.95394 57655.70464 69388.02134 61885.58435 66368.38326 74611.86101 54428.38252 61874.16754 0.861535015 0.970900857 0.964682941 0.931821904 1.121437655 1.000184517 1.072634767 1.205864482 0.879662462 1 15.91704959 -3.817754054 0.518949372 0.936503913 1.491040103 0.665609972 0.058628025 3.119193349 0.409369233 0.013468141 1.160748333 0.000152141 3.817754054 0.55453619 EDMAALEKDYEEVGVDSVEGEGEEEGEEY ddPTM_HeLa_CUDC101_4h_R1 10 EDMAALEKDYEEVGVDSVEGEGEEEGEEY 29 1 P68363;P68363-2;Q71U36-2;Q71U36 P68363 TUBA1B;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1A chain 0 0 ;;;;;;;;; ;;;;;;;;; 140.87 4.90E-16 310108000 93822.72 90711.24 87620.07 84682.13 118992.79 99457.73 99773.15 102421.78 91966.98 97562.67 FALSE FALSE TRUE 82824.96299 93505.94579 92357.07602 88135.83329 110214.9289 97560.73951 103621.4338 114081.0614 88176.06216 96982.3629 0.854020881 0.964154131 0.952307958 0.908782078 1.136443016 1.00596373 1.068456477 1.1763073 0.909196884 1 16.56543478 -5.766918239 24.99978298 0.932595211 1.088280847 0.682106138 0.055184983 74.75698597 341114.3275 0.009887656 0.01830381 1.71E-06 5.766918239 0.155685636 HFEASCGQLS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 1 HFEASCGQLSPAR 13 0 A0A1B0GV70;Q96N21-2;Q96N21 A0A1B0GV70 ENTHD2 AP-4 complex accessory subunit tepsin 1 0 HFEASCGQLS(1)PAR 139.64 2.52E-05 0 694.69 607.84 508.8 573.31 711.39 677.84 591.3 454.08 583.07 376.95 TRUE FALSE FALSE 613.2594913 626.5668299 536.307267 596.6920599 658.912177 664.9113314 614.1066391 505.7706317 559.0356078 374.7078846 1.636633539 1.67214744 1.431267633 1.59241928 1.758468941 1.774479157 1.638894361 1.349773123 1.491923791 1 8.549622525 -9.219875483 0.66461227 0.933987513 1.623619551 0.202886202 0.196351085 0.355889959 0.242699544 0.142346881 0.028163921 6.03E-10 9.219875483 0.689632038 NLVS(ph)PAYCTQESR ddPTM_HeLa_CUDC101_4h_R1 2 NLVSPAYCTQESR 13 0 Q9NUQ3 Q9NUQ3 TXLNG Gamma-taxilin 1 0 NLVS(0.861)PAYCT(0.139)QESR;NLVS(0.975)PAYCT(0.025)QESR ; 101.04 0.0089616 73773000 3749.7 3771.6 3310 2935.4 3534.1 3024.4 2559.9 2278.88 3258.6 2221.2 TRUE FALSE FALSE 3310.16585 3887.798526 3488.948612 3055.1183 3273.396484 2966.714609 2658.636201 2538.298488 3124.279129 2207.988204 1.499177326 1.760787725 1.580148212 1.383666043 1.482524444 1.343627925 1.204098915 1.149597848 1.414989049 1 11.10851675 -9.219270203 1.030426044 1.007669587 1.432012848 0.016251509 0.208221739 0.385170621 0.753192039 0.113910381 0.034060962 6.04E-10 9.219270203 0.424343261 LHGSVPNLS(ph)RYLESR ddPTM_HeLa_CUDC101_4h_R1 2 LHGSVPNLSRYLESR 15 1 J3QLK7;Q9BZF2-2;Q9BZF2 J3QLK7 OSBPL7 Oxysterol-binding protein-related protein 7 1 0 LHGSVPNLS(0.968)RY(0.013)LES(0.019)R;LHGSVPNLS(0.384)RY(0.231)LES(0.384)R ; 119.22 0.0047593 225092900 8298.71 7690.05 6550.66 6411.75 7635.18 8199.39 7158.36 7098.61 8161.41 8341.44 TRUE FALSE FALSE 7325.947794 7926.971326 6904.808494 6673.248879 7071.947983 8043.000297 7434.460343 7906.687069 7824.993225 8291.824744 0.883514548 0.955998417 0.832724847 0.804798592 0.852881989 0.969991594 0.896601239 0.953552121 0.943699785 1 13.01747391 -9.219064984 0.732068928 1.007930853 0.890622241 0.222940042 0.054358285 0.725234179 0.625825596 0.051821641 0.011180983 6.04E-10 9.219064984 -0.117308612 VDMVWIVGGS(ph)S(ph)VYK ddPTM_HeLa_CUDC101_4h_R1 1 VDMVWIVGGSSVYK 14 0 B4DM58;P00374-2;P00374 B4DM58 DHFR Dihydrofolate reductase 2 0 VDMVWIVGGS(0.917)S(0.542)VY(0.542)K 72.705 0.0027759 0 738.17 661.91 746.91 539.69 515.96 636 621.28 612.17 720.38 547.94 TRUE FALSE FALSE 651.6428316 682.3026625 787.2902139 561.7008909 477.8986587 623.8693596 645.2429777 681.8569583 690.6856315 544.6808285 1.196375561 1.252665096 1.445415687 1.031247772 0.877392105 1.1453852 1.184625828 1.251846811 1.268055704 1 9.089267278 -9.218690019 1.038307772 1.003348947 1.169653037 0 0.162078891 0.780579388 1.553708938 0.090651965 0.027318701 6.04E-10 9.218690019 0.16630409 HSDPTLPGTDSLPCS(ph)PPVSNSYTQADPMAPR ddPTM_HeLa_CUDC101_4h_R1 1 HSDPTLPGTDSLPCSPPVSNSYTQADPMAPR 31 0 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4 A0A0A0MTL6 FAM65A Protein FAM65A 1 0 HS(0.001)DPT(0.001)LPGT(0.009)DS(0.039)LPCS(0.928)PPVS(0.011)NS(0.004)Y(0.004)T(0.002)QADPMAPR 53.722 0.0055072 14435000 980.04 825.71 765.82 1010.5 1086.7 812.58 1011.7 524.35 1076.7 1115.8 TRUE FALSE FALSE 865.1611968 851.1491464 807.2225457 1051.712558 1006.536306 797.0813904 1050.721608 584.0398845 1032.31797 1109.163172 0.780012552 0.76737956 0.727776188 0.948203641 0.907473608 0.71863312 0.947310219 0.526559031 0.930717857 1 10.1152559 -9.217621256 0.826911101 1.007785025 0.798646374 0.239637313 0.121428115 0.670704365 0.778823836 0.090274453 0.021901641 6.06E-10 9.217621256 -0.20913865 EDQTEYLEER ddPTM_HeLa_CUDC101_4h_R1 2 EDQTEYLEER 10 0 P07900;P07900-2;G3V2J8;Q58FF6;P08238;Q58FF7 P07900;P08238 HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ; ; 215.83 9.07E-24 1463840000 6368.8 4713.5 4665.1 5098.9 4184.6 4821.7 4241.2 4055.1 5078.8 6919.1 FALSE FALSE TRUE 5622.258918 4858.717348 4917.309417 5306.855181 3875.910395 4729.734106 4404.784505 4516.716193 4869.449714 6877.944885 0.81743297 0.706419931 0.714938764 0.771575706 0.563527399 0.687666765 0.640421605 0.656695607 0.707980334 1 12.74776184 -7.902451282 0.377499208 1.026969727 0.625112501 0.196280419 0.100765098 0.257797113 0.09863596 0.041246667 0.025985404 1.25E-08 7.902451282 -0.401857226 EDQTEYLEERR ddPTM_HeLa_CUDC101_4h_R1 4 EDQTEYLEERR 11 1 P07900;P07900-2;G3V2J8;P08238;Q58FF7 P07900;P08238 HSP90AA1;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ;;; ;;; 148.78 0.00081321 103023000 9390.6 10582.8 10243.4 10284.4 13356.4 10703.6 11749.8 14358.1 11344.9 5833 FALSE FALSE TRUE 8289.848103 10908.84352 10797.18919 10703.84228 12371.12498 10499.44666 12202.99372 15992.56807 10877.25842 5798.305057 1.42970196 1.881384891 1.862128516 1.846029517 2.133576081 1.810778591 2.104579459 2.758145339 1.875937591 1 12.50141552 -1 0.089653287 0.211607162 6.548759323 0.393778465 0.336548306 36.49118581 0.237246119 2.26307191 28.58730813 0.1 1 6.337152161 DFTNEAPPAPLPDASASPLS(ph)PHRR ddPTM_HeLa_CUDC101_4h_R1 1 DFTNEAPPAPLPDASASPLSPHRR 24 1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DFTNEAPPAPLPDAS(0.136)AS(0.155)PLS(0.708)PHRR 91.1 5.01E-05 91258000 2110.3 1616.5 1824 1759.1 2424.9 1987 2054.7 1931.4 2288 2780.9 TRUE FALSE FALSE 1862.933833 1666.302449 1922.610957 1830.843701 2246.019958 1949.101286 2133.950467 2151.262769 2193.687672 2764.359083 0.673911665 0.602780753 0.695499716 0.66230314 0.812492115 0.705082526 0.771951256 0.778213938 0.793561041 1 11.43272931 -9.217420091 0.937371971 1.001373808 0.711453799 0.341035268 0.085030542 0.225696211 0.353947407 0.044195447 0.012109401 6.06E-10 9.217420091 -0.289920009 GS(ph)GDTSSLIDPDTSLSELR ddPTM_HeLa_CUDC101_4h_R1 2 GSGDTSSLIDPDTSLSELR 19 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 GS(0.566)GDT(0.381)S(0.017)S(0.036)LIDPDTSLSELR;GS(0.929)GDT(0.071)SSLIDPDTSLSELR ; 198.67 5.28E-17 10361700 1981.42 1726.23 1757.08 1640.84 1857.23 2031.63 1756.12 1623.38 2054.29 2508.71 TRUE FALSE FALSE 1749.160951 1779.4131 1852.07306 1707.760548 1720.225843 1992.880043 1823.854137 1808.179017 1969.611297 2493.788081 0.701407214 0.713538217 0.742674598 0.684805802 0.689804341 0.799137688 0.731358911 0.725073245 0.789807005 1 11.28412316 -9.216998856 0.775770222 1.015703046 0.722033469 0.358974812 0.070929626 0.164492754 0.163637128 0.030222889 0.00690312 6.07E-10 9.216998856 -0.293669578 S(ph)RQPSGAGLCDISEGTVVPEDR ddPTM_HeLa_CUDC101_4h_R1 1 SRQPSGAGLCDISEGTVVPEDR 22 1 H0Y332;Q5T5C0-3;Q5T5C0-2;Q5T5C0 H0Y332 STXBP5 Syntaxin-binding protein 5 1 0 S(0.884)RQPS(0.116)GAGLCDISEGTVVPEDR 90.37 0.00025568 8429600 1081.2 924.48 1025.7 886.03 1185.5 902.37 664.92 524.51 1097.4 528.82 TRUE FALSE FALSE 954.463375 952.962133 1081.152445 922.1661331 1098.048027 885.1587957 690.5661871 584.2180983 1052.164708 525.6745551 1.815692553 1.812836714 2.05669541 1.754252939 2.088836175 1.683853226 1.313676267 1.111368417 2.001551525 1 9.038026094 -9.216717377 0.930742796 0.995585626 1.72233002 0 0.4175833 0.432998281 0.667901507 0.211952511 0.057731501 6.07E-10 9.216717377 0.726744394 MRPNSNT(ph)PVNETATASDSK ddPTM_HeLa_CUDC101_4h_R1 2 MRPNSNTPVNETATASDSK 19 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 MRPNS(0.214)NT(0.786)PVNETATASDSK;MRPNS(0.009)NT(0.977)PVNET(0.014)ATASDSK ; 103.51 0.00013184 12800000 3910.2 3248.6 3545.7 2943.1 3186.7 3735.9 3658.1 4487.5 4664.4 4714.7 TRUE FALSE FALSE 3451.852283 3348.685515 3737.391267 3063.132339 2951.62349 3664.643932 3799.194142 4998.338861 4472.131458 4686.656755 0.736527649 0.714514779 0.797453593 0.653585807 0.629792973 0.781931369 0.810640578 1.066504146 0.954226369 1 12.19434342 -9.215976607 0.901798488 1.003333094 0.764693764 0.330680407 0.114212765 0.523230359 0.748889597 0.083121469 0.0219813 6.08E-10 9.215976607 -0.23863933 SHTPSPTS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 5 SHTPSPTSPK 10 0 B7Z385;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;P40123 B7Z385 CAP2 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 2 1 0 SHTPSPT(0.16)S(0.84)PK;SHTPSPT(0.067)S(0.933)PK;SHTPS(0.002)PT(0.205)S(0.793)PK;SHTPSPT(0.02)S(0.98)PK;SHT(0.005)PS(0.324)PT(0.019)S(0.652)PK ;;;; 131.79 0.0013407 984400000 35559 26917.9 34856.5 34316.9 34283.1 31813.9 30791.9 26264.6 37043.7 39084.8 TRUE FALSE FALSE 31390.82792 27747.20859 36740.94783 35716.49151 31754.10401 31207.10286 31979.5539 29254.4559 35516.74301 38852.32187 0.807952431 0.714171181 0.945656426 0.91928847 0.817302609 0.803223626 0.823105348 0.752965447 0.914147245 1 15.2457132 -9.215728563 0.856546152 1.005051729 0.825371931 0.347127954 0.069591267 0.442699718 0.560126252 0.051905948 0.013062407 6.09E-10 9.215728563 -0.179679798 KEKT(ph)PELPEPSVK ddPTM_HeLa_CUDC101_4h_R1 1 KEKTPELPEPSVK 13 2 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KEKT(0.978)PELPEPS(0.022)VK 96.414 0.039128 11860000 2131.8 1790.5 1884.7 1939.4 1830.4 1671 1848.3 1960.1 1838.6 2161.3 TRUE FALSE FALSE 1881.913636 1845.663183 1986.592583 2018.497115 1695.375039 1639.128459 1919.58955 2183.229861 1762.81213 2148.444491 0.875942405 0.859069522 0.924665539 0.9395156 0.78911745 0.762937309 0.893478774 1.016190956 0.820506248 1 11.06907679 -9.21510765 0.635446869 1.01478755 0.87620101 0 0.088418803 1.057700861 0.648972195 0.082904366 0.015908846 6.09E-10 9.21510765 -0.13858654 ESLPVSGEESQLT(ph)PEKSPK ddPTM_HeLa_CUDC101_4h_R1 1 ESLPVSGEESQLTPEKSPK 19 1 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 ESLPVS(0.002)GEES(0.08)QLT(0.916)PEKS(0.001)PK 97.776 0.0022008 17136000 5095.2 4362.2 4512.9 4468.3 4406.5 4156 4341.2 4895.1 4998.4 5372.6 TRUE FALSE FALSE 4497.94838 4496.594212 4756.881025 4650.536588 4081.441274 4076.731224 4508.641538 5452.338397 4792.363836 5340.643536 0.842210934 0.841957375 0.89069435 0.870782061 0.764222747 0.763340822 0.844213157 1.02091412 0.897338271 1 12.38279788 -9.214686444 0.694491873 1.013675239 0.847709949 0.139816648 0.075068561 0.721629153 0.549026425 0.070981719 0.014689373 6.10E-10 9.214686444 -0.165965289 GDS(ph)ESEEDEQDS(ph)EEVR ddPTM_HeLa_CUDC101_4h_R1 1 GDSESEEDEQDSEEVR 16 0 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 GDS(0.933)ES(0.311)EEDEQDS(0.756)EEVR 167.95 3.38E-05 12213000 1850.2 1697 1445.2 1437.1 1830.5 1796.2 1705.2 1281.6 1702.2 1770.4 TRUE FALSE FALSE 1633.322361 1749.282559 1523.331883 1495.71115 1695.467662 1761.940478 1770.970135 1427.492164 1632.034596 1759.869582 0.928092841 0.9939842 0.865593621 0.849898859 0.963405288 1.001176732 1.0063076 0.811135199 0.927361102 1 10.7812528 -9.214673959 0.642207728 1.007863124 0.929686048 0 0.067614845 1.65063422 1.039152588 0.07339757 0.014213114 6.10E-10 9.214673959 -0.078177076 EDSHPFDLGLYNEAVK ddPTM_HeLa_CUDC101_4h_R1 1 EDSHPFDLGLYNEAVK 16 0 B5MC59;P35244 B5MC59 RPA3 Replication protein A 14 kDa subunit 0 0 140.22 0.00030581 5952900 2108.1 2069.9 1651.8 1825.4 2246.3 1967.2 1805.7 1801.6 1991.5 2294.9 FALSE FALSE TRUE 1860.991714 2133.671166 1741.101304 1899.847702 2080.594924 1929.678938 1875.346454 2006.686862 1909.409527 2281.249833 0.815777249 0.935307977 0.763222546 0.832810013 0.912041678 0.84588672 0.822069739 0.87964362 0.837001498 1 11.15560874 -9.366398624 0.888628445 1.008304161 0.84817263 0 0.068421804 0.358887266 0.463583522 0.040197397 0.008490666 4.30E-10 9.366398624 -0.160131531 EDSQSDGFWWACDR ddPTM_HeLa_CUDC101_4h_R1 2 EDSQSDGFWWACDR 14 0 A0A2R8Y4E6;O95263-2;O95263-3;O95263-6;O95263-4;O95263;D6RH10;D6RJD7 A0A2R8Y4E6 PDE8B "High affinity cAMP-specific and IBMX-insensitive 3,5-cyclic phosphodiesterase 8B" 0 0 ; ; 166.03 7.76E-05 9159700 1347.28 1199.68 1159.6 1120.3 1559.86 1199.05 1340 1347.5 1171.38 602.09 FALSE FALSE TRUE 1189.353881 1236.640719 1222.291484 1165.990676 1444.792235 1176.180119 1391.684249 1500.893953 1123.095221 598.5087419 1.987195504 2.066203269 2.042228288 1.948159809 2.413986855 1.965184527 2.325253002 2.507722692 1.876489251 1 9.225228509 -9.973889046 0.251499879 9.63E-15 2.373914115 0.36416904 0.314811371 1.637269792 0.103020435 1.203260183 0.117819689 1.06E-10 9.973889046 2.373914115 EDSVKPGAHLTVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 EDSVKPGAHLTVKK 14 2 P51991;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 1 EDSVKPGAHLTVK(1)K 57.434 0.03492 2855700 5127.6 1675.8 1609.4 1496 8365.6 4840 4384.7 3205.8 6410.8 4218.2 FALSE TRUE FALSE 4526.550501 1727.429412 1696.409032 1557.013346 7748.486355 4747.685064 4553.819348 3570.735314 6146.544111 4193.109959 1.079521058 0.411968546 0.404570605 0.37132662 1.847909173 1.13225866 1.08602431 0.851572067 1.465867619 1 12.03380495 -5.774501338 24.99998423 0.891906659 1.212255594 0.193457735 0.408856701 372.7420175 713411.1658 0.060290334 0.109770263 1.68E-06 5.774501338 0.320348935 TVLPTVPES(ph)PEEEVK ddPTM_HeLa_CUDC101_4h_R1 5 TVLPTVPESPEEEVK 15 0 O75152;E9PBY7;E9PQ61;A0A1W2PPR9 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 TVLPT(0.463)VPES(0.537)PEEEVK;TVLPT(0.007)VPES(0.993)PEEEVK;TVLPTVPES(1)PEEEVK;TVLPTVPES(1)PEEEVK;TVLPTVPES(1)PEEEVK ;;;; 223.07 1.48E-32 187970400 21450.8 19275 17834.1 17524.1 19000.8 18745.5 18794.9 19182.2 19181 20893.7 TRUE FALSE FALSE 18936.36974 19868.8399 18798.26539 18238.80854 17599.14884 18387.96082 19519.82559 21365.82411 18390.35106 20769.42334 0.911742682 0.956638977 0.905093275 0.878156713 0.847358569 0.885338053 0.93983474 1.028715326 0.885453137 1 14.34217354 -9.214583838 0.651300627 1.009277933 0.913891147 0 0.058983648 1.012761975 0.659595128 0.055363845 0.010846249 6.10E-10 9.214583838 -0.095386786 EDTEEHHLR ddPTM_HeLa_CUDC101_4h_R1 2 EDTEEHHLR 9 0 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8VZ49;A0A2R8Y4L2;Q32P51;F8VYN5;P22626;P22626-2;A0A087WUI2 F8W6I7;P22626 HNRNPA1;HNRNPA1L2;HNRNPA2B1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2;Heterogeneous nuclear ribonucleoproteins A2/B1" 0 0 ; ; 138.08 0.0019616 41945000 10721.8 2916.6 13332.5 12729.8 5015.9 5316.4 6808.7 2657.6 13951.2 22030.4 FALSE FALSE TRUE 9465.006857 3006.456989 14053.29528 13248.97627 4645.88705 5214.998528 7071.31384 2960.130442 13376.12563 21899.3622 0.432204681 0.137285139 0.64172167 0.604993705 0.21214714 0.238134722 0.322900447 0.13516971 0.610799781 1 14.41860123 -13.52287875 0.163428245 3.672898437 0.152180435 0.415146697 0.202518667 23.86132096 0.258277873 20.21086828 0.298844416 3.00E-14 13.52287875 -3.520718001 EDTEEHHLRDYFEQYGK ddPTM_HeLa_CUDC101_4h_R1 2 EDTEEHHLRDYFEQYGK 17 1 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8VZ49;A0A2R8Y4L2;Q32P51;F8VYN5 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 ; ; 64.675 0.01387 31565000 5921.9 8963.5 9839.8 9682.9 22610 12281.8 14063 21824.6 10729.8 4490.1 FALSE FALSE TRUE 5227.743859 9239.654811 10371.76935 10077.81052 20942.10535 12047.54513 14605.41462 24309.02425 10287.5131 4463.392686 1.171248919 2.070096777 2.323741172 2.257881218 4.691970172 2.69919005 3.272267454 5.446310903 2.304863996 1 12.12392502 -5.761966649 0.428429407 0.901310101 5.012665263 0.596866748 0.850638414 0.638019494 0.17743792 0.222477301 1.118376179 1.73E-06 5.761966649 4.111355162 EDTEEYNLR ddPTM_HeLa_CUDC101_4h_R1 3 EDTEEYNLR 9 0 P51991;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 ;; ;; 171.99 1.50E-06 46737500 5908.6 4378.51 4394.68 4677.44 4363.85 4441.13 3540.94 3568.71 5037.4 5620.3 FALSE FALSE TRUE 5216.002865 4513.406703 4632.269694 4868.206221 4041.93748 4356.422845 3677.515242 3974.957521 4829.75624 5586.870206 0.93361805 0.807859595 0.829135012 0.871365548 0.723470804 0.779760883 0.65824247 0.711481988 0.864483344 1 12.44782459 -6.161849843 0.315254558 1.013949989 0.615882047 0.646287007 0.059173702 0.538235955 0.100983089 0.024621215 0.078581976 6.89E-07 6.161849843 -0.398067942 EDTLLTDEETTEGASIWMER ddPTM_HeLa_CUDC101_4h_R1 1 EDTLLTDEETTEGASIWMER 20 0 Q96KC9 Q96KC9 CABS1 Calcium-binding and spermatid-specific protein 1 0 0 83.137 0.016853 5966500 2783.3 2154.8 2254.5 1880.3 2500.8 2093.2 1730.5 2081.9 2326.3 2257 FALSE FALSE TRUE 2457.045793 2221.186834 2376.385089 1956.986761 2316.320966 2053.275698 1797.245965 2318.895081 2230.408929 2243.575264 1.095147479 0.990021093 1.059195619 0.872262586 1.032424008 0.915180217 0.801063371 1.033571335 0.994131539 1 11.13158387 -6.274090989 24.60068296 1.042052863 0.928454008 0.303576736 0.071628609 494.014827 960596.1729 0.010831013 0.016616961 5.32E-07 6.274090989 -0.113598855 EDVDDLVSQLR ddPTM_HeLa_CUDC101_4h_R1 3 EDVDDLVSQLR 11 0 P12270 P12270 TPR Nucleoprotein TPR 0 0 ;; ;; 125.71 0.016651 18976300 10204.3 9190 8161 7954.5 9141 9103.8 7667.7 8341.1 8944 11312.7 FALSE FALSE TRUE 9008.167423 9473.133007 8602.208346 8278.918892 8466.686641 8930.160183 7963.445758 9290.617108 8575.324534 11245.41156 0.801052712 0.84239985 0.764952737 0.736204171 0.752901448 0.794115906 0.708150673 0.826169595 0.762562089 1 13.45704884 -9.171093825 0.402907213 1.065444627 0.756628575 0 0.082120143 0.5417244 0.121920566 0.071703207 0.011946038 6.74E-10 9.171093825 -0.308816052 SSS(ph)LIQLTSQNSS(ph)PNQQR ddPTM_HeLa_CUDC101_4h_R1 1 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 2 0 S(0.003)S(0.016)S(0.981)LIQLTSQNS(0.395)S(0.604)PNQQR 149.33 2.38E-07 0 1150.3 1103.1 857.13 1018.3 885.18 1000.6 1149.1 991.28 1090.8 1213 TRUE FALSE FALSE 1015.463578 1137.085204 903.4690405 1059.830675 819.8820349 981.5152221 1193.421172 1104.123308 1045.836762 1205.785022 0.842159721 0.94302482 0.749278706 0.878954918 0.679957057 0.814005154 0.989746223 0.915688359 0.867349273 1 10.235757 -9.214548167 0.660349055 1.01583707 0.846705176 0.033224101 0.094977616 0.99106787 0.667350555 0.096771991 0.019178322 6.10E-10 9.214548167 -0.169131894 TAPTSTIAPGVVMASS(ph)PALPTQPAEEAAR ddPTM_HeLa_CUDC101_4h_R1 1 TAPTSTIAPGVVMASSPALPTQPAEEAAR 29 0 C9JBT4;C9J896;P16220;P16220-1;H7C1R5 C9JBT4 CREB1 Cyclic AMP-responsive element-binding protein 1 1 0 TAPTSTIAPGVVMAS(0.061)S(0.824)PALPT(0.115)QPAEEAAR 85.044 4.64E-06 11628000 1104.9 961.28 943.81 907.71 1108.9 1124.7 976.69 769.6 1033 1261.3 TRUE FALSE FALSE 975.3852969 990.8958974 994.8352235 944.7303373 1027.098656 1103.248221 1014.36126 857.2081532 990.4193028 1253.797732 0.777944697 0.790315593 0.793457508 0.753495012 0.819190074 0.879925201 0.809031022 0.683689348 0.789935472 1 10.29208891 -9.214172029 0.745098815 1.014257678 0.790320737 0 0.079857235 0.327694053 0.295914106 0.045019613 0.009937934 6.11E-10 9.214172029 -0.223936941 LGS(ph)PVDNLEDMDRDDLTDDSVFTR ddPTM_HeLa_CUDC101_4h_R1 2 LGSPVDNLEDMDRDDLTDDSVFTR 24 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 LGS(0.999)PVDNLEDMDRDDLT(0.001)DDSVFTR;LGS(0.946)PVDNLEDMDRDDLT(0.051)DDS(0.003)VFTR ; 63.427 0.01547 35918000 2966.09 2929.1 2431.3 2300.78 2793.49 2451.57 2387.48 2039.58 3051.6 2103.08 TRUE FALSE FALSE 2618.409427 3019.342099 2562.743432 2394.615753 2587.419808 2404.810387 2479.565903 2271.757543 2925.811756 2090.570787 1.252485418 1.444266857 1.225858243 1.145436341 1.237661898 1.150312825 1.186071249 1.086668558 1.399527715 1 11.02968118 -9.213498252 1.042399057 1.004683795 1.218859868 0 0.151943871 0.383235404 0.770868613 0.057249403 0.017428278 6.12E-10 9.213498252 0.214176073 EDVRPEEIADQELAEALQK ddPTM_HeLa_CUDC101_4h_R1 1 EDVRPEEIADQELAEALQK 19 1 Q5TDH0-3;Q5TDH0 Q5TDH0-3 DDI2 Protein DDI1 homolog 2 0 0 88.319 0.0011668 0 1000.2 1002.6 858.88 885.26 893.27 996.43 851.38 1094.8 994.29 781.5 FALSE FALSE TRUE 882.9580722 1033.488918 905.3136508 921.3647292 827.3752517 977.4247579 884.2180118 1219.427607 953.3049454 776.8516032 1.136585248 1.330355647 1.165362403 1.186024107 1.065036422 1.258187219 1.138207102 1.569704692 1.227139059 1 9.601495226 -1 0.078477621 0.801487653 2.202701536 0.153812411 0.137878298 134.7162013 0.779504297 2.201598062 20.62659197 0.1 1 1.401213883 NVS(ph)GHLPPGAPGK ddPTM_HeLa_CUDC101_4h_R1 2 NVSGHLPPGAPGK 13 0 A8MUP6 A8MUP6 Putative germ cell-specific gene 1-like protein 2 1 0 NVS(1)GHLPPGAPGK;NVS(1)GHLPPGAPGK ; 87.719 0.013451 83321000 18613.7 15970.2 13652.4 16577.2 16697.1 16198.9 15569.8 14876 14953.1 5499.4 TRUE FALSE FALSE 16431.8303 16462.22293 14390.49004 17253.28987 15465.3882 15889.93297 16170.3324 16569.42371 14336.72689 5466.689324 3.005810158 3.011369763 2.632395804 3.156076529 2.829022701 2.906683009 2.957975375 3.030979579 2.622561122 1 12.41645167 -9.213413257 0.670480705 0.801174342 2.96411907 0.244637719 0.516533469 0.126128785 0.08817166 0.158728246 0.03191287 6.12E-10 9.213413257 2.162944727 EDYDSVEQDGDEPGPQR ddPTM_HeLa_CUDC101_4h_R1 1 EDYDSVEQDGDEPGPQR 17 0 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 0 0 185.87 1.16E-17 0 526.43 427.41 518.5 298.41 581.59 468.75 474.75 341.68 501.28 499.31 FALSE FALSE TRUE 464.7226734 440.5779955 546.5316784 310.5804496 538.6872644 459.8093747 493.0612665 380.5754701 480.6170262 496.3400819 0.936298901 0.887653469 1.1011234 0.625741223 1.085318885 0.926399845 0.993394015 0.766763524 0.968322011 1 8.955185154 -13.52287873 0.100651308 1.278886196 0.85842903 0.052454245 0.132346375 271.9257351 2.04077344 15.83777409 1.034085104 3.00E-14 13.52287873 -0.420457166 SSGEIVYCGQVFEKS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 4 SSGEIVYCGQVFEKSPLR 18 1 M0R0P7;M0R3D6;M0R1A7;M0R117;Q02543 M0R0P7 RPL18A 60S ribosomal protein L18a 1 0 SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR ;;; 117.23 8.30E-05 395576000 12752.3 9950 11060.5 11705.8 10909.7 11405 9789 11223.2 11677.2 4402.49 TRUE FALSE FALSE 11257.49473 10256.54771 11658.46409 12183.21312 10104.91317 11187.46863 10166.56501 12500.80372 11195.86087 4376.303794 2.572375058 2.343655329 2.663997893 2.783904796 2.309006331 2.556373861 2.323093983 2.856475307 2.558291518 1 12.09549718 -9.213384018 0.631276094 0.810617017 2.570085819 0 0.512970964 0.205500518 0.124228023 0.203692762 0.038971605 6.12E-10 9.213384018 1.759468802 SSLS(ph)NNSLK ddPTM_HeLa_CUDC101_4h_R1 1 SSLSNNSLK 9 0 Q9ULJ7-2;Q9ULJ7 Q9ULJ7-2 ANKRD50 Ankyrin repeat domain-containing protein 50 1 0 S(0.012)S(0.012)LS(0.909)NNS(0.066)LK 102.52 0.015377 16612000 2701.6 2107.5 2396.9 2381.2 3022.6 2395.9 2416.5 2161.3 2702.7 3059.4 TRUE FALSE FALSE 2384.922543 2172.429577 2526.483664 2478.315628 2799.62882 2350.202199 2509.705214 2407.333656 2591.293562 3041.202553 0.784203782 0.714332419 0.830751527 0.814913044 0.920566378 0.772787132 0.825234482 0.791572943 0.852062142 1 11.57042619 -9.212704241 0.926860598 1.00131189 0.8078598 0.240495343 0.066406599 0.274634681 0.420062241 0.035675186 0.009728799 6.13E-10 9.212704241 -0.193452089 AADRLPNLS(ph)SPSAEGPPGPPSGPAPR ddPTM_HeLa_CUDC101_4h_R1 2 AADRLPNLSSPSAEGPPGPPSGPAPR 26 1 O60784-3;O60784-4;O60784;O60784-2 O60784-3 TOM1 Target of Myb protein 1 1 0 AADRLPNLS(0.492)S(0.492)PS(0.016)AEGPPGPPSGPAPR;AADRLPNLS(0.945)S(0.054)PS(0.001)AEGPPGPPSGPAPR ; 119.97 3.04E-10 90631000 2091.16 1679.22 1872.03 1896.96 2150.62 2261.6 1758.45 1817.14 2238.7 2935.5 TRUE FALSE FALSE 1846.037395 1730.954778 1973.237604 1974.326228 1991.973047 2218.463748 1826.274006 2023.995872 2146.419838 2918.039515 0.632629334 0.593191 0.676220316 0.676593383 0.682640875 0.760258295 0.625856503 0.693614964 0.735569147 1 11.5107837 -9.212426507 0.860118313 1.00876724 0.666801389 0.299440584 0.090615812 0.164011114 0.209891278 0.036616469 0.009292448 6.13E-10 9.212426507 -0.341965851 WDEQTSNTKGDDDEES(ph)DEEAVK ddPTM_HeLa_CUDC101_4h_R1 4 WDEQTSNTKGDDDEESDEEAVK 22 1 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 WDEQTSNTKGDDDEES(1)DEEAVK;WDEQT(0.004)S(0.009)NT(0.01)KGDDDEES(0.977)DEEAVK;WDEQT(0.002)S(0.002)NT(0.033)KGDDDEES(0.964)DEEAVK;WDEQTSNTKGDDDEES(1)DEEAVK ;;; 89.882 0.0002695 106474000 6662.5 5385.2 6437.5 6091.1 6474.2 6428.4 5545.4 5234.6 6070.5 9501.8 TRUE FALSE FALSE 5881.53185 5551.111629 6785.530722 6339.521386 5996.611164 6305.78898 5759.287936 5830.485705 5820.271421 9445.282871 0.622695152 0.587712587 0.718404183 0.671183857 0.634878939 0.667612507 0.609752827 0.617290746 0.616209329 1 13.20537829 -9.211649191 0.72304841 1.027804333 0.639140742 0 0.123522481 0.165377687 0.138988567 0.038838874 0.008367641 6.14E-10 9.211649191 -0.388663591 EEAEEEIDFEK ddPTM_HeLa_CUDC101_4h_R1 2 EEAEEEIDFEK 11 0 Q15477;B4E0B4 Q15477 SKIV2L Helicase SKI2W 0 0 ; ; 177.57 1.50E-06 4172700 1594.13 1520.35 1266.41 1412.86 1460.38 1666.68 1367.96 1082.87 1667.37 1286.17 FALSE FALSE TRUE 1407.268498 1567.190181 1334.875955 1470.482538 1352.650677 1634.890856 1420.722675 1206.139544 1598.640303 1278.519804 1.100701369 1.225784831 1.044079217 1.150144514 1.057981795 1.278737217 1.111224614 0.943387455 1.250383685 1 10.32025879 -8.735467594 0.835306723 1.005107465 1.119141236 0 0.117196844 0.681478115 0.940825015 0.042288725 0.017791902 1.84E-09 8.735467594 0.114033771 YSPIYSPDPYYASESEYWTYHGS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 YSPIYSPDPYYASESEYWTYHGSPK 25 0 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 YSPIYS(0.001)PDPY(0.011)Y(0.011)AS(0.068)ES(0.068)EY(0.062)WT(0.063)Y(0.051)HGS(0.664)PK 61.538 0.0030074 14433000 1515.9 1189.5 1288.6 1135.2 1620.4 1463.8 1123.5 1702.4 1481.7 1624 TRUE FALSE FALSE 1338.2085 1226.147085 1358.265614 1181.498363 1500.86632 1435.880454 1166.833771 1896.194335 1420.623699 1614.340376 0.828950648 0.759534423 0.841374988 0.731876858 0.929708717 0.889453349 0.722792906 1.174593886 0.880002582 1 10.65672908 -9.21123653 1.000944361 0.998113217 0.850394051 0.023772398 0.128383281 0.700442187 1.283773886 0.07122573 0.020938898 6.15E-10 9.21123653 -0.147719166 VFTVSY(ph)FHEDLQGQRSPK ddPTM_HeLa_CUDC101_4h_R1 1 VFTVSYFHEDLQGQRSPK 18 1 F8WE95;Q8NET5 F8WE95 NFAM1 NFAT activation molecule 1 1 0 VFT(0.084)VS(0.084)Y(0.739)FHEDLQGQRS(0.092)PK 52.453 0.030508 18431000 7403.7 6089.8 6546.3 6513.2 6560 6710.7 6347.9 5616.4 7231 7982.8 TRUE FALSE FALSE 6535.849509 6277.41952 6900.212779 6778.836448 6076.081869 6582.704578 6592.740629 6255.748274 6932.935119 7935.317951 0.823640533 0.791073472 0.86955719 0.854261479 0.765701123 0.829545157 0.830809889 0.788342485 0.873680823 1 12.95407231 -9.210664393 0.571901339 1.028716731 0.815465952 0.383818211 0.048885963 0.352706476 0.168829881 0.040060897 0.007157629 6.16E-10 9.210664393 -0.213250779 EEAENTLQSFR ddPTM_HeLa_CUDC101_4h_R1 2 EEAENTLQSFR 11 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ; ; 147.3 0.0049928 269500000 4547.3 4319.5 4155.5 3800.8 4274.7 4266.1 3379.5 3474 4668.2 4534.7 FALSE FALSE TRUE 4014.272387 4452.578675 4380.1589 3955.813052 3959.363897 4184.73125 3509.848447 3869.466118 4475.77482 4507.727403 0.89053131 0.987765736 0.97170004 0.877562616 0.87835034 0.928346121 0.778629259 0.858407302 0.992911598 1 12.13818456 -1 0.113701979 1.023076197 0.430912939 0.558721015 0.045592684 67.14023452 0.531331513 0.267309857 6.284481338 0.1 1 -0.592163258 K(ac)LLEGEEER ddPTM_HeLa_CUDC101_4h_R1 2 KLLEGEEER 9 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8;P20700;E9PBF6;Q03252 P02545;P02545-2;P20700;Q03252 LMNA;LMNB1;LMNB2 Prelamin-A/C;Lamin-A/C;Lamin-B1;Lamin-B2 0 1 ; K(1)LLEGEEER;K(1)LLEGEEER 142.83 0.0015882 12258300 3427.6 3057.9 3211.5 3717.9 6271.4 5695.9 6050.7 6557 2997 2821.2 FALSE TRUE FALSE 3025.821924 3152.110274 3385.123404 3869.532032 5808.771316 5587.260198 6284.077526 7303.422376 2873.462391 2804.419377 1.078947731 1.123979637 1.207067471 1.379797923 2.071291963 1.992305517 2.240776675 2.604254712 1.024619362 1 11.45348639 -5.544133241 0.751948655 1.022521785 2.560297392 0.956686192 0.117352753 0.111190406 0.103939737 0.020420999 0.100762252 2.86E-06 5.544133241 1.537775607 up QGS(ph)FSEDVISHK ddPTM_HeLa_CUDC101_4h_R1 4 QGSFSEDVISHK 12 0 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;H0Y390;Q9UPN3-5;E9PNZ4;H3BPE1;H3BQK9 A0A590UJG2;H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 QGS(0.952)FS(0.048)EDVISHK;QGS(0.863)FS(0.137)EDVISHK;QGS(0.956)FS(0.044)EDVISHK;QGS(0.978)FS(0.022)EDVISHK ;;; 148.97 0.00045663 216186000 21464 17120.7 18440.3 17950.7 20000 20309.9 18845 19683.4 19388.9 21574.4 TRUE FALSE FALSE 18948.02246 17648.16847 19437.2384 18682.80714 18524.63985 19922.5225 19571.85796 21924.07869 18589.68134 21446.07451 0.88351938 0.822909035 0.906330825 0.871152766 0.86377765 0.928958933 0.912607944 1.022288656 0.866810443 1 14.38842598 -9.210238511 1.005075949 0.998607199 0.898104211 0 0.063868779 0.450126473 0.833168309 0.03116759 0.009209711 6.16E-10 9.210238511 -0.100502987 S(ph)PSMISNDSETLEECMVCSDMKR ddPTM_HeLa_CUDC101_4h_R1 2 SPSMISNDSETLEECMVCSDMKR 23 1 Q86YT6 Q86YT6 MIB1 E3 ubiquitin-protein ligase MIB1 1 0 S(0.914)PS(0.082)MIS(0.004)NDSETLEECMVCSDMKR;S(0.566)PS(0.432)MIS(0.002)NDSETLEECMVCSDMKR ; 127.1 1.03E-07 17559800 1586.66 1412.88 1291.65 1307.96 1711.68 1403.53 1363.53 1437.6 1495.29 579.32 TRUE FALSE FALSE 1400.67412 1456.409158 1361.480506 1361.304262 1585.412777 1376.760004 1416.121809 1601.250573 1433.653513 575.8741789 2.432257204 2.529040564 2.364197868 2.363891823 2.753054113 2.39073057 2.459081968 2.780556295 2.489525605 1 9.169609826 -9.210036746 0.520542502 0.706155375 2.55690026 0 0.483301409 0.223335581 0.085949464 0.208234858 0.035247087 6.17E-10 9.210036746 1.850744886 VSPKEAGS(ph)MGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 VSPKEAGSMGSR 12 1 A0A087WW83;A0A087X0K8;Q6PRD1 A0A087WW83 GPR179 Probable G-protein coupled receptor 179 2 0 VSPKEAGS(1)MGS(1)R 69.878 0.039166 7011900 2678.9 2086.7 2202.6 2247.2 2916 2321.9 2390.2 2300.6 2630.1 2606.5 TRUE FALSE FALSE 2364.883403 2150.988754 2321.679219 2338.850529 2700.892489 2277.613626 2482.390815 2562.491005 2521.686165 2590.996422 0.91273125 0.830178203 0.896056513 0.902683813 1.042414596 0.879049313 0.958083459 0.98899828 0.973249574 1 11.33929131 -9.2098069 1.08734212 0.997628647 0.924837581 0.147994529 0.056703334 0.631972651 1.40093187 0.032409017 0.01029893 6.17E-10 9.2098069 -0.072791066 Y(ph)RQEILT(ph)ALDRDASCRK ddPTM_HeLa_CUDC101_4h_R1 1 YRQEILTALDRDASCRK 17 3 P51805 P51805 PLXNA3 Plexin-A3 2 0 Y(1)RQEILT(1)ALDRDASCRK 49.621 0.035682 466230000 3227.9 2665 2597.3 2937 2799.8 2332.2 2292.9 2413.6 2874.3 520.43 TRUE FALSE FALSE 2849.530455 2747.105491 2737.717894 3056.783555 2593.264332 2287.717171 2381.337921 2688.354468 2755.820137 517.3344592 5.508101006 5.310115037 5.291968949 5.908718239 5.01274231 4.422124082 4.603091634 5.196550162 5.326960322 1 9.014953481 -9.209411407 0.803740186 0.815279564 5.168300105 0 1.383339041 0.149172815 0.162294906 0.411751268 0.098267072 6.17E-10 9.209411407 4.35302054 AFLAELEQNS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 AFLAELEQNSPK 12 0 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;H0Y390;Q9UPN3-5;H3BPE1;H3BQK9 A0A590UJG2;H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 AFLAELEQNS(1)PK;AFLAELEQNS(1)PK ; 149.82 0.00064656 210180000 10105.6 8587.6 8711.1 8874.7 8727.1 9525.2 8323.6 8855.9 9914.7 9880.4 TRUE FALSE FALSE 8921.036887 8852.173777 9182.048416 9236.648626 8083.31922 9343.52268 8644.64404 9864.019859 9506.011869 9821.630941 0.90830504 0.901293668 0.934880212 0.940439391 0.823011908 0.951320889 0.880163803 1.004315874 0.967864902 1 13.2617469 -9.209326986 0.795443779 1.004037705 0.914897969 0.23411209 0.046022714 0.623732311 0.661773384 0.035095142 0.008293816 6.18E-10 9.209326986 -0.089139736 SQDQDS(ph)EVNELSR ddPTM_HeLa_CUDC101_4h_R1 1 SQDQDSEVNELSR 13 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 SQDQDS(1)EVNELSR 211.49 8.04E-24 21331000 1753.9 1542.2 1638.2 1432.8 1312.5 1429.2 1571.7 1020.9 1129.3 887.5 TRUE FALSE FALSE 1548.310501 1589.713354 1726.766047 1491.235777 1215.67949 1401.940391 1632.320995 1137.115129 1082.749776 882.2211105 1.755014114 1.80194436 1.957293956 1.690319761 1.377975969 1.589103202 1.850240236 1.288923055 1.227299781 1 9.784996473 -9.209314608 0.916297729 0.994121441 1.67442352 0.523785667 0.205524422 0.306656244 0.45703246 0.139328847 0.037744276 6.18E-10 9.209314608 0.680302078 EEASDYLELDTIK ddPTM_HeLa_CUDC101_4h_R1 2 EEASDYLELDTIK 13 0 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 0 ; ; 290.07 7.07E-103 68028000 5275.5 3935.1 4067 4120.1 4013.5 3930.3 3954.9 3501.7 4213.8 4810.4 FALSE FALSE TRUE 4657.113887 4056.335767 4286.874322 4288.135487 3717.432101 3855.336076 4107.441818 3900.319374 4040.10538 4781.787527 0.973927399 0.848288583 0.896500377 0.896764121 0.777414739 0.806254158 0.858976229 0.815661372 0.844894374 1 12.22333431 -7.019637746 0.771974033 0.996739368 0.821594761 0.233451437 0.059314034 0.174928271 0.211692905 0.008308358 0.011539083 9.56E-08 7.019637746 -0.175144607 EEASGSSVTAEEAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EEASGSSVTAEEAKK 15 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 1 ; EEASGSSVTAEEAK(1)K;EEASGSSVTAEEAK(1)K 376.63 5.24E-242 27881000 6311.6 3293.5 3590.5 3450.1 5521.8 4529.8 4967 4386.7 5157.3 4869 FALSE TRUE FALSE 5571.763816 3394.968831 3784.613291 3590.809991 5114.467815 4443.401612 5158.578854 4886.064196 4944.713911 4840.038971 1.151181602 0.701434193 0.781938599 0.741896917 1.056699718 0.918050792 1.065813495 1.009509267 1.02162688 1 12.24080295 -7.290861142 24.99770422 1.071391311 0.899631816 0.255917499 0.12516111 716.7774959 608995.9832 0.02353719 0.026917744 5.12E-08 7.290861142 -0.171759496 ALSS(ph)AGPIPIRPPIVPVK ddPTM_HeLa_CUDC101_4h_R1 1 ALSSAGPIPIRPPIVPVK 18 1 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 ALS(0.241)S(0.759)AGPIPIRPPIVPVK 95.429 0.0019322 66422000 3089.5 2376.3 2369.8 2805.4 3312.2 3197.4 2605.8 3214.5 3133.1 3964.2 TRUE FALSE FALSE 2727.353493 2449.510986 2497.918556 2919.816338 3067.865605 3136.414922 2706.306579 3580.425687 3003.952292 3940.620762 0.692112654 0.62160536 0.63388961 0.740953396 0.778523433 0.795918996 0.686771639 0.908594331 0.762304336 1 11.9442072 -9.209135272 0.957268505 0.999390737 0.727670832 0.09933938 0.10681006 0.296248529 0.489581242 0.05457556 0.015421714 6.18E-10 9.209135272 -0.271719905 CPFPAGAALACCS(ph)EDEEDDEEHEGGGSR ddPTM_HeLa_CUDC101_4h_R1 2 CPFPAGAALACCSEDEEDDEEHEGGGSR 28 0 Q147X3 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 CPFPAGAALACCS(1)EDEEDDEEHEGGGSR;CPFPAGAALACCS(1)EDEEDDEEHEGGGSR ; 170.37 1.47E-18 31027500 3073.3 2520.64 2414.82 2477.12 2698.3 2592.61 2912.23 2355.56 2429.83 258.288 TRUE FALSE FALSE 2713.052433 2598.297931 2545.372474 2578.147661 2499.251785 2543.160284 3024.555687 2623.707429 2329.671379 256.7516915 10.56683373 10.11988632 9.913751527 10.04140477 9.734120037 9.90513546 11.78008086 10.21885158 9.073635953 1 8.004229971 -9.20907303 0.653672507 7.36E-17 10.4349248 0.189197516 2.541310218 0.123107195 0.081127963 0.73677022 0.145831531 6.18E-10 9.20907303 10.4349248 EEATQVLGEAR ddPTM_HeLa_CUDC101_4h_R1 1 EEATQVLGEAR 11 0 C9JFR9;Q9UNU6 C9JFR9 CYP8B1 7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase 0 0 122.33 0.020703 5713400 974.23 646.4 885.89 792.85 834.81 814.09 665.79 690.32 668.03 715.73 FALSE FALSE TRUE 860.0322362 666.3148178 933.7838931 825.18585 773.2277295 798.5625896 691.4697433 768.9032384 640.4935206 711.4728061 1.208805493 0.936528863 1.312466035 1.159827674 1.086798712 1.122407747 0.971884993 1.080720488 0.900236123 1 9.474664805 -4.780508035 24.80005935 1.109075136 1.026302718 0.026874955 0.120735144 381.2713498 495870.6713 0.015427873 0.046397034 1.66E-05 4.780508035 -0.082772418 DEEDT(ph)SFESLSK ddPTM_HeLa_CUDC101_4h_R1 1 DEEDTSFESLSK 12 0 H7C3L4;E7EQA9;Q92844 H7C3L4 TANK TRAF family member-associated NF-kappa-B activator 1 0 DEEDT(0.672)S(0.328)FESLSK 234.87 3.33E-42 4551100 5064.7 4570.5 4202.9 4559.8 4382.2 4502.5 4142.8 2847.9 5494.9 3130.3 TRUE FALSE FALSE 4471.023544 4711.311688 4430.121487 4745.768353 4058.933837 4416.622314 4302.589184 3172.093424 5268.397896 3111.680836 1.436851586 1.514072919 1.423706903 1.525146248 1.304418432 1.419368678 1.382721882 1.019414777 1.693103558 1 11.60347838 -9.209070575 0.933073149 0.998414648 1.388636135 0 0.252485566 0.349884412 0.544395379 0.091761774 0.025304067 6.18E-10 9.209070575 0.390221487 KPIETGS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 KPIETGSPK 9 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 KPIET(0.05)GS(0.95)PK;KPIET(0.015)GS(0.985)PK ; 80.312 0.022804 844820000 7228.1 2984.2 10991.5 10665.3 4497.8 5638.7 7631.6 3775.1 10894.6 16590.1 TRUE FALSE FALSE 6380.833075 3076.139665 11585.73374 11100.27703 4166.006255 5531.151192 7925.953368 4204.842125 10445.51998 16491.42135 0.386918322 0.186529687 0.70253094 0.673094017 0.252616568 0.335395663 0.480610689 0.254971481 0.633391128 1 14.00942813 -9.208956422 0.719455538 1.046438629 0.4099683 0.345259547 0.197814497 0.426513244 0.354625026 0.163515884 0.035195072 6.18E-10 9.208956422 -0.636470329 PGS(ph)LPLNAEACWPK ddPTM_HeLa_CUDC101_4h_R1 2 PGSLPLNAEACWPK 14 0 Q01581;D6RIW1 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 1 0 PGS(1)LPLNAEACWPK;PGS(1)LPLNAEACWPK ; 122.31 0.0013235 45601000 3524 3147.5 2625.8 3219.2 2856.38 2527.71 2640.2 3324.3 2742.17 1555.07 TRUE FALSE FALSE 3110.922062 3244.470744 2767.758691 3350.492891 2645.670538 2479.498143 2742.033398 3702.724875 2629.136592 1545.820374 2.012473191 2.098866594 1.790478853 2.167452924 1.711499332 1.604001464 1.773837015 2.3953138 1.700803428 1 10.59415697 -9.20863795 0.823661721 0.965131825 1.931128755 0.271889252 0.309342412 0.297387008 0.343408841 0.184024747 0.045011012 6.19E-10 9.20863795 0.96599693 DCCVEPGTELS(ph)PTLPHQL ddPTM_HeLa_CUDC101_4h_R1 1 DCCVEPGTELSPTLPHQL 18 0 Q14012 Q14012 CAMK1 Calcium/calmodulin-dependent protein kinase type 1 1 0 DCCVEPGT(0.005)ELS(0.993)PT(0.002)LPHQL 174.4 1.83E-07 10884000 1316.6 1103 1065.4 983.76 1169.4 1017.8 1160.6 1010.4 1152.7 110.29 TRUE FALSE FALSE 1162.270144 1136.982123 1122.998747 1023.881985 1083.135692 998.3871608 1205.364731 1125.419852 1105.185218 109.6339902 10.6013668 10.37070822 10.24316222 9.339092587 9.879560983 9.106547697 10.99444368 10.26524575 10.08068042 1 6.776551341 -9.20832408 0.727169603 0.320638207 10.16715917 0 2.843459998 0.111823681 0.095448408 0.66657732 0.144998983 6.19E-10 9.20832408 9.846520959 (ac)MEGAAAPVAGDRPDLGLGAPGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 MEGAAAPVAGDRPDLGLGAPGSPR 24 1 O60285;O60285-2 O60285 NUAK1 NUAK family SNF1-like kinase 1 1 0 MEGAAAPVAGDRPDLGLGAPGS(1)PR;MEGAAAPVAGDRPDLGLGAPGS(1)PR ; 69.581 5.53E-09 13092000 0 0 0 0 166.77 0 58.511 0 62.923 346.98 TRUE FALSE FALSE 0 0 0 0 154.4677094 0 60.76778887 0 60.32928731 344.9161475 0 0 0 0 0.447841339 0 0.176181339 0 0.174910011 1 8.430101861 -9.208023714 0.817675466 1.036159393 0.078646116 0.132235729 0.285388443 0.189910664 0.21552642 0.116104759 0.02822243 6.19E-10 9.208023714 -0.957513277 LLPS(ph)PVTCTPK ddPTM_HeLa_CUDC101_4h_R1 1 LLPSPVTCTPK 11 0 Q9BU19-2;Q9BU19;H0YCH4;Q9BU19-5 Q9BU19-2 ZNF692 Zinc finger protein 692 1 0 LLPS(0.771)PVT(0.227)CT(0.001)PK 123.26 0.003538 35559000 2272.6 1981.4 1785.6 2075.1 1877.6 2270.6 1758.4 1898.1 2099.8 1815.7 TRUE FALSE FALSE 2006.209273 2042.444585 1882.134937 2159.731547 1739.093189 2227.292088 1826.222077 2114.172032 2013.245355 1804.900136 1.111534779 1.131610855 1.042791731 1.196593376 0.96353984 1.23402511 1.011813363 1.171351251 1.115433101 1 10.8177033 -9.207873492 0.729279206 0.992158907 1.10661581 0 0.086821584 0.943264919 0.811008478 0.06544341 0.014282162 6.20E-10 9.207873492 0.114456903 YPS(ph)CESVTDEYAGHLIQILK ddPTM_HeLa_CUDC101_4h_R1 2 YPSCESVTDEYAGHLIQILK 20 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 YPS(0.956)CES(0.044)VTDEYAGHLIQILK;YPS(0.494)CES(0.142)VT(0.356)DEY(0.008)AGHLIQILK ; 133.65 5.11E-07 14576000 4088.9 3564.4 3087.9 3281.8 4353.5 3492.1 3328.3 3129.1 3960.7 2043.75 TRUE FALSE FALSE 3609.60534 3674.214939 3254.841214 3415.645989 4032.350978 3425.494011 3456.673646 3485.304096 3797.43827 2031.593684 1.776735855 1.808538276 1.602112292 1.681264328 1.984821576 1.686111764 1.701459142 1.715551748 1.869191807 1 10.98839618 -9.207767279 0.694362667 0.933303867 1.753500991 0 0.285720136 0.214880198 0.164004607 0.104269027 0.021773682 6.20E-10 9.207767279 0.820197124 S(ph)TPAMMNGQGSTT(ph)SSSK ddPTM_HeLa_CUDC101_4h_R1 1 STPAMMNGQGSTTSSSK 17 0 Q6ZN18-2;Q6ZN18;F5GZR7;A0A669KBC9;A0A669KBL4;G5EA50;Q6ZN18-3 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 2 0 S(0.728)T(0.25)PAMMNGQGS(0.11)T(0.099)T(0.345)S(0.297)S(0.089)S(0.083)K 43.261 0.0033588 0 351.02 318.07 319.56 171.5 271.86 381.87 399.51 409.49 362.58 498.66 TRUE FALSE FALSE 309.8739677 327.8693597 336.8363802 178.4945113 251.8054294 374.586466 414.9192345 456.1046864 347.6342989 495.6939481 0.625131634 0.661435067 0.679524899 0.360090156 0.507985684 0.755680935 0.837047206 0.920133659 0.701308338 1 8.953305835 -9.207566358 0.859841536 1.008389793 0.660013057 0.048435285 0.174507433 0.54441031 0.697559825 0.123591483 0.031556412 6.20E-10 9.207566358 -0.348376736 GGTPAFLPSSLS(ph)PQSSLPASR ddPTM_HeLa_CUDC101_4h_R1 1 GGTPAFLPSSLSPQSSLPASR 21 0 E5RGS7;B3KPU0;H0YBP7;A0A087WVI1;Q96JY6;Q96JY6-3;Q96JY6-5 E5RGS7;Q96JY6 PDLIM2 PDZ and LIM domain protein 2 1 0 GGTPAFLPS(0.083)S(0.375)LS(0.54)PQS(0.001)S(0.001)LPASR 161.31 2.15E-07 30994000 1006.3 828.72 844.6 962.58 1154.4 977.81 811.74 617.39 866.3 1238.5 TRUE FALSE FALSE 888.3430395 854.2518809 890.2616308 1001.838173 1069.242212 959.1599034 843.0490837 687.671182 830.5907473 1231.133347 0.721565249 0.693874374 0.723123643 0.813752771 0.868502356 0.779086933 0.684774794 0.558567586 0.674655389 1 10.26577132 -9.207436865 0.735609208 1.018868575 0.734283392 0 0.127595385 0.459831817 0.403840045 0.079644313 0.017530287 6.20E-10 9.207436865 -0.284585183 EEEEAEDKEDDEDKDEDEEDEEDKEEDEEEDVPGQAK ddPTM_HeLa_CUDC101_4h_R1 1 EEEEAEDKEDDEDKDEDEEDEEDKEEDEEEDVPGQAK 37 3 P27797 P27797 CALR Calreticulin 0 0 50.2 0.0047482 21570000 1837.5 1456.8 1415.8 1587.9 829.54 1289.8 1166 1053.1 1343.3 1584.5 FALSE FALSE TRUE 1622.111035 1501.682281 1492.342431 1652.661425 768.3464869 1265.199214 1210.973011 1172.980647 1287.928605 1575.075324 1.029862516 0.953403471 0.947473691 1.049258661 0.48781571 0.803262673 0.768834984 0.744714002 0.817693342 1 10.62120511 -5.78676984 24.99999255 1.006016912 0.713284185 0.596876502 0.103509397 77.61578479 76603.00948 0.01175579 0.021315001 1.63E-06 5.78676984 -0.292732727 EEEEEEEEDQEGDR ddPTM_HeLa_CUDC101_4h_R1 1 EEEEEEEEDQEGDR 14 0 A0A0B4J2E5;Q15269 A0A0B4J2E5 PWP2 Periodic tryptophan protein 2 homolog 0 0 132.56 0.00025437 0 214.16 320.19 272.8 214.09 245.42 211.27 256.73 189.76 223.27 171.51 FALSE FALSE TRUE 189.0564894 330.0546744 287.5483932 222.8215156 227.3158555 207.2403767 266.6321621 211.3615114 214.0667161 170.4898509 1.108901723 1.935919779 1.686601236 1.306948856 1.33331019 1.215558437 1.563918091 1.239730754 1.255598002 1 7.413542049 -7.488980938 22.60108149 1.048044205 1.464183001 0.333378988 0.219404336 92.89736149 61939.7355 0.037387227 0.041350428 3.24E-08 7.488980938 0.416138796 EEEEEEEEDQEGDRETTIR ddPTM_HeLa_CUDC101_4h_R1 2 EEEEEEEEDQEGDRETTIR 19 1 A0A0B4J2E5;Q15269 A0A0B4J2E5 PWP2 Periodic tryptophan protein 2 homolog 0 0 ; ; 178.47 5.19E-08 23583000 2856.5 2134.83 2288.64 1999.16 2325.76 2083.56 2117.03 2029.31 2364.45 2263.95 FALSE FALSE TRUE 2521.6654 2200.601582 2412.370801 2080.694386 2154.193318 2043.819564 2198.684556 2260.318448 2266.98637 2250.483925 1.120499184 0.977834837 1.071934251 0.924554209 0.957213377 0.908168924 0.976983009 1.004369959 1.007332843 1 11.13601954 -6.26454205 24.99085459 1.052184715 0.953124096 0.414273703 0.046226688 197.9137734 1594121.986 0.008368803 0.013127608 5.44E-07 6.26454205 -0.099060618 TTGT(ph)PPDSSLVTYELHSRPEQDK ddPTM_HeLa_CUDC101_4h_R1 1 TTGTPPDSSLVTYELHSRPEQDK 23 1 Q13561;Q13561-3;Q13561-2;H0YI98;F8VW18;F8W1I6 Q13561 DCTN2 Dynactin subunit 2 1 0 T(0.207)T(0.207)GT(0.583)PPDS(0.002)S(0.001)LVTYELHSRPEQDK 82.381 0.00026955 26322000 4027.1 3359.2 3567 3378.6 3907.1 3570.1 3251.1 3262.7 3654.2 4567.6 TRUE FALSE FALSE 3555.049443 3462.69297 3759.84281 3516.393912 3618.881017 3502.006291 3376.496016 3634.11258 3503.572329 4540.431712 0.782976084 0.762635183 0.828080466 0.77446246 0.797034566 0.771293681 0.743650875 0.800389216 0.771638591 1 12.14861376 -9.207380904 0.598120823 1.030852204 0.777185397 0 0.074215975 0.204138625 0.108846188 0.028279629 0.005234376 6.20E-10 9.207380904 -0.253666807 DSEGFNS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 DSEGFNSPK 9 0 O43303-2;O43303;I3L262 O43303-2 CCP110 Centriolar coiled-coil protein of 110 kDa 1 0 DSEGFNS(1)PK 87.568 0.032102 15880000 3646.8 3343.4 3021.5 3373.3 3122.5 3110.8 2852.5 2690.6 3557.8 2770 TRUE FALSE FALSE 3219.327632 3446.406191 3184.85143 3510.877755 2892.159396 3051.466673 2962.521881 2996.887028 3411.145978 2753.523917 1.169166395 1.25163474 1.156645639 1.275048941 1.050348384 1.108204165 1.075901997 1.088382421 1.238829253 1 11.42706342 -9.207377122 1.012621214 1.002377038 1.147945709 0 0.100282317 0.444764612 0.838335808 0.044650864 0.013334383 6.20E-10 9.207377122 0.145568671 SPVGKS(ph)PPSTGSTYGSSQK ddPTM_HeLa_CUDC101_4h_R1 2 SPVGKSPPSTGSTYGSSQK 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.038)PVGKS(0.954)PPS(0.001)T(0.002)GS(0.002)T(0.003)YGSSQK;S(0.065)PVGKS(0.666)PPS(0.118)T(0.088)GS(0.042)T(0.015)Y(0.005)GS(0.001)SQK ; 94.845 0.001351 199223000 3951.7 3044.1 3666.24 3804.1 3766.48 3077.71 3039.86 3414 3635.2 4982.9 TRUE FALSE FALSE 3488.487716 3137.885113 3864.448024 3959.247641 3488.634274 3019.00781 3157.108418 3802.63596 3485.355517 4953.261489 0.704280952 0.63349878 0.780182519 0.799321346 0.70431054 0.609498977 0.637379719 0.767703455 0.703648601 1 12.27416307 -9.206627166 0.605652412 1.040912279 0.696631799 0 0.110712074 0.429916922 0.236258641 0.081389815 0.015218595 6.21E-10 9.206627166 -0.344280481 APS(ph)RQDVYGPQPQVR ddPTM_HeLa_CUDC101_4h_R1 2 APSRQDVYGPQPQVR 15 1 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-19;O60716-4;O60716-6;O60716-11;O60716-13;O60716-21;O60716-24;O60716-9;O60716-17;O60716-16;O60716-10;O60716-23;O60716-15;O60716-18;O60716-12;O60716-22;O60716-20;O60716-14 O60716-5 CTNND1 Catenin delta-1 1 0 APS(1)RQDVYGPQPQVR;APS(1)RQDVYGPQPQVR ; 135.86 0.0027098 250525500 3129.5 2623.7 2663 2554 3093.7 2872 2402.2 2535.5 2573.3 2317.2 TRUE FALSE FALSE 2762.664754 2704.533087 2806.969835 2658.163159 2865.483915 2817.221385 2494.853659 2824.131071 2467.227485 2303.417191 1.199376632 1.17413949 1.218611134 1.154008561 1.244014295 1.223061717 1.083109768 1.226061472 1.071116207 1 11.16956002 -9.206267793 0.719368959 0.985395978 1.19087903 0.604424374 0.048729925 0.332539409 0.276787622 0.04112795 0.008883056 6.22E-10 9.206267793 0.205483051 EEEEVGFDWSDR ddPTM_HeLa_CUDC101_4h_R1 2 EEEEVGFDWSDR 12 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 280.55 4.10E-86 9161100 7489.5 5345.8 5356.8 5335.8 4410.6 5076.4 4834.4 3732.2 6288.6 6220.1 FALSE FALSE TRUE 6611.592163 5510.497762 5646.404811 5553.416987 4085.238825 4979.576128 5020.864427 4157.058562 6029.381246 6183.102569 1.069300095 0.891218883 0.91319928 0.898160256 0.660710182 0.805352341 0.812029943 0.672325668 0.975138481 1 12.59411522 -6.426134202 1.014427923 1.031280321 0.746285464 0.71916587 0.067283454 0.169640928 0.347484434 0.012102959 0.023009255 3.75E-07 6.426134202 -0.284994857 EEEMGEEEEVER ddPTM_HeLa_CUDC101_4h_R1 2 EEEMGEEEEVER 12 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8Y8C1;A0A2R8Y445;A0A2R8YER1;A0A2R8YE38;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8Y5Z7 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 0 0 ; ; 186.74 4.90E-10 22702000 3217.5 2513.8 2207.9 2375 2150.75 2196.9 1936.69 1659.37 2748.7 2875.8 FALSE FALSE TRUE 2840.349527 2591.247198 2327.265753 2471.862766 1992.093457 2154.997793 2011.388782 1848.265973 2635.397423 2858.694614 0.993582705 0.906444216 0.814100863 0.864682346 0.696854238 0.753839806 0.703603936 0.646541944 0.921888407 1 11.48114079 -6.306091912 0.65885072 1.005372367 0.672738489 0.855615691 0.045686557 0.132154484 0.112052852 0.007983377 0.019943831 4.94E-07 6.306091912 -0.332633878 T(ph)SSLDTLAAPYLAGHWPR ddPTM_HeLa_CUDC101_4h_R1 2 TSSLDTLAAPYLAGHWPR 18 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 T(0.373)S(0.373)S(0.245)LDT(0.01)LAAPYLAGHWPR;T(0.375)S(0.375)S(0.245)LDT(0.005)LAAPYLAGHWPR ; 206.63 9.96E-24 77399000 4148.3 3618.4 3279.2 3249.8 3797.4 3963.1 3097.6 3002.4 3517.2 5122.1 TRUE FALSE FALSE 3662.042562 3729.878615 3456.483471 3382.340891 3517.273367 3887.51047 3217.07547 3344.18108 3372.219527 5091.633521 0.719227444 0.732550487 0.67885551 0.664293861 0.690794684 0.763509482 0.631835629 0.65679925 0.662306019 1 12.31391287 -9.205253138 0.452818318 1.077538859 0.674832673 0 0.110766232 0.342225146 0.096726804 0.063695815 0.0103085 6.23E-10 9.205253138 -0.402706185 RPNEDS(ph)DEDEEKGAVVPPVHDIYR ddPTM_HeLa_CUDC101_4h_R1 5 RPNEDSDEDEEKGAVVPPVHDIYR 24 2 Q12996;H0YE74;E9PLP8 Q12996 CSTF3 Cleavage stimulation factor subunit 3 1 0 RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR ;;;; 71.042 0.00029789 2453402000 12006.8 10148.3 10171.6 10255.1 11147.5 10159.3 9969.6 10423.1 10542.6 8950.4 TRUE FALSE FALSE 10599.38111 10460.95709 10721.50746 10673.3473 10325.17113 9965.528279 10354.13081 11609.62357 10108.02957 8897.162623 1.191321498 1.175763278 1.205047937 1.199634957 1.160501563 1.120079367 1.163756498 1.304868087 1.136095854 1 13.11912961 -9.204077453 0.66002645 0.980367601 1.189114352 0.294610584 0.061299496 0.408095768 0.276034934 0.049055666 0.009853165 6.25E-10 9.204077453 0.208746751 STS(ph)FRGGMGSGGLATGIAGGLAGMGGIQNEK ddPTM_HeLa_CUDC101_4h_R1 1 STSFRGGMGSGGLATGIAGGLAGMGGIQNEK 31 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.051)T(0.242)S(0.269)FRGGMGS(0.196)GGLAT(0.242)GIAGGLAGMGGIQNEK 66.014 0.0014554 116480000 1571.1 1316.1 1168.5 1246.9 1838.5 1414.7 1460.4 1611.7 1416.2 1999.1 TRUE FALSE FALSE 1386.93804 1356.647481 1231.672645 1297.753972 1702.877518 1387.716955 1516.728117 1795.169413 1357.823637 1987.209264 0.697932555 0.682689793 0.619800172 0.653053503 0.856919072 0.698324519 0.763245293 0.903362039 0.683281656 1 10.95652809 -9.203581362 0.919992277 1.001728397 0.729674728 0 0.127473333 0.330134743 0.497780316 0.05993482 0.016420926 6.26E-10 9.203581362 -0.272053669 SVSPTTEMVS(ph)NESVDYR ddPTM_HeLa_CUDC101_4h_R1 2 SVSPTTEMVSNESVDYR 17 0 P08581;P08581-2 P08581 MET Hepatocyte growth factor receptor 1 0 SVSPTT(0.049)EMVS(0.854)NES(0.097)VDYR;SVSPTTEMVS(1)NESVDYR ; 155.63 6.91E-05 10216100 1976.29 1869.81 1272.21 1942.4 1770.09 1673.95 1593.18 1657.6 1431.2 1534.42 TRUE FALSE FALSE 1744.632282 1927.41663 1340.989521 2021.619468 1639.513987 1642.022193 1654.629486 1846.294484 1372.20533 1525.293202 1.143801258 1.263636806 0.879168359 1.325397285 1.074884478 1.076528887 1.084794376 1.210452182 0.899633807 1 10.57487088 -9.203553514 0.916975672 0.998950333 1.129298464 0.242469823 0.120554225 0.845281099 1.264664047 0.073439536 0.020058225 6.26E-10 9.203553514 0.130348131 EEFASTCPDDEEIELAYEQVAK ddPTM_HeLa_CUDC101_4h_R1 1 EEFASTCPDDEEIELAYEQVAK 22 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 0 171 1.44E-09 26942000 3641.7 3355.1 3461.4 3317.6 3580 3399.1 3502.4 3360.5 3796.9 2676.8 FALSE FALSE TRUE 3214.825446 3458.466654 3648.533754 3452.906068 3315.910532 3334.267831 3637.488741 3743.045736 3640.390175 2660.878275 1.208182079 1.299746286 1.371176498 1.29765653 1.246171448 1.25307041 1.367025608 1.406695591 1.368116013 1 11.3776868 -8.411881523 0.432460736 0.968159272 1.339695864 0 0.124460417 0.350748658 0.138966193 0.056114397 0.021713563 3.87E-09 8.411881523 0.371536591 EEFTAFLHPEEFEHMK ddPTM_HeLa_CUDC101_4h_R1 3 EEFTAFLHPEEFEHMK 16 0 Q15293;Q15293-2;E9PP27 Q15293 RCN1 Reticulocalbin-1 0 0 ;; ;; 144.88 0.00019619 41460600 6449.6 5627.1 5332.4 5432.1 6222.9 5593.6 5511.9 5248.1 6121 6492 FALSE FALSE TRUE 5693.587665 5800.464281 5620.685674 5653.644518 5763.849065 5486.9114 5724.495829 5845.52249 5868.689789 6453.385295 0.882263712 0.898825038 0.870967007 0.876074224 0.893151238 0.850237689 0.887053162 0.905807142 0.909397087 1 12.65584045 -9.1979792 0.601232888 1.01598312 0.879566148 0.314219812 0.031507037 0.24124189 0.13091989 0.017994547 0.00338435 6.34E-10 9.1979792 -0.136416972 EEFTAFLHPEEYDYMK ddPTM_HeLa_CUDC101_4h_R1 2 EEFTAFLHPEEYDYMK 16 0 O43852;O43852-3;O43852-15;O43852-2;O43852-4;H0Y875;O43852-10;O43852-6 O43852 CALU Calumenin 0 0 ; ; 118.19 0.00053904 38502000 4468.82 4007 3658.5 3137.25 4270.38 4073.29 3321.31 2633.32 4134.01 5132.7 FALSE FALSE TRUE 3944.991694 4130.450921 3856.289576 3265.200615 3955.362575 3995.59878 3449.414039 2933.086505 3963.604358 5102.170472 0.773198723 0.809547808 0.75581355 0.639963058 0.775231364 0.78311746 0.676067971 0.574870346 0.776846713 1 12.31689539 -13.52287875 0.118475947 1.972523891 0.568369948 0.32136438 0.089068213 29.16013403 0.250176721 6.738144264 0.283350452 3.00E-14 13.52287875 -1.404153943 ILLDPYS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 ILLDPYSR 8 0 P60606 P60606 CTXN1 Cortexin-1 1 0 ILLDPY(0.095)S(0.905)R 71.877 0.039136 15226000 4349.1 3499.6 3861.2 4031.1 3945.5 3414.6 3213.1 3611 3278.4 2719.4 TRUE FALSE FALSE 3839.305091 3607.418528 4069.948151 4195.505682 3654.448326 3349.472194 3337.030343 4022.061644 3143.262964 2703.224888 1.420268476 1.334487021 1.505589923 1.552037236 1.351884685 1.239065314 1.234462718 1.487875338 1.162782637 1 11.40046582 -9.203149261 0.805858346 0.983787126 1.388873286 0.533340059 0.111821814 0.35080914 0.385192476 0.090031221 0.021720218 6.26E-10 9.203149261 0.40508616 EEGASPLDFD ddPTM_HeLa_CUDC101_4h_R1 2 EEGASPLDFD 10 0 I3L0N3;P46459 I3L0N3 NSF Vesicle-fusing ATPase 0 0 ; ; 124.08 0.021271 40387000 19623.1 16575.8 16384.4 15799.3 17885.7 16470.1 16756 16109.6 18426.1 17999.7 FALSE FALSE TRUE 17322.90996 17086.48075 17270.19022 16443.66374 16566.30754 16155.96028 17402.28453 17943.45175 17666.56836 17892.63698 0.968158577 0.954944806 0.965212128 0.919018463 0.925872892 0.90293903 0.972594735 1.002839982 0.987365271 1 14.1270784 -7.933493792 0.688336295 0.995791262 0.944910813 0.294394562 0.027299488 0.524064013 0.555254757 0.010576131 0.007720983 1.17E-08 7.933493792 -0.050880449 EEGDLGPVYGFQWR ddPTM_HeLa_CUDC101_4h_R1 2 EEGDLGPVYGFQWR 14 0 P04818-2;P04818 P04818-2 TYMS Thymidylate synthase 0 0 ; ; 123.67 0.0068727 24775000 11019.3 8704.88 9114.08 9409 9279.75 9455.36 9436.4 7934.08 10443.5 10649.48 FALSE FALSE TRUE 9727.634358 8973.067035 9606.814733 9792.739689 8595.20133 9275.014762 9800.365109 8837.263597 10013.01451 10586.13642 0.918903174 0.847624353 0.907490169 0.92505323 0.811929961 0.876147292 0.925773551 0.83479593 0.945861088 1 13.36988853 -8.403037833 0.485201442 1.007329618 0.871411981 0.461311201 0.03960943 0.482837054 0.241168533 0.029107287 0.011809423 3.95E-09 8.403037833 -0.135917636 SSS(ph)PVTELAS(ph)RSPIR ddPTM_HeLa_CUDC101_4h_R1 1 SSSPVTELASRSPIR 15 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.013)S(0.016)S(0.971)PVTELAS(0.629)RS(0.37)PIR 117.3 0.0012976 16559000 3397.4 2919.2 3038.1 2834.4 3210.2 3337.3 2730 3056 3688.4 4367 TRUE FALSE FALSE 2999.161922 3009.137092 3202.348876 2949.999083 2973.389942 3273.646563 2835.297014 3403.882687 3536.362591 4341.02489 0.690887981 0.693185865 0.737694198 0.679562813 0.684951139 0.754118358 0.653140004 0.784119597 0.814637714 1 12.08381998 -9.202074366 0.73517892 1.020363168 0.705159584 0.51197546 0.067478395 0.175314795 0.154159099 0.033573415 0.007438498 6.28E-10 9.202074366 -0.315203584 EEGPAPCK(ac)QMK ddPTM_HeLa_CUDC101_4h_R1 2 EEGPAPCKQMK 11 1 D6RCB6;Q8IUF8-2;Q8IUF8-4;Q8IUF8 D6RCB6 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA 0 1 ; EEGPAPCK(1)QMK;EEGPAPCK(1)QMK 188.04 9.08E-06 4998500 3346.6 2955.2 2790 3502.5 2830.3 3259.3 2984.8 3186.2 1863.62 2014.77 FALSE TRUE FALSE 2954.316621 3046.246209 2940.835839 3645.347089 2621.514408 3197.134283 3099.924736 3548.904129 1786.800795 2002.786058 1.475103448 1.521004301 1.468372434 1.820138039 1.308933821 1.596343388 1.547806229 1.771983639 0.892157596 1 10.9677926 -9.327570313 0.345073415 0.761014598 1.62175244 0.769713793 0.13660125 1.168419481 0.176554124 0.390927958 0.056485064 4.70E-10 9.327570313 0.860737843 GTEPS(ph)PGGT(ph)PQPS(ph)RPVSPAGPPEGVPEEAQPPR ddPTM_HeLa_CUDC101_4h_R1 1 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 3 0 GT(0.009)EPS(0.991)PGGT(0.997)PQPS(0.954)RPVS(0.049)PAGPPEGVPEEAQPPR 79.407 6.07E-06 21050000 738.84 632.9 531.93 663.18 594.26 715.85 719.06 775.33 927.65 836.56 TRUE FALSE FALSE 652.2342952 652.3988988 560.6877448 690.2273469 550.4226237 702.1963539 746.7943851 863.5904332 889.4118744 831.5841039 0.784327517 0.784525457 0.674240575 0.83001508 0.661896519 0.844408101 0.898038312 1.038488385 1.069539293 1 9.699718371 -9.201504134 0.940594451 1.000046389 0.807898591 0.397140741 0.105065613 0.544068272 0.864999909 0.07024087 0.019710103 6.29E-10 9.201504134 -0.192147799 LETVVCTGS(ph)VPVDK ddPTM_HeLa_CUDC101_4h_R1 1 LETVVCTGSVPVDK 14 0 A0A087WX11;J3KNG8;Q8TF40-3;Q8TF40 A0A087WX11 FNIP1 Folliculin-interacting protein 1 1 0 LETVVCT(0.006)GS(0.994)VPVDK 148.7 0.00027322 11014000 3802.4 2775.1 3203.9 3674.4 4039.8 3633.2 3053.9 2231 2528.1 808.06 TRUE FALSE FALSE 3356.688436 2860.597542 3377.112525 3824.257914 3741.792002 3563.902763 3171.689946 2484.968022 2423.890648 803.2536232 4.17886498 3.561263167 4.20429168 4.760959433 4.658294584 4.436833723 3.948553551 3.093628152 3.017590681 1 9.649711773 -9.201308785 0.618415278 0.60425352 4.205278584 0.466638447 0.775406973 0.296461473 0.171743055 0.593268935 0.113478032 6.29E-10 9.201308785 3.601025063 TVDSQGPTPVCT(ph)PTFLER ddPTM_HeLa_CUDC101_4h_R1 2 TVDSQGPTPVCTPTFLER 18 0 H7BZL0;Q9BYG3;C9J808 H7BZL0 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 TVDSQGPT(0.16)PVCT(0.766)PT(0.074)FLER;TVDSQGPT(0.018)PVCT(0.873)PT(0.109)FLER ; 145.48 8.96E-06 11845000 2263.42 2010.63 1882.33 1793.2 2304.9 1835.87 1750.5 1537.36 2408.18 1258.39 TRUE FALSE FALSE 1998.105339 2072.575127 1984.094454 1866.334447 2134.872119 1800.853839 1818.017371 1712.366848 2308.913801 1250.90504 1.597327754 1.656860481 1.586127156 1.491987311 1.706662017 1.439640724 1.453361616 1.368902349 1.845794626 1 10.28875656 -9.20117277 0.874266054 0.9895203 1.542459129 0 0.278122817 0.216336856 0.28920832 0.078274162 0.0204806 6.29E-10 9.20117277 0.552938829 EEHGGLIR ddPTM_HeLa_CUDC101_4h_R1 2 EEHGGLIR 8 0 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 0 0 ; ; 107.01 0.012 9893700 7732.4 4220.7 7186.6 7372 5486.6 4853.7 5939.9 3662.6 7166.6 8511.8 FALSE FALSE TRUE 6826.019794 4350.734764 7575.129334 7672.662025 5081.864449 4761.123759 6169.003933 4079.535579 6871.189715 8461.171435 0.806746423 0.514200049 0.895281391 0.906808482 0.600610032 0.56270267 0.729095726 0.482147846 0.812084918 1 13.0466417 -8.32872641 0.065517652 1.712028204 1.23E-09 0.326952713 0.141343548 24.89797661 0.751913097 11.06012997 8.339492 4.69E-09 8.32872641 -1.712028203 ESS(ph)PIPSPTSDR ddPTM_HeLa_CUDC101_4h_R1 1 ESSPIPSPTSDR 12 0 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 ES(0.114)S(0.883)PIPS(0.002)PTSDR 103.43 0.0087751 12763000 2288.8 1721.9 2166.9 2021.8 1990.1 2334.6 1970 2106 1823 2634.7 TRUE FALSE FALSE 2020.510334 1774.949698 2284.049169 2104.257743 1843.294288 2290.071395 2045.98356 2345.738527 1747.855168 2619.028687 0.771473159 0.677712965 0.872097805 0.803449673 0.703808361 0.874397217 0.78119937 0.895652094 0.667367707 1 11.35481615 -9.20089628 0.924929377 1.001003271 0.795062109 0 0.122353829 0.327180226 0.500089711 0.045000621 0.012435773 6.30E-10 9.20089628 -0.205941162 EEHLCTQR ddPTM_HeLa_CUDC101_4h_R1 2 EEHLCTQR 8 0 J3KN67;P06753-7;P06753-2;A0A087WWU8;P06753-5 J3KN67;P06753-2 TPM3 Tropomyosin alpha-3 chain 0 0 ; ; 158.07 0.0012057 21293000 13249.2 6072 12636.7 12711.1 8292.1 8545.2 9384 4540 11811.1 5626.2 FALSE FALSE TRUE 11696.14886 6259.071123 13319.87823 13229.5136 7680.408303 8382.214547 9745.944023 5056.815249 11324.24146 5592.735112 2.091311072 1.119143138 2.381639387 2.365481886 1.373283045 1.498768381 1.742607835 0.904175711 2.024812767 1 12.44933829 -4.254712437 23.71137518 1.613744772 0.904175022 0.178207584 0.475476382 619.3236349 2182889.447 0.074721865 0.941488376 5.56E-05 4.254712437 -0.70956975 EEIDHAEYYLYK ddPTM_HeLa_CUDC101_4h_R1 1 EEIDHAEYYLYK 12 0 E5RJ73;D6RJC7;D6RH20;G5EA06;Q92552;Q92552-2 E5RJ73 MRPS27 "28S ribosomal protein S27, mitochondrial" 0 0 99.752 0.010939 8515600 5365.2 4771.1 3755.9 4309.5 4951.4 4838.3 3745.6 3490.7 4356.5 4730.4 FALSE FALSE TRUE 4736.299389 4918.091936 3958.955315 4485.260037 4586.145087 4746.017489 3890.069047 3888.067178 4176.923226 4702.26337 1.00723822 1.045898868 0.841925474 0.953851302 0.975305874 1.009304906 0.827275876 0.826850151 0.888279302 1 12.19913963 -2.436966831 0.4149358 1.001807015 8.66E-11 0.254120754 0.068724717 12.51363313 0.448792841 0.013806411 8.66339658 0.003656227 2.436966831 -1.001807015 LS(ph)LPADIR ddPTM_HeLa_CUDC101_4h_R1 1 LSLPADIR 8 0 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;E5RIY8;H0YBX5;E5RIU4;F8VZY6;F8VQZ9;F5H6Z0;Q00537-2;Q00537 E5RJM2;F5H6Z0 CDK16;CDK17 Cyclin-dependent kinase 16;Cyclin-dependent kinase 17 1 0 LS(1)LPADIR 106.88 0.013037 3943400 4325.1 3588.2 4207.7 3690.7 4456.2 4758.4 3893.6 2497.2 4438.4 8961.1 TRUE FALSE FALSE 3818.118334 3698.748189 4435.18099 3841.222699 4127.475004 4667.641448 4043.777456 2781.471154 4255.447273 8907.798979 0.428626459 0.415225826 0.497898639 0.431220182 0.463355203 0.523994924 0.453959218 0.312251226 0.477721521 1 13.12085329 -9.20019895 0.674694894 1.053872094 0.438046399 0.062791492 0.169568295 0.169921745 0.121454987 0.060897494 0.012526413 6.31E-10 9.20019895 -0.615825694 EEILSVAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EEILSVAKK 9 1 F6XU50;A0A0B4J1V9;Q9NRZ9-6;Q9NRZ9-5;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9;Q9NRZ9-4;B1ALG6;Q9NRZ9-8;Q9NRZ9-7 F6XU50 HELLS Lymphoid-specific helicase 0 1 ; EEILSVAK(1)K;EEILSVAK(1)K 159.37 0.00188 1740080 1186.84 957.08 1162.39 1184.49 1184.49 1405.95 1307.46 1050.63 927.6 921.98 FALSE TRUE FALSE 1047.720414 986.5665004 1225.232319 1232.798622 1097.112533 1379.133846 1357.88917 1170.229472 889.3639354 916.496022 1.143180537 1.076454755 1.336865944 1.345121629 1.19707288 1.504789779 1.481609453 1.276851666 0.970395849 1 9.839984809 -6.705957804 0.462874105 1.020281423 1.43803141 0.712732208 0.09558874 0.39839549 0.187587917 0.033603675 0.065231788 1.97E-07 6.705957804 0.417749987 EEIQDEEDDDDYVEEGEEEEEEEEGGLRGEKR ddPTM_HeLa_CUDC101_4h_R1 1 EEIQDEEDDDDYVEEGEEEEEEEEGGLRGEKR 32 2 Q5TB25;Q9BTT0-2;Q9BTT0;Q9BTT0-3 Q5TB25 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E 0 0 114.84 3.52E-12 19692000 2140.3 1907.6 1917.3 1945.7 1742.1 1785.5 1976.7 2719.1 1628.9 544.59 FALSE FALSE TRUE 1889.417278 1966.370895 2020.955038 2025.054056 1613.588754 1751.444562 2052.941981 3028.631353 1561.756053 541.3507545 3.490190533 3.632341654 3.733171185 3.74074302 2.980671479 3.235323028 3.792258465 5.594582307 2.884924496 1 9.080419844 -9.35981397 0.384786108 4.61E-13 3.953754516 0.356088924 0.860028998 1.075110863 0.197294099 1.781702409 0.239497585 4.37E-10 9.35981397 3.953754516 DTSSDKDLDDALDKLS(ph)DSLGQR ddPTM_HeLa_CUDC101_4h_R1 1 DTSSDKDLDDALDKLSDSLGQR 22 2 E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 E7EVY3 CAST 1 0 DTSSDKDLDDALDKLS(0.89)DS(0.11)LGQR 47.088 0.026467 8259000 2166.5 2046.4 1687.4 1707.9 2050.7 1605.3 1960.5 2287.9 1875.7 2337.3 TRUE FALSE FALSE 1912.546154 2109.447158 1778.625948 1777.555544 1899.423947 1574.681577 2036.117142 2548.345288 1798.382852 2323.397636 0.823167815 0.907914825 0.765528001 0.765067295 0.817519962 0.677749496 0.876353281 1.096818405 0.774031455 1 11.18202037 -9.20015992 0.714600076 1.01272879 0.831040191 0 0.126309885 0.938257911 0.770831558 0.102109218 0.022099515 6.31E-10 9.20015992 -0.181688599 GLDIESYDS(ph)LERPLRK ddPTM_HeLa_CUDC101_4h_R1 2 GLDIESYDSLERPLRK 16 2 Q9H792 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 GLDIES(0.079)Y(0.005)DS(0.916)LERPLRK;GLDIES(0.02)Y(0.001)DS(0.98)LERPLRK ; 62.203 0.021813 59145000 12117.2 10652.1 9883.5 10124.1 12214.7 11069.8 9965.6 8456.9 11185.6 9883.6 TRUE FALSE FALSE 10696.84018 10980.27858 10417.83191 10537.00456 11313.64592 10858.66201 10349.97653 9419.599312 10724.52483 9824.811908 1.088757758 1.117607001 1.060359425 1.072489189 1.151538169 1.105228488 1.053452893 0.958756198 1.091575588 1 13.26221407 -9.199816983 0.927809405 0.999704941 1.079522848 0 0.055510736 0.624215458 0.961499513 0.03329706 0.00924182 6.31E-10 9.199816983 0.079817907 VGEDEDGS(ph)DEEVVHNEDIHFEPIVSLPEVEVK ddPTM_HeLa_CUDC101_4h_R1 3 VGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVK 32 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 VGEDEDGS(0.999)DEEVVHNEDIHFEPIVS(0.001)LPEVEVK;VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(0.986)DEEVVHNEDIHFEPIVS(0.014)LPEVEVK ;; 59.167 0.00094475 637734000 15377.5 13545.2 12699.6 12393.5 14299 15224.1 12381.7 11948.1 14909.7 15682.9 TRUE FALSE FALSE 13574.97276 13962.51156 13386.17879 12898.9605 13244.19126 14933.72566 12859.26632 13308.22341 14295.11586 15589.61741 0.870770103 0.895628878 0.858659865 0.827407123 0.849552039 0.957927655 0.82486093 0.853659397 0.916963866 1 13.9282979 -9.199466686 0.549987027 1.022395375 0.863333223 0.350309062 0.043959452 0.606389324 0.266619839 0.050134297 0.00886572 6.32E-10 9.199466686 -0.159062152 EEKEDEISLEDLIER ddPTM_HeLa_CUDC101_4h_R1 1 EEKEDEISLEDLIER 15 1 Q8WU90;Q8WU90-2 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 0 0 99.069 0.0077716 2657700 2159.3 1849.8 1997 2022.4 1813.8 1825.9 1637.3 1989.2 2276 1720.3 FALSE FALSE TRUE 1906.190127 1906.790145 2104.963861 2104.882214 1679.999588 1791.074 1700.451209 2215.642487 2182.182317 1710.067579 1.114687016 1.11503789 1.230924372 1.230876627 0.982417074 1.047370304 0.994376614 1.295646157 1.276079579 1 10.73983762 -8.937597516 0.828184358 1.002031932 1.12063535 0 0.129552088 0.848728879 1.094244394 0.058815526 0.020021138 1.15E-09 8.937597516 0.118603418 FAS(ph)ENDLPEWK ddPTM_HeLa_CUDC101_4h_R1 2 FASENDLPEWK 11 0 C9JJ34;P43487-2;P43487;F6WQW2;C9JXG8;C9JDM3;C9JGV6;C9JIC6 C9JJ34 RANBP1 Ran-specific GTPase-activating protein 1 0 FAS(1)ENDLPEWK;FAS(1)ENDLPEWK ; 188.48 5.97E-11 85145000 7282.8 7404 4223.5 5693.4 7889.8 6585.6 6154.5 4642 7067.3 8402.6 TRUE FALSE FALSE 6429.121224 7632.108464 4451.835185 5925.601461 7307.785173 6459.990652 6391.881127 5170.426516 6775.982903 8352.620962 0.769713034 0.913738155 0.532986617 0.709430188 0.87490923 0.773408812 0.765254542 0.619018454 0.81124032 1 13.02801326 -9.199209734 0.431779922 1.067812491 0.730308578 0.169472005 0.11828221 1.351789538 0.346080973 0.204561898 0.033080145 6.32E-10 9.199209734 -0.337503912 NGSLDS(ph)PGKQDTEEDEEEDEKDK ddPTM_HeLa_CUDC101_4h_R1 1 NGSLDSPGKQDTEEDEEEDEKDK 23 2 Q9Y266;A0A0A0MSU9;A0A0A0MSS4 Q9Y266 NUDC Nuclear migration protein nudC 1 0 NGS(0.019)LDS(0.521)PGKQDT(0.46)EEDEEEDEKDK 51.469 0.030787 4781900 817.55 612.3 858.69 777.76 557.13 811.47 737.17 714.37 864.78 1015.3 TRUE FALSE FALSE 721.7180283 631.1642372 905.1133788 809.4804146 516.0316299 795.9925618 765.6028938 795.6909932 829.1334024 1009.26095 0.715095564 0.625372692 0.896808084 0.802052645 0.511296538 0.788688556 0.758577743 0.788389755 0.821525297 1 9.979083525 -9.199192253 0.794762565 1.012220029 0.733516943 0.216029572 0.113504407 0.475265953 0.505539199 0.083312393 0.019938297 6.32E-10 9.199192253 -0.278703085 (ac)TTSGALFPSLVPGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 TTSGALFPSLVPGSR 15 0 Q16186;A0A087WX59;A0A087WUX6 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 1 0 TTSGALFPS(0.003)LVPGS(0.997)R 73.252 0.00021766 0 338.54 308.7 182.35 373.26 325.98 384.12 277.89 172.81 244.88 141.94 TRUE FALSE FALSE 298.8568544 318.2106811 192.2083926 388.4831562 301.9331048 376.793551 288.6083104 192.4819919 234.7859428 141.0957346 2.118114026 2.255282076 1.362255161 2.753330264 2.139916602 2.670481515 2.045478634 1.364194265 1.664018714 1 7.140530565 -9.198593709 0.615912907 0.858137299 2.134839349 0.237412805 0.478493894 0.709243245 0.40752783 0.501822924 0.096027355 6.33E-10 9.198593709 1.27670205 EELAEALK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EELAEALKK 9 1 A0A3B3IT92;P33991;A0A3B3IS57;A0A3B3IU45;E5RG31 A0A3B3IT92 MCM4 DNA replication licensing factor MCM4 0 1 ; EELAEALK(1)K;EELAEALK(1)K 129.38 0.0025253 586340 714.06 200.13 238.27 281.52 505.37 447.86 534.11 471.69 578.86 452.14 FALSE TRUE FALSE 630.3589692 206.2957681 251.1515969 293.0016024 468.0898619 439.3178167 554.7108016 525.385283 554.9991458 449.4506512 1.402509859 0.45899537 0.558796825 0.651910508 1.041471095 0.977455068 1.234197348 1.168949876 1.234838896 1 8.812018909 -7.288014751 24.99756905 1.190074088 0.874582953 0.270225034 0.256843699 906.8185701 852977.4561 0.051415284 0.058804235 5.15E-08 7.288014751 -0.315491136 LTCMQSCSAPVNAGPS(ph)SLASEPPGSPSTPR ddPTM_HeLa_CUDC101_4h_R1 1 LTCMQSCSAPVNAGPSSLASEPPGSPSTPR 30 0 Q96HA7-2;Q96HA7 Q96HA7-2 TONSL Tonsoku-like protein 1 0 LTCMQSCSAPVNAGPS(0.593)S(0.194)LAS(0.016)EPPGS(0.136)PS(0.046)T(0.016)PR 94.031 5.23E-09 6795100 288.49 299.01 234.73 44.003 269.6 288.15 248.25 260.06 208.96 60.338 TRUE FALSE FALSE 254.6736395 308.2221437 247.4202138 45.79763254 249.7121451 282.6540188 257.8250857 289.6641792 200.3465804 59.97910689 4.246039208 5.138825162 4.125106669 0.763559761 4.16331883 4.712541308 4.298581606 4.829418013 3.340272817 1 5.906388135 -9.19854391 0.822940137 0.89165055 4.009650239 0.150674397 1.349752943 0.482447401 0.558379588 0.960029851 0.237762199 6.33E-10 9.19854391 3.117999689 EELDEDFEQLCEEIQESR ddPTM_HeLa_CUDC101_4h_R1 1 EELDEDFEQLCEEIQESR 18 0 Q6PL18;A0A0B4J211 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 0 0 178.68 1.16E-16 0 349 355.99 0 272.45 244.93 205.57 185.58 297.17 349.15 144.69 FALSE FALSE TRUE 308.090749 366.9576299 0 283.5616886 226.8620019 201.6490948 192.7378828 330.9986316 334.7578892 143.8293774 2.142057169 2.551339903 0 1.971514399 1.577299477 1.402002138 1.340045311 2.301328404 2.327465328 1 7.168214569 -4.252289654 23.28966053 1.52642981 2.301329495 0.078268389 0.702077029 867.9560728 2209160.024 0.093745552 1.463667474 5.59E-05 4.252289654 0.774899685 EELDMDVMR ddPTM_HeLa_CUDC101_4h_R1 2 EELDMDVMR 9 0 E9PN09;Q6YBV0 E9PN09 SLC36A4 Proton-coupled amino acid transporter 4 0 0 ; ; 88.819 0.013382 7601000 5553.4 4682.1 4240.8 3611.9 4196.2 4692.7 4464.8 3438.9 5286.4 4788.3 FALSE FALSE TRUE 4902.43887 4826.349951 4470.070476 3759.208894 3886.654686 4603.194566 4637.008832 3830.370475 5068.492354 4759.818979 1.029963302 1.013977627 0.939126151 0.789779803 0.816555147 0.96709446 0.974198568 0.804730283 1.064849814 1 12.21669099 -6.590470243 4.015352494 1.014281049 0.877309165 0.588093006 0.061143215 0.130383443 4.219130742 0.009689189 0.014014872 2.57E-07 6.590470243 -0.136971883 VEKEEAGGGIS(ph)EEEAAQYDR ddPTM_HeLa_CUDC101_4h_R1 2 VEKEEAGGGISEEEAAQYDR 20 1 A0A590UK93;A0A590UKC5;B3KNJ4;Q9UBE0-2;Q9UBE0-3;Q9UBE0;M0R375;M0QZS6 A0A590UK93 SAE1 "SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed" 1 0 VEKEEAGGGIS(0.991)EEEAAQY(0.009)DR;VEKEEAGGGIS(1)EEEAAQYDR ; 90.1 0.0010871 11086500 1380.58 1341.92 1176.51 980.12 1441 1049.5 958.73 1134.96 1470.17 904.62 TRUE FALSE FALSE 1218.750505 1383.262965 1240.115689 1020.09353 1334.700301 1029.482536 995.7085373 1264.159259 1409.56897 899.23928 1.355312799 1.538259054 1.379071974 1.134396098 1.484254892 1.144837152 1.10727874 1.405809651 1.567512676 1 9.812561246 -9.198322692 0.99263781 1.004077639 1.313920318 0 0.223755075 0.423145587 0.763703038 0.089518599 0.026540289 6.33E-10 9.198322692 0.309842679 EELEFEVPFR ddPTM_HeLa_CUDC101_4h_R1 2 EELEFEVPFR 10 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 0 ; ; 136.99 0.0086915 17994700 4272.9 2707.5 2921.6 2967.4 2797.8 3028.2 2699 2411.3 3317.3 3086.7 FALSE FALSE TRUE 3772.037139 2790.914866 3079.550533 3088.423398 2591.411868 2970.44213 2803.101334 2685.792645 3180.55949 3068.340171 1.229341249 0.909584567 1.003653559 1.006545307 0.844564723 0.968094137 0.913556248 0.875324278 1.036573298 1 11.58324272 -7.239618774 24.7722714 1.108300037 0.934630083 0.477664908 0.074351077 508.8431654 577674.7165 0.015938891 0.019511961 5.76E-08 7.239618774 -0.173669954 EELGLIEQAYDNPHEALSR ddPTM_HeLa_CUDC101_4h_R1 2 EELGLIEQAYDNPHEALSR 19 0 Q6P2Q9;I3L0J9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 ; ; 181.86 2.89E-11 10522200 2900.3 2225.13 2364.78 2073.48 2639.2 2694.7 2238.18 1894.5 2521.1 2171.63 FALSE FALSE TRUE 2560.331231 2293.683618 2492.62716 2158.045477 2444.511474 2643.303087 2324.507352 2110.162222 2417.179191 2158.713048 1.186045191 1.062523627 1.154682028 0.999690755 1.132392967 1.224480989 1.076802382 0.977509366 1.119731589 1 11.07595577 -9.606974197 1.420783616 1.00023415 1.114832753 0 0.082669337 0.491017161 1.784773418 0.052971854 0.012314775 2.47E-10 9.606974197 0.114598603 LCAGIMITAS(ph)HNPK ddPTM_HeLa_CUDC101_4h_R1 2 LCAGIMITASHNPK 14 0 Q96G03-2;Q96G03 Q96G03-2 PGM2 Phosphoglucomutase-2 1 0 LCAGIMITAS(1)HNPK;LCAGIMIT(0.01)AS(0.99)HNPK ; 97.291 0.0058855 154557000 8093.7 7144.6 7278 6580.1 7957.1 7739.2 7314.6 7058.3 6973.3 4642.4 TRUE FALSE FALSE 7144.968755 7364.716658 7671.470695 6848.46492 7370.120586 7591.587654 7596.726572 7861.788341 6685.857622 4614.786798 1.548277107 1.595895321 1.662367305 1.484026287 1.597066324 1.645057071 1.646170648 1.703608137 1.448790142 1 12.17204828 -9.198196769 0.448979684 0.844567051 1.643910667 0.400595883 0.149541132 0.28282845 0.078801607 0.103877325 0.016924944 6.34E-10 9.198196769 0.799343616 LAS(ph)PMKPVPGTPPSSK ddPTM_HeLa_CUDC101_4h_R1 2 LASPMKPVPGTPPSSK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 LAS(0.999)PMKPVPGT(0.001)PPSSK;LAS(1)PMKPVPGTPPSSK ; 93.029 0.0038957 101757000 4284.5 3840.7 3451.9 3288.5 3511.1 4033.2 3735.7 4706.1 4068.6 4540.2 TRUE FALSE FALSE 3782.277405 3959.027415 3638.520155 3422.619244 3252.093148 3956.27343 3879.7872 5241.823401 3900.890586 4513.194688 0.838048803 0.877211751 0.806196144 0.758358431 0.720574531 0.876601543 0.859654295 1.161444113 0.864330226 1 12.1399333 -9.197434611 0.859491601 1.003281726 0.852503831 0 0.119233317 0.855763461 1.099962155 0.083765457 0.021664906 6.35E-10 9.197434611 -0.150777895 GADS(ph)GEEKEEGINREDK ddPTM_HeLa_CUDC101_4h_R1 2 GADSGEEKEEGINREDK 17 2 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 0 GADS(1)GEEKEEGINREDK;GADS(1)GEEKEEGINREDK ; 82.765 0.0088987 192274000 4813.2 3672.9 4605.2 4375.5 4252 3924.5 4135.4 3799 4385.6 5605.3 TRUE FALSE FALSE 4249.003992 3786.057696 4854.171042 4553.951803 3938.338431 3849.646701 4294.903763 4231.462804 4204.823712 5571.959426 0.762569083 0.679484075 0.871178462 0.817298091 0.70681391 0.690896399 0.770806719 0.759420965 0.754640045 1 12.44396904 -9.196914253 0.585647228 1.035782572 0.75178022 0 0.093967281 0.480561512 0.245204426 0.073520326 0.013588299 6.35E-10 9.196914253 -0.284002352 T(ph)TPDQELVPASEPVWERPWSVEEIR ddPTM_HeLa_CUDC101_4h_R1 2 TTPDQELVPASEPVWERPWSVEEIR 25 1 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 A0A0A0MR88 FAM21C WASH complex subunit FAM21C 1 0 T(0.5)T(0.5)PDQELVPASEPVWERPWSVEEIR;T(0.747)T(0.253)PDQELVPASEPVWERPWSVEEIR ; 77.63 0.00023 25588000 693.47 570.24 586.55 590.03 591.67 494.44 391.56 629.35 761.06 779.78 TRUE FALSE FALSE 612.1824978 587.8084185 618.2606672 614.0939737 548.0236829 485.0093808 406.6626004 700.9926601 729.6887847 775.1418339 0.789768364 0.758323694 0.797609728 0.792234333 0.706997944 0.625704045 0.524629923 0.904341153 0.941361636 1 9.598316506 -9.19642397 0.238634086 1.162611744 0.654252289 0.501455063 0.096064364 3.01372272 0.258995371 0.470359822 0.099684892 6.36E-10 9.19642397 -0.508359455 QYAMQRPNDDS(ph)LAFLDKIKS(ph)VK ddPTM_HeLa_CUDC101_4h_R1 1 QYAMQRPNDDSLAFLDKIKSVK 22 3 A1A4Z1;Q8NA54-2;Q8NA54 A1A4Z1 IQUB IQ and ubiquitin-like domain-containing protein 2 0 QYAMQRPNDDS(1)LAFLDKIKS(1)VK 44.089 0.030189 19227000 1744.3 1582.1 1366.7 1366.2 1781.4 1765.5 1414.1 1573.9 1525.9 2046.5 TRUE FALSE FALSE 1539.835798 1630.842626 1440.587936 1421.919541 1649.989671 1731.826029 1468.642311 1753.066414 1463.001756 2034.327327 0.756926271 0.801661859 0.708139697 0.698963005 0.811073837 0.851301561 0.721930189 0.861742548 0.719157501 1 10.99033611 -9.195776505 0.788496019 1.010509159 0.772792392 0 0.101644308 0.305073491 0.318846571 0.045408292 0.010834043 6.37E-10 9.195776505 -0.237716767 DNLTLWTSDS(ph)AGEECDAAEGAEN ddPTM_HeLa_CUDC101_4h_R1 2 DNLTLWTSDSAGEECDAAEGAEN 23 0 P27348 P27348 YWHAQ 14-3-3 protein theta 1 0 DNLTLWT(0.002)S(0.04)DS(0.958)AGEECDAAEGAEN;DNLT(0.001)LWT(0.04)S(0.281)DS(0.679)AGEECDAAEGAEN ; 117.83 5.31E-07 5078700 4549.5 3925.3 3593.9 3862.2 4784.3 3523.5 3635 3752.7 4582.1 2924.6 TRUE FALSE FALSE 4016.214507 4046.23384 3788.197105 4019.71721 4431.371721 3456.295108 3775.203168 4179.892199 4393.223899 2907.204349 1.381469627 1.391795469 1.303037781 1.382674462 1.524272527 1.188872433 1.298568217 1.437770345 1.511150704 1 11.50541677 -9.195209293 0.746128508 0.977131906 1.363425487 0 0.179183509 0.327037132 0.299081868 0.077142755 0.01748538 6.38E-10 9.195209293 0.386293581 SHVEDGDIAGAPAS(ph)SPEAPPAEQDPVQLK ddPTM_HeLa_CUDC101_4h_R1 2 SHVEDGDIAGAPASSPEAPPAEQDPVQLK 29 0 A0A087WVV2;Q9P2E9-3;Q9P2E9;A0A087WU26;F8W7S5 A0A087WVV2 RRBP1 Ribosome-binding protein 1 1 0 SHVEDGDIAGAPAS(0.5)S(0.5)PEAPPAEQDPVQLK;SHVEDGDIAGAPAS(0.5)S(0.5)PEAPPAEQDPVQLK ; 90.742 1.82E-07 142772000 5108.2 4430.4 3951.8 4217.4 4817.4 4947.6 4637.9 4707.6 4867.7 5569.5 TRUE FALSE FALSE 4509.42454 4566.895373 4165.446262 4389.403801 4462.03 4853.232773 4816.785357 5243.494155 4667.051346 5536.372366 0.814508895 0.824889489 0.75237827 0.792830307 0.805948319 0.876608807 0.87002554 0.947099257 0.84298003 1 12.43472526 -9.194996208 0.895562692 1.00190133 0.83224499 0.03089995 0.069359502 0.34696759 0.492381423 0.038776018 0.010467735 6.38E-10 9.194996208 -0.16965634 EHCDT(ph)EGEADDFDPGKK ddPTM_HeLa_CUDC101_4h_R1 1 EHCDTEGEADDFDPGKK 17 1 Q9H8M2 Q9H8M2 BRD9 Bromodomain-containing protein 9 1 0 EHCDT(1)EGEADDFDPGKK 75.682 0.014617 7487900 6950 5838.4 6324 5824.2 6697.8 6610.4 6049.8 6004.8 6539.4 3708.8 TRUE FALSE FALSE 6135.331536 6018.274184 6665.894569 6061.73605 6203.716638 6484.317634 6283.142813 6688.36216 6269.843164 3686.739893 1.664161756 1.632410845 1.808072922 1.644199544 1.682710693 1.758821567 1.704254435 1.814167084 1.700647007 1 11.84812992 -9.193815268 0.491110513 0.84763502 1.743808583 0 0.224860159 0.19799557 0.067415966 0.086137734 0.01449549 6.40E-10 9.193815268 0.896173563 METVSNASSSS(ph)NPSS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 2 METVSNASSSSNPSSPGR 18 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 0 METVSNASS(0.001)S(0.078)S(0.921)NPS(0.29)S(0.71)PGR;METVSNASSS(0.008)S(0.991)NPS(0.102)S(0.898)PGR ; 180.32 1.34E-07 54761000 12591.6 11093.4 10378.6 10332.1 12060.5 12194.6 10947.1 9385.5 11609.7 13374.9 TRUE FALSE FALSE 11115.63174 11435.17451 10939.69851 10753.4877 11170.82094 11962.00832 11369.33331 10453.90738 11131.14325 13295.3455 0.836054372 0.860088555 0.822821679 0.808815965 0.840205389 0.899713988 0.855136357 0.786283243 0.83722106 1 13.69863365 -9.193730699 0.665573108 1.015846951 0.838024232 0 0.057880354 0.311986996 0.216530693 0.03201299 0.006564283 6.40E-10 9.193730699 -0.177822718 Y(ph)FRS(ph)S(ph)KFR ddPTM_HeLa_CUDC101_4h_R1 1 YFRSSKFR 8 2 E9PS66 E9PS66 ZFP69B 3 0 Y(1)FRS(1)S(1)KFR 60.102 0.038458 7621300 278.92 458.82 304.94 349.37 439.32 501.18 461.2 152.94 452.23 5780.5 TRUE FALSE FALSE 246.2254204 472.9557004 321.4259788 363.6188187 406.9122388 491.6208265 478.9886385 170.3500714 433.588888 5746.117329 0.042850747 0.082308744 0.055937942 0.063280786 0.070815164 0.085557046 0.08335866 0.029646118 0.075457716 1 12.48837174 -9.193378972 0.665403341 1.093113346 0.052392204 0 0.285718727 0.074063819 0.051381079 0.044468385 0.009120496 6.41E-10 9.193378972 -1.040721142 LQYKT(ph)PPPSYNSALAQPVTTVPSMGETER ddPTM_HeLa_CUDC101_4h_R1 2 LQYKTPPPSYNSALAQPVTTVPSMGETER 29 1 E9PR71;Q9P2Y5-2;Q9P2Y5 E9PR71 UVRAG UV radiation resistance-associated gene protein 1 0 LQY(0.412)KT(0.455)PPPS(0.061)Y(0.055)NS(0.017)ALAQPVTTVPSMGETER;LQY(0.088)KT(0.379)PPPS(0.231)Y(0.199)NS(0.102)ALAQPVTTVPSMGETER ; 70.647 8.25E-05 55809000 5507.9 4874.2 4621.2 4374 5092.6 4639.7 5005.3 5164.4 5099.5 5695.2 TRUE FALSE FALSE 4862.272311 5024.368325 4871.03605 4552.390626 4716.929044 4551.205453 5198.356098 5752.294421 4889.296452 5661.324697 0.858857701 0.887489871 0.860405702 0.804121097 0.833184687 0.803911751 0.918222567 1.016068629 0.863631166 1 12.46692395 -9.193283739 0.775105634 1.006663479 0.867446134 0 0.071969138 0.60449762 0.606838864 0.052257792 0.012307475 6.41E-10 9.193283739 -0.139217345 EEMVLSGK(ac)YK ddPTM_HeLa_CUDC101_4h_R1 2 EEMVLSGKYK 10 1 F8VSD1;G3V1Y1;F8W057;Q9GZN1 F8VSD1 ACTR6 Actin-related protein 6 0 1 ; EEMVLSGK(1)YK;EEMVLSGK(1)YK 139.43 0.00093406 1516920 1429.14 1245.88 1045.14 1160.5 1401.72 1082.39 1159.92 1378.16 876.15 751.4 FALSE TRUE FALSE 1261.618376 1284.264086 1101.64343 1207.830206 1298.317908 1061.745214 1204.658503 1535.044164 840.0347262 746.9306394 1.689070322 1.71938868 1.474893881 1.617058054 1.738204111 1.421477656 1.612811738 2.055136157 1.124648906 1 9.544830469 -9.267211625 0.662885129 0.920241334 1.662728367 0.674713963 0.166517085 0.428856974 0.283102872 0.186359817 0.034522253 5.40E-10 9.267211625 0.742487033 EENEGVYNGSWGGR ddPTM_HeLa_CUDC101_4h_R1 2 EENEGVYNGSWGGR 14 0 P49419;A0A1B0GUY0;A0A1B0GW82;A0A1B0GTG2;A0A1B0GUA1;A0A1B0GTJ4;A0A1B0GTY9;A0A1B0GV49;A0A0J9YWF7;H0YHM6;A0A1B0GW77;P49419-4;P49419-2;F8VVF2;F8WDY6;A0A0J9YWM6;F8WD33;A0A1B0GW65;A0A0J9YWK1 P49419 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase 0 0 ; ; 217.12 7.91E-24 18644600 1865.63 1728.52 1317.29 1586.6 1594.03 1419.09 1168.81 1280.13 1575.69 1669.12 FALSE FALSE TRUE 1646.94368 1781.773652 1388.506682 1651.308406 1476.441583 1392.023223 1213.891393 1425.854825 1510.739391 1659.192 0.9926179 1.07388033 0.836857146 0.995248534 0.889855775 0.838976576 0.731615987 0.859366984 0.910527167 1 10.69626513 -5.58365777 0.870033725 0.998249012 0.781470745 0.499626893 0.068637122 0.309137786 0.414475225 0.009894391 0.041370977 2.61E-06 5.58365777 -0.216778267 ADTGHAFLAK(ac)PPAR ddPTM_HeLa_CUDC101_4h_R1 2 ADTGHAFLAKPPAR 14 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;Q9Y618-2 Q9Y618 NCOR2 Nuclear receptor corepressor 2 0 1 ; ADTGHAFLAK(1)PPAR;ADTGHAFLAK(1)PPAR 112.44 0.0071787 7171000 4578.6 4273 4410.1 5108.2 5177.3 5564.3 5848.5 5275.3 3780.78 2952.93 FALSE TRUE FALSE 4041.903449 4404.646065 4648.523346 5316.534476 4795.380894 5458.170248 6074.078604 5875.818829 3624.934648 2935.365841 1.376967529 1.500544158 1.583626572 1.811199954 1.63365698 1.859451443 2.069274814 2.001733054 1.234917501 1 11.51932461 -5.499631301 0.15612779 0.707144329 2.853596471 0.90221305 0.101200902 1.633378878 0.074494177 0.249604833 0.828753373 3.16E-06 5.499631301 2.146452142 up TSVSQNVIPSS(ph)AQK ddPTM_HeLa_CUDC101_4h_R1 2 TSVSQNVIPSSAQK 14 0 H0Y8J2;Q03188;Q03188-2 H0Y8J2 CENPC Centromere protein C 1 0 TSVSQNVIPS(0.078)S(0.922)AQK;TSVSQNVIPS(0.078)S(0.922)AQK ; 246.75 7.48E-56 30234000 11357.1 9288.1 10200 8936.3 10313.6 9726.9 9067.5 9121.2 10442 11732.8 TRUE FALSE FALSE 10025.83795 9574.255352 10751.44285 9300.76094 9552.786276 9541.375589 9417.236512 10159.52054 10011.57634 11663.01278 0.859626765 0.820907559 0.921840956 0.797457836 0.819066776 0.81808841 0.807444585 0.871088862 0.858403958 1 13.50965289 -9.193115467 0.389747226 1.051550426 0.82351023 0.115348063 0.05573629 0.781099166 0.162112703 0.074810418 0.012177484 6.41E-10 9.193115467 -0.228040196 DELADEIANS(ph)SGKGALALEEK ddPTM_HeLa_CUDC101_4h_R1 1 DELADEIANSSGKGALALEEK 21 1 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 DELADEIANS(0.5)S(0.5)GKGALALEEK 56.055 0.013847 15714000 942.47 745.21 821.32 751.51 795.13 995.7 1000.3 835.66 1159.4 1180.2 TRUE FALSE FALSE 831.9950953 768.1690368 865.7230436 782.1598261 736.474844 976.7086814 1038.881906 930.7881565 1111.609041 1173.180118 0.709179335 0.654775021 0.737928499 0.666700547 0.627759398 0.832530885 0.885526349 0.793388962 0.947517797 1 10.19620881 -9.193090216 0.911761313 1.001736875 0.737518964 0.586696123 0.078398429 0.339317505 0.502769358 0.059394097 0.016352385 6.41E-10 9.193090216 -0.26421791 GS(ph)PTGGAQLLKR ddPTM_HeLa_CUDC101_4h_R1 2 GSPTGGAQLLKR 12 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 GS(0.997)PT(0.003)GGAQLLKR;GS(0.939)PT(0.061)GGAQLLKR ; 127.71 0.0042217 48770000 3035.8 2600.7 2340.4 2547.4 3371.2 2839.7 2486.6 1745.48 3169.8 1830.37 TRUE FALSE FALSE 2679.948126 2680.824484 2466.929103 2651.293983 3122.513292 2785.537454 2582.508995 1944.178388 3039.139502 1819.482878 1.472917475 1.473399127 1.35584079 1.457168965 1.71615426 1.530950078 1.419364275 1.068533489 1.670331466 1 10.82931276 -9.192839856 0.739093858 0.970661637 1.451876133 0 0.257814026 0.489965948 0.438416092 0.14324414 0.032284586 6.41E-10 9.192839856 0.481214496 EENTSNESTDVTK(ac)GDSK(ac)NAK ddPTM_HeLa_CUDC101_4h_R1 1 EENTSNESTDVTKGDSKNAK 20 2 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 2 EENTSNESTDVTK(1)GDSK(1)NAK 222.93 7.36E-37 15131000 2131.5 1662.7 1408 1508.8 1391.3 1403.9 1174.6 1178.7 1809.2 1780.4 FALSE TRUE FALSE 1881.648801 1713.925816 1484.120739 1570.335386 1288.666571 1377.122947 1219.904715 1312.878444 1734.62401 1769.810102 1.063192486 0.96842357 0.838576262 0.887290328 0.728138329 0.778119045 0.689285655 0.741818821 0.980118719 1 10.78937885 -6.377695596 0.996394178 1.031181098 0.727743182 0.86858194 0.045120584 0.111524749 0.220037856 0.008257057 0.016288508 4.19E-07 6.377695596 -0.303437916 EENTSNESTDVTK(ac)GDSK(ac)NAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EENTSNESTDVTKGDSKNAKK 21 3 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 3 ; EENTSNESTDVTK(1)GDSK(1)NAK(1)K;EENTSNESTDVTK(1)GDSK(1)NAK(1)K 225.39 4.98E-49 14089500 5110.9 4360.6 4411.7 3854.5 3816.7 4559.7 4153.4 3807.3 3047.9 2755.6 FALSE TRUE FALSE 4511.80805 4494.944917 4650.209847 4011.703171 3535.149645 4472.731319 4313.598029 4240.707642 2922.264272 2739.209569 1.647120433 1.640964229 1.697646613 1.464547735 1.290572903 1.632854737 1.574760135 1.548150127 1.066827564 1 11.41954393 -9.258463077 0.913012536 0.988435024 1.563129943 0.778018642 0.112468922 0.23132357 0.33536396 0.090371148 0.022855758 5.51E-10 9.258463077 0.574694919 ELVSSSSSGS(ph)DSDSEVDKK ddPTM_HeLa_CUDC101_4h_R1 1 ELVSSSSSGSDSDSEVDKK 19 1 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 ELVS(0.003)S(0.011)S(0.046)S(0.121)S(0.121)GS(0.474)DS(0.22)DS(0.004)EVDKK 70.452 0.0071915 283450000 2324.2 1739.6 1957.7 1553.1 1639 1112.2 1072.4 767.59 1816.6 1865 TRUE FALSE FALSE 2051.760799 1793.195014 2063.539184 1616.442131 1518.094235 1090.986638 1113.762827 854.9693429 1741.718979 1853.906897 1.106722674 0.967251925 1.113075952 0.87191117 0.818862176 0.588479734 0.600765243 0.461171672 0.939485679 1 10.85635308 -5.484272536 1.086328731 1.050433212 0.499130845 0.9021773 0.067256733 0.097854109 0.212264306 0.009631572 0.037175841 3.28E-06 5.484272536 -0.551302367 EEPCLLK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 EEPCLLKR 8 1 P21333-2;P21333;Q60FE5;H0Y5F3;H7C2E7 P21333-2 FLNA Filamin-A 0 1 EEPCLLK(1)R 95.909 0.019615 3798800 2421.9 919.31 982.98 1036 2310.4 2069.7 2252.6 2135.9 1676.7 1209.5 FALSE TRUE FALSE 2138.008553 947.6328514 1036.122872 1078.252558 2139.966395 2030.223921 2339.483537 2379.042222 1607.585716 1202.30584 1.778256814 0.788179529 0.861779788 0.896820528 1.77988522 1.688608549 1.945830635 1.978732984 1.337085509 1 10.23158822 -5.640938904 7.407591364 1.256689584 1.854219297 0.567441853 0.300270395 0.202045448 12.31586176 0.057875069 0.116097082 2.29E-06 5.640938904 0.597529713 SLTEISTDFDRS(ph)SPPLQPPPVNSLTTENR ddPTM_HeLa_CUDC101_4h_R1 1 SLTEISTDFDRSSPPLQPPPVNSLTTENR 29 1 J3KRR7;Q9NQC7-2;Q9NQC7 J3KRR7 CYLD Ubiquitin carboxyl-terminal hydrolase CYLD 1 0 SLTEIS(0.006)T(0.006)DFDRS(0.58)S(0.408)PPLQPPPVNSLTTENR 73.058 3.04E-05 66373000 1100.8 795.91 1003.7 968.45 1159.8 1117 979.74 943.49 975.5 1386.2 TRUE FALSE FALSE 971.7658927 820.4310437 1057.963058 1007.947577 1074.243865 1095.695086 1017.5289 1050.893088 935.2894771 1377.954821 0.705223334 0.595397637 0.767777754 0.73148086 0.779592951 0.795160385 0.738434152 0.762646984 0.678751918 1 10.42831287 -9.192663556 0.928096802 1.00061308 0.734684429 0 0.111140135 0.22203779 0.343122292 0.039352525 0.011026364 6.42E-10 9.192663556 -0.26592865 LLASQGSQGAPLLS(ph)TPKR ddPTM_HeLa_CUDC101_4h_R1 1 LLASQGSQGAPLLSTPKR 18 1 H3BRB3;Q14807-2;Q14807 H3BRB3 KIF22 Kinesin-like protein;Kinesin-like protein KIF22 1 0 LLASQGSQGAPLLS(0.5)T(0.5)PKR 87.793 0.0032456 27020000 1530.2 1190 1378 1253.7 2028 1545.1 1306.7 828.61 1433.7 1886.7 TRUE FALSE FALSE 1350.832276 1226.66249 1452.498848 1304.831305 1878.39848 1515.629792 1357.099857 922.935613 1374.602279 1875.477824 0.720260329 0.654053316 0.774468687 0.695732729 1.001557286 0.808129945 0.723602188 0.492106919 0.732934435 1 10.87304249 -9.191525056 0.843615445 1.007047102 0.74173581 0 0.145725204 0.551717147 0.679812063 0.0941372 0.024098391 6.43E-10 9.191525056 -0.265311292 ATSACAPISS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 ATSACAPISSPK 12 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3;H7C211 A0A087X1U1 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" 1 0 ATSACAPIS(0.099)S(0.901)PK;ATSACAPIS(0.096)S(0.904)PK;ATSACAPIS(0.08)S(0.92)PK ;; 144.57 0.0010479 28516900 11032.6 9955.4 9662.1 9725.4 10111.8 9621.1 8392.8 6253.4 11103.6 6574.4 TRUE FALSE FALSE 9739.375352 10262.11407 10184.46235 10122.04385 9365.87266 9437.593547 8716.513107 6965.261779 10645.90491 6535.295176 1.490273215 1.570260225 1.558378325 1.548827341 1.433121597 1.444095988 1.333759665 1.065791459 1.628986086 1 12.67403668 -9.191385661 0.931089569 0.999597076 1.440611183 0 0.238051785 0.340563379 0.530520427 0.100158093 0.028196095 6.44E-10 9.191385661 0.441014107 KKGDDS(ph)DEEDLCISNK ddPTM_HeLa_CUDC101_4h_R1 1 KKGDDSDEEDLCISNK 16 2 Q9Y3M8-3;Q9Y3M8-4;Q9Y3M8-2;Q9Y3M8;H3BRG5;Q9Y3M8-5 Q9Y3M8-3 STARD13 StAR-related lipid transfer protein 13 1 0 KKGDDS(1)DEEDLCISNK 107.18 0.0017718 23397000 2561.2 2194.4 2199.8 1961.2 2278.6 1987.6 2157.4 2059.1 2202.3 890.34 TRUE FALSE FALSE 2260.980019 2262.006863 2318.727842 2041.186213 2110.512218 1949.689842 2240.611641 2293.499621 2111.520262 885.0442181 2.554652041 2.55581226 2.619900559 2.306309867 2.384640422 2.202929302 2.531638075 2.591395519 2.385779398 1 9.789605726 -9.191127041 0.769323734 0.922168481 2.470801109 0.059509257 0.44265379 0.140332039 0.138484948 0.134411952 0.031522057 6.44E-10 9.191127041 1.548632629 RSS(ph)LNS(ph)IS(ph)SS(ph)DAK ddPTM_HeLa_CUDC101_4h_R1 1 RSSLNSISSSDAK 13 1 A0A0A0MS69;Q14123-2;Q14123;Q14123-3 A0A0A0MS69 PDE1C "Calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase 1C" 4 0 RS(0.191)S(0.829)LNS(0.981)IS(0.566)S(0.566)S(0.868)DAK 52.365 0.039348 11349000 1052.1 808.5 840.01 1117 1000.2 934.85 949.51 822.7 1160.7 1093.3 TRUE FALSE FALSE 928.7744329 833.4089267 885.4234815 1162.556088 926.4172387 917.0192938 986.1329188 916.3528425 1112.855455 1086.797003 0.854597897 0.766848753 0.814709167 1.069708589 0.85242896 0.843781581 0.907375449 0.843168356 1.023977294 1 10.08586678 -9.190324495 0.991282925 0.998185336 0.870807742 0.351656294 0.076340866 0.550292531 0.992437016 0.047674846 0.014258431 6.45E-10 9.190324495 -0.127377594 YGGSVGSQPPPVAPEPGPVPS(ph)SPSQEPPTKR ddPTM_HeLa_CUDC101_4h_R1 2 YGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR 31 1 E9PS08;A0A087WTZ5;E9PJ81;E9PRQ7;Q04323;Q04323-2 E9PS08 UBXN1 UBX domain-containing protein 1 1 0 YGGSVGSQPPPVAPEPGPVPS(0.494)S(0.494)PS(0.012)QEPPT(0.001)KR;YGGSVGSQPPPVAPEPGPVPS(0.482)S(0.482)PS(0.034)QEPPT(0.002)KR ; 154.08 5.14E-17 188385000 5005.4 4430.3 4354.3 4687.8 4569.4 4059.3 3947.4 5134.7 4494.1 4544.7 TRUE FALSE FALSE 4418.6746 4566.792292 4589.706629 4878.988746 4232.324466 3981.875616 4099.65254 5719.213493 4308.851296 4517.667922 0.978087517 1.010873834 1.015945994 1.079979501 0.936838329 0.881400688 0.907470981 1.26596589 0.953777783 1 12.14136251 -9.190196379 0.002884587 2.21E-05 1.98110866 0.023807888 0.102034025 325578.0172 246.5813215 85698.69405 83654.04074 6.45E-10 9.190196379 1.981086568 NTPSQHS(ph)HSIQHS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 1 NTPSQHSHSIQHSPER 16 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 NT(0.018)PS(0.109)QHS(0.872)HS(0.042)IQHS(0.959)PER 82.406 0.0080543 3577200 1952.8 918.86 2403.9 2056 1780.9 1433.8 1615.1 2173.6 2102.9 2391.1 TRUE FALSE FALSE 1723.895744 947.1689875 2533.862105 2139.852567 1649.526555 1406.452654 1677.394948 2421.033838 2016.217572 2376.877631 0.725277449 0.398492954 1.066046511 0.900278811 0.693988842 0.591722786 0.705713633 1.0185774 0.848263093 1 11.21485192 -9.188664084 1.010257415 0.995505793 0.756267017 0.082230835 0.191833764 0.687716921 1.296330575 0.11245895 0.034301778 6.48E-10 9.188664084 -0.239238776 KLFAPQQILQCS(ph)PAN ddPTM_HeLa_CUDC101_4h_R1 2 KLFAPQQILQCSPAN 15 1 K7ERV3;P04183 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 0 KLFAPQQILQCS(1)PAN;KLFAPQQILQCS(1)PAN ; 87.863 0.026967 108563000 6856 6435.1 5352.7 6064.8 6392.7 5989.4 4992.5 3854.6 5783.6 3007.4 TRUE FALSE FALSE 6052.350073 6633.357804 5642.083153 6312.148758 5921.123257 5875.162174 5185.062397 4293.392083 5545.19756 2989.511851 2.024527874 2.218876571 1.887292452 2.111431255 1.980632141 1.965258031 1.734417743 1.436151552 1.854883953 1 11.54569421 -9.18835771 0.889105008 0.988631421 1.933093025 0.071441264 0.328981888 0.250617588 0.35046562 0.155119268 0.041941863 6.48E-10 9.18835771 0.944461604 TPTGS(ph)PATEVSAK ddPTM_HeLa_CUDC101_4h_R1 1 TPTGSPATEVSAK 13 0 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;S4R3G4;F8WBN2;F6SRV7;Q8NHM5-5 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 0 T(0.004)PT(0.001)GS(0.981)PAT(0.014)EVSAK 145.61 8.83E-06 0 2230.4 1805.2 1956 1653.6 2135.6 1941.5 2274.7 2242.6 2153.1 2658 TRUE FALSE FALSE 1968.955893 1860.816072 2061.747277 1721.040955 1978.061043 1904.469122 2362.435941 2497.888519 2064.348307 2642.190098 0.745198423 0.704270323 0.78031754 0.651369088 0.748644484 0.720791863 0.894120352 0.945385618 0.781301962 1 11.36751855 -9.188129669 0.902474796 1.001881714 0.768893767 0.016510278 0.105802399 0.39877276 0.57777112 0.061210491 0.01679428 6.48E-10 9.188129669 -0.232987947 VLGS(ph)EGEEEDEALSPAK ddPTM_HeLa_CUDC101_4h_R1 3 VLGSEGEEEDEALSPAK 17 0 M0R0Q7;P18858-2;P18858;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 0 VLGS(1)EGEEEDEALSPAK;VLGS(1)EGEEEDEALSPAK;VLGS(1)EGEEEDEALSPAK ;; 309.15 4.40E-144 175301000 13511.8 11813.6 11108.3 11622.1 13115.9 11338.4 11863.4 10087.8 12617.9 11285.1 TRUE FALSE FALSE 11927.96729 12177.56301 11708.8483 12096.09947 12148.36619 11122.13891 12320.97531 11236.15438 12097.78482 11217.97572 1.063290524 1.085540147 1.043757679 1.078278272 1.082937465 0.991456853 1.098324298 1.001620493 1.078428508 1 13.45352475 -9.186011885 0.928684591 0.999960861 1.057138059 0 0.041192681 0.538645835 0.835548077 0.020476142 0.005789598 6.52E-10 9.186011885 0.057177198 TPSS(ph)PLQSCTPSLSPR ddPTM_HeLa_CUDC101_4h_R1 1 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 0 TPS(0.01)S(0.99)PLQSCTPSLSPR 109.1 0.0018559 26822000 1437.5 1309 949.6 1335.7 1524.9 1153.6 984.12 1287.6 1264.3 629.32 TRUE FALSE FALSE 1268.998429 1349.328738 1000.938248 1390.175619 1412.411165 1131.597002 1022.077838 1434.175179 1212.185019 625.5767767 2.028525477 2.156935469 1.600024626 2.222230222 2.257774294 1.808885886 1.633816785 2.292564611 1.937707831 1 9.289043146 -9.18596921 0.714111524 0.925803582 1.99897431 0.041948622 0.372544066 0.35002045 0.289148409 0.224096196 0.049385151 6.52E-10 9.18596921 1.073170728 ENQSEGKGS(ph)DSDS(ph)EGDNPEK ddPTM_HeLa_CUDC101_4h_R1 1 ENQSEGKGSDSDSEGDNPEK 20 1 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 2 0 ENQS(0.254)EGKGS(0.553)DS(0.2)DS(0.993)EGDNPEK 61.684 0.02478 14171000 1945 1496.1 1871.5 1833 1852.4 1846 1531.3 1570.8 2176.6 2678.6 TRUE FALSE FALSE 1717.010048 1542.193068 1972.678951 1907.757663 1715.752143 1810.790626 1590.362754 1749.613523 2086.879627 2662.667568 0.644845819 0.579190991 0.740865655 0.716483607 0.644373396 0.680066354 0.597281753 0.657090485 0.783755228 1 11.37865661 -9.18587184 0.71847272 1.025131205 0.655026092 0.510702614 0.080452663 0.214104238 0.179503588 0.047411328 0.010507493 6.52E-10 9.18587184 -0.370105113 DDPDGKQEAKPQQAAGMLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 DDPDGKQEAKPQQAAGMLSPK 21 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 DDPDGKQEAKPQQAAGMLS(1)PK;DDPDGKQEAKPQQAAGMLS(1)PK;DDPDGKQEAKPQQAAGMLS(1)PK;DDPDGKQEAKPQQAAGMLS(1)PK ;;; 77.939 0.0019155 147330000 12346.7 9869.6 10579.6 10680.8 9618.8 9374.2 7147.4 4498.58 12847.1 14978.1 TRUE FALSE FALSE 10899.43854 10173.67068 11151.56518 11116.40919 8909.240287 9195.402753 7423.077612 5010.680163 12317.5371 14889.0096 0.732045908 0.6833007 0.748979649 0.746618445 0.598376959 0.617596671 0.498560872 0.336535492 0.827290561 1 13.86196017 -5.422538146 0.131428064 1.177895005 1.51E-18 0.795670805 0.077959211 4.990022642 0.177487252 0.423836136 1.255528664 3.78E-06 5.422538146 -1.177895005 EEQELMEEINEDEPVK ddPTM_HeLa_CUDC101_4h_R1 2 EEQELMEEINEDEPVK 16 0 O14776;O14776-2;G3V220 O14776 TCERG1 Transcription elongation regulator 1 0 0 ; ; 160.78 4.43E-08 0 1051.46 782.03 720.31 492.55 713.68 739.35 607.18 440.63 744.06 811.3 FALSE FALSE TRUE 928.2094527 806.1234174 759.2521374 512.638318 661.0332483 725.2481306 630.599136 490.7895381 713.3895319 806.4743515 1.150947269 0.999564854 0.941446105 0.635653591 0.819658117 0.899282326 0.781920882 0.608561868 0.884578078 1 9.655484842 -6.574748995 2.743182122 1.069033728 0.763442227 0.544495976 0.107203858 0.117548146 1.798538366 0.015893475 0.023748317 2.66E-07 6.574748995 -0.305591501 EEQERLER ddPTM_HeLa_CUDC101_4h_R1 1 EEQERLER 8 1 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 0 0 90.709 0.035325 3977300 1879.9 823.71 2299.2 2216.9 1451.5 1408.9 1761.6 937.41 2329 2319.9 FALSE FALSE TRUE 1659.540972 849.0875288 2423.501707 2307.314764 1344.425737 1382.02758 1829.545502 1044.120965 2232.997634 2306.101132 0.719630613 0.368191801 1.050908685 1.00052627 0.582986461 0.599291835 0.793350073 0.452764604 0.96829996 1 11.17124007 -13.52287874 0.187020804 2.32859334 0.639063359 0.246204378 0.203775118 60.06394305 0.704264767 28.99738257 0.256533797 3.00E-14 13.52287874 -1.689529982 T(ph)S(ph)AMLTVRAMPSK ddPTM_HeLa_CUDC101_4h_R1 1 TSAMLTVRAMPSK 13 1 H3BQA7;A6NGQ3;Q5VST9-5;Q5VST9-3;Q5VST9;Q5VST9-2;Q5VST9-6 H3BQA7 OBSCN Obscurin 2 0 T(0.999)S(0.999)AMLT(0.001)VRAMPSK 50.222 0.036972 22259000 2118.9 1898.8 1767.6 1764 1747.8 1928.5 1827.4 1803.7 2282.2 2335.4 TRUE FALSE FALSE 1870.525754 1957.299777 1863.161803 1835.943545 1618.868276 1891.717076 1897.88343 2009.025917 2188.12675 2321.508937 0.805737046 0.843115332 0.802564993 0.79084061 0.697334501 0.8148653 0.817521484 0.86539659 0.942545047 1 11.18084712 -9.185467981 0.567320908 1.030134327 0.79662088 0.684821785 0.044635351 0.45934368 0.218904181 0.056642165 0.010397519 6.52E-10 9.185467981 -0.233513447 GDQVLNFS(ph)DAEDLIDDSK ddPTM_HeLa_CUDC101_4h_R1 1 GDQVLNFSDAEDLIDDSK 18 0 F8W126;Q96EZ8-3;Q96EZ8;Q96EZ8-2;Q96EZ8-4 F8W126 MCRS1 Microspherule protein 1 1 0 GDQVLNFS(1)DAEDLIDDSK 110.56 0.00046723 22992000 2112.8 1702 1942.8 1736.2 2117 2018.3 2025.8 1617.6 2125.2 2695.7 TRUE FALSE FALSE 1865.140787 1754.436603 2047.833645 1807.00974 1960.833128 1979.80429 2103.935785 1801.741045 2037.598356 2679.665857 0.696034837 0.654722154 0.764212314 0.674341443 0.731745386 0.738825061 0.785148559 0.672375267 0.7603927 1 11.3878374 -9.184886417 0.810528727 1.010403688 0.715679282 0.220624294 0.082907409 0.179270295 0.201216765 0.033356977 0.008288431 6.53E-10 9.184886417 -0.294724406 ARQPQS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 ARQPQSPPR 9 1 O95613-2;O95613 O95613-2 PCNT Pericentrin 1 0 ARQPQS(1)PPR 96.756 0.011673 11147000 682.32 543.34 649.7 499.69 652.67 712.19 600.41 447.77 559.94 328.29 TRUE FALSE FALSE 602.3394839 560.0796614 684.8247472 520.069518 604.5238344 698.6061623 623.5680148 498.7423269 536.8590362 326.3373165 1.845757299 1.716259934 2.098518045 1.593656293 1.852450835 2.140748627 1.910808183 1.528303083 1.645104648 1 8.350220158 -9.184819171 0.613884514 0.894442904 1.863669894 0.242818846 0.270321108 0.395332499 0.227109329 0.211416927 0.041081436 6.53E-10 9.184819171 0.96922699 MFVSSSGLPPS(ph)PVPSPR ddPTM_HeLa_CUDC101_4h_R1 1 MFVSSSGLPPSPVPSPR 17 0 G1UD79;Q7Z309-3;Q7Z309-4;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 MFVSSSGLPPS(0.94)PVPS(0.06)PR 132.51 0.00024787 42148000 2309 1990.5 2046.9 1964.7 2208.3 1906.7 2101 2114.5 2362 3544.2 TRUE FALSE FALSE 2038.34252 2051.824946 2157.561606 2044.828958 2045.398109 1870.332874 2182.036274 2355.206133 2264.63736 3523.118941 0.578561937 0.582388781 0.612401012 0.580403044 0.580564591 0.530874179 0.619347888 0.668500318 0.642793331 1 11.78263747 -9.184057614 0.69634285 1.033558929 0.587450607 0.165066312 0.114744602 0.145629092 0.113300006 0.03826628 0.008265112 6.55E-10 9.184057614 -0.446108322 T(ph)RSNPEGAEDR ddPTM_HeLa_CUDC101_4h_R1 2 TRSNPEGAEDR 11 1 M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8;M0R2I2;M0R3H9 M0QXG9 BABAM1 BRISC and BRCA1-A complex member 1 1 0 T(0.899)RS(0.101)NPEGAEDR;T(0.873)RS(0.127)NPEGAEDR ; 117.52 0.0056525 404440000 4127.7 2340.65 4263 4907.2 3949.6 3495 4173.1 2542.17 5095.3 4927.8 TRUE FALSE FALSE 3643.857263 2412.762652 4493.470675 5107.336827 3658.245877 3428.338698 4334.057865 2831.560357 4885.269577 4898.489226 0.743873691 0.492552406 0.91731766 1.042635105 0.746811049 0.699876746 0.8847744 0.578047685 0.99730128 1 12.25812115 -9.183985125 0.986878695 0.996828442 0.771002749 0.273909174 0.151827585 0.618808782 1.10667042 0.09465852 0.028416068 6.55E-10 9.183985125 -0.225825693 VHSIIESDPVT(ph)PPSDPSIPIPTLPSVTAAK ddPTM_HeLa_CUDC101_4h_R1 2 VHSIIESDPVTPPSDPSIPIPTLPSVTAAK 30 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 VHSIIES(0.025)DPVT(0.776)PPS(0.195)DPS(0.004)IPIPTLPSVTAAK;VHS(0.001)IIES(0.064)DPVT(0.833)PPS(0.081)DPS(0.02)IPIPTLPSVTAAK ; 90.166 3.34E-07 18419000 1162.31 870.17 886.28 966.49 1341.78 1109.36 1307.05 950.06 1312.58 1574.19 TRUE FALSE FALSE 1026.065784 896.9789063 934.1949777 1005.90764 1242.799563 1088.200806 1357.463356 1058.21099 1258.474897 1564.826648 0.65570572 0.573212955 0.596995826 0.64282369 0.794209099 0.695413008 0.867484816 0.676248063 0.804226397 1 10.61178713 -9.183883158 0.937341643 0.999328882 0.689615924 0.366195318 0.100987128 0.29141663 0.462326263 0.060141621 0.017202049 6.55E-10 9.183883158 -0.309712958 KIS(ph)LEDIQAFEK ddPTM_HeLa_CUDC101_4h_R1 1 KISLEDIQAFEK 12 1 Q8WXX5 Q8WXX5 DNAJC9 DnaJ homolog subfamily C member 9 1 0 KIS(1)LEDIQAFEK 65.298 0.035857 12813000 2380.4 1862 2101.7 1801.3 2252.4 2380.7 1824.7 2961.7 2676.5 3027.3 TRUE FALSE FALSE 2101.37312 1919.366013 2215.324259 1874.7648 2086.244939 2335.292114 1895.07929 3298.847956 2566.173537 3009.293485 0.69829451 0.637812836 0.73616092 0.622991679 0.693267357 0.776026707 0.629742263 1.096220084 0.852749507 1 11.5552091 -9.183290461 0.903388017 1.00190613 0.725610436 0.205489338 0.137207019 0.462585152 0.673013138 0.084077514 0.023234033 6.56E-10 9.183290461 -0.276295694 LEEPPELNRQS(ph)PNPR ddPTM_HeLa_CUDC101_4h_R1 2 LEEPPELNRQSPNPR 15 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 LEEPPELNRQS(1)PNPR;LEEPPELNRQS(1)PNPR ; 79.886 0.01162 142235000 5301.6 5176.7 3919.4 4237.6 4714.2 4488.4 4768.4 5026 4629.9 6000.8 TRUE FALSE FALSE 4680.154485 5336.187991 4131.29462 4410.427644 4366.442858 4402.791248 4952.318785 5598.139524 4439.053562 5965.106975 0.784588525 0.894567023 0.692576786 0.73937109 0.73199741 0.738090912 0.830214581 0.938480994 0.744169984 1 12.5423323 -9.182673685 0.633747403 1.023393417 0.784526328 0 0.107361223 0.62308365 0.386693829 0.083505511 0.016682243 6.57E-10 9.182673685 -0.238867089 S(ph)IEDDEEGHLICQSGDVLR ddPTM_HeLa_CUDC101_4h_R1 2 SIEDDEEGHLICQSGDVLR 19 0 A0A087WX74;B7ZL31;Q9HAZ1 A0A087WX74 CLK4 Dual specificity protein kinase CLK4 1 0 S(1)IEDDEEGHLICQSGDVLR;S(1)IEDDEEGHLICQSGDVLR ; 138.05 3.01E-05 13557400 4647.5 4286.5 3326.2 3919.3 4358.9 4157.6 3970.5 3665.6 4620 2306.4 TRUE FALSE FALSE 4102.727095 4418.561984 3506.024433 4079.145995 4037.352631 4078.300707 4123.643515 4082.877087 4429.561645 2292.68143 1.789488518 1.927246379 1.529224421 1.779203138 1.760974106 1.778834448 1.798611643 1.78083053 1.932044106 1 11.16282019 -9.182217268 0.699280968 0.937819721 1.774696412 0 0.302650354 0.191865495 0.150940476 0.094729704 0.020586895 6.57E-10 9.182217268 0.836876691 KVTAEADSSS(ph)PTGILATSESK ddPTM_HeLa_CUDC101_4h_R1 1 KVTAEADSSSPTGILATSESK 21 1 A0MZ66-4;A0MZ66;A0MZ66-3;A0MZ66-7;A0MZ66-8;A0MZ66-5;A0MZ66-6 A0MZ66-4 KIAA1598 Shootin-1 1 0 KVTAEADS(0.013)S(0.245)S(0.722)PT(0.02)GILATSESK 104.55 4.33E-05 35070000 6316.8 5082.1 5948 5210.4 5999.8 5235.8 5374.6 5782 6065.4 6403 TRUE FALSE FALSE 5576.35428 5238.673477 6269.566872 5422.902633 5557.206707 5135.935838 5581.900122 6440.199508 5815.381645 6364.914671 0.876108254 0.823054785 0.985019784 0.851999267 0.873099954 0.806913541 0.876979569 1.011828098 0.913662153 1 12.63592546 -9.182003418 0.821040287 1.003795419 0.884146134 0.088477717 0.066558092 0.613632064 0.711293873 0.046555082 0.011755623 6.58E-10 9.182003418 -0.119649285 SDEEAS(ph)PLHPACSQK ddPTM_HeLa_CUDC101_4h_R1 1 SDEEASPLHPACSQK 15 0 Q5VVD7;Q8IWE5 Q5VVD7 PLEKHM2 Pleckstrin homology domain-containing family M member 2 1 0 S(0.116)DEEAS(0.884)PLHPACSQK 70.334 0.024856 6004400 2505.9 1976.3 2229.7 2174.1 2760.8 2131.9 2089.6 1244.5 2725.7 1212.7 TRUE FALSE FALSE 2212.162201 2037.187461 2350.244326 2262.769195 2557.141284 2091.237559 2170.196572 1386.16885 2613.345492 1205.486806 1.835077903 1.689929288 1.949622604 1.877058449 2.121251988 1.734766028 1.800265719 1.149883053 2.167875648 1 10.23540015 -9.181358022 0.758994794 0.957260904 1.794431629 0 0.432395914 0.400917592 0.38467297 0.205740514 0.048254142 6.59E-10 9.181358022 0.837170725 VMTIPYQPMPASS(ph)PVICAGGQDR ddPTM_HeLa_CUDC101_4h_R1 3 VMTIPYQPMPASSPVICAGGQDR 23 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 VMTIPYQPMPAS(0.202)S(0.798)PVICAGGQDR;VMTIPY(0.001)QPMPAS(0.096)S(0.903)PVICAGGQDR;VMTIPY(0.002)QPMPAS(0.311)S(0.687)PVICAGGQDR ;; 140.04 1.50E-07 126196000 10001 8732.3 7973 8443.3 9409 8312 8319 6138.12 9413.7 2305.3 TRUE FALSE FALSE 8828.697941 9001.331813 8404.044497 8787.654269 8714.916815 8153.462449 8639.866617 6836.85877 9025.663302 2291.587973 3.852655034 3.927988765 3.66734535 3.834744453 3.803003384 3.557996701 3.770253081 2.983459003 3.938606507 1 11.16213196 -9.18116068 0.772805086 0.866877465 3.707577009 0 0.936671696 0.137184038 0.137496867 0.240787245 0.057455458 6.59E-10 9.18116068 2.840699544 S(ph)PSPAVPLR ddPTM_HeLa_CUDC101_4h_R1 2 SPSPAVPLR 9 0 Q6P4R8-3;Q6P4R8;Q6P4R8-2;E9PQ59 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 S(0.712)PS(0.288)PAVPLR;S(0.73)PS(0.27)PAVPLR ; 114.86 0.0078142 109174000 5982.7 5039.8 5298.5 4882.5 5298.8 5010.9 5109 4873.8 4834.1 3824.1 TRUE FALSE FALSE 5281.416975 5195.070264 5584.952937 5081.629454 4907.918081 4915.325431 5306.055841 5428.613691 4634.836352 3801.354083 1.389351494 1.36663677 1.469200926 1.336794559 1.291097323 1.293045931 1.395833097 1.428073674 1.219259309 1 11.8922977 -9.180971655 0.761108877 0.980116845 1.371204919 0.556485695 0.084516985 0.213069342 0.205851739 0.051137398 0.012031119 6.59E-10 9.180971655 0.391088075 EAS(ph)AESDVGK ddPTM_HeLa_CUDC101_4h_R1 2 EASAESDVGK 10 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 EAS(1)AESDVGK;EAS(0.999)AES(0.001)DVGK ; 122.18 0.0043079 23708000 4435.5 3719.2 4052.6 4776.9 4671.5 4781.9 4726.2 3056.2 5363.3 18765.7 TRUE FALSE FALSE 3915.577414 3833.784144 4271.695814 4971.72263 4326.892752 4690.693225 4908.491117 3404.105454 5142.222504 18654.08078 0.209904603 0.205519864 0.228995246 0.266521985 0.23195422 0.25145668 0.263132297 0.182485832 0.275662069 1 14.18720365 -9.180603877 0.69265 1.06393644 0.223404317 0.060036112 0.224169699 0.087139677 0.067048123 0.042992242 0.009284014 6.60E-10 9.180603877 -0.840532123 NSPAT(ph)LFEVPDTW ddPTM_HeLa_CUDC101_4h_R1 1 NSPATLFEVPDTW 13 0 O95453;O95453-3;O95453-2;A0A494C0W0;A0A494C0K5;A0A494C0Q6;O95453-4 O95453 PARN Poly(A)-specific ribonuclease PARN 1 0 NS(0.002)PAT(0.998)LFEVPDTW 220.32 6.89E-32 9419500 1766.3 1440.7 1454.5 1561.1 1701.1 1961.1 1637.4 1070.7 1770.8 1903.7 TRUE FALSE FALSE 1559.256992 1485.086259 1533.13467 1624.768406 1575.613242 1923.695285 1700.555066 1192.58416 1697.806874 1892.376708 0.823967546 0.78477306 0.81016357 0.858586136 0.832610778 1.016549864 0.898634537 0.630204417 0.897182293 1 10.88598359 -9.179566121 0.89303683 1.00150345 0.83898479 0.156957929 0.096192963 0.598172453 0.848042505 0.063598736 0.017464759 6.61E-10 9.179566121 -0.16251866 QELAVFCS(ph)PEPPAK ddPTM_HeLa_CUDC101_4h_R1 1 QELAVFCSPEPPAK 14 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 QELAVFCS(1)PEPPAK 86.488 0.018455 5696800 3679.4 3050.9 3370.5 3204.5 3190.5 3444.1 3203.3 3214.2 3363.9 1994.5 TRUE FALSE FALSE 3248.10631 3144.894613 3552.719425 3335.193361 2955.143171 3378.409531 3326.852354 3580.091536 3225.238618 1982.636625 1.638276156 1.586218358 1.791916572 1.682201024 1.490511743 1.703998346 1.677993996 1.805722486 1.626742176 1 10.95320457 -9.179519043 0.535583742 0.883141053 1.691463098 0.058300337 0.211978074 0.296757593 0.124123851 0.122424631 0.021863288 6.61E-10 9.179519043 0.808322045 NPEPDS(ph)DEHT(ph)PVEDEEPK ddPTM_HeLa_CUDC101_4h_R1 1 NPEPDSDEHTPVEDEEPK 18 0 A0A494C050;Q8N5F7 A0A494C050;Q8N5F7 NKAP NF-kappa-B-activating protein 2 0 NPEPDS(1)DEHT(1)PVEDEEPK 67.877 0.027397 16654000 2474.2 1953.8 1794.8 2136.4 1974 1722 2077.3 1395.7 2241.8 3167.9 TRUE FALSE FALSE 2184.178027 2013.994262 1891.832317 2223.531626 1828.381953 1689.155719 2157.422157 1554.580846 2149.392055 3149.05719 0.693597447 0.63955468 0.600761499 0.706094393 0.580612495 0.536400458 0.685100977 0.493665485 0.682550975 1 11.62070424 -9.178871707 0.325287609 1.156418811 0.566373959 0.245258615 0.11431095 0.711806449 0.10478287 0.157071437 0.027379441 6.62E-10 9.178871707 -0.590044853 EESEESDEDMGFGLFD ddPTM_HeLa_CUDC101_4h_R1 2 EESEESDEDMGFGLFD 16 0 F8VWS0;P05388-2;Q8NHW5;P05388;F8W1K8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 0 0 ; ; 185.71 4.54E-10 8936200 5628.3 4625.3 4443.9 4742 4951.8 4718.3 5383.2 6483.6 5905.5 5050.9 FALSE FALSE TRUE 4968.559206 4767.800011 4684.150676 4935.399257 4586.515579 4628.306289 5590.831827 7221.666816 5662.07279 5020.857022 0.989583887 0.949598841 0.932938472 0.982979447 0.913492569 0.92181599 1.113521417 1.438333493 1.127710422 1 12.29371793 -4.327961783 2.693551887 0.976965032 1.493775476 0.849079667 0.058746947 0.069466707 0.72507384 0.005542603 0.074049353 4.70E-05 4.327961783 0.516810444 EESGKPGAHVTVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 EESGKPGAHVTVKK 14 2 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 1 EESGKPGAHVTVK(1)K 56.139 0.0357 99065000 33169 15882 14512 13353 46334 27810 29127 25933 38001 27583 FALSE TRUE FALSE 29280.9801 16371.3056 15296.56262 13897.59306 42916.03313 27279.57058 30250.43815 28885.1079 36434.5827 27418.93509 1.067910917 0.597080286 0.557883177 0.506861153 1.565196934 0.994917217 1.103268163 1.053473003 1.328811005 1 14.74288492 -5.759557498 24.99993891 0.924225725 1.160624985 0.2210555 0.284852578 79.92436579 1061731.139 0.041830232 0.080384893 1.74E-06 5.759557498 0.23639926 SKYDEIFYNLAPADGKLS(ph)GSK ddPTM_HeLa_CUDC101_4h_R1 2 SKYDEIFYNLAPADGKLSGSK 21 2 Q9NZN4;Q9NZN4-2 Q9NZN4 EHD2 EH domain-containing protein 2 1 0 SKYDEIFY(0.012)NLAPADGKLS(0.971)GS(0.017)K;SKYDEIFYNLAPADGKLS(0.77)GS(0.23)K ; 120.31 7.77E-07 293300000 7326.8 6702.1 5646.1 6000.5 6799.6 6561.3 5727.1 6198 5793.7 5149.5 TRUE FALSE FALSE 6467.963611 6908.583757 5951.345245 6245.226326 6298.007055 6436.154134 5947.996165 6903.555267 5554.881234 5118.870545 1.263552878 1.349630489 1.16262859 1.220039904 1.230350914 1.257338719 1.161974329 1.348648145 1.085177127 1 12.32160981 -9.17821281 0.83418507 0.993239338 1.24583615 0.601518637 0.065763315 0.281150119 0.339077759 0.045261092 0.011661573 6.63E-10 9.17821281 0.252596812 KY(ph)LPPT(ph)S(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 KYLPPTSR 8 1 Q9HBI0-5;Q9HBI0-4;Q9HBI0-3;Q9HBI0-2;Q9HBI0 Q9HBI0-5 PARVG Gamma-parvin 3 0 KY(1)LPPT(1)S(1)R 50.353 0.0032973 0 620.86 528.11 478.67 656.28 554.77 498.15 620.77 481.3 652.46 774.11 TRUE FALSE FALSE 548.083732 544.3804431 504.5483481 683.0459351 513.8457224 488.6486187 644.7133068 536.0892465 625.5653226 769.5055593 0.712254415 0.707441859 0.655678626 0.887642626 0.667760897 0.635016359 0.837828004 0.696667152 0.812944514 1 9.587787939 -9.177634562 0.758460124 1.014870654 0.724682047 0.298734208 0.094297819 0.358547863 0.344034257 0.063689692 0.015000564 6.64E-10 9.177634562 -0.290188607 ENRSLETKY(ph)RHLQMQAT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ENRSLETKYRHLQMQATK 18 3 Q8IYM0-2;Q8IYM0 Q8IYM0-2 FAM186B Protein FAM186B 2 0 ENRS(0.035)LET(0.035)KY(0.932)RHLQMQAT(0.998)K 43.557 0.03146 21298000 1575.2 1322.8 1700 1316.6 1609 1474.3 1285.3 1386.5 1351.5 11660 TRUE FALSE FALSE 1390.557444 1363.5539 1791.907142 1370.296639 1490.307276 1446.180184 1334.874452 1544.333556 1295.790598 11590.6458 0.119972387 0.117642617 0.154599422 0.118224356 0.12857845 0.124771321 0.115168255 0.133239647 0.111796238 1 13.50067333 -9.177563524 0.644508475 1.092931853 0.11221523 0 0.274589405 0.071487273 0.046320619 0.039644455 0.008082174 6.64E-10 9.177563524 -0.980716623 EESQIPVDEVFFHR ddPTM_HeLa_CUDC101_4h_R1 2 EESQIPVDEVFFHR 14 0 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 0 0 ; ; 115.1 0.0021636 5238100 6098 5280.4 5453.4 4783 5874.4 5696.9 5146.9 4774.9 5573.6 5667.7 FALSE FALSE TRUE 5383.201684 5443.082865 5748.2273 4978.071414 5441.057215 5588.241124 5345.417657 5318.455315 5343.853849 5633.988268 0.955486847 0.966115406 1.020276761 0.883578591 0.965755865 0.991880149 0.948780403 0.943994744 0.948502836 1 12.45994084 PS(ph)GLPAPAPGPTSSPGPAR ddPTM_HeLa_CUDC101_4h_R1 1 PSGLPAPAPGPTSSPGPAR 19 0 Q8N6N2-2;Q8N6N2 Q8N6N2-2 TTC9B Tetratricopeptide repeat protein 9B 1 0 PS(0.937)GLPAPAPGPTSS(0.062)PGPAR 63.537 0.025724 42162000 715.35 623.8 613.43 515.97 780.86 565.95 455.56 687.31 550.04 368.83 TRUE FALSE FALSE 631.4977574 643.0185386 646.5938813 537.0134868 723.2575135 555.1554467 473.1311018 765.5505922 527.3671184 366.6361828 1.722409809 1.753832734 1.763584479 1.464704009 1.972684496 1.514186195 1.290464837 2.088038847 1.438393544 1 8.51820536 -9.177221672 0.778952335 0.96839849 1.685789878 0.298269676 0.258204654 0.39580976 0.405093311 0.175844554 0.042492333 6.65E-10 9.177221672 0.717391388 REHFS(ph)FSPRMPVGDFFEER ddPTM_HeLa_CUDC101_4h_R1 1 REHFSFSPRMPVGDFFEER 19 2 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;H0YII3 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 REHFS(0.981)FS(0.019)PRMPVGDFFEER 64.377 0.01988 7018800 1459.4 1316.1 1361.5 1183.8 1716.1 1499.4 1229.8 1061.1 1456.7 10286 TRUE FALSE FALSE 1288.331344 1356.647481 1435.106808 1232.080481 1589.506722 1470.801443 1277.233798 1181.891335 1396.654209 10224.81841 0.126000413 0.132681817 0.140355237 0.120499008 0.155455741 0.143846216 0.124915059 0.115590447 0.136594525 1 13.3197876 -9.176725725 0.646864946 1.090932581 0.119210245 0 0.266748504 0.071914172 0.04702808 0.039583774 0.008102845 6.66E-10 9.176725725 -0.971722336 EETEELK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 EETEELKR 8 1 P12956;P12956-2;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 1 ; EETEELK(1)R;EETEELK(1)R 111.74 0.0044915 3890900 2674.8 748.13 1439.8 1269.86 1982.46 1814.8 1998.3 1071.15 2092.34 1784.49 FALSE TRUE FALSE 2361.263999 771.1789985 1517.639943 1321.65038 1836.217875 1780.185714 2075.3751 1193.085386 2006.09286 1773.875774 1.331132672 0.434742393 0.855550296 0.745063662 1.03514457 1.003557148 1.169966426 0.672586775 1.130909441 1 10.79268926 -7.31152625 24.99991843 1.156368185 0.867657058 0.31176914 0.20837404 362.3108846 180839.8709 0.038556999 0.044091633 4.88E-08 7.31152625 -0.288711127 CTLPEHES(ph)PSQDISDACEAESTER ddPTM_HeLa_CUDC101_4h_R1 4 CTLPEHESPSQDISDACEAESTER 24 0 Q32MZ4-3;Q32MZ4-2;Q32MZ4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 CT(0.001)LPEHES(0.946)PS(0.053)QDISDACEAESTER;CTLPEHES(0.937)PS(0.063)QDISDACEAESTER;CTLPEHES(0.921)PS(0.079)QDISDACEAESTER;CTLPEHES(0.997)PS(0.003)QDISDACEAESTER ;;; 144.4 5.06E-09 172874000 12066.2 10020.9 10133.3 9860.9 12595.9 10658 9477.5 8864.9 11435.1 2992.68 TRUE FALSE FALSE 10651.81833 10329.63205 10681.13685 10263.07012 11666.72555 10454.71641 9843.05035 9874.044383 10963.74034 2974.879406 3.580588277 3.472285979 3.590443642 3.449911315 3.921747392 3.514332845 3.308722474 3.319141059 3.685440262 1 11.53861547 -9.176423397 0.676737996 0.774052382 3.558006263 0 0.844021023 0.125259699 0.09132118 0.202132017 0.04300409 6.66E-10 9.176423397 2.783953881 SRS(ph)RS(ph)Y(ph)T(ph)PEYR ddPTM_HeLa_CUDC101_4h_R1 1 SRSRSYTPEYR 11 2 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 4 0 S(0.317)RS(0.702)RS(0.991)Y(0.99)T(0.997)PEY(0.002)R 52.071 0.0033632 0 915.32 822.55 825.77 563.69 948.24 825.54 730.31 833.15 695.93 1140.4 TRUE FALSE FALSE 808.0275771 847.8917905 870.413624 586.6797147 878.2902244 809.7941999 758.4783013 927.9924283 667.2434708 1133.61685 0.712787197 0.747952706 0.767819942 0.517529106 0.774768145 0.714345592 0.669078182 0.818612063 0.588596994 1 10.14671739 -9.174085359 0.609957145 1.035578228 0.705489579 0 0.149274532 0.477749732 0.271906699 0.086535853 0.016966339 6.70E-10 9.174085359 -0.330088649 EEVAEEAQSGGD ddPTM_HeLa_CUDC101_4h_R1 2 EEVAEEAQSGGD 12 0 O76070 O76070 SNCG Gamma-synuclein 0 0 ; ; 137.14 0.0074151 26320000 14721.7 11524.6 12484 11230.9 10516.7 11198.4 10400.9 9078.3 13106.1 12165.6 FALSE FALSE TRUE 12996.04464 11879.65927 13158.9228 11688.94465 9740.903993 10984.80918 10802.0662 10111.73698 12565.86101 12093.23847 1.074653797 0.982338957 1.088122328 0.966568606 0.805483495 0.908343055 0.893231885 0.836147985 1.039081553 1 13.56191302 -5.968712336 5.494059229 1.034785486 0.867376847 0.814262177 0.039568484 0.061244436 5.044062999 0.006207636 0.011239651 1.07E-06 5.968712336 -0.167408639 EEVGQYLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EEVGQYLKK 9 1 Q6GMV3 Q6GMV3 PTRHD1 Putative peptidyl-tRNA hydrolase PTRHD1 0 1 ; EEVGQYLK(1)K;EEVGQYLK(1)K 116.52 0.002147 1381460 912.39 700.48 384.17 658.05 1032.9 998.54 1000.3 813.72 866.86 561.53 FALSE TRUE FALSE 805.4410273 722.0609585 404.9393923 684.8881233 956.7050248 979.4945132 1038.881906 906.3505956 831.1276639 558.1899946 1.442951388 1.293575602 0.725450825 1.226980293 1.713941551 1.754769026 1.86116182 1.623731354 1.488969118 1 9.124612454 -5.762905862 5.188234884 1.180480832 1.753138508 0.613328526 0.211005891 0.094933636 7.347621769 0.033630943 0.065076861 1.73E-06 5.762905862 0.572657676 QKEDVEVVGGS(ph)DGEGAIGLSSDPK ddPTM_HeLa_CUDC101_4h_R1 3 QKEDVEVVGGSDGEGAIGLSSDPK 24 1 Q8NHZ8 Q8NHZ8 CDC26 Anaphase-promoting complex subunit CDC26 1 0 QKEDVEVVGGS(1)DGEGAIGLSSDPK;QKEDVEVVGGS(0.988)DGEGAIGLS(0.005)S(0.006)DPK;QKEDVEVVGGS(0.98)DGEGAIGLS(0.009)S(0.011)DPK ;; 106.18 6.42E-07 647758000 21314.7 19559.7 17203.6 16603.9 20309.7 17924 18149 19832 20228.1 20111.9 TRUE FALSE FALSE 18816.22318 20162.31117 18133.67865 17281.07881 18811.49389 17582.12956 18849.01301 22089.59472 19394.28916 19992.27352 0.941174757 1.008505168 0.907034342 0.864387874 0.940938201 0.879446229 0.942814882 1.104906588 0.970089226 1 14.28715492 -9.173935082 0.631090136 1.005955408 0.942011564 0.034494773 0.065426644 2.019123817 1.246473418 0.072150618 0.014528765 6.70E-10 9.173935082 -0.063943844 EEYEGPNK(ac)KPR ddPTM_HeLa_CUDC101_4h_R1 2 EEYEGPNKKPR 11 2 P23246 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 1 ; EEYEGPNK(0.816)K(0.184)PR;EEYEGPNK(0.793)K(0.207)PR 114.89 0.0053474 134318000 14635.7 13936.3 14325.3 14603.5 15983.1 14561.9 15717.2 16230.5 10892 10079.4 FALSE TRUE FALSE 12920.12543 14365.66088 15099.76905 15199.09385 14804.05856 14284.15602 16323.41767 18078.11451 10443.02715 10019.44728 1.289504807 1.433777781 1.50704611 1.516959312 1.477532457 1.425643114 1.629173468 1.804302574 1.042275772 1 13.2905153 -6.913741298 0.068267489 8.89E-12 2.755116949 0.895773928 0.075541394 5.62102119 0.266758215 4.895296431 5.635280473 1.22E-07 6.913741298 2.755116949 ACASPS(ph)AQVEGS(ph)PVAGSDGSQPAVK ddPTM_HeLa_CUDC101_4h_R1 1 ACASPSAQVEGSPVAGSDGSQPAVK 25 0 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 2 0 ACAS(0.344)PS(0.656)AQVEGS(0.999)PVAGS(0.001)DGSQPAVK 116.46 1.53E-07 15764000 3391.7 3229.3 2481.9 2820 3293.6 2980 2889.6 2453.9 3076.8 2544.5 TRUE FALSE FALSE 2994.130067 3328.790905 2616.079021 2935.011789 3050.63769 2923.161465 3001.05284 2733.242057 2949.973002 2529.365201 1.183747632 1.316057841 1.034282839 1.160374859 1.206088266 1.155689761 1.186484593 1.080603962 1.166289866 1 11.30455964 -9.173746392 0.934924646 1.000494732 1.167114813 0 0.086560054 0.405896688 0.642232998 0.044843165 0.012959248 6.70E-10 9.173746392 0.166620081 EFAGEDTSDLFLEER ddPTM_HeLa_CUDC101_4h_R1 2 EFAGEDTSDLFLEER 15 0 O14980 O14980 XPO1 Exportin-1 0 0 ; ; 201.38 8.04E-16 37816000 5649.3 3811.7 3847.6 4259.7 4949.1 4650.7 3746.2 3569 4748.7 5955 FALSE FALSE TRUE 4987.097618 3929.133959 4055.612894 4433.428978 4584.014753 4561.995646 3890.692189 3975.280534 4552.956576 5919.579395 0.842474994 0.663752219 0.685118422 0.748943241 0.774381835 0.770662127 0.657258215 0.671547802 0.769135148 1 12.53127896 -7.989578539 0.752012508 0.979882053 0.709624595 0.30625944 0.082517438 0.176245139 0.219212457 0.01945298 0.014092549 1.02E-08 7.989578539 -0.270257458 KIDS(ph)EEEENELEAINR ddPTM_HeLa_CUDC101_4h_R1 1 KIDSEEEENELEAINR 16 1 Q9H1H9;A0A1B0GUA8;H0Y9Z7 Q9H1H9 KIF13A Kinesin-like protein KIF13A 1 0 KIDS(1)EEEENELEAINR 78.674 0.0097292 5083400 1771.7 1374.5 1518.3 1699.2 1643.8 1737.8 1477.6 1558 1694 2071.9 TRUE FALSE FALSE 1564.024012 1416.846716 1600.383891 1768.500721 1522.540149 1704.65436 1534.591527 1735.356422 1624.172603 2059.576247 0.759391168 0.687931179 0.777045226 0.858672129 0.739249227 0.827672373 0.745100614 0.842579353 0.788595521 1 11.00813182 -9.17366732 0.881660788 1.002559433 0.778405413 0.033854438 0.080769109 0.242154939 0.333776765 0.035269018 0.00963915 6.70E-10 9.17366732 -0.22415402 Y(ph)Y(ph)HT(ph)LFTHS(ph)LPK ddPTM_HeLa_CUDC101_4h_R1 1 YYHTLFTHSLPK 12 0 Q92935 Q92935 EXTL1 Exostosin-like 1 4 0 Y(0.998)Y(0.998)HT(0.992)LFT(0.098)HS(0.914)LPK 40.767 0.03907 12840000 61.837 118.44 62.73 151.43 330.79 222.45 220.7 200.94 265.77 6146.2 TRUE FALSE FALSE 54.5885606 122.088996 66.12137355 157.6059699 306.3882807 218.2071369 229.2124729 223.8141974 254.8148481 6109.642129 0.008934821 0.019983003 0.010822463 0.025796269 0.050148319 0.035715208 0.037516514 0.036632947 0.041707001 1 12.57687216 -9.173569341 0.677868133 1.085882697 0.016059563 0 0.295406345 0.073376846 0.05379082 0.045509846 0.009732381 6.71E-10 9.173569341 -1.069823134 EFAPSDEELDSYR ddPTM_HeLa_CUDC101_4h_R1 2 EFAPSDEELDSYR 13 0 I3L0X5;I3L4C3;O75391 I3L0X5 SPAG7 Sperm-associated antigen 7 0 0 ; ; 220.5 7.77E-32 13720400 2171.77 1940.27 1642.85 1686.07 1984.54 2307 1853.21 1786.87 1814.22 2311.04 FALSE FALSE TRUE 1917.198413 2000.047419 1731.66744 1754.835222 1838.144438 2262.997819 1924.68893 1990.280058 1739.437084 2297.293831 0.834546451 0.87061019 0.753785788 0.763870602 0.800134668 0.985071125 0.837807034 0.866358509 0.757167873 1 11.16571968 -9.10393426 0.773125175 1.005028753 0.837554282 0 0.09659678 0.496558804 0.515326287 0.050195376 0.013219118 7.87E-10 9.10393426 -0.16747447 HSLSIPPVSS(ph)PPEQK ddPTM_HeLa_CUDC101_4h_R1 2 HSLSIPPVSSPPEQK 15 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 HSLSIPPVS(0.229)S(0.771)PPEQK;HSLSIPPVS(0.032)S(0.968)PPEQK ; 109.36 0.0017151 21327000 6985.4 6231.4 5340.5 5324.7 7349.6 6623 6174.9 6064.1 6735.2 7599.4 TRUE FALSE FALSE 6166.582001 6423.382048 5629.223584 5541.864281 6807.43465 6496.67731 6413.067961 6754.412632 6457.572205 7554.198431 0.81631189 0.850306238 0.745178146 0.733613809 0.901145861 0.860008824 0.848940893 0.89412698 0.854832219 1 12.88306297 -9.173299499 0.834416894 1.004311542 0.829071696 0.114470468 0.068413347 0.380312299 0.459901313 0.042407942 0.010998854 6.71E-10 9.173299499 -0.175239846 EFDEDSEDRLVNEK ddPTM_HeLa_CUDC101_4h_R1 1 EFDEDSEDRLVNEK 14 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;Q9UHD8-3;Q9UHD8-4;Q9UHD8-9;Q9UHD8-8 Q9UHD8-7 9-Sep Septin-9 0 0 77.644 0.03835 10245000 2047.8 1787.6 1836.5 1714.3 1607.2 1651.2 1801.2 1200.5 1829.8 1848.6 FALSE FALSE TRUE 1807.759988 1842.673837 1935.786745 1784.216564 1488.640058 1619.706111 1870.672887 1337.160067 1754.37487 1837.604445 0.983759042 1.002758696 1.053429507 0.970947022 0.810098203 0.881422613 1.017995408 0.727664798 0.954707567 1 10.84361054 -5.907111103 6.5644267 0.997857798 0.872808207 0.458938755 0.071682411 0.148035617 8.827657593 0.009526763 0.017379872 1.24E-06 5.907111103 -0.125049591 EAS(ph)PAPLAQGEPGREDLPTR ddPTM_HeLa_CUDC101_4h_R1 2 EASPAPLAQGEPGREDLPTR 20 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 EAS(0.995)PAPLAQGEPGREDLPT(0.005)R;EAS(1)PAPLAQGEPGREDLPTR ; 86.832 0.001379 307890000 4018.7 3348.6 3405.6 3631.8 3302.8 3360.9 3410.8 3252.5 4077.2 4681.2 TRUE FALSE FALSE 3547.634078 3451.766397 3589.717037 3779.920502 3059.159024 3296.796432 3542.355699 3622.751453 3909.13609 4653.356014 0.762381831 0.741779994 0.771425403 0.812299874 0.657409193 0.708477155 0.761247514 0.778524455 0.840068131 1 12.18405585 -9.172986633 0.520006822 1.046554197 0.738395289 0.470446208 0.063139015 0.391807196 0.153720245 0.06051311 0.010724542 6.71E-10 9.172986633 -0.308158908 ELDQDMVT(ph)EDEDDPGSHK ddPTM_HeLa_CUDC101_4h_R1 1 ELDQDMVTEDEDDPGSHK 18 0 Q9NRL2;Q9NRL2-2;A0A087WWN7 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 ELDQDMVT(1)EDEDDPGSHK 120.64 0.00012753 7633100 1916.5 1467 1794.4 1716.7 2112.6 2420.1 2104.9 1504.8 2141.8 6270 TRUE FALSE FALSE 1691.850775 1512.196531 1891.410692 1786.714446 1956.757707 2373.940625 2186.086698 1676.100349 2053.514097 6232.705761 0.27144724 0.242622801 0.303465423 0.286667543 0.313949957 0.380884437 0.350744409 0.268920179 0.329473936 1 12.60564289 -9.172803049 0.752530947 1.038584246 0.299866702 0.029402775 0.208866327 0.107774041 0.10170103 0.048495128 0.011409841 6.72E-10 9.172803049 -0.738717544 EFEVYGPIK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 EFEVYGPIKR 10 1 P08621;P08621-2;M0QYR1;P08621-3 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 1 EFEVYGPIK(1)R 140.75 0.00077437 1369300 807.82 276.6 232.26 314.99 567.93 488.07 856.17 427.62 595.88 467.35 FALSE TRUE FALSE 713.1285642 285.1217181 244.8166781 327.8366537 526.0349354 478.7608779 889.1927637 476.2985323 571.3175742 464.5701814 1.535028705 0.613732283 0.526974584 0.705677348 1.132304561 1.030545862 1.914011702 1.025245596 1.229776678 1 8.859752747 S(ph)PAWNETGR ddPTM_HeLa_CUDC101_4h_R1 2 SPAWNETGR 9 0 Q9UPQ9-1;Q9UPQ9;H0Y720 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 S(1)PAWNETGR;S(1)PAWNETGR ; 105.25 0.012819 14541900 725.93 636.78 566.49 591.85 730.27 560.58 613.39 764.33 730.12 718.51 TRUE FALSE FALSE 640.8375858 656.398437 597.1161629 615.9882012 676.399437 549.8878705 637.0486578 851.3382377 700.0241446 714.2362706 0.897234728 0.919021428 0.836020498 0.862443181 0.947024766 0.769896312 0.891929861 1.191956041 0.980101646 1 9.480257589 -9.172250233 0.879342115 1.001030808 0.905642535 0.070883061 0.10470346 1.149874358 1.575922506 0.071163235 0.01943521 6.73E-10 9.172250233 -0.095388273 KSNLDEEVNVIPPHT(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 3 KSNLDEEVNVIPPHTPVR 18 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 0 KSNLDEEVNVIPPHT(1)PVR;KSNLDEEVNVIPPHT(1)PVR;KSNLDEEVNVIPPHT(1)PVR ;; 140.45 0.00082893 39362800 10181.8 8796 8665 8595.3 9903.8 9306 7946.9 7301.4 8096.8 7425.9 TRUE FALSE FALSE 8988.304839 9066.994334 9133.45611 8945.853486 9173.216405 9128.503555 8253.414595 8132.561863 7763.046477 7381.730417 1.21764198 1.228302014 1.237305563 1.211891112 1.242691874 1.236634643 1.118086699 1.101714829 1.051656731 1 12.84974334 -9.171683762 0.847559395 0.995735302 1.202253424 0.655472743 0.049683914 0.291950446 0.366700665 0.038577148 0.010177566 6.73E-10 9.171683762 0.206518121 EFHLNESGDPSSK ddPTM_HeLa_CUDC101_4h_R1 2 EFHLNESGDPSSK 13 0 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 0 0 ; ; 137.93 0.00076405 117702000 23007.8 15700.7 14888.4 13507 25173.1 20132.4 20260.9 19606.5 21324 20651.9 FALSE FALSE TRUE 20310.86056 16184.41996 15693.31194 14057.87384 23316.13056 19748.40801 21042.3697 21838.42471 20445.01569 20529.06158 0.989371116 0.788366282 0.764443707 0.684779174 1.135762123 0.961973246 1.025003974 1.063780954 0.995906004 1 14.32538006 AYQDTTLNSSS(ph)EYCVEK ddPTM_HeLa_CUDC101_4h_R1 1 AYQDTTLNSSSEYCVEK 17 0 X6R717;Q7L7V1-2;Q7L7V1 X6R717 DHX32 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 1 0 AYQDTTLNS(0.228)S(0.228)S(0.545)EYCVEK 172.26 4.13E-07 6237700 2468.9 2144.1 2296.5 1813.8 2427.3 2130.4 2030.3 1314.5 2473 893.65 TRUE FALSE FALSE 2179.499285 2210.15718 2420.655737 1887.774604 2248.242915 2089.766169 2108.609351 1464.137367 2371.061893 888.3345301 2.453466809 2.487978464 2.724937121 2.125071738 2.530851654 2.352454057 2.373665865 1.648182432 2.66910923 1 9.79495926 -9.171333278 0.828310483 0.962884933 2.359457301 0 0.579947205 0.237659079 0.282620811 0.21044666 0.054335425 6.74E-10 9.171333278 1.396572367 SGMS(ph)PPPCK ddPTM_HeLa_CUDC101_4h_R1 1 SGMSPPPCK 9 0 Q9H6T0-2;Q9H6T0 Q9H6T0-2 ESRP2 Epithelial splicing regulatory protein 2 1 0 S(0.027)GMS(0.973)PPPCK 106.88 0.011771 15854000 3142 2727.7 2678.2 3004.3 2828.6 2543.2 2404.2 1818.8 2773.8 1151.5 TRUE FALSE FALSE 2773.699523 2811.737204 2822.991593 3126.82834 2619.939813 2494.692697 2496.930799 2025.84484 2659.46279 1144.650827 2.42318396 2.456414776 2.466246935 2.731687486 2.28885504 2.179435544 2.181390814 1.769836524 2.323383453 1 10.16069186 -9.170953301 0.830834526 0.965047425 2.3297589 0 0.467650076 0.229404593 0.274838784 0.198715978 0.051481655 6.75E-10 9.170953301 1.364711475 MLGEDS(ph)DEEEEMDTSERK ddPTM_HeLa_CUDC101_4h_R1 2 MLGEDSDEEEEMDTSERK 18 1 A0A087X0M4;Q9BWU0;A0A087WWF4;H7C256 A0A087X0M4 SLC4A1AP Kanadaptin 1 0 MLGEDS(1)DEEEEMDTSERK;MLGEDS(1)DEEEEMDTSERK ; 150.61 3.31E-05 72904000 3598.3 3264.9 2946.8 3247.1 2883.3 2926 3243.3 2973.1 3633.9 2925.8 TRUE FALSE FALSE 3176.512729 3365.487699 3106.112922 3379.530773 2670.604703 2870.191425 3368.395167 3311.545686 3484.109104 2908.397211 1.092186692 1.157162332 1.067980986 1.16199079 0.918239329 0.986863628 1.158162012 1.138615342 1.197948165 1 11.5060086 -9.170927299 0.996095954 1.001562058 1.082734986 0 0.097231095 0.859173408 1.575757022 0.047106391 0.014494784 6.75E-10 9.170927299 0.081172928 IPMTPTSSFVSPPPPTAS(ph)PHSNR ddPTM_HeLa_CUDC101_4h_R1 1 IPMTPTSSFVSPPPPTASPHSNR 23 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 IPMTPTSSFVSPPPPT(0.205)AS(0.707)PHS(0.087)NR 104.6 1.77E-05 87953000 289.88 184.32 250.02 221.55 316.99 298.86 295.64 326.75 391.57 444.17 TRUE FALSE FALSE 255.9007058 189.9986807 263.5368375 230.5857666 293.6062792 293.1597434 307.0429338 363.9458992 375.4293189 441.5280571 0.579579716 0.430320741 0.596874498 0.522244879 0.664977626 0.663966284 0.695409791 0.82428714 0.850295497 1 8.786361307 -9.16998341 0.937241778 0.998166016 0.617873716 0.539129362 0.108849205 0.279519416 0.445384772 0.070432579 0.020498329 6.76E-10 9.16998341 -0.3802923 GLEGNANS(ph)PAHLR ddPTM_HeLa_CUDC101_4h_R1 1 GLEGNANSPAHLR 13 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 GLEGNANS(1)PAHLR 121.92 0.0020179 23253000 2606.4 2066.5 2741.7 1961.3 1731 2608.9 2187.6 2362.5 2663.2 3154.2 TRUE FALSE FALSE 2300.881743 2130.166416 2889.924595 2041.290291 1603.307579 2559.139579 2271.976465 2631.43745 2553.421769 3135.438678 0.733830886 0.679383855 0.921697055 0.65103818 0.511350322 0.816198255 0.724611992 0.839256551 0.814374648 1 11.61445159 -9.169938243 0.612697308 1.032728812 0.72571764 0.180990965 0.120549502 0.731417823 0.421703508 0.123424119 0.024411022 6.76E-10 9.169938243 -0.307011171 EFK(ac)EVLK ddPTM_HeLa_CUDC101_4h_R1 1 EFKEVLK 7 1 P61086;D6RDM7;P61086-2;P61086-3;D6RFX1 P61086 UBE2K Ubiquitin-conjugating enzyme E2 K 0 1 EFK(1)EVLK 101.64 0.016722 885790 563.36 599.38 417.95 625.89 710.73 813.63 584.37 739.25 558.5 532.93 FALSE TRUE FALSE 497.3237948 617.8461874 440.5456412 651.4164995 658.3008639 798.1113633 606.9093467 823.4032318 535.4783936 529.7601087 0.938771694 1.166275409 0.831594592 1.229644303 1.242639552 1.5065524 1.145630516 1.554294516 1.010794103 1 9.049195402 -5.949308134 2.202803826 0.978541087 1.367452135 0.626912392 0.135494734 0.131036319 1.28154751 0.018385886 0.03625166 1.12E-06 5.949308134 0.388911048 EFLEDYDDDRDDPK ddPTM_HeLa_CUDC101_4h_R1 2 EFLEDYDDDRDDPK 14 1 P49756 P49756 RBM25 RNA-binding protein 25 0 0 ; ; 115.92 0.0026641 113290000 14807.4 11623.4 11147.9 10988.3 10611.1 11391.2 10485 9497 11884 13357.6 FALSE FALSE TRUE 13071.69902 11981.50318 11750.58919 11436.45037 9828.340293 11173.93184 10889.40996 10578.10009 11394.13649 13278.1484 0.984451945 0.902347437 0.884956911 0.86129858 0.740189068 0.841527862 0.820100035 0.796654757 0.85811185 1 13.69676636 -6.769149627 1.014105698 0.996377077 0.804551539 0.511041807 0.052795728 0.104551669 0.214340632 0.005571614 0.008617133 1.70E-07 6.769149627 -0.191825538 EFLEDYDDDRDDPKYYR ddPTM_HeLa_CUDC101_4h_R1 4 EFLEDYDDDRDDPKYYR 17 2 P49756 P49756 RBM25 RNA-binding protein 25 0 0 ;;; ;;; 95.854 0.002165 136605000 22916.2 21916.2 22088.1 21654.6 27568.5 22957.9 23913.4 26127 25407.2 13242 FALSE FALSE TRUE 20229.99777 22591.41214 23282.2495 22537.76819 25534.82668 22520.01631 24835.74785 29101.19207 24359.90446 13163.236 1.536855966 1.716250636 1.76873297 1.712175349 1.93985937 1.710826754 1.886750937 2.210793158 1.850601514 1 13.68422658 -9.53196759 0.137645793 4.25E-11 2.362163804 0.056017618 0.289329239 3.673113409 0.125908779 1.835508033 0.52673536 2.94E-10 9.53196759 2.362163804 EFLHAQEEVKR ddPTM_HeLa_CUDC101_4h_R1 2 EFLHAQEEVKR 11 1 P43686 P43686 PSMC4 26S protease regulatory subunit 6B 0 0 ; ; 86.882 0.020005 11440600 10082 9554.2 10089.1 9529 10521.3 9603.4 9157.6 9625.8 10493.3 9389.9 FALSE FALSE TRUE 8900.203243 9848.553577 10634.54726 9917.633808 9745.16466 9420.231145 9510.8117 10721.56216 10060.76173 9334.048457 0.953520146 1.055121325 1.139328482 1.062522211 1.04404479 1.009233152 1.018937468 1.148650793 1.077856171 1 13.18828724 -7.194816076 6.447279233 0.978102872 1.066098218 0.117386469 0.054077147 0.162864721 12.86439944 0.007630436 0.009346483 6.39E-08 7.194816076 0.087995346 VEVTEFEDIKS(ph)GYR ddPTM_HeLa_CUDC101_4h_R1 1 VEVTEFEDIKSGYR 14 1 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 1 0 VEVTEFEDIKS(1)GYR 85.563 0.010908 7893700 2586.3 2185.3 2208.3 2423.1 2078.1 2228.4 2278.1 2359.6 2299.8 2859.4 TRUE FALSE FALSE 2283.137835 2252.626503 2327.687378 2521.924492 1924.802703 2185.896983 2365.96708 2628.207326 2205.001271 2842.392162 0.803245191 0.792510806 0.818918448 0.887254238 0.677177037 0.769034271 0.832385873 0.924646276 0.775755471 1 11.4728899 -9.169723352 0.719022486 1.013049928 0.808028261 0 0.093418425 0.483037753 0.408978127 0.059022959 0.013368736 6.77E-10 9.169723352 -0.205021666 NRPLLDFVSMEELNDMDDYDS(ph)EDDNDWRPTVVK ddPTM_HeLa_CUDC101_4h_R1 1 NRPLLDFVSMEELNDMDDYDSEDDNDWRPTVVK 33 2 A0A0U1RRH6;O94880 A0A0U1RRH6 PHF14 PHD finger protein 14 1 0 NRPLLDFVSMEELNDMDDY(0.127)DS(0.873)EDDNDWRPTVVK 98.133 1.54E-12 11367000 1256.1 1156.5 1185.8 791.16 1133.8 971.06 1021.2 1035.2 1239.6 580.2 TRUE FALSE FALSE 1108.861862 1192.130394 1249.907935 823.4269245 1050.161833 952.5386484 1060.588026 1153.042984 1188.503163 576.7489446 1.922607527 2.066983226 2.1671612 1.427704259 1.82083009 1.651565482 1.838907615 1.999211259 2.060694128 1 9.171799649 -9.169057694 0.86535519 0.986865726 1.855321484 0 0.380096193 0.270084148 0.356782045 0.151111764 0.040806144 6.78E-10 9.169057694 0.868455758 EFNAEVHR ddPTM_HeLa_CUDC101_4h_R1 4 EFNAEVHR 8 0 A0A2R8Y6J3;P46777 A0A2R8Y6J3 RPL5 60S ribosomal protein L5 0 0 ;;; ;;; 143.37 0.0039178 67001400 30598.2 21775.7 18798.8 23041.6 19181.1 22207 18466.1 18426.5 19473.3 20438.3 FALSE FALSE TRUE 27011.52538 22446.58351 19815.11999 23981.33604 17766.14847 21783.43847 19178.34366 20524.09828 18670.60233 20316.73208 1.329521169 1.104832382 0.975310395 1.180373691 0.874458963 1.072192043 0.943967937 1.010206671 0.918976647 1 14.31038074 -6.939894514 5.901849748 1.158641787 1.012067371 0 0.129927281 0.248967617 17.37737332 0.022530417 0.029651622 1.15E-07 6.939894514 -0.146574415 EFNAEVHRK ddPTM_HeLa_CUDC101_4h_R1 1 EFNAEVHRK 9 1 A0A2R8Y6J3;P46777 A0A2R8Y6J3 RPL5 60S ribosomal protein L5 0 0 76.1 0.035872 9125300 4827.8 3609.2 4402.4 4620.9 4039.1 4030.2 4402.1 3944.6 4674.9 3200.7 FALSE FALSE TRUE 4261.892602 3720.395174 4640.407061 4809.360275 3741.14364 3953.33065 4571.890472 4393.637319 4482.198643 3181.662094 1.339517672 1.169324417 1.458485195 1.511587382 1.175845684 1.242536301 1.436950354 1.380925186 1.408760111 1 11.63556491 -9.348082811 0.49902053 0.91337759 1.353276458 0 0.167829067 0.966423691 0.311105855 0.212053852 0.029525412 4.49E-10 9.348082811 0.439898868 EFNFEK(ac)WNAR ddPTM_HeLa_CUDC101_4h_R1 1 EFNFEKWNAR 10 1 P78347-2;P78347-4;P78347-3;P78347;A0A494C1K3 P78347-2 GTF2I General transcription factor II-I 0 1 EFNFEK(1)WNAR 85.963 0.032509 398380 0 0 81.937 0 0 0 146.57 0 0 0 FALSE TRUE FALSE 0 0 86.36676207 0 0 0 152.223254 0 0 0 0 EFNK(ac)YDTDGSK ddPTM_HeLa_CUDC101_4h_R1 1 EFNKYDTDGSK 11 1 P61158;B4DXW1 P61158 ACTR3 Actin-related protein 3 0 1 EFNK(1)YDTDGSK 168.85 1.35E-18 0 545.69 276.97 246.46 328.53 626.44 748.94 559.93 528.93 537.59 490.52 FALSE TRUE FALSE 481.7250454 285.5031174 259.7843731 341.9288734 580.2287692 734.6552173 581.5266877 589.1412532 515.4303127 487.6023652 0.98794649 0.585524472 0.532779149 0.701245313 1.189962992 1.506668691 1.192624829 1.208241172 1.057070985 1 8.929561314 -5.587241318 6.832923515 0.903965286 1.300832596 0.552579375 0.195686502 0.160134062 13.63314912 0.032810646 0.066085691 2.59E-06 5.587241318 0.39686731 EFPGFLENQKDPLAVDK ddPTM_HeLa_CUDC101_4h_R1 2 EFPGFLENQKDPLAVDK 17 1 P60903 P60903 S100A10 Protein S100-A10 0 0 ; ; 119.45 0.00039034 37454000 2710.4 2641.8 2112.56 2151.89 2546.7 2319.5 2152.6 2909.3 2094.1 2419.91 FALSE FALSE TRUE 2392.691021 2723.190727 2226.771384 2239.653375 2358.835015 2275.259402 2235.626503 3240.482952 2007.780312 2405.516268 0.994668401 1.132060823 0.925693754 0.931048942 0.980594081 0.945850765 0.929374926 1.347104984 0.834656717 1 11.23213084 -4.255542187 24.86258151 0.989219157 1.347105152 0.687759586 0.075759496 209.2802498 882298.4281 0.00783668 0.094356321 5.55E-05 4.255542187 0.357885995 S(ph)TPPPNNLVNPVQELETER ddPTM_HeLa_CUDC101_4h_R1 3 STPPPNNLVNPVQELETER 19 0 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 S(0.5)T(0.5)PPPNNLVNPVQELETER;S(0.5)T(0.5)PPPNNLVNPVQELETER;S(0.767)T(0.233)PPPNNLVNPVQELETER ;; 126.07 4.75E-05 7069600 2506.1 2239.1 2114.4 1964.32 2157.22 2317.32 2323.62 1883.04 2171.46 2646.69 TRUE FALSE FALSE 2212.338757 2308.084017 2228.71086 2044.43346 1998.086178 2273.120982 2413.242802 2097.397662 2081.9515 2630.94737 0.840890541 0.877282474 0.847113433 0.777071211 0.759455016 0.863993331 0.917252405 0.79720244 0.791331489 1 11.36136667 -9.168999348 0.547297337 1.026395853 0.830338677 0 0.078510839 0.634201337 0.280576585 0.064166257 0.011758794 6.78E-10 9.168999348 -0.196057177 YTGEEDGAGGHS(ph)PAPPQTEECLR ddPTM_HeLa_CUDC101_4h_R1 3 YTGEEDGAGGHSPAPPQTEECLR 23 0 J3KS37;O94762-4;O94762;J3KSV9 J3KS37 RECQL5 ATP-dependent DNA helicase Q5 1 0 Y(0.001)T(0.002)GEEDGAGGHS(0.996)PAPPQTEECLR;YTGEEDGAGGHS(1)PAPPQTEECLR;YTGEEDGAGGHS(1)PAPPQTEECLR ;; 115.92 1.80E-06 130088000 5139.74 4323.39 4469.9 4374.38 4510.65 4150.99 4621.17 3802.53 4400.9 1625 TRUE FALSE FALSE 4537.267469 4456.588521 4711.556315 4552.786124 4177.908336 4071.816782 4799.410075 4235.394645 4219.493039 1615.334428 2.808871891 2.758926229 2.916768338 2.818478976 2.586404564 2.520726799 2.971155689 2.621992432 2.612148275 1 10.65761717 -9.168711199 0.713294227 0.875916852 2.76967248 0.096815075 0.512404783 0.132031185 0.109706401 0.14841758 0.033417347 6.78E-10 9.168711199 1.893755628 S(ph)LQTLPTDSSTFDTDTFCPPRPK ddPTM_HeLa_CUDC101_4h_R1 1 SLQTLPTDSSTFDTDTFCPPRPK 23 1 B0QY95;Q9NQG6 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 0 S(0.985)LQT(0.015)LPTDSSTFDTDTFCPPRPK 165.77 1.14E-16 0 1042.3 879.62 970.07 718.96 1031.3 1059.7 909.78 628.92 863.67 775.86 TRUE FALSE FALSE 920.123174 906.7200496 1022.514919 748.2822964 955.2230536 1039.487988 944.8705194 700.5137106 828.069157 771.2451502 1.193035929 1.175657376 1.325797534 0.970226258 1.238546594 1.347804894 1.22512345 0.908289291 1.073678268 1 9.591045702 -9.16846258 0.810713053 0.994083093 1.181817384 0.131579279 0.133399979 0.846054197 0.956859209 0.099748877 0.025323942 6.78E-10 9.16846258 0.18773429 RAT(ph)LPQAAMGVAT(ph)VER ddPTM_HeLa_CUDC101_4h_R1 2 RATLPQAAMGVATVER 16 1 Q8IXV7 Q8IXV7 KLHDC8B Kelch domain-containing protein 8B 2 0 RAT(1)LPQAAMGVAT(1)VER;RAT(1)LPQAAMGVAT(1)VER ; 62.916 0.035958 15394900 2078 1694.15 1819.09 1637.18 1967.68 1981.69 1889.93 1163.39 2179.3 3285.3 TRUE FALSE FALSE 1834.41999 1746.344753 1917.435508 1703.951277 1822.528167 1943.892565 1962.825233 1295.825615 2089.468332 3265.758889 0.561713235 0.534743933 0.587133212 0.521762731 0.558071869 0.595234563 0.601031889 0.396791576 0.63981096 1 11.67320257 -9.168443808 0.581364455 1.063526373 0.537870163 0.292402991 0.123820395 0.2401299 0.122377647 0.067395804 0.01285301 6.79E-10 9.168443808 -0.52565621 QGMS(ph)MRESPVSAPLEGLICR ddPTM_HeLa_CUDC101_4h_R1 1 QGMSMRESPVSAPLEGLICR 20 1 A0A088AWL3;O75376;O75376-2 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 QGMS(0.95)MRES(0.045)PVS(0.006)APLEGLICR 57.171 0.017315 3609400 551.94 568.88 427.36 435.87 521.1 450.23 380.24 406.95 525.58 274.43 TRUE FALSE FALSE 487.2424299 586.4065185 450.4643743 453.6466626 482.6594912 441.6426129 394.9059842 453.2755431 503.9153699 272.7976782 1.78609449 2.149602308 1.651276423 1.662941802 1.769294718 1.618938313 1.447614902 1.661581382 1.847212826 1 8.091687555 -9.168345215 0.935734906 1.003262051 1.715941197 0 0.308106193 0.257345304 0.408735172 0.1213778 0.035343736 6.79E-10 9.168345215 0.712679147 EFVISDRK ddPTM_HeLa_CUDC101_4h_R1 1 EFVISDRK 8 1 H3BT58;Q14019 H3BT58 COTL1 Coactosin-like protein 0 0 103.83 0.016032 18341000 3679.9 3417.4 3212.5 3309.8 3730 3723.2 3508.2 3317.8 3398.9 2524.9 FALSE FALSE TRUE 3248.5477 3522.686043 3386.177467 3444.78795 3454.845331 3652.186163 3643.512449 3695.484941 3258.795903 2509.881783 1.294303072 1.403526679 1.349138231 1.372490121 1.376497234 1.455122783 1.451666957 1.472374104 1.298386213 1 11.2934037 -9.224824633 0.251480202 0.766591902 1.492618408 0.424005756 0.098555116 0.609078158 0.056003404 0.139941472 0.027661145 5.96E-10 9.224824633 0.726026506 EFVPGVK(ac)YGNI ddPTM_HeLa_CUDC101_4h_R1 1 EFVPGVKYGNI 11 1 Q9BPZ3;D6R9Y1 Q9BPZ3 PAIP2 Polyadenylate-binding protein-interacting protein 2 0 1 EFVPGVK(1)YGNI 86.624 0.029449 220060 205.07 295.27 70.671 216.25 274.73 184.78 197.65 314.45 164.27 0 FALSE TRUE FALSE 181.0320055 304.3669187 74.49168803 225.0696097 254.4637152 181.2556294 205.2734267 350.2457169 157.4987211 0 0 IACEEEFS(ph)DS(ph)EEEGEGGRK ddPTM_HeLa_CUDC101_4h_R1 4 IACEEEFSDSEEEGEGGRK 19 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 2 0 IACEEEFS(1)DS(1)EEEGEGGRK;IACEEEFS(1)DS(1)EEEGEGGRK;IACEEEFS(1)DS(1)EEEGEGGRK;IACEEEFS(1)DS(1)EEEGEGGRK ;;; 72.916 0.0061843 572658000 16644.2 14565.4 14020.6 13222.6 16583.2 14285.6 13749.4 14754.5 15030.2 5809.08 TRUE FALSE FALSE 14693.19211 15014.14271 14778.59605 13761.87478 15359.89037 14013.12598 14279.71896 16434.09264 14410.64879 5774.527334 2.544483948 2.600064359 2.559273719 2.383203678 2.659938985 2.426713941 2.472881006 2.845963261 2.495554694 1 12.49548715 -9.167168946 0.629741984 0.826367191 2.580006738 0.020151046 0.477622268 0.149482383 0.092147837 0.146126314 0.029632064 6.81E-10 9.167168946 1.753639547 TVTNAVVTVPAYFNDS(ph)QR ddPTM_HeLa_CUDC101_4h_R1 1 TVTNAVVTVPAYFNDSQR 18 0 P11142;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 0 TVTNAVVTVPAYFNDS(0.999)QR 110.34 0.00047805 11221000 948.77 761.5 834.49 860.5 861.83 973.75 823.34 595.52 797.54 1144 TRUE FALSE FALSE 837.5566188 784.9609124 879.6050536 895.5949094 798.2545179 955.1773411 855.0964996 663.3115896 764.6650636 1137.195437 0.73651071 0.690260343 0.773486267 0.787547048 0.701950159 0.839941236 0.751934515 0.583287242 0.67241306 1 10.1512645 -9.16686395 0.664279551 1.024689317 0.734700393 0 0.120349427 0.397818222 0.278737329 0.066101474 0.014013256 6.81E-10 9.16686395 -0.289988924 ERECS(ph)PS(ph)SPLPPLPEDEEGSEVTNSK ddPTM_HeLa_CUDC101_4h_R1 1 ERECSPSSPLPPLPEDEEGSEVTNSK 26 1 Q96GY3 Q96GY3 LIN37 Protein lin-37 homolog 2 0 ERECS(0.983)PS(0.641)S(0.376)PLPPLPEDEEGSEVTNSK 123.51 4.18E-10 20768000 2557.8 2269.4 1938.2 2325.7 2414.7 2192.7 1991.2 2188.5 1983.4 755.24 TRUE FALSE FALSE 2257.978561 2339.317524 2042.984955 2420.552099 2236.572392 2150.877901 2068.001251 2437.629994 1901.643413 750.7477989 3.007639269 3.115983194 2.721266659 3.224188072 2.979126139 2.864980629 2.754588497 3.246935918 2.532998985 1 9.55218453 -9.166474085 0.673111382 0.823698003 3.005724992 0.353933513 0.498604651 0.145792669 0.105467952 0.183477899 0.03935905 6.82E-10 9.166474085 2.182026989 VAAS(ph)PKS(ph)PTAALNESLVECPK ddPTM_HeLa_CUDC101_4h_R1 1 VAASPKSPTAALNESLVECPK 21 1 Q53EZ4 Q53EZ4 CEP55 Centrosomal protein of 55 kDa 2 0 VAAS(0.996)PKS(0.951)PT(0.049)AALNES(0.003)LVECPK 62.739 0.015719 7167900 2644.6 2408.7 2181.8 2210.3 2389.9 2317.3 1926.1 2064.3 2539.3 1405.3 TRUE FALSE FALSE 2334.603997 2482.909192 2299.754708 2300.445588 2213.601838 2273.101363 2000.390322 2299.291568 2434.628979 1396.941213 1.671225657 1.777389892 1.646278803 1.646773369 1.584606294 1.627199013 1.431978886 1.645947264 1.742828514 1 10.44805559 -9.165856007 0.841335213 0.98612728 1.627632307 0 0.241131142 0.17069304 0.211153951 0.069721019 0.018401337 6.83E-10 9.165856007 0.641505027 EGALCEENMR ddPTM_HeLa_CUDC101_4h_R1 1 EGALCEENMR 10 0 P13639 P13639 EEF2 Elongation factor 2 0 0 117.01 0.03181 36159000 2826.6 2190.9 2416.4 2103 2456 2387.1 2423.2 2067.3 2398.7 1274.1 FALSE FALSE TRUE 2495.270233 2258.399032 2547.037893 2188.76943 2274.825773 2341.570045 2516.663636 2302.633076 2299.824571 1266.521597 1.970175826 1.783150827 2.011049713 1.728173792 1.796120792 1.848819674 1.987067289 1.81807644 1.815858945 1 10.30665596 -9.269870273 0.7870883 0.942755922 1.875293681 0.060420144 0.265650606 0.148209431 0.148858826 0.088455996 0.019062036 5.37E-10 9.269870273 0.932537758 EGDGVYYNELETR ddPTM_HeLa_CUDC101_4h_R1 2 EGDGVYYNELETR 13 0 Q8N7H5-3;Q8N7H5-2;Q8N7H5 Q8N7H5-3 PAF1 RNA polymerase II-associated factor 1 homolog 0 0 ; ; 162.93 0.00022125 11677200 1694.48 1223 1413.18 1489.38 1563.26 1428.66 1278.71 1386.41 1364.86 1649.64 FALSE FALSE TRUE 1495.855623 1260.67918 1489.580785 1550.123354 1447.941424 1401.410691 1328.030273 1544.23331 1308.599893 1639.827868 0.912202831 0.768787508 0.908376309 0.945296384 0.882983789 0.854608412 0.809859558 0.941704517 0.798010522 1 10.67932867 -8.406831546 0.843617776 0.991161157 0.874398795 0 0.080506497 0.369863665 0.550503966 0.020891947 0.01171677 3.92E-09 8.406831546 -0.116762362 RRT(ph)QELR ddPTM_HeLa_CUDC101_4h_R1 1 RRTQELR 7 2 Q9Y283 Q9Y283 INVS Inversin 1 0 RRT(1)QELR 94.262 0.0022088 0 377.16 302.21 295.84 312.65 343.68 284.31 213.81 255.91 449.78 10711 TRUE FALSE FALSE 332.9498765 311.5207319 311.8340053 325.4012184 318.3274111 278.8872604 222.0567233 285.04176 431.239878 10647.2905 0.031270855 0.029258217 0.029287639 0.03056188 0.029897504 0.026193261 0.020855703 0.026771295 0.040502312 1 13.37819872 -9.165702985 0.631783075 1.106999831 0.010683618 0 0.296220112 0.067170859 0.041761492 0.041107998 0.008373378 6.83E-10 9.165702985 -1.096316213 EGDNVNYDWIHWDPEHSYEFK ddPTM_HeLa_CUDC101_4h_R1 2 EGDNVNYDWIHWDPEHSYEFK 21 0 E9PGM4;Q04446 E9PGM4 GBE1 "1,4-alpha-glucan-branching enzyme" 0 0 ; ; 157.14 2.58E-07 99901000 17410.6 12829 13664.5 14003 16585 15898.9 13681.4 11889.2 15454.3 12931.7 FALSE FALSE TRUE 15369.75586 13224.24628 14403.2442 14574.10287 15361.55759 15595.65497 14209.09618 13242.61847 14817.26721 12854.78167 1.195645033 1.028741415 1.120458096 1.133749544 1.195007273 1.213218191 1.105354921 1.030170625 1.152665801 1 13.65001749 -9.504006702 1.194646127 0.998409582 1.136203448 0 0.076435823 0.407786928 1.021963441 0.047110099 0.010866463 3.13E-10 9.504006702 0.137793866 S(ph)RSPESQVIGENTK ddPTM_HeLa_CUDC101_4h_R1 1 SRSPESQVIGENTK 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 S(0.375)RS(0.251)PES(0.375)QVIGENTK 144.7 0.0019261 29754000 4565.9 3796.7 4034.4 3614.8 3841.7 3983.3 3933.7 5239.5 3887.6 5400.4 TRUE FALSE FALSE 4030.692123 3913.671827 4252.511867 3762.227168 3558.305445 3907.325189 4085.424127 5835.943501 3727.351483 5368.278181 0.750835182 0.729036703 0.792155645 0.700825673 0.662839243 0.727854455 0.76103063 1.087116447 0.694329049 1 12.39024372 -9.164518531 0.831482915 1.005759546 0.766476029 0 0.144745681 0.540948409 0.650997461 0.082004084 0.021437052 6.85E-10 9.164518531 -0.239283516 S(ph)PATSAGPELAGLPR ddPTM_HeLa_CUDC101_4h_R1 1 SPATSAGPELAGLPR 15 0 A1L020 A1L020 MEX3A RNA-binding protein MEX3A 1 0 S(0.999)PAT(0.001)SAGPELAGLPR 90.476 0.011042 4777700 245.08 231.28 156.3 264.39 182.08 182.98 231.87 268.92 172.08 319.02 TRUE FALSE FALSE 216.3520939 238.4054627 164.7500508 275.172967 168.6483212 179.4899614 240.8133036 299.5327658 164.9867896 317.1224549 0.682235176 0.751777299 0.519515563 0.86771833 0.531808198 0.565995749 0.759370079 0.944533448 0.520262085 1 8.308896225 -9.163775721 0.741182983 1.01740403 0.692943102 0 0.198516193 0.579699057 0.529603421 0.113496423 0.026638469 6.86E-10 9.163775721 -0.324460929 S(ph)KS(ph)S(ph)AT(ph)RSKK ddPTM_HeLa_CUDC101_4h_R1 1 SKSSATRSKK 10 3 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 4 0 S(1)KS(1)S(1)AT(0.99)RS(0.011)KK 61.435 0.038784 3198000 64.974 0 0 123.69 0 0 0 0 0 151.93 TRUE FALSE FALSE 57.35784621 0 0 128.7346128 0 0 0 0 0 151.0263136 0.379787104 0 0 0.852398564 0 0 0 0 0 1 7.238656125 -9.163770739 0.282378884 1.418493848 1.34E-15 0 0.404954924 1.987492732 0.229198061 0.964145793 0.185091441 6.86E-10 9.163770739 -1.418493848 DFMLS(ph)FSR ddPTM_HeLa_CUDC101_4h_R1 2 DFMLSFSR 8 0 Q6STE5-2;Q6STE5 Q6STE5-2 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 1 0 DFMLS(1)FSR;DFMLS(1)FSR ; 124.59 0.0065934 142813000 5036 4220.2 4074.9 4795.4 4686.4 4485.2 4180.9 3760.7 5154.4 1325.23 TRUE FALSE FALSE 4445.687714 4350.21936 4295.20142 4990.977139 4340.693609 4399.652283 4342.158714 4188.802887 4941.93345 1317.347473 3.374726718 3.302256579 3.260492397 3.788656555 3.29502557 3.339781169 3.296137733 3.179725147 3.751427434 1 10.36342022 -9.163508523 0.652441803 0.768126437 3.396869444 0 0.864593605 0.126797558 0.085241194 0.189109096 0.039658863 6.86E-10 9.163508523 2.628743007 VSGTLDTPEKTVDS(ph)QGPTPVCTPTFLER ddPTM_HeLa_CUDC101_4h_R1 1 VSGTLDTPEKTVDSQGPTPVCTPTFLER 28 1 H7BZL0;Q9BYG3;C9J808 H7BZL0 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 VSGTLDT(0.026)PEKT(0.303)VDS(0.633)QGPT(0.032)PVCT(0.005)PT(0.001)FLER 79.021 9.77E-06 81139000 2612.8 2320.7 2372.9 1848.9 2972.2 2190.9 1840.1 1854.4 3219.2 1607.5 TRUE FALSE FALSE 2306.531545 2392.198016 2501.186152 1924.306134 2752.946727 2149.112233 1911.073273 2065.4974 3086.503213 1597.938519 1.443441984 1.497052602 1.565258064 1.204242911 1.72281142 1.344927986 1.195961704 1.292601296 1.931553172 1 10.64199619 -9.163012193 0.875772369 0.995583499 1.410812255 0 0.327028012 0.405653798 0.552523294 0.108749251 0.029933808 6.87E-10 9.163012193 0.415228756 RVS(ph)GPDPKPGSNCS(ph)PAQSVLSEVPSVPTNGMAK ddPTM_HeLa_CUDC101_4h_R1 1 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 2 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 2 0 RVS(0.59)GPDPKPGS(0.343)NCS(0.467)PAQS(0.13)VLS(0.096)EVPS(0.323)VPT(0.051)NGMAK 44.747 0.015321 33684000 3517.7 2903.4 3181.2 3276.7 3261.5 3402.8 2618.6 2151 3028 2508.9 TRUE FALSE FALSE 3105.360538 2992.850313 3353.185295 3410.337989 3020.905643 3337.897259 2719.600279 2395.861145 2903.184558 2493.976951 1.245144041 1.200031264 1.344513346 1.367429634 1.211280498 1.338383363 1.090467287 0.960658896 1.164078344 1 11.28423242 -9.162230604 0.854017696 0.996244864 1.227930544 0.10609097 0.126916595 0.596998807 0.766344844 0.088455859 0.023792637 6.88E-10 9.162230604 0.231685679 EGDVLTLLESER ddPTM_HeLa_CUDC101_4h_R1 4 EGDVLTLLESER 12 0 P62857 P62857 RPS28 40S ribosomal protein S28 0 0 ;;; ;;; 234.67 3.91E-42 193552000 11159.3 10423 9981.5 9711 10982.6 9920.1 9403.1 9991.8 10592.7 10621.2 FALSE FALSE TRUE 9851.22377 10744.12028 10521.13008 10107.05655 10172.43548 9730.890621 9765.780717 11129.22612 10156.06442 10558.02463 0.933055578 1.017625991 0.996505544 0.9572867 0.963479044 0.921658261 0.924962866 1.054101171 0.961928465 1 13.36605232 EGDYVLFHHEGGVDVGDVDAK ddPTM_HeLa_CUDC101_4h_R1 3 EGDYVLFHHEGGVDVGDVDAK 21 0 P53396;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 ;; ;; 111.01 1.77E-05 104461200 14976.8 12967.1 14154.4 13394.1 15035.8 13542.1 12966.9 13614.2 15255.7 14134.5 FALSE FALSE TRUE 13221.24221 13366.60098 14919.62968 13940.36929 13926.63899 13283.80701 13467.03768 15163.9855 14626.85359 14050.42737 0.940985058 0.951330563 1.061863052 0.992166923 0.991189707 0.945437933 0.958478865 1.079254396 1.04102553 1 13.77832639 EGEEEEENTEEPPQGEEEESMETQE ddPTM_HeLa_CUDC101_4h_R1 2 EGEEEEENTEEPPQGEEEESMETQE 25 0 B4DY09;Q12905 B4DY09 ILF2 Interleukin enhancer-binding factor 2 0 0 ; ; 112.36 2.19E-07 6317000 6842.1 6370 5907.4 6611 6859.9 7083.2 5619.1 6048 6560.5 6476.4 FALSE FALSE TRUE 6040.07941 6566.25215 6226.771913 6880.625155 6353.858844 6948.099761 5835.830569 6736.479873 6290.073413 6437.878085 0.93820966 1.019940431 0.967208734 1.068772205 0.986949234 1.079253082 0.906483548 1.04638202 0.977041399 1 12.65236954 -7.238593733 24.47214833 0.970821226 1.008985946 0.113478676 0.049720856 987.0045419 1057275.761 0.008010587 0.009807065 5.77E-08 7.238593733 0.03816472 EGEELVMDEEAYVLYHR ddPTM_HeLa_CUDC101_4h_R1 4 EGEELVMDEEAYVLYHR 17 0 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 0 0 ;;; ;;; 191.89 9.72E-12 5063300 9995.2 8602.88 7150.85 7765.42 9204.29 8623.43 7830.08 7204.63 9520.8 9101.7 FALSE FALSE TRUE 8823.577808 8867.924536 7537.446581 8082.127393 8525.307864 8458.95244 8132.088808 8024.775957 9128.348594 9047.562684 0.975243623 0.980145134 0.833091391 0.893293329 0.942276739 0.934942673 0.898815415 0.886954447 1.008929025 1 13.14331348 -6.894563403 9.696341 0.987746195 0.90175865 0.707787818 0.0291817 0.135051195 11.50247077 0.004829241 0.006350536 1.27E-07 6.894563403 -0.085987544 VGPCSS(ph)PPAAR ddPTM_HeLa_CUDC101_4h_R1 3 VGPCSSPPAAR 11 0 A0A0J9YYG8;Q8TDM6-4;Q8TDM6;A0A0A0MSL1;Q8TDM6-2 A0A0J9YYG8 DLG5 Disks large homolog 5 1 0 VGPCS(0.052)S(0.948)PPAAR;VGPCS(0.055)S(0.945)PPAAR;VGPCS(0.053)S(0.947)PPAAR ;; 102.05 0.011831 113307000 10657.1 9434.7 8874.8 9305 9549.3 8734.2 8753.7 8244.1 9408.9 6275.8 TRUE FALSE FALSE 9407.890893 9725.371924 9354.598533 9684.49812 8844.867164 8567.609687 9091.333141 9182.57502 9021.06116 6238.471262 1.508044278 1.558935116 1.499501743 1.552383222 1.417794006 1.37335083 1.457301438 1.471927117 1.446037143 1 12.60697682 -9.160948612 0.813390141 0.985502275 1.480376529 0.089438556 0.145819918 0.16259713 0.185934831 0.050474924 0.012979488 6.90E-10 9.160948612 0.494874254 IS(ph)TKRIIS(ph)IQY(ph)LDLET(ph)S(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ISTKRIISIQYLDLETSK 18 2 H0YLS3 H0YLS3 USP8 5 0 IS(0.758)T(0.31)KRIIS(0.932)IQY(1)LDLET(1)S(1)K 49.266 0.02974 17037000 971.22 867.83 726.66 689.29 1036.8 810.14 852.7 1038.9 996.43 1037.4 TRUE FALSE FALSE 857.3750639 894.5668137 765.9454376 717.4022256 960.3173296 794.6879293 885.5889246 1157.164177 955.3567337 1031.229499 0.83141053 0.867475974 0.742749736 0.695676594 0.931235317 0.770621797 0.858769969 1.122120903 0.926424947 1 10.01014972 -9.160307616 0.875683601 1.001474752 0.84410198 0.117598718 0.113216071 0.755137873 1.0293202 0.076645744 0.02116734 6.91E-10 9.160307616 -0.157372772 ICRDPQT(ph)PVLQTK ddPTM_HeLa_CUDC101_4h_R1 3 ICRDPQTPVLQTK 13 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 ICRDPQT(0.978)PVLQT(0.022)K;ICRDPQT(1)PVLQTK;ICRDPQT(1)PVLQTK ;; 151.3 0.0049503 125969000 14300.8 13000.3 12694.9 13039 14871.3 13309.4 11035.6 4181.3 13096.7 7480.7 TRUE FALSE FALSE 12624.4819 13400.82383 13381.22469 13570.78678 13774.27383 13055.54537 11461.24679 4657.282291 12556.84848 7436.204464 1.697705054 1.802105348 1.799469711 1.82496149 1.85232586 1.755673265 1.541276446 0.62629831 1.688609901 1 12.86035072 -9.159978649 0.908013028 0.999508987 1.641442333 0 0.402595429 0.551509515 0.818772476 0.231206653 0.066122568 6.92E-10 9.159978649 0.641933346 EGEFVAQFK ddPTM_HeLa_CUDC101_4h_R1 1 EGEFVAQFK 9 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 0 121.05 0.030159 8647500 789.01 772.33 847.38 808.61 759.57 694.18 745.13 736.81 725.76 1313.1 FALSE FALSE TRUE 696.5234439 796.1245719 893.191926 841.5886109 703.5380344 680.9396731 773.8699137 820.6854721 695.8438656 1305.289623 0.533616013 0.609921781 0.684286392 0.644752395 0.538989985 0.521677075 0.592872187 0.628738219 0.533095379 1 10.35015424 -9.31516975 0.793867595 1.03077607 0.589711648 0 0.152260326 0.192297127 0.192747672 0.055262022 0.011265095 4.84E-10 9.31516975 -0.441064423 RTNSS(ph)SSSPVVLK ddPTM_HeLa_CUDC101_4h_R1 1 RTNSSSSSPVVLK 13 1 E9PMC9;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7;Q7Z589-2 E9PMC9 C11orf30;EMSY Protein EMSY 1 0 RT(0.004)NS(0.324)S(0.613)S(0.029)S(0.029)S(0.001)PVVLK 117.08 0.00018099 0 740.09 625.26 626.02 578.24 693.14 800.42 469.08 788.12 654.8 807.2 TRUE FALSE FALSE 653.3377721 644.5235195 659.8645348 601.8231266 642.0084431 785.1533221 487.1725727 877.8363951 627.8088668 802.3987385 0.814230807 0.803245928 0.822364871 0.750030001 0.800111481 0.978507673 0.607145238 1.094015173 0.782415072 1 9.648175528 -9.159198366 0.830851475 1.004146376 0.825365712 0 0.13948066 0.719508152 0.866175689 0.081321102 0.021387926 6.93E-10 9.159198366 -0.178780665 EGFEK(ac)ISK ddPTM_HeLa_CUDC101_4h_R1 2 EGFEKISK 8 1 P10809;E7EXB4;E7ESH4;C9JL25;P10809-2 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 ; EGFEK(1)ISK;EGFEK(1)ISK 125.56 0.0021137 20038000 7236.4 6010.1 5646.9 6517.1 6465.1 6290.4 5659.8 6145.5 5464.6 6101.3 FALSE TRUE FALSE 6388.160162 6195.264057 5952.188495 6782.895507 5988.182453 6170.421101 5878.100382 6845.078879 5239.346875 6065.009196 1.0532812 1.021476449 0.981398099 1.118365247 0.98733279 1.017380337 0.969182435 1.128618054 0.863864622 1 12.56629412 -4.241539751 24.40167187 1.022840344 1.128618191 0.19983585 0.064603177 2851.651182 3496729.176 0.005425298 0.285781285 5.73E-05 4.241539751 0.105777848 S(ph)LPAS(ph)PSTSDFCQTR ddPTM_HeLa_CUDC101_4h_R1 2 SLPASPSTSDFCQTR 15 0 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R2Y6 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 2 0 S(1)LPAS(0.972)PS(0.023)T(0.004)S(0.001)DFCQTR;S(1)LPAS(0.987)PS(0.011)T(0.002)SDFCQTR ; 211.49 1.26E-22 23897000 3424 3182.6 2769.1 2816.4 3513.6 2797.7 2511.2 2172.51 3199.8 1049.45 TRUE FALSE FALSE 3022.64391 3280.652134 2918.805922 2931.264966 3254.408728 2744.338534 2608.057825 2419.819757 3067.90289 1043.207825 2.897451341 3.144773319 2.797914138 2.80985715 3.119616869 2.630672881 2.500036679 2.319595098 2.940835773 1 10.02681088 -9.158822806 0.820149924 0.95081326 2.792150837 0 0.639566396 0.182507149 0.213055952 0.211350197 0.054928357 6.94E-10 9.158822806 1.841337577 AT(ph)SPLVSLYPALECR ddPTM_HeLa_CUDC101_4h_R1 1 ATSPLVSLYPALECR 15 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 AT(0.624)S(0.376)PLVSLYPALECR 162.67 0.00021838 115720000 2819.7 2634.4 2057.3 2430.2 2629.5 2462.2 2412.3 2047.3 2687.7 1462.4 TRUE FALSE FALSE 2489.17904 2715.562741 2168.523861 2529.31406 2435.527024 2415.237637 2505.343219 2280.356357 2576.911868 1453.70158 1.712304007 1.86803315 1.4917256 1.739912851 1.675396834 1.661439783 1.723423331 1.568655072 1.77265534 1 10.50551542 -9.158493005 0.770506712 0.968955985 1.68564992 0 0.255600154 0.183785761 0.184779343 0.080726959 0.01978118 6.94E-10 9.158493005 0.716693935 LPPHVSYTIRT(ph)NVLY(ph)S(ph)VR ddPTM_HeLa_CUDC101_4h_R1 1 LPPHVSYTIRTNVLYSVR 18 1 F5H7B7;A0A0A0MT16;Q86UQ4-6;Q86UQ4-7;Q86UQ4-5;Q86UQ4-3;Q86UQ4;Q86UQ4-4 F5H7B7 ABCA13 ATP-binding cassette sub-family A member 13 3 0 LPPHVS(0.006)Y(0.004)T(0.006)IRT(0.985)NVLY(1)S(1)VR 77.124 0.010309 4852800 144.63 112.79 0 149.52 167.45 154.38 138.77 160.41 264 11752 TRUE FALSE FALSE 127.6766906 116.2649262 0 155.6180719 155.0975471 151.4354587 144.1224054 178.670426 253.1178083 11682.09858 0.01092926 0.009952401 0 0.013321072 0.013276514 0.012963036 0.01233703 0.015294378 0.021667152 1 13.51201184 -9.158363018 0.655549347 1.094164549 3.75E-16 0 0.301412172 0.067132141 0.045771083 0.041728198 0.008844224 6.94E-10 9.158363018 -1.094164549 EGFLDTLVVLHR ddPTM_HeLa_CUDC101_4h_R1 2 EGFLDTLVVLHR 12 0 P42771-2;P42771;K7ES20;K7ENC6;J3QRG6;P42771-4;P42772 P42771-2 CDKN2A;CDKN2B Cyclin-dependent kinase inhibitor 2A;Cyclin-dependent kinase 4 inhibitor B 0 0 ; ; 193.73 4.46E-16 34658000 20036.5 17719.8 15023.3 15641.6 18141.6 17945.9 16520.4 15981.8 15245.5 15784.7 FALSE FALSE TRUE 17687.85184 18265.72603 15835.50504 16279.53206 16803.33031 17603.61186 17157.59736 17801.10351 14617.07404 15690.8119 1.127274481 1.164103308 1.00922152 1.037520057 1.070902539 1.121905735 1.093480533 1.134492187 0.931569005 1 13.93763238 -9.412535877 1.144557388 1.000089641 1.095346776 0.486825099 0.049808779 0.426743215 1.00151407 0.032070318 0.008154666 3.87E-10 9.412535877 0.095257135 EGGDGEEQDVGDAGR ddPTM_HeLa_CUDC101_4h_R1 4 EGGDGEEQDVGDAGR 15 0 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 0 0 ;;; ;;; 253.97 1.26E-55 50146100 6863.33 8669.2 7798.73 8315.8 8508.6 8863.58 6937.92 5742.5 9715.9 11177.4 FALSE FALSE TRUE 6058.820862 8936.287776 8220.352934 8654.954268 7880.93753 8694.521979 7205.517898 6396.202988 9315.40649 11110.91633 0.545303437 0.804279999 0.739844734 0.77895954 0.709296812 0.782520696 0.64850798 0.575668361 0.838401282 1 13.43969018 -9.513181812 1.24476831 1.001224052 0.688739025 0.432365823 0.094976268 0.249888983 0.688725153 0.066729758 0.01581969 3.07E-10 9.513181812 -0.312485027 GLFQDEDSCS(ph)DCSYR ddPTM_HeLa_CUDC101_4h_R1 2 GLFQDEDSCSDCSYR 15 0 Q8NEM2 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 1 0 GLFQDEDS(0.452)CS(0.544)DCS(0.004)YR;GLFQDEDS(0.273)CS(0.719)DCS(0.009)YR ; 224.55 1.20E-32 13515300 3919.1 3530.5 3051.3 3384 3792.9 3810.5 3797.5 3261.4 2977.8 489.52 TRUE FALSE FALSE 3459.709039 3639.27052 3216.262508 3522.014147 3513.105324 3737.821061 3943.970847 3632.664593 2855.053824 486.6083133 7.109843676 7.47884987 6.609551091 7.237883223 7.219575227 7.681375265 8.105021512 7.465274419 5.867252461 1 8.926617157 -9.158182874 0.544927964 1.93E-24 7.579466161 0.381659029 1.530816672 0.136373487 0.060100704 0.531283804 0.098436169 6.95E-10 9.158182874 7.579466161 T(ph)S(ph)MS(ph)RGPYPPSQEIPMEVFDPSPQGK ddPTM_HeLa_CUDC101_4h_R1 1 TSMSRGPYPPSQEIPMEVFDPSPQGK 26 1 Q6TME4;Q02641-3;Q02641-2;Q02641 Q6TME4 CACNB1 Voltage-dependent L-type calcium channel subunit beta-1 3 0 T(0.997)S(0.992)MS(0.991)RGPY(0.017)PPS(0.003)QEIPMEVFDPS(0.001)PQGK 43.501 0.0026578 0 0 0 0 0 0 0 0 0 0 107.42 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 106.7810611 0 0 0 0 0 0 0 0 0 1 6.73851198 -9.157829429 0.677150941 1.083625666 2.50E-23 0 0.307667284 0.066591669 0.049088893 0.041658111 0.0090835 6.95E-10 9.157829429 -1.083625666 DYLLS(ph)ES(ph)EDEGDNDGERK ddPTM_HeLa_CUDC101_4h_R1 2 DYLLSESEDEGDNDGERK 18 1 Q9BVJ6-3;Q9BVJ6 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 2 0 DY(0.006)LLS(0.997)ES(0.997)EDEGDNDGERK;DY(0.153)LLS(0.891)ES(0.956)EDEGDNDGERK ; 62.167 0.019371 39062000 12685.4 10485.5 11171.5 10518.5 11651.5 11591.3 11537.9 10682.5 12325.5 14035.6 TRUE FALSE FALSE 11198.43664 10808.54583 11775.46508 10947.48989 10791.99206 11370.21526 11982.92067 11898.55262 11817.43767 13952.11563 0.802633589 0.774688665 0.843991363 0.784647303 0.773502195 0.814945602 0.858860476 0.852813504 0.846999694 1 13.76819628 -9.157701884 0.791495947 1.00698841 0.811651037 0.240038777 0.054955395 0.216139167 0.231858875 0.026164029 0.006582863 6.96E-10 9.157701884 -0.195337374 VLT(ph)PEEQLADKLR ddPTM_HeLa_CUDC101_4h_R1 2 VLTPEEQLADKLR 13 1 O75822-2;O75822;O75822-3 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 VLT(1)PEEQLADKLR;VLT(1)PEEQLADKLR ; 99.915 0.011358 144225000 8500.5 7613 6848.9 7027.1 8070.5 7436.8 6833.9 6951.9 8544.3 5856.3 TRUE FALSE FALSE 7504.084276 7847.547506 7219.172251 7313.695512 7475.155294 7294.955431 7097.485812 7743.276195 8192.100338 5821.466467 1.28903676 1.348036195 1.240095136 1.256332155 1.284067397 1.253113021 1.21919208 1.330124675 1.407222799 1 12.50716691 -9.157157884 0.792621457 0.989814606 1.27614729 0 0.130968072 0.179976331 0.193769629 0.031948637 0.00805473 6.96E-10 9.157157884 0.286332684 S(ph)CPELTSGPR ddPTM_HeLa_CUDC101_4h_R1 4 SCPELTSGPR 10 0 Q13111;Q13111-3;Q13111-2 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 S(1)CPELTSGPR;S(1)CPELTSGPR;S(1)CPELTSGPR;S(1)CPELTSGPR ;;; 189.17 1.63E-11 178381000 3502.26 3011.88 3084.15 2874.85 3083.22 2763.08 3314.67 2861.25 3567.86 1699.07 TRUE FALSE FALSE 3091.730392 3104.672453 3250.888478 2992.098809 2855.777003 2710.378853 3442.517932 3186.963134 3420.791301 1688.963856 1.830548582 1.838211304 1.92478274 1.771558816 1.69084554 1.604758351 2.038242512 1.886933887 2.02537863 1 10.72192274 -9.156792224 0.68071398 0.931860247 1.830574712 0 0.336819801 0.235881422 0.17618236 0.12266723 0.026905776 6.97E-10 9.156792224 0.898714465 DLS(ph)PEPAPDEGPRR ddPTM_HeLa_CUDC101_4h_R1 2 DLSPEPAPDEGPRR 14 1 Q8TBE0-3;Q8TBE0-2;Q8TBE0 Q8TBE0-3 BAHD1 Bromo adjacent homology domain-containing 1 protein 1 0 DLS(1)PEPAPDEGPRR;DLS(1)PEPAPDEGPRR ; 110.22 0.0018783 77231000 5660.1 5225.6 5243.6 5345.2 4890.9 4383 4347.8 3679.2 4533.6 3773.5 TRUE FALSE FALSE 4996.631658 5386.594542 5527.084877 5563.20036 4530.108051 4299.401578 4515.496102 4098.025256 4346.723089 3751.055054 1.332060337 1.43602119 1.473474742 1.483102828 1.207689033 1.146184611 1.203793609 1.092499363 1.158800131 1 11.87308072 -9.156757344 0.976337584 1.005209458 1.301112282 0.260256851 0.137567442 0.447942637 0.787779151 0.088460282 0.027186872 6.97E-10 9.156757344 0.295902824 EGIDPTPYYWYTDQR ddPTM_HeLa_CUDC101_4h_R1 1 EGIDPTPYYWYTDQR 15 0 O43776 O43776 NARS "Asparagine--tRNA ligase, cytoplasmic" 0 0 247.13 5.96E-55 11365000 1025 991.26 913.69 964.14 674.35 923.97 933.41 765.54 820.86 940.3 FALSE FALSE TRUE 904.8510538 1021.799546 963.0868452 1003.461797 624.604544 906.3468117 969.4119364 852.6859792 787.0238034 934.7070538 0.968058442 1.093176243 1.030362231 1.073557531 0.668235616 0.969658684 1.037129154 0.912249432 0.842000496 1 9.868370471 S(ph)SPVEFECINEK ddPTM_HeLa_CUDC101_4h_R1 2 SSPVEFECINEK 12 0 H0YB26;O75131 H0YB26 CPNE3 Copine-3 1 0 S(0.898)S(0.102)PVEFECINEK;S(0.936)S(0.064)PVEFECINEK ; 273.72 2.06E-85 82989000 6736.4 6016.4 5822.9 5945 6078.1 5704.3 5184.3 5083.3 6221.8 4610.3 TRUE FALSE FALSE 5946.769404 6201.758153 6137.703587 6187.462796 5629.730672 5595.499982 5384.260188 5661.962325 5965.334771 4582.877731 1.297605948 1.353245388 1.339268457 1.350126091 1.228426985 1.220957728 1.174864464 1.235460044 1.301656977 1 12.16203808 -9.156692583 0.896991493 0.999079249 1.275080982 0 0.108123229 0.256341676 0.370242321 0.045954899 0.013044598 6.97E-10 9.156692583 0.276001732 EGIREETVSLR ddPTM_HeLa_CUDC101_4h_R1 2 EGIREETVSLR 11 1 P20618 P20618 PSMB1 Proteasome subunit beta type-1 0 0 ; ; 156.01 0.00023369 43448000 2678.4 2814.5 2517.43 2721.7 3180.4 2944.8 2620.6 2660.4 2680.4 3672.1 FALSE FALSE TRUE 2364.442012 2901.211409 2653.529881 2832.70269 2945.788228 2888.632846 2721.67742 2963.249182 2569.912777 3650.258186 0.647746513 0.79479622 0.726943067 0.776028036 0.807008184 0.791350282 0.745612305 0.811791668 0.704035892 1 11.8337828 -9.484844946 1.213852944 1.000653702 0.752454587 0 0.101414033 0.188843286 0.495768765 0.039124102 0.009455688 3.27E-10 9.484844946 -0.248199116 GLTS(ph)VINQK ddPTM_HeLa_CUDC101_4h_R1 1 GLTSVINQK 9 0 A0A5F9ZHM4;P07195 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 1 0 GLT(0.016)S(0.984)VINQK 100.82 0.016974 26395000 3743.9 2799.6 3340.1 3419.1 4139.7 4034.5 3084.7 2622.5 3739.8 6695 TRUE FALSE FALSE 3305.045717 2885.852358 3520.675909 3558.545677 3834.322578 3957.548634 3203.677912 2921.034799 3585.643861 6655.177842 0.496612682 0.43362513 0.529013047 0.534703318 0.576141265 0.594657082 0.481381263 0.438911607 0.538775063 1 12.7002615 -9.156385059 0.746857824 1.02634446 0.510619943 0.058490056 0.149657389 0.165016827 0.154082283 0.051420802 0.012271018 6.98E-10 9.156385059 -0.515724518 MS(ph)NVTLRKMS(ph)PT(ph)GNEMK ddPTM_HeLa_CUDC101_4h_R1 1 MSNVTLRKMSPTGNEMK 17 2 F2Z2X8;O95171-3;O95171-2;O95171 F2Z2X8 SCEL Sciellin 3 0 MS(0.81)NVT(0.203)LRKMS(0.992)PT(0.995)GNEMK 57.288 0.021314 20934000 1395.2 1202.4 1287.8 1046.8 1317 1133.2 1246.4 1244.2 1148.6 150.13 TRUE FALSE FALSE 1231.656771 1239.444519 1357.422363 1089.493029 1219.847534 1111.586098 1294.474066 1385.834699 1101.254222 149.2370201 8.253024419 8.305208172 9.095748244 7.300420687 8.17389367 7.448460827 8.673947421 9.286132208 7.379229505 1 7.221461648 -9.155637285 0.641875519 0.255274783 8.404102722 0.177921477 2.049404816 0.154984857 0.100616463 0.709369775 0.148262424 6.99E-10 9.155637285 8.148827938 VRGGAPDPSPGATATPGAPAQPS(ph)SPDAR ddPTM_HeLa_CUDC101_4h_R1 2 VRGGAPDPSPGATATPGAPAQPSSPDAR 28 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 VRGGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDAR;VRGGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDAR ; 184 1.67E-22 115353000 7735.8 7205.4 6875.2 6786.7 6769.6 7402.2 7011.5 7598.7 7408.9 3779.1 TRUE FALSE FALSE 6829.021251 7427.389833 7246.894108 7063.490961 6270.220095 7261.015368 7281.935904 8463.705293 7103.502006 3756.621745 1.817862355 1.977146047 1.929098696 1.880277398 1.669111377 1.932857727 1.938426703 2.253009717 1.890928203 1 11.87522014 -9.155267248 0.464677908 0.790700383 1.963841401 0.001360754 0.308643414 0.43224912 0.133136806 0.23718247 0.041049824 6.99E-10 9.155267248 1.173141018 EGK(ac)YIPLPQR ddPTM_HeLa_CUDC101_4h_R1 1 EGKYIPLPQR 10 1 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BSK9;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 0 1 EGK(1)YIPLPQR 105.2 0.0078109 1057100 431.58 790.04 644.63 666.92 760.51 682.47 747.3 751.89 492.68 531.17 FALSE TRUE FALSE 380.9908466 814.380196 679.4806477 694.1198803 704.4086924 669.4530218 776.1236113 837.4821184 472.3715219 528.0105772 0.721559118 1.542355837 1.286869387 1.314594651 1.334080647 1.267878052 1.469901636 1.586108602 0.894625112 1 9.04442302 -7.261958694 24.99999898 0.868514024 1.387641959 0.80420296 0.119315322 16.84176568 810762.495 0.024131967 0.028491813 5.47E-08 7.261958694 0.519127934 S(ph)PSVSSPEPAEK ddPTM_HeLa_CUDC101_4h_R1 2 SPSVSSPEPAEK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.999)PS(0.001)VSSPEPAEK;S(0.99)PS(0.009)VS(0.002)SPEPAEK ; 153.75 0.00034642 14666400 4273.7 3490.7 3600 3833.3 4381.2 3922.1 3265.2 3297.9 4783.8 4469.5 TRUE FALSE FALSE 3772.743365 3598.24433 3794.626889 3989.638543 4058.007605 3847.292477 3391.139858 3673.319605 4586.609739 4442.915215 0.849159433 0.809883636 0.854084921 0.897977645 0.913365979 0.865938757 0.763269091 0.826781387 1.032342396 1 12.1172909 -9.154577893 0.659130953 1.014319615 0.846402381 0.711979865 0.042333894 0.483200965 0.334439736 0.046181827 0.009881094 7.01E-10 9.154577893 -0.167917235 EGKPTIVEEDDPELFK ddPTM_HeLa_CUDC101_4h_R1 1 EGKPTIVEEDDPELFK 16 1 O75937 O75937 DNAJC8 DnaJ homolog subfamily C member 8 0 0 126.77 0.00062997 6225500 2369 1780.4 2124.3 1792.8 2059.7 1714.8 1667.2 1553.8 1873.1 2419 FALSE FALSE TRUE 2091.309411 1835.252014 2239.146084 1865.918133 1907.760035 1682.093047 1731.504462 1730.678311 1795.890025 2404.61168 0.869707749 0.763221783 0.931188225 0.775974827 0.793375517 0.699527937 0.720076541 0.719732972 0.746852409 1 11.23158822 -4.07158948 0.060742527 1.403358244 3.87E-07 0.047880101 0.092442962 41.4959719 0.380468512 2.739910182 6.780286519 8.48E-05 4.07158948 -1.403357856 EGLDIYK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 EGLDIYKK 8 1 Q13492-4;Q13492-3;Q13492-2;Q13492-5;Q13492 Q13492-4 PICALM Phosphatidylinositol-binding clathrin assembly protein 0 1 EGLDIYK(1)K 87.639 0.012005 0 811.29 358.38 322.35 358.45 829.84 655.44 991.01 614.69 599.6 435.32 FALSE TRUE FALSE 716.191816 369.421263 339.7772161 373.0691404 768.6243565 642.938574 1029.233588 684.6638249 574.8842342 432.7306973 1.655052023 0.853697843 0.785193235 0.862127745 1.7762187 1.485770661 2.378462157 1.582193797 1.328503473 1 8.757325657 -5.667390239 7.710401478 1.20732801 1.830428255 0.500365654 0.340962571 0.204136126 14.66457669 0.057941395 0.116123263 2.15E-06 5.667390239 0.623100245 EGLDWDLIYVGR ddPTM_HeLa_CUDC101_4h_R1 1 EGLDWDLIYVGR 12 0 M0QX72;Q8NBJ5 M0QX72 COLGALT1 Procollagen galactosyltransferase 1 0 0 121.36 0.017427 7234200 1400.9 1319.3 1259.1 1228.9 1667.2 1598.2 1227.3 1210.8 1391.1 1591.4 FALSE FALSE TRUE 1236.688626 1359.946069 1327.170755 1279.019854 1544.213978 1567.716998 1274.637372 1348.632578 1333.758269 1581.934282 0.78175727 0.859672924 0.838954418 0.808516427 0.976155581 0.991012721 0.805746096 0.852521241 0.843118633 1 10.62747395 -9.548005215 1.330536777 0.99959641 0.856734586 0 0.081032202 0.394513228 1.256781066 0.050186028 0.012037604 2.83E-10 9.548005215 -0.142861823 EGLELPEDEEEK ddPTM_HeLa_CUDC101_4h_R1 4 EGLELPEDEEEK 12 0 P07900;P07900-2;Q58FG0;Q58FF6;P08238;Q58FF7 P07900;P08238 HSP90AA1;HSP90AA5P;HSP90AB4P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ;;; ;;; 220.94 1.67E-31 409571000 27813 21821 20913 21976.1 18562.3 19429.8 19499.3 17143.4 23131.9 23916.6 FALSE FALSE TRUE 24552.8023 22493.27915 22043.62004 22872.38035 17192.99611 19059.20894 20251.39453 19094.93536 22178.39329 23774.343 1.032743673 0.946115699 0.92720207 0.962061511 0.723174395 0.80167132 0.85181721 0.80317405 0.932870923 1 14.53711785 -6.22975567 1.19694084 1.012679354 0.801529484 0.653209416 0.05524759 0.15072484 0.425869958 0.00831764 0.01679236 5.89E-07 6.22975567 -0.21114987 EGLELPEDEEEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 EGLELPEDEEEKK 13 1 P07900;P07900-2;Q58FG0;Q58FF6;P08238;Q58FF7 P07900;P08238 HSP90AA1;HSP90AA5P;HSP90AB4P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 1 EGLELPEDEEEK(1)K 140.63 0.0009905 1097700 911.18 401.74 308.97 353.18 854.65 781.53 850.5 704.19 968.94 967.69 FALSE TRUE FALSE 804.3728617 414.1171332 325.6738528 367.584207 791.6041722 766.6236174 883.3040699 784.3521432 928.9998831 961.9341368 0.836203676 0.430504665 0.338561488 0.382130328 0.822929702 0.796960611 0.918258367 0.815390694 0.965762465 1 9.909794307 -7.548177872 3.457413174 0.934535005 0.644226694 0.324256745 0.194450359 0.227664501 5.762276604 0.040414649 0.043445438 2.83E-08 7.548177872 -0.290308311 EGLELPEDEEEK(ac)KKQEEK ddPTM_HeLa_CUDC101_4h_R1 1 EGLELPEDEEEKKKQEEK 18 3 P07900;P07900-2;Q58FG0 P07900 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 1 EGLELPEDEEEK(0.591)K(0.204)K(0.204)QEEK 55.851 0.019024 1428400 734.62 421.61 332.96 671.76 794.51 651.7 756.23 836.3 460.81 483.98 FALSE TRUE FALSE 648.5089572 434.5993044 350.9608247 699.1572764 735.9005802 639.2699083 785.3980444 931.5010116 441.8152168 481.1012654 1.347967681 0.903342676 0.729494703 1.453243478 1.529616804 1.328763722 1.632500475 1.936184913 0.918341415 1 8.910196784 -3.807440773 0.532481032 1.121328977 2.920750717 0.63303344 0.219107032 3.399191029 0.463133443 0.046510078 4.225352973 0.000155797 3.807440773 1.79942174 EGLELPEDEEEKK ddPTM_HeLa_CUDC101_4h_R1 2 EGLELPEDEEEKK 13 1 P07900;P07900-2;Q58FG0;Q58FF6;P08238;Q58FF7 P07900;P08238 HSP90AA1;HSP90AA5P;HSP90AB4P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ; ; 115.34 0.0033486 44032000 3217.6 2883.9 2534.36 2463.83 2646.26 2987.43 2641.31 2654.4 3112.44 3680 FALSE FALSE TRUE 2840.437806 2972.749541 2671.375168 2564.315637 2451.050672 2930.44975 2743.186211 2956.566167 2984.143906 3658.111196 0.776476617 0.81264603 0.730260789 0.700994448 0.670031757 0.801082743 0.749891423 0.80822206 0.815760852 1 11.83688321 -9.005875054 0.533481444 1.031441342 0.743684966 0.318324703 0.0706805 0.373749989 0.170812302 0.053534245 0.011792767 9.87E-10 9.005875054 -0.287756376 EGLELPEDEEEKK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EGLELPEDEEEKKK 14 2 P07900;P07900-2;Q58FG0;P08238;Q58FF7 P07900;P08238 HSP90AA1;HSP90AA5P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 1 ; EGLELPEDEEEK(0.008)K(0.992)K;EGLELPEDEEEK(0.009)K(0.991)K 178.67 1.21E-07 43470000 10245.7 3644.6 3666.7 3408.7 8616.6 7467.3 9524.8 7816.1 8345.2 6778.5 FALSE TRUE FALSE 9044.714577 3756.885806 3864.932893 3547.72152 7980.970585 7324.873694 9892.174727 8705.85323 8001.207324 6738.181181 1.342308011 0.557551913 0.573586965 0.526510259 1.184439891 1.087069863 1.468077878 1.292018276 1.187443185 1 12.71814351 -4.861843243 4.840524484 1.029558519 1.378484122 0.225514139 0.29125029 0.301919697 11.60652756 0.048309793 0.154983235 1.37E-05 4.861843243 0.348925603 EGLELPEDEEEKKK ddPTM_HeLa_CUDC101_4h_R1 2 EGLELPEDEEEKKK 14 2 P07900;P07900-2;Q58FG0;P08238;Q58FF7 P07900;P08238 HSP90AA1;HSP90AA5P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ; ; 81.676 0.011171 286130000 10172 8063.2 8973.5 8761 8216.5 8534.3 8344.8 8044.9 9088.3 9860.7 FALSE FALSE TRUE 8979.65358 8311.617635 9458.634553 9118.311448 7610.385165 8371.522447 8666.661731 8960.698897 8713.676427 9802.048118 0.916099724 0.847947035 0.964965122 0.93024553 0.776407652 0.854058493 0.884168454 0.914165977 0.88896487 1 13.25886751 -8.58120082 0.360343667 1.023493161 0.866626934 0.026340523 0.059212695 1.236254705 0.313696782 0.078370611 0.024952405 2.62E-09 8.58120082 -0.156866227 KAAS(ph)LTEDRDR ddPTM_HeLa_CUDC101_4h_R1 2 KAASLTEDRDR 11 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 KAAS(0.99)LT(0.01)EDRDR;KAAS(0.996)LT(0.004)EDRDR ; 96.135 0.014641 862220000 14163.5 12602.6 15850.7 15834.3 11088.1 3481.8 3252.2 2759.8 12464.2 14305.3 TRUE FALSE FALSE 12503.276 12990.87117 16707.63679 16480.0912 10270.15295 3415.390466 3377.638443 3073.964477 11950.4204 14220.21144 0.879260906 0.91354979 1.174921826 1.158920264 0.72222224 0.240178599 0.237523785 0.21616869 0.84038275 1 13.7956553 -5.384176167 3.186158413 0.971677035 0.225569593 0.910885238 0.106335143 0.055232278 1.053083131 0.016348289 0.039857695 4.13E-06 5.384176167 -0.746107442 down SEETLLT(ph)PER ddPTM_HeLa_CUDC101_4h_R1 1 SEETLLTPER 10 0 Q6P4F7-3;Q6P4F7;H3BQ41 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 SEETLLT(1)PER 126.03 0.00055878 0 2317.2 1970.1 1911.2 2112.4 2158.1 1941.5 1611 794.33 2941.9 2808.7 TRUE FALSE FALSE 2045.581329 2030.796446 2014.525253 2198.552803 1998.901263 1904.469122 1673.13681 884.7533164 2820.633637 2791.993727 0.732659715 0.727364258 0.721536454 0.787449048 0.715940456 0.68211798 0.599262381 0.316889436 1.01025787 1 11.44707999 -5.349253729 0.100208626 1.26061978 3.52E-18 0.776703128 0.087779777 13.71140056 0.345317292 1.322709523 3.216023673 4.47E-06 5.349253729 -1.26061978 EGLQNMEAR ddPTM_HeLa_CUDC101_4h_R1 1 EGLQNMEAR 9 0 P31948;P31948-2;P31948-3;F5GXD8;F5H783 P31948 STIP1 Stress-induced-phosphoprotein 1 0 0 127.46 0.01901 68101000 2447.4 1886.7 1784.9 1882.5 1892.5 2061.8 1838.9 1811.1 1701.5 1494.2 FALSE FALSE TRUE 2160.519482 1944.826991 1881.397093 1959.276487 1752.894045 2022.4746 1909.826989 2017.268303 1631.36345 1485.312432 1.45458924 1.309372324 1.266667573 1.319100578 1.180151736 1.361649278 1.285808257 1.358144091 1.098330166 1 10.53655072 -9.466999027 1.184913796 0.998702744 1.325388207 0.678326557 0.072736121 0.203241593 0.507256365 0.054466185 0.013207509 3.41E-10 9.466999027 0.326685463 ENVEYIEREES(ph)DGEYDEFGRK ddPTM_HeLa_CUDC101_4h_R1 2 ENVEYIEREESDGEYDEFGRK 21 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 ENVEY(0.003)IEREES(0.994)DGEY(0.003)DEFGRK;ENVEY(0.004)IEREES(0.539)DGEY(0.457)DEFGRK ; 57.171 0.0094281 386444000 5247.5 4252.8 4275.2 4578.5 4749.4 5078.4 4706 4526.4 4837.4 5390.3 TRUE FALSE FALSE 4632.396005 4383.823727 4506.330244 4765.23102 4399.046224 4981.537981 4887.511996 5041.66708 4638.000325 5358.238256 0.864537145 0.818146472 0.841009681 0.889327946 0.820987424 0.929696991 0.912149062 0.940918794 0.865583071 1 12.38754302 -9.154539405 0.937941019 0.999006171 0.875848692 0 0.057300266 0.339829226 0.545118233 0.027564433 0.008183123 7.01E-10 9.154539405 -0.123157479 EY(ph)NADGGKMPIK ddPTM_HeLa_CUDC101_4h_R1 1 EYNADGGKMPIK 12 1 A0A0A0MSE1;Q15303-4;Q15303-3;Q15303-2;Q15303 A0A0A0MSE1 ERBB4 Receptor protein-tyrosine kinase;Receptor tyrosine-protein kinase erbB-4;ERBB4 intracellular domain 1 0 EY(1)NADGGKMPIK 96.665 0.0011971 0 1197.4 952.82 982.8 1108.1 1156.2 1205.9 946.35 1233 1054.4 4496.2 TRUE FALSE FALSE 1057.042587 982.1752548 1035.933141 1153.293108 1070.909429 1182.899467 982.8510365 1373.359736 1010.937186 4469.456402 0.236503613 0.219752732 0.231780567 0.258038787 0.239606192 0.264662939 0.219903932 0.307276683 0.226187951 1 12.12588366 -9.15415312 0.68190924 1.061576932 0.236559624 0 0.239572922 0.085439342 0.064171089 0.04079746 0.008992689 7.01E-10 9.15415312 -0.825017308 NSNSPPS(ph)PSSMNQR ddPTM_HeLa_CUDC101_4h_R1 3 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 NSNSPPS(0.848)PS(0.032)S(0.12)MNQR;NS(0.009)NS(0.352)PPS(0.534)PS(0.053)S(0.053)MNQR;NSNSPPS(0.48)PS(0.48)S(0.041)MNQR ;; 236.31 1.71E-43 145423000 4346.31 3598.88 3838.4 3627.31 3996.03 3398.32 3709.56 3680.56 4583.5 4665.4 TRUE FALSE FALSE 3836.84213 3709.757227 4045.915515 3775.24738 3701.250828 3333.502708 3852.638972 4099.540073 4394.56619 4637.649993 0.827324644 0.799921778 0.872406396 0.814043187 0.798087573 0.718791352 0.830730861 0.883969269 0.947584703 1 12.17917823 -9.154123818 0.520764813 1.032884352 0.808762919 0.645616651 0.04544235 0.565579051 0.22508369 0.063437803 0.011518318 7.01E-10 9.154123818 -0.224121433 EGMDELR ddPTM_HeLa_CUDC101_4h_R1 1 EGMDELR 7 0 H0Y7V5;Q7Z3E2 H0Y7V5 CCDC186 Coiled-coil domain-containing protein 186 0 0 72.021 0.003082 0 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 EGMNIVEAMER ddPTM_HeLa_CUDC101_4h_R1 6 EGMNIVEAMER 11 0 P62937;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed" 0 0 ;;;;; ;;;;; 229.82 1.38E-32 224149000 15875.7 12104.9 9894.9 11469.7 12682.9 11278.7 10718.7 10232.3 11372.9 13339.7 FALSE FALSE TRUE 14014.77451 12477.83762 10429.84822 11937.48394 11747.30773 11063.57759 11132.12385 11397.10367 10904.10425 13260.35487 1.05689287 0.940988212 0.786543673 0.900238648 0.885896935 0.834334955 0.839504218 0.859487079 0.82230863 1 13.69483176 -7.007922305 4.727314734 1.026122839 0.853570804 0.198576551 0.071880779 0.051512323 3.089416933 0.005747681 0.007350415 9.82E-08 7.007922305 -0.172552035 ERDS(ph)ELSDTDSGCCLGQSESDK ddPTM_HeLa_CUDC101_4h_R1 1 ERDSELSDTDSGCCLGQSESDK 22 1 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 1 0 ERDS(0.421)ELS(0.421)DT(0.149)DS(0.008)GCCLGQSESDK 88.394 0.00031158 28841000 2842.3 2320.4 2769.1 2429.3 2473.2 2424.9 2163.2 1980.3 3422 949.81 TRUE FALSE FALSE 2509.129903 2391.888774 2918.805922 2528.377354 2290.756963 2378.649073 2246.635349 2205.729347 3280.943712 944.1604879 2.65752479 2.53334979 3.091429857 2.677910574 2.426236845 2.519327067 2.379505791 2.336180528 3.474985189 1 9.882888299 -9.15359946 0.776405355 0.934389584 2.590806471 0 0.790249578 0.185597078 0.190460597 0.188745519 0.046877005 7.02E-10 9.15359946 1.656416886 LSMEDSKS(ph)PPPK ddPTM_HeLa_CUDC101_4h_R1 1 LSMEDSKSPPPK 12 1 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 0 LSMEDS(0.003)KS(0.997)PPPK 107.39 0.032037 71535000 3498.9 2647.9 3359.6 2929.3 3573.3 3134.2 3160.9 2736.1 3605 4729.3 TRUE FALSE FALSE 3088.764246 2729.47866 3541.230138 3048.769516 3309.704778 3074.420357 3282.816972 3047.566564 3456.400374 4701.169913 0.657020338 0.58059562 0.75326572 0.648512939 0.704017264 0.653969206 0.698297877 0.648257055 0.735221325 1 12.19880411 -9.153544701 0.758782316 1.01618772 0.667457706 0.287363603 0.091320377 0.176237411 0.171166633 0.037363295 0.009082148 7.02E-10 9.153544701 -0.348730014 EGNDLYHEMIESGVINLK ddPTM_HeLa_CUDC101_4h_R1 1 EGNDLYHEMIESGVINLK 18 0 P06576;H0YH81;F8W0P7;F8W079;H0YI37 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 0 148.7 4.05E-07 0 695.37 582.65 625.7 744.58 609.71 610.13 653.6 601.06 585.11 514.77 FALSE FALSE TRUE 613.8597827 600.6007559 659.5272346 774.9471907 564.732908 598.4927868 678.8095709 669.4822408 560.9915181 511.7081251 1.199628758 1.17371745 1.288873876 1.514432061 1.103623101 1.169597975 1.326556171 1.308328338 1.096311531 1 8.999177331 -8.536438532 0.49191932 0.98300808 1.281915754 0.391213164 0.108365728 0.704466849 0.341551058 0.095525506 0.033957734 2.91E-09 8.536438532 0.298907674 EGNGTSNSTLSGPGLDSKPGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 EGNGTSNSTLSGPGLDSKPGKR 22 2 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 0 1 EGNGTSNSTLSGPGLDSK(0.005)PGK(0.995)R 212.55 9.98E-30 2408600 296.11 264.03 356.51 209.55 252.93 245.38 286.23 414.59 174.13 171.45 FALSE TRUE FALSE 261.4004347 272.1644513 375.784009 218.0963548 234.2718578 240.6997853 297.269987 461.7852498 166.9522877 170.4302078 1.53376821 1.596926125 2.204914339 1.279681329 1.374591165 1.412307058 1.744232967 2.709527001 0.979593289 1 7.413037257 -1 0.058666946 2.33E-12 4.950809338 0.447321314 0.375632208 254.585127 1.129062881 20.06745738 109.0540091 0.1 1 4.950809338 EGNPEEDLTADK ddPTM_HeLa_CUDC101_4h_R1 2 EGNPEEDLTADK 12 0 P40121-2;P40121;E7ENU9 P40121-2 CAPG Macrophage-capping protein 0 0 ; ; 168.83 5.91E-06 28920000 4427.8 3500 3308 3196 3640.9 3428 3178.1 3298.8 3818.6 4634.4 FALSE FALSE TRUE 3908.779996 3607.830851 3486.840486 3326.346694 3372.318061 3362.616611 3300.680382 3674.322058 3661.195692 4606.834383 0.848474174 0.783147505 0.756884272 0.722046077 0.732025026 0.729919144 0.716474722 0.797580671 0.794731346 1 12.16956002 -8.012144539 0.528622657 0.99702226 0.728831376 0.349224372 0.065389118 0.135057365 0.088820001 0.014770794 0.009077533 9.72E-09 8.012144539 -0.268190883 EGNQEVPFDVPELWYEDEK ddPTM_HeLa_CUDC101_4h_R1 1 EGNQEVPFDVPELWYEDEK 19 0 P42704 P42704 LRPPRC "Leucine-rich PPR motif-containing protein, mitochondrial" 0 0 105.92 0.00012419 0 956.41 585.08 484.8 729.85 491.34 441.21 374.95 460.03 484.51 713.87 FALSE FALSE TRUE 844.3010696 603.1056213 511.0097544 759.6164377 455.0948271 432.7946544 389.4119471 512.3979557 464.5382927 709.6238695 1.189786739 0.849894778 0.720113537 1.070449389 0.641318375 0.609893033 0.548758242 0.722069786 0.654626081 1 9.470910728 -6.203917103 0.771795008 1.083800448 0.60250007 0.138690462 0.191459424 0.314836458 0.365874227 0.029119354 0.073363107 6.25E-07 6.203917103 -0.481300378 S(ph)KSPPKVPIVIQDDSLPAGPPPQIR ddPTM_HeLa_CUDC101_4h_R1 3 SKSPPKVPIVIQDDSLPAGPPPQIR 25 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 S(0.5)KS(0.5)PPKVPIVIQDDSLPAGPPPQIR;S(0.5)KS(0.5)PPKVPIVIQDDSLPAGPPPQIR;S(0.5)KS(0.5)PPKVPIVIQDDSLPAGPPPQIR ;; 105.56 4.15E-07 1244330000 5795.35 4827.83 4864.97 5178.71 4915.26 5079.08 5236.09 5590.1 5043.96 6769.4 TRUE FALSE FALSE 5116.027858 4976.56972 5127.984994 5389.920178 4552.671062 4982.205011 5438.047745 6226.454388 4836.045834 6729.135308 0.760280129 0.739555603 0.762057049 0.800982583 0.676561082 0.74039305 0.8081347 0.925297843 0.718672699 1 12.71620542 -9.153397826 0.800504799 1.007504445 0.771581599 0 0.105604042 0.336426874 0.371484703 0.049347144 0.012619203 7.02E-10 9.153397826 -0.235922846 NSSLGSPSNLCGS(ph)PPGSIR ddPTM_HeLa_CUDC101_4h_R1 4 NSSLGSPSNLCGSPPGSIR 19 0 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 0 NSSLGSPSNLCGS(0.999)PPGSIR;NSSLGS(0.103)PS(0.091)NLCGS(0.797)PPGS(0.008)IR;NSSLGSPS(0.003)NLCGS(0.997)PPGSIR;NSSLGSPS(0.001)NLCGS(0.999)PPGSIR ;;; 244.72 2.91E-56 214955000 8044.7 7065.22 6787.21 6620.97 7652.8 7116.8 6468.29 7272.7 7860.3 4331.59 TRUE FALSE FALSE 7101.712461 7282.891054 7154.147103 6891.001775 7088.268191 6981.058897 6717.774112 8100.594771 7536.295107 4305.82551 1.64932658 1.691404131 1.661504185 1.600390392 1.646204235 1.621305573 1.560159393 1.881310506 1.750255576 1 12.07207414 -9.152996348 0.630799892 0.929241355 1.668413154 0 0.245834615 0.212950146 0.132809426 0.087572213 0.018108039 7.03E-10 9.152996348 0.739171799 QSNAS(ph)SDVEVEEK ddPTM_HeLa_CUDC101_4h_R1 1 QSNASSDVEVEEK 13 0 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QSNAS(0.743)S(0.257)DVEVEEK 183.28 6.94E-11 55322000 5555.3 4616.4 5071.6 4095.5 4107.4 4691.7 4925.3 3857.2 5021.2 6819.7 TRUE FALSE FALSE 4904.116155 4758.625812 5345.786037 4262.532192 3804.405285 4602.213639 5115.270471 4296.288057 4814.224011 6779.136121 0.723413141 0.701951654 0.788564493 0.628772179 0.561193228 0.678879072 0.754560814 0.633751555 0.710153023 1 12.72688572 -9.152622709 0.405638299 1.089825113 0.658125671 0.095329857 0.107342767 0.682437202 0.157449011 0.126715226 0.02156575 7.04E-10 9.152622709 -0.431699441 SGGLQTPECLS(ph)R ddPTM_HeLa_CUDC101_4h_R1 3 SGGLQTPECLSR 12 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 1 0 SGGLQTPECLS(1)R;SGGLQTPECLS(1)R;SGGLQTPECLS(1)R ;; 164.93 5.20E-05 332662000 4593.2 4295.8 3883.6 3793.26 3492.09 4033.7 3710.7 3482.13 3748.72 1641.98 TRUE FALSE FALSE 4054.792059 4428.148506 4093.559163 3947.965539 3234.485478 3956.763893 3853.822942 3878.521604 3594.196175 1632.21343 2.484229075 2.712971493 2.507980322 2.418780207 1.981655964 2.424170651 2.361102336 2.376234341 2.202038109 1 10.672614 -9.152479063 0.816418936 0.961268037 2.409076575 0.211128696 0.40308054 0.16996427 0.19677927 0.15415413 0.04021351 7.04E-10 9.152479063 1.447808538 AMT(ph)RCPRAS(ph)SMSGSCGRR ddPTM_HeLa_CUDC101_4h_R1 1 AMTRCPRASSMSGSCGRR 18 3 Q9Y250-7 Q9Y250-7 2 0 AMT(1)RCPRAS(0.25)S(0.25)MS(0.25)GS(0.25)CGRR 53.008 0.031994 22751000 3079.3 2809 2543.7 2515.6 3095.8 2867.2 2609.4 2739.9 2712.5 399.51 TRUE FALSE FALSE 2718.349122 2895.541961 2681.220116 2618.197041 2867.429002 2812.512937 2710.045432 3051.799141 2600.689602 397.1336968 6.844921859 7.291101169 6.751429401 6.592734544 7.22031151 7.08203046 6.824012805 7.684563576 6.548650047 1 8.633480968 -9.151759205 0.5934819 0.224655664 7.156412313 0.092070005 1.738798892 0.113192021 0.061126799 0.422504421 0.083516345 7.05E-10 9.151759205 6.931756648 HAPTYTIPLS(ph)PVLSPTLPAEAPTAQVPPSLPR ddPTM_HeLa_CUDC101_4h_R1 1 HAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPR 32 0 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 1 0 HAPT(0.016)Y(0.001)T(0.048)IPLS(0.564)PVLS(0.223)PT(0.146)LPAEAPT(0.001)AQVPPSLPR 50.179 0.011398 51813000 634.21 508.7 525.15 476.77 693.71 512 592.05 631.2 614.8 712.4 TRUE FALSE FALSE 559.8688652 524.372444 553.5411975 496.2147414 642.5363954 502.2344531 614.8855668 703.0532566 589.4576838 708.1626131 0.79059365 0.740468975 0.781658319 0.700707341 0.907328887 0.709207806 0.868283012 0.992785052 0.83237617 1 9.46793687 -9.151734146 0.908827712 0.999819477 0.806517728 0.057125379 0.099976168 0.448559692 0.669201908 0.056460809 0.016327765 7.05E-10 9.151734146 -0.193301748 NKDSGSDTASAIIPSTTPS(ph)VDSDDESVVKDK ddPTM_HeLa_CUDC101_4h_R1 1 NKDSGSDTASAIIPSTTPSVDSDDESVVKDK 31 2 Q6WKZ4;E7EX40;Q6WKZ4-2;Q6WKZ4-3 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 0 NKDSGSDTASAIIPS(0.007)T(0.007)T(0.007)PS(0.45)VDS(0.45)DDES(0.08)VVKDK 86.449 1.18E-07 14006000 5185.9 4745 3875.1 4810.2 5124.1 4305.9 3835.4 4040.6 3979 2992.4 TRUE FALSE FALSE 4578.016663 4891.187826 4084.599628 5006.380747 4746.105352 4223.772132 3983.332663 4500.565571 3814.983936 2974.601072 1.539035505 1.64431724 1.373158796 1.683042743 1.595543482 1.419945744 1.339114915 1.512998033 1.282519519 1 11.53848048 -9.151723784 0.80507222 0.984021033 1.513705875 0.50739136 0.135657735 0.26355383 0.295207527 0.086945803 0.022402435 7.05E-10 9.151723784 0.529684842 LYADS(ph)DSGDDS(ph)DKR ddPTM_HeLa_CUDC101_4h_R1 1 LYADSDSGDDSDKR 14 1 O43896 O43896 KIF1C Kinesin-like protein KIF1C 2 0 LYADS(0.997)DS(0.383)GDDS(0.62)DKR 117.48 0.0034503 3528100 3090.6 2745.5 2865.5 2511 2794.3 2552.2 2445.2 2466.6 2425.3 2317.6 TRUE FALSE FALSE 2728.324553 2830.085601 3020.417598 2613.409433 2588.170056 2503.521037 2539.512183 2747.387774 2325.328107 2303.814812 1.18426383 1.228434502 1.311050516 1.134383467 1.123427995 1.086685017 1.102307429 1.192538462 1.009338118 1 11.16980904 -9.151673927 0.953340202 1.002118634 1.168463269 0.522939579 0.062911877 0.39449556 0.65770179 0.043388522 0.013124411 7.05E-10 9.151673927 0.166344635 EGPTVETK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 EGPTVETKR 9 1 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 0 1 ; EGPTVETK(1)R;EGPTVETK(1)R 117.81 0.001729 18754500 1201.63 1355.97 1427.86 1184.87 1202.6 1320.57 1431.2 1401.82 1313.62 1378 FALSE TRUE FALSE 1060.776753 1397.745828 1505.054431 1233.19412 1113.886594 1295.382327 1486.401863 1561.397522 1259.472028 1369.803595 0.77440062 1.020398715 1.098737393 0.900270758 0.813172486 0.945670118 1.085120428 1.139869634 0.919454462 1 10.41975334 -4.739184792 3.317179796 0.911573895 1.127402546 0.369940052 0.091535677 0.205305356 4.566622532 0.015990345 0.067276946 1.82E-05 4.739184792 0.215828651 YDDYSS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 YDDYSSSR 8 0 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 YDDYS(0.189)S(0.808)S(0.003)R 83.499 0.03791 7526300 1805 1408.1 1377.1 1616.2 1665.1 1465.3 1850.3 1826.7 1723 11365 TRUE FALSE FALSE 1593.420636 1451.481892 1451.550191 1682.115622 1542.26889 1437.351844 1921.666691 2034.644144 1651.977211 11297.40047 0.141043122 0.128479281 0.128485327 0.148894042 0.136515377 0.127228547 0.17009813 0.180098435 0.146226312 1 13.46370323 -9.150420737 0.664442178 1.076269545 0.132331468 0 0.263503101 0.07788545 0.055072417 0.041974518 0.0090906 7.07E-10 9.150420737 -0.943938077 SSLSNCNS(ph)DSEQENISMVEGLK ddPTM_HeLa_CUDC101_4h_R1 2 SSLSNCNSDSEQENISMVEGLK 22 0 Q8NEM2 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 1 0 S(0.001)S(0.001)LS(0.012)NCNS(0.966)DS(0.021)EQENISMVEGLK;S(0.001)S(0.001)LS(0.019)NCNS(0.874)DS(0.104)EQENISMVEGLK ; 115.34 4.28E-06 18988500 5797.5 5511.6 4519.4 4198.4 5661.4 4668.1 5281 4725.1 5328.4 2582.6 TRUE FALSE FALSE 5117.925838 5681.405863 4763.732434 4369.628899 5243.769801 4579.06377 5484.689939 5262.986284 5108.761097 2567.23858 1.993552869 2.213041634 1.855586182 1.702073556 2.042572062 1.78365338 2.13641614 2.050057336 1.989982986 1 11.32600166 -9.150057827 0.73613689 0.94444956 1.974541048 0 0.33823102 0.225562683 0.204024815 0.139238226 0.033053322 7.08E-10 9.150057827 1.030091488 EFLSNPPAGFPS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 EFLSNPPAGFPSSR 14 0 Q14674;H3BRX7 Q14674 ESPL1 Separin 1 0 EFLSNPPAGFPS(0.5)S(0.5)R 81.239 0.01536 37760000 3096.1 2661.6 2485.7 2450.6 3118 2819.8 2544.5 3067.3 3018.5 3608.4 TRUE FALSE FALSE 2733.179851 2743.600741 2620.084461 2550.54606 2887.991352 2766.017013 2642.642217 3416.469034 2894.076152 3586.937076 0.761981544 0.764886777 0.730451749 0.711065181 0.805141348 0.771136196 0.736740612 0.952475318 0.806837726 1 11.80853672 -9.149788087 0.805147401 1.006847288 0.773381317 0.105191508 0.086395067 0.327751619 0.367494556 0.047629063 0.01230347 7.08E-10 9.149788087 -0.233465971 EGPYSISVLYGDEEVPR ddPTM_HeLa_CUDC101_4h_R1 2 EGPYSISVLYGDEEVPR 17 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 ; ; 274.24 2.47E-85 84348000 1943.06 1566.37 1545.47 1818.62 2070.02 1575.62 1586.55 1939.73 1707.02 1852.62 FALSE FALSE TRUE 1715.297452 1614.628003 1629.022783 1892.791184 1917.318749 1545.567674 1647.743765 2160.541023 1636.655913 1841.600534 0.931416678 0.876752571 0.884569022 1.027796826 1.041115439 0.839252403 0.894734626 1.173186575 0.888713857 1 10.84674444 -6.224684396 24.92365655 0.952868534 0.983519982 0.085947999 0.093382501 2222.698609 1507218.906 0.014022066 0.02325237 5.96E-07 6.224684396 0.030651448 QICLVMLETLSQS(ph)PQGR ddPTM_HeLa_CUDC101_4h_R1 4 QICLVMLETLSQSPQGR 17 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 QICLVMLET(0.001)LS(0.057)QS(0.943)PQGR;QICLVMLET(0.004)LS(0.002)QS(0.994)PQGR;QICLVMLET(0.007)LS(0.368)QS(0.625)PQGR;QICLVMLET(0.011)LS(0.219)QS(0.77)PQGR ;;; 145.04 0.0001664 727585000 11349.5 10223.5 9059.1 9748 10533.6 9753.8 9442.5 8853.8 11819.1 2818.86 TRUE FALSE FALSE 10019.12881 10538.47392 9548.862348 10145.56557 9756.557314 9567.762516 9806.700388 9861.680804 11331.9117 2802.093295 3.575587162 3.760928994 3.407760321 3.620709414 3.481881681 3.414505338 3.499776544 3.519397737 4.044087937 1 11.45228928 -9.149575895 0.701422959 0.818510606 3.55887682 0 0.944411212 0.093089391 0.074991231 0.149489753 0.033982855 7.09E-10 9.149575895 2.740366214 EGQEEDDDDEEDDADEEAPKPDHFVQDPAVLR ddPTM_HeLa_CUDC101_4h_R1 2 EGQEEDDDDEEDDADEEAPKPDHFVQDPAVLR 32 1 Q9H1I8-3;Q9H1I8 Q9H1I8-3 ASCC2 Activating signal cointegrator 1 complex subunit 2 0 0 ; ; 101.86 1.95E-10 33150000 3379.3 2722.2 3015.7 3047.2 3361.5 2794.63 2804.6 3170.6 2674.6 2219.78 FALSE FALSE TRUE 2983.183577 2806.067755 3178.737864 3171.477987 3113.528842 2741.327089 2912.774361 3531.528288 2564.351856 2206.57665 1.351951031 1.271683789 1.440574414 1.437284305 1.411022292 1.242343922 1.32004223 1.60045575 1.162140393 1 11.10759415 -9.331685344 0.422701508 0.876978111 1.403870988 0.560821545 0.105159283 0.922281059 0.208733573 0.216752647 0.029843114 4.66E-10 9.331685344 0.526892878 EGQHYPER ddPTM_HeLa_CUDC101_4h_R1 2 EGQHYPER 8 0 Q15424-2;Q15424;Q15424-4;Q15424-3 Q15424-2 SAFB Scaffold attachment factor B1 0 0 ; ; 95.358 0.021353 2271380 2865.13 993.45 3878.9 3096.96 1829.27 1594.5 2058.82 914.79 3402.51 4149.4 FALSE FALSE TRUE 2529.283805 1024.057017 4088.605067 3223.267415 1694.328397 1564.087569 2138.229377 1018.925996 3262.257098 4124.719184 0.613201455 0.248273148 0.991244466 0.78145136 0.410774242 0.379198559 0.518393927 0.24702918 0.790904048 1 12.01008019 -13.52287875 0.079573188 2.669117375 5.02E-12 0.375811512 0.212302722 119.15855 0.728172307 35.30755678 3.95380882 3.00E-14 13.52287875 -2.669117375 S(ph)IMAEPDY(ph)IEDDNPELIR ddPTM_HeLa_CUDC101_4h_R1 2 SIMAEPDYIEDDNPELIR 18 0 Q9H098-2 Q9H098-2 FAM107B Protein FAM107B 2 0 S(1)IMAEPDY(1)IEDDNPELIR;S(1)IMAEPDY(1)IEDDNPELIR ; 81.239 0.011568 60486800 2930.5 2463.9 2607 2340.06 3111.92 2445.51 2415.55 2082.39 2628.6 1779.34 TRUE FALSE FALSE 2586.991232 2539.809839 2747.942306 2435.497761 2882.359861 2398.865971 2508.718573 2319.44086 2520.247995 1768.756407 1.462604586 1.43592969 1.55360133 1.376954878 1.629596846 1.3562444 1.418351653 1.311339906 1.424870031 1 10.78851966 -9.148933651 0.747859745 0.97705641 1.44981314 0.026086266 0.156874211 0.259791309 0.244199124 0.074094548 0.017874071 7.10E-10 9.148933651 0.472756729 ECS(ph)PTSSLER ddPTM_HeLa_CUDC101_4h_R1 1 ECSPTSSLER 10 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 ECS(0.718)PT(0.096)S(0.143)S(0.043)LER 84.31 0.037069 40669000 1720.3 1585.9 1333.1 1640.5 1236.5 1408.3 1494.5 1462.4 1711.2 742.78 TRUE FALSE FALSE 1518.649042 1634.759699 1405.171418 1707.406681 1145.285858 1381.439024 1552.143366 1628.873705 1640.663612 738.3619115 2.056781394 2.214035792 1.903093045 2.312425186 1.551117197 1.870951091 2.102144411 2.206064099 2.222031752 1 9.528184323 -9.148764658 0.762545252 0.952877788 2.02476695 0 0.428106563 0.269786943 0.265726375 0.175930985 0.043227208 7.10E-10 9.148764658 1.071889162 VADAKGDS(ph)ES(ph)EEDEDLEVPVPSR ddPTM_HeLa_CUDC101_4h_R1 3 VADAKGDSESEEDEDLEVPVPSR 23 1 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 2 0 VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR ;; 84.576 0.0004468 649961000 27300.2 24678 22872.4 22227.8 24817.2 22632.6 21612.5 23714.1 24537.2 17389.4 TRUE FALSE FALSE 24100.11194 25438.29993 24108.95113 23134.34576 22986.4846 22200.92086 22446.10136 26413.61729 23525.76623 17285.96708 1.394200963 1.471615665 1.394712313 1.338331009 1.329777183 1.284332011 1.2985158 1.528038158 1.360974837 1 14.0773137 -9.148289413 0.818959871 0.99031333 1.374902677 0.043495688 0.13106043 0.23894453 0.279173904 0.057557281 0.015139587 7.11E-10 9.148289413 0.384589346 HIKEEPLSEEEPCTST(ph)AIASPEK ddPTM_HeLa_CUDC101_4h_R1 1 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 HIKEEPLS(0.179)EEEPCT(0.219)S(0.269)T(0.332)AIAS(0.002)PEK 73.341 0.00092802 325430000 6531 5771.9 5412.6 5578.4 5499.6 5805.8 5856.6 5170 4294.1 4667 TRUE FALSE FALSE 5765.44608 5949.725398 5705.221528 5805.911264 5093.905465 5695.064038 6082.491024 5758.531902 4117.09538 4639.240476 1.242756462 1.282478334 1.229774908 1.251478834 1.098004186 1.227585435 1.3110963 1.241266093 0.887450306 1 12.17967292 -9.147751877 0.756798605 0.988630926 1.236215437 0.746710128 0.065592683 0.312436546 0.302340357 0.046893322 0.011455506 7.12E-10 9.147751877 0.24758451 NKGTSDSSSGNVS(ph)EGESPPDSQEDSFQGR ddPTM_HeLa_CUDC101_4h_R1 2 NKGTSDSSSGNVSEGESPPDSQEDSFQGR 29 1 S5FZ81;Q8WUB8-3;Q8WUB8-2;Q8WUB8 S5FZ81 PHF10 PHD finger protein 10 1 0 NKGTSDSSSGNVS(0.996)EGES(0.003)PPDSQEDSFQGR;NKGTSDSS(0.001)S(0.001)GNVS(0.989)EGES(0.008)PPDSQEDSFQGR ; 110.43 1.16E-10 23352500 2808.23 2372.33 2339.52 2384.81 3000.54 2586.76 2444.69 1706.02 2556.97 2307.5 TRUE FALSE FALSE 2479.053536 2445.418675 2466.001528 2482.07286 2779.196142 2537.421863 2538.982512 1900.226421 2451.570614 2293.774887 1.080774556 1.066111016 1.075084369 1.082090868 1.211625499 1.106220962 1.106901347 0.828427598 1.068793031 1 11.1635081 -9.146855084 0.758611956 0.996476179 1.077917998 0 0.092892012 1.491163173 1.451869865 0.073677132 0.01805948 7.13E-10 9.146855084 0.081441819 EGRPPEPTPAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 EGRPPEPTPAKR 12 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 1 ; EGRPPEPTPAK(1)R;EGRPPEPTPAK(1)R 96.059 0.023915 93135000 5687.2 5910.3 6428.1 6532.4 6779.7 6079.4 6613.8 6227.7 4462.1 4114.3 FALSE TRUE FALSE 5020.555037 6092.389338 6775.62253 6798.819507 6279.575038 5963.445574 6868.896481 6936.636195 4278.170349 4089.827961 1.227571205 1.489644405 1.656701112 1.662372983 1.535413005 1.458116486 1.679507438 1.696070412 1.046051421 1 11.99782444 -7.426262003 1.101552756 1.064860036 1.617519978 0.897766744 0.079928328 0.105214134 0.253697112 0.020411651 0.022416343 3.75E-08 7.426262003 0.552659942 EVDGLLTS(ph)EPMGSPVSSK ddPTM_HeLa_CUDC101_4h_R1 1 EVDGLLTSEPMGSPVSSK 18 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 1 0 EVDGLLT(0.383)S(0.566)EPMGS(0.051)PVSSK 97.904 0.0010534 0 475.24 389 390.57 439.91 504.9 357.79 475.08 326.16 189.78 561.97 TRUE FALSE FALSE 419.5330876 400.9846289 411.6853956 457.8514313 467.6545329 350.9657519 493.4039947 363.288736 181.9571881 558.6273774 0.75100703 0.717803397 0.736958861 0.819600775 0.837149327 0.628264503 0.88324349 0.650323902 0.325721931 1 9.125742469 -9.146296691 0.730230771 1.014297291 0.754934595 0 0.223514617 0.396347323 0.352255957 0.06131616 0.014517911 7.14E-10 9.146296691 -0.259362696 RGS(ph)GDTSSLIDPDTSLSELR ddPTM_HeLa_CUDC101_4h_R1 3 RGSGDTSSLIDPDTSLSELR 20 1 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 RGS(0.967)GDT(0.012)S(0.018)S(0.003)LIDPDTSLSELR;RGS(0.968)GDT(0.029)S(0.002)S(0.001)LIDPDTSLSELR;RGS(0.963)GDT(0.017)S(0.019)S(0.002)LIDPDTSLSELR ;; 124.39 1.17E-05 357763400 6801.4 5883.4 5444.8 5744.7 6230 6462 5812.1 5941.9 6112.2 7052.4 TRUE FALSE FALSE 6004.150202 6064.66058 5739.162358 5978.993697 5770.425312 6338.748116 6036.274644 6618.301878 5860.252529 7010.452011 0.856456929 0.865088381 0.818657962 0.852868501 0.82311744 0.904185366 0.861039293 0.944062076 0.835930767 1 12.77529175 -9.145011275 0.802930956 1.004086797 0.862969458 0 0.060987603 0.306120916 0.341671001 0.026817742 0.006951458 7.16E-10 9.145011275 -0.141117339 EGRPSGEAFVELESEDEVK ddPTM_HeLa_CUDC101_4h_R1 4 EGRPSGEAFVELESEDEVK 19 1 P31943;G8JLB6;E9PCY7;D6RDU3;D6RBM0;D6RIH9;D6RJ04;D6RIU0;D6RIT2;D6RFM3;D6R9T0;D6RAM1;E7EN40;D6RDL0;E7EQJ0 P31943;E7EQJ0 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 0 0 ;;; ;;; 240.34 2.58E-44 41117500 8899.1 8499 8311.1 8104.1 8775.2 8342.5 8205.2 8423.4 8714.6 9174.2 FALSE FALSE TRUE 7855.960988 8760.844116 8760.423206 8434.620227 8127.870979 8183.380712 8521.677313 9382.285807 8355.380499 9119.63145 0.861434043 0.960657694 0.960611539 0.924886085 0.89124994 0.897336779 0.934432204 1.028800984 0.916197167 1 13.15475981 -9.671007851 1.53897032 0.999847448 0.920446203 0 0.051445372 0.430263374 1.840225157 0.034339079 0.007747225 2.13E-10 9.671007851 -0.079401245 EGRPSGEAFVELESEEEVK ddPTM_HeLa_CUDC101_4h_R1 1 EGRPSGEAFVELESEEEVK 19 1 P55795 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 0 0 126.43 5.83E-05 2077600 1489.7 1416.7 1077.5 1439.5 1326.2 1271.1 1229.9 1103.9 1376.4 1179.8 FALSE FALSE TRUE 1315.079624 1460.346848 1135.752909 1498.209032 1228.368868 1246.855885 1277.337655 1229.563514 1319.664209 1172.782497 1.121332922 1.245198365 0.968425869 1.277482428 1.047396999 1.06316038 1.089151363 1.048415641 1.125242074 1 10.19571976 -9.172848149 1.010059816 1.002345736 1.108513385 0 0.095441191 0.671377341 1.270564395 0.048379924 0.01504295 6.72E-10 9.172848149 0.106167649 QLPLEPES(ph)PSGQVGPR ddPTM_HeLa_CUDC101_4h_R1 2 QLPLEPESPSGQVGPR 16 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 QLPLEPES(0.945)PS(0.055)GQVGPR;QLPLEPES(0.761)PS(0.239)GQVGPR ; 125.61 0.00051487 46946000 3109.99 2764.41 2424.66 2618.81 2831.4 3020.73 2458.7 2519.43 2658.78 3686.77 TRUE FALSE FALSE 2745.441687 2849.578195 2555.744454 2725.616391 2622.533263 2963.114608 2553.532883 2806.231727 2549.183963 3664.840928 0.749129837 0.777544852 0.697368454 0.743720245 0.715592659 0.808524754 0.696764998 0.765717198 0.695578338 1 11.83953486 -9.144526394 0.601865629 1.031013676 0.73758377 0 0.099892542 0.227569445 0.127540387 0.036183457 0.007293129 7.17E-10 9.144526394 -0.293429906 NS(ph)TELAPPLPVRR ddPTM_HeLa_CUDC101_4h_R1 1 NSTELAPPLPVRR 13 1 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 NS(0.766)T(0.234)ELAPPLPVRR 87.99 0.0031452 0 1551.6 1305.8 1485.9 1157.3 1944.3 1546.4 1052.8 596.56 1168 880.37 TRUE FALSE FALSE 1369.7238 1346.03015 1566.232249 1204.499696 1800.872863 1516.904996 1093.406849 664.469979 1119.854546 875.1335201 1.565159794 1.538085469 1.789706614 1.376361056 2.057826402 1.733341212 1.249417173 0.7592784 1.279638501 1 9.773359337 -9.144321199 0.84711467 0.991947345 1.53208763 0.137210082 0.339785114 0.708073213 0.897762094 0.242305341 0.066151989 7.17E-10 9.144321199 0.540140285 NVS(ph)PEFVPCEGEGGFGLHK ddPTM_HeLa_CUDC101_4h_R1 4 NVSPEFVPCEGEGGFGLHK 19 0 O94986-3;O94986 O94986-3 CEP152 Centrosomal protein of 152 kDa 1 0 NVS(1)PEFVPCEGEGGFGLHK;NVS(1)PEFVPCEGEGGFGLHK;NVS(1)PEFVPCEGEGGFGLHK;NVS(1)PEFVPCEGEGGFGLHK ;;; 150.26 2.55E-05 117850000 14832.3 13532.2 12204.9 12167.1 14381.2 12487.9 11381.8 11533.4 12873.1 6547.4 TRUE FALSE FALSE 13093.68028 13949.11104 12864.73381 12663.32693 13320.32753 12249.71411 11820.79984 12846.31564 12342.46537 6508.455774 2.01179523 2.143228982 1.976618457 1.94567304 2.046618736 1.88212297 1.816221889 1.973788573 1.896373856 1 12.66809957 -9.143722581 0.780254814 0.962745266 1.976595077 0.107390172 0.285700227 0.136683933 0.14255042 0.084996801 0.021477702 7.18E-10 9.143722581 1.013849811 SCFESS(ph)PDPELK ddPTM_HeLa_CUDC101_4h_R1 3 SCFESSPDPELK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SCFES(0.044)S(0.956)PDPELK;SCFES(0.249)S(0.751)PDPELK;SCFES(0.16)S(0.84)PDPELK ;; 257.19 2.51E-69 5785360000 42977.1 37448.5 37091.9 35891.6 38720.4 36855.2 36812.6 36305.7 38625.8 21339.9 TRUE FALSE FALSE 37939.38949 38602.2439 39097.20031 37355.41458 35864.07323 36152.24846 38232.47431 40438.59414 37033.62818 21212.96933 1.78849971 1.819747311 1.843080038 1.760970565 1.690667284 1.704252145 1.802316014 1.906314647 1.745801241 1 14.37265896 -9.142813884 0.67728308 0.936222441 1.794935333 0.05126762 0.236834912 0.145856578 0.108395293 0.07205744 0.01602021 7.20E-10 9.142813884 0.858712892 KEPAITSQNS(ph)PEAR ddPTM_HeLa_CUDC101_4h_R1 3 KEPAITSQNSPEAR 14 1 E5RIS7;A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193 E5RIS7 TCEA1 Transcription elongation factor A protein 1 1 0 KEPAITS(0.003)QNS(0.997)PEAR;KEPAITS(0.024)QNS(0.976)PEAR;KEPAITS(0.001)QNS(0.999)PEAR ;; 81.639 0.012546 58672900 5444 4788.2 4425.3 4551 4637.4 4849.2 4479.5 4425.7 5517.5 6008.4 TRUE FALSE FALSE 4805.862573 4935.718767 4664.545104 4736.609451 4295.308241 4756.709589 4652.275816 4929.503799 5290.066315 5972.66177 0.80464335 0.826385112 0.780982631 0.793048332 0.719161474 0.796413688 0.77892839 0.825344543 0.885713358 1 12.54415831 -9.142339889 0.490177077 1.041761625 0.778720444 0.621460336 0.04422678 0.328780786 0.11487821 0.041716915 0.007472666 7.21E-10 9.142339889 -0.263041181 GLGTDEDS(ph)LIEIICSR ddPTM_HeLa_CUDC101_4h_R1 3 GLGTDEDSLIEIICSR 16 0 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5;H0YKS4;H0YNA0;H0YMM1;H0YN52;H0YLE2 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR ;; 290.5 8.45E-104 45425500 3807.2 3352.15 3209.89 3049 3751.48 3277.6 3217.8 3116.63 3819.01 2187.22 TRUE FALSE FALSE 3360.925787 3455.425768 3383.426363 3173.351399 3474.740794 3215.085241 3341.911624 3471.414561 3661.588791 2174.210318 1.545814478 1.589278525 1.556163327 1.459542056 1.598162223 1.478736999 1.537069158 1.596632365 1.684100549 1 11.08627579 -9.141962205 0.681735391 0.957097203 1.549538189 0 0.216022971 0.140492064 0.106106274 0.048027381 0.010750559 7.21E-10 9.141962205 0.592440986 T(ph)ASRPDDIPDSPSSPK ddPTM_HeLa_CUDC101_4h_R1 1 TASRPDDIPDSPSSPK 16 1 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 T(0.582)AS(0.295)RPDDIPDS(0.108)PS(0.011)S(0.003)PK 120.99 0.0093661 11037000 2722.6 2204 2204.4 2414.6 2838.6 2291.3 2342.3 2326.7 2271.5 2662.2 TRUE FALSE FALSE 2403.460955 2271.902628 2323.576532 2513.077825 2629.202133 2247.59727 2432.643296 2591.562123 2177.867809 2646.365116 0.908212151 0.858499311 0.878025681 0.949633824 0.993514507 0.84931488 0.919239481 0.97929122 0.822965733 1 11.36979641 -9.141119795 0.96626852 0.998534923 0.915700233 0 0.070799051 0.510953046 0.881407976 0.027974611 0.008678542 7.23E-10 9.141119795 -0.08283469 EDVTKDADLS(ph)PVNASIIK ddPTM_HeLa_CUDC101_4h_R1 2 EDVTKDADLSPVNASIIK 18 1 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 EDVTKDADLS(0.986)PVNAS(0.014)IIK;EDVT(0.001)KDADLS(0.999)PVNASIIK ; 113.42 0.00018546 38125000 7305.5 6649.5 5997.9 5598.3 7082.8 6416.3 6086.3 6019.4 6732.5 5722.8 TRUE FALSE FALSE 6449.160364 6854.363213 6322.164617 5826.622872 6560.315955 6293.919768 6321.05063 6704.624165 6454.9835 5688.760531 1.133667049 1.20489572 1.111343074 1.024234161 1.153206559 1.106378047 1.111147252 1.178573808 1.13469067 1 12.47389864 -9.140774174 0.879230041 0.999242142 1.125634889 0 0.061441422 0.394718577 0.547017074 0.0319889 0.009088068 7.23E-10 9.140774174 0.126392747 GPS(ph)LDIDTPDVNIEGPEGK ddPTM_HeLa_CUDC101_4h_R1 1 GPSLDIDTPDVNIEGPEGK 19 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GPS(0.997)LDIDT(0.003)PDVNIEGPEGK 164.97 7.11E-06 4916900 918.7 865.05 638.03 621.8 673.02 905.83 899.85 1147.5 1158.9 1166.7 TRUE FALSE FALSE 811.0113787 891.7011652 672.5238317 647.1596916 623.3726554 888.552802 934.5575159 1278.126762 1111.129651 1159.760417 0.69929217 0.768866701 0.579881691 0.558011536 0.537501234 0.766152034 0.805819463 1.102061032 0.958068266 1 10.17961109 -9.139007356 0.825585292 1.005793144 0.714932981 0.292429294 0.154967651 0.655290124 0.783315781 0.119373156 0.032014149 7.26E-10 9.139007356 -0.290860163 EGSGPIAFAHK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 EGSGPIAFAHKR 12 1 Q9UNI6 Q9UNI6 DUSP12 Dual specificity protein phosphatase 12 0 1 ; EGSGPIAFAHK(1)R;EGSGPIAFAHK(1)R 83.182 0.011421 0 1868.75 1813.67 1413.17 2249 2558.3 2073.8 1920.6 1568.12 1121.33 846.42 FALSE TRUE FALSE 1649.697958 1869.547023 1489.570245 2340.723941 2369.579306 2034.24572 1994.678185 1746.628442 1075.108303 841.3854562 1.960692267 2.221986379 1.770377933 2.781987642 2.816282702 2.417733401 2.370706756 2.07589569 1.277783321 1 9.71662307 -8.401357092 0.42956173 0.879186963 2.48320274 0.739036828 0.287736514 0.42253318 0.16604579 0.291034638 0.113658551 3.97E-09 8.401357092 1.604015777 LMET(ph)LMY(ph)S(ph)RPRK ddPTM_HeLa_CUDC101_4h_R1 1 LMETLMYSRPRK 12 2 Q9H5Y7 Q9H5Y7 SLITRK6 SLIT and NTRK-like protein 6 3 0 LMET(1)LMY(1)S(1)RPRK 50.675 0.0033133 0 828.92 902.81 629.98 640 798.27 743.11 666.44 518.62 885.79 609.25 TRUE FALSE FALSE 731.7552542 930.624506 664.0386244 666.1019663 739.3832125 728.9364149 692.144814 577.6576045 849.2773613 605.6261539 1.208262307 1.536631963 1.096449716 1.099856672 1.220857467 1.203607886 1.142858197 0.953818789 1.402312889 1 9.242283699 -9.138440013 1.086349284 1.008129107 1.187550536 0 0.186612479 0.611613661 1.374786004 0.07474908 0.02581507 7.27E-10 9.138440013 0.179421428 EGSGSSGTGEQKEDQK(ac)EEKQ ddPTM_HeLa_CUDC101_4h_R1 1 EGSGSSGTGEQKEDQKEEKQ 20 3 P38646 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 1 EGSGSSGTGEQKEDQK(0.518)EEK(0.482)Q 101.28 0.010633 2185700 1863.6 767.19 1029.9 1180.8 1722.7 1236.9 1798.4 1152.6 1405.1 1412.5 FALSE TRUE FALSE 1645.151633 790.8262146 1085.579509 1228.958128 1595.619853 1213.308193 1867.76489 1283.807325 1347.181183 1404.098387 1.171678315 0.563227066 0.773150599 0.875264967 1.136401742 0.864119071 1.330223656 0.914328609 0.959463522 1 10.45542832 -4.7847103 24.99651104 1.00133475 1.122276772 0.026210435 0.203525818 546.696798 587236.1568 0.030689831 0.092150175 1.64E-05 4.7847103 0.120942022 AAVLSDS(ph)EDEEK ddPTM_HeLa_CUDC101_4h_R1 1 AAVLSDSEDEEK 12 0 Q96ST2-3;Q96ST2;Q96ST2-2 Q96ST2-3 IWS1 Protein IWS1 homolog 1 0 AAVLS(0.441)DS(0.559)EDEEK 180.61 1.69E-08 8901000 4325.4 3729.7 3428.1 3836.6 3704.8 4097.3 3806.3 3726.8 4838.7 4400.6 TRUE FALSE FALSE 3818.383169 3844.607636 3613.433455 3993.073131 3431.504285 4019.150829 3953.110266 4151.043848 4639.246738 4374.425035 0.872888011 0.878882963 0.826036205 0.912822394 0.784446929 0.918783794 0.903686824 0.948934732 1.060538631 1 12.09487769 -9.137849329 0.811559752 1.003082869 0.878546613 0.572043127 0.049630507 0.427534977 0.490922568 0.033114914 0.008750217 7.28E-10 9.137849329 -0.124536256 DGAPVATNAFHS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 DGAPVATNAFHSPR 14 0 Q96S52-2;Q96S52 Q96S52-2 PIGS GPI transamidase component PIG-S 1 0 DGAPVAT(0.35)NAFHS(0.65)PR 83.877 0.021188 264170000 2477.2 2086.9 2343.1 2046.3 2420.9 1822.9 2166.5 1941.4 2139.8 1997.6 TRUE FALSE FALSE 2186.826371 2151.194915 2469.775073 2129.756959 2242.31503 1788.13122 2250.062631 2162.401129 2051.596538 1985.718186 1.101277304 1.083333441 1.243769177 1.072537369 1.129221178 0.900495968 1.13312284 1.088976846 1.033176083 1 10.95544517 -9.137724715 0.924247104 1.000778196 1.093723138 0.125612489 0.080144933 0.827949114 1.290405431 0.050105874 0.014977268 7.28E-10 9.137724715 0.092944941 S(ph)SDGEDEQQVPK ddPTM_HeLa_CUDC101_4h_R1 1 SSDGEDEQQVPK 12 0 Q16649 Q16649 NFIL3 Nuclear factor interleukin-3-regulated protein 1 0 S(0.5)S(0.5)DGEDEQQVPK 175.21 6.41E-16 0 1715.3 1379 1605.6 1339.1 1436 1614 1477.8 1299.5 1500.6 2044.5 TRUE FALSE FALSE 1514.235134 1421.485355 1692.403593 1393.714286 1330.069141 1583.215639 1534.799241 1447.429827 1438.744633 2032.339223 0.745070073 0.699433116 0.832736766 0.685768532 0.654452331 0.779011506 0.755188516 0.712198934 0.707925437 1 10.98892551 -9.13720449 0.573340934 1.036625662 0.726340834 0 0.102231767 0.359500655 0.18046476 0.058804057 0.011554933 7.29E-10 9.13720449 -0.310284828 AAKNS(ph)EEEEEEK ddPTM_HeLa_CUDC101_4h_R1 1 AAKNSEEEEEEK 12 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 AAKNS(1)EEEEEEK 75.445 0.025107 4902100 2115.8 1018 2103.9 2260.7 1289.7 1531.5 1628.9 999.96 3207.4 5451.3 TRUE FALSE FALSE 1867.789131 1049.363373 2217.643198 2352.901118 1194.5614 1502.289189 1691.727219 1113.791404 3075.189614 5418.875425 0.344682058 0.193649658 0.409244174 0.434204689 0.220444522 0.277232649 0.312191569 0.205539216 0.567495905 1 12.40377777 -9.136149339 0.549803208 1.107377911 0.280992393 0.553228968 0.15353981 0.249007819 0.113440803 0.105972011 0.020291621 7.31E-10 9.136149339 -0.826385518 DFTNEAPPAPLPDASAS(ph)PLS(ph)PHRR ddPTM_HeLa_CUDC101_4h_R1 1 DFTNEAPPAPLPDASASPLSPHRR 24 1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 2 0 DFTNEAPPAPLPDAS(0.105)AS(0.944)PLS(0.951)PHRR 52.255 0.014856 15704000 5180.5 4815.6 3742.1 4328 5098.4 5024.9 4384.7 3805 5179.6 5006.1 TRUE FALSE FALSE 4573.249643 4963.962928 3944.409245 4504.514547 4722.301189 4929.058405 4553.819348 4238.14582 4966.094696 4976.323495 0.919001678 0.997516125 0.792635215 0.905189253 0.94895382 0.990502006 0.91509713 0.85166204 0.997944507 1 12.28086456 -9.134711947 0.560021909 1.011705231 0.91406034 0.260534472 0.057056926 1.437724902 0.684155754 0.073027009 0.014171989 7.33E-10 9.134711947 -0.097644891 LDFIESDS(ph)PCSSEALSK ddPTM_HeLa_CUDC101_4h_R1 2 LDFIESDSPCSSEALSK 17 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 LDFIES(0.004)DS(0.995)PCSS(0.001)EALSK;LDFIES(0.001)DS(0.995)PCS(0.003)SEALSK ; 216.93 1.67E-24 38011000 4706.2 4158.5 4435.5 4073.2 4162.6 4307.6 3693.8 2898.6 3851 3133.5 TRUE FALSE FALSE 4154.54637 4286.618456 4675.296547 4239.322702 3855.533291 4225.439707 3836.271103 3228.564907 3692.26015 3114.861803 1.333781925 1.376182549 1.500964358 1.360998648 1.237786308 1.35654163 1.231602346 1.036503419 1.185368849 1 11.60495244 -9.134538141 0.907501911 1.001266588 1.311196575 0.264221229 0.127491083 0.393530857 0.588456868 0.078850726 0.02325932 7.34E-10 9.134538141 0.309929987 (ac)ASEDNRVPS(ph)PPPTGDDGGGGGR ddPTM_HeLa_CUDC101_4h_R1 1 ASEDNRVPSPPPTGDDGGGGGR 22 1 E9PEM5;A0A494C1L5;P50851-2;P50851;A0A494C0R9 E9PEM5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 AS(0.354)EDNRVPS(0.627)PPPT(0.019)GDDGGGGGR 78.985 9.85E-05 17671000 132.82 126.54 96.661 0 189.94 58.621 122.84 303.69 111.45 282.31 TRUE FALSE FALSE 117.2510409 130.4385474 101.886786 0 175.9285046 57.50290209 127.5779799 338.260842 106.8559838 280.6308076 0.417812435 0.464804804 0.363063439 0 0.626903746 0.204905878 0.454611456 1.205358902 0.380770681 1 8.132529586 -9.134459013 0.807350211 1.014369378 0.442718589 0 0.351028907 0.614957061 0.698422161 0.217953801 0.057553297 7.34E-10 9.134459013 -0.571650789 SGELTALEFSAS(ph)PGLR ddPTM_HeLa_CUDC101_4h_R1 2 SGELTALEFSASPGLR 16 0 A0A2R8YFR7;Q12774;A0A2R8YF49;H0Y895;Q12774-2 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 SGELTALEFSAS(1)PGLR;SGELT(0.003)ALEFS(0.477)AS(0.52)PGLR ; 222.75 1.51E-32 10911400 2020.3 1971.21 1532.36 1439.83 1931.81 1959.66 1339.78 2012.53 2018.14 2204.47 TRUE FALSE FALSE 1783.483497 2031.940644 1615.204017 1498.552491 1789.304225 1922.282751 1391.455763 2241.62828 1934.951415 2191.357714 0.813871457 0.927251918 0.73707912 0.683846586 0.816527677 0.877210844 0.634974269 1.022940374 0.882992038 1 11.09760929 -9.134213008 0.529393584 1.031094705 0.798808422 0.135370012 0.11318199 1.181461816 0.493834199 0.138306597 0.025966311 7.34E-10 9.134213008 -0.232286283 LGLAVIHGEAQCTELDMDDGRHS(ph)PPMVK ddPTM_HeLa_CUDC101_4h_R1 5 LGLAVIHGEAQCTELDMDDGRHSPPMVK 28 1 C9J168;B4DP31;Q14558;Q14558-2;C9JUN4 C9J168 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 1 0 LGLAVIHGEAQCT(0.003)ELDMDDGRHS(0.997)PPMVK;LGLAVIHGEAQCT(0.026)ELDMDDGRHS(0.974)PPMVK;LGLAVIHGEAQCT(0.009)ELDMDDGRHS(0.991)PPMVK;LGLAVIHGEAQCT(0.36)ELDMDDGRHS(0.64)PPMVK;LGLAVIHGEAQCT(0.042)ELDMDDGRHS(0.958)PPMVK ;;;; 57.238 0.0010287 55281900 5533.2 5086.32 4755.49 4903.55 5453.66 5666.43 4969.78 4888.43 5583.04 3805.63 TRUE FALSE FALSE 4884.606684 5243.02349 5012.586174 5103.537964 5051.354367 5558.352289 5161.466079 5444.909111 5352.904728 3782.993944 1.291201296 1.385945515 1.325031509 1.349073787 1.335279528 1.469299812 1.364386556 1.439312141 1.41499162 1 11.88531275 -9.134068377 0.320497045 0.849896705 1.423267678 0 0.136461189 0.527967806 0.0775844 0.112275492 0.020659398 7.34E-10 9.134068377 0.573370973 NEGSES(ph)APEGQAQQR ddPTM_HeLa_CUDC101_4h_R1 4 NEGSESAPEGQAQQR 15 0 H0Y449;P67809;C9J5V9 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NEGS(0.08)ES(0.92)APEGQAQQR;NEGS(0.01)ES(0.99)APEGQAQQR;NEGS(0.168)ES(0.832)APEGQAQQR;NEGS(0.1)ES(0.9)APEGQAQQR ;;; 231.38 4.32E-43 113992400 6562.21 4880.46 4568.88 4566.06 4128.68 4113.7 3271.73 2433.42 5866.77 6030.99 TRUE FALSE FALSE 5792.997691 5030.821188 4815.887473 4752.283663 3824.115502 4035.238026 3397.921722 2710.430697 5624.939257 5995.117403 0.966285946 0.839153072 0.803301612 0.792692343 0.637871662 0.673087407 0.566781515 0.452106358 0.938253395 1 12.54957229 -5.310758354 0.371821966 1.013598918 0.314947226 0.940346685 0.041967752 0.385653572 0.063470102 0.013374073 0.108368738 4.89E-06 5.310758354 -0.698651692 down S(ph)PSGHPHVR ddPTM_HeLa_CUDC101_4h_R1 1 SPSGHPHVR 9 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 S(0.996)PS(0.004)GHPHVR 86.014 0.021994 2660300 377.2 184.24 316.4 351.11 274.53 287.8 361.01 143.75 383.91 367.71 TRUE FALSE FALSE 332.9851878 189.916216 333.5055411 365.4297834 254.2784688 282.3106945 374.9342766 160.1139189 368.0850673 365.5228446 0.910983247 0.519574136 0.912406833 0.999745403 0.695656845 0.772347608 1.025747863 0.438040799 1.007009747 1 8.513817765 -9.13385835 0.03932402 1.89416758 6.20E-08 0.211463117 0.180253625 230.3462582 2.468226484 69.0712955 50.32294507 7.35E-10 9.13385835 -1.894167518 SLS(ph)PGVSR ddPTM_HeLa_CUDC101_4h_R1 1 SLSPGVSR 8 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 S(0.129)LS(0.871)PGVSR 133.99 0.0051229 31698000 4609.4 3887.5 3791.5 3819.8 4330.5 4357.2 3772.6 4228.3 4116 4826.1 TRUE FALSE FALSE 4069.093119 4007.269267 3996.479959 3975.587955 4011.047643 4274.09367 3918.110446 4709.632581 3946.336738 4797.394143 0.848188204 0.835301238 0.833052245 0.82869738 0.836088827 0.89091985 0.816716394 0.98170641 0.822600066 1 12.22803526 -9.132959038 0.823677983 1.002986678 0.854983211 0 0.070853983 0.343471781 0.409306458 0.03174502 0.008559588 7.36E-10 9.132959038 -0.148003467 ERECSPS(ph)S(ph)PLPPLPEDEEGSEVTNSK ddPTM_HeLa_CUDC101_4h_R1 1 ERECSPSSPLPPLPEDEEGSEVTNSK 26 1 Q96GY3 Q96GY3 LIN37 Protein lin-37 homolog 2 0 ERECS(0.364)PS(0.803)S(0.833)PLPPLPEDEEGSEVTNSK 118.76 6.66E-10 30297000 2791.1 2478.1 2260.1 2442.4 2836.9 2406.2 2052.5 2413 2735.5 1110.5 TRUE FALSE FALSE 2463.931489 2554.447324 2382.287842 2542.011629 2627.627539 2360.305744 2131.665613 2687.686166 2622.741532 1103.894697 2.2320349 2.314031702 2.158075267 2.302766411 2.380324452 2.138162047 1.931040723 2.434730572 2.375898299 1 10.10838684 -9.132946727 0.682212486 0.906166659 2.243933778 0 0.444545307 0.178222098 0.13543707 0.137321897 0.031112471 7.36E-10 9.132946727 1.337767119 S(ph)QPCDLDAR ddPTM_HeLa_CUDC101_4h_R1 1 SQPCDLDAR 9 0 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 1 0 S(1)QPCDLDAR 113.61 0.0084338 16885000 2489.7 2320.7 2084.3 2282 2115.1 2302.3 1882.5 1662.6 1973.4 1463 TRUE FALSE FALSE 2197.86114 2392.198016 2196.983563 2375.069824 1959.073287 2258.387463 1955.108656 1851.863664 1892.055617 1454.298011 1.51128663 1.644915965 1.510683193 1.633138329 1.347092049 1.552905557 1.344365901 1.273372892 1.301009561 1 10.50610722 -9.132615643 0.875939313 0.997736028 1.481685635 0.384023595 0.147389459 0.270971121 0.373307075 0.083719564 0.023941166 7.37E-10 9.132615643 0.483949608 S(ph)AS(ph)PHDVDLCLVSPCEFEHR ddPTM_HeLa_CUDC101_4h_R1 2 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 0 S(1)AS(1)PHDVDLCLVSPCEFEHR;S(1)AS(1)PHDVDLCLVSPCEFEHR ; 125.35 6.77E-05 10140000 3181.3 2874.3 2831.6 2682.9 2981 2534.3 2743.7 2040 3141.7 1608.43 TRUE FALSE FALSE 2808.392837 2962.853776 2984.684861 2792.320258 2761.097569 2485.96245 2849.525428 2272.225354 3012.197796 1598.862987 1.756493746 1.853100485 1.866754616 1.746441241 1.726913183 1.554831446 1.782219897 1.421150763 1.883962429 1 10.6428306 -9.132258576 0.830683391 0.986756431 1.72183838 0 0.298728315 0.211783329 0.25755539 0.097503016 0.02652586 7.37E-10 9.132258576 0.735081949 QEAKPQQAAGMLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 QEAKPQQAAGMLSPK 15 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 QEAKPQQAAGMLS(1)PK;QEAKPQQAAGMLS(1)PK ; 113.33 0.0010785 126504000 12262.4 9460.3 9367.7 8804.5 7743.5 7676.6 6143.3 3556.6 11270.2 13804 TRUE FALSE FALSE 10825.02006 9751.76063 9874.146198 9163.585566 7172.277432 7530.181645 6380.249139 3961.468968 10805.63759 13721.89319 0.788886774 0.710671661 0.719590661 0.667807673 0.522688621 0.548771335 0.464968576 0.288696969 0.787474252 1 13.74419192 -5.234989209 0.207805454 1.055517434 1.86E-19 0.852514901 0.072943106 1.122198219 0.065950323 0.059386543 0.320126877 5.82E-06 5.234989209 -1.055517434 EGTAPSENGETKAEEAQKTESVDNEGE ddPTM_HeLa_CUDC101_4h_R1 1 EGTAPSENGETKAEEAQKTESVDNEGE 27 2 Q15651 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 0 0 63.63 0.013887 15961000 2073.2 2294.2 1884.3 2249.5 2579.2 2216 2548.5 2180.8 2295.6 2058.3 FALSE FALSE TRUE 1830.182639 2364.881583 1986.170958 2341.244333 2388.937554 2173.733492 2646.796499 2429.053457 2200.974396 2046.05714 0.894492438 1.155823822 0.970730934 1.144271236 1.167581055 1.062401166 1.2936083 1.187187498 1.07571502 1 10.99863072 -6.235586986 0.770430066 0.953718423 1.206501922 0.376342846 0.088450134 0.332519508 0.386344807 0.016390748 0.040257448 5.81E-07 6.235586986 0.252783499 EGTETFADHR ddPTM_HeLa_CUDC101_4h_R1 2 EGTETFADHR 10 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 ; ; 147.74 0.00059084 73314000 14801.4 11760.1 12709.5 12522.3 12927.4 12269.1 11923 12968.5 12965.1 12866.5 FALSE FALSE TRUE 13066.40233 12122.41474 13396.61401 13033.01352 11973.77146 12035.08736 12382.8741 14444.78162 12430.67309 12789.96949 1.021613253 0.947806385 1.047431273 1.019002706 0.936184521 0.940978583 0.968170731 1.129383587 0.971907955 1 13.6427252 SKS(ph)CDDGLNTFR ddPTM_HeLa_CUDC101_4h_R1 1 SKSCDDGLNTFR 12 1 Q9P227;Q9P227-2;A0A087X0Z0 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 SKS(1)CDDGLNTFR 136.14 0.0068489 18315000 1454.2 1508.6 1308.7 1013.7 1292.9 1094.3 1269.8 953.52 1203.8 675.52 TRUE FALSE FALSE 1283.74088 1555.078178 1379.452281 1055.043068 1197.525343 1073.428051 1318.776611 1062.064863 1154.178854 671.501977 1.911745497 2.315820699 2.054278808 1.571168967 1.783353413 1.598547864 1.963920668 1.581625816 1.718801871 1 9.391247837 -9.132190739 0.922381521 1.006776629 1.849987684 0.154405972 0.309459032 0.278064423 0.432107954 0.152231052 0.04572516 7.38E-10 9.132190739 0.843211055 (ac)AGAAS(ph)PCANGCGPGAPSDAEVLHLCR ddPTM_HeLa_CUDC101_4h_R1 1 AGAASPCANGCGPGAPSDAEVLHLCR 26 0 P19174-2;P19174 P19174-2 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" 1 0 AGAAS(0.999)PCANGCGPGAPS(0.001)DAEVLHLCR 40.428 0.0014065 0 463.15 415.2 400.92 274.68 429.82 418.58 392.1 520.51 493.49 495.21 TRUE FALSE FALSE 408.8602591 427.9918199 422.5949479 285.8826377 398.1130349 410.5962839 407.2234283 579.7627544 473.1481333 492.2644689 0.830570323 0.869434718 0.85847136 0.580750096 0.808738107 0.834096933 0.827245219 1.177746498 0.961166534 1 8.943289801 -9.132173334 0.787436319 1.005100055 0.837143223 0.124813743 0.136184023 1.018467951 1.091022222 0.104932817 0.027139583 7.38E-10 9.132173334 -0.167956832 SYS(ph)SPDITQAIQEEEKR ddPTM_HeLa_CUDC101_4h_R1 4 SYSSPDITQAIQEEEKR 17 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 S(0.011)YS(0.924)S(0.065)PDITQAIQEEEKR;S(0.034)YS(0.932)S(0.034)PDITQAIQEEEKR;S(0.097)YS(0.893)S(0.01)PDITQAIQEEEKR;S(0.026)YS(0.967)S(0.007)PDITQAIQEEEKR ;;; 232.6 1.28E-43 1955050000 11571.1 9698.2 9780.7 9611.5 10765.2 10106.6 10129.2 10412.9 10590.1 11581.6 TRUE FALSE FALSE 10214.7532 9996.990047 10309.47423 10003.49851 9971.072643 9913.833444 10519.88664 11598.26245 10153.5716 11512.71213 0.887258631 0.868343613 0.895486147 0.868908942 0.866092414 0.861120589 0.913762676 1.007430944 0.881944366 1 13.49094012 -9.131989442 0.836797701 1.001744944 0.892647719 0 0.054258273 0.436100982 0.539680085 0.029876698 0.008187575 7.38E-10 9.131989442 -0.109097225 EGVFAK(ac)EVR ddPTM_HeLa_CUDC101_4h_R1 2 EGVFAKEVR 9 1 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 1 ; EGVFAK(1)EVR;EGVFAK(1)EVR 101.97 0.010228 45388000 6618.8 5202.5 4194.1 5532.4 5645.6 5717.5 5377.5 5190.4 4194.9 3724.1 FALSE TRUE FALSE 5842.954297 5362.782859 4420.845732 5758.035185 5229.135336 5608.448214 5584.911976 5781.254156 4021.984446 3701.948888 1.578345481 1.448637737 1.194194157 1.555406452 1.412535801 1.514998825 1.508641028 1.561678546 1.086450561 1 11.85406926 -9.367869147 0.908505917 0.976725285 1.473965765 0.712820446 0.108295504 0.269733371 0.367812742 0.094814795 0.020429485 4.29E-10 9.367869147 0.49724048 EGVHGGLINK ddPTM_HeLa_CUDC101_4h_R1 2 EGVHGGLINK 10 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 0 ; ; 90.149 0.02614 43060000 8022.4 6753.2 7340.9 6955 6881.8 6451.1 6051.2 5920.2 7365.6 8720.2 FALSE FALSE TRUE 7082.026433 6961.258087 7737.771259 7238.654962 6374.143324 6328.056016 6284.596811 6594.131638 7061.98685 8668.331863 0.816999919 0.803067787 0.892648249 0.83506897 0.73533679 0.730020045 0.725006485 0.760715181 0.814688104 1 13.08153867 -13.52287875 0.112474904 1.748389295 0.649858529 0.275592044 0.068769431 29.86505282 0.245754907 5.102292236 0.24840453 3.00E-14 13.52287875 -1.098530766 EGVHGGLINK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EGVHGGLINKK 11 1 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 1 ; EGVHGGLINK(1)K;EGVHGGLINK(1)K 159.09 0.00012334 73259000 25018.5 10946.8 11558.9 9928.4 25391 21348.5 26436 18217.9 21613.6 16189.7 FALSE TRUE FALSE 22085.86936 11284.05793 12183.8091 10333.32307 23517.95652 20941.31293 27455.64538 20291.7521 20722.67826 16093.40294 1.372355457 0.701160468 0.757068542 0.642084406 1.461341433 1.301235854 1.706018638 1.260873922 1.287650495 1 13.9741818 EGVK(ac)FDDSEK ddPTM_HeLa_CUDC101_4h_R1 1 EGVKFDDSEK 10 1 Q58FF3 Q58FF3 HSP90B2P Putative endoplasmin-like protein 0 1 EGVK(1)FDDSEK 95.775 0.014129 802910 581.34 596.11 434.52 164.78 433.43 352.51 219.42 395.27 431.45 278.41 FALSE TRUE FALSE 513.1962065 614.4754425 458.0114656 171.5004406 401.4567324 345.7864591 227.8831029 440.2659391 413.6654484 276.7540049 1.854340668 2.220294672 1.654940696 0.619685488 1.450590507 1.249436152 0.82341393 1.59082048 1.49470447 1 8.112460384 EGVK(ac)FDESEK ddPTM_HeLa_CUDC101_4h_R1 2 EGVKFDESEK 10 1 P14625 P14625 HSP90B1 Endoplasmin 0 1 ; EGVK(1)FDESEK;EGVK(1)FDESEK 112.15 0.005252 4662600 4743.7 1793.3 2171.82 1933.92 4416.5 4233.5 4504 3723.9 4042 2779 FALSE TRUE FALSE 4187.650677 1848.549447 2289.235159 2012.793617 4090.703594 4152.753041 4677.720789 4147.813723 3875.387049 2762.470384 1.515907899 0.669165345 0.828691294 0.728620885 1.480813556 1.503275135 1.693310746 1.501487128 1.40287008 1 11.43174328 -5.548160424 24.48887363 1.133461231 1.564301682 0.443348875 0.270799339 171.4236906 166047.452 0.047022249 0.094047421 2.83E-06 5.548160424 0.430840451 EGVK(ac)TENNDHINLK ddPTM_HeLa_CUDC101_4h_R1 2 EGVKTENNDHINLK 14 1 P61956-2;P61956 P61956-2 SUMO2 Small ubiquitin-related modifier 2 0 1 ; EGVK(1)TENNDHINLK;EGVK(1)TENNDHINLK 202.92 2.58E-15 9710100 6134.2 5385 4893.9 4681.4 4668.3 4612.5 4871.4 5899.9 5387.2 6506.7 FALSE TRUE FALSE 5415.158375 5550.905467 5158.479037 4872.327727 4323.92881 4524.524247 5059.29153 6571.520768 5165.137336 6467.997859 0.837223279 0.858210777 0.797538767 0.753297672 0.668511169 0.699524698 0.782203649 1.016005402 0.798568189 1 12.65910349 -8.522111775 0.52665175 1.007185432 0.778248717 0.0069686 0.107727849 0.683531845 0.383997275 0.072275524 0.026966644 3.01E-09 8.522111775 -0.228936715 EGVKFDESEK(ac)TK ddPTM_HeLa_CUDC101_4h_R1 1 EGVKFDESEKTK 12 2 P14625 P14625 HSP90B1 Endoplasmin 0 1 EGVKFDESEK(1)TK 119.25 0.0028853 1343000 499.58 300.57 258.39 321.59 964.46 665.82 817.63 652.23 633.15 236.31 FALSE TRUE FALSE 441.0199897 309.8302054 272.359345 334.7058302 893.3137073 653.1205928 849.166263 726.4772268 607.051289 234.9044176 1.877444427 1.318962873 1.159447522 1.424859667 3.802881684 2.780367434 3.614943779 3.092650339 2.584248075 1 7.875930035 -5.771293657 24.99743869 1.395462756 3.304845769 0.742329727 0.502855167 54.05559132 137123.5402 0.058770118 0.107471293 1.69E-06 5.771293657 1.909383012 SDAEEDGGTVS(ph)QEEEDRKPK ddPTM_HeLa_CUDC101_4h_R1 2 SDAEEDGGTVSQEEEDRKPK 20 2 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 0 SDAEEDGGT(0.062)VS(0.938)QEEEDRKPK;SDAEEDGGT(0.028)VS(0.972)QEEEDRKPK ; 64.318 0.0071026 92099000 13669.1 11493.3 11249.7 12702.1 9763.4 9922.7 9778 12473.6 10167.1 16096.8 TRUE FALSE FALSE 12066.82882 11847.39495 11857.89281 13220.14654 9043.173433 9733.44103 10155.14074 13893.5442 9748.007835 16001.05552 0.754127052 0.740413339 0.741069412 0.826204654 0.565161056 0.608299935 0.634654428 0.868289232 0.6092103 1 13.96587946 -9.13133824 0.365807584 1.094526816 0.679032105 0 0.150252452 1.255753102 0.23792696 0.210270717 0.037077612 7.39E-10 9.13133824 -0.415494711 TVAISDAAQLPHDYCT(ph)T(ph)PGGTLFSTTPGGTR ddPTM_HeLa_CUDC101_4h_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 TVAISDAAQLPHDY(0.402)CT(0.395)T(0.395)PGGT(0.173)LFS(0.194)T(0.194)T(0.195)PGGT(0.051)R 70.051 2.14E-05 299980000 2439.8 2348.3 1897.6 1736.5 2413.9 2183.1 2131.7 2112.7 2058.6 1445.5 TRUE FALSE FALSE 2153.810342 2420.64834 2000.189996 1807.321976 2235.831406 2141.461005 2213.920383 2353.201228 1973.743637 1436.902102 1.498926294 1.684629967 1.392015499 1.257790613 1.556008168 1.490331876 1.540759374 1.637690713 1.373610376 1 10.48874606 -9.131237934 0.681889796 0.961005649 1.507695327 0.281890993 0.161220399 0.364823528 0.277164108 0.114800848 0.026055684 7.39E-10 9.131237934 0.546689678 HRS(ph)EPQHPK ddPTM_HeLa_CUDC101_4h_R1 2 HRSEPQHPK 9 1 A0A087WZ32;A0A087X038;A8K727;Q9HB19 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 HRS(1)EPQHPK;HRS(1)EPQHPK ; 83.045 0.017745 2020190 1827.93 1059.63 2058.34 1521.3 1874.22 1280.58 1836.62 961.89 2116.19 3247 TRUE FALSE FALSE 1613.662816 1092.275944 2169.620087 1583.34519 1735.962525 1256.15507 1907.459049 1071.38767 2028.959753 3227.6867 0.499944067 0.338408292 0.672190423 0.490551078 0.537834891 0.389181227 0.590967844 0.331936699 0.62861112 1 11.65628483 -9.131202329 0.629987605 1.053178854 0.477800506 0.330761889 0.152963764 0.326223785 0.205199802 0.103899691 0.022064825 7.39E-10 9.131202329 -0.575378348 ASGEMAS(ph)AQYITAALR ddPTM_HeLa_CUDC101_4h_R1 2 ASGEMASAQYITAALR 16 0 A6NJA2;P54578-2;P54578-3;P54578 A6NJA2 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 1 0 AS(0.023)GEMAS(0.968)AQY(0.009)ITAALR;AS(0.407)GEMAS(0.585)AQY(0.008)ITAALR ; 87.713 0.020624 43960000 6966.5 5431.4 5319.1 5131.9 5778.8 5600 4931 4064.6 6153.5 10785.9 TRUE FALSE FALSE 6149.897431 5598.734996 5606.666635 5341.201064 5352.509437 5493.18933 5121.190322 4527.297634 5899.850125 10721.74499 0.573591093 0.522185055 0.522924826 0.498165277 0.499219991 0.51234098 0.477645227 0.422253807 0.550269581 1 13.38825211 -9.131166025 0.410213255 1.136660581 0.465436626 0.131185913 0.1420297 0.153720287 0.036762344 0.044650819 0.007791519 7.39E-10 9.131166025 -0.671223955 RAVSEGCAS(ph)EDEVEGEA ddPTM_HeLa_CUDC101_4h_R1 1 RAVSEGCASEDEVEGEA 17 1 Q9BYX2-6;Q9BYX2-5;Q9BYX2-4;Q9BYX2-2;Q9BYX2 Q9BYX2-6 TBC1D2 TBC1 domain family member 2A 1 0 RAVS(0.014)EGCAS(0.986)EDEVEGEA 110.6 0.0020986 59711000 3106.8 2933.4 2582.3 2212.4 3147.8 2506.3 2545.9 2598.7 2757.2 1614.7 TRUE FALSE FALSE 2742.625614 3023.774577 2721.906949 2302.631235 2915.593065 2458.496503 2644.096216 2894.525504 2643.547049 1605.095693 1.70869913 1.88385938 1.695791074 1.434575674 1.816460588 1.531682201 1.647313757 1.803335164 1.646971617 1 10.6484436 -9.131016072 0.79099374 0.978069451 1.686910206 0.060277721 0.234143933 0.233518888 0.25297553 0.101686457 0.026450663 7.40E-10 9.131016072 0.708840755 EGVVGAVEK(ac)TK ddPTM_HeLa_CUDC101_4h_R1 2 EGVVGAVEKTK 11 1 O76070;F8W754 O76070 SNCG Gamma-synuclein 0 1 ; EGVVGAVEK(1)TK;EGVVGAVEK(1)TK 155.97 0.00011737 9464400 5556.5 5825.3 5989.3 6266.7 7229.7 6437.2 7140.2 8081.6 5237.7 6194.4 FALSE TRUE FALSE 4905.175493 6004.770588 6313.099675 6522.283113 6696.379435 6314.421135 7415.599906 9001.576677 5021.799789 6157.555433 0.796610854 0.975187419 1.025260713 1.059232545 1.087506155 1.025475321 1.204309078 1.461875053 0.815550886 1 12.588142 -1 0.440898333 0.913327001 12.50611567 0.821586373 0.075934834 26.3905251 0.290116769 0.020883284 276.2510956 0.1 1 11.59278867 EGVVGPELHHK ddPTM_HeLa_CUDC101_4h_R1 2 EGVVGPELHHK 11 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 122.69 0.0027696 17409100 11035.2 10013.7 11991 10904.8 11167.5 10967.5 10092 10818.7 10933.9 10868.9 FALSE FALSE TRUE 9741.670584 10322.21023 12639.26973 11349.54488 10343.69577 10758.31321 10481.25182 12050.25708 10483.20001 10804.2513 0.90165161 0.95538413 1.169842258 1.050470279 0.95737275 0.995748147 0.970104409 1.115325509 0.970284726 1 13.39931148 -6.943661594 24.99993229 0.952238837 1.036479739 0.296142715 0.064565057 90.40832973 40117.92767 0.011345753 0.01491124 1.14E-07 6.943661594 0.084240902 EGVVHGVATVAEK(ac)TK ddPTM_HeLa_CUDC101_4h_R1 2 EGVVHGVATVAEKTK 15 1 D6RA31;E7EPV7;A0A669KB41;A0A669KBH5;P37840-2;P37840 D6RA31 SNCA Alpha-synuclein 0 1 ; EGVVHGVATVAEK(1)TK;EGVVHGVATVAEK(1)TK 118.52 0.0082516 3022600 2426.2 2478 2416.2 2369.7 2341.3 2436.01 2597.5 2842.1 2116.98 2866.1 FALSE TRUE FALSE 2141.804514 2554.344243 2546.827081 2466.346609 2168.586964 2389.547168 2697.686445 3165.633176 2029.717188 2849.05231 0.751760333 0.896559264 0.893920786 0.865672631 0.76116081 0.838716495 0.946871504 1.111117955 0.712418365 1 11.4762664 -4.350599939 2.803928676 0.870198155 1.132241558 0.471957202 0.083887908 0.291817447 3.447782379 0.013539805 0.156510413 4.46E-05 4.350599939 0.262043403 EGYAWAEDKEHCEEYGR ddPTM_HeLa_CUDC101_4h_R1 2 EGYAWAEDKEHCEEYGR 17 1 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 0 ; ; 139.21 0.00011729 213660000 7605.7 6739.4 7437.9 7221.3 8241.3 7113.5 6640.2 7055.9 7180.2 4351.7 FALSE FALSE TRUE 6714.171375 6947.032926 7840.015372 7515.815827 7633.355718 6977.821839 6896.314738 7859.115135 6884.229117 4325.815895 1.552116766 1.605947432 1.812378419 1.737433125 1.764604852 1.613064913 1.594222895 1.816793716 1.591429059 1 12.07875655 -8.713876398 0.520273361 0.946134582 1.724475762 0.23676054 0.195334915 0.215538262 0.10827888 0.079460453 0.024033766 1.93E-09 8.713876398 0.77834118 EGYK(ac)FYPPK ddPTM_HeLa_CUDC101_4h_R1 2 EGYKFYPPK 9 1 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 1 ; EGYK(1)FYPPK;EGYK(1)FYPPK 142.92 0.0015975 4546800 4548.4 3978.6 4252.1 3695.6 4389.4 4194.4 4556 4738.9 4334.1 3696.5 FALSE TRUE FALSE 4015.243447 4101.17595 4481.981388 3846.322542 4065.602707 4114.398808 4731.726446 5278.357221 4155.446564 3674.513054 1.09272804 1.116114133 1.219748392 1.046757077 1.106433056 1.119712666 1.287715237 1.436478016 1.130883604 1 11.84333736 -1 0.453984791 1.050760648 10.07147042 0.724587065 0.06348716 27.01414191 0.289085041 0.014030438 228.3443585 0.1 1 9.020709771 EHALLAYTLGVK ddPTM_HeLa_CUDC101_4h_R1 4 EHALLAYTLGVK 12 0 Q5VTE0;P68104;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660 Q5VTE0;A0A2U3TZH3 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 0 ;;; ;;; 145.28 0.00012337 51896600 20934.2 18434.19 15459.23 18091.56 20318.68 18589.65 17518.68 16949.89 16790.42 16363.11 FALSE FALSE TRUE 18480.32481 19002.12554 16295.00274 18829.41202 18819.81146 18235.0834 18194.38136 18879.39696 16098.31178 16265.78149 1.136147367 1.168227026 1.001796486 1.157608813 1.157018583 1.12107023 1.118567919 1.160681826 0.98970417 1 13.98955252 -9.322471968 0.656180457 0.981920634 1.128511698 0.572942556 0.045651219 0.652121698 0.406816569 0.056297356 0.00958294 4.76E-10 9.322471968 0.146591064 EHAPSIIFMDEIDSIGSSR ddPTM_HeLa_CUDC101_4h_R1 1 EHAPSIIFMDEIDSIGSSR 19 0 P62195;J3QQM1;P62195-2;J3QSA9 P62195 PSMC5 26S protease regulatory subunit 8 0 0 152.9 3.08E-05 3174700 1085.5 1199.8 903.01 827.87 1259.2 1215.5 1387.4 856.03 1182.6 1335 FALSE FALSE TRUE 958.2593355 1236.764416 951.8294521 861.634117 1166.311325 1192.316363 1440.912483 953.476995 1133.852727 1327.059361 0.722092292 0.931958624 0.71724708 0.649280765 0.878868994 0.898464981 1.085793541 0.71848858 0.854409954 1 10.37401719 RQESAS(ph)RY(ph)AEQISVLK ddPTM_HeLa_CUDC101_4h_R1 1 RQESASRYAEQISVLK 16 2 Q6ZUS5;Q6ZUS5-2 Q6ZUS5 CCDC121 Coiled-coil domain-containing protein 121 2 0 RQES(0.004)AS(0.996)RY(0.994)AEQIS(0.007)VLK 56.527 0.03607 6709000 145.05 0 0 60.601 147.26 132.3 165.87 294.44 105.65 3851.7 TRUE FALSE FALSE 128.0474589 0 0 63.07257072 136.3969232 129.7765979 172.2676615 327.9578594 101.2950623 3828.789917 0.033443323 0 0 0.016473239 0.035624029 0.033894938 0.044992717 0.085655747 0.026456156 1 11.90267279 -9.13056212 0.668757104 1.079673223 0.016886909 0 0.300417598 0.081864116 0.059389128 0.049606059 0.011080042 7.40E-10 9.13056212 -1.062786314 EHDYRDEHFDFIQSHIR ddPTM_HeLa_CUDC101_4h_R1 2 EHDYRDEHFDFIQSHIR 17 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 0 0 ; ; 76.151 0.0067089 18961100 5432.2 4707.8 4825.1 4966.8 5806.6 5523.3 5238.3 3608.35 5736.3 7479.8 FALSE FALSE TRUE 4795.445751 4852.841738 5085.959501 5169.367572 5378.258686 5417.952255 5440.342986 4019.109979 5499.847286 7435.309817 0.644955741 0.652675121 0.684027919 0.695245753 0.723340226 0.728678749 0.731690154 0.540543713 0.739693089 1 12.86017714 -9.241021978 0.818006014 1.015119521 0.678380132 0.257771057 0.095523385 0.213935011 0.239429123 0.046505231 0.010819565 5.74E-10 9.241021978 -0.336739389 EHDYRDEHLDFIQSHLR ddPTM_HeLa_CUDC101_4h_R1 2 EHDYRDEHLDFIQSHLR 17 1 O43237;O43237-2;B4E2E0 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 0 0 ; ; 82.707 0.0040728 23888000 10082.4 8750.2 9926.8 9838.1 11171.2 10742.7 10656.2 8206.8 11568.3 11109.3 FALSE FALSE TRUE 8900.556356 9019.78329 10463.47283 10239.34024 10347.12283 10537.8009 11067.2132 9141.028939 11091.44978 11043.22139 0.805974637 0.816771028 0.947501863 0.927205919 0.936965987 0.954232513 1.002172538 0.82775022 1.004367239 1 13.43087346 EHEVFQR ddPTM_HeLa_CUDC101_4h_R1 4 EHEVFQR 7 0 O60884 O60884 DNAJA2 DnaJ homolog subfamily A member 2 0 0 ;;; ;;; 120.49 0.010983 35310600 11006 8949.3 11216.2 11471.4 10450 9897.9 9722.7 7973.1 11580.8 12478.8 FALSE FALSE TRUE 9715.893364 9225.017325 11822.5817 11939.25328 9679.124319 9709.114049 10097.7078 8880.725476 11103.43452 12404.57554 0.783250772 0.743678596 0.953082325 0.962487853 0.78028662 0.782704254 0.8140309 0.715923366 0.895107977 1 13.59858475 -9.325524468 0.932839181 1.005613962 0.819162622 0.249806768 0.082964262 0.490088719 0.727503593 0.064296034 0.01512978 4.73E-10 9.325524468 -0.186451339 EHEWFK ddPTM_HeLa_CUDC101_4h_R1 1 EHEWFK 6 0 Q13131;Q13131-2;A0A087WXX9;P54646 Q13131;A0A087WXX9 PRKAA1;PRKAA2 5-AMP-activated protein kinase catalytic subunit alpha-1;5-AMP-activated protein kinase catalytic subunit alpha-2 0 0 89.673 0.0015504 0 3581 3069.2 3276.3 3690.2 3724.8 2889 3399.1 3231.8 3713.5 3152.2 FALSE FALSE TRUE 3161.240608 3163.758414 3453.426688 3840.702306 3450.028925 2833.897138 3530.204426 3599.695049 3560.427958 3133.450574 1.008868828 1.009672353 1.102116215 1.225710192 1.101031863 0.904401417 1.126618832 1.14879586 1.136264279 1 11.61353652 -6.771665798 7.814082454 1.004628882 1.099339817 0.060297758 0.086346833 0.14832257 55.86731315 0.012445634 0.016784723 1.69E-07 6.771665798 0.094710936 EHFQDDVFNEK ddPTM_HeLa_CUDC101_4h_R1 1 EHFQDDVFNEK 11 0 A0A0C4DFS8;P43490 A0A0C4DFS8 NAMPT Nicotinamide phosphoribosyltransferase 0 0 86.911 0.027036 9018600 3898.4 3223.7 3672.8 3559.9 3498.4 3126.9 3346 2824.6 3695.3 3702.6 FALSE FALSE TRUE 3441.435462 3323.018376 3871.362678 3705.088109 3240.330002 3067.259592 3475.056341 3146.141047 3542.97817 3680.576771 0.935026132 0.902852619 1.051835872 1.006659646 0.880386473 0.83336384 0.944160809 0.854795659 0.962614935 1 11.84571615 -5.747451313 24.76289075 0.972275067 0.87968889 0.517728102 0.046372375 149.4231567 264519.9984 0.007145608 0.014233468 1.79E-06 5.747451313 -0.092586177 EHIEELLR ddPTM_HeLa_CUDC101_4h_R1 1 EHIEELLR 8 0 H0YMC2;B4DIH5;P61201;P61201-2 H0YMC2 COPS2 COP9 signalosome complex subunit 2 0 0 141.52 0.0040863 9612700 14771 12645 11608 11926 13486 12971 11915 11191 12704 12135 FALSE FALSE TRUE 13039.56577 13034.57746 12235.56359 12412.39383 12491.16465 12723.59979 12374.56554 12464.9382 12180.33574 12062.82048 1.080971552 1.080558024 1.014320292 1.028979404 1.035509454 1.054778176 1.025843464 1.033335299 1.009741939 1 13.55827965 EHIYDLR ddPTM_HeLa_CUDC101_4h_R1 4 EHIYDLR 7 0 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 0 0 ;;; ;;; 147.34 0.0079387 34496000 21809.2 19516.3 18030 19539 19815.1 18883.1 17587.7 17334 18678.7 18031.4 FALSE FALSE TRUE 19252.75864 20117.57407 19004.75634 20335.88487 18353.37955 18522.93633 18266.06348 19307.23249 17908.75608 17924.14843 1.074124035 1.122372655 1.060287824 1.134552358 1.023947086 1.03340677 1.019075665 1.077163167 0.999141251 1 14.12961696 -3.864430899 14.3784965 1.048160565 3.658038529 0.021875032 0.044904766 1588624.09 1044410.086 0.006710368 134901530.7 0.000136637 3.864430899 2.609877964 EHLELFWSR ddPTM_HeLa_CUDC101_4h_R1 2 EHLELFWSR 9 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ; ; 154.01 0.00027326 58219000 19422.8 11317.3 9289.4 11594.7 12895.3 12894.4 10672.6 9186.7 8833.1 7138 FALSE FALSE TRUE 17146.08883 11665.9726 9791.613063 12067.58198 11944.03941 12648.4608 11084.24576 10232.47679 8468.995879 7095.542859 2.41645906 1.64412686 1.379966728 1.700727093 1.683315801 1.782592404 1.562142035 1.442099216 1.193565601 1 12.79269735 -4.523372573 5.732901347 1.669538327 1.46733898 0 0.364956292 0.62985788 76.15002944 0.070923715 0.319422884 3.00E-05 4.523372573 -0.202199347 EHMQPTHPIR ddPTM_HeLa_CUDC101_4h_R1 4 EHMQPTHPIR 10 0 P61981 P61981 YWHAG "14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed" 0 0 ;;; ;;; 112.11 0.0031484 109165000 12459.7 11412 11288.6 10864.1 12963.4 10304.1 10615 10673.7 11449.1 11942.1 FALSE FALSE TRUE 10999.19285 11763.59019 11898.89586 11307.18496 12007.11581 10107.56646 11024.42411 11888.75086 10977.16325 11871.06786 0.926554627 0.990946251 1.002344187 0.952499395 1.011460464 0.851445429 0.928680068 1.001489588 0.924698888 1 13.5351621 -5.300857326 24.9847609 0.971067765 0.927352312 0.18070815 0.04424732 690.7186937 437805.6131 0.006420401 0.014356638 5.00E-06 5.300857326 -0.043715453 EHPDAWTR ddPTM_HeLa_CUDC101_4h_R1 4 EHPDAWTR 8 0 O14980;C9IYM2;H7BZC5;F8WF71;C9IZS4;C9JQ02;C9JV99;C9J673;C9JKM9 O14980 XPO1 Exportin-1 0 0 ;;; ;;; 141.52 0.0040863 51925300 15563.7 11811.6 11898.7 13082.9 14376.8 14100.9 11546.4 11281.1 13097.4 12885.4 FALSE FALSE TRUE 13739.34668 12175.5014 12541.97971 13616.47721 13316.25211 13831.94883 11991.74852 12565.29482 12557.51963 12808.75707 1.072652608 0.950560724 0.979172268 1.063059994 1.039620943 1.079882205 0.936214845 0.980992516 0.980385494 1 13.64484287 -4.747291433 24.99988985 1.029947311 0.958603664 0.226032743 0.043293587 227.8363517 402587.3138 0.006146496 0.022780521 1.79E-05 4.747291433 -0.071343647 DSEEEAAS(ph)PEGK ddPTM_HeLa_CUDC101_4h_R1 2 DSEEEAASPEGK 12 0 A0A3B3ITU7;Q9HB96 A0A3B3ITU7 FANCE Fanconi anemia group E protein 1 0 DS(0.016)EEEAAS(0.984)PEGK;DSEEEAAS(1)PEGK ; 172.33 7.54E-07 17092700 5129.4 3572.4 3796.5 3408.2 4070.7 3723.8 2887.5 2558.9 4151.2 15825.4 TRUE FALSE FALSE 4528.139508 3682.46141 4001.750274 3547.201127 3770.412571 3652.774719 2998.871842 2850.194833 3980.085779 15731.26982 0.287843229 0.234085452 0.254381898 0.225487273 0.239676302 0.232198339 0.190631264 0.181180214 0.253004737 1 13.94134751 -9.129923865 0.518284616 1.133811148 0.201188404 0 0.232520471 0.08182386 0.032662744 0.037974159 0.007086522 7.41E-10 9.129923865 -0.932622745 EHPWEVMPDLYFYRDPEEIEKEEQAAAEK ddPTM_HeLa_CUDC101_4h_R1 3 EHPWEVMPDLYFYRDPEEIEKEEQAAAEK 29 2 C9J9K3;A0A0C4DG17;P08865 C9J9K3 RPSA 40S ribosomal protein SA 0 0 ;; ;; 49.745 0.0082454 156750000 10325.23 10149.28 9885.76 9434.66 11557.95 9825.43 9388.41 9404.72 11877.97 11691.27 FALSE FALSE TRUE 9114.922191 10461.96729 10420.21409 9819.446215 10705.34306 9638.026293 9750.524119 10475.31531 11388.35505 11621.72981 0.784299957 0.90020741 0.896614726 0.844921228 0.921148851 0.829310822 0.838990777 0.90135595 0.979919103 1 13.5045372 -9.536419309 1.29230999 1.000150965 0.856153985 0.598938347 0.040511666 0.24862631 0.742384113 0.031374529 0.007443975 2.91E-10 9.536419309 -0.14399698 KEQSEVSVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 KEQSEVSVSPR 11 1 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 KEQSEVS(0.008)VS(0.992)PR 119.21 0.0090261 23421000 1650.7 1304.5 1439.7 1648.8 1364.2 1485.7 1357.7 1382.1 1401.1 1727 TRUE FALSE FALSE 1457.207448 1344.690099 1517.534537 1716.045191 1263.565684 1457.362748 1410.066944 1539.432677 1343.346065 1716.727727 0.848828516 0.78328676 0.883969259 0.99960242 0.7360315 0.848918978 0.821369004 0.896725004 0.782503855 1 10.74544553 -9.129655388 0.746193249 1.007326284 0.85045711 0 0.094457577 0.585052891 0.551836632 0.055008612 0.013571442 7.42E-10 9.129655388 -0.156869174 S(ph)TSSSSDTMSTFKPMVAPR ddPTM_HeLa_CUDC101_4h_R1 1 STSSSSDTMSTFKPMVAPR 19 1 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 S(0.325)T(0.325)S(0.325)S(0.019)S(0.002)S(0.002)DT(0.001)MSTFKPMVAPR 95.307 0.0013046 13228000 845.71 782.46 755.47 674.16 680.48 478.9 456.5 348.69 759.13 1045.6 TRUE FALSE FALSE 746.5771558 806.5666652 796.3129934 701.6551588 630.2823461 469.7657804 474.1073579 388.3834601 727.8383401 1039.380725 0.718290361 0.776006949 0.766141775 0.675070397 0.606401804 0.451966993 0.456144074 0.373668138 0.700261533 1 10.02150849 -5.19339579 0.175399822 1.071279061 7.04E-20 0.707936358 0.09586867 2.647864449 0.12100803 0.148906143 0.685348101 6.41E-06 5.19339579 -1.071279061 FACHSAS(ph)LTVR ddPTM_HeLa_CUDC101_4h_R1 1 FACHSASLTVR 11 0 Q15233;Q15233-2;C9JYS8;C9IZL7 Q15233 NONO Non-POU domain-containing octamer-binding protein 1 0 FACHS(0.035)AS(0.965)LTVR 112.64 0.0062336 8706900 844.69 717.19 702.44 719.32 923.49 801.18 769.04 586.42 834.12 554.11 TRUE FALSE FALSE 745.6767187 739.2857738 740.4160312 748.6569788 855.3659826 785.8988264 798.7021304 653.1756824 799.7372205 550.8141291 1.353771952 1.342169227 1.344221203 1.359182598 1.552912203 1.426794966 1.450039293 1.185836833 1.451918494 1 9.105421757 -9.127684703 0.489662787 0.925506111 1.402895522 0 0.165884454 0.580826299 0.204199266 0.133475027 0.024328794 7.45E-10 9.127684703 0.477389411 EHVEEISELFYDAK ddPTM_HeLa_CUDC101_4h_R1 2 EHVEEISELFYDAK 14 0 Q9Y265;H7C4G5 Q9Y265 RUVBL1 RuvB-like 1 0 0 ; ; 187.74 3.66E-11 15117400 13143.8 10605.8 10573.5 9535.9 11439.7 11179.6 10449 9179 12181.6 11754.1 FALSE FALSE TRUE 11603.10369 10932.55213 11145.13539 9924.81522 10595.81612 10966.36776 10852.02143 10223.90026 11679.46929 11684.18609 0.993060501 0.935670833 0.953864934 0.849422899 0.906851024 0.938564969 0.928778551 0.87502032 0.999596309 1 13.51226962 -7.00316632 1.507512389 0.997875835 0.905569616 0.685637092 0.027349943 0.151301287 0.674195716 0.00491017 0.006480272 9.93E-08 7.00316632 -0.092306219 EHVIEALR ddPTM_HeLa_CUDC101_4h_R1 2 EHVIEALR 8 0 X1WI28;P27635;F8W7C6;A0A087WV22;H7C123;H7C2C5 X1WI28 RPL10 60S ribosomal protein L10 0 0 ; ; 98.582 0.018623 19356900 19892.2 13811.9 12987.4 14513.7 11397.1 12727.9 12398.5 12061.8 13067.6 12142.5 FALSE FALSE TRUE 17560.46647 14237.42827 13689.53813 15105.63142 10556.35864 12485.13651 12876.7143 13434.86656 12528.948 12070.27587 1.454852123 1.179544562 1.134152879 1.251473585 0.874574761 1.034370436 1.06681193 1.113053811 1.038000136 1 13.55917103 -5.785820325 24.97414441 1.212428116 1.026258151 0.218928497 0.132402775 273.7607791 280420.8396 0.026252888 0.047604166 1.64E-06 5.785820325 -0.186169966 EHYAELR ddPTM_HeLa_CUDC101_4h_R1 1 EHYAELR 7 0 Q13232 Q13232 NME3 Nucleoside diphosphate kinase 3 0 0 83.265 0.0019634 0 919.39 778.6 747.96 712.9 972.35 665.23 779.48 641.97 756.67 907.03 FALSE FALSE TRUE 811.6204979 802.5877431 788.3969801 741.9751434 900.6216777 652.5418461 809.5448047 715.0492699 725.4797423 901.6349452 0.900165308 0.890147113 0.87440819 0.822921901 0.998876189 0.72373176 0.897863164 0.793058514 0.804626913 1 9.816399622 -13.5228785 0.083274168 1.499367889 0.717827163 0 0.089388531 103.1052387 0.656242823 9.313433724 0.947268455 3.00E-14 13.5228785 -0.781540727 LNVS(ph)KALEAALVEK ddPTM_HeLa_CUDC101_4h_R1 2 LNVSKALEAALVEK 14 1 P49454 P49454 CENPF Centromere protein F 1 0 LNVS(1)KALEAALVEK;LNVS(1)KALEAALVEK ; 89.629 0.0085181 13790500 4610.2 3978.7 3577.3 3821.1 3574.9 3828.5 3319 3592.6 4014 5694.4 TRUE FALSE FALSE 4069.799345 4101.279031 3770.699659 3976.940974 3311.186749 3755.477741 3447.014942 4001.567062 3848.541221 5660.529456 0.718978565 0.724539827 0.66613904 0.702574027 0.584960608 0.663449907 0.608956277 0.706924519 0.67989068 1 12.46672129 -9.126992497 0.375440121 1.103965226 0.635439471 0.017559327 0.106342544 0.400145804 0.080039809 0.076786867 0.013540053 7.46E-10 9.126992497 -0.468525755 FELPAMTDNTNVNY(ph)VRYK ddPTM_HeLa_CUDC101_4h_R1 1 FELPAMTDNTNVNYVRYK 18 1 H0YCN8 H0YCN8 BCO2 1 0 FELPAMTDNTNVNY(0.5)VRY(0.5)K 56.872 0.02268 420250000 3329 3031.2 2904.5 2980.6 2989.3 2472.3 2573.5 2733.6 3320.7 619.07 TRUE FALSE FALSE 2938.779666 3124.587679 3061.526056 3102.161751 2768.785295 2425.144997 2672.760757 3044.781974 3183.81934 615.3877441 4.775492679 5.077429164 4.974954547 5.040987217 4.499253229 3.940840584 4.343214149 4.947745553 5.173680124 1 9.265351901 -9.126173061 0.75629791 0.840428286 4.706328484 0 1.323771524 0.151579379 0.14787023 0.35288798 0.088546791 7.48E-10 9.126173061 3.865900197 EHYVDLK ddPTM_HeLa_CUDC101_4h_R1 1 EHYVDLK 7 0 Q32Q12;P22392-2;J3KPD9;E7ERL0;E5RHP0;P15531;P15531-2 Q32Q12;P15531 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 0 101.99 0.018127 119970000 16909 14516 13988 14522 13720 12967 12474 12273 14912 15316 FALSE FALSE TRUE 14926.95265 14963.22075 14744.23359 15114.26993 12707.90293 12719.67608 12955.12636 13670.10871 14297.32105 15224.89975 0.980430275 0.982812432 0.968428944 0.992733626 0.834678923 0.835452206 0.850917022 0.897878405 0.939074889 1 13.89414511 -5.765005271 24.9999906 0.988143994 0.853082054 0.860832072 0.02388914 16.77569838 117613.4095 0.002785582 0.005196955 1.72E-06 5.765005271 -0.13506194 EIADGLCLEVEGK ddPTM_HeLa_CUDC101_4h_R1 2 EIADGLCLEVEGK 13 0 Q5W0H4;A0A0B4J2C3;P13693;J3KPG2;E9PJF7 Q5W0H4 TPT1 Translationally-controlled tumor protein 0 0 ; ; 201.6 4.77E-16 12615500 5455.2 5125.6 4249 4280.3 4894.7 4815 4007.6 4568 5072 4562.4 FALSE FALSE TRUE 4815.749726 5283.513661 4478.713793 4454.869135 4533.627733 4723.161897 4162.174474 5088.002656 4862.930013 4535.262642 1.06184583 1.164985157 0.987531296 0.982273682 0.999639512 1.041430733 0.91773615 1.121876076 1.072248819 1 12.14697039 TPTCQSS(ph)TDCSPYAR ddPTM_HeLa_CUDC101_4h_R1 1 TPTCQSSTDCSPYAR 15 0 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 T(0.001)PT(0.006)CQS(0.103)S(0.386)T(0.386)DCS(0.118)PYAR 91.701 0.010038 8959600 1484 1548.3 1073.6 1312.7 1370.3 1348.5 1269.1 752.68 1592.5 835.21 TRUE FALSE FALSE 1310.04777 1596.001288 1131.642063 1366.23758 1269.215699 1322.779609 1318.049612 838.3620488 1526.856476 830.2421338 1.577910487 1.922332321 1.363026541 1.64558931 1.528729569 1.593245579 1.587548449 1.009780177 1.839049614 1 9.697388339 -9.125965164 0.920233035 1.004580275 1.541157246 0 0.337047821 0.385124927 0.596418875 0.133739108 0.040387405 7.48E-10 9.125965164 0.536576971 EIAQDFK(ac)TDLR ddPTM_HeLa_CUDC101_4h_R1 2 EIAQDFKTDLR 11 1 K7EK07;P84243;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;Q71DI3;P68431;Q16695 K7EK07;Q71DI3 H3F3B;H3F3A;HIST2H3A;HIST1H3A;HIST3H3 Histone H3;Histone H3.3;Histone H3.2;Histone H3.1;Histone H3.1t 0 1 ; EIAQDFK(1)TDLR;EIAQDFK(1)TDLR 134.38 0.00067567 838140 214.97 163.02 61.245 71.049 165.08 200.214 429.67 74.125 0 0 FALSE TRUE FALSE 189.7715425 168.042453 64.55608996 73.94668532 152.9023773 196.3952515 446.2425158 82.56309038 0 0 0 LTTEATQT(ph)PVSNK ddPTM_HeLa_CUDC101_4h_R1 1 LTTEATQTPVSNK 13 0 Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6 Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 LTTEAT(0.011)QT(0.989)PVSNK 143.58 2.91E-05 0 2276.8 1745.1 2047.5 1698.4 1590.6 1370.9 1028.6 511.76 1831 2680.6 TRUE FALSE FALSE 2009.916955 1798.864463 2158.194043 1767.668093 1473.264607 1344.752367 1068.273447 570.0166898 1755.525405 2664.655672 0.754287684 0.675083269 0.809933556 0.663375802 0.552891176 0.504662715 0.400904874 0.213917579 0.658818857 1 11.3797334 -5.177825497 0.258108136 0.990145572 1.53E-21 0.710108712 0.112363543 1.312080511 0.104260112 0.056951637 0.405917171 6.64E-06 5.177825497 -0.990145572 down EIDDTYIEDAADVDAR ddPTM_HeLa_CUDC101_4h_R1 2 EIDDTYIEDAADVDAR 16 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 0 0 ; ; 332.56 2.06E-190 92898000 5960 4915.3 4736.9 4294.8 4993.6 5228.6 4710.2 4444.6 5781.3 5791.8 FALSE FALSE TRUE 5261.377835 5066.734567 4992.991142 4469.960508 4625.232077 5128.873166 4891.873992 4950.555298 5542.992367 5757.350116 0.91385407 0.880046283 0.867237712 0.776391989 0.803361266 0.890839199 0.849674571 0.859866987 0.962767984 1 12.49118923 -7.817318795 0.654245688 0.989025683 0.837529303 0.731656834 0.033010607 0.227392855 0.219984047 0.012975436 0.010187325 1.52E-08 7.817318795 -0.15149638 EIDELIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EIDELIKK 8 1 Q9Y3A5;A0A087X020 Q9Y3A5 SBDS Ribosome maturation protein SBDS 0 1 ; EIDELIK(1)K;EIDELIK(1)K 137 0.002676 1395840 1905.24 1028.01 765.82 804.68 2564.78 2249.94 2481.58 1469.76 1666.4 1025.64 FALSE TRUE FALSE 1681.910655 1059.68177 807.2225457 837.4983285 2375.581289 2207.026143 2577.295372 1637.071537 1597.710287 1019.539448 1.64967688 1.039372995 0.791752146 0.821447694 2.330053334 2.164728543 2.527901571 1.605697103 1.56709021 1 9.993701881 -5.75219591 24.99856589 1.2183964 2.184126731 0.668585874 0.346606987 104.2439679 281921.223 0.05578135 0.110340823 1.77E-06 5.75219591 0.965730331 SMGTGDTPGLEVPSS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 4 SMGTGDTPGLEVPSSPLR 18 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SMGTGDTPGLEVPS(0.226)S(0.774)PLR;SMGTGDTPGLEVPS(0.032)S(0.968)PLR;SMGTGDTPGLEVPS(0.231)S(0.769)PLR;SMGTGDTPGLEVPS(0.025)S(0.975)PLR ;;; 217.32 5.94E-25 213235000 18314.7 15399 15114.3 14021.1 17395.8 16497.4 15216.9 18790.1 17473.6 18940 TRUE FALSE FALSE 16167.87863 15873.42494 15931.42478 14592.94106 16112.54649 16182.73958 15803.82093 20929.08903 16753.33081 18827.34404 0.858744526 0.843104843 0.84618546 0.77509292 0.855805602 0.859533854 0.839407879 1.11163258 0.889840371 1 14.20054187 -9.125158534 0.872508147 1.000506808 0.866520619 0.033671924 0.090167518 0.642058994 0.878743685 0.0546951 0.015727012 7.50E-10 9.125158534 -0.13398619 EIEDFDSLEALR ddPTM_HeLa_CUDC101_4h_R1 2 EIEDFDSLEALR 12 0 P46060;B0QYT5;B0QYT4 P46060 RANGAP1 Ran GTPase-activating protein 1 0 0 ; ; 260.98 9.18E-69 30059000 7050.7 5673.5 4592.7 4613.4 4746.2 5074.2 4430.3 4201.7 5700.8 6125.4 FALSE FALSE TRUE 6224.227634 5848.29381 4840.995254 4801.554393 4396.082282 4977.418089 4601.178155 4680.004544 5465.810611 6088.965848 1.022214246 0.96047407 0.795043916 0.788566484 0.721975191 0.817448843 0.755658394 0.76860417 0.89765828 1 12.57198151 -6.79973473 2.855054742 1.010282549 0.770281304 0.829465532 0.042582169 0.032923184 0.551204752 0.003712936 0.005140859 1.59E-07 6.79973473 -0.240001245 EIEDK(ac)ILEVLSMSK ddPTM_HeLa_CUDC101_4h_R1 1 EIEDKILEVLSMSK 14 1 Q8TD57 Q8TD57 DNAH3 "Dynein heavy chain 3, axonemal" 0 1 EIEDK(1)ILEVLSMSK 60.157 0.036948 2660200 524.59 1955.8 1548 1627.9 3676.7 2924.1 2875.6 1217.9 2461.9 921.3 FALSE TRUE FALSE 463.0983554 2016.05588 1631.689562 1694.292798 3405.477166 2868.327664 2986.512855 1356.540813 2360.41944 915.8200666 0.50566522 2.201366789 1.781670463 1.850028035 3.718500271 3.131977305 3.261025789 1.481230716 2.577383403 1 9.838920366 -6.688839768 1.109112854 0.771175732 2.856146674 0.183798052 0.882571416 0.213326912 0.525179733 0.126069154 0.200685157 2.05E-07 6.688839768 2.084970942 EIEELKELLPEIR ddPTM_HeLa_CUDC101_4h_R1 2 EIEELKELLPEIR 13 1 P49321;P49321-3;P49321-4;P49321-2;H0YDS9;E9PRH9;H0YF33;Q5T624 P49321 NASP Nuclear autoantigenic sperm protein 0 0 ; ; 121.21 0.0026051 23570000 6148.9 5985.5 5592.3 6094.8 7183.9 6376.9 5645.9 6270.4 7069.4 6745.1 FALSE FALSE TRUE 5428.135263 6169.90616 5894.636654 6343.372288 6653.958009 6255.271257 5863.664254 6984.19699 6777.99634 6704.979845 0.809567723 0.92019757 0.879143083 0.946068808 0.992390456 0.932929166 0.87452377 1.041643249 1.01088989 1 12.71101728 -6.112307083 6.874623872 0.90666954 0.954286035 0.028169379 0.067712139 0.55186237 30.0924453 0.011977213 0.019965011 7.72E-07 6.112307083 0.047616495 EIEHVMYHDWR ddPTM_HeLa_CUDC101_4h_R1 1 EIEHVMYHDWR 11 0 C9JJ19;P82930 C9JJ19 MRPS34 "28S ribosomal protein S34, mitochondrial" 0 0 91.313 0.017464 5658700 2354 1744.4 978.5 1389.3 1538.6 1673.3 1325 857.48 1043.8 1232.4 FALSE FALSE TRUE 2078.067688 1798.142896 1031.40067 1445.961659 1425.100543 1641.38459 1376.105694 955.0920571 1000.774122 1225.06963 1.696285368 1.467788322 0.841911875 1.180309775 1.16328126 1.339829631 1.123287738 0.779622671 0.816912033 1 10.25864804 -6.781851819 24.99503456 1.348412536 1.095065236 0.033186646 0.278454167 362.7618989 444200.6257 0.048959938 0.064387362 1.65E-07 6.781851819 -0.2533473 EIEIDIEPTDK ddPTM_HeLa_CUDC101_4h_R1 2 EIEIDIEPTDK 11 0 S4R3E9;Q15843;F8VSA6;E9PS38;E9PL57 S4R3E9 NEDD8-MDP1;NEDD8 NEDD8 0 0 ; ; 196.27 1.91E-15 24365000 11361.9 8374.5 8171.6 8943.9 8106.5 8173 7267.7 6924.6 10019.8 10213.6 FALSE FALSE TRUE 10030.07531 8632.508419 8613.381414 9308.670901 7508.499645 8017.113642 7548.017624 7712.868474 9606.779603 10152.84905 0.987907459 0.850254778 0.848370873 0.916853078 0.739546073 0.789641765 0.743438377 0.759675283 0.946215151 1 13.30959701 -6.533137277 0.594050956 1.004581743 0.743266667 0.76659296 0.045816234 0.207927983 0.148638964 0.010630339 0.022713987 2.93E-07 6.533137277 -0.261315076 EIEIDIEPTDKVER ddPTM_HeLa_CUDC101_4h_R1 2 EIEIDIEPTDKVER 14 1 S4R3E9;Q15843;F8VSA6;E9PS38;E9PL57 S4R3E9 NEDD8-MDP1;NEDD8 NEDD8 0 0 ; ; 183.89 8.33E-11 108181000 8609.8 7672.1 8260.8 7934.2 9518.4 8466.2 7539.2 7895 9205.6 8205.2 FALSE FALSE TRUE 7600.572296 7908.468307 8707.403836 8257.790971 8816.246595 8304.721341 7829.989469 8793.734887 8826.141272 8156.395105 0.931854354 0.969603385 1.067555424 1.012431456 1.080899893 1.018185269 0.95998163 1.078139886 1.082113012 1 12.99371595 -6.788668739 20.45889835 0.967054541 1.032867132 0.018341106 0.052033568 22.7010013 17056.20383 0.006561892 0.008627687 1.63E-07 6.788668739 0.065812591 EIELTHR ddPTM_HeLa_CUDC101_4h_R1 1 EIELTHR 7 0 O43395;O43395-3 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 0 0 113.41 0.00026307 0 1244.7 1055.1 1225.3 894.11 1037.5 1385.1 1135.3 814.08 1260 1558.4 FALSE FALSE TRUE 1098.798153 1087.60638 1291.543424 930.5756705 960.965692 1358.681525 1179.088901 906.7515766 1208.062267 1549.130567 0.709299898 0.702075347 0.833721477 0.600708352 0.620325822 0.877060691 0.761129453 0.585329343 0.779832438 1 10.59724303 -9.228432139 0.623930092 1.037482612 0.709810174 0.188072492 0.112812945 0.593072384 0.34565714 0.109096294 0.02027616 5.91E-10 9.228432139 -0.327672438 EIELYGCPPDFPDEEEEEEETSVK ddPTM_HeLa_CUDC101_4h_R1 1 EIELYGCPPDFPDEEEEEEETSVK 24 0 A0A6I8PRU9;A0A6I8PTV8;A0A6I8PIP7;A0A6I8PLB3;A0A6I8PLB8;A0A6I8PRS0;B4DER1;A0A6I8PIT3;A0A6I8PIV1;Q9P2J5-2;Q9P2J5 A0A6I8PRU9 LARS "Leucine--tRNA ligase, cytoplasmic" 0 0 123.14 1.47E-08 3839900 2857.5 2558.3 2104.7 2050.9 1958.2 2184.5 1733.3 1490.8 2297.5 1210.6 FALSE FALSE TRUE 2522.548182 2637.118191 2218.486448 2134.544567 1813.747487 2142.834302 1800.153962 1660.506646 2202.796078 1203.399297 2.09618552 2.191390835 1.84351649 1.773762517 1.507186759 1.780651116 1.49589082 1.37984678 1.830478115 1 10.2328997 VTDALPEPEPPGAMAAS(ph)EDEEEEEEALEAMQSR ddPTM_HeLa_CUDC101_4h_R1 1 VTDALPEPEPPGAMAASEDEEEEEEALEAMQSR 33 0 Q9Y3E7-2;Q9Y3E7-4;Q9Y3E7;Q9Y3E7-3 Q9Y3E7-2 CHMP3 Charged multivesicular body protein 3 1 0 VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR 123.45 2.18E-18 4693000 9212.4 8402.2 7477 7706.6 8706.5 7737.3 7732.1 7410.8 8816.3 6445.6 TRUE FALSE FALSE 8132.536437 8661.061823 7881.229237 8020.908459 8064.238841 7589.723894 8030.329687 8254.415517 8452.888382 6407.261285 1.269268737 1.351757239 1.230046487 1.251846632 1.258609331 1.184550396 1.253317031 1.288290761 1.319267001 1 12.64549211 -9.12398557 0.81630185 0.99434325 1.259706991 0 0.105648587 0.198591928 0.232491025 0.032697799 0.008840152 7.52E-10 9.12398557 0.265363741 NIIEATHMYDNAAEACSTTEEVFNS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 NIIEATHMYDNAAEACSTTEEVFNSPR 27 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 NIIEATHMYDNAAEACST(0.001)TEEVFNS(0.998)PR;NIIEATHMYDNAAEACS(0.001)T(0.016)T(0.002)EEVFNS(0.981)PR;NIIEATHMYDNAAEACST(0.001)T(0.001)EEVFNS(0.997)PR;NIIEATHMY(0.158)DNAAEACS(0.004)T(0.022)T(0.134)EEVFNS(0.682)PR ;;; 203.93 6.56E-24 159881000 10099.8 9177.1 8827.8 7972.93 9784.4 9539.7 8054.5 6439.02 9117.4 5133.77 TRUE FALSE FALSE 8915.916754 9459.835573 9305.057571 8298.100547 9062.624305 9357.746117 8365.164763 7172.012009 8741.576913 5103.234108 1.747111061 1.853694221 1.823364826 1.626047399 1.775859017 1.833689366 1.639188912 1.405385655 1.712948442 1 12.31719611 -9.123506679 0.801097061 0.980903836 1.72310498 0 0.25127913 0.224748349 0.251702399 0.102738197 0.027302688 7.52E-10 9.123506679 0.742201144 EIEMSVDDDDINSSK ddPTM_HeLa_CUDC101_4h_R1 3 EIEMSVDDDDINSSK 15 0 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 0 0 ;; ;; 270.27 6.72E-85 20352600 3255.93 2939.11 2760.63 2795.61 3453.41 3107.27 2924.29 3281.54 2955.41 2930.66 FALSE FALSE TRUE 2874.274821 3029.660495 2909.878008 2909.627059 3198.658824 3048.004002 3037.080845 3655.097249 2833.586749 2913.228304 0.986628757 1.039966724 0.998849971 0.99876383 1.097977395 1.046263349 1.042513846 1.254655272 0.972662096 1 11.50840305 -1 0.6971651 1.000492673 29.85835415 0.798176896 0.035292054 80.06877323 0.40100365 0.005589964 3605.272482 0.1 1 28.85786148 EIENMILNDPDFQHEDLNFLTR ddPTM_HeLa_CUDC101_4h_R1 1 EIENMILNDPDFQHEDLNFLTR 22 0 K7ELT1;I3L0T4;Q15067-2;Q15067 K7ELT1 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 0 0 55.718 0.018654 6361600 871.82 966.77 920.65 593.5 1235.9 968.74 837.84 1027.3 973.07 974.88 FALSE FALSE TRUE 769.6265812 996.5550378 970.4231238 617.7054953 1144.730119 950.2628985 870.1557695 1144.24368 932.9596427 969.0813704 0.794181588 1.028350217 1.001384562 0.637413446 1.181252838 0.980581123 0.897918169 1.180750879 0.962725805 1 9.920473999 -5.709637341 24.99999997 0.902631909 1.042857297 0.237619096 0.135574991 132.7166318 64049.03907 0.019980008 0.039959986 1.95E-06 5.709637341 0.140225388 WNS(ph)IEER ddPTM_HeLa_CUDC101_4h_R1 1 WNSIEER 7 0 Q9UNE7;H3BTA3;H3BS86;Q9UNE7-2;H3BUD0 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 0 WNS(1)IEER 87.568 0.036202 6995300 2411.1 1949.4 2075.4 1943.4 2459.2 2154.7 2039.5 2060.2 1931.6 3155.8 TRUE FALSE FALSE 2128.474513 2009.458703 2187.602402 2022.660252 2277.789715 2113.602687 2118.164198 2294.72484 1851.97863 3137.029161 0.678500072 0.640561053 0.697348443 0.64476935 0.726097718 0.673759337 0.675213423 0.731496178 0.590360668 1 11.61518322 -9.123061693 0.725350009 1.017505521 0.679855913 0 0.129356411 0.136663285 0.120830999 0.027267662 0.006608979 7.53E-10 9.123061693 -0.337649608 GHTDTEGRPPS(ph)PPPTS(ph)TPEK ddPTM_HeLa_CUDC101_4h_R1 1 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 0 GHT(0.017)DT(0.188)EGRPPS(0.795)PPPT(0.199)S(0.434)T(0.366)PEK 69.649 0.010036 53976000 4018.8 3339.5 3828.2 3350.9 3803.3 3479.4 3076 3379.7 3827.2 1480.2 TRUE FALSE FALSE 3547.722356 3442.386037 4035.164072 3487.564186 3522.738136 3413.036242 3194.64235 3764.431387 3669.441196 1471.395705 2.411127303 2.339537914 2.742405771 2.370242196 2.394147356 2.319591006 2.171164657 2.558408574 2.493850692 1 10.52296957 -9.122645995 0.690602977 0.90190108 2.423854658 0 0.480567736 0.165465797 0.130131628 0.145518251 0.033763718 7.54E-10 9.122645995 1.521953578 EIEQEAAVELSQLRDPQHDLDR ddPTM_HeLa_CUDC101_4h_R1 3 EIEQEAAVELSQLRDPQHDLDR 22 1 P47985 P47985 UQCRFS1 "Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11" 0 0 ;; ;; 122.1 3.13E-07 19070800 7304.65 6187.58 4159.04 6033.48 7472.97 6262.84 5551.98 5127.38 4711.59 5129.02 FALSE FALSE TRUE 6448.41 6378.212006 4383.890283 6279.551393 6921.703891 6143.386762 5766.121728 5711.060214 4517.376266 5098.512361 1.264763041 1.250994713 0.859837139 1.23164385 1.357592843 1.204937112 1.130941993 1.120142467 0.886018498 1 12.31586064 HGGVCAPAAVAT(ph)SPPGAIPK ddPTM_HeLa_CUDC101_4h_R1 2 HGGVCAPAAVATSPPGAIPK 20 0 A0A494BZT8;Q9Y6A5;E7EMT0 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 HGGVCAPAAVAT(0.593)S(0.407)PPGAIPK;HGGVCAPAAVAT(0.5)S(0.5)PPGAIPK ; 92.098 0.0022807 111357000 9190.6 8482.4 8620.3 8251.6 7882.6 7990.8 6933.6 5087.7 9138.2 1080.17 TRUE FALSE FALSE 8113.2918 8743.73269 9086.339493 8588.135914 7301.116302 7838.388804 7201.031275 5666.863203 8761.519528 1073.745101 7.556068749 8.143210789 8.462287266 7.998300442 6.799673681 7.300046163 6.70646252 5.277661522 8.159776023 1 10.06843583 -9.121795847 0.800568089 0.834500198 7.347704542 0 2.349202427 0.185620617 0.207700802 0.744013664 0.198021132 7.55E-10 9.121795847 6.513204344 FNGEDIDTIS(ph)PTLGFNIK ddPTM_HeLa_CUDC101_4h_R1 1 FNGEDIDTISPTLGFNIK 18 0 V9GYD0;P36404-2;P36404 V9GYD0 ARL2-SNX15;ARL2 ADP-ribosylation factor-like protein 2 1 0 FNGEDIDT(0.078)IS(0.922)PTLGFNIK 153.49 5.07E-05 33159000 2719 2378.9 2193.5 2242.4 2458.3 2203 2345.6 2118.1 2769.5 2931 TRUE FALSE FALSE 2400.282942 2452.191089 2312.087245 2333.854764 2276.956107 2160.981445 2436.070578 2359.215942 2655.340038 2913.566282 0.823829874 0.841645891 0.793559172 0.801030263 0.781501393 0.741696339 0.836112977 0.809734777 0.911371076 1 11.50857042 -9.121316156 0.441927127 1.046499883 0.789529462 0.723219616 0.036561416 0.385334041 0.10854169 0.044818589 0.007979008 7.56E-10 9.121316156 -0.256970421 EIESEIDSEEELINK ddPTM_HeLa_CUDC101_4h_R1 3 EIESEIDSEEELINK 15 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 0 ;; ;; 343.87 1.18E-216 53332600 5164.67 4820.32 4640.05 4173.75 5164.7 4451.59 4476.52 4627.4 5316.93 6036 FALSE FALSE TRUE 4559.275212 4968.828346 4890.905138 4343.973565 4783.710371 4366.683338 4649.180876 5154.164511 5097.763895 6000.097604 0.759866841 0.828124586 0.815137596 0.723983817 0.797272092 0.727768717 0.774850875 0.859013445 0.849613495 1 12.55077025 -9.32518923 0.695382928 1.026396914 0.780164829 0.355483459 0.061336044 0.31441204 0.22579951 0.047155029 0.008393861 4.73E-10 9.32518923 -0.246232085 DTSLDFRPVVS(ph)PANGVEGVR ddPTM_HeLa_CUDC101_4h_R1 2 DTSLDFRPVVSPANGVEGVR 20 1 Q8ND24 Q8ND24 RNF214 RING finger protein 214 1 0 DT(0.001)S(0.002)LDFRPVVS(0.997)PANGVEGVR;DT(0.01)S(0.012)LDFRPVVS(0.978)PANGVEGVR ; 83.891 0.0016418 32989000 1524.88 1039.05 1173.34 1230.8 1195.12 1240.94 940.79 929.24 1371.09 1677.6 TRUE FALSE FALSE 1346.135878 1071.061899 1236.77431 1280.997344 1106.958379 1217.271137 977.0765854 1035.020925 1314.57309 1667.621561 0.807219042 0.64226916 0.741639673 0.768158301 0.663794715 0.729944471 0.585910262 0.620656958 0.788292213 1 10.70357621 -9.121172721 0.172491276 1.269470281 0.54048809 0.43031067 0.085533529 2.604110183 0.145951349 0.488574595 0.146643126 7.57E-10 9.121172721 -0.728982192 DDSFDS(ph)LDSFGSR ddPTM_HeLa_CUDC101_4h_R1 1 DDSFDSLDSFGSR 13 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 DDS(0.03)FDS(0.969)LDS(0.001)FGSR 115.24 0.00323 10655000 1574.1 1329.2 1158.1 1116 1391.6 1528.9 1572.8 1786.8 1676 2704.2 TRUE FALSE FALSE 1389.586384 1370.151077 1220.710389 1161.515304 1288.94444 1499.73878 1633.463423 1990.20209 1606.914571 2688.115298 0.516937047 0.50970696 0.454113851 0.432092814 0.479497454 0.557914603 0.60766122 0.740370806 0.597784839 1 11.3923793 -9.12088116 0.782216664 1.015052765 0.529715358 0.158727749 0.14775537 0.244616635 0.259156773 0.072375469 0.018867863 7.57E-10 9.12088116 -0.485337407 EIFDDDLEDDALDADEK ddPTM_HeLa_CUDC101_4h_R1 2 EIFDDDLEDDALDADEK 17 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 0 0 ; ; 321.86 3.25E-166 12531600 7696.9 4762.3 3932.5 4238.2 3257 4353.7 3680.6 2427 4540.4 5011 FALSE FALSE TRUE 6794.68105 4909.020818 4145.102845 4411.052115 3016.737599 4270.660426 3822.561975 2703.27987 4353.24279 4981.194349 1.364066642 0.985510798 0.832150395 0.885541058 0.605625356 0.857356715 0.767398681 0.542697128 0.873935543 1 12.28227599 -6.813274165 2.291319713 1.171709308 0.741743996 0.449212721 0.159816166 0.152589367 1.641762332 0.027523754 0.03837734 1.54E-07 6.813274165 -0.429965312 EIGFSDK(ac)QISK ddPTM_HeLa_CUDC101_4h_R1 1 EIGFSDKQISK 11 1 P31327-2;P31327;P31327-3;A0A669KBF2 P31327-2 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" 0 1 EIGFSDK(1)QISK 138.25 0.00046039 281170 171.07 147.95 0 250.47 251.61 236.42 232.53 153.74 187.97 377.2 FALSE TRUE FALSE 151.0174339 152.5081641 0 260.6852492 233.0492316 231.9106824 241.49876 171.2411402 180.221797 374.9563976 0.402759987 0.40673573 0 0.695241502 0.621536885 0.618500401 0.644071581 0.456696142 0.480647345 1 8.550579029 -9.238572637 0.968829903 1.000377001 0.482386568 0 0.245105134 0.376717433 0.633965511 0.134469129 0.036996612 5.77E-10 9.238572637 -0.517990433 EIGLLSEEVELYGETK ddPTM_HeLa_CUDC101_4h_R1 2 EIGLLSEEVELYGETK 16 0 A0A494C1T2;V9GZ78;V9GYY3;A0A384N5Y3;F5H2F4;P11586 A0A494C1T2 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed" 0 0 ; ; 224.42 6.65E-32 5646100 1934.36 1578.86 1420.09 1535.6 1653.13 1412.91 1650.64 1444.74 1515.43 1850.45 FALSE FALSE TRUE 1707.617253 1627.502805 1496.864361 1598.228405 1531.181893 1385.961096 1714.305738 1609.203362 1452.963334 1839.443441 0.928333655 0.88478002 0.813759384 0.868865207 0.83241586 0.753467633 0.931969801 0.874831661 0.789892911 1 10.8450536 -7.622420655 0.844011958 0.984670557 0.84418055 0 0.076197473 0.248700415 0.374295913 0.012380261 0.011879077 2.39E-08 7.622420655 -0.140490007 EIHQDWANR ddPTM_HeLa_CUDC101_4h_R1 3 EIHQDWANR 9 0 Q8WUW1;Q8WUW1-2 Q8WUW1 BRK1 Protein BRICK1 0 0 ;; ;; 121.5 0.0049343 49688000 12284.4 11082.3 10527.6 11430.3 11931.9 10441.2 10114 10065 11181.1 8690.9 FALSE FALSE TRUE 10844.44125 11423.73253 11096.7539 11896.47704 11051.70751 10242.05151 10504.10037 11210.75892 10720.21033 8639.20614 1.255258999 1.322312761 1.284464535 1.377033589 1.279250353 1.185531557 1.215864073 1.297660773 1.240879098 1 13.07668303 -8.933047989 0.72149451 0.994937889 1.27865315 0.166895811 0.088229787 0.255680851 0.241900949 0.040560283 0.012274199 1.17E-09 8.933047989 0.28371526 EIHQFNR ddPTM_HeLa_CUDC101_4h_R1 4 EIHQFNR 7 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ;;; ;;; 120.49 0.010983 32766500 15655.7 12188.2 14984.8 14869.4 14322.7 13361.9 13201.3 12535.2 14344.2 14109.7 FALSE FALSE TRUE 13820.56258 12563.704 15794.92361 15475.8384 13266.14296 13107.04402 13710.47856 13962.1565 13752.926 14025.77488 0.985368915 0.895758281 1.126135544 1.103385627 0.945840288 0.934496963 0.977520221 0.995464181 0.98054661 1 13.77579286 EIIDLVLDR ddPTM_HeLa_CUDC101_4h_R1 1 EIIDLVLDR 9 0 Q9BQE3;F5H5D3;A0A1W2PQM2;F8VVB9;F8VQQ4;F8VS66;F8VRZ4;P68363;Q71U36-2;Q71U36 Q9BQE3;P68363 TUBA1C;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain 0 0 158.76 0.00045498 80190000 5839.6 4395.3 4185.8 4181.1 4696.3 4983.8 4416.4 4047.5 4688.4 4872.9 FALSE FALSE TRUE 5155.09094 4530.713983 4412.097009 4351.62333 4349.863305 4888.742319 4586.742027 4508.251039 4495.142168 4843.915774 1.064240416 0.935341198 0.910853371 0.898368909 0.898005562 1.009254196 0.946907882 0.930703846 0.927997591 1 12.24195806 -7.247188607 23.95253897 1.030335751 0.932757483 0.204525658 0.046342009 235.5640095 395933.3254 0.006476494 0.007910941 5.66E-08 7.247188607 -0.097578268 EIIDPVLDR ddPTM_HeLa_CUDC101_4h_R1 2 EIIDPVLDR 9 0 P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8 P68366-2 TUBA4A Tubulin alpha-4A chain 0 0 ; ; 133.57 0.015093 48555000 21986.8 19729.2 18378.4 17930.6 20286.1 18998.4 19001.9 18393 20048.8 19644 FALSE FALSE TRUE 19409.54063 20337.03327 19371.9919 18661.88737 18789.63482 18636.03717 19734.80965 20486.78477 19222.37998 19527.15661 0.993976799 1.041474377 0.992053901 0.955688928 0.962230968 0.95436512 1.010634064 1.049143261 0.984392165 1 14.25319427 -6.524120354 24.99873256 1.001179375 0.983557999 0.068996068 0.030128155 93.74093178 1887376.838 0.004829861 0.006863164 2.99E-07 6.524120354 -0.017621376 FS(ph)PPEPGDTPTDEPDALYVACQGQPK ddPTM_HeLa_CUDC101_4h_R1 1 FSPPEPGDTPTDEPDALYVACQGQPK 26 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 FS(0.999)PPEPGDTPTDEPDALYVACQGQPK 56.366 0.002258 0 1328.6 1219.4 1081.1 1262.4 1021.7 1148.6 1081.8 1100 1292.2 667.79 TRUE FALSE FALSE 1172.863522 1256.968269 1139.547536 1313.886129 946.3312265 1126.692369 1123.525388 1225.219554 1238.934969 663.8179554 1.766845131 1.893543642 1.716656693 1.979286818 1.425588475 1.697291192 1.692520335 1.845716199 1.86637761 1 9.374643843 -9.120425891 0.774094067 0.973428615 1.750677283 0 0.300013474 0.240075765 0.248160671 0.1132611 0.02925507 7.58E-10 9.120425891 0.777248668 SSTETCYS(ph)AIPK ddPTM_HeLa_CUDC101_4h_R1 2 SSTETCYSAIPK 12 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 0 SSTETCY(0.024)S(0.976)AIPK;SSTET(0.011)CY(0.02)S(0.969)AIPK ; 207.34 2.67E-23 46529000 5327.9 3439.4 3488.2 4108.5 4030.4 1720.43 962.2 570.99 3355.5 3362.6 TRUE FALSE FALSE 4703.371639 3545.363837 3676.782643 4276.062388 3733.085422 1687.615664 999.3123763 635.9891936 3217.18487 3342.599106 1.407100131 1.060660799 1.099977152 1.279262709 1.116821163 0.504881265 0.298962677 0.190267864 0.962480025 1 11.70675462 -5.157172162 2.430048709 1.186113213 0.245847839 0.888526701 0.131369123 0.076937227 0.87523537 0.023168358 0.072735774 6.96E-06 5.157172162 -0.940265374 down EILSDDKHDWDQR ddPTM_HeLa_CUDC101_4h_R1 1 EILSDDKHDWDQR 13 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;C9J668;D6RBU8;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 0 0 62.694 0.040439 9483900 4214 2986.8 3047.9 3047.9 3654.8 3362 3136.6 3031.1 3517.3 3183.1 FALSE FALSE TRUE 3720.041308 3078.819768 3212.678693 3172.206536 3385.192685 3297.875451 3257.579713 3376.148172 3372.315405 3164.16678 1.175678012 0.973027019 1.015331655 1.002540876 1.069852799 1.042257151 1.029522127 1.06699438 1.065783077 1 11.62760993 -7.232548389 24.92908416 1.082959086 1.029157033 0.196728767 0.048045531 1136.579184 980717.6008 0.011495652 0.014078323 5.85E-08 7.232548389 -0.053802053 EILSEVER ddPTM_HeLa_CUDC101_4h_R1 2 EILSEVER 8 0 B4DUR8;P49368-2;P49368 B4DUR8 CCT3 T-complex protein 1 subunit gamma 0 0 ; ; 141.52 0.024476 31854000 4637 3798.6 3615.9 3716.2 3987.5 3864.5 3493.7 4148.9 4074.5 3635.6 FALSE FALSE TRUE 4093.457889 3915.630364 3811.386491 3867.762699 3693.350069 3790.791101 3628.453179 4621.194006 3906.547385 3613.97529 1.132674565 1.083469047 1.054624392 1.070223892 1.021963288 1.048925573 1.004006084 1.278701052 1.080955754 1 11.81937093 -9.562731768 1.349454626 1.000186534 1.085838101 0.013448448 0.076588956 0.626160256 2.050610029 0.048380192 0.011491899 2.74E-10 9.562731768 0.085651567 GHVS(ph)PQVELPPYLER ddPTM_HeLa_CUDC101_4h_R1 2 GHVSPQVELPPYLER 15 0 Q8N5D0-5;Q8N5D0-3;Q8N5D0-6;Q8N5D0-2;Q8N5D0-4;Q8N5D0 Q8N5D0-5 WDTC1 WD and tetratricopeptide repeats protein 1 1 0 GHVS(1)PQVELPPYLER;GHVS(1)PQVELPPYLER ; 117.53 0.00014141 5658500 4133.3 3472.2 3543.7 3376.4 3905.5 3744.1 3672.6 3270.2 3618 4310.6 TRUE FALSE FALSE 3648.80084 3579.174366 3735.283141 3514.104186 3617.399046 3672.687531 3814.253412 3642.466349 3468.864509 4284.960359 0.851536662 0.835287626 0.871719416 0.820101913 0.844208287 0.857111203 0.890149054 0.850058354 0.809544131 1 12.06506614 -9.119568599 0.716930412 1.008494731 0.851495357 0 0.061397243 0.188055335 0.161960558 0.017340188 0.004176728 7.59E-10 9.119568599 -0.156999374 ASVS(ph)PMDEPVPDS(ph)ESPIEK ddPTM_HeLa_CUDC101_4h_R1 1 ASVSPMDEPVPDSESPIEK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 AS(0.156)VS(0.844)PMDEPVPDS(0.669)ES(0.331)PIEK 158.12 6.80E-05 6744100 3859.7 3751.5 2817.3 3109.1 3510.7 3701.8 3173.3 3286.8 3569.6 3724.5 TRUE FALSE FALSE 3407.271817 3867.079268 2969.61176 3235.902537 3251.722655 3631.194333 3295.695244 3660.956026 3422.459577 3702.346508 0.920300628 1.04449415 0.802089095 0.874013961 0.878286959 0.98078187 0.89016391 0.988820473 0.924402827 1 11.85422421 -9.119402944 0.523340225 1.01236239 0.915711771 0.006300468 0.069012067 1.826968555 0.750132435 0.088244565 0.01676723 7.60E-10 9.119402944 -0.096650619 LPLQES(ph)EEEEREER ddPTM_HeLa_CUDC101_4h_R1 1 LPLQESEEEEREER 14 1 P23497;P23497-2;P23497-3;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;C9JBL0 P23497 SP100 Nuclear autoantigen Sp-100 1 0 LPLQES(1)EEEEREER 61.226 0.039467 64459000 1279.7 1132.2 888.09 1232.9 1088.8 1012.7 1046 1112.1 1264.2 1860.1 TRUE FALSE FALSE 1129.695506 1167.08174 936.1028317 1283.182991 1008.481393 993.3844348 1086.34457 1238.696969 1212.089141 1849.036042 0.610964567 0.631183878 0.506265324 0.693974028 0.545409267 0.537244495 0.587519413 0.669914994 0.655524886 1 10.85255763 -9.119360636 0.589955949 1.049273912 0.585163976 0.182062725 0.119493909 0.251781468 0.136483783 0.062371855 0.012786817 7.60E-10 9.119360636 -0.464109936 EIPVSIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 EIPVSIKK 8 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 0 1 EIPVSIK(1)K 106.42 0.0068516 694070 1155.1 735.24 782.81 1103.7 744.8 787.29 863.99 741.38 715.58 814.29 FALSE TRUE FALSE 1019.700929 757.8918729 825.1310765 1148.713657 689.8575879 772.273755 897.3143837 825.7757024 686.0834895 809.4465669 1.259750762 0.936308713 1.019376831 1.419134633 0.852258341 0.954076262 1.108552955 1.02017321 0.847595774 1 9.660792038 EIPYTFEDR ddPTM_HeLa_CUDC101_4h_R1 2 EIPYTFEDR 9 0 P34897-3;P34897-2;P34897;G3V2Y4;H0YIZ0 P34897-3 SHMT2 "Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase" 0 0 ; ; 158.07 0.00048729 27936900 5515.5 4555.4 4352.5 4863.7 5073.4 4349.1 4045.1 4208.8 4278.1 4436.8 FALSE FALSE TRUE 4868.981451 4695.746475 4587.809316 5062.062709 4699.14539 4266.148164 4201.120862 4687.912779 4101.754907 4410.409716 1.10397486 1.064696202 1.04022293 1.147753391 1.06546686 0.967290669 0.952546619 1.062920019 0.930016749 1 12.10669697 -5.270101939 24.44587117 1.059204581 0.990081854 0.137114734 0.061403059 480.5945839 1356246.463 0.007774628 0.017642884 5.37E-06 5.270101939 -0.069122728 IVS(ph)GSPISTPSPS(ph)PLPR ddPTM_HeLa_CUDC101_4h_R1 1 IVSGSPISTPSPSPLPR 17 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 2 0 IVS(0.296)GS(0.308)PIS(0.163)T(0.234)PS(0.393)PS(0.606)PLPR 132.9 0.002363 9508200 1409 1284.6 1145.4 1106.8 1207.5 1160.7 1128.2 1521.9 1780.1 1578.1 TRUE FALSE FALSE 1243.839156 1324.177003 1207.323789 1151.940088 1118.425131 1138.561581 1171.715052 1695.146944 1706.723525 1568.713391 0.792904021 0.844116593 0.76962675 0.734321575 0.71295696 0.725793244 0.746927424 1.080596975 1.08797664 1 10.61536608 -9.118770699 0.648309366 1.01818269 0.788023351 0.440272197 0.105876662 0.774932774 0.525220819 0.099897361 0.022061009 7.61E-10 9.118770699 -0.230159339 QTGYGWICQECDSSSS(ph)KEDENEAERK ddPTM_HeLa_CUDC101_4h_R1 1 QTGYGWICQECDSSSSKEDENEAERK 26 2 A0A0U1RRH6;O94880-2 A0A0U1RRH6 PHF14 PHD finger protein 14 1 0 QTGYGWICQECDS(0.134)S(0.134)S(0.134)S(0.598)KEDENEAERK 68.569 0.00017978 23651000 1823.6 1583.6 1651.3 1632.4 1686 1326.1 1741.4 1643 1805.2 528.41 TRUE FALSE FALSE 1609.840372 1632.388839 1740.574273 1698.976328 1561.627139 1300.806852 1808.566381 1830.032479 1730.788892 525.2669938 3.064803978 3.107731607 3.313694356 3.23450045 2.973015928 2.476467905 3.443137305 3.484004326 3.295065009 1 9.036907123 -9.118267242 0.620226517 0.778014768 3.167858051 0 0.757631776 0.239522915 0.146185045 0.313533479 0.066844371 7.62E-10 9.118267242 2.389843283 IVSGSPIS(ph)T(ph)PSPSPLPR ddPTM_HeLa_CUDC101_4h_R1 1 IVSGSPISTPSPSPLPR 17 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 2 0 IVS(0.006)GS(0.304)PIS(0.689)T(0.687)PS(0.069)PS(0.245)PLPR 147.39 0.00053474 8234200 1749.6 1426.7 1597.6 1329.6 1549.9 1472.7 1560.3 1752.6 1958.3 1909.2 TRUE FALSE FALSE 1544.51454 1470.654936 1683.971088 1383.826835 1435.566965 1444.610701 1620.481294 1952.1089 1877.578045 1897.843993 0.813825871 0.774908233 0.887307436 0.729157317 0.756419901 0.761185169 0.853853794 1.028592923 0.989321594 1 10.89014569 -9.117851149 0.792549413 1.005062481 0.818932675 0.39862525 0.082257515 0.55353495 0.605748033 0.063075697 0.016711084 7.62E-10 9.117851149 -0.186129805 S(ph)VEDDEEGHLICQSGDVLSAR ddPTM_HeLa_CUDC101_4h_R1 2 SVEDDEEGHLICQSGDVLSAR 21 0 F8WBF5;P49759;P49759-3 F8WBF5 CLK1 Dual specificity protein kinase CLK1 1 0 S(1)VEDDEEGHLICQSGDVLSAR;S(1)VEDDEEGHLICQSGDVLSAR ; 106.72 2.34E-05 45428000 3271.6 2710.1 2886.1 2685.3 2648.3 3120.5 3994.5 3422.5 2748.5 1284.42 TRUE FALSE FALSE 2888.108007 2793.594969 3042.131296 2794.818141 2452.940185 3060.981662 4148.569203 3812.103566 2635.205667 1276.780213 2.26202441 2.187999893 2.382658554 2.188957906 1.9211922 2.397422541 3.249243027 2.985716357 2.063946199 1 10.31829448 -9.11778748 0.179865611 1.54E-25 3.116702836 0.454253026 0.423741099 3.59831431 0.213776885 2.953527116 0.856286285 7.62E-10 9.11778748 3.116702836 RAS(ph)FAEK ddPTM_HeLa_CUDC101_4h_R1 2 RASFAEK 7 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 RAS(1)FAEK;RAS(1)FAEK ; 82.831 0.022182 65798000 8980.6 3029.9 10850.8 12207 6916.5 7550.8 10522 4034.3 12223.9 15588.4 TRUE FALSE FALSE 7927.907682 3123.247628 11437.42707 12704.85422 6406.283575 7406.78107 10927.83706 4493.548405 11720.02567 15495.6795 0.511620525 0.201556029 0.738104261 0.819896554 0.413423856 0.477990079 0.70521832 0.28998718 0.756341512 1 13.9195784 -9.117594054 0.837862713 1.006714274 0.529061502 0.314717469 0.198430769 0.437916794 0.546512291 0.130752244 0.036521972 7.63E-10 9.117594054 -0.477652772 IIS(ph)NASCTTNCLAPLAK ddPTM_HeLa_CUDC101_4h_R1 4 IISNASCTTNCLAPLAK 17 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 IIS(0.679)NAS(0.003)CT(0.051)T(0.267)NCLAPLAK;IIS(1)NASCTTNCLAPLAK;IIS(0.91)NAS(0.009)CT(0.04)T(0.04)NCLAPLAK;IIS(0.975)NAS(0.023)CTT(0.001)NCLAPLAK ;;; 201.18 1.00E-16 236477000 11908.4 11202.9 10452.3 9719.3 10290.7 10248.4 10014 8892.6 8883.5 1716.08 TRUE FALSE FALSE 10512.5154 11548.04807 11017.38295 10115.69506 9531.575563 10052.92884 10400.24333 9904.897639 8517.31837 1705.87268 6.162543974 6.769583807 6.458502492 5.929923835 5.587507014 5.893129636 6.09672894 5.80635223 4.992939081 1 10.73629426 -9.117520738 0.741717983 0.759552979 6.121672229 0.350641538 1.255242234 0.118522364 0.110803345 0.378621287 0.094324979 7.63E-10 9.117520738 5.36211925 GVS(ph)CFR ddPTM_HeLa_CUDC101_4h_R1 1 GVSCFR 6 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 1 0 GVS(1)CFR 94.006 0.039118 9439000 2113.1 1799.2 1825.5 1886.1 2244.5 1959.2 1701.9 1712.5 1788.7 735.73 TRUE FALSE FALSE 1865.405621 1854.631219 1924.192052 1963.02331 2078.927707 1921.831524 1767.542853 1907.444078 1714.969029 731.3538452 2.550619831 2.535887699 2.631000116 2.684095152 2.842574385 2.627772503 2.416809407 2.608100156 2.344923788 1 9.514425773 -9.117303119 0.590901514 0.805544174 2.653290904 0.254981734 0.424939853 0.139429523 0.075950893 0.137579848 0.028310584 7.63E-10 9.117303119 1.84774673 SGNS(ph)DSIER ddPTM_HeLa_CUDC101_4h_R1 1 SGNSDSIER 9 0 A0A5F9ZI51;A0A5F9ZGW5;C9J8U3;A0A0A0MRW7;Q7Z2E3-13;Q7Z2E3-4;Q7Z2E3-5;Q7Z2E3-9;Q7Z2E3-10;Q7Z2E3-11;Q7Z2E3-8;Q7Z2E3-7;Q7Z2E3 A0A5F9ZI51 APTX Aprataxin 1 0 S(0.189)GNS(0.809)DS(0.003)IER 92.781 0.024752 66898000 2257.1 1314.2 2377.1 2380.6 1954.3 1996.7 2235.5 999.48 2447.6 3341.2 TRUE FALSE FALSE 1992.52616 1354.688944 2505.613216 2477.691158 1810.135183 1958.616274 2321.723984 1113.256763 2346.708892 3321.326394 0.599918805 0.407875886 0.75440138 0.745994481 0.545003703 0.589709063 0.699035177 0.335184391 0.706557746 1 11.69754379 -9.116247931 0.679836166 1.030648581 0.589037907 0.238601228 0.156522059 0.469298346 0.35661538 0.118693463 0.027382264 7.65E-10 9.116247931 -0.441610674 EISLWFKPEELVDYK ddPTM_HeLa_CUDC101_4h_R1 2 EISLWFKPEELVDYK 15 1 Q32Q12;P22392-2;P22392 Q32Q12 NME1-NME2;NME2 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B 0 0 ; ; 162.67 5.63E-05 161470000 1301.63 1121.07 1323.95 913.8 1132.58 1218.47 1105.46 928.66 1136.72 1037.86 FALSE FALSE TRUE 1149.054905 1155.608838 1395.526742 951.0687138 1049.03183 1195.229715 1148.097963 1034.374901 1089.86392 1031.686763 1.11376335 1.120115989 1.352665162 0.921858018 1.016812339 1.158519968 1.112835799 1.002605576 1.056390331 1 10.0107893 -9.163000692 1.001712026 1.00226765 1.102201461 0.056112377 0.109045974 0.939092572 1.748510288 0.063273021 0.019759698 6.87E-10 9.163000692 0.099933811 ILSEVT(ph)PDQSKPEN ddPTM_HeLa_CUDC101_4h_R1 1 ILSEVTPDQSKPEN 14 1 O43482 O43482 OIP5 Protein Mis18-beta 1 0 ILS(0.008)EVT(0.992)PDQSKPEN 147.39 1.92E-05 0 2058.9 1744.1 1803.1 1759.3 1982.3 1688.1 1462.6 2106.7 1761.4 1637.2 TRUE FALSE FALSE 1817.558863 1797.833654 1900.58104 1831.051858 1836.069678 1655.902305 1519.012972 2346.518212 1688.794346 1627.461862 1.11680581 1.104685582 1.167819096 1.125096631 1.12817985 1.017475336 0.933363176 1.441826852 1.037685974 1 10.66840802 -9.113531535 0.643756889 0.989188466 1.121276126 0.108029198 0.123538852 1.587522568 1.060950513 0.116908761 0.025837056 7.70E-10 9.113531535 0.132087661 HNPT(ph)GAVLFMGQINKP ddPTM_HeLa_CUDC101_4h_R1 1 HNPTGAVLFMGQINKP 16 1 P07093-2;P07093;P07093-3 P07093-2 SERPINE2 Glia-derived nexin 1 0 HNPT(1)GAVLFMGQINKP 61.212 0.0030701 0 3833.9 3597.8 3118.4 3559.3 3261.3 3060.8 3225.3 3007.3 3160.3 2693 TRUE FALSE FALSE 3384.496054 3708.643954 3286.990137 3704.463639 3020.720396 3002.42034 3349.700901 3349.638876 3030.031096 2676.981916 1.264295449 1.38538252 1.227871625 1.383820943 1.128405231 1.121569153 1.251297546 1.251274376 1.131883289 1 11.38639168 -9.113354739 0.904368589 1.001683982 1.249999763 0.368606805 0.091334153 0.348696066 0.520785569 0.055454504 0.016730103 7.70E-10 9.113354739 0.248315781 SGDWK(ac)GYTGK ddPTM_HeLa_CUDC101_4h_R1 1 SGDWKGYTGK 10 1 K7EQ48;A0A2U3TZU2;P06744;A0A0J9YXP8;A0A0J9YYH3;A0A2R8Y6C7;K7EP41;K7ENA0;A0A0J9YXM3 K7EQ48 GPI Glucose-6-phosphate isomerase 0 1 SGDWK(1)GYTGK 91.937 0.024494 0 653.52 1597.1 1391.7 1655.8 2229.2 3358.6 3612.8 3556.3 336.99 453.94 FALSE TRUE FALSE 576.9153763 1646.304758 1466.939512 1723.330681 2064.756357 3294.540301 3752.146906 3961.134817 323.0991296 451.2399447 1.278511318 3.648402091 3.250907924 3.819100461 4.575739319 7.301083026 8.315192284 8.778333708 0.716025107 1 8.817750974 -5.156648056 0.43240436 0.906351437 11.75077607 0.959471778 0.568947042 0.336143774 0.070000635 0.16306325 1.650118448 6.97E-06 5.156648056 10.84442463 up KPPAPPS(ph)PVQSQS(ph)PSTNWSPAVPVK ddPTM_HeLa_CUDC101_4h_R1 2 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(0.976)PVQS(0.325)QS(0.564)PS(0.07)T(0.065)NWS(0.001)PAVPVK;KPPAPPS(0.673)PVQS(0.374)QS(0.441)PS(0.254)T(0.238)NWS(0.019)PAVPVK ; 65.33 0.0012744 381850000 9330 7884.8 7223.9 7181.4 8333.4 8155.1 7331.7 6262.7 9069.9 12015.4 TRUE FALSE FALSE 8236.351543 8127.721342 7614.445885 7474.288533 7718.661684 7999.555055 7614.486125 6975.620453 8696.034883 11943.93187 0.689584605 0.680489594 0.637515851 0.625781243 0.646241269 0.669758932 0.63751922 0.584030496 0.728071374 1 13.54399022 -9.113329343 0.441805893 1.083197234 0.624249148 0.375275371 0.086881256 0.18581067 0.052553455 0.03857274 0.006931732 7.70E-10 9.113329343 -0.458948086 S(ph)RPALSPLGDIDFCPPNPGPDGPR ddPTM_HeLa_CUDC101_4h_R1 2 SRPALSPLGDIDFCPPNPGPDGPR 24 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 S(0.784)RPALS(0.216)PLGDIDFCPPNPGPDGPR;S(0.598)RPALS(0.402)PLGDIDFCPPNPGPDGPR ; 94.269 1.14E-05 42790000 3409.8 2973.9 3130.1 2849.3 3340.6 3234.8 3098.6 2913 3846.2 1576.39 TRUE FALSE FALSE 3010.108413 3065.522334 3299.322674 2965.50677 3094.170593 3173.10158 3218.11404 3244.604145 3687.658008 1567.013562 1.92092046 1.956283218 2.105484441 1.892457629 1.974565293 2.02493562 2.053660618 2.070565452 2.353303186 1 10.61380195 -9.113156592 0.51982699 0.831896303 2.03811043 0 0.425563652 0.142181008 0.057693175 0.08531575 0.016277081 7.71E-10 9.113156592 1.206214126 S(ph)HSDTSIASR ddPTM_HeLa_CUDC101_4h_R1 1 SHSDTSIASR 10 0 H7C3H3;E9PEM3;H7C357;H0Y6E6;Q92622-3;Q92622-2;Q92622 H7C3H3 KIAA0226 Run domain Beclin-1 interacting and cysteine-rich containing protein 1 0 S(0.918)HS(0.081)DT(0.001)SIASR 101.72 0.0092278 3365400 175.43 146.65 0 204.55 220.24 254.11 261.12 0 233.6 256.22 TRUE FALSE FALSE 154.8663613 151.1681127 0 212.8924331 203.993334 249.2632751 271.1914859 0 223.9709091 254.695992 0.608043967 0.59352372 0 0.8358688 0.800928716 0.978669798 1.064765424 0 0.87936566 1 7.992632447 -9.110071104 0.94584401 0.993182449 0.633017459 0.121230739 0.345148656 0.878901482 1.456569239 0.205245354 0.064794324 7.76E-10 9.110071104 -0.36016499 TGS(ph)CSELDACPSK ddPTM_HeLa_CUDC101_4h_R1 1 TGSCSELDACPSK 13 0 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;Q9H1H9;A0A1B0GUA8;H0Y9Z7 Q9H1H9-3;Q9H1H9 KIF13A Kinesin-like protein KIF13A 1 0 T(0.043)GS(0.653)CS(0.304)ELDACPSK 215.09 3.79E-24 88838000 5840.8 5113.2 4800.7 5225 5118.8 5214.9 4979.7 5366 4962.8 413.34 TRUE FALSE FALSE 5156.150278 5270.731631 5060.240363 5438.098084 4741.196322 5115.434471 5171.768697 5976.84375 4758.231283 410.8814353 12.54899792 12.82786512 12.31557313 13.23520027 11.53908625 12.44990411 12.58700991 14.54639523 11.58054581 1 8.682578337 -9.109899567 0.639694741 2.73E-19 12.9160804 0.149671271 3.30103549 0.116219695 0.076655513 0.833652105 0.184118844 7.76E-10 9.109899567 12.9160804 AGAAAGDS(ph)DEESRADDKGVMDYYLK ddPTM_HeLa_CUDC101_4h_R1 2 AGAAAGDSDEESRADDKGVMDYYLK 25 2 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 AGAAAGDS(0.731)DEES(0.127)RADDKGVMDY(0.115)Y(0.027)LK;AGAAAGDS(0.921)DEES(0.079)RADDKGVMDYYLK ; 78.978 5.51E-05 139848000 4578.2 3963.9 3942.3 3999.9 3923 3922.4 3817.3 4073.8 4642.1 3519.84 TRUE FALSE FALSE 4041.550336 4086.023061 4155.432663 4163.033211 3633.608106 3847.586755 3964.53454 4537.544925 4450.750673 3498.903835 1.15509043 1.167800904 1.187638432 1.189810697 1.038498992 1.099654902 1.133079023 1.296847567 1.27204144 1 11.7726873 -9.10910211 0.736958166 0.992704759 1.154862332 0 0.105229863 0.557593585 0.515289507 0.05359103 0.013412765 7.78E-10 9.10910211 0.162157573 EITALAPSTMK ddPTM_HeLa_CUDC101_4h_R1 2 EITALAPSTMK 11 0 P60709;P63267-2;A0A2R8YFE2;P63267;P68133;P68032;P62736;A6NL76;P63261 P60709;P63267;P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ; ; 137.98 0.0049253 2153100 2643.99 2026.68 1704.66 1961.06 2524.37 2318.21 1982.79 1982.62 1897.7 1582.02 FALSE FALSE TRUE 2334.0655 2089.119609 1796.819076 2041.040503 2338.152254 2273.994007 2059.266874 2208.313447 1819.476003 1572.610075 1.484198491 1.328440942 1.142571261 1.297868134 1.486797199 1.445999897 1.30945802 1.404234579 1.156978473 1 10.61894529 -9.421090596 1.057035163 0.99215641 1.367994164 0.508303337 0.10791022 0.287606618 0.555284437 0.08320807 0.019282645 3.79E-10 9.421090596 0.375837754 EITALAPSTMK(ac)IK ddPTM_HeLa_CUDC101_4h_R1 5 EITALAPSTMKIK 13 1 P60709;P63267-2;A0A2R8YFE2;P63267;P68133;P68032;P62736;A6NL76;P63261 P60709;P63267;P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 1 ;;;; EITALAPSTMK(1)IK;EITALAPSTMK(1)IK;EITALAPSTMK(1)IK;EITALAPSTMK(1)IK;EITALAPSTMK(1)IK 245.13 6.65E-41 14431860 14322.09 11835.61 9597.58 11694.22 12880.01 12310.65 12032.21 11505.17 10238.2 9648.81 FALSE TRUE FALSE 12643.27632 12200.25112 10116.45421 12171.16084 11929.87732 12075.84486 12496.29637 12814.87205 9816.177063 9591.418449 1.318186292 1.271996544 1.054740158 1.268963595 1.243807408 1.259025964 1.302862182 1.336076839 1.023433303 1 13.22752847 -9.373754289 0.941041316 0.989523987 1.257260536 0.63835902 0.073666425 0.333475818 0.494668723 0.064247228 0.014215405 4.23E-10 9.373754289 0.267736549 GPTTGEGALDLSDVHS(ph)PPKS(ph)PEGK ddPTM_HeLa_CUDC101_4h_R1 2 GPTTGEGALDLSDVHSPPKSPEGK 24 1 O95684;O95684-2 O95684 FGFR1OP FGFR1 oncogene partner 2 0 GPTTGEGALDLSDVHS(1)PPKS(1)PEGK;GPTTGEGALDLSDVHS(1)PPKS(1)PEGK ; 105.95 1.30E-06 92501000 11094.5 9578.5 8287.1 9107 10364 10847.4 9814.6 9795.4 10580.7 13428.7 TRUE FALSE FALSE 9794.019528 9873.602232 8735.125693 9478.422824 9599.468368 10640.50392 10193.15241 10910.46874 10144.55907 13348.8255 0.733698971 0.739660747 0.654374102 0.710056688 0.719124568 0.79711162 0.763599196 0.817335484 0.759958925 1 13.70442519 -9.108652256 0.777728128 1.008089118 0.738814231 0.078354478 0.084680401 0.228642105 0.240171146 0.037304103 0.009821227 7.79E-10 9.108652256 -0.269274886 EIVHLQAGQCGNQIGAK ddPTM_HeLa_CUDC101_4h_R1 2 EIVHLQAGQCGNQIGAK 17 0 P68371;M0R0X0;M0QY85;M0QY37;M0QX14;M0QZL7;M0R278;M0R2D3;M0R2T4;P04350;M0QYM7;M0R042 P68371;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain 0 0 ; ; 291.2 3.34E-92 19045700 5407.1 4511.2 4081.2 4229.5 4135.1 4343.3 3632.6 3946.3 3760.7 3334.8 FALSE FALSE TRUE 4773.287935 4650.184725 4301.842017 4401.997291 3830.061911 4260.458789 3772.710599 4395.530841 3605.682354 3314.964461 1.439921299 1.402785695 1.297703812 1.327916888 1.155385512 1.285220049 1.13808478 1.325966203 1.087698645 1 11.69477769 -9.486643836 1.246933235 1.001037215 1.306776236 0.538066134 0.092427289 0.270910057 0.757741297 0.069819385 0.017289509 3.26E-10 9.486643836 0.30573902 EIVLADVIDNDSWR ddPTM_HeLa_CUDC101_4h_R1 2 EIVLADVIDNDSWR 14 0 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 0 ; ; 304.38 7.97E-123 37593000 2600.04 2542.31 3047.84 2427.06 2927.23 3037.55 2723.12 2408.79 2576.58 2795.12 FALSE FALSE TRUE 2295.267253 2620.635558 3212.61545 2526.045997 2711.294075 2979.613795 2828.151651 2682.996917 2470.372282 2778.494502 0.826083064 0.943185439 1.156243227 0.909141982 0.975814087 1.072384269 1.017871962 0.965629738 0.889104614 1 11.44008767 -6.982985482 24.99733204 0.916123159 1.015245702 0.319431605 0.073687961 274.0380636 402609.0533 0.013924005 0.018297328 1.04E-07 6.982985482 0.099122542 EIYDDLQALHTDDPLTWDYVAR ddPTM_HeLa_CUDC101_4h_R1 1 EIYDDLQALHTDDPLTWDYVAR 22 0 Q9NYH9 Q9NYH9 UTP6 U3 small nucleolar RNA-associated protein 6 homolog 0 0 112.58 1.13E-05 3247100 1206.8 827.94 725.93 799.88 1020.1 1042.6 899.19 683.97 724.02 1012.6 FALSE FALSE TRUE 1065.340733 853.44785 765.1759716 832.5025638 944.8492553 1022.714142 933.8720595 761.8303801 694.1755892 1006.57701 1.058379759 0.847871391 0.760176284 0.827062962 0.938675577 1.016031691 0.927770106 0.756852553 0.689639821 1 9.975241837 -7.260118613 24.97123805 1.027568221 0.872809164 0 0.131386246 82.63529037 1562358.926 0.013951306 0.016605596 5.49E-08 7.260118613 -0.154759057 LQPLS(ph)PVPSDIEISR ddPTM_HeLa_CUDC101_4h_R1 1 LQPLSPVPSDIEISR 15 0 H0Y327;A0A087WVM4;B7ZM99;Q6UB35 H0Y327 MTHFD1L "Monofunctional C1-tetrahydrofolate synthase, mitochondrial" 1 0 LQPLS(0.969)PVPS(0.031)DIEISR 103.6 0.0042954 11233000 1353.5 1223.2 790.8 1112.3 1156.4 1400.2 1275.1 890.4 1136.5 3062.5 TRUE FALSE FALSE 1194.844782 1260.885342 833.55304 1157.664402 1071.094676 1373.493518 1324.281034 991.7595369 1089.652989 3044.284114 0.392487934 0.414181231 0.273809214 0.380274757 0.351837948 0.451171266 0.43500573 0.325777588 0.357934065 1 11.57188729 -9.10855899 0.64562975 1.054599041 0.36949219 0 0.203493982 0.146454847 0.09880604 0.0559609 0.012474748 7.79E-10 9.10855899 -0.685106851 EK(ac)EELMER ddPTM_HeLa_CUDC101_4h_R1 2 EKEELMER 8 1 A0A2R8Y7M3;A0A2R8Y5S7;P35241-4;P35241;P35241-5;P26038 A0A2R8Y7M3;P26038 RDX;MSN Radixin;Moesin 0 1 ; EK(1)EELMER;EK(1)EELMER 125.71 0.0023714 10199300 3923.2 2186.98 1851.35 1719.11 3787.4 3595.3 4184.5 3122.4 3159.8 2713.18 FALSE TRUE FALSE 3463.328443 2254.358262 1951.439581 1789.222736 3508.011048 3526.725643 4345.897567 3477.841395 3029.551707 2697.041885 1.284121119 0.835863275 0.723548118 0.66340191 1.300688383 1.307627317 1.611357091 1.289502182 1.123286859 1 11.39716221 -5.538730809 24.76948497 1.046122411 1.403761149 0.485262607 0.206120347 191.2700631 298866.4568 0.035818494 0.071655099 2.89E-06 5.538730809 0.357638738 EK(ac)EELMLR ddPTM_HeLa_CUDC101_4h_R1 1 EKEELMLR 8 1 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 1 EK(1)EELMLR 92.062 0.025551 2330700 1648.6 904.94 639.64 646.24 1286.6 1395.9 1339 1321.5 953.61 935.31 FALSE TRUE FALSE 1455.353607 932.8201288 674.2208732 672.5964605 1191.690081 1369.275533 1390.645679 1471.934218 914.3017922 929.7467345 1.565322634 1.003305625 0.725166164 0.723419008 1.281736237 1.472740352 1.495725262 1.583156104 0.983388011 1 9.860693966 -5.313923075 3.798468058 1.167254084 1.520442793 0.365524936 0.25492247 0.300978826 8.939651937 0.04718015 0.115097186 4.85E-06 5.313923075 0.353188709 EK(ac)EMNGETR ddPTM_HeLa_CUDC101_4h_R1 2 EKEMNGETR 9 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 1 ; EK(1)EMNGETR;EK(1)EMNGETR 119.53 0.001488 3260400 867.32 776.42 809.02 784.68 850.63 917.86 517.02 548.07 877.24 688.62 FALSE TRUE FALSE 765.6540644 800.3405799 852.7580684 816.6826421 787.8807196 900.3533498 536.9616346 610.4600734 841.0797959 684.5240576 1.118520315 1.169192771 1.245767857 1.193066384 1.150990547 1.31529833 0.784430625 0.891802219 1.22870743 1 9.418957436 -4.739340158 24.99997616 1.109202354 0.838116224 0.581988744 0.102743313 157.097175 177715.0215 0.015906423 0.05941919 1.82E-05 4.739340158 -0.27108613 EK(ac)EPIAASTNR ddPTM_HeLa_CUDC101_4h_R1 2 EKEPIAASTNR 11 1 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 1 ; EK(1)EPIAASTNR;EK(1)EPIAASTNR 119.03 0.002228 2351000 1497.04 841.75 704.24 643.25 1394.41 1402.13 1796.65 1436.56 1076.04 987.05 FALSE TRUE FALSE 1321.559241 867.6833198 742.3133446 669.4845154 1291.547152 1375.386706 1865.947392 1600.092184 1031.685176 981.1789827 1.346909447 0.884327258 0.756552431 0.682326596 1.316321665 1.401769433 1.901740075 1.63078522 1.051475005 1 9.938372521 -5.111182147 2.227853516 1.082191266 1.759739012 0.656703083 0.217665995 0.186703004 1.780480062 0.037588226 0.128094918 7.74E-06 5.111182147 0.677547746 EK(ac)GDYILIVK ddPTM_HeLa_CUDC101_4h_R1 2 EKGDYILIVK 10 1 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 0 1 ; EK(1)GDYILIVK;EK(1)GDYILIVK 113.63 0.0047947 658620 726.43 73.835 161.77 177 682.3 511.11 727 338.071 634.13 167.08 FALSE TRUE FALSE 641.2789766 76.10976883 170.5157755 184.2188251 631.9680883 501.3614283 755.0406335 376.5556361 607.990893 166.0862007 3.861121356 0.45825462 1.026670336 1.109175984 3.805060779 3.018682022 4.546076858 2.267230116 3.66069481 1 7.375788402 -9.650282267 1.483888979 0.999383508 2.686686244 0 1.524717429 0.607167684 2.402691478 1.004546906 0.226466355 2.24E-10 9.650282267 1.687302736 EK(ac)GPTPEEAIQK ddPTM_HeLa_CUDC101_4h_R1 1 EKGPTPEEAIQK 12 1 H0YI89;E9PQI5;E9PQ80;E9PSI1;Q9BY43;Q9BY43-2 H0YI89 CHMP4A Charged multivesicular body protein 4a 0 1 EK(1)GPTPEEAIQK 130.44 0.00025158 0 241.39 176.4 51.811 261.73 276.95 368.39 251.35 263.49 165.78 152.95 FALSE TRUE FALSE 213.0946301 181.8346749 54.61205938 272.4044807 256.5199503 361.3635745 261.0446537 293.4846365 158.9464782 152.0402466 1.401567249 1.195964088 0.359194757 1.791660345 1.687184519 2.376762618 1.716944425 1.93030887 1.045423707 1 7.24830946 -6.029295772 24.28578629 1.135663114 1.919134749 0.659077579 0.31749361 259.877196 215434.3905 0.049120379 0.081561817 9.35E-07 6.029295772 0.783471635 EK(ac)ITAFVVER ddPTM_HeLa_CUDC101_4h_R1 1 EKITAFVVER 10 1 P49748-2;P49748;P49748-3 P49748-2 ACADVL "Very long-chain specific acyl-CoA dehydrogenase, mitochondrial" 0 1 EK(1)ITAFVVER 94.465 0.015007 1889300 545.04 618.23 735.78 527.78 559.48 719.93 825.39 669.44 923.01 654.23 FALSE TRUE FALSE 481.1512374 637.2769335 775.5584924 549.3051497 518.208275 706.1985347 857.2255688 745.6463436 884.9631371 650.3386109 0.739847257 0.979915575 1.192545667 0.844644837 0.7968284 1.085893599 1.318121905 1.146550937 1.360772869 1 9.345047269 -5.026241887 4.756420773 0.900099323 1.229307706 0.098640804 0.192039427 0.123398127 7.15534616 0.020705216 0.058776192 9.41E-06 5.026241887 0.329208383 EK(ac)LEMEMEAAR ddPTM_HeLa_CUDC101_4h_R1 1 EKLEMEMEAAR 11 1 Q15233;Q15233-2;H7C367;C9JYS8 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 1 EK(1)LEMEMEAAR 98.407 0.013145 980330 393.13 141.51 163.97 235.6 301.73 211.34 385.37 170.2 300.74 187.65 FALSE TRUE FALSE 347.0478973 145.8697554 172.8347142 245.2087864 279.471979 207.3090416 400.23385 189.57488 288.3433699 186.5338495 1.860508955 0.782001528 0.926559521 1.314553831 1.498237343 1.111374918 2.145636576 1.016302835 1.545796491 1 7.543293643 -9.791374279 1.79044271 0.999040826 1.425910993 0 0.439671753 0.640787769 3.716987375 0.313697257 0.065805418 1.62E-10 9.791374279 0.426870167 EK(ac)LPGELEPVQATQNK ddPTM_HeLa_CUDC101_4h_R1 1 EKLPGELEPVQATQNK 16 1 O75821;K7EL20;K7ER90;K7EP16 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G 0 1 EK(1)LPGELEPVQATQNK 226.65 3.58E-32 438570 0 0 0 0 194.23 75.006 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 179.9020399 73.57538552 0 0 0 0 0 EK(ac)LQEEMLQR ddPTM_HeLa_CUDC101_4h_R1 2 EKLQEEMLQR 10 1 P08670;B0YJC4 P08670 VIM Vimentin 0 1 ; EK(1)LQEEMLQR;EK(1)LQEEMLQR 228.84 1.78E-19 15086600 4567.8 1854.85 1593.22 1452.07 4255.4 3743.3 4480.3 3218.8 3873.1 2694.5 FALSE TRUE FALSE 4032.369408 1911.99573 1679.354292 1511.291691 3941.48762 3671.902789 4653.106672 3585.215181 3713.449179 2678.472994 1.505473237 0.713837972 0.626981977 0.5642363 1.471542789 1.370894087 1.737223665 1.338529524 1.386405309 1 11.38719503 -5.571967229 24.99994822 1.103805565 1.493304644 0.336845732 0.319528051 137.5320646 70042.34092 0.054941049 0.109882122 2.68E-06 5.571967229 0.389499078 EK(ac)NPDMVAGEK ddPTM_HeLa_CUDC101_4h_R1 1 EKNPDMVAGEK 11 1 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 0 1 EK(1)NPDMVAGEK 107.03 0.006602 1325900 1211.8 483.27 586.29 459.94 1105.9 1064.7 1220.6 964.26 1172.6 901.72 FALSE TRUE FALSE 1069.754641 498.1589759 617.9866108 478.6983412 1024.31996 1044.392621 1267.678951 1074.027461 1124.264932 896.3565293 1.193447703 0.555759856 0.689442862 0.534049037 1.142759523 1.165153136 1.414257507 1.198214578 1.254260883 1 9.807928874 -5.279454688 2.925024134 0.978246157 1.290120093 0.276858387 0.250732865 0.345276613 5.91336101 0.040315033 0.107703409 5.25E-06 5.279454688 0.311873936 EK(ac)PAAVATAMAR ddPTM_HeLa_CUDC101_4h_R1 1 EKPAAVATAMAR 12 1 H3BP78;Q9NVI1-2;Q9NVI1-1;Q9NVI1 H3BP78 FANCI Fanconi anemia group I protein 0 1 EK(1)PAAVATAMAR 103.44 0.0095631 1122300 346.84 253.3 214.57 409.1 293.27 389.93 310.69 249.19 256.79 218.11 FALSE TRUE FALSE 306.183941 261.1038728 226.1703032 425.7848663 271.6360564 382.4927349 322.6734174 277.5567823 246.2050075 216.812672 1.412205007 1.204283266 1.043159983 1.963837548 1.252860609 1.764162267 1.488259032 1.280168635 1.135565579 1 7.76030527 -6.29793172 24.99996922 1.190143249 1.541841756 0.433321146 0.22194814 492.3166032 337272.5328 0.036217848 0.055324758 5.04E-07 6.29793172 0.351698508 EK(ac)PPITVVGDVGGR ddPTM_HeLa_CUDC101_4h_R1 2 EKPPITVVGDVGGR 14 1 I3L0S1;E7EPA1;O60256-4;O60256-3;O60256-2;O60256;I3L4G9;C9J168;B4DP31;Q14558;Q14558-2 I3L0S1;C9J168 PRPSAP2;PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 2;Phosphoribosyl pyrophosphate synthase-associated protein 1 0 1 ; EK(1)PPITVVGDVGGR;EK(1)PPITVVGDVGGR 130.1 0.0031641 2676600 364.68 0 0 0 318.23 188.059 343.93 141.895 352.73 107.02 FALSE TRUE FALSE 321.9327632 0 0 0 294.7548069 184.4720879 357.1954953 158.0477532 338.1903201 106.3834403 3.026154845 0 0 0 2.770683164 1.734030103 3.357623088 1.485642435 3.178975217 1 6.733129787 -9.920459752 2.146876755 0.991411935 1.832477536 0 1.394453181 0.939529676 7.849376287 1.067074327 0.203903121 1.20E-10 9.920459752 0.841065601 EK(ac)PTTALLDK ddPTM_HeLa_CUDC101_4h_R1 2 EKPTTALLDK 10 1 Q12906-7;Q12906-4;Q12906-6;Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7ER69;K7EKY0 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 1 ; EK(1)PTTALLDK;EK(1)PTTALLDK 158.56 0.00040301 5123400 3836.2 1680.07 1206.78 1029.23 3216.2 3017.9 3097.5 2778.4 3039.8 1481.68 FALSE TRUE FALSE 3386.526451 1731.830965 1272.022177 1071.206448 2978.947334 2960.338586 3216.971613 3094.681825 2914.498157 1472.866901 2.299275276 1.175823127 0.863636881 0.727293449 2.022550259 2.009915888 2.184156362 2.101127958 1.978792622 1 10.52441135 -9.674624246 1.540894076 1.000836126 1.743377953 0 0.616418757 0.586520956 2.512036564 0.438979315 0.098515568 2.12E-10 9.674624246 0.742541827 EK(ac)PVCGTTYK ddPTM_HeLa_CUDC101_4h_R1 1 EKPVCGTTYK 10 1 Q14444-2;Q14444;G3V153 Q14444-2 CAPRIN1 Caprin-1 0 1 EK(1)PVCGTTYK 155.97 1.65E-13 0 1085 423.95 283.94 500.52 715.14 986.24 1017.4 652.3 620.74 338.75 FALSE TRUE FALSE 957.8179448 437.011397 299.2906553 520.933369 662.385547 967.4291152 1056.641459 726.5551953 595.1528345 336.7350999 2.844425618 1.297789856 0.88880148 1.547012382 1.96708198 2.872967847 3.137901154 2.15764616 1.767421438 1 8.3954703 -9.5873635 1.364484301 0.997621037 2.167788707 0.092268898 0.722841187 0.520674105 1.73293134 0.559592349 0.129011507 2.59E-10 9.5873635 1.17016767 EK(ac)QPPIDNIIR ddPTM_HeLa_CUDC101_4h_R1 2 EKQPPIDNIIR 11 1 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 0 1 ; EK(1)QPPIDNIIR;EK(1)QPPIDNIIR 152.64 0.00012603 4245600 2213.6 1057.65 1041.69 911.05 1999.26 2151.88 1960.92 1661.59 1946.63 1362.63 FALSE TRUE FALSE 1954.125164 1090.234943 1098.006912 948.2065569 1851.778573 2110.836474 2036.553341 1850.738689 1866.389087 1354.525016 1.442664506 0.804883579 0.810621361 0.700028826 1.36710548 1.558359166 1.503518441 1.366337769 1.377891929 1 10.40357132 -5.537761408 24.81146201 1.111944014 1.476135866 0.411810214 0.238108688 217.9955628 363428.0395 0.041067007 0.082159271 2.90E-06 5.537761408 0.364191853 EK(ac)TPATTPEAR ddPTM_HeLa_CUDC101_4h_R1 1 EKTPATTPEAR 11 1 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 0 1 EK(1)TPATTPEAR 82.171 0.037278 210170 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 EK(ac)VDLVLLGK ddPTM_HeLa_CUDC101_4h_R1 1 EKVDLVLLGK 10 1 P38117;P38117-2 P38117 ETFB Electron transfer flavoprotein subunit beta 0 1 EK(1)VDLVLLGK 92.866 0.023526 0 0 160.6 0 71.849 79.604 129.99 0 0 0 0 FALSE TRUE FALSE 0 165.5478956 0 74.77931278 73.73177151 127.5106573 0 0 0 0 0 EK(ac)VMYEK ddPTM_HeLa_CUDC101_4h_R1 1 EKVMYEK 7 1 E5RJD8;E5RHG6;O75347;A0A494C144;E5RIX8;O75347-2 E5RJD8 TBCA Tubulin-specific chaperone A 0 1 EK(1)VMYEK 130.96 0.0021724 12616000 3908.6 3693.2 4034.9 3443.3 5252.8 3388.1 3275.9 3558.9 5285.3 4371.5 FALSE TRUE FALSE 3450.439833 3806.983114 4253.038899 3583.732657 4865.311409 3323.477637 3402.25256 3964.03079 5067.437697 4345.498124 0.794026308 0.876075195 0.978722986 0.824700082 1.119621105 0.76480936 0.782937298 0.912215511 1.166135056 1 12.08530585 -9.594498018 1.402412665 0.999681157 0.871185006 0.266602016 0.114913602 0.586511709 2.077656436 0.070124165 0.016430922 2.54E-10 9.594498018 -0.128496151 EK(ac)VWVSDK ddPTM_HeLa_CUDC101_4h_R1 1 EKVWVSDK 8 1 Q5T6H2;Q5T6H7;Q9NQW7-2;Q9NQW7;Q9NQW7-4;Q9NQW7-3 Q5T6H2 XPNPEP1 Xaa-Pro aminopeptidase 1 0 1 EK(1)VWVSDK 84.17 0.039527 900730 674.13 313.29 201.78 490.64 441.16 475.05 374.57 245.45 446.22 208.84 FALSE TRUE FALSE 595.1095033 322.9420936 212.6888372 510.6504199 408.6165057 465.9892127 389.0172904 273.3910359 427.8266227 207.5978104 2.86664634 1.555614161 1.024523509 2.459806387 1.96830836 2.244673062 1.873898813 1.316926394 2.060843618 1 7.697647417 EK(ac)YIDQEELNK ddPTM_HeLa_CUDC101_4h_R1 2 EKYIDQEELNK 11 1 P07900;P07900-2;Q14568;P08238;Q58FF8 P07900;P08238;Q58FF8 HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 0 1 ; EK(1)YIDQEELNK;EK(1)YIDQEELNK 239.02 3.25E-28 6649600 3072.5 2334.03 2446 2408.72 3475.4 3226.5 3311.4 2953.1 3730.3 3274.7 FALSE TRUE FALSE 2712.346208 2405.938698 2578.238159 2506.958013 3219.026666 3164.959888 3439.121807 3289.268967 3576.535455 3255.221939 0.833229272 0.739101279 0.792031452 0.770134283 0.988880859 0.972271614 1.056493803 1.010459203 1.0987071 1 11.66854019 -5.551198774 23.69905493 0.883841468 1.011276724 0.285737307 0.103969426 125.5029101 105024.1384 0.015309543 0.030619717 2.81E-06 5.551198774 0.127435256 NSK(ac)LLSTSAK ddPTM_HeLa_CUDC101_4h_R1 2 NSKLLSTSAK 10 1 C9J2P0;P51965-3;P51965 C9J2P0 UBE2E1 Ubiquitin-conjugating enzyme E2 E1 0 1 ; NSK(1)LLSTSAK;NSK(1)LLSTSAK 172.61 0.00078066 6692900 3122.9 3587.7 3618.5 4858.8 6289 6475 6011.8 7348.6 1413.39 1196.49 FALSE TRUE FALSE 2756.838396 3698.232785 3814.127055 5056.962866 5825.072999 6351.500163 6243.67714 8185.13492 1355.129466 1189.373224 2.31789176 3.109396369 3.206837835 4.251788053 4.897598904 5.340207795 5.249552464 6.881889346 1.139364363 1 10.21598579 -5.110311152 0.239118172 0.64664629 9.615784578 0.976144047 0.281801074 0.681825721 0.046508277 0.25859486 1.807585833 7.76E-06 5.110311152 8.969138288 up EKAEGDVAALNR ddPTM_HeLa_CUDC101_4h_R1 1 EKAEGDVAALNR 12 1 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90 P67936 TPM4 Tropomyosin alpha-4 chain 0 0 84.188 0.036185 19004000 1574.4 1335.7 1244.1 1094.4 1546.8 1570.1 1462 1428.6 1514.6 1492 FALSE FALSE TRUE 1389.851219 1376.851334 1311.359809 1139.034362 1432.695646 1540.152958 1518.38983 1591.226049 1452.167547 1483.125518 0.937109639 0.928344444 0.884186668 0.767995931 0.96599757 1.038450853 1.023777025 1.072886974 0.979126534 1 10.53442498 -5.299394305 4.741046268 0.943615962 1.043643904 0.413014772 0.063690089 0.205928008 11.33134539 0.010573781 0.025064277 5.02E-06 5.299394305 0.100027943 SDS(ph)FENPVLQQHFR ddPTM_HeLa_CUDC101_4h_R1 4 SDSFENPVLQQHFR 14 0 P12956;P12956-2;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 1 0 S(0.164)DS(0.836)FENPVLQQHFR;S(0.104)DS(0.896)FENPVLQQHFR;S(0.183)DS(0.817)FENPVLQQHFR;S(0.133)DS(0.867)FENPVLQQHFR ;;; 156.67 4.44E-05 148431400 9884 9076 6804.4 7425.4 11309.5 9136.3 8207.2 6620.7 11554.9 12446.1 TRUE FALSE FALSE 8725.412503 9355.620802 7172.266446 7728.239907 10475.22072 8962.0403 8523.754453 7374.373726 11078.60213 12372.07004 0.705250817 0.7561888 0.579714342 0.62465213 0.846682946 0.724376783 0.688951358 0.596050111 0.895452587 1 13.59479929 -9.108482491 0.593932949 1.035697334 0.685488647 0.613408647 0.080386888 0.464321784 0.257214789 0.086936711 0.018154967 7.79E-10 9.108482491 -0.350208687 QAST(ph)DAGTAGALT(ph)PQHVR ddPTM_HeLa_CUDC101_4h_R1 1 QASTDAGTAGALTPQHVR 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 2 0 QAS(0.166)T(0.832)DAGT(0.002)AGALT(1)PQHVR 90.744 0.0032076 9143800 1657.5 1330.2 1421.9 1364.8 1736.9 1535.1 1393.2 1220.2 1669.1 1922.4 TRUE FALSE FALSE 1463.210363 1371.181885 1498.772215 1420.462443 1608.772347 1505.820525 1446.936191 1359.102636 1600.298992 1910.965479 0.765691677 0.717533571 0.784301041 0.743321875 0.841863636 0.787989391 0.757175473 0.711212552 0.837429566 1 10.900086 -9.10847951 0.716879349 1.013075633 0.763775136 0.424220881 0.060782554 0.226485813 0.196035288 0.033062216 0.008074871 7.79E-10 9.10847951 -0.249300496 SEALS(ph)SVLDQEEAMEIK ddPTM_HeLa_CUDC101_4h_R1 2 SEALSSVLDQEEAMEIK 17 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SEALS(0.969)S(0.031)VLDQEEAMEIK;SEALS(0.821)S(0.179)VLDQEEAMEIK ; 248.1 6.13E-56 12740600 3740.1 3284.4 2999.1 3010.8 3469.7 3467.3 3641.1 2499.6 4320.9 4025.3 TRUE FALSE FALSE 3301.691148 3385.588471 3161.240418 3133.593438 3213.747144 3401.167029 3781.538447 2784.14436 4142.790673 4001.357337 0.825142788 0.846110004 0.790042016 0.783132616 0.803164245 0.850003322 0.945063919 0.695799981 1.03534634 1 11.96627376 -9.107592836 0.63516771 1.016580125 0.817868602 0.631057162 0.060745569 0.530601361 0.344538488 0.058321719 0.012843449 7.81E-10 9.107592836 -0.198711522 ISDYFEFAGGSAPGT(ph)SPGR ddPTM_HeLa_CUDC101_4h_R1 1 ISDYFEFAGGSAPGTSPGR 19 0 Q86UE8-2;Q86UE8 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 0 ISDYFEFAGGS(0.002)APGT(0.499)S(0.499)PGR 89.44 0.017891 11314000 1826.3 1506.9 1546 1566.3 1698 1801.3 1605.1 1314.2 1884.2 1767.8 TRUE FALSE FALSE 1612.223882 1553.325803 1629.581436 1630.180484 1572.741923 1766.943204 1667.009245 1463.803216 1806.532478 1757.285047 0.917451546 0.883935026 0.927329029 0.927669923 0.894983956 1.005496067 0.948627684 0.832991334 1.028024726 1 10.77913251 -9.106834713 0.846105278 1.000713783 0.920352917 0.427173719 0.043505519 0.572460098 0.733897686 0.028746839 0.008211977 7.82E-10 9.106834713 -0.080360866 IKGS(ph)SPGIQDTLEAEDGAFETDEAPEDR ddPTM_HeLa_CUDC101_4h_R1 4 IKGSSPGIQDTLEAEDGAFETDEAPEDR 28 1 Q9UNX4 Q9UNX4 WDR3 WD repeat-containing protein 3 1 0 IKGS(0.49)S(0.49)PGIQDT(0.02)LEAEDGAFETDEAPEDR;IKGS(0.5)S(0.5)PGIQDTLEAEDGAFETDEAPEDR;IKGS(0.497)S(0.497)PGIQDT(0.006)LEAEDGAFETDEAPEDR;IKGS(0.499)S(0.499)PGIQDT(0.001)LEAEDGAFETDEAPEDR ;;; 141.29 3.00E-16 203484000 5444.51 4941.76 4337.93 4358.54 5231.92 5239.66 4616.91 4049.66 4754.39 4408.34 TRUE FALSE FALSE 4806.312791 5094.009768 4572.451617 4536.3001 4845.971685 5139.722215 4794.985765 4510.656925 4558.412032 4382.118998 1.096801067 1.162453546 1.043433923 1.035184143 1.10585123 1.172885131 1.094216238 1.029332368 1.040230088 1 12.09741295 -9.106606307 0.827826305 0.998556189 1.09419834 0.25291884 0.047683631 0.572209916 0.697024227 0.033931181 0.00949802 7.82E-10 9.106606307 0.095642151 EKDQAWK(ac)TLK ddPTM_HeLa_CUDC101_4h_R1 2 EKDQAWKTLK 10 2 O75528 O75528 TADA3 Transcriptional adapter 3 0 1 ; EKDQAWK(1)TLK;EKDQAWK(1)TLK 140.14 0.0012324 6297400 9401.1 7297.3 7126.2 7039.4 7224.2 7023.7 6686.8 6727.6 5899.2 5420.5 FALSE TRUE FALSE 8299.117309 7522.121164 7511.463928 7326.497159 6691.285159 6889.734625 6944.712116 7493.44279 5656.032479 5388.258625 1.540222526 1.396020809 1.394042946 1.359715201 1.241827021 1.278657003 1.288860205 1.390698426 1.049695806 1 12.39560338 -9.494927665 1.245536963 1.0003769 1.374593123 0.734709253 0.080425171 0.218110489 0.606484668 0.069083644 0.016868892 3.20E-10 9.494927665 0.374216223 SHGLEPAAPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SHGLEPAAPSPR 12 0 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 SHGLEPAAPS(1)PR;SHGLEPAAPS(1)PR ; 96.435 0.0093553 62553000 4355.5 3613.4 3740.2 3730.6 3497.1 3765 3988.7 4026.9 5162.7 5075.6 TRUE FALSE FALSE 3844.954893 3724.724571 3942.406525 3882.749993 3239.1259 3693.188898 4142.545495 4485.306019 4949.891321 5045.410105 0.762069844 0.738240201 0.781384752 0.769560831 0.641994572 0.731989832 0.821052285 0.888987401 0.981068182 1 12.30075583 -9.106104238 0.723114958 1.012276412 0.761302455 0.682571474 0.060657637 0.370353669 0.327597076 0.054598186 0.013480031 7.83E-10 9.106104238 -0.250973957 KQETAAVCGETDEEAGES(ph)GGEGIFR ddPTM_HeLa_CUDC101_4h_R1 1 KQETAAVCGETDEEAGESGGEGIFR 25 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 KQETAAVCGETDEEAGES(1)GGEGIFR 81.489 2.50E-05 4011300 820.05 821.1 708.42 622.66 659.5 656.73 762.04 646.98 1096.4 592.5 TRUE FALSE FALSE 723.9249821 846.3971178 746.7193281 648.0547662 610.8499989 644.2039694 791.4321381 720.629588 1051.205928 588.9757836 1.229125207 1.437066075 1.267826876 1.100307999 1.037139414 1.093769875 1.343743088 1.223530081 1.78480331 1 9.202064507 -9.105518622 0.995084486 1.006427931 1.213707324 0 0.268974647 0.515635431 0.959873707 0.070150774 0.023307294 7.84E-10 9.105518622 0.207279393 EKEDDEEEEDEDASGGDQDQEER ddPTM_HeLa_CUDC101_4h_R1 2 EKEDDEEEEDEDASGGDQDQEER 23 1 E5RI01;E5RFZ5;O60216 E5RI01 RAD21 Double-strand-break repair protein rad21 homolog 0 0 ; ; 235.21 3.59E-46 22166800 4803.3 3925.4 4038.8 4178.7 4201.8 4621 3993 3140 4833.1 5426.6 FALSE FALSE TRUE 4240.264455 4046.336921 4257.149745 4349.125448 3891.841585 4532.862124 4147.011348 3497.444908 4633.877572 5394.322342 0.786060637 0.750110332 0.789190833 0.806241298 0.721469971 0.840302421 0.768773367 0.648356677 0.859028675 1 12.39722602 -9.36309719 0.422825171 1.079083571 0.752679675 0.451747395 0.0653909 0.784688267 0.174428268 0.114518118 0.015175041 4.33E-10 9.36309719 -0.326403896 IACEEEFS(ph)DSEEEGEGGRK ddPTM_HeLa_CUDC101_4h_R1 2 IACEEEFSDSEEEGEGGRK 19 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 1 0 IACEEEFS(0.989)DS(0.011)EEEGEGGRK;IACEEEFS(0.999)DS(0.001)EEEGEGGRK ; 133.21 2.29E-05 122764000 4229 4100.5 3658.2 3763.4 4609.8 3210.7 3250.7 2225 3857.3 1242.72 TRUE FALSE FALSE 3733.283031 4226.831545 3855.973357 3916.887719 4269.744238 3149.461247 3376.080588 2478.285006 3698.300461 1235.328246 3.022098007 3.421626242 3.121416004 3.170726267 3.456364129 2.54949343 2.732942113 2.006175293 2.993779567 1 10.27067872 -9.103909194 0.825430399 0.971936914 2.961273904 0 0.73021419 0.253892865 0.307486586 0.312531762 0.087534234 7.87E-10 9.103909194 1.98933699 NSPNNIS(ph)GISNPPGT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 NSPNNISGISNPPGTPR 17 0 Q9NW25;Q9BWW4-2;Q9BWW4-3;Q9BWW4;A0A087WVT6 Q9NW25 SSBP3 Single-stranded DNA-binding protein 3 2 0 NSPNNIS(0.808)GIS(0.192)NPPGT(1)PR 197.05 6.99E-16 8394600 2500.6 1713.6 2594.9 2167.5 2335.4 2222.1 2258.4 1859 2661.9 2699.7 TRUE FALSE FALSE 2207.483459 1766.393985 2735.188143 2255.900019 2163.122195 2179.717145 2345.507245 2070.621046 2552.175355 2683.642064 0.822570002 0.658207743 1.019207509 0.840611365 0.806039756 0.812223498 0.87400152 0.771571244 0.951011832 1 11.38997655 -9.103688146 0.856825206 1.001034967 0.82835352 0.319778264 0.086003734 0.512568843 0.677482785 0.055487172 0.016101345 7.88E-10 9.103688146 -0.172681447 DMPGGFLFEGLS(ph)DDEDDFHPNTR ddPTM_HeLa_CUDC101_4h_R1 16 DMPGGFLFEGLSDDEDDFHPNTR 23 0 Q96S82;H3BUV9 Q96S82 UBL7 Ubiquitin-like protein 7 1 0 DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(0.992)DDEDDFHPNT(0.008)R;DMPGGFLFEGLS(0.994)DDEDDFHPNT(0.006)R;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(0.893)DDEDDFHPNT(0.107)R;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR ;;;;;;;;;;;;;;; 190.33 2.39E-14 518695000 32785.49 29037.21 28113.42 26729.86 32191.68 28464.02 27028.2 25540.33 32184.06 26486.24 TRUE FALSE FALSE 28942.42456 29931.81202 29633.31652 27820.01923 29816.9639 27921.11624 28070.68673 28447.73793 30857.41942 26328.69867 1.099272886 1.136851175 1.125513908 1.056642395 1.132489086 1.060482198 1.06616309 1.080484011 1.172007011 1 14.6843486 -9.1035322 0.897241282 1.000632069 1.094546101 0 0.059808648 0.311728091 0.458562316 0.018631431 0.005645906 7.88E-10 9.1035322 0.093914032 EGGSHFINT(ph)SSPR ddPTM_HeLa_CUDC101_4h_R1 1 EGGSHFINTSSPR 13 0 C9JP56;C9J5F9;O60907 C9JP56 TBL1X F-box-like/WD repeat-containing protein TBL1X 1 0 EGGSHFINT(0.372)S(0.257)S(0.372)PR 85.636 0.033171 7960500 2312.5 2011.8 2028 1996.4 2094.4 2261.6 1772.4 1702 2217.4 1825.9 TRUE FALSE FALSE 2041.432256 2073.781173 2137.639814 2077.821821 1939.900285 2218.463748 1840.762062 1895.7488 2125.997833 1815.039466 1.124731607 1.142554315 1.177737374 1.144780519 1.068792344 1.222267499 1.014171921 1.044466986 1.171323199 1 10.8257852 -9.103377312 0.876529603 1.00016648 1.119194697 0 0.078649311 0.515046946 0.717812352 0.038720844 0.011482687 7.88E-10 9.103377312 0.119028216 S(ph)SSPTSSLTQPIEMPTLSSS(ph)PTEERPTVGPGQQDNPLLK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPTSSLTQPIEMPTLSSSPTEERPTVGPGQQDNPLLK 39 1 Q7LBC6;Q7LBC6-2 Q7LBC6 KDM3B Lysine-specific demethylase 3B 2 0 S(0.258)S(0.258)S(0.258)PT(0.091)S(0.091)S(0.021)LT(0.024)QPIEMPT(0.135)LS(0.135)S(0.135)S(0.458)PT(0.135)EERPTVGPGQQDNPLLK 86.023 2.06E-11 12379000 1713.7 1428.4 1237.3 1464.8 1723 1565.4 1617.2 1457.6 1770 1999.6 TRUE FALSE FALSE 1512.822684 1472.407311 1304.192181 1524.540875 1595.897723 1535.542603 1679.575946 1623.527292 1697.039851 1987.70629 0.76108965 0.740756981 0.656129221 0.766984983 0.802884073 0.772519869 0.844981954 0.816784301 0.853767913 1 10.95688888 -9.103153837 0.840854426 1.002111365 0.769404367 0.424537674 0.064701664 0.259471283 0.328269545 0.037599656 0.0107262 7.89E-10 9.103153837 -0.232706999 TITS(ph)SLK ddPTM_HeLa_CUDC101_4h_R1 1 TITSSLK 7 0 O60890 O60890 OPHN1 Oligophrenin-1 1 0 TIT(0.002)S(0.499)S(0.499)LK 85.306 0.03878 28005000 1877.9 1891.7 1263 1726 1713.8 1661.3 1603.8 1468.3 1796.5 850.7 TRUE FALSE FALSE 1657.775409 1949.981035 1331.2816 1796.39374 1587.376388 1629.61347 1665.659103 1635.445337 1722.44751 845.6399986 1.960379608 2.305923369 1.574288826 2.124300818 1.87713021 1.927077093 1.969702363 1.933973487 2.036856715 1 9.723899807 -9.102547139 0.73732134 0.955632834 1.963951927 0 0.362946466 0.236529138 0.219481885 0.141125213 0.035627021 7.90E-10 9.102547139 1.008319094 S(ph)REDLTAVVSVSTK ddPTM_HeLa_CUDC101_4h_R1 2 SREDLTAVVSVSTK 14 1 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IS03;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 S(1)REDLTAVVSVSTK;S(0.996)REDLT(0.004)AVVSVSTK ; 143.99 0.00022757 48701000 11026.2 10035.4 8896.8 8758.1 10808.9 9721.8 9167.5 9093.3 10191.6 10300.7 TRUE FALSE FALSE 9733.725551 10344.57878 9377.787919 9115.293174 10011.54898 9536.372863 9521.093546 10128.44452 9771.497934 10239.43098 0.95061196 1.010268911 0.915850494 0.890214817 0.977744662 0.931338165 0.929845962 0.989160876 0.954300874 1 13.32184792 -9.102143209 0.425652678 1.01220332 0.943128428 0.037455275 0.036321736 2.020655852 0.531245924 0.061695166 0.011166298 7.90E-10 9.102143209 -0.069074892 DGSIS(ph)PVSSECSVVER ddPTM_HeLa_CUDC101_4h_R1 2 DGSISPVSSECSVVER 16 0 H0YCZ0;H7BY22;H0YEM9;Q8NCP5-3;Q8NCP5-4;Q8NCP5-2;Q8NCP5 H0YCZ0 ZBTB44 Zinc finger and BTB domain-containing protein 44 1 0 DGS(0.001)IS(0.996)PVS(0.003)SECSVVER;DGS(0.031)IS(0.966)PVS(0.002)SECSVVER ; 232.01 3.95E-43 34361000 2324.1 2043.33 2126.38 1965.2 2165.3 1994.12 1805.11 1982.24 2453.5 905.31 TRUE FALSE FALSE 2051.672521 2106.282575 2241.338535 2045.34935 2005.570133 1956.085483 1874.733697 2207.890189 2352.365692 899.9251759 2.279825675 2.340508558 2.490583212 2.272799345 2.22859654 2.173609024 2.083210635 2.453415293 2.613956976 1 9.813661244 -9.101378907 0.708342064 0.926537138 2.295764068 0 0.509881648 0.149072509 0.125817234 0.118666463 0.028925838 7.92E-10 9.101378907 1.36922693 EKFEEMIQQIK ddPTM_HeLa_CUDC101_4h_R1 1 EKFEEMIQQIK 11 1 E7ENZ3;B7ZAR1;E9PCA1;P48643-2;P48643 E7ENZ3 CCT5 T-complex protein 1 subunit epsilon 0 0 88.056 0.033861 21223000 6989.1 6283.9 6675.2 6801 7185.8 6439 5582.1 6022.2 6733.3 6002.5 FALSE FALSE TRUE 6169.848293 6477.499511 7036.081503 7078.374176 6655.71785 6316.186803 5797.403467 6707.742905 6455.750524 5966.796863 1.034030223 1.085590755 1.179205806 1.186293809 1.115459099 1.058555695 0.971610665 1.124178191 1.081945753 1 12.54274095 -7.325082461 2.743745421 1.014156825 1.103557195 0.165771121 0.061249478 0.260358405 3.724265507 0.011318491 0.0130885 4.73E-08 7.325082461 0.08940037 EVFSSCSSEVVLS(ph)GDDEEYQR ddPTM_HeLa_CUDC101_4h_R1 1 EVFSSCSSEVVLSGDDEEYQR 21 0 Q09666;E9PKR9;E9PLK4 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 EVFSSCSS(0.002)EVVLS(0.998)GDDEEYQR 118.52 6.58E-07 5198100 925.47 862.1 810.6 894.92 856.38 687.47 609.61 807.33 821.5 650.48 TRUE FALSE FALSE 816.9878095 888.6602792 854.4234879 931.4187058 793.2065535 674.3576552 633.1228619 899.2331839 787.6374223 646.610916 1.263492139 1.374335411 1.321387355 1.44046239 1.22671383 1.042911028 0.979140386 1.390686673 1.218101029 1 9.336754053 -9.100964983 0.946478623 1.004988719 1.24820459 0.059829861 0.15368551 0.568481277 0.945967553 0.089329105 0.028522093 7.93E-10 9.100964983 0.243215871 S(ph)PTAALNESLVECPK ddPTM_HeLa_CUDC101_4h_R1 2 SPTAALNESLVECPK 15 0 Q53EZ4 Q53EZ4 CEP55 Centrosomal protein of 55 kDa 1 0 S(1)PTAALNESLVECPK;S(0.992)PT(0.008)AALNESLVECPK ; 252.05 4.66E-56 81863000 3516.6 3337.3 3203.5 2976.6 3017.52 2768.87 2873.39 2700.13 3430.7 1176.49 TRUE FALSE FALSE 3104.389479 3440.118257 3376.6909 3097.998614 2794.923561 2716.058418 2984.217615 3007.501885 3289.285094 1169.492185 2.654476463 2.941548735 2.887313779 2.649011813 2.389860827 2.322425453 2.551720869 2.571630596 2.812575523 1 10.19166651 -9.100591835 0.7979262 0.96293653 2.622308727 0 0.582119967 0.168042321 0.188158216 0.170203368 0.046362021 7.93E-10 9.100591835 1.659372196 SLDS(ph)DES(ph)EDEEDDYQQK ddPTM_HeLa_CUDC101_4h_R1 2 SLDSDESEDEEDDYQQK 17 0 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 0 S(0.089)LDS(0.911)DES(0.963)EDEEDDY(0.037)QQK;S(0.03)LDS(0.97)DES(0.999)EDEEDDYQQK ; 82.8 0.034065 112746000 6051.8 5276.9 4857.3 5186.5 5677.7 4927.8 5436.8 4970.7 5937.5 6186.2 TRUE FALSE FALSE 5342.417178 5439.475034 5119.900331 5398.027888 5258.867383 4833.810425 5646.499197 5536.544396 5692.753737 6149.404207 0.868769884 0.884553178 0.832584777 0.877813152 0.855183235 0.786061586 0.918218905 0.900338343 0.925740697 1 12.58623092 -9.098937509 0.612836371 1.013915755 0.861234019 0.431771918 0.04126303 0.45164128 0.270705983 0.037400928 0.008092659 7.96E-10 9.098937509 -0.152681736 NWS(ph)LSQVNVSHAR ddPTM_HeLa_CUDC101_4h_R1 1 NWSLSQVNVSHAR 13 0 P55291 P55291 CDH15 Cadherin-15 1 0 NWS(0.645)LS(0.355)QVNVSHAR 83.877 0.025684 50197000 1806.7 1379.3 1480.9 1655.5 1707.1 1669 1685.3 1406.4 1815.4 1825.6 TRUE FALSE FALSE 1594.921365 1421.794598 1560.961933 1723.018446 1581.170634 1637.166606 1750.302586 1566.498891 1740.568444 1814.74125 0.878869847 0.783469598 0.860156749 0.949456814 0.871292607 0.902148781 0.964491541 0.863207849 0.959127613 1 10.82554814 -9.097966604 0.974943196 0.996939282 0.886130993 0.368708172 0.048845128 0.397249021 0.707522496 0.028639863 0.009425359 7.98E-10 9.097966604 -0.110808289 NQGGYGGSSS(ph)SSSYGSGR ddPTM_HeLa_CUDC101_4h_R1 1 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-3;P09651-2;P09651;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 NQGGYGGS(0.228)S(0.228)S(0.511)S(0.029)S(0.003)S(0.001)YGSGR 201.18 5.46E-17 20838000 793.69 651.37 734.53 442.4 803.08 683.92 800.24 734.12 953.66 868.73 TRUE FALSE FALSE 700.6548614 671.4379376 774.2409136 460.4429842 743.8383884 670.8753655 831.1055249 817.6892534 914.3497312 863.5627553 0.811353729 0.777520723 0.896565894 0.533189952 0.861359969 0.776869268 0.96241474 0.946878786 1.058810985 1 9.754157212 -9.097403497 0.829924561 1.00203601 0.817022592 0.32801062 0.116313171 0.698803054 0.859226679 0.079976248 0.022694407 7.99E-10 9.097403497 -0.185013418 RDVPRTT(ph)QS(ph)T(ph)S(ph)RPK ddPTM_HeLa_CUDC101_4h_R1 1 RDVPRTTQSTSRPK 14 3 A0A087WU80;P21580 A0A087WU80 TNFAIP3 Tumor necrosis factor alpha-induced protein 3;A20p50;A20p37 4 0 RDVPRT(0.607)T(0.66)QS(0.743)T(0.995)S(0.994)RPK 55.841 0.003089 0 668.55 513.02 644.51 603.2 595.88 565.59 531.93 605.78 499.4 533.51 TRUE FALSE FALSE 590.1835825 528.8255381 679.3541601 627.8011033 551.9231196 554.8023131 552.4467183 674.7395466 478.8145206 530.3366588 1.112847043 0.997150639 1.280986613 1.183778441 1.040703316 1.046132308 1.041690611 1.272285322 0.902850129 1 9.050764666 -9.097251087 0.548407746 0.983822649 1.121957403 0.303425147 0.097834046 1.64892803 0.763313673 0.116489811 0.023367889 7.99E-10 9.097251087 0.138134755 EKLEMEMEAAR ddPTM_HeLa_CUDC101_4h_R1 1 EKLEMEMEAAR 11 1 Q15233;Q15233-2;H7C367;C9JYS8 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 0 98.754 0.018686 15827000 5456.9 4704.6 4275.3 4893.6 4788.6 5063.1 4255 4231.5 4213.7 5417.8 FALSE FALSE TRUE 4817.250454 4849.54315 4506.43565 5093.18216 4435.354518 4966.529803 4419.116775 4713.196856 4040.009503 5385.574685 0.894472872 0.900469018 0.836760404 0.945708204 0.823561974 0.922191241 0.82054693 0.875152074 0.750153835 1 12.39488458 -9.641861843 0.299953703 1.07722467 0.859694774 0 0.087864544 2.232597783 0.22028822 0.171596883 0.01932523 2.28E-10 9.641861843 -0.217529896 RMFPT(ph)IRVS(ph)FS(ph)GVDPEAK ddPTM_HeLa_CUDC101_4h_R1 1 RMFPTIRVSFSGVDPEAK 18 2 Q9UMR3 Q9UMR3 TBX20 T-box transcription factor TBX20 3 0 RMFPT(1)IRVS(1)FS(1)GVDPEAK 54.811 0.022766 44496000 3291.5 2953.8 2982.5 2773.1 3602.8 3013.8 2774.6 2923.9 3482.5 410.55 TRUE FALSE FALSE 2905.67536 3044.803077 3143.742972 2886.199004 3337.028622 2956.316786 2881.617251 3256.744957 3338.949876 408.1080303 7.119868132 7.460777173 7.703212723 7.072144603 8.176826658 7.24395642 7.060917789 7.980105058 8.181534368 1 8.672807289 -9.096979441 0.58155001 0.21394711 7.634934388 0 2.247919215 0.115163813 0.061103999 0.451008376 0.094098639 8.00E-10 9.096979441 7.420987278 SSLGQSAS(ph)ETEEDTVSVSK ddPTM_HeLa_CUDC101_4h_R1 5 SSLGQSASETEEDTVSVSK 19 0 E9PPJ0;Q13435;E9PJ04;H0YCG1 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 SSLGQS(0.079)AS(0.92)ETEEDTVSVSK;SSLGQS(0.003)AS(0.979)ET(0.018)EEDTVSVSK;SSLGQS(0.001)AS(0.991)ET(0.008)EEDTVSVSK;SSLGQS(0.031)AS(0.924)ET(0.043)EEDT(0.002)VSVSK;SSLGQS(0.002)AS(0.528)ETEEDT(0.432)VS(0.037)VSK ;;;; 314.02 4.14E-145 161020000 13033.1 11087.86 10168.91 10126.2 10618.5 11444.4 10153.19 8269.13 11640.8 13411.7 TRUE FALSE FALSE 11505.37977 11429.46382 10718.67203 10539.19021 9835.19441 11226.11714 10544.80194 9210.454334 11160.9613 13331.92661 0.862994533 0.857300236 0.803985226 0.790522669 0.737717413 0.842047625 0.790943593 0.690856963 0.837160421 1 13.70259766 -9.09671611 0.163321638 1.185641464 0.683376549 0.370047435 0.062404923 2.8728963 0.151810289 0.362757165 0.116135005 8.00E-10 9.09671611 -0.502264915 KLGAGEGGEASVS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 6 KLGAGEGGEASVSPEK 16 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KLGAGEGGEAS(0.007)VS(0.993)PEK;KLGAGEGGEAS(0.073)VS(0.927)PEK;KLGAGEGGEAS(0.011)VS(0.989)PEK;KLGAGEGGEAS(0.016)VS(0.984)PEK;KLGAGEGGEAS(0.003)VS(0.997)PEK;KLGAGEGGEAS(0.046)VS(0.954)PEK ;;;;; 151.31 0.00024804 292370000 24636.4 21051.5 20645.5 21264.7 20252.7 22402.8 20455.3 20362.3 24538.1 25536.7 TRUE FALSE FALSE 21748.55854 21700.07176 21761.65818 22131.96638 18758.69867 21975.50392 21244.26777 22680.26192 23526.62913 25384.80657 0.856754944 0.854844873 0.857270987 0.871858776 0.738973473 0.865695149 0.836889094 0.893458134 0.926799622 1 14.63167765 -9.095344577 0.522908964 1.024697657 0.838950731 0.496278664 0.044622552 0.550528277 0.228725233 0.050929376 0.009961512 8.03E-10 9.095344577 -0.185746926 EADSSGLAFASNS(ph)LQR ddPTM_HeLa_CUDC101_4h_R1 2 EADSSGLAFASNSLQR 16 0 Q9NPB6-2 Q9NPB6-2 1 0 EADSSGLAFAS(0.31)NS(0.69)LQR;EADSSGLAFAS(0.001)NS(0.999)LQR ; 130.95 0.00047461 11706900 2205.3 1689.03 1822.14 2040.71 2167.55 2356.72 1609.53 1743.73 1859.62 2300.09 TRUE FALSE FALSE 1946.798077 1741.067012 1920.6504 2123.938975 2007.654155 2311.769493 1671.610111 1942.229175 1782.965676 2286.408962 0.85146538 0.761485386 0.840029247 0.928940977 0.878081825 1.011091861 0.731107225 0.849467093 0.779810483 1 11.15886776 -9.094372305 0.906498496 0.998521014 0.857876164 0 0.100060637 0.521219795 0.7873042 0.046635685 0.014423896 8.05E-10 9.094372305 -0.14064485 AETFAGYDCTNS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 2 AETFAGYDCTNSPTK 15 0 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 0 AETFAGYDCT(0.011)NS(0.98)PT(0.009)K;AETFAGYDCT(0.387)NS(0.6)PT(0.012)K ; 208.38 3.69E-33 13101000 3890.2 3185.3 3589.4 3497.7 3678.5 3828.1 3250.3 2432.9 3371.2 2135.08 TRUE FALSE FALSE 3434.196653 3283.435317 3783.453821 3640.351324 3407.144384 3755.085371 3375.66516 2709.851502 3232.237709 2122.380449 1.618087207 1.54705313 1.782646378 1.715220909 1.605341015 1.769280042 1.590508978 1.276798183 1.522930401 1 11.05146758 -9.093944444 0.686385514 0.959869284 1.63148655 0.154146355 0.208958034 0.322931302 0.253792032 0.12409027 0.029685827 8.05E-10 9.093944444 0.671617266 AQTLPTSVVTITSES(ph)SPGK ddPTM_HeLa_CUDC101_4h_R1 1 AQTLPTSVVTITSESSPGK 19 0 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 AQTLPTSVVTITS(0.001)ES(0.86)S(0.139)PGK 122.5 5.36E-05 23962000 6260.9 5223.8 5268.1 4770.7 5690.3 5440 5442 5863.6 6380.8 8345.2 TRUE FALSE FALSE 5527.006793 5384.739086 5552.909421 4965.269767 5270.537906 5336.241064 5651.899763 6531.088523 6117.780723 8295.562379 0.666260651 0.649110794 0.669383119 0.598545287 0.635344256 0.643264533 0.681316046 0.787299067 0.737476309 1 13.01812407 -9.093323441 0.691811867 1.021033927 0.658841047 0.296602561 0.092358573 0.213839402 0.171279336 0.044464305 0.010719507 8.07E-10 9.093323441 -0.36219288 LVSPETEAS(ph)EESLQFNLEKPATGER ddPTM_HeLa_CUDC101_4h_R1 2 LVSPETEASEESLQFNLEKPATGER 25 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LVSPET(0.034)EAS(0.939)EES(0.027)LQFNLEKPATGER;LVSPETEAS(0.998)EES(0.001)LQFNLEKPATGER ; 148.44 3.32E-11 65640000 2205 1846.06 1785.85 1801.15 2032.1 1928.85 2348.6 1581.25 2409.5 2399.4 TRUE FALSE FALSE 1946.533243 1902.93492 1882.398453 1874.608682 1882.196032 1892.0604 2439.186289 1761.253108 2310.17939 2385.128262 0.816112606 0.797833371 0.789223155 0.78595718 0.789138287 0.793274068 1.02266462 0.738431193 0.968576586 1 11.21985114 -9.091614609 0.795739136 1.003871216 0.819034844 0.455471351 0.072829533 0.464038381 0.518069066 0.052146709 0.014324758 8.10E-10 9.091614609 -0.184836372 DCLIEDSDDEAGQS(ph) ddPTM_HeLa_CUDC101_4h_R1 1 DCLIEDSDDEAGQS 14 0 H3BSW6;Q2VPK5-3;Q2VPK5;H3BPG4 H3BSW6 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 1 0 DCLIEDS(0.369)DDEAGQS(0.631) 73.877 0.038496 13140000 1938.7 1560.6 1928.6 1796 1987.1 1723.8 1791.6 1875.3 1934.1 1214.9 TRUE FALSE FALSE 1711.448525 1608.680236 2032.86595 1869.248643 1840.515592 1690.921387 1860.702612 2088.776572 1854.375579 1207.673721 1.417144793 1.332048722 1.683290706 1.547809322 1.524017257 1.400147538 1.540732882 1.729586838 1.535493857 1 10.23801502 -9.09136337 0.325424232 0.802464959 1.594578422 0 0.196016154 0.965355563 0.149563099 0.286685857 0.054799018 8.10E-10 9.09136337 0.792113463 SQDVAVS(ph)PQQQQCSK ddPTM_HeLa_CUDC101_4h_R1 4 SQDVAVSPQQQQCSK 15 0 Q96F86;H3BQ37;H3BPW9;H3BTD6 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 1 0 SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK;SQDVAVS(1)PQQQQCSK ;;; 268.6 1.40E-85 671777000 21837 19004.5 19435.8 18296.5 21122.3 18931.8 17848.8 17206.1 19280.5 13817.2 TRUE FALSE FALSE 19277.29996 19590.00612 20486.55814 19042.71035 19564.15001 18570.70746 18537.23419 19164.77287 18485.74963 13735.01468 1.403515061 1.426282139 1.491557062 1.386435384 1.424399643 1.352070448 1.349633373 1.395322344 1.345884956 1 13.74557083 -9.090122735 0.735271682 0.98243625 1.406166723 0.214873071 0.111938712 0.153606442 0.142378409 0.03833407 0.009802642 8.13E-10 9.090122735 0.423730472 SSS(ph)LGNLK ddPTM_HeLa_CUDC101_4h_R1 2 SSSLGNLK 8 0 Q86W92-4;Q86W92;Q86W92-3;F5GZP6;H0YGH8;Q86W92-2 Q86W92-4;Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.185)S(0.185)S(0.631)LGNLK;S(0.185)S(0.185)S(0.631)LGNLK ; 95.483 0.022979 104215000 10955.7 8679.6 9201 9174.9 9237 9361.1 8775.4 8058.2 9803.8 13766.2 TRUE FALSE FALSE 9671.489454 8947.008188 9698.433892 9549.092079 8555.604913 9182.552614 9113.870118 8975.512916 9399.683214 13684.31803 0.706757139 0.653814693 0.70872614 0.697812785 0.62521237 0.671027419 0.666008353 0.655897714 0.686894531 1 13.74023592 -9.089755827 0.4914189 1.060437076 0.657620621 0.02109378 0.099651419 0.175407074 0.063539602 0.033955358 0.006488999 8.13E-10 9.089755827 -0.402816456 TSS(ph)TNEDEDLNPEQK ddPTM_HeLa_CUDC101_4h_R1 1 TSSTNEDEDLNPEQK 15 0 Q99081;Q99081-3;B4DGI9;Q99081-4;Q99081-2;B4DZP2;F5GY10 Q99081 TCF12 Transcription factor 12 1 0 T(0.254)S(0.013)S(0.374)T(0.358)NEDEDLNPEQK 153.92 3.38E-07 0 2528.9 1931.2 2123.3 2268.9 2407.9 2112.6 2356.2 2204.3 2280.5 2714 TRUE FALSE FALSE 2232.466176 1990.697983 2238.092021 2361.435549 2230.274014 2072.305675 2447.079423 2455.228602 2186.496825 2697.857007 0.827496109 0.737881206 0.82958141 0.875300486 0.826683552 0.768130286 0.907045635 0.910066247 0.810456899 1 11.39759817 -9.08937263 0.892048431 0.998729063 0.834081892 0 0.077180379 0.332695064 0.485053552 0.034607775 0.01060853 8.14E-10 9.08937263 -0.164647171 ELCTS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 ELCTSPR 7 0 Q86X02 Q86X02 CDR2L Cerebellar degeneration-related protein 2-like 1 0 ELCT(0.084)S(0.916)PR 87.696 0.036055 53369000 7080.9 6451.6 6243.7 6353.5 6363.9 6518.9 5906.3 4892.7 6672.6 2277.5 TRUE FALSE FALSE 6250.887636 6650.366149 6581.253308 6612.623192 5894.447776 6394.562844 6134.107969 5449.665191 6397.552604 2263.953329 2.76104969 2.937501434 2.906973931 2.920830173 2.603608343 2.824511779 2.709467502 2.407145555 2.825832371 1 11.1446285 -9.089009463 0.724680453 0.915721837 2.781723304 0 0.579611591 0.140921695 0.126268349 0.153882938 0.0388855 8.15E-10 9.089009463 1.866001467 EKPYFPIPEEYTFIQNVPLEDR ddPTM_HeLa_CUDC101_4h_R1 2 EKPYFPIPEEYTFIQNVPLEDR 22 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;A0A1X7SBS1;Q5RI18;A0A1W2PQL0;A0A1W2PP34;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PRZ7;A0A1W2PQ74 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 112.57 1.53E-05 178329000 13247.3 13195.7 13603.1 12989.2 14588.7 13744.7 13093.5 12540.4 14180.8 13564.9 FALSE FALSE TRUE 11694.47158 13602.24388 14338.52473 13518.95572 13512.52067 13482.54275 13598.52068 13967.94845 13596.26142 13484.21537 0.867271195 1.008753087 1.063356253 1.002576372 1.002099143 0.999875957 1.008476972 1.035874025 1.008309423 1 13.71898396 -7.060548056 15.00510481 0.937354673 1.017578996 0.25851421 0.041426952 3.224386458 798.5548314 0.008546544 0.010468377 8.70E-08 7.060548056 0.080224323 KPPATTYEGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 KPPATTYEGSPR 12 1 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 KPPAT(0.001)TYEGS(0.999)PR;KPPATTYEGS(1)PR ; 78.326 0.020624 42150000 8117.4 6572.5 6923 7318.5 7337.5 6697.4 6280.7 7903 8139.3 8928 TRUE FALSE FALSE 7165.890677 6774.990935 7297.278321 7616.980063 6796.227243 6569.658254 6522.948703 8802.645575 7803.794609 8874.895859 0.807433776 0.763388218 0.822238192 0.858261346 0.76578107 0.74025187 0.73498876 0.991859027 0.879311119 1 13.11551448 -9.088446997 0.704295945 1.0110308 0.803096393 0.239411827 0.079996377 0.49648377 0.415862626 0.059665485 0.014703782 8.16E-10 9.088446997 -0.207934408 EKQIESSDYDSSSSK(ac)GK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EKQIESSDYDSSSSKGKK 18 3 Q9UNL4-2;Q9UNL4-8;Q9UNL4-3;Q9UNL4-6;Q9UNL4 Q9UNL4-2 ING4 Inhibitor of growth protein 4 0 2 ; EKQIESSDYDSSSSK(1)GK(1)K;EKQIESSDYDSSSSK(1)GK(1)K 251.56 5.88E-53 37419000 8390.5 8677.1 9264.9 9208.6 10761.4 8549.5 9361.7 9462.7 6220.7 5597.3 FALSE TRUE FALSE 7406.978309 8944.431166 9765.788519 9584.166511 9967.552962 8386.432532 9722.783905 10539.89552 5964.280113 5564.007011 1.331230945 1.607552102 1.755171857 1.722529553 1.791434292 1.507264911 1.747442785 1.894299468 1.071939719 1 12.44190852 -7.629336811 0.700329298 1.050915323 1.754115997 0.878260839 0.102985753 0.14284422 0.153900251 0.034833302 0.032084297 2.35E-08 7.629336811 0.703200674 LSS(ph)ERPSSDGEGVVENGITTCNGK ddPTM_HeLa_CUDC101_4h_R1 1 LSSERPSSDGEGVVENGITTCNGK 24 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 LS(0.1)S(0.33)ERPS(0.285)S(0.285)DGEGVVENGITTCNGK 60.379 0.003715 118260000 3046.7 2838.9 2722.1 2359.7 2726.8 3127 2399 2010.7 2834.9 2109.1 TRUE FALSE FALSE 2689.570444 2926.363144 2869.26496 2455.938765 2525.649397 3067.357685 2491.530234 2239.58996 2718.044222 2096.554979 1.282852332 1.395796043 1.368561754 1.171416342 1.204666427 1.463046624 1.18839251 1.068223816 1.296433554 1 11.03380495 -9.08722028 0.889110628 1.002011105 1.272394215 0 0.143179044 0.425775826 0.616479736 0.072598365 0.022242822 8.18E-10 9.08722028 0.27038311 LGLAVIHGEAQCT(ph)ELDMDDGRHSPPMVK ddPTM_HeLa_CUDC101_4h_R1 3 LGLAVIHGEAQCTELDMDDGRHSPPMVK 28 1 C9J168;B4DP31;Q14558;Q14558-2;C9JUN4 C9J168 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 1 0 LGLAVIHGEAQCT(0.569)ELDMDDGRHS(0.431)PPMVK;LGLAVIHGEAQCT(0.718)ELDMDDGRHS(0.282)PPMVK;LGLAVIHGEAQCT(0.999)ELDMDDGRHS(0.001)PPMVK ;; 78.976 2.85E-05 128583000 10681.7 9662 8920.7 9054.1 10880.3 10060.5 8923.6 8367.9 9850.7 5126.9 TRUE FALSE FALSE 9429.607318 9959.674768 9402.980026 9423.365333 10077.68195 9868.612724 9267.786241 9320.467912 9444.649977 5096.404971 1.850246865 1.954254975 1.845022144 1.849022083 1.977409959 1.936387077 1.818494859 1.828831885 1.853198486 1 12.31526421 -9.086958289 0.63025148 0.919188342 1.900349763 0.010927284 0.267611162 0.125098936 0.080606019 0.067348589 0.015121798 8.19E-10 9.086958289 0.98116142 TGSVQTPPDLES(ph)S(ph)EEVDAAEGAPEVVGPK ddPTM_HeLa_CUDC101_4h_R1 1 TGSVQTPPDLESSEEVDAAEGAPEVVGPK 29 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7;H7BZ26 E9PHV5 SSFA2 Sperm-specific antigen 2 2 0 T(0.045)GS(0.023)VQT(0.44)PPDLES(0.88)S(0.613)EEVDAAEGAPEVVGPK 57.351 0.0090861 11413000 3402 2811.4 2729.2 2953.8 3272.9 3045.7 2663.9 2594.1 3576 3577.4 TRUE FALSE FALSE 3003.222717 2898.015902 2876.748807 3074.268731 3031.464688 2987.608347 2766.647515 2889.401858 3428.595766 3556.121466 0.844521973 0.814937265 0.808956847 0.864500485 0.852463763 0.84013113 0.777995786 0.812514951 0.964139105 1 11.79608889 -9.086690822 0.509927833 1.029439654 0.820172404 0.851594357 0.025765412 0.348778599 0.13753993 0.035806718 0.006986086 8.19E-10 9.086690822 -0.20926725 SQS(ph)MDAMGLS(ph)NKK ddPTM_HeLa_CUDC101_4h_R1 1 SQSMDAMGLSNKK 13 1 F2Z357;J3KPC5;P47736;P47736-3;P47736-4;A0A0A0MQY8;X6R8W7;P47736-2 F2Z357 RAP1GAP Rap1 GTPase-activating protein 1 2 0 SQS(1)MDAMGLS(1)NKK 89.46 0.036847 39534000 2073 1932 1680.8 1727.4 1963.4 1887.5 1676.4 1611.2 2082.7 1384.8 TRUE FALSE FALSE 1830.006082 1991.52263 1771.669132 1797.850838 1818.563894 1851.499082 1741.05931 1794.612495 1996.850224 1376.563148 1.329402204 1.446735395 1.287023508 1.306043127 1.321090061 1.345015726 1.264787098 1.303690643 1.45060561 1 10.42685508 -9.086440011 0.798358899 0.99340263 1.325843953 0 0.145801867 0.185493405 0.209118963 0.037473742 0.010391309 8.20E-10 9.086440011 0.332441323 LQSS(ph)QEPEAPPPR ddPTM_HeLa_CUDC101_4h_R1 1 LQSSQEPEAPPPR 13 0 Q5H909;Q9UNF1-2;Q9UNF1;Q5H907 Q5H909 MAGED2 Melanoma-associated antigen D2 1 0 LQS(0.386)S(0.614)QEPEAPPPR 137.93 0.00082632 44179000 1497.5 1159.8 1049.7 1171 1151.7 1113.8 1096.9 2721.2 1543.6 2180.8 TRUE FALSE FALSE 1321.96532 1195.532063 1106.449957 1218.758441 1066.741386 1092.556121 1139.2078 3030.970409 1479.972155 2167.828505 0.609810839 0.551488303 0.51039552 0.562202425 0.492078309 0.503986417 0.525506422 1.39815968 0.682697986 1 11.08203492 -9.085577116 0.852052736 1.00085456 0.621317118 0.022629851 0.274736144 0.700080602 0.919115081 0.16516654 0.048731959 8.21E-10 9.085577116 -0.379537442 KLSSERPS(ph)SDGEGVVENGITTCNGK ddPTM_HeLa_CUDC101_4h_R1 1 KLSSERPSSDGEGVVENGITTCNGK 25 2 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 KLS(0.079)S(0.079)ERPS(0.421)S(0.421)DGEGVVENGITTCNGK 57.826 0.0028489 29892000 6605.9 6385.5 5798.7 5100.2 6182.6 6013.4 5410.7 4491.3 5886.5 4440.1 TRUE FALSE FALSE 5831.566416 6582.229686 6112.195262 5308.208201 5726.521915 5898.704414 5619.392511 5002.571438 5643.855978 4413.690088 1.321245103 1.49132122 1.38482656 1.20266899 1.297445403 1.336456411 1.273173331 1.133421545 1.278715965 1 12.10776962 -9.085386653 0.914610036 1.004442313 1.307917778 0.07673175 0.123836533 0.309547332 0.478492943 0.059710208 0.018818187 8.22E-10 9.085386653 0.303475465 S(ph)RSPSSPELNNK ddPTM_HeLa_CUDC101_4h_R1 1 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.956)RS(0.039)PS(0.004)S(0.001)PELNNK 87.667 0.013785 14567000 2108.9 1143.1 1915.4 1777.7 1250.1 1363.2 1467.9 1055.3 2346.5 2478.6 TRUE FALSE FALSE 1861.697939 1178.317556 2018.952318 1850.20229 1157.882614 1337.199231 1524.517395 1175.431086 2249.776277 2463.857177 0.755603026 0.478241015 0.819427496 0.750937314 0.469947132 0.542725952 0.61875234 0.47706949 0.913111481 1 11.26670291 -9.084702659 0.162982851 1.356293089 0.398235341 0.63868968 0.110094428 4.567751507 0.242299525 1.101787687 0.356214035 8.23E-10 9.084702659 -0.958057748 GRLT(ph)PSPDIIVLSDNEAS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 0 GRLT(0.996)PS(0.004)PDIIVLS(0.052)DNEAS(0.531)S(0.417)PR 117.15 6.65E-06 28587000 3559.4 3125.4 2982.1 2706.8 3362 2898.9 3036.2 3065.3 4012.5 3882.5 TRUE FALSE FALSE 3142.172528 3221.689869 3143.321346 2817.195004 3113.991958 2843.608312 3153.307251 3414.241362 3847.103052 3859.406717 0.81415947 0.834762984 0.814457137 0.72995546 0.806857682 0.736799337 0.817044557 0.884654459 0.996812032 1 11.91416337 -9.08441555 0.548424301 1.027266589 0.794926168 0.772121815 0.042103326 0.442518916 0.206332238 0.052487644 0.010696091 8.23E-10 9.08441555 -0.232340422 LTPVSLSNS(ph)PIKGADCQEVPQDKDGYK ddPTM_HeLa_CUDC101_4h_R1 2 LTPVSLSNSPIKGADCQEVPQDKDGYK 27 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LTPVS(0.007)LS(0.081)NS(0.911)PIKGADCQEVPQDKDGY(0.001)K;LT(0.001)PVS(0.034)LS(0.278)NS(0.687)PIKGADCQEVPQDKDGYK ; 64.257 0.00075786 411400000 5815.4 5442.5 4648.1 4996.7 6502.1 4695.1 4695.6 4616.4 4928 2403.86 TRUE FALSE FALSE 5133.727628 5610.176974 4899.390346 5200.487024 6022.453037 4605.54879 4876.710865 5141.912316 4724.865754 2389.561734 2.148397154 2.347784907 2.050330099 2.176335079 2.52031699 1.927361292 2.040839036 2.151822338 1.977293864 1 11.22253032 -9.082466206 0.692356571 0.929553029 2.182445591 0.226139584 0.336849062 0.206300287 0.166400739 0.148035331 0.036197119 8.27E-10 9.082466206 1.252892561 KS(ph)VS(ph)PKLS(ph)PVISPR ddPTM_HeLa_CUDC101_4h_R1 1 KSVSPKLSPVISPR 14 2 Q08499-6;Q08499-12;Q08499-7 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 3 0 KS(0.882)VS(0.992)PKLS(0.987)PVIS(0.139)PR 95.195 0.014173 19068000 2100.3 2081.4 1811 1805.8 1496.9 1773 2010.4 1506.8 2018.5 1510.7 TRUE FALSE FALSE 1854.106018 2145.525467 1908.908138 1879.448329 1386.476669 1739.182979 2087.941801 1678.328021 1935.296576 1501.714289 1.234659636 1.428717488 1.271152676 1.251535224 0.92326262 1.158131738 1.390372201 1.117608079 1.288724886 1 10.55239464 -9.081608301 0.978080681 1.006746451 1.222521443 0 0.159697262 0.559308228 1.007463968 0.078042917 0.026245242 8.29E-10 9.081608301 0.215774992 EKVEEK(ac)ASR ddPTM_HeLa_CUDC101_4h_R1 2 EKVEEKASR 9 2 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 0 1 ; EKVEEK(1)ASR;EKVEEK(1)ASR 104.43 0.010932 20811300 9925.6 9173.6 10009.4 9958 11743 9853.4 10055.9 9678.8 8245.8 8106.6 FALSE TRUE FALSE 8762.136214 9456.227743 10550.53844 10364.13028 10876.74229 9665.462812 10443.75943 10780.59547 7905.904634 8058.381583 1.087332006 1.173464876 1.309262702 1.286130494 1.349742771 1.199429775 1.296012025 1.33781149 0.981078465 1 12.97627441 -7.18087905 1.270202763 1.029865521 1.297784523 0.881391545 0.045071672 0.097948715 0.304105342 0.008938599 0.01099403 6.59E-08 7.18087905 0.267919003 KSAEPSANTTLVS(ph)ETEEEGSVPAFGAAAK ddPTM_HeLa_CUDC101_4h_R1 2 KSAEPSANTTLVSETEEEGSVPAFGAAAK 29 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KS(0.001)AEPS(0.001)ANT(0.001)T(0.003)LVS(0.476)ET(0.476)EEEGS(0.043)VPAFGAAAK;KSAEPSANTTLVS(0.767)ET(0.222)EEEGS(0.011)VPAFGAAAK ; 93.176 1.35E-08 357095000 4276.29 3586.35 3617.15 3376.57 3881.46 3934.34 3534.26 3951.51 3911.4 4689.85 TRUE FALSE FALSE 3775.029769 3696.841193 3812.70407 3514.281119 3595.132429 3859.29902 3670.577592 4401.333926 3750.170436 4661.954564 0.809752587 0.792980957 0.817833812 0.753821401 0.771164193 0.827828536 0.787347354 0.944096272 0.804420203 1 12.18671923 -9.081562118 0.732533496 1.008121887 0.807711367 0 0.077222305 0.332557044 0.306690172 0.039097449 0.010069465 8.29E-10 9.081562118 -0.200410521 GEPPAAS(ph)PEASTCQSK ddPTM_HeLa_CUDC101_4h_R1 1 GEPPAASPEASTCQSK 16 0 Q7Z333-3;Q7Z333;Q7Z333-4;X6RI79 Q7Z333-3 SETX Probable helicase senataxin 1 0 GEPPAAS(0.976)PEAS(0.018)T(0.006)CQS(0.001)K 152.94 0.00013852 12504000 3149.8 3056.6 2934.2 3035 3116.2 2998 2980.4 3370.9 2863.2 1834.4 TRUE FALSE FALSE 2780.585219 3150.770223 3092.831727 3158.780418 2886.324134 2940.818145 3095.355026 3754.62963 2745.177684 1823.488907 1.524870926 1.727880115 1.696106686 1.732272901 1.582858071 1.612742547 1.697490461 2.059036178 1.50545346 1 10.83248571 -9.080612486 0.309831637 0.711408958 1.806397758 0.375876368 0.199299981 0.927973376 0.132187097 0.369778606 0.073099412 8.31E-10 9.080612486 1.0949888 EKYIDQEELNK ddPTM_HeLa_CUDC101_4h_R1 2 EKYIDQEELNK 11 1 P07900;P07900-2;Q14568;P08238;Q58FF8 P07900;P08238;Q58FF8 HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 0 0 ; ; 172.13 9.06E-07 33117000 7174.5 6707.3 6967.1 7261.9 7652.8 7586.6 6944.8 7368.2 6838.4 6333.8 FALSE FALSE TRUE 6333.515986 6913.943963 7343.7625 7558.071671 7088.268191 7441.898245 7212.663262 8206.966105 6556.518258 6296.126276 1.005938526 1.098126635 1.166393776 1.200432034 1.125814172 1.181980462 1.14557157 1.303494521 1.04135749 1 12.62024876 -7.004105405 1.951182405 1.001532071 1.185258663 0.737490824 0.045945759 0.099705451 0.751286623 0.007241329 0.009468137 9.91E-08 7.004105405 0.183726593 GRAS(ph)S(ph)HSSQTQGGGSVTK ddPTM_HeLa_CUDC101_4h_R1 1 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.936)S(0.712)HS(0.121)S(0.229)QT(0.002)QGGGSVTK 78.95 0.011692 7349100 2604.7 1693.9 2286.8 1993.4 2837.5 2604.5 2300.8 2250.1 2681.2 2771.2 TRUE FALSE FALSE 2299.381014 1746.087051 2410.431325 2074.699468 2628.183278 2554.823502 2389.542627 2506.242289 2570.679801 2754.716779 0.834706868 0.633853565 0.875019655 0.753144383 0.954066602 0.927435997 0.867436771 0.90980035 0.933192051 1 11.42768828 -9.079961808 1.034350949 0.993383687 0.844686966 0.216202184 0.090080648 0.491096457 1.002229634 0.047858766 0.016926717 8.32E-10 9.079961808 -0.148696721 ELAEDGYSGVEVR ddPTM_HeLa_CUDC101_4h_R1 4 ELAEDGYSGVEVR 13 0 E9PL09;P23396;P23396-2;E9PPU1;H0YEU2;E9PQ96;E9PJH4;F2Z2S8;E9PK82;H0YCJ7;H0YF32 E9PL09 RPS3 40S ribosomal protein S3 0 0 ;;; ;;; 252.14 2.37E-55 62168000 3202.07 3116.25 3145.48 2710.76 2861.44 3187.75 3084.6 3144.53 3334.33 3439.65 FALSE FALSE TRUE 2826.728209 3212.257969 3315.534163 2821.31651 2650.357272 3126.94898 3203.574055 3502.490585 3196.887506 3419.190809 0.826724324 0.939479002 0.969683866 0.825141581 0.77514167 0.91452895 0.936939245 1.024362424 0.934983651 1 11.73943922 -9.583012131 1.371229298 0.999960608 0.890052354 0.075057921 0.073923998 0.530237372 1.788941722 0.053472538 0.012482435 2.61E-10 9.583012131 -0.109908254 FYCDYCDTYLTHDSPS(ph)VRK ddPTM_HeLa_CUDC101_4h_R1 1 FYCDYCDTYLTHDSPSVRK 19 1 A0A0A0MRR7;P09234 A0A0A0MRR7 SNRPC U1 small nuclear ribonucleoprotein C 1 0 FYCDYCDTYLT(0.001)HDS(0.247)PS(0.752)VRK 95.591 0.0012115 12024000 3485.7 2980.8 3246.9 3031.9 3989.4 3208.1 3066.3 1439.2 3348.3 1152.1 TRUE FALSE FALSE 3077.11153 3072.634915 3422.437235 3155.553987 3695.10991 3146.910838 3184.568218 1603.032711 3210.281657 1145.247258 2.686853436 2.682944572 2.988382824 2.755347341 3.226473484 2.747800369 2.78068181 1.399726303 2.803134113 1 10.16144339 -9.079897213 0.721227058 0.921036084 2.712047044 0 0.714751098 0.358177135 0.318620037 0.373708342 0.095087998 8.32E-10 9.079897213 1.791010961 ELAPYDENWFYTR ddPTM_HeLa_CUDC101_4h_R1 2 ELAPYDENWFYTR 13 0 P39019;M0R2L9;M0QYF7;M0R140 P39019 RPS19 40S ribosomal protein S19 0 0 ; ; 272.65 5.20E-85 136740000 3781.1 2937.4 2537.5 2490.5 2652.4 2605.6 2400.1 2094.3 2450.4 3056.4 FALSE FALSE TRUE 3337.88519 3027.897812 2674.684926 2592.073355 2456.737736 2555.902521 2492.672661 2332.706647 2349.393475 3038.220397 1.098631684 0.996602424 0.880345918 0.853155142 0.808610771 0.841249872 0.820438393 0.767787172 0.773279475 1 11.56901081 -6.698038814 2.097352019 1.047005688 0.819054766 0.236945273 0.091817301 0.078390879 0.705952592 0.007031254 0.010284755 2.00E-07 6.698038814 -0.227950922 ISMPDLDLHLKS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 ISMPDLDLHLKSPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ISMPDLDLHLKS(1)PK 64.945 0.027455 283230000 7882.4 7157.4 6377.5 6729.7 8214.7 6981.6 6798.9 5019.6 6900.5 6091 TRUE FALSE FALSE 6958.437021 7377.91101 6722.286941 7004.166254 7608.717947 6848.437612 7061.13585 5591.010974 6616.058469 6054.770461 1.14924869 1.218528606 1.110246373 1.156801286 1.256648455 1.131081295 1.166210329 0.923405934 1.092701781 1 12.56385655 -9.079574508 0.865345451 1.000316271 1.145155781 0.11653106 0.087537678 0.578450619 0.78873944 0.052230894 0.015747284 8.33E-10 9.079574508 0.14483951 S(ph)SSASSPEMK ddPTM_HeLa_CUDC101_4h_R1 1 SSSASSPEMK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.851)S(0.011)S(0.135)AS(0.002)S(0.001)PEMK 158.08 8.17E-05 51744000 4552.9 2226.6 4219.8 5176.6 4027.2 4227.8 5366.8 2395.2 4793.2 5735.3 TRUE FALSE FALSE 4019.215964 2295.198907 4447.935152 5387.724123 3730.121479 4147.161759 5573.799274 2667.859886 4595.622267 5701.186181 0.7049789 0.402582697 0.780177144 0.945018098 0.654271122 0.727420861 0.97765607 0.467948213 0.806081773 1 12.4770464 -9.079495261 0.964723034 0.992334904 0.718724405 0.125021273 0.179503128 0.539541132 0.94278173 0.095029451 0.031645893 8.33E-10 9.079495261 -0.273610498 ELDALDANDELTPLGR ddPTM_HeLa_CUDC101_4h_R1 2 ELDALDANDELTPLGR 16 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 ; ; 255.08 4.88E-56 74139000 5453.5 4144.3 3860.7 4090.5 4528 4320.3 3836.7 4097.5 4049.1 3746.7 FALSE FALSE TRUE 4814.248997 4271.980971 4069.42112 4257.328271 4193.978461 4237.897476 3984.682804 4563.942837 3882.194384 3724.414462 1.292619027 1.147020831 1.092633798 1.143086602 1.126077268 1.137869461 1.069881681 1.225412178 1.042363685 1 11.86279791 -9.660221348 1.522198302 1.000446107 1.170002985 0.396859139 0.062913154 0.316406183 1.324639714 0.053363097 0.01213663 2.19E-10 9.660221348 0.169556878 ELDALGHELPVLAPQWEGYDELQTDGNR ddPTM_HeLa_CUDC101_4h_R1 1 ELDALGHELPVLAPQWEGYDELQTDGNR 28 0 B2ZP78;P55957-3;P55957;P55957-2 B2ZP78 BID BH3-interacting domain death agonist;BH3-interacting domain death agonist p15;BH3-interacting domain death agonist p13;BH3-interacting domain death agonist p11 0 0 89.272 5.37E-07 2871300 866.62 786.57 679.96 808.86 833.61 877.02 755.03 617.24 843.45 742.34 FALSE FALSE TRUE 765.0361173 810.8032894 716.7206944 841.848807 772.1162511 860.2923047 784.15176 687.5041066 808.682634 737.9245287 1.036740327 1.098761808 0.971265579 1.140833208 1.046334986 1.165826953 1.062644931 0.931672657 1.095887997 1 9.527329462 -8.018437597 0.704379491 1.004122951 1.06536902 0 0.072502979 0.954006612 1.051357867 0.024028267 0.016571927 9.58E-09 8.018437597 0.061246069 ELDDATEANEGLSR ddPTM_HeLa_CUDC101_4h_R1 2 ELDDATEANEGLSR 14 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 0 ; ; 216.84 9.81E-24 13492400 2827.05 1996.93 2487.81 2082.52 2412.73 2666.29 2239.05 2299.5 2488.71 2431.29 FALSE FALSE TRUE 2495.667485 2058.453046 2622.308534 2167.454167 2234.747715 2615.434961 2325.410909 2561.265785 2386.12432 2416.828579 1.03262081 0.851716611 1.085020492 0.896817501 0.924661242 1.082176445 0.962174533 1.059763116 0.987295641 1 11.23889943 ELDDRDHYGNK ddPTM_HeLa_CUDC101_4h_R1 2 ELDDRDHYGNK 11 1 C9J4M6;C9J2Y9;P30876 C9J4M6 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 0 0 ; ; 105.17 0.0049882 34227000 17568.4 13908.8 15877.6 16441.9 16480.8 15025.8 14803.5 11317.8 14746.9 16418.1 FALSE FALSE TRUE 15509.05878 14337.31364 16735.99108 17112.47175 15265.04422 14739.2079 15374.47595 12606.1726 14139.02654 16320.44441 0.950284097 0.878487943 1.025461725 1.048529765 0.935332632 0.903113146 0.942037825 0.772416013 0.866338329 1 13.99439272 -3.334269705 0.913934012 0.974378392 2.32E-20 0.420078602 0.059409034 5.264160642 0.941548005 0.007794152 7.657719817 0.000463159 3.334269705 -0.974378392 ELDDRDHYGNKR ddPTM_HeLa_CUDC101_4h_R1 1 ELDDRDHYGNKR 12 2 C9J4M6;C9J2Y9;P30876 C9J4M6 POLR2B DNA-directed RNA polymerase;DNA-directed RNA polymerase II subunit RPB2 0 0 44.564 0.037789 5362300 2188.8 1485.8 1751.6 1747.1 1724.4 1515.9 1717 1259.8 1589 1728.3 FALSE FALSE TRUE 1932.232182 1531.575737 1846.296794 1818.35429 1597.194447 1486.986733 1783.225265 1403.21054 1523.500747 1718.019995 1.124685503 0.891477248 1.074665487 1.058401122 0.929671629 0.865523532 1.037953732 0.816760308 0.886777076 1 10.74653111 -5.733038277 6.523373303 1.047633526 0.917187053 0.108442786 0.093144192 0.146512732 19.8632664 0.01173573 0.023209543 1.85E-06 5.733038277 -0.130446473 LEQLESGEEELVLAEYES(ph)DEEKKVASR ddPTM_HeLa_CUDC101_4h_R1 1 LEQLESGEEELVLAEYESDEEKKVASR 27 2 F5GXJ8;F6WZM0;F5H235;C9K0E8;B4DMS8;Q96FC9-5;Q96FC9-4;Q96FC9-3;Q96FC9-2;Q96FC9 F5GXJ8 DDX11 Probable ATP-dependent RNA helicase DDX11 1 0 LEQLESGEEELVLAEY(0.448)ES(0.501)DEEKKVAS(0.051)R 51.966 0.0087401 7695700 2898.4 2277 2598.8 2632.8 2891.8 2560.6 2151.3 2553.2 2609.7 2299.1 TRUE FALSE FALSE 2558.653946 2347.151671 2739.298989 2740.176964 2678.477675 2511.760821 2234.276362 2843.845968 2502.127061 2285.424851 1.119552868 1.027008904 1.198595083 1.198979246 1.171982388 1.099034528 0.977619702 1.244340179 1.094819224 1 11.15824667 -9.07756683 0.515213949 0.980436777 1.132541366 0.106425718 0.081595361 1.371644479 0.556561123 0.102835821 0.020392497 8.36E-10 9.07756683 0.152104589 ELDEEGSDPPLPGR ddPTM_HeLa_CUDC101_4h_R1 1 ELDEEGSDPPLPGR 14 0 H7C0T1;H7C2R9;C9JQV0;Q9BRJ6 H7C0T1 C7orf50 Uncharacterized protein C7orf50 0 0 126.03 0.006084 3663400 1563 1433.7 1429.2 1153.1 1492.8 1563.5 1167.1 1248.7 1636.5 1676.6 FALSE FALSE TRUE 1379.787509 1477.870598 1506.466875 1200.128402 1382.679118 1533.678842 1212.115438 1390.846961 1569.042777 1666.627509 0.827891957 0.886743192 0.903901362 0.72009396 0.829626963 0.920228926 0.72728635 0.834527783 0.941447786 1 10.70271598 -12.39404974 0.225997426 1.537659431 0.802294153 0.425813541 0.064424819 16.64843616 0.334070698 4.03283438 0.048509549 4.04E-13 12.39404974 -0.735365278 TGVTTAVIQPLSVPVQQVHS(ph)PTSYLCRPDGTTTAYFPPVFTK ddPTM_HeLa_CUDC101_4h_R1 1 TGVTTAVIQPLSVPVQQVHSPTSYLCRPDGTTTAYFPPVFTK 42 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;D6R9Z5;D6RBH5;D6RBB1;H0Y952;Q8WX93-6 Q8WX93-3 PALLD Palladin 1 0 TGVTTAVIQPLS(0.095)VPVQQVHS(0.416)PT(0.125)S(0.125)Y(0.113)LCRPDGT(0.039)T(0.039)T(0.032)AY(0.014)FPPVFTK 62.822 3.89E-05 21017000 1496.2 1151.2 1201.8 1144.1 2203.7 1761.5 1678.3 988.18 1717.1 671.42 TRUE FALSE FALSE 1320.817704 1186.667107 1266.772943 1190.761343 2041.137441 1727.902322 1743.032593 1100.670417 1646.320411 667.426364 1.978971427 1.777974577 1.897996561 1.784108941 3.058221178 2.588903309 2.611572882 1.64912637 2.466669733 1 9.382464865 -9.077310727 0.253272052 0.385324825 2.515042832 0 0.607206586 2.555476905 0.258035192 1.753162405 0.394583148 8.37E-10 9.077310727 2.129718007 GS(ph)DSLIK ddPTM_HeLa_CUDC101_4h_R1 2 GSDSLIK 7 0 Q99623-2;Q99623 Q99623-2 PHB2 Prohibitin-2 1 0 GS(1)DSLIK;GS(1)DSLIK ; 105.1 0.015999 18780300 10446.1 8785.7 8282.1 9019.1 9513.5 9534.4 8782.9 7534.9 10593.3 11512.6 TRUE FALSE FALSE 9221.623993 9056.377003 8729.855378 9386.937882 8811.708059 9352.547205 9121.659395 8392.642559 10156.63969 11444.12254 0.805795635 0.791356172 0.762824353 0.820240944 0.76997673 0.817235849 0.797060619 0.733358327 0.887498334 1 13.48231923 -9.077193865 0.541452931 1.030277006 0.781424395 0.660276846 0.041936954 0.238389504 0.108363554 0.030046423 0.006128982 8.37E-10 9.077193865 -0.248852612 ELDLGAQRERWETFRK ddPTM_HeLa_CUDC101_4h_R1 1 ELDLGAQRERWETFRK 16 3 A0A0U1RRI6 A0A0U1RRI6 0 0 39.509 0.040672 504310 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 KGDVEGSQS(ph)QDEGEGSGESER ddPTM_HeLa_CUDC101_4h_R1 5 KGDVEGSQSQDEGEGSGESER 21 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 KGDVEGSQS(1)QDEGEGSGESER;KGDVEGS(0.002)QS(0.998)QDEGEGSGESER;KGDVEGS(0.002)QS(0.998)QDEGEGSGESER;KGDVEGSQS(1)QDEGEGSGESER;KGDVEGSQS(0.999)QDEGEGS(0.001)GESER ;;;; 165.65 4.44E-08 72067400 8857.91 6944.03 7876.63 7671.14 8452.57 8078.22 7317.32 7296.63 8852.11 8721.66 TRUE FALSE FALSE 7819.599218 7157.967334 8302.464443 7984.002247 7829.040751 7924.141413 7599.551484 8127.248865 8487.222279 8669.783178 0.901937114 0.825622416 0.957632304 0.920899875 0.90302613 0.913995339 0.876556118 0.93742239 0.978942853 1 13.0817802 -9.076924224 0.870106811 0.999692691 0.904268585 0.489195316 0.034286545 0.359410798 0.496744685 0.02139734 0.006504581 8.38E-10 9.076924224 -0.095424106 TSDST(ph)PDPQRVPLR ddPTM_HeLa_CUDC101_4h_R1 2 TSDSTPDPQRVPLR 14 1 P52948-6;P52948-2;P52948-5;P52948;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 TSDS(0.049)T(0.951)PDPQRVPLR;TS(0.004)DS(0.133)T(0.863)PDPQRVPLR ; 143.94 0.0069437 22350000 4411.7 3797.4 3793.7 3526.4 4694.1 4235.8 3621.6 3025.8 3711.7 3285 TRUE FALSE FALSE 3894.567214 3914.393393 3998.798897 3670.221834 4347.825595 4155.009172 3761.286325 3370.244841 3558.702155 3265.460674 1.192654759 1.198726239 1.224574202 1.123952239 1.331458569 1.272411334 1.151839419 1.032088632 1.089800953 1 11.67307082 -9.076856312 0.692744192 0.98862659 1.198193123 0.315627037 0.08147432 0.575109965 0.465718324 0.068947309 0.016984242 8.38E-10 9.076856312 0.209566533 GILAADESTGS(ph)IAK ddPTM_HeLa_CUDC101_4h_R1 1 GILAADESTGSIAK 14 0 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 GILAADES(0.124)T(0.273)GS(0.603)IAK 106.55 0.0044106 46123000 3132.2 2175 2806.1 2766.4 3061.5 2836.9 2744.1 2674.2 3020.4 3773.6 TRUE FALSE FALSE 2765.048264 2242.009172 2957.806254 2879.225749 2835.659244 2782.790859 2849.940856 2978.620119 2895.897834 3751.154459 0.737119277 0.597685112 0.788505588 0.767557236 0.755943077 0.74184918 0.759750335 0.794054244 0.772001757 1 11.87311895 -9.076650844 0.851803194 1.000423968 0.742544194 0.133173829 0.086179245 0.23067811 0.303565512 0.036854884 0.010987644 8.38E-10 9.076650844 -0.257879774 IMS(ph)CSPDTQCSR ddPTM_HeLa_CUDC101_4h_R1 2 IMSCSPDTQCSR 12 0 Q9C0C9;K7EQ12 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 IMS(0.728)CS(0.272)PDTQCSR;IMS(0.461)CS(0.461)PDT(0.079)QCSR ; 159.66 0.00013178 50124000 3119.2 2900.7 2753.5 3028.4 3033.9 2851.5 2494.6 1650.61 2835.3 743.18 TRUE FALSE FALSE 2753.572104 2990.067129 2902.362539 3151.911242 2810.095241 2797.112388 2590.817558 1838.50877 2718.427734 738.7595323 3.727291472 4.04741597 3.928697244 4.266491468 3.803802345 3.78622849 3.506983591 2.488643043 3.679719334 1 9.52896103 -9.075167759 0.75666343 0.912436661 3.742761485 0 0.932338779 0.224550711 0.224159315 0.377044785 0.100833204 8.41E-10 9.075167759 2.830324824 DGSPEAPAS(ph)PEREEVALSEYK ddPTM_HeLa_CUDC101_4h_R1 2 DGSPEAPASPEREEVALSEYK 21 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 DGSPEAPAS(1)PEREEVALSEYK;DGSPEAPAS(0.996)PEREEVALS(0.004)EYK ; 93.92 0.00024704 148615000 6663.8 5719.9 5565.9 5539.8 5670 5189.6 5322.2 5471.4 6501.6 7128.2 TRUE FALSE FALSE 5882.679466 5896.123339 5866.80939 5765.736989 5251.735396 5090.617026 5527.479037 6094.24206 6233.601296 7085.801149 0.830206683 0.83210398 0.827966982 0.813702906 0.741163248 0.718425047 0.780078204 0.860063941 0.879731334 1 12.79071526 -9.07511422 0.354523965 1.065908842 0.772283499 0.492474027 0.053004803 0.828293009 0.152493946 0.096137134 0.018165997 8.41E-10 9.07511422 -0.293625343 ELEAELEDER ddPTM_HeLa_CUDC101_4h_R1 2 ELEAELEDER 10 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 0 ; ; 123.86 0.021565 28555000 2735.7 2421.3 2154.6 2297.29 2486.2 2162.1 2329.2 2421.3 2611.9 2306 FALSE FALSE TRUE 2415.025393 2495.897383 2271.084193 2390.983416 2302.797979 2120.861545 2419.038024 2696.931005 2504.236376 2292.283809 1.053545544 1.088825639 0.990751749 1.043057324 1.004586766 0.925217696 1.055296039 1.176525783 1.092463493 1 11.16256996 TVSS(ph)PPTSPR ddPTM_HeLa_CUDC101_4h_R1 1 TVSSPPTSPR 10 0 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 1 0 TVS(0.091)S(0.848)PPT(0.057)S(0.003)PR 105.17 0.0016256 0 2313.9 1906.5 1914 1951.8 2133.4 2269.4 2031 1601.3 2034.4 2566.2 TRUE FALSE FALSE 2042.66815 1965.237005 2017.47663 2031.40284 1976.023332 2226.114976 2109.33635 1783.585519 1950.541171 2550.936128 0.80075237 0.770398358 0.790876968 0.796336223 0.774626738 0.872665902 0.826887168 0.699188623 0.764637401 1 11.31681106 -9.074796961 0.670967377 1.014068832 0.79192976 0 0.083480157 0.307648238 0.231228585 0.038520701 0.009251309 8.42E-10 9.074796961 -0.222139072 EGSCIFPEELS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 EGSCIFPEELSPK 13 0 Q86YC2;H3BN63 Q86YC2 PALB2 Partner and localizer of BRCA2 1 0 EGSCIFPEELS(1)PK;EGSCIFPEELS(1)PK ; 167.03 9.90E-06 74575000 6912.8 6377.5 5920.9 6059 6259.4 5942.5 5699.7 5887.7 6155.5 3320.7 TRUE FALSE FALSE 6102.492063 6573.983216 6241.001764 6306.112209 5797.656532 5829.156713 5919.539338 6557.931969 5901.767685 3300.948329 1.848708751 1.991543811 1.89066933 1.910394099 1.756360886 1.765903653 1.793284459 1.986681195 1.787900657 1 11.68866484 -9.074394152 0.711489225 0.956591924 1.870529716 0.124713172 0.252839745 0.151463267 0.130796368 0.080059553 0.020258523 8.43E-10 9.074394152 0.913937792 ELEASEELDTICPK ddPTM_HeLa_CUDC101_4h_R1 1 ELEASEELDTICPK 14 0 O76003 O76003 GLRX3 Glutaredoxin-3 0 0 102.4 0.035572 5302900 1425 1188.4 1189 1174.3 1134.1 1187.9 1126.7 1135.8 1192.3 879.63 FALSE FALSE TRUE 1257.96366 1225.013195 1253.280937 1222.19303 1050.439702 1165.242787 1170.157196 1265.094881 1143.152889 874.3979216 1.438662683 1.40097908 1.433307314 1.397753814 1.201329139 1.332623006 1.338243341 1.446818262 1.307360026 1 9.772146162 -9.289535495 0.936385495 0.992207422 1.372512877 0.225402631 0.115357769 0.215861082 0.328419871 0.057041017 0.014172751 5.13E-10 9.289535495 0.380305455 ELEDATETADAMNR ddPTM_HeLa_CUDC101_4h_R1 7 ELEDATETADAMNR 14 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;;;;;; ;;;;;; 371.4 1.53E-274 203517000 15125.53 13092.79 12755.96 12884.42 14109.94 13563.02 13139.35 13032.17 13191.01 13188.49 FALSE FALSE TRUE 13352.5383 13496.16334 13445.58578 13409.90234 13069.07784 13304.32799 13646.13913 14515.69955 12647.27098 13110.04427 1.018496812 1.029452156 1.025594231 1.022872391 0.996875187 1.014819455 1.040891918 1.10721972 0.96470086 1 13.67838494 -4.279812824 2.02950679 1.011999907 1.132551265 0.730749533 0.018087525 0.191435131 0.867236213 0.001751272 0.041902554 5.25E-05 4.279812824 0.120551357 ELEDLEVDGQK ddPTM_HeLa_CUDC101_4h_R1 2 ELEDLEVDGQK 11 0 Q08J23;A0A140T9Y7 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 0 ; ; 166.97 0.0001177 17308700 4406.2 4134.7 3937.4 3386.4 3322.1 3983.7 3291.8 2983.8 4108.5 4636.6 FALSE FALSE TRUE 3889.711915 4262.085206 4150.267754 3524.512029 3077.035302 3907.71756 3418.765829 3323.463731 3939.145891 4609.021297 0.843934463 0.924726733 0.90046617 0.764698577 0.667611431 0.847841073 0.741755268 0.721077972 0.854659946 1 12.17024472 -13.5228068 0.033497271 2.243921978 5.33E-06 0.426679977 0.07346364 398.8797606 1.070912891 57.15040519 22.24405154 3.00E-14 13.5228068 -2.243916645 ELEDPESAMLDTLDR ddPTM_HeLa_CUDC101_4h_R1 2 ELEDPESAMLDTLDR 15 0 F8VS10;Q86XZ4 F8VS10 SPATS2 Spermatogenesis-associated serine-rich protein 2 0 0 ; ; 269.44 7.24E-85 14343500 4148.6 3759.7 3487.4 3207.4 3820.2 3017.4 3605.5 3603.3 3522 3373.1 FALSE FALSE TRUE 3662.307397 3875.531901 3675.939393 3338.211636 3538.391457 2959.848122 3744.565343 4013.485107 3376.821669 3353.036651 1.092236017 1.155827479 1.096301584 0.99557863 1.055279684 0.882736585 1.11676839 1.196970247 1.007093575 1 11.71125254 APES(ph)DTGDEDQDQER ddPTM_HeLa_CUDC101_4h_R1 1 APESDTGDEDQDQER 15 0 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 APES(0.997)DT(0.003)GDEDQDQER 218.12 3.51E-25 6986400 158 137 65.086 121.69 65.197 224.18 218.99 138.39 227.84 216.02 TRUE FALSE FALSE 139.4794795 141.2208076 68.60474603 126.6530442 60.3875472 219.90414 227.4365177 154.1437582 218.4483388 214.7351034 0.649542051 0.657651243 0.319485473 0.589810619 0.281218796 1.024071689 1.059149222 0.717832137 1.017292167 1 7.746414242 -9.074378599 0.902997992 0.995122307 0.662829387 0.250539997 0.237348301 0.742462228 1.118267737 0.155544307 0.049078401 8.43E-10 9.074378599 -0.33229292 NQGETPTTEVPAPFFLPASLS(ph)ANNTPTR ddPTM_HeLa_CUDC101_4h_R1 1 NQGETPTTEVPAPFFLPASLSANNTPTR 28 0 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 1 0 NQGETPTTEVPAPFFLPAS(0.091)LS(0.565)ANNT(0.224)PT(0.12)R 64.6 0.00077576 3383800 467.91 360.91 394.19 516.92 378.66 462.62 386.68 306.7 462.38 373.77 TRUE FALSE FALSE 413.0622991 372.0292093 415.5011038 538.0022319 350.7270062 453.7962943 401.5943771 341.6134883 443.3205007 371.5467994 1.111736933 1.001298383 1.118300856 1.448006638 0.943964547 1.221370484 1.080871583 0.91943596 1.193175399 1 8.537400131 -9.074340031 0.623903879 0.990682348 1.11503245 0 0.154590017 2.076221223 1.314755255 0.140604639 0.031806864 8.43E-10 9.074340031 0.124350102 ELEEDFIK ddPTM_HeLa_CUDC101_4h_R1 4 ELEEDFIK 8 0 H3BT58;Q14019 H3BT58 COTL1 Coactosin-like protein 0 0 ;;; ;;; 155.75 0.0088565 23889200 10319.3 8553.7 8220.9 8301.9 8379.9 9023.4 8515.3 7938 8509.3 10555.8 FALSE FALSE TRUE 9109.687297 8817.229358 8665.346721 8640.487366 7761.731472 8851.293679 8843.737973 8841.629833 8158.543052 10493.01363 0.868166917 0.840295235 0.825820591 0.823451457 0.739704697 0.843541616 0.842821546 0.842620637 0.777521438 1 13.35714146 -8.540076447 0.519996717 1.008536395 0.814976417 0 0.073977307 0.283088769 0.153735277 0.025292278 0.00920085 2.88E-09 8.540076447 -0.193559978 HSS(ph)PTEERDEPAYPR ddPTM_HeLa_CUDC101_4h_R1 1 HSSPTEERDEPAYPR 15 1 F5H4R1;J3KNB8;F5H538;Q9Y6R4-2;Q9Y6R4 F5H4R1 MAP3K4 Mitogen-activated protein kinase kinase kinase 4 1 0 HS(0.076)S(0.777)PT(0.147)EERDEPAYPR 59.606 0.038384 6097300 1202.9 1110.4 1063.4 957.89 1022.7 1139.8 1104.6 798.7 1292.5 989.99 TRUE FALSE FALSE 1061.897885 1144.610108 1120.890621 996.9568946 947.2574585 1118.060214 1147.204792 889.6207795 1239.222603 984.1014955 1.079053218 1.163101685 1.138999001 1.013063083 0.962560735 1.136122869 1.165738287 0.903992915 1.259242678 1 9.942663306 -9.072613646 1.038233565 1.003322107 1.074529184 0 0.11579234 0.916917296 1.889534339 0.042688142 0.015268923 8.46E-10 9.072613646 0.071207076 THS(ph)LSNADGQYDPYTDSR ddPTM_HeLa_CUDC101_4h_R1 1 THSLSNADGQYDPYTDSR 18 0 A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-4;Q8IVL1-8;Q8IVL1-9;Q8IVL1-10;Q8IVL1-13;Q8IVL1-12;Q8IVL1-11;Q8IVL1-3;Q8IVL1-2;Q8IVL1;Q8IVL1-5;E9PNV5;Q8IVL1-6 A0A0A0MTL4 NAV2 Neuron navigator 2 1 0 T(0.292)HS(0.696)LS(0.012)NADGQYDPYTDSR 95.344 0.0022209 2238200 993.6 572.19 952.03 808.7 1028.1 1034.5 959.59 708.79 1009.1 1217.3 TRUE FALSE FALSE 877.1317142 589.8184957 1003.499622 841.6822815 952.2591113 1014.768636 996.6017077 789.4757886 967.5044709 1210.059445 0.724866632 0.487429356 0.829297788 0.695571019 0.786952339 0.838610566 0.823597313 0.652427277 0.799551191 1 10.24086221 -9.071489248 0.938132526 0.994062533 0.735257416 0.183713477 0.116413896 0.362345573 0.595699307 0.05970767 0.01957018 8.48E-10 9.071489248 -0.258805117 ELEELKEIEADLER ddPTM_HeLa_CUDC101_4h_R1 1 ELEELKEIEADLER 14 1 K7EJH0;K7EMX1;K7EJV2;K7ESQ2;Q8NBT2 K7EJH0 SPC24 Kinetochore protein Spc24 0 0 146.67 0.00041061 5129200 1960.2 1534.7 1568 1525.6 1888.8 1516.2 1800.4 1923.9 2140.5 1826.5 FALSE FALSE TRUE 1730.428327 1581.982288 1652.770823 1587.820562 1749.466987 1487.281011 1869.842031 2142.908999 2052.267684 1815.635897 0.953070123 0.871310317 0.910298604 0.87452587 0.963556069 0.819151579 1.029855179 1.180252606 1.130329978 1 10.8262592 -4.388368284 3.694023906 0.947498865 1.180352332 0.444576716 0.081569309 0.138379461 3.001932197 0.008986833 0.067789537 4.09E-05 4.388368284 0.232853467 S(ph)HDSDDS(ph)DYASSK ddPTM_HeLa_CUDC101_4h_R1 1 SHDSDDSDYASSK 13 0 Q9UKJ3;Q9UKJ3-2 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 2 0 S(0.96)HDS(0.039)DDS(0.974)DY(0.014)AS(0.01)S(0.002)K 130.66 0.010461 7397700 3670.5 2419.2 3079.2 3674.4 3269.6 3273.5 3053.5 1873.2 3672.8 4686.7 TRUE FALSE FALSE 3240.249554 2493.732685 3245.670866 3824.257914 3028.408122 3211.063442 3171.274518 2086.437516 3521.405629 4658.8233 0.695508146 0.535270931 0.696671811 0.820863482 0.650037129 0.689243449 0.680702897 0.447846459 0.755857306 1 12.1857499 -9.070915884 0.529123998 1.052726355 0.646898152 0.268177947 0.121398529 0.613250224 0.265371822 0.124381068 0.025224738 8.49E-10 9.070915884 -0.405828202 ELEEWYAR ddPTM_HeLa_CUDC101_4h_R1 1 ELEEWYAR 8 0 P09496-2;P09496-4;P09496-3;P09496;F8WF69;P09496-5;C9J8P9 P09496-2 CLTA Clathrin light chain A 0 0 122.18 0.0010957 0 1865.6 1822.3 1900.7 1598.9 2118.9 1744 1460 1807 1852.1 1822.4 FALSE FALSE TRUE 1646.917196 1878.442903 2003.457591 1664.110053 1962.592968 1710.736106 1516.312689 2012.701576 1775.755654 1811.560284 0.909115314 1.036919897 1.105929297 0.918605949 1.083371603 0.944344012 0.837020276 1.111032072 0.980235474 1 10.8230171 -3.767775383 7.950588657 0.970604129 10.96903221 0.194780815 0.078361751 29949.52944 12590.10733 0.010825915 5338610.351 0.000170697 3.767775383 9.998428084 ELEEYRR ddPTM_HeLa_CUDC101_4h_R1 1 ELEEYRR 7 1 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;H0YG19 E7EV99 ADD1 Alpha-adducin 0 0 94.262 0.002007 0 2084.1 1448.3 1357.9 1683 1541.3 1283 1297.7 1266.4 1647 1725.4 FALSE FALSE TRUE 1839.804957 1492.920406 1431.312181 1751.640015 1427.60137 1258.528913 1347.752724 1410.561857 1579.109963 1715.137244 1.072686727 0.870437868 0.834517579 1.021282711 0.832354014 0.73377738 0.785798762 0.822419233 0.920690148 1 10.74410831 -6.306063761 0.676861548 1.033548476 0.776676173 0.407408276 0.080833536 0.36338982 0.3257501 0.01726236 0.042583704 4.94E-07 6.306063761 -0.256872303 ELEK(ac)VCNPIITK ddPTM_HeLa_CUDC101_4h_R1 1 ELEKVCNPIITK 12 1 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 1 ELEK(1)VCNPIITK 193.15 7.08E-09 865970 438.01 327.32 413.07 388.08 339.58 296.32 434.63 406.82 354.73 228.41 FALSE TRUE FALSE 386.6671318 337.4043412 435.4018137 403.9075798 314.5298599 290.6681897 451.3938247 453.1307444 340.1078793 227.0514072 1.70299377 1.486026206 1.91763539 1.778925684 1.385280382 1.280186691 1.988068827 1.995718723 1.497933369 1 7.826875168 -9.323152919 0.567883756 0.866027832 1.701197828 0.205447889 0.279385103 0.840964955 0.370495158 0.379211191 0.058157249 4.75E-10 9.323152919 0.835169995 VASDT(ph)EEADR ddPTM_HeLa_CUDC101_4h_R1 2 VASDTEEADR 10 0 A0A590UJ84;B1AKN3;Q9P2R6-2;Q9P2R6;D6RA28 A0A590UJ84 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 VAS(0.11)DT(0.89)EEADR;VAS(0.077)DT(0.923)EEADR ; 142.19 0.0050551 40358000 3389.4 2857.9 2812.2 2729.4 2685.5 2471.7 3014.1 2230.14 2893.2 3793 TRUE FALSE FALSE 2992.09967 2945.948512 2964.236038 2840.716729 2487.396015 2424.556441 3130.354847 2484.010123 2773.941071 3770.439067 0.793567968 0.781327707 0.786177945 0.753418018 0.659709909 0.643043528 0.830236158 0.658811899 0.735707705 1 11.88051682 -9.070378117 0.293170183 1.112714099 0.689468919 0.03181554 0.09801832 1.152229525 0.149577082 0.171677551 0.035317259 8.50E-10 9.070378117 -0.42324518 T(ph)QSAPLPQNAQALQHLVIQQQHQQFLEK ddPTM_HeLa_CUDC101_4h_R1 1 TQSAPLPQNAQALQHLVIQQQHQQFLEK 28 0 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 1 0 T(0.545)QS(0.455)APLPQNAQALQHLVIQQQHQQFLEK 80.452 6.75E-06 16640000 1605.6 1408.6 1267.9 1409.8 1498.2 1213.9 1228.7 1502.4 1455.5 1653.2 TRUE FALSE FALSE 1417.394002 1451.997296 1336.446509 1467.297738 1387.680771 1190.74688 1276.091371 1673.427143 1395.503674 1643.366693 0.862494054 0.883550399 0.813236945 0.892860823 0.844413348 0.724577713 0.776510426 1.018291992 0.849173638 1 10.68243872 -9.067665674 0.458462734 1.031323799 0.836307221 0 0.087127787 1.280179164 0.402889787 0.115060244 0.022019614 8.56E-10 9.067665674 -0.195016578 ELELELDR ddPTM_HeLa_CUDC101_4h_R1 2 ELELELDR 8 0 O94992 O94992 HEXIM1 Protein HEXIM1 0 0 ; ; 133.58 0.028584 5246000 3612.9 3007.6 2696.9 2412.8 2876.5 3067.9 2727.1 2805.4 2719 3496.3 FALSE FALSE TRUE 3189.401339 3100.260591 2842.702572 2511.204413 2664.306326 3009.384919 2832.285161 3124.755396 2606.921669 3475.503852 0.917680277 0.892031982 0.817925312 0.722543988 0.766595705 0.865884501 0.81492793 0.899079825 0.750084529 1 11.76300643 -7.410135091 0.99943393 0.976204646 0.811587261 0 0.086586757 0.218034264 0.436335912 0.012142619 0.013379046 3.89E-08 7.410135091 -0.164617385 GGTLGGGTLGPPS(ph)PPGAPSPPEPGGEIELVFRPHPLLVEK ddPTM_HeLa_CUDC101_4h_R1 1 GGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEK 40 1 Q06587;Q06587-2 Q06587 RING1 E3 ubiquitin-protein ligase RING1 1 0 GGT(0.001)LGGGT(0.045)LGPPS(0.867)PPGAPS(0.087)PPEPGGEIELVFRPHPLLVEK 78.556 3.07E-08 62751000 2955.9 2404.5 2437.2 2262.5 2607.9 2373.1 1947.6 2296.9 2358.1 3310.9 TRUE FALSE FALSE 2609.413883 2478.579795 2568.962404 2354.774529 2415.520413 2327.837071 2022.719584 2558.369812 2260.89812 3291.20662 0.79284414 0.75309152 0.780553366 0.715474536 0.733931561 0.707289861 0.614582984 0.777334913 0.686951134 1 11.68440089 -9.067278849 0.28365574 1.122151353 0.676996356 0 0.10623315 0.835858373 0.102622634 0.128418965 0.027021434 8.56E-10 9.067278849 -0.445154997 ELENEENQEEQGLEEKGEEFAR ddPTM_HeLa_CUDC101_4h_R1 1 ELENEENQEEQGLEEKGEEFAR 22 1 Q8IWE2-2;Q8IWE2 Q8IWE2-2 FAM114A1 Protein NOXP20 0 0 182 3.49E-13 2260300 330.6 541.9 356.52 405.99 427.18 436.76 445.78 394.55 439.29 418.61 FALSE FALSE TRUE 291.8475692 558.5952967 375.7945496 422.548027 395.6677825 428.4295307 462.9738839 439.4639772 421.1822803 416.1200891 0.701354193 1.34238964 0.903091582 1.015447315 0.95084999 1.029581464 1.112596811 1.056098921 1.012165217 1 8.700856129 -7.293392994 24.99831442 0.858972829 1.047759146 0.183120703 0.138193883 663.3373245 518947.8943 0.025469946 0.029127289 5.09E-08 7.293392994 0.188786317 VLS(ph)PLIIK ddPTM_HeLa_CUDC101_4h_R1 1 VLSPLIIK 8 0 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 0 VLS(1)PLIIK 107.79 0.012619 134980000 7208.9 6407.1 5714.6 5827.4 6777 6399.3 5817.8 6345.6 6631.8 7435.9 TRUE FALSE FALSE 6363.88367 6604.495157 6023.548562 6065.06656 6277.074212 6277.244014 6042.194495 7067.957454 6358.434397 7391.670936 0.860953325 0.893505029 0.81491027 0.820527133 0.849209098 0.849232071 0.81743283 0.956205642 0.860216107 1 12.85168482 -9.065271465 0.604100781 1.014299788 0.850782161 0 0.058644583 0.460348396 0.271536921 0.040279254 0.008985572 8.60E-10 9.065271465 -0.163517627 LHVGNIS(ph)PTCTNK ddPTM_HeLa_CUDC101_4h_R1 1 LHVGNISPTCTNK 13 0 E9PB51;Q9BWF3;D6R9K7;J3QRR5;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2 E9PB51 RBM4 RNA-binding protein 4 1 0 LHVGNIS(0.987)PT(0.01)CT(0.003)NK 178.68 9.82E-08 68792000 3030.5 2778.5 2757 2796.2 2748.9 2303.7 2451.2 2394.3 2758.3 1604.5 TRUE FALSE FALSE 2675.269384 2864.102292 2906.051759 2910.241122 2546.119124 2259.760761 2545.743605 2666.857434 2644.601707 1594.956363 1.67733077 1.795724547 1.822025873 1.824652505 1.596356605 1.416816669 1.596121163 1.672056676 1.65810286 1 10.63930124 -9.0648972 0.803799619 0.990790171 1.674561744 0.018088408 0.231512631 0.238206856 0.275088057 0.098520409 0.02821864 8.61E-10 9.0648972 0.683771573 SQS(ph)PAASDCSSSSSSASLPSSGR ddPTM_HeLa_CUDC101_4h_R1 9 SQSPAASDCSSSSSSASLPSSGR 23 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 S(0.061)QS(0.939)PAASDCSSSSSSASLPSSGR;S(0.089)QS(0.911)PAASDCSSSSSSASLPSSGR;S(0.126)QS(0.873)PAAS(0.001)DCSSSSSSASLPSSGR;S(0.002)QS(0.543)PAAS(0.455)DCSSSSSSASLPSSGR;S(0.185)QS(0.814)PAAS(0.001)DCSSSSSSASLPSSGR;S(0.004)QS(0.996)PAASDCSSSSSSASLPSSGR;S(0.372)QS(0.628)PAASDCSSSSSSASLPSSGR;S(0.017)QS(0.795)PAAS(0.188)DCSSSSSSASLPSSGR;S(0.051)QS(0.914)PAAS(0.034)DCSSSSSSASLPSSGR ;;;;;;;; 362.9 2.84E-249 1642537100 19618.79 18769.5 18200.01 17676.51 18184.67 15705.73 15137.87 13418.17 19427.9 13802.88 TRUE FALSE FALSE 17319.10518 19347.76605 19183.95759 18397.43448 16843.22312 15406.16937 15721.74272 14945.64023 18627.07374 13720.77986 1.262253703 1.410106878 1.398168165 1.340844666 1.227570393 1.122834819 1.145834485 1.089270464 1.35758127 1 13.74407486 -9.059961268 0.967369486 1.008025822 1.251748078 0 0.150640335 0.427208796 0.754690254 0.066523008 0.022703513 8.71E-10 9.059961268 0.243722257 ELESQISELQEDLESER ddPTM_HeLa_CUDC101_4h_R1 4 ELESQISELQEDLESER 17 0 P35579 P35579 MYH9 Myosin-9 0 0 ;;; ;;; 398.8 0 187281800 7452.38 5541.48 5102.25 5556.7 5693.31 5481.64 5454.32 5652.99 6252.3 7072.85 FALSE FALSE TRUE 6578.823313 5712.206431 5378.093068 5783.326244 5273.325864 5377.08685 5664.694949 6296.503531 5994.577548 7030.780374 0.935717369 0.812456957 0.764935439 0.822572451 0.750034219 0.764792322 0.805699318 0.89556254 0.852619088 1 12.77946911 -7.365040563 2.04695611 0.975716107 0.795969269 0.477582407 0.055813728 0.101298152 0.806517678 0.007921641 0.009040745 4.31E-08 7.365040563 -0.179746838 ELESSEDRLDK ddPTM_HeLa_CUDC101_4h_R1 1 ELESSEDRLDK 11 1 Q86V48-2;Q86V48-3;Q86V48;E5RFK8 Q86V48-2 LUZP1 Leucine zipper protein 1 0 0 114.89 0.0020473 0 1880 1719 1559.5 1673.6 1809.2 1605.2 1384.3 1331.6 1762.3 1349.2 FALSE FALSE TRUE 1659.62925 1771.960352 1643.811287 1741.856642 1675.73892 1574.583484 1437.692915 1483.183961 1689.657248 1341.174898 1.237444312 1.321200057 1.225650204 1.298754282 1.249455923 1.174032922 1.071965272 1.105884075 1.259833636 1 10.38928167 -9.184799006 0.961597936 1.00174792 1.212721001 0 0.107807983 0.373176969 0.628243844 0.052919383 0.015488741 6.53E-10 9.184799006 0.210973081 AVVPSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 AVVPSKR 7 1 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2D6;G3V2Q1;B4DY08;G3V4W0;G3V5V7;G3V576;G3V575;G3V555 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 1 ; AVVPSK(1)R;AVVPSK(1)R 115.46 0.0047857 210205000 2207.1 2177 2347.9 5764 5718.5 6200.2 6897.1 8283 1258.14 856.03 FALSE TRUE FALSE 1948.387084 2244.07079 2474.834576 5999.080834 5296.657648 6081.941515 7163.123457 9225.903239 1206.278937 850.9382955 2.289692559 2.637172168 2.908359618 7.049959869 6.224490866 7.147335532 8.417911728 10.84203554 1.417586849 1 9.732910711 -5.065779105 0.36338429 1.019768461 13.97875705 0.937824644 0.797378615 0.584413421 0.080990326 0.287929557 3.045775753 8.59E-06 5.065779105 12.95898859 up KQNET(ph)S(ph)T(ph)SK ddPTM_HeLa_CUDC101_4h_R1 1 KQNETSTSK 9 1 Q96N64-3;Q96N64-2;Q96N64 Q96N64-3 PWWP2A PWWP domain-containing protein 2A 3 0 KQNET(0.718)S(0.782)T(0.782)S(0.718)K 75.294 0.031659 39972000 8000.5 7430.9 6863.3 6727.1 7413.3 6859.2 6770.5 6793.1 8160.1 4430.6 TRUE FALSE FALSE 7062.693518 7659.837221 7234.350758 7001.460215 6866.435628 6728.372188 7031.640453 7566.399045 7823.737224 4404.246594 1.603609918 1.739193539 1.64258531 1.589706676 1.559048859 1.52770106 1.596559208 1.717978066 1.776407623 1 12.10467953 -9.059014144 0.716378284 0.972058965 1.623032362 0 0.24666143 0.164192378 0.145090849 0.061738261 0.016017334 8.73E-10 9.059014144 0.650973397 HFDPEFTEEPVPNS(ph)IGKSPDSVLVTASVK ddPTM_HeLa_CUDC101_4h_R1 1 HFDPEFTEEPVPNSIGKSPDSVLVTASVK 29 1 O00141-5;E9PR89;O00141-4;O00141;O00141-3;O00141-2 O00141-5 SGK1 Serine/threonine-protein kinase Sgk1 1 0 HFDPEFTEEPVPNS(0.648)IGKS(0.312)PDS(0.038)VLVT(0.002)ASVK 102.78 1.52E-09 18576000 1890 1542.1 1390.5 1555.1 1824.7 1761.2 1639.4 1604.7 2148 2579.7 TRUE FALSE FALSE 1668.457065 1589.610273 1465.674636 1618.5237 1690.095516 1727.608044 1702.632207 1787.372562 2059.458531 2564.35583 0.65063399 0.619886778 0.571556653 0.631161901 0.659072152 0.673700593 0.663960979 0.697006453 0.803109501 1 11.32438075 -9.05889411 0.728177539 1.014128579 0.642036442 0.662932105 0.067283697 0.150983337 0.138655342 0.032667062 0.008602689 8.73E-10 9.05889411 -0.372092137 PKPYDPPGEK(ac)MVAAK ddPTM_HeLa_CUDC101_4h_R1 1 PKPYDPPGEKMVAAK 15 2 P18848 P18848 ATF4 Cyclic AMP-dependent transcription factor ATF-4 0 1 PKPYDPPGEK(1)MVAAK 133.25 0.0072788 1954400 239.74 227.5 237.29 313.85 901.27 3310.5 5468.9 5047.3 517.51 249.54 FALSE TRUE FALSE 211.6380406 234.5090053 250.1186152 326.6501596 834.7851077 3247.357728 5679.837305 5621.86423 496.1780188 248.055725 0.853187487 0.945388402 1.008316237 1.316841849 3.365312805 13.09124282 22.89742478 22.6637149 2.000268362 1 7.954520444 -5.055350124 1.842625766 0.945169694 23.60412618 0.994655534 0.633941191 0.013450552 0.086095512 0.075091162 0.305269413 8.80E-06 5.055350124 22.65895649 up ELFDDPSY(ph)VNVQNLDK ddPTM_HeLa_CUDC101_4h_R1 2 ELFDDPSYVNVQNLDK 16 0 Q5T188;H0Y539;X6R6D0;P29353-5;P29353-3;P29353-2;P29353-7;P29353;P29353-6 Q5T188 SHC1 SHC-transforming protein 1 1 0 ELFDDPS(0.028)Y(0.972)VNVQNLDK;ELFDDPS(0.087)Y(0.913)VNVQNLDK ; 231.52 2.41E-42 136685000 17887.9 11722 12133.1 11946.9 14609.8 7181.1 3407.7 2324.3 13763.8 15937.9 TRUE FALSE FALSE 15791.10748 12083.14093 12789.05209 12434.14622 13532.06416 7044.132482 3539.136131 2588.888917 13196.45034 15843.10066 0.996718244 0.762675261 0.807231637 0.784830349 0.854129785 0.4446183 0.223386584 0.16340797 0.83294619 1 13.95156709 -5.043859904 0.683680942 0.982915583 1.60E-31 0.872414923 0.102328394 0.29072197 0.166263646 0.017512374 0.180869115 9.04E-06 5.043859904 -0.982915583 down SSTETCY(ph)SAIPK ddPTM_HeLa_CUDC101_4h_R1 1 SSTETCYSAIPK 12 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 0 SSTET(0.001)CY(0.716)S(0.284)AIPK 132.88 0.0086275 37761000 5903.2 3848.2 3838.7 3836.1 4785.5 2071.3 901.9 257.15 3674.9 4109.9 TRUE FALSE FALSE 5211.235845 3966.758481 4046.231733 3992.552739 4432.483199 2031.793404 936.6865851 286.4229166 3523.419067 4085.454132 1.275558525 0.970946767 0.990399501 0.977260449 1.084942593 0.497323758 0.229273553 0.070107975 0.86243021 1 11.99628074 -5.036428434 1.63778981 1.103674638 0.078503037 0.887212958 0.125571524 0.086985833 0.428328296 0.019170078 0.087448365 9.20E-06 5.036428434 -1.025171601 down LCNLEEGS(ph)PGSGTYTR ddPTM_HeLa_CUDC101_4h_R1 3 LCNLEEGSPGSGTYTR 16 0 R4GNH9;R4GMQ7;B1AMU7;B1AMU3;B1AMU4;Q9Y3B2 R4GNH9 EXOSC1 Exosome complex component CSL4 1 0 LCNLEEGS(0.658)PGS(0.07)GT(0.256)Y(0.002)T(0.014)R;LCNLEEGS(0.967)PGS(0.032)GT(0.001)YTR;LCNLEEGS(1)PGSGTYTR ;; 170.48 7.21E-07 20487500 3496.51 3223.89 3073.81 2825.18 3746.9 3279.24 2852.28 2603.95 3429.48 1364.34 TRUE FALSE FALSE 3086.654398 3323.21423 3239.989466 2940.403052 3470.498652 3216.693961 2962.293395 2900.373142 3288.115383 1356.224845 2.275916423 2.450341654 2.388976635 2.168079329 2.558940477 2.371799907 2.184219974 2.138563641 2.42446184 1 10.40538066 -9.058726836 0.67291397 0.915780759 2.339327039 0 0.455187109 0.161830496 0.123411424 0.129525358 0.031805918 8.74E-10 9.058726836 1.42354628 DDSHS(ph)AEDS(ph)EDEKEDHK ddPTM_HeLa_CUDC101_4h_R1 1 DDSHSAEDSEDEKEDHK 17 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 DDS(0.096)HS(0.904)AEDS(1)EDEKEDHK 90.017 0.0077993 70751000 13288 7303.8 10510 11030 7899.1 8273.8 8086.3 4373.5 11495 16381 TRUE FALSE FALSE 11730.40078 7528.821421 11078.20239 11479.85108 7316.39913 8115.99105 8398.1913 4871.361562 11021.17123 16283.56508 0.720382835 0.462357069 0.68033028 0.704996174 0.449311873 0.498416103 0.515746475 0.299158172 0.676827905 1 13.99112897 -9.057233311 0.100795874 1.715605862 6.39E-14 0.45227636 0.137950117 8.128451147 0.245398492 2.873070277 1.367042265 8.77E-10 9.057233311 -1.715605862 APS(ph)DSSLGTPS(ph)DGRPELR ddPTM_HeLa_CUDC101_4h_R1 1 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 2 0 APS(0.966)DS(0.243)S(0.169)LGT(0.033)PS(0.589)DGRPELR 70.15 0.021066 176000000 6148.9 4876.6 5996 5608.4 5441.3 3662.3 3039.3 1899 5514.7 5064.3 TRUE FALSE FALSE 5428.135263 5026.842266 6320.161897 5837.134794 5039.90614 3592.447729 3156.526819 2115.174484 5287.381732 5034.177318 1.078256668 0.998542949 1.255450791 1.15950123 1.001137986 0.713611679 0.627019396 0.420162889 1.050297079 1 12.29754032 -5.015098957 1.699131813 1.061767165 0.480811631 0.882947592 0.084378574 0.106202322 0.566826899 0.013642703 0.062073723 9.66E-06 5.015098957 -0.580955534 down SFS(ph)MQDLR ddPTM_HeLa_CUDC101_4h_R1 3 SFSMQDLR 8 0 E5RGS2;Q9H6H4 E5RGS2 REEP4 Receptor expression-enhancing protein;Receptor expression-enhancing protein 4 1 0 S(0.007)FS(0.993)MQDLR;S(0.041)FS(0.959)MQDLR;S(0.002)FS(0.998)MQDLR ;; 107.11 0.012929 51586800 15822.9 13707.5 13784.1 12472.7 12671.9 14171.8 13556.8 13497.2 13662.1 16741.9 TRUE FALSE FALSE 13968.16365 14129.81183 14529.31014 12981.39062 11737.11918 13901.49653 14079.69032 15033.66669 13098.94246 16642.31843 0.83931597 0.849029051 0.873034019 0.780022968 0.705257457 0.835310091 0.846017361 0.903339685 0.787086397 1 14.02256881 -9.056999944 0.528573553 1.024967497 0.818890744 0 0.083139255 0.66956566 0.291310799 0.068799492 0.014180869 8.77E-10 9.056999944 -0.206076754 ELGGLEGDPSPEEDEGIQK ddPTM_HeLa_CUDC101_4h_R1 2 ELGGLEGDPSPEEDEGIQK 19 0 Q9BT09 Q9BT09 CNPY3 Protein canopy homolog 3 0 0 ; ; 257.8 8.04E-70 11572900 3113.7 2751.4 2439.6 2288.8 2627.8 2345.4 2513.2 2884.2 2685.4 2864 FALSE FALSE TRUE 2748.716806 2836.167373 2571.492155 2382.147157 2433.952429 2300.665403 2610.134966 3212.52567 2574.706675 2846.964801 0.965490267 0.99620739 0.903239884 0.836732213 0.85492888 0.808111643 0.91681322 1.128403719 0.904368988 1 11.47520894 -6.752624583 19.77600387 0.984186185 0.898239484 0.07916158 0.086164061 18.25831481 40959.3194 0.013029542 0.018197956 1.77E-07 6.752624583 -0.085946701 ELGITALHIK ddPTM_HeLa_CUDC101_4h_R1 2 ELGITALHIK 10 0 P62263;A0A2R8Y811;E5RH77 P62263 RPS14 40S ribosomal protein S14 0 0 ; ; 101.66 0.0060036 1471220 1603.27 847.6 921.81 951.96 1005.23 1191.63 829.01 764.55 707.75 613.56 FALSE FALSE TRUE 1415.337121 873.7135513 971.6458369 990.7850435 931.0761856 1168.901643 860.9851934 851.5832816 678.5762454 609.9105178 2.320565197 1.432527438 1.593095722 1.624476074 1.52657834 1.916513339 1.411658216 1.396242984 1.112583282 1 9.252453785 TLSEVDY(ph)APAGPAR ddPTM_HeLa_CUDC101_4h_R1 2 TLSEVDYAPAGPAR 14 0 O15357;A0A0A0MTP6;O15357-2;H0YFZ4 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 TLSEVDY(1)APAGPAR;TLSEVDY(1)APAGPAR ; 153.54 0.00080701 35155000 2568.7 1555.29 1509.49 1480.01 1924.56 1109.94 783.87 595.99 1854 2218.4 TRUE FALSE FALSE 2267.60088 1603.206641 1591.097595 1540.371205 1782.589043 1088.769744 814.1041285 663.8350925 1777.577335 2205.204858 1.028294887 0.727010298 0.721519177 0.698516149 0.808355304 0.493727256 0.369173923 0.301031031 0.806082632 1 11.10669697 -5.008445077 0.376751988 1.036099473 1.66E-17 0.763733805 0.112210385 0.87507832 0.126470221 0.03262387 0.376355475 9.81E-06 5.008445077 -1.036099473 down SCQGACGPS(ph)PPDQK ddPTM_HeLa_CUDC101_4h_R1 2 SCQGACGPSPPDQK 14 0 P18754-2 P18754-2 RCC1 Regulator of chromosome condensation 1 0 SCQGACGPS(1)PPDQK;SCQGACGPS(1)PPDQK ; 189.04 3.03E-11 13517100 6183.3 5494.7 6339 5312.2 6395.8 5971.4 5728.7 6024.3 5694.9 898.25 TRUE FALSE FALSE 5458.502947 5663.985194 6681.705514 5528.854477 5923.994576 5857.505494 5949.657878 6710.081961 5460.153812 892.9071691 6.113180783 6.343308006 7.483090904 6.191970083 6.634502199 6.560038599 6.663243486 7.514870743 6.115029648 1 9.802366383 -9.056934425 0.514806203 0.10871096 6.910516257 0.137135146 1.630034869 0.16561487 0.067865492 0.553673526 0.112511047 8.77E-10 9.056934425 6.801805297 SIVECQPDASATPGVGT(ph)ADSPAAPTDSRDDQK ddPTM_HeLa_CUDC101_4h_R1 1 SIVECQPDASATPGVGTADSPAAPTDSRDDQK 32 1 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 SIVECQPDASAT(0.001)PGVGT(0.59)ADS(0.409)PAAPTDSRDDQK 121.72 1.43E-14 14932000 2180.7 2057.7 2042.9 1803.7 1937.8 2109.7 1663.8 1558.9 1748.5 966.48 TRUE FALSE FALSE 1925.081652 2121.095298 2153.345353 1877.262682 1794.852355 2069.460987 1727.973323 1736.358875 1676.42609 960.731334 2.003766905 2.207792359 2.241360594 1.953993396 1.868214652 2.154047562 1.798602026 1.807330326 1.744947865 1 9.907989231 -9.055610931 0.784992912 0.981483183 2.011012743 0.362389759 0.269437095 0.199619397 0.218908769 0.122881653 0.034814845 8.80E-10 9.055610931 1.02952956 ELHINLIPNK(ac)QDR ddPTM_HeLa_CUDC101_4h_R1 1 ELHINLIPNKQDR 13 1 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 1 ELHINLIPNK(1)QDR 102.9 0.01107 1802100 1209.1 692.54 489.5 537.67 1137.1 1264.1 1495 1039.8 980.48 678.5 FALSE TRUE FALSE 1067.371131 713.8763365 515.9638507 559.5985066 1053.218398 1239.989399 1552.662651 1158.166629 940.0641994 674.4642518 1.582546633 1.058434653 0.76499807 0.829693353 1.561562967 1.838480535 2.302068118 1.717165329 1.393793958 1 9.397598169 -5.386166941 2.910216068 1.193656204 2.000479057 0.642577658 0.27855851 0.158637681 2.565364796 0.048359575 0.120346853 4.11E-06 5.386166941 0.806822853 ELHINLIPNKQDR ddPTM_HeLa_CUDC101_4h_R1 1 ELHINLIPNKQDR 13 1 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 86.114 0.011147 27492000 6952.2 5361.7 5345 5801.8 6112.2 5838.6 5493.1 6114.6 5864.6 5367.1 FALSE FALSE TRUE 6137.273655 5526.887622 5633.966868 6038.422482 5661.315183 5727.238433 5704.970707 6810.661348 5622.858706 5335.176251 1.150341313 1.035933465 1.056003889 1.131813121 1.061129927 1.073486266 1.06931251 1.276557892 1.053921828 1 12.38132022 -9.499571638 1.183237445 0.998640379 1.10525832 0.166298854 0.067838727 0.535098783 1.312774563 0.047559211 0.010939973 3.17E-10 9.499571638 0.106617941 ELHIQGNR ddPTM_HeLa_CUDC101_4h_R1 1 ELHIQGNR 8 0 Q15404-2;Q15404 Q15404-2 RSU1 Ras suppressor protein 1 0 0 86.794 0.0019569 0 4527 3453.3 4708.5 5071 4448.2 4040.3 3704.4 2921.8 4372.9 4213.8 FALSE FALSE TRUE 3996.351922 3559.69208 4963.055752 5277.817299 4120.065148 3963.238009 3847.279949 3254.405902 4192.647211 4188.73613 0.954071061 0.849824856 1.18485758 1.260002334 0.983605799 0.946165594 0.918482289 0.776942209 1.000933714 1 12.03229929 -4.352133663 1.518496431 1.003925608 0.719120972 0.313792524 0.112500078 1.034646888 2.484789559 0.017501486 0.416293537 4.44E-05 4.352133663 -0.284804635 VPVNLLNS(ph)PDCDVKTDDSVVPCFMK ddPTM_HeLa_CUDC101_4h_R1 2 VPVNLLNSPDCDVKTDDSVVPCFMK 25 1 P33981-2;P33981 P33981-2 TTK Dual specificity protein kinase TTK 1 0 VPVNLLNS(0.938)PDCDVKT(0.061)DDSVVPCFMK;VPVNLLNS(0.999)PDCDVKT(0.001)DDSVVPCFMK ; 93.73 5.33E-06 15815700 1913.99 1859.54 1585.71 1915.77 2086.8 1658.68 1653.41 728.76 1674.1 566.53 TRUE FALSE FALSE 1689.634994 1916.830223 1671.438279 1993.903381 1932.860921 1627.043443 1717.182578 811.7190927 1605.092889 563.1602544 3.000273866 3.403702957 2.967962079 3.540561263 3.432168564 2.889130456 3.049189932 1.441364312 2.850153002 1 9.137401708 -9.055533372 0.777738936 0.958609495 3.017234633 0.042636908 0.79013572 0.332427897 0.356746193 0.407788173 0.114554739 8.80E-10 9.055533372 2.058625138 ELIEVDDVMEDDSLR ddPTM_HeLa_CUDC101_4h_R1 1 ELIEVDDVMEDDSLR 15 0 H0YI19;F8W1F4;Q9UHW5;Q9UHW5-2;Q9UHW5-3 H0YI19 GPN3 GPN-loop GTPase 3 0 0 249.69 4.20E-55 4904600 1585.5 1137.7 1161.6 1450 1320 1379.8 1239.1 1290.7 1429.2 1134.2 FALSE FALSE TRUE 1399.650093 1172.751188 1224.39961 1509.137267 1222.62623 1353.482614 1286.892502 1437.628071 1370.287771 1127.453728 1.241425753 1.04017678 1.085986572 1.33853588 1.084413665 1.200477306 1.141414916 1.275110486 1.215382713 1 10.13885251 -9.468385836 1.065755062 0.994352655 1.177559055 0 0.109885578 0.478514617 0.922187685 0.069157969 0.015013272 3.40E-10 9.468385836 0.1832064 NHLS(ph)PQQGGATPQVPS(ph)PCCR ddPTM_HeLa_CUDC101_4h_R1 2 NHLSPQQGGATPQVPSPCCR 20 0 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 2 0 NHLS(1)PQQGGAT(0.005)PQVPS(0.995)PCCR;NHLS(1)PQQGGAT(0.001)PQVPS(0.999)PCCR ; 107.29 9.49E-05 12750000 1334.81 903.66 1265.8 1483.35 1481.03 1375.29 1232.14 1117.92 1424.16 508.23 TRUE FALSE FALSE 1178.345595 931.5006935 1334.232977 1543.847425 1371.777368 1349.058635 1279.664053 1245.179494 1365.455522 505.2070254 2.332401444 1.843799961 2.640962833 3.055870855 2.715277695 2.670308541 2.532949837 2.464691565 2.702764319 1 8.980730891 -9.055311039 0.379715564 0.563911104 2.71121387 0 0.58747726 0.651945683 0.139108032 0.576862874 0.110041584 8.80E-10 9.055311039 2.147302766 ES(ph)SPEKEAEEGCPEKESEEGCPK ddPTM_HeLa_CUDC101_4h_R1 2 ESSPEKEAEEGCPEKESEEGCPK 23 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ES(0.497)S(0.497)PEKEAEEGCPEKES(0.005)EEGCPK;ES(0.538)S(0.461)PEKEAEEGCPEKESEEGCPK ; 72.755 0.0013962 24893000 2687.93 2403.43 2586.65 2403.83 2295.16 2533.26 2325.33 2204.78 2603.25 735.9 TRUE FALSE FALSE 2372.85492 2477.47683 2726.492123 2501.868578 2125.850619 2484.942286 2415.018757 2455.763243 2495.942933 731.5228341 3.243719553 3.386738888 3.727145615 3.420082684 2.906061876 3.396944252 3.301357995 3.357056169 3.411982261 1 9.514759088 -9.055224532 0.655063914 0.833108883 3.377380898 0 0.763942165 0.149172144 0.106959715 0.210648193 0.05076967 8.81E-10 9.055224532 2.544272015 VQIPVSRPDPEPVS(ph)DNEEDSYDEEIHDPR ddPTM_HeLa_CUDC101_4h_R1 3 VQIPVSRPDPEPVSDNEEDSYDEEIHDPR 29 1 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2;H0YKB1 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 VQIPVS(0.002)RPDPEPVS(0.523)DNEEDS(0.254)Y(0.22)DEEIHDPR;VQIPVS(0.002)RPDPEPVS(0.546)DNEEDS(0.215)Y(0.237)DEEIHDPR;VQIPVS(0.003)RPDPEPVS(0.855)DNEEDS(0.075)Y(0.067)DEEIHDPR ;; 61.429 0.00083685 139545000 6416.3 5471.2 5415.8 4963.7 6739.7 5406.3 4872.3 5898 6055 6289.5 TRUE FALSE FALSE 5664.19104 5639.761187 5708.59453 5166.141141 6242.525758 5303.183835 5060.226243 6569.404479 5805.410337 6252.089774 0.905967644 0.902060174 0.913069827 0.826306296 0.998470269 0.848225798 0.809365576 1.050753383 0.928555179 1 12.61012278 -9.053692509 0.654300551 1.00691174 0.900555291 0.051067474 0.073179494 1.016578349 0.7274539 0.059955682 0.014463119 8.84E-10 9.053692509 -0.106356449 ELIPTEEALR ddPTM_HeLa_CUDC101_4h_R1 2 ELIPTEEALR 10 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 146.79 0.0038941 8432600 5223.1 4516.1 3614.7 4159.7 4285.3 3920.1 3894.9 3798.9 4010.2 3507 FALSE FALSE TRUE 4610.856136 4655.235688 3810.121616 4329.350546 3969.181957 3845.330624 4045.127598 4231.35142 3844.897859 3486.140208 1.322624984 1.335355267 1.09293413 1.24187505 1.13856062 1.103033841 1.160345642 1.213763982 1.102909702 1 11.76741488 -9.543645798 1.338366795 1.001135908 1.212196673 0.306348789 0.084366187 0.325303131 1.052622669 0.061095788 0.014846565 2.86E-10 9.543645798 0.211060765 ELIQK(ac)ELTIGSK ddPTM_HeLa_CUDC101_4h_R1 1 ELIQKELTIGSK 12 1 R4GN98;P06703 R4GN98 S100A6 Protein S100;Protein S100-A6 0 1 ELIQK(1)ELTIGSK 160.69 2.36E-12 0 0 0 0 0 151.13 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 139.981441 0 0 0 0 0 0 RDS(ph)FDDR ddPTM_HeLa_CUDC101_4h_R1 1 RDSFDDR 7 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 RDS(1)FDDR 77.533 0.026376 5750000 1922.1 736.66 1937.4 2400.3 1119.2 1199.7 1684.2 1094.4 1922.2 3786.4 TRUE FALSE FALSE 1696.794352 759.3556214 2042.141704 2498.194609 1036.638846 1176.817721 1749.160158 1218.982072 1842.966102 3763.878324 0.450810097 0.201748185 0.542563156 0.663728844 0.275417736 0.312660936 0.464722822 0.323863305 0.489645505 1 11.87800428 -9.053358977 0.600989981 1.060254956 0.39449467 0.140128896 0.20323317 0.396771031 0.232669952 0.14067804 0.031718302 8.84E-10 9.053358977 -0.665760286 ELISNSSDALDK ddPTM_HeLa_CUDC101_4h_R1 4 ELISNSSDALDK 12 0 P07900;P07900-2;G3V2J8;Q14568 P07900 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 0 0 ;;; ;;; 195.51 2.28E-15 85753100 6225.44 5464.1 5043.81 5120.85 5324.36 5222.84 4832.61 4813.59 5367.52 5652.7 FALSE FALSE TRUE 5495.70336 5632.442444 5316.493625 5329.700397 4931.59257 5123.223029 5019.005387 5361.549628 5146.268554 5619.077489 0.978043704 1.002378496 0.946150616 0.948500961 0.877651639 0.911755184 0.893208075 0.954169014 0.915856484 1 12.45611758 -6.354434714 1.675614106 0.990344297 0.909515493 0.376142961 0.032209781 0.131165919 0.722069506 0.003439735 0.005963579 4.42E-07 6.354434714 -0.080828804 ELISNSSDALDKIR ddPTM_HeLa_CUDC101_4h_R1 2 ELISNSSDALDKIR 14 1 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ; ; 141.59 0.00059392 39345000 2438.51 2306.36 1863.34 2140.16 2760.2 2238.86 2090.77 2309.33 2174.92 2035.4 FALSE FALSE TRUE 2152.671554 2377.416218 1964.077797 2227.444975 2556.585545 2196.157476 2171.411699 2572.214793 2085.268877 2023.29335 1.063944363 1.175022998 0.970733085 1.100900655 1.26357631 1.085437006 1.073206561 1.271300967 1.030631014 1 10.98248979 -1.000000072 0.092171306 0.910860988 1.694069741 0.335935334 0.079577839 113.3169416 0.754416772 0.834925158 11.27154093 0.099999984 1.000000072 0.783208752 MDDFECVT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 MDDFECVTPK 10 0 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 0 MDDFECVT(1)PK 118.61 0.025024 7367100 1846 1630 1531 1929.6 1918 1794.3 1622.8 842.06 1775.6 632.34 TRUE FALSE FALSE 1629.614678 1680.218368 1613.770491 2008.297428 1776.512961 1760.076717 1685.39194 937.9167067 1702.409016 628.5788136 2.592538347 2.673043271 2.567331982 3.194981099 2.826237415 2.800089152 2.681273857 1.492122684 2.708346161 1 9.295949836 -9.053105133 0.689236204 0.911067607 2.658017661 0 0.665719931 0.358614418 0.290120005 0.355459502 0.089741821 8.85E-10 9.053105133 1.746950054 ELK(ac)ELIQK ddPTM_HeLa_CUDC101_4h_R1 1 ELKELIQK 8 1 R4GN98;P06703 R4GN98 S100A6 Protein S100;Protein S100-A6 0 1 ELK(1)ELIQK 131.44 0.0032319 805480 499.33 466.73 690.26 337.79 689.2 513.69 484.38 635.31 573.16 694.85 FALSE TRUE FALSE 440.7992943 481.1093981 727.5775435 351.5665363 638.3590891 503.8922191 503.0626989 707.6311224 549.5341022 690.7170013 0.638176407 0.696536204 1.053365622 0.508987814 0.924197736 0.72952051 0.728319555 1.024487773 0.795599502 1 9.431950924 -9.562565887 1.354974204 0.999257489 0.766098345 0 0.173689743 0.503868074 1.666305617 0.106104467 0.025315567 2.74E-10 9.562565887 -0.233159143 DLGTES(ph)QIFISR ddPTM_HeLa_CUDC101_4h_R1 1 DLGTESQIFISR 12 0 P50395-2;P50395 P50395-2 GDI2 Rab GDP dissociation inhibitor beta 1 0 DLGT(0.029)ES(0.971)QIFISR 118.52 0.0036305 3330900 994.24 780.29 803.81 822.54 1064.7 658.15 737.87 818.88 765.18 1012.7 TRUE FALSE FALSE 877.6966944 804.32981 847.2664 856.0867365 986.1592022 645.5968853 766.3298931 912.0979892 733.6389565 1006.676415 0.87187569 0.798995385 0.841647214 0.850409052 0.97961886 0.641315199 0.761247489 0.906048831 0.728773363 1 9.975384305 -9.051155357 0.296487618 1.073851245 0.797434777 0 0.120110316 2.720603376 0.364278385 0.266866968 0.055613418 8.89E-10 9.051155357 -0.276416469 S(ph)PCLEPHILK ddPTM_HeLa_CUDC101_4h_R1 1 SPCLEPHILK 10 0 E9PP00;Q9C0D7;Q9C0D7-2 E9PP00 ZC3H12C Probable ribonuclease ZC3H12C 1 0 S(1)PCLEPHILK 71.176 0.040218 5028600 4215.2 4170.8 3782.6 3512.7 4047.4 4113.7 3632 4301.9 4024.9 993.66 TRUE FALSE FALSE 3721.100646 4299.297404 3987.098798 3655.963089 3748.831366 4035.238026 3772.087457 4791.610907 3858.991918 987.7496661 3.767250725 4.352618433 4.036547857 3.701305315 3.795325368 4.085284121 3.818869888 4.851037739 3.906852162 1 9.948001643 -9.050548652 0.559689229 0.621142665 4.119457306 0.031286107 0.952374543 0.214753281 0.106908697 0.385762839 0.082989915 8.90E-10 9.050548652 3.498314641 (ac)S(ph)HPSPQAKPSNPSNPR ddPTM_HeLa_CUDC101_4h_R1 1 SHPSPQAKPSNPSNPR 16 1 Q08752 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D 1 0 S(0.872)HPS(0.124)PQAKPS(0.004)NPSNPR 43.791 0.032889 1514400 773.72 587.36 564.62 678 835.72 660.14 570.2 472.2 684.59 971.45 TRUE FALSE FALSE 683.0257145 605.4558654 595.1450651 705.6517706 774.0706006 647.5489294 592.192805 525.9533393 656.3709104 965.6717722 0.707306286 0.626978941 0.616301607 0.730736665 0.801587685 0.670568353 0.613244398 0.544650216 0.679703942 1 9.915389096 -9.050317685 0.504774141 1.055312119 0.653237747 0.016954366 0.120041946 0.513216536 0.201923268 0.100259648 0.020334062 8.91E-10 9.050317685 -0.402074372 ELLEIVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 ELLEIVKK 8 1 P31153-2;P31153 P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 0 1 ELLEIVK(1)K 109.11 0.0056588 928660 742.96 196.51 283.11 176.55 888.59 725.08 709.98 688.99 577.82 576.25 FALSE TRUE FALSE 655.8713551 202.5642402 298.415783 183.7504721 823.040486 711.2503071 737.3641664 767.4218366 554.002015 572.8224394 1.144981952 0.353624834 0.520956866 0.320780855 1.43681607 1.241659296 1.287247349 1.339720276 0.967144401 1 9.161944199 DLSSS(ph)PPGPYGQEMYAFR ddPTM_HeLa_CUDC101_4h_R1 3 DLSSSPPGPYGQEMYAFR 18 0 O43741;O43741-2 O43741 PRKAB2 5-AMP-activated protein kinase subunit beta-2 1 0 DLS(0.023)S(0.007)S(0.97)PPGPYGQEMYAFR;DLS(0.006)S(0.031)S(0.963)PPGPYGQEMYAFR;DLS(0.027)S(0.142)S(0.809)PPGPY(0.02)GQEMY(0.002)AFR ;; 172.32 2.42E-07 130403000 8451 7851.1 7120.6 6849.1 7881.9 7704.1 6926.5 6986.2 7672.6 5727.2 TRUE FALSE FALSE 7460.386591 8092.983085 7505.561175 7128.435902 7300.46794 7557.157128 7193.657425 7781.480769 7356.33218 5693.13436 1.310418149 1.421533829 1.318353072 1.252110955 1.282328412 1.32741591 1.263567127 1.366818395 1.292140975 1 12.47500743 -9.049602077 0.763962036 0.992044834 1.316650794 0.096826593 0.100438606 0.202069294 0.208468642 0.038755123 0.010784961 8.92E-10 9.049602077 0.32460596 ELLIHER ddPTM_HeLa_CUDC101_4h_R1 1 ELLIHER 7 0 Q96BN8 Q96BN8 OTULIN Ubiquitin thioesterase otulin 0 0 86.833 0.0016525 0 6680.2 6269.9 5549.5 6188.5 6320.7 6349.2 5609.4 5920.8 5774.7 6185.7 FALSE FALSE TRUE 5897.157083 6463.068187 5849.522756 6440.893779 5854.434554 6228.099588 5825.756437 6594.799939 5536.664422 6148.907181 0.959057749 1.051092169 0.951310954 1.047485934 0.952109762 1.012879103 0.947445825 1.072515773 0.900430639 1 12.58611431 ELLPVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 ELLPVKK 7 1 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 1 ELLPVK(1)K 92.925 0.028179 1034700 3276.1 1397.8 1312.2 1228.1 3010.5 2570.3 2891.6 1935.8 2692.9 1862.3 FALSE TRUE FALSE 2892.080524 1440.864561 1383.141501 1278.187226 2788.421413 2521.27581 3003.129981 2156.163647 2581.897522 1851.222957 1.56225403 0.778331187 0.747150145 0.690455583 1.506259094 1.361951461 1.622241108 1.164723914 1.394698306 1 10.85426295 ELLQFK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 ELLQFKK 7 1 Q8IYH5-2;Q8IYH5;Q8IYH5-3 Q8IYH5-2 ZZZ3 ZZ-type zinc finger-containing protein 3 0 1 ; ELLQFK(1)K;ELLQFK(1)K 146.35 0.0010789 3900500 2654.3 2625.9 1424.03 2612 2277.92 2464.4 2702.9 2604.6 1525.48 842.87 FALSE TRUE FALSE 2343.166978 2706.800867 1501.017369 2718.52865 2109.88238 2417.395676 2807.151758 2901.097136 1462.599069 837.8565718 2.796620635 3.230625572 1.791496803 3.244622936 2.518190405 2.885214197 3.350396539 3.462522386 1.745643727 1 9.710559487 -9.641246312 0.346237815 4.23E-15 3.088251615 0.595864085 0.500180495 1.517889298 0.193539537 1.845831317 0.186729323 2.28E-10 9.641246312 3.088251615 EVSSLEGS(ph)PPPCLGQEEAVCTK ddPTM_HeLa_CUDC101_4h_R1 2 EVSSLEGSPPPCLGQEEAVCTK 22 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 EVS(0.007)S(0.034)LEGS(0.959)PPPCLGQEEAVCTK;EVS(0.001)S(0.006)LEGS(0.993)PPPCLGQEEAVCTK ; 188.73 7.28E-14 46978000 8965.2 8639.5 8495.3 8109 9277.4 9235.7 8678.7 9004.2 9636.4 2357.4 TRUE FALSE FALSE 7914.312846 8905.672755 8954.581615 8439.72007 8593.024685 9059.54441 9013.440366 10029.20173 9239.183513 2343.37808 3.377309412 3.800356772 3.821227864 3.60151874 3.66693909 3.866019098 3.846344917 4.279805217 3.94267728 1 11.19437402 -9.04687508 0.444535749 0.399918306 3.956752038 0 0.931860603 0.181825732 0.054168431 0.292384254 0.056874378 8.98E-10 9.04687508 3.556833732 ELLSPLS(ph)EPDDRYPLIVK ddPTM_HeLa_CUDC101_4h_R1 2 ELLSPLSEPDDRYPLIVK 18 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 ELLS(0.017)PLS(0.983)EPDDRYPLIVK;ELLSPLS(0.996)EPDDRY(0.004)PLIVK ; 110.64 0.00026035 235200000 6293.5 5706.9 5607.6 5105.4 5857.9 5649.4 5113.5 4859.6 5262.4 4904.4 TRUE FALSE FALSE 5555.78547 5882.722825 5910.763818 5313.620279 5425.774388 5541.647108 5310.729408 5412.797221 5045.481645 4875.228411 1.139594908 1.206655838 1.212407567 1.089922324 1.112927217 1.136694867 1.089329353 1.110265359 1.034922104 1 12.2512541 -9.045654105 0.910055071 1.002765997 1.1368018 0.561554875 0.041818861 0.317542021 0.490798315 0.026591384 0.00873449 9.00E-10 9.045654105 0.134035803 ELLTTMGDR ddPTM_HeLa_CUDC101_4h_R1 2 ELLTTMGDR 9 0 P24844;P24844-2;J3QRS3;P19105;O14950 P24844;J3QRS3 MYL9;MYL12A;MYL12B Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 0 ; ; 138.1 0.011736 19854900 4143.8 3854.5 3626 3516.8 4000.5 3748.4 3618 3120.6 4407.7 4029.8 FALSE FALSE TRUE 3658.070046 3973.252576 3822.032528 3660.230305 3705.391085 3676.905515 3757.547472 3475.83649 4226.01274 4005.83057 0.913186412 0.991867356 0.95411737 0.913725691 0.924999453 0.917888426 0.938019571 0.867694334 1.054965423 1 11.96788569 -13.52287875 0.19676683 1.331679544 0.911511197 0.581589775 0.033284111 34.29220192 0.412937836 4.399444674 0.03168815 3.00E-14 13.52287875 -0.420168348 S(ph)MGYDDLDYGMMSDYGTAR ddPTM_HeLa_CUDC101_4h_R1 4 SMGYDDLDYGMMSDYGTAR 19 0 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-19;O60716-4;O60716-6;O60716-11;O60716-13;O60716-21;O60716-24;O60716-9;O60716-17;O60716-16;O60716-10;O60716-23;O60716-15;O60716-18;O60716-12;O60716-22;O60716-20;O60716-14 O60716-5 CTNND1 Catenin delta-1 1 0 S(0.998)MGY(0.002)DDLDYGMMSDYGTAR;S(0.88)MGY(0.004)DDLDY(0.11)GMMS(0.007)DYGTAR;S(0.978)MGY(0.022)DDLDYGMMSDYGTAR;S(0.997)MGY(0.001)DDLDY(0.001)GMMSDYGTAR ;;; 228.26 9.65E-34 150057200 5931.5 4707.8 4147.69 4562.46 4797.44 4563.05 4272.95 4743.39 4960.8 11283.48 TRUE FALSE FALSE 5236.218562 4852.841738 4371.926667 4748.536839 4443.542409 4476.017424 4437.759113 5283.358344 4756.313724 11216.36536 0.466837375 0.432657245 0.38978105 0.423357896 0.396165983 0.399061307 0.395650371 0.471040143 0.424051248 1 13.45331763 -9.045464206 0.557203643 1.072000811 0.400718829 0 0.179179493 0.098313625 0.048576848 0.033783762 0.007291514 9.01E-10 9.045464206 -0.671281982 ELLTTMGDRFTDEEVDELYR ddPTM_HeLa_CUDC101_4h_R1 2 ELLTTMGDRFTDEEVDELYR 20 1 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 0 ; ; 182.91 1.53E-11 31801000 1543.06 2138.3 2031.37 1679.46 3114 2452.79 2378.45 3311 2509.19 1611.6 FALSE FALSE TRUE 1362.184846 2204.178488 2141.192007 1747.955638 2884.286424 2406.007117 2470.187613 3687.910856 2405.760126 1602.014132 0.85029515 1.375879554 1.336562496 1.091098764 1.800412598 1.501863854 1.541926232 2.302046395 1.501709678 1 10.64567116 -1 0.258531727 0.883482 9.426616378 0.494804521 0.281448786 16.58602234 0.208621307 0.111752603 63.08832868 0.1 1 8.543134378 SVCPGGS(ph)SPGSSSGGGR ddPTM_HeLa_CUDC101_4h_R1 3 SVCPGGSSPGSSSGGGR 17 0 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 1 0 SVCPGGS(0.496)S(0.496)PGS(0.007)SS(0.001)GGGR;SVCPGGS(0.375)S(0.375)PGS(0.193)S(0.056)S(0.001)GGGR;SVCPGGS(0.498)S(0.498)PGS(0.005)SSGGGR ;; 228.49 2.81E-33 105605600 7941.73 6934.89 7225.35 6746.27 7411.45 6697.6 6797.92 6432.62 7482.19 5323.37 TRUE FALSE FALSE 7010.812448 7148.545741 7615.974276 7021.41205 6864.722099 6569.854439 7060.118052 7164.883459 7173.770961 5291.706358 1.324868005 1.350896149 1.439228438 1.326871065 1.297260587 1.241537983 1.33418553 1.353983569 1.355663084 1 12.36951729 -9.045388535 0.729858174 0.987901143 1.33490423 0 0.11823015 0.211874921 0.19676464 0.042627649 0.011434436 9.01E-10 9.045388535 0.347003086 LFEES(ph)DDKEDEDADGKEVEDADEK ddPTM_HeLa_CUDC101_4h_R1 1 LFEESDDKEDEDADGKEVEDADEK 24 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 LFEES(1)DDKEDEDADGKEVEDADEK 80.733 7.93E-05 29468000 943.15 783.22 776.87 682.52 450.7 720.24 705.87 640.35 835.95 1499.2 TRUE FALSE FALSE 832.5953867 807.3500799 818.8699421 710.3561157 417.4527589 706.502622 733.0956424 713.2448556 801.4917872 1490.282692 0.558682853 0.541742908 0.549472893 0.476658636 0.280116491 0.47407289 0.491917169 0.47859702 0.537811914 1 10.54137031 -9.045360689 0.396283335 1.137583343 0.430131335 0.163161277 0.156857597 0.437663573 0.102455788 0.13085995 0.025179174 9.01E-10 9.045360689 -0.707452008 ELNITAAK ddPTM_HeLa_CUDC101_4h_R1 1 ELNITAAK 8 0 A0A2R8Y623;P62081;B5MCP9 A0A2R8Y623 RPS7 40S ribosomal protein S7 0 0 133.57 0.031397 2052600 2311.2 1970.4 1830.8 2040.8 2188.5 2199.1 2286.9 2310 2167.3 2058.7 FALSE FALSE TRUE 2040.28464 2031.105689 1929.778586 2124.032645 2027.058715 2157.155831 2375.106499 2572.961063 2077.962977 2046.454761 0.996984971 0.992499677 0.942986194 1.037908429 0.990522123 1.054094072 1.160595653 1.257277274 1.015396488 1 10.99891106 -4.58822135 1.432702737 0.99544185 1.290778232 0.935572496 0.02268788 0.103295143 0.286814711 0.002985951 0.036562808 2.58E-05 4.58822135 0.295336382 ELNQVMEQLGDAR ddPTM_HeLa_CUDC101_4h_R1 1 ELNQVMEQLGDAR 13 0 Q14683;G8JLG1 Q14683 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein 0 0 104.07 0.0032809 0 653.76 564.98 429.13 627.56 573.84 705.89 569.9 582.9 790.46 1079 FALSE FALSE TRUE 577.1272438 582.3863641 452.3300658 653.1546093 531.5089665 692.4263243 591.8812339 649.2549798 757.8769042 1072.58206 0.538072811 0.542976044 0.421720708 0.608955374 0.495541541 0.645569556 0.551828392 0.605319634 0.706591069 1 10.06687231 -9.13080905 0.753492731 1.020338055 0.547481143 0.492191971 0.106722204 0.181020138 0.174670527 0.051535959 0.012811496 7.40E-10 9.13080905 -0.472856912 AGAEDDEEKGEGT(ph)PREEGK ddPTM_HeLa_CUDC101_4h_R1 1 AGAEDDEEKGEGTPREEGK 19 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 AGAEDDEEKGEGT(1)PREEGK 97.129 0.0055407 5415300 1299.4 1027.9 1022.1 1263.5 1003.6 1173.3 994.03 1290.8 1116.4 1588.8 TRUE FALSE FALSE 1147.086302 1059.568381 1077.357818 1315.030991 929.5664275 1150.921257 1032.37007 1437.739454 1070.381519 1579.349747 0.7263029 0.670889005 0.682152778 0.832640771 0.588575412 0.728731087 0.653667797 0.910336331 0.677735582 1 10.62511498 -9.045095596 0.719480705 1.011476262 0.716294576 0 0.131305193 0.384522821 0.345350225 0.065427901 0.017330472 9.01E-10 9.045095596 -0.295181686 STSGPRPGCQPSS(ph)PCVPK ddPTM_HeLa_CUDC101_4h_R1 2 STSGPRPGCQPSSPCVPK 18 1 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 STSGPRPGCQPS(0.095)S(0.905)PCVPK;STSGPRPGCQPS(0.026)S(0.974)PCVPK ; 76.693 0.0071096 50109000 6220.9 5763.7 5672.1 6093.2 6588.6 6033.3 5048.1 3006.4 5525.7 1053.65 TRUE FALSE FALSE 5491.695532 5941.272765 5978.750883 6341.707033 6102.572104 5918.224855 5242.806908 3348.636424 5297.928307 1047.382843 5.243255195 5.672493879 5.708276514 6.05481279 5.826496152 5.650488639 5.005626112 3.197146532 5.058253859 1 10.03257316 -9.041686378 0.718919027 0.827006984 5.394998528 0.051597407 1.452161791 0.248563992 0.22316176 0.653687678 0.173738083 9.08E-10 9.041686378 4.567991544 LLVDVDEST(ph)LSPEEQKER ddPTM_HeLa_CUDC101_4h_R1 1 LLVDVDESTLSPEEQKER 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 LLVDVDES(0.088)T(0.895)LS(0.017)PEEQKER 68.134 0.024687 14126000 2165.2 1632.4 1630.7 1708.5 2410.8 1909.6 1978.6 1881.3 2061.6 2557.6 TRUE FALSE FALSE 1911.398538 1682.692309 1718.860575 1778.180015 2232.960087 1873.177562 2054.915265 2095.459588 1976.619975 2542.387281 0.7518125 0.661855226 0.67608133 0.699413511 0.87829266 0.736779001 0.808262093 0.824209436 0.77746612 1 11.3119681 -9.041657309 0.86721286 0.997638581 0.753937578 0.09318962 0.092676099 0.292200423 0.405249149 0.043799802 0.013832816 9.09E-10 9.041657309 -0.243701003 QLLHLCLQDGGS(ph)PPGPGDLAEER ddPTM_HeLa_CUDC101_4h_R1 2 QLLHLCLQDGGSPPGPGDLAEER 23 0 Q96FS4;F6RY50 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 1 0 QLLHLCLQDGGS(1)PPGPGDLAEER;QLLHLCLQDGGS(1)PPGPGDLAEER ; 161.2 4.64E-08 41268000 2845.2 2396.26 2810.3 2512.75 2569.2 2829.6 1983.33 2471.23 3012.3 1351.74 TRUE FALSE FALSE 2511.689969 2470.08593 2962.233319 2615.230806 2379.675235 2775.630094 2059.827702 2752.544834 2888.131719 1343.69979 1.869234473 1.838272171 2.204535075 1.946290998 1.770987278 2.065662371 1.532952314 2.048482 2.149387638 1 10.39199513 -9.040611448 0.672560676 0.946405445 1.917338773 0 0.393438453 0.27619085 0.212164511 0.150084777 0.03765767 9.11E-10 9.040611448 0.970933328 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR ddPTM_HeLa_CUDC101_4h_R1 1 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 0 0 71.425 2.20E-06 7799700 1501.3 1007.6 791.3 808.8 1453.7 1203.1 968.74 744.91 1513.9 1216.9 FALSE FALSE TRUE 1325.31989 1038.642962 834.0800716 841.7863599 1346.463447 1180.152872 1006.104626 829.7075434 1451.496401 1209.661825 1.0956119 0.858622584 0.689515081 0.695885695 1.113090799 0.975605618 0.83172388 0.685900412 1.199919161 1 10.24038807 -7.219718328 7.787356306 1.04511964 0.840286727 0.418936352 0.137503641 0.251359238 42.38964938 0.022779328 0.027820949 6.03E-08 7.219718328 -0.204832913 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_HeLa_CUDC101_4h_R1 1 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK 44 2 Q01105-2 Q01105-2 SET Protein SET 0 0 70.178 1.94E-08 6625000 2023.5 1136.8 1334.1 1110.9 2177.3 1455.4 1568.6 1272.8 1671.7 1586.7 FALSE FALSE TRUE 1786.308397 1171.823461 1406.225481 1156.207304 2016.684917 1427.64067 1629.101427 1417.690407 1602.791818 1577.262238 1.132537351 0.742947769 0.891560989 0.73304697 1.278598364 0.905138433 1.032866564 0.898829867 1.016186009 1 10.62320683 ERDSELSDT(ph)DSGCCLGQSESDK ddPTM_HeLa_CUDC101_4h_R1 1 ERDSELSDTDSGCCLGQSESDK 22 1 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 1 0 ERDS(0.027)ELS(0.071)DT(0.804)DS(0.097)GCCLGQSESDK 75.718 0.0024592 28909000 2061.6 1798.1 2059.7 1843.4 1764.5 2015.4 1726.1 1446.1 2405.5 777.29 TRUE FALSE FALSE 1819.942373 1853.49733 2171.053612 1918.58182 1634.33635 1976.959603 1792.676255 1610.718179 2306.344272 772.6666445 2.355404347 2.398831816 2.809819251 2.483065412 2.11518947 2.558619059 2.320116014 2.084622379 2.984915019 1 9.593702309 -9.039733674 0.704214633 0.936490197 2.413429105 0 0.642338603 0.208995893 0.178914714 0.176124196 0.046059689 9.13E-10 9.039733674 1.476938908 RS(ph)CFESSPDPELK ddPTM_HeLa_CUDC101_4h_R1 1 RSCFESSPDPELK 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RS(0.943)CFES(0.041)S(0.016)PDPELK 99.069 0.0054797 6966200 2479.7 2159.5 2261.7 2016.5 2720.4 2460.8 2366.3 2022.2 2672.8 1655.2 TRUE FALSE FALSE 2189.033325 2226.031635 2383.974343 2098.741586 2519.721512 2413.86434 2457.568984 2252.399074 2562.626053 1645.354797 1.330432396 1.35291892 1.448912021 1.275555637 1.531415301 1.467078313 1.493640757 1.368944302 1.557491465 1 10.684183 -9.038831065 0.334049825 0.855477019 1.470736521 0 0.186856331 0.681977775 0.11441056 0.160096335 0.032022428 9.14E-10 9.038831065 0.615259502 AGCFS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 AGCFSPK 7 0 Q6P4F7-3;Q6P4F7;H3BQ41;H3BR51;Q6P4F7-2 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 AGCFS(1)PK 108.98 0.014414 30800000 5717.3 5386.2 5623.8 5758.1 5730.5 5567.2 4087.6 1768.1 7143.5 2951.7 TRUE FALSE FALSE 5047.126761 5552.142438 5927.839639 5992.940207 5307.772432 5461.014936 4245.260101 1969.373357 6849.041906 2934.143157 1.720136507 1.892253425 2.020296666 2.042483916 1.808968461 1.861195805 1.446848321 0.671191981 2.334256217 1 11.51872355 -9.038806635 0.883278295 1.010677703 1.710637914 0 0.556699083 0.551445004 0.798108777 0.238459499 0.076834209 9.15E-10 9.038806635 0.699960211 EEADALY(ph)EALK ddPTM_HeLa_CUDC101_4h_R1 1 EEADALYEALK 11 0 Q9BPW4-3;Q9BPW4-2;Q9BPW4 Q9BPW4-3 APOL4 Apolipoprotein L4 1 0 EEADALY(1)EALK 113.18 0.035622 13103000 665.16 656.93 386.56 470.75 700.06 717.17 545.93 458.69 700.66 824.39 TRUE FALSE FALSE 587.1909531 677.1692346 407.4586029 489.9492198 648.4179685 703.4911771 566.986703 510.9054155 671.7784982 819.4864916 0.716535244 0.826333614 0.497212104 0.597873455 0.791249124 0.858453659 0.691880475 0.623445805 0.819755426 1 9.678576358 -9.038513029 0.626703635 1.023692369 0.696119953 0.30034509 0.116389571 0.594557613 0.387444195 0.105527415 0.025028193 9.15E-10 9.038513029 -0.327572416 HEDGTQS(ph)DSEDPLAK ddPTM_HeLa_CUDC101_4h_R1 2 HEDGTQSDSEDPLAK 15 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 HEDGTQS(1)DSEDPLAK;HEDGT(0.011)QS(0.988)DS(0.002)EDPLAK ; 171.25 4.32E-07 22715000 11511.5 9305.6 9770.2 9837.2 10474.9 9728.8 9467.2 9617.8 9976.6 12634.3 TRUE FALSE FALSE 10162.13942 9592.294506 10298.40657 10238.40354 9702.187496 9543.239349 9832.353075 10712.65148 9565.360325 12559.15062 0.809142252 0.763769366 0.819992281 0.815214647 0.772519399 0.759863436 0.782883602 0.852975794 0.76162478 1 13.61645128 -9.038150243 0.608778888 1.018853279 0.790710857 0 0.078548239 0.238408054 0.145204172 0.02906592 0.006741285 9.16E-10 9.038150243 -0.228142422 ESSIIAPAPAEDVDT(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 3 ESSIIAPAPAEDVDTPPR 18 0 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 ESSIIAPAPAEDVDT(1)PPR;ESSIIAPAPAEDVDT(1)PPR;ESSIIAPAPAEDVDT(1)PPR ;; 232.84 5.65E-43 180701000 18723.4 15993 14411.4 14835.1 15521.3 15636.5 13418.1 13177.7 16875.2 20654.8 TRUE FALSE FALSE 16528.67143 16485.72537 15190.52388 15440.1395 14376.32462 15338.25981 13935.64061 14677.7961 16179.59711 20531.94433 0.805022221 0.802930551 0.739848289 0.752005716 0.700193045 0.747043707 0.67872971 0.714876091 0.788020699 1 14.32558263 -9.037569042 0.256669231 1.131990519 0.676096868 0.347401805 0.069236432 0.476501198 0.050297208 0.070820702 0.016374897 9.17E-10 9.037569042 -0.455893652 S(ph)LPVSICR ddPTM_HeLa_CUDC101_4h_R1 2 SLPVSICR 8 0 O94885;A0A087WW74 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 0 S(1)LPVSICR;S(0.997)LPVS(0.003)ICR ; 99.013 0.019747 29690500 4106.9 3945.1 3578.1 3739.2 3824.9 3842 3021.2 2835.73 3669.3 2333.87 TRUE FALSE FALSE 3625.495408 4066.643855 3771.542909 3891.700738 3542.744747 3768.720251 3137.728696 3158.538041 3518.049901 2319.988037 1.562721596 1.752872769 1.625673429 1.677465864 1.527053024 1.62445676 1.352476239 1.361445831 1.516408638 1 11.17990165 -9.036065663 0.830987973 1.000048389 1.564781419 0.087360278 0.196391869 0.257097691 0.323947755 0.08794233 0.02687893 9.20E-10 9.036065663 0.56473303 ELPSGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 ELPSGKK 7 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 1 ELPSGK(1)K 98.997 0.020061 44058000 5547.7 6324.2 7237.9 6142 8388.2 5262.4 5009.4 3967.9 9097.8 8415.5 FALSE TRUE FALSE 4897.407016 6519.041106 7629.202767 6392.497308 7769.419198 5162.028488 5202.614236 4419.589697 8722.784833 8365.444232 0.585432988 0.779282119 0.911990153 0.764155152 0.928751538 0.617065675 0.62191727 0.528315003 1.042716273 1 13.03022644 -9.500919549 1.217287915 1.001781231 0.71209486 0.468518422 0.128341561 0.406597197 1.067607799 0.099244932 0.02345253 3.16E-10 9.500919549 -0.289686371 NSSLGS(ph)PS(ph)NLCGSPPGSIR ddPTM_HeLa_CUDC101_4h_R1 1 NSSLGSPSNLCGSPPGSIR 19 0 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 2 0 NS(0.003)S(0.039)LGS(0.969)PS(0.903)NLCGS(0.08)PPGS(0.007)IR 115.91 0.0012995 29112000 2545.7 2447.1 1950.1 2139.8 2444 2392.6 2393.5 1893.7 2494.6 1711 TRUE FALSE FALSE 2247.296905 2522.49225 2055.528305 2227.070293 2263.710989 2346.965141 2485.818097 2109.271153 2391.771532 1700.822896 1.321299772 1.483101066 1.208549291 1.309407522 1.330950444 1.379899781 1.461538472 1.240147436 1.406243729 1 10.73201721 -9.035211651 0.631034548 0.972096369 1.350846307 0 0.149600201 0.376194833 0.249537927 0.077397432 0.018532336 9.22E-10 9.035211651 0.378749938 MAAAGGTVSGPS(ph)SACKPGR ddPTM_HeLa_CUDC101_4h_R1 2 MAAAGGTVSGPSSACKPGR 19 1 A0A087X2H1;Q9ULT8;G3V4V5;A0A087WVU6 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 0 MAAAGGTVS(0.001)GPS(0.898)S(0.101)ACKPGR;MAAAGGT(0.005)VS(0.001)GPS(0.88)S(0.115)ACKPGR ; 132.01 2.31E-05 30257000 4264.5 3794.8 3880.7 3843.1 4163.9 4054.6 3688.7 2287.86 4091.8 2514.5 TRUE FALSE FALSE 3764.621775 3911.71329 4090.50238 3999.838229 3856.737393 3977.26526 3830.974395 2548.300735 3923.134272 2499.543642 1.506123642 1.564970991 1.636499684 1.600227402 1.542976617 1.591196566 1.532669536 1.019506398 1.569540218 1 11.287449 -9.034356779 0.775812631 0.991309132 1.515582652 0 0.240323666 0.382181416 0.411110065 0.118490228 0.034058107 9.24E-10 9.034356779 0.524273521 PVS(ph)SAASVYAGAGGSGSR ddPTM_HeLa_CUDC101_4h_R1 1 PVSSAASVYAGAGGSGSR 18 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 PVS(0.464)S(0.29)AAS(0.246)VYAGAGGSGSR 186.96 2.76E-11 121130000 2541.2 2632 1881.5 2062.2 2047.1 1961.5 2230.1 2652.2 1859.4 2491.7 TRUE FALSE FALSE 2243.324388 2713.0888 1983.219581 2146.30543 1896.089511 1924.087656 2316.115704 2954.115727 1782.754745 2476.879258 0.905705993 1.095365788 0.800692878 0.866536156 0.765515519 0.776819318 0.935094311 1.192676518 0.719758438 1 11.27430783 -9.033419342 0.499075581 1.01250191 0.900889163 0 0.156048179 3.338632945 1.292797559 0.179606845 0.036967336 9.26E-10 9.033419342 -0.111612748 YSDVEVPASVTGYSFASDGDSGTCS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 2 YSDVEVPASVTGYSFASDGDSGTCSPLR 28 0 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;P35611-5 E7EV99 ADD1 Alpha-adducin 1 0 YSDVEVPASVTGYSFASDGDS(0.006)GT(0.031)CS(0.963)PLR;YSDVEVPASVTGY(0.001)S(0.005)FAS(0.008)DGDS(0.021)GT(0.007)CS(0.957)PLR ; 118.68 1.71E-13 40813000 19235.3 17379 17271.8 16813.8 20201.4 17074.9 15332.1 11398.8 19954.3 14096.7 TRUE FALSE FALSE 16980.56729 17914.42639 18205.56575 17499.53944 18711.18297 16749.22473 15923.46423 12696.39332 19131.77531 14012.8522 1.211785227 1.27842827 1.299204865 1.248820667 1.335287256 1.195275915 1.136347119 0.906053467 1.365302012 1 13.77446301 -9.033291413 0.892160362 1.003808912 1.209291494 0 0.159025909 0.552043133 0.818591847 0.070132369 0.022947225 9.26E-10 9.033291413 0.205482581 ESS(ph)PEKEAEEGCPEKESEEGCPKR ddPTM_HeLa_CUDC101_4h_R1 2 ESSPEKEAEEGCPEKESEEGCPKR 24 3 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ES(0.107)S(0.893)PEKEAEEGCPEKESEEGCPKR;ES(0.096)S(0.902)PEKEAEEGCPEKES(0.001)EEGCPKR ; 57.051 0.0058078 101535000 6181.5 5891.1 5784 5715.6 5637.2 5599.7 5256.3 5929.2 6380 875.52 TRUE FALSE FALSE 5456.913941 6072.597808 6096.700536 5948.706873 5221.354987 5492.895052 5459.037252 6604.156161 6117.0137 870.3123681 6.270063647 6.977492256 7.005186596 6.835139992 5.999403408 6.311406403 6.272503358 7.588259576 7.028526681 1 9.765389488 -9.033188921 0.622648291 0.531970993 6.740762336 0 1.905125654 0.149417628 0.096157679 0.500592458 0.11887653 9.26E-10 9.033188921 6.208791342 ELQELVQYPVEHPDK ddPTM_HeLa_CUDC101_4h_R1 2 ELQELVQYPVEHPDK 15 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 179.66 7.48E-08 42426000 9745.1 8500.8 8355.6 7908.5 7761.3 7649.8 7228.9 7240.2 8378.5 8949.6 FALSE FALSE TRUE 8602.794151 8762.699572 8807.32901 8231.042813 7188.764362 7503.89281 7507.721095 8064.395102 8033.134684 8896.367381 0.967000775 0.984975012 0.989991604 0.925213906 0.808056149 0.843478297 0.843908617 0.906481798 0.902967958 1 13.11900065 -5.992886159 3.919719814 0.983985694 0.849817956 0.707264631 0.035200954 0.055787344 1.940977369 0.003799243 0.006865455 1.02E-06 5.992886159 -0.134167738 TAHNSEADLEES(ph)FNEHELEPSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 TAHNSEADLEESFNEHELEPSSPK 24 0 Q8IWS0-5;Q8IWS0 Q8IWS0-5 PHF6 PHD finger protein 6 2 0 TAHNSEADLEES(1)FNEHELEPS(0.332)S(0.669)PK 69.523 0.00048156 5517100 3552.8 2933.9 2889.7 2636 4146.8 3140.7 2902.6 2685.2 3770.4 3799.6 TRUE FALSE FALSE 3136.34617 3024.289981 3045.925923 2743.507474 3840.898826 3080.79638 3014.554254 2990.872314 3614.982516 3776.99981 0.830380283 0.800712241 0.806440581 0.72637215 1.016917929 0.815672898 0.798134606 0.791864566 0.957104236 1 11.883025 -9.032551744 0.721650515 1.006564768 0.823216922 0.424602485 0.071515743 0.523133134 0.475715861 0.055163848 0.014873839 9.28E-10 9.032551744 -0.183347846 LLSTCGLVQSVELQEKPDLAES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 LLSTCGLVQSVELQEKPDLAESPK 24 1 Q9Y3A4 Q9Y3A4 RRP7A Ribosomal RNA-processing protein 7 homolog A 1 0 LLSTCGLVQSVELQEKPDLAES(1)PK 82.904 4.46E-05 14355000 1087.5 1142.8 890.25 798.66 1001.1 1231 867.19 573.12 867.25 845.9 TRUE FALSE FALSE 960.0248985 1178.008313 938.3796079 831.2328069 927.2508475 1207.520726 900.6378088 638.3616642 831.5015879 840.8685492 1.141706274 1.400942293 1.115964688 0.988540727 1.102729848 1.436039827 1.071080384 0.759169391 0.988860374 1 9.715736475 -9.030878329 1.080408671 1.007944405 1.136189043 0.074069857 0.181879817 1.05047982 2.377843326 0.087213895 0.033688139 9.31E-10 9.030878329 0.128244639 AEEKENDTVTIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 AEEKENDTVTISPK 14 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 AEEKENDTVT(0.019)IS(0.981)PK;AEEKENDTVT(0.116)IS(0.884)PK;AEEKENDT(0.011)VT(0.136)IS(0.853)PK ;; 101.08 0.0040082 214405000 13985.2 11623.9 11340.8 12607.5 12605.2 12022.5 11864 12383 13721.5 13600.9 TRUE FALSE FALSE 12345.87606 11982.01858 11953.91795 13121.68834 11675.33951 11793.19084 12321.59845 13792.63067 13155.89396 13520.00124 0.913156429 0.886243896 0.884165448 0.97053899 0.863560535 0.872277349 0.911360749 1.020164896 0.973068991 1 13.72280766 -9.03029187 0.808585574 1.000520878 0.911988513 0.268508614 0.045992451 0.568338874 0.673787388 0.030144171 0.009044705 9.33E-10 9.03029187 -0.088532365 LCPSCPASS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 LCPSCPASSPK 11 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 LCPSCPAS(0.146)S(0.854)PK;LCPSCPAS(0.066)S(0.934)PK;LCPSCPAS(0.008)S(0.992)PK ;; 140.39 0.0013924 122728000 16845 16095.2 15870.1 15429.3 16568.4 13801.1 14074.7 15944.1 15406.4 2040.65 TRUE FALSE FALSE 14870.45464 16591.07403 16728.08561 16058.57355 15346.18214 13537.86701 14617.56589 17759.1119 14771.34167 2028.512123 7.330720121 8.17893758 8.246480472 7.916429664 7.565240536 6.673791523 7.206053012 8.754747726 7.281860189 1 10.98620621 -9.03028573 0.649500586 0.539651787 7.808368893 0.080776711 2.000055149 0.152908911 0.108769713 0.611077048 0.150719082 9.33E-10 9.03028573 7.268717106 FDSPDLLLEAGDPATS(ph)PCR ddPTM_HeLa_CUDC101_4h_R1 1 FDSPDLLLEAGDPATSPCR 19 0 A0A096LNM2;Q969U6-2;Q969U6 A0A096LNM2 FBXW5 F-box/WD repeat-containing protein 5 1 0 FDSPDLLLEAGDPAT(0.227)S(0.773)PCR 248.01 2.00E-73 0 1962.9 1766.9 1793.1 1666.9 2114.3 1900.3 1828.3 1630.3 2106.9 882.5 TRUE FALSE FALSE 1732.811838 1821.336095 1890.04041 1734.883387 1958.332301 1864.054944 1898.818143 1815.886762 2020.05269 877.2508508 1.975275186 2.076186182 2.154503935 1.977636597 2.232351556 2.124882458 2.164509891 2.069974353 2.302708158 1 9.776845632 -9.028949379 0.500981224 0.823275802 2.151979152 0 0.409566222 0.136667122 0.053509069 0.087666311 0.018172282 9.36E-10 9.028949379 1.32870335 CIACQAAKLS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 CIACQAAKLSPR 12 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 CIACQAAKLS(1)PR;CIACQAAKLS(1)PR ; 86.738 0.014466 92673000 5264.3 5074.5 4136.6 5291.4 6218.7 5685.2 5258.7 5053.9 5771.8 2697.1 TRUE FALSE FALSE 4647.226734 5230.83933 4360.237109 5507.206163 5759.95889 5576.764282 5461.529821 5629.215547 5533.883961 2681.057529 1.733355843 1.951035841 1.626312401 2.054117117 2.148390636 2.080061402 2.037080429 2.099625049 2.064067593 1 11.38858646 -9.028829991 0.27209297 0.544699449 2.185365756 0 0.351660474 0.713707858 0.083433722 0.395434679 0.088636473 9.36E-10 9.028829991 1.640666306 ISSIQS(ph)IVPALEIANAHR ddPTM_HeLa_CUDC101_4h_R1 2 ISSIQSIVPALEIANAHR 18 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 1 0 IS(0.003)S(0.009)IQS(0.988)IVPALEIANAHR;IS(0.187)S(0.187)IQS(0.626)IVPALEIANAHR ; 75.868 0.0086251 30832000 6563.8 6113.1 4526.4 5234.3 6216.8 6498.7 5920.2 4802.9 5259.5 6905.3 TRUE FALSE FALSE 5794.401314 6301.437365 4771.110876 5447.777379 5758.19905 6374.748125 6148.544097 5349.642722 5042.701184 6864.226968 0.844144773 0.918011219 0.695068927 0.793647617 0.838870724 0.928691338 0.895737295 0.779351083 0.734634972 1 12.74488154 -9.028643786 0.668705009 1.009113189 0.835820416 0 0.10521953 0.621187858 0.473432521 0.059925861 0.015179295 9.36E-10 9.028643786 -0.173292774 S(ph)KEFVSSDESSSGENK ddPTM_HeLa_CUDC101_4h_R1 1 SKEFVSSDESSSGENK 16 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 S(0.517)KEFVS(0.474)S(0.009)DESSSGENK 221.85 8.42E-32 15936000 2595.7 1994 2379.6 1751.3 2093 1236.9 988.24 584.81 2180.5 2424.8 TRUE FALSE FALSE 2291.435981 2055.432777 2508.248374 1822.725584 1938.60356 1213.308193 1026.356748 651.3824065 2090.618867 2410.377182 0.950654528 0.852743211 1.040604098 0.756199319 0.804273943 0.503368602 0.425807527 0.270240862 0.867340963 1 11.23504321 -5.004952508 0.709010718 0.977299164 0.143188953 0.910732872 0.073824655 0.204408415 0.124971863 0.010456088 0.111578909 9.89E-06 5.004952508 -0.834110212 down ELSDFISYLQR ddPTM_HeLa_CUDC101_4h_R1 2 ELSDFISYLQR 11 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 ; ; 164.66 0.00031203 27780000 2935.4 3338.4 2121.6 2542.5 2681.5 2998.9 2614.6 2841.2 2293.2 2165.9 FALSE FALSE TRUE 2591.316862 3441.252147 2236.300113 2646.19414 2483.691087 2941.700979 2715.445998 3164.630723 2198.673325 2153.01713 1.20357466 1.598339418 1.038681988 1.229063207 1.15358631 1.36631564 1.261228236 1.46985859 1.021205681 1 11.07214408 -13.31844845 0.138786066 6.63E-13 1.398500348 0.353778748 0.150869012 56.18611526 0.573585349 15.34820271 0.451090012 4.80E-14 13.31844845 1.398500348 ELSDIAHR ddPTM_HeLa_CUDC101_4h_R1 4 ELSDIAHR 8 0 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8;H3BR04;H3BMQ8 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;; ;;; 160.88 0.00088033 515378000 57492 44715.7 43413 42004.9 57560 48403.5 48306 50724.2 52762.6 48546.7 FALSE FALSE TRUE 50752.87491 46093.33772 45760.0381 43718.04138 53313.91348 47480.28388 50169.1786 56498.43789 50587.7033 48257.94207 1.051699943 0.955145117 0.94823849 0.905924279 1.104769727 0.983885384 1.039604601 1.170759371 1.04827726 1 15.55847877 -4.278635534 3.150767921 1.009562395 1.191745943 0.45501267 0.055327876 0.244912674 3.792176032 0.007787381 0.107321097 5.26E-05 4.278635534 0.182183548 NSPFQIPPPSPDS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 NSPFQIPPPSPDSK 14 0 Q86W92-4;Q86W92;Q86W92-3;F5GZP6;Q86W92-2 Q86W92-4;Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 NSPFQIPPPS(0.194)PDS(0.806)K 81.428 0.023752 18083000 8134.1 7068.7 7069.7 6545.8 6969.3 6183.7 5914.2 7093.9 7646.5 8643 TRUE FALSE FALSE 7180.633128 7286.478269 7451.909367 6812.766017 6455.188624 6065.756225 6142.312675 7901.440901 7331.308034 8591.591052 0.835774548 0.848094168 0.86734917 0.792957437 0.751337975 0.706010818 0.714921443 0.919671439 0.853312034 1 13.06870961 -9.028547868 0.29403875 1.082204009 0.759506357 0.244170322 0.075494034 1.688969795 0.225789311 0.192737228 0.041267616 9.36E-10 9.028547868 -0.322697652 ELSEPMEFQYLPDTDDR ddPTM_HeLa_CUDC101_4h_R1 4 ELSEPMEFQYLPDTDDR 17 0 Q2TAM5;E9PKH5;A0A087X0W8;Q04206-2;Q04206-3;Q04206-4;Q04206 Q2TAM5 RELA Transcription factor p65 0 0 ;;; ;;; 302.2 1.52E-122 41888500 6266.89 5205.17 5170.87 5277.02 5868.75 5198.6 4852.45 4737.17 5777.48 6021.5 FALSE FALSE TRUE 5532.294654 5365.535118 5450.422873 5492.239685 5435.824005 5099.445366 5039.610622 5276.430284 5539.329829 5985.68385 0.924254403 0.896394673 0.91057647 0.917562608 0.908137506 0.851940312 0.841944003 0.881508348 0.925429737 1 12.54730037 -13.52287874 0.065637055 1.440193452 0.719525381 0.502298798 0.029447459 61.32456739 0.314181849 4.192055962 0.678134036 3.00E-14 13.52287874 -0.720668071 DVGLPPDSASTALSSELESSSFVDS(ph)DEDGSTSR ddPTM_HeLa_CUDC101_4h_R1 2 DVGLPPDSASTALSSELESSSFVDSDEDGSTSR 33 0 A0A087WWA7;O14640-2;O14640 A0A087WWA7 DVL1 Segment polarity protein dishevelled homolog DVL-1 1 0 DVGLPPDSASTALS(0.001)S(0.005)ELES(0.056)S(0.061)S(0.123)FVDS(0.664)DEDGS(0.03)T(0.03)S(0.03)R;DVGLPPDSASTALS(0.001)S(0.001)ELES(0.006)S(0.021)S(0.019)FVDS(0.845)DEDGS(0.013)T(0.05)S(0.044)R ; 63.751 8.33E-05 0 1560.69 1202.2 1304.41 1270.27 1748.96 1407.27 1349.57 1131.8 1618.21 1611.98 TRUE FALSE FALSE 1377.748284 1239.238357 1374.93035 1322.077101 1619.942705 1380.428669 1401.623367 1260.639537 1551.506699 1602.391871 0.859807335 0.77336785 0.858048755 0.825064783 1.010952898 0.861480075 0.874706988 0.786723622 0.96824424 1 10.64601129 -9.026582597 0.869955183 0.99826879 0.859605892 0.400800975 0.061757399 0.447387155 0.627795208 0.037977865 0.012238576 9.41E-10 9.026582597 -0.138662898 S(ph)FNTSESK ddPTM_HeLa_CUDC101_4h_R1 1 SFNTSESK 8 0 F5H7T0;F6RJM5;Q96S38-2;Q96S38;A0A087X1U5 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 S(0.999)FNT(0.001)S(0.001)ESK 95.618 0.0031879 0 1059.8 723.79 968.45 889.64 955.53 748.62 912.73 883.42 1170.7 1526.8 TRUE FALSE FALSE 935.5718506 746.089112 1020.807336 925.9233646 885.0424556 734.3413208 947.9343018 983.9849619 1122.44325 1517.718526 0.616433044 0.491585956 0.672593316 0.610075814 0.583140049 0.483845528 0.624578462 0.648331654 0.739559564 1 10.56768854 -9.026363609 0.63500488 1.031126829 0.582356678 0.496261941 0.098213055 0.235828702 0.159433556 0.057547668 0.013998261 9.41E-10 9.026363609 -0.448770151 ELSLAGNELGDEGAR ddPTM_HeLa_CUDC101_4h_R1 1 ELSLAGNELGDEGAR 15 0 P13489;H0YCR7 P13489 RNH1 Ribonuclease inhibitor 0 0 140.33 0.0024122 7038200 1068.5 961.49 729.68 754.21 631.65 633.03 696.6 492.22 851.81 787.82 FALSE FALSE TRUE 943.2520497 991.1123673 769.128708 784.9699438 585.0544379 620.9560074 723.4680953 548.2523352 816.6980313 783.1340116 1.204458031 1.265571859 0.982116338 1.00234434 0.7470681 0.792911556 0.923811359 0.700074734 1.04285859 1 9.613115396 -6.053545711 2.012782467 1.109094157 0.800917635 0.685612293 0.09802462 0.164856655 1.321680041 0.017528268 0.033517025 8.84E-07 6.053545711 -0.308176522 THDHQLESSLS(ph)PVEVFAK ddPTM_HeLa_CUDC101_4h_R1 2 THDHQLESSLSPVEVFAK 18 0 Q9H410-4;Q9H410;Q5JW53 Q9H410-4 DSN1 Kinetochore-associated protein DSN1 homolog 1 0 THDHQLES(0.009)S(0.003)LS(0.988)PVEVFAK;THDHQLES(0.005)S(0.036)LS(0.959)PVEVFAK ; 105.16 0.00055329 19749100 3519 2625.1 2788.5 2614.3 4421.7 3319 3080.3 2478.6 3427.9 3680.7 TRUE FALSE FALSE 3106.508154 2705.976219 2939.254745 2720.922454 4095.52 3255.695605 3199.108203 2760.753805 3286.600511 3658.807033 0.849049465 0.739578829 0.803336912 0.743663831 1.119359388 0.889824354 0.874358274 0.754550262 0.898271071 1 11.83715761 -9.02521472 0.950768533 0.995063019 0.851567669 0.097306415 0.108907936 0.655435369 1.123212226 0.058959565 0.020599051 9.44E-10 9.02521472 -0.14349535 TAHNSEADLEESFNEHELEPSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 TAHNSEADLEESFNEHELEPSSPK 24 0 Q8IWS0-5;Q8IWS0 Q8IWS0-5 PHF6 PHD finger protein 6 1 0 TAHNSEADLEES(0.142)FNEHELEPS(0.277)S(0.581)PK 83.22 6.39E-05 49577000 3928.8 3013.4 2907.1 2819.5 4485.2 3989.5 3381.7 3313.1 3729.6 4112.1 TRUE FALSE FALSE 3468.27202 3106.239282 3064.266619 2934.491397 4154.335732 3913.406934 3512.133302 3690.249912 3575.864309 4087.641046 0.848477638 0.759909994 0.749641807 0.717893612 1.01631618 0.957375388 0.859207857 0.902782282 0.874799002 1 11.9970528 -9.024607603 0.970134346 0.994349456 0.851757932 0.060821966 0.095615579 0.573446022 1.027730603 0.051504512 0.018323517 9.45E-10 9.024607603 -0.142591525 GLS(ph)EDTTEETLK ddPTM_HeLa_CUDC101_4h_R1 1 GLSEDTTEETLK 12 0 P19338;H7BY16 P19338 NCL Nucleolin 1 0 GLS(1)EDTTEETLK 161.25 0.00010761 3610700 890.83 918.24 534.29 733.33 825.07 655.74 710.32 999.22 990.69 981.06 TRUE FALSE FALSE 786.4082578 946.529886 563.1753335 763.2383671 764.2062299 643.232852 737.7172803 1112.967166 949.8533389 975.2246115 0.806386804 0.970576291 0.577482692 0.782628287 0.783620738 0.659574056 0.756458842 1.141241877 0.973984175 1 9.929590725 -9.024535319 0.607854441 1.016624829 0.792777479 0.184055531 0.147634855 1.197156604 0.73161651 0.142731923 0.033612882 9.45E-10 9.024535319 -0.22384735 NSSEAS(ph)SGDFLDLK ddPTM_HeLa_CUDC101_4h_R1 1 NSSEASSGDFLDLK 14 0 Q9UK76-3;Q9UK76;J3KSH8;J3KT51;Q9UK76-2 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 NS(0.007)S(0.03)EAS(0.885)S(0.079)GDFLDLK 155.37 8.62E-05 104280000 6063 4936.1 4585.9 4716.6 5695.3 5713.3 5484 5611.8 5590.6 6505.8 TRUE FALSE FALSE 5352.304331 5088.17539 4833.827626 4908.963335 5275.169066 5604.328322 5695.519717 6250.624628 5360.153102 6467.103212 0.827620057 0.786778133 0.747448659 0.759066799 0.815692729 0.866590209 0.880691019 0.96652619 0.828833703 1 12.65890392 -9.024515119 0.870183706 0.997616312 0.828028601 0 0.079400508 0.393312355 0.552581503 0.040805075 0.013183808 9.45E-10 9.024515119 -0.169587711 SLS(ph)ASPALGSTK ddPTM_HeLa_CUDC101_4h_R1 2 SLSASPALGSTK 12 0 O95544;O95544-2 O95544 NADK NAD kinase 1 0 S(0.014)LS(0.749)AS(0.237)PALGS(0.001)TK;S(0.014)LS(0.984)AS(0.002)PALGSTK ; 131.32 0.0015216 121673000 4946.7 4353.7 4297.5 4125.7 4468 4455.8 3940.6 4600.6 4012.4 3932.3 TRUE FALSE FALSE 4366.855325 4487.832337 4529.835849 4293.963879 4138.404542 4370.813039 4092.590262 5124.313708 3847.007174 3908.910505 1.117154082 1.148103118 1.158848698 1.098506572 1.058710486 1.118166567 1.046990013 1.310931448 0.984163533 1 11.93255084 -9.023413916 0.631307096 0.990124375 1.128539729 0.391589641 0.06917731 0.819616631 0.547394644 0.061485799 0.014938458 9.48E-10 9.023413916 0.138415354 SYS(ph)AGNASQLEQLSR ddPTM_HeLa_CUDC101_4h_R1 2 SYSAGNASQLEQLSR 15 0 Q14678-2;Q14678 Q14678-2 KANK1 KN motif and ankyrin repeat domain-containing protein 1 1 0 S(0.002)YS(0.993)AGNAS(0.006)QLEQLSR;S(0.084)YS(0.916)AGNASQLEQLSR ; 161.48 5.46E-05 166346000 2253.34 1934.57 1950.27 1581.54 2038.85 2125.36 2058.45 1860.72 1999.89 2274.11 TRUE FALSE FALSE 1989.206901 1994.171809 2055.707495 1646.042037 1888.448097 2084.822299 2137.845106 2072.536844 1917.453688 2260.583493 0.879952856 0.882149151 0.909370303 0.728149189 0.835380823 0.922249634 0.945704997 0.916814995 0.848211842 1 11.14247949 -9.021788702 0.715076248 1.004440062 0.875009308 0 0.074058412 0.66489539 0.594557013 0.049169334 0.013318879 9.51E-10 9.021788702 -0.129430754 SASQS(ph)SLDKLDQELK ddPTM_HeLa_CUDC101_4h_R1 2 SASQSSLDKLDQELK 15 1 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 SAS(0.005)QS(0.497)S(0.497)LDKLDQELK;SASQS(0.765)S(0.235)LDKLDQELK ; 97.352 0.0039235 291950000 8015 6436.9 5855 6312.2 7040 8073.6 7421.6 6720.8 7243.5 10244.4 TRUE FALSE FALSE 7075.49385 6635.213259 6171.53901 6569.6388 6520.673226 7919.609532 7707.853598 7485.868706 6944.919864 10183.46585 0.694802138 0.651567291 0.606035224 0.645127984 0.640319644 0.777692943 0.75689885 0.73510029 0.681979982 1 13.31394103 -9.021009067 0.771088727 1.005052561 0.686362091 0 0.109727438 0.235390232 0.250912081 0.044079396 0.012798737 9.53E-10 9.021009067 -0.318690469 KNDMDEPPPLDYGS(ph)GEDDGKSDK ddPTM_HeLa_CUDC101_4h_R1 2 KNDMDEPPPLDYGSGEDDGKSDK 23 2 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5;H7C2H0 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 KNDMDEPPPLDY(0.017)GS(0.983)GEDDGKSDK;KNDMDEPPPLDY(0.397)GS(0.589)GEDDGKS(0.014)DK ; 108.88 8.44E-06 103402000 6942.2 5928.2 6216.8 5252.4 6405.1 6094.3 6167.9 5801.2 6603.6 6402.8 TRUE FALSE FALSE 6128.44584 6110.840815 6552.899013 5466.615575 5932.608534 5978.061381 6405.797969 6461.585159 6331.396813 6364.715861 0.962878151 0.960112116 1.029566623 0.858893892 0.932108937 0.939250316 1.006454665 1.015219736 0.994765038 1 12.63588039 -9.019508256 0.630877348 1.00272574 0.960400768 0.079633749 0.046317717 1.947692628 1.301225668 0.044628026 0.010887719 9.56E-10 9.019508256 -0.042324973 QGSIT(ph)SPQANEQSVT(ph)PQRR ddPTM_HeLa_CUDC101_4h_R1 2 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QGS(0.016)IT(0.777)S(0.197)PQANEQS(0.073)VT(0.937)PQRR;QGS(0.164)IT(0.561)S(0.275)PQANEQS(0.092)VT(0.908)PQRR ; 76.606 0.0050466 319080000 4427.6 3430 3702.7 4059.9 3804.5 3693.3 3315.6 3693.5 4399.1 4863.8 TRUE FALSE FALSE 3908.60344 3535.674234 3902.879162 4225.48027 3523.849615 3622.856456 3443.483803 4113.95311 4217.767236 4834.869901 0.808419569 0.731286323 0.807235612 0.873959456 0.728840628 0.749318292 0.712218503 0.850892205 0.872364163 1 12.23926135 -9.019001173 0.500704545 1.035317885 0.770257614 0.422534438 0.064332393 0.532227332 0.209291232 0.068014372 0.014262029 9.57E-10 9.019001173 -0.26506027 CSSTPCS(ph)PMRR ddPTM_HeLa_CUDC101_4h_R1 1 CSSTPCSPMRR 11 1 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 0 CSSTPCS(1)PMRR 79.744 0.021323 4252700 2373.9 2154.7 2405.8 2447.7 2151.6 2017.6 1977.3 1321.8 2516.2 716.55 TRUE FALSE FALSE 2095.635041 2221.083753 2535.864825 2547.527786 1992.880755 1979.117642 2053.565123 1472.268369 2412.481171 712.2879287 2.942117866 3.118238655 3.560168189 3.57654213 2.797858386 2.778535985 2.883054788 2.066956788 3.38694659 1 9.476316731 -9.018974946 0.765593992 0.965127817 2.999666474 0 0.8328789 0.266075359 0.279177461 0.31707874 0.09168306 9.57E-10 9.018974946 2.034538658 RPLDS(ph)PEAEELPAMK ddPTM_HeLa_CUDC101_4h_R1 3 RPLDSPEAEELPAMK 15 1 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 0 RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK ;; 173.51 1.05E-06 124538000 12617.5 12090.5 10944.1 10734.1 10472.5 10538.4 10334.5 11000.6 11648.8 9957.8 TRUE FALSE FALSE 11138.49578 12462.99397 11535.77115 11171.88299 9699.964539 10337.39758 10733.10513 12252.86384 11168.63153 9898.570563 1.125263058 1.259070074 1.165397678 1.128635991 0.979935888 1.044332362 1.084308594 1.237841743 1.128307513 1 13.27300449 -9.018747879 1.001152201 1.005524861 1.12259969 0 0.087396456 0.585076231 1.125029198 0.043361726 0.015944412 9.58E-10 9.018747879 0.117074829 GPEENYSRPEAPNEFYDGDHDNDKES(ph)DVEI ddPTM_HeLa_CUDC101_4h_R1 2 GPEENYSRPEAPNEFYDGDHDNDKESDVEI 30 2 O15379;O15379-2 O15379 HDAC3 Histone deacetylase 3 1 0 GPEENYSRPEAPNEFY(0.124)DGDHDNDKES(0.876)DVEI;GPEENYSRPEAPNEFY(0.01)DGDHDNDKES(0.99)DVEI ; 51.975 0.0064092 51858100 3339 2671.6 2454.31 3079.4 3286.4 3162.6 2651.9 2416.78 3075.5 3981.6 TRUE FALSE FALSE 2947.607482 2753.908829 2586.997422 3204.991242 3043.968819 3102.278674 2754.184671 2691.896466 2948.726588 3957.917266 0.744737013 0.695797472 0.653625947 0.809767114 0.769083489 0.783815948 0.695867166 0.680129544 0.745019764 1 11.95052574 -9.018617408 0.686207061 1.013395945 0.727912177 0.054351301 0.090737201 0.267254635 0.217363709 0.042835415 0.011229795 9.58E-10 9.018617408 -0.285483768 EYGS(ph)TSSIDK ddPTM_HeLa_CUDC101_4h_R1 3 EYGSTSSIDK 10 0 O43166-3;O43166-2;O43166 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 EYGS(0.933)T(0.065)S(0.002)SIDK;EYGS(0.959)T(0.034)S(0.005)S(0.001)IDK;EYGS(0.491)T(0.491)S(0.017)S(0.001)IDK ;; 187.31 2.36E-11 129885000 10325.5 7705 8725.4 8132.2 9799.4 9616.6 9181.2 9387.6 9170.4 10755.9 TRUE FALSE FALSE 9115.160542 7942.381917 9197.121517 8463.866266 9076.517785 9433.179377 9535.321959 10456.24644 8792.392231 10691.92343 0.852527668 0.742839394 0.860193358 0.791613064 0.848913467 0.882271505 0.891824752 0.977957475 0.822339618 1 13.38423379 -9.017020767 0.930825028 0.995628534 0.853777589 0 0.079166895 0.386758543 0.633495122 0.034090887 0.011797459 9.62E-10 9.017020767 -0.141850945 S(ph)PSPSVR ddPTM_HeLa_CUDC101_4h_R1 2 SPSPSVR 7 0 A0A088AWL3;O75376;O75376-2;E7EVK1 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 S(0.866)PS(0.134)PSVR;S(0.712)PS(0.258)PS(0.03)VR ; 95.741 0.026839 113938000 1307.82 873.65 1298.54 1180.12 1098.21 1045.55 1130.21 1048.37 1438.36 1538.39 TRUE FALSE FALSE 1154.519322 900.566121 1368.743 1228.250395 1017.197236 1025.607876 1173.802578 1167.712203 1379.070192 1529.239588 0.75496301 0.588897991 0.895048108 0.803177216 0.665165383 0.670665267 0.767572712 0.763590096 0.901801263 1 10.57859874 -9.016178132 0.673743569 1.014763607 0.735217298 0.484041832 0.08490217 0.446276747 0.348143013 0.069464146 0.017975715 9.63E-10 9.016178132 -0.279546309 TICTFDSSGFESMS(ph)PIKETVSSR ddPTM_HeLa_CUDC101_4h_R1 2 TICTFDSSGFESMSPIKETVSSR 23 1 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 TICTFDS(0.001)S(0.001)GFES(0.45)MS(0.546)PIKET(0.001)VSSR;TICTFDS(0.003)S(0.003)GFES(0.397)MS(0.595)PIKET(0.001)VS(0.001)SR ; 86.248 0.00019958 173386000 1881.03 1615.95 1949.36 1590.18 2160.68 1930.86 1436.67 616.12 1852.1 1068.33 TRUE FALSE FALSE 1660.538515 1665.735504 2054.748298 1655.034414 2001.290941 1894.032063 1492.082843 686.2566104 1775.755654 1061.975526 1.563631623 1.568525323 1.93483583 1.558448734 1.884498176 1.783498788 1.405006808 0.646207557 1.672124838 1 10.0525348 -9.015761886 0.818081615 1.00045083 1.571096672 0 0.396808311 0.661039209 0.809008813 0.225726287 0.069624613 9.64E-10 9.015761886 0.570645842 S(ph)ASLDVEPIY(ph)T(ph)FR ddPTM_HeLa_CUDC101_4h_R1 2 SASLDVEPIYTFR 13 0 Q13033-2;Q13033 Q13033-2 STRN3 Striatin-3 3 0 S(0.808)AS(0.192)LDVEPIY(1)T(1)FR;S(0.714)AS(0.286)LDVEPIY(1)T(1)FR ; 69.846 0.0024444 0 4022.5 3100.8 3412.4 3400.9 3956.2 3578.9 3441.3 3413.7 3845.5 4041.8 TRUE FALSE FALSE 3550.988648 3196.331973 3596.884666 3539.603402 3664.359008 3510.638445 3574.032094 3802.301809 3686.986862 4017.759194 0.883823165 0.795550907 0.895246453 0.880989435 0.912040476 0.873780203 0.889558563 0.946373744 0.917672435 1 11.97217538 -9.015724203 0.901685179 0.997375859 0.883856474 0.248541722 0.043306185 0.306437706 0.467639884 0.021423332 0.007218175 9.64E-10 9.015724203 -0.113519385 ELTDEEAERLQLEIDQK ddPTM_HeLa_CUDC101_4h_R1 1 ELTDEEAERLQLEIDQK 17 1 Q9Y266;A0A0A0MSU9;A0A0A0MSS4 Q9Y266 NUDC Nuclear migration protein nudC 0 0 79.804 0.002944 0 966.83 1081.2 1413.7 865.71 1518.3 1189.4 1173.1 1301.2 1198 1240.9 FALSE FALSE TRUE 853.499653 1114.51049 1490.128898 901.0173957 1406.298034 1166.714177 1218.34686 1449.323348 1148.617933 1233.519072 0.691922543 0.903521085 1.208030692 0.730444641 1.140069956 0.945842025 0.987700059 1.174950093 0.931171604 1 10.26856431 -6.985989257 24.96611108 0.851529644 1.019863385 0.192440538 0.14766381 288.6804839 514405.4688 0.025981825 0.034138229 1.03E-07 6.985989257 0.168333741 ELTHIYR ddPTM_HeLa_CUDC101_4h_R1 1 ELTHIYR 7 0 P22059 P22059 OSBP Oxysterol-binding protein 1 0 0 98.418 0.0011617 0 2063.8 1921.9 1855.1 2094.2 1680.5 1878 1707.1 1788.6 1759.8 1482.1 FALSE FALSE TRUE 1821.884493 1981.111461 1955.392317 2179.610528 1556.532863 1842.180279 1772.943419 1992.206994 1687.260299 1473.284403 1.236614253 1.344690446 1.327233434 1.479422794 1.056505356 1.250390132 1.203395227 1.352221601 1.145237332 1 10.52482024 -8.73816729 0.762424156 1.006940648 1.281146502 0.330542136 0.112839344 0.402782449 0.458423496 0.059048297 0.023020782 1.83E-09 8.73816729 0.274205854 GGCGS(ph)PGLQCK ddPTM_HeLa_CUDC101_4h_R1 2 GGCGSPGLQCK 11 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 GGCGS(1)PGLQCK;GGCGS(1)PGLQCK ; 108.56 0.0074056 48832000 4771 4536 4275.6 4405.4 5069.2 4334.2 4378.1 3381.3 3932 993.38 TRUE FALSE FALSE 4211.750612 4675.748784 4506.751869 4585.071254 4695.255215 4251.532356 4546.964784 3766.213524 3769.921296 987.4713316 4.265187735 4.735072942 4.563931858 4.64324493 4.754826864 4.305474215 4.604654979 3.813997839 3.817752653 1 9.947595054 -9.015169655 0.643623428 0.762860565 4.542263398 0.292927765 0.898341996 0.134739722 0.094514747 0.277915915 0.069277595 9.66E-10 9.015169655 3.779402832 S(ph)PDKPGGSPS(ph)ASR ddPTM_HeLa_CUDC101_4h_R1 1 SPDKPGGSPSASR 13 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 2 0 S(1)PDKPGGS(0.37)PS(0.58)AS(0.05)R 117.53 0.032338 15293000 7003.5 5521.7 5071.9 5562.7 4571.6 4252.8 3685.4 2356.9 5670.8 5296.8 TRUE FALSE FALSE 6182.560347 5691.817032 5346.102256 5789.57095 4234.362176 4171.684926 3827.547113 2625.199969 5437.047224 5265.294398 1.174209812 1.081006417 1.015347263 1.099572125 0.804202359 0.792298514 0.726938861 0.4985856 1.032619795 1 12.36229848 -4.974090579 0.776618859 1.08564796 0.465700581 0.869885116 0.071734499 0.343808316 0.259352943 0.014331486 0.149299933 1.06E-05 4.974090579 -0.619947379 down SPSGGAAGPLLT(ph)PSQSLDGSRR ddPTM_HeLa_CUDC101_4h_R1 1 SPSGGAAGPLLTPSQSLDGSRR 22 1 Q96CX2 Q96CX2 KCTD12 BTB/POZ domain-containing protein KCTD12 1 0 SPSGGAAGPLLT(0.4)PS(0.286)QS(0.286)LDGS(0.027)RR 85.231 0.0033535 22536000 697.19 548.92 527.46 610.86 543.27 801.16 680.19 411.67 745.84 839.68 TRUE FALSE FALSE 615.4664451 565.8315746 555.9760831 635.7735112 503.1940544 785.8792078 706.4251561 458.5328488 715.0961595 834.685546 0.737363248 0.677897895 0.666090465 0.761692249 0.60285464 0.941527275 0.846336874 0.549348016 0.856725222 1 9.705088978 -9.013020938 0.76449495 1.004715629 0.727957997 0.308540039 0.115325809 0.470702482 0.493357541 0.076123016 0.022135969 9.70E-10 9.013020938 -0.276757632 ELVEFAQDDDRLR ddPTM_HeLa_CUDC101_4h_R1 2 ELVEFAQDDDRLR 13 1 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 0 0 ; ; 168.82 6.90E-07 52310000 7248.3 5652.3 5778.4 6174.5 5870 6510.3 6160.4 5193.4 6119.9 6168.5 FALSE FALSE TRUE 6398.665262 5826.440663 6090.797783 6426.322798 5436.981795 6386.126874 6398.008692 5784.595664 5867.635132 6131.809488 1.043519906 0.950199232 0.993311647 1.048030408 0.886684723 1.041475096 1.04341283 0.943374982 0.95691739 1 12.58209716 -7.282333955 24.89216102 1.020551065 0.989706974 0 0.05319693 1493.335869 1779039.369 0.008197357 0.009378557 5.22E-08 7.282333955 -0.030844091 VMTIPYQPMPAS(ph)SPVICAGGQDR ddPTM_HeLa_CUDC101_4h_R1 2 VMTIPYQPMPASSPVICAGGQDR 23 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 VMTIPYQPMPAS(0.584)S(0.416)PVICAGGQDR;VMTIPYQPMPAS(0.867)S(0.133)PVICAGGQDR ; 137.03 1.04E-06 23673000 4624.1 4519.8 4148.9 4619 4747.4 3968.7 3732.6 2858.5 4490.1 1197.92 TRUE FALSE FALSE 4082.070008 4659.049681 4373.202084 4807.382785 4397.19376 3893.00366 3876.567632 3183.900086 4305.016178 1190.794719 3.428021593 3.912554875 3.672507121 4.037121353 3.692654739 3.269248342 3.255445772 2.673760671 3.615246281 1 10.21770901 -9.01250711 0.743976338 0.938465907 3.530170465 0 0.875752777 0.206047237 0.202815105 0.308943302 0.087690804 9.72E-10 9.01250711 2.591704559 QEESES(ph)PVERPLKENPPNK ddPTM_HeLa_CUDC101_4h_R1 2 QEESESPVERPLKENPPNK 19 2 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3;D6RBF8 H3BLV9 SRPK1 SRSF protein kinase 1 1 0 QEES(0.047)ES(0.953)PVERPLKENPPNK;QEES(0.048)ES(0.952)PVERPLKENPPNK ; 73.672 0.0093051 28119000 3679.5 3046.8 3327.7 3099.8 2848.3 3214 3482.3 2988.6 3794.9 3539.9 TRUE FALSE FALSE 3248.194588 3140.668297 3507.605528 3226.223242 2638.186584 3152.698305 3616.613477 3328.810144 3638.472616 3518.844517 0.923085567 0.892528295 0.996806057 0.916841658 0.749730933 0.895947033 1.027784393 0.945995234 1.033996415 1 11.78088605 -9.012365895 0.620447682 1.00643693 0.915855652 0.226943725 0.070664215 1.456443456 0.939277191 0.070774278 0.017184583 9.72E-10 9.012365895 -0.090581277 TPS(ph)GEFLER ddPTM_HeLa_CUDC101_4h_R1 4 TPSGEFLER 9 0 B3KT28;B1ANM7;Q9UNN5-2;Q9UNN5 B3KT28 FAF1 FAS-associated factor 1 1 0 T(0.296)PS(0.704)GEFLER;T(0.005)PS(0.995)GEFLER;T(0.046)PS(0.954)GEFLER;T(0.5)PS(0.5)GEFLER ;;; 126.03 0.0042469 65031000 5749.5 5345.9 4394.18 4449.3 5337.9 4947.6 4883.6 4803.1 5358 5999.6 TRUE FALSE FALSE 5075.552326 5510.600843 4631.742662 4630.761686 4944.133752 4853.232773 5071.962088 5349.865489 5137.140972 5963.914112 0.851043833 0.923990644 0.776627996 0.77646351 0.829008208 0.813766376 0.850441839 0.897039325 0.861370717 1 12.54204377 -9.01090739 0.514481375 1.022733356 0.829380447 0.133639578 0.060484146 0.59798788 0.251065905 0.056508667 0.012126861 9.75E-10 9.01090739 -0.19335291 ELGTGEQPLS(ph)PTTATS(ph)PYGGGHALAGQTSPK ddPTM_HeLa_CUDC101_4h_R1 1 ELGTGEQPLSPTTATSPYGGGHALAGQTSPK 31 0 A0A087WXB3;A0A087X223;A0A087WYW1;Q96NU1-4;Q96NU1-5;H7C3J6;H7BY14;A0A087WYU3;A0A087X1J5;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1 A0A087WXB3 SAMD11 Sterile alpha motif domain-containing protein 11 2 0 ELGT(0.023)GEQPLS(0.322)PT(0.322)T(0.322)AT(0.244)S(0.708)PY(0.061)GGGHALAGQTSPK 60.951 0.0040057 7198100 866.77 718.24 552.14 731.31 976.37 855.17 748.55 674.98 753.07 863.35 TRUE FALSE FALSE 765.1685345 740.3681231 581.9903585 761.1359828 904.3451303 838.8590571 777.4218242 751.8169948 722.0281359 858.2147558 0.891581658 0.862683982 0.678140704 0.88688289 1.053751551 0.977446556 0.905859307 0.876024316 0.841314055 1 9.745194896 -9.01051596 0.982670638 0.995383684 0.893514821 0 0.101791878 0.79667657 1.473085507 0.050970888 0.018613715 9.76E-10 9.01051596 -0.101868862 ELVNDDEDIDWVQTEK ddPTM_HeLa_CUDC101_4h_R1 2 ELVNDDEDIDWVQTEK 16 0 P41743 P41743 PRKCI Protein kinase C iota type 0 0 ; ; 198.48 1.31E-15 19053800 3919.8 3362 2762.7 2854.5 3178.3 3097 2996.8 2601 3432.8 2714.3 FALSE FALSE TRUE 3460.326986 3465.579235 2912.059919 2970.918848 2943.843141 3037.929885 3112.38758 2897.087326 3291.298531 2698.155223 1.282478842 1.28442545 1.079278128 1.101092637 1.091057741 1.125928508 1.153524287 1.073728932 1.219832908 1 11.39775763 ASS(ph)HS(ph)SQTQGGGSVTK ddPTM_HeLa_CUDC101_4h_R1 2 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.055)S(0.935)HS(0.483)S(0.384)QT(0.141)QGGGSVT(0.001)K;AS(0.001)S(0.999)HS(0.79)S(0.21)QTQGGGSVTK ; 193.31 3.90E-15 7472800 3732.2 2734.9 3176.6 3222.8 3486.8 3316.9 3892.1 2585.3 3247.5 3833.6 TRUE FALSE FALSE 3294.717174 2819.159027 3348.336605 3354.239714 3229.585711 3253.635659 4042.219601 2879.600102 3113.636675 3810.797577 0.864574176 0.739781888 0.878644572 0.88019362 0.847482881 0.853793883 1.060727976 0.755642367 0.817056433 1 11.89587726 -9.009610787 0.93878051 0.995605124 0.865188376 0 0.09875639 0.536029389 0.896339673 0.043402824 0.01525556 9.78E-10 9.009610787 -0.130416749 SPYSSTEPLCSPSES(ph)DSDLEPVGAGIQHLQK ddPTM_HeLa_CUDC101_4h_R1 1 SPYSSTEPLCSPSESDSDLEPVGAGIQHLQK 31 0 I3L419;I3L156;Q9BSJ6-2;Q9BSJ6;I3L2R2 I3L419 FAM64A Protein FAM64A 1 0 SPYSSTEPLCS(0.009)PS(0.046)ES(0.908)DS(0.037)DLEPVGAGIQHLQK 142.23 1.03E-16 9935300 1000.8 1093.2 846.32 795.32 909.17 914.35 816.1 679.52 940.25 554.93 TRUE FALSE FALSE 883.4877411 1126.880196 892.0746192 827.7565873 842.1023404 896.9102972 847.5772504 756.8738101 901.492497 551.6292517 1.601596976 2.042821683 1.617163369 1.500566884 1.526573034 1.625929543 1.536498015 1.372069751 1.634236209 1 9.107555152 -9.008768592 0.896831274 1.013575635 1.604352702 0 0.251640731 0.283734291 0.428574235 0.102798855 0.034737712 9.80E-10 9.008768592 0.590777067 VEGDNIY(ph)VR ddPTM_HeLa_CUDC101_4h_R1 1 VEGDNIYVR 9 0 O43491;H0Y5B0;E9PMV8;E9PPC9;Q6ZSX4 O43491 EPB41L2 Band 4.1-like protein 2 1 0 VEGDNIY(1)VR 128.6 0.021242 46075000 4183.5 3935.8 3258.5 3600.6 5281.9 2242 829.34 254.01 3137.5 4333.3 TRUE FALSE FALSE 3693.116472 4057.057333 3434.664366 3747.448031 4892.26476 2199.237585 861.3279216 282.9254717 3008.170922 4307.525339 0.857363841 0.941853388 0.797363706 0.869977014 1.135748342 0.510557086 0.199958875 0.065681673 0.698352461 1 12.07264357 -4.956176704 2.783195799 0.928054266 0.119065507 0.867172823 0.120281427 0.051390603 0.79621066 0.014131917 0.050493082 1.11E-05 4.956176704 -0.808988759 down APVPEPGLDLSLS(ph)PRPDSPQPR ddPTM_HeLa_CUDC101_4h_R1 2 APVPEPGLDLSLSPRPDSPQPR 22 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 0 APVPEPGLDLS(0.057)LS(0.934)PRPDS(0.009)PQPR;APVPEPGLDLS(0.446)LS(0.549)PRPDS(0.005)PQPR ; 66.77 0.0032321 19354700 1596.07 1260.5 1448.81 1139.38 1185.99 1194.12 1173.97 2315.3 1265.44 1800.12 TRUE FALSE FALSE 1408.981094 1299.334511 1527.137051 1185.848841 1098.501881 1171.344151 1219.250416 2578.864393 1213.278028 1789.412806 0.787398575 0.7261234 0.85342915 0.66270278 0.613889583 0.654596942 0.681369001 1.441179131 0.678031376 1 10.80527053 -9.008199915 0.793790549 1.001263204 0.781968311 0 0.246729164 1.134881123 1.299499341 0.147090448 0.04452006 9.81E-10 9.008199915 -0.219294893 EMDEAATAEER ddPTM_HeLa_CUDC101_4h_R1 1 EMDEAATAEER 11 0 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9J6B6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 0 120.27 0.023166 11638000 736.96 621.1 622.81 572.28 658.98 473.49 649.13 459.99 684.06 712 FALSE FALSE TRUE 650.574666 640.2353548 656.4809925 595.620052 610.3683583 464.4589671 674.1671615 512.3534023 655.8627573 707.7649923 0.919195881 0.904587486 0.927540921 0.841550597 0.862388455 0.656233315 0.95252968 0.723903284 0.926667417 1 9.467126594 -6.324190824 0.275738089 1.008938226 0.730955234 0.410553945 0.077439037 1.637650194 0.269727677 0.061850342 0.161603278 4.74E-07 6.324190824 -0.277982992 EMDEEDK(ac)AFK ddPTM_HeLa_CUDC101_4h_R1 3 EMDEEDKAFK 10 1 Q9Y2S6 Q9Y2S6 TMA7 Translation machinery-associated protein 7 0 1 ;; EMDEEDK(1)AFK;EMDEEDK(1)AFK;EMDEEDK(1)AFK 129.85 0.0021784 3486900 4094.2 1693.15 2074.56 1329.48 3882.14 3481.4 4136.78 3254.24 3299.25 2180.71 FALSE TRUE FALSE 3614.284082 1745.313945 2186.716989 1383.701941 3595.762267 3414.998095 4296.33699 3624.689528 3163.253519 2167.73904 1.667305896 0.80513102 1.00875472 0.638315736 1.658761595 1.575373249 1.981943819 1.672106033 1.459240924 1 11.08197538 -5.55216867 24.98902146 1.209581379 1.742029335 0.481036087 0.305981099 180.9309375 154362.6802 0.053243337 0.106487858 2.80E-06 5.55216867 0.532447956 RS(ph)SDGSLSHEEDLAK ddPTM_HeLa_CUDC101_4h_R1 1 RSSDGSLSHEEDLAK 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 RS(0.5)S(0.5)DGSLSHEEDLAK 109.77 0.0013844 31904000 4345.8 3516.4 3442.4 3151.8 5285.5 4444.4 3830.5 2395.4 5031.4 4502.8 TRUE FALSE FALSE 3836.391912 3624.736116 3628.506557 3280.344027 4895.599195 4359.630475 3978.243668 2668.082653 4824.003562 4476.017145 0.857099468 0.809812831 0.810655196 0.732871193 1.093740045 0.973997716 0.888790981 0.5960841 1.077744657 1 12.12799985 -9.007726819 0.823560765 0.999626353 0.853987781 0.247018237 0.128838593 0.94231293 1.174088191 0.082065606 0.025704199 9.82E-10 9.007726819 -0.145638572 EMDRETLIDVAR ddPTM_HeLa_CUDC101_4h_R1 3 EMDRETLIDVAR 12 1 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 0 ;; ;; 127.52 0.0026086 86630000 8113.7 7916.3 7566.6 8059.8 9296.2 8078.8 7501.2 7734.4 8822.4 7652 FALSE FALSE TRUE 7162.624386 8160.19182 7975.673284 8388.513481 8610.437847 7924.71035 7790.523797 8614.852832 8458.736938 7606.485564 0.94164701 1.072793967 1.048535913 1.102810675 1.131986352 1.041835981 1.02419491 1.132566776 1.112042726 1 12.89301432 -7.248234587 23.11281969 0.972444423 1.077443769 0.048802854 0.057282665 139.4096659 244013.4006 0.006587217 0.008035468 5.65E-08 7.248234587 0.104999346 AAKPGPAEAPSPT(ph)AS(ph)PSGDASPPATAPYDPR ddPTM_HeLa_CUDC101_4h_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 AAKPGPAEAPS(0.164)PT(0.741)AS(0.667)PS(0.269)GDAS(0.141)PPAT(0.01)APY(0.007)DPR 68.934 5.36E-05 37519000 1733 1486.3 1576.2 1235.3 1510.5 1504.8 1506.7 1523.7 1653.1 1764.2 TRUE FALSE FALSE 1529.860367 1532.091141 1661.41414 1285.680873 1399.073424 1476.098447 1564.813924 1697.151849 1584.958518 1753.70646 0.872358289 0.873630323 0.947372994 0.733122049 0.797780847 0.841702121 0.892289536 0.967751381 0.903776404 1 10.77619157 -9.007394619 0.567399706 1.014453717 0.857447863 0.141339155 0.070061478 0.892405399 0.46918881 0.071963585 0.016455383 9.83E-10 9.007394619 -0.157005854 GIAPAS(ph)PMLGNASNPNK ddPTM_HeLa_CUDC101_4h_R1 1 GIAPASPMLGNASNPNK 17 0 J3KNR0;P27448-8;P27448-6;P27448-3;P27448-4;P27448-2;P27448;P27448-7;H0YIY6;H0YKP9 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 0 GIAPAS(1)PMLGNASNPNK 99.451 0.0011195 0 2400.6 2152.6 1856.9 2009.6 1870.1 1724.4 2236 1926.6 2073.4 2838.3 TRUE FALSE FALSE 2119.205307 2218.919055 1957.289631 2091.560174 1732.146449 1691.509943 2322.243269 2145.916356 1987.933574 2821.417665 0.751113645 0.786455363 0.693725589 0.741315332 0.613927697 0.599524829 0.823076745 0.760580889 0.704586775 1 11.46220453 -9.007235273 0.474240898 1.048714196 0.702006439 0 0.111925147 0.599729308 0.210446225 0.097219618 0.020199376 9.83E-10 9.007235273 -0.346707757 EMDYETEVEMEK ddPTM_HeLa_CUDC101_4h_R1 1 EMDYETEVEMEK 12 0 G3V198;Q12769;E9PR16;Q12769-3 G3V198 NUP160 Nuclear pore complex protein Nup160 0 0 113.67 0.026756 20597000 907.36 932.23 992.88 850.72 1020.8 817.25 873.25 1022.6 826.99 961.4 FALSE FALSE TRUE 801.0006363 960.9509013 1046.558096 885.4160387 945.4976177 801.6623179 906.931545 1139.008651 792.9011222 955.68155 0.838145966 1.00551371 1.095090824 0.92647602 0.989343801 0.838838333 0.948989279 1.191828649 0.829670848 1 9.900386157 EMEAELEDER ddPTM_HeLa_CUDC101_4h_R1 2 EMEAELEDER 10 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 200.56 2.95E-16 297740000 9898.4 8105.1 7955.6 7858 8687.6 8117.6 7528.3 7806.6 7721.3 7338.8 FALSE FALSE TRUE 8738.124557 8354.808524 8385.7038 8178.483205 8046.733056 7962.770305 7818.669053 8695.271789 7403.024746 7295.148491 1.19779941 1.145255444 1.149490488 1.121085227 1.103025259 1.091515864 1.071762838 1.191925264 1.014787397 1 12.83272163 -9.493776202 1.244109835 1.000140816 1.137306023 0.631791433 0.038543059 0.259844507 0.720888141 0.030137169 0.007363668 3.21E-10 9.493776202 0.137165207 EMEAELEDERK ddPTM_HeLa_CUDC101_4h_R1 3 EMEAELEDERK 11 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;; ;; 121.36 0.0041279 68914000 8893.3 8037.1 7958.1 6851.9 8489.5 8244.7 7905.5 8207 8082.2 7814.4 FALSE FALSE TRUE 7850.840855 8284.713525 8388.338958 7131.350098 7863.246498 8087.446084 8210.417783 9141.251706 7749.048295 7767.919601 1.010674834 1.066529258 1.079869436 0.918051482 1.01227187 1.041134113 1.056964825 1.176795355 0.99757061 1 12.92331255 -4.025869614 1.320240268 1.010024122 1.330490722 0.579304604 0.041548967 1.186179958 1.191432857 0.006019657 0.5896898 9.42E-05 4.025869614 0.3204666 AVSEGCAS(ph)EDEVEGEA ddPTM_HeLa_CUDC101_4h_R1 2 AVSEGCASEDEVEGEA 16 0 Q9BYX2-6;Q9BYX2-5;Q9BYX2-4;Q9BYX2-2;Q9BYX2 Q9BYX2-6 TBC1D2 TBC1 domain family member 2A 1 0 AVSEGCAS(1)EDEVEGEA;AVSEGCAS(1)EDEVEGEA ; 156.52 9.03E-05 31486000 9810.3 9090 8574.7 8072.8 9581.8 9426.4 7503.8 7727 9303.8 6362.8 TRUE FALSE FALSE 8660.351505 9370.052126 9038.274219 8402.043678 8874.969704 9246.607125 7793.22408 8606.610446 8920.293426 6324.953783 1.36923554 1.481441991 1.428986603 1.328396059 1.403167518 1.461924852 1.232139293 1.360738867 1.410333377 1 12.62683922 -9.006504127 0.7583103 0.992872038 1.384857642 0 0.141796721 0.229213409 0.236361847 0.052245909 0.015195785 9.85E-10 9.006504127 0.391985604 EMEENFAVEAANYQDTIGR ddPTM_HeLa_CUDC101_4h_R1 4 EMEENFAVEAANYQDTIGR 19 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ;;; ;;; 321.82 5.41E-167 109033100 7163.1 6413.2 6130.97 6062.16 7231.9 6426.49 6561.8 6430.48 7091.25 6567.74 FALSE FALSE TRUE 6323.452277 6610.78309 6462.428783 6309.401088 6698.417145 6303.915411 6814.890824 7162.49985 6798.945674 6528.67479 0.968565977 1.012576565 0.98985307 0.96641375 1.025999511 0.965573507 1.043839836 1.097083264 1.04139751 1 12.67257446 -4.512414301 3.178556671 0.987707374 1.093889438 0.587634289 0.025734746 0.089992556 1.728024334 0.00271724 0.017386869 3.07E-05 4.512414301 0.106182063 LFEDDDS(ph)NEK ddPTM_HeLa_CUDC101_4h_R1 4 LFEDDDSNEK 10 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 LFEDDDS(1)NEK;LFEDDDS(1)NEK;LFEDDDS(1)NEK;LFEDDDS(1)NEK ;;; 145.81 6.37E-05 33633000 8527.7 6521.7 5766.5 6226.6 5182.17 6763.7 5776.4 4399.76 9302.3 14968.5 TRUE FALSE FALSE 7528.095933 6722.625847 6078.254433 6480.547662 4799.891643 6634.693692 5999.197683 4900.610894 8918.855257 14879.4667 0.505938559 0.451805564 0.408499482 0.435536286 0.322584925 0.445895933 0.403186338 0.329353934 0.599406917 1 13.8610352 -9.005457424 0.424418081 1.131631856 0.367328732 0.521863006 0.12875315 0.178651619 0.049384394 0.059983212 0.01213238 9.88E-10 9.005457424 -0.764303124 TVTCVTVVEPEAPPS(ph)PDVLQAATHR ddPTM_HeLa_CUDC101_4h_R1 4 TVTCVTVVEPEAPPSPDVLQAATHR 25 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 TVTCVTVVEPEAPPS(1)PDVLQAATHR;TVTCVTVVEPEAPPS(0.994)PDVLQAAT(0.006)HR;TVTCVT(0.001)VVEPEAPPS(0.998)PDVLQAAT(0.001)HR;TVTCVTVVEPEAPPS(1)PDVLQAATHR ;;; 219.51 7.55E-39 560355100 8028.8 7569.36 7294.49 6951.7 8165.7 7225.8 6967.62 7029.81 7956.9 2960.65 TRUE FALSE FALSE 7087.676235 7802.56301 7688.852194 7235.220374 7563.332579 7087.979904 7236.363437 7830.055155 7628.913214 2943.039922 2.408284095 2.651191698 2.612554501 2.458417339 2.569904853 2.408387277 2.458805734 2.660533109 2.592188151 1 11.5230914 -9.005420459 0.618492181 0.8791124 2.55678467 0 0.496652294 0.120041545 0.077114723 0.107733159 0.026310871 9.88E-10 9.005420459 1.677672271 EMFEDTVEER ddPTM_HeLa_CUDC101_4h_R1 2 EMFEDTVEER 10 0 E9PC52;Q16576 E9PC52 RBBP7 Histone-binding protein RBBP7 0 0 ; ; 230.24 2.78E-33 98086000 6094.5 5704.6 5621.4 5343.9 6370 6096 5821.1 5741.3 5859.2 6155 FALSE FALSE TRUE 5380.111949 5880.351964 5925.309888 5561.84734 5900.097791 5979.728957 6045.621777 6394.866385 5617.681296 6118.389786 0.879334619 0.961094695 0.968442694 0.909037759 0.964321986 0.977337039 0.988106673 1.045187804 0.918163355 1 12.5789363 -4.14953028 0.900280658 0.943362495 1.114555154 0.493435397 0.032523089 2.3720898 1.251962177 0.007215689 0.416912176 7.09E-05 4.14953028 0.171192659 EMFFEDHIDDAK ddPTM_HeLa_CUDC101_4h_R1 1 EMFFEDHIDDAK 12 0 Q9UIV1 Q9UIV1 CNOT7 CCR4-NOT transcription complex subunit 7 0 0 134.18 0.0013238 3331100 4793.8 3652.8 3723.1 3651.2 3895.9 4055.1 3772.4 3307.9 4022.1 3618.7 FALSE FALSE TRUE 4231.878031 3765.338438 3924.382048 3800.111718 3608.507219 3977.755724 3917.902732 3684.457965 3856.307336 3597.175811 1.176444592 1.046748515 1.090961981 1.056415343 1.003150084 1.105799642 1.089160757 1.024264078 1.072037492 1 11.81264896 -6.249433538 21.49347428 1.082633696 1.057471113 0.038975084 0.049490075 425.1139839 761049.7251 0.010616199 0.017481463 5.63E-07 6.249433538 -0.025162583 TASESISNLSEAGS(ph)IK ddPTM_HeLa_CUDC101_4h_R1 4 TASESISNLSEAGSIK 16 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 TASESISNLSEAGS(1)IK;TASESISNLSEAGS(1)IK;TASESISNLSEAGS(1)IK;TASESISNLSEAGS(1)IK ;;; 289.5 1.15E-103 509000000 12497.7 10944 10365.4 9777.8 10750.3 11104.3 10789.9 10113.5 11048.2 13143.2 TRUE FALSE FALSE 11032.73855 11281.17167 10925.78488 10176.58095 9957.271787 10892.50398 11206.07006 11264.77996 10592.78852 13065.02366 0.844448417 0.863463547 0.836262158 0.778917912 0.762131937 0.83371483 0.857715252 0.862208921 0.810774538 1 13.67342212 -9.004953602 0.526634908 1.02267304 0.820881228 0 0.066210795 0.425801347 0.189076765 0.042479958 0.009298437 9.89E-10 9.004953602 -0.201791812 YKLDEDEDEDDADLSKYNLDAS(ph)EEEDSNK ddPTM_HeLa_CUDC101_4h_R1 1 YKLDEDEDEDDADLSKYNLDASEEEDSNK 29 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 YKLDEDEDEDDADLS(0.055)KY(0.05)NLDAS(0.887)EEEDS(0.009)NK 53.998 0.0040217 11326000 3338.7 2553.3 2928.1 2498.3 2808.3 3395.1 3028.1 2645.6 2828.8 3907.6 TRUE FALSE FALSE 2947.342647 2631.964147 3086.401943 2600.191473 2601.137304 3330.344124 3144.894831 2946.76441 2712.195667 3884.357421 0.758772257 0.677580321 0.794572077 0.669400673 0.669644171 0.857373244 0.809630652 0.758623394 0.698235351 1 11.92346024 -9.004944426 0.757625039 1.004599733 0.748507453 0 0.109715416 0.307092499 0.31619717 0.04569412 0.01330344 9.89E-10 9.004944426 -0.25609228 EMIDKWEDR ddPTM_HeLa_CUDC101_4h_R1 1 EMIDKWEDR 9 1 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 87.639 0.039811 7476200 4227.3 3385.2 3090.4 3160.8 2981.5 3070.7 3127.6 2901.8 3850.3 4315.2 FALSE FALSE TRUE 3731.782302 3489.494 3257.476372 3289.711086 2761.560685 3012.131514 3248.23258 3232.129183 3691.589004 4289.532998 0.869974028 0.81349042 0.759401169 0.766915906 0.643790521 0.702204999 0.757246204 0.75349209 0.860603941 1 12.06660487 -7.546883692 0.553763067 0.986836792 0.710669633 0.694713809 0.052101574 0.167835225 0.121228606 0.015478382 0.014501267 2.84E-08 7.546883692 -0.276167159 EMIDKWEDRWEWLR ddPTM_HeLa_CUDC101_4h_R1 3 EMIDKWEDRWEWLR 14 2 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ;; ;; 75.89 0.016358 87067000 10139.7 9996.3 9926.5 9375.4 12434.4 11005.8 10411.8 10193.6 10831.2 10512 FALSE FALSE TRUE 8951.139737 10304.27415 10463.15662 9757.769336 11517.13908 10795.8827 10813.38661 11353.99822 10384.73335 10449.47416 0.856611501 0.986104564 1.001309392 0.93380482 1.102174034 1.033150811 1.034825911 1.086561682 0.993804396 1 13.35114272 -6.036707049 1.228887595 0.935771091 1.060890949 0.381473002 0.052956114 0.333686242 0.997239418 0.010589352 0.023776579 9.19E-07 6.036707049 0.125119858 EMLANSWNCLPK ddPTM_HeLa_CUDC101_4h_R1 1 EMLANSWNCLPK 12 0 Q9Y2U9 Q9Y2U9 KLHDC2 Kelch domain-containing protein 2 0 0 113.71 0.026706 77568000 1972.6 1745.2 1628.4 1671.9 2024.6 2039.3 1915 1762 1839.8 1776.1 FALSE FALSE TRUE 1741.374818 1798.967543 1716.43623 1740.087309 1875.249292 2000.40375 1988.862191 1962.578958 1763.962665 1765.535678 0.986315281 1.01893582 0.972190056 0.985586035 1.062141827 1.133029355 1.126492212 1.11160538 0.999109045 1 10.78589026 -5.537010166 2.976755448 0.993232946 1.123409461 0.952158726 0.01310676 0.037161734 0.67013467 0.001947073 0.004432327 2.90E-06 5.537010166 0.130176515 QSSIFGGADVGFSGGIPS(ph)PDKGHR ddPTM_HeLa_CUDC101_4h_R1 2 QSSIFGGADVGFSGGIPSPDKGHR 24 1 E9PR71;Q9P2Y5-2;Q9P2Y5 E9PR71 UVRAG UV radiation resistance-associated gene protein 1 0 QSSIFGGADVGFS(0.025)GGIPS(0.975)PDKGHR;QSSIFGGADVGFS(0.09)GGIPS(0.909)PDKGHR ; 98.446 7.50E-06 28284000 2402.03 1992.07 1822.47 2113.34 2312.04 2184.7 1924.28 1964.77 2476.1 2632.75 TRUE FALSE FALSE 2120.467685 2053.443316 1920.998241 2199.53114 2141.485415 2143.030487 1998.500124 2188.431475 2374.03411 2617.090286 0.810238644 0.784628382 0.734020623 0.840449086 0.818269598 0.818859976 0.763634382 0.836207863 0.907127325 1 11.35374798 -9.004435889 0.69645556 1.008405887 0.797696367 0.661207947 0.041691611 0.222550152 0.188542989 0.026390359 0.007128174 9.90E-10 9.004435889 -0.21070952 WNSPAEEGS(ph)SDCEVFSK ddPTM_HeLa_CUDC101_4h_R1 2 WNSPAEEGSSDCEVFSK 17 0 A0A087WYC1;P34932;A0A087WTS8 A0A087WYC1 HSPA4 Heat shock 70 kDa protein 4 1 0 WNSPAEEGS(0.896)S(0.104)DCEVFSK;WNSPAEEGS(0.783)S(0.217)DCEVFSK ; 177.44 1.63E-07 15445500 3794 3343.09 3681.9 2920.1 3772 3636.3 3146.91 3466.85 3493.2 2223.4 TRUE FALSE FALSE 3349.273071 3446.08664 3880.954651 3039.1943 3493.747075 3566.943636 3268.287373 3861.502191 3349.208817 2210.175118 1.515388099 1.559191673 1.755948938 1.37509208 1.580755772 1.613873764 1.47874589 1.747147617 1.515359028 1 11.10994497 -9.004164963 0.554417438 0.932915563 1.592616971 0.118842781 0.191022124 0.343908918 0.171755487 0.115135559 0.026025515 9.90E-10 9.004164963 0.659701408 T(ph)SPTVATQTGASATSTR ddPTM_HeLa_CUDC101_4h_R1 2 TSPTVATQTGASATSTR 17 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 T(0.998)S(0.002)PTVATQTGASATSTR;T(0.847)S(0.153)PTVATQTGASATSTR ; 227.41 1.99E-32 147347000 4116.9 3400.7 3662.1 3500 3345.4 3612.2 3337.1 3461.3 4249.5 4044.4 TRUE FALSE FALSE 3634.323223 3505.471536 3860.084203 3642.745128 3098.616507 3543.303303 3465.813065 3855.320401 4074.333811 4020.343729 0.903983208 0.87193329 0.960137855 0.906078031 0.770734225 0.881343373 0.862068842 0.958952931 1.013429221 1 11.97310314 -9.003702706 0.407587482 1.02701674 0.876444324 0.465151887 0.050477809 1.415451105 0.359819736 0.09147255 0.018461133 9.92E-10 9.003702706 -0.150572416 RCS(ph)DPSLNEK ddPTM_HeLa_CUDC101_4h_R1 3 RCSDPSLNEK 10 1 G5E953;Q13615-3;Q13615-2;Q13615 G5E953 MTMR3 Myotubularin-related protein 3 1 0 RCS(0.999)DPS(0.001)LNEK;RCS(1)DPSLNEK;RCS(1)DPSLNEK ;; 90.759 0.014584 52159000 14130.3 12733.4 13289.3 11888.7 12890.8 12557.5 11043.1 12090.3 12562.5 8881.8 TRUE FALSE FALSE 12473.96765 13125.70096 14007.75976 12373.57257 11939.87137 12317.98661 11469.03607 13466.61088 12044.66843 8828.970659 1.412845068 1.486662655 1.58656771 1.401473972 1.352351461 1.395178111 1.299023013 1.525275301 1.364221142 1 13.10802953 -9.002975478 0.757489528 0.99230831 1.430613818 0.198841593 0.135401245 0.243216972 0.250512396 0.06189783 0.018059476 9.93E-10 9.002975478 0.438305508 VRVCFVTSMMT(ph)GRAAR ddPTM_HeLa_CUDC101_4h_R1 1 VRVCFVTSMMTGRAAR 16 2 A0A087WZG9;B4DSP0;Q86TG7-2;A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7 A0A087WZG9 PEG10 Retrotransposon-derived protein PEG10 1 0 VRVCFVT(0.072)S(0.411)MMT(0.517)GRAAR 44.294 0.0033332 0 683.69 670.87 376.26 599.33 597.63 548.14 447.29 485.26 635.16 763.61 TRUE FALSE FALSE 603.5488946 691.5387095 396.6017537 623.7732679 553.5440255 537.6851428 464.5421251 540.5000369 608.978436 759.0680138 0.795118334 0.911036557 0.522485135 0.821762025 0.729241669 0.708349098 0.61199012 0.712057454 0.802271239 1 9.568085349 -9.001764643 0.22183947 1.16675535 0.62957528 0.27158669 0.111755504 2.837609318 0.243023754 0.459244877 0.122190776 9.96E-10 9.001764643 -0.53718007 EMLQQSK(ac)ILK ddPTM_HeLa_CUDC101_4h_R1 3 EMLQQSKILK 10 1 P07900;P07900-2;P08238;Q58FF7 P07900;P08238 HSP90AA1;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 1 ;; EMLQQSK(1)ILK;EMLQQSK(1)ILK;EMLQQSK(1)ILK 170.99 0.00054746 4792490 992.79 783.86 909.42 1029.03 1106.21 959.23 1022.02 1029.98 1145.33 875.92 FALSE TRUE FALSE 876.4166612 808.0097975 958.585996 1070.998291 1024.607092 940.9342859 1061.439654 1147.22876 1098.119013 870.7099889 1.006554045 0.927989581 1.100924542 1.230028718 1.176748981 1.080651765 1.219050737 1.317578499 1.261176542 1 9.766048464 -6.521857064 4.573317079 0.997674292 1.195568679 0.295097018 0.102380878 0.078920137 4.269596811 0.009372866 0.013865845 3.01E-07 6.521857064 0.197894387 HT(ph)PSPGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPATSPR ddPTM_HeLa_CUDC101_4h_R1 1 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPR 40 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 HT(0.52)PS(0.481)PGLPAEGAPEAPRPS(0.5)S(0.5)PPPEVLEPHS(0.001)LDQPPATSPR 63.282 5.46E-05 25089000 721.83 909.92 944.29 819.73 806.84 733.71 694.39 821.32 665.13 848.85 TRUE FALSE FALSE 637.2181816 937.9535567 995.3411737 853.1621326 747.3210207 719.7157042 721.1728549 914.8157489 637.7130599 843.8010024 0.7551759 1.111581468 1.17959231 1.011094002 0.885660266 0.852944832 0.854671721 1.084160538 0.755762387 1 9.720758991 -9.000718043 0.004818803 3.16E-07 1.842677925 0.014683384 0.140861126 112080.913 156.4008461 30445.17098 29363.77029 9.98E-10 9.000718043 1.84267761 EMNDAAMFYTNR ddPTM_HeLa_CUDC101_4h_R1 1 EMNDAAMFYTNR 12 0 Q01518-2;Q01518;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 0 0 134.75 0.0068902 6861400 1393.9 1271.1 1027.3 1362.1 1194.4 1279.9 1199.8 1268 1331.1 1041.9 FALSE FALSE TRUE 1230.509155 1310.261084 1082.838945 1417.652325 1106.291492 1255.48804 1246.076688 1412.343995 1276.231495 1035.702732 1.188091058 1.26509378 1.045511334 1.368783031 1.068155424 1.212208871 1.203121947 1.363657689 1.232237257 1 10.01639426 -13.52287874 0.16543998 0.139252982 1.271104266 0 0.122327267 40.42682305 0.440993936 11.17845273 0.158062032 3.00E-14 13.52287874 1.131851284 EMPNVFGK(ac)ESK ddPTM_HeLa_CUDC101_4h_R1 2 EMPNVFGKESK 11 1 A0A024R571;Q9H4M9;C9J2Z4;C9JC03 A0A024R571 EHD1 EH domain-containing protein 1 0 1 ; EMPNVFGK(1)ESK;EMPNVFGK(1)ESK 87.184 0.028464 717110 304.39 276.964 301.385 396.2 299.72 148.8 173.59 199.13 147.56 220.76 FALSE TRUE FALSE 268.7098656 285.4969326 317.6787847 412.3587485 277.6102527 145.9618879 180.2854244 221.7981543 141.4775143 219.4469097 1.224486897 1.300984065 1.447633895 1.879082048 1.265045168 0.665135308 0.821544604 1.010714412 0.644700418 1 7.777728144 -5.272768592 24.45908605 1.218205771 0.831372758 0.278705834 0.30576093 542.5479019 1171328.843 0.042069504 0.094895869 5.34E-06 5.272768592 -0.386833014 TVAISDAAQLPHDYCT(ph)TPGGTLFSTTPGGTR ddPTM_HeLa_CUDC101_4h_R1 2 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 0 TVAISDAAQLPHDY(0.293)CT(0.318)T(0.318)PGGT(0.018)LFS(0.014)T(0.014)T(0.016)PGGT(0.008)R;TVAISDAAQLPHDY(0.09)CT(0.245)T(0.245)PGGT(0.103)LFS(0.103)T(0.103)T(0.103)PGGT(0.007)R ; 64.002 0.0010548 35234000 2761.08 3014.5 2407.1 2304.5 3077.3 2161.72 1949.42 1737.15 3043.6 1760.86 TRUE FALSE FALSE 2437.430388 3107.373172 2537.235107 2398.487471 2850.29371 2120.488793 2024.609782 1934.900134 2918.14152 1750.386326 1.392509957 1.775249912 1.449528638 1.370261773 1.628379785 1.211440446 1.156664533 1.105413191 1.667141405 1 10.77345766 -9.000181023 0.979527577 1.0168916 1.389385439 0 0.280836099 0.464238416 0.854174917 0.108048679 0.039786238 1.00E-09 9.000181023 0.372493839 PSDSVSSTPAATST(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 PSDSVSSTPAATSTPSK 17 0 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 0 PSDSVSSTPAAT(0.002)S(0.234)T(0.763)PS(0.001)K 125.33 0.0013755 24148000 5075.8 3964.4 3573.7 3607.8 3450.5 2373 2210 1527 3662.4 5163.4 TRUE FALSE FALSE 4480.822418 4086.538465 3766.905032 3754.941678 3195.963489 2327.738979 2295.24044 1700.827508 3511.434322 5132.687867 0.872997255 0.796179033 0.73390495 0.731574133 0.622668585 0.45351267 0.44718099 0.331371701 0.68413167 1 12.32549881 -4.947997571 0.306217428 1.001186752 1.61E-14 0.750370036 0.098346938 0.436226499 0.041405662 0.014702006 0.155373015 1.13E-05 4.947997571 -1.001186752 down EMQENDASMR ddPTM_HeLa_CUDC101_4h_R1 2 EMQENDASMR 10 0 P31930 P31930 UQCRC1 "Cytochrome b-c1 complex subunit 1, mitochondrial" 0 0 ; ; 175.93 7.85E-07 34891000 3797.6 3792.1 2478.2 3047.9 3374.6 3501.3 2859.2 2564.8 2154 2284 FALSE FALSE TRUE 3352.451085 3908.930106 2612.178988 3172.206536 3125.662481 3434.518536 2969.480302 2856.766465 2065.211208 2270.414666 1.476580968 1.721681138 1.150529472 1.397192585 1.376692341 1.512727427 1.307902184 1.25825758 0.909618511 1 11.1487401 -9.264163079 1.002851318 1.000811919 1.404340975 0.572490271 0.151217869 0.343315698 0.621245694 0.09764272 0.026849278 5.44E-10 9.264163079 0.403529056 EMQPTHPIR ddPTM_HeLa_CUDC101_4h_R1 3 EMQPTHPIR 9 0 P27348;P31946-2;P31946;P63104;E7EX29;B7Z2E6;H0YB80;B0AZS6;P63104-2 P27348;P31946-2;P63104 YWHAQ;YWHAB;YWHAZ "14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta" 0 0 ;; ;; 157.66 8.46E-05 71420000 11281.4 9771.5 10797.8 10259.1 11958 9622.6 9931.4 9794.6 10649.1 10830.7 FALSE FALSE TRUE 9959.011393 10072.54833 11381.56173 10677.51044 11075.88216 9439.064937 10314.45742 10909.57767 10210.13959 10766.27851 0.925018926 0.935564533 1.057149108 0.99175499 1.028756794 0.876724945 0.95803368 1.013309999 0.948344368 1 13.39423203 -4.252841537 22.77940952 0.96807072 1.013310079 0.065755742 0.04994218 771.2670804 2043251.28 0.007207014 0.104239765 5.59E-05 4.252841537 0.045239359 TLETQPLAPDCCPS(ph)DQDPAPAHPSPHAS(ph)PMNK ddPTM_HeLa_CUDC101_4h_R1 1 TLETQPLAPDCCPSDQDPAPAHPSPHASPMNK 32 0 E9PMR3;E9PMG4;Q9BUR4 E9PMR3 WRAP53 Telomerase Cajal body protein 1 2 0 TLETQPLAPDCCPS(0.786)DQDPAPAHPS(0.409)PHAS(0.805)PMNK 76.267 3.35E-06 14558000 5434.1 5131.5 4987.2 5378.2 5961.6 5732.2 6002.7 5185.1 6016.9 1093.5 TRUE FALSE FALSE 4797.123036 5289.595433 5256.823117 5597.546243 5521.824645 5622.867835 6234.22615 5775.350825 5768.880835 1086.995813 4.413193663 4.866251891 4.836102451 5.149556395 5.079895044 5.172851419 5.735280737 5.313130698 5.307178523 1 10.08613067 -8.999817897 0.399087302 3.62E-13 5.461491511 0 1.345474131 0.128610906 0.031369979 0.297794535 0.060314836 1.00E-09 8.999817897 5.461491511 GIVVTAYS(ph)PLGSPDRPWAKPEDPSLLEDPR ddPTM_HeLa_CUDC101_4h_R1 1 GIVVTAYSPLGSPDRPWAKPEDPSLLEDPR 30 2 P15121;E9PCX2 P15121 AKR1B1 Aldose reductase 1 0 GIVVT(0.011)AY(0.188)S(0.61)PLGS(0.188)PDRPWAKPEDPS(0.002)LLEDPR 56.588 0.0020806 11410000 455.93 329.57 475.2 265.19 250.85 436.9 443.6 504.69 446.59 580.36 TRUE FALSE FALSE 402.4865765 339.7236611 500.8907494 276.0055944 232.3452953 428.5668604 460.7098006 562.1418696 428.1813712 576.9079929 0.69766164 0.588869742 0.868233333 0.478422206 0.402742375 0.742868648 0.798584534 0.974404717 0.742200449 1 9.172197441 -8.998860089 0.748387405 1.006297838 0.683599492 0.063921937 0.180515217 0.660887244 0.663018555 0.123144361 0.035707294 1.00E-09 8.998860089 -0.322698347 EPEMPGPREES(ph)EEEEDEDDEEEEEEEKEK ddPTM_HeLa_CUDC101_4h_R1 2 EPEMPGPREESEEEEDEDDEEEEEEEKEK 29 2 D6R9L5;H0Y8X0;A0A494C198;B4DFG0;H0Y993;P35659;A0A494C028 D6R9L5 DEK Protein DEK 1 0 EPEMPGPREES(1)EEEEDEDDEEEEEEEKEK;EPEMPGPREES(1)EEEEDEDDEEEEEEEKEK ; 48.204 0.012706 26161000 1877.92 1519.47 1238.79 1423.18 1781.97 1870.33 1732.98 1640.85 1853.74 2405.3 TRUE FALSE FALSE 1657.793064 1566.28307 1305.762735 1481.223432 1650.517623 1834.656571 1799.821619 1827.637731 1777.328053 2390.993169 0.693349143 0.655076347 0.5461173 0.619501323 0.69030629 0.767319872 0.752750632 0.764384338 0.743343007 1 11.22339429 -8.997925714 0.793933584 1.00130865 0.683634362 0.220451637 0.100771167 0.273056492 0.313917589 0.05109582 0.015652 1.00E-09 8.997925714 -0.317674288 EMTLDEWK ddPTM_HeLa_CUDC101_4h_R1 1 EMTLDEWK 8 0 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 0 137 0.026813 6017700 2901.7 2533.3 2265.1 2022.7 2377.2 2904.9 2428.3 2195.1 2025 2453.2 FALSE FALSE TRUE 2561.567125 2611.34797 2387.558158 2105.194449 2201.838692 2849.493872 2521.960344 2444.981311 1941.528643 2438.608257 1.050421738 1.070835368 0.979065887 0.863277012 0.902907913 1.168491849 1.034180187 1.002613398 0.79616258 1 11.2518423 -6.719999055 24.97690268 1.028002521 0.991839342 0 0.107045016 432.4789766 260662.5149 0.013162556 0.01861456 1.91E-07 6.719999055 -0.036163179 GDQCCYSHS(ph)PPTPR ddPTM_HeLa_CUDC101_4h_R1 2 GDQCCYSHSPPTPR 14 0 Q9NXH9-2;Q9NXH9 Q9NXH9-2 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase 1 0 GDQCCY(0.001)S(0.001)HS(0.977)PPT(0.021)PR;GDQCCYS(0.002)HS(0.756)PPT(0.242)PR ; 114.01 0.00047644 4215000 1913.38 1660.09 1687.01 1908 2077.75 1929.25 1932.82 1546.57 2013.51 845.34 TRUE FALSE FALSE 1689.096497 1711.235405 1778.214864 1985.816487 1924.478522 1892.452771 2007.369515 1722.625277 1930.512266 840.3118801 2.010082848 2.036428909 2.116136765 2.363189828 2.290195542 2.252083798 2.388838671 2.049983248 2.297375904 1 9.71478107 -8.997259588 0.412059766 0.720284987 2.302564421 0 0.415621529 0.248873105 0.064963273 0.170039188 0.034596303 1.01E-09 8.997259588 1.582279434 ENAEVDGDDDAEEMEAK ddPTM_HeLa_CUDC101_4h_R1 6 ENAEVDGDDDAEEMEAK 17 0 P05198 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 0 0 ;;;;; ;;;;; 362.61 2.88E-245 659405300 14815.2 11894.3 11957.6 11502.5 11770.9 12403.8 10843.7 10336.6 13329.9 13541 FALSE FALSE TRUE 13078.58471 12260.74928 12604.06403 11971.62167 10902.58416 12167.21818 11261.94514 11513.27676 12780.43588 13460.45753 0.971630027 0.910871659 0.936377088 0.889391883 0.809971291 0.903923076 0.836668822 0.85534067 0.949480049 1 13.71643983 -6.751747687 0.691246723 0.993912465 0.848177067 0.718964845 0.030385979 0.178831085 0.174423673 0.006093083 0.010420349 1.77E-07 6.751747687 -0.145735398 GFGFVT(ph)FDDHDPVDK ddPTM_HeLa_CUDC101_4h_R1 1 GFGFVTFDDHDPVDK 15 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 GFGFVT(1)FDDHDPVDK 86.455 0.020211 3314200 2669.2 2027.7 2573.6 1958.8 2598.2 2467.9 2316.6 1872.5 2598.4 2720 TRUE FALSE FALSE 2356.320422 2090.171034 2712.736601 2038.688331 2406.535962 2420.828919 2405.952038 2085.657831 2491.292852 2703.821319 0.871477862 0.773043329 1.00329729 0.75400261 0.890049925 0.895336131 0.889833962 0.771374135 0.921397 1 11.4007841 -8.99680913 0.626019033 1.010710678 0.856356823 0.209290086 0.074845061 0.73798586 0.489645062 0.061163685 0.015236849 1.01E-09 8.99680913 -0.154353856 S(ph)PS(ph)PAPPPR ddPTM_HeLa_CUDC101_4h_R1 2 SPSPAPPPR 9 0 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 S(1)PS(1)PAPPPR;S(1)PS(1)PAPPPR ; 136.49 0.022469 704500000 9282.6 8003.8 8079.5 7433.3 8314.8 8144 7953.5 7729.8 8530.2 8765.4 TRUE FALSE FALSE 8194.5077 8250.387591 8516.302209 7736.462103 7701.433769 7988.666769 8260.269159 8609.729187 8178.581546 8713.263011 0.940463715 0.946876914 0.977395288 0.887894936 0.883874819 0.916839852 0.948010998 0.988117675 0.938635909 1 13.08899738 -8.993880978 0.490862809 1.010021298 0.930432478 0.01385928 0.036822616 1.191352797 0.454554449 0.045115155 0.009655943 1.01E-09 8.993880978 -0.07958882 ENDEEMK(ac)AAK(ac)EK ddPTM_HeLa_CUDC101_4h_R1 2 ENDEEMKAAKEK 12 2 O95696-2;O95696;J3KQ61 O95696-2 BRD1 Bromodomain-containing protein 1 0 2 ; ENDEEMK(1)AAK(1)EK;ENDEEMK(1)AAK(1)EK 198.49 7.55E-11 2134200 1104.4 958.74 941.04 994.39 1031.23 972.51 690.26 1170.47 989.95 1152.48 FALSE TRUE FALSE 974.9439062 988.277643 991.9154689 1034.945522 955.1582174 953.9609921 716.8835594 1303.711574 949.143842 1145.624998 0.851014868 0.8626537 0.865829107 0.903389438 0.833744218 0.832699176 0.625757609 1.137991556 0.828494354 1 10.16191916 -9.291923157 0.587497474 1.025029536 0.851710248 0 0.128518948 1.59713837 0.776973402 0.151812769 0.024816928 5.11E-10 9.291923157 -0.173319289 ENDEEMKAAK(ac)EK ddPTM_HeLa_CUDC101_4h_R1 1 ENDEEMKAAKEK 12 2 O95696-2;O95696;J3KQ61 O95696-2 BRD1 Bromodomain-containing protein 1 0 1 ENDEEMKAAK(1)EK 87.719 0.039569 3299500 1389.7 1770.6 2332.8 2046.1 2979.5 2386 2052.5 2957.7 2097.4 1594.1 FALSE TRUE FALSE 1226.801473 1825.150087 2458.918224 2129.548802 2759.708221 2340.491025 2131.665613 3294.392613 2010.944284 1584.618222 0.774193718 1.151791682 1.551741732 1.343887614 1.741560322 1.477006255 1.345223463 2.078981906 1.269040237 1 10.62991958 -6.893244384 2.725896777 0.893653996 1.575721432 0.54038657 0.238351468 0.107045287 1.616548085 0.033681523 0.045370375 1.28E-07 6.893244384 0.682067435 AQQCVSPS(ph)SSLCR ddPTM_HeLa_CUDC101_4h_R1 1 AQQCVSPSSSLCR 13 0 B9EGE7;Q8TCN5-2;Q8TCN5 B9EGE7 ZNF507 Zinc finger protein 507 1 0 AQQCVS(0.128)PS(0.822)S(0.038)S(0.011)LCR 85.271 0.023975 6271100 1434.1 1327.8 1289.1 1200 1560.9 1272.4 1126.1 1310.2 1549.6 689.72 TRUE FALSE FALSE 1265.996972 1368.707944 1358.792645 1248.941187 1445.755517 1248.13109 1169.534054 1459.347872 1485.724832 685.6175148 1.846506171 1.996314147 1.981852295 1.82162964 2.108691049 1.820448082 1.705811227 2.128516032 2.166987861 1 9.421260155 -8.992276935 0.622045263 0.93146744 1.939107925 0 0.380884404 0.220753859 0.144639247 0.118987143 0.029650874 1.02E-09 8.992276935 1.007640485 LLRDDEAHLQEDQGEEECFHDCS(ph)ASFEEEPGADKVENK ddPTM_HeLa_CUDC101_4h_R1 2 LLRDDEAHLQEDQGEEECFHDCSASFEEEPGADKVENK 38 2 Q99614 Q99614 TTC1 Tetratricopeptide repeat protein 1 1 0 LLRDDEAHLQEDQGEEECFHDCS(0.5)AS(0.5)FEEEPGADKVENK;LLRDDEAHLQEDQGEEECFHDCS(0.5)AS(0.5)FEEEPGADKVENK ; 41.591 0.016513 22429500 3230.3 2909.9 2946.29 3319.8 3998.4 3081.9 3328.4 2822.7 3151.7 524.91 TRUE FALSE FALSE 2851.649131 2999.55057 3105.575349 3455.195793 3703.445998 3023.117892 3456.777503 3144.024758 3021.785592 521.787812 5.465150901 5.748602212 5.951797413 6.621840745 7.097609244 5.793768699 6.624872072 6.025485238 5.791215361 1 9.027319436 -8.991180324 0.457593315 0.030731628 6.525741086 0.101694462 1.525767407 0.186062435 0.06093717 0.55335364 0.115727525 1.02E-09 8.991180324 6.495009458 TYS(ph)FEQPWPNAR ddPTM_HeLa_CUDC101_4h_R1 1 TYSFEQPWPNAR 12 0 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-5 Q5VWV2 PARD3 Partitioning defective 3 homolog 1 0 T(0.231)YS(0.769)FEQPWPNAR 115.37 0.0044037 21824000 1412 1098 979.19 1052.4 1535.4 1236.7 1394.6 1221.9 1463.2 1583.6 TRUE FALSE FALSE 1246.4875 1131.828079 1032.127973 1095.321421 1422.136601 1213.112008 1448.390189 1360.996157 1402.886277 1574.180677 0.791832551 0.718995027 0.655660426 0.695804133 0.903413834 0.770630732 0.920091455 0.8645743 0.891185045 1 10.62038542 -8.990532054 0.89518632 0.99456158 0.789584102 0.306937129 0.088214132 0.412202757 0.623040609 0.051423373 0.017701477 1.02E-09 8.990532054 -0.204977478 SQGSPEDS(ph)APQASPGPSK ddPTM_HeLa_CUDC101_4h_R1 1 SQGSPEDSAPQASPGPSK 18 0 Q9P107-2;Q9P107 Q9P107-2 GMIP GEM-interacting protein 1 0 S(0.087)QGS(0.137)PEDS(0.774)APQAS(0.002)PGPSK 112.91 0.00035497 14389000 1634.4 1418.3 1487.7 1302.1 1601.4 1421.3 1332.2 1417 1460.1 1257.9 TRUE FALSE FALSE 1442.81811 1461.996142 1568.129562 1355.205266 1483.267912 1394.191071 1383.5834 1578.305552 1399.91406 1250.417955 1.153868676 1.169205973 1.254084329 1.083801829 1.186217702 1.114980047 1.106496748 1.2622224 1.119556909 1 10.28819468 -8.990048004 0.703504754 0.994082326 1.16472745 0.220281312 0.065963903 0.432443681 0.377343323 0.041535503 0.011512322 1.02E-09 8.990048004 0.170645124 FEGLS(ph)PLQR ddPTM_HeLa_CUDC101_4h_R1 2 FEGLSPLQR 9 0 Q9Y3E2 Q9Y3E2 BOLA1 BolA-like protein 1 1 0 FEGLS(1)PLQR;FEGLS(1)PLQR ; 121.61 0.0053111 16405700 6353.5 5177.6 5176.3 5266.2 6300.1 6180.9 5135.4 4343 6495.5 6531.8 TRUE FALSE FALSE 5608.752361 5337.115719 5456.146435 5480.978398 5835.354175 6063.009631 5333.474098 4837.389565 6227.752741 6492.948563 0.863822084 0.821986447 0.840318752 0.844143203 0.898721762 0.933783715 0.821425589 0.745022006 0.959156334 1 12.66465807 -8.98932584 0.602182695 1.012994564 0.845964554 0.540185687 0.048678422 0.555703551 0.338252177 0.048895049 0.011923398 1.02E-09 8.98932584 -0.16703001 DSELS(ph)DTDSGCCLGQSESDK ddPTM_HeLa_CUDC101_4h_R1 1 DSELSDTDSGCCLGQSESDK 20 0 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 1 0 DS(0.198)ELS(0.792)DT(0.008)DS(0.001)GCCLGQSESDK 127.35 9.90E-07 0 1539.5 1278.3 1529.4 1347.4 1638.9 1603.3 1181 1203.3 1705.6 673.3 TRUE FALSE FALSE 1359.042144 1317.682908 1612.08399 1402.352796 1518.001612 1572.719724 1226.551566 1340.278808 1635.294446 669.2951817 2.030557191 1.968761981 2.408629308 2.095268029 2.268059974 2.349814801 1.832601816 2.002522721 2.443308261 1 9.386498818 -8.988631335 0.590129836 0.899330795 2.156277977 0 0.475107134 0.266843638 0.155075298 0.175009023 0.042073651 1.03E-09 8.988631335 1.256947182 YGGPNHIVGS(ph)PFK ddPTM_HeLa_CUDC101_4h_R1 1 YGGPNHIVGSPFK 13 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 0 YGGPNHIVGS(1)PFK 87.447 0.0033349 0 1123.6 1074.5 970.8 1028.7 992.44 1222.6 827.27 815.09 685.34 595.17 TRUE FALSE FALSE 991.8933113 1107.604071 1023.284385 1070.654832 919.2296784 1199.280942 859.178081 907.8765509 657.0899951 591.6299024 1.676543574 1.872123209 1.729602206 1.80966991 1.553724169 2.027079661 1.452222204 1.534534592 1.110643652 1 9.208551161 -8.988628484 0.737802244 0.983919595 1.715885561 0.708820149 0.165910051 0.283363469 0.276180879 0.118789821 0.034411039 1.03E-09 8.988628484 0.731965966 TLLLMS(ph)FTK ddPTM_HeLa_CUDC101_4h_R1 1 TLLLMSFTK 9 0 F8WE24;P48553-2;P48553 F8WE24 TRAPPC10 Trafficking protein particle complex subunit 10 1 0 TLLLMS(0.989)FT(0.011)K 96.19 0.021314 15261000 1876.2 2078.5 1479.2 1510.9 1480.5 1748.5 1287 1787.1 1836.9 1437 TRUE FALSE FALSE 1656.27468 2142.536121 1559.170026 1572.521033 1371.286465 1715.150276 1336.640021 1990.53624 1761.182205 1428.45266 1.159488674 1.499899984 1.091509764 1.100856246 0.959980336 1.200705017 0.935725809 1.39349122 1.232930046 1 10.48023751 -8.987947795 1.096115731 1.010458053 1.156930933 0 0.178787688 0.7807364 1.833536784 0.072822643 0.029699284 1.03E-09 8.987947795 0.14647288 HS(ph)S(ph)S(ph)SPKSKRR ddPTM_HeLa_CUDC101_4h_R1 1 HSSSSPKSKRR 11 3 A7MD48 A7MD48 SRRM4 Serine/arginine repetitive matrix protein 4 3 0 HS(1)S(1)S(0.978)S(0.022)PKSKRR 96.229 0.00071612 0 3127.7 2352.6 2435.1 2417.5 2666.1 2685.3 2339.5 2187.4 4269.1 4609.6 TRUE FALSE FALSE 2761.075747 2425.080817 2566.748872 2516.096099 2469.427115 2634.082377 2429.735299 2436.404774 4093.125891 4582.181894 0.602567906 0.5292415 0.56015866 0.549104369 0.538919487 0.574853299 0.530257278 0.531712802 0.893270059 1 12.16181901 -8.987498652 0.538245149 1.055409976 0.53512622 0.951084614 0.035626177 0.100149655 0.047171579 0.025990965 0.005882329 1.03E-09 8.987498652 -0.520283756 ENLATVEGNFASIDER ddPTM_HeLa_CUDC101_4h_R1 1 ENLATVEGNFASIDER 16 0 Q13561;Q13561-3;Q13561-2;H0YI98 Q13561 DCTN2 Dynactin subunit 2 0 0 95.195 0.033728 5137500 781.03 776.93 909.01 656.8 780.95 653.87 723.85 695.82 862.78 767.66 FALSE FALSE TRUE 689.4788474 800.8662924 958.1538302 683.5871429 723.3408744 641.3985192 751.769137 775.0293362 827.2158432 763.0939242 0.903530778 1.049498977 1.255617166 0.895809967 0.94790543 0.840523688 0.98515938 1.015640816 1.084028869 1 9.57571683 -4.516732219 24.81828179 0.969071288 1.008020494 0 0.113772717 1051.239187 4244609.219 0.015446208 0.062049242 3.04E-05 4.516732219 0.038949207 ENLELNGSILSAR ddPTM_HeLa_CUDC101_4h_R1 1 ENLELNGSILSAR 13 0 O43663-3 O43663-3 PRC1 Protein regulator of cytokinesis 1 0 0 86.114 0.021212 6179300 1683.7 1272.4 1317 1391 1264.2 1338 1316.7 1305.2 1415.1 1644.7 FALSE FALSE TRUE 1486.339238 1311.601136 1388.201004 1447.730992 1170.942485 1312.479879 1367.48556 1453.778692 1356.768979 1634.917251 0.909121998 0.802243132 0.849095575 0.885507197 0.716209021 0.802780617 0.836424938 0.889206283 0.829870122 1 10.6750019 -7.847067253 0.695731596 0.988609164 0.817937227 0.063742069 0.069608465 0.266873389 0.28809077 0.017418182 0.013640882 1.42E-08 7.847067253 -0.170671937 ENLSAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 ENLSAKR 7 1 U3KQ93;Q9UBT2-2;Q9UBT2 U3KQ93 UBA2 SUMO-activating enzyme subunit 2 0 1 ENLSAK(1)R 121.05 0.0026488 3799400 4457.2 2929.5 1943.6 3332.8 2382.5 3339.5 2672.8 2277.3 1692.6 1452.4 FALSE TRUE FALSE 3934.733773 3019.754423 2048.676895 3468.72599 2206.747722 3275.804601 2775.890791 2536.538627 1622.830312 1443.76106 2.725335848 2.091588772 1.418986113 2.402562367 1.528471561 2.268938186 1.922680191 1.756896412 1.1240297 1 10.49561628 -9.57935369 1.378366863 1.002867479 2.096456057 0.489436995 0.381542831 0.289563515 0.99057898 0.2904011 0.068572948 2.63E-10 9.57935369 1.093588578 GSSGPQPAKPCSGATPT(ph)PLLLVGDRSPVPS(ph)PGSSSPQLQVK ddPTM_HeLa_CUDC101_4h_R1 1 GSSGPQPAKPCSGATPTPLLLVGDRSPVPSPGSSSPQLQVK 41 2 Q8N3F8 Q8N3F8 MICALL1 MICAL-like protein 1 2 0 GSSGPQPAKPCS(0.01)GAT(0.086)PT(0.297)PLLLVGDRS(0.302)PVPS(0.483)PGS(0.274)S(0.274)S(0.274)PQLQVK 58.001 0.00030277 22861000 1582.4 1419.6 1044.1 1356.6 1456.7 1555.2 1348.3 1349.4 1594.8 1620.9 TRUE FALSE FALSE 1396.913471 1463.336193 1100.547204 1411.928012 1349.242143 1525.537151 1400.304383 1503.010242 1529.061669 1611.258815 0.866970258 0.908194376 0.683035645 0.876288774 0.837383871 0.946798328 0.869074769 0.93281739 0.948985759 1 10.65397254 -8.98703725 0.792125869 1.000215535 0.862671587 0.269939021 0.070269739 0.564695089 0.648252652 0.045552772 0.014099664 1.03E-09 8.98703725 -0.137543948 RIDFIPVS(ph)PAPS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 4 RIDFIPVSPAPSPTR 15 1 Q96E09 Q96E09 FAM122A Protein FAM122A 2 0 RIDFIPVS(0.996)PAPS(0.695)PT(0.309)R;RIDFIPVS(1)PAPS(0.832)PT(0.168)R;RIDFIPVS(1)PAPS(0.925)PT(0.075)R;RIDFIPVS(1)PAPS(0.886)PT(0.114)R ;;; 142.23 0.00076295 109600000 13856.9 12263.2 11305.2 10667.7 12080.1 11251.5 10840.6 13968.2 15158 15093.4 TRUE FALSE FALSE 12232.61519 12641.01466 11916.39331 11102.77492 11188.97509 11036.89638 11258.72557 15558.28343 14533.18082 15003.62379 0.815310712 0.842530767 0.794234345 0.740006219 0.74575151 0.735615378 0.750400419 1.036968378 0.968644711 1 13.87302337 -8.986798506 0.584617425 1.018087651 0.79366566 0.405116135 0.084973104 0.720851891 0.41034469 0.084011546 0.020103317 1.03E-09 8.986798506 -0.224421991 ADVPVEKYDGES(ph)DKEQFDDDQK ddPTM_HeLa_CUDC101_4h_R1 2 ADVPVEKYDGESDKEQFDDDQK 22 2 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 ADVPVEKY(0.017)DGES(0.983)DKEQFDDDQK;ADVPVEKY(0.002)DGES(0.998)DKEQFDDDQK ; 79.36 0.00058355 32696000 1472.7 1070.34 1171.48 1231.53 1431.73 1157.58 1163.44 1339.18 1240.08 2000.59 TRUE FALSE FALSE 1300.072338 1103.315907 1234.813752 1281.757117 1326.11413 1135.50109 1208.314271 1491.626838 1188.963378 1988.690402 0.653732897 0.554795209 0.620918043 0.644523208 0.666827843 0.570979318 0.607592951 0.750054828 0.597862481 1 10.95760298 -8.984682846 0.69240525 1.014843068 0.626203439 0 0.133317417 0.200072531 0.168651538 0.043433775 0.011946189 1.04E-09 8.984682846 -0.388639629 ENPVVVAEK(ac)IQR ddPTM_HeLa_CUDC101_4h_R1 1 ENPVVVAEKIQR 12 1 O76080 O76080 ZFAND5 AN1-type zinc finger protein 5 0 1 ENPVVVAEK(1)IQR 97.957 0.01476 1580600 277.57 253 287.55 338.1 282.5 301.19 244.86 508.17 275.44 297.02 FALSE TRUE FALSE 245.0336654 260.7946301 303.0958228 351.8891794 261.6605378 295.4453026 254.3043322 566.0180187 264.0862466 295.2533118 0.829909964 0.883291126 1.026561975 1.191821278 0.886223888 1.000650258 0.861308991 1.917059 0.894439575 1 8.205809432 -4.25858569 24.99988577 0.941275001 1.917059352 0.888959698 0.102178489 66.44351033 582050.5095 0.015413468 0.14357939 5.51E-05 4.25858569 0.975784351 ENPVVVGEK(ac)IQK ddPTM_HeLa_CUDC101_4h_R1 2 ENPVVVGEKIQK 12 1 Q6FIF0-2;Q6FIF0 Q6FIF0-2 ZFAND6 AN1-type zinc finger protein 6 0 1 ; ENPVVVGEK(1)IQK;ENPVVVGEK(1)IQK 197.07 7.82E-11 5374600 2762.9 2871.6 2991.8 2598.9 2954.6 2377.71 2522.97 3240.6 2656.83 3508.6 FALSE TRUE FALSE 2439.03705 2960.070592 3153.545758 2704.894375 2736.645044 2332.359143 2620.281798 3609.496805 2547.314343 3487.730691 0.699319204 0.848709621 0.904182701 0.775545653 0.784649185 0.66873258 0.751285587 1.034912705 0.730364403 1 11.76807293 -9.506511667 1.233395621 1.000914946 0.792710274 0 0.129604015 0.408452824 1.104294066 0.072190563 0.017136438 3.12E-10 9.506511667 -0.208204672 ENPVVVGEK(ac)IQKI ddPTM_HeLa_CUDC101_4h_R1 1 ENPVVVGEKIQKI 13 2 Q6FIF0-2;Q6FIF0 Q6FIF0-2 ZFAND6 AN1-type zinc finger protein 6 0 1 ENPVVVGEK(1)IQKI 139.46 0.0077028 399460 165.54 187.98 380.48 356.64 362 311.74 272.76 424.66 191.36 60.611 FALSE TRUE FALSE 146.1356521 193.771441 401.0498997 371.1853207 335.2959812 305.7940789 283.2804446 473.0015779 183.4720598 60.25048308 2.425468555 3.216097716 6.6563765 6.160702816 5.565033907 5.075379703 4.70171242 7.85058565 3.045155 1 5.912900904 -7.042907039 1.986065435 1.615421371 5.894818708 0.739929603 1.025162316 0.099483709 0.769859421 0.170398371 0.219418686 9.06E-08 7.042907039 4.279397337 ENPYYDSR ddPTM_HeLa_CUDC101_4h_R1 2 ENPYYDSR 8 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ; ; 191.17 8.33E-09 124752000 9880.1 7250.2 6362.5 7585.8 8177.1 7898.2 6930.5 6325.4 6764.3 6033.8 FALSE FALSE TRUE 8721.969655 7473.570068 6706.475996 7895.181713 7573.891624 7747.554994 7197.811707 7045.457968 6485.472691 5997.910689 1.454167977 1.246028902 1.118135355 1.316321986 1.262754985 1.291708963 1.200053165 1.17465203 1.08128864 1 12.55024432 -9.600522826 1.413170318 1.000728727 1.282153734 0.456663061 0.090856738 0.279025079 1.004028556 0.073507699 0.017182929 2.51E-10 9.600522826 0.281425007 DIEIS(ph)TEEEKDTGDLK ddPTM_HeLa_CUDC101_4h_R1 1 DIEISTEEEKDTGDLK 16 1 Q4G0J3;Q4G0J3-3 Q4G0J3 LARP7 La-related protein 7 1 0 DIEIS(0.851)T(0.148)EEEKDT(0.001)GDLK 69.258 0.018896 16469000 3026.2 2239 2769.3 2204.8 2788 2786.8 2416.6 2401 3075.2 3704.1 TRUE FALSE FALSE 2671.473423 2307.980936 2919.016735 2294.721274 2582.334794 2733.646433 2509.809072 2674.320135 2948.438954 3682.067848 0.725536175 0.626816515 0.792765602 0.623215369 0.701327325 0.742421527 0.681630316 0.726309304 0.80075628 1 11.8463005 -8.984260949 0.641026476 1.018999614 0.696555053 0.435058597 0.077306685 0.238767629 0.168372441 0.041659408 0.010737269 1.04E-09 8.984260949 -0.322444561 SPSSES(ph)SPQHPTPPARPR ddPTM_HeLa_CUDC101_4h_R1 1 SPSSESSPQHPTPPARPR 18 1 O14733;O14733-4;O14733-3;O14733-2 O14733 MAP2K7 Dual specificity mitogen-activated protein kinase kinase 7 1 0 S(0.193)PS(0.038)S(0.101)ES(0.334)S(0.334)PQHPTPPARPR 88 0.0033748 2609800 192.4 139.41 0 123.69 230.03 314.36 198.3 175.57 184.77 227.8 TRUE FALSE FALSE 169.8471637 143.7050569 0 128.7346128 213.0611452 308.3641068 205.9484974 195.5561791 177.1537024 226.4450355 0.750059118 0.634613413 0 0.568502695 0.940895634 1.361761392 0.909485593 0.863592256 0.782325398 1 7.8230171 -8.984198092 1.076798004 0.983937129 0.754739243 0.012185542 0.331375846 1.144289671 2.58908472 0.166123853 0.06709364 1.04E-09 8.984198092 -0.229197886 KPS(ph)PAASPATK ddPTM_HeLa_CUDC101_4h_R1 1 KPSPAASPATK 11 1 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 KPS(1)PAASPATK 104.81 0.018739 21483000 2847.1 1754.6 2849.2 2880 2221.9 2364.2 2743.1 2169.6 2693.7 2999.8 TRUE FALSE FALSE 2513.367254 1808.657146 3003.23637 2997.458848 2057.994864 2319.106824 2848.902286 2416.578494 2582.664546 2981.957056 0.8428583 0.606533599 1.007136023 1.00519853 0.690149061 0.777713019 0.955380051 0.810400166 0.866097163 1 11.54204377 -8.983480831 0.923736618 0.994906257 0.839986816 0.044058423 0.128947255 0.708185194 1.149622212 0.067123398 0.023932236 1.04E-09 8.983480831 -0.154919441 AEESIEDIY(ph)ANIPDLPK ddPTM_HeLa_CUDC101_4h_R1 2 AEESIEDIYANIPDLPK 17 0 S4R313;Q9NP74-2;Q9NP74 S4R313 PALMD Palmdelphin 1 0 AEESIEDIY(1)ANIPDLPK;AEESIEDIY(1)ANIPDLPK ; 220.53 4.09E-44 6641500 7089.1 5683.9 5549.8 5687.4 7932.8 3993.6 1381.19 778.42 4775.8 7089.2 TRUE FALSE FALSE 6258.126444 5859.014222 5849.838975 5919.356755 7347.613148 3917.428734 1434.462961 867.0321863 4578.939503 7047.033123 0.888051232 0.831415735 0.830113733 0.839978563 1.042653415 0.555897591 0.203555587 0.123035066 0.649768409 1 12.78280028 -4.944998216 2.526582738 0.925402242 0.141303162 0.854879496 0.114225398 0.049088312 0.619406468 0.01207386 0.045753311 1.14E-05 4.944998216 -0.78409908 down LNDPFQPFPGNDS(ph)PKEKDPEIFCDPFTSATTTTNK ddPTM_HeLa_CUDC101_4h_R1 1 LNDPFQPFPGNDSPKEKDPEIFCDPFTSATTTTNK 35 2 P42566;B1AUU8;P42566-2 P42566 EPS15 Epidermal growth factor receptor substrate 15 1 0 LNDPFQPFPGNDS(1)PKEKDPEIFCDPFTSATTTTNK 71.169 1.43E-06 32868000 1489.1 1265.1 1386.3 1554 1203.5 1182.8 1269 1182.2 1625 1032.4 TRUE FALSE FALSE 1314.549955 1304.076231 1461.247571 1617.378837 1114.720203 1160.240061 1317.945755 1316.776869 1558.016812 1026.259239 1.280914125 1.270708396 1.42385814 1.575994423 1.086197484 1.13055261 1.284223036 1.283084059 1.518151314 1 10.00317949 -8.982608291 0.77396593 0.99784711 1.292975193 0 0.205180559 0.548102208 0.597642935 0.094017724 0.02863837 1.04E-09 8.982608291 0.295128084 HGS(ph)PEFCGILGER ddPTM_HeLa_CUDC101_4h_R1 2 HGSPEFCGILGER 13 0 Q15464 Q15464 SHB SH2 domain-containing adapter protein B 1 0 HGS(1)PEFCGILGER;HGS(1)PEFCGILGER ; 189.33 1.76E-11 50604000 8212.5 8406.3 6324.9 6528.4 7921.7 7461.8 6772 6181.8 7276.2 6703.2 TRUE FALSE FALSE 7249.843199 8665.288139 6666.843226 6794.65637 7337.331973 7319.478597 7033.198308 6885.511124 6976.271956 6663.329068 1.088021187 1.300444275 1.000527388 1.019708962 1.101151076 1.098471728 1.055508176 1.033344002 1.046964946 1 12.70202743 -8.982475439 1.102288427 1.005925298 1.086886767 0.083257744 0.079737727 0.691724829 1.645043872 0.035615352 0.014664272 1.04E-09 8.982475439 0.080961469 RSPTDS(ph)DVSLDSEDSGAK ddPTM_HeLa_CUDC101_4h_R1 2 RSPTDSDVSLDSEDSGAK 18 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 RS(0.001)PT(0.013)DS(0.961)DVS(0.025)LDSEDSGAK;RS(0.099)PT(0.099)DS(0.8)DVS(0.001)LDSEDSGAK ; 236.68 6.45E-71 13558000 4006.9 3089.44 3639.09 3269.49 3850 3794.4 2954.67 3267.9 3833.8 4045.9 TRUE FALSE FALSE 3537.217256 3184.621985 3835.830213 3402.833934 3565.99317 3722.028142 3068.632612 3639.904527 3675.769141 4021.834807 0.879503367 0.791833115 0.953751309 0.846089931 0.886658289 0.925455251 0.762993201 0.905035811 0.913953287 1 11.97363811 -8.981988368 0.650371238 1.008033402 0.865980212 0.198231379 0.060675508 0.579706196 0.423179542 0.044812406 0.011720152 1.04E-09 8.981988368 -0.14205319 RQS(ph)LELQK ddPTM_HeLa_CUDC101_4h_R1 4 RQSLELQK 8 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 RQS(1)LELQK;RQS(1)LELQK;RQS(1)LELQK;RQS(1)LELQK ;;; 96.113 0.011944 35317500 11582.5 10170.5 10470.5 10527.1 10769 10686.1 9081.8 8223.5 12593.7 9121.2 TRUE FALSE FALSE 10224.81691 10483.84105 11036.5669 10956.44064 9974.592325 10482.28045 9432.088068 9159.629999 12074.58236 9066.946697 1.127702329 1.156270286 1.217230813 1.208393631 1.100104882 1.156098166 1.040271702 1.010222107 1.331714276 1 13.14640109 -8.981649946 0.882924619 1.003176991 1.129826008 0 0.119707091 0.50638944 0.743943101 0.03875647 0.013308244 1.04E-09 8.981649946 0.126649017 GVSQTGT(ph)PVCEEDGDAGLGIR ddPTM_HeLa_CUDC101_4h_R1 1 GVSQTGTPVCEEDGDAGLGIR 21 0 Q12888;Q12888-3;Q12888-2 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GVS(0.004)QT(0.053)GT(0.943)PVCEEDGDAGLGIR 103.2 0.0006123 2883200 524.55 409.69 352.59 506.04 443.23 539.14 445.79 451.39 569.38 576.78 TRUE FALSE FALSE 463.0630442 422.3120633 371.6520819 526.6784985 410.5338059 528.8568028 462.9842696 502.774413 545.9099154 573.3492869 0.807645627 0.736570312 0.648212338 0.918599727 0.716027412 0.922398989 0.807508233 0.876907715 0.952141963 1 9.163270493 -8.980557039 0.874381753 0.995720088 0.803411618 0.393047101 0.084427045 0.409692858 0.589133637 0.04746781 0.016178961 1.05E-09 8.980557039 -0.19230847 NTADHDESPPRT(ph)PTGNAPSSESDIDISS(ph)PNVSHDESIAK ddPTM_HeLa_CUDC101_4h_R1 1 NTADHDESPPRTPTGNAPSSESDIDISSPNVSHDESIAK 39 1 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 2 0 NT(0.026)ADHDES(0.225)PPRT(0.248)PT(0.251)GNAPS(0.251)S(0.251)ES(0.251)DIDIS(0.231)S(0.262)PNVS(0.006)HDESIAK 49.193 0.0060349 16265000 1398.7 1165.8 978.49 971.73 1320.9 1111.4 1395.1 1406.4 1155.9 1724.4 TRUE FALSE FALSE 1234.746506 1201.716916 1031.390129 1011.36135 1223.459839 1090.201897 1448.909474 1566.498891 1108.253313 1714.143192 0.720328682 0.701059819 0.601694266 0.590009839 0.713744245 0.636003982 0.845267467 0.913866997 0.646534851 1 10.74327192 -8.980446893 0.781304189 1.0013821 0.708384405 0 0.143960203 0.407809321 0.454713258 0.069615243 0.021440451 1.05E-09 8.980446893 -0.292997695 GRS(ph)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ddPTM_HeLa_CUDC101_4h_R1 6 GRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFK 32 1 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2;M0R0K8;M0QYI8;M0QYZ0 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(0.994)PQPPAEEDEDDFDDT(0.006)LVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(0.969)PQPPAEEDEDDFDDT(0.026)LVAIDT(0.002)Y(0.002)NCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ;;;;; 160.43 5.34E-18 404607700 15043.78 14150.51 13717.21 13200.7 15367.01 13678.81 13702.61 12934.74 15466.17 6164.56 TRUE FALSE FALSE 13280.37091 14586.47044 14458.80386 13739.0816 14233.41629 13417.90949 14231.12426 14407.17852 14828.64793 6127.892923 2.167200224 2.380340294 2.359506611 2.242056409 2.322726011 2.189644901 2.322351979 2.351081962 2.419860809 1 12.58117537 -8.980018166 0.589968722 0.884390011 2.325376392 0 0.441538237 0.112373155 0.065549757 0.084350638 0.020482139 1.05E-09 8.980018166 1.440986382 NSTLPMEETS(ph)PCSSR ddPTM_HeLa_CUDC101_4h_R1 2 NSTLPMEETSPCSSR 15 0 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 NSTLPMEET(0.088)S(0.895)PCS(0.015)S(0.001)R;NSTLPMEET(0.226)S(0.763)PCS(0.01)S(0.001)R ; 180.56 1.68E-08 21361000 6848.5 6219.6 6889.8 5959.9 7350.5 6223.6 5070.5 3712.8 7477.3 4454.9 TRUE FALSE FALSE 6045.729212 6411.218504 7262.283429 6202.970483 6808.268259 6104.895199 5266.070884 4135.450144 7169.082529 4428.402057 1.365216874 1.44774987 1.639933171 1.400724325 1.537409696 1.378577446 1.18915826 0.933847038 1.618887002 1 12.1125705 -8.978461509 0.872673094 1.008298911 1.372824874 0 0.262395095 0.513221597 0.735204871 0.11256417 0.038388054 1.05E-09 8.978461509 0.364525962 EPAITSQNS(ph)PEAR ddPTM_HeLa_CUDC101_4h_R1 4 EPAITSQNSPEAR 13 0 E5RIS7;A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193 E5RIS7 TCEA1 Transcription elongation factor A protein 1 1 0 EPAIT(0.001)S(0.001)QNS(0.999)PEAR;EPAIT(0.001)S(0.007)QNS(0.992)PEAR;EPAITS(0.001)QNS(0.999)PEAR;EPAITSQNS(1)PEAR ;;; 214.89 4.03E-24 554367000 5943.06 4876.73 4921.18 4464.39 4741.33 4773.73 4663.84 4133.65 5525.56 7061.9 TRUE FALSE FALSE 5246.423516 5026.976271 5187.233877 4646.467121 4391.571532 4682.679054 4843.725871 4604.208007 5297.794078 7019.895505 0.747364902 0.716104145 0.738933204 0.661899756 0.625589302 0.667058228 0.689999711 0.65587985 0.754682755 1 12.77723384 -8.978164787 0.359554803 1.092192176 0.648566661 0.370896777 0.079513229 0.297317902 0.059546874 0.05263583 0.011015939 1.05E-09 8.978164787 -0.443625515 NCPS(ph)PVLIDCPHPNCNKK ddPTM_HeLa_CUDC101_4h_R1 1 NCPSPVLIDCPHPNCNKK 18 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 NCPS(1)PVLIDCPHPNCNKK 104.16 0.0016605 56941000 3766.2 3513.8 3919.5 3582.4 3708.2 3199.6 3173.2 3715 3372.1 438.06 TRUE FALSE FALSE 3324.731745 3622.056013 4131.400026 3728.505756 3434.653474 3138.572961 3295.591387 4137.900583 3233.100611 435.4543996 7.635085896 8.317876719 9.487560648 8.562333414 7.887515838 7.207581238 7.568166471 9.502488864 7.424659421 1 8.766377839 -8.978055243 0.624346625 0.493989021 8.386675467 0.169231433 2.083560874 0.178719288 0.118918664 0.753577952 0.191530057 1.05E-09 8.978055243 7.892686446 T(ph)GSCSELDACPSK ddPTM_HeLa_CUDC101_4h_R1 1 TGSCSELDACPSK 13 0 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;Q9H1H9;A0A1B0GUA8;H0Y9Z7 Q9H1H9-3;Q9H1H9 KIF13A Kinesin-like protein KIF13A 1 0 T(0.717)GS(0.245)CS(0.038)ELDACPSK 189.99 1.11E-10 100900000 5389.1 4305.4 5048.5 5234.3 5473.2 5200.8 5344.2 5343.8 5024.8 652.47 TRUE FALSE FALSE 4757.397867 4438.044271 5321.437181 5447.777379 5069.45294 5101.603405 5550.327584 5952.116592 4817.675617 648.5890794 7.334995328 6.842613315 8.204635801 8.399428161 7.816124417 7.865694269 8.557540915 9.177022525 7.427932061 1 9.341160922 -8.977519511 0.480743025 6.85E-16 8.43555204 0.168651411 1.989713384 0.156537239 0.057560804 0.620396948 0.134155051 1.05E-09 8.977519511 8.43555204 EPPPLLEVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 EPPPLLEVSPR 11 0 Q9ULI4 Q9ULI4 KIF26A Kinesin-like protein KIF26A 1 0 EPPPLLEVS(1)PR;EPPPLLEVS(1)PR ; 96.23 0.017465 8400600 928.53 752.2 767.24 876.84 915.27 987.59 909.93 805.98 665.07 679.34 TRUE FALSE FALSE 819.689121 775.3743904 808.7193152 912.6013252 847.7523556 968.7533662 945.0263049 897.7295053 637.6555331 675.2992555 1.213816118 1.148193759 1.197571756 1.35140283 1.255372857 1.434554175 1.39941855 1.329380268 0.944256236 1 9.399383157 -8.975778647 0.062264614 0.232785847 1.972801448 0.851994759 0.059387186 19.0139635 0.35636221 6.111875933 3.893751802 1.06E-09 8.975778647 1.740015602 SS(ph)TQTLEDSWR ddPTM_HeLa_CUDC101_4h_R1 1 SSTQTLEDSWR 11 0 H0YBE8;H3BLZ3;Q8IX03;Q8IX03-2;H0YAU4 H0YBE8 WWC1 Protein KIBRA 1 0 S(0.025)S(0.84)T(0.133)QT(0.002)LEDSWR 135.81 0.0016379 2500300 1935.8 2010.9 1716.1 1364.6 2051.4 1686.3 1674.4 1616.7 1166.6 898.23 TRUE FALSE FALSE 1708.888458 2072.853445 1808.877557 1420.254286 1900.072309 1654.136637 1738.982169 1800.738593 1118.512254 892.887288 1.913890456 2.321517479 2.025874465 1.590631097 2.128009139 1.852570486 1.947594273 2.016759133 1.252691431 1 9.802334261 -8.975249623 0.738465795 0.979834436 1.976861125 0.74797324 0.194317771 0.239216023 0.234851935 0.136102915 0.04007319 1.06E-09 8.975249623 0.997026688 GPGS(ph)PPRT(ph)PPAPGPPSFEEQLR ddPTM_HeLa_CUDC101_4h_R1 2 GPGSPPRTPPAPGPPSFEEQLR 22 1 A0A6E1YH78;Q6ZTN6-2;Q6ZTN6;Q6ZTN6-3 A0A6E1YH78 ANKRD13D Ankyrin repeat domain-containing protein 13D 2 0 GPGS(1)PPRT(0.999)PPAPGPPS(0.001)FEEQLR;GPGS(1)PPRT(1)PPAPGPPSFEEQLR ; 68.207 0.0057534 37702000 5016.4 3809.4 4404.9 4103.7 4729.1 4378.5 3915.8 5040.7 4452 4913.5 TRUE FALSE FALSE 4428.385196 3926.763099 4643.042218 4271.066624 4380.243715 4294.987408 4066.833718 5614.512913 4268.486676 4884.274283 0.906661858 0.803960398 0.950610459 0.874452657 0.896805433 0.879350167 0.832638276 1.149508113 0.873924442 1 12.2539285 -8.975188367 0.945447564 0.996292459 0.90539014 0 0.096665318 0.778378593 1.332250327 0.043387404 0.015920889 1.06E-09 8.975188367 -0.090902319 ISDYFEYQGGNGSS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 2 ISDYFEYQGGNGSSPVR 17 0 B3KRP1;Q9UKI8-5;Q9UKI8;Q9UKI8-2;C9JWT6;Q9UKI8-4 B3KRP1 TLK1 Serine/threonine-protein kinase tousled-like 1 1 0 ISDYFEYQGGNGS(0.011)S(0.989)PVR;ISDYFEYQGGNGS(0.153)S(0.847)PVR ; 196.65 1.25E-24 102160000 3890.62 3104.11 3211.68 2998.36 3908.48 4111.72 3124.15 3032.15 3483.99 3728.85 TRUE FALSE FALSE 3434.567421 3199.74395 3385.313136 3120.646081 3620.159217 4033.295792 3244.649512 3377.3177 3340.378458 3706.670634 0.926590938 0.86323935 0.913302926 0.84190002 0.976660614 1.088118203 0.875354147 0.911145886 0.901180274 1 11.85590821 -8.975113932 0.967578311 0.996701945 0.926050245 0 0.071890129 0.800759501 1.441597091 0.034877719 0.013051166 1.06E-09 8.975113932 -0.070651699 DTYS(ph)DRSGSSS(ph)PDSEITELK ddPTM_HeLa_CUDC101_4h_R1 1 DTYSDRSGSSSPDSEITELK 20 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 DT(0.111)Y(0.076)S(0.596)DRS(0.14)GS(0.158)S(0.086)S(0.833)PDSEITELK 78.451 0.0051139 8268000 3825.8 3330.6 2937.2 2784.5 3234.3 3331.6 3194.6 3095.7 3637.4 4846 TRUE FALSE FALSE 3377.345524 3433.211838 3095.993917 2898.063946 2995.712133 3268.055281 3317.816792 3448.101975 3487.464832 4817.175776 0.701104896 0.712702213 0.642698971 0.601610587 0.621881424 0.678417279 0.688747296 0.715793265 0.72396462 1 12.23397185 -8.974255202 0.556789552 1.035195454 0.656392554 0.248343071 0.090884151 0.220101843 0.112772785 0.04221157 0.009912865 1.06E-09 8.974255202 -0.3788029 RLS(ph)DCESTDVK ddPTM_HeLa_CUDC101_4h_R1 1 RLSDCESTDVK 11 1 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 0 RLS(0.991)DCES(0.008)T(0.001)DVK 118.73 0.0092396 6950500 2849.9 2440.1 2542.2 2807.4 2736.1 2782 2730.1 2411.2 2379.6 1736.4 TRUE FALSE FALSE 2515.839042 2515.276589 2679.639022 2921.897907 2534.263354 2728.937985 2835.400872 2685.681262 2281.511881 1726.071816 1.457551777 1.45722592 1.552449323 1.692802049 1.468225905 1.581010686 1.642689977 1.555949896 1.321794296 1 10.75327678 -8.974051218 0.394582315 0.862681235 1.608063511 0.617650964 0.115527609 0.34796933 0.084173317 0.109197081 0.022760705 1.06E-09 8.974051218 0.745382276 EGQPSPADEKGNDSDGEGES(ph)DDPEK ddPTM_HeLa_CUDC101_4h_R1 1 EGQPSPADEKGNDSDGEGESDDPEK 25 1 O75351;K7EKZ3 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 1 0 EGQPS(0.001)PADEKGNDS(0.402)DGEGES(0.598)DDPEK 73.361 0.00022233 200380000 2121.9 1448.7 1829.2 1994.8 1850 1930.6 1771.8 1943.1 2113.2 2215.8 TRUE FALSE FALSE 1873.174099 1493.33273 1928.092085 2076.156566 1713.529186 1893.777022 1840.13892 2164.29465 2026.093002 2202.620323 0.850429863 0.677980092 0.875362887 0.942584859 0.77795032 0.859783687 0.835431736 0.982599964 0.919855765 1 11.10500512 -8.973161414 0.949283614 0.993905075 0.84818774 0.200387478 0.08212168 0.459598364 0.793975407 0.04107129 0.015155172 1.06E-09 8.973161414 -0.145717334 ENTAEALPEGFFDDPEVDAR ddPTM_HeLa_CUDC101_4h_R1 1 ENTAEALPEGFFDDPEVDAR 20 0 Q96NB3 Q96NB3 ZNF830 Zinc finger protein 830 0 0 92.38 0.0087106 2716800 1172.1 727.31 1026 834.38 1011.2 793.28 957.33 1176.1 1087.2 1040.2 FALSE FALSE TRUE 1034.708215 749.717559 1081.468663 868.4096229 936.6057906 778.1495057 994.2545388 1309.98247 1042.385156 1034.012844 1.000672497 0.725056331 1.045894806 0.839844135 0.905797056 0.752553037 0.961549505 1.266891874 1.008096913 1 10.01403839 ENTEFTDHELQEWYK ddPTM_HeLa_CUDC101_4h_R1 2 ENTEFTDHELQEWYK 15 0 P37235;E9PC71 P37235 HPCAL1 Hippocalcin-like protein 1 0 0 ; ; 122.16 0.00081261 22762000 8209.2 7293.3 7475.3 6388.7 7346.5 7060.5 6438 7237.9 6339 6384.5 FALSE FALSE TRUE 7246.93002 7517.997928 7879.43733 6649.2588 6804.563331 6925.832726 6686.315817 8061.833279 6077.703737 6346.52471 1.141873758 1.184584993 1.241535752 1.047700766 1.072171565 1.091279565 1.053539712 1.270275253 0.957642807 1 12.63175109 -9.125662408 0.924056915 1.001293613 1.132615918 0.408963506 0.074368794 0.53976125 0.844018952 0.045927701 0.013928314 7.49E-10 9.125662408 0.131322304 SDSDLLTCS(ph)PTEDATMGSR ddPTM_HeLa_CUDC101_4h_R1 2 SDSDLLTCSPTEDATMGSR 19 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.01)DSDLLT(0.057)CS(0.911)PT(0.019)EDAT(0.001)MGS(0.002)R;SDSDLLT(0.143)CS(0.786)PT(0.07)EDATMGSR ; 120.92 5.63E-05 6914800 2063 1787.66 1943.83 1781.92 2287 2033.11 1890.99 1430.65 2397.5 956.88 TRUE FALSE FALSE 1821.178267 1842.735686 2048.91933 1854.5944 2118.292566 1994.331814 1963.926118 1593.509413 2298.674035 951.1884352 1.914634577 1.937298244 2.15406249 1.949765505 2.226995712 2.09667374 2.064707733 1.675282577 2.416633708 1 9.893587364 -8.973094643 0.568604205 0.89940035 2.047592008 0 0.460790747 0.253565833 0.136386236 0.148871697 0.035504576 1.06E-09 8.973094643 1.148191658 NSPFQIPPPS(ph)PDSK ddPTM_HeLa_CUDC101_4h_R1 3 NSPFQIPPPSPDSK 14 0 Q86W92-4;Q86W92;Q86W92-3;F5GZP6;Q86W92-2 Q86W92-4;Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 NSPFQIPPPS(0.826)PDS(0.174)K;NSPFQIPPPS(0.917)PDS(0.083)K;NSPFQIPPPS(0.914)PDS(0.086)K ;; 114.4 0.0025095 96202000 27195.8 24035.6 21754.8 23564.5 25020.3 21245.5 20877.9 22558.2 25273.3 26827.9 TRUE FALSE FALSE 24007.94955 24776.10835 22930.93029 24525.56216 23174.60232 20840.27748 21683.1676 25126.1343 24231.52388 26668.32646 0.900242075 0.929046237 0.859856367 0.91965134 0.868993499 0.781461766 0.813068178 0.942171394 0.908625591 1 14.70283967 -8.972867779 0.238818538 1.066803579 0.834642666 0.23206546 0.053068322 2.747018475 0.268081382 0.201044619 0.051876821 1.06E-09 8.972867779 -0.232160913 TS(ph)PSGGTWSSVVSGVPR ddPTM_HeLa_CUDC101_4h_R1 1 TSPSGGTWSSVVSGVPR 17 0 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHH4;A0A5F9ZHX3 Q99700 ATXN2 Ataxin-2 1 0 T(0.395)S(0.591)PS(0.01)GGT(0.002)WS(0.002)S(0.001)VVSGVPR 109.14 0.0011595 55424000 2072.2 1987.1 1676.8 1549.2 2325.6 2029.8 1768 1711.4 2298.6 1659 TRUE FALSE FALSE 1829.299857 2048.320196 1767.45288 1612.383072 2154.045121 1991.084947 1836.192352 1906.218858 2203.850735 1649.132194 1.109249982 1.242059432 1.071747242 0.977716085 1.306168862 1.207353148 1.11342945 1.15589209 1.336369966 1 10.68749133 -8.972802362 0.32975629 0.948146265 1.169209166 0 0.136884383 2.618704269 0.445621993 0.21971612 0.047318137 1.06E-09 8.972802362 0.221062901 TEPSS(ph)PLSDPSDIIR ddPTM_HeLa_CUDC101_4h_R1 2 TEPSSPLSDPSDIIR 15 0 Q9ULJ3-2;Q9ULJ3 Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 TEPS(0.041)S(0.957)PLS(0.001)DPSDIIR;TEPS(0.151)S(0.836)PLS(0.013)DPSDIIR ; 164.93 2.74E-05 36332200 5086.3 4111 4037.2 4009 4565.1 4389.9 4388.3 4097.3 4905.9 6215.5 TRUE FALSE FALSE 4490.091624 4237.655037 4255.463244 4172.504348 4228.341668 4306.169972 4557.558201 4563.72007 4703.676726 6178.52993 0.726724913 0.68586785 0.688750122 0.675323159 0.684360473 0.696957047 0.737644432 0.738641736 0.761293832 1 12.5930479 -8.972481429 0.640139692 1.018023407 0.69752909 0.312604309 0.075499161 0.14009574 0.099020618 0.024218521 0.006321975 1.07E-09 8.972481429 -0.320494317 YDGES(ph)DKEQFDDDQK ddPTM_HeLa_CUDC101_4h_R1 1 YDGESDKEQFDDDQK 15 1 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 Y(0.009)DGES(0.991)DKEQFDDDQK 73.168 0.018756 73046000 5464.6 3856.2 4179.4 3864.9 3072.8 4279 3934.7 3469.1 4422 10129 TRUE FALSE FALSE 4824.047872 3975.004951 4405.351006 4022.527328 2846.125666 4197.385204 4086.462697 3864.008321 4239.723288 10068.75226 0.479110792 0.394786251 0.437527004 0.399506039 0.282669152 0.416872428 0.405855919 0.383762379 0.421077327 1 13.29759729 -8.972438515 0.493366689 1.091746757 0.367852861 0.02758289 0.182870698 0.157243766 0.061408559 0.05419325 0.01192038 1.07E-09 8.972438515 -0.723893896 T(ph)TGTPPDSSLVTYELHSRPEQDK ddPTM_HeLa_CUDC101_4h_R1 1 TTGTPPDSSLVTYELHSRPEQDK 23 1 Q13561;Q13561-3;Q13561-2;H0YI98;F8VW18;F8W1I6 Q13561 DCTN2 Dynactin subunit 2 1 0 T(0.47)T(0.47)GT(0.061)PPDSSLVTYELHSRPEQDK 105.61 9.05E-06 33512000 7898.8 6180.8 6680.8 6751.3 6535.2 6253.4 6181.9 5945.4 6954.4 8316.5 TRUE FALSE FALSE 6972.914638 6371.223122 7041.984256 7026.647196 6053.111316 6134.126814 6420.337954 6622.200304 6667.736688 8267.033088 0.843460352 0.770678314 0.851815177 0.84995997 0.732198753 0.74199858 0.776619361 0.801037111 0.806545301 1 13.01315395 -8.970621485 0.31188365 1.076585031 0.759988093 0.069814913 0.070506403 0.883606736 0.135805013 0.102799692 0.022671903 1.07E-09 8.970621485 -0.316596939 AKSPQPPVEEEDEHFDDT(ph)VVCLDTYNCDLHFK ddPTM_HeLa_CUDC101_4h_R1 1 AKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK 32 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;Q5RI18;A0A1W2PRI6 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 AKS(0.06)PQPPVEEEDEHFDDT(0.924)VVCLDT(0.014)Y(0.003)NCDLHFK 60.348 0.00036843 10679000 991.69 969.79 822.18 869.24 1067.8 1174 791.76 840.47 1090 424.22 TRUE FALSE FALSE 875.4456015 999.6680804 866.6295378 904.6913644 989.0305214 1151.607906 822.2984484 936.1457075 1045.069739 421.6967206 2.076007611 2.37058538 2.05510144 2.145360209 2.345359765 2.730891301 1.949975915 2.219950172 2.478249623 1 8.720061992 -8.96998846 0.50626587 0.823014476 2.29830475 0 0.500434301 0.357841965 0.148221299 0.254679546 0.056877352 1.07E-09 8.96998846 1.475290274 EPAVLELEGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EPAVLELEGKK 11 1 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 0 1 ; EPAVLELEGK(1)K;EPAVLELEGK(1)K 152.54 0.0001248 721650 676.53 320.18 283.03 305.354 727.37 654.34 460.91 569.29 501.1 409.35 FALSE TRUE FALSE 597.228179 330.0443663 298.3314579 317.807656 673.7133642 641.8595547 478.6874531 634.0956725 480.4444459 406.915168 1.467697019 0.811088876 0.733153938 0.781016981 1.655660485 1.57737928 1.176381444 1.558299425 1.18069928 1 8.668584248 -5.744069409 24.99753154 1.123720138 1.475494446 0.433012015 0.253725275 288.2063084 414762.1106 0.045280391 0.090389408 1.80E-06 5.744069409 0.351774308 TSSS(ph)SPANSDVEIDGIGR ddPTM_HeLa_CUDC101_4h_R1 1 TSSSSPANSDVEIDGIGR 18 0 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 T(0.012)S(0.073)S(0.042)S(0.437)S(0.437)PANSDVEIDGIGR 265.93 5.24E-71 21909000 1968.4 1762.2 1469.6 1470.3 1723.1 1969.7 1805.5 1139.2 2041.8 2194 TRUE FALSE FALSE 1737.667136 1816.491293 1549.051021 1530.265189 1595.990346 1932.131254 1875.13874 1268.881923 1957.63614 2180.94999 0.796747813 0.832889934 0.710264347 0.701650747 0.731786769 0.885912682 0.859780714 0.581802393 0.897607074 1 11.09074097 -8.967732003 0.492187734 1.034962973 0.755076373 0.409308832 0.088154784 0.809176841 0.315158925 0.107641024 0.023781177 1.08E-09 8.967732003 -0.279886599 SSATLWNS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 SSATLWNSPSR 11 0 Q3KQU3-4;Q3KQU3;C9JIR3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 SSATLWNS(0.9)PS(0.1)R 132.31 0.0018259 74329000 4212.4 3868 3305.6 3824.6 4459.9 3602.2 3978.1 2651.4 3528.7 3067 TRUE FALSE FALSE 3718.628858 3987.168495 3484.310735 3980.583719 4130.902062 3533.494037 4131.53665 2953.224659 3383.245492 3048.757348 1.219719523 1.307801193 1.142862595 1.30564137 1.35494616 1.158994841 1.355154307 0.96866504 1.109712944 1 11.57400561 -8.967570663 0.713104688 0.993404742 1.236913843 0.236089208 0.116372622 0.563087143 0.511682704 0.077097534 0.0221992 1.08E-09 8.967570663 0.243509101 ASSHSSQTQGGGS(ph)VTK ddPTM_HeLa_CUDC101_4h_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 ASSHSSQT(0.001)QGGGS(0.955)VT(0.044)K 60.454 0.037242 1295500 1205.6 505.02 773.77 997.88 924.15 568.32 724.27 367.8 1248.8 1647.8 TRUE FALSE FALSE 1064.281396 520.5790676 815.6023467 1038.57786 855.9772957 557.4802429 752.2053365 409.6688653 1197.323935 1637.998812 0.649744913 0.317814069 0.497926092 0.634052877 0.52257504 0.340342275 0.45922215 0.250103274 0.730967524 1 10.6777186 -8.962382772 0.234743107 1.308140656 0.30373294 0.570761788 0.139108583 1.659435984 0.158593526 0.521170175 0.137423615 1.09E-09 8.962382772 -1.004407717 FSLS(ph)PSLGPQASR ddPTM_HeLa_CUDC101_4h_R1 2 FSLSPSLGPQASR 13 0 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 1 0 FS(0.012)LS(0.942)PS(0.045)LGPQASR;FS(0.086)LS(0.634)PS(0.28)LGPQASR ; 139.74 0.00076402 71578000 3958.5 3618 3389.4 3662.8 4085.6 3441.7 3004 3315.5 2513.4 2488.8 TRUE FALSE FALSE 3494.490631 3729.466292 3572.641216 3812.184816 3784.213428 3376.055307 3119.865286 3692.923118 2409.796588 2473.996507 1.412488102 1.507466272 1.444076904 1.540901455 1.529595299 1.364616036 1.261062931 1.492695365 0.974050117 1 11.27262775 -8.960686258 0.706596743 0.987139407 1.446655155 0.827517693 0.082906066 0.260764781 0.23266504 0.06702106 0.019294842 1.09E-09 8.960686258 0.459515748 EPEDEGEDDD ddPTM_HeLa_CUDC101_4h_R1 2 EPEDEGEDDD 10 0 P39687 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 0 ; ; 162.5 0.00025746 70419000 20552.7 12028.9 18237.7 17967.1 14180.4 14544.3 14401.1 8152.7 18635.4 23060 FALSE FALSE TRUE 18143.54366 12399.49615 19223.68523 18699.876 13134.34014 14266.89171 14956.55525 9080.770414 17867.24092 22922.83809 0.791505118 0.540923253 0.838625878 0.815774902 0.57298054 0.622387666 0.652473973 0.396145119 0.779451517 1 14.48449806 -6.358449005 0.091111577 1.407658723 3.10E-13 0.445822539 0.124421495 9.585940977 0.393051492 2.3710879 3.566889357 4.38E-07 6.358449005 -1.407658723 LSTTPS(ph)PTSSLHEDGVEDFRR ddPTM_HeLa_CUDC101_4h_R1 1 LSTTPSPTSSLHEDGVEDFRR 21 1 O94842-3;O94842-2;O94842;C9J919;C9JNL1 O94842-3 TOX4 TOX high mobility group box family member 4 1 0 LS(0.001)T(0.001)T(0.009)PS(0.672)PT(0.287)S(0.024)S(0.006)LHEDGVEDFRR 56.424 0.035407 3449000 939.07 617.53 785.08 527.94 1191.5 927.11 769.96 862.19 887.03 1038.9 TRUE FALSE FALSE 828.9936381 636.5553673 827.5237995 549.4716752 1103.605419 909.4269214 799.6576151 960.3382245 850.466248 1032.720577 0.802727918 0.616386835 0.801304649 0.53206229 1.068638937 0.880612764 0.774321373 0.929911 0.823520192 1 10.01223424 -8.960002398 0.967384615 0.990648782 0.799560723 0.033834524 0.151321869 0.609250123 1.099576506 0.071314343 0.02710304 1.10E-09 8.960002398 -0.191088059 S(ph)AS(ph)PYPSHSLS(ph)SPQR ddPTM_HeLa_CUDC101_4h_R1 2 SASPYPSHSLSSPQR 15 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 0 S(1)AS(1)PYPS(0.002)HS(0.002)LS(0.851)S(0.145)PQR;S(0.926)AS(0.966)PY(0.089)PS(0.067)HS(0.052)LS(0.504)S(0.396)PQR ; 98.408 0.0096894 53413000 4077.7 3341.3 3112 2906.5 4115.6 3789.6 3883 3329.7 3932 4263.1 TRUE FALSE FALSE 3599.718187 3444.241493 3280.244133 3025.039633 3812.000387 3717.319694 4032.768611 3708.739589 3769.921296 4237.742892 0.849442328 0.812753766 0.774054542 0.713832743 0.899535551 0.877193305 0.951631261 0.875168618 0.889605951 1 12.04908035 -8.958228539 0.855519921 0.996747277 0.844067944 0.188215651 0.070869631 0.451241972 0.621828449 0.040919154 0.01401781 1.10E-09 8.958228539 -0.152679333 IFSLSGT(ph)LETVR ddPTM_HeLa_CUDC101_4h_R1 1 IFSLSGTLETVR 12 0 B4DEM9;Q9Y2S7 B4DEM9 POLDIP2 Polymerase delta-interacting protein 2 1 0 IFS(0.001)LS(0.1)GT(0.899)LETVR 153.81 0.0016517 17758000 890.78 600.98 615.74 685.27 954.17 795.54 793.03 784.42 589.73 1228.5 TRUE FALSE FALSE 786.3641187 619.4954815 649.0287669 713.2182726 883.7827801 780.3664 823.6174327 873.7152021 565.4210798 1221.192827 0.643931164 0.507287193 0.531471159 0.584034115 0.723704529 0.639019803 0.674436841 0.715460476 0.463007207 1 10.25407531 -8.957691491 0.80901922 0.997469978 0.62550179 0 0.177200399 0.226149852 0.274985567 0.04916812 0.016032934 1.10E-09 8.957691491 -0.371968188 SCFES(ph)SPDPELK ddPTM_HeLa_CUDC101_4h_R1 1 SCFESSPDPELK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SCFES(0.5)S(0.5)PDPELK 231.74 9.45E-43 384880000 10737 9778 10331 9311.8 9997.3 10227 9046.1 9010.7 10208 5399.3 TRUE FALSE FALSE 9478.425136 10079.24859 10889.52511 9691.575453 9259.819096 10031.93701 9395.011107 10036.44167 9787.221919 5367.184723 1.765995699 1.877939573 2.028908202 1.805709315 1.725265586 1.869124603 1.750454212 1.869963898 1.823529918 1 12.38994983 -8.957589256 0.652790009 0.956565217 1.84974652 0 0.263869389 0.164962006 0.122818264 0.079855113 0.021556215 1.10E-09 8.957589256 0.893181303 S(ph)LEEDLETLK ddPTM_HeLa_CUDC101_4h_R1 3 SLEEDLETLK 10 0 P48681 P48681 NES Nestin 1 0 S(1)LEEDLETLK;S(1)LEEDLETLK;S(1)LEEDLETLK ;; 215.08 2.13E-24 40113400 6814.1 5617.5 5011.4 5037.3 5434.1 6089 6261.6 7157.6 6641.5 8026.3 TRUE FALSE FALSE 6015.361528 5790.568517 5282.331443 5242.742867 5033.237269 5972.86247 6503.112009 7972.392252 6367.734559 7978.559211 0.753940827 0.72576619 0.662065832 0.657103962 0.630845387 0.748614169 0.815073479 0.999227059 0.798105822 1 12.96191253 -8.957260214 0.7825134 1.000072388 0.740597636 0.127012445 0.115900994 0.459843633 0.518655607 0.069026374 0.021854394 1.10E-09 8.957260214 -0.259474752 EPFPTIYVDSQKENER ddPTM_HeLa_CUDC101_4h_R1 2 EPFPTIYVDSQKENER 16 1 O43776;K7EJ19;K7EIU7;K7EPK2;K7EQ35;O43776-2 O43776 NARS "Asparagine--tRNA ligase, cytoplasmic" 0 0 ; ; 86.777 0.013615 13192500 2193.34 2051.09 1703.18 1859.03 2031.46 2262.5 2074.53 2866.3 2274.8 2346.48 FALSE FALSE TRUE 1936.24001 2114.281652 1795.259063 1934.849279 1881.603243 2219.346582 2154.545317 3192.588006 2181.031781 2332.523033 0.830105419 0.906435487 0.769664024 0.829509185 0.806681528 0.951478957 0.923697338 1.368727323 0.935052624 1 11.18767561 -4.25029735 3.891779969 0.894590109 1.419620555 0.815161819 0.069245172 0.106886952 3.160228062 0.012058333 0.160896037 5.62E-05 4.25029735 0.525030445 NWTEDMEGGIS(ph)SPVK ddPTM_HeLa_CUDC101_4h_R1 3 NWTEDMEGGISSPVK 15 0 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 0 NWTEDMEGGIS(0.903)S(0.097)PVK;NWTEDMEGGIS(0.896)S(0.104)PVK;NWTEDMEGGIS(0.5)S(0.5)PVK ;; 200 1.91E-16 130685000 15569.6 13109.8 13157 12586.3 13755.4 13540 12169 12645 15108 15795.2 TRUE FALSE FALSE 13744.55509 13513.6974 13868.30722 13099.62372 12740.69155 13281.74706 12638.36241 14084.45569 14485.24185 15701.24945 0.875379704 0.860676562 0.883261378 0.834304541 0.811444439 0.845903831 0.804927178 0.8970277 0.92255345 1 13.93859175 -8.957027173 0.395942186 1.036264907 0.834441702 0.588781061 0.035168051 0.525592184 0.129315424 0.04473462 0.009503105 1.10E-09 8.957027173 -0.201823205 SPDLPNAAS(ph)APPAAAPEAPR ddPTM_HeLa_CUDC101_4h_R1 2 SPDLPNAASAPPAAAPEAPR 20 0 S4R3C3;S4R3I3;Q5JR12 S4R3C3 PPM1J Protein phosphatase 1J 1 0 SPDLPNAAS(1)APPAAAPEAPR;SPDLPNAAS(1)APPAAAPEAPR ; 109.54 0.00015897 7283600 1850.16 1473.48 1429.38 1548.93 1701.17 2003.59 1440.69 1534.8 1869.69 1861.55 TRUE FALSE FALSE 1633.287049 1518.876172 1506.656606 1612.10206 1575.678078 1965.374859 1496.257896 1709.515428 1792.620587 1850.477418 0.88263009 0.820802328 0.814198861 0.871181699 0.851498139 1.062090702 0.808579387 0.923823988 0.968734106 1 10.85368181 -8.956922488 0.897988993 0.996207085 0.879101998 0.256648981 0.070593683 0.540319225 0.829283866 0.038036714 0.013615314 1.10E-09 8.956922488 -0.117105087 WDQTADQTPGAT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 WDQTADQTPGATPK 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 WDQTADQT(0.452)PGAT(0.547)PK 133.23 0.0035471 58946000 3697.5 2829.6 2951.4 3194 3707.4 3820.1 3078.4 2726.5 2888.2 3442.6 TRUE FALSE FALSE 3264.084655 2916.776622 3110.961611 3324.265126 3433.912488 3747.237957 3197.134919 3036.873739 2769.147174 3422.123262 0.953818552 0.852329504 0.909073512 0.971404263 1.003445003 1.095003794 0.934254752 0.887423832 0.809189781 1 11.74067601 -8.953997288 1.151477069 0.996324488 0.954046094 0 0.086405499 1.068687424 2.793629867 0.028613708 0.012486864 1.11E-09 8.953997288 -0.042278395 GELS(ph)PSFLNPPLPPSIDDR ddPTM_HeLa_CUDC101_4h_R1 2 GELSPSFLNPPLPPSIDDR 19 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GELS(0.5)PS(0.5)FLNPPLPPSIDDR;GELS(0.5)PS(0.5)FLNPPLPPS(0.001)IDDR ; 185.09 2.24E-11 8654700 1973.31 1511.32 1735.88 1568.26 1738.22 1808.42 1903.37 1438.32 2160.27 2090.66 TRUE FALSE FALSE 1742.001593 1557.881978 1829.726924 1632.220421 1609.994974 1773.927402 1976.783618 1602.052535 2071.222756 2078.224661 0.838216207 0.749621543 0.880427876 0.78539171 0.774697271 0.853578265 0.951188606 0.770875529 0.996630824 1 11.02113591 -8.951281268 0.771935603 1.000760349 0.827143695 0.584811803 0.057807263 0.382634883 0.419311978 0.038192767 0.012025517 1.12E-09 8.951281268 -0.173616654 DSLGDFIEHYAQLGPSS(ph)PEQLAAGAEEGGGPR ddPTM_HeLa_CUDC101_4h_R1 2 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPR 32 0 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 DSLGDFIEHYAQLGPS(0.264)S(0.736)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.372)S(0.628)PEQLAAGAEEGGGPR ; 148.97 1.81E-17 68213000 4193.8 3527.6 3201.7 3360.1 4247.4 3618.5 3835.8 3214.7 3603.9 4361.8 TRUE FALSE FALSE 3702.209121 3636.281175 3374.793587 3497.139402 3934.077764 3549.483141 3983.748091 3580.648454 3455.345717 4335.85582 0.853858909 0.838653619 0.778345436 0.80656266 0.907335928 0.818634957 0.918791643 0.825822768 0.796923574 1 12.08210107 -8.950953965 0.742424301 1.002083748 0.843222991 0 0.074048341 0.322215182 0.323184567 0.029052777 0.008836981 1.12E-09 8.950953965 -0.158860757 DSLSS(ph)PGNFVLTCQWK ddPTM_HeLa_CUDC101_4h_R1 2 DSLSSPGNFVLTCQWK 16 0 O75815;O75815-3 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 0 DS(0.002)LS(0.121)S(0.877)PGNFVLTCQWK;DS(0.005)LS(0.099)S(0.897)PGNFVLTCQWK ; 165.78 2.00E-05 18461200 6962.3 6628.3 5735.1 6148.2 7940.1 6392.6 6281.2 4987.4 8124 3643.4 TRUE FALSE FALSE 6146.189748 6832.510067 6045.156854 6398.950171 7354.374642 6270.671806 6523.467988 5555.145456 7789.125281 3621.728895 1.697031977 1.886532721 1.669135661 1.766821967 2.030625388 1.731402871 1.801202734 1.533838014 2.150664919 1 11.82246284 -8.949946255 0.61565215 0.946799914 1.790125789 0 0.376797657 0.257918429 0.168413899 0.114833917 0.029831774 1.12E-09 8.949946255 0.843325875 EPK(ac)QK(ac)DGAK ddPTM_HeLa_CUDC101_4h_R1 1 EPKQKDGAK 9 2 Q8TD26-2;Q8TD26-3;Q8TD26 Q8TD26-2 CHD6 Chromodomain-helicase-DNA-binding protein 6 0 2 EPK(1)QK(1)DGAK 83.998 0.018502 0 837.72 1687.9 535.23 1189.5 1000.4 1710.9 1714.8 1059 193.68 225.62 FALSE TRUE FALSE 739.5237315 1739.902198 564.1661528 1238.012951 926.6024851 1678.267433 1780.94041 1179.552279 185.6964284 224.2780022 3.297352947 7.757792477 2.515476985 5.519992774 4.131490721 7.482978342 7.940771689 5.259331133 0.827974329 1 7.809144314 -7.516242847 0.263812742 1.32E-18 7.554055747 0.591645691 1.618739686 0.869026631 0.222756001 2.518073771 2.263091849 3.05E-08 7.516242847 7.554055747 (ac)MEDSMDMDMS(ph)PLRPQNYLFGCELK ddPTM_HeLa_CUDC101_4h_R1 3 MEDSMDMDMSPLRPQNYLFGCELK 24 1 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 1 0 MEDS(0.467)MDMDMS(0.489)PLRPQNY(0.044)LFGCELK;MEDS(0.169)MDMDMS(0.712)PLRPQNY(0.119)LFGCELK;MEDS(0.483)MDMDMS(0.503)PLRPQNY(0.014)LFGCELK ;; 71.174 3.10E-05 66150600 8668.22 7898.64 7247.93 7152.34 8770.09 8690.95 7195.78 7140.7 8225.03 6524.41 TRUE FALSE FALSE 7652.144392 8141.987736 7639.77502 7444.04334 8123.137933 8525.184609 7473.323645 7953.568424 7885.990782 6485.602519 1.179866384 1.255394192 1.177959179 1.147779766 1.252487785 1.314478429 1.152294428 1.226342256 1.215922616 1 12.66302489 -8.949731056 0.478217218 0.965445625 1.2253786 0 0.082595515 0.542868025 0.200415821 0.065953666 0.014697449 1.12E-09 8.949731056 0.259932975 QTDPSTPQQES(ph)SKPLGGIQPSSQTIQPK ddPTM_HeLa_CUDC101_4h_R1 2 QTDPSTPQQESSKPLGGIQPSSQTIQPK 28 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 QTDPS(0.003)T(0.007)PQQES(0.481)S(0.481)KPLGGIQPS(0.011)S(0.011)QT(0.006)IQPK;QT(0.004)DPS(0.032)T(0.032)PQQES(0.315)S(0.315)KPLGGIQPS(0.189)S(0.051)QT(0.062)IQPK ; 56.452 0.0020395 38170000 4278.3 3490.5 3633.1 3501.9 3721.6 3925.5 3802.3 3552.9 4218.4 4223.8 TRUE FALSE FALSE 3776.804159 3598.038168 3829.516376 3644.722619 3447.064982 3850.627628 3948.955985 3957.347775 4044.515767 4198.67665 0.89952251 0.856945764 0.912076994 0.868064612 0.820988438 0.917105066 0.940523959 0.942522634 0.963283459 1 12.03571897 -8.949706138 0.779275351 1.000114089 0.893099358 0.452479558 0.037398614 0.409697382 0.458944677 0.025268626 0.008038229 1.12E-09 8.949706138 -0.107014731 TPSSS(ph)PPIT(ph)PPASETK ddPTM_HeLa_CUDC101_4h_R1 1 TPSSSPPITPPASETK 16 0 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 2 0 T(0.001)PS(0.017)S(0.115)S(0.882)PPIT(0.984)PPAS(0.002)ETK 99.747 0.016512 25377000 3797.8 3674 2903.2 3109.8 2790 2919.6 2526.9 2885 4278 4373.4 TRUE FALSE FALSE 3352.627641 3787.191585 3060.155774 3236.631086 2584.187258 2863.913494 2624.363379 3213.416738 4101.659029 4347.386822 0.771182271 0.871142077 0.703906944 0.744500367 0.594423125 0.658766659 0.603664566 0.739160528 0.943476897 1 12.08593275 -8.94946825 0.208844428 1.182957392 0.590159637 0.771353025 0.062267935 1.941614808 0.156627243 0.338463867 0.098516554 1.12E-09 8.94946825 -0.592797755 DQHLNNS(ph)SSSPQR ddPTM_HeLa_CUDC101_4h_R1 1 DQHLNNSSSSPQR 13 0 A0A5H1ZRS1;A0A4W8VX11;E7EV93;E9PGW9 A0A5H1ZRS1 PCM1 1 0 DQHLNNS(0.693)S(0.102)S(0.102)S(0.102)PQR 119.65 0.0014496 47645000 3887.4 3103.9 2872.2 3494.5 4299.8 3429.8 3232.7 2458.3 4424.3 4158.8 TRUE FALSE FALSE 3431.724865 3199.52748 3027.47982 3637.020815 3982.61232 3364.382279 3357.386322 2738.142935 4241.928481 4134.063273 0.83010942 0.773942552 0.732325468 0.879769025 0.96336511 0.813819736 0.812127464 0.662336968 1.026091814 1 12.01334475 -8.948654413 0.675658751 1.0078067 0.811052244 0.522721607 0.077311047 0.589827999 0.477214741 0.063623758 0.017864754 1.13E-09 8.948654413 -0.196754456 KYES(ph)DEDSLGS(ph)SGR ddPTM_HeLa_CUDC101_4h_R1 1 KYESDEDSLGSSGR 14 1 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase 2 0 KYES(0.993)DEDS(0.055)LGS(0.866)S(0.086)GR 133.96 0.0013934 19245000 6692.7 5649.4 5696.3 5846.2 6905.7 6114.8 5851.2 5167.9 5589.5 5237.8 TRUE FALSE FALSE 5908.191851 5823.451318 6004.259208 6084.633305 6396.280269 5998.170378 6076.882744 5756.192847 5359.098444 5206.645333 1.134740601 1.118465143 1.153191513 1.168628343 1.228483959 1.152022078 1.167139752 1.10554733 1.029280487 1 12.34613842 -8.94854726 0.458275818 0.973190038 1.166594024 0.765093247 0.031113765 0.494088083 0.166326817 0.04366309 0.009595909 1.13E-09 8.94854726 0.193403987 EKCEY(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 EKCEYK 6 1 P38432 P38432 COIL Coilin 1 0 EKCEY(1)K 73.616 0.0027783 0 1256.6 967.94 1131.5 974.38 1046.8 1145.4 1040 961.59 1060.6 1414.4 TRUE FALSE FALSE 1109.303253 997.7610841 1192.672313 1014.119428 969.5796495 1123.553403 1080.113148 1071.053519 1016.881619 1405.987086 0.788985378 0.70965167 0.848281129 0.721286446 0.689607792 0.799120714 0.768224089 0.761780481 0.723251038 1 10.45736763 -8.948149062 0.561843829 1.023889264 0.75261348 0 0.095803927 0.327772656 0.173776505 0.045031277 0.01096898 1.13E-09 8.948149062 -0.271275785 KPDGVKES(ph)TESSNTTIEDEDVK ddPTM_HeLa_CUDC101_4h_R1 1 KPDGVKESTESSNTTIEDEDVK 22 2 H0Y9J2;D6R938;Q13557-8;Q13557-12;Q13557 H0Y9J2 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 1 0 KPDGVKES(0.444)T(0.444)ES(0.067)S(0.034)NT(0.005)T(0.005)IEDEDVK 45.862 0.029047 20791000 3611.2 2848.5 2610.4 3385.4 3014.7 3460.1 3028.1 3198.8 3274 3908.2 TRUE FALSE FALSE 3187.90061 2936.258909 2751.52612 3523.471245 2792.311587 3394.104357 3144.894831 3562.938462 3139.044334 3884.953853 0.820576185 0.755802777 0.708251944 0.906953179 0.718750259 0.873653713 0.809506355 0.917112171 0.808000417 1 11.92368175 -8.947675509 0.825561833 0.997470846 0.811217177 0 0.089473154 0.367258772 0.46877036 0.040075379 0.013454706 1.13E-09 8.947675509 -0.186253669 T(ph)GPPPISPSK ddPTM_HeLa_CUDC101_4h_R1 1 TGPPPISPSK 10 0 A0A075B6E4;A0A0A6YYI5;G5E9M7;Q14135-2;Q14135;Q14135-4;A0A096LP98;E7EUJ2;F8WBN7;F8W708;E7ERW0;E7EQU6;E7EWF5 A0A075B6E4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 T(0.998)GPPPIS(0.002)PSK 144.55 0.0041156 29771000 3024.2 2480 2483.5 2550.1 2403.2 2421 2470.9 2683.6 2694 3490 TRUE FALSE FALSE 2669.70786 2556.40586 2617.765522 2654.1041 2225.920724 2374.823459 2566.203441 2989.090177 2582.95218 3469.241325 0.76953651 0.736877496 0.754564263 0.765038766 0.641615995 0.68453683 0.739701624 0.861597651 0.744529405 1 11.76040448 -8.947336408 0.552632644 1.026947854 0.730336873 0 0.095051471 0.39646209 0.202529026 0.059083868 0.01425004 1.13E-09 8.947336408 -0.296610981 SEAAS(ph)PALPVITK ddPTM_HeLa_CUDC101_4h_R1 2 SEAASPALPVITK 13 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 SEAAS(1)PALPVITK;SEAAS(1)PALPVITK ; 210.07 9.71E-24 387470000 15035.2 13472.6 12782.4 11489.2 13777 11221.4 13479.5 12185.7 15030.3 15328.9 TRUE FALSE FALSE 13272.79665 13887.67484 13473.45521 11957.77924 12760.69816 11007.37049 13999.40883 13572.87083 14410.74467 15237.72302 0.871048557 0.911400924 0.884217097 0.784748431 0.837441273 0.722376334 0.918733646 0.890741406 0.94572822 1 13.89535972 -8.946361992 0.393275933 1.034787182 0.834106357 0.422188631 0.057407598 1.218898284 0.297618361 0.102749777 0.022086091 1.13E-09 8.946361992 -0.200680825 SSQQPST(ph)PQQAPPGQPQQGTFVAHK ddPTM_HeLa_CUDC101_4h_R1 4 SSQQPSTPQQAPPGQPQQGTFVAHK 25 0 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 S(0.003)S(0.003)QQPS(0.266)T(0.727)PQQAPPGQPQQGTFVAHK;S(0.036)S(0.036)QQPS(0.208)T(0.721)PQQAPPGQPQQGTFVAHK;S(0.004)S(0.004)QQPS(0.475)T(0.518)PQQAPPGQPQQGTFVAHK;S(0.054)S(0.054)QQPS(0.261)T(0.63)PQQAPPGQPQQGTFVAHK ;;; 155.5 8.98E-11 67143100 11667.6 9708.7 9455.8 9680.6 10163.5 10429.7 10841.2 9699.8 10326.8 11442.4 TRUE FALSE FALSE 10299.94161 10007.81354 9967.00915 10075.41671 9413.758854 10230.77085 11259.34872 10803.98602 9901.124933 11374.3401 0.905541906 0.879858827 0.87627142 0.885802308 0.82763121 0.899460607 0.989890281 0.949856074 0.870479065 1 13.47349523 -8.945643914 0.81025481 0.999018739 0.900399847 0 0.056987606 0.492705744 0.603422832 0.028295441 0.009363253 1.13E-09 8.945643914 -0.098618893 MRS(ph)PQPARPGSAAVPGAAFAPIPR ddPTM_HeLa_CUDC101_4h_R1 1 MRSPQPARPGSAAVPGAAFAPIPR 24 2 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 MRS(0.992)PQPARPGS(0.008)AAVPGAAFAPIPR 67.388 0.0012967 83685000 149.42 130.44 0 177.32 178.56 164.29 59.78 161.62 177.95 233.23 TRUE FALSE FALSE 131.9052141 134.4587018 0 184.551876 165.3879845 161.156442 62.08573462 180.0181675 170.6148257 231.8427376 0.568942618 0.579956496 0 0.796021812 0.7133628 0.695111021 0.26779245 0.776466709 0.73590757 1 7.857002725 -8.945630519 0.779917815 0.999824818 0.541733182 0.18335193 0.245808764 0.564430125 0.634324885 0.148857389 0.047604249 1.13E-09 8.945630519 -0.458091636 S(ph)SGGREDLESSGLQR ddPTM_HeLa_CUDC101_4h_R1 3 SSGGREDLESSGLQR 15 1 Q9UK76-3;Q9UK76;J3KSH8;J3KT51;Q9UK76-2 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 S(0.953)S(0.047)GGREDLESSGLQR;S(0.498)S(0.498)GGREDLES(0.003)S(0.001)GLQR;S(0.935)S(0.065)GGREDLESSGLQR ;; 114.31 0.0082533 269369000 4398.97 3709.09 3889.54 3446.54 3897.32 3785.88 3856.2 3391.22 4297.54 4296.03 TRUE FALSE FALSE 3883.329405 3823.362667 4099.820298 3587.104798 3609.822468 3713.670647 4004.934926 3777.262777 4120.393582 4270.477022 0.909343238 0.895301074 0.960038018 0.839977543 0.845297246 0.869614946 0.937819102 0.884506053 0.964855579 1 12.06018152 -8.944235531 0.413799804 1.023115429 0.88265412 0.50829798 0.035733926 0.974918555 0.264746196 0.059173877 0.012786682 1.14E-09 8.944235531 -0.140461309 RPDDVPLSLS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 RPDDVPLSLSPSK 13 1 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 0 RPDDVPLS(0.003)LS(0.97)PS(0.027)K;RPDDVPLS(0.317)LS(0.614)PS(0.069)K ; 108.96 0.0026262 35894000 7008.6 5848.2 5497.8 5466.9 5938.4 6281.7 5495.3 5159 6383 8258.4 TRUE FALSE FALSE 6187.062532 6028.37611 5795.027698 5689.863812 5500.336063 6161.887039 5707.255562 5746.279707 6119.890038 8209.27867 0.753667013 0.734336883 0.705911924 0.693101555 0.670014539 0.750600301 0.695220103 0.699973766 0.745484504 1 13.00303975 -8.943985625 0.481058123 1.044657532 0.695720368 0.178683878 0.080853195 0.169658837 0.063659063 0.02774184 0.006238211 1.14E-09 8.943985625 -0.348937164 SPLLAGGS(ph)PPQPVVPAHK ddPTM_HeLa_CUDC101_4h_R1 2 SPLLAGGSPPQPVVPAHK 18 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4;C9JIY9 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 SPLLAGGS(1)PPQPVVPAHK;SPLLAGGS(1)PPQPVVPAHK ; 137.45 7.80E-05 75540000 4479.6 4021.5 3421.3 3742.1 3903.6 3827.3 3783.3 3354.8 4302.9 4603.1 TRUE FALSE FALSE 3954.508079 4145.397648 3606.265827 3894.719013 3615.639205 3754.300629 3929.223148 3736.696871 4125.532641 4575.720556 0.864237234 0.90595516 0.788130696 0.851170644 0.790179199 0.820482934 0.858711344 0.816635724 0.901613765 1 12.15978323 -8.943170738 0.379158147 1.041661534 0.817899758 0.515371864 0.042358183 0.60075485 0.136464236 0.055315055 0.011945851 1.14E-09 8.943170738 -0.223761776 RAETFAGYDCTNS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 4 RAETFAGYDCTNSPTK 16 1 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 0 RAETFAGYDCTNS(0.983)PT(0.017)K;RAETFAGYDCTNS(0.999)PT(0.001)K;RAETFAGYDCT(0.001)NS(0.993)PT(0.006)K;RAETFAGYDCTNS(0.998)PT(0.002)K ;;; 220.34 4.03E-32 126016000 8807.4 8092 7955.9 8189.79 8642.7 7764.2 7066.54 7609.31 7748.85 4871.21 TRUE FALSE FALSE 7775.009923 8341.304929 8386.020019 8523.805035 8005.14524 7616.110821 7339.098815 8475.523093 7429.439123 4842.235826 1.605665276 1.722614352 1.731848741 1.760303575 1.65319194 1.572850042 1.515642583 1.750332573 1.534299317 1 12.24145763 -8.941865159 0.67238896 0.973592079 1.670764184 0.297950148 0.178411929 0.18626406 0.149467145 0.070940362 0.019992536 1.14E-09 8.941865159 0.697172106 VDSSTNSSPS(ph)PQQSESLS(ph)PAHTSDFR ddPTM_HeLa_CUDC101_4h_R1 1 VDSSTNSSPSPQQSESLSPAHTSDFR 26 0 F2Z3H6;Q9BQE9-2;Q9BQE9-3;Q9BQE9 F2Z3H6 BCL7B B-cell CLL/lymphoma 7 protein family member B 2 0 VDS(0.035)S(0.041)T(0.047)NS(0.096)S(0.112)PS(0.668)PQQS(0.006)ES(0.473)LS(0.513)PAHT(0.007)S(0.002)DFR 102.4 5.93E-06 8118000 974.7 648.82 800.34 736.15 1131.3 782.06 907.4 723.61 1117.2 1192.3 TRUE FALSE FALSE 860.4471435 668.8093752 843.6088013 766.1733789 1047.846253 767.1435085 942.398722 805.9828375 1071.148543 1185.208147 0.725988212 0.564296978 0.711781136 0.646446264 0.884103148 0.647264795 0.795133517 0.680034844 0.903764074 1 10.21092473 -8.939676547 0.814591024 0.996868108 0.708807868 0.547260041 0.087345893 0.299572932 0.371983328 0.050224903 0.016809045 1.15E-09 8.939676547 -0.288060241 ERECSPSS(ph)PLPPLPEDEEGSEVTNSK ddPTM_HeLa_CUDC101_4h_R1 2 ERECSPSSPLPPLPEDEEGSEVTNSK 26 1 Q96GY3 Q96GY3 LIN37 Protein lin-37 homolog 1 0 ERECS(0.015)PS(0.244)S(0.741)PLPPLPEDEEGSEVTNSK;ERECS(0.014)PS(0.098)S(0.887)PLPPLPEDEEGSEVTNSK ; 158.75 1.70E-11 113102000 3757.2 3536.6 3326.8 3760 4173.6 3515.5 3546.7 3577.9 3298.9 1403.51 TRUE FALSE FALSE 3316.786712 3645.558454 3506.656871 3913.349052 3865.721843 3448.447695 3683.497407 3985.193674 3162.917946 1395.16186 2.377349042 2.613000368 2.513440893 2.804942684 2.770805276 2.471718726 2.640193595 2.85643823 2.267061648 1 10.44621679 -8.939256854 0.468263269 0.729783489 2.730158876 0.368739094 0.405060851 0.174979957 0.062055304 0.161665407 0.036173351 1.15E-09 8.939256854 2.000375387 NSS(ph)EASSGDFLDLK ddPTM_HeLa_CUDC101_4h_R1 2 NSSEASSGDFLDLK 14 0 Q9UK76-3;Q9UK76;J3KSH8;J3KT51;Q9UK76-2 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 NS(0.215)S(0.785)EASSGDFLDLK;NS(0.3)S(0.7)EASSGDFLDLK ; 295.22 1.06E-122 171918000 5854.3 4311 4745.8 4220.4 5222.6 5504 5478.1 5438.8 5240.7 6567.4 TRUE FALSE FALSE 5168.067829 4443.8168 5002.372303 4392.526154 4837.339203 5399.02037 5689.392152 6057.931008 5024.676128 6528.336813 0.791636213 0.68069662 0.766255242 0.672840002 0.74097574 0.827013147 0.871491823 0.927944005 0.769671705 1 12.67249978 -8.938880956 0.862723904 0.99450985 0.781760347 0 0.101711646 0.372151003 0.525192341 0.046789378 0.016488577 1.15E-09 8.938880956 -0.212749503 DTYSDRS(ph)GS(ph)SSPDSEITELK ddPTM_HeLa_CUDC101_4h_R1 1 DTYSDRSGSSSPDSEITELK 20 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 DT(0.028)Y(0.06)S(0.122)DRS(0.755)GS(0.68)S(0.313)S(0.042)PDSEITELK 73.688 0.0077773 9421500 3392.1 2832.6 2507.9 2482.7 2891 3240.5 2847.5 2567.3 2929.4 4366.9 TRUE FALSE FALSE 2994.48318 2919.869049 2643.48466 2583.955237 2677.73669 3178.692862 2957.329029 2859.551055 2808.648892 4340.925485 0.689825981 0.67263745 0.608967988 0.595254456 0.616858478 0.732261559 0.681266942 0.658742258 0.647016149 1 12.08378694 -8.938250976 0.615530079 1.022489663 0.648299844 0 0.114354264 0.20355251 0.133595306 0.040114332 0.010561845 1.15E-09 8.938250976 -0.374189819 TSS(ph)TCS(ph)NESLSVGGTSVTPR ddPTM_HeLa_CUDC101_4h_R1 2 TSSTCSNESLSVGGTSVTPR 20 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 2 0 T(0.076)S(0.093)S(0.67)T(0.181)CS(0.966)NES(0.013)LS(0.003)VGGTSVTPR;T(0.037)S(0.045)S(0.839)T(0.164)CS(0.914)NES(0.001)LSVGGTSVTPR ; 101.54 0.0060442 24946000 4256.1 4205.9 3535.3 3119.5 4328.7 3937.6 3717.3 3254.4 4216.6 3076 TRUE FALSE FALSE 3757.20641 4335.478794 3726.429012 3246.726694 4009.380425 3862.49684 3860.677506 3624.867741 4042.789963 3057.703815 1.228767283 1.4178871 1.218701757 1.06181857 1.311238978 1.26320176 1.26260676 1.185486875 1.322165327 1 11.57823295 -8.935971631 0.815993464 1.002663433 1.244415643 0 0.130174422 0.382027091 0.476726582 0.053708962 0.018075655 1.16E-09 8.935971631 0.24175221 STTTPPRCS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 1 STTTPPRCSPAR 12 1 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 STTTPPRCS(1)PAR 64.224 0.039299 804860 915.31 823.99 699.75 955.77 808.87 821.14 866.69 577.36 775.44 705.15 TRUE FALSE FALSE 808.0187493 849.3761552 737.5806016 994.7504318 749.2012716 805.4781226 900.1185236 643.0843286 743.476035 700.9557364 1.152738621 1.211740073 1.052249897 1.419134448 1.068828219 1.149114103 1.284130334 0.917439284 1.060660462 1 9.453179534 -8.935797541 0.729063987 0.997436258 1.165826297 0.123918654 0.129549602 0.876428751 0.848237394 0.082878597 0.025234158 1.16E-09 8.935797541 0.168390039 EQAEAEVASLNR ddPTM_HeLa_CUDC101_4h_R1 1 EQAEAEVASLNR 12 0 P06753-2;A0A087WWU8;P06753-5;P06753-3;P06753-6;P06753-4;D6R904;A0A494C0G0 P06753-2 TPM3 Tropomyosin alpha-3 chain 0 0 134.75 0.0078296 4579000 1851 1395.9 1167.5 1565.6 1775 1267.9 1467.1 1435.9 1804.2 1624.8 FALSE FALSE TRUE 1634.028586 1438.906024 1230.618581 1629.451935 1644.061786 1243.71692 1523.686538 1599.357052 1729.830112 1615.135617 1.01169745 0.890888672 0.761928948 1.008863849 1.017909437 0.770038693 0.943379938 0.990230811 1.0710123 1 10.65743959 -7.266257572 23.87240844 1.005523799 0.909686226 0.261322208 0.086726886 242.7346705 1202661.198 0.014079587 0.016384717 5.42E-08 7.266257572 -0.095837573 KNS(ph)ITEISDNEDDLLEYHR ddPTM_HeLa_CUDC101_4h_R1 1 KNSITEISDNEDDLLEYHR 19 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 KNS(0.5)IT(0.5)EISDNEDDLLEYHR 161.19 2.20E-05 5238300 2576.2 2161.5 2109 2127.7 1748.6 2186.5 2172.1 1979.4 2317.1 3057.8 TRUE FALSE FALSE 2274.221741 2228.093253 2223.018919 2214.476803 1619.609262 2144.796155 2255.878625 2204.726895 2221.588157 3039.61207 0.748194733 0.733018952 0.73134955 0.728539285 0.532834199 0.705615094 0.742160043 0.725331669 0.730878845 1 11.5696715 -8.933525013 0.456766664 1.050886464 0.683587288 0.103576677 0.100323042 0.496186647 0.167259348 0.083043626 0.01854799 1.17E-09 8.933525013 -0.367299176 AADKS(ph)PESQNLIDGTK ddPTM_HeLa_CUDC101_4h_R1 3 AADKSPESQNLIDGTK 16 1 Q9HCE3 Q9HCE3 ZNF532 Zinc finger protein 532 1 0 AADKS(0.81)PES(0.19)QNLIDGTK;AADKS(0.973)PES(0.026)QNLIDGT(0.001)K;AADKS(0.995)PES(0.004)QNLIDGT(0.001)K ;; 182.49 5.84E-10 70159000 9852.6 9053.5 8444.1 7859.2 8292 7579.8 7650.5 7687.5 9575.7 10305.6 TRUE FALSE FALSE 8697.693164 9332.427604 8900.613588 8179.732146 7680.31568 7435.227944 7945.582348 8562.613926 9180.985593 10244.30183 0.849027421 0.910987177 0.868835547 0.798466531 0.749715872 0.725791573 0.775609942 0.835841628 0.896204128 1 13.32253405 -8.929931474 0.203638623 1.11918544 0.731938763 0.564174013 0.051890997 2.421469377 0.190423596 0.273083347 0.082317126 1.18E-09 8.929931474 -0.387246678 EQDLMCIK ddPTM_HeLa_CUDC101_4h_R1 1 EQDLMCIK 8 0 A0A0C4DG80;Q9P2N7-2;Q9P2J3;Q9P2N7-3;Q9P2N7-4;Q9P2N7;Q9P2N7-5 A0A0C4DG80 KLHL13;KLHL9 Kelch-like protein 13;Kelch-like protein 9 0 0 114.78 0.032917 38003000 2101.9 1807.5 1063.3 1099.2 953.45 1156.3 1304.4 1474.7 1079.8 1659.9 FALSE FALSE TRUE 1855.518468 1863.186933 1120.785214 1144.030127 883.115893 1134.245504 1354.711145 1642.573887 1035.290187 1650.026841 1.124538354 1.129185833 0.679252717 0.693340313 0.535213047 0.687410335 0.821023702 0.995483132 0.627438391 1 10.68827378 -6.759730055 24.99994393 1.065731207 0.726007115 0.226365502 0.180747529 21.81280448 319022.5571 0.020081004 0.027564159 1.74E-07 6.759730055 -0.339724092 EDILENEDEQNS(ph)PPKK ddPTM_HeLa_CUDC101_4h_R1 2 EDILENEDEQNSPPKK 16 1 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 EDILENEDEQNS(1)PPKK;EDILENEDEQNS(1)PPKK ; 86.959 0.0057734 38031000 6375.3 4389.5 4690.4 5190.5 4712.7 5610.5 4421.4 3292.8 4655.7 8662.1 TRUE FALSE FALSE 5627.996998 4524.735292 4943.977212 5402.191025 4365.05351 5503.48906 4591.934879 3667.639042 4463.790075 8610.577444 0.653614352 0.525485697 0.574174873 0.627390098 0.506940857 0.63915447 0.533290004 0.42594577 0.51840775 1 13.07189428 -8.929503558 0.39842498 1.103895004 0.522262782 0 0.161359112 0.415333031 0.105176515 0.102187831 0.022385906 1.18E-09 8.929503558 -0.581632221 GEGDAPFSEPGTTSTQRPS(ph)S(ph)PETATK ddPTM_HeLa_CUDC101_4h_R1 1 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 GEGDAPFS(0.264)EPGT(0.196)T(0.196)S(0.181)T(0.181)QRPS(0.447)S(0.444)PET(0.083)AT(0.008)K 55.051 0.011086 53296000 3873.6 2840.4 2949.4 3193.3 3285.8 3461 3259.7 3219.5 3968.8 5113.5 TRUE FALSE FALSE 3419.54248 2927.909357 3108.853485 3323.536577 3043.41308 3394.987191 3385.427721 3585.994866 3805.204384 5083.084675 0.672729789 0.576010345 0.611607653 0.653842458 0.5987335 0.667899004 0.66601836 0.705476122 0.748601416 1 12.31148855 -8.928873866 0.697167321 1.009831191 0.638264886 0.457060968 0.083984481 0.15954719 0.139829519 0.032713177 0.009652541 1.18E-09 8.928873866 -0.371566305 HGGVCAPAAVATS(ph)PPGAIPK ddPTM_HeLa_CUDC101_4h_R1 1 HGGVCAPAAVATSPPGAIPK 20 0 A0A494BZT8;Q9Y6A5;E7EMT0 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 HGGVCAPAAVAT(0.024)S(0.976)PPGAIPK 141.31 1.51E-05 8719500 4540.3 4399.8 4656.4 4879.5 5175.2 3924.3 3762.7 2667.3 4610.9 633.7 TRUE FALSE FALSE 4008.092917 4535.352623 4908.139069 5078.507101 4793.435806 3849.450516 3907.828599 2970.93465 4420.83675 629.9307242 6.362751907 7.199764115 7.791553706 8.062008894 7.609465013 6.110910879 6.203584695 4.716287897 7.017972898 1 9.299049369 -8.928796917 0.707036578 0.86831686 6.882892089 0 2.052023826 0.233181538 0.211024029 0.777770498 0.232337524 1.18E-09 8.928796917 6.014575229 YSTAKNANFY(ph)LQAGS(ph)AFAEMK ddPTM_HeLa_CUDC101_4h_R1 1 YSTAKNANFYLQAGSAFAEMK 21 1 I3L1D5;O15296-2;O15296-3;O15296-4;O15296 I3L1D5 ALOX15B Arachidonate 15-lipoxygenase B 2 0 Y(0.193)S(0.054)T(0.002)AKNANFY(0.751)LQAGS(0.999)AFAEMK 57.147 0.0022405 0 1350.2 1081.6 1497.3 1181.6 1213.7 1318.8 1103.6 970.65 1221.2 796.09 TRUE FALSE FALSE 1191.931603 1114.922814 1578.248567 1229.790755 1124.167769 1293.646087 1146.166222 1081.144872 1170.861619 791.3548213 1.506191118 1.408878526 1.994362737 1.55403205 1.420560966 1.634723202 1.448359435 1.366194839 1.479565914 1 9.628180893 -8.928041472 0.697912986 0.986342506 1.554430754 0.096802208 0.222394582 0.408443878 0.358959827 0.128060199 0.037856938 1.18E-09 8.928041472 0.568088248 QADPQPQAWPPPDS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 2 QADPQPQAWPPPDSPVR 17 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ERU2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 QADPQPQAWPPPDS(1)PVR;QADPQPQAWPPPDS(1)PVR ; 199.75 1.31E-16 22524000 4877.7 4151.7 3717.3 4106 4172.8 4566.4 3835.4 3808 4736.4 5331.2 TRUE FALSE FALSE 4305.9434 4279.608956 3918.268482 4273.460428 3864.980857 4479.303528 3983.332663 4241.487328 4541.163587 5299.489785 0.81252037 0.807551128 0.739367117 0.806390917 0.72931188 0.845232977 0.751644559 0.800357676 0.85690581 1 12.37163775 -8.926001653 0.540268663 1.022970588 0.776916487 0.448332235 0.054742721 0.274853473 0.13489428 0.033512612 0.008168466 1.19E-09 8.926001653 -0.246054101 EQEAEPEEQEEDSSSDPR ddPTM_HeLa_CUDC101_4h_R1 2 EQEAEPEEQEEDSSSDPR 18 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 0 0 ; ; 173.44 1.16E-06 10352200 2976.2 2776.71 3057 3182.2 2652.3 2473.9 2380.17 2465.19 2742.74 2880.9 FALSE FALSE TRUE 2627.334348 2862.257144 3222.270667 3311.983871 2456.645113 2426.714479 2471.973954 2745.817265 2629.683096 2863.764279 0.917440855 0.999473722 1.125187115 1.156514136 0.857837753 0.847386252 0.863190442 0.958813994 0.918261016 1 11.48369703 DKMEGSDFES(ph)SGGR ddPTM_HeLa_CUDC101_4h_R1 1 DKMEGSDFESSGGR 14 1 A0A1B0GW41;Q8WYH8-2;Q8WYH8;E9PEN0 A0A1B0GW41 ING5 Inhibitor of growth protein 5 1 0 DKMEGS(0.132)DFES(0.802)S(0.066)GGR 108.06 0.020213 15571000 1687.5 1300 1014.8 1269.8 1511.2 1487.6 1352.6 1511 1552.1 2592.4 TRUE FALSE FALSE 1489.693808 1340.051459 1069.663158 1321.587933 1399.721787 1459.226509 1404.770235 1683.006132 1488.121781 2576.98029 0.5780773 0.520008424 0.41508395 0.512843632 0.543163559 0.566254431 0.545122615 0.653092357 0.577467273 1 11.33146579 -8.924515369 0.68495253 1.014318252 0.531985943 0.106926402 0.139718959 0.185545022 0.156465757 0.049013592 0.014314074 1.19E-09 8.924515369 -0.482332309 EQEPMPTVDSHEPR ddPTM_HeLa_CUDC101_4h_R1 1 EQEPMPTVDSHEPR 14 0 A6NGP5;Q9H910;Q9H910-3;H3BU16;Q9H910-2 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 0 0 100.54 0.00055665 0 1938 1779.5 2297 1795.3 2190.9 2214.3 1686.8 2256.7 2222.9 2096.8 FALSE FALSE TRUE 1710.830578 1834.324286 2421.182768 1868.520094 2029.281672 2172.065917 1751.860441 2513.593606 2131.271121 2084.32814 0.820806736 0.880055424 1.16161305 0.896461578 0.973590306 1.042094032 0.840491671 1.205949081 1.022521876 1 11.02536671 EQEVNILK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EQEVNILKK 9 1 P35579 P35579 MYH9 Myosin-9 0 1 ; EQEVNILK(1)K;EQEVNILK(1)K 137.95 0.0020745 5339000 5192.3 2497.2 1874.6 2082.37 7150.8 5864.1 7139.7 4140.7 4552.3 1599.67 FALSE TRUE FALSE 4583.666465 2574.135772 1975.946546 2167.298049 6623.29973 5752.252063 7415.080621 4612.060551 4364.652267 1590.155092 2.88252793 1.618795415 1.24261247 1.36294759 4.165191034 3.617415743 4.663117868 2.900384104 2.744796586 1 10.63495177 -1 0.125632403 0.733389382 11.57885312 0.297841858 1.020237703 65.76559678 0.562119007 3.98726863 126.1571529 0.1 1 10.84546374 LWAQDGSEDEPPKDS(ph)DGEDPETAAVGCR ddPTM_HeLa_CUDC101_4h_R1 2 LWAQDGSEDEPPKDSDGEDPETAAVGCR 28 1 A0A087WXB3;A0A087X223;A0A087WYW1;Q96NU1-4;Q96NU1-5;H7C3J6;H7BY14;A0A087WYU3;A0A087X1J5;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1 A0A087WXB3 SAMD11 Sterile alpha motif domain-containing protein 11 1 0 LWAQDGS(0.02)EDEPPKDS(0.932)DGEDPET(0.047)AAVGCR;LWAQDGS(0.001)EDEPPKDS(0.821)DGEDPET(0.178)AAVGCR ; 69.284 5.80E-05 166872000 4195.2 3779.4 3891.4 3874.3 3722.9 3739.5 3010.8 3462.4 4692 3304.6 TRUE FALSE FALSE 3703.445016 3895.838834 4101.780855 4032.3107 3448.269084 3668.175268 3126.927565 3856.54562 4498.593774 3284.944092 1.12739971 1.185968079 1.248660781 1.227512733 1.049719261 1.116662922 0.951896738 1.174006471 1.369458246 1 11.6816531 -8.923852697 0.932633294 1.005928659 1.132405694 0 0.140227138 0.587409252 0.98639913 0.044469837 0.01701553 1.19E-09 8.923852697 0.126477035 KLIS(ph)S(ph)DY(ph)YIWNS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 KLISSDYYIWNSK 13 1 H0YIY0;E7EQ45;Q9H0R1 H0YIY0 AP5M1 AP-5 complex subunit mu-1 4 0 KLIS(1)S(1)DY(0.504)Y(0.504)IWNS(0.993)K 74.46 0.0020498 0 1069.4 1175.3 785.01 973.39 1380.5 984.92 821.15 816.12 1020.6 372.98 TRUE FALSE FALSE 944.0465531 1211.5096 827.4500151 1013.089052 1278.663265 966.134292 852.8220306 909.0238019 978.530436 370.7614984 2.546236751 3.267625159 2.231758202 2.732454842 3.44874878 2.605810733 2.300190377 2.451775079 2.639245014 1 8.534347625 -8.923186836 0.683567834 0.944495465 2.726560385 0.02314515 0.62001933 0.302755796 0.254270146 0.295165958 0.086181652 1.19E-09 8.923186836 1.78206492 EQFLDGDGWTSR ddPTM_HeLa_CUDC101_4h_R1 4 EQFLDGDGWTSR 12 0 P27797;K7EJB9 P27797 CALR Calreticulin 0 0 ;;; ;;; 210.44 1.06E-22 709859000 7419.4 6816.9 6730.8 6243.9 8070 7406.8 7007.4 7609.6 7374.4 7138.3 FALSE FALSE TRUE 6549.709179 7026.920609 7094.687408 6498.55323 7474.692178 7265.527631 7277.677765 8475.846105 7070.424111 7095.841074 0.923034931 0.990287203 0.999837417 0.915825645 1.053390585 1.023913523 1.025625812 1.194480826 0.996418048 1 12.79275798 -1 0.646269883 0.966532335 19.87542543 0.718402514 0.038817774 79.21447146 0.480568248 0.00706991 2145.778679 0.1 1 18.90889309 EQFLQYAYDITFDPDTAHK ddPTM_HeLa_CUDC101_4h_R1 1 EQFLQYAYDITFDPDTAHK 19 0 H0Y626;O95361;K7ENN8;B3KP96;O95361-2 H0Y626 TRIM16 Tripartite motif-containing protein 16 0 0 108.18 9.25E-05 0 652.82 508.9 593.78 561.6 694.35 548.85 462.88 703.65 615.36 795.64 FALSE FALSE TRUE 576.2974292 524.5786058 625.8815429 584.5044754 643.1291838 538.3816007 480.7334367 783.7506717 589.9946003 790.9074979 0.72865339 0.663261642 0.791346073 0.739030136 0.813153479 0.68071374 0.60782511 0.990951121 0.745971687 1 9.627365161 -9.164177003 0.821955996 1.007232485 0.744260192 0 0.125420848 0.426877669 0.49985149 0.070788378 0.018310214 6.85E-10 9.164177003 -0.262972293 EQGDGAEDEEWDD ddPTM_HeLa_CUDC101_4h_R1 1 EQGDGAEDEEWDD 13 0 H0YMP5;Q7Z6K5 H0YMP5 ARPIN Arpin 0 0 109.16 0.026991 27625000 5133.4 4581.5 4323.1 4088.9 4549.1 4661.7 4389.9 4859.6 4549.4 4548.7 FALSE FALSE TRUE 4531.670634 4722.650585 4556.819863 4255.663016 4213.521956 4572.785839 4559.219914 5412.797221 4361.871806 4521.64413 1.002217446 1.044454284 1.007779412 0.941176018 0.931856164 1.011310423 1.008310204 1.197086074 0.964664994 1 12.14263174 -4.256346971 4.239077885 0.996305602 1.213642023 0.77822123 0.033049025 0.080228507 3.253967232 0.004573059 0.052859927 5.54E-05 4.256346971 0.217336421 EQGK(ac)TISNDDDVQK ddPTM_HeLa_CUDC101_4h_R1 2 EQGKTISNDDDVQK 14 1 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 0 1 ; EQGK(1)TISNDDDVQK;EQGK(1)TISNDDDVQK 287.04 1.59E-85 3690600 838.88 1027.82 1040.84 667.48 1089.12 790.52 532.42 404.62 676.56 954.77 FALSE TRUE FALSE 740.5477581 1059.485916 1097.110959 694.7027195 1008.777787 775.4421481 552.9556177 450.6803053 648.6719104 949.0909856 0.780270563 1.116316488 1.155959729 0.731966408 1.062888388 0.81703668 0.582616025 0.47485469 0.683466517 1 9.890402589 -4.772987182 2.669691646 0.928498637 0.493614827 0.525363123 0.152705958 0.153418072 2.14196049 0.020285253 0.091984718 1.69E-05 4.772987182 -0.43488381 RS(ph)FILT(ph)RS(ph)T(ph)FAGSGR ddPTM_HeLa_CUDC101_4h_R1 1 RSFILTRSTFAGSGR 15 2 P14410 P14410 SI "Sucrase-isomaltase, intestinal;Sucrase;Isomaltase" 4 0 RS(1)FILT(1)RS(1)T(0.973)FAGS(0.027)GR 57.225 0.032 5072800 239.82 140.07 155.33 156.84 241.96 316.54 214.64 157.74 229.41 345.75 TRUE FALSE FALSE 211.7086631 144.3853907 163.7276096 163.2366131 224.1110929 310.5025269 222.9187367 175.696484 219.9536227 343.6934636 0.615981057 0.420099321 0.47637685 0.474948262 0.652066788 0.903428665 0.648597545 0.511201121 0.63997034 1 8.424978605 -8.922376209 0.850647041 0.990150964 0.59281251 0.110595884 0.168287337 0.35686304 0.490292379 0.082980297 0.029397337 1.20E-09 8.922376209 -0.397338454 MTNNEDSLSPT(ph)SSTLSNLELDAAEKDR ddPTM_HeLa_CUDC101_4h_R1 2 MTNNEDSLSPTSSTLSNLELDAAEKDR 27 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 0 MTNNEDS(0.001)LS(0.047)PT(0.802)S(0.148)S(0.002)TLSNLELDAAEKDR;MT(0.001)NNEDS(0.037)LS(0.085)PT(0.363)S(0.363)S(0.114)T(0.037)LS(0.001)NLELDAAEKDR ; 139.75 3.78E-11 162792000 2426.63 2407.15 2087.58 1596.53 2171.35 2330.58 2142.2 1948.44 2630.81 2049.74 TRUE FALSE FALSE 2142.18411 2481.311438 2200.440889 1661.643394 2011.173836 2286.12807 2224.825372 2170.242534 2522.366898 2037.548055 1.051353908 1.217792843 1.079945518 0.815511266 0.987055903 1.121999584 1.091913079 1.065124588 1.237942286 1 10.99261837 -8.921984642 1.190664068 1.00460482 1.051992723 0 0.122211838 1.389027292 3.901301219 0.041360633 0.01899134 1.20E-09 8.921984642 0.047387902 QGSIT(ph)SPQANEQS(ph)VTPQR ddPTM_HeLa_CUDC101_4h_R1 1 QGSITSPQANEQSVTPQR 18 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QGS(0.022)IT(0.93)S(0.048)PQANEQS(0.99)VT(0.009)PQR 100.27 0.0079761 11198000 1540.8 1376.9 1119.6 908.27 1279.9 1417 1136.6 1035.3 1420.3 2140.6 TRUE FALSE FALSE 1360.18976 1419.320657 1180.128963 945.3131765 1185.484327 1389.973086 1180.439043 1153.154367 1361.754633 2127.867616 0.639226684 0.667015488 0.554606383 0.444253754 0.557123158 0.653223478 0.554752107 0.541929563 0.639962102 1 11.05519268 -8.921863973 0.4610423 1.070118816 0.546944376 0.23068073 0.123320293 0.339814677 0.117652356 0.081341464 0.018466825 1.20E-09 8.921863973 -0.52317444 EQISDIDDAVR ddPTM_HeLa_CUDC101_4h_R1 4 EQISDIDDAVR 11 0 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 0 ;;; ;;; 243.91 1.99E-54 318676000 18562.8 16150.4 15353.9 15439.8 16790 15570.6 16644.2 15947.4 17438.2 18650.8 FALSE FALSE TRUE 16386.89672 16647.97468 16183.97828 16069.50178 15551.43515 15273.61675 17286.17237 17762.78755 16719.39002 18539.86421 0.883873611 0.897955589 0.872928631 0.866754017 0.838810628 0.823825707 0.932378585 0.958086173 0.901807577 1 14.17834306 -9.095644849 0.655635639 1.009302658 0.87998022 0.111104193 0.04809186 0.537738188 0.378736004 0.038964066 0.008941247 8.02E-10 9.095644849 -0.129322438 EQIVVDLSHPGVSEDDQVSR ddPTM_HeLa_CUDC101_4h_R1 2 EQIVVDLSHPGVSEDDQVSR 20 0 O60701;O60701-3;O60701-2 O60701 UGDH UDP-glucose 6-dehydrogenase 0 0 ; ; 126.29 1.89E-05 17765000 3139.1 2469.32 2445.7 2341 3201.6 2727.18 2323.41 3026.5 3053.4 2695.3 FALSE FALSE TRUE 2771.139457 2545.396822 2577.92194 2436.476099 2965.424346 2675.163585 2413.024702 3371.024526 2927.53756 2679.268236 1.034289669 0.950034337 0.96217389 0.909381176 1.106803831 0.998467996 0.900628265 1.258188516 1.092663109 1 11.38762331 -4.247151919 24.83858233 1.000442397 1.25818871 0.589581379 0.065747708 1133.532946 1970599.488 0.00798572 0.225521964 5.66E-05 4.247151919 0.257746313 EQLAALK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EQLAALKK 8 1 Q9UII2 Q9UII2 ATPIF1 "ATPase inhibitor, mitochondrial" 0 1 ; EQLAALK(1)K;EQLAALK(1)K 135.79 0.0023683 10131900 11673.6 5304.5 4003.3 4951.3 9898.4 8033 8719.2 6396.3 6509.3 3945 FALSE TRUE FALSE 10305.2383 5467.925358 4219.730507 5153.235415 9168.214752 7879.783909 9055.502465 7124.428937 6240.983899 3921.534965 2.627858325 1.394332935 1.076040516 1.314086311 2.337914831 2.009362145 2.309172951 1.816744974 1.591464555 1 11.93720275 -9.650469823 1.495299436 1.001282771 1.957772229 0.108549659 0.504842097 0.413922065 1.667990394 0.389179805 0.088413322 2.24E-10 9.650469823 0.956489459 AGSCCLS(ph)PGGR ddPTM_HeLa_CUDC101_4h_R1 2 AGSCCLSPGGR 11 0 A0A087WU73;W0Z7M9;B0QY83;A0A499FIJ6;Q969V6;E7ER32;A0A087X287;A0A494BZX7 A0A087WU73 MKL1;mkl1 MKL/myocardin-like protein 1 1 0 AGSCCLS(1)PGGR;AGSCCLS(1)PGGR ; 140.45 0.001389 90682000 7520.8 6983.5 7721.6 7444 8647.2 7071.1 5996.6 5940.8 6485.6 1378.21 TRUE FALSE FALSE 6639.223225 7198.653358 8139.053053 7747.598496 8009.313284 6936.230549 6227.890871 6617.076658 6218.260823 1370.012346 4.846104669 5.254444152 5.940861101 5.655130423 5.846161394 5.062896383 4.54586478 4.829939438 4.538835612 1 10.41997318 -8.920339374 0.639291613 0.785427301 5.350780911 0.262077271 1.151082808 0.178572835 0.128871148 0.434450385 0.120341688 1.20E-09 8.920339374 4.56535361 TAS(ph)EINFDK ddPTM_HeLa_CUDC101_4h_R1 2 TASEINFDK 9 0 Q9Y4K4 Q9Y4K4 MAP4K5 Mitogen-activated protein kinase kinase kinase kinase 5 1 0 T(0.002)AS(0.998)EINFDK;T(0.196)AS(0.804)EINFDK ; 112.84 0.0088129 30113000 3483.4 2907.1 3027.9 3110.1 3232.9 3540.5 3164.7 2611.55 2626.1 2718.9 TRUE FALSE FALSE 3075.081132 2996.664305 3191.597433 3236.943321 2994.415408 3472.970861 3286.763539 2908.838296 2517.851046 2702.727862 1.137769428 1.108755472 1.180880057 1.19765788 1.107923387 1.284987257 1.216091189 1.076260151 0.931596215 1 11.40020054 -8.919247055 0.36171624 0.954612078 1.18954515 0.62830363 0.060481168 1.178812973 0.247283637 0.1110032 0.024731831 1.20E-09 8.919247055 0.234933072 EQLEEEEEAKHNLEK ddPTM_HeLa_CUDC101_4h_R1 2 EQLEEEEEAKHNLEK 15 1 P35579 P35579 MYH9 Myosin-9 0 0 ; ; 116.79 0.00071476 135807000 22333.1 19491.3 20499 18647.6 21322.5 20275.6 19053.5 20395 21156.2 19072.6 FALSE FALSE TRUE 19715.24787 20091.80385 21607.23795 19408.12973 19749.58166 19888.87671 19788.39988 22716.68436 20284.13248 18959.15533 1.039880075 1.059741508 1.139673027 1.02368114 1.04169101 1.049038123 1.043738475 1.198190741 1.069885875 1 14.21060707 -1 0.090420467 0.951122315 1.387234719 0.140045873 0.051762254 129.0000993 0.844853159 0.543979672 7.012356373 0.1 1 0.436112404 EQLMFPFHFVDR ddPTM_HeLa_CUDC101_4h_R1 1 EQLMFPFHFVDR 12 0 P82933 P82933 MRPS9 "28S ribosomal protein S9, mitochondrial" 0 0 85.42 0.0017889 0 3342.3 2269.3 2133.2 2000 2302.7 2566.1 2144.2 1914.7 1636 2282.8 FALSE FALSE TRUE 2950.520661 2339.214443 2248.527245 2081.568645 2132.834409 2517.155918 2226.902512 2132.661709 1568.563388 2269.221804 1.300234581 1.030844336 0.990880328 0.917305061 0.939896843 1.109259533 0.981350747 0.939820737 0.691234054 1 11.14798192 -7.01635066 22.92754302 1.143028082 0.983544807 0 0.165334878 236.7471625 331976.8807 0.019814018 0.02465491 9.63E-08 7.01635066 -0.159483275 EQLQLLEEQHR ddPTM_HeLa_CUDC101_4h_R1 3 EQLQLLEEQHR 11 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ;; ;; 160.86 0.00010561 23476100 15377.3 15181.4 12865.1 15427.7 16581 16272.6 15428.6 11722.7 15772 11912.8 FALSE FALSE TRUE 13574.7962 15649.12094 13560.62622 16056.90829 15357.85266 15962.22727 16023.68627 13057.16478 15121.87148 11841.94214 1.146331915 1.321499528 1.145135322 1.355935378 1.296903201 1.347939982 1.353129925 1.102620215 1.276975627 1 13.53161809 -7.830245996 0.63405818 1.014699315 1.294787897 0.028534045 0.117904332 0.293137306 0.268496406 0.031092075 0.023911937 1.48E-08 7.830245996 0.280088581 EQLRQEQALLEEIER ddPTM_HeLa_CUDC101_4h_R1 2 EQLRQEQALLEEIER 15 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 225.31 1.31E-32 28544000 1751.37 2141.91 1942.68 1629.21 2331.73 2102.02 1703.24 2355.79 2097.28 1792.85 FALSE FALSE TRUE 1546.077064 2207.899708 2047.707157 1695.656226 2159.722923 2061.927471 1768.934537 2623.963611 2010.829231 1782.186048 0.867517207 1.238871615 1.14898619 0.951447368 1.211839205 1.156965331 0.992564463 1.472328668 1.128293666 1 10.79943224 -1 0.26552985 0.941032084 3.608255699 0.18954451 0.148385053 36.11339892 0.456668249 0.068859397 44.45982514 0.1 1 2.667223615 ES(ph)SPFLSPLEASR ddPTM_HeLa_CUDC101_4h_R1 1 ESSPFLSPLEASR 13 0 Q9UP95-3;Q9UP95-5;Q9UP95-2;Q9UP95-6;Q9UP95;Q9UP95-4 Q9UP95-3 SLC12A4 Solute carrier family 12 member 4 1 0 ES(0.613)S(0.387)PFLSPLEASR 147.52 0.00045604 5928600 1963.1 1539.1 1474.8 1754.7 1650.6 1355.6 821.79 708.73 1394.7 1624.5 TRUE FALSE FALSE 1732.988394 1586.517847 1554.532149 1826.26425 1528.838526 1329.744189 853.4867156 789.4089584 1337.209876 1614.837402 1.073165875 0.982462906 0.962655526 1.130927639 0.946744561 0.82345392 0.528527959 0.488847334 0.828077102 1 10.65717319 -4.917376476 1.749565266 1.030638328 0.465843382 0.843312651 0.081003307 0.062123383 0.349460607 0.00748832 0.038116376 1.21E-05 4.917376476 -0.564794946 down KTVSLTPSPTTQVETPDLVDHDNTS(ph)PLFR ddPTM_HeLa_CUDC101_4h_R1 1 KTVSLTPSPTTQVETPDLVDHDNTSPLFR 29 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 KTVSLTPSPTT(0.001)QVET(0.004)PDLVDHDNT(0.253)S(0.742)PLFR 70.71 3.74E-05 10690000 661.06 438.53 503.25 572.1 700.46 524.21 591.5 630.07 742.28 717.46 TRUE FALSE FALSE 583.5715489 452.0405895 530.4572172 595.4327108 648.7884613 514.2115676 614.3143531 701.794622 711.6829042 713.192516 0.818252486 0.633826883 0.74377844 0.834883566 0.909696115 0.720999669 0.861358384 0.984018489 0.997883304 1 9.478147754 -8.919070588 0.961589352 0.990400969 0.810722076 0.378772035 0.093893462 0.442110993 0.793652541 0.047773163 0.018834338 1.20E-09 8.919070588 -0.179678893 (ac)S(ph)SPPEGK ddPTM_HeLa_CUDC101_4h_R1 4 SSPPEGK 7 0 P51397;B4DQ75 P51397 DAP Death-associated protein 1 1 0 S(0.963)S(0.037)PPEGK;S(0.892)S(0.108)PPEGK;S(0.994)S(0.006)PPEGK;S(0.842)S(0.158)PPEGK ;;; 81.635 0.020615 520759500 28841.4 15676.6 22671.5 26269.2 18726.1 16041.4 13599.3 4027.43 26177.3 30325.5 TRUE FALSE FALSE 25460.65481 16159.57746 23897.18987 27340.57152 17344.71291 15735.43702 14123.82956 4485.896352 25098.26061 30145.12258 0.844602796 0.536059438 0.792738189 0.906965014 0.575373773 0.521989485 0.468527853 0.148810022 0.832581143 1 14.87963698 -4.903943433 0.33086137 0.967770534 8.78E-27 0.700020927 0.133884503 1.785806186 0.190710274 0.055097054 0.654486676 1.25E-05 4.903943433 -0.967770534 down TLPSTSSSGSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 TLPSTSSSGSKR 12 1 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 0 1 ; TLPSTSSSGSK(1)R;TLPSTSSSGSK(1)R 224.75 1.62E-22 59588000 767.61 882.5 968.94 1837.71 1994.59 1820.09 1663.99 2714.1 306.43 514.34 FALSE TRUE FALSE 677.6319194 909.688779 1021.323827 1912.659757 1847.453069 1785.374816 1728.170652 3023.062173 293.7988257 511.2806828 1.325361865 1.779235574 1.997579532 3.740919267 3.613383278 3.491966107 3.380082037 5.912725192 0.574633143 1 8.997971709 -4.903351586 0.323096361 0.850464922 7.072906432 0.854599647 0.590282582 1.285428625 0.131402409 0.255370182 2.973481889 1.25E-05 4.903351586 6.222441511 up MS(ph)DPEGETLR ddPTM_HeLa_CUDC101_4h_R1 1 MSDPEGETLR 10 0 A0A087X2G9;A0A087WTJ8;Q96NG3-2;Q96NG3 A0A087X2G9 TTC25 Tetratricopeptide repeat protein 25 1 0 MS(0.999)DPEGET(0.001)LR 82.029 0.040508 54179000 3481.5 3118.6 3109.1 3081.8 3800 3230.9 2924.4 3130.6 3638.9 2072.2 TRUE FALSE FALSE 3073.403848 3214.68037 3277.187351 3207.489125 3519.681571 3169.275966 3037.195088 3486.97485 3488.903002 2059.874462 1.492034541 1.560619556 1.5909646 1.557128448 1.708687415 1.53857724 1.474456402 1.692809399 1.693745452 1 11.0083407 -8.918112692 0.505065261 0.924766219 1.603734446 0 0.224287737 0.240127553 0.101779062 0.078117228 0.018505431 1.21E-09 8.918112692 0.678968226 TDCSSGDASRPSSDNADS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 TDCSSGDASRPSSDNADSPK 20 1 E9PMR6;Q9NZN5-2;Q9NZN5 E9PMR6 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 0 TDCSSGDASRPSSDNADS(1)PK 93.416 0.00079505 32916000 2878.1 2623.4 2531.8 2571.3 2237.6 2689.1 2393.1 2477.9 2476.5 2264.1 TRUE FALSE FALSE 2540.733481 2704.223845 2668.676766 2676.168728 2072.536706 2637.809898 2485.402669 2759.97412 2374.417622 2250.633033 1.128897268 1.201539214 1.185744956 1.18907378 0.920868341 1.172030207 1.104312712 1.226310145 1.054999899 1 11.13611513 -8.917677115 0.84337508 1.003086916 1.137517852 0.219695253 0.083020005 0.592724405 0.800054337 0.046446616 0.016413536 1.21E-09 8.917677115 0.134430935 EQQEAIEHIDEVQNEIDR ddPTM_HeLa_CUDC101_4h_R1 2 EQQEAIEHIDEVQNEIDR 18 0 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 0 0 ; ; 191.97 5.35E-12 22666000 6142.8 4694.1 4709.7 4507.2 4292.1 4673.9 4412.8 3936.6 5119.1 5467.1 FALSE FALSE TRUE 5422.750296 4838.719657 4964.320628 4691.023098 3975.480334 4584.753145 4583.003174 4384.726632 4908.088531 5434.581446 0.997822988 0.890357373 0.913468807 0.8631802 0.731515458 0.843625805 0.843303798 0.806819564 0.903121718 1 12.40795321 -6.755533516 1.059405225 1.001254458 0.812613415 0.610251981 0.04851697 0.13267648 0.297119602 0.007069135 0.010931628 1.76E-07 6.755533516 -0.188641043 EQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_HeLa_CUDC101_4h_R1 2 EQQEAIEHIDEVQNEIDRLNEQASEEILK 29 1 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105-2 Q01105;Q01105-2 SET Protein SET 0 0 ; ; 120.08 1.01E-13 19096100 2912.19 2644.9 2439.41 2285.32 2449.17 2597.01 2546.6 2405.33 2584.37 2958.63 FALSE FALSE TRUE 2570.827503 2726.386234 2571.291883 2378.525228 2268.499609 2547.476361 2644.823215 2679.143045 2477.841175 2941.031937 0.874124307 0.927016874 0.874282204 0.80873832 0.771327771 0.866184528 0.899284085 0.910953401 0.842507401 1 11.52210674 -9.091234869 0.476388495 1.025737336 0.856407221 0 0.065019088 0.916522042 0.30956247 0.073269961 0.013807304 8.11E-10 9.091234869 -0.169330115 EQQSNIAVFQGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EQQSNIAVFQGKK 13 1 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 0 1 ; EQQSNIAVFQGK(1)K;EQQSNIAVFQGK(1)K 272.65 3.55E-66 6938400 3066.9 3526 3240.5 3271.5 3209.6 3264.9 3253.9 3278.2 3391.2 3835.2 FALSE TRUE FALSE 2707.402631 3634.631881 3415.691232 3404.925911 2972.834202 3202.627472 3379.404013 3651.377037 3251.413301 3812.38806 0.710159246 0.953374059 0.895945318 0.893121544 0.779782686 0.840058101 0.886427079 0.957766361 0.852854759 1 11.89647926 -9.706167218 1.607778679 0.999807129 0.840363352 0 0.086439491 0.372693456 1.741422577 0.061989623 0.01372056 1.97E-10 9.706167218 -0.159443777 KSSGEIVYCGQVFEKS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 1 KSSGEIVYCGQVFEKSPLR 19 2 M0R0P7;M0R3D6;M0R1A7;M0R117;Q02543 M0R0P7 RPL18A 60S ribosomal protein L18a 1 0 KS(0.006)S(0.006)GEIVY(0.017)CGQVFEKS(0.972)PLR 65.881 0.017064 21763000 1832.1 1717.3 1874.5 1757.5 1929.8 1540.1 1391.7 1555 2013.4 662.34 TRUE FALSE FALSE 1617.344015 1770.207977 1975.84114 1829.178447 1787.442499 1510.725158 1445.378335 1732.014914 1930.4068 658.4003722 2.456474941 2.688649722 3.000972088 2.778215997 2.714826076 2.294538737 2.195287846 2.630640849 2.931964928 1 9.362821341 -8.916355581 0.702247799 0.964162102 2.61131738 0 0.629241413 0.212753716 0.19051227 0.193217384 0.058188746 1.21E-09 8.916355581 1.647155278 TIS(ph)QEFLTPGK ddPTM_HeLa_CUDC101_4h_R1 1 TISQEFLTPGK 11 0 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5;Q0ZGT2-3 E7ETM8 NEXN Nexilin 1 0 T(0.004)IS(0.994)QEFLT(0.002)PGK 86.262 0.030146 55106000 2450.3 2362.4 1973.6 1927.2 1911.1 1974.2 2170.6 2297.3 2116.4 2497.3 TRUE FALSE FALSE 2163.079548 2435.182744 2080.298786 2005.799546 1770.12196 1936.545424 2254.320769 2558.815346 2029.161096 2482.445949 0.871350109 0.980961034 0.838003658 0.80799324 0.71305559 0.780095706 0.908104674 1.030763771 0.817403939 1 11.27754659 -8.915421811 0.480598976 1.01860082 0.84994119 0 0.103763399 1.519746853 0.578129967 0.119755366 0.027816936 1.22E-09 8.915421811 -0.168659629 NMTVEQLLTGS(ph)PTSPTVEPEKPTR ddPTM_HeLa_CUDC101_4h_R1 3 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 NMTVEQLLT(0.062)GS(0.925)PT(0.013)SPTVEPEKPTR;NMTVEQLLT(0.001)GS(0.995)PT(0.004)SPTVEPEKPTR;NMTVEQLLT(0.002)GS(0.967)PT(0.031)SPTVEPEKPTR ;; 142.21 8.53E-09 81637200 13001.2 10414.2 10607 11069.7 12447.9 11050.6 11239.3 11420 12073 12461.9 TRUE FALSE FALSE 11477.21904 10735.04916 11180.4465 11521.17021 11529.64322 10839.82822 11672.80357 12720.00664 11575.34583 12387.77606 0.926495521 0.86658405 0.902538635 0.930043468 0.930727449 0.875042313 0.942284031 1.026819227 0.934416781 1 13.59662959 -8.914538904 0.915700872 0.996803065 0.922691484 0.052869501 0.045783204 0.495644734 0.801482614 0.021814973 0.008299181 1.22E-09 8.914538904 -0.07411158 EQSELDQDLDDVEEVEEEETGEETK ddPTM_HeLa_CUDC101_4h_R1 1 EQSELDQDLDDVEEVEEEETGEETK 25 0 P55209;F5H4R6;P55209-2;F8W020;F8W0J6;F8VXI6;F8VUX1;F8VY35;H0YIV4;F8VVB5 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 0 146.04 1.09E-10 9407800 3620.6 2603.9 2529.7 2322.5 2310.3 2379.9 1957.6 1835.9 3031.4 3390.2 FALSE FALSE TRUE 3196.198756 2684.123073 2666.463234 2417.221589 2139.873772 2334.507373 2033.105288 2044.891435 2906.444409 3370.03494 0.948417098 0.796467432 0.791227178 0.717268999 0.634970797 0.692724976 0.603289083 0.60678642 0.862437471 1 11.71854783 -6.709824427 0.677256546 0.993192752 0.614354533 0.853865254 0.05066115 0.081248804 0.07604799 0.007001906 0.012429925 1.95E-07 6.709824427 -0.37883822 EQSELDQDLDDVEEVEEEETGEETKLK ddPTM_HeLa_CUDC101_4h_R1 1 EQSELDQDLDDVEEVEEEETGEETKLK 27 1 P55209;F5H4R6;P55209-2;F8W020;F8W0J6;F8VXI6;F8VUX1;F8VY35;H0YIV4;F8VVB5 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 0 147.76 3.93E-11 4497800 1372.7 1232.1 1056.6 1129.4 1101.3 1467.4 1348.8 1415.9 1269.6 1350.2 FALSE FALSE TRUE 1211.794187 1270.059541 1113.722992 1175.461814 1020.059293 1439.41179 1400.823668 1577.080333 1217.266551 1342.16895 0.902862629 0.94627397 0.829793441 0.875792733 0.760008114 1.072452011 1.043701441 1.175023705 0.906939883 1 10.39035057 -5.032489922 24.18127845 0.92539725 1.096541187 0.600430866 0.073997093 272.7459983 202996.8502 0.011743444 0.029972357 9.28E-06 5.032489922 0.171143938 DTYSDRS(ph)GSS(ph)SPDSEITELK ddPTM_HeLa_CUDC101_4h_R1 2 DTYSDRSGSSSPDSEITELK 20 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 DT(0.006)Y(0.009)S(0.024)DRS(0.804)GS(0.218)S(0.464)S(0.475)PDSEITELK;DT(0.019)Y(0.074)S(0.091)DRS(0.795)GS(0.044)S(0.769)S(0.208)PDSEITELK ; 92.096 0.0018017 36525000 5731.9 4413.3 4390.1 4521.9 4816.9 4984.4 5129.5 4534.3 4589.1 7298.4 TRUE FALSE FALSE 5060.015371 4549.268542 4627.442085 4706.322627 4461.566884 4889.330875 5327.346533 5050.466384 4399.935356 7254.988792 0.697453231 0.627053835 0.637828978 0.648701571 0.614965372 0.67392673 0.734301139 0.696137035 0.606470317 1 12.82475767 -8.913602592 0.669843422 1.011971454 0.660174695 0 0.124998271 0.171561628 0.138127452 0.032693693 0.009485265 1.22E-09 8.913602592 -0.351796759 RSVICDIS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 1 RSVICDISPLR 11 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 RSVICDIS(1)PLR 66.784 0.035915 3088600 2229.9 2151.4 1930 2005.8 2344.7 1785.7 1798 1564.7 2489 1673.5 TRUE FALSE FALSE 1968.514502 2217.682084 2034.341638 2087.605194 2171.736152 1751.640748 1867.349462 1742.819123 2386.402367 1663.545948 1.183324395 1.333105399 1.222894769 1.254912855 1.305486125 1.052956037 1.122511503 1.047653133 1.434527474 1 10.700046 -8.911024551 0.928368333 1.008646943 1.192565923 0 0.161391218 0.452568833 0.754419673 0.049513861 0.019121509 1.23E-09 8.911024551 0.18391898 EQSSTVNAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EQSSTVNAKK 10 1 Q9NUQ8-2;Q9NUQ8 Q9NUQ8-2 ABCF3 ATP-binding cassette sub-family F member 3 0 1 ; EQSSTVNAK(1)K;EQSSTVNAK(1)K 98.754 0.0061367 0 0 149.89 0 178.31 0 166.74 0 151.93 215.77 0 FALSE TRUE FALSE 0 154.5079332 0 185.5822525 0 163.5597123 0 169.2250971 206.8758693 0 0 KSPGGGGGGGSGNDNNQAATK(ac)SPR ddPTM_HeLa_CUDC101_4h_R1 2 KSPGGGGGGGSGNDNNQAATKSPR 24 2 Q9NS37;E9PIM0;J3KN20 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 0 1 ; KSPGGGGGGGSGNDNNQAATK(1)SPR;KSPGGGGGGGSGNDNNQAATK(1)SPR 182.67 5.32E-16 1108180 357.64 305.34 370.3 346.61 255.531 228.64 208.44 121.26 459.42 455.48 FALSE TRUE FALSE 315.7179813 314.7471635 390.3195381 360.746254 236.6809872 224.2790729 216.4796006 135.0637483 440.4825131 452.7707847 0.697302017 0.695157846 0.862068736 0.796752499 0.522739088 0.495347934 0.47812184 0.29830491 0.97285984 1 8.82263706 -4.898362942 0.198381196 1.011386196 3.07E-15 0.820659811 0.092850128 4.267129211 0.201547816 0.166458112 1.107340385 1.26E-05 4.898362942 -1.011386196 SKEFVSS(ph)DESSSGENK ddPTM_HeLa_CUDC101_4h_R1 1 SKEFVSSDESSSGENK 16 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 SKEFVS(0.186)S(0.495)DES(0.125)S(0.076)S(0.118)GENK 125.52 0.0025764 4799400 1752.1 1440.6 1556.8 1573.2 1343.4 975.59 1015.2 502.14 1796.2 2105.6 TRUE FALSE FALSE 1546.721494 1484.983178 1640.965317 1637.361896 1244.300058 956.9822462 1054.356604 559.3015879 1722.159876 2093.075798 0.738970608 0.709474153 0.783997082 0.78227549 0.594483993 0.457213373 0.50373551 0.267215162 0.822789064 1 11.03140884 -4.883972835 0.225038304 0.997709307 1.01E-21 0.825021317 0.084167854 2.557029064 0.143498375 0.090645387 0.7178878 1.31E-05 4.883972835 -0.997709307 down LRRPS(ph)PPEPWDEEDGASCSTFFGSEER ddPTM_HeLa_CUDC101_4h_R1 1 LRRPSPPEPWDEEDGASCSTFFGSEER 27 2 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 LRRPS(1)PPEPWDEEDGASCSTFFGSEER 81.839 5.99E-06 20144000 781.93 816.62 604.86 879.39 742.59 693.48 696.93 578.74 757.24 306.21 TRUE FALSE FALSE 690.2733507 841.7790943 637.5605612 915.2553252 687.8106151 680.2530244 723.8108236 644.6214223 726.0262467 304.3886493 2.26773683 2.765474653 2.094560893 3.006864176 2.25964607 2.234817317 2.377916605 2.117757754 2.385194876 1 8.249770751 -8.910973144 0.694942234 0.964650029 2.415020395 0 0.500847066 0.250533828 0.219543732 0.19932442 0.059848808 1.23E-09 8.910973144 1.450370366 FAS(ph)DDEHDEHDENGATGPVK ddPTM_HeLa_CUDC101_4h_R1 6 FASDDEHDEHDENGATGPVK 20 0 P05455 P05455 SSB Lupus La protein 1 0 FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK ;;;;; 145.67 1.25E-05 2356022000 28310.2 22170.2 21833 21564 21955.7 21358.4 20059.3 16860.3 23943.6 32926.8 TRUE FALSE FALSE 24991.72127 22853.23758 23013.35802 22443.47313 20336.07175 20951.02411 20832.99392 18779.6084 22956.63467 32730.94993 0.763550136 0.69821492 0.703106939 0.685695746 0.62131016 0.64009826 0.636492188 0.573756901 0.701373921 1 14.99836785 -8.910094225 0.232442721 1.184325389 0.559214199 0.260481179 0.095742195 0.401551001 0.038967448 0.078675375 0.021859415 1.23E-09 8.910094225 -0.62511119 GSSLSSESS(ph)PVSSPATNHSS(ph)PASTPK ddPTM_HeLa_CUDC101_4h_R1 1 GSSLSSESSPVSSPATNHSSPASTPK 26 0 Q14687-3;Q14687 Q14687-3 GSE1 Genetic suppressor element 1 2 0 GS(0.004)S(0.01)LS(0.012)S(0.016)ES(0.183)S(0.754)PVS(0.019)S(0.005)PAT(0.002)NHS(0.193)S(0.573)PAS(0.121)T(0.108)PK 71.623 0.00026889 0 2613.4 2022.9 1872.9 1559.3 3141.9 2415.3 2369.4 2191.7 3266.6 2923.3 TRUE FALSE FALSE 2307.061214 2085.223151 1974.154639 1622.894994 2910.128297 2369.232177 2460.788552 2441.194269 3131.949365 2905.912082 0.793919826 0.717579573 0.679358007 0.558480418 1.001450909 0.815314473 0.846821405 0.840078502 1.077785314 1 11.50477534 -8.907553953 0.867813188 0.993104393 0.781222943 0.429915756 0.114645295 0.50921587 0.73375054 0.06310458 0.023104149 1.24E-09 8.907553953 -0.21188145 EQVEPTPEDEDDDIELR ddPTM_HeLa_CUDC101_4h_R1 2 EQVEPTPEDEDDDIELR 17 0 A0A087WZG9;B4DSP0;Q86TG7-2;A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7 A0A087WZG9 PEG10 Retrotransposon-derived protein PEG10 0 0 ; ; 295.37 4.38E-122 122496000 7202.7 5749.9 5381.6 5623.7 6175.7 5292.2 5224.6 5739.2 5611 5652.3 FALSE FALSE TRUE 6358.410425 5927.047604 5672.545574 5853.058794 5720.130915 5191.260102 5426.114572 6392.527329 5379.712205 5618.679868 1.13165558 1.054882596 1.009586897 1.041714234 1.018056029 0.923928792 0.965727662 1.13772763 0.957469073 1 12.45601549 -6.800736714 5.223916526 1.063622607 1.010772878 0 0.068317267 0.330088769 21.38317635 0.011300256 0.015169461 1.58E-07 6.800736714 -0.052849728 EQWIQDAEECDR ddPTM_HeLa_CUDC101_4h_R1 2 EQWIQDAEECDR 12 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 0 ; ; 270.02 1.74E-84 32163000 4044.6 3126.5 3458.3 3761.1 3770 3404.2 3333.7 2965.5 3207 1289.15 FALSE FALSE TRUE 3570.498119 3222.823759 3645.266159 3914.493915 3491.894611 3339.270557 3462.281926 3303.080533 3074.806103 1281.482078 2.786225558 2.514919103 2.844570533 3.054661459 2.724887589 2.605787949 2.701779435 2.577547192 2.399414049 1 10.32359759 -9.200591734 0.668309619 0.827612701 2.755949572 0.286448165 0.452752262 0.155457763 0.108569304 0.17361732 0.035404396 6.30E-10 9.200591734 1.928336871 CIS(ph)PEGVNGNR ddPTM_HeLa_CUDC101_4h_R1 2 CISPEGVNGNR 11 0 G5E9L9;Q8N568-2;Q8N568;A0A0U1RR70;Q8N568-3 G5E9L9 DCLK2 Serine/threonine-protein kinase DCLK2 1 0 CIS(1)PEGVNGNR;CIS(1)PEGVNGNR ; 120.03 0.0042348 14428700 3207 3157.4 3000.9 3040 2857.7 2736.4 2574.8 2779.1 3199.6 1697.22 TRUE FALSE FALSE 2831.080321 3254.675752 3163.137731 3163.98434 2646.893164 2684.207729 2674.110898 3095.46151 3067.711134 1687.12486 1.678050267 1.929125596 1.874868782 1.875370588 1.568878052 1.590995304 1.585010666 1.834755437 1.818307113 1 10.72035103 -8.907453935 0.76277508 1.000157284 1.741143541 0 0.278504888 0.228572823 0.247480676 0.095665182 0.031286237 1.24E-09 8.907453935 0.740986257 ERAGATSR ddPTM_HeLa_CUDC101_4h_R1 1 ERAGATSR 8 1 Q86WJ1;Q86WJ1-2;Q86WJ1-3;A0A494C1P7;A0A0A0MRH8;A0A494C179;A0A494C111;A0A494C1H1;A0A087WTM4;A0A494C1F3;A0A494C0J6;A0A494C1I3;A0A494C0B8;A0A494C1S1;A0A087WWW4;A0A087WZM7;A0A494C1H0 Q86WJ1 CHD1L Chromodomain-helicase-DNA-binding protein 1-like 0 0 25.737 0.040136 393910 0 0 177.2 0 124.93 0 138.29 0 206.88 142.47 FALSE FALSE TRUE 0 0 186.779968 0 115.7141628 0 143.6238916 0 198.3523188 141.6225821 0 0 1.318857242 0 0.817060112 0 1.014131288 0 1.400569852 1 7.145907515 -9.577106854 1.384152893 0.997317695 0.364008626 0.278877129 0.489010296 0.525866113 1.818572709 0.305405779 0.072697928 2.65E-10 9.577106854 -0.633309069 ERAQRANKEK ddPTM_HeLa_CUDC101_4h_R1 1 ERAQRANKEK 10 3 Q9NQR7 Q9NQR7 CCDC177 Coiled-coil domain-containing protein 177 0 0 90.657 0.011459 0 0 179.33 241.86 412.99 477.75 492.36 542.84 292.7 0 0 FALSE FALSE TRUE 0 184.8549447 254.9356832 429.8335173 442.5073343 482.9690533 563.7775206 326.0197849 0 0 0 ERDFYFGK ddPTM_HeLa_CUDC101_4h_R1 1 ERDFYFGK 8 1 Q15691;Q15555-4;Q15555-5;Q15555-3;Q15555 Q15691 MAPRE1;MAPRE2 Microtubule-associated protein RP/EB family member 1;Microtubule-associated protein RP/EB family member 2 0 0 95.815 0.028208 10105000 4241.2 3653.3 3383.4 3309.5 3661.7 3493.1 3206.3 3909.1 3518.8 2812.7 FALSE FALSE TRUE 3744.052965 3765.853843 3566.316838 3444.475715 3391.583686 3426.474937 3329.968065 4354.096143 3373.753575 2795.969935 1.339089136 1.346886386 1.275520453 1.231943045 1.213025807 1.225504929 1.190988509 1.557275737 1.206648731 1 11.44913313 -9.285348977 0.922996741 0.993053745 1.289947152 0.234670027 0.117954234 0.364557352 0.536597891 0.074659746 0.018395217 5.18E-10 9.285348977 0.296893407 LPSS(ph)PVYEDAASFK ddPTM_HeLa_CUDC101_4h_R1 4 LPSSPVYEDAASFK 14 0 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 1 0 LPS(0.011)S(0.989)PVYEDAASFK;LPS(0.001)S(0.999)PVYEDAASFK;LPSS(1)PVYEDAASFK;LPS(0.101)S(0.899)PVYEDAASFK ;;; 182.02 8.03E-11 1852357000 19793.8 16503 15977.3 16239.9 16771.2 14774.7 14925.6 14619.5 16613.1 21272.7 TRUE FALSE FALSE 17473.60077 17011.43787 16841.08117 16902.23332 15534.02199 14492.89721 15501.28539 16283.72479 15928.30099 21146.16903 0.826324652 0.804469019 0.79641287 0.799304748 0.734602186 0.68536751 0.733054075 0.770055548 0.753247596 1 14.3681087 -8.907149157 0.253874316 1.111827603 0.703270068 0 0.081431903 0.776313925 0.086841152 0.104339537 0.027387254 1.24E-09 8.907149157 -0.408557535 DAPSLEEVEGHVADGS(ph)ATEMGTTK ddPTM_HeLa_CUDC101_4h_R1 3 DAPSLEEVEGHVADGSATEMGTTK 24 0 Q15003;C9J470;E9PHA2;Q15003-2 Q15003 NCAPH Condensin complex subunit 2 1 0 DAPSLEEVEGHVADGS(0.397)AT(0.397)EMGT(0.183)T(0.022)K;DAPSLEEVEGHVADGS(0.999)AT(0.001)EMGTTK;DAPSLEEVEGHVADGS(0.989)AT(0.01)EMGT(0.001)TK ;; 183.44 4.64E-15 83377300 7387.6 6288.9 6931.4 6322.9 7124.1 6906.7 6192.4 5134.1 6431.1 5807.4 TRUE FALSE FALSE 6521.636727 6482.653555 7306.13245 6580.775192 6598.569336 6774.966205 6431.242942 5718.545191 6166.007336 5772.857327 1.129706895 1.122954057 1.265600731 1.139951123 1.143033504 1.173589753 1.114048482 0.990591811 1.068103192 1 12.49506985 -8.905999048 0.784155636 1.001273597 1.139934268 0.247454527 0.066465743 0.50645114 0.583589217 0.039969134 0.013415739 1.24E-09 8.905999048 0.138660671 ERDQDDHIDWLLEK ddPTM_HeLa_CUDC101_4h_R1 1 ERDQDDHIDWLLEK 14 1 P49754-2;P49754-3;P49754 P49754-2 VPS41 Vacuolar protein sorting-associated protein 41 homolog 0 0 76.759 0.018471 3397700 5392.2 4831.1 5043.6 4414 5494.3 4616.5 4754.4 4114.6 5268.6 5035.7 FALSE FALSE TRUE 4760.13449 4979.940465 5316.272272 4594.021999 5088.996435 4528.447954 4937.778801 4582.989432 5051.426078 5005.747432 0.950933812 0.994844533 1.062033661 0.917749459 1.016630684 0.904649708 0.986421881 0.915545479 1.00912524 1 12.28936979 -5.262589805 24.9999315 0.982023294 0.94062731 0.25114825 0.042355288 136.2912631 2961780.308 0.005745243 0.013560847 5.46E-06 5.262589805 -0.041395983 LGDDNLCNTPHLPPCS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 1 LGDDNLCNTPHLPPCSPPK 19 0 J3QR52;J3QLN7;Q99741;J3KTI7 J3QR52 CDC6 Cell division control protein 6 homolog 1 0 LGDDNLCNTPHLPPCS(1)PPK 90.778 0.0021495 21785000 2462.7 2183 2856.8 2812.1 2415.9 2078.7 1922.9 1362.2 1932.3 747.7 TRUE FALSE FALSE 2174.026039 2250.255643 3011.247249 2926.789593 2237.68387 2039.052261 1997.066897 1517.267342 1852.649776 743.2526471 2.925016208 3.027578376 4.051445038 3.937812538 3.010663842 2.743417422 2.686928738 2.041388413 2.492624524 1 9.537708886 -8.9052009 0.755710103 0.999487515 3.096789814 0.272524895 0.708376822 0.34106031 0.361920905 0.402606667 0.13091402 1.24E-09 8.9052009 2.097302299 HPNYS(ph)PPGSPIEK ddPTM_HeLa_CUDC101_4h_R1 2 HPNYSPPGSPIEK 13 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 HPNYS(0.992)PPGS(0.008)PIEK;HPNY(0.007)S(0.884)PPGS(0.109)PIEK ; 121.13 0.0021029 23381000 3027.4 2666.4 2641.6 2335.43 2590.9 2681.9 2333.59 2978 2558.1 2891.7 TRUE FALSE FALSE 2672.532761 2748.548624 2784.412886 2430.67893 2399.774469 2630.747226 2423.597348 3317.003483 2452.654035 2874.50004 0.929738293 0.956183192 0.968659888 0.84560059 0.834849343 0.915201666 0.843137003 1.153941011 0.853245434 1 11.48909534 -8.905040174 0.55333778 1.00644017 0.919848705 0 0.098685758 1.982752666 1.038159159 0.08576907 0.021741962 1.24E-09 8.905040174 -0.086591464 S(ph)APGTPGTPR ddPTM_HeLa_CUDC101_4h_R1 1 SAPGTPGTPR 10 0 Q16584;Q16584-2;E9PID4 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 0 S(1)APGTPGTPR 141.91 0.00014072 0 898.11 775.41 919.44 752.56 738.17 923.73 689.03 757 866.36 607.82 TRUE FALSE FALSE 792.8349072 799.299463 969.1477076 783.2526496 683.7166697 906.1113893 715.6061179 843.1738201 830.6482741 604.2046596 1.31219595 1.322895231 1.604005683 1.296336659 1.13159781 1.499676268 1.184377026 1.395510291 1.374779656 1 9.2388935 -8.904957681 0.723822106 0.995836927 1.344538045 0 0.172563147 0.455505149 0.438709975 0.088187701 0.027617122 1.24E-09 8.904957681 0.348701118 ELGTGEQPLS(ph)PTTATSPYGGGHALAGQTS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 ELGTGEQPLSPTTATSPYGGGHALAGQTSPK 31 0 A0A087WXB3;A0A087X223;A0A087WYW1;Q96NU1-4;Q96NU1-5;H7C3J6;H7BY14;A0A087WYU3;A0A087X1J5;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1 A0A087WXB3 SAMD11 Sterile alpha motif domain-containing protein 11 2 0 ELGT(0.002)GEQPLS(0.418)PT(0.269)T(0.163)AT(0.069)S(0.07)PY(0.243)GGGHALAGQT(0.231)S(0.535)PK 58.222 0.0054484 24759000 1014.5 636.68 734.49 726.72 1125.1 1022.3 1012.4 785.08 1063.2 1127.9 TRUE FALSE FALSE 895.5818479 656.2953561 774.1987511 756.3587828 1042.103615 1002.801331 1051.448607 874.4503338 1019.374446 1121.191201 0.798777093 0.585355429 0.690514473 0.674602853 0.929461107 0.894407065 0.937795986 0.779929715 0.909188768 1 10.13081661 -8.904949004 0.994801021 0.987509742 0.790153262 0.254479679 0.111503427 0.477564079 0.923812149 0.056744562 0.023304046 1.24E-09 8.904949004 -0.19735648 EREAELGAR ddPTM_HeLa_CUDC101_4h_R1 1 EREAELGAR 9 1 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YBN4;Q4VXU2;Q4VXU2-2 P11940 PABPC1;PABPC3;PABPC1L Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like 0 0 154.85 1.80E-05 0 747.78 624.67 819.67 1039.6 1009.1 783.45 881.39 787.32 899.47 788.77 FALSE FALSE TRUE 660.126362 643.9153423 863.9838396 1081.999382 934.6607034 768.5069966 915.3855075 876.9453263 862.3934659 784.078361 0.841913761 0.821238507 1.101910067 1.379963324 1.192050119 0.980140551 1.167466867 1.118440924 1.099881732 1 9.614854035 -6.61637158 6.019648188 0.916037089 1.166224321 0.447723639 0.117880652 0.125855571 6.715299548 0.018153834 0.025760235 2.42E-07 6.61637158 0.250187232 NSGS(ph)DGSPSPLLAR ddPTM_HeLa_CUDC101_4h_R1 1 NSGSDGSPSPLLAR 14 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 NS(0.021)GS(0.973)DGS(0.005)PSPLLAR 123.72 0.001238 18916000 1206.8 1040.5 895.52 942.98 1111.3 1050.8 1116.8 823.67 1196.3 1353.7 TRUE FALSE FALSE 1065.340733 1072.556572 943.93452 981.4388003 1029.321613 1030.757741 1159.87535 917.4332634 1146.988008 1345.648132 0.791693391 0.797055743 0.701472025 0.729342818 0.764926275 0.765993514 0.861945498 0.681777979 0.852368446 1 10.3940855 -8.904668002 0.579000649 1.018469931 0.756220919 0.459396814 0.064700632 0.334606894 0.194146544 0.04472921 0.011697351 1.25E-09 8.904668002 -0.262249013 S(ph)LEEEGQELPQSADVQR ddPTM_HeLa_CUDC101_4h_R1 4 SLEEEGQELPQSADVQR 17 0 P48681 P48681 NES Nestin 1 0 S(1)LEEEGQELPQSADVQR;S(1)LEEEGQELPQSADVQR;S(1)LEEEGQELPQSADVQR;S(1)LEEEGQELPQSADVQR ;;; 239.93 2.08E-70 9065600 2356.78 1754.73 1779.5 2214.63 2001.32 2101.75 2203.6 2052.83 2669.81 2368.27 TRUE FALSE FALSE 2080.521821 1808.791151 1875.705153 2304.952184 1853.686611 2061.662621 2288.59359 2286.515869 2559.759302 2354.183425 0.883755191 0.768330595 0.796754039 0.979087763 0.787401097 0.87574426 0.97213903 0.971256464 1.087323645 1 11.20101102 -8.904622063 0.97256581 0.993303868 0.878266937 0.365204877 0.080336761 0.53433771 0.985224746 0.036832315 0.014865058 1.25E-09 8.904622063 -0.115036931 TTCMSSQGS(ph)DDEQIKR ddPTM_HeLa_CUDC101_4h_R1 2 TTCMSSQGSDDEQIKR 16 1 Q9P0V9-2;E7EX04;Q9P0V9;E7EW69;B5ME97;C9JEW2;C9JNR7 Q9P0V9-2 10-Sep Septin-10 1 0 TTCMS(0.004)S(0.02)QGS(0.976)DDEQIKR;TTCMSS(0.003)QGS(0.997)DDEQIKR ; 104.35 0.0015107 98496000 5493.1 4718.9 4451.3 4774.1 4989.7 4800.5 4231.2 4735.5 5329.9 5239.7 TRUE FALSE FALSE 4849.207145 4864.283716 4691.950742 4968.808433 4621.619772 4708.938461 4394.398801 5274.570178 5110.199266 5208.534031 0.931011896 0.933906486 0.90081983 0.953974459 0.887316804 0.904081347 0.843692059 1.012678452 0.981120453 1 12.34666166 -8.90380175 0.432024416 1.015436663 0.910739504 0.299318584 0.042268201 1.252020928 0.380994875 0.057895836 0.013182291 1.25E-09 8.90380175 -0.104697159 ASS(ph)PAESSPEDSGYMR ddPTM_HeLa_CUDC101_4h_R1 1 ASSPAESSPEDSGYMR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 AS(0.001)S(0.995)PAES(0.002)S(0.001)PEDSGYMR 184 1.01E-10 11234000 1349.1 1225.3 1279.7 1108 1293.8 1044.7 1168.5 1075 1083.7 1074.7 TRUE FALSE FALSE 1190.960543 1263.050041 1348.884453 1153.189029 1198.358952 1024.774088 1213.569436 1197.373655 1039.029427 1068.307637 1.114810474 1.182290566 1.262636722 1.079454073 1.121735828 0.959249988 1.135973754 1.120813531 0.972593841 1 10.06111144 -8.903765783 0.944520281 1.005996209 1.120569285 0.343180915 0.073322612 0.550798214 0.954178492 0.037569203 0.014822988 1.25E-09 8.903765783 0.114573075 LDS(ph)SPVSSPR ddPTM_HeLa_CUDC101_4h_R1 1 LDSSPVSSPR 10 0 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 LDS(0.591)S(0.405)PVS(0.003)S(0.001)PR 86.463 0.033826 50279000 2541.5 2011 2344 1861.7 1889.3 2249 2002.4 2202.8 2211.7 2909.2 TRUE FALSE FALSE 2243.589223 2072.956526 2470.72373 1937.628173 1749.930103 2206.104072 2079.633239 2453.557848 2120.53279 2891.895949 0.775819484 0.716815737 0.854361213 0.670020017 0.605115168 0.762857347 0.719124504 0.848425355 0.733267319 1 11.49779993 -8.903710891 0.519366048 1.030152288 0.72761135 0 0.108153196 0.542414678 0.246543193 0.07957161 0.019448487 1.25E-09 8.903710891 -0.302540938 EREEFYR ddPTM_HeLa_CUDC101_4h_R1 1 EREEFYR 7 1 G3V2V6;H0YJH8;G3V2S6;Q9Y5K8 G3V2V6 ATP6V1D V-type proton ATPase subunit D 0 0 96.19 0.002128 0 1025.6 830.79 807.53 921.79 759.52 767 743.69 616.55 990.09 943.79 FALSE FALSE TRUE 905.3807227 856.3856552 851.1875144 959.3845805 703.4917228 752.3707529 772.3743724 686.7355598 949.2780711 938.1762951 0.965043273 0.912819541 0.907278855 1.022605864 0.749850243 0.801950291 0.823272104 0.731989887 1.011833358 1 9.873715239 -5.395425824 0.457657613 0.991995952 0.696228854 0.696025129 0.057223053 0.818073173 0.21900143 0.01461586 0.110962829 4.02E-06 5.395425824 -0.295767099 SAT(ph)PVNCEQPDILVSSTPINEGQTVLDK ddPTM_HeLa_CUDC101_4h_R1 1 SATPVNCEQPDILVSSTPINEGQTVLDK 28 0 F8WF45;A0A2R8Y7M0;P82094;P82094-2 F8WF45 TMF1 TATA element modulatory factor 1 0 S(0.25)AT(0.75)PVNCEQPDILVSSTPINEGQTVLDK 100.88 9.68E-09 28237000 1922.9 1696.2 1704 1778.6 1892.3 1965.8 1426.7 1498.3 1453.4 1284.6 TRUE FALSE FALSE 1697.500577 1748.457912 1796.123394 1851.138996 1752.708799 1928.30564 1481.728297 1668.860416 1393.490237 1276.959142 1.329330376 1.369235596 1.406562932 1.449646222 1.37256451 1.510076225 1.160356857 1.306901968 1.091256714 1 10.31849665 -8.902719825 0.662043604 0.986758677 1.371455487 0.656797343 0.091119675 0.34282783 0.269994927 0.070940961 0.020633205 1.25E-09 8.902719825 0.38469681 ALPCQS(ph)PDPELEAGSAPVQAPLALVPEEAER ddPTM_HeLa_CUDC101_4h_R1 1 ALPCQSPDPELEAGSAPVQAPLALVPEEAER 31 0 J3KTM2;J3KRL7;O15534-4;O15534 J3KTM2 PER1 Period circadian protein homolog 1 1 0 ALPCQS(0.975)PDPELEAGS(0.025)APVQAPLALVPEEAER 75.034 1.15E-05 4406400 883.27 819.26 838.04 842.13 926.11 739.77 594.14 692.66 570.02 578.57 TRUE FALSE FALSE 779.7344296 844.5004295 883.3469773 876.4757014 857.7927104 725.6601198 617.0561788 771.5096146 546.5235343 575.1286399 1.355756565 1.468367894 1.535911996 1.523964624 1.491479733 1.261735322 1.072901149 1.341455739 0.950263118 1 9.167740872 -8.902417391 0.833414698 1.008851931 1.381385735 0.581669324 0.135826034 0.405004449 0.534726901 0.087194493 0.030993218 1.25E-09 8.902417391 0.372533804 QICVVMLETLSQS(ph)PPKGVTIPYRPK ddPTM_HeLa_CUDC101_4h_R1 1 QICVVMLETLSQSPPKGVTIPYRPK 25 2 Q15366-2;Q15366;Q15366-5;Q15366-8;H3BRU6;F8VZX2 Q15366-2;H3BRU6 PCBP2 Poly(rC)-binding protein 2 1 0 QICVVMLET(0.005)LS(0.09)QS(0.56)PPKGVT(0.189)IPY(0.156)RPK 66.711 0.0006517 14878000 1213.2 1254.4 1521.5 1104 1030.5 829.31 1003.4 941.42 1208.2 392.54 TRUE FALSE FALSE 1070.990535 1293.046577 1603.756892 1149.025892 954.482068 813.4922935 1042.101474 1048.587447 1158.397485 390.2051546 2.74468577 3.313760882 4.110035127 2.944671228 2.446103176 2.084781003 2.6706502 2.687272157 2.968688319 1 8.608089026 -8.901563542 0.834175141 1.043437766 2.873774326 0 0.782470129 0.319095513 0.422245266 0.337506831 0.120170199 1.25E-09 8.901563542 1.83033656 ERELEEAR ddPTM_HeLa_CUDC101_4h_R1 2 ERELEEAR 8 1 Q9Y490;H0YMT1;A0A1B0GVU7;Q9Y4G6 Q9Y490;Q9Y4G6 TLN1;TLN2 Talin-1;Talin-2 0 0 ; ; 139.97 0.0056781 12000400 4803.5 3095.8 4618.8 5215.6 4098.8 4005.6 4724.1 2470.4 5021.6 5944.2 FALSE FALSE TRUE 4240.441012 3191.177929 4868.506299 5428.314712 3796.43969 3929.199854 4906.310119 2751.62035 4814.607523 5908.843634 0.717643125 0.540068096 0.823935545 0.918676318 0.642501296 0.66496934 0.830333382 0.465678316 0.814813832 1 12.52866011 -9.092261013 0.679631268 1.020591181 0.705711417 0.210019379 0.140856818 0.646809834 0.496936298 0.11595539 0.027558129 8.09E-10 9.092261013 -0.314879764 ERELEECQR ddPTM_HeLa_CUDC101_4h_R1 1 ERELEECQR 9 1 Q9UNE7;H3BTA3;H3BS86;Q9UNE7-2;H3BUD0 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 0 0 104.01 0.0014969 0 1164.4 843.95 1158.1 1106.1 812.41 699.18 788.98 607.55 1116.1 871.26 FALSE FALSE TRUE 1027.910797 869.9510992 1220.710389 1151.211539 752.4801328 685.8443064 819.4112229 676.7110362 1070.093886 866.0777068 1.186857471 1.004472338 1.40946982 1.329224306 0.868836742 0.791896964 0.94611744 0.781351409 1.235563365 1 9.758352663 -5.646128733 9.116263916 1.125023442 0.847358295 0.583763174 0.136408045 0.193117052 14.65005004 0.021524393 0.043089353 2.26E-06 5.646128733 -0.277665147 GTPPLTPSDS(ph)PQTR ddPTM_HeLa_CUDC101_4h_R1 2 GTPPLTPSDSPQTR 14 0 Q6NZY4;Q6NZY4-2 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 0 GTPPLT(0.001)PS(0.004)DS(0.995)PQTR;GTPPLTPS(0.004)DS(0.992)PQT(0.003)R ; 236.05 1.78E-43 17316500 2118.97 1706.46 1619.33 1666.48 1882.6 1854.77 2056.32 1862.83 1797.44 2185.66 TRUE FALSE FALSE 1870.587549 1759.03401 1706.875878 1734.446258 1743.724349 1819.393353 2135.632951 2074.887037 1723.348762 2172.659597 0.860966693 0.809622461 0.785615878 0.79830557 0.802575954 0.837403777 0.982957917 0.954998675 0.793197777 1 11.08524644 -8.90062265 0.858766482 0.995504294 0.851661211 0 0.088783302 0.467340227 0.659275251 0.039115594 0.01429579 1.26E-09 8.90062265 -0.143843082 ERENMDTDDERQYQDFLEDLEEDEAIRK ddPTM_HeLa_CUDC101_4h_R1 2 ERENMDTDDERQYQDFLEDLEEDEAIRK 28 3 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 0 0 ; ; 58.324 0.0012346 6071300 3568.1 3266.2 3755.9 3535.1 4599.6 3981.2 3704.3 3795 3994.7 4195.5 FALSE FALSE TRUE 3149.852727 3366.827751 3958.955315 3679.276658 4260.296672 3905.265243 3847.176092 4227.00746 3830.036775 4170.544979 0.755261661 0.807287241 0.949265704 0.882205246 1.021520375 0.936392069 0.922463637 1.013538394 0.918354027 1 12.0260202 -6.078747052 2.022070229 0.877697159 0.965407061 0.239001242 0.071860427 0.522994709 4.215734237 0.015895706 0.030025519 8.34E-07 6.078747052 0.087709901 AVS(ph)PAVPFSR ddPTM_HeLa_CUDC101_4h_R1 3 AVSPAVPFSR 10 0 I3L2J0 I3L2J0 CIC 1 0 AVS(1)PAVPFSR;AVS(1)PAVPFSR;AVS(1)PAVPFSR ;; 124.6 0.0037132 161154000 8373.1 7448.4 7421.78 6076.7 7229.3 6742.6 7000.4 8258.2 8117.6 8260.3 TRUE FALSE FALSE 7391.617911 7677.876375 7823.023876 6324.534092 6696.008942 6613.996139 7270.407773 9198.280107 7782.989092 8211.167368 0.900190872 0.935052963 0.952729804 0.770235681 0.815475881 0.805487922 0.885429251 1.120215883 0.947854153 1 13.00337163 -8.900150655 0.546686241 1.009609764 0.885242044 0.08174053 0.093968958 1.581311783 0.807734211 0.097633255 0.024697433 1.26E-09 8.900150655 -0.12436772 EREQQIEEHRR ddPTM_HeLa_CUDC101_4h_R1 1 EREQQIEEHRR 11 2 Q16643-3;Q16643;Q16643-2;D6R9W4 Q16643-3 DBN1 Drebrin 0 0 70.942 0.027763 1702500 428.92 365.12 391.48 455.46 476.23 381.65 495.79 375.59 335.06 454.19 FALSE FALSE TRUE 378.6426478 376.3689144 412.644593 474.0356275 441.0994617 374.3706621 514.9127864 418.3456474 321.248685 451.4884577 0.838654104 0.833618021 0.913964878 1.049939637 0.976989454 0.829192099 1.140478295 0.926592121 0.711532442 1 8.818545295 -6.376337691 13.01132462 0.912963388 0.984228204 0.176305307 0.10775439 1.340096197 144.9776471 0.014841388 0.022671012 4.20E-07 6.376337691 0.071264816 ERESLQQMAEVTR ddPTM_HeLa_CUDC101_4h_R1 1 ERESLQQMAEVTR 13 1 K7ELL7;P14314-2;P14314;K7EPW7;K7EKX1;K7EJ70 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 0 145.14 0.00068722 14860000 671.9 685.97 696.68 691.44 720.02 607.69 708.27 932.89 921.31 616.08 FALSE FALSE TRUE 593.1409005 707.1039226 734.3446281 719.6399119 666.9055591 596.0993257 735.5882112 1039.086427 883.3332118 612.4155288 0.968526879 1.154614619 1.199095375 1.175084364 1.088975586 0.973357627 1.201125995 1.696701631 1.442375594 1 9.258367055 -4.289857313 2.574394752 1.032655789 1.813314834 0.474261595 0.156255832 0.154405724 1.357459842 0.014842447 0.252839038 5.13E-05 4.289857313 0.780659046 SRVPVRPPQQYS(ph)DDEDDYEDDEEDDVQNTNSALR ddPTM_HeLa_CUDC101_4h_R1 1 SRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALR 34 2 Q92560;F8W6N3 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1;Ubiquitin carboxyl-terminal hydrolase 1 0 S(0.003)RVPVRPPQQY(0.197)S(0.775)DDEDDY(0.025)EDDEEDDVQNTNSALR 71.098 1.98E-06 9253500 904.31 977.75 844.42 859.82 842.42 646.33 665.7 906.57 706.09 408.82 TRUE FALSE FALSE 798.3081526 1007.873319 890.0718994 894.8871761 780.2763549 634.0023321 691.376272 1009.770264 676.9846713 406.3883205 1.964397382 2.480074519 2.190200492 2.202049446 1.920026526 1.560089944 1.701270035 2.484742335 1.665856614 1 8.66671513 -8.899402933 0.808695702 1.016226726 2.046710845 0.363948426 0.345378397 0.310780716 0.384259505 0.183427381 0.063710263 1.26E-09 8.899402933 1.030484119 GPTTGEGALDLSDVHS(ph)PPKSPEGK ddPTM_HeLa_CUDC101_4h_R1 2 GPTTGEGALDLSDVHSPPKSPEGK 24 1 O95684;O95684-2 O95684 FGFR1OP FGFR1 oncogene partner 1 0 GPTTGEGALDLS(0.003)DVHS(0.982)PPKS(0.015)PEGK;GPTTGEGALDLS(0.002)DVHS(0.679)PPKS(0.319)PEGK ; 115.74 1.19E-07 53340000 17116.7 12763.9 12737.2 12924.6 16760.6 14471.3 14579 17273.3 15131.7 19545.1 TRUE FALSE FALSE 15110.30637 13157.14063 13425.81156 13451.72105 15524.20393 14195.28406 15141.31691 19239.62265 14507.96492 19428.84488 0.777725411 0.677196237 0.691024693 0.692358251 0.799028662 0.730629338 0.77932152 0.990260758 0.746722979 1 14.24591251 -8.899221627 0.837569595 0.994177895 0.761061577 0 0.114051968 0.368354035 0.492107248 0.049630493 0.01777738 1.26E-09 8.899221627 -0.233116318 MT(ph)FVQFRR ddPTM_HeLa_CUDC101_4h_R1 1 MTFVQFRR 8 1 Q96LQ0 Q96LQ0 PPP1R36 Protein phosphatase 1 regulatory subunit 36 1 0 MT(1)FVQFRR 89.886 0.02588 5901700 1785.1 1293.7 1333.3 1529.3 1427.3 1748.1 1485.7 1890.3 1527.2 1872.4 TRUE FALSE FALSE 1575.853284 1333.557364 1405.382231 1591.671464 1322.010923 1714.757905 1543.003947 2105.484111 1464.24817 1861.262882 0.846658094 0.716479857 0.755069176 0.855156722 0.710276305 0.921287327 0.829009143 1.131212647 0.786696057 1 10.86206612 -8.899206912 0.95644096 0.991506717 0.838741431 0 0.131264115 0.600119275 1.06876158 0.054620348 0.02186851 1.26E-09 8.899206912 -0.152765286 SEDEDS(ph)LEEAGSPAPGPCPR ddPTM_HeLa_CUDC101_4h_R1 1 SEDEDSLEEAGSPAPGPCPR 20 0 Q8TBB5-2;Q8TBB5-3;Q8TBB5 Q8TBB5-2 KLHDC4 Kelch domain-containing protein 4 1 0 S(0.001)EDEDS(0.999)LEEAGSPAPGPCPR 178.88 1.24E-18 0 320.99 425.78 232.71 216.69 359.03 298.5 282.13 200.41 366.38 153.4 TRUE FALSE FALSE 283.3640388 438.8977771 245.2910065 225.5275548 332.5450722 292.8066098 293.0118486 223.2238643 351.2776613 152.48757 1.85827631 2.878252812 1.608596731 1.478989762 2.180801178 1.920199855 1.921545793 1.463882363 2.303647841 1 7.252547836 -8.897840108 0.902761537 1.036277847 1.917336945 0 0.552339747 0.392296175 0.617303832 0.203259117 0.077724697 1.27E-09 8.897840108 0.881059098 T(ph)TSPPEVSGYSYEK ddPTM_HeLa_CUDC101_4h_R1 2 TTSPPEVSGYSYEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.824)T(0.156)S(0.02)PPEVSGYSYEK;T(0.989)T(0.007)S(0.003)PPEVSGYSYEK ; 138.31 0.0027919 2546400000 9128.4 7639.4 7375.2 7736.6 8560 7734.4 7471.7 7060.9 8739.2 8862.8 TRUE FALSE FALSE 8058.38279 7874.760859 7773.925621 8052.131988 7928.545854 7586.879206 7759.885972 7864.684315 8378.966477 8810.083671 0.914677214 0.893834968 0.882389533 0.913967709 0.899939904 0.861158587 0.880795945 0.892691217 0.951065482 1 13.10494001 -8.895841447 0.387221005 1.026044228 0.880535121 0.730820057 0.019741167 0.396077236 0.09650144 0.023992294 0.005452786 1.27E-09 8.895841447 -0.145509107 ERLDQPMTEIVSR ddPTM_HeLa_CUDC101_4h_R1 2 ERLDQPMTEIVSR 13 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 ; ; 182.25 9.37E-11 21516000 2642.1 2368.6 2338.1 2307.8 2956.5 2672 2262.9 2230.5 2525.3 2380.3 FALSE FALSE TRUE 2332.397043 2441.573759 2464.504758 2401.922059 2738.404885 2621.036052 2350.180811 2484.411104 2421.206065 2366.14187 0.98573846 1.031879698 1.041571002 1.015121743 1.157329119 1.107725655 0.993254395 1.049984 1.023271722 1 11.20832086 -6.718665066 1.351212538 0.993383222 1.068403733 0.262639379 0.043907684 0.334989223 1.233103162 0.00791657 0.01202276 1.91E-07 6.718665066 0.07502051 ERLELCDER ddPTM_HeLa_CUDC101_4h_R1 2 ERLELCDER 9 1 P07919 P07919 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" 0 0 ; ; 133.99 0.0033204 18375300 10646.1 8828.3 6814.6 9684.6 7770.8 8062.6 7308.6 7654.5 6030.1 3460.8 FALSE FALSE TRUE 9398.180296 9100.289459 7183.017889 10079.57985 7197.563566 7908.819338 7590.49515 8525.857339 5781.536726 3440.215008 2.731858409 2.645267647 2.087956094 2.929927294 2.092184224 2.298931701 2.206401383 2.478292002 1.680574241 1 11.74828302 -9.315605222 0.959455964 0.970279967 2.439745718 0.615393022 0.330083479 0.195149601 0.311528637 0.203254176 0.049881624 4.83E-10 9.315605222 1.469465751 AGAPGALSPS(ph)YDGGLHGLQSK ddPTM_HeLa_CUDC101_4h_R1 1 AGAPGALSPSYDGGLHGLQSK 21 0 K7ENH8;A0A0A0MRB7;X6REB3;P15923-2;P15923;P15923-3 K7ENH8 TCF3 Transcription factor E2-alpha 1 0 AGAPGALS(0.033)PS(0.831)Y(0.136)DGGLHGLQSK 126.09 6.32E-07 6473600 2077.7 1545.5 1496.9 1740.3 2283.8 1845.8 1941.7 1457.1 2266.9 2236.2 TRUE FALSE FALSE 1834.155156 1593.115023 1577.826942 1811.276956 2115.328624 1810.59444 2016.592019 1622.970374 2173.457423 2222.898983 0.825118536 0.7166835 0.709805958 0.814826481 0.951608076 0.814519442 0.907190131 0.730114318 0.977758071 1 11.11822667 -8.895320084 0.880518779 0.993341396 0.812921236 0.475768295 0.074915448 0.397732571 0.593263007 0.041918943 0.015737039 1.27E-09 8.895320084 -0.18042016 AS(ph)PVSFQELNR ddPTM_HeLa_CUDC101_4h_R1 1 ASPVSFQELNR 11 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 AS(1)PVSFQELNR 179.59 1.02E-07 22791000 585.44 431.74 554.22 355.97 582.94 532.46 489.76 548.5 600.66 610.4 TRUE FALSE FALSE 516.8156107 445.0413977 584.1828096 370.4879952 539.9376776 522.3042126 508.6502073 610.9390229 575.9005406 606.7693137 0.851749749 0.733460621 0.962775797 0.610591187 0.889856599 0.860795365 0.83829257 1.006871984 0.949126015 1 9.245004315 -8.894717118 0.837204681 0.996093595 0.839862349 0.187877887 0.105961982 0.619645514 0.828016252 0.055855073 0.020094374 1.27E-09 8.894717118 -0.156231246 DRSS(ph)PPPGYIPDELHQVAR ddPTM_HeLa_CUDC101_4h_R1 1 DRSSPPPGYIPDELHQVAR 19 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 DRS(0.211)S(0.764)PPPGY(0.025)IPDELHQVAR 96.504 0.0011845 137910000 2163.3 2055.8 1630.6 1973.3 1677.6 1819.4 1716.6 1939.8 2011.8 2176.2 TRUE FALSE FALSE 1909.721253 2119.136761 1718.755168 2053.779703 1553.84679 1784.697976 1782.809837 2160.618991 1928.872752 2163.255866 0.882799526 0.979605231 0.794522366 0.949392874 0.718290802 0.825005495 0.824132672 0.998781062 0.891652616 1 11.0789886 -8.892527496 0.378440588 1.03063904 0.849160609 0.064837295 0.087877663 1.938073436 0.451737964 0.14459523 0.033006917 1.28E-09 8.892527496 -0.181478431 ERPGLGSENMDR ddPTM_HeLa_CUDC101_4h_R1 1 ERPGLGSENMDR 12 1 A0A0A0MSJ0;Q86XP3-2;Q86XP3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 0 0 104.07 0.010255 6499600 989.69 1009.2 1054.5 1236.2 1117.4 824.33 914.53 1070.9 1013.2 999.84 FALSE FALSE TRUE 873.6800385 1040.292256 1111.50946 1286.617579 1034.971628 808.6072787 949.8037284 1192.806927 971.4354672 993.8929072 0.879048469 1.046684455 1.118339261 1.294523354 1.041331134 0.813575862 0.95563991 1.200136271 0.977404568 1 9.956946598 -7.135136202 6.558538525 0.943058438 1.064004753 0.149068225 0.125766071 0.360394756 17.87391176 0.022725781 0.027901608 7.33E-08 7.135136202 0.120946315 VSGTLDTPEKT(ph)VDSQGPTPVCTPTFLER ddPTM_HeLa_CUDC101_4h_R1 1 VSGTLDTPEKTVDSQGPTPVCTPTFLER 28 1 H7BZL0;Q9BYG3;C9J808 H7BZL0 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 VSGT(0.001)LDT(0.215)PEKT(0.675)VDS(0.103)QGPT(0.005)PVCTPTFLER 81.94 1.88E-06 33966000 1264.7 1064.2 1362 1066.2 1236.4 1245 936.84 831.18 1659.8 888.76 TRUE FALSE FALSE 1116.453783 1096.986741 1435.63384 1109.684245 1145.193235 1221.253699 972.9742326 925.7981715 1591.382341 883.473616 1.263709253 1.241674591 1.624987791 1.256046841 1.296239315 1.382331829 1.101305364 1.047906983 1.801278853 1 9.787043241 -8.892053059 0.816712202 1.00599333 1.283998596 0 0.288550261 0.558893556 0.707733106 0.088995138 0.031423035 1.28E-09 8.892053059 0.278005266 NDFMGSLS(ph)FGIS(ph)ELQK ddPTM_HeLa_CUDC101_4h_R1 1 NDFMGSLSFGISELQK 16 0 I3L1Z0;P05771;P05771-2 I3L1Z0 PRKCB Protein kinase C beta type 2 0 NDFMGSLS(1)FGIS(1)ELQK 69.721 0.0025826 0 707.6 608.11 803.44 719.84 541.99 575.76 604.69 473.67 705.66 457.96 TRUE FALSE FALSE 624.6562007 626.8451483 846.8763967 749.1981866 502.0084775 564.7783373 628.0130959 527.5906782 676.5723961 455.2360336 1.372158956 1.376967336 1.860301765 1.645735687 1.102743281 1.240627489 1.379532923 1.158938747 1.486201325 1 8.830470946 -8.891904626 0.853907748 1.012363652 1.397911008 0 0.256824435 0.560807488 0.783074008 0.125229936 0.04596116 1.28E-09 8.891904626 0.385547356 GPGEPDS(ph)PTPLHPPTPPILSTDR ddPTM_HeLa_CUDC101_4h_R1 1 GPGEPDSPTPLHPPTPPILSTDR 23 0 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 GPGEPDS(0.5)PT(0.5)PLHPPTPPILSTDR 70.704 0.001265 27998000 720.03 504.02 647.32 587.22 713.71 690.4 447.9 578.74 565.17 787.9 TRUE FALSE FALSE 635.6291749 519.5482588 682.3160772 611.1693698 661.0610352 677.2317703 465.175653 644.6214223 541.8734534 783.2135358 0.811565615 0.663354545 0.871175032 0.780335556 0.844036786 0.864683435 0.593932091 0.823046836 0.691859153 1 9.613261888 -8.890640019 0.602358771 1.015022376 0.775022117 0 0.127289473 0.590426845 0.3772405 0.073261803 0.020038621 1.29E-09 8.890640019 -0.240000259 SSS(ph)ASSPEMK ddPTM_HeLa_CUDC101_4h_R1 3 SSSASSPEMK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SS(0.002)S(0.731)AS(0.267)SPEMK;S(0.001)S(0.003)S(0.996)ASSPEMK;SS(0.005)S(0.992)AS(0.003)SPEMK ;; 169.82 3.64E-07 69172100 18582.1 9708.8 17416.5 18532.8 15280.9 15983.4 20178.8 10654.7 19375.5 21429.5 TRUE FALSE FALSE 16403.93441 10007.91662 18358.08867 19288.64769 14153.65845 15678.54328 20957.10308 11867.58798 18576.83369 21302.03638 0.770064144 0.469810324 0.861799705 0.905483746 0.664427485 0.736011478 0.983807496 0.557110493 0.872068443 1 14.37870373 -8.887646982 0.904984222 0.989824783 0.752663339 0.186260998 0.151510222 0.526440838 0.834579835 0.073167284 0.028326674 1.30E-09 8.887646982 -0.237161445 RCAT(ph)PVIIDEILPSKK ddPTM_HeLa_CUDC101_4h_R1 2 RCATPVIIDEILPSKK 16 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 RCAT(1)PVIIDEILPSKK;RCAT(1)PVIIDEILPSKK ; 115.38 0.00085656 45324000 10362.6 9338.1 9270.7 8465.6 10166.1 8379.9 8148 9781.9 11205.1 8213.5 TRUE FALSE FALSE 9147.911737 9625.795793 9771.902084 8810.863759 9416.167057 8220.067369 8462.271089 10895.43196 10743.22104 8164.645737 1.12042972 1.178960619 1.196855614 1.079148324 1.153285441 1.006788002 1.036452941 1.334464753 1.315822068 1 12.99517457 -8.887288592 0.806780748 1.002186129 1.131674074 0 0.130674641 0.676679085 0.835206493 0.049943554 0.017535653 1.30E-09 8.887288592 0.129487945 ERPSQPEGLR ddPTM_HeLa_CUDC101_4h_R1 1 ERPSQPEGLR 10 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 0 92.943 0.029931 2503400 1043 1035.7 912.56 1047.1 1118.7 1070.4 872.87 852.29 1010.8 1159.4 FALSE FALSE TRUE 920.7411211 1067.608689 961.8957539 1089.805264 1036.17573 1049.983903 906.5368883 949.3112485 969.1343962 1152.503837 0.798905037 0.926338512 0.834613927 0.945597948 0.899064885 0.911045907 0.786580364 0.823694653 0.840894724 1 10.17055584 -9.507546542 1.232079391 1.000684205 0.861437781 0 0.070814007 0.333109027 0.897903158 0.03938217 0.009322852 3.11E-10 9.507546542 -0.139246424 RESESES(ph)DET(ph)PPAAPQLIK ddPTM_HeLa_CUDC101_4h_R1 2 RESESESDETPPAAPQLIK 19 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 RES(0.17)ES(0.301)ES(0.557)DET(0.972)PPAAPQLIK;RES(0.058)ES(0.094)ES(0.877)DET(0.971)PPAAPQLIK ; 76.049 0.00093379 4406600 3206.26 2677.99 2358.68 2815.84 2777.39 2642.84 2407.77 2619.09 2676.06 3603.5 TRUE FALSE FALSE 2830.427063 2760.495698 2486.197375 2930.682126 2572.507473 2592.43223 2500.638495 2917.236619 2565.751674 3582.066222 0.790166035 0.770643402 0.694067955 0.818154089 0.718163014 0.723725378 0.69809946 0.814400527 0.716277008 1 11.80657629 -8.887017743 0.489806922 1.033836655 0.736444013 0 0.096947309 0.33967644 0.136826484 0.047522748 0.011496604 1.30E-09 8.887017743 -0.297392642 SFLVASVLPGPDGNINS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 2 SFLVASVLPGPDGNINSPTR 20 0 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 SFLVASVLPGPDGNINS(0.857)PT(0.143)R;SFLVASVLPGPDGNINS(0.973)PT(0.027)R ; 204.94 2.77E-18 25768000 2936.8 2522.27 2336.59 2295.45 2816.5 2762.8 2255.04 2569.17 3189.3 2900 TRUE FALSE FALSE 2592.552756 2599.978149 2462.913123 2389.068373 2608.732406 2710.104193 2342.017648 2861.633928 3057.835704 2882.750671 0.899332982 0.901908783 0.854362172 0.828746099 0.904945555 0.940110506 0.81242463 0.992674794 1.060735406 1 11.49323035 -8.885047512 0.679554547 1.002766504 0.886709057 0.48942084 0.05398475 0.548810188 0.461897661 0.034430466 0.010440883 1.30E-09 8.885047512 -0.116057447 QSHSES(ph)PSLQSK ddPTM_HeLa_CUDC101_4h_R1 3 QSHSESPSLQSK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QSHS(0.005)ES(0.977)PS(0.017)LQSK;QSHSES(0.667)PS(0.333)LQSK;QSHSES(0.999)PS(0.001)LQSK ;; 271.41 2.73E-85 432781600 14368.8 11561.4 12494.2 11840.7 13347.9 12551.5 12622.3 11589.1 12356.4 13688.1 TRUE FALSE FALSE 12684.51105 11917.59303 13169.67424 12323.61493 12363.25201 12312.10105 13109.14634 12908.3563 11847.06396 13606.68257 0.932226572 0.875863236 0.967882816 0.905703125 0.908616185 0.904856932 0.963434421 0.948677698 0.870679822 1 13.73202775 -8.884650361 0.788039781 0.999192531 0.925244436 0 0.048099532 0.395039859 0.463269267 0.01653116 0.005702334 1.30E-09 8.884650361 -0.073948095 AAHTEDINACT(ph)LTTSPR ddPTM_HeLa_CUDC101_4h_R1 1 AAHTEDINACTLTTSPR 17 0 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 AAHTEDINACT(0.25)LT(0.25)T(0.25)S(0.25)PR 108.13 0.0017652 39445000 2271.3 2243.3 2126.6 2179.4 1991.8 1877.7 2134.8 1336.1 2387.8 1529.8 TRUE FALSE FALSE 2005.061657 2312.413414 2241.570429 2268.285352 1844.868882 1841.886001 2217.139951 1488.196223 2289.373873 1520.700682 1.318511711 1.520623645 1.474037893 1.491605402 1.213170287 1.211208769 1.457972616 0.978625341 1.505473037 1 10.5705205 -8.883287682 0.895258763 1.014053989 1.341397696 0 0.220395312 0.429175987 0.665338864 0.081994191 0.031598933 1.31E-09 8.883287682 0.327343708 ERQDNPK(ac)LDSMR ddPTM_HeLa_CUDC101_4h_R1 4 ERQDNPKLDSMR 12 2 Q6IN85-4;Q6IN85-2;Q6IN85;G3V5Z3 Q6IN85-4 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A 0 1 ;;; ERQDNPK(1)LDSMR;ERQDNPK(1)LDSMR;ERQDNPK(1)LDSMR;ERQDNPK(1)LDSMR 150.51 0.00017533 7351600 1680.04 1483.96 1550.91 1445.78 1398.041 1349.4 1833.54 1915.23 1859.35 1168.699 FALSE TRUE FALSE 1483.108258 1529.679049 1634.756886 1504.745158 1294.910301 1323.662443 1904.260252 2133.252042 1782.706806 1161.747526 1.276618391 1.316705234 1.407153318 1.295242833 1.114622817 1.139371863 1.639134329 1.836244101 1.534504499 1 10.18208086 -1 0.601517572 1.160375999 47.53262431 0.431892443 0.182885123 76.09136741 0.539629451 0.029891881 4653.731693 0.1 1 46.37224831 ERQEAEEAKEALLQASR ddPTM_HeLa_CUDC101_4h_R1 1 ERQEAEEAKEALLQASR 17 2 P26038 P26038 MSN Moesin 0 0 67.648 0.014026 11828000 1466.9 1503.3 1405.9 1462.8 2208.1 2069 1706.7 2036.4 1385.9 1277.4 FALSE FALSE TRUE 1294.952206 1549.614891 1481.907207 1522.459307 2045.212862 2029.537272 1772.527991 2268.215545 1328.772615 1269.801968 1.019806425 1.220359497 1.167038045 1.198973813 1.610654979 1.59831007 1.395908996 1.786275027 1.046440822 1 10.3103878 -6.022913791 0.721229707 1.003536689 1.652335786 0.817101436 0.112987676 0.198880525 0.194399481 0.021160679 0.065124348 9.49E-07 6.022913791 0.648799097 LNGPGENVS(ph)EDEAQSSNQR ddPTM_HeLa_CUDC101_4h_R1 4 LNGPGENVSEDEAQSSNQR 19 0 A0A3B3ISF0;Q659C4-2;Q659C4;G3V0E9;H0Y9K3;D6R9W6;A0A3B3IT29;A0A3B3ISF8;D6RJB0;Q659C4-3;Q659C4-9 A0A3B3ISF0 LARP1B La-related protein 1B 1 0 LNGPGENVS(0.944)EDEAQS(0.015)S(0.041)NQR;LNGPGENVS(1)EDEAQSSNQR;LNGPGENVS(1)EDEAQSSNQR;LNGPGENVS(1)EDEAQSSNQR ;;; 273.43 1.38E-86 55504000 4669.63 4101.23 3951.97 3588.02 4193.37 3870.58 3511.08 3902.5 5081.16 4793.03 TRUE FALSE FALSE 4122.26305 4227.584035 4165.625452 3734.354964 3884.033449 3796.755135 3646.503532 4346.744826 4871.712434 4764.520844 0.865199919 0.887305182 0.874301024 0.783783949 0.815199172 0.79688079 0.765345278 0.912315208 1.022497874 1 12.21811542 -8.8823002 0.329087506 1.051012459 0.806267886 0.735824689 0.042685229 1.015836862 0.181638033 0.094659788 0.022413209 1.31E-09 8.8823002 -0.244744574 ERRVASWAVSFERLLQDPV ddPTM_HeLa_CUDC101_4h_R1 1 ERRVASWAVSFERLLQDPV 19 3 A0A2R8YCJ1 A0A2R8YCJ1 0 0 40.962 0.034486 3993100 2809.8 2923.2 2184.3 2678.3 6898.9 8181.4 8997.9 3416.5 5725.5 2727.7 FALSE FALSE TRUE 2480.439503 3013.260327 2302.389865 2787.532651 6389.981892 8025.353426 9344.952017 3805.42055 5489.492467 2711.475519 0.91479325 1.111299109 0.84912803 1.02805009 2.356643771 2.959773514 3.446445285 1.403450086 2.024540671 1 11.40486243 -5.714092638 3.833650415 0.961607597 2.682559667 0.559629104 0.589424319 0.078023455 2.371200203 0.06468502 0.131297359 1.93E-06 5.714092638 1.72095207 EVSPDPSTTGAAS(ph)PASSSAGGSAAR ddPTM_HeLa_CUDC101_4h_R1 1 EVSPDPSTTGAASPASSSAGGSAAR 25 0 P23769-2;P23769 P23769-2 GATA2 Endothelial transcription factor GATA-2 1 0 EVSPDPS(0.003)T(0.019)T(0.028)GAAS(0.95)PASSSAGGSAAR 153.41 7.58E-11 4957000 2133.2 1631.7 1666.8 1805.3 1590.9 1699.7 1852.9 1580.8 1808.1 2710.5 TRUE FALSE FALSE 1883.14953 1681.970743 1756.91225 1878.927937 1473.542477 1667.281054 1924.366974 1760.751882 1733.569353 2694.377825 0.698918137 0.624251999 0.652066029 0.697351321 0.546895266 0.618800021 0.714215711 0.653491083 0.643402472 1 11.39573645 -8.881688194 0.556428241 1.03101039 0.636953296 0 0.117952837 0.237008495 0.12715251 0.046605962 0.012178432 1.31E-09 8.881688194 -0.394057094 SS(ph)LAELMAR ddPTM_HeLa_CUDC101_4h_R1 1 SSLAELMAR 9 0 Q9ULE0 Q9ULE0 WWC3 Protein WWC3 1 0 S(0.224)S(0.776)LAELMAR 115.23 0.0011549 0 1731.4 1557.7 1355.9 1338.8 1625.8 1599.5 1381.5 1535.7 1668.2 1668.7 TRUE FALSE FALSE 1528.447917 1605.690891 1429.204055 1393.402051 1505.867973 1568.992202 1434.784918 1710.51788 1599.43609 1658.774498 0.921432008 0.967998298 0.86160238 0.840018973 0.907819583 0.945874321 0.864966829 1.031193741 0.964227562 1 10.69590206 -8.879777932 0.628731601 1.003620967 0.911315471 0.174170143 0.054201879 0.877174698 0.62063459 0.042485964 0.012159997 1.32E-09 8.879777932 -0.092305496 NVFEVGPGDSPT(ph)FPR ddPTM_HeLa_CUDC101_4h_R1 2 NVFEVGPGDSPTFPR 15 0 Q16584;Q16584-2 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 0 NVFEVGPGDS(0.394)PT(0.606)FPR;NVFEVGPGDS(0.374)PT(0.626)FPR ; 195.17 1.69E-15 23145600 4788.8 4120.3 4177.6 4110.4 4505.1 4734.6 4019.7 3596.1 4403.3 3861.7 TRUE FALSE FALSE 4227.464123 4247.241559 4403.453693 4278.039879 4172.767748 4644.295393 4174.741176 4005.465488 4221.79411 3838.730437 1.101266211 1.106418288 1.147111985 1.114441337 1.087017653 1.209851921 1.087531736 1.043434947 1.099789157 1 11.90641354 -8.879313314 0.621210896 0.994183918 1.117357427 0.073025919 0.051001783 0.532037322 0.36640272 0.034223374 0.009708124 1.32E-09 8.879313314 0.123173508 VTTEIQLPS(ph)QSPVEEQSPASLSSLR ddPTM_HeLa_CUDC101_4h_R1 1 VTTEIQLPSQSPVEEQSPASLSSLR 25 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 E9PMS6 LMO7 LIM domain only protein 7 1 0 VT(0.014)T(0.014)EIQLPS(0.671)QS(0.265)PVEEQS(0.029)PAS(0.004)LS(0.001)S(0.001)LR 47.331 0.031443 37793000 1422.1 1147.1 1128.5 1125.5 1347.4 1178.7 1274.8 1001 1459.1 1578.4 TRUE FALSE FALSE 1255.403594 1182.440791 1189.510124 1171.402755 1248.004986 1156.218261 1323.969463 1114.949794 1398.95528 1569.011607 0.800123841 0.753621443 0.758127039 0.746586418 0.795408384 0.736908673 0.843823881 0.710606467 0.891615635 1 10.61564031 -8.877425916 0.589263385 1.015840787 0.762802129 0.676479237 0.047222671 0.232100358 0.141985624 0.030014697 0.008199622 1.33E-09 8.877425916 -0.253038658 ERSPALK(ac)SPLQSVVVR ddPTM_HeLa_CUDC101_4h_R1 2 ERSPALKSPLQSVVVR 16 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 1 ; ERSPALK(1)SPLQSVVVR;ERSPALK(1)SPLQSVVVR 125.61 0.010856 1716760 1266.33 874.34 1028.73 1042.94 966.04 898.07 896.36 1298.6 1013.87 813.94 FALSE TRUE FALSE 1117.892717 901.2773791 1084.346256 1085.475601 894.7771538 880.940811 930.9329055 1446.427375 972.0778495 809.0986487 1.381651939 1.113927678 1.340190417 1.341586224 1.105893769 1.088792834 1.150580225 1.787702127 1.20143304 1 9.660171803 -9.455172522 1.109966194 0.995132545 1.279950448 0.086785466 0.20562045 0.63267708 1.35531169 0.143560195 0.033177708 3.51E-10 9.455172522 0.284817903 GSDIDNPTLTVMDIS(ph)PPSR ddPTM_HeLa_CUDC101_4h_R1 1 GSDIDNPTLTVMDISPPSR 19 0 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 GSDIDNPTLTVMDIS(0.999)PPS(0.001)R 123.41 5.20E-05 9017200 434.48 341.37 322.47 401.54 474.33 233.12 449.96 360.13 526.54 443.46 TRUE FALSE FALSE 383.550913 351.8872051 339.9037036 417.9165368 439.3396209 228.6736244 467.3151079 401.1257435 504.8357983 440.8222802 0.870080598 0.79825186 0.771067432 0.948038599 0.996636605 0.518743346 1.060098659 0.909948888 1.14521389 1 8.784053333 -8.877313253 0.832391109 0.996400479 0.858118143 0.210392983 0.148877264 0.954523202 1.265255981 0.075568668 0.027547916 1.33E-09 8.877313253 -0.138282335 EHYPVSSPS(ph)S(ph)PSPPAQPGGVSR ddPTM_HeLa_CUDC101_4h_R1 2 EHYPVSSPSSPSPPAQPGGVSR 22 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 2 0 EHYPVS(0.003)S(0.009)PS(0.726)S(0.763)PS(0.498)PPAQPGGVSR;EHY(0.001)PVS(0.018)S(0.07)PS(0.845)S(0.71)PS(0.356)PPAQPGGVS(0.001)R ; 70.295 0.010706 79266000 3960.7 3155.8 3495.9 3024 3442.3 3546.2 3297.8 3415.9 3654.2 4105.6 TRUE FALSE FALSE 3496.43275 3253.026457 3684.898929 3147.331791 3188.368387 3478.562143 3424.997251 3804.752248 3503.572329 4081.179709 0.856721095 0.797079935 0.902900434 0.771181868 0.78123695 0.852342311 0.839217456 0.932267756 0.858470486 1 11.99477052 -8.877227505 0.664625159 1.005087276 0.835928854 0.08640052 0.064268462 0.400753171 0.321808569 0.036288176 0.010895872 1.33E-09 8.877227505 -0.169158422 TVS(ph)EPNLK ddPTM_HeLa_CUDC101_4h_R1 1 TVSEPNLK 8 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;F8VWY3;C9JEB6;H0YI41;C9JAH2;C9JF80 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 T(0.126)VS(0.874)EPNLK 102.06 0.016955 21595000 2762.1 2229.6 2445.5 2361.8 2413.2 2411.6 2248.6 2373.2 2637.8 2616.2 TRUE FALSE FALSE 2438.330825 2298.291333 2577.711127 2458.124413 2235.183044 2365.602748 2335.329255 2643.355495 2529.068768 2600.638726 0.937589216 0.883741102 0.991183859 0.945200265 0.859474644 0.909623749 0.897982958 1.016425491 0.972479854 1 11.34465028 -8.876454466 0.59611405 1.00486676 0.925393922 0.180132088 0.045694365 0.960312761 0.603273719 0.039182266 0.010806919 1.33E-09 8.876454466 -0.079472838 GLFQDEDS(ph)CSDCSYR ddPTM_HeLa_CUDC101_4h_R1 2 GLFQDEDSCSDCSYR 15 0 Q8NEM2 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 1 0 GLFQDEDS(0.771)CS(0.229)DCS(0.001)YR;GLFQDEDS(0.928)CS(0.072)DCSYR ; 137.17 0.00051092 35543000 2545.1 2146.78 1971.34 2148.03 2888.8 3114 2419.2 1984.74 2222.25 120.07 TRUE FALSE FALSE 2246.767236 2212.919747 2077.916603 2235.635948 2675.698979 3054.605638 2512.509354 2210.674779 2130.647914 119.3558183 18.82411154 18.54052679 17.40942866 18.73085016 22.41783448 25.59243179 21.05058128 18.52171776 17.85122791 1 6.899125086 -8.875065094 0.549096219 9.96E-16 21.14706841 0.245291646 5.338448677 0.223093685 0.116563677 2.338113465 0.610348275 1.33E-09 8.875065094 21.14706841 S(ph)GSSSSSSGTPASQLYPQSR ddPTM_HeLa_CUDC101_4h_R1 1 SGSSSSSSGTPASQLYPQSR 20 0 O15066-2;O15066 O15066-2 KIF3B "Kinesin-like protein KIF3B;Kinesin-like protein KIF3B, N-terminally processed" 1 0 S(0.999)GS(0.001)SSSSSGTPASQLYPQSR 172.5 6.46E-08 5883100 726.63 534.75 570.07 522.02 721.57 598.1 576.81 528.62 861.42 942.4 TRUE FALSE FALSE 641.4555329 551.2250137 600.8897086 543.310232 668.3412187 586.692239 599.0577549 588.795964 825.911903 936.7945629 0.684734475 0.588416111 0.641431678 0.57996732 0.713434135 0.626276307 0.639476123 0.62852197 0.881636098 1 9.871588892 -8.874374978 0.609037777 1.021035292 0.628404948 0.849428381 0.050276556 0.166564058 0.109936279 0.033853216 0.009510733 1.34E-09 8.874374978 -0.392630344 GTGQS(ph)DDSDIWDDTALIK ddPTM_HeLa_CUDC101_4h_R1 3 GTGQSDDSDIWDDTALIK 18 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 0 GT(0.048)GQS(0.519)DDS(0.433)DIWDDTALIK;GT(0.05)GQS(0.796)DDS(0.154)DIWDDTALIK;GT(0.001)GQS(0.5)DDS(0.5)DIWDDTALIK ;; 208.28 6.07E-24 183890000 8631.72 8545.09 6454.02 6545.86 7827.99 8175.38 7090.48 7038.6 7954.46 8454.05 TRUE FALSE FALSE 7619.922866 8808.354094 6802.943844 6812.828464 7250.534773 8019.448248 7363.962189 7839.845773 7626.573792 8403.764935 0.906727274 1.048143798 0.809511439 0.810687652 0.862772201 0.954268511 0.876269416 0.932896843 0.907518696 1 13.03682009 -8.869262288 0.420286707 1.017392996 0.887128187 0.048311794 0.071024718 1.806086841 0.528973244 0.102279505 0.024083783 1.35E-09 8.869262288 -0.130264809 EQGLTLPLYQS(ph)PVKELDKFK ddPTM_HeLa_CUDC101_4h_R1 1 EQGLTLPLYQSPVKELDKFK 20 2 P51587 P51587 BRCA2 Breast cancer type 2 susceptibility protein 1 0 EQGLT(0.001)LPLY(0.055)QS(0.943)PVKELDKFK 44.089 0.037384 11182000 922.01 591.12 743.67 629.72 883.26 669.18 804.5 472.1 1033.3 1356 TRUE FALSE FALSE 813.9333855 609.3317066 783.8750497 655.4027035 818.1036695 656.4165064 835.5298345 525.8419557 990.7069366 1347.934452 0.603837512 0.45204847 0.581537959 0.486227429 0.606931345 0.486979545 0.619859396 0.390109441 0.734981538 1 10.39653463 -8.868162042 0.549966263 1.042823748 0.514253124 0.584507936 0.106022081 0.250603958 0.131859469 0.06562567 0.01728347 1.35E-09 8.868162042 -0.528570624 LNCSTS(ph)PEIFRK ddPTM_HeLa_CUDC101_4h_R1 1 LNCSTSPEIFRK 12 1 Q9BRS8 Q9BRS8 LARP6 La-related protein 6 1 0 LNCS(0.001)T(0.088)S(0.911)PEIFRK 93.228 0.035355 13341000 2295.2 1973.1 2522.1 2019.8 2438.6 2029.2 2012.4 1895.8 1907.6 1025.1 TRUE FALSE FALSE 2026.160135 2033.888872 2658.452355 2102.176174 2258.709336 1990.496391 2090.018942 2111.610209 1828.967921 1019.00266 1.988375709 1.995960318 2.608876758 2.062974178 2.216588264 1.953377032 2.051043658 2.072232284 1.794860792 1 9.992942102 -8.867119268 0.629017241 0.94963082 2.148297356 0.403675775 0.295801563 0.239629543 0.170670667 0.150328862 0.043657803 1.36E-09 8.867119268 1.198666536 SCMLTGTPES(ph)VQSAK ddPTM_HeLa_CUDC101_4h_R1 1 SCMLTGTPESVQSAK 15 0 Q96AE4;E9PEB5;Q96AE4-2;C9JSZ1 Q96AE4 FUBP1 Far upstream element-binding protein 1 1 0 SCMLT(0.155)GT(0.322)PES(0.524)VQSAK 177.39 2.41E-07 22823000 2475.5 2320 2252.3 2319 2310.4 2142.9 2264.6 2094 2389 1467 TRUE FALSE FALSE 2185.325643 2391.47645 2374.066151 2413.578844 2139.966395 2102.027753 2351.946381 2332.372496 2290.524409 1458.274219 1.498569758 1.639936042 1.627997067 1.655092583 1.467465013 1.441448889 1.61282861 1.599405973 1.570708979 1 10.51004632 -8.866968916 0.652147514 0.979737653 1.577670363 0 0.187114799 0.199844754 0.154418271 0.063374423 0.018949454 1.36E-09 8.866968916 0.59793271 NWTEDMEGGISS(ph)PVKK ddPTM_HeLa_CUDC101_4h_R1 4 NWTEDMEGGISSPVKK 16 1 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 0 NWTEDMEGGIS(0.053)S(0.947)PVKK;NWTEDMEGGIS(0.012)S(0.988)PVKK;NWTEDMEGGIS(0.019)S(0.981)PVKK;NWTEDMEGGIS(0.149)S(0.851)PVKK ;;; 160.04 0.00013003 1570474000 16926 14167.7 13994.4 13850 15199.8 13654.6 14172.4 13486.9 15784.5 17356.1 TRUE FALSE FALSE 14941.95994 14604.19004 14750.97959 14414.86286 14078.54104 13394.16126 14719.03422 15022.19418 15133.85623 17252.86515 0.866056728 0.846479116 0.854987242 0.83550545 0.816011771 0.776344169 0.853135644 0.870707216 0.877179303 1 14.07454835 -8.866482622 0.452846914 1.026017043 0.826286807 0.333584671 0.044588657 0.378587692 0.130074938 0.03415336 0.008208766 1.36E-09 8.866482622 -0.199730236 MNRGINDSKDLPEEY(ph)LS(ph)AIYNEIAGKK ddPTM_HeLa_CUDC101_4h_R1 1 MNRGINDSKDLPEEYLSAIYNEIAGKK 27 3 E5RIF2;Q9Y6D6 E5RIF2 ARFGEF1 Brefeldin A-inhibited guanine nucleotide-exchange protein 1 2 0 MNRGINDS(0.003)KDLPEEY(0.924)LS(0.928)AIY(0.144)NEIAGKK 42.454 0.027569 29501000 7736.2 7481.6 6317 6796.4 7197 7556.6 6402.5 6476.1 6045 5459.7 TRUE FALSE FALSE 6829.374363 7712.099228 6658.516128 7073.586569 6666.091648 7412.470445 6649.44657 7213.313047 5795.822541 5427.225462 1.258354644 1.421002183 1.226872953 1.30335226 1.22826879 1.365793719 1.22520183 1.329097731 1.067916301 1 12.40599913 -8.86558582 0.692945902 0.994194433 1.296853147 0.717674562 0.064760562 0.258780604 0.229312371 0.04239858 0.013355786 1.36E-09 8.86558582 0.302658714 TDLQGSASPS(ph)KVEGVHTPR ddPTM_HeLa_CUDC101_4h_R1 1 TDLQGSASPSKVEGVHTPR 19 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 T(0.001)DLQGS(0.063)AS(0.146)PS(0.787)KVEGVHT(0.003)PR 62.781 0.0154 12955000 1157.9 905.19 816.95 758.34 1307.4 1008.2 999.29 994.66 1119.8 1341.8 TRUE FALSE FALSE 1022.172717 933.077831 861.1167881 789.268383 1210.955707 988.9702648 1037.83295 1107.888074 1073.64137 1333.818914 0.766350444 0.699553606 0.645602472 0.591735786 0.907886141 0.74145767 0.778091343 0.830613558 0.804937881 1 10.3813471 -8.865391278 0.793558169 0.995584765 0.742182296 0.194516836 0.102123485 0.36595282 0.438301475 0.052233806 0.018501146 1.36E-09 8.865391278 -0.253402469 ESLS(ph)PGKLK ddPTM_HeLa_CUDC101_4h_R1 1 ESLSPGKLK 9 1 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5 E7ETM8 NEXN Nexilin 1 0 ES(0.017)LS(0.983)PGKLK 128.01 0.0011215 0 1760.7 1351.2 1588.5 1540.1 1726.7 1198.3 1578.2 1569.6 1722 1670 TRUE FALSE FALSE 1554.313415 1392.82887 1674.379115 1602.911935 1599.324781 1175.444424 1639.071703 1748.276919 1651.018431 1660.066766 0.936295724 0.839019791 1.00862155 0.965570764 0.963409915 0.708070572 0.98735288 1.05313651 0.994549415 1 10.69702555 -8.865290821 0.841756426 0.99807872 0.929375978 0.070404066 0.092084018 1.277052618 1.739856085 0.05014664 0.01868693 1.36E-09 8.865290821 -0.068702742 LYSLLGIDLTAPS(ph)NNSS(ph)PRDSPCKENK ddPTM_HeLa_CUDC101_4h_R1 1 LYSLLGIDLTAPSNNSSPRDSPCKENK 27 2 A3KN83-4;A3KN83-3;A3KN83-2;A3KN83 A3KN83-4 SBNO1 Protein strawberry notch homolog 1 2 0 LYSLLGIDLT(0.002)APS(0.545)NNS(0.545)S(0.824)PRDS(0.085)PCKENK 73.153 8.34E-05 14775000 2403.8 2163.5 2202.4 2138.9 2491.2 2459.1 1938.3 1251.3 2348.4 1808.4 TRUE FALSE FALSE 2122.030208 2230.154871 2321.468406 2226.133587 2307.429139 2412.196765 2013.06088 1393.742934 2251.597958 1797.643556 1.180451041 1.24059904 1.291395281 1.238362065 1.283585464 1.341865998 1.119833169 0.775316624 1.252527482 1 10.81189127 -8.864944595 0.848173839 1.00646036 1.196298851 0 0.168186934 0.760140718 1.052912882 0.082614543 0.030996211 1.36E-09 8.864944595 0.189838491 NNS(ph)NTCNIENELEDSRK ddPTM_HeLa_CUDC101_4h_R1 2 NNSNTCNIENELEDSRK 17 1 Q6PL18;A0A0B4J211 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 0 NNS(0.993)NT(0.007)CNIENELEDSRK;NNS(0.96)NT(0.04)CNIENELEDSRK ; 147.67 7.58E-05 47599000 1956.82 1963.49 2124.57 2042.2 1821.72 1730.42 1442.31 1176.71 1914.98 933.37 TRUE FALSE FALSE 1727.444526 2023.9828 2239.430681 2125.489743 1687.335345 1697.415122 1497.94038 1310.66191 1836.043714 927.8182737 1.86183499 2.181443131 2.413652268 2.290847037 1.818605424 1.82946938 1.614476048 1.412627825 1.978882897 1 9.857698451 -8.864512148 0.842140495 1.029108995 1.940701789 0 0.409972236 0.343128307 0.468031399 0.178747157 0.066688458 1.37E-09 8.864512148 0.911592794 SAAPSSPGS(ph)PRPALPATPPATPPAASPSALK ddPTM_HeLa_CUDC101_4h_R1 1 SAAPSSPGSPRPALPATPPATPPAASPSALK 31 1 Q9H211;H3BSY1 Q9H211 CDT1 DNA replication factor Cdt1 1 0 S(0.001)AAPS(0.034)S(0.079)PGS(0.33)PRPALPAT(0.248)PPAT(0.28)PPAAS(0.023)PS(0.006)ALK 76.415 7.76E-06 14375000 2241.5 1816.6 1884.8 1574.8 1699.5 1445.6 1237.1 273.56 2272.9 2524 TRUE FALSE FALSE 1978.754768 1872.567293 1986.697989 1639.027151 1574.131271 1418.027589 1284.815361 304.7009646 2179.2101 2508.987136 0.788666765 0.746343919 0.791832673 0.653262477 0.627397107 0.565179298 0.512085273 0.121443813 0.868561687 1 11.29288936 -4.88088974 0.299871152 0.964769438 4.89E-25 0.852129477 0.087852727 1.461715489 0.129467411 0.044576001 0.495124395 1.32E-05 4.88088974 -0.964769438 down KGPPTQELDRDS(ph)EEEEEEDDEDGEDEEEVPK ddPTM_HeLa_CUDC101_4h_R1 1 KGPPTQELDRDSEEEEEEDDEDGEDEEEVPK 31 2 Q14687-3;Q14687;Q14687-2;H0Y613;H7C3B5 Q14687-3 GSE1 Genetic suppressor element 1 1 0 KGPPT(0.008)QELDRDS(0.992)EEEEEEDDEDGEDEEEVPK 41.916 0.021063 7232800 3146.3 2525.4 2559.5 2671.9 2764.4 2765.7 2630.9 2997.1 2857.7 3016.2 TRUE FALSE FALSE 2777.495483 2603.204581 2697.874312 2780.871631 2560.475719 2712.94888 2732.374694 3338.277749 2739.904396 2998.259508 0.926369274 0.868238581 0.899813477 0.92749531 0.853987359 0.90484125 0.91132028 1.113405207 0.913831638 1 11.54990954 -8.864082207 0.912603311 0.99621184 0.920493833 0 0.07198613 0.73885717 1.198210206 0.032539958 0.012986206 1.37E-09 8.864082207 -0.075718007 LTSS(ph)CPDLPSQTDKK ddPTM_HeLa_CUDC101_4h_R1 1 LTSSCPDLPSQTDKK 15 1 P56962 P56962 STX17 Syntaxin-17 1 0 LT(0.067)S(0.216)S(0.717)CPDLPSQTDKK 62.916 0.031213 18367000 2424.9 2204.9 2417 2049.7 2480.9 1839.3 2134.5 2422.8 2297.6 1411.4 TRUE FALSE FALSE 2140.656898 2272.830356 2547.670331 2133.295626 2297.88895 1804.218417 2216.82838 2698.601759 2202.891956 1403.00493 1.52576577 1.619973178 1.815866984 1.52051898 1.637833838 1.285967268 1.580057441 1.923444245 1.570124173 1 10.45430436 -8.864075534 0.619678745 0.969400646 1.618905449 0.063638262 0.236570721 0.40344274 0.278187033 0.136273186 0.039249331 1.37E-09 8.864075534 0.649504804 SDEGQLS(ph)PATR ddPTM_HeLa_CUDC101_4h_R1 4 SDEGQLSPATR 11 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 SDEGQLS(0.759)PAT(0.241)R;SDEGQLS(0.999)PAT(0.001)R;SDEGQLS(0.874)PAT(0.126)R;SDEGQLS(0.995)PAT(0.005)R ;;; 143.31 0.0012355 650199000 9643.2 8551.5 8006.9 8346.8 8377.7 8201.9 8214.5 8134.7 8370 9007.4 TRUE FALSE FALSE 8512.838714 8814.961579 8439.777234 8687.218582 7759.693762 8045.462423 8531.336017 9060.721366 8024.985057 8953.823584 0.950748988 0.984491318 0.94258918 0.970224452 0.866634649 0.898550474 0.952814843 1.011938786 0.896263477 1 13.12828818 -8.863635821 0.396885014 1.010871016 0.938077065 0 0.050135983 2.182666215 0.569694714 0.067011145 0.015784341 1.37E-09 8.863635821 -0.072793951 IVPQSQVPNPES(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 2 IVPQSQVPNPESPGK 15 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 IVPQSQVPNPES(1)PGK;IVPQSQVPNPES(1)PGK ; 219.03 2.26E-32 53419000 5852 5257.2 5115.6 4771.9 4282.2 5253.7 4739.9 4718.1 6102.5 5971.3 TRUE FALSE FALSE 5166.037431 5419.168101 5392.16481 4966.518708 3966.310637 5153.494426 4922.719531 5255.189433 5850.952367 5935.782442 0.870321222 0.912966092 0.908416854 0.836708346 0.668203506 0.868208105 0.829329508 0.885340641 0.985708695 1 12.5352225 -8.861142969 0.31693329 1.048681902 0.815716307 0.491497111 0.062536422 1.832333471 0.309390524 0.159398913 0.039053774 1.38E-09 8.861142969 -0.232965595 QEPIES(ph)DEEEAEPPREVEPGQR ddPTM_HeLa_CUDC101_4h_R1 2 QEPIESDEEEAEPPREVEPGQR 22 1 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 1 0 QEPIES(1)DEEEAEPPREVEPGQR;QEPIES(1)DEEEAEPPREVEPGQR ; 82.479 0.00047885 117964000 2420.06 2309.23 2051.88 2043.62 2203.06 1907.92 2012.46 2249.55 2264.1 1968.97 TRUE FALSE FALSE 2136.384235 2380.374639 2162.810839 2126.967657 2040.544653 1871.529605 2090.081256 2505.629679 2170.77284 1957.258479 1.091518703 1.216177968 1.105020549 1.086707596 1.042552466 0.956199513 1.067861644 1.280173113 1.109088484 1 10.93461858 -8.860171453 0.973953155 1.005917358 1.098503621 0 0.090527087 0.734533703 1.36810462 0.040015443 0.016876213 1.38E-09 8.860171453 0.092586264 TAENATSGET(ph)LEENEAGD ddPTM_HeLa_CUDC101_4h_R1 1 TAENATSGETLEENEAGD 18 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 1 0 TAENATSGET(1)LEENEAGD 135.57 0.00035603 4320700 1530.4 1161.5 1218.2 987.99 1435.3 1171.4 1510.9 1499.7 1121.6 1746.9 TRUE FALSE FALSE 1351.008832 1197.284438 1284.059577 1028.284503 1329.420779 1149.057497 1569.175919 1670.419786 1075.367173 1736.509361 0.77800262 0.689477676 0.739448693 0.592156038 0.765570753 0.661705328 0.903638042 0.961941135 0.619269436 1 10.76197447 -8.859218875 0.80558041 0.994696837 0.755081217 0 0.154839308 0.460008692 0.570408796 0.062193848 0.022461314 1.38E-09 8.859218875 -0.23961562 EDLESS(ph)GLQR ddPTM_HeLa_CUDC101_4h_R1 1 EDLESSGLQR 10 0 Q9UK76-3;Q9UK76;J3KSH8;J3KT51;Q9UK76-2 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 EDLES(0.082)S(0.918)GLQR 136.49 0.0016196 9869500 2654.2 1834.4 2599.9 2253.5 2128.8 2322.2 2477.8 1974.9 2421.1 2717.1 TRUE FALSE FALSE 2343.0787 1890.91569 2740.458458 2345.40747 1971.762665 2277.907904 2573.369576 2199.714633 2321.301233 2700.938568 0.867505365 0.700095779 1.01463191 0.868367573 0.730028698 0.843376421 0.952768644 0.814426014 0.85944244 1 11.39924511 -8.859168788 0.771555655 0.998842032 0.850109796 0.022529314 0.097273622 0.631924557 0.712757448 0.052437028 0.018245742 1.38E-09 8.859168788 -0.148732237 LLHMDS(ph)DDEIPIR ddPTM_HeLa_CUDC101_4h_R1 6 LLHMDSDDEIPIR 13 0 Q1MSJ5-2;Q1MSJ5-1;Q1MSJ5 Q1MSJ5-2 CSPP1 Centrosome and spindle pole-associated protein 1 1 0 LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR ;;;;; 166.52 8.72E-06 29973800 11165.28 10450.9 9407.26 9454.41 11267.15 9632.79 9059 8778.44 9663.56 9075.72 TRUE FALSE FALSE 9856.502804 10772.87984 9915.844931 9840.001705 10435.99479 9449.06058 9408.408665 9777.742126 9265.223967 9021.737214 1.092528254 1.194102598 1.099105937 1.090699216 1.156761114 1.047365974 1.042859977 1.083798153 1.026988899 1 13.13918955 -8.859027155 0.934000394 1.005239319 1.100119527 0.382052921 0.043838564 0.398665085 0.679820341 0.022061586 0.009014469 1.38E-09 8.859027155 0.094880207 SSS(ph)ENDVELLTK ddPTM_HeLa_CUDC101_4h_R1 1 SSSENDVELLTK 12 0 Q9C0D6 Q9C0D6 FHDC1 FH2 domain-containing protein 1 1 0 S(0.002)S(0.04)S(0.958)ENDVELLTK 134.02 0.0014367 6134500 1681.5 1474.6 1627 1231 1739.9 1639.7 1257.9 1408.5 1756.1 1276.4 TRUE FALSE FALSE 1484.397119 1520.030678 1714.960541 1281.205501 1611.551043 1608.425454 1306.417624 1568.837947 1683.712815 1268.807916 1.169914768 1.19799905 1.351631338 1.009771049 1.270130035 1.26766663 1.029641767 1.236466077 1.327003712 1 10.30925796 -8.858951614 0.730097276 0.999458831 1.191759758 0 0.141461145 0.587322467 0.586234412 0.062027732 0.020580842 1.38E-09 8.858951614 0.192300927 T(ph)GKPMINLY(ph)T(ph)DK ddPTM_HeLa_CUDC101_4h_R1 1 TGKPMINLYTDK 12 1 Q92804-2;Q92804;A0A075B7D9 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 3 0 T(1)GKPMINLY(1)T(1)DK 43.37 0.034492 13797000 3841.6 3970.1 3848.6 3650 4020.6 3872.7 3622.6 3896.6 4052.9 792.13 TRUE FALSE FALSE 3391.293471 4092.414075 4056.666957 3798.862777 3724.008348 3798.8347 3762.324895 4340.173193 3885.837747 787.4183755 4.306850814 5.197254982 5.151857111 4.824452787 4.729389692 4.824417131 4.778050668 5.511902349 4.934908642 1 9.62098657 -8.858554704 0.54968353 0.652442738 5.057231018 0 1.235908659 0.144011801 0.076051751 0.313746822 0.083507212 1.38E-09 8.858554704 4.404788281 EQDGFTGKEEVVEQGELNATEEVWIPGEGHPES(ph)PEPK ddPTM_HeLa_CUDC101_4h_R1 2 EQDGFTGKEEVVEQGELNATEEVWIPGEGHPESPEPK 37 1 P48681 P48681 NES Nestin 1 0 EQDGFTGKEEVVEQGELNATEEVWIPGEGHPES(1)PEPK;EQDGFTGKEEVVEQGELNAT(0.015)EEVWIPGEGHPES(0.985)PEPK ; 155.15 9.46E-25 42368000 6183.7 5212.9 5095.3 4681.8 6226.1 5307.8 4645 5408.7 5268.3 6245.7 TRUE FALSE FALSE 5458.85606 5373.50327 5370.76733 4872.74404 5766.813007 5206.562558 4824.159206 6024.404545 5051.138444 6208.550299 0.879248101 0.865500481 0.865059808 0.784844095 0.928850171 0.838611642 0.777018623 0.970339976 0.81357776 1 12.60004072 -8.856994992 0.567148421 1.010609436 0.854765628 0 0.07948889 0.613999176 0.348035136 0.047954271 0.013051642 1.39E-09 8.856994992 -0.155843808 ESADPLGAWLQDAR ddPTM_HeLa_CUDC101_4h_R1 2 ESADPLGAWLQDAR 14 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 203.61 2.59E-16 12198300 3493.2 2911.2 3036.8 3217 3608.1 3334.9 2810.6 3012.6 3481.1 3544.7 FALSE FALSE TRUE 3083.732391 3000.890621 3200.978594 3348.203165 3341.937651 3271.292339 2919.005783 3355.542207 3337.607585 3523.615967 0.875161317 0.851650875 0.908435716 0.950217957 0.948439808 0.928390713 0.828412009 0.952300772 0.947210938 1 11.78284098 -9.368067263 1.098011945 0.999869238 0.902798173 0.254886556 0.04330713 0.38411192 0.830316691 0.028394311 0.00739128 4.28E-10 9.368067263 -0.097071065 PDPAGHLT(ph)LRDNRLK ddPTM_HeLa_CUDC101_4h_R1 1 PDPAGHLTLRDNRLK 15 2 Q9NTJ4-3;Q9NTJ4-2;Q9NTJ4;Q9NTJ4-4 Q9NTJ4-3 MAN2C1 Alpha-mannosidase 2C1 1 0 PDPAGHLT(1)LRDNRLK 94.122 0.0073516 26886000 12663 12750 11208 12286 12567 11872 11493 10615 12023 5667.2 TRUE FALSE FALSE 11178.66234 13142.81239 11813.93838 12787.07618 11639.95745 11645.56138 11936.28886 11823.36869 11527.40685 5633.491242 1.984322307 2.332978223 2.097090041 2.269831555 2.066206717 2.06720147 2.118808452 2.098764014 2.046227882 1 12.45981357 -8.85630924 0.635476955 0.952790947 2.155503949 0.107221937 0.331054885 0.140386896 0.102795893 0.088490715 0.026222424 1.39E-09 8.85630924 1.202713002 ESASSSSSVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 ESASSSSSVKK 11 1 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 0 1 ; ESASSSSSVK(1)K;ESASSSSSVK(1)K 275.28 4.69E-63 8226100 3191.4 2416.1 3795.5 3552.8 2627.6 2761.2 3098.5 1716.81 3832.6 5136 FALSE TRUE FALSE 2817.30893 2490.537177 4000.696211 3697.698541 2433.767183 2708.53471 3218.010183 1912.244711 3674.618606 5105.450844 0.55182373 0.487819245 0.783612718 0.72426484 0.476699758 0.530518223 0.630308719 0.374549627 0.719744195 1 12.31782265 -9.426579174 0.562831076 1.101054748 0.56506326 0.318669446 0.14353269 0.706971822 0.286214251 0.206806627 0.027381804 3.74E-10 9.426579174 -0.535991488 SLPS(ph)HMEEAPNVFQLYQRPTSASR ddPTM_HeLa_CUDC101_4h_R1 1 SLPSHMEEAPNVFQLYQRPTSASR 24 1 Q5THJ4-2;Q5THJ4;H3BLS7 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 S(0.137)LPS(0.863)HMEEAPNVFQLYQRPTSASR 49.528 0.019436 11309000 581.21 522.33 369.81 566.2 450.11 410.58 524 548.46 509.52 639.93 TRUE FALSE FALSE 513.0814449 538.4223682 389.8030472 589.2920833 416.906282 402.7488706 544.2108555 610.8944694 488.5173699 636.1236679 0.806574996 0.846411469 0.61277872 0.926379748 0.655385585 0.633129831 0.855511095 0.960339161 0.767959745 1 9.313163455 -8.854862788 0.62179767 1.009699541 0.77515137 0 0.133835149 0.752856905 0.525263652 0.091770007 0.026776206 1.40E-09 8.854862788 -0.234548171 YNDWS(ph)DDDDDSNESK ddPTM_HeLa_CUDC101_4h_R1 2 YNDWSDDDDDSNESK 15 0 Q9UH62;H3BV87 Q9UH62 ARMCX3 Armadillo repeat-containing X-linked protein 3 1 0 YNDWS(0.906)DDDDDS(0.094)NESK;YNDWS(0.948)DDDDDS(0.051)NESK ; 171.33 6.68E-07 478110000 4869.3 4202.5 4131.5 4440.1 4602.9 4520.6 3926.2 4215.8 4671.2 3907.4 TRUE FALSE FALSE 4298.528035 4331.974044 4354.861387 4621.18647 4263.353237 4434.377087 4077.634849 4695.709631 4478.651159 3884.158611 1.106681901 1.115292777 1.121185261 1.189752256 1.097625938 1.141657056 1.049811621 1.208938692 1.153055683 1 11.9233864 -8.85392096 0.507108838 0.985470903 1.133479136 0 0.063115221 0.612108688 0.270901145 0.043184935 0.011030321 1.40E-09 8.85392096 0.148008233 RGEGDAPFSEPGTT(ph)STQRPS(ph)SPETATK ddPTM_HeLa_CUDC101_4h_R1 1 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RGEGDAPFS(0.006)EPGT(0.1)T(0.409)S(0.409)T(0.236)QRPS(0.534)S(0.224)PET(0.068)AT(0.012)K 57.648 0.005527 10304000 2900.5 2069.6 2510.5 2405.3 2222.5 2319.9 2307.5 2504 2692 3515.2 TRUE FALSE FALSE 2560.507787 2133.361923 2646.225224 2503.398531 2058.550603 2275.651773 2396.501048 2789.045238 2581.034621 3494.291434 0.732768813 0.61052776 0.757299519 0.716425226 0.589118178 0.651248419 0.685833192 0.798171902 0.738643204 1 11.77078422 -8.852612962 0.602130294 1.018011199 0.680375733 0.174597405 0.099851435 0.307213959 0.199598998 0.053220734 0.015191224 1.40E-09 8.852612962 -0.337635466 NYDPYKPLDIT(ph)PPPDQK ddPTM_HeLa_CUDC101_4h_R1 1 NYDPYKPLDITPPPDQK 17 1 Q9UKK3 Q9UKK3 PARP4 Poly [ADP-ribose] polymerase 4 1 0 NY(0.002)DPY(0.022)KPLDIT(0.975)PPPDQK 84.859 0.011241 20198000 3249.1 2548.7 2640.6 2804.5 2730.4 2419.7 2646.9 2825.5 3018.6 3651.4 TRUE FALSE FALSE 2868.245423 2627.222426 2783.358823 2918.879632 2528.983832 2373.548254 2748.99182 3147.143499 2894.17203 3629.68131 0.79021963 0.723816281 0.766832839 0.804169673 0.696750931 0.653927453 0.757364513 0.867057802 0.797362573 1 11.82562717 -8.852524126 0.559615326 1.019956863 0.744249057 0.174973204 0.082903135 0.400492463 0.220796284 0.054984288 0.014906778 1.40E-09 8.852524126 -0.275707806 NKQDDDLNCEPLS(ph)PHNITPEPVSK ddPTM_HeLa_CUDC101_4h_R1 1 NKQDDDLNCEPLSPHNITPEPVSK 24 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4;A8MV73;F8WE35;F5H8I0;F5H2W9;F5H2H9;F5GZ10;F5H502;F5H1K9 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 NKQDDDLNCEPLS(1)PHNITPEPVSK 98.973 7.01E-06 141720000 2149.4 1801.6 1969.7 2081.6 2041.7 1651.1 1933.1 1869.4 2300.5 1570.4 TRUE FALSE FALSE 1897.45059 1857.105161 2076.18794 2166.496645 1891.087859 1619.608018 2007.660315 2082.20494 2205.672416 1561.059191 1.215489202 1.189644295 1.329986686 1.387837603 1.211413295 1.037505834 1.286088526 1.33384112 1.412933237 1 10.60830953 -8.852391462 0.599080424 0.986120287 1.25434925 0 0.156927945 0.612203349 0.393279512 0.084083068 0.023916053 1.40E-09 8.852391462 0.268228963 APES(ph)PPSADPALVAGPAEEAECPPPR ddPTM_HeLa_CUDC101_4h_R1 4 APESPPSADPALVAGPAEEAECPPPR 26 0 Q6EEV4-2;Q6EEV4 Q6EEV4-2 POLR2M "DNA-directed RNA polymerase II subunit GRINL1A, isoforms 4/5" 1 0 APES(0.987)PPS(0.013)ADPALVAGPAEEAECPPPR;APES(0.976)PPS(0.024)ADPALVAGPAEEAECPPPR;APES(0.976)PPS(0.024)ADPALVAGPAEEAECPPPR;APES(0.987)PPS(0.013)ADPALVAGPAEEAECPPPR ;;; 176 7.95E-14 31200000 5341.63 4338.88 4480.22 4389.05 3970.99 4848.79 4186.5 3676.95 5130.98 5566.66 TRUE FALSE FALSE 4715.492229 4472.55575 4722.434245 4568.05443 3678.057979 4756.307409 4347.974707 4095.519125 4919.478833 5533.549259 0.852164137 0.808261667 0.853418669 0.825519791 0.664683336 0.859540087 0.7857479 0.740125177 0.889027747 1 12.43398942 -8.851989304 0.276684717 1.082832476 0.752432256 0.482639187 0.061078628 1.332238258 0.177788503 0.152775928 0.040137059 1.41E-09 8.851989304 -0.33040022 ESDVPLKTEEFEVTK ddPTM_HeLa_CUDC101_4h_R1 1 ESDVPLKTEEFEVTK 15 1 M0QXF7;M0QYN0;Q969H8 M0QXF7 MYDGF Myeloid-derived growth factor 0 0 74.853 0.037581 8114000 1789.2 1409.7 1271.2 1492.9 1729 1470.5 1331.4 1938.2 1305.3 1507.3 FALSE FALSE TRUE 1579.472688 1453.131186 1339.924917 1553.786915 1601.455115 1442.452663 1382.752544 2158.836854 1251.494982 1498.334513 1.054152244 0.969830952 0.894276215 1.037009361 1.068823484 0.962704023 0.922859703 1.440824352 0.835257395 1 10.54914404 -4.254523407 24.99461139 1.00789826 1.440824552 0.755768844 0.077588143 242.5420668 876535.0236 0.008083942 0.108425874 5.57E-05 4.254523407 0.432926292 ESEAVEWQQK ddPTM_HeLa_CUDC101_4h_R1 1 ESEAVEWQQK 10 0 P26038 P26038 MSN Moesin 0 0 121.83 0.024331 15822000 1481.9 1454.8 998.51 1478.2 1336.4 1446.6 1100.3 1342.1 1275.4 1642.4 FALSE FALSE TRUE 1308.193928 1499.620664 1052.492471 1538.487385 1237.816434 1419.008515 1142.73894 1494.879239 1222.827472 1632.630932 0.801279642 0.918530107 0.644660376 0.942336296 0.758172843 0.869154496 0.699937088 0.915625945 0.748991979 1 10.67298298 -9.305111953 0.648182919 1.025774695 0.812011849 0 0.12116406 0.830568931 0.508004171 0.103439239 0.01786077 4.95E-10 9.305111953 -0.213762847 ESEDAELLWR ddPTM_HeLa_CUDC101_4h_R1 1 ESEDAELLWR 10 0 E5RGC8;H0YB83;E5RH53;Q96DB5-3;Q96DB5-2;Q96DB5 E5RGC8 RMDN1 Regulator of microtubule dynamics protein 1 0 0 143.7 0.0050367 4251400 3115.9 3192.8 2999.9 2508.2 3145.9 2784.6 2707.6 2327.7 3673.1 4995 FALSE FALSE TRUE 2750.658925 3291.166384 3162.083668 2610.495237 2913.833225 2731.488394 2812.033039 2592.675959 3521.693263 4965.289518 0.553977551 0.662834739 0.636837723 0.525748847 0.586840549 0.550116642 0.566338182 0.522160077 0.709262421 1 12.27766213 -9.509520764 0.505723796 1.1330502 0.5605521 0.459060351 0.099999473 0.328947046 0.098807751 0.096738908 0.010906831 3.09E-10 9.509520764 -0.5724981 NQYVEEQVS(ph)QR ddPTM_HeLa_CUDC101_4h_R1 1 NQYVEEQVSQR 11 0 Q5H9I0 Q5H9I0 TFDP3 Transcription factor Dp family member 3 1 0 NQYVEEQVS(1)QR 73.841 0.033558 37212000 4917.1 4380.9 4622.4 4658.3 5217.9 4892.9 4488.4 3963.6 4413.7 2488.9 TRUE FALSE FALSE 4340.724992 4515.870336 4872.300926 4848.285609 4832.985913 4799.576085 4661.519092 4414.800203 4231.765418 2474.095912 1.754469166 1.825260821 1.969325806 1.959619102 1.953435147 1.939931294 1.884130307 1.784409481 1.710429008 1 11.27268571 -8.849681639 0.5302152 0.913160929 1.93107882 0.332754244 0.223783226 0.144852674 0.07090701 0.071687473 0.01885353 1.41E-09 8.849681639 1.017917891 DT(ph)DIT(ph)S(ph)ESDY(ph)GNRKECNRK ddPTM_HeLa_CUDC101_4h_R1 1 DTDITSESDYGNRKECNRK 19 3 Q9C099-2;Q9C099 Q9C099-2 LRRCC1 Leucine-rich repeat and coiled-coil domain-containing protein 1 4 0 DT(0.75)DIT(0.75)S(0.75)ES(0.75)DY(0.998)GNRKECNRK 41.871 0.038339 63698000 4351.6 4128.9 4524.2 4438.5 4466.8 4075.9 4597.5 4297.9 4079.7 316.8 TRUE FALSE FALSE 3841.512045 4256.106515 4768.791937 4619.521215 4137.293063 3998.158998 4774.827115 4787.155563 3911.533039 314.9156595 12.19854246 13.51506788 15.14307654 14.66907432 13.1377813 12.69596756 15.16224097 15.20138938 12.42089087 1 8.298821689 -8.849255756 0.548996357 4.82E-17 14.50398019 0.213388878 3.546494822 0.138377803 0.073210891 0.990751604 0.266273677 1.41E-09 8.849255756 14.50398019 LLRDDEAHLQEDQGEEECFHDCSAS(ph)FEEEPGADKVENK ddPTM_HeLa_CUDC101_4h_R1 1 LLRDDEAHLQEDQGEEECFHDCSASFEEEPGADKVENK 38 2 Q99614 Q99614 TTC1 Tetratricopeptide repeat protein 1 1 0 LLRDDEAHLQEDQGEEECFHDCS(0.309)AS(0.691)FEEEPGADKVENK 61.438 8.01E-05 14859000 1908.7 1903.6 1859.6 1904.5 2446.1 2121.2 1738.3 2035.1 2038.2 288.36 TRUE FALSE FALSE 1684.965079 1962.24766 1960.135601 1982.173742 2265.656076 2080.741644 1805.346813 2266.767558 1954.184533 286.6448219 5.878233098 6.845571627 6.838203419 6.915086513 7.904053739 7.258954236 6.298201382 7.907931296 6.817442298 1 8.163120407 -8.848541986 0.455428648 0.065201221 7.406564891 0.037375049 1.849516848 0.18225066 0.064021 0.605350107 0.148722759 1.42E-09 8.848541986 7.34136367 TLETQPLAPDCCPSDQDPAPAHPS(ph)PHAS(ph)PMNK ddPTM_HeLa_CUDC101_4h_R1 1 TLETQPLAPDCCPSDQDPAPAHPSPHASPMNK 32 0 E9PMR3;E9PMG4;Q9BUR4 E9PMR3 WRAP53 Telomerase Cajal body protein 1 2 0 TLETQPLAPDCCPS(0.353)DQDPAPAHPS(0.828)PHAS(0.819)PMNK 71.556 6.75E-06 22568000 2517.5 2172.8 2552 2606.8 3145.6 2634.7 2552.1 2062.8 2927.6 551.31 TRUE FALSE FALSE 2222.402466 2239.741393 2689.968839 2713.116572 2913.555355 2584.447487 2650.535352 2297.620814 2806.923089 548.0307836 4.055251152 4.086889751 4.908426533 4.950664548 5.316408206 4.715880138 4.836471657 4.1925032 5.121834709 1 9.098113123 -8.847553026 0.474148148 0.496091791 4.905947594 0 1.309860493 0.20397687 0.078199078 0.415053509 0.103565193 1.42E-09 8.847553026 4.409855802 EPVICT(ph)PVSSGFEK ddPTM_HeLa_CUDC101_4h_R1 1 EPVICTPVSSGFEK 14 0 Q8TEQ6 Q8TEQ6 GEMIN5 Gem-associated protein 5 1 0 EPVICT(0.901)PVS(0.096)S(0.003)GFEK 133.48 0.00017865 0 1127.7 1131.7 1068.1 972.05 1197.4 1225.9 999.72 512.17 1158.2 611.44 TRUE FALSE FALSE 995.5127155 1166.566336 1125.844717 1011.694401 1109.070188 1202.518 1038.279535 570.4733625 1110.458506 607.8031277 1.637886793 1.919316112 1.852318071 1.664510027 1.824719448 1.978466291 1.708249741 0.938582473 1.827003606 1 9.247460289 -8.844569119 0.772044841 1.009380641 1.716964069 0 0.371277284 0.419837803 0.476305608 0.164976217 0.058325917 1.43E-09 8.844569119 0.707583428 VSQSALNPHQS(ph)PDFKR ddPTM_HeLa_CUDC101_4h_R1 2 VSQSALNPHQSPDFKR 16 1 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 VSQSALNPHQS(1)PDFKR;VSQSALNPHQS(1)PDFKR ; 86.959 0.0057734 84100000 6358.6 5027.7 5040.7 5335.5 6395.9 5854.9 5121.6 4833.3 6316.7 6458.2 TRUE FALSE FALSE 5613.254547 5182.597478 5313.215489 5553.104752 5924.087199 5743.227537 5319.141828 5383.503335 6056.322952 6419.786339 0.874367814 0.807285041 0.827631203 0.864998375 0.922785726 0.894613502 0.828554339 0.83857983 0.943383881 1 12.64830957 -8.844348051 0.754339571 0.99909851 0.85739001 0.595629087 0.036590722 0.294088232 0.317075124 0.022998379 0.007972043 1.43E-09 8.844348051 -0.141708499 SEPVINNDNPLESNDEKEGQEAT(ph)CSRPQIVPEPMDFR ddPTM_HeLa_CUDC101_4h_R1 1 SEPVINNDNPLESNDEKEGQEATCSRPQIVPEPMDFR 37 2 P23497;P23497-2;P23497-3;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;H7C4B4 P23497 SP100 Nuclear autoantigen Sp-100 1 0 SEPVINNDNPLES(0.091)NDEKEGQEAT(0.454)CS(0.454)RPQIVPEPMDFR 76.063 4.11E-07 32539000 1430 1207.7 1183 1050.8 1262.7 1295.8 1221.2 1305.5 1437.1 1424.4 TRUE FALSE FALSE 1262.377568 1244.907806 1246.956558 1093.656166 1169.553137 1271.084774 1268.302093 1454.112843 1377.86213 1415.927605 0.891555163 0.87921713 0.880664063 0.772395539 0.825997835 0.897704635 0.895739364 1.026968354 0.973116227 1 10.46753179 -8.842762477 0.734262748 0.999600763 0.877918697 0.305674908 0.061197224 0.604408454 0.61430682 0.040261032 0.01365914 1.44E-09 8.842762477 -0.121682066 EGPSCPS(ph)PGPFCR ddPTM_HeLa_CUDC101_4h_R1 2 EGPSCPSPGPFCR 13 0 Q4AC94 Q4AC94 C2CD3 C2 domain-containing protein 3 1 0 EGPS(0.008)CPS(0.992)PGPFCR;EGPS(0.286)CPS(0.714)PGPFCR ; 102.33 0.0080968 27247000 3028.3 2992.2 2984 2696.4 3209.1 2487.9 2951.2 2681.2 2691.7 1277.84 TRUE FALSE FALSE 2673.327265 3084.386135 3145.324066 2806.370847 2972.371086 2440.447453 3065.028773 2986.41697 2580.746987 1270.239351 2.104585457 2.42819287 2.476166452 2.209324443 2.340008664 1.921250079 2.412953724 2.351066331 2.031701336 1 10.31088465 -8.841201222 0.629082829 0.946193005 2.308948133 0.294787892 0.34815525 0.192428959 0.13863525 0.13646527 0.040795761 1.44E-09 8.841201222 1.362755128 ESEFDDEPK ddPTM_HeLa_CUDC101_4h_R1 1 ESEFDDEPK 9 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 0 175.51 9.00E-07 14025000 2590 2108.5 2560.2 2478.6 2388.5 2293.4 2739.7 2455.4 2774.5 2683.7 FALSE FALSE TRUE 2286.404126 2173.460386 2698.612156 2579.688021 2212.305114 2249.657216 2845.371147 2734.912811 2660.133936 2667.737233 0.857057471 0.814720565 1.01157345 0.966994796 0.829281492 0.84328291 1.066585986 1.025180733 0.997149908 1 11.38140086 -4.745430078 24.96445528 0.918699363 1.045883434 0.340480327 0.07271455 233.2445096 363708.7586 0.011085121 0.041206421 1.80E-05 4.745430078 0.127184071 ESEIIDFFLGASLKDEVLK ddPTM_HeLa_CUDC101_4h_R1 1 ESEIIDFFLGASLKDEVLK 19 1 E9PQD7;P15880;E9PPT0;E9PMM9;I3L404 E9PQD7 RPS2 40S ribosomal protein S2 0 0 97.904 0.0023127 9348700 407.71 705.99 472.73 502.57 554.01 563.63 651.98 501.47 553.19 648.07 FALSE FALSE TRUE 359.9188518 727.7407151 498.2872137 523.0669769 513.141786 552.8796968 677.127087 558.5553178 530.3872741 644.2152508 0.558693467 1.12965459 0.773479381 0.811944418 0.79653778 0.858221994 1.05108826 0.867032125 0.823307541 1 9.331399005 -4.956247279 8.087593868 0.814068996 0.958891951 0.068160429 0.147774471 0.47232265 76.05672358 0.025867404 0.077889196 1.11E-05 4.956247279 0.144822955 ESEITDEDIDGILER ddPTM_HeLa_CUDC101_4h_R1 4 ESEITDEDIDGILER 15 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 0 ;;; ;;; 362.14 6.07E-245 89602200 9516.9 8740 8547.77 8257.6 9371.1 9751.7 9162.5 8580.3 8943.2 10914.3 FALSE FALSE TRUE 8401.343409 9009.269041 9009.888302 8594.38062 8679.812623 9565.70257 9515.900694 9557.046669 8574.557511 10849.38126 0.774361524 0.830394732 0.83045181 0.792153987 0.800028353 0.881681853 0.877091556 0.880884028 0.790326868 1 13.40532515 -9.407902453 1.099419824 1.001328636 0.828874073 0 0.073305927 0.222713168 0.475593573 0.029818092 0.007333905 3.91E-10 9.407902453 -0.172454563 ASTAPGAEAS(ph)PSPCITER ddPTM_HeLa_CUDC101_4h_R1 2 ASTAPGAEASPSPCITER 18 0 Q66PJ3 Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 0 ASTAPGAEAS(0.828)PS(0.172)PCITER;ASTAPGAEAS(0.991)PS(0.009)PCITER ; 217.4 3.13E-33 5769500 3106.1 2940.1 3010.5 2714.8 2912 2971.1 3087.5 2674.6 3323.5 1679.84 TRUE FALSE FALSE 2742.007667 3030.680996 3173.256736 2825.521278 2697.187562 2914.431218 3206.585909 2979.065653 3186.503923 1669.848237 1.642069983 1.814943975 1.900326428 1.692082679 1.615229158 1.745327002 1.920285831 1.784033774 1.908259597 1 10.70550127 -8.841046884 0.54857191 0.93360126 1.795744318 0 0.29397481 0.235007956 0.124626793 0.099859682 0.027074385 1.44E-09 8.841046884 0.862143058 ESELTDEDITTILER ddPTM_HeLa_CUDC101_4h_R1 2 ESELTDEDITTILER 15 0 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 A0A0A0MRP6 SMARCA1 Probable global transcription activator SNF2L1 0 0 ; ; 243.4 8.52E-55 6562700 1638.81 1372.74 1330.3 1538.77 1297.75 1561.76 1353.96 1424.74 1433.77 1136.4 FALSE FALSE TRUE 1446.711176 1415.032492 1402.220042 1601.527692 1202.017568 1531.97203 1406.182691 1586.926643 1374.669394 1129.640642 1.280682654 1.252639503 1.241297444 1.417732004 1.064070752 1.35615874 1.244805328 1.404806611 1.216908583 1 10.14164818 -9.357530756 0.519038049 0.931612905 1.288957902 0.165649231 0.116454356 0.870300373 0.304617598 0.159351007 0.022262921 4.39E-10 9.357530756 0.357344997 AEFTS(ph)PPSLFK ddPTM_HeLa_CUDC101_4h_R1 1 AEFTSPPSLFK 11 0 A0A0B4J203;Q6UN15-4;Q6UN15;Q6UN15-5;Q6UN15-3 A0A0B4J203;Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 AEFT(0.092)S(0.868)PPS(0.04)LFK 95.018 0.0025679 0 2839.9 2525.9 2022.6 1648.1 2042.6 1903.2 1266.2 987.31 2713 2562.1 TRUE FALSE FALSE 2507.011227 2603.719985 2131.947874 1715.316642 1891.921467 1866.899631 1315.037758 1099.70138 2601.168992 2546.860515 0.984353565 1.022325318 0.837088589 0.673502389 0.742844556 0.733019975 0.51633678 0.431787046 1.021323695 1 11.31450423 -4.870290612 0.4134194 1.013658697 0.203960415 0.897964893 0.064949878 0.761739482 0.123558008 0.019501952 0.278830762 1.35E-05 4.870290612 -0.809698282 down Y(ph)EAAGT(ph)LVT(ph)LSSAPT(ph)AIK ddPTM_HeLa_CUDC101_4h_R1 1 YEAAGTLVTLSSAPTAIK 18 0 E9PP73;P53618 E9PP73 COPB1 Coatomer subunit beta 4 0 Y(0.985)EAAGT(0.954)LVT(0.956)LS(0.087)S(0.084)APT(0.936)AIK 44.299 0.0030964 0 203.1 143.3 40.49 106.68 192.72 184.56 189.74 237.67 229.87 355.99 TRUE FALSE FALSE 179.2929259 147.7149031 42.67901188 111.0308715 178.5034296 181.0398255 197.0583354 264.7253921 220.3946613 353.8725556 0.506659595 0.417424015 0.1206056 0.313759487 0.504428577 0.511596117 0.556862442 0.748081161 0.622808008 1 8.467086069 -8.840717813 0.788191023 0.989210005 0.449261545 0.287257254 0.189976397 0.331099361 0.393480891 0.099685692 0.036019207 1.44E-09 8.840717813 -0.539948459 SAS(ph)LSNLHSLDR ddPTM_HeLa_CUDC101_4h_R1 1 SASLSNLHSLDR 12 0 B0QY53;B0QY54;A0A087WUW0;Q9Y3M2 B0QY53 CBY1 Protein chibby homolog 1 1 0 S(0.244)AS(0.755)LS(0.001)NLHSLDR 95.755 0.0097174 11354000 3542.1 3249.5 2727.8 2863.5 3694.6 3150.3 2829.9 2950.9 2876.2 3123 TRUE FALSE FALSE 3126.900407 3349.613243 2875.273119 2980.285907 3422.056719 3090.213276 2939.050191 3286.818528 2757.641819 3104.424257 1.007240038 1.078980502 0.926185624 0.96001244 1.102316061 0.995422346 0.946729554 1.05875301 0.888294122 1 11.60011002 -8.840683656 1.424084957 1.000919279 1.007567902 0.008049997 0.064902522 4.167401903 16.86745707 0.017475403 0.009411815 1.44E-09 8.840683656 0.006648624 MVIQGPS(ph)SPQGEAMVTDVLEDQK ddPTM_HeLa_CUDC101_4h_R1 5 MVIQGPSSPQGEAMVTDVLEDQK 23 0 Q12888;Q12888-3;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 MVIQGPS(0.599)S(0.401)PQGEAMVTDVLEDQK;MVIQGPS(0.874)S(0.125)PQGEAMVT(0.001)DVLEDQK;MVIQGPS(0.627)S(0.373)PQGEAMVTDVLEDQK;MVIQGPS(0.647)S(0.353)PQGEAMVTDVLEDQK;MVIQGPS(0.61)S(0.39)PQGEAMVTDVLEDQK ;;;; 167.11 8.30E-09 49891300 24627.5 20760.1 19476.2 19457.6 18547.38 20496.4 17905 17392.02 22816.3 27936 TRUE FALSE FALSE 21740.70178 21399.69407 20529.14228 20251.16503 17179.17673 20105.46532 18595.60185 19371.85726 21875.80246 27769.83543 0.782889111 0.770609323 0.739260495 0.729250452 0.618627243 0.724003762 0.669633131 0.697586318 0.787754127 1 14.76123101 -8.839962266 0.303230252 1.099769646 0.659236966 0.437773438 0.072340837 0.47049362 0.074247375 0.075681095 0.019265875 1.45E-09 8.839962266 -0.44053268 ESESCDCLQGFQLTHSLGGGTGSGMGTLLISK ddPTM_HeLa_CUDC101_4h_R1 1 ESESCDCLQGFQLTHSLGGGTGSGMGTLLISK 32 0 Q9BVA1;Q13885 Q9BVA1 TUBB2B;TUBB2A Tubulin beta-2B chain;Tubulin beta-2A chain 0 0 103.42 2.02E-10 10537000 1435.1 875.61 1324.9 906.58 1727.4 1635.4 1316.9 1258.7 1012 830.24 FALSE FALSE TRUE 1266.879753 902.5865062 1396.528102 943.554251 1599.973143 1604.20747 1367.693274 1401.98532 970.2849317 825.3016956 1.535050467 1.093644313 1.692142533 1.143284033 1.938652437 1.943783078 1.657204004 1.698754925 1.175673014 1 9.688777794 -10.02334334 0.10297829 2.07E-16 2.210224399 0.493955553 0.239953479 25.16665706 0.502747448 9.277325404 2.813382637 9.48E-11 10.02334334 2.210224399 ESGLISTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 ESGLISTKK 9 1 Q9NWT1 Q9NWT1 PAK1IP1 p21-activated protein kinase-interacting protein 1 0 1 ; ESGLISTK(1)K;ESGLISTK(1)K 105.4 0.0064523 2984900 1291.74 1398.89 1552.05 1813.68 1676.2 2185.82 2011.27 2235.18 966.06 1471.66 FALSE TRUE FALSE 1140.324195 1441.988143 1635.958518 1887.64971 1552.550065 2144.129125 2088.845358 2489.623856 926.2385979 1462.906501 0.779492192 0.985700824 1.118293286 1.290342007 1.061277713 1.465663817 1.427873454 1.701833887 0.633149554 1 10.51462185 -5.130093217 0.552843612 0.896388369 1.80324657 0.799838142 0.138888664 0.575427605 0.2064762 0.027524128 0.281422578 7.41E-06 5.130093217 0.906858201 SMS(ph)APVIFDR ddPTM_HeLa_CUDC101_4h_R1 1 SMSAPVIFDR 10 0 D6RC15;O60749 D6RC15 SNX2 Sorting nexin-2 1 0 S(0.228)MS(0.772)APVIFDR 102.05 0.014032 10090000 2094.5 1774.7 1740.8 1426.2 1602.4 1868 1849 2170.6 1691.7 2189.3 TRUE FALSE FALSE 1848.985885 1829.376403 1834.912914 1484.366601 1484.194144 1832.371012 1920.316549 2417.69233 1621.96741 2176.277946 0.849609255 0.840598696 0.843142723 0.682066646 0.681987403 0.841974719 0.882385705 1.110929941 0.745294236 1 11.08764711 -8.839665039 0.737800445 0.99904591 0.83112185 0 0.136410614 0.807432097 0.830267173 0.074255694 0.025379856 1.45E-09 8.839665039 -0.16792406 DCS(ph)PTCWEQGK ddPTM_HeLa_CUDC101_4h_R1 1 DCSPTCWEQGK 11 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 DCS(0.992)PT(0.008)CWEQGK 165.35 4.59E-05 12939000 2642.4 2008 2921.4 2315.1 2954.6 2531.6 2065.6 2220.4 3388.8 1449 TRUE FALSE FALSE 2332.661878 2069.8641 3079.339721 2409.519785 2736.645044 2483.313948 2145.270884 2473.161361 3249.11223 1440.381284 1.619475277 1.437025129 2.137864297 1.672834695 1.89994488 1.724067076 1.48937709 1.717018535 2.255730664 1 10.49223504 -8.839583235 0.561647042 0.947911424 1.743648951 0 0.429444136 0.432543975 0.24192698 0.171296697 0.04723488 1.45E-09 8.839583235 0.795737527 AIGSVPERS(ph)PAGVDLSLTGLPPPVSR ddPTM_HeLa_CUDC101_4h_R1 1 AIGSVPERSPAGVDLSLTGLPPPVSR 26 1 Q9UPN4-3;Q9UPN4-2;I3L2J8;Q9UPN4 Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa 1 0 AIGS(0.006)VPERS(0.987)PAGVDLSLT(0.007)GLPPPVSR 94.838 3.11E-06 12498000 706.8 447.99 520.66 509.53 725 664.16 334.56 314.37 605.92 794.23 TRUE FALSE FALSE 623.9499754 461.7920409 548.8084545 530.3108358 671.5181944 651.4922546 347.4640913 350.1566101 580.9437211 789.5058846 0.790304401 0.584912728 0.695129023 0.671699662 0.850555021 0.825189865 0.440103232 0.443513616 0.735832034 1 9.624806209 -8.839103025 0.068737691 1.757390567 7.52E-14 0.25475476 0.145748165 30.14040002 0.678303299 10.60920969 6.742573952 1.45E-09 8.839103025 -1.757390567 MPQDGS(ph)DDEDEEWPTLEK ddPTM_HeLa_CUDC101_4h_R1 3 MPQDGSDDEDEEWPTLEK 18 0 F8WBL2;Q13895 F8WBL2 BYSL Bystin 1 0 MPQDGS(1)DDEDEEWPTLEK;MPQDGS(1)DDEDEEWPTLEK;MPQDGS(1)DDEDEEWPTLEK ;; 147.03 1.73E-05 73863000 29174.9 24950.4 24762.8 24284.4 28056.6 26985.9 24834.3 23123.9 26528.2 25583.3 TRUE FALSE FALSE 25755.06245 25719.09225 26101.55187 25274.8228 25986.92051 26471.18892 25792.16727 25756.23131 25434.69637 25431.12939 1.012737659 1.011323243 1.026362277 0.99385373 1.021854756 1.040897103 1.014196691 1.012783621 1.00014026 1 14.63430791 -8.839015791 0.231755238 0.991150169 1.022734151 0.286373785 0.011139345 4.890974627 0.492891718 0.048900519 0.014472465 1.45E-09 8.839015791 0.031583981 GTENTFPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 GTENTFPSPK 10 0 J3QSD2;J3QRZ1;A6NIZ0;Q9GZM8-3;Q9GZM8;Q9GZM8-2 J3QSD2 NDEL1 Nuclear distribution protein nudE-like 1 1 0 GTENT(0.151)FPS(0.849)PK;GTENT(0.004)FPS(0.996)PK ; 106.79 0.0095916 57499000 9924.9 8886.4 8251.8 8085.1 8900.4 7636.2 7482.2 6261.5 9312.2 10642 TRUE FALSE FALSE 8761.518267 9160.179451 8697.917268 8414.845325 8243.835224 7490.552208 7770.79096 6974.28385 8928.347175 10578.70091 0.828222514 0.865907783 0.82221034 0.795451672 0.779286161 0.708078645 0.734569493 0.659276022 0.843992778 1 13.36887485 -8.837571119 0.044289418 1.824449883 1.28E-14 0.668155967 0.051658019 20.63441477 0.294121521 6.951479864 5.170155847 1.45E-09 8.837571119 -1.824449883 APS(ph)PAPSSVPLGSEKPSNVSQDRK ddPTM_HeLa_CUDC101_4h_R1 1 APSPAPSSVPLGSEKPSNVSQDRK 24 2 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 APS(0.931)PAPS(0.037)S(0.029)VPLGS(0.003)EKPSNVSQDRK 46.971 0.022768 11684000 3434.9 2959.5 3001.1 2604.6 2941.6 2212 2732.2 3529.8 3015.4 3728.4 TRUE FALSE FALSE 3032.266229 3050.678687 3163.348544 2710.826846 2724.604028 2169.809785 2837.581869 3931.618164 2891.103936 3706.223311 0.818155296 0.82312328 0.85352346 0.731425664 0.735142974 0.585450364 0.765626254 1.060815238 0.780067388 1 11.8557341 -8.836610148 0.484508829 1.025984708 0.772952019 0 0.131515364 1.141065203 0.461213164 0.13448022 0.034277663 1.46E-09 8.836610148 -0.253032689 TEPS(ph)SPLSDPSDIIR ddPTM_HeLa_CUDC101_4h_R1 2 TEPSSPLSDPSDIIR 15 0 Q9ULJ3-2;Q9ULJ3 Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 TEPS(0.5)S(0.5)PLSDPSDIIR;TEPS(0.489)S(0.489)PLS(0.022)DPSDIIR ; 246.63 1.14E-55 33634400 5127.3 4261.1 3861.8 4144.1 4516.6 4295.2 4045.6 4005 5083.2 5819.3 TRUE FALSE FALSE 4526.285666 4392.37944 4070.580589 4313.11431 4183.419416 4213.276216 4201.640147 4460.913011 4873.668344 5784.686545 0.782459971 0.759311573 0.703682137 0.745608993 0.723188609 0.72834996 0.726338431 0.771158986 0.842512089 1 12.49802307 -8.836518549 0.51993004 1.02652825 0.727838135 0.620606384 0.051005565 0.148644297 0.070145014 0.021361577 0.005638942 1.46E-09 8.836518549 -0.298690115 ESIESEIRR ddPTM_HeLa_CUDC101_4h_R1 4 ESIESEIRR 9 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ;;; ;;; 221.94 1.68E-31 192925300 12612.5 11869.5 11642.3 11048.3 12851 11161.6 10713.2 12355.7 12365.7 11576.6 FALSE FALSE TRUE 11134.08187 12235.18523 12271.71795 11498.89743 11903.00733 10948.71108 11126.41171 13762.22294 11855.98061 11507.74187 0.967529685 1.063213389 1.06638801 0.999231436 1.034347787 0.95142133 0.966863164 1.195909945 1.030261258 1 13.49031714 -7.27154745 24.55670731 0.984666796 1.032706805 0.053398225 0.065858934 898.7012938 2183311.95 0.01055825 0.012154156 5.35E-08 7.27154745 0.048040009 ESIK(ac)LVSIDSK ddPTM_HeLa_CUDC101_4h_R1 1 ESIKLVSIDSK 11 1 P21333-2;P21333;Q60FE5;A0A087WWY3;F8WE98;O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;O75369-5;O75369-4 P21333-2;O75369-8 FLNA;FLNB Filamin-A;Filamin-B 0 1 ESIK(1)LVSIDSK 82.171 0.037278 434010 194.93 205.63 254.67 317.53 295.24 268.46 190.91 292.7 184.26 256.79 FALSE TRUE FALSE 172.0806009 211.9652166 268.4382305 330.4802459 273.4607334 263.3395728 198.2734627 326.0197849 176.6647248 255.2626017 0.674131658 0.830381008 1.051615978 1.294667702 1.071291805 1.031641812 0.776743093 1.277193693 0.692090121 1 7.995838375 -6.73548272 6.253297685 0.840477388 1.077685632 0.423888788 0.159757311 0.169114514 21.01454441 0.028205561 0.039379393 1.84E-07 6.73548272 0.237208244 S(ph)PQNQYPAELMR ddPTM_HeLa_CUDC101_4h_R1 2 SPQNQYPAELMR 12 0 P33993;P33993-2;C9J8M6 P33993 MCM7 DNA replication licensing factor MCM7 1 0 S(1)PQNQYPAELMR;S(1)PQNQYPAELMR ; 91.845 0.019089 17787300 839.56 720.05 687.6 624.46 770.37 847.25 535.53 682.55 914.69 834.21 TRUE FALSE FALSE 741.1480495 742.233887 724.7737359 649.9281779 713.5413399 831.0901179 556.1855715 760.248733 876.986091 829.2480818 0.893759136 0.895068561 0.874013159 0.783756022 0.860467881 1.002221333 0.670710712 0.916792875 1.057567826 1 9.69565996 -8.834581147 0.305585329 1.048779705 0.832295312 0.390702962 0.083246798 2.465888221 0.395857039 0.195823018 0.049961887 1.46E-09 8.834581147 -0.216484393 VPS(ph)PGMEEAGCSR ddPTM_HeLa_CUDC101_4h_R1 6 VPSPGMEEAGCSR 13 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 VPS(0.993)PGMEEAGCS(0.007)R;VPS(1)PGMEEAGCSR;VPS(0.99)PGMEEAGCS(0.01)R;VPS(1)PGMEEAGCSR;VPS(1)PGMEEAGCSR;VPS(1)PGMEEAGCSR ;;;;; 164.92 2.53E-05 565679300 2882.95 2728.29 2532.2 2769.85 2685.72 2511.44 2081.93 2546.34 2622.93 2090.29 TRUE FALSE FALSE 2545.014971 2812.345381 2669.098391 2882.816455 2487.599786 2463.538466 2162.230737 2836.205053 2514.811715 2077.856862 1.224826896 1.353483694 1.284543916 1.387398963 1.197194971 1.185615098 1.040606202 1.364966521 1.210291123 1 11.02088056 -8.834463176 0.832164872 1.007959895 1.250462854 0.123435408 0.115877461 0.401750724 0.538010693 0.054915862 0.020912626 1.46E-09 8.834463176 0.242502959 VRVS(ph)GQGLHEGHTFEPAEFIIDTR ddPTM_HeLa_CUDC101_4h_R1 1 VRVSGQGLHEGHTFEPAEFIIDTR 24 1 P21333-2;P21333;Q60FE5;H0Y5C6 P21333-2 FLNA Filamin-A 1 0 VRVS(0.995)GQGLHEGHT(0.005)FEPAEFIIDTR 57.768 0.0039196 11495000 989.4 948.72 819.94 931.69 1002.8 860.75 1200.2 661.82 880.02 635.57 TRUE FALSE FALSE 873.4240318 977.9489387 864.2684366 969.6883453 928.8254419 844.3326279 1246.492116 737.1589136 843.7452031 631.7896014 1.382460284 1.547902872 1.367968758 1.53482796 1.470149936 1.336414252 1.972954467 1.166779118 1.335484473 1 9.303300382 -8.833865063 0.421707704 0.9090616 1.526939959 0.168284131 0.222617943 0.977229743 0.294106701 0.262646399 0.064358375 1.47E-09 8.833865063 0.617878359 SLAPDRS(ph)DDEHDPLDNTSRPR ddPTM_HeLa_CUDC101_4h_R1 4 SLAPDRSDDEHDPLDNTSRPR 21 2 Q92614;A0A0D9SFK2;Q92614-2;Q92614-3;Q92614-4;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 S(0.093)LAPDRS(0.907)DDEHDPLDNTSRPR;S(0.067)LAPDRS(0.931)DDEHDPLDNT(0.001)S(0.001)RPR;S(0.16)LAPDRS(0.84)DDEHDPLDNTSRPR;S(0.081)LAPDRS(0.919)DDEHDPLDNTSRPR ;;; 93.342 0.00018916 377852900 10671.8 8067.3 8682 8251.2 10604.3 10173.8 9401.9 8787 10074.1 10280.8 TRUE FALSE FALSE 9420.867781 8315.843951 9151.375182 8587.719601 9822.041916 9979.751716 9764.534432 9787.276562 9658.841334 10219.64934 0.921838653 0.81371128 0.895468609 0.840314507 0.961093829 0.976525845 0.95546668 0.957692014 0.945124535 1 13.31905808 -8.832905223 1.027526453 0.993758958 0.91551826 0.131827031 0.053031571 0.514482634 1.075269338 0.023655364 0.010643603 1.47E-09 8.832905223 -0.078240698 S(ph)LKESEQES(ph)EEEILAQK ddPTM_HeLa_CUDC101_4h_R1 1 SLKESEQESEEEILAQK 17 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 S(0.818)LKES(0.183)EQES(1)EEEILAQK 74.703 0.021695 125710000 7114.1 5527.5 5586.9 5496.6 6032.4 6042.1 6302.6 7047.2 7127.6 7568 TRUE FALSE FALSE 6280.195982 5697.795723 5888.944713 5720.775106 5587.40187 5926.857009 6545.693393 7849.424762 6833.797311 7522.985199 0.834801055 0.757384944 0.782793606 0.7604395 0.742710735 0.787833134 0.870092552 1.043392291 0.908389041 1 12.87708954 -8.830260766 0.820693739 0.994501515 0.815559014 0.244686895 0.087091424 0.473091725 0.615501694 0.047494417 0.01795245 1.48E-09 8.830260766 -0.178942501 ESLQQMAEVTR ddPTM_HeLa_CUDC101_4h_R1 2 ESLQQMAEVTR 11 0 K7ELL7;P14314-2;P14314;K7EPW7;K7EKX1;K7EJ70 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 0 ; ; 180.09 2.92E-07 71562000 1469.47 1169.45 847.02 1029.95 1211.89 1238.59 920.82 1208.37 1295.92 1282.09 FALSE FALSE TRUE 1297.220954 1205.479368 892.8124633 1071.955813 1122.491289 1214.965959 956.3363359 1345.925956 1242.501629 1274.464072 1.017856041 0.945871598 0.700539531 0.841103203 0.880755538 0.953315191 0.750383127 1.056072106 0.974920876 1 10.31567499 -6.993920264 24.98055678 1.0070337 0.859103089 0.297766757 0.093072982 119.2397708 489931.4844 0.013795272 0.018102951 1.01E-07 6.993920264 -0.147930611 SCS(ph)PELQQK ddPTM_HeLa_CUDC101_4h_R1 3 SCSPELQQK 9 0 P16152 P16152 CBR1 Carbonyl reductase [NADPH] 1 1 0 S(0.004)CS(0.996)PELQQK;S(0.137)CS(0.863)PELQQK;S(0.458)CS(0.542)PELQQK ;; 136.49 0.0023347 39883900 7907.7 7093.8 6937 7606.3 7792.3 6525.6 7005.6 7028.4 7044.4 5369.7 TRUE FALSE FALSE 6980.771393 7312.35157 7312.035203 7916.517791 7217.477553 6401.135052 7275.808339 7828.484646 6754.02685 5337.760786 1.307808962 1.369928677 1.369869407 1.483115881 1.352154554 1.199217295 1.363082504 1.466623358 1.265329624 1 12.38201894 -8.828572763 0.583838438 0.977563141 1.373363449 0.335890806 0.108127492 0.341622589 0.209435836 0.068227954 0.019560949 1.48E-09 8.828572763 0.395800308 AAS(ph)PHQVTPQADEK ddPTM_HeLa_CUDC101_4h_R1 2 AASPHQVTPQADEK 14 0 Q96L73-2;Q96L73-3;Q96L73 Q96L73-2 NSD1 "Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific" 1 0 AAS(1)PHQVTPQADEK;AAS(1)PHQVTPQADEK ; 132.25 0.00049068 32097500 7297.5 5724.6 6207.3 5817 5605.5 6399.7 5731.5 5378.7 7498.1 8121.6 TRUE FALSE FALSE 6442.098112 5900.968141 6542.885414 6054.242403 5191.993433 6277.636385 5952.565875 5990.989467 7189.025144 8073.292362 0.797951793 0.730924619 0.810435832 0.749909966 0.643107322 0.777580707 0.737315782 0.742075128 0.890470061 1 12.97894142 -8.8285197 0.430820137 1.044208187 0.726298776 0.692501916 0.051584366 0.398589692 0.125834523 0.055705563 0.013788238 1.48E-09 8.8285197 -0.317909411 (ac)AEPPS(ph)PVHCVAAAAPTATVSEK ddPTM_HeLa_CUDC101_4h_R1 1 AEPPSPVHCVAAAAPTATVSEK 22 0 Q6PCB5 Q6PCB5 RSBN1L Round spermatid basic protein 1-like protein 1 0 AEPPS(1)PVHCVAAAAPTATVSEK 63.681 0.0034294 8027500 1189.2 1061.4 967.79 899.1 899.64 1120.1 1142.6 865.79 1234 1229.5 TRUE FALSE FALSE 1049.803779 1094.100476 1020.111655 935.7691842 833.2753495 1098.735959 1186.670465 964.348034 1183.133998 1222.186879 0.858955203 0.895199003 0.834660944 0.765651473 0.681790456 0.89899178 0.970940275 0.789034844 0.968046718 1 10.25524918 -8.825238354 0.54946678 1.012170263 0.830256034 0.386708318 0.075229495 0.852238322 0.457136723 0.07628003 0.02107337 1.50E-09 8.825238354 -0.181914229 SVFTSSLFQMEPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SVFTSSLFQMEPSPR 15 0 Q2M1Z3 Q2M1Z3 ARHGAP31 Rho GTPase-activating protein 31 1 0 SVFTSSLFQMEPS(1)PR 118.47 0.00097107 6894800 1558.1 1171.8 1144.7 1372.1 1199.5 1044.4 1057.4 1173.3 1109 1936.8 TRUE FALSE FALSE 1375.46188 1207.901769 1206.585945 1428.060169 1111.015275 1024.47981 1098.184272 1306.863729 1063.286551 1925.279827 0.7144218 0.627390238 0.626706792 0.741741615 0.577066907 0.532119952 0.57040242 0.678791577 0.552276368 1 10.91085243 -8.825085134 0.376287297 1.087665342 0.58629798 0 0.150121219 0.483196704 0.11581686 0.09934545 0.024402376 1.50E-09 8.825085134 -0.501367362 VSPSKS(ph)PSLSPSPPS(ph)PLEK ddPTM_HeLa_CUDC101_4h_R1 3 VSPSKSPSLSPSPPSPLEK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VS(0.227)PS(0.289)KS(0.449)PS(0.034)LS(0.008)PS(0.024)PPS(0.969)PLEK;VS(0.022)PS(0.328)KS(0.629)PS(0.013)LS(0.007)PS(0.002)PPS(0.998)PLEK;VS(0.076)PS(0.377)KS(0.446)PS(0.104)LS(0.284)PS(0.205)PPS(0.509)PLEK ;; 97.784 0.0020941 145589000 6980.2 5595.9 6109.9 6078.1 6699.2 5961.5 5548.2 5893 6054.4 6428.1 TRUE FALSE FALSE 6161.991537 5768.303046 6440.219675 6325.99119 6205.013363 5847.79432 5762.195933 6563.8353 5804.835069 6389.865375 0.964338241 0.902726851 1.007880338 0.990003829 0.971071063 0.915167062 0.901771101 1.027225914 0.908444033 1 12.64156982 -8.822436629 0.733539153 1.00011841 0.9577975 0 0.049637661 1.104015229 1.127197014 0.02541269 0.008801987 1.51E-09 8.822436629 -0.042320911 ESNPHCGSDGQTYGNK ddPTM_HeLa_CUDC101_4h_R1 2 ESNPHCGSDGQTYGNK 16 0 Q6UWN8 Q6UWN8 SPINK6 Serine protease inhibitor Kazal-type 6 0 0 ; ; 196.45 2.80E-16 6722000 4831.7 3241.4 2995.2 3589.8 4854.8 3643.3 4053.9 3708.2 5231.1 1704.73 FALSE FALSE TRUE 4265.33545 3341.263692 3157.129572 3736.20756 4496.671076 3573.810123 4210.260281 4130.326499 5015.471844 1694.59019 2.517030652 1.971723731 1.86306376 2.204785312 2.653544852 2.108952444 2.484530068 2.43736009 2.959696022 1 10.72672071 -9.396813476 0.76933401 0.859060145 2.294081305 0 0.655279901 0.305726374 0.270816072 0.287965058 0.050549241 4.01E-10 9.396813476 1.435021159 IFYPEIEEVQALDDT(ph)ERGSGGFGSTGKN ddPTM_HeLa_CUDC101_4h_R1 1 IFYPEIEEVQALDDTERGSGGFGSTGKN 28 2 H0YNW5;A0A0C4DGL3;P33316;P33316-2 H0YNW5;P33316;P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 IFYPEIEEVQALDDT(0.732)ERGS(0.178)GGFGS(0.04)T(0.05)GKN 74.819 0.00015098 43417000 1491.6 1323 1321.6 1167 1212.2 1247.1 1143.7 1608.3 1353.2 1399.2 TRUE FALSE FALSE 1316.756909 1363.760062 1393.049694 1214.595304 1122.778421 1223.313645 1187.812892 1791.382371 1297.420523 1390.877496 0.946709479 0.980503363 1.001561746 0.87325829 0.807244652 0.879526521 0.854002524 1.287951222 0.932807186 1 10.44177964 -8.822275726 0.572434685 1.002736924 0.939805319 0 0.127846907 3.500334042 2.059603044 0.110161879 0.031371178 1.51E-09 8.822275726 -0.062931605 TFNKDTVIIVS(ph)EPS(ph)EDEESQGLPTMAR ddPTM_HeLa_CUDC101_4h_R1 3 TFNKDTVIIVSEPSEDEESQGLPTMAR 27 1 D6RAY8;Q9H4L7;Q9H4L7-2 D6RAY8 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 TFNKDT(0.001)VIIVS(0.665)EPS(0.703)EDEES(0.416)QGLPT(0.216)MAR;T(0.002)FNKDT(0.002)VIIVS(0.97)EPS(0.989)EDEES(0.026)QGLPT(0.011)MAR;TFNKDTVIIVS(0.951)EPS(0.629)EDEES(0.364)QGLPT(0.056)MAR ;; 69.71 0.0002648 47016000 8237.5 6903.4 7754.7 7600.7 9380.7 7511.6 7265.6 6307.2 8312.3 5012.7 TRUE FALSE FALSE 7271.912737 7116.085571 8173.942539 7910.689399 8688.70445 7368.328745 7545.836626 7025.186153 7969.663476 4982.884237 1.459378222 1.428105738 1.64040386 1.587572382 1.743709875 1.478727659 1.51435118 1.409863408 1.599407712 1 12.28276534 -8.820878284 0.546303262 0.957215771 1.56277454 0 0.205579711 0.316240121 0.167827917 0.093932788 0.025982518 1.51E-09 8.820878284 0.605558769 DDGELGGNFLHSFQNDNYSPSMTMS(ph)V ddPTM_HeLa_CUDC101_4h_R1 2 DDGELGGNFLHSFQNDNYSPSMTMSV 26 0 Q9NW25;Q9BWW4-2;Q9BWW4-3;Q9BWW4 Q9NW25 SSBP3 Single-stranded DNA-binding protein 3 1 0 DDGELGGNFLHSFQNDNY(0.001)S(0.001)PS(0.076)MT(0.25)MS(0.672)V;DDGELGGNFLHS(0.015)FQNDNY(0.051)S(0.056)PS(0.281)MT(0.281)MS(0.315)V ; 63.536 0.0031363 3195700 1698.25 1475.51 1294.2 1165.3 1508.49 1524.89 1199.59 1198.22 1608.98 1949.7 TRUE FALSE FALSE 1499.183709 1520.968714 1364.168367 1212.825971 1397.211698 1495.805264 1245.858588 1334.620521 1542.657163 1938.103098 0.773531455 0.78477183 0.703867802 0.625779904 0.720917117 0.771788284 0.642823692 0.688622046 0.795962385 1 10.9204296 -8.820001802 0.37469148 1.067124276 0.677541646 0.43065634 0.075644101 0.486582491 0.115988684 0.077568586 0.019161763 1.51E-09 8.820001802 -0.38958263 TLLDIS(ph)GYRQQR ddPTM_HeLa_CUDC101_4h_R1 1 TLLDISGYRQQR 12 1 G3V2R1;Q9UPU9-2;Q9UPU9-3;Q9UPU9 G3V2R1 SAMD4A Protein Smaug homolog 1 1 0 TLLDIS(0.945)GY(0.055)RQQR 117.89 0.018849 11180000 1427.4 1267.7 1013.1 1009.6 1156.6 1287.9 1180.4 1006 1350.5 1743.7 TRUE FALSE FALSE 1260.082336 1306.756334 1067.87125 1050.775852 1071.279922 1263.335453 1225.928423 1120.518974 1294.831818 1733.328395 0.72697265 0.753900033 0.616081323 0.606218565 0.61804787 0.728849453 0.707268413 0.646455096 0.747020485 1 10.7593293 -8.8192931 0.504493591 1.034873584 0.656359242 0.337672284 0.089104663 0.302822579 0.134929793 0.05429675 0.014382062 1.52E-09 8.8192931 -0.378514342 SWEETPAAES(ph)PAGR ddPTM_HeLa_CUDC101_4h_R1 2 SWEETPAAESPAGR 14 0 Q9P1Z0 Q9P1Z0 ZBTB4 Zinc finger and BTB domain-containing protein 4 1 0 SWEET(0.005)PAAES(0.995)PAGR;SWEETPAAES(1)PAGR ; 104.9 0.0011367 6577000 2568.9 2299.3 2497.8 2281.91 2436.7 2342.3 2293.39 2392.23 2711.3 1614.96 TRUE FALSE FALSE 2267.777436 2370.138708 2632.838623 2374.976153 2256.949496 2297.62453 2381.846821 2664.551793 2599.539066 1605.354146 1.412633743 1.476396167 1.640036019 1.479409487 1.405888851 1.431225961 1.483689332 1.659790645 1.619293209 1 10.64867588 -8.819094297 0.543526279 0.957967248 1.515851515 0 0.206385185 0.298852403 0.156955932 0.081582926 0.02254001 1.52E-09 8.819094297 0.557884267 S(ph)TPLEENVVDREQIDFLAAR ddPTM_HeLa_CUDC101_4h_R1 1 STPLEENVVDREQIDFLAAR 20 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 S(0.744)T(0.256)PLEENVVDREQIDFLAAR 58.758 0.015621 5930200 995.95 951.94 791.92 841.73 886.56 562.9 749.1 985.94 1139.6 1084.7 TRUE FALSE FALSE 879.2062508 981.2681431 834.7335906 876.0593877 821.1602351 552.1636204 777.9930379 1098.175424 1092.625206 1078.248156 0.815402508 0.910057798 0.774157216 0.812484012 0.761568875 0.512093266 0.721534309 1.018481152 1.013333711 1 10.07447353 -8.818824022 0.334740073 1.059318728 0.743720033 0.34868192 0.121175613 2.174736767 0.416906881 0.26464366 0.066602839 1.52E-09 8.818824022 -0.315598695 TASDTDSSYCIPTAGMS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 3 TASDTDSSYCIPTAGMSPSR 20 0 Q13480-2;B7Z3B9;Q13480 Q13480-2 GAB1 GRB2-associated-binding protein 1 1 0 TASDTDSSYCIPT(0.001)AGMS(0.939)PS(0.061)R;TAS(0.001)DT(0.025)DS(0.042)S(0.176)Y(0.007)CIPT(0.163)AGMS(0.564)PS(0.021)R;TASDTDSSYCIPT(0.136)AGMS(0.828)PS(0.035)R ;; 139.38 2.24E-05 16101800 3386.12 3482.72 3107.68 3099.95 3355.86 3257.05 3219.24 2904.03 3260.9 1539.87 TRUE FALSE FALSE 2989.204147 3590.018475 3275.690581 3226.37936 3108.304894 3194.927198 3343.407165 3234.613037 3126.484322 1530.710785 1.952820988 2.345327746 2.139980076 2.107765485 2.030628467 2.087218062 2.184218729 2.113144474 2.042504928 1 10.57998601 -8.816207471 0.620954085 0.952599442 2.149510358 0.100332665 0.329908138 0.145977436 0.103256234 0.090003079 0.027380404 1.53E-09 8.816207471 1.196910915 ESPSVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 ESPSVKR 7 1 Q06413-5;Q06413-6;A0A0D9SGI5;A0A0D9SFD0;Q06413-4;Q06413;Q06413-2;Q06413-3;A0A1B0GV32;A0A0R4J2G5;D8L7E9;A0A0D9SGF3;Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q06413-5;Q02078-3;Q02078-8 MEF2C;MEF2A Myocyte-specific enhancer factor 2C;Myocyte-specific enhancer factor 2A 0 1 ; ESPSVK(1)R;ESPSVK(1)R 134.06 0.0019412 24462000 5644.1 5411.8 7620.7 7089.1 4959.2 5008.9 4808.5 3078.1 4935.6 6311.9 FALSE TRUE FALSE 4982.507154 5578.531143 8032.698093 7378.22414 4593.369696 4913.363578 4993.965456 3428.498462 4732.152479 6274.356538 0.794106475 0.889100119 1.280242531 1.175933196 0.732086178 0.783086448 0.795932687 0.54643029 0.754205224 1 12.6152518 -4.502040189 1.039833217 0.939449294 0.4820386 0.352303248 0.167819435 1.245540491 1.367288633 0.027420869 0.570435619 3.15E-05 4.502040189 -0.457410695 SS(ph)PVNNHHS(ph)PGQTPTLGQPEAR ddPTM_HeLa_CUDC101_4h_R1 3 SSPVNNHHSPGQTPTLGQPEAR 22 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;E7EWM2;E7EMW0;Q96L14 H0Y2V6 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 2 0 S(0.471)S(0.547)PVNNHHS(0.979)PGQT(0.002)PT(0.001)LGQPEAR;S(0.442)S(0.558)PVNNHHS(0.996)PGQT(0.003)PT(0.001)LGQPEAR;S(0.514)S(0.607)PVNNHHS(0.88)PGQTPTLGQPEAR ;; 110.7 5.14E-05 36623100 2060.24 1535.01 1574.37 1906.7 2241.74 1810.89 1624.61 1534.72 1848.58 2058.75 TRUE FALSE FALSE 1818.74179 1582.301839 1659.485204 1984.463467 2076.371306 1776.35029 1687.271752 1709.426321 1772.38075 2046.504463 0.888706486 0.773172923 0.810887655 0.969684407 1.014594077 0.867992385 0.82446522 0.835290786 0.866052717 1 10.9989461 -8.816152197 0.90165261 0.993821808 0.875679924 0 0.079591419 0.54717204 0.872809711 0.036806513 0.015240182 1.53E-09 8.816152197 -0.118141883 NLTANDPSQEYVAS(ph)EGEEDPEVEFLK ddPTM_HeLa_CUDC101_4h_R1 1 NLTANDPSQEYVASEGEEDPEVEFLK 26 0 Q86X95 Q86X95 CIR1 Corepressor interacting with RBPJ 1 1 0 NLTANDPSQEY(0.002)VAS(0.998)EGEEDPEVEFLK 122.84 2.61E-10 47132000 5693.3 5365.5 5098.1 4072.6 5940.6 5350.4 5012 4573.7 5445.3 4287.8 TRUE FALSE FALSE 5025.940004 5530.804695 5373.718707 4238.698231 5502.373773 5248.350034 5205.314519 5094.35152 5220.842429 4262.295975 1.1791626 1.297611599 1.260756817 0.994463607 1.290941269 1.231343404 1.221246612 1.195212991 1.224889698 1 12.05741506 -8.81506209 0.692534978 0.997347174 1.211749845 0 0.105788273 0.476136682 0.429334831 0.054492928 0.018122298 1.53E-09 8.81506209 0.21440267 MGPS(ph)GAALGVLILRGNELR ddPTM_HeLa_CUDC101_4h_R1 1 MGPSGAALGVLILRGNELR 19 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 MGPS(1)GAALGVLILRGNELR 43.476 0.033779 1610700 1172.3 942.54 957.82 1054.7 887.03 896.78 926.82 1107.1 978.42 1265.2 TRUE FALSE FALSE 1034.884771 971.5785402 1009.602646 1097.715225 821.5955641 879.6754156 962.5677579 1233.127789 938.0891135 1257.674534 0.822855789 0.772519848 0.80275351 0.872813431 0.653265644 0.699445995 0.765355211 0.980482434 0.745891793 1 10.29654291 -8.815045613 0.553022231 1.016088253 0.780937492 0 0.115332559 0.691577078 0.378181984 0.080102431 0.022475059 1.53E-09 8.815045613 -0.235150762 AT(ph)VVS(ph)IQRRY(ph)RK ddPTM_HeLa_CUDC101_4h_R1 1 ATVVSIQRRYRK 12 3 Q8IZT6 Q8IZT6 ASPM Abnormal spindle-like microcephaly-associated protein 3 0 AT(1)VVS(1)IQRRY(1)RK 59.542 0.037749 17476000 1361 941.6 1081.3 1113 1169.5 990.51 1122.4 1258.7 1362.8 1683.2 TRUE FALSE FALSE 1201.465643 970.6095799 1139.758349 1158.392951 1083.228315 971.6176721 1165.691344 1401.98532 1306.624807 1673.188252 0.718069615 0.580095861 0.681189548 0.69232673 0.64740373 0.580698359 0.696688698 0.837912482 0.780919186 1 10.70838406 -8.813171452 0.695514764 1.002999275 0.669786203 0.367117507 0.095152138 0.272956266 0.248640408 0.048587458 0.016249109 1.54E-09 8.813171452 -0.333213071 TGSPSSS(ph)ASACS(ph)PGGMLSSAGGAPEGKDDKK ddPTM_HeLa_CUDC101_4h_R1 1 TGSPSSSASACSPGGMLSSAGGAPEGKDDKK 31 2 Q96F45 Q96F45 ZNF503 Zinc finger protein 503 2 0 T(0.109)GS(0.11)PS(0.124)S(0.142)S(0.5)AS(0.108)ACS(0.897)PGGMLS(0.005)S(0.005)AGGAPEGKDDKK 67.655 7.11E-05 10195000 2525.5 2550.3 2453.7 2378.1 2802 2255.3 2174 1627 2886.3 1247.2 TRUE FALSE FALSE 2229.464718 2628.87172 2586.354444 2475.089197 2595.302042 2212.28391 2257.851908 1812.211103 2767.325492 1239.781599 1.798272148 2.12043131 2.086137144 1.996391299 2.09335422 1.784414216 1.821169075 1.46171802 2.232107248 1 10.27587028 -8.812976474 0.756141262 1.011703981 1.914689411 0 0.418773301 0.249914059 0.273499948 0.123374652 0.044284121 1.54E-09 8.812976474 0.90298543 NSSLLS(ph)FDNEDENE ddPTM_HeLa_CUDC101_4h_R1 1 NSSLLSFDNEDENE 14 0 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 0 NSS(0.001)LLS(0.999)FDNEDENE 111.07 0.0033154 5903900 3501.5 2954.8 1793.2 2841.9 3710.6 3369 2847.1 2893.3 3444.7 3992.5 TRUE FALSE FALSE 3091.059478 3045.833886 1890.145816 2957.804966 3436.876431 3304.741938 2956.913601 3222.661577 3302.708008 3968.752432 0.778849155 0.767453737 0.476256922 0.745273235 0.865984082 0.832690372 0.74504864 0.812008719 0.832177886 1 11.95446986 -8.812081911 0.799833206 0.993209389 0.750502846 0.208351312 0.111432361 0.443079893 0.547864648 0.059590015 0.022450727 1.54E-09 8.812081911 -0.242706543 LAAQESS(ph)ETEDMSVPR ddPTM_HeLa_CUDC101_4h_R1 1 LAAQESSETEDMSVPR 16 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 LAAQES(0.339)S(0.656)ET(0.005)EDMSVPR 208.85 1.78E-23 11547000 2325.1 1956.2 1749.9 1894.2 2013.7 2163.4 1943.2 1922.9 2122.4 2429.9 TRUE FALSE FALSE 2052.555303 2016.468203 1844.504887 1971.453663 1865.153363 2122.136749 2018.149875 2141.795163 2034.913774 2415.446847 0.849762149 0.834822015 0.763628846 0.816185902 0.772177357 0.878569012 0.83551823 0.886707636 0.842458519 1 11.23807439 -8.810547758 0.68289772 1.001984969 0.824753603 0.08994327 0.060167927 0.285198524 0.249732823 0.026833987 0.008863477 1.55E-09 8.810547758 -0.177231366 VINAAHSFYNGTTTLPISDEDRT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 VINAAHSFYNGTTTLPISDEDRTPR 25 1 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 1 0 VINAAHSFYNGTTTLPIS(0.003)DEDRT(0.997)PR 163.38 2.89E-11 37278000 1022.5 774.8 723.11 863.35 934.47 1122.1 854.9 715.56 1404 1089.4 TRUE FALSE FALSE 902.6441 798.6706696 762.2035139 898.5611447 865.5360098 1100.697812 887.8737794 797.016458 1346.126526 1082.9202 0.833527807 0.737515718 0.703840887 0.829757488 0.799261118 1.016416364 0.819888464 0.735988171 1.243052374 1 10.08071122 -8.809106859 0.854207264 0.992391985 0.812833389 0.471530619 0.115184288 0.43908369 0.6255213 0.044280246 0.01767236 1.55E-09 8.809106859 -0.179558596 SES(ph)PPAELPSLR ddPTM_HeLa_CUDC101_4h_R1 4 SESPPAELPSLR 12 0 Q14669;Q14669-2;Q14669-3;G5E9G6;H7C1L9 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 S(0.025)ES(0.972)PPAELPS(0.003)LR;S(0.371)ES(0.629)PPAELPSLR;S(0.028)ES(0.972)PPAELPSLR;S(0.068)ES(0.932)PPAELPSLR ;;; 159.5 0.0001342 278499000 9494.2 6989.2 7820.8 8178.4 8475.7 8459.8 7392.3 6976.3 8840.2 10386.7 TRUE FALSE FALSE 8381.304268 7204.528968 8243.616105 8511.950502 7850.464497 8298.44341 7677.423487 7770.453793 8475.803214 10324.91945 0.811754931 0.697780647 0.798419411 0.824408418 0.760341477 0.803729603 0.743581926 0.752592195 0.820907442 1 13.33384291 -8.80891943 0.602104207 1.011752541 0.768342363 0.279823278 0.064975148 0.250796208 0.166156269 0.031049083 0.009303034 1.55E-09 8.80891943 -0.243410178 NLSPPNCT(ph)ELQIDSCSSSEEIKK ddPTM_HeLa_CUDC101_4h_R1 1 NLSPPNCTELQIDSCSSSEEIKK 23 1 P38398-8;P38398-4;P38398;P38398-7;Q5YLB2;A0A0A0MSN1;A0A0U1RRA9 P38398-8 BRCA1 Breast cancer type 1 susceptibility protein 1 0 NLS(0.196)PPNCT(0.804)ELQIDSCSSSEEIKK 140.2 2.31E-06 12876000 843.72 916.46 718.54 791.19 993.87 731.21 544.99 740.55 886.24 453.4 TRUE FALSE FALSE 744.8204206 944.6950463 757.3864459 823.458148 920.5541902 717.2633875 566.0104469 824.8512186 849.7088121 450.7031566 1.652574227 2.096047104 1.680455161 1.827052098 2.042484453 1.591431915 1.255838657 1.830142981 1.885295897 1 8.816033744 -8.808666129 0.794528126 1.018052492 1.744841241 0 0.348592797 0.332601457 0.405763999 0.133583927 0.050220587 1.55E-09 8.808666129 0.726788749 LWEDS(ph)AGEK ddPTM_HeLa_CUDC101_4h_R1 2 LWEDSAGEK 9 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;H0Y5B5 Q86U86-8 PBRM1 Protein polybromo-1 1 0 LWEDS(1)AGEK;LWEDS(1)AGEK ; 122.7 0.0050481 15839200 4393.6 4061.7 4134.9 3657.5 4718.5 4154.7 4096 4090.2 4667.8 3027 TRUE FALSE FALSE 3878.588868 4186.836163 4358.445201 3806.668659 4370.425656 4075.45602 4253.984092 4555.811835 4475.391308 3008.995269 1.288997995 1.391439929 1.448471935 1.265096259 1.452453482 1.354424203 1.41375566 1.51406414 1.487337436 1 11.55506612 -8.808273863 0.353577939 0.895576894 1.442118061 0 0.164902555 0.541291005 0.115939065 0.117470314 0.02956072 1.55E-09 8.808273863 0.546541167 AHFNAMFQPS(ph)SPTR ddPTM_HeLa_CUDC101_4h_R1 1 AHFNAMFQPSSPTR 14 0 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 AHFNAMFQPS(0.626)S(0.355)PT(0.019)R 122.14 0.006974 19020000 2119.6 1514.2 1604.2 1902.4 2036.8 1981.3 1714.6 1381.9 1658.2 2389.8 TRUE FALSE FALSE 1871.143701 1560.850707 1690.927904 1979.988095 1886.549322 1943.510004 1780.732696 1539.20991 1589.848294 2375.585363 0.787655847 0.657038358 0.711794209 0.833473773 0.794140826 0.818118361 0.749597436 0.647928689 0.66924486 1 11.21406733 -8.807925561 0.718676538 1.000301892 0.751061867 0 0.117234493 0.308633113 0.302710809 0.04142081 0.01431751 1.56E-09 8.807925561 -0.249240024 VAPEEHPVLLT(ph)EAPLNPK ddPTM_HeLa_CUDC101_4h_R1 1 VAPEEHPVLLTEAPLNPK 18 0 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 VAPEEHPVLLT(1)EAPLNPK 130.73 8.92E-05 20784000 3492.6 2683 3078 2700.9 3127.3 3407.1 3010.1 2880.8 2983.2 3324.9 TRUE FALSE FALSE 3083.202722 2765.66005 3244.40599 2811.054376 2896.605309 3342.115244 3126.200565 3208.738627 2860.231233 3305.123347 0.93285557 0.836779678 0.981629322 0.850514211 0.87639855 1.011192289 0.945865021 0.970837784 0.865393189 1 11.6904884 -8.805072776 0.957242317 0.9952789 0.925396431 0 0.067521675 0.60329172 1.092693481 0.02417302 0.010591956 1.57E-09 8.805072776 -0.069882469 T(ph)T(ph)GIT(ph)T(ph)PVAS(ph)VAFPK ddPTM_HeLa_CUDC101_4h_R1 1 TTGITTPVASVAFPK 15 0 Q8IWI9;H3BU53 Q8IWI9 MGA MAX gene-associated protein 5 0 T(1)T(1)GIT(1)T(1)PVAS(1)VAFPK 41.54 0.0033134 0 1025.4 1123.6 1050 806.24 768.31 903.18 1017.9 559.33 1013.3 777.61 TRUE FALSE FALSE 905.2041664 1158.216784 1106.766176 839.1219521 711.633302 885.9533463 1057.160744 623.0018663 971.5313451 772.9847411 1.171050498 1.498369531 1.431808569 1.085560823 0.920630465 1.14614597 1.367634686 0.805969165 1.256857081 1 9.594296125 -8.803863332 1.128698262 1.01722471 1.185773975 0 0.218079633 0.803956171 2.041424866 0.080046502 0.039295436 1.57E-09 8.803863332 0.168549266 T(ph)CPSLSPTSPLNNK ddPTM_HeLa_CUDC101_4h_R1 1 TCPSLSPTSPLNNK 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 0 T(0.716)CPS(0.271)LS(0.009)PT(0.004)SPLNNK 149.82 0.0011666 14277000 3046.1 2714.1 2893.1 2742.5 3021.5 2887.6 2621.8 2228.2 2855.5 2051.4 TRUE FALSE FALSE 2689.040776 2797.718204 3049.509737 2854.351004 2798.609965 2832.523841 2722.923704 2481.849281 2737.795081 2039.198182 1.318675546 1.371969742 1.495445497 1.399741835 1.372407052 1.389038038 1.335291356 1.217071153 1.342584113 1 10.99378628 -8.801500482 0.688653892 0.996951689 1.373318487 0.071793223 0.122213971 0.242928741 0.21741205 0.04854202 0.016302187 1.58E-09 8.801500482 0.376366798 SNSLSEQLAINTS(ph)PDAVK ddPTM_HeLa_CUDC101_4h_R1 2 SNSLSEQLAINTSPDAVK 18 0 Q5T1M5;Q5T1M5-2;Q5T1M5-3 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 SNSLSEQLAINT(0.229)S(0.771)PDAVK;SNSLSEQLAINT(0.197)S(0.803)PDAVK ; 211.26 4.27E-24 68475000 13806.3 12475.1 11534.7 12135.5 13133.8 10139.9 7612.7 5585.4 13228.9 12972.4 TRUE FALSE FALSE 12187.94644 12859.44304 12158.30077 12630.43814 12164.94574 9946.498302 7906.324389 6221.219359 12683.59914 12895.23959 0.945150833 0.99722405 0.942851871 0.979465178 0.943367175 0.77133102 0.613119619 0.4824431 0.983587707 1 13.65455096 -4.822175909 1.344833482 0.974843559 0.457943851 0.985986213 0.020506044 0.053969698 0.153195251 0.003683298 0.028700203 1.51E-05 4.822175909 -0.516899708 down AS(ph)GS(ph)ENEGDYNPGRK ddPTM_HeLa_CUDC101_4h_R1 1 ASGSENEGDYNPGRK 15 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 2 0 AS(1)GS(1)ENEGDYNPGRK 94.717 0.001231 0 1246.1 1129.3 1331.5 1161.2 1105.7 1157.4 1117.4 674.32 1074.3 862 TRUE FALSE FALSE 1100.034047 1164.092394 1403.484918 1208.558755 1024.134714 1135.324523 1160.498492 751.0818631 1030.016899 856.8727857 1.283777552 1.358535846 1.63791515 1.410429617 1.195200421 1.324962751 1.354341638 0.876538356 1.202065133 1 9.742937222 -8.801410145 0.867974857 1.014719903 1.317568098 0.126087946 0.189485487 0.534830555 0.789494099 0.091006471 0.037072601 1.58E-09 8.801410145 0.302848196 TQT(ph)PPVSPAPQPT(ph)EER ddPTM_HeLa_CUDC101_4h_R1 1 TQTPPVSPAPQPTEER 16 0 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 2 0 T(0.25)QT(0.75)PPVS(0.154)PAPQPT(0.846)EER 174.19 7.43E-06 169240000 4778.2 3978.1 3496.4 3416.4 3391.3 3447.7 2965.6 2266.3 3970.5 5630.3 TRUE FALSE FALSE 4218.106639 4100.660546 3685.42596 3555.735559 3141.130555 3381.940867 3079.984185 2524.286431 3806.834309 5596.810725 0.753662549 0.732678082 0.658486796 0.635314599 0.561235802 0.604262147 0.550310585 0.451022297 0.680179212 1 12.45038924 -8.800738275 0.082898477 1.718408465 5.28E-12 0.458202963 0.10387815 3.228662308 0.090923454 1.182892309 0.698744583 1.58E-09 8.800738275 -1.718408465 MS(ph)CFS(ph)RPSMSPTPLDR ddPTM_HeLa_CUDC101_4h_R1 1 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 MS(0.878)CFS(0.748)RPS(0.171)MS(0.193)PT(0.01)PLDR 54.259 0.032306 6995100 1862.7 1733 1618.5 1823 2099.4 1534.5 1842.9 1544.4 1545.1 1049.5 TRUE FALSE FALSE 1644.35713 1786.391676 1706.001006 1897.34982 1944.531445 1505.231969 1913.98127 1720.208253 1481.410324 1043.257527 1.576175668 1.712320907 1.635263548 1.818678294 1.863903584 1.442819179 1.83462014 1.648881708 1.419985272 1 10.02687961 -8.800495379 0.5287492 0.937620072 1.728912362 0.513597202 0.171716287 0.295663365 0.147462543 0.112858726 0.03131473 1.58E-09 8.800495379 0.79129229 LKS(ph)IS(ph)REPS(ph)PALGPNLDGSGLLPR ddPTM_HeLa_CUDC101_4h_R1 1 LKSISREPSPALGPNLDGSGLLPR 24 2 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 3 0 LKS(1)IS(1)REPS(0.999)PALGPNLDGS(0.001)GLLPR 50.873 0.033543 18731000 2602.1 2280.6 2041.5 1906.8 2319.1 2221.1 2030.6 2044.8 2509.9 2846 TRUE FALSE FALSE 2297.085783 2350.862583 2151.869665 1984.567546 2148.024613 2178.736218 2108.920922 2277.571767 2406.44086 2829.071865 0.811957381 0.830966018 0.760627431 0.70149068 0.75926831 0.770124027 0.745446218 0.805059707 0.850611428 1 11.46611311 -8.797739938 0.447380602 1.033943238 0.751945149 0.512187895 0.054255736 0.321628609 0.11186064 0.040553845 0.010486474 1.59E-09 8.797739938 -0.281998089 TPQEAIMDGTEIAVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 TPQEAIMDGTEIAVSPR 17 0 Q06587 Q06587 RING1 E3 ubiquitin-protein ligase RING1 1 0 TPQEAIMDGTEIAVS(1)PR;TPQEAIMDGTEIAVS(1)PR;TPQEAIMDGTEIAVS(1)PR;TPQEAIMDGTEIAVS(1)PR ;;; 248.23 6.03E-56 71166600 3699.07 3173.23 3095.53 3225.42 2789.24 3471.93 2989.17 3227.85 3656.96 3565.07 TRUE FALSE FALSE 3265.470622 3270.993455 3262.883715 3356.966569 2583.483322 3405.70872 3104.463288 3595.295397 3506.218561 3543.864805 0.92144334 0.923001761 0.920713372 0.947261466 0.729001659 0.961015419 0.876010643 1.014512572 0.989377065 1 11.79110785 -8.79702794 0.52744778 1.007713137 0.902968215 0.183074471 0.070197742 1.315747313 0.653812325 0.06638193 0.018463926 1.60E-09 8.79702794 -0.104744922 YYS(ph)DSDDELTVEQR ddPTM_HeLa_CUDC101_4h_R1 1 YYSDSDDELTVEQR 14 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 YYS(0.954)DS(0.046)DDELTVEQR 216.27 2.46E-24 7874700 964.86 896.66 907.81 685.78 1060.1 948.2 781.21 784.25 886.38 686.82 TRUE FALSE FALSE 851.7605734 924.2850318 956.8889546 713.7490726 981.898535 930.1146648 811.3415314 873.52585 849.8430412 682.7347641 1.247571705 1.353798108 1.401552997 1.045426585 1.43818447 1.362336758 1.188370029 1.279451254 1.2447631 1 9.415181404 -8.796899762 0.677467521 0.995870871 1.294689256 0.108333212 0.130313139 0.45852914 0.396486601 0.072298641 0.024073056 1.60E-09 8.796899762 0.298818385 TFWS(ph)PELK ddPTM_HeLa_CUDC101_4h_R1 1 TFWSPELK 8 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EPP6;O15083 X6RM00 ERC1;ERC2 ELKS/Rab6-interacting/CAST family member 1;ERC protein 2 1 0 T(0.002)FWS(0.998)PELK 101.38 0.017578 107380000 5173.2 4650.3 3941.9 4020.2 4070.1 4067.1 3933.6 3779.8 4797.6 5888 TRUE FALSE FALSE 4566.805338 4793.570231 4155.011038 4184.161133 3769.856832 3989.526844 4085.32027 4210.077154 4599.840897 5852.977914 0.780253301 0.818996808 0.709896927 0.714877314 0.644092099 0.681623424 0.697990037 0.719305149 0.785897532 1 12.51495512 -8.795078139 0.321398031 1.084890482 0.66808656 0.418812311 0.072949677 0.471070786 0.084894699 0.0742083 0.019355668 1.60E-09 8.795078139 -0.416803922 LPDS(ph)DDDEDEETAIQR ddPTM_HeLa_CUDC101_4h_R1 4 LPDSDDDEDEETAIQR 16 0 Q96K21-3;H3BRM1;H3BRF9;Q96K21-4;Q96K21-2;Q96K21 Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR;LPDS(1)DDDEDEETAIQR ;;; 301.04 6.35E-123 442128700 1124.17 839.76 952.85 927.98 936.97 1026.13 966.356 851.51 961.86 1205.5 TRUE FALSE FALSE 992.3964967 865.6320102 1004.363953 965.8270355 867.8515898 1006.55828 1003.628675 948.4424565 922.2117237 1198.329632 0.828149843 0.722365522 0.838136625 0.805977762 0.72421775 0.839967779 0.837523038 0.791470419 0.769581006 1 10.2268091 -8.794924503 0.686883835 1.002094642 0.795726146 0 0.081291666 0.262239958 0.233921857 0.02865871 0.009671548 1.60E-09 8.794924503 -0.206368496 ANSWQLVET(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 2 ANSWQLVETPEK 12 0 F8WF49;A0A0B4J2C2;Q9Y2H0-3;Q9Y2H0-1;Q9Y2H0 F8WF49 DLGAP4 Disks large-associated protein 4 1 0 ANSWQLVET(1)PEK;ANSWQLVET(1)PEK ; 166.64 0.00012618 54775000 7365.9 6901.4 6059.3 6443.5 7171.2 6663.3 5703.2 5597.3 7981.7 7243.3 TRUE FALSE FALSE 6502.480368 7114.023954 6386.884086 6706.293781 6642.194863 6536.208654 5923.174334 6234.474007 7652.690948 7200.216529 0.903095114 0.988029169 0.887040558 0.931401681 0.922499321 0.907779457 0.822638362 0.865873128 1.062841779 1 12.81382458 -8.793864075 0.017118294 1.910668368 7.88E-07 0.628439737 0.040738651 462.0758581 2.584631262 152.3122333 136.1716716 1.61E-09 8.793864075 -1.91066758 ESSTVFELK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 ESSTVFELKR 10 1 B8ZZU8;Q15370;Q15370-2;A0A0B4J296;I3L0M9 B8ZZU8 TCEB2 Transcription elongation factor B polypeptide 2 0 1 ; ESSTVFELK(1)R;ESSTVFELK(1)R 109.44 0.0023376 1325100 414.14 359.83 262.9 454.33 588.76 662.74 473.5 424.92 574.3 322.69 FALSE TRUE FALSE 365.595137 370.9159358 277.1131692 472.8595412 545.3283478 650.0993387 491.7630536 473.2911752 550.6271109 320.7706255 1.139740076 1.156327626 0.86389821 1.474136045 1.700057001 2.026679774 1.533067602 1.475481661 1.716575855 1 8.325398223 -6.057684659 4.028620838 1.062827657 1.690775499 0.432040787 0.259500801 0.077988873 2.556349471 0.024363565 0.042398398 8.76E-07 6.057684659 0.627947842 ESSVK(ac)TVR ddPTM_HeLa_CUDC101_4h_R1 2 ESSVKTVR 8 1 O95696-2;O95696;J3KQ61 O95696-2 BRD1 Bromodomain-containing protein 1 0 1 ; ESSVK(1)TVR;ESSVK(1)TVR 134.77 0.0029187 35557000 4547.5 3865.7 3743.9 4647.2 4458.7 4687.1 4305.1 4556.6 2851.1 2964.07 FALSE TRUE FALSE 4014.448944 3984.797635 3946.306559 4836.732903 4129.790584 4597.701377 4471.149149 5075.304926 2733.576451 2946.43958 1.362474551 1.352411114 1.339347525 1.641551701 1.401620658 1.560426152 1.517475254 1.722521297 0.927755814 1 11.52475697 -10.85934659 0.103410815 5.49E-14 1.93799248 0.877994034 0.084787784 13.00041471 0.195849993 3.823199328 0.789292499 1.38E-11 10.85934659 1.93799248 RTS(ph)SEQAVALPR ddPTM_HeLa_CUDC101_4h_R1 1 RTSSEQAVALPR 12 1 Q14934-18;Q14934-17;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-9;Q14934-10;Q14934-11;Q14934-12;Q14934-13;Q14934-14;Q14934-15;Q14934-16;Q14934-2 Q14934-18 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 RT(0.016)S(0.895)S(0.088)EQAVALPR 111.81 0.0028255 13158000 809.96 720.97 453.71 637.88 999.99 809.03 549.46 630.88 901.1 838.23 TRUE FALSE FALSE 715.0177166 743.1822311 478.238935 663.8955036 926.22273 793.5991007 570.6528563 702.6968291 863.9562766 833.2441707 0.858113074 0.891914108 0.573948132 0.796759854 1.11158621 0.952420825 0.684856704 0.843326427 1.036858471 1 9.702595509 -8.793206763 0.780346453 0.996005421 0.838083347 0.207737518 0.13739529 0.935768783 1.102727112 0.080893677 0.030427876 1.61E-09 8.793206763 -0.157922074 VSGTLDT(ph)PEKTVDSQGPTPVCTPTFLER ddPTM_HeLa_CUDC101_4h_R1 1 VSGTLDTPEKTVDSQGPTPVCTPTFLER 28 1 H7BZL0;Q9BYG3;C9J808 H7BZL0 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 VSGT(0.001)LDT(0.46)PEKT(0.409)VDS(0.122)QGPT(0.007)PVCTPTFLER 72.035 9.24E-05 65378000 1608.8 1647.9 1423 1518.4 1940.5 1387.2 1287.9 894.88 2038.8 1019.9 TRUE FALSE FALSE 1420.218903 1698.669846 1499.931684 1580.326915 1797.353181 1360.741471 1337.574734 996.749522 1954.759801 1013.833589 1.400840254 1.67549178 1.479465368 1.558763619 1.772828598 1.342174382 1.319323751 0.983149042 1.928087431 1 9.985605153 -8.792990773 0.848297621 1.018833595 1.454550623 0 0.349839535 0.449496473 0.633205986 0.10918508 0.044016783 1.61E-09 8.792990773 0.435717028 S(ph)PSVAAMASPQLCR ddPTM_HeLa_CUDC101_4h_R1 2 SPSVAAMASPQLCR 14 0 P25325-2 P25325-2 MPST 3-mercaptopyruvate sulfurtransferase 1 0 S(0.993)PS(0.007)VAAMASPQLCR;S(1)PSVAAMASPQLCR ; 148.85 0.00026898 21055800 834.69 720.56 860.99 840.37 854.8 675.91 734.75 554.22 715.41 525.12 TRUE FALSE FALSE 736.8489035 742.7595995 907.5377238 874.643921 791.743107 663.0181429 763.0895536 617.3101646 685.920497 521.9965629 1.411597232 1.422920479 1.738589463 1.6755741 1.516759234 1.270158062 1.461867008 1.182594309 1.314032593 1 9.027896497 -8.791945583 0.747013823 1.007005384 1.473607354 0.254218556 0.181191674 0.396214922 0.424998336 0.100086941 0.036339666 1.61E-09 8.791945583 0.46660197 SDSS(ph)QPMLLR ddPTM_HeLa_CUDC101_4h_R1 1 SDSSQPMLLR 10 0 A0A075B6G3;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A087WV90;P11532-11;P11532;P11532-8;P11532-14;P11532-6;P11532-15;P11532-5;P11532-7;P11532-12;P11532-2;P11532-17;P11532-3;A0A5H1ZRP7;A0A5H1ZRP9;A0A5H1ZRQ1;A0A5H1ZRQ8;H0Y304;P11532-16;P11532-9;P11532-13;A0A5H1ZRR9 A0A075B6G3 DMD Dystrophin 1 0 S(0.014)DS(0.307)S(0.679)QPMLLR 94.538 0.02218 12798000 1068.7 652.64 887.12 1044.6 856.92 967.43 849 1035.5 909.03 1122.5 TRUE FALSE FALSE 943.428606 672.7470648 935.0803906 1087.203303 793.7067188 948.9778846 881.7462144 1153.377134 871.5593986 1115.82332 0.84549999 0.602915401 0.838018326 0.974350763 0.71131935 0.850473249 0.790220278 1.033655699 0.781090862 1 10.12389289 -8.78954031 0.982270507 0.988013142 0.827151729 0 0.131549193 0.526463328 1.007988861 0.04847914 0.0219555 1.62E-09 8.78954031 -0.160861413 ESTGAQVQVAGDMLPNSTER ddPTM_HeLa_CUDC101_4h_R1 1 ESTGAQVQVAGDMLPNSTER 20 0 Q15366-2;Q15366;Q15366-3;Q15366-6;Q15366-5;Q15366-8;Q15366-4;F8W0G4;P57721;P57721-4;J3QT27;P57721-2;E9PFP8;P57721-5;P57721-3;Q15366-7;F8VXH9;Q15365;H3BRU6;F8VZX2 Q15366-2;Q15365;H3BRU6 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 0 0 98.592 0.0044536 8274600 445.29 316.66 264.5 404.58 393.84 271.95 315.29 306.49 359.69 345.66 FALSE FALSE TRUE 393.0937812 326.4159193 278.7996701 421.0805211 364.7872078 266.7630068 327.4508409 341.3795827 344.863426 343.6039989 1.14403145 0.949977067 0.811398211 1.225482015 1.061650065 0.776367585 0.952989028 0.993526221 1.003665344 1 8.424603017 -5.313389843 24.82374157 1.052402826 0.912163514 0.158844059 0.117839104 349.2390641 166878.0705 0.017429773 0.0389742 4.86E-06 5.313389843 -0.140239312 ESTLHLVLR ddPTM_HeLa_CUDC101_4h_R1 2 ESTLHLVLR 9 0 A0A2R8Y422;P62979;J3QS39;F5H388;Q96C32;Q5PY61;J3QKN0;F5GXK7;F5H747;J3QTR3;F5H265;B4DV12;M0R2S1;F5H2Z3;F5GYU3;F5H6Q2;M0R1M6;P62987;P0CG47;P0CG48 A0A2R8Y422 RPS27A;UBB;UBC;UBA52 Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin 0 0 ; ; 101.65 0.0062418 2167000 1657.29 894.66 997.19 923.81 1578.67 1352.24 1266.75 1533.47 1268.31 1015.35 FALSE FALSE TRUE 1463.024978 922.2234142 1051.101108 961.4869648 1462.214659 1326.448275 1315.608972 1708.034026 1216.029725 1009.310653 1.449528918 0.91371612 1.041404948 0.952617474 1.448726073 1.314212102 1.303472789 1.692277815 1.204812137 1 9.979154571 -1 0.703724587 1.173032896 66.67858608 0.461700583 0.17794954 249.2947428 1.216966816 0.036209399 25746.98041 0.1 1 65.50555318 NQFIVS(ph)HS(ph)ENQERNDSPVPT(ph)HDEVVDVK ddPTM_HeLa_CUDC101_4h_R1 1 NQFIVSHSENQERNDSPVPTHDEVVDVK 28 1 F5GXG5;E9PPH6;Q8NEV8-2;Q8NEV8 F5GXG5 EXPH5 Exophilin-5 3 0 NQFIVS(0.984)HS(0.889)ENQERNDS(0.131)PVPT(0.996)HDEVVDVK 47.807 0.01899 74923000 1857.2 1326.4 1546.1 1294.6 2166.4 1722.9 1686.3 1343.3 2290.4 1804.5 TRUE FALSE FALSE 1639.501831 1367.264812 1629.686843 1347.399384 2006.588988 1690.038553 1751.341156 1496.215842 2195.988743 1793.766754 0.913999453 0.762231103 0.908527733 0.751156404 1.118645434 0.942172972 0.97634832 0.834119508 1.224233161 1 10.80877659 -8.789285194 1.065744243 0.991984638 0.905089318 0.210059183 0.124959251 0.790089722 1.787612139 0.039879987 0.019108833 1.62E-09 8.789285194 -0.08689532 REEPEALY(ph)AAVNK ddPTM_HeLa_CUDC101_4h_R1 1 REEPEALYAAVNK 13 1 A0A087WVF7;Q9NZM3-2;Q9NZM3;Q9NZM3-4;Q9NZM3-3 A0A087WVF7 ITSN2 Intersectin-2 1 0 REEPEALY(1)AAVNK 132.06 0.0010647 7156900 4567.5 2903.7 3298.9 3305.4 3254.5 2608.6 1325.1 558.78 3376 3967.6 TRUE FALSE FALSE 4032.104574 2993.159555 3477.248513 3440.208499 3014.422019 2558.845301 1376.209551 622.3892565 3236.839851 3944.000539 1.022338748 0.758914591 0.881655182 0.872263699 0.764305681 0.648794359 0.348937465 0.157806585 0.820699647 1 11.94544403 -4.818239477 0.671752925 0.993420612 4.28E-32 0.874072645 0.093281512 0.330314127 0.156355353 0.014534 0.216230158 1.52E-05 4.818239477 -0.993420612 down ESTSYIEEHIDR ddPTM_HeLa_CUDC101_4h_R1 1 ESTSYIEEHIDR 12 0 F5H008;A0A2R8YDQ0;Q9H267;Q9H267-2 F5H008 VPS33B Vacuolar protein sorting-associated protein 33B 0 0 99.844 0.00060844 0 2223.5 1974 2287.6 1847.6 2300.8 1974.4 1746.6 1969.7 2473.2 2513.9 FALSE FALSE TRUE 1962.864701 2034.8166 2411.274576 1922.953114 2131.074568 1936.74161 1813.966947 2193.922686 2371.253649 2498.947211 0.785476657 0.814269542 0.964916171 0.769505296 0.85278895 0.775023018 0.725892463 0.877938788 0.948901057 1 11.28710471 -9.374582006 0.792360409 1.017023474 0.816651415 0.462629733 0.065236748 0.497318336 0.480384861 0.066028958 0.012319448 4.22E-10 9.374582006 -0.200372059 MDTT(ph)LINIS(ph)AVCDIGS(ph)AS(ph)FK ddPTM_HeLa_CUDC101_4h_R1 1 MDTTLINISAVCDIGSASFK 20 0 Q2LD37-4;Q2LD37;H3BLT5;H0Y781 Q2LD37-4 KIAA1109 Uncharacterized protein KIAA1109 4 0 MDT(0.464)T(0.55)LINIS(0.986)AVCDIGS(1)AS(1)FK 50.188 0.025078 3898500 1577.4 1535.6 1478.9 1369.7 1560.5 1198 1312.1 1326.8 1602.5 1157 TRUE FALSE FALSE 1392.499563 1582.910016 1558.853807 1425.562286 1445.385024 1175.150146 1362.708137 1477.837549 1536.444272 1150.118113 1.210744834 1.376302137 1.355385843 1.239492075 1.256727468 1.02176475 1.184841906 1.284944157 1.335901291 1 10.16756631 -8.787738769 0.899495252 1.012796866 1.237774095 0 0.137147144 0.383780306 0.61226938 0.048596913 0.020632353 1.63E-09 8.787738769 0.224977229 TSSS(ph)SPANS(ph)DVEIDGIGR ddPTM_HeLa_CUDC101_4h_R1 1 TSSSSPANSDVEIDGIGR 18 0 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 2 0 T(0.038)S(0.013)S(0.085)S(0.599)S(0.279)PANS(0.986)DVEIDGIGR 111.93 0.0038682 14012000 1907.3 1329.9 1486.6 1429.5 1824.4 1897.1 1764.3 1492.6 2019 1992.4 TRUE FALSE FALSE 1683.729185 1370.872643 1566.970093 1487.801189 1689.817647 1860.915978 1832.349642 1662.511551 1935.775965 1980.549116 0.850132507 0.692167961 0.791179618 0.751206409 0.853206635 0.939595975 0.925172533 0.839419501 0.977393567 1 10.95168476 -8.787164046 0.951642126 0.9891317 0.832177625 0.441135979 0.070618169 0.395529277 0.70958212 0.035300287 0.015653653 1.63E-09 8.787164046 -0.156954075 ESVFTVEGGHR ddPTM_HeLa_CUDC101_4h_R1 1 ESVFTVEGGHR 11 0 Q99623-2;Q99623;F5H2D2;F5H0C5;F5H3X6;F5GWA7;F5GY37;J3KPX7 Q99623-2 PHB2 Prohibitin-2 0 0 112.13 0.0059017 7841600 5526.4 4114.7 4224.2 4262 5940.2 5113.4 5053.6 4792.7 4876.7 4739.6 FALSE FALSE TRUE 4878.603769 4241.46903 4452.57303 4435.822782 5502.003281 5015.870415 5248.519045 5338.281595 4675.680362 4711.408648 1.035487289 0.900254965 0.945061947 0.941506694 1.1678043 1.064622237 1.114002082 1.133054251 0.992416645 1 12.20194276 -5.760574335 24.99999802 0.996761644 1.115505211 0.691982572 0.047120141 13.69435419 395749.8971 0.007805552 0.014917354 1.74E-06 5.760574335 0.118743567 VTGTEGSSSTLVDYTSTS(ph)STGGSPVRK ddPTM_HeLa_CUDC101_4h_R1 2 VTGTEGSSSTLVDYTSTSSTGGSPVRK 27 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 VTGTEGSSSTLVDY(0.004)T(0.061)S(0.042)T(0.144)S(0.51)S(0.112)T(0.112)GGS(0.016)PVRK;VTGTEGSSSTLVDYT(0.001)S(0.014)T(0.112)S(0.279)S(0.279)T(0.279)GGS(0.038)PVRK ; 87.704 4.57E-06 298760000 3514.2 3136.2 2829.9 3088.7 3604.1 3509.1 2924.6 2687.8 3509.9 2784.1 TRUE FALSE FALSE 3102.270803 3232.822605 2982.892954 3214.670537 3338.232723 3442.169764 3037.402802 2993.768288 3365.220436 2767.540049 1.120948838 1.168121345 1.077813835 1.161562427 1.206209364 1.243765114 1.097509972 1.081743438 1.215960881 1 11.43438848 -8.785737951 0.500216659 0.984491029 1.156033951 0 0.083562223 0.700083024 0.311561884 0.056463682 0.015461032 1.64E-09 8.785737951 0.171542922 RADSVANK(ac)LGSFGK ddPTM_HeLa_CUDC101_4h_R1 2 RADSVANKLGSFGK 14 2 Q6GQQ9-2;Q6GQQ9 Q6GQQ9-2 OTUD7B OTU domain-containing protein 7B 0 1 ; RADSVANK(1)LGSFGK;RADSVANK(1)LGSFGK 127.07 0.0056388 11023400 3643.3 4869.6 7375.6 10817.2 12397 13527.2 14846.2 19323 1628.7 3603.9 FALSE TRUE FALSE 3216.237897 5019.626604 7774.347246 11258.37217 11482.49801 13269.1912 15418.82291 21522.65221 1561.564297 3582.463843 0.897772605 1.40116602 2.170111853 3.142633859 3.205195785 3.703928855 4.303971676 6.007779327 0.435891153 1 11.80673643 -4.802821029 0.406492276 0.806149545 7.774197354 0.953381311 0.362269311 0.544409861 0.082230279 0.11037297 1.705894375 1.57E-05 4.802821029 6.96804781 up LEGPVS(ph)PDVEPGKEETEESKK ddPTM_HeLa_CUDC101_4h_R1 2 LEGPVSPDVEPGKEETEESKK 21 2 O14686;O14686-3;A0A3B3ISC8 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 LEGPVS(0.994)PDVEPGKEET(0.001)EES(0.006)KK;LEGPVS(1)PDVEPGKEETEESKK ; 79.88 0.0014013 32019000 3409.2 2858.3 2542.7 3089.5 2813.6 2782.2 2822.4 3029.7 3606.6 3531.7 TRUE FALSE FALSE 3009.578744 2946.360835 2680.166053 3215.503164 2606.046333 2729.13417 2931.260913 3374.588802 3457.934421 3510.693291 0.857260516 0.839253273 0.76342928 0.915916857 0.742316721 0.777377556 0.834952151 0.96123145 0.984971951 1 11.77754025 -8.781520551 0.629114895 1.005031738 0.827662554 0.489191871 0.063553255 0.512338021 0.378493776 0.046658951 0.014889735 1.65E-09 8.781520551 -0.177369184 GLGPPS(ph)PPAPPR ddPTM_HeLa_CUDC101_4h_R1 3 GLGPPSPPAPPR 12 0 Q13425;A0A140TA73;Q13425-2 Q13425 SNTB2 Beta-2-syntrophin 1 0 GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR;GLGPPS(1)PPAPPR ;; 106.67 0.0065905 843350100 4427.24 3449.51 3730.46 3979.93 3765.87 3419.02 3448.92 4123.79 4064.09 4501.15 TRUE FALSE FALSE 3908.285638 3555.785314 3932.139952 4142.248748 3488.069273 3353.80789 3581.946 4593.225585 3896.56649 4474.37696 0.873481531 0.794699541 0.878812846 0.925771071 0.779565357 0.749558636 0.800546318 1.02656205 0.870862363 1 12.12747109 -8.780183199 0.606707955 1.00662944 0.843478294 0.041766077 0.086337771 0.734659479 0.501236767 0.060769285 0.01889571 1.66E-09 8.780183199 -0.163151147 VVTS(ph)ENEAGK ddPTM_HeLa_CUDC101_4h_R1 3 VVTSENEAGK 10 0 P49321;P49321-3;P49321-4;E9PPR5 P49321 NASP Nuclear autoantigenic sperm protein 1 0 VVT(0.001)S(0.999)ENEAGK;VVT(0.227)S(0.773)ENEAGK;VVT(0.063)S(0.937)ENEAGK ;; 196.16 9.80E-17 85786000 19844 16043.6 16649.3 16394.5 16399.5 16884.2 17637.9 16579.3 17811.2 20022.9 TRUE FALSE FALSE 17517.9164 16537.8843 17549.41152 17063.13857 15189.74156 16562.16202 18318.19971 18466.6205 17077.0148 19903.8029 0.880129113 0.830890679 0.88171148 0.857280323 0.763157756 0.832110431 0.920336671 0.927793577 0.857977487 1 14.28075648 -8.779808324 0.665385551 1.00207095 0.856609662 0 0.062027462 0.441189648 0.369015645 0.033528582 0.011203983 1.66E-09 8.779808324 -0.145461288 TS(ph)PQPESGIK ddPTM_HeLa_CUDC101_4h_R1 1 TSPQPESGIK 10 0 A0A1B0GVV3;Q5EBL4-3;Q5EBL4-2;Q5EBL4 A0A1B0GVV3 RILPL1 RILP-like protein 1 1 0 T(0.451)S(0.548)PQPES(0.001)GIK 99.752 0.016522 24919000 4959.1 4147.2 3673.8 4148.4 3867.6 3904.7 3418.2 3630.8 3936.4 5621.9 TRUE FALSE FALSE 4377.801816 4274.970316 3872.416741 4317.589683 3582.294853 3830.224353 3550.041119 4044.115596 3774.139926 5588.460689 0.783364518 0.764963834 0.692930837 0.77259015 0.641016382 0.685380924 0.635244894 0.723654656 0.675345169 1 12.44823524 -8.778212647 0.304355133 1.097007045 0.652254388 0 0.107596388 0.502027166 0.082761119 0.082133491 0.022199859 1.67E-09 8.778212647 -0.444752657 T(ph)TSPPLSIPTTHLIHQPAGSR ddPTM_HeLa_CUDC101_4h_R1 2 TTSPPLSIPTTHLIHQPAGSR 21 0 Q5T5U3;A0A087WW76;A0A452Q6Z5;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 T(0.333)T(0.333)S(0.333)PPLSIPTTHLIHQPAGSR;T(0.333)T(0.333)S(0.333)PPLSIPTTHLIHQPAGSR ; 143 8.28E-07 73915000 1566.56 1265.65 1138.93 1037.58 1572.21 1444.09 1188.74 1136.83 1820.82 1873.4 TRUE FALSE FALSE 1382.930212 1304.643176 1200.504001 1079.896997 1456.231201 1416.546389 1234.5901 1266.242132 1745.765029 1862.256933 0.74260978 0.700570986 0.644650037 0.579886147 0.781971153 0.76066109 0.662953687 0.679950285 0.937445847 1 10.86283642 -8.777375648 0.6043319 1.012821196 0.684425414 0.786018244 0.057364282 0.284311946 0.19253522 0.047244434 0.014692578 1.67E-09 8.777375648 -0.328395782 T(ph)GSYGALAEITASK ddPTM_HeLa_CUDC101_4h_R1 2 TGSYGALAEITASK 14 0 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIS4;H0YHI8;A0A3B3ISH4;F8VZN8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 T(0.745)GS(0.255)YGALAEITASK;T(0.732)GS(0.268)YGALAEITASK ; 199.33 6.67E-16 205327000 8338 7627 7014.5 7047 8387 8318.3 7219 5666.3 6690.2 6589.6 TRUE FALSE FALSE 7360.63228 7861.97883 7393.725088 7334.40712 7768.307719 8159.642287 7497.439248 6311.328688 6414.427124 6550.404766 1.123691213 1.200227942 1.128743238 1.11968762 1.185927892 1.245669936 1.144576483 0.963502091 0.979241337 1 12.67736834 -8.775859886 0.726143573 1.001069194 1.146150053 0.404745207 0.071044427 0.555609651 0.563222723 0.043109121 0.01554112 1.68E-09 8.775859886 0.145080859 TDY(ph)IPLLDVDEK ddPTM_HeLa_CUDC101_4h_R1 1 TDYIPLLDVDEK 12 0 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;H7C456;A0A0J9YW37;A0A0J9YVV8;P27816-7 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 T(0.036)DY(0.964)IPLLDVDEK 124.67 0.01513 3326200 2743.4 2435.9 1999.1 2140.2 2445.9 1737.6 998.03 611.56 2322.6 2993.8 TRUE FALSE FALSE 2421.822811 2510.947192 2107.177393 2227.486607 2265.47083 1704.458175 1036.524351 681.1775184 2226.861445 2975.992744 0.813786531 0.843734312 0.708058646 0.748485228 0.761248775 0.572735998 0.348295322 0.228890853 0.748275159 1 11.53915529 -4.759538634 0.444178832 0.928610413 6.33E-36 0.845860874 0.086801439 0.784306227 0.138947206 0.020765856 0.353462933 1.74E-05 4.759538634 -0.928610413 down ESYDDVSSFR ddPTM_HeLa_CUDC101_4h_R1 1 ESYDDVSSFR 10 0 H7C2Q8;Q99848 H7C2Q8 EBNA1BP2 Probable rRNA-processing protein EBP2 0 0 167.12 5.41E-05 15889000 2829.3 2188.6 2141.7 2569.7 2589.1 2434.5 2245.1 2468.2 2610.8 2191.3 FALSE FALSE TRUE 2497.653743 2256.028172 2257.48678 2674.503473 2398.107251 2388.065969 2331.694259 2749.169911 2503.181719 2178.26605 1.14662474 1.035699093 1.036368712 1.227813046 1.100924862 1.096315103 1.070435936 1.26209097 1.149162527 1 11.08896446 -13.52287875 0.248990215 0.234934428 1.135691496 0 0.083912057 43.16083664 0.569776834 16.26102642 0.041344084 3.00E-14 13.52287875 0.900757068 SPSPPDGS(ph)PAATPEIR ddPTM_HeLa_CUDC101_4h_R1 3 SPSPPDGSPAATPEIR 16 0 O00499-6;O00499-11;O00499-2;O00499;O00499-9;O00499-10;O00499-7;O00499-8;O00499-4;O00499-3;O00499-5 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 S(0.001)PS(0.001)PPDGS(0.997)PAAT(0.001)PEIR;SPS(0.001)PPDGS(0.998)PAAT(0.001)PEIR;S(0.007)PS(0.009)PPDGS(0.983)PAAT(0.001)PEIR ;; 227.63 5.98E-33 469091000 3749.37 3074.84 3018.55 2525.12 3268.64 3175.28 3484.19 3556.35 3644.26 3898 TRUE FALSE FALSE 3309.874532 3169.572176 3181.741944 2628.105308 3027.518939 3114.716824 3618.576375 3961.190509 3494.04206 3874.814523 0.854202056 0.817993263 0.821133999 0.678253189 0.781332609 0.803836366 0.933870861 1.022291644 0.901731435 1 11.91991154 -8.775685973 0.779724899 0.995469896 0.832177427 0.167118046 0.090712731 0.582508951 0.68852447 0.051752553 0.019799595 1.68E-09 8.775685973 -0.163292469 ESYSIYVYK ddPTM_HeLa_CUDC101_4h_R1 1 ESYSIYVYK 9 0 Q16778;Q8N257;Q6DRA6;Q6DN03 Q16778;Q8N257;Q6DRA6 HIST2H2BE;HIST3H2BB;HIST2H2BD;HIST2H2BC Histone H2B type 2-E;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C 0 0 179.89 0.0090757 3761500 2126.8 2428.6 1869.2 2020.4 2280.6 2462.1 2036 1877.5 2307.4 1854.8 FALSE FALSE TRUE 1877.499728 2503.422287 1970.254606 2102.800645 2112.364682 2415.139545 2114.529202 2091.227011 2212.287995 1843.767567 1.018295235 1.357775422 1.068602486 1.140491178 1.145678403 1.309893713 1.146852369 1.134214013 1.199873582 1 10.84844108 -7.47452744 24.91327699 1.008071371 1.182075469 0.122814573 0.101746113 207.2907214 106808.3047 0.013114241 0.014959882 3.35E-08 7.47452744 0.174004098 ESYSVYVYK ddPTM_HeLa_CUDC101_4h_R1 3 ESYSVYVYK 9 0 O60814;P57053;P58876;P62807;Q5QNW6;Q5QNW6-2;Q93079;U3KQK0;Q99877;Q99879;Q99880 O60814;P58876;P62807;Q5QNW6;Q93079;U3KQK0;Q99879;Q99880 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BF;HIST1H2BH;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-F;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 0 0 ;; ;; 190.51 1.23E-10 205478000 7550.1 7062.1 6652 7480.7 7193.9 7710.7 6926.6 6823 7014.8 5496.7 FALSE FALSE TRUE 6665.088723 7279.67493 7011.627241 7785.79528 6663.220329 7563.631244 7193.761282 7599.70274 6725.646975 5464.005384 1.219817378 1.332296442 1.283239446 1.424924526 1.219475433 1.384264969 1.316572876 1.390866627 1.230900503 1 12.41574319 -8.354281198 0.450064613 0.974910554 1.357293972 0.415250599 0.089290042 0.282721586 0.124311843 0.046779575 0.019421543 4.42E-09 8.354281198 0.382383417 LT(ph)PEEEEILNK ddPTM_HeLa_CUDC101_4h_R1 1 LTPEEEEILNK 11 0 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 1 0 LT(1)PEEEEILNK 195.77 4.45E-20 0 1968.9 2007.4 1749.8 1512.7 1890.7 1742.8 1599.1 1560.2 1643.4 1577.9 TRUE FALSE FALSE 1738.108527 2069.245615 1844.399481 1574.394444 1751.226828 1709.558994 1660.777823 1737.806861 1575.658356 1568.514581 1.108123921 1.319239005 1.17588928 1.003748683 1.116487439 1.089922284 1.058822049 1.107931595 1.004554485 1 10.61518322 -8.774437319 1.08247043 1.010599716 1.120273351 0.266178795 0.078686201 0.515691193 1.205766775 0.032743255 0.016045115 1.68E-09 8.774437319 0.109673634 VGQQAIVLCIS(ph)PSKPNPVFK ddPTM_HeLa_CUDC101_4h_R1 1 VGQQAIVLCISPSKPNPVFK 20 1 C9JP85;Q16656-2;Q16656;Q16656-4 C9JP85 NRF1 Nuclear respiratory factor 1 1 0 VGQQAIVLCIS(0.895)PS(0.105)KPNPVFK 98.3 0.00052918 34408000 3088 2884.8 2789 3093.2 3388.2 3082 2206.2 2583.9 2974.5 1746.1 TRUE FALSE FALSE 2726.029321 2973.677269 2939.781776 3219.354066 3138.259236 3023.215985 2291.293873 2878.040732 2851.889851 1735.71412 1.570552023 1.713229866 1.693701597 1.854772067 1.808050762 1.741770693 1.320087131 1.658130621 1.643064269 1 10.76131363 -8.770416445 0.653298762 0.988111682 1.68659245 0.051984193 0.237370656 0.294849492 0.237724747 0.106741496 0.03550323 1.70E-09 8.770416445 0.698480768 KPPAPPS(ph)PVQSQSPSTNWSPAVPVKK ddPTM_HeLa_CUDC101_4h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3;Q8IYB3-2 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KPPAPPS(0.989)PVQS(0.01)QS(0.001)PSTNWSPAVPVKK 91.337 4.25E-06 155930000 2943 2675.9 2844.2 2393.4 2961.2 2308.4 2338.6 2759.5 2553.8 2238.6 TRUE FALSE FALSE 2598.026001 2758.341307 2997.966055 2491.013197 2742.758176 2264.371116 2428.800585 3073.630326 2448.531283 2225.284708 1.167502744 1.239545348 1.347228085 1.119413255 1.232542589 1.017564678 1.091456108 1.381230148 1.100322702 1 11.11977421 -8.767823273 0.817328725 1.007058848 1.193704666 0.21311039 0.108824455 0.536964391 0.703082084 0.054940119 0.022020449 1.71E-09 8.767823273 0.186645818 VDS(ph)LVSLSEEDLESDQREHR ddPTM_HeLa_CUDC101_4h_R1 1 VDSLVSLSEEDLESDQREHR 20 1 Q12802-4;Q12802;Q12802-2;A0A087WTD7;A8MYJ1;A0A087WY36;H0YMW2;H0YLH1 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 VDS(0.684)LVS(0.071)LS(0.245)EEDLESDQREHR 52.657 0.027414 2563600 1036.6 873.29 623.43 824.04 893.98 911.17 758.87 775.46 810.82 1312.1 TRUE FALSE FALSE 915.0913194 900.1950298 657.1345116 857.647913 828.0328765 893.7909504 788.1398701 863.7352319 777.3976564 1304.295571 0.701598119 0.690177173 0.50382331 0.65755641 0.634850639 0.685267182 0.604264775 0.662223541 0.596028748 1 10.34905513 -8.765179253 0.5635416 1.021939325 0.625845156 0 0.133531134 0.235096924 0.137221344 0.045831734 0.013755655 1.72E-09 8.765179253 -0.396094169 TPADRGPS(ph)PAPAPAASPQPGSR ddPTM_HeLa_CUDC101_4h_R1 3 TPADRGPSPAPAPAASPQPGSR 22 1 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 1 0 T(0.005)PADRGPS(0.995)PAPAPAASPQPGSR;T(0.241)PADRGPS(0.759)PAPAPAASPQPGSR;T(0.012)PADRGPS(0.988)PAPAPAASPQPGSR ;; 75.82 0.0011678 26767800 2171.03 1785.12 1867.73 1692.19 2126.64 1880.09 1614.7 1908.61 1825.53 2094.44 TRUE FALSE FALSE 1916.545154 1840.117431 1968.705133 1761.204822 1969.762004 1844.230416 1676.97952 2125.878448 1750.280881 2081.982178 0.920538694 0.883829579 0.945591732 0.845926945 0.946099359 0.885805093 0.805472563 1.021083884 0.84068005 1 11.023742 -8.763397468 0.541607106 1.007313986 0.898338426 0 0.074640193 0.894398803 0.478865252 0.047229118 0.013849749 1.72E-09 8.763397468 -0.10897556 T(ph)PPGPCCSPGVGWAQR ddPTM_HeLa_CUDC101_4h_R1 2 TPPGPCCSPGVGWAQR 16 0 H3BSW6;Q2VPK5-3;Q2VPK5;Q2VPK5-5 H3BSW6 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 1 0 T(0.954)PPGPCCS(0.046)PGVGWAQR;T(0.999)PPGPCCS(0.001)PGVGWAQR ; 132.32 0.0021882 18789600 448.52 276.213 362.83 495.22 332.82 525.21 403.53 217.29 483.14 453.72 TRUE FALSE FALSE 395.9451655 284.7227951 382.4456873 515.4172121 308.2685317 515.1924943 419.0942873 242.0254153 463.2247647 451.0212533 0.877885826 0.631284653 0.847954912 1.142778103 0.683490034 1.142279861 0.929211837 0.536616431 1.027057509 1 8.817051608 -8.760571667 1.036320565 0.988772493 0.861835054 0.100994241 0.188603953 1.00504108 2.153968747 0.072860919 0.035114404 1.74E-09 8.760571667 -0.126937439 S(ph)PGRRSPSPVPT(ph)PAPSMTNGRYHK ddPTM_HeLa_CUDC101_4h_R1 1 SPGRRSPSPVPTPAPSMTNGRYHK 24 3 Q9H5P4 Q9H5P4 PDZD7 PDZ domain-containing protein 7 2 0 S(0.958)PGRRS(0.024)PS(0.022)PVPT(0.734)PAPS(0.089)MT(0.089)NGRY(0.084)HK 44.729 0.032662 6956200 2238.7 1746.6 1766.1 1956.8 1726.7 1703.7 1339.4 1886.1 1927 2529.5 TRUE FALSE FALSE 1976.28298 1800.410676 1861.580708 2036.606762 1599.324781 1671.204761 1391.061107 2100.806 1847.568244 2514.454422 0.785968902 0.716024383 0.740351741 0.809959705 0.636052405 0.664639115 0.553225819 0.83549178 0.734778976 1 11.29602969 -8.758765895 0.318388332 1.087939969 0.659799181 0.068624261 0.112178546 1.005882123 0.182078592 0.162412696 0.044077248 1.74E-09 8.758765895 -0.428140787 RVPLS(ph)PLSLLAGPADAR ddPTM_HeLa_CUDC101_4h_R1 1 RVPLSPLSLLAGPADAR 17 1 Q5T4K5;Q53ET0;H0YDQ8 Q5T4K5 CRTC2 CREB-regulated transcription coactivator 2 1 0 RVPLS(0.999)PLS(0.001)LLAGPADAR 89.756 0.003805 6674000 1054.7 773.14 759.2 1004.6 1120.1 776.71 650.31 958 982.56 1157.8 TRUE FALSE FALSE 931.0696648 796.959527 800.2446485 1045.57193 1037.472455 761.8955508 675.3926745 1067.054848 942.0584609 1150.913354 0.808983284 0.692458319 0.69531268 0.908471456 0.901434023 0.661992102 0.586831904 0.927137429 0.818531176 1 10.16856351 -8.756552538 0.640082542 1.006041386 0.762583906 0.094679963 0.122462296 0.642006164 0.497586384 0.080228017 0.026650433 1.75E-09 8.756552538 -0.243457481 APSAGLEEVAQPESVDVITSQSDS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 APSAGLEEVAQPESVDVITSQSDSPTR 27 0 A0A087WU78;A0A087WWC4;Q6T4R5-4;Q6T4R5-3;Q6T4R5-2;Q6T4R5 A0A087WU78 NHS Nance-Horan syndrome protein 1 0 APSAGLEEVAQPESVDVIT(0.007)S(0.005)QS(0.431)DS(0.433)PT(0.123)R 128.87 3.63E-11 4828200 1482.7 1137.2 1028.4 1279.6 1313 1162.3 1201.6 1390.5 1547.1 1678.9 TRUE FALSE FALSE 1308.900154 1172.235784 1083.998415 1331.787619 1216.142606 1140.131064 1247.946115 1548.788899 1483.327883 1668.913828 0.784282646 0.702394434 0.649523299 0.797996635 0.728703055 0.683157539 0.747759467 0.92802209 0.888798366 1 10.70469375 -8.756382138 0.73753562 0.996270091 0.744463962 0.463639306 0.079339958 0.323875375 0.341580374 0.043522748 0.016213462 1.75E-09 8.756382138 -0.251806128 SSSYADPWT(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 SSSYADPWTPPR 12 0 A0A0C4DGA7;O94929-2;O94929-3;O94929;A0A0A0MRD5;O94929-4 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 SSSYADPWT(0.999)PPR 98.368 0.0030258 0 498.94 387.72 322.14 511.66 428.16 376.03 429.71 391.6 487.35 554.04 TRUE FALSE FALSE 440.4550095 399.6651936 339.5558628 532.5277064 396.5754898 368.8578543 446.2840586 436.1781611 467.2612267 550.7445454 0.799744661 0.725681619 0.616539675 0.966923251 0.720071571 0.669743999 0.810328604 0.791979085 0.848417348 1 9.105239491 -8.754949492 0.684828722 1.001168965 0.757586183 0.250835866 0.099691224 0.449411805 0.403920171 0.05728757 0.02011336 1.76E-09 8.754949492 -0.243582782 GPRT(ph)PS(ph)PPPPIPEDIALGK ddPTM_HeLa_CUDC101_4h_R1 2 GPRTPSPPPPIPEDIALGK 19 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 GPRT(1)PS(1)PPPPIPEDIALGK;GPRT(1)PS(1)PPPPIPEDIALGK ; 90.534 0.0050171 18254800 10030.3 8324.5 8080.4 7774.7 9213.1 8516.2 7940.1 7631.3 9296.8 10479.8 TRUE FALSE FALSE 8854.563439 8580.967978 8517.250866 8091.785871 8533.467968 8353.767674 8246.352317 8500.016345 8913.581969 10417.46568 0.849972892 0.823709743 0.817593369 0.776751862 0.819150092 0.801900186 0.791589103 0.815938982 0.855638237 1 13.34671673 -8.75467569 0.449470991 1.026693761 0.795666616 0.40354115 0.045880897 0.158048245 0.056835964 0.016319936 0.004431605 1.76E-09 8.75467569 -0.231027144 ETDLQELFRPFGSISR ddPTM_HeLa_CUDC101_4h_R1 2 ETDLQELFRPFGSISR 16 1 O75821;K7ENA8;K7EP16 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G 0 0 ; ; 95.854 0.007285 36355000 3331.6 2624.9 2426.5 2493.4 2851.1 2959.1 2570 2193.6 2764.1 2991.8 FALSE FALSE TRUE 2941.074898 2705.770058 2557.68393 2595.091629 2640.780033 2902.660098 2669.125761 2443.310557 2650.162628 2974.004641 0.988927475 0.909806939 0.860013429 0.872591654 0.887954241 0.976010615 0.897485406 0.821555731 0.89110911 1 11.53819118 -7.221583412 3.52215045 0.995348931 0.889707256 0.227150696 0.049265109 0.113389559 2.902946673 0.00640733 0.007726028 6.00E-08 7.221583412 -0.105641675 ACKVDS(ph)PTVTTTLK ddPTM_HeLa_CUDC101_4h_R1 2 ACKVDSPTVTTTLK 14 1 Q07866-6;Q07866-4;G3V5R9;Q07866-9;Q07866-7;H0YG16;G3V3H3;Q07866-10;Q07866-5;Q07866-3;G5E9S8;F8W6L3;Q07866;Q07866-8;Q07866-2;G3V2E7;E7EVH7;H0YJT3;H0YJL0;H0YJU9 Q07866-6 KLC1 Kinesin light chain 1 1 0 ACKVDS(0.815)PT(0.178)VT(0.004)T(0.002)TLK;ACKVDS(0.925)PT(0.074)VT(0.001)TTLK ; 126.07 0.0054784 126757000 6795.5 6739.3 6415 6657.6 8713.4 6551.1 7381.1 6199.4 6825 2295.39 TRUE FALSE FALSE 5998.941791 6946.929845 6761.814304 6929.125705 8070.629842 6426.148682 7665.791499 6905.114637 6543.670611 2281.736918 2.629111947 3.044579675 2.963450453 3.036776786 3.53705538 2.816340758 3.359629867 3.026253633 2.867846227 1 11.15591674 -8.753120743 0.45049842 0.709440817 3.227564906 0.150224451 0.605637756 0.202869506 0.073368952 0.228544884 0.062210124 1.77E-09 8.753120743 2.518124089 ALPDSQQVPSS(ph)PASK ddPTM_HeLa_CUDC101_4h_R1 1 ALPDSQQVPSSPASK 15 0 O14924-7;O14924-6;O14924-2;O14924-3;O14924-5;O14924-4;O14924 O14924-7 RGS12 Regulator of G-protein signaling 12 1 0 ALPDSQQVPS(0.006)S(0.992)PAS(0.003)K 180.7 7.62E-09 9251200 3572.1 3085.4 2530.5 3287.6 3277.3 2813 3006 3085.5 3321.3 3548.9 TRUE FALSE FALSE 3153.383853 3180.457517 2667.306484 3421.682538 3035.540108 2759.346712 3121.942427 3436.740848 3184.394608 3527.790985 0.893869242 0.901543637 0.756084047 0.969922128 0.860464841 0.782174092 0.884956745 0.974190609 0.902659659 1 11.78454937 -8.752777077 0.647269033 1.002104849 0.871422454 0.088129392 0.071634767 0.666756452 0.530320876 0.044836543 0.015084374 1.77E-09 8.752777077 -0.130682395 EKPCVS(ph)PTVGEK ddPTM_HeLa_CUDC101_4h_R1 1 EKPCVSPTVGEK 12 1 Q68DQ2 Q68DQ2 CRYBG3 Very large A-kinase anchor protein 1 0 EKPCVS(0.995)PT(0.005)VGEK 87.669 0.013783 30736000 6134.7 5960.1 5924.7 5325.6 6416.6 5548.4 5337.6 5224.7 5958.7 3610.8 TRUE FALSE FALSE 5415.599766 6143.723617 6245.007203 5542.800987 5943.260202 5442.573514 5543.47302 5819.458729 5713.079864 3589.322801 1.508808225 1.711666506 1.739884527 1.544247005 1.655816579 1.516323222 1.544434237 1.621324983 1.591687396 1 11.80949596 -8.751904721 0.682320875 0.997068428 1.615834267 0.03338413 0.192955321 0.175815684 0.156929173 0.056826371 0.019955518 1.77E-09 8.751904721 0.618765839 IPAS(ph)QTSVPFDHLGK ddPTM_HeLa_CUDC101_4h_R1 1 IPASQTSVPFDHLGK 15 0 H0Y5S9;H0Y682;P49674 H0Y5S9 CSNK1E Casein kinase I isoform epsilon 1 0 IPAS(0.585)QT(0.208)S(0.208)VPFDHLGK 70.784 0.024311 11461000 1619.6 1349.4 1121.4 1547.4 1226.2 1362.5 1308.2 1604.2 1162.3 1668.9 TRUE FALSE FALSE 1429.752943 1390.973415 1182.026276 1610.50966 1135.745669 1336.512583 1358.657712 1786.815644 1114.389502 1658.973309 0.861829986 0.838454367 0.712504698 0.970786963 0.68460756 0.805626333 0.818975028 1.077061116 0.671734437 1 10.69607496 -8.750627788 0.743661223 0.996972993 0.837020081 0 0.147479234 0.695647972 0.748094684 0.059391561 0.022406186 1.78E-09 8.750627788 -0.159952912 ETDYPAGEDLSESGQVDK ddPTM_HeLa_CUDC101_4h_R1 2 ETDYPAGEDLSESGQVDK 18 0 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5;H0YBS5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 0 0 ; ; 263.59 5.76E-70 12017800 2324.3 2273.6 2220.56 2219.06 2138.25 1806.01 1903.19 2049.08 2381.55 1925.67 FALSE FALSE TRUE 2051.849077 2343.646921 2340.61019 2309.562858 1980.515557 1771.563368 1976.596676 2282.338985 2283.381501 1914.216029 1.071900478 1.224337737 1.222751327 1.206531981 1.034635343 0.92547724 1.032588091 1.192310037 1.192854655 1 10.90253794 -8.094676943 1.47985054 1.017866705 1.111961969 0 0.109408499 0.534605217 2.391776957 0.025099055 0.02077474 8.04E-09 8.094676943 0.094095264 QQQLEEEAAKPPEPEKPVS(ph)PPPVEQK ddPTM_HeLa_CUDC101_4h_R1 2 QQQLEEEAAKPPEPEKPVSPPPVEQK 26 2 A0A088AWL3;O75376;O75376-2;E7EVU5;E7EW50;J3KS51;O75376-3 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 QQQLEEEAAKPPEPEKPVS(1)PPPVEQK;QQQLEEEAAKPPEPEKPVS(1)PPPVEQK ; 55.994 0.0026817 242190000 4239.3 3677.5 3653.9 3613.9 3460.7 3538.7 3292.3 3779.5 3672 4156.4 TRUE FALSE FALSE 3742.37568 3790.799416 3851.440886 3761.290463 3205.411056 3471.205193 3419.285114 4209.743003 3520.638606 4131.677548 0.905776319 0.917496434 0.932173637 0.91035431 0.77581346 0.840144264 0.827577921 1.018894373 0.852108754 1 12.01251195 -8.750250543 0.367310448 1.024256523 0.869555163 0 0.076926442 1.712839954 0.408857626 0.10747399 0.028635413 1.78E-09 8.750250543 -0.15470136 S(ph)CHDLDLLGQSPGWGQTQAVETNIVCK ddPTM_HeLa_CUDC101_4h_R1 4 SCHDLDLLGQSPGWGQTQAVETNIVCK 27 0 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 S(1)CHDLDLLGQSPGWGQTQAVETNIVCK;S(1)CHDLDLLGQSPGWGQTQAVETNIVCK;S(0.999)CHDLDLLGQS(0.001)PGWGQTQAVETNIVCK;S(0.999)CHDLDLLGQS(0.001)PGWGQTQAVETNIVCK ;;; 134.15 1.39E-11 73861000 2934.51 2700 2142.23 2138.12 3459.78 3144 2935.98 3172.53 2459.87 1453.99 TRUE FALSE FALSE 2590.531186 2783.1838 2258.045434 2225.321775 3204.558922 3084.033438 3049.221732 3533.677991 2358.473117 1445.341603 1.792331433 1.92562353 1.562291869 1.539651091 2.217163691 2.133774765 2.109689312 2.444873921 1.63177557 1 10.49719479 -8.744884394 0.122683509 5.41E-16 2.843096058 0.566977737 0.262630557 5.382024514 0.244460466 3.758934232 1.833038735 1.80E-09 8.744884394 2.843096058 SFEVEEVET(ph)PNST(ph)PPRR ddPTM_HeLa_CUDC101_4h_R1 1 SFEVEEVETPNSTPPRR 17 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 2 0 S(0.001)FEVEEVET(0.958)PNS(0.343)T(0.698)PPRR 84.113 0.0055793 8603800 2637.5 1780.2 2211.6 2076.5 2244.7 2269.3 1683.7 1181.7 2510.6 2962 TRUE FALSE FALSE 2328.336248 1835.045852 2331.165786 2161.188645 2079.112953 2226.016883 1748.640873 1316.219951 2407.112005 2944.381892 0.790772506 0.62323636 0.791733502 0.73400419 0.706128834 0.756021795 0.593890649 0.447027593 0.817527105 1 11.52374909 -8.744798337 0.065018506 1.754139974 1.68E-12 0.55823723 0.093800479 20.04540441 0.45041734 7.265458142 4.85931096 1.80E-09 8.744798337 -1.754139974 TATDS(ph)DERIDDEIDTEVEETQEEK ddPTM_HeLa_CUDC101_4h_R1 1 TATDSDERIDDEIDTEVEETQEEK 24 1 A0A0C4DGZ1;Q8N5P1 A0A0C4DGZ1 ZC3H8 Zinc finger CCCH domain-containing protein 8 1 0 T(0.01)AT(0.011)DS(0.979)DERIDDEIDTEVEETQEEK 122.65 9.25E-09 25036000 2829.1 2367.4 1988.6 2067.9 2790.9 2673.6 2389.4 2462.4 2684.5 2866.2 TRUE FALSE FALSE 2497.477187 2440.336788 2096.109731 2152.2379 2585.020867 2622.605535 2481.559958 2742.709663 2573.843774 2849.151715 0.87656869 0.856513458 0.735696074 0.755396032 0.907294916 0.920486445 0.870982035 0.962640792 0.903371962 1 11.47631673 -8.744063861 0.837947526 0.993355171 0.857328666 0.16510403 0.071447442 0.479622724 0.665331159 0.03563574 0.014908759 1.80E-09 8.744063861 -0.136026506 LQLERPVSPET(ph)QADLQR ddPTM_HeLa_CUDC101_4h_R1 1 LQLERPVSPETQADLQR 17 1 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 LQLERPVS(0.016)PET(0.984)QADLQR 218.83 2.48E-31 19099000 1797.3 1670.8 1162 1262.1 1337.5 1281.7 791.48 603.53 1533.4 1945.4 TRUE FALSE FALSE 1586.623219 1722.275368 1224.821235 1313.573893 1238.83529 1257.253708 822.0076487 672.2334156 1470.192603 1933.828674 0.820456972 0.890603904 0.63336595 0.679260738 0.640612742 0.65013707 0.425067463 0.347617876 0.760249666 1 10.91724427 -4.740339718 0.241961934 1.01093629 7.08E-16 0.758093167 0.092380204 1.806551854 0.105927744 0.055000856 0.543368356 1.82E-05 4.740339718 -1.01093629 down ETENDDLTNVIQK ddPTM_HeLa_CUDC101_4h_R1 2 ETENDDLTNVIQK 13 0 O95373 O95373 IPO7 Importin-7 0 0 ; ; 222.72 6.09E-32 14164500 2076.38 1633.08 1424.62 1648.57 2474.1 1889 1882.01 1366.09 2195.34 1723.37 FALSE FALSE TRUE 1832.989884 1683.393259 1501.639266 1715.80581 2291.590572 1852.970472 1954.599756 1521.600164 2104.847156 1713.119319 1.069972105 0.982647992 0.876552643 1.001568187 1.337671315 1.081635384 1.140959497 0.888204428 1.228663487 1 10.74240992 LLQPGGGPDVGTGAPRPGCS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 LLQPGGGPDVGTGAPRPGCSPR 22 1 Q9NXH8 Q9NXH8 TOR4A Torsin-4A 1 0 LLQPGGGPDVGT(0.025)GAPRPGCS(0.975)PR 49.141 0.030208 15534000 1822.6 1663.1 2244.7 1513.1 1857.9 1756.1 1582.1 1599.3 3515 776.07 TRUE FALSE FALSE 1608.957591 1714.33814 2366.055272 1574.810758 1720.846418 1722.605318 1643.122127 1781.357847 3370.110212 771.4539011 2.085617285 2.222217215 3.067007981 2.041354326 2.230653596 2.232933576 2.129903193 2.309091761 4.368517947 1 9.59143614 -8.743296021 0.666973353 0.989281396 2.318385865 0 1.078213605 0.273290238 0.232869904 0.188098551 0.065445904 1.81E-09 8.743296021 1.329104469 GLLSQGS(ph)PLSWEETKR ddPTM_HeLa_CUDC101_4h_R1 1 GLLSQGSPLSWEETKR 16 1 A0A0C4DGB2;P48506;D6RGF8;E1CEI4 A0A0C4DGB2 GCLC Glutamate--cysteine ligase catalytic subunit 1 0 GLLS(0.054)QGS(0.686)PLS(0.238)WEET(0.022)KR 71.842 0.015686 29450000 1306.5 1000.1 1204.9 969.64 1299.8 997.37 1089.8 1069.9 1148.9 1299.2 TRUE FALSE FALSE 1153.354051 1030.911896 1270.040539 1009.18611 1203.916344 978.346829 1131.833951 1191.693091 1101.541856 1291.472301 0.893053649 0.798245456 0.983405171 0.781422962 0.932204541 0.757543796 0.876390419 0.922739954 0.852934945 1 10.33480099 -8.742692566 0.543486235 1.00984214 0.860113857 0 0.081285395 0.772352339 0.420780245 0.055933558 0.016814135 1.81E-09 8.742692566 -0.149728283 LCGPES(ph)PPPPYSR ddPTM_HeLa_CUDC101_4h_R1 2 LCGPESPPPPYSR 13 0 O43541-4;O43541 O43541-4 SMAD6 Mothers against decapentaplegic homolog 6 1 0 LCGPES(1)PPPPYSR;LCGPES(1)PPPPYSR ; 113.25 0.00049684 10362000 2497.53 2553.8 2268.2 2302.44 2280.51 2243.93 2207.47 2242.88 2415.19 1531.12 TRUE FALSE FALSE 2204.773319 2632.479551 2390.825753 2396.343455 2112.281321 2201.130774 2292.612857 2498.200393 2315.634846 1522.01283 1.448590495 1.729604047 1.570831537 1.574456803 1.387820969 1.446197253 1.50630324 1.641379326 1.521429255 1 10.57176481 -8.740915196 0.729029584 1.006662987 1.540470523 0.042136848 0.182806108 0.22321232 0.230686264 0.063106816 0.023653439 1.82E-09 8.740915196 0.533807537 GSYSNS(ph)PSNPVNSR ddPTM_HeLa_CUDC101_4h_R1 1 GSYSNSPSNPVNSR 14 0 A0A669KBC7;Q13489 A0A669KBC7 BIRC3 Baculoviral IAP repeat-containing protein 3 1 0 GS(0.146)Y(0.101)S(0.146)NS(0.601)PS(0.007)NPVNSR 84.687 0.02034 30590000 876.52 890.32 883.42 832.04 1010.5 966.2 723.46 809.57 988.6 292.62 TRUE FALSE FALSE 773.7756543 917.7497039 931.1803574 865.9741876 935.9574282 947.7713448 751.3640945 901.7281764 947.8494896 290.8794832 2.66012455 3.15508572 3.201258291 2.977089267 3.217681143 3.258295615 2.583076971 3.100006114 3.258564265 1 8.184277731 -8.740746491 0.584397569 0.905445068 3.095392399 0 0.717421061 0.168096526 0.107427511 0.182760801 0.057734285 1.82E-09 8.740746491 2.189947331 SPDEIILEES(ph)DSEESKK ddPTM_HeLa_CUDC101_4h_R1 1 SPDEIILEESDSEESKK 17 1 A6NHT5 A6NHT5 HMX3 Homeobox protein HMX3 1 0 SPDEIILEES(0.989)DS(0.01)EES(0.001)KK 75.533 0.0098212 6412800 1229.9 969.54 932.31 745.68 860.17 982 892.55 889.14 1521.7 1724.2 TRUE FALSE FALSE 1085.732986 999.4103782 982.7134987 776.0920535 796.7169728 963.2699861 926.9759525 990.3561036 1458.974882 1713.944382 0.633470373 0.58310549 0.573363704 0.452810524 0.464844123 0.562019396 0.54084366 0.577822778 0.851238172 1 10.74310458 -8.739249941 0.485777316 1.0485589 0.514730792 0.865791754 0.059621314 0.20285728 0.086793202 0.050031531 0.014226214 1.82E-09 8.739249941 -0.533828108 AQSNGSGNGSDS(ph)EMDTSSLER ddPTM_HeLa_CUDC101_4h_R1 1 AQSNGSGNGSDSEMDTSSLER 21 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 AQSNGSGNGS(0.054)DS(0.94)EMDT(0.004)S(0.001)SLER 120.32 1.86E-06 7418900 1602.9 1342.4 1346.4 1630.5 1503.3 1415.3 1293.9 1283.4 1458.5 1303.9 TRUE FALSE FALSE 1415.010492 1383.757753 1419.190457 1696.998838 1392.404554 1388.305511 1343.806156 1429.497068 1398.380013 1296.144345 1.091707492 1.06759541 1.094932414 1.309266861 1.074266581 1.071104091 1.036771994 1.102884161 1.078876761 1 10.34001068 -8.735694745 0.650176167 0.999150299 1.109547039 0.086102005 0.074271475 0.889469936 0.719014985 0.050380582 0.017317953 1.84E-09 8.735694745 0.11039674 SSKAS(ph)LGS(ph)LEGEAEAEASSPK ddPTM_HeLa_CUDC101_4h_R1 1 SSKASLGSLEGEAEAEASSPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 S(0.164)S(0.177)KAS(0.751)LGS(0.909)LEGEAEAEASSPK 71.528 0.0048256 41534000 4117.1 3853.8 3452.4 3449.3 3973.4 4277.6 3289 3471.9 3876.4 3196 TRUE FALSE FALSE 3634.499779 3972.53101 3639.047187 3589.977363 3680.290198 4196.011907 3415.857832 3867.127062 3716.613151 3176.99005 1.144007291 1.25040713 1.145438648 1.129993266 1.158420436 1.320750724 1.075186821 1.217229831 1.16985357 1 11.63344486 -8.733814615 0.587074494 0.991394453 1.185276682 0.033769414 0.083139662 0.519129626 0.33610427 0.049980144 0.015957893 1.85E-09 8.733814615 0.193882229 ETGEHLVHVK ddPTM_HeLa_CUDC101_4h_R1 4 ETGEHLVHVK 10 0 P21333-2;P21333;Q60FE5 P21333-2 FLNA Filamin-A 0 0 ;;; ;;; 117.31 0.0042617 84984000 30514.2 24246.6 26651.6 25501 26871.5 25668.5 25227.6 24930.2 29047.7 29749.8 FALSE FALSE TRUE 26937.37173 24993.60901 28092.46611 26541.041 24889.24298 25178.91613 26200.63698 27768.1532 27850.34151 29572.84687 0.910881927 0.845153972 0.949941216 0.897480081 0.841624856 0.851420096 0.885969386 0.938974639 0.94175382 1 14.85198551 -8.742813012 0.52558883 1.009375447 0.882682039 0.373172474 0.039151937 0.560576983 0.283890586 0.033907277 0.009992945 1.81E-09 8.742813012 -0.126693408 ETGEHLVHVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 ETGEHLVHVKK 11 1 P21333-2;P21333;Q60FE5 P21333-2 FLNA Filamin-A 0 1 ; ETGEHLVHVK(1)K;ETGEHLVHVK(1)K 88.056 0.0077714 11011900 7613.8 5287 5899.9 5342.2 11045.2 8327.5 9667.3 9327.1 8794.4 4603.9 FALSE TRUE FALSE 6721.321906 5449.886203 6218.86644 5560.078007 10230.4176 8168.666812 10040.171 10388.85936 8431.89111 4576.515798 1.468654803 1.190837406 1.358864847 1.214915069 2.23541621 1.784909563 2.193846027 2.270036819 1.842425872 1 12.16003395 -1 0.202230707 1.022801048 7.682878796 0.466869779 0.328008302 18.61902874 0.214717352 0.219292918 39.74025884 0.1 1 6.660077747 ETHPDSLR ddPTM_HeLa_CUDC101_4h_R1 2 ETHPDSLR 8 0 P56597 P56597 NME5 Nucleoside diphosphate kinase homolog 5 0 0 ; ; 87.181 0.03056 7736100 4437 1476.39 5131.8 5061.5 3083.8 2461.1 3148.7 1431.66 5320.2 7090.6 FALSE FALSE TRUE 3916.901586 1521.875826 5409.240631 5267.929848 2856.314218 2414.158618 3270.146414 1594.634387 5100.899104 7048.424796 0.555713042 0.215917155 0.767439646 0.747391084 0.405241497 0.342510375 0.463954218 0.226239824 0.723693485 1 12.78308516 -13.52287875 0.141872861 2.974324756 0.261524317 0.399241567 0.190885117 37.07224695 0.36453815 20.3528186 0.491209634 3.00E-14 13.52287875 -2.712800439 ETHVMDYR ddPTM_HeLa_CUDC101_4h_R1 1 ETHVMDYR 8 0 H0YM70;A0A087X1Z3;Q9UL46 H0YM70 PSME2 Proteasome activator complex subunit 2 0 0 82.75 0.035966 16977000 13350 9303.5 9662.9 10194 8898.2 9778.5 8137.4 6830.6 12671 7755 FALSE FALSE TRUE 11785.13324 9590.129808 10185.3056 10609.75538 8241.797514 9591.991405 8451.262244 7608.167894 12148.69602 7708.872915 1.528775136 1.244037866 1.321244456 1.376304357 1.069131325 1.244279353 1.096303226 0.986936479 1.575936736 1 12.91230423 -4.359063205 0.954255118 1.262800112 0.86629125 0.265731371 0.16982095 2.561528226 1.952336258 0.031598174 1.006605568 4.37E-05 4.359063205 -0.396508862 GMSNNT(ph)PQLNR ddPTM_HeLa_CUDC101_4h_R1 1 GMSNNTPQLNR 11 0 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8;F8VWH8;F8W145 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 1 0 GMS(0.001)NNT(0.999)PQLNR 108.32 0.0021596 0 1519.4 1263.9 1204.1 1497 1512.1 1071.2 874.84 527.51 1205.9 1411.6 TRUE FALSE FALSE 1341.298235 1302.839261 1269.197288 1558.054131 1400.555396 1050.768645 908.5828719 587.5596061 1156.192292 1403.20374 0.955882739 0.928474763 0.904499647 1.110354887 0.998112644 0.748835407 0.647506022 0.418727223 0.823966084 1 10.45450878 -4.736636548 1.473092613 0.980351059 0.41311273 0.827462788 0.079936034 0.122550843 0.41648046 0.009360523 0.078439936 1.83E-05 4.736636548 -0.567238329 down ETIEQEK(ac)QAGES ddPTM_HeLa_CUDC101_4h_R1 2 ETIEQEKQAGES 12 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 ; ETIEQEK(1)QAGES;ETIEQEK(1)QAGES 175.49 1.27E-06 3117700 1611.8 1430.86 1596.47 1430.5 2490.2 2168.7 2312.8 2099.58 1965.39 2030.1 FALSE TRUE FALSE 1422.867247 1474.943101 1682.779997 1488.841973 2306.502907 2127.335661 2402.005471 2338.5877 1884.375792 2018.024875 0.705079142 0.730884499 0.833874755 0.737771864 1.142950682 1.054167214 1.190275452 1.158849789 0.933772331 1 10.97872824 -5.750530131 24.99848079 0.836745358 1.134512376 0.734419693 0.092000676 121.0911315 277477.767 0.018268168 0.036252768 1.78E-06 5.750530131 0.297767018 ETIEQEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 ETIEQEKR 8 1 P63313 P63313 TMSB10 Thymosin beta-10 0 1 ; ETIEQEK(1)R;ETIEQEK(1)R 135.71 0.0027266 16911300 7271.2 3342 4793.2 4602.5 4884 4372.7 6063.4 3998.3 7065 8190.8 FALSE TRUE FALSE 6418.880958 3444.963059 5052.334891 4790.209844 4523.71705 4289.298033 6297.267369 4453.45031 6773.77771 8142.080757 0.788358793 0.42310598 0.620521344 0.588327479 0.555597173 0.526806127 0.773422367 0.546967101 0.83194676 1 12.99118182 -7.827970234 1.183166942 0.947310896 0.584254196 0.622300713 0.10254975 0.153511164 0.450266002 0.023582654 0.02134886 1.49E-08 7.827970234 -0.3630567 ETIFELEDEVEQHR ddPTM_HeLa_CUDC101_4h_R1 1 ETIFELEDEVEQHR 14 0 F8WAN1;A0A494C1J1;Q69YQ0-2;Q69YQ0;C9J8U1 F8WAN1 SPECC1L-ADORA2A;SPECC1L Cytospin-A 0 0 135.14 0.00062522 2144100 1448.6 1249.9 1232.5 1107.3 1128.1 1238.7 1293.2 1385.2 1326 1776.1 FALSE FALSE TRUE 1278.797304 1288.407938 1299.132678 1152.46048 1044.88231 1215.073861 1343.079157 1542.885569 1271.341719 1765.535678 0.724311222 0.729754688 0.735829184 0.652754002 0.591821691 0.688218242 0.760720485 0.873890903 0.720088376 1 10.78589026 -9.069653206 0.641967928 1.022786376 0.709421855 0 0.110212329 0.416377158 0.282668219 0.071969177 0.016757586 8.52E-10 9.069653206 -0.313364521 ETIFELEDQVEQHR ddPTM_HeLa_CUDC101_4h_R1 1 ETIFELEDQVEQHR 14 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2;J3KSG2;J3KRN9;J3QQM0 Q5M775-4 SPECC1 Cytospin-B 0 0 175.29 2.39E-07 2774500 2573.7 2214.9 2180.6 2016.4 2112.8 2142.8 2154.7 2233.6 2652.6 2247.9 FALSE FALSE TRUE 2272.014787 2283.138444 2298.489832 2098.637508 1956.942953 2101.92966 2237.807501 2487.863995 2543.258705 2234.529391 1.016775522 1.021753597 1.028623674 0.939185457 0.875774094 0.940658766 1.001467025 1.113372689 1.138163014 1 11.12575531 -6.271043319 24.57848119 1.010791927 0.968292998 0.11625103 0.070094988 970.8673774 2484646.974 0.00910473 0.014022523 5.36E-07 6.271043319 -0.042498929 LIRPEYAWIVQPVSGAVYDRPGAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 LIRPEYAWIVQPVSGAVYDRPGASPK 26 2 G3V198;Q12769 G3V198 NUP160 Nuclear pore complex protein Nup160 1 0 LIRPEYAWIVQPVSGAVY(0.001)DRPGAS(0.999)PK;LIRPEYAWIVQPVS(0.006)GAVY(0.064)DRPGAS(0.93)PK ; 125.95 2.17E-10 471360000 4461.46 3893.22 3825.22 4234.18 3929.43 4378.33 3884.7 3611.79 3613.04 3486.57 TRUE FALSE FALSE 3938.494422 4013.165494 4032.022964 4406.868162 3639.563777 4294.82065 4034.53418 4022.941574 3464.108962 3465.831727 1.136377855 1.157922776 1.163363741 1.271518213 1.050127088 1.239189028 1.164088305 1.160743479 0.999502929 1 11.75898589 -8.733483789 0.513599533 0.985337719 1.178507851 0.605598006 0.054790792 0.543670886 0.263073324 0.049618844 0.014588276 1.85E-09 8.733483789 0.193170131 RPGSVS(ph)STDQER ddPTM_HeLa_CUDC101_4h_R1 1 RPGSVSSTDQER 12 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 RPGSVS(0.657)S(0.291)T(0.051)DQER 86.641 0.013801 5791900 1414.8 1252.1 1169.8 1292.9 1041.5 875.35 964.84 1371.4 1318.5 1578 TRUE FALSE FALSE 1248.959289 1290.675717 1233.042926 1345.63005 964.67062 858.6541572 1002.054202 1527.514633 1264.150872 1568.613986 0.796218381 0.822812833 0.786071613 0.857846521 0.614982799 0.547396724 0.638815037 0.973798937 0.805903099 1 10.61527465 -8.733331541 0.31403695 1.073853641 0.694655833 0.131260216 0.13045468 1.892410188 0.339190169 0.269299025 0.075301133 1.85E-09 8.733331541 -0.379197808 NKDSGSDTASAIIPS(ph)TTPSVDSDDESVVKDK ddPTM_HeLa_CUDC101_4h_R1 1 NKDSGSDTASAIIPSTTPSVDSDDESVVKDK 31 2 Q6WKZ4;E7EX40;Q6WKZ4-2;Q6WKZ4-3 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 0 NKDSGSDTASAIIPS(0.495)T(0.112)T(0.112)PS(0.161)VDS(0.112)DDES(0.009)VVKDK 95.646 1.61E-09 23217000 3002.1 3063.3 2380.7 3008.5 2927.1 2546.8 2378.2 2710.2 2178.7 2080.3 TRUE FALSE FALSE 2650.198389 3157.676642 2509.407843 3131.199634 2711.173665 2498.224033 2469.927971 3018.718213 2088.893064 2067.926283 1.281572951 1.526977372 1.213489989 1.514173721 1.311059145 1.208081765 1.194398461 1.459780379 1.010139037 1 11.01396904 -8.732587483 0.783629561 1.010140582 1.336023475 0.553535657 0.118895923 0.357754637 0.432181474 0.062581094 0.02508524 1.85E-09 8.732587483 0.325882893 ETLVYLTHLDYVDTER ddPTM_HeLa_CUDC101_4h_R1 3 ETLVYLTHLDYVDTER 16 0 O14980 O14980 XPO1 Exportin-1 0 0 ;; ;; 182.37 1.09E-10 21362600 10150.8 7693.6 8164.4 8143.4 8683.3 8939.5 8283.3 7222.8 8982.3 10332.3 FALSE FALSE TRUE 8960.938612 7930.630697 8605.79216 8475.523051 8042.750259 8768.993932 8602.789656 8045.014356 8612.045792 10270.84302 0.872463788 0.772149928 0.837885668 0.825202277 0.783066224 0.85377548 0.837593335 0.783286663 0.83849454 1 13.32626698 -8.422536464 0.619004527 0.998482788 0.812921213 0.173099398 0.056155099 0.199069686 0.160918692 0.017269166 0.007830291 3.78E-09 8.422536464 -0.185561575 ETMQIDER ddPTM_HeLa_CUDC101_4h_R1 1 ETMQIDER 8 0 O95391 O95391 SLU7 Pre-mRNA-splicing factor SLU7 0 0 110.81 0.0030118 0 1512.9 1342 1355 1560.4 1882.3 2042.5 1613.9 1570.3 1728.2 1393.4 FALSE FALSE TRUE 1335.560155 1383.345429 1428.255399 1624.039857 1743.446479 2003.542716 1676.148664 1749.056605 1656.962865 1385.111995 0.964225391 0.998724605 1.031147953 1.172497143 1.25870434 1.446484272 1.210117788 1.262754645 1.196266346 1 10.43578692 -6.101422705 1.80581436 0.983888061 1.302380635 0.633690171 0.088237587 0.086464965 0.554594213 0.008974615 0.017171691 7.92E-07 6.101422705 0.318492574 ETMQSLNDR ddPTM_HeLa_CUDC101_4h_R1 4 ETMQSLNDR 9 0 P05783;F8VZY9;CON__Q92764;C4AM86;CON__Q497I4;Q92764 P05783 KRT18;KRT35 "Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5" 0 0 ;;; ;;; 179.51 1.94E-07 680190000 6811.1 5539.5 5897.27 5857.86 5728.4 5814.1 5105.88 4189.32 6556.56 6974.6 FALSE FALSE TRUE 6012.713183 5710.165429 6216.094254 6096.768851 5305.827345 5703.205729 5302.815502 4666.215255 6286.295822 6933.114769 0.867245586 0.823607515 0.896580319 0.879369382 0.765287684 0.822603681 0.76485327 0.673033032 0.906705865 1 12.75928793 -1.325083344 0.072248447 1.20088499 1.82E-17 0.716578775 0.046172903 59.857961 0.341798538 1.036149054 7.372639707 0.047306047 1.325083344 -1.20088499 QGSIT(ph)SPQANEQSVT(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 1 QGSITSPQANEQSVTPQR 18 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QGS(0.384)IT(0.584)S(0.032)PQANEQS(0.334)VT(0.666)PQR 133.24 0.0011021 12971000 1285.2 848.62 1027.9 806.56 1005.7 991.82 1118 918.15 1160.4 1773.9 TRUE FALSE FALSE 1134.550804 874.7649763 1083.471383 839.455003 931.5115146 972.902686 1161.121635 1022.668485 1112.567821 1763.348764 0.643406924 0.496081657 0.614439642 0.476057273 0.528262777 0.551735826 0.658475316 0.579958149 0.630940313 1 10.78410213 -8.73219754 0.61831531 1.012412788 0.55455308 0.226800262 0.123509113 0.190505099 0.138217955 0.044040186 0.014623261 1.85E-09 8.73219754 -0.457859708 RPGTQGHLGPEKEEEES(ph)DGEPEDSSTS ddPTM_HeLa_CUDC101_4h_R1 1 RPGTQGHLGPEKEEEESDGEPEDSSTS 27 2 H7C1Q8;Q8IYB7 H7C1Q8 DIS3L2 DIS3-like exonuclease 2 1 0 RPGTQGHLGPEKEEEES(0.364)DGEPEDS(0.104)S(0.183)T(0.183)S(0.165) 54.306 0.0094989 26643000 877.54 731.7 717.51 621.84 872.45 567.23 845.49 808.2 689.99 892.76 TRUE FALSE FALSE 774.6760915 754.2428097 756.3007609 647.201323 808.0911017 556.4110328 878.1008325 900.2022211 661.5483202 887.4498238 0.872923821 0.849899104 0.852218053 0.729282158 0.910576666 0.626977456 0.98946533 1.014369711 0.745448703 1 9.793521742 -8.730340862 0.701681812 0.998689304 0.847728006 0 0.132417686 0.822978725 0.786043595 0.064979076 0.023864474 1.86E-09 8.730340862 -0.150961298 PLPS(ph)PGAAGAQALEK ddPTM_HeLa_CUDC101_4h_R1 1 PLPSPGAAGAQALEK 15 0 H9KVB4;O15417-2;O15417;O15417-3 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 PLPS(1)PGAAGAQALEK 97.823 0.0067835 10281000 2308.3 1943 1711.9 1990.2 1781.3 2031.5 1687 2298.5 1948.1 2433.9 TRUE FALSE FALSE 2037.724573 2002.861527 1804.450492 2071.368958 1649.897048 1992.752522 1752.068155 2560.151949 1867.798493 2419.423055 0.842235743 0.82782609 0.745818508 0.856141696 0.681938219 0.823647819 0.724167752 1.058166303 0.77200161 1 11.24044734 -8.725945329 0.647262436 1.002272397 0.806931454 0 0.118574808 0.612617369 0.492187238 0.061168953 0.021168329 1.88E-09 8.725945329 -0.195340944 MALLQEFASRPLGAAPQAEHQGLPVPGS(ph)PGGQK ddPTM_HeLa_CUDC101_4h_R1 1 MALLQEFASRPLGAAPQAEHQGLPVPGSPGGQK 33 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 MALLQEFASRPLGAAPQAEHQGLPVPGS(1)PGGQK 78.3 7.38E-07 20831000 1716.9 1766.5 1362.3 1276.6 1842.5 1717.8 1290.7 1309.9 1273.3 1392.1 TRUE FALSE FALSE 1515.647585 1820.923771 1435.950059 1328.665266 1706.582446 1685.035827 1340.482731 1459.013721 1220.814035 1383.819727 1.095263751 1.315867765 1.037671331 0.960143319 1.233240437 1.217670043 0.968683062 1.054337998 0.882205977 1 10.4344403 -8.724542038 1.048752549 1.009494553 1.109905324 0.206551039 0.117130433 0.764999253 1.685081356 0.04331979 0.021675294 1.89E-09 8.724542038 0.100410772 TPHVQAVQGPLGS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 3 TPHVQAVQGPLGSPPK 16 0 Q15149 Q15149 PLEC Plectin 1 0 TPHVQAVQGPLGS(1)PPK;TPHVQAVQGPLGS(1)PPK;TPHVQAVQGPLGS(1)PPK ;; 134.93 0.00041286 721399000 11464.8 9372 9295.1 9548.6 10292.6 9778.3 9459 10734.2 10632.7 10921.2 TRUE FALSE FALSE 10120.91352 9660.740211 9797.621222 9938.033181 9533.335404 9591.795219 9823.836799 11956.13794 10194.41561 10856.24022 0.93226691 0.889879002 0.902487512 0.915421268 0.878143373 0.883528278 0.904902305 1.101314792 0.939037402 1 13.40623693 -8.723273913 0.838680779 0.996197463 0.920362851 0.035018914 0.063793265 0.707778054 0.987870212 0.029100503 0.012423555 1.89E-09 8.723273913 -0.075834612 ENVEYIEREESDGEY(ph)DEFGRK ddPTM_HeLa_CUDC101_4h_R1 1 ENVEYIEREESDGEYDEFGRK 21 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 ENVEY(0.014)IEREES(0.328)DGEY(0.658)DEFGRK 58.49 0.019823 9903300 736.32 541.54 588.76 573.86 561.73 700.49 740.67 604.93 593.77 751.18 TRUE FALSE FALSE 650.0096858 558.2242055 620.5901465 597.2644912 520.292297 687.1293203 769.23789 673.792786 569.2945493 746.711948 0.870495895 0.747576367 0.831097116 0.799859294 0.696777785 0.920206677 1.030166843 0.90234633 0.762401822 1 9.544408005 -8.722431618 0.920096076 0.990112137 0.849403806 0 0.113390478 0.548807759 0.927397717 0.042545275 0.019501182 1.89E-09 8.722431618 -0.140708331 ETNLDSLPLVDTHSK ddPTM_HeLa_CUDC101_4h_R1 1 ETNLDSLPLVDTHSK 15 0 P08670 P08670 VIM Vimentin 0 0 145.46 0.00029482 30519000 2597.5 2293 2199.4 2019.7 2353.3 2559.5 2076 1973.9 2423.8 2797.4 FALSE FALSE TRUE 2293.024988 2363.644612 2318.306217 2102.072096 2179.701747 2510.681802 2156.072015 2198.600797 2323.889938 2780.76094 0.824603422 0.849999213 0.833694901 0.755934128 0.783850821 0.902875816 0.775353244 0.790647181 0.835702884 1 11.44126401 -9.291950101 0.458062193 1.050744584 0.804846982 0.107961241 0.064445827 0.686407693 0.188964388 0.079150332 0.0115459 5.11E-10 9.291950101 -0.245897602 ETNLDSLPLVDTHSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 ETNLDSLPLVDTHSKR 16 1 P08670 P08670 VIM Vimentin 0 1 ; ETNLDSLPLVDTHSK(1)R;ETNLDSLPLVDTHSK(1)R 164.82 8.42E-05 15939300 3789.5 3135.6 3196.6 2240 5325 4472.1 5136.1 5813.1 4975.1 3711.3 FALSE TRUE FALSE 3345.300555 3232.204119 3369.417865 2331.356882 4932.185359 4386.802144 5334.201097 6474.839807 4770.024272 3689.225023 0.906775958 0.876120079 0.913313188 0.631936753 1.336916379 1.189085002 1.44588662 1.755067736 1.292961054 1 11.84910207 -4.667183138 0.97276274 0.931545414 1.891080153 0.650253123 0.186014703 0.391112983 0.421872304 0.022522881 0.337002456 2.15E-05 4.667183138 0.95953474 ETNLDSLPLVDTHSKR ddPTM_HeLa_CUDC101_4h_R1 2 ETNLDSLPLVDTHSKR 16 1 P08670 P08670 VIM Vimentin 0 0 ; ; 89.911 0.006105 39981000 6675.9 7893 7240.5 7514.3 10159.4 8381 7872 9962.3 8161.3 5486.8 FALSE FALSE TRUE 5893.361122 8136.173974 7631.943331 7820.765634 9409.961302 8221.146389 8175.625677 11096.36796 7824.88776 5454.16427 1.08052505 1.491736144 1.399287398 1.43390724 1.725280141 1.507315508 1.498969461 2.034476304 1.434663016 1 12.41314244 -6.594211003 0.468385624 0.97945074 1.776602611 0.440867318 0.206921622 0.344887839 0.160437712 0.051188127 0.110006216 2.55E-07 6.594211003 0.797151871 LKNDSDLFGLGLEEAGPKES(ph)SEEGKEGK ddPTM_HeLa_CUDC101_4h_R1 2 LKNDSDLFGLGLEEAGPKESSEEGKEGK 28 3 Q3YEC7-2;Q3YEC7 Q3YEC7-2 RABL6 Rab-like protein 6 1 0 LKNDSDLFGLGLEEAGPKES(0.716)S(0.284)EEGKEGK;LKNDSDLFGLGLEEAGPKES(0.5)S(0.5)EEGKEGK ; 68.445 4.23E-05 112764000 5377.7 4237.5 4396 4865.7 4722.6 4632.9 4104.3 4435.8 5075.8 5284.4 TRUE FALSE FALSE 4747.334158 4368.052352 4633.661057 5064.144277 4374.223207 4544.535151 4262.604226 4940.753542 4866.573376 5252.968154 0.903743183 0.83153985 0.882103398 0.96405387 0.832714587 0.865136627 0.811465842 0.940564153 0.926442581 1 12.35891712 -8.721726641 0.526596484 1.010179893 0.870561277 0.258859319 0.050837555 0.625024263 0.321095101 0.041570921 0.012550614 1.90E-09 8.721726641 -0.139618616 KEEENADS(ph)DDEGELQDLLSQDWR ddPTM_HeLa_CUDC101_4h_R1 2 KEEENADSDDEGELQDLLSQDWR 23 1 Q96NB3;J3QQQ3 Q96NB3 ZNF830 Zinc finger protein 830 1 0 KEEENADS(1)DDEGELQDLLSQDWR;KEEENADS(1)DDEGELQDLLSQDWR ; 130.51 7.10E-08 82786000 8896.2 7778.5 7150.4 7479.2 8207.9 7703.6 7614.8 7232.1 8847.5 8295.8 TRUE FALSE FALSE 7853.400922 8018.146365 7536.972253 7784.234104 7602.419569 7556.666665 7908.505387 8055.373031 8482.802305 8246.456213 0.952336461 0.972314187 0.913964988 0.943949001 0.921901405 0.916353215 0.95901866 0.976828449 1.028660322 1 13.00955856 -8.721107697 0.534241236 1.003619807 0.940021641 0.585188108 0.022789713 0.627266722 0.332577001 0.019107059 0.00582049 1.90E-09 8.721107697 -0.063598166 RSTAPSAAASASASAAAS(ph)SPAGGGAEALELLEHCGVCR ddPTM_HeLa_CUDC101_4h_R1 1 RSTAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 38 1 Q13263-2;Q13263 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 1 0 RSTAPSAAASASAS(0.002)AAAS(0.499)S(0.499)PAGGGAEALELLEHCGVCR 77.643 2.09E-07 16164000 774.07 597.21 568.63 667.18 898.15 769.84 695.37 1011.2 845.96 121.62 TRUE FALSE FALSE 683.334688 615.6093322 599.3718578 694.3904842 831.8952639 755.1565846 722.1906538 1126.310921 811.0891707 120.8965988 5.652224253 5.092031854 4.957723076 5.743672617 6.881047704 6.246301318 5.97362259 9.316316021 6.708949454 1 6.917629848 -8.720894319 0.323323149 1.72E-29 7.127141944 0.065050638 1.905755402 0.763260105 0.145394914 2.073519812 0.582141639 1.90E-09 8.720894319 7.127141944 LEPTNVQTVTCS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 LEPTNVQTVTCSPR 14 0 J3QR52;J3QLN7;Q99741;J3KTI7 J3QR52 CDC6 Cell division control protein 6 homolog 1 0 LEPTNVQTVT(0.003)CS(0.997)PR;LEPTNVQTVT(0.084)CS(0.916)PR ; 165.89 1.48E-05 210320000 5757.5 5410.3 5661.4 5800.5 7708.9 5618.3 4792.6 3063.6 3988 2716.6 TRUE FALSE FALSE 5082.614578 5576.98493 5967.472409 6037.069462 7140.229805 5511.140288 4977.452187 3412.347841 3823.612952 2700.441542 1.882142049 2.065212241 2.209813586 2.235586058 2.644097157 2.040829324 1.843199384 1.263625887 1.415921394 1 11.3989796 -8.720799922 0.686481027 1.004023809 2.070013797 0.450221941 0.351420464 0.400816174 0.366346722 0.221622291 0.080758532 1.90E-09 8.720799922 1.065989988 IDIS(ph)PSTLR ddPTM_HeLa_CUDC101_4h_R1 6 IDISPSTLR 9 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 IDIS(0.63)PS(0.369)T(0.001)LR;IDIS(0.683)PS(0.316)T(0.001)LR;IDIS(0.896)PS(0.103)T(0.001)LR;IDIS(0.898)PS(0.101)TLR;IDIS(0.911)PS(0.089)TLR;IDIS(0.889)PS(0.11)T(0.001)LR ;;;;; 124.67 0.0045737 7916686900 17324.7 14974.9 13385.9 12608.95 15900.1 15049.9 14288.4 13496.6 15872.5 18423.2 TRUE FALSE FALSE 15293.92493 15436.25892 14109.58224 13123.19748 14727.1813 14762.84823 14839.50837 15032.99839 15218.22883 18313.61799 0.835112152 0.842884182 0.770442097 0.716581371 0.804165584 0.806113147 0.810299111 0.820864474 0.830978829 1 14.16062921 -8.719252331 0.540767668 1.012846763 0.788934437 0.233682821 0.059900491 0.288521395 0.157196666 0.031074687 0.009553731 1.91E-09 8.719252331 -0.223912326 NFSCGS(ph)VEFDEADLESLR ddPTM_HeLa_CUDC101_4h_R1 1 NFSCGSVEFDEADLESLR 18 0 Q86SQ0-2;Q86SQ0-3;Q86SQ0;G5E9V3;E9PFQ4;E9PDY7;A0A1W2PQ63 Q86SQ0-2 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 NFSCGS(1)VEFDEADLESLR 237.09 1.22E-70 0 811.25 878.67 877.87 716.22 867.03 827.63 633.95 687.52 796.31 331.36 TRUE FALSE FALSE 716.1565048 905.7407812 925.3303076 745.4305474 803.0709243 811.8443367 658.4016639 765.7844977 763.4857648 329.389056 2.174196415 2.749759789 2.809232094 2.263070171 2.43806195 2.46469736 1.998857132 2.324863209 2.317884431 1 8.363648812 -8.717289885 0.738641382 1.027774763 2.421125127 0.093800882 0.4550954 0.205382568 0.219791038 0.150906854 0.058535513 1.92E-09 8.717289885 1.393350364 SETELK(ac)DTYAR ddPTM_HeLa_CUDC101_4h_R1 1 SETELKDTYAR 11 1 Q13200;Q13200-2;Q13200-3;H7C1H2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 1 SETELK(1)DTYAR 117.14 0.0028765 1984200 797.83 354.9 369.15 278.02 602.38 929.22 1440.9 1741.8 528.48 422.19 FALSE TRUE FALSE 704.3095768 365.8340483 389.1073656 289.3588573 557.9436275 911.4966767 1496.475996 1940.079471 506.6958307 419.6787951 1.678211015 0.871700102 0.927155172 0.689476954 1.32945394 2.171891188 3.565765088 4.622772211 1.207341988 1 8.713141761 -4.722940071 1.649742796 1.210233128 4.729722544 0.949175733 0.278931684 0.096390068 0.433336206 0.053513935 0.40808891 1.89E-05 4.722940071 3.519489416 up VVS(ph)ETNDTK ddPTM_HeLa_CUDC101_4h_R1 2 VVSETNDTK 9 0 P05783 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 VVS(0.986)ET(0.012)NDT(0.002)K;VVS(0.996)ET(0.004)NDTK ; 108.98 0.010728 38638000 7550.8 5555.2 6979.7 6253.5 6265 5790.9 6482.1 6316.7 7225.6 7688.5 TRUE FALSE FALSE 6665.70667 5726.349127 7357.043694 6508.54476 5802.843432 5680.448231 6732.116768 7035.767595 6927.75771 7642.76846 0.872158656 0.749250636 0.962615017 0.851595177 0.759259352 0.743244841 0.880847929 0.920578405 0.906446106 1 12.89987961 -8.71529477 0.577995271 1.007894537 0.833720665 0.222074522 0.075070779 0.668641442 0.4217904 0.057318987 0.01846944 1.93E-09 8.71529477 -0.174173873 EYVSNDAAQS(ph)DDEEK ddPTM_HeLa_CUDC101_4h_R1 1 EYVSNDAAQSDDEEK 15 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 EYVSNDAAQS(1)DDEEK 219.97 2.08E-32 4899600 1801.7 1489.6 1326.9 1502.5 1230.6 1269.7 1441 1179.3 1516.2 2173.7 TRUE FALSE FALSE 1590.507457 1535.49281 1398.636228 1563.778444 1139.82109 1245.482588 1496.579853 1313.546745 1453.701594 2160.770736 0.736083394 0.710622735 0.647285806 0.723713265 0.527506723 0.576406635 0.692613903 0.607906579 0.672769938 1 11.07733029 -8.714660202 0.347161406 1.086158267 0.597449621 0.132407539 0.11329928 0.491981673 0.107509213 0.094962093 0.026430398 1.93E-09 8.714660202 -0.488708646 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(ph)PVAPAPVPSRR ddPTM_HeLa_CUDC101_4h_R1 2 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSRR 43 2 Q9UK76-3;Q9UK76 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GEGDIHENVDT(0.002)DLPGS(0.013)LGQS(0.012)EEKPVPAAPVPS(0.907)PVAPAPVPS(0.065)RR;GEGDIHENVDTDLPGS(0.009)LGQS(0.009)EEKPVPAAPVPS(0.953)PVAPAPVPS(0.028)RR ; 51.729 0.0019305 30266000 2116.17 2040 1832.52 1858.08 2686 2350.84 1692.8 2372.12 2391.07 1353.89 TRUE FALSE FALSE 1868.115761 2102.849982 1931.591574 1933.860534 2487.859131 2306.001644 1758.091863 2642.152552 2292.509083 1345.837002 1.388069846 1.562484891 1.435234409 1.436920319 1.848559021 1.713433083 1.306318566 1.963203975 1.703407678 1 10.39428798 -8.71100166 0.215118555 0.676975995 1.799001043 0 0.281574905 2.242662112 0.218280835 0.787040456 0.272103487 1.95E-09 8.71100166 1.122025048 SPS(ph)PEPIYNSEGK ddPTM_HeLa_CUDC101_4h_R1 1 SPSPEPIYNSEGK 13 0 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637;Q15637-7;Q15637-5 Q15637-6 SF1 Splicing factor 1 1 0 S(0.026)PS(0.565)PEPIY(0.375)NS(0.034)EGK 79.07 0.033122 38887000 1742.9 1196.6 1294.1 1129.4 1441.8 1638.4 1731.2 1313 1837.4 2079.8 TRUE FALSE FALSE 1538.599904 1233.465828 1364.06296 1175.461814 1335.441286 1607.15025 1797.972964 1462.466613 1761.661594 2067.429257 0.744209215 0.596618154 0.659787006 0.568562049 0.645942918 0.777366502 0.869666015 0.707384114 0.852102479 1 11.01362225 -8.710266198 0.79928839 0.988147699 0.694522173 0.47247108 0.093195003 0.310007526 0.392499171 0.048678863 0.020254766 1.95E-09 8.710266198 -0.293625525 REEGPPPPSPDGAS(ph)SDAEPEPPSGR ddPTM_HeLa_CUDC101_4h_R1 1 REEGPPPPSPDGASSDAEPEPPSGR 25 1 Q9NTJ3;C9JWF0;C9IYK2;C9JJ64;C9JR83;E9PD53;Q9NTJ3-2;F8WCB7 Q9NTJ3 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 0 REEGPPPPSPDGAS(0.59)S(0.406)DAEPEPPS(0.004)GR 121.23 4.02E-10 18151000 1872 1593.1 1440.5 1322.1 1652.2 1529.6 1706.6 1213.1 1780.9 2095.8 TRUE FALSE FALSE 1652.566998 1642.181523 1518.377787 1376.020953 1530.320498 1500.425428 1772.424134 1351.1944 1707.490548 2083.334088 0.793231871 0.788246845 0.728821074 0.660489818 0.734553573 0.720203945 0.850763276 0.648573077 0.819595166 1 11.0246785 -8.70971483 0.486799499 1.025715623 0.724315924 0.389535146 0.076043995 0.394010086 0.171916164 0.054751183 0.016094889 1.95E-09 8.70971483 -0.301399698 VVPGQFDDADS(ph)SDSENR ddPTM_HeLa_CUDC101_4h_R1 2 VVPGQFDDADSSDSENR 17 0 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 0 VVPGQFDDADS(0.535)S(0.233)DS(0.233)ENR;VVPGQFDDADS(0.667)S(0.328)DS(0.006)ENR ; 176.17 2.24E-07 61160300 3928 3021.4 3022.8 3006.7 2957.9 2859 2773.1 2388.8 3442.5 4649.2 TRUE FALSE FALSE 3467.565794 3114.485753 3186.221711 3129.326222 2739.70161 2804.469338 2880.059396 2660.731336 3300.598693 4621.546352 0.750304234 0.673905554 0.689427622 0.677116702 0.592810588 0.606824886 0.623180896 0.575723174 0.714176261 1 12.17415994 -8.70899303 0.276431372 1.133652487 0.561776155 0.376938941 0.091588557 0.287756844 0.041817048 0.058106 0.0174898 1.95E-09 8.70899303 -0.571876333 VVPEDGS(ph)PEKR ddPTM_HeLa_CUDC101_4h_R1 4 VVPEDGSPEKR 11 1 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A 1 0 VVPEDGS(1)PEKR;VVPEDGS(1)PEKR;VVPEDGS(1)PEKR;VVPEDGS(1)PEKR ;;; 202 2.81E-16 427442000 18842.3 16781.9 17933.5 17079.4 17024.8 16541.8 15260.3 16694 16055.6 14362.7 TRUE FALSE FALSE 16633.63416 17298.93045 18903.03926 17775.97176 15768.91442 16226.29273 15848.89488 18594.37748 15393.78137 14277.27002 1.165043046 1.211641331 1.32399536 1.245053972 1.104476864 1.136512281 1.110078808 1.302376256 1.07820202 1 13.80143253 -8.707414755 0.767796376 1.006095621 1.198323992 0.418238585 0.074307044 0.399428432 0.465150453 0.040695035 0.01644334 1.96E-09 8.707414755 0.192228372 KGNAEGSS(ph)DEEGKLVIDEPAK ddPTM_HeLa_CUDC101_4h_R1 1 KGNAEGSSDEEGKLVIDEPAK 21 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 KGNAEGS(0.175)S(0.825)DEEGKLVIDEPAK 45.099 0.032748 24626000 4877.2 3964.9 3771.5 3878.7 3201.5 3744.5 3707.1 3530.8 4490.5 5963.3 TRUE FALSE FALSE 4305.502009 4087.053869 3975.398698 4036.890151 2965.331723 3673.079901 3850.084089 3932.732 4305.399689 5927.830026 0.726320085 0.689468802 0.670633045 0.681006394 0.500238993 0.619633135 0.649492997 0.663435352 0.726302824 1 12.53328837 -8.70660074 0.401347264 1.062325472 0.607459798 0.352733856 0.096015728 0.36357342 0.106205254 0.070025062 0.019578622 1.97E-09 8.70660074 -0.454865675 S(ph)ASPHDVDLCLVSPCEFEHRK ddPTM_HeLa_CUDC101_4h_R1 2 SASPHDVDLCLVSPCEFEHRK 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 S(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK;S(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK ; 87.388 0.0013236 42501000 4798.8 3546.2 3403.1 3618.8 6065.4 4594.9 5181.2 5244.9 4672.9 819.25 TRUE FALSE FALSE 4236.291939 3655.454219 3587.08188 3766.390306 5617.967526 4507.259938 5381.04062 5841.958215 4480.281084 814.3770646 5.201880214 4.488650746 4.404694135 4.624872764 6.898484462 5.534610605 6.607554232 7.173529891 5.501482396 1 9.669553121 -8.701341708 0.300721847 8.22E-27 6.597814751 0.23222094 1.46729164 0.806123791 0.136267237 1.9593567 0.57388444 1.99E-09 8.701341708 6.597814751 KPDS(ph)PPKVLEPENK ddPTM_HeLa_CUDC101_4h_R1 1 KPDSPPKVLEPENK 14 2 Q96T23-3;Q96T23-2;Q96T23;H0YCN2 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 KPDS(1)PPKVLEPENK 59.116 0.031447 45747000 7329 5821.1 5565.8 6345.5 6336.8 5533.9 5555.3 5753 5783.1 7962.9 TRUE FALSE FALSE 6469.90573 6000.441191 5866.703984 6604.296918 5869.346889 5428.350078 5769.569782 6407.898266 5544.71817 7915.536317 0.817367955 0.758058703 0.741163169 0.834346108 0.741497058 0.685784243 0.728891834 0.809534314 0.700485469 1 12.95047139 -8.700966818 0.436060993 1.03453889 0.740514381 0 0.10102954 0.392540443 0.136390703 0.050736759 0.014486347 1.99E-09 8.700966818 -0.294024509 RGES(ph)LDNLDSPR ddPTM_HeLa_CUDC101_4h_R1 8 RGESLDNLDSPR 12 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 RGES(1)LDNLDSPR;RGES(1)LDNLDSPR;RGES(1)LDNLDSPR;RGES(1)LDNLDSPR;RGES(1)LDNLDSPR;RGES(1)LDNLDSPR;RGES(0.999)LDNLDS(0.001)PR;RGES(0.96)LDNLDS(0.04)PR ;;;;;;; 152.94 0.00083524 744337800 12272.49 10131.26 9190.06 8929.63 10665.39 11055.34 10137.24 11896.43 11341.34 12679.02 TRUE FALSE FALSE 10833.92733 10443.39211 9686.902442 9293.818909 9878.625428 10844.47781 10528.23674 13250.6715 10873.84516 12603.60463 0.85958959 0.828603596 0.768581904 0.737393721 0.783793662 0.86042669 0.835335371 1.051339827 0.862756766 1 13.62154878 -8.700282914 0.782892723 0.993718122 0.832394898 0.070229749 0.089936341 0.500294983 0.607981304 0.042840411 0.017702128 1.99E-09 8.700282914 -0.161323223 AEGEWEDQEALDYFS(ph)DKESGK ddPTM_HeLa_CUDC101_4h_R1 4 AEGEWEDQEALDYFSDKESGK 21 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEWEDQEALDYFS(0.929)DKES(0.071)GK;AEGEWEDQEALDY(0.003)FS(0.979)DKES(0.018)GK;AEGEWEDQEALDY(0.437)FS(0.521)DKES(0.043)GK;AEGEWEDQEALDY(0.371)FS(0.628)DKES(0.001)GK ;;; 101.76 9.85E-05 981180000 20193.7 17202.2 16914.1 16173.2 18432.5 18655.5 16649 16312.8 19279.4 18949.2 TRUE FALSE FALSE 17826.6251 17732.17939 17828.52741 16832.813 17072.7712 18299.67742 17291.15751 18169.78321 18484.69497 18836.48932 0.946387875 0.941373899 0.946488866 0.893627932 0.906366941 0.971501489 0.917960731 0.964605607 0.981323784 1 14.20124248 -8.699602316 0.574869248 1.002668941 0.932022845 0.465415773 0.023434077 0.523894833 0.32882635 0.018128557 0.005918651 2.00E-09 8.699602316 -0.070646096 VVLGDGVQLPPGDY(ph)STTPGGTLFSTT(ph)PGGTR ddPTM_HeLa_CUDC101_4h_R1 1 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 VVLGDGVQLPPGDY(0.391)S(0.229)T(0.257)T(0.123)PGGT(0.056)LFS(0.1)T(0.234)T(0.557)PGGT(0.053)R 72.107 4.47E-05 9473100 1908.8 1391.5 1580.5 1477.7 1757.2 1728.2 1617.5 1385.3 1990.1 2039.1 TRUE FALSE FALSE 1685.053358 1434.370466 1665.946611 1537.966993 1627.574857 1695.237464 1679.887517 1542.996952 1908.067236 2026.971343 0.831315827 0.707642203 0.821889573 0.758751227 0.802958987 0.836340124 0.828767275 0.761232742 0.941339029 1 10.98510998 -8.698212265 0.725775077 0.996547508 0.792043244 0.733775268 0.042203686 0.219837515 0.227888914 0.023474567 0.009149128 2.00E-09 8.698212265 -0.204504264 VDDSPST(ph)SGGSSDGDQR ddPTM_HeLa_CUDC101_4h_R1 1 VDDSPSTSGGSSDGDQR 17 0 F8WF15;F8W8F0;C9J180;Q96LR5 F8WF15 UBE2E2 Ubiquitin-conjugating enzyme E2 E2 1 0 VDDS(0.068)PS(0.23)T(0.436)S(0.127)GGS(0.07)S(0.07)DGDQR 109.14 0.0055961 7913800 2869.8 2630.5 2370 2233.4 2117.1 2309.1 2046.6 1740.9 2919.3 3156.5 TRUE FALSE FALSE 2533.406394 2711.542587 2498.129369 2324.487706 1960.925751 2265.057765 2125.538048 1939.077019 2798.965218 3137.724998 0.807402305 0.864174709 0.796159437 0.74081945 0.624951438 0.721878994 0.677413747 0.617988199 0.892036498 1 11.6155032 -8.696089701 0.055168594 1.782105859 1.41E-09 0.807076134 0.050929522 16.52973602 0.322449573 6.047758384 4.342391622 2.01E-09 8.696089701 -1.782105857 LREVIEIEDAS(ph)PTKCPITTK ddPTM_HeLa_CUDC101_4h_R1 2 LREVIEIEDASPTKCPITTK 20 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LREVIEIEDAS(0.854)PT(0.112)KCPIT(0.025)T(0.008)K;LREVIEIEDAS(0.94)PT(0.038)KCPIT(0.015)T(0.006)K ; 91.889 0.0013769 144941000 4119.4 3656.6 3685.9 3706.7 4578.8 3940.2 3496.3 3478.9 4056.1 2804.4 TRUE FALSE FALSE 3636.530177 3769.255512 3885.170903 3857.875248 4241.031046 3865.04725 3631.153462 3874.923914 3888.905841 2787.719304 1.304482188 1.352092912 1.393673638 1.383882245 1.521326426 1.386454958 1.302553473 1.389997877 1.39501342 1 11.44486959 -8.694381052 0.511081888 0.969326809 1.403927512 0 0.131045016 0.261732467 0.127727611 0.053371506 0.016332417 2.02E-09 8.694381052 0.434600703 ETTDTDTADQVIASFK ddPTM_HeLa_CUDC101_4h_R1 2 ETTDTDTADQVIASFK 16 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 179.46 5.20E-07 25238000 5488.4 5689.1 4574.7 4885.9 5137.2 4888.8 4511.5 5315.5 5462.3 5435.4 FALSE FALSE TRUE 4845.058072 5864.374428 4822.02212 5085.168121 4758.238991 4795.554285 4685.510066 5920.595034 5237.141682 5403.069999 0.896723173 1.085378207 0.89245968 0.941162732 0.8806547 0.887561014 0.867194034 1.095783515 0.969289993 1 12.39956366 ETSFGS(ph)SENITMTSLSK ddPTM_HeLa_CUDC101_4h_R1 5 ETSFGSSENITMTSLSK 17 0 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;A0A087WZS7 Q9UMZ2-6 SYNRG Synergin gamma 1 0 ETSFGS(0.681)S(0.319)ENITMTSLSK;ETS(0.001)FGS(0.5)S(0.5)ENITMTSLSK;ET(0.021)S(0.033)FGS(0.93)S(0.015)ENIT(0.001)MTSLSK;ET(0.003)S(0.021)FGS(0.95)S(0.026)ENIT(0.001)MTSLSK;ETS(0.004)FGS(0.744)S(0.124)ENIT(0.091)MT(0.035)S(0.001)LSK ;;;; 310.3 3.85E-144 132872400 14054.28 11781.83 10935.41 11035.73 14770.05 12523.05 12050.82 11278.08 13482.62 12983.57 TRUE FALSE FALSE 12406.8586 12144.81422 11526.61134 11485.81477 13680.49284 12284.19369 12515.62416 12561.93104 12926.8607 12906.34315 0.961299298 0.940995763 0.893096612 0.889935642 1.05998211 0.951795063 0.969726593 0.973314509 1.001589726 1 13.65579267 -8.692789653 0.973204448 0.996383865 0.954899357 0.140181924 0.044700533 0.818849543 1.556717187 0.018673963 0.009133592 2.03E-09 8.692789653 -0.041484507 ETVDQVEELRR ddPTM_HeLa_CUDC101_4h_R1 2 ETVDQVEELRR 11 1 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2;A0A2R8Y5T0 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 147.62 0.0009146 8843500 6548.6 4620.6 5548.4 5224.5 5758.9 5531.4 4645.2 4949.5 4615.8 5530.8 FALSE FALSE TRUE 5780.983035 4762.955209 5848.363287 5437.577692 5334.07742 5425.897761 4824.36692 5512.931073 4425.53477 5497.902556 1.051488814 0.866322231 1.063744442 0.989027659 0.970202248 0.986903225 0.877492257 1.0027335 0.804949656 1 12.42466562 -5.811546545 0.588243073 1.019114449 0.93945458 0 0.09006152 1.407282519 0.815111604 0.012876813 0.055537378 1.54E-06 5.811546545 -0.079659869 EVELVS(ph)E ddPTM_HeLa_CUDC101_4h_R1 2 EVELVSE 7 0 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 EVELVS(1)E;EVELVS(1)E ; 117.4 0.0057096 718495700 7430 6413.1 5622.8 5551.6 7007.8 6874.5 6323.9 5642.6 7516 7523.6 TRUE FALSE FALSE 6559.066663 6610.68001 5926.785576 5778.018244 6490.848556 6743.380366 6567.814941 6284.930776 7206.187299 7478.849293 0.877015488 0.88391673 0.792472925 0.772581184 0.867894017 0.901660149 0.878185224 0.840360666 0.963542253 1 12.8686006 -8.692538033 0.640292211 1.00138917 0.847315021 0.637877684 0.039342606 0.370549267 0.294418954 0.028852091 0.010252602 2.03E-09 8.692538033 -0.154074149 THS(ph)QGGYGSQGYK ddPTM_HeLa_CUDC101_4h_R1 2 THSQGGYGSQGYK 13 0 K7ER00;Q9Y285-2;Q9Y285;K7ERS0;K7EPH2 K7ER00 FARSA Phenylalanine--tRNA ligase alpha subunit 1 0 T(0.168)HS(0.823)QGGY(0.009)GSQGYK;T(0.31)HS(0.69)QGGYGSQGYK ; 102.03 0.0053233 43834000 5164.1 3628 4416.1 4013.8 5450.8 4556.4 4544.8 3986.3 4646.3 5004.8 TRUE FALSE FALSE 4558.772026 3739.77438 4654.847724 4177.500113 5048.705344 4469.494261 4720.094458 4440.084279 4454.777547 4975.031227 0.916330334 0.751708725 0.935641911 0.839693245 1.014808775 0.898385167 0.94875675 0.89247365 0.895427052 1 12.28048987 -8.686565236 1.050413471 0.991091682 0.901793399 0 0.072228905 0.49158493 1.089766425 0.024387366 0.01259114 2.06E-09 8.686565236 -0.089298283 ETVQTTEDQILK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 ETVQTTEDQILKR 13 1 P18206-2;P18206 P18206-2 VCL Vinculin 0 1 ETVQTTEDQILK(1)R 266.69 2.68E-53 1276800 332.51 0 231.7 133.69 391.91 469.78 518.49 384.64 429.03 294.79 FALSE TRUE FALSE 293.5336819 0 244.2264029 139.1424561 362.9995801 460.8197292 538.488333 428.4258628 411.3452018 293.036576 1.001696395 0 0.833433171 0.474829654 1.23875178 1.572567273 1.837614746 1.462021802 1.403733307 1 8.194936939 -5.436323618 3.383617658 0.869906449 1.64392119 0.50876387 0.364084335 0.158626295 3.444538106 0.050673172 0.119326512 3.66E-06 5.436323618 0.774014741 DLNES(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 1 DLNESPVK 8 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 DLNES(1)PVK 96.334 0.0222 223750000 6253 5023.2 5243.5 5230.9 5207.9 5673.4 4874.7 5077.4 5688 6251.7 TRUE FALSE FALSE 5520.032819 5177.958838 5526.979471 5444.238712 4823.723593 5565.189348 5062.718812 5655.390692 5453.538232 6214.51461 0.888248426 0.833204065 0.889366237 0.876052122 0.776202792 0.895514726 0.814660376 0.91002935 0.877548542 1 12.601426 -8.686469705 0.526859683 1.010170203 0.850606249 0.117127256 0.053812321 0.431182784 0.225483046 0.032616037 0.010233525 2.06E-09 8.686469705 -0.159563954 (ac)ALVDK(ac)HK ddPTM_HeLa_CUDC101_4h_R1 1 ALVDKHK 7 1 P56545 P56545 CTBP2 C-terminal-binding protein 2 0 1 ALVDK(1)HK 44.117 0.023001 23660000 1386.8 1527.2 2055.5 3328.9 7046.6 9332 11528 14869 0 1352.8 FALSE TRUE FALSE 1224.241406 1574.251222 2166.626548 3464.666931 6526.786357 9154.007648 11972.63882 16561.62686 0 1344.753485 0.910383516 1.170661567 1.611170055 2.576432758 4.853518825 6.807201281 8.903222004 12.31573447 0 1 10.39312601 -4.698087211 0.636835565 0.873911697 15.95047328 0.989540637 0.398835549 0.104349182 0.039975938 0.054961874 1.02445768 2.00E-05 4.698087211 15.07656158 up ETVVEVPQVTWEDIGGLEDVKR ddPTM_HeLa_CUDC101_4h_R1 2 ETVVEVPQVTWEDIGGLEDVKR 22 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 154.72 2.89E-07 42049000 3484.1 3550.9 3284.9 3323.6 3799.1 3363 3240 3757.5 4133.1 4157.1 FALSE FALSE TRUE 3075.69908 3660.29902 3462.49163 3459.150774 3518.847962 3298.856378 3364.967885 4185.238612 3962.731869 4132.373384 0.744293604 0.885761929 0.837894185 0.837085726 0.851531949 0.798295815 0.81429425 1.012792945 0.958948164 1 12.0127549 -9.554307049 1.32815447 0.999884678 0.832864501 0.357233532 0.067927014 0.320534072 1.014181898 0.04781562 0.011330614 2.79E-10 9.554307049 -0.167020177 ETVYCLNDDDETEVLKEDIIQGFR ddPTM_HeLa_CUDC101_4h_R1 1 ETVYCLNDDDETEVLKEDIIQGFR 24 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 0 181.64 1.07E-14 194300000 1970.9 1782.3 1623.3 1920.9 2022.7 1604.1 1972.3 1907.9 2100.9 873.71 FALSE FALSE TRUE 1739.87409 1837.21055 1711.060508 1999.242605 1873.489451 1573.504465 2048.372272 2125.087624 2014.300013 868.5131341 2.003278962 2.115351488 1.970103204 2.301914072 2.157122762 1.81172213 2.35848163 2.446811154 2.319251067 1 9.762403856 -9.414333354 0.36154392 0.504756635 2.247609172 0 0.448371777 0.760089383 0.119543013 0.532971828 0.068517878 3.85E-10 9.414333354 1.742852537 ETWLSENQR ddPTM_HeLa_CUDC101_4h_R1 2 ETWLSENQR 9 0 A0A087WUZ3;Q01082;Q01082-2;F8W6C1;P11277-3;P11277;P11277-2;Q01082-3;O15020-2;O15020;A4QPE4 A0A087WUZ3;Q01082-3;O15020-2 SPTBN1;SPTB;SPTBN2 "Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2" 0 0 ; ; 150.36 0.0037621 17869400 1434.39 1034.01 1213.59 1304.55 825.05 1376.32 1169.96 920.9 971.84 1199.15 FALSE FALSE TRUE 1266.252979 1065.866622 1279.200346 1357.755188 764.1877052 1350.068989 1215.085749 1025.731534 931.7803439 1192.017402 1.062277259 0.894170354 1.073138986 1.139039736 0.641087709 1.132591677 1.019352357 0.860500469 0.781683507 1 10.21918958 GEVDSNGSDGGEAS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 GEVDSNGSDGGEASR 15 0 Q7LBC6 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 0 GEVDS(0.001)NGS(0.258)DGGEAS(0.741)R 145.79 0.00031171 5344700 2508.4 2046.9 1923.6 2156.1 2318.6 2324.8 2005.7 1951.8 2444.2 2474.7 TRUE FALSE FALSE 2214.369154 2109.962563 2027.595635 2244.035077 2147.561497 2280.458313 2083.060521 2173.985023 2343.449041 2459.980374 0.900157244 0.857715202 0.824232443 0.912216659 0.872999443 0.92702297 0.846779325 0.883740799 0.952629162 1 11.26443109 -8.684078379 0.701494159 0.998621161 0.875720866 0.593126049 0.031863498 0.276743934 0.26803107 0.017548207 0.006751079 2.07E-09 8.684078379 -0.122900295 ETYVEQEQGENANDRNDR ddPTM_HeLa_CUDC101_4h_R1 2 ETYVEQEQGENANDRNDR 18 1 F2Z2C0;Q9Y2L1 F2Z2C0 DIS3 Exosome complex exonuclease RRP44 0 0 ; ; 125.39 9.66E-05 15211600 1869.55 1792.91 1701.15 1356.27 1926.91 1740.71 1411.52 1689.85 1561.35 1596.33 FALSE FALSE TRUE 1650.404183 1848.147432 1793.119315 1411.584553 1784.765688 1707.508857 1465.962799 1882.215693 1496.990492 1586.834958 1.040060388 1.164675269 1.129997361 0.889559778 1.124733029 1.076046912 0.923828147 1.186144585 0.943381342 1 10.63193637 -8.056908373 1.700573093 1.010803982 1.063232871 0.113938152 0.094097439 0.7254292 4.264495919 0.019811749 0.017018418 8.77E-09 8.056908373 0.05242889 EGT(ph)GQQERESPRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGR ddPTM_HeLa_CUDC101_4h_R1 1 EGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 48 2 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 2 0 EGT(0.545)GQQERES(0.463)PRPLQLPGAEGPAIS(0.993)DGEEGGGEPGAGGGAAGAAGAGR 51.948 0.005431 35281000 210.75 226.74 212.9 164.95 195.49 200.56 57.158 0 252.08 258.24 TRUE FALSE FALSE 186.0462045 233.7255906 224.410018 171.677374 181.0690922 196.7346522 59.36260321 0 241.6891557 256.703977 0.724749989 0.910486831 0.874197668 0.668775669 0.705361461 0.766387239 0.231249254 0 0.941509199 1 8.003961837 -4.692122661 1.984740124 0.847424907 1.07E-29 0.884434897 0.103981187 0.110420707 0.767153995 0.01857398 0.124297449 2.03E-05 4.692122661 -0.847424907 down HSLDS(ph)DEEEDDDDGGSSK ddPTM_HeLa_CUDC101_4h_R1 6 HSLDSDEEEDDDDGGSSK 18 0 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 HSLDS(1)DEEEDDDDGGSSK;HS(0.001)LDS(0.999)DEEEDDDDGGSSK;HSLDS(0.732)DEEEDDDDGGS(0.246)S(0.021)K;HS(0.001)LDS(0.999)DEEEDDDDGGSSK;HSLDS(1)DEEEDDDDGGSSK;HS(0.224)LDS(0.776)DEEEDDDDGGSSK ;;;;; 267.46 1.87E-71 98287000 20489.5 15845.1 16258.2 16321.7 17012.2 16662.7 15661.7 14082 19837.9 22559.2 TRUE FALSE FALSE 18087.75187 16333.26875 17137.16747 16987.36947 15757.2439 16344.88676 16265.77702 15685.03796 19020.17337 22425.01688 0.806588105 0.728350344 0.764198643 0.757518693 0.702663636 0.728868426 0.725340681 0.699443753 0.848167628 1 14.45282145 -8.680446306 0.382533107 1.051983506 0.70635382 0.667381037 0.049978955 0.201279578 0.054200628 0.028807485 0.008257796 2.09E-09 8.680446306 -0.345629686 S(ph)ISESSR ddPTM_HeLa_CUDC101_4h_R1 2 SISESSR 7 0 Q9H307 Q9H307 PNN Pinin 1 0 S(0.997)IS(0.003)ESSR;S(0.867)IS(0.132)ES(0.001)SR ; 94.309 0.028497 48525000 4447.6 1798.58 4234 4370.6 2645.6 2230.59 2447.6 1407.8 4738.7 5794.9 TRUE FALSE FALSE 3926.25907 1853.992118 4462.902847 4548.851959 2450.439359 2188.045212 2542.004752 1568.058261 4543.36878 5760.431677 0.681591119 0.321849511 0.774751459 0.789672062 0.425391619 0.379840494 0.441287198 0.272211936 0.788720192 1 12.49196121 -8.679424428 0.113557821 1.607135979 6.86E-15 0.536423098 0.160573292 8.049450782 0.348017137 3.175077736 1.674595937 2.09E-09 8.679424428 -1.607135979 S(ph)SGDPEQIKEDSLSEESADAR ddPTM_HeLa_CUDC101_4h_R1 2 SSGDPEQIKEDSLSEESADAR 21 1 Q9BVS4-2;Q9BVS4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 0 S(0.366)S(0.049)GDPEQIKEDS(0.227)LS(0.322)EES(0.036)ADAR;S(0.931)S(0.048)GDPEQIKEDS(0.006)LS(0.015)EESADAR ; 84.602 0.0006217 20230300 5396.3 5125.8 5034.8 5381.8 5122.3 4843.5 4516.3 4438.1 4606.7 3625.1 TRUE FALSE FALSE 4763.753894 5283.719822 5306.996517 5601.293066 4744.438134 4751.118307 4690.495204 4943.315365 4416.809876 3603.537744 1.321965866 1.466259048 1.472718449 1.554387234 1.316605645 1.318459427 1.301636208 1.371795085 1.225687141 1 11.81519824 -8.673126911 0.747762387 1.011315751 1.396048003 0.507020041 0.1021705 0.24624549 0.273699684 0.049384754 0.020197418 2.12E-09 8.673126911 0.384732251 S(ph)HSPSIDGTPK ddPTM_HeLa_CUDC101_4h_R1 2 SHSPSIDGTPK 11 0 A0A0C4DH56;Q9BWT3-2;Q9BWT3 A0A0C4DH56 PAPOLG Poly(A) polymerase gamma 1 0 S(0.929)HS(0.069)PS(0.002)IDGTPK;S(0.935)HS(0.065)PSIDGTPK ; 141.34 0.00086028 44360000 15012.4 11479.5 12157.4 11842.3 13384.4 13716.5 13176.7 11972.6 14072.7 15127.1 TRUE FALSE FALSE 13252.66923 11833.16979 12814.66582 12325.28018 12397.05948 13454.88062 13684.92973 13335.51239 13492.61735 15037.12334 0.881330088 0.78693042 0.852201949 0.819656786 0.824430258 0.894777566 0.910076311 0.88683933 0.897287137 1 13.87624098 -8.672722196 0.823943546 0.992982056 0.85573537 0.307970703 0.046924676 0.270021942 0.367054277 0.019665549 0.008677018 2.12E-09 8.672722196 -0.137246686 VLGDHLLLDPTHELPPYTPPPMLS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 4 VLGDHLLLDPTHELPPYTPPPMLSPVR 27 0 Q96PN7;Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5 Q96PN7 TRERF1;BCAR2 Transcriptional-regulating factor 1 1 0 VLGDHLLLDPT(0.001)HELPPYT(0.085)PPPMLS(0.914)PVR;VLGDHLLLDPTHELPPY(0.014)T(0.017)PPPMLS(0.969)PVR;VLGDHLLLDPTHELPPY(0.008)T(0.012)PPPMLS(0.979)PVR;VLGDHLLLDPTHELPPY(0.001)T(0.001)PPPMLS(0.999)PVR ;;; 103.18 4.34E-07 33897700 2623.82 1974.25 1780.55 1872.38 2635.5 2350.23 2109.78 1880.6 2306.03 3067.34 TRUE FALSE FALSE 2316.259797 2035.074302 1876.811919 1948.74375 2441.084416 2305.403279 2191.154921 2094.679902 2210.974467 3049.095325 0.759654766 0.667435447 0.615530746 0.63912195 0.800593014 0.756094196 0.718624604 0.686984065 0.725124744 1 11.57416554 -8.672618576 0.706928203 0.995454055 0.70066467 0.102516628 0.097649023 0.23649198 0.233622248 0.035908964 0.014057863 2.13E-09 8.672618576 -0.294789385 SIS(ph)VGENLGLVAEPQAHAPIR ddPTM_HeLa_CUDC101_4h_R1 1 SISVGENLGLVAEPQAHAPIR 21 0 O60336-4;O60336-3;O60336-6;O60336 O60336-4 MAPKBP1 Mitogen-activated protein kinase-binding protein 1 1 0 S(0.026)IS(0.974)VGENLGLVAEPQAHAPIR 160.3 1.41E-10 0 405.83 364.83 406.21 334.05 512.94 285.05 422.41 361.22 193.82 250.33 TRUE FALSE FALSE 358.2592226 376.0699799 428.1709413 347.6740029 475.1014381 279.6131462 438.7024952 402.3398247 185.8306576 248.841026 1.439711242 1.511286084 1.720660569 1.397173161 1.909256869 1.123661764 1.762982986 1.61685487 0.746784646 1 7.95908055 -8.671052542 0.505301379 0.953666113 1.596321431 0.597035656 0.221064995 0.591550991 0.284926214 0.177080381 0.055252419 2.13E-09 8.671052542 0.642655319 S(ph)GTNSPPPPFSDWGR ddPTM_HeLa_CUDC101_4h_R1 2 SGTNSPPPPFSDWGR 15 0 D6RAU6;D6REP2;D6RAJ6;Q9UKT5-2;Q9UKT5 D6RAU6 FBXO4 F-box only protein 4 1 0 S(0.965)GT(0.017)NS(0.017)PPPPFSDWGR;S(0.909)GT(0.019)NS(0.072)PPPPFSDWGR ; 222.75 1.55E-32 229350000 14947.6 12989.6 12386 11625.8 14329.6 12847 12585.8 11840.1 14181.4 14218.7 TRUE FALSE FALSE 13195.46499 13389.79418 13055.62463 12099.95037 13272.53396 12601.96488 13071.23852 13187.92912 13596.83669 14134.12654 0.933588995 0.94733793 0.923695185 0.856080518 0.939041682 0.891598419 0.92479988 0.933055827 0.961986342 1 13.78689511 -8.670781619 0.456367711 1.009171812 0.910302032 0.470298323 0.026563181 0.603927195 0.234498304 0.026715193 0.007988522 2.13E-09 8.670781619 -0.09886978 RLS(ph)LGQGDSTEAATEER ddPTM_HeLa_CUDC101_4h_R1 3 RLSLGQGDSTEAATEER 17 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RLS(1)LGQGDSTEAATEER;RLS(1)LGQGDSTEAATEER;RLS(1)LGQGDSTEAATEER ;; 113.63 0.00039838 32491400 2811.72 2214.99 2360.19 1914.53 2318.03 2206.93 1849.76 1957.02 2607.72 3239.7 TRUE FALSE FALSE 2482.134444 2283.231216 2487.789011 1992.612809 2147.033545 2164.836487 1921.105863 2179.799246 2500.228678 3220.43012 0.770746252 0.708983313 0.772502094 0.618741204 0.666691549 0.672219675 0.596537044 0.676865873 0.776364828 1 11.65303767 -8.670567421 0.294452194 1.104392153 0.612615809 0.484901345 0.078343512 0.46244381 0.076744276 0.083207808 0.025308846 2.14E-09 8.670567421 -0.491776345 EKDENLHEPPS(ph)SDDMKSDDESSQK ddPTM_HeLa_CUDC101_4h_R1 1 EKDENLHEPPSSDDMKSDDESSQK 24 2 Q99081;Q99081-3;B4DGI9;Q99081-4;Q99081-2;B4DZP2;F5GY10;H0YNP8 Q99081 TCF12 Transcription factor 12 1 0 EKDENLHEPPS(0.582)S(0.073)DDMKS(0.258)DDES(0.044)S(0.044)QK 55.631 0.0044299 17572000 4607.5 3652.3 3427.2 3618.4 3083.4 2608.8 2856.4 1755 4438.7 4954.4 TRUE FALSE FALSE 4067.415835 3764.823034 3612.484799 3765.973992 2855.943725 2559.041487 2966.572305 1954.782106 4255.734907 4924.931008 0.825882805 0.764441782 0.733509727 0.764675482 0.579895174 0.519609611 0.602358145 0.396915632 0.864120716 1 12.2658878 -4.682603655 0.184057437 1.068893582 1.80E-23 0.867578435 0.062005472 2.33548185 0.091056236 0.084871561 0.600727168 2.08E-05 4.682603655 -1.068893582 down TES(ph)VPSDINNPVDR ddPTM_HeLa_CUDC101_4h_R1 2 TESVPSDINNPVDR 14 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 T(0.333)ES(0.667)VPSDINNPVDR;TES(0.995)VPS(0.005)DINNPVDR ; 205.33 1.00E-17 184306000 6246.6 5555.3 5592.4 5803.8 5819.9 5448.6 5104.3 5554.2 4975.3 4889.7 TRUE FALSE FALSE 5514.383017 5726.452208 5894.74206 6040.50405 5390.577572 5344.677033 5301.174561 6186.467677 4770.216028 4860.615847 1.13450295 1.178133057 1.212756211 1.24274459 1.109031806 1.099588447 1.090638456 1.272774453 0.981401571 1 12.2469234 -8.670000146 0.710550092 1.002882612 1.167171001 0.585723514 0.059036626 0.41071863 0.410449836 0.034767211 0.013700919 2.14E-09 8.670000146 0.164288389 EVDATSK(ac)EAK ddPTM_HeLa_CUDC101_4h_R1 2 EVDATSKEAK 10 1 Q9UEE9-2;Q9UEE9 Q9UEE9-2 CFDP1 Craniofacial development protein 1 0 1 ; EVDATSK(1)EAK;EVDATSK(1)EAK 150.1 0.0004108 2831300 1286.64 1102.73 1200.38 1427.91 1583.77 1212.74 1481.76 1881.4 1221.38 1319.44 FALSE TRUE FALSE 1135.82201 1136.703804 1265.276174 1486.146342 1466.938442 1189.609005 1538.91198 2095.570971 1171.034199 1311.591912 0.865987354 0.866659663 0.964687386 1.13308593 1.118441208 0.906996295 1.173316155 1.597730934 0.892834264 1 10.3571032 -1.0000001 0.81145719 0.946881967 178.1808844 0.807465468 0.092994839 171.9912421 0.53605027 0.016258453 56131.71138 0.099999977 1.0000001 177.2340024 EVDDLEQWIAER ddPTM_HeLa_CUDC101_4h_R1 3 EVDDLEQWIAER 12 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ;; ;; 220.29 1.78E-31 56449000 4011.9 3175.84 2792.37 3108.84 4295.2 3856.1 3925.12 3567.25 4120.8 3583 FALSE FALSE TRUE 3541.631164 3273.683866 2943.333969 3235.631933 3978.351653 3782.551317 4076.513193 3973.331321 3950.93888 3561.688157 0.994368684 0.919138263 0.826387331 0.908454584 1.116984834 1.062010808 1.144545231 1.115575296 1.109288266 1 11.79834549 -5.746947821 24.98766154 0.970960468 1.108850369 0.508329615 0.071832592 155.0018831 267266.7189 0.009849037 0.019628089 1.79E-06 5.746947821 0.137889901 EVDDLGPEVGDIK ddPTM_HeLa_CUDC101_4h_R1 4 EVDDLGPEVGDIK 13 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 0 ;;; ;;; 227.81 2.26E-32 105567000 15176.6 13162.7 12492.3 12494.9 13002.9 12739.9 12555.4 12439.3 13157.8 13346.8 FALSE FALSE TRUE 13397.62195 13568.22719 13167.67153 13004.49603 12043.70197 12496.90763 13039.66598 13855.33963 12615.42991 13267.41264 1.009814221 1.022673188 0.992482248 0.980183279 0.907765689 0.941924999 0.982834132 1.044313613 0.950858337 1 13.69559943 -6.288319749 3.237735759 1.005997381 0.966289541 0.060351114 0.037315542 0.288505887 6.223910287 0.005242418 0.00855271 5.15E-07 6.288319749 -0.03970784 RGVS(ph)SPVETR ddPTM_HeLa_CUDC101_4h_R1 2 RGVSSPVETR 10 1 A8MVZ6;Q96G01-4;Q96G01-3;Q96G01 A8MVZ6 BICD1 Protein bicaudal D homolog 1 1 0 RGVS(0.5)S(0.5)PVETR;RGVS(0.5)S(0.5)PVETR ; 81.278 0.022202 26657000 2311.97 2190.16 2150.8 2060.93 2429.96 1975.76 1946.33 1615.21 2445.28 1764.59 TRUE FALSE FALSE 2040.964381 2257.636234 2267.078754 2144.983633 2250.706692 1938.07567 2021.4006 1799.078977 2344.484523 1754.09414 1.163543241 1.287066744 1.292449876 1.222844079 1.283116248 1.104886919 1.152390031 1.025645623 1.336578505 1 10.77651046 -8.668991229 0.897082867 1.013050419 1.196025813 0 0.13015747 0.385502194 0.623718423 0.037910917 0.017876965 2.14E-09 8.668991229 0.182975394 (ac)AS(ph)SVGNVADSTEPTKR ddPTM_HeLa_CUDC101_4h_R1 1 ASSVGNVADSTEPTKR 16 1 O15294 O15294 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit 1 0 AS(0.5)S(0.5)VGNVADSTEPTKR 85.813 0.00060848 0 1164.2 1299.6 901.57 956.46 1054.5 1277.3 846.48 1064 1020.1 838.01 TRUE FALSE FALSE 1027.734241 1339.639136 950.3116013 995.468573 976.7116359 1252.937631 879.1290172 1185.121459 978.0510462 833.0254793 1.233736862 1.608161057 1.14079536 1.195003752 1.172487109 1.504080802 1.055344691 1.422671321 1.174094995 1 9.702216813 -8.667260113 0.890055163 1.017596728 1.285337868 0.159977158 0.171472236 0.478438154 0.762051974 0.068714362 0.032267854 2.15E-09 8.667260113 0.267741139 DSISAVSSEKVSPS(ph)KSPSLSPSPPSPLEK ddPTM_HeLa_CUDC101_4h_R1 1 DSISAVSSEKVSPSKSPSLSPSPPSPLEK 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DSISAVS(0.012)S(0.012)EKVS(0.151)PS(0.661)KS(0.151)PS(0.009)LS(0.003)PSPPSPLEK 78.978 5.65E-06 49089000 3117 2464.2 2637.3 2041.9 2855 2685.3 2228.6 3091.6 3028.3 3328 TRUE FALSE FALSE 2751.629985 2540.119081 2779.880415 2125.177508 2644.392338 2634.082377 2314.557849 3443.535247 2903.472192 3308.204908 0.831759235 0.767823987 0.84029874 0.642395972 0.799343575 0.796227093 0.699641622 1.040907484 0.877657906 1 11.69183288 -8.667197813 0.67165023 0.998941274 0.78922292 0.181153769 0.104709118 0.534860629 0.474869931 0.057009366 0.021562909 2.15E-09 8.667197813 -0.209718354 EVDEQMLNVQNK ddPTM_HeLa_CUDC101_4h_R1 7 EVDEQMLNVQNK 12 0 Q5JP53;P07437;Q5ST81;P68371;Q9BVA1;Q13885 Q5JP53;P68371;Q9BVA1 TUBB;TUBB4B;TUBB2B;TUBB2A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain 0 0 ;;;;;; ;;;;;; 261.65 7.35E-69 608200000 20027.28 17532.08 16182.42 16930.37 17928.25 16523.58 16768.53 17018.51 16671.24 18302.9 FALSE FALSE TRUE 17679.7126 18072.2226 17057.29057 17620.86367 16605.71872 16208.42024 17415.29782 18955.82839 15984.04443 18194.03354 0.97173134 0.993304897 0.937521113 0.968496822 0.912701336 0.890864591 0.957198292 1.041870586 0.878532207 1 14.1511778 -6.76495661 24.99803402 0.986776972 0.947964511 0 0.051087093 116.7970813 830113.2392 0.006220631 0.008363811 1.72E-07 6.76495661 -0.038812462 IPEVPLHDT(ph)PER ddPTM_HeLa_CUDC101_4h_R1 1 IPEVPLHDTPER 12 0 Q96AY2;Q96AY2-2 Q96AY2 EME1 Crossover junction endonuclease EME1 1 0 IPEVPLHDT(1)PER 114.01 0.0066898 9872700 1914.1 1441.7 1586.4 1396.3 1604.5 1835.5 1515.6 1237.1 2058.2 2117.7 TRUE FALSE FALSE 1689.7321 1486.117068 1672.165583 1453.247149 1486.139232 1800.490896 1574.0572 1377.926463 1973.360125 2105.103826 0.802683496 0.705959036 0.794338769 0.690344643 0.705969565 0.855297907 0.74773376 0.654564609 0.937417005 1 11.03967568 -8.666007862 0.52811089 1.017428492 0.732810667 0.711543681 0.057459269 0.362256862 0.192223242 0.04877228 0.015663993 2.16E-09 8.666007862 -0.284617825 TS(ph)LADSSIFDSK ddPTM_HeLa_CUDC101_4h_R1 2 TSLADSSIFDSK 12 0 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;C9J0L6;C9JDV9;C9JTI2;C9J1C4;C9JDB4 Q9H8V3-2 ECT2 Protein ECT2 1 0 T(0.177)S(0.823)LADSSIFDSK;T(0.032)S(0.968)LADSSIFDSK ; 116.19 0.0041988 14033700 3386.8 2614.6 2223.18 2561.8 3043.5 2741.3 2609.46 1520.13 3377.8 3525.1 TRUE FALSE FALSE 2989.804438 2695.152727 2343.371836 2666.281277 2818.987069 2689.01427 2710.107746 1693.175455 3238.565654 3504.132548 0.853222416 0.769135496 0.668745204 0.760896239 0.80447501 0.76738372 0.77340332 0.483193895 0.924213228 1 11.77484163 -8.665953766 0.052779123 1.803090309 4.24E-21 0.611449666 0.082768637 35.26064709 0.669759547 13.16328002 9.653312503 2.16E-09 8.665953766 -1.803090309 EVDIGIPDATGR ddPTM_HeLa_CUDC101_4h_R1 2 EVDIGIPDATGR 12 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 123.96 0.014977 15545400 4255.1 4092.9 3991.2 4088.4 4059.3 4201.9 3529.5 4334.1 4549.1 4040.2 FALSE FALSE TRUE 3756.323628 4218.997398 4206.976345 4255.142624 3759.853526 4121.755758 3665.633997 4827.476425 4361.584173 4016.168711 0.935300257 1.05050303 1.047509865 1.059502957 0.936179179 1.026290491 0.912719126 1.202010367 1.086006213 1 11.97160416 -7.255212818 24.85577927 0.969447344 1.026397948 0 0.083492637 758.7521562 3028858.835 0.011852982 0.014319929 5.56E-08 7.255212818 0.056950605 T(ph)SPGRVDLPGSSTTLTK ddPTM_HeLa_CUDC101_4h_R1 3 TSPGRVDLPGSSTTLTK 17 1 O94875-12;O94875-11;O94875-9;O94875-4;O94875-10;O94875-5;O94875-3;H7BXR3;O94875-8;H7BZX1;O94875-2;O94875-7;O94875;H7C1R7;H7BZK1 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 T(0.813)S(0.187)PGRVDLPGSSTTLTK;T(0.5)S(0.5)PGRVDLPGSSTTLTK;T(0.814)S(0.186)PGRVDLPGSSTTLTK ;; 120.99 0.00035863 383270000 10175.9 8385.5 8511 8518.9 9432.4 8365 7981.1 8453.5 9607.8 9796.1 TRUE FALSE FALSE 8983.096428 8643.847316 8971.130404 8866.337564 8736.590644 8205.451562 8288.9337 9415.81227 9211.762417 9737.832362 0.922494462 0.887656205 0.921265644 0.910504231 0.897180227 0.842636355 0.851209324 0.966931029 0.945976689 1 13.24938495 -8.663742402 0.402406487 1.017454415 0.885558036 0.359181469 0.037002579 0.806329881 0.24256568 0.045062237 0.013195134 2.17E-09 8.663742402 -0.131896379 ARTDEVPAGGS(ph)RSEAEDEDDEDYVPYVPLR ddPTM_HeLa_CUDC101_4h_R1 2 ARTDEVPAGGSRSEAEDEDDEDYVPYVPLR 30 2 D6RD33;D6RGI7;A0A499FJW5;Q9UJV9 D6RD33 DDX41 Probable ATP-dependent RNA helicase DDX41 1 0 ART(0.003)DEVPAGGS(0.498)RS(0.498)EAEDEDDEDYVPYVPLR;ART(0.002)DEVPAGGS(0.497)RS(0.497)EAEDEDDEDY(0.004)VPYVPLR ; 61.488 0.000608 23552000 1394.92 1366.05 1329.41 1425.6 1567 1645.83 1516.34 1372.88 1555.95 605.98 TRUE FALSE FALSE 1231.409592 1408.136381 1401.281926 1483.74213 1451.405532 1614.438535 1574.825742 1529.16311 1491.813082 602.375604 2.044255418 2.337638463 2.326259424 2.463151097 2.409469312 2.680119388 2.614358436 2.538554184 2.476549635 1 9.234519532 -8.662091536 0.336503977 0.632833849 2.675053424 0 0.464340438 0.161580681 0.034341445 0.128771464 0.038036351 2.18E-09 8.662091536 2.042219575 FSS(ph)PAPSSDGK ddPTM_HeLa_CUDC101_4h_R1 1 FSSPAPSSDGK 11 0 Q96QT6-5;Q96QT6-3;Q96QT6;Q96QT6-4 Q96QT6-5 PHF12 PHD finger protein 12 1 0 FS(0.23)S(0.757)PAPS(0.012)S(0.001)DGK 80.737 0.037915 9963000 2634.8 1962.3 2077.5 2100.9 2485.2 2076.3 1842.6 1990.5 2730.2 2875.3 TRUE FALSE FALSE 2325.952738 2022.756137 2189.815934 2186.583783 2301.871747 2036.698037 1913.669699 2217.090474 2617.66 2858.197588 0.813783046 0.707703395 0.766152747 0.765021912 0.805357809 0.712581259 0.669537231 0.775695314 0.915842912 1 11.48088994 -8.661507552 0.443725668 1.033573259 0.728484243 0.753282405 0.046941413 0.355454588 0.130797186 0.047927151 0.014349114 2.18E-09 8.661507552 -0.305089016 GISS(ph)DNESVASCNSVK ddPTM_HeLa_CUDC101_4h_R1 2 GISSDNESVASCNSVK 16 0 A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-4;Q8IVL1-8;Q8IVL1-9;Q8IVL1-10;Q8IVL1-13;Q8IVL1-12;Q8IVL1-11;Q8IVL1-3;Q8IVL1-2;Q8IVL1;Q8IVL1-5;E9PNV5 A0A0A0MTL4 NAV2 Neuron navigator 2 1 0 GIS(0.016)S(0.984)DNESVASCNSVK;GIS(0.022)S(0.978)DNESVASCNSVK ; 311.7 5.58E-144 38564000 11890.3 10939.8 10159.9 9629.5 13194.8 9595 10146.9 10811.6 11002.9 9528.2 TRUE FALSE FALSE 10496.53706 11276.84227 10709.17493 10022.23263 12221.44589 9411.991361 10538.26933 12042.34884 10549.3558 9471.525843 1.108220284 1.190604604 1.130670507 1.058143408 1.290335485 0.993714373 1.112626361 1.271426488 1.113796867 1 13.20938114 -8.661197899 0.556521995 0.992334286 1.146926971 0.079973017 0.091482568 0.877193903 0.521948568 0.065251546 0.021731045 2.18E-09 8.661197899 0.154592685 (ac)ADHS(ph)FS(ph)DGVPSDSVEAAK ddPTM_HeLa_CUDC101_4h_R1 3 ADHSFSDGVPSDSVEAAK 18 0 Q99733;Q99733-2;E9PNJ7;C9J6D1;C9JZI7;E9PKT8;E9PS34;E9PNW0;E9PJJ2;E9PP22;E9PKI2;C9J1B1 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 2 0 ADHS(0.996)FS(0.944)DGVPS(0.034)DS(0.027)VEAAK;ADHS(0.995)FS(0.995)DGVPS(0.005)DS(0.005)VEAAK;ADHS(1)FS(0.984)DGVPS(0.004)DS(0.012)VEAAK ;; 82.349 0.0020202 16152400 3186.16 2802.21 2192.94 2260.15 2806.39 2471.18 2982.05 2327.2 3314.19 3622 TRUE FALSE FALSE 2812.683155 2888.542769 2311.49697 2352.328686 2599.368201 2424.046359 3097.068667 2592.119041 3177.577685 3600.456183 0.781201884 0.802271329 0.642001139 0.653341845 0.721955238 0.673260897 0.860187851 0.719941838 0.882548634 1 11.81396399 -8.661078197 0.578524559 1.008786932 0.718881114 0.579193859 0.070734194 0.354365663 0.229165613 0.050045103 0.017092205 2.18E-09 8.661078197 -0.289905817 SLS(ph)PQEDALTGSR ddPTM_HeLa_CUDC101_4h_R1 1 SLSPQEDALTGSR 13 0 Q96EN8 Q96EN8 MOCOS Molybdenum cofactor sulfurase 1 0 S(0.168)LS(0.832)PQEDALTGSR 134.02 0.00096096 82535000 2700.1 2191.4 2075.7 2102.9 2280.6 2344.8 2146.2 1957.5 2276.9 2959 TRUE FALSE FALSE 2383.598371 2258.914437 2187.918621 2188.665352 2112.364682 2300.076847 2228.979653 2180.333888 2183.045218 2941.399736 0.810361931 0.767972611 0.743835866 0.744089735 0.718149477 0.781966768 0.757795557 0.741257253 0.742179035 1 11.52228714 -8.659962771 0.502012926 1.019965831 0.74173669 0 0.080699626 0.148252818 0.070797733 0.019140183 0.006024406 2.19E-09 8.659962771 -0.278229141 EVEEDEYK ddPTM_HeLa_CUDC101_4h_R1 2 EVEEDEYK 8 0 P14625 P14625 HSP90B1 Endoplasmin 0 0 ; ; 152.63 0.012542 226190000 8130.1 7293.6 7357.1 7516.9 7170.1 6703.1 7210.3 6429.4 7146.7 7591.3 FALSE FALSE TRUE 7177.102002 7518.307171 7754.84708 7823.471673 6641.176008 6575.249536 7488.403686 7161.296907 6852.110001 7546.14661 0.951094959 0.996310774 1.027656562 1.036750553 0.880075137 0.871338694 0.992348025 0.9490005 0.90802768 1 12.88152441 -5.757787075 24.99942846 0.985954797 0.924426706 0.305793721 0.046812597 90.55344045 619813.2591 0.006478829 0.012563942 1.75E-06 5.757787075 -0.06152809 T(ph)GAIVDVPVGEELLGR ddPTM_HeLa_CUDC101_4h_R1 3 TGAIVDVPVGEELLGR 16 0 P25705;P25705-2;K7ERX7;K7EK77;K7EQH4;K7EJP1 P25705 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 1 0 T(1)GAIVDVPVGEELLGR;T(1)GAIVDVPVGEELLGR;T(1)GAIVDVPVGEELLGR ;; 148.33 0.0010022 7090600 1357.38 1273.56 961.33 1142.3 1276.42 1117.68 1149.08 1115.89 1247.59 1322.74 TRUE FALSE FALSE 1198.269974 1312.796874 1013.302408 1188.887931 1182.26104 1096.362116 1193.400401 1242.918407 1196.163812 1314.872284 0.911320429 0.998421588 0.77064702 0.904185103 0.899145152 0.833816432 0.907616972 0.945276908 0.90971863 1 10.36070696 -8.65801847 0.48747732 1.008344358 0.885337508 0.075393665 0.062690585 0.966446018 0.434020622 0.054541755 0.016968533 2.20E-09 8.65801847 -0.12300685 EVEELEQLTQQLMQDMEHPQR ddPTM_HeLa_CUDC101_4h_R1 2 EVEELEQLTQQLMQDMEHPQR 21 0 Q15942-2;Q15942;H0Y2Y8;C9JJK5 Q15942-2 ZYX Zyxin 0 0 ; ; 114.1 6.13E-06 74273000 5677.7 5170.8 4764.2 4620 5113.6 5344.6 4639.8 5203.9 5410.6 5457.8 FALSE FALSE TRUE 5012.168613 5330.106219 5021.767063 4808.423569 4736.379916 5242.66066 4818.75864 5796.290941 5187.572778 5425.336763 0.9238447 0.982447072 0.925613889 0.886290341 0.873011229 0.966329076 0.888195305 1.068374406 0.956175258 1 12.40549698 -9.368477064 0.754533658 1.006922832 0.934058537 0.042231468 0.056105753 1.221812097 1.048036054 0.057362699 0.01031708 4.28E-10 9.368477064 -0.072864295 EVEETDEMDQVELVDFDPNQER ddPTM_HeLa_CUDC101_4h_R1 4 EVEETDEMDQVELVDFDPNQER 22 0 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 0 ;;; ;;; 204.05 1.15E-19 62779900 10956.63 10467.6 9734.57 9754.7 12229.1 10478.1 9667.98 9790.6 10696.84 10483.5 FALSE FALSE TRUE 9672.310441 10790.09435 10260.8503 10152.53883 11326.98366 10278.2477 10040.87723 10905.12233 10255.91173 10421.14368 0.928142893 1.035404048 0.984618447 0.974225013 1.086923279 0.98628788 0.963510104 1.04644199 0.984144548 1 13.347226 -7.252024005 24.96858228 0.966067477 1.008761422 0.175984893 0.039349449 859.8770794 2280306.163 0.007104778 0.008641873 5.60E-08 7.252024005 0.042693945 EVEGDDVPESIMLEMK ddPTM_HeLa_CUDC101_4h_R1 2 EVEGDDVPESIMLEMK 16 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 0 ; ; 195.88 1.78E-15 8958600 3329.8 2741.21 2669.08 2756.06 3421.4 2712.5 2853.4 1900.55 2910.44 2947.56 FALSE FALSE TRUE 2939.485892 2825.663431 2813.378538 2868.46404 3169.010138 2660.763582 2963.456594 2116.90093 2790.470431 2930.027782 1.003227993 0.964381105 0.960188349 0.978988683 1.081563171 0.908101827 1.011409043 0.722484934 0.952369957 1 11.51669863 -4.259263546 24.97191135 0.994420394 0.722484839 0.757193416 0.044184443 59.38589486 681520.1977 0.005301574 0.047148886 5.50E-05 4.259263546 -0.271935555 (ac)MEPPGGS(ph)LGPGRGTR ddPTM_HeLa_CUDC101_4h_R1 1 MEPPGGSLGPGRGTR 15 1 A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610;B4E2I7 A0A2R8Y5N1 DIAPH1 Protein diaphanous homolog 1 1 0 MEPPGGS(0.767)LGPGRGT(0.233)R 47.894 0.014723 19475000 1515.6 1346 1597.8 1591.5 1859.4 1418 1183.4 990.21 1532.1 813.1 TRUE FALSE FALSE 1337.943666 1387.468665 1684.181901 1656.408249 1722.235766 1390.954013 1229.044134 1102.931504 1468.94619 808.263645 1.65533075 1.716604072 2.083703642 2.049341523 2.130784648 1.720916215 1.520598065 1.364568988 1.817409701 1 9.658682148 -8.657981314 0.702471623 1.015097117 1.811751732 0 0.337400298 0.371404079 0.363608051 0.151526016 0.059885819 2.20E-09 8.657981314 0.796654615 RSAAGS(ph)PPAVAAAGSGNGAGGGGGVGCAPAAGAGR ddPTM_HeLa_CUDC101_4h_R1 1 RSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGR 35 1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 RS(0.35)AAGS(0.65)PPAVAAAGSGNGAGGGGGVGCAPAAGAGR 107.3 2.72E-15 12302000 1443.7 1430.5 1228 1216.7 1652.8 1455.6 983.36 1425.6 1812.6 985.99 TRUE FALSE FALSE 1274.471675 1474.572009 1294.389394 1266.322285 1530.876237 1427.836855 1021.288525 1587.884542 1737.883861 980.1252876 1.300315062 1.504472977 1.320636668 1.292000422 1.561918926 1.45679014 1.041997934 1.62008323 1.773124194 1 9.936822368 -8.655897447 0.616617399 0.992268642 1.392756381 0 0.284907566 0.516905918 0.383993728 0.102624404 0.036836245 2.21E-09 8.655897447 0.400487739 TEQELPRPQS(ph)PSDLDS(ph)LDGR ddPTM_HeLa_CUDC101_4h_R1 1 TEQELPRPQSPSDLDSLDGR 20 1 P54259 P54259 ATN1 Atrophin-1 2 0 TEQELPRPQS(0.96)PS(0.099)DLDS(0.941)LDGR 70.112 0.0097767 13767000 2571.1 2191.3 1968.6 2287.9 2186.9 1931.7 1310.6 917.89 2198.3 2253.6 TRUE FALSE FALSE 2269.719556 2258.811356 2075.028471 2381.210451 2025.576744 1894.856041 1361.150281 1022.378887 2107.685144 2240.195487 1.013179238 1.00830993 0.926271159 1.062947616 0.904196422 0.845844058 0.607603349 0.456379317 0.940848759 1 11.12940892 -4.663536115 1.148269103 1.003986071 0.361246151 0.947282651 0.042535489 0.101651769 0.168971522 0.005108667 0.065768267 2.17E-05 4.663536115 -0.64273992 down IALEARPLLSQEDS(ph)EEEENELEAINRK ddPTM_HeLa_CUDC101_4h_R1 1 IALEARPLLSQEDSEEEENELEAINRK 27 2 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 IALEARPLLS(0.199)QEDS(0.801)EEEENELEAINRK 41.597 0.027952 8946000 476.99 401.03 555.1 463.53 402.35 412.65 443.6 415.99 471.93 291.26 TRUE FALSE FALSE 421.0779553 413.385259 585.1103851 482.4347569 372.6694421 404.7793888 460.7098006 463.3446201 452.4768457 289.5275726 1.454362193 1.42779237 2.020914208 1.666282602 1.287163909 1.398068533 1.591246721 1.600347131 1.562810898 1 8.177556937 -8.655244168 0.680981065 1.006054769 1.568773467 0.003400849 0.2514285 0.422579342 0.387792111 0.12084221 0.046750812 2.21E-09 8.655244168 0.562718698 EVESPYEVHDYIR ddPTM_HeLa_CUDC101_4h_R1 1 EVESPYEVHDYIR 13 0 I1E4Y6;Q6Y7W6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 0 0 100.73 0.008478 9135200 6241.4 4640 4981.9 4763.5 5071.1 5087.6 4916 4653.1 5178.5 4960.4 FALSE FALSE TRUE 5509.792553 4782.9529 5251.236583 4957.77612 4697.015056 4990.562507 5105.611767 5182.790096 4965.040038 4930.89532 1.117402053 0.969996844 1.064966146 1.005451505 0.952568398 1.01210068 1.035433007 1.051084998 1.006924649 1 12.26763391 -7.244876938 24.96230322 1.055439862 1.013281714 0.053472524 0.044136224 1293.276119 1949180.286 0.00881022 0.010775524 5.69E-08 7.244876938 -0.042158148 SRQPS(ph)PLLLLPPPAGLTSDPGPSVR ddPTM_HeLa_CUDC101_4h_R1 1 SRQPSPLLLLPPPAGLTSDPGPSVR 25 1 I3L2J0 I3L2J0 CIC 1 0 S(0.328)RQPS(0.672)PLLLLPPPAGLTSDPGPSVR 50.158 0.019861 37089000 1308.4 960.81 990.59 1080.8 1177.7 999.96 1208.9 1071 1305.1 1398.6 TRUE FALSE FALSE 1155.031335 990.4114173 1044.144292 1124.879696 1090.823417 980.887429 1255.527678 1192.918311 1251.303226 1390.281065 0.830789805 0.712382152 0.751031081 0.809102363 0.784606397 0.705531747 0.903074716 0.858041112 0.900036156 1 10.44116086 -8.653748378 0.789447715 0.991283947 0.79077597 0.4588424 0.064880026 0.296042633 0.370000179 0.031055921 0.013494209 2.22E-09 8.653748378 -0.200507977 EVEVEVESMDK ddPTM_HeLa_CUDC101_4h_R1 3 EVEVEVESMDK 11 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 0 ;; ;; 236.35 3.06E-42 68249700 7031 6235.5 6412.6 5967.9 6719.7 6156.7 6371.4 6437.9 6749.5 6875.1 FALSE FALSE TRUE 6206.836838 6427.608364 6759.284553 6211.296757 6224.001119 6039.271205 6617.147032 7170.764513 6471.282753 6834.206599 0.908201522 0.940505422 0.989037199 0.90885411 0.910713047 0.883682856 0.968239244 1.049246084 0.94689598 1 12.73855815 -9.529923717 1.288900474 0.999996048 0.93844921 0 0.048792884 0.61412398 1.827048591 0.032975617 0.007885285 2.95E-10 9.529923717 -0.061546838 EVFEDAAEIR ddPTM_HeLa_CUDC101_4h_R1 4 EVFEDAAEIR 10 0 P19338;H7BY16 P19338 NCL Nucleolin 0 0 ;;; ;;; 162.88 0.00024104 269911000 19065 15699.2 16137 16230.3 17926.3 16714 16165.6 16791.6 17309.3 17222.2 FALSE FALSE TRUE 16830.2296 16182.87374 17009.41503 16892.24179 16603.91256 16395.2083 16789.11261 18703.08787 16595.80333 17119.76159 0.983087849 0.945274481 0.993554434 0.986710107 0.969868212 0.957677373 0.980686122 1.0924853 0.969394535 1 14.06337499 -4.260319834 24.93501086 0.9841663 1.092485335 0.794704704 0.017307415 34.65331721 771708.6772 0.002598984 0.021416629 5.49E-05 4.260319834 0.108319035 EVFEFRPELVNDDDEEADDTR ddPTM_HeLa_CUDC101_4h_R1 3 EVFEFRPELVNDDDEEADDTR 21 1 Q8WU90;Q8WU90-2 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 0 0 ;; ;; 265.38 7.52E-73 123034000 6024.1 5775.7 5671.45 5423.24 5554.56 5691.9 5388.16 4749 5667.6 7510.2 FALSE FALSE TRUE 5317.96413 5953.642471 5978.065742 5644.423168 5144.811175 5583.336491 5595.983136 5289.606964 5433.979129 7465.528996 0.712335875 0.797484341 0.800755813 0.75606473 0.689142213 0.747882232 0.749576238 0.708537462 0.727875966 1 12.86602878 -9.39472467 0.676889904 1.039179003 0.741785211 0 0.091270964 0.272363814 0.175630291 0.049360513 0.007770923 4.03E-10 9.39472467 -0.297393792 TPHDILEDINAS(ph)PEMR ddPTM_HeLa_CUDC101_4h_R1 2 TPHDILEDINASPEMR 16 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR ; 195.25 2.19E-16 46841000 2773.3 2231.4 2290.1 2295.75 2555.1 2619.9 2252.8 2318.6 2564 2586.4 TRUE FALSE FALSE 2448.217978 2300.146789 2413.909733 2389.380608 2366.615363 2569.929773 2339.691251 2582.540052 2458.310835 2571.015978 0.952237559 0.894645078 0.938893322 0.929352687 0.920498116 0.999577519 0.910025947 1.004482304 0.956163188 1 11.32812286 -8.650778866 0.937025033 0.995661382 0.942221002 0.087802741 0.035797303 0.453641415 0.803309185 0.013029321 0.006432461 2.23E-09 8.650778866 -0.053440379 EVGEHLVSIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EVGEHLVSIKK 11 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 1 ; EVGEHLVSIK(1)K;EVGEHLVSIK(1)K 118.28 0.001899 3974600 10165.9 3838.6 3400.8 3252.7 7093.3 7161.7 7621.8 6333.1 6695.6 7209.5 FALSE TRUE FALSE 8974.268613 3956.862716 3584.657535 3385.359165 6570.041391 7025.102505 7915.775379 7054.034505 6419.604534 7166.617573 1.252232105 0.552124161 0.500188199 0.472378933 0.916756242 0.980253576 1.104534363 0.984290627 0.895764908 1 12.80707666 -7.272712764 24.95481746 1.119109605 0.788680366 0.202016383 0.226308559 693.7884224 1535770.456 0.042704794 0.049061706 5.34E-08 7.272712764 -0.330429239 VSHYIINSSGPRPPVPPS(ph)PAQPPPGVSPSR ddPTM_HeLa_CUDC101_4h_R1 1 VSHYIINSSGPRPPVPPSPAQPPPGVSPSR 30 1 P46108;I3L297;P46108-2 P46108;P46108-2 CRK Adapter molecule crk 1 0 VSHYIINS(0.002)S(0.002)GPRPPVPPS(0.888)PAQPPPGVS(0.039)PS(0.068)R 56.335 0.0011749 19094000 881.69 631.29 638.22 607.29 882.55 742.02 812.7 610.24 922.84 1008.9 TRUE FALSE FALSE 778.3396348 650.7392966 672.7241037 632.0579111 817.4460448 727.8672048 844.0461112 679.7072549 884.8001446 1002.899018 0.776089737 0.648858245 0.670779502 0.630230861 0.815083104 0.725763204 0.84160628 0.677742467 0.882242508 1 9.969960633 -8.65061021 0.764052328 0.990161751 0.721711673 0.567676394 0.074132775 0.262033346 0.306331949 0.036547587 0.015530208 2.24E-09 8.65061021 -0.268450078 S(ph)RSAPPNLWAAQR ddPTM_HeLa_CUDC101_4h_R1 1 SRSAPPNLWAAQR 13 1 Q92934;F5H3B1;F5H1R6 Q92934 BAD Bcl2-associated agonist of cell death 1 0 S(0.665)RS(0.335)APPNLWAAQR 100.18 0.0053539 16056000 1407.3 851.27 1213.5 1446.8 1629.9 1485 1367.3 1276.8 1135.1 830.62 TRUE FALSE FALSE 1242.338427 877.4966197 1279.105481 1505.806758 1509.665524 1456.676099 1420.037219 1422.145751 1088.310698 825.6794353 1.504625614 1.062757024 1.549155067 1.823718375 1.828391819 1.764215066 1.719840847 1.72239454 1.318078967 1 9.689437963 -8.650059271 0.170077112 0.548002551 2.012689005 0.573101195 0.190305217 3.325826525 0.241688226 1.397201891 0.587525024 2.24E-09 8.650059271 1.464686454 EVGSIIGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 EVGSIIGKK 9 1 Q15366-2;Q15366;Q15366-3;Q15366-6;Q15366-5;Q15366-8;Q15366-4;F8W0G4;P57721;P57721-4;J3QT27;P57721-2;E9PFP8;P57721-5;P57721-3;Q15366-7;C9J0A4;C9K0A2;F8W1G6;C9JZY3;H3BSP4;F8VTZ0;F8WC71;C9J5V4;C9JSA6;C9J7A9;C9IZV9;C9JTY5;P57723-2;P57723;Q15365;H3BRU6;F8VZX2 Q15366-2;Q15365;H3BRU6 PCBP2;PCBP3;PCBP4;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 4;Poly(rC)-binding protein 1 0 1 EVGSIIGK(1)K 117.89 0.0017035 5471400 2134 1791.5 2187 1817.7 2387.2 2145 1809.9 2313.4 2052.5 2499.9 FALSE TRUE FALSE 1883.855755 1846.693992 2305.235835 1891.833663 2211.101012 2104.087699 1879.708449 2576.748105 1967.895081 2485.030484 0.758081548 0.743127299 0.927648916 0.761291934 0.889768164 0.846704985 0.756412632 1.036908047 0.791899775 1 11.27904783 -9.468108786 1.222725609 0.999424596 0.828274998 0 0.109188645 0.404598819 1.087881974 0.057433905 0.014349483 3.40E-10 9.468108786 -0.171149598 EVGVYEALKDDSWLK ddPTM_HeLa_CUDC101_4h_R1 2 EVGVYEALKDDSWLK 15 1 A0A5K1VW95;P40925-2;P40925;P40925-3;B8ZZ51;B9A041 A0A5K1VW95 MDH1 "Malate dehydrogenase, cytoplasmic" 0 0 ; ; 166.86 1.52E-05 47840000 4749.9 3864.3 3844.4 3595.6 4396.6 4237.5 3789.8 4344.4 4335.3 5469.4 FALSE FALSE TRUE 4193.123922 3983.354503 4052.239893 3742.24411 4072.271577 4156.676748 3935.973855 4838.948935 4156.597099 5436.867766 0.771238901 0.732656131 0.745326182 0.688308833 0.749010598 0.764535193 0.723941436 0.890025129 0.764520543 1 12.40856002 -8.961033267 0.688117038 1.008967316 0.750891165 0.012880917 0.087141641 0.270198443 0.226792959 0.038620091 0.010859638 1.09E-09 8.961033267 -0.258076151 AHSS(ph)PASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR ddPTM_HeLa_CUDC101_4h_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 AHS(0.457)S(0.496)PAS(0.043)LQLGAVS(0.002)PGT(0.001)LT(0.001)PTGVVSGPAATPTAQHLR 44.389 0.019449 37464000 590.53 518.56 430.17 330.35 427.52 507.86 615.44 570.49 523.88 643.2 TRUE FALSE FALSE 521.3089686 534.536219 453.4262914 343.8231009 395.9827013 498.1734167 639.177727 635.4322756 502.2854447 639.3742178 0.815342493 0.8360303 0.709171998 0.537749398 0.619328541 0.779157812 0.999692683 0.993834687 0.785589144 1 9.32051676 -8.649410087 0.749853453 0.991651781 0.775538176 0.006595879 0.15073399 0.725281065 0.815791407 0.081121217 0.034011934 2.24E-09 8.649410087 -0.216113605 FNDSEGDDT(ph)EETEDYR ddPTM_HeLa_CUDC101_4h_R1 3 FNDSEGDDTEETEDYR 16 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 FNDSEGDDT(1)EETEDYR;FNDS(0.425)EGDDT(0.537)EET(0.038)EDYR;FNDS(0.224)EGDDT(0.768)EET(0.008)EDYR ;; 302.9 1.87E-122 1889625000 2967.26 2598.02 2156.03 2408.5 2335.48 2985.49 2358.32 2316.02 2497.64 3064.38 TRUE FALSE FALSE 2619.442281 2678.061917 2272.591503 2506.72904 2163.196293 2928.546752 2449.281192 2579.666355 2394.686222 3046.152931 0.859918179 0.879162004 0.74605299 0.822916346 0.710140411 0.961391899 0.804057199 0.846860421 0.786134602 1 11.57277266 -8.649127845 0.59043736 1.00426205 0.820097585 0 0.091670448 0.50947402 0.345846789 0.045874815 0.01608515 2.24E-09 8.649127845 -0.184164465 VAASGAQDPEKS(ph)PDRLK ddPTM_HeLa_CUDC101_4h_R1 1 VAASGAQDPEKSPDRLK 17 2 Q1MSJ5-2;Q1MSJ5-1;Q1MSJ5 Q1MSJ5-2 CSPP1 Centrosome and spindle pole-associated protein 1 1 0 VAASGAQDPEKS(1)PDRLK 80.382 0.010171 22411000 3320.1 2904.8 3161.9 3152.1 2963.1 3030.1 2386.5 2884.1 2923.4 2675.7 TRUE FALSE FALSE 2930.922911 2994.293445 3332.841878 3280.656263 2744.518016 2972.305891 2478.548104 3212.414286 2802.896215 2659.784817 1.101939861 1.125765297 1.253049441 1.233429201 1.031857163 1.117498631 0.931860385 1.207772247 1.05380563 1 11.37709382 -8.648432499 0.881207674 1.008237582 1.122745416 0.149829137 0.09152905 0.66303487 1.038011842 0.040373772 0.019132951 2.25E-09 8.648432499 0.114507834 KSDASDMNSDTS(ph)PSCR ddPTM_HeLa_CUDC101_4h_R1 3 KSDASDMNSDTSPSCR 16 1 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 KSDASDMNS(0.006)DT(0.148)S(0.605)PS(0.241)CR;KSDASDMNS(0.001)DT(0.048)S(0.785)PS(0.166)CR;KSDASDMNS(0.001)DT(0.152)S(0.795)PS(0.052)CR ;; 118.54 0.00058244 41897000 17616.3 17002.6 15615.9 14753 16542.9 13588.6 14635.4 17688.9 15751 13962.8 TRUE FALSE FALSE 15551.34402 17526.42995 16460.14279 15354.69111 15322.56323 13329.4201 15199.89228 19702.53288 15101.73711 13879.74864 1.120434124 1.262733959 1.185910726 1.106265791 1.10395106 0.960350251 1.095112935 1.419516547 1.088041109 1 13.76069382 -8.648432423 0.894206887 1.009681622 1.147539541 0.110783956 0.117164254 0.67699592 1.091645953 0.049745288 0.023821482 2.25E-09 8.648432423 0.137857919 SSSVLS(ph)LEGSEK ddPTM_HeLa_CUDC101_4h_R1 2 SSSVLSLEGSEK 12 0 A1L390-3;A1L390;G3V311;A1L390-2;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 SSS(0.021)VLS(0.979)LEGSEK;S(0.002)SS(0.055)VLS(0.937)LEGS(0.005)EK ; 205.96 3.00E-23 81428000 6587.8 6085.7 5407.1 5366.7 6257.4 5165.1 5339.8 5512.8 6296.1 6375.7 TRUE FALSE FALSE 5815.58807 6273.193204 5699.424182 5585.577223 5795.804068 5066.584323 5545.757875 6140.354868 6036.572093 6337.777053 0.917606918 0.9898097 0.899278112 0.88131488 0.914485319 0.799426089 0.875032023 0.968849932 0.952474668 1 12.62976119 -8.644872257 0.271682873 1.032890063 0.87466262 0.284182279 0.048776138 2.386990986 0.350499581 0.133459654 0.042997891 2.27E-09 8.644872257 -0.158227444 EVLDEDTDEEKETLK ddPTM_HeLa_CUDC101_4h_R1 1 EVLDEDTDEEKETLK 15 1 Q9Y3P9 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 0 0 162.31 5.98E-05 8488000 1664.3 1250.9 1048.8 972.32 896.54 1185.4 1162.6 1327.1 1420.1 1192.6 FALSE FALSE TRUE 1469.213277 1289.438746 1105.5013 1011.975412 830.4040304 1162.79047 1207.441871 1478.1717 1361.562877 1185.506362 1.239312857 1.087669191 0.932514017 0.853622928 0.70046358 0.980838659 1.018503072 1.246869479 1.14850744 1 10.21128769 -6.808975338 5.379148087 1.115156577 0.943098777 0.244468901 0.14016413 0.234982156 15.20515139 0.025864499 0.034571361 1.55E-07 6.808975338 -0.1720578 EVLEGLDYLHR ddPTM_HeLa_CUDC101_4h_R1 2 EVLEGLDYLHR 11 0 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 0 0 ; ; 150.09 4.79E-06 2296600 5429.1 4354.5 4099 3962 4347.9 4437.8 4068.9 4015.5 4450.8 5595.4 FALSE FALSE TRUE 4792.709128 4488.656984 4320.604339 4123.587485 4027.164079 4353.156359 4225.838836 4472.608289 4267.33614 5562.118312 0.861669756 0.807004945 0.776791161 0.74136997 0.724034235 0.782643611 0.759753497 0.804119589 0.767214198 1 12.44141872 -8.00885859 0.558443776 0.993963887 0.755589341 0.052338762 0.073206354 0.143886075 0.104354732 0.013971502 0.008797629 9.80E-09 8.00885859 -0.238374547 EVLEYNAIGGK(ac)YNR ddPTM_HeLa_CUDC101_4h_R1 1 EVLEYNAIGGKYNR 14 1 A0A087X1D8;A0A087WVN4;P14324-2;P14324 A0A087X1D8 FDPS Farnesyl pyrophosphate synthase 0 1 EVLEYNAIGGK(1)YNR 158.34 1.08E-11 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 EVLLFPAMK(ac)PEDKK ddPTM_HeLa_CUDC101_4h_R1 1 EVLLFPAMKPEDKK 14 2 Q15046;Q15046-2 Q15046 KARS Lysine--tRNA ligase 0 1 EVLLFPAMK(0.983)PEDK(0.017)K 65.219 0.030245 313440 175.34 0 0 0 0 0 145.89 0 137.65 202.43 FALSE TRUE FALSE 154.786911 0 0 0 0 0 151.5170262 0 131.9760087 201.2259374 0.769219481 0 0 0 0 0 0.752969663 0 0.655859828 1 7.652672466 -7.35808351 3.980626216 0.90140286 0.115779635 0.642750457 0.237493318 0.0926381 2.592360723 0.041069092 0.046815857 4.38E-08 7.35808351 -0.785623225 SDASSPTISPAS(ph)SP ddPTM_HeLa_CUDC101_4h_R1 1 SDASSPTISPASSP 14 0 H0YK05;A0A087X1K6;Q9Y2Y9 H0YK05 KLF13 Krueppel-like factor 13 1 0 SDASSPTISPAS(0.5)S(0.5)P 105.25 0.0011054 0 1537.5 1272.9 1044.1 1186 1376.1 1354.4 1304.8 1199.7 1598.3 1679.3 TRUE FALSE FALSE 1357.276581 1312.11654 1100.547204 1234.370206 1274.587845 1328.567077 1355.126573 1336.268999 1532.417398 1669.311449 0.813075704 0.786022609 0.659282128 0.739448715 0.763541067 0.795877293 0.811787743 0.800491124 0.917993702 1 10.70503743 -8.644275987 0.682385236 0.99715955 0.764304283 0.705844908 0.048046023 0.244484847 0.226105224 0.02885351 0.011302764 2.27E-09 8.644275987 -0.232855267 LGPGRPLPTFPTSECTS(ph)DVEPDTR ddPTM_HeLa_CUDC101_4h_R1 1 LGPGRPLPTFPTSECTSDVEPDTR 24 1 Q8TDD1-2;Q8TDD1;H0YHZ9 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 LGPGRPLPTFPT(0.004)S(0.014)ECT(0.182)S(0.798)DVEPDT(0.001)R 86.439 3.36E-05 33278000 569.26 552.52 581.85 604.66 448.82 690.33 386.2 537.49 468.01 309.23 TRUE FALSE FALSE 502.5322057 569.5424863 613.306571 629.3206484 415.7114428 677.1631054 401.0958634 598.675689 448.7184297 307.3906862 1.634832245 1.852829353 1.995202192 2.047299013 1.352387894 2.202939568 1.304840652 1.947605168 1.459765861 1 8.263929642 -8.641979189 0.683472859 1.009085744 1.806462537 0.323851444 0.304380758 0.378227534 0.351215789 0.15280734 0.060068392 2.28E-09 8.641979189 0.797376793 QEPLEEDS(ph)PSSSSAGLDK ddPTM_HeLa_CUDC101_4h_R1 4 QEPLEEDSPSSSSAGLDK 18 0 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 QEPLEEDS(0.646)PS(0.081)S(0.081)S(0.154)S(0.039)AGLDK;QEPLEEDS(0.999)PS(0.001)SSSAGLDK;QEPLEEDS(0.886)PS(0.083)S(0.026)S(0.005)S(0.001)AGLDK;QEPLEEDS(0.875)PS(0.109)S(0.014)S(0.002)SAGLDK ;;; 216.65 1.00E-24 172755000 10421.5 9022.2 8020.11 7957.59 10400 9062.4 8931 8476.79 10364.9 9986.5 TRUE FALSE FALSE 9199.907568 9300.163288 8453.701406 8282.134916 9632.81272 8889.549819 9275.471662 9441.753509 9937.654435 9927.099854 0.926746754 0.936845949 0.851578158 0.834295518 0.970355175 0.895483067 0.934358654 0.951108949 1.001063209 1 13.27715659 -8.641261368 0.716249605 0.99761114 0.909347395 0.431206526 0.040333665 0.511084768 0.523649708 0.023078351 0.009411621 2.28E-09 8.641261368 -0.088263745 S(ph)RS(ph)PESQVIGENTK ddPTM_HeLa_CUDC101_4h_R1 1 SRSPESQVIGENTK 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 S(0.997)RS(0.502)PES(0.501)QVIGENTK 118.2 0.019676 58751000 5210.7 3974.4 4164.8 4102.8 4039.3 4347.2 3892.9 3435 4726.8 5799.8 TRUE FALSE FALSE 4599.909645 4096.846553 4389.961686 4270.129918 3741.328886 4264.284403 4043.050457 3826.026515 4531.959303 5765.302532 0.797860931 0.710603916 0.761445156 0.740660164 0.648938866 0.739646251 0.701272905 0.663629791 0.786074847 1 12.4931806 -8.638043736 0.356542714 1.062599165 0.678654578 0.396165836 0.072798304 0.32341935 0.077802685 0.049838044 0.01497155 2.30E-09 8.638043736 -0.383944587 NLQDGQISDTGDLGEDIAS(ph)N ddPTM_HeLa_CUDC101_4h_R1 2 NLQDGQISDTGDLGEDIASN 20 0 H0YHT2;A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-3;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;H0YI78 H0YHT2 KIF21A Kinesin-like protein KIF21A 1 0 NLQDGQISDT(0.001)GDLGEDIAS(0.999)N;NLQDGQISDTGDLGEDIAS(1)N ; 105.92 0.00021382 16766400 4820 4043.6 3874.7 3734.6 4719.5 4451.9 3931.5 4161.9 4581.8 4456.1 TRUE FALSE FALSE 4255.006907 4168.178523 4084.178002 3886.91313 4371.351888 4366.987425 4083.139272 4635.673873 4392.936265 4429.594919 0.960586009 0.94098413 0.922020654 0.877487265 0.986851387 0.98586609 0.921786156 1.046523205 0.991724152 1 12.11295906 -8.638027733 0.921082484 0.99639186 0.952487264 0.118515669 0.043474351 0.753066788 1.290624668 0.017635148 0.008696897 2.30E-09 8.638027733 -0.043904596 LIRGPGENGDDS(ph) ddPTM_HeLa_CUDC101_4h_R1 1 LIRGPGENGDDS 12 1 Q6IBS0 Q6IBS0 TWF2 Twinfilin-2 1 0 LIRGPGENGDDS(1) 107.93 0.031359 8688500 3159.9 3110.7 2894.9 2939.4 4636 3334.5 3361.4 3871.7 3375.4 1608.1 TRUE FALSE FALSE 2789.501312 3206.53698 3051.407051 3059.281437 4294.011516 3270.899968 3491.050324 4312.438678 3236.264583 1598.53495 1.745036174 2.005922348 1.908877282 1.913803285 2.686216849 2.046186084 2.18390616 2.697744381 2.024519129 1 10.64253457 -8.636997174 0.152331547 3.24E-19 2.946392239 0.277507868 0.386777603 2.521585258 0.160071886 2.050012132 0.931245593 2.31E-09 8.636997174 2.946392239 QS(ph)PEPSPVTLGR ddPTM_HeLa_CUDC101_4h_R1 1 QSPEPSPVTLGR 12 0 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 QS(0.973)PEPS(0.027)PVTLGR 104.9 0.0010228 0 1415.9 1139.5 819.89 1476.6 1058.4 1179.3 1169 1130.8 1268.7 1556.3 TRUE FALSE FALSE 1249.930348 1174.606644 864.2157334 1536.82213 980.3239406 1156.806817 1214.088722 1259.525701 1216.403649 1547.043058 0.807948002 0.75925918 0.558624228 0.993393249 0.633675925 0.747753471 0.784780175 0.814150385 0.786276531 1 10.59529764 -8.635557643 0.685770913 0.996948302 0.755018024 0.061590587 0.125221976 0.487495899 0.456776174 0.059690025 0.023673754 2.31E-09 8.635557643 -0.241930278 AASSQTPT(ph)MCT(ph)TT(ph)VTVK ddPTM_HeLa_CUDC101_4h_R1 1 AASSQTPTMCTTTVTVK 17 0 Q08554-2;Q08554 Q08554-2 DSC1 Desmocollin-1 3 0 AAS(0.243)S(0.246)QT(0.255)PT(0.312)MCT(0.766)T(0.298)T(0.772)VT(0.108)VK 60.255 0.0024838 0 1021.2 824.75 849.76 740.78 681.44 796.29 802.35 804.53 943.73 1214.4 TRUE FALSE FALSE 901.496484 850.1595699 895.700596 770.9922103 631.1715288 781.102095 833.2969083 896.1144432 904.82905 1207.176695 0.746780888 0.704254459 0.741979695 0.638673869 0.522849332 0.647048687 0.690285782 0.742322518 0.749541516 1 10.23742114 -8.635337121 0.453813524 1.036046991 0.646104414 0.317260633 0.095248291 0.395882756 0.154745236 0.068731891 0.021313506 2.32E-09 8.635337121 -0.389942578 ATSDTLES(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 3 ATSDTLESPPK 11 0 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 ATSDT(0.002)LES(0.998)PPK;AT(0.001)SDT(0.07)LES(0.93)PPK;ATSDT(0.1)LES(0.9)PPK ;; 173.04 6.52E-07 45716000 13625.2 10685.6 9951.1 9036.3 8656.7 8541.7 6092.6 3881.9 11725 13117 TRUE FALSE FALSE 12028.07471 11014.81067 10489.08657 9404.839372 8018.112488 8378.781304 6327.593623 4323.799805 11241.69054 13038.9795 0.922470559 0.84476018 0.804440759 0.72128646 0.614934051 0.642594867 0.485282888 0.331605691 0.862160305 1 13.67054334 -4.663041088 0.326590382 1.00438585 2.46E-19 0.926950989 0.053044773 0.553393429 0.051226031 0.013802321 0.212072169 2.17E-05 4.663041088 -1.00438585 down EVPAVPETLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EVPAVPETLKK 11 1 P18124 P18124 RPL7 60S ribosomal protein L7 0 1 ; EVPAVPETLK(1)K;EVPAVPETLK(1)K 157.78 0.0001248 5486800 8073.3 3421.5 3462.2 3211.9 7441 6799.7 7133.1 6411.9 6914.8 4990.5 FALSE TRUE FALSE 7126.960012 3526.91236 3649.377005 3342.895165 6892.092255 6670.007052 7408.226056 7141.804778 6629.769017 4960.816284 1.436650665 0.710954036 0.735640426 0.6738599 1.389306086 1.344538211 1.493348198 1.439643069 1.336427039 1 12.27636181 -5.561283721 24.9829988 1.094616633 1.421649388 0.368212832 0.254739007 191.05621 124284.3028 0.044601237 0.089202597 2.75E-06 5.561283721 0.327032754 (ac)MNLLPNIES(ph)PVTR ddPTM_HeLa_CUDC101_4h_R1 3 MNLLPNIESPVTR 13 0 E9PM69;P17980 E9PM69 PSMC3 26S protease regulatory subunit 6A 1 0 MNLLPNIES(0.961)PVT(0.039)R;MNLLPNIES(0.914)PVT(0.086)R;MNLLPNIES(0.959)PVT(0.041)R ;; 164.93 7.65E-11 28653500 413.158 207.362 429.19 127.23 156.52 243.978 386.536 302.347 593.73 671.61 TRUE FALSE FALSE 364.7282455 213.7505774 452.3933096 132.4189893 144.9738314 239.3245261 401.444823 336.7649604 569.2561981 667.6152339 0.546315044 0.320170312 0.677625804 0.198346267 0.217151773 0.35847673 0.601311658 0.504429712 0.852671073 1 9.382873065 -8.632153908 0.565866052 1.022239065 0.39604472 0.63191063 0.152773373 0.391797995 0.24456847 0.118038767 0.040962868 2.33E-09 8.632153908 -0.626194345 LFSLS(ph)NPSLSTTNLSGPSR ddPTM_HeLa_CUDC101_4h_R1 1 LFSLSNPSLSTTNLSGPSR 19 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 LFS(0.053)LS(0.876)NPS(0.034)LS(0.011)T(0.011)T(0.004)NLS(0.011)GPSR 80.459 0.0062482 71148000 755.55 658.61 469.76 594.17 661.56 687.11 559.39 499.87 549.29 864.75 TRUE FALSE FALSE 666.9855743 678.9009935 495.1566465 618.4028208 612.7580368 674.0045216 580.9658597 556.7731803 526.6480337 859.6064285 0.775919714 0.789781196 0.576027156 0.719402276 0.712835568 0.784085017 0.675850995 0.647707092 0.612661814 1 9.747532462 -8.631473196 0.478675789 1.027078385 0.688231961 0 0.132643525 0.385498153 0.16879266 0.059351671 0.01885155 2.34E-09 8.631473196 -0.338846424 YLDEDTIYHLQPS(ph)GR ddPTM_HeLa_CUDC101_4h_R1 1 YLDEDTIYHLQPSGR 15 0 P31153-2;P31153 P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 1 0 YLDEDTIYHLQPS(1)GR 98.552 0.00074273 0 1125.7 994.67 779.98 881.27 1000.8 857.97 867.73 727.52 1139.2 1217.1 TRUE FALSE FALSE 993.7471525 1025.314604 822.1480781 917.2119998 926.9729779 841.6056517 901.1986368 810.3379361 1092.241694 1209.860635 0.821373242 0.84746505 0.679539489 0.758113764 0.766181617 0.695621981 0.744878055 0.669777917 0.902783066 1 10.24062516 -8.631460099 0.260668504 1.100161586 0.675679115 0.760484199 0.049005962 0.768034883 0.106166529 0.113243144 0.037651757 2.34E-09 8.631460099 -0.424482471 S(ph)RS(ph)PHEAGFCVYLK ddPTM_HeLa_CUDC101_4h_R1 2 SRSPHEAGFCVYLK 14 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 2 0 S(1)RS(1)PHEAGFCVYLK;S(1)RS(1)PHEAGFCVYLK ; 78.763 0.03179 58921000 5895.2 5887.1 5672.9 5438.6 5582 5429.1 5145 4726.4 5502.7 3952.8 TRUE FALSE FALSE 5204.173593 6068.474573 5979.594134 5660.409616 5170.226981 5325.548963 5343.444373 5264.434271 5275.876377 3929.28857 1.32445696 1.544420692 1.52180071 1.44056857 1.315817581 1.35534687 1.359901234 1.339793242 1.342705246 1 11.94005241 -8.630042448 0.799883163 1.019035522 1.405089099 0.209771667 0.125691588 0.215353765 0.277908324 0.043236295 0.0193918 2.34E-09 8.630042448 0.386053577 EVQAEIGK(ac)LR ddPTM_HeLa_CUDC101_4h_R1 2 EVQAEIGKLR 10 1 H3BP71;O75150-3;O75150-4;O75150 H3BP71 RNF40 E3 ubiquitin-protein ligase BRE1B 0 1 ; EVQAEIGK(1)LR;EVQAEIGK(1)LR 113.44 0.0048515 2328400 1197.21 1185.43 1038.15 1108.89 1550.48 961.24 1076.9 861.28 1355.51 1036.18 FALSE TRUE FALSE 1056.874859 1221.951693 1094.275529 1154.115327 1436.104179 942.9059485 1118.436394 959.3246338 1299.635304 1030.016755 1.026075404 1.186341569 1.062386144 1.120482091 1.394253222 0.915427777 1.085842913 0.931367989 1.261761323 1 10.00845209 -7.470655548 13.75263131 1.011496657 1.102833243 0 0.14880225 4.485440869 1180.339163 0.020866561 0.023743016 3.38E-08 7.470655548 0.091336586 SLSSS(ph)PQAQPPRPAELSDEEVAELFQR ddPTM_HeLa_CUDC101_4h_R1 1 SLSSSPQAQPPRPAELSDEEVAELFQR 27 1 A0A087WXA6;A0A087WT45;Q4V328-4;Q4V328 A0A087WXA6 GRIPAP1 GRIP1-associated protein 1 1 0 S(0.014)LS(0.119)S(0.119)S(0.727)PQAQPPRPAELS(0.022)DEEVAELFQR 76.351 5.88E-05 140250000 479.13 404.66 401.14 467.5 601.79 457.89 373.24 286.54 680.02 357.96 TRUE FALSE FALSE 422.9671077 417.127095 422.8268418 486.5666707 557.3971506 449.1565111 387.6359918 319.1585554 651.9892878 355.830838 1.188674681 1.172262352 1.188280488 1.367410069 1.566466678 1.262275394 1.089382792 0.896938998 1.832301246 1 8.475047737 -8.62970849 0.650947936 1.002003254 1.235382016 0 0.30624523 0.952861108 0.801560107 0.111046917 0.042593282 2.35E-09 8.62970849 0.233378763 IEVDEGFCS(ph)PKPSEIKDFSYVYKPENCQILVGCSMFAPLK ddPTM_HeLa_CUDC101_4h_R1 1 IEVDEGFCSPKPSEIKDFSYVYKPENCQILVGCSMFAPLK 40 3 Q9UHV7 Q9UHV7 MED13 Mediator of RNA polymerase II transcription subunit 13 1 0 IEVDEGFCS(0.597)PKPS(0.102)EIKDFS(0.102)Y(0.098)VY(0.098)KPENCQILVGCS(0.001)MFAPLK 43.271 0.0076273 14828000 442.47 446.23 423.7 513.11 567.45 416.63 411.04 534.68 432.89 136.67 TRUE FALSE FALSE 390.6043373 459.9778174 446.6065036 534.0368437 525.590344 408.6834769 426.8939505 595.5458099 415.046091 135.8570808 2.875112104 3.385747837 3.287325925 3.93087236 3.86870041 3.008186799 3.142228201 4.383619953 3.055019942 1 7.085945949 -8.628732315 0.449835739 0.7083622 3.690524163 0.275649553 0.733651553 0.326427316 0.125712711 0.431702569 0.134441992 2.35E-09 8.628732315 2.982161963 (ac)SVCTLSVPVSSLS(ph)PGRR ddPTM_HeLa_CUDC101_4h_R1 1 SVCTLSVPVSSLSPGRR 17 1 P86452 P86452 ZBED6 Zinc finger BED domain-containing protein 6 1 0 SVCTLSVPVS(0.219)S(0.158)LS(0.623)PGRR 127.29 6.00E-08 10943000 281.74 150.17 162.16 326.29 215.39 222.53 258.47 201.28 268.73 335.71 TRUE FALSE FALSE 248.7148643 154.7965597 170.9268601 339.5975165 199.5011088 218.285611 268.4392745 224.1929016 257.6528357 333.713182 0.745295295 0.463861088 0.512196908 1.01763291 0.597822081 0.654111443 0.804401171 0.671813143 0.772078688 1 8.382464865 -8.627532237 0.897281453 0.978429519 0.685093763 0.156700424 0.161081489 0.407136122 0.663084844 0.06318894 0.030875017 2.36E-09 8.627532237 -0.293335756 EVQMGDFVR ddPTM_HeLa_CUDC101_4h_R1 1 EVQMGDFVR 9 0 Q96AY3;K7EM43;K7ELI6 Q96AY3 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10;Peptidyl-prolyl cis-trans isomerase 0 0 127.46 0.01901 17607000 1756.9 1574.8 1102.8 1486.5 1711.4 1426 1347.6 1499.7 1937.9 1509.7 FALSE FALSE TRUE 1550.958845 1623.317721 1162.420704 1547.125895 1585.153432 1398.801426 1399.577383 1670.419786 1858.018942 1500.720237 1.033476331 1.081692431 0.774575217 1.030922258 1.056261782 0.932086735 0.932603792 1.113078737 1.238084818 1 10.55143934 EVQQGEEFER ddPTM_HeLa_CUDC101_4h_R1 1 EVQQGEEFER 10 0 P00568;Q5T9B7;H0YID2 P00568 AK1 Adenylate kinase isoenzyme 1 0 0 132.32 0.011286 10596000 1067.5 999.5 857.06 803.33 831.78 569.51 984.51 778.15 845.7 969.6 FALSE FALSE TRUE 942.3692682 1030.29341 903.3952561 836.0932697 770.4212465 558.6475456 1022.48288 866.7314506 810.839888 963.8327761 0.977731087 1.068954528 0.9372946 0.867467148 0.799330823 0.579610446 1.060850913 0.899255008 0.841266149 1 9.912639052 -6.325816827 2.875035162 0.995226285 0.834058449 0.194489616 0.123400248 0.25469191 4.145320954 0.017609585 0.028618129 4.72E-07 6.325816827 -0.161167836 EVQQGEEFERR ddPTM_HeLa_CUDC101_4h_R1 2 EVQQGEEFERR 11 1 P00568;Q5T9B7;H0YID2 P00568 AK1 Adenylate kinase isoenzyme 1 0 0 ; ; 92.856 0.021875 57090000 3862.8 3504.4 3876.9 3980.2 3893.2 3512.9 3256.5 3953.8 3807.6 3814.5 FALSE FALSE TRUE 3410.00844 3612.36641 4086.496941 4142.52976 3606.006392 3445.897285 3382.104296 4403.88461 3650.649116 3791.811184 0.899308608 0.952675709 1.077716358 1.092493681 0.950998406 0.908773438 0.891949554 1.161419806 0.962771863 1 11.88867141 -6.939674692 24.99958369 0.951058103 1.005194301 0.10847222 0.082192531 148.5611449 61564.74848 0.014078473 0.018502738 1.15E-07 6.939674692 0.054136198 EVQQK(ac)IEK ddPTM_HeLa_CUDC101_4h_R1 2 EVQQKIEK 8 1 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 0 1 ; EVQQK(1)IEK;EVQQK(1)IEK 171.56 0.0029276 7716500 4594.2 4892.6 4218.3 4674.6 4274.4 4579.4 4073.4 4076.1 3042.3 2873.1 FALSE TRUE FALSE 4055.67484 5043.335207 4446.354058 4865.250393 3959.086028 4492.055575 4230.512402 4540.106748 2916.895106 2856.010673 1.420048909 1.765867072 1.556840841 1.703512679 1.386229423 1.572842713 1.481266314 1.58966729 1.021317999 1 11.47978566 -8.498599229 0.743462443 1.024715528 1.570712722 0.797719742 0.110374681 0.202441782 0.231690371 0.054346648 0.025997397 3.17E-09 8.498599229 0.545997195 QNPEQS(ph)ADEDAEK ddPTM_HeLa_CUDC101_4h_R1 2 QNPEQSADEDAEK 13 0 Q99613-2;Q99613;B5ME19;H3BPE3 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 1 0 QNPEQS(1)ADEDAEK;QNPEQS(1)ADEDAEK ; 171.15 4.47E-07 20830200 3218.4 2635.6 1707.21 1815.61 2052.08 2454.5 1773.51 1587.96 2322.6 5044.6 TRUE FALSE FALSE 2841.144031 2716.799712 1799.506937 1889.658424 1900.702147 2407.684502 1841.914875 1768.726948 2226.861445 5014.594495 0.566575031 0.541778546 0.358853929 0.376831751 0.379034067 0.480135434 0.367310832 0.352715848 0.444076076 1 12.29191733 -8.62698041 0.406439279 1.090107269 0.360270137 0.092820986 0.177414224 0.217332062 0.0680807 0.067458946 0.020569251 2.36E-09 8.62698041 -0.729837132 STGHT(ph)PTKPSGSSVSEK ddPTM_HeLa_CUDC101_4h_R1 1 STGHTPTKPSGSSVSEK 17 1 Q8NI08-2;Q8NI08;Q8NI08-7 Q8NI08-2 NCOA7 Nuclear receptor coactivator 7 1 0 S(0.061)T(0.061)GHT(0.707)PT(0.168)KPS(0.002)GSSVSEK 54.953 0.038262 27444000 3759.2 2784 3212.9 2763.8 4311 3109.1 3240.7 2989.1 3818.3 3542.6 TRUE FALSE FALSE 3318.552275 2869.77174 3386.599092 2876.51971 3992.986119 3049.799098 3365.694885 3329.367062 3660.908058 3521.528458 0.94236134 0.814922206 0.961684431 0.816838411 1.133878703 0.866044144 0.955748314 0.945432389 1.039579291 1 11.78198603 -8.625994358 1.100901305 0.992843995 0.930456442 0.129619796 0.087296595 0.82237893 2.009653282 0.02806878 0.015587271 2.37E-09 8.625994358 -0.062387553 DPTSLLGVLQAEADS(ph)TSEGLEDAVHSR ddPTM_HeLa_CUDC101_4h_R1 1 DPTSLLGVLQAEADSTSEGLEDAVHSR 27 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 DPTSLLGVLQAEADS(0.591)T(0.168)S(0.241)EGLEDAVHSR 122.7 1.21E-10 33742000 424.52 265.47 334.57 373.57 268.65 457.69 295.3 232 405.61 506.04 TRUE FALSE FALSE 374.7584091 273.648816 352.6578662 388.8057993 248.8322247 448.9603258 306.6898199 258.4099422 388.8905841 503.0300516 0.745002029 0.54400093 0.701067193 0.772927578 0.494666718 0.892511937 0.609684887 0.513706768 0.773096126 1 8.974500781 -8.624939778 0.552418682 1.017355771 0.647000543 0.258113276 0.135885408 0.510799279 0.303853623 0.090225277 0.031079236 2.37E-09 8.624939778 -0.370355229 HEGGRDPPASHAVPNTPHRS(ph)PPSDVR ddPTM_HeLa_CUDC101_4h_R1 1 HEGGRDPPASHAVPNTPHRSPPSDVR 26 2 I3L229;H7C0J3 I3L229 CHD3 1 0 HEGGRDPPAS(0.001)HAVPNT(0.403)PHRS(0.478)PPS(0.119)DVR 44.632 0.023566 4933200 990 1022.2 907.62 860.36 1121 695.48 866.2 762.54 801.25 732.39 TRUE FALSE FALSE 873.9537007 1053.69277 956.6886826 895.4491996 1038.306063 682.2148777 899.6096242 849.3444713 768.2221359 728.0337117 1.200430264 1.447313158 1.314071955 1.229955681 1.42617855 0.937064956 1.235670285 1.166627943 1.055201323 1 9.507861446 -8.624214447 0.961349539 1.020093116 1.245020739 0.285468233 0.135959943 0.446621125 0.835012199 0.053658223 0.027534529 2.38E-09 8.624214447 0.224927623 LKSPS(ph)QKQDGGTAPVASASPK ddPTM_HeLa_CUDC101_4h_R1 1 LKSPSQKQDGGTAPVASASPK 21 2 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 LKS(0.205)PS(0.772)QKQDGGT(0.02)APVAS(0.002)ASPK 70.295 0.0039407 27576000 2865.6 2808.1 2797.2 2702.5 3498.5 2599.8 2643.6 1846.2 2962.1 1659.8 TRUE FALSE FALSE 2529.698712 2894.614233 2948.425093 2812.719631 3240.422625 2550.213147 2745.564538 2056.363945 2840.000984 1649.927436 1.533218163 1.754388811 1.787002888 1.704753537 1.963978872 1.5456517 1.66405169 1.246335991 1.721288417 1 10.68818686 -8.622527098 0.713740867 1.01648118 1.676765067 0 0.279715042 0.299316217 0.30601485 0.100455541 0.041600865 2.38E-09 8.622527098 0.660283887 IT(ph)ILGSPS(ph)MGVYLS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 ITILGSPSMGVYLSR 15 0 Q9UK61-3;Q9UK61;Q9UK61-4 Q9UK61-3 FAM208A Protein FAM208A 3 0 IT(0.999)ILGS(0.007)PS(0.829)MGVY(0.292)LS(0.873)R 52.167 0.037703 3716200 1364.7 1333.5 1230.9 1054.1 1231.1 1046.4 1463.3 1066.1 1268.6 1098.6 TRUE FALSE FALSE 1204.731935 1374.583554 1297.446177 1097.090754 1140.284206 1026.441663 1519.739971 1187.460515 1216.307771 1092.065478 1.103168224 1.258700675 1.188066286 1.004601625 1.044153696 0.939908535 1.391619826 1.087352854 1.113768172 1 10.09284364 -8.621483272 0.966168754 1.010363305 1.127140652 0.020698221 0.126910595 0.772895001 1.459878957 0.048197131 0.02486606 2.39E-09 8.621483272 0.116777347 PWS(ph)ST(ph)DS(ph)DGS(ph)VRSMR ddPTM_HeLa_CUDC101_4h_R1 1 PWSSTDSDGSVRSMR 15 1 Q9Y2K5-2;H7C0E9;A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H0YIX9 Q9Y2K5-2;H0YIX9 R3HDM2 R3H domain-containing protein 2 4 0 PWS(0.501)S(0.508)T(0.991)DS(0.97)DGS(0.994)VRS(0.035)MR 48.823 0.033604 14210000 1737.1 1401.5 1393.5 1301.6 1468.2 1230.9 1269.9 1343 1604.6 1974.7 TRUE FALSE FALSE 1533.479771 1444.678554 1468.836825 1354.684874 1359.893811 1207.422633 1318.880468 1495.881691 1538.457709 1962.954397 0.781210085 0.735971532 0.748278629 0.690125495 0.692779116 0.615104781 0.671885435 0.762056263 0.783746027 1 10.93881094 -8.621202664 0.381691326 1.05317815 0.669496102 0.407401485 0.075456625 0.339977494 0.094280967 0.053993269 0.016476392 2.39E-09 8.621202664 -0.383682048 PLPS(ph)S(ph)MQLAVIR ddPTM_HeLa_CUDC101_4h_R1 1 PLPSSMQLAVIR 12 0 Q5H8C1-3;Q5H8C1-2;Q5H8C1 Q5H8C1-3 FREM1 FRAS1-related extracellular matrix protein 1 2 0 PLPS(1)S(1)MQLAVIR 107.39 0.035306 5007600 706.39 539.81 539.57 597.82 669.03 621.48 518.55 523.5 599.15 737.11 TRUE FALSE FALSE 623.588035 556.4409063 568.7407863 622.2016836 619.6769898 609.6263045 538.5506472 583.0931239 574.4527834 732.7256369 0.851052568 0.759412361 0.776198836 0.849160521 0.845714901 0.831998055 0.734996321 0.795786437 0.783994383 1 9.517129284 -8.620119808 0.579078185 1.006840135 0.797251708 0 0.075617525 0.298425182 0.196614914 0.030225431 0.010781543 2.40E-09 8.620119808 -0.209588428 DS(ph)RPLSPILHIVK ddPTM_HeLa_CUDC101_4h_R1 1 DSRPLSPILHIVK 13 1 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 1 0 DS(0.831)RPLS(0.169)PILHIVK 63.681 0.038591 20015000 3877 3880.4 3365.6 3288.6 4070.6 3738.9 3549.8 3419.6 3298.2 2683.3 TRUE FALSE FALSE 3422.543937 3999.950525 3547.554516 3422.723323 3770.319948 3667.586712 3686.716975 3808.873442 3162.2468 2667.339612 1.283130173 1.499603015 1.329997313 1.283197425 1.413513274 1.37499803 1.382170069 1.427967186 1.185543373 1 11.38118581 -8.617348394 0.556583194 0.982314053 1.391260782 0.636647869 0.081499298 0.253046929 0.15343809 0.049400086 0.017231754 2.41E-09 8.617348394 0.40894673 NKDSGSDTASAIIPSTTPSVDS(ph)DDESVVKDK ddPTM_HeLa_CUDC101_4h_R1 1 NKDSGSDTASAIIPSTTPSVDSDDESVVKDK 31 2 Q6WKZ4;E7EX40;Q6WKZ4-2;Q6WKZ4-3 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 0 NKDSGSDTASAIIPS(0.003)T(0.003)T(0.003)PS(0.255)VDS(0.721)DDES(0.015)VVKDK 100.95 7.96E-10 21166000 6255 6156.9 5167.3 5895.2 6216.1 6412.4 4909.5 5727.3 4822.2 4392.4 TRUE FALSE FALSE 5521.798382 6346.586791 5446.659868 6135.631737 5757.550687 6290.094154 5098.86106 6379.272681 4623.426875 4366.273809 1.264647758 1.453547594 1.247438916 1.40523293 1.318641693 1.440609185 1.167783168 1.461033586 1.058895314 1 12.09218689 -8.616505044 0.604443441 0.992951501 1.354549064 0.649384102 0.093061719 0.330074463 0.238494582 0.058315737 0.021492508 2.42E-09 8.616505044 0.361597563 SHS(ph)SLPPNNSYADFER ddPTM_HeLa_CUDC101_4h_R1 1 SHSSLPPNNSYADFER 16 0 O43293 O43293 DAPK3 Death-associated protein kinase 3 1 0 S(0.065)HS(0.501)S(0.434)LPPNNSYADFER 78.021 0.012388 7854600 998.06 1111.8 960.34 688.99 1079 830.78 886.74 677.7 931.36 758.71 TRUE FALSE FALSE 881.0689198 1146.05324 1012.258885 717.0899903 999.4043197 814.9342557 920.9418588 754.8466286 892.9689466 754.1971592 1.168220947 1.519567167 1.34216746 0.950799113 1.325123421 1.08053212 1.221089005 1.00086114 1.18399935 1 9.558797906 -8.615871619 1.122771494 1.021726476 1.203420999 0.028160153 0.168289445 0.553728239 1.40743139 0.055033542 0.031106566 2.42E-09 8.615871619 0.181694523 APETLDSSGDVS(ph)PGPR ddPTM_HeLa_CUDC101_4h_R1 1 APETLDSSGDVSPGPR 16 0 Q8TER5-4 Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 APETLDSSGDVS(0.999)PGPR 126.07 0.00051152 4828100 848.5 777.44 592.95 582.81 654.9 742.79 670.86 434.27 691.33 946.95 TRUE FALSE FALSE 749.0401162 801.3920049 625.0066706 606.5795109 606.5893317 728.6225183 696.7352949 483.7055414 662.8330848 941.3174993 0.795735888 0.851351436 0.663970096 0.644394172 0.644404605 0.77404544 0.740170342 0.513860139 0.70415464 1 9.878537605 -8.615116772 0.222321682 1.149453242 0.593285406 0.128902248 0.118163354 1.733099173 0.188362675 0.312582931 0.11464534 2.43E-09 8.615116772 -0.556167836 RGQS(ph)SPPPAPPICLR ddPTM_HeLa_CUDC101_4h_R1 2 RGQSSPPPAPPICLR 15 1 H7C3R4;O43379-3;O43379-2;O43379;O43379-4 H7C3R4 WDR62 WD repeat-containing protein 62 1 0 RGQS(0.89)S(0.11)PPPAPPICLR;RGQS(0.767)S(0.233)PPPAPPICLR ; 134.02 0.0011985 18260200 3869 3938.1 3240.5 3608.6 3658.8 3770.9 3206.7 3593 3566.5 2695.7 TRUE FALSE FALSE 3415.481685 4059.428193 3415.691232 3755.774306 3388.897613 3698.976365 3330.383493 4002.012597 3419.48736 2679.665857 1.274592381 1.514900891 1.27467058 1.401583073 1.264671715 1.380387169 1.242835365 1.493474489 1.276087223 1 11.3878374 -8.615107076 0.68515586 1.004117532 1.359303969 0.245150755 0.121402851 0.277558426 0.261170623 0.049588866 0.020051835 2.43E-09 8.615107076 0.355186437 EVSFQSTGESEWK ddPTM_HeLa_CUDC101_4h_R1 1 EVSFQSTGESEWK 13 0 Q07021;I3L3Q7;I3L3B0 Q07021 C1QBP "Complement component 1 Q subcomponent-binding protein, mitochondrial" 0 0 206.69 7.59E-23 5777400 1087 869.2 1037.2 1138.8 1179.7 1029 1017.7 1175.5 1150.7 999.67 FALSE FALSE TRUE 959.5835078 895.9790217 1093.274169 1185.245186 1092.675881 1009.373539 1056.95303 1309.314168 1103.267659 993.7239184 0.965643968 0.901637774 1.100178982 1.192730863 1.099576916 1.01574846 1.063628449 1.31758343 1.110235588 1 9.95670128 -6.631636691 6.700436431 0.977382456 1.12680653 0.351981384 0.090516895 0.148818211 8.351919649 0.01240668 0.017573745 2.34E-07 6.631636691 0.149424074 SRSTTELDDYS(ph)TNK ddPTM_HeLa_CUDC101_4h_R1 1 SRSTTELDDYSTNK 14 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 S(0.001)RS(0.076)T(0.187)T(0.02)ELDDY(0.001)S(0.568)T(0.147)NK 190.57 9.71E-11 208030000 7597.9 5959.1 6116.3 6297 6325.4 5713.5 6199.9 8337.1 6856.5 7439.5 TRUE FALSE FALSE 6707.28568 6142.692808 6446.965679 6553.818878 5858.787844 5604.524507 6439.03222 9286.161764 6573.872168 7395.249523 0.906972193 0.830626849 0.871771217 0.886220114 0.792236668 0.757854686 0.87069844 1.255692825 0.888931759 1 12.85238311 -8.614900623 0.866261352 0.992486562 0.884769231 0 0.132885267 0.975428216 1.483264504 0.055032904 0.026516715 2.43E-09 8.614900623 -0.107717331 S(ph)RSQPCDLDAR ddPTM_HeLa_CUDC101_4h_R1 2 SRSQPCDLDAR 11 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 1 0 S(0.972)RS(0.028)QPCDLDAR;S(0.998)RS(0.002)QPCDLDAR ; 120.63 0.0023059 89526000 7527 6893.7 7572.7 7175.3 8516.7 7255.4 6714.5 6153.8 5859.9 4267.6 TRUE FALSE FALSE 6644.69647 7106.086726 7982.103068 7467.939748 7888.440009 7117.015333 6973.480514 6854.323717 5618.352442 4242.216125 1.56632672 1.67508833 1.881588027 1.760386441 1.859509222 1.677664485 1.643829618 1.615741281 1.324390902 1 12.05060241 -8.614553028 0.603810756 0.988432743 1.744190677 0.738696806 0.127619795 0.189909578 0.137014108 0.070075045 0.02585939 2.43E-09 8.614553028 0.755757933 RGEGDAPFSEPGTTSTQRPS(ph)SPETATK ddPTM_HeLa_CUDC101_4h_R1 2 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RGEGDAPFS(0.003)EPGT(0.018)T(0.041)S(0.132)T(0.132)QRPS(0.33)S(0.33)PET(0.013)AT(0.001)K;RGEGDAPFSEPGTT(0.005)S(0.018)T(0.018)QRPS(0.479)S(0.479)PET(0.002)ATK ; 116.2 6.55E-09 2060490000 7718.3 6148 6034.3 6159.3 6332.8 6025.9 5787.7 5816.8 6819.2 8544.3 TRUE FALSE FALSE 6813.572574 6337.412593 6360.532511 6410.502877 5865.641961 5910.965997 6010.933528 6478.961 6538.10969 8493.478124 0.802212295 0.746150458 0.748872537 0.754755918 0.690605412 0.695941746 0.707711663 0.762815999 0.769780012 1 13.05213975 -8.614364474 0.417169259 1.038230179 0.707558955 0.224987437 0.074106298 0.207087749 0.06885056 0.029433196 0.009134557 2.43E-09 8.614364474 -0.330671224 ESGVVAVS(ph)PEKSES(ph)PQKEDGLSSQLK ddPTM_HeLa_CUDC101_4h_R1 1 ESGVVAVSPEKSESPQKEDGLSSQLK 26 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 2 0 ES(0.013)GVVAVS(0.791)PEKS(0.523)ES(0.651)PQKEDGLS(0.01)S(0.011)QLK 53.1 0.0092688 68195000 3324.2 2862.6 2820.9 2665.5 2859.1 2773.8 2499.8 2652.1 2771 3335.6 TRUE FALSE FALSE 2934.542315 2950.793313 2973.406387 2774.210611 2648.189889 2720.894386 2596.218123 2954.004344 2656.778207 3315.759703 0.885028644 0.889929783 0.89674966 0.836674204 0.798667614 0.820594564 0.782993448 0.890898198 0.801257765 1 11.69512374 -8.610960992 0.267928339 1.055112854 0.80438019 0 0.069497402 1.019447495 0.149383819 0.090212884 0.030180291 2.45E-09 8.610960992 -0.250732665 SCSSPAVSAVSQLPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SCSSPAVSAVSQLPLSPK 18 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 SCSSPAVSAVSQLPLS(1)PK;SCSSPAVSAVSQLPLS(1)PK ; 187.5 2.53E-11 43429000 7346 7538.8 6696.6 7004.6 7924.4 7465.3 6061.3 4002.2 5783.8 5107.6 TRUE FALSE FALSE 6484.913016 7771.061492 7058.638452 7290.277864 7339.8328 7322.911841 6295.086371 4457.794271 5545.389316 5077.219768 1.27725671 1.530574182 1.390256631 1.43587991 1.44564016 1.442307439 1.239868798 0.877999077 1.092209825 1 12.30982299 -8.608982503 0.884192836 1.023786627 1.344338752 0.290337977 0.174574667 0.449966515 0.713545241 0.07561614 0.037147298 2.46E-09 8.608982503 0.320552125 HGS(ph)GADS(ph)DYENTQSGDPLLGLEGKR ddPTM_HeLa_CUDC101_4h_R1 1 HGSGADSDYENTQSGDPLLGLEGKR 25 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 2 0 HGS(0.657)GADS(0.659)DY(0.613)ENT(0.047)QS(0.023)GDPLLGLEGKR 60.454 0.0028214 10723000 1558.4 1475.6 1356.2 1447.4 2111.3 1735.1 1278.1 1450.8 1670.9 797 TRUE FALSE FALSE 1375.726714 1521.061487 1429.520274 1506.431228 1955.553605 1702.005858 1327.396745 1615.953208 1602.024795 792.2594086 1.736459927 1.919903343 1.804358849 1.901436842 2.468324875 2.148293652 1.675457219 2.039676891 2.02209627 1 9.629829077 -8.608486877 0.436839204 0.881636876 2.061236342 0 0.369631647 0.459626183 0.168390528 0.237357016 0.074900492 2.46E-09 8.608486877 1.179599466 EVSTAPAGTDMPAAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EVSTAPAGTDMPAAKK 16 1 H0YEL4;E9PJK2;A0A5F9ZI63;O75530-3;O75530;O75530-2 H0YEL4 EED Polycomb protein EED 0 1 ; EVSTAPAGTDMPAAK(1)K;EVSTAPAGTDMPAAK(1)K 271.6 8.93E-76 4059000 3193.2 3015.02 3704.8 3522.5 3489.7 3293.38 3588.44 3803.52 2717.81 3055.08 FALSE TRUE FALSE 2818.897937 3107.909193 3905.092694 3666.162776 3232.271783 3230.564264 3726.847333 4236.497342 2605.780721 3036.908248 0.928213073 1.023379351 1.285877733 1.20720235 1.064329746 1.06376749 1.227184698 1.395003403 0.858037355 1 11.56838761 -6.909777622 5.641218909 0.966558167 1.194410448 0.614508061 0.099239373 0.117371012 5.890509142 0.015887923 0.020969725 1.23E-07 6.909777622 0.227852281 EVSTYIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EVSTYIKK 8 1 Q5VTE0;P68104;A0A087WVQ9;A0A087WV01 Q5VTE0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 0 1 ; EVSTYIK(1)K;EVSTYIK(1)K 201.97 1.13E-07 61433000 10600.1 7191.9 5458.8 5667 10072.3 8240.7 9101.6 9221.7 8134.1 4750.7 FALSE TRUE FALSE 9357.572347 7413.473914 5753.91924 5898.124755 9329.286496 8083.522377 9452.651761 10271.46105 7798.808955 4722.442625 1.981511072 1.569838853 1.218420148 1.248956361 1.975521406 1.711724846 2.001644596 2.175031412 1.651435406 1 12.20531755 -9.440791677 1.055141297 0.980043601 1.737216203 0.066421155 0.36086618 0.444407697 0.846651823 0.261134758 0.058601037 3.62E-10 9.440791677 0.757172602 EVSTYIKK ddPTM_HeLa_CUDC101_4h_R1 2 EVSTYIKK 8 1 Q5VTE0;P68104;A0A087WVQ9;A0A087WV01 Q5VTE0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 0 0 ; ; 84.568 0.018339 2934000 1799.76 1787.1 2017.48 1844.36 2368.2 2082.22 1644.04 2342.69 1659.54 925.71 FALSE FALSE TRUE 1588.794861 1842.158433 2126.551071 1919.580973 2193.502604 2042.505123 1707.451174 2609.37236 1591.133059 920.2038358 1.726568396 2.00190258 2.310956539 2.086038873 2.383713824 2.219622483 1.85551408 2.835646037 1.729109353 1 9.84580966 -8.063127376 0.409987049 0.911789526 2.367295912 0.524918727 0.320686257 0.323026241 0.134292631 0.19274917 0.104868951 8.65E-09 8.063127376 1.455506386 APS(ph)PGAYK ddPTM_HeLa_CUDC101_4h_R1 1 APSPGAYK 8 0 P54259 P54259 ATN1 Atrophin-1 1 0 APS(1)PGAYK 85.29 0.035546 39416000 5679.9 4009.2 5181 4350.3 5215.2 4838.5 4453.9 4285.9 6029.9 5824 TRUE FALSE FALSE 5014.110732 4132.7187 5461.100532 4527.724038 4830.485086 4746.213674 4625.688415 4773.789532 5781.34497 5789.358589 0.86609089 0.713847421 0.943299754 0.782076972 0.834373102 0.819816842 0.798998429 0.824580039 0.998615802 1 12.4991878 -8.607268456 0.589803763 1.005304037 0.815671177 0.616664952 0.055528509 0.400907273 0.275987078 0.036826595 0.013474955 2.47E-09 8.607268456 -0.189632861 EVTWEVLEGEVEK ddPTM_HeLa_CUDC101_4h_R1 3 EVTWEVLEGEVEK 13 0 P05455 P05455 SSB Lupus La protein 0 0 ;; ;; 221.09 7.32E-32 10867900 4547.1 4140.8 3645.2 3789.3 3545.7 3532.51 3456.5 3058.3 4234.5 5243.1 FALSE FALSE TRUE 4014.095831 4268.37314 3842.270538 3943.844033 3284.140775 3465.133257 3589.818363 3406.44451 4059.952118 5211.913808 0.770176941 0.818964645 0.737209148 0.756697861 0.630121851 0.664848535 0.688771629 0.653588036 0.778975299 1 12.34759751 -13.52287875 0.114724973 2.022525513 0.538258439 0.421479928 0.077334106 16.83815154 0.140794576 3.970770394 0.182950244 3.00E-14 13.52287875 -1.484267074 EVVEEAENGR ddPTM_HeLa_CUDC101_4h_R1 1 EVVEEAENGR 10 0 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 0 139.38 0.0073623 25643000 2925.1 2394.4 2159.9 2138.5 2176.8 1910.6 2020.7 1854.5 2467.3 2169.3 FALSE FALSE TRUE 2582.224212 2468.168626 2276.670727 2225.717273 2016.221801 1874.158488 2098.639076 2065.608784 2365.59685 2156.396907 1.197471673 1.144579932 1.055775363 1.032146385 0.934995684 0.869115737 0.973215584 0.957898232 1.097013654 1 11.07440703 -6.000336852 2.097802077 1.098434747 0.93107989 0.672560581 0.054413897 0.213106967 1.873205993 0.012552358 0.024397117 9.99E-07 6.000336852 -0.167354856 ISREPEPAAGPQAEESATVSAPAPMS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 5 ISREPEPAAGPQAEESATVSAPAPMSPTR 29 1 Q9BWG6-2;Q9BWG6 Q9BWG6-2 SCNM1 Sodium channel modifier 1 1 0 ISREPEPAAGPQAEES(0.011)AT(0.002)VS(0.012)APAPMS(0.487)PT(0.487)R;ISREPEPAAGPQAEESATVSAPAPMS(0.802)PT(0.198)R;ISREPEPAAGPQAEESATVSAPAPMS(0.996)PT(0.004)R;ISREPEPAAGPQAEESATVSAPAPMS(0.751)PT(0.249)R;ISREPEPAAGPQAEESATVSAPAPMS(0.919)PT(0.081)R ;;;; 184.72 1.16E-22 262237000 9678.9 10086.5 8469.3 7907.83 10378.4 8405.7 7714.92 7080.25 8522.4 7704.49 TRUE FALSE FALSE 8544.354014 10397.25311 8927.175976 8230.345488 9612.806109 8245.375277 8012.487049 7886.237041 8171.103065 7658.663351 1.115645593 1.357580642 1.165631073 1.074645158 1.255154544 1.076607614 1.046199145 1.029714544 1.066909811 1 12.90287691 -8.603250868 1.107103677 1.014887683 1.141081455 0.152280589 0.097245669 0.50232606 1.242929639 0.034413773 0.019485197 2.49E-09 8.603250868 0.126193772 EVWEMELDR ddPTM_HeLa_CUDC101_4h_R1 1 EVWEMELDR 9 0 Q8ND24;E9PN76;Q8ND24-2 Q8ND24 RNF214 RING finger protein 214 0 0 114.89 0.0031493 0 1061.6 885.52 750.51 714.64 912.86 901.93 703.78 677.41 847.14 808.06 FALSE FALSE TRUE 937.1608573 912.8018216 791.0848408 743.7861081 845.5201365 884.727188 730.9250304 754.5236162 812.2205306 803.2536232 1.166706044 1.136380584 0.984850635 0.925966702 1.052619138 1.10142944 0.909955473 0.939334221 1.011163233 1 9.649711773 -6.742417104 24.73498119 1.085246262 0.987838041 0.285207457 0.071666268 242.5157129 315346.3887 0.013454793 0.019009275 1.81E-07 6.742417104 -0.097408221 EVWYFGLHYVDNK ddPTM_HeLa_CUDC101_4h_R1 2 EVWYFGLHYVDNK 13 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ; ; 170.66 4.34E-07 32236000 7748.6 7417.2 6043 7267.5 7634.8 8254.1 6980.8 7083.7 5543.6 7406.4 FALSE FALSE TRUE 6840.320854 7645.71514 6369.702859 7563.900063 7071.596015 8096.666795 7250.051794 7890.079775 5315.090462 7362.346403 0.92909522 1.038488917 0.865172937 1.02737628 0.960508461 1.099739995 0.984747443 1.071680052 0.721928876 1 12.84594992 -5.286509013 24.42306235 0.967872917 1.045324996 0.190700305 0.094592994 487.5546884 474979.4608 0.007333099 0.016403549 5.17E-06 5.286509013 0.077452079 LCVYLS(ph)SSEVQR ddPTM_HeLa_CUDC101_4h_R1 2 LCVYLSSSEVQR 12 0 Q8N4N3-2;Q8N4N3 Q8N4N3-2 KLHL36 Kelch-like protein 36 1 0 LCVY(0.36)LS(0.599)S(0.011)S(0.029)EVQR;LCVY(0.346)LS(0.622)S(0.016)S(0.016)EVQR ; 101.9 0.010049 128779000 1260.65 1414.7 1111.62 1374.43 1213.68 1189.18 1198.2 1202.31 1173.35 618.45 TRUE FALSE FALSE 1112.878518 1458.28523 1171.71754 1430.485196 1124.149244 1166.498373 1244.414975 1339.17611 1124.984016 614.7714319 1.810231348 2.372077092 1.905940125 2.326856978 1.828564546 1.897450519 2.024191286 2.17833172 1.829922404 1 9.263906315 -8.601844274 0.664079254 1.007118002 2.067786532 0.289110954 0.306683373 0.214197743 0.189585956 0.113100274 0.045262851 2.50E-09 8.601844274 1.06066853 SLFS(ph)PQNTLAAPTGHPPTSGVEK ddPTM_HeLa_CUDC101_4h_R1 2 SLFSPQNTLAAPTGHPPTSGVEK 23 0 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 S(0.014)LFS(0.984)PQNT(0.002)LAAPTGHPPTSGVEK;S(0.071)LFS(0.922)PQNT(0.007)LAAPTGHPPTSGVEK ; 128.55 1.07E-07 30093000 3534.3 2163.88 2600.1 2101.49 3690.2 3070.6 2406.9 1595.18 3838.3 3529.5 TRUE FALSE FALSE 3120.014712 2230.546578 2740.669271 2187.197846 3417.981298 3012.033421 2499.734939 1776.768843 3680.083649 3508.506377 0.889271495 0.63575389 0.781149862 0.623398566 0.9741984 0.858494498 0.71247838 0.506417447 1.048903224 1 11.77664127 -8.599006481 0.049833868 1.818517729 2.43E-17 0.462479016 0.126130798 64.92378349 1.214391751 25.12942497 19.02800471 2.52E-09 8.599006481 -1.818517729 T(ph)PDIAQR ddPTM_HeLa_CUDC101_4h_R1 1 TPDIAQR 7 0 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 0 T(1)PDIAQR 123.21 0.00066933 0 1519 1153.4 1089.2 1085.8 1251.3 1090.1 1337 1283 1348.6 1795 TRUE FALSE FALSE 1340.945123 1188.934887 1148.085447 1130.083617 1158.994092 1069.308159 1388.568538 1429.051534 1293.010137 1784.32326 0.751514679 0.666322585 0.643429065 0.633340181 0.649542669 0.599279392 0.778204583 0.800892734 0.724650161 1 10.80116129 -8.598549833 0.6625816 0.996814899 0.676864175 0.159859283 0.102443507 0.25768464 0.227235544 0.040985669 0.016428325 2.52E-09 8.598549833 -0.319950724 EVYQQQQYGSGGR ddPTM_HeLa_CUDC101_4h_R1 1 EVYQQQQYGSGGR 13 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 0 154.28 5.05E-07 0 600.37 627.16 521.21 574.38 547.61 656.78 497.48 520.49 541.88 609.29 FALSE FALSE TRUE 529.9955387 646.4820562 549.3881892 597.8056991 507.2139013 644.2530158 516.6679702 579.7404777 519.543477 605.665916 0.875062513 1.067390519 0.907081238 0.98702219 0.837448316 1.063710205 0.853057695 0.957195151 0.857805373 1 9.242378415 -9.730377226 1.650880576 1.000029283 0.933112187 0 0.088054981 0.717347301 3.530542412 0.051345721 0.011159164 1.86E-10 9.730377226 -0.066917096 NSGEPLPPKPGPGS(ph)PSHPGALDLDGVSR ddPTM_HeLa_CUDC101_4h_R1 2 NSGEPLPPKPGPGSPSHPGALDLDGVSR 28 1 A1X283;G3V144;A0A1B0GUF2 A1X283 SH3PXD2B SH3 and PX domain-containing protein 2B 1 0 NSGEPLPPKPGPGS(0.815)PS(0.184)HPGALDLDGVSR;NSGEPLPPKPGPGS(0.99)PS(0.009)HPGALDLDGVSR ; 77.984 1.22E-05 194278000 5233.5 4236.7 4102.5 3910.9 5138.5 4834.5 4013.6 3517.6 4894.5 5231.8 TRUE FALSE FALSE 4620.037063 4367.227705 4324.293559 4070.403406 4759.443092 4742.289967 4168.405896 3918.029365 4692.746638 5200.681021 0.888352322 0.839741505 0.831486019 0.782667383 0.915157664 0.911859418 0.801511548 0.75336852 0.902333102 1 12.34448484 -8.598045297 0.398137051 1.026935912 0.823974331 0.350226819 0.056914726 0.80322204 0.245309949 0.068703173 0.021546727 2.52E-09 8.598045297 -0.202961581 RGS(ph)LCATCGLPVTGR ddPTM_HeLa_CUDC101_4h_R1 2 RGSLCATCGLPVTGR 15 1 O43294-2;O43294 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 RGS(0.96)LCAT(0.04)CGLPVTGR;RGS(0.985)LCAT(0.015)CGLPVTGR ; 124.04 0.0017015 26075300 1954.59 2120.59 1884.7 1743.17 2201.7 2025.27 1855.74 1719.08 1651.38 969.16 TRUE FALSE FALSE 1725.475923 2185.922864 1986.592583 1814.264007 2039.284977 1986.641349 1927.316513 1914.773118 1583.309417 963.3953932 1.791036095 2.268977909 2.06207399 1.883197719 2.116768454 2.06212461 2.000545702 1.987525716 1.643467914 1 9.911984215 -8.594342892 0.623941866 0.991376343 2.060335063 0.569603262 0.221314666 0.161663078 0.125887982 0.084658078 0.032627674 2.54E-09 8.594342892 1.06895872 EWQELDDAEK ddPTM_HeLa_CUDC101_4h_R1 2 EWQELDDAEK 10 0 Q13200;Q13200-2;Q13200-3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 0 ; ; 187.16 1.34E-10 26954000 5622.9 4795.3 4058.9 4345.5 4723.2 4951.5 4115.4 4778 4711.5 5042.8 FALSE FALSE TRUE 4963.792186 4943.037509 4278.336412 4522.728273 4374.778946 4857.058387 4274.132357 5321.908207 4517.289976 5012.805201 0.990222438 0.986082106 0.853481482 0.902234994 0.872720716 0.968930208 0.852642819 1.06166268 0.901150113 1 12.29140246 -6.901619867 9.229833405 0.994999183 0.915135878 0.076571112 0.065494041 0.244247797 20.90165635 0.008481729 0.011155199 1.25E-07 6.901619867 -0.079863305 GNAEGS(ph)S(ph)DEEGKLVIDEPAK ddPTM_HeLa_CUDC101_4h_R1 1 GNAEGSSDEEGKLVIDEPAK 20 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 0 GNAEGS(1)S(1)DEEGKLVIDEPAK 60.334 0.027635 246420000 9654.2 7482.9 7065.9 6636.5 6627.1 7414.6 6392.2 5635.6 9247.1 12399 TRUE FALSE FALSE 8522.549311 7713.43928 7447.903927 6907.165155 6138.232036 7273.178859 6638.749295 6277.133924 8865.930624 12325.2502 0.691470694 0.625824154 0.604280141 0.560407703 0.498020887 0.590103953 0.538629982 0.509290588 0.719330682 1 13.58932931 -8.593691395 0.351794065 1.09240875 0.508124487 0.590431655 0.089589797 0.185822815 0.044717045 0.043401105 0.013666139 2.55E-09 8.593691395 -0.584284263 NRPDYVS(ph)EEEEDDEDFETAVK ddPTM_HeLa_CUDC101_4h_R1 2 NRPDYVSEEEEDDEDFETAVK 21 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NRPDYVS(1)EEEEDDEDFETAVK;NRPDYVS(1)EEEEDDEDFETAVK ; 111.27 1.27E-05 102750000 7905.6 6619.2 6591.1 6479.7 7503.2 6891.3 6764.7 6158.4 7475.9 7343.2 TRUE FALSE FALSE 6978.917552 6823.129706 6947.434803 6743.970174 6949.703884 6759.859934 7025.616745 6859.447363 7167.740238 7299.52232 0.956078665 0.934736467 0.951765677 0.923891986 0.95207653 0.926068808 0.962476233 0.939711814 0.981946479 1 12.83358634 -8.59324617 0.593412755 1.001152389 0.940885762 0.692803558 0.012676646 0.263244369 0.184540902 0.007673562 0.002860107 2.55E-09 8.59324617 -0.060266626 EWTDGLFTHVLR ddPTM_HeLa_CUDC101_4h_R1 2 EWTDGLFTHVLR 12 0 Q14204;A0A2R8YFZ7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 140.45 0.0011415 20704000 15861 11296.5 10165.2 11029.4 13304.2 12314.3 11737.5 9814.4 10265.1 9796.7 FALSE FALSE TRUE 14001.79762 11644.53178 10714.76146 11479.22661 12322.77567 12079.42524 12190.21931 10931.63162 9841.968233 9738.428793 1.437788161 1.195730032 1.100255666 1.178755511 1.265376164 1.24038749 1.251764485 1.122525189 1.010632048 1 13.24947331 -9.660770862 1.521208828 1.00058557 1.25426921 0.450215385 0.091876031 0.315353219 1.31788598 0.079586957 0.01807069 2.18E-10 9.660770862 0.253683641 EWYQETHEK ddPTM_HeLa_CUDC101_4h_R1 2 EWYQETHEK 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 0 0 ; ; 118.03 0.005769 33692000 7843.3 6960.2 7203.5 7508.2 7461.9 7372.5 6860 7235.4 7257.9 7933.3 FALSE FALSE TRUE 6923.920264 7174.635512 7592.942999 7814.416849 6911.450503 7231.881846 7124.592498 8059.04869 6958.72629 7886.112379 0.877989043 0.909781039 0.9628246 0.990908635 0.876407813 0.917040171 0.903435325 1.021929222 0.882402628 1 12.94509855 -9.596871817 1.412529768 0.999734583 0.923968195 0 0.057967817 0.456164806 1.642128903 0.032277258 0.007588453 2.53E-10 9.596871817 -0.075766388 NSNSPPSPS(ph)SMNQR ddPTM_HeLa_CUDC101_4h_R1 2 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 NSNSPPS(0.226)PS(0.598)S(0.176)MNQR;NS(0.002)NS(0.053)PPS(0.172)PS(0.387)S(0.387)MNQR ; 168.93 1.11E-06 13903000 2505.3 2049.6 2088.16 1826.46 2239.88 2223.53 2069.62 2036.59 2264.9 2522.8 TRUE FALSE FALSE 2211.632532 2112.745747 2201.052246 1900.950933 2074.648515 2181.11987 2149.445937 2268.427173 2171.539863 2507.794273 0.881903494 0.842471717 0.877684533 0.758017096 0.827280187 0.869736363 0.857106167 0.904550743 0.86591627 1 11.29220329 -8.590745216 0.62492502 1.000455377 0.844594878 0.11724459 0.054442841 0.325857986 0.254900971 0.024867456 0.009629434 2.57E-09 8.590745216 -0.155860499 VFVGGLS(ph)PDTSEEQIK ddPTM_HeLa_CUDC101_4h_R1 1 VFVGGLSPDTSEEQIK 16 0 O14979-3;O14979-2;A0A087WUK2;O14979 O14979-3 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like 1 0 VFVGGLS(0.998)PDT(0.002)SEEQIK 197.15 2.80E-16 8101500 1609 1413.1 1116 1020.1 1164.6 1275 1325 1177.1 1537 2014.9 TRUE FALSE FALSE 1420.395459 1456.635936 1176.334336 1061.704087 1078.689778 1250.681499 1376.105694 1311.096306 1473.644209 2002.915285 0.709164022 0.727257886 0.587311078 0.530079377 0.538559861 0.624430553 0.687051372 0.654593989 0.735749645 1 10.96788569 -8.590019829 0.505421895 1.023474593 0.602548697 0.435503272 0.096054061 0.289744836 0.145046873 0.056214909 0.019128411 2.57E-09 8.590019829 -0.420925896 LQDGTPQAALS(ph)PLTPAR ddPTM_HeLa_CUDC101_4h_R1 1 LQDGTPQAALSPLTPAR 17 0 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6 A0A087WVP4 SMTN Smoothelin 1 0 LQDGT(0.012)PQAALS(0.601)PLT(0.386)PAR 129.42 0.00026503 7861100 959.09 1065.2 1112.5 943.04 1103.6 983.65 641.13 499.58 1007 1305.4 TRUE FALSE FALSE 846.6669241 1098.017549 1172.645115 981.5012474 1022.189627 964.8885151 665.8585989 556.4501678 965.4910338 1297.635423 0.652469029 0.846167984 0.90367841 0.756376737 0.787732524 0.743574426 0.513132261 0.428818571 0.744038747 1 10.34166939 -8.585265896 0.056693293 1.676991359 1.38E-63 0.37489269 0.128498581 49.90349801 1.076932791 18.2991344 13.39941278 2.60E-09 8.585265896 -1.676991359 AAGGAPS(ph)PPPPVRR ddPTM_HeLa_CUDC101_4h_R1 4 AAGGAPSPPPPVRR 14 1 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR;AAGGAPS(1)PPPPVRR ;;; 130.19 0.0017327 559139000 14103.1 12604.2 12768.9 12526.7 13356.3 12231.1 11628.1 12972.7 11879.6 11241.6 TRUE FALSE FALSE 12449.956 12992.52046 13459.22536 13037.59297 12371.03236 11997.81215 12076.59971 14449.45973 11389.91786 11174.73446 1.114116495 1.162669279 1.204433573 1.166702709 1.10705381 1.073655234 1.080705743 1.293047256 1.019256242 1 13.44795293 -8.584218442 0.696785032 1.003216931 1.149283393 0.457896231 0.061368922 0.466382494 0.458451201 0.03406564 0.014371478 2.60E-09 8.584218442 0.146066462 EYAEDDNIYQQK ddPTM_HeLa_CUDC101_4h_R1 1 EYAEDDNIYQQK 12 0 J3KR44;F5H6Q1;F5GYJ8;Q96FW1;F5GYN4 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 0 112.94 0.027776 29177000 1856.6 1607.5 1878.9 1821.5 2277.3 2022.3 1866.8 2065.6 2389.2 2020.6 FALSE FALSE TRUE 1638.972162 1657.02517 1980.479017 1895.788643 2109.308116 1983.727997 1938.803101 2300.739555 2290.716165 2008.581381 0.815984942 0.824972881 0.98600885 0.943844576 1.050148197 0.987626399 0.965259919 1.145454984 1.140464701 1 10.9719612 -6.088433469 1.656857627 0.905977944 1.029275368 0.057640322 0.102109534 0.3690647 1.996832462 0.014090298 0.027697336 8.16E-07 6.088433469 0.123297424 MSGGST(ph)MSSGGGNTNNSNSK ddPTM_HeLa_CUDC101_4h_R1 1 MSGGSTMSSGGGNTNNSNSK 20 0 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 MS(0.395)GGS(0.188)T(0.417)MSSGGGNTNNSNSK 180.32 1.82E-08 26602000 3304.3 2742.1 2600.1 2752 3046.1 2851.7 2581.6 2590.2 2730.5 3248.6 TRUE FALSE FALSE 2916.974963 2826.580851 2740.669271 2864.238455 2821.395272 2797.308574 2681.173177 2885.057898 2617.947634 3229.277183 0.903290364 0.875298307 0.848694341 0.886959618 0.873692505 0.866233654 0.830270375 0.893406708 0.810691522 1 11.65699556 -8.58329214 0.472327679 1.012015873 0.860323303 0 0.061195479 0.255072307 0.111209204 0.017409858 0.005790491 2.61E-09 8.58329214 -0.15169257 EYATEVDVDFVR ddPTM_HeLa_CUDC101_4h_R1 1 EYATEVDVDFVR 12 0 C9J1E7;Q10567-4;Q10567-3;Q10567-2;Q10567;K7EJ01;H7C034;A0A087WYD1;A0A087WU93;A0A087WZQ6;A0A087X253;P63010-3;P63010;P63010-2 C9J1E7 AP1B1;AP2B1 AP-1 complex subunit beta-1;AP-2 complex subunit beta 0 0 127.42 0.011704 2637100 505.55 497.01 553.02 378.12 581.76 555.79 449.28 530.3 688.23 714.01 FALSE FALSE TRUE 446.2901954 512.322289 582.917934 393.541368 538.8447238 545.1892318 466.6088801 590.6672085 659.8608681 709.7630368 0.628787598 0.721821597 0.821285279 0.554468671 0.759189611 0.768128521 0.657415019 0.832203394 0.92969179 1 9.471193633 -9.387276113 1.035138884 1.005249269 0.710301135 0.574924291 0.0840874 0.268905661 0.500705167 0.059661301 0.014241665 4.10E-10 9.387276113 -0.294948134 TPS(ph)PSPPCSSSPSPSGR ddPTM_HeLa_CUDC101_4h_R1 1 TPSPSPPCSSSPSPSGR 17 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 T(0.391)PS(0.598)PS(0.011)PPCSSSPSPSGR 125.61 0.00028366 7008500 862.77 804.28 724.99 991.47 993.28 817.8 647.14 713.25 876.79 530.54 TRUE FALSE FALSE 761.6374085 829.0589135 764.1851524 1031.906432 920.0077133 802.2018275 672.1004066 794.4434969 840.6483451 527.3843245 1.44417908 1.572020394 1.449009986 1.956649798 1.744472997 1.521095319 1.274403458 1.506384358 1.593995699 1 9.04271088 -8.581030999 0.638045356 1.002611203 1.5821532 0 0.247015919 0.408817751 0.33507939 0.116266444 0.046135703 2.62E-09 8.581030999 0.579541996 DHFLGPQESFPEENAS(ph)SPFTQAR ddPTM_HeLa_CUDC101_4h_R1 2 DHFLGPQESFPEENASSPFTQAR 23 0 A0A0U1RRL2;B1AM27;O14795;O14795-2;A0A1B0GUS7 A0A0U1RRL2 UNC13B Protein unc-13 homolog B 1 0 DHFLGPQESFPEENAS(0.469)S(0.469)PFT(0.063)QAR;DHFLGPQESFPEENAS(0.531)S(0.319)PFT(0.15)QAR ; 172.74 4.15E-10 23057000 8566.3 6914.1 6788.9 6517.6 8767.3 7968.9 7864.3 5887.2 8105.4 8094.7 TRUE FALSE FALSE 7562.1713 7127.115226 7155.928469 6783.415899 8120.553746 7816.90651 8167.628685 6557.375051 7771.291981 8046.552364 0.939802658 0.885735269 0.889316088 0.843021407 1.009196657 0.971460342 1.015046981 0.814929768 0.965791513 1 12.97415506 -8.58025021 0.939209397 0.993787634 0.924780798 0.124580723 0.063323102 0.679724373 1.219706889 0.02454776 0.012851847 2.63E-09 8.58025021 -0.069006835 EVEDADEKLFEDDDS(ph)NEK ddPTM_HeLa_CUDC101_4h_R1 1 EVEDADEKLFEDDDSNEK 18 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 EVEDADEKLFEDDDS(1)NEK 54.457 0.033204 3457100 1162.8 606.68 866.26 786.89 864.95 1140.5 856.81 811.63 1400.9 1531.8 TRUE FALSE FALSE 1026.498347 625.3710917 913.0926359 818.9827754 801.1443617 1118.746863 889.8574487 904.0226785 1343.154309 1522.688785 0.674135356 0.410701844 0.599658082 0.537853029 0.526137954 0.734718002 0.584398767 0.593701541 0.882093782 1 10.57240539 -8.578041771 0.747257337 0.984330167 0.575579849 0.725395978 0.087549883 0.212183159 0.241083395 0.043818711 0.019585072 2.64E-09 8.578041771 -0.408750317 FTPPAESGSPS(ph)KETLPPPAAPPKPGK ddPTM_HeLa_CUDC101_4h_R1 2 FTPPAESGSPSKETLPPPAAPPKPGK 26 2 C9K0J5;Q70E73 C9K0J5 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 FT(0.002)PPAES(0.014)GS(0.013)PS(0.937)KET(0.034)LPPPAAPPKPGK;FT(0.003)PPAES(0.099)GS(0.106)PS(0.396)KET(0.396)LPPPAAPPKPGK ; 103.27 1.19E-06 193113000 2155.98 1870.06 1625.32 1672.55 1780.52 1757.72 1931.35 1775.17 1951.83 2228.19 TRUE FALSE FALSE 1903.259293 1927.674332 1713.189716 1740.763818 1649.174587 1724.19442 2005.842816 1977.248177 1871.374741 2214.936627 0.859283859 0.870306766 0.773471211 0.785920372 0.744569649 0.778439617 0.905598288 0.892688375 0.844888616 1 11.11304971 -8.576758536 0.604296455 1.001143152 0.815409446 0.126340591 0.068645528 0.418758975 0.306819982 0.037649138 0.014445848 2.65E-09 8.576758536 -0.185733706 EYFVEDTECR ddPTM_HeLa_CUDC101_4h_R1 1 EYFVEDTECR 10 0 C9JSL4;C9J313;Q8IVL5-2;Q8IVL5 C9JSL4 LEPREL1 Prolyl 3-hydroxylase 2 0 0 133.13 0.00069537 0 475.89 449.05 310.33 304.29 506.59 466.4 513.32 503.62 406.25 231.09 FALSE FALSE TRUE 420.1068956 462.8846982 327.1073785 316.7002615 469.219865 457.5041971 533.1189244 560.9500651 389.5042031 229.7154664 1.828814151 2.015034971 1.423967587 1.378663206 2.042613292 1.991612512 2.320779409 2.44193425 1.695594159 1 7.843704184 -4.289252396 0.074978042 9.47E-22 4.452161867 0.475414473 0.306760114 43.53049033 0.531056427 9.124549435 25.68464434 5.14E-05 4.289252396 4.452161867 EYGHTFR ddPTM_HeLa_CUDC101_4h_R1 1 EYGHTFR 7 0 Q96EY7-2;Q96EY7 Q96EY7-2 PTCD3 "Pentatricopeptide repeat domain-containing protein 3, mitochondrial" 0 0 101.28 0.018881 2010000 1677.3 1317.9 1423.4 1360 1456.1 1418.5 1399.8 1113.5 1245.2 1108 FALSE FALSE TRUE 1480.689437 1358.502937 1500.35331 1415.466678 1348.686404 1391.444476 1453.790755 1240.256339 1193.872329 1101.409567 1.344358612 1.233422133 1.362211983 1.285141078 1.224509433 1.263330661 1.31993656 1.126062799 1.083949482 1 10.10513533 -9.354016664 0.994243845 0.994350223 1.277081342 0.630418751 0.068658029 0.230730874 0.395118426 0.047630043 0.011464292 4.43E-10 9.354016664 0.282731119 YS(ph)DFEWLR ddPTM_HeLa_CUDC101_4h_R1 1 YSDFEWLR 8 0 O60493-4;O60493;O60493-3 O60493-4 SNX3 Sorting nexin-3 1 0 Y(0.001)S(0.999)DFEWLR 94.409 0.003351 0 661.68 493.92 533.87 486.01 731.62 614.23 501.11 494.39 621.44 658.81 TRUE FALSE FALSE 584.1188734 509.1370898 562.7326271 505.8315885 677.6498502 602.5145861 520.4379806 550.6693592 595.8239802 654.8913688 0.891932466 0.777437471 0.859276292 0.772390067 1.034751537 0.920022182 0.794693602 0.840856034 0.909805822 1 9.355111807 -8.575305696 0.855986952 0.991106581 0.8617281 0.1575369 0.0780548 0.487515061 0.728436344 0.032500218 0.016059598 2.66E-09 8.575305696 -0.129378481 LYGPS(ph)SVSFADDFVR ddPTM_HeLa_CUDC101_4h_R1 2 LYGPSSVSFADDFVR 15 0 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5;E9PQ34;E9PJH8;E9PIG2;E9PRS3;E9PNX1 P50454 SERPINH1 Serpin H1 1 0 LYGPS(0.996)S(0.004)VSFADDFVR;LYGPS(0.967)S(0.032)VS(0.001)FADDFVR ; 116.58 0.0013026 11640700 3480.2 2829.2 3102.8 2974.9 3664.9 3268.9 3092 2709 2821.1 2770.5 TRUE FALSE FALSE 3072.256232 2916.364299 3270.546753 3096.229281 3394.547629 3206.551179 3211.259476 3017.38161 2704.813064 2754.020943 1.115552966 1.058947756 1.187553334 1.124257711 1.232578727 1.164316193 1.166025801 1.095627692 0.982132351 1 11.42732382 -8.575300721 0.382299581 0.976595127 1.167281192 0.674082245 0.043684806 0.748686684 0.213736637 0.059157726 0.018944551 2.66E-09 8.575300721 0.190686065 SIGVS(ph)NFNHR ddPTM_HeLa_CUDC101_4h_R1 2 SIGVSNFNHR 10 0 B4DK69;P52895;S4R3P0 B4DK69 AKR1C2 Aldo-keto reductase family 1 member C2 1 0 SIGVS(1)NFNHR;SIGVS(1)NFNHR ; 105.65 0.0064904 16957200 7372.8 5820.2 6322.8 5720.5 7575.7 6686.3 5960.4 5866.5 6148 6854.6 TRUE FALSE FALSE 6508.57156 5999.513463 6664.629693 5953.806716 7016.855704 6558.769968 6190.294625 6534.318647 5894.576838 6813.828534 0.955200373 0.880490819 0.978103523 0.873782879 1.029796343 0.96256751 0.908489932 0.958979025 0.86509028 1 12.73424993 -8.575075812 0.957653596 0.995252842 0.943345408 0 0.060263576 0.590625997 1.101848381 0.016061025 0.008546851 2.66E-09 8.575075812 -0.051907434 NIPS(ph)PGQLDPDTR ddPTM_HeLa_CUDC101_4h_R1 3 NIPSPGQLDPDTR 13 0 Q9P2D1 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 1 0 NIPS(0.986)PGQLDPDT(0.014)R;NIPS(1)PGQLDPDTR;NIPS(1)PGQLDPDTR ;; 139.21 0.00078243 30992900 6413.8 5298.4 5117 4633.5 4877.4 5304.5 5178.2 4150.4 6405 7237.3 TRUE FALSE FALSE 5661.984087 5461.637424 5393.640498 4822.474158 4517.603919 5203.3255 5377.924909 4622.86476 6140.983189 7194.252218 0.787014955 0.759166799 0.749715236 0.670323199 0.62794628 0.723261479 0.747530771 0.642577522 0.85359576 1 12.81262902 -8.573342688 0.380489322 1.049912664 0.673573185 0.694655663 0.057377554 0.355556553 0.100678404 0.055339458 0.017754821 2.67E-09 8.573342688 -0.376339479 TGQLEGAPAPGPAAS(ph)PQTLDHSGATATGGASELK ddPTM_HeLa_CUDC101_4h_R1 1 TGQLEGAPAPGPAASPQTLDHSGATATGGASELK 34 0 P55317-2;P55317 P55317-2 FOXA1 Hepatocyte nuclear factor 3-alpha 1 0 TGQLEGAPAPGPAAS(0.595)PQT(0.404)LDHS(0.001)GATATGGASELK 109.52 3.76E-15 35430000 3587.2 3163.9 3023 2524.8 3279.7 2819.8 2625 2796.3 3671 3779 TRUE FALSE FALSE 3166.713854 3261.376009 3186.432524 2627.772257 3037.763065 2766.017013 2726.247129 3114.619489 3519.679826 3756.52234 0.842990822 0.868190234 0.848240004 0.699522595 0.80866365 0.736323856 0.725736967 0.829123111 0.936951656 1 11.87518197 -8.572422558 0.288004183 1.064392114 0.739421316 0.699397341 0.048861859 0.888545635 0.150750002 0.10587082 0.035678971 2.68E-09 8.572422558 -0.324970798 SVTVTVAY(ph)LMQKLNLS(ph)MNDAYDIVK ddPTM_HeLa_CUDC101_4h_R1 1 SVTVTVAYLMQKLNLSMNDAYDIVK 25 1 F8VW29;Q16828-2;Q16828 F8VW29 DUSP6 Dual specificity protein phosphatase 6 2 0 S(0.006)VT(0.006)VT(0.007)VAY(0.98)LMQKLNLS(0.928)MNDAY(0.073)DIVK 50.144 0.0025674 0 624.53 428.89 564.44 447.96 553.34 441.46 541.65 589.37 560.21 654.12 TRUE FALSE FALSE 551.3235401 442.1035925 594.9553337 466.229745 512.5212106 433.039886 562.5416219 656.4614985 537.1179067 650.2292651 0.847890997 0.679919555 0.914993166 0.717023625 0.788216154 0.665980308 0.8651435 1.009584671 0.826043882 1 9.344804679 -8.571409281 0.784961384 0.990575083 0.802528496 0.038915786 0.113424118 0.493136323 0.619925816 0.047110112 0.021961944 2.68E-09 8.571409281 -0.188046587 SQQTSFQS(ph)SPCNK ddPTM_HeLa_CUDC101_4h_R1 1 SQQTSFQSSPCNK 13 0 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 SQQT(0.001)S(0.002)FQS(0.713)S(0.284)PCNK 120.9 0.0021274 12481000 4042.1 3591.3 3677.1 3583.7 4373.4 3240.8 3546.2 2960.6 3727.1 3280.9 TRUE FALSE FALSE 3568.291165 3701.943696 3875.895149 3729.858776 4050.782995 3178.98714 3682.978122 3297.622737 3573.46736 3261.385061 1.094102996 1.135083293 1.188419974 1.143642565 1.24204377 0.974735298 1.129268103 1.011111131 1.095690111 1 11.67126907 -8.567366868 0.847581145 1.007965703 1.118995398 0.063247121 0.078398215 0.548087008 0.804034463 0.03122087 0.015425064 2.71E-09 8.567366868 0.111029695 GLQPGEEELPDIS(ph)PPIVIPDDSKDR ddPTM_HeLa_CUDC101_4h_R1 2 GLQPGEEELPDISPPIVIPDDSKDR 25 1 Q92995;Q92995-2 Q92995 USP13 Ubiquitin carboxyl-terminal hydrolase 13 1 0 GLQPGEEELPDIS(1)PPIVIPDDSKDR;GLQPGEEELPDIS(1)PPIVIPDDSKDR ; 99.987 2.66E-06 25572000 2536.7 2133.22 1922.38 2124.4 2410.53 2171.03 2201.5 2150.4 2619.3 2372.97 TRUE FALSE FALSE 2239.351871 2198.94198 2026.309678 2211.042214 2232.710004 2129.62122 2286.412592 2395.192844 2511.331345 2358.855469 0.949338313 0.932207169 0.859022396 0.937336875 0.946522597 0.902819714 0.969288972 1.015404664 1.064639771 1 11.20387131 -8.565068627 0.892558485 0.995109531 0.936345634 0.355718579 0.044472654 0.533310729 0.86710626 0.016185174 0.008297779 2.72E-09 8.565068627 -0.058763898 EQMMNSSIS(ph)SGSGSLR ddPTM_HeLa_CUDC101_4h_R1 1 EQMMNSSISSGSGSLR 16 0 C9JUA9;A0A0C4DFT3;A0A590UKA8;A0A590UJC5;A0A590UJR5;A0A590UJ08;A0A590UJ81;A0A590UJ18;A0A590UJ68;A0A590UJ25;A0A590UJS9;A0A590UJX2;A0A590UK48;A0A590UJR4;A0A590UJD9;A0A590UK81;A0A590UJ29;A0A590UJ64;E7EQD7;A0A590UK02;A0A590UK70;A0A590UJL2;Q12959-7;Q12959;Q12959-4;Q12959-5;Q12959-6;Q12959-3;Q12959-9;Q12959-8;Q12959-2 C9JUA9 DLG1 Disks large homolog 1 1 0 EQMMNS(0.032)S(0.032)IS(0.888)S(0.047)GSGSLR 90.498 0.0031325 0 1555.6 1303.2 1121.4 1426.6 1513.7 1312.6 1306.6 1277.3 1409.3 1453.8 TRUE FALSE FALSE 1373.254926 1343.350047 1182.026276 1484.782914 1402.037367 1287.564342 1356.996 1422.702669 1351.208057 1445.152733 0.950248991 0.92955576 0.817924811 1.027422833 0.97016553 0.890953816 0.938998328 0.984465266 0.934993255 1 10.49700626 -8.564842837 0.907995912 0.995071994 0.937226187 0 0.056254092 0.701073894 1.179148481 0.020994807 0.01088758 2.72E-09 8.564842837 -0.057845807 QLS(ph)LEGSGLGVEDLK ddPTM_HeLa_CUDC101_4h_R1 2 QLSLEGSGLGVEDLK 15 0 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-6 SYNRG Synergin gamma 1 0 QLS(1)LEGSGLGVEDLK;QLS(0.999)LEGS(0.001)GLGVEDLK ; 101.01 0.0054124 7027200 2019.87 1340.92 1504.31 1414.35 1432.49 1800.4 1654.6 2436.61 1581.55 2162.82 TRUE FALSE FALSE 1783.103901 1382.232156 1585.637549 1472.033306 1326.818067 1766.06037 1718.418476 2713.983833 1516.35784 2149.95545 0.829367837 0.642911999 0.737521119 0.684680841 0.61713747 0.821440449 0.799280969 1.262344219 0.70529733 1 11.07009105 -8.563204067 0.963600166 0.981065896 0.785487831 0 0.191821129 0.630998216 1.193082644 0.064423392 0.034731037 2.73E-09 8.563204067 -0.195578065 HIISATSLSTS(ph)PTELGSR ddPTM_HeLa_CUDC101_4h_R1 3 HIISATSLSTSPTELGSR 18 0 Q5JSZ5;Q5JSZ5-5;A0A1W2PQP5 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 HIISATSLST(0.172)S(0.827)PT(0.001)ELGSR;HIISATSLST(0.071)S(0.924)PT(0.004)ELGSR;HIISAT(0.006)S(0.015)LS(0.096)T(0.214)S(0.661)PT(0.007)ELGSR ;; 233.89 6.75E-44 120693000 7320 5381.3 4448.6 4900.4 8498.6 6638.6 6635.2 5983.2 7465.1 7518 TRUE FALSE FALSE 6461.960696 5547.091475 4689.104772 5100.259493 7871.67521 6511.979766 6891.121887 6664.303303 7157.385418 7473.282602 0.864675008 0.742256351 0.627449144 0.68246576 1.053308918 0.87136806 0.92210107 0.891750474 0.957729796 1 12.86752636 -8.561944622 1.025741343 0.983297882 0.831529293 0.198602092 0.117056787 0.567901963 1.213648309 0.045430747 0.025429738 2.74E-09 8.561944622 -0.151768589 EYNEDEDPAAR ddPTM_HeLa_CUDC101_4h_R1 1 EYNEDEDPAAR 11 0 Q13123;D6REL4;E7EQZ7;D6RCQ4;D6RAY9 Q13123 IK Protein Red 0 0 144.17 0.006443 7619000 1735.6 1576.6 1799.7 1605.1 1812.7 1762.5 1804.7 1377.9 1736.7 2117 FALSE FALSE TRUE 1532.155599 1625.173177 1896.997226 1670.562916 1678.980732 1728.883249 1874.307884 1534.754566 1665.112491 2104.40799 0.728069655 0.772270959 0.901439851 0.793839847 0.797839934 0.821553262 0.890658034 0.729304666 0.791249843 1 11.03919872 -9.447434142 1.16118001 1.000798841 0.801744787 0 0.083485641 0.252990936 0.606287702 0.040621982 0.009945511 3.57E-10 9.447434142 -0.199054054 SSQPS(ph)PTAVPASDSPPTK ddPTM_HeLa_CUDC101_4h_R1 2 SSQPSPTAVPASDSPPTK 18 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 SSQPS(0.943)PT(0.056)AVPASDSPPTK;SSQPS(0.608)PT(0.392)AVPAS(0.001)DSPPTK ; 202.81 3.54E-17 74025000 7840.4 7286.9 6851.5 6102.9 6249.7 6506.8 5714.6 5872.3 6384.4 8216 TRUE FALSE FALSE 6921.360197 7511.400752 7221.912815 6351.802641 5788.672082 6382.693631 5935.014036 6540.778895 6121.23233 8167.130867 0.847465323 0.91971108 0.884265592 0.777727545 0.708776702 0.781509901 0.726695107 0.80086618 0.749496051 1 12.99561363 -8.559289596 0.148314398 1.167301045 0.653242224 0 0.089779722 3.533393768 0.228275223 0.510065006 0.247068103 2.76E-09 8.559289596 -0.514058821 RNS(ph)LEGYSR ddPTM_HeLa_CUDC101_4h_R1 2 RNSLEGYSR 9 1 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 RNS(1)LEGYSR;RNS(1)LEGYSR ; 129.74 0.0017871 81029000 3025.3 2298.56 2493.6 2812.4 2470.4 2509.3 2429.1 2364.3 2929.3 2959.6 TRUE FALSE FALSE 2670.67892 2369.375909 2628.411559 2927.101828 2288.163514 2461.439283 2522.791201 2633.442355 2808.553014 2941.996168 0.907777838 0.805363357 0.893410939 0.994937336 0.777758836 0.836656183 0.857510023 0.895120933 0.954641969 1 11.52257965 -8.559205339 0.472759646 1.012652496 0.859709158 0.340684624 0.058130918 0.802215454 0.354517251 0.055087344 0.0188026 2.76E-09 8.559205339 -0.152943338 EYQDLLNVK ddPTM_HeLa_CUDC101_4h_R1 1 EYQDLLNVK 9 0 P08670;B0YJC4;B0YJC5;P17661;E7ESP9;E7EMV2;P07196;P07197-2;Q16352;P07197;P12036-2;P12036 P08670;P12036-2 VIM;DES;NEFM;NEFL;INA;NEFH Vimentin;Desmin;Neurofilament light polypeptide;Neurofilament medium polypeptide;Alpha-internexin;Neurofilament heavy polypeptide 0 0 140.45 0.0099925 15129000 1911 1943.3 2115.6 1992.6 1886.5 1953.7 1760.6 1979.5 2421.5 2531 FALSE FALSE TRUE 1686.995477 2003.17077 2229.975735 2073.866841 1747.336653 1916.436428 1828.506932 2204.838279 2321.684745 2515.945499 0.670521471 0.796190049 0.886337059 0.824289255 0.69450497 0.761716193 0.726767306 0.876345803 0.922788171 1 11.29688496 -9.486824822 1.205582158 1.001124865 0.768363437 0.496537798 0.071359779 0.272543678 0.703313304 0.05288472 0.012653719 3.26E-10 9.486824822 -0.232761428 TGEDEDEEDNDALLKENES(ph)PDVR ddPTM_HeLa_CUDC101_4h_R1 1 TGEDEDEEDNDALLKENESPDVR 23 1 A0A087WWS1;Q96FV9 A0A087WWS1 THOC1 THO complex subunit 1 1 0 TGEDEDEEDNDALLKENES(1)PDVR 95.209 7.81E-05 14887000 1805.5 1160.5 1423.8 1142.9 1035 1206.6 1233.3 859.05 1695.4 2527.8 TRUE FALSE FALSE 1593.862027 1196.253629 1500.774935 1189.512402 958.650112 1183.586115 1280.868794 956.8407796 1625.514894 2512.764533 0.634306162 0.476070724 0.597260473 0.47338793 0.381512115 0.471029458 0.509744856 0.380792059 0.646902992 1 11.29505977 -8.554998295 0.373206968 1.094108086 0.417250131 0.509894722 0.12063625 0.277664944 0.076513135 0.077130491 0.025213404 2.79E-09 8.554998295 -0.676857955 EYTINIHK ddPTM_HeLa_CUDC101_4h_R1 2 EYTINIHK 8 0 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899-2;B8ZZK4 P62899 RPL31 60S ribosomal protein L31 0 0 ; ; 110.12 0.0019084 3110400 3996.9 3934.4 4301.3 4631.4 3766.7 4643.8 4867.2 4391.1 3715.2 4259.5 FALSE FALSE TRUE 3528.389441 4055.614201 4533.841289 4820.288511 3488.838045 4555.227252 5054.929534 4890.965075 3562.057884 4234.164305 0.833314247 0.957831088 1.070775946 1.138427365 0.823973232 1.075826757 1.1938435 1.155119339 0.841265862 1 12.04786154 -4.483817372 0.532143901 0.929843244 1.335697309 0.413678248 0.101723896 2.540944936 0.559485407 0.022545381 0.608903684 3.28E-05 4.483817372 0.405854065 EYTINIHK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 EYTINIHKR 9 1 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899-2;B8ZZK4 P62899 RPL31 60S ribosomal protein L31 0 1 EYTINIHK(1)R 99.013 0.010386 3860800 3125.1 1934.4 1632.5 1232.3 3565.6 2747.3 3448.6 3436.6 3008.3 1854.4 FALSE TRUE FALSE 2758.780515 1993.996571 1720.757888 1282.55852 3302.572792 2694.89983 3581.613657 3827.808653 2884.296601 1843.369946 1.496596232 1.08171264 0.933484834 0.69576838 1.791595224 1.461941937 1.942970625 2.076527645 1.564686788 1 10.84812992 -5.02523551 1.302431763 1.180346967 2.077988447 0.545560681 0.295448411 0.324934726 0.93253086 0.046326941 0.265431677 9.44E-06 5.02523551 0.897641481 EYTINIHKR ddPTM_HeLa_CUDC101_4h_R1 1 EYTINIHKR 9 1 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899-2;B8ZZK4 P62899 RPL31 60S ribosomal protein L31 0 0 91.318 0.014003 1775400 2100.6 2487.8 2250.7 2464.8 2727.2 2558.6 2490.3 2358.6 2478.8 1652 FALSE FALSE TRUE 1854.370852 2564.446169 2372.37965 2565.325198 2526.019889 2509.798968 2586.351705 2627.09349 2376.622815 1642.173831 1.12921715 1.561616756 1.444658054 1.562152039 1.538217113 1.528339401 1.574956108 1.599765775 1.447241924 1 10.68139113 -7.332702815 3.028737552 1.052823917 1.544549908 0.535543154 0.133050273 0.040488331 0.705434181 0.010128822 0.011668643 4.65E-08 7.332702815 0.491725991 EYVEPELHINDLWR ddPTM_HeLa_CUDC101_4h_R1 2 EYVEPELHINDLWR 14 0 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 0 ; ; 163.33 2.76E-05 9925900 6586.5 6279.1 6050.6 5372.2 7033.5 6246.2 5634.9 5455.8 6409.2 6944.3 FALSE FALSE TRUE 5814.440454 6472.551628 6377.713738 5591.301537 6514.652718 6127.064142 5852.239981 6076.866219 6145.010063 6902.994995 0.84230692 0.93764397 0.923905311 0.809981978 0.943742929 0.887595043 0.847782736 0.880323139 0.890194773 1 12.75300672 -9.439965061 1.059185298 1.00304156 0.881680714 0.030438604 0.052625765 0.337892518 0.650045048 0.031860014 0.007186918 3.63E-10 9.439965061 -0.121360845 KVEEEQEADEEDVS(ph)EEEAESK ddPTM_HeLa_CUDC101_4h_R1 4 KVEEEQEADEEDVSEEEAESK 21 1 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 1 0 KVEEEQEADEEDVS(0.999)EEEAES(0.001)K;KVEEEQEADEEDVS(1)EEEAESK;KVEEEQEADEEDVS(0.987)EEEAES(0.013)K;KVEEEQEADEEDVS(0.995)EEEAES(0.005)K ;;; 157.31 1.79E-07 128115000 25096.5 18370.5 18544.1 21846.7 15087.6 15935.9 15501.5 15532 17763.6 30973.1 TRUE FALSE FALSE 22154.72631 18936.47333 19546.65014 22737.70286 13974.61781 15631.94926 16099.39805 17300.1001 17031.37689 30788.87062 0.719569308 0.615042804 0.634860901 0.738503959 0.453885366 0.507714279 0.522896674 0.561894599 0.553166665 1 14.91012133 -8.554499169 0.253593798 1.163264571 0.465662143 0 0.153601705 0.805743324 0.111829294 0.195505623 0.070587081 2.79E-09 8.554499169 -0.697602428 KPPAPPS(ph)PVQSQSPSTNWS(ph)PAVPVK ddPTM_HeLa_CUDC101_4h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(0.987)PVQS(0.011)QS(0.002)PS(0.125)T(0.258)NWS(0.617)PAVPVK 89.936 1.08E-05 22563000 4167.7 3529.4 3052.6 3026.1 3464.8 3776.2 3065.5 2652.3 3669.1 4586.2 TRUE FALSE FALSE 3679.168524 3638.136631 3217.63279 3149.517438 3209.208607 3704.175277 3183.737362 2954.227111 3517.858145 4558.921078 0.80702615 0.798025798 0.705788219 0.690847107 0.703940374 0.812511384 0.698353252 0.648010145 0.771642695 1 12.15447672 -8.552378654 0.360647545 1.052770447 0.691922225 0.26338509 0.081974444 0.465184526 0.120210746 0.067931262 0.022281188 2.80E-09 8.552378654 -0.360848223 EYWDYEAHVPSWGNQDDYQLVR ddPTM_HeLa_CUDC101_4h_R1 2 EYWDYEAHVPSWGNQDDYQLVR 22 0 H3BNI9;P19784 H3BNI9 CSNK2A2 Casein kinase II subunit alpha 0 0 ; ; 94.632 0.00025689 14095900 3117.3 2350.91 2473.05 2065.39 3005.67 2932.89 2380.58 2246.71 2810.48 2523.46 FALSE FALSE TRUE 2751.89482 2423.338751 2606.750564 2149.625532 2783.947712 2876.95001 2472.399768 2502.466385 2694.630825 2508.450348 1.097049747 0.966070049 1.039187627 0.85695359 1.109827713 1.146903311 0.985628346 0.997614478 1.074221312 1 11.29258067 -9.925706796 2.162827098 0.99956986 1.039552744 0 0.08274436 1.180429834 10.00754282 0.064188485 0.012206394 1.19E-10 9.925706796 0.039982884 EYWMDPEGEMKPGR ddPTM_HeLa_CUDC101_4h_R1 2 EYWMDPEGEMKPGR 14 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 0 ; ; 175.88 2.87E-07 83597000 7907.3 7518.7 6996.1 7222.3 7869 7176.2 7185.9 6556.1 7639.1 9343.5 FALSE FALSE TRUE 6980.418281 7750.342235 7374.330328 7516.856611 7288.519547 7039.325941 7463.06257 7302.419923 7324.213065 9287.924446 0.751558469 0.834453626 0.793969672 0.809315004 0.78473071 0.757900862 0.803523178 0.786227318 0.788573713 1 13.18114052 -9.34147155 0.837843895 1.013889544 0.788327205 0 0.068722462 0.152548739 0.172423211 0.023209869 0.004798834 4.56E-10 9.34147155 -0.225562339 EYWMDPEGEMKPGRK ddPTM_HeLa_CUDC101_4h_R1 2 EYWMDPEGEMKPGRK 15 2 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 0 ; ; 66.393 0.022943 99473000 11140.2 10250.6 9904.4 11105.6 13210 11341.9 11416.9 11897.7 11991.5 9926.6 FALSE FALSE TRUE 9834.362643 10566.40884 10439.86182 11558.53437 12235.52462 11125.57215 11857.25366 13252.08608 11497.20529 9867.556142 0.996636097 1.07082328 1.057998726 1.17136748 1.239975171 1.12749013 1.201640354 1.342995762 1.165152255 1 13.26847711 -6.117072094 0.640004622 0.992415167 1.262752814 0.499675828 0.073634505 0.252638133 0.194186748 0.010764433 0.032450659 7.64E-07 6.117072094 0.270337646 EYWNDPELDEGER ddPTM_HeLa_CUDC101_4h_R1 2 EYWNDPELDEGER 13 0 A0A494C108;Q8N9T8;H0YFD2;F8WFC1 A0A494C108 KRI1 Protein KRI1 homolog 0 0 ; ; 209.67 5.64E-23 19155500 2762.9 2664.03 2358.1 2050.21 2556.2 2932.4 2465.8 2487.2 3287.5 3245.4 FALSE FALSE TRUE 2439.03705 2746.105607 2485.586019 2133.826426 2367.634219 2876.469356 2560.906732 2770.332794 3151.987859 3226.096216 0.756033573 0.851216276 0.770462457 0.661426778 0.733900684 0.891625408 0.793809781 0.858726029 0.977028473 1 11.65557375 -9.295585969 0.817209838 1.012923013 0.785779577 0.606626552 0.063827534 0.404213125 0.439634187 0.06029706 0.012996041 5.06E-10 9.295585969 -0.227143436 FAAYFQQGDMESNGK ddPTM_HeLa_CUDC101_4h_R1 2 FAAYFQQGDMESNGK 15 0 K7EQ48;A0A2U3TZU2;P06744;P06744-2;CON__Q3ZBD7 K7EQ48 GPI Glucose-6-phosphate isomerase 0 0 ; ; 181.87 6.06E-10 55269000 3019.48 2420.79 2302.04 2494.66 2826.11 1877.42 2396.81 2165.93 2509.22 2358.05 FALSE FALSE TRUE 2665.541132 2495.371671 2426.495246 2596.403018 2617.633496 1841.611341 2489.255765 2412.490716 2405.78889 2344.024214 1.137164504 1.064567361 1.035183524 1.107669026 1.116726304 0.785662252 1.061958213 1.029208957 1.026349845 1 11.19477176 YPLCSADAAVST(ph)TPPGS(ph)PPPPPPLPEPPVLK ddPTM_HeLa_CUDC101_4h_R1 1 YPLCSADAAVSTTPPGSPPPPPPLPEPPVLK 31 0 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 2 0 Y(0.002)PLCS(0.004)ADAAVS(0.197)T(0.587)T(0.235)PPGS(0.975)PPPPPPLPEPPVLK 67.848 0.00014113 9464200 1130.8 868.59 879.48 775.67 895.16 959.81 861.17 851.43 994.29 1314.9 TRUE FALSE FALSE 998.2493382 895.3502284 927.0273491 807.3051753 829.1258302 941.5032234 894.3856154 948.3533496 953.3049454 1307.078916 0.763725377 0.685000896 0.709235944 0.617640729 0.634334943 0.720310925 0.684262904 0.725551715 0.729340007 1 10.35213053 -8.549411527 0.552812215 1.010336332 0.672423238 0.219984984 0.088487093 0.183577596 0.112808882 0.029177925 0.010876844 2.82E-09 8.549411527 -0.337913095 IAAPELHKGDS(ph)DS(ph)EEDEPTK ddPTM_HeLa_CUDC101_4h_R1 1 IAAPELHKGDSDSEEDEPTK 20 1 Q92733 Q92733 PRCC Proline-rich protein PRCC 2 0 IAAPELHKGDS(0.995)DS(0.998)EEDEPT(0.008)K 63.436 0.021071 76618000 5814.6 4758 4777.3 4584.8 4926.4 4573.1 4690.1 5039.1 5293.6 5962.3 TRUE FALSE FALSE 5133.021402 4904.58834 5035.575289 4771.787961 4562.989287 4485.875737 4870.998728 5612.730775 5075.395567 5926.835974 0.86606436 0.827522199 0.849622853 0.805115576 0.76988621 0.756875297 0.821854823 0.947002886 0.856341493 1 12.53304642 -8.549135855 0.545444619 1.006124188 0.815378223 0.158272753 0.065268803 0.431243911 0.257715695 0.038547641 0.014261382 2.82E-09 8.549135855 -0.190745965 FACNGTVIEHPEYGEVIQLQGDQR ddPTM_HeLa_CUDC101_4h_R1 2 FACNGTVIEHPEYGEVIQLQGDQR 24 0 K7EM18;P41567;O60739;K7EQP2 K7EM18 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b 0 0 ; ; 97.152 1.43E-05 20332800 986.14 1109.3 766.62 920.93 891.69 980.35 1053.87 766.7 989 942.47 FALSE FALSE TRUE 870.5461641 1143.476218 808.0657961 958.489506 825.9118052 961.6514571 1094.518119 853.9780289 948.2330014 936.8641465 0.929212808 1.220535787 0.862521849 1.023082706 0.881570512 1.026457743 1.168278371 0.911528136 1.012135009 1 9.871696049 -5.010407926 24.86766657 0.975983919 1.054269443 0.021916625 0.110116198 851.0104474 2033340.084 0.01405391 0.038753507 9.76E-06 5.010407926 0.078285524 VLDEEGSEREFDEDS(ph)DEKEEEEDTYEK ddPTM_HeLa_CUDC101_4h_R1 1 VLDEEGSEREFDEDSDEKEEEEDTYEK 27 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 VLDEEGS(0.034)EREFDEDS(0.882)DEKEEEEDT(0.04)Y(0.044)EK 54.521 0.0043176 15913000 2124.7 2246.1 1895.8 2100.3 1580.3 1297.3 1044.7 849.95 2436.6 2626.7 TRUE FALSE FALSE 1875.645887 2315.299679 1998.292682 2185.959312 1463.724417 1272.556164 1084.994429 946.7048724 2336.162317 2611.076272 0.718342052 0.886722347 0.765313792 0.837187077 0.560582789 0.487368438 0.415535326 0.362572661 0.8947124 1 11.35042889 -4.650073136 0.299705912 0.935208997 4.44E-27 0.860831961 0.078705546 2.115120867 0.167594763 0.049667314 0.703250113 2.24E-05 4.650073136 -0.935208997 down FADLSEAANR ddPTM_HeLa_CUDC101_4h_R1 1 FADLSEAANR 10 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 130.66 0.012324 38801000 1976.8 1629.1 1131.8 1571.3 1837 1260.4 1182.8 1339.1 1424.9 1364.3 FALSE FALSE TRUE 1745.082501 1679.29064 1192.988532 1635.384406 1701.48817 1236.35997 1228.420992 1491.537731 1366.165019 1356.185083 1.286758366 1.238245916 0.879664986 1.205871106 1.254613542 0.911645457 0.905791553 1.099803965 1.00735883 1 10.40533837 -5.248365315 24.74253129 1.138858063 0.965751443 0.209408334 0.133375384 815.766798 1543826.304 0.020791901 0.05264952 5.64E-06 5.248365315 -0.173106621 FADQDDIGNVSFDR ddPTM_HeLa_CUDC101_4h_R1 1 FADQDDIGNVSFDR 14 0 H0YEN2;E9PQP7;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-2;Q5H9R7;Q5H9R7-5;Q5H9R7-3 H0YEN2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 0 0 166.62 1.54E-10 0 831.37 852.86 660.21 654.24 810.83 932.94 843.83 899.13 851.24 749.79 FALSE FALSE TRUE 733.9180689 879.1356057 695.9029496 680.9227351 751.0166863 915.1457239 876.3768058 1001.483325 816.1515269 745.3302157 0.984688469 1.179524977 0.93368407 0.913585308 1.007629465 1.227839291 1.175823531 1.343677344 1.095020046 1 9.541735938 -5.251150121 4.473362118 0.996661282 1.24589654 0.619087521 0.082836016 0.08490243 4.481468597 0.010615922 0.02677676 5.61E-06 5.251150121 0.249235257 FAEHVFR ddPTM_HeLa_CUDC101_4h_R1 1 FAEHVFR 7 0 P37235;E9PC71;E5RK89;E5RHE8;E5RIA5;E5RIZ1;E5RIG4;E5RFL9;E5RHC8;A0A1B0GXG3;E5RI78;E5RI95;E5RGZ0;E5RJJ6;E5RJT1;E5RGA9;P61601;P84074 P37235 HPCAL1;NCALD;HPCA Hippocalcin-like protein 1;Neurocalcin-delta;Neuron-specific calcium-binding protein hippocalcin 0 0 106.42 0.00061865 0 6475.9 4987.7 5272.8 5220.5 5187.8 5398.1 4863.7 5448.8 4354.2 4015.7 FALSE FALSE TRUE 5716.804819 5141.365125 5557.863517 5433.414555 4805.10633 5295.140236 5051.294538 6069.069367 4174.718033 3991.814438 1.432131906 1.287976985 1.3923151 1.361139061 1.203739904 1.326499595 1.265413164 1.52037863 1.045819664 1 11.96282894 -9.363876867 0.98327929 0.991036358 1.34676158 0.699270715 0.085219809 0.250360058 0.415533606 0.065009067 0.015253831 4.33E-10 9.363876867 0.355725222 FAEWCLEYGEHGCR ddPTM_HeLa_CUDC101_4h_R1 2 FAEWCLEYGEHGCR 14 0 H7C2E3;O43813 H7C2E3 LANCL1 LanC-like protein 1 0 0 ; ; 128.22 0.00089289 21336000 6428.5 6082 6101.7 5390.2 6717.6 5798.8 5076.2 5183.8 5938.5 1683.9 FALSE FALSE TRUE 5674.960975 6269.379211 6431.576359 5610.035654 6222.056031 5688.197551 5271.990734 5773.902838 5693.712516 1673.884088 3.390295072 3.745408213 3.842306887 3.351507846 3.717136734 3.398202774 3.14955544 3.449404221 3.401497486 1 10.70898391 -9.022634657 0.687915252 0.876637997 3.534342009 0.039638913 0.759179663 0.139909618 0.114248474 0.209189489 0.054697683 9.49E-10 9.022634657 2.657704013 FAHGNAELHEWEERR ddPTM_HeLa_CUDC101_4h_R1 1 FAHGNAELHEWEERR 15 1 Q8IWR0;Q8IWR0-2 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A 0 0 86.803 0.0042878 7267800 1159.4 1245.1 1461.2 1011.7 1450.9 1054.6 1260.3 1354.8 1171.1 1271.1 FALSE FALSE TRUE 1023.49689 1283.460055 1540.196892 1052.961499 1343.869998 1034.485262 1308.910193 1509.024956 1122.826762 1263.539441 0.810023697 1.015765724 1.218954345 0.833342803 1.063575821 0.818720199 1.035907666 1.194284015 0.888636101 1 10.30325498 -7.119939028 11.9440904 0.910309859 1.020000136 0.165388372 0.128854937 0.915225123 86.73786548 0.022362326 0.027392222 7.59E-08 7.119939028 0.109690277 AKS(ph)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ddPTM_HeLa_CUDC101_4h_R1 12 AKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK 32 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;Q5RI18;A0A1W2PRI6 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 AKS(0.999)PQPPVEEEDEHFDDT(0.001)VVCLDTYNCDLHFK;AKS(0.49)PQPPVEEEDEHFDDT(0.49)VVCLDT(0.015)Y(0.005)NCDLHFK;AKS(0.891)PQPPVEEEDEHFDDT(0.109)VVCLDTYNCDLHFK;AKS(0.961)PQPPVEEEDEHFDDT(0.039)VVCLDTYNCDLHFK;AKS(0.862)PQPPVEEEDEHFDDT(0.136)VVCLDT(0.001)Y(0.001)NCDLHFK;AKS(0.962)PQPPVEEEDEHFDDT(0.034)VVCLDT(0.003)Y(0.001)NCDLHFK;AKS(0.985)PQPPVEEEDEHFDDT(0.015)VVCLDTYNCDLHFK;AKS(0.753)PQPPVEEEDEHFDDT(0.23)VVCLDT(0.014)Y(0.002)NCDLHFK;AKS(0.721)PQPPVEEEDEHFDDT(0.279)VVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(0.987)PQPPVEEEDEHFDDT(0.013)VVCLDTYNCDLHFK;AKS(0.987)PQPPVEEEDEHFDDT(0.013)VVCLDTYNCDLHFK ;;;;;;;;;;; 131.5 5.20E-18 6049662400 22655.05 24623.08 25851.92 22736.25 28983.2 25869.38 24329.88 23153.96 28739.58 5015.87 TRUE FALSE FALSE 19999.45938 25381.68791 27249.55299 23663.53255 26845.16708 25375.96468 25268.29162 25789.71321 27554.92235 4986.035382 4.011094557 5.090555113 5.465174413 4.745961618 5.384070714 5.089407261 5.067812337 5.172388729 5.526419336 1 12.28367741 -8.5491191 0.520957924 0.783405567 5.280329918 0 1.406111964 0.125813411 0.068323502 0.26167393 0.094390692 2.82E-09 8.5491191 4.496924351 FAMEPEEFDSDTLR ddPTM_HeLa_CUDC101_4h_R1 2 FAMEPEEFDSDTLR 14 0 A0A499FI48;P13667 A0A499FI48 PDIA4 Protein disulfide-isomerase A4 0 0 ; ; 129.74 0.0048393 36780000 3032.4 2374.4 2582.4 2618.5 2875.2 2819.9 2857.2 2214.4 2721.1 3064.8 FALSE FALSE TRUE 2676.946669 2447.55245 2722.012355 2725.293748 2663.102224 2766.115106 2967.403161 2466.478345 2608.935106 3046.570433 0.878675457 0.803379572 0.893467725 0.894544803 0.874131185 0.907943921 0.974014298 0.809591769 0.856351482 1 11.57297038 -9.077276389 0.900281262 0.998601859 0.882709157 0 0.063235942 0.384950533 0.575321415 0.028133232 0.008822297 8.37E-10 9.077276389 -0.115892702 SSS(ph)ALDSPAGPR ddPTM_HeLa_CUDC101_4h_R1 2 SSSALDSPAGPR 12 0 Q9UPN4-3;Q9UPN4-2;I3L2J8;Q9UPN4 Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa 1 0 SS(0.009)S(0.99)ALDS(0.001)PAGPR;SS(0.005)S(0.995)ALDSPAGPR ; 160.86 0.00011363 23252000 5867.6 4845 5041.9 4796.5 5334 3874.2 3208.7 2167.7 4485.8 5529.6 TRUE FALSE FALSE 5179.808823 4994.268707 5314.480365 4992.122002 4940.521447 3800.30609 3332.460634 2414.462206 4300.893425 5496.709693 0.94234717 0.90859241 0.966847562 0.908201866 0.898814331 0.691378352 0.606264624 0.439255908 0.782448713 1 12.42435257 -4.639226807 0.769678326 0.97040505 0.277811388 0.85250394 0.066415879 0.196423545 0.114125649 0.005494503 0.103916252 2.29E-05 4.639226807 -0.692593662 down LGAQTPVGVS(ph)TLEPGQTLLPR ddPTM_HeLa_CUDC101_4h_R1 1 LGAQTPVGVSTLEPGQTLLPR 21 0 O94887-3;O94887-2;O94887;C9JWM9;C9JVQ5 O94887-3 FARP2 "FERM, RhoGEF and pleckstrin domain-containing protein 2" 1 0 LGAQT(0.121)PVGVS(0.423)T(0.335)LEPGQT(0.122)LLPR 114.56 1.25E-05 9742300 2909.6 2735.8 2237.8 2342.1 2835.6 2360.5 1366.6 735.05 2285.6 2424.8 TRUE FALSE FALSE 2568.541099 2820.086755 2358.782237 2437.620961 2626.423437 2315.477395 1419.31022 818.7251208 2191.386601 2410.377182 1.065617912 1.16997737 0.978594659 1.011302704 1.089631721 0.960628657 0.588833246 0.339666807 0.909146758 1 11.23504321 -4.634696029 2.196155759 1.041070719 0.336760607 0.9220295 0.067138556 0.053740925 0.458544288 0.007993806 0.054436996 2.32E-05 4.634696029 -0.704310112 down GDQPAASGDS(ph)DDDEPPPLPR ddPTM_HeLa_CUDC101_4h_R1 1 GDQPAASGDSDDDEPPPLPR 20 0 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 GDQPAAS(0.002)GDS(0.998)DDDEPPPLPR 189.11 4.97E-12 21201000 819.43 695.62 519.47 668.83 653.01 635.59 748.38 659.01 688.28 902.45 TRUE FALSE FALSE 723.3776576 717.0512277 547.5541195 696.1077783 604.8387533 623.4671797 777.2452673 734.0290346 659.9088071 897.0821873 0.806367207 0.799314977 0.610372302 0.775968789 0.674228919 0.694994493 0.866414782 0.818240564 0.735616888 1 9.809096355 -8.547571165 0.659975319 0.995627671 0.744503657 0 0.106307723 0.350589559 0.311393762 0.0431094 0.01810705 2.83E-09 8.547571165 -0.251124013 ALPNNTSSS(ph)PQPK ddPTM_HeLa_CUDC101_4h_R1 2 ALPNNTSSSPQPK 13 0 A0A087WXZ1;A0A087WT22;E7ESS1;A0A087X1Q1;J3KP33;A0A087WZU8;A0A0U1RQC9;P04637-8;P04637-9;P04637-7;P04637-5;P04637-6;P04637-2;P04637-3;P04637-4;P04637 A0A087WXZ1 TP53 Cellular tumor antigen p53 1 0 ALPNNT(0.257)S(0.257)S(0.139)S(0.346)PQPK;ALPNNTS(0.003)S(0.011)S(0.986)PQPK ; 161.21 5.25E-05 28707000 8296.1 7613.1 8022.3 8110.6 8811.1 7878.1 7045.5 4363.6 6480.5 6296.8 TRUE FALSE FALSE 7323.643734 7847.650587 8456.009804 8441.385325 8161.122707 7727.838368 7317.247295 4860.334586 6213.371047 6259.346354 1.17003331 1.253749217 1.350941349 1.348604926 1.303829864 1.234607886 1.169011408 0.776492354 0.992654935 1 12.61179629 -8.547181476 0.896318422 1.017068558 1.215374914 0.207201103 0.156247291 0.627204288 1.030739857 0.063847986 0.033301123 2.84E-09 8.547181476 0.198306356 NDLQDTEIS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 NDLQDTEISPR 11 0 Q9NS91 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 NDLQDTEIS(1)PR;NDLQDTEIS(1)PR ; 148.41 0.0008093 141016000 5509.6 4623.3 4046.2 3609 4123.5 3900.3 3517.1 3372.9 5206.2 6917 TRUE FALSE FALSE 4863.77304 4765.738393 4264.949811 3756.190619 3819.31762 3825.908276 3652.755725 3756.857302 4991.598232 6875.857376 0.707369681 0.693111874 0.620278982 0.546286872 0.555467836 0.556426358 0.531243673 0.546383832 0.725960118 1 12.7473239 -8.541930695 0.298545509 1.118697414 0.497763076 0.60133502 0.086471919 0.205573669 0.037832083 0.047727092 0.016368453 2.87E-09 8.541930695 -0.620934338 CGNVVYISIPHY(ph)KS(ph)TGDPK ddPTM_HeLa_CUDC101_4h_R1 1 CGNVVYISIPHYKSTGDPK 19 1 Q4G0J3;Q4G0J3-3;D6RFF0 Q4G0J3 LARP7 La-related protein 7 2 0 CGNVVYIS(0.001)IPHY(0.829)KS(0.849)T(0.32)GDPK 49.463 0.036968 4329400 1060.3 1042.8 969.48 1056.7 1309.8 1053.8 1006.9 808.6 964.15 580.75 TRUE FALSE FALSE 936.0132413 1074.927432 1021.893021 1099.796793 1213.178663 1033.700521 1045.73647 900.6477555 924.4073289 577.2956732 1.621375813 1.862005004 1.770138023 1.905084075 2.101485807 1.790591146 1.811439993 1.560115202 1.601271882 1 9.173166602 -8.54000645 0.585682685 0.987566426 1.853450921 0.368488029 0.222009909 0.232815036 0.161921509 0.09603001 0.037456751 2.88E-09 8.54000645 0.865884494 AST(ph)PDWVSEGPQPGLRR ddPTM_HeLa_CUDC101_4h_R1 2 ASTPDWVSEGPQPGLRR 17 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 AS(0.141)T(0.859)PDWVSEGPQPGLRR;AS(0.175)T(0.825)PDWVSEGPQPGLRR ; 110.74 0.0099127 89851000 3075.5 3621.1 2927 2925.4 3671.1 2949 2680.2 2340.3 3214.2 1611.55 TRUE FALSE FALSE 2714.994552 3732.661799 3085.242474 3044.710457 3400.290267 2892.752738 2783.576212 2606.710292 3081.709316 1601.964429 1.694790785 2.33005286 1.925911973 1.900610526 2.122575386 1.805753415 1.73760176 1.627196113 1.923706457 1 10.6456264 -8.539822476 0.80359548 1.050869244 1.911648228 0 0.335621879 0.222706828 0.295219731 0.09664876 0.047099313 2.89E-09 8.539822476 0.860778984 AVSPT(ph)EPTPR ddPTM_HeLa_CUDC101_4h_R1 2 AVSPTEPTPR 10 0 Q6PJI9;H3BMH3;Q6PJI9-3;Q6PJI9-2 Q6PJI9 WDR59 WD repeat-containing protein 59 1 0 AVS(0.205)PT(0.794)EPT(0.001)PR;AVS(0.225)PT(0.774)EPT(0.001)PR ; 115.91 0.029717 47630000 5554.1 4890.4 4592.5 4681.5 4645.9 4857.5 4443.4 4929.1 5003 5259.5 TRUE FALSE FALSE 4903.056817 5041.067427 4840.784442 4872.431805 4303.181213 4764.851281 4614.783426 5490.20882 4796.774222 5228.21626 0.937806811 0.964204076 0.925895985 0.93194917 0.82306871 0.911372262 0.88266881 1.050111271 0.917478158 1 12.3521031 -8.539274315 0.477970952 1.004652918 0.916577438 0 0.059727413 1.246550358 0.568814545 0.049367267 0.01728367 2.89E-09 8.539274315 -0.08807548 EGRPSGEAFVELES(ph)EEEVK ddPTM_HeLa_CUDC101_4h_R1 1 EGRPSGEAFVELESEEEVK 19 1 P55795 P55795 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 1 0 EGRPSGEAFVELES(1)EEEVK 126.26 2.65E-05 4748400 2293.7 1825.9 1903.4 1923.4 1864.3 1847.7 2081 1885.6 1645.5 2254.3 TRUE FALSE FALSE 2024.835963 1882.153815 2006.303561 2001.844566 1726.774303 1812.458201 2161.264867 2100.249082 1577.671794 2240.891323 0.903585079 0.839913027 0.895314976 0.893325145 0.770574764 0.80881129 0.964466614 0.937238259 0.70403762 1 11.12985697 -8.537983276 0.682157179 0.997094022 0.870853934 0 0.106188752 0.515259634 0.491058552 0.031953872 0.013869221 2.90E-09 8.537983276 -0.126240089 SSSS(ph)QTLTQFDSNIAPADPDTAIVHPVPIR ddPTM_HeLa_CUDC101_4h_R1 1 SSSSQTLTQFDSNIAPADPDTAIVHPVPIR 30 0 Q96D71-3;Q96D71;H0YE73 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 S(0.013)S(0.013)S(0.123)S(0.82)QT(0.029)LT(0.001)QFDSNIAPADPDTAIVHPVPIR 151.31 1.34E-16 6404200 411.57 358.61 231.13 328.81 333.17 284.5 308.94 464.28 323.46 464.15 TRUE FALSE FALSE 363.3263885 369.658349 243.6255869 342.220293 308.5927129 279.0736365 320.8559193 517.1317585 310.1268419 461.3892152 0.787461814 0.8011855 0.528026185 0.741717149 0.668833823 0.604855136 0.695412699 1.120814578 0.672158845 1 8.849840472 -8.537793718 0.701745176 0.990664005 0.722928777 0 0.178185644 0.581620457 0.587245398 0.076863644 0.0340544 2.90E-09 8.537793718 -0.267735228 NESEDNKFS(ph)DDS(ph)DDDFVQPR ddPTM_HeLa_CUDC101_4h_R1 1 NESEDNKFSDDSDDDFVQPR 20 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 2 0 NES(0.31)EDNKFS(0.692)DDS(0.998)DDDFVQPR 60.09 0.028151 19086000 2914.1 2495.6 2579.1 2122 2365.5 2446.4 2759.4 2010.5 2919.1 2928 TRUE FALSE FALSE 2572.513615 2572.486478 2718.533947 2208.544332 2191.001778 2399.738996 2865.830982 2239.367193 2798.773462 2910.584126 0.883847882 0.883838558 0.93401662 0.758797628 0.752770469 0.824487076 0.984623999 0.769387551 0.961584803 1 11.507093 -8.537068659 0.412207646 1.018620516 0.831499858 0.385082585 0.070542838 1.06961584 0.361829074 0.085404351 0.028703641 2.90E-09 8.537068659 -0.187120657 FAVGIVIGR ddPTM_HeLa_CUDC101_4h_R1 1 FAVGIVIGR 9 0 Q96AE4;E9PEB5;Q96AE4-2;Q96I24;Q96I24-2 Q96AE4;Q96I24 FUBP1;FUBP3 Far upstream element-binding protein 1;Far upstream element-binding protein 3 0 0 138.48 0.021196 1043700 486.74 604.95 524.5 554.56 416.22 518.86 475.51 476.05 516.45 429.31 FALSE FALSE TRUE 429.685075 623.5877925 552.8560565 577.1773538 385.5162798 508.96361 493.85058 530.2416077 495.1617124 426.756445 1.006862533 1.46122642 1.295483789 1.352474838 0.903363697 1.19263251 1.157218797 1.242492325 1.160291117 1 8.737269131 -7.453073266 24.99985459 1.003026877 1.220855211 0.204695214 0.145439958 132.3961562 47415.76873 0.023530175 0.026907238 3.52E-08 7.453073266 0.217828334 NDKSEEEQS(ph)SSSVK ddPTM_HeLa_CUDC101_4h_R1 2 NDKSEEEQSSSSVK 14 1 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2D6;G3V2Q1;P07910-4;B4DY08;G3V4W0;G3V5V7 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKSEEEQS(0.753)S(0.224)S(0.012)S(0.012)VK;NDKSEEEQS(0.435)S(0.435)S(0.085)S(0.045)VK ; 111.58 0.0017935 35629000 11626.3 4986.8 9994.9 10456.8 7475 7267.4 9110.5 6843.5 10051.6 15046.5 TRUE FALSE FALSE 10263.48274 5140.437397 10535.25453 10883.2735 6923.584142 7128.786453 9461.895037 7622.536378 9637.268794 14957.00275 0.686199161 0.343680982 0.704369365 0.727637327 0.462899169 0.47661865 0.632606358 0.509629938 0.644331552 1 13.86853348 -8.535899512 0.575941785 1.012107429 0.548851998 0.179438398 0.157418502 0.371320354 0.249783991 0.081536924 0.031597801 2.91E-09 8.535899512 -0.463255431 FCFTPHTEEGCLSER ddPTM_HeLa_CUDC101_4h_R1 1 FCFTPHTEEGCLSER 15 0 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 79.885 0.019132 10104000 3209.3 2724.4 2754.5 2961.9 3211.9 3032.5 2697.1 2600.9 2704.8 1034.1 FALSE FALSE TRUE 2833.110719 2808.335535 2903.416602 3082.699084 2974.964536 2974.660115 2801.12805 2896.975943 2593.306999 1027.949127 2.75608067 2.731979103 2.824474991 2.998882924 2.894077593 2.893781449 2.724967585 2.818209448 2.522797024 1 10.00555315 -9.130614367 0.574217742 0.75372933 2.882687953 0.263404564 0.474025783 0.100874265 0.051005773 0.113187384 0.022448928 7.40E-10 9.130614367 2.128958623 MLLQQDLS(ph)SY(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 MLLQQDLSSYK 11 0 A0A087WU25;H3BTX9;F5GWL3;Q68CK6;Q08AH3 A0A087WU25 ACSM2B;ACSM2A "Acyl-coenzyme A synthetase ACSM2B, mitochondrial;Acyl-coenzyme A synthetase ACSM2A, mitochondrial" 2 0 MLLQQDLS(0.547)S(0.547)Y(0.907)K 53.569 0.039134 11311000 3738.6 3671.5 3583.4 3333.2 3369 3254.1 3167.5 3644.4 3239.3 2719.1 TRUE FALSE FALSE 3300.366975 3784.614563 3777.129443 3469.142303 3120.475582 3192.033464 3289.671536 4059.263765 3105.774683 2702.926672 1.221034595 1.400191356 1.397422091 1.283476292 1.154480295 1.180954518 1.217077611 1.50180314 1.149041413 1 11.40030666 -8.534142966 0.806799254 1.016535102 1.291012473 0.361594553 0.112236431 0.35599063 0.476137311 0.049191072 0.02415614 2.92E-09 8.534142966 0.274477371 FCNVDDDELR ddPTM_HeLa_CUDC101_4h_R1 3 FCNVDDDELR 10 0 Q86VP6-2;Q86VP6;H0YH27;Q86VP6-3 Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 0 ;; ;; 134.57 0.0015057 6088600 6924.8 5224.2 4714.2 5213.5 5725.4 6565.1 5880 5290.7 6172 1794.39 FALSE FALSE TRUE 6113.085441 5385.15141 4969.063912 5426.129065 5303.048649 6439.881656 6106.79357 5892.971902 5917.587548 1783.716888 3.427161273 3.019061738 2.785791817 3.042034921 2.973032707 3.610372082 3.423633879 3.303759661 3.317559858 1 10.80067093 -9.344301203 0.678922685 0.699672718 3.229097903 0 0.758509725 0.222816043 0.149183848 0.34015165 0.057738117 4.53E-10 9.344301203 2.529425186 FCSLGK(ac)ITTNQGVK ddPTM_HeLa_CUDC101_4h_R1 1 FCSLGKITTNQGVK 14 1 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 0 1 FCSLGK(1)ITTNQGVK 164.81 6.06E-18 0 0 0 83.723 0 0 0 0 0 168.2 0 FALSE TRUE FALSE 0 0 88.24931863 0 0 0 0 0 161.2667248 0 0 KGS(ph)GS(ph)EQEGEDEEGGER ddPTM_HeLa_CUDC101_4h_R1 3 KGSGSEQEGEDEEGGER 17 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 KGS(1)GS(1)EQEGEDEEGGER;KGS(1)GS(1)EQEGEDEEGGER;KGS(1)GS(1)EQEGEDEEGGER ;; 114.58 0.0012921 85475500 11726.3 10156.9 8876.9 9376.48 10952.6 10302 10295.7 9538.7 10685.2 11107.5 TRUE FALSE FALSE 10351.76089 10469.82205 9356.812065 9758.893383 10144.64852 10105.50651 10692.8086 10624.54705 10244.75153 11041.4321 0.937537885 0.948230443 0.847427397 0.883843083 0.918780139 0.915235128 0.96842588 0.962243571 0.927846265 1 13.43063968 -8.531303389 0.756800778 0.99586584 0.919569585 0.06027002 0.04007893 0.468037164 0.551250045 0.017796927 0.008374312 2.94E-09 8.531303389 -0.076296256 SLIPDIKPLAGQEAVVDLHADDS(ph)RISEDETER ddPTM_HeLa_CUDC101_4h_R1 1 SLIPDIKPLAGQEAVVDLHADDSRISEDETER 32 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SLIPDIKPLAGQEAVVDLHADDS(0.601)RIS(0.263)EDET(0.136)ER 44.529 0.014034 5656400 1193.3 799.84 839.75 971.81 849.89 1183.7 1046.1 853.83 1032.2 1339.8 TRUE FALSE FALSE 1053.423183 824.4821224 885.1494251 1011.444612 787.1953079 1161.122895 1086.448427 951.0265559 989.6522791 1331.83081 0.790958713 0.619059205 0.664611014 0.759439266 0.591062545 0.871824624 0.815755589 0.714074602 0.743076577 1 10.37919511 -8.531181977 0.820034088 0.983259567 0.72604937 0.072959578 0.111447297 0.292055348 0.403650402 0.037863127 0.018851377 2.94E-09 8.531181977 -0.257210196 FDDAVVQSDMK ddPTM_HeLa_CUDC101_4h_R1 2 FDDAVVQSDMK 11 0 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 131.11 0.009213 22181000 6016.4 6004.3 5982.3 5501.5 5787.7 6244.3 5007.1 5760.2 6074.1 5421.4 FALSE FALSE TRUE 5311.166712 6189.285366 6305.721233 5725.87495 5360.752902 6125.200381 5200.225524 6415.917884 5823.723027 5389.153272 0.985528977 1.148470837 1.170076432 1.06248137 0.994730087 1.136579361 0.964942963 1.190524292 1.080637854 1 12.3958429 -7.282305872 24.54667955 0.993166456 1.08970101 0.133999795 0.074403123 555.8177742 653844.5476 0.011177934 0.012789948 5.22E-08 7.282305872 0.096534554 FDDDKVSIVTPEDILR ddPTM_HeLa_CUDC101_4h_R1 2 FDDDKVSIVTPEDILR 16 1 A6NJA2;P54578-2;P54578-3;P54578 A6NJA2 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 0 0 ; ; 115.09 0.0012652 18992600 3884.5 3821.5 3647.6 3855.2 4463.1 3986.8 3518.5 3533.8 4584.8 5921 FALSE FALSE TRUE 3429.164799 3939.235885 3844.800289 4012.43172 4133.866005 3910.758432 3654.209724 3936.073508 4395.812603 5885.781629 0.582618421 0.669279993 0.653235293 0.681716036 0.702347838 0.664441646 0.620853772 0.668742702 0.746852819 1 12.5230183 -9.328765634 0.928346256 1.011376477 0.652599832 0.423132273 0.082483738 0.124554427 0.182459331 0.031420024 0.007324072 4.69E-10 9.328765634 -0.358776645 FDDGAGGDNEVQR ddPTM_HeLa_CUDC101_4h_R1 2 FDDGAGGDNEVQR 13 0 P35998;P35998-2 P35998 PSMC2 26S protease regulatory subunit 7 0 0 ; ; 185.3 3.07E-10 32820000 3792.8 3351.7 3101.1 3044.5 3504.5 3002.6 3212.1 3282.5 3095.8 3010.1 FALSE FALSE TRUE 3348.213734 3454.961904 3268.754846 3168.667869 3245.980017 2945.330408 3335.991773 3656.166532 2968.189814 2992.195791 1.118982168 1.154657698 1.092426791 1.05897745 1.084815381 0.984337461 1.114897555 1.221900834 0.991977137 1 11.54698886 -9.279397309 0.997967196 0.99975741 1.100126709 0.348334721 0.058387239 0.572232713 1.018110377 0.040679826 0.010908424 5.26E-10 9.279397309 0.100369299 FDEILEASDGIMVAR ddPTM_HeLa_CUDC101_4h_R1 2 FDEILEASDGIMVAR 15 0 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 190.78 1.52E-10 25872000 2991.3 2223.6 2348 2288.6 2631.7 2104.47 2018.7 1952.73 2467 2663.5 FALSE FALSE TRUE 2640.664349 2292.10648 2474.939982 2381.939 2437.564734 2064.330741 2096.561935 2175.02089 2365.309216 2647.657384 0.997358784 0.865711136 0.934765955 0.899640193 0.920649609 0.779681976 0.791855452 0.821488801 0.893359251 1 11.37050073 -5.888616219 0.446003687 1.00694784 0.761068707 0.486453952 0.052542383 0.497392971 0.160039711 0.012050251 0.052659829 1.29E-06 5.888616219 -0.245879134 NEEDEGHSNSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 NEEDEGHSNSSPR 13 0 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 NEEDEGHS(0.001)NS(0.235)S(0.764)PR 142.4 0.00043143 31313000 9139.3 1843.3 6820.1 7212.8 3140.7 3084.1 3446.8 1157.2 7877.4 13624 TRUE FALSE FALSE 8068.005108 1900.089888 7188.815236 7506.96916 2909.016818 3025.275931 3579.744231 1288.93097 7552.690238 13542.96384 0.59573408 0.140300891 0.530815508 0.554307702 0.214799128 0.223383594 0.264325023 0.095173478 0.557683704 1 13.72525588 -8.529339315 0.192196881 1.42143521 1.87E-17 0.44946379 0.197044126 1.747386934 0.162519423 0.775270445 0.330484439 2.96E-09 8.529339315 -1.42143521 LHVGNISPTCT(ph)NK ddPTM_HeLa_CUDC101_4h_R1 1 LHVGNISPTCTNK 13 0 E9PB51;Q9BWF3;D6R9K7;J3QRR5;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2 E9PB51 RBM4 RNA-binding protein 4 1 0 LHVGNIS(0.092)PT(0.307)CT(0.602)NK 144.51 0.0028404 84017000 4317.3 4014.1 4105.6 4186.8 4449.6 3874 3671.8 4003.1 4229.8 2912.8 TRUE FALSE FALSE 3811.232639 4137.769663 4327.561155 4357.555801 4121.361873 3800.109905 3813.422556 4458.796723 4055.445854 2895.474536 1.3162722 1.42904716 1.49459479 1.504953936 1.423380459 1.31243078 1.317028525 1.539919163 1.400615272 1 11.49958409 -8.528730038 0.6373451 1.00330084 1.430110214 0.086105822 0.140383331 0.236674959 0.196768911 0.04887206 0.020399362 2.96E-09 8.528730038 0.426809375 AKADS(ph)PVNGLPK ddPTM_HeLa_CUDC101_4h_R1 1 AKADSPVNGLPK 12 1 Q96S94;Q96S94-3;A0A0A0MSF3 Q96S94 CCNL2 Cyclin-L2 1 0 AKADS(1)PVNGLPK 74.783 0.025884 133660000 5726.3 5609.9 5220 5139.8 5468.8 5198 4899.5 5733.5 5523.6 4109.5 TRUE FALSE FALSE 5055.071795 5782.73437 5502.20899 5349.42326 5065.377519 5098.85681 5088.475356 6386.178464 5295.91487 4085.056511 1.237454557 1.415582466 1.346911352 1.309510222 1.239977343 1.248172895 1.24563157 1.563302355 1.296411654 1 11.99614032 -8.528019809 0.641983483 1.001621422 1.32962863 0.095987813 0.130091027 0.356203331 0.300652061 0.056595887 0.023758675 2.96E-09 8.528019809 0.328007208 NEPADYAT(ph)LYYREHSRAGDFSK ddPTM_HeLa_CUDC101_4h_R1 1 NEPADYATLYYREHSRAGDFSK 22 2 O15049 O15049 N4BP3 NEDD4-binding protein 3 1 0 NEPADY(0.01)AT(0.976)LY(0.012)Y(0.002)REHSRAGDFSK 64.265 0.0078624 51433000 4258.3 4381.7 4091.1 4109.9 3462.3 3576.7 3279.6 3924.8 4226.6 3267.7 TRUE FALSE FALSE 3759.148529 4516.694983 4312.277241 4277.519487 3206.893027 3508.480407 3406.095271 4371.583367 4052.377759 3248.263575 1.157279402 1.390495223 1.327563833 1.316863422 0.987263796 1.080109519 1.048589559 1.345821626 1.247552012 1 11.66545299 -8.527294527 1.064485743 1.021134874 1.200030213 0 0.149658724 0.512251847 1.179892761 0.047991641 0.028092904 2.97E-09 8.527294527 0.178895339 QT(ph)ERIQMINGS(ph)DLPK ddPTM_HeLa_CUDC101_4h_R1 1 QTERIQMINGSDLPK 15 1 Q96GA3 Q96GA3 LTV1 Protein LTV1 homolog 2 0 QT(1)ERIQMINGS(1)DLPK 69.352 0.0024785 0 630.7 500.1 421.91 465.52 548.75 367.8 408.63 435.44 456.27 782.11 TRUE FALSE FALSE 556.7703021 515.5074882 444.7197308 484.5059177 508.2698058 360.7848278 424.390996 485.0087295 437.4623575 777.4579749 0.716141991 0.663067979 0.57201771 0.623192421 0.653758559 0.464057016 0.545870014 0.623839159 0.562682964 1 9.602620883 -8.526324185 0.357629864 1.078069858 0.540119556 0 0.14437247 0.353720382 0.091316681 0.076816202 0.025890636 2.98E-09 8.526324185 -0.537950302 FDREVDIGIPDATGR ddPTM_HeLa_CUDC101_4h_R1 1 FDREVDIGIPDATGR 15 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 106.3 0.0040508 6413500 1319.9 1333.2 1290.5 1258.1 1817.6 1653.9 1464.4 1428.5 1794.6 1644.3 FALSE FALSE TRUE 1165.183323 1374.274312 1360.268334 1309.410756 1683.519269 1622.354613 1520.882399 1591.114666 1720.625828 1634.51963 0.712859791 0.840781772 0.832212907 0.801098214 1.029978006 0.992557436 0.93047668 0.973444819 1.052679819 1 10.67465099 -5.761354621 25 0.852640616 0.978743213 0.222005845 0.094687533 2.621623237 772741.2538 0.016138464 0.030698985 1.73E-06 5.761354621 0.126102598 ARVDHGAEIITQS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 2 ARVDHGAEIITQSPGR 16 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 ARVDHGAEIIT(0.001)QS(0.999)PGR;ARVDHGAEIIT(0.135)QS(0.865)PGR ; 121.48 0.00030604 177003000 3467.9 3978.2 3933.7 3592.7 3722.7 3302 3095.14 3343 3924.6 1372.28 TRUE FALSE FALSE 3061.398019 4100.763627 4146.367721 3739.225835 3448.083838 3239.019852 3214.520587 3723.553607 3762.826327 1364.117618 2.24423318 3.006165725 3.039596929 2.741131547 2.527702739 2.374443237 2.356483448 2.729642634 2.758432468 1 10.41375233 -8.525698525 0.740340695 1.068181822 2.658843481 0 0.576625132 0.184339712 0.207988947 0.145390376 0.067686311 2.98E-09 8.525698525 1.590661659 (ac)ASEDNRVPSPPPT(ph)GDDGGGGGREETPTEGGALSLKPGLPIR ddPTM_HeLa_CUDC101_4h_R1 1 ASEDNRVPSPPPTGDDGGGGGREETPTEGGALSLKPGLPIR 41 3 E9PEM5;A0A494C1L5;P50851-2;P50851;A0A494C0R9 E9PEM5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 AS(0.195)EDNRVPS(0.195)PPPT(0.575)GDDGGGGGREET(0.03)PT(0.006)EGGALSLKPGLPIR 45.021 1.10E-05 297220000 1116.5 996.94 919.38 992.92 1378.3 967.78 1066.2 758.84 840.12 837.96 TRUE FALSE FALSE 985.6255625 1027.65454 969.0844638 1033.415569 1276.625555 949.3212089 1107.323691 845.2232783 805.489898 832.9757767 1.183258373 1.233714795 1.163400534 1.240630998 1.532608259 1.139674449 1.329358815 1.014703311 0.967002788 1 9.702130732 -8.524758326 0.540299937 0.992330783 1.253360938 0.371083932 0.127924201 0.758208482 0.448640939 0.092090469 0.034748862 2.99E-09 8.524758326 0.261030155 HPS(ph)SPSALR ddPTM_HeLa_CUDC101_4h_R1 2 HPSSPSALR 9 0 O60504-2;O60504;H0YAZ3;H0YB51 O60504-2 SORBS3 Vinexin 1 0 HPS(0.993)S(0.007)PSALR;HPS(0.942)S(0.056)PS(0.001)ALR ; 116.55 0.0015506 28199000 1501.19 1179.23 993.58 1090.07 1374.49 1201.45 1345.11 1272.16 1375 1622.87 TRUE FALSE FALSE 1325.222784 1215.560679 1047.29594 1134.527766 1273.096611 1178.534343 1396.991343 1416.977552 1318.321918 1613.217097 0.821478266 0.753500989 0.649197149 0.703270359 0.789166327 0.730549128 0.865966116 0.878355154 0.817200562 1 10.65572489 -8.524557863 0.789126263 0.986764451 0.766757412 0.203572169 0.08487069 0.305513893 0.391705488 0.033620725 0.016391321 2.99E-09 8.524557863 -0.220007039 QQFS(ph)PSMTER ddPTM_HeLa_CUDC101_4h_R1 1 QQFSPSMTER 10 0 Q8TDB6 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 1 0 QQFS(0.652)PS(0.32)MT(0.028)ER 126.34 0.0032845 11232000 2891 1894.5 2365.4 1991.5 2311.6 2120.1 1664 1608.5 2743.4 3253.2 TRUE FALSE FALSE 2552.121362 1952.867299 2493.280679 2072.721978 2141.077873 2079.662625 1728.181037 1791.605138 2630.315891 3233.849822 0.789189821 0.603883114 0.770994578 0.640945651 0.662083273 0.6430919 0.534403616 0.554016184 0.813369833 1 11.65903697 -8.521621553 0.153000713 1.300538848 0.400536582 0.654097949 0.079336896 1.849245021 0.127490198 0.478972544 0.233405295 3.01E-09 8.521621553 -0.900002266 ARS(ph)APPMEGAR ddPTM_HeLa_CUDC101_4h_R1 2 ARSAPPMEGAR 11 1 Q86YD1 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 0 ARS(1)APPMEGAR;ARS(1)APPMEGAR ; 68.262 0.035937 18324800 1605.45 1666.49 1479.52 1468.87 2038.42 1558.35 1389.95 1172.49 1271.72 972.09 TRUE FALSE FALSE 1417.261585 1717.832582 1559.507327 1528.776868 1888.049818 1528.62707 1443.560837 1305.961522 1219.299163 966.3079654 1.466676914 1.77772785 1.613882305 1.582080374 1.953880011 1.581925354 1.493893136 1.351496178 1.261812183 1 9.916339244 -8.5211569 0.71476306 1.02144379 1.626587232 0.533070683 0.172705883 0.283576538 0.298397137 0.084509706 0.038526534 3.01E-09 8.5211569 0.605143442 FDVPGDENAEMDAR ddPTM_HeLa_CUDC101_4h_R1 2 FDVPGDENAEMDAR 14 0 P46940;H0YLE8 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 0 ; ; 211.22 4.75E-23 5247700 1816.01 1939.93 1375.84 1454.22 1617.84 1696.18 1482.9 1370.18 1976.25 2169.5 FALSE FALSE TRUE 1603.140061 1999.696944 1450.222072 1513.529377 1498.495166 1663.828193 1540.09595 1526.155753 1894.788139 2156.595718 0.74336606 0.927247016 0.672458941 0.701814144 0.694842874 0.771506768 0.714132898 0.707668916 0.878601457 1 11.07454003 -10.76591789 0.263775367 1.351075253 0.702314806 0.526811675 0.07399331 4.45617379 0.20900297 0.972292017 0.040041536 1.71E-11 10.76591789 -0.648760448 LQIGPPS(ph)PGEAQGPLLPSPAR ddPTM_HeLa_CUDC101_4h_R1 2 LQIGPPSPGEAQGPLLPSPAR 21 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 LQIGPPS(1)PGEAQGPLLPSPAR;LQIGPPS(0.969)PGEAQGPLLPS(0.031)PAR ; 99.11 0.00018915 0 1830.53 1173.29 1294.29 1492.19 1834.35 1658.76 1523.04 1475.53 1121.47 1906.6 TRUE FALSE FALSE 1615.958048 1209.437674 1364.263232 1553.047958 1699.033655 1627.121917 1581.784163 1643.498371 1075.242532 1895.259458 0.85263157 0.638138313 0.71982927 0.819438178 0.896464939 0.858521987 0.834600327 0.867162733 0.567332629 1 10.88817965 -8.520996321 1.021960429 0.98119015 0.810600246 0 0.149846132 0.326283826 0.694672389 0.02887306 0.016614759 3.01E-09 8.520996321 -0.170589905 VETVSQPSES(ph)PKDTIDK ddPTM_HeLa_CUDC101_4h_R1 1 VETVSQPSESPKDTIDK 17 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 VETVS(0.002)QPS(0.203)ES(0.791)PKDT(0.004)IDK 69.765 0.014502 9080800 950.34 719 635.53 777.62 667.74 846 439.18 862.34 1352.6 1157.2 TRUE FALSE FALSE 838.9425858 741.1515378 669.8886742 809.3347048 618.4821505 829.8639595 456.1193197 960.5052999 1296.845255 1150.316923 0.729314304 0.644302038 0.582351403 0.703575414 0.537662394 0.721422021 0.396516221 0.834991889 1.127380837 1 10.16781568 -8.519434988 0.50689109 1.02096568 0.60893713 0.651794906 0.120918739 0.441373331 0.229375987 0.083052236 0.030475366 3.02E-09 8.519434988 -0.41202855 FEDEDSDDVPR ddPTM_HeLa_CUDC101_4h_R1 2 FEDEDSDDVPR 11 0 P49756 P49756 RBM25 RNA-binding protein 25 0 0 ; ; 167.67 5.86E-05 26769000 4796.3 3281.3 3277.2 3377.7 3180.1 3661.9 2955.6 2776.1 3449.5 4036.1 FALSE FALSE TRUE 4234.084985 3382.392964 3454.375345 3515.457206 2945.510359 3592.055359 3069.598482 3092.120003 3307.31015 4012.093098 1.055330692 0.843049471 0.860990825 0.876215262 0.734158028 0.895307081 0.765086554 0.770699963 0.824335346 1 11.97013937 -7.208910349 5.330246217 1.026163887 0.82049806 0.295353467 0.081203853 0.068321061 4.414037322 0.008510851 0.010383044 6.18E-08 7.208910349 -0.205665827 FEDENFILK ddPTM_HeLa_CUDC101_4h_R1 4 FEDENFILK 9 0 P62937;F8WE65;C9J5S7;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ;;; ;;; 168.26 4.12E-06 273025000 13050.9 11028.6 10511.5 9671.1 10007.7 9852.3 9620 8220 10830.3 11869.5 FALSE FALSE TRUE 11521.09329 11368.37809 11079.78349 10065.52926 9269.451909 9664.383793 9991.046622 9155.731574 10383.87045 11798.89969 0.976454889 0.963511717 0.939052266 0.853090502 0.785620029 0.819091953 0.846777826 0.775981813 0.880071085 1 13.52636471 -6.324704646 1.638585447 0.987906198 0.808863016 0.73571845 0.039578627 0.059077077 0.310544871 0.003371998 0.005950179 4.73E-07 6.324704646 -0.179043182 NGIGPGSHSEFAAS(ph)IGSPK ddPTM_HeLa_CUDC101_4h_R1 1 NGIGPGSHSEFAASIGSPK 19 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 NGIGPGSHSEFAAS(0.5)IGS(0.5)PK 112.88 0.00014694 14555000 2831.5 2365.9 2314 1913.9 2742.9 2476.3 2339.9 1975 2506 2893.5 TRUE FALSE FALSE 2499.595862 2438.790575 2439.101839 1991.957115 2540.561732 2429.068703 2430.150727 2199.826017 2402.701619 2876.289333 0.869034917 0.847894732 0.84800295 0.692544068 0.883277528 0.844514728 0.844890915 0.764813884 0.835347679 1 11.48999309 -8.518408853 0.484272656 1.012286868 0.810531238 0.0951358 0.071065312 0.495192077 0.234373376 0.044998572 0.016190621 3.03E-09 8.518408853 -0.201755631 FEEESKEPVADEEEEDSDDDVEPITEFR ddPTM_HeLa_CUDC101_4h_R1 2 FEEESKEPVADEEEEDSDDDVEPITEFR 28 1 P54105;E9PJF4 P54105 CLNS1A Methylosome subunit pICln 0 0 ; ; 162.75 1.67E-16 55115000 6975.1 6229.4 6041.5 5175.7 5460.8 3954.4 4448.7 5535.6 5259.4 3201.7 FALSE FALSE TRUE 6157.489352 6421.32043 6368.121765 5386.787417 5057.967663 3878.976408 4620.287849 6165.750328 5042.605306 3182.656146 1.934701416 2.017597923 2.000882745 1.692544582 1.58922844 1.218785892 1.451708145 1.937297039 1.584401542 1 11.63601558 -9.360301697 1.099268098 1.002540651 1.730953495 0.161989821 0.300684946 0.3383595 0.73545806 0.187070343 0.0492911 4.36E-10 9.360301697 0.728412844 FEELCSDLFR ddPTM_HeLa_CUDC101_4h_R1 2 FEELCSDLFR 10 0 P17066;P48741;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 P17066;A0A0G2JIW1 HSPA6;HSPA7;HSPA1B;HSPA1A Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 155.42 8.17E-06 30470000 3585.1 2906.5 2272.12 2767.3 2799.1 2574.81 2159.71 2396.7 2457.66 1494.8 FALSE FALSE TRUE 3164.860013 2996.04582 2394.95768 2880.162455 2592.61597 2525.699789 2243.010738 2669.53064 2356.354215 1485.908863 2.129915294 2.016305235 1.611779659 1.938317031 1.744801471 1.699767632 1.509521071 1.796564181 1.585799959 1 10.53712992 -9.440848787 1.16760675 0.999159736 1.826285878 0.320553137 0.247286022 0.214195099 0.521481471 0.142707134 0.035485523 3.62E-10 9.440848787 0.827126142 FEELNADLFR ddPTM_HeLa_CUDC101_4h_R1 4 FEELNADLFR 10 0 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2;P54652 P11142;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 ;;; ;;; 196.27 5.36E-16 110659600 15193.9 10945.6 8107.1 9710.6 10211.6 10501.9 9381.4 9127.6 9703.6 9572 FALSE FALSE TRUE 13412.89407 11282.82096 8545.394349 10106.64024 9458.310612 10301.59375 9743.243741 10166.64909 9303.613501 9515.065318 1.409648134 1.185784919 0.898090981 1.06217245 0.994035279 1.082661381 1.023980752 1.068479169 0.977777155 1 13.21599784 -6.873639491 9.278877764 1.198835685 1.025224627 0.129509529 0.125118286 0.326608074 25.52362123 0.025459529 0.033486531 1.34E-07 6.873639491 -0.173611059 FEETTADGR ddPTM_HeLa_CUDC101_4h_R1 1 FEETTADGR 9 0 I6L8B7;Q01469 I6L8B7 FABP5 "Fatty acid-binding protein, epidermal" 0 0 141.52 0.0091952 15056000 3332 2829.7 2655.9 2736.3 2650.9 2804.6 2686 2486.4 3094.2 3399.2 FALSE FALSE TRUE 2941.428011 2916.879703 2799.485988 2847.898141 2455.348388 2751.106928 2789.59992 2769.441726 2966.655766 3378.981407 0.870507309 0.863242306 0.828499968 0.842827408 0.726653418 0.814182322 0.825574214 0.819608454 0.877973392 1 11.7223727 -8.43988599 0.380393004 1.026123802 0.795079547 0.465578536 0.04755366 0.414839502 0.126386979 0.039665863 0.014615244 3.63E-09 8.43988599 -0.231044255 TSSFT(ph)EQLDEGTPNR ddPTM_HeLa_CUDC101_4h_R1 1 TSSFTEQLDEGTPNR 15 0 Q13439-3;Q13439-4;Q13439;Q13439-5;E7EVX2;Q86W71;C9J0Y3;C9JHJ5 Q13439-3 GOLGA4 Golgin subfamily A member 4 1 0 T(0.051)S(0.008)S(0.326)FT(0.614)EQLDEGTPNR 284.24 1.42E-102 95981000 2407.5 1977.8 1836.4 2028.7 1838.1 1861.4 2371.4 2288.3 2096.9 2305.4 TRUE FALSE FALSE 2125.2965 2038.733674 1935.681339 2111.439155 1702.507025 1825.896896 2462.865692 2548.790822 2010.464894 2291.687378 0.927393727 0.889621199 0.844653314 0.921346941 0.742905442 0.796747808 1.074695317 1.11218958 0.877285843 1 11.16219454 -8.517978175 0.903607686 0.992239902 0.906839694 0 0.112772531 1.021546052 1.712114679 0.044352472 0.023797198 3.03E-09 8.517978175 -0.085400208 SAGAENPRPFS(ph)PPRAPPPPPPPPPPPPR ddPTM_HeLa_CUDC101_4h_R1 1 SAGAENPRPFSPPRAPPPPPPPPPPPPR 28 2 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(0.239)AGAENPRPFS(0.761)PPRAPPPPPPPPPPPPR 46.295 0.016864 21867000 913.44 724.51 702.68 849.75 817 736.71 682.38 843.7 890.37 882.59 TRUE FALSE FALSE 806.3679479 746.8312943 740.6690063 884.4064779 756.7315377 722.6584842 708.6996252 939.7433976 853.6685717 877.3403154 0.919105088 0.851244701 0.844220872 1.008054072 0.862529083 0.823692325 0.807781898 1.071127567 0.973018744 1 9.776992754 -8.516905468 0.752506381 0.995272284 0.890918214 0.15735293 0.079651964 0.703356573 0.821495409 0.036373059 0.017265608 3.04E-09 8.516905468 -0.10435407 FEHCNFNDVTTR ddPTM_HeLa_CUDC101_4h_R1 1 FEHCNFNDVTTR 12 0 E9PNW4;A0A2U3TZL5;P13987;P13987-2 E9PNW4 CD59 CD59 glycoprotein 0 0 91.093 0.018557 7939300 3859.8 2832.9 3163.6 3347.7 2585.5 3355.2 2632.2 2683.5 2605.9 1462.2 FALSE FALSE TRUE 3407.360095 2920.178291 3334.633785 3484.233676 2394.772816 3291.20515 2733.724836 2988.978793 2498.483699 1453.502769 2.344240525 2.009062764 2.294205319 2.397129025 1.647587378 2.264326714 1.880784057 2.05639704 1.718939758 1 10.5053181 -9.320540097 0.938450293 0.969013558 2.120323714 0.428049351 0.306109006 0.211817792 0.319762337 0.171677798 0.040929652 4.78E-10 9.320540097 1.151310157 FEIGEGENLDLPYGLER ddPTM_HeLa_CUDC101_4h_R1 4 FEIGEGENLDLPYGLER 17 0 Q02790 Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" 0 0 ;;; ;;; 237.07 7.76E-43 80486000 6173.4 5846.5 5007.79 5358.75 6389.5 5343.8 5604.21 5515.1 6547.6 6352.1 FALSE FALSE TRUE 5449.76341 6026.623735 5278.526275 5577.302987 5918.159315 5241.875918 5820.366257 6142.916691 6277.705157 6314.317427 0.863080368 0.954437879 0.835961501 0.883278842 0.937260343 0.830157175 0.921772832 0.972855223 0.994201706 1 12.62441107 -9.416669132 1.051535754 1.002232535 0.89558153 0.415926633 0.04579376 0.413152595 0.789137753 0.033783506 0.007840197 3.83E-10 9.416669132 -0.106651006 NWTEDMEGGISS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 NWTEDMEGGISSPVK 15 0 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 0 NWTEDMEGGIS(0.22)S(0.78)PVK;NWTEDMEGGIS(0.229)S(0.771)PVK ; 152.11 0.00017772 106604000 12283.7 9993.3 9830.5 9487.2 10816 10551.1 9459.5 9914.2 11104.3 12592.9 TRUE FALSE FALSE 10843.82331 10301.18173 10361.96657 9874.129023 10018.12523 10349.85535 9824.356084 11042.79245 10646.57605 12517.99687 0.866258669 0.822909754 0.82776555 0.788794655 0.80029779 0.826798046 0.784818544 0.882153316 0.850501575 1 13.6117161 -8.516600726 0.543189045 1.006029155 0.811200739 0.237499293 0.052234635 0.217082243 0.130296174 0.019676772 0.00750965 3.04E-09 8.516600726 -0.194828416 FEK(ac)EAAEMGK ddPTM_HeLa_CUDC101_4h_R1 3 FEKEAAEMGK 10 1 Q5VTE0;P68104;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01;A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5 Q5VTE0;A0A2U3TZH3 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 1 ;; FEK(1)EAAEMGK;FEK(1)EAAEMGK;FEK(1)EAAEMGK 158.41 0.00050474 4517900 3677.6 2580.7 2060.7 1760.62 3935.2 3136.3 3222.8 3818.9 3244.4 2976.7 FALSE TRUE FALSE 3246.517303 2660.208308 2172.107675 1832.425694 3644.908136 3076.480303 3347.104476 4253.628139 3110.664459 2958.994456 1.097169106 0.899024431 0.734069532 0.619273108 1.231806342 1.039704653 1.131162807 1.437524876 1.051257278 1 11.53089128 -3.933975551 1.152596361 0.991587282 1.965151051 0.427803706 0.168478619 2.624199106 1.720256883 0.027203072 3.680789734 0.000116419 3.933975551 0.97356377 FELINIDDLEDDPVVNGER ddPTM_HeLa_CUDC101_4h_R1 1 FELINIDDLEDDPVVNGER 19 0 Q9BQ70;H3BMJ8;Q9H7D3;H3BSP8;H3BTU3 Q9BQ70 TCF25 Transcription factor 25 0 0 203.2 1.07E-16 37251000 476.45 623.86 506.33 405.84 452.58 384.63 407.14 285.2 502.12 499.38 FALSE FALSE TRUE 420.6012533 643.0803871 533.7037314 422.3919094 419.1940751 377.2938236 422.8435262 317.6660152 481.4224011 496.4096656 0.847286591 1.295463066 1.075127598 0.850893805 0.844451879 0.760045281 0.851803572 0.639927135 0.969808677 1 8.955387396 -5.83483082 2.324163672 0.96853978 0.769468685 0.448419997 0.128194389 0.295432507 3.250760017 0.021668127 0.044615825 1.46E-06 5.83483082 -0.199071095 TVAT(ph)PLNQVANPNSAIFGGAR ddPTM_HeLa_CUDC101_4h_R1 1 TVATPLNQVANPNSAIFGGAR 21 0 Q15056;Q15056-2 Q15056 EIF4H Eukaryotic translation initiation factor 4H 1 0 TVAT(1)PLNQVANPNSAIFGGAR 144.33 3.77E-06 18102000 1453.1 1044.1 1053.5 795.43 985.57 1117.1 673.57 237.35 1187.9 1364.4 TRUE FALSE FALSE 1282.769821 1076.267483 1110.455397 827.8710735 912.8664646 1095.793179 699.5498205 264.3689646 1138.934259 1356.284488 0.945797015 0.793541099 0.818748136 0.61039633 0.673064149 0.807937559 0.515783987 0.194921469 0.839745842 1 10.40544411 -4.610668211 0.333809778 1.00502057 7.09E-13 0.717743089 0.11858864 1.835776031 0.172174347 0.043151279 0.720245222 2.45E-05 4.610668211 -1.00502057 down VPVPGPGS(ph)GGNGPER ddPTM_HeLa_CUDC101_4h_R1 2 VPVPGPGSGGNGPER 15 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 VPVPGPGS(1)GGNGPER;VPVPGPGS(1)GGNGPER ; 108.14 0.002907 78783000 2206.5 1811.76 1686.68 1526.65 1622.06 1894.99 1793.67 1937.27 2219.9 2442.5 TRUE FALSE FALSE 1947.857415 1867.578178 1777.867023 1588.913386 1502.403865 1858.846223 1862.852453 2157.800986 2128.394782 2427.971901 0.802256984 0.769192665 0.732243656 0.654420006 0.618789643 0.765596267 0.767246298 0.888725683 0.876614256 1 11.24553601 -8.516344235 0.625058539 0.997811268 0.733214988 0.475907741 0.077300579 0.35531745 0.284919499 0.045161388 0.018827106 3.05E-09 8.516344235 -0.26459628 NLLEENFEEHSMS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 1 NLLEENFEEHSMSPER 16 0 P38398-8;P38398-4;P38398;P38398-7;Q5YLB2 P38398-8 BRCA1 Breast cancer type 1 susceptibility protein 1 0 NLLEENFEEHS(0.169)MS(0.831)PER 142.27 0.00019166 6770400 2548.9 2099.4 1753.8 1564.7 1971.2 1839.9 1800.6 1365.7 2503.3 3270.5 TRUE FALSE FALSE 2250.121806 2164.080026 1848.615733 1628.515229 1825.788503 1804.806973 1870.049745 1521.165768 2400.112914 3251.046921 0.692122218 0.66565635 0.568621671 0.500920248 0.56160017 0.555146393 0.575214628 0.467900281 0.738258467 1 11.66668866 -8.514592493 0.356585589 1.08318251 0.502841004 0.646672675 0.086888922 0.241560814 0.062437195 0.056552723 0.019294586 3.06E-09 8.514592493 -0.580341505 DGDSYDPYDFS(ph)DT(ph)EEEMPQVHTPK ddPTM_HeLa_CUDC101_4h_R1 5 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 2 0 DGDSY(0.001)DPY(0.01)DFS(0.994)DT(0.979)EEEMPQVHT(0.016)PK;DGDS(0.001)Y(0.001)DPY(0.017)DFS(0.981)DT(0.849)EEEMPQVHT(0.151)PK;DGDS(0.02)Y(0.073)DPY(0.247)DFS(0.723)DT(0.613)EEEMPQVHT(0.323)PK;DGDS(0.002)Y(0.002)DPY(0.04)DFS(0.949)DT(0.875)EEEMPQVHT(0.131)PK;DGDS(0.009)Y(0.015)DPY(0.076)DFS(0.972)DT(0.925)EEEMPQVHT(0.003)PK ;;;; 88.755 3.73E-05 329512000 12033.9 10036.1 9502.77 9571.73 11793.8 10190.79 9574.83 9320.23 11902.6 11709.5 TRUE FALSE FALSE 10623.30448 10345.30035 10016.51849 9962.106522 10923.79487 9996.41766 9944.1344 10381.20731 11411.96979 11639.85137 0.912666678 0.888782856 0.860536631 0.855862004 0.938482333 0.858809734 0.854317988 0.891867686 0.980422294 1 13.50678502 -8.512363219 0.507307205 1.006754993 0.873062631 0.753721915 0.025018678 0.336782111 0.175851422 0.020545178 0.007597518 3.07E-09 8.512363219 -0.133692363 FEPYANPTK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 FEPYANPTKR 10 1 A0A087X0X3;P52272-2;P52272;M0R2T0;M0QYQ7;M0R0N3;M0R019;M0R0Y6 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 1 ; FEPYANPTK(1)R;FEPYANPTK(1)R 94.692 0.014679 6487700 1818.35 960.08 889.63 874.91 1600.11 1378.29 1457.95 1212.98 1479.7 1037.5 FALSE TRUE FALSE 1605.205769 989.6589268 937.7260888 910.5926115 1482.073073 1352.001415 1514.18362 1351.06074 1418.70614 1031.328904 1.556444082 0.959595841 0.909240578 0.88293134 1.437051815 1.310931372 1.468186933 1.310019272 1.375609793 1 10.01028878 -9.780804722 1.768009791 0.999586906 1.279172348 0 0.258348042 0.617668953 3.494774834 0.195706273 0.041393629 1.66E-10 9.780804722 0.279585442 FERPDGSHFDVR ddPTM_HeLa_CUDC101_4h_R1 2 FERPDGSHFDVR 12 1 B4DEM9;Q9Y2S7 B4DEM9 POLDIP2 Polymerase delta-interacting protein 2 0 0 ; ; 92.247 0.010509 15159800 8427.1 6980.4 6232.7 6465.9 7701.9 6742.4 6329 5460.3 6412.8 7582.3 FALSE FALSE TRUE 7439.288113 7195.45785 6569.658615 6729.60735 7133.746181 6613.799954 6573.11165 6081.878481 6148.46167 7537.200142 0.987009496 0.954659252 0.871631175 0.892852415 0.94647164 0.877487638 0.872089307 0.806914818 0.81574876 1 12.87981299 -3.921543266 0.216270617 1.019880062 0.632015665 0 0.066786044 4.975658219 0.177278697 0.031389426 0.534200334 0.0001198 3.921543266 -0.387864397 ALQESATGQPEPTSS(ph)PDNKPFK ddPTM_HeLa_CUDC101_4h_R1 2 ALQESATGQPEPTSSPDNKPFK 22 1 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 ALQESATGQPEPT(0.003)S(0.1)S(0.898)PDNKPFK;ALQESATGQPEPT(0.319)S(0.319)S(0.361)PDNKPFK ; 112.28 7.23E-06 28645000 4973.2 3826.67 4149.8 3698.03 3903.42 4317.7 4290.3 4391.3 4419.6 5055.7 TRUE FALSE FALSE 4390.249035 3944.565167 4374.15074 3848.851648 3615.472483 4235.347066 4455.778308 4891.187842 4237.422217 5025.628472 0.873572143 0.784889928 0.870368903 0.765844843 0.719407036 0.842749736 0.886611164 0.973248992 0.843162649 1 12.29508831 -8.511263153 0.756615121 0.991856095 0.831819517 0.028053616 0.081367838 0.423744832 0.500914787 0.033568024 0.016075324 3.08E-09 8.511263153 -0.160036579 FESLEPEMNNQASR ddPTM_HeLa_CUDC101_4h_R1 1 FESLEPEMNNQASR 14 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 158.47 0.00028542 7248300 2491.1 1861.1 1833.5 1939.4 1991 1916.4 1993.6 1861.7 2021.8 2083.4 FALSE FALSE TRUE 2199.097034 1918.438285 1932.624556 2018.497115 1844.127897 1879.847863 2070.49382 2073.628403 1938.460548 2071.007844 1.061848723 0.926330767 0.933180703 0.974644843 0.890449499 0.907697124 0.9997518 1.001265354 0.935998651 1 11.0161173 -7.256110511 24.98885721 1.029206342 0.946372469 0.11461414 0.04739934 292.9308963 1373653.299 0.007033233 0.008483569 5.54E-08 7.256110511 -0.082833872 ALQESATGQPEPTS(ph)SPDNKPFK ddPTM_HeLa_CUDC101_4h_R1 2 ALQESATGQPEPTSSPDNKPFK 22 1 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 ALQESATGQPEPT(0.054)S(0.473)S(0.473)PDNKPFK;ALQESAT(0.002)GQPEPT(0.108)S(0.508)S(0.382)PDNKPFK ; 115.38 3.70E-06 30406000 6546.4 5075.5 5164.8 5284.7 4975.1 5238.7 5219.5 5518.7 6090 7049 TRUE FALSE FALSE 5779.040916 5231.870139 5444.024711 5500.232908 4608.096785 5138.780526 5420.817863 6146.926501 5838.967622 7007.072235 0.824744019 0.746655659 0.776932866 0.784954504 0.657635119 0.733370565 0.773620948 0.877246059 0.833296336 1 12.77459605 -8.511043136 0.589502942 1.002336872 0.756050548 0.321596496 0.072128588 0.309225288 0.220209504 0.036090279 0.014552568 3.08E-09 8.511043136 -0.246286324 LT(ph)T(ph)EFVDVMGGLDGDMFNYYK ddPTM_HeLa_CUDC101_4h_R1 1 LTTEFVDVMGGLDGDMFNYYK 21 0 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;Q9UBF8-3;H0Y4F8;H0YCW3;A6PVV8 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 2 0 LT(1)T(1)EFVDVMGGLDGDMFNYYK 49.425 0.037103 27881000 1446.9 1240.6 946.58 1186.2 1490.6 1292.3 1005.6 1211.5 1315.5 1460.2 TRUE FALSE FALSE 1277.296575 1278.821416 997.754978 1234.578363 1380.641408 1267.651531 1044.386329 1349.412263 1261.274533 1451.514665 0.879974971 0.881025487 0.687388837 0.850544877 0.951172896 0.873330157 0.719514831 0.929658029 0.868936817 1 10.50334343 -8.507979771 0.679498091 0.995689738 0.83838106 0.079716664 0.087561171 0.553221631 0.527251495 0.042338874 0.018850493 3.10E-09 8.507979771 -0.157308678 FFDANYDGKDYDPVAAR ddPTM_HeLa_CUDC101_4h_R1 1 FFDANYDGKDYDPVAAR 17 1 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 0 0 69.045 0.033272 42758000 927.36 813.42 1056.6 1061.9 1109.6 1098 1022 1102.8 1216.3 1106.6 FALSE FALSE TRUE 818.6562666 838.4805061 1113.722992 1105.208872 1027.747019 1077.057479 1061.418882 1228.338294 1166.163599 1100.017894 0.744220863 0.762242606 1.012458977 1.004718994 0.934300273 0.979127235 0.96491056 1.116653012 1.060131481 1 10.10331128 -6.73222709 24.9979346 0.867067565 0.996343878 0.208710717 0.10048001 230.8121087 197513.187 0.017488484 0.024730239 1.85E-07 6.73222709 0.129276313 GLNGCES(ph)PDADDYFEHS(ph)PLSEDR ddPTM_HeLa_CUDC101_4h_R1 2 GLNGCESPDADDYFEHSPLSEDR 23 0 Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 2 0 GLNGCES(0.995)PDADDY(0.005)FEHS(0.968)PLS(0.032)EDR;GLNGCES(0.986)PDADDY(0.015)FEHS(0.987)PLS(0.013)EDR ; 118.37 1.10E-06 7965900 3576.61 3167.5 3365.85 2984.26 3187.98 3120.63 3042.73 2979.81 3682.9 3054.66 TRUE FALSE FALSE 3157.365198 3265.086921 3547.818032 3105.971022 2952.809067 3061.109182 3160.089115 3319.019526 3531.089303 3036.490746 1.039807285 1.075283014 1.168394152 1.022881768 0.972441319 1.008107529 1.040704346 1.093044505 1.162884921 1 11.56818926 -8.50496418 1.086237316 1.005663862 1.050771805 0 0.070634262 0.760137324 1.823767944 0.01787688 0.010734939 3.13E-09 8.50496418 0.045107943 FFEHFIEGGR ddPTM_HeLa_CUDC101_4h_R1 2 FFEHFIEGGR 10 0 J3KR44;F5H6Q1;F5GYJ8;Q96FW1;F5GYN4;F5H3F0;Q96FW1-2 J3KR44 OTUB1 Ubiquitin thioesterase OTUB1 0 0 ; ; 125.68 0.0031873 60122000 20032.6 17710.9 14769 16402.7 18939.3 17203 16190.7 15866.6 16519.6 15085.7 FALSE FALSE TRUE 17684.409 18256.55184 15567.45681 17071.673 17542.18557 16874.88144 16815.18072 17672.78961 15838.6551 14995.96959 1.179277465 1.217430572 1.038109388 1.13841742 1.169793355 1.125294456 1.121313339 1.178502631 1.056194133 1 13.87228718 -9.330871569 1.010574531 0.998415595 1.145836315 0.476812012 0.048194587 0.307295134 0.552561134 0.03295239 0.008332216 4.67E-10 9.330871569 0.14742072 FFGNLAVMDSPQQICER ddPTM_HeLa_CUDC101_4h_R1 1 FFGNLAVMDSPQQICER 17 0 Q16401-2;Q16401 Q16401-2 PSMD5 26S proteasome non-ATPase regulatory subunit 5 0 0 99.215 0.017101 7531100 797.46 614.69 487.15 383.01 678.79 634.21 581.51 455.08 574.22 522.23 FALSE FALSE TRUE 703.9829477 633.6278703 513.4868025 398.6308033 628.717014 622.1135009 603.9390355 506.8844677 550.5504086 519.1237527 1.35609851 1.22057191 0.989141413 0.767891666 1.211112015 1.198391516 1.163381626 0.976423184 1.060537888 1 9.01993469 -6.768618587 24.98382579 1.176787224 1.057263684 0.104467558 0.151194141 323.2070094 1124767.65 0.029647235 0.039415085 1.70E-07 6.768618587 -0.11952354 FFGVIPSGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 FFGVIPSGKK 10 1 P35251-2;P35251;D6RAD2;E0CX09 P35251-2 RFC1 Replication factor C subunit 1 0 1 ; FFGVIPSGK(1)K;FFGVIPSGK(1)K 102.61 0.0094328 873650 1153.07 971.66 369.19 1223.23 1054.81 1121.51 1040.21 401.6 362.73 186.18 FALSE TRUE FALSE 1017.908883 1001.595693 389.1495281 1273.118607 976.9987678 1100.119065 1080.331248 447.3165207 347.7781159 185.0725931 5.500051983 5.411907167 2.102685879 6.879022904 5.279002966 5.944257045 5.837337826 2.416978728 1.879144341 1 7.531947456 -9.30170223 0.7637558 0.663220637 5.038609995 0.468943901 1.465132046 0.498168063 0.456988425 1.387385456 0.27791302 4.99E-10 9.30170223 4.375389358 FFHLAFEEEFGR ddPTM_HeLa_CUDC101_4h_R1 1 FFHLAFEEEFGR 12 0 Q13347 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I 0 0 139.31 0.0011749 4261000 3845.8 3532.3 2696.2 3222.8 3346.7 3219.3 2746 2850.2 2954.5 3018.9 FALSE FALSE TRUE 3395.001154 3641.125976 2841.964728 3354.239714 3099.820609 3157.897216 2851.91414 3174.655247 2832.714259 3000.943449 1.131311273 1.213327088 0.947023753 1.117728398 1.032948692 1.052301475 0.950339181 1.057885729 0.943941233 1 11.55120042 -5.188700836 2.136656935 1.069631362 1.005901907 0.029952885 0.083708357 0.62345445 5.45669636 0.011680406 0.037851346 6.48E-06 5.188700836 -0.063729455 FFIDQSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 FFIDQSKK 8 1 I3L0K7;Q12931-2;Q12931 I3L0K7 TRAP1 "Heat shock protein 75 kDa, mitochondrial" 0 1 ; FFIDQSK(1)K;FFIDQSK(1)K 97.635 0.017509 1156430 481.6 74.266 267.006 340.02 467.19 461.94 376.6 354.59 226.207 130.03 FALSE TRUE FALSE 425.1475781 76.55404743 281.441152 353.8874853 432.7263245 453.1292641 391.1255882 394.9550923 216.8826517 129.2565758 3.289175622 0.592264239 2.177383629 2.73786833 3.347808975 3.505657344 3.025962786 3.055589937 1.677923544 1 7.014093868 -6.11421066 2.861291269 1.978344325 3.228388343 0.492367512 0.699153352 0.27978489 4.426618708 0.145572675 0.257539561 7.69E-07 6.11421066 1.250044018 TIS(ph)PSTSNNIPLMR ddPTM_HeLa_CUDC101_4h_R1 1 TISPSTSNNIPLMR 14 0 O94806;O94806-2;F8WBA3;Q15139 O94806 PRKD3;PRKD1 Serine/threonine-protein kinase D3;Serine/threonine-protein kinase;Serine/threonine-protein kinase D1 1 0 T(0.226)IS(0.754)PS(0.009)T(0.009)S(0.003)NNIPLMR 148.18 0.00028785 14013000 644.09 643.45 780.74 727 570.69 674.22 556.6 751.49 685.5 723.07 TRUE FALSE FALSE 568.5907466 663.2739318 822.949166 756.6502024 528.5913357 661.3603768 578.0682484 837.036584 657.2433999 718.7691475 0.791061704 0.922791322 1.144942251 1.052702672 0.735411832 0.920129056 0.804247442 1.164541615 0.91440124 1 9.489384674 -8.50380635 0.002420813 0.761850829 1.08275384 0 0.140344428 3453598.119 3299.628901 220071.1863 217322.6158 3.13E-09 8.50380635 0.320903011 S(ph)SDEENGPPSSPDLDR ddPTM_HeLa_CUDC101_4h_R1 2 SSDEENGPPSSPDLDR 16 0 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 1 0 S(0.911)S(0.089)DEENGPPSSPDLDR;S(0.922)S(0.078)DEENGPPSSPDLDR ; 256.71 9.84E-70 15195400 2369.91 1983.52 1892.21 1627.79 1647.84 2248.38 2073.52 2308.1 2482.5 2379.24 TRUE FALSE FALSE 2092.112742 2044.6299 1994.508596 1694.178312 1526.282126 2205.495898 2153.496361 2570.844774 2380.170299 2365.088175 0.884581287 0.864504724 0.843312574 0.716327759 0.645338361 0.932521638 0.910535338 1.086997433 1.006376982 1 11.20767826 -8.503497355 0.777420323 0.991057089 0.849892576 0.19847044 0.113086819 0.773093819 0.96602353 0.05407877 0.026571467 3.14E-09 8.503497355 -0.141164513 LQEDPNYS(ph)PQRFPNAQR ddPTM_HeLa_CUDC101_4h_R1 3 LQEDPNYSPQRFPNAQR 17 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710;P46379-4;H0Y4L1 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 LQEDPNY(0.031)S(0.969)PQRFPNAQR;LQEDPNY(0.011)S(0.989)PQRFPNAQR;LQEDPNY(0.157)S(0.843)PQRFPNAQR ;; 98.175 0.0021522 163470000 6684.9 5795 5729.3 5961.3 7060.9 5864.5 5814.8 4831.7 6042.2 5589.6 TRUE FALSE FALSE 5901.306156 5973.537081 6039.043288 6204.427581 6540.031474 5752.644433 6039.078784 5381.721198 5793.137959 5556.352811 1.062082693 1.075082394 1.086871819 1.116636721 1.177036754 1.035327422 1.086878208 0.96857082 1.042615211 1 12.43992249 -8.503427386 0.725882768 1.003651004 1.081878625 0.136845257 0.051886874 0.647329332 0.705515488 0.024853068 0.011640633 3.14E-09 8.503427386 0.078227621 TDATDGKDYNASAS(ph)TISPPSSMEEDKFSR ddPTM_HeLa_CUDC101_4h_R1 1 TDATDGKDYNASASTISPPSSMEEDKFSR 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.001)DATDGKDY(0.004)NAS(0.054)AS(0.313)T(0.313)IS(0.313)PPS(0.001)S(0.001)MEEDKFSR 41.294 0.025492 139640000 1948.3 1449.1 1547.7 1600.5 1706.2 1589.4 1421.8 1509.5 1729.6 2053.9 TRUE FALSE FALSE 1719.923227 1493.745053 1631.373344 1665.775308 1580.337025 1559.084843 1476.639302 1681.335378 1658.305156 2041.683311 0.842404509 0.731624266 0.799033491 0.815883295 0.774036314 0.763627167 0.723246007 0.823504492 0.812224475 1 10.99554339 -8.501276442 0.524470493 1.010599763 0.767625062 0.193640539 0.066343478 0.243067103 0.136546375 0.027148755 0.01032679 3.15E-09 8.501276442 -0.242974702 AVEFSTS(ph)S(ph)LSYTVQSTRR ddPTM_HeLa_CUDC101_4h_R1 1 AVEFSTSSLSYTVQSTRR 18 1 V9GYM5;H0Y607;H7BY93;Q96BN6-2;Q96BN6 V9GYM5 FAM149B1 Protein FAM149B1 2 0 AVEFS(0.297)T(0.35)S(0.451)S(0.451)LS(0.451)YTVQSTRR 77.593 0.023075 12551000 974.91 950.29 1151 978.07 881.75 976.63 879.47 853.35 943.18 528.33 TRUE FALSE FALSE 860.6325277 979.5673085 1213.226542 1017.959922 816.7050592 958.0024099 913.3914525 950.4919146 904.3017212 525.1874697 1.638714892 1.865176466 2.310082802 1.93827915 1.555073391 1.824115131 1.73917221 1.809814532 1.721864617 1 9.036688685 -8.501091569 0.734682636 1.037141032 1.856977043 0.19245271 0.281936062 0.25333642 0.282992664 0.102032687 0.048297242 3.15E-09 8.501091569 0.819836011 LLKPGEEPSEYT(ph)DEEDTKDHNKQD ddPTM_HeLa_CUDC101_4h_R1 3 LLKPGEEPSEYTDEEDTKDHNKQD 24 3 U3KPU8;U3KQM0;O15173;O15173-2 U3KPU8 PGRMC2 Membrane-associated progesterone receptor component 2 1 0 LLKPGEEPS(0.039)EY(0.146)T(0.644)DEEDT(0.172)KDHNKQD;LLKPGEEPS(0.028)EY(0.454)T(0.517)DEEDTKDHNKQD;LLKPGEEPS(0.081)EY(0.436)T(0.479)DEEDT(0.004)KDHNKQD ;; 63.225 0.0026632 448563000 14104.1 12322.8 11048.7 11861 10780.9 11260.7 10544.2 10944.8 11161.5 14947.9 TRUE FALSE FALSE 12450.83878 12702.45086 11646.02614 12344.74285 9985.614486 11045.92091 10950.89333 12190.71179 10701.41825 14858.98923 0.837933091 0.854866416 0.783769741 0.830792907 0.672025151 0.743383062 0.736987769 0.82042672 0.720198264 1 13.85904836 -8.500330618 0.315753353 1.053275969 0.734412645 0 0.097102497 0.677073836 0.141133094 0.083015185 0.029222536 3.16E-09 8.500330618 -0.318863324 FGAVWTGDNTAEWDHLK ddPTM_HeLa_CUDC101_4h_R1 2 FGAVWTGDNTAEWDHLK 17 0 Q14697;Q14697-2;F5H6X6;E9PKU7 Q14697 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 165.58 1.40E-05 54142000 5803.4 4715.5 4700.5 4417.6 6219.4 5781.1 5515.8 4679.2 4694.7 5587.4 FALSE FALSE TRUE 5123.134249 4860.778966 4954.623248 4597.768822 5760.607253 5670.835149 5728.546254 5211.861214 4501.182479 5554.165896 0.922394892 0.875159125 0.892055322 0.827805454 1.037168742 1.02100572 1.031396318 0.938369741 0.810415562 1 12.43935455 LNCS(ph)TSPEIFR ddPTM_HeLa_CUDC101_4h_R1 1 LNCSTSPEIFR 11 0 Q9BRS8 Q9BRS8 LARP6 La-related protein 6 1 0 LNCS(0.537)T(0.232)S(0.232)PEIFR 106.79 0.0079163 27141000 2555.3 2560.1 2266.9 2378.5 2758.4 2662.4 2334.3 1899.4 2649.9 1700.3 TRUE FALSE FALSE 2255.771608 2638.973647 2389.455471 2475.505511 2554.918328 2611.619156 2424.334733 2115.620018 2540.67 1690.18654 1.334628785 1.561350528 1.413722932 1.464634496 1.511619142 1.545166225 1.434359271 1.251708003 1.50318911 1 10.72296677 -8.499948955 0.661343467 1.008329164 1.461946024 0 0.174385715 0.231012394 0.208852748 0.050630038 0.022288099 3.16E-09 8.499948955 0.45361686 ASQSRPNS(ph)SALETLGGEK ddPTM_HeLa_CUDC101_4h_R1 1 ASQSRPNSSALETLGGEK 18 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 ASQS(0.006)RPNS(0.692)S(0.283)ALET(0.019)LGGEK 96.562 0.015696 19700000 2097.9 2212.3 1906.7 1808.8 2115.8 2316.7 1883.9 1389.7 1940 1457.5 TRUE FALSE FALSE 1851.987342 2280.458341 2009.781969 1882.570682 1959.721649 2272.512807 1956.562654 1547.897831 1860.032379 1448.830725 1.278263437 1.573999157 1.387175144 1.299372418 1.352622922 1.568515057 1.350442547 1.068377281 1.283816216 1 10.50067333 -8.497677839 0.824872069 1.023756167 1.373190665 0.161471644 0.159088844 0.338535596 0.475974556 0.058961539 0.03030984 3.18E-09 8.497677839 0.349434498 NGDECAYHHPIS(ph)PCK ddPTM_HeLa_CUDC101_4h_R1 1 NGDECAYHHPISPCK 15 0 H0YJA2;Q6PJT7-5;Q6PJT7-2;Q6PJT7;Q6PJT7-9;G3V5I6;G3V256;Q6PJT7-10;Q6PJT7-4;Q6PJT7-3;Q6PJT7-11;G3V411;H0YJ51;Q6PJT7-8;Q6PJT7-6 H0YJA2 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 NGDECAYHHPIS(1)PCK 92.671 0.0075979 62611000 4964.4 4058.6 4555.7 4792.4 4989.5 4486.5 3831.9 3872.8 4367.7 4072.3 TRUE FALSE FALSE 4382.480558 4183.640655 4801.994922 4987.854787 4621.434525 4400.927488 3979.697667 4313.663898 4187.661557 4048.077778 1.082607795 1.03348821 1.186240775 1.232153891 1.141636791 1.087164755 0.983108004 1.065607959 1.034481496 1 11.98302129 -8.495404317 0.728175682 1.005552836 1.106253825 0.199362185 0.068326257 0.745940584 0.819592342 0.036786397 0.017392968 3.20E-09 8.495404317 0.100700989 FGFAIGSQTTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 FGFAIGSQTTKK 12 1 Q8WW12;Q8WW12-2 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 0 1 ; FGFAIGSQTTK(1)K;FGFAIGSQTTK(1)K 160.18 1.70E-05 1437600 1111.14 1181.05 989.04 1050.31 1377.02 861.57 998.72 915.53 613.13 875.18 FALSE TRUE FALSE 980.8938536 1217.436751 1042.510494 1093.146182 1275.439978 845.1369877 1037.240965 1019.750235 587.8565219 869.9743904 1.127497389 1.39939378 1.198323198 1.256526851 1.466066119 0.971450421 1.19226609 1.17216121 0.675717042 1 9.764829123 -7.884072422 1.476622718 1.03525345 1.231572919 0.355917685 0.171700418 0.312326899 1.416369369 0.028756945 0.026130307 1.31E-08 7.884072422 0.196319469 FGFAIGSQTTKK ddPTM_HeLa_CUDC101_4h_R1 1 FGFAIGSQTTKK 12 1 Q8WW12;Q8WW12-2 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 0 0 71.268 0.032527 470700 0 110.38 59.639 50.64 55.475 0 172.14 150.76 0 0 FALSE FALSE TRUE 0 113.780677 62.86326474 52.70531808 51.38271977 0 178.7794975 167.921909 0 0 0 ELSNS(ph)PLRENSFGSPLEFR ddPTM_HeLa_CUDC101_4h_R1 1 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ELS(0.033)NS(0.771)PLRENS(0.172)FGS(0.024)PLEFR 69.289 0.0080477 85871000 1541.5 1629.8 1500.8 1408 1428.4 1587.8 1083.7 1440.9 1381.7 1062.5 TRUE FALSE FALSE 1360.807707 1680.012206 1581.937788 1465.424326 1323.029778 1557.51536 1125.498672 1604.926232 1324.745741 1056.180203 1.288423797 1.590649211 1.497791554 1.387475662 1.252655346 1.474668202 1.06563129 1.5195572 1.254280035 1 10.04464029 -8.495158828 0.892879264 1.030170188 1.381860583 0.250627038 0.161578896 0.320608589 0.526486483 0.056748558 0.03076534 3.20E-09 8.495158828 0.351690395 FGHEFLEFEFRPDGK ddPTM_HeLa_CUDC101_4h_R1 2 FGHEFLEFEFRPDGK 15 1 F5H6N1;P61326;Q96A72;P61326-2 F5H6N1 MAGOHB;MAGOH Protein mago nashi homolog;Protein mago nashi homolog 2 0 0 ; ; 176.89 1.70E-16 38677000 9629.6 8598.4 8700.8 7791 9581 9125.1 8279.6 7385.9 9993.3 10861.8 FALSE FALSE TRUE 8500.832886 8863.306512 9171.191566 8108.750656 8874.228718 8951.053921 8598.946945 8226.681001 9581.371944 10797.19353 0.787318747 0.820889844 0.849405129 0.751005401 0.821901422 0.829016716 0.796405744 0.761927716 0.887394666 1 13.39836875 -9.314593554 0.662358859 1.026721108 0.800307832 0.568054934 0.044836893 0.267552993 0.171562739 0.035807271 0.006209706 4.85E-10 9.314593554 -0.226413276 GPPQS(ph)PVFEGVYNNSR ddPTM_HeLa_CUDC101_4h_R1 4 GPPQSPVFEGVYNNSR 16 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BSK9;Q8WWM7-7;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 1 0 GPPQS(0.991)PVFEGVY(0.008)NNSR;GPPQS(0.999)PVFEGVY(0.001)NNSR;GPPQS(1)PVFEGVYNNSR;GPPQS(0.92)PVFEGVY(0.078)NNS(0.001)R ;;; 116.87 0.00076808 601232000 8895.71 7442.87 7336.35 6925.8 7472.8 7915.85 7215.89 6901.62 8510.86 8885.44 TRUE FALSE FALSE 7852.968359 7672.176003 7732.975272 7208.26406 6921.546432 7764.86835 7494.209294 7687.272523 8160.038748 8832.589008 0.889090204 0.86862142 0.875504936 0.816098661 0.783637326 0.879115777 0.848472547 0.870330604 0.923855819 1 13.10862067 -8.494758303 0.486612373 1.009272599 0.839664606 0.595393157 0.035306037 0.332716094 0.160733656 0.025376256 0.009377797 3.20E-09 8.494758303 -0.169607993 ANTPDS(ph)DIT(ph)EKTEDSSVPETPDNER ddPTM_HeLa_CUDC101_4h_R1 1 ANTPDSDITEKTEDSSVPETPDNER 25 1 D6RAY8;Q9H4L7;Q9H4L7-2 D6RAY8 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 ANT(0.461)PDS(0.931)DIT(0.504)EKT(0.085)EDS(0.01)S(0.008)VPET(0.001)PDNER 71.905 0.00068108 17591000 1967.5 1614.4 1251.3 1116.8 1240.7 1270.4 1154.4 484.93 1605.2 1886.9 TRUE FALSE FALSE 1736.872633 1664.13775 1318.949063 1162.347931 1149.176033 1246.169237 1198.925595 540.132471 1539.032977 1875.676635 0.925997904 0.887219961 0.70318574 0.619695266 0.612672788 0.664383835 0.639196316 0.287966732 0.820521484 1 10.87319541 -4.606717275 0.250796901 1.040971295 1.24E-12 0.726204733 0.101582404 2.354819018 0.137399062 0.06416097 0.753015395 2.47E-05 4.606717275 -1.040971295 down FGNPGEK(ac)LVK ddPTM_HeLa_CUDC101_4h_R1 2 FGNPGEKLVK 10 1 P17844-2;P17844;J3KTA4;J3QR02;J3KRX8;J3QRQ7;J3KTQ4;X6RLV5;J3QKN9 P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 0 1 ; FGNPGEK(1)LVK;FGNPGEK(1)LVK 172.88 0.00042442 51344000 8305.9 8674.3 8895.2 8244.2 8717.6 7653 8389.4 9750.6 7124.3 7094 FALSE TRUE FALSE 7332.294993 8941.544901 9376.101419 8580.43411 8074.520016 7507.031776 8712.981968 10860.56889 6830.633339 7051.804573 1.039775694 1.267979679 1.329603128 1.216771398 1.145028898 1.064554711 1.235567702 1.540112007 0.968636222 1 12.78377678 -1 0.122076809 0.891426645 2.39540123 0.483982061 0.119237237 61.60723905 0.515235718 0.547183769 15.85854418 0.1 1 1.503974585 GRS(ph)TDEY(ph)S(ph)EADEEEEEEEGKPSR ddPTM_HeLa_CUDC101_4h_R1 1 GRSTDEYSEADEEEEEEEGKPSR 23 2 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 3 0 GRS(0.931)T(0.072)DEY(0.998)S(0.999)EADEEEEEEEGKPSR 84.03 0.00026411 32264000 2369.5 1898.8 1681.5 1846 2349.1 2085.7 2015.1 1936.1 2105.3 2335.3 TRUE FALSE FALSE 2091.750802 1957.299777 1772.406976 1921.287859 2175.811573 2045.918748 2092.823082 2156.497798 2018.518643 2321.409532 0.901069274 0.843151435 0.763504652 0.827638481 0.937280365 0.881326073 0.901531183 0.928960517 0.869522855 1 11.18078534 -8.494302712 0.89643497 0.989356299 0.870493956 0.009381676 0.061737759 0.35188265 0.582394122 0.021055422 0.011450715 3.20E-09 8.494302712 -0.118862343 AQSGS(ph)DSSPEPK ddPTM_HeLa_CUDC101_4h_R1 1 AQSGSDSSPEPK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQS(0.104)GS(0.896)DSSPEPK 119.88 0.00023309 0 1550.6 960.84 1177.9 1535.4 1253.6 923.55 991.15 411.01 1581.7 1974.9 TRUE FALSE FALSE 1368.841019 990.4423415 1241.580837 1598.020249 1161.124426 905.9348225 1029.378988 457.797717 1516.501657 1963.153207 0.697266527 0.50451607 0.632442151 0.814006896 0.591458894 0.461469242 0.524349798 0.233195104 0.772482581 1 10.93895705 -8.489707496 0.099797322 1.606040016 4.16E-15 0.58036871 0.131066154 7.804440175 0.330669036 3.225293404 1.980513323 3.24E-09 8.489707496 -1.606040016 FGSNINLEADES ddPTM_HeLa_CUDC101_4h_R1 1 FGSNINLEADES 12 0 Q9NQP4 Q9NQP4 PFDN4 Prefoldin subunit 4 0 0 120.31 0.018423 16021000 5342.7 4771.4 4700.6 4855.7 5813.9 4679 4286.9 4697.9 4694.7 4342.2 FALSE FALSE TRUE 4716.436805 4918.401178 4954.728655 5053.736434 5385.02018 4589.755871 4452.247169 5232.689946 4501.182479 4316.372401 1.092685331 1.139475634 1.147891839 1.170829568 1.247580069 1.063336395 1.031478926 1.212288806 1.042816064 1 12.07560363 -8.218982258 0.715004652 1.008743717 1.143145641 0.380937075 0.061157902 0.432713224 0.481764322 0.025848373 0.015298608 6.04E-09 8.218982258 0.134401924 EVHDELEDLPSPPPPLS(ph)PPPTTSPHK ddPTM_HeLa_CUDC101_4h_R1 2 EVHDELEDLPSPPPPLSPPPTTSPHK 26 0 H0YJ30;G3V582;F5H039;Q9NQX3;Q9NQX3-2 H0YJ30 GPHN Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase 1 0 EVHDELEDLPSPPPPLS(0.918)PPPT(0.034)T(0.034)S(0.013)PHK;EVHDELEDLPSPPPPLS(0.963)PPPT(0.015)T(0.015)S(0.006)PHK ; 77.584 0.00011364 20174000 2038.41 1292.41 1370.55 1126.67 2280.16 2084.58 1947.99 1458.25 2130.54 2149.51 TRUE FALSE FALSE 1799.47067 1332.22762 1444.646079 1172.620472 2111.95714 2044.82011 2023.124627 1624.251286 2042.718239 2136.724619 0.842163119 0.623490556 0.676103072 0.548793449 0.98840867 0.956988136 0.946834519 0.760159391 0.956004448 1 11.06118527 -8.48855834 1.074305781 0.977539803 0.795754948 0.215641999 0.140054308 0.537618918 1.264043147 0.050543467 0.03052513 3.25E-09 8.48855834 -0.181784855 TASIS(ph)SSPSEGTPTVGSYGCTPQSLPK ddPTM_HeLa_CUDC101_4h_R1 1 TASISSSPSEGTPTVGSYGCTPQSLPK 27 0 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 T(0.407)AS(0.015)IS(0.551)S(0.026)S(0.001)PSEGTPTVGSYGCTPQSLPK 176.11 3.55E-14 11141000 2857.4 3389.3 2582.1 2278.1 3159.7 2970 2532.2 1974.5 2785.6 1879.4 TRUE FALSE FALSE 2522.459904 3493.720316 2721.696136 2371.010765 2926.615226 2913.352198 2629.867802 2199.269099 2670.776389 1868.221245 1.350193351 1.870078463 1.456838232 1.269127396 1.566524968 1.559425687 1.407685417 1.177199491 1.429582495 1 10.8674496 -8.488121939 0.933698083 1.039909438 1.466033532 0.062150317 0.218010644 0.320956902 0.575351747 0.069093256 0.038695303 3.25E-09 8.488121939 0.426124095 FGTK(ac)LGSDIK ddPTM_HeLa_CUDC101_4h_R1 2 FGTKLGSDIK 10 1 K7EME0;A0A0B4J2A4;P42765;K7EJ68 K7EME0 ACAA2 "3-ketoacyl-CoA thiolase, mitochondrial" 0 1 ; FGTK(1)LGSDIK;FGTK(1)LGSDIK 103.91 0.0086733 4220400 3035.6 2313.9 1416.6 2165.61 1997.15 1904.71 1796.78 1539.41 1462.6 1590.49 FALSE TRUE FALSE 2679.77157 2385.188516 1493.185681 2253.932936 1849.824223 1868.38083 1866.082406 1714.650212 1402.311009 1581.029695 1.694953345 1.508629803 0.944438733 1.425610755 1.170012321 1.18174936 1.180295609 1.084514869 0.886960576 1 10.62664875 -6.777806799 24.99908349 1.350876213 1.178069612 0.004098892 0.246232248 503.1773354 768535.4621 0.045900393 0.06042274 1.67E-07 6.777806799 -0.172806601 FGVEQDVDMVFASFIR ddPTM_HeLa_CUDC101_4h_R1 2 FGVEQDVDMVFASFIR 16 0 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 140.14 0.0016175 174443000 1206.3 1142.78 1040.08 906.92 1485.72 1350.64 966.78 1062.35 1299.91 1871.52 FALSE FALSE TRUE 1064.899343 1177.987697 1096.309871 943.9081176 1376.121396 1324.878792 1004.069028 1183.28363 1246.32716 1860.388116 0.572407087 0.633194594 0.589290945 0.507371612 0.739695864 0.712151825 0.53970944 0.636041275 0.669928575 1 10.86138791 -9.248017747 0.813552349 1.019317084 0.61388514 0.168935591 0.121112668 0.232821223 0.256281983 0.06092542 0.013966408 5.65E-10 9.248017747 -0.405431943 FGVVVVGVGR ddPTM_HeLa_CUDC101_4h_R1 1 FGVVVVGVGR 10 0 C9J1E1;P53004 C9J1E1 BLVRA Biliverdin reductase A 0 0 148.33 0.0043182 1330700 1809.8 1157.5 1292 1307.3 1395.8 1187.2 1315.4 890.68 1212.2 1302 FALSE FALSE TRUE 1597.657987 1193.161203 1361.849428 1360.617345 1292.834615 1164.556138 1366.135419 992.0714109 1162.232603 1294.255646 1.234422266 0.921889896 1.05222599 1.051274027 0.998902047 0.899788339 1.055537538 0.766518898 0.897993071 1 10.3379069 -2.827261708 0.422865107 1.09702501 7.37E-14 0.126782534 0.111738822 12.34606263 0.594734565 0.02652278 8.934428007 0.001488464 2.827261708 -1.09702501 FGYVDFESAEDLEK ddPTM_HeLa_CUDC101_4h_R1 2 FGYVDFESAEDLEK 14 0 P19338 P19338 NCL Nucleolin 0 0 ; ; 311.88 2.84E-143 177625000 8887.9 7777.8 7414.9 7567.8 9031.7 7854.3 7655.4 7514.5 8914.1 8360.4 FALSE FALSE TRUE 7846.073835 8017.424799 7815.771923 7876.447595 8365.449485 7704.492314 7950.671342 8369.920305 8546.657025 8310.671969 0.944096201 0.964714385 0.940450057 0.947750991 1.006591226 0.927060091 0.956682128 1.007129187 1.028395424 1 13.02074942 -9.447600465 1.166025706 1.000121569 0.959299615 0.344091791 0.026938251 0.512622041 1.240714321 0.016905598 0.00415533 3.57E-10 9.447600465 -0.040821954 APPPPIS(ph)PTQLSDVSSPR ddPTM_HeLa_CUDC101_4h_R1 1 APPPPISPTQLSDVSSPR 18 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2 Q9P0K7-3 RAI14 Ankycorbin 1 0 APPPPIS(0.916)PT(0.081)QLS(0.003)DVSSPR 116.04 9.99E-05 0 127.86 0 0 0 145.23 150.69 189.87 141.68 121.56 184.05 TRUE FALSE FALSE 112.8724446 0 0 0 134.5166722 147.8158393 197.1933495 157.8082785 116.5492453 182.9552624 0.616940137 0 0 0 0.735243526 0.807934341 1.07782278 0.862551186 0.637036857 1 7.515347103 -8.485724662 1.157118716 0.940565833 0.507971908 0.0724126 0.384467437 0.586048999 1.591056688 0.13296362 0.083244275 3.27E-09 8.485724662 -0.432593924 FHDFDHR ddPTM_HeLa_CUDC101_4h_R1 2 FHDFDHR 7 0 Q15424-2;Q15424;Q15424-4;Q15424-3;K7EII0;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 0 ; ; 126.28 0.010375 94287000 3718.1 2917.9 3427.7 3660.8 3493.6 3193.6 3075.6 2690.1 3325.5 3568.6 FALSE FALSE TRUE 3282.269954 3007.79704 3613.01183 3810.103247 3235.884088 3132.687401 3194.226922 2996.33011 3188.421482 3547.373808 0.925267573 0.84789402 1.018503272 1.074063082 0.912191459 0.883100448 0.900448358 0.844661508 0.898811813 1 11.79253565 -5.532931196 24.99524212 0.966576986 0.881697581 0.277828582 0.061217776 200.7997193 499284.2036 0.009074573 0.018164998 2.93E-06 5.532931196 -0.084879406 FHDFLGDSWGILFSHPR ddPTM_HeLa_CUDC101_4h_R1 1 FHDFLGDSWGILFSHPR 17 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 118.5 0.00024092 8780500 2476.3 2019.3 1671.4 1996.8 3405.2 2568.4 2426.9 1786.5 1667.9 2792.4 FALSE FALSE TRUE 2186.031868 2081.51224 1761.76094 2078.238135 3154.00518 2519.412049 2520.506346 1989.867939 1599.148456 2775.790681 0.787534839 0.749880837 0.634687965 0.748701316 1.13625469 0.907637621 0.90803185 0.716865271 0.576105564 1 11.43868306 -9.299051187 1.082239054 0.997703754 0.82678167 0 0.185241102 0.70526427 1.508457792 0.088446896 0.024972381 5.02E-10 9.299051187 -0.170922083 FHDIDDVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 FHDIDDVKK 9 1 Q9H2U2-3;Q9H2U2;H0Y9D8;Q9H2U2-6;Q9H2U2-2;D6R967 Q9H2U2-3 PPA2 "Inorganic pyrophosphatase 2, mitochondrial" 0 1 FHDIDDVK(1)K 87.258 0.026506 1010900 1369.4 707.73 661.82 761.92 1103 1249 993.74 875.79 960.08 876.81 FALSE TRUE FALSE 1208.881008 729.5343224 697.5999911 792.9943909 1021.633887 1225.177406 1032.068885 975.4863935 920.505096 871.5946951 1.386976096 0.837010971 0.800372002 0.909820121 1.172143306 1.405673317 1.184115611 1.119197259 1.056115992 1 9.767513605 -5.522105811 24.99913074 1.106530511 1.24074091 0.129577574 0.185146125 66.37898707 2146873.957 0.034282898 0.069235659 3.01E-06 5.522105811 0.134210399 NLSLSSSTPPLPS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 1 NLSLSSSTPPLPSPGR 16 0 O43516-2;O43516;O43516-3;E9PB87 O43516-2 WIPF1 WAS/WASL-interacting protein family member 1 1 0 NLSLSSST(0.001)PPLPS(0.999)PGR 145.48 0.00025029 8272900 775.52 523.15 533.93 622.35 546.47 757.21 695.16 450.49 661.14 893.55 TRUE FALSE FALSE 684.6147212 539.2676314 562.7958708 647.732123 506.1579968 742.7674808 721.9725541 501.7719607 633.8875294 888.2351249 0.770758442 0.607122615 0.633611366 0.729234979 0.56984686 0.836228449 0.812816938 0.564908938 0.713648348 1 9.794797813 -8.485609609 0.745094517 0.985744799 0.687593419 0.094250089 0.124045263 0.300855292 0.34675987 0.043925236 0.021286829 3.27E-09 8.485609609 -0.29815138 FHGVLPDDEDALR ddPTM_HeLa_CUDC101_4h_R1 1 FHGVLPDDEDALR 13 0 F6QMI7;E9PHM6;Q03001-8;Q03001-14;A0A494C073;A0A0U1RQJ2;F8W9J4;Q03001 F6QMI7;F8W9J4 DST Dystonin 0 0 94.538 0.012303 3225200 1429.8 1598.8 1190.9 1223 1563.5 1460.1 1462.8 1125.5 1625.1 1442.9 FALSE FALSE TRUE 1262.201011 1648.057133 1255.283656 1272.879226 1448.16372 1432.251025 1519.220686 1253.622371 1558.11269 1434.317567 0.880001083 1.149018301 0.875178333 0.887445888 1.009653478 0.998559216 1.059194087 0.874020091 1.086309424 1 10.48614877 FHLGLFTDR ddPTM_HeLa_CUDC101_4h_R1 2 FHLGLFTDR 9 0 Q8TEQ6 Q8TEQ6 GEMIN5 Gem-associated protein 5 0 0 ; ; 81.594 0.027958 1531440 1845.63 1079.45 883.31 1419.39 1213.37 1195.88 1229.25 1007.18 966.28 527.88 FALSE FALSE TRUE 1629.288049 1112.706575 931.0644105 1477.278859 1123.862112 1173.070581 1276.662584 1121.8333 926.4495294 524.7401463 3.104942629 2.120490652 1.774334243 2.815257933 2.141749817 2.23552665 2.432942464 2.137883499 1.765539641 1 9.03545936 -9.525962223 1.276442934 0.998255242 2.41885334 0.405810293 0.42600814 0.234925164 0.684000985 0.289599899 0.069007569 2.98E-10 9.525962223 1.420598098 FHPEPYGLEDDQR ddPTM_HeLa_CUDC101_4h_R1 1 FHPEPYGLEDDQR 13 0 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-19;O60716-4;O60716-6;O60716-11;O60716-13;O60716-21;O60716-24;O60716-9;O60716-17;O60716-16;O60716-10;O60716-23;O60716-15;O60716-18;O60716-12;O60716-22;O60716-20;O60716-14 O60716-5 CTNND1 Catenin delta-1 0 0 100.02 0.0089139 8367200 3543.7 3210.6 2935.4 3106.2 3674.4 3065.5 2798.6 2638.7 3358.3 3351.1 FALSE FALSE TRUE 3128.312858 3309.514781 3094.096603 3232.884262 3403.346832 3007.030695 2906.542939 2939.078942 3219.869453 3331.167508 0.939104038 0.993499958 0.928832488 0.970495856 1.021667876 0.902695733 0.872529806 0.882296953 0.966588875 1 11.70181219 -5.079933201 5.901220331 0.971845928 0.879580939 0.712459827 0.026029941 0.100860808 5.812484182 0.004228284 0.011089522 8.32E-06 5.079933201 -0.092264989 MADS(ph)S(ph)PALS(ph)LREGGPRAPRPS(ph)APSPPPR ddPTM_HeLa_CUDC101_4h_R1 1 MADSSPALSLREGGPRAPRPSAPSPPPR 28 3 Q8IV50 Q8IV50 LYSMD2 LysM and putative peptidoglycan-binding domain-containing protein 2 4 0 MADS(0.957)S(0.997)PALS(0.988)LREGGPRAPRPS(0.852)APS(0.207)PPPR 46.403 0.0021401 0 1871.3 1598.9 1529.8 1774.4 1390.8 1559.6 1426.3 1391.6 1662.1 1858.7 TRUE FALSE FALSE 1651.949051 1648.160214 1612.505615 1846.767702 1288.203455 1529.853228 1481.312869 1550.014119 1593.587534 1847.64437 0.894083882 0.892033251 0.872735924 0.999525521 0.697213964 0.828001997 0.801730513 0.83891367 0.862496896 1 10.85147138 -8.484817223 0.093990825 1.226835333 0.638969033 0.148472058 0.078319454 13.862481 0.551156644 2.072173915 1.308171016 3.27E-09 8.484817223 -0.5878663 FHQLDIDDLQSIR ddPTM_HeLa_CUDC101_4h_R1 2 FHQLDIDDLQSIR 13 0 O75828;E9PQ63;A8MTM1;P16152-2;P16152 O75828;P16152 CBR3;CBR1 Carbonyl reductase [NADPH] 3;Carbonyl reductase [NADPH] 1 0 0 ; ; 142.76 0.00076812 81612000 4297.77 4515.88 4496.72 4827.95 4659.3 3866.32 4672.08 4247.84 4434.84 4697.12 FALSE FALSE TRUE 3793.991916 4655.00891 4739.826285 5024.854669 4315.592722 3792.576388 4852.283691 4731.396935 4252.034018 4669.181321 0.812560416 0.99696469 1.015130054 1.07617467 0.924271821 0.812257252 1.039215091 1.013324737 0.910659434 1 12.1889539 VDSLVSLSEEDLES(ph)DQR ddPTM_HeLa_CUDC101_4h_R1 1 VDSLVSLSEEDLESDQR 17 0 Q12802-4;Q12802;Q12802-2;A0A087WTD7;A8MYJ1;A0A087WY36;H0YMW2;H0YLH1 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 VDSLVS(0.006)LS(0.036)EEDLES(0.958)DQR 238.64 2.39E-70 0 936.76 899.01 643.45 789.42 846.12 906.26 835.22 688.68 697.21 870.12 TRUE FALSE FALSE 826.9544128 926.7074325 678.2368533 821.6159598 783.7034133 888.9746004 867.4347152 767.0765475 668.4707087 864.9444875 0.95607802 1.071406831 0.784139171 0.949906002 0.906073655 1.02778226 1.002879061 0.886850611 0.772848106 1 9.756463733 -8.484807087 0.590201715 0.998728879 0.946012942 0 0.103048013 1.900804427 1.369025751 0.047200155 0.01954956 3.27E-09 8.484807087 -0.052715937 PSMSPT(ph)PLDR ddPTM_HeLa_CUDC101_4h_R1 2 PSMSPTPLDR 10 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 PS(0.002)MS(0.308)PT(0.69)PLDR;PSMS(0.275)PT(0.725)PLDR ; 160.18 0.00031342 123818000 7503.4 6608 5788 6491.7 4905.7 4963 5191.5 5628.9 6463.4 8757.2 TRUE FALSE FALSE 6623.862826 6811.584648 6100.916788 6756.459586 4543.816285 4868.339044 5391.737894 6269.671223 6196.975916 8705.111785 0.760916458 0.782481008 0.700843015 0.776148515 0.521971044 0.559250606 0.619376066 0.720228686 0.71187781 1 13.08764711 -8.484376991 0.268751593 1.107832058 0.579903175 0.223342725 0.112350336 0.9764404 0.155827649 0.186048886 0.069856173 3.28E-09 8.484376991 -0.527928883 FHSEDYIDFLQR ddPTM_HeLa_CUDC101_4h_R1 1 FHSEDYIDFLQR 12 0 O15379;O15379-2 O15379 HDAC3 Histone deacetylase 3 0 0 96.067 0.00086074 0 2065.9 2155.6 1704.2 1953.8 2209.5 2061.4 1953.1 1578.9 2060 2062.2 FALSE FALSE TRUE 1823.738334 2222.011481 1796.334207 2033.484409 2046.509587 2022.08223 2028.431721 1758.635594 1975.085928 2049.933943 0.889657123 1.083942967 0.876288825 0.991975579 0.998329529 0.986413361 0.989510773 0.857898666 0.963487597 1 11.00136171 -5.400561957 0.002031838 1.90566759 2.13E-08 0.006540647 0.065567393 717821.7379 353.8643817 164415.2807 167482.2632 3.98E-06 5.400561957 -1.905667569 STPFIVPSS(ph)PTEQEGR ddPTM_HeLa_CUDC101_4h_R1 2 STPFIVPSSPTEQEGR 16 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 STPFIVPS(0.226)S(0.774)PTEQEGR;STPFIVPS(0.351)S(0.614)PT(0.035)EQEGR ; 260.07 6.99E-70 1524150000 7714.3 6597.9 5923.3 6217.6 6440.8 6390.2 6313.5 6631.3 7352.8 7771.2 TRUE FALSE FALSE 6810.041448 6801.173479 6243.531515 6471.180603 5965.675016 6268.317582 6557.01381 7386.180387 7049.714472 7724.976557 0.881561439 0.880413478 0.808226597 0.837695824 0.772258009 0.811435159 0.848806953 0.956142758 0.912587167 1 12.91531484 -8.482862987 0.583639785 1.000609717 0.836613805 0.372983013 0.052917471 0.406584517 0.286405998 0.031321081 0.01290729 3.29E-09 8.482862987 -0.163995912 AAHVPENS(ph)DTEQDVLTVKPVRK ddPTM_HeLa_CUDC101_4h_R1 2 AAHVPENSDTEQDVLTVKPVRK 22 2 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 0 AAHVPENS(0.956)DT(0.044)EQDVLTVKPVRK;AAHVPENS(0.591)DT(0.408)EQDVLT(0.001)VKPVRK ; 66.152 0.0026956 63607000 5681.6 5441.4 5360.1 5657.4 5806.2 4718.7 4662.1 4714.3 5416.1 4185.8 TRUE FALSE FALSE 5015.611461 5609.043084 5649.883219 5888.133225 5377.888194 4628.698659 4841.918759 5250.956856 5192.846066 4160.902675 1.20541427 1.348035155 1.357850366 1.415109577 1.29248113 1.112426562 1.163670275 1.261975409 1.2480095 1 12.02268083 -8.482324588 0.855134603 1.020280676 1.272727456 0.099796532 0.112430643 0.321740376 0.486537973 0.040450638 0.021556804 3.29E-09 8.482324588 0.25244678 FHVEEEGK ddPTM_HeLa_CUDC101_4h_R1 4 FHVEEEGK 8 0 P00558;P00558-2;P07205 P00558 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 0 ;;; ;;; 151.04 0.0024083 216879200 34067.8 29016.5 30662.5 30524.7 28243.8 26129.4 25296.7 22966.3 29512.6 30435.5 FALSE FALSE TRUE 30074.42413 29910.46397 32320.2075 31769.62921 26160.31114 25631.02523 26272.40219 25580.69076 28296.07814 30254.46829 0.994049006 0.988629636 1.068278814 1.050080567 0.864675951 0.84718148 0.868380893 0.845517776 0.935269391 1 14.88486061 -5.74838881 24.49141642 1.00564078 0.856630688 0.82088334 0.034236964 46.27822904 86847.52513 0.004150189 0.008257961 1.78E-06 5.74838881 -0.149010092 FHVEEEGK(ac)GK ddPTM_HeLa_CUDC101_4h_R1 2 FHVEEEGKGK 10 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 1 ; FHVEEEGK(1)GK;FHVEEEGK(1)GK 131.52 0.001829 6056900 9458.3 7872 7657.9 7707.6 10531.5 8963.9 9399.4 9023.1 9786.2 9494 FALSE TRUE FALSE 8349.612412 8114.526989 8071.909238 8021.949243 9754.612227 8792.928542 9761.938007 10050.25323 9382.808694 9437.529266 0.884724399 0.859814763 0.855298989 0.850005231 1.03359809 0.931698148 1.03437433 1.064924192 0.994201812 1 13.2041935 -4.643906105 1.203959807 0.927168825 1.08996983 0.394172768 0.06200372 0.804011835 1.488246422 0.010674512 0.137022578 2.27E-05 4.643906105 0.162801006 SRKDDDSLSEASHSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 SRKDDDSLSEASHSKK 16 3 Q8NDX6 Q8NDX6 ZNF740 Zinc finger protein 740 0 1 SRKDDDSLSEASHSK(1)K 56.46 0.021506 1323200 742.2 659.18 958.28 1113.6 1754.6 1821.3 1993.9 2338.5 321.35 412.08 FALSE TRUE FALSE 655.2004411 679.4885545 1010.087515 1159.017421 1625.166654 1786.561737 2070.805391 2604.705387 308.103817 409.6289298 1.59949748 1.658790444 2.465859811 2.829432535 3.967411809 4.361414946 5.055320169 6.358694901 0.75215346 1 8.678173798 -4.605805439 0.372258008 1.039477607 9.241478387 0.984995347 0.217134115 0.331782076 0.037946377 0.062497104 1.165264642 2.48E-05 4.605805439 8.20200078 up ISFPGSS(ph)ESPLSSK ddPTM_HeLa_CUDC101_4h_R1 1 ISFPGSSESPLSSK 14 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 ISFPGS(0.039)S(0.621)ES(0.281)PLS(0.041)S(0.018)K 127.07 0.0010354 30335000 2443.1 1912.4 2006.8 1798.3 1610.7 2231.8 2294.2 2113.2 2748.2 2493.9 TRUE FALSE FALSE 2156.723521 1971.318777 2115.293678 1871.642447 1491.88187 2189.232133 2382.688063 2353.758146 2634.918033 2479.066172 0.869974164 0.795186026 0.85326229 0.754978817 0.601791871 0.883087413 0.96112322 0.949453537 1.062867165 1 11.27558107 -8.480068667 0.77318133 0.990056002 0.826116087 0.365764665 0.100681781 0.590950562 0.733686212 0.047584546 0.02376688 3.31E-09 8.480068667 -0.163939915 FTSGAFLS(ph)PSVSVQECR ddPTM_HeLa_CUDC101_4h_R1 4 FTSGAFLSPSVSVQECR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 FTSGAFLS(0.979)PS(0.02)VS(0.001)VQECR;FT(0.002)S(0.048)GAFLS(0.854)PS(0.048)VS(0.048)VQECR;FTSGAFLS(0.782)PS(0.172)VS(0.046)VQECR;FTSGAFLS(0.899)PS(0.072)VS(0.029)VQECR ;;; 145.79 0.00015943 60120100 4521.28 4198.24 4023.81 4375.09 4834.06 4344.04 4060.41 2874.55 4739.44 3379.23 TRUE FALSE FALSE 3991.302412 4327.582798 4241.34934 4553.525081 4477.461025 4261.184675 4217.021374 3201.777153 4544.078277 3359.13019 1.188195213 1.288304577 1.262633212 1.355566716 1.332922742 1.268538114 1.255390871 0.953156613 1.35275444 1 11.713872 -8.479279759 0.759510193 1.013429213 1.25311793 0 0.149256893 0.414623303 0.497014913 0.048685482 0.024039054 3.32E-09 8.479279759 0.239688717 FIIHAPPGEFNEVFNDVR ddPTM_HeLa_CUDC101_4h_R1 2 FIIHAPPGEFNEVFNDVR 18 0 P47755;C9JUG7;F8W9N7;P47755-2;A0A0D9SET8 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 0 0 ; ; 110.6 0.00043053 31573000 5155.6 5428 4184.3 4575.7 5290.6 5111.9 4488.2 4314.1 4700.5 5467.1 FALSE FALSE TRUE 4551.268383 5595.230246 4410.515915 4762.316824 4900.322978 5014.399025 4661.311377 4805.199706 4506.7434 5434.581446 0.83746438 1.029560473 0.811564968 0.876298731 0.901692803 0.922683573 0.857713041 0.884189473 0.82927148 1 12.40795321 -9.503616638 1.164166645 1.002067117 0.886061554 0 0.07648327 0.425528615 1.001698651 0.040989149 0.009211562 3.14E-10 9.503616638 -0.116005563 FILPVNEGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 FILPVNEGKK 10 1 Q9Y3A5;A0A087X020 Q9Y3A5 SBDS Ribosome maturation protein SBDS 0 1 ; FILPVNEGK(1)K;FILPVNEGK(1)K 120.99 0.0029231 1216500 2118.8 1117.59 957.3 917.83 1853.11 1528.51 1650.14 1161.35 2038.89 1927.51 FALSE TRUE FALSE 1870.437476 1152.021623 1009.054534 955.2630746 1716.409767 1499.356218 1713.786453 1293.55339 1954.846091 1916.045085 0.976197006 0.601249747 0.526634024 0.498559811 0.895808653 0.782526586 0.894439523 0.675116363 1.020250571 1 10.90391579 -7.27750878 22.21708377 0.988759762 0.700806662 0.536993864 0.128563185 115.8507766 160171.3703 0.023543569 0.026988977 5.28E-08 7.27750878 -0.2879531 DRAS(ph)PAAAEEVVPEWAS(ph)CLKSPR ddPTM_HeLa_CUDC101_4h_R1 1 DRASPAAAEEVVPEWASCLKSPR 23 2 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 2 0 DRAS(1)PAAAEEVVPEWAS(0.712)CLKS(0.288)PR 72.231 0.00086482 5003800 2474.6 2404.4 2225 2192.3 2451.6 2579.3 1798.1 1943.4 2396.5 1939 TRUE FALSE FALSE 2184.531139 2478.476714 2345.29023 2281.71147 2270.750352 2530.10415 1867.453319 2164.628801 2297.715256 1927.466742 1.133369044 1.285872623 1.216773384 1.183787725 1.178100925 1.312657747 0.968864094 1.123043399 1.192090741 1 10.91249025 -8.474926302 0.926541607 1.015442583 1.177457891 0 0.105472845 0.418793008 0.740719549 0.034073004 0.019185203 3.35E-09 8.474926302 0.162015308 VS(ph)KSPSPASTSTVPNMTDAPTAPK ddPTM_HeLa_CUDC101_4h_R1 1 VSKSPSPASTSTVPNMTDAPTAPK 24 1 Q659A1 Q659A1 ICE2 Little elongation complex subunit 2 1 0 VS(0.344)KS(0.344)PS(0.106)PAS(0.041)T(0.051)S(0.051)T(0.064)VPNMTDAPTAPK 60.527 0.0036549 29948000 3800.9 2798.9 2769 3147.5 3461.3 3016.2 3525.6 3340.4 3769.2 3762.4 TRUE FALSE FALSE 3355.364264 2885.130791 2918.700516 3275.868655 3205.966795 2958.67101 3661.583573 3720.657634 3613.831981 3740.021077 0.897151164 0.771420998 0.780396809 0.875895774 0.857205542 0.791084047 0.979027523 0.994822638 0.96625979 1 11.86883069 -8.474673589 1.009085553 0.986322298 0.864801602 0.279026342 0.073040216 0.433447685 0.904027922 0.026802141 0.01583058 3.35E-09 8.474673589 -0.121520696 RGS(ph)IGENQIK ddPTM_HeLa_CUDC101_4h_R1 2 RGSIGENQIK 10 1 E9PGZ1;Q05682-5;Q05682-4;C9J813 E9PGZ1 CALD1 Caldesmon 1 0 RGS(1)IGENQIK;RGS(1)IGENQIK ; 145.31 0.0016403 116562000 5624.8 4301.6 4527.1 4591.9 4573 4683.8 4147.7 3755.8 5123.4 5729.3 TRUE FALSE FALSE 4965.469471 4434.127197 4771.84872 4779.17753 4235.658901 4594.464319 4307.678178 4183.345091 4912.211283 5695.221869 0.871865853 0.778569703 0.837868801 0.839155636 0.743721491 0.806722622 0.756367053 0.73453593 0.862514472 1 12.47553633 -8.473701347 0.216183461 1.104132961 0.7119073 0.508479009 0.052721498 0.929059812 0.106255356 0.12091273 0.050554212 3.36E-09 8.473701347 -0.392225661 SCVEEPEPEPEAAEGDGDKKGNAEGS(ph)SDEEGKLVIDEPAK ddPTM_HeLa_CUDC101_4h_R1 1 SCVEEPEPEPEAAEGDGDKKGNAEGSSDEEGKLVIDEPAK 40 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 S(0.001)CVEEPEPEPEAAEGDGDKKGNAEGS(0.5)S(0.5)DEEGKLVIDEPAK 44.915 0.0065963 45688000 2481 2189.1 2411.1 2251.3 2140.4 2385.5 2008.6 2348.6 2260.4 1923.3 TRUE FALSE FALSE 2190.180941 2256.543576 2541.451359 2343.117745 1982.506956 2340.000562 2086.072375 2615.955131 2167.225355 1911.860126 1.145575929 1.18028696 1.329308209 1.22556965 1.036951882 1.223939205 1.091121859 1.368277467 1.133568992 1 10.90076126 -8.468737044 0.672766947 1.005322512 1.20208346 0.19100395 0.100731049 0.509173145 0.480441165 0.048087981 0.022054763 3.40E-09 8.468737044 0.196760948 FIQESEEK ddPTM_HeLa_CUDC101_4h_R1 2 FIQESEEK 8 0 Q13129 Q13129 RLF Zinc finger protein Rlf 0 0 ; ; 135.77 0.027453 82432000 5056.8 5175.2 5173 4916.6 5610 5153.7 4827.3 5923.3 5225.6 4569.2 FALSE FALSE TRUE 4464.04957 5334.641778 5452.668027 5117.120199 5196.161477 5055.401759 5013.490578 6597.584529 5010.198556 4542.022195 0.982833059 1.174508082 1.200493479 1.126617172 1.144019393 1.113028854 1.103801426 1.452565453 1.103076634 1 12.14911904 -1 0.203787023 0.966410759 2.651918038 0.390148737 0.095785787 28.8360313 0.333738541 0.084018362 15.73485122 0.1 1 1.685507279 VSPS(ph)KSPSLSPSPPSPLEK ddPTM_HeLa_CUDC101_4h_R1 1 VSPSKSPSLSPSPPSPLEK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VS(0.025)PS(0.507)KS(0.379)PS(0.079)LS(0.008)PS(0.002)PPSPLEK 66.467 0.010754 32597000 951.57 857.29 706.29 727.08 877.04 980.85 667.64 794.91 963.07 917.87 TRUE FALSE FALSE 840.0284071 883.7020888 744.4741738 756.7334651 812.3425065 962.1419205 693.3910984 885.3993413 923.371847 912.4104684 0.920669409 0.968535675 0.815942166 0.829378324 0.890325719 1.054505569 0.75995522 0.97039586 1.012013648 1 9.833539189 -8.467686399 0.590246141 0.999439921 0.892381929 0.213344582 0.080970111 0.976349069 0.707283646 0.049032401 0.020655358 3.41E-09 8.467686399 -0.107057991 FITALK(ac)STGLR ddPTM_HeLa_CUDC101_4h_R1 1 FITALKSTGLR 11 1 O94925-3;O94925 O94925-3 GLS "Glutaminase kidney isoform, mitochondrial" 0 1 FITALK(1)STGLR 80.737 0.040655 364030 165.66 157.79 0 0 151.63 126.59 72.651 0 0 0 FALSE TRUE FALSE 146.2415859 162.6513229 0 0 140.444557 124.1755067 75.45317341 0 0 0 0 FITHAPPGEFNEVFNDVR ddPTM_HeLa_CUDC101_4h_R1 2 FITHAPPGEFNEVFNDVR 18 0 P52907 P52907 CAPZA1 F-actin-capping protein subunit alpha-1 0 0 ; ; 106.35 0.00061846 56189000 2249.3 1958.79 2198.8 1931.08 2356 2134 2003.76 1764.25 2025.61 2408.9 FALSE FALSE TRUE 1985.640464 2019.137998 2317.673779 2009.837789 2182.202574 2093.297505 2081.045694 1965.085089 1942.113498 2394.571756 0.82922571 0.843214656 0.967886543 0.839330784 0.91131225 0.874184497 0.869068003 0.820641555 0.811048361 1 11.22555195 -9.400220943 1.069840164 1.001689349 0.868884609 0 0.071140244 0.298491627 0.598738416 0.030365173 0.007350251 3.98E-10 9.400220943 -0.132804739 FITIFGTR ddPTM_HeLa_CUDC101_4h_R1 2 FITIFGTR 8 0 P08758;D6RBE9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 0 ; ; 119.29 0.014757 12277700 4752.2 3431.2 3154.6 3223.4 2808.5 3417.8 2897.3 2713.75 2825.3 2072.59 FALSE FALSE TRUE 4195.15432 3536.911205 3325.147218 3354.864185 2601.32255 3352.611159 3009.049832 3022.672331 2708.839938 2060.262143 2.036223563 1.716728727 1.613943755 1.628367631 1.262617264 1.627274069 1.460517945 1.467129968 1.31480353 1 11.0086122 -9.587399362 1.397945679 1.002424713 1.652154545 0.365175671 0.214063765 0.27494965 0.969435896 0.165345273 0.039081114 2.59E-10 9.587399362 0.649729832 LLEDS(ph)DS(ph)EDEAAPSPLQPALRPNPTAILDEAPKPK ddPTM_HeLa_CUDC101_4h_R1 1 LLEDSDSEDEAAPSPLQPALRPNPTAILDEAPKPK 35 2 Q9BW85 Q9BW85 CCDC94 Coiled-coil domain-containing protein 94 2 0 LLEDS(0.945)DS(0.902)EDEAAPS(0.12)PLQPALRPNPT(0.033)AILDEAPKPK 45.836 0.012001 34195000 1306.8 1054.7 856.3 1185.5 805.39 1036.3 1251.6 941.8 1213.2 1444 TRUE FALSE FALSE 1153.618885 1087.194057 902.5941682 1233.849814 745.9779843 1016.534304 1299.874631 1049.010705 1163.191383 1435.411024 0.803685402 0.757409577 0.628805376 0.859579447 0.51969643 0.708183431 0.905576598 0.730808589 0.810354221 1 10.48724819 -8.467363175 0.63284957 0.996039108 0.72701093 0.202246164 0.116494301 0.458474407 0.382593693 0.05859954 0.025826145 3.41E-09 8.467363175 -0.269028178 FK(ac)LNTK ddPTM_HeLa_CUDC101_4h_R1 1 FKLNTK 6 1 E9PEX6;P09622-2;P09622-3;P09622 E9PEX6 DLD "Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial" 0 1 FK(1)LNTK 89.298 0.036285 4583400 4701.3 3616.1 3454.3 4012 4360 3729 3675 3535.9 3257 2329.7 FALSE TRUE FALSE 4150.220741 3727.507755 3641.049907 4175.626701 4038.371486 3657.875538 3816.745981 3938.412563 3122.745081 2315.842841 1.792099476 1.609568529 1.572235319 1.803069979 1.743802047 1.579500765 1.64810233 1.700638961 1.348427029 1 11.17732164 -9.31338663 0.835674227 0.959663484 1.685624554 0.681417457 0.130153645 0.161145519 0.18357043 0.078087288 0.016770928 4.86E-10 9.31338663 0.72596107 FKDDDGDEEDENGVGDAELR ddPTM_HeLa_CUDC101_4h_R1 2 FKDDDGDEEDENGVGDAELR 20 1 Q6NZY4 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 0 0 ; ; 213.64 9.57E-25 25839000 5608.1 4938.3 5471.8 4419.4 4650.1 4897.4 4860.1 4828.9 5087.7 5634.4 FALSE FALSE TRUE 4950.727019 5090.44317 5767.622059 4599.642234 4307.071387 4803.990255 5047.555685 5378.602457 4877.982853 5600.886338 0.883918494 0.908863859 1.029769524 0.821234704 0.768998178 0.857719647 0.901206591 0.960312731 0.87093052 1 12.45143944 -6.241033369 24.88301396 0.946256752 0.858685554 0.253621006 0.065118739 809.3770197 986951.6123 0.010614645 0.017589343 5.74E-07 6.241033369 -0.087571198 FKDIFQEIYDK ddPTM_HeLa_CUDC101_4h_R1 2 FKDIFQEIYDK 11 1 O75874 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 0 ; ; 152.4 0.00059151 11476600 8619.1 6345.3 5457.6 6338 5962.3 6748.1 5602.4 5739.3 6174.9 6947.6 FALSE FALSE TRUE 7608.782164 6540.791172 5752.654364 6596.491035 5522.473008 6619.391236 5818.486445 6392.638713 5920.368008 6906.275366 1.101720068 0.947079406 0.832960468 0.955144515 0.799631164 0.958460369 0.84249268 0.925627545 0.857244708 1 12.75369214 -7.049872516 5.063527596 1.047570977 0.886257691 0.127768786 0.080810954 0.094968559 5.468638622 0.009308487 0.011615912 8.92E-08 7.049872516 -0.161313286 FKGPGDTSNFDDYEEEEIR ddPTM_HeLa_CUDC101_4h_R1 2 FKGPGDTSNFDDYEEEEIR 19 1 K7ERP6;P17612-2;P17612 K7ERP6 PRKACA cAMP-dependent protein kinase catalytic subunit alpha 0 0 ; ; 167.35 2.73E-06 30002000 2484.2 2447.4 2452.4 1969.38 2717.3 2192.3 2111.18 1999.42 2737.3 2794.3 FALSE FALSE TRUE 2193.005842 2522.801493 2584.984162 2049.699829 2516.850193 2150.48553 2192.60892 2227.025891 2624.467335 2777.679379 0.78951007 0.908240711 0.930627264 0.737918078 0.906098166 0.774202216 0.789367173 0.801757722 0.94484171 1 11.43966437 -9.508106476 0.731918217 1.028487608 0.826590071 0.436455917 0.063620466 0.653439387 0.47662004 0.086640113 0.012241216 3.10E-10 9.508106476 -0.201897537 FKGQILMPNIGYGSNKK ddPTM_HeLa_CUDC101_4h_R1 2 FKGQILMPNIGYGSNKK 17 2 D3YTB1;F8W727;P62910 D3YTB1 RPL32 60S ribosomal protein L32 0 0 ; ; 68.751 0.014738 1836780 1488.9 1575.47 1405.77 1423 1733.2 1554.23 1465.03 1665.39 1578.63 1204.73 FALSE FALSE TRUE 1314.373399 1624.008363 1481.770178 1481.036091 1605.345289 1524.585652 1521.536698 1854.971266 1513.558203 1197.564212 1.097538976 1.356092931 1.237320023 1.236707039 1.340508736 1.273072155 1.270526192 1.54895349 1.263863923 1 10.2258873 -3.515081554 0.108191076 0.785897229 2.139864016 0.263495918 0.119685982 20.61998439 0.291268517 0.691846913 4.260439569 0.000305435 3.515081554 1.353966787 GKGGVTGS(ph)PEASISGSK ddPTM_HeLa_CUDC101_4h_R1 1 GKGGVTGSPEASISGSK 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GKGGVT(0.213)GS(0.786)PEASISGSK 206.8 6.98E-23 294640000 2924.2 3226.4 2982.9 2566.2 2600.6 2421.3 2710.4 2085.6 3013.1 2175.3 TRUE FALSE FALSE 2581.429709 3325.80156 3144.164597 2670.860728 2408.758919 2375.117737 2814.941036 2323.016274 2888.898743 2162.361219 1.193801335 1.538041624 1.454042261 1.235159373 1.113948446 1.098390831 1.301790381 1.074296123 1.335992672 1 11.07839183 -8.462802512 1.132515717 1.029947863 1.253939716 0 0.172781053 0.421485943 1.099152301 0.048887252 0.030771165 3.45E-09 8.462802512 0.223991853 RPPS(ph)PPGPEER ddPTM_HeLa_CUDC101_4h_R1 1 RPPSPPGPEER 11 1 F5H1N7;Q6ZU35 F5H1N7 KIAA1211 Uncharacterized protein KIAA1211 1 0 RPPS(1)PPGPEER 72.891 0.028957 25203000 1267 969.48 961 926.35 1071.3 1045.7 1130 929.89 1252.4 1358 TRUE FALSE FALSE 1118.484181 999.3485297 1012.954567 964.130557 992.2723333 1025.755015 1173.584479 1035.744919 1200.775542 1349.922556 0.828554332 0.740300638 0.750379763 0.714211755 0.735058711 0.75986212 0.869371709 0.767262473 0.889514392 1 10.39866093 -8.46165091 0.690817648 0.992046778 0.762665844 0.632628936 0.052008946 0.219776567 0.219038779 0.024238647 0.01139293 3.45E-09 8.46165091 -0.229380935 EVGS(ph)SS(ph)SDVSGKESVPVEEPLR ddPTM_HeLa_CUDC101_4h_R1 1 EVGSSSSDVSGKESVPVEEPLR 22 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 2 0 EVGS(0.522)S(0.472)S(0.472)S(0.472)DVS(0.062)GKES(0.001)VPVEEPLR 52.298 0.024296 32481000 716.46 676.88 604.27 846.06 707.16 688.81 597.81 596.95 685.79 478.82 TRUE FALSE FALSE 632.4776449 697.7338705 636.938664 880.5659838 654.9942157 675.6720969 620.867732 664.904375 657.5214459 475.9719573 1.328812833 1.465913821 1.338185274 1.850037529 1.37611934 1.419562826 1.304420822 1.396940229 1.38142896 1 8.894732767 -8.461441067 0.658170186 1.011167153 1.454973094 0.129411039 0.182909273 0.375580847 0.339752538 0.079563121 0.036197624 3.46E-09 8.461441067 0.443805941 LGFSSPYEGVLNKS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 LGFSSPYEGVLNKSPK 16 1 M0R0P8;Q13459-2;Q13459;M0R240;M0QXP0 M0R0P8 MYO9B Unconventional myosin-IXb 1 0 LGFSSPYEGVLNKS(1)PK;LGFSSPYEGVLNKS(1)PK ; 76.027 0.012679 57883000 4365.2 3328.8 3244.1 3505 4148.8 3822.5 3664.6 2839.42 3741.3 4500.9 TRUE FALSE FALSE 3853.517873 3431.356382 3419.485859 3647.94905 3842.75129 3749.592181 3805.94485 3162.648095 3587.08203 4474.128447 0.861289058 0.766932917 0.76427977 0.815342942 0.858882648 0.838060915 0.850656143 0.706874676 0.801738724 1 12.12739096 -8.458612586 0.688869249 0.994146114 0.804733881 0 0.074809361 0.270195665 0.267966602 0.024573429 0.011560075 3.48E-09 8.458612586 -0.189412233 FLCADYAEQDELDYHR ddPTM_HeLa_CUDC101_4h_R1 1 FLCADYAEQDELDYHR 16 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 0 161.94 4.54E-05 10952000 3534.1 3151.8 3297.9 3415.5 3749 3408.9 3202.7 3179.6 3503.1 1941.7 FALSE FALSE TRUE 3119.838155 3248.903222 3476.19445 3554.798853 3472.443739 3343.880912 3326.229212 3541.552812 3358.700735 1930.150682 1.616370258 1.683238129 1.80099641 1.841720901 1.799053189 1.732445525 1.723300281 1.834858203 1.740123591 1 10.91449776 -8.800225414 0.479898555 0.906038289 1.804076258 0.031708061 0.231520536 0.148604108 0.059986844 0.061677625 0.016307695 1.58E-09 8.800225414 0.898037969 FLDAGHK ddPTM_HeLa_CUDC101_4h_R1 1 FLDAGHK 7 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 75.854 0.00268 0 6655.2 4090.5 7273.6 7357 6486.4 5424.6 5612.4 3682 6469.7 7012.5 FALSE FALSE TRUE 5875.087545 4216.523457 7666.832817 7657.05026 6007.911195 5321.134793 5828.872148 4101.143997 6203.016228 6970.789338 0.842815248 0.604884648 1.099851458 1.098448094 0.861869568 0.763347526 0.836185382 0.588332798 0.889858512 1 12.76710631 -3.677227141 0.855004056 0.920183694 7.30E-07 0.314971388 0.139468612 5.123381907 1.374540007 0.023136656 5.628847668 0.000210268 3.677227141 -0.920182964 FLDELDAVQMD ddPTM_HeLa_CUDC101_4h_R1 3 FLDELDAVQMD 11 0 A0A2R8YEY5;E7EQB9;O15160 A0A2R8YEY5 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 0 0 ;; ;; 119.77 0.02091 14832700 12124 10561.6 9044.6 9180.7 10905.6 10279.9 9142 9333.7 10531.4 10622.4 FALSE FALSE TRUE 10702.8431 10886.99038 9533.578434 9555.128628 10101.11562 10083.82803 9494.610002 10396.21068 10097.29123 10559.21749 1.013601918 1.031041399 0.902867892 0.904908781 0.956615926 0.954978723 0.899177426 0.984562605 0.956253742 1 13.3662153 -6.764900048 24.99998488 1.00844897 0.932955222 0.510500316 0.031422415 39.04707756 282077.8689 0.004114255 0.005528791 1.72E-07 6.764900048 -0.075493748 QAPPHIELSNSS(ph)PDPMAEAER ddPTM_HeLa_CUDC101_4h_R1 3 QAPPHIELSNSSPDPMAEAER 21 0 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5;C9JVY5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 QAPPHIELSNS(0.242)S(0.758)PDPMAEAER;QAPPHIELS(0.005)NS(0.144)S(0.851)PDPMAEAER;QAPPHIELSNS(0.245)S(0.755)PDPMAEAER ;; 190.61 6.52E-14 51892200 3706.63 2851.96 2971.42 2843.12 3699.76 3460.71 2718.85 2879.66 4046.9 3656.1 TRUE FALSE FALSE 3272.14445 2939.825507 3132.063953 2959.074723 3426.836076 3394.702723 2823.716955 3207.468854 3880.085069 3634.353355 0.900337455 0.808899196 0.861794011 0.814195658 0.942901183 0.934059623 0.776951683 0.882541828 1.0676136 1 11.82748298 -8.457135205 0.764853166 0.99281776 0.861792484 0.563758745 0.05668285 0.363981022 0.444231633 0.023206961 0.011734512 3.49E-09 8.457135205 -0.131025276 FLEESVSMSPEER ddPTM_HeLa_CUDC101_4h_R1 1 FLEESVSMSPEER 13 0 A0A087WTB8;Q5TBK7;P15374 A0A087WTB8 UCHL3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L3 0 0 108.98 0.027248 2431600 851.33 762.47 850.1 690.43 978.49 830.44 673.23 853.37 889.39 1077.9 FALSE FALSE TRUE 751.5383879 785.960797 896.0589774 718.5887197 906.3087421 814.6007406 699.1967066 950.5141914 852.7289678 1071.488603 0.70139653 0.733522312 0.836274856 0.670645229 0.845840767 0.760251428 0.652547031 0.887096875 0.79583578 1 10.06540079 -9.336326698 0.965213666 1.005896094 0.755126386 0.121424974 0.095523344 0.291697912 0.468338129 0.052407287 0.012562692 4.61E-10 9.336326698 -0.250769708 FLEMCNDLLAR ddPTM_HeLa_CUDC101_4h_R1 1 FLEMCNDLLAR 11 0 A0A087WYC1;P34932;A0A087WTS8 A0A087WYC1 HSPA4 Heat shock 70 kDa protein 4 0 0 188.87 2.67E-10 13867000 1258.5 1137.8 1145.8 995.62 1111.5 1129.7 1073 1052.4 1088.7 770.95 FALSE FALSE TRUE 1110.980538 1172.854269 1207.745414 1036.225687 1029.506859 1108.152855 1114.385969 1172.200962 1043.823325 766.3643551 1.449676685 1.530413388 1.575941529 1.352131894 1.343364749 1.445986948 1.454120305 1.529560912 1.362045766 1 9.58188665 -9.061812106 0.735249055 0.982553446 1.460035134 0.290048054 0.130264283 0.227069785 0.213057484 0.063343151 0.016769102 8.67E-10 9.061812106 0.477481688 EKDDLS(ph)PQPLMTDFER ddPTM_HeLa_CUDC101_4h_R1 2 EKDDLSPQPLMTDFER 16 1 Q5THJ4-2;Q5THJ4 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 EKDDLS(1)PQPLMTDFER;EKDDLS(0.996)PQPLMT(0.004)DFER ; 114.75 0.00059811 20321000 8350.3 7940.4 7215.2 7539.4 8690.9 7675.5 7870.6 7505.1 6865.8 6365 TRUE FALSE FALSE 7371.490492 8185.034312 7605.275537 7846.88932 8049.789622 7529.102626 8174.171678 8359.450247 6582.788818 6327.140697 1.165058728 1.293638739 1.202008285 1.240195168 1.272263414 1.189969211 1.291921908 1.321205051 1.040405 1 12.62733796 -8.453885384 0.380575946 0.959115034 1.281455176 0.829646871 0.04239661 0.399006318 0.120755527 0.053236042 0.019335085 3.52E-09 8.453885384 0.322340141 SDATNYASHS(ph)PPVNR ddPTM_HeLa_CUDC101_4h_R1 2 SDATNYASHSPPVNR 15 0 Q96FJ0;Q96FJ0-2 Q96FJ0 STAMBPL1 AMSH-like protease 1 0 SDATNYASHS(1)PPVNR;SDATNYAS(0.009)HS(0.991)PPVNR ; 180.7 7.62E-09 18454100 2155.99 1371.89 1488.99 1376.7 1886.62 1951.66 1630.44 1865.44 2235.74 2493.47 TRUE FALSE FALSE 1903.26812 1414.156305 1569.489303 1432.847777 1747.447801 1914.435337 1693.326617 2077.794149 2143.581851 2478.63873 0.767868305 0.570537484 0.633206157 0.578078507 0.705003025 0.772373688 0.683167981 0.838280353 0.864822221 1 11.27533229 -8.453037001 0.842669185 0.977055907 0.684802286 0.528945386 0.088279287 0.243988587 0.360063925 0.035070955 0.018953839 3.52E-09 8.453037001 -0.292253622 AS(ph)GEMASAQYITAALR ddPTM_HeLa_CUDC101_4h_R1 2 ASGEMASAQYITAALR 16 0 A6NJA2;P54578-2;P54578-3;P54578 A6NJA2 USP14 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 14 1 0 AS(1)GEMASAQYITAALR;AS(0.991)GEMAS(0.009)AQYITAALR ; 252.79 3.65E-56 80215000 1830.9 1197.34 1364.13 1236.31 1240.28 1549.92 1192.11 1284.02 1294.43 2315.11 TRUE FALSE FALSE 1616.284677 1234.228626 1437.878994 1286.732066 1148.787015 1520.357858 1238.090082 1430.187647 1241.073048 2301.339623 0.702323404 0.536308772 0.624800868 0.559123066 0.49918187 0.660640369 0.537986688 0.621458751 0.539282875 1 11.16825819 -8.452872494 0.561845535 1.007619255 0.565363845 0 0.148961948 0.175348874 0.115484792 0.035889665 0.014894175 3.52E-09 8.452872494 -0.44225541 FLESGGQDGAGDDDDLEDLEEAEEPDMEEDDDQKAVKDEL ddPTM_HeLa_CUDC101_4h_R1 6 FLESGGQDGAGDDDDLEDLEEAEEPDMEEDDDQKAVKDEL 40 2 P07237;H7BZ94;H0Y3Z3 P07237 P4HB Protein disulfide-isomerase 0 0 ;;;;; ;;;;; 163.87 7.02E-33 132637600 33937.3 32296.8 33576.7 33714.9 47162 36944.9 38034.2 40423.4 37937.9 34813 FALSE FALSE TRUE 29959.22114 33291.82613 35391.95797 35089.93935 43682.95322 36240.23759 39501.19183 45025.03646 36374.0837 34605.93073 0.865725051 0.962026607 1.022713657 1.013986291 1.262296731 1.047226207 1.141457288 1.301078616 1.051093929 1 15.07873169 -6.114403022 1.447731408 0.937494442 1.177795721 0.542350331 0.08554764 0.197141093 0.813789754 0.013584067 0.027394792 7.68E-07 6.114403022 0.240301279 LMLSTSEYSQS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 LMLSTSEYSQSPK 13 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LMLSTSEYS(0.007)QS(0.993)PK;LMLS(0.002)T(0.006)SEYS(0.049)QS(0.944)PK;LMLSTSEYS(0.001)QS(0.999)PK ;; 262.48 5.32E-70 235396000 10689.8 9723.3 7950.4 7918.1 7658.8 8298.5 7018.2 4135.2 11580 11950.2 TRUE FALSE FALSE 9436.757849 10022.86335 8380.222673 8241.034343 7093.825582 8140.219939 7288.894325 4605.934453 11102.6675 11879.11968 0.794398752 0.843737888 0.705458224 0.693741166 0.597167616 0.685254477 0.613588761 0.387733652 0.934637229 1 13.53614031 -4.599810202 0.140678194 1.125894169 1.94E-15 0.871289494 0.060451767 5.53294704 0.14979013 0.239850904 1.23188203 2.51E-05 4.599810202 -1.125894169 down GGLS(ph)PANDTGAKK ddPTM_HeLa_CUDC101_4h_R1 1 GGLSPANDTGAKK 13 1 K7EN42;B7Z8J4;P30419 K7EN42 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 1 0 GGLS(1)PANDTGAKK 139.66 0.0015689 8645700 810.68 859.68 982.8 575.29 821.21 856.54 699.74 668.15 866.11 501.15 TRUE FALSE FALSE 715.6533193 886.1657218 1035.933141 598.7528128 760.6309744 840.2029266 726.7292062 744.2094952 830.4085792 498.1691375 1.436566952 1.778845085 2.079480768 1.201906677 1.526852864 1.686581651 1.458800137 1.493889202 1.666920965 1 8.960491837 -8.452722114 0.871477393 1.046336644 1.591460037 0 0.2947614 0.331056677 0.521475631 0.089136185 0.04920227 3.53E-09 8.452722114 0.545123393 FLGDIEVWDQAEK ddPTM_HeLa_CUDC101_4h_R1 2 FLGDIEVWDQAEK 13 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 ; ; 216.06 1.47E-23 29153000 4947.5 4590.9 3784.6 4219.5 4624.4 3970.8 4144.3 4147.2 3526.6 4164.3 FALSE FALSE TRUE 4367.56155 4732.340187 3989.206924 4391.589448 4283.267225 3895.063606 4304.147039 4619.300484 3381.232055 4139.530558 1.055086196 1.14320697 0.963685826 1.060890694 1.034722939 0.940943315 1.039766944 1.115899598 0.816815339 1 12.01525145 -9.356983371 1.203082139 1.001055882 1.042359669 0.148722714 0.081959162 1.046260111 2.809730505 0.033655382 0.009711907 4.40E-10 9.356983371 0.041303786 DSISAVSSEKVS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 4 DSISAVSSEKVSPSK 15 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DSISAVSS(0.004)EKVS(0.992)PS(0.004)K;DSISAVS(0.001)S(0.002)EKVS(0.929)PS(0.069)K;DSISAVSSEKVS(0.999)PS(0.001)K;DSISAVS(0.029)S(0.269)EKVS(0.685)PS(0.017)K ;;; 181.51 2.08E-16 236827000 16906.5 14035.6 12431.91 12956.6 11787.01 13210.3 12299.6 12526.06 15370.94 19616.4 TRUE FALSE FALSE 14924.7457 14468.0202 13104.01666 13485.02615 10917.50576 12958.33554 12773.99969 13951.97604 14737.34335 19499.72078 0.765382534 0.741960378 0.672010477 0.691549705 0.559880107 0.664539543 0.655086287 0.715496196 0.755772019 1 14.25116585 -8.449842005 0.426309393 1.033230338 0.641172203 0.399962574 0.084229182 0.263261523 0.099555764 0.044372506 0.016450116 3.55E-09 8.449842005 -0.392058134 FLGVAEQLHNEGFK ddPTM_HeLa_CUDC101_4h_R1 2 FLGVAEQLHNEGFK 14 0 P31327-2;P31327;P31327-3 P31327-2 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" 0 0 ; ; 106.54 0.0040797 16004000 9245 8416.9 7397.7 7687.6 8202.6 8595.4 8311.7 6503.4 6739.9 8135.4 FALSE FALSE TRUE 8161.315115 8676.214713 7797.642039 8001.133557 7597.51054 8431.457066 8632.285053 7243.720768 6462.078469 8087.010279 1.009188171 1.072858128 0.964218144 0.989380906 0.939470865 1.042592599 1.067426002 0.895722958 0.799068908 1 12.98139073 FLIATGERPR ddPTM_HeLa_CUDC101_4h_R1 3 FLIATGERPR 10 1 E2QRB9;E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881-7;Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881;E9PKD3 E2QRB9 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ;; ;; 143.7 0.0010086 43923000 6519.84 6417.28 5586.01 5522.24 5710.32 6736.64 6148.1 5867.57 6593.52 2057.35 FALSE FALSE TRUE 5755.594239 6614.98879 5888.006597 5747.460816 5289.08107 6608.149816 6385.234276 6535.510451 6321.732315 2045.112791 2.814316288 3.234534946 2.879062037 2.810339284 2.586205071 3.231190889 3.122191747 3.195672376 3.091141155 1 10.9979647 -9.081957522 0.544367924 0.715937297 3.043724078 0 0.679356241 0.23591945 0.108284957 0.279136033 0.056794068 8.28E-10 9.081957522 2.327786781 FLISLTNPHDR ddPTM_HeLa_CUDC101_4h_R1 1 FLISLTNPHDR 11 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 0 0 77.288 0.030469 132350 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 FLIVAHDDGR ddPTM_HeLa_CUDC101_4h_R1 2 FLIVAHDDGR 10 0 Q16658 Q16658 FSCN1 Fascin 0 0 ; ; 121.83 0.0040623 180698000 13899.5 12267.4 10687.4 12975 13088.5 12421.6 10684.3 10440.1 10580.9 9588.8 FALSE FALSE TRUE 12270.22168 12645.34405 11265.19317 13504.17658 12122.98743 12184.67868 11096.39703 11628.55878 10144.75082 9531.765391 1.287297911 1.326652885 1.181857999 1.416755032 1.271851219 1.278323393 1.164149197 1.219979543 1.064309748 1 13.21852773 -9.172725932 0.810242649 0.990872872 1.27022468 0.633794005 0.071065185 0.311755105 0.351456924 0.05475654 0.013817499 6.72E-10 9.172725932 0.279351808 FLLSLPEHR ddPTM_HeLa_CUDC101_4h_R1 2 FLLSLPEHR 9 0 Q15008;Q15008-4;C9J7B7 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 0 ; ; 89.886 0.0019343 0 5526.44 4496.223 3717.47 4388.01 5213.198 4851.39 4512.1 4537 4661.7 4048.8 FALSE FALSE TRUE 4878.639081 4634.746301 3918.447673 4566.972014 4828.63077 4758.857819 4686.133208 5053.473741 4469.542753 4024.717558 1.212169304 1.151570572 0.973595691 1.134731059 1.199744007 1.182407896 1.164338402 1.255609535 1.110523332 1 11.97467183 -9.436643747 1.061323179 0.996103699 1.159542665 0.171831941 0.077663881 0.458006845 0.886837817 0.058118523 0.013205047 3.66E-10 9.436643747 0.163438966 (ac)MDEPS(ph)PLAQPLELNQHSR ddPTM_HeLa_CUDC101_4h_R1 4 MDEPSPLAQPLELNQHSR 18 0 Q13085;A0A087X2F8;A0A087X126;A0A0C4DGT1 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 0 MDEPS(1)PLAQPLELNQHSR;MDEPS(1)PLAQPLELNQHSR;MDEPS(1)PLAQPLELNQHSR;MDEPS(1)PLAQPLELNQHSR ;;; 159.69 8.07E-12 59211800 1291.11 975.43 965.86 930.263 1121.52 972.05 919.8 1048.51 1189.93 1461.74 TRUE FALSE FALSE 1139.768043 1005.481842 1018.077313 968.2031461 1038.787704 953.5097658 955.2769941 1167.86814 1140.880582 1453.045505 0.784399414 0.691982349 0.700650674 0.666326789 0.714903766 0.656214662 0.657430886 0.803738173 0.785165074 1 10.50486417 -8.449216228 0.563256557 1.004689315 0.687085113 0.402818171 0.076910842 0.199194406 0.132025998 0.02927032 0.012209207 3.55E-09 8.449216228 -0.317604202 GFTECEMTKS(ph)SPLK ddPTM_HeLa_CUDC101_4h_R1 3 GFTECEMTKSSPLK 14 1 Q9NQW6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 GFTECEMT(0.008)KS(0.783)S(0.209)PLK;GFTECEMTKS(0.62)S(0.38)PLK;GFTECEMTKS(0.5)S(0.5)PLK ;; 138.42 0.0028736 695598000 8944.1 9224.5 8272.5 8368.7 10188.7 8604.4 9030 8043.7 9413.1 5415.1 TRUE FALSE FALSE 7895.686156 9508.695911 8719.736373 8710.011759 9437.0999 8440.285406 9378.290125 8959.362294 9025.088034 5382.890744 1.46681152 1.766466451 1.61989845 1.618091871 1.753165789 1.567983785 1.742240475 1.664414665 1.676624784 1 12.39416543 -8.446957057 0.547029927 0.982047416 1.693910831 0 0.218268855 0.167252934 0.104556799 0.054717677 0.022499779 3.57E-09 8.446957057 0.711863415 GSS(ph)PQNTTTPK ddPTM_HeLa_CUDC101_4h_R1 2 GSSPQNTTTPK 11 0 Q27J81-2;Q27J81 Q27J81-2 INF2 Inverted formin-2 1 0 GS(0.123)S(0.875)PQNT(0.002)TTPK;GS(0.005)S(0.993)PQNT(0.002)TTPK ; 161.25 0.00010816 10416100 9966 6187.3 8296.2 8831 7288.9 7141.4 7118 4079.6 8262.8 11295.1 TRUE FALSE FALSE 8797.800587 6377.923379 8744.717667 9191.166351 6751.212369 7005.189693 7392.543644 4544.005174 7922.203887 11227.91624 0.783564857 0.568041589 0.778837095 0.818599476 0.601288095 0.623908261 0.658407445 0.404706009 0.705580957 1 13.45480259 -8.43955055 0.073270293 1.696592862 3.27E-12 0.293671324 0.129885801 13.83843752 0.433340626 5.811184674 4.093773926 3.63E-09 8.43955055 -1.696592862 EEDEPEERS(ph)GDETPGSEVPGDKAAEEQGDDQDSEK ddPTM_HeLa_CUDC101_4h_R1 2 EEDEPEERSGDETPGSEVPGDKAAEEQGDDQDSEK 35 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 EEDEPEERS(0.985)GDET(0.011)PGS(0.004)EVPGDKAAEEQGDDQDSEK;EEDEPEERS(0.955)GDET(0.042)PGS(0.002)EVPGDKAAEEQGDDQDSEK ; 91.603 4.97E-10 304630000 1767.38 1612.16 1592.34 1828.08 2116.43 1505.91 1667.16 1239.5 1668.09 1207.03 TRUE FALSE FALSE 1560.210396 1661.828739 1678.426717 1902.637004 1960.305175 1477.187276 1731.46292 1380.59967 1599.330624 1199.850532 1.300337295 1.385029797 1.398863169 1.58572835 1.633791146 1.231142744 1.44306551 1.150643045 1.332941547 1 10.22863898 -8.439165704 0.659990915 1.012035026 1.416982687 0.141539082 0.167638455 0.385598105 0.35275512 0.074068281 0.034467023 3.64E-09 8.439165704 0.404947661 FLPAVSDENSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 FLPAVSDENSKR 12 1 P46087;P46087-4;P46087-2;F5GWB7;F5H709;F5H359;F5H5X6;P46087-3;F5H8G6 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 0 1 FLPAVSDENSK(1)R 100.69 0.011459 0 0 191.03 58.639 180.07 270.16 124.18 215.04 124.94 148.34 115.14 FALSE TRUE FALSE 0 196.9154079 61.80920171 187.4140329 250.230835 121.8114734 223.3341648 139.1626646 142.2253624 114.4551422 0 1.720459249 0.540029924 1.637445285 2.186278662 1.064272615 1.95128118 1.215870794 1.24262973 1 6.838638471 -6.63459481 1.364452204 0.560103751 1.613281324 0.172851372 0.568280616 0.307687758 1.153935115 0.100526376 0.158862872 2.32E-07 6.63459481 1.053177573 TASEGDGGAAAGAAAAGARPVSVAGSPLS(ph)PGPVR ddPTM_HeLa_CUDC101_4h_R1 1 TASEGDGGAAAGAAAAGARPVSVAGSPLSPGPVR 34 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 TASEGDGGAAAGAAAAGARPVS(0.109)VAGS(0.109)PLS(0.783)PGPVR 86.076 4.14E-09 15125000 546.05 662.17 482.99 517.31 611.93 470.05 470.44 796.74 644 344.59 TRUE FALSE FALSE 482.0428468 682.5706728 509.1019004 538.4081378 566.789143 461.0845794 488.5850284 887.4376611 617.4540474 342.5403634 1.407258526 1.992672239 1.486253752 1.571809326 1.654663811 1.346073715 1.426357535 2.590753546 1.802573108 1 8.420130188 -8.435569826 0.090775335 1.24E-18 2.594732057 0 0.41328773 17.23575028 0.682937145 11.57045754 7.557935046 3.67E-09 8.435569826 2.594732057 SLIPDIKPLAGQEAVVDLHADDSRISEDET(ph)ER ddPTM_HeLa_CUDC101_4h_R1 1 SLIPDIKPLAGQEAVVDLHADDSRISEDETER 32 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SLIPDIKPLAGQEAVVDLHADDS(0.24)RIS(0.323)EDET(0.438)ER 54.717 0.0016671 3168600 1846.4 1430 1455 1466.5 1317.3 1246 1477.8 1101.5 1595.4 2102.8 TRUE FALSE FALSE 1629.967791 1474.056605 1533.661701 1526.310209 1220.125403 1222.234626 1534.799241 1226.890308 1529.636937 2090.292452 0.779779781 0.705191565 0.733706759 0.730189791 0.583710381 0.584719437 0.734250961 0.586946724 0.731781304 1 11.02948909 -8.432823889 0.294881959 1.08955317 0.600539315 0.313555806 0.097087834 0.568243714 0.109519539 0.104837269 0.040076222 3.69E-09 8.432823889 -0.489013855 GIQLYDTPYEPEGQSVDSDS(ph)ESTVSPR ddPTM_HeLa_CUDC101_4h_R1 1 GIQLYDTPYEPEGQSVDSDSESTVSPR 27 0 Q15464 Q15464 SHB SH2 domain-containing adapter protein B 1 0 GIQLYDTPYEPEGQS(0.001)VDS(0.254)DS(0.68)ES(0.024)T(0.036)VS(0.005)PR 128.26 4.47E-11 7063200 1103.6 945.17 780.42 759.31 1022.9 1098.1 832.78 1052.5 1063.5 1073.2 TRUE FALSE FALSE 974.2376809 974.2895674 822.6118658 790.2779438 947.4427049 1077.155572 864.9006036 1172.312346 1019.66208 1066.816559 0.913219497 0.913268134 0.771090268 0.740781475 0.888102736 1.009691463 0.810730389 1.098888404 0.955798887 1 10.05909641 -8.432614317 0.883110211 0.989803468 0.884890484 0.095598372 0.101583718 0.735278415 1.191266924 0.037889746 0.021410695 3.69E-09 8.432614317 -0.104912985 AEEPPS(ph)PPVPK ddPTM_HeLa_CUDC101_4h_R1 2 AEEPPSPPVPK 11 0 Q96JK2-2;Q96JK2-3;Q96JK2 Q96JK2-2 DCAF5 DDB1- and CUL4-associated factor 5 1 0 AEEPPS(1)PPVPK;AEEPPS(1)PPVPK ; 97.957 0.015792 36014000 5377.1 4861.9 4758 4309.9 5511.4 4741.7 4495 4717.8 4594 4495.7 TRUE FALSE FALSE 4746.804489 5011.689376 5015.231872 4485.676351 5104.835002 4651.259973 4668.373656 5254.855282 4404.633376 4468.959376 1.062172217 1.12144438 1.122237069 1.003740686 1.14228718 1.040792628 1.044622084 1.175856579 0.985606045 1 12.12572322 -8.431792058 0.743807227 1.004121674 1.088492118 0.364777645 0.050266626 0.528700535 0.613752667 0.021444114 0.010877211 3.70E-09 8.431792058 0.084370444 FLQDYFDGNLKR ddPTM_HeLa_CUDC101_4h_R1 2 FLQDYFDGNLKR 12 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 ; ; 136.01 0.0014368 45351000 6985 6874.2 6250.4 6723.5 7735.8 7044.5 6237.7 6930.9 7585.7 6175.2 FALSE FALSE TRUE 6166.228889 7085.985954 6588.31553 6997.713391 7165.145446 6910.137899 6478.290178 7719.88564 7273.014235 6138.469636 1.004522178 1.154357091 1.073283069 1.139976868 1.167252731 1.125710203 1.055359163 1.257623821 1.184825318 1 12.58366331 -7.267706964 24.22723544 1.002135468 1.133933496 0.012749771 0.077568663 151.9638208 587413.0903 0.008014857 0.009288332 5.40E-08 7.267706964 0.131798029 KDTETENPPVENTLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 KDTETENPPVENTLSPK 17 1 Q96RS0 Q96RS0 TGS1 Trimethylguanosine synthase 1 0 KDTETENPPVENT(0.004)LS(0.996)PK 113.33 0.00013965 0 1478.2 1396.6 1271.8 1556.3 1396.4 1309.4 1385.7 1057.5 1266.4 1129 TRUE FALSE FALSE 1304.927637 1439.627591 1340.557355 1619.772641 1293.390354 1284.425377 1439.146913 1177.881525 1214.198456 1122.284658 1.162742115 1.282765099 1.194489603 1.443281461 1.15246194 1.144473791 1.282336797 1.049539007 1.081898828 1 10.13222293 -8.431500294 0.800623286 1.014793032 1.223844645 0.307968804 0.102534283 0.402766773 0.539856345 0.040834155 0.021736128 3.70E-09 8.431500294 0.209051613 TDLETS(ph)PGAAPR ddPTM_HeLa_CUDC101_4h_R1 1 TDLETSPGAAPR 12 0 Q6F5E8-2;Q6F5E8 Q6F5E8-2 RLTPR Leucine-rich repeat-containing protein 16C 1 0 TDLET(0.135)S(0.865)PGAAPR 146.5 0.00090034 13570000 4208.1 4081.4 3917.7 3608.3 4736 3851.3 3318.7 3065.7 3623.1 3297.1 TRUE FALSE FALSE 3714.832897 4207.143096 4129.502712 3755.46207 4386.634715 3777.842869 3446.703371 3414.686896 3473.754284 3277.488703 1.133438811 1.28364839 1.259959404 1.145835245 1.338413375 1.152663888 1.051629367 1.041860768 1.059882916 1 11.67837509 -8.426881182 0.9683507 1.01766908 1.180765521 0.283616102 0.091800278 0.416166686 0.805371033 0.03371458 0.020150166 3.74E-09 8.426881182 0.163096441 FLTESHDR ddPTM_HeLa_CUDC101_4h_R1 2 FLTESHDR 8 0 Q92743;A0A3B3IU24;H0Y7G9 Q92743 HTRA1 Serine protease HTRA1 0 0 ; ; 158.07 0.0012057 8224000 7899.3 6559 7074.1 6433.4 6805.1 7064.8 5793.3 5561.2 7037 5133.6 FALSE FALSE TRUE 6973.356029 6761.075016 7456.547244 6695.78186 6303.101331 6930.050711 6016.749522 6194.264529 6746.931882 5103.065119 1.366503438 1.324904711 1.461189907 1.312109821 1.235159886 1.358017299 1.179046197 1.213832155 1.322133213 1 12.31714834 -9.282726856 0.964000231 0.996395299 1.309992556 0 0.124908928 0.272853299 0.446421436 0.059946006 0.015470519 5.22E-10 9.282726856 0.313597257 FLVHNVK ddPTM_HeLa_CUDC101_4h_R1 2 FLVHNVK 7 0 D3YTB1;F8W727;P62910 D3YTB1 RPL32 60S ribosomal protein L32 0 0 ; ; 99.171 0.021144 21543900 33622 28978 27686 31380 28846 28554 27331 29130 29217 18692.2 FALSE FALSE TRUE 29680.88013 29870.77783 29182.78891 32659.81204 26718.08805 28009.38002 28385.16583 32446.04145 28012.66289 18581.01796 1.597376429 1.607596413 1.570569974 1.757697673 1.437923805 1.507419027 1.527643205 1.74619289 1.507595706 1 14.18154192 -9.150799377 0.691927871 0.955203561 1.595303389 0.180717832 0.181260855 0.244753051 0.190702545 0.091242287 0.020459499 7.07E-10 9.150799377 0.640099828 SPSS(ph)QETHDSPFCLR ddPTM_HeLa_CUDC101_4h_R1 1 SPSSQETHDSPFCLR 15 0 Q8TB45-2;Q8TB45 Q8TB45-2 DEPTOR DEP domain-containing mTOR-interacting protein 1 0 S(0.111)PS(0.111)S(0.683)QET(0.096)HDSPFCLR 103.87 0.0037659 5228500 13624 11911 10698 10055 12493 12099 10970 11499 13311 13273 TRUE FALSE FALSE 12027.01537 12277.96379 11276.36624 10465.08636 11571.41628 11868.23173 11393.11657 12807.99968 12762.31495 13194.05161 0.911548305 0.93056812 0.854655308 0.793167002 0.877017661 0.899513818 0.863504018 0.970740457 0.967277932 1 13.68760003 -8.42425789 0.614166928 0.997698572 0.877845827 0.429494866 0.044981586 0.469663387 0.373556457 0.026295127 0.011844646 3.76E-09 8.42425789 -0.119852744 FMERDPDELR ddPTM_HeLa_CUDC101_4h_R1 1 FMERDPDELR 10 1 A0A087WTB8;Q5TBK7;P15374 A0A087WTB8 UCHL3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L3 0 0 117.53 0.0069062 28720000 5095.7 4369.2 4151.6 4138.6 4883.6 4432.7 4413 4492.4 4046.5 3448.6 FALSE FALSE TRUE 4498.389771 4503.809873 4376.048054 4307.389997 4523.346558 4348.153633 4583.210888 5003.796657 3879.701557 3428.087574 1.312215535 1.313796622 1.276527498 1.256499405 1.319495626 1.268390477 1.33695852 1.459646683 1.131739337 1 11.74318825 -10.49696847 0.312306872 0.648949288 1.34416878 0.676721364 0.066981468 2.189279308 0.149023483 0.588097916 0.024379948 3.18E-11 10.49696847 0.695219492 FMQASEDLLK ddPTM_HeLa_CUDC101_4h_R1 2 FMQASEDLLK 10 0 Q32Q12;P22392-2;J3KPD9;E7ERL0;E5RHP0;P15531;P15531-2 Q32Q12;P15531 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 0 ; ; 189.38 7.52E-11 78127000 5537.7 3939.7 3612.4 4129.2 4854.9 4083.4 3622.4 3729.7 3859.2 4090.8 FALSE FALSE TRUE 4888.579201 4061.077487 3807.697271 4297.606624 4496.763699 4005.515948 3762.117181 4154.273972 3700.122143 4066.46774 1.202168445 0.998674463 0.936364805 1.056840211 1.105815658 0.985011121 0.925156038 1.021592753 0.90991061 1 11.98956045 FMQASEDLLKEHYVDLK ddPTM_HeLa_CUDC101_4h_R1 3 FMQASEDLLKEHYVDLK 17 1 Q32Q12;P22392-2;J3KPD9;E7ERL0;E5RHP0;P15531;P15531-2 Q32Q12;P15531 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 0 ;; ;; 102.39 0.004432 32161900 11602.8 11806 11624.6 12810.7 18598 12803.8 13435.6 15428.2 12357.7 11137 FALSE FALSE TRUE 10242.73737 12169.72887 12253.06104 13333.17572 17226.06259 12559.58885 13953.81559 17184.48393 11848.31038 11070.75663 0.925206625 1.099268033 1.106795267 1.204359934 1.555996864 1.13448333 1.260421131 1.552241143 1.070234924 1 13.43446621 -6.429249878 1.343120388 0.967414435 1.35240964 0.583901498 0.130474825 0.185897686 0.664977965 0.020938843 0.036735761 3.72E-07 6.429249878 0.384995205 GDAASSPAPAASVGS(ph)SQGGAR ddPTM_HeLa_CUDC101_4h_R1 1 GDAASSPAPAASVGSSQGGAR 21 0 F8WCC1;E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2 F8WCC1 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 0 GDAASSPAPAAS(0.004)VGS(0.763)S(0.233)QGGAR 191.89 2.22E-26 0 629.67 491.75 620.89 553.24 649.61 581.68 548.08 460.16 479.47 503.95 TRUE FALSE FALSE 555.8610371 506.9002346 654.4571915 575.8035185 601.6895645 570.5854231 569.2196292 512.5427544 459.7060437 500.952483 1.109608308 1.011872886 1.306425686 1.149417436 1.201091091 1.139001088 1.136274694 1.023136469 0.917663969 1 8.968529955 -8.42424467 0.610667149 1.003424488 1.147475083 0.393126986 0.083584258 0.669318196 0.526297439 0.044997017 0.020196655 3.76E-09 8.42424467 0.144050596 TSPTTPEASATNS(ph)PCTSKPATPAPSEK ddPTM_HeLa_CUDC101_4h_R1 1 TSPTTPEASATNSPCTSKPATPAPSEK 27 1 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 T(0.029)S(0.01)PT(0.021)T(0.07)PEAS(0.061)AT(0.061)NS(0.707)PCT(0.016)S(0.016)KPAT(0.009)PAPS(0.001)EK 63.559 0.0011865 22852000 1085.6 856.43 753.64 932.81 946.1 723.07 939.48 655.45 838.16 1159 TRUE FALSE FALSE 958.3476137 882.8155932 794.384058 970.8540237 876.3080879 709.2786445 975.7160583 730.0637786 803.61069 1152.106216 0.831822275 0.766262329 0.689505921 0.842677533 0.760613974 0.615636505 0.84689766 0.633677493 0.697514412 1 10.17005801 -8.423465657 0.352102489 1.048196441 0.706678367 0 0.118326947 0.715743206 0.190326033 0.098507828 0.036900764 3.77E-09 8.423465657 -0.341518074 LCDPDGLS(ph)DEEDQKPVR ddPTM_HeLa_CUDC101_4h_R1 3 LCDPDGLSDEEDQKPVR 17 1 Q96RY5 Q96RY5 CRAMP1L Protein cramped-like 1 0 LCDPDGLS(1)DEEDQKPVR;LCDPDGLS(1)DEEDQKPVR;LCDPDGLS(1)DEEDQKPVR ;; 92.38 0.0031536 24438000 4155.03 4479.52 4862.44 4428.13 4615.76 4941.19 3816.92 3467 4448.38 1685.66 TRUE FALSE FALSE 3667.983682 4617.528702 5125.318214 4608.728281 4275.264581 4846.945033 3964.139883 3861.669266 4265.015894 1675.633619 2.189012944 2.75569113 3.058734413 2.750439134 2.551431609 2.892604312 2.365755758 2.304602403 2.545315303 1 10.71049102 -8.422769433 0.68860997 1.060734179 2.680733312 0.105841924 0.515125622 0.180067319 0.17991907 0.138473225 0.0672729 3.78E-09 8.422769433 1.619999133 FNADEFEDMVAEK ddPTM_HeLa_CUDC101_4h_R1 2 FNADEFEDMVAEK 13 0 X1WI28;P27635;F8W7C6;A0A087WV22 X1WI28 RPL10 60S ribosomal protein L10 0 0 ; ; 186.13 2.75E-10 9828200 3958.4 3160.6 3009.3 3246.1 2935.6 3240.6 3106.7 2283.9 3437.9 3854.6 FALSE FALSE TRUE 3494.402353 3257.97434 3171.991861 3378.489989 2719.046637 3178.790954 3226.52646 2543.889944 3296.188307 3831.672668 0.911978307 0.850274703 0.82783477 0.881727194 0.709623935 0.829609215 0.842067353 0.663911081 0.860247885 1 11.9037586 -5.793489967 0.140382762 1.101768822 0.538698235 0.409743381 0.069252563 5.014901669 0.23450395 0.268039406 0.678625406 1.61E-06 5.793489967 -0.563070587 FNADEFEDMVAEKR ddPTM_HeLa_CUDC101_4h_R1 2 FNADEFEDMVAEKR 14 1 X1WI28;P27635;F8W7C6;A0A087WV22 X1WI28 RPL10 60S ribosomal protein L10 0 0 ; ; 125.33 0.0011926 20723300 2947.2 2750.2 2739 3088.4 3669 3466.1 2743.24 2829.06 2952.1 2491.41 FALSE FALSE TRUE 2601.733684 2834.930402 2887.078625 3214.358301 3398.34518 3399.989917 2849.047686 3151.108755 2830.413188 2476.590983 1.050530226 1.144690594 1.165747047 1.297896311 1.372186689 1.372850802 1.150390882 1.272357356 1.142866629 1 11.27413991 -6.838641514 1.222561058 1.019179544 1.293643867 0.633327308 0.073304989 0.144976962 0.431772829 0.012284538 0.017794477 1.45E-07 6.838641514 0.274464323 FNAHGDANTIVCNSK ddPTM_HeLa_CUDC101_4h_R1 2 FNAHGDANTIVCNSK 15 0 P09382 P09382 LGALS1 Galectin-1 0 0 ; ; 152.11 0.00088079 30475200 5298.7 4222.7 4289.8 4268.1 4761.8 4608.1 3985.8 4012.3 4433.8 2042.23 FALSE FALSE TRUE 4677.594418 4352.796382 4521.719564 4442.171566 4410.531501 4520.20817 4139.533641 4469.044014 4251.036887 2030.082725 2.304139807 2.144147294 2.227357293 2.188172684 2.17258708 2.226612795 2.039096038 2.201409804 2.094021507 1 10.9873228 -9.246559798 0.778300983 0.924947201 2.194765897 0.102447541 0.341159686 0.097837816 0.096710007 0.078537903 0.017290005 5.67E-10 9.246559798 1.269818696 FNDEHIPDSPFVVPVASLSDDAR ddPTM_HeLa_CUDC101_4h_R1 2 FNDEHIPDSPFVVPVASLSDDAR 23 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 0 0 ; ; 150.14 1.61E-07 17993800 4509.5 4196 3869.2 3583.9 4211.8 4271.4 4210 3951 4338.3 4547.4 FALSE FALSE TRUE 3980.903246 4325.273787 4078.380656 3730.066933 3901.103905 4189.930162 4372.38111 4400.76587 4159.473438 4520.351863 0.880662251 0.956844493 0.902226371 0.825171811 0.863008904 0.926903544 0.967265656 0.973544981 0.920165855 1 12.14221936 -9.412237969 1.035123079 1.00223238 0.908363004 0.036480582 0.050990847 0.532267093 0.980266046 0.037997794 0.008737152 3.87E-10 9.412237969 -0.093869376 FNDEHIPESPYLVPVIAPSDDAR ddPTM_HeLa_CUDC101_4h_R1 2 FNDEHIPESPYLVPVIAPSDDAR 23 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7 O75369-8 FLNB Filamin-B 0 0 ; ; 155.17 1.24E-07 57459000 7113.9 6128.7 6584.4 6030.2 6714.3 6508.3 5889.2 6157.3 6727.8 6983.7 FALSE FALSE TRUE 6280.019426 6317.517983 6940.372581 6276.137621 6218.999466 6384.165021 6116.348417 6858.222143 6450.477236 6942.160642 0.904620298 0.910021866 0.999742434 0.904061134 0.895830533 0.919622197 0.881043919 0.98790888 0.929174297 1 12.76116903 -9.36268613 0.948765741 1.002749731 0.922573284 0.014941785 0.042577706 0.499440777 0.759874484 0.028790406 0.006528818 4.34E-10 9.36268613 -0.080176447 FNDEHIPESPYLVPVIAPSDDARR ddPTM_HeLa_CUDC101_4h_R1 1 FNDEHIPESPYLVPVIAPSDDARR 24 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7 O75369-8 FLNB Filamin-B 0 0 75.773 0.00028467 3902500 657.54 799.73 680.46 625.86 901.84 826.34 724.54 928.4 768.93 558.62 FALSE FALSE TRUE 580.464158 824.3687334 717.2477259 651.385276 835.3130599 810.5789413 752.4857505 1034.085303 737.2343799 555.2973034 1.045321406 1.484553821 1.291646333 1.173038788 1.50426277 1.459720651 1.355104276 1.862219206 1.327639042 1 9.11711658 -1 0.164927187 0.891512631 4.147120246 0.413645623 0.182316875 23.85040834 0.245934769 0.238674504 19.10405685 0.1 1 3.255607615 FNDFDHR ddPTM_HeLa_CUDC101_4h_R1 4 FNDFDHR 7 0 Q9NWH9;Q9NWH9-3;H7C3F4;H0YMM0 Q9NWH9 SLTM SAFB-like transcription modulator 0 0 ;;; ;;; 133.58 0.0097539 34864700 19721.8 18012 18669.2 18569.7 17825.8 17414 17455.6 16815.6 16494.5 18726.3 FALSE FALSE TRUE 17410.0405 18566.92837 19678.51342 19327.05263 16510.82625 17081.85696 18128.86834 18729.81993 15814.58973 18614.91513 0.935273697 0.997422134 1.057136886 1.038256285 0.886967581 0.917643558 0.97388939 1.006172727 0.849565502 1 14.18417142 -4.265403327 7.297414806 0.972422578 1.006556014 0.018723772 0.062987571 0.329191044 155.6748793 0.007429019 0.056302705 5.43E-05 4.265403327 0.034133436 FNDGSDEK(ac)KK ddPTM_HeLa_CUDC101_4h_R1 1 FNDGSDEKKK 10 2 P25705;P25705-2;P25705-3;K7EK77;K7ENJ4 P25705 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 1 FNDGSDEK(0.685)K(0.315)K 89.561 0.035677 1624100 1801.6 1580.9 1408.1 1650.4 1530 1447.3 1294 1277.1 1284.8 1539.6 FALSE TRUE FALSE 1590.419179 1629.605655 1484.226145 1717.710446 1417.134948 1419.695164 1343.910013 1422.479902 1231.84 1530.442391 1.039189184 1.064793856 0.969802035 1.122362041 0.925964255 0.927637115 0.878118655 0.929456679 0.804891453 1 10.57973302 -5.591799597 12.10192346 1.025223954 0.911441611 0.173506407 0.080714541 0.298604002 51.52361059 0.00558746 0.01117694 2.56E-06 5.591799597 -0.113782343 SLSGS(ph)SPCPK ddPTM_HeLa_CUDC101_4h_R1 3 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SLS(0.001)GS(0.499)S(0.499)PCPK;SLSGS(0.5)S(0.5)PCPK;SLSGS(0.936)S(0.063)PCPK ;; 203.03 2.82E-17 707950000 18442.5 15869.5 15270 14045.9 14333.3 12056.6 8949.2 5561.5 16801.9 15446.5 TRUE FALSE FALSE 16280.69811 16358.42049 16095.54239 14618.75251 13275.96101 11826.64044 9294.373642 6194.59868 16109.31857 15354.62353 1.060312425 1.065374247 1.048253795 0.952074955 0.864623023 0.770233176 0.605314329 0.4034354 1.049150996 1 13.90638552 -4.595259012 0.754665145 1.035290227 0.198035831 0.983196479 0.027747999 0.194270682 0.103851433 0.005947512 0.123942571 2.54E-05 4.595259012 -0.837254397 down S(ph)PVEGLGR ddPTM_HeLa_CUDC101_4h_R1 2 SPVEGLGR 8 0 Q9Y5U2-2;Q9Y5U2;A6NCC9;E9PME3;C9JHT9;C9JJV1 Q9Y5U2-2 TSSC4 Protein TSSC4 1 0 S(1)PVEGLGR;S(1)PVEGLGR ; 112.3 0.010545 66386000 2330.37 1695.26 1919.13 2126.93 1940.66 1885.43 1926.38 1674.55 2201.22 2286.65 TRUE FALSE FALSE 2057.207561 1747.488951 2022.883973 2213.675399 1797.501378 1849.468564 2000.681122 1865.174003 2110.48478 2273.048904 0.905043247 0.768786342 0.889943005 0.973879354 0.790788696 0.813651022 0.880175133 0.820560438 0.928481906 1 11.15041301 -8.421616425 0.488474171 1.010197282 0.844398034 0.319685264 0.060874224 0.643434072 0.323243171 0.047528026 0.01897272 3.79E-09 8.421616425 -0.165799248 DWEDDS(ph)DEDMSNFDR ddPTM_HeLa_CUDC101_4h_R1 19 DWEDDSDEDMSNFDR 15 0 B4DDC6;A0A087WYT3;Q15185-2;Q15185-4;Q15185 B4DDC6 PTGES3 Prostaglandin E synthase 3 1 0 DWEDDS(1)DEDMSNFDR;DWEDDS(0.919)DEDMS(0.081)NFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(0.997)DEDMS(0.003)NFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(0.996)DEDMS(0.004)NFDR;DWEDDS(0.998)DEDMS(0.002)NFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(0.998)DEDMS(0.002)NFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(0.998)DEDMS(0.002)NFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(0.997)DEDMS(0.003)NFDR;DWEDDS(1)DEDMSNFDR ;;;;;;;;;;;;;;;;;; 321.81 2.53E-166 8640285000 31924.61 27713.13 23581.47 23260.02 25346.87 24997.79 23330.59 20538.61 28832.15 35841.1 TRUE FALSE FALSE 28182.45561 28566.93869 24856.3556 24208.66415 23477.0819 24520.9988 24230.45867 22876.64234 27643.67657 35627.91554 0.791021736 0.80181336 0.697665166 0.679485841 0.658951879 0.688252412 0.680097567 0.642098815 0.775899352 1 15.12072046 -8.419264421 0.29904733 1.078421374 0.63101743 0.490965448 0.072466313 0.288534107 0.057447757 0.049046303 0.018924607 3.81E-09 8.419264421 -0.447403944 S(ph)PSEARQDVDLCLVSSCEYK ddPTM_HeLa_CUDC101_4h_R1 2 SPSEARQDVDLCLVSSCEYK 20 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.877)PS(0.123)EARQDVDLCLVSSCEYK;S(0.623)PS(0.377)EARQDVDLCLVSSCEYK ; 102.21 0.00016404 29093000 3264.2 3586.9 3413.2 3498.9 4346.5 4164.7 3813 4233.9 3626.6 1100.94 TRUE FALSE FALSE 2881.575424 3697.408137 3597.727916 3641.600266 4025.867354 4085.265286 3960.068687 4715.870062 3477.110013 1094.39156 2.633038786 3.378505713 3.287422937 3.327511285 3.678635236 3.732910081 3.618511721 4.309125029 3.17720836 1 10.09591329 -8.417782613 0.27115313 0.166279176 4.206778732 0.300076314 0.706633914 0.308603703 0.05215263 0.456843766 0.181782726 3.82E-09 8.417782613 4.040499556 S(ph)IVVIHPDTGR ddPTM_HeLa_CUDC101_4h_R1 2 SIVVIHPDTGR 11 0 O60437;K7EKI8;K7EQ71 O60437 PPL Periplakin 1 0 S(1)IVVIHPDTGR;S(1)IVVIHPDTGR ; 104.9 0.005813 20802000 6379.8 6024 5310.7 6035.8 6780.9 6517.9 5770.6 4179.7 5304.9 4871.8 TRUE FALSE FALSE 5631.969515 6209.5923 5597.812506 6281.966013 6280.686516 6393.581917 5993.173975 4655.500153 5086.229777 4842.822317 1.162951921 1.28222592 1.1558988 1.297170452 1.296906247 1.320218149 1.237537449 0.961319629 1.050261489 1 12.24163236 -8.41607312 0.691267728 1.008709169 1.230993514 0.357479227 0.100952631 0.464653515 0.468506454 0.048948006 0.023983904 3.84E-09 8.41607312 0.222284345 SESGGLGVSMVEYVLSSS(ph)PADKLDSR ddPTM_HeLa_CUDC101_4h_R1 1 SESGGLGVSMVEYVLSSSPADKLDSR 26 1 C9JW01;Q8TB72-2;Q8TB72-3;Q8TB72;A0A0A0MR59;Q8TB72-4 C9JW01 PUM2 Pumilio homolog 2 1 0 SESGGLGVS(0.003)MVEY(0.009)VLS(0.044)S(0.287)S(0.65)PADKLDS(0.006)R 60.517 0.015003 6120300 875.8 707.41 841.86 833.85 962.96 949.14 660.3 698.96 909.11 623.55 TRUE FALSE FALSE 773.1400516 729.2044636 887.3734981 867.8580072 891.9243593 931.0367359 685.7679922 778.5267811 871.636101 619.8410969 1.247319766 1.176437747 1.431614494 1.400129826 1.438956474 1.502057125 1.106360962 1.256010266 1.406225088 1 9.275754602 -8.415024484 0.55523606 0.998552988 1.347609055 0 0.167898543 0.50973531 0.332065774 0.081452816 0.034864018 3.85E-09 8.415024484 0.349056067 FNDSEGDDTEETEDYR ddPTM_HeLa_CUDC101_4h_R1 1 FNDSEGDDTEETEDYR 16 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 0 0 163.62 0.00020174 22357000 1313.7 1179.9 1320.1 1362.2 1287.9 1059.7 977.73 611.41 1600.3 890.88 FALSE FALSE TRUE 1159.710077 1216.25132 1391.468599 1417.756404 1192.894183 1039.487988 1015.441374 681.010443 1534.334957 885.5810061 1.309547144 1.373393639 1.571249371 1.600933618 1.347018708 1.173792099 1.14663861 0.768998475 1.732574373 1 9.790480469 -3.14490141 12.78606536 1.21455675 1.188329524 0 0.291116622 0 0 0.035707923 0 0.000716306 3.14490141 -0.026227225 GVTIPYRPKPS(ph)SSPVIFAGGQLTK ddPTM_HeLa_CUDC101_4h_R1 1 GVTIPYRPKPSSSPVIFAGGQLTK 24 2 H3BRU6;F8VZX2 H3BRU6 PCBP2 1 0 GVT(0.004)IPY(0.184)RPKPS(0.271)S(0.271)S(0.271)PVIFAGGQLTK 70.121 0.00065305 12408000 652.27 590.57 621.51 590.21 607.07 647.07 669.63 422.31 490.09 494.37 TRUE FALSE FALSE 575.8118994 608.7647617 655.1107106 614.2813149 562.2876556 634.7282178 695.4578534 470.3840634 469.8882828 491.4294653 1.171708129 1.23876325 1.333071696 1.249988774 1.144187916 1.291595769 1.415173291 0.957175132 0.956166278 1 8.940840552 -8.414535204 0.690661605 1.009230138 1.243032916 0.405181161 0.117692206 0.485369753 0.488712223 0.053747177 0.026356511 3.85E-09 8.414535204 0.233802778 LRCDS(ph)ADLR ddPTM_HeLa_CUDC101_4h_R1 1 LRCDSADLR 9 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 LRCDS(1)ADLR 120.86 0.027451 39465000 3320.2 3151.6 3293.3 3180 3232.6 3003.7 2453.1 2903.6 2936.3 2519.9 TRUE FALSE FALSE 2931.011189 3248.69706 3471.34576 3309.694145 2994.137538 2946.409427 2547.716889 3234.134087 2815.264471 2504.911523 1.170105675 1.296930862 1.385815718 1.321281856 1.195306705 1.176252894 1.017088574 1.291117095 1.123897769 1 11.29054393 -8.413131637 0.92728538 1.02157651 1.23176729 0.292571807 0.102188896 0.36952676 0.659024449 0.038137972 0.022484915 3.86E-09 8.413131637 0.210190779 FNEEHIPDSPFVVPVASPSGDAR ddPTM_HeLa_CUDC101_4h_R1 2 FNEEHIPDSPFVVPVASPSGDAR 23 0 P21333-2;P21333;Q60FE5;A0A087WWY3;H0Y5C6 P21333-2 FLNA Filamin-A 0 0 ; ; 100.08 7.51E-05 50963000 3915.1 3272.8 3023.5 3351.4 4122.2 3774.8 3322.3 3383.3 3676 4215.2 FALSE FALSE TRUE 3456.177913 3373.631089 3186.959556 3488.084578 3818.113519 3702.801979 3450.442224 3768.441196 3524.473724 4190.127803 0.824838305 0.805137993 0.760587673 0.832453028 0.911216483 0.883696668 0.823469447 0.899361875 0.841137524 1 12.03277853 -9.183577517 0.918488644 1.000437847 0.841378188 0 0.064518184 0.30362039 0.459295962 0.031956509 0.008968704 6.55E-10 9.183577517 -0.159059659 LEDEDEDLGAPPGEEYGDGS(ph)PSREDSMVPPK ddPTM_HeLa_CUDC101_4h_R1 1 LEDEDEDLGAPPGEEYGDGSPSREDSMVPPK 31 1 A0A494BZV2;H0Y2S9 A0A494BZV2 MPRIP 1 0 LEDEDEDLGAPPGEEY(0.133)GDGS(0.607)PS(0.148)REDS(0.113)MVPPK 58.858 0.0008979 4249900 924.04 1156.7 832.71 741.35 852.05 973.57 707.08 802.7 1300.6 650.97 TRUE FALSE FALSE 815.725432 1192.336556 877.7288214 771.5854574 789.195969 955.0007743 734.3523125 894.0761234 1246.988718 647.0980015 1.260590251 1.842590385 1.356407869 1.192378057 1.219592654 1.47582093 1.134839407 1.381670352 1.927047703 1 9.337840411 -8.412053215 1.135124886 1.042092784 1.353866751 0 0.33778103 0.37729818 0.991396498 0.059867781 0.038945788 3.87E-09 8.412053215 0.311773967 CSSSSGGGS(ph)S(ph)GDEDGLELDGAPGGGKR ddPTM_HeLa_CUDC101_4h_R1 1 CSSSSGGGSSGDEDGLELDGAPGGGKR 27 1 Q9P258 Q9P258 RCC2 Protein RCC2 2 0 CS(0.322)S(0.296)S(0.201)S(0.199)GGGS(0.482)S(0.5)GDEDGLELDGAPGGGKR 46.878 0.022514 6629300 2215.5 1715.1 1518.7 1591.8 2113.5 1898.6 1480.8 1515.7 1965.2 2467.6 TRUE FALSE FALSE 1955.802448 1767.940198 1600.805516 1656.720484 1957.591316 1862.387368 1537.914952 1688.241161 1884.193624 2452.922605 0.797335572 0.720748463 0.652611506 0.67540675 0.798064852 0.759252397 0.626972473 0.688257003 0.768142305 1 11.260286 -8.412014294 0.526600844 1.009564136 0.692960246 0.289572135 0.085250873 0.27488166 0.161173946 0.039387922 0.016440886 3.87E-09 8.412014294 -0.31660389 YADSPGAS(ph)SPEQPKR ddPTM_HeLa_CUDC101_4h_R1 2 YADSPGASSPEQPKR 15 1 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 0 YADSPGAS(0.5)S(0.5)PEQPKR;YADSPGAS(0.708)S(0.292)PEQPKR ; 136.35 0.00028276 27709000 5036.2 3787.4 4430.4 4156.4 4162 4157.8 3982.5 4236.8 4790.6 4936.1 TRUE FALSE FALSE 4445.86427 3904.085305 4669.920825 4325.915957 3854.977552 4078.496892 4136.106359 4719.100186 4593.12944 4906.739858 0.906072953 0.795657691 0.951735971 0.88162733 0.785649467 0.831203 0.842943885 0.96175879 0.936085787 1 12.26054907 -8.410365228 0.590930702 1.000465878 0.859000523 0.29202212 0.058880113 0.515038294 0.380745532 0.033694598 0.015021091 3.89E-09 8.410365228 -0.141465355 LDYVPSSAS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 LDYVPSSASR 10 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 LDYVPSSAS(1)R;LDYVPSS(0.002)AS(0.997)R ; 116.84 0.0058105 104247000 6461.1 5243.4 4819.5 4984.2 5318.9 4977.9 4545.3 6619 6174.1 6773.6 TRUE FALSE FALSE 5703.739652 5404.942939 5080.056748 5187.47722 4926.535344 4882.954851 4720.613744 7372.480205 5919.600985 6733.310326 0.847092942 0.802717041 0.754466451 0.770420041 0.731666165 0.725193792 0.701083645 1.094926544 0.879151665 1 12.71710024 -8.408793999 0.664182234 0.992931479 0.784396766 0.168922876 0.111302439 0.53124468 0.495796346 0.052109674 0.025039322 3.90E-09 8.408793999 -0.208534713 DFT(ph)MPK ddPTM_HeLa_CUDC101_4h_R1 1 DFTMPK 6 0 P0DTE5-2;P0DTE5 P0DTE5-2 1 0 DFT(1)MPK 54.586 0.032757 1165800 353.99 312.71 248.24 217.54 346.67 305.46 199.61 296.73 356.92 396.45 TRUE FALSE FALSE 312.4958288 322.3442244 261.6606053 226.4122215 321.0968448 299.6338594 207.3090246 330.5085438 342.2076065 394.0918978 0.792951671 0.81794177 0.663958348 0.574516306 0.81477657 0.760314691 0.526042341 0.838658561 0.868344689 1 8.622388279 -8.408533011 0.45830307 1.019656506 0.687288374 0.400176596 0.104196872 0.581936462 0.258915155 0.084614444 0.033419846 3.90E-09 8.408533011 -0.332368132 FNHDGEEEEEDDDYGSR ddPTM_HeLa_CUDC101_4h_R1 2 FNHDGEEEEEDDDYGSR 17 0 H0YJA2;Q6PJT7-5;Q6PJT7-2;Q6PJT7;Q6PJT7-9;G3V5I6;G3V256;Q6PJT7-10;Q6PJT7-4;Q6PJT7-3;Q6PJT7-11 H0YJA2 ZC3H14 Zinc finger CCCH domain-containing protein 14 0 0 ; ; 236.78 1.35E-43 54321000 4587 4202.3 4014.5 4417.3 5151.4 4310.1 3845.6 4279.9 4460.1 4884.4 FALSE FALSE TRUE 4049.318813 4331.767882 4231.536013 4597.456587 4771.391485 4227.892024 3993.92608 4767.106516 4276.25279 4855.347372 0.833991577 0.89216436 0.871520756 0.946885204 0.982708573 0.870770246 0.822582974 0.981826047 0.880730556 1 12.2453588 -9.552297899 1.336991881 0.999695933 0.891499749 0 0.064366539 0.397697902 1.279378961 0.038468837 0.009207986 2.80E-10 9.552297899 -0.108196184 FNHWELK ddPTM_HeLa_CUDC101_4h_R1 1 FNHWELK 7 0 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 0 0 149.4 0.0072727 15741000 12492 10398 10707 10691 11647 10794 9777.5 9854.1 9709.7 10226 FALSE FALSE TRUE 11027.7067 10718.35006 11285.85281 11127.02519 10787.82401 10588.12243 10154.62145 10975.85091 9309.462056 10165.1753 1.084851601 1.054418615 1.110246747 1.094622067 1.061253121 1.041607461 0.998961764 1.079750284 0.915819136 1 13.31134747 -3.903872024 20.10690531 1.049218032 3.696716184 0.022005815 0.05479869 1504.778607 319641.3805 0.005909278 2831.944551 0.000124775 3.903872024 2.647498152 FNLTYVSHDGDDK ddPTM_HeLa_CUDC101_4h_R1 2 FNLTYVSHDGDDK 13 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 ; ; 173.33 3.20E-07 159651000 11633.8 9022.7 9325.2 8893.1 8905.8 9003.2 8383.8 8370.5 7347.5 9151.2 FALSE FALSE TRUE 10270.1036 9300.678692 9829.348519 9255.799057 8248.836877 8831.47896 8707.165974 9323.363885 7044.63294 9096.768255 1.128983757 1.022415701 1.080531926 1.017482121 0.906787624 0.970836973 0.957171352 1.024909465 0.77441051 1 13.15113838 -5.989002243 8.22248206 1.059838688 0.964326395 0 0.099366101 0.113394984 53.38845607 0.0080402 0.014366221 1.03E-06 5.989002243 -0.095512293 FNRDVDETISWIK ddPTM_HeLa_CUDC101_4h_R1 2 FNRDVDETISWIK 13 1 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 119.87 0.0027829 16936400 5230.3 5054.2 4969.8 4995.2 4956.3 4912.4 4391.8 5860.8 5165.8 5220.1 FALSE FALSE TRUE 4617.212163 5209.913911 5238.482421 5198.925847 4590.683623 4818.704155 4561.193197 6527.969782 4952.863538 5189.050613 0.889799022 1.004020639 1.009526176 1.001903091 0.884686615 0.928629245 0.879003413 1.258027772 0.954483567 1 12.34125489 -4.253319085 24.86857747 0.949474261 1.258027936 0.772793221 0.050067457 386.3109251 1183056.337 0.007971685 0.117852086 5.58E-05 4.253319085 0.308553674 FNVPVSLESK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 FNVPVSLESKK 11 1 F8VZQ9;P82979;H0YHG0 F8VZQ9 SARNP SAP domain-containing ribonucleoprotein 0 1 ; FNVPVSLESK(1)K;FNVPVSLESK(1)K 188.28 8.61E-06 831900 2587.24 1496.78 862.16 2044.64 1909.43 1799.71 1982.44 1701.77 847.41 479.24 FALSE TRUE FALSE 2283.967649 1542.894018 908.7709775 2128.029257 1768.575153 1765.38353 2058.903375 1895.492618 812.4794011 476.3894592 4.794328685 3.23872409 1.907621926 4.466994842 3.712456518 3.70575691 4.321891123 3.97887187 1.705494077 1 8.895997682 -6.247247139 24.72170978 2.817629038 4.016556587 0.346347856 0.996996157 1096.35173 1909753.293 0.218908384 0.361871425 5.66E-07 6.247247139 1.198927548 EEAPASPLRPLYPQIS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 1 EEAPASPLRPLYPQISPLK 19 1 P85037-2;P85037;U3KQ26 P85037-2;U3KQ26 FOXK1 Forkhead box protein K1 1 0 EEAPAS(0.023)PLRPLY(0.006)PQIS(0.971)PLK 81.379 0.0032856 69337000 1547.9 1339.3 1203.9 943.48 1084.6 1471.7 1137.9 1426.2 1244.8 1693.7 TRUE FALSE FALSE 1366.457508 1380.562246 1268.986476 981.9591925 1004.591219 1443.629775 1181.789184 1588.552843 1193.488817 1683.625797 0.811615925 0.819993521 0.753722399 0.583240762 0.596683194 0.857452872 0.701931027 0.943530828 0.708880096 1 10.71735581 -8.40815696 0.607729168 0.995379911 0.736763736 0 0.135363497 0.512174819 0.400702779 0.061499388 0.027947699 3.91E-09 8.40815696 -0.258616175 S(ph)RS(ph)PT(ph)PPSSAGLGSNSAPPIPDSR ddPTM_HeLa_CUDC101_4h_R1 3 SRSPTPPSSAGLGSNSAPPIPDSR 24 1 J3QK89;Q8IWX8 J3QK89 CHERP Calcium homeostasis endoplasmic reticulum protein 3 0 S(0.943)RS(0.938)PT(0.898)PPS(0.113)S(0.105)AGLGS(0.002)NSAPPIPDSR;S(0.997)RS(0.997)PT(0.996)PPS(0.009)S(0.002)AGLGSNSAPPIPDSR;S(0.987)RS(0.972)PT(0.991)PPS(0.036)S(0.014)AGLGSNSAPPIPDSR ;; 85.913 0.0002609 40073000 4851.59 3744.52 3796.29 3827.53 4635.49 4089.89 3726.38 3736.02 4493.78 4884.5 TRUE FALSE FALSE 4282.893975 3859.884223 4001.528921 3983.633217 4293.539138 4011.882162 3870.107725 4161.313415 4308.544486 4855.446777 0.882080305 0.79495964 0.824131971 0.820446274 0.884272722 0.826264265 0.797065214 0.85704027 0.887363138 1 12.24538834 -8.407542312 0.653661365 0.996104804 0.827808822 0.446668486 0.043082927 0.199951909 0.180856828 0.015788702 0.00751739 3.91E-09 8.407542312 -0.168295982 IEEIKTPDS(ph)FEESQGEEIGK ddPTM_HeLa_CUDC101_4h_R1 1 IEEIKTPDSFEESQGEEIGK 20 1 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 IEEIKT(0.007)PDS(0.986)FEES(0.007)QGEEIGK 61.522 0.012671 5489500 772.83 789 735.33 771.96 816.83 857.75 688.74 651.28 659.91 468.35 TRUE FALSE FALSE 682.2400389 813.3081548 775.0841641 803.4438655 756.5740783 841.3898479 715.3049325 725.4190826 632.7082305 465.5642334 1.46540475 1.746930061 1.664827554 1.725742245 1.625069161 1.80724761 1.53642587 1.55815037 1.359013827 1 8.862836418 -8.406307223 0.644520783 1.014635626 1.674703895 0.628922267 0.136353438 0.171267661 0.150692616 0.052918608 0.024997604 3.92E-09 8.406307223 0.660068269 FPEDLENDIR ddPTM_HeLa_CUDC101_4h_R1 1 FPEDLENDIR 10 0 O14929;F8W9G7 O14929 HAT1 Histone acetyltransferase type B catalytic subunit 0 0 119.75 0.0014665 0 626.39 434.59 456.31 402.24 583.94 393.51 474.53 526.31 381.26 561.32 FALSE FALSE TRUE 552.9655137 447.9792028 480.9794989 418.6450858 540.8639096 386.0044524 492.8327811 586.223003 365.5443014 557.9812437 0.991010935 0.802857099 0.861999403 0.75028523 0.969322743 0.691787505 0.883242558 1.050614173 0.655119335 1 9.124072817 -7.277236431 22.49990415 0.99575519 0.853344761 0 0.144457339 177.0329165 252149.029 0.015406956 0.01766235 5.28E-08 7.277236431 -0.142410429 KHSEEAEFTPPLKCS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 KHSEEAEFTPPLKCSPK 17 2 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 0 KHSEEAEFT(0.023)PPLKCS(0.977)PK 60.918 0.019803 63683000 3302.4 3000.3 3087.3 2855.9 3406.2 2790.6 2799.8 3013 3241.9 2601.7 TRUE FALSE FALSE 2915.297678 3092.735687 3254.208777 2972.375946 3154.931412 2737.373954 2907.789224 3355.987741 3108.26751 2586.224973 1.127240557 1.195849441 1.258285266 1.149310666 1.219898286 1.058443864 1.124337308 1.297639523 1.201855037 1 11.33663206 -8.405353417 0.731148572 1.008878831 1.180635989 0 0.088458367 0.368072924 0.415226238 0.030058033 0.015422721 3.93E-09 8.405353417 0.171757158 FPFSKDEDCLEQQMPSLRESPMTLK ddPTM_HeLa_CUDC101_4h_R1 1 FPFSKDEDCLEQQMPSLRESPMTLK 25 2 G3V419;Q9UHC1-2;Q9UHC1 G3V419 MLH3 DNA mismatch repair protein Mlh3 0 0 46.578 0.029427 8315900 1740.3 1245.5 1407.8 1678.5 1335.4 1280.6 1104 1568.8 1610.6 1567.6 FALSE FALSE TRUE 1536.304672 1283.872379 1483.909926 1746.956485 1236.890202 1256.174689 1146.58165 1747.385851 1544.210386 1558.275845 0.985900331 0.823905718 0.952276794 1.121082952 0.793755615 0.806131143 0.735801465 1.121358491 0.990973704 1 10.60573493 -6.71142602 0.534137582 0.999719652 0.874074184 0.058226912 0.125839894 1.410024828 0.854511047 0.037121663 0.069984594 1.94E-07 6.71142602 -0.125645468 FPHHDNELAQSEAYFENDCWVR ddPTM_HeLa_CUDC101_4h_R1 1 FPHHDNELAQSEAYFENDCWVR 22 0 B4DKY1;P49589-2;P49589;P49589-3 B4DKY1 CARS "Cysteine--tRNA ligase, cytoplasmic" 0 0 70.555 0.0024882 2701600 383.58 503.91 402.51 381.91 579.7 442.37 352.14 416.14 611.99 341.8 FALSE FALSE TRUE 338.6173339 519.4348698 424.2709081 397.4859406 536.9366859 433.9325293 365.7221578 463.5116955 586.7635132 339.7669584 0.996616432 1.52879748 1.2487115 1.16987815 1.580308716 1.277147523 1.076391181 1.364204741 1.726958725 1 8.40840175 -7.29225306 23.92665436 0.998402152 1.311105951 0 0.270843536 225.0459883 174746.3304 0.023522909 0.026901475 5.10E-08 7.29225306 0.312703799 LKSPSMAVPS(ph)PGWVASPK ddPTM_HeLa_CUDC101_4h_R1 1 LKSPSMAVPSPGWVASPK 18 1 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 LKS(0.357)PS(0.269)MAVPS(0.375)PGWVASPK 73.672 0.0087327 25180000 5984.1 4484.4 4562 5013.4 5405.2 4712.6 4870.8 3826.2 5522 5839.9 TRUE FALSE FALSE 5282.652869 4622.559049 4808.635519 5217.868122 5006.469165 4622.715007 5058.668388 4261.759142 5294.380823 5805.164015 0.90999201 0.79628397 0.828337581 0.898832162 0.862416488 0.796310835 0.871408349 0.734132426 0.912012272 1 12.50312111 -8.403224293 0.226828287 1.076817669 0.778029918 0.442913676 0.053511042 1.58401053 0.204085336 0.162837881 0.070517074 3.95E-09 8.403224293 -0.29878775 FPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG ddPTM_HeLa_CUDC101_4h_R1 2 FPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG 34 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 129.93 2.81E-19 33640000 6906.9 6061.6 5687.4 5740.7 6891.1 5932 5888.3 5691.6 6447.2 6161.7 FALSE FALSE TRUE 6097.283652 6248.350711 5994.878047 5974.830559 6382.757282 5818.856983 6115.413703 6339.508738 6181.443687 6125.049934 0.995466766 1.020130575 0.97874762 0.975474588 1.042074326 0.950009722 0.998426751 1.035013397 1.009207068 1 12.58050589 -9.808765702 1.819312567 1.000010095 0.997804862 0 0.026610694 7.111925489 42.48902166 0.018320933 0.003769778 1.55E-10 9.808765702 -0.002205233 ISYT(ph)PPESPVPSYASSTPLHVPVPR ddPTM_HeLa_CUDC101_4h_R1 1 ISYTPPESPVPSYASSTPLHVPVPR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 1 0 IS(0.005)Y(0.113)T(0.87)PPES(0.012)PVPSYASSTPLHVPVPR 121.33 1.05E-09 16617000 1238.2 817.5 820.69 711.82 1345.7 1158.9 1015.5 1053.8 1386.6 1319.4 TRUE FALSE FALSE 1093.060073 842.686206 865.0589839 740.8510963 1246.430392 1136.795913 1054.668175 1173.760332 1329.443761 1311.55215 0.833409539 0.642510636 0.659568881 0.564865908 0.950347565 0.866756166 0.80413743 0.894939887 1.013641555 1 10.35705946 -8.401832087 1.020040105 0.975613058 0.773043732 0.37602978 0.116459735 0.406904791 0.871834577 0.040928188 0.025550308 3.96E-09 8.401832087 -0.202569326 FQDGDLTLYQSNTILR ddPTM_HeLa_CUDC101_4h_R1 1 FQDGDLTLYQSNTILR 16 0 P09211;A8MX94;A0A087X2E9 P09211 GSTP1 Glutathione S-transferase P 0 0 227.92 3.00E-32 30233000 1675.1 1477.9 1460.9 1664.8 1821.8 1418.6 1328.4 1503.4 1616.9 1596.8 FALSE FALSE TRUE 1478.747317 1523.432347 1539.880673 1732.69774 1687.409444 1391.542569 1379.636833 1674.540979 1550.250698 1587.302163 0.931610472 0.959762031 0.970124472 1.09159918 1.063067564 0.8766715 0.86917089 1.054960434 0.976657586 1 10.63236107 -5.238770053 24.72678724 0.981617968 0.927157953 0.131697183 0.066669186 1256.13017 1370133.161 0.009873216 0.025147726 5.77E-06 5.238770053 -0.054460015 AAESETPGKS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 2 AAESETPGKSPEK 13 1 J3QSV6;O76021-2;O76021 J3QSV6 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AAESET(0.001)PGKS(0.999)PEK;AAES(0.096)ET(0.094)PGKS(0.81)PEK ; 188.19 1.77E-10 175184000 9043.4 6298.2 7436.2 6519.2 5900.2 5311.7 4647.3 2848.2 7176.3 9072.6 TRUE FALSE FALSE 7983.346361 6492.240077 7838.223465 6785.081154 5464.954001 5210.388172 4826.547918 3172.427575 6880.489877 9018.635772 0.885205541 0.719869417 0.869114095 0.75234008 0.60596238 0.577735736 0.535174947 0.351763577 0.762919143 1 13.1386935 -4.586732148 0.278985075 1.005008876 5.97E-22 0.767287628 0.087879458 1.222353784 0.083525682 0.029853585 0.412852495 2.59E-05 4.586732148 -1.005008876 down VSIGNITLS(ph)PAISR ddPTM_HeLa_CUDC101_4h_R1 2 VSIGNITLSPAISR 14 0 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 VSIGNITLS(0.998)PAIS(0.002)R;VSIGNITLS(1)PAISR ; 179.97 3.90E-08 135864000 3488 2963.1 2565.2 2840 2634.3 2700.2 3069.7 3502 2511.1 3444 TRUE FALSE FALSE 3079.141927 3054.389599 2703.882471 2955.827476 2439.972937 2648.698184 3188.099357 3900.653524 2407.591395 3423.514935 0.899409521 0.892179429 0.789797189 0.863389683 0.712709886 0.773677999 0.931235709 1.139370968 0.703251319 1 11.74126259 -8.401041677 0.772564264 0.990727428 0.862551293 0 0.141293276 0.783132123 0.98422853 0.047958505 0.025586983 3.97E-09 8.401041677 -0.128176135 LMHNAS(ph)DSEVDQDDVVEWK ddPTM_HeLa_CUDC101_4h_R1 4 LMHNASDSEVDQDDVVEWK 19 0 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 LMHNAS(0.969)DS(0.031)EVDQDDVVEWK;LMHNAS(0.995)DS(0.005)EVDQDDVVEWK;LMHNAS(0.655)DS(0.345)EVDQDDVVEWK;LMHNAS(0.5)DS(0.5)EVDQDDVVEWK ;;; 173.81 6.55E-07 123200000 12427.3 10691.3 9348.9 9356.3 9753.1 9072.7 7789.2 6313.3 13556.4 14513 TRUE FALSE FALSE 10970.59073 11020.68628 9854.329813 9737.890355 9033.633244 8899.653364 8089.632053 7031.980553 12997.59945 14426.67603 0.760437866 0.763910291 0.683063083 0.674991962 0.62617565 0.616888696 0.560741229 0.48742902 0.900942076 1 13.81645131 -8.398035217 0.077572933 1.6747229 8.08E-13 0.94278185 0.035107329 2.421018441 0.083078761 1.03783016 0.727539515 4.00E-09 8.398035217 -1.6747229 FQFDGDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 FQFDGDKK 8 1 P52209-2;P52209;K7ELN9 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 1 ; FQFDGDK(1)K;FQFDGDK(1)K 115.71 0.0027266 10541100 14531.4 5483.4 5387.3 4859.3 13234.5 11618.6 13414 10407.8 12015.1 8894.1 FALSE TRUE FALSE 12828.05132 5652.337055 5678.553734 5057.483258 12258.2173 11396.99456 13931.38247 11592.58188 11519.83249 8841.197498 1.450940478 0.63931804 0.642283326 0.572036001 1.386488347 1.289078156 1.575734789 1.311200421 1.302971967 1 13.11002607 -5.579430141 24.99990661 1.078359197 1.398290576 0.297461979 0.297605251 118.885961 52555.88272 0.052037258 0.104074527 2.63E-06 5.579430141 0.31993138 FQLPLDK(ac)GNGKK ddPTM_HeLa_CUDC101_4h_R1 1 FQLPLDKGNGKK 12 2 Q03164-2;Q03164;Q03164-3;A0A3B3ITZ6 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 0 1 FQLPLDK(0.998)GNGK(0.002)K 78.903 0.026347 0 142.95 119.82 115.14 173.79 175.67 233.47 209.94 262.81 0 0 FALSE TRUE FALSE 126.1936177 123.5115122 121.3648167 180.8779074 162.7111741 229.0169487 218.0374561 292.7272281 0 0 0 SGS(ph)SS(ph)PDSEITELK ddPTM_HeLa_CUDC101_4h_R1 1 SGSSSPDSEITELK 14 0 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 0 S(0.068)GS(0.698)S(0.264)S(0.624)PDS(0.341)EIT(0.006)ELK 108.97 0.036806 13844000 5034.4 4257.7 3809.5 3366.4 3996.2 3689.9 3498.1 3064.1 4137.2 5874.4 TRUE FALSE FALSE 4444.275264 4388.87469 4015.453093 3503.696343 3701.408288 3619.521305 3633.022889 3412.904758 3966.662865 5839.458808 0.761076567 0.751589288 0.687641308 0.600003606 0.633861529 0.619838486 0.622150615 0.584455661 0.679286043 1 12.51161895 -8.396664769 0.281300662 1.102067195 0.561118286 0.244911625 0.101643193 0.264787096 0.048199995 0.053382075 0.021405362 4.01E-09 8.396664769 -0.540948909 MECPSCQHVS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 MECPSCQHVSK 11 0 A0A0A0MTR7;A0A0A0MTC1;Q63HN8;Q63HN8-4;Q63HN8-5 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 1 0 MECPS(0.048)CQHVS(0.952)K 86.67 0.029575 10366000 2175.9 2144 2214.3 2048.9 1793.6 1892.1 1842.4 1837.9 1744.4 1690.2 TRUE FALSE FALSE 1920.8443 2210.054099 2334.011756 2132.462998 1661.289701 1856.011345 1913.461985 2047.119107 1672.495094 1680.146615 1.143259929 1.315393596 1.389171477 1.269212448 0.988776626 1.104672252 1.138866077 1.218416946 0.99544592 1 10.71437142 -8.396135636 1.070569709 1.0223291 1.194820925 0.344044112 0.107950795 0.440538563 1.035803373 0.037996889 0.02434879 4.02E-09 8.396135636 0.172491825 KAPAGQEEPGT(ph)PPS(ph)SPLSAEQLDR ddPTM_HeLa_CUDC101_4h_R1 2 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 2 0 KAPAGQEEPGT(1)PPS(0.625)S(0.366)PLS(0.009)AEQLDR;KAPAGQEEPGT(1)PPS(0.524)S(0.437)PLS(0.039)AEQLDR ; 88.045 5.69E-05 79060000 4650.9 4141.2 3565.2 3505.7 3836.5 3344.3 3311 3943.4 4777 5100.6 TRUE FALSE FALSE 4105.728552 4268.785463 3757.945496 3648.677599 3553.489038 3280.513049 3438.706379 4392.300716 4580.090038 5070.261404 0.809766642 0.841926111 0.741173915 0.719623173 0.700849277 0.647010635 0.678210866 0.866286837 0.903324242 1 12.30784441 -8.395747448 0.391811734 1.03099593 0.70527245 0.617111152 0.0660879 0.52118915 0.171969577 0.070903639 0.027405598 4.02E-09 8.395747448 -0.325723481 FQQDDAHIFCAMEQIEDEIK ddPTM_HeLa_CUDC101_4h_R1 1 FQQDDAHIFCAMEQIEDEIK 20 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 135.81 2.38E-07 0 2264 2813.8 1968.7 1999.7 2425.1 1972.3 1872.7 1922.2 2040.5 734.61 FALSE FALSE TRUE 1998.617352 2900.489843 2075.133877 2081.256409 2246.205204 1934.681664 1944.930666 2141.015478 1956.389726 730.240507 2.736930275 3.971965147 2.841712911 2.850097179 3.075980013 2.649375986 2.663411092 2.931931956 2.679103265 1 9.512227888 -8.833757706 0.783101339 1.033112095 2.967724357 0.192449354 0.618385982 0.21660842 0.254310324 0.232735607 0.084234667 1.47E-09 8.833757706 1.934612261 S(ph)GECSPVPMGSFPR ddPTM_HeLa_CUDC101_4h_R1 2 SGECSPVPMGSFPR 14 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7;E7EMH9 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.559)GECS(0.392)PVPMGS(0.049)FPR;S(0.51)GECS(0.48)PVPMGS(0.01)FPR ; 115.37 0.0022741 31093000 3255.6 3298.9 3061.1 2730.6 3317.6 3255.7 3025.1 2490 3426.4 2378.8 TRUE FALSE FALSE 2873.983503 3400.535199 3226.592325 2841.965671 3072.867258 3193.602947 3141.77912 2773.451535 3285.162342 2364.650792 1.215394473 1.438070776 1.364511131 1.201854278 1.299501503 1.350560073 1.328644014 1.172879964 1.389280123 1 11.20741143 -8.395613994 0.814208054 1.02090709 1.30619436 0 0.138713668 0.238038093 0.331398325 0.032580197 0.018040356 4.02E-09 8.395613994 0.28528727 VNPVTSLSENYTCS(ph)DSEESSEKDKLAIPK ddPTM_HeLa_CUDC101_4h_R1 1 VNPVTSLSENYTCSDSEESSEKDKLAIPK 29 2 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 VNPVTSLS(0.001)ENY(0.022)T(0.238)CS(0.636)DS(0.065)EES(0.019)S(0.019)EKDKLAIPK 72.286 2.45E-05 196840000 1412.6 1655.2 1299.4 1298.1 1793.5 1444.4 1504 1556.2 1424.6 754.88 TRUE FALSE FALSE 1247.017169 1706.19475 1369.649494 1351.042129 1661.197078 1416.850477 1562.009784 1733.351518 1365.877385 750.3899402 1.661825542 2.273744168 1.825250341 1.800453413 2.213778449 1.88815228 2.081597447 2.309934375 1.820223476 1 9.551496677 -8.393985738 0.411485717 0.874841378 2.129658799 0.265111549 0.312202677 0.371985568 0.134953287 0.197855825 0.077155783 4.04E-09 8.393985738 1.254817421 KYIEIDS(ph)DEEPRGELLSLR ddPTM_HeLa_CUDC101_4h_R1 1 KYIEIDSDEEPRGELLSLR 19 2 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 0 KY(0.001)IEIDS(0.999)DEEPRGELLS(0.001)LR 67.413 0.014199 11143000 353.74 312.92 406.04 327.12 501.37 431.35 341.69 484.07 363.89 162.94 TRUE FALSE FALSE 312.2751334 322.5606943 427.9917506 340.4613675 464.384934 423.1227174 354.8690978 539.1745721 348.8903002 161.9708256 1.927971486 1.991474039 2.642400253 2.101991925 2.867089997 2.612339079 2.19094455 3.328837585 2.154031745 1 7.339590166 -8.3907481 0.175909767 0.030075503 3.312098704 0.374923065 0.473549604 1.736458764 0.157348338 1.802416249 0.89044596 4.07E-09 8.3907481 3.282023201 SPSSQET(ph)HDSPFCLR ddPTM_HeLa_CUDC101_4h_R1 1 SPSSQETHDSPFCLR 15 0 Q8TB45-2;Q8TB45 Q8TB45-2 DEPTOR DEP domain-containing mTOR-interacting protein 1 0 SPSSQET(0.846)HDS(0.154)PFCLR 118.48 0.0013687 5158600 4897.9 3949 3680.4 3949.8 4582.7 4195.8 3844.2 3941.8 4763.8 4850.4 TRUE FALSE FALSE 4323.775587 4070.664009 3879.373557 4110.889916 4244.643351 4115.772106 3992.472082 4390.518579 4567.434148 4821.549605 0.896760573 0.844264675 0.804590614 0.852607616 0.880348373 0.853620193 0.828047497 0.910603216 0.947295895 1 12.23528118 -8.388117881 0.707122996 0.993439865 0.851788279 0.671557931 0.032022997 0.213679427 0.22656882 0.01425253 0.007264563 4.09E-09 8.388117881 -0.141651586 SGSSS(ph)PDSEITELK ddPTM_HeLa_CUDC101_4h_R1 4 SGSSSPDSEITELK 14 0 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 SGS(0.001)S(0.007)S(0.95)PDS(0.042)EITELK;S(0.001)GS(0.002)S(0.085)S(0.87)PDS(0.042)EITELK;SGSS(0.048)S(0.952)PDSEITELK;SGSS(0.014)S(0.986)PDSEITELK ;;; 320.01 1.35E-166 760700000 29685.4 24704.1 22583.5 20834.6 21547.8 23027.4 19539.1 16711.1 24002 34241.2 TRUE FALSE FALSE 26205.72241 25465.20404 23804.43232 21684.32504 19958.26172 22588.19071 20292.72963 18613.42408 23012.6274 34037.53182 0.769906659 0.748150723 0.699358357 0.637071018 0.586360428 0.663625989 0.596186872 0.546849994 0.676095656 1 15.05483881 -8.387991293 0.202695128 1.183606126 0.489661622 0.267578525 0.104683794 0.538701344 0.05948243 0.124122061 0.057334939 4.09E-09 8.387991293 -0.693944504 KPAFNLSAFGT(ph)LSPSLGNSSILK ddPTM_HeLa_CUDC101_4h_R1 1 KPAFNLSAFGTLSPSLGNSSILK 23 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 KPAFNLSAFGT(0.481)LS(0.481)PS(0.038)LGNSSILK 81.574 0.0047324 39639000 824.47 540.35 419.93 648.98 670.76 714.02 538.5 396.39 931.3 1052.2 TRUE FALSE FALSE 727.8268764 556.997543 442.632686 675.4482095 621.2793711 700.4012581 559.2701254 441.5134353 892.9114198 1045.941468 0.695858133 0.532532231 0.423190685 0.645780123 0.593990572 0.669637145 0.534704993 0.422120596 0.853691576 1 10.0305864 -8.385860049 0.601680335 0.997670609 0.544171856 0.71578322 0.092099559 0.249124434 0.192263626 0.052056282 0.024018139 4.11E-09 8.385860049 -0.453498753 FRDQDLASCDR ddPTM_HeLa_CUDC101_4h_R1 2 FRDQDLASCDR 11 1 Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2;Q9Y383 Q96HJ9-2 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 0 ; ; 144.7 0.0013925 39979000 3398.7 3116.5 3344.4 4742.8 5204 4719.5 4813.2 2885.9 4736.9 3038.3 FALSE FALSE TRUE 3000.309538 3212.515671 3525.20838 4936.231884 4820.111288 4629.483401 4998.846736 3214.419191 4541.642977 3020.228056 0.993404962 1.063666588 1.167199402 1.634390447 1.595942822 1.532825771 1.655122276 1.064296845 1.503741735 1 11.56044178 -6.462922274 3.28048092 1.003174729 1.51185651 0.312427367 0.224013043 0.098001741 2.0869296 0.023329633 0.035880808 3.44E-07 6.462922274 0.508681781 FRDQDLASCDRDR ddPTM_HeLa_CUDC101_4h_R1 4 FRDQDLASCDRDR 13 2 Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2;Q9Y383 Q96HJ9-2 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 0 ;;; ;;; 90.697 0.0082375 70935100 5848.45 4589.17 4096.2 4300.68 5396.31 4746.36 4553.25 4941.47 4776.33 4678.92 FALSE FALSE TRUE 5162.903557 4730.556888 4317.652962 4476.08032 4998.234962 4655.831091 4728.870378 5503.986971 4579.447656 4651.089576 1.110041738 1.017085741 0.92831 0.962372418 1.074637433 1.001019442 1.016723136 1.183375826 0.984596745 1 12.18335301 -4.257661673 24.54673935 1.032743679 1.183375902 0.440709267 0.053373325 259.6022236 1686745.158 0.008661869 0.086396826 5.53E-05 4.257661673 0.150632222 FRELAEEAAR ddPTM_HeLa_CUDC101_4h_R1 1 FRELAEEAAR 10 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 123.62 0.004919 8862000 4553.3 3403.8 2994.7 3946.5 3488.8 3574.1 3339.3 3202.5 2751.9 2556.4 FALSE FALSE TRUE 4019.569076 3508.667044 3156.60254 4107.455328 3231.438175 3505.929997 3468.09792 3567.059655 2638.465517 2541.194419 1.581763696 1.380715705 1.242172782 1.616348319 1.271621782 1.379638634 1.364751116 1.403694117 1.038277708 1 11.31129104 -9.465884542 1.176156173 0.997692342 1.417495534 0.652959243 0.112105011 0.241381418 0.592090559 0.08286699 0.019978595 3.42E-10 9.465884542 0.419803192 FRIDELEPR ddPTM_HeLa_CUDC101_4h_R1 4 FRIDELEPR 9 1 Q14697;Q14697-2;F5H6X6 Q14697 GANAB Neutral alpha-glucosidase AB 0 0 ;;; ;;; 110.53 0.01239 65089600 13832.9 12454.9 12341.7 11972.9 13788 13171.9 12962.4 12684.1 12242.2 12881.3 FALSE FALSE TRUE 12211.42843 12838.62071 13008.92963 12461.20661 12770.88671 12920.66795 13462.36411 14128.00667 11737.57133 12804.68145 0.953669053 1.002650535 1.015951055 0.973175839 0.997360751 1.009058132 1.051362672 1.103346985 0.916662502 1 13.64438374 -3.821162125 0.745775288 0.981333111 1.273511567 0.700542615 0.026486257 1.623179482 0.408897069 0.003538173 0.461870258 0.000150952 3.821162125 0.292178456 DSHS(ph)S(ph)EEDEASSQTDLSQTISK ddPTM_HeLa_CUDC101_4h_R1 4 DSHSSEEDEASSQTDLSQTISK 22 0 A0A0A0MSK5;J3KN66;Q5JTV8;Q5JTV8-3;H0YDU3;Q5JTV8-2 A0A0A0MSK5 TOR1AIP1 Torsin-1A-interacting protein 1 2 0 DS(0.178)HS(0.866)S(0.866)EEDEAS(0.079)S(0.01)QTDLSQTISK;DS(0.322)HS(0.838)S(0.838)EEDEAS(0.002)S(0.001)QTDLSQTISK;DS(0.081)HS(0.968)S(0.951)EEDEASSQTDLSQTISK;DS(0.025)HS(0.989)S(0.985)EEDEAS(0.001)SQTDLSQTISK ;;; 115.39 2.10E-05 23937000 10672.3 7786.1 7578.2 8265.4 8194.8 8547.8 7971 6540.7 8367.2 12260.1 TRUE FALSE FALSE 9421.309172 8025.980512 7987.900415 8602.498738 7590.28593 8384.764957 8278.44414 7285.26685 8022.300474 12187.17638 0.773051023 0.658559478 0.655434874 0.705864793 0.622809229 0.687998983 0.679274992 0.597781358 0.658257518 1 13.57307629 -8.385623955 0.481305133 1.019411184 0.642444231 0 0.10943199 0.173186327 0.085738077 0.028824685 0.011866006 4.12E-09 8.385623955 -0.376966953 LS(ph)CEPVMEEK ddPTM_HeLa_CUDC101_4h_R1 3 LSCEPVMEEK 10 0 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 1 0 LS(1)CEPVMEEK;LS(1)CEPVMEEK;LS(1)CEPVMEEK ;; 140.63 0.0012044 32781600 5869.7 6045.4 6772.2 6025.8 6623.6 5802.3 4708.8 2974.56 4290.37 3830.3 TRUE FALSE FALSE 5181.662664 6231.651608 7138.325617 6271.55817 6134.990224 5691.630795 4890.419993 3313.171887 4113.519133 3807.517205 1.360903283 1.636670637 1.874797994 1.64715163 1.611283651 1.494840466 1.284411791 0.870165966 1.080367838 1 11.89463484 -8.385021157 0.966433572 1.050437512 1.495659678 0.309376242 0.256412541 0.429509419 0.831355332 0.093531104 0.057499617 4.12E-09 8.385021157 0.445222166 TASISSS(ph)PSEGTPTVGSYGCTPQSLPK ddPTM_HeLa_CUDC101_4h_R1 1 TASISSSPSEGTPTVGSYGCTPQSLPK 27 0 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 T(0.005)AS(0.001)IS(0.027)S(0.146)S(0.814)PS(0.007)EGTPTVGSYGCTPQSLPK 169.66 8.42E-14 15657000 3144.1 3308.1 2427.7 2464.4 2627.9 2320.5 1438.2 906.62 3225.9 2536.8 TRUE FALSE FALSE 2775.553364 3410.01864 2558.948805 2564.908884 2434.045053 2276.240329 1493.671856 1009.825956 3092.927037 2521.711001 1.10066275 1.352263855 1.01476688 1.017130386 0.965235529 0.902657096 0.592324757 0.400452691 1.226519231 1 11.30018723 -4.582804501 1.073326959 1.070111855 0.234636438 0.831190787 0.109019822 0.321243318 0.414879864 0.016058287 0.266439744 2.61E-05 4.582804501 -0.835475417 down ELS(ph)APAR ddPTM_HeLa_CUDC101_4h_R1 1 ELSAPAR 7 0 F5H672;F5H5N2;B4DNC9;B3KQ30;Q9H1K1 F5H672 ISCU "Iron-sulfur cluster assembly enzyme ISCU, mitochondrial" 1 0 ELS(1)APAR 73.985 0.025665 4917800 8950.1 8210.7 7796.9 7993.3 8933 7593.5 6899.6 7321.3 8601.6 8718.6 TRUE FALSE FALSE 7900.982845 8463.661935 8218.423998 8319.301324 8274.030387 7448.666639 7165.719883 8154.727198 8247.038407 8666.741379 0.911644008 0.976567958 0.948271517 0.959911108 0.954687584 0.859454126 0.826806705 0.94092195 0.951573151 1 13.08127394 -8.383585292 0.013857234 1.909686953 1.07E-06 0.299860753 0.04214126 829.019659 4.947677545 351.7472833 329.7524485 4.13E-09 8.383585292 -1.909685879 PSDSVSSTPAATS(ph)TPSK ddPTM_HeLa_CUDC101_4h_R1 1 PSDSVSSTPAATSTPSK 17 0 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 0 PSDSVSSTPAAT(0.002)S(0.595)T(0.402)PS(0.001)K 147.56 0.00014321 22848000 5304.9 4604.8 3932.7 4051.9 3569.6 3097 2404.7 2057.3 3972.2 5417.7 TRUE FALSE FALSE 4683.067664 4746.66843 4145.313658 4217.153996 3306.27772 3037.929885 2497.450085 2291.494716 3808.464235 5385.475279 0.8695737 0.881383385 0.769721045 0.783060691 0.613924964 0.564096895 0.463738102 0.425495355 0.707173283 1 12.39485796 -4.581294266 0.298631146 0.993621468 1.53E-15 0.742395549 0.090779627 0.68715826 0.0523838 0.016025259 0.24313276 2.62E-05 4.581294266 -0.993621468 down SAS(ph)APTLAETEKETAEHLDLAGASSRPK ddPTM_HeLa_CUDC101_4h_R1 1 SASAPTLAETEKETAEHLDLAGASSRPK 28 2 Q86W92-2 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.244)AS(0.665)APT(0.086)LAET(0.004)EKET(0.001)AEHLDLAGASSRPK 66.19 0.00032078 48810000 4223.7 2777.2 3570.3 3617 4217.7 4008.8 3272.1 3159.3 3903.2 4052.7 TRUE FALSE FALSE 3728.604289 2862.76224 3763.321218 3764.516894 3906.568674 3932.338819 3398.305993 3518.941942 3742.308444 4028.59436 0.925534803 0.710610696 0.934152432 0.934449229 0.969710108 0.976106917 0.843546331 0.873491255 0.928936525 1 11.97606083 -8.38230968 1.243941951 0.986582703 0.89802618 0.098992942 0.075532813 0.477681051 1.499543366 0.021784298 0.014928018 4.15E-09 8.38230968 -0.088556523 LDSDAVNTIESQSVS(ph)PDHNKEPK ddPTM_HeLa_CUDC101_4h_R1 1 LDSDAVNTIESQSVSPDHNKEPK 23 1 Q3T7B4;Q9H3H1-6;Q9H3H1-3;Q9H3H1-2;Q9H3H1-5;Q9H3H1-4;Q9H3H1 Q3T7B4 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" 1 0 LDSDAVNT(0.001)IES(0.408)QS(0.151)VS(0.44)PDHNKEPK 76.492 0.00052142 16684000 2501.8 1964.8 2029.9 1961 2143 2191 2058.9 1849.5 2141.7 2505.1 TRUE FALSE FALSE 2208.542796 2025.333159 2139.642534 2040.978056 1984.915159 2149.210325 2138.312463 2060.039604 2053.41822 2490.199554 0.886893901 0.81332163 0.85922533 0.819604217 0.797090802 0.863067509 0.858691208 0.827258844 0.824599866 1 11.28204564 -8.382097445 0.602245492 0.998723347 0.831593613 0 0.057509495 0.187327858 0.144992732 0.014412833 0.006677537 4.15E-09 8.382097445 -0.167129735 STFS(ph)PISDIGLAK ddPTM_HeLa_CUDC101_4h_R1 2 STFSPISDIGLAK 13 0 Q8TEK3-1;Q8TEK3;H7C2S2 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 0 S(0.002)T(0.007)FS(0.965)PIS(0.026)DIGLAK;S(0.041)T(0.041)FS(0.917)PIS(0.002)DIGLAK ; 147.52 0.00045604 20190800 4533.3 2988.4 3129.9 3214.2 3386.4 3242.4 2980.1 2904.4 5055.7 5683.1 TRUE FALSE FALSE 4001.913446 3080.469062 3299.111861 3345.288969 3136.592019 3180.556622 3095.043455 3235.025156 4847.301906 5649.296668 0.708391448 0.545283642 0.5839863 0.592160257 0.555218145 0.56300046 0.547863502 0.572642109 0.858036352 1 12.46385555 -8.37969951 0.511538021 1.016192235 0.547245124 0.890391605 0.049190087 0.119838288 0.067104846 0.025122294 0.01068136 4.17E-09 8.37969951 -0.468947111 VSGEEELHTGPPAPQGPLSVPQGLPTQSLAS(ph)PPAR ddPTM_HeLa_CUDC101_4h_R1 1 VSGEEELHTGPPAPQGPLSVPQGLPTQSLASPPAR 35 0 Q9UPN7 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 1 0 VSGEEELHTGPPAPQGPLS(0.005)VPQGLPT(0.134)QS(0.095)LAS(0.765)PPAR 96.197 1.58E-12 20513000 1212.3 1120.6 1045 981.57 1145.1 1308.6 972.88 1000.7 1171.9 1011.2 TRUE FALSE FALSE 1070.196032 1155.124358 1101.495861 1021.602667 1060.628254 1283.640635 1010.404307 1114.615643 1123.593786 1005.185337 1.064675331 1.149165547 1.095813697 1.01633264 1.05515691 1.277018862 1.005192048 1.1088658 1.117797628 1 9.973245817 -8.378959434 0.592920424 0.9994639 1.101451156 0 0.081056147 0.896405751 0.673276948 0.041952329 0.019314739 4.18E-09 8.378959434 0.101987256 VGQQAIVLCISPS(ph)KPNPVFK ddPTM_HeLa_CUDC101_4h_R1 1 VGQQAIVLCISPSKPNPVFK 20 1 C9JP85;Q16656-2;Q16656;Q16656-4 C9JP85 NRF1 Nuclear respiratory factor 1 1 0 VGQQAIVLCIS(0.379)PS(0.621)KPNPVFK 105.38 0.00014388 43006000 3858.9 3761 3291.2 3701.9 3763 3505.1 3165.8 3766.8 3938.5 2946.7 TRUE FALSE FALSE 3406.565592 3876.871952 3469.132227 3852.879483 3485.410987 3438.246057 3287.905966 4195.597286 3776.153363 2929.172897 1.162978667 1.323538107 1.184338497 1.315347239 1.189895957 1.173794166 1.122469066 1.432348801 1.289153456 1 11.51627764 -8.377987968 0.692530902 1.008826667 1.24068785 0 0.123565673 0.372451216 0.379919725 0.04043007 0.020515891 4.19E-09 8.377987968 0.231861183 GPPASS(ph)PAPAPKFS(ph)PVTPK ddPTM_HeLa_CUDC101_4h_R1 1 GPPASSPAPAPKFSPVTPK 19 1 Q15942-2;Q15942;H0Y2Y8;H7C3D3 Q15942-2 ZYX Zyxin 2 0 GPPAS(0.167)S(0.834)PAPAPKFS(0.951)PVT(0.048)PK 75.956 0.010585 46591000 2984.8 3197.7 2641 2292.2 3216.5 2861.4 2508.6 2103.6 2585.5 2374.9 TRUE FALSE FALSE 2634.926269 3296.217347 2783.780449 2385.685824 2979.225203 2806.823562 2605.357542 2343.065321 2478.924596 2360.773989 1.116128135 1.396244351 1.179181261 1.010552401 1.261969683 1.188942091 1.103603121 0.992498787 1.050047403 1 11.20504422 -8.376217584 1.195799029 1.020368959 1.159825064 0.176989962 0.111681652 0.46616182 1.356752007 0.033080399 0.022436759 4.21E-09 8.376217584 0.139456106 AKS(ph)PNGSSSVNWPPEFRPGEPWK ddPTM_HeLa_CUDC101_4h_R1 1 AKSPNGSSSVNWPPEFRPGEPWK 23 2 Q8NDV7-2;Q8NDV7-6;Q8NDV7-5;Q8NDV7;H7C269 Q8NDV7-2 TNRC6A Trinucleotide repeat-containing gene 6A protein 1 0 AKS(0.25)PNGS(0.25)S(0.25)S(0.25)VNWPPEFRPGEPWK 67.866 0.0022916 15535000 612.72 450.17 403.39 501.58 632.61 601.52 388.66 427.33 634.89 640.89 TRUE FALSE FALSE 540.8978904 464.0392041 425.1984836 522.0366004 585.9436206 590.0470082 403.6507464 475.9755199 608.7195655 637.0779578 0.849029359 0.728386846 0.667419863 0.819423422 0.919736138 0.926177089 0.6335971 0.747122882 0.955486778 1 9.315326112 -8.374197335 0.795800893 0.985697087 0.782600468 0.408798495 0.092375218 0.41815197 0.558794037 0.040326477 0.02239917 4.22E-09 8.374197335 -0.203096619 EKPELSEPSHLNGPS(ph)S(ph)DPEAAFLSR ddPTM_HeLa_CUDC101_4h_R1 1 EKPELSEPSHLNGPSSDPEAAFLSR 25 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 2 0 EKPELSEPSHLNGPS(1)S(1)DPEAAFLSR 87.802 3.01E-05 13957000 1188.5 922.61 882.74 778.22 829.91 880.21 828.97 775.15 964.78 1459.1 TRUE FALSE FALSE 1049.185832 951.0345205 930.4635945 809.9591754 768.6891927 863.4214608 860.9436506 863.3899427 925.01136 1450.421208 0.723366306 0.655695404 0.641512679 0.558430317 0.529976526 0.595290151 0.593581813 0.595268421 0.637753609 1 10.50225621 -8.373277713 0.426666392 1.036782355 0.559702336 0.196907322 0.113357012 0.15585321 0.061253293 0.031798053 0.012762197 4.23E-09 8.373277713 -0.477080019 PWSS(ph)T(ph)DS(ph)DGS(ph)VRSMR ddPTM_HeLa_CUDC101_4h_R1 1 PWSSTDSDGSVRSMR 15 1 Q9Y2K5-2;H7C0E9;A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5;H0YIX9 Q9Y2K5-2;H0YIX9 R3HDM2 R3H domain-containing protein 2 4 0 PWS(0.454)S(0.552)T(0.991)DS(0.655)DGS(0.972)VRS(0.376)MR 47.301 0.035104 241720000 2067.2 1433.7 1626.7 1341.1 1618.5 1629.7 1706.1 1374.6 1726.7 2380.5 TRUE FALSE FALSE 1824.88595 1477.870598 1714.644322 1395.795855 1499.10648 1598.616188 1771.904849 1531.078908 1655.524695 2366.34068 0.771184794 0.62453839 0.724597408 0.589854143 0.633512534 0.675564681 0.748795329 0.647023871 0.699613842 1 11.20844208 -8.368366353 0.611896269 0.995491378 0.658892325 0.153651274 0.101776064 0.189662662 0.152049734 0.029342876 0.013904726 4.28E-09 8.368366353 -0.336599053 FSASGELGNGNIK ddPTM_HeLa_CUDC101_4h_R1 2 FSASGELGNGNIK 13 0 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 0 ; ; 208.17 4.79E-15 1736020 935.32 842.95 720.69 783.75 709.11 663.84 817.7 826.3 648.34 470.85 FALSE FALSE TRUE 825.6832075 868.9202904 759.6526814 815.7147127 656.800368 651.178358 849.2389629 920.362652 621.6151508 468.0493633 1.764094286 1.856471472 1.623018299 1.74279633 1.403271577 1.391260002 1.814421789 1.966379455 1.328097418 1 8.870516883 -9.226197468 0.867061128 0.981256265 1.68665911 0.505506766 0.199989882 0.311970784 0.404717974 0.14484398 0.036375735 5.94E-10 9.226197468 0.705402846 ELPPS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 2 ELPPSPEK 8 0 E7EVA0;P27816;P27816-6;P27816-5;P27816-4;H0Y2V1;H7C4C5;B5MEG9;F8W9U4;P27816-3 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 ELPPS(1)PEK;ELPPS(1)PEK ; 114.89 0.00078647 13070000 8413.7 6428.8 6650.5 6306.6 5947.4 6313.5 5811.9 5764.9 6516.5 9691.2 TRUE FALSE FALSE 7427.45884 6626.863708 7010.046147 6563.810407 5508.672151 6193.080507 6036.06693 6421.152913 6247.887112 9633.556311 0.770998643 0.687893805 0.727669608 0.681348631 0.571821244 0.642865449 0.626566839 0.666540238 0.648554585 1 13.23385276 -8.368128584 0.364186063 1.052936258 0.612212342 0 0.113117302 0.246364356 0.07190662 0.044320895 0.017547221 4.28E-09 8.368128584 -0.440723915 EELQANGSAPAADKEEPAAAGS(ph)GAASPSAAEK ddPTM_HeLa_CUDC101_4h_R1 1 EELQANGSAPAADKEEPAAAGSGAASPSAAEK 32 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 EELQANGSAPAADKEEPAAAGS(0.816)GAAS(0.172)PS(0.012)AAEK 105.51 2.80E-11 69689000 3868.9 2614 2793.9 2613.5 2054.8 2168.4 2169.9 828.29 3412.5 3392.7 TRUE FALSE FALSE 3415.393407 2694.534242 2944.946685 2720.089827 1903.221498 2127.041383 2253.59377 922.5791855 3271.835306 3372.52007 1.012712552 0.798967593 0.873218431 0.806545186 0.564332149 0.630697917 0.668222493 0.273557804 0.97014554 1 11.71961131 -4.568446527 0.341240377 1.033081417 3.07E-14 0.82932712 0.0907168 1.441066193 0.137667555 0.033129459 0.594508569 2.70E-05 4.568446527 -1.033081417 down FSEVLK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 FSEVLKR 7 1 P12277;H0YJG0;H0YJK0 P12277 CKB Creatine kinase B-type 0 1 ; FSEVLK(1)R;FSEVLK(1)R 110.81 0.0075738 10563200 9041.6 4059.5 3752.5 3247.2 9004.1 7090.5 8654.5 7694.7 8530.3 5649.5 FALSE TRUE FALSE 7981.757354 4184.568383 3955.371501 3379.634852 8339.885482 6955.260526 8988.306964 8570.633545 8178.677423 5615.896523 1.421279278 0.745129182 0.704317019 0.601797921 1.485049706 1.238495136 1.600511499 1.526138081 1.456344039 1 12.45530064 S(ph)RTFEAFMY(ph)LS(ph)LPLAS(ph)T(ph)SK ddPTM_HeLa_CUDC101_4h_R1 1 SRTFEAFMYLSLPLASTSK 19 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 5 0 S(0.882)RT(0.208)FEAFMY(0.91)LS(0.951)LPLAS(0.683)T(0.683)S(0.683)K 42.813 0.036572 20883000 5484.4 4349.9 4339.1 4147.5 4560.3 5360.7 4996.1 3341.3 5738.3 5472.9 TRUE FALSE FALSE 4841.526946 4483.915263 4573.684871 4316.652977 4223.895754 5258.453579 5188.801251 3721.660086 5501.764845 5440.346947 0.889929814 0.824196564 0.840697278 0.793451781 0.776401909 0.966565851 0.953762931 0.684085063 1.011289335 1 12.40948294 -8.366808785 0.692605813 0.993326848 0.839713599 0.414655441 0.078613113 0.516904884 0.52856509 0.037038229 0.018981758 4.30E-09 8.366808785 -0.153613249 S(ph)KTPVQAAAVSIVEKPVTR ddPTM_HeLa_CUDC101_4h_R1 2 SKTPVQAAAVSIVEKPVTR 19 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 S(0.5)KT(0.5)PVQAAAVSIVEKPVTR;S(0.5)KT(0.5)PVQAAAVSIVEKPVTR ; 86.179 0.0038145 62617000 2436.8 1947.29 2150.07 1736.45 2142.15 2004.08 2108.04 1574.2 2268.76 2433.77 TRUE FALSE FALSE 2151.161998 2007.283697 2266.309288 1807.269937 1984.127862 1965.855513 2189.347809 1753.400565 2175.240753 2419.293828 0.889169382 0.829698185 0.936764795 0.747023745 0.820126865 0.812574103 0.904953249 0.724757177 0.899122185 1 11.24037028 -8.366722137 0.295670468 1.044224006 0.793220348 0.362335682 0.064666034 1.10474741 0.22283973 0.105643486 0.04298616 4.30E-09 8.366722137 -0.251003658 ATSEVPGSQAS(ph)PNPVPGDGLHR ddPTM_HeLa_CUDC101_4h_R1 1 ATSEVPGSQASPNPVPGDGLHR 22 0 Q96GM8;Q96GM8-2 Q96GM8 TOE1 Target of EGR1 protein 1 1 0 ATSEVPGS(0.012)QAS(0.988)PNPVPGDGLHR 84.878 0.00046934 13352000 1841.9 1717.4 1297 1366 1489.7 1832.4 1385.9 1601.2 1625.1 1843.7 TRUE FALSE FALSE 1625.995274 1770.311058 1367.119743 1421.711384 1379.807799 1797.450023 1439.354627 1783.474136 1558.11269 1832.73359 0.887196744 0.965940204 0.745945701 0.775732704 0.752868724 0.98074812 0.785359441 0.973122414 0.850157763 1 10.83978137 -8.365969164 0.612892004 0.995313571 0.844297922 0.005777049 0.097095803 0.681537578 0.54847608 0.04728445 0.022479239 4.31E-09 8.365969164 -0.151015649 FSGEELDKLWR ddPTM_HeLa_CUDC101_4h_R1 1 FSGEELDKLWR 11 1 P30533;A0A3B3IRQ7 P30533 LRPAP1 Alpha-2-macroglobulin receptor-associated protein 0 0 88.134 0.034246 7201100 4137.4 4444.2 3949.3 4202.5 5033.1 4092.3 4076.1 4336.7 4194.6 3998.1 FALSE FALSE TRUE 3652.420244 4581.120534 4162.811104 4373.896115 4661.81824 4014.246196 4233.316542 4830.372398 4021.696813 3974.319123 0.919005276 1.152680596 1.04742749 1.100539735 1.172985383 1.010046267 1.065167746 1.21539621 1.011920957 1 11.95649201 -7.263038168 24.99911052 0.961752491 1.103419113 0.478839763 0.062399613 81.80994612 1279203.455 0.010428304 0.012263334 5.46E-08 7.263038168 0.141666622 VENMSSNQDGNDS(ph)DEFM ddPTM_HeLa_CUDC101_4h_R1 9 VENMSSNQDGNDSDEFM 17 0 Q86WR0-2;Q86WR0 Q86WR0-2 CCDC25 Coiled-coil domain-containing protein 25 1 0 VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM ;;;;;;;; 157.68 5.75E-05 150567800 14981.3 13119.44 12459.43 11874.5 14317.52 12943.86 12652.25 11659.52 14478.91 13915.51 TRUE FALSE FALSE 13225.21472 13523.6344 13133.02447 12358.79344 13261.34507 12696.97744 13140.25152 12986.79263 13882.0832 13832.73993 0.956080631 0.977654063 0.94941599 0.89344508 0.958692576 0.917893165 0.94993845 0.93884456 1.003567137 1 13.75579933 -8.364993351 0.359982349 1.008482753 0.931369274 0.606732227 0.020217393 0.855392453 0.24479139 0.026829049 0.010655721 4.32E-09 8.364993351 -0.077113479 ENNVSQPASSSSSSSSSNNGSAS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 1 ENNVSQPASSSSSSSSSNNGSASPTK 26 0 A0A3B3IRW4;Q02446 A0A3B3IRW4 SP4 Transcription factor Sp4 1 0 ENNVSQPASSSSSSS(0.002)S(0.033)S(0.002)NNGS(0.102)AS(0.684)PT(0.175)K 115.08 3.40E-08 6214400 3976.7 2820.6 3424.6 2929 2798.5 3017.6 3376.6 2693.9 3982.8 4389.6 TRUE FALSE FALSE 3510.557254 2907.499343 3609.744235 3048.45728 2592.06023 2960.044308 3506.836593 3000.562687 3818.627298 4363.490464 0.804529604 0.666324211 0.827260714 0.698628152 0.594033665 0.678366169 0.803676924 0.687651941 0.875131349 1 12.09126693 -8.363889107 0.500580257 1.011735641 0.69465438 0.585199196 0.073750887 0.354783924 0.19145142 0.049918906 0.021354878 4.33E-09 8.363889107 -0.317081261 FSGWYDADLSPAGHEEAK ddPTM_HeLa_CUDC101_4h_R1 1 FSGWYDADLSPAGHEEAK 18 0 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 0 0 62.203 0.033815 30737000 1457.6 1224.6 1248.9 1098.3 1892.5 1418.1 1248.8 1439 1370.4 2102.5 FALSE FALSE TRUE 1286.742338 1262.328474 1316.419312 1143.093421 1752.894045 1391.052105 1296.966634 1602.809943 1313.911532 2089.994236 0.615667888 0.603986582 0.629867436 0.54693616 0.838707598 0.665577005 0.62055991 0.766896825 0.628667538 1 11.02928325 -9.227813864 0.890159515 1.00696036 0.657660899 0 0.138503913 0.258621632 0.357167403 0.060110183 0.015453563 5.92E-10 9.227813864 -0.349299461 FSHDLK ddPTM_HeLa_CUDC101_4h_R1 1 FSHDLK 6 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 0 114.02 0.01814 5896100 7469.4 3708.9 7789.7 8262.9 6589.9 5962.7 6545.8 3020.2 7276 8347.3 FALSE FALSE TRUE 6593.848255 3823.166813 8210.834745 8599.896777 6103.776206 5848.971432 6798.273699 3364.00736 6976.0802 8297.649888 0.794664555 0.460752968 0.989537382 1.036425602 0.735603007 0.704894941 0.819301102 0.405416884 0.84072964 1 13.01848707 -13.52287875 0.038998833 2.254761693 3.24E-14 0.165283873 0.185746369 768.0070104 2.392463187 118.6936799 39.65070706 3.00E-14 13.52287875 -2.254761693 FSHEEIAMATVTALR ddPTM_HeLa_CUDC101_4h_R1 1 FSHEEIAMATVTALR 15 0 P04075;H3BQN4;J3KPS3;P04075-2;H3BU78;H3BR68 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 74.89 0.027868 18139000 2357.1 2046.9 1733.8 1741.8 1903.8 1807.1 1798.8 1717.9 1708.5 3922.8 FALSE FALSE TRUE 2080.804311 2109.962563 1827.534472 1812.838133 1763.360467 1772.632578 1868.180319 1913.458792 1638.074907 3899.467011 0.533612492 0.541089989 0.468662632 0.464893825 0.45220551 0.454583299 0.479086068 0.49069752 0.420076616 1 11.92906123 -9.103836319 0.481571727 1.100808527 0.457569849 0 0.181315504 0.103628989 0.035591653 0.0317045 0.00590873 7.87E-10 9.103836319 -0.643238678 ASS(ph)HSSQTQGGGSVTK ddPTM_HeLa_CUDC101_4h_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AS(0.213)S(0.341)HS(0.341)S(0.099)QT(0.006)QGGGSVTK 77.357 0.013085 50442000 4646 1048.9 3174.6 2219.6 4499.1 3306 4855.1 2050.6 5813.1 6283.6 TRUE FALSE FALSE 4101.402923 1081.215366 3346.228479 2310.124882 4167.210356 3242.943558 5042.362833 2284.032015 5573.481558 6246.224868 0.656621081 0.173099014 0.535720143 0.369843374 0.667156634 0.519184568 0.807265659 0.365665992 0.892296015 1 12.60876879 -8.36356545 0.947028569 0.953353776 0.512624807 0.503429014 0.172161727 0.275641038 0.51435136 0.058775786 0.036296995 4.33E-09 8.36356545 -0.44072897 TSPTTPEAS(ph)AT(ph)NSPCTSKPAT(ph)PAPSEK ddPTM_HeLa_CUDC101_4h_R1 1 TSPTTPEASATNSPCTSKPATPAPSEK 27 1 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 3 0 T(0.108)S(0.049)PT(0.102)T(0.387)PEAS(0.551)AT(0.538)NS(0.207)PCT(0.122)S(0.118)KPAT(0.777)PAPS(0.042)EK 48.388 0.022873 11639000 3647 2868.4 2782.1 2918.5 2993.9 3704.4 2784.5 2359.3 3601.6 3694.6 TRUE FALSE FALSE 3219.504188 2956.772004 2932.508741 3037.529045 2773.045962 3633.744742 2891.899098 2627.873175 3453.140524 3672.624355 0.87662224 0.805084245 0.798477725 0.827073164 0.755058425 0.98941367 0.787420334 0.715530074 0.940237876 1 11.84259563 -8.360591225 0.567211497 1.001398393 0.810231982 0.432190545 0.070282741 0.486943054 0.336811365 0.042222344 0.019290354 4.36E-09 8.360591225 -0.191166411 GKHSLDS(ph)DEEEDDDDGGSSK ddPTM_HeLa_CUDC101_4h_R1 1 GKHSLDSDEEEDDDDGGSSK 20 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 GKHS(0.141)LDS(0.859)DEEEDDDDGGSSK 80.813 0.0019167 19872000 2354.3 1766.7 1752.9 1758.7 2219.2 2087.4 1713.6 1678.5 2375.7 2472.2 TRUE FALSE FALSE 2078.332523 1821.129933 1847.667076 1830.427388 2055.494037 2047.586323 1779.694126 1869.573655 2277.77264 2457.495244 0.845711717 0.741051254 0.751849706 0.744834559 0.836418317 0.833200523 0.724190262 0.760763895 0.926867568 1 11.26297291 -8.360148964 0.652032355 0.993870159 0.769582135 0.738456702 0.043998743 0.216394906 0.196942958 0.022434459 0.011136986 4.36E-09 8.360148964 -0.224288024 KPSVGVPPPAS(ph)PSYPR ddPTM_HeLa_CUDC101_4h_R1 2 KPSVGVPPPASPSYPR 16 1 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 KPSVGVPPPAS(0.5)PS(0.5)Y(0.001)PR;KPSVGVPPPAS(0.942)PS(0.058)YPR ; 107.63 0.0029745 232144000 9931.2 7951.4 8624.3 8527 9108.4 7939 8134 8307.8 9502.1 9184.6 TRUE FALSE FALSE 8767.079791 8196.373209 9090.555745 8874.767917 8436.491478 7787.576802 8447.731105 9253.526371 9110.419416 9129.969591 0.960252902 0.897743758 0.995683026 0.972047916 0.924043765 0.852968537 0.925274835 1.013533099 0.997858681 1 13.15639434 -8.355286057 0.429655084 1.005868548 0.93291693 0.20135794 0.044486949 1.418896941 0.569970455 0.044281183 0.018133668 4.41E-09 8.355286057 -0.072951618 IT(ph)RGNREGLSRTSSSR ddPTM_HeLa_CUDC101_4h_R1 1 ITRGNREGLSRTSSSR 16 3 Q9Y2K5-2 Q9Y2K5-2 R3HDM2 R3H domain-containing protein 2 1 0 IT(1)RGNREGLSRTSSSR 56.286 0.039853 10541000 1083.7 1546.1 761.32 1501.5 953.16 1103.6 1504.9 1172.5 992.26 459.68 TRUE FALSE FALSE 956.6703288 1593.733508 802.4792621 1562.73766 882.8472858 1082.550669 1562.944497 1305.972661 951.3586228 456.9458029 2.093618811 3.487795485 1.756180398 3.419962827 1.932061264 2.369100803 3.420415478 2.858047174 2.081994444 1 8.835879251 -8.35254756 0.503304623 0.917285649 2.806452926 0.268327801 0.676048211 0.500631656 0.274216432 0.419264217 0.181849783 4.44E-09 8.35254756 1.889167276 FSPDGELYASGSEDGTLR ddPTM_HeLa_CUDC101_4h_R1 2 FSPDGELYASGSEDGTLR 18 0 Q9Y3F4-2;Q9Y3F4;H0YH33 Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein 0 0 ; ; 148.52 0.00039008 11267300 2214.9 1631.33 1365.19 1952.77 1488.49 1682.7 1555.51 1675.28 1997.52 2076.47 FALSE FALSE TRUE 1955.27278 1681.589344 1438.996301 2032.412401 1378.687058 1650.605301 1615.506542 1865.987103 1915.18138 2064.119064 0.947267439 0.814676524 0.697147915 0.984639131 0.667930006 0.799665741 0.782661509 0.90401137 0.927844432 1 11.01131048 -7.319426032 3.23113622 0.977736281 0.802299761 0.384748237 0.08728419 0.153605419 3.104608298 0.014102737 0.016306941 4.79E-08 7.319426032 -0.17543652 FSPVTPK(ac)FTPVASK ddPTM_HeLa_CUDC101_4h_R1 1 FSPVTPKFTPVASK 14 1 Q15942-2;Q15942;H0Y2Y8;H7C3D3 Q15942-2 ZYX Zyxin 0 1 FSPVTPK(1)FTPVASK 141.73 0.0022137 452320 0 207.41 201.69 142.54 155.91 194.6 192.61 327.48 0 137.65 FALSE TRUE FALSE 0 213.8000563 212.5939715 148.3533973 144.4088299 190.8883292 200.0390322 364.7589995 0 136.8312517 0 1.562508956 1.553694561 1.084206974 1.055379003 1.395063824 1.46193965 2.665757968 0 1 7.096253963 -7.242974097 24.36738268 0.52777778 1.495613029 0.536446295 0.503138708 433.1522305 571601.9373 0.091310247 0.111710953 5.72E-08 7.242974097 0.96783525 FSQMLQDK(ac)PLR ddPTM_HeLa_CUDC101_4h_R1 1 FSQMLQDKPLR 11 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 0 1 FSQMLQDK(1)PLR 151.15 0.00012991 462040 226.2 159.98 0 232.39 320.84 65.876 315.85 326.29 163.68 0 FALSE TRUE FALSE 199.6851789 164.9087942 0 241.8678687 297.1722724 64.61952506 328.0324403 363.4335347 156.9330411 0 0 AGGSPAPGPETPAISPS(ph)KR ddPTM_HeLa_CUDC101_4h_R1 1 AGGSPAPGPETPAISPSKR 19 1 P33316;H0YKI0 P33316 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 AGGSPAPGPETPAIS(0.048)PS(0.952)KR 110.33 0.00016448 70278000 3433.2 2743.6 2307.9 2592.2 3212.6 2703.2 2895.8 3153.6 2864.9 3467.1 TRUE FALSE FALSE 3030.7655 2828.127064 2432.672055 2697.92112 2975.612898 2651.640964 3007.491976 3512.593077 2746.807609 3446.477535 0.879380605 0.820584796 0.705843004 0.78280537 0.863378005 0.769377121 0.872627761 1.019183512 0.796989849 1 11.7509069 -8.348634918 0.883125679 0.984632624 0.830179134 0 0.098414986 0.401013336 0.656119532 0.029510153 0.017751836 4.48E-09 8.348634918 -0.154453491 IACDEEFS(ph)DS(ph)EDEGEGGRR ddPTM_HeLa_CUDC101_4h_R1 3 IACDEEFSDSEDEGEGGRR 19 1 Q92769;Q92769-3 Q92769 HDAC2 Histone deacetylase 2 2 0 IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR;IACDEEFS(1)DS(1)EDEGEGGRR ;; 91.932 0.0059551 247103000 9247.1 8736.5 8558.4 7737.6 9327 8265.5 7721.3 8361.9 8594.9 7369.7 TRUE FALSE FALSE 8163.168956 9005.66121 9021.092992 8053.172773 8638.965792 8107.849359 8019.113127 9313.784896 8240.614584 7325.864697 1.114294257 1.229296688 1.231403167 1.099279485 1.179241789 1.106742985 1.094630253 1.27135639 1.124865791 1 12.83878334 -8.348082741 0.853082135 1.013198687 1.165444829 0.213507383 0.068794224 0.308600849 0.472723062 0.022281793 0.013154713 4.49E-09 8.348082741 0.152246142 (ac)SSAPT(ph)TPPSVDKVDGFSR ddPTM_HeLa_CUDC101_4h_R1 1 SSAPTTPPSVDKVDGFSR 18 1 Q16537-2;Q16537 Q16537-2 PPP2R5E Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform 1 0 S(0.05)S(0.05)APT(0.89)T(0.01)PPSVDKVDGFSR 66.708 0.0031263 30983000 2224 1897.6 1722.9 2007.4 1946.4 1418.8 1364.8 596.82 2409.4 2605 TRUE FALSE FALSE 1963.306091 1956.062807 1816.045185 2089.270449 1802.81795 1391.738754 1417.440793 664.7595764 2310.083512 2589.505344 0.758178042 0.755380873 0.701309688 0.806822219 0.696201672 0.537453517 0.54737898 0.256712958 0.892094514 1 11.33846082 -4.555526888 0.221318305 0.992016694 1.43E-23 0.829456922 0.08163442 3.389294744 0.16100971 0.090955219 0.932810743 2.78E-05 4.555526888 -0.992016694 down SFSASQSTDREGAS(ph)PVTEVR ddPTM_HeLa_CUDC101_4h_R1 2 SFSASQSTDREGASPVTEVR 20 1 Q9ULJ3-2;Q9ULJ3 Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 S(0.001)FS(0.001)AS(0.004)QS(0.012)T(0.012)DREGAS(0.967)PVT(0.003)EVR;S(0.001)FS(0.003)AS(0.009)QS(0.009)T(0.012)DREGAS(0.947)PVT(0.019)EVR ; 61.684 0.012499 22863000 1254.97 1011.86 819.32 771.34 997.39 822.55 691.55 980.02 1533.1 1603.3 TRUE FALSE FALSE 1107.864319 1043.034207 863.6149175 802.7985792 923.8145268 806.8612292 718.2233152 1091.581515 1469.904969 1593.7635 0.695124665 0.654447292 0.541871437 0.503712489 0.579643421 0.506261581 0.450646106 0.68490809 0.922285501 1 10.63822185 -8.347871541 0.449533558 1.030162961 0.520068668 0.851086285 0.066638688 0.250478913 0.110187423 0.055229041 0.02307195 4.49E-09 8.347871541 -0.510094293 GSPSQEWVIHAS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 1 GSPSQEWVIHASPVK 15 0 Q5T7B8-4;Q5T7B8-2;Q5T7B8 Q5T7B8-4 KIF24 Kinesin-like protein KIF24 1 0 GSPSQEWVIHAS(1)PVK 62.556 0.03823 8038000 2100.3 1759.3 1356.6 1558.9 1950.2 1814.6 1563.5 1552.8 2227.4 2245.6 TRUE FALSE FALSE 1854.106018 1813.501948 1429.941899 1622.47868 1806.337631 1779.989528 1623.804719 1729.564475 2135.585629 2232.243071 0.830602205 0.812412399 0.640585211 0.726837817 0.809202929 0.797399509 0.727431855 0.774810099 0.95669941 1 11.12427842 -8.346285951 0.61825042 0.994684787 0.749913733 0.747895415 0.050666324 0.260227996 0.21409914 0.029129069 0.014178909 4.51E-09 8.346285951 -0.244771054 VRYDS(ph)SNQVK ddPTM_HeLa_CUDC101_4h_R1 3 VRYDSSNQVK 10 1 A0A087WT34;A0A087X1H1;A0A0A0MTS6;K7EIE8;O95983-2;O95983;A0A087WZ12 A0A087WT34 MBD3 Methyl-CpG-binding domain protein 3 1 0 VRYDS(0.872)S(0.128)NQVK;VRYDS(0.777)S(0.223)NQVK;VRYDS(0.894)S(0.106)NQVK ;; 138.42 0.0011741 77166000 11766.5 10930.4 11491.9 11853.9 12018.5 9636.2 9290.4 11110.1 8768.5 8756.5 TRUE FALSE FALSE 10387.24871 11267.15267 12113.18688 12337.35328 11131.9192 9452.40554 9648.73384 12374.82888 8407.058719 8704.415949 1.193330922 1.294417998 1.391613975 1.417367156 1.278881807 1.085932198 1.10848722 1.421672511 0.965838348 1 13.08753178 -8.341260589 0.830108505 1.0220541 1.275971071 0.510218615 0.113284041 0.385669428 0.561267371 0.046175921 0.026981618 4.56E-09 8.341260589 0.253916971 ENIKPNETS(ph)PSFSK ddPTM_HeLa_CUDC101_4h_R1 2 ENIKPNETSPSFSK 14 1 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHH4;A0A5F9ZHX3;F8W0B5;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 ENIKPNET(0.067)S(0.715)PS(0.218)FSK;ENIKPNET(0.166)S(0.607)PS(0.166)FS(0.061)K ; 140.77 0.0025116 45354900 6308.4 4890.6 4753.3 4646.1 4523.6 5132.5 5000.6 4620 5647.5 7023.1 TRUE FALSE FALSE 5568.938915 5041.273589 5010.277776 4835.58804 4189.90304 5034.606114 5193.474817 5145.922125 5414.70766 6981.326289 0.79769068 0.72210829 0.717668473 0.692646045 0.600158604 0.721153246 0.743909481 0.737098069 0.775598709 1 12.76928543 -8.341081973 0.553011956 1.001839097 0.69300962 0.364511774 0.077298918 0.205054522 0.135721195 0.028471895 0.013076619 4.56E-09 8.341081973 -0.308829476 ALDSNS(ph)LENDDLSAPGR ddPTM_HeLa_CUDC101_4h_R1 2 ALDSNSLENDDLSAPGR 17 0 Q32MZ4-3;Q32MZ4-2;Q32MZ4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 ALDS(0.007)NS(0.993)LENDDLSAPGR;ALDS(0.125)NS(0.875)LENDDLSAPGR ; 228.19 3.17E-33 18000400 2283.3 1951.55 1762.07 1667.28 1923.75 1799.15 1609.74 1801.83 2151.05 2461.6 TRUE FALSE FALSE 2015.655035 2011.674942 1857.332834 1735.278885 1781.838795 1764.834211 1671.828211 2006.943044 2062.382809 2446.958294 0.823739023 0.822112476 0.759037389 0.709157524 0.728185192 0.721235918 0.683227097 0.820178688 0.842835292 1 11.2567738 -8.341027523 0.403359413 1.026072877 0.717786661 0.53155902 0.060216644 0.308045898 0.110407367 0.039916614 0.01638093 4.56E-09 8.341027523 -0.308286216 FSVCVLGDQQHCDEAK ddPTM_HeLa_CUDC101_4h_R1 2 FSVCVLGDQQHCDEAK 16 0 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 0 ; ; 149.6 0.0014834 1994480 2098.41 1765.14 1763.33 1836.65 1946.97 2319.2 1764.32 1907.91 1812.96 663.68 FALSE FALSE TRUE 1852.437561 1819.521871 1858.660954 1911.556526 1803.345902 2274.965124 1832.370413 2125.098762 1738.229021 659.7324018 2.80786203 2.757969544 2.817295237 2.897472552 2.733450558 3.44831498 2.777444928 3.221152632 2.634748599 1 9.365737152 -9.44191801 0.407967119 0.259596882 3.060455465 0.200415527 0.551202928 0.413717605 0.081493109 0.508275702 0.06131013 3.61E-10 9.44191801 2.800858582 ASEIDQVVPAAQSS(ph)PINCEKR ddPTM_HeLa_CUDC101_4h_R1 1 ASEIDQVVPAAQSSPINCEKR 21 1 O94782;C9JWX4;C9JC88 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 ASEIDQVVPAAQS(0.269)S(0.731)PINCEKR 97.049 0.00017825 37445000 2808 3046.2 3042.5 2745.6 3727.9 2548.7 2731.9 2562.7 2956 1431.5 TRUE FALSE FALSE 2478.850497 3140.049811 3206.986753 2857.577435 3452.900244 2500.087794 2837.270298 2854.427409 2834.152429 1422.985374 1.74200701 2.206663447 2.253703243 2.008156575 2.426518435 1.756931476 1.993885777 2.005942901 1.9916947 1 10.47470512 -8.3410196 0.700326772 1.04984829 2.095532731 0.1299797 0.346134442 0.192011621 0.201605697 0.092963575 0.04906297 4.56E-09 8.3410196 1.045684441 HKAEEVEDETVELDVS(ph)DEEMAR ddPTM_HeLa_CUDC101_4h_R1 4 HKAEEVEDETVELDVSDEEMAR 22 1 H3BSB3;H3BNT4;Q99547 H3BSB3 MPHOSPH6 M-phase phosphoprotein 6 1 0 HKAEEVEDETVELDVS(1)DEEMAR;HKAEEVEDETVELDVS(1)DEEMAR;HKAEEVEDETVELDVS(1)DEEMAR;HKAEEVEDETVELDVS(1)DEEMAR ;;; 121.48 2.65E-07 45045800 18430 15738.1 14574.9 12757.2 17567.3 16801.8 15104.6 15505.3 16623.1 17674.4 TRUE FALSE FALSE 16269.66334 16222.97221 15362.86318 13277.49376 16271.39528 16481.33366 15687.18948 17270.36068 15937.88878 17569.27188 0.926029459 0.923371914 0.874416611 0.755722482 0.926128037 0.938077216 0.892876471 0.982986705 0.907145663 1 14.10076678 -8.33992389 0.757622578 0.992803089 0.89594809 0.042167417 0.062059058 0.538770507 0.658402071 0.024348574 0.013495922 4.57E-09 8.33992389 -0.096854999 PSQLSTPAAS(ph)PSASEPR ddPTM_HeLa_CUDC101_4h_R1 2 PSQLSTPAASPSASEPR 17 0 K7EL01;Q5XUX1;Q5XUX1-2 K7EL01 FBXW9 F-box/WD repeat-containing protein 9 1 0 PSQLS(0.001)T(0.046)PAAS(0.773)PS(0.18)ASEPR;PSQLSTPAAS(0.942)PS(0.055)AS(0.003)EPR ; 184.2 2.58E-17 0 2905.5 2337 2168.85 2245.9 1958.13 2183.29 1955.01 1941.15 2539.5 3383.9 TRUE FALSE FALSE 2564.921694 2409.0002 2286.104591 2337.49751 1813.682651 2141.647381 2030.415391 2162.12267 2434.820735 3363.772412 0.762513446 0.716160282 0.679625228 0.694903585 0.539181142 0.636680226 0.603612594 0.642767228 0.723836347 1 11.71586438 -8.339529297 0.333640257 1.066743196 0.585019649 0.38688534 0.091855709 0.28315394 0.071632997 0.054229181 0.022186709 4.58E-09 8.339529297 -0.481723547 FTATASLGVIHK ddPTM_HeLa_CUDC101_4h_R1 1 FTATASLGVIHK 12 0 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 0 75.416 0.032753 432090 772.39 448.06 436.3 471.21 524.75 570.15 544.55 597.22 470.49 410.23 FALSE FALSE TRUE 681.8516151 461.8641975 459.8876977 490.4279805 486.0402379 559.2753387 565.5534759 665.2051108 451.0962031 407.7899337 1.672065833 1.132603234 1.127756376 1.20264857 1.191888759 1.37147902 1.386874538 1.631244559 1.106197495 1 8.671682353 -9.691628171 1.577286613 1.000495415 1.376725461 0.253677992 0.186106692 0.40110792 1.802420416 0.154958638 0.034539846 2.03E-10 9.691628171 0.376230046 ALGDSS(ph)PSQAMQEYIAVVK ddPTM_HeLa_CUDC101_4h_R1 1 ALGDSSPSQAMQEYIAVVK 19 0 A0A2R8Y544;Q9BR61 A0A2R8Y544 ACBD6 Acyl-CoA-binding domain-containing protein 6 1 0 ALGDS(0.028)S(0.732)PS(0.241)QAMQEYIAVVK 97.095 0.0020035 8295400 3425 3108.1 2389.1 2885.4 3171.4 2961.4 2817 2437.2 3516.7 3321.2 TRUE FALSE FALSE 3023.526692 3203.856877 2518.261973 3003.079084 2937.45214 2904.916229 2925.652634 2714.640996 3371.740138 3301.445355 0.915819093 0.970440681 0.762775603 0.909625561 0.889747315 0.879892264 0.886173272 0.822258346 1.021292124 1 11.68888205 -8.338618779 0.347838509 1.020850431 0.856746795 0.549460178 0.049894376 1.012543329 0.276174207 0.066922585 0.027320523 4.59E-09 8.338618779 -0.164103636 FTDEEVDELYR ddPTM_HeLa_CUDC101_4h_R1 4 FTDEEVDELYR 11 0 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 0 ;;; ;;; 275.01 1.29E-84 692576000 12303.7 11170.7 10467.4 10637.8 11817.5 10420.3 10332.6 10027.3 11429.6 10343.7 FALSE FALSE TRUE 10861.47894 11514.85603 11033.29931 11071.65546 10945.74657 10221.55014 10731.13184 11168.7673 10958.46705 10282.17521 1.056340581 1.119885218 1.073051089 1.076781443 1.064536087 0.994103867 1.043663585 1.086226121 1.065773226 1 13.32785788 -8.800196304 0.9482632 1.003911636 1.062768022 0 0.036108719 0.441861191 0.785356005 0.014855991 0.00649255 1.58E-09 8.800196304 0.058856386 FTDEEVDEMYR ddPTM_HeLa_CUDC101_4h_R1 4 FTDEEVDEMYR 11 0 P24844;P24844-2 P24844 MYL9 Myosin regulatory light polypeptide 9 0 0 ;;; ;;; 245.5 1.72E-54 66734000 8401.2 7690 7204 6243.9 7239 7203.5 7051.7 7017.2 7752.5 7279.8 FALSE FALSE TRUE 7416.424071 7926.919785 7593.470031 6498.55323 6704.993392 7066.105239 7323.686431 7816.009684 7432.938669 7236.499426 1.024863492 1.095408058 1.049329183 0.898024424 0.926552052 0.976453507 1.012048229 1.080081573 1.027145617 1 12.82107626 FTDFDEVRQEIEAETDR ddPTM_HeLa_CUDC101_4h_R1 2 FTDFDEVRQEIEAETDR 17 1 P50570-3;P50570-2;P50570-5;P50570-4;P50570 P50570-3 DNM2 Dynamin-2 0 0 ; ; 116.87 0.0005597 7797600 2182.17 2144.43 2054.44 2193.1 1962.5 2067.1 1984.47 2166.73 2365.86 2414.4 FALSE FALSE TRUE 1926.379341 2210.497347 2165.509241 2282.544097 1817.730285 2027.673512 2061.011673 2413.381785 2268.338249 2400.039041 0.802645002 0.921025578 0.902280839 0.95104457 0.757375298 0.84485022 0.858740894 1.005559386 0.945125563 1 11.22884216 -9.544667456 1.302660721 1.000175457 0.869449441 0.192429484 0.070061599 0.424435561 1.287338126 0.048976913 0.011559065 2.85E-10 9.544667456 -0.130726017 TEIKEEEDQPSTSATQSS(ph)PAPGQSK ddPTM_HeLa_CUDC101_4h_R1 2 TEIKEEEDQPSTSATQSSPAPGQSK 25 1 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 1 0 TEIKEEEDQPSTSAT(0.012)QS(0.442)S(0.546)PAPGQSK;TEIKEEEDQPSTSAT(0.002)QS(0.202)S(0.796)PAPGQSK ; 156.08 3.40E-11 289150000 13938.2 10085.4 10341.6 10272.4 10280.2 10902.2 11042.5 11231.2 12268.5 15515.1 TRUE FALSE FALSE 12304.38532 10396.11922 10900.69818 10691.35287 9521.850127 10694.2587 11468.41292 12509.71441 11762.78724 15422.8155 0.797804093 0.674074019 0.706790416 0.693216675 0.617387281 0.693405086 0.743600475 0.811117426 0.762687412 1 13.91277854 -8.338186098 0.668533016 0.988970726 0.699978512 0.264224887 0.085934926 0.206550814 0.198300349 0.027476316 0.014127577 4.59E-09 8.338186098 -0.288992213 FTFIEK(ac)CNNPR ddPTM_HeLa_CUDC101_4h_R1 2 FTFIEKCNNPR 11 1 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 1 ; FTFIEK(1)CNNPR;FTFIEK(1)CNNPR 198.62 1.16E-08 2225500 683.14 590.74 346.08 756.42 638.36 488.6 540.46 805.78 715.1 238.283 FALSE TRUE FALSE 603.0633648 608.9399992 364.7901316 787.2700771 591.2694546 479.2807691 561.3057232 897.5067381 685.6232753 236.8656821 2.546014093 2.57082408 1.540071691 3.323698351 2.49622254 2.023428488 2.3697216 3.789095702 2.894565685 1 7.887925381 -9.879831824 0.346775887 1.49E-12 2.69430526 0 0.828503652 2.76699048 0.310260262 2.985133571 0.228114603 1.32E-10 9.879831824 2.69430526 ASDPAS(ph)PHIGR ddPTM_HeLa_CUDC101_4h_R1 2 ASDPASPHIGR 11 0 O95425-3;O95425;A0A6I8PIX7;O95425-2;O95425-4 O95425-3 SVIL Supervillin 1 0 ASDPAS(1)PHIGR;ASDPAS(1)PHIGR ; 106.58 0.0051155 121166000 14590.7 11125.3 11999.1 11613.2 14645.5 11925.1 12144.7 11386.5 13868.3 13950.7 TRUE FALSE FALSE 12880.40026 11468.05731 12647.80764 12086.83649 13565.13064 11697.64859 12613.12515 12682.69313 13296.6428 13867.72062 0.928804424 0.82696051 0.912032193 0.871580617 0.978180266 0.843516315 0.909531241 0.914547782 0.958819634 1 13.75944306 -8.337471052 0.894502019 0.990996427 0.896147675 0.366873389 0.042185865 0.309597185 0.51966057 0.013958457 0.00852331 4.60E-09 8.337471052 -0.094848752 CMNS(ph)VEEK ddPTM_HeLa_CUDC101_4h_R1 1 CMNSVEEK 8 0 Q13571 Q13571 LAPTM5 Lysosomal-associated transmembrane protein 5 1 0 CMNS(1)VEEK 88.942 0.030726 12404000 3770.6 3190 2807.3 3045.1 2778 2971.6 2894 2473.7 3520.8 4104.4 TRUE FALSE FALSE 3328.615984 3288.280119 2959.07113 3169.29234 2573.072475 2914.921681 3005.622549 2755.296009 3375.671134 4079.986846 0.815839881 0.805953608 0.72526487 0.776789843 0.630657051 0.714443892 0.736674568 0.675319826 0.827373043 1 11.99434879 -8.335811858 0.3133676 1.059689786 0.671807688 0.569095426 0.06371255 0.40215574 0.091330882 0.060810332 0.025184779 4.62E-09 8.335811858 -0.387882098 TSPY(ph)GSSLDLSTGSSSRPPPK ddPTM_HeLa_CUDC101_4h_R1 1 TSPYGSSLDLSTGSSSRPPPK 21 1 J3KNZ9 J3KNZ9 FBRS 1 0 T(0.107)S(0.107)PY(0.573)GS(0.107)S(0.107)LDLSTGSSSRPPPK 64.2 0.022807 12748000 1428.3 1023.2 1095.6 1002.5 1289.9 1048.1 1157.1 1172.9 1515.1 1531 TRUE FALSE FALSE 1260.876839 1054.723579 1154.83145 1043.386283 1194.746647 1028.109239 1201.729735 1306.418195 1452.646937 1521.893544 0.82849214 0.693033743 0.758812241 0.685584276 0.785039566 0.675546094 0.789627986 0.85841628 0.954499704 1 10.57165173 -8.334554584 0.73574821 0.985989215 0.747118601 0.69973022 0.057486954 0.225570325 0.260783184 0.025018529 0.013683857 4.63E-09 8.334554584 -0.238870614 FTGSFDDDPDPHRDPYGEEVDRR ddPTM_HeLa_CUDC101_4h_R1 3 FTGSFDDDPDPHRDPYGEEVDRR 23 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 0 0 ;; ;; 64.843 0.0018791 128374000 13039.2 11039.3 11522.4 11971.4 12370.9 10924.7 10356.6 11345.2 11924.3 11058.9 FALSE FALSE TRUE 11510.76474 11379.40775 12145.3358 12459.64544 11458.32335 10716.32955 10756.05753 12636.69171 11432.77531 10993.12117 1.047087953 1.035138936 1.104812328 1.133403812 1.042317571 0.97482138 0.978435275 1.149508999 1.039993568 1 13.42431343 -8.69613337 0.777430148 1.002146501 1.055884269 0.053635891 0.05632357 1.051371785 1.260361088 0.029906018 0.012337841 2.01E-09 8.69613337 0.053737769 DSS(ph)VEVR ddPTM_HeLa_CUDC101_4h_R1 1 DSSVEVR 7 0 O15371-2;O15371-3;O15371;B0QYA6;B0QYA5 O15371-2 EIF3D Eukaryotic translation initiation factor 3 subunit D 1 0 DS(0.001)S(0.999)VEVR 154.12 0.0062197 17722000 5584.1 2125.7 5530.7 6350.8 3618.5 3493.7 4159.6 1733.6 5973.6 6640.6 TRUE FALSE FALSE 4929.540263 2191.190297 5829.706371 6609.813074 3351.570464 3427.063493 4320.037165 1930.946017 5727.36568 6601.101416 0.746775417 0.331943135 0.883141464 1.001319728 0.507728976 0.519165406 0.654441872 0.292518762 0.867637886 1 12.68849105 -8.332070621 0.082254738 1.639545912 1.43E-14 0.343715405 0.200748319 20.64562424 0.792969672 9.091792752 6.40043217 4.66E-09 8.332070621 -1.639545912 FTIGDHSR ddPTM_HeLa_CUDC101_4h_R1 3 FTIGDHSR 8 0 D6RD66;O75083 D6RD66 WDR1 WD repeat-containing protein 1 0 0 ;; ;; 113.18 0.00088598 9078400 11287.9 7919.82 8788.74 9110.2 11407.3 10657.28 10650.71 8867.78 11394.49 8569.69 FALSE FALSE TRUE 9964.749473 8163.820267 9263.885869 9481.753334 10565.80621 10454.01014 11061.51145 9877.25223 10924.8043 8518.717103 1.169747669 0.958339169 1.087474294 1.113049444 1.240304858 1.227181278 1.298494987 1.159476493 1.28244713 1 13.05642047 -5.861513401 3.110635461 1.072198406 1.237346293 0.305983762 0.090709753 0.159127878 3.084240779 0.011442832 0.022227857 1.38E-06 5.861513401 0.165147886 FTLDCTHPVEDGIMDAANFEQFLQER ddPTM_HeLa_CUDC101_4h_R1 1 FTLDCTHPVEDGIMDAANFEQFLQER 26 0 P35268 P35268 RPL22 60S ribosomal protein L22 0 0 115.96 2.17E-06 63821000 934.92 720.23 875.19 670.7 979.46 828.85 1018.4 1046.7 799.21 651.88 FALSE FALSE TRUE 825.3300948 742.4194326 922.5054187 698.054045 907.2071872 813.0410672 1057.680029 1165.852097 766.2662255 648.0025888 1.273652466 1.145704424 1.423613786 1.077239593 1.400005498 1.254687992 1.632215746 1.799147283 1.182504883 1 9.339855766 -1 0.302060209 1.098240835 7.054371729 0.721084623 0.125112558 19.04437958 0.243625277 0.048906666 62.29201513 0.1 1 5.956130894 KQHY(ph)LS(ph)SEDEPDDNPDVLDS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 KQHYLSSEDEPDDNPDVLDSR 21 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 3 0 KQHY(0.974)LS(0.513)S(0.513)EDEPDDNPDVLDS(1)R 73.057 0.0035699 12749000 3088.9 1922.2 2500 2209.6 2319.3 2193.8 2143.1 1865.6 2647.5 3623.3 TRUE FALSE FALSE 2726.823824 1981.420704 2635.157562 2299.717039 2148.20986 2151.95692 2225.760085 2077.972363 2538.368929 3601.74845 0.757083362 0.550127454 0.731632872 0.638500181 0.596435284 0.597475629 0.617966556 0.576934339 0.704760192 1 11.81448171 -8.328882267 0.432541888 1.034078054 0.587957536 0.325823666 0.103335563 0.248078934 0.102158807 0.047305846 0.019935611 4.69E-09 8.328882267 -0.446120518 TEES(ph)PASDEAGEK ddPTM_HeLa_CUDC101_4h_R1 2 TEESPASDEAGEK 13 0 P05114;A6NEL0;A6NL93 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 TEES(0.954)PAS(0.046)DEAGEK;T(0.013)EES(0.928)PAS(0.059)DEAGEK ; 130.19 0.0011372 45835000 6420.5 5234.4 5189.01 4556.21 4084.66 5500.1 5154.07 4457.13 5790.9 7176 TRUE FALSE FALSE 5667.898723 5395.66566 5469.543576 4742.031937 3783.34277 5395.194756 5352.864206 4964.511663 5552.196651 7133.316833 0.794567079 0.756403478 0.766760219 0.66477237 0.530376381 0.756337463 0.75040326 0.695961189 0.778347125 1 12.80035734 -8.328119442 0.461252573 1.016034925 0.680010409 0.325636426 0.091469195 0.390953384 0.182293038 0.056970229 0.024482941 4.70E-09 8.328119442 -0.336024516 KPS(ph)PSESPEPWKPFPAVS(ph)PEPR ddPTM_HeLa_CUDC101_4h_R1 1 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 KPS(0.414)PS(0.414)ES(0.173)PEPWKPFPAVS(1)PEPR 74.429 0.014074 26468000 2264 1904.3 1765.4 1665.7 1944.4 1407.3 1117 881.43 1869.7 2069.2 TRUE FALSE FALSE 1998.617352 1962.969226 1860.842864 1733.634446 1800.965486 1380.458097 1160.083064 981.7684283 1792.630175 2056.892306 0.971668447 0.954337385 0.904686579 0.842841621 0.875575975 0.671137761 0.56399796 0.477306675 0.871523594 1 11.00625054 -4.550949506 0.522414913 0.991750942 0.187894087 0.923360374 0.047271735 0.29860279 0.066012898 0.005701029 0.137683936 2.81E-05 4.550949506 -0.803856856 down THSLCNGDS(ph)PGPVQK ddPTM_HeLa_CUDC101_4h_R1 2 THSLCNGDSPGPVQK 15 0 Q674X7-3;A0A1B0GWK2;Q674X7-4;Q674X7-2;Q674X7 Q674X7-3 KAZN Kazrin 1 0 THSLCNGDS(1)PGPVQK;THSLCNGDS(1)PGPVQK ; 260.07 7.39E-70 13479000 7037.3 6696.1 7153.7 6797.8 7814.5 6630.8 5872.1 5296 7683.3 5006.2 TRUE FALSE FALSE 6212.398362 6902.398904 7540.450661 7075.043667 7238.039904 6504.328538 6098.588864 5898.875233 7366.591122 4976.4229 1.248366244 1.387020164 1.515235102 1.421712706 1.454466401 1.307028898 1.225496504 1.185364538 1.480298453 1 12.28089338 -8.326010329 0.835437396 1.029262919 1.357161156 0 0.172539246 0.274431126 0.405032232 0.042229006 0.025053424 4.72E-09 8.326010329 0.327898238 EESIS(ph)LMK ddPTM_HeLa_CUDC101_4h_R1 1 EESISLMK 8 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 EESIS(1)LMK 106.04 0.026761 13088000 3896.2 3220 3554.6 2832.7 3136.3 3169.3 3438.1 2970.1 3689.9 3880.2 TRUE FALSE FALSE 3439.493342 3319.204383 3746.772428 2948.22975 2904.941397 3108.850883 3570.708669 3308.204178 3537.80076 3857.120398 0.891725688 0.86053948 0.971391101 0.764360312 0.75313734 0.80600307 0.925744675 0.857687559 0.917212945 1 11.91330846 -8.325891961 0.436740205 1.010065464 0.833169229 0.298999683 0.065879735 0.78853538 0.331230432 0.059740062 0.025315219 4.72E-09 8.325891961 -0.176896235 ECPDQLGPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 ECPDQLGPSPK 11 0 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 1 0 ECPDQLGPS(1)PK;ECPDQLGPS(1)PK ; 140.33 0.0013959 45637000 8370.8 7607.9 7959.2 7453.5 7478.3 6958.3 7600.7 7594.6 8104.3 6790.9 TRUE FALSE FALSE 7389.587513 7842.290381 8389.498427 7757.485947 6926.640708 6825.582021 7893.861545 8459.138566 7770.237324 6750.507425 1.094671415 1.161733465 1.24279523 1.149170789 1.026091858 1.011121326 1.169373063 1.253111512 1.15105974 1 12.72078024 -8.31902645 0.873088684 1.011984929 1.137583313 0 0.086734547 0.493799537 0.793119234 0.029190662 0.017832414 4.80E-09 8.31902645 0.125598384 YMEDST(ph)YYK ddPTM_HeLa_CUDC101_4h_R1 1 YMEDSTYYK 9 0 Q05397-5;Q05397;Q05397-7;Q05397-2;E7ESA6;H0YBP1;H0YB16;H0YBZ1;E9PEI4;Q05397-3;Q05397-4 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 YMEDS(0.317)T(0.651)Y(0.029)Y(0.004)K 163.9 0.00018387 54197000 2503.5 2539.6 2395.6 2302.2 2656.2 2397.2 2318.6 1755.5 2199.8 1826.9 TRUE FALSE FALSE 2210.043525 2617.842066 2525.113382 2396.093667 2460.257418 2351.477404 2408.029179 1955.339024 2109.123313 1816.033518 1.216961859 1.441516382 1.390455274 1.319410487 1.354742296 1.294842513 1.325982784 1.076708665 1.16139008 1 10.82657511 -8.31883095 0.89566848 1.028606692 1.315358816 0.407689013 0.103478422 0.251733072 0.424405213 0.034088575 0.021109073 4.80E-09 8.31883095 0.286752124 S(ph)SSMSYVDGFIGTWPK ddPTM_HeLa_CUDC101_4h_R1 1 SSSMSYVDGFIGTWPK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.684)S(0.153)S(0.01)MS(0.153)YVDGFIGTWPK 298.78 9.36E-123 86658000 2835.1 2775.3 2108.1 2056.3 2262.4 2244.4 2352.4 3063.3 2617.6 2763.2 TRUE FALSE FALSE 2502.773876 2860.803703 2222.070263 2140.164802 2095.507259 2201.591809 2443.132856 3412.01369 2509.70142 2746.764364 0.911171671 1.0415177 0.808977389 0.7791585 0.762900264 0.801521907 0.88945848 1.24219381 0.913693746 1 11.42351744 -8.317453701 0.637511045 0.992870597 0.88495843 0.00851634 0.139637635 1.452366605 1.277062809 0.071300311 0.036294062 4.81E-09 8.317453701 -0.107912167 DLDLLASVPS(ph)PSSSGSR ddPTM_HeLa_CUDC101_4h_R1 4 DLDLLASVPSPSSSGSR 17 0 A0A087WV97;Q8WU79-3;Q8WU79-2;Q8WU79 A0A087WV97 SMAP2 Stromal membrane-associated protein 2 1 0 DLDLLAS(0.045)VPS(0.894)PS(0.052)S(0.007)S(0.001)GSR;DLDLLASVPS(0.999)PS(0.001)SSGSR;DLDLLAS(0.001)VPS(0.905)PS(0.089)S(0.005)SGSR;DLDLLASVPS(0.996)PS(0.004)SSGSR ;;; 202.79 6.51E-17 255473000 15123.6 13226.7 12330.2 11111.66 13690.1 12793.3 13004.4 11209 13699.6 14857.4 TRUE FALSE FALSE 13350.83453 13634.19895 12996.80791 11564.84152 12680.2086 12549.28912 13505.98406 12484.98725 13134.89669 14769.02752 0.903975195 0.923161591 0.880004312 0.783046921 0.858567606 0.849703144 0.914480256 0.845349312 0.889354202 1 13.85028721 -8.316956963 0.457593964 1.006672154 0.853653162 0.237072702 0.047733418 0.46575321 0.214830405 0.030806325 0.013354903 4.82E-09 8.316956963 -0.153018992 ASPNLIGAT(ph)GANSLGK ddPTM_HeLa_CUDC101_4h_R1 1 ASPNLIGATGANSLGK 16 0 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 AS(0.366)PNLIGAT(0.631)GANS(0.003)LGK 92.247 0.035898 31710000 2160.3 1817.8 1421.8 1343.4 1915 1888.1 1675.9 1031.2 1934.4 2449.4 TRUE FALSE FALSE 1907.072909 1873.804263 1498.666809 1398.189659 1773.734265 1852.087638 1740.540024 1148.58764 1854.663213 2434.83086 0.783246566 0.769582928 0.61551167 0.574245087 0.728483565 0.760663777 0.714850486 0.471732004 0.761721581 1 11.24960584 -8.314906794 0.395606667 1.038141725 0.632669364 0.332430843 0.110259482 0.554358464 0.194019419 0.093877101 0.039457395 4.84E-09 8.314906794 -0.405472361 FVCYCEGEESGEGDR ddPTM_HeLa_CUDC101_4h_R1 1 FVCYCEGEESGEGDR 15 0 Q9BUH6;Q9BUH6-2 Q9BUH6 C9orf142 Protein PAXX 0 0 115.92 0.0079042 4434600 1081.1 1028 829.42 1309.1 1071.5 1136.4 805.67 775.82 1094.8 864.27 FALSE FALSE TRUE 954.3750968 1059.671462 874.2609541 1362.490756 992.4575797 1114.725063 836.7449618 864.1362128 1049.671881 859.1292836 1.11086319 1.233424913 1.017612798 1.585897236 1.155190026 1.297505608 0.973945339 1.005827911 1.221785709 1 9.746731437 -8.014356907 0.924535426 1.020564149 1.186649233 0 0.180144803 0.699255163 1.277688583 0.04930028 0.037898585 9.67E-09 8.014356907 0.166085084 FVDGEWYR ddPTM_HeLa_CUDC101_4h_R1 2 FVDGEWYR 8 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 0 ; ; 129.68 0.031192 59103000 8503.9 6691.5 6184.7 6194.5 6149.1 6100.7 6040.8 5816.1 6003.3 5325.5 FALSE FALSE TRUE 7507.085733 6897.657184 6519.06359 6447.138485 5695.493144 5984.339312 6273.79568 6478.181315 5755.841433 5293.823689 1.418083823 1.302963149 1.231447055 1.217860447 1.07587511 1.130437971 1.185116099 1.223724418 1.087274864 1 12.37009443 -3.534967692 4.118160644 1.198693825 3.295580932 0 0.115008896 7126.927192 1203.751118 0.022298351 137344.3136 0.000291764 3.534967692 2.096887107 FVDGLMIHSGDPVNYYVDTAVR ddPTM_HeLa_CUDC101_4h_R1 1 FVDGLMIHSGDPVNYYVDTAVR 22 0 E9PL09;P23396;P23396-2;H0YEU2;E9PSF4 E9PL09 RPS3 40S ribosomal protein S3 0 0 108.13 1.97E-05 19051000 1055.1 1197.6 1185.7 1123.6 1201.5 1284.4 1162.8 961.7 1246.1 1363.9 FALSE FALSE TRUE 931.4227774 1234.496636 1249.802529 1169.425265 1112.867739 1259.90221 1207.649586 1071.176041 1194.735231 1355.787462 0.686997633 0.910538466 0.921827767 0.862543206 0.820827578 0.929277077 0.890736652 0.790076668 0.881211299 1 10.40491532 -9.716785182 1.629322402 0.999845672 0.829792428 0.052944287 0.08004064 0.357329167 1.71510412 0.064117893 0.014105874 1.92E-10 9.716785182 -0.170053244 FVEEEDDDEEEEEENLDDQDEQGNLK ddPTM_HeLa_CUDC101_4h_R1 2 FVEEEDDDEEEEEENLDDQDEQGNLK 26 0 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 0 ; ; 224.8 3.69E-39 16670700 5249.5 4360.8 4891.1 5025.1 5806.7 4438.5 4748.9 4493.7 5209 4752.2 FALSE FALSE TRUE 4634.161568 4495.151079 5155.527661 5230.045298 5378.35131 4353.843008 4932.066664 5005.244644 4994.282815 4723.933703 0.980996318 0.951569468 1.091363255 1.107137743 1.138532344 0.921656247 1.044059247 1.059550146 1.057229658 1 12.205773 -6.759536168 24.99977117 0.987816053 1.059012842 0.206283667 0.059248351 51.9517378 682410.8234 0.008935716 0.012271906 1.74E-07 6.759536168 0.071196789 FVEGLPINDFSR ddPTM_HeLa_CUDC101_4h_R1 1 FVEGLPINDFSR 12 0 A0A5K1VW95;P40925-2;P40925;P40925-3;B8ZZ51;B9A041 A0A5K1VW95 MDH1 "Malate dehydrogenase, cytoplasmic" 0 0 127.51 0.00013511 0 722.2 781.33 419.85 716.78 584.54 790.77 585.54 524.28 617.91 754.21 FALSE FALSE TRUE 637.5448108 805.4018512 442.548361 746.0133866 541.4196488 775.6873798 608.1244739 583.961916 592.4394883 749.7239254 0.85037277 1.074264571 0.590281764 0.995050793 0.722158691 1.034630687 0.811131209 0.778902602 0.790210194 1 9.550215632 -11.48396337 0.259658377 1.293372266 0.838886916 0 0.154339544 24.28405597 0.813208344 3.907395801 0.078225849 3.28E-12 11.48396337 -0.45448535 FVFDRPLPVSR ddPTM_HeLa_CUDC101_4h_R1 1 FVFDRPLPVSR 11 1 P25786;P25786-2;F5GX11;B4DEV8 P25786 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type 0 0 84.817 0.040018 14929000 2332.4 1885 1434.7 1876.2 1774.5 1908.4 1762.2 1606.3 1753.5 1569.6 FALSE FALSE TRUE 2058.999608 1943.074616 1512.264222 1952.719546 1643.59867 1872.00045 1830.168644 1789.154699 1681.219988 1560.263949 1.319648261 1.24534994 0.969236149 1.251531541 1.053410656 1.199797285 1.172986561 1.146700018 1.077522805 1 10.60757439 -9.64431524 1.496161499 1.000630919 1.188993519 0.18901143 0.098876264 0.392313433 1.587223628 0.072364633 0.016630566 2.27E-10 9.64431524 0.1883626 FVGQSEGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 FVGQSEGKK 9 1 Q9NWH9;Q9NWH9-3;H7C3F4;H0YMM0 Q9NWH9 SLTM SAFB-like transcription modulator 0 1 ; FVGQSEGK(1)K;FVGQSEGK(1)K 120.31 0.0015536 4166900 3210.3 3797.2 3292 4004.7 2994.2 3814 3189.7 3011.9 2656.2 3828.8 FALSE TRUE FALSE 2833.9935 3914.187231 3469.975478 4168.028976 2773.323831 3741.254305 3312.727797 3354.762521 2546.710312 3806.026127 0.744606948 1.028418382 0.911705638 1.095113075 0.728666525 0.982981771 0.870390188 0.881434444 0.669125809 1 11.89406975 DALGDSLQVPVSPSSTT(ph)SSR ddPTM_HeLa_CUDC101_4h_R1 1 DALGDSLQVPVSPSSTTSSR 20 0 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5;C9JVY5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 DALGDSLQVPVS(0.016)PS(0.16)S(0.094)T(0.063)T(0.223)S(0.223)S(0.223)R 99.161 0.0041447 475320000 1277.3 1060.6 888.48 1152.3 1282.5 1137.7 979.73 1069.3 997.29 1187.8 TRUE FALSE FALSE 1127.57683 1093.275829 936.5139163 1199.295775 1187.89253 1116.000268 1017.518514 1191.02479 956.1812841 1180.734913 0.954978817 0.925928265 0.793161874 1.015719754 1.006062002 0.945174277 0.861767111 1.008714807 0.809818761 1 10.20546939 -8.311954662 1.069407384 0.992383732 0.93633018 0 0.087345337 0.7309304 1.726064991 0.019894297 0.013434614 4.88E-09 8.311954662 -0.056053552 FVINYDYPNSSEDYIHR ddPTM_HeLa_CUDC101_4h_R1 2 FVINYDYPNSSEDYIHR 17 0 P17844-2;P17844;J3KTA4 P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 0 0 ; ; 129.88 0.00024299 38940600 5548.3 4560.9 4729.4 4459.7 5461.2 5079.4 5165.1 4275.2 5353.8 5498.9 FALSE FALSE TRUE 4897.936685 4701.415923 4985.08567 4641.585842 5058.338156 4982.518908 5364.319637 4761.871487 5133.114098 5466.192298 0.896041781 0.860089742 0.911985052 0.849144265 0.92538606 0.911515482 0.98136314 0.871149646 0.939065773 1 12.4163205 -9.130637877 0.891069248 1.000005723 0.90231921 0.277784148 0.039833414 0.37676914 0.540622898 0.023615997 0.006880286 7.40E-10 9.130637877 -0.097686513 FVINYDYPNSSEDYVHR ddPTM_HeLa_CUDC101_4h_R1 2 FVINYDYPNSSEDYVHR 17 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 0 ; ; 140.77 0.0001828 22632600 6705 5841.3 5305.4 4919.2 6195.4 5611 5314.1 4801 6488 5693.1 FALSE FALSE TRUE 5919.050064 6021.263529 5592.225972 5119.826239 5738.377685 5503.979524 5519.066617 5347.526434 6220.561894 5659.237188 1.045909522 1.063970873 0.988158967 0.904684866 1.013984305 0.97256562 0.975231543 0.944920005 1.099187344 1 12.46639189 -6.531069644 24.03937933 1.025486053 0.964439216 0.511967337 0.038168612 80.40614768 235982.0777 0.005059628 0.007163838 2.94E-07 6.531069644 -0.061046837 IVEGQGQSSEVIT(ph)PPEEISR ddPTM_HeLa_CUDC101_4h_R1 1 IVEGQGQSSEVITPPEEISR 20 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 IVEGQGQS(0.002)S(0.002)EVIT(0.995)PPEEIS(0.001)R 105.67 0.0010995 5846700 799.91 572.19 636.97 761.66 556.49 541.21 738.4 694.87 932.12 799.97 TRUE FALSE FALSE 706.1457624 589.8184957 671.4065249 792.723787 515.4388414 530.887321 766.8803353 773.971192 893.6976191 795.2117429 0.887997151 0.741712507 0.844311633 0.996871329 0.648178106 0.667604982 0.964372499 0.97328944 1.123848619 1 9.635195251 -8.311913562 0.804394725 0.988251789 0.831897132 0.299460844 0.124826731 0.643021332 0.884561472 0.046739665 0.027438129 4.88E-09 8.311913562 -0.156354657 SGGLQTPECLS(ph)REGS(ph)PIPHDPEFGSK ddPTM_HeLa_CUDC101_4h_R1 1 SGGLQTPECLSREGSPIPHDPEFGSK 26 1 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 2 0 S(0.035)GGLQT(0.193)PECLS(0.89)REGS(0.875)PIPHDPEFGS(0.007)K 47.208 0.029262 42751000 5339.5 5386.1 5071.7 5023.8 7590.3 5827 5899.9 5802.3 5249.4 2622.3 TRUE FALSE FALSE 4713.611904 5552.039357 5345.891443 5228.692279 7030.378691 5715.859683 6127.461119 6462.810378 5033.01751 2606.702443 1.808266194 2.129909139 2.050825347 2.005864648 2.697039208 2.192754949 2.350656146 2.479304992 1.930798632 1 11.34801019 -8.309681273 0.296781548 0.688669618 2.533021524 0.425145877 0.330061448 0.420608717 0.088432267 0.298118191 0.127966306 4.90E-09 8.309681273 1.844351906 FVMQEEFSR ddPTM_HeLa_CUDC101_4h_R1 2 FVMQEEFSR 9 0 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 ; ; 145.72 0.0056873 80731000 3891.8 3233.8 2980.82 3072.9 3682.6 3506.3 3140.17 2967.9 2923.47 2693.46 FALSE FALSE TRUE 3435.609104 3333.429545 3141.972146 3198.226144 3410.941935 3439.423169 3261.287409 3305.753739 2802.963329 2677.43918 1.283169802 1.245006635 1.17349898 1.194509354 1.273956832 1.284594322 1.218062182 1.234669965 1.046882166 1 11.38663809 -9.32333466 0.879759124 0.988803713 1.240211414 0.838854396 0.037457048 0.195978777 0.252222052 0.033783229 0.00752395 4.75E-10 9.32333466 0.251407701 FVNVVPTFGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 FVNVVPTFGKK 11 1 E9PR30;P62861 E9PR30 FAU 40S ribosomal protein S30 0 1 FVNVVPTFGK(1)K 152.54 0.00012479 31251000 1725.6 1161.1 957.81 1183.9 1227.4 1278.8 1188.9 1054.4 824.81 486.6 FALSE TRUE FALSE 1523.327784 1196.872115 1009.592106 1232.184559 1136.857147 1254.409021 1234.756271 1174.428634 790.8109827 483.7056816 3.149286523 2.474380931 2.087203323 2.547384921 2.350307616 2.593331169 2.552701608 2.427981888 1.634901166 1 8.917985673 -9.450988619 1.151071005 0.988886939 2.566555354 0.691587171 0.31198644 0.174647716 0.409259252 0.221980585 0.053578669 3.54E-10 9.450988619 1.577668415 KCEDPDSPVT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 KCEDPDSPVTK 11 1 Q9BUB4-2;Q9BUB4 Q9BUB4-2 ADAT1 tRNA-specific adenosine deaminase 1 1 0 KCEDPDS(0.294)PVT(0.706)K 164.64 2.19E-10 0 2186.7 1908 2127.5 2027.2 2237 2511.3 1761 1733.4 2157.1 1578.8 TRUE FALSE FALSE 1930.378341 1966.783218 2242.519085 2109.877978 2071.980967 2463.401137 1828.92236 1930.723249 2068.183425 1569.409227 1.23000318 1.253199729 1.428893781 1.344377197 1.320229887 1.569635946 1.165357211 1.23022295 1.31781016 1 10.61600587 -8.30749689 0.597390971 1.006647698 1.343975114 0.047730843 0.141457731 0.391356987 0.304026768 0.05944238 0.029408432 4.93E-09 8.30749689 0.337327416 SPS(ph)KPLPEVTDEYK ddPTM_HeLa_CUDC101_4h_R1 1 SPSKPLPEVTDEYK 14 1 P05455;E7ERC4;E9PFL9;E9PGX9 P05455 SSB Lupus La protein 1 0 S(0.199)PS(0.801)KPLPEVTDEYK 86.944 0.010097 11805000 2019.6 1287.5 1298.7 1474.3 1621.2 1414.3 1088.4 1274.5 1836.9 2505.1 TRUE FALSE FALSE 1782.86555 1327.166349 1368.91165 1534.428326 1501.607306 1387.324584 1130.379953 1419.583928 1761.182205 2490.199554 0.715952883 0.532955822 0.549719659 0.616186893 0.603006817 0.557113819 0.453931473 0.570068341 0.70724541 1 11.28204564 -8.306703285 0.468347286 1.026161466 0.526998063 0.505437695 0.101164883 0.203752202 0.098691503 0.044103532 0.019470332 4.94E-09 8.306703285 -0.499163404 FVSEAELDER ddPTM_HeLa_CUDC101_4h_R1 2 FVSEAELDER 10 0 Q9GZU8;H3BQQ6;H3BTI2;H3BTP8;H3BSY6;H3BP64;H3BUL4;H3BMX9;H3BPH9;H3BPF9;H3BN22;Q6P4H7;H3BSF0 Q9GZU8 FAM192A;NIP30 Protein FAM192A 0 0 ; ; 179.51 2.37E-07 12020700 4166.1 3605.7 3434.6 3069.5 3522.1 3611.7 2706.2 3883.7 3687.1 3674.1 FALSE FALSE TRUE 3677.756073 3716.787343 3620.284865 3194.687478 3262.2817 3542.81284 2810.579041 4325.80471 3535.116177 3652.24629 1.006984683 1.017671605 0.991248831 0.874718522 0.893226097 0.970036673 0.769548058 1.184423055 0.967929295 1 11.83456834 -6.434038157 7.710422843 1.004472548 0.928382704 0.07441323 0.099083668 0.438952412 34.08053599 0.013371595 0.020432965 3.68E-07 6.434038157 -0.076089844 ESEDSETQPFDTHLEAYGPCLS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 4 ESEDSETQPFDTHLEAYGPCLSPPR 25 0 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 ESEDSETQPFDT(0.131)HLEAY(0.002)GPCLS(0.866)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAY(0.001)GPCLS(0.999)PPR;ESEDSETQPFDTHLEAY(0.017)GPCLS(0.983)PPR ;;; 140.27 7.33E-11 203701400 5429.3 6038 6147.8 4784.05 5320.8 5684.14 4753.29 3289.75 5758.6 3748.93 TRUE FALSE FALSE 4792.885684 6224.023623 6480.168664 4979.164237 4928.295185 5575.7245 4936.625988 3664.241842 5521.228071 3726.631198 1.286117523 1.670147458 1.738881129 1.336103299 1.322453155 1.496183605 1.324688633 0.983258511 1.481560095 1 11.86365634 -8.304742005 1.089735897 1.049277596 1.409452256 0 0.242851879 0.361747985 0.885888299 0.063362188 0.043300132 4.96E-09 8.304742005 0.36017466 GNRGS(ph)GGGGGGGGQGSTNYGK ddPTM_HeLa_CUDC101_4h_R1 2 GNRGSGGGGGGGGQGSTNYGK 21 1 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 0 GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK ; 145.04 3.78E-06 4638200 1152.73 878.27 1134.86 1149.5 1187.9 845.45 579.92 184.089 1195.88 1298.45 TRUE FALSE FALSE 1017.608737 905.3284577 1196.213964 1196.381579 1100.270984 829.3244499 602.2877087 205.0449476 1146.58532 1290.726762 0.788399812 0.701409845 0.926775519 0.926905379 0.852442993 0.642525184 0.466626808 0.158860073 0.888325364 1 10.33396791 -4.534351124 1.116224016 0.887708861 5.04E-14 0.890080829 0.081049597 0.311145316 0.423905529 0.015900488 0.287380595 2.92E-05 4.534351124 -0.887708861 down FVVDLSDQVAPTDIEEGMR ddPTM_HeLa_CUDC101_4h_R1 2 FVVDLSDQVAPTDIEEGMR 19 0 P35998 P35998 PSMC2 26S protease regulatory subunit 7 0 0 ; ; 187.37 3.65E-25 0 1092.5 949.76 692.8 976.2 971.57 686.41 846.9 1072.25 1050.31 1155.54 FALSE FALSE TRUE 964.4388061 979.0209799 730.2548636 1016.013655 899.8992167 673.3178729 879.5652167 1194.310606 1007.015777 1148.666797 0.839615813 0.852310681 0.635741249 0.88451556 0.783429293 0.586173358 0.765727032 1.039736335 0.876682237 1 10.16574465 -8.479455894 0.60336472 0.999111122 0.778866956 0.14797471 0.124522571 0.700094696 0.528370162 0.072856174 0.030763359 3.32E-09 8.479455894 -0.220244166 NDS(ph)PTQIPVSSDVCR ddPTM_HeLa_CUDC101_4h_R1 1 NDSPTQIPVSSDVCR 15 0 Q8TC07-2;Q8TC07-3;Q8TC07 Q8TC07-2 TBC1D15 TBC1 domain family member 15 1 0 NDS(0.854)PT(0.146)QIPVSSDVCR 191.4 2.07E-11 50705000 664.56 559.86 648.13 578.98 632.26 798.58 595.95 498.64 767.44 488.19 TRUE FALSE FALSE 586.6612842 577.108623 683.1698683 602.593307 585.6194394 783.348417 618.9359911 555.403162 735.8057984 485.2862242 1.208897461 1.189212869 1.407766869 1.241727618 1.206750594 1.614198751 1.275403999 1.144485737 1.51623055 1 8.922692097 -8.304119271 0.452531659 0.982880875 1.32872499 0 0.202425328 0.712322055 0.323298746 0.106052987 0.046414824 4.96E-09 8.304119271 0.345844115 FVYTCNECK(ac)HHVETR ddPTM_HeLa_CUDC101_4h_R1 2 FVYTCNECKHHVETR 15 1 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 1 ; FVYTCNECK(1)HHVETR;FVYTCNECK(1)HHVETR 178.22 6.63E-08 118631000 7868.1 6753.2 7927.5 6413.3 8010.6 6928.6 7137.6 7648 7753.1 2223.32 FALSE TRUE FALSE 6945.813245 6961.258087 8356.084629 6674.862095 7419.673997 6796.448499 7412.899623 8518.617406 7433.513936 2210.095594 3.14276598 3.149754294 3.780870227 3.020168953 3.357173336 3.075183045 3.354108141 3.854411289 3.363435481 1 11.10989306 -9.099484077 0.52475605 0.625438585 3.417828342 0 0.775545772 0.245557335 0.102603249 0.342351908 0.0667525 7.95E-10 9.099484077 2.792389757 FWAWDPEEER ddPTM_HeLa_CUDC101_4h_R1 2 FWAWDPEEER 10 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 0 0 ; ; 148.94 0.0030939 22668000 5506.3 5231.2 5210.1 4655.9 5073.6 4801.3 4989.4 4487.4 4983.8 4831.8 FALSE FALSE TRUE 4860.859861 5392.367072 5491.773766 4845.787727 4699.330636 4709.723202 5181.842829 4998.227477 4778.365655 4803.060239 1.012033916 1.122694033 1.143390566 1.008895888 0.978403435 0.980567173 1.078862761 1.040633935 0.994858573 1 12.22973819 -7.492369407 24.43663248 1.00530904 1.049471112 0.15472402 0.05167837 469.8489716 376332.7437 0.00974389 0.010635476 3.22E-08 7.492369407 0.044162072 FWAWDPEEERR ddPTM_HeLa_CUDC101_4h_R1 2 FWAWDPEEERR 11 1 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 0 0 ; ; 166.69 2.67E-05 27163000 5446.9 5420.8 4790.9 4840.3 5607.2 5238.9 4673.4 4936.3 5660.6 6143.5 FALSE FALSE TRUE 4808.422639 5587.808423 5049.910546 5037.708356 5193.568027 5138.976711 4853.654603 5498.228439 5427.267672 6106.958189 0.787367866 0.91499045 0.826910942 0.824912862 0.850434515 0.841495316 0.794774494 0.900321939 0.888702281 1 12.57623825 -9.422212857 1.03681735 1.004325198 0.837736357 0.30840246 0.05077255 0.23374445 0.430255332 0.029762601 0.00675149 3.78E-10 9.422212857 -0.166588841 FWEGDFHR ddPTM_HeLa_CUDC101_4h_R1 4 FWEGDFHR 8 0 B4DKY1;P49589-2;P49589;P49589-3 B4DKY1 CARS "Cysteine--tRNA ligase, cytoplasmic" 0 0 ;;; ;;; 161.02 0.00086397 33458500 21372.9 16772.1 14869.7 16393.7 16368.2 17026.8 15746.4 15811.3 15158.4 10537.7 FALSE FALSE TRUE 18867.60106 17288.82852 15673.60096 17062.30595 15160.7505 16702.04216 16353.74392 17611.19448 14533.56434 10475.02129 1.801199304 1.650481468 1.496283446 1.628856445 1.447324074 1.594463791 1.56121343 1.681256199 1.387449622 1 13.35466556 -9.398319698 1.07627911 0.993343837 1.614784183 0.500220484 0.147407904 0.165970912 0.338039106 0.079110432 0.01931977 4.00E-10 9.398319698 0.621440346 FWEVISDEHGIDPTGTYHGDSDLQLDR ddPTM_HeLa_CUDC101_4h_R1 7 FWEVISDEHGIDPTGTYHGDSDLQLDR 27 0 Q5JP53;P07437 Q5JP53 TUBB Tubulin beta chain 0 0 ;;;;;; ;;;;;; 200.04 2.38E-23 401245300 9668.63 7127.46 5787.1 5547.61 9833.95 8482.03 7240.73 7222.05 8984.51 7825.08 FALSE FALSE TRUE 8535.287848 7347.048594 6099.968131 5773.865515 9108.5191 8320.24941 7520.007382 8044.178979 8614.164695 7778.536076 1.097287171 0.944528446 0.78420516 0.742281768 1.170981148 1.069642067 0.966763837 1.034150758 1.107427492 1 12.92528295 -7.244172011 23.71690832 1.045941165 0.956597438 0.136383264 0.122139624 792.3305941 1088273.463 0.021672427 0.026499205 5.70E-08 7.244172011 -0.089343727 FWEVISDEHGIDPTGTYHGDSDLQLER ddPTM_HeLa_CUDC101_4h_R1 4 FWEVISDEHGIDPTGTYHGDSDLQLER 27 0 P68371;M0R0X0;M0QY85;M0QY37;M0QX14;M0QZL7;M0R278;M0R2D3;P04350;M0QYM7 P68371;P04350 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain 0 0 ;;; ;;; 153.59 1.39E-11 58373400 4394.38 2924.41 2814.71 2676.26 5023.38 4243.27 3682.93 3931.17 4080.15 3796.84 FALSE FALSE TRUE 3879.277438 3014.507606 2966.881737 2785.409451 4652.815265 4162.336695 3824.981844 4378.678502 3911.96449 3774.256227 1.027825671 0.798702426 0.786083816 0.738002214 1.232776734 1.102823032 1.013439898 1.160143414 1.036486199 1 11.88197665 -5.733169079 24.99982814 0.959458495 1.117415079 0.418534427 0.119730169 245.4678044 217069.4347 0.01968565 0.039365286 1.85E-06 5.733169079 0.157956584 VDALHCPPAAVVTVTPS(ph)PEGVFSSLQAK ddPTM_HeLa_CUDC101_4h_R1 1 VDALHCPPAAVVTVTPSPEGVFSSLQAK 28 0 Q6UB99 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 1 0 VDALHCPPAAVVT(0.028)VT(0.008)PS(0.952)PEGVFS(0.009)S(0.003)LQAK 78.662 1.32E-05 7614500 769.35 878.97 842.71 730.06 825.85 769.21 565.58 735.7 978.18 477.98 TRUE FALSE FALSE 679.1679593 906.0500239 888.2694517 759.8350024 764.9286908 754.5386008 587.3946101 819.4491142 937.8590064 475.1369537 1.429415149 1.906923923 1.869501929 1.599191552 1.609912016 1.588044447 1.236263788 1.72465877 1.9738709 1 8.892199606 -8.303951301 0.946114317 1.062446088 1.625880271 0 0.341341134 0.249915306 0.468122063 0.066679099 0.042875004 4.97E-09 8.303951301 0.563434183 AEAPAGPALGLPSPEAES(ph)GVDRGEPEPMEVEEGELEIVPVRR ddPTM_HeLa_CUDC101_4h_R1 2 AEAPAGPALGLPSPEAESGVDRGEPEPMEVEEGELEIVPVRR 42 2 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 0 AEAPAGPALGLPS(0.271)PEAES(0.729)GVDRGEPEPMEVEEGELEIVPVRR;AEAPAGPALGLPS(0.273)PEAES(0.727)GVDRGEPEPMEVEEGELEIVPVRR ; 62.942 3.39E-05 121602400 1671.99 1899.45 1492.22 1377.61 1883.68 1747.06 1632.9 1251.93 1789.53 1156.46 TRUE FALSE FALSE 1476.001867 1957.969803 1572.893927 1433.79489 1744.724679 1713.737741 1695.8815 1394.444651 1715.764816 1149.581324 1.283947325 1.703202515 1.368231976 1.24723224 1.517704439 1.490749462 1.475216641 1.213002178 1.492512778 1 10.16689281 -8.300467956 0.858246775 1.034439611 1.427500019 0 0.199690626 0.275883251 0.429788666 0.050584854 0.031038729 5.01E-09 8.300467956 0.393060408 MS(ph)VDAVEIETLR ddPTM_HeLa_CUDC101_4h_R1 2 MSVDAVEIETLR 12 0 P78347-2;P78347-4;P78347-3;P78347;A0A494C1K3;P78347-5 P78347-2 GTF2I General transcription factor II-I 1 0 MS(1)VDAVEIETLR;MS(1)VDAVEIETLR ; 176.99 3.39E-07 6816300 1760.25 1378.37 1291.6 1271.32 1194.96 1322.97 1586.6 959.18 1641.11 2023.61 TRUE FALSE FALSE 1553.916163 1420.835946 1361.427803 1323.169925 1106.810181 1297.736551 1647.795693 1068.369174 1573.462751 2011.573478 0.772487896 0.706330622 0.676797451 0.65777857 0.550221105 0.645135048 0.819157596 0.531111185 0.78220496 1 10.97410872 -8.300407462 0.471671008 1.016241655 0.635995983 0.438483994 0.097858852 0.350981913 0.172758738 0.057893628 0.025785377 5.01E-09 8.300407462 -0.380245672 EAQQKVPDEEENEES(ph)DNEKETEK ddPTM_HeLa_CUDC101_4h_R1 4 EAQQKVPDEEENEESDNEKETEK 23 2 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 EAQQKVPDEEENEES(0.957)DNEKET(0.043)EK;EAQQKVPDEEENEES(1)DNEKETEK;EAQQKVPDEEENEES(0.996)DNEKET(0.004)EK;EAQQKVPDEEENEES(1)DNEKETEK ;;; 109.22 8.15E-06 193678000 9140.87 7999.52 9656.79 8338.26 8992.49 8475.17 8361.85 7616.56 7973.88 6747.18 TRUE FALSE FALSE 8069.391075 8245.975729 10178.86528 8678.330284 8329.131928 8313.520253 8684.369356 8483.598403 7645.193291 6707.047473 1.203121211 1.229449435 1.517637279 1.29391216 1.241847767 1.239520115 1.294812567 1.26487824 1.139874635 1 12.7114621 -8.298072891 0.721568351 1.01750676 1.299451196 0.486174296 0.088563713 0.285885221 0.3202489 0.036880045 0.020553816 5.03E-09 8.298072891 0.281944436 QGS(ph)PGSVSK ddPTM_HeLa_CUDC101_4h_R1 2 QGSPGSVSK 9 0 O00425 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 1 0 QGS(0.955)PGS(0.027)VS(0.018)K;QGS(0.891)PGS(0.107)VS(0.002)K ; 99.732 0.017994 50756000 15389.7 4128.7 14516 14043.2 6344.1 7091.3 6716.5 3023 16745.6 21255 TRUE FALSE FALSE 13585.7427 4255.900353 15300.77887 14615.9424 5876.108382 6956.045267 6975.557655 3367.126101 16055.33928 21128.57431 0.643003285 0.201428657 0.724174695 0.691761885 0.278111921 0.329224545 0.330148052 0.159363621 0.759887489 1 14.3669078 -8.29792007 0.154138897 1.449804632 6.37E-14 0.565485936 0.178839087 3.080018725 0.25135738 1.407132221 0.787057235 5.04E-09 8.29792007 -1.449804632 KREDSAPPS(ph)SVAR ddPTM_HeLa_CUDC101_4h_R1 1 KREDSAPPSSVAR 13 2 Q9BZE4-3;Q9BZE4-2;Q9BZE4 Q9BZE4-3 GTPBP4 Nucleolar GTP-binding protein 1 1 0 KREDSAPPS(0.5)S(0.5)VAR 57.703 0.035088 9985100 2201.2 1596 2146.9 2015.6 2064.6 2262.7 2102.9 1665.5 1593.7 1671.2 TRUE FALSE FALSE 1943.178673 1645.170868 2262.967908 2097.80488 1912.298571 2219.542767 2184.009557 1855.093788 1528.007011 1661.259628 1.169701978 0.990315325 1.362200026 1.262779667 1.151113612 1.336060138 1.31467082 1.116679029 0.919788205 1 10.69806185 -8.294413668 0.334436097 0.964550259 1.268714546 0.492807969 0.10574259 1.211216873 0.315711608 0.146969121 0.062860618 5.08E-09 8.294413668 0.304164287 FYEEFDAHGR ddPTM_HeLa_CUDC101_4h_R1 1 FYEEFDAHGR 10 0 K7EIT8;A8MX75;P18074-2;P18074 K7EIT8 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit 0 0 133.75 0.00011576 0 3346.9 2699.6 2747.9 2548 3055.2 2738.2 2653.9 2271.3 2417.9 2406 FALSE FALSE TRUE 2954.581456 2782.771476 2896.459786 2651.918453 2829.823983 2685.973397 2756.261812 2529.855611 2318.233139 2391.689005 1.23535353 1.163517276 1.211052014 1.108805722 1.183190614 1.12304459 1.152433199 1.05776947 0.969287033 1 11.22381409 -9.492249891 1.241544312 1.000151097 1.163630339 0.63478764 0.050437052 0.259426586 0.716629118 0.035807459 0.008751805 3.22E-10 9.492249891 0.163479242 FYEEVHDLER ddPTM_HeLa_CUDC101_4h_R1 4 FYEEVHDLER 10 0 Q99733;Q99733-2;E9PNJ7;C9J6D1;C9JZI7;A8MXH2;E9PKT8;E9PS34;E9PNW0;E9PJJ2;P55209;F5H4R6;P55209-2;F8W020;F8W0J6;F8VXI6;F8VUX1;F8VY35;H0YIV4;F8VVB5;F8VV59;B7Z9C2;F8W118;P55209-3;H0YHC3;F8W543;H0YH88;F8VRJ2 Q99733;P55209 NAP1L4;NAP1L1 Nucleosome assembly protein 1-like 4;Nucleosome assembly protein 1-like 1 0 0 ;;; ;;; 185.33 2.90E-11 739080000 40445.6 36220 32066.8 35086.3 35080.2 33544.9 34532 32588.6 33339 35288.1 FALSE FALSE TRUE 35704.62808 37335.89527 33800.4282 36517.27097 32492.40354 32905.08692 35863.91081 36298.3545 31964.75231 35078.20481 1.017857906 1.064361631 0.963573489 1.04102451 0.926284675 0.938049341 1.022398695 1.034783698 0.911242536 1 15.0982873 -5.798538489 24.99999861 1.011588661 0.98035663 0.001649168 0.050639312 268.4758318 180917.3236 0.005814873 0.010540521 1.59E-06 5.798538489 -0.031232031 FYEEVHDLERK ddPTM_HeLa_CUDC101_4h_R1 2 FYEEVHDLERK 11 1 Q99733;Q99733-2;E9PNJ7;C9J6D1;C9JZI7;A8MXH2;E9PKT8;E9PS34;E9PNW0;E9PJJ2;P55209;F5H4R6;P55209-2;F8W020;F8W0J6;F8VXI6;F8VUX1;F8VY35;H0YIV4;F8VVB5;F8VV59;B7Z9C2;F8W118;P55209-3;H0YHC3;F8W543;H0YH88;F8VRJ2 Q99733;P55209 NAP1L4;NAP1L1 Nucleosome assembly protein 1-like 4;Nucleosome assembly protein 1-like 1 0 0 ; ; 76.228 0.032342 20105000 10144.7 13624.5 13681.1 13187.5 22192 15323.3 16392.7 23511 14577 8653.6 FALSE FALSE TRUE 8955.553644 14044.2547 14420.74165 13725.34325 20554.94037 15031.03358 17024.97193 26187.39721 13976.12989 8602.128002 1.041085839 1.632648886 1.676415608 1.595575333 2.389518078 1.747362232 1.979158172 3.0442929 1.624729356 1 13.07047788 -1 0.194649773 0.804149582 9.898757666 0.596462358 0.362433197 16.77914803 0.189927598 0.301593065 46.50367083 0.1 1 9.094608084 FYEQMNGPVAGASR ddPTM_HeLa_CUDC101_4h_R1 2 FYEQMNGPVAGASR 14 0 P29692-2;E9PQ49;P29692;P29692-4;P29692-3;E9PRY8;A0A087X1X7;E9PK01;E9PQZ1;E9PI39;E9PL71;E9PPR1;E9PL12;E9PK06;E9PK72;H0YCK7;E9PIZ1;E9PMW7;E9PN91;E9PKK3 P29692-2 EEF1D Elongation factor 1-delta 0 0 ; ; 115.29 0.011184 24872000 946.36 836.31 543.65 951.81 761.03 703.26 837.43 724.87 565.69 559.31 FALSE FALSE TRUE 835.4291154 862.0757198 573.0413635 990.6289259 704.8903331 689.8464872 869.7299556 807.3862708 542.3720188 555.9831992 1.502615756 1.550542752 1.030681079 1.781760541 1.267826679 1.240768585 1.564309779 1.452177461 0.97551872 1 9.118897478 -9.309331137 0.915728541 0.986440274 1.424985416 0.437096706 0.196777875 0.47936724 0.685043928 0.145885745 0.034488311 4.91E-10 9.309331137 0.438545142 FYFHDGVR ddPTM_HeLa_CUDC101_4h_R1 1 FYFHDGVR 8 0 H0Y8C6;O00410-2;O00410;O00410-3 H0Y8C6 IPO5 Importin-5 0 0 84.568 0.033749 20946000 6478.9 4218.6 3164.2 4719.1 4462.2 4652.8 4068.4 3645.1 3454.3 2205 FALSE FALSE TRUE 5719.453163 4348.570066 3335.266223 4911.565296 4133.032396 4564.055592 4225.319551 4060.04345 3311.912292 2191.884562 2.609377 1.98394119 1.521643193 2.240795606 1.885606782 2.082251808 1.927710804 1.852307152 1.510988466 1 11.0979561 -9.53573331 1.299309312 1.000464019 2.072398101 0.459715467 0.307709155 0.234727422 0.710172027 0.22080393 0.052736711 2.91E-10 9.53573331 1.071934082 FYGDEEK(ac)DK ddPTM_HeLa_CUDC101_4h_R1 2 FYGDEEKDK 9 1 P27797;K7EJB9 P27797 CALR Calreticulin 0 1 ; FYGDEEK(1)DK;FYGDEEK(1)DK 153.05 0.0015967 14324400 9070.1 3210.7 3355.2 2584.8 8267.4 6794.6 7866.7 6097.5 6686.6 4859.4 FALSE TRUE FALSE 8006.916627 3309.617861 3536.592261 2690.219316 7657.530373 6665.004326 8170.121254 6791.614753 6410.975518 4830.496073 1.65757647 0.68515072 0.732138523 0.556924025 1.5852472 1.379776368 1.691362777 1.405987015 1.327187813 1 12.23795564 FYHDWNDKEIEVLNK ddPTM_HeLa_CUDC101_4h_R1 2 FYHDWNDKEIEVLNK 15 1 J3KQ32;Q9NTK5;Q9NTK5-2;C9JCJ9;Q9NTK5-3 J3KQ32;Q9NTK5-3 OLA1 Obg-like ATPase 1 0 0 ; ; 112.02 0.0012273 61997000 12694.2 11853.8 11989 11532.1 13200.3 12467.8 11821.4 12442.9 12305.9 12465.4 FALSE FALSE TRUE 11206.20512 12219.00153 12637.1616 12002.42888 12226.54017 12229.99749 12277.35536 13859.34944 11798.64559 12391.25525 0.904363997 0.986098768 1.019845153 0.968620906 0.986707152 0.986986164 0.990808043 1.118478247 0.952175172 1 13.59703472 -1.00000001 0.884469993 0.963242882 68.84695656 0.645193235 0.030798766 474.3963158 1.070696466 0.006453283 64966.57034 0.099999998 1.00000001 67.88371368 KPS(ph)PEPEGEVGPPK ddPTM_HeLa_CUDC101_4h_R1 4 KPSPEPEGEVGPPK 14 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK;KPS(1)PEPEGEVGPPK ;;; 146.1 0.00070794 432765000 24235.6 19317.9 20651.8 19232.6 20396.6 18930.5 18696.2 19938.4 21983 24269.3 TRUE FALSE FALSE 21394.73971 19913.0616 21768.29878 20016.98856 18891.98345 18569.43225 19417.3187 22208.10686 21076.85144 24124.94512 0.886830606 0.825413757 0.902314955 0.82972162 0.783089178 0.76971915 0.804864782 0.920545384 0.87365386 1 14.55823804 -8.29078997 0.44068934 1.01142586 0.815737584 0.241845465 0.058526368 0.478452937 0.207571484 0.040016815 0.017616103 5.12E-09 8.29078997 -0.195688276 FYWGHK ddPTM_HeLa_CUDC101_4h_R1 2 FYWGHK 6 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 0 ; ; 104.03 0.020054 28117000 16152.1 12784.7 11732.5 13901.5 12592.7 12007.6 11603.5 12397.7 12710.4 7224.5 FALSE FALSE TRUE 14258.77532 13178.58145 12366.79444 14468.46326 11663.76161 11778.57504 12051.05088 13809.00405 12186.47193 7181.528353 1.985479222 1.83506641 1.722028213 2.014677454 1.624133616 1.64012094 1.678062146 1.922850315 1.696919003 1 12.81007519 -9.336991712 0.978338832 0.98343561 1.804746602 0.174555393 0.248368693 0.18455184 0.306104945 0.109200883 0.026506228 4.60E-10 9.336991712 0.821310992 GAAAHPDSEEQQQR ddPTM_HeLa_CUDC101_4h_R1 1 GAAAHPDSEEQQQR 14 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 166.04 2.79E-11 0 819.28 532.46 534.25 771.88 617.58 531.38 562.43 406.5 648.85 847.04 FALSE FALSE TRUE 723.2452403 548.8644615 563.133171 803.3606028 572.0223538 521.2448118 584.1231135 452.7743169 622.1041284 842.0017684 0.858959289 0.651856661 0.668802836 0.954107976 0.679360038 0.619054296 0.693731457 0.537735589 0.738839456 1 9.717679453 -5.130501567 0.086106195 1.349131472 3.49E-09 0.200109347 0.127046992 22.77217165 0.440556423 2.163730433 5.096093906 7.40E-06 5.130501567 -1.349131468 GAADACTTEK(ac)SNK ddPTM_HeLa_CUDC101_4h_R1 2 GAADACTTEKSNK 13 1 Q9Y3Y4-2;Q9Y3Y4 Q9Y3Y4-2 PYGO1 Pygopus homolog 1 0 1 ; GAADACTTEK(1)SNK;GAADACTTEK(1)SNK 265.72 3.93E-53 3160700 1540.91 1478.97 1997.57 1752.17 2358.9 1768.12 1702.26 1961.99 904.67 960.45 FALSE TRUE FALSE 1360.286866 1524.535313 2105.564677 1823.631066 2184.888647 1734.396057 1767.916738 2185.335011 867.3791197 954.7372007 1.424776226 1.59681147 2.20538665 1.910086948 2.288471262 1.816621428 1.85173128 2.288938788 0.908500391 1 9.898959864 -7.396347006 0.804286245 1.09737033 2.065729095 0.823243102 0.198256112 0.160230835 0.214788384 0.049402932 0.054160349 4.01E-08 7.396347006 0.968358765 GEPNVS(ph)YICSR ddPTM_HeLa_CUDC101_4h_R1 2 GEPNVSYICSR 11 0 P49841;P49841-2;A0A3B3ITW1;A8MT37;P49840 P49841 GSK3B;GSK3A Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha 1 0 GEPNVS(0.751)Y(0.248)ICSR;GEPNVS(0.754)Y(0.242)ICS(0.004)R ; 98.368 0.0019069 14906000 2725.6 2353.61 2631.16 2510.3 2773.04 2690.1 2231.72 2686.5 2827.9 2033.51 TRUE FALSE FALSE 2406.1093 2426.121934 2773.408468 2612.680884 2568.478364 2638.790825 2317.798188 2992.320301 2711.332765 2021.414592 1.190309652 1.200209964 1.372013678 1.292501249 1.270634126 1.305417916 1.146621874 1.480310033 1.341304637 1 10.98114953 -8.290488335 0.437204804 0.978805308 1.313779235 0 0.133475556 0.490054685 0.209447405 0.070042301 0.030777948 5.12E-09 8.290488335 0.334973926 LASS(ph)VLR ddPTM_HeLa_CUDC101_4h_R1 2 LASSVLR 7 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 1 0 LAS(0.039)S(0.961)VLR;LAS(0.49)S(0.51)VLR ; 115.49 0.012815 23181000 8482.8 9055.7 6902.2 7455.6 7937 8100.1 7461.2 6864.2 6691.2 6798.5 TRUE FALSE FALSE 7488.459043 9334.695383 7275.35381 7759.671594 7351.503323 7945.604088 7748.980983 7645.592782 6415.385904 6758.06222 1.108077848 1.381268044 1.076544366 1.148209552 1.087812317 1.175722246 1.146627647 1.131329149 0.949293702 1 12.72239392 -8.290313601 1.18415938 1.020086562 1.157301937 0.406748131 0.084234949 0.335953675 0.964945482 0.022749619 0.016155778 5.12E-09 8.290313601 0.137215375 NSPTFKS(ph)FEEK ddPTM_HeLa_CUDC101_4h_R1 1 NSPTFKSFEEK 11 1 H0YC42;P55327-2;P55327-4;P55327;P55327-7;P55327-5;P55327-6;P55327-3;E5RK35 H0YC42 TPD52 Tumor protein D52 1 0 NSPTFKS(1)FEEK 113.59 0.029804 41471000 1109.8 776.27 615.94 762.11 730.81 863.25 870.42 1035.2 656.39 1313.4 TRUE FALSE FALSE 979.7109263 800.1859586 649.2395795 793.1921399 676.8996023 846.7849445 903.992391 1153.042984 629.3333264 1305.587838 0.750398324 0.612893239 0.497277594 0.607536404 0.518463471 0.648585196 0.692402582 0.883160022 0.482030629 1 10.35048381 -8.288446495 0.803375389 0.971558564 0.632044363 0 0.185289235 0.271517505 0.373681042 0.042486305 0.02537838 5.15E-09 8.288446495 -0.339514201 KPEKPLFSSASPQDSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 KPEKPLFSSASPQDSSPR 18 2 Q5VW31;O00712;O00712-4;A0A1B0GW37;U3KQE8;A0A0A0MRX8;A0A1B0GU97;A0A2R8Y7V8;Q5VW30;Q5VW27;A0A1B0GWI9;A0A1B0GWJ4;A0A1B0GWB8;A0A1B0GVN4;Q5VW26;O00712-5;O00712-6 Q5VW31 NFIB Nuclear factor 1 B-type;Nuclear factor 1 1 0 KPEKPLFS(0.005)S(0.154)AS(0.057)PQDS(0.392)S(0.392)PR 88.768 0.0047688 65171000 2458.3 2313.7 1903.7 2080 2022.7 2041.9 1749.2 2143.2 2497.9 2483.5 TRUE FALSE FALSE 2170.141801 2384.982355 2006.61978 2164.831391 1873.489451 2002.95416 1816.66723 2387.173225 2394.935505 2468.728032 0.879052602 0.966077399 0.812815245 0.876901531 0.758888556 0.811330424 0.735871755 0.966964848 0.97010909 1 11.26955219 -8.287765333 0.321522218 1.027276387 0.807388109 0.409146762 0.069658718 1.205947322 0.294551589 0.104638845 0.04523915 5.16E-09 8.287765333 -0.219888278 GAAIPAK(ac)GAK ddPTM_HeLa_CUDC101_4h_R1 2 GAAIPAKGAK 10 1 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 ; GAAIPAK(1)GAK;GAAIPAK(1)GAK 153.04 0.00040081 9875300 18567.6 14518 10517.5 21620 18671 18233.4 16232.3 14730.3 4315.4 1558.28 FALSE TRUE FALSE 16391.13407 14965.28237 11086.10786 22501.75705 17293.67753 17885.62827 16858.38525 16407.13781 4137.517385 1549.011281 10.58167508 9.66118359 7.156892915 14.52652884 11.16433285 11.54648032 10.88331987 10.59200666 2.671069885 1 10.59713194 -9.068183598 0.558606761 1.10E-17 11.16466697 0.815851147 1.706708811 0.342198451 0.167972431 1.964975856 0.413251311 8.55E-10 9.068183598 11.16466697 PLSPDS(ph)RAS(ph)SLS(ph)ESS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 1 PLSPDSRASSLSESSPPK 18 1 Q9UHB6-4;Q9UHB6-5;Q9UHB6;F8VQE1;Q9UHB6-2;F8VS07;Q9UHB6-3;F8VRN8 Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 4 0 PLS(0.376)PDS(0.624)RAS(0.505)S(0.505)LS(0.587)ES(0.577)S(0.825)PPK 65.365 0.019494 30583000 61.347 0 0 0 0 0 0 0 105.71 153.7 TRUE FALSE FALSE 54.15599766 0 0 0 0 0 0 0 101.3525891 152.7857856 0.354457042 0 0 0 0 0 0 0 0.663363995 1 7.255366518 -8.287204207 0.606043605 0.981135578 6.16E-28 0.898055769 0.108676397 0.100151052 0.080387092 0.044049255 0.022388021 5.16E-09 8.287204207 -0.981135578 TCPSLS(ph)PTSPLNNK ddPTM_HeLa_CUDC101_4h_R1 2 TCPSLSPTSPLNNK 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 0 TCPS(0.003)LS(0.441)PT(0.441)S(0.115)PLNNK;TCPSLS(0.972)PT(0.022)S(0.007)PLNNK ; 239.61 9.04E-44 23023900 2894.4 2845.5 2831.1 2767.1 2834.1 2696.8 2437.4 2606.8 2433.97 2126.47 TRUE FALSE FALSE 2555.12282 2933.166482 2984.15783 2879.954298 2625.034089 2645.363033 2531.411334 2903.547575 2333.640726 2113.821662 1.208769342 1.387613031 1.411735854 1.362439581 1.241842742 1.251459894 1.197551988 1.373601012 1.103991301 1 11.04563795 -8.285953193 0.859200763 1.026670809 1.309678718 0.638486447 0.076339073 0.22166199 0.346578559 0.029113605 0.018064686 5.18E-09 8.285953193 0.283007909 PASVDGSPVS(ph)PSTNR ddPTM_HeLa_CUDC101_4h_R1 2 PASVDGSPVSPSTNR 15 0 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 PASVDGS(0.143)PVS(0.833)PS(0.012)T(0.012)NR;PASVDGS(0.167)PVS(0.602)PS(0.116)T(0.116)NR ; 115.83 0.0014452 14439000 3155.6 2613.6 2355.9 2630.3 2122.36 1931.35 2178.89 2009.99 2365.6 3709.6 TRUE FALSE FALSE 2785.705352 2694.121918 2483.26708 2737.575003 1965.797731 1894.512717 2262.930517 2238.799137 2268.088967 3687.535134 0.755438321 0.730602373 0.673421944 0.742386148 0.533092611 0.513761265 0.613670225 0.607126185 0.615069114 1 11.84844108 -8.285114158 0.243537424 1.129957736 0.510644211 0.044936391 0.130276972 0.690915434 0.107386297 0.155232571 0.072232217 5.19E-09 8.285114158 -0.619313525 (ac)MNT(ph)SPGTVGSDPVILATAGYDHTVR ddPTM_HeLa_CUDC101_4h_R1 1 MNTSPGTVGSDPVILATAGYDHTVR 25 0 H3BQ74;I3L2E7;H3BR38;H3BM50;H3BPU5;H3BR25;H3BPT1;H3BN58;H3BSZ4;A0A0A0MR05;Q9BVC4-5;Q9BVC4 H3BQ74 MLST8 Target of rapamycin complex subunit LST8 1 0 MNT(0.319)S(0.319)PGT(0.319)VGS(0.042)DPVILATAGYDHTVR 56.947 7.67E-05 0 290.6 292.46 398.18 318.62 232.28 233.47 285.76 130.89 142.35 203.96 TRUE FALSE FALSE 256.5363085 301.4703459 419.7068152 331.6147008 215.1451672 229.0169487 296.7818589 145.7899885 136.4822727 202.7468368 1.265303629 1.48692996 2.070102901 1.635609738 1.061151782 1.129571007 1.463805125 0.719074047 0.673165978 1 7.663535596 -8.283922507 1.16754569 1.050054198 1.375437129 0.201784937 0.362981858 0.636557353 1.780478802 0.101645125 0.072102424 5.20E-09 8.283922507 0.325382932 LRPVS(ph)PEEIR ddPTM_HeLa_CUDC101_4h_R1 2 LRPVSPEEIR 10 1 J3KNG6;Q08AE8-4;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8;K7EMJ7 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 LRPVS(1)PEEIR;LRPVS(1)PEEIR ; 84.734 0.020461 28867000 5397.4 5472.6 4854.6 5299.6 5583.1 5521.8 4872.6 4059.5 5417.4 3905.8 TRUE FALSE FALSE 4764.724954 5641.204319 5117.05436 5515.740595 5171.245836 5416.480865 5060.537814 4521.617071 5194.092479 3882.568128 1.227209619 1.452956943 1.317956103 1.420642321 1.33191374 1.395076837 1.303399618 1.164594393 1.337798155 1 11.92279552 -8.280475308 0.803361604 1.025373309 1.342412661 0.018126159 0.126574834 0.217314921 0.299355796 0.031661782 0.019028287 5.24E-09 8.280475308 0.317039352 GAAPNVVYTYTGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 GAAPNVVYTYTGKR 14 1 F8WJN3;Q16630-3;Q16630;Q16630-2;F8W084;A0A3B3ISW1 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 0 1 GAAPNVVYTYTGK(1)R 231.67 1.29E-34 1904000 138.84 286.88 208.23 0 350.38 191.31 254.13 250.37 275.52 163.66 FALSE TRUE FALSE 122.5653857 295.7184328 219.4875437 0 324.5331655 187.6610805 263.9318792 278.8711088 264.162949 162.686543 0.753383675 1.817719076 1.349143817 0 1.994837184 1.153513235 1.62233381 1.714162115 1.623754147 1 7.34595111 -3.830024778 0.373678784 0.907366457 2.710405717 0.003843626 0.56755868 8.953596918 0.679314829 0.148229293 7.728685296 0.000147902 3.830024778 1.803039259 ELSNSVSTYRPFGLGSES(ph)PYK ddPTM_HeLa_CUDC101_4h_R1 2 ELSNSVSTYRPFGLGSESPYK 21 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 ELSNSVS(0.021)T(0.104)Y(0.019)RPFGLGS(0.021)ES(0.714)PY(0.121)K;ELSNS(0.001)VS(0.008)T(0.006)Y(0.001)RPFGLGS(0.151)ES(0.775)PY(0.058)K ; 78.794 0.0011374 57425000 1765.99 1010.28 1338.86 1527.76 1178.99 1405.26 1308.6 1141.99 1414.26 2000.23 TRUE FALSE FALSE 1558.983329 1041.405529 1411.242821 1590.068656 1092.018257 1378.457007 1359.07314 1271.989526 1355.963604 1988.332543 0.784065691 0.523758228 0.709761969 0.799699558 0.549213088 0.693272869 0.683524064 0.639726755 0.681960173 1 10.95734335 -8.278545285 0.679919919 0.987161724 0.658253376 0.065903926 0.124054451 0.252140369 0.252885533 0.037483178 0.020511501 5.27E-09 8.278545285 -0.328908348 AIGGIILTAS(ph)HNPGGPNGDFGIK ddPTM_HeLa_CUDC101_4h_R1 4 AIGGIILTASHNPGGPNGDFGIK 23 0 A0A3B3ITK7;P36871;P36871-2 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 1 0 AIGGIILT(0.016)AS(0.984)HNPGGPNGDFGIK;AIGGIILTAS(1)HNPGGPNGDFGIK;AIGGIILT(0.201)AS(0.799)HNPGGPNGDFGIK;AIGGIILT(0.243)AS(0.757)HNPGGPNGDFGIK ;;; 184.14 7.35E-14 6984409000 8693.73 6967.6 7844.06 6434.25 8117.66 7604.52 7610.22 6743.39 7082.64 8027.8 TRUE FALSE FALSE 7674.664148 7182.263497 8268.133611 6696.666526 7518.836394 7459.476451 7903.748735 7511.03026 6790.690581 7980.050289 0.961731301 0.900027348 1.036100439 0.839175981 0.942204137 0.934765594 0.990438462 0.941225931 0.850958369 1 12.96218212 -8.277492863 0.729734074 0.996748382 0.94094336 0 0.06692149 0.762162149 0.87499993 0.019339769 0.011035657 5.28E-09 8.277492863 -0.055805022 QSS(ph)PAMPHK ddPTM_HeLa_CUDC101_4h_R1 2 QSSPAMPHK 9 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 QS(0.112)S(0.888)PAMPHK;QS(0.163)S(0.837)PAMPHK ; 81.625 0.032066 22301100 9614.7 7502.4 7335.4 8225.2 9186.6 7775.3 7367.5 8109.4 8726 9277.3 TRUE FALSE FALSE 8487.679441 7733.540051 7731.973912 8560.659208 8508.92282 7626.999107 7651.666943 9032.541317 8366.310587 9222.118207 0.920361163 0.83858609 0.838416266 0.928274721 0.922664688 0.827033327 0.829708183 0.979443238 0.907200537 1 13.17088244 -8.276731536 0.826688577 0.990629062 0.87924228 0.136287162 0.05569442 0.354576835 0.515869011 0.018183208 0.011130186 5.29E-09 8.276731536 -0.111386782 KSS(ph)PSTGSLDSGNESK ddPTM_HeLa_CUDC101_4h_R1 3 KSSPSTGSLDSGNESK 16 1 A0A0U1RQT1;A0A087X1H5;Q15057 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 KS(0.031)S(0.963)PS(0.004)T(0.001)GSLDSGNESK;KS(0.212)S(0.709)PS(0.076)T(0.003)GSLDSGNESK;KS(0.003)S(0.887)PS(0.096)T(0.011)GS(0.003)LDSGNESK ;; 181.75 2.55E-10 35157900 8097.7 6466.3 6406.2 6337 6861.5 6814.6 6109.9 6855.8 6678.8 8105.8 TRUE FALSE FALSE 7148.499881 6665.519039 6752.53855 6595.450251 6355.340815 6684.622859 6345.56089 7636.23656 6403.497037 8057.586341 0.88717633 0.827235199 0.838034898 0.818539197 0.78874002 0.82960611 0.787526267 0.947707693 0.794716528 1 12.97613203 -8.275474975 0.623882541 0.995154345 0.826308696 0 0.075276499 0.281107019 0.239211154 0.021262067 0.0111031 5.30E-09 8.275474975 -0.168845649 RT(ph)TSPSSDTDLLDR ddPTM_HeLa_CUDC101_4h_R1 1 RTTSPSSDTDLLDR 14 1 Q96QT6-5;Q96QT6-3;Q96QT6;C9J9G2;Q96QT6-2;K7ENU0;K7ERZ4;K7EJ43 Q96QT6-5 PHF12 PHD finger protein 12 1 0 RT(0.749)T(0.216)S(0.034)PSSDTDLLDR 75.743 0.0032181 0 6382.4 3341.9 5160.7 5000.7 4102.4 3418 3567.3 1156.4 6741.7 5812 TRUE FALSE FALSE 5634.264747 3444.859978 5439.703052 5204.650161 3799.774125 3352.807345 3704.891956 1288.039902 6463.804273 5777.429966 0.975219913 0.596261659 0.941543746 0.900859066 0.657692806 0.580328514 0.641269903 0.222943404 1.118802705 1 12.49621215 -4.530975095 0.386670514 0.997313634 2.13E-15 0.727425598 0.133864255 1.763893144 0.208390701 0.037060692 0.785118496 2.94E-05 4.530975095 -0.997313634 down NSSSSSS(ph)PSERPR ddPTM_HeLa_CUDC101_4h_R1 1 NSSSSSSPSERPR 13 1 B7WPE2;Q32P44;G3V1D0;H0Y3M3;Q32P44-2 B7WPE2 EML3 Echinoderm microtubule-associated protein-like 3 1 0 NSSSS(0.003)S(0.04)S(0.929)PS(0.027)ERPR 77.324 0.020682 726890 358.12 125.5 226.28 193.35 265.16 232.94 388.72 101.44 335.92 482.28 TRUE FALSE FALSE 316.1417165 129.3665062 238.5133813 201.2356487 245.5996751 228.4970576 403.7130606 112.9875196 322.0732354 479.4113771 0.659437242 0.269844464 0.497512977 0.41975568 0.512294215 0.476620015 0.842101543 0.235679679 0.671809746 1 8.905120336 -8.271166027 0.840753767 0.958162396 0.483764573 0.330332421 0.186199474 0.264257775 0.397170774 0.057713396 0.035791362 5.36E-09 8.271166027 -0.474397824 SDSPVPT(ph)APTSGGPKPSTASAVPELATDPELEKK ddPTM_HeLa_CUDC101_4h_R1 3 SDSPVPTAPTSGGPKPSTASAVPELATDPELEKK 34 2 B4E349;F5H6D8;B4DTN4;Q86U44 B4E349 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 1 0 S(0.023)DS(0.066)PVPT(0.208)APT(0.208)S(0.187)GGPKPS(0.06)T(0.06)AS(0.187)AVPELATDPELEKK;S(0.021)DS(0.052)PVPT(0.273)APT(0.238)S(0.209)GGPKPS(0.069)T(0.069)AS(0.069)AVPELATDPELEKK;S(0.013)DS(0.041)PVPT(0.569)APT(0.133)S(0.133)GGPKPS(0.037)T(0.037)AS(0.037)AVPELATDPELEKK ;; 65.899 0.00018017 479080000 13088.1 10418.1 10434.4 9657.8 11108.9 10420.9 11295.4 12264.5 12606.5 12730.4 TRUE FALSE FALSE 11553.93276 10739.06931 10998.51523 10051.68683 10289.41858 10222.13869 11731.06736 13660.64111 12086.85473 12654.67901 0.913016659 0.848624394 0.869126369 0.794305949 0.813092024 0.807775423 0.927014217 1.079493292 0.955129302 1 13.62738329 -8.267270888 0.866094704 0.988252147 0.871702695 0.186428052 0.079134627 0.532541554 0.846934103 0.028639274 0.018085814 5.40E-09 8.267270888 -0.116549452 GADEDDEKEWGDDEEEQPSK ddPTM_HeLa_CUDC101_4h_R1 3 GADEDDEKEWGDDEEEQPSK 20 1 A0A499FI31;Q15020-4;Q15020 A0A499FI31 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 0 0 ;; ;; 171.29 2.80E-09 21868000 7322.1 6322.1 5858.8 6807.6 6718.5 6682.9 6316.6 6457.4 7105.7 6420.8 FALSE FALSE TRUE 6463.814538 6516.876407 6175.54445 7085.243353 6222.88964 6555.434817 6560.233378 7192.484314 6812.800038 6382.608796 1.01272297 1.021036478 0.967558039 1.110085794 0.974975882 1.027077646 1.027829464 1.126887852 1.067400534 1 12.63993051 HGRPGIGATHSS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 HGRPGIGATHSSR 13 1 K7EM56;A0A0B4J2B4;S4R417;K7EQJ5;K7ELC2;P62841 K7EM56 RPS15 40S ribosomal protein S15 1 0 HGRPGIGAT(0.002)HS(0.186)S(0.812)R 63.682 0.031686 1136200 605.9 356.47 503.32 517.95 531.81 506.79 527.51 327.93 514.33 629.37 TRUE FALSE FALSE 534.8773205 367.4524182 530.5310017 539.0742398 492.5794358 497.1238251 547.8562374 365.2602257 493.1290997 625.6264792 0.854946743 0.587335144 0.847999596 0.861655089 0.787337896 0.794601638 0.875692215 0.583831148 0.788216477 1 9.289157765 -8.264353544 0.915384898 0.979795951 0.776585289 0.061008333 0.11752832 0.347035356 0.612901951 0.032757391 0.021300102 5.44E-09 8.264353544 -0.203210662 AKS(ph)PTPESSTIASYVTLRK ddPTM_HeLa_CUDC101_4h_R1 1 AKSPTPESSTIASYVTLRK 19 2 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;Q9HAU0-5;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 AKS(0.496)PT(0.496)PES(0.006)S(0.001)TIASYVTLRK 56.039 0.017521 48943000 4001.2 3551.1 3760 3834.8 4394.4 3843.1 2988.3 2846.9 3761.5 3210.8 TRUE FALSE FALSE 3532.185401 3660.505182 3963.276973 3991.199719 4070.233867 3769.799271 3103.559732 3170.979588 3606.449378 3191.702019 1.106677685 1.146881871 1.241744044 1.250492589 1.275254971 1.18112507 0.972383924 0.993507404 1.129945514 1 11.64011025 -8.263371938 0.908969252 1.01581049 1.154766591 0.05497458 0.102843005 0.561573795 0.978801209 0.036196541 0.023473345 5.45E-09 8.263371938 0.138956101 GADFLVTEVENGGSLGSK ddPTM_HeLa_CUDC101_4h_R1 1 GADFLVTEVENGGSLGSK 18 0 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BQ34 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 137.8 3.92E-05 0 1263.2 1121.5 972.71 849.02 1559.4 1357.3 1071.6 1109.6 1488.1 1269.5 FALSE FALSE TRUE 1115.129611 1156.052086 1025.297645 883.6467054 1444.366169 1331.411764 1112.931971 1235.912379 1426.759888 1261.948958 0.883656668 0.916084663 0.812471565 0.700223809 1.144551973 1.05504407 0.881915203 0.979367962 1.130600314 1 10.30143784 -3.896638665 15.74368774 0.934295915 2.890629904 0 0.133007825 11916159.22 15044989.47 0.016639321 818768928.7 0.000126871 3.896638665 1.956333989 HGGSPQPLATTPLSQEPVNPPS(ph)EASPTR ddPTM_HeLa_CUDC101_4h_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HGGSPQPLATTPLSQEPVNPPS(0.609)EAS(0.294)PT(0.098)R 116.96 3.00E-11 15485000 3968.4 2781.7 3019.3 2578.7 3451.2 3354.3 2848.9 2539.5 3518.3 4414.9 TRUE FALSE FALSE 3503.230168 2867.40088 3182.532491 2683.870532 3196.611852 3290.322316 2958.783027 2828.586415 3373.274185 4388.639978 0.798249614 0.653368901 0.725175113 0.611549488 0.72838325 0.749736213 0.674191331 0.644524597 0.76863771 1 12.09955821 -8.262538241 0.590501448 0.996085552 0.677761318 0.388452815 0.081831855 0.187127614 0.143690132 0.026435514 0.013551541 5.46E-09 8.262538241 -0.318324234 GADMSVPDEK ddPTM_HeLa_CUDC101_4h_R1 1 GADMSVPDEK 10 0 Q9P2R3;Q9P2R3-2;Q9P2R3-4 Q9P2R3 ANKFY1 Rabankyrin-5 0 0 116.25 0.033401 90805000 3000.4 2972 3158.4 2991 3129.1 2704.6 2761.3 2761.3 2814.4 1273.7 FALSE FALSE TRUE 2648.69766 3063.563797 3329.152658 3112.985908 2898.272527 2653.014261 2867.804266 3075.63523 2698.389241 1266.123976 2.091973386 2.419639669 2.629404957 2.458673849 2.289090628 2.095382689 2.265026428 2.429173832 2.131220396 1 10.30620296 -8.700765411 0.639275755 0.980963054 2.370678822 0.254898955 0.369053649 0.176624909 0.139435424 0.124243337 0.043722152 1.99E-09 8.700765411 1.389715768 LGHVVMGNNAVS(ph)PYQQVIEK ddPTM_HeLa_CUDC101_4h_R1 2 LGHVVMGNNAVSPYQQVIEK 20 0 P60228;H0YAW4;E5RGA2 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E 1 0 LGHVVMGNNAVS(1)PYQQVIEK;LGHVVMGNNAVS(1)PYQQVIEK ; 150.91 1.07E-05 79895000 6962.8 5726.9 5224.2 5421.4 6568.8 5819.1 5396.9 4702.6 5921.6 6828.6 TRUE FALSE FALSE 6146.631139 5903.339001 5506.636054 5642.508125 6084.232711 5708.110363 5605.060241 5237.924975 5677.509142 6787.983184 0.905516554 0.86967496 0.811233014 0.831249573 0.89632407 0.84091404 0.825732782 0.771646722 0.836405894 1 12.72876728 -8.261421834 0.26158207 1.052259095 0.79457459 0.027140602 0.059326578 0.787673656 0.138972616 0.075636809 0.035100977 5.48E-09 8.261421834 -0.257684504 GLS(ph)GPCRPPPPPQAR ddPTM_HeLa_CUDC101_4h_R1 2 GLSGPCRPPPPPQAR 15 1 Q9UEE5 Q9UEE5 STK17A Serine/threonine-protein kinase 17A 1 0 GLS(1)GPCRPPPPPQAR;GLS(1)GPCRPPPPPQAR ; 129.77 0.0034408 34262000 6961.1 6899 8043.6 8542.3 8828.9 7035.6 6022.9 4269.2 5998 3784.3 TRUE FALSE FALSE 6145.13041 7111.550013 8478.461347 8890.691917 8177.609637 6901.407652 6255.205271 4755.188471 5750.759901 3761.790815 1.633565159 1.89046929 2.253836474 2.363420071 2.173860812 1.834606971 1.662826451 1.26407573 1.528729316 1 11.87720391 -8.260268606 0.812314809 1.077724728 1.937179066 0.337849869 0.335933093 0.321112322 0.452748601 0.126047255 0.07738614 5.49E-09 8.260268606 0.859454339 SPAGPAATPAQAQAAST(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 SPAGPAATPAQAQAASTPR 19 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SPAGPAAT(0.001)PAQAQAAS(0.258)T(0.742)PR;SPAGPAATPAQAQAAS(0.24)T(0.76)PR;SPAGPAATPAQAQAAS(0.239)T(0.761)PR;SPAGPAATPAQAQAAS(0.071)T(0.929)PR ;;; 188.56 2.47E-25 195417000 8429.6 6681.73 6354.59 6245.39 7031.63 7409.5 6390.85 6941.5 7962.3 8630.6 TRUE FALSE FALSE 7441.495066 6887.586181 6698.138357 6500.103999 6512.920664 7268.176133 6637.347225 7731.692301 7634.090624 8579.264807 0.86738144 0.802817763 0.780735705 0.7576528 0.759146711 0.847179367 0.773649884 0.90120686 0.889830399 1 13.06663831 -8.260259317 0.694374259 0.989481366 0.798115152 0.488936161 0.05311591 0.227094377 0.237801793 0.019554236 0.011001467 5.49E-09 8.260259317 -0.191366214 S(ph)PGPPALKHPATK ddPTM_HeLa_CUDC101_4h_R1 1 SPGPPALKHPATK 13 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 S(1)PGPPALKHPATK 63.062 0.032476 58547000 4982.4 5230.4 4661.2 4841.5 5601.2 4430.2 4766.3 5039 5580.7 3299.4 TRUE FALSE FALSE 4398.370625 5391.542424 4913.198571 5038.957297 5188.010635 4345.701316 4950.137788 5612.619392 5350.661184 3279.775022 1.341058638 1.643875689 1.498029145 1.53637285 1.581819058 1.324999821 1.509291873 1.711281827 1.631411041 1 11.67938114 -8.25905095 0.644581722 1.016446937 1.542516317 0 0.216803994 0.225773857 0.205186145 0.053081101 0.028654594 5.51E-09 8.25905095 0.526069379 QRYDENEDLS(ph)DVEEIVSVR ddPTM_HeLa_CUDC101_4h_R1 1 QRYDENEDLSDVEEIVSVR 19 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;S4R3G4;F8WBN2;F6SRV7;F5H0A1 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 0 QRYDENEDLS(1)DVEEIVSVR 121.39 3.11E-05 2600800 776.04 644.6 869.85 797.15 731.93 597.07 778.15 660.78 706.28 557.84 TRUE FALSE FALSE 685.0737676 664.459362 916.8767222 829.6612226 677.9369821 585.6818845 808.1635062 736.0005242 677.1668395 554.5219429 1.235431305 1.198256211 1.653454356 1.496173836 1.222561146 1.056192441 1.457405819 1.327270334 1.221172306 1 9.11510074 -8.259042614 0.741575142 1.024184739 1.347036587 0.197812372 0.170729517 0.472741069 0.561013221 0.069043782 0.040361893 5.51E-09 8.259042614 0.322851847 NHLS(ph)PQQGGATPQVPSPCCR ddPTM_HeLa_CUDC101_4h_R1 3 NHLSPQQGGATPQVPSPCCR 20 0 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 0 NHLS(0.683)PQQGGAT(0.298)PQVPS(0.019)PCCR;NHLS(1)PQQGGATPQVPSPCCR;NHLS(0.996)PQQGGAT(0.002)PQVPS(0.001)PCCR ;; 122.83 2.31E-05 73063000 3935 3529.17 4561 4001.4 4107.8 4360 3561.02 3833.6 4040.2 2267.59 TRUE FALSE FALSE 3473.745265 3637.899545 4807.581456 4164.594388 3804.775778 4276.840264 3698.369734 4270.001528 3873.661246 2254.102274 1.541077042 1.613901723 2.132814253 1.847562303 1.68793396 1.897358569 1.640728452 1.894324662 1.718494006 1 11.13833726 -8.258866425 0.589873329 1.015233297 1.839532694 0.186613758 0.257062311 0.22824952 0.175057675 0.083397564 0.042873366 5.51E-09 8.258866425 0.824299398 TAQALSS(ph)GSGSQETK ddPTM_HeLa_CUDC101_4h_R1 2 TAQALSSGSGSQETK 15 0 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 T(0.003)AQALS(0.013)S(0.779)GS(0.133)GS(0.071)QET(0.001)K;TAQALS(0.044)S(0.387)GS(0.235)GS(0.334)QETK ; 94.454 0.0022667 7809300 4380 3607.1 3191.9 3727.1 3545.6 3320 3789.7 4076.1 3933 4266.3 TRUE FALSE FALSE 3866.58304 3718.230476 3364.463769 3879.107248 3284.048152 3256.676531 3935.869998 4540.106748 3770.880075 4240.923858 0.911731304 0.876750114 0.793332746 0.914684483 0.77437093 0.767916765 0.928069008 1.070546631 0.889164767 1 12.05016287 -8.255203701 0.815058072 0.989058293 0.868966179 0.035285851 0.090528957 0.586971036 0.833337144 0.032147073 0.019847252 5.56E-09 8.255203701 -0.120092114 LCSSS(ph)SSDTSSR ddPTM_HeLa_CUDC101_4h_R1 1 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LCS(0.15)S(0.15)S(0.503)S(0.004)S(0.192)DTSSR 166.11 3.43E-05 154320000 2128.7 1709.1 2072.8 2021.5 2162.2 2098.6 2398.9 1627.3 1504.7 1478.9 TRUE FALSE FALSE 1879.177013 1761.755345 2184.861838 2103.945508 2002.698814 2058.572702 2491.426377 1812.545254 1442.675629 1470.103437 1.278261764 1.198388699 1.486195993 1.431154744 1.362284288 1.400291061 1.694728625 1.232937226 0.98134294 1 10.52170195 -8.253414526 0.323727196 0.925731378 1.487977286 0.648372618 0.122680725 0.787860084 0.198600403 0.175580144 0.078434836 5.58E-09 8.253414526 0.562245909 (ac)AKPCGVRLS(ph)GEAR ddPTM_HeLa_CUDC101_4h_R1 1 AKPCGVRLSGEAR 13 2 H0YM70;A0A087X1Z3;Q9UL46;H0YLG1;H0YLD2 H0YM70 PSME2 Proteasome activator complex subunit 2 1 0 AKPCGVRLS(1)GEAR 78.287 0.0064923 84468000 2890.7 2764.5 2834.5 2805.4 3636.3 2783.1 2150.3 2681.9 2526.9 1958.6 TRUE FALSE FALSE 2551.856528 2849.670968 2987.741644 2919.816338 3368.057394 2730.017004 2233.237791 2987.196655 2422.740112 1946.95016 1.310694326 1.46365892 1.534575309 1.499687253 1.729914542 1.402201793 1.14704415 1.53429539 1.244377058 1 10.92700024 -8.250559416 0.715115894 1.027787871 1.472896664 0.417730321 0.155144898 0.317423431 0.352013775 0.063515386 0.036632029 5.62E-09 8.250559416 0.445108793 GGTTSWGTSGQPS(ph)PSYDSSR ddPTM_HeLa_CUDC101_4h_R1 3 GGTTSWGTSGQPSPSYDSSR 20 0 Q99081;Q99081-3;H0YNQ5 Q99081 TCF12 Transcription factor 12 1 0 GGTTSWGT(0.031)S(0.048)GQPS(0.503)PS(0.233)Y(0.173)DS(0.01)S(0.001)R;GGTTSWGT(0.071)S(0.241)GQPS(0.656)PS(0.032)YDSSR;GGTTSWGTS(0.025)GQPS(0.966)PS(0.008)Y(0.001)DSSR ;; 220.89 1.64E-33 89341800 5088.8 3884.6 3956.4 4102.4 4700.3 4234.63 4097.2 4573.8 4209.7 4875.6 TRUE FALSE FALSE 4492.298578 4004.279922 4170.294951 4269.713604 4353.568233 4153.861488 4255.230376 5094.462904 4036.174384 4846.599714 0.926896968 0.826203969 0.860457887 0.88097096 0.898272705 0.857067167 0.877982633 1.051141667 0.832784761 1 12.24275722 -8.250529843 1.035777392 0.987529505 0.891157942 0 0.075770878 0.379003712 0.846447215 0.017253634 0.011945668 5.62E-09 8.250529843 -0.096371563 SSSET(ph)ILSSLAGSDIVK ddPTM_HeLa_CUDC101_4h_R1 1 SSSETILSSLAGSDIVK 17 0 Q01850 Q01850 CDR2 Cerebellar degeneration-related protein 2 1 0 S(0.018)S(0.018)S(0.059)ET(0.903)ILSS(0.001)LAGSDIVK 140.68 0.00095691 23948000 3225.8 3441.7 2731.3 2664.6 3399.3 3089.4 2731.9 2851.5 2640 2512.2 TRUE FALSE FALSE 2847.676614 3547.734698 2878.96234 2773.273905 3148.540411 3030.474842 2837.270298 3176.103234 2531.178083 2497.257323 1.140321659 1.420652436 1.152849694 1.11052789 1.260799351 1.213521256 1.136154561 1.271836588 1.013583206 1 11.28612877 -8.249784949 1.027238816 1.023312753 1.21354047 0.474315037 0.086556261 0.293856644 0.646117393 0.026355108 0.018195562 5.63E-09 8.249784949 0.190227716 SPLDPMTS(ph)PGSGLILQANFVHSQR ddPTM_HeLa_CUDC101_4h_R1 2 SPLDPMTSPGSGLILQANFVHSQR 24 0 Q08499-6;Q08499;Q08499-10;A0A087WSZ7;Q08499-11;Q08499-9;A0A1B0GW84;Q08499-2;Q08499-12;Q08499-7;A0A1W2PQN6 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 S(0.013)PLDPMT(0.029)S(0.953)PGS(0.004)GLILQANFVHSQR;SPLDPMT(0.058)S(0.94)PGS(0.002)GLILQANFVHSQR ; 130.53 5.01E-09 130244000 5277.9 4309.6 4756.1 4687.6 5329.5 4453.8 3274.3 2068.08 4583.1 4657.5 TRUE FALSE FALSE 4659.232563 4442.373668 5013.229152 4878.78059 4936.353403 4368.851186 3400.590848 2303.501868 4394.182678 4629.796983 1.006357855 0.959518027 1.082818355 1.053778515 1.066213793 0.943637745 0.734501072 0.497538418 0.94910915 1 12.17673322 -4.529745605 1.851337742 1.013752636 0.459399835 0.939891275 0.042082363 0.076943036 0.391664976 0.005699989 0.061127434 2.95E-05 4.529745605 -0.5543528 down NASAS(ph)FQELEDK ddPTM_HeLa_CUDC101_4h_R1 2 NASASFQELEDK 12 0 Q99543-2;Q99543;F2Z3H0;F2Z3N9;H7C3L7 Q99543-2 DNAJC2 "DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed" 1 0 NAS(0.162)AS(0.838)FQELEDK;NAS(0.193)AS(0.807)FQELEDK ; 168.93 1.06E-06 35124000 5900.2 5062.4 4448.2 3981.6 3836.6 4260 3388.3 3040.5 4840.7 7219.3 TRUE FALSE FALSE 5208.5875 5218.366544 4688.683147 4143.986858 3553.581662 4178.747598 3518.987866 3386.61823 4641.164297 7176.359283 0.72579804 0.727160715 0.653351228 0.577449748 0.495178895 0.582293533 0.490358374 0.471913138 0.646729646 1 12.8090364 -8.248237084 0.166137038 1.282212248 0.309507469 0.410876731 0.114761193 0.716163093 0.066739781 0.228683579 0.127906997 5.65E-09 8.248237084 -0.97270478 GAEDDELEEEADWIYR ddPTM_HeLa_CUDC101_4h_R1 3 GAEDDELEEEADWIYR 16 0 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 0 ;; ;; 268.08 1.06E-70 39285100 2710.69 2665.52 2230.45 2082.65 2419.91 2364.5 2075.21 1947.67 2330.85 2561.06 FALSE FALSE TRUE 2392.947027 2747.641512 2351.034874 2167.589469 2241.39806 2319.401102 2155.251545 2169.38488 2234.771376 2545.826701 0.939948908 1.0792728 0.923485826 0.851428523 0.880420517 0.911060089 0.84658219 0.85213376 0.877817557 1 11.3139185 -6.524458859 24.99823958 0.979991844 0.871892612 0.494469296 0.050355418 25.79486949 408085.9855 0.006470396 0.009188819 2.99E-07 6.524458859 -0.108099232 GAEEMETVIPVDVMR ddPTM_HeLa_CUDC101_4h_R1 2 GAEEMETVIPVDVMR 15 0 Q99497;K7ELW0 Q99497 PARK7 Protein deglycase DJ-1 0 0 ; ; 244.18 7.99E-55 17141400 3320.2 3018.6 2908.2 2346.4 3098.4 2610.63 2209.07 2471.9 3427.7 3201.3 FALSE FALSE TRUE 2931.011189 3111.599488 3065.426089 2442.096334 2869.837205 2560.836582 2294.27457 2753.291104 3286.408755 3182.258525 0.921047478 0.977795947 0.963286315 0.767409786 0.901824029 0.804722986 0.720957946 0.865200323 1.0327284 1 11.63583533 -6.272078508 24.4083567 0.96317949 0.811547232 0.699403101 0.054232112 229.4756017 526463.819 0.008033075 0.012355312 5.34E-07 6.272078508 -0.151632258 SATDGNTSTT(ph)PPTSAK ddPTM_HeLa_CUDC101_4h_R1 3 SATDGNTSTTPPTSAK 16 0 A0A669KAX4;Q13620-1;Q13620;A0A669KAU9;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 1 0 SATDGNT(0.006)S(0.011)T(0.024)T(0.899)PPT(0.045)S(0.014)AK;SAT(0.001)DGNT(0.014)S(0.03)T(0.115)T(0.84)PPT(0.001)SAK;SATDGNT(0.058)S(0.025)T(0.037)T(0.858)PPT(0.017)S(0.005)AK ;; 144.15 0.00031649 323554000 12060 9683.4 9022.1 9293.3 10406.9 10631.8 9457.2 9430.9 11592.6 12110.4 TRUE FALSE FALSE 10646.34508 9981.734076 9509.862016 9672.320943 9639.20372 10429.01613 9821.967372 10504.47553 11114.74812 12038.3668 0.884367893 0.829160154 0.789962806 0.803457903 0.80070693 0.866314866 0.815888694 0.872583109 0.923277078 1 13.55535206 -8.248232555 0.694199442 0.990716652 0.822397061 0.687858951 0.03484148 0.179670001 0.188396884 0.01354984 0.007700001 5.65E-09 8.248232555 -0.168319592 TPSLS(ph)PASSLDV ddPTM_HeLa_CUDC101_4h_R1 2 TPSLSPASSLDV 12 0 B7WPE2;Q32P44;H7C355;G3V195 B7WPE2 EML3 Echinoderm microtubule-associated protein-like 3 1 0 T(0.199)PS(0.032)LS(0.762)PAS(0.007)SLDV;T(0.077)PS(0.063)LS(0.856)PAS(0.004)SLDV ; 96.756 0.01432 6707200 3217.2 2603.4 2842.2 2743.9 3670.5 3130.9 2680 2419.4 3362.7 2576.6 TRUE FALSE FALSE 2840.084693 2683.607668 2995.857929 2855.808102 3399.734528 3071.183299 2783.368498 2694.814716 3224.088083 2561.274269 1.108856138 1.04776271 1.169674785 1.114995039 1.327360591 1.199084119 1.086712396 1.052138285 1.258782834 1 11.32264603 -8.242950214 0.485641789 0.998655573 1.159785025 0 0.109074592 0.831715359 0.441951763 0.05781044 0.027564972 5.72E-09 8.242950214 0.161129452 GTQEVAPPTPLTPT(ph)SHTANTSPRPVSGMER ddPTM_HeLa_CUDC101_4h_R1 1 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 H7BYT1;P48730-2;P48730 H7BYT1 CSNK1D Casein kinase I isoform delta 1 0 GTQEVAPPT(0.002)PLT(0.01)PT(0.197)S(0.197)HT(0.197)ANT(0.16)S(0.16)PRPVS(0.078)GMER 48.18 0.016585 85185000 2441.2 1931.1 1860.8 1788.8 2164.6 2353.4 1996.9 2156.2 2134.4 2323.8 TRUE FALSE FALSE 2155.046237 1990.594902 1961.400477 1861.754996 2004.92177 2308.512816 2073.921102 2401.653092 2046.419129 2309.977934 0.93292936 0.861737626 0.849099226 0.805962242 0.867939793 0.999365744 0.897809919 1.039686595 0.885904189 1 11.17366336 -8.241029909 1.078629872 0.987847041 0.901431202 0 0.073908568 0.492997716 1.189841002 0.02023294 0.014308033 5.74E-09 8.241029909 -0.08641584 TDYIPLLDVDEKTGNSES(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 TDYIPLLDVDEKTGNSESK 19 1 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;H7C456;A0A0J9YW37;A0A0J9YVV8;P27816-7 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 TDYIPLLDVDEKT(0.024)GNS(0.336)ES(0.64)K 72.568 0.0067151 24138000 1460 1512.3 1533.3 1271.5 2033.6 1341 1275.3 1083.3 1769.1 960.03 TRUE FALSE FALSE 1288.861013 1558.89217 1616.194836 1323.357266 1883.58538 1315.422659 1324.488748 1206.618493 1696.176949 954.3196989 1.350554761 1.633511466 1.693557031 1.386702242 1.973746724 1.37838783 1.387887885 1.264375549 1.777367638 1 9.898328842 -8.237995339 0.842164226 1.045839408 1.53297603 0 0.303445376 0.321596551 0.486499634 0.071266261 0.045319258 5.78E-09 8.237995339 0.487136622 RVNS(ph)GDTEVGSSLLR ddPTM_HeLa_CUDC101_4h_R1 1 RVNSGDTEVGSSLLR 15 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 RVNS(0.979)GDT(0.021)EVGSSLLR 65.784 0.026685 10366000 1421.7 1361.2 1323.4 1285.1 1540.3 1811.1 1156.6 972.79 1123.8 1017.3 TRUE FALSE FALSE 1255.050481 1403.136959 1394.947007 1337.511933 1426.675138 1776.556285 1201.210449 1083.528481 1077.476488 1011.249054 1.241089399 1.387528574 1.379429727 1.322633556 1.410804917 1.756794014 1.18784828 1.071475396 1.065490725 1 9.981922638 -8.237627449 0.672083707 1.017366766 1.374474069 0.358622122 0.169047662 0.493601909 0.487522141 0.078476452 0.044189073 5.79E-09 8.237627449 0.357107303 QVVES(ph)AYEVIK ddPTM_HeLa_CUDC101_4h_R1 3 QVVESAYEVIK 11 0 P00338-3;P00338;P00338-4 P00338-3 LDHA L-lactate dehydrogenase A chain 1 0 QVVES(1)AYEVIK;QVVES(0.856)AY(0.144)EVIK;QVVES(1)AYEVIK ;; 162.94 8.25E-05 36214700 4537.85 3892.58 3949.14 3180.27 3844.74 4066.58 3767.68 3026.07 3342.21 4510.54 TRUE FALSE FALSE 4005.930102 4012.505776 4162.642454 3309.975157 3561.12119 3989.016762 3913.00068 3370.545577 3204.442689 4483.711107 0.893440725 0.894907294 0.928392208 0.738222218 0.7942352 0.889668551 0.872714719 0.75173121 0.71468536 1 12.13047761 -8.237590802 0.270246813 1.044021736 0.797138805 0 0.10406104 1.319333674 0.248901305 0.123073728 0.057818863 5.79E-09 8.237590802 -0.246882931 ASQSRPNSSALET(ph)LGGEK ddPTM_HeLa_CUDC101_4h_R1 1 ASQSRPNSSALETLGGEK 18 1 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 ASQSRPNS(0.08)S(0.024)ALET(0.895)LGGEK 122.1 0.0014776 19367000 2358.2 2117.8 2175.2 2138.9 2337.7 2326.9 2199.9 1679.6 2189.7 1871.7 TRUE FALSE FALSE 2081.775371 2183.046908 2292.797892 2226.133587 2165.252528 2282.518259 2284.75088 1870.798875 2099.439639 1860.567045 1.118892961 1.17332343 1.232311352 1.196481252 1.163759475 1.226786353 1.227986321 1.005499307 1.128386985 1 10.86152666 -8.237563943 0.72418172 1.011240346 1.182082577 0.198127863 0.072964078 0.333157553 0.37905459 0.02549523 0.014966748 5.79E-09 8.237563943 0.170842231 LGSVDS(ph)FER ddPTM_HeLa_CUDC101_4h_R1 5 LGSVDSFER 9 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 0 LGS(0.207)VDS(0.793)FER;LGS(0.021)VDS(0.979)FER;LGS(0.002)VDS(0.998)FER;LGS(0.233)VDS(0.767)FER;LGS(0.304)VDS(0.696)FER ;;;; 131.82 0.0029605 357776600 12486.46 9227.96 8866.91 10540.12 11101.2 10657.48 10071.99 9451.52 10575.91 12539.88 TRUE FALSE FALSE 11022.81609 9512.26251 9346.281976 10969.99165 10282.28659 10454.20633 10460.47003 10527.44283 10139.96651 12465.29224 0.884280599 0.76309984 0.749784425 0.880042878 0.824873288 0.838665161 0.839167653 0.844540395 0.81345598 1 13.60562909 -8.237158867 0.899034649 0.983380312 0.823303435 0 0.067007997 0.202045912 0.345740276 0.014837152 0.009745872 5.79E-09 8.237158867 -0.160076877 EK(ac)YLTVQNTVR ddPTM_HeLa_CUDC101_4h_R1 2 EKYLTVQNTVR 11 1 C9J7L8;H7C5Q2;Q9Y305-3;Q9Y305-2;Q9Y305;Q9Y305-4 C9J7L8 ACOT9 "Acyl-coenzyme A thioesterase 9, mitochondrial" 0 1 ; EK(1)YLTVQNTVR;EK(1)YLTVQNTVR 121.68 0.0019302 1425160 321.254 367.65 352.54 472.3 623.86 541.29 599.68 705.51 0 223.879 FALSE TRUE FALSE 283.5970931 378.9768607 371.5993788 491.5624355 577.8390907 530.9657951 622.8098585 785.8224066 0 222.5473578 1.274322445 1.702904337 1.669754171 2.208799244 2.596476977 2.385855309 2.798549777 3.531034538 0 1 7.797968562 -4.526923392 0.285178979 0.915568225 5.023265749 0.860264132 0.358249766 1.017208837 0.070064247 0.094827679 1.435752743 2.97E-05 4.526923392 4.107697525 up NVSSFPDDAT(ph)S(ph)PLQENR ddPTM_HeLa_CUDC101_4h_R1 1 NVSSFPDDATSPLQENR 17 0 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 2 0 NVS(0.051)S(0.466)FPDDAT(0.701)S(0.782)PLQENR 94.82 0.017999 3207500 1334.4 910.88 977.11 1274.9 1086.6 1202.1 1131.2 744.37 1316.2 1348.5 TRUE FALSE FALSE 1177.983655 938.9431331 1029.935522 1326.895933 1006.443683 1179.171945 1174.830763 829.106072 1261.945679 1340.479062 0.878778109 0.700453412 0.768333912 0.989866959 0.750808954 0.879664576 0.876426045 0.61851475 0.941413943 1 10.38853297 -8.236505773 0.859152513 0.984373449 0.80916319 0.29578876 0.100828993 0.422881727 0.664354456 0.033771404 0.021713637 5.80E-09 8.236505773 -0.175210258 HIKEEPLS(ph)EEEPCTSTAIAS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 1 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 HIKEEPLS(1)EEEPCT(0.002)S(0.009)T(0.094)AIAS(0.895)PEK 102.24 6.18E-05 413990000 3194.4 3045.4 2755.6 3026 2800.9 2877.2 2805.4 2717 2728.1 2636.7 TRUE FALSE FALSE 2819.957274 3139.225164 2904.576071 3149.413359 2594.283187 2822.322204 2913.605218 3026.292298 2615.646563 2621.016791 1.075902025 1.197712725 1.108186747 1.201599841 0.989800293 1.07680432 1.111631649 1.1546253 0.99795109 1 11.35591088 -8.236458727 1.045425825 1.013161179 1.114546798 0.375525049 0.059134533 0.371346598 0.844968291 0.017733013 0.012428142 5.80E-09 8.236458727 0.101385619 GGDVS(ph)PSPYSSSSWR ddPTM_HeLa_CUDC101_4h_R1 2 GGDVSPSPYSSSSWR 15 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YFE7 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 GGDVS(0.839)PS(0.161)PYSSSSWR;GGDVS(0.953)PS(0.046)PYSSSSWR ; 129.29 0.00070039 319350000 7810.1 6760 6035.9 6231.5 6866.2 7467.1 6135.2 5970.4 7499.1 7461.3 TRUE FALSE FALSE 6894.611917 6968.267587 6362.219012 6485.647505 6359.694105 7324.677509 6371.836719 6650.046203 7189.983924 7416.919856 0.929578862 0.939509624 0.857797999 0.874439475 0.857457574 0.987563254 0.859094724 0.896604835 0.969402941 1 12.85660446 -8.235965999 0.556737163 0.99880858 0.890961674 0.445269391 0.039347496 0.471409577 0.32552124 0.022258244 0.01134806 5.81E-09 8.235965999 -0.107846906 YDS(ph)PINSASHIPSSK ddPTM_HeLa_CUDC101_4h_R1 2 YDSPINSASHIPSSK 15 0 O14639-3;O14639-5;J3QSX6;O14639-4;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 1 0 YDS(1)PINSASHIPSSK;Y(0.002)DS(0.984)PINS(0.013)AS(0.001)HIPSSK ; 98.175 0.0042534 27807000 12528.4 8606.7 8874.9 7841.2 14928.6 12623 10463 5735 13993.6 12839 TRUE FALSE FALSE 11059.83994 8871.862226 9354.703939 8160.998029 13827.34692 12382.23731 10866.56141 6387.849218 13416.77789 12762.63306 0.866579795 0.695143564 0.732976017 0.639444697 1.083424311 0.970194571 0.8514357 0.500511861 1.051254692 1 13.63963838 -8.233395763 1.023937845 0.977207806 0.799077247 0.245469985 0.159028365 0.584814459 1.279707839 0.048807067 0.033995358 5.84E-09 8.233395763 -0.178130559 GAGTDDHTLIR ddPTM_HeLa_CUDC101_4h_R1 2 GAGTDDHTLIR 11 0 P08758;D6RBE9;D6RBL5 P08758 ANXA5 Annexin A5;Annexin 0 0 ; ; 220.82 2.65E-32 44078000 9292.3 7614.6 9043.9 7767.2 9274.6 8711 8050.7 8326 8896.8 10145.8 FALSE FALSE TRUE 8203.07068 7849.1968 9532.84059 8083.979989 8590.431236 8544.852189 8361.218196 9273.798185 8530.070138 10085.45233 0.813356745 0.778269188 0.945207045 0.801548579 0.851764597 0.84724531 0.829037501 0.919522286 0.84577963 1 13.29998817 -9.309991171 0.986079052 1.001900268 0.845334514 0 0.067124253 0.298230468 0.509732653 0.03336175 0.008478484 4.90E-10 9.309991171 -0.156565755 GAGTGGLGLAVEGPSEAK ddPTM_HeLa_CUDC101_4h_R1 1 GAGTGGLGLAVEGPSEAK 18 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 263.83 1.56E-62 726260 314.99 484.21 430.63 340.1 338.61 414.18 209.57 449.25 387.67 478.92 FALSE FALSE TRUE 278.0673497 499.1279362 453.9111604 353.970748 313.6314149 406.2802066 217.6531851 500.3908041 371.6900785 476.0713625 0.584087537 1.048430919 0.953451932 0.743524555 0.65879076 0.853401903 0.457186049 1.051083605 0.780744459 1 8.895034038 -6.043117372 24.6594998 0.831839828 0.735893029 0.06986364 0.187282342 1120.021945 640556.7288 0.031901686 0.052905704 9.05E-07 6.043117372 -0.095946798 GAGTNEDALIEILTTR ddPTM_HeLa_CUDC101_4h_R1 2 GAGTNEDALIEILTTR 16 0 D6RA82;P12429;D6RFG5;D6RCA8 D6RA82 ANXA3 Annexin;Annexin A3 0 0 ; ; 204.18 2.91E-16 3785900 1235.25 1388.17 1147.38 1138.28 1290.1 1096.54 1105.04 1158.22 1077.23 1135.37 FALSE FALSE TRUE 1090.455868 1430.937872 1209.410833 1184.703978 1194.931893 1075.625326 1147.661763 1290.067083 1032.826123 1128.616769 0.966187902 1.267868697 1.071586802 1.049695531 1.058757876 0.953047444 1.016874633 1.143051494 0.915125623 1 10.14033997 GAGVPACTPCK(ac)QPR ddPTM_HeLa_CUDC101_4h_R1 2 GAGVPACTPCKQPR 14 1 Q9UF56 Q9UF56 FBXL17 F-box/LRR-repeat protein 17 0 1 ; GAGVPACTPCK(1)QPR;GAGVPACTPCK(1)QPR 138.45 0.002418 7762300 488.06 442.98 617.89 736.54 977.2 879.7 1029.13 993.12 36.289 0 FALSE TRUE FALSE 430.8503467 456.6276887 651.2950024 766.5792848 905.1139029 862.9211882 1068.823889 1106.172766 34.79315206 0 0 GQGT(ph)PPSGPGVVR ddPTM_HeLa_CUDC101_4h_R1 1 GQGTPPSGPGVVR 13 0 A0A669KBI7;Q9UMN6 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 0 GQGT(0.606)PPS(0.394)GPGVVR 113.67 0.01763 28491000 3083.6 2377.3 2528.8 2294 2777.1 2552.1 2689 2233.9 2799.4 3035.3 TRUE FALSE FALSE 2722.145082 2450.541795 2665.514577 2387.559236 2572.238866 2503.422945 2792.715631 2488.198146 2684.007547 3017.245901 0.902195304 0.812178349 0.883426365 0.791304161 0.852512175 0.829704647 0.925584365 0.824658721 0.889555454 1 11.55901656 -8.230660723 0.716701886 0.991374896 0.84634824 0.310023956 0.049210706 0.240376601 0.268418233 0.01556286 0.009135218 5.88E-09 8.230660723 -0.145026656 QITTS(ph)PITVR ddPTM_HeLa_CUDC101_4h_R1 1 QITTSPITVR 10 0 O95835;O95835-2 O95835 LATS1 Serine/threonine-protein kinase LATS1 1 0 QIT(0.018)T(0.22)S(0.761)PIT(0.001)VR 158.06 8.18E-05 100790000 5150.5 3923.4 4323.2 3855.2 4565.3 4029.5 4187.1 3991.6 4299.7 5143 TRUE FALSE FALSE 4546.766198 4044.275304 4556.925269 4012.43172 4228.526914 3952.644001 4348.59785 4445.987609 4122.464546 5112.409207 0.889358816 0.791070343 0.891345955 0.784841658 0.827110418 0.773147031 0.850596592 0.869646272 0.806364354 1 12.3197876 -8.228562759 0.59644987 0.996806579 0.82090021 0 0.069247232 0.251557713 0.198378665 0.019453558 0.010345128 5.91E-09 8.228562759 -0.175906369 GAK(ac)LTPEEEEILNK ddPTM_HeLa_CUDC101_4h_R1 2 GAKLTPEEEEILNK 14 1 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 0 1 ; GAK(1)LTPEEEEILNK;GAK(1)LTPEEEEILNK 288.61 1.22E-85 1311740 718.95 596.25 768.21 400.81 538.48 541.99 423.12 769.57 501.19 681.262 FALSE TRUE FALSE 634.6757709 614.6197558 809.7417563 417.1567642 498.7574032 531.6524438 439.4398801 857.1747381 480.5307361 677.2098233 0.93719221 0.907576551 1.19570291 0.615993374 0.736488731 0.785063101 0.648897675 1.26574469 0.709574373 1 9.40345909 -6.254418197 24.96934774 0.979247153 0.795945136 0.096679506 0.201316472 654.6182808 2328009.394 0.02544062 0.041590589 5.57E-07 6.254418197 -0.183302016 EDKS(ph)PSEESAPT(ph)TSPESVSGSVPSSGSSGR ddPTM_HeLa_CUDC101_4h_R1 1 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 P54725-2;P54725-3;P54725;A0A494C0B4 P54725-2 RAD23A UV excision repair protein RAD23 homolog A 2 0 EDKS(0.409)PS(0.207)EES(0.384)APT(0.352)T(0.322)S(0.294)PES(0.027)VS(0.002)GS(0.001)VPS(0.001)SGSSGR 54.937 0.0081529 4429600 437.25 275.61 358.36 296.69 373.41 395.09 332.28 240.1 436.35 472.83 TRUE FALSE FALSE 385.9962178 284.1012174 377.7340256 308.7903006 345.8642882 387.5543165 345.0961509 267.4320135 418.3634683 470.0175861 0.82123782 0.604448059 0.803659345 0.656976057 0.735853931 0.8245528 0.734219657 0.568982994 0.890101734 1 8.876570927 -8.228439334 0.663235494 0.989604845 0.707911771 0.531316795 0.085708254 0.292177027 0.281828589 0.036487825 0.020556942 5.91E-09 8.228439334 -0.281693075 QGPPS(ph)PCQQLVLTK ddPTM_HeLa_CUDC101_4h_R1 1 QGPPSPCQQLVLTK 14 0 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 0 QGPPS(1)PCQQLVLTK 118.24 0.0015801 12373000 1051.3 1176.5 885.42 1027.8 917.04 914.89 956.79 747.95 1131.4 846.94 TRUE FALSE FALSE 928.0682077 1212.746571 933.2884834 1069.718127 849.3917862 897.4399976 993.6937108 833.0936047 1084.763213 841.9023632 1.1023466 1.440483628 1.108547172 1.270596417 1.008895833 1.065966835 1.180295666 0.989537078 1.288466764 1 9.717509121 -8.224951794 1.471610029 1.023265379 1.149654617 0 0.150864791 0.475904588 2.085774485 0.031058184 0.024168193 5.96E-09 8.224951794 0.126389238 TVS(ph)QQS(ph)FDGVSLDSSGPEDR ddPTM_HeLa_CUDC101_4h_R1 1 TVSQQSFDGVSLDSSGPEDR 20 0 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 2 0 T(0.268)VS(0.732)QQS(0.985)FDGVS(0.014)LDS(0.001)SGPEDR 175.52 3.95E-07 15098000 1655.1 1351.3 1048.1 1392.9 1924.2 1663.2 1218.2 1228.8 1689.3 1531.8 TRUE FALSE FALSE 1461.091687 1392.931951 1104.763456 1449.708483 1782.2556 1631.477231 1265.186382 1368.681625 1619.666339 1522.688785 0.959547152 0.914784403 0.725534638 0.952071426 1.170466097 1.071444964 0.83088967 0.898858413 1.063688361 1 10.57240539 -8.224772292 1.381154637 0.991032371 0.941905347 0.068331597 0.11684478 1.272030813 4.931253631 0.031594066 0.024249316 5.96E-09 8.224772292 -0.049127024 EAQTLDSQIQETS(ph)I ddPTM_HeLa_CUDC101_4h_R1 1 EAQTLDSQIQETSI 14 0 E7EVA0;P27816;P27816-2;P27816-4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 EAQTLDSQIQET(0.136)S(0.864)I 214.48 4.63E-24 57544000 4998.4 3975.1 3881.6 3839.4 4417.3 4254.6 3755.2 4239.8 4786.4 4948.2 TRUE FALSE FALSE 4412.495129 4097.568119 4091.451037 3995.987327 4091.44458 4173.450594 3900.039322 4722.441694 4589.102566 4918.767886 0.897073257 0.833047668 0.831804048 0.812395994 0.831802735 0.848474799 0.792889482 0.960086307 0.932978069 1 12.26408126 -8.217571552 0.708635664 0.990755495 0.839171168 0.488600076 0.047198786 0.260832438 0.285590585 0.017551236 0.010349327 6.06E-09 8.217571552 -0.151584327 RSATSTSAS(ph)PTLR ddPTM_HeLa_CUDC101_4h_R1 1 RSATSTSASPTLR 13 1 O75061-4;O75061;O75061-2 O75061-4 DNAJC6 Putative tyrosine-protein phosphatase auxilin 1 0 RSATSTS(0.035)AS(0.911)PT(0.054)LR 96.435 0.0064185 6678700 439.65 283.19 551.56 494.73 470.58 277.89 363.13 481.13 592.1 293.91 TRUE FALSE FALSE 388.1148935 291.9147482 581.379002 514.9072278 435.8662509 272.5897112 377.1360457 535.8998944 567.6933874 292.1618102 1.328424455 0.999154366 1.989921275 1.76240429 1.491865931 0.933009386 1.290846485 1.834257167 1.94307869 1 8.190623799 -8.217179668 0.633476139 1.024975097 1.477715899 0 0.428236794 0.803206614 0.711590418 0.160035677 0.08879605 6.06E-09 8.217179668 0.452740802 ELILGSETPSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 ELILGSETPSSPR 13 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 0 ELILGSET(0.002)PS(0.089)S(0.909)PR;ELILGSET(0.002)PS(0.208)S(0.79)PR;ELILGSETPS(0.108)S(0.892)PR ;; 214.45 4.55E-24 47375200 12506 9964 10056.3 9865.8 11667.4 11399.4 10934.4 9134.4 10654.6 11731.2 TRUE FALSE FALSE 11040.06564 10270.97903 10599.974 10268.16997 10806.71915 11181.97544 11356.14347 10174.22317 10215.41288 11661.4223 0.946716906 0.88076555 0.908977801 0.880524665 0.926706783 0.958886073 0.973821475 0.872468461 0.876000595 1 13.50945614 -8.213384252 0.978558963 0.991201594 0.918514584 0 0.048741472 0.314220938 0.632128633 0.010534499 0.00729594 6.12E-09 8.213384252 -0.07268701 TEESKADSPPPS(ph)YPTQQAEQAPNTCECHVCK ddPTM_HeLa_CUDC101_4h_R1 1 TEESKADSPPPSYPTQQAEQAPNTCECHVCK 31 1 E7EUR8;A0A1B0GVL4;P78312-4;P78312-6;P78312-2;P78312-5;P78312;D6RFZ4;P78312-3 E7EUR8 FAM193A Protein FAM193A 1 0 T(0.004)EES(0.001)KADS(0.096)PPPS(0.308)Y(0.282)PT(0.308)QQAEQAPNT(0.001)CECHVCK 56.914 0.0008855 18341000 3643.5 3605.3 3823.6 3713.3 3825.5 3689.7 3332.1 4438.1 4017.3 2304.6 TRUE FALSE FALSE 3216.414453 3716.37502 4030.315382 3864.744424 3543.300486 3619.32512 3460.620213 4943.315365 3851.705194 2290.892137 1.404000826 1.622239197 1.759277671 1.687004099 1.54669023 1.579875832 1.510599368 2.157812359 1.681312329 1 11.16169382 -8.213158782 0.391552592 0.922582408 1.752442699 0.026821042 0.272064907 0.513024766 0.184885711 0.176386912 0.082067276 6.12E-09 8.213158782 0.829860291 TQTPPVS(ph)PAPQPTEER ddPTM_HeLa_CUDC101_4h_R1 2 TQTPPVSPAPQPTEER 16 0 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 1 0 TQT(0.017)PPVS(0.871)PAPQPT(0.111)EER;TQTPPVS(0.999)PAPQPTEER ; 174.59 4.34E-07 31831000 4581.3 3884.5 3342.8 3420.7 2884.6 3129.1 3236.7 3917.3 3876.4 5281.2 TRUE FALSE FALSE 4044.286959 4004.176841 3523.521879 3560.210932 2671.808805 3069.417631 3361.540603 4363.229598 3716.613151 5249.787188 0.770371601 0.762731268 0.671174231 0.678162905 0.508936593 0.584674678 0.640319404 0.831125042 0.707955012 1 12.35804323 -8.209797779 0.474560249 1.009134124 0.633353585 0.168523844 0.118331226 0.383214546 0.197155185 0.06151763 0.030059397 6.17E-09 8.209797779 -0.375780539 TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIK ddPTM_HeLa_CUDC101_4h_R1 8 TVSLGAGAKDELHIVEAEAMNYEGSPIK 28 1 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 1 0 TVSLGAGAKDELHIVEAEAMNY(0.156)EGS(0.844)PIK;TVSLGAGAKDELHIVEAEAMNY(0.276)EGS(0.724)PIK;TVSLGAGAKDELHIVEAEAMNY(0.089)EGS(0.911)PIK;TVSLGAGAKDELHIVEAEAMNY(0.001)EGS(0.999)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK;TVSLGAGAKDELHIVEAEAMNY(0.001)EGS(0.999)PIK;TVSLGAGAKDELHIVEAEAMNY(0.004)EGS(0.996)PIK;TVSLGAGAKDELHIVEAEAMNYEGS(1)PIK ;;;;;;; 131.5 1.13E-16 567081800 36673.9 31146.3 28006.8 28453.6 33347.5 32294.9 29105.8 28160.9 33941.3 35739.1 TRUE FALSE FALSE 32375.04104 32105.88059 29520.93232 29614.06079 30887.52136 31678.92859 30228.42046 31366.62303 32542.22525 35526.52224 0.911292156 0.903715831 0.830954748 0.833576126 0.869421475 0.891697993 0.850869113 0.882907221 0.915998054 1 15.11660885 -8.209516226 0.579059814 0.997193032 0.86007402 0.514437281 0.032747814 0.22145 0.165781911 0.013238477 0.007056053 6.17E-09 8.209516226 -0.137119012 GALQNIIPASTGAAK ddPTM_HeLa_CUDC101_4h_R1 2 GALQNIIPASTGAAK 15 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 164.48 0.0010987 4200000 1567.81 1514.86 1572.37 1438.49 1770.95 1527.26 1685.71 1682.17 1747.68 1955.86 FALSE FALSE TRUE 1384.033688 1561.531041 1657.377078 1497.15784 1640.310547 1498.13006 1750.728399 1873.661433 1675.639891 1944.226458 0.71186856 0.803163147 0.852460922 0.770053218 0.843682864 0.770553273 0.900475555 0.963705347 0.861854278 1 10.92498055 -9.553123177 1.337915349 0.999486034 0.811823288 0.114802048 0.079884293 0.312678538 1.007193226 0.052495455 0.012557314 2.80E-10 9.553123177 -0.187662746 GANDFMCDEMER ddPTM_HeLa_CUDC101_4h_R1 7 GANDFMCDEMER 12 0 P17987;F5H282;E7EQR6;E7ERF2;F5GZ03 P17987 TCP1 T-complex protein 1 subunit alpha 0 0 ;;;;;; ;;;;;; 281.41 6.05E-102 148277000 14681.5 13922.3 14576.7 12656.6 16059.8 13926 13688.3 15207.1 15592.3 9435.4 FALSE FALSE TRUE 12960.55683 14351.22956 15364.76049 13172.79085 14875.10055 13660.38475 14216.26232 16938.21479 14949.57879 9379.277821 1.381828865 1.530099634 1.638160292 1.404456836 1.58595372 1.456443131 1.515709694 1.805918869 1.593894443 1 13.19526113 -8.681060598 0.356523648 0.872979536 1.610926301 0 0.212313581 0.594677858 0.139486944 0.17582147 0.050506307 2.08E-09 8.681060598 0.737946765 ENPVLDVVS(ph)NPEQTAGEER ddPTM_HeLa_CUDC101_4h_R1 2 ENPVLDVVSNPEQTAGEER 19 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ENPVLDVVS(1)NPEQTAGEER;ENPVLDVVS(1)NPEQTAGEER ; 218.14 6.11E-26 17403600 3154.6 2546.7 2213.77 2225.2 2350.4 2510.78 2322.58 2425.73 2609.65 3499.2 TRUE FALSE FALSE 2784.82257 2625.160808 2333.453102 2315.953274 2177.015675 2462.891055 2412.162689 2701.865298 2502.079122 3478.386603 0.800607548 0.754706451 0.670843517 0.665812498 0.625869382 0.708055583 0.693471705 0.776758195 0.719321745 1 11.76420257 -8.208097204 0.566970753 0.995286539 0.683297277 0.135561701 0.092855149 0.188540031 0.135670514 0.025589995 0.013514298 6.19E-09 8.208097204 -0.311989262 YS(ph)ELIILY(ph)EK ddPTM_HeLa_CUDC101_4h_R1 2 YSELIILYEK 10 0 Q96JC1-2;Q96JC1 Q96JC1-2 VPS39 Vam6/Vps39-like protein 2 0 Y(0.421)S(0.579)ELIILY(1)EK;Y(0.403)S(0.597)ELIILY(1)EK ; 90.657 0.013834 85386000 1969.34 1592.44 1570.66 1578.05 1559.63 1482.13 1556.58 1522.95 1809.01 2032.8 TRUE FALSE FALSE 1738.496951 1641.501189 1655.574631 1642.4097 1444.579202 1453.86084 1616.617812 1696.316472 1734.441842 2020.708815 0.860340163 0.812339302 0.819303909 0.812788902 0.714887366 0.719480624 0.80002512 0.839466062 0.858333387 1 10.98064573 -8.204127293 0.448254791 1.01070277 0.766871436 0.447983867 0.056291077 0.317904613 0.147363914 0.032822539 0.015840929 6.25E-09 8.204127293 -0.243831334 RSDS(ph)VSASER ddPTM_HeLa_CUDC101_4h_R1 1 RSDSVSASER 10 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 RS(0.013)DS(0.947)VS(0.04)ASER 106.54 0.0051628 35189000 1155.7 317.46 886.46 931.51 677.26 491.54 1105.5 911.39 867.88 1421.9 TRUE FALSE FALSE 1020.230598 327.2405663 934.384709 969.5010041 627.2998791 482.1646935 1148.139505 1015.138954 832.1056191 1413.442476 0.721805532 0.231520258 0.661070206 0.685914723 0.443809982 0.341127921 0.812300129 0.718203232 0.588708514 1 10.46499745 -8.202758042 0.994220101 0.953529378 0.564912715 0.058539886 0.209933639 0.306680141 0.636253629 0.054929853 0.038543334 6.27E-09 8.202758042 -0.388616664 S(ph)PFEGAVTESQSLFSDNFR ddPTM_HeLa_CUDC101_4h_R1 3 SPFEGAVTESQSLFSDNFR 19 0 O95628-5;O95628-3;O95628-2;O95628;O95628-8;O95628-4;O95628-7;O95628-9;O95628-10;O95628-6 O95628-5 CNOT4 CCR4-NOT transcription complex subunit 4 1 0 S(1)PFEGAVTESQSLFSDNFR;S(0.93)PFEGAVT(0.069)ES(0.001)QSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR ;; 235.37 5.56E-44 64513100 1610.69 1793.4 1372.45 1365.17 1511.62 1652.89 1529.36 1381.88 1653.07 1221.75 TRUE FALSE FALSE 1421.88736 1848.652528 1446.648798 1420.847533 1400.110804 1621.363877 1588.347928 1539.187633 1584.929755 1214.482977 1.170775867 1.52217245 1.191164328 1.169919678 1.152845146 1.335023964 1.307838774 1.267360402 1.305024266 1 10.24612655 -8.200988726 1.040584134 1.029877071 1.268086512 0 0.135889327 0.287975621 0.651301493 0.031890625 0.022793961 6.30E-09 8.200988726 0.238209441 GAPSQDDESGGIEDSPDR ddPTM_HeLa_CUDC101_4h_R1 2 GAPSQDDESGGIEDSPDR 18 0 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 0 0 ; ; 290.32 1.10E-103 15640600 1030.75 1190.53 891.84 1139.18 909.81 979.33 888.85 1034.92 950.74 1543.06 FALSE FALSE TRUE 909.9270475 1227.208818 940.0555681 1185.640684 842.6951289 960.6509119 923.1332422 1152.73111 911.5500948 1533.88181 0.593218487 0.800067391 0.612860497 0.772967432 0.549387263 0.62628744 0.601828143 0.751512341 0.594276618 1 10.58297161 -9.382557042 0.801913974 1.031254552 0.656019746 0 0.14900769 0.321353863 0.318436668 0.080597653 0.01502995 4.14E-10 9.382557042 -0.375234806 KPPAPPS(ph)PVQSQS(ph)PSTNWSPAVPVKK ddPTM_HeLa_CUDC101_4h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3;Q8IYB3-2 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(0.496)PVQS(0.242)QS(0.586)PS(0.269)T(0.269)NWS(0.139)PAVPVKK 47.564 0.02161 184140000 3004.5 3104.4 2639.1 2460.4 3035.2 2852.7 2591.4 2631.2 2693.9 2391.7 TRUE FALSE FALSE 2652.317065 3200.042884 2781.777729 2560.745747 2811.299343 2798.2895 2691.351166 2930.725172 2582.856302 2377.474062 1.115602945 1.345984352 1.170055974 1.077086723 1.182473192 1.177001064 1.132021253 1.232705424 1.086386743 1 11.21521389 -8.199300388 1.095859441 1.021469576 1.179269774 0.356913515 0.072069941 0.273263349 0.681809656 0.020269225 0.0147693 6.32E-09 8.199300388 0.157800198 PVSVAGS(ph)PLSPGPVR ddPTM_HeLa_CUDC101_4h_R1 1 PVSVAGSPLSPGPVR 15 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 PVS(0.265)VAGS(0.677)PLS(0.059)PGPVR 127.18 0.00075336 21307000 2446.9 1930.2 1960.3 1925.5 1792.5 1610.4 1795.2 1585.2 1945.7 2736 TRUE FALSE FALSE 2160.078091 1989.667174 2066.279748 2004.030213 1660.270846 1579.684303 1864.441465 1765.65276 1865.497422 2719.72615 0.79422632 0.731568939 0.759738162 0.73685 0.610455154 0.580824765 0.68552544 0.649202406 0.685913698 1 11.40924568 -8.196388223 0.272728104 1.085926608 0.593214872 0.11831119 0.104780238 0.47337467 0.093007372 0.088974524 0.043298707 6.36E-09 8.196388223 -0.492711735 GAPTTSLISVAVTK ddPTM_HeLa_CUDC101_4h_R1 1 GAPTTSLISVAVTK 14 0 P49419;A0A1B0GUY0;A0A1B0GW82;A0A1B0GTG2;A0A1B0GUA1;A0A1B0GTJ4;A0A1B0GTY9;A0A1B0GV49;A0A0J9YWF7;H0YHM6;A0A1B0GW77;P49419-4;P49419-2;A0A1B0GVU0 P49419 ALDH7A1 Alpha-aminoadipic semialdehyde dehydrogenase 0 0 132.5 0.00060992 0 0 0 0 0 65.302 0 119.29 0 0 63.001 FALSE FALSE TRUE 0 0 0 0 60.48480156 0 123.8910553 0 0 62.62626725 0 0 0 0 0.965805631 0 1.978260252 0 0 1 5.968695987 -9.544421758 1.347884033 0.995537854 0.343773002 0 0.685736351 0.705677095 2.321320599 0.410354862 0.1003091 2.85E-10 9.544421758 -0.651764852 GAPVIVPELGK(ac)PR ddPTM_HeLa_CUDC101_4h_R1 2 GAPVIVPELGKPR 13 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7 Q9Y618 NCOR2 Nuclear receptor corepressor 2 0 1 ; GAPVIVPELGK(1)PR;GAPVIVPELGK(1)PR 134.75 0.0011805 949640 322.33 220.79 278.26 226.96 433.42 175.6 170.81 200.185 179.41 127.13 FALSE TRUE FALSE 284.546966 227.5922782 293.3035773 236.2164098 401.4474701 172.2507226 177.3981989 222.9732512 172.0146439 126.3738251 2.251628973 1.800944761 2.32092031 1.869187782 3.17666629 1.363025313 1.403757453 1.764394257 1.361157215 1 6.981553869 -9.351424073 0.986763205 0.978078271 2.010419196 0.285371505 0.503496219 0.502271767 0.845417859 0.377064657 0.090413584 4.45E-10 9.351424073 1.032340926 TVTDVSTIDGNAAELVSGRPVSDTTEPS(ph)SPEGK ddPTM_HeLa_CUDC101_4h_R1 1 TVTDVSTIDGNAAELVSGRPVSDTTEPSSPEGK 33 1 C9JA33;B1ALY0;Q8IXS6;Q8IXS6-2 C9JA33 PALM2;PALM2-AKAP2 Paralemmin-2 1 0 TVTDVSTIDGNAAELVS(0.001)GRPVS(0.055)DT(0.248)T(0.248)EPS(0.344)S(0.103)PEGK 87.991 4.00E-09 42495000 2395.6 2100.5 1781 1725.5 1893.5 1771.9 2083 1517.6 2418.1 2594.3 TRUE FALSE FALSE 2114.791399 2165.213915 1877.286247 1795.873348 1753.820277 1738.10396 2163.342008 1690.35745 2318.424895 2578.868988 0.820046078 0.83959826 0.727949444 0.696380218 0.68007343 0.673979162 0.838872396 0.655464646 0.899008404 1 11.33252277 -8.194865975 0.406885124 1.020692505 0.699518128 0.684943299 0.0608492 0.387615523 0.150978054 0.051858201 0.024712983 6.38E-09 8.194865975 -0.321174377 S(ph)SVDLEESSTK ddPTM_HeLa_CUDC101_4h_R1 2 SSVDLEESSTK 11 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 S(0.994)S(0.006)VDLEESSTK;S(0.5)S(0.5)VDLEESSTK ; 286.19 8.60E-103 68857500 10160.8 9664.4 9055.2 9545.8 10253.4 9644.9 8479.2 7854.6 8241 8202.2 TRUE FALSE FALSE 8969.766427 9962.148709 9544.751502 9935.118984 9497.02711 9460.939602 8806.245584 8748.735915 7901.302492 8153.41295 1.100124142 1.22183787 1.170644926 1.218522727 1.164791624 1.160365562 1.080068634 1.073015186 0.96907915 1 12.99318837 -8.193800264 0.985802476 1.016996242 1.154350511 0.611274004 0.051216378 0.260471318 0.532138966 0.016411005 0.01154117 6.40E-09 8.193800264 0.137354269 LKS(ph)PSQKQDGGTAPVASASPK ddPTM_HeLa_CUDC101_4h_R1 1 LKSPSQKQDGGTAPVASASPK 21 2 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 LKS(0.726)PS(0.274)QKQDGGTAPVASASPK 89.803 0.00060083 14937000 2235.9 2233.7 2411.6 2395.5 2914 2209.9 1911.6 1499.6 2529.5 1412.9 TRUE FALSE FALSE 1973.811191 2302.517649 2541.978391 2493.198844 2699.040026 2167.749839 1985.331052 1670.308402 2425.232939 1404.496008 1.405351941 1.639390669 1.809886519 1.775155522 1.921714273 1.543436099 1.413554073 1.189258206 1.726763854 1 10.45583681 -8.192492101 0.843493156 1.05681003 1.622908114 0 0.292643948 0.306372391 0.466748637 0.077599367 0.051028035 6.42E-09 8.192492101 0.566098084 IDEDGENTQIEDTEPMS(ph)PVLNSK ddPTM_HeLa_CUDC101_4h_R1 8 IDEDGENTQIEDTEPMSPVLNSK 23 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 IDEDGENTQIEDTEPMS(0.654)PVLNS(0.345)K;IDEDGENTQIEDTEPMS(0.993)PVLNS(0.007)K;IDEDGENTQIEDT(0.001)EPMS(0.987)PVLNS(0.013)K;IDEDGENTQIEDTEPMS(0.996)PVLNS(0.004)K;IDEDGENTQIEDTEPMS(0.998)PVLNS(0.002)K;IDEDGENTQIEDTEPMS(1)PVLNSK;IDEDGENTQIEDTEPMS(1)PVLNSK;IDEDGENTQIEDT(0.001)EPMS(0.999)PVLNSK ;;;;;;; 218.99 1.35E-35 473488200 45213.7 38183.1 37242.68 36082.58 40683.4 38980.7 38104.1 34897.65 43730.9 42649.35 TRUE FALSE FALSE 39913.81863 39359.47605 39256.13193 37554.18357 37682.26663 38237.20809 39573.7879 38870.25741 41928.29379 42395.66977 0.941459796 0.928384344 0.925946733 0.885802342 0.888823477 0.901913056 0.933439385 0.91684499 0.988975856 1 15.3716293 -8.190864135 0.515773646 1.000432336 0.905673918 0.834767035 0.014733618 0.256959037 0.155406839 0.010454178 0.005373623 6.44E-09 8.190864135 -0.094758418 GARPPAAGPGGDEDEDEEDTAPESALDTSLDK ddPTM_HeLa_CUDC101_4h_R1 1 GARPPAAGPGGDEDEDEEDTAPESALDTSLDK 32 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 0 0 149.44 3.42E-17 10947000 842.1 735.16 606.48 606.64 537.46 744.42 586.82 493.82 599.54 888.55 FALSE FALSE TRUE 743.3903145 757.8094082 639.2681433 631.3814013 497.8126466 730.2214288 609.453844 550.0344727 574.8267074 883.2648651 0.841639177 0.857963945 0.723755884 0.714826805 0.563605172 0.826729849 0.690001231 0.622728804 0.65079766 1 9.786702314 -7.531832132 0.385536676 1.008376019 0.652443288 0 0.12625544 0.388133358 0.163137036 0.048750962 0.043916337 2.94E-08 7.531832132 -0.355932732 EMLMEDVGS(ph)EEEQEEEDEAPFQEK ddPTM_HeLa_CUDC101_4h_R1 5 EMLMEDVGSEEEQEEEDEAPFQEK 24 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EMLMEDVGS(1)EEEQEEEDEAPFQEK;EMLMEDVGS(1)EEEQEEEDEAPFQEK;EMLMEDVGS(1)EEEQEEEDEAPFQEK;EMLMEDVGS(1)EEEQEEEDEAPFQEK;EMLMEDVGS(1)EEEQEEEDEAPFQEK ;;;; 128.89 5.03E-08 45699200 20859.3 15969.5 13900.8 14606.5 16134.7 16388.7 15846.8 14323.9 21104.5 23398.1 TRUE FALSE FALSE 18414.20447 16461.50137 14652.3193 15202.2162 14944.47533 16076.11285 16458.01638 15954.47488 20234.56358 23258.92706 0.791704812 0.707749817 0.6299654 0.653607803 0.642526428 0.691180329 0.707599983 0.685950596 0.869969777 1 14.50549693 -8.185883972 0.609120064 0.990037197 0.663963173 0.824723701 0.046543521 0.134718337 0.111460362 0.019078029 0.010661839 6.52E-09 8.185883972 -0.326074023 FIQELSGS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 FIQELSGSSPK 11 0 I3L254;Q01664 I3L254 TFAP4 Transcription factor AP-4 1 0 FIQELSGS(0.5)S(0.5)PK 221.09 2.78E-32 333740000 6774.7 5425.9 5378.3 4967.8 5617.7 5190.7 5517.1 6461.6 6408.4 6701.9 TRUE FALSE FALSE 5980.579936 5593.065548 5669.067166 5170.408357 5203.293463 5091.696046 5729.896395 7197.162425 6144.24304 6662.036801 0.897710432 0.839542878 0.850951043 0.77610024 0.781036434 0.764285188 0.860081769 1.080324628 0.922276959 1 12.70174761 -8.185242807 0.774441308 0.987534804 0.841683927 0.177642928 0.087645187 0.502157038 0.652094861 0.032374203 0.020523323 6.53E-09 8.185242807 -0.145850877 QFTSST(ph)SYNRGDST(ph)FESKS(ph)Y(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 QFTSSTSYNRGDSTFESKSYK 21 2 P02671-2;P02671 P02671-2 FGA Fibrinogen alpha chain;Fibrinopeptide A;Fibrinogen alpha chain 4 0 QFT(0.033)S(0.033)S(0.033)T(0.327)S(0.324)Y(0.294)NRGDS(0.187)T(0.517)FES(0.437)KS(0.91)Y(0.903)K 43.598 0.030766 2850600 2145.6 1302.1 1526.8 1521.6 1487.6 1802.9 1847.1 1226.5 2394 2426 TRUE FALSE FALSE 1894.096021 1342.216158 1609.343426 1583.657425 1377.862712 1768.512686 1918.343266 1366.119802 2295.318307 2411.570044 0.785420281 0.556573574 0.667342601 0.656691448 0.571355045 0.733344939 0.795474828 0.566485641 0.951794169 1 11.235757 -8.183226982 0.796474062 0.973853497 0.656107851 0.715926086 0.079183853 0.210946439 0.288788975 0.029689528 0.019116199 6.56E-09 8.183226982 -0.317745646 LLES(ph)PGVEAGEGEAEKEEAGAQGRPLR ddPTM_HeLa_CUDC101_4h_R1 1 LLESPGVEAGEGEAEKEEAGAQGRPLR 27 2 A0A0G2JHC2;Q6NYC8;Q6NYC8-3 A0A0G2JHC2 PPP1R18 Phostensin 1 0 LLES(1)PGVEAGEGEAEKEEAGAQGRPLR 46.532 0.018147 47250000 3061.5 3041.2 2702.1 2685 3606.8 3103.3 2585.7 2370 2798.3 2337.7 TRUE FALSE FALSE 2702.635611 3134.895767 2848.183699 2794.505906 3340.73355 3044.109723 2685.431315 2639.79122 2682.95289 2323.795256 1.163026563 1.349041297 1.225660347 1.202561154 1.437619575 1.309973292 1.15562303 1.135982705 1.154556488 1 11.18226725 -8.180534509 0.79725229 1.019999649 1.261498714 0.304265014 0.098388744 0.31797707 0.436217081 0.0339836 0.021935503 6.60E-09 8.180534509 0.241499064 GASALQLER ddPTM_HeLa_CUDC101_4h_R1 1 GASALQLER 9 0 Q9H4B7 Q9H4B7 TUBB1 Tubulin beta-1 chain 0 0 80.455 0.03924 2767400 1069.2 958.16 969.25 995.94 965.7 876.74 1010.5 759.85 892.3 1165.3 FALSE FALSE TRUE 943.8699968 987.6797739 1021.650587 1036.558738 894.4622349 860.0176452 1049.475323 846.3482526 855.5190163 1158.368744 0.814826886 0.852647121 0.881973545 0.894843497 0.772174007 0.74243858 0.905994166 0.730638026 0.73855499 1 10.17787886 -13.52287874 0.220694293 1.945837243 0.798677028 0 0.100920399 24.94700862 0.316404277 10.17446882 0.044930104 3.00E-14 13.52287874 -1.147160215 GASDEEIK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 GASDEEIKR 9 1 P25685 P25685 DNAJB1 DnaJ homolog subfamily B member 1 0 1 GASDEEIK(1)R 91.069 0.009441 0 382.59 0 0 216.46 254.46 180.34 371.46 202.82 367.89 226.82 FALSE TRUE FALSE 337.7433802 0 0 225.2881744 235.6889928 176.900315 385.7873366 225.908209 352.7254185 225.4708646 1.497946889 0 0 0.99918974 1.045319063 0.784581703 1.71102966 1.001939694 1.564394669 1 7.81679721 VNDAEPGS(ph)PEAPQGKR ddPTM_HeLa_CUDC101_4h_R1 1 VNDAEPGSPEAPQGKR 16 1 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 0 VNDAEPGS(1)PEAPQGKR 84.874 0.0016675 0 782.34 841.21 762.58 870.83 832.89 696.38 814.86 775.71 786.04 485.94 TRUE FALSE FALSE 690.6352912 867.126683 803.8073815 906.3462114 771.4493641 683.0977117 846.2894232 864.0136909 753.6390985 483.0496073 1.429739887 1.79510897 1.664026571 1.876300483 1.597039626 1.414135736 1.751972076 1.788664514 1.560169157 1 8.916027545 -8.178888247 0.706221511 1.038749969 1.698037803 0.267416402 0.209797544 0.20683646 0.226093014 0.059667634 0.036250383 6.62E-09 8.178888247 0.659287834 S(ph)SGRNSPSAASTSSNDSK ddPTM_HeLa_CUDC101_4h_R1 2 SSGRNSPSAASTSSNDSK 18 1 A0A590UJ84;B1AKN3;Q9P2R6-2;Q9P2R6;D6RA28 A0A590UJ84 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 S(0.902)S(0.082)GRNS(0.013)PS(0.003)AASTSSNDSK;S(0.712)S(0.195)GRNS(0.091)PS(0.002)AASTSSNDSK ; 119.43 5.26E-05 32403700 2733.9 1354.23 3334.9 3025 2154.12 1549.99 1908.82 639.98 3258.1 3750.4 TRUE FALSE FALSE 2413.436386 1395.952221 3515.194782 3148.372575 1995.214859 1520.426523 1982.443827 712.8327363 3123.799739 3728.092454 0.64736495 0.374441417 0.942893671 0.844499597 0.535183846 0.407829618 0.531758225 0.191205756 0.837908334 1 11.86422192 -8.177235237 0.10080368 1.529368843 7.89E-18 0.468047282 0.185973697 10.24426748 0.555421222 4.772730291 3.349363331 6.65E-09 8.177235237 -1.529368843 GATPGK(ac)ALVATPGK ddPTM_HeLa_CUDC101_4h_R1 2 GATPGKALVATPGK 14 1 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 ; GATPGK(1)ALVATPGK;GATPGK(1)ALVATPGK 215.02 4.41E-20 29888000 6280.3 6095.3 6321.4 6560.6 6934.2 6296.2 7298.3 9484 5448.3 6363.4 FALSE TRUE FALSE 5544.132754 6283.088968 6663.154005 6828.169625 6422.677881 6176.110475 7579.797876 10563.62022 5223.718768 6325.550214 0.876466484 0.993287344 1.053371451 1.079458607 1.015354817 0.976375219 1.198282777 1.669992312 0.825812552 1 12.62697526 -4.161234894 1.542018126 0.966036911 2.073255486 0.892707673 0.072980787 0.314973794 0.571412152 0.010842284 0.56441749 6.90E-05 4.161234894 1.107218574 AVSLDSPVSVGSS(ph)PPVK ddPTM_HeLa_CUDC101_4h_R1 2 AVSLDSPVSVGSSPPVK 17 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 AVSLDSPVSVGS(0.061)S(0.939)PPVK;AVSLDS(0.001)PVS(0.001)VGS(0.181)S(0.817)PPVK ; 157.58 9.27E-08 8235700 4255.8 3898.5 3736.5 3519.9 4485 3770.3 2681.4 1655 4409.7 4009.4 TRUE FALSE FALSE 3756.941575 4018.608164 3938.506492 3663.456736 4154.150485 3698.387809 2784.822496 1843.39851 4227.9303 3985.55191 0.942640231 1.008294022 0.988196009 0.919184298 1.042302441 0.927948724 0.69872945 0.462520261 1.06081426 1 11.9605638 -4.526242004 1.976327372 0.977067792 0.430927735 0.940660213 0.042905463 0.063318747 0.379684931 0.005116422 0.051356508 2.98E-05 4.526242004 -0.546140057 down GATQQILDEAER ddPTM_HeLa_CUDC101_4h_R1 2 GATQQILDEAER 12 0 F5GWF6;P78371-2;P78371;F8VQ14 F5GWF6 CCT2 T-complex protein 1 subunit beta 0 0 ; ; 158.01 0.0008675 21232000 2662.7 2619.7 2576.05 2519.91 2888.7 2984.6 2505.33 2959.6 3145.5 2511.83 FALSE FALSE TRUE 2350.582342 2700.409852 2715.319055 2622.682822 2675.606356 2927.673728 2601.961417 3296.508901 3015.841159 2496.889523 0.941404223 1.081509545 1.087480655 1.050380002 1.071575787 1.17252834 1.042081114 1.320246198 1.207839246 1 11.28591627 -1.000000001 0.286609844 0.970179918 3.214280123 0.142177554 0.096078997 21.72085955 0.277391811 0.025990875 24.94114525 0.1 1.000000001 2.244100205 GAVAEDGDELRTEPEAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 GAVAEDGDELRTEPEAKK 18 2 G3V5D9;A0A0C4DGK8;G3V3C7;G3V5Q1;G3V3M6;P27695 G3V5D9 APEX1 "DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial" 0 1 ; GAVAEDGDELRTEPEAK(1)K;GAVAEDGDELRTEPEAK(1)K 125.45 0.0053436 4887000 1569.33 1610.15 1788.98 1521.24 2168.31 1993.24 2254.49 2291.29 1477.19 1328.85 FALSE TRUE FALSE 1385.375516 1659.756813 1885.69767 1583.282743 2008.358091 1955.222268 2341.446435 2552.121192 1416.299603 1320.945941 1.048775331 1.256491096 1.427535837 1.198597682 1.520393855 1.48016827 1.772552806 1.932040602 1.072185893 1 10.36735571 -1.651595464 0.233753014 0.945654751 5.431072295 0.899661226 0.094342096 6.476506902 0.103737945 0.059372547 10.60214179 0.022305119 1.651595464 4.485417544 GAVDDDVAEADIISTVEFNHSGELLATGDK ddPTM_HeLa_CUDC101_4h_R1 2 GAVDDDVAEADIISTVEFNHSGELLATGDK 30 0 P63151;P63151-2;E5RIY1 P63151 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform 0 0 ; ; 223.57 2.23E-44 10128600 2472.7 1935 1834.59 1865.54 2009.64 1779.99 1990.96 1725.51 2017.77 2181.9 FALSE FALSE TRUE 2182.853854 1994.615056 1933.773485 1941.624785 1861.392861 1746.039656 2067.751994 1921.935084 1934.596667 2168.921962 1.006423418 0.919634312 0.891582786 0.895202695 0.858211081 0.8050265 0.953354722 0.88612459 0.891962321 1 11.08276243 -7.095417411 2.401249505 1.003619268 0.88054975 0.29079021 0.049478739 0.111428069 1.250059594 0.00600862 0.00756638 8.03E-08 7.095417411 -0.123069518 GAVEKGEELSCEER ddPTM_HeLa_CUDC101_4h_R1 2 GAVEKGEELSCEER 14 1 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 0 ; ; 98 0.010941 29983000 4931.6 4721.3 5489 4720.4 6508.4 5014 4916.7 5787.9 5939.7 4748.7 FALSE FALSE TRUE 4353.525324 4866.757657 5785.751943 4912.918315 6028.288299 4918.366304 5106.338766 6446.771141 5694.863052 4720.454521 0.922268249 1.030993442 1.225676874 1.040772301 1.277056748 1.041926425 1.081747265 1.36570983 1.206422607 1 12.20471006 -6.940352837 4.98202975 0.963737535 1.160303591 0.12402561 0.125194 0.126575607 6.426631017 0.015205502 0.020017625 1.15E-07 6.940352837 0.196566055 WDSMT(ph)RK ddPTM_HeLa_CUDC101_4h_R1 1 WDSMTRK 7 1 A2PYH4 A2PYH4 HFM1 Probable ATP-dependent DNA helicase HFM1 1 0 WDS(0.001)MT(0.999)RK 60.788 0.0031087 0 906.83 764.81 975.19 936.99 796.12 802.13 777.63 748.94 913.76 704.8 TRUE FALSE FALSE 800.5327621 788.3728896 1027.911721 975.2045022 737.3918137 786.8307067 807.6234496 834.1963023 876.094426 700.6078183 1.142626076 1.1252699 1.467171354 1.39194065 1.052502976 1.123068693 1.152746841 1.190675126 1.250477661 1 9.452463277 -8.174807171 0.89693848 1.02290506 1.213918808 0 0.140021439 0.494151949 0.846129639 0.042314693 0.028968323 6.69E-09 8.174807171 0.191013748 NLAPHHAS(ph)PDPPAPPASASDPHREK ddPTM_HeLa_CUDC101_4h_R1 1 NLAPHHASPDPPAPPASASDPHREK 25 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;Q9Y618-2 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 NLAPHHAS(1)PDPPAPPASASDPHREK 65.111 0.00087856 19521000 2111.7 1941.7 2081.9 1738.4 2742.2 2110.6 1569 1543.2 2284.4 1623.6 TRUE FALSE FALSE 1864.169727 2001.521476 2194.453811 1809.299466 2539.913369 2070.343821 1629.516856 1718.87165 2190.236065 1613.942755 1.155040798 1.240144032 1.359685035 1.121043148 1.573732006 1.282786403 1.009649723 1.065014013 1.357071717 1 10.65637369 -8.173691105 0.853124409 1.02258416 1.240098006 0 0.184471741 0.550418854 0.857905889 0.053271735 0.0356888 6.70E-09 8.173691105 0.217513845 GAYGGGYGGYDDYNGYNDGYGFGSDR ddPTM_HeLa_CUDC101_4h_R1 1 GAYGGGYGGYDDYNGYNDGYGFGSDR 26 0 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7 P31943 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 0 0 160.36 2.34E-11 4805300 2327.7 2202.9 1896 1747.2 2362.3 2175.2 1877.9 2299.1 2006.9 2235.8 FALSE FALSE TRUE 2054.850535 2270.768738 1998.503495 1818.458368 2188.037835 2133.711684 1950.331232 2560.820251 1924.174733 2222.501362 0.924566603 1.021717591 0.89921362 0.818203489 0.984493361 0.960049663 0.877538824 1.152224378 0.865769878 1 11.11796859 -4.248195788 24.67226098 0.950158771 1.152224536 0.49329949 0.064760495 1223.475048 2279236.879 0.008493939 0.213744694 5.65E-05 4.248195788 0.202065765 MAPVPLDDSNRPAS(ph)LTK ddPTM_HeLa_CUDC101_4h_R1 1 MAPVPLDDSNRPASLTK 17 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 MAPVPLDDS(0.048)NRPAS(0.57)LT(0.382)K 58.29 0.031089 15939000 1615.8 1186.2 1227.5 1193.5 1436.4 1053 1059.4 1048.2 1485.3 1769.9 TRUE FALSE FALSE 1426.398373 1222.745416 1293.862363 1242.176089 1330.439634 1032.915779 1100.261413 1167.522851 1424.075305 1759.372556 0.810742653 0.694989479 0.735411246 0.706033571 0.756201197 0.587093266 0.625371476 0.663601832 0.809422257 1 10.7808453 -8.173235135 0.268023585 1.090686773 0.596259136 0.577898462 0.072122298 0.478173978 0.092757396 0.090154485 0.044999741 6.71E-09 8.173235135 -0.494427637 IEHAPS(ph)PSSGGTLK ddPTM_HeLa_CUDC101_4h_R1 2 IEHAPSPSSGGTLK 14 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 IEHAPS(0.988)PS(0.01)S(0.002)GGTLK;IEHAPS(0.996)PS(0.002)S(0.001)GGTLK ; 78.501 0.003129 39252000 9987.7 7527.9 7612 7120.1 7047.1 7847.4 7448.8 5772.1 8623.8 11227.4 TRUE FALSE FALSE 8816.956946 7759.825676 8023.527745 7410.488454 6527.249473 7697.72392 7736.102711 6429.172532 8268.323314 11160.61893 0.790006092 0.695286321 0.718914229 0.663985439 0.58484655 0.689721956 0.693160725 0.576058781 0.740848099 1 13.44612942 -8.171312506 0.392491534 1.033159644 0.621571404 0.39575947 0.087905299 0.235279976 0.086769013 0.040012194 0.019420028 6.74E-09 8.171312506 -0.41158824 NSNS(ph)PPSPSSMNQR ddPTM_HeLa_CUDC101_4h_R1 3 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 NS(0.017)NS(0.982)PPSPSSMNQR;NS(0.003)NS(0.972)PPS(0.009)PS(0.009)S(0.009)MNQR;NSNS(0.961)PPS(0.003)PS(0.028)S(0.008)MNQR ;; 210.02 1.00E-23 78569300 10814.1 6322.3 8586.6 7619.16 6877 7392.58 6826.62 5597.94 11652 12950.1 TRUE FALSE FALSE 9546.487591 6517.082569 9050.817569 7929.902278 6369.697411 7251.578853 7089.92502 6235.186862 11171.69963 12873.07223 0.741585802 0.506256972 0.703081394 0.616006975 0.494807867 0.56331377 0.550756253 0.484358881 0.867834766 1 13.65206878 -8.168397037 0.360718957 1.060587584 0.500840123 0.80214223 0.073330901 0.316501293 0.100703728 0.072120288 0.034878813 6.79E-09 8.168397037 -0.559747461 SSFASSSASDASKPSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 SSFASSSASDASKPSSPR 18 1 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 SSFASSSASDASKPS(0.043)S(0.956)PR;SSFASSSASDAS(0.001)KPS(0.049)S(0.95)PR;SSFASSSASDASKPS(0.022)S(0.978)PR;SSFASSSASDASKPS(0.009)S(0.991)PR ;;; 139.78 4.06E-05 591860000 14375.4 11574.6 11266.7 10959.3 12428.8 11701.2 11928.3 10072.8 14473.8 14455.4 TRUE FALSE FALSE 12690.3374 11931.19971 11875.81188 11406.26762 11511.95219 11478.01911 12388.37853 11219.44684 13877.18384 14369.41864 0.883148979 0.830318888 0.826464325 0.79378769 0.801142515 0.798781036 0.862134985 0.780786413 0.965744279 1 13.81071407 -8.167244623 0.518783973 1.001408286 0.803787924 0.889458729 0.023712404 0.170497454 0.104898039 0.014385013 0.007582585 6.80E-09 8.167244623 -0.197620362 GCLDEETSR ddPTM_HeLa_CUDC101_4h_R1 2 GCLDEETSR 9 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 143.73 0.0076217 16098800 4413.9 4032.8 4662 4100.7 4429.2 3673.1 4297.8 4101.7 4534.3 1405.52 FALSE FALSE TRUE 3896.509333 4157.045788 4914.041822 4267.944271 4102.46674 3603.041737 4463.567586 4568.620948 4347.394235 1397.159905 2.788878582 2.975354342 3.517164933 3.054728565 2.93629006 2.578832763 3.194743545 3.269934195 3.111593899 1 10.44828143 -8.9075609 0.584946982 0.843837365 3.096296068 0 0.688163853 0.2148436 0.127399399 0.247897262 0.065086588 1.24E-09 8.9075609 2.252458703 YNLDAS(ph)EEEDSNK ddPTM_HeLa_CUDC101_4h_R1 4 YNLDASEEEDSNK 13 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 YNLDAS(0.98)EEEDS(0.02)NK;YNLDAS(1)EEEDSNK;YNLDAS(1)EEEDSNK;Y(0.026)NLDAS(0.973)EEEDSNK ;;; 265.64 2.44E-70 213343000 15830 11222.7 10256.4 10812.6 9450.9 10873 10617.9 8445.5 13471 19834.9 TRUE FALSE FALSE 13974.4314 11568.45808 10810.89201 11253.58456 8753.725936 10665.61564 11027.43596 9406.901582 12915.71968 19716.92113 0.708753223 0.586727411 0.548305282 0.5707577 0.443970226 0.540937176 0.559287928 0.477097896 0.655057633 1 14.26714667 -8.163983081 0.449226278 1.023364783 0.493058671 0.456057646 0.109970848 0.143647387 0.067824308 0.032044472 0.016105963 6.86E-09 8.163983081 -0.530306112 GCSHPGGSADGPAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 GCSHPGGSADGPAKK 15 1 E7EUB5;Q01831-3;Q01831-2;Q01831 E7EUB5 XPC DNA repair protein complementing XP-C cells 0 1 GCSHPGGSADGPAK(1)K 58.071 0.033025 0 165.63 157.53 124.62 71.146 66.576 116.26 184.38 157.36 0 0 FALSE TRUE FALSE 146.2151025 162.3833126 131.3573342 74.0476414 61.66482112 114.0425342 191.4915984 175.2732263 0 0 0 GCTIVKPFNLSQGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 GCTIVKPFNLSQGKK 15 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 0 1 ; GCTIVKPFNLSQGK(1)K;GCTIVKPFNLSQGK(1)K 172.82 7.28E-07 5870700 2484.54 3308.46 3554.79 3489.7 3239.35 2743.76 3340.81 2808.07 3284.66 2887.93 FALSE TRUE FALSE 2193.305988 3410.389731 3746.9727 3632.02505 3000.389604 2691.427349 3469.666161 3127.729338 3149.264925 2870.752464 0.764017802 1.187977638 1.305223194 1.265182246 1.045157896 0.937533759 1.208626033 1.089515511 1.097017233 1 11.48721322 -7.249452278 24.76724294 0.888563961 1.149206623 0.278548529 0.131682371 454.1479794 938342.0101 0.022870011 0.027892116 5.63E-08 7.249452278 0.260642661 MPDEPEEPVVAVS(ph)SPAVPPPTK ddPTM_HeLa_CUDC101_4h_R1 1 MPDEPEEPVVAVSSPAVPPPTK 22 0 O60885;O60885-2;O60885-3;M0QZD9 O60885 BRD4 Bromodomain-containing protein 4 1 0 MPDEPEEPVVAVS(0.499)S(0.499)PAVPPPT(0.001)K 54.668 0.016381 4481500 2181.8 1663.1 1503 1674.8 1861.2 1927.9 1466.4 1374.9 2184.6 2306.4 TRUE FALSE FALSE 1926.052711 1714.33814 1584.256726 1743.105583 1723.902984 1891.12852 1522.959539 1531.413058 2094.549863 2292.68143 0.840087369 0.747743719 0.691006044 0.760291229 0.751915622 0.824854467 0.66427002 0.667957196 0.913580856 1 11.16282019 -8.156143706 0.462537098 1.012753592 0.711963876 0.732665121 0.053625769 0.298630315 0.149133039 0.037850517 0.019338517 6.98E-09 8.156143706 -0.300789717 DSS(ph)TSPGDYVLSVSENSR ddPTM_HeLa_CUDC101_4h_R1 3 DSSTSPGDYVLSVSENSR 18 0 P46108;I3L297;P46108-2 P46108;P46108-2 CRK Adapter molecule crk 1 0 DSS(0.861)T(0.069)S(0.069)PGDYVLSVSENSR;DSS(0.998)T(0.001)S(0.001)PGDYVLSVSENSR;DS(0.01)S(0.974)T(0.016)SPGDYVLSVSENSR ;; 316.58 2.66E-145 83742000 9127 7110.6 6815.4 6240.2 7279.9 7375 6388.4 5994.1 7788.6 10050.7 TRUE FALSE FALSE 8057.146896 7329.669158 7183.861139 6494.702328 6742.876281 7234.334163 6634.802728 6676.444115 7467.550611 9990.917989 0.806447106 0.733633202 0.719039146 0.650060619 0.674900573 0.724091037 0.664083394 0.668251318 0.747433881 1 13.28640153 -8.15509561 0.444646839 1.015953274 0.662556887 0.34372664 0.079385178 0.140106553 0.065129378 0.020770652 0.010502517 7.00E-09 8.15509561 -0.353396387 T(ph)SPPGGELS(ph)PGAGR ddPTM_HeLa_CUDC101_4h_R1 2 TSPPGGELSPGAGR 14 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 2 0 T(0.965)S(0.035)PPGGELS(1)PGAGR;T(0.987)S(0.013)PPGGELS(1)PGAGR ; 140.77 0.0018559 50516000 8133.3 7323.9 6432.4 6100.3 6967.2 6159.7 6055.5 5695.7 8600.9 8581 TRUE FALSE FALSE 7179.926903 7549.540678 6780.155001 6349.096602 6453.243537 6042.213985 6289.062663 6344.075465 8246.367262 8529.95983 0.841730447 0.885061692 0.79486365 0.744329015 0.756538561 0.708351986 0.737291006 0.743740368 0.966753352 1 13.05832323 -8.153937917 0.227476732 1.08588364 0.675237712 0.916612746 0.028012498 0.584882289 0.089746018 0.088368856 0.047041991 7.02E-09 8.153937917 -0.410645927 FRDQDLAS(ph)CDR ddPTM_HeLa_CUDC101_4h_R1 1 FRDQDLASCDR 11 1 Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2;Q9Y383 Q96HJ9-2 LUC7L2 Putative RNA-binding protein Luc7-like 2 1 0 FRDQDLAS(1)CDR 82.515 0.019875 5583300 1828.6 1214.7 1437.4 1566.7 1172.1 1638.1 1489.6 1610.2 1326.2 1835.6 TRUE FALSE FALSE 1614.25428 1252.123467 1515.110192 1630.596798 1085.636518 1606.855972 1547.054371 1793.498659 1271.533475 1824.68177 0.884677157 0.686214708 0.830342155 0.893633523 0.594973072 0.880622582 0.847848867 0.982910384 0.696852183 1 10.83342916 -8.152568866 1.062314104 0.978354499 0.816750257 0 0.137240435 0.39523371 0.932856179 0.029343015 0.021737969 7.04E-09 8.152568866 -0.161604242 LTVENS(ph)PKQEAGISEGQGTAGEEEEK ddPTM_HeLa_CUDC101_4h_R1 1 LTVENSPKQEAGISEGQGTAGEEEEK 26 1 F8VVL1;O43583 F8VVL1 DENR Density-regulated protein 1 0 LT(0.004)VENS(0.623)PKQEAGIS(0.248)EGQGT(0.126)AGEEEEK 47.099 0.025742 177610000 2416 1680.1 1922.3 1883.1 2145.5 1950.8 1844.2 1768.8 2100.9 2447.8 TRUE FALSE FALSE 2132.800142 1731.86189 2026.225353 1959.900957 1987.230739 1913.59174 1915.331412 1970.153042 2014.300013 2433.240377 0.876526694 0.711751254 0.832727162 0.80546952 0.816701366 0.786437607 0.787152568 0.809682866 0.82782615 1 11.24866313 -8.152312741 0.765381256 0.986201561 0.793794727 0.231585641 0.06184517 0.17066629 0.217433989 0.014320156 0.009254526 7.04E-09 8.152312741 -0.192406834 DVDVSEDS(ph)PPPLPER ddPTM_HeLa_CUDC101_4h_R1 2 DVDVSEDSPPPLPER 15 0 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 DVDVS(0.247)EDS(0.753)PPPLPER;DVDVS(0.081)EDS(0.919)PPPLPER ; 175.27 3.90E-07 124220000 6720.4 5269.7 5136 4929 4738.2 5492.3 4703.5 4418.2 5674.9 7427.8 TRUE FALSE FALSE 5932.644899 5432.053211 5413.667696 5130.025925 4388.672426 5387.543528 4884.915571 4921.150029 5440.97822 7383.619115 0.803487396 0.735689792 0.733199751 0.694784745 0.59437958 0.729661626 0.661588239 0.666495651 0.73689855 1 12.85011242 -8.151676923 0.3951887 1.028222646 0.649045361 0.290822297 0.086874285 0.215770651 0.081236391 0.033781618 0.01673592 7.05E-09 8.151676923 -0.379177285 GDAEKPEEELEEDDDEELDETLSER ddPTM_HeLa_CUDC101_4h_R1 4 GDAEKPEEELEEDDDEELDETLSER 25 1 Q9NS69 Q9NS69 TOMM22 Mitochondrial import receptor subunit TOM22 homolog 0 0 ;;; ;;; 195.15 2.48E-22 123823000 6868.66 6019.01 4663.76 5308.1 5486.97 5493.83 4675.16 4597.96 4754.88 5260.69 FALSE FALSE TRUE 6063.526087 6204.448564 4915.896973 5524.587262 5082.207155 5389.044346 4855.482487 5121.373181 4558.881834 5229.399182 1.159507216 1.186455336 0.940050052 1.0564478 0.971852975 1.030528395 0.928497198 0.97934256 0.871779276 1 12.35242949 -6.740177056 24.99954348 1.08576242 0.986703789 0.087477991 0.090191748 238.0849856 279931.7422 0.012037357 0.017014396 1.82E-07 6.740177056 -0.099058631 MASNIFGT(ph)PEENQASWAK ddPTM_HeLa_CUDC101_4h_R1 4 MASNIFGTPEENQASWAK 18 0 Q9UK76-3;Q9UK76;J3KSH8;J3KT51;Q9UK76-2 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 MAS(0.001)NIFGT(0.999)PEENQASWAK;MASNIFGT(1)PEENQASWAK;MAS(0.144)NIFGT(0.825)PEENQAS(0.031)WAK;MAS(0.185)NIFGT(0.815)PEENQASWAK ;;; 145.43 0.00039909 344926000 13695.5 11134.1 11745.6 10952.5 13389.1 11391.3 10664.2 12912.6 12186 12377.5 TRUE FALSE FALSE 12090.13425 11477.12842 12380.60266 11399.19029 12401.41277 11174.02993 11075.52177 14382.51819 11683.68792 12303.87808 0.98262793 0.932805767 1.006235805 0.92647133 1.00792715 0.90817138 0.90016511 1.168941865 0.949593929 1 13.58682549 -8.151648704 1.329371049 0.99611355 0.972948483 0 0.075019297 1.52010927 5.504722353 0.017213405 0.013577985 7.05E-09 8.151648704 -0.023165067 AETSEGSGSAPAVPEASAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 AETSEGSGSAPAVPEASASPK 21 0 A0A087WVW7;A0A0D9SFX7;B5MCB4;I6LM39;A0A087X1U4;P51608;P51608-2 A0A087WVW7 MECP2 Methyl-CpG-binding protein 2 1 0 AETSEGSGSAPAVPEAS(0.002)AS(0.998)PK;AETSEGSGSAPAVPEAS(0.337)AS(0.663)PK;AETSEGSGSAPAVPEAS(0.118)AS(0.882)PK ;; 377.28 5.80E-279 59044700 6676.6 5363.77 5496.9 5713.05 4714.31 5076.21 4748.05 4463.79 6412.6 7120.8 TRUE FALSE FALSE 5893.979069 5529.021396 5794.079041 5946.052873 4366.544744 4979.389752 4931.183879 4971.92981 6148.269914 7078.445165 0.832665781 0.781106764 0.818552508 0.840022453 0.61687908 0.703458123 0.696647889 0.702404228 0.868590456 1 12.78921678 -8.150142906 0.1785035 1.149714393 0.58912438 0.635068554 0.063122639 1.402059999 0.154355308 0.27319369 0.158908301 7.08E-09 8.150142906 -0.560590013 RADNCS(ph)PVAEEETTGSAESTLPK ddPTM_HeLa_CUDC101_4h_R1 1 RADNCSPVAEEETTGSAESTLPK 23 1 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 RADNCS(1)PVAEEETTGSAESTLPK 99.641 4.61E-05 47862000 4435.7 3960 4294.6 4368.2 4626.6 4342.3 3840.5 3487.4 4192.2 3363 TRUE FALSE FALSE 3915.75397 4082.002906 4526.779066 4546.354077 4285.304935 4259.477862 3988.629371 3884.391519 4019.395742 3342.996726 1.171330483 1.221060994 1.354108136 1.359963664 1.281875301 1.274149576 1.193129906 1.161948945 1.202333137 1 11.70692623 -8.149383274 0.753796252 1.0207083 1.269516511 0.293203763 0.083848022 0.245445584 0.303994426 0.02656558 0.017078472 7.09E-09 8.149383274 0.248808211 LIGTAVPQRTS(ph)PTGPK ddPTM_HeLa_CUDC101_4h_R1 1 LIGTAVPQRTSPTGPK 16 1 C9JB30;Q9UPY8 C9JB30 MAPRE3 Microtubule-associated protein RP/EB family member 3 1 0 LIGTAVPQRT(0.171)S(0.822)PT(0.007)GPK 169.64 3.90E-06 22039000 2446 2601.7 2228.6 2300.6 3356.1 2347.9 2332.1 2970.5 2740.9 1586.4 TRUE FALSE FALSE 2159.283588 2681.855293 2349.084857 2394.428412 3108.527189 2303.117719 2422.049878 3308.649713 2627.918942 1576.964022 1.369266234 1.700644565 1.489624889 1.518378592 1.971209961 1.460475754 1.535894189 2.098113632 1.666441913 1 10.62293403 -8.148255762 0.228548234 0.738793735 1.902474249 0.051183788 0.284407188 1.327720519 0.20592403 0.569972761 0.304394005 7.11E-09 8.148255762 1.163680515 GDDGIFDDNFIEER ddPTM_HeLa_CUDC101_4h_R1 4 GDDGIFDDNFIEER 14 0 O60493-4;O60493;O60493-2 O60493-4 SNX3 Sorting nexin-3 0 0 ;;; ;;; 364.46 3.45E-245 251762000 12774.9 11223.7 10017.4 10120.6 11289.2 10699.6 9854.3 9703.8 11262.9 11596.3 FALSE FALSE TRUE 11277.44559 11569.48889 10558.97094 10533.36181 10456.41821 10495.52296 10234.38365 10808.44137 10798.63849 11527.32469 0.978322888 1.003657761 0.915994927 0.913773325 0.907098437 0.910490789 0.887836851 0.937636586 0.936786183 1 13.4927701 -6.746989301 14.12422344 0.990519763 0.91079818 0.695006332 0.021437591 0.315740178 307.9381821 0.002120698 0.002969546 1.79E-07 6.746989301 -0.079721583 NASVYSPS(ph)GPVNRR ddPTM_HeLa_CUDC101_4h_R1 2 NASVYSPSGPVNRR 14 1 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 NAS(0.001)VYS(0.01)PS(0.99)GPVNRR;NAS(0.001)VYS(0.076)PS(0.923)GPVNRR ; 81.01 0.012897 29694000 2023.11 1805.87 1845.83 2125.79 2314.57 1999.81 1729.72 1217.81 1840.41 1552.23 TRUE FALSE FALSE 1785.964113 1861.506714 1945.621153 2212.488905 2143.828782 1961.666956 1796.43588 1356.440568 1764.547521 1542.997267 1.15746421 1.206422561 1.260936228 1.433890359 1.389392469 1.271335341 1.16425085 0.879094602 1.143584346 1 10.59151979 -8.148115177 0.820077879 1.022739138 1.24256023 0.129052502 0.146905756 0.538400096 0.780742666 0.051903669 0.034772004 7.11E-09 8.148115177 0.219821093 GDDLLPAGTEDYIHIR ddPTM_HeLa_CUDC101_4h_R1 2 GDDLLPAGTEDYIHIR 16 0 K7EM18;P41567;O60739 K7EM18 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b 0 0 ; ; 176.56 2.74E-07 8931100 9730.1 7673.9 7276.6 7132.1 7090.7 7613.4 6637.3 6239.6 8712.4 10393.7 FALSE FALSE TRUE 8589.552428 7910.323763 7669.995007 7422.977866 6567.633188 7468.18708 6893.302884 6949.890843 8353.271184 10331.87781 0.831364113 0.765623046 0.742362148 0.718453896 0.635666943 0.722829598 0.667187806 0.672664831 0.808494965 1 13.33481487 -7.828573409 0.379832536 1.020708762 0.652195805 0.615202333 0.062053859 0.147828516 0.058331903 0.02135037 0.014458845 1.48E-08 7.828573409 -0.368512956 GDDLQAIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 GDDLQAIKK 9 1 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2D6;G3V2Q1;B4DY08;G3V4W0;G3V5V7;G3V576 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 1 ; GDDLQAIK(1)K;GDDLQAIK(1)K 113.62 0.0030868 1595290 1840.81 600.75 593.01 603.24 1220.11 1311.87 1514.43 1097.94 737.88 960.54 FALSE TRUE FALSE 1625.033042 619.2583954 625.0699144 627.8427346 1130.104916 1286.848265 1572.842072 1222.925052 707.4642741 954.8266654 1.701914181 0.648555825 0.65464229 0.657546293 1.183570754 1.347729711 1.64725403 1.280782257 0.740934768 1 9.899095047 -7.267870421 24.99877326 1.33145946 1.067345638 0 0.39792443 1092.974372 4248608.868 0.074017969 0.085712643 5.40E-08 7.267870421 -0.264113822 GDDWNDREWDR ddPTM_HeLa_CUDC101_4h_R1 3 GDDWNDREWDR 11 1 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 0 0 ;; ;; 136.49 0.0019926 117820000 7507.6 6995.8 6463.1 6834.4 7635.1 7937.9 6812.7 6752.4 6761.6 8324.8 FALSE FALSE TRUE 6627.570509 7211.332306 6812.514736 7113.136373 7071.873884 7786.497783 7075.468121 7521.065922 6482.883986 8275.283719 0.800887406 0.871430219 0.823236395 0.859564048 0.854577816 0.940934238 0.85501215 0.90885898 0.783403229 1 13.01459306 -9.471384981 1.201747445 1.000229957 0.858415172 0 0.076230486 0.243444394 0.627350402 0.028520587 0.006967772 3.38E-10 9.471384981 -0.141814785 NKPLEQS(ph)VEDLSK ddPTM_HeLa_CUDC101_4h_R1 2 NKPLEQSVEDLSK 13 1 O95466;O95466-2;O95466-3 O95466 FMNL1 Formin-like protein 1 1 0 NKPLEQS(0.735)VEDLS(0.265)K;NKPLEQS(0.963)VEDLS(0.037)K ; 125.45 0.00092217 131861000 12068.6 9357.9 9408 9111.5 10234.9 11833.3 10661.1 8985.1 9494.8 11499 TRUE FALSE FALSE 10653.937 9646.205807 9916.624938 9483.106353 9479.891818 11607.59952 11072.3022 10007.92746 9103.420325 11430.60344 0.932053768 0.843892963 0.867550431 0.829624298 0.829343076 1.015484404 0.968654215 0.875537982 0.796407677 1 13.48061395 -8.146598392 1.094788588 0.986657104 0.893954425 0 0.083451896 0.410709901 1.026824021 0.017582332 0.013198203 7.14E-09 8.146598392 -0.092702679 Y(ph)PGIFNSTTS(ph)DAFLQS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 YPGIFNSTTSDAFLQSK 17 0 D6RFW2;Q16880 D6RFW2 UGT8 2-hydroxyacylsphingosine 1-beta-galactosyltransferase 3 0 Y(0.65)PGIFNS(0.167)T(0.192)T(0.476)S(0.517)DAFLQS(0.998)K 57.52 0.0027909 0 1634.8 1531.6 1035.3 1146.4 1306.6 1237.7 948.6 1235.2 2010.3 1891.9 TRUE FALSE FALSE 1443.171222 1578.786781 1091.27145 1193.155147 1210.214721 1214.092935 985.1878198 1375.810175 1927.434583 1880.646895 0.767380217 0.839491339 0.580263872 0.634438687 0.643509807 0.645571977 0.523855819 0.731562198 1.024878508 1 10.87701328 -8.146313829 0.366740759 1.037912897 0.596844386 0.800319551 0.07220166 0.424537862 0.14050531 0.076391621 0.037787685 7.14E-09 8.146313829 -0.441068512 GTFS(ph)DQELDAQSLDDEDDNMHHAVYPAVNR ddPTM_HeLa_CUDC101_4h_R1 1 GTFSDQELDAQSLDDEDDNMHHAVYPAVNR 30 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 GT(0.26)FS(0.74)DQELDAQSLDDEDDNMHHAVYPAVNR 91.078 1.40E-07 6225500 618.66 564.91 580.36 687.17 548.33 645.44 484.89 575.39 647.68 459.7 TRUE FALSE FALSE 546.1416126 582.3142075 611.7360171 715.1957628 507.8807883 633.1293074 503.5923697 640.8900718 620.9823563 456.965684 1.195147977 1.274306207 1.338691369 1.56509731 1.111419973 1.385507336 1.102035421 1.40249059 1.358925578 1 8.835942019 -8.145144388 0.735411986 1.022131691 1.310778154 0 0.167038757 0.384545722 0.454988366 0.048107596 0.030653089 7.16E-09 8.145144388 0.288646463 GDEELDSLIK ddPTM_HeLa_CUDC101_4h_R1 4 GDEELDSLIK 10 0 P0C0S5;A0A494C189;Q71UI9-4;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386 P0C0S5;Q71UI9 H2AFZ;H2AFV Histone H2A.Z;Histone H2A.V;Histone H2A 0 0 ;;; ;;; 196.79 5.07E-16 112741000 12063.5 11872.8 12284.6 11754.1 11968.1 11762.4 10853.9 10276.1 10449.9 12624.9 FALSE FALSE TRUE 10649.43482 12238.5869 12948.74263 12233.483 11085.23711 11538.05182 11272.53856 11445.88969 10019.1507 12549.80653 0.848573625 0.97520124 1.031788227 0.974794549 0.883299442 0.919380852 0.89822409 0.912037142 0.798351008 1 13.6153775 -5.750291046 24.97662669 0.942222225 0.904030684 0.060499625 0.066137082 507.330014 1136609.513 0.009830937 0.019514378 1.78E-06 5.750291046 -0.038191541 GDEGIFEESFIEER ddPTM_HeLa_CUDC101_4h_R1 4 GDEGIFEESFIEER 14 0 A0A087X0R6;Q9UMY4-3;Q9UMY4;Q9UMY4-1 A0A087X0R6 SNX12 Sorting nexin-12 0 0 ;;; ;;; 290.28 3.84E-103 88032000 5711.48 4991.12 4798.15 4449.5 5390.07 4760.11 4566.84 4485.71 5360.48 5422.66 FALSE FALSE TRUE 5041.988972 5144.890491 5057.552503 4630.969842 4992.455275 4669.318833 4742.984549 4996.345095 5139.518746 5390.405777 0.935363529 0.954453283 0.938250794 0.859113401 0.926174296 0.866227706 0.879893786 0.926895915 0.953456745 1 12.39617816 -7.986996548 0.294808435 1.01653938 0.879855065 0.507436575 0.029283748 0.748948741 0.187841589 0.040600414 0.02364438 1.03E-08 7.986996548 -0.136684315 GDFCIQVGR ddPTM_HeLa_CUDC101_4h_R1 2 GDFCIQVGR 9 0 Q32Q12;P22392-2;J3KPD9;P22392;E7ERL0;O60361;P15531;P15531-2 Q32Q12;P15531 NME1-NME2;NME2;NME1;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A 0 0 ; ; 145.16 0.015619 8660000 4278.8 3152.3 3145.1 3359.8 3920.3 3630.3 2960.3 3460.6 3247.5 2270.25 FALSE FALSE TRUE 3777.24555 3249.418627 3315.133619 3496.827166 3631.107279 3561.058076 3074.479763 3854.540716 3113.636675 2256.746452 1.673757168 1.439868721 1.468988072 1.549499353 1.609000992 1.577961083 1.362350547 1.708007877 1.379701593 1 11.14002862 -9.364346181 0.928772537 0.977080372 1.549310366 0.391423958 0.151377053 0.206159309 0.297397611 0.084103145 0.018623282 4.32E-10 9.364346181 0.572229994 GDFGPTLGLLRPAPEPEAEGSAVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 GDFGPTLGLLRPAPEPEAEGSAVKR 25 2 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 0 1 GDFGPTLGLLRPAPEPEAEGSAVK(1)R 176.44 1.27E-15 1633300 206.55 248.54 146.59 171.33 204.41 137.96 165.42 53.729 225.91 284.24 FALSE TRUE FALSE 182.3385221 256.1972228 154.5150988 178.317578 189.3310815 135.3286429 171.8003048 59.84529218 216.5978942 282.5493278 0.645333413 0.906734498 0.546860614 0.631102467 0.670081515 0.478955812 0.608036502 0.211804759 0.766584355 1 8.142358947 -8.3894206 0.092068846 1.585178796 3.37E-16 0.553116768 0.139639498 9.712168612 0.404281316 4.093607166 2.709585414 4.08E-09 8.3894206 -1.585178796 HNS(ph)WDTVNTVLPEDPEVADLFSR ddPTM_HeLa_CUDC101_4h_R1 2 HNSWDTVNTVLPEDPEVADLFSR 23 0 Q8N961 Q8N961 ABTB2 Ankyrin repeat and BTB/POZ domain-containing protein 2 1 0 HNS(0.949)WDT(0.051)VNTVLPEDPEVADLFSR;HNS(0.925)WDT(0.075)VNTVLPEDPEVADLFSR ; 129.73 9.40E-08 12743800 1478.02 1327.7 1635.38 1350.98 1927.42 1974.5 1540.64 1291.79 980.7 743.35 TRUE FALSE FALSE 1304.768736 1368.604863 1723.79359 1406.078804 1785.238067 1936.839702 1600.063001 1438.842152 940.2751309 738.9285211 1.765757714 1.852147839 2.332828603 1.90286173 2.415982081 2.621146223 2.165382652 1.947200725 1.272484556 1 9.529291005 -8.140968368 0.43156459 0.935744997 2.314472462 0.776243419 0.225013478 0.314056293 0.139004702 0.180595801 0.091915256 7.23E-09 8.140968368 1.378727465 NVES(ph)GEEELASK ddPTM_HeLa_CUDC101_4h_R1 1 NVESGEEELASK 12 0 Q96HS1-2;Q96HS1 Q96HS1-2 PGAM5 "Serine/threonine-protein phosphatase PGAM5, mitochondrial" 1 0 NVES(1)GEEELASK 99.481 0.0013857 0 1151.2 910.18 624.67 806.65 975.9 757.82 877.39 818.87 805.18 1323.1 TRUE FALSE FALSE 1016.258081 938.221567 658.4415497 839.5486736 903.9098013 743.3658461 911.2312262 912.0868508 771.9901396 1315.230142 0.772684604 0.713351631 0.500628391 0.63832834 0.687263599 0.565198304 0.692830248 0.6934808 0.586962019 1 10.36109955 -8.140082328 0.651172184 0.982298875 0.630754563 0 0.13858687 0.204045902 0.192575085 0.030781003 0.018525789 7.24E-09 8.140082328 -0.351544312 KPPAPPS(ph)PVQSQS(ph)PS(ph)TNWSPAVPVK ddPTM_HeLa_CUDC101_4h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 KPPAPPS(0.655)PVQS(0.398)QS(0.706)PS(0.458)T(0.439)NWS(0.343)PAVPVK 45.527 0.025929 56724000 2972 2415.4 2000.2 1966.1 2023.5 1990.3 2167.6 1519.5 2535.5 3608.7 TRUE FALSE FALSE 2623.626665 2489.815611 2108.336862 2046.286056 1874.230436 1952.338344 2251.205058 1692.473738 2430.985617 3587.235292 0.731378472 0.694076471 0.587733084 0.570435416 0.522472122 0.544245968 0.62755991 0.471804496 0.677676656 1 11.80865666 -8.139893941 0.36293408 1.051145206 0.510807748 0.445153813 0.105661697 0.21431338 0.069868534 0.047149951 0.023461184 7.25E-09 8.139893941 -0.540337458 GDIPSVEYLLQNGSDPNVK ddPTM_HeLa_CUDC101_4h_R1 1 GDIPSVEYLLQNGSDPNVK 19 0 Q99728-3;Q99728-2;Q99728;A0A087X2H0 Q99728-3 BARD1 BRCA1-associated RING domain protein 1 0 0 57.525 0.03626 20601000 3428.1 3233 2545.8 2823 4401.8 3734 3059 3217.2 2998.4 2608.2 FALSE FALSE TRUE 3026.263315 3332.604898 2683.433649 2938.134142 4077.087984 3662.780171 3176.986655 3583.433044 2874.804683 2592.68631 1.167230799 1.285386853 1.03500128 1.133239347 1.572534235 1.41273557 1.225364843 1.382131355 1.108813153 1 11.34023195 -5.88820172 7.824132017 1.096274389 1.386118645 0.609713633 0.107449423 0.129179553 8.453005663 0.017699915 0.032192944 1.29E-06 5.88820172 0.289844257 IDAGTMAEPSAS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 IDAGTMAEPSASPSK 15 0 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 0 IDAGTMAEPSAS(0.985)PS(0.014)K 159.41 1.14E-07 0 4248.6 3491.8 3061.8 2764.6 3353.6 3143.8 3331.2 3666.1 4088.8 4564.4 TRUE FALSE FALSE 3750.585548 3599.378219 3227.330169 2877.352338 3106.211609 3083.837253 3459.6855 4083.434005 3920.257933 4537.250746 0.826620735 0.793294975 0.711296411 0.634162073 0.684602149 0.67967089 0.76250701 0.899979797 0.864016153 1 12.14760268 -8.133801513 0.653093919 0.985177097 0.724000195 0.466261303 0.079141929 0.29572023 0.280847409 0.033072386 0.020041086 7.35E-09 8.133801513 -0.261176901 SETSS(ph)NPS(ph)SPEICPNK ddPTM_HeLa_CUDC101_4h_R1 1 SETSSNPSSPEICPNK 16 0 A0A1B0GV05;Q684P5-3;Q684P5-2;Q684P5 A0A1B0GV05 RAP1GAP2 Rap1 GTPase-activating protein 2 2 0 SET(0.006)S(0.067)S(0.927)NPS(0.851)S(0.149)PEICPNK 128.9 0.0047244 8332700 2299.2 2129.3 2116.8 2257.4 2269.2 2257.4 2338.8 2405.9 2261 1629.1 TRUE FALSE FALSE 2029.691261 2194.901209 2231.240611 2349.466529 2101.805637 2214.343856 2429.008299 2679.777931 2167.800623 1619.410041 1.253352277 1.355370878 1.37781078 1.450816328 1.29788354 1.367376884 1.499934074 1.654786536 1.338636027 1 10.66125261 -8.128422027 0.060819646 5.19E-14 2.408576761 0.392164593 0.125811522 10.4836404 0.343675104 7.404196755 6.014401479 7.44E-09 8.128422027 2.408576761 GDLGIEIPAEK ddPTM_HeLa_CUDC101_4h_R1 3 GDLGIEIPAEK 11 0 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BR70;P30613-2;P30613 P14618 PKM;PKLR Pyruvate kinase PKM;Pyruvate kinase;Pyruvate kinase PKLR 0 0 ;; ;; 172.56 3.83E-06 68745670 12892.21 11919.81 11008.51 11990.89 12518.84 11495.96 11810.89 11541.86 12260.1 11942.15 FALSE FALSE TRUE 11381.00469 12287.04522 11603.66335 12479.93032 11595.35011 11276.69372 12266.43998 12855.73869 11754.73349 11871.11756 0.958713839 1.035036942 0.977470174 1.05128521 0.976769883 0.949926884 1.033301197 1.082942581 0.990196031 1 13.53516814 -4.515395106 4.478015344 0.986924256 1.074870215 0.45955025 0.030214518 0.118857566 5.911193612 0.004333406 0.022108559 3.05E-05 4.515395106 0.087945959 SPVPSLRPSSTGPS(ph)PSGGLSEEPAAK ddPTM_HeLa_CUDC101_4h_R1 1 SPVPSLRPSSTGPSPSGGLSEEPAAK 26 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 SPVPS(0.034)LRPS(0.192)S(0.192)T(0.249)GPS(0.326)PS(0.006)GGLS(0.001)EEPAAK 62.781 0.0017774 6167100 1458.8 1370 979.46 1055.4 1188.7 1335.5 1016.2 1090.8 1310 1541 TRUE FALSE FALSE 1287.801675 1412.208076 1032.41257 1098.443774 1101.011969 1310.027563 1055.395174 1214.972263 1256.001246 1531.834063 0.840692674 0.921906693 0.673971545 0.717077522 0.718754071 0.855202005 0.68897487 0.793148744 0.819932965 1 10.58104431 -8.128034194 0.451066087 1.006984239 0.740055041 0.266666589 0.086320422 0.4615026 0.222207781 0.051493417 0.026849256 7.45E-09 8.128034194 -0.266929198 LFDDEAS(ph)VDEPRR ddPTM_HeLa_CUDC101_4h_R1 2 LFDDEASVDEPRR 13 1 A0A2R8Y549;Q8NI35-4;Q8NI35-3;Q8NI35-2;Q8NI35;A0A0U1RR46;A0A0X1KG69;A0A087WUZ6;Q8NI35-5 A0A2R8Y549 INADL InaD-like protein 1 0 LFDDEAS(1)VDEPRR;LFDDEAS(1)VDEPRR ; 97.767 0.0059439 6012400 2912.3 2081 2227.3 2372 2463.2 2260.6 2471.3 2391.25 2089.94 2885.2 TRUE FALSE FALSE 2570.924609 2145.113143 2347.714575 2468.740413 2281.494643 2217.482821 2566.618869 2663.460234 2003.791789 2868.038702 0.896405131 0.747937307 0.818578415 0.860776534 0.79548949 0.773170467 0.894903847 0.928669558 0.698662744 1 11.48584878 -8.127645052 0.997263969 0.981396426 0.832311148 0 0.104531347 0.252544215 0.529746194 0.016912586 0.01244266 7.45E-09 8.127645052 -0.149085279 GDMEQNDSDNRR ddPTM_HeLa_CUDC101_4h_R1 3 GDMEQNDSDNRR 12 1 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 0 0 ;; ;; 199.8 1.86E-16 26905100 5568.79 2103.17 6846.2 6762.1 4130.89 3154.15 4300.15 2132.31 6921.5 8630 FALSE FALSE TRUE 4916.024878 2167.966175 7216.326281 7037.887666 3826.162475 3093.989844 4466.008226 2375.043551 6636.19284 8578.668376 0.573052211 0.252715932 0.841194223 0.820393954 0.446008903 0.360660852 0.520594576 0.276854571 0.773569108 1 13.06653801 -13.52287875 0.149394065 2.836115482 0.343598432 0.371258974 0.195536137 41.63807783 0.424585686 22.35025696 0.45360656 3.00E-14 13.52287875 -2.49251705 AQESGQGSTAGPLRPPPPGAGGPAT(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 AQESGQGSTAGPLRPPPPGAGGPATPSK 28 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 AQESGQGSTAGPLRPPPPGAGGPAT(0.732)PS(0.268)K 80.098 9.25E-06 14289000 652.31 509.32 499.16 351.36 713.09 625.28 546.99 468.52 638.57 637.78 TRUE FALSE FALSE 575.8472106 525.0115455 526.1460995 365.6899795 660.4867714 613.3538258 568.0875875 521.854423 612.2478743 633.9864562 0.908295761 0.828111611 0.829901166 0.576810397 1.041799497 0.967455724 0.896056346 0.823131816 0.965711283 1 9.30830821 -8.126493977 1.031257867 0.982534567 0.856350927 0.162135055 0.114639549 0.589811849 1.318322121 0.033659976 0.025069286 7.47E-09 8.126493977 -0.12618364 S(ph)RSESDLSQPESDEEGYALSGR ddPTM_HeLa_CUDC101_4h_R1 1 SRSESDLSQPESDEEGYALSGR 22 1 Q15751;H0YNB1 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 S(0.437)RS(0.437)ES(0.127)DLSQPESDEEGYALSGR 108.28 1.18E-05 14541000 424.3 336.45 304.13 307.45 363.75 412.96 316.93 377.81 328.75 414.93 TRUE FALSE FALSE 374.5641972 346.8156257 320.5721877 319.9891399 336.9168872 405.083476 329.1540963 420.8183632 315.1987859 412.4619779 0.908118123 0.840842658 0.777216337 0.775802758 0.816843504 0.982111074 0.798022882 1.020259771 0.764188708 1 8.688117323 -8.125781915 0.997413821 0.983051559 0.8557273 0 0.105054372 0.401461966 0.84245904 0.02294679 0.016902051 7.49E-09 8.125781915 -0.12732426 GDPESPWWEGR ddPTM_HeLa_CUDC101_4h_R1 1 GDPESPWWEGR 11 0 P52735-3;P52735-2;P52735 P52735-3 VAV2 Guanine nucleotide exchange factor VAV2 0 0 110.53 0.03788 4860400 904.62 807.02 1009.2 927.88 1008.9 993.47 1181.7 984.51 1041.8 1068.1 FALSE FALSE TRUE 798.5818149 831.8833296 1063.760405 965.722957 934.475457 974.521215 1227.278565 1096.582639 998.856563 1061.746894 0.752139535 0.783504369 1.001896413 0.909560426 0.880130154 0.917847013 1.15590502 1.03280984 0.940767116 1 10.05222417 -4.855562058 5.686017932 0.884491463 1.092950862 0.477060681 0.081616129 0.149265188 7.217633215 0.014779606 0.046132923 1.39E-05 4.855562058 0.208459399 S(ph)LGEQDQMTLRPPEK ddPTM_HeLa_CUDC101_4h_R1 3 SLGEQDQMTLRPPEK 15 1 P48681 P48681 NES Nestin 1 0 S(0.848)LGEQDQMT(0.152)LRPPEK;S(1)LGEQDQMTLRPPEK;S(1)LGEQDQMTLRPPEK ;; 114.01 0.0089452 109137000 5382.51 4101.97 3960.64 4255.57 4285.7 4551.08 4091.66 4215.86 4170.48 5485.9 TRUE FALSE FALSE 4751.580337 4228.346834 4174.764179 4429.130539 3969.552449 4464.275732 4249.476697 4695.776461 3998.571049 5453.269623 0.871326867 0.775378282 0.765552497 0.81219724 0.727921545 0.818642033 0.779252997 0.861093763 0.733242866 1 12.41290577 -8.125168403 0.72173162 0.986378025 0.787272314 0 0.087625898 0.17599953 0.201436267 0.015050957 0.009652488 7.50E-09 8.125168403 -0.199105711 SMGTGDTPGLEVPS(ph)SPLR ddPTM_HeLa_CUDC101_4h_R1 2 SMGTGDTPGLEVPSSPLR 18 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SMGTGDTPGLEVPS(0.5)S(0.5)PLR;SMGTGDTPGLEVPS(0.5)S(0.5)PLR ; 165.16 2.14E-05 71368000 6102.6 4875.2 4627.2 4549.8 5218 4734.9 4637.2 5284.2 5411.1 6171.2 TRUE FALSE FALSE 5387.262479 5025.399133 4877.360429 4735.36051 4833.078536 4644.589671 4816.058357 5885.731969 5188.052168 6134.493428 0.878191907 0.819203605 0.795071425 0.771923642 0.787852916 0.757126848 0.785078412 0.959448737 0.845718107 1 12.5827285 -8.124364328 0.679615066 0.988622151 0.801486911 0.190991545 0.070277086 0.285138879 0.291877049 0.022820187 0.014217266 7.51E-09 8.124364328 -0.187135239 EKENLS(ph)Y(ph)DLVPLK ddPTM_HeLa_CUDC101_4h_R1 1 EKENLSYDLVPLK 13 1 Q92598-2;Q92598-3;Q92598;Q92598-4;R4GN69;A0A0A0MSM0 Q92598-2 HSPH1 Heat shock protein 105 kDa 2 0 EKENLS(1)Y(1)DLVPLK 78.964 0.023476 15737000 2295.7 1743.2 1805.1 1534.3 2057.9 1962.6 1726.1 1594.2 1943.3 2370 TRUE FALSE FALSE 2026.601526 1796.905926 1902.689166 1596.875386 1906.092817 1925.166675 1792.676255 1775.677284 1863.196351 2355.903135 0.860222772 0.762724876 0.80762623 0.677818779 0.809070963 0.817167161 0.760929526 0.753714046 0.790862886 1 11.20206451 -8.123994712 0.611524874 0.992519258 0.763582883 0.149415117 0.073764951 0.204524643 0.172176068 0.019913814 0.011781454 7.52E-09 8.123994712 -0.228936375 WYLENVY(ph)PEMRVY(ph)NNT(ph) ddPTM_HeLa_CUDC101_4h_R1 1 WYLENVYPEMRVYNNT 16 1 F5H557 F5H557 GALNT9 3 0 WYLENVY(1)PEMRVY(1)NNT(1) 51.566 0.037355 12588000 3789.3 3126.7 3158 2756.9 3214.3 3291.6 3240.5 3353.9 3701.3 3569.5 TRUE FALSE FALSE 3345.123998 3223.029921 3328.731032 2869.338298 2977.187493 3228.818214 3365.48717 3735.694419 3548.730847 3548.268455 0.942748284 0.908338803 0.938128294 0.80865874 0.83905362 0.909970104 0.948487188 1.05282181 1.000130315 1 11.79289945 -8.123945318 0.84985961 0.9911461 0.910221465 0.214743637 0.062097041 0.61260751 0.951256971 0.021640543 0.014984573 7.52E-09 8.123945318 -0.080924635 RS(ph)ASASHQADIK ddPTM_HeLa_CUDC101_4h_R1 1 RSASASHQADIK 12 1 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 RS(0.818)AS(0.175)AS(0.007)HQADIK 65.528 0.035547 1693800 2306.8 677.12 1635.4 1996.7 1825.3 1421.1 1803.1 987.25 1957.4 2778.5 TRUE FALSE FALSE 2036.400401 697.9812646 1723.814671 2078.134056 1690.651256 1393.994885 1872.646171 1099.634549 1876.715144 2761.973358 0.737299074 0.252711078 0.624124293 0.752409161 0.612117148 0.504709751 0.678010222 0.398133655 0.679483434 1 11.43148369 -8.122712576 0.998553942 0.953373565 0.564930804 0.253631597 0.168396795 0.246477627 0.518444865 0.042944221 0.031703335 7.54E-09 8.122712576 -0.388442761 GSQEDDPAATQRPPS(ph)NGGAK ddPTM_HeLa_CUDC101_4h_R1 2 GSQEDDPAATQRPPSNGGAK 20 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 GSQEDDPAAT(0.004)QRPPS(0.996)NGGAK;GSQEDDPAAT(0.014)QRPPS(0.986)NGGAK ; 59.646 0.014673 17025100 5857.8 4385.8 4549.1 4473.6 3974.3 4014.1 3787.7 3703.1 6237.4 6735.9 TRUE FALSE FALSE 5171.157564 4520.9213 4795.038106 4656.052745 3681.123807 3937.53773 3933.792858 4124.645936 5980.291732 6695.834567 0.772294702 0.675184139 0.716122547 0.695365559 0.549763255 0.588057798 0.587498514 0.616001769 0.893136124 1 12.70904817 -8.122626037 0.297820009 1.077733302 0.547189627 0.880390243 0.047340167 0.294785848 0.069698101 0.061470282 0.031480149 7.54E-09 8.122626037 -0.530543675 SLS(ph)VPVDLSR ddPTM_HeLa_CUDC101_4h_R1 2 SLSVPVDLSR 10 0 Q9NYF3;D6RHW3 Q9NYF3 FAM53C Protein FAM53C 1 0 S(0.001)LS(0.999)VPVDLSR;S(0.002)LS(0.997)VPVDLS(0.001)R ; 110.93 0.0080317 178533000 5809.3 5548.4 4533.9 6241.5 6728 6619.7 5510.3 5023.8 4192.9 3801.4 TRUE FALSE FALSE 5128.34266 5719.339628 4779.016348 6496.055348 6231.688844 6493.440252 5722.834117 5595.689085 4020.066887 3778.789104 1.357139157 1.513537663 1.264695175 1.719083857 1.649123217 1.718391811 1.514462427 1.480815397 1.063850556 1 11.88370829 -8.122418155 0.409013093 0.961654349 1.623694656 0.758295563 0.118708397 0.392654358 0.15900989 0.107464767 0.055107377 7.54E-09 8.122418155 0.662040307 SSSQLGS(ph)PDVSHLIR ddPTM_HeLa_CUDC101_4h_R1 2 SSSQLGSPDVSHLIR 15 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 S(0.001)S(0.002)S(0.005)QLGS(0.993)PDVSHLIR;SSS(0.002)QLGS(0.997)PDVSHLIR ; 72.585 0.022126 34449000 3633.4 3056.5 2633.7 2555.3 3410.9 3216.5 3164.2 2583.8 3696.4 3566.9 TRUE FALSE FALSE 3207.49836 3150.667142 2776.085789 2659.516179 3159.284702 3155.150622 3286.244254 2877.929348 3544.032827 3545.68392 0.9046205 0.888592219 0.782947903 0.750071422 0.891022656 0.889856708 0.926829443 0.811671151 0.999534337 1 11.79184822 -8.119163211 0.785190828 0.986973696 0.849142945 0.554346611 0.052795536 0.341338095 0.457275096 0.020309192 0.013620142 7.60E-09 8.119163211 -0.137830751 GDRSEDFGVNEDLADSDAR ddPTM_HeLa_CUDC101_4h_R1 4 GDRSEDFGVNEDLADSDAR 19 1 P04083 P04083 ANXA1 Annexin A1 0 0 ;;; ;;; 285.04 1.16E-102 82989000 4595.72 5124.91 4870.24 4693.75 6229.17 4695.88 4498.4 4750.95 5158.18 4802.81 FALSE FALSE TRUE 4057.016668 5282.802403 5133.539906 4885.181413 5769.656539 4606.313913 4671.904795 5291.778944 4945.557637 4774.242673 0.849771775 1.10652155 1.07525743 1.02323693 1.208496705 0.964826095 0.978564584 1.108401752 1.035883171 1 12.22105618 -7.251862652 24.99018727 0.929058893 1.063319112 0.228683222 0.081448917 547.5866745 1428912.582 0.013982601 0.017008423 5.60E-08 7.251862652 0.134260219 GEAS(ph)SLNGESH ddPTM_HeLa_CUDC101_4h_R1 1 GEASSLNGESH 11 0 Q8IY57-5;Q8IY57-3;Q8IY57 Q8IY57-5 YAF2 YY1-associated factor 2 1 0 GEAS(0.623)S(0.377)LNGESH 130.01 8.02E-05 0 1590.6 1391.3 1326.9 1153.6 1228.9 1383.5 1267.7 1359.8 1263.2 1580.2 TRUE FALSE FALSE 1404.152279 1434.164304 1398.636228 1200.648794 1138.246495 1357.112043 1316.595614 1514.594135 1211.130361 1570.8009 0.893908502 0.913014694 0.890396885 0.764354537 0.724628115 0.863961844 0.83816836 0.964217766 0.77102729 1 10.61728461 -8.119035998 0.538131832 0.99589803 0.835335857 0 0.093819449 0.563151042 0.374915664 0.038167547 0.021388262 7.60E-09 8.119035998 -0.160562172 GALQNIIPAS(ph)TGAAK ddPTM_HeLa_CUDC101_4h_R1 1 GALQNIIPASTGAAK 15 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 GALQNIIPAS(0.914)T(0.086)GAAK 200.63 1.70E-16 240330000 4439.3 3544.2 3595.3 3246.8 3626.4 4325.1 3575.1 3800.1 3523.2 4216.6 TRUE FALSE FALSE 3918.931984 3653.392601 3789.672793 3379.218538 3358.887697 4242.605924 3712.992805 4232.688023 3377.972205 4191.519476 0.934966903 0.871615323 0.904128638 0.806203707 0.801353236 1.01218805 0.885834559 1.009821867 0.80590636 1 12.03325762 -8.118084471 0.966302865 0.988378191 0.896561867 0 0.088554568 0.494947386 0.978748062 0.020215686 0.01479152 7.62E-09 8.118084471 -0.091816324 HSEEAEFTPPLKCS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 HSEEAEFTPPLKCSPK 16 1 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 0 HSEEAEFT(0.005)PPLKCS(0.994)PK;HSEEAEFTPPLKCS(1)PK ; 72.681 0.012934 214810000 19604.6 17912.4 19248.4 18414.1 19620.8 17606 16255.1 17949.4 18836 15397.8 TRUE FALSE FALSE 17306.57851 18464.25981 20289.02673 19165.10659 18173.41267 17270.19488 16882.06465 19992.68714 18059.57211 15306.2132 1.130689758 1.206324489 1.325541887 1.252112873 1.187322588 1.128312709 1.102955018 1.306181149 1.179885049 1 13.90182978 -8.111398343 0.879401704 1.020906813 1.210183705 0.171553819 0.084629413 0.285115874 0.472365597 0.023560861 0.016692831 7.74E-09 8.111398343 0.189276891 TVLEGSTAST(ph)SPADHSALPNQSLTVR ddPTM_HeLa_CUDC101_4h_R1 2 TVLEGSTASTSPADHSALPNQSLTVR 26 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 T(0.001)VLEGS(0.017)T(0.054)AS(0.178)T(0.731)S(0.02)PADHSALPNQSLTVR;T(0.001)VLEGS(0.025)T(0.083)AS(0.177)T(0.6)S(0.114)PADHSALPNQSLTVR ; 119.97 7.64E-10 105294000 1073.96 867.44 850.05 562.46 1188.54 871.91 818.26 976.76 1123.33 1054.44 TRUE FALSE FALSE 948.0720368 894.1647982 896.0062743 585.39955 1100.863772 855.2797695 849.8205623 1087.95041 1077.025862 1048.168144 0.904503769 0.853073816 0.854830668 0.55849775 1.050274022 0.815975733 0.810767401 1.037954088 1.027531573 1 10.03365445 -8.106295667 0.896528916 0.983975557 0.848840882 0.178202551 0.129172494 0.650987669 1.118612771 0.03844952 0.02754743 7.83E-09 8.106295667 -0.135134674 SAS(ph)TFQIHERTHTGEK ddPTM_HeLa_CUDC101_4h_R1 1 SASTFQIHERTHTGEK 16 1 A0A494C0J2;P52737 A0A494C0J2 ZNF136 Zinc finger protein 136 1 0 S(0.076)AS(0.462)T(0.462)FQIHERTHTGEK 85.362 0.0016329 0 1529.4 1430.3 1418.5 1624.2 1261.2 1569.4 1268.4 1246.5 1388.4 1214.2 TRUE FALSE FALSE 1350.12605 1474.365848 1495.188401 1690.441896 1168.163789 1539.46631 1317.322613 1388.396521 1331.169564 1206.977884 1.118600488 1.221535097 1.238786907 1.400557474 0.967841916 1.275471846 1.091422328 1.15030817 1.102894744 1 10.23718353 -8.104458434 0.976255098 1.021620001 1.190226798 0.179916684 0.112155802 0.416246835 0.839856891 0.031131163 0.02305557 7.86E-09 8.104458434 0.168606797 GT(ph)SPRPPEGGLGYSQLGDDDLK ddPTM_HeLa_CUDC101_4h_R1 1 GTSPRPPEGGLGYSQLGDDDLK 22 1 P21127;P21127-8;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-9;P21127-2;P21127-3;P21127-6;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 GT(0.5)S(0.5)PRPPEGGLGYSQLGDDDLK 68.587 0.0043737 94436000 2405.6 1984.2 2131.5 1879.8 1783.3 2101.2 1783.3 1838.4 2191.2 2433.4 TRUE FALSE FALSE 2123.619215 2045.33085 2246.735337 1956.466369 1651.749512 2061.123111 1852.082478 2047.676025 2100.877809 2418.926029 0.877918212 0.845553285 0.928815231 0.808816122 0.68284416 0.85208191 0.765663132 0.846522796 0.868516765 1 11.24015094 -8.104159119 0.317648708 1.030024562 0.776648758 0.291304598 0.068684118 0.808964579 0.214551637 0.081628663 0.042216849 7.87E-09 8.104159119 -0.253375804 TEEARPSPAPGPGT(ph)PTGTPTR ddPTM_HeLa_CUDC101_4h_R1 3 TEEARPSPAPGPGTPTGTPTR 21 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 TEEARPSPAPGPGT(0.497)PT(0.103)GT(0.33)PT(0.07)R;TEEARPSPAPGPGT(0.803)PT(0.175)GT(0.018)PT(0.004)R;T(0.001)EEARPSPAPGPGT(0.608)PT(0.32)GT(0.041)PT(0.029)R ;; 106.67 4.28E-05 453356000 3107.53 2489.99 2223.65 2353.38 2565.96 2898.34 2524.51 2625.02 2716.36 3030.87 TRUE FALSE FALSE 2743.270044 2566.703641 2343.867245 2449.361009 2376.674243 2843.058993 2621.881196 2923.841666 2604.390491 3012.84225 0.910525615 0.851921019 0.777958834 0.812973533 0.788847887 0.943646815 0.87023514 0.970459594 0.864429756 1 11.55690942 -8.103970045 0.970157471 0.983671301 0.857679198 0.04898409 0.070253317 0.332306052 0.662620339 0.018545116 0.013708042 7.87E-09 8.103970045 -0.125992103 SLSS(ph)PTDNLELSLR ddPTM_HeLa_CUDC101_4h_R1 1 SLSSPTDNLELSLR 14 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 SLS(0.074)S(0.883)PT(0.043)DNLELSLR 251.28 3.74E-56 104910000 4066.4 3262.5 3354.7 3310.1 3586.3 3492.7 3660.9 2930.9 3923.2 3802.3 TRUE FALSE FALSE 3589.742756 3363.013758 3536.065229 3445.100185 3321.745794 3426.082567 3802.102139 3264.541809 3761.484035 3779.68375 0.949746855 0.88976062 0.935545263 0.911478423 0.878842256 0.906446886 1.005931287 0.86370766 0.995184858 1 11.88404981 -8.103772843 0.785013726 0.993553346 0.915265482 0.430184057 0.037538582 0.380215218 0.509649082 0.012773232 0.008663171 7.87E-09 8.103772843 -0.078287864 VLSEPIGPES(ph)PSSTECPR ddPTM_HeLa_CUDC101_4h_R1 2 VLSEPIGPESPSSTECPR 18 0 Q56NI9;Q56NI9-2 Q56NI9 ESCO2 N-acetyltransferase ESCO2 1 0 VLSEPIGPES(0.986)PS(0.01)S(0.003)T(0.001)ECPR;VLSEPIGPES(0.992)PS(0.006)S(0.002)TECPR ; 199.61 7.31E-17 34160000 4416.2 4884.4 4976.7 5267.4 5755.1 5578.2 4251.3 3450.7 3854.5 2153 TRUE FALSE FALSE 3898.539731 5034.882575 5245.755456 5482.22734 5330.557739 5471.805129 4415.274065 3843.51374 3695.615879 2140.19386 1.821582522 2.352535753 2.451065557 2.561556428 2.490689202 2.556686677 2.063025293 1.795871772 1.726766882 1 11.06352577 -8.102803114 0.742898913 1.098102375 2.35479454 0.562079347 0.315893166 0.193683105 0.2343213 0.103879372 0.068735959 7.89E-09 8.102803114 1.256692164 SGSMEEDVDTSPGGDYYTSPS(ph)SPTSSSR ddPTM_HeLa_CUDC101_4h_R1 2 SGSMEEDVDTSPGGDYYTSPSSPTSSSR 28 0 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 0 SGSMEEDVDTSPGGDYYTSPS(0.362)S(0.362)PT(0.193)S(0.062)S(0.02)S(0.001)R;SGSMEEDVDTSPGGDYYTSPS(0.893)S(0.104)PT(0.002)S(0.001)SSR ; 182.78 2.15E-22 47990000 16233.2 13144.9 11782.9 11615.2 14562.2 13034.9 12003.1 11596.4 15115.8 16878.5 TRUE FALSE FALSE 14330.3689 13549.87879 12419.91922 12088.91806 13487.97552 12786.281 12466.06359 12916.4873 14492.72033 16778.10593 0.854111243 0.807592874 0.740245607 0.720517448 0.803903347 0.762081313 0.74299588 0.769841802 0.863787628 1 14.03429224 -8.101297001 0.532835826 0.998615393 0.749584024 0.644890095 0.046971679 0.159645217 0.104764327 0.016684002 0.009466637 7.92E-09 8.101297001 -0.249031369 LALDGETLGEEEQEDEQPPWAS(ph)PSPTSR ddPTM_HeLa_CUDC101_4h_R1 1 LALDGETLGEEEQEDEQPPWASPSPTSR 28 0 A0A0G2JMS7;A0A0G2JNZ2;A0A669KB89;Q14160-2;Q14160;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 0 LALDGETLGEEEQEDEQPPWAS(0.564)PS(0.221)PT(0.089)S(0.126)R 58.111 0.0020126 5629000 796.96 538.61 552.96 651.58 567.19 571.38 543.58 564.05 624.3 880.48 TRUE FALSE FALSE 703.5415569 555.2039357 582.8546902 678.1542488 525.3495237 560.4818785 564.5460627 628.259172 598.5660898 875.2428658 0.803824383 0.634342715 0.665934808 0.774818368 0.600232854 0.640372976 0.645016469 0.717811246 0.683885711 1 9.773539587 -8.101251545 0.575272122 0.994406573 0.654095934 0.073357025 0.108137318 0.194524811 0.146846175 0.027863281 0.016346539 7.92E-09 8.101251545 -0.340310639 LQSIGT(ph)ENTEENR ddPTM_HeLa_CUDC101_4h_R1 2 LQSIGTENTEENR 13 0 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8;H3BR04;H3BMQ8 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 LQS(0.002)IGT(0.998)ENTEENR;LQS(0.193)IGT(0.749)ENT(0.059)EENR ; 263.72 2.02E-69 48586000 2109.6 1586.61 1689.95 1895.95 1639.93 1820.16 1502.56 1767.57 1780.91 2037.22 TRUE FALSE FALSE 1862.315886 1635.491574 1781.313809 1973.275036 1518.955631 1785.443481 1560.514243 1968.783024 1707.500136 2025.102525 0.919615606 0.807609271 0.879616606 0.974407474 0.750063571 0.881655846 0.770585303 0.972189309 0.843167255 1 10.98377923 -8.099189306 0.623998314 0.995892344 0.855588937 0 0.085917154 0.517815088 0.453966939 0.030651865 0.018712245 7.96E-09 8.099189306 -0.140303407 GDSK(ac)NAK(ac)K(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 GDSKNAKKK 9 3 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 3 ; GDSK(1)NAK(1)K(1)K;GDSK(1)NAK(1)K(1)K 137.46 0.030651 43375000 12178.1 8496 7951.9 7598.7 6532.3 6584.2 6081.3 5387.1 6701.3 8175.3 FALSE TRUE FALSE 10750.60158 8757.75169 8381.803767 7908.60783 6050.425243 6458.617355 6315.857778 6000.345689 6425.069578 8126.672952 1.32287858 1.07765524 1.031394252 0.973166741 0.744514425 0.794743112 0.77717632 0.738352057 0.790615005 1 12.98844912 -6.121319631 1.429734875 1.150052394 0.759776634 0.398790432 0.139818834 0.183220321 0.737450722 0.020372611 0.041097486 7.56E-07 6.121319631 -0.39027576 ALES(ph)PERPFLAILGGAK ddPTM_HeLa_CUDC101_4h_R1 2 ALESPERPFLAILGGAK 17 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 1 0 ALES(1)PERPFLAILGGAK;ALES(1)PERPFLAILGGAK ; 118.23 0.0016255 1413130000 427.679 286.61 244.908 354.11 424.64 370.47 269.34 283.604 194.48 456.57 TRUE FALSE FALSE 377.5471159 295.4401144 258.1484673 368.5521364 393.3151532 363.403902 279.728534 315.888333 186.4634521 453.8543013 0.831868542 0.650958057 0.568791497 0.812049451 0.866611051 0.800706088 0.616339943 0.696012646 0.410844299 1 8.82608542 -8.098424486 0.943949548 0.970963611 0.722236061 0 0.199227924 0.278686811 0.527875289 0.030480469 0.022385609 7.97E-09 8.098424486 -0.24872755 ANTIPIIGS(ph)PSSK ddPTM_HeLa_CUDC101_4h_R1 2 ANTIPIIGSPSSK 13 0 E9PGM7;O94988-6;O94988-5;O94988-1;O94988 E9PGM7 FAM13A Protein FAM13A 1 0 ANT(0.003)IPIIGS(0.923)PS(0.037)S(0.037)K;ANTIPIIGS(0.998)PS(0.001)SK ; 138.81 0.00079617 42864000 5888 5863.1 5281.6 5240.5 5962.8 5362.1 5241.6 4868.6 5000.7 4735 TRUE FALSE FALSE 5197.817566 6043.735162 5567.139272 5454.230241 5522.936124 5259.826876 5443.770268 5422.821744 4794.569029 4706.836009 1.104312442 1.28403351 1.182777403 1.158789095 1.173386137 1.11748675 1.156566801 1.152116142 1.018639489 1 12.20054187 -8.097899415 1.125034024 1.02145539 1.170048319 0.660141875 0.045271197 0.193283105 0.510668804 0.013142615 0.01021858 7.98E-09 8.097899415 0.148592929 ASPEPQRENAS(ph)PAPGTTAEEAMSR ddPTM_HeLa_CUDC101_4h_R1 1 ASPEPQRENASPAPGTTAEEAMSR 24 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 ASPEPQRENAS(0.823)PAPGT(0.073)T(0.099)AEEAMS(0.004)R 56.009 0.034232 10538000 1458.9 1435.4 1403.7 1123.6 1597.1 1383.8 1268 1390.1 1491.9 1144 TRUE FALSE FALSE 1287.889954 1479.622973 1479.588268 1169.425265 1479.285115 1357.406321 1316.907185 1548.343365 1430.403251 1137.195437 1.132514176 1.301115819 1.301085301 1.028341503 1.300818722 1.193643833 1.158030662 1.361545531 1.257834145 1 10.1512645 -8.096870666 0.821800865 1.0181435 1.227599211 0 0.119444116 0.335978408 0.490714187 0.03027311 0.021056438 8.00E-09 8.096870666 0.209455712 MVIQGPSS(ph)PQGEAMVTDVLEDQK ddPTM_HeLa_CUDC101_4h_R1 2 MVIQGPSSPQGEAMVTDVLEDQK 23 0 Q12888;Q12888-3;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 MVIQGPS(0.163)S(0.837)PQGEAMVTDVLEDQK;MVIQGPS(0.345)S(0.655)PQGEAMVTDVLEDQK ; 120.61 1.96E-07 34809000 11992.9 9178.5 8444.7 9165.9 9559.2 9491.8 9016 8194.9 10346.9 12739.3 TRUE FALSE FALSE 10587.11044 9461.278706 8901.246026 9539.72502 8854.036861 9310.759729 9363.75014 9127.774291 9920.396403 12663.52608 0.836031795 0.7471283 0.702904228 0.753322966 0.699176265 0.735242276 0.739426767 0.720792474 0.783383423 1 13.62839155 -8.096831161 0.569438484 0.994788254 0.716514956 0.369500362 0.067513158 0.117664667 0.087246345 0.013755979 0.008065515 8.00E-09 8.096831161 -0.278273297 LADPVPSGGSSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 LADPVPSGGSSSPR 14 0 Q96DN6 Q96DN6 MBD6 Methyl-CpG-binding domain protein 6 1 0 LADPVPS(0.073)GGS(0.243)S(0.243)S(0.442)PR;LADPVPS(0.001)GGS(0.033)S(0.16)S(0.806)PR ; 118.73 0.0015398 11618600 4443.9 3674.5 3463.8 3852.8 3400.9 3324.7 4232.3 3182.2 4300.5 4343.3 TRUE FALSE FALSE 3922.992779 3787.70699 3651.063505 4009.933837 3150.022383 3261.286887 4395.541229 3544.448785 4123.23157 4317.465858 0.908633191 0.877298655 0.845649653 0.928770248 0.729599836 0.755370626 1.01808361 0.820955834 0.955011969 1 12.07596905 -8.093079128 0.553075306 0.997066747 0.84659949 0.287400492 0.077810586 0.654118604 0.460169374 0.041255946 0.023963414 8.07E-09 8.093079128 -0.150467258 AKPPADPAAAAS(ph)PCR ddPTM_HeLa_CUDC101_4h_R1 4 AKPPADPAAAASPCR 15 1 Q9GZT9;Q9GZT9-2 Q9GZT9 EGLN1 Egl nine homolog 1 1 0 AKPPADPAAAAS(1)PCR;AKPPADPAAAAS(1)PCR;AKPPADPAAAAS(1)PCR;AKPPADPAAAAS(1)PCR ;;; 156.29 0.00047722 143092000 16301.8 14207.1 14463.5 13855.1 16523.5 15006 15085.3 12300.9 15248.7 13724.3 TRUE FALSE FALSE 14390.92772 14644.80391 15245.44056 14420.17086 15304.59432 14719.78555 15667.14507 13701.18473 14620.14213 13642.66725 1.05484708 1.073456065 1.117482401 1.056990587 1.12181834 1.078952178 1.14839311 1.004289299 1.071648371 1 13.73583811 -8.09258868 0.614374061 1.003571841 1.092169232 0.102901891 0.043112655 0.424557763 0.362028325 0.015822178 0.009643403 8.08E-09 8.09258868 0.088597392 GDYDAFFEAR ddPTM_HeLa_CUDC101_4h_R1 1 GDYDAFFEAR 10 0 O75368 O75368 SH3BGRL SH3 domain-binding glutamic acid-rich-like protein 0 0 114.86 0.036301 60818000 3770 3540.2 3392.9 3528.2 3705 3137.8 2862 2903.7 3370.1 3400.3 FALSE FALSE TRUE 3328.086315 3649.269366 3576.330437 3672.095246 3431.689531 3077.951693 2972.388299 3234.245471 3231.183052 3380.074864 0.984619113 1.07964158 1.058062493 1.086394649 1.015270273 0.910616426 0.879385344 0.956856165 0.955950143 1 11.72283949 -5.261053695 24.48158574 1.012795189 0.911995907 0.557954498 0.043826176 16.48721747 1046463.804 0.006648317 0.015868355 5.48E-06 5.261053695 -0.100799282 EASQTSSS(ph)PAPK ddPTM_HeLa_CUDC101_4h_R1 1 EASQTSSSPAPK 12 0 Q5T8J1;P30281-4;P30281-2;P30281-3;P30281 Q5T8J1 CCND3 G1/S-specific cyclin-D3 1 0 EAS(0.016)QT(0.016)S(0.016)S(0.004)S(0.947)PAPK 104.41 0.0010559 0 1819.5 1268.2 1732.7 1662.5 1391.3 963.52 1128.2 314.81 1795.9 1855.3 TRUE FALSE FALSE 1606.220968 1307.271739 1826.375003 1730.303936 1288.666571 945.1424613 1171.715052 350.6466979 1721.872242 1844.264593 0.870927618 0.708830904 0.990299879 0.938208076 0.698742781 0.512476607 0.635329148 0.190128195 0.93363623 1 10.84882994 -4.52052164 0.58368713 0.937106248 8.69E-18 0.788263218 0.111893884 0.938579031 0.259663096 0.021685151 0.55652643 3.02E-05 4.52052164 -0.937106248 down NSASATTPLS(ph)GNSSR ddPTM_HeLa_CUDC101_4h_R1 3 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 NSASATT(0.012)PLS(0.987)GNSSR;NSASAT(0.001)T(0.226)PLS(0.773)GNSSR;NSASAT(0.028)T(0.228)PLS(0.656)GNS(0.054)S(0.035)R ;; 231.41 4.30E-43 246976000 8951.6 8052.2 7775.4 8340.4 9095.1 7604.4 7604.5 7752.7 8453.3 7472.5 TRUE FALSE FALSE 7902.307018 8300.278738 8195.761643 8680.557562 8424.172593 7459.35874 7897.808112 8635.236031 8104.851396 7428.053238 1.063846309 1.117423162 1.103352572 1.168618114 1.134102345 1.004214496 1.063240645 1.162516713 1.0911138 1 12.85876844 -8.09169108 0.851296392 1.009848819 1.104918552 0.111142282 0.052634669 0.385059465 0.600892813 0.015789173 0.011187066 8.10E-09 8.09169108 0.095069734 DPSIKPVTPS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 DPSIKPVTPSPSK 13 1 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 DPSIKPVT(0.014)PS(0.624)PS(0.361)K 69.314 0.030225 35868000 4527.4 3470.3 3741.2 3405.8 3159.9 3142.7 3071 3016.7 3443.1 5083.8 TRUE FALSE FALSE 3996.705035 3577.21583 3943.460589 3544.703245 2926.800472 3082.758234 3189.449499 3360.108934 3301.173961 5053.561332 0.790869008 0.707860377 0.780332983 0.701426779 0.579156021 0.610016982 0.631129077 0.664899209 0.653237142 1 12.30308472 -8.088765526 0.296365388 1.068374958 0.586559625 0.025826711 0.114348474 0.373677638 0.089372433 0.070924461 0.037524952 8.15E-09 8.088765526 -0.481815333 FDALKDDDS(ph)GDHDQNEENSTQK ddPTM_HeLa_CUDC101_4h_R1 1 FDALKDDDSGDHDQNEENSTQK 22 1 B4E1E4;B9A023;B8ZZL3;B9A044;B8ZZ50;O60573-2;O60573 B4E1E4 EIF4E2 Eukaryotic translation initiation factor 4E type 2 1 0 FDALKDDDS(1)GDHDQNEENSTQK 72.566 0.0015875 9107600 1482 810.75 1007.2 827.84 995.04 1109.6 965.24 851.53 1203.4 1814.9 TRUE FALSE FALSE 1308.282207 835.7282465 1061.652279 861.6028934 921.6378816 1088.436229 1002.46963 948.4647332 1153.795343 1804.104894 0.725169701 0.46323706 0.588464829 0.477579156 0.51085604 0.603310945 0.555660391 0.525725936 0.639538946 1 10.81706751 -8.084232285 0.692225255 0.973607297 0.526329183 0.377955712 0.118486793 0.134807191 0.143294167 0.025422674 0.016511355 8.24E-09 8.084232285 -0.447278114 AGFNYES(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 3 AGFNYESPSK 10 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;H0YC29;E5RJ97;E7EVN4;F8W8T0 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 AGFNYES(0.882)PS(0.118)K;AGFNYES(0.814)PS(0.186)K;AGFNYES(0.982)PS(0.018)K ;; 134.49 0.0018201 37259300 6444.4 5022.9 5391.9 4675 5281.4 4959 3769.1 3090.72 6467.4 7094.4 TRUE FALSE FALSE 5688.997201 5177.649595 5683.402424 4865.666707 4891.801644 4864.415337 3914.47545 3442.555072 6200.811035 7052.202193 0.806697971 0.734189045 0.805904633 0.689949972 0.693655898 0.689772528 0.555071358 0.488153201 0.879273008 1 12.78385812 -4.516086468 0.121912411 1.167887145 4.51E-15 0.867546159 0.051507137 5.616307493 0.12499913 0.263270573 1.17201914 3.05E-05 4.516086468 -1.167887145 down SSFASSSASDASKPS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 SSFASSSASDASKPSSPR 18 1 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 SSFASSSASDAS(0.003)KPS(0.75)S(0.247)PR 284.84 2.81E-103 19697000 2096.1 1956 1390.2 1507.7 1929.9 1510.1 1579.1 1352 2245.6 2253.9 TRUE FALSE FALSE 1850.398335 2016.262042 1465.358417 1569.190523 1787.535122 1481.297358 1640.006416 1505.906215 2153.035418 2240.493703 0.825888657 0.899918638 0.654033714 0.700377118 0.797830907 0.661147745 0.73198439 0.672131421 0.960964726 1 11.12960096 -8.078421823 0.294020374 1.054934732 0.663792845 0.754606234 0.060089165 0.637461491 0.151440339 0.098181081 0.052512729 8.35E-09 8.078421823 -0.391141887 MAEESSSSSSSSS(ph)PTAATSQQQQLK ddPTM_HeLa_CUDC101_4h_R1 2 MAEESSSSSSSSSPTAATSQQQQLK 25 0 A0A669KAX4;Q13620-1;Q13620;A0A669KAU9;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 1 0 MAEESSSSSSS(0.001)S(0.024)S(0.973)PT(0.002)AATSQQQQLK;MAEESSSSSS(0.004)S(0.017)S(0.075)S(0.603)PT(0.295)AAT(0.003)S(0.001)QQQQLK ; 183.07 3.85E-17 31112000 8453.8 6896.3 6350.3 6803.4 7755.4 7310 6333.6 6534.4 8033.9 8188.9 TRUE FALSE FALSE 7462.858379 7108.766829 6693.616427 7080.872059 7183.299593 7170.573929 6577.889074 7278.249683 7702.739242 8140.192059 0.916791438 0.873292273 0.822292199 0.869865478 0.882448417 0.880885104 0.808075415 0.894112772 0.946260136 1 12.99084712 -8.075553762 0.629844694 0.994183505 0.856228694 0.661132239 0.03086735 0.214455345 0.191783947 0.012378123 0.007745776 8.40E-09 8.075553762 -0.137954811 GEAHLAVNDFELAR ddPTM_HeLa_CUDC101_4h_R1 2 GEAHLAVNDFELAR 14 0 Q02790 Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" 0 0 ; ; 149.32 0.00023649 18004200 9714.9 7562.8 7166.4 7280.2 7385.8 7571.9 6641.3 6112.8 8383 8382.6 FALSE FALSE TRUE 8576.134149 7795.800904 7553.837261 7577.118024 6840.964249 7427.478623 6897.457166 6808.656443 8037.449192 8332.739922 1.029209387 0.935562729 0.906525024 0.909318915 0.820974171 0.891360908 0.827753804 0.817096958 0.964562589 1 13.02457524 -6.625783674 1.027572952 1.014819584 0.842125776 0.796885579 0.031747293 0.116605775 0.246179368 0.005395961 0.00905172 2.37E-07 6.625783674 -0.172693809 VPS(ph)VESLFR ddPTM_HeLa_CUDC101_4h_R1 2 VPSVESLFR 9 0 Q13439-3;Q13439-4;Q13439;Q13439-5;E7EVX2;Q86W71 Q13439-3 GOLGA4 Golgin subfamily A member 4 1 0 VPS(1)VESLFR;VPS(0.993)VES(0.007)LFR ; 144.55 0.0012904 122932000 1832.79 1264.32 1392.35 1464.31 1318.56 1408.35 1285.95 1500.84 1267.97 1921.75 TRUE FALSE FALSE 1617.953135 1303.272201 1467.624653 1524.030891 1221.292456 1381.48807 1335.549522 1671.689559 1215.70374 1910.319346 0.846954274 0.6822274 0.76826142 0.797788545 0.639313243 0.723171272 0.699123696 0.875083825 0.636387703 1 10.89959812 -8.068314185 0.697663517 0.984792647 0.732571883 0 0.127441261 0.242347956 0.261661429 0.025624909 0.016918003 8.54E-09 8.068314185 -0.252220764 T(ph)KSVSSMSEFESLLDCSPYLAGGDAR ddPTM_HeLa_CUDC101_4h_R1 1 TKSVSSMSEFESLLDCSPYLAGGDAR 26 1 O94964-2;H0YDM2;O94964;O94964-3;X6R3R3;O94964-4 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 T(0.344)KS(0.344)VS(0.201)S(0.08)MS(0.032)EFESLLDCSPYLAGGDAR 94.891 6.44E-06 20038000 1815.5 1915.6 1938.3 1866.3 2229.9 1828.8 1858.3 1747.9 2343 1097.7 TRUE FALSE FALSE 1602.689842 1974.617365 2043.090361 1942.415781 2065.40472 1793.918687 1929.975253 1946.873871 2246.420548 1091.170832 1.468779952 1.809631735 1.872383592 1.780120697 1.892833514 1.644031012 1.768719615 1.784206299 2.058724888 1 10.09166127 -8.066071721 0.693205152 1.047526044 1.806533669 0 0.3280101 0.129109613 0.137785099 0.041030139 0.027057354 8.59E-09 8.066071721 0.759007625 GEDLTEEEDGGIIRR ddPTM_HeLa_CUDC101_4h_R1 2 GEDLTEEEDGGIIRR 15 1 Q02790 Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" 0 0 ; ; 164.13 3.53E-05 13373700 4193.7 3294.1 2940.2 2707.1 2759.2 3018.4 2615.2 2619.3 3546.9 3452.3 FALSE FALSE TRUE 3702.120843 3395.587317 3099.156106 2817.507239 2555.659313 2960.829049 2716.06914 2917.470524 3400.695281 3431.765566 1.078780229 0.989457832 0.903079201 0.821008074 0.744706847 0.862771361 0.7914495 0.850136896 0.990946268 1 11.74473529 -6.632912775 2.069036875 1.037028562 0.811649564 0.856907709 0.038604932 0.078366691 0.682881764 0.006809061 0.010220326 2.33E-07 6.632912775 -0.225378998 LQQTVPADAS(ph)PDSKCPICLDR ddPTM_HeLa_CUDC101_4h_R1 2 LQQTVPADASPDSKCPICLDR 21 1 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 LQQT(0.001)VPADAS(0.984)PDS(0.015)KCPICLDR;LQQT(0.003)VPADAS(0.997)PDSKCPICLDR ; 89.71 0.00040852 40253000 5298.4 5601.1 5410.1 5836.8 6369.3 5644.6 5119.3 3785.5 5324.6 3414.8 TRUE FALSE FALSE 4677.329584 5773.663252 5702.586371 6074.849933 5899.449428 5536.93866 5316.753116 4216.426018 5105.117734 3394.488618 1.377918771 1.70089339 1.679954483 1.789621536 1.737949392 1.631155465 1.566289864 1.2421388 1.5039431 1 11.72897853 -8.063839474 0.850667665 1.059567497 1.632142266 0.236665463 0.206931156 0.215656175 0.336491964 0.052686512 0.038036867 8.63E-09 8.063839474 0.572574769 RGEGDAPFSEPGTTS(ph)TQRPS(ph)SPETATK ddPTM_HeLa_CUDC101_4h_R1 1 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 RGEGDAPFS(0.019)EPGT(0.051)T(0.114)S(0.399)T(0.322)QRPS(0.5)S(0.5)PET(0.091)AT(0.004)K 67.532 0.0033052 37238000 4077.3 3369.4 3156.3 3283.1 3103.8 3612.9 3140.3 3457.8 3340.7 3989 TRUE FALSE FALSE 3599.365075 3473.20722 3326.939125 3416.999009 2874.838858 3543.989952 3261.422423 3851.421975 3202.994932 3965.273251 0.907721826 0.875906148 0.839018881 0.861731032 0.725003972 0.893756805 0.822496261 0.971287912 0.807761466 1 11.95320457 -8.062544495 0.667629427 0.990740696 0.846855256 0 0.081827229 0.386803223 0.385351885 0.023225438 0.015095905 8.66E-09 8.062544495 -0.14388544 GEEDWLYER ddPTM_HeLa_CUDC101_4h_R1 2 GEEDWLYER 9 0 J3QQZ9;Q9NVS9-4;Q9NVS9-3;Q9NVS9 J3QQZ9 PNPO Pyridoxine-5-phosphate oxidase 0 0 ; ; 181.55 5.19E-10 36928000 7888.7 6608.6 6768.8 6668.4 6388.4 7243.7 6074 6018.4 6411.9 7817.2 FALSE FALSE TRUE 6963.998544 6812.203133 7134.741803 6940.366175 5917.140459 7105.538491 6308.276215 6703.510329 6147.598768 7770.702947 0.896186432 0.87665211 0.918159123 0.893145218 0.761467849 0.914400993 0.811802517 0.862664597 0.79112518 1 12.9238294 -9.701470669 0.198607446 1.123811437 0.819025477 0 0.078184884 4.818607014 0.244886726 0.383224855 0.064393709 1.99E-10 9.701470669 -0.30478596 DLVDEDLSHFQSGS(ph)PPAPNGFK ddPTM_HeLa_CUDC101_4h_R1 1 DLVDEDLSHFQSGSPPAPNGFK 22 0 Q70EK8 Q70EK8 USP53 Inactive ubiquitin carboxyl-terminal hydrolase 53 1 0 DLVDEDLSHFQS(0.048)GS(0.952)PPAPNGFK 103.92 2.47E-05 0 642.1 583.48 636.42 584.16 739.13 633.14 469.28 496.81 567.2 509.25 TRUE FALSE FALSE 566.8340114 601.4563272 670.8267903 607.9845698 684.6058525 621.0639094 487.3802868 553.3648422 543.8197759 506.2209584 1.119736356 1.188130039 1.325165976 1.201026073 1.352385438 1.226863288 0.962781724 1.093129064 1.07427353 1 8.983623428 -8.060821476 0.987648342 1.023092941 1.193770127 0.240842012 0.106303461 0.439256967 0.907936792 0.032817356 0.025055889 8.69E-09 8.060821476 0.170677186 GEEHCGHLIEAHK ddPTM_HeLa_CUDC101_4h_R1 1 GEEHCGHLIEAHK 13 0 H7C4E5;C9J8T6;Q14061 H7C4E5 COX17 Cytochrome c oxidase copper chaperone 0 0 63.76 0.021184 6537500 3080.3 2697.1 2709.2 3054.9 2675.5 2383.1 2198.4 1755.5 2918.8 679.43 FALSE FALSE TRUE 2719.231903 2780.194454 2855.667547 3179.492026 2478.133695 2337.646338 2283.193024 1955.339024 2798.485829 675.3887201 4.026173109 4.116436019 4.228183654 4.70764751 3.669196155 3.461186526 3.380561381 2.895131301 4.143518755 1 9.399574274 -9.162787256 0.830880415 0.930415597 3.839515202 0 1.072097279 0.223360945 0.26852483 0.411294124 0.107681855 6.87E-10 9.162787256 2.909099605 GEELSCEER ddPTM_HeLa_CUDC101_4h_R1 2 GEELSCEER 9 0 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 0 ; ; 145.16 0.0067939 32667000 4623 3168.5 3124.2 3541.2 3036.2 3332.7 2873.7 2760.2 3448.2 3454.7 FALSE FALSE TRUE 4081.098948 3266.117729 3293.103702 3685.625442 2812.225575 3269.1343 2984.539572 3074.410011 3306.063737 3434.151291 1.188386475 0.951069843 0.958927963 1.073227453 0.818899733 0.951948247 0.869076322 0.895245943 0.962701831 1 11.74573788 -6.30866408 1.005170871 1.083139582 0.890268306 0.241328689 0.086498893 0.365382297 0.731767868 0.016908336 0.0347633 4.91E-07 6.30866408 -0.192871275 GEENLMDAQVK ddPTM_HeLa_CUDC101_4h_R1 1 GEENLMDAQVK 11 0 P50990-3;P50990-2;P50990;H7C4C8 P50990-3 CCT8 T-complex protein 1 subunit theta 0 0 136.52 0.0077986 13002000 1105.1 1399.4 981.06 1048.6 1431.8 1280 1310.4 929.02 1282.6 1393.2 FALSE FALSE TRUE 975.5618532 1442.513855 1034.099071 1091.36644 1326.178967 1255.586133 1360.942567 1034.775882 1229.730685 1384.913184 0.704420944 1.041591539 0.746688733 0.788039606 0.957589964 0.906617214 0.98269161 0.747177436 0.88794785 1 10.43557983 -4.206963577 21.20371131 0.873162652 0.747172552 0.119140728 0.107997098 16128.1423 6276279 0.017716431 19.46390183 6.21E-05 4.206963577 -0.1259901 HT(ph)SVIQS(ph)T(ph)GLVS(ph)NVK ddPTM_HeLa_CUDC101_4h_R1 1 HTSVIQSTGLVSNVK 15 0 Q9UIF8-4;Q9UIF8-2;Q9UIF8-5;Q9UIF8-3;Q9UIF8;A0A0A0MR97 Q9UIF8-4 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B 4 0 HT(0.592)S(0.592)VIQS(0.989)T(0.841)GLVS(0.986)NVK 64.73 0.038862 20133000 2412.3 3581 1485.9 1388.2 2133.8 2888.2 2995.3 3166.2 1285.4 748.34 TRUE FALSE FALSE 2129.533851 3691.326365 1566.232249 1444.816796 1976.393825 2833.112397 3110.829724 3526.62741 1232.415268 743.8888404 2.862704392 4.962201562 2.105465445 1.942248247 2.656840267 3.808515793 4.18184755 4.740798918 1.656719662 1 9.538943245 -8.058088347 0.179360527 3.85E-39 4.73929878 0.469358975 0.943911753 3.16483555 0.375466039 5.4091409 3.352859372 8.75E-09 8.058088347 4.73929878 ATSSSNPSS(ph)PAPDWYK ddPTM_HeLa_CUDC101_4h_R1 1 ATSSSNPSSPAPDWYK 16 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 ATSSSNPS(0.169)S(0.831)PAPDWYK 113.67 0.0012155 10953000 3259.4 2621.6 2213.5 2413.4 2612.1 2609.1 2715.3 2155.1 2703.1 3420.7 TRUE FALSE FALSE 2877.338073 2702.368389 2333.168505 2511.828884 2419.410587 2559.335765 2820.030031 2400.427873 2591.677074 3400.353524 0.846187919 0.794731598 0.686154686 0.738696393 0.711517367 0.752667552 0.829334365 0.705934796 0.762178713 1 11.73146903 -8.057661494 0.641012834 0.987061328 0.738645105 0.152181479 0.080854861 0.187819032 0.173762057 0.019401622 0.012427139 8.76E-09 8.057661494 -0.248416223 AGMTSS(ph)PDATTGQTFG ddPTM_HeLa_CUDC101_4h_R1 2 AGMTSSPDATTGQTFG 16 0 Q9UQR1;G5E9X2;Q9UQR1-2 Q9UQR1 ZNF148 Zinc finger protein 148 1 0 AGMT(0.02)S(0.16)S(0.82)PDATTGQTFG;AGMT(0.01)S(0.072)S(0.917)PDATTGQTFG ; 181.98 3.90E-11 19077000 3688.2 2805.8 3236.1 2588.7 2879.3 3118.9 2817.2 2586.6 3260.7 3772.1 TRUE FALSE FALSE 3255.874787 2892.243372 3411.053355 2694.278375 2666.899775 3059.412179 2925.860348 2881.048089 3126.292566 3749.663381 0.86831122 0.771334138 0.909695887 0.718538733 0.711237118 0.815916488 0.78029947 0.768348461 0.833752859 1 11.87254537 -8.057457692 0.430710287 1.011061306 0.758715116 0.294990048 0.07108327 0.379485846 0.17221483 0.039343683 0.021737693 8.76E-09 8.057457692 -0.25234619 VIIS(ph)APSADAPMFVMGVNHEK ddPTM_HeLa_CUDC101_4h_R1 1 VIISAPSADAPMFVMGVNHEK 21 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VIIS(0.54)APS(0.46)ADAPMFVMGVNHEK 75.524 0.0019652 11362000 1138.6 780.44 769.72 870.53 836.62 943.83 868.5 674.36 927.77 1233.9 TRUE FALSE FALSE 1005.135034 804.4844314 811.3333915 906.0339762 774.9042094 925.8280153 901.9983359 751.1264165 889.5269279 1226.560708 0.819474346 0.655886355 0.661470228 0.738678461 0.63176996 0.7548163 0.735388253 0.612384215 0.725220466 1 10.26040293 -8.053588391 0.700214182 0.981469102 0.682829532 0.211566094 0.095302414 0.169972391 0.18493623 0.021161664 0.014159406 8.84E-09 8.053588391 -0.298639569 RGLLYDS(ph)DEEDEERPAR ddPTM_HeLa_CUDC101_4h_R1 2 RGLLYDSDEEDEERPAR 17 2 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR ; 115.74 0.00046182 391290000 2694.4 2701.3 2144.31 2504.3 2966.4 2566.8 2333.6 2391.19 2951.6 2158.79 TRUE FALSE FALSE 2378.566516 2784.523851 2260.237885 2606.436179 2747.574582 2517.842567 2423.607734 2663.393404 2829.933799 2145.949421 1.108398219 1.297571986 1.053257762 1.214584162 1.28035384 1.173300052 1.129387165 1.241125899 1.318732758 1 11.06740036 -8.052915053 0.669474253 1.008681723 1.199216588 0 0.119701363 0.350881158 0.351601841 0.027798405 0.018234422 8.85E-09 8.052915053 0.190534865 ASEDS(ph)EEEPSGK ddPTM_HeLa_CUDC101_4h_R1 2 ASEDSEEEPSGK 12 0 Q8IY33-4;Q8IY33-2;Q8IY33 Q8IY33-4 MICALL2 MICAL-like protein 2 1 0 AS(0.001)EDS(0.999)EEEPSGK;ASEDS(1)EEEPSGK ; 147.73 0.00080644 13185300 3941.7 2818.7 3216.8 3330 3445 2928.1 3283 2337.3 3621.1 3874 TRUE FALSE FALSE 3479.659901 2905.540806 3390.709938 3465.811793 3190.869213 2872.251371 3409.62641 2603.368784 3471.836725 3850.957276 0.903583097 0.754498323 0.880484954 0.89998708 0.828591175 0.745853866 0.885397101 0.676031594 0.901551608 1 11.9110014 -8.052777831 0.034944913 1.823578551 1.07E-09 0.396768071 0.070904698 56.83811374 1.124918438 30.79426139 27.61381022 8.86E-09 8.052777831 -1.82357855 MITNSLNHDS(ph)PPSTPPR ddPTM_HeLa_CUDC101_4h_R1 1 MITNSLNHDSPPSTPPR 17 0 J3QKZ5;J3QS16;Q8N9M1-2;Q8N9M1;Q8N9M1-3 J3QKZ5 C19orf47 Uncharacterized protein C19orf47 1 0 MIT(0.001)NSLNHDS(0.96)PPS(0.019)T(0.019)PPR 57.248 0.037348 7493700 1596.1 967.9 1259.5 1301 1485.1 1337.4 1289.6 1460 1265.8 1547.1 TRUE FALSE FALSE 1409.007578 997.7198518 1327.59238 1354.060403 1375.547132 1311.891323 1339.340304 1626.200498 1213.623188 1537.89778 0.916190657 0.648755635 0.863251379 0.880461901 0.894433394 0.853041951 0.870890329 1.057417807 0.789144249 1 10.5867439 -8.049900098 1.673430839 0.977476634 0.866517148 0 0.111000781 0.373369859 2.128689793 0.021404247 0.018402579 8.91E-09 8.049900098 -0.110959487 EGS(ph)FESR ddPTM_HeLa_CUDC101_4h_R1 1 EGSFESR 7 0 P19174-2;P19174;V9GY71;V9GYH5 P19174-2 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" 1 0 EGS(0.997)FES(0.003)R 89.029 0.034536 30044000 3040.1 1576.7 2314.7 2517.8 2307 2238.9 2895 2267.8 2479.6 3157.7 TRUE FALSE FALSE 2683.744086 1625.276258 2439.839684 2620.486767 2136.817206 2196.196713 3006.66112 2525.957185 2377.389838 3138.91786 0.854990225 0.517782348 0.777286884 0.834837636 0.680749641 0.699666831 0.957865498 0.804722295 0.757391542 1 11.61605156 -8.049364179 1.364232877 0.964835097 0.761433064 0.039557788 0.129322445 0.287180392 1.102379937 0.027951868 0.023283651 8.93E-09 8.049364179 -0.203402033 EHS(ph)PSESEKEVVGADPR ddPTM_HeLa_CUDC101_4h_R1 1 EHSPSESEKEVVGADPR 17 1 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 EHS(0.514)PS(0.48)ES(0.006)EKEVVGADPR 56.819 0.033371 38496000 4676.8 3740.1 3605.3 3482.1 4561.4 4431.3 3519 3746.3 4976.5 4419.3 TRUE FALSE FALSE 4128.592594 3855.328048 3800.213423 3624.115089 4224.91461 4346.780336 3654.729009 4172.763649 4771.366564 4393.013807 0.9398087 0.877604355 0.865058384 0.824972388 0.961734881 0.989475683 0.831941161 0.949863541 1.086126011 1 12.10099532 -8.048663562 1.050955869 0.987764172 0.900417112 0.39981895 0.060926644 0.37868743 0.881253365 0.014625983 0.011463574 8.94E-09 8.048663562 -0.08734706 ETNLDSLPLVDTHS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ETNLDSLPLVDTHSK 15 0 P08670 P08670 VIM Vimentin 1 0 ETNLDSLPLVDT(0.03)HS(0.97)K 140.35 0.00027903 6029100 2475.2 1535.4 1669.5 1923.2 2280.2 1695.3 1476.6 1764 1968.7 2689.9 TRUE FALSE FALSE 2185.060808 1582.703854 1759.75822 2001.636409 2111.994189 1662.964977 1533.552957 1964.80663 1887.549353 2673.900355 0.817181091 0.591908315 0.658124083 0.748583022 0.789855233 0.621924813 0.573526591 0.734809218 0.705916116 1 11.38472999 -8.048265764 0.714414924 0.981111688 0.669750215 0.121683945 0.112888195 0.228722507 0.258301985 0.0296642 0.020112208 8.95E-09 8.048265764 -0.311361473 NGVAAEVS(ph)PAKEENPR ddPTM_HeLa_CUDC101_4h_R1 2 NGVAAEVSPAKEENPR 16 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 NGVAAEVS(1)PAKEENPR;NGVAAEVS(1)PAKEENPR ; 91.889 0.0043064 278810000 5150.6 4414.7 4079 4234.6 4188.3 4186.6 3562.1 4380.6 4396.5 5176.7 TRUE FALSE FALSE 4546.854476 4550.711674 4299.523078 4407.305292 3879.337453 4106.74758 3699.49139 4879.269797 4215.274409 5145.908758 0.883586299 0.884335865 0.835522603 0.856467827 0.753868293 0.798060707 0.718918963 0.948184281 0.819150632 1 12.32921016 -8.047055881 0.390141683 1.012394453 0.795798337 0.006543029 0.080216786 0.583456024 0.224075614 0.051499379 0.02825903 8.97E-09 8.047055881 -0.216596116 GEGPDVDVNLPK ddPTM_HeLa_CUDC101_4h_R1 1 GEGPDVDVNLPK 12 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 109.6 0.032421 5545700 1480.8 1506.7 1479.2 1235.7 1545.9 1497.8 1378.6 1486.6 1363.2 1571.5 FALSE FALSE TRUE 1307.222869 1553.119641 1559.170026 1286.097187 1431.862037 1469.231961 1431.773064 1655.828535 1307.008319 1562.152648 0.836808663 0.99421759 0.998090698 0.82328522 0.916595468 0.940517537 0.916538512 1.059965898 0.836671321 1 10.60931972 -4.25911524 23.60264126 0.925049957 1.059966004 0.295897487 0.064863828 109.7842872 1114734.218 0.00980631 0.087355458 5.51E-05 4.25911524 0.134916047 SQSS(ph)DTEQQS(ph)PTSGGGK ddPTM_HeLa_CUDC101_4h_R1 4 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 S(0.012)QS(0.187)S(0.805)DT(0.345)EQQS(0.623)PT(0.023)S(0.006)GGGK;S(0.001)QS(0.053)S(0.743)DT(0.182)EQQS(0.731)PT(0.256)S(0.034)GGGK;S(0.005)QS(0.207)S(0.656)DT(0.132)EQQS(0.687)PT(0.258)S(0.055)GGGK;S(0.005)QS(0.091)S(0.902)DT(0.003)EQQS(0.81)PT(0.172)S(0.017)GGGK ;;; 166.21 7.39E-05 539209000 10680.5 8041.6 9497.6 8271.9 9472.9 8661 9313.8 8590.6 9467.4 9968.5 TRUE FALSE FALSE 9428.547981 8289.352164 10011.06898 8609.263836 8774.10304 8495.805855 9673.036386 9568.51918 9077.149765 9909.206919 0.951493703 0.836530333 1.010279538 0.868814619 0.885449573 0.857364865 0.976166556 0.965619071 0.916031912 1 13.27455388 -8.046821149 1.024628956 0.990724248 0.91493153 0.014389148 0.058766155 0.441063103 0.978126893 0.014681561 0.011433324 8.98E-09 8.046821149 -0.075792718 GEHGFIGCR ddPTM_HeLa_CUDC101_4h_R1 4 GEHGFIGCR 9 0 Q16658;C9JPH9;C9JFC0;A0A0A0MSB2 Q16658 FSCN1 Fascin 0 0 ;;; ;;; 125.16 0.0041195 94705500 6593.3 5029.34 4097.59 5770.1 4757.73 4609.08 4854.37 5109.72 4439.59 1669.85 FALSE FALSE TRUE 5820.443369 5184.288004 4319.11811 6005.429619 4406.761737 4521.169478 5041.604677 5691.389871 4256.588221 1659.917658 3.50646512 3.123219986 2.602007449 3.617908147 2.654807433 2.723731178 3.03726191 3.428718192 2.564336972 1 10.69689596 -9.326286601 0.928255072 0.932767529 3.089431849 0.339138502 0.579358627 0.186429 0.273337191 0.282413947 0.066059034 4.72E-10 9.326286601 2.15666432 AGSIST(ph)LDSLDFAR ddPTM_HeLa_CUDC101_4h_R1 1 AGSISTLDSLDFAR 14 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 AGS(0.061)IS(0.211)T(0.727)LDSLDFAR 222.56 4.88E-32 18670000 1210.7 1119.3 1161.3 954.55 1412.1 1187.5 1253.2 1041.4 979.96 906.36 TRUE FALSE FALSE 1068.783581 1153.784306 1224.083391 993.4806749 1307.932196 1164.850416 1301.536344 1159.948767 939.565634 900.9689304 1.186260197 1.280603878 1.35862997 1.102680283 1.451695116 1.292886332 1.444596256 1.287445912 1.042839106 1 9.815333546 -8.046661786 0.302427764 0.936816524 1.390924865 0.630900086 0.091218326 0.724255759 0.183078534 0.130386684 0.071588956 8.98E-09 8.046661786 0.454108341 NTGIICTIGPAS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 NTGIICTIGPASR 13 0 P14618;B4DNK4;P14618-2;H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;H3BU13 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 1 0 NTGIICTIGPAS(1)R;NTGIICTIGPAS(1)R ; 164.7 2.70E-05 103682000 2537.6 2657.1 2340.1 2642.3 2769.6 2495.1 2321.4 2567.3 2755 1775.26 TRUE FALSE FALSE 2240.146375 2738.962102 2466.612884 2750.064415 2565.292126 2447.510125 2410.937176 2859.551055 2641.437734 1764.700675 1.269420025 1.552083105 1.397751426 1.558374434 1.453669828 1.386926497 1.366201765 1.620417046 1.496819133 1 10.78520778 -8.044758447 0.706942043 1.028565511 1.476884211 0 0.170714963 0.184096418 0.203963028 0.034307717 0.023215393 9.02E-09 8.044758447 0.4483187 DDAT(ph)PVRDEPMDAESITFK ddPTM_HeLa_CUDC101_4h_R1 4 DDATPVRDEPMDAESITFK 19 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 DDAT(1)PVRDEPMDAESITFK;DDAT(1)PVRDEPMDAESITFK;DDAT(1)PVRDEPMDAESITFK;DDAT(1)PVRDEPMDAESITFK ;;; 97.352 0.0022893 86761000 16485.1 12484.5 11927.2 12515.5 12761 13941 13698 11882.9 13399.3 16790.2 TRUE FALSE FALSE 14552.74157 12869.13265 12572.02051 13025.93619 11819.64645 13675.09865 14226.33645 13235.6013 12846.97518 16690.33114 0.871926473 0.771053165 0.753251712 0.780448038 0.708173274 0.81934256 0.852369934 0.793010108 0.769725602 1 14.02672496 -8.044269856 0.797527246 0.981533874 0.781511267 0 0.077903933 0.183398762 0.253911785 0.015406028 0.010984723 9.03E-09 8.044269856 -0.200022607 TIAS(ph)DSEEEAGKELSDK ddPTM_HeLa_CUDC101_4h_R1 1 TIASDSEEEAGKELSDK 17 1 Q96ST2-3;Q96ST2;Q96ST2-2 Q96ST2-3 IWS1 Protein IWS1 homolog 1 0 T(0.203)IAS(0.787)DS(0.01)EEEAGKELSDK 84.436 0.0055185 8695900 2149.1 2131.9 1719.7 1623.9 1923.6 1397.7 1537.1 1061.1 2468.5 2615.8 TRUE FALSE FALSE 1897.185756 2197.581312 1812.672184 1690.129661 1781.69986 1371.041201 1596.386462 1181.891335 2366.747385 2600.241105 0.72961917 0.845145209 0.697116964 0.649989594 0.685205636 0.527274643 0.613937861 0.45453144 0.91020305 1 11.34442969 -8.043925704 0.078293344 1.612871101 4.05E-13 0.859552293 0.059853866 5.309217932 0.243835112 2.734738777 2.163040751 9.04E-09 8.043925704 -1.612871101 KSEDGTPAEDGT(ph)PAATGGSQPPSMGR ddPTM_HeLa_CUDC101_4h_R1 1 KSEDGTPAEDGTPAATGGSQPPSMGR 26 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 KS(0.002)EDGT(0.001)PAEDGT(0.995)PAAT(0.001)GGSQPPSMGR 84.299 3.54E-05 0 869.35 515.49 633.55 797.76 746.7 876.18 711.65 540.79 808.04 860.25 TRUE FALSE FALSE 767.4461108 531.3716359 667.8016294 830.296101 691.6174286 859.4683263 739.0985789 602.3513477 774.7322492 855.1331947 0.897457981 0.621390491 0.780932881 0.970955292 0.808783278 1.00506954 0.864308138 0.704394767 0.905978453 1 9.74000534 -8.043696887 1.555673432 0.973229801 0.834382483 0.158892365 0.110948034 0.371952429 1.841652673 0.025890704 0.022095817 9.04E-09 8.043696887 -0.138847318 SQQQPT(ph)PVTPK ddPTM_HeLa_CUDC101_4h_R1 3 SQQQPTPVTPK 11 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 S(0.001)QQQPT(0.979)PVT(0.02)PK;S(0.001)QQQPT(0.99)PVT(0.01)PK;S(0.139)QQQPT(0.86)PVTPK ;; 184.96 4.98E-10 404224000 17958.7 15023.2 15021.4 14337.8 15773.9 14610.4 13493.9 15028.9 17423 17382.9 TRUE FALSE FALSE 15853.60841 15486.04699 15833.50232 14922.55746 14610.29082 14331.73096 14014.36424 16739.72923 16704.81657 17279.50574 0.917480433 0.896208909 0.916316853 0.863598629 0.845527126 0.829406302 0.811039648 0.96876204 0.966741573 1 14.07677433 -8.042878612 0.414282813 1.006485556 0.855121931 0.507466087 0.042652271 0.544059365 0.231912962 0.033668889 0.018722659 9.06E-09 8.042878612 -0.151363625 RSTAPSAAASASASAAASS(ph)PAGGGAEALELLEHCGVCR ddPTM_HeLa_CUDC101_4h_R1 1 RSTAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 38 1 Q13263-2;Q13263 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 1 0 RSTAPSAAASASAS(0.001)AAAS(0.33)S(0.669)PAGGGAEALELLEHCGVCR 73.077 5.11E-07 16427000 1221.9 1320.1 1442.1 1290.2 1772.9 1527.5 1572.6 1528.8 1399 443.9 TRUE FALSE FALSE 1078.670734 1360.770716 1520.064288 1342.819933 1642.116699 1498.365482 1633.255709 1702.832412 1341.332628 441.2596631 2.444526034 3.083832107 3.444829463 3.043151335 3.721429436 3.395654776 3.701348311 3.859025773 3.039780746 1 8.785484062 -8.042716823 0.351859075 0.685220331 3.86883553 0.329889756 0.653340341 0.168896297 0.054639199 0.217074966 0.118750584 9.06E-09 8.042716823 3.183615199 NQGGGLSS(ph)SGAGEGQGPK ddPTM_HeLa_CUDC101_4h_R1 2 NQGGGLSSSGAGEGQGPK 18 0 P07814 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 0 NQGGGLS(0.046)S(0.477)S(0.477)GAGEGQGPK;NQGGGLS(0.062)S(0.538)S(0.4)GAGEGQGPK ; 223.15 4.64E-33 14774600 7379.1 5794 5329.4 6043.7 6438.1 6090.9 6092.5 6639.2 6404.4 7046.3 TRUE FALSE FALSE 6514.133084 5972.506272 5617.523485 6290.188209 5963.17419 5974.726231 6327.489766 7394.979691 6140.407921 7004.388294 0.93000742 0.852680637 0.802000581 0.898035338 0.851348318 0.852997575 0.903360793 1.055763813 0.876651559 1 12.77404335 -8.042685544 1.142607097 0.984675863 0.884916398 0 0.072786962 0.379578681 1.036601987 0.017087618 0.013743657 9.06E-09 8.042685544 -0.099759465 LSPPVASGGIPHQS(ph)PPTK ddPTM_HeLa_CUDC101_4h_R1 2 LSPPVASGGIPHQSPPTK 18 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 LSPPVASGGIPHQS(0.814)PPT(0.186)K;LSPPVASGGIPHQS(0.738)PPT(0.262)K ; 69.255 0.012683 43461000 5496.4 4067.3 4072.3 3969.4 5600.9 4827.1 4161.4 3962.5 5853.4 5410.3 TRUE FALSE FALSE 4852.120324 4192.608692 4292.460856 4131.289289 5187.732766 4735.03111 4321.906592 4413.574983 5612.120374 5378.119295 0.902196485 0.779567812 0.798134184 0.768166168 0.964599794 0.88042508 0.803609283 0.820653976 1.043509834 1 12.39288604 -8.042495189 1.02452282 0.980702783 0.834752199 0.58463926 0.060212002 0.264107028 0.585692514 0.016902512 0.013195631 9.07E-09 8.042495189 -0.145950584 GEMMDLQHGSLFLR ddPTM_HeLa_CUDC101_4h_R1 2 GEMMDLQHGSLFLR 14 0 P00338-3;P00338;P00338-4;P00338-2;P00338-5;F5GYU2;F5GXY2;F5GXH2;F5H6W8;F5H5J4 P00338-3 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 119.17 0.0013992 21452600 8619.2 6317.5 5775.8 5776.6 6776.3 6728.5 6271.4 5203.6 7289.1 6357.8 FALSE FALSE TRUE 7608.870442 6512.134687 6088.057219 6012.194717 6276.425849 6600.165073 6513.289999 5795.95679 6988.640213 6319.983523 1.203938335 1.030403744 0.963302704 0.951299113 0.993107945 1.044332639 1.030586547 0.917084162 1.105800385 1 12.62570508 -7.00860177 23.10280805 1.097402471 0.98800714 0.464906134 0.05736471 148.1815875 397992.2968 0.013396214 0.017116592 9.80E-08 7.00860177 -0.109395331 SQEEPKDTFEHDPSES(ph)IDEFNK ddPTM_HeLa_CUDC101_4h_R1 2 SQEEPKDTFEHDPSESIDEFNK 22 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SQEEPKDTFEHDPS(0.071)ES(0.929)IDEFNK;SQEEPKDTFEHDPS(0.365)ES(0.635)IDEFNK ; 133.95 1.83E-07 60600000 8044.7 6660.1 5501.5 5610.2 7008.3 6983.1 8339.9 5621.6 6119.2 7792.6 TRUE FALSE FALSE 7101.712461 6865.289787 5798.927731 5839.008205 6491.311672 6849.909002 8661.572737 6261.540221 5866.963986 7746.249269 0.916793691 0.886272769 0.748611041 0.75378522 0.837994163 0.88428719 1.118163441 0.808331878 0.757394164 1 12.91928221 -8.041367207 1.053274759 0.982583128 0.866500138 0 0.121219288 0.555758035 1.2991996 0.028469526 0.022420923 9.09E-09 8.041367207 -0.11608299 ASAGTPSLSAGVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 ASAGTPSLSAGVSPK 15 0 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 0 ASAGTPSLSAGVS(1)PK;ASAGTPSLSAGVS(1)PK ; 116.87 0.0012458 107851000 8372 7090.2 6352.4 6592.9 7013.5 7344.9 5724 7387.1 9046.1 8237.3 TRUE FALSE FALSE 7390.646851 7308.640658 6695.829959 6861.786959 6496.128078 7204.80827 5944.776597 8228.017604 8673.215929 8188.304173 0.902585773 0.892570733 0.817730975 0.837998542 0.793342301 0.87989016 0.726008276 1.004850019 1.059220047 1 12.99934898 -8.040614245 0.587182384 0.993687616 0.836144383 0.470857727 0.072134403 0.454137685 0.35893285 0.029494992 0.018435262 9.11E-09 8.040614245 -0.157543233 QSS(ph)PSGSEQLVR ddPTM_HeLa_CUDC101_4h_R1 2 QSSPSGSEQLVR 12 0 H0Y704;O15231-2;O15231-3;H7BZT5;O15231-9;O15231-5;O15231-4;O15231-7;O15231;O15231-8;O15231-6 H0Y704 ZNF185 Zinc finger protein 185 1 0 QS(0.097)S(0.898)PS(0.004)GSEQLVR;QS(0.029)S(0.933)PS(0.03)GS(0.008)EQLVR ; 168 5.66E-06 118718000 7556.6 6431.4 6543.9 6225 6697.2 6320.1 6151.8 6247.2 6438 7069.7 TRUE FALSE FALSE 6670.826803 6629.543811 6897.683028 6478.882407 6203.160899 6199.554623 6389.076987 6958.355996 6172.622915 7027.64911 0.949225936 0.943351569 0.981506464 0.92191319 0.882679371 0.882166216 0.909134319 0.99013993 0.878333966 1 12.77882644 -8.038825374 0.37538059 1.005085278 0.914736823 0 0.04966756 0.939259443 0.339032966 0.034446386 0.018979788 9.14E-09 8.038825374 -0.090348455 NSSQSLMVPQSGS(ph)PEPESIR ddPTM_HeLa_CUDC101_4h_R1 3 NSSQSLMVPQSGSPEPESIR 20 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970;B7ZB24;H0YGQ3;A0A075B6R8 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 NSSQSLMVPQS(0.365)GS(0.635)PEPESIR;NSSQSLMVPQS(0.144)GS(0.856)PEPESIR;NSSQSLMVPQS(0.118)GS(0.876)PEPES(0.007)IR ;; 208.87 1.56E-24 44475000 6410.5 4979.3 4903.6 5427.9 5777.1 5359.9 4727.8 5059.8 6130.1 6164.5 TRUE FALSE FALSE 5659.070908 5132.706331 5168.703449 5649.273223 5350.934843 5257.668838 4910.15283 5635.78718 5877.414683 6127.83328 0.923502754 0.837605414 0.843479777 0.921903871 0.873218085 0.857998023 0.801286948 0.919703086 0.959134235 1 12.58116133 -8.03866039 0.705109019 0.992205019 0.861647795 0.568965851 0.038194174 0.25946617 0.286195732 0.014044889 0.009538539 9.15E-09 8.03866039 -0.130557223 AVEESS(ph)DEER ddPTM_HeLa_CUDC101_4h_R1 1 AVEESSDEER 10 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 AVEES(0.119)S(0.881)DEER 110.08 0.0083534 4963300 4095.4 2390.4 3646.2 3916.1 2650.6 2143.2 2497 899.05 4893.3 5507.5 TRUE FALSE FALSE 3615.34342 2464.045391 3843.324601 4075.815485 2455.070519 2102.322031 2593.310126 1001.394218 4691.596103 5474.741145 0.66036792 0.450075232 0.702010287 0.744476383 0.448435908 0.384003915 0.473686346 0.182911701 0.856953046 1 12.41857504 -8.038204694 0.123902619 1.468980226 1.54E-14 0.724007816 0.122309173 3.260978715 0.250076663 1.634037738 1.151548743 9.16E-09 8.038204694 -1.468980226 SSQLDSGVPS(ph)SPGGR ddPTM_HeLa_CUDC101_4h_R1 1 SSQLDSGVPSSPGGR 15 0 I3L4X5;Q70CQ4 I3L4X5 USP31 Ubiquitin carboxyl-terminal hydrolase 31 1 0 SSQLDS(0.006)GVPS(0.77)S(0.224)PGGR 117.07 0.0012088 7701200 4541.7 3704.1 3561.2 3903.9 3632.3 3521.4 3763.5 3447 3805.5 4455.1 TRUE FALSE FALSE 4009.328811 3818.218931 3753.729244 4063.117916 3364.352466 3454.235162 3908.659456 3839.392547 3648.635679 4428.600867 0.905326294 0.862172737 0.847610647 0.91747214 0.759687442 0.7799834 0.882594655 0.866953844 0.823879999 1 12.11263526 -8.034375157 0.468232022 1.003262497 0.829725602 0 0.068564514 0.419795429 0.221938035 0.029869921 0.017250927 9.24E-09 8.034375157 -0.173536895 LSVGSVT(ph)S(ph)RPSTPTLGTPTPQTMSVSTK ddPTM_HeLa_CUDC101_4h_R1 1 LSVGSVTSRPSTPTLGTPTPQTMSVSTK 28 1 Q16594;D6RIE8 Q16594 TAF9 Transcription initiation factor TFIID subunit 9 2 0 LS(0.007)VGS(0.162)VT(0.354)S(0.597)RPS(0.41)T(0.41)PT(0.042)LGT(0.016)PT(0.002)PQT(0.001)MSVSTK 60.218 0.0036891 20531000 1399.6 1159.4 898.97 1213.2 1294 1107.1 1104.5 1327.2 1392.1 1332.5 TRUE FALSE FALSE 1235.54101 1195.11974 947.5710374 1262.67954 1198.544198 1085.983912 1147.100935 1478.283083 1334.717049 1324.574231 0.932783517 0.902267092 0.715377829 0.95327201 0.90485242 0.819873954 0.866014836 1.11604397 1.007657418 1 10.37131298 -8.030535346 1.126420887 0.985150822 0.890983696 0.146904849 0.096477875 0.582276005 1.548317689 0.024542792 0.019797697 9.32E-09 8.030535346 -0.094167127 AHQGTGAGIS(ph)PVILNSGEGK ddPTM_HeLa_CUDC101_4h_R1 2 AHQGTGAGISPVILNSGEGK 20 0 F5GZK9;Q8IZD4-2;Q8IZD4 F5GZK9 DCP1B mRNA-decapping enzyme 1B 1 0 AHQGTGAGIS(1)PVILNSGEGK;AHQGTGAGIS(1)PVILNSGEGK ; 114.64 5.25E-05 28956000 11368.2 8494.4 8702.2 8102.3 8795.2 8513.7 8145.6 7444.9 11189.1 12297.3 TRUE FALSE FALSE 10035.63683 8756.102396 9172.667255 8432.746815 8146.395619 8351.315357 8459.778521 8292.397323 10727.88056 12224.15511 0.820967726 0.716295099 0.750372289 0.689842917 0.666417887 0.683181396 0.692054252 0.678361592 0.877596894 1 13.57744713 -8.028632155 0.441880237 1.012881144 0.665640641 0.850627127 0.040155519 0.114081449 0.054602093 0.016194319 0.009259018 9.36E-09 8.028632155 -0.347240503 EKQS(ph)DDEVYAPGLDIESSLK ddPTM_HeLa_CUDC101_4h_R1 4 EKQSDDEVYAPGLDIESSLK 20 1 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 1 0 EKQS(1)DDEVYAPGLDIESSLK;EKQS(1)DDEVYAPGLDIESSLK;EKQS(0.987)DDEVY(0.013)APGLDIESSLK;EKQS(0.933)DDEVY(0.067)APGLDIESSLK ;;; 136.77 1.17E-05 118388500 19049.7 15874.1 15248.6 15597.3 16554.9 14304.1 15191.1 15415.5 17209.5 18631.6 TRUE FALSE FALSE 16816.72304 16363.16221 16072.98544 16233.42531 15333.67801 14031.27312 15777.02582 17170.33821 16500.11713 18520.77841 0.907992238 0.883502941 0.867835308 0.876498004 0.827917578 0.757596296 0.851855438 0.927085127 0.890897605 1 14.17685711 -8.024001743 0.453799523 1.00345446 0.837419201 0.26762672 0.051469398 0.433221839 0.217430957 0.029394077 0.016996977 9.46E-09 8.024001743 -0.166035259 GESEDDFWWCIDR ddPTM_HeLa_CUDC101_4h_R1 4 GESEDDFWWCIDR 13 0 O43865;H0Y8B3;O43865-2;Q96HN2-4;Q96HN2-3;Q96HN2-2;Q96HN2 O43865;Q96HN2-2 AHCYL1;AHCYL2 Putative adenosylhomocysteinase 2;Adenosylhomocysteinase;Putative adenosylhomocysteinase 3 0 0 ;;; ;;; 203.03 3.15E-16 77451100 7354.1 7711.72 7444.9 7148 7947.1 7776.4 6975.7 6234.73 8239.4 942.79 FALSE FALSE TRUE 6492.063546 7949.308953 7847.393814 7439.526336 7360.858266 7628.078126 7244.755086 6944.466462 7899.768445 937.1822432 6.927215697 8.482137824 8.373391484 7.938185332 7.854244273 8.139375433 7.730358891 7.409942423 8.429276699 1 9.872185809 -8.851613607 0.5994771 0.598020177 8.077970858 0 2.303771144 0.117694969 0.075746793 0.450827969 0.128405419 1.41E-09 8.851613607 7.479950681 EDS(ph)YHVRSRSS(ph)Y(ph)DDRS(ph)SDR ddPTM_HeLa_CUDC101_4h_R1 1 EDSYHVRSRSSYDDRSSDR 19 3 P49760;P49760-3;P49760-2 P49760;P49760-2 CLK2 Dual specificity protein kinase CLK2 4 0 EDS(0.422)Y(0.38)HVRS(0.205)RS(0.292)S(0.748)Y(0.91)DDRS(0.75)S(0.292)DR 40.844 0.0032662 0 2139.1 1903.8 1826.6 1977.9 2129.2 2014.3 1909.6 1582.2 2194.9 1802.2 TRUE FALSE FALSE 1888.357941 1962.453821 1925.351521 2058.567311 1972.133158 1975.880584 1983.253912 1762.311253 2104.425293 1791.480434 1.054076787 1.095436927 1.074726514 1.149087242 1.100839909 1.102931713 1.107047486 0.983717834 1.174685055 1 10.80693657 -8.018291948 0.806976729 1.0083086 1.092109181 0 0.066115085 0.371339101 0.525906122 0.012952488 0.009451825 9.59E-09 8.018291948 0.083800581 GESPVDYDGGR ddPTM_HeLa_CUDC101_4h_R1 2 GESPVDYDGGR 11 0 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 Q15084-3 PDIA6 Protein disulfide-isomerase A6 0 0 ; ; 130.41 0.011023 44964000 5746.8 4849 5007.3 5528.7 5449.6 5460.6 4710.2 4998.4 4807.6 5743.7 FALSE FALSE TRUE 5073.168816 4998.391943 5278.009784 5754.184283 5047.593865 5356.448153 4891.873992 5567.397652 4609.428693 5709.536217 0.888543066 0.875446228 0.924420055 1.007819911 0.884063727 0.938158188 0.85679008 0.975105059 0.807321036 1 12.47915785 -9.400987463 1.128245095 0.999979056 0.915593365 0 0.07413335 0.445630842 1.015114158 0.029359061 0.007485573 3.97E-10 9.400987463 -0.084385691 LDDGHLNNSLS(ph)SPVQADVYFPR ddPTM_HeLa_CUDC101_4h_R1 1 LDDGHLNNSLSSPVQADVYFPR 22 0 F8WF17;B9A055;U3KQ88;Q3ZCW2 F8WF17 LGALSL Galectin;Galectin-related protein 1 0 LDDGHLNNSLS(0.947)S(0.053)PVQADVYFPR 180.21 4.70E-22 0 582.55 401.82 404.77 299.98 571.85 397.45 447.77 342.81 520.23 649.14 TRUE FALSE FALSE 514.2643721 414.1995979 426.6530906 312.214481 529.6657648 389.8693034 465.0406389 381.8341047 498.7858992 645.2788864 0.796964511 0.641892377 0.661191772 0.483844253 0.820832319 0.604187293 0.720681629 0.591735004 0.77297725 1 9.333779011 -8.017235277 0.708036466 0.976810651 0.642061174 0.399484544 0.10720213 0.228857278 0.254627443 0.031499525 0.021793635 9.61E-09 8.017235277 -0.334749478 EKEEETKTSNGDLSDS(ph)TVSADPVVK ddPTM_HeLa_CUDC101_4h_R1 1 EKEEETKTSNGDLSDSTVSADPVVK 25 2 A0A087X256;Q2M389 A0A087X256 KIAA1033 WASH complex subunit 7 1 0 EKEEET(0.002)KT(0.049)S(0.049)NGDLS(0.059)DS(0.378)T(0.378)VS(0.086)ADPVVK 58.904 0.0052299 22091000 3961.2 3105.7 3140.1 3114.6 3270.2 3158.5 3132.3 3350.9 3158.7 3862 TRUE FALSE FALSE 3496.874141 3201.382936 3309.863304 3241.62685 3028.963861 3098.256875 3253.11386 3732.352911 3028.497049 3839.028652 0.910874718 0.833904413 0.862161657 0.844387251 0.788992252 0.807041873 0.847379417 0.97221283 0.788870655 1 11.90652561 -8.015754628 0.740261403 0.988539428 0.844323225 0 0.078717748 0.292776577 0.353499355 0.017405328 0.012285874 9.64E-09 8.015754628 -0.144216203 GETESEEFEK ddPTM_HeLa_CUDC101_4h_R1 1 GETESEEFEK 10 0 E9PGZ1;Q05682-5;Q05682-4;C9J813;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682 E9PGZ1;E7EX44;Q05682 CALD1 Caldesmon 0 0 125.71 0.019048 7636500 679.12 620.16 567.03 651.85 835.31 781.25 736.71 766.26 810.89 678.66 FALSE FALSE TRUE 599.5145831 639.2663945 597.685357 678.4352605 773.6908455 766.3489579 765.1251515 853.4879411 777.464771 674.6233001 0.888665694 0.947590151 0.885954216 1.005650502 1.146848686 1.135965742 1.134151683 1.265132617 1.152442809 1 9.397938337 -5.820518713 2.813141086 0.941733274 1.170710475 0.55768285 0.080945485 0.087795419 1.414556152 0.008268756 0.01657292 1.51E-06 5.820518713 0.228977201 QGDETPST(ph)NNGSDDEK ddPTM_HeLa_CUDC101_4h_R1 1 QGDETPSTNNGSDDEK 16 0 Q9Y3P9;Q9Y3P9-3;C9JGR5;B5MCD9;Q9Y3P9-4 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 QGDETPS(0.014)T(0.785)NNGS(0.202)DDEK 93.754 0.031866 6973700 1634.6 1244.1 1089.8 1146.3 1198 1019.4 1008.2 1021.9 1204 1925 TRUE FALSE FALSE 1442.994666 1282.429246 1148.717884 1193.051069 1109.625927 999.9566434 1047.086612 1138.228965 1154.37061 1913.550014 0.754092997 0.670183291 0.600307217 0.623475247 0.579878194 0.522566244 0.547195842 0.594825825 0.603261269 1 10.90203589 -8.015415201 0.389248813 1.033259867 0.531531896 0.121400761 0.123596128 0.128198212 0.049625351 0.026094531 0.014768117 9.65E-09 8.015415201 -0.501727971 S(ph)VSCDNVSK ddPTM_HeLa_CUDC101_4h_R1 1 SVSCDNVSK 9 0 Q96CB8;A0A087WXN4 Q96CB8 INTS12 Integrator complex subunit 12 1 0 S(0.966)VS(0.006)CDNVS(0.028)K 131.12 0.0030547 129030000 4365.7 2819.6 3986.8 3659.8 3363.3 2748.1 3440.7 4460.2 3512.9 4231.6 TRUE FALSE FALSE 3853.959264 2906.468534 4202.338467 3809.062463 3115.19606 2695.684571 3573.408952 4967.931139 3368.096775 4206.430255 0.916206624 0.690958451 0.999027254 0.905533251 0.740579511 0.640848512 0.849511043 1.181032571 0.800701918 1 12.03838071 -8.0150959 1.179282429 0.98149744 0.851746044 0 0.158740944 0.646600806 1.879144552 0.037867766 0.031134826 9.66E-09 8.0150959 -0.129751396 DGTAPPPQSPGS(ph)PGTGQDEEWS(ph)DEESPRK ddPTM_HeLa_CUDC101_4h_R1 1 DGTAPPPQSPGSPGTGQDEEWSDEESPRK 29 1 A0A0C4DGG1;Q9UKS6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 2 0 DGT(0.001)APPPQS(0.409)PGS(0.564)PGT(0.054)GQDEEWS(0.961)DEES(0.012)PRK 57.959 0.00070533 0 904.05 928.42 806.48 850.4 871.52 882.17 825.32 899.86 911.47 700.44 TRUE FALSE FALSE 798.0786295 957.0235198 850.0807483 885.0829877 807.2297059 865.344077 857.1528689 1002.296425 873.8988208 696.2737517 1.146213867 1.374493175 1.220900179 1.271170981 1.159356796 1.242821627 1.231057277 1.439514878 1.255108093 1 9.443510827 -8.014911766 0.785194526 1.019325125 1.270063754 0.08786554 0.109766789 0.261790785 0.352431456 0.027199703 0.019681392 9.66E-09 8.014911766 0.250738629 TPLDLFAHFGPEPGDHSDPLPPSAPS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 2 TPLDLFAHFGPEPGDHSDPLPPSAPSPTR 29 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 TPLDLFAHFGPEPGDHSDPLPPS(0.036)APS(0.728)PT(0.236)R;TPLDLFAHFGPEPGDHSDPLPPS(0.1)APS(0.648)PT(0.253)R ; 119.41 1.55E-13 53303000 2294.51 1838.34 1892.66 1921.97 1706.78 2112.62 1740.06 1594.01 2085.37 2248.94 TRUE FALSE FALSE 2025.551016 1894.977076 1994.982925 2000.356244 1580.87424 2072.325293 1807.174697 1775.465655 1999.410166 2235.563205 0.906058487 0.847650861 0.892384935 0.894788499 0.707148085 0.926981303 0.808375578 0.794191661 0.894365304 1 11.12642262 -8.014887181 0.258209608 1.044615244 0.7901811 0.293669738 0.06490544 1.161664328 0.234987745 0.114966868 0.066683341 9.66E-09 8.014887181 -0.254434144 IQQFDDGGS(ph)DEEDIWEEK ddPTM_HeLa_CUDC101_4h_R1 3 IQQFDDGGSDEEDIWEEK 18 0 H0YEN2;E9PQP7;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-2;Q5H9R7;Q5H9R7-5;Q5H9R7-3 H0YEN2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 IQQFDDGGS(1)DEEDIWEEK;IQQFDDGGS(1)DEEDIWEEK;IQQFDDGGS(1)DEEDIWEEK ;; 200.04 4.37E-17 79486000 20907 17833.6 15790.2 17278.2 19305.9 18723.1 17715.2 17962.1 20706 19024.3 TRUE FALSE FALSE 18456.31315 18383.03208 16643.86597 17982.87968 17881.74222 18365.98806 18398.4812 20006.83286 19852.48992 18911.14262 0.975949128 0.972074107 0.880108955 0.950914497 0.945566462 0.971172839 0.972891039 1.05793887 1.049777389 1 14.20694891 -8.013001995 1.239389284 0.994207552 0.961764957 0.155681356 0.04454868 0.698054344 2.232797627 0.010376066 0.008632624 9.71E-09 8.013001995 -0.032442595 GEVRPELGSR ddPTM_HeLa_CUDC101_4h_R1 1 GEVRPELGSR 10 1 P27708;F8VPD4 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 0 0 100.02 0.020197 3680600 875.19 680.03 830.51 881.44 864.09 735.01 693.82 611.2 670.28 801.86 FALSE FALSE TRUE 772.6015549 700.9809183 875.4098828 917.3889331 800.3478022 720.9909089 720.5808698 680.7765374 642.6507747 797.0905011 0.969277082 0.879424504 1.098256574 1.150921924 1.004086488 0.904528291 0.904013872 0.854076841 0.806245682 1 9.638599726 -5.195544424 4.321441638 0.999521473 0.885543096 0.186293773 0.093167536 0.212257195 7.876537558 0.010720864 0.028395736 6.37E-06 5.195544424 -0.113978377 ASET(ph)PPPVAQPKPEAPHPGLETTLQER ddPTM_HeLa_CUDC101_4h_R1 1 ASETPPPVAQPKPEAPHPGLETTLQER 27 1 Q6P1N0;Q6P1N0-2 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 AS(0.11)ET(0.89)PPPVAQPKPEAPHPGLETTLQER 68.024 0.0002169 72781000 2562.1 2196.8 2150.1 2134.7 2169.4 2054.7 1820.7 2173.4 2395.4 2532 TRUE FALSE FALSE 2261.774522 2264.480804 2266.34091 2221.762293 2009.367684 2015.510021 1890.925009 2420.811071 2296.660598 2516.939551 0.898620915 0.899696142 0.900435177 0.88272374 0.798337681 0.80077808 0.751279469 0.961807394 0.912481429 1 11.29745485 -8.011861492 0.307417957 1.023436659 0.814311014 0.301796954 0.06072655 0.948972041 0.250691218 0.078967526 0.044732325 9.73E-09 8.011861492 -0.209125645 YIS(ph)PDQLADLYK ddPTM_HeLa_CUDC101_4h_R1 1 YISPDQLADLYK 12 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 0 YIS(1)PDQLADLYK 133.48 0.0014539 12358000 1444.4 1022.1 824.39 1042.1 1221.4 1235.3 721.52 982.87 1118.5 1612.4 TRUE FALSE FALSE 1275.089622 1053.58969 868.959017 1084.601342 1131.299755 1211.738711 749.3492681 1094.755948 1072.394957 1602.809373 0.795534168 0.657339361 0.542147452 0.676687671 0.705823022 0.756009249 0.46752239 0.683023176 0.669072052 1 10.64638714 -8.007973892 0.652810948 0.9822097 0.629755992 0.118422542 0.127586453 0.242901394 0.233201076 0.034937845 0.023513526 9.82E-09 8.007973892 -0.352453708 GFAFVTFDDHDSVDK ddPTM_HeLa_CUDC101_4h_R1 2 GFAFVTFDDHDSVDK 15 0 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8VZ49;A0A2R8Y4L2;Q32P51;H0YH80 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 ; ; 115.12 0.0014612 38515000 4352.6 2878.7 2546.4 2623.7 5053.6 3933.4 3630.8 3159.7 3639.3 4296.6 FALSE FALSE TRUE 3842.394826 2967.389335 2684.066086 2730.705827 4680.805996 3858.376948 3770.841172 3519.387476 3489.286514 4271.043632 0.899638392 0.694769146 0.62843331 0.639353297 1.095939634 0.903380363 0.882885191 0.824011127 0.816963444 1 12.06037292 -7.7679867 2.031691611 0.966811758 0.814777987 0.042509756 0.140917796 0.369682616 3.180748628 0.029243019 0.028599124 1.71E-08 7.7679867 -0.152033771 GFAFVTFDDHDTVDK ddPTM_HeLa_CUDC101_4h_R1 2 GFAFVTFDDHDTVDK 15 0 P51991;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 ; ; 176.43 2.85E-07 69925000 6878.5 4172.5 4532.7 4292.5 6691.4 6326.1 5863 5477.4 6935.4 6526.9 FALSE FALSE TRUE 6072.212657 4301.049779 4777.751473 4467.566704 6197.788753 6205.440183 6089.137874 6100.925076 6649.519877 6488.077709 0.935903195 0.662915886 0.736389373 0.688580949 0.955258095 0.956437401 0.938511859 0.940328607 1.024882897 1 12.66357538 -7.494184727 14.85909264 0.971734619 0.839616303 0.285546519 0.107358145 3.696025753 1914.357071 0.020404243 0.022380768 3.20E-08 7.494184727 -0.132118316 NGTSGSDS(ph)PGQAVEAEEIVK ddPTM_HeLa_CUDC101_4h_R1 4 NGTSGSDSPGQAVEAEEIVK 20 0 Q05D32 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 NGTSGS(0.003)DS(0.997)PGQAVEAEEIVK;NGTSGSDS(1)PGQAVEAEEIVK;NGTSGSDS(1)PGQAVEAEEIVK;NGTS(0.011)GS(0.104)DS(0.885)PGQAVEAEEIVK ;;; 265.27 1.83E-71 46830100 7304.17 6622.88 7007.29 6551.87 7626.1 7011.69 6810.06 4543 6734.3 5993.32 TRUE FALSE FALSE 6447.986265 6826.923083 7386.125293 6819.083578 7063.537796 6877.953696 7072.726295 5060.156757 6456.709304 5957.671466 1.082299738 1.145904591 1.239767136 1.144588723 1.185620563 1.154470121 1.18716286 0.849351426 1.083763907 1 12.54053285 -8.00537922 1.081582604 1.017798104 1.137437877 0.08256942 0.102444952 0.488080632 1.202065627 0.025622705 0.020738489 9.88E-09 8.00537922 0.119639773 AY(ph)FET(ph)EKKHFT(ph)ILDAPGHK ddPTM_HeLa_CUDC101_4h_R1 1 AYFETEKKHFTILDAPGHK 19 2 H3BR35;P15170;P15170-2;P15170-3;H3BSV8 H3BR35 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 3 0 AY(1)FET(1)EKKHFT(1)ILDAPGHK 41.482 0.0033023 0 224.91 184.5 172.29 127.24 98.918 179.65 131.85 195.69 65.263 269.63 TRUE FALSE FALSE 198.5463907 190.1842263 181.6045185 132.4293972 91.62101621 176.2234756 136.9354987 217.9665586 62.57283152 268.0262288 0.740772243 0.709573191 0.677562489 0.494091186 0.341836008 0.657485935 0.510903352 0.813228465 0.233457866 1 8.066230378 -8.002045346 0.531825546 0.989468958 0.55987893 0 0.262839876 0.375667887 0.25010518 0.065586156 0.040775881 9.95E-09 8.002045346 -0.429590029 GFAYVQFEDVRDAEDALHNLDR ddPTM_HeLa_CUDC101_4h_R1 2 GFAYVQFEDVRDAEDALHNLDR 22 1 O75494-6;O75494-3;Q5JRI1;O75494-5;O75494-4;O75494-2;O75494 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 0 0 ; ; 111.09 8.65E-06 11320800 1994.29 2180.91 2068.55 2227.45 2307.67 2309.27 2312.6 2295.4 2350.3 2245.83 FALSE FALSE TRUE 1760.522349 2248.101252 2180.38207 2318.295039 2137.437782 2265.224522 2401.797757 2556.699058 2253.419639 2232.471703 0.788597834 1.007001006 0.976667282 1.038443191 0.957431074 1.014671102 1.075846898 1.145232459 1.009383293 1 11.12442617 -4.743223097 0.53416951 0.909538824 1.214334417 0.330160368 0.071211188 1.975220719 0.518549081 0.018868868 0.338892859 1.81E-05 4.743223097 0.304795592 GFAYVQFEDVRDAEDALHNLDRK ddPTM_HeLa_CUDC101_4h_R1 1 GFAYVQFEDVRDAEDALHNLDRK 23 2 O75494-6;O75494-3;Q5JRI1;O75494-5;O75494-4;O75494-2;O75494 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 0 0 38.26 0.033641 7864300 3195.1 3444.3 3433.7 3532.5 4366 3944.6 3823.7 4244.5 3570.8 3578.5 FALSE FALSE TRUE 2820.575221 3550.4148 3619.336208 3676.570619 4043.928878 3869.363327 3971.18139 4727.676723 3423.610113 3557.214923 0.792916729 0.998088358 1.017463461 1.03355313 1.136824444 1.087750786 1.116373758 1.32903882 0.962441176 1 11.79653243 -5.589966881 0.660172983 0.906335524 1.247995918 0.6617458 0.07615331 0.526052384 0.366257057 0.019107576 0.098539748 2.57E-06 5.589966881 0.341660394 GFCFITFK ddPTM_HeLa_CUDC101_4h_R1 2 GFCFITFK 8 0 Q14103-3;Q14103;H0YA96;Q14103-4;H0Y8G5;Q14103-2 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 0 ; ; 119.21 0.014633 598450 457.57 205.71 127.34 325.79 204.836 137.74 126.9 76.241 0 0 FALSE FALSE TRUE 403.9343382 212.0476813 134.2243856 339.0771244 189.7256564 135.112839 131.7945755 84.91996726 0 0 0 GFCFLEYEDHK ddPTM_HeLa_CUDC101_4h_R1 2 GFCFLEYEDHK 11 0 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5;O43390;B4DT28;O43390-4;O43390-3;O43390-2 O60506-2;O43390 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R 0 0 ; ; 138.76 0.0013682 189848000 8114.2 7581.5 7194.8 7071.6 7413.7 6728.9 7074.5 7634.1 7261.3 5541.8 FALSE FALSE TRUE 7163.065776 7815.077029 7583.772651 7360.010414 6866.806121 6600.557444 7347.365835 8503.135086 6961.986141 5508.837127 1.30028636 1.41864369 1.376655812 1.336037034 1.246507378 1.198176183 1.333741707 1.54354447 1.263785075 1 12.42753209 -8.895351252 0.669344695 0.988428665 1.342580607 0.233080684 0.119503756 0.378838212 0.306818474 0.07232684 0.021406963 1.27E-09 8.895351252 0.354151941 GFCYVEFDEVDSLK ddPTM_HeLa_CUDC101_4h_R1 1 GFCYVEFDEVDSLK 14 0 Q15056;Q15056-2 Q15056 EIF4H Eukaryotic translation initiation factor 4H 0 0 197.31 1.00E-15 13962000 1168.6 1101 928.41 996.32 776.49 814.27 696.86 576.11 888.98 826.76 FALSE FALSE TRUE 1031.618479 1134.920505 978.6026529 1036.954236 719.2098797 798.7391564 723.7381236 641.6920337 852.3358681 821.8423948 1.25525099 1.380946654 1.190742482 1.261743423 0.875118982 0.971888481 0.880628851 0.780796948 1.037103797 1 9.682717944 -5.749232019 24.99456077 1.159718845 0.884129711 0.638153401 0.11333884 152.5250585 312292.8889 0.020338917 0.040442661 1.78E-06 5.749232019 -0.275589134 GFDQDMANK ddPTM_HeLa_CUDC101_4h_R1 4 GFDQDMANK 9 0 E2QRB9;E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881-7;Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881 E2QRB9 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ;;; ;;; 151.04 0.00010823 46971000 13650 11664.3 11378.6 12183.9 10890.8 11076.6 10142.4 11817 11679.1 2469.74 FALSE FALSE TRUE 12049.96769 12023.66326 11993.76153 12680.81211 10087.40738 10865.33231 10533.59577 13162.19951 11197.68255 2455.049877 4.908237428 4.897523008 4.885343328 5.165195309 4.1088401 4.425707361 4.290583204 5.361275809 4.561081492 1 11.26153662 -9.177007202 0.745211914 0.77858125 4.757830409 0.04894418 1.150538472 0.152805204 0.14055283 0.369185278 0.085604075 6.65E-10 9.177007202 3.979249159 GFDQTINLILDESHER ddPTM_HeLa_CUDC101_4h_R1 2 GFDQTINLILDESHER 16 0 F2Z2Y6;C9JIZ0;C9JNV3;O95777 F2Z2Y6 LSM8 U6 snRNA-associated Sm-like protein LSm8 0 0 ; ; 151.11 0.00015348 11586900 4906.1 4721.5 4090 4072.3 4895.5 3969.2 4654.4 4228.3 5032.8 4753.9 FALSE FALSE TRUE 4331.014395 4866.963819 4311.117772 4238.385996 4534.368718 3893.494123 4833.921767 4709.632581 4825.345854 4725.623591 0.916495847 1.029909328 0.912285477 0.89689454 0.95952812 0.823911183 1.022917224 0.996616106 1.021102456 1 12.206289 HSS(ph)IS(ph)PVRLPLNSSLGAELSR ddPTM_HeLa_CUDC101_4h_R1 1 HSSISPVRLPLNSSLGAELSR 21 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 HS(0.266)S(0.808)IS(0.843)PVRLPLNS(0.044)S(0.039)LGAELS(0.001)R 56.453 0.026754 64190000 2741.7 2296 2005 1533.3 2636.7 2290.1 2681.2 1964.6 2618.1 2704.4 TRUE FALSE FALSE 2420.322082 2366.737039 2113.396365 1595.834601 2442.195894 2246.420158 2784.614782 2188.242123 2510.18081 2688.314109 0.900312235 0.880379652 0.786141901 0.5936191 0.908448863 0.835624137 1.035821957 0.813983052 0.933737915 1 11.392486 -8.000013323 0.927391255 0.98074208 0.836913223 0.189362051 0.106031117 0.525298063 0.965708925 0.031916942 0.024782159 1.00E-08 8.000013323 -0.143828856 NSLPAS(ph)PAHQLSS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 NSLPASPAHQLSSSPR 16 0 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 2 0 NS(0.294)LPAS(0.706)PAHQLS(0.371)S(0.54)S(0.089)PR 99.414 0.014675 11689000 3500.6 2736.2 2334.9 2450.9 3246.5 3025.8 2873.6 3100.7 3423.9 3423.7 TRUE FALSE FALSE 3090.264975 2820.499079 2461.131757 2550.858296 3007.012163 2968.087906 2984.435715 3453.671155 3282.765393 3403.33568 0.90801063 0.828745485 0.723152809 0.749517102 0.883548508 0.872111418 0.876914884 1.014790041 0.964572908 1 11.73273374 -7.999426062 1.171729817 0.97877075 0.847223929 0.304729355 0.076783862 0.355310072 1.020749541 0.020945941 0.01733706 1.00E-08 7.999426062 -0.131546821 GFFDPNTEENLTYLQLMER ddPTM_HeLa_CUDC101_4h_R1 1 GFFDPNTEENLTYLQLMER 19 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 193.28 2.76E-13 12058000 2949.6 2192.9 2264.9 2464.7 2624.3 2248.7 2420.8 2463.4 2468.2 2410.6 FALSE FALSE TRUE 2603.852359 2260.46065 2387.347345 2565.221119 2430.710617 2205.809794 2514.171067 2743.823499 2366.459751 2396.261644 1.086631072 0.943327977 0.996279914 1.070509611 1.014376132 0.920521263 1.049205571 1.145043366 0.987563173 1 11.22656973 GFFDPNTHENLTYLQLLER ddPTM_HeLa_CUDC101_4h_R1 1 GFFDPNTHENLTYLQLLER 19 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9;A0A075B730;P58107 Q15149;Q15149-3;Q15149-4;Q15149-9;A0A075B730;P58107 PLEC;EPPK1 Plectin;Epiplakin 0 0 156.17 2.34E-05 46318000 2938.9 2874 2149.8 2418 2839.5 2750.6 2443.8 2292.4 2278.5 3227.4 FALSE FALSE TRUE 2594.406597 2962.544533 2266.024691 2516.616491 2630.035742 2698.136888 2538.058185 2553.35755 2184.579266 3208.203281 0.808678992 0.923427936 0.706322041 0.784431743 0.819784631 0.841011822 0.791115139 0.795883966 0.680935425 1 11.64754984 -9.367258438 0.48211946 1.052878355 0.799603026 0 0.111978078 0.806341886 0.237507159 0.099791656 0.013402887 4.29E-10 9.367258438 -0.253275329 GFFDPNTHENLTYR ddPTM_HeLa_CUDC101_4h_R1 2 GFFDPNTHENLTYR 14 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 175.29 2.39E-07 53032000 6247.5 5059.4 4743.3 5558.6 5781.2 5196 5020.7 4461.2 5329.9 5033.7 FALSE FALSE TRUE 5515.177521 5215.274117 4999.737146 5785.303734 5354.732394 5096.894957 5214.350081 4969.044975 5110.199266 5003.759329 1.102206793 1.042271175 0.999196168 1.156191446 1.070141876 1.018613131 1.042086507 0.993062346 1.021271994 1 12.28879668 -4.137957871 1.348276417 1.053420331 0.957370514 0.129063874 0.046062291 3.245015489 4.141899631 0.007664031 0.457991605 7.28E-05 4.137957871 -0.096049817 GFFDPNTHENLTYVQLLR ddPTM_HeLa_CUDC101_4h_R1 2 GFFDPNTHENLTYVQLLR 18 0 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 ; ; 191.44 7.49E-12 42819000 4459.9 4209.1 3596.8 3886.1 4627.3 4235.2 4091.6 3505.1 3991.5 4103.9 FALSE FALSE TRUE 3937.117283 4338.777382 3791.253888 4044.591955 4285.953298 4154.420616 4249.414383 3904.106416 3826.968681 4079.48982 0.965100406 1.063558821 0.929345103 0.991445532 1.050610122 1.018367688 1.041653386 0.957008496 0.938099824 1 11.99417303 -5.97272884 24.56508447 0.985540618 1.019062261 0.144686938 0.041807965 261.0902662 235181.2093 0.005465189 0.009906319 1.06E-06 5.97272884 0.033521643 VIY(ph)DFIEK ddPTM_HeLa_CUDC101_4h_R1 1 VIYDFIEK 8 0 O00401 O00401 WASL Neural Wiskott-Aldrich syndrome protein 1 0 VIY(1)DFIEK 137.9 0.027867 9990400 2081 1605.6 1909.4 1900 2149.1 1481.7 1075.3 389.26 1783.9 1640.1 TRUE FALSE FALSE 1837.068335 1655.066633 2012.62794 1977.490213 1990.565175 1453.439041 1116.774681 433.571785 1710.366887 1630.344612 1.126797562 1.015163678 1.234480075 1.212927744 1.220947498 0.891491915 0.684993021 0.265938736 1.049083043 1 10.67096123 -4.493154728 1.594855885 1.091045706 0.162213101 0.896623771 0.091439564 0.172488981 0.570352799 0.015208767 0.215566315 3.21E-05 4.493154728 -0.928832605 down GFGDHIHWR ddPTM_HeLa_CUDC101_4h_R1 1 GFGDHIHWR 9 0 V9GY50;V9GYV4;O95881 V9GY50 TXNDC12 Thioredoxin domain-containing protein 12 0 0 78.264 0.0029655 0 4727.5 4154.4 3408.6 3872.7 4262.2 4029.3 3862.6 3484.4 3937.3 2244 FALSE FALSE TRUE 4173.349616 4282.39214 3592.879226 4030.645445 3947.785997 3952.447816 4011.581776 3881.050012 3775.002827 2230.652588 1.870909723 1.91979341 1.610685252 1.806935543 1.76978971 1.7718796 1.798389313 1.739872014 1.692331135 1 11.12325012 -9.237453131 0.820563427 0.964202776 1.789910705 0.169939461 0.224698204 0.137858818 0.155720088 0.073497933 0.017234252 5.79E-10 9.237453131 0.825707929 SSS(ph)TTPPPPST(ph)S(ph)SS(ph)SCGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SSSTTPPPPSTSSSSCGSR 19 0 U3KPY4 U3KPY4 TMEM259 5 0 S(0.215)S(0.245)S(0.32)T(0.147)T(0.092)PPPPS(0.351)T(0.595)S(0.529)S(0.529)S(0.515)S(0.525)CGS(0.938)R 40.779 0.0032756 0 404.17 268.26 253.75 292.43 297.91 250.91 308.67 168.9 328.93 467.67 TRUE FALSE FALSE 356.7938053 276.5247726 267.4684926 304.3565594 275.9337728 246.1243098 320.5755053 188.1268933 315.3713662 464.888278 0.767482903 0.594819843 0.575339292 0.654687532 0.59354857 0.529426792 0.689575368 0.404671191 0.678380981 1 8.860740239 -7.998856421 0.444223199 1.018943336 0.542622288 0.340210144 0.12189837 0.260528836 0.126870186 0.050381694 0.029691017 1.00E-08 7.998856421 -0.476321048 DKMEGS(ph)DFESSGGR ddPTM_HeLa_CUDC101_4h_R1 1 DKMEGSDFESSGGR 14 1 A0A1B0GW41;Q8WYH8-2;Q8WYH8;E9PEN0 A0A1B0GW41 ING5 Inhibitor of growth protein 5 1 0 DKMEGS(0.958)DFES(0.042)SGGR 137.27 0.0030509 15418000 1804.7 1425.7 1076.1 1203.1 1336.1 1616.3 1249 1324.2 1447.3 1965.5 TRUE FALSE FALSE 1593.155802 1469.624127 1134.277221 1252.167618 1237.538565 1585.47177 1297.174348 1474.941575 1387.641681 1953.809119 0.815410158 0.752184087 0.58054659 0.640885338 0.633397886 0.811477311 0.663920716 0.754905667 0.710223772 1 10.93207381 -7.995650181 0.751809002 0.974110679 0.682966985 0.139854285 0.106521232 0.210056135 0.261101736 0.02503797 0.018055319 1.01E-08 7.995650181 -0.291143694 SGPS(ph)PLSSPNGK ddPTM_HeLa_CUDC101_4h_R1 3 SGPSPLSSPNGK 12 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 S(0.01)GPS(0.988)PLS(0.001)S(0.001)PNGK;SGPS(0.998)PLS(0.002)SPNGK;S(0.004)GPS(0.996)PLSSPNGK ;; 172.33 7.54E-07 138511400 9765.2 9111.3 8179.8 8984.5 9482.2 8806.9 8573.3 8273.7 9298 8238.1 TRUE FALSE FALSE 8620.538059 9392.008353 8622.024731 9350.926744 8782.716997 8638.923056 8903.975053 9215.544565 8914.732505 8189.099415 1.052684504 1.146891481 1.052866047 1.14187486 1.07248875 1.054929562 1.087296002 1.125342861 1.088609633 1 12.99948909 -7.993365112 1.005699378 1.010362962 1.094359426 0.099648139 0.04136111 0.247474628 0.53062788 0.008915133 0.007123399 1.02E-08 7.993365112 0.083996464 ASSHS(ph)SQTQGGGSVTK ddPTM_HeLa_CUDC101_4h_R1 2 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AS(0.028)S(0.215)HS(0.614)S(0.139)QT(0.005)QGGGSVTK;AS(0.217)S(0.217)HS(0.542)S(0.025)QTQGGGSVTK ; 114.9 0.00066917 56921500 16261.4 3384 9730.5 9376.7 13811 10854.4 15846.7 5046.9 18019.2 20054.9 TRUE FALSE FALSE 14355.26334 3488.257029 10256.56026 9759.122356 12792.19005 10647.3704 16457.91253 5621.418696 17276.44095 19935.61256 0.720081377 0.174976165 0.51448433 0.489532104 0.641675294 0.534087948 0.82555339 0.281978729 0.866611994 1 14.28306032 -7.992816848 1.279006155 0.932546701 0.518986329 0.465526048 0.179600553 0.22894159 0.779189891 0.043556104 0.036827958 1.02E-08 7.992816848 -0.413560371 GFGFVDFNSEEDAK ddPTM_HeLa_CUDC101_4h_R1 3 GFGFVDFNSEEDAK 14 0 P19338;H7BY16 P19338 NCL Nucleolin 0 0 ;; ;; 222.99 5.31E-32 155929000 7291.4 7198.7 7361.9 7331.7 8457.7 7739.6 6929.1 7175.4 8193.1 7310.2 FALSE FALSE TRUE 6436.713145 7420.483414 7759.906583 7630.718416 7833.792321 7591.980025 7196.357708 7992.218532 7855.37695 7266.718605 0.885779881 1.021160144 1.06786942 1.050091359 1.07803711 1.044760426 0.990317377 1.099838726 1.08100745 1 12.82708833 -7.060121986 6.335237969 0.946163761 1.052011786 0.094903634 0.056411336 0.137112782 11.40261608 0.008047194 0.009934718 8.71E-08 7.060121986 0.105848025 GFGFVEFEDPRDADDAVYELDGK ddPTM_HeLa_CUDC101_4h_R1 2 GFGFVEFEDPRDADDAVYELDGK 23 1 B4DJK0;B4DUA4;Q13243;G3V5K8;Q13243-2 B4DJK0 SRSF5 Serine/arginine-rich splicing factor 5 0 0 ; ; 129.02 1.98E-07 41934000 5805.1 4930.65 4665.9 4600.5 5695.7 4855.1 4934.19 4502.92 5708.3 5828 FALSE FALSE TRUE 5124.634978 5082.557482 4918.152668 4788.128275 5275.539558 4762.497057 5124.503361 5015.514211 5473.001458 5793.334797 0.884574284 0.877311196 0.848932927 0.826489137 0.910622248 0.822064877 0.884551565 0.865738713 0.944706572 1 12.50017833 -8.856881728 0.5382611 1.012697642 0.858681215 0.667378601 0.029711332 0.319964499 0.16137067 0.024144083 0.006354964 1.39E-09 8.856881728 -0.154016427 GFGFVLFK ddPTM_HeLa_CUDC101_4h_R1 1 GFGFVLFK 8 0 Q14103-3;Q14103;H0YA96;D6RAF8;Q14103-4;H0Y8G5;Q14103-2;D6RF44;D6RBQ9;O14979-3;O14979-2;A0A087WUK2;O14979 Q14103-3;O14979-3 HNRNPD;HNRNPDL Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like 0 0 122.15 0.019231 4776800 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 NWEDEDFYDS(ph)DDDTFLDR ddPTM_HeLa_CUDC101_4h_R1 1 NWEDEDFYDSDDDTFLDR 18 0 A0A087X0M4;Q9BWU0;A0A087WWF4 A0A087X0M4 SLC4A1AP Kanadaptin 1 0 NWEDEDFY(0.004)DS(0.967)DDDT(0.029)FLDR 72.399 0.0023719 0 625.78 609.67 448.03 442.44 474.36 500.28 402.25 491.7 542.65 692.53 TRUE FALSE FALSE 552.427017 628.4532101 472.251857 460.4846156 439.3674079 490.7379925 417.7649172 547.6731405 520.2817373 688.4108008 0.802467097 0.912904343 0.686002975 0.668909632 0.638234332 0.712856324 0.6068541 0.795561516 0.755772188 1 9.427125922 -7.992506271 0.36071702 1.024289881 0.65651814 0.251655563 0.101733003 0.501846293 0.172766763 0.074368572 0.042768328 1.02E-08 7.992506271 -0.367771742 GFGFVTFDDHDPVDK ddPTM_HeLa_CUDC101_4h_R1 2 GFGFVTFDDHDPVDK 15 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 133.48 0.00055363 836090000 10663.3 9083.8 8867.6 9374.2 9428.8 9337.8 9089.1 8995.8 9282.4 10023.3 FALSE FALSE TRUE 9413.364139 9363.661111 9347.009279 9756.520395 8733.256209 9159.697023 9439.669632 10019.84551 8899.775543 9963.680966 0.944767719 0.939779299 0.938108046 0.97920843 0.876509017 0.919308542 0.947407857 1.005636927 0.893221649 1 13.28246311 -9.036687261 0.64145776 1.004252856 0.940783029 0 0.046162838 0.868131509 0.597922203 0.030166301 0.007307239 9.19E-10 9.036687261 -0.063469827 GFGFVTFDDHDPVDKIVLQK ddPTM_HeLa_CUDC101_4h_R1 2 GFGFVTFDDHDPVDKIVLQK 20 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 113.67 5.46E-05 30790000 4011.3 5345.5 4742.6 5119.9 7714.8 5363.5 6246.5 8127.1 5088.8 3971 FALSE FALSE TRUE 3541.101495 5510.188519 4998.999302 5328.711652 7145.694574 5261.200174 6487.429597 9052.256213 4879.03751 3947.380315 0.897076342 1.395910219 1.26640934 1.349936218 1.810237171 1.332833361 1.643477213 2.293231331 1.236019111 1 11.94667981 -1 0.242217032 0.889731657 8.525844773 0.673221758 0.220292839 16.192784 0.200289843 0.122834205 50.42369518 0.1 1 7.636113116 GFGFVYFQNHDAADK ddPTM_HeLa_CUDC101_4h_R1 3 GFGFVYFQNHDAADK 15 0 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 0 ;; ;; 124.42 0.0019447 20603170 5789.7 4744.19 4573.08 4140.73 5024.5 4501.6 4550.29 4444.53 5032.72 4818.58 FALSE FALSE TRUE 5111.040143 4890.352871 4820.314538 4309.606867 4653.852645 4415.73948 4725.79621 4950.47733 4825.269151 4789.918872 1.067041067 1.020967787 1.006345758 0.899724397 0.971593209 0.921881894 0.986612996 1.033520079 1.007380142 1 12.22578551 -6.499680285 11.16205645 1.03088935 0.961298594 0.370094451 0.037709505 0.622259952 296.9576914 0.006353344 0.009553848 3.16E-07 6.499680285 -0.069590756 GFGGITHGPPEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 GFGGITHGPPEKK 13 1 P49748-2;P49748;P49748-3 P49748-2 ACADVL "Very long-chain specific acyl-CoA dehydrogenase, mitochondrial" 0 1 GFGGITHGPPEK(1)K 85.536 0.024366 1188600 1625.8 1007.2 688.19 823.45 1739.6 1473.7 1381 1252 1375 1316 FALSE TRUE FALSE 1435.226189 1038.230638 725.3956331 857.0338503 1611.273174 1445.591628 1434.265633 1394.522619 1318.321918 1308.172373 1.097123145 0.79364972 0.554510742 0.655138319 1.231697907 1.105046749 1.096388872 1.066008309 1.007758568 1 10.35333694 -7.293262863 24.61858987 1.045863705 0.928850111 0.053784329 0.202275541 1344.058299 1039757.623 0.038360156 0.043868793 5.09E-08 7.293262863 -0.117013594 NEGNLENEGKPEDEVEPDDEGKS(ph)DEEEKPDVEGK ddPTM_HeLa_CUDC101_4h_R1 1 NEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGK 34 3 Q969E4 Q969E4 TCEAL3 Transcription elongation factor A protein-like 3 1 0 NEGNLENEGKPEDEVEPDDEGKS(1)DEEEKPDVEGK 73.166 2.44E-06 26200000 1627.4 1102.1 1172.5 1498.5 1168.7 1095.5 1388.2 982.46 1349.6 1670.8 TRUE FALSE FALSE 1436.638639 1136.054395 1235.888897 1559.615307 1082.487329 1074.605163 1441.743339 1094.299275 1293.968917 1660.862007 0.864995787 0.684014921 0.744124973 0.939039667 0.651762353 0.647016524 0.868069311 0.65887429 0.779094778 1 10.6977165 -7.991445248 0.547047573 0.998986692 0.732894671 0.104187809 0.115080897 0.439295216 0.307868877 0.047322613 0.03002716 1.02E-08 7.991445248 -0.26609202 IGEVSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 IGEVSSPK 8 0 A0A1W2PP02;P35251-2;P35251 A0A1W2PP02;P35251-2 RFC1 Replication factor C subunit 1 1 0 IGEVS(0.152)S(0.848)PK 83.647 0.037714 178930000 15447 13347 14297 13241 10574 10420 7847.4 3068.8 11512 14094 TRUE FALSE FALSE 13636.32608 13758.20525 15069.93907 13781.02521 9793.977086 10221.25586 8150.076847 3418.139787 11037.47049 14010.16826 0.973316367 0.982015704 1.075642975 0.983644518 0.69906206 0.729559822 0.581725836 0.243975641 0.787818553 1 13.77418666 -4.486493364 0.725843971 0.996121178 4.87E-15 0.844360583 0.095391557 0.407292356 0.181542098 0.011742921 0.309304649 3.26E-05 4.486493364 -0.996121178 down GFGGK(ac)YGIDK ddPTM_HeLa_CUDC101_4h_R1 1 GFGGKYGIDK 10 1 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 1 GFGGK(1)YGIDK 93.096 0.017035 924240 211.16 370.41 394.8 442.28 458.54 404.25 595.5 522.91 290.5 125.86 FALSE TRUE FALSE 186.4081449 381.8218931 416.1440822 460.3180901 424.7144177 396.5396048 618.4686345 582.4359607 278.525467 125.1113791 1.489937576 3.05185584 3.326188914 3.679266373 3.394690561 3.169492716 4.943344393 4.655339625 2.226220101 1 6.967069201 -6.768203738 0.511653141 0.954253985 4.501379935 0.725941054 0.620815185 0.221178767 0.125750247 0.168680998 0.305072797 1.71E-07 6.768203738 3.54712595 GFGGK(ac)YGVQK ddPTM_HeLa_CUDC101_4h_R1 1 GFGGKYGVQK 10 1 Q14247;Q14247-3;Q14247-2 Q14247 CTTN Src substrate cortactin 0 1 GFGGK(1)YGVQK 152.47 0.00040276 817510 690.72 448.5 278.47 925.43 924.05 704.83 587.77 635.68 110.77 55.89 FALSE TRUE FALSE 609.7548487 462.3177534 293.5249305 963.1730354 855.8846725 691.3865421 610.4404858 708.0432417 106.2040137 55.55756379 10.97519054 8.321418756 5.283257769 17.33648795 15.40536723 12.44450791 10.98753156 12.74431767 1.911603146 1 5.795911433 -8.749224834 0.419695763 6.27E-12 12.91834933 0.67152166 2.970748259 0.781899288 0.244369692 4.371592445 1.174533123 1.78E-09 8.749224834 12.91834933 GFGLEGVPEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GFGLEGVPEKR 11 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 0 1 ; GFGLEGVPEK(1)R;GFGLEGVPEK(1)R 123.63 0.0016914 7748600 3151.6 2453.37 2070.52 2175.6 1892.57 2026.98 2161.27 1694.57 2762.11 3231.5 FALSE TRUE FALSE 2782.174226 2528.955422 2182.458574 2264.330372 1752.958882 1988.318734 2244.630908 1887.472999 2648.254657 3212.278894 0.866106063 0.787277663 0.679411298 0.704898437 0.545705693 0.618974503 0.698765886 0.587580674 0.824416168 1 11.64938144 -7.187549166 0.640005948 0.97563029 0.610484545 0.755242556 0.065323416 0.13455077 0.11866974 0.01375376 0.017273543 6.49E-08 7.187549166 -0.365145745 AESPGPGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 AESPGPGSR 9 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 AES(0.005)PGPGS(0.995)R 101.66 0.016182 4936200 4641.6 983.32 4423.6 4205.6 1843.3 2173.8 2110.3 837.68 4903 6178.6 TRUE FALSE FALSE 4097.518684 1013.614924 4662.753197 4377.122546 1707.323431 2132.338387 2191.694978 933.0381052 4700.896265 6141.849412 0.66714737 0.165034154 0.759177388 0.712671746 0.277981975 0.347181809 0.356846095 0.151914846 0.765387744 1 12.58445743 -7.988889394 0.156954943 1.398000741 6.43E-12 0.516714006 0.194545787 2.606990643 0.27541214 1.322148929 0.894712977 1.03E-08 7.988889394 -1.398000741 PY(ph)ECNKCGKAFSCSSSIR ddPTM_HeLa_CUDC101_4h_R1 1 PYECNKCGKAFSCSSSIR 18 2 Q6ZTB9 Q6ZTB9 ZNF833P Putative zinc finger protein 833 1 0 PY(1)ECNKCGKAFSCSSSIR 51.265 0.0031277 0 551.85 675.45 416.65 603.81 500.83 611.71 472.96 480.15 495.19 409.22 TRUE FALSE FALSE 487.1629796 696.2598139 439.1753593 628.4359817 463.8847687 600.0426509 491.2022256 534.8083352 474.7780586 406.7859412 1.197590502 1.711612284 1.079622757 1.54488127 1.140365784 1.475082077 1.207520162 1.31471686 1.167144708 1 8.668126009 -7.98736207 1.390529063 1.049956594 1.341166663 0.223503885 0.188664183 0.290527153 1.16314 0.040020983 0.034425809 1.03E-08 7.98736207 0.291210069 KPPAPPS(ph)PVQSQSPS(ph)TNWSPAVPVK ddPTM_HeLa_CUDC101_4h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(0.937)PVQS(0.018)QS(0.095)PS(0.398)T(0.361)NWS(0.192)PAVPVK 55.765 0.0043712 33137000 6127.4 4621.3 4971.8 4608.8 4794.9 4624.8 4701.5 4334.8 5475.8 6317.3 TRUE FALSE FALSE 5409.155461 4763.676775 5240.590547 4796.766785 4441.18978 4536.589645 4882.83843 4828.25611 5250.085206 6279.724419 0.861368286 0.758580546 0.834525562 0.763849887 0.70722686 0.722418588 0.777556164 0.76886433 0.836037516 1 12.61648553 -7.985955527 0.46724518 1.0051652 0.738937941 0.483439243 0.0580723 0.203942022 0.108661703 0.02197091 0.013285999 1.03E-08 7.985955527 -0.266227259 VSEDEEKLPAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 VSEDEEKLPASPK 13 1 Q7RTP6;J3QR21;J3QLA3 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 VSEDEEKLPAS(1)PK 110.22 0.022927 7913500 2454.4 2369.2 2333.3 2233.4 2285.2 1910.3 2321.4 2277.9 2682.1 2002.2 TRUE FALSE FALSE 2166.698953 2442.192244 2459.445256 2324.487706 2116.625349 1873.86421 2410.937176 2537.206928 2571.542703 1990.290825 1.088634347 1.227052958 1.235721546 1.167913591 1.063475409 0.941502712 1.211349188 1.274792054 1.29204369 1 10.95876354 -7.979670387 1.295739661 1.021828021 1.151229152 0 0.126421951 0.40768284 1.424093748 0.024276219 0.020706822 1.05E-08 7.979670387 0.129401132 YENLGLVGEGS(ph)Y(ph)GMVMK ddPTM_HeLa_CUDC101_4h_R1 1 YENLGLVGEGSYGMVMK 17 0 D6RBJ5;J3KNE8;Q92772 D6RBJ5 CDKL2 Cyclin-dependent kinase-like 2 2 0 Y(0.001)ENLGLVGEGS(0.999)Y(0.999)GMVMK 43.534 0.03823 15280000 628.23 776.42 756.84 660.17 896.67 1051.8 721.14 610.01 728.1 234.24 TRUE FALSE FALSE 554.5898317 800.3405799 797.7570597 687.0945861 830.5244405 1031.738667 748.9546114 679.4510727 698.0874098 232.8467301 2.381780631 3.437199138 3.42610377 2.950844901 3.566828876 4.430977696 3.216513331 2.918018529 2.998055457 1 7.863236812 -7.979424068 0.574814912 1.066416504 3.564024963 0.26418116 0.726311256 0.21323969 0.163347519 0.214595716 0.140329618 1.05E-08 7.979424068 2.497608459 GFIYVHK(ac)PPVHIR ddPTM_HeLa_CUDC101_4h_R1 1 GFIYVHKPPVHIR 13 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 1 GFIYVHK(1)PPVHIR 81.625 0.013102 3464100 1716.9 956.5 836.21 774.21 1574.8 1521.3 1675.9 1169.4 1637.5 1434.5 FALSE TRUE FALSE 1515.647585 985.9686313 881.418042 805.7856302 1458.630141 1492.283737 1740.540024 1302.519769 1570.001557 1425.96753 1.062890671 0.691438347 0.618119293 0.565079929 1.022905579 1.046506113 1.220602845 0.913428771 1.101007929 1 10.47772542 -7.325499686 24.99885993 1.029698429 0.873362506 0.15899038 0.193617027 363.9782548 142037.7904 0.036660677 0.04192308 4.73E-08 7.325499686 -0.156335923 GFIYVHKPPVHIR ddPTM_HeLa_CUDC101_4h_R1 2 GFIYVHKPPVHIR 13 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 0 ; ; 54.343 0.038296 8397700 4640.1 4499 4591.4 3955.1 4597.9 4540.7 4296.1 4509.3 4586.7 4626.5 FALSE FALSE TRUE 4096.194512 4637.608857 4839.624972 4116.406073 4258.722077 4454.093713 4461.802016 5022.620485 4397.634285 4598.981372 0.890674299 1.008399139 1.052325413 0.89506909 0.926014205 0.968495706 0.970171796 1.092115857 0.956219199 1 12.16709864 -4.216316576 2.723550342 0.954809759 1.127983319 0.386941538 0.048103666 0.495642123 4.395327387 0.007854273 0.201611302 6.08E-05 4.216316576 0.17317356 GFKDQIYDIFQK ddPTM_HeLa_CUDC101_4h_R1 2 GFKDQIYDIFQK 12 1 P60842;P60842-2;J3KT12;J3QS69;J3QL43;J3KTB5;J3KSZ0;J3QR64;J3KTN0 P60842 EIF4A1 Eukaryotic initiation factor 4A-I 0 0 ; ; 101.39 0.013027 14166700 7010.4 6027.4 5290.1 5838 6397.1 6205.8 5267.1 5377.4 6149.2 5286.7 FALSE FALSE TRUE 6188.651539 6213.09705 5576.098808 6076.098874 5925.198678 6087.434705 5470.253811 5989.54148 5895.727373 5255.254473 1.177612154 1.182263786 1.061052102 1.156194986 1.12748083 1.158352033 1.040911309 1.139724348 1.121872861 1 12.35954491 -9.417762017 1.138203389 0.999785216 1.132734758 0.04988188 0.057199901 0.296287079 0.684828441 0.031098782 0.007803465 3.82E-10 9.417762017 0.132949542 GS(ph)PDGSLQTGKPSAPKK ddPTM_HeLa_CUDC101_4h_R1 2 GSPDGSLQTGKPSAPKK 17 2 Q8IZL8;C9JFV4;E7EV54 Q8IZL8 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 GS(0.984)PDGS(0.016)LQTGKPSAPKK;GS(0.943)PDGS(0.056)LQT(0.001)GKPS(0.001)APKK ; 123.43 0.00024542 51827000 5301 5382.3 4587.2 5076.5 5513.7 5013 5142.1 4955.8 4970.6 4116.2 TRUE FALSE FALSE 4679.624816 5548.122283 4835.197908 5283.541613 5106.965336 4917.385377 5340.432519 5519.94824 4765.709764 4091.716659 1.143682519 1.355939999 1.181703991 1.291277489 1.248122918 1.201790297 1.30518141 1.34905437 1.164721353 1 11.99849053 -7.978040995 0.598128094 1.006585421 1.282624122 0.454067563 0.076489611 0.240656491 0.197862637 0.026751439 0.017797035 1.05E-08 7.978040995 0.276038701 GFPTIYFSPANKK ddPTM_HeLa_CUDC101_4h_R1 1 GFPTIYFSPANKK 13 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 0 93.623 0.009978 613110 313.33 231.57 318.09 170.3 279.32 290.43 235.74 235.34 232.26 114.86 FALSE FALSE TRUE 276.6019324 238.7043972 335.2869076 177.2455701 258.7151201 284.8905316 244.8325708 262.1301543 222.6861445 114.1768076 2.422575461 2.090655731 2.936558786 1.552378051 2.265916568 2.495169883 2.144328396 2.29582662 1.95036233 1 6.83512582 -9.255296855 0.810483443 0.932199969 2.281123202 0.251382204 0.437593654 0.313503802 0.34074598 0.273126169 0.061765093 5.56E-10 9.255296855 1.348923233 SKEFVS(ph)SDESSSGENK ddPTM_HeLa_CUDC101_4h_R1 1 SKEFVSSDESSSGENK 16 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 1 0 S(0.002)KEFVS(0.653)S(0.106)DES(0.239)S(0.001)SGENK 208.49 9.23E-23 16341000 3854.3 3120.9 3109.2 3317.1 3025.4 2149.6 1960 994.58 3404.4 3671.4 TRUE FALSE FALSE 3402.504797 3217.05123 3277.292757 3452.385676 2802.222269 2108.599961 2035.597857 1107.798967 3264.069191 3649.56235 0.932304882 0.881489593 0.8979961 0.945972515 0.767824194 0.577767896 0.557764921 0.303542962 0.894372771 1 11.83350775 -4.4864916 0.568713476 0.97078702 2.89E-19 0.938896295 0.052653908 0.42454369 0.10826161 0.009463628 0.257170941 3.26E-05 4.4864916 -0.97078702 down GFQVAPEHHNDHK ddPTM_HeLa_CUDC101_4h_R1 1 GFQVAPEHHNDHK 13 0 P21399 P21399 ACO1 Cytoplasmic aconitate hydratase 0 0 60.161 0.024256 3300900 3511.1 3460.4 3648.5 3504.1 3616.3 3930.7 3245.7 2875.6 3365.6 3872.2 FALSE FALSE TRUE 3099.53418 3567.010822 3845.748946 3647.012344 3349.532754 3855.728446 3370.887736 3202.94668 3226.868543 3849.167982 0.805247834 0.926696585 0.999111747 0.947480692 0.870196564 1.001704385 0.875744512 0.83211403 0.838328844 1 11.91033092 -4.528099902 24.8138365 0.919844232 0.843021611 0.166169179 0.065254164 182.6306593 867970.2516 0.01110694 0.041850702 2.96E-05 4.528099902 -0.076822621 S(ph)SVKTPESIVPIAPELQPSTSR ddPTM_HeLa_CUDC101_4h_R1 1 SSVKTPESIVPIAPELQPSTSR 22 1 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.287)S(0.287)VKT(0.26)PES(0.165)IVPIAPELQPSTSR 52.909 0.019391 42131000 949.45 1108.5 914.73 984.63 856.08 965.41 557.71 458.91 1155.4 1132.6 TRUE FALSE FALSE 838.1569103 1142.651571 964.1830707 1024.787467 792.928684 946.9964127 579.2210615 511.1504594 1107.773923 1125.863245 0.744457121 1.014911515 0.856394482 0.910223752 0.704285079 0.841129167 0.514468399 0.454007591 0.983932932 1 10.13681588 -4.486084728 0.872245267 0.887770368 0.256089359 0.72960306 0.09734759 0.776472846 0.539596939 0.017801241 0.432451338 3.27E-05 4.486084728 -0.631681009 down SST(ph)PLPTISSSAENTR ddPTM_HeLa_CUDC101_4h_R1 5 SSTPLPTISSSAENTR 16 0 P42166;P42167;G5E972;H0YJH7;P42167-2;P42167-3 P42166;P42167 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 S(0.006)S(0.074)T(0.92)PLPTISSSAENTR;S(0.001)S(0.007)T(0.992)PLPTISSSAENTR;S(0.005)S(0.005)T(0.99)PLPTISSSAENTR;S(0.002)S(0.081)T(0.917)PLPTISSSAENTR;S(0.001)S(0.016)T(0.981)PLPTISSS(0.001)AENTR ;;;; 236.12 1.21E-42 3882805000 19044.99 15445.09 14191.8 14900.42 14950.55 14846.57 14987.64 15228.04 17613.67 19170.7 TRUE FALSE FALSE 16812.56514 15920.93492 14959.05164 15508.12353 13847.67771 14563.39641 15565.7183 16961.53852 16887.62707 19056.67182 0.882240367 0.835452017 0.784977134 0.813789715 0.726657721 0.764215103 0.816812004 0.890057754 0.886179246 1 14.21800856 -7.976758008 0.630907504 0.989139842 0.792647587 0.502221426 0.052269194 0.23566711 0.213162417 0.018647726 0.012694554 1.05E-08 7.976758008 -0.196492256 TLS(ph)DDLDEAAK ddPTM_HeLa_CUDC101_4h_R1 1 TLSDDLDEAAK 11 0 A0A087WV29;Q9H0A0-2;Q9H0A0 A0A087WV29 NAT10 N-acetyltransferase 10 1 0 T(0.247)LS(0.753)DDLDEAAK 127.17 0.0026907 2775600 1715.6 1445.8 1255.4 1145.2 1735.9 1567.3 1310.2 1364.1 1734.8 1650.9 TRUE FALSE FALSE 1514.499969 1490.343384 1323.270721 1191.906206 1607.846115 1537.406364 1360.734853 1519.38363 1663.29081 1641.080373 0.922867638 0.908147711 0.806341202 0.726293621 0.979748549 0.936825757 0.829170146 0.92584352 1.013534033 1 10.68043018 -7.976069879 0.901864504 0.985399913 0.870701254 0.3499147 0.070098973 0.444687 0.775806381 0.021235281 0.016588533 1.06E-08 7.976069879 -0.11469866 GGPGSAVS(ph)PYPTFNPSSDVAALHK ddPTM_HeLa_CUDC101_4h_R1 3 GGPGSAVSPYPTFNPSSDVAALHK 24 0 P04083;Q5T3N1;Q5T3N0 P04083 ANXA1 Annexin A1;Annexin 1 0 GGPGS(0.002)AVS(0.996)PYPT(0.002)FNPSSDVAALHK;GGPGS(0.004)AVS(0.983)PY(0.013)PTFNPSSDVAALHK;GGPGS(0.428)AVS(0.541)PY(0.022)PT(0.008)FNPSSDVAALHK ;; 164.12 1.62E-09 191868000 7530 6624.7 6050.55 6267.7 7243.6 6764.26 6293.35 6095.8 6540.4 6766.8 TRUE FALSE FALSE 6647.344815 6828.799155 6377.661035 6523.323897 6709.254059 6635.243011 6536.086618 6789.721232 6270.801944 6726.550773 0.988224878 1.015200715 0.948132446 0.969787357 0.997428591 0.986425768 0.971684722 1.009391211 0.932246281 1 12.7156512 -7.972827008 0.713937041 0.99802758 0.983412404 0 0.027763671 1.11294851 1.259053903 0.006571447 0.00472147 1.06E-08 7.972827008 -0.014615176 GCDS(ph)PDPDTSYVLTPHTEEK ddPTM_HeLa_CUDC101_4h_R1 2 GCDSPDPDTSYVLTPHTEEK 20 0 Q02078-3;Q02078-5;Q02078 Q02078-3 MEF2A Myocyte-specific enhancer factor 2A 1 0 GCDS(0.989)PDPDT(0.008)S(0.003)YVLTPHTEEK;GCDS(1)PDPDTSYVLTPHTEEK ; 196.98 1.82E-17 169620000 9005.4 8553.7 8800 8101.4 10340.6 8014.8 8105.9 6831.1 9096.3 7130 TRUE FALSE FALSE 7949.800663 8817.229358 9275.754619 8431.810109 9577.794539 7861.931044 8418.547278 7608.724812 8721.346664 7087.590443 1.121650683 1.24403765 1.308731746 1.189658203 1.351347064 1.109253012 1.187786928 1.07352772 1.2305094 1 12.79107952 -7.96962833 1.06636574 1.02638769 1.210735271 0 0.103448336 0.272966461 0.654953041 0.021718378 0.017865593 1.07E-08 7.96962833 0.184347582 KIIPTLEEGLQLPS(ph)PTATSQLPLESDAVECLNYQHYK ddPTM_HeLa_CUDC101_4h_R1 1 KIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK 37 1 P61978;P61978-2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 KIIPTLEEGLQLPS(0.74)PT(0.175)AT(0.043)S(0.043)QLPLESDAVECLNYQHYK 116.64 1.80E-16 67854000 1372 1472.9 1161.8 1499.4 1780.6 1448.8 1571.4 1459.1 1431.5 803.74 TRUE FALSE FALSE 1211.17624 1518.278303 1224.610422 1560.552013 1649.248685 1421.166554 1632.009424 1625.198046 1372.492964 798.9593187 1.515942316 1.900319913 1.532756917 1.95323088 2.064246135 1.778772111 2.04266899 2.034143677 1.717850874 1 9.641978236 -7.968775152 0.327563421 0.865524005 2.080749115 0.333124102 0.257621701 0.330072885 0.098360456 0.160472221 0.094353685 1.07E-08 7.968775152 1.21522511 DGGGLAPPPGS(ph)CSPSLSPSSNR ddPTM_HeLa_CUDC101_4h_R1 2 DGGGLAPPPGSCSPSLSPSSNR 22 0 A8MUP8;P10276-3;P10276-2;P10276 A8MUP8 RARA Retinoic acid receptor alpha 1 0 DGGGLAPPPGS(0.573)CS(0.389)PS(0.028)LS(0.009)PS(0.001)SNR;DGGGLAPPPGS(0.506)CS(0.101)PS(0.378)LS(0.012)PS(0.002)S(0.001)NR ; 183.18 2.51E-13 18511400 11389.9 13077.7 13887.3 13320.4 12673 12145.1 11940.5 5940.4 7272.5 7139.9 TRUE FALSE FALSE 10054.79319 13480.60844 14638.08944 13863.66349 11738.13804 11913.45245 12401.04908 6616.631124 6972.724472 7097.431557 1.416680542 1.899364344 2.062448835 1.953335284 1.653857166 1.678558272 1.747258707 0.932257123 0.982429266 1 12.79308132 -7.968703666 1.168194889 1.097001087 1.716117336 0.44623982 0.300857723 0.281703056 0.805668567 0.07728114 0.064949514 1.07E-08 7.968703666 0.619116249 GFVEFAAK(ac)PPAR ddPTM_HeLa_CUDC101_4h_R1 1 GFVEFAAKPPAR 12 1 Q8WXF1;X6RDA4;Q8WXF1-2 Q8WXF1 PSPC1 Paraspeckle component 1 0 1 GFVEFAAK(1)PPAR 99.283 0.013504 412110 0 0 0 140.69 213.45 144.93 189.64 180.46 156.55 0 FALSE TRUE FALSE 0 0 0 146.4279463 197.7042188 142.1657017 196.9544783 201.002837 150.0969427 0 0 GFVPEK(ac)NFR ddPTM_HeLa_CUDC101_4h_R1 1 GFVPEKNFR 9 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 1 GFVPEK(1)NFR 86.67 0.035636 2417800 1727.3 1727.3 863.73 2287.1 2505.9 2346.1 2206.6 2325.9 684.37 387.37 FALSE TRUE FALSE 1524.828512 1780.516066 910.4258564 2380.377824 2321.044749 2301.352051 2291.709301 2590.671054 656.1599789 385.065906 3.959915663 4.623925509 2.364337746 6.181741324 6.02765582 5.976514709 5.951472892 6.72786402 1.704019932 1 8.588961581 -7.395276006 0.221325366 6.92E-11 7.706340819 0.815359544 0.85210936 0.683176534 0.143293348 2.01030735 1.998389797 4.02E-08 7.395276006 7.706340819 TEDEEFLIQHLLQAPS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 3 TEDEEFLIQHLLQAPSPPR 19 0 Q9ULL5;Q9ULL5-2 Q9ULL5 PRR12 Proline-rich protein 12 1 0 TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR;TEDEEFLIQHLLQAPS(1)PPR ;; 144.63 3.45E-05 426964000 8362.5 6973.2 6626.8 5949.3 6914.2 6642.28 6347.5 6164.1 8647.3 8587.7 TRUE FALSE FALSE 7382.260427 7188.036027 6985.064853 6191.938169 6404.153241 6515.589576 6592.325201 6865.796228 8290.854634 8536.619978 0.864775572 0.842023663 0.818247137 0.725338387 0.750197766 0.763251684 0.772240678 0.804275726 0.971210462 1 13.05944924 -7.967440103 0.45795604 1.003345912 0.756456805 0.903203638 0.027139811 0.197341759 0.102012679 0.019617282 0.012009534 1.08E-08 7.967440103 -0.246889107 IDFTPVS(ph)PAPSPTR ddPTM_HeLa_CUDC101_4h_R1 2 IDFTPVSPAPSPTR 14 0 G1UD79;Q7Z309-3;Q7Z309-4;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 IDFT(0.02)PVS(0.975)PAPS(0.005)PTR;IDFT(0.007)PVS(0.991)PAPS(0.002)PTR ; 82.578 0.022547 11295700 1921.5 1435.77 1552.19 1243.74 1474.34 1664.34 1397.33 1143.15 1712.24 2035.96 TRUE FALSE FALSE 1696.264683 1480.004372 1636.106087 1294.465093 1365.580875 1632.595487 1451.225486 1273.281575 1641.660742 2023.850019 0.838137543 0.731281645 0.808412714 0.639605248 0.674744108 0.8066781 0.717061774 0.629138307 0.811157312 1 10.98288667 -7.966817328 0.445555359 1.00997076 0.687944899 0.447722888 0.078678103 0.30008209 0.148076145 0.038915525 0.023673991 1.08E-08 7.966817328 -0.322025861 GGAEQFMEETER ddPTM_HeLa_CUDC101_4h_R1 4 GGAEQFMEETER 12 0 Q99832-4;Q99832-3;Q99832;Q99832-2 Q99832-4 CCT7 T-complex protein 1 subunit eta 0 0 ;;; ;;; 220.5 1.74E-31 150533000 6090.3 6074.7 5917.9 5079.29 6081.7 5477.17 5716.87 5493.76 6131.8 6174.2 FALSE FALSE TRUE 5376.404266 6261.854307 6237.839575 5286.445401 5633.065107 5372.702108 5937.371591 6119.147432 5879.044609 6137.475584 0.875996033 1.020265453 1.01635265 0.861338726 0.917814667 0.875392828 0.967396368 0.997013731 0.957892953 1 12.58342966 -6.258717083 24.99594622 0.952228371 0.923192939 0.114543614 0.055145016 719.2802291 6604341.623 0.010137797 0.016323318 5.51E-07 6.258717083 -0.029035432 ASVSGPNS(ph)PSETR ddPTM_HeLa_CUDC101_4h_R1 2 ASVSGPNSPSETR 13 0 A0A087X0X0;C9J453;A0A087X255;O15344-2;O15344 A0A087X0X0 MID1 E3 ubiquitin-protein ligase Midline-1 1 0 ASVSGPNS(0.589)PS(0.41)ETR;ASVSGPNS(0.97)PS(0.025)ET(0.005)R ; 222.56 1.12E-32 65898000 3391.9 2439.06 2303.82 2845.9 2678.2 2788.8 2494.1 2927.3 2690.8 3397 TRUE FALSE FALSE 2994.306624 2514.204548 2428.371478 2961.968103 2480.634522 2735.608286 2590.298272 3260.531999 2579.884085 3376.794493 0.886730487 0.744553615 0.71913511 0.877153795 0.734612227 0.810119861 0.767087923 0.96557016 0.764003877 1 11.72143867 -7.965241181 1.08261786 0.975282235 0.800495414 0 0.098916638 0.246574015 0.609115881 0.018649361 0.015435048 1.08E-08 7.965241181 -0.174786821 EQSEVSVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 EQSEVSVSPR 10 0 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 EQSEVSVS(1)PR;EQSEVSVS(1)PR;EQSEVS(0.006)VS(0.994)PR ;; 162.31 4.81E-05 1214557000 8888.2 7514.9 6564.8 7078.5 7774.6 7790.9 6866.7 7554 7990.7 8472.2 TRUE FALSE FALSE 7846.33867 7746.425162 6919.712945 7367.191826 7201.083247 7642.301563 7131.550919 8413.916826 7661.319964 8421.806978 0.931669259 0.919805593 0.821642311 0.874775668 0.855052041 0.907442023 0.846795817 0.999063128 0.909700256 1 13.03991409 -7.964731615 0.813821273 0.988561719 0.883432355 0.142736341 0.052824574 0.332869861 0.479217754 0.01427016 0.010843732 1.08E-08 7.964731615 -0.105129364 GGALPPAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GGALPPAKR 9 1 E7ETY2;Q13428-6;Q13428-7;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 0 1 ; GGALPPAK(1)R;GGALPPAK(1)R 120.65 7.44E-05 0 1902.3 2324.27 2082.61 2018.59 2093.48 2127.45 1916.56 2171.63 1107.06 1265.97 FALSE TRUE FALSE 1679.315278 2395.878004 2195.202196 2100.916825 1939.048151 2086.872436 1990.482361 2418.839581 1061.426518 1258.439954 1.334442118 1.903847693 1.744383742 1.669461319 1.540834861 1.65830116 1.581706266 1.922093758 0.843446296 1 10.29742067 -7.721257513 1.359619061 1.095397188 1.700882092 0.778335038 0.160879703 0.127480774 0.488991985 0.033013679 0.032011665 1.90E-08 7.721257513 0.605484904 ASLT(ph)RT(ph)LS(ph)RAS(ph)LT(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 ASLTRTLSRASLTR 14 2 A8MUU9 A8MUU9 Putative uncharacterized protein ENSP00000383309 5 0 AS(0.028)LT(0.988)RT(0.988)LS(0.996)RAS(1)LT(1)R 42.243 0.0033461 0 991.46 879.22 820.57 1067.3 861.49 1027.5 960.19 689.7 876.31 799.62 TRUE FALSE FALSE 875.2425618 906.3077261 864.9324963 1110.829107 797.939599 1007.902149 997.2248499 768.2126601 840.1881309 794.8638247 1.101122651 1.140205024 1.088151793 1.397508696 1.003869561 1.268018644 1.254585778 0.966470779 1.057021473 1 9.63456391 -7.961416736 0.641508012 1.010665427 1.174894613 0.15243351 0.121315786 0.690916455 0.644414514 0.045425257 0.031533861 1.09E-08 7.961416736 0.164229186 S(ph)PLHVGETR ddPTM_HeLa_CUDC101_4h_R1 2 SPLHVGETR 9 0 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 S(1)PLHVGETR;S(1)PLHVGETR ; 89.171 0.029842 25199000 1430.54 1153.1 1129.48 1086.91 1276.8 1323 1108.67 1089.53 1509.19 1361.01 TRUE FALSE FALSE 1262.85427 1188.625644 1190.543105 1131.238888 1182.613008 1297.765979 1151.431773 1213.557691 1446.980549 1352.914652 0.933432325 0.878566614 0.879983895 0.836149484 0.874122404 0.959237138 0.851074953 0.89699501 1.069528331 1 10.40185512 -7.959275663 0.812168595 0.98935582 0.880825242 0.647148494 0.041226624 0.238861993 0.342584282 0.010545058 0.008037435 1.10E-08 7.959275663 -0.108530578 AGAPGALS(ph)PSYDGGLHGLQSK ddPTM_HeLa_CUDC101_4h_R1 2 AGAPGALSPSYDGGLHGLQSK 21 0 K7ENH8;A0A0A0MRB7;X6REB3;P15923-2;P15923;P15923-3 K7ENH8 TCF3 Transcription factor E2-alpha 1 0 AGAPGALS(0.998)PS(0.002)YDGGLHGLQSK;AGAPGALS(0.685)PS(0.314)Y(0.001)DGGLHGLQSK ; 136.92 3.83E-07 69399000 6840 5497.8 5087.2 4838.3 6423.7 5230.4 5440.8 4364.8 6627.9 6932.3 TRUE FALSE FALSE 6038.225569 5667.180702 5362.22942 5035.626787 5949.836449 5130.638834 5650.653479 4861.671189 6354.695157 6891.066371 0.876239648 0.822395315 0.778142182 0.730747103 0.863413023 0.744534816 0.81999696 0.705503463 0.922164265 1 12.75051154 -7.958447015 0.465602294 1.004884273 0.762100019 0.691333935 0.048438831 0.274135961 0.146047482 0.026721581 0.016573771 1.10E-08 7.958447015 -0.242784254 DTEEPLPVKESDQTLAALLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 DTEEPLPVKESDQTLAALLSPK 22 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 DTEEPLPVKES(0.001)DQT(0.006)LAALLS(0.993)PK;DTEEPLPVKES(0.008)DQT(0.039)LAALLS(0.953)PK;DTEEPLPVKESDQT(0.004)LAALLS(0.995)PK;DTEEPLPVKESDQTLAALLS(1)PK ;;; 129.08 1.76E-07 343954000 10788.7 11427.2 10675 10554.4 12984.7 10945.4 9871.1 10017.8 12031 7573.8 TRUE FALSE FALSE 9524.064941 11779.25849 11252.12279 10984.85405 12026.84455 10736.63473 10251.83163 11158.18586 11535.07709 7528.750701 1.265025941 1.564570133 1.494553776 1.45905403 1.597455545 1.426084507 1.361690942 1.482076682 1.532136944 1 12.87819477 -7.955167287 0.86012997 1.045246998 1.483266549 0 0.172281209 0.147087866 0.234769759 0.026384196 0.020568998 1.11E-08 7.955167287 0.438019551 S(ph)RSPES(ph)QVIGENTK ddPTM_HeLa_CUDC101_4h_R1 2 SRSPESQVIGENTK 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 S(0.932)RS(0.317)PES(0.75)QVIGENT(0.001)K;S(0.982)RS(0.036)PES(0.982)QVIGENTK ; 156.29 0.00088455 316240000 17458.1 14196.5 13408.4 12566.5 13084.3 13587.1 12894.5 10752.1 14492.9 18790.6 TRUE FALSE FALSE 15411.68798 14633.87734 14133.29866 13079.01619 12119.09726 13327.94871 13391.84518 11976.0756 13895.49653 18678.83268 0.82508839 0.783447103 0.756647854 0.700205222 0.648814488 0.713532207 0.716953003 0.641157604 0.743916752 1 14.18911668 -7.953971323 0.340128942 1.035970909 0.65221046 0.296871908 0.082259614 0.208477375 0.06634902 0.03204227 0.019101274 1.11E-08 7.953971323 -0.38376045 AKS(ph)S(ph)S(ph)GGS(ph)SLAK ddPTM_HeLa_CUDC101_4h_R1 1 AKSSSGGSSLAK 12 1 J3KS37;O94762-4;O94762 J3KS37 RECQL5 ATP-dependent DNA helicase Q5 4 0 AKS(0.999)S(1)S(1)GGS(1)S(0.001)LAK 80.371 0.017967 4457500 588.63 554.67 624.2 650.78 597.45 672.15 709.92 574.71 498.72 352.73 TRUE FALSE FALSE 519.6316837 571.7587253 657.9461401 677.3216213 553.3773038 659.3298586 737.3018522 640.1326633 478.1625505 350.6319463 1.481986137 1.630652116 1.876458056 1.9317168 1.578228423 1.880404412 2.102780023 1.825654137 1.363716443 1 8.453813637 -7.949859249 0.376283459 0.924988142 1.966974923 0.708964241 0.166703359 0.296292154 0.111021514 0.123906938 0.074512907 1.12E-08 7.949859249 1.041986781 LDSQPQET(ph)SPELPR ddPTM_HeLa_CUDC101_4h_R1 1 LDSQPQETSPELPR 14 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 LDSQPQET(0.5)S(0.5)PELPR 165.78 7.44E-05 443490000 5446.9 4893.2 4869.7 4973.1 5875.5 4839.6 4773.3 3961.4 4625.9 4570.4 TRUE FALSE FALSE 4808.422639 5043.953692 5132.970712 5175.924514 5442.076071 4747.292693 4957.40778 4412.349763 4435.218444 4543.215058 1.058374428 1.110216802 1.1298102 1.139264694 1.1978469 1.044919211 1.091167316 0.971195444 0.976229033 1 12.14949788 -7.94921967 1.059581187 1.012855623 1.101206551 0.328385311 0.058507417 0.408039203 0.967441946 0.015417964 0.012807408 1.12E-08 7.94921967 0.088350928 GGDISVCEWYQR ddPTM_HeLa_CUDC101_4h_R1 2 GGDISVCEWYQR 12 0 P14854 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 0 0 ; ; 193.52 2.72E-15 39854000 2076.5 1471.28 1841.2 1765.76 1816.02 2063.74 1875.52 1483.95 1930.74 977.05 FALSE FALSE TRUE 1833.095818 1516.608393 1940.740841 1837.775325 1682.055823 2024.377598 1947.859435 1652.87687 1851.15408 971.2384631 1.88737976 1.561520111 1.998212504 1.892197843 1.731866979 2.084326017 2.005541902 1.701823942 1.905972787 1 9.923681746 -9.487563782 0.478092597 0.715975573 1.903972079 0 0.320728637 0.576669064 0.154930344 0.337395447 0.038633627 3.25E-10 9.487563782 1.187996506 GGDLMAYDRR ddPTM_HeLa_CUDC101_4h_R1 2 GGDLMAYDRR 10 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ; ; 103.88 0.0011614 28070000 10915.7 6574.3 4029 8078.6 7187.5 6572.9 5919.5 5846.5 4753.7 2326.9 FALSE FALSE TRUE 9636.178193 6776.846391 4246.819927 8408.080227 6657.292445 6447.532884 6147.817098 6512.041928 4557.750474 2313.059495 4.16598804 2.929819317 1.836018458 3.635047107 2.878132818 2.787447922 2.657872446 2.815336977 1.970442387 1 11.17558666 -9.547962567 1.320511897 1.002088003 3.082357208 0.422877296 0.648583805 0.255061606 0.798066357 0.471314357 0.112188616 2.83E-10 9.547962567 2.080269206 TLPSTSSS(ph)GSKR ddPTM_HeLa_CUDC101_4h_R1 1 TLPSTSSSGSKR 12 1 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 0 TLPS(0.096)T(0.096)S(0.152)S(0.152)S(0.504)GSKR 110.15 0.00034187 0 1983.5 1599.6 1834.5 1650.6 1945.2 1773.1 1259.8 767.53 1725.3 1830.2 TRUE FALSE FALSE 1750.997137 1648.88178 1933.678619 1717.918603 1801.706471 1739.281072 1308.390908 854.9025127 1654.182404 1819.313889 0.962449167 0.906320668 1.062861462 0.944267294 0.990321946 0.956009341 0.719167218 0.469903802 0.909234197 1 10.82917876 -4.475657522 1.912432852 0.98079506 0.41750173 0.924375119 0.045258602 0.076629371 0.398272466 0.005380663 0.06523781 3.34E-05 4.475657522 -0.56329333 down ENQINS(ph)FGK ddPTM_HeLa_CUDC101_4h_R1 1 ENQINSFGK 9 0 F5H5B4;Q13043-2;Q13043 F5H5B4 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit 1 0 ENQINS(1)FGK 142.97 0.0014663 11556000 1835.8 1664.2 1664.6 1991.4 1890.8 1607.7 1857.6 1440.8 1611.5 1406.3 TRUE FALSE FALSE 1620.610307 1715.472029 1754.593311 2072.6179 1751.319451 1577.035801 1929.248254 1604.814848 1545.073288 1397.935265 1.159288522 1.227146973 1.255132019 1.482627952 1.252790093 1.128117904 1.380069809 1.147989387 1.105253817 1 10.44908184 -7.94837586 0.730542809 1.022377921 1.279512287 0.40800979 0.101916196 0.333024707 0.393025606 0.034301245 0.02533303 1.13E-08 7.94837586 0.257134366 GGDQQSGYGK(ac)VSR ddPTM_HeLa_CUDC101_4h_R1 2 GGDQQSGYGKVSR 13 1 Q14103-3;H0YA96;Q14103-4 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 1 ; GGDQQSGYGK(1)VSR;GGDQQSGYGK(1)VSR 205.02 3.77E-12 1880980 139.61 481.77 449.52 412.3 470.12 301.47 502.08 595.84 212.49 115.97 FALSE TRUE FALSE 123.2451274 496.6127627 473.8224109 429.1153761 435.4401842 295.719962 521.4453938 663.6680171 203.7310723 115.2802053 1.069091846 4.307875419 4.110180146 3.722368251 3.777232901 2.56522758 4.523286478 5.756998918 1.767268472 1 6.849000999 -7.265065285 24.5020618 1.032626618 4.037992526 0.729809787 0.784046246 77.79769444 525717.1696 0.128149657 0.149647468 5.43E-08 7.265065285 3.005365908 AGMSSNQS(ph)ISSPVLDAVPR ddPTM_HeLa_CUDC101_4h_R1 3 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AGMS(0.019)S(0.019)NQS(0.321)IS(0.321)S(0.321)PVLDAVPR;AGMS(0.017)S(0.004)NQS(0.456)IS(0.31)S(0.213)PVLDAVPR;AGMSSNQS(0.48)IS(0.046)S(0.474)PVLDAVPR ;; 161.2 2.97E-05 95016000 6651.7 5672.5 5485.5 5130.6 6101.4 5680.3 5280.4 5183.5 6411.7 6317 TRUE FALSE FALSE 5871.997809 5847.263001 5782.062723 5339.848044 5651.311878 5571.957742 5484.066797 5773.568688 6147.407012 6279.426203 0.935116939 0.931177915 0.920794757 0.850371972 0.899972656 0.887335492 0.87333884 0.91944208 0.978975915 1 12.61641702 -7.947075757 0.432588667 1.002840346 0.882739505 0.765507031 0.020954291 0.305564581 0.144170874 0.01471028 0.00906076 1.13E-08 7.947075757 -0.12010084 VTPFNYNPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 VTPFNYNPSPR 11 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 VTPFNYNPS(1)PR 113.69 0.0059322 16966000 1059 910.3 655.25 778.8 971.01 906.03 798.54 591.19 886.21 1088 TRUE FALSE FALSE 934.8656253 938.345264 690.674797 810.5628303 899.3805268 888.7489873 829.3399553 658.4886799 849.6800487 1081.528528 0.864392942 0.867610276 0.638609874 0.749460425 0.831582805 0.8217527 0.76682208 0.608850033 0.785628883 1 10.078856 -7.947057657 0.392762264 1.018921567 0.725371166 0.160706108 0.098758887 0.562614214 0.226263395 0.066266961 0.040148605 1.13E-08 7.947057657 -0.293550401 SAEPSANTTLVS(ph)ETEEEGSVPAFGAAAK ddPTM_HeLa_CUDC101_4h_R1 2 SAEPSANTTLVSETEEEGSVPAFGAAAK 28 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SAEPSANT(0.003)T(0.01)LVS(0.502)ET(0.474)EEEGS(0.012)VPAFGAAAK;SAEPSANT(0.011)T(0.011)LVS(0.455)ET(0.213)EEEGS(0.31)VPAFGAAAK ; 86.771 5.97E-07 108428000 10545.5 7648 7823.8 6521.9 6693.9 7800 7907.1 7153 8446.6 11791.1 TRUE FALSE FALSE 9309.372476 7883.625815 8246.778294 6787.891272 6200.104333 7651.227996 8212.079496 7967.268607 8098.427573 11720.96601 0.794249592 0.672608879 0.703592032 0.579123876 0.528975541 0.652781348 0.700631628 0.679745048 0.690935164 1 13.51680386 -7.946329923 0.611304037 0.982907548 0.626374849 0.253510307 0.104478667 0.183822874 0.157448022 0.026063574 0.017971748 1.13E-08 7.946329923 -0.356532699 SSS(ph)VTS(ph)IDKESR ddPTM_HeLa_CUDC101_4h_R1 1 SSSVTSIDKESR 12 1 H0Y332;Q5T5C0-3;Q5T5C0-2;Q5T5C0;Q5JRH0 H0Y332 STXBP5 Syntaxin-binding protein 5 2 0 S(0.392)S(0.03)S(0.578)VT(0.364)S(0.636)IDKESR 171.62 1.01E-05 63059000 8591.7 6821.5 6830.6 7328.7 8150.5 7299.7 7178.2 6870.9 7450.2 7899.2 TRUE FALSE FALSE 7584.59395 7031.66233 7199.882897 7627.596063 7549.253853 7160.470385 7455.065579 7653.055483 7143.099603 7852.215207 0.965917738 0.89550046 0.916923786 0.971394169 0.961417085 0.9119045 0.949421963 0.974636492 0.909692286 1 12.938884 -7.945194945 1.477858344 0.990839994 0.94104617 0 0.036242618 0.257772894 1.165827042 0.006135828 0.005427763 1.13E-08 7.945194945 -0.049793824 EDEGPPGYPEPLAPGHGSPFPS(ph)LSK ddPTM_HeLa_CUDC101_4h_R1 1 EDEGPPGYPEPLAPGHGSPFPSLSK 25 0 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 EDEGPPGY(0.001)PEPLAPGHGS(0.168)PFPS(0.682)LS(0.149)K 66.871 0.00095335 90146000 1868.9 1342.7 1389.4 1292.1 1452.6 1424.7 1530 1192 1629.9 1957.6 TRUE FALSE FALSE 1649.830375 1384.066996 1464.515167 1344.797423 1345.444592 1397.526221 1589.012613 1327.692462 1562.714832 1945.956108 0.847825071 0.711252936 0.752594142 0.691072845 0.691405416 0.718169447 0.816571662 0.682282841 0.803057595 1 10.92626345 -7.943194328 0.69863899 0.981945167 0.717962257 0.447435769 0.070024557 0.157162595 0.171025374 0.016535068 0.012050055 1.14E-08 7.943194328 -0.263982911 GGEIQPVSVK(ac)VGDK ddPTM_HeLa_CUDC101_4h_R1 2 GGEIQPVSVKVGDK 14 1 P61604;B8ZZL8;B8ZZ54 P61604 HSPE1 "10 kDa heat shock protein, mitochondrial" 0 1 ; GGEIQPVSVK(1)VGDK;GGEIQPVSVK(1)VGDK 194.86 8.70E-15 7840200 4122.9 3389 3230 3263.9 3868.3 3989 3387.3 3411.1 3162.7 3854.3 FALSE TRUE FALSE 3639.619912 3493.411073 3404.62357 3397.01595 3582.943216 3912.916471 3517.949296 3799.405836 3032.332167 3831.374452 0.949951501 0.911790564 0.888616765 0.886631153 0.935158717 1.021282707 0.918195112 0.991656097 0.791447614 1 11.90364632 -8.53295697 0.959184699 0.994220992 0.936313483 0 0.075547045 0.524937477 0.986808069 0.015677865 0.008625291 2.93E-09 8.53295697 -0.057907508 LRS(ph)PSNDSAHR ddPTM_HeLa_CUDC101_4h_R1 4 LRSPSNDSAHR 11 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 LRS(0.813)PS(0.023)NDS(0.163)AHR;LRS(0.967)PS(0.03)NDS(0.002)AHR;LRS(0.994)PS(0.006)NDSAHR;LRS(0.995)PS(0.005)NDSAHR ;;; 95.195 0.010372 32083200 1908.17 550.53 1554.77 1530.44 1770.56 1280.43 1519.16 683.78 2265.17 2143.46 TRUE FALSE FALSE 1684.497205 567.4911768 1638.825569 1592.857958 1639.949316 1256.007931 1577.75451 761.6187513 2171.798734 2130.710605 0.790580007 0.266338927 0.769145076 0.747571235 0.76967248 0.589478425 0.740482779 0.357448238 1.019283768 1 11.05711894 -7.941298605 1.444411978 0.944607158 0.628972326 0.435119112 0.173199743 0.260450669 1.126832504 0.038904795 0.034367177 1.14E-08 7.941298605 -0.315634831 AAES(ph)ETPGKSPEK ddPTM_HeLa_CUDC101_4h_R1 1 AAESETPGKSPEK 13 1 J3QSV6;O76021-2;O76021 J3QSV6 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AAES(0.435)ET(0.317)PGKS(0.248)PEK 148.72 0.0020157 160750000 7769.3 6067.8 7595.9 6500.1 5233.4 4919.3 3950.1 2673.9 6629 8257 TRUE FALSE FALSE 6858.594431 6254.741726 8006.55733 6765.202174 4847.342508 4825.472549 4102.45668 2978.285968 6355.749814 8207.886997 0.835610241 0.762040429 0.975471194 0.824231885 0.590571302 0.587906796 0.499818855 0.3628566 0.774346652 1 13.00279515 -4.465926051 0.367921741 0.952644484 6.14E-17 0.779827372 0.091809054 1.425642803 0.148215873 0.026636548 0.585365334 3.42E-05 4.465926051 -0.952644484 down SS(ph)DEENGPPSS(ph)PDLDR ddPTM_HeLa_CUDC101_4h_R1 1 SSDEENGPPSSPDLDR 16 0 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 2 0 S(0.146)S(0.854)DEENGPPS(0.002)S(0.998)PDLDR 253.34 2.87E-55 81685000 5748.8 4774 4582.5 4349.4 4970.5 5174.4 4268.9 4702.3 5851 5517.7 TRUE FALSE FALSE 5074.934379 4921.081281 4830.243811 4526.787332 4603.836118 5075.706941 4433.552903 5237.590825 5609.819304 5484.880475 0.925258882 0.897208481 0.88064705 0.825321053 0.83936854 0.925399736 0.80832261 0.954914305 1.02277877 1 12.42124447 -7.939874908 0.648359318 0.991957123 0.867253221 0.590084162 0.043793054 0.318931298 0.303439079 0.01578522 0.011200301 1.15E-08 7.939874908 -0.124703901 GGFDGEYQDDSLDLLR ddPTM_HeLa_CUDC101_4h_R1 2 GGFDGEYQDDSLDLLR 16 0 Q5F1R6;Q5F1R6-3;Q5F1R6-2 Q5F1R6 DNAJC21 DnaJ homolog subfamily C member 21 0 0 ; ; 247.73 5.41E-55 15854600 2423.6 2084.08 2044.28 1799.59 2004.35 2212.54 1804.21 1852.67 1978.68 1634.22 FALSE FALSE TRUE 2139.509282 2148.288035 2154.79996 1872.985059 1856.493094 2170.339486 1873.798984 2063.570464 1897.117973 1624.499587 1.31702667 1.322430644 1.326439217 1.15296124 1.142809213 1.336004948 1.153462272 1.270280695 1.167816839 1 10.66577966 -9.340527489 1.04735993 0.999008356 1.253948254 0.308565502 0.088475313 0.283222786 0.552738497 0.053422403 0.013803834 4.57E-10 9.340527489 0.254939898 SATDGNTST(ph)TPPTSAKK ddPTM_HeLa_CUDC101_4h_R1 1 SATDGNTSTTPPTSAKK 17 1 A0A669KAX4;Q13620-1;Q13620;A0A669KAU9;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 1 0 SATDGNTS(0.109)T(0.781)T(0.109)PPTSAKK 130.36 0.0025481 8948300 3600.2 3303.8 3449.7 3383.6 4264.1 3416.9 3019.2 3917.5 3808 2640.8 TRUE FALSE FALSE 3178.190014 3405.586162 3636.201217 3521.597833 3949.545838 3351.728325 3135.651555 4363.452365 3651.032628 2625.092404 1.210696434 1.297320489 1.385170751 1.341513856 1.504535929 1.27680394 1.194491878 1.662209055 1.390820614 1 11.35815249 -7.937947486 0.439844238 0.986210121 1.412653871 0.033487646 0.168271021 0.470635409 0.228817141 0.080226322 0.050035014 1.15E-08 7.937947486 0.42644375 RDS(ph)LTGSSDLYK ddPTM_HeLa_CUDC101_4h_R1 3 RDSLTGSSDLYK 12 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;E9PR38;Q14671-4;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 RDS(0.993)LT(0.007)GSSDLYK;RDS(0.998)LT(0.001)GSSDLYK;RDS(0.993)LT(0.007)GSSDLYK ;; 132.31 0.00079738 117363000 7558.7 5948.1 5850.4 6038.5 6836.8 6766.3 6152 4937.2 6136.9 7209 TRUE FALSE FALSE 6672.680644 6131.353911 6166.69032 6284.776131 6332.462885 6637.244101 6389.284701 5499.230891 5883.934384 7166.120547 0.931142673 0.855602954 0.860533992 0.877012337 0.88366681 0.926197663 0.89159604 0.76739302 0.821076668 1 12.8069766 -7.937945738 0.69257845 0.992582964 0.86693757 0 0.067029096 0.299469048 0.320812201 0.014956484 0.010907006 1.15E-08 7.937945738 -0.125645395 GRT(ph)SSTNEDEDLNPEQK ddPTM_HeLa_CUDC101_4h_R1 1 GRTSSTNEDEDLNPEQK 17 1 Q99081;Q99081-3;B4DGI9;Q99081-4;Q99081-2;B4DZP2;F5GY10 Q99081 TCF12 Transcription factor 12 1 0 GRT(0.445)S(0.092)S(0.445)T(0.019)NEDEDLNPEQK 115.57 0.00032963 0 1091.7 994.93 1083.5 1126.5 1484.5 1232.7 1195.7 1185.7 892.53 584.63 TRUE FALSE FALSE 963.7325809 1025.582614 1142.077287 1172.443539 1374.991393 1209.188301 1241.81855 1320.675295 855.7395356 581.1525948 1.658312446 1.76473894 1.965193475 2.017445245 2.365973077 2.080672636 2.136820107 2.272510365 1.472486819 1 9.182773215 -7.934931145 0.323298599 0.845695869 2.326390987 0.816403193 0.167331584 0.208455587 0.061789794 0.123237116 0.074879108 1.16E-08 7.934931145 1.480695117 T(ph)PDPAPEKPSESSAGPSTEEDFAVDFEK ddPTM_HeLa_CUDC101_4h_R1 1 TPDPAPEKPSESSAGPSTEEDFAVDFEK 28 1 M0QXY9;Q13487 M0QXY9 SNAPC2 snRNA-activating protein complex subunit 2 1 0 T(0.854)PDPAPEKPS(0.099)ES(0.04)S(0.006)AGPSTEEDFAVDFEK 52.773 0.001944 0 991.85 653.82 625.04 743.01 988.24 575.44 1019.6 795.37 862.48 995.44 TRUE FALSE FALSE 875.5868465 673.9634192 658.831553 773.3131594 915.3395041 564.4644407 1058.926314 885.9117058 826.9282093 989.5190786 0.884861005 0.681101996 0.665809854 0.781504042 0.92503472 0.570443211 1.070142392 0.895295225 0.835686979 1 9.950583713 -7.934026678 1.482362167 0.968709963 0.801640438 0.07042628 0.143572134 0.392432604 1.78704193 0.031274789 0.027813422 1.16E-08 7.934026678 -0.167069524 LEKPETQSS(ph)PITVQSSK ddPTM_HeLa_CUDC101_4h_R1 1 LEKPETQSSPITVQSSK 17 1 Q96CB8;A0A087WXN4;E9PGI3 Q96CB8 INTS12 Integrator complex subunit 12 1 0 LEKPETQS(0.104)S(0.895)PIT(0.001)VQSSK 110.98 0.00055657 57820000 3267.4 2547.4 2211.6 2454.7 2865.1 2665 2275.6 2522.5 2895.3 3317.8 TRUE FALSE FALSE 2884.400325 2625.882375 2331.165786 2554.813276 2653.747281 2614.169565 2363.370654 2809.651204 2775.954509 3298.065578 0.874573369 0.796188648 0.706828209 0.774639926 0.804637512 0.79263723 0.716592984 0.851908835 0.841691726 1 11.68740437 -7.93073052 0.76658077 0.981322514 0.770975308 0.404913104 0.061624069 0.176663065 0.227706929 0.014838836 0.01130263 1.17E-08 7.93073052 -0.210347206 GRLT(ph)PSPDIIVLS(ph)DNEASSPR ddPTM_HeLa_CUDC101_4h_R1 5 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 0 GRLT(0.845)PS(0.155)PDIIVLS(0.949)DNEAS(0.023)S(0.028)PR;GRLT(0.912)PS(0.088)PDIIVLS(0.988)DNEAS(0.007)S(0.006)PR;GRLT(0.993)PS(0.007)PDIIVLS(0.99)DNEAS(0.005)S(0.004)PR;GRLT(1)PSPDIIVLS(0.447)DNEAS(0.313)S(0.24)PR;GRLT(0.865)PS(0.135)PDIIVLS(0.978)DNEAS(0.018)S(0.005)PR ;;;; 154.71 6.17E-07 77530000 10797.7 8960.9 7689.74 7871.6 9833.3 8423 8650 9359.8 11552.7 10548.5 TRUE FALSE FALSE 9532.009974 9236.974708 8105.470605 8192.637872 9107.91705 8262.345309 8983.633398 10425.2818 11076.49282 10485.75705 0.909043565 0.880906802 0.772998131 0.781311052 0.868598901 0.787958873 0.856746285 0.994232629 1.056336968 1 13.3561434 -7.930098533 0.875486726 0.982883547 0.84206077 0.506257513 0.066121813 0.326275087 0.538206604 0.018683199 0.0148899 1.17E-08 7.930098533 -0.140822776 GGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEK ddPTM_HeLa_CUDC101_4h_R1 3 GGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEK 36 0 P08621;P08621-2;P08621-4 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 0 ;; ;; 107.31 2.71E-15 23305400 26579.2 23964.9 24860.2 23157.2 27917.7 25311.2 24614.6 24881.4 26999.1 27954.7 FALSE FALSE TRUE 23463.62647 24703.23016 26204.21761 24101.65071 25858.26689 24828.43103 25563.99337 27713.798 25886.18567 27788.4242 0.844366931 0.888975567 0.942990413 0.867327004 0.930540958 0.893481072 0.91995117 0.997314486 0.931545649 1 14.76219641 -9.579213218 1.383118345 0.999658948 0.901161783 0.104182059 0.045670685 0.334504774 1.153772666 0.030245286 0.007168782 2.64E-10 9.579213218 -0.098497164 EPTPS(ph)IASDISLPIATQELR ddPTM_HeLa_CUDC101_4h_R1 1 EPTPSIASDISLPIATQELR 20 0 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 0 EPT(0.029)PS(0.971)IASDISLPIATQELR 129.11 1.62E-06 0 242.68 252.31 325.82 340.7 162.57 253.33 322.25 241.65 278.64 129.96 TRUE FALSE FALSE 214.2334183 260.083372 343.4348148 354.5952186 150.577535 248.4981523 334.6792904 269.1584592 267.1543413 129.1869921 1.658320352 2.013231888 2.658431852 2.744821385 1.165578148 1.923553976 2.590657812 2.083479573 2.067966262 1 7.013317002 -7.929156249 0.854802224 1.117109451 2.180474785 0.104247547 0.532612062 0.323842272 0.51078727 0.139407878 0.110333033 1.18E-08 7.929156249 1.063365334 VSSPLSPLS(ph)PGIK ddPTM_HeLa_CUDC101_4h_R1 2 VSSPLSPLSPGIK 13 0 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 VSSPLS(0.136)PLS(0.864)PGIK;VSSPLS(0.019)PLS(0.98)PGIK ; 146.59 0.00049716 32076000 4910 4985 3909.1 4623.8 5352.7 4616.2 3979.9 3935.5 3887.5 4057.7 TRUE FALSE FALSE 4334.457243 5138.581941 4120.43777 4812.37855 4957.841985 4528.153676 4133.406076 4383.501412 3727.255605 4033.56462 1.074597199 1.273955527 1.021537563 1.193083291 1.229146537 1.122618354 1.024752661 1.086756213 0.924059971 1 11.97783965 -7.929020485 1.493876171 1.020194956 1.132717514 0.349974883 0.084353269 0.334251351 1.54590385 0.017968871 0.016031352 1.18E-08 7.929020485 0.112522558 S(ph)PGKCDQEKPAPSFACLK ddPTM_HeLa_CUDC101_4h_R1 1 SPGKCDQEKPAPSFACLK 18 2 Q01850;H3BUE0;H3BTR1;H3BU23 Q01850 CDR2 Cerebellar degeneration-related protein 2 1 0 S(1)PGKCDQEKPAPSFACLK 58.712 0.038087 14288000 1248 1497.5 1470.8 1373.5 1544.9 1086.6 1209.3 1616.3 1191.1 723.61 TRUE FALSE FALSE 1101.711332 1543.6362 1550.315897 1429.517267 1430.935805 1065.874915 1255.943106 1800.293059 1142.002354 719.3059355 1.531631087 2.146007872 2.155294181 1.987356417 1.98932851 1.48181026 1.746048578 2.50281969 1.587644836 1 9.490461699 -7.928867207 0.957788691 1.105399676 1.974960796 0.417899221 0.311832605 0.220162914 0.430345227 0.079226308 0.064876718 1.18E-08 7.928867207 0.869561119 GGGGNFGPGPGSNFR ddPTM_HeLa_CUDC101_4h_R1 2 GGGGNFGPGPGSNFR 15 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 159.44 0.00039114 20739400 1573.34 1633.69 1400.11 1690.55 1475.14 2005.79 1540.47 1465.08 1374.78 1567.72 FALSE FALSE TRUE 1388.91547 1684.022053 1475.804182 1759.497936 1366.321861 1967.532898 1599.886444 1631.858785 1318.110987 1558.395132 0.891247311 1.080613009 0.947002562 1.129044811 0.876749313 1.262537888 1.026624385 1.047140582 0.84581308 1 10.60584536 -6.398069134 0.975238168 0.952612236 1.076788993 0.225676579 0.106858904 0.602093013 1.139002514 0.018134192 0.035580673 4.00E-07 6.398069134 0.124176756 S(ph)SAGGGGEPGEGAYSQPGYHVR ddPTM_HeLa_CUDC101_4h_R1 1 SSAGGGGEPGEGAYSQPGYHVR 22 0 Q9UPS8;E7ESJ3 Q9UPS8 ANKRD26 Ankyrin repeat domain-containing protein 26 1 0 S(0.787)S(0.213)AGGGGEPGEGAYSQPGYHVR 76.98 0.00064342 0 1433.4 1169.2 1154.2 1091.8 1483.2 1130.1 970.55 1203.4 1725.7 1366.8 TRUE FALSE FALSE 1265.379025 1205.221666 1216.599543 1136.328323 1373.787291 1108.545225 1007.984439 1340.390192 1654.565916 1358.670213 0.9313364 0.887059755 0.895434029 0.836353305 1.011126378 0.815904562 0.741890438 0.986545653 1.217783315 1 10.4079796 -7.928663242 0.358122543 1.013249608 0.856702459 0.343992037 0.101697506 1.159149236 0.404276374 0.072577893 0.044402015 1.18E-08 7.928663242 -0.156547149 GHYEVT(ph)GSDDETGKLQGSGVSLASK ddPTM_HeLa_CUDC101_4h_R1 4 GHYEVTGSDDETGKLQGSGVSLASK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHY(0.016)EVT(0.436)GS(0.436)DDET(0.078)GKLQGS(0.025)GVS(0.009)LAS(0.001)K;GHY(0.047)EVT(0.485)GS(0.433)DDET(0.016)GKLQGS(0.013)GVS(0.006)LAS(0.001)K;GHY(0.123)EVT(0.484)GS(0.392)DDET(0.001)GKLQGSGVSLASK;GHY(0.083)EVT(0.467)GS(0.4)DDET(0.05)GKLQGSGVSLASK ;;; 88.836 2.78E-05 700835600 10503.19 8680.2 7732.2 8341.8 8655.63 8978.09 9400.91 7973.42 9845.83 10040.71 TRUE FALSE FALSE 9272.02199 8947.626673 8150.226121 8682.01466 8017.121419 8806.847892 9763.506248 8881.081903 9439.98072 9980.98741 0.928968409 0.896467083 0.816575133 0.869855286 0.803239308 0.882362389 0.978210456 0.88979993 0.945796276 1 13.28496683 -7.926884185 0.918694156 0.985972821 0.87567841 0.385443818 0.047490812 0.313881237 0.566912781 0.014188072 0.011496202 1.18E-08 7.926884185 -0.110294411 DKDQPPS(ph)PSPPPQSEALSSTSR ddPTM_HeLa_CUDC101_4h_R1 1 DKDQPPSPSPPPQSEALSSTSR 22 1 H3BU99;H3BPL8;H3BR21;H3BUX9;Q7L1V2 H3BU99 MON1B Vacuolar fusion protein MON1 homolog B 1 0 DKDQPPS(1)PSPPPQSEALSSTSR 108.13 1.20E-05 11723000 2734.7 1912.6 2193.7 1918.7 2033.7 2228.1 1963.3 1945.8 2351.5 2828.9 TRUE FALSE FALSE 2414.142612 1971.524939 2312.298058 1996.952879 1883.678003 2185.602705 2039.025139 2167.302007 2254.570175 2812.073577 0.858491979 0.701092943 0.822275091 0.710135359 0.66985374 0.777221024 0.725096653 0.770713122 0.801746509 1 11.45741863 -7.92422155 0.641509804 0.987124543 0.728844056 0.350271511 0.073450747 0.179940744 0.168070258 0.018322515 0.013112981 1.19E-08 7.92422155 -0.258280488 (ac)MEIPMGTQGCFS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 MEIPMGTQGCFSK 13 0 A0A087WWX9;K7EK61;Q7Z692-2;Q7Z692-3;Q7Z692 A0A087WWX9 CEACAM19 Carcinoembryonic antigen-related cell adhesion molecule 19 1 0 MEIPMGT(0.243)QGCFS(0.757)K 47.429 0.038001 17778000 504.9 448.27 392.26 236.93 298.73 459.19 392.78 418.45 495.99 553.66 TRUE FALSE FALSE 445.7163874 462.0806674 413.4667621 246.5930295 276.6932831 450.4317158 407.9296562 466.0846566 475.5450823 550.3668057 0.809853325 0.839586731 0.751256722 0.448052148 0.502743407 0.818420935 0.741195966 0.84686186 0.86405117 1 9.104249649 -7.92237288 0.651259233 0.975730868 0.683824603 0.330755327 0.129885277 0.463789699 0.445016698 0.053347507 0.038459746 1.20E-08 7.92237288 -0.291906266 SGSMEEDVDTS(ph)PGGDYYTSPS(ph)SPTSSSR ddPTM_HeLa_CUDC101_4h_R1 2 SGSMEEDVDTSPGGDYYTSPSSPTSSSR 28 0 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 2 0 SGSMEEDVDT(0.127)S(0.873)PGGDYYTS(0.006)PS(0.521)S(0.411)PT(0.048)S(0.011)S(0.003)SR;SGSMEEDVDT(0.127)S(0.873)PGGDYYTS(0.001)PS(0.593)S(0.351)PT(0.044)S(0.009)S(0.002)SR ; 185.17 8.29E-22 27181000 8107.2 7035.1 5913.7 5599.1 7427.6 6994.8 6077.6 5695.3 7888.8 8149.1 TRUE FALSE FALSE 7156.886306 7251.843092 6233.41251 5827.455499 6879.680746 6861.385844 6312.015068 6343.629931 7563.620325 8100.628791 0.883497626 0.895219776 0.769497365 0.719383106 0.849277374 0.847018919 0.779200631 0.783103398 0.933707805 1 12.98381818 -7.920023588 0.516809494 0.996203786 0.789226352 0.661977412 0.047072246 0.307145533 0.196773891 0.025117164 0.016669374 1.20E-08 7.920023588 -0.206977433 TPLALAGS(ph)PTPK ddPTM_HeLa_CUDC101_4h_R1 2 TPLALAGSPTPK 12 0 B9EGQ5;A0A669KBG4;M0QXA7;A0A669KBH9;A0A2R8YFV2;A0A669KAV7;O95785-4;O95785-3;O95785 B9EGQ5 WIZ Protein Wiz 1 0 T(0.123)PLALAGS(0.843)PT(0.034)PK;TPLALAGS(0.951)PT(0.049)PK ; 123.1 0.0028509 183935000 8309.1 6556.4 6310.9 6111.3 5796.3 5366.6 3942.1 2295.5 7077.5 7810.2 TRUE FALSE FALSE 7335.119894 6758.394913 6652.086343 6360.545229 5368.718497 5264.241046 4094.148118 2556.810441 6785.762454 7763.744583 0.9447915 0.870507117 0.856814166 0.819262556 0.691511479 0.678054383 0.527341938 0.329326965 0.874032161 1 12.92253694 -4.460508694 0.411150983 0.988554526 1.60E-15 0.940027602 0.047792093 0.448138937 0.057319216 0.008599246 0.210517494 3.46E-05 4.460508694 -0.988554526 down SVSMLSLNT(ph)PNSNR ddPTM_HeLa_CUDC101_4h_R1 1 SVSMLSLNTPNSNR 14 0 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3;H7C3G1 Q9H8V3-2 ECT2 Protein ECT2 1 0 SVS(0.001)MLS(0.032)LNT(0.953)PNS(0.014)NR 148.85 0.0012981 13177000 1352.9 1117.3 1012.1 852.01 1125.5 1148.6 948.36 933.31 768.06 1424.6 TRUE FALSE FALSE 1194.315113 1151.722689 1066.817187 886.7586505 1042.474107 1126.692369 984.9385629 1039.554238 736.4002417 1416.126416 0.843367583 0.813290873 0.753334713 0.626186081 0.736144807 0.795615671 0.695515988 0.734082937 0.520010243 1 10.46773434 -7.919659165 0.518230155 0.995178349 0.713122714 0 0.153374948 0.232103811 0.149405195 0.025859215 0.017183067 1.20E-08 7.919659165 -0.282055635 GTS(ph)PRPPEGGLGYSQLGDDDLK ddPTM_HeLa_CUDC101_4h_R1 3 GTSPRPPEGGLGYSQLGDDDLK 22 1 P21127;P21127-8;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-9;P21127-2;P21127-3;P21127-6;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 GT(0.496)S(0.5)PRPPEGGLGY(0.002)S(0.001)QLGDDDLK;GT(0.374)S(0.626)PRPPEGGLGYSQLGDDDLK;GT(0.121)S(0.418)PRPPEGGLGY(0.052)S(0.409)QLGDDDLK ;; 81.904 0.00049511 114922000 8351.4 6241.3 6544.9 5231.7 6085.8 5965.2 6271.2 5112.5 6779.3 9208.8 TRUE FALSE FALSE 7372.461552 6433.587055 6898.737091 5445.071339 5636.862659 5851.423749 6513.082285 5694.486335 6499.854385 9154.025648 0.805379167 0.702815057 0.75362877 0.594828062 0.615779644 0.639218632 0.711499239 0.622074544 0.710054203 1 13.16019062 -7.916920954 0.477862407 1.002123131 0.630250349 0.291385544 0.095880085 0.181114115 0.101621914 0.026672029 0.017333013 1.21E-08 7.916920954 -0.371872782 VSLPSS(ph)PVPASPASSSGADQR ddPTM_HeLa_CUDC101_4h_R1 2 VSLPSSPVPASPASSSGADQR 21 0 Q5T6S3-2 Q5T6S3-2 1 0 VSLPS(0.162)S(0.837)PVPAS(0.001)PASSSGADQR;VSLPS(0.172)S(0.826)PVPAS(0.002)PASSSGADQR ; 192.72 2.19E-14 49525000 1696.43 1293.47 1214.19 1077.79 1538.08 957.79 963.33 921.3 1860.17 1972.89 TRUE FALSE FALSE 1497.577047 1333.320278 1279.832784 1121.746935 1424.618903 939.5217515 1000.485961 1026.177068 1783.493005 1961.155163 0.763619868 0.679864757 0.652591293 0.571982756 0.726418251 0.479065486 0.510151354 0.523251341 0.909409433 1 10.93748797 -7.916616527 0.188276322 1.199685812 0.371914285 0.863875524 0.060665297 0.724473824 0.1013681 0.229370026 0.155286042 1.21E-08 7.916616527 -0.827771528 AEGAAT(ph)EEEGTPK ddPTM_HeLa_CUDC101_4h_R1 4 AEGAATEEEGTPK 13 0 P80723;P80723-2;U3KQP0 P80723 BASP1 Brain acid soluble protein 1 1 0 AEGAAT(1)EEEGTPK;AEGAAT(1)EEEGTPK;AEGAAT(1)EEEGTPK;AEGAAT(0.902)EEEGT(0.098)PK ;;; 200.76 4.99E-16 61682400 11653.6 10107.2 9913 8830.2 8832.7 9865 9310.7 9076.7 9582.8 11622.3 TRUE FALSE FALSE 10287.58267 10418.59085 10448.92677 9190.333723 8181.129318 9676.841561 9669.816818 10109.95484 9187.792928 11553.17004 0.890455402 0.901794989 0.904420754 0.79548156 0.70812853 0.837591893 0.836983857 0.875080588 0.795261638 1 13.49600114 -7.916603535 0.428783706 1.002406944 0.81049566 0 0.078768004 0.509743698 0.238773209 0.038914529 0.024641814 1.21E-08 7.916603535 -0.191911284 VSAEAEVAPVSPEVTQEVVEEHCAS(ph)PEDK ddPTM_HeLa_CUDC101_4h_R1 2 VSAEAEVAPVSPEVTQEVVEEHCASPEDK 29 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VSAEAEVAPVSPEVT(0.005)QEVVEEHCAS(0.995)PEDK;VSAEAEVAPVS(0.041)PEVT(0.101)QEVVEEHCAS(0.858)PEDK ; 121.2 1.02E-13 194388000 6487.8 4662.7 4751.5 5199 5014.9 5099.5 5646 4810 5739.1 6434.9 TRUE FALSE FALSE 5727.309919 4806.35226 5008.380463 5411.037692 4644.960818 5002.235534 5863.768111 5357.550957 5502.531869 6396.624929 0.89536435 0.751388789 0.782972352 0.84592074 0.726158071 0.7820117 0.916697192 0.837559028 0.860224248 1 12.64309518 -7.916358091 1.060226218 0.97699689 0.807843511 0.303701344 0.065928632 0.212449479 0.504351562 0.015186704 0.012849082 1.21E-08 7.916358091 -0.16915338 GGHDILVR ddPTM_HeLa_CUDC101_4h_R1 1 GGHDILVR 8 0 Q9Y678;H0Y8X7 Q9Y678 COPG1 Coatomer subunit gamma-1 0 0 93.374 0.0015601 0 1243.2 961.47 1220.3 1242.2 1266.7 954.51 1278.4 959.92 1177.5 1107.8 FALSE FALSE TRUE 1097.473981 991.0917511 1286.273109 1292.862285 1173.258065 936.3043121 1327.708316 1069.193413 1128.962952 1101.210756 0.996606666 0.90000188 1.168053528 1.174037102 1.06542554 0.850249879 1.205680483 0.970925326 1.025201529 1 10.10487489 -6.763322295 24.99999889 0.990973148 1.072659473 0.157069936 0.103199244 77.64219961 1030877.893 0.015798398 0.021362094 1.72E-07 6.763322295 0.081686325 IQSSLSSASPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 IQSSLSSASPSK 12 0 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 1 0 IQSSLS(0.001)S(0.007)AS(0.216)PS(0.776)K 169.17 1.04E-06 37975000 2201.5 1865.6 1618.7 1475.7 1869.8 1887.3 1859.5 1510.9 1897.6 2213.5 TRUE FALSE FALSE 1943.443507 1923.076925 1706.211818 1535.885425 1731.868579 1851.302897 1931.221538 1682.894749 1819.380125 2200.334004 0.883249318 0.873993185 0.7754331 0.698023765 0.787093494 0.84137358 0.87769472 0.764836041 0.826865431 1 11.10350682 -7.914848973 0.67688831 0.985029994 0.7951867 0.214105206 0.07007661 0.276938303 0.284762042 0.020675146 0.015217357 1.22E-08 7.914848973 -0.189843295 SQASMVINS(ph)DTDDEEEVSAALTLAHLK ddPTM_HeLa_CUDC101_4h_R1 1 SQASMVINSDTDDEEEVSAALTLAHLK 27 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.015)QAS(0.013)MVINS(0.419)DT(0.419)DDEEEVS(0.111)AALT(0.022)LAHLK 42.708 0.039251 3305900 577.8 577.37 703.2 616.19 543.26 462.75 624.23 598.65 760.8 393.87 TRUE FALSE FALSE 510.0711599 595.1580853 741.2171191 641.3208916 503.1847921 453.9238147 648.3067602 666.7978962 729.439502 391.5272437 1.302773097 1.520093671 1.893143149 1.637998126 1.28518462 1.159367125 1.655840738 1.703068961 1.863061929 1 8.612968888 -7.913598786 1.023557222 1.065908223 1.541059891 0 0.323415502 0.298023351 0.661201498 0.05921236 0.049764261 1.22E-08 7.913598786 0.475151667 SQSFNTDTTTSGISSMS(ph)SSPSR ddPTM_HeLa_CUDC101_4h_R1 1 SQSFNTDTTTSGISSMSSSPSR 22 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 SQSFNTDTTTSGIS(0.003)S(0.002)MS(0.462)S(0.462)S(0.07)PS(0.001)R 150.13 3.81E-07 11697000 2558.8 1800.7 2071.9 2120.9 2021.6 1814.2 2169.4 1579.1 2452.6 2556.9 TRUE FALSE FALSE 2258.861343 1856.177433 2183.913181 2207.399469 1872.470596 1779.597158 2253.074485 1758.858361 2351.50279 2541.691445 0.888723668 0.730292198 0.859236154 0.86847657 0.73670256 0.700162548 0.886446893 0.692003101 0.925172406 1 11.31157319 -7.912211055 0.396864886 1.01703837 0.756871466 0.499442903 0.071264077 0.528085577 0.218278312 0.054735092 0.034355866 1.22E-08 7.912211055 -0.260166904 QLS(ph)GQSTSSDTTYK ddPTM_HeLa_CUDC101_4h_R1 1 QLSGQSTSSDTTYK 14 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 QLS(0.833)GQS(0.143)T(0.016)S(0.004)S(0.004)DTTYK 135.23 0.00067318 21808000 1382.6 1190.3 1116.5 1290.4 1554.6 1409.5 957.3 514.14 1313.8 1462 TRUE FALSE FALSE 1220.533724 1226.971732 1176.861367 1343.02809 1439.920255 1382.616136 994.2233817 572.6676194 1259.644608 1453.303959 0.839833757 0.844263669 0.809783363 0.924120575 0.990790843 0.951360607 0.684112484 0.394045317 0.86674546 1 10.50512076 -4.443707216 2.513209627 0.915093022 0.369599672 0.858910114 0.064156945 0.114246397 1.143514276 0.011324212 0.110316439 3.60E-05 4.443707216 -0.54549335 down GGK(ac)GLGK(ac)GGAK ddPTM_HeLa_CUDC101_4h_R1 2 GGKGLGKGGAK 11 2 P62805 P62805 HIST1H4A Histone H4 0 2 ; GGK(1)GLGK(1)GGAK;GGK(1)GLGK(1)GGAK 116.52 0.0046045 161466000 15168.4 11275.2 5117.4 11144.7 6533.4 9315 9063.6 5136.7 2464.1 4153.3 FALSE TRUE FALSE 13390.38315 11622.57555 5394.062123 11599.22904 6051.444098 9137.331895 9413.186088 5721.441165 2362.528755 4128.595987 3.243326106 2.815139962 1.306512466 2.809485131 1.465738987 2.213181412 2.279996909 1.385807956 0.572235395 1 12.01143553 -6.758675111 24.99703362 2.145632195 1.961389772 0 0.856225871 483.2770263 4370213.259 0.151496276 0.208774462 1.74E-07 6.758675111 -0.184242423 GGK(ac)GLGK(ac)GGAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 22 GGKGLGKGGAKR 12 3 P62805 P62805 HIST1H4A Histone H4 0 3 ;;;;;;;;;;;;;;;;;;;;; GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R;GGK(1)GLGK(1)GGAK(1)R 200.71 6.85E-15 32771980340 28398.36 36387.366 19012.672 45420.85 33049.304 46321.383 41478.711 24099.25 994.73 2785.82 FALSE TRUE FALSE 25069.54729 37508.41762 20040.55456 47273.30859 30611.32269 45437.8798 43078.55878 26842.61121 953.7268084 2769.249819 9.052829803 13.54461319 7.236817142 17.07079956 11.05401271 16.40801039 15.55603922 9.69309848 0.344398978 1 11.43527949 -8.294449768 0.417313497 4.19E-16 14.25068483 0.737937824 2.888465497 0.428969587 0.167586405 2.582973538 1.118312442 5.08E-09 8.294449768 14.25068483 YSPTSPTYSPT(ph)TPK ddPTM_HeLa_CUDC101_4h_R1 2 YSPTSPTYSPTTPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPTSPT(0.002)Y(0.007)S(0.07)PT(0.908)T(0.014)PK;YSPTSPTYS(0.001)PT(0.5)T(0.5)PK ; 214.61 2.16E-23 25460000 6697.5 6002.4 5650.9 6786.4 6424.3 6845.4 6119.7 6118.6 5668.3 5218.7 TRUE FALSE FALSE 5912.429203 6187.326829 5956.404747 7063.178725 5950.392188 6714.8354 6355.738879 6815.116692 5434.650275 5187.65894 1.139710469 1.192701159 1.148187422 1.361534906 1.14702841 1.294386442 1.225165138 1.313717183 1.047611329 1 12.34086792 -7.908069381 0.300290649 0.957299885 1.299242107 0.687812753 0.061022505 0.582585764 0.156279526 0.079274988 0.049612235 1.24E-08 7.908069381 0.341942222 GGKGLGK(ac)GGAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 GGKGLGKGGAKR 12 3 P62805 P62805 HIST1H4A Histone H4 0 2 GGKGLGK(1)GGAK(1)R 86.463 0.017037 4287900 5602.4 1830.8 1297 1271.7 4466.6 1548.2 2845.2 888.72 657.26 749.35 FALSE TRUE FALSE 4945.695165 1887.204778 1367.119743 1323.565423 4137.107817 1518.670664 2954.940317 989.8882925 630.1674646 744.8928329 6.639472078 2.53352522 1.835324067 1.776853481 5.553963784 2.038777388 3.966933479 1.328900278 0.845984062 1 9.540889071 GGLGLILK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GGLGLILKR 9 1 B1AJY5;B1AJY7;O75832 B1AJY5 PSMD10 26S proteasome non-ATPase regulatory subunit 10 0 1 ; GGLGLILK(1)R;GGLGLILK(1)R 116.54 0.0021402 876980 760.18 300.96 548.36 393.47 776.6 650.68 718.77 721.63 782.54 188.92 FALSE TRUE FALSE 671.0728528 310.2322209 578.0060003 409.5174073 719.3117652 638.2693631 746.4931997 803.7774423 750.28337 187.7962954 3.573408364 1.651961345 3.077834943 2.180646889 3.830276649 3.398732449 3.975015577 4.28004951 3.995197926 1 7.553024794 -9.52320774 0.278470027 5.27E-47 3.698746674 0 1.104029138 3.152095192 0.291964174 3.899238323 0.53005813 3.00E-10 9.52320774 3.698746674 VS(ph)PSPTTYR ddPTM_HeLa_CUDC101_4h_R1 2 VSPSPTTYR 9 0 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 VS(0.932)PS(0.022)PT(0.046)TYR;VS(0.967)PS(0.02)PT(0.013)TYR ; 128.03 0.0037629 41574000 3768.8 3577.3 2994.8 3794.4 3314.9 3465.5 3436 3298.2 3278.5 3181.8 TRUE FALSE FALSE 3327.026977 3687.512373 3156.707947 3949.152033 3070.366431 3399.401361 3568.527671 3673.653756 3143.358842 3162.874512 1.051899772 1.165873751 0.998050329 1.248595864 0.970751897 1.074782243 1.128254585 1.161492099 0.993829768 1 11.6270206 -7.906190724 0.847668554 1.008419656 1.104323092 0.227376561 0.077658756 0.563113195 0.873976831 0.021628793 0.017332472 1.24E-08 7.906190724 0.095903436 NAS(ph)ASFQELEDK ddPTM_HeLa_CUDC101_4h_R1 2 NASASFQELEDK 12 0 Q99543-2;Q99543;F2Z3H0;F2Z3N9;H7C3L7 Q99543-2 DNAJC2 "DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed" 1 0 NAS(1)ASFQELEDK;NAS(0.5)AS(0.5)FQELEDK ; 150.12 0.00062376 38917000 6804.2 4766.7 5076.3 4790.5 4798.1 4808.1 4145.7 3392.9 5680 7743.8 TRUE FALSE FALSE 6006.62199 4913.556377 5350.740133 4985.877296 4444.153722 4716.393503 4305.601038 3779.134021 5445.867996 7697.739533 0.780309851 0.638311592 0.695105376 0.647706677 0.577332307 0.612698505 0.559333168 0.49094075 0.707463272 1 12.91021914 -7.899204178 0.220980657 1.144659402 0.441075823 0.4753253 0.097389932 0.3484842 0.060841413 0.095775489 0.063333954 1.26E-08 7.899204178 -0.703583579 TSSESIYSRPGS(ph)SIPGS(ph)PGHTIYAK ddPTM_HeLa_CUDC101_4h_R1 1 TSSESIYSRPGSSIPGSPGHTIYAK 25 1 O14639-3;O14639-5;H0Y7N6;F6XFR5;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639;A0A494C1P1;A0A494C1G0 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 2 0 T(0.051)S(0.025)S(0.028)ES(0.051)IY(0.001)S(0.025)RPGS(0.608)S(0.211)IPGS(0.556)PGHT(0.442)IY(0.002)AK 62.706 0.0044406 10338000 2758.9 2386.5 1851.2 2298.4 2433.9 2763.6 2096.3 1858.4 2923.6 2638.5 TRUE FALSE FALSE 2435.505924 2460.025236 1951.281472 2392.138687 2254.356046 2710.888934 2177.154993 2069.952744 2803.087971 2622.806085 0.928587873 0.937936377 0.743967113 0.912053202 0.859520671 1.03358344 0.830086146 0.789213033 1.068736262 1 11.35689543 -7.898009871 0.760037414 0.988790193 0.871900437 0.364026089 0.080062228 0.538234362 0.682625293 0.024757554 0.019246981 1.26E-08 7.898009871 -0.116889756 FVKDFQDYMEPEEGCQGS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 2 FVKDFQDYMEPEEGCQGSPQR 21 1 O43237;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 FVKDFQDY(0.001)MEPEEGCQGS(0.999)PQR;FVKDFQDY(0.001)MEPEEGCQGS(0.999)PQR ; 60.472 0.009936 19201800 4799.8 5068.4 4706.9 5196.2 6529.7 5278 5746.1 6304.7 5771.8 2476.07 TRUE FALSE FALSE 4237.17472 5224.551396 4961.369252 5408.123496 6048.01704 5177.330944 5967.729002 7022.401564 5533.883961 2461.342226 1.721489469 2.122643224 2.015716953 2.197225335 2.457202813 2.103458385 2.424583197 2.853078085 2.248319597 1 11.26522955 -7.897556083 0.142235906 7.08E-14 3.34737485 0.17716166 0.424536402 1.117412494 0.112502965 1.396733502 1.026472585 1.27E-08 7.897556083 3.34737485 GGLSPANDTGAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 GGLSPANDTGAKK 13 1 K7EN42;B7Z8J4;P30419 K7EN42 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 0 1 ; GGLSPANDTGAK(1)K;GGLSPANDTGAK(1)K 213.63 2.23E-16 3290500 2488.4 2820.4 2529.9 2274.6 2583.6 2378.2 2253.7 2497.7 2504.9 2115.51 FALSE TRUE FALSE 2196.713524 2907.293181 2666.674047 2367.36802 2393.012975 2332.839797 2340.625964 2782.028072 2401.646962 2102.926852 1.044598162 1.382498482 1.268077415 1.125749104 1.137943991 1.109329977 1.113032515 1.322931451 1.142049691 1 11.03818295 -7.485074389 20.9148733 1.019675114 1.198568726 0.296141965 0.096823758 44.34222359 24532.60156 0.015746899 0.017639593 3.27E-08 7.485074389 0.178893612 GGLTSPIFCSTK(ac)PK ddPTM_HeLa_CUDC101_4h_R1 2 GGLTSPIFCSTKPK 14 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 0 1 ; GGLTSPIFCSTK(1)PK;GGLTSPIFCSTK(1)PK 237.53 6.79E-35 1435640 220.09 366.012 439.7 448.96 409.44 608.02 473.37 555.92 58.236 0 FALSE TRUE FALSE 194.2913838 377.2883959 463.471512 467.2705294 379.2364269 596.4230315 491.6280395 619.2036857 55.83548743 0 0 SVLPTAIPAVLPAAS(ph)PCS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 2 SVLPTAIPAVLPAASPCSSPK 21 0 O94806;O94806-2 O94806 PRKD3 Serine/threonine-protein kinase D3 2 0 SVLPTAIPAVLPAAS(0.961)PCS(0.567)S(0.472)PK;SVLPTAIPAVLPAAS(0.735)PCS(0.663)S(0.602)PK ; 76.351 0.0089574 17568200 5739.5 5185.2 4456.9 4264.6 5085.6 5072.4 4214.7 4236.9 5168.2 5687.4 TRUE FALSE FALSE 5066.724511 5344.949866 4697.853495 4438.528821 4710.44542 4975.652421 4377.262391 4719.21157 4955.164609 5653.571092 0.896198956 0.945411277 0.830953289 0.785084109 0.833180541 0.880090184 0.774247342 0.834731092 0.876466313 1 12.46494672 -7.891922723 0.31207436 1.022920807 0.798348327 0.349295075 0.053343502 0.584170399 0.167210576 0.052234224 0.033109325 1.28E-08 7.891922723 -0.22457248 GGLWDDDDAPRPSQFEEDLALMEEMEAEHR ddPTM_HeLa_CUDC101_4h_R1 2 GGLWDDDDAPRPSQFEEDLALMEEMEAEHR 30 1 M0R2J2;A0A2R8Y7K6;M0QZR8;A0A087WYJ2;M0R2B7;P28340 M0R2J2 POLD1 DNA polymerase;DNA polymerase delta catalytic subunit 0 0 ; ; 172.98 5.00E-19 11252400 2754.02 2618.96 2372.2 1922.05 2863.8 2311.06 2029.56 1932.92 2593.75 2683.6 FALSE FALSE TRUE 2431.19795 2699.647053 2500.448308 2000.439507 2652.543179 2266.980381 2107.840809 2152.9558 2486.834527 2667.637828 0.911367325 1.01199909 0.937326755 0.749891715 0.994341568 0.849808155 0.790152541 0.807064504 0.932223445 1 11.3813471 -1 0.156465642 1.009601957 0.175212909 0.393417508 0.069545619 44.08604708 0.439693191 0.128438596 8.470519138 0.1 1 -0.834389048 HGGSPQPLATTPLSQEPVNPPSEAS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 3 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HGGSPQPLATTPLSQEPVNPPS(0.12)EAS(0.652)PT(0.228)R;HGGSPQPLAT(0.003)T(0.001)PLS(0.035)QEPVNPPS(0.199)EAS(0.563)PT(0.199)R;HGGSPQPLATTPLSQEPVNPPS(0.106)EAS(0.671)PT(0.223)R ;; 129.53 1.80E-14 91134000 5635.9 3912.47 3763.1 4092.99 4943.6 5209.7 4318.4 2932.17 5737 5788.4 TRUE FALSE FALSE 4975.268345 4033.008563 3966.544569 4259.919824 4578.920477 5110.333652 4484.962135 3265.956381 5500.518432 5753.970339 0.864667013 0.70090882 0.689357841 0.740344418 0.795784512 0.888140423 0.779455206 0.567600489 0.955951822 1 12.49034207 -7.891037463 1.000574103 0.971355832 0.745793162 0.561553301 0.08278471 0.24874326 0.52813634 0.023122384 0.019578356 1.29E-08 7.891037463 -0.22556267 GGNFGFGDSR ddPTM_HeLa_CUDC101_4h_R1 4 GGNFGFGDSR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;; ;;; 166.07 0.00010043 339974000 12362.1 12052.9 12023.4 12289.5 11864.1 11454.7 11020.9 11815.8 12407.2 11949.8 FALSE FALSE TRUE 10913.03338 12424.23556 12673.42137 12790.71893 10988.90898 11236.22068 11445.9798 13160.86291 11895.76996 11878.72206 0.918704329 1.045923585 1.066901078 1.076775672 0.925091851 0.945911574 0.963569966 1.107935925 1.001435163 1 13.53609202 -7.858504273 0.005515343 1.05E-07 1.964037086 0 0.065508806 13795.56125 50.65896147 9074.53669 8962.732973 1.39E-08 7.858504273 1.964036982 GYYSPGIVS(ph)TR ddPTM_HeLa_CUDC101_4h_R1 1 GYYSPGIVSTR 11 0 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 GYYS(0.163)PGIVS(0.804)T(0.033)R 84.31 0.032877 35440000 1631.6 1533.1 1586 1720.1 1816.7 1886.8 1315.4 836.32 1514.5 1275.8 TRUE FALSE FALSE 1440.346321 1580.332994 1671.743957 1790.253113 1682.68566 1850.812434 1366.135419 931.5232883 1452.071669 1268.211485 1.135730388 1.246111562 1.318190205 1.411636099 1.326817869 1.459387851 1.077214199 0.73451731 1.144975965 1 10.30857963 -7.889994729 1.122699969 1.032530352 1.24059055 0.07031419 0.197848064 0.57138542 1.514981088 0.050600572 0.043954997 1.29E-08 7.889994729 0.208060198 RSS(ph)S(ph)DS(ph)WEPTSAGS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 RSSSDSWEPTSAGSK 15 1 A0A3B3IRS8;B1AL16;Q8IX21;Q8IX21-2 A0A3B3IRS8 FAM178A Protein FAM178A 4 0 RS(0.437)S(0.905)S(0.648)DS(0.738)WEPT(0.213)S(0.209)AGS(0.851)K 48.216 0.0033479 0 187.22 177.16 0 178.66 124.87 260.27 154.37 117.86 160.47 193.49 TRUE FALSE FALSE 165.2743554 182.6180896 0 185.946527 115.6585889 255.3057834 160.3241026 131.276706 153.8553587 192.3391129 0.859286252 0.949458937 0 0.966763984 0.601326413 1.327373198 0.833549143 0.682527355 0.799917169 1 7.58750836 -7.888970047 1.303937943 0.961990784 0.770914952 0.020461269 0.32316044 0.861235982 3.058376404 0.073679131 0.065701089 1.29E-08 7.888970047 -0.191075832 EVDGLLTSEPMGS(ph)PVSSK ddPTM_HeLa_CUDC101_4h_R1 13 EVDGLLTSEPMGSPVSSK 18 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 1 0 EVDGLLTSEPMGS(0.999)PVSSK;EVDGLLTS(0.001)EPMGS(0.999)PVSSK;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTS(0.001)EPMGS(0.998)PVS(0.001)SK;EVDGLLTSEPMGS(0.998)PVS(0.002)SK;EVDGLLT(0.001)S(0.012)EPMGS(0.944)PVS(0.035)S(0.008)K;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTS(0.001)EPMGS(0.996)PVS(0.002)S(0.001)K;EVDGLLTSEPMGS(1)PVSSK;EVDGLLTSEPMGS(0.806)PVS(0.15)S(0.045)K;EVDGLLTS(0.013)EPMGS(0.986)PVSSK;EVDGLLTSEPMGS(0.976)PVS(0.02)S(0.003)K;EVDGLLTSEPMGS(1)PVSSK ;;;;;;;;;;;; 317.01 2.01E-145 1097179000 48190.5 42635.26 38430.43 36736.8 44722.7 40460.16 38807 40027.39 45048.3 45509.9 TRUE FALSE FALSE 42541.68264 43948.80183 40508.09529 38235.08549 41423.59552 39688.44986 40303.79899 44583.94628 43191.39001 45239.20509 0.940372019 0.971475996 0.895420139 0.845175892 0.915657016 0.877302105 0.890904226 0.985515687 0.954733619 1 15.46528596 -7.888442544 0.580143369 0.993915135 0.900816036 0.310568779 0.04005275 0.473065778 0.370822243 0.017117965 0.012160112 1.29E-08 7.888442544 -0.093099099 TRS(ph)YDNLTTACDNTVPLASR ddPTM_HeLa_CUDC101_4h_R1 4 TRSYDNLTTACDNTVPLASR 20 1 G5E953;Q13615-3;Q13615-2;Q13615 G5E953 MTMR3 Myotubularin-related protein 3 1 0 T(0.025)RS(0.975)YDNLTTACDNTVPLASR;T(0.056)RS(0.944)YDNLTTACDNTVPLASR;T(0.019)RS(0.978)Y(0.003)DNLT(0.001)TACDNTVPLASR;T(0.234)RS(0.754)Y(0.005)DNLT(0.002)T(0.001)ACDNT(0.004)VPLASR ;;; 242.22 1.66E-44 40639000 5853.15 6537.78 5921.92 5913.17 7144.35 6080.34 5351.94 6716.7 6937.9 3919.84 TRUE FALSE FALSE 5167.05263 6739.201253 6242.076908 6154.334632 6617.325534 5964.367645 5558.366119 7481.301978 6651.916825 3896.524617 1.326066979 1.729541557 1.601960085 1.579441999 1.6982635 1.530689071 1.426493264 1.91999351 1.707140973 1 11.92797222 -7.887850578 0.780848701 1.049195291 1.638352333 0 0.248777545 0.189022788 0.251846352 0.043761382 0.034580956 1.29E-08 7.887850578 0.589157042 TAQAS(ph)PNTELDFGGAAGSDVDQEEIVDER ddPTM_HeLa_CUDC101_4h_R1 2 TAQASPNTELDFGGAAGSDVDQEEIVDER 29 0 D6RA38;Q9UBS8-2;Q9UBS8 D6RA38 RNF14 E3 ubiquitin-protein ligase RNF14 1 0 T(0.255)AQAS(0.712)PNT(0.033)ELDFGGAAGSDVDQEEIVDER;T(0.324)AQAS(0.675)PNT(0.001)ELDFGGAAGSDVDQEEIVDER ; 177.95 3.02E-19 11723500 1803.48 1367.13 1268.74 1296.02 1490.01 1480.38 1436.9 1295.67 1644.66 1820.37 TRUE FALSE FALSE 1592.078808 1409.249655 1337.331922 1348.877297 1380.094931 1452.144218 1492.321714 1443.163836 1576.866419 1809.542358 0.879824007 0.778787879 0.739044276 0.74542455 0.762676223 0.802492526 0.824695652 0.797529734 0.871417246 1 10.82140916 -7.885641434 0.883855803 0.977226282 0.776582334 0.628357623 0.045845868 0.138209497 0.231838373 0.011093547 0.009122052 1.30E-08 7.885641434 -0.200643948 SLLGDSAPTLHLNKGT(ph)PS(ph)QSPVVGR ddPTM_HeLa_CUDC101_4h_R1 2 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 0 SLLGDS(0.027)APT(0.25)LHLNKGT(0.794)PS(0.693)QS(0.235)PVVGR;S(0.001)LLGDS(0.001)APT(0.052)LHLNKGT(0.924)PS(0.511)QS(0.511)PVVGR ; 65.915 0.0030256 473850000 5222.7 4091.1 3813.4 3235.1 5222.4 4216.4 4305.4 4696.2 4548 5036 TRUE FALSE FALSE 4610.503023 4217.141942 4019.563939 3367.041361 4837.153956 4135.979195 4471.46072 5230.796425 4360.529515 5006.045648 0.920987012 0.842409806 0.802941927 0.672595018 0.966262455 0.82619686 0.893212135 1.044895871 0.871052687 1 12.28945573 -7.884020676 1.245145287 0.979742841 0.859784248 0.035652733 0.100177012 0.42944714 1.393334527 0.022646156 0.020098274 1.31E-08 7.884020676 -0.119958593 KPNIFYSGPAS(ph)PARPR ddPTM_HeLa_CUDC101_4h_R1 2 KPNIFYSGPASPARPR 16 2 Q6PL18;Q6PL18-2 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 0 KPNIFYS(0.004)GPAS(0.996)PARPR;KPNIFYSGPAS(1)PARPR ; 114.3 0.00094081 292380000 6292.7 6789.9 5982.3 5777.1 6631.2 5743.1 5579.5 5560.4 6730.7 4887.8 TRUE FALSE FALSE 5555.079245 6999.088771 6305.721233 6012.715109 6142.029587 5633.559936 5794.703184 6193.37346 6453.257697 4858.727148 1.14331986 1.440519 1.297813407 1.237508287 1.264123175 1.159472381 1.192638114 1.274690525 1.328178657 1 12.2463627 -7.883911237 1.525612857 1.040307442 1.257935636 0 0.1192494 0.180804965 0.874305977 0.018699677 0.017057032 1.31E-08 7.883911237 0.217628194 T(ph)SSSSPANS(ph)DVEIDGIGR ddPTM_HeLa_CUDC101_4h_R1 1 TSSSSPANSDVEIDGIGR 18 0 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 2 0 T(0.918)S(0.005)S(0.049)S(0.02)S(0.008)PANS(1)DVEIDGIGR 190.79 4.03E-11 17141000 2330.8 1676 1853.9 1619 1701.6 2137 2111.4 1302.3 2393.7 2327.6 TRUE FALSE FALSE 2057.587157 1727.635573 1954.127442 1685.029818 1576.076358 2096.240285 2192.837405 1450.548568 2295.030673 2313.755332 0.889284675 0.746680321 0.844569612 0.728266206 0.681176759 0.905990472 0.947739536 0.626923922 0.991907243 1 11.1760206 -7.881654944 0.87642656 0.979613751 0.788094033 0.433303504 0.094853979 0.356475855 0.588476633 0.02722446 0.022388907 1.31E-08 7.881654944 -0.191519718 RKVTGTEGSSSTLVDYTSTSSTGGS(ph)PVRK ddPTM_HeLa_CUDC101_4h_R1 1 RKVTGTEGSSSTLVDYTSTSSTGGSPVRK 29 3 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 RKVTGTEGSSSTLVDY(0.004)T(0.018)S(0.018)T(0.023)S(0.023)S(0.066)T(0.023)GGS(0.823)PVRK 48.958 0.018108 10187000 940.7 700.66 1066.2 974.45 1107.1 900.69 890.85 855.94 1187.5 633.44 TRUE FALSE FALSE 830.432572 722.2465041 1123.841997 1014.192283 1025.431439 883.5108389 925.2103829 953.3767498 1138.550747 629.6722707 1.318833004 1.147019708 1.784804651 1.610666898 1.628516113 1.403128072 1.469352274 1.514084063 1.808164025 1 9.298457326 -7.880960772 0.586051299 1.031182415 1.549456464 0 0.283393269 0.335721073 0.267919572 0.067401944 0.048362649 1.32E-08 7.880960772 0.518274049 EGQPSPADEKGNDS(ph)DGEGESDDPEK ddPTM_HeLa_CUDC101_4h_R1 2 EGQPSPADEKGNDSDGEGESDDPEK 25 1 O75351;K7EKZ3 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 1 0 EGQPSPADEKGNDS(0.998)DGEGES(0.002)DDPEK;EGQPSPADEKGNDS(0.873)DGEGES(0.127)DDPEK ; 84.159 2.16E-05 213753000 13628.6 9974 10534.1 10270.5 10114 10419.9 9562.9 9321.1 11563.7 14232.9 TRUE FALSE FALSE 12031.07617 10281.28712 11103.60531 10689.37538 9367.91037 10221.15777 9931.744256 10382.17635 11087.03939 14148.24208 0.850358377 0.726683008 0.784804589 0.755526752 0.662125395 0.722433056 0.701977263 0.733813875 0.783633707 1 13.78833519 -7.878082487 0.472331103 1.003617831 0.698694332 0.369025788 0.071771856 0.161019892 0.089157746 0.019206329 0.012905764 1.32E-08 7.878082487 -0.304923499 DSLLDGHFVLATLSDTDSHSQDLGS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 DSLLDGHFVLATLSDTDSHSQDLGSPER 28 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 1 0 DS(0.002)LLDGHFVLAT(0.043)LS(0.043)DT(0.082)DS(0.015)HS(0.255)QDLGS(0.561)PER;DSLLDGHFVLATLS(0.001)DT(0.001)DS(0.002)HS(0.028)QDLGS(0.968)PER ; 81.386 1.08E-06 22882500 4424.4 2965 2929.8 3084.79 4431.3 3804 3595.7 2688.06 3946.7 4477.5 TRUE FALSE FALSE 3905.778539 3056.348136 3088.19385 3210.60107 4104.411827 3731.445038 3734.387353 2994.057885 3784.015356 4450.867631 0.877531947 0.68668592 0.693840866 0.721342744 0.92215994 0.838363516 0.839024582 0.67269084 0.850174768 1 12.11987088 -7.87563377 1.350598726 0.96735885 0.776837267 0.302498158 0.088351788 0.232180086 0.883737825 0.019977314 0.018016502 1.33E-08 7.87563377 -0.190521583 GS(ph)LASLDSLR ddPTM_HeLa_CUDC101_4h_R1 4 GSLASLDSLR 10 0 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-19;O60716-4;O60716-6;O60716-11;O60716-13;O60716-21;O60716-24;O60716-9;O60716-17;O60716-16;O60716-10;O60716-23;O60716-15;O60716-18;O60716-12;O60716-22;O60716-20;O60716-14;O60716-27;O60716-29;O60716-25;O60716-26;O60716-31;O60716-32;O60716-30;O60716-28;E9PKY0 O60716-5 CTNND1 Catenin delta-1 1 0 GS(1)LASLDSLR;GS(0.999)LAS(0.001)LDSLR;GS(0.996)LAS(0.004)LDSLR;GS(0.994)LAS(0.006)LDSLR ;;; 156.58 9.36E-05 27915800 6897.1 6271.2 4843.35 5367.7 6879.6 6215.7 5521.17 5050.13 6237.1 6503 TRUE FALSE FALSE 6088.632393 6464.408239 5105.196151 5586.618007 6372.105614 6097.145879 5734.123376 5625.016386 5980.004098 6464.319867 0.941882908 1.000013671 0.789749928 0.864223634 0.985734887 0.943199904 0.887042024 0.870163683 0.925078619 1 12.65828287 -7.875068958 0.653699654 0.992323149 0.900963705 0.115109921 0.060823257 0.635136395 0.613877836 0.022412279 0.016805699 1.33E-08 7.875068958 -0.091359443 IFSLSGTLET(ph)VR ddPTM_HeLa_CUDC101_4h_R1 1 IFSLSGTLETVR 12 0 B4DEM9;Q9Y2S7 B4DEM9 POLDIP2 Polymerase delta-interacting protein 2 1 0 IFS(0.002)LS(0.003)GT(0.169)LET(0.826)VR 158.06 0.00075244 18244000 1185.5 762.95 823.96 793.97 912.41 744.45 961.14 1127.2 523.42 1231.4 TRUE FALSE FALSE 1046.537487 786.4555852 868.5057699 826.3515284 845.1033321 730.2508566 998.2114918 1255.515892 501.8444061 1224.075578 0.854961496 0.642489401 0.709519727 0.675082114 0.690401269 0.59657334 0.815481911 1.025684945 0.409978285 1 10.25747692 -7.874295259 1.190604164 0.964220724 0.730673631 0 0.210070384 0.288377362 0.857161372 0.029051196 0.025716437 1.34E-08 7.874295259 -0.233547092 GGPGSTLSFVGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GGPGSTLSFVGKR 13 1 Q9BQ61 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 0 1 ; GGPGSTLSFVGK(1)R;GGPGSTLSFVGK(1)R 196.44 2.80E-11 4103800 965.78 1252.03 869.79 1186.86 1385.48 1141.84 939.5 1087.16 725.28 810.66 FALSE TRUE FALSE 852.5727324 1290.60356 916.8134784 1235.265281 1283.275901 1120.061304 975.7368297 1210.9179 695.3836514 805.8381583 1.057994988 1.601566701 1.137714154 1.532894997 1.592473486 1.389933317 1.210834731 1.502681261 0.862932146 1 9.654346312 -7.349358425 6.988988178 1.025988256 1.413760115 0.639655958 0.153342552 0.120548477 8.279039156 0.02374533 0.027087215 4.47E-08 7.349358425 0.387771858 GGPPFAFVEFEDPRDAEDAVYGR ddPTM_HeLa_CUDC101_4h_R1 2 GGPPFAFVEFEDPRDAEDAVYGR 23 1 J3KTL2;Q07955;Q07955-3;Q07955-2 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 0 ; ; 98.175 0.0001292 124778000 2749.11 2238.66 2184.88 2395.54 2584.98 2562.8 2364.6 2323.97 2442.77 2272.61 FALSE FALSE TRUE 2426.863493 2307.630461 2303.001222 2493.240476 2394.291175 2513.91886 2455.803414 2588.521351 2342.077987 2259.092415 1.074264814 1.02148564 1.019436481 1.10364696 1.059846494 1.112800363 1.087075233 1.145823577 1.036734032 1 11.14152757 -1 0.106430069 0.974248485 1.419934502 0.61720558 0.027594309 57.90304483 0.434591941 0.19428305 3.797502742 0.1 1 0.445686017 GPS(ph)PSS(ph)PTPPAAAAPAEQAPR ddPTM_HeLa_CUDC101_4h_R1 1 GPSPSSPTPPAAAAPAEQAPR 21 0 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 2 0 GPS(0.999)PS(0.185)S(0.692)PT(0.124)PPAAAAPAEQAPR 200.9 5.10E-18 69872000 2972.8 2573 2362 2098.2 2510.2 2707.3 2510.6 2705.2 3003.9 2769.1 TRUE FALSE FALSE 2624.33289 2652.27108 2489.696865 2183.773665 2325.027547 2655.662763 2607.434683 3013.149033 2880.077971 2752.62927 0.953391334 0.963540971 0.904479543 0.793341003 0.844656988 0.964773132 0.9472524 1.09464397 1.046300714 1 11.4265946 -7.87215576 0.972667867 0.989361546 0.923020213 0.15242685 0.077471695 0.791517391 1.591104722 0.021329275 0.018135543 1.34E-08 7.87215576 -0.066341333 EPSVPASCAVS(ph)ATYERSPS(ph)PAHLPDDPK ddPTM_HeLa_CUDC101_4h_R1 1 EPSVPASCAVSATYERSPSPAHLPDDPK 28 1 Q92615;H0Y4V9;H0Y641 Q92615 LARP4B La-related protein 4B 2 0 EPS(0.002)VPAS(0.011)CAVS(0.501)AT(0.333)Y(0.306)ERS(0.325)PS(0.522)PAHLPDDPK 51.264 0.013893 34994000 3648.6 3598 3246.4 3247.4 3425.1 3208.6 3265.7 2742.7 3611.3 3093.8 TRUE FALSE FALSE 3220.916639 3708.850115 3421.910204 3379.843008 3172.437197 3147.401301 3391.659143 3054.917882 3462.440685 3075.39794 1.047317031 1.205974052 1.112672334 1.098993715 1.031553399 1.023412697 1.102835864 0.99334068 1.125851273 1 11.58655738 -7.872028647 2.159337612 1.015170278 1.081075981 0 0.066435688 0.331093848 3.168760542 0.01203 0.011359832 1.34E-08 7.872028647 0.065905704 SASAPTLAET(ph)EKETAEHLDLAGASSR ddPTM_HeLa_CUDC101_4h_R1 1 SASAPTLAETEKETAEHLDLAGASSR 26 1 Q86W92-2 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.023)AS(0.217)APT(0.15)LAET(0.435)EKET(0.173)AEHLDLAGAS(0.001)S(0.001)R 53.589 0.019358 4464400 459.28 210.31 343.39 242.11 299.13 403.46 226.57 258.96 342.21 525.72 TRUE FALSE FALSE 405.4438946 216.7894018 361.9547021 251.9842923 277.0637759 395.7646727 235.3088808 288.4389596 328.103959 522.5929941 0.775831095 0.414834114 0.692613001 0.48218077 0.53017124 0.757309564 0.450271786 0.551938053 0.627838419 1 9.029543974 -7.870934489 0.872011063 0.959890754 0.553950673 0.22022046 0.151612243 0.192665963 0.314925375 0.031021481 0.025649691 1.35E-08 7.870934489 -0.405940081 VVVTT(ph)PLHR ddPTM_HeLa_CUDC101_4h_R1 2 VVVTTPLHR 9 0 P10244-2;P10244 P10244-2 MYBL2 Myb-related protein B 1 0 VVVT(0.146)T(0.854)PLHR;VVVT(0.018)T(0.982)PLHR ; 99.568 0.0021522 8181100 2985.9 2938.7 3036.6 3229.6 3891 3475.6 1961.02 755.38 2978.1 2555.1 TRUE FALSE FALSE 2635.897328 3029.237864 3200.767781 3361.317048 3603.968682 3409.308721 2036.657198 841.3694058 2855.341457 2539.902152 1.037794833 1.192659277 1.260193342 1.32340415 1.41893997 1.342299237 0.801864433 0.331260559 1.124193487 1 11.3105572 -4.424750195 3.291831827 1.115518758 0.332232006 0.740972292 0.155715248 0.137884817 2.502838541 0.027324442 0.212884366 3.76E-05 4.424750195 -0.783286751 down GGQVQIVTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 GGQVQIVTKK 10 1 A0A669KB77;P11137-3;P11137;P11137-2 A0A669KB77 MAP2 Microtubule-associated protein 2 0 1 GGQVQIVTK(1)K 141.95 0.00063922 843480 480.32 599.08 512.83 539.49 541.75 517.47 452.35 443.41 609.19 723.82 FALSE TRUE FALSE 424.0176177 617.5369447 540.555141 561.4927341 501.7861818 507.6001219 469.797291 493.8860021 584.0789304 719.5146864 0.589310581 0.858268714 0.751277425 0.78037703 0.697395329 0.705475693 0.652936347 0.686415457 0.811767906 1 9.490880325 -9.478946074 1.158565972 1.003733403 0.706766364 0.361226518 0.088598328 0.234535651 0.551719491 0.057026771 0.013265708 3.32E-10 9.478946074 -0.296967039 ESES(ph)ESDETPPAAPQLIK ddPTM_HeLa_CUDC101_4h_R1 3 ESESESDETPPAAPQLIK 18 0 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 ES(0.026)ES(0.956)ES(0.018)DETPPAAPQLIK;ES(0.034)ES(0.932)ES(0.034)DETPPAAPQLIK;ES(0.011)ES(0.969)ES(0.02)DETPPAAPQLIK ;; 292.81 3.34E-105 20096100 7871.2 6246.3 6579.2 5384 5769.6 5186.1 4971.9 3883.92 8364 9236.1 TRUE FALSE FALSE 6948.549868 6438.741099 6934.891453 5603.582792 5343.988103 5087.183783 5163.667848 4326.049753 8019.23238 9181.163266 0.75682674 0.701299052 0.755339084 0.610334729 0.582060023 0.554089241 0.562419783 0.471187542 0.873444045 1 13.16446124 -7.868153318 0.088582238 1.576848475 1.99E-17 0.899337112 0.049062776 1.708607472 0.103792345 0.97712156 0.804880987 1.35E-08 7.868153318 -1.576848475 PFSAPKPQTSPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 PFSAPKPQTSPSPK 14 1 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 0 PFS(0.001)APKPQT(0.24)S(0.24)PS(0.519)PK;PFSAPKPQT(0.005)S(0.014)PS(0.98)PK ; 63.894 0.035141 223860000 4516.8 3772.7 3803.4 3799.3 2934.8 2605.4 2638.4 3065.1 3402.9 5354.8 TRUE FALSE FALSE 3987.347551 3888.932415 4009.023309 3954.251876 2718.305651 2555.706336 2740.163972 3414.018594 3262.631022 5322.949411 0.749086126 0.73059729 0.753158258 0.742868581 0.510676589 0.480129744 0.51478302 0.641377239 0.612936695 1 12.37801014 -7.865929467 0.177800493 1.193278097 0.385345278 0.130271312 0.138491518 1.211956388 0.163438809 0.378742365 0.269553502 1.36E-08 7.865929467 -0.807932819 SSASVVFT(ph)T(ph)Y(ph)TQK ddPTM_HeLa_CUDC101_4h_R1 1 SSASVVFTTYTQK 13 0 Q7L5D6-2;Q7L5D6 Q7L5D6-2 GET4 Golgi to ER traffic protein 4 homolog 3 0 SSAS(0.003)VVFT(0.886)T(0.983)Y(0.93)T(0.197)QK 81.904 0.0018214 0 1441.3 1386.6 949.17 1031.4 1190.6 1342.1 1219.9 1192 1232.4 1406.3 TRUE FALSE FALSE 1272.352999 1429.319502 1000.485001 1073.46495 1102.77181 1316.501679 1266.951952 1327.692462 1181.59995 1397.935265 0.910165893 1.022450423 0.715687648 0.767893176 0.788857566 0.941747241 0.906302304 0.949752463 0.845246543 1 10.44908184 -7.861878406 0.779583741 0.982506732 0.859968879 0 0.09694935 0.60853529 0.807692388 0.028974582 0.023302869 1.37E-08 7.861878406 -0.122537853 ERQAQAQES(ph)EEEEESR ddPTM_HeLa_CUDC101_4h_R1 1 ERQAQAQESEEEEESR 16 1 H0YLQ7;Q9NVM6 H0YLQ7 DNAJC17 DnaJ homolog subfamily C member 17 1 0 ERQAQAQES(0.583)EEEEES(0.417)R 62.556 0.029173 4180800 568.33 700.09 634.57 764.7 775.5 671.75 671.05 903.06 786.25 234.6 TRUE FALSE FALSE 501.7112189 721.6589431 668.8767737 795.8877713 718.29291 658.937488 696.9326233 1005.8607 753.8404422 233.2045888 2.151377988 3.094531488 2.868197308 3.412830663 3.080097668 2.825576853 2.988503043 4.31321144 3.23252834 1 7.865452367 -7.860678538 0.395258012 0.840797646 3.506741882 0.053401791 0.791953107 0.304804581 0.126932923 0.320011216 0.211057273 1.38E-08 7.860678538 2.665944236 SS(ph)PPGHYYQK ddPTM_HeLa_CUDC101_4h_R1 1 SSPPGHYYQK 10 0 D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;D6RDK6;D6RBN5;Q9NX40-3;Q9NX40-2;Q9NX40-4;Q9NX40 D6RI08 OCIAD1 OCIA domain-containing protein 1 1 0 S(0.222)S(0.778)PPGHYYQK 76.165 0.033452 4939100 3745.4 2787.5 2229.2 2075.5 3104.8 3126.1 2722.2 2259.7 3373.9 4092.4 TRUE FALSE FALSE 3306.36989 2873.379571 2349.717295 2160.147861 2875.76509 3066.474851 2827.196166 2516.935114 3234.826414 4068.058223 0.81276366 0.706327052 0.577601688 0.531002199 0.706913454 0.753793255 0.694974361 0.618706758 0.79517702 1 11.99012461 -7.859992857 0.833053529 0.965967159 0.651038085 0.537786987 0.086275642 0.187924689 0.281914687 0.023187083 0.019055315 1.38E-08 7.859992857 -0.314929074 (ac)AQESPKNS(ph)AAEIPVTSNGEVDDSR ddPTM_HeLa_CUDC101_4h_R1 1 AQESPKNSAAEIPVTSNGEVDDSR 24 1 P53367-3;P53367-2;P53367 P53367-3 ARFIP1 Arfaptin-1 1 0 AQES(0.361)PKNS(0.639)AAEIPVTSNGEVDDSR 49.593 1.05E-08 13428000 516.04 289.97 466.14 321.64 425.22 487.45 284.72 404.93 463.79 523.87 TRUE FALSE FALSE 455.5505735 298.903632 491.3409384 334.7578694 393.8523678 478.1527034 295.7017458 451.0255944 444.6723799 520.7539979 0.874790353 0.573982405 0.943518322 0.642833028 0.75631175 0.918193053 0.567833847 0.866101069 0.853901039 1 9.0244582 -7.858879995 1.253417238 0.968475985 0.754863217 0.189369441 0.133248773 0.297609847 0.978272031 0.027764416 0.024971541 1.38E-08 7.858879995 -0.213612768 NSSS(ph)AGSGSGDPSEGLPR ddPTM_HeLa_CUDC101_4h_R1 1 NSSSAGSGSGDPSEGLPR 18 0 H0YLQ1;H0YLF1;H0YN92;H0YNS2;H0YM86;H0YLB2;H0YKR8;H0YL29;H0YMN6;H0YL64;H0YMF7;H0YLH4;H0YM56;H0YN15;H0YNT0;H0YMZ4;H0YN21;H0YNK2;H0YN03;H0YLX7;Q8TEB1-2;Q8TEB1 H0YLQ1 DCAF11 DDB1- and CUL4-associated factor 11 1 0 NS(0.001)S(0.034)S(0.399)AGS(0.178)GS(0.294)GDPS(0.094)EGLPR 86.213 0.0066851 6212600 1380.5 1646.4 1148.4 1450.8 1684.5 1448.6 1355.4 1324.2 1531 986.99 TRUE FALSE FALSE 1218.679883 1697.123633 1210.485978 1509.969895 1560.237791 1420.970369 1407.678232 1474.941575 1467.891532 981.1193396 1.242132158 1.729783079 1.23378057 1.539027755 1.590263007 1.448315522 1.434767592 1.503325351 1.496139636 1 9.938284821 -7.858528253 0.929393586 1.046523087 1.493589368 0.048249498 0.194031148 0.197424923 0.36372349 0.035280896 0.029904233 1.39E-08 7.858528253 0.44706628 QEYDESGPS(ph)IVHR ddPTM_HeLa_CUDC101_4h_R1 2 QEYDESGPSIVHR 13 0 P60709;Q6S8J3;A5A3E0;A0A2R8YFE2;P0CG38;P0CG39;Q9BYX7;P63261 P60709;P63261 ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 QEYDESGPS(1)IVHR;QEYDESGPS(1)IVHR ; 176.17 1.38E-07 64178000 13556.4 10912.9 10991.8 10829 11082.2 12509.6 11818.5 10650.9 10154.9 12530.3 TRUE FALSE FALSE 11967.33934 11249.11351 11586.04996 11270.65343 10264.68818 12271.00022 12274.3435 11863.3554 9736.310724 12455.76922 0.960786856 0.903124754 0.930175387 0.904854066 0.82409107 0.985165991 0.985434403 0.952438601 0.781670771 1 13.6045265 -7.856287808 1.215858693 0.990073991 0.926774095 0 0.079487083 0.412008406 1.275775635 0.011257304 0.01009035 1.39E-08 7.856287808 -0.063299896 SSSKDS(ph)RPSQAAGDNQGDEAKEQTFSGGTSQDTK ddPTM_HeLa_CUDC101_4h_R1 1 SSSKDSRPSQAAGDNQGDEAKEQTFSGGTSQDTK 34 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.044)S(0.044)S(0.045)KDS(0.33)RPS(0.33)QAAGDNQGDEAKEQT(0.085)FS(0.106)GGT(0.011)S(0.005)QDTK 46.787 0.015302 83765000 3445.4 3441.1 3119.7 3176.8 3925.2 3406.8 2684.3 2907.4 3503.9 2768.8 TRUE FALSE FALSE 3041.535435 3547.116212 3288.360419 3306.363635 3635.645816 3341.820966 2787.83435 3238.366664 3359.467759 2752.331054 1.105076161 1.288768009 1.194754684 1.201295763 1.320933327 1.214178418 1.012899355 1.176590534 1.220589999 1 11.42643829 -7.854942081 1.301636883 1.027575461 1.197736979 0 0.100472882 0.262614173 0.929769594 0.019760364 0.01790404 1.40E-08 7.854942081 0.170161518 ASSPS(ph)PLT(ph)IGTPESQR ddPTM_HeLa_CUDC101_4h_R1 1 ASSPSPLTIGTPESQR 16 0 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 2 0 AS(0.009)S(0.05)PS(0.941)PLT(0.703)IGT(0.282)PES(0.016)QR 113.67 0.0044891 6264600 2450.8 1602.5 1610.9 1606.9 1588.4 2119.4 1644 1739.8 2042 2642.6 TRUE FALSE FALSE 2163.520939 1651.871126 1697.990127 1672.436328 1471.226897 2078.975976 1707.409631 1937.851799 1957.827896 2626.881698 0.82360806 0.628833467 0.646390025 0.636662218 0.560065913 0.791423526 0.649975837 0.737700446 0.745304936 1 11.35913551 -7.851950537 0.930551948 0.96421983 0.660880219 0.360542026 0.096724954 0.160350825 0.296026372 0.01939655 0.016511341 1.41E-08 7.851950537 -0.30333961 TLSPT(ph)PASATAPTSQGIPT(ph)SDEEST(ph)PKK ddPTM_HeLa_CUDC101_4h_R1 1 TLSPTPASATAPTSQGIPTSDEESTPKK 28 1 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 3 0 T(0.153)LS(0.199)PT(0.596)PAS(0.02)AT(0.028)APT(0.002)S(0.002)QGIPT(0.497)S(0.497)DEES(0.352)T(0.654)PKK 63.085 0.0010936 25663000 2221.4 1661.9 1747.3 1810.8 1785.6 1670.5 1911.6 1309.7 2239.2 2201.9 TRUE FALSE FALSE 1961.010859 1713.101169 1841.764323 1884.652251 1653.879845 1638.637996 1985.331052 1458.790954 2146.899228 2188.803001 0.895928441 0.782665762 0.84144819 0.861042428 0.755609274 0.748645719 0.907039625 0.666478872 0.980855393 1 11.0959264 -7.849931394 0.342096309 1.02554838 0.760526541 0.620081584 0.062316085 0.596733672 0.19939602 0.062634173 0.041279238 1.41E-08 7.849931394 -0.265021839 AWLDEDSNLSPS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 1 AWLDEDSNLSPSPLR 15 0 Q9C086;B8ZZ93;B8ZZH7;F8WCL7;J3KQ70 Q9C086 INO80B;INO80B-WBP1 INO80 complex subunit B 1 0 AWLDEDSNLSPS(1)PLR 176.19 3.25E-07 8493600 1218.4 931.18 947.09 955.02 883.86 1124.9 703.97 828.83 1185.3 1261.2 TRUE FALSE FALSE 1075.580999 959.8685521 998.2925502 993.9698435 818.6594087 1103.444407 731.1223587 923.180657 1136.441432 1253.698326 0.857926486 0.765629603 0.796278123 0.792830159 0.652995535 0.880151456 0.583172477 0.736365869 0.906471205 1 10.29197452 -7.849161482 0.238196652 1.079109932 0.646351031 0.54118575 0.078689333 0.935543203 0.186167969 0.160340638 0.1089698 1.42E-08 7.849161482 -0.4327589 NADSELMPPPPERGDPPRLS(ph)PDPVAGSAVSQELR ddPTM_HeLa_CUDC101_4h_R1 1 NADSELMPPPPERGDPPRLSPDPVAGSAVSQELR 34 2 E9PMR3;E9PMG4;Q9BUR4 E9PMR3 WRAP53 Telomerase Cajal body protein 1 1 0 NADSELMPPPPERGDPPRLS(0.948)PDPVAGS(0.037)AVS(0.014)QELR 73.276 1.54E-06 80916000 2949.2 2801.3 2504.8 2702.9 3306.3 3179.7 2598.5 2690.8 3456.9 2258.2 TRUE FALSE FALSE 2603.499247 2887.604733 2640.217065 2813.135945 3062.400836 3119.05252 2698.725015 2997.109795 3314.405119 2244.768126 1.159807651 1.286371051 1.176164716 1.253196672 1.364239273 1.389476483 1.202228856 1.3351534 1.476502219 1 11.13235071 -7.847953203 0.404433232 0.985073469 1.32789049 0 0.158797072 0.347339567 0.150449742 0.046668252 0.03126062 1.42E-08 7.847953203 0.342817022 GGSGSGPTIEEVD ddPTM_HeLa_CUDC101_4h_R1 2 GGSGSGPTIEEVD 13 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 138.98 0.0043779 191497000 14675.3 13663.8 13032.2 12714.8 14729.2 13128.8 11799.9 13235.8 13492.4 13093.5 FALSE FALSE TRUE 12955.08358 14084.76548 13736.76015 13233.3645 13642.65626 12878.39001 12255.0261 14742.50997 12936.23756 13015.61928 0.995348996 1.082143322 1.055405806 1.016729532 1.048175732 0.98945657 0.941563043 1.132678335 0.993901042 1 13.66795634 ITES(ph)SLVEITEHK ddPTM_HeLa_CUDC101_4h_R1 1 ITESSLVEITEHK 13 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 IT(0.096)ES(0.547)S(0.357)LVEITEHK 155.06 7.98E-05 14928000 5295.8 3581.6 3780.9 3239.8 3399 3874.3 3344.5 2223.1 4341 6174.4 TRUE FALSE FALSE 4675.034352 3691.944851 3985.306891 3371.933048 3148.262542 3800.404183 3473.498485 2476.168718 4162.062143 6137.674394 0.761694748 0.601521784 0.649318721 0.549382849 0.512940625 0.619192863 0.565930719 0.403437615 0.67811713 1 12.5834764 -7.845847529 0.356084469 1.045566642 0.480550574 0.457944622 0.112461053 0.243192767 0.08648164 0.05427901 0.035969605 1.43E-08 7.845847529 -0.565016068 EATGLS(ph)PQAAQEKDGIVIVK ddPTM_HeLa_CUDC101_4h_R1 2 EATGLSPQAAQEKDGIVIVK 20 1 P17029;C9JRM9 P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 1 0 EAT(0.117)GLS(0.883)PQAAQEKDGIVIVK;EAT(0.09)GLS(0.91)PQAAQEKDGIVIVK ; 71.54 0.0045285 36603000 3923.5 3803.6 3459.97 4131.1 4226.4 4430.2 3657.6 3340.3 3600 2890.45 TRUE FALSE FALSE 3463.593278 3920.784408 3647.026444 4299.584114 3914.626892 4345.701316 3798.674857 3720.54625 3451.606476 2873.257475 1.20545872 1.364578163 1.269300254 1.496414488 1.36243512 1.512464982 1.322079518 1.294887869 1.201286869 1 11.48847156 -7.841728754 0.612005056 1.019322458 1.399557845 0.562688824 0.09395125 0.211108486 0.181806437 0.030556646 0.023004428 1.44E-08 7.841728754 0.380235387 NGTSSTCQDS(ph)PEKTTLAAK ddPTM_HeLa_CUDC101_4h_R1 1 NGTSSTCQDSPEKTTLAAK 19 1 Q9BX63;Q9BX63-2 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 NGT(0.011)S(0.031)S(0.126)T(0.1)CQDS(0.702)PEKT(0.013)T(0.017)LAAK 62.193 0.016141 10484000 2497.1 2511.3 2282.6 2148.5 2667.3 2165.6 2010 2174.3 2392.3 2068.6 TRUE FALSE FALSE 2204.393723 2588.670176 2406.00426 2236.125117 2470.538593 2124.294788 2087.526373 2421.813523 2293.688381 2056.295875 1.072021663 1.258899659 1.170067153 1.087452999 1.201450931 1.033068642 1.015187745 1.177755377 1.115446668 1 11.00583215 -7.840743629 1.933653791 1.022662437 1.128539268 0.095258183 0.078218588 0.28466961 2.203864532 0.015671954 0.014860827 1.44E-08 7.840743629 0.105876832 LKNGFPHPEPDCNPSEAAS(ph)EES(ph)NSEIEQEIPVEQK ddPTM_HeLa_CUDC101_4h_R1 2 LKNGFPHPEPDCNPSEAASEESNSEIEQEIPVEQK 35 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 2 0 LKNGFPHPEPDCNPS(0.046)EAAS(0.851)EES(0.551)NS(0.551)EIEQEIPVEQK;LKNGFPHPEPDCNPS(0.008)EAAS(0.87)EES(0.561)NS(0.561)EIEQEIPVEQK ; 85.366 3.64E-09 38614000 3911.8 4575.9 4526.7 4159.8 4883 4728.1 4257.5 3671.1 3997.1 2353.35 TRUE FALSE FALSE 3453.264734 4716.878055 4771.427095 4329.454624 4522.790818 4637.91937 4421.713201 4089.003185 3832.337846 2339.35217 1.476162836 2.016318072 2.039636082 1.850706653 1.933351839 1.982565699 1.890144314 1.747921172 1.638204754 1 11.19189335 -7.840378821 0.906537981 1.093715407 1.93377353 0.520157086 0.210305641 0.116697858 0.204910942 0.038688913 0.032949832 1.44E-08 7.840378821 0.840058123 SQANGAGALSYVS(ph)PNTSK ddPTM_HeLa_CUDC101_4h_R1 2 SQANGAGALSYVSPNTSK 18 0 O95453;O95453-3;O95453-2;A0A494C0W0;A0A494C0K5;A0A494C0Q6;A0A494C002;A0A494C1N1;A0A494C0Q2;F5H1Z4;A0A494C1K5;A0A494C0P9;A0A494BZU6;A0A494C1G3;A0A494C156;A0A494BZW7 O95453 PARN Poly(A)-specific ribonuclease PARN 1 0 SQANGAGALSYVS(0.996)PNT(0.004)SK;SQANGAGALS(0.003)YVS(0.996)PNTSK ; 288.96 2.89E-104 52864000 3839.6 2970.5 3426.1 3349 3473.4 2586.61 2237.49 1190.12 4008.3 2706.22 TRUE FALSE FALSE 3389.527908 3062.017584 3611.325329 3485.586696 3217.174202 2537.274724 2323.790739 1325.59845 3843.076177 2690.123283 1.259989804 1.138244334 1.342438598 1.295697754 1.195920731 0.943181578 0.863823139 0.492764944 1.428587382 1 11.39345657 -4.413851728 1.296120316 1.159174125 0.329932858 0.74339933 0.134046969 0.44144256 0.76951137 0.020053996 0.447019137 3.86E-05 4.413851728 -0.829241267 down SWQQTTFQNRPDS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SWQQTTFQNRPDSR 14 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 SWQQTTFQNRPDS(1)R 149.31 1.18E-06 0 2381.6 1888.7 1757.4 1713.3 1927.5 1945.8 1936.8 2281.9 1913.3 2289.2 TRUE FALSE FALSE 2102.432458 1946.888608 1852.41036 1783.17578 1785.312165 1908.687107 2011.503025 2541.662272 1834.432964 2275.583737 0.923909072 0.855555688 0.81403744 0.783612464 0.784551294 0.838768126 0.883950343 1.116927596 0.806137315 1 11.15202096 -7.837716323 1.166383834 0.980790956 0.86018598 0 0.106307105 0.440702714 1.257379862 0.022463426 0.020188678 1.45E-08 7.837716323 -0.120604977 GGTADK(ac)GASANQEKG ddPTM_HeLa_CUDC101_4h_R1 1 GGTADKGASANQEKG 15 2 P55198 P55198 MLLT6 Protein AF-17 0 1 GGTADK(1)GASANQEKG 174.94 2.81E-06 311770 179.97 0 0 148.82 159.5 76.467 0 0 0 169.51 FALSE TRUE FALSE 158.8741894 0 0 154.8895229 147.7340028 75.00851938 0 0 0 168.501747 0.942863752 0 0 0.919216125 0.87675057 0.445149802 0 0 0 1 7.396619739 -6.60162899 0.265516459 1.144874739 5.74E-16 0 0.493084393 2.109851699 0.388437207 0.441206712 0.887532134 2.50E-07 6.60162899 -1.144874739 DSST(ph)SPGDYVLSVSENSR ddPTM_HeLa_CUDC101_4h_R1 1 DSSTSPGDYVLSVSENSR 18 0 P46108;I3L297;P46108-2 P46108;P46108-2 CRK Adapter molecule crk 1 0 DSS(0.295)T(0.687)S(0.018)PGDYVLSVSENSR 166.67 2.77E-05 25953000 2699.6 2002.1 1705.8 1785 2224.8 2100.5 1908.5 1879.8 2487.5 2851.8 TRUE FALSE FALSE 2383.15698 2063.782328 1798.020708 1857.800015 2060.680936 2060.436462 1982.111484 2093.788834 2384.964197 2834.837367 0.840667972 0.728007311 0.634258857 0.655346242 0.726913283 0.726827044 0.6991976 0.738592223 0.841305475 1 11.46905026 -7.837257472 0.832966591 0.970951627 0.694644435 0.691436957 0.056878789 0.130356299 0.195298097 0.013976328 0.011658863 1.45E-08 7.837257472 -0.276307191 T(ph)TSISPALAR ddPTM_HeLa_CUDC101_4h_R1 2 TTSISPALAR 10 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 T(0.942)T(0.008)S(0.004)IS(0.046)PALAR;T(0.986)T(0.01)S(0.001)IS(0.003)PALAR ; 139.15 0.0065267 286510000 5915.6 5373 5361.2 5259.8 6376.4 5603 5163.5 5046.4 5199.3 4855.1 TRUE FALSE FALSE 5222.182335 5538.535761 5651.042689 5474.317379 5906.025676 5496.13211 5362.657925 5620.861778 4984.982653 4826.221649 1.082043618 1.147592499 1.170904094 1.134286358 1.223736932 1.138806402 1.11115036 1.164650566 1.032895506 1 12.23667846 -7.836239903 0.757493879 1.012852123 1.159747213 0.762830959 0.03086516 0.1806936 0.227316704 0.010168295 0.008251446 1.46E-08 7.836239903 0.14689509 GSS(ph)PLPTATTPKPLIPTEASIR ddPTM_HeLa_CUDC101_4h_R1 1 GSSPLPTATTPKPLIPTEASIR 22 1 Q9BUK6-2;Q9BUK6;A0A3B3IUD2;Q9BUK6-7;Q9BUK6-3 Q9BUK6-2 MSTO1 Protein misato homolog 1 1 0 GS(0.236)S(0.269)PLPT(0.241)AT(0.241)T(0.013)PKPLIPTEASIR 61.091 0.007311 28146000 960.97 778 714.99 831.1 797.61 778.81 879.88 387 893.57 1020.3 TRUE FALSE FALSE 848.3265533 801.9692578 753.6445221 864.9958503 738.7718994 763.9554968 913.8172663 431.0545157 856.7366664 1014.23121 0.836423238 0.790716406 0.74306974 0.85285864 0.728405803 0.753236036 0.900995017 0.425006164 0.844715345 1 9.98617086 -7.835169014 0.049247191 1.723987563 1.66E-15 0.335309752 0.117023559 29.13115277 0.986369449 17.95194026 16.18123729 1.46E-08 7.835169014 -1.723987563 (ac)SDEFSLADALPEHS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 7 SDEFSLADALPEHSPAK 17 0 Q8NDC0 Q8NDC0 MAPK1IP1L MAPK-interacting and spindle-stabilizing protein-like 1 0 S(0.055)DEFS(0.122)LADALPEHS(0.823)PAK;S(0.039)DEFS(0.032)LADALPEHS(0.93)PAK;S(0.001)DEFS(0.003)LADALPEHS(0.996)PAK;S(0.001)DEFSLADALPEHS(0.998)PAK;SDEFS(0.001)LADALPEHS(0.999)PAK;S(0.001)DEFS(0.004)LADALPEHS(0.995)PAK;SDEFS(0.001)LADALPEHS(0.999)PAK ;;;;;; 78.225 1.84E-23 308599200 23752.42 21749.64 19200.87 17333.17 20601.06 19561.5 17988.39 17076.3 24073.66 24106.1 TRUE FALSE FALSE 20968.19733 22419.72063 20238.92711 18040.09159 19081.36085 19188.39698 18682.20823 19020.19697 23081.33355 23962.71585 0.87503426 0.9356085 0.844600722 0.752840025 0.796293749 0.800760527 0.779636513 0.793741289 0.963218597 1 14.54850381 -7.832816496 0.261452029 1.040982906 0.746846182 0.816249057 0.034823058 0.592723716 0.13514614 0.069310118 0.047130574 1.47E-08 7.832816496 -0.294136724 ESTQLSPADLT(ph)EGKPTDPSK ddPTM_HeLa_CUDC101_4h_R1 1 ESTQLSPADLTEGKPTDPSK 20 1 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 ES(0.202)T(0.179)QLS(0.035)PADLT(0.58)EGKPT(0.003)DPSK 70.986 0.0097547 20760000 6389.1 5389.1 5245.8 4796.8 5315.3 5510.4 4772.8 5190.6 5849.8 6207.9 TRUE FALSE FALSE 5640.179383 5555.131783 5529.403816 4992.434238 4923.200909 5405.298301 4956.888495 5781.476923 5608.668768 6170.975135 0.913985109 0.900203236 0.896034046 0.809018693 0.797799505 0.875922878 0.803258543 0.936882226 0.908878847 1 12.59128277 -7.830769564 0.523607157 0.994917931 0.84230117 0.361650616 0.049131452 0.348667392 0.230328532 0.02030444 0.014672854 1.48E-08 7.830769564 -0.152616762 IQPEDMFVCDINEKDISGPS(ph)PSKK ddPTM_HeLa_CUDC101_4h_R1 1 IQPEDMFVCDINEKDISGPSPSKK 24 2 S4R3D6;Q96GX9-3;Q96GX9 S4R3D6 APIP Methylthioribulose-1-phosphate dehydratase 1 0 IQPEDMFVCDINEKDIS(0.045)GPS(0.825)PS(0.13)KK 51.851 0.025183 51913000 1317 1237.3 1189.6 1260.3 1767.2 1400.4 1473.8 1843.2 1137.4 464.06 TRUE FALSE FALSE 1162.623256 1275.419746 1253.913374 1311.700481 1636.837177 1373.689703 1530.64496 2053.022438 1090.515891 461.2997505 2.520320584 2.764839446 2.718218193 2.843488383 3.548315764 2.977867865 3.318113565 4.450517121 2.364007111 1 8.849560702 -7.829717886 0.178552399 1.35E-15 4.526949678 0.642820349 0.502761839 0.869327597 0.120783969 1.540851574 1.123951542 1.48E-08 7.829717886 4.526949678 RYS(ph)DFEWLK ddPTM_HeLa_CUDC101_4h_R1 2 RYSDFEWLK 9 1 A0A087X0R6;Q9UMY4-3;Q9UMY4;Q9UMY4-1 A0A087X0R6 SNX12 Sorting nexin-12 1 0 RYS(1)DFEWLK;RYS(1)DFEWLK ; 135.02 0.0013499 63638000 10062 8004.6 8197.8 7105.2 7533.7 8487.3 7339.1 6985.6 9025 10327.3 TRUE FALSE FALSE 8882.547613 8251.212238 8640.997865 7394.980767 6977.95396 8325.418893 7622.171545 7780.812467 8652.98568 10265.87276 0.865250118 0.803751657 0.841720725 0.720346038 0.679723402 0.810980137 0.742476721 0.757929954 0.84288846 1 13.32556866 -7.828790959 0.454076122 1.002391465 0.735573799 0.498424292 0.060691988 0.247557172 0.129462495 0.025485616 0.017769323 1.48E-08 7.828790959 -0.266817666 SLMSS(ph)PEDLTK ddPTM_HeLa_CUDC101_4h_R1 3 SLMSSPEDLTK 11 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SLMS(0.417)S(0.583)PEDLTK;SLMS(0.068)S(0.932)PEDLTK;SLMS(0.021)S(0.979)PEDLTK ;; 208.08 2.29E-23 49826000 14402.2 11813.2 10646.9 10244.4 9750 10142.8 9254.9 9185.3 13894.6 16276.7 TRUE FALSE FALSE 12713.99595 12177.15069 11222.50362 10662.21091 9030.761925 9949.342989 9611.864593 10230.91742 13321.85871 16179.88546 0.785790232 0.752610438 0.693608347 0.658979381 0.558147457 0.614920483 0.594062586 0.632323229 0.823359271 1 13.98191377 -7.826625284 0.342991719 1.0362509 0.56460571 0.780011883 0.059130642 0.176488047 0.059668527 0.032845345 0.02213835 1.49E-08 7.826625284 -0.47164519 SATPEPVTDNRDVEDMELS(ph)DVEDDGSK ddPTM_HeLa_CUDC101_4h_R1 3 SATPEPVTDNRDVEDMELSDVEDDGSK 27 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 SATPEPVT(0.028)DNRDVEDMELS(0.968)DVEDDGS(0.004)K;SATPEPVT(0.009)DNRDVEDMELS(0.99)DVEDDGSK;SATPEPVTDNRDVEDMELS(0.994)DVEDDGS(0.006)K ;; 101 6.52E-07 46401100 4708.6 3750.3 2723.22 2754.36 3397.9 3268.96 3171.87 3129.47 5152.6 5353.2 TRUE FALSE FALSE 4156.665046 3865.842298 2870.44551 2866.694706 3147.243687 3206.610034 3294.210088 3485.716215 4940.207647 5321.358928 0.781128486 0.726476517 0.539419639 0.53871478 0.591436084 0.602592322 0.619054293 0.655042492 0.928373318 1 12.377579 -7.825499811 0.648705839 0.973294962 0.58650346 0.882680501 0.052064337 0.149497473 0.142506363 0.021855611 0.017001289 1.49E-08 7.825499811 -0.386791501 TVS(ph)SPIPYTPSPSSSR ddPTM_HeLa_CUDC101_4h_R1 3 TVSSPIPYTPSPSSSR 16 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 T(0.213)VS(0.393)S(0.393)PIPYTPSPSSSR;T(0.403)VS(0.586)S(0.01)PIPYTPSPSSSR;T(0.003)VS(0.498)S(0.498)PIPYTPSPSSSR ;; 214.48 7.20E-24 102658000 5785 4306.86 4251.52 3701.56 4664.1 4312.17 4207.61 3661.67 4989.3 6122.4 TRUE FALSE FALSE 5106.891069 4439.549252 4481.370031 3852.525616 4320.038635 4229.922542 4369.898927 4078.499712 4783.638942 6085.983693 0.839123357 0.729471105 0.73634276 0.633016093 0.70983408 0.695026927 0.718026723 0.670146342 0.786009162 1 12.57127475 -7.823917571 0.584630073 0.987622151 0.679785734 0.522531696 0.068417921 0.120667674 0.096062731 0.014048255 0.010572606 1.50E-08 7.823917571 -0.307836417 SQQQPTPVT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SQQQPTPVTPK 11 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 SQQQPT(0.471)PVT(0.529)PK 164.22 0.00030453 201920000 5843.6 5036 4696.6 4638.4 4768.5 4703.9 4321.9 4710.4 5239.9 5800.8 TRUE FALSE FALSE 5158.622066 5191.153191 4950.512402 4827.574001 4416.737255 4614.180945 4488.597131 5246.612896 5023.909104 5766.296584 0.894616153 0.90025775 0.858525456 0.83720529 0.765957351 0.800198338 0.778419401 0.909875658 0.871254024 1 12.49342933 -7.823612772 0.410566589 1.004191131 0.804376026 0.320055427 0.055071104 0.383379496 0.17094618 0.029784229 0.020471692 1.50E-08 7.823612772 -0.199815105 DVDAS(ph)PSPLSVQDLK ddPTM_HeLa_CUDC101_4h_R1 3 DVDASPSPLSVQDLK 15 0 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 0 DVDAS(0.634)PS(0.356)PLS(0.01)VQDLK;DVDAS(0.985)PS(0.015)PLSVQDLK;DVDAS(0.992)PS(0.008)PLSVQDLK ;; 166.62 1.41E-05 49492000 12292.3 10862.1 9843 10090.4 11386.7 10382 9574.3 10668.7 11365.2 11398.3 TRUE FALSE FALSE 10851.41523 11196.74843 10375.14235 10501.93013 10546.72583 10183.98065 9943.583958 11883.18168 10896.72165 11330.5024 0.95771704 0.98819523 0.915682463 0.926872415 0.930825964 0.89881104 0.877594267 1.048778003 0.961715664 1 13.46792421 -7.822516666 0.537189219 0.996032243 0.929523508 0.101961024 0.046281838 0.806712984 0.556513713 0.020368357 0.014942743 1.50E-08 7.822516666 -0.066508735 NSESESNKVAAETQS(ph)PSLFGSTK ddPTM_HeLa_CUDC101_4h_R1 1 NSESESNKVAAETQSPSLFGSTK 23 1 Q9UKX7;Q9UKX7-2 Q9UKX7 NUP50 Nuclear pore complex protein Nup50 1 0 NSESESNKVAAET(0.173)QS(0.577)PS(0.241)LFGS(0.006)T(0.003)K 70.535 0.0011215 16018000 1654.2 1664.5 1595.8 1411.3 1767.4 1741.7 1433 1009.4 2016.6 1352.1 TRUE FALSE FALSE 1460.297184 1715.781272 1682.073775 1468.858914 1637.022423 1708.479974 1488.27129 1124.306016 1933.474894 1344.057649 1.086484039 1.276568214 1.251489306 1.092854101 1.217970393 1.271135933 1.107297214 0.836501334 1.438535688 1 10.3923793 -7.821828056 1.841568916 1.02703513 1.157018366 0 0.179480634 0.397442205 2.800080456 0.026128148 0.024871635 1.51E-08 7.821828056 0.129983236 GGVVGIK(ac)VDK ddPTM_HeLa_CUDC101_4h_R1 2 GGVVGIKVDK 10 1 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8;H3BR04;H3BMQ8;H3BU78 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 1 ; GGVVGIK(1)VDK;GGVVGIK(1)VDK 117.7 0.0035388 12899700 7184.3 5653.3 5960.7 5980.6 6517.8 6434 6445.5 6548.8 6430 5920.9 FALSE TRUE FALSE 6342.167245 5827.471472 6282.953472 6224.514718 6036.994879 6311.28217 6694.105094 7294.288921 6164.952678 5885.682223 1.077558557 0.99010977 1.06749791 1.057568941 1.025708601 1.072311064 1.137354149 1.239327684 1.047449122 1 12.52299394 -4.33758455 1.26997 1.036540539 1.313591103 0.85241113 0.026382999 0.404595136 0.605645949 0.004840541 0.140099212 4.60E-05 4.33758455 0.277050564 (ac)AHS(ph)PVAVQVPGMQNNIADPEELFTK ddPTM_HeLa_CUDC101_4h_R1 3 AHSPVAVQVPGMQNNIADPEELFTK 25 0 Q8NBY1;B4E0Y9;Q9P289-3;Q9P289 Q8NBY1 STK26 Serine/threonine-protein kinase 26 1 0 AHS(1)PVAVQVPGMQNNIADPEELFTK;AHS(1)PVAVQVPGMQNNIADPEELFTK;AHS(1)PVAVQVPGMQNNIADPEELFTK ;; 66.501 8.77E-08 67073000 7358.9 6415.7 5671.5 5956.8 6312.7 7102 5764.3 5280.4 6966.6 6921.3 TRUE FALSE FALSE 6496.300897 6613.360113 5978.118445 6199.744051 5847.024698 6966.541183 5986.630982 5881.499392 6679.433799 6880.1318 0.944211693 0.961225788 0.868895919 0.901108326 0.849841961 1.012559263 0.870133183 0.854852721 0.970829338 1 12.74822049 -7.821569533 0.40465607 1.004373685 0.88862179 0.355339407 0.04705399 0.767727518 0.334777592 0.034577061 0.023760614 1.51E-08 7.821569533 -0.115751895 GHDDLGDHYLDCGDLSNALK ddPTM_HeLa_CUDC101_4h_R1 2 GHDDLGDHYLDCGDLSNALK 20 0 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QLT0;J3KSA5;J3KRJ4;Q13098-6 C9JFE4 GPS1 COP9 signalosome complex subunit 1 0 0 ; ; 97.904 0.00074202 18439400 5642.7 6241.2 4740 6034.9 9095.7 8255.3 7642.2 4950 6982.8 3880.9 FALSE FALSE TRUE 4981.27126 6433.483974 4996.258738 6281.029307 8424.728332 8097.843907 7936.962214 5513.487991 6694.966028 3857.816234 1.291215278 1.667649153 1.295100242 1.628130768 2.183807579 2.099074558 2.05737177 1.429173309 1.735428963 1 11.91356871 -6.888646552 0.595482978 1.061666018 1.963711585 0.240929112 0.324277624 0.3272948 0.246973372 0.070414772 0.112015228 1.29E-07 6.888646552 0.902045567 GHDGGHSHGGDMSNRPVCR ddPTM_HeLa_CUDC101_4h_R1 1 GHDGGHSHGGDMSNRPVCR 19 1 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 0 0 49.223 0.027073 407250 0 0 0 0 0 0 142.74 0 0 166.75 FALSE FALSE TRUE 0 0 0 0 0 0 148.2455296 0 0 165.7581636 0 0 0 0 0 0 0.894348287 0 0 1 7.372936115 -9.234296995 0.900627759 1.01644376 0.115397285 0 0.403667686 0.333088296 0.47186906 0.201093099 0.05184095 5.83E-10 9.234296995 -0.901046475 GHEEFPLDGR ddPTM_HeLa_CUDC101_4h_R1 1 GHEEFPLDGR 10 0 H0YIQ2;P49750-3;P49750-1;P49750 H0YIQ2 YLPM1 YLP motif-containing protein 1 0 0 83.397 0.035549 3364000 722.3 630.36 787.4 373.62 641.31 720.36 642.46 863.77 754.95 764.17 FALSE FALSE TRUE 637.6330889 649.7806444 829.9692258 388.8578385 594.001839 706.6203332 667.2398974 962.0980853 723.8306415 759.6246829 0.839405437 0.85539696 1.092604341 0.51190785 0.781967533 0.930222976 0.878381012 1.266544001 0.952879307 1 9.569142974 -4.260257907 23.78086383 0.89054732 1.266544232 0.386922027 0.147452652 43.58735034 877100.1703 0.020577251 0.169783813 5.49E-05 4.260257907 0.375996912 TDS(ph)VKTPESEGNPLLEQLEK ddPTM_HeLa_CUDC101_4h_R1 1 TDSVKTPESEGNPLLEQLEK 20 1 Q8WYK2;Q8WYK2-2 Q8WYK2 JDP2 Jun dimerization protein 2 1 0 T(0.402)DS(0.45)VKT(0.121)PES(0.027)EGNPLLEQLEK 81.878 0.0018216 7275200 5130.3 4631.6 3768.4 3430.6 3859.8 4443.9 3724.2 4412 4953 5239.9 TRUE FALSE FALSE 4528.934011 4774.294106 3972.131103 3570.514696 3575.070244 4359.140012 3867.843642 4914.244246 4748.835244 5208.732842 0.869488635 0.91659416 0.762590677 0.685486241 0.686360839 0.836890688 0.74256902 0.943462526 0.911706434 1 12.34671673 -7.82029581 0.637160862 0.982052035 0.774818343 0.388349671 0.082380823 0.395790024 0.365586201 0.030925621 0.024013649 1.51E-08 7.82029581 -0.207233692 HQPASASSTAAS(ph)PAHPAK ddPTM_HeLa_CUDC101_4h_R1 1 HQPASASSTAASPAHPAK 18 0 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91 Q96L91-3 EP400 E1A-binding protein p400 1 0 HQPASASST(0.001)AAS(0.999)PAHPAK 128.52 1.83E-05 0 1145.3 603.04 745.75 534.67 1462.6 1052.7 810.68 435.74 1022.7 1220.9 TRUE FALSE FALSE 1011.04967 621.6189476 786.0675008 556.4761536 1354.706912 1032.621501 841.9481992 485.3428803 980.5438731 1213.638033 0.833073489 0.512194683 0.647695177 0.458519047 1.11623637 0.850848007 0.693739135 0.399907441 0.807937661 1 10.24512249 -7.816263468 1.579720298 0.950722198 0.686978122 0.162183487 0.202931852 0.353712362 1.838614336 0.044011782 0.041474042 1.53E-08 7.816263468 -0.263744076 GHLDAELDAYMAQTDPETND ddPTM_HeLa_CUDC101_4h_R1 4 GHLDAELDAYMAQTDPETND 20 0 X6R700;Q9Y3Y2-4;Q9Y3Y2;Q9Y3Y2-3 X6R700 CHTOP Chromatin target of PRMT1 protein 0 0 ;;; ;;; 151.16 9.05E-05 25810100 3953.28 3636.04 3521.58 3531.78 3857.04 3726.01 3659.22 3349.72 3818.28 4793.48 FALSE FALSE TRUE 3489.882511 3748.062083 3711.967267 3675.821254 3572.513844 3654.942567 3800.357341 3731.038585 3660.888882 4764.968168 0.732404161 0.786587014 0.779011976 0.771426193 0.749745584 0.767044488 0.797561958 0.783014378 0.768292411 1 12.21825086 -9.303377103 0.859103811 1.011122643 0.769051189 0 0.073055763 0.117102953 0.143508799 0.019097815 0.004274796 4.97E-10 9.303377103 -0.242071454 DVPPDILLDS(ph)PERK ddPTM_HeLa_CUDC101_4h_R1 6 DVPPDILLDSPERK 14 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK;DVPPDILLDS(1)PERK ;;;;; 142.4 0.00024119 293587400 26440.8 21211.1 19508.5 20363 25319.2 23264.9 20561.6 18126.7 22902.2 25232.3 TRUE FALSE FALSE 23341.44951 21864.58885 20563.18852 21193.49116 23451.45306 22821.16079 21354.6678 20190.17026 21958.16162 25082.21716 0.930597537 0.871716751 0.819831373 0.844960835 0.934983256 0.909854207 0.851386768 0.804959551 0.875447393 1 14.61437726 -7.814744301 0.897512998 0.986155731 0.863281999 0.163942973 0.051780945 0.242593612 0.417356266 0.011615162 0.010024614 1.53E-08 7.814744301 -0.122873732 LNSEASPS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 LNSEASPSR 9 0 Q13111;Q13111-3;Q13111-2;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 LNSEAS(0.006)PS(0.994)R 99.539 0.018175 119050000 3339.5 1956.3 2114 2529.6 2088.3 2372.5 2256.6 1539.4 2484.2 3692.4 TRUE FALSE FALSE 2948.048872 2016.571284 2228.289235 2632.768022 1934.250269 2327.248515 2343.637818 1714.639074 2381.800225 3670.437441 0.803187337 0.549408978 0.607090918 0.717289986 0.526980857 0.634052086 0.638517304 0.467148426 0.64891454 1 11.8417363 -7.814414335 0.63554191 0.982420154 0.57860902 0.229936188 0.127333765 0.187221621 0.172155261 0.028431487 0.022162721 1.53E-08 7.814414335 -0.403811134 QSNASS(ph)DVEVEEK ddPTM_HeLa_CUDC101_4h_R1 3 QSNASSDVEVEEK 13 0 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QSNAS(0.078)S(0.922)DVEVEEK;QSNAS(0.207)S(0.793)DVEVEEK;QSNAS(0.205)S(0.795)DVEVEEK ;; 248.81 8.16E-56 1175540000 20672.5 15884.3 16129.5 15313.3 15428.9 15369.2 15715.3 14128.7 17170.8 21353.4 TRUE FALSE FALSE 18249.30089 16373.67646 17001.50956 15937.84256 14290.74079 15076.05812 16321.44439 15737.0541 16463.01236 21226.38903 0.859745898 0.771383038 0.80096099 0.750850394 0.673253504 0.710250721 0.768922324 0.741391015 0.775591757 1 14.37357134 -7.809202542 0.488968013 0.998426071 0.71807312 0.275188626 0.07310848 0.169919965 0.100431375 0.01812436 0.013103957 1.55E-08 7.809202542 -0.280352951 SQQQQS(ph)LMESMQPGK ddPTM_HeLa_CUDC101_4h_R1 1 SQQQQSLMESMQPGK 15 0 A8MVX0;A8MVX0-2 A8MVX0 ARHGEF33 Rho guanine nucleotide exchange factor 33 1 0 SQQQQS(0.99)LMES(0.01)MQPGK 104.41 0.00092831 0 1147.5 1215.9 1164.9 1280.8 1220.7 1057.5 1218.7 952.48 979.89 833.07 TRUE FALSE FALSE 1012.991789 1253.360438 1227.878018 1333.03656 1130.651393 1037.329949 1265.705667 1060.906473 939.4985195 828.1148626 1.223250343 1.513510377 1.482738776 1.609724231 1.365331603 1.252640179 1.528418006 1.281110292 1.134502666 1 9.693687079 -7.803427675 1.165958543 1.056448839 1.434846617 0.599975629 0.116952454 0.180780018 0.514614946 0.028532614 0.026094804 1.57E-08 7.803427675 0.378397778 YSHS(ph)GS(ph)SSPDTK ddPTM_HeLa_CUDC101_4h_R1 1 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 Y(0.012)S(0.223)HS(0.626)GS(0.487)S(0.272)S(0.38)PDTK 146.5 0.008665 11263000 8980.8 2272.2 5921.9 6419.5 5198.3 4605 4603.5 1961.6 9176.8 10648 TRUE FALSE FALSE 7928.084238 2342.203789 6242.055827 6681.314957 4814.831765 4517.167297 4781.058537 2184.900615 8798.52842 10584.66522 0.74901606 0.221282746 0.589726335 0.631225912 0.454887487 0.42676525 0.451696718 0.206421325 0.831252405 1 13.36968802 -7.802507548 0.376971707 1.05805179 0.350967272 0.608609003 0.151831449 0.455223692 0.178725603 0.125442935 0.0870537 1.58E-08 7.802507548 -0.707084518 LGEVTGS(ph)PS(ph)PPPR ddPTM_HeLa_CUDC101_4h_R1 2 LGEVTGSPSPPPR 13 0 O94875-12;O94875-4;O94875-10;O94875-5;O94875-3;H7BXR3;H7BZX1 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 2 0 LGEVT(0.018)GS(0.982)PS(0.999)PPPR;LGEVT(0.014)GS(0.989)PS(0.997)PPPR ; 109.6 0.0012175 0 6313.6 5364 4725.6 5206.1 6130.9 5299.2 5005.3 4963.3 6527.9 5860.5 TRUE FALSE FALSE 5573.529379 5529.258482 4981.08023 5418.427261 5678.635721 5198.126589 5198.356098 5528.30201 6258.817199 5825.641485 0.956723718 0.9491244 0.855026909 0.930099676 0.974765738 0.892283983 0.892323379 0.948960217 1.074356741 1 12.5082012 -7.8023253 0.807495085 0.992113215 0.917019995 0.490389034 0.042008884 0.346485575 0.489096824 0.009899353 0.00837842 1.58E-08 7.8023253 -0.07509322 SEGDNYSATLLEPAASS(ph)LSPDHK ddPTM_HeLa_CUDC101_4h_R1 1 SEGDNYSATLLEPAASSLSPDHK 23 0 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;C9JVY5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 SEGDNYSATLLEPAAS(0.006)S(0.962)LS(0.033)PDHK 175.33 2.82E-10 123900000 3512.9 2219.9 2515.7 2089.9 3203.1 3238.2 2615.6 1926.7 3559 3620.4 TRUE FALSE FALSE 3101.123187 2288.292488 2651.706352 2175.135155 2966.813694 3176.43673 2716.484568 2146.02774 3412.296514 3598.8657 0.861694613 0.635837144 0.736817257 0.604394645 0.824374662 0.882621636 0.754816877 0.596306703 0.948158892 1 11.81332655 -7.799993671 1.27668012 0.963134844 0.728331635 0.537674081 0.092109751 0.220150209 0.74931889 0.022243388 0.020637919 1.58E-08 7.799993671 -0.234803208 GHWDDVFLDSTQR ddPTM_HeLa_CUDC101_4h_R1 2 GHWDDVFLDSTQR 13 0 Q9H6T3-3;Q9H6T3 Q9H6T3-3 RPAP3 RNA polymerase II-associated protein 3 0 0 ; ; 95.631 0.011627 8446700 4128 3573.4 3429.5 3899.5 3929.8 3836.6 3340.5 3936.1 3776.8 3678.9 FALSE FALSE TRUE 3644.122098 3683.492218 3614.909144 4058.538465 3639.906483 3763.423247 3469.344204 4384.169714 3621.118705 3657.017739 0.996473727 1.007239363 0.988485537 1.10979458 0.995320981 1.029096252 0.948681262 1.198837421 0.990183522 1 11.83645191 -4.250964064 24.82922941 1.005038629 1.19883754 0.681451039 0.039270135 575.6537839 1364420.756 0.005025865 0.096858311 5.61E-05 4.250964064 0.193798911 EATNTTSEPSAPSQDLLDLSPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 EATNTTSEPSAPSQDLLDLSPSPR 24 0 I3NI44;J3KQU4;I3L4I4;O75674-2;O75674-3;O75674 I3NI44 TOM1L1 TOM1-like protein 1 1 0 EATNTTSEPSAPSQDLLDLS(0.171)PS(0.829)PR;EATNTTSEPSAPSQDLLDLS(0.112)PS(0.888)PR ; 184.28 4.25E-15 105563000 4903.2 3360.3 3379.7 3103.9 4400.9 3816.6 3637.2 4296.1 3939.8 4945 TRUE FALSE FALSE 4328.454329 3463.82686 3562.416805 3230.490458 4076.254375 3743.804714 3777.488022 4785.150659 3777.399776 4915.58692 0.880556971 0.704661908 0.724718505 0.657193233 0.829250798 0.761619065 0.768471412 0.973464763 0.76845346 1 12.26314797 -7.799661952 1.358627955 0.966816675 0.770892607 0.050440747 0.104761707 0.223035341 0.858847554 0.019256761 0.018004069 1.59E-08 7.799661952 -0.195924067 APRPS(ph)APSPPPR ddPTM_HeLa_CUDC101_4h_R1 2 APRPSAPSPPPR 12 1 Q8IV50 Q8IV50 LYSMD2 LysM and putative peptidoglycan-binding domain-containing protein 2 1 0 APRPS(0.5)APS(0.5)PPPR;APRPS(0.646)APS(0.354)PPPR ; 81.128 0.01858 214482000 1589.25 1368.01 1582.38 1759.62 1483.92 1249.39 1406.19 1226.64 1760.38 1308.19 TRUE FALSE FALSE 1402.960524 1410.156767 1667.928249 1831.384909 1374.454178 1225.559967 1460.427219 1366.275739 1687.816391 1300.408828 1.07886112 1.084394951 1.282618369 1.408314732 1.056940055 0.942442055 1.123052373 1.050650926 1.29791213 1 10.34474954 -7.792743994 1.270942484 1.021989179 1.13847071 0 0.150584934 0.615434901 2.075413476 0.0307112 0.028577935 1.61E-08 7.792743994 0.116481531 EHSNPS(ph)PSQDTDGTK ddPTM_HeLa_CUDC101_4h_R1 2 EHSNPSPSQDTDGTK 15 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 0 EHSNPS(1)PSQDTDGTK;EHS(0.01)NPS(0.968)PS(0.022)QDTDGTK ; 114.21 0.0011243 17481600 11618.8 9766.9 9236.5 9700.8 9631.5 8996.1 9528.8 8560.6 11197.3 11327.6 TRUE FALSE FALSE 10256.86188 10067.80661 9735.853129 10096.44055 8921.003434 8824.514381 9896.329008 9535.104101 10735.74255 11260.22293 0.910893322 0.894103667 0.864623479 0.896646595 0.792258154 0.783689136 0.878875051 0.846795322 0.953421848 1 13.45894777 -7.792736219 0.378527552 1.008652377 0.822425165 0.705101006 0.034125791 0.388647837 0.15390418 0.028125555 0.019711071 1.61E-08 7.792736219 -0.186227213 (ac)S(ph)DEFS(ph)LADALPEHSPAK ddPTM_HeLa_CUDC101_4h_R1 1 SDEFSLADALPEHSPAK 17 0 Q8NDC0 Q8NDC0 MAPK1IP1L MAPK-interacting and spindle-stabilizing protein-like 2 0 S(0.941)DEFS(0.82)LADALPEHS(0.239)PAK 54.471 0.027385 3440000 1160.1 917.35 733.21 676.06 824.6 842.57 646.22 932.15 1298.3 1298.4 TRUE FALSE FALSE 1024.114837 945.6124662 772.8495504 703.632649 763.7709008 826.4993811 671.1449219 1038.262188 1244.783524 1290.677059 0.793471015 0.732648388 0.5987939 0.545165535 0.591759879 0.6403611 0.519994461 0.804432202 0.964442279 1 10.33391235 -7.791163613 0.646123849 0.973933722 0.603915902 0.756762308 0.07935308 0.20876915 0.197475192 0.028755182 0.022954001 1.62E-08 7.791163613 -0.37001782 GHYTEGAELVDSVLDVVR ddPTM_HeLa_CUDC101_4h_R1 3 GHYTEGAELVDSVLDVVR 18 0 Q5JP53;P07437;Q5ST81;P68371;Q9BVA1;Q13885;A0A0B4J269;Q13509;Q13509-2;G3V2A3 Q5JP53;P68371;Q9BVA1;A0A0B4J269 TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain 0 0 ;; ;; 179.9 2.38E-08 52137400 6977.3 4099.02 3706.46 3406.87 6265.6 6358.2 5631.5 4899.2 5769.1 6089.74 FALSE FALSE TRUE 6159.431471 4225.305948 3906.842439 3545.816884 5803.399171 6236.927928 5848.708841 5456.905125 5531.295256 6053.517956 1.017496192 0.697991809 0.645383803 0.585744836 0.958682078 1.03029808 0.966166927 0.901443618 0.913732361 1 12.56355808 -7.291980653 23.34151847 1.008262126 0.828592654 0.1821024 0.141608204 332.0754615 253791.4848 0.026432838 0.030227433 5.11E-08 7.291980653 -0.179669472 GHYTEGAELVDSVLDVVRK ddPTM_HeLa_CUDC101_4h_R1 2 GHYTEGAELVDSVLDVVRK 19 1 Q5JP53;P07437;Q5ST81;P68371;Q9BVA1;Q13885;A0A0B4J269;Q13509;Q13509-2;G3V2A3 Q5JP53;P68371;Q9BVA1;A0A0B4J269 TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain 0 0 ; ; 176.19 5.63E-08 23491000 16956.7 12676.4 11135.6 10812.4 29822.8 20198.8 20650.3 21904.1 19964.9 9630.1 FALSE FALSE TRUE 14969.06133 13066.94486 11737.62422 11253.37641 27622.83146 19813.54154 21446.78899 24397.5742 19141.93837 9572.819737 1.563704503 1.365004797 1.226140734 1.175555031 2.885548064 2.069770672 2.240383667 2.548629858 1.999613374 1 13.22472823 -5.774137609 24.99928692 1.271623417 2.395939364 0.697823468 0.332068311 72.13349006 142010.8587 0.041346424 0.075305662 1.68E-06 5.774137609 1.124315947 RYPSSISS(ph)SPQKDLTQAK ddPTM_HeLa_CUDC101_4h_R1 1 RYPSSISSSPQKDLTQAK 18 2 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 RY(0.02)PS(0.209)S(0.209)IS(0.069)S(0.282)S(0.211)PQKDLTQAK 73.405 0.01318 685470000 2217.9 2085 2171.9 2057.3 2530.8 1801.4 1998.9 2430.6 1871.3 1733.9 TRUE FALSE FALSE 1957.921124 2149.236379 2289.319484 2141.205586 2344.107926 1767.041296 2075.998243 2707.289679 1794.164222 1723.586686 1.135957443 1.246955779 1.328229965 1.24229643 1.360017425 1.025211735 1.204464075 1.570730211 1.040948063 1 10.75119814 -7.788760842 0.698431684 1.017945492 1.282445142 0.392596699 0.130657793 0.441777262 0.479188225 0.043559074 0.035683533 1.63E-08 7.788760842 0.26449965 TCDSITPSKS(ph)SPVPVSDTQK ddPTM_HeLa_CUDC101_4h_R1 1 TCDSITPSKSSPVPVSDTQK 20 1 Q76FK4-2;Q76FK4-4;Q76FK4;F8WE42;F5H101;F5GWN9 Q76FK4-2 NOL8 Nucleolar protein 8 1 0 TCDSIT(0.001)PS(0.007)KS(0.495)S(0.495)PVPVS(0.001)DTQK 81.639 0.0018429 36571000 2585.9 2664.6 2225.4 2300.5 3113.7 2828.4 2265.1 2474.2 2423.3 1983.3 TRUE FALSE FALSE 2282.784722 2746.693168 2345.711855 2394.324334 2884.008554 2774.452982 2352.465666 2755.852927 2323.410548 1971.503243 1.157890422 1.393197387 1.189808773 1.214466343 1.462847481 1.407277919 1.193234489 1.397843466 1.178496944 1 10.94508037 -7.788300297 0.505516091 1.000344842 1.348086257 0.404702598 0.107936319 0.368796072 0.230526287 0.048240578 0.035864558 1.63E-08 7.788300297 0.347741416 (ac)ADKPDMGEIAS(ph)FDK ddPTM_HeLa_CUDC101_4h_R1 1 ADKPDMGEIASFDK 14 1 P63313 P63313 TMSB10 Thymosin beta-10 1 0 ADKPDMGEIAS(1)FDK 85.536 0.00054648 7465400 2230 1563.7 1782.6 1535.7 1589.2 1857 1592.3 1445.8 1669.1 2289 TRUE FALSE FALSE 1968.60278 1611.875744 1878.972748 1598.332484 1471.967882 1821.580819 1653.715544 1610.384028 1600.298992 2275.384926 0.865173518 0.708396951 0.825782366 0.702444877 0.646909393 0.800559412 0.726784961 0.707741362 0.703309129 1 11.15189491 -7.782466366 0.606862118 0.988257298 0.71610394 0 0.102132764 0.199350286 0.169182715 0.0201266 0.015866453 1.65E-08 7.782466366 -0.272153357 YS(ph)PS(ph)QNSPIHHIPSR ddPTM_HeLa_CUDC101_4h_R1 2 YSPSQNSPIHHIPSR 15 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;H0YF00;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 Y(0.014)S(0.986)PS(0.89)QNS(0.11)PIHHIPSR;Y(0.303)S(0.818)PS(0.754)QNS(0.125)PIHHIPSR ; 144.4 0.0010914 85459000 4573.3 2977.1 2707.88 2528.09 3242.3 3724.7 3039.04 2668.85 3908.9 5070.4 TRUE FALSE FALSE 4037.224707 3068.820922 2854.276184 2631.196438 3003.121989 3653.657553 3156.256791 2972.661096 3747.773488 5040.241035 0.800998341 0.608863922 0.566297557 0.522037819 0.595829042 0.724897386 0.626211479 0.589785503 0.74357029 1 12.29927701 -7.777157775 0.924511374 0.957841218 0.600728566 0.558328618 0.090175093 0.136080141 0.246901832 0.018761126 0.016679802 1.67E-08 7.777157775 -0.357112653 RGDSES(ph)EEDEQDSEEVR ddPTM_HeLa_CUDC101_4h_R1 1 RGDSESEEDEQDSEEVR 17 1 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 0 RGDS(0.001)ES(0.999)EEDEQDSEEVR 105.57 0.00081971 2676600 551.35 588.86 451.37 697.76 505.39 519.23 429.07 501.53 353.04 435.18 TRUE FALSE FALSE 486.7215888 607.0020786 475.7724275 726.2176688 468.1083866 509.3265528 445.6193736 558.6221479 338.4875418 432.59153 1.125129724 1.40317606 1.099819101 1.678760721 1.082102524 1.177384478 1.030115808 1.291338617 0.782464561 1 8.756861608 -7.775726472 1.642650381 1.038098347 1.243912306 0.284015285 0.196850411 0.37885691 2.130328581 0.036894198 0.035483153 1.68E-08 7.775726472 0.205813959 GIAYIEFK ddPTM_HeLa_CUDC101_4h_R1 1 GIAYIEFK 8 0 P19338;H7BY16 P19338 NCL Nucleolin 0 0 138.9 0.026207 1400800 2973.9 1561 737.84 1849.8 1273.4 1631.7 1700 1123.5 641.32 221.03 FALSE FALSE TRUE 2625.30395 1609.09256 777.7298622 1925.24284 1179.463819 1600.578041 1765.569569 1251.394699 614.8845182 219.7153037 11.94866223 7.323534285 3.539716392 8.762443065 5.368145955 7.284781779 8.035715034 5.695528156 2.79855116 1 7.77949155 -9.599353015 1.411604299 1.018095327 7.810057973 0.461441045 2.226526192 0.279420837 1.003291718 1.774684368 0.415197386 2.52E-10 9.599353015 6.791962646 GIDLLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 GIDLLKK 7 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 0 1 GIDLLK(1)K 86.794 0.036405 1787600 4521.9 2285.3 1717.6 1878.9 3727.8 3520.8 3791.6 2996 3102.8 2455.7 FALSE TRUE FALSE 3991.849737 2355.707384 1810.458651 1955.529663 3452.807621 3453.646606 3937.843282 3337.05253 2974.901271 2441.093387 1.63527121 0.965021411 0.741658906 0.801087608 1.414451261 1.414794954 1.613147331 1.367031899 1.218675732 1 11.25331177 -13.52287863 0.024603057 2.05E-07 2.153062591 0.038518573 0.300954285 6243.303944 12.36567151 763.3759756 381.0270173 3.00E-14 13.52287863 2.153062385 GIDRMLRDQKR ddPTM_HeLa_CUDC101_4h_R1 2 GIDRMLRDQKR 11 3 P38405-2 P38405-2 0 0 ; ; 57.174 0.031413 19180500 9121.2 9254.1 11849.5 11070 10795.7 10001.8 9962.3 9621.4 11048.4 11695.9 FALSE FALSE TRUE 8052.026763 9539.207852 12490.11981 11521.48245 9999.322719 9811.032329 10346.54925 10716.66128 10592.98028 11626.33227 0.692568093 0.820482989 1.07429579 0.990981694 0.860058227 0.843863061 0.889923753 0.9217577 0.911119692 1 13.50510842 GIFLGDDEWR ddPTM_HeLa_CUDC101_4h_R1 1 GIFLGDDEWR 10 0 C9JW01;Q8TB72-2;Q8TB72-3;Q8TB72 C9JW01 PUM2 Pumilio homolog 2 0 0 120.31 0.026404 2620800 2167.4 2001 2031 1770.3 2231.3 1766.5 1875.2 1957.9 2151.7 2228.3 FALSE FALSE TRUE 1913.340658 2062.648438 2140.802003 1842.500486 2066.701444 1732.806956 1947.527092 2180.779422 2063.006015 2215.045972 0.863792753 0.931198929 0.966481974 0.831811397 0.933028691 0.782289387 0.879226488 0.984530095 0.93136036 1 11.11312093 -9.417350453 0.918943298 1.006423099 0.891931383 0.12691396 0.06182894 0.627205218 0.857988318 0.051973622 0.010508826 3.83E-10 9.417350453 -0.114491716 GIFPVLCKDPVQEAWAEDVDLR ddPTM_HeLa_CUDC101_4h_R1 2 GIFPVLCKDPVQEAWAEDVDLR 22 1 P14618;B4DNK4;P14618-3;P14618-2;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 216.16 9.38E-27 499080000 5879.9 5681.9 5306.1 5415.7 6216 5921.7 5198.2 5284.9 5677.8 2352.8 FALSE FALSE TRUE 5190.667035 5856.952604 5592.963816 5636.575655 5757.458064 5808.753439 5398.696315 5886.511654 5443.758681 2338.805441 2.219366752 2.504249606 2.391376263 2.41002332 2.461708855 2.483641152 2.308313561 2.51688813 2.327580818 1 11.19155614 -8.914893151 0.54010517 0.849955093 2.467457314 0.076769437 0.41352426 0.114397164 0.056432247 0.091538549 0.022595839 1.22E-09 8.914893151 1.617502221 S(ph)APAS(ph)PTHPGLMSPR ddPTM_HeLa_CUDC101_4h_R1 1 SAPASPTHPGLMSPR 15 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 2 0 S(0.994)APAS(0.979)PT(0.027)HPGLMSPR 73.76 0.032688 58181000 1406.6 1235.9 950.74 912.28 1406.4 1228.9 1031.5 1185.3 1171.4 1368.2 TRUE FALSE FALSE 1241.72048 1273.976614 1002.13988 949.4867216 1302.652674 1205.46078 1071.285301 1320.229761 1123.114396 1360.061886 0.91298822 0.936704886 0.73683403 0.698120234 0.957789265 0.886327889 0.787673937 0.970713006 0.825781833 1 10.40945658 -7.774726502 0.94058626 0.979800309 0.845085676 0 0.099302282 0.445902073 0.835776361 0.023260665 0.020786568 1.68E-08 7.774726502 -0.134714632 GIGQK(ac)LLQK ddPTM_HeLa_CUDC101_4h_R1 1 GIGQKLLQK 9 1 Q9UBB9 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 0 1 GIGQK(1)LLQK 119.29 0.0014623 307880 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 NAMS(ph)LPQLNEK ddPTM_HeLa_CUDC101_4h_R1 3 NAMSLPQLNEK 11 0 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 NAMS(1)LPQLNEK;NAMS(1)LPQLNEK;NAMS(1)LPQLNEK ;; 137.81 0.001531 93408000 9228.4 7593 7870.8 7447.6 7509.9 7848 7343.6 6831.6 8216 8895 TRUE FALSE FALSE 8146.660941 7826.93133 8296.319256 7751.345319 6955.909639 7698.312476 7626.845112 7609.28173 7877.333002 8842.092144 0.921349926 0.885189976 0.938275594 0.876641545 0.786681424 0.870643774 0.862561144 0.860574806 0.890890173 1 13.11017205 -7.774305252 0.337619089 1.013078494 0.837869399 0.28357997 0.045010458 0.489890542 0.1644434 0.033600133 0.023799814 1.68E-08 7.774305252 -0.175209095 LSGINEIPRPFS(ph)PPVTSNT(ph)SPPPAAPLAR ddPTM_HeLa_CUDC101_4h_R1 1 LSGINEIPRPFSPPVTSNTSPPPAAPLAR 29 1 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 2 0 LSGINEIPRPFS(0.963)PPVT(0.327)S(0.145)NT(0.349)S(0.216)PPPAAPLAR 67.61 0.00037979 20148000 2340.5 2162.7 1526.4 1700 1705.1 1747.1 1676.5 1593.9 2393.2 2546.5 TRUE FALSE FALSE 2066.150138 2229.330224 1608.921801 1769.333348 1579.31817 1713.776978 1741.163167 1775.343133 2294.551283 2531.353305 0.816223533 0.880687109 0.635597488 0.698967364 0.623902703 0.677020065 0.687838858 0.701341504 0.906452402 1 11.30569317 -7.771181848 0.436037737 1.001367209 0.652590266 0.767384369 0.059060558 0.26983615 0.133379684 0.035744352 0.026101054 1.69E-08 7.771181848 -0.348776943 RAVDGFT(ph)FT(ph)EGDK ddPTM_HeLa_CUDC101_4h_R1 1 RAVDGFTFTEGDK 13 1 H9KV31;O15394-2;O15394 H9KV31 NCAM2 Neural cell adhesion molecule 2 2 0 RAVDGFT(1)FT(1)EGDK 75.102 0.029349 3120500 2250.4 2165.6 1619.5 1866.5 1723 1640.1 1523.1 1752.2 2163.8 2413.1 TRUE FALSE FALSE 1986.611523 2232.319569 1707.055069 1942.623938 1595.897723 1608.817825 1581.846477 1951.663365 2074.607248 2398.746774 0.828187262 0.930619102 0.71164455 0.809849526 0.665304792 0.67069098 0.659447047 0.813617922 0.864871303 1 11.22806515 -7.768774986 0.295794603 1.03521637 0.668437877 0.505873274 0.07845362 0.64476226 0.179507076 0.093535362 0.066696312 1.70E-08 7.768774986 -0.366778493 TSELLSGMGVSALEKEEPDSENIPQELLSNLGHPES(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 3 TSELLSGMGVSALEKEEPDSENIPQELLSNLGHPESPPR 39 1 D6RF40;D6RAG5;D6R9R7;A0A0A0MTL5;Q13309-2;Q13309 D6RF40 SKP2 S-phase kinase-associated protein 2 1 0 TSELLSGMGVSALEKEEPDSENIPQELLS(0.02)NLGHPES(0.98)PPR;TSELLSGMGVSALEKEEPDS(0.001)ENIPQELLS(0.189)NLGHPES(0.81)PPR;TSELLSGMGVSALEKEEPDSENIPQELLS(0.211)NLGHPES(0.789)PPR ;; 88.782 9.16E-12 44591300 1775.77 1189.49 1233.39 1093.1 2124.64 1353.23 1573.7 1473.6 1612.03 1704.45 TRUE FALSE FALSE 1567.616932 1226.136777 1300.070794 1137.681343 1967.90954 1327.419392 1634.398136 1641.348668 1545.581441 1694.311856 0.925223375 0.723678332 0.767314937 0.671471039 1.161480122 0.783456356 0.964638317 0.968740591 0.912217805 1 10.72648373 -7.767980567 2.305097805 0.97446449 0.863642181 0.061593036 0.137366346 0.438868972 4.85183673 0.026877867 0.026454096 1.71E-08 7.767980567 -0.11082231 VALS(ph)DDETKETENMR ddPTM_HeLa_CUDC101_4h_R1 4 VALSDDETKETENMR 15 1 H0YD46;Q15054-3;Q15054-2;Q15054 H0YD46 POLD3 DNA polymerase delta subunit 3 1 0 VALS(0.998)DDET(0.002)KETENMR;VALS(1)DDETKETENMR;VALS(1)DDETKETENMR;VALS(0.998)DDET(0.002)KETENMR ;;; 272.72 4.65E-85 1248050000 18775.4 15349.6 15368.2 15215.3 16709.6 15168.1 15707.2 14136.4 16916.3 17604.5 TRUE FALSE FALSE 16574.57607 15822.50298 16199.05138 15835.8457 15476.9661 14878.79376 16313.03197 15745.63063 16219.00295 17499.78765 0.947130125 0.904153999 0.925671311 0.904916449 0.884408794 0.850227103 0.932184567 0.89976124 0.926811415 1 14.0950498 -7.766927952 0.521982879 0.997834714 0.890649192 0.375863584 0.02990119 0.258877031 0.170719109 0.01031495 0.00788517 1.71E-08 7.766927952 -0.107185521 IHLGSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 IHLGSSPK 8 0 Q9H410-4;Q9H410;Q5JW53 Q9H410-4 DSN1 Kinetochore-associated protein DSN1 homolog 1 0 IHLGS(0.158)S(0.842)PK;IHLGS(0.442)S(0.558)PK ; 135.55 0.0031924 318380000 16521 12201.4 12443.1 12063.3 15886.9 13498.5 14246.7 14368.2 15172.7 15551.9 TRUE FALSE FALSE 14584.43342 12577.31067 13115.81162 12555.29352 14714.95504 13241.0386 14796.19999 16003.81781 14547.27488 15459.39661 0.943402501 0.813570606 0.848403852 0.812146414 0.951845367 0.856504231 0.957100744 1.0352162 0.940998879 1 13.91619639 -7.766579894 2.042689709 0.981279644 0.894487937 0.144291259 0.06860617 0.313295885 2.725083358 0.01417728 0.013876579 1.71E-08 7.766579894 -0.086791707 DNQESS(ph)DAELSSSEYIK ddPTM_HeLa_CUDC101_4h_R1 3 DNQESSDAELSSSEYIK 17 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 DNQES(0.008)S(0.962)DAELS(0.028)S(0.002)SEYIK;DNQES(0.027)S(0.973)DAELSSSEYIK;DNQES(0.03)S(0.97)DAELSSSEYIK ;; 264.66 1.89E-70 113794000 10791.6 8739 8232.3 8142.1 8722.1 8617.4 8779.7 9600.6 10602.9 10314.1 TRUE FALSE FALSE 9526.625007 9008.238232 8677.363039 8474.170031 8078.68806 8453.037453 9118.33597 10693.4935 10165.84397 10252.75127 0.929177423 0.878616675 0.84634483 0.826526442 0.787953189 0.82446528 0.889355035 1.042987703 0.991523514 1 13.32372348 -7.764429274 0.986845149 0.983501813 0.862858108 0.352588158 0.065739107 0.3711801 0.761842686 0.017477092 0.015863352 1.72E-08 7.764429274 -0.120643706 TLENSPISSCDT(ph)SDTEGPVPVNSAAVLKK ddPTM_HeLa_CUDC101_4h_R1 1 TLENSPISSCDTSDTEGPVPVNSAAVLKK 29 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 TLENSPIS(0.001)S(0.019)CDT(0.327)S(0.327)DT(0.327)EGPVPVNSAAVLKK 118.9 1.93E-12 35852000 1962.8 1736.3 2009.7 1694.5 2417.7 1988.2 2251.8 2691.9 2216.5 730.24 TRUE FALSE FALSE 1732.723559 1789.793345 2118.350461 1763.609034 2239.351088 1950.278398 2338.65268 2998.335015 2125.134932 725.8965 2.387011867 2.465631595 2.918254133 2.429559909 3.084945426 2.686716905 3.221743982 4.130526893 2.927600466 1 9.50362005 -7.760335913 0.163561831 2.22E-20 4.31775731 0.25626026 0.649733779 1.110671092 0.145332436 1.910743015 1.486293929 1.74E-08 7.760335913 4.31775731 GILAADESTGSIAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 GILAADESTGSIAKR 15 1 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 1 GILAADESTGSIAK(1)R 101.39 0.01462 31390000 414.16 182.33 214.21 460.04 494.94 578.06 753.7 353.29 310.65 234.31 FALSE TRUE FALSE 365.6127926 187.9473712 225.7908405 478.8024197 458.4292623 567.0344686 782.7704615 393.5071056 297.8448755 232.9163137 1.56971741 0.806930902 0.969407582 2.055684345 1.968214484 2.434498724 3.360736949 1.689478505 1.278763479 1 7.863667881 -5.850751428 1.626919814 1.217362053 2.54017128 0.620482793 0.457292631 0.183644456 0.981551888 0.071673601 0.161215357 1.41E-06 5.850751428 1.322809227 GILADEDSSRPVWLK ddPTM_HeLa_CUDC101_4h_R1 1 GILADEDSSRPVWLK 15 1 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 96.23 0.0013116 0 1316.1 1108.3 1171.7 1173.5 820.65 943.35 938.43 1325.9 1386.2 1123.9 FALSE FALSE TRUE 1161.828753 1142.445409 1235.045646 1221.360402 760.1122845 925.3571705 974.6255595 1476.835097 1329.060249 1117.214993 1.039933012 1.022583314 1.105468199 1.093218772 0.680363484 0.82827135 0.872370641 1.321889794 1.18961906 1 10.12569112 GILFVGSGVSGGEEGAR ddPTM_HeLa_CUDC101_4h_R1 1 GILFVGSGVSGGEEGAR 17 0 P52209-2;P52209;K7EMN2;K7EM49;K7EPF6 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 0 154.36 0.006082 536120 270.81 265.41 249.51 200.08 327.92 187.4 265.47 230.06 223.97 305.49 FALSE FALSE TRUE 239.0660623 273.5869675 262.9992653 208.2401272 303.7299949 183.8256572 275.7092668 256.2491005 214.7378618 303.6729319 0.787248507 0.90092642 0.866060942 0.685738192 1.000187909 0.605340937 0.907915187 0.843832537 0.70713534 1 8.246374508 -9.399847434 0.796663411 1.017534639 0.821341044 0 0.140598767 0.799233168 0.77140872 0.104985638 0.018955027 3.98E-10 9.399847434 -0.196193595 GILIGIQQSFRPR ddPTM_HeLa_CUDC101_4h_R1 1 GILIGIQQSFRPR 13 1 P31327-2;P31327;P31327-3 P31327-2 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" 0 0 167.11 3.73E-05 1349400 625.51 469.47 265.69 530.27 479.71 335 281.45 234.66 285.88 0 FALSE FALSE TRUE 552.188666 483.9338142 280.0540051 551.8967026 444.322749 328.6104331 292.3056208 261.3727459 274.0959054 0 0 GILLFGPPGTGK ddPTM_HeLa_CUDC101_4h_R1 1 GILLFGPPGTGK 12 0 O75351;I3L4J1;Q9UN37;Q6PIW4-2;Q6PIW4 O75351;I3L4J1;Q6PIW4-2 VPS4B;VPS4A;FIGNL1 Vacuolar protein sorting-associated protein 4B;Vacuolar protein sorting-associated protein 4A;Fidgetin-like protein 1 0 0 108.67 0.038085 0 0 0 0 0 126.77 59.82 0 167.88 181.17 154.52 FALSE FALSE TRUE 0 0 0 0 117.4184297 58.67903317 0 186.9907806 173.7020959 153.6009082 0 0 0 0 0.764438382 0.382022697 0 1.217380697 1.130866334 1 7.263042936 -9.410514414 1.155137635 0.997193742 0.251875844 0.367458404 0.395344585 0.439135008 1.054144236 0.258738142 0.066589549 3.89E-10 9.410514414 -0.745317899 GILLQLFGGTRK ddPTM_HeLa_CUDC101_4h_R1 1 GILLQLFGGTRK 12 1 A0A3B3IT92;P33991;A0A3B3ITP6;A0A3B3IS57;A0A3B3IU45;E5RG31;A0A3B3IRR8 A0A3B3IT92 MCM4 DNA replication licensing factor MCM4 0 0 77.387 0.039503 0 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 MLAESDES(ph)GDEESVSQTDKTELQNTLR ddPTM_HeLa_CUDC101_4h_R1 1 MLAESDESGDEESVSQTDKTELQNTLR 27 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 MLAES(0.014)DES(0.971)GDEES(0.014)VSQTDKTELQNTLR 107.56 4.51E-08 30167000 1202.5 1213.3 1336.4 1079.6 1589.1 1167.3 902.95 1114.2 1086.7 899.43 TRUE FALSE FALSE 1061.544773 1250.680335 1408.649826 1123.630754 1471.875259 1145.035697 937.777084 1241.036024 1041.905766 894.0801504 1.187303814 1.39884588 1.575529695 1.256744995 1.646245315 1.280685738 1.04887362 1.388059028 1.165338215 1 9.804260358 -7.758705061 1.315980109 1.052417618 1.366305649 0.322057044 0.164508951 0.277802626 1.001768841 0.037365591 0.035485074 1.74E-08 7.758705061 0.313888032 AFHAALRNS(ph)PVNTK ddPTM_HeLa_CUDC101_4h_R1 2 AFHAALRNSPVNTK 14 1 Q9BPX5 Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein 1 0 AFHAALRNS(0.937)PVNT(0.063)K;AFHAALRNS(0.985)PVNT(0.015)K ; 86.777 0.010195 117973000 6538.7 6084.7 5908.5 5924.7 6879.7 5969.9 5558.3 6295.1 5768.2 5401 TRUE FALSE FALSE 5772.243498 6272.162395 6227.931382 6166.334875 6372.198237 5856.034104 5772.685493 7011.708738 5530.432355 5368.874612 1.075130994 1.168245275 1.16000686 1.14853397 1.186877828 1.090737729 1.075213319 1.305992269 1.030091547 1 12.390404 -7.757928031 0.849402551 1.014124751 1.159638604 0.482585098 0.060610731 0.299472971 0.462678247 0.016399196 0.014472741 1.75E-08 7.757928031 0.145513853 GIPGLDVEDDEEGGGGAP ddPTM_HeLa_CUDC101_4h_R1 2 GIPGLDVEDDEEGGGGAP 18 0 Q9ULX6-2;Q9ULX6 Q9ULX6-2 AKAP8L A-kinase anchor protein 8-like 0 0 ; ; 196.27 6.23E-16 21385000 8397.7 6610.6 6645.7 6313.6 7492 7948.3 7033.2 6908.6 7865.5 7593.4 FALSE FALSE TRUE 7413.334336 6814.264751 7004.986644 6571.095898 6939.330086 7796.69942 7304.47288 7695.047098 7541.280761 7548.234119 0.982128299 0.902762771 0.928029859 0.870547441 0.919331592 1.03291701 0.96770619 1.019449977 0.99907881 1 12.88192346 -7.481867959 13.08490546 0.992122399 0.947342017 0.164302394 0.047000058 2.826496693 901.1093599 0.008562055 0.009629495 3.30E-08 7.481867959 -0.044780382 GIPHLVTHDAR ddPTM_HeLa_CUDC101_4h_R1 2 GIPHLVTHDAR 11 0 C9JEH7;Q8TD47;P62701;P22090 C9JEH7 RPS4Y1;RPS4Y2;RPS4X "40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1" 0 0 ; ; 191.4 1.78E-11 45205000 19745.6 15850.4 12343.6 15786.5 14492 16212.2 13203.4 13026.6 11192.7 8770.3 FALSE FALSE TRUE 17431.0507 16338.73204 13010.93235 16430.34171 13422.95403 15902.9793 13712.65956 14509.49549 10731.33217 8718.133866 1.999401589 1.874108873 1.492398781 1.884616818 1.539659087 1.824126532 1.57288931 1.664289137 1.230920784 1 13.08980364 -9.419526739 1.123874652 0.996135262 1.748273485 0.668789886 0.170871216 0.20311046 0.455137523 0.120187089 0.029700489 3.81E-10 9.419526739 0.752138222 KMT(ph)S(ph)NSPR ddPTM_HeLa_CUDC101_4h_R1 2 KMTSNSPR 8 1 O60224-2 O60224-2 2 0 KMT(1)S(1)NS(0.001)PR;KMT(0.997)S(0.997)NS(0.006)PR ; 82.241 0.021083 25971000 8353.3 8329.4 7751.8 8097.6 8471.7 7854.4 7973.6 7868.8 8500.3 6630.7 TRUE FALSE FALSE 7374.138837 8586.018941 8170.885756 8427.855129 7846.759569 7704.590406 8281.144423 8764.552385 8149.914036 6591.260302 1.118775242 1.302636908 1.23965454 1.278640919 1.190479394 1.16891005 1.25638255 1.329723298 1.236472793 1 12.68633863 -7.757534568 1.095172421 1.02890241 1.248461124 0.177049345 0.084030628 0.155270516 0.38962359 0.013678713 0.012688536 1.75E-08 7.757534568 0.219558714 ATS(ph)DEEDSVLNIAR ddPTM_HeLa_CUDC101_4h_R1 1 ATSDEEDSVLNIAR 14 0 Q5JPF3-3;Q5JPF3 Q5JPF3-3 ANKRD36C Ankyrin repeat domain-containing protein 36C 1 0 AT(0.007)S(0.993)DEEDSVLNIAR 156.2 7.20E-05 3135400 1286.5 1212.7 684.73 961.78 1156.9 1013.7 1162.2 944.59 1196.8 1284.5 TRUE FALSE FALSE 1135.69842 1250.06185 721.748575 1001.005546 1071.557792 994.3653614 1207.026443 1052.118307 1147.467397 1276.859737 0.889446497 0.979012662 0.565252826 0.783958893 0.839213393 0.778758491 0.945308563 0.823988945 0.898663623 1 10.31838434 -7.757295128 0.907553412 0.974301491 0.809136684 0.209874089 0.10646721 0.448564532 0.784507699 0.028246172 0.025312763 1.75E-08 7.757295128 -0.165164807 GIPNMLLSEEETES ddPTM_HeLa_CUDC101_4h_R1 3 GIPNMLLSEEETES 14 0 F5GYQ2;Q9UI30-2;Q9UI30 F5GYQ2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein 0 0 ;; ;; 175.93 1.27E-06 72359200 11667.5 10169.5 8396.5 8772.3 10893.2 8229.3 8451 9176.1 9505.4 9731.4 FALSE FALSE TRUE 10299.85334 10482.81024 8850.440188 9130.072311 10089.63034 8072.339813 8776.957901 10220.67013 9113.583389 9673.5172 1.064747508 1.083660681 0.9149144 0.943821376 1.043015703 0.834478261 0.907318168 1.056561943 0.942116833 1 13.23982482 -6.75493913 24.99999623 1.035410931 0.946771045 0.19382331 0.070465049 145.1238088 558144.8669 0.01022529 0.014263065 1.76E-07 6.75493913 -0.088639885 METEADAPS(ph)PAPSLGER ddPTM_HeLa_CUDC101_4h_R1 7 METEADAPSPAPSLGER 17 0 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 METEADAPS(0.999)PAPS(0.001)LGER;MET(0.49)EADAPS(0.51)PAPSLGER;MET(0.347)EADAPS(0.652)PAPS(0.001)LGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER;METEADAPS(0.999)PAPS(0.001)LGER ;;;;;; 270.95 6.68E-86 485995600 18263.2 16297.7 14080.29 14683.4 15270.81 17005.4 15976.1 14468.63 17138.4 16884.4 TRUE FALSE FALSE 16122.41538 16799.81282 14841.51307 15282.25252 14144.31277 16681.05033 16592.30353 16115.68035 16431.9479 16783.97084 0.960584092 1.000943876 0.884267091 0.910526637 0.84272744 0.993867928 0.988580336 0.960182814 0.979026242 1 14.03479646 -7.755574639 0.844236532 0.991040999 0.935974637 0.159337774 0.04756268 0.684951982 1.046093479 0.014164186 0.012500978 1.76E-08 7.755574639 -0.055066362 SFS(ph)PTMK ddPTM_HeLa_CUDC101_4h_R1 1 SFSPTMK 7 0 A3KN83-4;A3KN83-3;A3KN83-2;A3KN83 A3KN83-4 SBNO1 Protein strawberry notch homolog 1 1 0 S(0.043)FS(0.938)PT(0.019)MK 101.72 0.019913 57003000 7259.3 5581.9 6211.9 5861.1 5932.1 5599.6 6179.1 5527.1 7138.3 6855.6 TRUE FALSE FALSE 6408.375858 5753.871723 6547.734104 6100.140992 5494.500801 5492.79696 6417.429957 6156.282723 6844.056253 6814.822586 0.940358429 0.84431717 0.960807713 0.895128364 0.80625735 0.80600733 0.941687018 0.903366543 1.004289718 1 12.73446038 -7.755218123 0.600727345 0.994853682 0.871201368 0.486232208 0.049480182 0.445423168 0.371359302 0.020190312 0.016227185 1.76E-08 7.755218123 -0.123652315 GIRDDIEEEDDQEAYFR ddPTM_HeLa_CUDC101_4h_R1 1 GIRDDIEEEDDQEAYFR 17 1 A0A0A0MSJ0;Q86XP3-2;Q86XP3;J3KRE3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 0 0 200.81 1.34E-16 12852000 1082.6 1078.9 1005.1 891.55 1265.1 1031.7 867.32 1207.7 1090.4 726.22 FALSE FALSE TRUE 955.6992691 1112.13963 1059.438746 927.9112626 1171.776093 1012.022041 900.7728229 1345.179686 1045.45325 721.9004111 1.323865805 1.540572097 1.467569113 1.285372952 1.623182471 1.401885947 1.2477799 1.863386785 1.448195948 1 9.495656015 -8.71145555 0.355514428 0.885823881 1.522620866 0.038935302 0.216835446 1.092770693 0.250415624 0.278088805 0.077411701 1.94E-09 8.71145555 0.636796985 LMHNAS(ph)DS(ph)EVDQDDVVEWK ddPTM_HeLa_CUDC101_4h_R1 2 LMHNASDSEVDQDDVVEWK 19 0 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 2 0 LMHNAS(1)DS(1)EVDQDDVVEWK;LMHNAS(1)DS(1)EVDQDDVVEWK ; 87.419 0.013573 16944900 6473.6 5173.9 4280.5 4586.2 5342.9 5785.4 5356.3 5162.4 5959.5 6313.3 TRUE FALSE FALSE 5714.774421 5333.301726 4511.916778 4773.245059 4948.764912 5675.053134 5562.894285 5750.066749 5713.846888 6275.748211 0.910612445 0.849827231 0.718944838 0.760585814 0.78855377 0.904283114 0.886411325 0.91623605 0.910464648 1 12.61557176 -7.751891049 1.241219323 0.975384705 0.82939593 0.358088568 0.064746309 0.261438891 0.838848115 0.015953607 0.0150986 1.77E-08 7.751891049 -0.145988774 SYSSSSS(ph)SPER ddPTM_HeLa_CUDC101_4h_R1 1 SYSSSSSSPER 11 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 SYSS(0.001)S(0.025)S(0.056)S(0.459)S(0.459)PER 83.081 0.034596 30141000 3267.5 2119.6 2967.5 2696.2 2474.7 2195 2278.6 1618.7 3485.9 3663.6 TRUE FALSE FALSE 2884.488603 2184.902364 3127.932026 2806.16269 2292.146311 2153.134032 2366.486365 1802.966265 3342.209727 3641.808744 0.792048349 0.599949782 0.858895194 0.770540928 0.629397772 0.591226553 0.649810721 0.495074396 0.917733456 1 11.83043944 -7.750681579 0.07318389 1.619358101 5.86E-12 0.728328082 0.080437423 6.911180585 0.377074756 4.315414046 3.812192826 1.78E-08 7.750681579 -1.619358101 S(ph)PESDRPR ddPTM_HeLa_CUDC101_4h_R1 1 SPESDRPR 8 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 S(0.997)PES(0.003)DRPR 67.334 0.039712 2900900 402.15 97.63 329.83 310.4 145.13 183.36 179.35 212.38 397.14 469.88 TRUE FALSE FALSE 355.0105866 100.6378646 347.6616075 323.0594537 134.424049 179.8627135 186.2675896 236.5564807 380.7697211 467.0851329 0.76005542 0.215459362 0.744321716 0.691650046 0.287793465 0.385074799 0.398787237 0.506452602 0.815204112 1 8.867541715 -7.750381516 0.496563623 1.007026637 0.413538216 0.490401677 0.174586026 0.39028031 0.237511908 0.085933799 0.065821775 1.78E-08 7.750381516 -0.593488421 EGEEPTVYS(ph)DEEEPKDESAR ddPTM_HeLa_CUDC101_4h_R1 4 EGEEPTVYSDEEEPKDESAR 20 1 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 EGEEPT(0.001)VYS(0.999)DEEEPKDESAR;EGEEPTVYS(1)DEEEPKDESAR;EGEEPT(0.001)VYS(0.999)DEEEPKDESAR;EGEEPTVYS(0.999)DEEEPKDESAR ;;; 187.59 3.80E-12 1015879000 17171.5 14031.6 11747.9 14283 11282.7 12792.7 11201.7 11356.2 12344.2 18555.1 TRUE FALSE FALSE 15158.6828 14463.89696 12383.02701 14865.52248 10450.3977 12548.70056 11633.75332 12648.9439 11835.36685 18444.73344 0.821843419 0.784174898 0.671358415 0.805949434 0.56657895 0.680340575 0.630735779 0.68577537 0.641666462 1 14.17092132 -7.748587574 0.352550943 1.026869296 0.621308368 0 0.122877573 0.311870334 0.112279721 0.049004852 0.035639362 1.78E-08 7.748587574 -0.405560928 GISAGAVQTAGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 GISAGAVQTAGKK 13 1 P46087;P46087-4;F5GWB7;F5H709 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 0 1 GISAGAVQTAGK(1)K 200.93 1.53E-11 1254000 467.94 695.23 682.02 607.9 670.43 754.43 794.91 700.25 280.31 440.89 FALSE TRUE FALSE 413.0887826 716.6492122 718.8920642 632.6927896 620.9737146 740.0405047 825.569945 779.9636295 268.7555032 438.2675667 0.942549287 1.635186509 1.640304049 1.443622202 1.416882658 1.688558682 1.883712161 1.779651721 0.613222432 1 8.775668108 -7.259791982 24.79601498 0.972870488 1.636032084 0.807760385 0.17343592 37.66532098 566925.6853 0.024475349 0.029147567 5.50E-08 7.259791982 0.663161597 GISHVIVDEIHER ddPTM_HeLa_CUDC101_4h_R1 4 GISHVIVDEIHER 13 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 ;;; ;;; 177.83 1.04E-07 65316600 23205.3 19210.1 18673.8 19462.7 21308 20752.6 19544.4 16819.1 20117 22008.4 FALSE FALSE TRUE 20485.20991 19801.94041 19683.36211 20256.47303 19736.15129 20356.77873 20298.23405 18733.71836 19287.76875 21877.49306 0.936360023 0.905128406 0.899708301 0.925904672 0.902121246 0.930489553 0.92781353 0.856300962 0.881626094 1 14.41715981 -8.538654337 0.468027228 1.008235452 0.904316046 0 0.041969568 0.418818208 0.18308057 0.01943341 0.006752495 2.89E-09 8.538654337 -0.103919406 GISQEQMQEFR ddPTM_HeLa_CUDC101_4h_R1 4 GISQEQMQEFR 11 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ;;; ;;; 229.73 1.51E-32 249111000 6077.5 4794.22 4921.7 5110.6 5010.12 5228.6 4939.56 4924.67 4897.5 4399.31 FALSE FALSE TRUE 5365.104663 4941.924236 5187.781989 5319.032358 4640.533429 5128.873166 5130.080484 5485.274527 4695.622977 4373.142708 1.226830456 1.130062421 1.186282345 1.216295171 1.061143836 1.172811753 1.173087829 1.254309519 1.073741081 1 12.09445471 -9.391734214 1.011044137 0.995478058 1.177626038 0.495618357 0.055082127 0.292469274 0.513208668 0.039783876 0.009212611 4.06E-10 9.391734214 0.18214798 ARS(ph)MDSSDLSDGAVTLQEYLELKK ddPTM_HeLa_CUDC101_4h_R1 3 ARSMDSSDLSDGAVTLQEYLELKK 24 2 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 ARS(0.389)MDS(0.299)S(0.299)DLS(0.013)DGAVTLQEYLELKK;ARS(0.859)MDS(0.069)S(0.069)DLS(0.003)DGAVTLQEYLELKK;ARS(0.953)MDS(0.019)S(0.028)DLSDGAVTLQEYLELKK ;; 129.32 3.76E-09 83162000 7280.37 7103.88 7284.31 7041.65 9359.15 7239.01 7228.34 6186.52 7766.86 5345.7 TRUE FALSE FALSE 6426.976065 7322.742123 7678.121832 7328.838924 8668.744151 7100.937945 7507.139495 6890.76843 7446.706743 5313.903539 1.209464195 1.378034447 1.444911782 1.379181777 1.631332614 1.3362941 1.412735373 1.296743228 1.4013628 1 12.37555632 -7.741915032 0.800197914 1.038514122 1.42878701 0.131655942 0.144851616 0.184017751 0.254302604 0.026578756 0.023362856 1.81E-08 7.741915032 0.390272888 LYDSS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 LYDSSPSR 8 0 E9PP00;Q9C0D7;Q9C0D7-2 E9PP00 ZC3H12C Probable ribonuclease ZC3H12C 1 0 LYDS(0.134)S(0.866)PSR 106.68 0.013127 11594000 2607.8 2203 2114.9 2066.8 2349.3 2075.8 1954.4 2181 2628.8 2489.4 TRUE FALSE FALSE 2302.117637 2270.871819 2229.237891 2151.093037 2175.996819 2036.207574 2029.781863 2429.276224 2520.439751 2474.592938 0.930301546 0.917674897 0.900850341 0.869271469 0.879335258 0.822845464 0.82024879 0.981687205 1.018527012 1 11.27297551 -7.740884953 0.479767042 0.997588454 0.865080615 0.564088686 0.043623695 0.452754423 0.260926246 0.022258603 0.01705806 1.82E-08 7.740884953 -0.132507838 KSYES(ph)SEDCSEAAGSPAR ddPTM_HeLa_CUDC101_4h_R1 2 KSYESSEDCSEAAGSPAR 18 1 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 KS(0.124)YES(0.719)S(0.148)EDCS(0.009)EAAGSPAR;KS(0.003)YES(0.787)S(0.183)EDCS(0.026)EAAGS(0.001)PAR ; 102.19 0.00087943 43524000 3743.9 3573 4059.2 3887.3 3868.4 3155 3584.2 4046.7 3733.6 2797.3 TRUE FALSE FALSE 3305.045717 3683.079895 4278.65263 4045.840896 3583.035839 3094.823632 3722.443795 4507.359971 3579.699428 2780.661535 1.188582528 1.324533694 1.538717523 1.454992219 1.288555185 1.112981063 1.338690001 1.620966778 1.287355323 1 11.44121243 -7.737772428 1.038471015 1.045910543 1.377346529 0.249305573 0.155328218 0.275972768 0.623294835 0.035817123 0.033294954 1.83E-08 7.737772428 0.331435987 PQSQPPHSS(ph)PSPR ddPTM_HeLa_CUDC101_4h_R1 2 PQSQPPHSSPSPR 13 0 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 1 0 PQSQPPHS(0.147)S(0.766)PS(0.087)PR;PQSQPPHS(0.099)S(0.896)PS(0.004)PR ; 91.14 0.010761 1883540 1193.73 639.47 994.63 718.22 717.17 825.55 597.8 640.57 869.08 1363.56 TRUE FALSE FALSE 1053.802779 659.1713127 1048.402706 747.512116 664.2657979 809.8040092 620.8573462 713.4898995 833.2561546 1355.449484 0.777456328 0.486311973 0.773472356 0.551486518 0.490070494 0.59744315 0.458045359 0.526386197 0.614745266 1 10.40455563 -7.736240393 0.394933908 1.027436192 0.483811495 0.210916765 0.145192129 0.294709308 0.12582799 0.060926613 0.045297419 1.84E-08 7.736240393 -0.543624697 MGANS(ph)LER ddPTM_HeLa_CUDC101_4h_R1 1 MGANSLER 8 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7;M0QY96 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 MGANS(1)LER 87.667 0.014986 16272000 6755 5133 5306.4 5155.1 5604 5583.3 5195.9 5389.8 5938.8 6458.3 TRUE FALSE FALSE 5963.18914 5291.141646 5593.280035 5365.34726 5190.604085 5476.807855 5396.307604 6003.353046 5694.00015 6419.885744 0.928862191 0.824180033 0.871242925 0.835738746 0.808519698 0.853100518 0.840561315 0.935118363 0.886931696 1 12.64833191 -7.736227914 1.022747052 0.983383322 0.849001451 0.318058879 0.046997113 0.170973481 0.374867764 0.008951331 0.008306998 1.84E-08 7.736227914 -0.134381871 GITINAAHVEYSTAAR ddPTM_HeLa_CUDC101_4h_R1 2 GITINAAHVEYSTAAR 16 0 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 ; ; 105.53 0.0067208 6021800 2379.3 1951.38 1761.36 1928.5 2514.6 2383.9 1969.58 1726.89 2291.8 1603.05 FALSE FALSE TRUE 2100.402061 2011.499705 1856.584449 2007.152566 2329.102968 2338.431079 2045.54736 1923.472177 2197.331034 1593.514987 1.318093697 1.2623036 1.165087536 1.259575581 1.461613469 1.467467264 1.283669985 1.207062496 1.378920846 1 10.63799687 -10.02842367 0.365196978 0.776194069 1.33145757 0 0.151169386 2.525962332 0.286500253 0.594274246 0.036342126 9.37E-11 10.02842367 0.5552635 GIVEFASK(ac)PAAR ddPTM_HeLa_CUDC101_4h_R1 1 GIVEFASKPAAR 12 1 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 1 GIVEFASK(1)PAAR 175.49 1.27E-06 5297200 1800.4 1069.7 885.48 936.81 1900.4 1525.4 1658.7 1525.4 1749 995.69 FALSE TRUE FALSE 1589.359841 1102.656189 933.3517272 975.017161 1760.211278 1496.305536 1722.676615 1699.04537 1676.90548 989.7675916 1.60579095 1.114055662 0.943000898 0.985097077 1.778408682 1.511774632 1.740485978 1.716610429 1.694241652 1 9.950945994 -1.000000002 0.290404088 1.203607754 6.249405487 0.236346121 0.292811852 48.70969238 0.622581544 0.124369387 128.0087454 0.099999999 1.000000002 5.045797733 GIVEFSGK(ac)PAAR ddPTM_HeLa_CUDC101_4h_R1 2 GIVEFSGKPAAR 12 1 Q15233;Q15233-2;H7C367;C9IZL7 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 1 ; GIVEFSGK(1)PAAR;GIVEFSGK(1)PAAR 155.26 4.18E-05 120692000 5145.1 4273.8 3900.3 4769 4892.2 4423.2 4698.3 5008.1 4509.3 3821.3 FALSE TRUE FALSE 4541.999177 4405.470712 4111.162016 4963.500433 4531.312153 4338.83483 4879.515005 5578.201861 4323.424745 3798.570738 1.195712675 1.159770613 1.082291814 1.306675794 1.192899242 1.142228256 1.284566049 1.468500193 1.138171445 1 11.89124097 -1 0.05308466 0.615263493 2.33347938 0.496608617 0.08782952 205.3747334 0.829039967 6.13204297 28.49204365 0.1 1 1.718215887 GIVGVENVAELK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 GIVGVENVAELKK 13 1 E9PK47;P06737-2;P06737 E9PK47 PYGL "Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, liver form" 0 1 GIVGVENVAELK(1)K 128.01 0.0019482 327900 129.63 0 0 72.125 0 0 0 132.45 80.852 0 FALSE TRUE FALSE 114.4349679 0 0 75.06656925 0 0 0 147.5275726 77.51924634 0 0 SGTPTQDEMMDKPT(ph)SSSVDTMSLLSK ddPTM_HeLa_CUDC101_4h_R1 1 SGTPTQDEMMDKPTSSSVDTMSLLSK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 S(0.01)GT(0.196)PT(0.117)QDEMMDKPT(0.171)S(0.171)S(0.171)S(0.129)VDT(0.024)MS(0.009)LLS(0.001)K 51.554 0.019238 19745000 1684.9 1227 1016 1310.4 1388.6 1364.7 1094.7 1407.7 1296.9 1700.8 TRUE FALSE FALSE 1487.398576 1264.802416 1070.928033 1363.843776 1286.165744 1338.670621 1136.922946 1567.946878 1243.441233 1690.683566 0.879761657 0.748101207 0.633429019 0.806681867 0.760737119 0.791792532 0.672463475 0.927404104 0.735466564 1 10.72339095 -7.734159135 1.254779477 0.966923081 0.758177122 0.003934837 0.106990461 0.199197102 0.651972491 0.017328775 0.01656309 1.84E-08 7.734159135 -0.208745958 GIWHNDNK ddPTM_HeLa_CUDC101_4h_R1 2 GIWHNDNK 8 0 P12277;H0YJG0;P06732 P12277 CKB;CKM "Creatine kinase B-type;Creatine kinase M-type;Creatine kinase M-type, N-terminally processed" 0 0 ; ; 118.74 0.0071185 36146000 12463.4 7768 13850.6 13200.8 9895.2 8902.3 10745.2 6292.3 12957.8 15241.6 FALSE FALSE TRUE 11002.45915 8007.322873 14599.40533 13739.18568 9165.25081 8732.50346 11159.64596 7008.589998 12423.674 15150.94229 0.72618976 0.528503292 0.963597185 0.906820541 0.604929425 0.57636702 0.736564482 0.46258443 0.819993487 1 13.8871199 -13.52287875 0.099726289 2.02947469 0.456986411 0.293857993 0.149893869 88.61458421 0.659862997 19.12374769 1.277990645 3.00E-14 13.52287875 -1.572488279 LCSS(ph)SSSDTSSR ddPTM_HeLa_CUDC101_4h_R1 1 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LCS(0.047)S(0.602)S(0.346)S(0.004)SDTSSR 196.02 3.91E-16 166800000 3571 2969.1 3589.6 3832.1 3347.7 3609 3861 3175.1 2994.7 2612.4 TRUE FALSE FALSE 3152.412793 3060.574452 3783.664634 3988.389602 3100.746841 3540.164338 4009.920063 3536.54055 2871.257198 2596.861329 1.213931895 1.178566764 1.457014509 1.53585005 1.194036357 1.363247355 1.544141006 1.361851906 1.105664429 1 11.34255326 -7.733697804 0.434831859 0.994543595 1.435928459 0.59452425 0.111870332 0.42366511 0.209466172 0.070086228 0.052999748 1.85E-08 7.733697804 0.441384864 GIYAYGFEK(ac)PSAIQQR ddPTM_HeLa_CUDC101_4h_R1 1 GIYAYGFEKPSAIQQR 16 1 P60842;P60842-2;J3KT12;J3QS69;J3QL43;J3KTB5;J3QR64;Q14240-2;Q14240;E7EQG2;J3QLN6;J3KS25;J3QKZ9;J3KS93;J3KSN7;E7EMV8;F8WE11;E9PBH4;J3QQP0;J3KT04;I3L3H2;P38919 P60842;I3L3H2 EIF4A1;EIF4A2;EIF4A3 "Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed;Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed" 0 1 GIYAYGFEK(1)PSAIQQR 153.75 0.0011732 429680 0 0 0 0 0 0 138.99 0 77.344 0 FALSE TRUE FALSE 0 0 0 0 0 0 144.3508909 0 74.15584758 0 0 GK(ac)FDGAK ddPTM_HeLa_CUDC101_4h_R1 1 GKFDGAK 7 1 O15347;E7ES08;E7EQU1 O15347 HMGB3 High mobility group protein B3 0 1 GK(1)FDGAK 95.099 0.02343 0 11405 12109 12386 12330 12223 12332 12614 12678 9916.5 9948 FALSE TRUE FALSE 10068.12319 12482.06394 13055.62463 12832.87069 11321.33364 12096.78765 13100.52621 14121.21227 9507.737673 9888.828854 1.018130998 1.262238848 1.320239719 1.297713904 1.144860914 1.223278087 1.324780356 1.427996427 0.961462456 1 13.27158396 -7.253164711 4.680305674 1.007673258 1.282768846 0.784797836 0.070193467 0.06734706 4.099018794 0.012184389 0.014499944 5.58E-08 7.253164711 0.275095587 GK(ac)FEDMAK ddPTM_HeLa_CUDC101_4h_R1 1 GKFEDMAK 8 1 P23497;Q5T7C4;P09429;B2RPK0 P23497;Q5T7C4 SP100;HMGB1;HMGB1P1 Nuclear autoantigen Sp-100;High mobility group protein B1;Putative high mobility group protein B1-like 1 0 1 GK(1)FEDMAK 101.65 0.012765 3834100 6817.1 3496.8 2206.3 2804.3 4668.2 4557.2 4282.6 3415.8 3099.9 3050.8 FALSE TRUE FALSE 6018.009872 3604.532263 2325.579252 2918.671475 4323.836186 4470.279003 4447.781317 3804.640865 2972.12081 3032.653706 1.98440391 1.188573643 0.766846293 0.962415019 1.425759947 1.474048618 1.466630136 1.254558296 0.980039628 1 11.56636505 GK(ac)GGK(ac)GLGK(ac)GGAK ddPTM_HeLa_CUDC101_4h_R1 2 GKGGKGLGKGGAK 13 3 P62805 P62805 HIST1H4A Histone H4 0 3 ; GK(1)GGK(1)GLGK(1)GGAK;GK(1)GGK(1)GLGK(1)GGAK 194.17 4.57E-11 752980000 8669.5 9512.1 5112.4 11180.4 7716 10181.7 6801.4 4056 1344.72 1962.55 FALSE TRUE FALSE 7653.274352 9805.156526 5388.791808 11636.38504 7146.806052 9987.501036 7063.732276 4517.718645 1289.290072 1950.876665 3.922992411 5.026025838 2.762241152 5.964695383 3.663381791 5.119493822 3.620798999 2.315737702 0.660877284 1 10.92990686 -8.984395194 0.709883569 0.898921776 4.130563351 0.591257432 1.058564145 0.419436751 0.374602276 0.764398865 0.214981331 1.04E-09 8.984395194 3.231641575 GK(ac)LEAIITPPPAK ddPTM_HeLa_CUDC101_4h_R1 2 GKLEAIITPPPAK 13 1 O75367-2;O75367-3;O75367;D6RCF2 O75367-2 H2AFY Core histone macro-H2A.1;Histone H2A 0 1 ; GK(1)LEAIITPPPAK;GK(1)LEAIITPPPAK 156.69 1.06E-11 0 865.96 669.17 525.09 748.89 726.94 812.22 895.87 510.71 827.01 694.87 FALSE TRUE FALSE 764.4534815 689.7863345 553.4779537 779.4329712 673.3150845 796.7282568 930.424006 568.847162 792.9202978 690.7368823 1.106721678 0.998623864 0.801286232 1.128407924 0.974777953 1.153446815 1.347002064 0.823536685 1.147933921 1 9.431992449 -5.249143521 24.21878192 1.029973002 1.131895883 0.054744762 0.151175516 954.5818695 1880202.896 0.019444423 0.049163715 5.63E-06 5.249143521 0.10192288 GK(ac)LHVLLFK ddPTM_HeLa_CUDC101_4h_R1 1 GKLHVLLFK 9 1 E9PIE3;Q969G5 E9PIE3 PRKCDBP Protein kinase C delta-binding protein 0 1 GK(1)LHVLLFK 53.756 0.039066 0 807.16 543.74 417.44 652.29 757.17 684.24 452.11 416.17 755.66 484.42 FALSE TRUE FALSE 712.5459284 560.4919849 440.0080691 678.8932056 701.3150776 671.189262 469.5480341 463.5451106 724.511375 481.5386483 1.479727392 1.16396054 0.913754422 1.409841574 1.456404548 1.393842975 0.975099373 0.962633243 1.504575754 1 8.911507783 -9.709328358 1.61463697 1.000313464 1.263205457 0 0.258925293 0.589668651 2.779326571 0.162277234 0.03586496 1.95E-10 9.709328358 0.262891992 GK(ac)LWPFIK ddPTM_HeLa_CUDC101_4h_R1 1 GKLWPFIK 8 1 H0Y7W6;B7ZL14;Q96RU3-4;Q96RU3-3;Q96RU3-5;Q96RU3-2;Q96RU3 H0Y7W6;Q96RU3-5 FNBP1 Formin-binding protein 1 0 1 GK(1)LWPFIK 100.15 0.014614 267130 160.8 0 207.76 275.86 329.15 350.21 142.89 232.71 0 0 FALSE TRUE FALSE 141.9512678 0 218.992134 287.1107632 304.8692603 343.5303277 148.4013152 259.2007658 0 0 0 GK(ac)MSSYAFFVQTCR ddPTM_HeLa_CUDC101_4h_R1 4 GKMSSYAFFVQTCR 14 1 Q5T7C4;P09429;B2RPK0;P26583;D6R9A6 Q5T7C4;P26583 HMGB1;HMGB1P1;HMGB2 High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2 0 1 ;;; GK(1)MSSYAFFVQTCR;GK(1)MSSYAFFVQTCR;GK(1)MSSYAFFVQTCR;GK(1)MSSYAFFVQTCR 228.38 8.13E-27 4771300 693.66 574.37 571.027 594.52 734.22 668.38 796.7 416.4 342.15 0 FALSE TRUE FALSE 612.3502263 592.0656589 601.8984469 618.7670953 680.0580534 655.6317651 827.4289859 463.8012929 328.0464322 0 0 GK(ac)VGRPTASK(ac)ASK ddPTM_HeLa_CUDC101_4h_R1 1 GKVGRPTASKASK 13 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 2 GK(1)VGRPTASK(1)ASK 142.95 0.00049757 13169000 1640.3 1854.8 1701.2 5341.7 5039.9 4995.9 4511.9 4580.4 249.08 84.135 FALSE TRUE FALSE 1448.026521 1911.94419 1793.172018 5559.557615 4668.116618 4900.611531 4685.925494 5101.814221 238.812817 83.63456128 17.31373368 22.86069491 21.44056226 66.474404 55.81564065 58.59553104 56.02857745 61.00126722 2.855432172 1 6.386027342 -6.576975023 1.054773576 7.73584019 60.61308197 0.900497099 7.671326653 0.109639897 0.243846381 1.55162514 2.662163071 2.65E-07 6.576975023 52.87724178 GK(ac)YSPTVQTR ddPTM_HeLa_CUDC101_4h_R1 2 GKYSPTVQTR 10 1 O60437;K7EKI8 O60437 PPL Periplakin 0 1 ; GK(1)YSPTVQTR;GK(1)YSPTVQTR 132.88 0.0016812 1901340 0 0 0 0 0 60.19 116.034 62.721 0 0 FALSE TRUE FALSE 0 0 0 0 0 59.04197603 120.5094702 69.86090511 0 0 0 DKPASSMS(ph)DDEMPVLEIPR ddPTM_HeLa_CUDC101_4h_R1 1 DKPASSMSDDEMPVLEIPR 19 1 Q96PN7 Q96PN7 TRERF1 Transcriptional-regulating factor 1 1 0 DKPAS(0.037)S(0.26)MS(0.703)DDEMPVLEIPR 69.084 0.0081307 9847100 2090.1 1605.8 1524.3 1491.2 1853.4 1853.4 1451.6 1285.2 2489 2065.6 TRUE FALSE FALSE 1845.101646 1655.272795 1606.708269 1552.017582 1716.678374 1818.049483 1507.588698 1431.501973 2386.402367 2053.313719 0.898597048 0.806147049 0.782495268 0.755859938 0.836052649 0.885422167 0.734222289 0.697166711 1.162220047 1 11.00373835 -7.732497854 0.531572506 0.997171063 0.770204256 0.684216904 0.074456988 0.302445407 0.205662953 0.025099652 0.019876544 1.85E-08 7.732497854 -0.226966808 LLELTSSYS(ph)PDVSDYK ddPTM_HeLa_CUDC101_4h_R1 2 LLELTSSYSPDVSDYK 16 0 P38432 P38432 COIL Coilin 1 0 LLELTS(0.029)S(0.037)YS(0.929)PDVS(0.005)DYK;LLELT(0.018)S(0.233)S(0.31)Y(0.011)S(0.416)PDVS(0.012)DYK ; 149.44 0.00019091 21210000 4953.6 3820.3 3717.3 3925.3 3945.4 3599 3383.3 4122.2 4220.6 4926.7 TRUE FALSE FALSE 4372.946517 3937.998915 3918.268482 4085.390701 3654.355702 3530.355071 3513.795014 4591.454585 4046.625082 4897.395769 0.892912626 0.804100608 0.800071848 0.834196559 0.746183456 0.720863748 0.717482348 0.937529822 0.826281002 1 12.25779907 -7.731493351 0.615746103 0.98868844 0.774707721 0.186405559 0.079443772 0.293174889 0.254741098 0.022736904 0.01876255 1.86E-08 7.731493351 -0.213980719 GKFGHEFLEFEFRPDGK ddPTM_HeLa_CUDC101_4h_R1 1 GKFGHEFLEFEFRPDGK 17 2 F5H6N1;P61326;Q96A72;P61326-2 F5H6N1 MAGOHB;MAGOH Protein mago nashi homolog;Protein mago nashi homolog 2 0 0 54.898 0.021466 16117000 15256 15867 16781 16626 20520 16516 17496 17429 18681 14924 FALSE FALSE TRUE 13467.71481 16355.84346 17688.23162 17304.08014 19006.28048 16200.98482 18170.82658 19413.04691 17910.96127 14835.23138 0.907819666 1.102500058 1.192312487 1.166417948 1.281158345 1.092061485 1.224842816 1.308577292 1.207326048 1 13.85673981 -7.010184223 2.944196741 0.956698438 1.207415155 0.292224848 0.099554761 0.088914804 1.567844598 0.010752496 0.013893435 9.77E-08 7.010184223 0.250716718 GKGDK(ac)AQIEK ddPTM_HeLa_CUDC101_4h_R1 2 GKGDKAQIEK 10 2 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 ; GKGDK(1)AQIEK;GKGDK(1)AQIEK 131.17 0.0027063 8973200 14068.9 8496.9 8462.8 10564.4 8987 9917.4 8010 7629.1 7701.7 6739.7 FALSE TRUE FALSE 12419.76487 8758.679418 8920.324567 10995.2619 8324.046915 9728.242119 8318.948383 8497.565906 7384.232666 6699.611965 1.853803613 1.3073413 1.331468839 1.641178915 1.24246702 1.452060533 1.241706001 1.268366877 1.102188113 1 12.70986182 -4.753922502 24.08942984 1.407401266 1.255036338 0.011167993 0.236302522 342.7188241 1098268.04 0.043665133 0.156792946 1.76E-05 4.753922502 -0.152364928 LSLKIEPGTS(ph)TPR ddPTM_HeLa_CUDC101_4h_R1 1 LSLKIEPGTSTPR 13 1 Q86X27-3;Q86X27;H7C2H2;A0A0A0MR31 Q86X27-3 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 LSLKIEPGT(0.058)S(0.471)T(0.471)PR 66.267 0.028397 21101000 2380.9 1896.9 2146.9 2003.7 2792.7 2262.4 1951.2 2222.2 2408.1 1871.6 TRUE FALSE FALSE 2101.814511 1955.341241 2262.967908 2085.419547 2586.688085 2219.248489 2026.458438 2475.166266 2308.837099 1860.46764 1.129723767 1.050994491 1.216343601 1.120911486 1.39034296 1.192844445 1.089219933 1.330400063 1.240998257 1 10.86144958 -7.730266604 0.269003001 0.962865973 1.266546777 0.011132983 0.115638224 1.228078707 0.304702747 0.148114051 0.110017742 1.86E-08 7.730266604 0.303680804 GKGGEIQPVSVK(ac)VGDK ddPTM_HeLa_CUDC101_4h_R1 2 GKGGEIQPVSVKVGDK 16 2 P61604;B8ZZL8 P61604 HSPE1 "10 kDa heat shock protein, mitochondrial" 0 1 ; GKGGEIQPVSVK(1)VGDK;GKGGEIQPVSVK(1)VGDK 209.33 1.07E-24 9203300 7598.4 6894.6 6902.5 6774.8 7661.9 7414.5 7257.8 7794.3 6684.9 5981.5 FALSE TRUE FALSE 6707.72707 7107.014454 7275.670029 7051.105627 7096.696902 7273.080766 7537.735777 8681.571606 6409.345593 5945.921772 1.128122321 1.195275472 1.223640389 1.185872586 1.19354024 1.22320492 1.267715262 1.460088434 1.077939778 1 12.53768477 -1 0.106649883 0.885311714 2.320007015 0.790537382 0.052872078 30.55696444 0.229730882 0.328919882 6.465346457 0.1 1 1.434695301 GKGGK(ac)GLGK(ac)GGAK ddPTM_HeLa_CUDC101_4h_R1 1 GKGGKGLGKGGAK 13 3 P62805 P62805 HIST1H4A Histone H4 0 2 GK(0.062)GGK(0.938)GLGK(1)GGAK 144.28 3.13E-08 0 10228 10682 4648.8 10012 7550.8 8933.6 9433.8 5990 2265.7 3185.8 FALSE TRUE FALSE 9029.089345 11011.09976 4900.12819 10420.33264 6993.792527 8763.206464 9797.664826 6671.877388 2172.306887 3166.85072 2.851125659 3.476987308 1.547318969 3.290440111 2.208437702 2.767167524 3.0938196 2.106786198 0.68595178 1 11.62883315 -9.210322543 0.856528345 0.954016231 2.685017973 0.614295118 0.570073875 0.348687441 0.442149821 0.393104556 0.099634032 6.16E-10 9.210322543 1.731001743 S(ph)NDRNSMDIQCEVDALLER ddPTM_HeLa_CUDC101_4h_R1 2 SNDRNSMDIQCEVDALLER 19 1 Q02241;A0A2U3TZL8;H7BYN4;A0A2R8Y531;H0YME6;Q02241-2 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 S(1)NDRNSMDIQCEVDALLER;S(0.929)NDRNS(0.071)MDIQCEVDALLER ; 134.08 2.48E-05 58080800 3010.72 3121.67 2954.88 3042.03 3479.1 3049.15 2829.23 2510.74 3242.77 2288.28 TRUE FALSE FALSE 2657.807966 3217.844953 3114.629751 3166.097132 3222.453724 2990.992544 2938.354349 2796.552493 3109.101648 2274.669209 1.168437132 1.414643035 1.369267118 1.391893432 1.416669163 1.314913189 1.291772156 1.229432606 1.366836829 1 11.15144104 -7.729764592 1.24000367 1.045678948 1.348868577 0.066114935 0.121052898 0.13482874 0.430843387 0.016931065 0.016195694 1.86E-08 7.729764592 0.303189629 DS(ph)GRLSPDLSVCGQPR ddPTM_HeLa_CUDC101_4h_R1 1 DSGRLSPDLSVCGQPR 16 1 Q8TF76-2;Q8TF76 Q8TF76-2 GSG2 Serine/threonine-protein kinase haspin 1 0 DS(0.987)GRLS(0.013)PDLSVCGQPR 79.804 0.0092106 27109000 1460.5 1575.9 1671.3 1604.2 1623.6 1690.4 1233.5 1321.5 1545.3 1022.4 TRUE FALSE FALSE 1289.302404 1624.451611 1761.655533 1669.62621 1503.830263 1658.158436 1281.076508 1471.934218 1481.60208 1016.318719 1.268600469 1.598368288 1.733369168 1.642817532 1.479683719 1.631533893 1.260506654 1.44829982 1.457812448 1 9.989137189 -7.727097633 1.327041437 1.076437927 1.541145316 0.267902075 0.180425566 0.168884261 0.617522746 0.033323242 0.032148711 1.87E-08 7.727097633 0.464707389 QFTPCQLLADHANS(ph)PNKK ddPTM_HeLa_CUDC101_4h_R1 1 QFTPCQLLADHANSPNKK 18 1 A0A2R8Y4F5;H0YFD6;P40939 A0A2R8Y4F5 HADHA "Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase" 1 0 QFTPCQLLADHANS(1)PNKK 84.859 0.0038376 21096000 1046.7 1071.6 912.56 1006.8 1263 1008.1 1027.1 940.5 893.51 815.39 TRUE FALSE FALSE 924.0074127 1104.614726 961.8957539 1047.861656 1169.831006 988.8721721 1066.715591 1047.562718 856.6791396 810.540024 1.139989865 1.362813301 1.186734431 1.292794464 1.443273585 1.220016462 1.316055419 1.292425651 1.05692392 1 9.662739617 -7.727072976 0.718396363 1.01983555 1.313543978 0.685584453 0.073386213 0.212193493 0.241082505 0.022640043 0.019558744 1.87E-08 7.727072976 0.293708428 ARSDEGQLS(ph)PATR ddPTM_HeLa_CUDC101_4h_R1 1 ARSDEGQLSPATR 13 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 ARSDEGQLS(0.664)PAT(0.336)R 95.751 0.0070174 55916000 2318.6 2444.6 2509.3 2262.9 2570.4 2431.3 2390 2590.3 2562.1 1656 TRUE FALSE FALSE 2046.817223 2519.915228 2644.960348 2355.190843 2380.786713 2384.927003 2482.183101 2885.169282 2456.489154 1646.150038 1.243396516 1.530793166 1.60675533 1.430726719 1.446275648 1.448790783 1.507871727 1.752676982 1.492263218 1 10.68488012 -7.726773016 0.786433501 1.040988458 1.538411026 0.186369771 0.174267858 0.173945679 0.232580384 0.031731232 0.028055616 1.88E-08 7.726773016 0.497422568 LRCERFVEELES(ph)YAK ddPTM_HeLa_CUDC101_4h_R1 1 LRCERFVEELESYAK 15 2 Q8WXX0 Q8WXX0 DNAH7 "Dynein heavy chain 7, axonemal" 1 0 LRCERFVEELES(0.855)Y(0.145)AK 54.402 0.034473 3849600 1263 1370.4 1347.7 1528.2 1880.4 1687.2 1669.4 1272.4 1484.1 592.36 TRUE FALSE FALSE 1114.953055 1412.6204 1420.560739 1590.526601 1741.686638 1655.019471 1733.789317 1417.244873 1422.92477 588.8366164 1.893484582 2.399002305 2.412487096 2.701133994 2.957843636 2.81065991 2.9444319 2.406855881 2.416501845 1 9.201723577 -7.725717433 0.499142916 1.028155855 2.862329472 0.336870352 0.452199142 0.13556435 0.08328069 0.091240023 0.071554759 1.88E-08 7.725717433 1.834173617 SHPLDLS(ph)PNVQSR ddPTM_HeLa_CUDC101_4h_R1 2 SHPLDLSPNVQSR 13 0 H0YBM4;H0YBF7;A0A0A0MRE5;Q9ULH1;Q9ULH1-2 H0YBM4 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 1 0 SHPLDLS(0.98)PNVQS(0.02)R;SHPLDLS(1)PNVQSR ; 151.11 0.00019136 13663800 19211.4 15692 14742.9 14339.5 16275.5 15826.7 14564 11927.3 18682.5 19257.7 TRUE FALSE FALSE 16959.46881 16175.45192 15539.94577 14924.32679 15074.88879 15524.83207 15125.73836 13285.05562 17912.39944 19143.15434 0.885928646 0.844973176 0.811775609 0.779616908 0.787481965 0.810986099 0.790138244 0.693984668 0.935707832 1 14.22454095 -7.72368827 0.233925914 1.063332791 0.704834181 0.848016747 0.032240077 0.433840011 0.089901909 0.062310412 0.047177664 1.89E-08 7.72368827 -0.35849861 NVPQEESLEDS(ph)DVDADFK ddPTM_HeLa_CUDC101_4h_R1 2 NVPQEESLEDSDVDADFK 18 0 O00505 O00505 KPNA3 Importin subunit alpha-4 1 0 NVPQEESLEDS(1)DVDADFK;NVPQEES(0.021)LEDS(0.979)DVDADFK ; 185.96 3.20E-11 169150000 14046 11868.7 11132.9 10642.4 11249.4 11105.2 12389.1 13265.2 12628.6 13090.7 TRUE FALSE FALSE 12399.54917 12234.36058 11734.77825 11076.44307 10419.55417 10893.38681 12866.95174 14775.25675 12108.04376 13012.83593 0.95287063 0.940176349 0.901784846 0.851193631 0.800713559 0.83712627 0.988789208 1.135437104 0.930469255 1 13.66764779 -7.722924499 1.046003353 0.987849782 0.912586352 0.019800308 0.090407252 0.783505158 1.791630514 0.022999788 0.02157833 1.89E-08 7.722924499 -0.07526343 GKLDVQFSGLTK ddPTM_HeLa_CUDC101_4h_R1 2 GKLDVQFSGLTK 12 1 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 ; ; 140.31 1.88E-07 0 5232 3998.1 3445.28 3874.4 3939.2 4232 3716 3203.5 3885.52 2259.61 FALSE FALSE TRUE 4618.712891 4121.276722 3631.542258 4032.414779 3648.613064 4151.281651 3859.327365 3568.173491 3725.357221 2246.169739 2.056261738 1.834801997 1.616771072 1.795240452 1.624371035 1.848160261 1.718181532 1.58855915 1.658537712 1 11.13325124 -9.431146839 1.134443827 0.99552769 1.782964436 0.176400958 0.237784633 0.17661946 0.402890899 0.110394679 0.027061934 3.71E-10 9.431146839 0.787436746 GKLPIVNEDDELVAIIAR ddPTM_HeLa_CUDC101_4h_R1 2 GKLPIVNEDDELVAIIAR 18 1 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 0 0 ; ; 177.04 1.34E-07 15590400 2426.34 2611.88 2452.15 2426.09 3182.6 2214.98 2347.69 2424.37 2749.8 2557.99 FALSE FALSE TRUE 2141.928103 2692.348927 2584.720646 2525.036437 2947.825939 2172.732947 2438.24119 2700.350481 2636.45208 2542.774962 0.8423585 1.058823123 1.016496027 0.99302395 1.159294858 0.854473156 0.958889885 1.061969904 1.036840507 1 11.31218807 -7.246018468 24.90022963 0.925558178 1.01119579 0.03360537 0.089041251 1053.986406 1701878.343 0.01517124 0.018545753 5.68E-08 7.246018468 0.085637612 S(ph)SELLVR ddPTM_HeLa_CUDC101_4h_R1 2 SSELLVR 7 0 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 S(0.989)S(0.011)ELLVR;S(0.999)S(0.001)ELLVR ; 126.24 0.011225 16620300 3504.1 2886.2 2493.51 3032.3 2728.9 2633.21 2508.4 2447.7 3653 3567 TRUE FALSE FALSE 3093.35471 2975.120401 2628.316693 3155.970301 2527.594484 2582.985906 2605.149828 2726.336274 3502.421794 3545.783325 0.872403761 0.839058715 0.741251355 0.890062931 0.712845161 0.728466934 0.734717717 0.76889534 0.987770958 1 11.79188866 -7.721546401 0.318278055 1.029068925 0.714631757 0.801715485 0.04539839 0.409821255 0.128382826 0.050263584 0.037399129 1.90E-08 7.721546401 -0.314437168 GKPASGAGAGAGAGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GKPASGAGAGAGAGKR 16 2 O43818 O43818 RRP9 U3 small nucleolar RNA-interacting protein 2 0 1 ; GKPASGAGAGAGAGK(1)R;GKPASGAGAGAGAGK(1)R 153.41 0.0018528 10875600 4086.6 5558.3 5609.1 8510.5 8577.8 8562.3 8408.8 6263.9 1524.55 1622.83 FALSE TRUE FALSE 3607.574943 5729.544635 5912.344913 8857.594976 7945.032783 8398.988393 8733.130233 6976.957056 1461.707404 1613.177335 2.236316408 3.551714068 3.665030982 5.49077574 4.925083319 5.206487973 5.413620712 4.324978355 0.9061046 1 10.65568933 -7.100128028 0.778215529 1.301278847 5.184453073 0.926362748 0.450476241 0.098348221 0.121206572 0.107088758 0.141134572 7.94E-08 7.100128028 3.883174227 THAPSALS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 THAPSALSPPR 11 0 H9KVB4;O15417-2;O15417 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 THAPS(0.017)ALS(0.983)PPR 89.624 0.016318 12199000 2136.2 1331.3 1543.4 1533.3 2156.6 1803.8 1630.4 1466.5 1927.8 2114.8 TRUE FALSE FALSE 1885.797874 1372.315775 1626.840873 1595.834601 1997.511915 1769.39552 1693.285074 1633.440432 1848.335268 2102.221076 0.897050218 0.652793272 0.773867645 0.759118353 0.950191175 0.841679089 0.805474312 0.777006972 0.87922973 1 11.03769868 -7.721466378 2.13697409 0.964920332 0.800552239 0.339906783 0.078458722 0.182050672 1.738274311 0.015692175 0.01565834 1.90E-08 7.721466378 -0.164368094 IEEVLSPEGSPS(ph)KSPSK ddPTM_HeLa_CUDC101_4h_R1 1 IEEVLSPEGSPSKSPSK 17 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 IEEVLSPEGS(0.003)PS(0.485)KS(0.485)PS(0.026)K 112.57 0.0042215 37803000 4874.5 3648.6 4085 3895.7 4062.6 3509.4 3487.6 3113.9 4407.7 5031.5 TRUE FALSE FALSE 4303.118499 3761.009041 4305.847456 4054.583485 3762.910092 3442.464042 3622.1179 3468.373789 4226.01274 5001.572414 0.860353134 0.751965328 0.860898753 0.810661758 0.752345419 0.688276357 0.724195833 0.693456678 0.84493683 1 12.28816601 -7.721084155 0.093365046 1.329823057 0.398631811 0.565705875 0.060264541 2.663243502 0.191918037 0.982482337 0.851684293 1.90E-08 7.721084155 -0.931191246 GKVGRPTASK(ac)ASK ddPTM_HeLa_CUDC101_4h_R1 1 GKVGRPTASKASK 13 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 1 GKVGRPTASK(1)ASK 59.248 0.036248 1529800 339.02 690.87 528.82 1029.9 1775.2 1218.1 1192 1396 136.54 0 FALSE TRUE FALSE 299.2805895 712.1548858 557.4096088 1071.903774 1644.247033 1194.866772 1237.975839 1554.914997 130.9117634 0 0 SLPTPAVLLS(ph)PTKEPPPLLAK ddPTM_HeLa_CUDC101_4h_R1 1 SLPTPAVLLSPTKEPPPLLAK 21 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 SLPT(0.005)PAVLLS(0.979)PT(0.016)KEPPPLLAK 119.76 5.40E-07 316150000 1870.4 1581.1 1394.6 1505.6 1364.2 1426.6 1128.3 1448.9 1755.8 1982.6 TRUE FALSE FALSE 1651.154547 1629.811817 1469.996294 1567.004876 1263.565684 1399.389982 1171.818909 1613.836919 1683.425181 1970.807407 0.83780614 0.826976706 0.74588531 0.795108071 0.641141128 0.710059226 0.594588241 0.818870943 0.854180462 1 10.94457108 -7.719193003 0.346116379 1.022123925 0.665462825 0.531625931 0.07523327 0.406601417 0.143531632 0.055915041 0.04178481 1.91E-08 7.719193003 -0.3566611 (ac)ADHS(ph)FSDGVPSDSVEAAK ddPTM_HeLa_CUDC101_4h_R1 2 ADHSFSDGVPSDSVEAAK 18 0 Q99733;Q99733-2;E9PNJ7;C9J6D1;C9JZI7;E9PKT8;E9PS34;E9PNW0;E9PJJ2;E9PP22;E9PKI2;C9J1B1 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 ADHS(0.998)FS(0.002)DGVPSDSVEAAK;ADHS(0.942)FS(0.058)DGVPS(0.001)DSVEAAK ; 106.17 1.94E-56 6447100 3076.5 2378.14 2112.02 2426.5 2997.7 2636.3 3164.3 1604.83 2948.7 2905.99 TRUE FALSE FALSE 2715.877334 2451.407675 2226.20219 2525.463158 2776.565643 2586.01697 3286.348111 1787.51736 2827.153338 2888.705042 0.940171216 0.8486182 0.770657494 0.874254422 0.961180045 0.895216691 1.137654438 0.618795389 0.978692285 1 11.49620719 -7.718937877 1.835071834 0.980400313 0.884147405 0.116025107 0.125119468 0.512190812 3.595788705 0.024018593 0.023814944 1.91E-08 7.718937877 -0.096252908 EDILENEDEQNS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 1 EDILENEDEQNSPPK 15 0 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 EDILENEDEQNS(1)PPK 241.8 4.01E-70 0 3449 1940.8 2399.9 2227.8 1991.3 2420 2102.9 1885.6 2519 3794.9 TRUE FALSE FALSE 3044.713448 2000.593748 2529.645853 2318.659313 1844.405766 2373.842532 2184.009557 2100.249082 2415.165754 3772.327766 0.807117949 0.53033402 0.670579549 0.614649484 0.488930411 0.62927791 0.578955407 0.556751484 0.640232213 1 11.88123932 -7.716411168 0.709192906 0.973228166 0.565367212 0.280549421 0.120958131 0.137036602 0.152053196 0.020187077 0.017514965 1.92E-08 7.716411168 -0.407860954 DPSPEADAPVLGSPEKEEAAS(ph)EPPAAAPDAAPPPPDRPIEK ddPTM_HeLa_CUDC101_4h_R1 1 DPSPEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEK 41 2 O15234 O15234 CASC3 Protein CASC3 1 0 DPS(0.01)PEADAPVLGS(0.192)PEKEEAAS(0.798)EPPAAAPDAAPPPPDRPIEK 43.831 0.0070301 23188000 1137.7 891.46 870.96 711.57 817.31 904.21 893.84 929.19 1157.5 1148.8 TRUE FALSE FALSE 1004.340531 918.924826 918.0467321 740.5909003 757.0186696 886.9637008 928.3157082 1034.965234 1109.78736 1141.966887 0.879483059 0.804686052 0.803917121 0.64852222 0.662907724 0.776698266 0.81290948 0.906300564 0.971820964 1 10.1573051 -7.715720394 0.840857345 0.975047398 0.760751112 0.585580115 0.071246071 0.274700476 0.414889072 0.021711687 0.019636275 1.92E-08 7.715720394 -0.214296286 SRLTPVSPES(ph)SSTEEK ddPTM_HeLa_CUDC101_4h_R1 1 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 SRLTPVS(0.114)PES(0.701)S(0.161)S(0.015)T(0.009)EEK 239.75 6.21E-43 30850000 1896 2227.5 1777.2 2118 2661.6 2320.4 2470.4 3129 2323.4 319.49 TRUE FALSE FALSE 1673.753754 2296.126635 1873.280808 2204.381195 2465.259071 2276.142236 2565.684156 3485.192712 2227.628469 317.5896593 5.270177115 7.229853264 5.898431366 6.940972826 7.762403462 7.166928046 8.078613647 10.97388599 7.014171915 1 8.311020129 -7.714757364 0.268967737 2.40E-15 9.818207432 0.317634023 1.974193614 0.39845647 0.099431927 1.552109687 1.16897607 1.93E-08 7.714757364 9.818207432 NCSASTS(ph)QER ddPTM_HeLa_CUDC101_4h_R1 2 NCSASTSQER 10 0 A0A0C4DG62;F8WEP2;H7BZV4;Q66PJ3-4;Q66PJ3-3 A0A0C4DG62 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 0 NCSAS(0.001)T(0.004)S(0.995)QER;NCSAS(0.002)T(0.007)S(0.991)QER ; 120.03 0.0048347 13895100 13709.6 3105.2 12121.7 12480.7 5676 5606.7 5786.1 2340.7 14685.5 18185.7 TRUE FALSE FALSE 12102.58147 3200.867531 12777.03577 12989.71689 5257.292788 5499.761539 6009.271815 2607.155827 14080.15747 18077.53065 0.669482005 0.177063317 0.706790989 0.718555933 0.290819188 0.304231902 0.33241663 0.144220794 0.77887615 1 14.14191 -7.71404911 0.171654959 1.325716152 2.45E-20 0.568058557 0.18432234 1.689239444 0.240682835 0.904421658 0.720062118 1.93E-08 7.71404911 -1.325716152 GLAITFVSDENDAK ddPTM_HeLa_CUDC101_4h_R1 1 GLAITFVSDENDAK 14 0 Q13838-2;Q13838;A0A0G2JJZ9;H0Y400;O00148 Q13838-2;O00148 DDX39B;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A 0 0 273.44 3.18E-85 13646000 1712.3 1638.5 1545.6 1666.6 1735.4 1925.4 1527.8 1650.2 1774 2106.2 FALSE FALSE TRUE 1511.58679 1688.980243 1629.159811 1734.571152 1607.382999 1888.676203 1586.727758 1838.052098 1700.874969 2093.672229 0.721978717 0.806707096 0.778135082 0.828482667 0.76773383 0.902087813 0.757868274 0.877908238 0.81238837 1 11.03181989 -9.44855024 1.162494994 1.000810107 0.797542838 0.027798858 0.076672295 0.226424332 0.543852077 0.037160944 0.00909304 3.56E-10 9.44855024 -0.203267269 GLALALFGGEPK ddPTM_HeLa_CUDC101_4h_R1 1 GLALALFGGEPK 12 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 0 137.95 0.0034789 619280 630.15 532.52 283.5 313.5 601.03 548.9 384.46 415.84 525.46 293.38 FALSE FALSE TRUE 556.2847722 548.92631 298.8268675 326.2858851 556.6932143 538.430647 399.288751 463.1775447 503.8003164 291.6349627 1.907469417 1.882237661 1.02466064 1.118816078 1.908869942 1.846248619 1.369138828 1.588209933 1.727503149 1 8.188019878 -9.525493734 1.297642825 1.001719295 1.609517168 0 0.379054237 0.435082071 1.317711036 0.230640066 0.055928422 2.98E-10 9.525493734 0.607797873 GLCNFLMSDEEYDDR ddPTM_HeLa_CUDC101_4h_R1 1 GLCNFLMSDEEYDDR 15 0 Q9UKN8 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 0 0 126.12 0.0043186 6943500 1589 1142.6 1065.8 1067.5 1398.7 1202.9 1129.9 1267.3 1315.4 971.32 FALSE FALSE TRUE 1402.739829 1177.802152 1123.420372 1111.037264 1295.520688 1179.956687 1173.480621 1411.564309 1261.178655 965.5425454 1.452799605 1.219834545 1.163512035 1.150687009 1.341754119 1.222065969 1.215358792 1.461939006 1.306186518 1 9.915196021 -9.570369884 1.35459433 1.000285897 1.290978906 0 0.13960737 0.3089113 1.017667113 0.081465957 0.019181881 2.69E-10 9.570369884 0.29069301 GLDDDRGPR ddPTM_HeLa_CUDC101_4h_R1 1 GLDDDRGPR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 87.696 0.039711 8602800 5612.1 4344.4 4970.5 4982.3 4687.4 5126.3 4523.9 4019.5 5235.1 5094.1 FALSE FALSE TRUE 4954.258145 4478.245815 5239.220265 5185.499729 4341.619841 5028.524368 4698.388338 4477.063633 5019.306962 5063.800067 0.978367645 0.884364658 1.034642007 1.024033268 0.85738374 0.99303375 0.927838437 0.884131201 0.991213495 1 12.30600473 -1 0.244598134 0.995209627 0.399195742 0.215428769 0.053625709 51.95053756 0.644406054 0.029735475 12.79398838 0.1 1 -0.596013886 GLDDDRGPWR ddPTM_HeLa_CUDC101_4h_R1 4 GLDDDRGPWR 10 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ;;; ;;; 104.01 0.014802 114445000 17004 14904.7 13897.9 13938.8 15018.1 14547.4 13470.9 12777.3 13875.1 13212 FALSE FALSE TRUE 15010.8169 15363.89614 14649.26251 14507.28451 13910.24468 14269.93258 13990.47713 14231.81618 13303.16251 13133.41444 1.142948543 1.169832584 1.115419192 1.104608751 1.059149146 1.08653638 1.065258177 1.083634134 1.0129249 1 13.68095442 -9.415989434 1.17440352 1.000678474 1.106155891 0.58865888 0.032283417 0.296840494 0.73953416 0.024952774 0.006475346 3.84E-10 9.415989434 0.105477417 GLDDLDADADDGWAGLHEEVDYSEK ddPTM_HeLa_CUDC101_4h_R1 2 GLDDLDADADDGWAGLHEEVDYSEK 25 0 Q5JSZ5;Q5JSZ5-5 Q5JSZ5 PRRC2B Protein PRRC2B 0 0 ; ; 154.66 6.34E-11 18941800 3851.8 3596.8 3470.4 3641.3 3705 3114.3 2734.81 3521.3 4168 3667.4 FALSE FALSE TRUE 3400.297843 3707.613145 3658.020321 3789.807953 3431.689531 3054.899916 2840.292538 3922.150558 3996.193276 3645.586142 0.932716362 1.017014274 1.003410749 1.039560665 0.941327237 0.837972221 0.779104492 1.075862812 1.096173049 1 11.83193508 -5.516237313 23.91064834 0.979403292 0.886435195 0.223617503 0.084616952 181.4769731 653355.7606 0.01061428 0.021899195 3.05E-06 5.516237313 -0.092968097 KQPAFPASYIPPSPPT(ph)PPVPVPPPTLPK ddPTM_HeLa_CUDC101_4h_R1 1 KQPAFPASYIPPSPPTPPVPVPPPTLPK 28 1 C9K0J5;Q70E73 C9K0J5 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 KQPAFPASYIPPS(0.429)PPT(0.571)PPVPVPPPTLPK 89.197 5.78E-06 7738800 2150.2 1608.2 1383.8 1667.9 2114.6 1792 1545.7 1874.1 1853.1 2070.9 TRUE FALSE FALSE 1898.156815 1657.746736 1458.612414 1735.924171 1958.610171 1757.820586 1605.318167 2087.439969 1776.714434 2058.582195 0.922069967 0.805285667 0.708551943 0.843262016 0.951436467 0.853898664 0.779817377 1.014018276 0.863076752 1 11.00743534 -7.712793751 1.80278608 0.974559747 0.847848431 0.07982473 0.089072297 0.27728551 1.877396748 0.016935581 0.016817748 1.94E-08 7.712793751 -0.126711316 (ac)S(ph)DKPDMAEIEK ddPTM_HeLa_CUDC101_4h_R1 3 SDKPDMAEIEK 11 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 S(1)DKPDMAEIEK;S(1)DKPDMAEIEK;S(1)DKPDMAEIEK ;; 91.265 0.0062273 306201000 15380.9 12225.4 12916 11859.4 11537.5 11462.5 11576.6 12709.2 12039 15256.4 TRUE FALSE FALSE 13577.97422 12602.05008 13614.27803 12343.07759 10686.40161 11243.87191 12023.11334 14155.96396 11542.74732 15165.65425 0.895310812 0.83095987 0.897704629 0.813883621 0.704644945 0.741403682 0.792785668 0.933422569 0.761111069 1 13.88852012 -7.712043578 0.528207463 0.992467048 0.79139852 0 0.094263878 0.40355943 0.271660104 0.029419533 0.023681227 1.94E-08 7.712043578 -0.201068528 AQPGS(ph)PESSGQPK ddPTM_HeLa_CUDC101_4h_R1 3 AQPGSPESSGQPK 13 0 Q96PN7;Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5 Q96PN7 TRERF1;BCAR2 Transcriptional-regulating factor 1 1 0 AQPGS(0.84)PES(0.16)SGQPK;AQPGS(0.879)PES(0.11)S(0.012)GQPK;AQPGS(0.452)PES(0.338)S(0.21)GQPK ;; 192.54 5.29E-12 154600000 19136.7 16710.2 17177 17929.6 16817 16133.5 16646.8 16175.9 17303.6 16642.3 TRUE FALSE FALSE 16893.52504 17225.02146 18105.64058 18660.84659 15576.44341 15825.78037 17288.87265 18017.29907 16590.33828 16543.31086 1.021169534 1.041207628 1.094438757 1.127999513 0.941555384 0.956627153 1.045067266 1.089098744 1.002842685 1 14.01396037 -7.711656584 1.772586123 1.006932426 1.0399371 0.077564514 0.05473894 0.760726474 4.977014394 0.012002388 0.011913376 1.94E-08 7.711656584 0.033004674 GLDEDETNFLDEVSR ddPTM_HeLa_CUDC101_4h_R1 2 GLDEDETNFLDEVSR 15 0 Q9GZU8;H3BQQ6;H3BTI2;H3BTP8;H3BSY6;H3BP64;H3BUL4;H3BMX9;H3BU93 Q9GZU8 FAM192A Protein FAM192A 0 0 ; ; 337.53 1.34E-190 29231000 2909.5 2735 2257.13 2756.23 2907.2 2818.5 2700.6 2678.7 3045.3 2786.15 FALSE FALSE TRUE 2568.452821 2819.262108 2379.157275 2868.640973 2692.741648 2764.741808 2804.763047 2983.63238 2919.771445 2769.577856 0.927380617 1.017939287 0.859032459 1.035768309 0.972257069 0.998253868 1.012704171 1.07728778 1.054229777 1 11.43545038 -3.505884272 0.706700547 0.964917414 1.321049087 0.190631183 0.054271431 6.048608243 0.991187233 0.007679615 2.212934237 0.000311972 3.505884272 0.356131673 S(ph)VNFSLT(ph)PNEIK ddPTM_HeLa_CUDC101_4h_R1 1 SVNFSLTPNEIK 12 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 S(1)VNFS(0.008)LT(0.992)PNEIK 151.49 0.0019176 7140100 3089.1 2587.3 2195.5 2196.9 2729.7 2759.1 1915.2 1063.1 2550.9 2713.7 TRUE FALSE FALSE 2727.000381 2667.011646 2314.195371 2286.499078 2528.335469 2706.474764 1989.069906 1184.119007 2445.750822 2697.558792 1.01091416 0.988676004 0.857885054 0.847617885 0.937267976 1.003305201 0.737359242 0.438959481 0.90665339 1 11.39743869 -4.410382483 2.084156605 0.978357922 0.371497117 0.843524548 0.066006213 0.137521371 0.820515074 0.010216099 0.138668201 3.89E-05 4.410382483 -0.606860805 down QSGT(ph)PPGMGAPGVPGAAGVGGAGGR ddPTM_HeLa_CUDC101_4h_R1 2 QSGTPPGMGAPGVPGAAGVGGAGGR 25 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 QS(0.001)GT(0.999)PPGMGAPGVPGAAGVGGAGGR;QS(0.071)GT(0.929)PPGMGAPGVPGAAGVGGAGGR ; 139.55 5.29E-10 17197500 4396.6 3610.2 3313.3 3357.7 2742.8 3527.5 3193.6 2661.8 4105.4 4710.2 TRUE FALSE FALSE 3881.237213 3721.425983 3492.42702 3494.641519 2540.469108 3460.218815 3316.778222 2964.808553 3936.173674 4682.183521 0.828937438 0.794805664 0.745897081 0.746370044 0.54258213 0.739018195 0.708382789 0.633210667 0.840670524 1 12.19296577 -7.711344168 0.36422469 1.020006048 0.639931677 0.618354566 0.072273379 0.332333562 0.126479188 0.048238286 0.036435233 1.94E-08 7.711344168 -0.380074371 TAPPALPTGYDS(ph)EEEEESRPMSYDEKR ddPTM_HeLa_CUDC101_4h_R1 2 TAPPALPTGYDSEEEEESRPMSYDEKR 27 2 P25440-2;P25440;A0A0G2JK44;A0A140T9E9;H0Y6K2;P25440-3;P25440-4;A0A0G2JHN8;A0A140T9I1 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 TAPPALPT(0.017)GY(0.037)DS(0.946)EEEEESRPMSYDEKR;TAPPALPT(0.014)GY(0.039)DS(0.947)EEEEESRPMSYDEKR ; 118.46 2.33E-10 49967000 1725.06 1975.79 1735 1766.09 2345.96 1992.11 1768.28 1998.94 1910.08 1128 TRUE FALSE FALSE 1522.851082 2036.661748 1828.799348 1838.118784 2172.903205 1954.113821 1836.483152 2226.49125 1831.345694 1121.290606 1.358123464 1.816354955 1.630977142 1.63928849 1.9378591 1.742736281 1.637829785 1.985650498 1.633248049 1 10.13094452 -7.710485962 0.588388697 1.026774287 1.815439959 0.308036495 0.226133631 0.177308477 0.142580773 0.050270341 0.041675736 1.95E-08 7.710485962 0.788665672 GLDIPEVDWIVQYDPPDDPKEYIHR ddPTM_HeLa_CUDC101_4h_R1 1 GLDIPEVDWIVQYDPPDDPKEYIHR 25 1 Q9NVP1;H7C452 Q9NVP1 DDX18 ATP-dependent RNA helicase DDX18 0 0 72.564 0.00024514 5956800 1941.8 1731.3 1830.7 1831.7 2036.5 1872.6 1790 2003 2021.7 1836 FALSE FALSE TRUE 1714.185148 1784.639301 1929.67318 1906.404643 1886.271452 1836.883275 1859.0409 2231.013424 1938.36467 1825.07939 0.939238675 0.977842011 1.057309172 1.044559844 1.033528438 1.006467601 1.018608237 1.222419932 1.062071426 1 10.83374351 -1.000000025 0.942911431 0.985172022 155.5867053 0.611849459 0.04457117 484.8561534 0.841193029 0.007055075 161656.5871 0.099999994 1.000000025 154.6015332 DISEGGESPVVQS(ph)DEEEVQVDTALATSHTDR ddPTM_HeLa_CUDC101_4h_R1 2 DISEGGESPVVQSDEEEVQVDTALATSHTDR 31 0 D6RJC6;A0A087WYP9;A6NFV8;Q96EV8-3;Q96EV8 D6RJC6 DTNBP1 Dysbindin 1 0 DISEGGES(0.018)PVVQS(0.981)DEEEVQVDTALATSHTDR;DISEGGES(0.006)PVVQS(0.994)DEEEVQVDTALATSHTDR ; 112.85 3.47E-11 27066000 2611.7 1983.9 2008.71 2079.19 2191.3 2139.8 1792.67 1926.81 3138.9 2543.4 TRUE FALSE FALSE 2305.560485 2045.021607 2117.306939 2163.988355 2029.652165 2098.98688 1861.813882 2146.150262 3009.513213 2528.271744 0.911911661 0.808861473 0.837452281 0.855916046 0.802782442 0.830206201 0.736397852 0.848860597 1.190344045 1 11.30393582 -7.710015638 0.493105445 1.000181545 0.796677334 0.657784714 0.071446708 0.225052127 0.135676322 0.016716882 0.01326001 1.95E-08 7.710015638 -0.20350421 DLY(ph)IGVS(ph)T(ph)VQVT(ph)GNPK ddPTM_HeLa_CUDC101_4h_R1 1 DLYIGVSTVQVTGNPK 16 0 H0YJK7;Q9Y6Y1-2;Q9Y6Y1 H0YJK7 CAMTA1 Calmodulin-binding transcription activator 1 4 0 DLY(1)IGVS(1)T(1)VQVT(1)GNPK 53.777 0.002988 0 184.22 135.47 119.88 0 302.9 254.48 124.49 107.76 208.91 176.66 TRUE FALSE FALSE 162.6260109 139.6436701 126.3610754 0 280.5556705 249.626218 129.291621 120.0269628 200.2986414 175.6092185 0.926067619 0.795195556 0.719558327 0 1.59761357 1.421486982 0.736246207 0.683488964 1.140592978 1 7.45622477 -7.708316084 2.182485345 0.974388234 0.860119574 0.031390151 0.412225951 1.382646495 13.78054605 0.083290996 0.083598911 1.96E-08 7.708316084 -0.11426866 EAQSSQATPVQTSQPDSS(ph)NIVKVSPR ddPTM_HeLa_CUDC101_4h_R1 1 EAQSSQATPVQTSQPDSSNIVKVSPR 26 1 H7C5E4;Q8IZH2-2;Q8IZH2 H7C5E4 XRN1 5-3 exoribonuclease 1 1 0 EAQSSQATPVQT(0.005)S(0.004)QPDS(0.208)S(0.552)NIVKVS(0.231)PR 116.04 2.10E-08 37270000 2175.4 1650.3 1723.9 1302.7 2038.7 2138.1 1927.8 1302.6 1848.1 2072.6 TRUE FALSE FALSE 1920.40291 1701.143787 1817.099249 1355.829737 1888.309163 2097.319305 2002.155892 1450.882719 1771.920536 2060.272083 0.93211131 0.825688899 0.881970524 0.658082856 0.916533878 1.017981713 0.971791982 0.704218987 0.860042006 1 11.00861916 -7.707980515 1.46140896 0.979633714 0.860989439 0.04183521 0.111311971 0.44203523 1.957169273 0.022983624 0.022560021 1.96E-08 7.707980515 -0.118644274 GLDSYEEK ddPTM_HeLa_CUDC101_4h_R1 1 GLDSYEEK 8 0 E9PJ16;Q86UT8 E9PJ16 CCDC84 Coiled-coil domain-containing protein 84 0 0 134.66 0.028024 20469000 3350.8 2932.6 2903 3498.7 3407.8 3033.3 3045.3 2807.7 3042.4 3310.4 FALSE FALSE TRUE 2958.024303 3022.94993 3059.944961 3641.392109 3156.413383 2975.444856 3162.758241 3127.317219 2916.990984 3290.709594 0.898901656 0.918631634 0.929873899 1.106567445 0.959189285 0.904195515 0.961117398 0.950347373 0.886432212 1 11.684183 GLEANAPAFDRHMVLLK ddPTM_HeLa_CUDC101_4h_R1 1 GLEANAPAFDRHMVLLK 17 1 A0A1W2PR85;O15056-2;O15056;O15056-3;H0YEV8 A0A1W2PR85 SYNJ2 Synaptojanin-2 0 0 119.53 0.019485 9027200 62.947 133.4 204.32 71.249 173.35 192.34 227.78 0 0 0 FALSE FALSE TRUE 55.56844808 137.5098959 215.3661572 74.15484218 160.5623159 188.671435 236.5655509 0 0 0 0 EGT(ph)APSENGETK ddPTM_HeLa_CUDC101_4h_R1 1 EGTAPSENGETK 12 0 Q15651;A0A087WZE9 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 0 EGT(0.566)APS(0.43)ENGET(0.003)K 131.66 0.0072918 35908000 8318.5 5472.5 7646.6 7340.8 5966.4 6734.2 6904.9 5556.2 6790.2 7898.6 TRUE FALSE FALSE 7343.41804 5641.101238 8059.998326 7640.189554 5526.270559 6605.756355 7171.224306 6188.695349 6510.305082 7851.618776 0.9352744 0.718463466 1.026539693 0.973071894 0.70383837 0.841324132 0.913343415 0.788206296 0.829167242 1 12.93877441 -7.706501642 0.270101743 1.033713213 0.81108915 0 0.111618965 1.84162107 0.463543186 0.162489271 0.123250443 1.97E-08 7.706501642 -0.222624063 GLEGERPAR ddPTM_HeLa_CUDC101_4h_R1 1 GLEGERPAR 9 1 P46783;A0A2R8Y6L3;F6U211;A0A2R8Y7H1;S4R435;A0A2R8YFH6;A0A1W2PQS6 P46783 RPS10;RPS10-NUDT3 40S ribosomal protein S10 0 0 93.143 0.030158 16766000 1318.2 1472.2 1839.6 1409.4 1477.3 1442 1437 1390.1 1483.1 1480.2 FALSE FALSE TRUE 1163.682594 1517.556737 1939.05434 1466.881424 1368.322522 1414.496253 1492.425571 1548.343365 1421.96599 1471.395705 0.790869914 1.031372276 1.317833357 0.996931974 0.9299487 0.961329606 1.014292462 1.052295695 0.96640624 1 10.52296957 -7.121153934 9.051383265 0.90136756 1.044389243 0.203234813 0.111431282 0.386133654 27.14670438 0.021252636 0.026047219 7.57E-08 7.121153934 0.143021683 ESSFEESNIEDPLIVTPDCQEKT(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 ESSFEESNIEDPLIVTPDCQEKTSPK 26 1 A0A087WUU7;Q96GX5-2;Q96GX5-3;Q96GX5 A0A087WUU7 MASTL Serine/threonine-protein kinase greatwall 1 0 ESSFEESNIEDPLIVT(0.042)PDCQEKT(0.54)S(0.419)PK 89.396 1.67E-05 23683000 1435.8 1490.6 1262.3 1222.4 1738.2 1473.4 1411.9 1190.2 1548.8 1156.9 TRUE FALSE FALSE 1267.497701 1536.523619 1330.543756 1272.254756 1609.976449 1445.29735 1466.357456 1325.687557 1484.957808 1150.018707 1.102153984 1.336085761 1.15697575 1.106290487 1.399956747 1.25675986 1.275072698 1.152753037 1.291246654 1 10.16744161 -7.70602463 0.802387348 1.01657738 1.248400456 0 0.123579714 0.297726545 0.412158319 0.025152832 0.022653784 1.97E-08 7.70602463 0.231823076 EES(ph)EES(ph)DEDMGFGLFD ddPTM_HeLa_CUDC101_4h_R1 3 EESEESDEDMGFGLFD 16 0 F8VWS0;P05388-2;Q8NHW5;P05388;F8W1K8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 2 0 EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD ;; 129.77 0.00016007 41744000 4688.6 4058.99 3841.3 3597.3 4306.1 4021.3 3470.83 3935.06 4433.3 4427.4 TRUE FALSE FALSE 4139.009415 4184.042671 4048.972297 3744.013443 3988.447582 3944.600402 3604.701076 4383.011324 4250.557498 4401.065628 0.940456191 0.950688543 0.919998164 0.850706115 0.906245878 0.896283022 0.81905188 0.995897743 0.965801889 1 12.10363717 -7.704425859 0.498247965 0.995974144 0.888675125 0.331794355 0.045629392 0.534595247 0.327702232 0.02086019 0.016669884 1.98E-08 7.704425859 -0.107299019 DTCYS(ph)PKPSVYLSTPSSASK ddPTM_HeLa_CUDC101_4h_R1 2 DTCYSPKPSVYLSTPSSASK 20 1 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 0 DT(0.214)CY(0.054)S(0.725)PKPS(0.007)VYLSTPSSASK;DT(0.054)CY(0.146)S(0.8)PKPS(0.001)VYLSTPSSASK ; 86.08 0.0014462 88353000 4916.4 4314.9 4530.8 4466.3 5440.2 4303.9 4551.1 3793.4 5021 4085.1 TRUE FALSE FALSE 4340.107045 4447.836955 4775.748753 4648.455019 5038.887284 4221.810278 4726.637452 4225.225323 4814.032255 4060.801644 1.068780853 1.095310075 1.176060584 1.144713637 1.240860236 1.03964947 1.163966592 1.040490448 1.185488157 1 11.98754884 -7.704329946 0.93768546 1.016051921 1.135496887 0 0.079014039 0.32267895 0.597061693 0.014477624 0.013474671 1.98E-08 7.704329946 0.119444966 GLESTTLADKDGEIYCK ddPTM_HeLa_CUDC101_4h_R1 2 GLESTTLADKDGEIYCK 17 1 E9PP21;P21291;E9PND2 E9PP21 CSRP1 Cysteine and glycine-rich protein 1 0 0 ; ; 109.07 0.00145 53183000 2604.8 2414 2061.63 2026.65 2764.2 2460.77 2228.4 2625 2481.72 2453.5 FALSE FALSE TRUE 2299.469293 2488.372479 2173.087954 2109.305547 2560.290473 2413.834912 2314.350134 2923.819389 2379.422451 2438.906473 0.942827992 1.020282043 0.891009138 0.864857087 1.049769846 0.989720163 0.948929432 1.198823908 0.975610372 1 11.25201872 -4.258533053 24.75417433 0.968004086 1.198824005 0.63293102 0.053420045 119.342449 1016417.4 0.007402459 0.068987067 5.51E-05 4.258533053 0.230819919 GLEYLYLNVHDEDRDDQTR ddPTM_HeLa_CUDC101_4h_R1 2 GLEYLYLNVHDEDRDDQTR 19 1 Q9Y6G9;C9JGM7;C9JLW1 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 0 0 ; ; 93.226 0.0015289 56186000 12355.3 12134.1 10989.8 10792.8 12654.7 12292.7 10995.4 11509.7 12718.9 7388.2 FALSE FALSE TRUE 10907.03046 12507.93724 11583.94183 11232.97703 11721.18799 12058.23723 11419.49626 12819.91772 12194.62156 7344.254658 1.485110603 1.70309144 1.577279434 1.529491767 1.595966989 1.641859901 1.554888385 1.74557097 1.660430109 1 12.84240037 -8.799456729 0.504267869 0.93391644 1.633661791 0 0.214794069 0.226750905 0.101978416 0.074978669 0.020300972 1.59E-09 8.799456729 0.699745351 GLEYLYLSVHDEDRDDHTR ddPTM_HeLa_CUDC101_4h_R1 2 GLEYLYLSVHDEDRDDHTR 19 1 O43237 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 0 0 ; ; 74.141 0.0039793 13580200 7698.3 4736.5 3982.2 3707.8 10014.9 7341.2 6103.7 6057.4 7126.2 3789.5 FALSE FALSE TRUE 6795.916944 4882.425951 4197.489777 3859.02011 9276.120779 7201.178841 6339.121754 6746.949931 6832.45502 3766.959885 1.804085297 1.296118382 1.114291074 1.024438865 2.462495238 1.911668576 1.682821678 1.791086217 1.813784916 1 11.87918495 -11.21753466 0.226495611 3.94E-35 1.789502443 0 0.454686882 19.36144419 0.618331512 10.33789846 0.377406201 6.06E-12 11.21753466 1.789502443 GLFDDEDEESDLFTEAPQDR ddPTM_HeLa_CUDC101_4h_R1 4 GLFDDEDEESDLFTEAPQDR 20 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 0 0 ;;; ;;; 297.16 3.17E-123 57475000 10044.54 9403.23 7920.46 8093.81 10050.1 8712.6 8192.4 9001.52 10926.2 9663.31 FALSE FALSE TRUE 8867.134248 9692.932371 8348.664026 8423.910556 9308.724146 8546.421671 8508.383612 10026.21665 10475.81741 9605.832202 0.923099015 1.009067426 0.869124491 0.876957913 0.969070035 0.889711739 0.885751847 1.04376346 1.090568437 1 13.22969489 -9.394426816 0.571707357 1.015062795 0.927243462 0.284296873 0.062706044 1.851013509 0.793242404 0.089159181 0.01245541 4.03E-10 9.394426816 -0.087819333 GLFDDEDEESDLFTEASQDR ddPTM_HeLa_CUDC101_4h_R1 4 GLFDDEDEESDLFTEASQDR 20 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5 A0A0A0MR88 FAM21C WASH complex subunit FAM21C 0 0 ;;; ;;; 341.59 1.33E-192 33091800 4874.6 4812.4 4115.81 4494.55 4834.8 3997.88 4362.63 4451.4 4791.31 4566.81 FALSE FALSE TRUE 4303.206777 4960.66434 4338.323138 4677.857176 4478.146436 3921.6271 4530.8981 4958.129383 4593.810174 4539.646411 0.947916729 1.09274245 0.955652213 1.030445271 0.986452695 0.863861796 0.998072909 1.092184046 1.011931273 1 12.14836422 -4.289432832 4.743931065 0.979212726 1.096433479 0.228704132 0.056593721 0.165160119 9.38405896 0.007475757 0.058680212 5.14E-05 4.289432832 0.117220753 GLFDEEMNEILTDPSDDTK ddPTM_HeLa_CUDC101_4h_R1 2 GLFDEEMNEILTDPSDDTK 19 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 222.11 3.05E-33 39699000 20849.3 17338.9 16567.3 16020 18246.7 18254.7 17220.6 16297.7 18494.6 18207.2 FALSE FALSE TRUE 18405.37666 17873.09096 17462.97835 16673.36484 16900.67729 17906.52201 17884.80431 18152.96429 17732.24476 18098.90276 1.016933286 0.987523453 0.964863925 0.921236224 0.933795684 0.989370585 0.988170639 1.002987006 0.979741424 1 14.14361462 -6.9703797 3.491767053 1.007904745 0.965322123 0.227499984 0.025317132 0.19310844 4.984188149 0.004347687 0.005681115 1.07E-07 6.9703797 -0.042582621 GLFIIDDK ddPTM_HeLa_CUDC101_4h_R1 2 GLFIIDDK 8 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5;Q13162;H7C3T4 Q06830;Q13162 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 0 0 ; ; 136.16 0.027252 292470000 10877.7 9936.7 9800.9 9058.2 10220.6 10066.7 9458.9 9726.5 9711.5 9009.2 FALSE FALSE TRUE 9602.632496 10242.83795 10330.7663 9427.632549 9466.6467 9874.69447 9823.732942 10833.72544 9311.18786 8955.612878 1.072247386 1.143733889 1.153552129 1.052706574 1.057062965 1.10262632 1.096935863 1.20971346 1.039704148 1 13.12857645 -13.52287875 0.111491353 0.614240863 1.175004586 0.386308627 0.046216722 65.34682006 0.533902475 5.645597016 0.281578157 3.00E-14 13.52287875 0.560763723 GLFIIDGK ddPTM_HeLa_CUDC101_4h_R1 1 GLFIIDGK 8 0 P32119 P32119 PRDX2 Peroxiredoxin-2 0 0 124.08 0.037054 9456900 3002.8 2519.1 2443.9 2779.3 3084.2 2677.3 2525.8 2520.9 2536 3065.8 FALSE FALSE TRUE 2650.816336 2596.710485 2576.024626 2892.651867 2856.684711 2626.234963 2623.220952 2807.869066 2431.465007 3047.564485 0.869814683 0.852060883 0.845273214 0.949168387 0.937366453 0.861748775 0.860759785 0.921348532 0.797838739 1 11.57344103 -9.239310851 0.938568265 1.001040415 0.886235207 0 0.071393455 0.334667587 0.522232486 0.026191502 0.006981688 5.76E-10 9.239310851 -0.114805208 DTHEDHDT(ph)STENTDES(ph)NHDPQFEPIVSLPEQEIK ddPTM_HeLa_CUDC101_4h_R1 1 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 C9JJ34;P43487-2;P43487 C9JJ34 RANBP1 Ran-specific GTPase-activating protein 2 0 DT(0.029)HEDHDT(0.27)S(0.27)T(0.27)ENT(0.27)DES(0.779)NHDPQFEPIVS(0.113)LPEQEIK 51.758 0.0072487 12654000 1484.3 807.91 1013.2 593.32 1853 1418.3 1178 1029.6 1437.3 1494 TRUE FALSE FALSE 1310.312604 832.8007495 1067.976657 617.5181541 1716.307882 1391.248291 1223.435855 1146.805502 1378.053886 1485.113622 0.882297883 0.56076568 0.719121178 0.415805326 1.155674459 0.936795859 0.823799497 0.772200514 0.927911417 1 10.5363576 -7.704046037 2.531701045 0.957888859 0.775757529 0.139429453 0.189501969 0.365094949 4.906975616 0.037671299 0.038077129 1.98E-08 7.704046037 -0.182131331 KTKPPRPDS(ph)PATTPNISVK ddPTM_HeLa_CUDC101_4h_R1 1 KTKPPRPDSPATTPNISVK 19 3 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 0 KT(0.045)KPPRPDS(0.937)PAT(0.009)T(0.009)PNISVK 53.504 0.034607 24677000 6143.1 5163.8 4948.6 4401.1 5431.8 4868.3 4714.5 5583.5 5744.8 5841.2 TRUE FALSE FALSE 5423.01513 5322.890557 5216.136285 4580.595881 5031.106936 4775.445289 4896.339844 6219.103071 5507.996912 5806.456283 0.933962966 0.916719303 0.89833386 0.788879767 0.86646772 0.822437138 0.843257851 1.07106689 0.948598705 1 12.50344223 -7.700414254 0.797949999 0.98648318 0.874001625 0.185561908 0.072738823 0.495715004 0.678959829 0.020252975 0.018285202 1.99E-08 7.700414254 -0.112481555 GLFQDEDSCSDCSYRDKPGSSLQSFMPEGK ddPTM_HeLa_CUDC101_4h_R1 1 GLFQDEDSCSDCSYRDKPGSSLQSFMPEGK 30 2 Q8NEM2 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 0 0 36.231 0.030599 7999500 2428.7 2350.4 2821.4 2465.8 3058.3 3146 2267.7 3005.3 2999.2 3719.7 FALSE FALSE TRUE 2144.011468 2422.813038 2973.933418 2566.365982 2832.695302 3085.995292 2355.165949 3347.411204 2875.571707 3697.575059 0.579842582 0.655243774 0.804292914 0.694067312 0.766095416 0.834599769 0.636948787 0.905299054 0.777691233 1 11.85236372 -9.519406362 1.288140692 0.999236904 0.716054474 0.110254463 0.115223281 0.27850213 0.830873175 0.068391828 0.016622232 3.02E-10 9.519406362 -0.28318243 IT(ph)ESSLVEITEHK ddPTM_HeLa_CUDC101_4h_R1 1 ITESSLVEITEHK 13 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 IT(0.589)ES(0.394)S(0.017)LVEITEHK 167.61 7.91E-06 13355000 4835 3203.1 3224.1 3070.3 3176.3 3910.3 3306.4 2638 3712.5 5156 TRUE FALSE FALSE 4268.248629 3301.783714 3398.404598 3195.520105 2941.990677 3835.717543 3433.928956 2938.299257 3559.469179 5125.331883 0.832775072 0.644208763 0.663060398 0.623475743 0.57400979 0.748384228 0.669991531 0.573289559 0.694485598 1 12.32342971 -7.697772002 0.814628458 0.968721991 0.634036174 0.314299709 0.102462546 0.137707442 0.195835577 0.016774653 0.015240731 2.01E-08 7.697772002 -0.334685817 QIAQSKEDDDVIVNKPHVS(ph)DEEEEEPPFYHHPFK ddPTM_HeLa_CUDC101_4h_R1 1 QIAQSKEDDDVIVNKPHVSDEEEEEPPFYHHPFK 34 2 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-2;H7C1M2;H7C2G8;J3QSZ5 P18583-10 SON Protein SON 1 0 QIAQSKEDDDVIVNKPHVS(0.989)DEEEEEPPFY(0.011)HHPFK 67.641 2.50E-05 70123000 2824.9 2610.1 2553.9 2771.4 3513.4 2681.3 2675 2837.9 2478.4 2073.6 TRUE FALSE FALSE 2493.769504 2690.514087 2691.971559 2884.429671 3254.223482 2630.15867 2778.175646 3160.955065 2376.239303 2061.266135 1.209824128 1.305272542 1.305979618 1.399348499 1.578749792 1.275991792 1.347800558 1.533501672 1.152805677 1 11.00931507 -7.697358067 0.438434547 0.994855037 1.446374046 0.663109904 0.094240145 0.312379306 0.156955415 0.052063276 0.040801649 2.01E-08 7.697358067 0.45151901 RPAS(ph)PSSPEHLPATPAESPAQR ddPTM_HeLa_CUDC101_4h_R1 1 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 1 0 RPAS(0.993)PS(0.005)S(0.002)PEHLPATPAESPAQR 79.373 0.00067381 13722000 1042.5 803.38 762.19 758.97 768.77 701.46 768.73 649.13 711.14 1105.5 TRUE FALSE FALSE 920.2997303 828.1311856 803.3962969 789.9240771 712.0593687 688.0808192 798.3801736 723.0243353 681.8265082 1098.924437 0.837454969 0.753583375 0.731075104 0.718815644 0.647960264 0.626140248 0.726510529 0.657938172 0.620448946 1 10.10187647 -7.697184083 0.445758454 1.003116256 0.651416088 0 0.118922405 0.145074952 0.074765185 0.018784669 0.014767366 2.01E-08 7.697184083 -0.351700168 GLGK(ac)GGAK ddPTM_HeLa_CUDC101_4h_R1 1 GLGKGGAK 8 1 P62805;Q99525 P62805 HIST1H4A;HIST1H4G Histone H4;Histone H4-like protein type G 0 1 GLGK(1)GGAK 89.296 0.03112 0 1979.1 960.15 922.67 2523.7 855.63 1284.9 1228 320.34 517.72 538.19 FALSE TRUE FALSE 1747.112898 989.7310834 972.5523311 2626.627394 792.5118796 1260.392673 1275.364371 356.8062107 496.3793625 534.9888219 3.265699817 1.850003295 1.817892807 4.909686496 1.481361567 2.355923379 2.383908446 0.666941431 0.927831278 1 9.063364938 -9.555438192 1.325179789 0.999790366 2.480413485 0.196130097 1.081498998 0.55896531 1.758342668 0.739134039 0.174421755 2.78E-10 9.555438192 1.48062312 GLGK(ac)GGAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 5 GLGKGGAKR 9 2 P62805 P62805 HIST1H4A Histone H4 0 2 ;;;; GLGK(1)GGAK(1)R;GLGK(1)GGAK(1)R;GLGK(1)GGAK(1)R;GLGK(1)GGAK(1)R;GLGK(1)GGAK(1)R 148.99 0.0035044 13151776300 24445.44 20281.36 6304.62 24038.11 13444.78 20890.2 16702.28 9386.1 1506.77 1165.73 FALSE TRUE FALSE 21579.98258 20906.20466 6645.466828 25018.48803 12452.98537 20491.75424 17346.49253 10454.57568 1444.660303 1158.796186 18.62275941 18.04131297 5.734802122 21.59006763 10.7464846 17.68365696 14.96940769 9.021927936 1.246690592 1 10.17841113 -9.371147648 1.03797767 0.812925671 14.88512045 0.571822751 4.62509868 0.303960897 0.573598682 3.197999727 0.783835834 4.25E-10 9.371147648 14.07219478 TEEAAADGGGGMQNEPLT(ph)PGYHGFPAR ddPTM_HeLa_CUDC101_4h_R1 1 TEEAAADGGGGMQNEPLTPGYHGFPAR 27 0 O43251-6;O43251-8 O43251-6 1 0 TEEAAADGGGGMQNEPLT(0.995)PGY(0.005)HGFPAR 98.727 2.35E-06 5510400 1151.4 1069.1 891.08 608.74 1068.7 943.59 829.78 812.75 916.74 1201 TRUE FALSE FALSE 1016.434637 1102.037704 939.2544802 633.5670484 989.8641302 925.5925929 861.7848926 905.2701748 878.9515892 1193.856399 0.851387687 0.923090671 0.786739914 0.530689494 0.829131654 0.775296421 0.721849708 0.758273923 0.736228905 1 10.2214136 -7.696456329 0.484549761 0.99108402 0.724750431 0.058483801 0.116076858 0.476538894 0.279583714 0.046158405 0.036922969 2.01E-08 7.696456329 -0.266333589 GLGLDDALEPR ddPTM_HeLa_CUDC101_4h_R1 1 GLGLDDALEPR 11 0 Q9Y230;M0R0Z0;A0A1W2PS48;X6R2L4 Q9Y230 RUVBL2 RuvB-like 2 0 0 127.4 0.014634 6116400 2772.8 2280.2 2189.9 1958.2 2547.8 2166.3 2321.5 1728.8 2152.6 2561.7 FALSE FALSE TRUE 2447.776587 2350.450259 2308.292618 2038.06386 2359.85387 2124.981437 2411.041033 1925.599604 2063.868917 2546.462894 0.961245731 0.923025529 0.906470156 0.800350896 0.926718341 0.834483566 0.946819621 0.756186005 0.810484583 1 11.31427898 -7.059433273 0.928773053 0.98871366 0.858425503 0 0.077499894 0.272641541 0.465600618 0.010387063 0.013800762 8.72E-08 7.059433273 -0.130288156 ELKTDSS(ph)PNQAR ddPTM_HeLa_CUDC101_4h_R1 2 ELKTDSSPNQAR 12 1 A6NLN1;K7ES59;A0A087WU68 A6NLN1 PTBP1 1 0 ELKT(0.006)DS(0.224)S(0.771)PNQAR;ELKT(0.001)DS(0.089)S(0.91)PNQAR ; 203.74 4.11E-16 84524000 7144.4 8503.8 8288.8 7806.9 9785.8 7666.5 8131.3 9794.8 8168 4298 TRUE FALSE FALSE 6306.944262 8765.791999 8736.9176 8125.299126 9063.92103 7520.274286 8444.926965 10909.80044 7831.311583 4272.435305 1.476194211 2.051708539 2.04495024 1.901795708 2.121488187 1.760184473 1.976607336 2.55353204 1.832985411 1 12.06084293 -7.69638477 0.641953842 1.050178121 2.099534665 0.330036143 0.32035552 0.200769534 0.187017754 0.075115882 0.064456123 2.01E-08 7.69638477 1.049356544 GLGLSK(ac)AYVGQK ddPTM_HeLa_CUDC101_4h_R1 2 GLGLSKAYVGQK 12 1 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 1 ; GLGLSK(1)AYVGQK;GLGLSK(1)AYVGQK 180.97 1.99E-07 2113290 1774.41 1489.51 759.89 964.99 1191.1 1343.08 1183.13 1173.36 1116.67 458.46 FALSE TRUE FALSE 1566.41635 1535.400038 800.9719519 1004.346463 1103.234926 1317.462987 1228.76372 1306.93056 1070.64039 455.7330595 3.437135658 3.369077589 1.757546299 2.203804271 2.420791959 2.890865517 2.696235647 2.86775456 2.349270845 1 8.832045219 -5.417980828 3.65290286 2.250887338 2.804845733 0.076641973 0.671129191 0.614125617 14.89354886 0.144306072 0.33841017 3.82E-06 5.417980828 0.553958396 KQS(ph)AGPNSPTGGGGGGGSGGTR ddPTM_HeLa_CUDC101_4h_R1 1 KQSAGPNSPTGGGGGGGSGGTR 22 1 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 KQS(0.559)AGPNS(0.421)PT(0.016)GGGGGGGS(0.002)GGT(0.002)R 72.383 0.0015295 8839000 696.45 742.4 550.69 720.65 812.8 736.82 675.02 528.4 630.01 556.75 TRUE FALSE FALSE 614.8131867 765.272464 580.4619671 750.0412219 752.8413633 722.7663861 701.0557475 588.5509201 604.0407211 553.4384262 1.11089718 1.382759902 1.048828451 1.355238788 1.360298323 1.305956276 1.266727633 1.063444264 1.091432565 1 9.112279006 -7.6954525 1.015403017 1.02514792 1.262216227 0.329738128 0.115804388 0.300024712 0.645719629 0.027188184 0.025773544 2.02E-08 7.6954525 0.237068307 S(ph)QDDAMVDYFFQR ddPTM_HeLa_CUDC101_4h_R1 2 SQDDAMVDYFFQR 13 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4;E9PM68;E9PL65;E9PMX1 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 S(1)QDDAMVDYFFQR;S(1)QDDAMVDYFFQR ; 214.54 2.70E-41 0 1343.93 1239.29 1406.8 1138.77 1371.16 1172.6 1118.35 1126.23 1134.53 1122.22 TRUE FALSE FALSE 1186.396563 1277.471056 1482.855863 1185.213963 1270.012259 1150.234609 1161.485134 1254.435471 1087.764193 1115.544986 1.063512972 1.145154227 1.329265859 1.062452862 1.138467991 1.03109657 1.041181798 1.124504603 0.975096663 1 10.12353298 -7.694526125 1.95602771 1.021508542 1.122279406 0.287446354 0.081156905 0.336171324 2.682724667 0.016843152 0.016916944 2.02E-08 7.694526125 0.100770863 PAAPPRPLDRES(ph)PGVENK ddPTM_HeLa_CUDC101_4h_R1 1 PAAPPRPLDRESPGVENK 18 2 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 PAAPPRPLDRES(1)PGVENK 65.477 0.02338 31613000 2134 1769 1535.3 1532.7 1485.2 1577.3 1484.4 1142.7 1887.5 2357.4 TRUE FALSE FALSE 1883.855755 1823.500793 1618.302962 1595.210131 1375.639755 1547.21563 1541.653805 1272.780349 1809.696451 2343.37808 0.803906024 0.778150487 0.690585517 0.680731012 0.587032783 0.660250108 0.657876686 0.543139137 0.772259699 1 11.19437402 -7.690097992 0.272141969 1.067713127 0.543374766 0.601646179 0.077372608 0.269301284 0.068858145 0.055830166 0.042954831 2.04E-08 7.690097992 -0.524338361 AAGGGAGS(ph)S(ph)EDDAQSR ddPTM_HeLa_CUDC101_4h_R1 1 AAGGGAGSSEDDAQSR 16 0 Q9H4A6;D6REM1 Q9H4A6 GOLPH3 Golgi phosphoprotein 3 2 0 AAGGGAGS(0.789)S(0.679)EDDAQS(0.532)R 128.85 0.004728 3561400 5942.7 4345.6 4293.5 4345.5 4069.2 4718.2 4081 2889.2 5357.5 6382.8 TRUE FALSE FALSE 5246.105715 4479.482785 4525.619597 4522.728273 3769.023223 4628.208196 4238.405537 3218.094849 5136.661582 6344.834822 0.826830936 0.706004634 0.713276188 0.712820491 0.594030157 0.729445025 0.668008807 0.507199153 0.809581609 1 12.63136689 -7.686939708 0.255578068 1.082891987 0.546366706 0.602293308 0.080174075 0.468225149 0.110411584 0.099946215 0.077431001 2.06E-08 7.686939708 -0.53652528 GLGTDEDSLIEIICSR ddPTM_HeLa_CUDC101_4h_R1 4 GLGTDEDSLIEIICSR 16 0 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5;H0YKS4;H0YNA0;H0YMM1;H0YN52;H0YLE2 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;;; ;;; 292.73 9.74E-104 281502400 6130.4 6270.7 5610.34 4816.3 6247.6 5632.9 5466.8 5585.4 5521.1 4383.28 FALSE FALSE TRUE 5411.803805 6463.892834 5913.651951 5012.729532 5786.726995 5525.461818 5677.656307 6221.219359 5293.517921 4357.208056 1.242034747 1.48349419 1.357211287 1.150445301 1.328081405 1.268119802 1.303049162 1.427799472 1.214887573 1 12.08918829 -8.559137214 0.749162928 1.011950685 1.321361275 0.327025582 0.107901435 0.293993423 0.337215508 0.045689727 0.020815395 2.76E-09 8.559137214 0.30941059 GLGTDEDTIIDIITHR ddPTM_HeLa_CUDC101_4h_R1 2 GLGTDEDTIIDIITHR 16 0 P08133-2;P08133;E5RK69 P08133-2 ANXA6 Annexin A6;Annexin 0 0 ; ; 225.29 9.60E-33 30637000 11847.4 11011 10834.2 10919 11128.7 10502.4 9599.2 9972.3 11678.9 11119.4 FALSE FALSE TRUE 10458.66573 11350.23586 11419.92962 11364.32402 10307.75797 10302.08422 9969.44436 11107.50632 11197.4908 11053.26131 0.946206322 1.026867595 1.033172862 1.028142165 0.93255354 0.93204023 0.901945957 1.004907602 1.013048591 1 13.43218449 -5.728612348 24.96002431 0.986589639 0.939166264 0.347705363 0.037190641 216.967843 164970.2823 0.005948124 0.011895654 1.87E-06 5.728612348 -0.047423375 LTVAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 LTVASPK 7 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 LT(0.001)VAS(0.999)PK;LT(0.002)VAS(0.998)PK;LT(0.002)VAS(0.998)PK ;; 96.665 0.025769 523390000 25096.4 21477.1 20685 20515.5 20635.3 21007.6 20530.3 22198.5 23232.8 23289.3 TRUE FALSE FALSE 22154.63804 22138.78399 21803.29367 21352.21077 19113.07503 20606.91503 21322.16055 24725.48751 22275.13415 23150.77421 0.956971799 0.956286982 0.941795444 0.922310873 0.825591181 0.890117749 0.921012851 1.068019898 0.96217664 1 14.49877282 -7.685795341 0.717271522 0.991783278 0.921798747 0.09956205 0.057792187 0.73375708 0.82863942 0.018306489 0.016282841 2.06E-08 7.685795341 -0.069984531 GLGTDEDTLIEILASR ddPTM_HeLa_CUDC101_4h_R1 2 GLGTDEDTLIEILASR 16 0 P04083;Q5T3N1 P04083 ANXA1 Annexin A1;Annexin 0 0 ; ; 378.52 4.46E-275 220056000 1416.3 1168.07 951.35 1088.09 1501.86 1307.78 1116.58 1121.83 1187.03 1113.69 FALSE FALSE TRUE 1250.283461 1204.056852 1002.782859 1132.467013 1391.07078 1282.836275 1159.646865 1249.534593 1138.100121 1107.065722 1.12936697 1.087610995 0.905802464 1.0229447 1.25653857 1.158771561 1.047495954 1.128690526 1.028033023 1 10.11252516 -5.829218643 24.9999999 1.049397693 1.141492701 0.364120376 0.07389515 61.04681748 22516.06407 0.012498188 0.022654897 1.48E-06 5.829218643 0.092095009 GLGVEIAK ddPTM_HeLa_CUDC101_4h_R1 1 GLGVEIAK 8 0 P22314;P22314-2;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 126.28 0.025673 1642600 1415.7 1353.5 1236.1 1154.2 1577.8 1426.6 1381.7 1403.9 1449.1 1197.4 FALSE FALSE TRUE 1249.753792 1395.199731 1302.927305 1201.273265 1461.408837 1399.389982 1434.992632 1563.714301 1389.367485 1190.277812 1.04996815 1.172163101 1.094641345 1.00923772 1.22778802 1.175683499 1.205594709 1.313738932 1.167263198 1 10.21708262 -1 0.194368638 0.986185802 2.42480796 0.395750543 0.074592454 19.17969035 0.216941899 0.054758526 8.3926188 0.1 1 1.438622159 TKDQPDGSSLS(ph)PAQS(ph)PSQSQPPAASSLR ddPTM_HeLa_CUDC101_4h_R1 1 TKDQPDGSSLSPAQSPSQSQPPAASSLR 28 1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 2 0 TKDQPDGS(0.006)S(0.044)LS(0.932)PAQS(0.645)PS(0.265)QS(0.108)QPPAASSLR 79.993 9.83E-06 37105000 2490.6 1769.1 1828.1 1630.8 1739 2209.8 1719.7 1587.4 1888.2 2543.7 TRUE FALSE FALSE 2198.655644 1823.603874 1926.932616 1697.311073 1610.717435 2167.651747 1786.029405 1768.1032 1810.367597 2528.569959 0.869525336 0.721199691 0.762064189 0.671253357 0.637007265 0.857263901 0.706339723 0.699250259 0.715965002 1 11.30410598 -7.68528783 0.828107444 0.974666938 0.714280263 0.09158214 0.10083118 0.17976561 0.263132154 0.016989984 0.015615082 2.06E-08 7.68528783 -0.260386675 GLKPSCTIIPLMK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 GLKPSCTIIPLMKK 14 2 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 1 ; GLKPSCTIIPLMK(1)K;GLKPSCTIIPLMK(1)K 78.814 0.01587 1991880 2656.58 1892.58 1813.46 1823.88 2313.83 1858.33 1615.17 2106.64 2207.32 900.89 FALSE TRUE FALSE 2345.17972 1950.888147 1911.501133 1898.26571 2143.143371 1822.885451 1677.467648 2346.451382 2116.333335 895.5314662 2.618757473 2.17846968 2.134487961 2.119708555 2.393152504 2.035534786 1.873153218 2.620177482 2.363214935 1 9.806600315 -9.39378819 1.051931688 0.980497223 2.252933611 0 0.472564566 0.187952763 0.362896377 0.181521775 0.043614792 4.04E-10 9.39378819 1.272436389 VSALEEDMDDVES(ph)S(ph)EEEEEEDEKLER ddPTM_HeLa_CUDC101_4h_R1 7 VSALEEDMDDVESSEEEEEEDEKLER 26 1 Q8NAV1 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 2 0 VSALEEDMDDVES(1)S(1)EEEEEEDEKLER;VSALEEDMDDVES(1)S(1)EEEEEEDEKLER;VSALEEDMDDVES(1)S(1)EEEEEEDEKLER;VSALEEDMDDVES(1)S(1)EEEEEEDEKLER;VSALEEDMDDVES(1)S(1)EEEEEEDEKLER;VSALEEDMDDVES(1)S(1)EEEEEEDEKLER;VSALEEDMDDVES(1)S(1)EEEEEEDEKLER ;;;;;; 104.45 9.56E-07 223404000 8652.49 7386.07 6781.76 7251.44 7805.69 7243.2 7295.48 6853.06 8158.68 7954.52 TRUE FALSE FALSE 7638.258239 7613.626062 7148.402459 7547.185067 7229.8798 7105.048028 7576.869107 7633.184649 7822.375757 7907.206161 0.965986985 0.962871829 0.904036434 0.954469241 0.914340622 0.898553532 0.958223291 0.965345344 0.98927176 1 12.94895232 -7.681799833 0.765022871 0.99351229 0.932339392 0.510076113 0.023003025 0.317197995 0.401768498 0.006950029 0.006293112 2.08E-08 7.681799833 -0.061172898 GKGGVTGSPEAS(ph)ISGSK ddPTM_HeLa_CUDC101_4h_R1 1 GKGGVTGSPEASISGSK 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GKGGVT(0.001)GS(0.368)PEAS(0.624)IS(0.008)GSK 133.94 0.00013434 1300200000 11099 10640 10222 10345 10995 9985.3 9968.6 9458.4 10724 9225.2 TRUE FALSE FALSE 9797.992045 10967.80579 10774.63224 10766.91381 10183.92076 9794.847039 10353.09224 10535.10602 10281.95218 9170.3281 1.068445091 1.196010183 1.174945119 1.174103445 1.110529595 1.068102137 1.128977298 1.148825419 1.121219663 1 13.16275764 -7.681493038 1.85424921 1.022721994 1.140119163 0.267564552 0.048766861 0.152988149 1.093920963 0.008659231 0.008721322 2.08E-08 7.681493038 0.117397169 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPS(ph)PVAPAPVPSR ddPTM_HeLa_CUDC101_4h_R1 1 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSR 42 1 Q9UK76-3;Q9UK76 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GEGDIHENVDTDLPGS(0.004)LGQS(0.001)EEKPVPAAPVPS(0.979)PVAPAPVPS(0.016)R 85.689 4.71E-12 499740000 7682.4 4934.2 5567.4 4996.4 5426.6 6167 5075 4635.9 5810.9 7957.8 TRUE FALSE FALSE 6781.880718 5086.216854 5868.390484 5200.174788 5026.290529 6049.37475 5270.74445 5163.632117 5571.372242 7910.466652 0.857330043 0.642973048 0.741851365 0.657379017 0.635397474 0.764730453 0.666300066 0.652759482 0.704303866 1 12.94954709 -7.67992783 0.863689091 0.971674186 0.673867234 0.21634247 0.098133553 0.128259578 0.202812256 0.013940706 0.012964595 2.09E-08 7.67992783 -0.297806952 GLLDDLRNDLDR ddPTM_HeLa_CUDC101_4h_R1 1 GLLDDLRNDLDR 12 1 Q07065 Q07065 CKAP4 Cytoskeleton-associated protein 4 0 0 97.734 0.016804 2497900 1038.2 908.74 747.24 925.48 1079.9 838.28 750.79 819.3 1072.9 770.7 FALSE FALSE TRUE 916.5037698 936.7372023 787.6380547 963.2250747 1000.237928 822.2912057 779.7482218 912.5658003 1028.674608 766.1158421 1.196299201 1.22270961 1.028092635 1.257283849 1.305596195 1.073324895 1.017794149 1.191159026 1.342714184 1 9.581418744 -9.320168333 0.991758372 0.997885953 1.161400352 0 0.139465526 0.572139021 0.987507197 0.067273376 0.01695088 4.78E-10 9.320168333 0.163514399 GLLEFEHQR ddPTM_HeLa_CUDC101_4h_R1 2 GLLEFEHQR 9 0 Q14697;Q14697-2;F5H6X6;E9PKU7;E9PNH1 Q14697 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 182.98 7.61E-11 24033000 21942 14388.7 9637.7 14147.9 14873 15359.1 13645.4 13110.1 9726.9 8376.6 FALSE FALSE TRUE 19369.99202 14831.99879 10158.74321 14724.91251 13775.84842 15066.15076 14171.70765 14602.50079 9325.953065 8326.775611 2.326229615 1.781241562 1.220009244 1.768381088 1.654403705 1.809361926 1.701944223 1.753680113 1.119995722 1 13.02354223 -9.608265708 1.427199073 1.002214034 1.816909387 0.520972629 0.259186923 0.285411532 1.048029716 0.219376222 0.051124439 2.46E-10 9.608265708 0.814695353 GLLK(ac)ALK ddPTM_HeLa_CUDC101_4h_R1 1 GLLKALK 7 1 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 1 GLLK(1)ALK 96.964 0.019049 0 189.86 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 167.6048986 0 0 0 0 0 0 0 0 0 0 GLLLYGPPGTGK ddPTM_HeLa_CUDC101_4h_R1 1 GLLLYGPPGTGK 12 0 K7EM02;K7EIJ8;Q8IYT4-2;Q8IYT4 K7EM02 KATNAL2 Katanin p60 ATPase-containing subunit A-like 2 0 0 170.99 2.22E-05 657420 628.26 553.89 566.69 487.83 622.74 494.08 600.96 461.34 666.09 489.5 FALSE FALSE TRUE 554.6163152 570.9546944 597.3269755 507.725816 576.8017109 484.6562472 624.1392285 513.8570808 638.6334883 486.5884322 1.139805796 1.173383206 1.227581537 1.043439964 1.185399555 0.996029118 1.282684066 1.056040478 1.31247158 1 8.926558213 -9.0431069 0.82206142 0.99942911 1.140240738 0 0.12718349 0.590182505 0.723642926 0.050282593 0.015091138 9.06E-10 9.0431069 0.140811628 GLLNCK(ac)MPPAEK ddPTM_HeLa_CUDC101_4h_R1 1 GLLNCKMPPAEK 12 1 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 0 1 GLLNCK(1)MPPAEK 156.71 2.31E-05 326830 249.46 518.01 446.62 333.03 344.76 299.03 321.03 292.01 311.8 318.78 FALSE TRUE FALSE 220.218677 533.9692741 470.7656282 346.6124029 319.3277417 293.326501 333.4122346 325.2512381 298.947472 316.8838824 0.694950703 1.685062901 1.485609254 1.093815186 1.00771216 0.925659263 1.052159018 1.026405116 0.94339753 1 8.307810472 SAS(ph)ASHQADIK ddPTM_HeLa_CUDC101_4h_R1 2 SASASHQADIK 11 0 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 0 S(0.022)AS(0.687)AS(0.29)HQADIK;S(0.174)AS(0.413)AS(0.413)HQADIK ; 153.32 0.00039836 18362200 5169.3 2166.1 3790 4230.8 2987.1 2700 2820.9 1688.61 3619.3 6074 TRUE FALSE FALSE 4563.36249 2232.834974 3994.898864 4403.350311 2766.747584 2648.501999 2929.703058 1880.834537 3470.110922 6037.871578 0.755789922 0.369804979 0.661640251 0.729288501 0.458232268 0.438648283 0.485221161 0.311506217 0.574724202 1 12.55982436 -7.679152391 0.125929412 1.447143232 0.00939143 0.197992889 0.178284062 2.373858715 0.243041645 1.388932478 1.180937 2.09E-08 7.679152391 -1.437751802 ATSDTLES(ph)PPKIIPK ddPTM_HeLa_CUDC101_4h_R1 2 ATSDTLESPPKIIPK 15 1 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 ATSDTLES(1)PPKIIPK;AT(0.002)S(0.01)DT(0.009)LES(0.98)PPKIIPK ; 141.46 0.0020413 81425000 5695 5266.4 5277.5 5055.1 6188.8 4814 3711.19 2318.73 6439.6 6284.6 TRUE FALSE FALSE 5027.440733 5428.651542 5562.817614 5261.268828 5732.264554 4722.180971 3854.331841 2582.684851 6174.156962 6247.21892 0.804748609 0.868970915 0.890447043 0.842177759 0.917570623 0.755885304 0.616967628 0.413413534 0.988304883 1 12.60899837 -4.400640151 1.035121652 0.900522105 0.228988092 0.883854075 0.05783066 0.453657424 0.441552745 0.011598546 0.316539121 3.98E-05 4.400640151 -0.671534013 down KGVSASAVPFTPS(ph)SPLLSCSQEGSR ddPTM_HeLa_CUDC101_4h_R1 2 KGVSASAVPFTPSSPLLSCSQEGSR 25 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 KGVSASAVPFT(0.016)PS(0.633)S(0.349)PLLS(0.002)CSQEGSR;KGVSASAVPFTPS(0.82)S(0.18)PLLSCSQEGSR ; 147.8 5.08E-11 81017000 7126.5 6450.2 6003.7 6140.6 7852.1 6168 6417.5 6201.2 7329.3 6015.8 TRUE FALSE FALSE 6291.142473 6648.923017 6328.278182 6391.04021 7272.866227 6050.355677 6665.025125 6907.119542 7027.183152 5980.017754 1.052027391 1.111856735 1.058237357 1.068732648 1.216194755 1.011762159 1.114549387 1.155033284 1.175110751 1 12.54593405 -7.675099163 0.344567741 0.98924788 1.126232358 0 0.075192788 0.904344121 0.320182358 0.047232098 0.036803502 2.11E-08 7.675099163 0.136984478 QAEEECAHRGS(ph)PLPK ddPTM_HeLa_CUDC101_4h_R1 1 QAEEECAHRGSPLPK 15 1 F2Z2A4;H7C1J2;H7C1M5;Q9H147 F2Z2A4 DNTTIP1 Deoxynucleotidyltransferase terminal-interacting protein 1 1 0 QAEEECAHRGS(1)PLPK 77.137 0.014541 53646000 3148.6 2942.8 3223.9 2946.1 3811.5 3781 3338.9 3096.6 2805.8 2077.3 TRUE FALSE FALSE 2779.525881 3033.46418 3398.193786 3066.254692 3530.333239 3708.883725 3467.682491 3449.104427 2690.143736 2064.944127 1.346053796 1.469029665 1.645658951 1.484909278 1.709650732 1.796118198 1.679310566 1.670313681 1.302768293 1 11.01188703 -7.673236428 0.376925257 0.962728713 1.7639879 0.764454994 0.111385453 0.186201002 0.074945839 0.055977871 0.04398178 2.12E-08 7.673236428 0.801259188 S(ph)SPGQPEAGPEGAQER ddPTM_HeLa_CUDC101_4h_R1 1 SSPGQPEAGPEGAQER 16 0 P40222 P40222 TXLNA Alpha-taxilin 1 0 S(0.929)S(0.071)PGQPEAGPEGAQER 97.957 0.0051075 3966500 1300.9 811.78 968.91 747.72 1052.1 811.78 935.32 735.99 1025.8 1368.7 TRUE FALSE FALSE 1148.410474 836.7899796 1021.292205 778.2152535 974.4886791 796.296649 971.3956057 819.7721266 983.5160898 1360.558912 0.844072582 0.615033993 0.750641664 0.571982034 0.716241444 0.585271716 0.713968059 0.602526006 0.722876519 1 10.40998371 -7.671989394 0.756766362 0.974477692 0.63928956 0.34497656 0.102076347 0.150955817 0.187331609 0.018020146 0.016386058 2.13E-08 7.671989394 -0.335188132 LTPVS(ph)PESS(ph)STEEK ddPTM_HeLa_CUDC101_4h_R1 1 LTPVSPESSSTEEK 14 0 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 LTPVS(0.999)PES(0.215)S(0.423)S(0.3)T(0.062)EEK 117.48 0.016965 36445000 5515.3 4075 3799.2 3601.9 4492.6 4150.9 4629.3 5587 4632.8 5344 TRUE FALSE FALSE 4868.804895 4200.54592 4004.596244 3748.801051 4161.189849 4071.728498 4807.853652 6223.001497 4441.834023 5312.21365 0.916530323 0.790733618 0.753846985 0.705694706 0.783325017 0.766484326 0.90505653 1.17145166 0.836155003 1 12.37509746 -7.670981202 1.761626489 0.972526349 0.829759489 0.021912249 0.131505545 0.391864185 2.521151065 0.026219782 0.026456372 2.13E-08 7.670981202 -0.14276686 S(ph)RTPPSAASSR ddPTM_HeLa_CUDC101_4h_R1 1 SRTPPSAASSR 11 1 Q5SYE7-2;Q5SYE7 Q5SYE7-2 NHSL1 NHS-like protein 1 1 0 S(0.978)RT(0.022)PPSAASSR 93.649 0.011213 1712600 539.66 434.37 495.24 522.71 655.26 525.32 347.41 0 504.21 562.84 TRUE FALSE FALSE 476.4018729 447.7524248 522.0141724 544.0283731 606.9227753 515.3003962 360.8097201 0 483.4262504 559.4922026 0.851489745 0.800283583 0.933014205 0.972360956 1.084774323 0.921014437 0.644887844 0 0.864044661 1 9.127974215 -4.397036217 2.669960666 0.932492182 5.25E-16 0.924902613 0.080056843 0.075895673 0.83258044 0.012791833 0.134404709 4.01E-05 4.397036217 -0.932492182 down AAAYDIS(ph)EDEED ddPTM_HeLa_CUDC101_4h_R1 3 AAAYDISEDEED 12 0 P49585 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 AAAYDIS(1)EDEED;AAAYDIS(1)EDEED;AAAYDIS(1)EDEED ;; 88.596 0.023331 64402000 5844.5 4934.1 4607.5 4585.11 5284.7 4839.1 4679.58 4711 5721.8 5468.7 TRUE FALSE FALSE 5159.41657 5086.113773 4856.595387 4772.110604 4894.85821 4746.80223 4860.072968 5247.281197 5485.944982 5436.171929 0.949090028 0.935605761 0.893385171 0.877843944 0.900423731 0.873188393 0.894024882 0.965252988 1.009155901 1 12.40837537 -7.670652495 0.72972436 0.990852522 0.897624927 0.689819471 0.026277405 0.24274465 0.282254322 0.008024142 0.007243291 2.13E-08 7.670652495 -0.093227595 HSVTAAT(ph)PPPS(ph)PTSGESGDLLSNLLQSPSSAK ddPTM_HeLa_CUDC101_4h_R1 1 HSVTAATPPPSPTSGESGDLLSNLLQSPSSAK 32 0 Q96QU8-2;Q96QU8 Q96QU8-2 XPO6 Exportin-6 2 0 HS(0.001)VT(0.009)AAT(0.527)PPPS(0.28)PT(0.28)S(0.361)GES(0.188)GDLLS(0.354)NLLQSPSSAK 70.701 1.58E-05 48047000 6026.2 3509.8 3075.3 2846.3 3938.2 4205.8 4489.1 4129.5 4093.6 6701.5 TRUE FALSE FALSE 5319.817971 3617.932778 3241.56002 2962.384417 3647.686832 4125.581372 4662.246091 4599.585588 3924.860075 6661.63918 0.798574919 0.54309948 0.48660096 0.444693016 0.547565957 0.619304237 0.699864698 0.690458529 0.58917332 1 12.7016615 -7.667415083 1.335265224 0.941041994 0.572728202 0.185751182 0.140796662 0.146290767 0.537378673 0.022381205 0.022215555 2.15E-08 7.667415083 -0.368313792 TNTPQGVLPS(ph)SQLK ddPTM_HeLa_CUDC101_4h_R1 1 TNTPQGVLPSSQLK 14 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 T(0.064)NT(0.158)PQGVLPS(0.603)S(0.176)QLK 102.95 0.0061243 18206000 3955.1 3217.9 2981.1 3206 2838.3 3548.2 3026.9 2840.1 3599.9 3843.8 TRUE FALSE FALSE 3491.489174 3317.039685 3142.267283 3336.754538 2628.924264 3480.523997 3143.648547 3163.405504 3451.510598 3820.936907 0.913778285 0.868122077 0.822381358 0.873281768 0.68803132 0.910908524 0.822742857 0.827913567 0.903315256 1 11.89971072 -7.666075513 0.63704083 0.988656146 0.817754973 0.39576707 0.060469387 0.304000652 0.27895825 0.018264685 0.016014677 2.16E-08 7.666075513 -0.170901173 WLNSGRGDEASEEGQNGS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 WLNSGRGDEASEEGQNGSSPK 21 1 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;P35611-5 E7EV99 ADD1 Alpha-adducin 1 0 WLNSGRGDEASEEGQNGS(0.5)S(0.5)PK 177.24 4.83E-10 107660000 1418.5 1797.7 1469.2 1494.8 1661.9 1409.8 1465 1890.1 1498.7 953.52 TRUE FALSE FALSE 1252.22558 1853.085006 1548.629396 1555.764405 1539.304948 1382.910414 1521.505541 2105.261344 1436.922952 947.8484206 1.321124299 1.955043619 1.633836553 1.641364137 1.623999064 1.458999544 1.605220315 2.221094954 1.515983907 1 9.888512552 -7.665439043 1.545278727 1.099279501 1.706605056 0.337218736 0.254848965 0.17231627 0.849022814 0.046148046 0.046335777 2.16E-08 7.665439043 0.607325556 DLHILPPPLIPT(ph)PPPDDPR ddPTM_HeLa_CUDC101_4h_R1 2 DLHILPPPLIPTPPPDDPR 19 0 E9PK26;E9PMW6;Q9NRS6-2;Q9NRS6 E9PK26 SNX15 Sorting nexin-15 1 0 DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR ; 100.62 0.0019368 32536000 7772.9 6835.4 6395.8 5393 6683.3 6007.5 5844.4 6871.8 7436.7 7630.4 TRUE FALSE FALSE 6861.772445 7045.990572 6741.576294 5612.949851 6190.286274 5892.916947 6069.820466 7654.057935 7130.156078 7585.014041 0.904648615 0.928935732 0.888802085 0.740005202 0.816120608 0.77691576 0.800238527 1.009102672 0.940032021 1 12.88893614 -7.664704563 0.588585745 0.986480175 0.827968182 0.31545082 0.073266438 0.500187523 0.401739589 0.027904294 0.024023022 2.16E-08 7.664704563 -0.158511993 AS(ph)PNPVAMETR ddPTM_HeLa_CUDC101_4h_R1 1 ASPNPVAMETR 11 0 H7BXF5;A0A2R8YDB8;Q9H0E3;Q9H0E3-3 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 0 AS(0.997)PNPVAMET(0.003)R 93.228 0.0204 11138000 1045.8 823.48 673.2 716.5 836.25 726.77 683.64 813.53 794.69 1085.8 TRUE FALSE FALSE 923.2129093 848.8504427 709.5952283 745.721967 774.5615035 712.9080731 710.0082238 906.1389668 761.9325418 1079.341613 0.855348203 0.786452067 0.657433402 0.69090449 0.717624053 0.660502722 0.657816038 0.839529353 0.705923437 1 10.07593584 -7.663284171 0.745030925 0.974177362 0.695682442 0.096463279 0.101486141 0.17529022 0.211350952 0.017287414 0.015758943 2.17E-08 7.663284171 -0.27849492 PAETPVATSPTAT(ph)DSTSGDSSR ddPTM_HeLa_CUDC101_4h_R1 1 PAETPVATSPTATDSTSGDSSR 22 0 P54727;P54727-2;H0Y579 P54727 RAD23B UV excision repair protein RAD23 homolog B 1 0 PAETPVAT(0.097)S(0.283)PT(0.04)AT(0.535)DS(0.035)T(0.007)S(0.002)GDSSR 142.58 5.61E-10 0 1255.6 1063.1 895.8 1039 945.23 740.17 831.58 789.22 982.25 1406.4 TRUE FALSE FALSE 1108.420471 1095.852851 944.2296576 1081.374911 875.5022661 726.0524905 863.6543192 879.0616147 941.7612393 1398.03467 0.792841905 0.783852414 0.675397884 0.77349649 0.626237879 0.519337972 0.617763162 0.628783844 0.673632249 1 10.44918442 -7.662148657 0.2193188 1.108663661 0.495220798 0.215795597 0.112515093 0.561063969 0.110156969 0.138683242 0.111213485 2.18E-08 7.662148657 -0.613442863 SLGLWTTS(ph)PESSSR ddPTM_HeLa_CUDC101_4h_R1 1 SLGLWTTSPESSSR 14 0 H0YEJ7;E9PJK4;A6NI28 H0YEJ7 ARHGAP42 Rho GTPase-activating protein 42 1 0 SLGLWT(0.23)T(0.18)S(0.582)PES(0.003)S(0.003)S(0.003)R 77.42 0.031283 4890800 1423.2 1168.9 1028.1 871.63 1403.7 1372.6 1024.3 899.36 1207.5 1388 TRUE FALSE FALSE 1256.374653 1204.912424 1083.682196 907.1788389 1300.151848 1346.419942 1063.807594 1001.739507 1157.726339 1379.744114 0.91058526 0.873286873 0.78542259 0.657497886 0.942313748 0.975847571 0.771018034 0.726032818 0.839087717 1 10.43018502 -7.661328059 0.929558497 0.978988925 0.81663818 0.115886759 0.100388809 0.40892032 0.74042832 0.024432504 0.023280227 2.18E-08 7.661328059 -0.162350746 QS(ph)PGHQSPLAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 QSPGHQSPLASPK 13 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 2 0 QS(1)PGHQS(0.039)PLAS(0.961)PK 107.13 0.0015527 0 3097.8 2659.5 2597.7 2540.8 2375.1 2271 2322 2698.5 2727.9 3073.6 TRUE FALSE FALSE 2734.68058 2741.436043 2738.13952 2644.424806 2199.893605 2227.684459 2411.560318 3005.686332 2615.454807 3055.318091 0.895055932 0.897266982 0.896188036 0.865515383 0.720021137 0.729117032 0.789299263 0.983755617 0.856033555 1 11.57710687 -7.656880292 0.44578503 0.995641152 0.805221391 0.12557903 0.083903409 0.639607924 0.330469658 0.044095715 0.035995507 2.20E-08 7.656880292 -0.190419761 VS(ph)NSPEPQK ddPTM_HeLa_CUDC101_4h_R1 1 VSNSPEPQK 9 0 O60271;O60271-3;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 VS(0.713)NS(0.287)PEPQK 112.94 0.0087669 10433000 4217.2 1513.9 3415.5 4630.4 2713.2 2551.5 2622.2 1112.4 4438.1 5017.2 TRUE FALSE FALSE 3722.866209 1560.541465 3600.152261 4819.247726 2513.052641 2502.834389 2723.339132 1239.03112 4255.15964 4987.357471 0.746460672 0.312899461 0.721855668 0.966292822 0.503884603 0.501835772 0.546048513 0.248434392 0.853189222 1 12.2840599 -7.656390079 0.104950585 1.491904433 6.17E-15 0.431925299 0.185588516 5.983891643 0.510138112 3.654207282 3.21252621 2.21E-08 7.656390079 -1.491904433 NWSLS(ph)QVNVSHAR ddPTM_HeLa_CUDC101_4h_R1 1 NWSLSQVNVSHAR 13 0 P55291 P55291 CDH15 Cadherin-15 1 0 NWS(0.222)LS(0.778)QVNVSHAR 92.151 0.015539 51162000 629.18 429.78 307.46 404.43 435.01 558.18 441.76 426.65 537.74 667.07 TRUE FALSE FALSE 555.4284742 443.0210124 324.0822176 420.9244035 402.920179 547.5336465 458.7988312 475.2181114 515.5741296 663.102238 0.837621173 0.66810363 0.488736426 0.63478055 0.607629044 0.825715275 0.691897576 0.716658886 0.777518307 1 9.373087514 -7.655428911 1.389893515 0.950962391 0.660376101 0.432373963 0.10201639 0.168962589 0.671271756 0.020620948 0.020647138 2.21E-08 7.655428911 -0.29058629 ALS(ph)SDSILSPAPDAR ddPTM_HeLa_CUDC101_4h_R1 5 ALSSDSILSPAPDAR 15 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 ALS(0.995)S(0.005)DSILSPAPDAR;ALS(0.981)S(0.015)DS(0.004)ILSPAPDAR;ALS(0.494)S(0.494)DS(0.012)ILSPAPDAR;ALS(0.772)S(0.198)DS(0.03)ILSPAPDAR;ALS(0.499)S(0.499)DS(0.001)ILSPAPDAR ;;;; 269.05 1.35E-85 2515881000 7465.59 6796.55 6438.83 6005.78 7565.35 7279.06 6842.57 5887.6 7062.2 6394.54 TRUE FALSE FALSE 6590.484857 7005.94365 6786.932626 6250.721668 7007.269203 7140.224058 7106.490217 6557.820586 6771.093127 6356.504992 1.036809515 1.102169141 1.067714512 0.983358257 1.102377676 1.123294022 1.117987043 1.031670799 1.065222655 1 12.63401803 -7.651342595 0.329532145 0.990578642 1.094996781 0.046473526 0.045540485 1.085766093 0.362957095 0.04326583 0.034418494 2.23E-08 7.651342595 0.104418139 DELHIVEAEAMNY(ph)EGSPIK ddPTM_HeLa_CUDC101_4h_R1 2 DELHIVEAEAMNYEGSPIK 19 0 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 1 0 DELHIVEAEAMNY(0.69)EGS(0.31)PIK;DELHIVEAEAMNY(0.55)EGS(0.45)PIK ; 109.67 0.0001489 11703500 4551.3 3233.2 3314.4 3073 3217 3644.8 2938.4 2696.1 4177 4753.6 TRUE FALSE FALSE 4017.803513 3332.81106 3493.58649 3198.330223 2979.688319 3575.281513 3051.735072 3003.013126 4004.822292 4725.325376 0.850270234 0.705308269 0.739332472 0.676848676 0.630578443 0.756621233 0.645825383 0.63551457 0.847523075 1 12.20619796 -7.645832251 0.549024842 0.990585041 0.655791037 0.730621842 0.058668825 0.147285278 0.105457947 0.017281715 0.014868006 2.26E-08 7.645832251 -0.334794003 HIKEEPLS(ph)EEEPCTSTAIASPEKK ddPTM_HeLa_CUDC101_4h_R1 4 HIKEEPLSEEEPCTSTAIASPEKK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 HIKEEPLS(0.996)EEEPCT(0.003)S(0.001)TAIASPEKK;HIKEEPLS(0.995)EEEPCT(0.003)S(0.001)T(0.001)AIASPEKK;HIKEEPLS(0.977)EEEPCT(0.021)S(0.001)TAIASPEKK;HIKEEPLS(0.993)EEEPCT(0.006)STAIASPEKK ;;; 93.729 1.56E-05 227501000 14316.3 12771.2 13357.2 13550.8 15227.9 14792.9 13862.8 13808.3 12671 10772.9 TRUE FALSE FALSE 12638.16502 13164.66553 14079.33064 14103.4602 14104.56816 14510.75008 14397.49284 15380.18106 12148.69602 10708.82231 1.180163854 1.229328973 1.314741269 1.31699451 1.317097973 1.355027626 1.344451558 1.436215917 1.134456774 1 13.38651221 -7.645088968 0.259929204 0.926296278 1.448414241 0.849986051 0.047009745 0.205622774 0.05026562 0.042457471 0.034083113 2.26E-08 7.645088968 0.522117964 S(ph)Y(ph)RS(ph)T(ph)ARTGLPR ddPTM_HeLa_CUDC101_4h_R1 1 SYRSTARTGLPR 12 2 Q9BUN1-2;Q9BUN1 Q9BUN1-2 MENT Protein MENT 4 0 S(0.999)Y(0.998)RS(0.755)T(0.755)ART(0.494)GLPR 45.115 0.03878 2346100 161.67 0 166.24 127.88 63.555 150.58 114.44 117.3 124.07 179.69 TRUE FALSE FALSE 142.7192877 0 175.2274372 133.0954991 58.86667427 147.7079374 118.8539891 130.6529579 118.9557821 178.6211959 0.799005331 0 0.981000247 0.745127131 0.329561528 0.826933985 0.665396895 0.73145271 0.665966777 1 7.480759476 -7.644826288 3.64916162 0.921704589 0.618299938 0.080165985 0.274797796 0.231315194 6.477919282 0.046826468 0.048768072 2.27E-08 7.644826288 -0.303404652 NYGSPLIS(ph)GSTPK ddPTM_HeLa_CUDC101_4h_R1 1 NYGSPLISGSTPK 13 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 NYGS(0.004)PLIS(0.832)GS(0.082)T(0.082)PK 185.66 5.29E-11 30679000 2995 2316.2 2235 2637.1 2348.9 2032.4 2367.3 2052.4 2566.1 2979.2 TRUE FALSE FALSE 2643.93064 2387.559377 2355.830861 2744.652337 2175.626327 1993.635356 2458.607554 2286.03692 2460.324272 2961.479586 0.892773549 0.806204908 0.79549117 0.926784149 0.734641676 0.673188958 0.830195678 0.771923916 0.830775361 1 11.53210243 -7.643671759 0.368922795 1.01448208 0.748980755 0.234272766 0.078695236 0.500358188 0.196084336 0.049528801 0.039952183 2.27E-08 7.643671759 -0.265501325 DRSWVIGS(ph)PEILR ddPTM_HeLa_CUDC101_4h_R1 2 DRSWVIGSPEILR 13 1 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 DRS(0.002)WVIGS(0.998)PEILR;DRSWVIGS(1)PEILR ; 88.637 0.011147 10792800 2778.37 3228.9 2480.21 2944.9 4063.6 3019.8 2825.76 2755.5 3004.3 1964.29 TRUE FALSE FALSE 2452.69368 3328.378582 2614.297655 3065.005751 3763.836324 2962.202346 2934.75051 3069.174982 2880.461482 1952.606316 1.256112746 1.704582514 1.33887596 1.569699804 1.927596102 1.517050479 1.502991405 1.571835017 1.475188039 1 10.93118539 -7.642323975 0.775172138 1.044047102 1.613271489 0.263042838 0.204814117 0.222904476 0.287964688 0.044725557 0.041702219 2.28E-08 7.642323975 0.569224387 STPLASPSPSPGRS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 2 STPLASPSPSPGRSPQR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 STPLAS(0.001)PS(0.002)PS(0.008)PGRS(0.988)PQR;STPLAS(0.001)PS(0.01)PS(0.052)PGRS(0.937)PQR ; 200.71 5.50E-16 43793000 7718.3 5492.5 6047 5928.6 6256.1 5910.6 5657.7 5472.7 6091.5 7466.6 TRUE FALSE FALSE 6813.572574 5661.717415 6373.919111 6170.393934 5794.599967 5797.865153 5875.919384 6095.690047 5840.405792 7422.188331 0.918000497 0.762809722 0.858765478 0.831344296 0.780713141 0.781153063 0.7916694 0.821279355 0.786884613 1 12.85762889 -7.642280921 0.761934278 0.986950066 0.796198591 0 0.071388513 0.149587072 0.18735401 0.010035338 0.009324453 2.28E-08 7.642280921 -0.190751475 EYFDDS(ph)TEER ddPTM_HeLa_CUDC101_4h_R1 1 EYFDDSTEER 10 0 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 0 EYFDDS(0.979)T(0.021)EER 157.68 1.88E-06 0 896.31 660.47 659.97 576.12 615.37 637.15 636.74 551.3 732.86 951.43 TRUE FALSE FALSE 791.2459005 680.8182979 695.6499745 599.6166638 569.9753811 624.9974253 661.2992751 614.0577636 702.6512006 945.770852 0.836614809 0.719855445 0.735537549 0.633997826 0.602656954 0.660833884 0.69921723 0.649266957 0.742940215 1 9.885346869 -7.636852644 0.579298233 0.983919612 0.641679372 0.458810441 0.08132687 0.125724542 0.098225005 0.014958696 0.01312655 2.31E-08 7.636852644 -0.34224024 EEAPAS(ph)PLRPLYPQISPLK ddPTM_HeLa_CUDC101_4h_R1 2 EEAPASPLRPLYPQISPLK 19 1 P85037-2;P85037;U3KQ26 P85037-2;U3KQ26 FOXK1 Forkhead box protein K1 1 0 EEAPAS(0.885)PLRPLY(0.106)PQIS(0.009)PLK;EEAPAS(1)PLRPLYPQISPLK ; 89.659 0.0020493 347760000 4013.6 3249.1 3477.5 3357.7 2709.36 3526.1 3099.69 3197.4 3631.9 3871.5 TRUE FALSE FALSE 3543.131892 3349.20092 3665.504169 3494.641519 2509.495911 3458.845517 3219.246082 3561.379092 3482.191545 3848.472146 0.920659357 0.870267678 0.952456983 0.908059455 0.652075893 0.898758101 0.836499774 0.925400771 0.904824412 1 11.91007009 -7.635631501 0.481232745 0.995633863 0.840611827 0.160013765 0.081244217 0.702276487 0.408146069 0.038576654 0.032565697 2.31E-08 7.635631501 -0.155022037 SVYATMGDHENRS(ph)PVKEPVEQPR ddPTM_HeLa_CUDC101_4h_R1 2 SVYATMGDHENRSPVKEPVEQPR 23 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 S(0.001)VY(0.013)AT(0.035)MGDHENRS(0.951)PVKEPVEQPR;SVYATMGDHENRS(0.999)PVKEPVEQPR ; 69.07 0.00091008 105934000 3466.4 2161.08 3122.4 2621.65 3325 3510.11 2568.14 2341.28 3476.84 3275.7 TRUE FALSE FALSE 3060.073847 2227.660313 3291.206389 2728.572219 3079.721374 3443.1605 2667.19402 2607.801851 3333.523184 3256.215991 0.93976378 0.684125476 1.010745724 0.837957994 0.945797632 1.057411581 0.819108446 0.800868818 1.02374142 1 11.66898068 -7.633188125 3.922343468 0.976212556 0.885706138 0.185107734 0.103488365 0.295117031 9.472866883 0.018387189 0.019249233 2.33E-08 7.633188125 -0.090506418 LS(ph)SDLTR ddPTM_HeLa_CUDC101_4h_R1 1 LSSDLTR 7 0 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 LS(0.777)S(0.222)DLT(0.001)R 90.601 0.032744 16080000 5104.9 3497 3830.6 4065.2 4388.8 4260.3 3870 3821.9 3896.5 4936 TRUE FALSE FALSE 4506.511361 3604.738425 4037.693823 4230.996427 4065.046968 4179.041876 4019.267196 4256.969647 3735.884621 4906.640452 0.918451516 0.734665289 0.822903953 0.862300074 0.828478672 0.851711454 0.819148506 0.867593558 0.761393596 1 12.26051984 -7.632338803 2.318801526 0.970672488 0.82884697 0 0.07695281 0.109603212 1.229975696 0.008164967 0.008451659 2.33E-08 7.632338803 -0.141825518 FGESEEVEMEVES(ph)DEEDDKQEK ddPTM_HeLa_CUDC101_4h_R1 8 FGESEEVEMEVESDEEDDKQEK 22 1 Q15459;Q15459-2;H7C1L2 Q15459 SF3A1 Splicing factor 3A subunit 1 1 0 FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGES(0.001)EEVEMEVES(0.999)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK;FGESEEVEMEVES(1)DEEDDKQEK ;;;;;;; 122.44 3.04E-07 2646258200 31801.69 27504.45 26089.87 25306.87 26710.01 26142.91 25522.41 25253.1 30556.18 30405.76 TRUE FALSE FALSE 28073.94411 28351.8295 27500.36729 26338.99354 24739.66578 25644.27755 26506.8179 28127.81083 29296.64133 30224.90519 0.928834811 0.938028733 0.909857851 0.871433455 0.818519219 0.848448569 0.876985974 0.930617008 0.969288113 1 14.88345019 -7.631954604 0.482352842 0.995058949 0.864574914 0.64906988 0.031295406 0.363686074 0.212130185 0.016781387 0.014220177 2.33E-08 7.631954604 -0.130484035 ANSTSDSVFTETPS(ph)PVLK ddPTM_HeLa_CUDC101_4h_R1 2 ANSTSDSVFTETPSPVLK 18 0 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 1 0 ANSTSDSVFTET(0.015)PS(0.985)PVLK;ANSTSDSVFTET(0.007)PS(0.993)PVLK ; 175.56 1.50E-07 26159800 4672.7 4582.1 4339.7 4558.4 4907.4 4541.3 4013.22 3022.09 4085.81 3891.26 TRUE FALSE FALSE 4124.973189 4723.26907 4574.317309 4744.311255 4545.390879 4454.682269 4168.01124 3366.11251 3917.391182 3868.114612 1.066404076 1.221077849 1.182570262 1.226517756 1.175092089 1.151641747 1.07753044 0.870220468 1.01273917 1 11.91741483 -7.631864681 2.581736389 1.02450827 1.135690398 0.188832174 0.097756893 0.312061298 4.368032491 0.019233939 0.019967139 2.33E-08 7.631864681 0.111182128 MDRT(ph)PPPPT(ph)LSPAAITVGR ddPTM_HeLa_CUDC101_4h_R1 3 MDRTPPPPTLSPAAITVGR 19 1 E7EX82;Q8NDX5-2;Q8NDX5;Q8NDX5-7;H7C4H9 E7EX82 PHC3 Polyhomeotic-like protein 3 2 0 MDRT(1)PPPPT(0.983)LS(0.017)PAAITVGR;MDRT(1)PPPPT(0.971)LS(0.028)PAAIT(0.001)VGR;MDRT(1)PPPPT(0.996)LS(0.004)PAAITVGR ;; 119.25 7.95E-05 171691000 8462 8309.8 7873.6 7995.1 9180.6 9192.6 8415.6 7574.7 8046.1 6594 TRUE FALSE FALSE 7470.097188 8565.815088 8299.270632 8321.174736 8503.365428 9017.266471 8740.192511 8436.97323 7714.436352 6554.778595 1.13964142 1.306804641 1.266140498 1.269482198 1.297277293 1.375678269 1.33340774 1.287148469 1.176917914 1 12.67833134 -7.631401433 0.571481572 1.010253182 1.332443946 0.648534163 0.062186145 0.136089434 0.103950125 0.015216482 0.013371834 2.34E-08 7.631401433 0.322190763 IQYAWANSEIS(ph)QDLNK ddPTM_HeLa_CUDC101_4h_R1 2 IQYAWANSEISQDLNK 16 0 C9JSC4 C9JSC4 FIGNL1 1 0 IQYAWANSEIS(1)QDLNK;IQYAWANSEIS(1)QDLNK ; 77.744 0.019767 204187000 2556.1 1825.05 2139.6 2079.05 1983.06 2055.7 1941.13 1949.69 2354.9 2396.4 TRUE FALSE FALSE 2256.477833 1881.277627 2255.273248 2163.842645 1836.773615 2016.490948 2016.000034 2171.634829 2257.830025 2382.146106 0.947245774 0.789740655 0.946740102 0.908358492 0.771058337 0.846501792 0.846295712 0.911629569 0.947813411 1 11.21804619 -7.631072761 0.901758543 0.989868174 0.856330791 0.387212701 0.055750683 0.287425916 0.489654514 0.013843405 0.013359741 2.34E-08 7.631072761 -0.133537383 DLESCSDDDNQGS(ph)KSPK ddPTM_HeLa_CUDC101_4h_R1 1 DLESCSDDDNQGSKSPK 17 1 F8W895;A0A0A0MRK1;E9PAV9;Q5T3I0;Q5T3I0-3 F8W895 GPATCH4 G patch domain-containing protein 4 1 0 DLESCSDDDNQGS(0.97)KS(0.03)PK 87.824 0.0045565 23069000 1789.5 2183 1863.7 1801.3 2070 2255.4 1839.7 1386.8 2154.6 1262.7 TRUE FALSE FALSE 1579.737523 2250.255643 1964.457259 1874.7648 1917.300224 2212.382003 1910.657845 1544.667706 2065.786476 1255.189404 1.258565056 1.792761821 1.565068389 1.493611079 1.527498732 1.762588176 1.522206799 1.230625196 1.645796618 1 10.29368936 -7.63068964 2.012380788 1.089486688 1.558430366 0.005939894 0.235569339 0.13967335 1.171165295 0.032081783 0.033085195 2.34E-08 7.63068964 0.468943679 LHKTEDGGWEWS(ph)DDEFDEESEEGKAAISQLR ddPTM_HeLa_CUDC101_4h_R1 1 LHKTEDGGWEWSDDEFDEESEEGKAAISQLR 31 2 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 LHKT(0.003)EDGGWEWS(0.995)DDEFDEES(0.003)EEGKAAISQLR 59.561 0.00061043 13504000 362.18 451.1 359.99 429.46 721.71 440.7 259.56 335.74 426.56 230.47 TRUE FALSE FALSE 319.7258094 464.9978563 379.4521483 446.9752351 668.4708911 432.2943818 269.5713161 373.9592845 408.9770163 229.0991542 1.395578306 2.029679498 1.656279132 1.951012157 2.917823479 1.886931374 1.176657841 1.632303209 1.785152886 1 7.839828322 -7.629533225 1.116491282 1.104165261 1.911328191 0.114496558 0.47438817 0.338331585 0.867150078 0.104594123 0.103946398 2.35E-08 7.629533225 0.80716293 HSGASART(ph)T(ph)PAT(ph)GEQS(ph)PGAR ddPTM_HeLa_CUDC101_4h_R1 1 HSGASARTTPATGEQSPGAR 20 1 O00308-4;O00308-2;O00308 O00308-4 WWP2 NEDD4-like E3 ubiquitin-protein ligase WWP2 4 0 HS(0.258)GAS(0.266)ART(0.698)T(0.86)PAT(0.918)GEQS(1)PGAR 54.511 0.025557 3956500 979.35 1231.2 628.74 928.5 766.89 878.87 979.29 800.71 842.61 815.81 TRUE FALSE FALSE 864.5520776 1269.131813 662.7315862 966.3682433 710.3180526 862.107019 1017.061543 891.8595898 807.8772592 810.9575258 1.066087989 1.564979388 0.817221081 1.191638542 0.875900439 1.063072962 1.254148967 1.099761161 0.996201692 1 9.663482545 -7.62828909 5.094963833 1.026878807 1.120906961 0.056020273 0.194640929 0.459101874 22.67071292 0.033294239 0.035132876 2.35E-08 7.62828909 0.094028154 S(ph)RSPLELEPEAKK ddPTM_HeLa_CUDC101_4h_R1 1 SRSPLELEPEAKK 13 2 A0A087WTQ7;A0A087WV56;A0A087WW71;A0A087X0X5;Q92466-3;Q92466-2;Q92466-5;Q92466-4;Q92466 A0A087WTQ7 DDB2 DNA damage-binding protein 2 1 0 S(0.5)RS(0.5)PLELEPEAKK 59.155 0.033438 116330000 3749.1 4398.6 4455.5 3553 4712.2 4513.7 4740.9 4332 4598 2451 TRUE FALSE FALSE 3309.636181 4534.115652 4696.377807 3697.906697 4364.590394 4427.608693 4923.758101 4825.137369 4408.468494 2436.421343 1.358400586 1.86097354 1.927572101 1.517761576 1.791393926 1.817259033 2.020897623 1.980419923 1.809403167 1 11.25054793 -7.62772027 0.526316272 1.005609481 1.920776045 0.111761025 0.287811037 0.221874727 0.148371864 0.070853834 0.061343112 2.36E-08 7.62772027 0.915166564 LGEAS(ph)DSELADADK ddPTM_HeLa_CUDC101_4h_R1 4 LGEASDSELADADK 14 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 LGEAS(0.988)DS(0.012)ELADADK;LGEAS(0.963)DS(0.037)ELADADK;LGEAS(0.983)DS(0.017)ELADADK;LGEAS(0.966)DS(0.034)ELADADK ;;; 288.96 9.96E-104 236036000 15527.9 12084.1 11796.7 11308.2 10465.8 10923.6 10851.6 10856.2 12871.5 16329 TRUE FALSE FALSE 13707.7431 12456.3968 12434.46529 11769.39727 9693.758785 10715.25053 11270.14985 12092.02593 12340.93132 16231.87438 0.844495391 0.767403474 0.766052336 0.725079371 0.597205138 0.660136364 0.694322146 0.744955613 0.760289972 1 13.98654198 -7.624275927 0.493963129 0.992662417 0.66693432 0.380942974 0.081351191 0.191372719 0.115814045 0.021890141 0.018764516 2.38E-08 7.624275927 -0.325728097 DMSPLS(ph)ETEMALGK ddPTM_HeLa_CUDC101_4h_R1 2 DMSPLSETEMALGK 14 0 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMSPLS(0.999)ET(0.001)EMALGK;DMS(0.001)PLS(0.999)ETEMALGK ; 261.17 6.55E-80 6517100 4935.1 3960.7 3430.8 3946.4 3569.9 3797.3 4151.1 3169.2 3822.1 4893.7 TRUE FALSE FALSE 4356.615059 4082.724472 3616.279426 4107.35125 3306.555589 3724.872829 4311.209318 3529.968918 3664.55142 4864.592055 0.895576651 0.839273762 0.743388014 0.844336216 0.679718988 0.765711243 0.886242725 0.725645414 0.753311147 1 12.24810311 -7.623961667 0.704545472 0.982765981 0.771700659 0.002211937 0.092019235 0.241126471 0.262398116 0.017612738 0.016306038 2.38E-08 7.623961667 -0.211065323 EPEAASSRGS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 3 EPEAASSRGSPVR 13 1 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EPEAAS(0.013)S(0.061)RGS(0.926)PVR;EPEAAS(0.003)S(0.032)RGS(0.964)PVR;EPEAAS(0.003)S(0.014)RGS(0.983)PVR ;; 99.238 0.0057087 204886000 10251 8975.7 9727.9 9899.9 11202.2 10075.2 9594.1 9047.7 9182.6 8058.9 TRUE FALSE FALSE 9049.39332 9252.230678 10253.8197 10303.66071 10375.83602 9883.032346 9964.147651 10077.6536 8804.089341 8010.965304 1.129625829 1.154945793 1.279973051 1.28619465 1.295204214 1.233688073 1.243813607 1.257982429 1.099004802 1 12.96776038 -7.618676084 0.637845697 1.018723706 1.271765142 0.816858648 0.039790087 0.14493726 0.132830502 0.012610239 0.011472414 2.41E-08 7.618676084 0.253041436 SAAPS(ph)SPGSPR ddPTM_HeLa_CUDC101_4h_R1 1 SAAPSSPGSPR 11 0 Q9H211;H3BSY1 Q9H211 CDT1 DNA replication factor Cdt1 1 0 SAAPS(0.499)S(0.499)PGS(0.001)PR 129 0.0022955 1982500 2654.9 1506.5 1689.5 1495.8 1385.3 1618.3 1483.2 597.99 2325.1 3217.4 TRUE FALSE FALSE 2343.696647 1552.913479 1780.83948 1556.805189 1283.109179 1587.433624 1540.407521 666.0627644 2229.258394 3198.262762 0.732803031 0.485549061 0.556814625 0.486765881 0.401189419 0.496342465 0.481638826 0.208257674 0.697021652 1 11.64307276 -7.617516347 0.341298848 1.057277928 0.32637554 0.643379733 0.121213805 0.268348979 0.094673742 0.073585607 0.060533274 2.41E-08 7.617516347 -0.730902388 HSVTAATPPPS(ph)PT(ph)SGESGDLLSNLLQSPSSAK ddPTM_HeLa_CUDC101_4h_R1 1 HSVTAATPPPSPTSGESGDLLSNLLQSPSSAK 32 0 Q96QU8-2;Q96QU8 Q96QU8-2 XPO6 Exportin-6 2 0 HS(0.002)VT(0.007)AAT(0.103)PPPS(0.413)PT(0.413)S(0.413)GES(0.413)GDLLS(0.233)NLLQS(0.001)PSSAK 59.636 0.0013725 7750200 1954.3 1265.2 1229.8 862.54 1395.9 1273.4 1249.2 1260.6 1598.6 2145.4 TRUE FALSE FALSE 1725.219917 1304.179312 1296.286708 897.7181094 1292.927238 1249.112017 1297.382062 1404.101608 1532.705031 2132.639065 0.808960102 0.611533069 0.607832206 0.420942354 0.606256942 0.585711871 0.608345821 0.658386893 0.718689372 1 11.0584241 -7.61728187 0.952835654 0.954540537 0.571224088 0.537138965 0.099631764 0.129836203 0.244897225 0.018087899 0.017741098 2.41E-08 7.61728187 -0.383316449 LISDS(ph)VER ddPTM_HeLa_CUDC101_4h_R1 2 LISDSVER 8 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 LIS(0.05)DS(0.95)VER;LIS(0.089)DS(0.911)VER ; 116.3 0.0086998 32095000 4110.8 3252.6 2914 3024.5 3146.7 3007.4 3022 2378.8 3607.1 4281.5 TRUE FALSE FALSE 3628.938256 3352.808751 3071.539654 3147.852183 2914.57421 2950.038856 3138.559552 2649.592977 3458.413811 4256.033448 0.852657363 0.78777782 0.721690676 0.73962111 0.684809987 0.69314278 0.737437708 0.622549848 0.812590844 1 12.05529377 -7.614777312 0.393906717 1.012497923 0.660617638 0.609216204 0.062780129 0.158924366 0.068589268 0.020356807 0.016989217 2.43E-08 7.614777312 -0.351880285 S(ph)AVDLSCSR ddPTM_HeLa_CUDC101_4h_R1 2 SAVDLSCSR 9 0 Q9Y446;Q9Y446-2;E9PK71;E9PQ15 Q9Y446 PKP3 Plakophilin-3 1 0 S(1)AVDLSCSR;S(1)AVDLSCSR ; 102.53 0.01537 43579000 2559.7 2104.42 2314.26 2421.11 3559.8 3314.6 3011.9 2618.2 2214.21 1257.44 TRUE FALSE FALSE 2259.655846 2169.254686 2439.375896 2519.853331 3297.200646 3251.379527 3128.069992 2916.245305 2122.939327 1249.960691 1.807781527 1.735458324 1.951562088 2.015946061 2.63784347 2.601185422 2.502534691 2.333069612 1.698404871 1 10.28766701 -7.61430821 0.217974374 0.61160742 2.899238827 0.690304168 0.268288903 0.538156886 0.106814633 0.495905102 0.413493134 2.43E-08 7.61430821 2.287631407 CAPSAGS(ph)PAAAVGR ddPTM_HeLa_CUDC101_4h_R1 3 CAPSAGSPAAAVGR 14 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 CAPS(0.005)AGS(0.995)PAAAVGR;CAPS(0.009)AGS(0.991)PAAAVGR;CAPS(0.019)AGS(0.981)PAAAVGR ;; 133.98 0.00071199 86183000 4192.9 3120.97 3104.04 3232.57 3296.03 3460.8 3600 3601.1 3329.9 3967.5 TRUE FALSE FALSE 3701.414618 3217.123386 3271.853792 3364.408177 3052.888434 3394.791006 3738.853206 4011.034668 3192.640113 3943.901134 0.938516077 0.815721104 0.829598329 0.853066054 0.774078338 0.860769804 0.948008857 1.017022114 0.809513222 1 11.94540767 -7.609119197 2.25184975 0.977834243 0.868116244 0 0.084860966 0.244662634 2.571570994 0.013732143 0.014330152 2.46E-08 7.609119197 -0.109717999 RAS(ph)MQPIQIAEGTGITTR ddPTM_HeLa_CUDC101_4h_R1 1 RASMQPIQIAEGTGITTR 18 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 RAS(1)MQPIQIAEGTGITTR 86.617 0.0034828 14868000 874.08 641.45 587.2 555.6 918.35 798.14 675.9 657.49 640.04 836.97 TRUE FALSE FALSE 771.6216674 661.2123142 618.9458082 578.2597695 850.6051501 782.9168093 701.9696894 732.3360039 613.6572803 831.9916652 0.92743918 0.794734301 0.743932703 0.695030724 1.022372201 0.941015207 0.843722021 0.880220361 0.737576235 1 9.700425265 -7.608563475 2.308924681 0.973609788 0.847227778 0 0.116256065 0.282258452 3.123386874 0.018468212 0.01928907 2.46E-08 7.608563475 -0.12638201 DPAQPMS(ph)PGEATQSGARPADR ddPTM_HeLa_CUDC101_4h_R1 2 DPAQPMSPGEATQSGARPADR 21 1 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 DPAQPMS(0.58)PGEAT(0.21)QS(0.21)GARPADR;DPAQPMS(0.962)PGEAT(0.006)QS(0.032)GARPADR ; 90.978 0.0003556 73262000 2861.8 2451 2742.9 2409.4 2895.3 2766 2609.7 1815.7 2814 2460 TRUE FALSE FALSE 2526.344142 2526.512405 2891.189471 2507.665746 2681.719487 2713.243158 2710.357003 2022.391949 2698.005729 2445.367811 1.033114173 1.033182981 1.182312721 1.025475896 1.096652813 1.10954399 1.108363736 0.827029758 1.10331285 1 11.25583576 -7.608271727 1.5606437 1.011008685 1.063560506 0 0.092893 0.759839951 3.777283091 0.017247995 0.017762168 2.46E-08 7.608271727 0.052551821 TEAQDLCRAS(ph)PEPPGPESSSR ddPTM_HeLa_CUDC101_4h_R1 4 TEAQDLCRASPEPPGPESSSR 21 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 TEAQDLCRAS(1)PEPPGPESSSR;T(0.001)EAQDLCRAS(0.999)PEPPGPESSSR;TEAQDLCRAS(0.997)PEPPGPESS(0.002)S(0.001)R;TEAQDLCRAS(0.998)PEPPGPESSS(0.001)R ;;; 140.67 4.08E-07 701570000 7552.6 8337 7602.24 7598.59 8933.74 7626.08 7894.8 8476.1 7733.5 5622.25 TRUE FALSE FALSE 6667.295677 8593.853088 8013.24009 7908.493344 8274.715799 7480.62523 8199.305081 9440.984962 7414.721857 5588.808607 1.192972625 1.537689639 1.433801129 1.415058897 1.480586719 1.338500878 1.467093554 1.689266108 1.326708853 1 12.44832505 -7.607614054 1.042361776 1.047222246 1.478929045 0.461146485 0.132460336 0.149408838 0.334035647 0.023948411 0.02388658 2.47E-08 7.607614054 0.431706799 S(ph)VSDPVEDKKEQES(ph)DEEEEEEEEDEPSGATTR ddPTM_HeLa_CUDC101_4h_R1 1 SVSDPVEDKKEQESDEEEEEEEEDEPSGATTR 32 2 Q8NFC6;H0Y9Y2 Q8NFC6;H0Y9Y2 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 2 0 S(0.531)VS(0.488)DPVEDKKEQES(0.979)DEEEEEEEEDEPS(0.001)GAT(0.001)T(0.001)R 41.933 0.023644 6012300 496.01 464.04 513.75 339.24 676.9 430.55 352.22 425.05 367.79 415.39 TRUE FALSE FALSE 437.8684597 478.3365224 541.524879 353.0756735 626.9664356 422.3379761 365.8052434 473.4359739 352.6295405 412.9192418 1.060421543 1.158426331 1.311454697 0.85507198 1.51837544 1.022810112 0.885900211 1.146558276 0.853991543 1 8.689715839 -7.606643863 2.329986989 1.02208045 1.12563639 0.109533984 0.190071115 0.6207609 6.995470868 0.033395234 0.034913153 2.47E-08 7.606643863 0.103555939 DGKS(ph)PTVPCLQEEAGEPLGGK ddPTM_HeLa_CUDC101_4h_R1 2 DGKSPTVPCLQEEAGEPLGGK 21 1 A1L390-3;A1L390;G3V311;A1L390-2 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 DGKS(0.742)PT(0.258)VPCLQEEAGEPLGGK;DGKS(0.559)PT(0.441)VPCLQEEAGEPLGGK ; 67.778 0.003467 34896000 4309.4 3677.5 4299.5 4508.4 5014.2 4306.3 4011.2 2688.5 4785 3378.2 TRUE FALSE FALSE 3804.258665 3790.799416 4531.943975 4692.272039 4644.312456 4224.164502 4165.913328 2994.547973 4587.760275 3358.106316 1.132858316 1.128850328 1.349553453 1.397297047 1.383015312 1.257900764 1.240554329 0.891737095 1.366174815 1 11.71343219 -7.606193742 1.027197762 1.036246424 1.257688705 0 0.173450208 0.416383002 0.904859154 0.034063535 0.033942672 2.48E-08 7.606193742 0.221442281 LTLLQVAS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 LTLLQVASR 9 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 LTLLQVAS(1)R 84.821 0.035976 6258900 1824.2 1588.2 1494.7 1851.4 2099.5 2000.3 1804.6 866.78 1528.9 1464.3 TRUE FALSE FALSE 1610.370041 1637.13056 1575.508003 1926.908094 1944.624068 1962.14761 1874.204026 965.4507316 1465.878095 1455.590278 1.106334705 1.124719355 1.082384258 1.323798409 1.335969398 1.348008186 1.287590371 0.66327094 1.007067797 1 10.50738861 -7.604087997 0.770545575 1.023581707 1.19888253 0.095944226 0.191349364 0.886024045 1.127641951 0.053775508 0.051368596 2.49E-08 7.604087997 0.175300823 GLSEDTTEETLK ddPTM_HeLa_CUDC101_4h_R1 1 GLSEDTTEETLK 12 0 P19338;H7BY16 P19338 NCL Nucleolin 0 0 164.64 0.00031248 5675400 1777.8 1601.7 1466.3 1402.4 1597.8 1571.9 1600.6 1423.7 1536.5 1611.6 FALSE FALSE TRUE 1569.408979 1651.046479 1545.572613 1459.595934 1479.933477 1541.918626 1662.335678 1585.768253 1473.16482 1602.014132 0.9796474 1.030606688 0.964768402 0.911100536 0.92379552 0.962487531 1.037653567 0.989859092 0.919570427 1 10.64567116 -6.580311277 24.99933471 0.993353561 0.963724359 0.014197911 0.041925459 130.5143616 56809.84661 0.005980557 0.008457784 2.63E-07 6.580311277 -0.029629202 GLSEDTTEETLKESFDGSVR ddPTM_HeLa_CUDC101_4h_R1 2 GLSEDTTEETLKESFDGSVR 20 1 P19338;H7BY16 P19338 NCL Nucleolin 0 0 ; ; 170 1.04E-07 114947000 3129.7 2983.8 3144.8 2793.2 3604 3152.4 3279.9 3393.5 3380.4 3074.4 FALSE FALSE TRUE 2762.84131 3075.727341 3314.817401 2907.118769 3338.1401 3092.273222 3406.406842 3779.802323 3241.058481 3056.113332 0.904037583 1.006417959 1.084651333 0.951247043 1.092282824 1.011831986 1.114620589 1.236800443 1.060516456 1 11.57748233 -1.000000001 0.414445682 0.960652313 5.844827428 0.535385925 0.060561779 28.92913999 0.33386659 0.013618133 117.8691523 0.1 1.000000001 4.884175115 SRLTPVS(ph)PESSSTEEK ddPTM_HeLa_CUDC101_4h_R1 1 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 SRLTPVS(1)PESSSTEEK 168.16 9.52E-06 29948000 3710.7 4174.1 3284.7 4168.4 4620.3 4707.6 4858 5170 4143.2 1313.4 TRUE FALSE FALSE 3275.737371 4302.699073 3462.280818 4338.405369 4279.469674 4617.810373 5045.374687 5758.531902 3972.415542 1305.587838 2.509013392 3.295602905 2.651894201 3.322951732 3.277810614 3.536958784 3.864446756 4.410681329 3.042626031 1 10.35048381 -7.60090702 0.186795769 7.53E-19 4.924348159 0.41588799 0.665196252 0.490055811 0.081447286 0.986269395 0.8418822 2.51E-08 7.60090702 4.924348159 EWS(ph)WCGPERPAGCSLGLK ddPTM_HeLa_CUDC101_4h_R1 1 EWSWCGPERPAGCSLGLK 18 1 Q9H8X3 Q9H8X3 LINC00574 Putative uncharacterized protein LINC00574 1 0 EWS(1)WCGPERPAGCSLGLK 66.568 0.0032855 0 647.94 331.6 469.92 450.31 577.91 528.63 463.41 396.62 561.5 665.33 TRUE FALSE FALSE 571.9894554 341.816203 495.3252966 468.6755882 535.2787307 518.5472635 481.2838789 441.7696176 538.3547323 661.3725876 0.864852076 0.516828501 0.748935329 0.708640783 0.809345202 0.784047106 0.727704607 0.667958766 0.813996138 1 9.36931944 -7.60085771 2.912466666 0.948428063 0.717038606 0.431439445 0.091031982 0.119265623 2.130943901 0.016001747 0.016841425 2.51E-08 7.60085771 -0.231389457 GLTPSQIGVILR ddPTM_HeLa_CUDC101_4h_R1 2 GLTPSQIGVILR 12 0 J3KMX5;P62277 J3KMX5 RPS13 40S ribosomal protein S13 0 0 ; ; 163.66 0.00011728 2994670 415.4 664.21 409.74 237.07 389.19 354.08 337.788 378.84 456.31 393.58 FALSE FALSE TRUE 366.7074417 684.6735228 431.8917838 246.7387393 360.4802291 347.3265139 350.8165963 421.9656143 437.5007087 391.2389687 0.937297844 1.750013617 1.103907889 0.630659927 0.921381197 0.887760529 0.896681119 1.078536772 1.118244203 1 8.611906264 GALHT(ph)VSHEDIR ddPTM_HeLa_CUDC101_4h_R1 1 GALHTVSHEDIR 12 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2;H0YD72 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 GALHT(0.867)VS(0.133)HEDIR 99.991 0.0164 293870000 4188 3771.5 3811.2 3733.5 4520.3 3874 3608.2 3107.1 3394.5 3573.5 TRUE FALSE FALSE 3697.088989 3887.695445 4017.245 3885.768268 4186.846475 3800.109905 3747.369483 3460.799705 3254.577273 3552.244663 1.040775436 1.094433468 1.13090324 1.093890944 1.178648115 1.069777075 1.054930006 0.974257134 0.916203016 1 11.79451524 -7.599437668 1.690158139 1.013613741 1.0889181 0.34972901 0.058897628 0.314992874 1.836299816 0.010565367 0.010962029 2.52E-08 7.599437668 0.075304359 GLTSVINQK ddPTM_HeLa_CUDC101_4h_R1 1 GLTSVINQK 9 0 A0A5F9ZHM4;P07195 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 0 0 133.23 0.026683 732860 208.04 275.18 166.82 230.74 272.13 190.2 171.8 231 368.15 260.68 FALSE FALSE TRUE 183.6538666 283.6579696 175.8387938 240.1505745 252.0555121 186.5722519 178.4263835 257.2961063 352.9747012 259.1294638 0.70873402 1.09465734 0.678575069 0.926759046 0.972701091 0.719996288 0.688560772 0.992924936 1.362155797 1 8.017529253 -9.642287473 1.469530753 1.00005281 0.826722592 0.234253072 0.182873062 0.575510952 2.233009478 0.09701911 0.021962032 2.28E-10 9.642287473 -0.173330218 GLTSWPGK(ac)LVR ddPTM_HeLa_CUDC101_4h_R1 2 GLTSWPGKLVR 11 1 A0A0D9SEP6;A0A0D9SF16;A0A1B0GW10;E9PHH0;Q9P267 A0A0D9SEP6 MBD5 Methyl-CpG-binding domain protein 5 0 1 ; GLTSWPGK(1)LVR;GLTSWPGK(1)LVR 127.76 0.0012466 956670 78.38 0 0 0 0 74.089 0 0 0 0 FALSE TRUE FALSE 69.19241522 0 0 0 0 72.67587577 0 0 0 0 0 KPPAPPS(ph)PVQSQS(ph)PSTNWS(ph)PAVPVK ddPTM_HeLa_CUDC101_4h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVK 25 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 3 0 KPPAPPS(0.912)PVQS(0.169)QS(0.9)PS(0.194)T(0.371)NWS(0.455)PAVPVK 52.17 0.011515 78393000 2873.7 2090.3 1740.9 1735.4 2123 2288.6 1885.8 1781.2 2222.2 3017 TRUE FALSE FALSE 2536.849242 2154.699665 1835.01832 1806.177113 1966.39052 2244.948768 1958.535938 1983.964608 2130.599975 2999.05475 0.845882938 0.718459596 0.611865562 0.602248796 0.655670097 0.748552112 0.653051078 0.661529973 0.710423835 1 11.55029214 -7.599069124 0.962093264 0.962444694 0.654215683 0.364207458 0.091869419 0.120276431 0.230454065 0.013404279 0.013299501 2.52E-08 7.599069124 -0.308229011 GTQST(ph)EGS(ph)PVSK ddPTM_HeLa_CUDC101_4h_R1 1 GTQSTEGSPVSK 12 0 A0A087WXK8;Q9H4H8-2;Q9H4H8 A0A087WXK8 FAM83D Protein FAM83D 2 0 GT(0.003)QS(0.239)T(0.718)EGS(0.76)PVS(0.28)K 117.48 0.014309 114240000 4279.1 3266.3 3424.6 3092.8 3727.2 2996.8 3653 2583.4 4246.6 4207 TRUE FALSE FALSE 3777.510385 3366.930831 3609.744235 3218.937752 3452.251882 2939.641033 3793.897434 2877.483814 4071.553351 4181.976577 0.903283487 0.805105139 0.863167014 0.76971683 0.825507226 0.702931013 0.907201981 0.688067893 0.973595446 1 12.02996927 -7.598392061 0.455233423 1.001764312 0.768945075 0.629465453 0.061052445 0.361576523 0.193131471 0.029590831 0.025590488 2.52E-08 7.598392061 -0.232819236 S(ph)PLELEPEAK ddPTM_HeLa_CUDC101_4h_R1 4 SPLELEPEAK 10 0 A0A087WTQ7;A0A087WV56;A0A087WW71;A0A087X0X5;Q92466-3;Q92466-2;Q92466-5;Q92466-4;Q92466 A0A087WTQ7 DDB2 DNA damage-binding protein 2 1 0 S(1)PLELEPEAK;S(1)PLELEPEAK;S(1)PLELEPEAK;S(1)PLELEPEAK ;;; 134.75 0.0017936 183399000 16748.6 13649.4 12979.8 12319.4 11855.9 12949.2 12694 12434.4 12615.4 16877.4 TRUE FALSE FALSE 14785.3545 14069.92184 13681.52725 12821.83838 10981.31388 12702.21558 13183.61183 13849.88183 12095.38787 16777.01247 0.881286494 0.838642867 0.815492465 0.764250393 0.654545253 0.757120232 0.785814033 0.825527301 0.720950043 1 14.03419821 -7.59800833 0.585985389 0.985300442 0.75166789 0 0.093461361 0.230485216 0.183086477 0.018366463 0.016678999 2.52E-08 7.59800833 -0.233632552 ALPSLNTGSS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 ALPSLNTGSSSPR 13 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 ALPS(0.001)LNT(0.019)GS(0.19)S(0.395)S(0.395)PR 104.9 0.006377 157070000 4129.9 3692.9 4157.6 3644.9 4482.9 3843 3710.8 3258 3751.6 3410.9 TRUE FALSE FALSE 3645.799383 3806.673872 4382.372432 3793.554777 4152.205398 3769.701178 3853.926799 3628.877551 3596.95746 3390.611815 1.075262985 1.122710024 1.292501965 1.118840783 1.224618336 1.111805592 1.136646425 1.070272195 1.060857938 1 11.72732991 -7.597334333 1.41748308 1.023764287 1.158208376 0.397023063 0.061833602 0.232146728 0.948626064 0.012889028 0.01326551 2.53E-08 7.597334333 0.134444088 LAAAEETAVS(ph)PRKS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 LAAAEETAVSPRKSPR 16 2 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 2 0 LAAAEET(0.01)AVS(0.994)PRKS(0.996)PR;LAAAEET(0.01)AVS(0.993)PRKS(0.997)PR ; 77.795 0.0097255 54821000 12926.6 11534.3 12237.9 12088.3 12759.7 12367.6 10870.1 10731.5 12488.1 10868.3 TRUE FALSE FALSE 11411.36354 11889.65811 12899.51789 12581.31312 11818.44235 12131.70864 11289.3634 11953.13058 11973.33523 10803.65487 1.056250286 1.100521838 1.19399574 1.164542303 1.093930017 1.122926341 1.044957798 1.10639693 1.108267098 1 13.39923184 -7.596615109 1.457707462 1.017939891 1.119251913 0.185811147 0.048263669 0.213825793 0.924040713 0.009046243 0.009328783 2.53E-08 7.596615109 0.101312022 VIGAK(ac)K(ac)DQYFLDKK ddPTM_HeLa_CUDC101_4h_R1 2 VIGAKKDQYFLDKK 14 3 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 2 ; VIGAK(1)K(1)DQYFLDKK;VIGAK(1)K(1)DQYFLDKK 192.39 5.05E-15 6958160 2974.19 2906.02 2848.51 2724.44 3487.79 4567.64 6369.03 8394.3 2862.96 2832.41 FALSE TRUE FALSE 2625.559957 2995.551032 3002.509067 2835.554439 3230.50268 4480.519877 6614.685621 9349.873181 2744.947577 2815.562699 0.932516956 1.063926238 1.066397515 1.007100442 1.147373731 1.591340828 2.349329895 3.320783154 0.974919712 1 11.45920756 -4.391555918 1.026757995 0.97789807 4.235050479 0.996925685 0.041523187 0.06193674 0.058490768 0.007436457 0.209078179 4.06E-05 4.391555918 3.257152409 up GLVGEIIK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GLVGEIIKR 9 1 Q32Q12;P22392-2;J3KPD9;P22392;E7ERL0;E5RHP0;F6XY72;C9K028;P15531;P15531-2 Q32Q12;P15531 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 1 ; GLVGEIIK(1)R;GLVGEIIK(1)R 130.75 0.0026714 31908000 7689.6 3538.6 3007.68 2364.43 7903.8 6487.3 7760.3 6497.4 6845.5 4335.9 FALSE TRUE FALSE 6788.236745 3647.620072 3170.284279 2460.861675 7320.752421 6363.565561 8059.617371 7237.037753 6563.325593 4310.109874 1.574956774 0.846293987 0.735546047 0.570951031 1.698507146 1.476427689 1.869933159 1.679084284 1.522774543 1 12.07350893 GLVGEIIKR ddPTM_HeLa_CUDC101_4h_R1 3 GLVGEIIKR 9 1 Q32Q12;P22392-2;J3KPD9;P22392;E7ERL0;E5RHP0;F6XY72;C9K028;P15531;P15531-2 Q32Q12;P15531 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 0 ;; ;; 109.48 0.0021176 25938260 5556.99 6438.52 5114.29 5817.07 8180.4 6780.22 6097.42 6693.9 7412.83 6409.12 FALSE FALSE TRUE 4905.608056 6636.88317 5390.783987 6054.315258 7576.94819 6650.8986 6332.599532 7455.906518 7107.27001 6370.998269 0.769990486 1.041733633 0.846144318 0.950293031 1.189287435 1.043933512 0.993972885 1.17028858 1.11556615 1 12.63730373 -5.935655106 6.828445387 0.899141135 1.08714101 0.217470385 0.111709159 0.162164288 13.83701993 0.015631824 0.028455321 1.16E-06 5.935655106 0.187999875 GLVGPELHDR ddPTM_HeLa_CUDC101_4h_R1 2 GLVGPELHDR 10 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 143.89 0.00082935 35712000 10352.1 8572 8119.2 7625.4 8404 7765.9 7633.8 7965.1 8928 7871.8 FALSE FALSE TRUE 9138.642531 8836.09316 8558.148511 7936.396772 7784.053663 7617.778396 7928.238223 8871.814788 8559.984061 7824.978184 1.167880896 1.129216332 1.09369615 1.014238837 0.994770015 0.97352072 1.013196208 1.133781409 1.093930725 1 12.93387101 -6.261143504 24.99999374 1.086813862 1.020556027 0.273366048 0.056387761 40.05602279 3384361.178 0.011512321 0.018349627 5.48E-07 6.261143504 -0.066257834 GLVLDHGAR ddPTM_HeLa_CUDC101_4h_R1 4 GLVLDHGAR 9 0 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 0 ;;; ;;; 167.23 5.28E-07 30914200 30575.7 26400.4 21587.3 25470.3 24278.2 24010.9 21157.2 23253.3 22776.2 18540.3 FALSE FALSE TRUE 26991.6628 27213.76503 22754.37474 26509.08893 22487.24555 23552.93209 21973.24029 25900.36168 21837.3554 18430.02147 1.464548635 1.476599746 1.234636366 1.438364517 1.220142125 1.277965526 1.192252561 1.405335404 1.184879542 1 14.16977013 -9.425508266 1.158647552 1.000295877 1.343886125 0.398576961 0.11328705 0.266804965 0.641510409 0.073086967 0.018453742 3.75E-10 9.425508266 0.343590247 GLVPEDDTK(ac)EK ddPTM_HeLa_CUDC101_4h_R1 1 GLVPEDDTKEK 11 1 Q15459;Q15459-2;H7C1L2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 1 GLVPEDDTK(1)EK 190.57 3.06E-36 0 1421.9 608.09 712.04 575.97 1452.1 1133 1258.2 1317.7 1343.5 756.06 FALSE TRUE FALSE 1255.227037 626.8245321 750.5350362 599.4605462 1344.981476 1111.389913 1306.729195 1467.701642 1288.120361 751.5629215 1.67015562 0.834028016 0.998632336 0.797618575 1.789579339 1.478771612 1.738682362 1.952865954 1.713922181 1 9.553750083 -5.729722581 24.99998801 1.224714451 1.721225464 0.43456947 0.3149313 184.3564908 145313.6033 0.050521362 0.1010354 1.86E-06 5.729722581 0.496511014 KPPAPPS(ph)PVQSQSPS(ph)TNWSPAVPVKK ddPTM_HeLa_CUDC101_4h_R1 1 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3;Q8IYB3-2 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(0.952)PVQS(0.026)QS(0.044)PS(0.502)T(0.432)NWS(0.044)PAVPVKK 63.453 0.0013999 198060000 4069.9 3747.4 3227.8 3866 4594.7 3543.3 3285.4 3830.5 4077 3428 TRUE FALSE FALSE 3592.832492 3862.852952 3402.304632 4023.67219 4255.758135 3475.717456 3412.118979 4266.548637 3908.944334 3407.610104 1.054355511 1.133595932 0.998443052 1.180790075 1.248898203 1.019986838 1.001323178 1.252064792 1.147121946 1 11.73454456 -7.596571433 0.623477287 1.006936377 1.123887154 0 0.097767872 0.760528309 0.6695732 0.030264184 0.02787272 2.53E-08 7.596571433 0.116950777 GLVVDMDGFEEER ddPTM_HeLa_CUDC101_4h_R1 2 GLVVDMDGFEEER 13 0 P49588;P49588-2 P49588 AARS "Alanine--tRNA ligase, cytoplasmic" 0 0 ; ; 244.16 7.51E-55 40871000 6157.5 5251 4372 4895.8 5497.9 5375.2 4993.6 4379.3 5458.6 5796.2 FALSE FALSE TRUE 5435.727184 5412.777086 4608.363545 5095.471885 5092.33087 5272.677016 5186.204825 4877.82181 5233.594198 5761.723945 0.943420274 0.939437074 0.799823731 0.884365849 0.883820697 0.915121423 0.900113382 0.846590683 0.908338242 1 12.49228482 -7.511696711 1.065459947 0.983854685 0.877594974 0.337936785 0.042348989 0.21687948 0.497736923 0.008279069 0.008696604 3.08E-08 7.511696711 -0.106259711 GLVVDMDGFEEERK ddPTM_HeLa_CUDC101_4h_R1 2 GLVVDMDGFEEERK 14 1 P49588;P49588-2 P49588 AARS "Alanine--tRNA ligase, cytoplasmic" 0 0 ; ; 139.46 0.00056757 6979900 2852.8 2356.89 2579.7 2440 2552.2 2871.9 2732.5 2317.5 3055.1 3359.2 FALSE FALSE TRUE 2518.399109 2429.502987 2719.166385 2539.513747 2363.929291 2817.123292 2837.89344 2581.314832 2929.167485 3339.219329 0.754187988 0.727566161 0.814312004 0.760511214 0.707928728 0.843647276 0.849867337 0.773029435 0.877201285 1 11.70529514 -9.221901111 0.871958716 1.005447088 0.779055593 0.517074538 0.057091726 0.24047907 0.316793851 0.035857803 0.00910653 6.00E-10 9.221901111 -0.226391496 GLVYETSVLDPDEGIR ddPTM_HeLa_CUDC101_4h_R1 2 GLVYETSVLDPDEGIR 16 0 F8W642;F8VZK9;F8VX07;F8VRP1;F8VX68;F8VPF9;F8VPA1;F8VTT8;F8W1S4;F8W4S1;H0YH82;A0A0C4DGI3;B4DJV2;O75390 F8W642 CS "Citrate synthase;Citrate synthase, mitochondrial" 0 0 ; ; 242.97 6.50E-44 23970000 3386.5 3025.4 2369.72 2522.1 3346.1 2881.1 2632.56 2697.1 3161.6 2840.6 FALSE FALSE TRUE 2989.539604 3118.608988 2497.834231 2624.962139 3099.264869 2826.147818 2734.098721 3004.126962 3031.27751 2823.703985 1.058729817 1.104439065 0.884594931 0.929616615 1.097588446 1.000865471 0.968266764 1.063895854 1.073511078 1 11.46337314 GLWHEEMK ddPTM_HeLa_CUDC101_4h_R1 2 GLWHEEMK 8 0 E9PL69;P23921 E9PL69 RRM1 Ribonucleoside-diphosphate reductase large subunit 0 0 ; ; 143.11 0.0039491 25730000 12927.9 10251 9329.4 10695.1 10683.3 9624.9 9708.2 9527.7 9721.1 8397.4 FALSE FALSE TRUE 11412.51116 10566.82116 9833.775584 11131.29241 9895.214243 9441.321069 10082.64853 10612.29486 9320.392143 8347.451891 1.367185017 1.265873862 1.178057174 1.333495844 1.185417343 1.131042286 1.207871415 1.271321476 1.116555359 1 13.02712016 -9.505846331 1.258764349 1.000178386 1.251993414 0.458968895 0.07620986 0.254430597 0.722380609 0.054737667 0.01327925 3.12E-10 9.505846331 0.251815028 TDGS(ph)IS(ph)GDRQPVTVADYISR ddPTM_HeLa_CUDC101_4h_R1 2 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 0 T(0.234)DGS(0.775)IS(0.991)GDRQPVTVADYISR;T(0.026)DGS(0.905)IS(0.974)GDRQPVT(0.093)VADYIS(0.003)R ; 127.61 0.00024088 121313000 6627.6 5311.2 5460 4698.5 5750.8 6042.2 5276 6118.5 5709.1 6065.2 TRUE FALSE FALSE 5850.722775 5474.831777 5755.184116 4890.125139 5326.574941 5926.955102 5479.497087 6815.005308 5473.768482 6029.123921 0.970410105 0.908064231 0.954563912 0.811083866 0.883474119 0.983054119 0.908838027 1.130347526 0.907887871 1 12.55773267 -7.592062632 2.154646234 0.989415415 0.933899091 0 0.082123924 0.533096805 5.091290748 0.014687228 0.015410432 2.56E-08 7.592062632 -0.055516324 TLSPTPASATAPTSQGIPT(ph)SDEEST(ph)PKK ddPTM_HeLa_CUDC101_4h_R1 1 TLSPTPASATAPTSQGIPTSDEESTPKK 28 1 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 2 0 TLSPTPASATAPTSQGIPT(0.9)S(0.11)DEES(0.315)T(0.674)PKK 127.65 3.88E-14 18580000 2022.4 1597.3 1658.1 1159.8 1561.9 1640.4 1401.6 1212.5 1808.9 2124.2 TRUE FALSE FALSE 1785.337338 1646.51092 1747.741901 1207.101657 1446.681749 1609.112103 1455.660182 1350.526099 1734.336376 2111.565164 0.845504258 0.779758517 0.827699723 0.571662044 0.685122947 0.762047097 0.689374975 0.639585328 0.821351103 1 11.04409705 -7.590924097 0.438548589 1.000824468 0.660571951 0.535526539 0.078941788 0.292995434 0.148033389 0.035162702 0.030441555 2.56E-08 7.590924097 -0.340252517 GNVVPSPLPT(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 GNVVPSPLPTR 11 0 H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9;Q9Y2V2 H3BTK3 CARHSP1 Calcium-regulated heat stable protein 1 1 0 GNVVPS(0.02)PLPT(0.98)R 133.88 0.0084064 1336400000 7290.8 5439 5852.5 5511.5 5317.8 5781.7 5207.9 4156.9 6292.5 7578.1 TRUE FALSE FALSE 6436.183476 5606.569143 6168.903853 5736.282793 4925.516489 5671.423705 5408.770448 4630.104693 6033.120487 7533.025124 0.854395594 0.744265292 0.818914546 0.761484622 0.653856373 0.752874657 0.718007754 0.614640814 0.800889468 1 12.87901363 -7.590423872 0.210513405 1.097691521 0.588002258 0.460370732 0.075162035 0.575959641 0.110546872 0.118552563 0.101009151 2.57E-08 7.590423872 -0.509689263 GMFTKK(ac)LGNTNK(ac)NK ddPTM_HeLa_CUDC101_4h_R1 2 GMFTKKLGNTNKNK 14 3 A0A3B3ISZ1;Q8NB66 A0A3B3ISZ1 UNC13C Protein unc-13 homolog C 0 2 ; GMFTK(0.009)K(0.991)LGNTNK(1)NK;GMFTK(0.003)K(0.997)LGNTNK(1)NK 99.539 0.018974 7098100 2649.91 2633.6 2374.33 1983.71 2149.87 1601.2 1359.67 1140.96 1341.98 1357.12 FALSE TRUE FALSE 2339.291567 2714.738094 2502.693462 2064.614268 1991.278373 1570.659778 1412.112927 1270.842274 1286.663016 1349.04779 1.734031651 2.01233649 1.855155526 1.530423372 1.476062144 1.164272896 1.04674789 0.942029099 0.953756439 1 10.39772574 -5.058642092 2.390490027 1.46671973 0.988765035 0.305997019 0.318051876 0.37701857 4.17960527 0.055851646 0.193092227 8.74E-06 5.058642092 -0.477954695 LSGINEIPRPFS(ph)PPVTSNTSPPPAAPLAR ddPTM_HeLa_CUDC101_4h_R1 2 LSGINEIPRPFSPPVTSNTSPPPAAPLAR 29 1 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 LSGINEIPRPFS(0.958)PPVT(0.031)S(0.01)NT(0.001)SPPPAAPLAR;LSGINEIPRPFS(0.995)PPVT(0.004)S(0.001)NT(0.001)SPPPAAPLAR ; 130.27 5.04E-15 170371000 2138.56 1761 1611.91 1492.31 1725.56 1727.37 1466.82 1688.12 1987.99 2126.65 TRUE FALSE FALSE 1887.881239 1815.254323 1699.05473 1553.172852 1598.268877 1694.423295 1523.395739 1880.288757 1906.044211 2114.000591 0.893037233 0.858682032 0.803715353 0.734707861 0.756039938 0.801524513 0.720622191 0.88944571 0.901628987 1 11.04576006 -7.588835572 0.654963784 0.983087791 0.773273299 0.595771217 0.053203078 0.212974105 0.20365916 0.015156878 0.014183519 2.58E-08 7.588835572 -0.209814492 LHS(ph)PGATSTAELGSR ddPTM_HeLa_CUDC101_4h_R1 2 LHSPGATSTAELGSR 15 0 Q9BV73-2;Q9BV73;H7C0P0 Q9BV73-2 CEP250 Centrosome-associated protein CEP250 1 0 LHS(1)PGATSTAELGSR;LHS(1)PGATSTAELGSR ; 113.81 0.001173 30184000 2473.5 1534.98 1928.2 1439.15 2418.2 2083.67 1842.75 1861.04 2299.09 2433.77 TRUE FALSE FALSE 2183.56008 1582.270914 2032.444324 1497.844758 2239.814204 2043.927466 1913.825485 2072.893271 2204.320537 2419.293828 0.902560927 0.654021804 0.840098173 0.619124779 0.925813218 0.844844658 0.791067816 0.856817492 0.911142132 1 11.24037028 -7.586539707 2.957974078 0.962541512 0.792306575 0.350774343 0.091058599 0.16605524 3.054253524 0.016376229 0.017329931 2.59E-08 7.586539707 -0.170234937 EAAVSASDILQESAIHS(ph)PGTVEK ddPTM_HeLa_CUDC101_4h_R1 3 EAAVSASDILQESAIHSPGTVEK 23 0 F5H3K2;F5H8B7;E7ENF1;G5EA44;F5H7W8;Q96C57 F5H3K2 C12orf43 Uncharacterized protein C12orf43 1 0 EAAVSASDILQESAIHS(0.999)PGT(0.001)VEK;EAAVSASDILQES(0.002)AIHS(0.846)PGT(0.152)VEK;EAAVSASDILQESAIHS(0.999)PGT(0.001)VEK ;; 235.33 1.82E-46 319469900 11961.3 8010.1 7152.11 7211.39 12091.2 10754.6 9249.6 7136.77 12328.3 11926.8 TRUE FALSE FALSE 10559.21455 8256.881687 7538.774701 7505.501654 11199.25627 10549.47392 9606.36017 7949.191049 11820.12226 11855.85886 0.890632612 0.696438932 0.635869133 0.633062669 0.94461788 0.889811025 0.810262696 0.670486309 0.996985743 1 13.53331256 -7.582687667 2.237693501 0.960190128 0.76081482 0.470145322 0.101798584 0.213840457 2.200477331 0.02143483 0.022594133 2.61E-08 7.582687667 -0.199375308 GMMIDEADEFVAGPQNK ddPTM_HeLa_CUDC101_4h_R1 1 GMMIDEADEFVAGPQNK 17 0 G5E9X1;B3KQH5;Q9UL03-3;Q9UL03;A0A1W2PPI5;Q5JSJ4-4;Q5JSJ4 G5E9X1 INTS6;DDX26B Integrator complex subunit 6;Protein DDX26B 0 0 51.03 0.0031946 0 730.09 521.36 764.21 596.7 821.22 701.67 781.47 831.95 726.97 1339.6 FALSE FALSE TRUE 644.5099569 537.4224836 805.5255042 621.0360052 760.6402367 688.2868138 811.6115597 926.6558251 697.0039889 1331.632 0.484000052 0.403581833 0.604916001 0.466372095 0.57120904 0.516874643 0.609486375 0.695879812 0.523420877 1 10.37897973 -9.222227688 0.896674682 1.00795821 0.539580562 0 0.164944635 0.197483242 0.278156118 0.061589772 0.016064893 5.99E-10 9.222227688 -0.468377648 GMPPGGGGEVVFSCPVRK ddPTM_HeLa_CUDC101_4h_R1 1 GMPPGGGGEVVFSCPVRK 18 1 Q9Y2P8 Q9Y2P8 RCL1 RNA 3-terminal phosphate cyclase-like protein 0 0 59.261 0.023015 7762400 9469.1 5908.2 5898 5639.4 7086.2 6501.2 5799.1 7580 5506.1 6518.6 FALSE FALSE TRUE 8359.146452 6090.224639 6216.86372 5869.399108 6563.465144 6377.200442 6022.77323 8442.876561 5279.136227 6479.827077 1.290026162 0.939874562 0.959418152 0.905795639 1.012907453 0.984162134 0.929465117 1.302947819 0.814703257 1 12.6617396 -7.23207814 24.96067223 1.136956823 0.995979272 0 0.160540448 910.5455409 774077.1232 0.023951756 0.029332226 5.86E-08 7.23207814 -0.140977551 DVYVTTHT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 DVYVTTHTPR 10 0 P78317;D6RA71;H0YAI5 P78317 RNF4 E3 ubiquitin-protein ligase RNF4 1 0 DVYVT(0.001)T(0.034)HT(0.965)PR 97.69 0.026449 4281800 5213 5066.1 4436.3 4841.5 5244.9 5066.5 3721.6 2162.6 5361.3 4998.6 TRUE FALSE FALSE 4601.940042 5222.180536 4676.139797 5038.957297 4857.994176 4969.864954 3865.143359 2408.781642 5140.304945 4968.868105 0.926154598 1.050979906 0.941087527 1.014105666 0.977686281 1.000200619 0.777871998 0.48477472 1.034502192 1 12.27870153 -4.389346434 2.251544856 0.975420532 0.427842372 0.934398274 0.041724617 0.079341115 0.561856659 0.005756188 0.076604913 4.08E-05 4.389346434 -0.54757816 down PAPPQEESPS(ph)SEAK ddPTM_HeLa_CUDC101_4h_R1 2 PAPPQEESPSSEAK 14 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 PAPPQEES(0.276)PS(0.721)S(0.003)EAK;PAPPQEES(0.25)PS(0.733)S(0.017)EAK ; 222.88 9.72E-33 86847000 4590 3968.7 3685.3 3618.6 2600.9 3248.6 3024.4 3160.5 3523 5118.9 TRUE FALSE FALSE 4051.967158 4090.970943 3884.538465 3766.182149 2409.036789 3186.638368 3141.052121 3520.278545 3377.780449 5088.452555 0.796306365 0.803971522 0.763402709 0.740142923 0.473432102 0.626249009 0.617290244 0.691817111 0.6638129 1 12.31301127 -7.581910915 0.321637596 1.028668701 0.574185337 0.150514295 0.122826311 0.453330335 0.148350178 0.077327858 0.065618819 2.62E-08 7.581910915 -0.454483364 AGEPNS(ph)PDAEEANSPDVTAGCDPAGVHPPR ddPTM_HeLa_CUDC101_4h_R1 3 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 AGEPNS(0.995)PDAEEANS(0.005)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANSPDVTAGCDPAGVHPPR;AGEPNS(0.94)PDAEEANS(0.06)PDVTAGCDPAGVHPPR ;; 142.47 1.88E-16 2382408000 5537.2 6072.9 4687.25 5037.5 5476.4 5247.5 5087.38 5435.68 5094.6 4451.52 TRUE FALSE FALSE 4888.13781 6259.998851 4940.656913 5242.951024 5072.416883 5147.41268 5283.601951 6054.455839 4884.598432 4425.042161 1.104653387 1.414675527 1.116521998 1.1848364 1.146297978 1.16324602 1.194022963 1.368225571 1.103853535 1 12.11147549 -7.581805096 3.554149264 1.041511639 1.21646623 0.358843926 0.094756783 0.152216709 4.101358264 0.016968739 0.018021352 2.62E-08 7.581805096 0.174954591 MALPPQEDAT(ph)ASPPR ddPTM_HeLa_CUDC101_4h_R1 1 MALPPQEDATASPPR 15 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MALPPQEDAT(0.988)AS(0.012)PPR 113.43 0.0283 56656000 5215.4 4039 3585.8 3968 4334.8 4224 3927.6 4549 4366.3 4993.1 TRUE FALSE FALSE 4604.058718 4163.436803 3779.659194 4129.832191 4015.03044 4143.434238 4079.088848 5066.839772 4186.319266 4963.400819 0.927601636 0.83882744 0.761505938 0.832056959 0.808927303 0.834797428 0.821833456 1.020840338 0.843437679 1 12.27711325 -7.581418916 1.623816756 0.976001348 0.839230634 0.081362858 0.077354815 0.221457037 1.184983044 0.013148207 0.013721685 2.62E-08 7.581418916 -0.136770714 DY(ph)RKYS(ph)EDGSFKEPLESK ddPTM_HeLa_CUDC101_4h_R1 1 DYRKYSEDGSFKEPLESK 18 3 C9J587;A1A4G5 C9J587 LNP1 Leukemia NUP98 fusion partner 1 2 0 DY(0.989)RKY(0.472)S(0.536)EDGS(0.002)FKEPLESK 52.823 0.021483 46185000 3952 4180 4211.2 4018.2 5964.7 4543.1 4549.8 4236.4 4432.9 2470.9 TRUE FALSE FALSE 3488.752551 4308.780845 4438.87021 4182.079564 5524.695964 4456.447937 4725.28731 4718.654652 4250.173986 2456.202977 1.420384465 1.754244615 1.80720822 1.702660409 2.249283148 1.814364684 1.923817923 1.921117553 1.730383859 1 11.26221407 -7.579421585 0.551011338 1.03354021 1.976525766 0.355553229 0.252187074 0.167742671 0.12044395 0.053690536 0.048900999 2.63E-08 7.579421585 0.942985556 ALDISLS(ph)S(ph)GEEDEGDEEDSTAGTTK ddPTM_HeLa_CUDC101_4h_R1 1 ALDISLSSGEEDEGDEEDSTAGTTK 25 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 2 0 ALDIS(0.268)LS(0.874)S(0.835)GEEDEGDEEDS(0.016)T(0.005)AGT(0.002)TK 66.501 0.00087702 0 1161.9 738.07 717.61 920.11 888.72 686.78 789.47 756.64 1093.7 1188.4 TRUE FALSE FALSE 1025.703843 760.8090619 756.4061673 957.6360629 823.1608962 673.6808158 819.9201224 842.7728392 1048.617223 1181.331344 0.868260923 0.644026814 0.640299753 0.810641373 0.696807801 0.570272531 0.694064478 0.713409361 0.887657158 1 10.20619796 -7.579220507 1.369948666 0.960316975 0.679454735 0.698803012 0.06983351 0.132290326 0.502971033 0.015018294 0.015550629 2.63E-08 7.579220507 -0.28086224 PMEEDGEEKS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 PMEEDGEEKSPSK 13 1 Q12906-7;Q12906-4;Q12906-6;Q12906;Q12906-5;Q12906-2;Q12906-3 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 PMEEDGEEKS(0.99)PS(0.01)K 175.01 1.34E-06 40622000 2406.1 1639.5 1687.3 2147.8 1941.1 1623.8 1508.1 1691.4 2108.5 2401.7 TRUE FALSE FALSE 2124.060605 1690.011052 1778.520542 2235.396568 1797.90892 1592.82872 1566.267922 1883.942139 2021.586738 2387.414582 0.889690723 0.707883358 0.744956722 0.936325255 0.7530778 0.667177261 0.656051921 0.789113945 0.846768196 1 11.2212334 -7.577979569 0.345413687 1.026704163 0.693746972 0.320773626 0.090659188 0.591244013 0.213059344 0.072642394 0.062081579 2.64E-08 7.577979569 -0.332957191 SESELIDELS(ph)EDFDR ddPTM_HeLa_CUDC101_4h_R1 2 SESELIDELSEDFDR 15 0 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;P20810-2;E9PCH5;P20810-3;H0Y7F0;E7EQ12;E7EQA0;D6RC54;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;E7EVY3 CAST Calpastatin 1 0 SESELIDELS(1)EDFDR;SESELIDELS(1)EDFDR ; 149.44 5.99E-05 6707600 2370.5 1844.55 1899.64 1497.93 1838.57 1956.65 1697.14 2387.56 2233.4 2260.29 TRUE FALSE FALSE 2092.633583 1901.378399 2002.340284 1559.02206 1702.942354 1919.330161 1762.599258 2659.35018 2141.338307 2246.845695 0.931365064 0.846243426 0.89117837 0.693871441 0.757925815 0.854233188 0.784477217 1.183592708 0.953041997 1 11.13368533 -7.576928366 1.239892479 0.97978968 0.844652198 0.121214994 0.123734623 0.496812985 1.549364704 0.026097885 0.026868739 2.65E-08 7.576928366 -0.135137482 QVS(ph)ASELHTSGILGPETLR ddPTM_HeLa_CUDC101_4h_R1 6 QVSASELHTSGILGPETLR 19 0 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 0 QVS(0.997)AS(0.003)ELHTSGILGPETLR;QVS(0.905)AS(0.095)ELHTSGILGPETLR;QVS(0.973)AS(0.027)ELHTSGILGPETLR;QVS(0.845)AS(0.131)ELHT(0.017)S(0.008)GILGPETLR;QVS(0.97)AS(0.03)ELHTSGILGPETLR;QVS(0.912)AS(0.088)ELHTSGILGPETLR ;;;;; 281.36 4.97E-104 761711000 8919.79 7079.45 5475.95 5601.4 8857.26 7999.84 8175.73 6742.49 7619.38 8469.43 TRUE FALSE FALSE 7874.225738 7297.559463 5771.996421 5829.849303 8203.877576 7847.256381 8491.070645 7510.027808 7305.305931 8419.053454 0.935286346 0.866790964 0.685587335 0.692458996 0.974441797 0.932082974 1.008554072 0.892027572 0.867711076 1 13.03944233 -7.574839957 2.094110848 0.976542811 0.864544505 0.049054667 0.106266436 0.397862148 3.563419537 0.021619456 0.022819658 2.66E-08 7.574839957 -0.111998306 DEPAESPS(ph)ETPGPRPAGPAGDEPAESPSETPGPR ddPTM_HeLa_CUDC101_4h_R1 1 DEPAESPSETPGPRPAGPAGDEPAESPSETPGPR 34 1 Q9NZT2-2;Q9NZT2;A0A0A0MRN5 Q9NZT2-2 OGFR Opioid growth factor receptor 1 0 DEPAES(0.238)PS(0.703)ET(0.059)PGPRPAGPAGDEPAESPSETPGPR 83.741 5.48E-09 12582000 481.76 276.07 292.73 402.63 221.26 331.92 282.98 336.24 299.66 503.28 TRUE FALSE FALSE 425.2888231 284.5753895 308.5558693 419.0509917 204.9380906 325.589179 293.8946334 374.5162025 287.307888 500.2864682 0.850090598 0.568824879 0.616758375 0.837622079 0.409641483 0.650805488 0.587452694 0.748603503 0.574286746 1 8.96661062 -7.571144771 1.394241506 0.954534015 0.626579448 0 0.164561365 0.172745176 0.678967193 0.022979512 0.023905326 2.68E-08 7.571144771 -0.327954567 NLIEGFNS(ph)PGQETPLNTFC ddPTM_HeLa_CUDC101_4h_R1 1 NLIEGFNSPGQETPLNTFC 19 0 Q96T17;Q96T17-2;Q96T17-5;Q96T17-4 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 NLIEGFNS(1)PGQETPLNTFC 107.57 0.00022599 0 610.12 477.52 707 620.13 664.06 782.52 590.61 596.2 789.26 405.85 TRUE FALSE FALSE 538.6026585 492.2318252 745.2225586 645.4215818 615.0736168 767.5947348 613.3900255 664.0689981 756.7263687 403.4359862 1.33503871 1.220098955 1.847189106 1.599811628 1.524587885 1.902643198 1.520414754 1.646033128 1.875703692 1 8.656195967 -7.570343894 0.51092601 1.026866203 1.695806612 0 0.306647006 0.306464831 0.195200176 0.069846447 0.0632066 2.69E-08 7.570343894 0.668940409 ATLLEDQQDPS(ph)PSS ddPTM_HeLa_CUDC101_4h_R1 1 ATLLEDQQDPSPSS 14 0 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 ATLLEDQQDPS(0.754)PS(0.07)S(0.176) 107.93 0.0040772 5847700 3239.4 2405.1 2579.6 2404.1 3234.8 2851.1 2728.5 2568.8 2918.5 2992.3 TRUE FALSE FALSE 2859.682443 2479.19828 2719.060979 2502.149589 2996.175249 2796.720018 2833.739159 2861.221809 2798.198195 2974.501667 0.961398837 0.833483574 0.914123199 0.841199592 1.007286458 0.940231451 0.952676944 0.961916358 0.9407284 1 11.53843227 -7.569546852 4.201150558 0.984279016 0.921925945 0.123359663 0.051948016 0.213389455 8.178345823 0.009251638 0.009868524 2.69E-08 7.569546852 -0.062353071 AS(ph)SHSSQTQGGGSVTK ddPTM_HeLa_CUDC101_4h_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AS(0.441)S(0.441)HS(0.118)S(0.001)QTQGGGSVTK 95.236 0.0038966 5270500 5686.9 1208.1 3330.1 3152.1 3995.1 3284.3 4949.4 1756.2 5765.7 6563.9 TRUE FALSE FALSE 5020.290203 1245.320129 3510.135279 3280.656263 3700.389432 3221.65745 5140.300016 1956.118709 5528.035406 6524.857631 0.769409922 0.190857824 0.537963505 0.502793539 0.567121866 0.493751378 0.787802632 0.299794849 0.847226977 1 12.67173071 -7.569140515 3.06624532 0.910272565 0.499938803 0.55917773 0.158274876 0.122022859 2.406926488 0.029205116 0.031119018 2.70E-08 7.569140515 -0.410333762 GNDVAFHFNPR ddPTM_HeLa_CUDC101_4h_R1 2 GNDVAFHFNPR 11 0 P17931;G3V3R6 P17931 LGALS3 Galectin-3;Galectin 0 0 ; ; 106.67 0.007351 26896000 18594.2 16082.5 11479.9 13485.7 10374.5 12565.3 12625.8 14479.4 11453.9 13283.5 FALSE FALSE TRUE 16414.61606 16577.98276 12100.53812 14035.70514 9609.193804 12325.63784 13112.78134 16127.67637 10981.76539 13204.48915 1.243108755 1.255480812 0.916395779 1.0629495 0.727721739 0.93344299 0.9930548 1.221378289 0.831669084 1 13.68874087 -6.743649956 24.97836245 1.128560014 0.967363548 0.0641053 0.164133783 293.0873355 411526.7785 0.023979488 0.033869003 1.80E-07 6.743649956 -0.161196466 GNEFFCEVDEDYIQDK ddPTM_HeLa_CUDC101_4h_R1 2 GNEFFCEVDEDYIQDK 16 0 Q5SRQ6;P67870;Q5SRQ3;N0E472;A0A0G2JM12;N0E644;A0A0G2JM58 Q5SRQ6 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991;CSNK2B-LY6G5B-562 Casein kinase II subunit beta 0 0 ; ; 163.8 0.00019386 17380700 2867.6 2215.8 1753.87 2200.95 2386.1 2253.4 2081.5 2043.03 2557.7 1222.94 FALSE FALSE TRUE 2531.464275 2284.066172 1848.689517 2290.714254 2210.082157 2210.420149 2161.784152 2275.600277 2452.270523 1215.665898 2.082368419 1.878860116 1.520721705 1.884328792 1.818001278 1.818279309 1.778271608 1.871896119 2.01722408 1 10.24753107 -9.389143071 1.044477769 0.98628457 1.841899943 0 0.336646225 0.17179644 0.326674061 0.11103902 0.026672603 4.08E-10 9.389143071 0.855615372 GNHECASINR ddPTM_HeLa_CUDC101_4h_R1 2 GNHECASINR 10 0 P62136-3;P62136;P62136-2;E9PMD7;F8VR82;F8VYE8;F8W0W8;P36873;P62140;P36873-2;E7ETD8;C9JP48;A0A087WYY5 P62136-3 PPP1CA;PPP1CC;PPP1CB Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit 0 0 ; ; 86.189 0.031658 1982300 1565.74 688.52 1080.45 1133.74 1114.64 998.63 999.34 467.04 955.96 535.98 FALSE FALSE TRUE 1382.206331 709.7324851 1138.862395 1179.978818 1032.415228 979.5827966 1037.884879 520.2059458 916.5549242 532.7919671 2.594270214 1.332100574 2.137536723 2.214708349 1.937745483 1.83858402 1.948011499 0.976377231 1.72028668 1 9.057428521 VSAEAEVAPVS(ph)PEVTQEVVEEHCAS(ph)PEDK ddPTM_HeLa_CUDC101_4h_R1 5 VSAEAEVAPVSPEVTQEVVEEHCASPEDK 29 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VSAEAEVAPVS(1)PEVTQEVVEEHCAS(1)PEDK;VSAEAEVAPVS(0.843)PEVT(0.525)QEVVEEHCAS(0.632)PEDK;VSAEAEVAPVS(1)PEVT(0.004)QEVVEEHCAS(0.996)PEDK;VS(0.001)AEAEVAPVS(0.931)PEVT(0.133)QEVVEEHCAS(0.935)PEDK;VSAEAEVAPVS(0.993)PEVT(0.009)QEVVEEHCAS(0.998)PEDK ;;;; 133.34 7.23E-16 247398400 12508.72 10537.7 10139.18 9883.1 10779.9 10173.2 9633.38 9130.4 12407.3 12138.81 TRUE FALSE FALSE 11042.4668 10862.35405 10687.33474 10286.17554 9984.688254 9979.16316 10004.94269 10169.76783 11895.86584 12066.60782 0.915126021 0.900199477 0.885695044 0.852449644 0.827464388 0.827006505 0.829142941 0.842802549 0.985850043 1 13.55873254 -7.568537003 0.322345184 1.014545577 0.809484755 0.967362711 0.011010327 0.165861421 0.054529085 0.012700709 0.010914499 2.70E-08 7.568537003 -0.205060822 AASLNYLNQPS(ph)AAPLQVSR ddPTM_HeLa_CUDC101_4h_R1 2 AASLNYLNQPSAAPLQVSR 19 0 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 AAS(0.039)LNYLNQPS(0.961)AAPLQVSR;AAS(0.087)LNY(0.011)LNQPS(0.881)AAPLQVS(0.022)R ; 182.37 2.98E-11 213526000 2488.5 1792.81 1832.41 1839 2137.3 2267.6 1844.56 2049 2291.7 2366.4 TRUE FALSE FALSE 2196.801802 1848.044351 1931.475627 1914.002369 1979.635637 2224.349308 1915.705297 2282.249878 2197.235156 2352.324548 0.933885507 0.785624736 0.821092323 0.813664242 0.841565693 0.945596266 0.814388176 0.970210458 0.93406973 1 11.19987141 -7.567256104 2.760863555 0.974728799 0.854450642 0.370989717 0.058746386 0.161288284 2.549333542 0.01070967 0.011403154 2.71E-08 7.567256104 -0.120278157 HAS(ph)SSPESPKPAPAPGSHR ddPTM_HeLa_CUDC101_4h_R1 1 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HAS(0.777)S(0.18)S(0.043)PESPKPAPAPGSHR 100.59 0.00063621 2255800 999.27 523.01 713.15 348.72 1026.3 699.97 862.73 550.09 1044 1039 TRUE FALSE FALSE 882.1370854 539.1233182 751.7050462 362.9423089 950.5918937 686.6192385 896.0057851 612.7100221 1000.965878 1032.819982 0.854105363 0.521991565 0.72781807 0.35140907 0.920384879 0.664800498 0.867533356 0.593239899 0.969158126 1 10.0123731 -7.566555735 2.596886452 0.944978124 0.672231395 0.398675356 0.156501592 0.19367029 2.693349124 0.028275076 0.030082646 2.71E-08 7.566555735 -0.272746729 ANTPDS(ph)DITEKTEDS(ph)SVPETPDNER ddPTM_HeLa_CUDC101_4h_R1 1 ANTPDSDITEKTEDSSVPETPDNER 25 1 D6RAY8;Q9H4L7;Q9H4L7-2 D6RAY8 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 ANT(0.027)PDS(0.807)DIT(0.218)EKT(0.271)EDS(0.336)S(0.336)VPET(0.004)PDNER 68.705 0.00068267 13896000 2632.8 2618.9 2119.9 2263.5 2347.1 2063.7 1437.8 1136.4 3314.3 2604.8 TRUE FALSE FALSE 2324.187175 2699.585205 2234.508206 2355.815314 2173.959109 2024.338361 1493.256428 1265.763183 3177.683151 2589.306534 0.897609899 1.042590041 0.862975541 0.909824806 0.83959125 0.78180715 0.576701294 0.48884254 1.22723328 1 11.33835005 -4.386030921 0.653849949 0.957485717 0.198130234 0.770832282 0.09765991 0.545907342 0.176370529 0.00909016 0.298138719 4.11E-05 4.386030921 -0.759355483 down GNIWSAEK(ac)GGNSK ddPTM_HeLa_CUDC101_4h_R1 2 GNIWSAEKGGNSK 13 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 0 1 ; GNIWSAEK(1)GGNSK;GNIWSAEK(1)GGNSK 246.63 5.76E-41 4102500 2197.2 2175.9 2230.1 2717.6 2868 2644.9 2999.2 3340.5 1795.22 2013.9 FALSE TRUE FALSE 1939.647547 2242.9369 2350.665952 2828.435474 2656.433354 2594.452939 3114.880149 3720.769017 1721.220272 2001.921233 0.968893039 1.120392183 1.174205015 1.41286052 1.326941994 1.295981528 1.555945407 1.858599107 0.859784213 1 10.9671695 -1 0.268157687 0.948598701 7.220610233 0.898280613 0.091013511 10.3906102 0.131621761 0.044907614 30.48306619 0.1 1 6.272011533 KMS(ph)QPGSPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 KMSQPGSPSPK 11 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8Y8C1;A0A2R8YFD8;A0A2R8Y445;A0A2R8YER1;A0A2R8YE38;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8YD40;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 0 KMS(0.999)QPGS(0.036)PS(0.964)PK 121.42 0.0076973 8160700 6659.4 5520.1 5670.4 5414.7 4943.7 5591.8 4761.8 4708.4 6556.8 6751.1 TRUE FALSE FALSE 5878.795227 5690.167738 5976.958976 5635.53487 4579.0131 5485.145732 4945.464221 5244.385224 6286.525929 6710.944157 0.876001214 0.847893769 0.890628626 0.839752908 0.682320251 0.817343373 0.736925253 0.78146757 0.9367573 1 12.71230004 -7.564256173 0.21328474 1.064677485 0.693147366 0.702572085 0.048258918 0.817549957 0.160647033 0.122182251 0.106180289 2.73E-08 7.564256173 -0.371530119 GGPAS(ph)PGGLQGLETR ddPTM_HeLa_CUDC101_4h_R1 4 GGPASPGGLQGLETR 15 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 GGPAS(0.948)PGGLQGLET(0.052)R;GGPAS(1)PGGLQGLETR;GGPAS(0.999)PGGLQGLET(0.001)R;GGPAS(1)PGGLQGLETR ;;; 194.67 3.66E-16 251185000 7888.1 6227.6 5746.1 5565.1 5640.3 6441.4 5393.66 3682.06 7973 8579.4 TRUE FALSE FALSE 6963.468876 6419.464974 6056.751547 5792.068832 5224.226306 6318.541027 5601.695273 4101.210827 7644.349565 8528.369347 0.816506485 0.752718921 0.710188701 0.679153141 0.612570363 0.740885012 0.656830754 0.480890386 0.896343633 1 13.0580542 -7.562854106 0.072959445 1.613392852 6.67E-09 0.800698518 0.061964489 4.261404564 0.26195025 2.905392617 2.730138748 2.74E-08 7.562854106 -1.613392845 S(ph)GLNGSILAER ddPTM_HeLa_CUDC101_4h_R1 1 SGLNGSILAER 11 0 Q96H22-5;Q96H22-4;Q96H22;Q96H22-3 Q96H22-5 CENPN Centromere protein N 1 0 S(0.705)GLNGS(0.295)ILAER 90.861 0.023713 13270000 2224.6 1471.7 1646.8 1705 1973.8 1813.5 1637 1461.4 1688.4 2172.6 TRUE FALSE FALSE 1963.83576 1517.041333 1735.830989 1774.53727 1828.196706 1778.910509 1700.139638 1627.759869 1618.803437 2159.677279 0.909319082 0.7024389 0.803745544 0.821667796 0.84651384 0.823692746 0.787219301 0.753705141 0.749558026 1 11.07660003 -7.562591347 2.668458432 0.96555765 0.79625649 0.009250768 0.080626511 0.098273854 1.44354196 0.009002816 0.009597212 2.74E-08 7.562591347 -0.16930116 GSQPPPAAESQSS(ph)LRR ddPTM_HeLa_CUDC101_4h_R1 1 GSQPPPAAESQSSLRR 16 1 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;E9PII3;A0A2R8Y5B3;E9PJP4;E9PQD2;E9PIG0;E9PRG1;E9PQN0 O43491 EPB41L2 Band 4.1-like protein 2 1 0 GSQPPPAAES(0.146)QS(0.215)S(0.639)LRR 61.276 0.029684 10839000 3761.7 3267.6 3422.5 3514.4 3250.2 3962.2 3438.5 3084.1 2948.9 3168.7 TRUE FALSE FALSE 3320.759228 3368.270883 3607.530702 3657.732423 3010.439221 3886.627636 3571.124097 3435.181478 2827.345094 3149.852431 1.054258668 1.069342439 1.145301496 1.161239297 0.955739765 1.233907848 1.133743302 1.090584893 0.897611922 1 11.62106853 -7.559793775 0.527769796 1.003328009 1.127659551 0.38777696 0.075494884 0.652040919 0.436729941 0.027371508 0.025145015 2.76E-08 7.559793775 0.124331542 S(ph)VLADQGK ddPTM_HeLa_CUDC101_4h_R1 1 SVLADQGK 8 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 S(1)VLADQGK 110.53 0.0010733 0 2625.3 1586.3 2052.7 1965.6 2545.3 1913.1 2047.7 1469.2 2078.4 2597.8 TRUE FALSE FALSE 2317.566314 1635.172023 2163.675171 2045.765664 2357.53829 1876.610805 2126.680475 1636.447789 1992.727472 2582.34817 0.897464695 0.633211293 0.837871204 0.792211402 0.912943621 0.726707121 0.823545213 0.633705326 0.771672656 1 11.33446781 -7.558331177 3.207212295 0.959671383 0.775207991 0.144876905 0.103745132 0.140829365 3.043062773 0.015388636 0.016470755 2.76E-08 7.558331177 -0.184463392 ENSPNS(ph)FPR ddPTM_HeLa_CUDC101_4h_R1 1 ENSPNSFPR 9 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 ENS(0.115)PNS(0.885)FPR 118.23 0.0061401 32907000 3638.2 2435.9 2763.9 2861.9 2383.4 3116.3 2462.1 2120.5 2856.3 3607.3 TRUE FALSE FALSE 3211.735711 2510.947192 2913.324794 2978.620652 2207.58133 3056.86177 2557.064022 2361.889149 2738.562105 3585.843619 0.89567088 0.7002389 0.812451714 0.830661057 0.615637926 0.852480502 0.713099704 0.658670427 0.763714873 1 11.80809686 -7.55826915 0.520362004 0.998498978 0.716035476 0.131802392 0.103468392 0.324876126 0.212806696 0.03101037 0.028452941 2.77E-08 7.55826915 -0.282463502 HGS(ph)GADSDYENTQSGDPLLGLEGK ddPTM_HeLa_CUDC101_4h_R1 3 HGSGADSDYENTQSGDPLLGLEGK 24 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 HGS(1)GADSDYENTQSGDPLLGLEGK;HGS(0.961)GADS(0.039)DYENTQSGDPLLGLEGK;HGS(0.975)GADS(0.021)DY(0.004)ENTQSGDPLLGLEGK ;; 130.53 5.01E-09 91678600 10980.1 8896.9 7886.1 8084 10187.1 9395.6 8604 7578.1 10171 10442.7 TRUE FALSE FALSE 9693.029323 9171.002944 8312.44642 8413.700462 9435.617929 9216.394584 8935.859162 8440.760272 9751.747075 10380.58636 0.933765106 0.883476388 0.800768486 0.81052266 0.908967722 0.887849132 0.860824125 0.813129431 0.939421603 1 13.34160032 -7.557328063 1.177804185 0.980821974 0.850464947 0.630107646 0.03725794 0.174388068 0.489844603 0.008604344 0.008906798 2.77E-08 7.557328063 -0.130357027 SVS(ph)PAVHR ddPTM_HeLa_CUDC101_4h_R1 2 SVSPAVHR 8 0 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 0 S(0.011)VS(0.989)PAVHR;S(0.064)VS(0.936)PAVHR ; 92.838 0.025586 11913200 8500.6 5952.1 6385.2 6775.3 7385.3 5925.1 7382.3 5161.7 8203.8 8201.2 TRUE FALSE FALSE 7504.172554 6135.477146 6730.403226 7051.626019 6840.501133 5812.088589 7667.037784 5749.287064 7865.635892 8152.418898 0.920484171 0.752595913 0.825571319 0.864973465 0.839076257 0.712928109 0.940461706 0.705224687 0.964822342 1 12.99301247 -7.557031311 2.138282312 0.971344484 0.81186319 0.511933689 0.069491765 0.1619338 1.503480034 0.012531546 0.01332628 2.77E-08 7.557031311 -0.159481294 EEGS(ph)DIEDEDMEELLNDTR ddPTM_HeLa_CUDC101_4h_R1 2 EEGSDIEDEDMEELLNDTR 19 0 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 0 EEGS(1)DIEDEDMEELLNDTR;EEGS(1)DIEDEDMEELLNDTR ; 322.37 9.18E-168 59577000 3120.5 2292.73 2291.8 2579.6 2686.6 2660.66 2376.9 2235.3 2895 2963.1 TRUE FALSE FALSE 2754.71972 2363.366294 2415.70164 2684.807238 2488.41487 2609.912343 2468.577829 2489.757517 2775.666875 2945.475349 0.935237744 0.802371778 0.820139826 0.911502192 0.844826242 0.886075093 0.838091492 0.845282075 0.942349382 1 11.52428476 -7.556715294 2.416630078 0.975856973 0.852054031 0.681696942 0.033902325 0.10460038 1.247764376 0.006653845 0.007095829 2.78E-08 7.556715294 -0.123802942 IDENS(ph)DKEMEVEESPEK ddPTM_HeLa_CUDC101_4h_R1 2 IDENSDKEMEVEESPEK 17 1 Q8N3X1;Q8N3X1-2 Q8N3X1 FNBP4 Formin-binding protein 4 1 0 IDENS(1)DKEMEVEESPEK;IDENS(1)DKEMEVEESPEK ; 98.376 0.0021172 83423000 5451.8 4197.4 4686.5 4431.7 3801.2 3973.8 4214.7 3696.2 4345.6 5555.1 TRUE FALSE FALSE 4812.748268 4326.716919 4939.866366 4612.443881 3520.793049 3898.006386 4377.262391 4116.960467 4166.472529 5522.058018 0.871549747 0.783533405 0.894569805 0.835276244 0.637587117 0.705897398 0.79268678 0.745548209 0.754514443 1 12.43099033 -7.556370049 0.326366999 1.02121448 0.707083647 0.061247229 0.094859603 0.531430659 0.177851054 0.061892901 0.053826579 2.78E-08 7.556370049 -0.314130833 APAGPSLEETSVSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 APAGPSLEETSVSSPK 16 0 A0A087WXZ7;K7EIX2;Q6AI08 A0A087WXZ7 HEATR6 HEAT repeat-containing protein 6 1 0 APAGPSLEETSVS(0.081)S(0.918)PK 233.28 3.50E-43 58125000 2204 1818.9 1799.7 1947.3 1912.4 1860.8 1642.3 1861.4 1697.5 2035.8 TRUE FALSE FALSE 1945.650461 1874.938153 1896.997226 2026.719311 1771.326062 1825.30834 1705.644061 2073.294252 1627.528332 2023.690971 0.961436548 0.926494302 0.937394717 1.001496444 0.87529474 0.901969899 0.842838203 1.024511292 0.804237581 1 10.98277328 -7.556340242 0.413431364 1.001120645 0.912593965 0 0.079107989 0.974193489 0.451850728 0.030299346 0.026877241 2.78E-08 7.556340242 -0.088526681 GNPTVEVDLFTSK ddPTM_HeLa_CUDC101_4h_R1 2 GNPTVEVDLFTSK 13 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798 P06733 ENO1 Alpha-enolase;Enolase 0 0 ; ; 201.04 5.41E-16 12635210 1324.5 1288.26 1124.421 933.6 953.28 1130.06 1008.461 1085.63 1098.7 1390.45 FALSE FALSE TRUE 1169.244118 1327.949764 1185.2106 971.6762434 882.9584336 1108.505988 1047.357679 1209.213731 1053.411121 1382.179542 0.845942284 0.960765026 0.857493954 0.703002913 0.63881602 0.80199855 0.757758053 0.874860099 0.762137689 1 10.43272931 -6.480308162 4.343222537 0.927386503 0.752384956 0.341222259 0.085653077 0.133558733 5.523316525 0.012678238 0.019208476 3.31E-07 6.480308162 -0.175001547 LLS(ph)PQQPALQR ddPTM_HeLa_CUDC101_4h_R1 2 LLSPQQPALQR 11 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 LLS(1)PQQPALQR;LLS(1)PQQPALQR ; 158.34 0.00015251 51305000 4622.9 3879.3 3718.6 3211.9 3566.6 3210.2 2281.4 1596.96 3703 3723.2 TRUE FALSE FALSE 4081.01067 3998.816635 3919.638764 3342.895165 3303.499024 3148.970784 2369.394362 1778.751471 3550.360773 3701.054241 1.102661675 1.080453399 1.05906007 0.903227823 0.89258325 0.850830758 0.640194444 0.480606702 0.959283637 1 11.85372056 -4.380013551 0.651262867 1.05314269 0.158213286 0.922164514 0.052804055 0.502644188 0.16019414 0.009730657 0.322959542 4.17E-05 4.380013551 -0.894929404 down QASASYDS(ph)EEEEEGLPMSYDEK ddPTM_HeLa_CUDC101_4h_R1 2 QASASYDSEEEEEGLPMSYDEK 22 0 Q15059 Q15059 BRD3 Bromodomain-containing protein 3 1 0 QAS(0.001)AS(0.015)YDS(0.983)EEEEEGLPMSYDEK;QAS(0.003)AS(0.023)YDS(0.974)EEEEEGLPMSYDEK ; 147.85 1.65E-07 9137300 8389.8 6589 6485.2 6324.1 6827.8 6855.1 5742.9 5289.5 7105.3 8529.3 TRUE FALSE FALSE 7406.360362 6791.99928 6835.809529 6582.024133 6324.126797 6724.350389 5964.405577 5891.635299 6812.416527 8478.567344 0.873539132 0.80107865 0.806245826 0.776313246 0.745895685 0.793099838 0.703468562 0.694885711 0.803486751 1 13.04960479 -7.553905617 0.21196968 1.08281768 0.640314914 0.381892578 0.065478182 0.348450472 0.068166826 0.061999316 0.054340611 2.79E-08 7.553905617 -0.442502766 AVAS(ph)PEATVSQTDENKAR ddPTM_HeLa_CUDC101_4h_R1 2 AVASPEATVSQTDENKAR 18 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 0 AVAS(0.999)PEAT(0.001)VSQTDENKAR;AVAS(0.982)PEAT(0.018)VSQTDENKAR ; 124.82 4.45E-05 36325000 2788.7 2965.9 2650.3 3084.3 3887.6 3096.2 2710.6 2037.61 3079.8 2101.5 TRUE FALSE FALSE 2461.812813 3057.275864 2793.583235 3210.091085 3600.819493 3037.145144 2815.14875 2269.563286 2952.84934 2089.000185 1.178464622 1.463511533 1.337282426 1.536663859 1.723704727 1.453875 1.347605793 1.086435177 1.413522776 1 11.0285969 -7.550969129 1.196686106 1.050823383 1.440211333 0.101994922 0.195036766 0.247103146 0.715125823 0.036527564 0.037973035 2.81E-08 7.550969129 0.38938795 ATSSS(ph)NPS(ph)SPAPDWYK ddPTM_HeLa_CUDC101_4h_R1 1 ATSSSNPSSPAPDWYK 16 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 2 0 ATS(0.029)S(0.308)S(0.643)NPS(0.757)S(0.262)PAPDWYK 147.75 0.0020809 19141000 2629.8 1679.4 1523.6 1934.5 1770.2 1709.3 1689.5 1535.7 1752.3 2736.3 TRUE FALSE FALSE 2321.538831 1731.140323 1605.970425 2013.397272 1639.615873 1676.69795 1754.664581 1710.51788 1680.069452 2720.024366 0.853499277 0.636442947 0.590425014 0.740212954 0.602794553 0.616427548 0.645091494 0.628861234 0.61766706 1 11.40940386 -7.550687283 1.125961867 0.960354518 0.630869048 0.122240352 0.119262098 0.09995086 0.256894527 0.01224006 0.012665548 2.81E-08 7.550687283 -0.32948547 MESEGGADDS(ph)AEEGDLLDDDDNEDRGDDQLELIKDDEK ddPTM_HeLa_CUDC101_4h_R1 1 MESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEK 38 2 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2D6;G3V2Q1;P07910-4;G3V5V7 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 MES(0.125)EGGADDS(0.875)AEEGDLLDDDDNEDRGDDQLELIKDDEK 41.575 0.026394 13984000 1473.1 1081.8 971.2 995.44 1002.1 1214.7 928.58 873.92 1402.4 1521.8 TRUE FALSE FALSE 1300.425451 1115.128976 1023.70601 1036.038346 928.1770795 1191.531621 964.3956417 973.4035203 1344.592478 1512.748266 0.859644318 0.737154357 0.676719341 0.684871614 0.613570083 0.787660213 0.63751231 0.643466955 0.888840866 1 10.56295622 -7.550231774 0.725268973 0.97566227 0.663429516 0.794077497 0.055116508 0.139557761 0.158569969 0.014616079 0.01432636 2.82E-08 7.550231774 -0.312232754 RSSAWAEGGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 RSSAWAEGGSPR 12 1 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 0 RSSAWAEGGS(1)PR;RSSAWAEGGS(1)PR ; 104.09 0.0043862 22751000 3722.9 3596.7 3904.5 3961.6 3795.3 3661.2 3557.4 3402.3 3947.9 2905 TRUE FALSE FALSE 3286.507306 3707.510064 4115.58908 4123.171171 3515.32828 3591.36871 3694.61011 3789.604079 3785.165891 2887.720931 1.138097269 1.283887935 1.425203189 1.427828821 1.217336566 1.243668899 1.279420761 1.312316588 1.310779671 1 11.49571561 -7.549205902 1.454918701 1.04445245 1.315555009 0.191252516 0.108708182 0.148777705 0.633293824 0.016485435 0.017355389 2.82E-08 7.549205902 0.271102559 S(ph)PTVEPSTLPR ddPTM_HeLa_CUDC101_4h_R1 2 SPTVEPSTLPR 11 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 S(0.999)PT(0.001)VEPSTLPR;S(0.995)PT(0.005)VEPSTLPR ; 128.36 0.0024336 129222000 1686.16 1760.28 1525.84 1797.75 2402 2161.23 2010.32 1443.19 1966.65 1056.87 TRUE FALSE FALSE 1488.510881 1814.51214 1608.331526 1871.070016 2224.809245 2120.008139 2087.858716 1607.476916 1885.583855 1050.58369 1.416841794 1.727146687 1.530893294 1.780981404 2.117688734 2.01793361 1.987332123 1.530079832 1.794796428 1 10.03697538 -7.548862836 0.505336284 1.026502582 1.937770209 0.151840102 0.291393107 0.257949635 0.161362927 0.079364536 0.073045252 2.83E-08 7.548862836 0.911267627 IS(ph)FVEEDVHPK ddPTM_HeLa_CUDC101_4h_R1 3 ISFVEEDVHPK 11 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 IS(1)FVEEDVHPK;IS(1)FVEEDVHPK;IS(1)FVEEDVHPK ;; 124.48 0.0020986 20305400 17007 11536.7 12714.2 12553.5 12061.2 13372.5 12645.4 10940.7 15106.1 16616.1 TRUE FALSE FALSE 15013.46524 11892.13205 13401.56811 13065.48599 11171.46931 13117.44184 13133.13731 12186.14506 14483.42016 16517.2667 0.908955792 0.719981839 0.81136718 0.79101986 0.676350967 0.794165408 0.795115654 0.737782182 0.87686543 1 14.01168735 -7.548318005 1.2697476 0.973810428 0.759888759 0.630328827 0.055179645 0.121212017 0.393837178 0.010047438 0.01050099 2.83E-08 7.548318005 -0.21392167 KLFT(ph)CIMS(ph)S(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 KLFTCIMSSR 10 1 A0A087X172 A0A087X172 OR4C3 3 0 KLFT(1)CIMS(1)S(1)R 78.903 0.03176 6597300 1258.4 1253.7 1087.4 1125.3 1475.5 1203.9 830.1 1159.7 1300.4 1055.3 TRUE FALSE FALSE 1110.89226 1292.325011 1146.188133 1171.194598 1366.655305 1180.937613 862.1172351 1291.71556 1246.796962 1049.023029 1.058977953 1.231931974 1.092624377 1.116462238 1.302788659 1.125749942 0.821828703 1.231351005 1.188531546 1 10.03483063 -7.544696089 4.087432817 1.024122021 1.125425274 0 0.132487222 0.320663076 11.83669364 0.021807983 0.023473458 2.85E-08 7.544696089 0.101303253 KINS(ph)APPTETK ddPTM_HeLa_CUDC101_4h_R1 1 KINSAPPTETK 11 1 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 KINS(0.968)APPT(0.029)ET(0.003)K 81.128 0.019903 10997000 4043 3692.9 3439.9 3458 4222.9 3914.6 2890.6 1625.7 3874.8 4111 TRUE FALSE FALSE 3569.085669 3806.673872 3625.871399 3599.032187 3911.38508 3839.935527 3002.09141 1810.763117 3715.079104 4086.547589 0.873374307 0.931513408 0.887270078 0.88070238 0.957136799 0.939652713 0.734627787 0.443103396 0.90909968 1 11.99666682 -4.379333523 2.097852277 0.932140188 0.37183253 0.934573167 0.039093358 0.118760465 0.689989351 0.007548813 0.113745118 4.18E-05 4.379333523 -0.560307658 down VHGS(ph)PLELK ddPTM_HeLa_CUDC101_4h_R1 2 VHGSPLELK 9 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 VHGS(1)PLELK;VHGS(1)PLELK ; 86.463 0.021589 64866000 22584.1 18066.5 17865.3 18143 18664.4 16319.7 14346.6 7577.8 20536 25309 TRUE FALSE FALSE 19936.82603 18623.10745 18831.15216 18882.94996 17287.5644 16008.42891 14899.95317 8440.426121 19689.49739 25158.46094 0.792450145 0.740232381 0.748501755 0.750560617 0.687147137 0.636303983 0.592244224 0.335490559 0.782619312 1 14.61875605 -4.377708047 0.169766136 1.057393284 9.29E-17 0.725281047 0.084542331 4.573536874 0.142650808 0.138654877 1.082457816 4.19E-05 4.377708047 -1.057393284 down RSSQPS(ph)PTAVPAS(ph)DSPPTKQEVK ddPTM_HeLa_CUDC101_4h_R1 1 RSSQPSPTAVPASDSPPTKQEVK 23 2 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 RS(0.02)S(0.066)QPS(0.833)PT(0.083)AVPAS(0.527)DS(0.355)PPT(0.115)KQEVK 74.058 0.0087112 14780000 3367.3 3624.9 3442.5 3163.4 3248.7 3281.2 3461.4 3336.4 2993.9 2630.5 TRUE FALSE FALSE 2972.590198 3736.578872 3628.611963 3292.417125 3009.049873 3218.616577 3594.907357 3716.20229 2870.490175 2614.853669 1.136809388 1.428982018 1.38769217 1.259120984 1.150752682 1.230897398 1.374802499 1.42118939 1.097763217 1 11.3525145 -7.544660005 2.657601723 1.052267518 1.31345435 0.606644827 0.089721227 0.134600736 1.941776519 0.018759308 0.02013146 2.85E-08 7.544660005 0.261186832 TTS(ph)FFSR ddPTM_HeLa_CUDC101_4h_R1 1 TTSFFSR 7 0 Q9BZ67-2;Q9BZ67-3;Q9BZ67 Q9BZ67-2 FRMD8 FERM domain-containing protein 8 1 0 T(0.039)T(0.024)S(0.937)FFSR 98.582 0.023549 7721600 4114.4 3403 3741.4 3736.1 4840.6 4280.8 3483.7 2150.3 3370.2 3446.1 TRUE FALSE FALSE 3632.116269 3507.842396 3943.671401 3888.474307 4483.518582 4199.150872 3618.067476 2395.08146 3231.27893 3425.602444 1.060285403 1.024007442 1.151234408 1.135121302 1.308826303 1.225813836 1.056184287 0.699170876 0.943273185 1 11.74214201 -7.544568265 1.041674598 1.017937041 1.105888139 0.058400754 0.154072651 1.139141299 2.517676583 0.036226379 0.037343378 2.85E-08 7.544568265 0.087951098 IMS(ph)SPLSK ddPTM_HeLa_CUDC101_4h_R1 2 IMSSPLSK 8 0 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;E5RHH1;J3KSS0;J3QRC4 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 1 0 IMS(0.623)S(0.376)PLSK;IMS(0.767)S(0.233)PLSK ; 114.97 0.0093147 62699000 9342.2 10966.1 9911.7 9876.9 10634.1 8605.2 6551.9 3161.2 10258.7 10651.6 TRUE FALSE FALSE 8247.121478 11303.95254 10447.55648 10279.72267 9849.643629 8441.070147 6804.608978 3521.05823 9835.832044 10588.24381 0.77889418 1.067594659 0.986712874 0.970861916 0.930243372 0.797211539 0.642656998 0.332544121 0.928938946 1 13.3701757 -4.373778804 1.331276035 0.92148644 0.157650389 0.867829968 0.075737237 0.380651974 0.673889946 0.014911393 0.369368685 4.23E-05 4.373778804 -0.763836051 down GPPDFS(ph)SDEEREPTPVLGSGAAAAGR ddPTM_HeLa_CUDC101_4h_R1 3 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 P42166;P42167;G5E972;P42167-2;P42167-3 P42166;P42167 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 GPPDFS(0.51)S(0.442)DEEREPT(0.035)PVLGS(0.013)GAAAAGR;GPPDFS(0.56)S(0.44)DEEREPTPVLGSGAAAAGR;GPPDFS(0.537)S(0.454)DEEREPT(0.008)PVLGS(0.002)GAAAAGR ;; 103.24 8.12E-07 984600000 1379.19 1083.17 1019.24 1100.34 1023.43 1090.51 876.6 1053.73 1347.83 1376.97 TRUE FALSE FALSE 1217.523439 1116.541184 1074.343197 1145.216621 947.9336079 1069.710339 910.4107556 1173.682364 1292.271877 1368.779721 0.889495527 0.815720139 0.784891229 0.836669775 0.692539196 0.781506565 0.665125835 0.857466213 0.944105072 1 10.41867458 -7.544434061 0.504156276 0.994233155 0.742376097 0.672329239 0.056325709 0.264862959 0.165055074 0.022480784 0.020763292 2.85E-08 7.544434061 -0.251857058 ASLT(ph)RTPPRASLT(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 ASLTRTPPRASLTR 14 2 Q9UF83;A8MUU9 Q9UF83;A8MUU9 Uncharacterized protein DKFZp434B061;Putative uncharacterized protein ENSP00000383309 2 0 AS(0.11)LT(0.557)RT(0.333)PPRAS(0.001)LT(0.999)R 79.471 0.032645 10320000 288.48 201.84 148.76 189.58 255.55 252.76 173.06 250.57 124.25 289.48 TRUE FALSE FALSE 254.6648117 208.0584512 156.8024156 197.3118918 236.6985856 247.9390241 179.7349822 279.093876 119.1283624 287.7581601 0.884995969 0.723032324 0.544910405 0.685686522 0.822560811 0.861622913 0.624604293 0.969890396 0.413987782 1 8.16871303 -7.543761438 2.093907487 0.958122947 0.74088594 0 0.207333281 0.216491284 1.9157436 0.022441323 0.023975274 2.86E-08 7.543761438 -0.217237007 GNWDEQFDKENTEER ddPTM_HeLa_CUDC101_4h_R1 1 GNWDEQFDKENTEER 15 1 A0A2R8Y6A7;A0A2R8YD12;A0A024QZX5;A0A087X1N8;P35237 A0A2R8Y6A7 SERPINB6 Serpin B6 0 0 91.845 0.012341 19373000 1400.6 1212.7 1056.1 1217.2 1166.4 1287.7 1243.4 1047.8 1200.3 1214.1 FALSE FALSE TRUE 1236.423791 1250.06185 1113.195961 1266.842677 1080.356996 1263.139268 1291.358355 1167.077317 1150.823126 1206.878479 1.024480768 1.035781043 0.922376179 1.049685365 0.895166344 1.04661678 1.069998659 0.9670214 0.95355344 1 10.2370647 -10.0814604 2.846977113 0.999811254 1.007482695 0 0.056553468 3.310917127 48.85306081 0.044308884 0.007367553 8.29E-11 10.0814604 0.007671441 QDQS(ph)PSLR ddPTM_HeLa_CUDC101_4h_R1 1 QDQSPSLR 8 0 Q68D20;A0A2R8Y6S3;C9J167;P54278-3;P54278 Q68D20 PMS2CL;PMS2 Protein PMS2CL;Mismatch repair endonuclease PMS2 1 0 QDQS(0.931)PS(0.069)LR 95.618 0.022855 6637200 2627 1810.9 2182.2 2108.9 1910 2010.4 2412.4 1326.5 2250.3 2539.2 TRUE FALSE FALSE 2319.067042 1866.691683 2300.176333 2194.910057 1769.103105 1972.05497 2505.447076 1477.503398 2157.541682 2524.096725 0.918771067 0.739548395 0.911286921 0.869582388 0.700885623 0.781291362 0.992611357 0.585359263 0.854777735 1 11.30155148 -7.543002817 0.359372273 1.01845614 0.764267765 0.146138498 0.116441498 0.904788123 0.345033212 0.082925937 0.073460501 2.86E-08 7.543002817 -0.254188375 SQLDDHPES(ph)DDEENFIDANDDEDMEK ddPTM_HeLa_CUDC101_4h_R1 4 SQLDDHPESDDEENFIDANDDEDMEK 26 0 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 S(0.003)QLDDHPES(0.997)DDEENFIDANDDEDMEK;SQLDDHPES(1)DDEENFIDANDDEDMEK;S(0.001)QLDDHPES(0.999)DDEENFIDANDDEDMEK;SQLDDHPES(1)DDEENFIDANDDEDMEK ;;; 136.96 3.79E-11 95649500 7988.5 5905.63 5658.26 6212.8 5638.9 6910.8 5610.02 4962.49 6755 7833.2 TRUE FALSE FALSE 7052.10014 6087.57546 5964.162651 6466.184838 5222.929581 6778.988004 5826.400351 5527.399803 6476.556041 7786.607778 0.905670395 0.781800706 0.765951339 0.830423854 0.670758016 0.870595797 0.748259129 0.709859795 0.831755782 1 12.92677924 -7.541403612 0.778671147 0.982650457 0.7581879 0.382620075 0.072762739 0.193785623 0.249478135 0.014666252 0.014622005 2.87E-08 7.541403612 -0.224462557 GPAESPDEGITTTEGEGECEQTPEELEPVEK ddPTM_HeLa_CUDC101_4h_R1 2 GPAESPDEGITTTEGEGECEQTPEELEPVEK 31 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 0 0 ; ; 150.11 1.14E-16 14639400 13522.3 10702.5 10567.7 11378.5 11904.7 11060.8 10586.9 9894.6 11653.3 12334.4 FALSE FALSE TRUE 11937.23649 11032.23134 11139.02183 11842.56441 11026.514 10849.83367 10995.24028 11020.96127 11172.94604 12261.03444 0.973591303 0.899779818 0.908489564 0.965869925 0.899313517 0.884903612 0.896762857 0.89886064 0.911256395 1 13.58179308 -7.286625951 0.563194643 0.999482904 0.896079097 0.121580792 0.035676292 0.271167189 0.196125609 0.008193107 0.009521845 5.17E-08 7.286625951 -0.103403807 GSLSLS(ph)FEREPSTSDLGTTDVQK ddPTM_HeLa_CUDC101_4h_R1 1 GSLSLSFEREPSTSDLGTTDVQK 23 1 P57078-2;P57078 P57078-2 RIPK4 Receptor-interacting serine/threonine-protein kinase 4 1 0 GS(0.087)LS(0.25)LS(0.653)FEREPS(0.003)T(0.003)S(0.003)DLGTTDVQK 52.192 0.018651 8880200 1207.8 1234.2 1130.7 1343.6 1768.9 1367.4 1172 928.76 992.88 873 TRUE FALSE FALSE 1066.223515 1272.224239 1191.829062 1398.397816 1638.411771 1341.319123 1217.204433 1034.486284 951.9530662 867.8073572 1.228640788 1.466021495 1.373379763 1.611415027 1.887990183 1.545641567 1.40262055 1.192069041 1.096963581 1 9.761231007 -7.54140284 0.893530841 1.054111661 1.531626155 0.52780253 0.172440989 0.280806021 0.464570871 0.046441054 0.047168811 2.87E-08 7.54140284 0.477514494 NFTKPQDGDVIAPLIT(ph)PQKK ddPTM_HeLa_CUDC101_4h_R1 2 NFTKPQDGDVIAPLITPQKK 20 2 Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3 Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 1 0 NFTKPQDGDVIAPLIT(1)PQKK;NFTKPQDGDVIAPLIT(1)PQKK ; 119.28 2.26E-05 600090000 15417.1 12916.4 11315.8 12404.4 13457.4 12017.6 12306.7 15313.5 13218.2 14214.8 TRUE FALSE FALSE 13609.93091 13314.33897 11927.56638 12910.30505 12464.67441 11788.3843 12781.37354 17056.72694 12673.3402 14130.24974 0.963176955 0.942257867 0.844115752 0.913664322 0.882126972 0.834265814 0.904539819 1.207107253 0.896894283 1 13.78649934 -7.540013026 1.652368718 0.987300728 0.921765327 0 0.102885453 0.687376276 3.765542699 0.019331379 0.020540756 2.88E-08 7.540013026 -0.065535402 DPGPPRPPAGATQDEELQGS(ph)PLSR ddPTM_HeLa_CUDC101_4h_R1 2 DPGPPRPPAGATQDEELQGSPLSR 24 1 H3BPQ5;H3BME5;H3BQE6;H3BQP9;Q58EX7-3;Q58EX7-2;Q58EX7 H3BPQ5 PLEKHG4 Puratrophin-1 1 0 DPGPPRPPAGATQDEELQGS(0.988)PLS(0.012)R;DPGPPRPPAGATQDEELQGS(0.972)PLS(0.028)R ; 158.74 3.20E-09 23048000 978.02 778.99 695.6 830.76 908.78 788.55 738.11 750.72 811.12 915.55 TRUE FALSE FALSE 863.3779782 802.9897586 733.2062401 864.6419837 841.7411099 773.5097226 766.5791499 836.1789303 777.6852903 910.1042679 0.948658312 0.882305233 0.805628834 0.950047169 0.924884257 0.849913301 0.84229816 0.918772672 0.854501311 1 9.82988803 -7.539828648 1.736977579 0.982340793 0.88057505 0 0.057955633 0.191471042 1.159615598 0.008541709 0.009092351 2.89E-08 7.539828648 -0.101765743 KDEET(ph)EES(ph)EYDS(ph)EHENSEPVTNIR ddPTM_HeLa_CUDC101_4h_R1 1 KDEETEESEYDSEHENSEPVTNIR 24 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154;Q15154-4;Q15154-2;E7EV93 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 3 0 KDEET(0.954)EES(0.851)EY(0.565)DS(0.628)EHENS(0.001)EPVTNIR 52.227 0.032374 6918000 2451.4 1713.7 2078.7 1725.9 1576.1 1706.3 1991 1670.9 2000.2 2445.9 TRUE FALSE FALSE 2164.050608 1766.497066 2191.08081 1796.289662 1459.834243 1673.75517 2067.793537 1861.108502 1917.750909 2431.351678 0.890060713 0.726549385 0.901178069 0.738802896 0.600420851 0.688405213 0.850470771 0.765462487 0.788759161 1 11.24754287 -7.539789007 0.65525758 0.98410791 0.732719498 0.201924797 0.099234654 0.316826941 0.301814174 0.026398093 0.025626015 2.89E-08 7.539789007 -0.251388412 AEDKDEGIGS(ph)PDIWEDEKAEDLRR ddPTM_HeLa_CUDC101_4h_R1 1 AEDKDEGIGSPDIWEDEKAEDLRR 24 3 I3L254;Q01664 I3L254 TFAP4 Transcription factor AP-4 1 0 AEDKDEGIGS(1)PDIWEDEKAEDLRR 41.06 0.032866 11736000 4895.3 4187.3 3617.9 3799.1 4250.2 4094.4 4147.2 3745.1 4883.4 4605.3 TRUE FALSE FALSE 4321.480355 4316.30575 3813.494618 3954.043719 3936.671214 4016.306142 4307.158893 4171.427046 4682.104185 4577.907471 0.943985955 0.942855612 0.83302134 0.863722944 0.859928087 0.877323574 0.940857569 0.911208248 1.022760773 1 12.16047259 -7.539641947 1.007483285 0.984606587 0.883954475 0.658110716 0.034458522 0.233995374 0.484889851 0.008414136 0.008668074 2.89E-08 7.539641947 -0.100652112 CPT(ph)PVGDGSSSR ddPTM_HeLa_CUDC101_4h_R1 1 CPTPVGDGSSSR 12 0 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 1 0 CPT(0.656)PVGDGS(0.033)S(0.072)S(0.239)R 107.53 0.030762 12428000 1632.6 1656.1 1880.9 1813.6 1993 1785.6 1598 1633.3 2015.5 1162.8 TRUE FALSE FALSE 1441.229103 1707.122478 1982.587143 1887.566447 1845.980361 1751.542655 1659.635395 1819.22827 1932.420237 1155.883614 1.246863513 1.476898243 1.715213469 1.633007359 1.597029613 1.51532787 1.435815315 1.573885336 1.671812122 1 10.17478042 -7.539565639 1.200704632 1.072388031 1.57557767 0 0.206734624 0.115131433 0.334633849 0.021915525 0.02291251 2.89E-08 7.539565639 0.503189639 DIDEVSS(ph)LLR ddPTM_HeLa_CUDC101_4h_R1 2 DIDEVSSLLR 10 0 P50990-3;P50990-2;P50990;H7C4C8 P50990-3 CCT8 T-complex protein 1 subunit theta 1 0 DIDEVS(0.03)S(0.97)LLR;DIDEVS(0.029)S(0.971)LLR ; 121.61 0.004448 3138600 3988.6 3623.7 3154.6 3068.6 3521.7 3264.9 3164.2 3040.9 3976.4 3864.7 TRUE FALSE FALSE 3521.062354 3735.341902 3325.147218 3193.750772 3261.911207 3202.627472 3286.244254 3387.063764 3812.491109 3841.712593 0.916534558 0.972311648 0.865537736 0.831335165 0.849077366 0.833645775 0.855411272 0.881654648 0.992393631 1 11.90753388 -7.53714864 0.412107948 0.998023207 0.839425674 0.76670349 0.030264868 0.368087502 0.169969143 0.020341305 0.018365122 2.90E-08 7.53714864 -0.158597533 AHAS(ph)PFSGALTPSAPPGPEMNR ddPTM_HeLa_CUDC101_4h_R1 2 AHASPFSGALTPSAPPGPEMNR 22 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3 O15027 SEC16A Protein transport protein Sec16A 1 0 AHAS(0.807)PFS(0.191)GALTPS(0.002)APPGPEMNR;AHAS(0.972)PFS(0.028)GALTPSAPPGPEMNR ; 116.98 4.11E-06 0 1834.4 1340.4 1305.02 1105.39 1660.51 1328.47 1470.01 1724.78 1617.11 1761.58 TRUE FALSE FALSE 1619.374413 1381.696135 1375.573329 1150.472582 1538.017486 1303.131648 1526.708778 1921.121983 1550.452041 1751.102044 0.92477444 0.789043757 0.785547212 0.656999166 0.878314026 0.744178018 0.871855974 1.097093108 0.885415014 1 10.77404744 -7.535986812 2.209238943 0.972312047 0.823639467 0.132846 0.112604354 0.288944684 2.841487704 0.020915478 0.022439096 2.91E-08 7.535986812 -0.14867258 TES(ph)PQGLPTVQR ddPTM_HeLa_CUDC101_4h_R1 1 TESPQGLPTVQR 12 0 F5H212;P15822;A0A0D9SFF3;P15822-2;P15822-3 F5H212 HIVEP1 Zinc finger protein 40 1 0 T(0.208)ES(0.791)PQGLPTVQR 164.92 5.22E-05 14691000 2387.3 1893.7 2045.9 2024.1 1907.8 2160.9 2032.3 1740.2 1959.5 2172.2 TRUE FALSE FALSE 2107.464313 1952.042652 2156.507543 2106.651547 1767.065395 2119.684433 2110.686492 1938.297334 1878.728581 2159.279658 0.976003412 0.904024935 0.998716185 0.975627006 0.818358747 0.981662762 0.977495659 0.897659239 0.870071912 1 11.07633439 -7.535715943 0.597563705 0.998101394 0.932651036 0 0.064955245 0.825789638 0.674218993 0.01787437 0.017129291 2.91E-08 7.535715943 -0.065450358 LQLELS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 LQLELSK 7 0 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LQLELS(1)K 107.21 0.014849 12124000 1813.2 1240.3 1315.5 1370.9 1540.1 1531.1 1536.6 1292.2 1943.3 1739.3 TRUE FALSE FALSE 1600.659445 1278.512173 1386.619909 1426.811228 1426.489891 1501.896818 1595.867177 1439.298825 1863.196351 1728.954566 0.925796129 0.739471238 0.801999044 0.825245067 0.825059212 0.868673387 0.923024357 0.832467696 1.077643327 1 10.75568424 -7.535372539 3.446646222 0.97026035 0.833940664 0.642384747 0.057237466 0.115428757 2.879926475 0.009492318 0.010254702 2.91E-08 7.535372539 -0.136319685 WLIS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 1 WLISPVK 7 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 WLIS(1)PVK 84.213 0.040027 81845000 9614.6 8211.5 7079.4 7533.3 8532.9 8531.2 8216.8 5944.8 10322 9052.9 TRUE FALSE FALSE 8487.591163 8464.486582 7462.133778 7840.540536 7903.444967 8368.481574 8533.724728 6621.532002 9896.522791 8999.052948 0.943164932 0.940597486 0.829213232 0.871262852 0.878252969 0.929929141 0.948291423 0.735803205 1.099729366 1 13.13555747 -7.534498305 0.677738251 0.990628691 0.871026823 0.482190855 0.067039683 0.437506776 0.441225385 0.017327788 0.016982641 2.92E-08 7.534498305 -0.119601868 SFTETMSSLS(ph)PGKPWQTK ddPTM_HeLa_CUDC101_4h_R1 1 SFTETMSSLSPGKPWQTK 18 1 F8VQQ3;Q9HB07 F8VQQ3 C12orf10 "UPF0160 protein MYG1, mitochondrial" 1 0 S(0.001)FT(0.001)ET(0.008)MS(0.095)S(0.331)LS(0.561)PGKPWQT(0.002)K 57.248 0.027793 18119000 846.28 540.6 718.24 609.12 534.47 772.52 731.44 551.48 764.07 823.11 TRUE FALSE FALSE 747.0803413 557.2552452 757.070227 633.9625464 495.0432129 757.7854681 759.6518858 614.258254 732.5747112 818.2141051 0.913062164 0.681062868 0.925271542 0.774812537 0.60502894 0.926145691 0.928426779 0.750730463 0.89533376 1 9.676334598 -7.534053255 3.545897528 0.965024441 0.804395201 0.255175142 0.105418045 0.191018374 5.072484666 0.018767898 0.020289049 2.92E-08 7.534053255 -0.160629239 GPELPLVPVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GPELPLVPVKR 11 1 Q96DI7;Q96DI7-2 Q96DI7 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein 0 1 ; GPELPLVPVK(1)R;GPELPLVPVK(1)R 114.5 0.0038037 7138100 1696.93 1582.42 1578.27 1551.13 2024.76 1812.17 2201.63 2869.7 1513.88 1902.41 FALSE TRUE FALSE 1498.018438 1631.172485 1663.59605 1614.391786 1875.397489 1777.605877 2286.547607 3196.375048 1451.477226 1891.094381 0.792143667 0.862554773 0.879700171 0.853681235 0.991699572 0.939987922 1.209113427 1.690225026 0.767532938 1 10.88500565 -4.154534904 1.321379646 0.89449021 2.193509858 0.927080775 0.070199342 0.362500785 0.454187725 0.012031215 0.673193247 7.01E-05 4.154534904 1.299019648 GPEVSGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GPEVSGKR 8 1 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 0 1 ; GPEVSGK(1)R;GPEVSGK(1)R 112.41 0.0041932 3047000 963.98 815.27 679.79 1274.87 676.87 1441.84 2143.2 2519.8 202.933 112.69 FALSE TRUE FALSE 850.9837257 840.3875024 716.5415037 1326.864709 626.9386486 1414.339304 2225.863942 2806.643847 194.5680158 112.0197149 7.59673176 7.502139274 6.396566037 11.84492132 5.596681346 12.62580704 19.87028752 25.05490975 1.736908687 1 6.807608851 -1 0.305866968 3.233241711 200 0.883710082 2.477874894 12.82011767 0.163958791 1.032459428 1408.823783 0.1 1 196.7667583 GPFVEAEVPDVDLECPDAK ddPTM_HeLa_CUDC101_4h_R1 4 GPFVEAEVPDVDLECPDAK 19 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ;;; ;;; 302.28 2.97E-123 45243600 12476.7 11281.2 10550.8 10475.9 11619.4 10926.8 11484.5 11753 11428.6 10518.8 FALSE FALSE TRUE 11014.20014 11628.7604 11121.20816 10903.15248 10762.26001 10718.3895 11927.46101 13090.91401 10957.50827 10456.23371 1.053362085 1.112136619 1.063595982 1.04274185 1.029267355 1.025071722 1.140703368 1.251972209 1.04794026 1 13.35207567 -4.475000763 2.410927763 1.036014037 1.26077989 0.818606357 0.02998535 0.126512366 1.185025228 0.005185106 0.048135434 3.35E-05 4.475000763 0.224765853 SVSSPTSSNT(ph)PTPTK ddPTM_HeLa_CUDC101_4h_R1 1 SVSSPTSSNTPTPTK 15 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 SVSSPT(0.002)S(0.001)S(0.007)NT(0.99)PTPTK 142.95 0.0018002 32141000 11623 8728.4 9517.5 8869 10619 8029.7 9377 11428 9231.3 10793 TRUE FALSE FALSE 10260.56956 8997.311658 10032.04484 9230.716155 9835.657526 7876.546851 9738.674031 12728.91733 8850.781907 10728.80276 0.956357367 0.838612832 0.935057254 0.860367775 0.916752572 0.734149656 0.907713027 1.186424769 0.824955226 1 13.38920147 -7.533450996 3.735142186 0.982304192 0.903042542 0 0.11893343 0.381448076 11.39459338 0.019016783 0.020566668 2.93E-08 7.533450996 -0.07926165 VSAEAEVAPVS(ph)PEVT(ph)QEVVEEHCASPEDK ddPTM_HeLa_CUDC101_4h_R1 1 VSAEAEVAPVSPEVTQEVVEEHCASPEDK 29 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 VSAEAEVAPVS(0.988)PEVT(0.666)QEVVEEHCAS(0.346)PEDK 68.309 0.00010883 269910000 2956.8 2162.4 2359.2 2043.6 2417 2349.7 1976.2 2147.2 2630.1 2882.9 TRUE FALSE FALSE 2610.208386 2229.020981 2486.745488 2126.946841 2238.702725 2304.883387 2052.422696 2391.628569 2521.686165 2865.752383 0.910828305 0.777813531 0.867746112 0.742194913 0.781191962 0.804285604 0.716189825 0.834555206 0.879938609 1 11.48469824 -7.530529668 0.673137375 0.987259673 0.771697093 0.550399069 0.054382767 0.175478805 0.17484658 0.012498012 0.012270614 2.95E-08 7.530529668 -0.215562581 ETPPNGNLS(ph)PAPR ddPTM_HeLa_CUDC101_4h_R1 4 ETPPNGNLSPAPR 13 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 ETPPNGNLS(1)PAPR;ETPPNGNLS(1)PAPR;ET(0.001)PPNGNLS(0.999)PAPR;ETPPNGNLS(1)PAPR ;;; 118.52 0.0023802 121823000 3922.78 3748.01 3808.21 3564.53 3798.2 3356.31 4065.17 2744.68 3559.54 3307.88 TRUE FALSE FALSE 3462.957675 3863.481746 4014.093352 3709.906941 3518.014353 3292.293979 4221.964969 3057.123277 3412.814255 3288.204583 1.053145444 1.174951755 1.220755355 1.128246995 1.069889134 1.001243656 1.283972716 0.92972417 1.037895961 1 11.68308435 -7.527517043 3.306335931 1.021234836 1.120346734 0.139685227 0.097079182 0.285307169 6.454959137 0.016571591 0.017951169 2.97E-08 7.527517043 0.099111898 GYDS(ph)EDDTWEPEQHLVNCEEYIHDFNRR ddPTM_HeLa_CUDC101_4h_R1 1 GYDSEDDTWEPEQHLVNCEEYIHDFNRR 28 1 Q9Y232-2;Q9Y232 Q9Y232-2 CDYL Chromodomain Y-like protein 1 0 GYDS(1)EDDTWEPEQHLVNCEEYIHDFNRR 119.6 3.63E-13 23055000 394.21 434.46 331.64 471.26 507.64 470.79 493.05 309.15 356.1 271.11 TRUE FALSE FALSE 348.0013014 447.8451976 349.5694616 490.4800198 470.1924086 461.8104651 512.0671037 344.3423864 341.4214073 269.4974257 1.291297312 1.66177913 1.297116144 1.819980353 1.744700928 1.7135988 1.900081615 1.277720503 1.266881887 1 8.074127682 -7.527254772 0.621467497 1.037994524 1.703519775 0.490334221 0.205987996 0.281696201 0.245215441 0.061710435 0.059933955 2.97E-08 7.527254772 0.665525251 AVS(ph)PAPQSSSR ddPTM_HeLa_CUDC101_4h_R1 2 AVSPAPQSSSR 11 0 Q9P275;A0A075B784 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36;Ubiquitin carboxyl-terminal hydrolase 1 0 AVS(1)PAPQSSSR;AVS(1)PAPQSSSR ; 147.96 2.14E-06 0 4129.2 3324 3104.7 3191.9 3712.9 3186.8 3501.7 2797.6 3515.3 3892.1 TRUE FALSE FALSE 3645.181435 3426.4085 3272.549473 3322.079479 3439.006764 3126.0171 3636.761742 3116.067476 3370.397846 3868.949616 0.942163067 0.885617245 0.845849597 0.858651523 0.888873494 0.807975655 0.939986845 0.805403995 0.871140279 1 11.91772623 -7.526072112 0.913208157 0.986374556 0.857977764 0.199098595 0.05234928 0.194536491 0.33441052 0.008640289 0.008875749 2.98E-08 7.526072112 -0.128396792 GTLDEEDEEADS(ph)DTDDIDHR ddPTM_HeLa_CUDC101_4h_R1 7 GTLDEEDEEADSDTDDIDHR 20 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 0 GTLDEEDEEADS(0.994)DT(0.006)DDIDHR;GTLDEEDEEADS(0.992)DT(0.008)DDIDHR;GTLDEEDEEADS(0.998)DT(0.002)DDIDHR;GTLDEEDEEADS(0.999)DT(0.001)DDIDHR;GTLDEEDEEADS(1)DTDDIDHR;GTLDEEDEEADS(0.973)DT(0.027)DDIDHR;GTLDEEDEEADS(0.983)DT(0.017)DDIDHR ;;;;;; 179.17 8.15E-09 1587296000 25714.8 22137.9 20422.4 19346.7 22310 21608.7 20228.8 19296.8 23646.7 24590.6 TRUE FALSE FALSE 22700.55013 22819.94246 21526.49672 20135.74205 20664.23575 21196.55005 21009.03159 21493.46971 22671.97302 24444.33402 0.928663064 0.933547318 0.880633389 0.823738623 0.845358918 0.86713551 0.859464266 0.879282279 0.927493995 1 14.57721248 -7.523075496 0.55227307 0.991349021 0.851629122 0.667406924 0.02868096 0.20410348 0.146544485 0.009413927 0.008992617 3.00E-08 7.523075496 -0.139719899 EHPGQPEDS(ph)PEAEASTLDVFTER ddPTM_HeLa_CUDC101_4h_R1 1 EHPGQPEDSPEAEASTLDVFTER 23 0 F8VW41;Q86VP3-4;Q86VP3;Q86VP3-3;Q86VP3-2 F8VW41 PACS2 Phosphofurin acidic cluster sorting protein 2 1 0 EHPGQPEDS(1)PEAEASTLDVFTER 71.202 0.0012186 3967200 1124.8 875.81 745.81 1006.6 1074.9 815.28 1043.8 933.05 995.65 1034.9 TRUE FALSE FALSE 992.9526491 902.792668 786.1307446 1047.653499 995.6067685 799.7298923 1084.059716 1039.26464 954.6088856 1028.744369 0.965208344 0.877567543 0.764165295 1.018380786 0.967788305 0.777384467 1.053769769 1.010226323 0.927935952 1 10.00666882 -7.518324294 4.006939683 0.985684768 0.922457193 0.025153845 0.093818537 0.406424969 14.14699585 0.016499097 0.017960393 3.03E-08 7.518324294 -0.063227575 ELSKEDLSPAFDHS(ph)PNK ddPTM_HeLa_CUDC101_4h_R1 2 ELSKEDLSPAFDHSPNK 17 1 K7EIY0;K7ENP9;K7EIE9;D3DUJ3;K7EQG9;P17706-3;P17706-2;P17706-4;P17706 K7EIY0 PTPN2 Protein-tyrosine-phosphatase;Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 2 1 0 ELSKEDLSPAFDHS(1)PNK;ELSKEDLSPAFDHS(1)PNK ; 166.61 5.42E-06 67871000 7262.9 5370.3 5370.4 5432.7 5935.5 5636.6 4645.1 5334.5 6130.7 7073.2 TRUE FALSE FALSE 6411.553872 5535.752578 5660.740069 5654.268988 5497.64999 5529.091246 4824.263063 5941.757917 5877.989951 7031.128292 0.911881224 0.787320661 0.805096968 0.804176621 0.781901533 0.786373256 0.68612929 0.845064643 0.835995264 1 12.7795405 -7.516148264 0.682728954 0.987356841 0.767106644 0.380503466 0.062758158 0.16761376 0.170852903 0.012126362 0.012057025 3.05E-08 7.516148264 -0.220250197 QIASDK(ac)DAR ddPTM_HeLa_CUDC101_4h_R1 2 QIASDKDAR 9 1 A0A088AWL3;O75376;E7EVK1 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 0 1 ; QIASDK(1)DAR;QIASDK(1)DAR 123.86 0.0019576 2250090 1351.34 1662.29 1855.82 2156.93 2337.3 2115.22 2195.6 2948.2 462.41 688.75 FALSE TRUE FALSE 1192.937974 1713.503185 1956.151243 2244.898928 2164.882036 2074.875703 2280.285027 3283.811171 443.3492641 684.6532844 1.742397212 2.502731271 2.857141399 3.278884334 3.162012197 3.03054955 3.330569033 4.796312595 0.647552965 1 9.419229767 -4.368242799 0.159478759 0.269702037 7.563202166 0.900037936 0.367226236 4.612668404 0.132835991 1.006622811 7.173099594 4.28E-05 4.368242799 7.29350013 up GPGTSFEFALAIVEALNGK ddPTM_HeLa_CUDC101_4h_R1 2 GPGTSFEFALAIVEALNGK 19 0 Q99497;K7ELW0;K7EN27 Q99497 PARK7 Protein deglycase DJ-1 0 0 ; ; 212.24 1.27E-23 19659100 646.44 413.37 582.62 370.19 453.48 560.55 737.29 661.98 613.65 932.83 FALSE FALSE TRUE 570.6652831 426.1054397 614.1181995 385.2879483 420.0276839 549.8584427 765.7275223 737.3371274 588.3550873 927.2814857 0.615417532 0.459521134 0.662278077 0.415502686 0.452966753 0.592978994 0.825776783 0.79515998 0.634494591 1 9.85686354 -8.967152028 0.79770823 0.999208745 0.596676387 0.062633699 0.17024226 0.391177783 0.459350239 0.09194067 0.029291386 1.08E-09 8.967152028 -0.402532358 GPHCLNGGQCMDR ddPTM_HeLa_CUDC101_4h_R1 2 GPHCLNGGQCMDR 13 0 Q04721 Q04721 NOTCH2 Neurogenic locus notch homolog protein 2;Notch 2 extracellular truncation;Notch 2 intracellular domain 0 0 ; ; 95.618 0.00073983 0 2113.52 2071.11 1926.51 2405.1 2736.7 2245 2109.43 2071.63 2200.6 959.77 FALSE FALSE TRUE 1865.776389 2134.918444 2030.662958 2503.190374 2534.819093 2202.180365 2190.791422 2307.455985 2109.890337 954.0612454 1.955614903 2.237716346 2.128440881 2.623720842 2.656872508 2.308216979 2.296279649 2.418561698 2.211483117 1 9.897938072 -8.398599263 0.454461364 0.90018433 2.479401372 0.209698845 0.393648531 0.210161751 0.092368953 0.144704289 0.057581805 3.99E-09 8.398599263 1.579217042 FKVQGEAVSNIQENT(ph)QTPTVQEESEEEEVDETGVEVK ddPTM_HeLa_CUDC101_4h_R1 1 FKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 37 1 E9PAV3;F8VZJ2;F8W0W4;H0YHX9;Q13765;E9PAV3-2 E9PAV3 NACA "Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha" 1 0 FKVQGEAVSNIQENT(0.249)QT(0.249)PT(0.249)VQEES(0.249)EEEEVDET(0.005)GVEVK 62.183 0.00012417 3175100 1031.9 700.89 772.93 649.86 915.85 958.7 769.26 778.74 1021.6 992.39 TRUE FALSE FALSE 910.9422463 722.4835901 814.7169338 676.3640997 848.2895701 940.4143948 798.9306159 867.3886138 979.4892156 986.4872201 0.92342022 0.732380081 0.825876826 0.685628851 0.859909336 0.953296075 0.809874269 0.879269996 0.992906138 1 9.946156551 -7.516125749 3.478244963 0.969104265 0.821852643 0.48814018 0.071665683 0.154488673 3.862694825 0.013520916 0.014718946 3.05E-08 7.516125749 -0.147251621 YISENES(ph)PRPSQK ddPTM_HeLa_CUDC101_4h_R1 2 YISENESPRPSQK 13 1 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 YISENES(0.995)PRPS(0.005)QK;YIS(0.012)ENES(0.988)PRPSQK ; 174.47 1.46E-06 25069000 7397.2 6517.4 6217.8 5730.8 6219.4 4873.2 4138.5 1969.75 6471 7463.9 TRUE FALSE FALSE 6530.111429 6718.193369 6553.953076 5964.526795 5760.607253 4780.251829 4298.123331 2193.978378 6204.262641 7419.504391 0.880127713 0.905477376 0.883341087 0.803898277 0.776414023 0.644281825 0.579300598 0.295704169 0.836209848 1 12.85710711 -4.366385651 0.500134264 0.95037093 6.82E-22 0.923655121 0.053721624 0.595087777 0.106442076 0.010146042 0.324214801 4.30E-05 4.366385651 -0.95037093 down GPHHLDNSSPGPGSEAR ddPTM_HeLa_CUDC101_4h_R1 2 GPHHLDNSSPGPGSEAR 17 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 0 0 ; ; 94.532 0.0037555 2296010 975.34 481.69 586.84 580.86 949.91 860.79 907.44 1046.58 475.95 957.7 FALSE FALSE TRUE 861.0121237 496.530298 618.5663455 604.5499815 879.8370318 844.3718649 942.4402648 1165.718437 456.3311395 952.0035578 0.90442112 0.52156349 0.649752136 0.63502912 0.924195109 0.886941922 0.989954562 1.22448958 0.479337641 1 9.894823155 -4.266149822 1.767389386 0.871523638 1.342444683 0.22087321 0.200438758 1.018009713 3.136617353 0.027299651 0.798614917 5.42E-05 4.266149822 0.470921045 KVTSPSSSSSSSS(ph)SDS(ph)ESDDEADVSEVTPR ddPTM_HeLa_CUDC101_4h_R1 1 KVTSPSSSSSSSSSDSESDDEADVSEVTPR 30 1 P56181-2 P56181-2 2 0 KVT(0.004)S(0.003)PS(0.003)S(0.003)S(0.013)S(0.038)S(0.057)S(0.057)S(0.154)S(0.345)S(0.345)DS(0.488)ES(0.488)DDEADVS(0.002)EVTPR 51.66 0.008786 9562300 1058.7 1025.9 1010.2 952.68 1096.5 1276.2 1003.2 946.36 1425.7 836.42 TRUE FALSE FALSE 934.6007909 1057.506763 1064.814468 991.5344082 1015.61338 1251.858611 1041.89376 1054.089797 1366.932043 831.4449366 1.124068173 1.271890316 1.280679478 1.192543685 1.221504077 1.505642233 1.253112159 1.267780644 1.64404398 1 9.699476912 -7.515540985 0.508362579 1.003938445 1.321829455 0 0.215124489 0.336722457 0.212204975 0.03551809 0.033691311 3.05E-08 7.515540985 0.31789101 ALLETAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 ALLETASPR 9 0 Q96BT3;H3BMP6;H3BQS6;H3BN05;H3BTS2;H3BQJ0;I3L4F8;H3BUW2;H3BTR4;Q96BT3-3;Q96BT3-2 Q96BT3 CENPT Centromere protein T 1 0 ALLETAS(1)PR 164.66 3.15E-05 39085000 3878.8 3444.2 2516.4 2837.2 3452.4 3006.8 3068.6 2563.1 4088.6 3837.9 TRUE FALSE FALSE 3424.132944 3550.31172 2652.444196 2952.913279 3197.72333 2949.4503 3186.95693 2854.872944 3920.066177 3815.072 0.897527738 0.930601498 0.695254033 0.774012464 0.838181646 0.773104754 0.835359576 0.748314303 1.02752089 1 11.89749457 -7.515462932 0.699765447 0.980410614 0.782443522 0.704462997 0.05677179 0.254835433 0.271012662 0.016597527 0.016572683 3.05E-08 7.515462932 -0.197967092 DILT(ph)S(ph)NMY(ph)QVRQRTLSY(ph)NK ddPTM_HeLa_CUDC101_4h_R1 1 DILTSNMYQVRQRTLSYNK 19 2 Q6AI14 Q6AI14 SLC9A4 Sodium/hydrogen exchanger 4 4 0 DILT(0.997)S(0.997)NMY(0.997)QVRQRT(0.102)LS(0.2)Y(0.707)NK 44.341 0.0031941 0 1907.6 1403.7 1456.3 1380.1 1513.9 1755.6 1392.5 1427.5 1957.9 1810 TRUE FALSE FALSE 1683.99402 1446.946333 1535.031983 1436.386443 1402.222613 1722.114855 1446.209191 1590.00083 1877.194533 1799.23404 0.935950512 0.804201289 0.853158594 0.798332186 0.7793442 0.957137769 0.803791591 0.883709843 1.043329824 1 10.81316715 -7.514509309 2.151657485 0.976557766 0.839535253 0.615900395 0.055049822 0.146968714 1.356843885 0.0095755 0.010351391 3.06E-08 7.514509309 -0.137022513 GPLPVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GPLPVKR 7 1 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 1 ; GPLPVK(1)R;GPLPVK(1)R 92.692 0.028491 185756000 6276 5604.2 4057.4 6341.4 5604.3 5947.3 5555.7 5095.9 3581.4 1699.68 FALSE TRUE FALSE 5540.336794 5776.858759 4276.755317 6600.029702 5190.881954 5833.865161 5769.98521 5675.996658 3433.773176 1689.570228 3.279139691 3.419129116 2.531268157 3.906336412 3.072309081 3.452869295 3.415060893 3.359432218 2.032335277 1 10.7224406 -9.258724408 0.548385813 0.563090292 3.373928331 0.693109518 0.453943126 0.313151642 0.132091632 0.460634816 0.075346399 5.51E-10 9.258724408 2.810838039 ENIKPNETSPS(ph)FSK ddPTM_HeLa_CUDC101_4h_R1 1 ENIKPNETSPSFSK 14 1 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHH4;A0A5F9ZHX3;F8W0B5;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 ENIKPNET(0.197)S(0.109)PS(0.661)FS(0.033)K 107.62 0.0023311 47717000 5009.4 4046.1 3964.2 3842.6 3386.3 3969.2 3014.7 3140.2 3941.8 5448.6 TRUE FALSE FALSE 4422.205726 4170.755545 4178.516643 3999.317837 3136.499395 3893.494123 3130.977989 3497.667675 3779.317336 5416.191485 0.816478837 0.770053193 0.771486136 0.738400378 0.579096844 0.718861978 0.578077418 0.645779915 0.697781337 1 12.40306303 -7.51239129 0.210696646 1.104177694 0.516943268 0.216350819 0.103937919 0.501180477 0.098307695 0.1176658 0.106583182 3.07E-08 7.51239129 -0.587234426 TNTNVNCPIECFMPLDVQADREDS(ph)RE ddPTM_HeLa_CUDC101_4h_R1 1 TNTNVNCPIECFMPLDVQADREDSRE 26 2 H0Y7Z1;P02751-12;P02751-10;P02751-6;P02751-5;P02751-9;P02751-14;P02751-13;P02751-8;P02751-17;P02751-3;P02751-11;P02751-1;P02751-7;P02751 H0Y7Z1 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 1 0 TNTNVNCPIECFMPLDVQADREDS(1)RE 46.656 0.039888 11832000 424.92 631.36 358.6 667.54 756.88 576.78 426.44 554.27 559.15 261.4 TRUE FALSE FALSE 375.1115217 650.8114533 377.9870007 694.7651666 701.0464703 565.7788825 442.8879336 617.3658564 536.1016003 259.8451812 1.443596222 2.504612363 1.454662345 2.67376583 2.697939085 2.177369155 1.704430044 2.375898809 2.063157754 1 8.021508494 -7.5122059 1.011921126 1.108251451 2.252969304 0.197931473 0.49588855 0.224632001 0.4673324 0.090948969 0.09509994 3.07E-08 7.5122059 1.144717853 PMNIIS(ph)LIDEES(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 PMNIISLIDEESK 13 0 A0A087WT71;Q13402-3;Q13402-4;Q13402-5;Q13402-8;Q13402-2;Q13402-7;Q13402-6;Q13402 A0A087WT71 MYO7A Unconventional myosin-VIIa 2 0 PMNIIS(1)LIDEES(1)K 103.26 0.002078 0 214.74 74.178 219.33 163.03 0 69.577 0 0 199.34 343.85 TRUE FALSE FALSE 189.5685027 76.46333626 231.1876432 169.6790681 0 68.24993465 0 0 191.1231208 341.8047649 0.554610474 0.223704711 0.676373377 0.496421014 0 0.1996752 0 0 0.559158738 1 8.417028699 -7.511802049 0.300198919 1.083494955 1.32E-21 0.585306525 0.207444539 0.49482627 0.149168949 0.199367226 0.180198209 3.08E-08 7.511802049 -1.083494955 IDIS(ph)PSTFR ddPTM_HeLa_CUDC101_4h_R1 4 IDISPSTFR 9 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 IDIS(0.976)PS(0.024)TFR;IDIS(0.87)PS(0.13)TFR;IDIS(0.994)PS(0.006)TFR;IDIS(0.774)PS(0.225)T(0.002)FR ;;; 141.89 0.0016113 6098400000 7435.5 5919.08 5156.05 6324.15 6333.89 6160.32 6040.24 5986.14 6931.1 6937.8 TRUE FALSE FALSE 6563.921961 6101.439839 5434.801659 6582.076172 5866.651554 6042.82216 6273.21408 6667.577981 6645.397124 6896.533657 0.951771178 0.884711094 0.788048305 0.954403545 0.850666704 0.876211509 0.909618425 0.96680134 0.963585107 1 12.7516557 -7.511532844 2.182429468 0.982050063 0.887666325 0.373118595 0.04872907 0.203367595 1.929281564 0.009169743 0.00992671 3.08E-08 7.511532844 -0.094383738 Y(ph)S(ph)VQT(ph)S(ph)LIVATLKK ddPTM_HeLa_CUDC101_4h_R1 1 YSVQTSLIVATLKK 14 1 P21817-3;P21817-2;P21817;M0R127 P21817-3 RYR1 Ryanodine receptor 1 4 0 Y(0.997)S(0.997)VQT(0.997)S(0.997)LIVAT(0.011)LKK 43.628 0.0033275 0 993.73 777.59 695.58 712.88 784.15 690.58 669.96 906.06 991.83 974.13 TRUE FALSE FALSE 877.2464758 801.5466262 733.1851588 741.9543277 726.3048167 677.4083371 695.8005816 1009.202208 950.9463476 968.3358314 0.905932061 0.827756859 0.757160001 0.766215918 0.750054674 0.699559301 0.718552964 1.04220269 0.982041887 1 9.919363669 -7.511523726 1.031025484 0.974595144 0.777247767 0.425082027 0.091549792 0.292997819 0.631545343 0.020560677 0.021541405 3.08E-08 7.511523726 -0.197347377 Y(ph)RY(ph)LGHRFQGKS(ph)MVSEPK ddPTM_HeLa_CUDC101_4h_R1 1 YRYLGHRFQGKSMVSEPK 18 3 A0A087WWJ6;Q04743-2 A0A087WWJ6 EMX2 3 0 Y(0.999)RY(0.999)LGHRFQGKS(0.501)MVS(0.501)EPK 43.297 0.040257 9767700 1280.6 1678.1 1498.8 1410 1136.8 1385.6 1144 1411.9 1615.7 916.44 TRUE FALSE FALSE 1130.490009 1729.800272 1579.829662 1467.505895 1052.940529 1359.171989 1188.124463 1572.624989 1549.100162 910.9889741 1.24094807 1.898815816 1.734191858 1.610893146 1.155821375 1.491974137 1.304213879 1.72628323 1.700459837 1 9.831289783 -7.510970943 4.303902183 1.100113111 1.543675864 0.002425691 0.280672917 0.135512725 5.580641824 0.039701868 0.043370274 3.08E-08 7.510970943 0.443562753 EQS(ph)TPPKSPQ ddPTM_HeLa_CUDC101_4h_R1 2 EQSTPPKSPQ 10 1 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 1 0 EQS(0.939)T(0.061)PPKSPQ;EQS(0.5)T(0.5)PPKSPQ ; 176.78 6.66E-07 189204000 8117.5 6991.5 8015.4 8202.3 8453.5 7630.6 7391.2 8597.4 6536.2 6367 TRUE FALSE FALSE 7165.978955 7206.899828 8448.736769 8536.825247 7829.902147 7485.059018 7676.28106 9576.093264 6266.775069 6329.128801 1.132222014 1.138687496 1.334897272 1.348815219 1.237121631 1.182636545 1.212849557 1.513019179 0.990148134 1 12.62779121 -7.508706383 0.424690977 0.994498704 1.324008374 0.625909085 0.093108967 0.491241292 0.236755207 0.055268617 0.051431394 3.10E-08 7.508706383 0.32950967 NAGVEGS(ph)LIVEK ddPTM_HeLa_CUDC101_4h_R1 1 NAGVEGSLIVEK 12 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 1 0 NAGVEGS(1)LIVEK 95.631 0.015254 4074800 1378.2 1028.7 1044.1 1084.1 1168.2 1204.8 1136.4 1097.8 1133.2 1285.2 TRUE FALSE FALSE 1216.649485 1060.393028 1100.547204 1128.314284 1082.024213 1181.820447 1180.231329 1222.769115 1086.489016 1277.555573 0.952326075 0.830017144 0.861447617 0.883182155 0.846948842 0.925063827 0.923819952 0.957116184 0.850443643 1 10.31917033 -7.508020139 3.821356671 0.98046454 0.889148453 0 0.055510811 0.130344653 3.992227449 0.007344544 0.008028694 3.10E-08 7.508020139 -0.091316087 GPPQEEEEEEDEEEEATKEDAEAPGIR ddPTM_HeLa_CUDC101_4h_R1 4 GPPQEEEEEEDEEEEATKEDAEAPGIR 27 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 0 ;;; ;;; 193.39 8.43E-23 272682000 3454.58 3051.34 3205.16 2823.24 2974.22 3322.93 3051.4 2862.78 3287.13 3538.43 FALSE FALSE TRUE 3049.639369 3145.348169 3378.440645 2938.38393 2754.817716 3259.550647 3169.09352 3188.667303 3151.63311 3517.383261 0.867019356 0.894229584 0.960498301 0.835389183 0.783200894 0.926697606 0.900980441 0.906545311 0.896016407 1 11.78028683 -9.346251031 0.738998635 1.012546405 0.882073154 0.047798046 0.056296207 0.645260337 0.532257635 0.05331374 0.009718852 4.51E-10 9.346251031 -0.130473251 TSNS(ph)LTEDSK ddPTM_HeLa_CUDC101_4h_R1 2 TSNSLTEDSK 10 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 TSNS(0.921)LT(0.079)EDSK;T(0.007)S(0.001)NS(0.569)LT(0.42)EDS(0.003)K ; 152 0.00035388 193075000 7361.1 4293.9 5945.2 6223.9 5103.5 4493.1 5622 3672.5 7179.7 7654.1 TRUE FALSE FALSE 6498.243017 4426.189969 6266.615495 6477.737544 4727.024973 4407.401604 5838.842423 4090.562555 6883.749727 7608.573073 0.854068556 0.581737197 0.823625591 0.851373507 0.621276148 0.579267829 0.767403082 0.537625454 0.904735968 1 12.8934102 -7.507561114 0.214567678 1.108468578 0.531657656 0.530736345 0.104422146 1.157594208 0.232134282 0.265891694 0.241621698 3.11E-08 7.507561114 -0.576810922 T(ph)SLPQDNT(ph)RK ddPTM_HeLa_CUDC101_4h_R1 1 TSLPQDNTRK 10 1 B5MC17;A8MYP8 B5MC17 ODF3B Outer dense fiber protein 3B 2 0 T(0.998)S(0.002)LPQDNT(1)RK 71.558 0.0026867 0 1031.6 616.72 748.39 854.34 1221.8 919.45 736.53 775.19 858.42 973.22 TRUE FALSE FALSE 910.6774118 635.7204122 788.8502272 889.183678 1131.670248 901.9130232 764.9382088 863.4344962 823.0355643 967.4312442 0.941335539 0.65712206 0.815407019 0.919118215 1.169768141 0.932276096 0.790689998 0.892502182 0.850743212 1 9.918015322 -7.506697908 14.62528945 0.974133129 0.884159685 0.00173286 0.128873151 2.459054459 2222.180262 0.023113213 0.024880753 3.11E-08 7.506697908 -0.089973444 SRT(ph)AS(ph)GSSVTS(ph)LDGTR ddPTM_HeLa_CUDC101_4h_R1 1 SRTASGSSVTSLDGTR 16 1 Q92597;E5RJY1;E7ESM1;Q92597-3;Q92597-2 Q92597 NDRG1 Protein NDRG1 3 0 S(0.155)RT(0.743)AS(0.695)GS(0.204)S(0.204)VT(0.269)S(0.71)LDGT(0.021)R 72.932 0.03997 10460000 2289.1 2616.5 1816.2 2037.2 2186.1 2106.8 1967.7 1968.4 2544.4 1923.2 TRUE FALSE FALSE 2020.775168 2697.111264 1914.389266 2120.285822 2024.835758 2066.6163 2043.594848 2192.474699 2439.518755 1911.760721 1.05702306 1.410799602 1.001374934 1.109074895 1.059147066 1.081001549 1.068959533 1.14683531 1.276058624 1 10.90068625 -7.505897963 18.20913666 1.025154351 1.122105007 0 0.130677093 8.398237583 9008.10735 0.017819519 0.019130584 3.12E-08 7.505897963 0.096950657 VTQGAAS(ph)PGHGIQEK ddPTM_HeLa_CUDC101_4h_R1 1 VTQGAASPGHGIQEK 15 0 G5E9C0;Q9HB58-5;Q9HB58-3;Q9HB58-7;Q9HB58;Q9HB58-6;Q9HB58-2;Q9HB58-4 G5E9C0 SP110 Sp110 nuclear body protein 1 0 VTQGAAS(1)PGHGIQEK 107.63 0.0030024 13389000 2609.6 1578.7 2047.4 2289.4 2300.2 2522.5 2158.1 1736.2 2406.8 2480 TRUE FALSE FALSE 2303.706644 1627.337876 2158.088637 2382.771628 2130.518829 2474.387515 2241.33864 1933.84199 2307.590685 2465.24885 0.934472252 0.660110997 0.875403973 0.966544058 0.864220595 1.003706995 0.909173384 0.784440885 0.936047769 1 11.26751757 -7.505524466 12.94149965 0.971124333 0.871594547 0.177522892 0.090739007 0.870668048 646.5144551 0.016245628 0.017547074 3.12E-08 7.505524466 -0.099529786 RS(ph)ASPDDDLGSSNWEAADLGNEER ddPTM_HeLa_CUDC101_4h_R1 1 RSASPDDDLGSSNWEAADLGNEER 24 1 E9PM92;O00193;E9PQA1 E9PM92 C11orf58;SMAP Small acidic protein 1 0 RS(0.686)AS(0.314)PDDDLGSSNWEAADLGNEER 104.84 1.54E-05 0 1604.4 1650.7 1257.1 1437.3 1594.2 1424 1481.2 1271 1635 1365.4 TRUE FALSE FALSE 1416.334664 1701.55611 1325.062629 1495.919307 1476.599042 1396.839573 1538.33038 1415.685502 1567.604608 1357.27854 1.043510689 1.25365285 0.976264333 1.102146142 1.087911581 1.02914732 1.133393283 1.043032407 1.15496161 1 10.40650111 -7.505076618 15.29916241 1.019188217 1.08937946 0 0.081524054 2.353968871 2023.56203 0.0113704 0.012248407 3.13E-08 7.505076618 0.070191242 SKSAT(ph)T(ph)T(ph)PSGSPR ddPTM_HeLa_CUDC101_4h_R1 1 SKSATTTPSGSPR 13 1 Q2M2I8-2;Q2M2I8;A0A096LP60;A0A096LNZ0;A0A096LP25 Q2M2I8-2;A0A096LNZ0 AAK1 AP2-associated protein kinase 1 3 0 S(0.162)KS(0.214)AT(0.795)T(0.732)T(0.737)PS(0.272)GS(0.088)PR 94.409 0.013143 4264900 2396.7 1500.9 1662.1 2001.3 2014.6 1679 1915.5 1301.2 2162.4 2367.1 TRUE FALSE FALSE 2115.762459 1547.14095 1751.958154 2082.921664 1865.986972 1646.975872 1989.381477 1449.323348 2073.264957 2353.020384 0.899168776 0.65751277 0.744557151 0.885211908 0.793017767 0.699941184 0.845458667 0.615941689 0.881107946 1 11.2002981 -7.504250566 3.277634887 0.959551082 0.757503551 0.48392087 0.08285054 0.125214751 2.711897669 0.01444254 0.015782577 3.13E-08 7.504250566 -0.202047531 GLPFYAGLS(ph)PAGK ddPTM_HeLa_CUDC101_4h_R1 1 GLPFYAGLSPAGK 13 0 Q8IWI9;Q8IWI9-3 Q8IWI9 MGA MAX gene-associated protein 1 0 GLPFYAGLS(1)PAGK 76.357 0.038876 16080000 1038.1 904.02 823.31 808.09 913.16 518.2 529.62 654.3 888 1263.3 TRUE FALSE FALSE 916.4154917 931.8717847 867.820629 841.0474031 845.7980061 508.3161984 550.0476208 728.7828672 851.3962641 1255.785835 0.729754601 0.742062666 0.691057826 0.669737928 0.6735209 0.404779369 0.43801069 0.580340092 0.677978872 1 10.29437473 -7.504028561 0.096209864 1.496838142 4.27E-13 0.414963588 0.120822136 2.754460517 0.230884044 1.759737209 1.665604474 3.13E-08 7.504028561 -1.496838142 EKTMSS(ph)DDEDCSAK ddPTM_HeLa_CUDC101_4h_R1 2 EKTMSSDDEDCSAK 14 1 H0YBW3;Q9NVR2 H0YBW3 INTS10 Integrator complex subunit 10 1 0 EKTMS(0.012)S(0.95)DDEDCS(0.038)AK;EKTMS(0.066)S(0.934)DDEDCSAK ; 226.39 8.11E-53 8318700 5426.7 4833 5478.3 5147.4 6842.9 4985.9 5432.9 4344.4 5884.6 4249.4 TRUE FALSE FALSE 4790.590452 4981.899001 5774.473469 5357.333221 6338.1129 4890.802265 5642.448773 4838.948935 5642.034297 4224.12438 1.134102602 1.179392119 1.367022594 1.268270709 1.500456031 1.157826291 1.335767668 1.14555077 1.335669547 1 12.0444366 -7.503626973 0.945519599 1.035037634 1.299034959 0 0.138325473 0.255393957 0.466930932 0.023313119 0.024338141 3.14E-08 7.503626973 0.263997326 KGGEFDEFVNDDT(ph)DDDLPISK ddPTM_HeLa_CUDC101_4h_R1 5 KGGEFDEFVNDDTDDDLPISK 21 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(0.961)DDDLPIS(0.039)K;KGGEFDEFVNDDT(0.997)DDDLPIS(0.003)K ;;;; 134.63 5.07E-06 864564000 33252.9 30083 27358.5 28315.1 32044.5 30262.2 27627.2 27448.9 30581.3 29337 TRUE FALSE FALSE 29355.04547 31009.82157 28837.58326 29469.91217 29680.64108 29684.99896 28692.79036 30573.57182 29320.72587 29162.50222 1.006602426 1.063345708 0.988858331 1.010541275 1.017767298 1.017916732 0.983893294 1.048386438 1.005425586 1 14.83182689 -7.503562324 23.67468792 1.002912805 1.017180433 0.080774178 0.022527729 155.7985757 190955.5706 0.003687208 0.003951982 3.14E-08 7.503562324 0.014267629 AHSPAEGASVESS(ph)SPGPK ddPTM_HeLa_CUDC101_4h_R1 1 AHSPAEGASVESSSPGPK 18 0 C9J4C4;Q8NFG4-3;Q8NFG4-2;Q8NFG4 C9J4C4 FLCN Folliculin 1 0 AHSPAEGASVES(0.099)S(0.525)S(0.376)PGPK 108.47 0.00013383 0 3211.7 2073.1 2514.3 2853.7 3267 3165 2715.7 1967.6 3012.1 2919.6 TRUE FALSE FALSE 2835.229395 2136.969754 2650.230663 2970.086221 3025.999919 3104.632898 2820.445459 2191.583631 2887.939963 2902.234089 0.976912719 0.73631888 0.913169159 1.023379276 1.04264502 1.069738968 0.971818734 0.755136754 0.995074785 1 11.50294817 -7.503210441 24.22791379 0.98981453 0.93823585 0.06195723 0.105653704 298.1439416 367269.0114 0.019346276 0.020736042 3.14E-08 7.503210441 -0.05157868 LS(ph)PIPEEVPK ddPTM_HeLa_CUDC101_4h_R1 3 LSPIPEEVPK 10 0 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 LS(1)PIPEEVPK;LS(1)PIPEEVPK;LS(1)PIPEEVPK ;; 161.93 5.11E-05 573108900 13188 10435.1 8845.1 9106.9 9933.9 10563.4 9521.7 8011.5 10630.8 13296.1 TRUE FALSE FALSE 11642.12263 10756.59306 9323.292861 9478.318745 9201.095988 10361.92074 9888.955159 8923.496776 10192.59392 13217.01421 0.880843619 0.813844405 0.705400835 0.717130102 0.696155413 0.783983476 0.748198875 0.675152242 0.7711722 1 13.69010868 -7.502241249 0.751352472 0.976609906 0.71704032 0.386026172 0.073652602 0.129963097 0.156288011 0.011119722 0.011317165 3.15E-08 7.502241249 -0.259569586 LSVGSVTSRPST(ph)PTLGTPTPQTMSVSTK ddPTM_HeLa_CUDC101_4h_R1 2 LSVGSVTSRPSTPTLGTPTPQTMSVSTK 28 1 Q16594;D6RIE8 Q16594 TAF9 Transcription initiation factor TFIID subunit 9 1 0 LSVGS(0.005)VT(0.013)S(0.107)RPS(0.153)T(0.544)PT(0.045)LGT(0.113)PT(0.018)PQTMSVSTK;LSVGS(0.003)VT(0.023)S(0.02)RPS(0.253)T(0.677)PT(0.023)LGT(0.002)PT(0.001)PQTMSVSTK ; 72.633 8.62E-05 67877000 4649.2 3764.9 3653.7 3288 4019.3 3567.2 3809.6 3233.7 4582.9 4477.5 TRUE FALSE FALSE 4104.227824 3880.892106 3851.230074 3422.098852 3722.804247 3499.161603 3956.537548 3601.811337 4393.990922 4450.867631 0.922118599 0.871940581 0.865276255 0.768861071 0.836422144 0.786175167 0.888936243 0.809238026 0.987221209 1 12.11987088 -7.502091516 0.700982749 0.985868186 0.819114172 0.799580815 0.033407407 0.182945073 0.194860081 0.009976425 0.010057958 3.15E-08 7.502091516 -0.166754014 T(ph)EESPAS(ph)DEAGEK ddPTM_HeLa_CUDC101_4h_R1 1 TEESPASDEAGEK 13 0 P05114;A6NEL0;A6NL93 P05114 HMGN1 Non-histone chromosomal protein HMG-14 2 0 T(0.899)EES(0.101)PAS(1)DEAGEK 126.07 0.0058214 11773000 4630.9 3413.3 3415.9 3556.6 2658.1 3538.1 3252.4 2219.9 4375.7 5002.9 TRUE FALSE FALSE 4088.072922 3518.459727 3600.573887 3701.653521 2462.017259 3470.616637 3377.846157 2472.604443 4195.331794 4973.142528 0.822030115 0.707492236 0.724003759 0.744328862 0.495062678 0.697871943 0.679217645 0.49719155 0.843597739 1 12.27994206 -7.501765182 0.290925896 1.053012828 0.539583988 0.649693861 0.085202595 0.45279356 0.131284029 0.086772844 0.079089837 3.15E-08 7.501765182 -0.513428839 (ac)MDSAGQDINLNS(ph)PNKGLLSDSMTDVPVDTGVAAR ddPTM_HeLa_CUDC101_4h_R1 2 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAAR 34 1 O43399-2;O43399-4;O43399;O43399-3;O43399-5;O43399-7;A0A087WYR3;A0A087WZ51 O43399-2 TPD52L2 Tumor protein D54 1 0 MDS(0.111)AGQDINLNS(0.858)PNKGLLS(0.012)DS(0.018)MT(0.002)DVPVDTGVAAR;MDS(0.176)AGQDINLNS(0.806)PNKGLLS(0.009)DS(0.005)MT(0.004)DVPVDTGVAAR ; 60.031 1.21E-18 49212000 549.11 388.65 252.563 372.04 489.55 545.42 353.67 434.02 539.22 542.96 TRUE FALSE FALSE 484.7441582 400.6238458 266.2173197 387.2133993 453.4368718 535.0170222 367.3111704 483.4270824 516.9931234 539.7304498 0.89812268 0.742266526 0.493241246 0.717419963 0.84011727 0.991267071 0.680545577 0.895682433 0.957872811 1 9.076095271 -7.501728306 2.549213007 0.960609897 0.762721892 0.316735652 0.126912724 0.247516314 3.191408767 0.024926166 0.027156796 3.15E-08 7.501728306 -0.197888004 DSSS(ph)TDSANEKPALIPR ddPTM_HeLa_CUDC101_4h_R1 1 DSSSTDSANEKPALIPR 17 1 B8ZZZ7;Q9NUQ6-2;Q9NUQ6;Q9NUQ6-4;Q9NUQ6-3;F2Z2S1;C9JKE4;F8VZ02;F8VT91;C9JGM8;C9JW67;F8W6C2 B8ZZZ7 SPATS2L SPATS2-like protein 1 0 DS(0.154)S(0.154)S(0.473)T(0.154)DS(0.063)ANEKPALIPR 54.171 0.038498 21741000 1438 1316.2 1133.3 1497.7 1712.3 1317.8 1214.8 1036.8 1498.7 1208.8 TRUE FALSE FALSE 1269.43982 1356.750562 1194.569626 1558.78268 1585.98704 1292.665161 1261.655243 1154.825121 1436.922952 1201.610004 1.056449111 1.129110575 0.99414088 1.297245092 1.319885017 1.075777629 1.049970655 0.961064836 1.195831382 1 10.23075301 -7.501488253 1.024634402 1.015710238 1.129077056 0 0.123519009 0.668342115 1.42133629 0.026781253 0.028190599 3.15E-08 7.501488253 0.113366818 QHEVEIPSPT(ph)QK ddPTM_HeLa_CUDC101_4h_R1 1 QHEVEIPSPTQK 12 0 Q08499-6;Q08499;Q08499-10;A0A087WSZ7;Q08499-11;Q08499-9;A0A1B0GW84;Q08499-2;Q08499-3;Q08499-4;Q08499-8;Q08499-5;D6RHE0 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 QHEVEIPS(0.36)PT(0.64)QK 136.17 0.0066085 37023000 5033.4 4054.9 3849.9 4099.2 3179 3281.8 2710.6 1474.5 4926.3 4822.3 TRUE FALSE FALSE 4443.392482 4179.826663 4058.037239 4266.383094 2944.491503 3219.205133 2815.14875 1642.35112 4723.235829 4793.616745 0.926939453 0.871956789 0.846550205 0.890013391 0.61425259 0.671560808 0.587270301 0.342612104 0.985317784 1 12.22689885 -4.362738738 0.38042578 0.985940426 1.49E-17 0.919023391 0.057226013 0.948680636 0.099287984 0.016201399 0.420804096 4.34E-05 4.362738738 -0.985940426 down GPSFPEPLREEQDLER ddPTM_HeLa_CUDC101_4h_R1 1 GPSFPEPLREEQDLER 16 1 H0Y5R6;Q5T446;A0A1B0GVN9;A0A1B0GVZ4;A0A494C085;P06132;A0A494C1D8;A0A494C0S8;A0A494BZY8;A0A494C0Q8 H0Y5R6 UROD Uroporphyrinogen decarboxylase 0 0 79.885 0.020235 11462000 2468.2 2502.4 2205.4 2247.2 2500.7 2461.6 1868.7 2089.3 2114.7 2660.5 FALSE FALSE TRUE 2178.881338 2579.495978 2324.630595 2338.850529 2316.228343 2414.649081 1940.776385 2327.137467 2027.531171 2644.675228 0.823874824 0.975354535 0.87898528 0.884362097 0.875808235 0.913022913 0.733842993 0.879933174 0.766646562 1 11.36887485 -9.459664779 0.997638105 1.006341792 0.867191542 0 0.092964173 0.480670326 0.789716008 0.051103488 0.010510034 3.47E-10 9.459664779 -0.13915025 (ac)AESSESFTMASS(ph)PAQRR ddPTM_HeLa_CUDC101_4h_R1 1 AESSESFTMASSPAQRR 17 1 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 1 0 AESSESFT(0.003)MAS(0.051)S(0.945)PAQRR 112.57 1.69E-11 28621000 331.63 132.89 253.55 251.23 234.38 396.2 200.3 233.45 323.42 324.4 TRUE FALSE FALSE 292.7568341 136.9841834 267.2576799 261.4762453 217.0902544 388.6431451 208.0256381 260.0250044 310.0884907 322.4704544 0.907856302 0.424796075 0.828781913 0.810853341 0.673209751 1.205205438 0.645099839 0.806352957 0.961602796 1 8.333023173 -7.500144679 18.1834264 0.95935266 0.774239755 0.180143607 0.184859519 12.41896927 9934.925765 0.031270888 0.033770939 3.16E-08 7.500144679 -0.185112905 GPSLDIDTPDVNIEGPEGK ddPTM_HeLa_CUDC101_4h_R1 2 GPSLDIDTPDVNIEGPEGK 19 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 247.17 1.25E-55 19143700 5814.4 5210.8 4611 4778.1 4791.1 5688.5 4728.5 4220.7 5233.2 5581 FALSE FALSE TRUE 5132.844846 5371.338572 4860.284608 4972.971571 4437.670098 5580.00134 4910.879829 4701.167427 5017.485281 5547.803964 0.925202996 0.968191848 0.876073603 0.896385597 0.799896703 1.005803625 0.885193468 0.847392492 0.904409261 1 12.43770109 -8.606194392 0.290888663 1.030940675 0.877194858 0.071206406 0.060118999 2.178228614 0.368188234 0.122793416 0.039922463 2.48E-09 8.606194392 -0.153745818 RAS(ph)GQAFELILSPR ddPTM_HeLa_CUDC101_4h_R1 3 RASGQAFELILSPR 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR;RAS(1)GQAFELILSPR ;; 175.8 1.25E-07 654885900 2334.93 2562.95 1976.06 2205.92 2618.58 2473.46 1911.48 1392.13 1831.86 1983.42 TRUE FALSE FALSE 2061.233045 2641.911452 2082.891781 2295.886952 2425.41257 2426.282872 1985.206424 1550.604452 1756.349955 1971.62253 1.045450138 1.339968179 1.056435372 1.164465773 1.23016071 1.230602123 1.006889703 0.786461114 0.890814509 1 10.94516766 -7.499855808 21.68328117 1.020051045 1.125675689 0.136119412 0.148468045 84.07915059 79190.56741 0.025146377 0.027076362 3.16E-08 7.499855808 0.105624644 VDS(ph)EGDFS(ph)ENDDAAGDFR ddPTM_HeLa_CUDC101_4h_R1 2 VDSEGDFSENDDAAGDFR 18 0 M0QYL4;O43823 M0QYL4 AKAP8 A-kinase anchor protein 8 2 0 VDS(1)EGDFS(1)ENDDAAGDFR;VDS(1)EGDFS(1)ENDDAAGDFR ; 186.98 2.65E-10 48837000 2243.08 1521.1 1616.05 2054.48 1779.62 1991.56 1806.31 1953.5 2208.25 2055.93 TRUE FALSE FALSE 1980.149563 1567.963288 1703.418551 2138.270575 1648.340978 1953.574311 1875.979982 2175.878544 2117.225 2043.701237 0.968903638 0.767217468 0.833496854 1.046273563 0.80654694 0.955900146 0.917932596 1.064675455 1.035975788 1 10.99696859 -7.498905841 22.19352103 0.986281245 0.909728593 0.159163887 0.09180255 96.10449652 88974.39913 0.015342348 0.016534346 3.17E-08 7.498905841 -0.076552653 FSGEEGEIEDDES(ph)GTENREEK ddPTM_HeLa_CUDC101_4h_R1 3 FSGEEGEIEDDESGTENREEK 21 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 FSGEEGEIEDDES(0.947)GT(0.053)ENREEK;FSGEEGEIEDDES(0.98)GT(0.02)ENREEK;FSGEEGEIEDDES(0.936)GT(0.064)ENREEK ;; 77.689 0.0013346 89503000 7854.1 5728.13 5707.95 5008.97 4817.64 5533.1 5111.66 3908.21 6256.9 8598 TRUE FALSE FALSE 6933.454304 5904.606896 6016.539043 5213.257447 4462.252295 5427.565336 5308.818438 4353.104829 5998.987934 8546.858714 0.811228375 0.690851118 0.703947409 0.609961814 0.522092671 0.635036277 0.621142646 0.509322194 0.701893893 1 13.06117856 -7.498324925 0.429525566 1.003935035 0.545572503 0.477346225 0.098396742 0.163229818 0.079937622 0.025352705 0.02385437 3.17E-08 7.498324925 -0.458362531 AIPVSPS(ph)AVEEDEDEDGHTVVATAR ddPTM_HeLa_CUDC101_4h_R1 1 AIPVSPSAVEEDEDEDGHTVVATAR 25 0 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2;H0Y3R8 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 AIPVS(0.126)PS(0.874)AVEEDEDEDGHTVVATAR 228.35 1.64E-39 91960000 2718.5 3259.4 2447.5 2344.3 2972.7 2747 2293.4 1849.5 2823.3 2317.3 TRUE FALSE FALSE 2399.841551 3359.818251 2579.819253 2439.910687 2753.409843 2694.605552 2381.857206 2060.039604 2706.922379 2303.516597 1.041816479 1.45856047 1.119948194 1.059211247 1.195307144 1.169779092 1.034009136 0.894302045 1.175126059 1 11.16962228 -7.498131369 24.87875383 1.018448328 1.138285117 0 0.144463862 343.0631839 344888.7786 0.023919653 0.025752743 3.18E-08 7.498131369 0.119836789 AVDS(ph)SSEEIEVEVPVVDRR ddPTM_HeLa_CUDC101_4h_R1 2 AVDSSSEEIEVEVPVVDRR 19 1 D6RB01;Q9Y6X4 D6RB01 FAM169A Soluble lamin-associated protein of 75 kDa 1 0 AVDS(0.977)S(0.02)S(0.003)EEIEVEVPVVDRR;AVDS(0.885)S(0.107)S(0.009)EEIEVEVPVVDRR ; 218.05 5.18E-26 22651000 2423.9 2298.3 1775.73 2286.9 2703.7 2110.53 1849.3 1976.04 2483.4 2132.75 TRUE FALSE FALSE 2139.774116 2369.107899 1871.731335 2380.169667 2504.253438 2070.275157 1920.62812 2200.984406 2381.033201 2120.064308 1.009296797 1.117469829 0.882865358 1.122687485 1.18121579 0.976515264 0.90592918 1.0381687 1.1230948 1 11.04989231 -7.497054212 24.10973982 1.004101485 1.03109051 0 0.096555598 767.9274193 716946.4674 0.015635135 0.016876292 3.18E-08 7.497054212 0.026989025 RSYS(ph)SPDITQAIQEEEKR ddPTM_HeLa_CUDC101_4h_R1 2 RSYSSPDITQAIQEEEKR 18 2 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 RS(0.078)Y(0.008)S(0.889)S(0.025)PDITQAIQEEEKR;RS(0.273)Y(0.214)S(0.446)S(0.067)PDITQAIQEEEKR ; 102.16 0.001383 55586000 2151.9 1611.17 1605.77 1898.61 2050.7 1788.19 1543.11 1773.22 2248 1995.89 TRUE FALSE FALSE 1899.657544 1660.808238 1692.582783 1976.043522 1899.423947 1754.083255 1602.62827 1975.076197 2155.336489 1984.018358 0.957479822 0.837093181 0.853108429 0.995980463 0.957362083 0.884106363 0.807768871 0.995492904 1.086349065 1 10.95420966 -7.496935578 4.940328794 0.98201519 0.902917325 0.32296957 0.06909895 0.199409592 11.45376361 0.010819908 0.011913501 3.18E-08 7.496935578 -0.079097865 SES(ph)PPAELPSLRR ddPTM_HeLa_CUDC101_4h_R1 2 SESPPAELPSLRR 13 1 Q14669;Q14669-2;Q14669-3;G5E9G6;H7C1L9 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 S(0.072)ES(0.928)PPAELPSLRR;S(0.307)ES(0.693)PPAELPSLRR ; 108.36 0.0027137 49763000 5896.6 6230.3 5537.2 5522.2 6742 5720.7 5615.7 5968.8 6274.8 4702.1 TRUE FALSE FALSE 5205.409487 6422.248158 5836.557781 5747.419185 6244.656092 5611.587179 5832.29943 6648.264065 6016.150088 4674.1317 1.113663418 1.373998118 1.248693481 1.229622859 1.336003453 1.200562487 1.247782434 1.422352747 1.287116084 1 12.19048267 -7.496874039 2.752540449 1.044258981 1.285997387 0.225273839 0.103266084 0.103183862 1.547329684 0.013090011 0.014304123 3.19E-08 7.496874039 0.241738405 EGGTASVATGPDS(ph)PSPVPLPPGKPALPGADGTPFGCPPGRK ddPTM_HeLa_CUDC101_4h_R1 2 EGGTASVATGPDSPSPVPLPPGKPALPGADGTPFGCPPGRK 41 2 Q6SPF0;F8WDT5;E9PIW9 Q6SPF0 SAMD1 Atherin 1 0 EGGTASVAT(0.052)GPDS(0.474)PS(0.474)PVPLPPGKPALPGADGTPFGCPPGRK;EGGT(0.001)AS(0.002)VAT(0.027)GPDS(0.485)PS(0.485)PVPLPPGKPALPGADGT(0.001)PFGCPPGRK ; 62.853 4.07E-05 60988000 3394.3 2993.7 3402.1 3664.6 3568.7 3454.9 3789.4 3393.3 3492 2424.49 TRUE FALSE FALSE 2996.425299 3085.932349 3586.027817 3814.058228 3305.444111 3389.003539 3935.558427 3779.579556 3348.058282 2410.069026 1.24329439 1.280433181 1.487935731 1.582551449 1.371514291 1.40618526 1.632965025 1.568245355 1.389196013 1 11.23485875 -7.496811278 0.345045998 0.962320896 1.597442466 0.362665853 0.143547626 0.330829029 0.119642006 0.074992616 0.069200322 3.19E-08 7.496811278 0.63512157 YSLADQTSGDQS(ph)PLPPCTPTPPCAEMR ddPTM_HeLa_CUDC101_4h_R1 1 YSLADQTSGDQSPLPPCTPTPPCAEMR 27 0 Q06124;Q06124-1 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 1 0 Y(0.001)S(0.001)LADQT(0.024)S(0.089)GDQS(0.886)PLPPCTPTPPCAEMR 76.004 7.16E-05 4935500 573.4 740.31 488.85 405.47 666.39 467.52 548.45 461.87 644.84 491.91 TRUE FALSE FALSE 506.1869212 763.1180736 515.2787097 422.0068192 617.2317373 458.6028349 569.6039002 514.4474139 618.2594223 488.9840974 1.035180743 1.56061941 1.053773962 0.863027696 1.262273642 0.937868608 1.164872034 1.052073915 1.264375315 1 8.933643737 -7.496053643 24.982351 1.015520788 1.127183682 0 0.196559089 587.7357366 547367.1797 0.030733429 0.033208588 3.19E-08 7.496053643 0.111662893 RLQAS(ph)LGGGSSSQGT(ph)T(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 RLQASLGGGSSSQGTTK 17 1 P59044 P59044 NLRP6 "NACHT, LRR and PYD domains-containing protein 6" 3 0 RLQAS(0.996)LGGGS(0.06)S(0.06)S(0.056)QGT(0.915)T(0.915)K 60.49 0.0027912 0 197.03 0 145.97 71.454 111.18 202.7 119.44 127.55 130.59 203.85 TRUE FALSE FALSE 173.9344421 0 153.8615797 74.36820297 102.9784729 198.8338352 124.0468408 142.0697764 125.2070249 202.6374911 0.858352722 0 0.759294733 0.367001203 0.508190623 0.981229259 0.612161353 0.701103116 0.61788677 1 7.66275731 -7.496047557 21.08896304 0.937510375 0.566898994 0.141021293 0.264497559 40.42820496 31777.58224 0.041667049 0.045185483 3.19E-08 7.496047557 -0.370611381 GPSSVEDIK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 2 GPSSVEDIKAK 11 1 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 0 1 ; GPSSVEDIK(1)AK;GPSSVEDIK(1)AK 157.38 0.00013269 4213200 2488.4 2458.2 1611.01 2072.65 2349.3 2329.6 2760.4 3180.9 2419.8 2029.6 FALSE TRUE FALSE 2196.713524 2533.934228 1698.106074 2157.181626 2175.996819 2285.166761 2866.869553 3543.000798 2320.05482 2017.527849 1.088814474 1.255959976 0.841676646 1.069220247 1.078546113 1.132656862 1.420981403 1.756109984 1.149949341 1 10.97837287 -4.4289258 1.45421355 1.046456884 1.91819109 0.823226275 0.100961708 0.227409624 0.544066739 0.013630392 0.260294767 3.72E-05 4.4289258 0.871734207 NQATSATSEKDNDDDQS(ph)DKGTYTIELENPNSEEVEAR ddPTM_HeLa_CUDC101_4h_R1 1 NQATSATSEKDNDDDQSDKGTYTIELENPNSEEVEAR 37 2 H0Y2V6;Q5SW79;H0YB66 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 NQATSATSEKDNDDDQS(0.318)DKGT(0.318)Y(0.293)T(0.07)IELENPNS(0.001)EEVEAR 69.885 4.44E-07 105840000 2164.8 1645.9 1843.4 1598.4 2213.3 1741 1931.3 1584.7 2062.3 1967.7 TRUE FALSE FALSE 1911.045426 1696.608228 1943.05978 1663.589661 2050.029269 1707.793326 2005.790888 1765.095842 1977.291121 1955.996033 0.97701907 0.867388379 0.99338636 0.850507687 1.048074349 0.873106743 1.025457544 0.902402568 1.010887081 1 10.93368773 -7.495749081 16.9692186 0.989863092 0.939853966 0.148747444 0.064453025 11.13489116 6966.174733 0.009794026 0.010678566 3.19E-08 7.495749081 -0.050009126 SGIETFS(ph)PPPPPPK ddPTM_HeLa_CUDC101_4h_R1 1 SGIETFSPPPPPPK 14 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 S(0.052)GIET(0.028)FS(0.921)PPPPPPK 101.53 0.0068909 12058000 4456.1 4599.6 3988.9 4153.8 4762.8 4063.9 3975 3264.3 4489.6 3823.3 TRUE FALSE FALSE 3933.762713 4741.308224 4204.552 4323.209918 4411.457733 3986.387878 4128.317082 3635.894717 4304.536788 3800.558842 1.035048496 1.247529224 1.106298356 1.137519533 1.160739227 1.048895187 1.086239486 0.956673707 1.132606274 1 11.89199586 -7.495615804 21.1738196 1.015462173 1.109069782 0.011709148 0.079991503 50.54962477 39261.25459 0.012305228 0.01335563 3.19E-08 7.495615804 0.093607609 GPSWDPFRDWYPHSR ddPTM_HeLa_CUDC101_4h_R1 2 GPSWDPFRDWYPHSR 15 1 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 0 ; ; 106.29 0.0018441 121794000 24943 17989.6 12088.3 16457.5 18876.7 13036.8 14816.7 19224.7 12062.3 8781.8 FALSE FALSE TRUE 22019.21935 18543.83825 12741.83006 17128.70799 17484.20345 12788.14476 15388.18508 21413.16214 11565.08689 8729.565463 2.5223729 2.124256738 1.459617906 1.962148982 2.002872139 1.464923405 1.762766446 2.452947083 1.324818164 1 13.09169413 KHSDS(ph)EVASLAR ddPTM_HeLa_CUDC101_4h_R1 1 KHSDSEVASLAR 12 1 X6R7X0;Q96MN5-2;Q96MN5 X6R7X0 TCEANC2 Transcription elongation factor A N-terminal and central domain-containing protein 2 1 0 KHS(0.39)DS(0.61)EVASLAR 66.989 0.033573 48317000 1273.6 1398.9 1025 1130.3 1478.2 1106.8 1158.2 1220 1375.8 1075.5 TRUE FALSE FALSE 1124.310539 1441.998451 1080.4146 1176.39852 1369.156131 1085.689634 1202.872162 1358.879869 1319.088942 1069.102878 1.05163924 1.348792974 1.010580574 1.100360446 1.280658914 1.015514649 1.125122929 1.271046871 1.233827884 1 10.06218497 -7.495155075 20.24068577 1.022781126 1.156746518 0 0.124840207 33.59187397 24526.56497 0.017416 0.018942495 3.20E-08 7.495155075 0.133965392 GPTSQESQLNAMK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GPTSQESQLNAMKR 14 1 Q96CB8 Q96CB8 INTS12 Integrator complex subunit 12 0 1 ; GPTSQESQLNAMK(1)R;GPTSQESQLNAMK(1)R 182.1 6.43E-13 834630 316.291 391.02 164.03 399.67 369.38 69.082 148.62 0 0 158.59 FALSE TRUE FALSE 279.2158484 403.0668627 172.897958 415.9702701 342.1315733 67.76437595 154.3523232 0 0 157.6466996 1.771149343 2.556773238 1.096743277 2.638623397 2.170242537 0.429849633 0.979102788 0 0 1 7.300551157 -5.243731024 24.44729292 1.587691836 0.520595817 0.309563862 0.775452084 536.5101526 740677.7628 0.092849023 0.236096246 5.71E-06 5.243731024 -1.067096019 (ac)AASAAAASAAAASAASGS(ph)PGPGEGSAGGEKR ddPTM_HeLa_CUDC101_4h_R1 3 AASAAAASAAAASAASGSPGPGEGSAGGEKR 31 1 Q13263-2;Q13263 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 1 0 AASAAAAS(0.022)AAAAS(0.192)AAS(0.051)GS(0.732)PGPGEGS(0.003)AGGEKR;AASAAAAS(0.004)AAAAS(0.038)AAS(0.139)GS(0.817)PGPGEGS(0.001)AGGEKR;AASAAAASAAAAS(0.001)AAS(0.018)GS(0.981)PGPGEGSAGGEKR ;; 95.444 4.59E-17 648384000 6588 6694.01 5690.85 5688.4 7208.99 6313.13 5155.38 5802.37 7098.49 5629.79 TRUE FALSE FALSE 5815.764627 6900.244514 5998.514565 5920.397539 6677.19717 6192.717564 5354.224734 6462.888347 6805.887238 5596.303759 1.039215325 1.233000354 1.071870796 1.057912114 1.193144164 1.106572808 0.956743051 1.154849455 1.216139711 1 12.45025856 -7.49514619 17.52706596 1.017298702 1.106454968 0 0.095746497 10.43477887 6595.953508 0.012329675 0.013452209 3.20E-08 7.49514619 0.089156266 KSSPS(ph)TGSLDSGNESK ddPTM_HeLa_CUDC101_4h_R1 1 KSSPSTGSLDSGNESK 16 1 A0A0U1RQT1;A0A087X1H5;Q15057 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 KS(0.064)S(0.262)PS(0.672)T(0.001)GSLDSGNESK 138.89 0.00071865 12595000 5485.1 3911.5 4634.4 4963.3 4288.6 4927.8 4198.6 4172.3 4780.5 5075 TRUE FALSE FALSE 4842.144893 4032.008679 4884.949682 5165.724827 3972.238522 4833.810425 4360.541408 4647.257767 4583.445767 5044.813674 0.95982631 0.799238374 0.96831122 1.023967417 0.787390532 0.958174224 0.864361241 0.921195126 0.908546096 1 12.30058527 -7.494833667 13.75747285 0.982288916 0.9046135 0.074374449 0.073255419 2.127014266 1043.218139 0.011543306 0.012660826 3.20E-08 7.494833667 -0.077675416 NRPEPHS(ph)DENGSTTPK ddPTM_HeLa_CUDC101_4h_R1 1 NRPEPHSDENGSTTPK 16 1 Q03701;C9J9W7 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 NRPEPHS(0.777)DENGS(0.085)T(0.108)T(0.03)PK 83.065 0.007483 1121900 378.45 535.76 342.89 363.33 282.92 481.42 375.52 372.13 208.66 311.76 TRUE FALSE FALSE 334.0886647 552.2661306 361.4276706 378.1481678 262.0495553 472.2377156 390.0039322 414.491775 200.0589465 309.9056377 1.078033518 1.782046092 1.166250712 1.220204223 0.845578536 1.52381131 1.258460269 1.337477363 0.645547942 1 8.27568519 -7.494702137 24.76984765 1.03442634 1.295566784 0.298075412 0.258687889 317.1256461 278785.9974 0.038638405 0.041884795 3.20E-08 7.494702137 0.261140444 TLSPT(ph)PASATAPTSQGIPTSDEESTPKK ddPTM_HeLa_CUDC101_4h_R1 2 TLSPTPASATAPTSQGIPTSDEESTPKK 28 1 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 T(0.06)LS(0.369)PT(0.57)PASATAPTSQGIPTSDEESTPKK;T(0.09)LS(0.373)PT(0.533)PAS(0.005)ATAPTSQGIPTSDEESTPKK ; 140.17 2.27E-15 38719000 4473.6 4528.3 4064.1 4305 4446.5 3686.7 3614.6 4285.8 4010.8 3850.9 TRUE FALSE FALSE 3949.21139 4667.811556 4283.817539 4480.576508 4118.490554 3616.38234 3754.016333 4773.678148 3845.473126 3827.994676 1.031665852 1.219388205 1.119076149 1.17047616 1.075887221 0.944719794 0.980674387 1.247044093 1.004565955 1 11.90237311 -7.494440939 20.7354135 1.013969811 1.100488805 0.193511241 0.089647947 62.57379839 45627.98784 0.016013042 0.017438295 3.20E-08 7.494440939 0.086518994 EVDYSDS(ph)LTEK ddPTM_HeLa_CUDC101_4h_R1 2 EVDYSDSLTEK 11 0 P51532-5;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;P51532;A0A2R8Y4C5;P51532-4;P51532-2;P51532-3;A0A2R8Y6V2;A0A2R8Y6N0;A0A2R8YG32;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y526;A0A2R8YDA1;A0A2R8Y7Y7;A0A2R8YF58;K7EQF0;A0A2R8Y5K3;A0A2R8Y523;A0A2R8YFK5;K7EP28 P51532-5 SMARCA4 Transcription activator BRG1 1 0 EVDYS(0.015)DS(0.905)LT(0.08)EK;EVDYS(0.039)DS(0.96)LTEK ; 202.29 1.27E-16 51385000 7409.6 5234 5808.7 5847.3 6034.4 7026.3 6188.8 5727.5 5180.6 6843.7 TRUE FALSE FALSE 6541.05792 5395.253336 6122.735892 6085.778168 5589.254334 6892.285034 6427.504089 6379.495449 4967.053475 6802.993368 0.96149703 0.793070498 0.900006153 0.894573585 0.821587503 1.01312535 0.944805285 0.937748297 0.730127637 1 12.73195397 -7.494037044 15.34543615 0.983019438 0.901550374 0 0.099038309 3.815167012 2030.361109 0.010391719 0.011395711 3.21E-08 7.494037044 -0.081469064 GPVEGYEENEEFLR ddPTM_HeLa_CUDC101_4h_R1 2 GPVEGYEENEEFLR 14 0 F5GYQ2;Q9UI30-2;Q9UI30;F5GX77 F5GYQ2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein 0 0 ; ; 219.74 7.52E-32 49481000 2427.21 2144 2076.44 2073.9 2031.45 2243.85 2217.45 2094.66 1952.47 2035.01 FALSE FALSE TRUE 2142.696123 2210.054099 2188.698627 2158.482606 1881.593981 2201.0523 2302.977789 2333.107627 1871.98836 2022.90567 1.059217024 1.092514659 1.081957829 1.067020889 0.930144202 1.088064724 1.13845041 1.153344747 0.925395775 1 10.98221333 HASSSPES(ph)PKPAPAPGSHR ddPTM_HeLa_CUDC101_4h_R1 2 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HASSS(0.001)PES(0.999)PKPAPAPGSHR;HAS(0.005)S(0.012)S(0.033)PES(0.95)PKPAPAPGSHR ; 83.964 0.002381 31306000 5295.1 3143.78 3175.91 3369.38 5892.1 4538.25 4279.05 4157.13 5412.8 4882.24 TRUE FALSE FALSE 4674.416405 3240.636136 3347.609301 3506.79788 5457.451522 4451.690442 4444.094392 4630.360876 5189.682093 4853.200219 0.963161665 0.667731804 0.689773582 0.722574327 1.124505744 0.917269068 0.915703905 0.954084041 1.069331958 1 12.24472066 -7.493414307 24.27725474 0.983747906 0.856273121 0.214941533 0.133229986 353.9924661 291676.1854 0.02432047 0.026467065 3.21E-08 7.493414307 -0.127474786 GPYVLGPADREDEEEDEEEEEQTDPK ddPTM_HeLa_CUDC101_4h_R1 1 GPYVLGPADREDEEEDEEEEEQTDPK 26 1 Q01970-2;Q01970 Q01970-2 PLCB3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3" 0 0 91.337 1.28E-05 6407600 1580.1 1387.3 1085.1 1540.4 1213.5 1168.9 1011.4 1084.9 1532.5 1621.3 FALSE FALSE TRUE 1394.883073 1430.041069 1143.763788 1603.22417 1123.982523 1146.60518 1050.410037 1208.400631 1469.329701 1611.656435 0.865496543 0.887311363 0.70968214 0.994767951 0.697408268 0.711445166 0.651758038 0.749787985 0.91168916 1 10.65432852 -2.635582731 0.086631552 1.199894623 8.88E-14 0.497778558 0.086831398 50.89819288 0.456318577 1.221687014 7.561047964 0.002314287 2.635582731 -1.199894623 SIYDDISS(ph)PGLGST(ph)PLTSR ddPTM_HeLa_CUDC101_4h_R1 1 SIYDDISSPGLGSTPLTSR 19 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4 Q8NFH5-2 NUP35 Nucleoporin NUP53 2 0 S(0.001)IY(0.006)DDIS(0.439)S(0.552)PGLGS(0.223)T(0.718)PLT(0.051)S(0.009)R 86.222 0.016851 10535000 2507.3 2164.4 1834.4 1449.8 2072.9 2300.1 1538.5 683.8 2047.3 1954.6 TRUE FALSE FALSE 2213.398095 2231.082599 1933.573213 1508.929111 1919.986297 2256.229425 1597.84046 761.641028 1962.909427 1942.973952 1.139180529 1.1482823 0.995161675 0.776607998 0.98816883 1.161224741 0.822368441 0.391997549 1.010260289 1 10.92405084 -4.361253201 2.730505776 1.046593133 0.335109824 0.755867467 0.108995822 0.135088545 1.508133383 0.016654001 0.191837801 4.35E-05 4.361253201 -0.711483309 down GQDGIGSK(ac)AEK ddPTM_HeLa_CUDC101_4h_R1 2 GQDGIGSKAEK 11 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 1 ; GQDGIGSK(1)AEK;GQDGIGSK(1)AEK 168.85 0.00011732 7676300 4616.3 4833.1 4930.5 4980.1 5347.6 5046.4 4487.8 4874.6 3267.7 3577.6 FALSE TRUE FALSE 4075.184312 4982.002082 5197.057744 5183.210004 4953.118202 4950.148328 4660.895949 5429.50476 3133.004023 3556.320276 1.14589913 1.400886786 1.461358185 1.457464346 1.392764942 1.391929844 1.310595106 1.52671985 0.880967905 1 11.79616954 -7.413208135 1.793199929 1.052278253 1.421623072 0.845520248 0.080435482 0.082588285 0.512364497 0.012808331 0.014342471 3.86E-08 7.413208135 0.369344818 LSNGNSRGS(ph)VSKS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 LSNGNSRGSVSKSSR 15 2 Q5T5P2;Q5T5P2-2;Q5T5P2-7;Q5T5P2-10;Q5T5P1;A0A1B0GU17;A0A0U1RQK8 Q5T5P2 KIAA1217 Sickle tail protein homolog 2 0 LSNGNS(0.036)RGS(0.881)VS(0.159)KS(0.65)S(0.275)R 103.43 0.012442 133030000 6542.9 6454.1 5507.9 5728.6 6488.9 5403.9 5648.3 5586.3 5309.2 5751 TRUE FALSE FALSE 5775.95118 6652.943171 5805.673734 5962.237069 6010.226775 5300.829611 5866.156823 6222.221811 5090.352529 5716.792796 1.010348177 1.16375447 1.015547343 1.042933911 1.051328426 0.927238366 1.026127242 1.088411288 0.89042103 1 12.48099029 -7.493177674 24.97343345 1.00456533 1.042260745 0.16193559 0.066503444 672.9750535 565861.0177 0.009733962 0.01059423 3.21E-08 7.493177674 0.037695415 SVS(ph)CDNVSK ddPTM_HeLa_CUDC101_4h_R1 1 SVSCDNVSK 9 0 Q96CB8;A0A087WXN4 Q96CB8 INTS12 Integrator complex subunit 12 1 0 S(0.257)VS(0.683)CDNVS(0.06)K 138.63 0.0020482 125940000 5495.6 3302.4 4689.6 4236.7 3833.1 3977.4 4091.2 5179.3 4252 5128.4 TRUE FALSE FALSE 4851.414099 3404.14303 4943.133961 4409.490939 3550.33985 3901.537722 4248.998954 5768.890577 4076.73076 5097.896049 0.95165026 0.667754501 0.969641969 0.864962898 0.696432374 0.765323122 0.833480894 1.131621854 0.799688876 1 12.31568624 -7.492263684 20.04198749 0.978670138 0.840603437 0 0.138132258 42.28725399 27684.77469 0.021243607 0.023289417 3.22E-08 7.492263684 -0.138066701 VSPAS(ph)PAGSPSADFAVHGESLGDR ddPTM_HeLa_CUDC101_4h_R1 2 VSPASPAGSPSADFAVHGESLGDR 24 0 A0A0A0MRP9;Q96C92-4;Q96C92-3;Q96C92-2;Q96C92 A0A0A0MRP9 SDCCAG3 Serologically defined colon cancer antigen 3 1 0 VS(0.042)PAS(0.958)PAGS(0.001)PSADFAVHGESLGDR;VS(0.206)PAS(0.793)PAGS(0.001)PSADFAVHGESLGDR ; 142.2 5.78E-09 48170000 3893.5 2662.7 3143.6 2490.7 3949.5 3132.8 2882.5 3630.7 4006 3649.3 TRUE FALSE FALSE 3437.109832 2744.734631 3313.552525 2592.281512 3658.153254 3073.04706 2993.678991 4044.004212 3840.870984 3627.593801 0.947490271 0.756626784 0.913429867 0.714600822 1.008424166 0.847130971 0.825251986 1.114789702 1.058793017 1 11.8247972 -7.491349024 11.69082455 0.976874918 0.87691471 0.183709203 0.112618566 1.176504438 434.1556289 0.017625958 0.019501186 3.23E-08 7.491349024 -0.099960208 GQESFK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 GQESFKK 7 1 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 0 1 ; GQESFK(1)K;GQESFK(1)K 115.49 0.0047646 32086000 6728.8 4993.9 5977.4 6573.4 5336.7 6144.9 6279.7 4901.4 5013.3 5394.6 FALSE TRUE FALSE 5940.060264 5147.75614 6300.556325 6841.491665 4943.022273 6027.696271 6521.910133 5459.355564 4806.649652 5362.512679 1.107700927 0.959952255 1.17492614 1.275799625 0.921773536 1.124043267 1.216204142 1.018059236 0.896342804 1 12.38869344 -9.950665991 0.346006342 0.928088232 1.113720996 0.211715842 0.109070293 7.855265017 0.844048259 0.586158621 0.041236368 1.12E-10 9.950665991 0.185632764 IETIAASST(ph)PTPIR ddPTM_HeLa_CUDC101_4h_R1 1 IETIAASSTPTPIR 14 0 Q96P47;Q96P47-2;Q96P47-4;Q96P47-5;H7C5G0;H7C4U6;E7ESL9;Q96P47-3;Q96P47-6 Q96P47 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" 1 0 IETIAAS(0.005)S(0.028)T(0.948)PT(0.019)PIR 139.74 0.0025779 14488000 2478.5 1568.8 1609.4 1710.3 1349.1 1322.3 1259.2 1866.5 1910.3 2652.6 TRUE FALSE FALSE 2187.973987 1617.132869 1696.409032 1780.053427 1249.579581 1297.079331 1307.767766 2078.974815 1831.556625 2636.822217 0.829776832 0.613288548 0.643353587 0.675075253 0.47389603 0.491910043 0.495963572 0.788439509 0.694607552 1 11.36458459 -7.491298311 0.710290712 0.971375182 0.559786718 0.353147627 0.128046351 0.204844078 0.22296365 0.027469797 0.027954238 3.23E-08 7.491298311 -0.411588463 GQFSTDELVAEVEKR ddPTM_HeLa_CUDC101_4h_R1 2 GQFSTDELVAEVEKR 15 1 A0A087WVQ6;Q00610-2;Q00610;A0A087WX41;P53675-2;P53675 A0A087WVQ6 CLTC;CLTCL1 Clathrin heavy chain;Clathrin heavy chain 1;Clathrin heavy chain 2 0 0 ; ; 178.47 1.72E-07 25473000 4325.5 3196.1 3676.3 2902.5 4106.6 4078.9 3742.4 3585.6 3634.9 3638.9 FALSE FALSE TRUE 3818.471447 3294.568053 3875.051898 3020.876496 3803.6643 4001.101778 3886.745622 3993.770211 3485.067883 3617.255661 1.055626642 0.910792148 1.071268459 0.835129385 1.051533167 1.106115286 1.07450122 1.104088454 0.963456335 1 11.82067985 -5.525408553 24.99997145 1.006431459 1.090522066 0.337438641 0.069056042 83.46828829 824849.34 0.0097397 0.019577382 2.98E-06 5.525408553 0.084090608 GQGEK(ac)SATPSR ddPTM_HeLa_CUDC101_4h_R1 2 GQGEKSATPSR 11 1 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 0 1 ; GQGEK(1)SATPSR;GQGEK(1)SATPSR 115.91 0.0033264 360970 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SPTLSQVHSPLVTS(ph)PSANLK ddPTM_HeLa_CUDC101_4h_R1 2 SPTLSQVHSPLVTSPSANLK 20 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 SPTLSQVHSPLVT(0.174)S(0.54)PS(0.286)ANLK;SPTLSQVHSPLVT(0.078)S(0.838)PS(0.083)ANLK ; 128.38 1.21E-05 39380000 2470.5 1359.82 1471.99 1342.68 2684.1 1934.83 1984.06 2085.38 2068.5 2329.4 TRUE FALSE FALSE 2180.911735 1401.714442 1551.570232 1397.440294 2486.09929 1897.926341 2060.585859 2322.77123 1983.235554 2315.544625 0.941856923 0.605349786 0.670067083 0.603503935 1.073656393 0.819645763 0.889892527 1.003120909 0.856487728 1 11.17713585 -7.491170549 19.47016627 0.97434996 0.807131278 0.107184757 0.152305449 35.06012546 21529.88714 0.026536806 0.029200594 3.23E-08 7.491170549 -0.167218682 GQGGAGAGDDEEED ddPTM_HeLa_CUDC101_4h_R1 2 GQGGAGAGDDEEED 14 0 P46781 P46781 RPS9 40S ribosomal protein S9 0 0 ; ; 155.15 0.00051234 48916000 18857.8 12549.7 18313.2 18945.4 15327.3 14645.8 14681.2 8708.9 18617.6 18966.2 FALSE FALSE TRUE 16647.31727 12936.34138 19303.26699 19718.0753 14196.63562 14366.45577 15247.4588 9700.285973 17850.17465 18853.3882 0.882988092 0.686154724 1.02386196 1.045863751 0.753001819 0.762009227 0.808738389 0.514511549 0.946788686 1 14.2025362 -3.62225714 0.543803868 0.937744758 3.81E-28 0.517713423 0.11181145 4.336998773 0.529540399 0.022182716 3.011998712 0.00023864 3.62225714 -0.937744758 GSLS(ph)NAGDPEIVK ddPTM_HeLa_CUDC101_4h_R1 1 GSLSNAGDPEIVK 13 0 F5H7V1;O43847;O43847-2 F5H7V1 NRD1 Nardilysin 1 0 GS(0.056)LS(0.944)NAGDPEIVK 102.64 0.0012377 0 1788.2 1231 1109.3 1556 1566.9 1457.7 1362.2 1385.6 1292.3 1707.2 TRUE FALSE FALSE 1578.589907 1268.925651 1169.272113 1619.460406 1451.312909 1429.896801 1414.74051 1543.331103 1239.030847 1697.045498 0.93019893 0.747726359 0.689004576 0.954282255 0.855199763 0.842580121 0.833649134 0.909422349 0.730110565 1 10.72880953 -7.49039261 4.214817826 0.970914019 0.833237525 0 0.104153507 0.152702162 5.673323054 0.013211913 0.014570046 3.23E-08 7.49039261 -0.137676493 GVHIHQAGGSPPASST(ph)SSSSLTNDVAK ddPTM_HeLa_CUDC101_4h_R1 1 GVHIHQAGGSPPASSTSSSSLTNDVAK 27 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 GVHIHQAGGS(0.02)PPAS(0.099)S(0.099)T(0.324)S(0.324)S(0.033)S(0.043)S(0.043)LT(0.016)NDVAK 71.002 9.05E-05 37891000 1999.4 1125.2 1485.6 1174.8 2210 1999.6 1523.1 1335.2 1860.3 1823.5 TRUE FALSE FALSE 1765.033363 1159.866078 1565.91603 1222.713422 2046.972703 1961.460962 1581.846477 1487.193771 1783.617647 1812.653741 0.973728916 0.639871837 0.863880395 0.674543292 1.129268462 1.082093572 0.872668862 0.820451108 0.983981445 1 10.82388765 -7.489655518 24.98493517 0.988409912 0.874442431 0.122175658 0.143604331 705.6702647 530691.3566 0.02567997 0.028296106 3.24E-08 7.489655518 -0.113967481 VVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_HeLa_CUDC101_4h_R1 1 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 VVLGDGVQLPPGDY(0.014)S(0.173)T(0.203)T(0.611)PGGT(0.011)LFS(0.258)T(0.22)T(0.482)PGGT(0.03)R 96.669 2.28E-09 62484000 12379 10362 9318 9417.3 10627 10305 9639.1 8629.1 11914 11853 TRUE FALSE FALSE 10927.95239 10681.24094 9821.759265 9801.378199 9843.067382 10108.44929 10010.88332 9611.401864 11422.89988 11782.49783 0.927473321 0.906534514 0.833588888 0.831859114 0.835397343 0.857920743 0.849640158 0.815735509 0.969480329 1 13.5243578 -7.488615164 0.610675265 0.989924311 0.831517023 0.907838168 0.018537945 0.133488256 0.112469454 0.006831841 0.006817809 3.25E-08 7.488615164 -0.158407289 GQK(ac)YFDSGDYNMAK ddPTM_HeLa_CUDC101_4h_R1 1 GQKYFDSGDYNMAK 14 1 H3BTD3;P56211-2;H3BMD8;O43768-6;O43768;O43768-2;O43768-5;P56211 H3BTD3;O43768;P56211 ARPP19;ENSA cAMP-regulated phosphoprotein 19;Alpha-endosulfine 0 1 GQK(1)YFDSGDYNMAK 221.09 2.19E-61 0 232.61 387.08 504.32 402.87 437.63 274.01 399.03 214.67 484.4 492.38 FALSE TRUE FALSE 205.3438084 399.005476 531.5850647 419.30078 405.3469068 268.7837158 414.4207208 239.1071651 464.432827 489.4513019 0.419538793 0.815209755 1.086083667 0.856675176 0.828165959 0.549153133 0.846704706 0.488520848 0.948884649 1 8.935021515 -4.248917823 22.74471474 0.760549382 0.488520242 0.151482014 0.195953727 1063.48187 1931626.896 0.033841212 0.713185328 5.64E-05 4.248917823 -0.27202914 CLLADLPLPPELPGGDDLS(ph)KSPEEKK ddPTM_HeLa_CUDC101_4h_R1 1 CLLADLPLPPELPGGDDLSKSPEEKK 26 2 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28;A0A2R8YF61;Q9BVE2;A0A087X209 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 CLLADLPLPPELPGGDDLS(0.5)KS(0.5)PEEKK 75.773 0.00016526 10768000 1237.5 1306.3 1174.9 1002.1 1137.7 1445.1 960.39 1165.8 1463.4 1029.7 TRUE FALSE FALSE 1092.442126 1346.545555 1238.418648 1042.969969 1053.774138 1417.537125 997.432564 1298.50996 1403.078033 1023.575299 1.067280666 1.315531507 1.209895012 1.018947967 1.02950329 1.384887978 0.974459393 1.268602282 1.370761911 1 9.999401522 -7.48847797 11.64350166 1.029630074 1.164508539 0 0.166449068 1.100302143 370.7460852 0.020941417 0.023287789 3.25E-08 7.48847797 0.134878465 DLPTIPGVTSPSSDEPPMEASQSHLRNS(ph)PEDKR ddPTM_HeLa_CUDC101_4h_R1 2 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 33 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 DLPTIPGVTSPS(0.002)S(0.002)DEPPMEAS(0.239)QS(0.239)HLRNS(0.517)PEDKR;DLPT(0.001)IPGVT(0.014)S(0.006)PS(0.013)S(0.013)DEPPMEAS(0.099)QS(0.099)HLRNS(0.755)PEDKR ; 66.437 7.99E-05 51282000 4258.7 2260.82 2455.89 2401.78 4511.1 3793.8 2981.82 3488.1 4020.5 3928.7 TRUE FALSE FALSE 3759.501642 2330.473184 2588.662842 2499.73497 4178.32514 3721.439586 3096.829796 3885.171205 3854.773288 3905.331918 0.962658673 0.596741387 0.662853477 0.64008259 1.069902694 0.952912496 0.7929748 0.994837644 0.987053948 1 11.93122945 -7.488291535 24.59804376 0.983526004 0.814608607 0.213552995 0.147814911 432.0394982 307264.739 0.026812276 0.029704748 3.25E-08 7.488291535 -0.168917396 RGS(ph)IGENQIKDEK ddPTM_HeLa_CUDC101_4h_R1 1 RGSIGENQIKDEK 13 2 E9PGZ1;Q05682-5;Q05682-4;C9J813 E9PGZ1 CALD1 Caldesmon 1 0 RGS(1)IGENQIKDEK 61.186 0.03113 542770000 8053.6 7822.1 7534.9 6964.7 7824.5 6936.5 7113.8 7035.4 7101.8 7062 TRUE FALSE FALSE 7109.569216 8063.08963 7942.259486 7248.75057 7247.302224 6804.197819 7388.181649 7836.281498 6809.060798 7019.99491 1.012759882 1.148589099 1.131376815 1.0325863 1.032379983 0.969259651 1.052448291 1.116280225 0.969952384 1 12.77725427 -7.487925258 24.81139837 1.005629321 1.065291473 0.296979369 0.051720408 476.6132491 338322.4388 0.009336794 0.010356272 3.25E-08 7.487925258 0.059662151 DTPRPDHPPHDGHS(ph)PASR ddPTM_HeLa_CUDC101_4h_R1 3 DTPRPDHPPHDGHSPASR 18 1 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 0 DTPRPDHPPHDGHS(0.979)PAS(0.021)R;DTPRPDHPPHDGHS(0.931)PAS(0.069)R;DT(0.016)PRPDHPPHDGHS(0.824)PAS(0.161)R ;; 66.889 0.0084122 2341840 813.277 368.867 549.59 524.908 564.17 731.92 724.95 381.08 900.04 761.05 TRUE FALSE FALSE 717.9459029 380.2313551 579.3024978 546.3160171 522.5523031 717.9598455 752.9115643 424.4606068 862.9399702 756.5232408 0.949007068 0.502603667 0.765743161 0.722140428 0.690728685 0.949025498 0.995225954 0.561067505 1.140665513 1 9.563240593 -7.487922573 23.83836023 0.977503315 0.754788502 0.421013188 0.151354141 209.7445335 143037.0136 0.024406299 0.027082602 3.25E-08 7.487922573 -0.222714812 GQSEEPAGK(ac)TK ddPTM_HeLa_CUDC101_4h_R1 2 GQSEEPAGKTK 11 1 O75152;E9PBY7;E9PQ61;A0A1B0GTU1;A0A494C0C4 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 0 1 ; GQSEEPAGK(1)TK;GQSEEPAGK(1)TK 91.313 0.021205 987140 837.14 1051.05 1041.65 946.84 1099.89 1049.92 1006.46 975.4 1100.92 1229.64 FALSE TRUE FALSE 739.0117182 1083.431605 1097.96475 985.4562278 1018.753306 1029.894525 1045.279499 1086.435593 1055.539612 1222.326047 0.604594593 0.886368746 0.898258491 0.806213883 0.833454633 0.842569401 0.855156038 0.888826346 0.863549962 1 10.25541345 -4.206085584 0.813003507 0.821115843 0.930847224 0 0.095438598 11.53363427 5.168465982 0.023664885 1.161667637 6.22E-05 4.206085584 0.10973138 EDNS(ph)EGEEILEEVGGDLEEEDDHHMEFCR ddPTM_HeLa_CUDC101_4h_R1 1 EDNSEGEEILEEVGGDLEEEDDHHMEFCR 29 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8Y8C1;A0A2R8YFD8;A0A2R8Y445;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR 108.71 1.62E-10 10165000 1198.8 751.54 1000.7 750.33 913.19 1196.8 870.74 927.9 717.37 1094.3 TRUE FALSE FALSE 1058.278481 774.6940566 1054.800869 780.9317006 845.825793 1173.973034 904.3247335 1033.528385 687.799705 1087.791055 0.972869262 0.712171748 0.969672314 0.717905977 0.77756274 1.079226593 0.831340476 0.950116643 0.632290275 1 10.08718575 -7.487398071 24.19842091 0.988030648 0.863383502 0 0.156372418 328.2017783 223841.5798 0.017807585 0.019796885 3.26E-08 7.487398071 -0.124647145 ITPLSLQTQGSSHET(ph)LNIVEEK ddPTM_HeLa_CUDC101_4h_R1 1 ITPLSLQTQGSSHETLNIVEEK 22 0 O43491;Q6R5J7;E9PMV8 O43491 EPB41L2 Band 4.1-like protein 2 1 0 ITPLSLQT(0.002)QGS(0.022)S(0.022)HET(0.954)LNIVEEK 107.09 3.30E-05 2224800 1501.5 673.57 574.34 686.62 1661.1 1525 1193.6 1016.9 1372.9 1540.5 TRUE FALSE FALSE 1325.496446 694.3218933 605.3905577 714.6233314 1538.563962 1495.913166 1239.637552 1132.659786 1316.308481 1531.337037 0.865581132 0.453408934 0.395334628 0.466666262 1.004719356 0.976867358 0.809513204 0.739654144 0.859581169 1 10.58057613 -7.487250011 7.091825322 0.941558977 0.696640341 0.199858938 0.200295401 0.252547393 37.1932241 0.038992295 0.04335438 3.26E-08 7.487250011 -0.244918635 LMTGVIS(ph)PERR ddPTM_HeLa_CUDC101_4h_R1 1 LMTGVISPERR 11 1 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 1 0 LMTGVIS(1)PERR 64.374 0.038847 12746000 2873.5 2582.7 2321.8 2560.5 2608 2380.9 1584.8 765.41 2928.1 2646.9 TRUE FALSE FALSE 2536.672686 2662.269926 2447.323531 2664.928257 2415.613036 2335.488299 1645.926267 852.5411805 2807.402479 2631.156121 0.964090525 1.011825146 0.93013239 1.012835474 0.918080465 0.887628173 0.625552491 0.32401771 1.066984379 1 11.36148114 -4.360105035 1.218559097 0.982321576 0.084288125 0.968184069 0.038628273 0.099890317 0.138973386 0.003881172 0.107468658 4.36E-05 4.360105035 -0.898033451 down GPQPPTVS(ph)PIR ddPTM_HeLa_CUDC101_4h_R1 2 GPQPPTVSPIR 11 0 P46087;P46087-4;P46087-2 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 GPQPPTVS(1)PIR;GPQPPT(0.011)VS(0.989)PIR ; 161.87 9.88E-05 271870000 3907.7 3748.6 3738 3500.8 3866.3 3315.9 2473.18 1875.63 3499 4241.5 TRUE FALSE FALSE 3449.64533 3864.089923 3940.087587 3643.577756 3581.090752 3252.654732 2568.571381 2089.144138 3354.769739 4216.271369 0.818174408 0.916470878 0.934495729 0.864170599 0.849350158 0.77145289 0.609204474 0.495495654 0.795672158 1 12.04175201 -4.359211097 0.74917811 0.91604781 0.253514147 0.840834423 0.057565962 0.711123657 0.306218104 0.011184437 0.382957894 4.37E-05 4.359211097 -0.662533663 down VPIVINPNAY(ph)DNLAIYK ddPTM_HeLa_CUDC101_4h_R1 1 VPIVINPNAYDNLAIYK 17 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 VPIVINPNAY(1)DNLAIYK 140.14 0.0011805 9865600 2066.3 1972.4 1914.1 1740.6 1893.7 2368 1858.7 1239.3 2214.4 1812.5 TRUE FALSE FALSE 1824.091446 2033.167306 2017.582036 1811.589192 1754.005524 2322.834345 1930.390682 1380.376903 2123.121495 1801.719169 1.012417183 1.128459607 1.119809385 1.005478114 0.973517712 1.289232187 1.071415964 0.766144317 1.178386472 1 10.81515844 -7.486894742 23.05969776 1.00547808 1.059375079 0 0.13696431 528.3594999 338594.6708 0.021091937 0.023493132 3.26E-08 7.486894742 0.053896999 AQST(ph)DS(ph)LGTSGSLQSK ddPTM_HeLa_CUDC101_4h_R1 1 AQSTDSLGTSGSLQSK 16 0 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 2 0 AQS(0.084)T(0.916)DS(1)LGTSGSLQSK 163.45 0.00013925 13692000 4942.9 3376.4 4204.1 3656.2 3920.7 4044.2 4011.6 3992.9 3472.1 4566.9 TRUE FALSE FALSE 4363.500755 3480.422882 4431.386363 3805.315639 3631.477772 3967.063623 4166.328756 4447.435596 3328.978568 4539.735876 0.961179433 0.766657572 0.97613308 0.838224016 0.79993151 0.873853398 0.91774695 0.979668359 0.733297852 1 12.14839265 -7.486329457 15.89475869 0.982877736 0.878226283 0 0.102087397 5.081661407 2210.234138 0.010921228 0.012192293 3.26E-08 7.486329457 -0.104651453 KASVVDPSTESSPAPQEGSEQPASPASPLSS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 KASVVDPSTESSPAPQEGSEQPASPASPLSSR 32 1 Q66K14;Q66K14-2 Q66K14 TBC1D9B TBC1 domain family member 9B 1 0 KASVVDPSTESSPAPQEGS(0.04)EQPAS(0.212)PAS(0.258)PLS(0.089)S(0.401)R 160.99 5.73E-18 93575000 3787.1 2725.7 3186.5 2636.5 3485.2 2973.4 3230.1 3045.1 3065.6 3465.7 TRUE FALSE FALSE 3343.181879 2809.675586 3358.771829 2744.027866 3228.103739 2916.687349 3354.686039 3391.741875 2939.23467 3445.085862 0.970420481 0.815560395 0.974945753 0.796504928 0.937016919 0.846622542 0.973759776 0.984515919 0.853167319 1 11.75032422 -7.486090643 16.45489654 0.986952772 0.903628108 0 0.076296801 7.784879861 3482.520966 0.010281483 0.011484352 3.27E-08 7.486090643 -0.083324664 DQDS(ph)SDDERALEDWVSSETSALPR ddPTM_HeLa_CUDC101_4h_R1 1 DQDSSDDERALEDWVSSETSALPR 24 1 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9;V9GYQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 0 DQDS(0.563)S(0.436)DDERALEDWVS(0.001)SETSALPR 57.238 0.0049883 2496900 333.37 378.18 342.14 306.96 365.73 296.21 385.55 227.36 148.54 283.12 TRUE FALSE FALSE 294.292874 389.8312775 360.6371233 319.4791556 338.7508265 290.5602878 400.4207927 253.2417434 142.4171183 281.4359896 1.045683156 1.385150769 1.28141793 1.135175199 1.203651413 1.032420509 1.422777496 0.89982004 0.506037336 1 8.13666302 -7.485600886 20.92137145 1.020153764 1.199554359 0.253695265 0.218548385 64.08834598 35969.25123 0.022879216 0.025590912 3.27E-08 7.485600886 0.179400595 SSDGS(ph)LSHEEDLAK ddPTM_HeLa_CUDC101_4h_R1 1 SSDGSLSHEEDLAK 14 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 SSDGS(0.5)LS(0.5)HEEDLAK 241.76 3.77E-44 7628500 1702.6 1236 1346.6 913.22 1982 1510.6 1351.1 1292.6 1293.8 1553.2 TRUE FALSE FALSE 1503.023809 1274.079695 1419.401269 950.4650589 1835.791809 1481.787822 1403.21238 1439.744359 1240.469016 1543.961497 0.973485292 0.825201728 0.919324265 0.615601529 1.189013982 0.959731071 0.908838972 0.93250017 0.803432611 1 10.59242106 -7.485526191 17.14251126 0.988303931 0.90863626 0 0.144585956 24.05596636 11041.3582 0.021988379 0.024593973 3.27E-08 7.485526191 -0.079667671 SKS(ph)DATASISLSSNLK ddPTM_HeLa_CUDC101_4h_R1 2 SKSDATASISLSSNLK 16 1 Q9UBF8-2;A0A0B4J1S8;Q9UBF8 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 S(0.001)KS(0.987)DAT(0.012)ASISLSSNLK;S(0.005)KS(0.808)DAT(0.171)AS(0.016)ISLSSNLK ; 173.34 2.61E-06 73370000 3842.1 2899.32 3087.9 2837.78 2859.98 3425.6 3034.26 2387.84 2862.32 3661.2 TRUE FALSE FALSE 3391.734862 2988.644613 3254.841214 2953.516934 2649.004973 3360.262387 3151.292425 2659.662054 2744.333958 3639.42302 0.931943015 0.821186379 0.894328908 0.811534388 0.727863994 0.92329536 0.865876928 0.730792227 0.754057427 1 11.82949403 -7.485088871 0.743071277 0.987995131 0.817042357 0 0.094779641 0.295907909 0.348261494 0.016522127 0.016983797 3.27E-08 7.485088871 -0.170952774 HGTDLWIDNMS(ph)SAVPNHSPEKK ddPTM_HeLa_CUDC101_4h_R1 1 HGTDLWIDNMSSAVPNHSPEKK 22 1 Q8N6H7;H0YF45;E9PJT7;E9PK28;E9PN48;E9PIY6 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 0 HGTDLWIDNMS(0.479)S(0.479)AVPNHS(0.041)PEKK 68.088 0.0015641 26738000 2804.9 1384.3 1157.3 1351.5 3246.9 2865 2127.9 2242.6 2581 2572.8 TRUE FALSE FALSE 2476.113874 1426.948642 1219.867139 1406.620012 3007.382656 2810.354898 2209.973816 2497.888519 2474.610088 2557.496871 0.968178652 0.557947366 0.476976982 0.549998722 1.175908635 1.09886934 0.864115941 0.976692698 0.967590661 1 11.32051676 -7.48489789 24.69038756 0.985961314 0.814054443 0.103774036 0.221469496 729.5002235 474233.557 0.041850769 0.046925962 3.27E-08 7.48489789 -0.171906872 GS(ph)SPLGPAGLGAEEPAAGPQLPSWLQPER ddPTM_HeLa_CUDC101_4h_R1 2 GSSPLGPAGLGAEEPAAGPQLPSWLQPER 29 0 O43482;H0YKL4 O43482 OIP5 Protein Mis18-beta;Protein yippee-like 1 0 GS(0.5)S(0.5)PLGPAGLGAEEPAAGPQLPSWLQPER;GS(0.5)S(0.5)PLGPAGLGAEEPAAGPQLPSWLQPER ; 171.23 1.01E-18 10461600 2747.2 2993 2448.16 2658.7 3116.7 2668.3 2405.22 2307.1 3022 2297.34 TRUE FALSE FALSE 2425.17738 3085.210782 2580.514935 2767.133278 2886.78725 2617.406623 2497.990141 2569.730938 2897.431881 2283.67532 1.061962425 1.35098486 1.129983283 1.211701705 1.264097057 1.146137807 1.09384645 1.125261072 1.268758241 1 11.15714184 -7.48452164 14.42477449 1.027322885 1.186602733 0 0.104835165 2.038605088 766.6345926 0.012559387 0.014070894 3.28E-08 7.48452164 0.159279847 GEVPPKET(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 GEVPPKETPK 10 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 GEVPPKET(1)PK 133.15 0.033377 30751000 2739.2 2729.2 2534.3 2371.2 2360 2120 2470.8 2767.5 2631.3 2410.5 TRUE FALSE FALSE 2418.115128 2813.283417 2671.311924 2467.907785 2185.907502 2079.564532 2566.099584 3082.541013 2522.8367 2396.162239 1.009161687 1.174078855 1.114829322 1.029941857 0.912253547 0.867873009 1.070920634 1.286449208 1.052865561 1 11.22650988 -7.484499064 24.86881452 1.004041842 1.055289213 0.020140326 0.114000835 1293.721235 838297.269 0.020374329 0.022871997 3.28E-08 7.484499064 0.051247372 WDKDDFES(ph)EEEDVK ddPTM_HeLa_CUDC101_4h_R1 4 WDKDDFESEEEDVK 14 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK;WDKDDFES(1)EEEDVK ;;; 157.91 0.00030938 352115000 15733.9 13266.2 12584.5 12472.6 12243.4 12434.1 12162.7 11312.5 13306.9 15524.1 TRUE FALSE FALSE 13889.59609 13674.9159 13264.85614 12981.28654 11340.22877 12196.94026 12631.81941 12600.26927 12758.38395 15431.76196 0.900065471 0.88615389 0.859581438 0.841205727 0.734862863 0.790378979 0.818559763 0.816515269 0.826761324 1 13.91361517 -7.482926385 0.408085969 1.000657241 0.781668948 0.246356351 0.058800188 0.261885362 0.119159959 0.019505254 0.01850906 3.29E-08 7.482926385 -0.218988293 SNSGLATYS(ph)PPMGPVSER ddPTM_HeLa_CUDC101_4h_R1 1 SNSGLATYSPPMGPVSER 18 0 H0Y465;P21359-2;P21359-6;P21359;J3KSB5;P21359-4 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 SNSGLAT(0.012)YS(0.987)PPMGPVSER 113.23 0.00033936 37597000 2693.6 2050.3 2278.1 1912.2 2638.7 2461.2 2117.4 2050 2178.4 2467.7 TRUE FALSE FALSE 2377.860291 2113.467313 2401.260977 1990.187781 2444.048358 2414.256711 2199.068827 2283.363714 2088.60543 2453.022011 0.969359541 0.861576987 0.978899075 0.8113208 0.996341797 0.984196921 0.896473337 0.930837026 0.851441781 1 11.26034446 -7.482532186 9.785544258 0.986536277 0.92416521 0 0.069068115 0.531848636 125.733585 0.008887544 0.009961408 3.29E-08 7.482532186 -0.062371067 HIVS(ph)NDSSDS(ph)DDESHEPK ddPTM_HeLa_CUDC101_4h_R1 1 HIVSNDSSDSDDESHEPK 18 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 2 0 HIVS(0.765)NDS(0.106)S(0.129)DS(0.817)DDES(0.183)HEPK 106.73 0.0020805 35063000 3907.5 2596.1 3051.4 2961 3359.7 3269.8 3050.2 2749.7 3354.5 3579.9 TRUE FALSE FALSE 3449.468773 2676.082764 3216.367914 3081.762379 3111.861624 3207.434013 3167.847236 3062.714733 3216.22609 3558.606596 0.969331304 0.75200298 0.903827897 0.866002548 0.874460703 0.901317391 0.890193156 0.860649991 0.903788043 1 11.79709674 -7.481173697 18.50165288 0.986470728 0.867945809 0.407306863 0.04843324 9.416088901 4177.487871 0.006690593 0.007554536 3.30E-08 7.481173697 -0.118524919 SNT(ph)PILVDGK ddPTM_HeLa_CUDC101_4h_R1 2 SNTPILVDGK 10 0 K7EQ48;A0A2U3TZU2;P06744;A0A0J9YXP8;A0A0J9YYH3;A0A2R8Y6C7;P06744-2;K7EP41;K7EPY4;A0A0J9YX90;K7ERC6 K7EQ48 GPI Glucose-6-phosphate isomerase 1 0 S(0.034)NT(0.966)PILVDGK;S(0.051)NT(0.949)PILVDGK ; 141.37 0.0054533 30453000 9813.9 7412.9 7201.6 7476.5 7328.6 7309.3 6482.6 5970.8 8213.6 10146.7 TRUE FALSE FALSE 8663.529519 7641.282663 7590.94028 7781.423986 6787.983779 7169.887281 6732.636054 6650.491737 7875.031932 10086.34698 0.858936297 0.757586734 0.752595593 0.771480894 0.672987336 0.710850747 0.667499945 0.659355835 0.780761553 1 13.30011614 -7.48100398 0.329955065 1.028302167 0.636009408 0.475613673 0.071166017 0.160785777 0.054837767 0.022611316 0.02111877 3.30E-08 7.48100398 -0.392292759 S(ph)HEAEVLK ddPTM_HeLa_CUDC101_4h_R1 3 SHEAEVLK 8 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 S(1)HEAEVLK;S(1)HEAEVLK;S(1)HEAEVLK ;; 135.8 0.0020259 101476000 31217.6 23229.8 29751.5 30584.1 25792.1 23084.7 18838.9 5442.66 28641.6 29062.2 TRUE FALSE FALSE 27558.32025 23945.4826 31359.95608 31831.45179 23889.46817 22644.39781 19565.52268 6062.230414 27460.98113 28889.33674 0.953927066 0.828869241 1.085520113 1.101840865 0.826930309 0.783832388 0.677257594 0.209843184 0.950557687 1 14.81824946 -4.359014122 1.111475848 0.977168233 9.63E-12 0.868820176 0.089207084 0.358842955 0.39677315 0.013291959 0.391821772 4.38E-05 4.359014122 -0.977168233 down S(ph)HHAASTTTAPTPAAR ddPTM_HeLa_CUDC101_4h_R1 2 SHHAASTTTAPTPAAR 16 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 S(1)HHAASTTTAPTPAAR;S(0.987)HHAAS(0.003)T(0.003)T(0.004)T(0.002)APTPAAR ; 93.381 0.0055364 1731450 753.45 357.48 351.01 282.36 794.19 850.49 640.12 305.438 782.86 712.31 TRUE FALSE FALSE 665.1317332 368.4935351 369.9866623 293.8758613 735.6041859 834.2683203 664.8096428 340.2078273 750.5901794 708.0731484 0.939354549 0.520417327 0.522526046 0.41503602 1.038881629 1.178223355 0.938899666 0.480469889 1.0600461 1 9.467754597 -7.480955352 18.12646242 0.973247047 0.744166412 0.203113756 0.244639347 27.63851047 11950.77345 0.045044174 0.050870658 3.30E-08 7.480955352 -0.229080635 TASISS(ph)SPSEGTPTVGSYGCTPQSLPK ddPTM_HeLa_CUDC101_4h_R1 1 TASISSSPSEGTPTVGSYGCTPQSLPK 27 0 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 T(0.256)AS(0.066)IS(0.077)S(0.301)S(0.259)PS(0.017)EGT(0.021)PT(0.002)VGS(0.001)YGCTPQSLPK 82.508 8.89E-06 10051000 2198.5 2429 2061 2199.6 2461.5 2449.1 1694 1539.1 2220.9 1916.5 TRUE FALSE FALSE 1940.795163 2503.834611 2172.423894 2289.309195 2279.920049 2402.387498 1759.338147 1714.304923 2129.353562 1905.100573 1.018736328 1.314279491 1.140319795 1.201673669 1.196745244 1.261029225 0.923488331 0.89985009 1.11771189 1 10.89565145 -7.480498803 24.94168004 1.008265929 1.138158217 0.067768623 0.129810623 557.1314388 327888.3707 0.02217577 0.025138849 3.31E-08 7.480498803 0.129892288 AFMES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 AFMESPK 7 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AFMES(1)PK;AFMES(1)PK ; 100.02 0.021887 68462000 14095.5 12801.2 16213.2 14106.8 11255.1 12004.6 9659.2 2779.7 12877.8 16155 TRUE FALSE FALSE 12443.24686 13195.5898 17089.73463 14682.13628 10424.8337 11775.63226 10031.75858 3096.129812 12346.97163 16058.90934 0.774850059 0.821699003 1.064190243 0.914267337 0.649161999 0.733277211 0.624684925 0.192798262 0.768854931 1 13.97108629 -4.357247409 0.886603549 0.895399567 1.25E-16 0.754087693 0.114244127 0.770875028 0.491679663 0.019587526 0.645131906 4.39E-05 4.357247409 -0.895399567 down GRDWNVDLIPK ddPTM_HeLa_CUDC101_4h_R1 2 GRDWNVDLIPK 11 1 P50395-2;P50395;Q5SX87;V9GYJ7;V9GYF8;Q5SX90;G5E9U5;Q5SX86;P31150 P50395-2 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha 0 0 ; ; 124.6 0.00404 58085000 11609.2 10810.3 10820.2 10777.8 12119.3 9874.3 10278.1 10994.4 10926.3 10420 FALSE FALSE TRUE 10248.38717 11143.35253 11405.17274 11217.36527 11225.28338 9685.964179 10674.52976 12245.95806 10475.91329 10358.02138 0.989415527 1.075818646 1.101095695 1.082964097 1.08372854 0.935117222 1.030556838 1.182268081 1.011381702 1 13.33846082 -7.263692606 24.7618176 0.995001775 1.06569653 0.227240001 0.058461997 187.2851602 2058167.13 0.009864308 0.011567288 5.45E-08 7.263692606 0.070694755 ALAEEAS(ph)EEELPS(ph)DVDLNDPYFAEEVK ddPTM_HeLa_CUDC101_4h_R1 1 ALAEEASEEELPSDVDLNDPYFAEEVK 27 0 Q9H501 Q9H501 ESF1 ESF1 homolog 2 0 ALAEEAS(1)EEELPS(0.991)DVDLNDPY(0.009)FAEEVK 77.925 0.00023386 1756400 321.69 346.35 336.11 305.77 308.19 273.82 225.26 380.59 334.6 264.26 TRUE FALSE FALSE 283.9819859 357.020633 354.2811233 318.2406223 285.4554377 268.5973397 233.9483537 423.9148272 320.8076464 262.6881698 1.081061192 1.359104345 1.348675594 1.211476796 1.086670321 1.022494998 0.890593413 1.613756826 1.22124893 1 8.03720742 -7.480475158 9.00125422 1.035558657 1.200016628 0.039267006 0.198640394 0.566052085 114.2563272 0.032270496 0.036217416 3.31E-08 7.480475158 0.164457971 FASAENIPDLPYDYSS(ph)SLESVADETSPEREGR ddPTM_HeLa_CUDC101_4h_R1 1 FASAENIPDLPYDYSSSLESVADETSPEREGR 32 1 P50747 P50747 HLCS Biotin--protein ligase;Biotin--[methylmalonyl-CoA-carboxytransferase] ligase;Biotin--[propionyl-CoA-carboxylase [ATP-hydrolyzing]] ligase;Biotin--[methylcrotonoyl-CoA-carboxylase] ligase;Biotin--[acetyl-CoA-carboxylase] ligase 1 0 FASAENIPDLPY(0.104)DY(0.082)S(0.092)S(0.209)S(0.209)LES(0.209)VADET(0.07)S(0.027)PEREGR 45.445 0.017655 6825600 618.05 767.8 627.55 717.77 761.68 524.17 515.36 649.43 719.13 528.66 TRUE FALSE FALSE 545.6031159 791.4550079 661.4772512 747.0437631 705.4923839 514.1723306 535.2376078 723.3584861 689.487157 525.5155068 1.038224579 1.506054527 1.258720709 1.421544661 1.342476815 0.978415145 1.018500122 1.376474104 1.312020574 1 9.037589525 -7.480389394 23.90097614 1.016863643 1.259660617 0.05667519 0.182230787 229.5174488 129108.5688 0.027826926 0.031536687 3.31E-08 7.480389394 0.242796974 GREEYEGPNK(ac)KPR ddPTM_HeLa_CUDC101_4h_R1 2 GREEYEGPNKKPR 13 3 P23246 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 1 ; GREEYEGPNK(0.976)K(0.024)PR;GREEYEGPNK(0.999)K(0.001)PR 110.93 0.0020895 53710000 7326.9 6469.3 6282.2 6875.5 7295.7 6751.8 7030.2 7016.1 4785.6 4897 FALSE TRUE FALSE 6468.051889 6668.611465 6621.834735 7155.912608 6757.510746 6623.020664 7301.357169 7814.784464 4588.335542 4867.872426 1.328722555 1.369923219 1.360313943 1.470028789 1.38818567 1.360557567 1.499907255 1.605379883 0.942575142 1 12.24907564 -11.97992803 0.135852149 8.16E-13 1.632098379 0.919554812 0.056017684 9.841406827 0.141614176 2.94302195 0.204997283 1.05E-12 11.97992803 1.632098379 SESQESLVT(ph)SPSKPK ddPTM_HeLa_CUDC101_4h_R1 1 SESQESLVTSPSKPK 15 1 E7EWD6;Q76L83;A0A5F9ZHN2;Q76L83-2 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 SESQESLVT(0.585)S(0.394)PS(0.021)KPK 82.877 0.020193 29197000 2756.5 2381.4 1959.9 2079.2 2515.9 2134.7 1888.9 1876.4 2647.3 2777.5 TRUE FALSE FALSE 2433.387249 2454.768111 2065.858122 2163.998763 2330.307069 2093.984154 1961.755506 2090.001791 2538.177174 2760.979306 0.881349325 0.889093267 0.74823383 0.783779421 0.844014681 0.758420807 0.71052887 0.756978434 0.919303222 1 11.43096436 -7.479908264 0.250594203 1.047966156 0.692983678 0.745284106 0.044213166 0.493846384 0.119419151 0.067210717 0.062348331 3.31E-08 7.479908264 -0.354982478 SIYDDIS(ph)SPGLGSTPLTSR ddPTM_HeLa_CUDC101_4h_R1 1 SIYDDISSPGLGSTPLTSR 19 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 SIYDDIS(0.808)S(0.19)PGLGS(0.001)T(0.001)PLTSR 109.67 0.00032895 8629600 3058.2 2994 2874.1 2815.9 3402 2705.2 2149.2 1168.9 3980.5 2957.4 TRUE FALSE FALSE 2699.722432 3086.241591 3029.48254 2930.744573 3151.041238 2653.602817 2232.095364 1301.962851 3816.422105 2939.809253 0.918332517 1.049810149 1.030503097 0.996916575 1.071852276 0.902644556 0.759265371 0.442873241 1.298186983 1 11.52150683 -4.355894747 1.644360899 0.981745507 0.312180633 0.730783679 0.11054788 0.176834649 0.524438859 0.008123947 0.176358179 4.41E-05 4.355894747 -0.669564874 down EDNPEEPSKEITSHEEGGGDVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 EDNPEEPSKEITSHEEGGGDVSPR 24 1 A0A1P0AZG4;Q96JN0-3 A0A1P0AZG4 1 0 EDNPEEPS(0.001)KEIT(0.004)S(0.011)HEEGGGDVS(0.984)PR 48.694 0.021412 7336000 2100.2 1841.6 1937.7 1947.6 2123.9 1989.3 1456.2 1878.2 2353.9 2053.9 TRUE FALSE FALSE 1854.01774 1898.337513 2042.457923 2027.031546 1967.224128 1951.357417 1512.366122 2092.006696 2256.871246 2041.683311 0.908082918 0.929790385 1.000379399 0.992823684 0.963530493 0.955759106 0.740744715 1.024647987 1.105397313 1 10.99554339 -7.479883825 0.009334883 1.89628343 2.62E-06 0.115562458 0.084793661 2301.325738 18.50555431 1883.136802 1874.319721 3.31E-08 7.479883825 -1.896280813 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVSVLS(ph)SGSPR ddPTM_HeLa_CUDC101_4h_R1 1 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVSVLSSGSPR 45 1 O14686;O14686-3;F8VWW4 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVS(0.048)VLS(0.434)S(0.328)GS(0.19)PR 100.06 9.64E-20 30348000 3682.3 2525.3 2946.8 2473.9 3941.8 3219.1 3097.6 2852.4 3222.2 3295.4 TRUE FALSE FALSE 3250.666376 2603.1015 3106.112922 2574.796335 3651.021267 3157.701031 3217.07547 3177.105686 3089.379552 3275.798814 0.992327844 0.794646328 0.948200148 0.786005637 1.114543803 0.963948402 0.98207358 0.969872042 0.943091969 1 11.67763104 -7.478707294 24.98829839 0.996615365 0.937843423 0.031302418 0.090238698 806.3721249 456177.2764 0.014762802 0.016779775 3.32E-08 7.478707294 -0.058771942 TPITSVPLGPLASS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 2 TPITSVPLGPLASSPTK 17 0 Q15911 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 TPITSVPLGPLAS(0.027)S(0.972)PT(0.001)K;TPITSVPLGPLAS(0.016)S(0.965)PT(0.019)K ; 274.16 4.51E-86 106621000 8134.3 6274.8 5907.1 5839.9 5810.9 6170.8 6344.9 7039.2 7090.8 7814.4 TRUE FALSE FALSE 7180.809685 6468.119151 6226.455694 6078.076364 5382.241484 6053.102271 6589.624918 7840.514075 6798.514223 7767.919601 0.924418641 0.832670713 0.801560265 0.782458712 0.692880689 0.779243682 0.848312709 1.00934542 0.875203989 1 12.92331255 -7.476977093 1.32239576 0.976215369 0.809836299 0.243699811 0.082848608 0.263356505 0.912460535 0.016739007 0.01810904 3.33E-08 7.476977093 -0.16637907 GGTVS(ph)PPPGTSR ddPTM_HeLa_CUDC101_4h_R1 1 GGTVSPPPGTSR 12 0 Q16584;Q16584-2;E9PID4 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 0 GGTVS(0.999)PPPGTSR 103.97 0.0083224 13755000 3673.2 3749.8 3462.7 3870.1 3764.8 3149.7 3132.5 2992.2 3265.2 3126.4 TRUE FALSE FALSE 3242.633064 3865.326893 3649.904036 4027.939406 3487.078205 3089.62472 3253.321574 3332.819953 3130.607074 3107.804034 1.043384019 1.243748593 1.174431848 1.29607252 1.122039281 0.994150431 1.046823268 1.07240351 1.007337348 1 11.60167982 -7.476874198 12.36738777 1.019117743 1.134644803 0.296748641 0.084577833 1.548010856 415.3016234 0.015947037 0.018035791 3.34E-08 7.476874198 0.11552706 SQCRNS(ph)PSNLSSSSDTGSVGGTYR ddPTM_HeLa_CUDC101_4h_R1 2 SQCRNSPSNLSSSSDTGSVGGTYR 24 1 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 S(0.115)QCRNS(0.852)PS(0.032)NLSSSSDTGSVGGTYR;S(0.216)QCRNS(0.624)PS(0.158)NLS(0.001)SSSDTGSVGGTYR ; 87.648 2.99E-05 26212000 689.18 844.47 836.55 612.22 845.17 670.79 698.78 672.58 915.44 514.11 TRUE FALSE FALSE 608.3953651 870.4871198 881.7764234 637.1889778 782.8234929 657.9957984 725.7321787 749.1437885 877.7051757 511.0520509 1.190476321 1.703323797 1.725414118 1.24681816 1.531788184 1.287531862 1.420074878 1.465885495 1.717447713 1 8.997326427 -7.476070969 4.331433276 1.079863516 1.475475301 0 0.249908284 0.114421952 4.310216616 0.027972192 0.031053173 3.34E-08 7.476070969 0.395611785 LDSSEMDHS(ph)ENEDYTMSSPLPGK ddPTM_HeLa_CUDC101_4h_R1 2 LDSSEMDHSENEDYTMSSPLPGK 23 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 LDS(0.001)S(0.001)EMDHS(0.995)ENEDY(0.002)T(0.002)MSSPLPGK;LDS(0.006)S(0.006)EMDHS(0.986)ENEDY(0.002)T(0.001)MSSPLPGK ; 107.47 7.43E-06 49318000 8959.2 6058.6 6302.9 6596.7 7796.1 7675.7 7395 6935 6602.8 8493.5 TRUE FALSE FALSE 7909.016157 6245.258285 6643.653839 6865.741939 7220.997235 7529.298811 7680.227627 7724.452368 6330.629789 8442.980284 0.93675644 0.739698314 0.786884917 0.813189384 0.855266386 0.891782115 0.909658363 0.914896412 0.749809851 1 13.04353663 -7.475654666 6.327381221 0.972639019 0.845007942 0 0.087927268 0.132245579 12.41061347 0.010453938 0.011706248 3.34E-08 7.475654666 -0.127631077 GDTPGHAT(ph)PGHGGATSSAR ddPTM_HeLa_CUDC101_4h_R1 3 GDTPGHATPGHGGATSSAR 19 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 GDT(0.001)PGHAT(0.999)PGHGGATS(0.001)SAR;GDT(0.007)PGHAT(0.988)PGHGGAT(0.001)S(0.002)S(0.002)AR;GDTPGHAT(0.995)PGHGGAT(0.002)S(0.002)S(0.002)AR ;; 108.28 0.00052477 14399800 2324.24 1003.599 1193.48 1046.96 2488.09 2077.54 2496.68 1389.34 1859.36 2103.04 TRUE FALSE FALSE 2051.796111 1034.518696 1258.003139 1089.659554 2304.548558 2037.914386 2592.977784 1547.49685 1782.716394 2090.531025 0.981471256 0.494859289 0.601762482 0.521235773 1.102374722 0.97483097 1.240344082 0.740241035 0.852757684 1 11.02965374 -7.475109204 24.99924995 0.991825926 0.819422272 0.05283708 0.234242969 710.149625 371644.9742 0.041982146 0.04787533 3.35E-08 7.475109204 -0.172403654 AAGISLIVPGKS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 AAGISLIVPGKSPTR 15 1 F2Z357;J3KPC5;P47736;P47736-3;P47736-4 F2Z357 RAP1GAP Rap1 GTPase-activating protein 1 1 0 AAGIS(0.002)LIVPGKS(0.949)PT(0.048)R 120.59 0.0045889 49722000 2488.1 2588.3 2476.6 2584.7 3100.5 2140 2318.5 2108 2632.5 2917.7 TRUE FALSE FALSE 2196.44869 2668.042455 2610.492487 2690.115238 2871.782292 2099.183065 2407.925322 2347.966199 2523.987236 2900.345391 0.757305905 0.919905079 0.900062626 0.927515477 0.990151829 0.723770028 0.830220197 0.8095471 0.870236781 1 11.502009 -7.474610804 0.018042808 1.752956395 3.18E-06 0.130062745 0.081991295 465.3518858 7.247926116 352.9897663 349.9626698 3.35E-08 7.474610804 -1.752953215 SPVGKSPPS(ph)TGSTYGSSQKEESAASGGAAYTK ddPTM_HeLa_CUDC101_4h_R1 1 SPVGKSPPSTGSTYGSSQKEESAASGGAAYTK 32 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.023)PVGKS(0.118)PPS(0.32)T(0.32)GS(0.135)T(0.049)Y(0.017)GS(0.008)S(0.008)QKEES(0.002)AAS(0.001)GGAAYTK 46.101 0.012165 44037000 2112.1 1247.1 1776.1 1610.2 1697.7 1484.8 1426 1634.9 1958.5 1996.8 TRUE FALSE FALSE 1864.52284 1285.521673 1872.121338 1675.870916 1572.464053 1456.479914 1481.001298 1821.010408 1877.769801 1984.922945 0.939342681 0.647643112 0.943170788 0.844300239 0.792204079 0.733771514 0.746125335 0.917421209 0.946016472 1 10.95486729 -7.474483828 12.2648236 0.973271674 0.80427806 0.43898123 0.082574227 0.868470526 219.5663918 0.013609695 0.015424567 3.35E-08 7.474483828 -0.168993614 DCLCQLCAQPMSS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 DCLCQLCAQPMSSSPK 16 0 F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639;A0A494C1P1;A0A494C1G0 F8W8M4 ABLIM1 Actin-binding LIM protein 1 1 0 DCLCQLCAQPMS(0.328)S(0.657)S(0.015)PK 154.46 2.60E-07 0 845.76 1228.1 946.75 1036.5 1118.1 1274.9 773.47 681.84 1051.2 563.57 TRUE FALSE FALSE 746.6212949 1265.936305 997.9341688 1078.77295 1035.619991 1250.583407 803.302997 759.4579095 1007.869091 560.2178606 1.33273383 2.259721431 1.781332298 1.925631127 1.848602238 2.232316202 1.433911793 1.355647442 1.799066331 1 9.129844169 -7.47432863 4.479111061 1.140012833 1.836927283 0.197767129 0.346920943 0.118613844 4.787277511 0.051435062 0.057184233 3.35E-08 7.47432863 0.69691445 VVPGQFDDADSS(ph)DSENRDLK ddPTM_HeLa_CUDC101_4h_R1 3 VVPGQFDDADSSDSENRDLK 20 1 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 0 VVPGQFDDADS(0.118)S(0.764)DS(0.118)ENRDLK;VVPGQFDDADS(0.158)S(0.842)DSENRDLK;VVPGQFDDADS(0.042)S(0.958)DSENRDLK ;; 116.92 2.66E-05 464173000 8423 8133.6 7912.8 7598.2 8885.8 7549.6 7657.4 7079.4 8127 7105.5 TRUE FALSE FALSE 7435.668708 8384.186575 8340.589903 7908.087438 8230.312237 7405.603958 7952.748483 7885.29028 7792.00162 7063.23617 1.052728315 1.187017731 1.180845395 1.11961249 1.165232485 1.048471802 1.125935519 1.116384911 1.103177274 1 12.78611362 -7.474259044 3.858956325 1.021823849 1.133411809 0.365177141 0.046185025 0.111958148 3.256339803 0.007393321 0.008192852 3.36E-08 7.474259044 0.111587959 LS(ph)PTFPESIEHPLAR ddPTM_HeLa_CUDC101_4h_R1 2 LSPTFPESIEHPLAR 15 0 M9T4I7;Q5U5Q3 M9T4I7 MEX3C RNA-binding E3 ubiquitin-protein ligase MEX3C 1 0 LS(0.998)PT(0.002)FPESIEHPLAR;LS(0.996)PT(0.004)FPESIEHPLAR ; 154.52 8.11E-05 12008400 4215.2 2829.9 2873.8 2954.2 4190.3 3880.8 3230.9 2984.2 4446.8 3943 TRUE FALSE FALSE 3721.100646 2917.085865 3029.166321 3074.685045 3881.189917 3806.780206 3355.516895 3323.909265 4263.501022 3919.546861 0.949370113 0.744240589 0.772835848 0.78444911 0.990213934 0.97122967 0.85609817 0.848034067 1.087753552 1 11.93647116 -7.474177814 10.26918212 0.977731064 0.856018702 0.426006536 0.082754828 0.568993986 118.194835 0.014234723 0.016098413 3.36E-08 7.474177814 -0.121712362 APGYPSS(ph)PVTTASGTTLR ddPTM_HeLa_CUDC101_4h_R1 3 APGYPSSPVTTASGTTLR 18 0 Q9HCK8-2;Q9HCK8;H0YJG4;H0YJA4 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 APGYPSS(0.998)PVT(0.001)T(0.001)ASGTTLR;APGYPS(0.047)S(0.951)PVT(0.001)TASGTTLR;APGYPSS(0.997)PVT(0.002)TASGTTLR ;; 234.36 1.00E-43 180110000 4244.9 4306.88 3682.52 3539.38 4423.53 4281.89 3980.34 3612.75 3904.57 3738.12 TRUE FALSE FALSE 3747.319257 4439.569868 3881.60817 3683.731215 4097.215005 4200.220082 4133.863047 4024.010857 3743.621972 3715.885496 1.008459292 1.194754217 1.044598434 0.991346805 1.102621437 1.130341634 1.11248397 1.082921113 1.007464298 1 11.85949033 -7.473043197 24.97271723 1.003731974 1.09149319 0.397557811 0.050066203 262.7962545 131688.6412 0.008580648 0.009795137 3.36E-08 7.473043197 0.087761216 EGIMNPETSKHHGISLIMFHYS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 EGIMNPETSKHHGISLIMFHYSK 23 1 H0YAF7 H0YAF7 NLN 1 0 EGIMNPETSKHHGIS(0.002)LIMFHY(0.01)S(0.988)K 47.52 0.002767 0 909.7 620.93 513.49 886.23 694.63 749.72 659.42 535.9 534.14 885.06 TRUE FALSE FALSE 803.066345 640.0601173 541.2508226 922.37429 643.3885288 735.4203401 684.8540503 596.9046898 512.1225231 879.7956238 0.912787383 0.727510003 0.615200631 1.048396088 0.731293168 0.835899066 0.778424025 0.678458353 0.582092601 1 9.781024615 -7.472218059 3.140838962 0.964859562 0.779532643 0 0.163322386 0.192077227 3.662217578 0.019406301 0.021434738 3.37E-08 7.472218059 -0.185326918 VVVS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 3 VVVSPTK 7 0 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 1 0 VVVS(0.987)PT(0.013)K;VVVS(1)PTK;VVVS(0.968)PT(0.032)K ;; 104.42 0.007761 102532000 21219.2 15980.7 15426.1 14919.7 14550.7 15727.2 14681.4 14442.9 19420.8 21418.2 TRUE FALSE FALSE 18731.91754 16473.04643 16260.08163 15528.18985 13477.32385 15427.22986 15247.66652 16087.02136 18620.2664 21290.80359 0.879812613 0.773716518 0.763713852 0.729337894 0.633011516 0.724595941 0.716162095 0.755585447 0.874568511 1 14.37794278 -7.472122657 0.685975681 0.979528977 0.702875461 0.774629977 0.047299233 0.125819815 0.12868911 0.011205887 0.011504903 3.37E-08 7.472122657 -0.276653516 DFTNEAPPAPLPDASAS(ph)PLSPHR ddPTM_HeLa_CUDC101_4h_R1 4 DFTNEAPPAPLPDASASPLSPHR 23 0 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DFTNEAPPAPLPDAS(0.342)AS(0.585)PLS(0.073)PHR;DFTNEAPPAPLPDAS(0.337)AS(0.636)PLS(0.027)PHR;DFTNEAPPAPLPDAS(0.341)AS(0.578)PLS(0.08)PHR;DFTNEAPPAPLPDAS(0.143)AS(0.851)PLS(0.005)PHR ;;; 171.49 4.80E-10 48468300 11982 7350.7 7976.2 7093 10974.4 9713.3 9700.1 10337.5 10340.8 11498.3 TRUE FALSE FALSE 10577.48812 7577.166354 8407.417499 7382.283199 10164.84038 9528.034986 10074.23611 11514.27921 9914.547847 11429.9076 0.925422015 0.66292455 0.735563033 0.645874267 0.889319558 0.8336056 0.881392611 1.007381653 0.867421522 1 13.48052612 -7.471966685 8.042386267 0.967375774 0.804911471 0.202191791 0.107763357 0.267436469 38.3260124 0.01877966 0.021183873 3.37E-08 7.471966685 -0.162464303 QAPGVGAVGGGS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 QAPGVGAVGGGSPER 15 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 QAPGVGAVGGGS(1)PER;QAPGVGAVGGGS(1)PER ; 94.639 0.0081535 31103000 3978.7 4651.9 3833.3 3551.4 3732.3 3800.6 3669.6 3846.4 3877.1 3493.3 TRUE FALSE FALSE 3512.322817 4795.219525 4040.539793 3696.241442 3456.975665 3728.109887 3811.137701 4284.258628 3717.284297 3472.521696 1.011461734 1.380904122 1.163575104 1.06442573 0.995523129 1.073603051 1.097512999 1.233760075 1.07048555 1 11.76176799 -7.471313552 24.99887524 1.005056237 1.136247092 0.203618999 0.102374495 345.3526262 167428.398 0.017663664 0.020175014 3.38E-08 7.471313552 0.131190855 QDPFQESGLHLS(ph)PTAAEAK ddPTM_HeLa_CUDC101_4h_R1 3 QDPFQESGLHLSPTAAEAK 19 0 H3BN50;H3BQS0;Q15599-3;Q15599 H3BN50 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 0 QDPFQESGLHLS(0.967)PT(0.033)AAEAK;QDPFQESGLHLS(0.914)PT(0.086)AAEAK;QDPFQES(0.013)GLHLS(0.844)PT(0.143)AAEAK ;; 111.45 0.00027369 83309000 10453.5 6736.8 6716.9 5476.1 9524.5 9268.9 7456.3 3348.96 9054.5 10552.4 TRUE FALSE FALSE 9228.156576 6944.352823 7080.035932 5699.439028 8821.89661 9092.111176 7743.891989 3730.192069 8681.269678 10489.63386 0.87974058 0.662020517 0.674955487 0.54334013 0.841010919 0.866771071 0.738242354 0.355607462 0.827604643 1 13.3566767 -7.470927869 1.839984275 0.957324016 0.679264566 0.334284701 0.145455267 0.226721521 1.505683328 0.027425917 0.030050023 3.38E-08 7.470927869 -0.27805945 DSLAS(ph)LVLCGVS(ph)LLLSASFLPAT(ph)LTMTVDK ddPTM_HeLa_CUDC101_4h_R1 1 DSLASLVLCGVSLLLSASFLPATLTMTVDK 30 0 Q02763-3 Q02763-3 3 0 DS(0.004)LAS(0.69)LVLCGVS(0.69)LLLS(0.265)AS(0.265)FLPAT(0.505)LT(0.504)MT(0.077)VDK 47.807 0.0020657 0 861.85 733.2 645.77 720.81 577.54 760.59 880.87 494.57 951.66 814.34 TRUE FALSE FALSE 760.8252495 755.7890229 680.6822795 750.2077474 534.9360248 746.083013 914.845451 550.8698497 912.432172 809.4962695 0.93987493 0.933653497 0.840871422 0.926758746 0.660825806 0.921663312 1.130141652 0.680509436 1.127160441 1 9.660880622 -7.468656971 0.892078476 0.984386582 0.869366462 0.212522254 0.133034353 0.76873195 1.255286266 0.029689768 0.031439505 3.40E-08 7.468656971 -0.11502012 ADQEQQDPLEY(ph)LQSDEEDDEKR ddPTM_HeLa_CUDC101_4h_R1 1 ADQEQQDPLEYLQSDEEDDEKR 22 1 Q7RTV3 Q7RTV3 ZNF367 Zinc finger protein 367 1 0 ADQEQQDPLEY(0.814)LQS(0.186)DEEDDEKR 100.28 0.00015567 22149000 1219 792.67 745.51 720.55 973.1 564.17 538.21 653.07 1369.9 1382.5 TRUE FALSE FALSE 1076.110668 817.0912232 785.8145256 749.9371435 901.3163517 553.4093972 558.96894 727.412849 1313.432142 1374.276829 0.783037773 0.594560867 0.571802209 0.545695836 0.65584774 0.402691354 0.406736786 0.529305911 0.955726033 1 10.42445693 -7.467789541 0.404216988 1.016279426 0.434406855 0.88317979 0.067357463 0.217271197 0.097491515 0.042764804 0.041119572 3.41E-08 7.467789541 -0.581872571 HTNPSSSSPGT(ph)RT ddPTM_HeLa_CUDC101_4h_R1 1 HTNPSSSSPGTRT 13 1 Q8WUH2 Q8WUH2 TGFBRAP1 Transforming growth factor-beta receptor-associated protein 1 1 0 HTNPSS(0.038)S(0.012)S(0.19)PGT(0.38)RT(0.38) 115.58 0.030696 2941600 1023.4 331.37 578.96 662.88 1085.4 791.29 808.06 475.92 1149.8 924.15 TRUE FALSE FALSE 903.4386034 341.5791169 610.2603289 689.9151116 1005.332204 776.1974616 839.2271449 530.0968091 1102.404757 918.6531147 0.983438241 0.371826004 0.664298982 0.751007209 1.094354537 0.844929875 0.913540847 0.577036969 1.200022881 1 9.84337639 -7.467583468 24.99994906 0.992694185 0.759799217 0.338671115 0.194672132 307.1045865 138847.9283 0.032069297 0.036653877 3.41E-08 7.467583468 -0.232894968 DQPDGSSLS(ph)PAQS(ph)PSQSQPPAASSLR ddPTM_HeLa_CUDC101_4h_R1 1 DQPDGSSLSPAQSPSQSQPPAASSLR 26 0 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 2 0 DQPDGS(0.048)S(0.169)LS(0.807)PAQS(0.962)PS(0.013)QSQPPAASSLR 92.887 2.28E-05 7189600 893.84 629.01 656.97 662.74 712.61 579.79 583.69 547.04 720.55 920.87 TRUE FALSE FALSE 789.0654302 648.3890525 692.4877854 689.7694018 660.04218 568.7314717 606.2031188 609.3128224 690.848624 915.3926243 0.86199671 0.708317978 0.756492643 0.753523006 0.721048174 0.621297853 0.662232907 0.665630033 0.754701978 1 9.838246857 -7.467418634 0.371504738 1.018693079 0.631270751 0.369619716 0.082922171 0.202825311 0.081004253 0.027136854 0.025893699 3.41E-08 7.467418634 -0.387422328 HIKEEPLS(ph)EEEPCTSTAIAS(ph)PEKK ddPTM_HeLa_CUDC101_4h_R1 2 HIKEEPLSEEEPCTSTAIASPEKK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 HIKEEPLS(0.986)EEEPCT(0.072)S(0.298)T(0.221)AIAS(0.423)PEKK;HIKEEPLS(0.998)EEEPCT(0.013)S(0.028)T(0.068)AIAS(0.894)PEKK ; 76.891 0.0020195 385834000 6340.2 6213.4 5719.2 5811.2 5700.9 6685.5 5429.4 5368.7 5535.4 5414.5 TRUE FALSE FALSE 5597.011367 6404.827489 6028.397252 6048.205854 5280.355965 6557.985226 5638.813777 5979.851107 5307.228469 5382.294313 1.039893221 1.189980911 1.120042291 1.123722618 0.981060428 1.218436757 1.047659873 1.11102269 0.986053189 1 12.39400557 -7.467285819 8.236241267 1.017468081 1.110698077 0.365258503 0.063424823 0.273318895 37.38848107 0.010169626 0.011507875 3.41E-08 7.467285819 0.093229996 DRKSMSVY(ph)CT(ph)PNK ddPTM_HeLa_CUDC101_4h_R1 2 DRKSMSVYCTPNK 13 2 H7C5W9;P16615-5;P16615-2;P16615-3;P16615-4;P16615 H7C5W9 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 2 0 DRKS(0.002)MS(0.001)VY(0.998)CT(0.999)PNK;DRKS(0.001)MSVY(0.999)CT(1)PNK ; 55.414 0.028331 44058000 3627.8 4086.9 4732.2 4365 5169.8 4233.1 3604.3 3525.2 4248.1 2455.3 TRUE FALSE FALSE 3202.554783 4212.812545 4988.037046 4543.023567 4788.434154 4152.36067 3743.319058 3926.494519 4072.99152 2440.695766 1.312148293 1.726070329 2.043694718 1.861364136 1.961913574 1.701302033 1.533709817 1.608760327 1.668782966 1 11.25307676 -7.465745075 1.732800154 1.110095206 1.790446193 0.359596419 0.234259821 0.123504623 0.727007833 0.035571266 0.039003059 3.42E-08 7.465745075 0.680350988 VGNES(ph)PVQELKQDVSK ddPTM_HeLa_CUDC101_4h_R1 1 VGNESPVQELKQDVSK 16 1 Q5JSH3-2;Q5JSH3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 VGNES(1)PVQELKQDVSK 64.04 0.026744 19639000 2353.7 3193.5 3155.6 3192.1 3663.3 2989 3269.5 3644.4 2918.9 1336 TRUE FALSE FALSE 2077.802854 3291.88795 3326.201281 3322.287635 3393.065657 2931.989805 3395.60571 4059.263765 2798.581707 1328.053413 1.564547656 2.478731592 2.504568905 2.501622001 2.554916561 2.207734853 2.556829174 3.056551586 2.107280987 1 10.37509746 -7.464409534 1.068189027 1.150329671 2.583740814 0.53567545 0.377706869 0.107775013 0.246592579 0.05449685 0.058635344 3.43E-08 7.464409534 1.433411143 LQS(ph)PLPGESAAK ddPTM_HeLa_CUDC101_4h_R1 1 LQSPLPGESAAK 12 0 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 0 LQS(0.988)PLPGES(0.012)AAK 102.5 0.0095436 16407000 3943.5 2700.3 2628.8 2503.3 3102.5 2796.1 2616 4244.6 4014 3816.4 TRUE FALSE FALSE 3481.248908 2783.493042 2770.92088 2605.395394 2873.634756 2742.769051 2716.899996 4727.788107 3848.541221 3793.699883 0.917639512 0.733714613 0.730400655 0.686768979 0.757475511 0.722979976 0.716161025 1.246220906 1.014455898 1 11.88938984 -7.464254482 3.062579901 0.966930391 0.784718773 0.214515467 0.155571952 0.275333068 4.952457776 0.026916611 0.029795993 3.43E-08 7.464254482 -0.182211618 EPS(ph)PALGPNLDGSGLLPR ddPTM_HeLa_CUDC101_4h_R1 2 EPSPALGPNLDGSGLLPR 18 0 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 1 0 EPS(1)PALGPNLDGSGLLPR;EPS(1)PALGPNLDGSGLLPR ; 164.69 1.23E-05 97232000 1688.64 1346.5 1250.33 1394.12 1163.01 1274.03 1015.98 1376.91 1534.2 1704.09 TRUE FALSE FALSE 1490.700179 1387.984069 1317.926622 1450.97824 1077.217069 1249.73 1055.166689 1533.651869 1470.959627 1693.953997 0.880012197 0.819375303 0.778017953 0.856562954 0.635918727 0.737759114 0.62290162 0.905368075 0.868358662 1 10.72617898 -7.463711386 0.492674101 0.992081398 0.721326421 0.381005643 0.088771149 0.383711719 0.229689187 0.033721683 0.033325458 3.44E-08 7.463711386 -0.270754977 MFY(ph)AGAAFS(ph)DFLQRS(ph)SRDLSK ddPTM_HeLa_CUDC101_4h_R1 1 MFYAGAAFSDFLQRSSRDLSK 21 2 E9PFX6;A0A087WV00;E7EM72;E7EWQ4;O75912 E9PFX6 DGKI Diacylglycerol kinase;Diacylglycerol kinase iota 3 0 MFY(0.999)AGAAFS(0.995)DFLQRS(0.482)S(0.483)RDLS(0.041)K 45.221 0.0033583 0 1595.7 1100.4 1121.1 1242.2 1533 1456.9 1184.1 1163.7 1165.7 1423.8 TRUE FALSE FALSE 1408.654465 1134.30202 1181.710057 1292.862285 1419.913644 1429.11206 1229.771134 1296.170904 1117.649353 1415.331174 0.995282582 0.801439296 0.83493537 0.9134698 1.003237737 1.009736863 0.868892847 0.9158075 0.78967338 1 10.46692395 -7.462432765 24.99917866 0.997918999 0.909626839 0 0.090083945 231.8985633 95908.62144 0.011274176 0.012890475 3.45E-08 7.462432765 -0.088292159 KDDVS(ph)PVMQFSSK ddPTM_HeLa_CUDC101_4h_R1 1 KDDVSPVMQFSSK 13 1 Q8IZE3-2;Q8IZE3 Q8IZE3-2 SCYL3 Protein-associating with the carboxyl-terminal domain of ezrin 1 0 KDDVS(1)PVMQFSSK 62.94 0.037726 13019000 1804.1 1241.9 1328.1 1282 1702.9 1756.6 1220.2 1291.1 1417.4 1694.9 TRUE FALSE FALSE 1592.626133 1280.161467 1399.901103 1334.285501 1577.28046 1723.095782 1267.263523 1438.073605 1358.974172 1684.818659 0.945280445 0.759821515 0.830891263 0.791946061 0.936172241 1.022718838 0.752166125 0.853548005 0.806599668 1 10.7183776 -7.462386427 6.401819891 0.976278078 0.852525953 0.000387089 0.093899435 0.1944886 15.7916627 0.013799235 0.015561277 3.45E-08 7.462386427 -0.123752126 ESHT(ph)PVSIQEEIVGDFK ddPTM_HeLa_CUDC101_4h_R1 2 ESHTPVSIQEEIVGDFK 17 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;A0A0A0MR81;F5H176 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 ES(0.144)HT(0.855)PVS(0.001)IQEEIVGDFK;ES(0.153)HT(0.846)PVSIQEEIVGDFK ; 128.74 0.00037834 14027200 8696 6446.5 6905.1 7125.6 7180.6 8193.8 7194.4 5740.8 7971.4 7884.4 TRUE FALSE FALSE 7676.668062 6645.109024 7278.410593 7416.212767 6650.901444 8037.516917 7471.890418 6394.309467 7642.815518 7837.503238 0.979478774 0.84786045 0.928664445 0.946246852 0.848599515 1.025520076 0.953350856 0.81586052 0.975159472 1 12.93617842 -7.462359746 12.26793071 0.990956663 0.915269381 0.25686295 0.058263858 1.270751636 256.5990721 0.00948985 0.010820846 3.45E-08 7.462359746 -0.075687281 NTADHDES(ph)PPRT(ph)PTGNAPSSESDIDISSPNVSHDESIAK ddPTM_HeLa_CUDC101_4h_R1 1 NTADHDESPPRTPTGNAPSSESDIDISSPNVSHDESIAK 39 1 O95251-4;O95251 O95251-4 KAT7 Histone acetyltransferase KAT7 2 0 NT(0.006)ADHDES(0.329)PPRT(0.329)PT(0.329)GNAPS(0.33)S(0.33)ES(0.33)DIDIS(0.012)S(0.004)PNVS(0.001)HDESIAK 51.878 0.0036421 19548000 2224.7 1332.9 1213.7 1489.7 2185.1 1924.5 1783.8 1547.5 2340.1 2100.7 TRUE FALSE FALSE 1963.924038 1373.965069 1279.316293 1550.456405 2023.909526 1887.793369 1852.601764 1723.661145 2243.640088 2088.204943 0.940484336 0.657964667 0.612639242 0.742482873 0.969210198 0.904026865 0.887174302 0.825427193 1.074434813 1 11.02804759 -7.461810702 9.724419478 0.973838402 0.803834455 0.424498913 0.108260832 0.472240175 73.25395753 0.019933654 0.022672999 3.45E-08 7.461810702 -0.170003947 KNSSQSLMVPQSGS(ph)PEPESIR ddPTM_HeLa_CUDC101_4h_R1 1 KNSSQSLMVPQSGSPEPESIR 21 1 F5H1U9;O75970-5;O75970-3;O75970-2;O75970;B7ZB24;H0YGQ3;A0A075B6R8 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 KNSSQSLMVPQS(0.127)GS(0.859)PEPES(0.014)IR 84.646 0.0006532 6976900 1313.9 1258.7 1386.6 1061.9 1136.3 1306.3 1213.9 1018.7 1342.2 1127.7 TRUE FALSE FALSE 1159.886634 1297.479055 1461.56379 1105.208872 1052.477413 1281.384504 1260.72053 1134.66469 1286.873948 1120.99239 1.03469626 1.157437879 1.30381241 0.985920049 0.938880069 1.143080466 1.124646822 1.012196604 1.147977416 1 10.13056077 -7.460234168 6.726227723 1.0150826 1.09615947 0 0.105702804 0.392328272 34.08084858 0.017302918 0.019552546 3.47E-08 7.460234168 0.081076871 EGETQGVAFEHESPADFQNS(ph)QSPVQDQDK ddPTM_HeLa_CUDC101_4h_R1 1 EGETQGVAFEHESPADFQNSQSPVQDQDK 29 0 E9PGM9;P78332;F8WCA5;P78332-3 E9PGM9 RBM6 RNA-binding protein 6 1 0 EGETQGVAFEHES(0.004)PADFQNS(0.498)QS(0.498)PVQDQDK 104.03 1.33E-09 5445300 1163.2 623 519.13 758.75 1327.1 1105.7 972.08 482.8 1205.9 1041.5 TRUE FALSE FALSE 1026.851459 642.1938916 547.1957381 789.6951046 1229.202477 1084.610615 1009.573451 537.7600005 1156.192292 1035.305112 0.991834627 0.620294331 0.528535725 0.762765581 1.187285239 1.047624128 0.975145819 0.519421757 1.116764786 1 10.01584029 -7.460129628 24.98985694 0.996398054 0.822739293 0.190679323 0.210792288 356.8704902 142124.1764 0.037646867 0.043046779 3.47E-08 7.460129628 -0.173658761 SS(ph)GFISELPSEEGK ddPTM_HeLa_CUDC101_4h_R1 2 SSGFISELPSEEGK 14 0 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 S(0.227)S(0.773)GFISELPSEEGK;S(0.045)S(0.955)GFISELPSEEGK ; 269.05 9.16E-86 63836000 7111.5 7079 6627.8 7045.7 7989 7609.5 5927.8 4031.5 5930.1 6012 TRUE FALSE FALSE 6277.90075 7297.095599 6986.118916 7333.0541 7399.667386 7464.361466 6156.437232 4490.429664 5685.658768 5976.240357 1.050476617 1.221017758 1.168982253 1.227034668 1.238181021 1.249006235 1.030152213 0.751380366 0.951377192 1 12.54502246 -7.459861213 6.164169311 1.021841969 1.137614585 0.13466751 0.143065701 0.371659316 27.14501424 0.02509882 0.028303573 3.47E-08 7.459861213 0.115772616 GDS(ph)PELKPR ddPTM_HeLa_CUDC101_4h_R1 1 GDSPELKPR 9 1 H0Y3A3;A0A3B3ITG3;Q5VWQ8-3;Q5VWQ8-4;Q5VWQ8-2;Q5VWQ8-5;Q5VWQ8 H0Y3A3 DAB2IP Disabled homolog 2-interacting protein 1 0 GDS(1)PELKPR 87.667 0.017951 42544000 4350.1 2964.3 2947.6 3710.9 3007 3658.6 3494.4 3203.4 3589.3 4146.2 TRUE FALSE FALSE 3840.187872 3055.626569 3106.956172 3862.246542 2785.179601 3588.818301 3629.180179 3568.062107 3441.347535 4121.538218 0.931736568 0.741380137 0.753834129 0.937088615 0.675762168 0.870747306 0.880540222 0.865711275 0.83496679 1 12.00896716 -7.45928683 4.378332641 0.971243736 0.819037524 0.186879601 0.085545553 0.140993948 5.071816119 0.012915919 0.014431822 3.47E-08 7.45928683 -0.152206212 KPVTVSPTT(ph)PTSPTEGEAS ddPTM_HeLa_CUDC101_4h_R1 1 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 KPVTVS(0.004)PT(0.024)T(0.772)PT(0.189)S(0.005)PT(0.005)EGEAS(0.001) 89.484 0.017356 34551000 1682.3 1770.3 1263.7 1839.7 1665.3 1598.5 1618.6 1587.6 1298.3 1438.6 TRUE FALSE FALSE 1485.103344 1824.840845 1332.019444 1914.730918 1542.454137 1568.011276 1681.029944 1768.325967 1244.783524 1430.043143 1.038502475 1.27607398 0.931454027 1.338932274 1.078606715 1.096478301 1.17550995 1.236554278 0.870451728 1 10.48184296 -7.4589595 11.3341678 1.016957251 1.1549242 0.34225666 0.116856506 0.837696534 147.2462834 0.016589026 0.018917165 3.48E-08 7.4589595 0.137966949 GSSDGRGS(ph)DSESDLPHR ddPTM_HeLa_CUDC101_4h_R1 2 GSSDGRGSDSESDLPHR 17 1 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 GSSDGRGS(0.7)DS(0.262)ES(0.038)DLPHR;GSSDGRGS(0.428)DS(0.428)ES(0.143)DLPHR ; 80.362 0.0068641 97280000 6062 3952.2 4053 4351 5748.1 4512.1 4511.2 4444.2 5762.3 5823.1 TRUE FALSE FALSE 5351.421549 4073.962597 4272.11744 4528.452587 5324.074115 4426.03921 4685.198495 4950.109764 5524.775555 5788.463942 0.924497691 0.7038072 0.738039916 0.78232371 0.919773219 0.764631041 0.809402726 0.855168109 0.954445879 1 12.49896484 -7.457137429 4.686104883 0.967971359 0.797449343 0.630480277 0.058003409 0.105672408 4.315688715 0.010939447 0.012254687 3.49E-08 7.457137429 -0.170522016 S(ph)TCGDSEVEEESPGKR ddPTM_HeLa_CUDC101_4h_R1 1 STCGDSEVEEESPGKR 16 1 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 1 0 S(0.932)T(0.068)CGDSEVEEESPGKR 64.89 0.024069 7701800 1949.7 1842.5 2014.8 1713.6 1953.6 2096.9 1679.2 1543.5 2268.2 1627.1 TRUE FALSE FALSE 1721.159122 1899.265241 2123.726182 1783.488015 1809.48682 2056.905126 1743.967306 1719.205801 2174.703836 1617.421937 1.064137367 1.174254657 1.313031643 1.102673319 1.118747544 1.271718331 1.078238935 1.062929692 1.344549487 1 10.65948037 -7.454434913 2.73279424 1.025459614 1.163077099 0 0.12660993 0.203852456 2.91982257 0.014288132 0.015841097 3.51E-08 7.454434913 0.137617485 AEDS(ph)DS(ph)EPEPEDNVR ddPTM_HeLa_CUDC101_4h_R1 2 AEDSDSEPEPEDNVR 15 0 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 2 0 AEDS(1)DS(1)EPEPEDNVR;AEDS(1)DS(1)EPEPEDNVR ; 147.07 0.00274 28157000 6354.2 5153.8 5104.2 4683.3 5695.7 5272.5 5404.6 4920.1 5795.3 5841.2 TRUE FALSE FALSE 5609.370308 5312.582469 5380.148491 4874.305217 5275.539558 5171.935847 5613.057232 5480.184296 5556.415281 5806.456283 0.966057443 0.914944023 0.926580384 0.839463001 0.908564415 0.890721568 0.966692413 0.943808759 0.956937418 1 12.50344223 -7.454418244 1.44051148 0.98886833 0.910177515 0.399161417 0.033681875 0.223885076 0.91260122 0.006891569 0.007553245 3.51E-08 7.454418244 -0.078690815 VDEDSAEDTQS(ph)NDGKEVVEVGQK ddPTM_HeLa_CUDC101_4h_R1 1 VDEDSAEDTQSNDGKEVVEVGQK 23 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 VDEDS(0.006)AEDT(0.123)QS(0.87)NDGKEVVEVGQK 102.43 2.99E-05 22299000 3931.4 2867.1 3310.9 2791.2 2897.5 2883 2917.8 2738.1 3066.1 3877.7 TRUE FALSE FALSE 3470.567252 2955.431953 3489.897269 2905.037201 2683.757198 2828.011578 3030.340523 3049.794236 2939.71406 3854.635268 0.900362034 0.766721557 0.905376781 0.753647751 0.696241541 0.733665154 0.786154931 0.791201767 0.762643896 1 11.91237864 -7.45328355 0.557757701 0.990223323 0.747676755 0.073690412 0.086267718 0.244822921 0.177523792 0.018914444 0.019172502 3.52E-08 7.45328355 -0.242546568 TAIT(ph)TPNFK ddPTM_HeLa_CUDC101_4h_R1 2 TAITTPNFK 9 0 Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6;Q9BXS6-7;H0YMD2 Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 TAIT(0.659)T(0.341)PNFK;T(0.001)AIT(0.499)T(0.499)PNFK ; 139.38 0.0093961 127723000 12184.7 11760.6 12121.2 11820.4 12392.5 10753 7810 2439.77 11081.9 13590.9 TRUE FALSE FALSE 10756.42794 12122.93015 12776.50874 12302.487 11478.32996 10547.90444 8111.234316 2717.503555 10625.09939 13510.06072 0.796179096 0.897326104 0.94570328 0.910616707 0.849613499 0.780744414 0.600384742 0.201146657 0.7864583 1 13.72174654 -4.351983362 1.297423379 0.902917526 2.37E-15 0.917123124 0.063010663 0.272021692 0.438080817 0.011397707 0.309635477 4.45E-05 4.351983362 -0.902917526 down TDNSSLSS(ph)PLNPK ddPTM_HeLa_CUDC101_4h_R1 1 TDNSSLSSPLNPK 13 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 TDNSSLS(0.226)S(0.774)PLNPK 170.26 4.88E-07 42434000 3381 2999.7 3348.7 3270.7 3087.3 3651.6 2319.2 830.16 3657.3 3962.8 TRUE FALSE FALSE 2984.684305 3092.117201 3529.740851 3404.093283 2859.55603 3581.951814 2408.652321 924.6620588 3506.544546 3939.229089 0.757682338 0.784954906 0.896048636 0.864152149 0.725917677 0.909302742 0.611452715 0.23473173 0.890160096 1 11.94369761 -4.350919545 1.979255712 0.866561197 0.110695046 0.851252882 0.079546768 0.210785542 1.007131621 0.014902835 0.268894478 4.46E-05 4.350919545 -0.755866151 down ITPLSLQT(ph)QGSSHETLNIVEEK ddPTM_HeLa_CUDC101_4h_R1 1 ITPLSLQTQGSSHETLNIVEEK 22 0 O43491;Q6R5J7;E9PMV8 O43491 EPB41L2 Band 4.1-like protein 2 1 0 IT(0.003)PLS(0.084)LQT(0.372)QGS(0.204)S(0.169)HET(0.169)LNIVEEK 54.672 0.035979 6402900 1857 1085.9 645.6 849.69 2398.7 1619.8 1466.2 1279.4 1497.8 1807.8 TRUE FALSE FALSE 1639.325275 1119.355292 680.5030888 884.3440309 2221.75268 1588.905014 1522.751825 1425.041724 1436.06005 1797.047125 0.912232769 0.622885887 0.378678488 0.492109538 1.236335235 0.884175485 0.847363324 0.792990737 0.799122088 1 10.81141253 -7.452248394 5.582099991 0.962213385 0.75382837 0.074056653 0.226882092 0.333033169 18.55412478 0.041368984 0.046642022 3.53E-08 7.452248394 -0.208385016 RPISDDDCPS(ph)ASK ddPTM_HeLa_CUDC101_4h_R1 1 RPISDDDCPSASK 13 1 Q96PU4 Q96PU4 UHRF2 E3 ubiquitin-protein ligase UHRF2 1 0 RPIS(0.024)DDDCPS(0.972)AS(0.003)K 111.07 0.0089111 25505000 2953.9 3230.3 3052.8 2614.2 2945.9 2749.2 2888.7 2302.1 3106.5 2615.2 TRUE FALSE FALSE 2607.64832 3329.821714 3217.843602 2720.818376 2728.586826 2696.76359 3000.118127 2564.161759 2978.448755 2599.644674 1.003078746 1.280875709 1.237801317 1.04661164 1.049599914 1.037358535 1.154049304 0.986350859 1.145713791 1 11.34409873 -7.450890962 24.99999918 1.001356351 1.113832823 0.015544829 0.098221338 150.6392601 52314.00397 0.015196259 0.017377355 3.54E-08 7.450890962 0.112476472 RLDSDAVNTIESQS(ph)VSPDHNKEPK ddPTM_HeLa_CUDC101_4h_R1 1 RLDSDAVNTIESQSVSPDHNKEPK 24 2 Q3T7B4;Q9H3H1-6;Q9H3H1-3;Q9H3H1-2;Q9H3H1-5;Q9H3H1-4;Q9H3H1 Q3T7B4 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" 1 0 RLDSDAVNTIES(0.007)QS(0.497)VS(0.497)PDHNKEPK 70.452 0.00031364 27027000 2518 1951.5 1786.6 2003.9 2367.2 2119.7 2085.3 2186.9 2453.1 2288.3 TRUE FALSE FALSE 2222.843857 2011.623402 1883.189 2085.627704 2192.576372 2079.270254 2165.73072 2435.847856 2351.98218 2274.68909 0.977207772 0.884350926 0.827888527 0.916884735 0.963901564 0.91408987 0.952099665 1.070848701 1.033979628 1 11.15145365 -7.449860702 7.06146541 0.990062556 0.929342802 0.216148941 0.060393783 0.340829593 28.09779381 0.01041982 0.011823222 3.55E-08 7.449860702 -0.060719754 S(ph)TPEHTWSSR ddPTM_HeLa_CUDC101_4h_R1 1 STPEHTWSSR 10 0 O14646-2;O14646 O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 S(0.916)T(0.084)PEHTWSSR 107.11 0.0094681 9347600 3105 1731.6 1892.4 1897.8 2691.1 2912.6 2195.4 1920.8 2602.9 3006.3 TRUE FALSE FALSE 2741.036607 1784.948544 1994.708868 1975.200487 2492.582914 2857.047008 2280.077313 2139.456108 2495.60736 2988.418394 0.917219829 0.597288702 0.667479785 0.66095179 0.834080971 0.956039828 0.762971249 0.715915854 0.835093026 1 11.54516643 -7.447985866 6.509785494 0.964031901 0.748469308 0.3590946 0.103341413 0.154548905 10.88044836 0.018155379 0.020572471 3.56E-08 7.447985866 -0.215562593 LHQLAMQQSHFPMTHGNTGFSGIES(ph)SSPEVK ddPTM_HeLa_CUDC101_4h_R1 1 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK 31 0 Q15366-2;Q15366;Q15366-3;Q15366-6;Q15366-5;Q15366-4;F8VRH0;H3BRU6;F8VZX2 Q15366-2;H3BRU6 PCBP2 Poly(rC)-binding protein 2 1 0 LHQLAMQQSHFPMTHGNT(0.003)GFS(0.013)GIES(0.761)S(0.134)S(0.09)PEVK 117.61 5.63E-12 82731000 3030.8 1596.4 1348.1 1490.4 3597.6 2940.7 2781.5 1509 2691.6 2700.9 TRUE FALSE FALSE 2675.534218 1645.583192 1420.982364 1551.184954 3332.212215 2884.611047 2888.783387 1680.77846 2580.651109 2684.834927 0.996535836 0.612917828 0.52926247 0.577758036 1.241123684 1.074409089 1.075963128 0.626026741 0.961195447 1 11.39061767 -7.446331988 24.99902487 0.998474972 0.832869566 0.095484042 0.231067354 232.697524 75994.82957 0.042267241 0.048334627 3.58E-08 7.446331988 -0.165605407 ESLCDS(ph)PHQNLSR ddPTM_HeLa_CUDC101_4h_R1 3 ESLCDSPHQNLSR 13 0 O15042-2;O15042;E7ET15;E7EW00;H0Y8D9;C9J5L1;U3KPT1;C9JDJ7 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 0 ES(0.002)LCDS(0.998)PHQNLSR;ESLCDS(1)PHQNLSR;ES(0.264)LCDS(0.736)PHQNLSR ;; 192.54 5.29E-12 8451700 9542.1 6951.2 6721.4 6714.7 8093.7 8127.8 7281.4 5441.08 8660.5 9155.9 TRUE FALSE FALSE 8423.589503 7165.358233 7084.779215 6988.554489 7496.643876 7972.775757 7562.246037 6060.470554 8303.510524 9101.4403 0.925522689 0.787277398 0.778423962 0.767851489 0.823676652 0.875990557 0.83088454 0.665880383 0.912329285 1 13.15187915 -7.445567786 1.936630968 0.972950941 0.79357073 0.604946761 0.056840134 0.135308851 0.985926948 0.010664515 0.011809403 3.58E-08 7.445567786 -0.179380211 DKEDPQEMPHS(ph)PLGSMPEIR ddPTM_HeLa_CUDC101_4h_R1 3 DKEDPQEMPHSPLGSMPEIR 20 1 G5E9C0;Q9HB58-5;Q9HB58-3;Q9HB58-7;Q9HB58;Q9HB58-6;Q9HB58-2 G5E9C0 SP110 Sp110 nuclear body protein 1 0 DKEDPQEMPHS(0.988)PLGS(0.012)MPEIR;DKEDPQEMPHS(0.991)PLGS(0.009)MPEIR;DKEDPQEMPHS(0.898)PLGS(0.102)MPEIR ;; 101.86 0.00033523 40204000 15319 11411.8 11479.5 10787.28 14434.2 14469.8 12877.2 10763.9 13553 13949.3 TRUE FALSE FALSE 13523.33004 11763.38403 12100.11649 11227.23191 13369.41782 14193.81267 13373.87792 11989.21887 12994.3396 13866.32894 0.9752639 0.848341625 0.872625808 0.809675867 0.964164191 1.02361719 0.96448584 0.864628188 0.937114622 1 13.75929827 -7.445429972 8.238724624 0.989158413 0.910583633 0.164552789 0.062442684 0.358276256 35.04364817 0.011175654 0.01272517 3.59E-08 7.445429972 -0.07857478 VQVAALQAS(ph)PPLDQDDR ddPTM_HeLa_CUDC101_4h_R1 2 VQVAALQASPPLDQDDR 17 0 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IU26;B1AN86;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 VQVAALQAS(1)PPLDQDDR;VQVAALQAS(1)PPLDQDDR ; 140.16 0.00020143 30160400 2514.17 1719.22 2081.13 1791.74 1529.31 1990.16 1864.87 1754.12 2317 2433.5 TRUE FALSE FALSE 2219.462804 1772.18713 2193.642183 1864.814902 1416.495848 1952.201014 1936.798661 1953.80193 2221.492279 2419.025434 0.917502881 0.732603761 0.906828904 0.77089512 0.585564678 0.807019631 0.800652458 0.807681434 0.918341845 1 11.24021022 -7.444959965 0.823366407 0.983203094 0.758824152 0.47014307 0.081252575 0.277921637 0.390873429 0.020363885 0.02171112 3.59E-08 7.444959965 -0.224378942 AES(ph)PESSAIESTQST(ph)PQKGR ddPTM_HeLa_CUDC101_4h_R1 2 AESPESSAIESTQSTPQKGR 20 1 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 0 AES(0.901)PES(0.044)S(0.055)AIES(0.001)T(0.03)QS(0.264)T(0.705)PQKGR;AES(0.461)PES(0.244)S(0.295)AIES(0.009)T(0.016)QS(0.133)T(0.842)PQKGR ; 122.84 3.39E-05 61234000 6229.3 6376 5358.3 6159.1 7670 6117.6 6410.7 4554.6 5171 5128.7 TRUE FALSE FALSE 5499.110897 6572.437003 5647.985906 6410.29472 7104.199381 6000.916973 6657.962846 5073.077254 4957.849191 5098.194264 1.078638948 1.289169589 1.107840465 1.257365724 1.393473652 1.177067146 1.305945302 0.995073352 0.972471611 1 12.31577063 -7.444574262 3.316512725 1.032012483 1.223804873 0.424992915 0.107110319 0.172636146 3.532307394 0.018059181 0.020141863 3.59E-08 7.444574262 0.19179239 RIS(ph)FSASHR ddPTM_HeLa_CUDC101_4h_R1 2 RISFSASHR 9 1 E9PKY8;E9PJM0;Q03393 E9PKY8 PTS 6-pyruvoyl tetrahydrobiopterin synthase 1 0 RIS(0.992)FS(0.008)AS(0.001)HR;RIS(0.98)FS(0.019)ASHR ; 71.806 0.033286 18160900 2178.55 1517.23 1195.45 1587.11 2228.6 2052.3 1728.15 1625.69 2001.34 1999.39 TRUE FALSE FALSE 1923.183671 1563.974058 1260.079643 1651.839206 2064.200618 2013.155797 1794.805324 1810.751978 1918.843918 1987.497539 0.967640781 0.786906161 0.634003121 0.831115095 1.038592792 1.012909831 0.903047822 0.911071306 0.965457255 1 10.95673736 -7.44429258 8.653679702 0.985800153 0.875776517 0.163407656 0.107828606 0.517039424 53.19859292 0.020512898 0.023375572 3.60E-08 7.44429258 -0.110023636 RVPS(ph)PTPAPK ddPTM_HeLa_CUDC101_4h_R1 6 RVPSPTPAPK 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RVPS(0.993)PT(0.007)PAPK;RVPS(0.991)PT(0.009)PAPK;RVPS(0.986)PT(0.014)PAPK;RVPS(0.986)PT(0.014)PAPK;RVPS(0.993)PT(0.007)PAPK;RVPS(0.974)PT(0.026)PAPK ;;;;; 142.89 0.0019987 4205039000 52643.3 48083.8 49079.3 49897 48268.6 46115.8 44992.2 49208.8 49271.1 45210.5 TRUE FALSE FALSE 46472.53218 49565.20488 51732.67541 51932.01533 44707.92154 45236.21795 46727.56423 54810.53088 47240.1244 44941.58594 1.034065247 1.102880636 1.151109253 1.155544787 0.994800709 1.006555888 1.039739993 1.219594942 1.051145023 1 15.45576342 -7.444251064 3.012082916 1.013756016 1.090546283 0.164800221 0.067276192 0.306891985 5.249063527 0.012400803 0.013811639 3.60E-08 7.444251064 0.076790267 WKGYT(ph)SDDDTWEPEIHLEDCK ddPTM_HeLa_CUDC101_4h_R1 2 WKGYTSDDDTWEPEIHLEDCK 21 1 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 WKGY(0.26)T(0.355)S(0.299)DDDT(0.086)WEPEIHLEDCK;WKGY(0.275)T(0.34)S(0.34)DDDT(0.046)WEPEIHLEDCK ; 63.392 0.0076443 34140000 6479.4 6644.5 5775.2 6173 6083.3 6493.8 5912.9 6077.6 5457.1 5604.9 TRUE FALSE FALSE 5719.894554 6849.209169 6087.424781 6424.761622 5634.547079 6369.941584 6140.962534 6769.449417 5232.156028 5571.561806 1.02662319 1.229315838 1.092588576 1.153134767 1.011304779 1.143295508 1.102197687 1.215000327 0.939082471 1 12.44386608 -7.443147718 10.34166785 1.011716427 1.128641438 0.523522493 0.062919406 0.352266335 44.42161647 0.009415754 0.010749293 3.60E-08 7.443147718 0.11692501 LASLGDTAS(ph)PLVK ddPTM_HeLa_CUDC101_4h_R1 1 LASLGDTASPLVK 13 0 Q6P4F7-3;Q6P4F7 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 LASLGDT(0.039)AS(0.961)PLVK 192.14 8.02E-12 29554000 1994.7 1777.4 1617.3 1745.7 1828.3 1370.8 1240.2 353.6 1943.8 1859.2 TRUE FALSE FALSE 1760.88429 1832.159587 1704.73613 1816.897192 1693.429951 1344.654274 1288.034929 393.8523947 1863.675741 1848.141396 0.952786564 0.991352497 0.922405685 0.983094257 0.916288091 0.727571103 0.696935274 0.213107285 1.008405388 1 10.85185942 -4.350263633 1.025487577 0.974067747 1.46E-17 0.94446003 0.055207151 0.234858211 0.211017781 0.007629465 0.240946981 4.46E-05 4.350263633 -0.974067747 down EEGAQTLEEDRAQT(ph)PHEDGGPQPHR ddPTM_HeLa_CUDC101_4h_R1 2 EEGAQTLEEDRAQTPHEDGGPQPHR 25 1 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 1 0 EEGAQT(0.422)LEEDRAQT(0.578)PHEDGGPQPHR;EEGAQT(0.351)LEEDRAQT(0.649)PHEDGGPQPHR ; 49.593 0.013998 33956000 4940.6 4659.5 4839.2 4507.7 4738.1 3947.5 4725 4265.6 4328.7 4240.5 TRUE FALSE FALSE 4361.470357 4803.053672 5100.82179 4691.54349 4388.579803 3872.208014 4907.244833 4751.178662 4150.269154 4215.277317 1.034681713 1.139439546 1.210079766 1.112985727 1.04111295 0.918612875 1.164157056 1.127133117 0.984577963 1 12.04141183 -7.440602676 4.707600819 1.014774524 1.099389559 0.254516274 0.075028182 0.276073555 10.45331991 0.013837052 0.01557469 3.63E-08 7.440602676 0.084615035 SGEQIT(ph)SSPVSPK ddPTM_HeLa_CUDC101_4h_R1 1 SGEQITSSPVSPK 13 0 A0A087WZV0;O43314-2;O43314;A0A087WWN8 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 S(0.016)GEQIT(0.51)S(0.43)S(0.044)PVSPK 154.23 0.00077696 23558000 5133.7 3993.3 4123.3 3922.7 4278.9 4274.9 4084.1 4894.8 4541.8 4657.6 TRUE FALSE FALSE 4531.935468 4116.32884 4346.21807 4082.684661 3963.254072 4193.363405 4241.625105 5452.004247 4354.585082 4629.896388 0.97884166 0.889075801 0.938729014 0.881809077 0.856013556 0.905714308 0.916138235 1.177565066 0.940536184 1 12.17676419 -7.439698884 6.587250189 0.990793961 0.930505253 0.018917507 0.086129366 0.437523237 28.66690279 0.014119439 0.016027893 3.63E-08 7.439698884 -0.060288708 SSTFPQTDVLSSS(ph)LEAEHR ddPTM_HeLa_CUDC101_4h_R1 1 SSTFPQTDVLSSSLEAEHR 19 0 D4PHA4;Q86WP2-4;Q86WP2-3;Q86WP2;Q86WP2-2 D4PHA4 GPBP1 Vasculin 1 0 SSTFPQTDVLS(0.022)S(0.23)S(0.748)LEAEHR 144.58 3.46E-05 49846000 3352.8 2553.6 2555.1 2418.6 3097.8 2946.9 2862.7 2496.9 2925.6 3072.2 TRUE FALSE FALSE 2959.789867 2632.273389 2693.236435 2517.240962 2869.281466 2890.692792 2973.115298 2781.137003 2805.00553 3053.926418 0.969175239 0.861930849 0.881893034 0.82426379 0.939538507 0.946549588 0.973538616 0.910675839 0.918491524 1 11.57644959 -7.438806559 5.359479195 0.986740097 0.907011125 0.199186586 0.046311433 0.166882418 7.787358908 0.007820759 0.008836669 3.64E-08 7.438806559 -0.079728971 DSLGDFIEHYAQLGPS(ph)SPEQLAAGAEEGGGPR ddPTM_HeLa_CUDC101_4h_R1 2 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPR 32 0 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 DSLGDFIEHYAQLGPS(0.599)S(0.401)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.609)S(0.391)PEQLAAGAEEGGGPR ; 88.346 3.26E-08 240380000 4189.6 2990.7 3023.7 3411.4 3563.1 3767.8 3203.7 2996.6 3910.9 3865.2 TRUE FALSE FALSE 3698.501439 3082.839922 3187.170368 3550.531637 3300.257212 3695.935493 3327.267782 3337.720831 3749.691047 3842.209619 0.962597517 0.802361201 0.829514963 0.924085875 0.858947725 0.961929686 0.865977683 0.868698266 0.975920478 1 11.90772051 -7.438656323 6.589845821 0.9837247 0.875951728 0.571416495 0.042513554 0.130391685 8.455918405 0.007515618 0.008532858 3.64E-08 7.438656323 -0.107772972 PAPPPQSQS(ph)PEVEQLGR ddPTM_HeLa_CUDC101_4h_R1 1 PAPPPQSQSPEVEQLGR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 PAPPPQS(0.048)QS(0.952)PEVEQLGR 142.84 0.00018515 22420000 413.5 286.99 264.86 278.83 282.92 295.02 308.65 134.77 387.57 439.66 TRUE FALSE FALSE 365.0301568 295.8318217 279.1791328 290.2018926 262.0495553 289.392985 320.5547339 150.111672 371.5942006 437.0448828 0.8352235 0.676891169 0.638788243 0.664009359 0.599594151 0.662158502 0.733459529 0.343469694 0.850242653 1 8.771637636 -7.438389356 0.325823441 1.043323091 0.522735124 0.610386294 0.10373206 0.467451951 0.156833145 0.085790274 0.083330215 3.64E-08 7.438389356 -0.520587968 T(ph)RSRS(ph)PESQVIGENTK ddPTM_HeLa_CUDC101_4h_R1 1 TRSRSPESQVIGENTK 16 2 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 2 0 T(0.876)RS(0.361)RS(0.762)PES(0.001)QVIGENTK 75.445 0.029433 49925000 4713.2 3565.3 3493.6 3967.7 3984 3465.3 3617.8 4748.7 4024.4 4285.3 TRUE FALSE FALSE 4160.725841 3675.142667 3682.474584 4129.519956 3690.108257 3399.205176 3757.339758 5289.272813 3858.512529 4259.810845 0.976739577 0.862747854 0.864469038 0.969413926 0.86626106 0.797970919 0.882043803 1.24166847 0.905794334 1 12.05657365 -7.438350202 7.349016715 0.989835029 0.916663477 0 0.117915572 0.541607193 41.17532508 0.018998636 0.02161373 3.64E-08 7.438350202 -0.073171552 VKPAS(ph)PVAQPK ddPTM_HeLa_CUDC101_4h_R1 2 VKPASPVAQPK 11 1 Q96EV2;H0Y3K4 Q96EV2 RBM33 RNA-binding protein 33 1 0 VKPAS(1)PVAQPK;VKPAS(1)PVAQPK ; 69.331 0.034679 1281670000 19963.7 19424.5 19707.3 19220.3 18021.5 16399.5 17501 18801.7 17485.5 17432.1 TRUE FALSE FALSE 17623.58535 20022.94582 20772.73625 20004.18691 16692.08985 16086.70686 18176.01943 20942.00953 16764.74029 17328.41309 1.017034004 1.155497951 1.198767373 1.154415399 0.96327862 0.928342761 1.04891425 1.208535912 0.967471181 1 14.08085192 -7.437978948 10.0774208 1.007494837 1.087217211 0.199282108 0.089480186 0.796886238 91.07738902 0.01637351 0.018694039 3.65E-08 7.437978948 0.079722374 GSGGLFS(ph)PSTAHVPDGALGQR ddPTM_HeLa_CUDC101_4h_R1 1 GSGGLFSPSTAHVPDGALGQR 21 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 GS(0.028)GGLFS(0.722)PS(0.185)T(0.065)AHVPDGALGQR 151.63 5.27E-07 8518500 701.39 425.46 482.96 436.49 731.82 492.64 640.38 347.4 724.25 657.55 TRUE FALSE FALSE 619.1741274 438.5679183 509.0702785 454.2919489 677.8350966 483.2437128 665.0796711 386.9466118 694.3961085 653.6388634 0.947272511 0.670963651 0.778824986 0.695019795 1.03701774 0.739313006 1.017503255 0.59198838 1.062354379 1 9.352349954 -7.437089725 7.626237998 0.976930201 0.802245202 0.332738691 0.136659491 0.264631085 20.89149592 0.021152749 0.024081312 3.66E-08 7.437089725 -0.174684999 ADVDVS(ph)GPK ddPTM_HeLa_CUDC101_4h_R1 1 ADVDVSGPK 9 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ADVDVS(1)GPK 84.687 0.036164 3888900 1382.6 892.7 906.58 862.63 836.26 1150.6 1131.3 820.74 1343.1 1365.7 TRUE FALSE FALSE 1220.533724 920.2030289 955.5924571 897.81178 774.5707659 1128.654222 1174.93462 914.1697241 1287.73685 1357.576756 0.899053198 0.677827626 0.703895712 0.661334084 0.570553939 0.831374151 0.865464597 0.673383453 0.948555464 1 10.40681805 -7.436436119 2.584809122 0.96050852 0.7143677 0.638645376 0.082065865 0.135028008 1.721140775 0.016391084 0.018269763 3.66E-08 7.436436119 -0.24614082 TPPGALLGAPPPLVPAPRPS(ph)SPPR ddPTM_HeLa_CUDC101_4h_R1 1 TPPGALLGAPPPLVPAPRPSSPPR 24 1 J3KNZ9;Q9HAH7 J3KNZ9 FBRS Probable fibrosin-1 1 0 TPPGALLGAPPPLVPAPRPS(0.5)S(0.5)PPR 84.576 3.94E-05 21417000 712.8 806.21 785.36 841.84 678.26 838.04 476.51 575.91 808.69 613.11 TRUE FALSE FALSE 629.2466645 831.0483745 827.8189372 876.1738739 628.2261111 822.0557833 494.8891503 641.4692665 775.3554559 609.4631945 1.032460484 1.363574342 1.35827552 1.437615728 1.030785972 1.348819405 0.812008264 1.052515184 1.27219406 1 9.251395289 -7.434790405 10.86957637 1.014294565 1.199966958 0 0.199513621 0.807360832 96.73550331 0.031966898 0.036517355 3.67E-08 7.434790405 0.185672393 HIELGVTGGGS(ph)PENGDGALLAITPPAVK ddPTM_HeLa_CUDC101_4h_R1 2 HIELGVTGGGSPENGDGALLAITPPAVK 28 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 HIELGVT(0.069)GGGS(0.87)PENGDGALLAIT(0.061)PPAVK;HIELGVT(0.29)GGGS(0.709)PENGDGALLAITPPAVK ; 69.248 6.64E-05 30675000 4847.3 3745.7 3704.6 4232.3 4374.8 4312 4096.7 3367.6 4115.9 4306.7 TRUE FALSE FALSE 4279.106842 3861.100577 3904.881882 4404.911488 4052.07972 4229.755784 4254.711091 3750.953972 3946.24086 4281.083557 0.999538268 0.901897972 0.91212466 1.028924437 0.946507973 0.988010565 0.993839769 0.876169297 0.921785526 1 12.06376028 -7.434733842 24.99999632 0.999797748 0.954045144 0 0.050028222 84.44360216 23948.29208 0.007169699 0.008198846 3.68E-08 7.434733842 -0.045752605 RVS(ph)LSEIGFGK ddPTM_HeLa_CUDC101_4h_R1 2 RVSLSEIGFGK 11 1 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;H0YBX5 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 0 RVS(0.978)LS(0.022)EIGFGK;RVS(0.978)LS(0.022)EIGFGK ; 105.63 0.0044586 224100000 15579.4 15082.3 14195.1 13591.8 16363.8 16176.3 14893.2 9568.7 14151.1 13717.1 TRUE FALSE FALSE 13753.20635 15546.96779 14962.53004 14146.13235 15156.67508 15867.76403 15467.63571 10657.96213 13567.78567 13635.51008 1.0086316 1.14018234 1.097320889 1.037447977 1.111559083 1.16370887 1.13436429 0.781632815 0.995033232 1 13.73508105 -7.43451569 12.82990823 1.003805148 1.074739632 0.075015737 0.102475696 1.94934887 279.4449685 0.016542135 0.018908222 3.68E-08 7.43451569 0.070934484 EREES(ph)EDELEEANGNNPIDIEVDQNK ddPTM_HeLa_CUDC101_4h_R1 3 EREESEDELEEANGNNPIDIEVDQNK 26 1 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 EREES(1)EDELEEANGNNPIDIEVDQNK;EREES(1)EDELEEANGNNPIDIEVDQNK;EREES(1)EDELEEANGNNPIDIEVDQNK ;; 133.47 2.41E-11 432784400 7623.3 6536.8 5681.3 5529.14 6205.1 6404.5 5817.76 5901.42 6864.88 7356 TRUE FALSE FALSE 6729.70833 6738.19106 5988.448263 5754.642228 5747.362135 6282.344833 6042.152952 6573.213798 6581.906741 7312.246185 0.920333938 0.92149401 0.818961522 0.786986937 0.785991334 0.859153901 0.826306008 0.898932234 0.900121054 1 12.83609893 -7.434410399 0.828107744 0.980102515 0.827033216 0.51289023 0.045433435 0.209994171 0.298030139 0.010462331 0.011231542 3.68E-08 7.434410399 -0.153069298 SDSQTPS(ph)PNEIKTEQSLAGPK ddPTM_HeLa_CUDC101_4h_R1 1 SDSQTPSPNEIKTEQSLAGPK 21 1 Q9NYD6;D6RAG4;V9GYH0 Q9NYD6 HOXC10 Homeobox protein Hox-C10 1 0 S(0.003)DS(0.011)QT(0.331)PS(0.655)PNEIKTEQSLAGPK 86.179 0.00049459 0 806.46 689.5 606.23 607.88 769.5 412.82 712.49 827.74 565.21 755.91 TRUE FALSE FALSE 711.9279813 710.7426777 639.0046275 632.6719739 712.7355181 404.9461463 739.970978 921.9665758 541.9118046 751.4138137 0.947451282 0.945873851 0.850403088 0.841975437 0.948525972 0.5389123 0.984771593 1.226975814 0.721189569 1 9.553463828 -7.434302627 1.16559806 0.983277245 0.8880656 0 0.180106465 1.003806172 2.70040815 0.034302995 0.03762589 3.68E-08 7.434302627 -0.095211644 TVEDLKNNESQWKDS(ph)PLATR ddPTM_HeLa_CUDC101_4h_R1 1 TVEDLKNNESQWKDSPLATR 20 2 O95155;O95155-4;O95155-2;O95155-3;K7EP75 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 TVEDLKNNES(0.29)QWKDS(0.695)PLAT(0.014)R 43.035 0.039365 79988000 3288.6 3190.6 2796.5 3636.6 3467.2 3274.8 2853 3099.6 3027.6 2717.9 TRUE FALSE FALSE 2903.115293 3288.898604 2947.687249 3784.916267 3211.431564 3212.338646 2963.041166 3452.445935 2902.801047 2701.73381 1.07453787 1.217328884 1.091035408 1.400921235 1.1886558 1.188991541 1.096718394 1.277863098 1.074421557 1 11.39966982 -7.433557403 1.140436683 1.0213279 1.21305209 0.413446213 0.085920753 0.258340973 0.666403324 0.017639538 0.019335771 3.69E-08 7.433557403 0.191724189 TQTPPVSPAPQPT(ph)EERLPS(ph)SPVYEDAASFK ddPTM_HeLa_CUDC101_4h_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 2 0 T(0.022)QT(0.078)PPVS(0.129)PAPQPT(0.822)EERLPS(0.393)S(0.393)PVY(0.146)EDAAS(0.017)FK 55.012 0.007782 144970000 3538.5 3978.8 3289.9 3564.1 4080.5 3542.5 2969.5 3507.4 3712 3048.6 TRUE FALSE FALSE 3123.722394 4101.382112 3467.761945 3709.459403 3779.489645 3474.932715 3084.03461 3906.668239 3558.989789 3030.466792 1.030772686 1.353382958 1.144299603 1.224055454 1.247164184 1.146665829 1.017676425 1.289130853 1.174403164 1 11.56532432 -7.433553648 10.85789458 1.01355134 1.194140523 0.223926763 0.100011706 0.360079111 42.43370058 0.014101051 0.016108695 3.69E-08 7.433553648 0.180589183 QEAGDS(ph)PPPAPGT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 QEAGDSPPPAPGTPK 15 0 J3KR72;P49848-4;P49848-2;P49848;P49848-3 J3KR72 TAF6 Transcription initiation factor TFIID subunit 6 2 0 QEAGDS(1)PPPAPGT(1)PK;QEAGDS(1)PPPAPGT(1)PK ; 123.83 0.0030913 39607000 9616.7 7671.8 7496 7078.1 8109.9 7943.7 7724.9 7732.6 9112.1 8925.7 TRUE FALSE FALSE 8489.445004 7908.159065 7901.256434 7366.775512 7511.648834 7792.187158 8022.851981 8612.847928 8736.495381 8872.609539 0.956814899 0.891300246 0.890522275 0.830282847 0.846611 0.878229468 0.904226873 0.9707232 0.984659061 1 13.11514277 -7.432708242 1.482528255 0.985585199 0.882012997 0.587730684 0.035986867 0.190206468 0.816129802 0.007725823 0.008552088 3.69E-08 7.432708242 -0.103572202 HVRS(ph)SS(ph)MAS(ph)LRSPSTSIKSGLK ddPTM_HeLa_CUDC101_4h_R1 1 HVRSSSMASLRSPSTSIKSGLK 22 3 I3L4X5;Q70CQ4 I3L4X5 USP31 Ubiquitin carboxyl-terminal hydrolase 31 3 0 HVRS(0.781)S(0.383)S(0.828)MAS(0.689)LRS(0.039)PS(0.047)T(0.17)S(0.047)IKS(0.015)GLK 47.016 0.031462 9867100 1019.4 1349.1 1067.2 1107.8 1445.6 1236.7 1081.3 1031.8 1445.8 750.69 TRUE FALSE FALSE 899.9074773 1390.664172 1124.89606 1152.980872 1338.960968 1213.112008 1123.006103 1149.255941 1386.203512 746.2248625 1.20594679 1.863599354 1.507449184 1.545085041 1.794312995 1.625665492 1.504916493 1.540093341 1.857621719 1 9.543466618 -7.432127235 4.638988662 1.087686873 1.619329792 0 0.27047352 0.071815055 2.558369271 0.022387116 0.025236019 3.70E-08 7.432127235 0.531642919 GSAVHQLSEELR ddPTM_HeLa_CUDC101_4h_R1 2 GSAVHQLSEELR 12 0 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 ; ; 92.943 0.016324 17296300 7844.3 5604.3 5127.8 4388.6 8371.2 7487.9 6204.2 6297.4 6738.4 5780.9 FALSE FALSE TRUE 6924.803045 5776.96184 5405.024379 4567.586077 7753.673254 7345.080783 6443.498072 7014.270561 6460.6403 5746.51495 1.205043945 1.005298323 0.940574318 0.794844548 1.349282708 1.278180053 1.121287968 1.220612949 1.124271033 1 12.48847156 -5.716745952 24.99999952 1.059557785 1.236254101 0.441289473 0.120029619 138.5753953 77513.67953 0.020232832 0.040465518 1.92E-06 5.716745952 0.176696315 TGSES(ph)PKVCSDQSSGSGTGK ddPTM_HeLa_CUDC101_4h_R1 1 TGSESPKVCSDQSSGSGTGK 20 1 O15169-2;O15169 O15169-2 AXIN1 Axin-1 1 0 T(0.01)GS(0.013)ES(0.909)PKVCS(0.067)DQSSGSGTGK 99.011 0.00049051 50970000 4141.1 4193.2 3997 3844.5 4810.9 3749.3 4271.8 4220.9 4491 3372.8 TRUE FALSE FALSE 3655.686536 4322.387522 4213.08991 4001.295327 4456.009492 3677.788349 4436.564757 4701.390195 4305.879079 3352.738436 1.090358406 1.289211075 1.25661157 1.193440945 1.329065651 1.096950573 1.323265994 1.402253795 1.284287206 1 11.71112422 -7.431913457 2.152024417 1.033730436 1.265696996 0.133826868 0.112710522 0.142219418 1.268978729 0.015052721 0.016775119 3.70E-08 7.431913457 0.23196656 S(ph)WGQQAQEYQEQK ddPTM_HeLa_CUDC101_4h_R1 1 SWGQQAQEYQEQK 13 0 Q5VZK9;Q5VZK9-2 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 S(1)WGQQAQEYQEQK 226.39 6.01E-33 9068700 1192.4 1325.7 1160.8 1267.6 1342.8 1390.5 1140.8 755.51 1190.1 983.8 TRUE FALSE FALSE 1052.62868 1366.543246 1223.556359 1319.298207 1243.744319 1363.978529 1184.801038 841.5142045 1141.043574 977.9483138 1.076364328 1.397357331 1.251146244 1.349046967 1.27178942 1.394734783 1.211517031 0.860489448 1.166772884 1 9.933614408 -7.431777866 6.120847772 1.033139631 1.257042494 0.18945984 0.150272698 0.196660381 10.70538596 0.024595586 0.027908832 3.70E-08 7.431777866 0.223902863 TSDS(ph)PWFLSGSETLGR ddPTM_HeLa_CUDC101_4h_R1 1 TSDSPWFLSGSETLGR 16 0 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 T(0.002)S(0.002)DS(0.994)PWFLS(0.001)GSETLGR 109.1 0.0018559 5036000 888.52 653.79 778.03 516.14 665.47 717.1 714.85 427.17 674.52 905.72 TRUE FALSE FALSE 784.3690325 673.932495 820.0926552 537.1904201 616.3796039 703.4225123 742.422004 475.7973061 646.7160001 900.3327372 0.871199058 0.748537143 0.910877303 0.596657656 0.68461312 0.781291719 0.824608473 0.528468295 0.718307769 1 9.814314468 -7.430505848 0.373336873 1.013697696 0.667658865 0.091673936 0.129553425 0.570470826 0.229036138 0.066811692 0.066041026 3.71E-08 7.430505848 -0.346038831 T(ph)PVLFGY(ph)TMQSGCK ddPTM_HeLa_CUDC101_4h_R1 1 TPVLFGYTMQSGCK 14 0 A0A087X1J4;Q2MV58-4;Q2MV58-3;Q2MV58;Q2MV58-2 A0A087X1J4 TCTN1 Tectonic-1 2 0 T(1)PVLFGY(0.769)T(0.205)MQS(0.026)GCK 77.185 0.016192 140970000 1231.6 2497.9 1648.8 2535 3226.3 3412.5 2802.9 1308.6 2316.7 154.43 TRUE FALSE FALSE 1087.233715 2574.857338 1737.939115 2638.388257 2988.302277 3347.412248 2911.008792 1457.565734 2221.204645 153.5114435 7.0824278 16.77306447 11.32123492 17.18691582 19.46631605 21.8056203 18.96281297 9.4948344 14.46930988 1 7.262202395 -7.430389071 0.742757255 2.122668957 17.88341712 0.254978082 5.301401982 0.198290614 0.231726645 0.996051324 1.061662298 3.71E-08 7.430389071 15.76074816 TQQLHPVLQKPSVFGNDS(ph)DDDDETSVSESLQR ddPTM_HeLa_CUDC101_4h_R1 2 TQQLHPVLQKPSVFGNDSDDDDETSVSESLQR 32 1 Q9H0G5 Q9H0G5 NSRP1 Nuclear speckle splicing regulatory protein 1 1 0 TQQLHPVLQKPS(0.01)VFGNDS(0.987)DDDDET(0.002)S(0.001)VSESLQR;TQQLHPVLQKPS(0.003)VFGNDS(0.995)DDDDET(0.001)SVSESLQR ; 114.73 3.52E-12 169289000 4380.2 3148.5 2672.7 3041.9 4015.5 3120.2 2921.9 2835.6 3602 4305.8 TRUE FALSE FALSE 3866.759596 3245.501553 2817.194246 3165.96183 3719.284565 3060.687384 3034.598662 3158.393242 3453.524035 4280.18891 0.903408629 0.758261287 0.658193904 0.73967806 0.868953367 0.715082312 0.708987086 0.737909777 0.806862526 1 12.06345876 -7.429289183 1.873769588 0.964796819 0.738455626 0.468568826 0.072636568 0.11536121 0.78372346 0.011237303 0.01251426 3.72E-08 7.429289183 -0.226341193 GSDFDCELR ddPTM_HeLa_CUDC101_4h_R1 1 GSDFDCELR 9 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 159.28 0.0004303 44566000 4224.5 3777.8 3383.1 3643.1 3704.8 3153.2 3281 3466.2 3491.6 1760.8 FALSE FALSE TRUE 3729.310514 3894.18954 3566.000619 3791.681365 3431.504285 3093.057964 3407.549269 3860.778197 3347.67477 1750.326683 2.13063684 2.224835842 2.037334318 2.166270675 1.960493614 1.767131812 1.946807588 2.205747209 1.912599975 1 10.7734085 -9.188049417 0.823254951 0.965473641 2.050875471 0.189562231 0.307039223 0.174679965 0.203272426 0.12059726 0.030291569 6.49E-10 9.188049417 1.08540183 T(ph)GT(ph)PRT(ph)TAVS(ph)S(ph)NRDPK ddPTM_HeLa_CUDC101_4h_R1 1 TGTPRTTAVSSNRDPK 16 2 Q8N7P7 Q8N7P7 Uncharacterized protein FLJ40521 5 0 T(0.994)GT(0.994)PRT(0.512)T(0.512)AVS(0.998)S(0.992)NRDPK 50.149 0.0030469 0 451.87 264.79 245.26 366.88 445.16 242.34 240.9 395.02 478.94 440.21 TRUE FALSE FALSE 398.9024836 272.947866 258.5194975 381.8429522 412.3214337 237.7177683 250.1915937 439.9874801 459.1978905 437.5916113 0.911586222 0.623750225 0.590778001 0.87260117 0.942251686 0.543241146 0.571746778 1.005475125 1.049375442 1 8.773441272 -7.429156056 4.79216403 0.962206865 0.730012312 0.354453415 0.155381763 0.195984924 7.261689546 0.026660497 0.030094723 3.72E-08 7.429156056 -0.232194553 TVSLGAGAKDELHIVEAEAMNY(ph)EGSPIK ddPTM_HeLa_CUDC101_4h_R1 1 TVSLGAGAKDELHIVEAEAMNYEGSPIK 28 1 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 1 0 TVSLGAGAKDELHIVEAEAMNY(0.735)EGS(0.265)PIK 72.227 3.73E-05 35903000 8653.9 6470.8 6068.1 6012.3 7723.4 7175.6 6247.5 6032.5 7856.9 8235.8 TRUE FALSE FALSE 7639.50296 6670.157678 6396.159841 6257.507581 7153.660169 7038.737385 6488.468168 6719.215416 7533.035256 8186.813095 0.933147352 0.814744101 0.781275909 0.764339861 0.873802796 0.859765247 0.792551154 0.820736389 0.920142572 1 12.99908624 -7.428693883 2.078523815 0.974998354 0.814108875 0.726518435 0.037743298 0.100579224 0.837528029 0.007267411 0.008105459 3.73E-08 7.428693883 -0.160889479 RIDTPS(ph)LEEPSDLEELEQFAK ddPTM_HeLa_CUDC101_4h_R1 1 RIDTPSLEEPSDLEELEQFAK 21 1 A0A0C4DG88;P14859-4;P14859-5;P14859-3;P14859;P14859-2;P14859-6 A0A0C4DG88 POU2F1 "POU domain protein;POU domain, class 2, transcription factor 1" 1 0 RIDT(0.033)PS(0.617)LEEPS(0.35)DLEELEQFAK 94.958 0.00021586 11340000 5130 4094.2 3998.1 3921.5 4069 4194.5 4516.4 4745 4653.8 4671.9 TRUE FALSE FALSE 4528.669177 4220.337449 4214.24938 4081.43572 3768.837977 4114.496901 4690.599061 5285.15162 4461.968394 4644.111331 0.975142251 0.908750275 0.907439353 0.878841059 0.811530497 0.885960006 1.010010038 1.138032929 0.960779808 1 12.18118684 -7.42779224 3.790080643 0.989616614 0.927628991 0.048244316 0.083923728 0.44598675 11.28966525 0.015557646 0.017474319 3.73E-08 7.42779224 -0.061987623 SGDET(ph)PGSEVPGDK ddPTM_HeLa_CUDC101_4h_R1 1 SGDETPGSEVPGDK 14 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 SGDET(0.998)PGS(0.002)EVPGDK 134.4 0.0033731 76110000 7625.4 5640.8 5731.3 6529.6 5505.1 6885.5 6395.4 4569.6 6501.5 7108.8 TRUE FALSE FALSE 6731.562171 5814.586362 6041.151414 6795.905311 5098.999741 6754.17056 6642.07272 5089.784793 6233.505418 7066.516541 0.95259979 0.822836305 0.854898079 0.961705144 0.721571896 0.955799158 0.939935919 0.720267867 0.882118563 1 12.78678349 -7.426994293 3.765088023 0.980230308 0.860364078 0.153350611 0.087382177 0.202077046 5.052783193 0.013599799 0.015276312 3.74E-08 7.426994293 -0.11986623 SVS(ph)PVQDLDDDTPPSPAHSDMPYDAR ddPTM_HeLa_CUDC101_4h_R1 1 SVSPVQDLDDDTPPSPAHSDMPYDAR 26 0 G3V3A7;O00409-2;O00409 G3V3A7 FOXN3 Forkhead box protein N3 1 0 S(0.116)VS(0.844)PVQDLDDDT(0.039)PPS(0.001)PAHSDMPYDAR 59.567 0.0030466 4021800 777.21 465.96 435.4 444.48 759.15 526.01 620.46 593.17 471.94 748.05 TRUE FALSE FALSE 686.106622 480.3156753 458.939041 462.6078156 703.1490169 515.9772356 644.39135 660.6940751 452.4864334 743.6005653 0.922681684 0.64593237 0.617184901 0.622118698 0.945600434 0.693890322 0.866582652 0.888506687 0.608507382 1 9.538384057 -7.426882736 5.189518818 0.966738537 0.753579883 0 0.157687464 0.160168192 6.624126171 0.01991255 0.022528722 3.74E-08 7.426882736 -0.213158654 PGGQAPS(ph)SPSYENSLHSLQSR ddPTM_HeLa_CUDC101_4h_R1 1 PGGQAPSSPSYENSLHSLQSR 21 0 Q99081;Q99081-4;Q99081-2;B4DZP2 Q99081 TCF12 Transcription factor 12 1 0 PGGQAPS(0.733)S(0.216)PS(0.045)YENS(0.003)LHS(0.003)LQSR 136.61 2.50E-07 0 932.08 510.41 582.25 352.64 888.8 776.36 723.23 693.18 933.18 883.46 TRUE FALSE FALSE 822.8229953 526.1351271 613.7281962 367.0221834 823.2349947 761.5522265 751.1252234 772.0888093 894.7139254 878.2051406 0.93693712 0.599102764 0.698843776 0.417923064 0.937406258 0.867168946 0.855295863 0.879166807 1.018798324 1 9.778414169 -7.425492215 6.984703008 0.972458561 0.751709562 0.35057479 0.14672125 0.231500609 14.34437182 0.026099777 0.029702881 3.75E-08 7.425492215 -0.220748999 LLVDVDESTLS(ph)PEEQKER ddPTM_HeLa_CUDC101_4h_R1 2 LLVDVDESTLSPEEQKER 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 LLVDVDEST(0.003)LS(0.997)PEEQKER;LLVDVDES(0.007)T(0.019)LS(0.974)PEEQKER ; 123.58 4.64E-05 96580000 5240.1 3925.6 3810.8 3838.9 4914.5 4424.3 4101.1 4496.5 4731.3 4773.7 TRUE FALSE FALSE 4625.863421 4046.543083 4016.823375 3995.466935 4551.967126 4339.913849 4259.280801 5008.363385 4536.273811 4745.30582 0.974829357 0.852746532 0.846483562 0.841983022 0.959256853 0.914569896 0.897577725 1.055435324 0.955949729 1 12.21228535 -7.425115945 6.522863164 0.989034737 0.9063741 0.198288631 0.06082829 0.231907562 13.07450142 0.010308523 0.011719304 3.76E-08 7.425115945 -0.082660638 GDMS(ph)DEDDENEFFDAPEIITMPENLGHKR ddPTM_HeLa_CUDC101_4h_R1 2 GDMSDEDDENEFFDAPEIITMPENLGHKR 29 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR ; 97.23 3.37E-09 9291200 1225.85 1338.2 1177.64 1208.58 1868.3 1478.03 1456.36 1247.77 1557.48 801.63 TRUE FALSE FALSE 1082.157721 1379.428356 1241.306781 1257.871116 1730.479231 1449.83904 1512.532293 1389.811093 1493.280015 796.8618691 1.358024224 1.731075873 1.557743981 1.578530941 2.171617564 1.819435835 1.898111017 1.744105405 1.873950898 1 9.638185854 -7.424850093 0.486284404 1.015402931 1.914469394 0.022689047 0.303723279 0.236591368 0.138419649 0.067780724 0.069212966 3.76E-08 7.424850093 0.899066463 QQSHFAMMHGGTGFAGIDSS(ph)SPEVK ddPTM_HeLa_CUDC101_4h_R1 5 QQSHFAMMHGGTGFAGIDSSSPEVK 25 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 QQSHFAMMHGGTGFAGIDS(0.057)S(0.471)S(0.471)PEVK;QQSHFAMMHGGT(0.006)GFAGIDS(0.079)S(0.457)S(0.457)PEVK;QQSHFAMMHGGTGFAGIDS(0.296)S(0.352)S(0.352)PEVK;QQSHFAMMHGGT(0.001)GFAGIDS(0.109)S(0.445)S(0.445)PEVK;QQSHFAMMHGGTGFAGIDS(0.114)S(0.443)S(0.443)PEVK ;;;; 94.259 7.47E-06 113057600 14491.6 10125.4 10354.9 9126.5 13188.6 11680.2 12271.4 9309.94 13275.7 13701.3 TRUE FALSE FALSE 12792.91662 10437.35157 10914.71722 9498.718118 12215.70325 11457.41965 12744.71201 10369.74594 12728.47003 13619.80406 0.939287861 0.766336397 0.801385774 0.697419587 0.896907415 0.841232341 0.935748558 0.761372623 0.934556031 1 13.73341833 -7.424432301 3.987474366 0.974485309 0.8184904 0.495125183 0.066351141 0.132648319 3.630566284 0.011770375 0.013244106 3.76E-08 7.424432301 -0.155994909 YSPSQNS(ph)PIHHIPSR ddPTM_HeLa_CUDC101_4h_R1 1 YSPSQNSPIHHIPSR 15 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;H0YF00;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 YS(0.057)PS(0.184)QNS(0.759)PIHHIPSR 126.25 0.00049799 50867000 2332.6 1476.2 1319.7 1573.4 2020.2 1877.5 1967.8 1524.6 2066.3 2224.7 TRUE FALSE FALSE 2059.176164 1521.679972 1391.046974 1637.570053 1871.173871 1841.689816 2043.698705 1698.154301 1981.126239 2211.467385 0.931135669 0.688086102 0.629015369 0.740490257 0.846123204 0.832790855 0.924136941 0.767885754 0.895842395 1 11.11078825 -7.423938183 5.072334344 0.970402491 0.779488488 0.458477465 0.082208193 0.138933141 5.482297823 0.015464137 0.017494679 3.77E-08 7.423938183 -0.190914003 KRKPS(ph)PEPEGEVGPPK ddPTM_HeLa_CUDC101_4h_R1 2 KRKPSPEPEGEVGPPK 16 3 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 KRKPS(1)PEPEGEVGPPK;KRKPS(1)PEPEGEVGPPK ; 86.575 0.0071329 201577000 9571 11206.5 10931.7 10207.3 14127.6 10997.4 10795.9 13785.4 10502.4 6146.5 TRUE FALSE FALSE 8449.101889 11551.75898 11522.70077 10623.59781 13085.43509 10787.64292 11212.30148 15354.67421 10069.48663 6109.940345 1.382845235 1.890650044 1.885894153 1.738740023 2.141663315 1.765588911 1.835091809 2.513064506 1.648049909 1 12.57694258 -7.423625158 0.442240912 0.979173689 2.111944697 0.442461034 0.287268056 0.292071538 0.148544221 0.107170053 0.108398604 3.77E-08 7.423625158 1.132771008 YYS(ph)IDDNQNK ddPTM_HeLa_CUDC101_4h_R1 1 YYSIDDNQNK 10 0 Q8NI08-2;Q8NI08;Q8NI08-4;Q8NI08-3;Q5TF97;Q5TF96 Q8NI08-2 NCOA7 Nuclear receptor coactivator 7 1 0 Y(0.115)Y(0.002)S(0.883)IDDNQNK 125.23 0.0035592 37289000 4288.7 2362 2340.8 2247.6 2321.4 2333.6 2882.5 4912.6 2814.5 4311.3 TRUE FALSE FALSE 3785.985087 2434.77042 2467.350729 2339.266843 2150.154947 2289.090468 2993.678991 5471.830527 2698.485119 4285.656196 0.883408494 0.568120799 0.575722974 0.545836328 0.501709621 0.534128349 0.698534566 1.276777762 0.629655062 1 12.0653004 -7.421172756 3.759539933 0.951278564 0.652738032 0.033854096 0.236745233 0.22739355 5.627623467 0.037974964 0.042714582 3.79E-08 7.421172756 -0.298540531 S(ph)RSFDYNYR ddPTM_HeLa_CUDC101_4h_R1 1 SRSFDYNYR 9 1 O75494-6;O75494-3;Q5JRI1;O75494-5;O75494-4;O75494-2;O75494 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.971)RS(0.029)FDYNYR 72.731 0.033861 8555700 1784.5 1674.9 1610.9 1895.8 1821.3 1554 1222.9 1721.6 1922.5 1538.3 TRUE FALSE FALSE 1575.323615 1726.501684 1697.990127 1973.118918 1686.946328 1524.360039 1270.067663 1917.579985 1843.253736 1529.150123 1.030195526 1.129059637 1.110414276 1.290336958 1.103192095 0.996867486 0.830570945 1.254016827 1.20541058 1 10.57851433 -7.420765702 4.616869393 1.012887621 1.095036302 0 0.134819828 0.44580053 15.16990565 0.021279397 0.024035643 3.80E-08 7.420765702 0.08214868 GIS(ph)PVVSEHR ddPTM_HeLa_CUDC101_4h_R1 1 GISPVVSEHR 10 0 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHH4;A0A5F9ZHX3;F8W0B5;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 GIS(1)PVVSEHR 78.964 0.029655 4718000 4531.6 2319.1 2117.7 2025.3 4298.2 3843.6 2920.4 2680.4 4049.5 4508.3 TRUE FALSE FALSE 4000.412717 2390.548722 2232.189268 2107.900488 3981.130349 3770.289734 3033.040806 2985.525901 3882.577896 4481.484431 0.89265349 0.533427876 0.498091492 0.470357651 0.888350816 0.841303767 0.676793784 0.666191292 0.866359787 1 12.12976097 -7.41958901 4.741107527 0.954058862 0.658207077 0.459448334 0.131939097 0.14534476 5.122640719 0.025008814 0.028269761 3.81E-08 7.41958901 -0.295851786 SVSTTNIAGHFNDES(ph)PLGLR ddPTM_HeLa_CUDC101_4h_R1 2 SVSTTNIAGHFNDESPLGLR 20 0 Q92974-2;Q92974;V9GYM8;A0A5F9ZI21;Q92974-3;V9GYF5;V9GYG5;V9GZ14 Q92974-2 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 SVSTTNIAGHFNDES(1)PLGLR;SVSTTNIAGHFNDES(1)PLGLR ; 259.64 5.21E-71 16000300 1560.56 1093.4 964.18 743.53 977.77 1436.26 1317.92 772.08 1077.74 1573.73 TRUE FALSE FALSE 1377.633522 1127.086358 1016.306487 773.8543672 905.6418551 1408.865733 1368.752616 859.9704663 1033.315101 1564.369384 0.880631861 0.720473291 0.649658896 0.494674963 0.578918166 0.90059659 0.874954873 0.549723406 0.660531401 1 10.61136549 -7.419506039 1.665938111 0.957780683 0.680597423 0.097730511 0.155434902 0.230805886 1.241069852 0.026141014 0.029166518 3.81E-08 7.419506039 -0.277183259 ALS(ph)DVTDEEEVQVDPR ddPTM_HeLa_CUDC101_4h_R1 2 ALSDVTDEEEVQVDPR 16 0 Q16659 Q16659 MAPK6 Mitogen-activated protein kinase 6 1 0 ALS(0.998)DVT(0.002)DEEEVQVDPR;ALS(0.888)DVT(0.112)DEEEVQVDPR ; 169.02 3.71E-07 2554700 910.65 978.57 822.1 787.71 979.39 1088.69 860.23 578.18 1002.99 810.64 TRUE FALSE FALSE 803.9049875 1008.718582 866.5452127 819.8362186 907.1423509 1067.925052 893.4093593 643.9976741 961.6463277 805.8182772 0.997625656 1.251794121 1.075360583 1.017395909 1.1257406 1.325267846 1.108698306 0.799184745 1.19337865 1 9.654310718 -7.415971224 19.84030554 0.998835075 1.107583429 0 0.145137407 9.163917358 1688.66886 0.022018538 0.025178675 3.84E-08 7.415971224 0.108748354 NHSDSSTSESEVSS(ph)VSPLK ddPTM_HeLa_CUDC101_4h_R1 2 NHSDSSTSESEVSSVSPLK 19 0 Q9NY27-2;Q9NY27-3;Q9NY27;H7C559;C9IZ04 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 1 0 NHSDSSTSESEVSS(0.768)VS(0.232)PLK;NHSDSS(0.001)TS(0.001)ESEVS(0.028)S(0.545)VS(0.425)PLK ; 297.55 1.26E-123 30216100 7150 2466.8 2578.6 2159.73 6748.5 5559.7 4377 3661.9 7346.5 7218.9 TRUE FALSE FALSE 6311.887839 2542.799184 2718.006916 2247.813125 6250.6766 5453.657986 4545.822356 4078.755894 7043.674161 7175.961662 0.879587731 0.354349606 0.378765529 0.313242075 0.871057692 0.759989844 0.633479187 0.568391539 0.981565188 1 12.80895647 -7.414753599 5.708472597 0.947781509 0.561929056 0.544698792 0.168236757 0.144896272 6.441315805 0.031837619 0.036143554 3.85E-08 7.414753599 -0.385852453 LS(ph)KSQGGEEEGPLSDK ddPTM_HeLa_CUDC101_4h_R1 1 LSKSQGGEEEGPLSDK 16 1 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 0 LS(0.691)KS(0.309)QGGEEEGPLSDK 100.58 0.020869 11500000 850.24 1092.4 934.63 907.27 1191.3 966.69 789.78 935.69 928.12 656.46 TRUE FALSE FALSE 750.5761561 1126.055549 985.1589249 944.2723922 1103.420172 948.2519989 820.2420792 1042.205167 889.8625008 652.5553467 1.150210721 1.72560926 1.509694051 1.447038013 1.69092197 1.45313651 1.256969364 1.597113827 1.363658279 1 9.349956459 -7.414164665 5.147602576 1.064728269 1.514576414 0.481997323 0.158825269 0.088191357 3.422752439 0.022981421 0.026041224 3.85E-08 7.414164665 0.449848145 LGDASDT(ph)EAADGER ddPTM_HeLa_CUDC101_4h_R1 2 LGDASDTEAADGER 14 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 LGDAS(0.138)DT(0.862)EAADGER;LGDAS(0.018)DT(0.982)EAADGER ; 272.74 3.03E-85 97141000 2993 2169.79 2490.95 1926.34 2531.45 2552.8 2269.7 2129.11 2351.6 2788.7 TRUE FALSE FALSE 2642.165077 2236.638658 2625.618292 2004.904472 2344.709977 2504.109593 2357.243089 2371.479276 2254.666053 2772.112688 0.953123258 0.806835403 0.947154242 0.72324061 0.845820585 0.903321717 0.850341726 0.855477227 0.813338528 1 11.43677019 -7.410608581 3.908243229 0.980331624 0.848808702 0.032233776 0.076702953 0.128361383 3.342320206 0.009492716 0.01070913 3.89E-08 7.410608581 -0.131522922 DSGSS(ph)SPLPK ddPTM_HeLa_CUDC101_4h_R1 3 DSGSSSPLPK 10 0 Q86VQ1;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 DSGS(0.025)S(0.648)S(0.326)PLPK;DSGS(0.042)S(0.654)S(0.304)PLPK;DSGS(0.001)S(0.5)S(0.5)PLPK ;; 181.87 4.50E-11 89343000 23059.3 18587.5 17863.9 18680.9 17547.2 17170.1 17076.7 15534.2 21993.6 23120.1 TRUE FALSE FALSE 20356.32381 19160.15884 18829.67647 19442.78785 16252.77801 16842.60895 17735.35404 17302.55054 21087.0145 22982.58062 0.885728376 0.833681785 0.819302096 0.845979317 0.707178114 0.732842374 0.771686798 0.752854992 0.917521616 1 14.48825318 -7.410155327 0.347395686 1.013496357 0.720031605 0.804033261 0.038033316 0.254046957 0.092544829 0.025451636 0.02549814 3.89E-08 7.410155327 -0.293464753 SHSS(ph)PSQIPK ddPTM_HeLa_CUDC101_4h_R1 2 SHSSPSQIPK 10 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 SHS(0.144)S(0.844)PS(0.011)QIPK;SHS(0.121)S(0.878)PS(0.001)QIPK ; 123.51 0.0039799 115625000 15663.7 11117.6 12531.5 11863.5 13576.7 11872.9 13097.2 10739.8 13802.3 14332.5 TRUE FALSE FALSE 13827.62483 11460.12008 13208.9908 12347.34481 12575.17389 11646.44421 13602.36339 11962.37542 13233.36335 14247.24965 0.970546959 0.804374203 0.927125664 0.866647606 0.882638698 0.817452105 0.954736088 0.839626996 0.928836349 1 13.79839582 -7.409573347 6.49484826 0.987142456 0.874230819 0.449862722 0.047231981 0.111928384 5.681525512 0.006836279 0.00777927 3.89E-08 7.409573347 -0.112911637 VISHDRDS(ph)PPPPPPPPPPPQPQPSLK ddPTM_HeLa_CUDC101_4h_R1 2 VISHDRDSPPPPPPPPPPPQPQPSLK 26 1 Q69YN4-3;Q69YN4;Q69YN4-4;Q69YN4-2 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 VIS(0.152)HDRDS(0.848)PPPPPPPPPPPQPQPSLK;VIS(0.082)HDRDS(0.918)PPPPPPPPPPPQPQPSLK ; 177.44 4.88E-14 30390000 5678.5 3609.9 4137.3 3833.6 4863.5 4510.2 4663.1 4137.5 4210.7 5057.5 TRUE FALSE FALSE 5012.874838 3721.11674 4360.974953 3989.950778 4504.729294 4424.17545 4842.957329 4608.496276 4037.133164 5027.417765 0.997107277 0.740164616 0.867438346 0.793638199 0.896032418 0.880009511 0.963309109 0.916672632 0.803023212 1 12.29560186 -7.408570389 16.63688766 0.998723886 0.868163073 0 0.085183014 1.140215727 161.8620349 0.01012518 0.011577763 3.90E-08 7.408570389 -0.130560813 GSGGFGSTGK(ac)N ddPTM_HeLa_CUDC101_4h_R1 2 GSGGFGSTGKN 11 1 H0YNW5;A0A0C4DGL3;P33316;P33316-2 H0YNW5;P33316;P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 0 1 ; GSGGFGSTGK(1)N;GSGGFGSTGK(1)N 107.11 0.0064921 6592200 6768.2 8050.5 8275.9 8050.4 8553.9 7645.8 7168.6 7401.7 7344.2 8701 FALSE TRUE FALSE 5974.841856 8298.526363 8723.320187 8378.730109 7922.895839 7499.969104 7445.095303 8244.279609 7041.468967 8649.246065 0.690793372 0.959450835 1.008564229 0.968723753 0.916021556 0.86712403 0.860779685 0.953178988 0.814113613 1 13.07835867 TS(ph)PKPAVVETVTTAKPQQIQALMDEVTK ddPTM_HeLa_CUDC101_4h_R1 1 TSPKPAVVETVTTAKPQQIQALMDEVTK 28 2 P56192;H0YI94;H0YIP0 P56192 MARS "Methionine--tRNA ligase, cytoplasmic" 1 0 T(0.474)S(0.526)PKPAVVETVTTAKPQQIQALMDEVTK 82.157 1.09E-06 30238000 1654.5 1377.4 902.65 1438.5 1523.2 1356.6 1344.8 1100.3 1550 1585.3 TRUE FALSE FALSE 1460.562018 1419.836061 951.4499894 1497.168248 1410.836571 1330.725115 1396.669386 1225.553704 1486.108344 1575.870565 0.926828669 0.900985203 0.603761508 0.95005788 0.895274397 0.844438081 0.886284329 0.777699471 0.943039598 1 10.62193333 -7.40798688 2.004309487 0.971742249 0.836058569 0.28484223 0.090179062 0.280981932 2.165820902 0.016718846 0.01878175 3.91E-08 7.40798688 -0.13568368 GSGGGGGGGGQGSTNYGK(ac)SQR ddPTM_HeLa_CUDC101_4h_R1 2 GSGGGGGGGGQGSTNYGKSQR 21 1 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 1 ; GSGGGGGGGGQGSTNYGK(1)SQR;GSGGGGGGGGQGSTNYGK(1)SQR 344.29 2.44E-202 3684600 0 65.301 210.068 302.05 176.05 290.88 152.74 238.338 0 0 FALSE TRUE FALSE 0 67.31284641 221.4249115 314.3689046 163.0631422 285.3319486 158.631233 265.4694345 0 0 0 AQLDYVDLYLIHSPMS(ph)LKPGEELSPTDENGK ddPTM_HeLa_CUDC101_4h_R1 3 AQLDYVDLYLIHSPMSLKPGEELSPTDENGK 31 1 A0A0A0MSS8;P42330;S4R3Z2;S4R3D5 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 1 0 AQLDYVDLYLIHS(0.004)PMS(0.483)LKPGEELS(0.483)PT(0.029)DENGK;AQLDYVDLYLIHS(0.004)PMS(0.887)LKPGEELS(0.102)PT(0.006)DENGK;AQLDYVDLYLIHS(0.021)PMS(0.55)LKPGEELS(0.402)PT(0.028)DENGK ;; 122.53 2.39E-14 92833000 8787.7 6226.5 6143.9 7004 7379.6 7075.5 7217.5 6840.4 6821.8 7986.7 TRUE FALSE FALSE 7757.619127 6418.331085 6476.057818 7289.653394 6835.22161 6940.546626 7495.881393 7619.083486 6540.602517 7939.194753 0.977129214 0.80843603 0.815707137 0.918185486 0.860946459 0.87421292 0.94416142 0.95967963 0.823837016 1 12.95477697 -7.407390278 7.376725328 0.98997134 0.88306768 0 0.070162131 0.158660182 9.206938971 0.008410923 0.009586341 3.91E-08 7.407390278 -0.106903661 ETFASDTNEALASLDES(ph)QEGHAEAK ddPTM_HeLa_CUDC101_4h_R1 2 ETFASDTNEALASLDESQEGHAEAK 25 0 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 1 0 ETFASDTNEALASLDES(1)QEGHAEAK;ETFASDTNEALASLDES(1)QEGHAEAK ; 164.22 1.32E-11 75984000 8136.4 6258.6 5115.2 4887 5381.7 4901.7 3166.6 10991.2 8397.1 8221.4 TRUE FALSE FALSE 7182.663526 6451.420048 5391.743185 5086.312983 4984.702713 4808.208239 3288.736823 12242.39378 8050.967984 8172.498747 0.878882181 0.789406061 0.659742308 0.622369381 0.609936186 0.58834004 0.40241509 1.497998857 0.985129302 1 12.99656154 -7.407069355 1.278425474 0.960640215 0.699217506 0.113827326 0.275728375 0.555334937 1.77666236 0.05329809 0.059394903 3.92E-08 7.407069355 -0.261422709 SGWS(ph)SGR ddPTM_HeLa_CUDC101_4h_R1 2 SGWSSGR 7 0 A0A087WVC1;Q9BQ39 A0A087WVC1 DDX50 ATP-dependent RNA helicase DDX50 1 0 SGWS(0.98)S(0.02)GR;SGWS(0.945)S(0.055)GR ; 79.986 0.020947 15284900 23754 16264 22670 23109 17236 14315.8 15561 5277.2 26292 23475 TRUE FALSE FALSE 20969.59213 16765.07456 23895.60877 24051.48491 15964.53462 14042.74997 16161.19298 5877.935117 25208.23263 23335.36966 0.898618382 0.718440497 1.024008153 1.030687975 0.684134636 0.601779624 0.692562116 0.251889522 1.080258552 1 14.5102307 -4.348129984 0.619319015 0.948342669 6.24E-15 0.731216803 0.127306226 1.175752123 0.327020633 0.021967697 0.773274736 4.49E-05 4.348129984 -0.948342669 down GSGNLEAIHIIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 GSGNLEAIHIIKK 13 1 F5GWF6;P78371-2;P78371;F8VQ14 F5GWF6 CCT2 T-complex protein 1 subunit beta 0 1 ; GSGNLEAIHIIK(1)K;GSGNLEAIHIIK(1)K 109.15 0.0051248 1104760 1866.64 1028.08 1137.9 946.19 2526 2317.44 2468.81 2408.57 2107.55 1344.67 FALSE TRUE FALSE 1647.835289 1059.753926 1199.418316 984.779718 2339.662013 2273.238693 2564.032829 2682.751873 2020.675897 1336.671843 1.232789706 0.792830291 0.897316961 0.736740078 1.750363804 1.700670741 1.91822162 2.007038517 1.511721749 1 10.38442961 -5.672031036 6.415379663 1.045680137 1.851681201 0.765037339 0.221678242 0.069490597 4.117118203 0.028299458 0.05685955 2.13E-06 5.672031036 0.806001064 SAASNTGTPDGPEAPPGPDAS(ph)PDASFGK ddPTM_HeLa_CUDC101_4h_R1 1 SAASNTGTPDGPEAPPGPDASPDASFGK 28 0 O00562-2;O00562 O00562-2 PITPNM1 Membrane-associated phosphatidylinositol transfer protein 1 1 0 SAASNTGTPDGPEAPPGPDAS(0.952)PDAS(0.048)FGK 89.181 3.80E-07 7931300 1997.2 1578.2 1652.7 1483.7 1689.6 1738 1437.5 1739.7 1829.1 1824.4 TRUE FALSE FALSE 1763.091244 1626.822471 1742.049961 1544.211699 1564.961574 1704.850546 1492.944857 1937.740416 1753.703724 1813.548388 0.972177669 0.89703836 0.960575396 0.851486351 0.86292794 0.940063445 0.823217548 1.068480129 0.967001342 1 10.82459952 -7.406454633 1.417384794 0.99123905 0.907377616 0.153582283 0.065848733 0.37498391 1.465482997 0.011997709 0.013411532 3.92E-08 7.406454633 -0.083861434 LGT(ph)SAEGAHLR ddPTM_HeLa_CUDC101_4h_R1 1 LGTSAEGAHLR 11 0 Q15042-4;Q15042;Q15042-3 Q15042-4 RAB3GAP1 Rab3 GTPase-activating protein catalytic subunit 1 0 LGT(0.636)S(0.364)AEGAHLR 108.68 0.010392 5413900 1663 1283 1373.5 1314.6 1425.2 1289.9 1270.3 1322.4 1558.3 1536.5 TRUE FALSE FALSE 1468.065661 1322.527709 1447.755565 1368.21507 1320.065835 1265.297307 1319.295897 1472.936671 1494.066214 1527.36083 0.961178022 0.865890812 0.947880512 0.89580343 0.864278964 0.828420686 0.863774866 0.96436719 0.978201212 1 10.57682521 -7.406402061 0.735061084 0.993551002 0.878976775 0.497198427 0.0403018 0.303667764 0.34750764 0.010955084 0.011852782 3.92E-08 7.406402061 -0.114574227 ESVPEFPLS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 6 ESVPEFPLSPPK 12 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK;ESVPEFPLS(1)PPK ;;;;; 166.62 2.65E-05 2349451000 49269.8 40162.6 38525.3 36510.9 33293 32960.6 27245.5 17074.8 44000.1 50303.6 TRUE FALSE FALSE 43494.46873 41399.9621 40608.09425 37999.97232 30837.04172 32331.93147 28296.36806 19018.52621 42186.39725 50004.39195 0.869812971 0.827926518 0.812090552 0.759932695 0.616686665 0.646581834 0.565877655 0.380337116 0.843653839 1 15.60976719 -4.34336543 0.262957778 1.001488904 6.84E-19 0.892400552 0.0560081 1.169567842 0.065293919 0.023377299 0.379231912 4.54E-05 4.34336543 -1.001488904 down GSGTAEVELKK ddPTM_HeLa_CUDC101_4h_R1 2 GSGTAEVELKK 11 1 P14618;P14618-3;P14618-2;H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 88.155 0.012639 12571400 8395.6 8345.5 7870.5 8465.4 9074.7 8263.8 8598 8125.5 8391.6 8139.5 FALSE FALSE TRUE 7411.480495 8602.614963 8296.003037 8810.655603 8405.27746 8106.181783 8929.62774 9050.474076 8045.694696 8091.085892 0.916005663 1.063221313 1.025326285 1.088933639 1.038831817 1.001865744 1.103637739 1.118573477 0.994389975 1 12.98211762 -7.245760282 24.59427507 0.960336008 1.060760209 0.527844384 0.039854382 381.5606442 598517.2444 0.007542432 0.009219064 5.68E-08 7.245760282 0.100424201 DTHEDHDTSTENT(ph)DES(ph)NHDPQFEPIVSLPEQEIK ddPTM_HeLa_CUDC101_4h_R1 1 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 C9JJ34;P43487-2;P43487 C9JJ34 RANBP1 Ran-specific GTPase-activating protein 2 0 DT(0.002)HEDHDT(0.3)S(0.301)T(0.301)ENT(0.547)DES(0.547)NHDPQFEPIVS(0.001)LPEQEIK 70.028 3.45E-06 10276000 2126.1 1120.2 1093 902.99 2017.9 1909.2 1208.4 1115.4 2006.3 2112.1 TRUE FALSE FALSE 1876.881781 1154.712034 1152.090886 939.8178353 1869.043537 1872.785191 1255.008393 1242.372627 1923.599465 2099.537135 0.893950266 0.549984096 0.548735655 0.447630966 0.890216946 0.891999079 0.597754796 0.591736439 0.916201687 1 11.03585559 -7.406330318 4.406737694 0.954762545 0.651776752 0.487905847 0.137255824 0.14901725 4.613044307 0.025935984 0.029337974 3.92E-08 7.406330318 -0.302985793 PSGEAFVELES(ph)EDEVK ddPTM_HeLa_CUDC101_4h_R1 1 PSGEAFVELESEDEVK 16 0 P31943;G8JLB6;E9PCY7;D6RDU3;D6RBM0;D6RIH9;D6RJ04;D6RIU0;D6RIT2;D6RFM3;D6R9T0;D6RAM1;E7EN40;D6RDL0;E7EQJ0 P31943;E7EQJ0 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 1 0 PSGEAFVELES(1)EDEVK 130.87 0.00047592 2889100 2047.3 1367.1 1388.2 1370.7 1394.8 1306.7 1442.9 1168.7 1545.6 2042.1 TRUE FALSE FALSE 1807.318598 1409.218731 1463.250291 1426.603071 1291.908383 1281.776875 1498.553136 1301.740084 1481.889714 2029.953498 0.890325123 0.694212321 0.720829463 0.702776232 0.636422649 0.631431644 0.738220426 0.641265962 0.730011655 1 10.98723096 -7.406064735 0.963198003 0.97303946 0.666452439 0.406528495 0.086608663 0.095044382 0.177414918 0.009736548 0.010730332 3.93E-08 7.406064735 -0.306587021 GTQEVAPPTPLTPTSHTANTS(ph)PRPVSGMER ddPTM_HeLa_CUDC101_4h_R1 1 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 H7BYT1;P48730-2;P48730 H7BYT1 CSNK1D Casein kinase I isoform delta 1 0 GTQEVAPPTPLT(0.002)PT(0.007)S(0.019)HT(0.057)ANT(0.174)S(0.722)PRPVS(0.019)GMER 75.018 1.64E-05 36875000 6972.7 5131.6 4817.2 4493.7 6533.1 5072.2 5120 5048.1 5708.1 6660.9 TRUE FALSE FALSE 6155.370676 5289.698514 5077.632403 4676.972509 6051.166229 4975.456236 5317.480115 5622.755299 5472.809702 6621.280671 0.929634459 0.798893564 0.766865604 0.706354668 0.913896651 0.751434123 0.803089369 0.849194526 0.826548514 1 12.69289457 -7.405707181 2.157486329 0.97327042 0.795235429 0.306044367 0.071259616 0.12614376 1.122318028 0.010142321 0.011409678 3.93E-08 7.405707181 -0.178034991 GSK(ac)K(ac)AVTK ddPTM_HeLa_CUDC101_4h_R1 2 GSKKAVTK 8 2 O60814;P57053;P58876;P62807;Q16778;Q5QNW6;Q5QNW6-2;Q8N257;Q93079;U3KQK0;Q99877;Q99880;Q6DRA6;Q6DN03 O60814;P58876;P62807;Q16778;Q5QNW6;Q8N257;Q93079;U3KQK0;Q99880;Q6DRA6 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST2H2BF;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BL;HIST2H2BD;HIST2H2BC Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 2-F;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Putative histone H2B type 2-D;Putative histone H2B type 2-C 0 2 ; GSK(1)K(1)AVTK;GSK(1)K(1)AVTK 119.16 0.0042931 178832000 9176.1 11744.4 12787.5 23458.1 19279.7 22327 17831.7 10763.8 1910.45 1646.51 FALSE TRUE FALSE 8100.491468 12106.23104 13478.83093 24414.82271 17857.47494 21901.14967 18519.47464 11989.10748 1831.700442 1636.716485 4.949233139 7.396657364 8.235287572 14.91695289 10.91054871 13.38115054 11.31501687 7.325097285 1.119131174 1 10.67658872 -7.245756791 0.839168443 2.047034063 11.64424206 0.784199776 2.091784748 0.175609237 0.250330173 0.509949526 0.612676922 5.68E-08 7.245756791 9.597207998 GSK(ac)K(ac)AVTK(ac)AQK ddPTM_HeLa_CUDC101_4h_R1 2 GSKKAVTKAQK 11 3 O60814;P57053;P58876;P62807;Q16778;Q8N257;Q93079;U3KQK0;Q99877;Q99880;Q6DRA6;Q6DN03 O60814;P58876;P62807;Q16778;Q8N257;Q93079;U3KQK0;Q99880;Q6DRA6 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BL;HIST2H2BD;HIST2H2BC Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Putative histone H2B type 2-D;Putative histone H2B type 2-C 0 3 ; GSK(1)K(1)AVTK(1)AQK;GSK(1)K(1)AVTK(1)AQK 167.44 0.0033868 346870000 10291.3 16548 18747.6 27396 21877.7 23638.7 19028.9 13552.5 3115.9 2791.4 FALSE TRUE FALSE 9084.969415 17057.82427 19761.15196 28513.3273 20263.82566 23187.83118 19762.85105 15095.26182 2987.461283 2774.796629 3.274102801 6.147414225 7.121657768 10.27582598 7.302814717 8.35658763 7.122270095 5.44013268 1.076641528 1 11.43816632 -7.325260127 1.28151334 1.741865142 7.772214358 0.82566451 1.211753744 0.121157232 0.38481105 0.260782753 0.301213838 4.73E-08 7.325260127 6.030349215 GSK(ac)K(ac)AVTK(ac)VQK ddPTM_HeLa_CUDC101_4h_R1 2 GSKKAVTKVQK 11 3 Q5QNW6;Q5QNW6-2 Q5QNW6 HIST2H2BF Histone H2B type 2-F 0 3 ; GSK(1)K(1)AVTK(1)VQK;GSK(1)K(1)AVTK(1)VQK 150.68 0.0024077 61968000 4498.4 7418 10389 12521.7 10843.7 13476.8 10328.4 8185.5 1843.23 1621.11 FALSE TRUE FALSE 3971.104371 7646.539788 10950.66077 13032.38905 10043.78185 13219.75249 10726.76985 9117.304233 1767.251279 1611.467566 2.464278187 4.745078307 6.795458375 8.087279774 6.232692528 8.203548601 6.656522338 5.657764654 1.096671951 1 10.65415944 -7.141662204 1.528979758 1.541034961 7.060005907 0.907561494 0.777268442 0.076222736 0.341461814 0.152870408 0.190339006 7.22E-08 7.141662204 5.518970946 VASETHS(ph)EGSEYEELPK ddPTM_HeLa_CUDC101_4h_R1 1 VASETHSEGSEYEELPK 17 0 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 VAS(0.005)ET(0.03)HS(0.953)EGS(0.012)EYEELPK 61.862 0.029172 18040000 5876.7 3398.3 3840.3 3220.7 5670 4354.2 3359.4 3405.4 5856.2 5749.9 TRUE FALSE FALSE 5187.842134 3502.997595 4047.918234 3352.054067 5251.735396 4271.15089 3488.973183 3793.056971 5614.804957 5715.699339 0.907647836 0.612872964 0.708210491 0.58646438 0.918826391 0.747266544 0.610419299 0.663620801 0.98234785 1 12.48071431 -7.405388342 4.236380864 0.96077428 0.697136775 0.652962168 0.090965266 0.109392038 3.199213373 0.016462345 0.018612986 3.93E-08 7.405388342 -0.263637506 EKLQSFDS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 1 EKLQSFDSPER 11 1 E9PGM9;P78332;P78332-2 E9PGM9 RBM6 RNA-binding protein 6 1 0 EKLQS(0.002)FDS(0.998)PER 75.483 0.027459 82998000 5522.3 5553.2 5403.4 4977 5852.8 5198.7 4742 4884.6 5594.4 4815.1 TRUE FALSE FALSE 4874.984365 5724.28751 5695.524148 5179.983572 5421.050604 5099.543459 4924.900528 5440.64312 5363.796464 4786.459571 1.018494838 1.195933534 1.189924215 1.082216092 1.132580465 1.065410327 1.028923457 1.136673785 1.120618776 1 12.22474321 -7.404481115 8.148486934 1.008130234 1.115083642 0.153400134 0.060506126 0.18317515 11.67792561 0.008833986 0.010078192 3.94E-08 7.404481115 0.106953407 TTRT(ph)PDTSTYCYETAEK ddPTM_HeLa_CUDC101_4h_R1 2 TTRTPDTSTYCYETAEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.004)T(0.001)RT(0.994)PDTSTYCYETAEK;T(0.293)T(0.293)RT(0.411)PDT(0.002)STYCYETAEK ; 222.51 1.72E-31 263538000 10245.2 11759.6 11258.7 10490.5 13034.3 10515.5 10491.6 8932.7 12141.6 8202.6 TRUE FALSE FALSE 9044.273187 12121.89934 11867.37938 10918.34793 12072.78566 10314.93436 10896.26453 9949.562461 11641.11811 8153.81057 1.109208156 1.48665452 1.455439671 1.339048515 1.480631118 1.26504464 1.336340161 1.220234684 1.427690527 1 12.99325873 -7.404426693 4.61165036 1.046786668 1.369616121 0.107839511 0.147335959 0.084504516 2.778253425 0.015739348 0.017822006 3.94E-08 7.404426693 0.322829453 AKTQT(ph)PPVSPAPQPTEERLPSSPVYEDAASFK ddPTM_HeLa_CUDC101_4h_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 1 0 AKT(0.112)QT(0.699)PPVS(0.184)PAPQPT(0.002)EERLPS(0.001)S(0.001)PVY(0.001)EDAASFK 42.181 0.040365 19524000 1490.3 2115.3 1767.9 1621.2 2423.5 1637.5 1671 2019.1 2043.9 1070.1 TRUE FALSE FALSE 1315.609293 2180.469886 1863.478022 1687.319543 2244.723233 1606.267416 1735.45103 2248.946183 1959.649577 1063.734998 1.236782936 2.049824337 1.751825432 1.586221707 2.110227865 1.510025918 1.631469336 2.114197791 1.84223475 1 10.05492307 -7.404140416 4.520528687 1.101220352 1.800710938 0.207905389 0.313482061 0.089584329 2.86599003 0.036083453 0.040846704 3.94E-08 7.404140416 0.699490587 GSLDYRPLTTADPIDEHR ddPTM_HeLa_CUDC101_4h_R1 2 GSLDYRPLTTADPIDEHR 18 1 O00139-1;O00139-5;O00139;O00139-4;D6R9M0;O00139-2 O00139-1 KIF2A Kinesin-like protein KIF2A 0 0 ; ; 102.08 0.00095 12997100 9994.5 8590.2 8888.2 8045 9501 9251.5 8089.2 8412.1 9586 5808 FALSE FALSE TRUE 8822.959861 8854.85388 9368.722977 8373.109873 8800.130159 9075.043052 8401.203154 9369.699461 9190.861023 5773.453758 1.528194428 1.533718681 1.622724174 1.450277464 1.524240174 1.571856887 1.455143404 1.622893307 1.591917318 1 12.4952189 -9.127698518 0.646161846 0.950251769 1.544398253 0 0.190765191 0.172195882 0.115257396 0.057318922 0.012481919 7.45E-10 9.127698518 0.594146485 QLSGQST(ph)SSDTTYK ddPTM_HeLa_CUDC101_4h_R1 1 QLSGQSTSSDTTYK 14 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 QLS(0.002)GQS(0.112)T(0.271)S(0.271)S(0.271)DT(0.036)T(0.036)YK 164.88 0.0001001 14843000 3033 2664.3 2747.8 2873.4 2777.8 2679.9 2013.4 1230.3 2771.2 2798.1 TRUE FALSE FALSE 2677.476338 2746.383925 2896.35438 2990.589672 2572.887228 2628.785373 2091.057512 1370.352379 2656.969963 2781.456777 0.962616554 0.987390474 1.041308427 1.07518826 0.925014277 0.945110992 0.751785011 0.492674339 0.955244024 1 11.44162497 -4.339279263 1.392273345 0.991568545 0.326843239 0.940724509 0.039554936 0.178320722 0.336973774 0.005902327 0.158489637 4.58E-05 4.339279263 -0.664725306 down VLTANSNPS(ph)SPSAAKR ddPTM_HeLa_CUDC101_4h_R1 1 VLTANSNPSSPSAAKR 16 1 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 1 0 VLTANSNPS(0.492)S(0.492)PS(0.017)AAKR 103.99 0.0015793 84070000 2620.6 2156.8 2056.5 2160.3 2711.7 2058.1 2233.4 2001.4 2636 2357.2 TRUE FALSE FALSE 2313.417241 2223.248452 2167.680611 2248.406372 2511.663293 2018.845172 2319.542986 2229.231286 2527.342964 2343.17927 0.987298441 0.948817054 0.925102334 0.959553714 1.071904026 0.861583746 0.989912729 0.951370352 1.078595649 1 11.19425162 -7.403258865 4.262232865 0.99458738 0.959034597 0.166009852 0.056219966 0.401899712 11.83760643 0.00815993 0.009230086 3.95E-08 7.403258865 -0.035552783 LY(ph)REVMLETFRNLTS(ph)IGVS(ph) ddPTM_HeLa_CUDC101_4h_R1 1 LYREVMLETFRNLTSIGVS 19 2 K7EJ80;K7EJH5 K7EJ80 ZNF763 3 0 LY(1)REVMLET(0.312)FRNLT(0.312)S(0.688)IGVS(0.688) 49.343 0.032487 31443000 3067.4 6373.7 2809.9 5502.4 7871.7 7968.3 7230.1 3662.1 8211.1 266.93 TRUE FALSE FALSE 2707.844022 6570.066142 2961.811693 5726.811655 7291.020374 7816.317954 7508.967379 4078.978661 7872.634983 265.3422885 10.20509787 24.76072012 11.16223015 21.58273258 27.47779261 29.45749054 28.2991732 15.37251632 29.66973349 1 8.051710811 -7.402342741 0.528769429 1.664040844 25.92017399 0 10.25817297 0.279496263 0.185448858 2.112581562 2.220339635 3.96E-08 7.402342741 24.25613315 VGTEGLVDS(ph)FSQGLER ddPTM_HeLa_CUDC101_4h_R1 2 VGTEGLVDSFSQGLER 16 0 T1ECW5;O75170-6;O75170-2;O75170-4;O75170-3;O75170-5;O75170 T1ECW5 PPP6R2 Serine/threonine-protein phosphatase 6 regulatory subunit 2 1 0 VGTEGLVDS(0.969)FS(0.031)QGLER;VGT(0.002)EGLVDS(0.989)FS(0.009)QGLER ; 191.4 2.05E-11 18182300 3517 2489.91 2866.3 2306.77 2801.8 2291.03 2455.45 2361.3 2946.1 3513.2 TRUE FALSE FALSE 3104.742591 2566.621176 3021.260848 2400.850051 2595.116796 2247.33242 2550.157529 2630.100847 2824.660511 3492.30333 0.889024319 0.734936497 0.865119826 0.687468935 0.743096046 0.643510087 0.730222231 0.753113518 0.808824505 1 11.76996316 -7.402219529 0.553723364 0.989779959 0.701258588 0.435816215 0.075800563 0.202380841 0.144346142 0.018129061 0.019149032 3.96E-08 7.402219529 -0.288521371 S(ph)DSPVPTAPTSGGPK ddPTM_HeLa_CUDC101_4h_R1 1 SDSPVPTAPTSGGPK 15 0 B4E349;F5H6D8;B4DTN4;Q86U44 B4E349 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 1 0 S(0.617)DS(0.383)PVPTAPTSGGPK 186.08 7.85E-11 25607000 3490.3 2682.6 2522.5 2407 2144.7 2114.8 2606.3 1994.3 3108.8 3706.8 TRUE FALSE FALSE 3081.172325 2765.247726 2658.87398 2505.167864 1986.489754 2074.463713 2706.825864 2221.323051 2980.653948 3684.751789 0.836195354 0.750456987 0.721588355 0.679874251 0.539110873 0.562986012 0.734601954 0.602841976 0.808915802 1 11.84735172 -7.402064103 0.526066623 0.984014833 0.604469524 0.666393755 0.076085351 0.196505599 0.129347393 0.023249031 0.024427349 3.96E-08 7.402064103 -0.37954531 ALGQAASDNS(ph)GPEDAKR ddPTM_HeLa_CUDC101_4h_R1 2 ALGQAASDNSGPEDAKR 17 1 H3BUC9;A0A0G2JP90;A0A087WW46;A0A0G2JN29;A0A087X117;Q15155 H3BUC9 NOMO1 Nodal modulator 1 1 0 ALGQAAS(0.001)DNS(0.999)GPEDAKR;ALGQAAS(0.001)DNS(0.999)GPEDAKR ; 97.589 0.0021403 12770000 3469.4 3230.7 3245.9 3054.2 3336.2 3357 2808.8 3047.2 3224.1 3035.6 TRUE FALSE FALSE 3062.722191 3330.234038 3421.383172 3178.763477 3090.095173 3292.970818 2917.136357 3394.080931 3091.201233 3017.544116 1.014971803 1.103623977 1.133830373 1.053427342 1.024043081 1.09127512 0.966725338 1.124782538 1.024409624 1 11.55915915 -7.400738961 6.417806553 1.006547068 1.067693625 0.237618043 0.04707181 0.233361949 11.33663123 0.007778956 0.008854223 3.97E-08 7.400738961 0.061146557 VTQVDGNS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 3 VTQVDGNSPVR 11 0 B0YIW6;P48444-2;P48444 B0YIW6 ARCN1 Coatomer subunit delta 1 0 VTQVDGNS(1)PVR;VTQVDGNS(1)PVR;VTQVDGNS(1)PVR ;; 145.61 0.0010428 42274000 7927 6407.9 6563.7 6782.9 6299.9 6099.9 5910.5 6050.5 7226.9 7714.3 TRUE FALSE FALSE 6997.809077 6605.319804 6918.553476 7059.53598 5835.168928 5983.554571 6138.469965 6739.264463 6929.004123 7668.415001 0.912549605 0.861367023 0.902214274 0.920599104 0.760935464 0.780285701 0.800487449 0.878834083 0.903577092 1 12.9047127 -7.399601082 0.329844687 1.011039893 0.793312778 0.431065928 0.052432161 0.555552137 0.189040202 0.041660819 0.041996206 3.98E-08 7.399601082 -0.217727116 ASVSQTS(ph)PQSASSPR ddPTM_HeLa_CUDC101_4h_R1 1 ASVSQTSPQSASSPR 15 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 0 ASVS(0.005)QT(0.024)S(0.959)PQS(0.009)AS(0.003)SPR 247.02 1.09E-55 30135000 2432.3 2448.7 2684.4 2320.3 2440.6 2168.9 2052.2 2438.1 2285.9 2049.9 TRUE FALSE FALSE 2147.189481 2524.141545 2829.526784 2414.931863 2260.5618 2127.531846 2131.354041 2715.643449 2191.674234 2037.707104 1.053728221 1.238716565 1.388583658 1.185122169 1.109365422 1.044081283 1.045957016 1.332695677 1.07555901 1 10.99273098 -7.398462805 4.686466923 1.023118749 1.184482846 0.284975568 0.107073372 0.210444845 7.033508087 0.019592406 0.022207703 4.00E-08 7.398462805 0.161364098 HFSTESVPDEEGRQS(ph)PAMRPR ddPTM_HeLa_CUDC101_4h_R1 2 HFSTESVPDEEGRQSPAMRPR 21 2 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;V9GXZ1 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 HFSTESVPDEEGRQS(1)PAMRPR;HFSTESVPDEEGRQS(1)PAMRPR ; 61.52 0.013376 1434750000 1576.88 3269.1 2009.1 2687.1 4109.3 4301.6 3454.6 2073.5 3690.4 274.189 TRUE FALSE FALSE 1392.040517 3369.817096 2117.718023 2796.691553 3806.165126 4219.554147 3587.845079 2309.538859 3538.28015 272.5581116 5.107316412 12.36366467 7.769785351 10.26090009 13.96460044 15.48130093 13.16359677 8.473564939 12.98174591 1 8.090420047 -7.398238917 0.63142919 1.529105621 12.86792576 0 4.282029001 0.214868546 0.189562863 0.753731531 0.809216082 4.00E-08 7.398238917 11.33882014 RASS(ph)LNVLNVGGK ddPTM_HeLa_CUDC101_4h_R1 1 RASSLNVLNVGGK 13 1 Q07866-6;Q07866-4;G3V5R9;Q07866-9;Q07866-7;H0YG16;H0YJK1 Q07866-6 KLC1 Kinesin light chain 1 1 0 RAS(0.002)S(0.998)LNVLNVGGK 211.82 1.57E-23 61655000 2379.9 2185.8 2074.9 1947 2575.2 2098.6 2046.2 2079.1 2506.8 2096.8 TRUE FALSE FALSE 2100.93173 2253.141907 2187.07537 2026.407076 2385.232627 2058.572702 2125.122619 2315.77634 2403.468643 2084.32814 1.007965919 1.080991934 1.049295132 0.972211158 1.144365218 0.98764329 1.019572004 1.111042112 1.153114328 1 11.02536671 -7.398082848 7.713452546 1.00350243 1.048746535 0 0.068486954 0.360964667 21.2120777 0.007841622 0.008942965 4.00E-08 7.398082848 0.045244105 SLVESVSSS(ph)PNKESNEEEQVWHFLGK ddPTM_HeLa_CUDC101_4h_R1 1 SLVESVSSSPNKESNEEEQVWHFLGK 26 1 Q9H2U2-3;Q9H2U2;Q9H2U2-6;Q9H2U2-2;Q9H2U2-4 Q9H2U2-3 PPA2 "Inorganic pyrophosphatase 2, mitochondrial" 1 0 SLVES(0.001)VS(0.013)S(0.181)S(0.658)PNKES(0.147)NEEEQVWHFLGK 84.03 1.17E-05 176500000 3366.1 2686 2598 2694.3 3104.7 3252.8 2498.6 2657.5 3485.5 3027.2 TRUE FALSE FALSE 2971.530861 2768.752476 2738.455739 2804.1852 2875.672466 3190.75826 2594.971839 2960.019058 3341.826215 3009.19408 0.987483951 0.920097675 0.910029618 0.931872497 0.95562878 1.06033648 0.862347782 0.983658408 1.110538611 1 11.55516144 -7.397069782 6.021068804 0.994535984 0.945934944 0.233554586 0.061026872 0.295765707 13.3130468 0.008044457 0.009150803 4.01E-08 7.397069782 -0.04860104 GSNMDFREPTEEER ddPTM_HeLa_CUDC101_4h_R1 5 GSNMDFREPTEEER 14 1 Q15056;Q15056-2 Q15056 EIF4H Eukaryotic translation initiation factor 4H 0 0 ;;;; ;;;; 115.12 0.0029054 136074000 14846.6 16445.5 15924.7 16000.1 19167 15062.5 14931.1 17858.6 15209.1 14159.6 FALSE FALSE TRUE 13106.30405 16952.16636 16785.63745 16652.65324 17753.0886 14775.20791 15506.99753 19891.55084 14582.17446 14075.37807 0.93115112 1.204384442 1.192553221 1.183105218 1.261286802 1.049720145 1.101710906 1.413216095 1.036005881 1 13.78088605 -7.257628362 24.91105931 0.967488027 1.192550267 0.508135175 0.094536612 161.4783896 1055518.576 0.014978099 0.017980782 5.53E-08 7.257628362 0.22506224 SPTEYHEPVYANPFYRPT(ph)TPQR ddPTM_HeLa_CUDC101_4h_R1 1 SPTEYHEPVYANPFYRPTTPQR 22 1 S4R313;Q9NP74-2;Q9NP74;Q9NP74-3 S4R313 PALMD Palmdelphin 1 0 SPTEYHEPVY(0.001)ANPFY(0.052)RPT(0.473)T(0.473)PQR 70.837 0.0037697 31250000 1175 876.77 782.98 585.65 1018.9 661.95 682.95 1028.3 1168.7 1195.8 TRUE FALSE FALSE 1037.268281 903.7822445 825.3102672 609.5353384 943.7377769 649.3244066 709.2916103 1145.357515 1120.525691 1188.687328 0.872616588 0.760319575 0.694303916 0.51278021 0.793932731 0.546253326 0.596701583 0.963548183 0.94265806 1 10.21515356 -7.396691568 1.098509201 0.962211958 0.669803976 0.462534376 0.123401114 0.254420848 0.607524912 0.025799659 0.028738622 4.01E-08 7.396691568 -0.292407982 LDSDAGFHS(ph)LPR ddPTM_HeLa_CUDC101_4h_R1 2 LDSDAGFHSLPR 12 0 Q5SYE7-2;Q5SYE7 Q5SYE7-2 NHSL1 NHS-like protein 1 1 0 LDS(0.119)DAGFHS(0.881)LPR;LDS(0.003)DAGFHS(0.997)LPR ; 115.26 0.0028427 41335000 14864.6 10133.1 10926.8 11244.3 14044.5 12677.1 11236.9 9044.9 12664.6 13447.3 TRUE FALSE FALSE 13122.19412 10445.2888 11517.53586 11702.89116 13008.46522 12435.30544 11670.311 10074.53486 12142.55983 13367.31486 0.981662679 0.781405159 0.861619254 0.875485561 0.973154695 0.93027699 0.873048261 0.753669302 0.908376884 1 13.70642207 -7.396644466 8.205389953 0.991926741 0.871606853 0.29445163 0.065554924 0.193957396 12.11741263 0.010532945 0.012018308 4.01E-08 7.396644466 -0.120319887 AAS(ph)LSSIPSGIER ddPTM_HeLa_CUDC101_4h_R1 2 AASLSSIPSGIER 13 0 A0A494C1D7;Q03001-13 A0A494C1D7 DST Dystonin 1 0 AAS(0.998)LS(0.001)SIPSGIER;AAS(0.498)LS(0.006)S(0.011)IPS(0.485)GIER ; 93.766 0.013822 13886700 2321.46 1853.19 1586.84 1817.1 2229.94 2031.12 1690.38 1649.97 1768.65 2166.52 TRUE FALSE FALSE 2049.341978 1910.284587 1672.62937 1891.209192 2065.441769 1992.37977 1755.578523 1837.795915 1695.745498 2153.633443 0.95157418 0.887005444 0.776654623 0.878148135 0.959049822 0.925124829 0.815170534 0.853346665 0.787388171 1 11.072557 -7.396634516 2.312285079 0.980986139 0.870146483 0 0.078205662 0.190516285 1.935613979 0.009776512 0.01103718 4.01E-08 7.396634516 -0.110839656 IS(ph)APNVDFNLEGPK ddPTM_HeLa_CUDC101_4h_R1 4 ISAPNVDFNLEGPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK;IS(1)APNVDFNLEGPK ;;; 199.61 1.32E-16 984170000 19129.8 19795.1 17134.3 17340.8 22865.1 23976.8 20456.9 14925.9 16237.8 14855.1 TRUE FALSE FALSE 16887.43384 20404.96357 18060.63209 18048.03278 21178.38713 23519.48249 21245.92949 16625.00412 15568.47101 14766.7412 1.143612772 1.381819 1.223061462 1.22220824 1.434195049 1.592733438 1.438769001 1.125841097 1.054292941 1 13.85006386 -7.395912867 0.56223589 1.013562984 1.398462122 0.504032365 0.12833567 0.396802474 0.289760075 0.047225765 0.050220118 4.02E-08 7.395912867 0.384899137 PCSEETPAIS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 4 PCSEETPAISPSK 13 0 P33316-2;H0YNJ9 P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 PCSEET(0.002)PAIS(0.979)PS(0.019)K;PCSEETPAIS(0.982)PS(0.018)K;PCSEETPAIS(0.998)PS(0.001)K;PCSEETPAIS(1)PSK ;;; 233.28 3.37E-43 953254000 14033.3 11667.6 10767.7 11154 9759.1 8374.88 9210 9204 10636.2 15426.7 TRUE FALSE FALSE 12388.33785 12027.06493 11349.83443 11608.90833 9039.190636 8215.143118 9565.232785 10251.74616 10197.77133 15334.9413 0.80785036 0.784291553 0.740128978 0.75702333 0.589450619 0.535714024 0.623754118 0.668522034 0.665002306 1 13.90453502 -7.395531792 0.288886857 1.040512167 0.546244243 0.188669168 0.11318157 0.375394615 0.108046931 0.066196478 0.066446189 4.02E-08 7.395531792 -0.494267924 AAFTTPDHAPLS(ph)PQSSVASSGSEQTEEQGSSR ddPTM_HeLa_CUDC101_4h_R1 1 AAFTTPDHAPLSPQSSVASSGSEQTEEQGSSR 32 0 A0A087WZT0;M0QZ22;Q5PRF9;M0R0X3 A0A087WZT0 SAMD4B Protein Smaug homolog 2 1 0 AAFTTPDHAPLS(0.938)PQS(0.043)S(0.018)VAS(0.001)SGSEQTEEQGSSR 75.874 3.98E-06 28796000 1178 973.4 699.47 920.02 991.24 961.33 1037.1 1005.8 1156.2 1109.4 TRUE FALSE FALSE 1039.916626 1003.3893 737.285464 957.5423923 918.1182 942.9942319 1077.101294 1120.296206 1108.540947 1102.801239 0.942977382 0.909855071 0.668556978 0.868281933 0.832532797 0.855089928 0.97669576 1.015864116 1.005204662 1 10.10695708 -7.394861118 2.338981282 0.977147212 0.86828498 0.246974248 0.088024705 0.335917476 3.488433482 0.016998498 0.019202939 4.03E-08 7.394861118 -0.108862232 KPSVGVPPPASPS(ph)YPR ddPTM_HeLa_CUDC101_4h_R1 1 KPSVGVPPPASPSYPR 16 1 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 KPS(0.002)VGVPPPAS(0.408)PS(0.583)Y(0.006)PR 75.224 0.012737 199420000 2906.3 2736.7 2589.8 2693.5 3054.7 2319.6 2379.5 2761 2417.9 2573.6 TRUE FALSE FALSE 2565.62792 2821.014483 2729.812422 2803.352572 2829.360867 2275.357495 2471.278112 3075.30108 2318.233139 2558.292113 1.002867463 1.102694438 1.067044849 1.095790648 1.105956921 0.889404882 0.965987465 1.202091452 0.906164361 1 11.32096529 -7.394343562 11.76760962 1.001265643 1.054267179 0.164094753 0.085308482 1.043258334 93.78743529 0.013582298 0.015523795 4.03E-08 7.394343562 0.053001536 DSLLDGHFVLATLSDT(ph)DSHSQDLGSPER ddPTM_HeLa_CUDC101_4h_R1 2 DSLLDGHFVLATLSDTDSHSQDLGSPER 28 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 1 0 DSLLDGHFVLAT(0.004)LS(0.193)DT(0.306)DS(0.146)HS(0.253)QDLGS(0.098)PER;DSLLDGHFVLAT(0.024)LS(0.024)DT(0.611)DS(0.017)HS(0.112)QDLGS(0.212)PER ; 116.04 3.37E-11 32361000 8802.1 5503.3 5070.8 4568.6 9328 7897.8 6625.3 3938.6 7664.4 8385.9 TRUE FALSE FALSE 7770.331181 5672.85015 5344.942786 4754.927255 8639.892024 7747.162624 6880.84004 4386.954304 7348.470188 8336.020294 0.932139187 0.680522594 0.641186393 0.570407351 1.036452854 0.929359856 0.825434656 0.52626483 0.881532185 1 13.02514307 -7.393589313 4.773288351 0.970752371 0.755516972 0.248530233 0.151265129 0.217184074 7.425350806 0.0269861 0.030613652 4.04E-08 7.393589313 -0.215235399 AKTQT(ph)PPVS(ph)PAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_HeLa_CUDC101_4h_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 3 0 AKT(0.068)QT(0.931)PPVS(0.962)PAPQPT(0.177)EERLPS(0.416)S(0.416)PVY(0.026)EDAAS(0.003)FK 52.402 0.0075431 125220000 3605.1 3718.8 3530.9 3862.1 4955.5 3725.9 3140.3 2656.8 4115.4 2943.9 TRUE FALSE FALSE 3182.515643 3833.37182 3721.791134 4019.613131 4589.942638 3654.834665 3261.422423 2959.239373 3945.76147 2926.389552 1.087522897 1.309932171 1.271803042 1.373574181 1.568466042 1.248922811 1.114486764 1.011225375 1.348337738 1 11.51490611 -7.393356047 2.969180258 1.035490507 1.280225945 0 0.171531865 0.217588576 3.54760218 0.027229615 0.030787628 4.04E-08 7.393356047 0.244735438 T(ph)PASTPVSGTPQAS(ph)PMIER ddPTM_HeLa_CUDC101_4h_R1 1 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 2 0 T(0.462)PAS(0.001)T(0.019)PVS(0.062)GT(0.46)PQAS(0.996)PMIER 133.98 0.00016228 3694000 895.85 599.08 604.54 611.4 735.67 704.41 321.93 644.32 738.7 906.07 TRUE FALSE FALSE 790.839821 617.5369447 637.223261 636.3355347 681.4010898 690.9745529 334.3469479 717.6667844 708.2504733 900.6806553 0.87804686 0.685633627 0.707490782 0.706505165 0.756540163 0.767169306 0.371215864 0.796804928 0.786350266 1 9.814871866 -7.393075947 0.469939683 1.003247409 0.628975326 0.259540522 0.131594309 0.432506833 0.23975246 0.050986057 0.053359763 4.05E-08 7.393075947 -0.374272083 AGQS(ph)AAGAAPGGGVDTR ddPTM_HeLa_CUDC101_4h_R1 1 AGQSAAGAAPGGGVDTR 17 0 P21333-2;P21333 P21333-2 FLNA Filamin-A 1 0 AGQS(1)AAGAAPGGGVDTR 75.564 0.018379 6551100 984.09 876.62 1069.1 1014.2 1182.3 1223.2 1074.2 860.45 1030.5 698.48 TRUE FALSE FALSE 868.736462 903.6276231 1126.89878 1055.56346 1095.084084 1199.869498 1115.632254 958.4001499 988.0223538 694.3254099 1.251194972 1.301446858 1.623012443 1.520271971 1.577191428 1.728108292 1.606785864 1.380332818 1.422996105 1 9.43946816 -7.392468397 0.666659531 1.046345517 1.6017017 0.429512201 0.155134737 0.181637092 0.175421611 0.031219942 0.033825328 4.05E-08 7.392468397 0.555356184 HASSS(ph)PESPKPAPAPGSHR ddPTM_HeLa_CUDC101_4h_R1 1 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HAS(0.307)S(0.307)S(0.386)PESPKPAPAPGSHR 95.227 0.0010778 2017300 1713.1 862.82 815.19 770.03 1650.8 1330.2 1266.2 874.04 1636 1648.4 TRUE FALSE FALSE 1512.293015 889.4024615 859.2616372 801.4351518 1529.023773 1304.828651 1315.037758 973.5371806 1568.563388 1638.595243 0.922920423 0.5427835 0.524389193 0.489098913 0.93313085 0.796309312 0.802539714 0.594129139 0.95726104 1 10.67824382 -7.391025341 5.636115329 0.96640112 0.677194037 0.497239512 0.134461616 0.151542319 6.325144235 0.024978924 0.028401071 4.06E-08 7.391025341 -0.289207083 ASVS(ph)QTSPQSASSPR ddPTM_HeLa_CUDC101_4h_R1 2 ASVSQTSPQSASSPR 15 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 0 AS(0.018)VS(0.63)QT(0.297)S(0.026)PQS(0.029)AS(0.001)SPR;AS(0.056)VS(0.845)QT(0.023)S(0.006)PQS(0.07)ASSPR ; 156.17 9.64E-05 13179200 1594.25 1836.6 1490.63 1539.68 1795.36 1557.23 1432.29 1726.98 1667.57 1419.93 TRUE FALSE FALSE 1407.374432 1893.183469 1571.217967 1602.474805 1662.91987 1527.528432 1487.533905 1923.572423 1598.832059 1411.484193 0.99708834 1.341271463 1.113167242 1.135311903 1.178135666 1.082214338 1.053879252 1.36280125 1.132731111 1 10.46299726 -7.390742771 23.73519835 0.998618316 1.16791769 0.227976519 0.10513658 6.336341985 1152.139799 0.015280796 0.017474194 4.07E-08 7.390742771 0.169299374 SLS(ph)SDPR ddPTM_HeLa_CUDC101_4h_R1 1 SLSSDPR 7 0 F5H3X8;E9PFI7;Q8N3A8-2;Q8N3A8 F5H3X8 PARP8 Poly [ADP-ribose] polymerase 8 1 0 S(0.007)LS(0.639)S(0.354)DPR 83.753 0.040551 3840500 7867.2 3618.1 5505.4 5430.7 4037 4200.2 6269.5 6219 6292.7 7197 TRUE FALSE FALSE 6945.018742 3729.569372 5803.038577 5652.187419 3739.198553 4120.088183 6511.316715 6926.945822 6033.312243 7154.191924 0.970762151 0.521312457 0.81113823 0.790052529 0.522658407 0.57589847 0.910140067 0.968235951 0.843325467 1 12.80457311 -7.390597256 8.985058867 0.987096886 0.727368334 0.269847052 0.151838013 0.240472717 16.42124491 0.025246358 0.028824706 4.07E-08 7.390597256 -0.259728552 SYS(ph)PDGKESPSDKK ddPTM_HeLa_CUDC101_4h_R1 1 SYSPDGKESPSDKK 14 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 S(0.03)YS(0.968)PDGKES(0.003)PSDKK 141.85 0.0032414 14971000 2231.6 2325.6 2139.6 2263.6 2661.4 2078.2 2008.3 2308.8 2149.5 1846.8 TRUE FALSE FALSE 1970.015231 2397.248979 2255.273248 2355.919392 2465.073824 2038.561798 2085.760804 2571.62446 2060.8967 1835.815151 1.073101085 1.305822636 1.228486019 1.2833097 1.342767992 1.110439576 1.136149684 1.40080795 1.12260578 1 10.84220509 -7.39059082 4.018023564 1.030975547 1.250705237 0.489876774 0.088589415 0.119377911 3.224697365 0.014774803 0.016737871 4.07E-08 7.39059082 0.21972969 ARSMDS(ph)SDLSDGAVTLQEYLELKK ddPTM_HeLa_CUDC101_4h_R1 1 ARSMDSSDLSDGAVTLQEYLELKK 24 2 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 ARS(0.116)MDS(0.395)S(0.395)DLS(0.093)DGAVT(0.001)LQEYLELKK 79.9 0.00053443 12132000 975.54 1089.9 891.41 1097.3 1101 1136.7 1102.5 933.83 985.72 779.34 TRUE FALSE FALSE 861.18868 1123.478527 939.602321 1142.052637 1019.781424 1115.019341 1145.023794 1040.133433 945.0882044 774.704451 1.111635126 1.450202752 1.212852617 1.474178489 1.316348992 1.43928351 1.478013703 1.342619668 1.219933877 1 9.597502218 -7.390139328 1.034742206 1.027042596 1.404349358 0.537688097 0.106503767 0.141339295 0.301113524 0.018095549 0.02017457 4.07E-08 7.390139328 0.377306762 KLCQPQSTGSLLGDPAAS(ph)SPPGER ddPTM_HeLa_CUDC101_4h_R1 2 KLCQPQSTGSLLGDPAASSPPGER 24 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 1 0 KLCQPQSTGSLLGDPAAS(0.84)S(0.16)PPGER;KLCQPQSTGSLLGDPAAS(0.84)S(0.16)PPGER ; 174.36 1.62E-11 58029000 3992.1 4734.6 4191.6 4407.1 4594.8 4630.6 4518.1 4613.6 4180.2 3076.9 TRUE FALSE FALSE 3524.15209 4880.467414 4418.210575 4586.840587 4255.850758 4542.27902 4692.36463 5138.793575 4007.890387 3058.598462 1.152211424 1.595654832 1.444521283 1.499654382 1.391438206 1.485085106 1.534155166 1.68011383 1.310368274 1 11.578655 -7.389939435 3.539334923 1.063449531 1.509537611 0.673481218 0.111760472 0.065525151 1.451440757 0.015895161 0.01799604 4.07E-08 7.389939435 0.446088079 GGT(ph)MT(ph)DLDEQEDES(ph)MET(ph)TGK ddPTM_HeLa_CUDC101_4h_R1 1 GGTMTDLDEQEDESMETTGK 20 0 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 4 0 GGT(1)MT(1)DLDEQEDES(0.978)MET(0.812)T(0.21)GK 45.221 0.0032357 0 1174.7 919.54 770.76 934.75 1122.2 1103.8 824.63 963.3 1366 1074.7 TRUE FALSE FALSE 1037.003447 947.8699375 812.429617 972.8731453 1039.417542 1082.746854 856.4362553 1072.958178 1309.692902 1068.307637 0.970697401 0.887263093 0.760482832 0.910667594 0.972957139 1.013515973 0.801675684 1.004353186 1.225951081 1 10.06111144 -7.389699473 4.196263832 0.987454239 0.904521039 0.230114998 0.107379242 0.28257534 8.133818157 0.013319948 0.015097497 4.08E-08 7.389699473 -0.082933199 RFPEAEALS(ph)PEQAAHYLR ddPTM_HeLa_CUDC101_4h_R1 1 RFPEAEALSPEQAAHYLR 18 1 Q2NKX8 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 RFPEAEALS(1)PEQAAHYLR 66.289 0.038123 6338100 2596.6 2734.4 2514.8 2361.8 2880.3 2825 2612.8 1973 3007 2217.8 TRUE FALSE FALSE 2292.230484 2818.643623 2650.757695 2458.124413 2667.826007 2771.117832 2713.576571 2197.598345 2883.050187 2204.608427 1.039744953 1.278523473 1.202371207 1.114993657 1.210113313 1.256965998 1.230865553 0.99682026 1.307737987 1 11.10630672 -7.389414434 6.182272767 1.01740336 1.187692786 0 0.119191716 0.133992834 6.202369016 0.012652101 0.014401566 4.08E-08 7.389414434 0.170289426 CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVK ddPTM_HeLa_CUDC101_4h_R1 5 CGSGPVHISGQHLVAVEEDAESEDEEEEDVK 31 0 P06748;P06748-2;P06748-3;E5RI98 P06748 NPM1 Nucleophosmin 1 0 CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK ;;;; 157.55 6.00E-17 1085752600 24746.4 17753.7 15977 15860.3 22663.2 21763 20467.9 19532 25162.2 22686.3 TRUE FALSE FALSE 21845.66451 18300.67045 16840.76495 16507.15159 20991.38089 21347.90703 21257.35376 21755.44393 24125.00347 22551.36088 0.968707149 0.811510691 0.746773777 0.731980286 0.930825461 0.946634979 0.942619555 0.964706478 1.069780382 1 14.46092688 -7.388373502 5.678792111 0.986338607 0.866544447 0.380816328 0.082875023 0.222474188 9.382964783 0.015167294 0.017249477 4.09E-08 7.388373502 -0.11979416 AENGERS(ph)DLEEDNER ddPTM_HeLa_CUDC101_4h_R1 2 AENGERSDLEEDNER 15 1 Q8WU90 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 1 0 AENGERS(1)DLEEDNER;AENGERS(1)DLEEDNER ; 95.755 0.0043096 72896000 4544.3 3644 3129 3269.9 3270.2 3245.4 3530.7 3808.8 4151.4 4409.8 TRUE FALSE FALSE 4011.624043 3756.267321 3298.163205 3403.260656 3028.963861 3183.499402 3666.880282 4242.378396 3980.277535 4383.570313 0.915149925 0.856896788 0.752391993 0.776367302 0.690981014 0.726234365 0.83650541 0.967790658 0.907999017 1 12.09789067 -7.387334611 1.20827906 0.973024694 0.785417067 0.426954699 0.075427198 0.242069529 0.692414551 0.016217622 0.018202288 4.10E-08 7.387334611 -0.187607627 VQGS(ph)DSDEEVVVATTR ddPTM_HeLa_CUDC101_4h_R1 1 VQGSDSDEEVVVATTR 16 0 P26640;A0A140T936;P26640-2 P26640 VARS Valine--tRNA ligase 1 0 VQGS(0.895)DS(0.105)DEEVVVATTR 138.75 0.00035354 4022600 608.46 357.87 363.13 266.57 391.79 565.67 406.53 481.74 509.04 588.72 TRUE FALSE FALSE 537.1372412 368.8955505 382.7619062 277.4418768 362.8884323 554.8807872 422.2099983 536.5793343 488.0571557 585.2182673 0.917840866 0.630355495 0.654049827 0.474082735 0.620090747 0.948160401 0.721457312 0.916887535 0.833974575 1 9.192830993 -7.386443655 4.441309663 0.964755954 0.704789932 0.307577828 0.138612013 0.1629454 5.08775304 0.024300974 0.027571125 4.11E-08 7.386443655 -0.259966021 DVPGGGPSSSAPAGAEADGPKAS(ph)PEAR ddPTM_HeLa_CUDC101_4h_R1 1 DVPGGGPSSSAPAGAEADGPKASPEAR 27 1 Q8N3F8;B0QY86 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 DVPGGGPSS(0.001)S(0.02)APAGAEADGPKAS(0.979)PEAR 108.5 4.12E-08 5792500 2659.6 1924.6 1708.7 1502.1 1708 1521.7 1648.1 1300.2 1937.8 2904.9 TRUE FALSE FALSE 2347.84572 1983.894645 1801.077491 1563.362131 1582.004243 1492.676108 1711.667769 1448.209512 1857.923064 2887.621526 0.813072523 0.687034165 0.62372353 0.541401329 0.5478572 0.516922351 0.592760427 0.501523312 0.64340948 1 11.49566595 -7.385506203 0.575304806 0.977561003 0.518320876 0.461432053 0.107944533 0.089166697 0.067474385 0.012583716 0.01352499 4.12E-08 7.385506203 -0.459240128 SDAGLES(ph)DTAMKK ddPTM_HeLa_CUDC101_4h_R1 1 SDAGLESDTAMKK 13 1 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 SDAGLES(0.997)DT(0.003)AMKK 190.37 4.16E-11 9922500 2069.4 2082.4 2087.8 1763.5 2065.4 1925.1 2261 1738.2 1570.4 1773.4 TRUE FALSE FALSE 1826.828069 2146.556276 2200.672783 1835.423152 1913.039557 1888.381925 2348.207527 1936.069662 1505.667447 1762.851738 1.036291385 1.217661264 1.248359539 1.041167055 1.085195945 1.07120859 1.332050493 1.098260064 0.85410895 1 10.78369543 -7.385096958 5.596977572 1.015844024 1.155871344 0.415682613 0.099287897 0.183905684 7.662576784 0.014705684 0.016725178 4.12E-08 7.385096958 0.14002732 HSLLLSS(ph)SPNR ddPTM_HeLa_CUDC101_4h_R1 1 HSLLLSSSPNR 11 0 G1UD79;Q7Z309-3;Q7Z309-4 G1UD79 SPACIA2;FAM122B Protein FAM122B 1 0 HSLLLS(0.144)S(0.548)S(0.308)PNR 80.905 0.0031654 0 3161.3 2114.1 1733.7 2176.1 2323.4 2665.4 2319.5 1842.5 2496.8 3078.1 TRUE FALSE FALSE 2790.737206 2179.232915 1827.429066 2264.850764 2152.007411 2614.561936 2408.963892 2052.242752 2393.880847 3059.791324 0.912067821 0.712216189 0.59723977 0.740197786 0.703318358 0.854490277 0.787296791 0.670713305 0.782367356 1 11.57921755 -7.38368684 3.112271724 0.96374875 0.725862279 0.41026577 0.087117423 0.104895995 1.864441007 0.012953125 0.014686736 4.13E-08 7.38368684 -0.237886471 YS(ph)PPAISPLVSEK ddPTM_HeLa_CUDC101_4h_R1 2 YSPPAISPLVSEK 13 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 Y(0.118)S(0.882)PPAISPLVSEK;Y(0.004)S(0.996)PPAISPLVSEK ; 109.07 0.0048961 117490000 7402.2 5845.7 5034 5815.6 5866.5 6061 5330.9 4299.3 5881.8 7278.3 TRUE FALSE FALSE 6534.525337 6025.799088 5306.153267 6052.785305 5433.739983 5945.396523 5536.514599 4788.714934 5639.349714 7235.008348 0.903181451 0.832866916 0.733399744 0.836596865 0.751034376 0.821753927 0.765239559 0.661881052 0.779453104 1 12.82077897 -7.382202102 0.363507788 1.015886146 0.719823417 0.158758722 0.082215568 0.342060246 0.132039919 0.033626176 0.034710408 4.15E-08 7.382202102 -0.29606273 LVGILY(ph)LNES(ph)GT(ph)MLR ddPTM_HeLa_CUDC101_4h_R1 1 LVGILYLNESGTMLR 15 0 Q96B77 Q96B77 TMEM186 Transmembrane protein 186 3 0 LVGILY(1)LNES(1)GT(1)MLR 55.806 0.028337 12410000 1697.7 1963 1767.3 1724.3 1725.9 1671.7 1749.9 1911.2 1806.7 1437.4 TRUE FALSE FALSE 1498.69818 2023.477703 1862.845584 1794.624407 1598.583795 1639.815108 1817.394229 2128.763283 1732.227061 1428.850281 1.048883987 1.416157963 1.303737424 1.25599192 1.118790273 1.147646559 1.271927684 1.489843485 1.212322302 1 10.48063904 -7.381220489 6.669974132 1.021523636 1.273120545 0.324470904 0.12053997 0.138208623 7.061925355 0.018587825 0.021179213 4.16E-08 7.381220489 0.251596909 FTGS(ph)FDDDPDPHRDPYGEEVDR ddPTM_HeLa_CUDC101_4h_R1 2 FTGSFDDDPDPHRDPYGEEVDR 22 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 FT(0.196)GS(0.804)FDDDPDPHRDPYGEEVDR;FT(0.068)GS(0.932)FDDDPDPHRDPYGEEVDR ; 101.92 5.23E-05 14427500 3671.1 2626.1 2451.1 2862.4 2451 2715.5 2495.4 1800.78 3104.3 3799.5 TRUE FALSE FALSE 3240.779223 2707.007028 2583.61388 2979.141044 2270.194613 2663.706362 2591.648414 2005.773516 2976.33944 3776.900405 0.858052603 0.716727141 0.684056661 0.788779349 0.601073465 0.705262537 0.686183943 0.531063386 0.788037576 1 11.88298703 -7.379994523 0.339275454 1.029600568 0.589683133 0.50648861 0.087963591 0.327364887 0.115364216 0.048684617 0.050088645 4.17E-08 7.379994523 -0.439917435 GAVY(ph)S(ph)SPLY(ph)QYLQEK ddPTM_HeLa_CUDC101_4h_R1 1 GAVYSSPLYQYLQEK 15 0 Q5QJ38 Q5QJ38 TCHHL1 Trichohyalin-like protein 1 3 0 GAVY(0.968)S(0.813)S(0.219)PLY(0.999)QY(0.001)LQEK 80.102 0.010508 11614000 2190 1640.9 1621.6 1601.2 1721.1 1876.8 1796.3 1445.6 1475.4 2039.1 TRUE FALSE FALSE 1933.29152 1691.454184 1709.268601 1666.503857 1594.137882 1841.003167 1865.583893 1610.161261 1414.583388 2026.971343 0.953783351 0.834473655 0.843262342 0.822164488 0.78646296 0.90825318 0.920380004 0.794368044 0.697880309 1 10.98510998 -7.37894995 2.970153367 0.98119052 0.84608981 0 0.098663659 0.113684208 1.857722195 0.007820407 0.008880106 4.18E-08 7.37894995 -0.135100711 PDRSRAARPT(ph)MDPS(ph)AHR ddPTM_HeLa_CUDC101_4h_R1 1 PDRSRAARPTMDPSAHR 17 3 D6RHY5;Q96AX9-9;Q96AX9-4;Q96AX9-6;Q96AX9-5;Q96AX9-12;Q96AX9-3;Q96AX9;Q96AX9-13;Q96AX9-14 D6RHY5 MIB2 E3 ubiquitin-protein ligase MIB2 2 0 PDRSRAARPT(1)MDPS(1)AHR 59.261 0.0030232 0 1582 1049.3 1103.2 1018.6 1204.6 1229.8 889.22 959.6 1456.4 1536.4 TRUE FALSE FALSE 1396.560358 1081.627689 1162.842329 1060.142911 1115.739058 1206.343614 923.5175133 1068.836985 1396.366576 1527.261424 0.914421288 0.708213847 0.761390493 0.694146329 0.730548837 0.789873688 0.604688561 0.69983892 0.914294405 1 10.57673132 -7.378623829 1.453192231 0.972480567 0.706396526 0.788263862 0.053868167 0.101559782 0.414480641 0.010302799 0.011656847 4.18E-08 7.378623829 -0.266084041 EQGTGNSYTDTSGPKETSSAT(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 1 EQGTGNSYTDTSGPKETSSATPGR 24 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 EQGTGNSYTDTSGPKET(0.006)S(0.017)S(0.039)AT(0.937)PGR 69.79 0.00094087 6926000 522.21 722.7 605 625.42 864.54 686.63 635 686.26 489.45 366.57 TRUE FALSE FALSE 460.9973354 744.9655304 637.70813 650.9273309 800.7646066 673.5336768 659.4921627 764.3810644 469.2746638 364.3896253 1.265122011 2.044420254 1.750072136 1.786349791 2.197550509 1.84838873 1.809854389 2.0977026 1.287837609 1 8.509338074 -7.378562468 3.304238317 1.109523897 1.924218553 0.826781568 0.156648398 0.064849505 1.284509024 0.028008576 0.031798874 4.18E-08 7.378562468 0.814694656 NYGSPLISGS(ph)TPK ddPTM_HeLa_CUDC101_4h_R1 1 NYGSPLISGSTPK 13 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 NYGSPLIS(0.141)GS(0.43)T(0.43)PK 96.464 0.012018 35948000 4046.8 3089.5 3023.8 2727.1 3425.4 3505.2 3476.9 3429.2 3572 3673.3 TRUE FALSE FALSE 3572.440239 3184.683833 3187.275774 2838.322926 3172.715066 3438.34415 3611.005198 3819.566267 3424.760648 3651.451048 0.978361805 0.87216939 0.872879229 0.7773137 0.868891579 0.94163775 0.988923349 1.046040661 0.937917722 1 11.83425417 -7.37822015 5.446312726 0.990548331 0.90605092 0.123447047 0.071304514 0.269114781 11.03291905 0.013065096 0.014862023 4.19E-08 7.37822015 -0.084497411 EVS(ph)PEVVR ddPTM_HeLa_CUDC101_4h_R1 5 EVSPEVVR 8 0 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR ;;;; 135.86 0.0022882 945238300 27288.1 25090.8 24661.4 24758.1 26465.3 24019.5 23164.2 23749.5 25390.1 24102.7 TRUE FALSE FALSE 24089.43028 25863.81781 25994.66988 25767.84233 24513.00755 23561.36806 24057.65095 26453.04708 24343.50933 23959.33607 1.005429792 1.079488085 1.084949508 1.07548232 1.023108799 0.983389856 1.004103406 1.104080973 1.016034387 1 14.54830031 -7.377974191 8.218158738 1.002404992 1.047459941 0.225511622 0.036323684 0.325453322 21.15030956 0.006538171 0.007461578 4.19E-08 7.377974191 0.045054949 GEIQGLVS(ph)ALQEVR ddPTM_HeLa_CUDC101_4h_R1 2 GEIQGLVSALQEVR 14 0 A0A590UK13 A0A590UK13 1 0 GEIQGLVS(1)ALQEVR;GEIQGLVS(1)ALQEVR ; 71.558 0.027718 92268000 3201.1 3605.2 3753.4 3090.6 4888.6 3501.3 3897.3 3920.3 3886.6 2270.92 TRUE FALSE FALSE 2825.871911 3716.271939 3956.320157 3216.648027 4527.977717 3434.518536 4047.620167 4366.571106 3726.392703 2257.412467 1.251819042 1.646252953 1.752590727 1.424927023 2.005826487 1.521440404 1.793035268 1.934325769 1.6507363 1 11.14045433 -7.377684484 0.697425215 1.038050769 1.782517815 0.246658521 0.254495854 0.197172346 0.205332668 0.045318941 0.04979295 4.19E-08 7.377684484 0.744467045 NHSDSSTSESEVSSVS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 3 NHSDSSTSESEVSSVSPLK 19 0 Q9NY27-2;Q9NY27-3;Q9NY27;H7C559;C9IZ04 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 1 0 NHSDSSTSESEVS(0.004)S(0.387)VS(0.609)PLK;NHSDSSTSESEVS(0.003)S(0.102)VS(0.895)PLK;NHSDSSTSESEVS(0.002)S(0.405)VS(0.593)PLK ;; 260.08 1.14E-70 56673600 12941.2 4191.81 4143.03 4022.05 11531.5 9794.9 8437.2 6008.8 11453.7 12408.8 TRUE FALSE FALSE 11424.25215 4320.954698 4367.014734 4186.086584 10680.84422 9608.078602 8762.62563 6692.817504 10981.57364 12334.99191 0.926166165 0.35030057 0.354034666 0.339366788 0.865897951 0.778928651 0.710387627 0.542587912 0.890278139 1 13.59046915 -7.37767566 6.724451149 0.967432132 0.572597071 0.489185463 0.175385124 0.156143856 8.160153731 0.032769195 0.037343654 4.19E-08 7.37767566 -0.394835061 SFSLEGLTGGAGVGNKPSSS(ph)LEVSSANAEELR ddPTM_HeLa_CUDC101_4h_R1 1 SFSLEGLTGGAGVGNKPSSSLEVSSANAEELR 32 1 Q12802-4;Q12802;Q12802-2;A0A087WTD7;A8MYJ1;A0A087WY36;H0YMW2;H0YLH1 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 S(0.019)FS(0.176)LEGLT(0.011)GGAGVGNKPS(0.193)S(0.193)S(0.348)LEVS(0.029)S(0.029)ANAEELR 49.088 0.01175 27684000 798.56 489.71 509.63 564.77 582.83 563.77 487.07 417.41 510.55 781.82 TRUE FALSE FALSE 704.9540073 504.7973847 537.1821393 587.8037617 539.8357921 553.0170266 505.8564531 464.9262672 489.5049129 777.1696999 0.907078605 0.649533023 0.691203143 0.75633901 0.694617652 0.711578213 0.650895748 0.598230048 0.62985589 1 9.602085844 -7.377613897 3.210052231 0.961709438 0.682629245 0.130024628 0.11353227 0.062263922 1.172305039 0.009112884 0.010349469 4.19E-08 7.377613897 -0.279080193 APQTS(ph)SS(ph)PPPVR ddPTM_HeLa_CUDC101_4h_R1 1 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 APQT(0.153)S(0.819)S(0.342)S(0.686)PPPVR 123.26 0.027176 107240000 3126 2416.7 2427.4 2580.1 2403.3 2290.5 2293.5 2907.4 2579.3 2874.3 TRUE FALSE FALSE 2759.575019 2491.155663 2558.632586 2685.32763 2226.013347 2246.812529 2381.961063 3238.366664 2472.980162 2857.203536 0.965830745 0.871885965 0.895502387 0.939844711 0.779088126 0.786367685 0.833668667 1.133404262 0.865524675 1 11.4803881 -7.377578097 2.91626615 0.986184551 0.882460372 0 0.101917461 0.316676934 5.003538358 0.016598143 0.018856062 4.19E-08 7.377578097 -0.103724179 ARPATDS(ph)FDDYPPR ddPTM_HeLa_CUDC101_4h_R1 3 ARPATDSFDDYPPR 14 1 E7EX17;P23588-2;P23588;F8VP89;F8W0K0;F8VSC7 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 ARPAT(0.013)DS(0.987)FDDYPPR;ARPATDS(1)FDDYPPR;ARPAT(0.019)DS(0.98)FDDY(0.001)PPR ;; 118.72 0.00016747 25712700 7048.8 5153.1 4922 5298.25 5725.3 5872.6 5633.7 5557.4 5715.1 6470.4 TRUE FALSE FALSE 6222.550349 5311.860903 5188.098208 5514.335536 5302.956025 5760.589939 5850.993696 6190.031952 5479.521159 6431.913773 0.96744928 0.825860092 0.806618122 0.85733978 0.824475609 0.895626114 0.909681613 0.962393491 0.851927024 1 12.65103235 -7.377426104 5.101781269 0.985834731 0.867139877 0.105850641 0.061014086 0.119856406 4.547601707 0.008230156 0.009357738 4.19E-08 7.377426104 -0.118694855 DKENGNNS(ph)PLPK ddPTM_HeLa_CUDC101_4h_R1 1 DKENGNNSPLPK 12 1 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B 1 0 DKENGNNS(1)PLPK 69.045 0.032623 70400000 5623.3 4510.7 4881.4 4478.6 4731.5 4505 4804.7 3962.1 5090.9 5291.2 TRUE FALSE FALSE 4964.145298 4649.669321 5145.303249 4661.256666 4382.466671 4419.074631 4990.018888 4413.129449 4881.050947 5259.727707 0.943802717 0.884013314 0.978245175 0.886216345 0.833211701 0.84017175 0.948721905 0.839041428 0.928004494 1 12.3607724 -7.376950797 0.385493525 1.002679983 0.861472203 0.33617656 0.04661758 0.587814924 0.245502314 0.02705397 0.028203864 4.20E-08 7.376950797 -0.14120778 AAPSTAPAEAT(ph)PPKPGEAEAPPKHPGVLK ddPTM_HeLa_CUDC101_4h_R1 1 AAPSTAPAEATPPKPGEAEAPPKHPGVLK 29 2 O95817 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 AAPST(0.002)APAEAT(0.998)PPKPGEAEAPPKHPGVLK 101.3 4.18E-09 89813000 3377.3 3266 3409 3476.5 3657.7 3299.8 3126.9 3127.1 3291.9 2775 TRUE FALSE FALSE 2981.418014 3366.621589 3593.300852 3618.286697 3387.878758 3236.861813 3247.50558 3483.076424 3156.206489 2758.494177 1.080813597 1.220456297 1.302631299 1.311689083 1.228162375 1.173416221 1.177274764 1.262673111 1.144177325 1 11.42966522 -7.375754607 2.188728602 1.031207584 1.241338868 0.62032448 0.057048098 0.104167899 0.94736424 0.009827753 0.011174942 4.21E-08 7.375754607 0.210131284 LSEGSQPAEEEEDQET(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 2 LSEGSQPAEEEEDQETPSR 19 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 LSEGSQPAEEEEDQET(0.997)PS(0.003)R;LSEGSQPAEEEEDQET(0.976)PS(0.024)R ; 326.12 2.46E-167 27762000 3309.1 2649.85 2350.61 2386.09 2931.4 2850.5 2873.61 2255.66 2952 3079.4 TRUE FALSE FALSE 2921.212314 2731.488738 2477.691087 2483.405064 2715.156462 2796.131462 2984.4461 2512.435217 2830.317311 3061.083592 0.954306613 0.892327392 0.809416343 0.811282995 0.886991936 0.913444987 0.974963934 0.820766615 0.924612878 1 11.57982673 -7.375701639 2.227458547 0.982100424 0.873058501 0.363092039 0.051673313 0.195069304 1.836027396 0.009619385 0.010938579 4.21E-08 7.375701639 -0.109041923 DGGS(ph)GNSTIIVSR ddPTM_HeLa_CUDC101_4h_R1 1 DGGSGNSTIIVSR 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 DGGS(0.984)GNS(0.012)T(0.004)IIVSR 83.856 0.02571 118970000 1114.2 835.84 674.1 511.45 1051.9 1007.5 846.05 882.63 913.54 1067.6 TRUE FALSE FALSE 983.595165 861.5912397 710.543885 532.3091417 974.3034327 988.2836161 878.6824319 983.1050315 875.8834945 1061.249868 0.926827126 0.811864638 0.669534957 0.501587004 0.918071665 0.931244984 0.827969415 0.926365281 0.825332018 1 10.05154866 -7.375454779 2.589841236 0.970446687 0.791821037 0.115789994 0.132774784 0.282575501 3.565057176 0.024290564 0.027622574 4.21E-08 7.375454779 -0.178625649 RS(ph)YDVPPPPMEPDHPFYSNISK ddPTM_HeLa_CUDC101_4h_R1 5 RSYDVPPPPMEPDHPFYSNISK 22 1 P18669;Q8N0Y7 P18669 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 1 0 RS(0.552)Y(0.448)DVPPPPMEPDHPFYSNISK;RS(0.553)Y(0.447)DVPPPPMEPDHPFYSNISK;RS(0.771)Y(0.229)DVPPPPMEPDHPFYSNISK;RS(1)YDVPPPPMEPDHPFYSNISK;RS(0.554)Y(0.446)DVPPPPMEPDHPFYSNISK ;;;; 116.99 1.77E-06 86414000 12004.9 9899.2 9238.5 8177 11777.7 10662 9934.7 10102.6 10502.8 10896.8 TRUE FALSE FALSE 10597.70382 10204.18262 9737.961255 8510.493404 10908.88254 10458.64011 10317.88471 11252.63915 10069.87014 10831.98535 0.978371321 0.942041767 0.899000593 0.785681768 1.007099085 0.965533074 0.952538651 1.038834414 0.929642149 1 13.40301007 -7.374470083 2.773095566 0.991155966 0.937603889 0.00547965 0.06673691 0.443973691 6.384335045 0.011762637 0.013377895 4.22E-08 7.374470083 -0.053552077 GSSSQAPASK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 GSSSQAPASKK 11 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 0 1 ; GSSSQAPASK(1)K;GSSSQAPASK(1)K 143.79 0.00014992 975870 601.64 140.04 677.21 886.63 316.52 591.47 529.27 310.09 839.02 727.79 FALSE TRUE FALSE 531.1166712 144.3544664 713.822021 922.7906037 293.1709502 580.1886952 549.6841212 345.3893922 804.4352405 723.4610727 0.734133033 0.19953315 0.986676475 1.275522124 0.405233898 0.801962562 0.759797786 0.477412545 1.111926088 1 9.498771581 -8.896735434 0.968709299 0.984997032 0.717527818 0.177728114 0.289400046 0.853094035 1.561767915 0.136164473 0.055206873 1.27E-09 8.896735434 -0.267469214 SAGGSS(ph)PEGGEDS(ph)DREDGNYCPPVKR ddPTM_HeLa_CUDC101_4h_R1 1 SAGGSSPEGGEDSDREDGNYCPPVKR 26 2 B7Z7F3;Q9H6Z4-3;Q9H6Z4-2;Q9H6Z4;K7EID7;K7ENB9 B7Z7F3 RANBP3 Ran-binding protein 3 2 0 S(0.002)AGGS(0.204)S(0.801)PEGGEDS(0.991)DREDGNY(0.003)CPPVKR 64.542 0.013473 47635000 2022.1 2149.4 2061.2 2097.4 2301.6 2034.9 1617.8 2038.4 1937.1 1709.6 TRUE FALSE FALSE 1785.072503 2215.620466 2172.634707 2182.941038 2131.815553 1996.087673 1680.199088 2270.443217 1857.251918 1699.431223 1.050394084 1.303742356 1.278448152 1.284512729 1.254428849 1.174562198 0.988683193 1.336001826 1.092866774 1 10.73083626 -7.374446276 5.4700951 1.022044256 1.224317042 0.434082487 0.094885909 0.139708443 5.828477124 0.016241533 0.018480672 4.22E-08 7.374446276 0.202272786 RPAS(ph)VSSSAAVEHEQR ddPTM_HeLa_CUDC101_4h_R1 3 RPASVSSSAAVEHEQR 16 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 RPAS(0.977)VS(0.021)S(0.002)SAAVEHEQR;RPAS(0.996)VS(0.004)S(0.001)SAAVEHEQR;RPAS(0.974)VS(0.019)S(0.006)S(0.001)AAVEHEQR ;; 129.75 0.00025841 289151000 3977.54 2444.24 2863.96 2383.36 3020.55 2367.58 2916.1 3697.89 3617.08 3690.9 TRUE FALSE FALSE 3511.298791 2519.544137 3018.794341 2480.563723 2797.730044 2322.422356 3028.574954 4118.84285 3467.982431 3668.946363 0.957031922 0.686721442 0.822795986 0.676097026 0.762543185 0.63299436 0.825461769 1.122622803 0.94522571 1 11.8411501 -7.374148272 6.068311773 0.98110469 0.781383187 0.284905199 0.128208113 0.193507678 9.142464815 0.021596675 0.02459414 4.23E-08 7.374148272 -0.199721503 GSTDNLMDDIER ddPTM_HeLa_CUDC101_4h_R1 6 GSTDNLMDDIER 12 0 P50990-3;P50990-2;P50990 P50990-3 CCT8 T-complex protein 1 subunit theta 0 0 ;;;;; ;;;;; 234.39 3.55E-42 88595000 11675.24 9541.19 9988.51 9250.79 11071.53 10071.46 9530.97 10877.41 10398.6 11045.22 FALSE FALSE TRUE 10306.68607 9835.142755 10528.51906 9628.077202 10254.80529 9879.363681 9898.582706 12115.65039 9969.965307 10979.52254 0.938718968 0.895771444 0.958923216 0.876912194 0.933993737 0.899799025 0.901549468 1.103476981 0.908050898 1 13.4225277 -8.88409867 0.847499115 0.998075159 0.933689526 0 0.066410044 0.843826931 1.161309139 0.031319262 0.011513481 1.31E-09 8.88409867 -0.064385633 GTSPRPPEGGLGYSQLGDDDLKET(ph)GFHLTTTNQGASAAGPGFSLK ddPTM_HeLa_CUDC101_4h_R1 1 GTSPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLK 45 2 P21127;P21127-8;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-9;P21127-2;P21127-3;P21127-6;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 GT(0.084)S(0.088)PRPPEGGLGY(0.081)S(0.084)QLGDDDLKET(0.46)GFHLT(0.091)T(0.091)T(0.02)NQGAS(0.001)AAGPGFSLK 45.084 0.0038136 28472000 3037.9 1392.7 1150.8 1130.5 3480.6 2240.2 2473 2044.5 2390.6 2720.4 TRUE FALSE FALSE 2681.801967 1435.607436 1213.015729 1176.606676 3223.843072 2197.471917 2568.384438 2277.237616 2292.058456 2704.21894 0.991710371 0.530876925 0.448564172 0.435100376 1.19215313 0.81260873 0.949769414 0.84210549 0.847586126 1 11.40099624 -7.371660244 11.74632279 0.996314222 0.748941754 0.133244169 0.22536969 0.731844721 74.23143851 0.039849936 0.045546721 4.25E-08 7.371660244 -0.247372468 GSTEGSESYEEDPYLVVNPNYLLED ddPTM_HeLa_CUDC101_4h_R1 4 GSTEGSESYEEDPYLVVNPNYLLED 25 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 0 ;;; ;;; 143.33 1.24E-10 15479600 8676.1 8240.1 6860.9 6763.5 9135.9 8340.1 7354.6 7117 8045.5 9309 FALSE FALSE TRUE 7659.10071 8493.967714 7231.821007 7039.344764 8461.962858 8181.026488 7638.269386 7927.170512 7713.861085 9253.629654 0.827686108 0.917906598 0.781511826 0.760711745 0.914447971 0.884088384 0.825434956 0.856655259 0.833603826 1 13.17580365 -9.293530178 0.742002382 1.013915656 0.843921243 0 0.070654681 0.479205755 0.41110405 0.050972956 0.010055016 5.09E-10 9.293530178 -0.169994413 KPGDGEVSPSTEDAPFQHS(ph)PLGK ddPTM_HeLa_CUDC101_4h_R1 2 KPGDGEVSPSTEDAPFQHSPLGK 23 1 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 0 KPGDGEVS(0.001)PS(0.002)T(0.006)EDAPFQHS(0.991)PLGK;KPGDGEVSPSTEDAPFQHS(1)PLGK ; 96.379 0.00018413 21662700 6830.6 6017.3 4636.8 4338.16 5383.2 5046.3 4353.4 3959.71 6792.4 7306.6 TRUE FALSE FALSE 6029.927423 6202.685881 4887.479434 4515.088916 4986.092061 4950.050235 4521.312096 4410.467381 6512.414397 7263.140018 0.830209442 0.853995085 0.672915491 0.621644207 0.686492626 0.681530333 0.622501024 0.607239757 0.896638972 1 12.82637768 -7.371276347 0.372194001 1.01024062 0.594018845 0.84854045 0.050586336 0.234655698 0.093396885 0.03202523 0.033465127 4.25E-08 7.371276347 -0.416221774 IYSFTDNAPS(ph)PSIGGSSR ddPTM_HeLa_CUDC101_4h_R1 2 IYSFTDNAPSPSIGGSSR 18 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 IYSFTDNAPS(1)PSIGGSSR;IYSFTDNAPS(0.993)PS(0.007)IGGSSR ; 180.32 1.39E-08 41059000 3697.6 2602 2415.2 2368.31 2470.28 2461.26 2626.8 2228.65 3043.6 3693.4 TRUE FALSE FALSE 3264.172933 2682.164536 2545.773018 2464.899919 2288.052366 2414.315566 2728.116556 2482.350507 2918.14152 3671.431493 0.889073632 0.730550071 0.693400659 0.671372984 0.623204429 0.657595156 0.743066175 0.676126059 0.794823906 1 11.84212696 -7.371123065 1.111742963 0.967922584 0.670512611 0.666452498 0.064231904 0.084062961 0.204623833 0.008623052 0.009727854 4.25E-08 7.371123065 -0.297409973 EFGSLPT(ph)TPSEQR ddPTM_HeLa_CUDC101_4h_R1 1 EFGSLPTTPSEQR 13 0 O15400-2;O15400 O15400-2 STX7 Syntaxin-7 1 0 EFGS(0.002)LPT(0.596)T(0.38)PS(0.022)EQR 110.64 0.02159 3603300 2003.5 1579.6 1591 1654 1435.9 1603.1 1516.2 1869.3 1676.9 1828.8 TRUE FALSE FALSE 1768.652767 1628.265604 1677.014273 1721.457269 1329.976518 1572.523538 1574.680342 2082.093556 1607.777472 1817.922216 0.972897933 0.895673967 0.922489564 0.946936703 0.731591542 0.865011453 0.866197865 1.145314985 0.884403886 1 10.82807476 -7.370878488 1.954938752 0.990213904 0.900670148 0 0.102589676 0.463668362 3.375929477 0.017764038 0.020226461 4.26E-08 7.370878488 -0.089543756 S(ph)LSDSESDDSK ddPTM_HeLa_CUDC101_4h_R1 1 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 S(0.882)LS(0.117)DSESDDSK 205.02 2.81E-17 119670000 4774 3400.4 3709.5 3856.7 3083.9 2719.6 2810.9 1308.2 4132.9 4435.5 TRUE FALSE FALSE 4214.398957 3505.162294 3910.046791 4013.992896 2856.406841 2667.728161 2919.317355 1457.1202 3962.540113 4409.117449 0.955837309 0.794980477 0.886809398 0.910384661 0.647840951 0.605048106 0.662109229 0.330478881 0.898715028 1 12.10627419 -4.333001086 0.370187501 0.997116013 3.59E-20 0.828757081 0.081188419 1.34475779 0.131800691 0.022548801 0.590986678 4.65E-05 4.333001086 -0.997116013 down GSVLPNSDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 GSVLPNSDKK 10 1 H0YF61;P22307-6;P22307-2;P22307-4;P22307-7;P22307-8;P22307 H0YF61 SCP2 Non-specific lipid-transfer protein 0 1 ; GSVLPNSDK(1)K;GSVLPNSDK(1)K 102.95 0.0092034 4621800 6394.5 4582.7 5279 4783.5 6950.5 6014.5 6439.7 5691.2 5956.8 5692 FALSE TRUE FALSE 5644.946403 4723.887555 5564.398708 4978.591806 6437.775462 5899.783433 6688.081386 6339.063203 5711.258183 5658.143731 0.997667552 0.834882919 0.983431841 0.879898434 1.137789312 1.042706533 1.182027482 1.120343262 1.009387257 1 12.46611311 -5.740079194 24.99911173 0.976478543 1.119523896 0.610516089 0.064538774 146.2572541 171172.7399 0.009505823 0.018997094 1.82E-06 5.740079194 0.143045354 LY(ph)QDSVLVHT(ph)RS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 LYQDSVLVHTRSK 13 1 A0A2R8YEX1;Q9C0B2 A0A2R8YEX1 CFAP74 Cilia- and flagella-associated protein 74 3 0 LY(1)QDS(0.503)VLVHT(0.593)RS(0.904)K 84.365 0.021117 22919000 1358.2 1629.9 1666.2 1351.1 1491.1 1671.2 1261.3 1024.5 1372.2 1170.8 TRUE FALSE FALSE 1198.993855 1680.115287 1756.279812 1406.203698 1381.104524 1639.324644 1309.948764 1141.124939 1315.637335 1163.83603 1.030208573 1.44360137 1.50904403 1.208248982 1.18668308 1.408552926 1.125544089 0.980486005 1.130431867 1 10.1846721 -7.370538518 8.083659885 1.013428103 1.26997008 0.276293695 0.1535846 0.22883845 15.3705652 0.026298475 0.030011639 4.26E-08 7.370538518 0.256541978 TSS(ph)DDES(ph)EEDEDDLLQR ddPTM_HeLa_CUDC101_4h_R1 2 TSSDDESEEDEDDLLQR 17 0 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 0 T(0.008)S(0.011)S(0.981)DDES(1)EEDEDDLLQR;TS(0.013)S(0.987)DDES(1)EEDEDDLLQR ; 226.74 4.75E-32 16664300 2408.8 1883.02 1702.08 1867.55 1790.71 1919.3 1578.45 1568.79 2106.5 2392.6 TRUE FALSE FALSE 2126.444116 1941.033614 1794.099593 1943.716761 1658.612891 1882.69255 1639.331345 1747.374712 2019.669178 2378.368709 0.894076729 0.816119724 0.754340396 0.81724787 0.697374164 0.791589859 0.689267118 0.734694627 0.849182539 1 11.21575667 -7.370275183 0.467774217 0.997942613 0.714311678 0.603213161 0.056638763 0.17509808 0.096176772 0.015459333 0.016505665 4.26E-08 7.370275183 -0.283630935 TSS(ph)IADEGTYTLDSILR ddPTM_HeLa_CUDC101_4h_R1 2 TSSIADEGTYTLDSILR 17 0 E7ERV5;A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3 E7ERV5 MYO5A Unconventional myosin-Va 1 0 T(0.021)S(0.002)S(0.978)IADEGTYTLDSILR;T(0.006)S(0.075)S(0.919)IADEGTYTLDSILR ; 281.68 2.06E-103 62054000 5242.1 3404.7 3433.3 3820.7 4545.1 4086.4 4015.1 3511.6 4030.9 4788 TRUE FALSE FALSE 4627.628985 3509.594771 3618.914583 3976.52466 4209.817028 4008.458728 4169.963752 3911.34635 3864.744596 4759.520763 0.972288853 0.737384066 0.760352725 0.835488457 0.884504394 0.842197971 0.876131014 0.821794156 0.812002886 1 12.2166006 -7.369435098 6.836174127 0.987725781 0.826066486 0.20501891 0.070420889 0.095311231 5.31233223 0.008074425 0.0092046 4.27E-08 7.369435098 -0.161659295 APVASPAALGS(ph)TATASPAAPAR ddPTM_HeLa_CUDC101_4h_R1 1 APVASPAALGSTATASPAAPAR 22 0 A0A0C4DFM2;Q6ZN55;Q6ZN55-2 A0A0C4DFM2 ZNF574 Zinc finger protein 574 1 0 APVASPAALGS(0.43)T(0.378)AT(0.11)AS(0.082)PAAPAR 158.44 7.99E-13 0 429.16 505.2 390.87 407.66 641.84 481.36 460.03 299.23 458.83 367.14 TRUE FALSE FALSE 378.8545154 520.7646132 412.0016145 424.2861369 594.4927419 472.17886 477.7735112 333.2931337 439.9168332 364.956235 1.038082047 1.426923459 1.128906907 1.162567169 1.628942555 1.293795844 1.309125494 0.913241375 1.20539613 1 8.511579658 -7.369213748 7.294117331 1.016896772 1.273332557 0.145009883 0.187224159 0.231298924 13.93227893 0.029519136 0.03366583 4.27E-08 7.369213748 0.256435785 TSEIEPKNS(ph)PEDLGLSLTGDSCK ddPTM_HeLa_CUDC101_4h_R1 2 TSEIEPKNSPEDLGLSLTGDSCK 23 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 TSEIEPKNS(0.993)PEDLGLS(0.003)LT(0.003)GDSCK;TSEIEPKNS(0.996)PEDLGLS(0.003)LT(0.001)GDSCK ; 85.884 0.00020518 517080000 6080.7 5866.2 6566.9 6570.2 9462.9 6989.4 7458.6 5829.3 7274.3 3930.3 TRUE FALSE FALSE 5367.929564 6046.930669 6921.926478 6838.161155 8764.84072 6856.08884 7746.2807 6492.883949 6974.450275 3906.922401 1.373953463 1.54774783 1.771708206 1.750267974 2.243413055 1.754856672 1.982706567 1.661892222 1.785151984 1 11.93181689 -7.368700995 0.64390211 1.065241686 1.922696108 0.251639746 0.275258433 0.183238099 0.166484621 0.047968874 0.05273174 4.28E-08 7.368700995 0.857454422 LS(ph)PQQAFPR ddPTM_HeLa_CUDC101_4h_R1 1 LSPQQAFPR 9 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 LS(1)PQQAFPR 93.839 0.023518 34638000 2835.4 3208.7 2303.8 3174.7 3605.2 3141.7 2548.9 2678.3 3046.6 2426.6 TRUE FALSE FALSE 2503.03871 3307.556244 2428.350397 3304.177988 3339.251579 3081.777307 2647.211927 2983.186846 2921.017858 2412.166475 1.037672456 1.371197336 1.006709289 1.369796829 1.384337115 1.277597271 1.097441638 1.236725109 1.210952017 1 11.23611376 -7.368486109 6.901727215 1.016688749 1.244617707 0.210530264 0.129928916 0.162001682 9.191200307 0.019207773 0.021898203 4.28E-08 7.368486109 0.227928958 LSYS(ph)DSDLKR ddPTM_HeLa_CUDC101_4h_R1 1 LSYSDSDLKR 10 1 A0A087WTF0;A2A3K4;A2A3K4-2 A0A087WTF0 PTPDC1 Protein tyrosine phosphatase domain-containing protein 1 1 0 LS(0.065)YS(0.858)DS(0.077)DLKR 65.234 0.039947 13318000 3345.3 2626.4 2425 2870.4 3119.2 2851.2 2708.8 2681.5 3070.5 2980.3 TRUE FALSE FALSE 2953.169005 2707.316271 2556.102835 2987.467319 2889.10283 2796.81811 2813.279323 2986.751121 2943.93269 2962.573043 0.996825719 0.913839501 0.862798249 1.008402924 0.97520054 0.944050347 0.949606738 1.008161175 0.993708053 1 11.53263501 -7.367906426 9.685930583 0.998584333 0.951026246 0.206537456 0.040478923 0.43865067 37.1648292 0.006973996 0.007966038 4.29E-08 7.367906426 -0.047558086 FTDKDQQPS(ph)GS(ph)EGEDDDAEAALKK ddPTM_HeLa_CUDC101_4h_R1 2 FTDKDQQPSGSEGEDDDAEAALKK 24 2 Q9NXG2;H3BNW0 Q9NXG2 THUMPD1 THUMP domain-containing protein 1 2 0 FT(0.003)DKDQQPS(1)GS(0.998)EGEDDDAEAALKK;FT(0.061)DKDQQPS(0.969)GS(0.969)EGEDDDAEAALKK ; 80.109 0.00079545 410210000 5162.9 4629.6 5061.5 4349.7 5279.2 4910.8 4314.7 4940.6 4901.4 4387 TRUE FALSE FALSE 4557.712688 4772.232489 5335.14 4527.099567 4889.763934 4817.134672 4481.119424 5503.017933 4699.362217 4360.905929 1.045129788 1.094321356 1.223401763 1.038109888 1.121272509 1.104617882 1.027566175 1.261897877 1.077611463 1 12.09041215 -7.366752103 2.228872248 1.017829512 1.121215229 0.216868793 0.07108849 0.253638254 2.387588656 0.011823298 0.013487359 4.30E-08 7.366752103 0.103385717 DFLSNEASLGAIGTS(ph)LPSR ddPTM_HeLa_CUDC101_4h_R1 1 DFLSNEASLGAIGTSLPSR 19 0 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 0 DFLSNEASLGAIGT(0.009)S(0.745)LPS(0.246)R 122.83 5.30E-05 12213000 2999.2 1850.7 2007.1 2042.2 1860.4 2573.6 2248.1 2452.7 1992.1 2731 TRUE FALSE FALSE 2647.638322 1907.717873 2115.609897 2125.489743 1723.161998 2524.512868 2334.80997 2731.905454 1909.984795 2714.755891 0.975276758 0.7027217 0.779300233 0.782939546 0.634739206 0.929922604 0.860044168 1.006317166 0.703556737 1 11.40660676 -7.366395121 7.476908672 0.989003471 0.810754179 0 0.134524216 0.199031051 12.62058463 0.017186333 0.019604579 4.30E-08 7.366395121 -0.178249291 YNLDAS(ph)EEEDSNKK ddPTM_HeLa_CUDC101_4h_R1 3 YNLDASEEEDSNKK 14 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 YNLDAS(1)EEEDSNKK;YNLDAS(1)EEEDSNKK;YNLDAS(0.999)EEEDS(0.001)NKK ;; 191.44 2.71E-11 428356400 7887.35 5582.29 6045.5 5738.29 5601.79 5599.8 5780.69 5591.98 5980.65 7506.37 TRUE FALSE FALSE 6962.806789 5754.273738 6372.338017 5972.322269 5188.557112 5492.993145 6003.65315 6228.5484 5734.125076 7461.721777 0.933136747 0.77117238 0.854003701 0.800394661 0.69535655 0.736156253 0.804593541 0.834733401 0.76847211 1 12.86529285 -7.366391062 0.980064658 0.983651337 0.772346963 0.088918255 0.08255214 0.158452491 0.303986338 0.011074001 0.012471625 4.30E-08 7.366391062 -0.211304374 QLPALDGSLMGPES(ph)PPAQEEEAPVSPHK ddPTM_HeLa_CUDC101_4h_R1 1 QLPALDGSLMGPESPPAQEEEAPVSPHK 28 0 A0A494C108;Q8N9T8 A0A494C108 KRI1 Protein KRI1 homolog 1 0 QLPALDGSLMGPES(1)PPAQEEEAPVSPHK 127.49 4.67E-14 12301000 2308.5 1280.7 1027.8 1053.4 1934.5 1951.9 1748.1 1234.3 2089.1 2221.9 TRUE FALSE FALSE 2037.901129 1320.156849 1083.365977 1096.362205 1791.795789 1914.67076 1815.524803 1374.807723 2002.986414 2208.68404 0.922676622 0.597711952 0.490502923 0.496387073 0.81125039 0.866883051 0.821993898 0.622455588 0.906868695 1 11.10897134 -7.364118746 4.928313195 0.966270705 0.677719843 0.493575282 0.125398116 0.144047977 5.471250957 0.024201201 0.027547775 4.32E-08 7.364118746 -0.288550861 YSPS(ph)QNSPIHHIPSR ddPTM_HeLa_CUDC101_4h_R1 1 YSPSQNSPIHHIPSR 15 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;H0YF00;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 YS(0.004)PS(0.986)QNS(0.01)PIHHIPSR 113.05 0.0012651 54636000 1960.6 1244.9 1085.4 884.57 1618.9 1502.4 1419.4 1051.8 1664.3 1936.9 TRUE FALSE FALSE 1730.78144 1283.253893 1144.080007 920.646588 1499.476972 1473.744223 1474.146733 1171.53266 1595.69685 1925.379233 0.898930149 0.666494097 0.594210215 0.478163768 0.778795651 0.765430622 0.765639677 0.608468524 0.828770157 1 10.91092692 -7.363305187 2.817203239 0.958902305 0.666087406 0.555607022 0.097983413 0.12104181 1.798069461 0.017592303 0.020078064 4.33E-08 7.363305187 -0.292814898 HSVTAAT(ph)PPPSPT(ph)SGESGDLLSNLLQSPSSAK ddPTM_HeLa_CUDC101_4h_R1 1 HSVTAATPPPSPTSGESGDLLSNLLQSPSSAK 32 0 Q96QU8-2;Q96QU8 Q96QU8-2 XPO6 Exportin-6 2 0 HS(0.001)VT(0.005)AAT(0.933)PPPS(0.207)PT(0.627)S(0.203)GES(0.023)GDLLS(0.002)NLLQSPSSAK 94.57 6.02E-10 48484000 7892.6 4538.8 4229.6 4019.1 5388.9 5195 5278.3 5363.3 5865.6 7788.4 TRUE FALSE FALSE 6967.441392 4678.635048 4458.26497 4183.01627 4991.371583 5095.91403 5481.885799 5973.836393 5623.817485 7742.07425 0.899945049 0.604312862 0.575848904 0.540296584 0.644707274 0.658210431 0.708064224 0.771606704 0.726396739 1 12.91850443 -7.362864066 3.612217884 0.957798836 0.639595239 0.500908001 0.097141191 0.075429096 1.77179882 0.013119675 0.01494904 4.34E-08 7.362864066 -0.318203597 GLPLGSAVSS(ph)PVLFS(ph)PVGR ddPTM_HeLa_CUDC101_4h_R1 1 GLPLGSAVSSPVLFSPVGR 19 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 2 0 GLPLGS(0.056)AVS(0.461)S(0.571)PVLFS(0.912)PVGR 88.781 0.037363 13730000 1582.7 1670.6 1148 1330.4 1296.8 1384.7 818.5 431.02 1631.1 1682.6 TRUE FALSE FALSE 1397.178305 1722.069206 1210.064353 1384.659462 1201.137648 1358.289155 850.0698192 480.0855746 1563.865368 1672.59182 0.835337282 1.029581267 0.723466621 0.827852585 0.718129572 0.812086451 0.508235069 0.287030923 0.934995226 1 10.7078697 -4.329038842 0.584072938 0.92374827 4.39E-36 0.816593379 0.092197792 1.084601518 0.261928826 0.018387549 0.663508347 4.69E-05 4.329038842 -0.92374827 down RLET(ph)PEPGQQGLQAAAR ddPTM_HeLa_CUDC101_4h_R1 1 RLETPEPGQQGLQAAAR 17 1 I3L419;I3L156;Q9BSJ6-2;Q9BSJ6 I3L419 FAM64A Protein FAM64A 1 0 RLET(1)PEPGQQGLQAAAR 132.23 7.00E-05 0 1615.6 1421.2 1218.7 1231.4 1608.6 1419.4 983.96 306.08 1353.4 1222.3 TRUE FALSE FALSE 1426.221817 1464.985487 1284.586608 1281.621815 1489.936783 1392.32731 1021.911667 340.92291 1297.612279 1215.029705 1.173816419 1.205719894 1.05724708 1.05480698 1.226255438 1.145920387 0.841058998 0.280588128 1.067967535 1 10.24677587 -4.328682984 2.398414506 1.102292079 0.155044462 0.925181288 0.072289013 0.106806219 0.820190728 0.012549615 0.19547091 4.69E-05 4.328682984 -0.947247618 down HGTDLWIDNMSSAVPNHS(ph)PEKK ddPTM_HeLa_CUDC101_4h_R1 2 HGTDLWIDNMSSAVPNHSPEKK 22 1 Q8N6H7;H0YF45;E9PJT7;E9PK28;E9PN48;E9PIY6 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 0 HGTDLWIDNMS(0.148)S(0.148)AVPNHS(0.703)PEKK;HGTDLWIDNMS(0.026)S(0.023)AVPNHS(0.951)PEKK ; 73.574 0.0013836 40153000 5129.1 2579.47 1989.04 2060.32 6122.7 4456.4 3935.5 3685.2 4475.2 4078.2 TRUE FALSE FALSE 4527.874673 2658.940413 2096.573519 2144.348755 5671.040619 4371.401595 4087.293553 4104.708272 4290.730362 4053.942685 1.116906435 0.655889987 0.517169008 0.52895389 1.398895115 1.078308682 1.008226774 1.012522522 1.058409232 1 11.98510998 -7.362555394 18.17158663 1.055208675 0.889278351 0.087187364 0.255819987 9.264018731 1655.161825 0.047288736 0.054074734 4.34E-08 7.362555394 -0.165930324 YPDVAS(ph)PTLRR ddPTM_HeLa_CUDC101_4h_R1 2 YPDVASPTLRR 11 1 A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-4;Q8IVL1-8;Q8IVL1-9;Q8IVL1-10;Q8IVL1-13;Q8IVL1-12;Q8IVL1-11;Q8IVL1-3;Q8IVL1-2;Q8IVL1;Q8IVL1-5;E9PNV5 A0A0A0MTL4 NAV2 Neuron navigator 2 1 0 YPDVAS(0.854)PT(0.146)LRR;YPDVAS(0.744)PT(0.256)LRR ; 109.44 0.0038141 65868000 8831.1 8284 8233 8099.1 9231.9 7186.8 7289.5 7910.5 8259 7826.1 TRUE FALSE FALSE 7795.931845 8539.220221 8678.100883 8429.416305 8550.88113 7049.723764 7570.658457 8810.999345 7918.560524 7779.550009 1.002105756 1.097649634 1.115501652 1.083535204 1.099148552 0.906186573 0.973148633 1.132584704 1.017868709 1 12.92547099 -7.362205956 10.96807399 1.000943417 1.05386696 0.109765201 0.065920961 0.922682413 95.94775812 0.011705865 0.013376964 4.34E-08 7.362205956 0.052923543 TGEPSPPHDILHEPPDVVS(ph)DDEKDHGK ddPTM_HeLa_CUDC101_4h_R1 2 TGEPSPPHDILHEPPDVVSDDEKDHGK 27 1 J3QLT3;E7ENF8;A0A1W2PRI7;Q15311 J3QLT3 RALBP1 RalA-binding protein 1 1 0 TGEPSPPHDILHEPPDVVS(1)DDEKDHGK;TGEPSPPHDILHEPPDVVS(1)DDEKDHGK ; 66.871 0.00028356 64443000 10415.6 8129.7 7780.6 7951.8 9278.1 8883.2 7739.3 9030.8 9336.8 9455.8 TRUE FALSE FALSE 9194.699157 8380.166421 8201.242771 8276.108775 8593.673048 8713.76776 8037.807393 10058.82977 8951.933152 9399.556481 0.978205639 0.891549132 0.872513803 0.880478647 0.914263675 0.927040311 0.85512624 1.070138765 0.95237825 1 13.19837697 -7.362001781 4.723271528 0.990522676 0.910985467 0.178052122 0.05754501 0.195695948 7.060022717 0.009057538 0.010312105 4.35E-08 7.362001781 -0.079537209 SVFVS(ph)ERK ddPTM_HeLa_CUDC101_4h_R1 1 SVFVSERK 8 1 Q9H211 Q9H211 CDT1 DNA replication factor Cdt1 1 0 S(0.001)VFVS(0.999)ERK 88.029 0.0021433 0 627.88 429.55 429.58 327.87 408.89 437.83 417.16 361.99 406.12 638.63 TRUE FALSE FALSE 554.2808582 442.7839264 452.8043942 341.2419558 378.7269993 429.4791222 433.2500009 403.1974784 389.3795617 634.8314004 0.873115063 0.697482711 0.713267167 0.537531627 0.59657887 0.676524699 0.682464668 0.635125292 0.613359014 1 9.310229679 -7.361703225 1.036813311 0.964566898 0.629502998 0.13672391 0.121054982 0.10622719 0.226339309 0.011957403 0.013523619 4.35E-08 7.361703225 -0.3350639 ESSIIAPAPAEDVDT(ph)PPRK ddPTM_HeLa_CUDC101_4h_R1 1 ESSIIAPAPAEDVDTPPRK 19 1 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 ESSIIAPAPAEDVDT(1)PPRK 129.2 0.00041248 18359000 4060.8 3443 3373.9 2553.9 3325 3010 3067.4 3342.1 3346.1 4005.6 TRUE FALSE FALSE 3584.79918 3549.074749 3556.303239 2658.059081 3079.721374 2952.589265 3185.710646 3722.551155 3208.172342 3981.774513 0.900301905 0.891329918 0.893145312 0.667556405 0.77345449 0.741525984 0.800073092 0.934897529 0.805714219 1 11.95919581 -7.360703419 0.716309797 0.976738977 0.787214238 0.123777208 0.08896414 0.348425203 0.379267369 0.020300341 0.022604958 4.36E-08 7.360703419 -0.189524739 TSSVLGMS(ph)VESAPAVEEEKGEELEQK ddPTM_HeLa_CUDC101_4h_R1 1 TSSVLGMSVESAPAVEEEKGEELEQK 26 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.009)S(0.003)S(0.021)VLGMS(0.959)VES(0.008)APAVEEEKGEELEQK 77.505 7.91E-05 12764000 1328.6 937.28 925.43 877.58 940.46 873.5 1069.7 1351.8 1239.9 1230.4 TRUE FALSE FALSE 1172.863522 966.1564858 975.4615451 913.3715056 871.0841395 856.8394429 1110.958687 1505.683448 1188.790797 1223.081526 0.958941409 0.789936292 0.797544174 0.746778924 0.712204478 0.700557914 0.908327584 1.231057305 0.971963661 1 10.25630486 -7.35989458 4.74313307 0.982142215 0.828057256 0.15413747 0.144284506 0.283661503 10.38780124 0.025475498 0.029012051 4.37E-08 7.35989458 -0.154084959 SQSTT(ph)FNPDDMSEPEFK ddPTM_HeLa_CUDC101_4h_R1 2 SQSTTFNPDDMSEPEFK 17 0 Q86W92-4;Q86W92;Q86W92-3;F5GZP6;Q86W92-2 Q86W92-4;Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.047)QS(0.047)T(0.428)T(0.478)FNPDDMSEPEFK;SQS(0.092)T(0.243)T(0.665)FNPDDMSEPEFK ; 219.85 6.41E-32 91838500 6226.9 5163.2 3862.7 4557.4 4949.7 4968.1 4608.1 4157 5055.7 6114.4 TRUE FALSE FALSE 5496.992221 5322.272072 4071.529246 4743.270471 4584.570492 4873.34177 4785.835961 4630.216077 4847.301906 6078.031277 0.904403411 0.875657237 0.669876324 0.780395864 0.754285439 0.801796099 0.787399035 0.761795369 0.79751184 1 12.56938838 -7.359603352 1.188115989 0.969245048 0.764131698 0.357546188 0.069823569 0.137583449 0.379545708 0.009917926 0.011268057 4.37E-08 7.359603352 -0.20511335 QQTST(ph)PVLTQPGR ddPTM_HeLa_CUDC101_4h_R1 2 QQTSTPVLTQPGR 13 0 Q5T5U3;A0A087WW76;A0A452Q6Z5;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 QQTS(0.033)T(0.966)PVLT(0.001)QPGR;QQT(0.012)S(0.012)T(0.972)PVLT(0.004)QPGR ; 130.47 0.0053433 27750000 4067.8 2951 2784.4 3209.9 3467.3 2879.5 2894 3177.9 3004.3 3787.8 TRUE FALSE FALSE 3590.97865 3041.916812 2934.933086 3340.813596 3211.524187 2824.578335 3005.622549 3539.65929 2880.461482 3765.269997 0.953710797 0.807888097 0.779474802 0.88727066 0.852933306 0.750166213 0.798248878 0.940081134 0.76500795 1 11.8785376 -7.358859439 3.881682629 0.980265029 0.827525351 0 0.085689063 0.10757784 2.880174882 0.009201135 0.010488706 4.38E-08 7.358859439 -0.152739677 QGVDDIEKFEDEGAGFEESS(ph)ETGDYEEK ddPTM_HeLa_CUDC101_4h_R1 2 QGVDDIEKFEDEGAGFEESSETGDYEEK 28 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QGVDDIEKFEDEGAGFEES(0.124)S(0.691)ET(0.185)GDY(0.001)EEK;QGVDDIEKFEDEGAGFEES(0.119)S(0.709)ET(0.169)GDY(0.002)EEK ; 104.81 7.95E-10 12529300 12699.5 9975.2 9415.3 9943.8 10229.2 10998.6 10458.5 9259.5 12228.9 11672.2 TRUE FALSE FALSE 11210.88386 10282.52409 9924.319598 10349.35114 9474.612295 10788.82003 10861.88785 10313.56405 11724.81957 11602.77324 0.966224508 0.886212622 0.855340305 0.891972198 0.8165817 0.929848392 0.936145836 0.888887841 1.010518721 1 13.50218205 -7.35763926 2.903828175 0.986174243 0.88589319 0.680175775 0.033373931 0.122571603 1.933908997 0.006169293 0.007052318 4.39E-08 7.35763926 -0.100281053 S(ph)PESQVIGENTKQP ddPTM_HeLa_CUDC101_4h_R1 1 SPESQVIGENTKQP 14 1 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 S(1)PESQVIGENTKQP 115 0.011812 6879600 1419.1 1344.7 1281.7 1230.1 1496.9 1490.3 1122.7 1224.7 1589 1244 TRUE FALSE FALSE 1252.755249 1386.128613 1350.992579 1280.268795 1386.476669 1461.875011 1166.002915 1364.114898 1523.500747 1236.600633 1.01306373 1.12091857 1.092505166 1.035313068 1.121200032 1.182172297 0.942909848 1.103116772 1.23200709 1 10.27216393 -7.357501585 6.686761381 1.005816918 1.083306819 0 0.092918695 0.238805835 14.23352611 0.009797492 0.011171093 4.39E-08 7.357501585 0.077489901 EEAATGGGS(ph)TGEADGK ddPTM_HeLa_CUDC101_4h_R1 1 EEAATGGGSTGEADGK 16 0 O43242 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 1 0 EEAATGGGS(0.954)T(0.046)GEADGK 168.47 8.62E-07 9677400 2988.3 1984.9 2297.9 2082.7 2074.2 2055.9 2388.2 1892.2 2784.7 2795.5 TRUE FALSE FALSE 2638.016004 2046.052416 2422.131425 2167.641508 1921.190398 2016.687133 2480.313674 2107.600399 2669.913487 2778.872242 0.949311726 0.736288767 0.871623887 0.7800436 0.691356144 0.725721429 0.892561247 0.758437314 0.960790297 1 11.44028379 -7.356660907 4.571567984 0.978066343 0.782025053 0.682935438 0.059576738 0.092555221 3.251024579 0.010558243 0.0120303 4.40E-08 7.356660907 -0.19604129 SDS(ph)VSASER ddPTM_HeLa_CUDC101_4h_R1 2 SDSVSASER 9 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 S(0.06)DS(0.899)VS(0.041)ASER;S(0.06)DS(0.92)VS(0.02)ASER ; 135.8 0.0024276 162290000 6455.6 2522 3696.2 4855.9 3179.9 3089.2 4883.5 5580.7 3943 5744.6 TRUE FALSE FALSE 5698.884354 2599.699831 3896.027752 5053.944591 2945.325112 3030.278657 5071.858231 6215.98433 3780.467871 5710.430864 0.997977997 0.455254585 0.682265112 0.885037349 0.515779839 0.530656745 0.888174352 1.08853158 0.662028481 1 12.47938389 -7.356058683 15.32366345 0.999088758 0.716889135 0.041666551 0.213101045 1.789579824 287.5765582 0.031708175 0.036255329 4.40E-08 7.356058683 -0.282199623 TCGVNDDESPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 TCGVNDDESPSK 12 0 Q8NG08 Q8NG08 HELB DNA helicase B 1 0 TCGVNDDES(0.141)PS(0.859)K;TCGVNDDES(0.041)PS(0.959)K ; 187.97 7.56E-21 4399200 6904.6 5325.8 4898.3 5559.6 5214.6 5479.9 5270.3 4502.7 6576.1 6516.2 TRUE FALSE FALSE 6095.253255 5489.881585 5163.116915 5786.344519 4829.929347 5375.380038 5473.577236 5015.269167 6305.030375 6477.441353 0.940997058 0.847538602 0.797092036 0.893307126 0.745653891 0.82986163 0.845021504 0.774267013 0.973382858 1 12.66120833 -7.355966262 1.075144652 0.983727408 0.811619965 0.762509099 0.03946295 0.141168652 0.321885169 0.008241424 0.009356817 4.41E-08 7.355966262 -0.172107443 GTEDITSPHGIPLDLLDR ddPTM_HeLa_CUDC101_4h_R1 2 GTEDITSPHGIPLDLLDR 18 0 Q9Y265;H7C4G5;E7ETR0;Q9Y265-2;J3QLR1 Q9Y265 RUVBL1 RuvB-like 1 0 0 ; ; 148.44 5.87E-05 11254300 6123.6 3860.9 3267.4 3426.9 6183.4 4906.2 4289.7 4164.9 5018.3 4723.7 FALSE FALSE TRUE 5405.800891 3979.849753 3444.045527 3566.663794 5727.262901 4812.622409 4455.155166 4639.015381 4811.44355 4695.603222 1.151247376 0.847569431 0.733461786 0.759575208 1.219707592 1.024921013 0.948792936 0.98794876 1.024669957 1 12.19709479 -10.34994266 22.74879041 0.99999864 1.013853513 0 0.154212635 550.6914549 858318.759 0.604337207 0.024120892 4.47E-11 10.34994266 0.013854874 EATQPEPIY(ph)AESTK ddPTM_HeLa_CUDC101_4h_R1 2 EATQPEPIYAESTK 14 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 EATQPEPIY(0.944)AES(0.052)T(0.004)K;EATQPEPIY(0.982)AES(0.014)T(0.004)K ; 191.48 7.59E-11 24877000 7728.9 8013.8 7436.1 7768.3 9285 8885.8 7281.7 4856.7 7195.9 6608.3 TRUE FALSE FALSE 6822.930058 8260.695679 7838.118059 8085.124851 8600.064048 8716.31817 7562.557608 5409.567097 6899.281956 6568.993538 1.038656838 1.257528361 1.193199234 1.230801158 1.309190517 1.32688792 1.151250578 0.82350014 1.050279912 1 12.68145663 -7.354784007 5.639600326 1.017067715 1.195459226 0.217861236 0.133135898 0.223084331 10.78808288 0.022941815 0.026144301 4.42E-08 7.354784007 0.17839151 LHVGNIS(ph)PTCTNQELR ddPTM_HeLa_CUDC101_4h_R1 3 LHVGNISPTCTNQELR 16 0 Q9BQ04;E9PLB0;E9PM61;U3KQD5 Q9BQ04 RBM4B RNA-binding protein 4B 1 0 LHVGNIS(0.998)PT(0.001)CTNQELR;LHVGNIS(0.937)PT(0.057)CT(0.006)NQELR;LHVGNIS(0.995)PT(0.005)CT(0.001)NQELR ;; 132.47 8.17E-05 43140000 3732.67 3704.77 3651.19 3951.55 3940.3 3379.91 3944.2 3540.14 4195.85 3098.47 TRUE FALSE FALSE 3295.132081 3818.909572 3848.584376 4112.711289 3649.631919 3315.443848 4096.329115 3943.135228 4022.895287 3080.040163 1.069834128 1.239889537 1.249524088 1.335278461 1.184929977 1.076428771 1.329959643 1.280222016 1.306117802 1 11.58873345 -7.354507102 2.554507129 1.027766358 1.242673483 0.0096057 0.112965262 0.131907223 1.622586266 0.013473339 0.015430528 4.42E-08 7.354507102 0.214907125 AHLDHIPDYTPPLLTTIS(ph)PEQESDER ddPTM_HeLa_CUDC101_4h_R1 2 AHLDHIPDYTPPLLTTISPEQESDER 26 0 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;K7EM61 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 AHLDHIPDYTPPLLT(0.038)T(0.065)IS(0.778)PEQES(0.12)DER;AHLDHIPDYTPPLLT(0.003)T(0.01)IS(0.97)PEQES(0.017)DER ; 91.926 7.48E-06 13434100 1643.13 1576.72 1566.78 1341.98 1699.04 1596.7 1487.9 1411.81 1504.33 1444.69 TRUE FALSE FALSE 1450.524792 1625.296874 1651.484866 1396.711745 1573.705204 1566.245608 1545.288801 1572.524744 1442.320881 1436.09692 1.010046587 1.131745951 1.149981483 0.972574849 1.095821029 1.090626675 1.076033783 1.094999037 1.004333942 1 10.4879374 -7.354048897 7.683200144 1.004508561 1.08532864 0.424504657 0.044049332 0.199420956 14.76305798 0.007403679 0.008448389 4.43E-08 7.354048897 0.080820079 S(ph)NTPILVDGK ddPTM_HeLa_CUDC101_4h_R1 1 SNTPILVDGK 10 0 K7EQ48;A0A2U3TZU2;P06744;A0A0J9YXP8;A0A0J9YYH3;A0A2R8Y6C7;P06744-2;K7EP41;K7EPY4;A0A0J9YX90;K7ERC6 K7EQ48 GPI Glucose-6-phosphate isomerase 1 0 S(0.612)NT(0.388)PILVDGK 106.79 0.0095916 65920000 6546.3 4718.5 5022.6 5072.6 4608 4653.9 4810.8 3951 5797.2 6513.1 TRUE FALSE FALSE 5778.952638 4863.871392 5294.136949 5279.482554 4268.07702 4565.134611 4996.354168 4400.76587 5558.236962 6474.359792 0.892590592 0.751251328 0.817708178 0.815444727 0.659227655 0.705109811 0.771714012 0.679722167 0.858499858 1 12.66052183 -7.353646281 0.454799225 1.000182177 0.697818055 0.615665559 0.06161357 0.235110428 0.123689491 0.022032268 0.0238177 4.43E-08 7.353646281 -0.302364122 IETSIGQSTVIIDLTEDS(ph)NEQPDSLVDHNK ddPTM_HeLa_CUDC101_4h_R1 1 IETSIGQSTVIIDLTEDSNEQPDSLVDHNK 30 0 Q13111;Q13111-3;Q13111-2;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 IETSIGQSTVIIDLT(0.081)EDS(0.919)NEQPDSLVDHNK 113.02 6.09E-11 6046600 1380.3 835.46 847.72 1039.2 903.24 1165.5 1082 952.12 1079.1 1249.5 TRUE FALSE FALSE 1218.503326 861.1995323 893.5503074 1081.583068 836.6097847 1143.270029 1123.733102 1060.505492 1034.619041 1242.067918 0.981027936 0.693359453 0.719405351 0.87079221 0.673562027 0.920456935 0.90472758 0.853822465 0.832981052 1 10.27852835 -7.35348673 8.238360141 0.991465676 0.807715055 0.235728326 0.096100146 0.186370847 15.192779 0.014219104 0.016231172 4.43E-08 7.35348673 -0.183750621 AGQDMGLEHGFEKPLDSAMS(ph)AEEDTDVR ddPTM_HeLa_CUDC101_4h_R1 1 AGQDMGLEHGFEKPLDSAMSAEEDTDVR 28 1 Q99549-2;Q99549;A0A0A0MT47 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 AGQDMGLEHGFEKPLDS(0.172)AMS(0.817)AEEDT(0.011)DVR 75.068 2.93E-05 9261800 1776.8 1568.5 997.32 1261.6 1203.7 1066.6 1120.5 1225 1576.9 1899.2 TRUE FALSE FALSE 1568.526197 1616.823626 1051.238136 1313.053501 1114.905449 1046.256382 1163.71806 1364.449048 1511.899515 1887.903474 0.830829658 0.856412231 0.556828329 0.695508811 0.590552147 0.554189553 0.616407606 0.722732421 0.800835178 1 10.88256929 -7.350934664 0.629895006 0.96953233 0.60580932 0.595142838 0.089528627 0.208213859 0.182013683 0.022897528 0.025465687 4.46E-08 7.350934664 -0.363723009 GYVLGETSNLPS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 2 GYVLGETSNLPSPGK 15 0 B1AKT1;Q9H040 B1AKT1 SPRTN SprT-like domain-containing protein Spartan 1 0 GYVLGETSNLPS(0.999)PGK;GYVLGET(0.002)SNLPS(0.998)PGK ; 195.6 3.35E-16 35450000 8856.4 7334.1 6954.5 6408.1 7026 6848.8 4892.1 2402.28 5778.9 5710.5 TRUE FALSE FALSE 7818.266217 7560.054928 7330.481306 6669.450016 6507.705978 6718.170551 5080.789936 2675.745845 5540.691296 5676.533692 1.377295836 1.331808343 1.291365771 1.174915957 1.146422505 1.183498754 0.895051489 0.471369676 0.976069481 1 12.47079452 -4.321097783 1.652117591 1.201825753 0.25840083 0.762462135 0.123510867 0.37335964 1.061508928 0.021797869 0.538346422 4.77E-05 4.321097783 -0.943424923 down GTFHDDRDDGVDYWAK ddPTM_HeLa_CUDC101_4h_R1 3 GTFHDDRDDGVDYWAK 16 1 E9PK91;Q9NYF8-3;H0YF63 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 0 0 ;; ;; 79.771 0.0093139 132590000 27233.3 22188.5 23617.4 23187.5 26683.5 24024.3 23944.1 25624.9 25872.1 24912.1 FALSE FALSE TRUE 24041.05386 22872.10139 24894.22808 24133.18647 24715.11137 23566.0765 24867.63196 28541.93504 24805.64109 24763.92172 0.970809637 0.923605786 1.005261944 0.974530074 0.998028973 0.951629422 1.004187957 1.152561188 1.001684683 1 14.59595218 -4.272339749 3.726615768 0.980874087 1.168878694 0.818045682 0.024493712 0.075437893 1.972502745 0.003322163 0.038357027 5.34E-05 4.272339749 0.188004607 AS(ph)PPPQGPLPGPPGALHR ddPTM_HeLa_CUDC101_4h_R1 4 ASPPPQGPLPGPPGALHR 18 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR ;;; 132.51 5.72E-05 622285000 3873.29 4384.31 3830.56 3960.8 4991.34 4402.5 3936.81 3527.17 4584.13 3232.55 TRUE FALSE FALSE 3419.268818 4519.385394 4037.65166 4122.338544 4623.138792 4318.529648 4088.65408 3928.688775 4395.170221 3213.322649 1.064091345 1.406452413 1.256534778 1.282889705 1.438740923 1.34394523 1.272406953 1.222625054 1.367796111 1 11.64985013 -7.350783958 5.419137984 1.028250178 1.317543419 0.132305296 0.124912405 0.067831118 3.187761487 0.011454261 0.013057088 4.46E-08 7.350783958 0.289293241 HEAPSS(ph)PISGQPCGDDQNAS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 HEAPSSPISGQPCGDDQNASPSK 23 0 A0A088AWL3;O75376;O75376-2;E7EVU5;E7EW50;J3KS51;O75376-3 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 2 0 HEAPS(0.174)S(0.824)PIS(0.002)GQPCGDDQNAS(0.933)PS(0.067)K;HEAPS(0.209)S(0.753)PIS(0.038)GQPCGDDQNAS(0.925)PS(0.075)K ; 139.25 7.19E-07 47310000 11219.9 8142.3 8137.2 7335.5 9796.9 9155 8608.5 7746 10658.5 10394.3 TRUE FALSE FALSE 9904.72033 8393.154612 8577.121646 7634.673397 9074.202205 8980.383628 8940.532729 8627.77333 10219.15212 10332.47424 0.958601018 0.812308303 0.830113044 0.738900792 0.878221614 0.869141642 0.865284783 0.835015228 0.989032431 1 13.33489815 -7.350670454 4.049179908 0.982259292 0.833352295 0.768220036 0.037832552 0.083511069 2.457086143 0.007073015 0.008074553 4.46E-08 7.350670454 -0.148906997 GCES(ph)PDPDSSYALTPR ddPTM_HeLa_CUDC101_4h_R1 2 GCESPDPDSSYALTPR 16 0 Q06413-5;Q06413-6;A0A0D9SGI5;A0A0D9SFD0;D6RC63;D6R942;A0A0D9SET2;D6RB91 Q06413-5 MEF2C Myocyte-specific enhancer factor 2C 1 0 GCES(0.996)PDPDS(0.003)S(0.001)YALTPR;GCES(0.648)PDPDS(0.176)S(0.176)YALTPR ; 176.43 3.06E-07 19415500 4812.3 5150 5264.6 4966.8 5982.1 5204.3 4587.1 3498.3 5238.6 4032.7 TRUE FALSE FALSE 4248.209489 5308.665396 5549.220201 5169.367572 5540.812401 5105.036648 4764.025984 3896.532331 5022.662691 4008.713321 1.0597439 1.324281626 1.38428961 1.289532865 1.382192229 1.273485091 1.18841773 0.972015712 1.252936363 1 11.96892353 -7.349218828 4.978997181 1.026213869 1.26744294 0.154408027 0.132937308 0.141680331 5.908269378 0.020132061 0.022956661 4.47E-08 7.349218828 0.241229072 TQLWASEPGT(ph)PPLPTSLPSQNPILK ddPTM_HeLa_CUDC101_4h_R1 1 TQLWASEPGTPPLPTSLPSQNPILK 25 0 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;H7C3A1 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 T(0.001)QLWAS(0.123)EPGT(0.876)PPLPTSLPSQNPILK 128.01 3.62E-10 371780000 5880.9 4935.4 4655.1 4724.9 4881.6 4700 4671.4 4903.2 5565.8 5474.3 TRUE FALSE FALSE 5191.549817 5087.453824 4906.768787 4917.601845 4521.494094 4610.355331 4851.577463 5461.360469 5336.375368 5441.73862 0.954024105 0.934894926 0.901691376 0.903682111 0.83089145 0.847221018 0.891549154 1.003605805 0.980637943 1 12.40985195 -7.348830286 0.847175802 0.988024769 0.88902755 0.417996361 0.043733144 0.351281108 0.514364152 0.010982818 0.012422687 4.48E-08 7.348830286 -0.098997219 GTHDLWDSR ddPTM_HeLa_CUDC101_4h_R1 2 GTHDLWDSR 9 0 E9PGM4;Q04446 E9PGM4 GBE1 "1,4-alpha-glucan-branching enzyme" 0 0 ; ; 132.88 0.0026065 33140000 5562.5 3570 3377.7 3625.1 4248.1 4395.1 3677.7 3299.4 4068.9 4143.7 FALSE FALSE TRUE 4910.472182 3679.987469 3560.308679 3772.947247 3934.726126 4311.27079 3819.550121 3674.990359 3901.17822 4119.053088 1.192136172 0.893406176 0.864351248 0.915974416 0.955250161 1.046665507 0.927288394 0.892193007 0.947105594 1 12.00809701 -7.246579346 24.83856432 1.090730972 0.930573705 0.279673826 0.077906014 512.0456769 855885.7442 0.014239717 0.017401786 5.67E-08 7.246579346 -0.160157266 GTHDRDPSEK(ac)PPR ddPTM_HeLa_CUDC101_4h_R1 1 GTHDRDPSEKPPR 13 2 Q969S3 Q969S3 ZNF622 Zinc finger protein 622 0 1 GTHDRDPSEK(1)PPR 70.089 0.027203 331160 175.29 52.71 173.62 161.16 345.32 128.76 256.56 0 0 157.81 FALSE TRUE FALSE 154.7427719 54.33393262 183.0064224 167.7328014 319.8464316 126.3041175 266.4556051 0 0 156.8713391 0.986431128 0.346359845 1.166602028 1.069238029 2.038909296 0.805144638 1.698561424 0 0 1 7.293437981 -6.571350774 24.999851 0.935900149 1.180705994 0.051157046 0.615008477 290.1966143 149670.1651 0.077705294 0.109891887 2.68E-07 6.571350774 0.244805846 GTHDRDPSEKPPR ddPTM_HeLa_CUDC101_4h_R1 2 GTHDRDPSEKPPR 13 2 Q969S3 Q969S3 ZNF622 Zinc finger protein 622 0 0 ; ; 50.354 0.033847 5196800 1283.72 783.49 1596.26 1576.08 1397.48 1275.52 1219.24 828.35 1428.3 1469.03 FALSE FALSE TRUE 1133.244288 807.6283982 1682.558644 1640.359355 1294.390685 1251.191581 1266.266495 922.6460157 1369.424869 1460.292144 0.776039433 0.553059469 1.152206872 1.123309032 0.886391596 0.856809089 0.867132307 0.631822899 0.937774592 1 10.51204131 -9.551907245 1.378152933 0.998556977 0.854588509 0.058258789 0.176566616 0.935755908 3.234336365 0.121541966 0.030017589 2.81E-10 9.551907245 -0.143968468 GTIDPK ddPTM_HeLa_CUDC101_4h_R1 1 GTIDPK 6 0 F5H815;O15516;O15397 F5H815 IPO8;CLOCK Circadian locomoter output cycles protein kaput;Importin-8 0 0 69.39 0.0032373 0 635.97 758.1 783.42 790.2 648.36 767.57 735.94 732.88 618.48 858.42 FALSE FALSE TRUE 561.4225607 781.4561624 825.7740549 822.4277715 600.5317745 752.9298811 764.3254523 816.3080968 592.9859926 853.3140797 0.657931908 0.915789603 0.967725805 0.963804291 0.703764052 0.882359613 0.895714099 0.956632635 0.69492114 1 9.736933042 GTIQVITQGTSLK ddPTM_HeLa_CUDC101_4h_R1 2 GTIQVITQGTSLK 13 0 A0A286YF22;A0A2C9F2M7;O43175 A0A286YF22 PHGDH D-3-phosphoglycerate dehydrogenase 0 0 ; ; 287.76 2.91E-80 3159100 2553.45 1765.69 2103.52 1712.97 1970.19 2141.01 1789.64 1583.44 2007.18 1779.22 FALSE FALSE TRUE 2254.138462 1820.088816 2217.242654 1782.832321 1824.853009 2100.173801 1858.667014 1763.692409 1924.443191 1768.63712 1.27450591 1.029091155 1.253644758 1.008026067 1.031784863 1.187453196 1.050903542 0.997204225 1.08809386 1 10.78842236 GTITDAPGFDPLRDAEVLR ddPTM_HeLa_CUDC101_4h_R1 1 GTITDAPGFDPLRDAEVLR 19 1 P50995-2;P50995 P50995-2 ANXA11 Annexin A11 0 0 80.488 0.0018017 0 1456.4 1046.4 1038.5 1192.2 1382.6 1099.5 1053.1 1050.3 1231.9 1740.1 FALSE FALSE TRUE 1285.683 1078.638344 1094.644451 1240.823069 1280.608353 1078.528869 1093.71842 1169.861907 1181.120561 1729.749808 0.743276857 0.623580554 0.632833978 0.71734251 0.74034311 0.623517265 0.632298622 0.676318564 0.682827398 1 10.75634767 -8.675226913 0.555460044 1.017872715 0.657761165 0.034816209 0.105317101 0.224083889 0.131978962 0.03890063 0.012748068 2.11E-09 8.675226913 -0.36011155 LFPADTS(ph)PSTATK ddPTM_HeLa_CUDC101_4h_R1 1 LFPADTSPSTATK 13 0 Q6NZY4;Q6NZY4-2 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 0 LFPADT(0.223)S(0.749)PS(0.023)T(0.005)ATK 131.35 0.0010529 34258000 4358 3537.5 3237.9 3404 3840.1 3981.2 3545.6 2886.4 4618.1 4011.9 TRUE FALSE FALSE 3847.161846 3646.486182 3412.950668 3542.829833 3556.823474 3905.265243 3682.35498 3214.976109 4427.739963 3988.03704 0.964675555 0.914356147 0.855797134 0.888364325 0.891873229 0.979244978 0.923350245 0.806155027 1.110255476 1 11.96146309 -7.348589495 2.079949367 0.986325445 0.895503192 0.491713447 0.05757783 0.202467436 1.660194646 0.00800656 0.009192715 4.48E-08 7.348589495 -0.090822253 GTLNPGLTK(ac)PPVPR ddPTM_HeLa_CUDC101_4h_R1 1 GTLNPGLTKPPVPR 14 1 Q92585 Q92585 MAML1 Mastermind-like protein 1 0 1 GTLNPGLTK(1)PPVPR 169.09 3.83E-07 6375300 1275.7 1280.1 1290.1 1175.4 1490.5 1408.6 1475.9 1470.3 1439.1 1264.6 FALSE TRUE FALSE 1126.16438 1319.538364 1359.846708 1223.337893 1380.548784 1381.733302 1532.825957 1637.673009 1379.779689 1257.078103 0.89585872 1.049686858 1.081751965 0.973159814 1.098220374 1.099162652 1.219356183 1.302761543 1.097608562 1 10.29585857 -3.968361615 0.462692885 0.955721975 1.663541734 0.641316808 0.066331173 1.864514173 0.221422125 0.013289498 0.76309351 0.000107557 3.968361615 0.707819759 NVSHNPLLLLT(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 2 NVSHNPLLLLTPQK 14 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 NVSHNPLLLLT(1)PQK;NVSHNPLLLLT(1)PQK ; 123.55 0.0017597 60215000 9621.1 7729.7 7588.1 7674.5 8764.9 7745.2 7127.3 7585.7 8702.3 8832.7 TRUE FALSE FALSE 8493.329243 7967.842895 7998.335639 7987.499282 8118.330789 7597.473214 7402.202348 8449.225426 8343.587511 8780.162708 0.967331646 0.907482374 0.910955287 0.909721101 0.924621907 0.86529982 0.843059815 0.962308525 0.950277095 1 13.10003196 -7.348218617 0.782617535 0.993816235 0.893300259 0.432176565 0.034081237 0.249423379 0.316742015 0.007780198 0.008774615 4.49E-08 7.348218617 -0.100515976 LAS(ph)HGLECSSFREAWKY(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 LASHGLECSSFREAWKYK 18 2 K7ES26;Q8NB42-2;Q8NB42 K7ES26 ZNF527 Zinc finger protein 527 2 0 LAS(1)HGLECS(0.001)S(0.002)FREAWKY(0.998)K 59.261 0.0027893 0 1816.7 1163.1 1173.8 1128.6 1692.5 1202.5 1446.6 997.85 1397.8 1697.4 TRUE FALSE FALSE 1603.74918 1198.933732 1237.259179 1174.629186 1567.647647 1179.564316 1502.395847 1111.441211 1340.182092 1687.303789 0.9504804 0.710561868 0.733275885 0.696157499 0.929084411 0.699082361 0.890412181 0.658708418 0.794274333 1 10.72050403 -7.3473834 5.166785349 0.978210339 0.765608519 0.275791516 0.100876028 0.105644868 4.728005616 0.013237687 0.015096739 4.49E-08 7.3473834 -0.21260182 YGLQDSDEEEEEHPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 YGLQDSDEEEEEHPSK 16 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 YGLQDS(0.086)DEEEEEHPS(0.914)K 81.904 0.009023 116210000 7438.2 3905 4180.5 3887.2 6758.6 5809.3 5659.7 4950.5 5329.2 6661.1 TRUE FALSE FALSE 6566.305472 4025.308421 4406.510475 4045.736818 6260.031543 5698.497281 5877.996525 5514.044909 5109.52812 6621.479481 0.99166742 0.60791677 0.665487296 0.611001941 0.945412813 0.860607859 0.88771649 0.832751189 0.771659587 1 12.69293789 -7.346750564 11.11197045 0.996202134 0.777068822 0.146114584 0.130288807 0.471793729 59.98773102 0.020027831 0.022888291 4.50E-08 7.346750564 -0.219133313 QASASYDS(ph)EEEEEGLPMSYDEKR ddPTM_HeLa_CUDC101_4h_R1 5 QASASYDSEEEEEGLPMSYDEKR 23 1 Q15059 Q15059 BRD3 Bromodomain-containing protein 3 1 0 QAS(0.227)AS(0.102)Y(0.001)DS(0.669)EEEEEGLPMSYDEKR;QAS(0.022)AS(0.046)YDS(0.932)EEEEEGLPMSYDEKR;QAS(0.052)AS(0.028)Y(0.005)DS(0.915)EEEEEGLPMSYDEKR;QAS(0.007)AS(0.022)Y(0.004)DS(0.966)EEEEEGLPMSYDEKR;QAS(0.005)AS(0.034)YDS(0.961)EEEEEGLPMSYDEKR ;;;; 145.77 1.29E-07 209951000 10096.6 9649.6 9167 9440 11382.9 10032.2 9680.5 9952.4 10684.7 8061.2 TRUE FALSE FALSE 8913.091853 9946.892738 9662.595749 9825.004003 10543.20614 9840.8525 10053.88013 11085.34099 10244.27214 8013.251624 1.112294019 1.241305428 1.205827073 1.226094532 1.315721338 1.228072318 1.254656736 1.383376126 1.278416381 1 12.96817206 -7.34399064 0.36598728 0.983525804 1.327116682 0.081522564 0.096322918 0.271069906 0.105167486 0.030196016 0.032330005 4.53E-08 7.34399064 0.343590878 TSLAGDTSNSS(ph)SPASTGAK ddPTM_HeLa_CUDC101_4h_R1 1 TSLAGDTSNSSSPASTGAK 19 0 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;H0Y390;Q9UPN3-5;H0Y314;H3BPE1;H3BQK9;H0Y6T5;H0Y4F5 A0A590UJG2;H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 TSLAGDTSNS(0.015)S(0.493)S(0.493)PASTGAK 251 1.26E-56 22035000 9238.8 7326.8 7607.9 7552.9 9289.6 8124 6322.6 3394.6 9146.9 8175.3 TRUE FALSE FALSE 8155.841869 7552.530024 8019.206087 7860.939908 8604.324715 7969.048236 6566.4648 3781.027543 8769.86091 8126.672952 1.003589282 0.929350802 0.986776032 0.967301127 1.058775807 0.980604029 0.808013912 0.465261438 1.079145299 1 12.98844912 -4.319814076 1.955766519 0.996780675 0.343884326 0.941732561 0.0409032 0.084203253 0.370819106 0.004533753 0.09431527 4.79E-05 4.319814076 -0.652896349 down TDNSSLS(ph)SPLNPK ddPTM_HeLa_CUDC101_4h_R1 1 TDNSSLSSPLNPK 13 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 TDNSS(0.002)LS(0.499)S(0.499)PLNPK 160.18 6.00E-05 46371000 3994.6 4162.9 4697.4 4045.2 4057.8 5032.7 3301.1 920.52 4870.9 5138 TRUE FALSE FALSE 3526.359043 4291.154015 4951.355653 4210.180741 3758.464178 4936.709633 3428.424533 1025.308276 4670.11944 5107.438947 0.690435868 0.840177251 0.969440008 0.824323263 0.735880393 0.966572422 0.671260992 0.200748024 0.91437597 1 12.31838434 -4.319749281 2.818782235 0.853577077 0.124613959 0.808736375 0.097796152 0.146276128 1.708991783 0.017508601 0.227600769 4.79E-05 4.319749281 -0.728963118 down SSATVTGEPPSYSSGSDS(ph)SK ddPTM_HeLa_CUDC101_4h_R1 1 SSATVTGEPPSYSSGSDSSK 20 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 SSATVTGEPPSYS(0.005)S(0.142)GS(0.179)DS(0.605)S(0.069)K 232.37 3.34E-44 6043200 2739.7 2028.1 1811.3 1854.4 2169.5 2236.9 1666.5 1542.2 2485.3 2679.9 TRUE FALSE FALSE 2418.556519 2090.583357 1909.224357 1930.030447 2009.460307 2194.234859 1730.777463 1717.757814 2382.854882 2663.959836 0.907880249 0.784765344 0.716686615 0.724496827 0.75431329 0.823674152 0.649701035 0.644813706 0.894478532 1 11.37935662 -7.343275183 0.908964501 0.977812871 0.712974118 0.734946184 0.056812722 0.150251026 0.25004886 0.012767932 0.014522617 4.54E-08 7.343275183 -0.264838753 WEETRTPESQPDT(ph)PPGTPLVSQDEKR ddPTM_HeLa_CUDC101_4h_R1 2 WEETRTPESQPDTPPGTPLVSQDEKR 26 2 M0R3C8;A0A0D9SEV0;M0R000;M0QYI1;A0A0D9SFD6;A0A0D9SFL2;M0QYH2;Q96T60-2;Q96T60 M0R3C8 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase 1 0 WEET(0.001)RT(0.001)PES(0.003)QPDT(0.981)PPGT(0.015)PLVSQDEKR;WEET(0.001)RT(0.004)PES(0.026)QPDT(0.969)PPGTPLVSQDEKR ; 86.073 1.86E-05 48651000 2705.41 3273.2 2859.4 2673.49 4495 3637.6 3209.6 2759.54 3224.3 1937.05 TRUE FALSE FALSE 2388.285941 3374.043412 3013.987813 2782.526478 4163.412805 3568.218841 3333.395347 3073.674879 3091.392989 1925.52834 1.240327598 1.752268892 1.565278345 1.445071682 2.162218399 1.853111567 1.731158808 1.596276105 1.605477792 1 10.91103864 -7.343271231 0.772619957 1.044825576 1.793437291 0.282801421 0.258944878 0.215390359 0.267211879 0.049809962 0.056319863 4.54E-08 7.343271231 0.748611714 IFKFS(ph)RHS(ph)QGLRILGY(ph)TLK ddPTM_HeLa_CUDC101_4h_R1 1 IFKFSRHSQGLRILGYTLK 19 3 Q9NZV8;Q9UK17-2;Q9NSA2;Q9UK17 Q9NZV8 KCND2;KCND3;KCND1 Potassium voltage-gated channel subfamily D member 2;Potassium voltage-gated channel subfamily D member 3;Potassium voltage-gated channel subfamily D member 1 3 0 IFKFS(1)RHS(1)QGLRILGY(0.898)T(0.102)LK 41.554 0.0033813 0 878.64 461.4 499.98 449.29 825.33 646.47 582.77 392.22 547.73 820.31 TRUE FALSE FALSE 775.6471511 475.6151871 527.0104312 467.6139882 764.4470502 634.1396618 605.2476341 436.8687394 525.1523376 815.4307596 0.951211543 0.583268636 0.646296972 0.5734564 0.937476348 0.777674443 0.742242829 0.535752097 0.644018307 1 9.671418569 -7.343125149 6.471664272 0.978134017 0.695143539 0.11032462 0.153440486 0.126776587 8.352475466 0.019479063 0.022221522 4.54E-08 7.343125149 -0.282990477 DTSGGIDLGEEQHPLGT(ph)PTPGR ddPTM_HeLa_CUDC101_4h_R1 2 DTSGGIDLGEEQHPLGTPTPGR 22 0 Q9UIF8-4;Q9UIF8-2;Q9UIF8-5;Q9UIF8-3;Q9UIF8 Q9UIF8-4 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B 1 0 DTSGGIDLGEEQHPLGT(0.731)PT(0.269)PGR;DTSGGIDLGEEQHPLGT(0.863)PT(0.137)PGR ; 106.06 3.59E-05 33821000 2793.43 2603 2553 2489.68 2873.1 2646.7 2262.3 2771.7 2651.7 2425.79 TRUE FALSE FALSE 2465.98837 2683.195345 2691.022902 2591.219912 2661.157137 2596.218607 2349.557669 3087.219124 2542.395804 2411.361293 1.022654041 1.112730536 1.115976652 1.074588001 1.103591214 1.076660978 0.97436982 1.280280617 1.054340472 1 11.23563211 -7.342553076 4.493499827 1.009853661 1.098435245 0.191462448 0.072247068 0.21544705 7.860807392 0.011200826 0.012795317 4.54E-08 7.342553076 0.088581584 VYS(ph)TSVTGSR ddPTM_HeLa_CUDC101_4h_R1 1 VYSTSVTGSR 10 0 Q5T123;Q9H299 Q5T123 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 1 0 VYS(0.985)T(0.01)S(0.005)VTGSR 109.39 0.0086122 8150900 787.19 628.11 551.2 673.28 608.3 437.81 856.67 556.5 629.13 729.83 TRUE FALSE FALSE 694.9167815 647.4613246 580.9995393 700.7392686 563.4269209 429.4595037 889.7120489 619.8497105 603.1969951 725.4889387 0.957859927 0.892448237 0.800838591 0.965885531 0.776616832 0.59195872 1.226361977 0.85438892 0.831435137 1 9.502809808 -7.341557828 2.325669412 0.983229058 0.871372346 0 0.158375777 0.526678935 5.385251574 0.02680771 0.030852942 4.55E-08 7.341557828 -0.111856713 RS(ph)NCYMVWGGDIVASSQRSNR ddPTM_HeLa_CUDC101_4h_R1 1 RSNCYMVWGGDIVASSQRSNR 21 2 A0A0U1RRH1;A0A0X1KG73;A0A087X080;Q15413-3;Q15413-2;Q15413 A0A0U1RRH1 RYR3 Ryanodine receptor 3 1 0 RS(0.535)NCY(0.465)MVWGGDIVASSQRSNR 43.326 0.036467 7806300 1436.9 2588.6 1560.4 2563.4 3783.9 3229.3 2807.6 1827.9 3230.7 389.65 TRUE FALSE FALSE 1268.46876 2668.351698 1644.759944 2667.946532 3504.769236 3167.706483 2915.890072 2035.980747 3097.529179 387.3323445 3.274884678 6.88904951 4.246379027 6.888003468 9.04848068 8.178264811 7.528134725 5.256418103 7.9970837 1 8.597428169 -7.340997627 0.661697869 1.368117698 7.571667281 0 2.442943436 0.204961274 0.194369961 0.383914745 0.431417451 4.56E-08 7.340997627 6.203549582 LDSS(ph)PSVSSTLAAK ddPTM_HeLa_CUDC101_4h_R1 4 LDSSPSVSSTLAAK 14 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LDS(0.198)S(0.796)PS(0.006)VSSTLAAK;LDS(0.059)S(0.858)PS(0.083)VSSTLAAK;LDS(0.034)S(0.965)PS(0.001)VSSTLAAK;LDS(0.083)S(0.913)PS(0.004)VSSTLAAK ;;; 240.73 6.31E-44 887652000 22345.6 17602.7 16083.8 15382.5 16080.6 17501.5 16102.2 13068.7 18467.3 22314.3 TRUE FALSE FALSE 19726.28264 18145.01832 16953.33888 16009.86484 14894.36618 17167.68805 16723.26725 14556.38798 17706.07008 22181.57355 0.889309435 0.818022143 0.764298296 0.721764162 0.671474733 0.773961685 0.7539261 0.656237843 0.798233274 1 14.43707409 -7.340110169 0.62366864 0.982880784 0.706522265 0.51222442 0.067479756 0.142386774 0.122291654 0.011829588 0.013255355 4.57E-08 7.340110169 -0.276358519 TAPPALPTGY(ph)DSEEEEESRPMSYDEKR ddPTM_HeLa_CUDC101_4h_R1 1 TAPPALPTGYDSEEEEESRPMSYDEKR 27 2 P25440-2;P25440;A0A0G2JK44;A0A140T9E9;H0Y6K2;P25440-3;P25440-4;A0A0G2JHN8;A0A140T9I1 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 TAPPALPT(0.172)GY(0.414)DS(0.414)EEEEESRPMSYDEKR 81.379 1.43E-05 35356000 902.56 911.86 911.41 820.74 1053.6 1080.7 920.77 924.23 912.92 683.99 TRUE FALSE FALSE 796.763285 939.9533258 960.6835815 854.2133247 975.8780271 1060.087448 956.2844073 1029.440607 875.2890512 679.9215971 1.171845825 1.382443696 1.412932882 1.25634092 1.435280231 1.559131895 1.406462762 1.514057815 1.287338209 1 9.409224586 -7.339765138 0.426514723 0.991081543 1.506071687 0.49896825 0.112479655 0.243051556 0.116383666 0.03898081 0.042442343 4.57E-08 7.339765138 0.514990144 TLPSTSS(ph)SGSK ddPTM_HeLa_CUDC101_4h_R1 1 TLPSTSSSGSK 11 0 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 0 TLPS(0.014)T(0.023)S(0.023)S(0.466)S(0.466)GS(0.009)K 84.352 0.032819 9235300 3960.8 3225.7 3399.2 3090 4156.4 3186.4 3053.4 1555.7 3708.5 4596 TRUE FALSE FALSE 3496.521028 3325.079994 3582.971034 3216.023556 3849.790653 3125.624729 3171.170661 1732.7946 3555.63406 4568.662788 0.765327009 0.72780158 0.784249397 0.703931042 0.842651522 0.684144327 0.694113531 0.379278288 0.778265813 1 12.15755625 -7.339486602 0.065386346 1.585210595 1.42E-17 0.434485368 0.11124483 9.938704938 0.572890693 6.756912932 6.822340139 4.58E-08 7.339486602 -1.585210595 DQHLNNSSSS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 2 DQHLNNSSSSPQR 13 0 A0A5H1ZRS1;A0A4W8VX11;E7EV93;E9PGW9 A0A5H1ZRS1 PCM1 1 0 DQHLNNSSS(0.002)S(0.998)PQR;DQHLNNSS(0.022)S(0.22)S(0.757)PQR ; 233.97 3.14E-43 20807000 3864.7 2681.7 2348.41 2355.7 3708.3 3161.3 2892.7 2303.1 3956.2 3614.8 TRUE FALSE FALSE 3411.685725 2764.319998 2475.372148 2451.775628 3434.746097 3101.00347 3004.272408 2565.275595 3793.123761 3593.299009 0.949457787 0.769298628 0.688885657 0.682318845 0.955875392 0.862996222 0.836076375 0.713905408 1.055610388 1 11.81109328 -7.339117449 4.288078266 0.978054382 0.790515518 0.577493307 0.083577695 0.136021066 4.635636652 0.014854611 0.01699107 4.58E-08 7.339117449 -0.187538863 TYWES(ph)NGS(ph)AGS(ph)HY(ph)ITLHMR ddPTM_HeLa_CUDC101_4h_R1 1 TYWESNGSAGSHYITLHMR 19 0 A0A669KAU7;A0A669KB95;A0A669KBH4;Q14999;Q14999-2 A0A669KAU7 CUL7 Cullin-7 4 0 T(0.239)Y(0.259)WES(0.787)NGS(0.816)AGS(0.936)HY(0.931)IT(0.031)LHMR 50.215 0.0030076 0 1479.3 1094.7 1094.3 1053.5 1203.7 1297.8 1017.9 1136.9 1736.4 1359.4 TRUE FALSE FALSE 1305.898696 1128.426409 1153.461168 1096.466284 1114.905449 1273.046627 1057.160744 1266.3201 1664.824857 1351.314228 0.966391583 0.835058483 0.853584713 0.81140734 0.825052697 0.942080384 0.782320442 0.937102618 1.232004239 1 10.40014748 -7.33868232 4.273915427 0.985466688 0.852788212 0.468384014 0.091662143 0.10046059 3.409414381 0.00775756 0.008874579 4.58E-08 7.33868232 -0.132678477 EDKSPSEESAPTTS(ph)PESVSGSVPSSGSSGR ddPTM_HeLa_CUDC101_4h_R1 1 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 P54725-2;P54725-3;P54725;A0A494C0B4 P54725-2 RAD23A UV excision repair protein RAD23 homolog A 1 0 EDKSPSEESAPT(0.001)T(0.431)S(0.528)PES(0.028)VS(0.009)GS(0.003)VPSSGSSGR 124.31 4.14E-14 110660000 3166.5 2471.2 2357.4 2842.1 2658.2 2387.4 2524.7 2556.5 3216.1 2860 TRUE FALSE FALSE 2795.32767 2547.334743 2484.848175 2958.013123 2462.109882 2341.864323 2622.078525 2847.521626 3083.530997 2842.988593 0.983235626 0.896005967 0.874026783 1.040459019 0.866028759 0.823733281 0.922296534 1.001594461 1.084608994 1 11.4731926 -7.338374765 5.448308167 0.992556554 0.915421408 0.313620402 0.066800287 0.2260533 11.8659288 0.010322254 0.011782817 4.59E-08 7.338374765 -0.077135145 GSGGGGGPQVPHQS(ph)PPKR ddPTM_HeLa_CUDC101_4h_R1 2 GSGGGGGPQVPHQSPPKR 18 1 Q9NYF3;D6RHW3 Q9NYF3 FAM53C Protein FAM53C 1 0 GSGGGGGPQVPHQS(1)PPKR;GSGGGGGPQVPHQS(1)PPKR ; 79.455 0.0053409 17560200 10748.2 10505.6 10459.2 10365.8 13064.7 11351.1 9404.1 9028.7 8667.1 9045 TRUE FALSE FALSE 9488.312289 10829.26508 11024.65599 10788.56213 12100.94311 11134.59668 9766.819287 10056.49071 8309.83847 8991.199938 1.055288766 1.204429349 1.226160698 1.199902372 1.345865201 1.238388286 1.086264276 1.118481491 0.924219073 1 13.13429795 -7.337642149 2.869057725 1.02257327 1.20719825 0.627267653 0.073239709 0.140818026 2.191947187 0.012927433 0.014877072 4.60E-08 7.337642149 0.18462498 AEPSEVDMNS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 AEPSEVDMNSPK 12 0 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 AEPSEVDMNS(1)PK;AEPS(0.001)EVDMNS(0.999)PK ; 196.8 3.59E-16 271350000 10491.7 10070.6 10287.4 9654.7 8753.4 8630.9 6330.9 2226.33 8606.4 9789.4 TRUE FALSE FALSE 9261.87883 10380.86325 10843.56796 10048.4604 8107.679121 8466.279963 6575.084934 2479.766408 8251.640549 9731.172213 0.951774219 1.066763903 1.114312616 1.032605341 0.833165722 0.870016456 0.675672446 0.254827101 0.847959564 1 13.24839789 -4.318697723 1.148457674 0.992985526 1.00E-15 0.884415273 0.080897209 0.304595268 0.347033541 0.010783436 0.353176438 4.80E-05 4.318697723 -0.992985526 down KVEQNSRPVS(ph)CSGR ddPTM_HeLa_CUDC101_4h_R1 1 KVEQNSRPVSCSGR 14 2 O00401 O00401 WASL Neural Wiskott-Aldrich syndrome protein 1 0 KVEQNS(0.001)RPVS(0.918)CS(0.081)GR 70.615 0.037641 13223000 2053.6 2352.8 2500.3 2609.3 2988.7 2546 2604.4 1438.3 1933.9 1523.5 TRUE FALSE FALSE 1812.880121 2425.286979 2635.473781 2715.718532 2768.229555 2497.439292 2704.85258 1602.030258 1854.183823 1514.438154 1.19706448 1.601443395 1.740232028 1.793218511 1.827892111 1.649086353 1.786043605 1.05783802 1.224337764 1 10.56456695 -7.336847929 2.174634343 1.076208253 1.66859063 0.523668281 0.215758666 0.14466481 1.294408821 0.03785896 0.043652192 4.60E-08 7.336847929 0.592382377 AGSNEDPILAPSGT(ph)PPPTIPPDETFGGR ddPTM_HeLa_CUDC101_4h_R1 3 AGSNEDPILAPSGTPPPTIPPDETFGGR 28 0 Q8IZL8;C9JFV4;E7EV54 Q8IZL8 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 AGSNEDPILAPS(0.055)GT(0.945)PPPTIPPDETFGGR;AGSNEDPILAPS(0.016)GT(0.984)PPPTIPPDETFGGR;AGSNEDPILAPS(0.053)GT(0.947)PPPTIPPDETFGGR ;; 127.73 9.54E-14 178723000 17966.4 14676.1 14201.8 13827.3 17015.9 15792.7 14429 13678.7 16608.8 16218.2 TRUE FALSE FALSE 15860.40583 15128.25325 14969.59227 14391.23706 15760.67096 15491.48056 14985.53136 15235.82792 15924.17823 16121.73343 0.983790354 0.938376342 0.928534908 0.892660651 0.977603992 0.960906632 0.92952358 0.945048992 0.987746033 1 13.97671925 -7.336282363 3.195796519 0.993240072 0.938490266 0.557938377 0.021108833 0.135321216 2.618786024 0.003860521 0.004438895 4.61E-08 7.336282363 -0.054749805 GTSISTK(ac)PPLTK ddPTM_HeLa_CUDC101_4h_R1 2 GTSISTKPPLTK 12 1 C9JW34;C9JGY5;F8WE44;C9JXZ7;C9JTT7;C9J8M3;C9JZI1;P35249-2;P35249 C9JW34 RFC4 Replication factor C subunit 4 0 1 ; GTSISTK(1)PPLTK;GTSISTK(1)PPLTK 228.12 8.02E-23 5711800 7242.6 5481.1 6001.7 5888.9 6568.1 5923.4 5802.8 6509.2 6327.2 6257.5 FALSE TRUE FALSE 6393.633407 5649.966194 6326.170056 6129.074796 6083.584348 5810.421014 6026.61594 7250.181017 6066.390138 6220.280112 1.02786905 0.908313789 1.01702334 0.985337426 0.978024179 0.934109222 0.968865683 1.165571467 0.975259961 1 12.60276383 -10.97671104 4.177191852 0.780391006 1.002771376 0 0.066068629 7294.569723 1613.564632 15040.05007 0.008730226 1.06E-11 10.97671104 0.22238037 NVAEALGHS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 NVAEALGHSPK 11 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 NVAEALGHS(1)PK 111.12 0.0066726 11152000 2902.5 2556 2394.5 1982.4 2197.9 2440.9 2413.7 1622.7 2685 2953.8 TRUE FALSE FALSE 2562.27335 2634.74733 2523.953913 2063.250841 2035.765296 2394.343899 2506.797218 1807.421609 2574.323164 2936.230666 0.872640348 0.897323007 0.859589794 0.702686905 0.693326079 0.815448162 0.853746692 0.615558454 0.876744185 1 11.51974959 -7.335978172 0.252481822 1.041858085 0.680137782 0.478497867 0.078673019 0.903505099 0.219878183 0.117242459 0.123152863 4.61E-08 7.335978172 -0.361720303 S(ph)RNSPLLER ddPTM_HeLa_CUDC101_4h_R1 1 SRNSPLLER 9 1 E7ETY4;E9PC69;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-6;Q7KZI7-3;Q7KZI7-14;Q7KZI7-9;Q7KZI7-13;Q7KZI7-4;Q7KZI7-16;Q7KZI7-5;Q7KZI7-15;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 S(0.994)RNS(0.006)PLLER 74.237 0.031906 315530000 2542.7 2202.5 2047 2025.3 2086.2 1973.1 1955.7 1793.3 1831.7 2524.3 TRUE FALSE FALSE 2244.64856 2270.356414 2157.667012 2107.900488 1932.305182 1935.466405 2031.132004 1997.442023 1756.196551 2509.285351 0.894536988 0.904782078 0.859873115 0.840040168 0.770061955 0.771321765 0.809446404 0.796020278 0.699879171 1 11.29306083 -7.335496426 0.290997394 1.019605248 0.752434106 0 0.094762492 0.312646446 0.090297017 0.028778922 0.030521677 4.62E-08 7.335496426 -0.267171142 SASS(ph)DTSEELNSQDSPPK ddPTM_HeLa_CUDC101_4h_R1 1 SASSDTSEELNSQDSPPK 18 0 O14745;J3QRP6;O14745-2 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 0 SAS(0.046)S(0.601)DT(0.353)SEELNSQDSPPK 330.65 2.77E-169 108830000 4386.1 3237 3521.2 3184.7 3264.2 3464.3 3094.5 3022.2 2887 4217.5 TRUE FALSE FALSE 3871.968007 3336.728133 3711.566723 3314.585831 3023.406469 3398.224249 3213.855902 3366.235032 2767.996638 4192.414122 0.923565252 0.795896597 0.885305367 0.790615081 0.721161217 0.810565023 0.766588368 0.802934761 0.660239317 1 12.03356552 -7.335467682 0.642471905 0.988898588 0.772654644 0 0.110136686 0.174299762 0.157204667 0.0113247 0.01275603 4.62E-08 7.335467682 -0.216243944 MDDLLTSY(ph)VQQLLS(ph)AMNK ddPTM_HeLa_CUDC101_4h_R1 1 MDDLLTSYVQQLLSAMNK 18 0 B9A063;Q6PIF6 B9A063 MYO7B Unconventional myosin-VIIb 2 0 MDDLLT(0.28)S(0.24)Y(0.481)VQQLLS(1)AMNK 61.181 0.013581 22654000 756.61 1236 1019.4 1437.7 1354.8 1722.9 1713.6 722.64 1511.5 290.42 TRUE FALSE FALSE 667.9213227 1274.079695 1074.511848 1496.33562 1254.859103 1690.038553 1779.694126 804.9024166 1449.19533 288.6925689 2.313607604 4.413274993 3.721993439 5.183145607 4.34669693 5.854111726 6.164668986 2.788095376 5.019856713 1 8.173390162 -7.335102874 0.770942898 1.263642409 5.032382418 0.05492863 1.511666496 0.199735546 0.246626121 0.231635078 0.263243828 4.62E-08 7.335102874 3.768740009 GTTITLVLK ddPTM_HeLa_CUDC101_4h_R1 1 GTTITLVLK 9 0 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 0 112.84 0.03501 1036800 1212.3 952.31 652.91 1077.8 775.96 808.07 1001 788.66 872.14 580.83 FALSE FALSE TRUE 1070.196032 981.6495423 688.2082895 1121.757343 718.7189767 792.6574111 1039.608905 878.4378665 836.1900201 577.3751973 1.85355387 1.700193474 1.191960259 1.942856825 1.244804037 1.372863633 1.800577701 1.521433325 1.448261068 1 9.173365324 -9.481362494 1.218067384 0.999443779 1.600855933 0.136870327 0.275643155 0.335952168 0.890548336 0.168540137 0.041099128 3.30E-10 9.481362494 0.601412154 GTTPPPPSWEPNSQTK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GTTPPPPSWEPNSQTKR 17 1 O95835;O95835-2 O95835 LATS1 Serine/threonine-protein kinase LATS1 0 1 ; GTTPPPPSWEPNSQTK(1)R;GTTPPPPSWEPNSQTK(1)R 66.809 0.035485 17865200 1609.63 1359.88 1576.36 2023.24 1705.5 2140.65 1785.9 1846.95 536.28 394.34 FALSE TRUE FALSE 1420.951611 1401.776291 1661.58279 2105.756472 1579.688663 2099.820668 1854.782761 2057.199322 514.1743114 391.9944481 3.624927899 3.576010573 4.23879164 5.371903817 4.029875092 5.356761244 4.731655691 5.248031782 1.311687739 1 8.614689411 -8.576827026 0.299970394 1.44E-16 5.32954775 0.923013157 0.413349241 0.429160744 0.077946643 0.853382141 0.282520841 2.65E-09 8.576827026 5.32954775 (ac)S(ph)KS(ph)ESPKEPEQLR ddPTM_HeLa_CUDC101_4h_R1 1 SKSESPKEPEQLR 13 2 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 2 0 S(0.973)KS(0.941)ES(0.086)PKEPEQLR 85.807 0.00071482 38917000 5610.1 4699.8 4955 4593.4 3694.5 4004 4082.8 3990.7 5568.5 5897.9 TRUE FALSE FALSE 4952.492582 4844.595267 5222.882288 4780.738706 3421.964095 3927.630371 4240.274964 4444.985157 5338.964073 5862.819028 0.844728885 0.826325227 0.890848287 0.815433443 0.583672134 0.669921816 0.723248482 0.758165165 0.91064794 1 12.51737881 -7.334692335 0.288616603 1.025519466 0.651711362 0.624875563 0.071093021 0.671335504 0.191920599 0.086626657 0.091887206 4.63E-08 7.334692335 -0.373808104 IVPEEPS(ph)DSEKDLSGK ddPTM_HeLa_CUDC101_4h_R1 3 IVPEEPSDSEKDLSGK 16 1 Q5SWA1 Q5SWA1 PPP1R15B Protein phosphatase 1 regulatory subunit 15B 1 0 IVPEEPS(0.969)DS(0.03)EKDLS(0.001)GK;IVPEEPS(0.99)DS(0.01)EKDLSGK;IVPEEPS(0.857)DS(0.142)EKDLSGK ;; 72.359 0.016048 35618200 8258.4 7482.9 7454.1 7266.4 8109.7 8655.5 8118.1 5317.7 6593 7188.7 TRUE FALSE FALSE 7290.362871 7713.43928 7857.091193 7562.7552 7511.463588 8490.410759 8431.217836 5923.045473 6321.233749 7145.941293 1.020210295 1.079415428 1.099518016 1.058328762 1.051151035 1.188144488 1.179861056 0.828868477 0.884590775 1 12.80290835 -7.334200857 3.418348224 1.008525163 1.07842646 0.136739709 0.100831575 0.411540818 9.147070453 0.015434638 0.017741195 4.63E-08 7.334200857 0.069901297 GTVTDFPGFDER ddPTM_HeLa_CUDC101_4h_R1 2 GTVTDFPGFDER 12 0 P08758;D6RBE9;E9PHT9;D6RCN3 P08758 ANXA5 Annexin A5;Annexin 0 0 ; ; 247.22 1.39E-54 172063000 7908.9 6841.6 7580.7 6719.4 7491.1 6725.5 7039.6 6608.3 7498.2 7470.9 FALSE FALSE TRUE 6981.830731 7052.381587 7990.535572 6993.446176 6938.496477 6597.222293 7311.11973 7360.56216 7189.121022 7426.462755 0.940128694 0.949628621 1.07595444 0.941692756 0.93429358 0.88833978 0.984468646 0.991126247 0.96804108 1 12.8584595 DLFNGLDS(ph)EEEKDGEEK ddPTM_HeLa_CUDC101_4h_R1 3 DLFNGLDSEEEKDGEEK 17 1 Q96S90;Q96S90-2 Q96S90 LYSMD1 LysM and putative peptidoglycan-binding domain-containing protein 1 1 0 DLFNGLDS(1)EEEKDGEEK;DLFNGLDS(1)EEEKDGEEK;DLFNGLDS(1)EEEKDGEEK ;; 81.992 0.0062126 100453300 9955.5 7807.9 7171.6 6838.9 5803 7391.8 6276.2 6137.7 9009 10449.9 TRUE FALSE FALSE 8788.531382 8048.452144 7559.318389 7117.819902 5374.924251 7250.813731 6518.275136 6836.390959 8637.645207 10387.74353 0.846048168 0.77480274 0.727715155 0.685213288 0.517429434 0.698016245 0.627496734 0.658120884 0.831522764 1 13.34259468 -7.332642403 0.536453623 0.982441427 0.615660986 0.718861625 0.067514655 0.17398033 0.11716873 0.019142826 0.021361351 4.65E-08 7.332642403 -0.366780441 LMMNDNDISSS(ph)TS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 LMMNDNDISSSTSR 14 0 Q9NYK1 Q9NYK1 TLR7 Toll-like receptor 7 2 0 LMMNDNDIS(0.032)S(0.159)S(0.809)T(0.286)S(0.714)R 108.66 0.037527 15824000 123.1 0 48.782 0 0 0 116.05 60.811 0 120.55 TRUE FALSE FALSE 108.6704046 0 51.41930248 0 0 0 120.5260874 67.73347843 0 119.8329632 0.906849014 0 0.429091471 0 0 0 1.005784086 0.565232442 0 1 6.904881004 -7.33261256 7.32095708 0.957676467 0.28646225 0 0.431819634 0.17182939 15.6052415 0.055048375 0.062848131 4.65E-08 7.33261256 -0.671214218 VVSISSEHLEPIT(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 1 VVSISSEHLEPITPTK 16 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 0 VVSISSEHLEPIT(0.979)PT(0.021)K 111.63 0.0021178 8923200 5579.2 2213.4 2283.7 1580.2 5948.6 4737.8 4039.9 3817.7 4630.8 4527.3 TRUE FALSE FALSE 4925.214634 2281.59223 2407.16373 1644.647386 5509.783629 4647.434359 4195.720296 4252.291536 4439.916464 4500.371418 1.094401812 0.506978651 0.534881126 0.365447034 1.224295312 1.032677956 0.932305338 0.944875687 0.986566674 1 12.13582836 -7.332596893 24.99970205 1.044578776 0.796687879 0.155613084 0.250033892 211.3652711 74257.9919 0.045709084 0.052270326 4.65E-08 7.332596893 -0.247890897 ATLSSTSGLDLMSESGEGEIS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 2 ATLSSTSGLDLMSESGEGEISPQR 24 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;H0YDG6 E9PMS6 LMO7 LIM domain only protein 7 1 0 ATLSSTS(0.001)GLDLMS(0.006)ES(0.119)GEGEIS(0.873)PQR;ATLSSTSGLDLMSES(0.011)GEGEIS(0.989)PQR ; 188.94 2.05E-15 32930000 2894 2060.14 2046 2010.83 2295 2450.5 2158.8 2190.48 2546.2 2642.3 TRUE FALSE FALSE 2554.769707 2123.610472 2156.612949 2092.840339 2125.702422 2403.760795 2242.065639 2439.835389 2441.244558 2626.583482 0.972658864 0.808506749 0.821071542 0.79679186 0.809303202 0.915166341 0.853605322 0.928900759 0.929437261 1 11.35897172 -7.330548345 5.837243047 0.987759336 0.846109777 0.576896736 0.04605643 0.090984336 5.837869038 0.007570324 0.008647464 4.67E-08 7.330548345 -0.141649559 KGVTYPSALTY(ph)S(ph)SSK ddPTM_HeLa_CUDC101_4h_R1 1 KGVTYPSALTYSSSK 15 1 B5MD45;Q6UXI7-3;Q6UXI7-2;Q6UXI7-5;Q6UXI7;Q6UXI7-4 B5MD45 VIT Vitrin 2 0 KGVTY(0.003)PS(0.015)ALT(0.015)Y(0.963)S(0.335)S(0.335)S(0.334)K 78.653 0.030651 23764000 1703.2 1303 1224.3 858.45 1415.1 1165.2 1229.7 1285.5 1554.8 1682.2 TRUE FALSE FALSE 1503.553478 1343.143886 1290.489361 893.4613015 1310.710892 1142.975751 1277.129941 1431.836124 1490.710486 1672.1942 0.899150038 0.803222428 0.771734145 0.534304749 0.783826958 0.683518548 0.763744989 0.856261865 0.891469715 1 10.70752669 -7.330355563 1.222421011 0.967196382 0.7243831 0.524996852 0.083815276 0.19764118 0.573683188 0.016865527 0.019425674 4.67E-08 7.330355563 -0.242813282 GVDDLDFFIGDEAIEKPTYATK ddPTM_HeLa_CUDC101_4h_R1 2 GVDDLDFFIGDEAIEKPTYATK 22 1 P61158;B4DXW1;F8WDR7 P61158 ACTR3 Actin-related protein 3 0 0 ; ; 235.37 6.98E-46 36139000 4805.3 4355.4 4405.9 4524 4538 4278.7 3435 4193.3 3832.6 5523.3 FALSE FALSE TRUE 4242.030018 4489.584712 4644.096281 4708.508274 4203.240781 4197.090926 3567.489101 4670.648322 3674.618606 5490.447166 0.772620133 0.81770839 0.845850282 0.857581929 0.765555273 0.764435172 0.649762941 0.850686325 0.669274923 1 12.42270794 -13.52287875 0.226247171 2.198673034 0.755574298 0 0.120500568 20.9979017 0.268875235 11.13795311 0.044038579 3.00E-14 13.52287875 -1.443098736 GVDEATIIDILTKR ddPTM_HeLa_CUDC101_4h_R1 2 GVDEATIIDILTKR 14 1 P04083;Q5T3N1;Q5T3N0 P04083 ANXA1 Annexin A1;Annexin 0 0 ; ; 122.1 0.0013972 9912300 14104.3 13229 15253.2 15514.2 15897.8 16789.9 15085.3 15524.9 17823.5 18265.9 FALSE FALSE TRUE 12451.01533 13636.56981 16077.83413 16146.93613 14725.05097 16469.66063 15667.14507 17292.19186 17088.80779 18157.25361 0.685732303 0.751026014 0.885477202 0.889282954 0.81097347 0.907056815 0.862858745 0.952357236 0.941155978 1 14.14825838 -5.240562495 22.09878547 0.843831665 0.902967756 0.072147176 0.087414803 537.8911199 569365.5443 0.017312003 0.044049937 5.75E-06 5.240562495 0.059136091 GVDEVTIVNILTNR ddPTM_HeLa_CUDC101_4h_R1 1 GVDEVTIVNILTNR 14 0 P07355;P07355-2;H0YN42;H0YMU9;H0YMD0;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YMW4 P07355 ANXA2 Annexin A2;Annexin 0 0 116.71 0.010796 12990000 2049.9 2121.2 2281 2169.3 3830.4 3019.1 3101.3 2393.2 3016.9 3196.8 FALSE FALSE TRUE 1809.613829 2186.551658 2404.31776 2257.773431 3547.839023 2961.515698 3220.91818 2665.632214 2892.542105 3177.785291 0.569457551 0.68807407 0.756601702 0.710486463 1.1164502 0.931943296 1.013573254 0.838833329 0.91023837 1 11.63380594 -5.775679883 24.99039324 0.774174961 0.974851223 0.37395931 0.128487174 260.543018 457221.8955 0.025890519 0.047090992 1.68E-06 5.775679883 0.200676262 EIEY(ph)VETVTS(ph)RQS(ph)EIQK ddPTM_HeLa_CUDC101_4h_R1 1 EIEYVETVTSRQSEIQK 17 1 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 3 0 EIEY(0.514)VET(0.486)VT(0.488)S(0.516)RQS(0.995)EIQK 56.529 0.037758 19464000 726.36 1179 966.97 1147.4 1654.3 1492.5 1254.5 791.4 1036.1 368.92 TRUE FALSE FALSE 641.2171819 1215.323593 1019.247323 1194.195931 1532.265585 1464.033049 1302.886485 881.4897771 993.3915195 366.7256474 1.748492876 3.313985812 2.779318355 3.256374186 4.178234044 3.992175239 3.552755294 2.403676381 2.708813868 1 8.518557356 -7.32746408 0.957532278 1.186257817 3.537568091 0.436827826 0.703349916 0.157078753 0.28734116 0.119560529 0.137342079 4.70E-08 7.32746408 2.351310274 DNQESS(ph)DAELSS(ph)SEYIK ddPTM_HeLa_CUDC101_4h_R1 1 DNQESSDAELSSSEYIK 17 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 DNQES(0.099)S(0.901)DAELS(0.157)S(0.802)S(0.042)EYIK 137.13 0.0021158 11036000 3516 2590.1 2290.1 2266 2258.7 3135 2517.6 3044.2 3182.8 3306.3 TRUE FALSE FALSE 3103.85981 2669.897911 2413.909733 2358.417274 2092.080201 3075.205098 2614.704675 3390.739423 3051.603637 3286.633981 0.944388645 0.812350242 0.734462598 0.717578315 0.636541889 0.935670086 0.795557002 1.031675399 0.928489042 1 11.68239508 -7.326926838 2.928827853 0.976969158 0.799210528 0.287423116 0.106311914 0.210905239 3.4460024 0.018774154 0.021680567 4.71E-08 7.326926838 -0.177758631 GVEEEEEDGEMRE ddPTM_HeLa_CUDC101_4h_R1 7 GVEEEEEDGEMRE 13 1 P62306 P62306 SNRPF Small nuclear ribonucleoprotein F 0 0 ;;;;;; ;;;;;; 269.33 2.39E-84 431240000 13250.32 11968.2 10834.06 11440.87 12341.65 11859.04 10926.57 13288.07 11563.79 12163.61 FALSE FALSE TRUE 11697.13758 12336.92606 11419.78205 11907.47813 11431.23107 11632.84857 11348.01147 14800.73018 11087.12568 12091.26031 0.96740433 1.02031763 0.944465818 0.984800412 0.945412701 0.962087349 0.938530077 1.224084984 0.916953684 1 13.56167701 -4.25587598 24.97287562 0.977620063 1.22408509 0.854486518 0.031727096 136.7278221 613722.415 0.003601275 0.042137942 5.55E-05 4.25587598 0.246465028 AGAASPLNS(ph)PLS(ph)SAVPSLGK ddPTM_HeLa_CUDC101_4h_R1 1 AGAASPLNSPLSSAVPSLGK 20 0 E7EPJ7;O75962-5;O75962-4;O75962 E7EPJ7 TRIO Triple functional domain protein 2 0 AGAAS(0.087)PLNS(0.933)PLS(0.766)S(0.213)AVPS(0.001)LGK 120.59 0.00023837 20751000 3003.7 2416.3 2036 2329.3 2705 2706.4 2719.3 1983.8 2243.8 2742.8 TRUE FALSE FALSE 2651.610839 2490.743339 2146.072319 2424.298922 2505.457539 2654.779929 2824.184312 2209.627773 2151.309614 2726.485704 0.972537958 0.913536182 0.787120327 0.889166196 0.918932946 0.973700293 1.035833164 0.81043072 0.789041223 1 11.41282688 -7.326584761 3.629683217 0.988129831 0.90716958 0 0.092207408 0.271066998 6.921904764 0.01210277 0.013931516 4.71E-08 7.326584761 -0.080960251 GVEGLIDIENPNR ddPTM_HeLa_CUDC101_4h_R1 2 GVEGLIDIENPNR 13 0 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 0 ; ; 123.01 0.010535 10739400 1855.91 1680.01 1593.46 1175.34 1581.06 1254.33 1286.92 1433.16 1733.37 1556.73 FALSE FALSE TRUE 1638.363043 1731.769117 1679.607268 1223.275445 1464.428354 1230.405745 1336.556935 1596.305141 1661.919755 1547.470501 1.058736204 1.119096691 1.085388876 0.790500009 0.946336847 0.795107722 0.863704306 1.03155772 1.073958925 1 10.59569619 -6.272186394 24.99497639 1.040677389 0.882598259 0.594626884 0.073472675 421.6388765 980629.5652 0.011180207 0.017182742 5.34E-07 6.272186394 -0.15807913 GVEICIATPGR ddPTM_HeLa_CUDC101_4h_R1 1 GVEICIATPGR 11 0 P17844-2;P17844;J3KTA4;J3QSF1;J3KRZ1;A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 P17844-2;A0A1X7SBZ2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 0 0 123.86 0.0022967 0 474.39 524.72 413.92 654.97 738.07 694.64 708.99 543.01 511.99 445.15 FALSE FALSE TRUE 418.7827233 540.8860013 436.2977672 681.6825076 683.6240465 681.3908993 736.3359818 604.8240635 490.8855555 442.502228 0.94639687 1.222335091 0.98597869 1.540517684 1.544905321 1.539858686 1.664027739 1.36682716 1.109340303 1 8.789540909 -6.260751275 24.83714999 0.997327722 1.539844548 0.833334998 0.105492928 13.45604866 485692.7875 0.014921305 0.023803034 5.49E-07 6.260751275 0.542516826 TAAKGEAAAERPGEAAVAS(ph)SPSK ddPTM_HeLa_CUDC101_4h_R1 2 TAAKGEAAAERPGEAAVASSPSK 23 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 TAAKGEAAAERPGEAAVAS(0.641)S(0.336)PS(0.023)K;TAAKGEAAAERPGEAAVAS(0.766)S(0.188)PS(0.046)K ; 89.029 0.00023265 82529000 7113.1 9454.8 8298.4 8048.3 12080.4 9153.1 8077.7 7704.9 9335.6 5648.6 TRUE FALSE FALSE 6279.313201 9746.091181 8747.036605 8376.544462 11189.25296 8978.519868 8389.259595 8581.994672 8950.782617 5615.001876 1.118310081 1.735723584 1.557797628 1.491815078 1.992742515 1.599023485 1.494079571 1.528404596 1.594083638 1 12.45507079 -7.325830517 5.213263538 1.052454415 1.628118731 0.307327864 0.22265355 0.071618526 3.892922929 0.02512652 0.028752388 4.72E-08 7.325830517 0.575664316 KKEVDATS(ph)PAPSTSSTVK ddPTM_HeLa_CUDC101_4h_R1 1 KKEVDATSPAPSTSSTVK 18 2 H3BM18;X6RHM1;Q16666-3;Q16666-2;Q16666;Q16666-6 H3BM18 IFI16 Gamma-interferon-inducible protein 16 1 0 KKEVDAT(0.367)S(0.633)PAPSTSSTVK 74.308 0.012459 22952000 2500.1 2682.9 2116.1 2997.2 2726.1 2448.5 2306.7 1741.5 2184.4 2337.1 TRUE FALSE FALSE 2207.042068 2765.556969 2230.502767 3119.438771 2525.001034 2401.798942 2395.670192 1939.745321 2094.358107 2323.198825 0.95000137 1.190409077 0.960099817 1.34273431 1.086863942 1.033832712 1.031194647 0.834945894 0.901497575 1 11.18189691 -7.323147257 24.99959148 0.976389512 1.072884055 0.140316827 0.128952409 374.1648488 151583.6897 0.021086402 0.024113219 4.75E-08 7.323147257 0.096494543 ET(ph)T(ph)EVDLLT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ETTEVDLLTK 10 0 C9JHK9;C9JZV3;Q9UG63;Q9UG63-2 C9JHK9 ABCF2 ATP-binding cassette sub-family F member 2 3 0 ET(1)T(1)EVDLLT(1)K 54.608 0.0033484 0 2452.6 4954.6 3407.9 5781.3 7340.2 7088.2 5511.5 3216.5 5794.6 309.89 TRUE FALSE FALSE 2165.109946 5107.245353 3592.141382 6017.086403 6798.72807 6953.004395 5724.080401 3582.653358 5555.744135 308.0467605 7.028510679 16.57944834 11.66102632 19.53302931 22.0704417 22.57126283 18.58185553 11.63022573 18.03539218 1 8.267005554 -7.322330299 0.798541823 2.319069036 19.19309205 0.153150828 6.064394133 0.173980585 0.228396708 0.905016628 1.037991306 4.76E-08 7.322330299 16.87402302 KVPT(ph)IILS(ph)VS(ph)Y(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 KVPTIILSVSYK 12 1 R4GN78;F8VR14;H0YI72;Q7Z6G8-9;Q7Z6G8-8;Q7Z6G8-10;Q7Z6G8-7;Q7Z6G8-2;Q7Z6G8-5;Q7Z6G8-4;Q7Z6G8-3;Q7Z6G8-6;Q7Z6G8 R4GN78 ANKS1B Ankyrin repeat and sterile alpha motif domain-containing protein 1B 4 0 KVPT(1)IILS(1)VS(1)Y(1)K 61.235 0.026014 2774000 2684.4 2231.7 1949.2 2172.8 2553 2543.2 2212.9 2145.7 2572.5 2404.7 TRUE FALSE FALSE 2369.738701 2300.456032 2054.579648 2261.416176 2364.670276 2494.692697 2298.252294 2389.957815 2466.460461 2390.396737 0.991357905 0.962374151 0.859514078 0.946042195 0.989237577 1.043631234 0.961452239 0.999816381 1.031820544 1 11.22303437 -7.321645444 5.086526197 0.99612377 0.964871746 0.135396577 0.045594661 0.423127432 22.72200088 0.008134574 0.009320386 4.77E-08 7.321645444 -0.031252024 GVESVFDIMEMEDEER ddPTM_HeLa_CUDC101_4h_R1 3 GVESVFDIMEMEDEER 16 0 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 ;; ;; 276.18 2.81E-85 38128600 6601.8 4478.1 4360.3 4415.4 4457.8 4909 4238.3 3290.66 5110.2 4586.9 FALSE FALSE TRUE 5827.947012 4616.064953 4596.031007 4595.479097 4128.956975 4815.369004 4401.772651 3665.255433 4899.555393 4559.616915 1.278165934 1.012379996 1.007986217 1.007865174 0.905549096 1.056090697 0.965382122 0.803851618 1.074554175 1 12.1546969 -7.027032052 15.37816402 1.132090216 0.96647273 0.373813007 0.091500234 5.849364695 3327.550609 0.019677639 0.024241831 9.40E-08 7.027032052 -0.165617486 ISQRDPS(ph)PESNK ddPTM_HeLa_CUDC101_4h_R1 2 ISQRDPSPESNK 12 1 E7EX82;Q8NDX5-2;Q8NDX5;Q8NDX5-7;Q8NDX5-3 E7EX82 PHC3 Polyhomeotic-like protein 3 1 0 ISQRDPS(0.922)PES(0.078)NK;ISQRDPS(0.5)PES(0.5)NK ; 179.83 4.31E-07 86675000 11588.9 10896.4 11313.7 11343.6 11306.3 10343.9 11064.7 11352 11052.6 9864.3 TRUE FALSE FALSE 10230.46671 11232.10517 11925.35284 11806.24104 10472.25677 10146.60734 11491.46919 12644.26579 10597.00715 9805.626705 1.043326145 1.145475502 1.216174468 1.204027177 1.067984443 1.034773977 1.171926031 1.289490838 1.080706769 1 13.25939412 -7.320491341 2.942039532 1.018003541 1.158124287 0.366484041 0.071139205 0.183539736 3.040538187 0.012891032 0.014919882 4.78E-08 7.320491341 0.140120745 YPDVAS(ph)PTLR ddPTM_HeLa_CUDC101_4h_R1 3 YPDVASPTLR 10 0 A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-4;Q8IVL1-8;Q8IVL1-9;Q8IVL1-10;Q8IVL1-13;Q8IVL1-12;Q8IVL1-11;Q8IVL1-3;Q8IVL1-2;Q8IVL1;Q8IVL1-5;E9PNV5 A0A0A0MTL4 NAV2 Neuron navigator 2 1 0 YPDVAS(0.5)PT(0.5)LR;YPDVAS(0.615)PT(0.385)LR;YPDVAS(0.608)PT(0.392)LR ;; 136.53 0.0016154 118356100 7912.7 6507.1 6100.4 6798.3 6495.5 5840.3 5762.8 5900.6 6906.8 7743 TRUE FALSE FALSE 6985.185301 6707.576038 6430.206077 7075.564059 6016.339906 5728.906008 5985.073126 6572.300453 6622.098781 7696.944292 0.90752707 0.871459606 0.835423232 0.919269231 0.78165304 0.744309143 0.777590807 0.853884373 0.860354256 1 12.91007009 -7.320255164 0.3309164 1.011827883 0.768946551 0.331184857 0.059099474 0.462946742 0.156882411 0.03697357 0.040153656 4.78E-08 7.320255164 -0.242881332 GVGDGTVSWGLEDDEDMTLTR ddPTM_HeLa_CUDC101_4h_R1 3 GVGDGTVSWGLEDDEDMTLTR 21 0 E5RIF1;D6RG00;H0YBX6;I3L0A0;Q13404-8;Q15819;Q13404;Q13404-7;Q13404-2;Q13404-1 E5RIF1 UBE2V2;UBE2V1;TMEM189-UBE2V1 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 0 0 ;; ;; 238.67 2.76E-45 31031800 4694.34 3685.85 3520.08 3709.19 4066.29 4186.33 3814.55 4275.88 4266.77 3647.08 FALSE FALSE TRUE 4144.076581 3799.40667 3710.386172 3860.466801 3766.327888 4106.48273 3961.678471 4762.628895 4090.891935 3625.387006 1.143071505 1.0480003 1.023445543 1.064842676 1.038876093 1.132701895 1.092760156 1.313688411 1.128401445 1 11.82391929 GKGFSVVADT(ph)PELQR ddPTM_HeLa_CUDC101_4h_R1 1 GKGFSVVADTPELQR 15 1 C9J9W2;Q14847;Q14847-2;Q14847-3 C9J9W2 LASP1 LIM and SH3 domain protein 1 1 0 GKGFSVVADT(1)PELQR 101.05 0.006307 50120000 3963 4536.4 4505.3 4737 6386.9 4187.7 4378.5 4078.3 4933.1 3044.9 TRUE FALSE FALSE 3498.463148 4676.161107 4748.870146 4930.195335 5915.751111 4107.8266 4547.380212 4542.557187 4729.75553 3026.788799 1.155833254 1.544924809 1.56894665 1.628853436 1.954464452 1.357156667 1.502377772 1.500784326 1.562631503 1 11.5635723 -7.319752521 2.096176019 1.059122874 1.593380201 0.245396802 0.215893934 0.120553838 1.002096016 0.027870768 0.032337619 4.79E-08 7.319752521 0.534257327 SSPVCSTAPVETEPKLS(ph)PSWNPK ddPTM_HeLa_CUDC101_4h_R1 2 SSPVCSTAPVETEPKLSPSWNPK 23 1 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 0 SSPVCSTAPVET(0.004)EPKLS(0.778)PS(0.218)WNPK;SSPVCSTAPVETEPKLS(0.779)PS(0.221)WNPK ; 96.317 7.07E-05 37820000 3300.4 3740.6 3483.1 3484 4145.3 3676 3608.7 4240.9 3278.8 2665.1 TRUE FALSE FALSE 2913.532115 3855.843452 3671.406922 3626.092579 3839.509478 3605.886425 3747.888768 4723.666914 3143.646476 2649.247867 1.099758219 1.455448356 1.385829906 1.368725299 1.449282842 1.361098171 1.414699174 1.783021881 1.18661848 1 11.37136711 -7.319664351 3.126588014 1.041081618 1.450199262 0.634980507 0.124734142 0.09621007 1.812708532 0.020286504 0.023466965 4.79E-08 7.319664351 0.409117643 LDGLVETPTGYIES(ph)LPR ddPTM_HeLa_CUDC101_4h_R1 4 LDGLVETPTGYIESLPR 17 0 P55209;F5H4R6;P55209-2;F8W020;F8W0J6;F8VXI6;F8VUX1;F8VY35;H0YIV4;F8VV59;B7Z9C2;F8W118;P55209-3;H0YHC3;F8VRJ2 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 1 0 LDGLVET(0.004)PT(0.051)GYIES(0.945)LPR;LDGLVETPT(0.001)GYIES(0.999)LPR;LDGLVETPT(0.001)GYIES(0.999)LPR;LDGLVET(0.001)PT(0.042)GYIES(0.957)LPR ;;; 125.61 0.00028366 40148400 6457.8 4887.3 5654.2 4802.2 5023.2 5281.2 5056.4 5113.3 5272.5 5791.6 TRUE FALSE FALSE 5700.826473 5037.87192 5959.883155 4998.054473 4652.648544 5180.469909 5251.427042 5695.377403 5055.165318 5757.151306 0.990216545 0.875063317 1.035213917 0.868147146 0.808151167 0.899832162 0.912157205 0.989270058 0.878067129 1 12.49113941 -7.319089779 8.42413494 0.995481338 0.911070413 0 0.070155576 0.333010618 45.91694829 0.010204837 0.011661485 4.80E-08 7.319089779 -0.084410924 GVIDYDRDR ddPTM_HeLa_CUDC101_4h_R1 2 GVIDYDRDR 9 1 H0YIQ2;P49750-3;P49750-1;P49750;F8VU51;H0YI23 H0YIQ2 YLPM1 YLP motif-containing protein 1 0 0 ; ; 117.81 0.0078991 21911800 7482.6 5552.7 4161 5864 5673 5436.8 4907.1 4671.9 5177.6 4863.3 FALSE FALSE TRUE 6605.500971 5723.772105 4385.956246 6103.159266 5254.514092 5333.102098 5096.368491 5203.730212 4964.177137 4834.372875 1.366361499 1.183974065 0.907244095 1.262451082 1.086907077 1.103163168 1.054194333 1.076402327 1.026850279 1 12.23911304 TFANFPSGSPVS(ph)ASTLAR ddPTM_HeLa_CUDC101_4h_R1 1 TFANFPSGSPVSASTLAR 18 0 B1AKU2;P98170 B1AKU2 XIAP E3 ubiquitin-protein ligase XIAP 1 0 TFANFPS(0.031)GS(0.098)PVS(0.563)AS(0.192)T(0.115)LAR 104.68 0.00099226 7890500 1058.6 833.69 780.62 1086.1 1024.6 1057.9 805.16 433.07 1054.9 1129.6 TRUE FALSE FALSE 934.5125127 859.3750007 822.8226784 1130.395853 949.0172993 1037.72232 836.2152909 482.3689383 1011.416576 1122.881089 0.832245304 0.765330371 0.732778107 1.006692395 0.845162777 0.924160475 0.744705115 0.429581496 0.900733466 1 10.13298944 -4.3152835 2.231577341 0.895846058 0.340265156 0.703403807 0.08680661 0.250846648 1.556671398 0.014400356 0.261108027 4.84E-05 4.3152835 -0.555580903 down QIT(ph)MEELVR ddPTM_HeLa_CUDC101_4h_R1 1 QITMEELVR 9 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 QIT(1)MEELVR 128.57 0.017544 47723000 2307.6 1676.8 1327.8 1524.4 2103.3 2150.6 1951.1 1534.6 2012.5 2100.6 TRUE FALSE FALSE 2037.106626 1728.460221 1399.584884 1586.571621 1948.143749 2109.580888 2026.354581 1709.292661 1929.543898 2088.105538 0.975576468 0.82776478 0.670265396 0.759813904 0.93297188 1.01028461 0.970427282 0.818585378 0.924064356 1 11.02797892 -7.318706433 6.220844612 0.988924031 0.85830966 0.206603472 0.096577978 0.237320018 19.97793165 0.018115605 0.020722662 4.80E-08 7.318706433 -0.130614371 GVITVK(ac)DGK ddPTM_HeLa_CUDC101_4h_R1 2 GVITVKDGK 9 1 P10809;E7EXB4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 ; GVITVK(1)DGK;GVITVK(1)DGK 126.31 0.0017836 4260500 5063.6 4314.8 3434 4151.5 4553.8 4302.8 3893.2 3666.9 3830 3913 FALSE TRUE FALSE 4470.052484 4447.733874 3619.652427 4320.816114 4217.875246 4220.731259 4043.362028 4084.325074 3672.125779 3889.725302 1.149194901 1.143457064 0.930567623 1.110828087 1.08436327 1.085097515 1.039498092 1.050029181 0.944057869 1 11.92545256 -9.678629794 1.562619973 1.000265482 1.08478124 0.260323586 0.062403381 0.513933238 2.271587384 0.044084669 0.009966445 2.10E-10 9.678629794 0.084515758 GVLFYGPPGCGK ddPTM_HeLa_CUDC101_4h_R1 2 GVLFYGPPGCGK 12 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 175.38 1.34E-05 886580 688.93 655.3 835.65 962.18 968.1 651.69 515.21 686.94 620.68 351.39 FALSE FALSE TRUE 608.1746698 675.4890163 880.8277667 1001.421859 896.6851917 639.260099 535.0818223 765.1384729 595.0953077 349.2999167 1.741124577 1.933836752 2.521694752 2.866939875 2.567092487 1.830118098 1.53186931 2.190491427 1.703680074 1 8.448322488 -8.034408502 0.795668064 1.112966617 2.220543222 0.377441703 0.416583292 0.31035546 0.427966168 0.143759735 0.103129586 9.24E-09 8.034408502 1.107576605 ASLNPSDTPPS(ph)VVNEDFLHDLK ddPTM_HeLa_CUDC101_4h_R1 1 ASLNPSDTPPSVVNEDFLHDLK 22 0 O00116;A0A1B0GWA2;A0A2R8YEL0 O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" 1 0 AS(0.035)LNPS(0.115)DT(0.375)PPS(0.474)VVNEDFLHDLK 70.465 0.0010767 0 1084.9 758.17 704.87 711.35 673.81 769.23 935.31 627.21 861.52 1036.4 TRUE FALSE FALSE 957.7296666 781.528319 742.9774043 740.3619277 624.1043787 754.5582194 971.38522 698.6090511 826.007781 1030.235447 0.929622126 0.758591952 0.721172434 0.718633716 0.605788105 0.732413374 0.942876915 0.678106207 0.801766027 1 10.00875837 -7.317919797 2.309879533 0.972444039 0.734787168 0.362977903 0.096992247 0.142241325 1.436203952 0.015227855 0.017675392 4.81E-08 7.317919797 -0.237656871 EDLVGPEVGAS(ph)PQSGRK ddPTM_HeLa_CUDC101_4h_R1 2 EDLVGPEVGASPQSGRK 17 1 Q86X27-3;Q86X27;H7C2H2 Q86X27-3 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 EDLVGPEVGAS(0.794)PQS(0.206)GRK;EDLVGPEVGAS(0.915)PQS(0.085)GRK ; 67.56 0.015854 49212000 3585.9 3139.9 2753.4 2522.6 3123.5 2811.9 2623.8 2507.3 3186.9 3544.5 TRUE FALSE FALSE 3165.566238 3236.636597 2902.257133 2625.482532 2893.085628 2758.267692 2725.000845 2792.720897 3055.534633 3523.417156 0.898436403 0.918607265 0.823705228 0.745152338 0.821102214 0.78283881 0.773397166 0.792617159 0.867207741 1 11.78275958 -7.317498341 0.442739634 0.994614268 0.76471299 0.578541083 0.048341627 0.228725858 0.115218494 0.01604233 0.0178817 4.81E-08 7.317498341 -0.229901278 ASS(ph)SGPRSPLDQR ddPTM_HeLa_CUDC101_4h_R1 1 ASSSGPRSPLDQR 13 1 O14646-2;O14646 O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 AS(0.165)S(0.634)S(0.165)GPRS(0.036)PLDQR 72.523 0.026402 167310000 8761 8019.8 7798.4 7854.9 8990.7 8301.4 7829.1 7112.5 7456.1 7686.9 TRUE FALSE FALSE 7734.048861 8266.880532 8220.005093 8175.256774 8327.473973 8143.064626 8131.07101 7922.15825 7148.756402 7641.177977 1.012154001 1.081885615 1.075751032 1.069894825 1.089815471 1.065681843 1.06411224 1.036771853 0.93555685 1 12.89957935 -7.317184379 5.643848086 1.00545244 1.069871599 0.679971764 0.025826997 0.05982196 4.20724234 0.002373835 0.002718981 4.82E-08 7.317184379 0.064419159 TTRT(ph)SDVGGYYYEK ddPTM_HeLa_CUDC101_4h_R1 2 TTRTSDVGGYYYEK 14 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.06)T(0.06)RT(0.44)S(0.44)DVGGYYYEK;T(0.01)T(0.138)RT(0.426)S(0.426)DVGGYYYEK ; 96.805 0.011038 103839000 6840.4 6756.9 6757 6678.2 8532.5 6595.3 6413.2 4477.2 7208.1 5927.2 TRUE FALSE FALSE 6038.578681 6965.07208 7122.303859 6950.565862 7903.074474 6469.505641 6660.559272 4986.866351 6910.979067 5891.944751 1.024887187 1.182134656 1.208820544 1.179672613 1.341335469 1.09802551 1.130451753 0.846387154 1.172953814 1 12.52452819 -7.31670101 6.156679546 1.011266172 1.150663828 0.013480899 0.127963107 0.241421153 20.49061227 0.019949499 0.022831207 4.82E-08 7.31670101 0.139397656 EVT(ph)S(ph)FAILS(ph)S(ph)EEGK ddPTM_HeLa_CUDC101_4h_R1 1 EVTSFAILSSEEGK 14 0 Q7Z443 Q7Z443 PKD1L3 Polycystic kidney disease protein 1-like 3 4 0 EVT(1)S(1)FAILS(1)S(1)EEGK 70.373 0.032263 5395700 2847.8 3001.4 2696.1 2595.1 3022.7 2953 2773.3 2209.6 3098.1 2656.8 TRUE FALSE FALSE 2513.985201 3093.869576 2841.859321 2700.939395 2799.721443 2896.676445 2880.26711 2461.131932 2970.395007 2640.997235 0.951907547 1.171477779 1.076055394 1.02269679 1.060100104 1.096811616 1.090598306 0.931894929 1.124724769 1 11.36686708 -7.316675765 24.99987723 0.977289661 1.065199056 0 0.074536628 246.2504657 111451.8649 0.009727665 0.011123485 4.82E-08 7.316675765 0.087909395 RS(ph)ES(ph)T(ph)YS(ph)VNS(ph)TGRR ddPTM_HeLa_CUDC101_4h_R1 1 RSESTYSVNSTGRR 14 2 Q68EN5-2;Q68EN5 Q68EN5-2 KIAA0895L Uncharacterized protein KIAA0895-like 5 0 RS(0.995)ES(0.996)T(0.571)Y(0.467)S(0.894)VNS(0.917)T(0.159)GRR 62.469 0.002911 0 609.9 475.01 329.76 433.41 319.4 454.69 214.12 357.3 391.49 678.99 TRUE FALSE FALSE 538.4084465 489.6444951 347.5878231 451.0863332 295.8384983 446.0175458 222.3786801 397.9735877 375.3526165 674.9513373 0.797699652 0.725451552 0.51498205 0.668324231 0.438310856 0.660814375 0.329473649 0.589633009 0.556118043 1 9.39863968 -7.315782899 0.444657357 0.996748681 0.46660333 0.154955419 0.165440178 0.268761148 0.136203991 0.043389043 0.048455814 4.83E-08 7.315782899 -0.53014535 FIVS(ph)PVPESR ddPTM_HeLa_CUDC101_4h_R1 3 FIVSPVPESR 10 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4;H0YH68 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 FIVS(0.998)PVPES(0.002)R;FIVS(0.996)PVPES(0.004)R;FIVS(1)PVPESR ;; 117.25 0.0056549 38996500 6663 5016.6 5600.4 4746 6524.7 5796.9 5111.3 4883.5 5483 5797.4 TRUE FALSE FALSE 5881.97324 5171.1555 5903.174564 4939.562394 6043.38588 5686.333791 5308.444553 5439.4179 5256.988419 5762.916807 1.020659058 0.89731566 1.024337981 0.857128874 1.048667902 0.986711067 0.921138502 0.943865421 0.912209667 1 12.49258348 -7.315653221 24.99966696 1.009755678 0.956749127 0 0.062076533 370.3032662 170757.431 0.00847441 0.009690862 4.83E-08 7.315653221 -0.053006551 GVPVISVK(ac)TSGSK ddPTM_HeLa_CUDC101_4h_R1 2 GVPVISVKTSGSK 13 1 Q15424-2;Q15424;Q15424-4;Q15424-3 Q15424-2 SAFB Scaffold attachment factor B1 0 1 ; GVPVISVK(1)TSGSK;GVPVISVK(1)TSGSK 193.73 4.12E-10 3506800 1598.5 1318.75 1473.92 1349.6 1438.44 1388.46 1420.48 1458.88 1956.66 2067.36 FALSE TRUE FALSE 1411.126253 1359.379124 1553.604574 1404.642521 1332.329147 1361.977439 1475.268389 1624.953002 1876.005647 2055.063251 0.686658307 0.661477998 0.755988689 0.683503304 0.648315397 0.662742345 0.717870065 0.790707051 0.912870028 1 11.00496708 -9.174512595 0.72628663 1.020127849 0.69581103 0.802485992 0.049873798 0.213997684 0.185203217 0.041612325 0.009453076 6.69E-10 9.174512595 -0.324316819 GVQGGEK(ac)ALEICGAQR ddPTM_HeLa_CUDC101_4h_R1 1 GVQGGEKALEICGAQR 16 1 Q9H0U9 Q9H0U9 TSPYL1 Testis-specific Y-encoded-like protein 1 0 1 GVQGGEK(1)ALEICGAQR 127.07 0.0071714 1543500 291.7 328.86 568.48 513.3 683.65 724.35 544.43 512.3 190.16 139.36 FALSE TRUE FALSE 257.5073682 338.9917868 599.2137484 534.2345927 633.2185015 710.5342306 565.4288475 570.6181612 182.3215243 138.5310805 1.858841837 2.447044992 4.325482383 3.856424065 4.570948982 5.129060049 4.08160281 4.119062373 1.316105553 1 7.114065882 -6.984236242 1.115823201 1.290903293 4.485199769 0.922846292 0.38912307 0.084682119 0.206948359 0.083129443 0.112959823 1.04E-07 6.984236242 3.194296476 KITSLSSS(ph)LDTSLDFSK ddPTM_HeLa_CUDC101_4h_R1 2 KITSLSSSLDTSLDFSK 17 1 E9PR71;Q9P2Y5-2;Q9P2Y5 E9PR71 UVRAG UV radiation resistance-associated gene protein 1 0 KITSLSS(0.119)S(0.879)LDT(0.002)SLDFSK;KITSLSS(0.046)S(0.945)LDT(0.008)SLDFSK ; 122.19 0.00016014 40190000 8390.6 6445.3 6670.9 6517.7 7421.6 6986.6 7065.3 6725 7211 7454 TRUE FALSE FALSE 7407.066587 6643.872053 7031.549032 6783.519978 6874.123354 6853.342245 7337.810988 7490.546817 6913.759528 7409.663276 0.999649554 0.896649659 0.948970118 0.91549639 0.927724122 0.924919526 0.990302894 1.010915954 0.933073376 1 12.85519227 -7.315447125 20.91755832 0.999834646 0.944321147 0.047604884 0.038448996 40.31962126 15615.78058 0.005636091 0.006445036 4.84E-08 7.315447125 -0.0555135 TVSGPGTPEPRPAT(ph)PGASSVEQLR ddPTM_HeLa_CUDC101_4h_R1 2 TVSGPGTPEPRPATPGASSVEQLR 24 1 Q9H3U1 Q9H3U1 UNC45A Protein unc-45 homolog A 1 0 T(0.001)VS(0.001)GPGT(0.01)PEPRPAT(0.547)PGAS(0.22)S(0.22)VEQLR;TVSGPGTPEPRPAT(0.87)PGAS(0.065)S(0.065)VEQLR ; 92.034 3.38E-05 85615000 3407.6 2389.1 2575.1 2606.7 2736.6 2302.1 2472.9 2301.4 2572.2 3122.1 TRUE FALSE FALSE 3008.166294 2462.705339 2714.317695 2713.012493 2534.72647 2258.191278 2568.280581 2563.382073 2466.172827 3103.52961 0.969272625 0.793517591 0.874590559 0.874170004 0.816723791 0.727620343 0.827535388 0.825957022 0.794634863 1 11.5996942 -7.315435284 5.391670494 0.986296847 0.820785548 0.14579596 0.072383088 0.070570276 4.580865043 0.007294661 0.008364226 4.84E-08 7.315435284 -0.1655113 S(ph)ESPFRETEPLVSPHQDK ddPTM_HeLa_CUDC101_4h_R1 2 SESPFRETEPLVSPHQDK 18 1 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 S(0.499)ES(0.499)PFRET(0.002)EPLVSPHQDK;S(0.5)ES(0.5)PFRETEPLVSPHQDK ; 160.05 1.55E-05 42463000 4543.6 3453.1 2789.4 2826 4895.3 4215.2 3319.2 3530.2 4146.9 4121.8 TRUE FALSE FALSE 4011.006096 3559.485918 2940.203401 2941.256495 4534.183472 4134.802083 3447.222656 3932.063698 3975.963027 4097.28335 0.978942815 0.868742924 0.71759826 0.717855282 1.106631659 1.009156978 0.841343486 0.959675805 0.970390058 1 12.00045195 -7.315111534 5.829669205 0.990479365 0.886793131 0.126044821 0.113469697 0.32300058 25.00404053 0.020554626 0.023545512 4.84E-08 7.315111534 -0.103686234 KAEGEPQEES(ph)PLKSK ddPTM_HeLa_CUDC101_4h_R1 1 KAEGEPQEESPLKSK 15 2 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 KAEGEPQEES(0.539)PLKS(0.461)K 104.84 0.0031395 329270000 5128.4 5380.9 5034 4912.6 5530 4501.8 4993.8 4258.2 4699 4755.8 TRUE FALSE FALSE 4527.256726 5546.679151 5306.153267 5112.957062 5122.062917 4415.935666 5186.412539 4742.936276 4505.305231 4727.51229 0.957640393 1.173276516 1.122398619 1.081532262 1.083458403 0.9340929 1.097070133 1.003262601 0.952997043 1 12.20686549 -7.314964542 24.99995013 0.979996837 1.069378183 0.34897443 0.062466934 286.2969493 133719.7231 0.010749378 0.012292381 4.84E-08 7.314964542 0.089381346 LSPS(ph)PTTEDPR ddPTM_HeLa_CUDC101_4h_R1 2 LSPSPTTEDPR 11 0 E7EQY4;F6RRE2;E7EV10;Q9BTC8-2;Q9BTC8 E7EQY4 MTA3 Metastasis-associated protein MTA3 1 0 LSPS(0.489)PT(0.489)T(0.021)EDPR;LSPS(0.949)PT(0.044)T(0.007)EDPR ; 163.46 7.46E-05 52574000 8033.8 6122.4 5831.5 5632.6 4758 5884.4 5699.5 8674.4 6647 7503 TRUE FALSE FALSE 7092.090142 6311.023887 6146.768529 5862.321774 4407.011819 5772.164874 5919.331624 9661.858633 6373.007847 7458.371822 0.950889861 0.846166434 0.824143483 0.786005567 0.590881217 0.773917554 0.793649306 1.295438048 0.854477089 1 12.86464501 -7.313227195 2.02259834 0.981310397 0.823772829 0.02966956 0.172694213 0.455860428 3.528428955 0.030558879 0.035543088 4.86E-08 7.313227195 -0.157537568 TSSAFVGKT(ph)PEAS(ph)PEPK ddPTM_HeLa_CUDC101_4h_R1 1 TSSAFVGKTPEASPEPK 17 1 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 2 0 T(0.036)S(0.008)S(0.011)AFVGKT(0.945)PEAS(1)PEPK 182.17 7.19E-10 16445000 9987.7 7401.9 8158.9 7577.4 8817.1 8051.5 7846.1 8228.5 8259.6 8641.7 TRUE FALSE FALSE 8816.956946 7629.943766 8599.994813 7886.439124 8166.680099 7897.931052 8148.726705 9165.199179 7919.135792 8590.298784 1.026385364 0.888204701 1.001128719 0.918063425 0.950686385 0.919401205 0.948596424 1.066924377 0.921869657 1 13.0684926 -7.313213044 24.99973949 1.012459765 0.954495721 0 0.055112007 332.4980357 160551.3175 0.007566874 0.008653056 4.86E-08 7.313213044 -0.057964044 TPNNVVS(ph)TPAPS(ph)PDASQLASSLSSQK ddPTM_HeLa_CUDC101_4h_R1 2 TPNNVVSTPAPSPDASQLASSLSSQK 26 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 E9PMS6 LMO7 LIM domain only protein 7 2 0 T(0.002)PNNVVS(0.533)T(0.465)PAPS(0.992)PDAS(0.007)QLASSLSSQK;T(0.01)PNNVVS(0.598)T(0.497)PAPS(0.855)PDAS(0.04)QLASSLSSQK ; 104.9 2.05E-06 25619000 5365.6 3962.3 4227.7 3767.9 4398.5 4439.9 4085.3 4572.1 4279.1 4811.9 TRUE FALSE FALSE 4736.652502 4084.373767 4456.26225 3921.571248 4074.031418 4355.216305 4242.871389 5092.569383 4102.713687 4783.278605 0.990252271 0.853885818 0.931633429 0.819850059 0.85172363 0.9105086 0.887021589 1.064660833 0.857719992 1 12.22378411 -7.312525767 9.827352716 0.995448894 0.898425319 0 0.076399201 0.467931798 88.33931055 0.010291104 0.011765225 4.87E-08 7.312525767 -0.097023575 TEQELPRPQS(ph)PSDLDSLDGR ddPTM_HeLa_CUDC101_4h_R1 2 TEQELPRPQSPSDLDSLDGR 20 1 P54259 P54259 ATN1 Atrophin-1 1 0 T(0.001)EQELPRPQS(0.738)PS(0.255)DLDS(0.006)LDGR;TEQELPRPQS(0.98)PS(0.02)DLDSLDGR ; 139.12 1.25E-05 45034000 3636 3658.3 3271 3095.7 3834.1 3191.7 2348.3 907.76 4012.2 4235 TRUE FALSE FALSE 3209.793592 3771.007887 3447.840154 3221.956027 3551.266082 3130.82364 2438.874718 1011.095729 3846.815418 4209.810032 0.762455685 0.895766759 0.819001363 0.765344755 0.8435692 0.74369713 0.5793313 0.240176094 0.913774111 1 12.03953942 -4.314865166 1.0552909 0.87365882 1.54E-22 0.891939061 0.066818528 0.523584219 0.48364535 0.014486055 0.500434549 4.84E-05 4.314865166 -0.87365882 down SHDDGNIDLESDS(ph)FLKFDSEPSAVALELPTR ddPTM_HeLa_CUDC101_4h_R1 1 SHDDGNIDLESDSFLKFDSEPSAVALELPTR 31 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;P18583-8 P18583-10 SON Protein SON 1 0 S(0.001)HDDGNIDLES(0.219)DS(0.669)FLKFDS(0.093)EPS(0.018)AVALELPT(0.001)R 48.163 0.011982 4384100 1130.6 893.43 918.8 898.94 884.49 914.91 1036.8 766.48 877.28 1028.6 TRUE FALSE FALSE 998.0727819 920.9555193 968.4731072 935.6026588 819.2429349 897.4596161 1076.789723 853.732985 841.1181471 1022.481841 0.976127635 0.90070599 0.947178784 0.915031075 0.801229813 0.877726704 1.053113786 0.834961513 0.822624044 1 9.997859507 -7.312293404 1.213760703 0.993169626 0.902930611 0 0.083549668 0.412047647 1.177630883 0.012954895 0.015041147 4.87E-08 7.312293404 -0.090239016 RPDS(ph)PTRPTLR ddPTM_HeLa_CUDC101_4h_R1 1 RPDSPTRPTLR 11 2 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 RPDS(0.968)PT(0.016)RPT(0.016)LR 75.89 0.040065 37131000 1500.9 1048.7 1132.3 1310.2 1165.4 1250.4 1201.1 1029.8 1426.8 1307.3 TRUE FALSE FALSE 1324.966777 1081.009204 1193.515563 1363.635619 1079.430764 1226.550703 1247.426829 1147.028269 1367.9867 1299.524121 1.019578441 0.831850049 0.918425094 1.049334596 0.83063542 0.943846046 0.959910485 0.882652542 1.052682807 1 10.3437677 -7.312268727 24.99606845 1.009245395 0.921235087 0.380192546 0.061798129 291.7293827 143461.5344 0.009756269 0.011156726 4.87E-08 7.312268727 -0.088010308 SSLGQSAS(ph)ETEEDTVSVSKK ddPTM_HeLa_CUDC101_4h_R1 3 SSLGQSASETEEDTVSVSKK 20 1 E9PPJ0;Q13435;E9PJ04;H0YCG1 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 SSLGQS(0.131)AS(0.667)ET(0.2)EEDT(0.001)VSVSKK;S(0.005)S(0.005)LGQS(0.18)AS(0.789)ET(0.021)EEDTVSVSKK;SSLGQS(0.024)AS(0.926)ET(0.051)EEDTVSVSKK ;; 124.88 1.15E-05 101020000 6338.77 6867.5 5874.9 5740.29 7211 6786.2 5907.21 5362.42 7527.3 5772.9 TRUE FALSE FALSE 5595.74899 7079.079535 6192.514865 5974.403838 6679.058896 6656.764542 6135.053068 5972.856217 7217.021508 5738.562534 0.975113359 1.233598047 1.079105582 1.041097627 1.163890584 1.160005577 1.069092309 1.040827939 1.257635769 1 12.48647368 -7.312168233 24.99713171 0.988247947 1.110617203 0 0.102811872 208.8193629 102897.2899 0.009659451 0.011046014 4.87E-08 7.312168233 0.122369256 TGSGQGPS(ph)STGQPGR ddPTM_HeLa_CUDC101_4h_R1 2 TGSGQGPSSTGQPGR 15 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 T(0.073)GS(0.049)GQGPS(0.803)S(0.074)T(0.001)GQPGR;TGS(0.013)GQGPS(0.661)S(0.214)T(0.111)GQPGR ; 151.11 0.00019891 13317700 722.1 983.25 767.86 1065.25 844.03 843.96 818.57 493.54 555.85 634.68 TRUE FALSE FALSE 637.4565326 1013.542767 809.3728342 1108.695499 781.7675884 827.8628691 850.1425191 549.7225986 532.9376277 630.9048951 1.010384509 1.606490574 1.282876136 1.757310029 1.239121133 1.312183303 1.347497104 0.871324035 0.844719437 1 9.301278734 -7.31127366 16.64061469 1.004897769 1.353436228 0.385087489 0.224739333 7.159961032 2390.505012 0.035588037 0.040695002 4.88E-08 7.31127366 0.348538459 WAHDKFSGEEGEIEDDESGT(ph)ENR ddPTM_HeLa_CUDC101_4h_R1 1 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFSGEEGEIEDDES(0.278)GT(0.722)ENR 83.733 0.00049632 12852000 816.3 805.09 887.61 749.56 853.08 734.03 834.92 679.31 902.58 705.44 TRUE FALSE FALSE 720.6145514 829.8938686 935.5968815 780.1302967 790.149988 720.0296007 867.1231441 756.6399045 865.3752704 701.2440115 1.027623109 1.183459473 1.334195895 1.112494772 1.126783224 1.026788948 1.236549803 1.0789966 1.23405727 1 9.453772735 -7.309542504 6.000294665 1.012532865 1.158998037 0 0.106668035 0.151512652 13.50857495 0.013760172 0.015779524 4.90E-08 7.309542504 0.146465172 LGDVS(ph)PTQIDVSQFGSFK ddPTM_HeLa_CUDC101_4h_R1 2 LGDVSPTQIDVSQFGSFK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 LGDVS(0.99)PT(0.01)QIDVSQFGSFK;LGDVS(0.823)PT(0.177)QIDVSQFGSFK ; 176.11 1.34E-07 274360000 11504.6 8714.4 8504.2 8331.9 8288.1 9274.5 8538.5 7182.5 9176.7 11011.6 TRUE FALSE FALSE 10156.04823 8982.880335 8963.962776 8671.710896 7676.703375 9097.604365 8867.832805 8000.126767 8798.432542 10946.10251 0.927823233 0.820646465 0.818918219 0.792219046 0.701318425 0.831127276 0.8101361 0.730865325 0.80379592 1 13.41812965 -7.30939125 0.888114241 0.982468713 0.772163549 0.317189689 0.067726977 0.135406596 0.215206279 0.00896252 0.010382762 4.90E-08 7.30939125 -0.210305164 LTQYHGGS(ph)LPNVSQLR ddPTM_HeLa_CUDC101_4h_R1 2 LTQYHGGSLPNVSQLR 16 0 Q6UUV7;Q6UUV7-3;H0YK33 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 LT(0.002)QY(0.004)HGGS(0.994)LPNVSQLR;LTQYHGGS(0.998)LPNVS(0.002)QLR ; 91.64 0.0050202 61492000 7033.9 5518.6 5344.4 4950.7 6382.3 5994.3 5928.4 4978.9 6444.1 6368 TRUE FALSE FALSE 6209.396905 5688.621525 5633.33443 5152.610945 5911.490444 5879.968715 6157.060374 5545.677851 6178.47147 6330.122853 0.98092834 0.898658945 0.889924976 0.813982772 0.933866622 0.928886982 0.972660487 0.876077444 0.976042901 1 12.62801778 -7.309300035 4.332929341 0.991678141 0.902948148 0.482939274 0.039595677 0.132047538 5.355977456 0.00706866 0.008156363 4.91E-08 7.309300035 -0.088729992 GVTFNVTTVDTK ddPTM_HeLa_CUDC101_4h_R1 2 GVTFNVTTVDTK 12 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 0 ; ; 224.66 1.72E-21 1693220 776.97 691.44 655.41 761.69 1004.04 627.84 859.69 895.11 1043.57 1087.39 FALSE FALSE TRUE 685.8947544 712.7424468 690.8434471 792.7550105 929.9739695 615.8649981 892.8485313 997.0057042 1000.553603 1080.922156 0.63454593 0.659383697 0.639124144 0.7334062 0.860352399 0.569758881 0.826006319 0.92236587 0.925648158 1 10.07804691 -9.390001865 1.111470709 1.000204582 0.72035149 0.418810801 0.107892202 0.344800161 0.761042404 0.074559002 0.019032461 4.07E-10 9.390001865 -0.279853092 GVTFNVTTVDTK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 GVTFNVTTVDTKR 13 1 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 1 GVTFNVTTVDTK(1)R 170.04 9.14E-07 742030 69.221 0 132.93 0 145.83 0 0 0 142.7 0 FALSE TRUE FALSE 61.10701931 0 140.1165979 0 135.0724114 0 0 0 136.8178456 0 0 GVTFNVTTVDTKR ddPTM_HeLa_CUDC101_4h_R1 2 GVTFNVTTVDTKR 13 1 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 0 ; ; 93.243 0.010208 2052310 434.23 473.27 435.5 263.89 302.156 257.95 423.58 461.55 508.14 398.95 FALSE FALSE TRUE 383.3302176 487.8508877 459.0444473 274.6525748 279.8665539 253.0300335 439.9176225 514.0909864 487.1942541 396.5770277 0.966597132 1.230154179 1.157516486 0.692557954 0.70570541 0.638035024 1.1092867 1.29632064 1.228498426 1 8.631457299 -6.272955252 24.58090697 1.017998051 0.876596897 0.14899479 0.214953626 1153.907789 2463041.511 0.033316465 0.051165688 5.33E-07 6.272955252 -0.141401153 QVAGDAPVEQATAETAS(ph)PVHR ddPTM_HeLa_CUDC101_4h_R1 1 QVAGDAPVEQATAETASPVHR 21 0 A0A087X055;Q92766;Q92766-2;Q92766-4 A0A087X055 RREB1 Ras-responsive element-binding protein 1 1 0 QVAGDAPVEQATAET(0.359)AS(0.641)PVHR 200.97 3.35E-19 9815300 2253.7 1419.9 1325.6 1502.3 1437.1 1637.9 1354.8 1077.7 2040.8 2175.2 TRUE FALSE FALSE 1989.524702 1463.645436 1397.265946 1563.570287 1331.087996 1606.659786 1407.05509 1200.381012 1956.67736 2162.261814 0.920112768 0.676904816 0.646205717 0.72311793 0.615599826 0.743045905 0.650732988 0.555150632 0.904921572 1 11.0783255 -7.309201269 2.784596305 0.967548402 0.658844975 0.849893216 0.054489225 0.062624874 0.930345744 0.009430244 0.010966227 4.91E-08 7.309201269 -0.308703427 IPS(ph)PLQPEMQGTPDDEPSEPEPSPSTLIYR ddPTM_HeLa_CUDC101_4h_R1 1 IPSPLQPEMQGTPDDEPSEPEPSPSTLIYR 30 0 Q96GY3;K7EMY4 Q96GY3 LIN37 Protein lin-37 homolog 1 0 IPS(0.984)PLQPEMQGT(0.016)PDDEPSEPEPSPSTLIYR 102.79 1.44E-09 4629500 578.9 678.52 659.23 591.11 585.14 525.33 492.47 673.12 611.36 553.54 TRUE FALSE FALSE 511.0422196 699.424397 694.8699679 615.2180208 541.975388 515.3102055 511.4647329 749.74526 586.159482 550.2475195 0.928749702 1.271108678 1.262831623 1.118075046 0.984966527 0.936506185 0.929517562 1.36256 1.065265106 1 9.103936926 -7.308561917 24.99849532 0.96635401 1.10879226 0.122942857 0.142843723 524.7256848 278365.5665 0.02469046 0.028234644 4.91E-08 7.308561917 0.14243825 GVTQFGNK(ac)YIQQTK ddPTM_HeLa_CUDC101_4h_R1 2 GVTQFGNKYIQQTK 14 1 O43809 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 0 1 ; GVTQFGNK(1)YIQQTK;GVTQFGNK(1)YIQQTK 436.74 0 15460500 2878.9 2719.6 3087 2790 3168.7 3004.3 2612.1 1973.4 1332.72 1856.2 FALSE TRUE FALSE 2541.439706 2803.387652 3253.892558 2903.788259 2934.951314 2946.997983 2712.849572 2198.043879 1277.784718 1845.15924 1.377355218 1.519320171 1.763475199 1.573733148 1.590622235 1.597151031 1.470252276 1.191248881 0.692506473 1 10.84952961 -8.360287074 0.748108166 1.032402435 1.538982138 0.660715805 0.180125125 0.271331478 0.322570001 0.064509761 0.03489003 4.36E-09 8.360287074 0.506579703 GVTQFGNK(ac)YIQQTKPLTLER ddPTM_HeLa_CUDC101_4h_R1 1 GVTQFGNKYIQQTKPLTLER 20 2 O43809 O43809 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 0 1 GVTQFGNK(1)YIQQTKPLTLER 214.66 7.14E-27 15809000 1937.3 2416.5 1898.3 2255 2834.2 2572.8 2291.4 1934.6 1109.3 872.8 FALSE TRUE FALSE 1710.212631 2490.949501 2000.92784 2346.968647 2625.126713 2523.728127 2379.780066 2154.827044 1063.574184 867.6085468 1.971180018 2.871052285 2.306256488 2.705100884 3.025704072 2.908832717 2.742919113 2.483639715 1.225868727 1 9.760900455 -7.972477607 0.559556441 1.036183056 2.824935909 0.879848255 0.234162403 0.162374017 0.118696197 0.116749548 0.076013493 1.07E-08 7.972477607 1.788752853 GVVDSDDLPLNVSR ddPTM_HeLa_CUDC101_4h_R1 2 GVVDSDDLPLNVSR 14 0 P14625 P14625 HSP90B1 Endoplasmin 0 0 ; ; 242.97 4.56E-44 120391000 3072.6 3103.5 3045.8 2816.1 3378.4 3371.4 3819 2936.1 3247.6 2712.55 FALSE FALSE TRUE 2712.434486 3199.115156 3210.465161 2930.95273 3129.182163 3307.096162 3966.300109 3270.333756 3113.732553 2696.415632 1.005940795 1.186432506 1.1906418 1.086981063 1.160496967 1.226478634 1.470952795 1.212844829 1.154767283 1 11.39682718 -5.682269756 0.394794311 0.986427731 1.409394274 0.381081147 0.099301294 0.933548041 0.210075646 0.029581308 0.161665957 2.08E-06 5.682269756 0.422966542 GVVDSEDLPLNISR ddPTM_HeLa_CUDC101_4h_R1 6 GVVDSEDLPLNISR 14 0 P07900;P07900-2;P08238 P07900;P08238 HSP90AA1;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta 0 0 ;;;;; ;;;;; 218.06 1.62E-24 200750870 9003.79 8002.54 7450.12 7262.46 8319.99 7807.39 8602.5 8159.71 8652.25 8401.29 FALSE FALSE TRUE 7948.379385 8249.088772 7852.896023 7558.65451 7706.240913 7658.477044 8934.301307 9088.578404 8295.600593 8351.318753 0.951751408 0.987758822 0.940318081 0.905085141 0.922757368 0.917038048 1.069807245 1.088280626 0.99332822 1 13.02778832 -4.689707498 7.2074942 0.962669746 1.08165777 0.699317992 0.032715867 0.114024421 9.465243037 0.005331166 0.020163262 2.04E-05 4.689707498 0.118988024 QQSHFAMMHGGTGFAGIDS(ph)SSPEVK ddPTM_HeLa_CUDC101_4h_R1 1 QQSHFAMMHGGTGFAGIDSSSPEVK 25 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 0 QQSHFAMMHGGT(0.007)GFAGIDS(0.331)S(0.331)S(0.331)PEVK 87.659 2.26E-05 78110000 1840.9 1278 1147.6 1231.4 1747.4 1298.4 1507.1 1050.2 1499.6 1692.5 TRUE FALSE FALSE 1625.112493 1317.373665 1209.642727 1281.621815 1618.497783 1273.635183 1565.229352 1169.750523 1437.785853 1682.432935 0.965930029 0.783017045 0.718984218 0.761766956 0.961998395 0.757019883 0.930336847 0.695273196 0.85458732 1 10.71633328 -7.308298625 5.491370792 0.984693134 0.805928089 0.296818836 0.090500582 0.115423629 8.488472682 0.013186015 0.015147399 4.92E-08 7.308298625 -0.178765045 GVVPLAGTDGETTTQGLDGLSER ddPTM_HeLa_CUDC101_4h_R1 2 GVVPLAGTDGETTTQGLDGLSER 23 0 P09972;K7EKH5;C9J8F3;J3KSV6;J3QKP5;A8MVZ9 P09972 ALDOC Fructose-bisphosphate aldolase C;Fructose-bisphosphate aldolase 0 0 ; ; 237.05 1.24E-45 115651000 6470.9 5158.9 4514.1 5364.3 5626.8 4983.4 5082.4 5384.3 5506.5 7071.4 FALSE FALSE TRUE 5712.390911 5317.839594 4758.1459 5583.07934 5211.722174 4888.349948 5278.42987 5997.226948 5279.519739 7029.338998 0.812649797 0.756520577 0.676898056 0.794253818 0.741424219 0.695420999 0.750914115 0.853170824 0.75106916 1 12.77917332 -8.550321659 0.620027384 1.000378365 0.746638728 0 0.088718709 0.253247109 0.197544464 0.031087925 0.01246502 2.82E-09 8.550321659 -0.253739637 GVVPLAGTNGETTTQGLDGLSER ddPTM_HeLa_CUDC101_4h_R1 2 GVVPLAGTNGETTTQGLDGLSER 23 0 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8;H3BR04;H3BMQ8;H3BU78 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 219.03 1.16E-34 20424400 5555.8 4977.6 4740.9 4377.5 4636.9 4700.5 4262.3 4343.2 5452.9 4921.3 FALSE FALSE TRUE 4904.557546 5130.953956 4997.207394 4556.033371 4294.845125 4610.845794 4426.698339 4837.612332 5228.129154 4892.027889 1.00256124 1.048839883 1.021500185 0.931317947 0.877927359 0.942522385 0.904880029 0.988876687 1.068703874 1 12.25621691 -6.239940015 10.41553405 1.006953943 0.925626857 0.633703619 0.035875639 0.278983098 132.8615211 0.004404901 0.007238622 5.76E-07 6.239940015 -0.081327086 GVVVLAK(ac)SYNEQR ddPTM_HeLa_CUDC101_4h_R1 2 GVVVLAKSYNEQR 13 1 B4DK69;P52895;A0A0A0MSS8;P42330;S4R3Z2;P42330-2;P17516;Q04828;H0Y804 B4DK69;A0A0A0MSS8;Q04828 AKR1C2;AKR1C3;AKR1C4;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C3;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C1 0 1 ; GVVVLAK(1)SYNEQR;GVVVLAK(1)SYNEQR 232.56 6.45E-31 3628100 1222.51 960.92 873.74 990.17 979.82 966.59 896.94 963.72 1186.04 1188.22 FALSE TRUE FALSE 1079.209231 990.5248062 920.9770273 1030.553412 907.5406307 948.1539062 931.5352763 1073.425989 1137.150929 1181.152415 0.913691762 0.838608798 0.779727507 0.872498248 0.76835184 0.802736289 0.788666445 0.908795492 0.962746988 1 10.20597943 -7.687473829 0.833204586 0.98297375 0.8138261 0.678416614 0.043601611 0.190464183 0.282026316 0.011717361 0.01076788 2.05E-08 7.687473829 -0.16914765 DSSIIDPGTEQDLPS(ph)PENS(ph)SVKEYR ddPTM_HeLa_CUDC101_4h_R1 1 DSSIIDPGTEQDLPSPENSSVKEYR 25 1 H7C150;H7C183;Q70CQ2-3;Q70CQ2-2;Q70CQ2 H7C150 USP34 Ubiquitin carboxyl-terminal hydrolase 34 2 0 DS(0.001)S(0.002)IIDPGT(0.204)EQDLPS(0.765)PENS(0.489)S(0.476)VKEY(0.063)R 57.768 0.0027172 0 1412.8 800.69 1135.7 951.37 1017.9 1114.6 815.97 1196.5 1316.5 1050.3 TRUE FALSE FALSE 1247.193726 825.3583098 1197.099377 990.1709808 942.8115449 1093.340862 847.4422362 1332.704724 1262.233313 1044.052769 1.194569626 0.790533136 1.146588959 0.9483917 0.903030549 1.047208431 0.811685253 1.276472572 1.208974633 1 10.02797892 -7.307914714 24.99903642 1.091880075 0.985716309 0.148085083 0.149503229 700.5516589 376824.5151 0.024013451 0.027460452 4.92E-08 7.307914714 -0.106163767 QRPDLGS(ph)AQK ddPTM_HeLa_CUDC101_4h_R1 3 QRPDLGSAQK 10 1 A0A3B3IT92;P33991;A0A3B3ITP6;A0A3B3IS57;A0A3B3IU45;E5RFR3 A0A3B3IT92 MCM4 DNA replication licensing factor MCM4 1 0 QRPDLGS(1)AQK;QRPDLGS(1)AQK;QRPDLGS(1)AQK ;; 126.32 0.0018481 444022800 11871.2 10007.2 10649 9448.5 10220.6 8598.7 7207.5 2635.73 11129.2 11318.7 TRUE FALSE FALSE 10479.67593 10315.50997 11224.71715 9833.85067 9466.6467 8434.694124 7485.495689 2935.770849 10670.44967 11251.37587 0.931412838 0.916822093 0.997630626 0.874013168 0.841376807 0.749658906 0.665296029 0.260925498 0.94836843 1 13.45781381 -4.311602138 0.815552882 0.961771314 4.04E-20 0.944212265 0.049938044 0.361347288 0.18108429 0.008172467 0.308115843 4.88E-05 4.311602138 -0.961771314 down ALIQTCLNSPDS(ph)PPRSDPTTDQR ddPTM_HeLa_CUDC101_4h_R1 1 ALIQTCLNSPDSPPRSDPTTDQR 23 1 P11831 P11831 SRF Serum response factor 1 0 ALIQT(0.01)CLNS(0.285)PDS(0.533)PPRS(0.159)DPT(0.007)T(0.007)DQR 45.424 0.038142 49454000 1228.3 950.38 921.03 856.09 1102 917.46 1140.7 878.84 1123 1111.3 TRUE FALSE FALSE 1084.320536 979.6600813 970.8236678 891.0050505 1020.707655 899.9609791 1184.697181 978.8835932 1076.709465 1104.689938 0.981560978 0.88681905 0.878820051 0.806565734 0.923976602 0.814672921 1.072425067 0.886116148 0.974671197 1 10.10942578 -7.307480138 5.077532436 0.991795809 0.896257413 0.262072205 0.068866042 0.188458381 11.50409693 0.011486701 0.013218391 4.93E-08 7.307480138 -0.095538396 GWDSSHEDDLPVYLAR ddPTM_HeLa_CUDC101_4h_R1 2 GWDSSHEDDLPVYLAR 16 0 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 0 0 ; ; 143.64 0.00025691 16336000 5970.6 3927.6 3242.3 3559.8 5102 5086.6 4092.1 3563.7 5563.9 6349.9 FALSE FALSE TRUE 5270.735319 4048.604701 3417.588545 3704.984031 4725.635625 4989.58158 4249.933668 3969.377203 5334.553687 6312.130512 0.835016847 0.641400664 0.541431857 0.58696252 0.748659366 0.790475034 0.673296228 0.628849038 0.845127279 1 12.62391132 -7.705048327 1.301831829 0.953059613 0.661404974 0.615999914 0.082790122 0.160295538 0.562692548 0.019527973 0.019000514 1.97E-08 7.705048327 -0.291654639 GWEEGVAQMSVGQR ddPTM_HeLa_CUDC101_4h_R1 1 GWEEGVAQMSVGQR 14 0 Q1JUQ5;Q5W0X3;P62942 Q1JUQ5 FKBP12-Exip2;FKBP1A Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase FKBP1A 0 0 115.33 0.011136 11889000 1153.1 1018.4 737.23 1031.3 1040.9 681.22 959.76 994.17 977.78 914.06 FALSE FALSE TRUE 1017.935366 1049.775697 777.0868838 1073.360872 964.1148808 668.2268635 996.7782647 1107.342294 937.4754945 908.6231305 1.120305363 1.155347758 0.855235639 1.181304807 1.061072351 0.735427969 1.09702057 1.218703615 1.03175394 1 9.827538222 DVEDMELS(ph)DVEDDGSK ddPTM_HeLa_CUDC101_4h_R1 8 DVEDMELSDVEDDGSK 16 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK;DVEDMELS(1)DVEDDGSK ;;;;;;; 252.01 4.59E-56 113013100 25651 18685.9 17018.1 16795.8 17192.5 18261.93 16407.3 14148.21 22939.2 25860.3 TRUE FALSE FALSE 22644.22866 19261.59043 17938.14996 17480.80532 15924.24353 17913.61411 17040.13506 15758.78504 21993.63647 25706.48179 0.880876226 0.749289249 0.697806495 0.680015471 0.619464136 0.696852034 0.662873092 0.613027686 0.855567738 1 14.64984455 -7.305331578 0.742033183 0.97634418 0.643368375 0.846962311 0.047011937 0.083044595 0.095570032 0.008342945 0.009652896 4.95E-08 7.305331578 -0.332975805 GVIS(ph)TPVIR ddPTM_HeLa_CUDC101_4h_R1 1 GVISTPVIR 9 0 Q9NZB2-4;Q9NZB2;Q9NZB2-6;A0A494C0Y9;A0A0C4DG79 Q9NZB2-4 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 1 0 GVIS(0.5)T(0.5)PVIR 119.75 0.0057593 17411000 13146 10740 10018 9484.2 11716 12164 8824.2 3995.3 9379.3 9797.9 TRUE FALSE FALSE 11605.04581 11070.88667 10559.60338 9871.00667 10851.73402 11931.99197 9164.55235 4450.108802 8992.681284 9739.621655 1.191529427 1.136685496 1.084190306 1.013489745 1.11418435 1.225098098 0.940955683 0.456907769 0.923309098 1 13.24965002 -4.308563518 3.070419763 1.098440681 0.389500579 0.822105816 0.08745248 0.089267484 1.305057348 0.011834869 0.143568154 4.91E-05 4.308563518 -0.708940102 down SS(ph)S(ph)VGSSSSYPISPAVSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 S(0.328)S(0.453)S(0.55)VGS(0.28)S(0.253)S(0.113)S(0.021)Y(0.002)PISPAVSR 122.96 0.00081043 254240000 5355.4 3734 3932.7 4022.9 4548.1 4420.8 4118.5 4401.2 4185.9 4452.6 TRUE FALSE FALSE 4727.64813 3849.040114 4145.313658 4186.97125 4212.595724 4336.480606 4277.351925 4902.214818 4013.35543 4426.115737 1.068125736 0.869620304 0.9365579 0.945969672 0.951759053 0.979748579 0.966389534 1.10756589 0.906744348 1 12.11182546 -7.304565533 24.9981884 1.032170485 0.963586713 0 0.070049279 516.980208 299667.7764 0.010182995 0.011644724 4.96E-08 7.304565533 -0.068583772 AGGAS(ph)PAASSTAQPPTQHR ddPTM_HeLa_CUDC101_4h_R1 5 AGGASPAASSTAQPPTQHR 19 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR ;;;; 130.37 2.58E-05 547126500 7964.89 5557.03 6728.34 5509.48 6406.91 6327.62 6292.78 6470.5 7160.59 6744.23 TRUE FALSE FALSE 7031.257668 5728.235508 7092.094413 5734.180408 5934.285014 6206.931191 6535.494633 7207.075565 6865.427449 6704.11502 1.04879729 0.854435744 1.057871828 0.855322498 0.885170525 0.925839007 0.974848226 1.075022661 1.024061704 1 12.71083119 -7.30431695 24.99195341 1.023043169 0.945560825 0.194677381 0.072048503 543.4993422 316786.997 0.012031611 0.01375871 4.96E-08 7.30431695 -0.077482344 MS(ph)EIPSTIVSK ddPTM_HeLa_CUDC101_4h_R1 1 MSEIPSTIVSK 11 0 E9PQV5;Q494V2;Q494V2-2 E9PQV5 CCDC37 Coiled-coil domain-containing protein 37 1 0 MS(0.63)EIPS(0.368)T(0.002)IVSK 97.431 0.032502 22830000 540.76 619.18 572.73 529.81 509.67 530.81 526.78 589.8 502.88 493.32 TRUE FALSE FALSE 477.3729325 638.2562019 603.6935162 551.4179418 472.0726595 520.6856836 547.0980811 656.9404479 482.1510736 490.3857107 0.973464198 1.301539152 1.231058538 1.124457605 0.962655822 1.061788042 1.115648497 1.339640274 0.983207836 1 8.937773131 -7.304303396 24.99531868 0.987469179 1.150229744 0.368935458 0.105138715 402.7317758 234844.3353 0.018668396 0.021348172 4.96E-08 7.304303396 0.162760565 LDSQPQETS(ph)PELPR ddPTM_HeLa_CUDC101_4h_R1 2 LDSQPQETSPELPR 14 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 LDSQPQET(0.064)S(0.936)PELPR;LDS(0.007)QPQET(0.233)S(0.76)PELPR ; 184.51 6.25E-11 769120000 10389.5 10244.2 9652.3 10435.1 11001.9 9943.5 9303.2 8784.2 9003.9 9117.1 TRUE FALSE FALSE 9171.658559 10559.81166 10174.13253 10860.68848 10190.31176 9753.844305 9662.02754 9784.157821 8632.755431 9062.871084 1.012003644 1.165172886 1.122616932 1.198371728 1.124402153 1.076242199 1.066111109 1.079587002 0.952540906 1 13.14575245 -7.301662164 11.06650591 1.005642621 1.118654995 0.665991046 0.041887213 0.452324742 123.7276642 0.007076802 0.008096936 4.99E-08 7.301662164 0.113012374 GYAFIEYEHER ddPTM_HeLa_CUDC101_4h_R1 1 GYAFIEYEHER 11 0 P08621;P08621-2;M0QYR1;P08621-3 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 0 155.26 0.00021821 53386000 4446.6 3244.1 2463.4 3332.6 3261.3 3192.2 2845 2735.8 2964.9 3132.8 FALSE FALSE TRUE 3925.376289 3344.046876 2596.578855 3468.517833 3020.720396 3131.314104 2954.732603 3047.232414 2842.685567 3114.165966 1.260490395 1.073817809 0.833795913 1.113787085 0.969993388 1.005506494 0.948803832 0.978506748 0.912824043 1 11.60463012 -6.98938374 24.94123087 1.125332766 0.979036857 0.03575393 0.109583367 209.027741 491075.7569 0.017978948 0.023616393 1.02E-07 6.98938374 -0.146295909 GYAFNHSADFETVR ddPTM_HeLa_CUDC101_4h_R1 2 GYAFNHSADFETVR 14 0 P61160;F5H6T1;P61160-2 P61160 ACTR2 Actin-related protein 2 0 0 ; ; 108.32 0.003681 12718700 4836.7 4139.9 3379.1 3599.6 4050.7 3335.8 4047.3 3082.4 3536.5 3298.1 FALSE FALSE TRUE 4269.749358 4267.445412 3561.784367 3746.407247 3751.887931 3272.175173 4203.405717 3433.287957 3390.723973 3278.482755 1.30235529 1.301652542 1.086412415 1.142725928 1.144397641 0.998076067 1.282119209 1.04721855 1.03423572 1 11.67881259 -5.504468158 24.04007745 1.154199139 1.117236222 0.013937625 0.115271869 2345.283917 3062407.644 0.019799141 0.043453657 3.13E-06 5.504468158 -0.036962917 HNS(ph)WSSSSR ddPTM_HeLa_CUDC101_4h_R1 2 HNSWSSSSR 9 0 Q96F86;H3BQ37;H3BPW9 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 1 0 HNS(1)WSSSSR;HNS(0.851)WS(0.145)S(0.004)SSR ; 108.98 0.010728 17030200 3384.9 1004.14 1685.62 1410.49 3052.4 1989.45 2679.5 1197.33 2854.7 2571.7 TRUE FALSE FALSE 2988.127153 1035.076363 1776.749716 1468.015879 2827.230533 1951.504556 2782.849213 1333.629207 2737.028058 2556.403414 1.168879347 0.404895549 0.695019302 0.574250477 1.105940681 0.763378951 1.088579837 0.521681829 1.070655767 1 11.3198998 -7.301228265 24.99992762 1.079748602 0.757246318 0.345992927 0.215126852 439.2347158 275976.4459 0.036313843 0.041526763 5.00E-08 7.301228265 -0.322502284 GYAYVEFENPDEAEK ddPTM_HeLa_CUDC101_4h_R1 3 GYAYVEFENPDEAEK 15 0 H3BV80;H3BPG5;H3BMS0;H3BMM9;H3BTC0;Q15287-3;Q15287-2;Q15287 H3BV80 RNPS1 RNA-binding protein with serine-rich domain 1 0 0 ;; ;; 222.99 8.31E-32 35552000 7573.8 6797.3 6591.4 6904.8 8115.4 7186.8 6682.3 6911.8 8685.1 7742.2 FALSE FALSE TRUE 6686.010645 7006.716756 6947.751022 7186.407589 7516.74311 7049.723764 6940.038549 7698.611374 8327.096502 7696.14905 0.868747552 0.910418537 0.902756817 0.933766685 0.976688869 0.916006657 0.901754696 1.000319942 1.081982229 1 12.90992102 -5.976600058 24.91400908 0.930954862 0.944532955 0 0.062811652 1229.186038 1308712.585 0.008296408 0.01503813 1.06E-06 5.976600058 0.013578093 GYDDRDYYSR ddPTM_HeLa_CUDC101_4h_R1 3 GYDDRDYYSR 10 1 P62995;H7C2L4;H7BXF3;P62995-3 P62995 TRA2B Transformer-2 protein homolog beta 0 0 ;; ;; 120.09 0.0059972 1190982000 19548.8 17643.3 17239.3 17810 19274.4 17912.3 18616.3 19510.2 17965.9 15568 FALSE FALSE TRUE 17257.3193 18186.86916 18171.3087 18536.36878 17852.56591 17570.65272 19334.33693 21731.16231 17225.338 15475.40084 1.115145221 1.175211508 1.174206012 1.197795713 1.153609273 1.135392414 1.249359362 1.404239058 1.113078632 1 13.91768916 -1 0.102074922 0.895222271 2.103883393 0.617897632 0.061369679 43.38121786 0.31465019 0.42248423 7.383607092 0.1 1 1.208661121 GYDFESETDTETIAK ddPTM_HeLa_CUDC101_4h_R1 1 GYDFESETDTETIAK 15 0 A0A6I8PRN4;A0A6I8PTT9;Q06210-2;Q06210 A0A6I8PRN4 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 0 0 135.6 0.00017726 0 342.84 344.43 343.01 458.78 428.27 359.72 420.36 351.81 341.72 506.95 FALSE FALSE TRUE 302.6528149 355.04148 361.5541581 477.4910314 396.6773753 352.8589403 436.573426 391.8586283 327.634157 503.9346389 0.600579503 0.704538749 0.717462405 0.94752572 0.787160367 0.700207751 0.866329465 0.777598121 0.650152087 1 8.977092816 -9.575286099 1.379263548 0.999009546 0.745405017 0 0.14054572 0.314168579 1.078181812 0.072904968 0.017343917 2.66E-10 9.575286099 -0.253604529 GYDRYEDYDYR ddPTM_HeLa_CUDC101_4h_R1 3 GYDRYEDYDYR 11 1 Q13595;Q13595-4;Q13595-3 Q13595 TRA2A Transformer-2 protein homolog alpha 0 0 ;; ;; 113.44 0.0074689 86327000 6786.3 7277.5 6949.1 7023.5 9370.1 7323.1 8004.1 10272.1 7239.1 7483.6 FALSE FALSE TRUE 5990.820201 7501.711149 7324.789366 7309.948688 8678.886391 7183.424069 8312.820818 11441.43434 6940.701234 7439.087214 0.80531657 1.008418228 0.984635501 0.982640541 1.166660121 0.965632458 1.117451722 1.53801589 0.933004418 1 12.8609099 -1 0.634132721 0.92641092 47.24601627 0.779528424 0.087847807 69.98411397 0.443470596 0.017935726 4544.317517 0.1 1 46.31960535 LVEQANS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 LVEQANSPK 9 0 O95391 O95391 SLU7 Pre-mRNA-splicing factor SLU7 1 0 LVEQANS(1)PK;LVEQANS(1)PK;LVEQANS(1)PK;LVEQANS(1)PK ;;; 137.01 0.0022654 1265255000 22234.5 21274 23347.7 23859.5 21910.7 20665.8 19773.1 17543.5 19284.1 19237.8 TRUE FALSE FALSE 19628.20562 21929.42672 24609.94728 24832.59354 20294.39131 20271.6343 20535.75509 19540.58113 18489.20124 19123.37271 1.026398738 1.146734264 1.286904128 1.298546753 1.061234941 1.060044931 1.073856343 1.021816675 0.966837886 1 14.22304937 -7.300305189 5.187693323 1.011857417 1.139648651 0.329553851 0.089415361 0.198962183 13.7824056 0.016667634 0.019227272 5.01E-08 7.300305189 0.127791234 HS(ph)SETFSSTTTVTPVS(ph)PSFAHNPK ddPTM_HeLa_CUDC101_4h_R1 1 HSSETFSSTTTVTPVSPSFAHNPK 24 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 2 0 HS(0.488)S(0.122)ET(0.156)FS(0.048)S(0.053)T(0.058)T(0.063)T(0.006)VT(0.01)PVS(0.841)PS(0.155)FAHNPK 62.833 0.015487 12151000 3166.8 1669.3 1656 1791.2 3282.6 2553.2 2383.5 1710.1 2710.7 2621 TRUE FALSE FALSE 2795.592505 1720.729154 1745.528369 1864.252878 3040.449138 2504.501964 2475.432393 1904.770872 2598.963799 2605.410175 1.072995159 0.660444628 0.669962981 0.715531434 1.16697523 0.961269741 0.950112353 0.731082917 0.997525773 1 11.3472948 -7.298998687 24.93495766 1.034469951 0.847307227 0.241477163 0.150672766 594.5265605 394694.2262 0.027401845 0.031335566 5.02E-08 7.298998687 -0.187162724 GYEEWLLNEIR ddPTM_HeLa_CUDC101_4h_R1 2 GYEEWLLNEIR 11 0 O43707;O43707-2;P12814-4;P12814-3;P12814;P12814-2;H9KV75;A0A494C1A0;P35609;P35609-2;A0A494C060;F6THM6 O43707;P12814-4 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 0 0 ; ; 202.96 5.68E-16 74417000 9849.8 7790 5777.3 6849.3 5599.5 6275.6 6042.2 6150.8 6879.5 7030.4 FALSE FALSE TRUE 8695.221375 8030.000667 6089.638313 7128.644059 5186.436041 6155.903386 6275.249678 6850.98221 6595.924098 6988.582868 1.244203802 1.149017021 0.871369551 1.02004143 0.742129862 0.880851455 0.897928778 0.980310649 0.94381425 1 12.77078422 -6.760974424 24.99810497 1.121067996 0.896311196 0.414300439 0.104412939 8.032604416 431853.0193 0.017899904 0.024438631 1.73E-07 6.760974424 -0.2247568 GYEEWLLNEIRR ddPTM_HeLa_CUDC101_4h_R1 2 GYEEWLLNEIRR 12 1 O43707;O43707-2;P12814-4;P12814-3;P12814;P12814-2;H9KV75;A0A494C1A0;P35609;P35609-2;A0A494C060;F6THM6 O43707;P12814-4 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 0 0 ; ; 147.62 0.00085185 119714000 6287.4 6104.9 4900.8 5347 5900.7 6401.3 5699.1 5274.3 6426.1 4413.8 FALSE FALSE TRUE 5550.400503 6292.984733 5165.752072 5565.073772 5465.417117 6279.205868 5918.916196 5874.704993 6161.213438 4387.546521 1.265035134 1.434283307 1.177366906 1.268379434 1.245665907 1.431142858 1.349026425 1.338949904 1.404250282 1 12.09919871 -9.549540185 0.327782866 0.829259728 1.348182489 0 0.149053567 1.616864396 0.196114187 0.315985489 0.036719053 2.82E-10 9.549540185 0.518922761 GSSS(ph)SSPEHSASSDSTK ddPTM_HeLa_CUDC101_4h_R1 1 GSSSSSPEHSASSDSTK 17 0 Q9P275;A0A075B784 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36;Ubiquitin carboxyl-terminal hydrolase 1 0 GS(0.02)S(0.02)S(0.32)S(0.32)S(0.32)PEHSASSDSTK 93.738 0.0033412 9528000 3745.2 1255.5 1930.7 1780.9 3123.4 2500 2596.2 1549 3078.8 3272.3 TRUE FALSE FALSE 3306.193333 1294.180467 2035.079482 1853.5328 2892.993005 2452.316665 2696.336304 1725.331899 2951.890561 3252.836214 1.01640326 0.397862168 0.625632325 0.569820513 0.889375552 0.753901059 0.828918558 0.530408476 0.907482076 1 11.66748247 -7.29898662 24.62160887 1.007746038 0.671361682 0.513861607 0.140152194 242.214513 158831.6188 0.023284958 0.026627725 5.02E-08 7.29898662 -0.336384357 GYFDEEMNR ddPTM_HeLa_CUDC101_4h_R1 4 GYFDEEMNR 9 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9;A0A075B730;P58107 Q15149;Q15149-3;Q15149-4;Q15149-9;A0A075B730;P58107 PLEC;EPPK1 Plectin;Epiplakin 0 0 ;;; ;;; 163.99 0.00018202 144849800 16819.7 13880.8 11105 12763.2 14156.9 13403.7 12374.3 12338.4 11640.4 11387.4 FALSE FALSE TRUE 14848.12026 14308.451 11705.36989 13283.73846 13112.57369 13148.04675 12851.5809 13742.95358 11160.57779 11319.66724 1.31170996 1.264034595 1.034073674 1.173509626 1.158388618 1.161522373 1.13533204 1.214077525 0.985945748 1 13.46654393 -9.593510974 1.409685432 1.000771775 1.194854271 0.514321453 0.071989642 0.318170242 1.141464208 0.057515428 0.013571 2.55E-10 9.593510974 0.194082496 GYFEYIEENK ddPTM_HeLa_CUDC101_4h_R1 3 GYFEYIEENK 10 0 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;Q5RI18;A0A1W2PRI6 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ;; ;; 178.22 4.73E-07 31316100 4403.83 3762.94 3728.3 3620.72 3687.4 3865.16 3305.33 3704.68 4411 5048.9 FALSE FALSE TRUE 3887.619723 3878.871721 3929.863175 3768.388612 3415.387848 3791.438513 3432.817685 4126.405796 4229.176713 5018.868918 0.774600769 0.772857746 0.783017696 0.750844199 0.680509474 0.755436847 0.683982336 0.822178436 0.842655344 1 12.29314655 -9.191748159 0.432197551 1.066941447 0.732976987 0.473805553 0.062538964 0.48329218 0.124532339 0.072378514 0.011810385 6.43E-10 9.191748159 -0.333964461 GYFEYIEENKYSR ddPTM_HeLa_CUDC101_4h_R1 2 GYFEYIEENKYSR 13 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;Q5RI18;A0A1W2PRI6 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 184.98 7.17E-11 184276000 3220 3278.6 3508.9 3487.9 3787.3 3456.5 3594.8 3657.6 3927 3181.2 FALSE FALSE TRUE 2842.556481 3379.60978 3698.601748 3630.151638 3507.918424 3390.573021 3733.45264 4073.966399 3765.127398 3162.278081 0.898895166 1.068726309 1.169600412 1.14795459 1.109301059 1.072193189 1.180621231 1.288301122 1.190637667 1 11.62674852 -7.024437162 3.823184543 0.952611835 1.154242797 0.168048043 0.094791269 0.097640273 3.106473671 0.010927869 0.01393899 9.45E-08 7.024437162 0.201630962 QTCDVIT(ph)CEPMGSLIDTK ddPTM_HeLa_CUDC101_4h_R1 1 QTCDVITCEPMGSLIDTK 18 0 F8WAE6;Q86YW9-4;Q86YW9 F8WAE6 MED12L Mediator of RNA polymerase II transcription subunit 12-like protein 1 0 QT(0.045)CDVIT(0.954)CEPMGS(0.001)LIDTK 69.255 0.0029833 0 766.32 2921.9 1425.9 2554.8 1011 1186 2817.5 1656.4 1073.9 825.16 TRUE FALSE FALSE 676.4931313 3011.920276 1502.988467 2658.995787 936.4205442 1163.379026 2926.171919 1844.957881 1029.633387 820.2519116 0.824738256 3.671945451 1.83234985 3.241681914 1.141625555 1.418319189 3.5674064 2.249257642 1.255264843 1 9.679923241 -7.298792562 24.76616086 0.917237307 2.406505555 0.384173028 0.818964781 335.1305527 222199.7331 0.132402745 0.15141037 5.03E-08 7.298792562 1.489268248 DPQTLTDT(ph)T(ph)EEKRR ddPTM_HeLa_CUDC101_4h_R1 1 DPQTLTDTTEEKRR 14 2 Q8NFW9-5;Q8NFW9-4;Q8NFW9-3;Q8NFW9-6;Q8NFW9-2;Q8NFW9 Q8NFW9-5 MYRIP Rab effector MyRIP 2 0 DPQTLTDT(1)T(1)EEKRR 84.31 0.024969 36811000 3497.2 2744.5 2738.9 3011.6 2969.8 2833.7 2725.9 3115 3168.5 3100.3 TRUE FALSE FALSE 3087.263517 2829.054792 2886.973219 3134.426065 2750.723771 2779.651894 2831.038876 3469.599009 3037.893089 3081.859278 1.001753565 0.91797014 0.936763479 1.017056842 0.892553333 0.901939915 0.918613934 1.125813574 0.985733875 1 11.58958527 -7.29874958 22.25868925 1.000828098 0.953810044 0.058138845 0.065628878 260.3467943 155317.8888 0.01063665 0.012163878 5.03E-08 7.29874958 -0.047018053 GYGFVHFETQEAAER ddPTM_HeLa_CUDC101_4h_R1 4 GYGFVHFETQEAAER 15 0 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;H0YBN4;E5RGH3 P11940 PABPC1 Polyadenylate-binding protein 1;Polyadenylate-binding protein 0 0 ;;; ;;; 143.56 0.00033203 55984000 19132.9 16440.1 16467.9 17825.5 20294.8 18124.4 17317.7 16805.4 18815.9 17569.1 FALSE FALSE TRUE 16890.17047 16946.59999 17358.20449 18552.50094 18797.69304 17778.70727 17985.64949 18718.45881 18040.30064 17464.59821 0.96710902 0.970340101 0.993908035 1.062291884 1.076331262 1.017985473 1.029834713 1.071794414 1.032963966 1 14.09214583 -6.342679376 5.019376108 0.983029041 1.049857518 0.578001518 0.02448518 0.093144446 4.141299226 0.003283085 0.005075183 4.54E-07 6.342679376 0.066828477 LPLS(ph)PPLVEDSAFEPSR ddPTM_HeLa_CUDC101_4h_R1 4 LPLSPPLVEDSAFEPSR 17 0 O96007 O96007 MOCS2 Molybdopterin synthase catalytic subunit 1 0 LPLS(0.994)PPLVEDS(0.003)AFEPS(0.003)R;LPLS(1)PPLVEDSAFEPSR;LPLS(1)PPLVEDSAFEPSR;LPLS(1)PPLVEDSAFEPSR ;;; 148.41 0.00013542 40685400 6574.4 5202.77 4791.84 4725.46 4848.8 4950.74 4609.08 3252.79 5740.95 7040.4 TRUE FALSE FALSE 5803.758798 5363.061177 5050.901365 4918.184684 4491.113684 4856.312883 4786.85376 3623.074465 5504.305611 6998.523388 0.829283333 0.766313246 0.721709579 0.702746052 0.641723037 0.693905359 0.683980533 0.517691271 0.78649528 1 12.77283485 -7.298564993 0.162254107 1.171931605 0.425499052 0.585253819 0.077327954 0.676923419 0.099566825 0.196254845 0.207031771 5.03E-08 7.298564993 -0.746432553 GYISPYFINTSK ddPTM_HeLa_CUDC101_4h_R1 1 GYISPYFINTSK 12 0 P10809;E7ESH4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 187.42 6.72E-07 629020 529.06 513.36 228.72 380.96 479.54 417.12 241.29 402.75 326.13 246.94 FALSE FALSE TRUE 467.0443888 529.1760131 241.085295 396.4971954 444.1652896 409.164131 250.5966361 448.597432 312.6867834 245.4711899 1.902644416 2.155756092 0.982132751 1.615249413 1.809439592 1.666851948 1.020880032 1.827495244 1.273822739 1 7.9394099 -9.472776773 1.239013795 1.003380434 1.636731617 0.216554614 0.357211042 0.448890305 1.243236983 0.237394807 0.059673038 3.37E-10 9.472776773 0.633351183 GYIWNYGAIPQTWEDPGHNDK ddPTM_HeLa_CUDC101_4h_R1 2 GYIWNYGAIPQTWEDPGHNDK 21 0 Q15181;Q5SQT6 Q15181 PPA1 Inorganic pyrophosphatase 0 0 ; ; 103.41 0.00011066 64889000 5221.6 4961.7 4245.7 4821.9 5111.2 4593.6 4137.3 3921.7 4618.8 4709.6 FALSE FALSE TRUE 4609.531963 5114.564096 4475.235385 5018.557924 4734.156959 4505.984733 4296.877047 4368.130476 4428.411109 4681.58709 0.984608825 1.092485091 0.955922703 1.071977906 1.01122907 0.962490849 0.917824867 0.933044797 0.945920908 1 12.19278198 -5.023569019 3.328450865 1.004447299 0.926187357 0.376893354 0.043277001 0.175857538 4.006423105 0.005413966 0.016892125 9.47E-06 5.023569019 -0.078259942 GYLDK(ac)LEPSK ddPTM_HeLa_CUDC101_4h_R1 2 GYLDKLEPSK 10 1 P25705;P25705-2;P25705-3 P25705 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 1 ; GYLDK(1)LEPSK;GYLDK(1)LEPSK 152.54 0.00040251 2312080 3413 1699.1 1161.61 1297.36 2968.3 2412.7 2561.87 2285.14 1949.87 1695.75 FALSE TRUE FALSE 3012.933314 1751.447257 1224.41015 1350.271948 2749.334423 2366.681767 2660.682184 2545.271101 1869.495533 1685.663604 1.787387061 1.039025375 0.726366843 0.801032867 1.631010136 1.404005973 1.578418243 1.509951983 1.109056119 1 10.71910094 GYLPSHYER ddPTM_HeLa_CUDC101_4h_R1 1 GYLPSHYER 9 0 Q6P2Q9;I3L1T8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 94.692 0.021006 3491900 2367.5 1517 1226.8 1186.8 1170.4 1421.9 1201 1112.2 1068.1 562.11 FALSE FALSE TRUE 2089.985239 1563.736972 1293.124519 1235.202834 1084.061924 1394.779627 1247.322972 1238.808352 1024.072466 558.7665447 3.740354999 2.798551536 2.314248287 2.210588385 1.940098121 2.496175979 2.232279266 2.217041024 1.832737618 1 9.126101834 -6.516223214 23.56638111 2.377020014 2.224096848 0.006945656 0.662101208 1280.871763 4535407.445 0.162931699 0.235623651 3.05E-07 6.516223214 -0.152923166 GYNVNDEK ddPTM_HeLa_CUDC101_4h_R1 1 GYNVNDEK 8 0 P80723;P80723-2;U3KQP0 P80723 BASP1 Brain acid soluble protein 1 0 0 131.06 0.029889 8579900 2635.8 1792.4 2055.7 2320.1 2281.9 2030.3 2485.2 1717.3 2049.3 2191.4 FALSE FALSE TRUE 2326.83552 1847.621719 2166.83736 2414.723706 2113.568783 1991.57541 2581.054996 1912.79049 1964.826987 2178.365455 1.068156637 0.848168848 0.994707915 1.10850257 0.970254453 0.9142522 1.184858578 0.878085211 0.901973074 1 11.08903029 GYPHWPAR ddPTM_HeLa_CUDC101_4h_R1 1 GYPHWPAR 8 0 O75475;O75475-3;O75475-2;H3BPQ6;M0R0J3;Q9Y3E1;P51858;Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3 O75475;P51858;Q7Z4V5-2 PSIP1;HDGFRP3;HDGFRP2;HDGF PC4 and SFRS1-interacting protein;Hepatoma-derived growth factor-related protein 3;Hepatoma-derived growth factor;Hepatoma-derived growth factor-related protein 2 0 0 97.602 0.019453 7392200 17573 7252 3292.3 9271.6 5989 6666.4 6349 5305.7 2631.4 851.41 FALSE FALSE TRUE 15513.11958 7475.425524 3470.291697 9649.735923 5547.203402 6539.249527 6593.883057 5909.679442 2522.932578 846.3457755 18.32952917 8.832590344 4.100323765 11.40164718 6.554299156 7.72645143 7.791003687 6.982582785 2.980971432 1 9.725103388 -9.721258197 1.640842301 1.010542638 10.36869999 0.292828033 3.851408602 0.350100668 1.705333151 3.475349541 0.763744124 1.90E-10 9.721258197 9.358157356 GYQLLAMLLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 GYQLLAMLLKK 11 1 Q8IZQ1;Q8IZQ1-2 Q8IZQ1 WDFY3 WD repeat and FYVE domain-containing protein 3 0 1 GYQLLAMLLK(1)K 66.692 0.027395 0 403.47 0 53.296 0 138.28 174.53 199.02 142.8 124.52 0 FALSE TRUE FALSE 356.1758582 0 56.17734297 0 128.0793599 171.201131 206.6962681 159.0557748 119.3872329 0 0 VT(ph)NDISPESSPGVGR ddPTM_HeLa_CUDC101_4h_R1 1 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154;Q15154-4;Q15154-2;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 VT(0.82)NDIS(0.006)PES(0.155)S(0.019)PGVGR 151.11 0.00095997 63544000 2586.5 1837.6 1589.9 1870 2111.9 1825.3 1616.2 1883.1 2335.2 2431.1 TRUE FALSE FALSE 2283.314391 1894.214278 1675.854803 1946.266683 1956.109344 1790.485444 1678.537375 2097.464492 2238.942068 2416.639709 0.944830287 0.783821548 0.693464895 0.805360715 0.809433585 0.740898793 0.694574938 0.867926023 0.926469121 1 11.23878669 -7.298511899 3.175368565 0.976779343 0.76487212 0.7217721 0.052958838 0.080416504 1.60215065 0.008832416 0.010296956 5.03E-08 7.298511899 -0.211907223 RLS(ph)QSDEDVIR ddPTM_HeLa_CUDC101_4h_R1 2 RLSQSDEDVIR 11 1 H0Y917;A0A499FIZ0;Q9H7D7-3;Q9H7D7-4;Q9H7D7-2;Q9H7D7 H0Y917 WDR26 WD repeat-containing protein 26 1 0 RLS(0.985)QS(0.015)DEDVIR;RLS(0.998)QS(0.002)DEDVIR ; 128.73 0.0012554 94110000 4076.8 3988.1 3947.8 3916.5 4016.6 3572.3 3696.1 3414.3 4072.7 3683.2 TRUE FALSE FALSE 3598.923684 4110.968634 4161.230009 4076.231799 3720.30342 3504.164329 3838.659815 3802.970111 3904.821582 3661.292163 0.982965446 1.122819063 1.136546832 1.113331474 1.016117604 0.957084049 1.048444004 1.03869616 1.06651461 1 11.83813719 -7.298080698 24.8016188 0.991955898 1.060409304 0.073680671 0.056080023 551.3253947 373177.4593 0.009648388 0.011033499 5.03E-08 7.298080698 0.068453406 ITPLSLQTQGSS(ph)HETLNIVEEK ddPTM_HeLa_CUDC101_4h_R1 3 ITPLSLQTQGSSHETLNIVEEK 22 0 O43491;Q6R5J7;E9PMV8 O43491 EPB41L2 Band 4.1-like protein 2 1 0 ITPLS(0.002)LQT(0.094)QGS(0.125)S(0.761)HET(0.017)LNIVEEK;ITPLS(0.001)LQT(0.011)QGS(0.035)S(0.922)HET(0.03)LNIVEEK;ITPLSLQT(0.003)QGS(0.037)S(0.958)HET(0.002)LNIVEEK ;; 122.67 3.42E-07 96754400 10573.2 5779.5 4485 4163.5 11405.5 9585.7 8405 7294.8 9868.7 9187.8 TRUE FALSE FALSE 9333.825524 5957.559545 4727.472666 4333.305526 10564.13899 9402.868743 8729.183665 8125.210545 9461.908009 9133.150557 1.021972151 0.652300595 0.517616855 0.474459005 1.156680701 1.029531779 0.955769163 0.889639396 1.035996062 1 13.1568969 -7.297957565 23.90406533 1.010375778 0.813924979 0.178054075 0.204908973 498.2179333 326122.0178 0.038212392 0.043698445 5.04E-08 7.297957565 -0.196450799 GAYLQSLEPSS(ph)RR ddPTM_HeLa_CUDC101_4h_R1 1 GAYLQSLEPSSRR 13 1 M0R3D3;Q6ZW31 M0R3D3 SYDE1 Rho GTPase-activating protein SYDE1 1 0 GAYLQS(0.026)LEPS(0.064)S(0.91)RR 80.905 0.0026758 0 956.76 466.96 649.64 531.22 647.97 826.89 683.67 597.22 601.73 713.53 TRUE FALSE FALSE 844.6100432 481.3464841 684.7615035 552.8854477 600.170544 811.1184509 710.0393809 665.2051108 576.9264347 709.2858918 1.190789289 0.678635357 0.965423832 0.779495904 0.846161683 1.143570541 1.001062321 0.937851885 0.81339054 1 9.470223441 -7.297382894 24.99962204 1.090094937 0.91508905 0 0.153790644 591.257277 411232.9638 0.023517972 0.026894312 5.04E-08 7.297382894 -0.175005887 RDS(ph)LEEGELR ddPTM_HeLa_CUDC101_4h_R1 2 RDSLEEGELR 10 1 P21127;P21127-8;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-9;P21127-2;P21127-3;P21127-6;E7ESP2;J3KS35;A0A087WYI9;A0A087X1I0;E9PFJ2;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 RDS(1)LEEGELR;RDS(1)LEEGELR ; 105.03 0.0057565 53539000 4666.4 2994.3 3025 3192.6 3276.6 3573.3 2752.8 2653.5 3750.2 4334.5 TRUE FALSE FALSE 4119.411666 3086.550834 3188.54065 3322.808028 3034.891746 3505.145256 2858.976418 2955.563714 3595.615169 4308.718201 0.956064303 0.716350128 0.740020698 0.771182489 0.704360695 0.813500696 0.663532931 0.685949644 0.83449764 1 12.07304303 -7.297378668 4.783886374 0.980612561 0.729413188 0.673899606 0.061668157 0.044355827 2.512335338 0.007162978 0.00828871 5.04E-08 7.297378668 -0.251199373 GYSFTTTAER ddPTM_HeLa_CUDC101_4h_R1 4 GYSFTTTAER 10 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;; ;;; 156.35 0.0005285 321004800 5889.8 4416.07 4062.42 4828.86 4645.69 4604.6 4600.88 4259.21 4287.33 3313.5 FALSE FALSE TRUE 5199.406572 4552.123882 4282.046713 5025.801783 4302.986704 4516.774927 4778.337483 4744.06125 4110.604443 3293.791155 1.578547737 1.382031728 1.300035889 1.525841059 1.306393302 1.371299732 1.450710521 1.440304205 1.247985756 1 11.68553337 -9.437164701 1.120632351 0.995587217 1.428459037 0.487849392 0.110676186 0.195636939 0.432246428 0.067125532 0.016105488 3.65E-10 9.437164701 0.43287182 GYSYDLEVEQAYDLAR ddPTM_HeLa_CUDC101_4h_R1 2 GYSYDLEVEQAYDLAR 16 0 P28074-3;P28074 P28074-3 PSMB5 Proteasome subunit beta type-5 0 0 ; ; 139.3 0.001911 11647200 3293.36 2618.33 2394.14 2745.49 2701.05 2620.39 2786.09 3164.46 3063.84 2722.85 FALSE FALSE TRUE 2907.317333 2698.997644 2523.57445 2857.462949 2501.798923 2570.410427 2893.550425 3524.689335 2937.547218 2706.654367 1.074136901 0.997171148 0.932359329 1.05571771 0.924314147 0.94966334 1.069050581 1.302231041 1.085305628 1 11.40229496 -4.289611408 3.464842551 1.014525525 1.329431714 0.724865514 0.054920516 0.113284816 2.342780589 0.007890728 0.089343942 5.13E-05 4.289611408 0.314906189 S(ph)TAALEEDAQILK ddPTM_HeLa_CUDC101_4h_R1 4 STAALEEDAQILK 13 0 B1ALK7;A0A2R8YG42;Q14155-6;Q14155-1;Q14155-5;Q14155-2;Q14155-3;Q14155;E9PDQ5;Q15052-2;Q15052 B1ALK7 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6 1 0 S(0.815)T(0.185)AALEEDAQILK;S(0.947)T(0.053)AALEEDAQILK;S(0.991)T(0.009)AALEEDAQILK;S(0.991)T(0.009)AALEEDAQILK ;;; 223.7 9.67E-33 86877600 7068.7 7028.5 7431.8 6248.8 9120.3 7584.6 6683.72 5368.88 5613.6 6035 TRUE FALSE FALSE 6240.117701 7245.039754 7833.585588 6503.653074 8447.513639 7439.936392 6941.513319 5980.051597 5382.205032 5999.103552 1.040175027 1.207687064 1.305792694 1.084104153 1.408129326 1.240174691 1.157091765 0.9968242 0.897168216 1 12.55053122 -7.297023593 4.351732956 1.017646641 1.208019499 0.433169003 0.113195495 0.154465953 6.744419914 0.018049931 0.020934298 5.05E-08 7.297023593 0.190372858 SSPNPFVGS(ph)PPKGLSIQNGVK ddPTM_HeLa_CUDC101_4h_R1 2 SSPNPFVGSPPKGLSIQNGVK 21 1 P98082-3;P98082 P98082-3 DAB2 Disabled homolog 2 1 0 SSPNPFVGS(0.978)PPKGLS(0.022)IQNGVK;SSPNPFVGS(0.913)PPKGLS(0.087)IQNGVK ; 98.533 0.00015965 250060000 4135.5 4746.2 3899 4032.5 5359.6 3942.2 4030.7 3928.2 4697.6 3749.1 TRUE FALSE FALSE 3650.742959 4892.424796 4109.791734 4196.96278 4964.232986 3867.009103 4186.165449 4375.37041 4503.96294 3726.800186 0.979591815 1.312768206 1.102766858 1.126157178 1.332036261 1.037621796 1.123259966 1.174028708 1.208533518 1 11.86372176 -7.296777618 24.6059543 0.990362778 1.167221512 0.07278214 0.109895787 288.1911369 200666.233 0.013763157 0.015739133 5.05E-08 7.296777618 0.176858733 GVGSGPHPPDTQQPS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 4 GVGSGPHPPDTQQPSPSK 18 0 Q68CZ2;Q68CZ2-2;E9PCX8 Q68CZ2 TNS3 Tensin-3 1 0 GVGSGPHPPDT(0.006)QQPS(0.993)PS(0.001)K;GVGSGPHPPDT(0.34)QQPS(0.648)PS(0.012)K;GVGSGPHPPDT(0.202)QQPS(0.595)PS(0.202)K;GVGSGPHPPDT(0.003)QQPS(0.653)PS(0.344)K ;;; 190.37 1.28E-11 281023000 14774.6 9925.3 10285.5 9723.7 13485.1 12174.1 10931.4 12082.3 13120.3 12910.1 TRUE FALSE FALSE 13042.74378 10231.08673 10841.56524 10120.27452 12490.33104 11941.89933 11353.02776 13457.70019 12579.47568 12833.31015 1.016319533 0.797228977 0.844798818 0.788594244 0.973274307 0.930539291 0.884653112 1.048653857 0.980220655 1 13.64760572 -7.296695086 24.77989768 1.00770646 0.89327259 0.286066178 0.074449583 443.8717242 311979.4643 0.012576645 0.014382224 5.05E-08 7.296695086 -0.11443387 KVDEGAGDSAAVASGGAQTLALAGS(ph)PAPSGHPK ddPTM_HeLa_CUDC101_4h_R1 2 KVDEGAGDSAAVASGGAQTLALAGSPAPSGHPK 33 1 Q9NZT2-2;Q9NZT2;A0A0A0MRN5 Q9NZT2-2 OGFR Opioid growth factor receptor 1 0 KVDEGAGDSAAVAS(0.003)GGAQT(0.093)LALAGS(0.896)PAPS(0.009)GHPK;KVDEGAGDSAAVASGGAQT(0.177)LALAGS(0.819)PAPS(0.005)GHPK ; 113.46 6.25E-15 104357000 14222.4 7627.8 7864.6 7121.8 14802.2 11696.4 10679.6 8090.9 12737.9 11911.7 TRUE FALSE FALSE 12555.27183 7862.803477 8289.784065 7412.257787 13710.2712 11473.31066 11091.51575 9011.935351 12212.83837 11840.84868 1.060335469 0.664040534 0.700100499 0.625990416 1.157879099 0.968960162 0.936716282 0.761088634 1.031415796 1 13.53148487 -7.296494991 24.8247317 1.028491765 0.839768165 0.264760317 0.152117426 602.903504 426946.3619 0.027421644 0.031358578 5.05E-08 7.296494991 -0.1887236 PCIQAQYGTPAPS(ph)PGPR ddPTM_HeLa_CUDC101_4h_R1 4 PCIQAQYGTPAPSPGPR 17 0 F8VVX9;P22736-3;P22736 F8VVX9 NR4A1 Nuclear receptor subfamily 4 group A member 1 1 0 PCIQAQYGT(0.024)PAPS(0.976)PGPR;PCIQAQYGT(0.001)PAPS(0.999)PGPR;PCIQAQYGT(0.004)PAPS(0.996)PGPR;PCIQAQYGTPAPS(1)PGPR ;;; 226.67 5.01E-33 54610000 5372.72 6009.65 7446.6 9352.7 9217.4 5517.78 7319.6 4857.26 2995.87 3306.24 TRUE FALSE FALSE 4742.937906 6194.800193 7849.185721 9734.143532 8537.450766 5412.53754 7601.919424 5410.190845 2872.378971 3286.574337 1.443125096 1.884880595 2.388257473 2.96179016 2.597674627 1.646862959 2.313022206 1.646148935 0.873973529 1 11.6823689 -7.296348625 1.603184896 1.163486794 2.276760796 0.635428825 0.392114013 0.181911705 0.889565263 0.078046775 0.091342165 5.05E-08 7.296348625 1.113274002 RLS(ph)YNTASNK ddPTM_HeLa_CUDC101_4h_R1 1 RLSYNTASNK 10 1 P49207 P49207 RPL34 60S ribosomal protein L34 1 0 RLS(0.967)Y(0.004)NT(0.028)AS(0.001)NK 74.537 0.029645 11375000 2340.6 3965.7 2673 3168.3 3120.2 3869.2 2214.8 2663.7 2780.9 3150.6 TRUE FALSE FALSE 2066.238416 4087.878516 2817.510465 3297.516969 2890.029062 3795.401457 2300.225578 2966.924841 2666.270125 3131.860091 0.659747995 1.30525579 0.899628458 1.052894086 0.922783579 1.211868138 0.734459877 0.947336329 0.851337559 1 11.61280405 -7.29633636 24.9997598 0.839325469 1.001704559 0.178699453 0.16975421 889.618968 637309.7897 0.031879539 0.036456386 5.05E-08 7.29633636 0.16237909 LDLTENLTGS(ph)KR ddPTM_HeLa_CUDC101_4h_R1 1 LDLTENLTGSKR 12 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLTENLT(0.002)GS(0.998)KR 134.06 0.0029369 17788000 2414.3 2106.9 2187.5 1949.6 2145.8 2125.2 1409.4 436.55 1768.9 2084.9 TRUE FALSE FALSE 2131.299414 2171.811092 2305.762867 2029.113115 1987.508609 2084.665351 1463.76103 486.2450874 1695.985193 2072.498922 1.028371784 1.047919045 1.112552022 0.979065945 0.958991384 1.005870415 0.706278307 0.234617776 0.818328625 1 11.01715564 -4.306978514 1.688054784 1.019575207 2.30E-18 0.904593284 0.075675103 0.096242923 0.282656528 0.006002296 0.153704079 4.93E-05 4.306978514 -1.019575207 down VT(ph)PTKESYTEEIVSEAESHVSGISR ddPTM_HeLa_CUDC101_4h_R1 1 VTPTKESYTEEIVSEAESHVSGISR 25 1 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 VT(0.75)PT(0.168)KES(0.044)Y(0.037)T(0.001)EEIVSEAESHVSGISR 122.47 3.88E-10 3779100 2055 1211.2 1142.7 741.17 2558.6 2403.7 1382.7 713.63 2461.3 1798.6 TRUE FALSE FALSE 1814.116015 1248.515636 1204.477818 771.3981162 2369.857175 2357.853427 1436.031202 794.8667546 2359.844172 1787.901847 1.014661973 0.698313299 0.673682294 0.431454399 1.32549624 1.318782365 0.803193533 0.444580756 1.319895819 1 10.80405182 -7.296247529 22.77861857 1.006923764 0.832273734 0.139374633 0.305437838 463.0968214 303051.2995 0.051707825 0.059132852 5.06E-08 7.296247529 -0.17465003 S(ph)PLPGPSEEK ddPTM_HeLa_CUDC101_4h_R1 1 SPLPGPSEEK 10 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 S(1)PLPGPSEEK 103.43 0.0017692 0 4195 2788.1 3139.6 3517.7 2749.3 2288.8 2332.3 1208.5 3389.7 3689.9 TRUE FALSE FALSE 3703.268459 2873.998056 3309.336273 3661.167011 2546.489616 2245.144953 2422.257592 1346.070755 3249.975131 3667.952311 1.009628301 0.783542918 0.902229907 0.998150112 0.694253742 0.61209764 0.660384156 0.366981531 0.886046179 1 11.84075917 -4.30668498 0.418410068 1.010367979 5.78E-19 0.775550614 0.094047079 1.356241541 0.164353975 0.021984548 0.677237952 4.94E-05 4.30668498 -1.010367979 down AIPELDAYEAEGLALDDEDVEELTASQR ddPTM_HeLa_CUDC101_4h_R1 1 AIPELDAYEAEGLALDDEDVEELTASQR 28 0 P49736;F8WDM3;C9J013;C9JZ21;H7C4N9 P49736 MCM2 DNA replication licensing factor MCM2 0 0 155.47 2.83E-16 12832000 1379.6 1162.7 923.16 1252.7 1428.9 1185.4 908.99 390.49 1446.9 1197.9 FALSE FALSE TRUE 1217.885379 1198.521409 973.068822 1303.790521 1323.492894 1162.79047 944.0500488 434.9418032 1387.25817 1190.774838 1.022767144 1.006505488 0.817172812 1.094909365 1.111455207 0.976499027 0.792803156 0.365259484 1.165004605 1 10.21768493 -4.304748431 1.956899515 1.009030976 0.207456636 0.835670394 0.089465981 0.167257776 0.719171298 0.010487986 0.232814015 4.96E-05 4.304748431 -0.80157434 down ELGPLPDDDDMAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 5 ELGPLPDDDDMASPK 15 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5;Q86U86-6 Q86U86-8 PBRM1 Protein polybromo-1 1 0 ELGPLPDDDDMAS(1)PK;ELGPLPDDDDMAS(1)PK;ELGPLPDDDDMAS(1)PK;ELGPLPDDDDMAS(1)PK;ELGPLPDDDDMAS(1)PK ;;;; 242.9 1.46E-44 84268900 21094.2 18625.1 18853.2 17648.4 17022.9 17189.6 13219.3 4625.24 21078.5 23883 TRUE FALSE FALSE 18621.56985 19198.91725 19872.46102 18368.17803 15767.15458 16861.73702 13729.17283 5151.758626 20209.63531 23740.94285 0.78436522 0.808683858 0.837054414 0.77369202 0.664133463 0.710238727 0.578290968 0.216998906 0.851256643 1 14.53508961 -4.30281192 0.390061514 0.918122435 4.75E-42 0.820113927 0.084875502 1.871465158 0.198503287 0.027606917 0.797354507 4.98E-05 4.30281192 -0.918122435 down TQT(ph)PPVEENVTQK ddPTM_HeLa_CUDC101_4h_R1 2 TQTPPVEENVTQK 13 0 Q6P1Q9-2;Q6P1Q9 Q6P1Q9-2 METTL2B Methyltransferase-like protein 2B 1 0 T(0.153)QT(0.847)PPVEENVTQK;T(0.007)QT(0.993)PPVEENVTQK ; 188 1.77E-10 42524000 5450.2 4932 4866.4 4989.8 4893.6 5083.3 4706.4 4485.6 5005.9 4853.6 TRUE FALSE FALSE 4811.335818 5083.949074 5129.492304 5193.305612 4532.608877 4986.344522 4887.927425 4996.222573 4799.554683 4824.730571 0.99722373 1.053727042 1.063166581 1.076392875 0.939453263 1.03349699 1.013098525 1.035544368 0.994781908 1 12.23623266 -7.295552827 23.73183018 0.998688978 1.029624893 0.158186148 0.035165908 488.1782049 339611.2729 0.006012081 0.006875304 5.06E-08 7.295552827 0.030935915 T(ph)PKEEAQSLEDLAGFK ddPTM_HeLa_CUDC101_4h_R1 1 TPKEEAQSLEDLAGFK 16 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 T(1)PKEEAQSLEDLAGFK 90.853 0.0097435 5406500 1055 995.95 1067.7 893.72 997.07 1201.4 837.33 249.17 1083.1 1245.1 TRUE FALSE FALSE 931.3344993 1026.634039 1125.423092 930.1697646 923.5181325 1178.485297 869.6260986 277.5345056 1038.45416 1237.69409 0.752475516 0.829473169 0.909290188 0.751534464 0.746160251 0.952162014 0.702617962 0.224235138 0.839023284 1 10.27343906 -4.299872882 2.777148368 0.863254195 0.133767523 0.830492877 0.084114089 0.139811285 1.538110533 0.015173222 0.221327222 5.01E-05 4.299872882 -0.729486672 down GSGDISSDSIDHS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 2 GSGDISSDSIDHSPAK 16 0 Q5JSS2;H0Y306;Q9H5I1-3;Q9H5I1-2;Q9H5I1 Q5JSS2 SUV39H2 Histone-lysine N-methyltransferase SUV39H2 1 0 GSGDISSDS(0.001)IDHS(0.999)PAK;GSGDISSDS(0.001)IDHS(0.999)PAK ; 127.97 0.00031918 33349000 9331.5 4616 4471.2 3935.8 9393.1 7490 7116.4 6013.7 7745.9 7688 TRUE FALSE FALSE 8237.675716 4758.213489 4712.926597 4096.318936 8700.189727 7347.140729 7390.881932 6698.2753 7426.610723 7642.271434 1.077909335 0.622617703 0.616691861 0.53600804 1.138429824 0.961381808 0.967105395 0.876477021 0.971780548 1 12.89978578 -7.294533853 24.82957628 1.036790534 0.822144263 0.207285183 0.177357138 664.6351113 498649.7856 0.032475582 0.037138482 5.08E-08 7.294533853 -0.214646271 APSRTSQDRDPS(ph)SLS(ph)TSETT(ph)VTRK ddPTM_HeLa_CUDC101_4h_R1 1 APSRTSQDRDPSSLSTSETTVTRK 24 3 A0A1W2PPP7 A0A1W2PPP7 3 0 APS(0.203)RT(0.223)S(0.234)QDRDPS(0.306)S(0.079)LS(0.796)T(0.131)S(0.044)ET(0.085)T(0.472)VT(0.427)RK 43.068 0.033937 9292600 1494.2 969.77 1204.6 928.8 1360.5 1125.3 1070.3 1097.3 1035.9 1318.4 TRUE FALSE FALSE 1319.052141 999.6474642 1269.72432 966.6804786 1260.138625 1103.836777 1111.58183 1222.212197 993.1997635 1310.558098 1.006481241 0.762764707 0.968842451 0.737609786 0.961528243 0.842264665 0.848174401 0.932589099 0.757844894 1 10.3559656 -7.294456418 24.43602454 1.003060605 0.86614383 0 0.105977989 285.5546129 211339.2338 0.010747481 0.012290687 5.08E-08 7.294456418 -0.136916775 LALSPLS(ph)LGK ddPTM_HeLa_CUDC101_4h_R1 2 LALSPLSLGK 10 0 P49454 P49454 CENPF Centromere protein F 1 0 LALS(0.325)PLS(0.675)LGK;LALS(0.356)PLS(0.644)LGK ; 141.89 0.0010782 236460000 17978.8 15912.8 14388.4 14130.3 15933.4 13014.4 11621.2 3381.9 15843.8 16911.1 TRUE FALSE FALSE 15871.35232 16403.05451 15166.28043 14706.59471 14758.02483 12766.172 12069.43358 3766.881826 15190.71186 16810.51203 0.944132594 0.975761743 0.902190273 0.874845138 0.87790454 0.759416012 0.71796942 0.224078947 0.903643615 1 14.03707605 -4.299099674 0.960805574 0.960733487 1.88E-33 0.915482669 0.062443318 0.353803036 0.256592389 0.009264182 0.346953796 5.02E-05 4.299099674 -0.960733487 down KSDGACDSPS(ph)SDKENSSQIAQDHQK ddPTM_HeLa_CUDC101_4h_R1 1 KSDGACDSPSSDKENSSQIAQDHQK 25 2 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 KS(0.003)DGACDS(0.029)PS(0.323)S(0.247)DKENS(0.311)S(0.087)QIAQDHQK 49.662 0.01555 8015700 296.42 416.24 320.23 415.94 517 306.69 327.03 139.71 436.02 277.51 TRUE FALSE FALSE 261.6740969 429.063861 337.5426024 432.903831 478.86194 300.8403992 339.6436566 155.6140217 418.047071 275.8593582 0.948577923 1.55537178 1.223603958 1.569291808 1.73589159 1.090557164 1.231220354 0.564106372 1.515435524 1 8.107789113 -7.293699676 23.98365479 0.975717306 1.298488258 0 0.348705051 474.6041232 352839.225 0.051534072 0.0589345 5.09E-08 7.293699676 0.322770952 ASSPS(ph)PLTIGTPES(ph)QR ddPTM_HeLa_CUDC101_4h_R1 1 ASSPSPLTIGTPESQR 16 0 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 2 0 AS(0.018)S(0.137)PS(0.823)PLT(0.146)IGT(0.339)PES(0.536)QR 114.58 0.010481 6728700 1828.1 1090.3 1142 1265.7 1511.1 1379.8 1426.9 1323.5 1495 1517.7 TRUE FALSE FALSE 1613.812889 1123.890851 1203.739974 1317.320717 1399.629164 1353.482614 1481.936011 1474.16189 1433.375467 1508.672653 1.069690556 0.744953419 0.797880158 0.873165371 0.927722234 0.897134717 0.982278036 0.977125082 0.950090442 1 10.55906409 -7.293645993 24.99897747 1.032909436 0.887652184 0.335465609 0.075220802 447.6870843 347496.4803 0.013312632 0.015224197 5.09E-08 7.293645993 -0.145257252 LSVAS(ph)TPISQR ddPTM_HeLa_CUDC101_4h_R1 2 LSVASTPISQR 11 0 Q9BXS6-4;Q9BXS6-6;Q9BXS6-3;Q9BXS6-5;Q9BXS6-2;Q9BXS6;Q9BXS6-7;H0YMD2 Q9BXS6-4 NUSAP1 Nucleolar and spindle-associated protein 1 1 0 LS(0.02)VAS(0.482)T(0.482)PIS(0.016)QR;LS(0.154)VAS(0.416)T(0.416)PIS(0.015)QR ; 130.69 0.0019314 34812000 8687.7 7500 7653.1 7227.2 7172.8 6338.9 5396.1 2135.73 6871.2 9045.5 TRUE FALSE FALSE 7669.340976 7731.06611 8066.849735 7521.956455 6643.676834 6217.996044 5604.229385 2378.85287 6587.966228 8991.696964 0.852935881 0.859800563 0.897144306 0.836544702 0.738867965 0.691526424 0.623267155 0.264561059 0.732672181 1 13.1343777 -4.2969588 0.554150312 0.930739364 8.87E-34 0.802276186 0.085514791 0.844838533 0.178343803 0.013323543 0.500972186 5.05E-05 4.2969588 -0.930739364 down LESGGGGEGGEGT(ph)EEEDGAER ddPTM_HeLa_CUDC101_4h_R1 4 LESGGGGEGGEGTEEEDGAER 21 0 Q96LA8 Q96LA8 PRMT6 Protein arginine N-methyltransferase 6 1 0 LESGGGGEGGEGT(1)EEEDGAER;LESGGGGEGGEGT(1)EEEDGAER;LESGGGGEGGEGT(1)EEEDGAER;LESGGGGEGGEGT(1)EEEDGAER ;;; 300.86 4.55E-125 46347200 3677.45 2501.22 2727.87 2822.74 2814.42 3012.62 3195.85 2417.09 3058.35 3151.93 TRUE FALSE FALSE 3246.384886 2578.279624 2875.346904 2937.863538 2606.805844 2955.159293 3319.115005 2692.241755 2932.283519 3133.18218 1.036130266 0.822894896 0.917708176 0.937661256 0.831999448 0.943181444 1.059343126 0.859267544 0.935880313 1 11.61341294 -7.293430578 24.98761423 1.017061521 0.91561772 0.190534639 0.069222126 523.2634099 408708.1329 0.010869268 0.012429944 5.09E-08 7.293430578 -0.1014438 VPKPEPIPEPKEPS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 3 VPKPEPIPEPKEPSPEK 17 2 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK;VPKPEPIPEPKEPS(1)PEK ;; 135.36 0.00019229 2413300000 7051.7 7096.6 7380 6896.3 6566 5981.37 6331.6 6590.7 6593.9 6453.6 TRUE FALSE FALSE 6225.110416 7315.237834 7778.985123 7177.560922 6081.639261 5867.285333 6575.811933 7340.958647 6322.096651 6415.2137 0.970366804 1.140295269 1.212583943 1.118834268 0.948002599 0.914589226 1.025033965 1.144304616 0.985484965 1 12.64728161 -7.29337907 24.77752896 0.986006541 1.066537539 0.172153373 0.086518487 893.0696284 692805.3964 0.016334294 0.018679883 5.09E-08 7.29337907 0.080530998 TGS(ph)GGVASSSESNR ddPTM_HeLa_CUDC101_4h_R1 1 TGSGGVASSSESNR 14 0 K7EMT0;Q15428 K7EMT0 SF3A2 Splicing factor 3A subunit 2 1 0 T(0.002)GS(0.998)GGVASSSESNR 97.203 0.0092238 1420500 336.72 495.68 402.48 549.91 367.15 343.54 413.52 288.34 355.63 328.8 TRUE FALSE FALSE 297.250192 510.9513133 424.2392862 572.3377067 340.066076 336.9875469 429.4696049 321.1634601 340.9707809 326.844283 0.909455075 1.563286678 1.297985947 1.751102089 1.040452881 1.031033934 1.313988426 0.982619176 1.043220881 1 8.352459652 -7.292844799 24.54167472 0.957242647 1.283691221 0.261513009 0.228673993 471.8695715 368739.9021 0.038640798 0.044189783 5.10E-08 7.292844799 0.326448574 RRDEQLS(ph)PEEEEK ddPTM_HeLa_CUDC101_4h_R1 2 RRDEQLSPEEEEK 13 2 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 RRDEQLS(1)PEEEEK;RRDEQLS(1)PEEEEK ; 78.228 0.029112 28457000 4639.7 3726.8 3612.1 3720.3 3916.8 3541 3618.3 3465.7 4472.6 4331.7 TRUE FALSE FALSE 4095.841399 3841.618291 3807.381052 3872.029915 3627.865467 3473.461325 3757.859043 3860.221279 4288.237535 4305.934856 0.951208399 0.892168233 0.884217058 0.899230955 0.842526789 0.806668341 0.872716186 0.896488546 0.995890017 1 12.07211078 -7.292502333 0.681742252 0.991413974 0.854456902 0.813907145 0.0254224 0.186993593 0.185590311 0.007585471 0.00883378 5.10E-08 7.292502333 -0.136957072 AADRLPNLSS(ph)PSAEGPPGPPSGPAPR ddPTM_HeLa_CUDC101_4h_R1 1 AADRLPNLSSPSAEGPPGPPSGPAPR 26 1 O60784-3;O60784-4;O60784;O60784-2 O60784-3 TOM1 Target of Myb protein 1 1 0 AADRLPNLS(0.094)S(0.845)PS(0.06)AEGPPGPPSGPAPR 132.7 2.33E-11 74073000 554.2 614.29 581.8 607.24 634.6 524.47 566 360.63 545.02 519.19 TRUE FALSE FALSE 489.2375161 633.2155468 613.2538678 632.0058719 587.7868223 514.4666086 587.8308096 401.6826615 522.5540449 516.1018348 0.94794764 1.226919775 1.188241983 1.224575906 1.138896982 0.996831582 1.138982212 0.778301169 1.012501816 1 9.011511949 -7.292472525 24.87044247 0.975419712 1.106376079 0.138335786 0.12636927 761.7269159 610457.8954 0.021134963 0.024170146 5.10E-08 7.292472525 0.130956367 FSNS(ph)MESLSSR ddPTM_HeLa_CUDC101_4h_R1 2 FSNSMESLSSR 11 0 Q9H792 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 FS(0.002)NS(0.969)MES(0.008)LS(0.019)S(0.002)R;FS(0.003)NS(0.895)MES(0.102)LSSR ; 147.39 0.00089441 28178000 2204.96 2091.2 2157.79 1828.95 2261.79 2156.24 2087.8 1494.25 2154.04 2005.7 TRUE FALSE FALSE 1946.497931 2155.627393 2274.446654 1903.542486 2094.942258 2115.113315 2168.327145 1664.34938 2065.249559 1993.770007 0.976290106 1.081181573 1.140776843 0.954745271 1.050744193 1.060861236 1.087551291 0.834775011 1.035851453 1 10.96128328 -7.292348713 24.66043643 0.988803659 1.0356379 0.007687528 0.081285179 1175.373615 937747.2073 0.012878606 0.014728011 5.10E-08 7.292348713 0.046834241 HAEELAAQK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 HAEELAAQKR 10 1 O60563 O60563 CCNT1 Cyclin-T1 0 1 ; HAEELAAQK(1)R;HAEELAAQK(1)R 136.52 0.0009795 4991300 2949.6 3599.4 3118.3 3240.2 2551 3076.5 1983.44 1674.49 3296.5 3592.4 FALSE TRUE FALSE 2603.852359 3710.293248 3286.88473 3372.349361 2362.817812 3017.820888 2059.941945 1865.107173 3160.616875 3571.032245 0.729159576 1.038997408 0.920429866 0.944362618 0.661662413 0.845083629 0.576847758 0.522287967 0.885070942 1 11.80212545 -4.591986905 0.859549532 0.888914758 0.391957598 0.6231361 0.10477161 0.942525608 0.694160679 0.020343091 0.39436562 2.56E-05 4.591986905 -0.49695716 HALIIYDDLSK ddPTM_HeLa_CUDC101_4h_R1 2 HALIIYDDLSK 11 0 P25705;P25705-2;P25705-3 P25705 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 0 ; ; 104.79 0.0084789 38844000 15923.2 12032.8 10541.2 11917.6 13074.2 13885.7 11341.1 10843.1 11570.5 12585.6 FALSE FALSE TRUE 14056.70663 12403.51631 11111.08916 12403.65124 12109.74231 13620.85341 11778.53003 12077.43467 11093.55909 12510.74029 1.123571132 0.991429445 0.888124036 0.991440231 0.967947702 1.088732808 0.941473466 0.96536531 0.886722834 1 13.61087954 -7.025605014 23.74152877 1.058308165 0.974933271 0 0.076889 391.1661886 362697.2994 0.010660572 0.013089221 9.43E-08 7.025605014 -0.083374894 HALK(ac)WIRPQTSE ddPTM_HeLa_CUDC101_4h_R1 2 HALKWIRPQTSE 12 2 H0YJA2;Q6PJT7-5;Q6PJT7-2;Q6PJT7;Q6PJT7-9;G3V5I6;G3V256;Q6PJT7-10;Q6PJT7-4;Q6PJT7-3;Q6PJT7-11;G3V411;H0YJ51;Q6PJT7-8;Q6PJT7-6 H0YJA2 ZC3H14 Zinc finger CCCH domain-containing protein 14 0 1 ; HALK(1)WIRPQTSE;HALK(1)WIRPQTSE 118.77 0.0030013 14690100 4493.1 5045.7 4861.9 6176.1 7422.8 6240.2 5844.8 5763.6 4232.2 3401.2 FALSE TRUE FALSE 3966.425629 5201.152036 5124.74902 6427.988053 6875.234832 6121.178582 6070.235894 6419.704927 4057.746925 3380.969511 1.1731622 1.538361118 1.515763157 1.90122627 2.033509859 1.810480267 1.795412787 1.898776344 1.200172587 1 11.72322129 -6.953773578 0.983553141 1.051366137 1.894112754 0.904814356 0.105151088 0.083867979 0.160353753 0.020448184 0.028626718 1.11E-07 6.953773578 0.842746618 HALLEADVAAHQDR ddPTM_HeLa_CUDC101_4h_R1 2 HALLEADVAAHQDR 14 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 106.58 0.0033324 18733200 2992 2787.6 2389.2 2436.3 2379.6 2536.8 2435.5 2048.5 2830.6 2992.4 FALSE FALSE TRUE 2641.282296 2873.482652 2518.367379 2535.662845 2204.061649 2488.414767 2529.438051 2281.69296 2713.92147 2974.601072 0.887945049 0.966006057 0.84662357 0.852437952 0.740960416 0.836554115 0.850345303 0.767058474 0.912364853 1 11.53848048 -7.655755699 0.168517904 1.084666436 0.720169089 0.549281382 0.050989602 1.604957853 0.231031202 0.239149077 0.198608962 2.21E-08 7.655755699 -0.364497346 GS(ph)FGAMDDPFK ddPTM_HeLa_CUDC101_4h_R1 2 GSFGAMDDPFK 11 0 Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R3I1 Q9UBC2-3 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 GS(1)FGAMDDPFK;GS(1)FGAMDDPFK ; 126.34 0.0028702 10678600 6105.1 4262.3 4462.7 4739.7 4686 4829.5 5066.2 4717.8 4889.5 5398.3 TRUE FALSE FALSE 5389.469433 4393.616411 4703.967061 4933.005453 4340.323116 4737.385334 5261.605031 5254.855282 4687.95274 5366.190672 1.004338042 0.818758907 0.876593351 0.919275097 0.808827599 0.88282091 0.980510264 0.979252435 0.873609051 1 12.3896826 -7.292079272 23.9552747 1.002048537 0.894851651 0.065449517 0.067254654 269.7957721 210934.4508 0.00949864 0.010860858 5.10E-08 7.292079272 -0.107196885 KSDASDMNSDT(ph)SPSCR ddPTM_HeLa_CUDC101_4h_R1 1 KSDASDMNSDTSPSCR 16 1 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 KSDASDMNS(0.043)DT(0.477)S(0.477)PS(0.003)CR 124.73 0.0051003 16377000 2359.6 2870.3 2574.1 2281.8 2781 2241.6 2368.9 2921.3 2642.3 2089.8 TRUE FALSE FALSE 2083.011265 2958.730541 2713.263632 2374.861667 2575.851171 2198.845215 2460.269267 3253.848984 2533.383276 2077.369777 1.002715688 1.424267636 1.306105279 1.143206036 1.23995795 1.058475597 1.184319371 1.566331146 1.219514842 1 11.02054233 -7.292066391 22.24464897 1.001282302 1.257694328 0.223391095 0.15214147 116.8207542 84847.41901 0.022688429 0.025948515 5.10E-08 7.292066391 0.256412026 LISWYDNEFGYS(ph)NR ddPTM_HeLa_CUDC101_4h_R1 2 LISWYDNEFGYSNR 14 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 LISWYDNEFGY(0.003)S(0.997)NR;LISWYDNEFGY(0.002)S(0.998)NR ; 109.55 0.0036835 23538000 1864.29 1972.59 1811.14 1856.12 2030.02 1786.8 1871.86 1373.6 1654.42 1808.09 TRUE FALSE FALSE 1645.760752 2033.36316 1909.055707 1931.820596 1880.269469 1752.719767 1944.058267 1529.965072 1586.224107 1797.3354 0.915667021 1.131320932 1.062158853 1.074824763 1.046142789 0.97517679 1.081633549 0.851240715 0.882542072 1 10.81164394 -7.29122063 24.99289705 0.960176095 1.034901256 0.231011322 0.077997536 869.9430023 730067.609 0.012567193 0.014371954 5.11E-08 7.29122063 0.074725161 T(ph)LSDESIYNSQR ddPTM_HeLa_CUDC101_4h_R1 4 TLSDESIYNSQR 12 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 T(0.994)LS(0.006)DESIYNSQR;T(0.78)LS(0.22)DES(0.001)IYNSQR;T(1)LSDESIYNSQR;T(0.5)LS(0.5)DESIYNSQR ;;; 255.24 7.98E-56 531349000 5163.53 5325.41 4508.32 4757.53 5541.14 5207.57 4654.78 4973.67 4546.18 4843.9 TRUE FALSE FALSE 4558.268841 5489.47957 4752.053416 4951.562637 5132.381142 5108.244279 4834.316424 5539.852489 4358.784536 4815.088267 0.94666361 1.140057931 0.98690889 1.028343067 1.065895547 1.060882791 1.003993313 1.150519405 0.905234607 1 12.23334653 -7.290831386 24.98933017 0.97481337 1.055993341 0.441142893 0.055347251 535.9405427 455659.5252 0.008339502 0.009537358 5.12E-08 7.290831386 0.081179972 AGHDDVPPLS(ph)PLLPPMQNNQIQR ddPTM_HeLa_CUDC101_4h_R1 1 AGHDDVPPLSPLLPPMQNNQIQR 23 0 O14544 O14544 SOCS6 Suppressor of cytokine signaling 6 1 0 AGHDDVPPLS(1)PLLPPMQNNQIQR 62.582 0.0051317 6101500 1236.1 1382.5 1191.3 1309.7 1351.4 1091.9 1200.1 1279.2 1125.8 1181.6 TRUE FALSE FALSE 1091.206232 1425.093186 1255.705281 1363.115227 1251.709914 1071.073827 1246.388259 1424.818957 1079.394047 1174.571791 0.929024722 1.213287428 1.069074953 1.160520998 1.065673401 0.911884514 1.061142681 1.213053956 0.918968135 1 10.19791918 -7.290807165 24.99191438 0.966483893 1.09046965 0.383332589 0.085806702 626.0597267 532773.6466 0.01485586 0.016989862 5.12E-08 7.290807165 0.123985757 Y(ph)EVS(ph)VY(ph)ALK ddPTM_HeLa_CUDC101_4h_R1 1 YEVSVYALK 9 0 H0Y7Z1;P02751-12;P02751-10;P02751-6;P02751-5;P02751-9;P02751-14;P02751-13;P02751-8;P02751-17;P02751-3;P02751-11;P02751-1;P02751-7;P02751;P02751-4 H0Y7Z1 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 3 0 Y(1)EVS(1)VY(1)ALK 70.056 0.0023396 0 880.92 614.19 572.1 593.8 783.47 877.97 625.98 655.22 574.41 782.99 TRUE FALSE FALSE 777.659893 633.1124659 603.0294565 618.0177306 725.674979 861.224185 650.1242583 729.8075963 550.7325767 778.3327407 0.999135527 0.813421346 0.77477077 0.794027668 0.932345437 1.106498725 0.835278056 0.937655013 0.707579866 1 9.604243235 -7.290683494 22.35740278 0.999591818 0.885573538 0 0.129372664 204.5139632 156352.1212 0.016294724 0.018636826 5.12E-08 7.290683494 -0.11401828 QLS(ph)MTLR ddPTM_HeLa_CUDC101_4h_R1 1 QLSMTLR 7 0 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;E5RIY8;E5RIU4;E5RJQ8;E5RGV7 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 0 QLS(0.922)MT(0.078)LR 86.882 0.036984 20867000 2667.4 1852.3 1839.1 1847 2162.9 2227.1 2176.9 2288.5 2046.8 2260.5 TRUE FALSE FALSE 2354.731416 1909.367167 1938.527309 1922.328643 2003.347176 2184.621778 2260.863762 2549.01359 1962.430038 2247.054445 1.047919164 0.849720029 0.86269708 0.855488236 0.891543674 0.972215775 1.006145519 1.134379986 0.873334441 1 11.13381937 -7.290353357 24.94196725 1.022628496 0.934794646 0 0.09505887 882.303977 761096.4719 0.015069563 0.017234148 5.12E-08 7.290353357 -0.087833851 SGDAAIVDMVPGKPMCVESFS(ph)DYPPLGR ddPTM_HeLa_CUDC101_4h_R1 1 SGDAAIVDMVPGKPMCVESFSDYPPLGR 28 1 Q5VTE0;P68104;A0A087WVQ9 Q5VTE0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 1 0 SGDAAIVDMVPGKPMCVES(0.415)FS(0.482)DY(0.103)PPLGR 55.033 0.0038165 17670000 1370.7 1651.8 1427.6 1482.5 1597.4 1574.4 1301.9 1197.4 1514.9 1330.9 TRUE FALSE FALSE 1210.028624 1702.69 1504.780374 1542.962758 1479.562984 1544.370943 1352.114719 1333.707176 1452.455181 1322.983748 0.914620929 1.287007496 1.137414104 1.166274915 1.118353107 1.167339316 1.022019145 1.008105488 1.097863208 1 10.36957962 -7.290030701 24.95408551 0.959682099 1.128113151 0.260340127 0.087653897 424.2735625 370298.6169 0.013702009 0.015670364 5.13E-08 7.290030701 0.168431051 S(ph)YELPDGQVITIGNER ddPTM_HeLa_CUDC101_4h_R1 1 SYELPDGQVITIGNER 16 0 P60709;A0A2R8Y793;P63267-2;Q6S8J3;A5A3E0;Q562R1;A0A2R8YEA7;Q9BYX7;P63267;P68133;P68032;P62736;P63261 P60709;P63267;P63261 ACTB;ACTG2;POTEE;POTEF;ACTBL2;POTEKP;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Beta-actin-like protein 2;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 S(0.998)YELPDGQVIT(0.002)IGNER 149.52 0.00018975 19081000 1844.1 1520.7 1218.1 1333.5 1786.5 1631.9 1366.3 1242.7 1839.8 1739.6 TRUE FALSE FALSE 1627.937393 1567.550965 1283.954171 1387.885894 1654.713454 1600.774226 1418.998649 1384.163945 1763.962665 1729.252782 0.941410886 0.906490353 0.742490736 0.802592836 0.956895066 0.925702849 0.820584858 0.80044049 1.020072186 1 10.75593306 -7.289679947 2.090021457 0.976264441 0.847756916 0.519789825 0.06194021 0.218572315 1.806246084 0.012032261 0.014116051 5.13E-08 7.289679947 -0.128507525 TQLS(ph)PSIK ddPTM_HeLa_CUDC101_4h_R1 1 TQLSPSIK 8 0 Q8NFC6;H0Y9Y2 Q8NFC6;H0Y9Y2 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 T(0.268)QLS(0.728)PS(0.003)IK 121.36 0.0072043 47334000 3420.8 2871.4 2237.2 2277.8 2213.8 2378 2217.9 1967 2003.7 3623.7 TRUE FALSE FALSE 3019.81901 2959.864431 2358.149799 2370.698529 2050.492385 2332.643612 2303.445146 2190.915329 1921.106638 3602.146071 0.838338854 0.821694726 0.654651353 0.658135035 0.569241875 0.647570522 0.639464669 0.60822501 0.533322803 1 11.81464097 -7.289343027 0.537300417 0.979906548 0.598050991 0 0.144127755 0.137544882 0.092378896 0.01539334 0.017810987 5.14E-08 7.289343027 -0.381855557 LTQAEISEQPTMATVVPQVPTS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 LTQAEISEQPTMATVVPQVPTSPK 24 0 C9K0J5;Q70E73 C9K0J5 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 LTQAEIS(0.002)EQPT(0.026)MAT(0.027)VVPQVPT(0.209)S(0.736)PK 47.647 0.033233 21922000 654.33 893.96 828.37 565 785.46 833.78 682.47 724.03 899.09 706.5 TRUE FALSE FALSE 577.6304293 921.501848 873.1541879 588.0431421 727.5181807 817.8770357 708.7930965 806.4506486 862.0291297 702.2977066 0.822486566 1.312124245 1.243282129 0.837313203 1.035911372 1.164573126 1.00924877 1.148303121 1.227441186 1 9.455938914 -7.289265618 24.98436902 0.916174214 1.097792221 0 0.163195095 710.72459 638137.0672 0.023966245 0.027410107 5.14E-08 7.289265618 0.181618006 LQGMVTET(ph)T(ph)MK ddPTM_HeLa_CUDC101_4h_R1 1 LQGMVTETTMK 11 0 Q02241;A0A2U3TZL8;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 2 0 LQGMVT(0.148)ET(0.976)T(0.876)MK 48.112 0.036918 1340800 135.01 197.47 204.19 128.55 167.48 170.33 144.98 137.29 292.13 141.92 TRUE FALSE FALSE 119.1843325 203.5538166 215.229129 133.7928246 155.1253341 167.081239 150.5719272 152.9185387 280.0882778 141.0758535 0.844824465 1.442867872 1.525626985 0.948375085 1.099588131 1.184336191 1.067311828 1.083945515 1.985373618 1 7.140327268 -7.289236742 24.97484997 0.926722657 1.187745926 0 0.374490367 632.0462844 567867.378 0.03072287 0.035136723 5.14E-08 7.289236742 0.261023268 TVAT(ph)PLNQVANPNSAIFGGARPR ddPTM_HeLa_CUDC101_4h_R1 1 TVATPLNQVANPNSAIFGGARPR 23 1 Q15056;Q15056-2 Q15056 EIF4H Eukaryotic translation initiation factor 4H 1 0 T(0.065)VAT(0.935)PLNQVANPNSAIFGGARPR 103.45 4.82E-05 44075000 828.49 868.28 684.01 794.41 1159.1 745.24 830.47 538.84 772.14 819.73 TRUE FALSE FALSE 731.3756581 895.0306776 720.9896496 826.8094735 1073.595502 731.0257887 862.5015061 600.1793675 740.3120624 814.8542095 0.897554004 1.098393636 0.884808155 1.01467166 1.31753078 0.897124639 1.058473401 0.736548159 0.908520879 1 9.670398151 -7.288986192 24.9267378 0.951622729 1.007510025 0.03585019 0.146561876 2276.543575 2060007.037 0.024190513 0.027666473 5.14E-08 7.288986192 0.055887296 S(ph)VVADTDQK ddPTM_HeLa_CUDC101_4h_R1 1 SVVADTDQK 9 0 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 S(1)VVADTDQK 100.55 0.0022306 0 2545.7 1678.5 1750.8 1901 1689.6 2047 2127.9 1958.1 1985.6 2255.4 TRUE FALSE FALSE 2247.296905 1730.212595 1845.453544 1978.530997 1564.961574 2007.956886 2209.973816 2181.002189 1903.752728 2241.98478 1.002369385 0.771732534 0.823133841 0.882490824 0.698025066 0.895615752 0.985722042 0.97279973 0.849137222 1 11.13056077 -7.288401325 23.49251639 1.0011189 0.860521039 0.09200503 0.094224997 267.5647352 233134.0162 0.014438618 0.016514546 5.15E-08 7.288401325 -0.140597861 HATAEEVEEEERDR ddPTM_HeLa_CUDC101_4h_R1 2 HATAEEVEEEERDR 14 1 Q8TDN6 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog 0 0 ; ; 92.247 0.0070351 12005200 1895.24 1442.58 1468.84 1505.16 1639.61 1521.04 1534.27 1160.54 2029.43 2200.17 FALSE FALSE TRUE 1673.08284 1487.02418 1548.249933 1566.546931 1518.659237 1492.028696 1593.447308 1292.651183 1945.776036 2187.083291 0.764983596 0.679912002 0.707906251 0.716272186 0.694376498 0.682200217 0.728571845 0.591038845 0.889667094 1 11.09479245 -8.841656708 0.399621636 1.064982264 0.667518744 0.80813248 0.048632548 0.327382008 0.08776532 0.055065021 0.013292054 1.44E-09 8.841656708 -0.397463521 SLSDNGQPGT(ph)PDPADSGGTSAK ddPTM_HeLa_CUDC101_4h_R1 2 SLSDNGQPGTPDPADSGGTSAK 22 0 O75691 O75691 UTP20 Small subunit processome component 20 homolog 1 0 S(0.006)LS(0.005)DNGQPGT(0.99)PDPADSGGTSAK;S(0.024)LS(0.107)DNGQPGT(0.868)PDPADSGGTSAK ; 147.87 4.35E-07 26342000 11702.9 7769.4 8224.6 8449 10387.4 9649.2 9269.1 7950.1 9242.2 9256.8 TRUE FALSE FALSE 10331.1038 8008.766005 8669.246754 8793.58674 9621.142197 9465.157587 9626.612292 8855.107249 8861.232604 9201.740142 1.122733705 0.87035342 0.94213123 0.95564389 1.045578559 1.028626916 1.046173022 0.962329637 0.96299531 1 13.167691 -7.288337929 24.99817701 1.057957578 0.983487033 0.055493132 0.064905906 874.6276302 812832.9843 0.011844595 0.013546967 5.15E-08 7.288337929 -0.074470544 HAVSDPSILDSLDLNEDER ddPTM_HeLa_CUDC101_4h_R1 1 HAVSDPSILDSLDLNEDER 19 0 P05198;H0YJS4;G3V4T5 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 0 0 116.29 0.00011376 2914400 848.71 415.5 386.6 417.25 642.44 507.78 397.32 393.96 444.92 392.49 FALSE FALSE TRUE 749.2255004 428.3010625 407.5007654 434.2672585 595.0484811 498.0949425 412.6447655 438.806814 426.5802093 390.155452 1.920325595 1.097770287 1.044457442 1.11306213 1.525157416 1.27665765 1.057641931 1.124697378 1.093359601 1 8.60790525 HAYGDQYR ddPTM_HeLa_CUDC101_4h_R1 1 HAYGDQYR 8 0 O75874;C9J4N6 O75874 IDH1 Isocitrate dehydrogenase [NADP] cytoplasmic 0 0 104.06 0.013988 5018300 3702.8 1493.1 758.29 2246.9 1427 1478.2 1444.7 929.46 684.43 317.99 FALSE FALSE TRUE 3268.763397 1539.100641 799.2854511 2338.538294 1321.733053 1450.005798 1500.422563 1035.265969 656.2175057 316.0985813 10.34096193 4.869052669 2.528595502 7.398129672 4.181395081 4.587194893 4.74669186 3.275136399 2.075990037 1 8.30423075 -3.802625144 0.797294486 5.325610684 0.639805623 0 2.610037309 17.19832343 4.782751335 0.570108832 84.73695738 0.000157534 3.802625144 -4.685805061 YSPTS(ph)PTYSPT(ph)TPK ddPTM_HeLa_CUDC101_4h_R1 1 YSPTSPTYSPTTPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 2 0 YS(0.002)PT(0.319)S(0.578)PT(0.038)Y(0.003)S(0.07)PT(0.902)T(0.087)PK 98.592 0.0313 20459000 4701.4 3806.6 3953.7 3553.4 4536.9 4353.8 3760.3 3391.1 3929.8 4184.1 TRUE FALSE FALSE 4150.309019 3923.876834 4167.448981 3698.323011 4202.221926 4270.758519 3905.336031 3777.129117 3767.811981 4159.212787 0.997859266 0.94341815 1.001980229 0.889188219 1.010340692 1.026818953 0.938960383 0.90813558 0.90589546 1 12.02209478 -7.288309982 20.07265329 0.99898914 0.962454447 0 0.05089178 91.19436242 68122.54202 0.006930467 0.007928962 5.15E-08 7.288309982 -0.036534694 VTRS(ph)PPTQVAISSDSAR ddPTM_HeLa_CUDC101_4h_R1 1 VTRSPPTQVAISSDSAR 17 1 Q6ZUT6-4;Q6ZUT6;H0YM82;Q6ZUT6-3 Q6ZUT6-4 C15orf52 Uncharacterized protein C15orf52 1 0 VTRS(0.999)PPT(0.001)QVAISSDSAR 104.49 0.001052 79139000 483.37 473.74 565.48 369.47 519.12 597.17 501.97 350.03 544.1 407.64 TRUE FALSE FALSE 426.7101013 488.3353679 596.0515593 384.5385836 480.8255518 585.7799772 521.331151 389.8760003 521.6719677 405.2153392 1.053045283 1.205125573 1.470950139 0.948973413 1.186592672 1.445601685 1.286553348 0.962145217 1.287394423 1 8.662544977 -7.287995052 3.996169761 1.023366895 1.226136812 0 0.181741743 0.227956656 8.154772124 0.027207656 0.031748403 5.15E-08 7.287995052 0.202769918 (ac)ASEAPS(ph)PPRS(ph)PPPPT(ph)SPEPELAQLR ddPTM_HeLa_CUDC101_4h_R1 1 ASEAPSPPRSPPPPTSPEPELAQLR 25 1 Q8N302;Q8N302-2;Q8N302-3 Q8N302 AGGF1 Angiogenic factor with G patch and FHA domains 1 3 0 AS(0.566)EAPS(0.72)PPRS(0.72)PPPPT(0.828)S(0.166)PEPELAQLR 41.758 0.00014639 0 514.64 321.48 375.68 391.41 387.54 417.22 305.34 418.67 389.8 427.23 TRUE FALSE FALSE 454.3146793 331.3844178 395.9903972 407.3733916 358.9519463 409.2622236 317.1170661 466.3297005 373.732279 424.688817 1.069758989 0.780299373 0.932424828 0.95922797 0.845211675 0.963675537 0.746704536 1.098050341 0.880014411 1 8.730262309 -7.287730862 24.75904468 1.032941749 0.900924112 0.048616539 0.106982925 555.588711 523203.906 0.014787314 0.016912833 5.16E-08 7.287730862 -0.132017637 HCNGVDWR ddPTM_HeLa_CUDC101_4h_R1 2 HCNGVDWR 8 0 O15371-2;O15371-3;O15371 O15371-2 EIF3D Eukaryotic translation initiation factor 3 subunit D 0 0 ; ; 141.52 0.0040863 48260000 2228.87 2102.74 2195.33 2462.5 1958.67 1945.63 1945.2 1955 1849.57 1182.86 FALSE FALSE TRUE 1967.605237 2167.522927 2314.01618 2562.931394 1814.182816 1908.520349 2020.227016 2177.549298 1773.329942 1175.824296 1.673383722 1.843407161 1.967994868 2.179689093 1.542902985 1.623133963 1.718136819 1.85193426 1.508158955 1 10.19945678 -8.740756264 0.685264956 0.999342571 1.813982184 0.431203322 0.226653681 0.285908661 0.258580619 0.121430794 0.043288443 1.82E-09 8.740756264 0.814639612 HCQENK(ac)CPVPFCLNIK ddPTM_HeLa_CUDC101_4h_R1 2 HCQENKCPVPFCLNIK 16 1 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 1 ; HCQENK(1)CPVPFCLNIK;HCQENK(1)CPVPFCLNIK 141.34 0.0047185 2262070 2078.08 1805.98 1977.18 1580.65 2752.47 2327.39 2218.4 2666.48 2027.11 463.29 FALSE TRUE FALSE 1834.490613 1861.620103 2084.072331 1645.115739 2549.425772 2282.998913 2303.964431 2970.021305 1943.551668 460.5343305 3.983396006 4.042304732 4.52533545 3.572189151 5.53579962 4.957282796 5.002807128 6.449076884 4.220210176 1 8.847164896 -8.457192733 0.268661059 4.96E-14 5.808363686 0.372216413 1.083691166 0.670953505 0.108894031 1.413019586 0.544037347 3.49E-09 8.457192733 5.808363686 HCQLEPDHEGVPEETDDFGEFR ddPTM_HeLa_CUDC101_4h_R1 1 HCQLEPDHEGVPEETDDFGEFR 22 0 E9PFH4;C9J7E5;Q9Y5L0-5;Q9Y5L0-3;Q9Y5L0;Q9Y5L0-1 E9PFH4 TNPO3 Transportin-3 0 0 129.75 2.19E-07 3837100 1057.3 708.81 994.36 787.46 1104.9 806.09 832.14 657.03 957.54 576.98 FALSE FALSE TRUE 933.3648968 730.647596 1048.118109 819.5760225 1023.393728 790.7151763 864.2359185 731.8236394 918.0697959 573.5480973 1.627352442 1.273908151 1.827428448 1.428957792 1.784320675 1.378637956 1.506823791 1.275958621 1.60068493 1 9.163770664 -9.339988219 0.884196888 0.974250911 1.525378154 0 0.257837989 0.381638327 0.493320811 0.145404304 0.031770968 4.57E-10 9.339988219 0.551127242 HDADGQATLLNLLLR ddPTM_HeLa_CUDC101_4h_R1 2 HDADGQATLLNLLLR 15 0 O43242;O43242-2 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 0 0 ; ; 154.13 0.0001246 10800600 4457.3 3591.3 3570.1 3518.2 4084.7 3703.7 3508.7 3058.5 3404.9 3454.2 FALSE FALSE TRUE 3934.822051 3701.943696 3763.110405 3661.687403 3783.379819 3633.058093 3644.031734 3406.667277 3264.548581 3433.654265 1.145957556 1.078135249 1.09594913 1.066411211 1.101852291 1.058073357 1.061269264 0.992140447 0.950750521 1 11.74552907 -4.04500296 1.686442851 1.074662014 0.922345266 0.103377669 0.052468678 2.541200298 4.439877248 0.007675565 0.741333884 9.02E-05 4.04500296 -0.152316748 WAHDKFS(ph)GEEGEIEDDES(ph)GTENR ddPTM_HeLa_CUDC101_4h_R1 2 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 WAHDKFS(0.982)GEEGEIEDDES(0.864)GT(0.154)ENR;WAHDKFS(1)GEEGEIEDDES(0.898)GT(0.102)ENR ; 87.704 0.00020351 32299000 5591.4 3458 3956.6 3615.8 3794.8 4637.8 4251.2 4460.9 4889.8 4734 TRUE FALSE FALSE 4935.984568 3564.536881 4170.505764 3763.267953 3514.865164 4549.341692 4415.170208 4968.710824 4688.240374 4705.841957 1.048905725 0.757470589 0.886240082 0.799701305 0.746915259 0.966743408 0.938231723 1.055860114 0.996259631 1 12.20023715 -7.287684824 24.9175541 1.023094377 0.876589191 0.318551992 0.09110148 584.7822765 555193.6151 0.015936451 0.018226991 5.16E-08 7.287684824 -0.146505185 HDDSSDNFCEADDIQSPEAEYVDLLLNPER ddPTM_HeLa_CUDC101_4h_R1 2 HDDSSDNFCEADDIQSPEAEYVDLLLNPER 30 0 G3V5B3;G3V3E6;Q96HE7 G3V5B3 ERO1L ERO1-like protein alpha 0 0 ; ; 141.84 2.63E-16 5200900 824.41 612.35 516.61 767.56 915.53 891.4 749.01 922.09 832.4 764.59 FALSE FALSE TRUE 727.7739095 631.2157777 544.5394993 798.8644145 847.9931759 874.3980302 777.8995666 1027.056998 798.0881197 760.0421847 0.9575441 0.830500978 0.716459573 1.051079046 1.115718565 1.150459866 1.023495251 1.351315781 1.050057662 1 9.569935685 -5.913825857 3.872620493 0.945814959 1.149349521 0.483979185 0.1180283 0.177667074 5.168236524 0.017588343 0.03284729 1.22E-06 5.913825857 0.203534562 HDDYFQER ddPTM_HeLa_CUDC101_4h_R1 1 HDDYFQER 8 0 Q8N684-2;Q8N684;Q8N684-3 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 0 104.2 0.013869 9066100 3646.3 2319.6 2604.7 2884.7 2232.8 2076.7 2402.5 2329.3 2930.9 2842.6 FALSE FALSE TRUE 3218.886241 2391.064127 2745.517961 3002.350535 2068.090792 2037.090408 2495.16523 2594.458097 2810.087061 2825.692089 1.139149681 0.846187076 0.971626729 1.062518647 0.731888234 0.720917334 0.883027999 0.918167307 0.994477449 1 11.46438855 -6.302217049 1.002117403 1.057255924 0.823211363 0.316808924 0.105956024 0.366000366 0.728405282 0.020471395 0.042318535 4.99E-07 6.302217049 -0.234044561 HDDYYR ddPTM_HeLa_CUDC101_4h_R1 1 HDDYYR 6 0 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 0 0 102.98 0.0011388 0 189.41 164.11 161.75 166.43 143.04 117.42 55.687 117.07 218.75 238.69 FALSE FALSE TRUE 167.2076469 169.1660346 170.4946943 173.2177348 132.4882242 115.1804091 57.83486624 130.3967756 209.7330324 237.2702613 0.704713882 0.712967709 0.718567482 0.730044018 0.558385292 0.48543972 0.243751012 0.549570666 0.883941507 1 7.890387479 -5.93084076 0.144834771 1.18170695 8.98E-16 0.758566148 0.098899974 3.905634425 0.205450625 0.489092005 1.167560021 1.17E-06 5.93084076 -1.18170695 HDELADSLPCAEGEFIFLR ddPTM_HeLa_CUDC101_4h_R1 1 HDELADSLPCAEGEFIFLR 19 0 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 0 92.264 0.0027337 1457200 1984.5 1978.9 2193.3 1488.2 2393.8 2011.8 2045.7 1828.4 2122.5 1346.3 FALSE FALSE TRUE 1751.879918 2039.867563 2311.876432 1548.895229 2217.214143 1973.428267 2124.603334 2036.537665 2035.009652 1338.292148 1.309041468 1.524231885 1.727482625 1.157367045 1.656748974 1.474587048 1.587548233 1.521743716 1.520601952 1 10.38617737 -8.126214574 0.592267904 1.010776013 1.537080451 0.005869934 0.214511461 0.316193592 0.250811258 0.070725824 0.041122787 7.48E-09 8.126214574 0.526304438 HDGSEPCVDVLFGDGHR ddPTM_HeLa_CUDC101_4h_R1 1 HDGSEPCVDVLFGDGHR 17 0 Q96EL3 Q96EL3 MRPL53 "39S ribosomal protein L53, mitochondrial" 0 0 62.237 0.033633 5275400 1610.5 1282.6 1330.8 1522.2 2133.4 1855.3 1569.4 1618.6 1737.6 722.33 FALSE FALSE TRUE 1421.719631 1322.115386 1402.747073 1584.281896 1976.023332 1819.913244 1629.932284 1802.854881 1665.975393 718.033549 1.980018389 1.841300295 1.953595449 2.206417649 2.751993044 2.534579681 2.269994607 2.510822626 2.320191577 1 9.487907443 -9.31192655 0.194577364 3.00E-20 2.770856065 0.074192939 0.448279007 2.116039172 0.126453022 1.567526402 0.365161388 4.88E-10 9.31192655 2.770856065 HDIAFVEFENDGQAGAAR ddPTM_HeLa_CUDC101_4h_R1 1 HDIAFVEFENDGQAGAAR 18 0 P08579 P08579 SNRPB2 U2 small nuclear ribonucleoprotein B 0 0 136.35 6.98E-05 3437600 1768.2 1856.5 1298.9 1628.3 1552.8 1436.8 1299.9 1447.4 1515.7 1986.2 FALSE FALSE TRUE 1560.934276 1913.696565 1369.122463 1694.709112 1438.253038 1409.395434 1350.037578 1612.166165 1453.222204 1974.385994 0.790592256 0.969261619 0.693442147 0.858347414 0.728455855 0.713839866 0.683775909 0.81654052 0.736037537 1 10.94718835 -13.52287875 0.141586547 1.829677546 0.684487529 0 0.111964907 35.96849428 0.353172847 8.315963252 0.202041649 3.00E-14 13.52287875 -1.145190017 HDLDLICR ddPTM_HeLa_CUDC101_4h_R1 3 HDLDLICR 8 0 P62136-3;P62136;P62136-2;E9PMD7;F8VR82;F8VYE8;F8W0W8;P36873;P62140;P36873-2 P62136-3 PPP1CA;PPP1CC;PPP1CB Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit 0 0 ;; ;; 136.27 0.0017208 57500000 22127.8 19024.8 16754 16335.1 18553.9 17121.3 16330.1 15200.5 17439.7 6250.1 FALSE FALSE TRUE 19534.01283 19610.93154 17659.77192 17001.31598 17185.21576 16794.73973 16959.95743 16930.86348 16720.82818 6212.924127 3.144093253 3.156473689 2.84242517 2.736443523 2.766043076 2.703194081 2.729786664 2.725103853 2.691297663 1 12.60105672 -9.267920791 0.909468982 0.955853644 2.857950217 0.126070031 0.536834608 0.124360416 0.17791651 0.161138266 0.040079137 5.40E-10 9.267920791 1.902096574 HDNDLLHHQK ddPTM_HeLa_CUDC101_4h_R1 1 HDNDLLHHQK 10 0 P51786 P51786 ZNF157 Zinc finger protein 157 0 0 89.047 0.027675 79635000 4366 4371.8 3964.1 3917.2 4179.8 3514.3 3715.8 3766.7 4705.4 3728.2 FALSE FALSE TRUE 3854.224098 4506.489976 4178.411237 4076.960348 3871.464481 3447.270583 3859.119651 4195.485902 4511.44142 3706.024501 1.039988834 1.215990336 1.127464548 1.100089961 1.044640822 0.930180192 1.041309805 1.13207182 1.217326388 1 11.8556567 -7.504349478 14.05756123 1.017629903 1.081244232 0 0.094432983 1.936428935 1468.33818 0.013382908 0.014450151 3.13E-08 7.504349478 0.063614329 RPAS(ph)PSHNGSSGGGYGASK ddPTM_HeLa_CUDC101_4h_R1 2 RPASPSHNGSSGGGYGASK 19 1 K7ELX9;K7EQ79;K7ENM4;K7ENP7;Q6PI98;Q6PI98-3;Q6PI98-4 K7ELX9 INO80C INO80 complex subunit C 1 0 RPAS(0.998)PS(0.002)HNGSSGGGYGASK;RPAS(0.976)PS(0.024)HNGSSGGGYGASK ; 85.777 0.0024958 2756100 1488.01 488.89 496.89 525.96 1170.41 1136.95 1088.56 802.95 1139.83 1153.75 TRUE FALSE FALSE 1313.587723 503.9521214 523.7533764 547.4109222 1084.071186 1115.264573 1130.546124 894.3545824 1092.845725 1146.887444 1.145350166 0.439408526 0.456673738 0.477301347 0.945228926 0.972427224 0.985751592 0.779810248 0.952879667 1 10.1635081 -7.287644901 24.94163034 1.068637591 0.73104565 0.320225369 0.204965092 628.9230029 598588.3098 0.038927844 0.044522985 5.16E-08 7.287644901 -0.337591941 SLIPDIKPLAGQEAVVDLHADDSRIS(ph)EDETER ddPTM_HeLa_CUDC101_4h_R1 2 SLIPDIKPLAGQEAVVDLHADDSRISEDETER 32 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SLIPDIKPLAGQEAVVDLHADDS(0.42)RIS(0.567)EDET(0.013)ER;SLIPDIKPLAGQEAVVDLHADDS(0.219)RIS(0.67)EDET(0.111)ER ; 63.052 0.00027455 834320000 4575.1 3033.9 2682.7 3260.8 2789.9 3384.9 3241.7 2795.6 3574.9 4262.8 TRUE FALSE FALSE 4038.813713 3127.370863 2827.734877 3393.789518 2584.094635 3320.338672 3366.733455 3113.839804 3427.541109 4237.444676 0.953124825 0.738032258 0.667320778 0.800904738 0.609823805 0.783570979 0.794519743 0.734839046 0.808869819 1 12.04897882 -7.287559936 4.14313116 0.979602719 0.731378822 0.517251114 0.077524198 0.063051816 2.495245484 0.009418888 0.010986022 5.16E-08 7.287559936 -0.248223897 MEES(ph)DEEAVQAK ddPTM_HeLa_CUDC101_4h_R1 2 MEESDEEAVQAK 12 0 I3VM54;Q9Y2K7-3;Q9Y2K7;Q9Y2K7-4;Q9Y2K7-5;Q9Y2K7-2 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 MEES(1)DEEAVQAK;MEES(1)DEEAVQAK ; 199.31 2.59E-16 37413000 4915.2 3532.8 3784.9 3968.2 4019.6 4004.2 4082.2 3595.4 3777.6 3950.7 TRUE FALSE FALSE 4339.047707 3641.641381 3989.523143 4130.040348 3723.082116 3927.826556 4239.651821 4004.685803 3621.885729 3927.201061 1.104870273 0.927286718 1.015869338 1.051649835 0.94802432 1.000159273 1.079560673 1.019730271 0.922256251 1 11.93928575 -7.287419711 24.90837065 1.049522067 1.008542465 0 0.062552662 1247.742881 1196257.055 0.009556338 0.010929795 5.16E-08 7.287419711 -0.040979602 VVEGTAY(ph)GLS(ph)RS(ph)QPVMK ddPTM_HeLa_CUDC101_4h_R1 1 VVEGTAYGLSRSQPVMK 17 1 A0A0B4J203;P16234-3;P16234 A0A0B4J203 FIP1L1;PDGFRA Platelet-derived growth factor receptor alpha 3 0 VVEGT(0.397)AY(0.666)GLS(0.937)RS(1)QPVMK 53.828 0.0028027 0 544.3 372.1 404.82 410.87 490.43 291.28 405.16 543.31 341.93 452.58 TRUE FALSE FALSE 480.4979791 383.56396 426.7057937 427.6270545 454.251956 285.7243193 420.7871569 605.1582143 327.8355007 449.888034 1.068039029 0.852576488 0.948471089 0.950518845 1.009700018 0.635100953 0.93531529 1.345130718 0.728704646 1 8.813422185 -7.28671181 24.13099382 1.032129541 0.94267484 0 0.190714521 1135.066456 1083797.588 0.027472052 0.03142322 5.17E-08 7.28671181 -0.089454701 EYVSNDAAQS(ph)DDEEKLQSQPTDTDGGR ddPTM_HeLa_CUDC101_4h_R1 2 EYVSNDAAQSDDEEKLQSQPTDTDGGR 27 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 EYVS(0.007)NDAAQS(0.992)DDEEKLQSQPTDTDGGR;EYVS(0.004)NDAAQS(0.994)DDEEKLQS(0.002)QPTDTDGGR ; 114.64 1.55E-08 71621000 3226.1 2509 2360.63 2793.4 2738.9 3024.8 2605.5 2214.7 2864.2 2872.9 TRUE FALSE FALSE 2847.941448 2586.299316 2488.252798 2907.326926 2536.856804 2967.10698 2705.995008 2466.812496 2746.136464 2855.811863 0.997244071 0.905626645 0.87129437 1.018038675 0.8883137 1.038971446 0.947539662 0.863786767 0.96159572 1 11.47968522 -7.286106699 21.01544011 0.998698628 0.937110462 0.14447746 0.056120155 112.5596204 95895.0767 0.00889221 0.01017451 5.17E-08 7.286106699 -0.061588166 HDWDYCEHR ddPTM_HeLa_CUDC101_4h_R1 1 HDWDYCEHR 9 0 P17568 P17568 NDUFB7 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 0 0 126.31 0.0031612 5247500 1820.4 1793 1451.5 1934 1519.5 1595.7 1467.5 1426.6 1490.7 686.51 FALSE FALSE TRUE 1607.015472 1848.240205 1529.972481 2012.876879 1407.409512 1565.264681 1524.101967 1588.998377 1429.252715 682.426608 2.354854651 2.708335494 2.241959007 2.949587334 2.062360254 2.293674752 2.233356597 2.328453139 2.094368388 1 9.414530089 -9.029661838 0.737615235 0.957372246 2.405261565 0.281230962 0.409708038 0.225721384 0.216284261 0.189416719 0.052274423 9.34E-10 9.029661838 1.447889319 HEAMITDLEER ddPTM_HeLa_CUDC101_4h_R1 1 HEAMITDLEER 11 0 P35579 P35579 MYH9 Myosin-9 0 0 139.76 0.0013187 19272000 6208.9 4753.4 4818.6 4873.1 5090.3 5056.5 4318.1 4442.5 5409.8 5010.6 FALSE FALSE TRUE 5481.102154 4899.84662 5079.108091 5071.846081 4714.79871 4960.055687 4484.650563 4948.216243 5186.805754 4980.796728 1.100446867 0.983747558 1.01973808 1.018280078 0.946595287 0.995835799 0.900388193 0.99345878 1.041360657 1 12.28216082 -6.051184112 1.07103111 1.044267162 0.952884922 0.404853802 0.039050423 0.381704122 0.863201996 0.008047657 0.019122659 8.89E-07 6.051184112 -0.09138224 LLGS(ph)LDEVVLLSPVPELR ddPTM_HeLa_CUDC101_4h_R1 2 LLGSLDEVVLLSPVPELR 18 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 LLGS(1)LDEVVLLSPVPELR;LLGS(1)LDEVVLLSPVPELR ; 148.36 6.94E-05 107608000 490.36 745 658.77 745.7 541.27 684.73 535.32 362.28 757.26 543.82 TRUE FALSE FALSE 432.8807441 767.952567 694.3850989 776.1128692 501.3415905 671.6699161 555.9674717 403.5204908 726.0454223 540.5853345 0.800763018 1.420594526 1.284505988 1.435689834 0.927405089 1.242486381 1.028454596 0.746451051 1.343072732 1 9.078378563 -7.286104972 24.85467538 0.905915869 1.160588662 0 0.248938857 771.6764156 777589.8445 0.036646444 0.041917164 5.17E-08 7.286104972 0.254672794 RLS(ph)PPACTLR ddPTM_HeLa_CUDC101_4h_R1 2 RLSPPACTLR 10 1 P28360 P28360 MSX1 Homeobox protein MSX-1 1 0 RLS(1)PPACTLR;RLS(1)PPACTLR ; 89.886 0.015285 31282900 3551.5 4093.6 3853.8 3490.3 3524.6 4044.3 3403.2 3811.1 3512.3 3157.2 TRUE FALSE FALSE 3135.198554 4219.718964 4062.148085 3632.64952 3264.59728 3967.161716 3534.462564 4244.940219 3367.521507 3138.420834 0.99897328 1.344535735 1.294328677 1.157476869 1.040203801 1.264063019 1.126191404 1.352572024 1.07299871 1 11.6158231 -7.286077884 23.8896025 0.999515133 1.216168392 0.475805149 0.09559891 236.6644883 229470.2275 0.015581904 0.017824074 5.18E-08 7.286077884 0.216653259 TLQRLS(ph)SGFDDIDLPSAVK ddPTM_HeLa_CUDC101_4h_R1 2 TLQRLSSGFDDIDLPSAVK 19 1 Q9Y446;Q9Y446-2;E9PKC4 Q9Y446 PKP3 Plakophilin-3 1 0 T(0.007)LQRLS(0.758)S(0.234)GFDDIDLPSAVK;T(0.003)LQRLS(0.724)S(0.273)GFDDIDLPS(0.001)AVK ; 97.623 0.0010723 78052000 8248.2 9259.8 8371.2 8047.9 11194 9673 8754.2 4624.8 7739.2 7210.7 TRUE FALSE FALSE 7281.358499 9545.083462 8823.772393 8376.128148 10368.24092 9488.503641 9091.852426 5151.268538 7420.1869 7167.810436 1.015841388 1.331659584 1.231027588 1.168575568 1.446500436 1.323765985 1.268428135 0.71866696 1.035209701 1 12.80731677 -7.28598067 20.12106524 1.007480424 1.22708339 0.191082914 0.182471289 68.15572992 55879.41403 0.029941786 0.03426348 5.18E-08 7.28598067 0.219602967 HECQANGPEDLNR ddPTM_HeLa_CUDC101_4h_R1 2 HECQANGPEDLNR 13 0 P60981;P60981-2 P60981 DSTN Destrin 0 0 ; ; 177.36 1.47E-07 49984000 3042.4 2648.1 3074.1 2752.4 2360.7 2661.8 2542.14 2822.7 2676.6 1302.9 FALSE FALSE TRUE 2685.774484 2729.684822 3240.295145 2864.654769 2186.555864 2611.0306 2640.191191 3144.024758 2566.269415 1295.150293 2.073716463 2.107620125 2.501868055 2.211831928 1.688264193 2.016005875 2.038521094 2.427536615 1.981445265 1 10.33890381 -9.031586022 0.67846626 0.938083549 2.137388611 0.157055164 0.366741935 0.293116248 0.230793152 0.197058277 0.05036445 9.30E-10 9.031586022 1.199305062 SEGDNYSATLLEPAASSLS(ph)PDHK ddPTM_HeLa_CUDC101_4h_R1 3 SEGDNYSATLLEPAASSLSPDHK 23 0 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;C9JVY5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 SEGDNYSATLLEPAAS(0.014)S(0.243)LS(0.743)PDHK;SEGDNYSATLLEPAAS(0.026)S(0.474)LS(0.5)PDHK;SEGDNYSATLLEPAAS(0.003)S(0.106)LS(0.891)PDHK ;; 196 2.25E-19 313046000 10830 7859.5 6820.3 6938.1 9593.5 8907.4 7820.1 6086.3 9725.8 10105.6 TRUE FALSE FALSE 9560.523817 8101.641879 7189.026048 7221.065707 8885.806618 8737.506186 8121.723877 6779.13979 9324.898407 10045.49144 0.951722857 0.806495324 0.715647023 0.71883648 0.884556686 0.869793801 0.80849443 0.674844016 0.92826702 1 13.29426052 -7.285850262 3.214368026 0.979568275 0.784157905 0.610916699 0.064856919 0.11493804 2.382517426 0.01169714 0.013705464 5.18E-08 7.285850262 -0.195410371 KDIDHETVVEEQIIGENS(ph)PPDYSEYMTGK ddPTM_HeLa_CUDC101_4h_R1 2 KDIDHETVVEEQIIGENSPPDYSEYMTGK 29 1 A0A494C032;H0YJU4;H0YJV7;P25490 A0A494C032 YY1 Transcriptional repressor protein YY1 1 0 KDIDHETVVEEQIIGENS(0.994)PPDY(0.004)S(0.001)EYMTGK;KDIDHETVVEEQIIGENS(0.922)PPDY(0.018)S(0.024)EY(0.026)MT(0.01)GK ; 102.69 4.98E-09 33158000 6273.5 4691.6 3725.5 4096.1 5160.8 4828 4783.6 4487.4 4889.1 5923.2 TRUE FALSE FALSE 5538.12984 4836.142635 3926.911799 4263.156663 4780.098066 4735.913944 4968.105054 4998.227477 4687.569229 5887.968543 0.940584142 0.821360135 0.666938312 0.724045421 0.811841645 0.804337508 0.84377235 0.848888278 0.796126745 1 12.52355425 -7.285784792 2.882566882 0.974959298 0.78298363 0.272099394 0.07703327 0.110096593 1.781841013 0.010426483 0.012229561 5.18E-08 7.285784792 -0.191975668 GS(ph)DSESDLPHR ddPTM_HeLa_CUDC101_4h_R1 1 GSDSESDLPHR 11 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 GS(0.964)DS(0.036)ESDLPHR 161.48 6.72E-05 6962100 2593 2194.2 1853.6 2104.2 2752.4 2445.7 2275.5 1666.1 2400.1 2337.3 TRUE FALSE FALSE 2289.052471 2261.800701 1953.811223 2190.018371 2549.360936 2399.052347 2363.266797 1855.762089 2301.166862 2323.397636 0.985217698 0.973488423 0.840928472 0.94259301 1.097255544 1.032562102 1.017159853 0.798727717 0.990431783 1 11.18202037 -7.285551237 3.898147896 0.993351475 0.962905223 0.033221202 0.082611204 0.823575361 27.709754 0.01455284 0.017009281 5.18E-08 7.285551237 -0.030446252 HEEAPGHRPTTNPNASK ddPTM_HeLa_CUDC101_4h_R1 1 HEEAPGHRPTTNPNASK 17 1 E9PP21;P21291;E9PND2;E9PS42 E9PP21 CSRP1 Cysteine and glycine-rich protein 1 0 0 55.097 0.023891 20685000 919.5 755.05 851.27 841.49 1062.7 840.29 789.62 789.76 1157.9 768.74 FALSE FALSE TRUE 811.7176039 778.3121955 897.2922312 875.8095994 984.3067382 824.2628683 820.0759079 879.6630861 1110.170872 764.1675003 1.062224713 1.018509941 1.174208836 1.146096372 1.288077205 1.078641617 1.073162504 1.151139097 1.452784725 1 9.577745092 -6.765003989 24.99691347 1.02938936 1.150907032 0 0.145592661 58.56596121 410695.5582 0.009681291 0.013009674 1.72E-07 6.765003989 0.121517672 DFYLAT(ph)SPPDSFLDDHHLTRPHPER ddPTM_HeLa_CUDC101_4h_R1 1 DFYLATSPPDSFLDDHHLTRPHPER 25 1 Q13131;Q13131-2 Q13131 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 1 0 DFY(0.005)LAT(0.362)S(0.362)PPDS(0.272)FLDDHHLTRPHPER 59.339 0.0022083 19748000 2296.6 1365 1320.8 1050.4 2144.4 2056.6 2034.1 1315.9 1964.3 1912 TRUE FALSE FALSE 2027.396029 1407.054032 1392.206443 1093.239852 1986.211884 2017.373782 2112.555918 1465.696737 1883.330723 1900.627339 1.066698341 0.740310319 0.732498378 0.575199477 1.04502963 1.061425215 1.111504541 0.771164713 0.990899522 1 10.89225997 -7.285544047 24.50388032 1.031496446 0.870655914 0.162088983 0.161850856 835.4576426 849291.9023 0.029694353 0.033966734 5.18E-08 7.285544047 -0.160840532 HEEEFDLFMR ddPTM_HeLa_CUDC101_4h_R1 1 HEEEFDLFMR 10 0 P51532-5;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;P51532;A0A2R8Y4C5;P51532-4;P51532-2;P51532-3;A0A2R8Y6V2;A0A2R8Y6N0;A0A2R8YG32;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y526;A0A2R8YDA1;A0A2R8Y7Y7;A0A2R8YF58;K7EQF0;A0A2R8Y5K3;A0A2R8Y523;A0A2R8YFK5 P51532-5 SMARCA4 Transcription activator BRG1 0 0 237.51 1.53E-43 5248300 1677.2 1488.1 1561.3 1275.2 1633.7 1685 1410.2 1093.2 1360.3 1396.3 FALSE FALSE TRUE 1480.601158 1533.946597 1645.708601 1327.208168 1513.185206 1652.861432 1464.591886 1217.645469 1304.227858 1387.994746 1.06671957 1.105153029 1.185673509 0.95620547 1.090195198 1.190826866 1.055185469 0.877269509 0.939648988 1 10.43878639 -8.877455067 0.947371827 1.003816867 1.071038916 0.123143058 0.091941721 1.072650359 1.879066406 0.042494077 0.017248887 1.33E-09 8.877455067 0.067222049 HEEQPAPGYDTHGR ddPTM_HeLa_CUDC101_4h_R1 2 HEEQPAPGYDTHGR 14 0 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2 G3V1L9 TJP1 Tight junction protein ZO-1 0 0 ; ; 102.5 0.0048177 8649800 2971.4 2702 2929.8 2754.8 3156.5 2701.6 2572.9 2454.71 2827 3088.2 FALSE FALSE TRUE 2623.096996 2785.245417 3088.19385 2867.152651 2923.651284 2650.071481 2672.137615 2734.144264 2710.469863 3069.831249 0.854475958 0.907295936 1.005981632 0.933977284 0.952381759 0.863262918 0.870450979 0.890649694 0.882937739 1 11.58394364 -9.555414132 1.329359252 0.999946681 0.904967114 0 0.056251813 0.404818457 1.28304981 0.034373163 0.008137957 2.78E-10 9.555414132 -0.094979568 HEERQDEHGYISR ddPTM_HeLa_CUDC101_4h_R1 2 HEERQDEHGYISR 13 1 P04792 P04792 HSPB1 Heat shock protein beta-1 0 0 ; ; 81.239 0.010637 19138200 2385.85 4002 3752 4409.7 10511 5629.9 6169.4 10997.3 4766.4 2655.03 FALSE FALSE TRUE 2106.18428 4125.296876 3954.844469 4589.546626 9735.624471 5522.519038 6407.355825 12249.18818 4569.926975 2639.237763 0.798027487 1.56306375 1.498479797 1.738966716 3.688801595 2.092467421 2.42772967 4.641184038 1.731532883 1 11.36590561 -1.174610848 0.258644828 0.737476551 21.77560734 0.635193156 0.686202743 16.2267561 0.221595477 0.322194324 149.4492555 0.066894306 1.174610848 21.03813079 HSPEEDFRQS(ph)PQEHFR ddPTM_HeLa_CUDC101_4h_R1 1 HSPEEDFRQSPQEHFR 16 1 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 HSPEEDFRQS(1)PQEHFR 61.649 0.025173 13371000 651.59 621.54 687.89 522.94 741.43 508.02 537.71 607 536.59 588.82 TRUE FALSE FALSE 575.2116079 640.6889107 725.0794142 544.2677535 686.736186 498.3303649 558.4496548 676.0984264 514.4715331 585.3176725 0.982734052 1.094600319 1.238779296 0.929867283 1.173270889 0.85138445 0.954096692 1.155096554 0.878961216 1 9.193076028 -7.285242747 23.62284041 0.991846631 1.051487891 0.112402262 0.118200359 908.5403948 901646.4134 0.01863673 0.021321059 5.19E-08 7.285242747 0.05964126 HEGVFICR ddPTM_HeLa_CUDC101_4h_R1 2 HEGVFICR 8 0 M0R0P1;M0R299;M0QXL5;M0R2Q4;P22087;M0R2U2;M0R1H0;M0R2B0 M0R0P1 FBL rRNA 2-O-methyltransferase fibrillarin 0 0 ; ; 116.25 0.0080673 10610500 3914 4081.4 4617.8 4103.1 2957.2 3445.1 3188.1 3446.6 5458.8 5101 FALSE FALSE TRUE 3455.206853 4207.143096 4867.452236 4270.442153 2739.053248 3379.390457 3311.066085 3838.947012 5233.785954 5070.659025 0.681411792 0.829703412 0.959924975 0.842186811 0.540176974 0.666459811 0.652985355 0.757090349 1.032170755 1 12.30795755 -5.834940153 9.31899238 0.853383653 0.65517882 0.514904797 0.108985627 0.274580312 32.31557317 0.019330643 0.035106844 1.46E-06 5.834940153 -0.198204833 T(ph)ASLSNQECQLYPR ddPTM_HeLa_CUDC101_4h_R1 1 TASLSNQECQLYPR 14 0 Q9Y675 Q9Y675 SNURF SNRPN upstream reading frame protein 1 0 T(0.825)AS(0.092)LS(0.082)NQECQLYPR 168.93 7.86E-11 0 1013.6 1234.2 948.74 1068.7 1327.1 1008.3 1048.7 1128.7 1040.3 950.34 TRUE FALSE FALSE 894.7873445 1272.224239 1000.031754 1112.286205 1229.202477 989.0683574 1089.14871 1257.186646 997.4183937 944.6873354 0.9471783 1.346714613 1.058584906 1.177412 1.301173871 1.046979588 1.152919775 1.330796549 1.05581853 1 9.883693107 -7.284881036 24.98488884 0.97505641 1.191569776 0.441994639 0.101820698 426.7697531 454864.0128 0.015869186 0.018152558 5.19E-08 7.284881036 0.216513367 HEHQVMLMR ddPTM_HeLa_CUDC101_4h_R1 1 HEHQVMLMR 9 0 Q15233;Q15233-2;H7C367;C9JYS8 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 0 47.869 0.038373 402360 380.13 150.15 115.46 145.09 259.64 350.99 412.51 118.64 0 117.68 FALSE FALSE TRUE 335.5717376 154.7759435 121.7021168 151.0073973 240.4868745 344.2954505 428.4206489 132.145498 0 116.9800341 2.868624036 1.323097097 1.04036657 1.290881803 2.05579419 2.943198411 3.66233992 1.129641473 0 1 6.870118505 -9.605393773 1.404324625 0.999638181 2.158234649 0.269857624 0.90947715 0.592980088 2.097810604 0.643767299 0.148269448 2.48E-10 9.605393773 1.158596468 VSSGYSS(ph)PTTSEMSIK ddPTM_HeLa_CUDC101_4h_R1 2 VSSGYSSPTTSEMSIK 16 0 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 VSSGYS(0.078)S(0.906)PT(0.012)T(0.004)SEMSIK;VSSGYS(0.016)S(0.981)PT(0.001)T(0.001)SEMSIK ; 231.17 4.24E-43 18872800 6256.8 4748.1 5164.6 4954.7 5108.5 5223.5 5314 4286.5 5124.2 5576.2 TRUE FALSE FALSE 5523.387389 4894.383333 5443.813898 5156.774082 4731.656133 5123.87044 5518.96276 4774.457833 4912.978307 5543.032514 0.996455888 0.882979366 0.9821003 0.930316405 0.853622294 0.924380369 0.995657656 0.861344006 0.886334023 1 12.43645975 -7.284724415 22.52670724 0.998326411 0.922203015 0 0.056167661 156.0205032 150938.7632 0.007065372 0.008083872 5.19E-08 7.284724415 -0.076123396 HEK(ac)EDGAISTIVLR ddPTM_HeLa_CUDC101_4h_R1 2 HEKEDGAISTIVLR 14 1 P50990-3;P50990-2;P50990 P50990-3 CCT8 T-complex protein 1 subunit theta 0 1 ; HEK(1)EDGAISTIVLR;HEK(1)EDGAISTIVLR 125.73 0.0020118 1299100 2858.5 1198.27 1009.44 1148.2 2471.5 2624.5 2524 1817.56 2338.8 1287 FALSE TRUE FALSE 2523.430963 1235.187278 1064.01338 1195.028559 2289.182369 2574.442035 2621.351525 2024.463684 2242.393674 1279.344867 1.97243998 0.965484218 0.831686129 0.934094152 1.789339551 2.012312788 2.048979594 1.582422173 1.752767164 1 10.3211895 -1.000000023 0.037934101 1.78E-12 4.051366777 0.06306008 0.45840936 1390.753386 4.065519945 123.9897818 374.3354687 0.099999995 1.000000023 4.051366777 HELIEFR ddPTM_HeLa_CUDC101_4h_R1 3 HELIEFR 7 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13;K7EJJ5;J3KRF5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ;; ;; 172.03 6.01E-05 36261800 14878.9 10060.1 9341.8 9950.9 10719.2 11247.8 9504.9 7285.3 9374.2 10897.8 FALSE FALSE TRUE 13134.8179 10370.03976 9846.845965 10356.74071 9928.465972 11033.26696 9871.507177 8114.629104 8987.791508 10832.9794 1.212484342 0.957265714 0.908969324 0.95603807 0.916503725 1.018488686 0.911245818 0.749067159 0.829669399 1 13.40314246 -7.085358452 6.631863275 1.100154956 0.918595315 0 0.116676753 0.17592311 11.52960832 0.016461481 0.020240184 8.22E-08 7.085358452 -0.18155964 HELLQPFNVLYEK ddPTM_HeLa_CUDC101_4h_R1 1 HELLQPFNVLYEK 13 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 0 74.769 0.039062 16685000 1301.6 1125.3 1006 947.55 1312.6 1030.8 947.69 900.87 1197 1434.7 FALSE FALSE TRUE 1149.028421 1159.969159 1060.387403 986.1951847 1215.772113 1011.139207 984.2427208 1003.421399 1147.659153 1426.166341 0.8056763 0.813347732 0.743522949 0.691500813 0.852475674 0.708991075 0.690131784 0.703579499 0.804716197 1 10.47792654 -10.76503585 0.172093989 1.381569343 0.658138718 0.309276254 0.076233408 5.813089609 0.159068895 0.949917832 0.08911881 1.72E-11 10.76503585 -0.723430625 HELQANCYEEVK(ac)DR ddPTM_HeLa_CUDC101_4h_R1 2 HELQANCYEEVKDR 14 1 P23528;G3V1A4;E9PP50;E9PK25 P23528 CFL1 Cofilin-1 0 1 ; HELQANCYEEVK(1)DR;HELQANCYEEVK(1)DR 232.78 1.18E-34 31184000 5427.7 2118.2 2063.8 2133.13 4242 3771 4375.8 3403.6 4010.6 2203.9 FALSE TRUE FALSE 4791.473234 2183.459231 2175.375271 2220.128262 3929.076111 3699.074458 4544.576072 3791.052066 3845.28137 2190.791105 2.187097265 0.996653322 0.992963348 1.013391125 1.793450824 1.688465162 2.074399545 1.730448904 1.755202202 1 11.09723621 -9.718349238 1.628394195 1.000175383 1.644716088 0 0.477507075 0.514315924 2.463525918 0.350116847 0.076749074 1.91E-10 9.718349238 0.644540705 HELQANCYEEVKDR ddPTM_HeLa_CUDC101_4h_R1 2 HELQANCYEEVKDR 14 1 P23528;G3V1A4;E9PP50;E9PK25 P23528 CFL1 Cofilin-1 0 0 ; ; 244.73 3.09E-54 676635000 11704.7 9986.4 10498.7 10284.7 9975.3 10037 10199 9103.5 10296.1 4558.69 FALSE FALSE TRUE 10332.69281 10294.06915 11066.29148 10704.15452 9239.441993 9845.560948 10592.37885 10139.80564 9871.6904 4531.574709 2.280155017 2.271631785 2.442041054 2.3621269 2.03890316 2.172657758 2.337460933 2.237589865 2.178423845 1 12.14579675 -9.133937003 0.699241794 0.912978164 2.281025766 0.082701104 0.375581702 0.145566131 0.117288489 0.116067427 0.026842599 7.35E-10 9.133937003 1.368047602 SNSGLAT(ph)YSPPMGPVSER ddPTM_HeLa_CUDC101_4h_R1 2 SNSGLATYSPPMGPVSER 18 0 H0Y465;P21359-2;P21359-6;P21359;J3KSB5;P21359-4 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 SNS(0.003)GLAT(0.647)Y(0.001)S(0.35)PPMGPVSER;SNSGLAT(0.903)YS(0.097)PPMGPVSER ; 115.91 0.0010197 49342000 3682.4 2470.8 2558 2672.3 2988.5 3243.4 2869 2679.9 2932.57 2916 TRUE FALSE FALSE 3250.754654 2546.922419 2696.293218 2781.287945 2768.044309 3181.537549 2979.658291 2984.968983 2811.688223 2898.655502 1.121469816 0.878656473 0.930187535 0.959509656 0.954940767 1.097590778 1.027944952 1.029777075 0.969997373 1 11.50116817 -7.284472713 24.9980446 1.057360742 0.98484596 0.052065847 0.068862413 1045.530892 1134709.96 0.012794658 0.014635916 5.19E-08 7.284472713 -0.072514783 HENEALWR ddPTM_HeLa_CUDC101_4h_R1 2 HENEALWR 8 0 E9PMQ6;Q00613-2;Q00613;E9PI02 E9PMQ6 HSF1 Heat shock factor protein 1 0 0 ; ; 123.21 0.0063386 11648800 3105 2559.23 2599.15 3238.1 2651.9 2815.9 2584.56 2717.89 2389.86 3078 FALSE FALSE TRUE 2741.036607 2638.076843 2739.667911 3370.163714 2456.27462 2762.191399 2684.247345 3027.283612 2291.348959 3059.691919 0.895853792 0.862203422 0.89540646 1.101471587 0.802784949 0.902767819 0.877293341 0.989407983 0.748882247 1 11.57917068 -9.293553155 1.012208513 1.000173732 0.913377119 0 0.109076953 0.803221282 1.470440038 0.04992559 0.013315352 5.09E-10 9.293553155 -0.086796613 AEGDEEGPSGAS(ph)EEEDT ddPTM_HeLa_CUDC101_4h_R1 1 AEGDEEGPSGASEEEDT 17 0 Q96DX7 Q96DX7 TRIM44 Tripartite motif-containing protein 44 1 0 AEGDEEGPS(0.039)GAS(0.961)EEEDT 135.14 0.00023192 5044900 4096.7 3142.2 2976.7 2789.4 3676.1 2713.3 2464.9 2289.7 4473.5 4447.7 TRUE FALSE FALSE 3616.491036 3239.007458 3137.629406 2903.163789 3404.921427 2661.548323 2559.972019 2550.350193 4289.100437 4421.244883 0.817980259 0.732600782 0.709671029 0.656639446 0.77012731 0.601990705 0.579016111 0.57683984 0.970111485 1 12.11023693 -7.284467073 0.133905005 1.250486251 0.322439845 0.918217021 0.041147407 0.975516873 0.116524017 0.359616888 0.378889367 5.19E-08 7.284467073 -0.928046405 EFAGEDT(ph)SDLFLEER ddPTM_HeLa_CUDC101_4h_R1 1 EFAGEDTSDLFLEER 15 0 O14980 O14980 XPO1 Exportin-1 1 0 EFAGEDT(0.5)S(0.5)DLFLEER 277.41 1.89E-85 6988300 1975.3 1325.7 1653.8 1494.1 1230.8 1605.2 1725.2 1217.4 1566.7 1674.8 TRUE FALSE FALSE 1743.758328 1366.543246 1743.20943 1555.035856 1140.006336 1574.583484 1791.741542 1355.983895 1502.119963 1664.838215 1.047404074 0.820826452 1.047074373 0.934046229 0.684755026 0.945787687 1.076225621 0.814483884 0.902261823 1 10.70116627 -7.284412525 24.45222422 1.022385261 0.909903329 0.060680242 0.11473342 726.7825601 773572.9071 0.018205305 0.020826676 5.20E-08 7.284412525 -0.112481932 ELQGDGPPSS(ph)PTNDPTVK ddPTM_HeLa_CUDC101_4h_R1 2 ELQGDGPPSSPTNDPTVK 18 0 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 ELQGDGPPS(0.096)S(0.452)PT(0.452)NDPTVK;ELQGDGPPS(0.064)S(0.935)PTNDPTVK ; 263.19 1.13E-70 83323000 8365.8 6263.4 6322.5 6548.3 6723.1 7767.6 6867.9 6143.1 7039.2 7149.2 TRUE FALSE FALSE 7385.173606 6456.36793 6664.313475 6815.367978 6227.150307 7619.445972 7132.797204 6842.405673 6749.041197 7106.67624 1.039188132 0.908493325 0.937753916 0.959009212 0.876239482 1.072153242 1.003675553 0.96281376 0.949676187 1 12.79495926 -7.284401757 24.9413349 1.018505507 0.961894105 0.039967654 0.054946105 895.7394311 972933.8135 0.008877642 0.010155437 5.20E-08 7.284401757 -0.056611402 HEWQVNGLDDIKDR ddPTM_HeLa_CUDC101_4h_R1 2 HEWQVNGLDDIKDR 14 1 Q9Y281;Q9Y281-3 Q9Y281 CFL2 Cofilin-2 0 0 ; ; 95.631 0.0057012 76286000 11221.9 9996.5 10299.2 9236.4 10381.6 10387.1 9184.3 9548 10653.5 10600.4 FALSE FALSE TRUE 9906.485893 10304.48032 10856.00591 9613.100315 9615.770051 10188.98337 9538.541528 10634.90573 10214.35822 10537.34835 0.940130815 0.977900699 1.030240773 0.912288367 0.912541726 0.966939977 0.905212698 1.009258247 0.969348064 1 13.36322425 -6.226458437 24.99938156 0.975560923 0.939078752 0.238801943 0.03627228 833.746203 595842.621 0.005730091 0.009502066 5.94E-07 6.226458437 -0.036482171 RPTETNPVTSNS(ph)DEECNETVKEK ddPTM_HeLa_CUDC101_4h_R1 3 RPTETNPVTSNSDEECNETVKEK 23 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 RPTETNPVT(0.029)S(0.18)NS(0.79)DEECNETVKEK;RPTETNPVTS(0.006)NS(0.994)DEECNETVKEK;RPTETNPVT(0.006)S(0.113)NS(0.88)DEECNET(0.001)VKEK ;; 97.689 9.14E-05 345301000 5137.76 5790.93 5412.48 4861.49 5652.78 5053.25 5221.91 5391.51 4951.65 4624.21 TRUE FALSE FALSE 4535.519561 5969.341689 5705.095041 5059.762575 5235.785681 4956.867676 5423.320818 6005.257705 4747.540891 4596.704993 0.986689285 1.29861318 1.241127079 1.10073685 1.139030172 1.07835236 1.179827904 1.306426606 1.032813917 1 12.16638436 -7.284392026 24.46998509 0.99371437 1.18351603 0.572633227 0.072935194 299.8965947 319721.0458 0.012607414 0.014422415 5.20E-08 7.284392026 0.18980166 SLT(ph)PPPSSTESK ddPTM_HeLa_CUDC101_4h_R1 1 SLTPPPSSTESK 12 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 S(0.149)LT(0.849)PPPS(0.001)S(0.001)TESK 117.7 0.018426 140880000 4734.1 3546.9 4003.8 4068.2 3835.1 3675.3 3571.7 3978.6 4099.3 4283.9 TRUE FALSE FALSE 4179.175974 3656.175785 4220.257539 4234.11878 3552.192314 3605.199776 3709.461665 4431.507742 3930.325119 4258.419172 0.981391405 0.858575832 0.991038545 0.994293565 0.834157505 0.846605191 0.871088898 1.040646203 0.922954026 1 12.05610225 -7.284102126 0.681168825 0.998756986 0.907769351 0.003100856 0.072164414 0.717923273 0.710889884 0.019271883 0.022575547 5.20E-08 7.284102126 -0.090987635 HFEELETIMDR ddPTM_HeLa_CUDC101_4h_R1 2 HFEELETIMDR 11 0 Q92922;F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 Q92922;F8VXC8 SMARCC1;SMARCC2 SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2 0 0 ; ; 140.78 0.0012681 29286000 9809.3 7896.1 7851.6 7657.1 8249.8 8445.5 7381.2 6865.1 8346.4 8084.1 FALSE FALSE TRUE 8659.468724 8139.369482 8276.081246 7969.389635 7641.22869 8284.416159 7665.895357 7646.595234 8002.357859 8036.015414 1.077582394 1.012861358 1.02987374 0.991709103 0.950872826 1.030910934 0.953942341 0.951540638 0.995811661 1 12.97226462 -6.210521548 2.552581798 1.035517652 0.97415309 0.343508662 0.03137984 0.229474715 2.938275 0.005586467 0.009649254 6.16E-07 6.210521548 -0.061364562 HFELGGDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 HFELGGDKK 9 1 R4GN19;H0Y5B4;H7BZ11;J3KQN4;Q969Q0;P83881 R4GN19 RPL36A;RPL36A-HNRNPH2;RPL36AL 60S ribosomal protein L36a-like;60S ribosomal protein L36a 0 1 ; HFELGGDK(1)K;HFELGGDK(1)K 107.45 0.0039803 2539100 3070.7 1747.15 2049.6 2301.11 3106.3 3144.1 3176.8 2233.8 2652.6 2235.65 FALSE TRUE FALSE 2710.757201 1800.977621 2160.407576 2394.959212 2877.154438 3084.131531 3299.33024 2488.086763 2543.258705 2222.352254 1.219769366 0.81039251 0.972126526 1.077668586 1.294643742 1.387777984 1.484611737 1.119573532 1.144399453 1 11.11787179 -5.71583674 4.12302587 1.068544089 1.344640375 0.509027022 0.134770764 0.156905693 5.60372398 0.021713951 0.043825297 1.92E-06 5.71583674 0.276096285 HFFHEDEEPFNPDYVEVDR ddPTM_HeLa_CUDC101_4h_R1 2 HFFHEDEEPFNPDYVEVDR 19 0 Q9HCK8-2;Q9HCK8;A0A2R8Y840;A0A2R8Y4P3 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 0 0 ; ; 122.46 4.06E-05 17132400 1869.71 1520.55 1854.45 1747.86 1729.13 1608.38 1831.86 1372.58 1868.95 1822.75 FALSE FALSE TRUE 1650.545428 1567.396343 1954.707176 1819.145286 1601.575525 1577.702831 1902.515454 1528.828959 1791.91109 1811.908202 0.910943185 0.865052844 1.078811374 1.003994178 0.883916483 0.87074104 1.050006536 0.843767337 0.988963507 1 10.82329415 -5.754064946 0.007311709 1.875387901 9.90E-07 0.075409392 0.077045571 15002.13562 32.00296328 3992.91338 4216.238843 1.76E-06 5.754064946 -1.875386911 VDLKS(ph)PQVDIK ddPTM_HeLa_CUDC101_4h_R1 1 VDLKSPQVDIK 11 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 VDLKS(1)PQVDIK 110.44 0.034323 28949000 2530.9 1881.3 1861.4 1907.7 2305.4 2199.6 2004.2 1908.3 1919.5 2170.4 TRUE FALSE FALSE 2234.231739 1939.260623 1962.032914 1985.504252 2135.335235 2157.646295 2081.502665 2125.533158 1840.377398 2157.490364 1.035569741 0.89885019 0.909405181 0.92028418 0.989731065 1.000072274 0.964779588 0.985187787 0.853017667 1 11.0751384 -7.283900772 24.75973189 1.016796824 0.953430883 0 0.061728929 538.4026067 593492.5671 0.00646618 0.007397413 5.20E-08 7.283900772 -0.063365941 HFFLYGEFPGDER ddPTM_HeLa_CUDC101_4h_R1 2 HFFLYGEFPGDER 13 0 F5H8D7;P18887 F5H8D7 XRCC1 DNA repair protein XRCC1 0 0 ; ; 115.57 0.0029031 17716500 5788 4801.5 4368.5 5157.7 5453.7 5014.1 4837.2 4741.6 5112.9 5639.3 FALSE FALSE TRUE 5109.539414 4949.428524 4604.674324 5368.053299 5051.391416 4918.464397 5023.772424 5281.364578 4902.144098 5605.757193 0.911480686 0.88291882 0.821418796 0.95759647 0.901107779 0.87739519 0.896180882 0.942132239 0.874483844 1 12.45269354 -8.777869764 0.756150809 0.998200662 0.896673843 0 0.051581073 0.372092069 0.411471442 0.020421271 0.007598961 1.67E-09 8.777869764 -0.101526819 HFGAEYR ddPTM_HeLa_CUDC101_4h_R1 2 HFGAEYR 7 0 P04818-2;P04818 P04818-2 TYMS Thymidylate synthase 0 0 ; ; 102.77 0.017286 16171000 1520.96 1153.86 1215.99 1303.47 1275.44 1336.02 885.56 1166.24 1030.36 897.1 FALSE FALSE TRUE 1342.675374 1189.409059 1281.730098 1356.631141 1181.353332 1310.537644 919.7163458 1299.000047 987.8881247 891.7640093 1.505639789 1.333771095 1.437297406 1.521289407 1.324737621 1.469601409 1.031344993 1.45666346 1.107790979 1 9.800518165 -9.397345038 1.069492289 0.99528434 1.388731374 0.476731731 0.137392883 0.323465188 0.649094308 0.09734652 0.023656977 4.01E-10 9.397345038 0.393447034 HFHPLFEYFDYESR ddPTM_HeLa_CUDC101_4h_R1 2 HFHPLFEYFDYESR 14 0 Q96QK1 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 0 0 ; ; 117.27 0.0013734 23464000 5494.4 5080.4 5840 5667.6 6696.2 6753.3 6090.6 3811 6314 7528.4 FALSE FALSE TRUE 4850.354761 5236.921102 6155.728065 5898.749225 6202.234667 6624.492054 6325.516482 4244.828835 6053.734248 7483.620742 0.648129419 0.699784407 0.822560132 0.788221294 0.828774584 0.885198794 0.845248136 0.567215922 0.808931192 1 12.86952073 -9.499223525 1.257216918 0.999484845 0.757288962 0.13865427 0.108643962 0.332719813 0.944356057 0.068571942 0.016788931 3.17E-10 9.499223525 -0.242195883 HFIDVGAGVIDEDYR ddPTM_HeLa_CUDC101_4h_R1 4 HFIDVGAGVIDEDYR 15 0 H0YNW5;A0A0C4DGL3;H0YMM5;H0YKC5;H0YMP1;P33316;H0YKI0;P33316-2;H0YNJ9 H0YNW5;P33316;P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 0 0 ;;; ;;; 148.57 0.0002337 209844000 16809 15251.7 14124.4 15087.9 15542.2 15019.9 13812.8 12910.8 16112.3 17355.2 FALSE FALSE TRUE 14838.6745 15721.5868 14888.00779 15703.24978 14395.68287 14733.42043 14345.56432 14380.51328 15448.14417 17251.9705 0.860114762 0.911292238 0.862974336 0.910229343 0.834437021 0.854013774 0.83153193 0.833557725 0.895442302 1 14.07447353 -13.52287875 0.190760928 1.634879052 0.831474891 0.32824489 0.0405436 14.52104029 0.172082092 3.420574273 0.027952891 3.00E-14 13.52287875 -0.803404161 HFILDECDK ddPTM_HeLa_CUDC101_4h_R1 2 HFILDECDK 9 0 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6TRA5;A0A0A0MT12;F6S4E6;F6WLT2;F6UJC5;A0A140T996;A0A140T9X9;A0A140T9K1;A0A140T973;A0A140T9L4;A0A140TA18 Q13838-2 DDX39B Spliceosome RNA helicase DDX39B 0 0 ; ; 127.68 0.0035585 18061400 14793.3 11390.5 10871.9 11800.5 11571 11341.6 10948.6 10302.5 12378.2 5489.2 FALSE FALSE TRUE 13059.2518 11741.4278 11459.6678 12281.7754 10717.43038 11125.27788 11370.89117 11475.29496 11867.96536 5456.549994 2.393316622 2.151804312 2.100167287 2.250831644 1.964140417 2.038884989 2.083897551 2.103031213 2.174994341 1 12.41377335 -9.333393447 0.963755186 0.972856838 2.144771763 0 0.374318082 0.127315568 0.203918893 0.106704743 0.025647491 4.64E-10 9.333393447 1.171914925 CQT(ph)AEADSES(ph)DHEVPEPESEMK ddPTM_HeLa_CUDC101_4h_R1 2 CQTAEADSESDHEVPEPESEMK 22 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 2 0 CQT(0.848)AEADS(0.321)ES(0.83)DHEVPEPES(0.001)EMK;CQT(0.751)AEADS(0.353)ES(0.896)DHEVPEPESEMK ; 88.176 0.00071168 41995000 9904.8 8054.9 7123 7764.9 8669.7 8183.7 8233.8 8498.3 8679 8954 TRUE FALSE FALSE 8743.774359 8303.061922 7508.090926 8081.586185 8030.153503 8027.609557 8551.380424 9465.712121 8321.247947 8900.74121 0.982364744 0.932850616 0.843535471 0.907967774 0.902189302 0.90190349 0.960749248 1.063474591 0.93489382 1 13.11970977 -7.283862045 3.977070578 0.992220897 0.924842336 0.071499736 0.056410069 0.239088079 8.529066934 0.009469749 0.011074002 5.20E-08 7.283862045 -0.067378561 HFPNIDR ddPTM_HeLa_CUDC101_4h_R1 2 HFPNIDR 7 0 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 101.33 0.018835 5880500 0 0 123.16 0 59.324 134.38 54.674 61.689 54.815 114.44 FALSE FALSE TRUE 0 0 129.8184021 0 54.94778671 131.8169254 56.78279449 68.7114264 52.5555025 113.7593058 0 0 1.14116732 0 0.48301795 1.158735318 0.499148567 0.604007083 0.461988601 1 6.829840756 -5.44109666 24.99970701 0.480942873 0.743881812 0.105289199 0.406344292 243.6727168 74484.79542 0.069428969 0.15524788 3.62E-06 5.44109666 0.262938939 S(ph)PGSGSQSSGWHEVEPGMPSPTTLK ddPTM_HeLa_CUDC101_4h_R1 1 SPGSGSQSSGWHEVEPGMPSPTTLK 25 0 A0A590UJA3;S4R3W2;A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4 A0A590UJA3 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 S(0.233)PGS(0.208)GS(0.186)QS(0.186)S(0.186)GWHEVEPGMPSPTTLK 71.052 0.00032297 7455700 2086.7 946.32 744.21 679.59 2431.8 1802.6 1389 1273.1 1660.4 1453.9 TRUE FALSE FALSE 1842.100189 975.4749975 784.4442437 707.3066176 2252.410959 1768.218408 1442.574195 1418.024558 1591.957609 1445.252138 1.274587417 0.67495143 0.54277328 0.489400153 1.558489968 1.223467077 0.998147076 0.981160671 1.101508565 1 10.49710549 -7.283778313 24.76327627 1.129666268 0.931440205 0.082931844 0.305981915 1533.133146 1699512.575 0.057375025 0.065638951 5.20E-08 7.283778313 -0.198226062 GSSLSSESSPVSSPATNHS(ph)SPASTPK ddPTM_HeLa_CUDC101_4h_R1 2 GSSLSSESSPVSSPATNHSSPASTPK 26 0 Q14687-3;Q14687 Q14687-3 GSE1 Genetic suppressor element 1 1 0 GSSLSSESSPVSS(0.003)PAT(0.036)NHS(0.39)S(0.39)PAS(0.074)T(0.108)PK;GSSLSSESSPVSSPAT(0.053)NHS(0.356)S(0.356)PAS(0.101)T(0.134)PK ; 84.318 1.59E-05 7135900 2737.9 1413.62 1283.41 1315.34 2286.7 2133.4 1898.35 2074.5 2833.2 2378.2 TRUE FALSE FALSE 2416.967512 1457.171957 1352.795027 1368.985251 2118.014697 2092.708949 1971.569995 2310.652695 2716.414297 2364.054361 1.022382375 0.616386823 0.572235161 0.57908366 0.895924701 0.885220317 0.833978282 0.977410982 1.149048999 1 11.20704749 -7.283690638 23.95371066 1.010569478 0.763352382 0.468652879 0.139550637 347.2253177 373790.6054 0.024524936 0.028059226 5.20E-08 7.283690638 -0.247217096 HGDPGDAAQQEAK ddPTM_HeLa_CUDC101_4h_R1 2 HGDPGDAAQQEAK 13 0 O14737;O14737-2;Q3HM38;X6R2P6;K7ESJ4 O14737 PDCD5 Programmed cell death protein 5 0 0 ; ; 98.902 0.0010156 7664000 8442.3 7131.8 8430.4 7494.8 8527.3 7518.8 6795.7 7305.8 8328.6 7746.1 FALSE FALSE TRUE 7452.706392 7351.522305 8886.172925 7800.470339 7898.258068 7375.391417 7057.812425 8137.462741 7985.291583 7700.025853 0.967880697 0.954739951 1.154044557 1.013044695 1.025744357 0.957839825 0.916595939 1.056809795 1.037047373 1 12.91064757 -3.914613443 18.9897897 0.993011264 3.725703251 0.042455492 0.062100811 457.2429585 106219.4776 0.008154497 2376.69673 0.000121727 3.914613443 2.732691987 HGEAQVK(ac)IWR ddPTM_HeLa_CUDC101_4h_R1 2 HGEAQVKIWR 10 1 P18669;Q8N0Y7 P18669 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 0 1 ; HGEAQVK(1)IWR;HGEAQVK(1)IWR 125.74 0.0024434 2891500 2127.2 1999.26 1846.95 1639.86 2004.67 2018.85 1874.9 1775.12 1556.48 1641.6 FALSE TRUE FALSE 1877.852841 2060.854831 1946.801704 1706.740579 1856.789488 1980.3438 1947.215521 1977.192486 1492.321236 1631.83569 1.150760982 1.262905845 1.193013313 1.045902225 1.137853216 1.213568138 1.193266903 1.211636991 0.914504594 1 10.67228008 -8.839086656 0.690123996 0.996831601 1.176821878 0.642363502 0.062759856 0.42662273 0.378369902 0.041215724 0.013317932 1.45E-09 8.839086656 0.179990277 VASEAPLEHKPQVEAS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 2 VASEAPLEHKPQVEASSPR 19 1 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 0 VASEAPLEHKPQVEAS(0.5)S(0.5)PR;VASEAPLEHKPQVEAS(0.5)S(0.5)PR ; 109.37 0.00018991 119152000 9522.4 6213.7 5955.5 7056.3 8988.9 8088.4 7171.4 5769.5 7365.6 7784.3 TRUE FALSE FALSE 8406.198707 6405.136732 6277.472344 7344.086414 8325.806755 7934.127246 7448.0033 6426.276559 7061.98685 7737.998637 1.086353087 0.82775108 0.811252707 0.949093785 1.075963844 1.025346167 0.962523212 0.830483031 0.912637386 1 12.91774476 -7.283641955 24.82195779 1.040777847 0.933516188 0.063869221 0.093122781 813.5891168 909571.1334 0.015943255 0.018239346 5.20E-08 7.283641955 -0.107261659 HGESAWNLENR ddPTM_HeLa_CUDC101_4h_R1 4 HGESAWNLENR 11 0 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 0 0 ;;; ;;; 203.03 9.27E-17 169609000 24315.2 17224.4 16552.7 16017.7 25412.9 21113.2 19243.5 19087.7 22146.3 21878.9 FALSE FALSE TRUE 21465.00912 17755.06335 17447.58903 16670.97104 23538.241 20710.50089 19985.72824 21260.56661 21233.42014 21748.76333 0.986953087 0.816371169 0.802233615 0.766525011 1.082279514 0.952261081 0.918936306 0.977552898 0.976304713 1 14.40864575 -7.468292349 19.4712971 0.994244282 0.902643636 0.165349709 0.087758837 35.86985074 12795.05926 0.015648725 0.017868611 3.40E-08 7.468292349 -0.091600645 HGEVCPAGWKPGSDTIKPDVQK ddPTM_HeLa_CUDC101_4h_R1 2 HGEVCPAGWKPGSDTIKPDVQK 22 2 Q06830;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 0 ; ; 47.814 0.01978 108512000 8455.9 7345.6 7906.5 8097 8313.2 8212.9 8565.2 7376.6 8755.3 6090.6 FALSE FALSE TRUE 7464.71222 7571.909229 8333.949306 8427.230658 7699.951798 8056.252616 8895.562633 8216.322327 8394.402828 6054.37284 1.232945578 1.250651294 1.376517358 1.391924627 1.271800069 1.330650231 1.46927896 1.357088925 1.386502459 1 12.56376181 -8.44612442 0.310117166 0.913593936 1.413091266 0 0.130622285 0.515029973 0.107459735 0.098774308 0.036815052 3.58E-09 8.44612442 0.49949733 VAPGPSSGSTPGQVPGSS(ph)ALSSPRR ddPTM_HeLa_CUDC101_4h_R1 1 VAPGPSSGSTPGQVPGSSALSSPRR 25 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-5 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 VAPGPSSGSTPGQVPGS(0.174)S(0.619)ALS(0.104)S(0.104)PRR 102.03 1.70E-06 38773000 956.47 687.76 588.76 668.1 891.33 937.15 640.01 565.79 652.1 865.7 TRUE FALSE FALSE 844.3540365 708.9490704 620.5901465 695.3480058 825.5783617 919.2754251 664.6954001 630.1972466 625.220162 860.5507779 0.981178634 0.82383177 0.721154594 0.808026701 0.959360427 1.068240769 0.772406948 0.73231849 0.726534887 1 9.749116513 -7.283496851 9.02810114 0.991180154 0.845578855 0 0.12972458 0.307877567 119.2177217 0.017992084 0.020752412 5.21E-08 7.283496851 -0.1456013 QHEVEIPS(ph)PTQK ddPTM_HeLa_CUDC101_4h_R1 2 QHEVEIPSPTQK 12 0 Q08499-6;Q08499;Q08499-10;A0A087WSZ7;Q08499-11;Q08499-9;A0A1B0GW84;Q08499-2;Q08499-3;Q08499-4;Q08499-8;Q08499-5;D6RHE0 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 QHEVEIPS(0.996)PT(0.004)QK;QHEVEIPS(0.999)PT(0.001)QK ; 99.747 0.0075906 69542000 16393.7 13030 13102.4 13200 11831.5 11689.1 8828.2 4956.4 14161.2 16659.4 TRUE FALSE FALSE 14472.05534 13431.43886 13810.75538 13738.35306 10958.71382 11466.14989 9168.706631 5520.616542 13577.46934 16560.30915 0.873900071 0.811062084 0.833967244 0.829595205 0.661745727 0.69238743 0.553655524 0.333364341 0.819880186 1 14.01544198 -4.294933208 0.343554183 0.967823998 1.07E-21 0.857463639 0.067776076 1.210132451 0.101904096 0.019291977 0.484683021 5.07E-05 4.294933208 -0.967823998 down S(ph)SSGPPHETAAPK ddPTM_HeLa_CUDC101_4h_R1 1 SSSGPPHETAAPK 13 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;C9JQE8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.857)S(0.12)S(0.022)GPPHETAAPK 83.54 0.016738 4359800 3809.5 2369.4 2154.5 2213.5 3775.3 2848 3106.1 2409.6 3117.2 3393.5 TRUE FALSE FALSE 3362.956185 2442.398406 2270.978787 2303.776098 3496.80364 2793.679145 3225.903317 2683.899124 2988.707697 3373.315311 0.996929096 0.724035016 0.673218652 0.682941227 1.036607408 0.828170179 0.956300559 0.795626521 0.885985276 1 11.71995146 -7.283373484 23.3362926 0.998549878 0.817997573 0.242729799 0.11323761 270.5410218 287835.0498 0.019065013 0.021814845 5.21E-08 7.283373484 -0.180552305 GDVTAEEAAGAS(ph)PAKANGQENGHVK ddPTM_HeLa_CUDC101_4h_R1 3 GDVTAEEAAGASPAKANGQENGHVK 25 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 GDVTAEEAAGAS(1)PAKANGQENGHVK;GDVTAEEAAGAS(1)PAKANGQENGHVK;GDVT(0.029)AEEAAGAS(0.971)PAKANGQENGHVK ;; 66.98 0.00065533 144036500 9072.01 8770 7688.85 8183.12 10305.2 8375.4 7853.6 8323.29 9241.9 8173.9 TRUE FALSE FALSE 8008.60274 9040.193305 8104.532489 8516.863004 9545.005927 8215.653199 8156.515983 9270.77969 8860.94497 8125.281279 0.985640062 1.112600659 0.997446391 1.048193005 1.174729292 1.011122313 1.003844138 1.140979539 1.090540089 1 12.98820204 -7.283286403 24.4441079 0.993218914 1.065464661 0.021645322 0.064119318 573.1987966 641336.6513 0.009179329 0.010501897 5.21E-08 7.283286403 0.072245747 SPSPGGPQLS(ph)PQLPR ddPTM_HeLa_CUDC101_4h_R1 2 SPSPGGPQLSPQLPR 15 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 SPSPGGPQLS(1)PQLPR;SPS(0.001)PGGPQLS(0.999)PQLPR ; 161.08 5.78E-05 124229000 1738.46 1172.1 1126.9 1276.85 1048.07 941.4 1121.49 1675.74 1131.32 1595.65 TRUE FALSE FALSE 1534.680354 1208.211012 1187.823623 1328.925462 970.7559641 923.4443635 1164.746245 1866.499468 1084.686511 1586.159003 0.967545089 0.761721246 0.748867939 0.837826132 0.612016804 0.582189025 0.734318718 1.176741717 0.683844753 1 10.63132168 -7.283177537 4.879945457 0.985646367 0.763890109 0 0.18014521 0.173695449 11.49143121 0.025829785 0.030108677 5.21E-08 7.283177537 -0.221756258 GELSPSFLNPPLPPS(ph)IDDRDLSTEEVR ddPTM_HeLa_CUDC101_4h_R1 1 GELSPSFLNPPLPPSIDDRDLSTEEVR 27 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GELS(0.014)PS(0.015)FLNPPLPPS(0.74)IDDRDLS(0.167)T(0.065)EEVR 81.329 8.46E-06 19114000 746.72 910.52 718.62 946.61 1073.6 851.29 849.33 928.61 971.1 631.35 TRUE FALSE FALSE 659.1906136 938.572042 757.4707709 985.2168474 994.4026669 835.0530616 882.0889426 1034.319209 931.070847 627.5947021 1.050344452 1.495506636 1.206942583 1.569829771 1.584466318 1.330561043 1.405507312 1.648068738 1.483554345 1 9.293689364 -7.283081621 7.014598191 1.023183864 1.454803931 0.213722543 0.190143829 0.066305142 14.85273068 0.020270056 0.023475458 5.21E-08 7.283081621 0.431620067 QESEPDKLTVGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 QESEPDKLTVGKR 13 2 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 0 1 QESEPDKLTVGK(1)R 104.94 0.012895 40174000 1870 2043.5 2946.3 3109.5 3757.5 3546.8 4311.2 4790.5 1124.2 1279.3 FALSE TRUE FALSE 1650.801435 2106.457813 3105.58589 3236.31885 3480.316711 3479.150699 4477.484428 5335.831156 1077.86 1271.690667 1.298115554 1.656423113 2.442092225 2.54489471 2.736763587 2.735846689 3.520891161 4.19585619 0.847580334 1 10.31253207 -4.29460055 0.269548729 0.844410945 6.663401215 0.954034698 0.222425845 1.33779783 0.075896313 0.14598407 2.584761533 5.07E-05 4.29460055 5.81899027 up DQPAFTPSGILT(ph)PHALGSR ddPTM_HeLa_CUDC101_4h_R1 1 DQPAFTPSGILTPHALGSR 19 0 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 1 0 DQPAFTPSGILT(1)PHALGSR 111.09 0.0004016 10594000 2602.6 1547.5 1730.6 1560.4 2271.8 2346.1 1786.8 1251.9 2173 2301.9 TRUE FALSE FALSE 2297.527173 1595.176641 1824.161471 1624.039857 2104.21384 2301.352051 1855.717475 1394.411236 2083.42802 2288.208196 1.004072609 0.697129153 0.797200829 0.709743047 0.919590203 1.005744169 0.810991534 0.609390019 0.910506318 1 11.16000261 -7.283074701 23.45432256 1.001923202 0.803562953 0.34479155 0.109833538 254.0111626 275366.417 0.018507771 0.021177579 5.21E-08 7.283074701 -0.198360249 EFAPS(ph)DEELDSYR ddPTM_HeLa_CUDC101_4h_R1 2 EFAPSDEELDSYR 13 0 I3L0X5;I3L4C3;O75391 I3L0X5 SPAG7 Sperm-associated antigen 7 1 0 EFAPS(0.967)DEELDS(0.033)YR;EFAPS(1)DEELDSYR ; 241.76 5.18E-44 87339000 6444 6291.5 5764.9 5915.1 6381.4 6107.8 5446.7 6354.2 6008.3 6076.7 TRUE FALSE FALSE 5688.644088 6485.333658 6076.567932 6156.343345 5910.656836 5991.303891 5656.781044 7077.536443 5760.635331 6040.555518 0.941741876 1.073631993 1.005961772 1.019168407 0.978495573 0.991846507 0.936467023 1.171669795 0.95365986 1 12.56046552 -7.283058216 24.98749029 0.972489221 1.017833179 0.157157367 0.061499529 1330.937579 1538319.251 0.010051496 0.011499213 5.21E-08 7.283058216 0.045343959 SLENPT(ph)PPFTPK ddPTM_HeLa_CUDC101_4h_R1 1 SLENPTPPFTPK 12 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 SLENPT(0.986)PPFT(0.014)PK 136.81 0.0065105 15018000 4267.5 4267.8 4300.4 3744.5 4466.9 4373.7 3958.4 3242 4584.9 3951.5 TRUE FALSE FALSE 3767.270119 4399.285859 4532.892632 3897.216895 4137.385686 4290.27896 4111.076814 3611.056175 4395.908481 3927.996302 0.95908189 1.119982179 1.153996156 0.992164095 1.05330692 1.092230906 1.046609135 0.919312519 1.119122357 1 11.93957786 -7.282975034 24.98513694 0.980677558 1.056581271 0 0.076085068 846.1769169 981711.3855 0.01071556 0.012259476 5.21E-08 7.282975034 0.075903713 ASNTST(ph)PTKGNTETSASASQTNHVK ddPTM_HeLa_CUDC101_4h_R1 1 ASNTSTPTKGNTETSASASQTNHVK 25 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 AS(0.025)NT(0.078)S(0.177)T(0.41)PT(0.205)KGNT(0.057)ET(0.021)S(0.021)AS(0.005)ASQTNHVK 48.224 0.026111 10861000 1663.1 836.08 516.74 813.89 1706.8 1306.4 1466.7 972.77 1367.4 1219.7 TRUE FALSE FALSE 1468.153939 861.8386338 544.6765275 847.0839521 1580.892764 1281.482597 1523.27111 1083.506205 1311.035193 1212.44517 1.210903367 0.710826893 0.449238069 0.698657534 1.303888047 1.056940659 1.256362884 0.893653776 1.081315036 1 10.24370379 -7.282435097 24.4004078 1.09959325 0.918222692 0.106236959 0.248341343 1161.077738 1349355.742 0.047299576 0.054122323 5.22E-08 7.282435097 -0.181370559 S(ph)GEQITSSPVSPK ddPTM_HeLa_CUDC101_4h_R1 3 SGEQITSSPVSPK 13 0 A0A087WZV0;O43314-2;O43314;A0A087WWN8 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 S(0.983)GEQIT(0.015)S(0.001)SPVSPK;S(0.968)GEQIT(0.031)S(0.001)SPVSPK;S(1)GEQITSSPVSPK ;; 186.08 5.00E-11 89308000 9283 7022.1 7565.5 7079.6 8237.7 7088.2 7265 8134.9 7908.6 7781.4 TRUE FALSE FALSE 8194.860812 7238.442578 7974.513814 7368.336689 7630.021283 6953.004395 7545.213484 9060.944134 7582.604161 7735.115887 1.059436075 0.935789804 1.030949495 0.952582585 0.986413312 0.8988882 0.975449314 1.171403799 0.980283201 1 12.91720719 -7.282431343 24.76158573 1.028067033 0.988412009 0.000836356 0.071826101 1578.947327 1862481.691 0.011803408 0.013503919 5.22E-08 7.282431343 -0.039655024 KDPSGASNPSADS(ph)PLHR ddPTM_HeLa_CUDC101_4h_R1 1 KDPSGASNPSADSPLHR 17 1 P55317-2;P55317 P55317-2 FOXA1 Hepatocyte nuclear factor 3-alpha 1 0 KDPSGASNPS(0.271)ADS(0.729)PLHR 130.07 0.00013962 36014000 2369.3 1528.6 1970.6 1532.6 1795.8 1820.6 1695.8 1552.8 2165.9 2118.1 TRUE FALSE FALSE 2091.574246 1575.694354 2077.136597 1595.106052 1663.327412 1785.875088 1761.207574 1729.564475 2076.620685 2105.501447 0.993385328 0.748370112 0.986528221 0.757589625 0.789991104 0.848194662 0.836478919 0.821450148 0.986283191 1 11.03994815 -7.282359662 23.45776024 0.996876427 0.830176581 0.600226301 0.062126129 160.3497168 179798.427 0.009735053 0.011140578 5.22E-08 7.282359662 -0.166699847 HGGVIHIYVDK ddPTM_HeLa_CUDC101_4h_R1 2 HGGVIHIYVDK 11 0 Q14498-2;Q14498;Q14498-3;H0Y4X3 Q14498-2 RBM39 RNA-binding protein 39 0 0 ; ; 77.533 0.018455 1806260 2764.3 1990.52 2075.91 1748.04 1536.01 1417.82 1608.92 1597.99 1750.43 2481.9 FALSE FALSE TRUE 2440.272944 2051.845562 2188.139974 1819.332627 1422.701602 1390.777446 1670.976583 1779.898722 1678.276535 2467.137548 0.989111023 0.831670518 0.886914463 0.737426508 0.576660837 0.563721081 0.677293645 0.721442841 0.68025252 1 11.26862244 -6.4940421 1.086829588 0.995196434 0.630769528 0.384205123 0.115931081 0.114946026 0.270825664 0.011116752 0.019867208 3.21E-07 6.4940421 -0.364426906 AGAPS(ph)S(ph)ERT(ph)AS(ph)RVR ddPTM_HeLa_CUDC101_4h_R1 1 AGAPSSERTASRVR 14 2 H7BXC7;Q9H7P9-3;Q9H7P9;E7ESZ3;M0R3J0 H7BXC7 PLEKHG2 Pleckstrin homology domain-containing family G member 2 4 0 AGAPS(1)S(1)ERT(1)AS(1)RVR 67.846 0.0029364 0 1571.1 1646.6 1408.5 1645.1 1731.6 1533.6 1378.4 1566.2 1518.6 1413.6 TRUE FALSE FALSE 1386.93804 1697.329794 1484.64777 1712.194289 1603.863318 1504.349135 1431.56535 1744.489877 1456.002665 1405.191844 0.987009742 1.207898979 1.05654454 1.218477246 1.141383879 1.070564949 1.018768615 1.241460292 1.036159348 1 10.45655139 -7.281935634 24.75792512 0.993865704 1.129655182 0.405688661 0.070466615 437.978508 529043.7307 0.011080557 0.012678711 5.22E-08 7.281935634 0.135789477 HGHVWLQEAVRGPNAG ddPTM_HeLa_CUDC101_4h_R1 1 HGHVWLQEAVRGPNAG 16 1 M0R3C8 M0R3C8 PNKP 0 0 78.401 0.023255 14960000 2029.1 1994.4 1860.7 1788.4 1486.2 1721.3 1750.7 1512.9 1655.3 1529.1 FALSE FALSE TRUE 1791.251974 2055.8451 1961.29507 1861.338682 1376.565987 1688.46907 1818.225085 1685.122421 1587.067833 1520.004845 1.17845149 1.35252536 1.290321591 1.224561019 0.905632631 1.110831374 1.196196901 1.108629638 1.044120246 1 10.56986021 -9.053774554 1.029329869 1.007800097 1.170210887 0.20977486 0.114219707 0.601889283 1.221573405 0.063248752 0.022925507 8.84E-10 9.053774554 0.16241079 HGIVEDWDLMER ddPTM_HeLa_CUDC101_4h_R1 2 HGIVEDWDLMER 12 0 P61158;B4DXW1;F8WDR7 P61158 ACTR3 Actin-related protein 3 0 0 ; ; 229 5.10E-33 107531000 7067.4 6852.5 5976.1 5605.9 7125.7 6227.4 5784.5 5917.1 6556.1 7100.3 FALSE FALSE TRUE 6238.970085 7063.617403 6299.186043 5834.532833 6600.051307 6108.622721 6007.610103 6590.678746 6285.854783 7058.0671 0.88394882 1.000786377 0.892480328 0.826647402 0.935107475 0.865480964 0.85116931 0.933779554 0.890591531 1 12.78505743 -13.52287875 0.226450056 1.585738 0.879937086 0 0.057743873 33.47790097 0.428822611 8.695537937 0.034243641 3.00E-14 13.52287875 -0.705800914 HGK(ac)YMACCLLYR ddPTM_HeLa_CUDC101_4h_R1 2 HGKYMACCLLYR 12 1 Q9BQE3;F5H5D3;A0A1W2PQM2;P68363;P68363-2;Q71U36-2;Q71U36;P68366-2;P68366 Q9BQE3;P68363;P68366-2 TUBA1C;TUBA1B;TUBA1A;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain 0 1 ; HGK(1)YMACCLLYR;HGK(1)YMACCLLYR 101.39 0.01146 2491200 1180.05 643.49 347.83 721.85 1219.79 875.85 787.69 418.17 462.35 325.344 FALSE TRUE FALSE 1041.726328 663.3151642 366.6347419 751.2901631 1129.808522 859.1446205 818.0714672 465.7727825 443.2917373 323.4088394 3.221081804 2.051011238 1.133657146 2.32303534 3.493437359 2.656527948 2.529527234 1.440198058 1.370685285 1 8.337215301 -6.003620107 24.75725741 2.00089524 2.585099912 0.1553932 0.760689957 301.0279964 2058707.394 0.14439427 0.257659347 9.92E-07 6.003620107 0.584204673 AATAARPPAPPPAPQPPS(ph)PTPS(ph)PPRPTLAR ddPTM_HeLa_CUDC101_4h_R1 1 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36-3;Q96B36;H9KV91 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 2 0 AATAARPPAPPPAPQPPS(0.594)PT(0.516)PS(0.868)PPRPT(0.021)LAR 81.904 4.92E-06 149140000 1958.1 1800.4 1794.8 1563 1937.1 1994.7 1661.9 1661.2 1990.6 1748.9 TRUE FALSE FALSE 1728.574486 1855.86819 1891.832317 1626.745896 1794.203992 1956.654421 1726.00004 1850.304293 1908.546625 1738.497465 0.99429221 1.067512739 1.088199641 0.935719452 1.032042915 1.125485921 0.992811364 1.064312333 1.097813867 1 10.76362525 -7.281745596 23.65232464 0.99730465 1.042019707 0 0.058468142 553.0598404 644192.7954 0.00813473 0.009309928 5.23E-08 7.281745596 0.044715057 HGLQSLGK(ac)VAAAR ddPTM_HeLa_CUDC101_4h_R1 1 HGLQSLGKVAAAR 13 1 Q5JSZ5;Q5JSZ5-5;A0A1W2PQP5 Q5JSZ5 PRRC2B Protein PRRC2B 0 1 HGLQSLGK(1)VAAAR 128.68 0.001828 1714400 863.71 720.29 453.7 556.12 1139.3 903.17 923.51 814.2 706.14 332.91 FALSE TRUE FALSE 762.4672231 742.4812811 478.2283944 578.8009774 1055.256109 885.943537 959.1300901 906.8852369 677.0326103 330.9298365 2.304014746 2.243621455 1.4451051 1.749014182 3.188760856 2.677134061 2.898288351 2.74041545 2.045849409 1 8.37038156 -8.679511035 0.153617452 1.29E-13 3.357826137 0.397234958 0.504715968 5.098559237 0.318297578 4.673196488 2.055751984 2.09E-09 8.679511035 3.357826137 HGLQSLGK(ac)VGISR ddPTM_HeLa_CUDC101_4h_R1 2 HGLQSLGKVGISR 13 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 0 1 ; HGLQSLGK(1)VGISR;HGLQSLGK(1)VGISR 126.56 0.0022634 1577200 2508.2 1982.76 2056.56 1798.7 4551.8 3340.2 3535.8 2868.6 2938.3 2563.5 FALSE TRUE FALSE 2214.192598 2043.846485 2167.743854 1872.058761 4216.022782 3276.49125 3672.17699 3195.149829 2817.18203 2548.252188 0.868906386 0.80205817 0.850678698 0.734644228 1.654476273 1.285779824 1.441057132 1.253859349 1.105535019 1 11.31529235 -5.767188183 24.99999974 0.905316556 1.402311061 0.766376042 0.139234035 46.0839877 200407.8707 0.018706977 0.034588038 1.71E-06 5.767188183 0.496994504 HGNPEEEEWLTAER ddPTM_HeLa_CUDC101_4h_R1 1 HGNPEEEEWLTAER 14 0 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 0 0 151.07 0.00019126 2846700 3382.9 2570.7 2963.8 2838.6 3350.9 2969.7 2964.2 2718.1 2941.4 2606.6 FALSE FALSE TRUE 2986.36159 2649.90022 3124.031993 2954.370377 3103.710783 2913.05792 3078.530187 3027.517517 2820.154247 2591.095827 1.152547721 1.022694797 1.205679836 1.140201125 1.197837128 1.124257115 1.188119001 1.16843132 1.088402141 1 11.33934666 -13.52287875 0.187732037 0.312243833 1.185920022 0.365112944 0.054018166 24.56373842 0.288610261 6.162611849 0.053700583 3.00E-14 13.52287875 0.873676189 (ac)S(ph)ESGHSQPGLYGIER ddPTM_HeLa_CUDC101_4h_R1 1 SESGHSQPGLYGIER 15 0 M0QZH1;M0QX70;M0QYR7;M0R2N0;M0QZC7;Q9H0W8-2;Q9H0W8 M0QZH1 SMG9 Protein SMG9 1 0 S(0.517)ES(0.46)GHS(0.023)QPGLYGIER 76.332 0.0063586 7589700 389.37 614.99 530.88 465.99 558.56 421.63 461.98 670.56 449 345.24 TRUE FALSE FALSE 343.7286388 633.937113 559.5809786 484.9950864 517.3561416 413.5881102 479.7987234 746.8938399 430.49203 343.1864971 1.001579729 1.847208787 1.630544859 1.413211448 1.507507276 1.205140976 1.398069934 2.176349729 1.25439676 1 8.42284898 -7.281598908 23.76865683 1.000745924 1.56494512 0.424655465 0.265661499 241.1494333 284321.2468 0.042162783 0.048254661 5.23E-08 7.281598908 0.564199196 GLNPDGTPALSTLGGFS(ph)PASKPSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58-6;Q9UK58 Q9UK58-6 CCNL1 Cyclin-L1 2 0 GLNPDGTPALS(0.02)T(0.001)LGGFS(0.975)PAS(0.03)KPS(0.316)S(0.659)PR 106.84 2.08E-07 171610000 2707.3 1923.3 2076 2180.1 2260.9 2071.3 2260.5 1699.3 2565.9 2358.8 TRUE FALSE FALSE 2389.954398 1982.554593 2188.23484 2269.013901 2094.117911 2031.793404 2347.688242 1892.741443 2460.132516 2344.769753 1.019270398 0.845522078 0.933240817 0.967691561 0.893101725 0.8665215 1.001244681 0.807218466 1.049200039 1 11.19523055 -7.281595182 24.59482942 1.009099915 0.907900875 0.492819201 0.055392874 410.5558182 500973.6556 0.008412679 0.009627156 5.23E-08 7.281595182 -0.10119904 SSFDWLTGSSTDPLVDHT(ph)SPSSDSLLFAHK ddPTM_HeLa_CUDC101_4h_R1 1 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK 30 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 1 0 SSFDWLTGSSTDPLVDHT(0.744)S(0.213)PS(0.018)S(0.018)DS(0.006)LLFAHK 94.73 8.63E-08 0 853.77 326.79 443.82 321.01 699.5 671.92 586.94 370.28 390.79 593.25 TRUE FALSE FALSE 753.6923748 336.8580126 467.8142517 334.1021753 647.8992786 659.1042455 609.5784724 412.4311785 374.6814708 589.7213226 1.27804837 0.571215589 0.793280205 0.566542471 1.098653302 1.117653746 1.033672091 0.699366231 0.63535344 1 9.203889549 -7.280550094 24.98683867 1.131300616 0.855805852 0 0.252381017 827.0240172 1081313.014 0.037433049 0.042841274 5.24E-08 7.280550094 -0.275494764 TPKDS(ph)PGIPPSANAHQLFR ddPTM_HeLa_CUDC101_4h_R1 1 TPKDSPGIPPSANAHQLFR 19 1 B4DG22;B1AXG1;B7ZB17;P51812 B4DG22 RPS6KA3 Ribosomal protein S6 kinase alpha-3 1 0 T(0.37)PKDS(0.629)PGIPPSANAHQLFR 77.027 0.0040263 33103000 2174 1265.5 1164.8 1014.3 2218.9 1626.6 1794.6 1447.6 1609.2 1765.8 TRUE FALSE FALSE 1919.167016 1304.488555 1227.772611 1055.667538 2055.216168 1595.575315 1863.818323 1612.388933 1542.868095 1755.296943 1.093357465 0.743172578 0.699467185 0.601418206 1.170865235 0.909005921 1.061825084 0.91858471 0.878978398 1 10.7774994 -7.280315544 24.67301369 1.044085472 0.875215315 0.069752843 0.167383979 877.0195845 1146348.49 0.028662069 0.03280521 5.24E-08 7.280315544 -0.168870157 LENVSQLS(ph)LDKSPTEK ddPTM_HeLa_CUDC101_4h_R1 1 LENVSQLSLDKSPTEK 16 1 Q86W56-3;Q86W56-2;Q86W56 Q86W56-3 PARG Poly(ADP-ribose) glycohydrolase 1 0 LENVS(0.001)QLS(0.987)LDKS(0.012)PTEK 160.93 0.00028384 28849000 3844.3 2657.8 2948.8 2711.4 3342 2954.3 3122.2 2624.7 3411.5 3237.2 TRUE FALSE FALSE 3393.676982 2739.683668 3108.221048 2821.982612 3095.467318 2897.95165 3242.6243 2923.485239 3270.876526 3217.94499 1.054610005 0.851376787 0.96590248 0.876951788 0.961939165 0.900559723 1.007669276 0.908494473 1.016448863 1 11.65192395 -7.280117142 24.98983047 1.025788059 0.928142439 0.504243484 0.044872942 465.4022062 622681.5277 0.007400976 0.008471044 5.25E-08 7.280117142 -0.09764562 NSLPAS(ph)PAHQLSSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 NSLPASPAHQLSSSPR 16 0 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 2 0 NSLPAS(1)PAHQLS(0.107)S(0.085)S(0.809)PR 95.51 0.019116 8533000 2898.7 1701.4 1697.7 1553.3 2375.2 2204.2 2200.3 2265.4 2497.5 2449.4 TRUE FALSE FALSE 2558.91878 1753.818117 1789.482797 1616.650288 2199.986228 2162.158557 2285.166308 2523.283979 2394.551993 2434.83086 1.050963672 0.720303881 0.734951584 0.66396821 0.903547866 0.888011809 0.938531849 1.03632824 0.983457222 1 11.24960584 -7.280075192 24.82307593 1.024066185 0.83792083 0.347300073 0.106748197 586.1067968 780697.9455 0.019514135 0.022336692 5.25E-08 7.280075192 -0.186145355 S(ph)AEALGPGALVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SAEALGPGALVSPR 14 0 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 2 0 S(1)AEALGPGALVS(1)PR;S(1)AEALGPGALVS(1)PR ; 110.04 0.034304 5387600 3874 3074.7 2883.6 3138.5 3483.8 3316.9 3217.4 2725 3249.2 3469.2 TRUE FALSE FALSE 3419.895593 3169.427863 3039.496138 3266.501596 3226.807015 3253.635659 3341.496196 3035.202985 3115.266601 3448.565044 0.991686556 0.919057005 0.881379965 0.947206027 0.935695564 0.943475219 0.968952638 0.880135055 0.903351557 1 11.75178046 -7.279983671 8.866263772 0.996106778 0.927085812 0.025992097 0.039365148 0.132714078 58.44159807 0.0043568 0.005040076 5.25E-08 7.279983671 -0.069020966 S(ph)SVKTPEPVVPTAPEPHPTTSTDQPVTPK ddPTM_HeLa_CUDC101_4h_R1 2 SSVKTPEPVVPTAPEPHPTTSTDQPVTPK 29 1 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.377)S(0.377)VKT(0.243)PEPVVPT(0.003)APEPHPTTSTDQPVTPK;S(0.427)S(0.427)VKT(0.142)PEPVVPT(0.004)APEPHPTTSTDQPVTPK ; 83.435 4.88E-07 36473000 11399.6 5033.2 4723.5 4405.8 10992.7 8136.7 7073.5 6025.4 9634.3 10032.4 TRUE FALSE FALSE 10063.35617 5188.266926 4978.866698 4585.487567 10181.79042 7981.506004 7346.327264 6711.30718 9237.170076 9972.726839 1.009087718 0.520245567 0.499248278 0.459802784 1.020963532 0.800333363 0.736641781 0.672966109 0.926243166 1 13.28377232 -7.279952824 24.06194184 1.004291448 0.67875362 0.439989626 0.157064703 324.8493984 422206.023 0.028065874 0.032129723 5.25E-08 7.279952824 -0.325537828 DRT(ph)PPHLLYSDRDR ddPTM_HeLa_CUDC101_4h_R1 1 DRTPPHLLYSDRDR 14 2 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 DRT(1)PPHLLYSDRDR 73.466 0.03452 97815000 546 329.23 370.5 410.56 395.39 434.53 417.17 302.75 395.59 449.43 TRUE FALSE FALSE 481.9987077 339.3731861 390.5303507 427.3044114 366.2228674 426.2420642 433.2603866 337.2138362 379.2836128 446.7567704 1.078883947 0.759637477 0.874145344 0.956458726 0.819736581 0.954080816 0.96979031 0.754804087 0.848971158 1 8.803345783 -7.279909291 24.97371681 1.037250756 0.878468142 0.114660574 0.095703353 482.3262663 652166.2224 0.012709625 0.014547726 5.25E-08 7.279909291 -0.158782614 KDS(ph)EGYSESPDLEFEYADTDK ddPTM_HeLa_CUDC101_4h_R1 2 KDSEGYSESPDLEFEYADTDK 21 1 Q5VSL9;Q5VSL9-4 Q5VSL9 STRIP1 Striatin-interacting protein 1 1 0 KDS(0.865)EGY(0.13)S(0.004)ESPDLEFEYADTDK;KDS(0.685)EGY(0.235)S(0.065)ES(0.015)PDLEFEYADTDK ; 102.46 8.09E-05 18239800 5603.4 4017.8 4118.3 3870.3 4030.5 4571.3 4460.4 2828.9 4502.4 5162.4 TRUE FALSE FALSE 4946.577946 4141.583656 4340.947755 4028.147563 3733.178045 4484.110069 4632.439122 3150.930541 4316.809166 5131.693815 0.963926946 0.807059775 0.845909345 0.784954775 0.727474822 0.873807018 0.90271152 0.614013746 0.84120552 1 12.32521938 -7.279877675 2.367465696 0.986335619 0.796712662 0.299120501 0.089294785 0.152994047 1.63066402 0.013069345 0.01538188 5.25E-08 7.279877675 -0.189622957 HQQQLLAS(ph)PGSSTVDNK ddPTM_HeLa_CUDC101_4h_R1 2 HQQQLLASPGSSTVDNK 17 0 F2Z2X4;Q9C0E2 F2Z2X4 XPO4 Exportin-4 1 0 HQQQLLAS(1)PGSSTVDNK;HQQQLLAS(0.484)PGS(0.164)S(0.343)T(0.009)VDNK ; 136.14 0.00014483 68066000 6076.5 3620.6 3849.5 3885.1 5231.8 4358.8 4711.2 4226.6 4184.1 4768.8 TRUE FALSE FALSE 5364.221881 3732.146395 4057.615614 4043.551171 4845.860537 4275.663152 4892.912562 4707.739059 4011.629627 4740.434966 1.13158854 0.787300411 0.855958502 0.852991593 1.022239641 0.901955872 1.032165318 0.993102762 0.846257708 1 12.21080373 -7.279523559 24.99162711 1.062139032 0.923171269 0 0.104989354 673.7326757 931069.9193 0.015422218 0.017654081 5.25E-08 7.279523559 -0.138967763 SEDLDNS(ph)IDKTEAGIK ddPTM_HeLa_CUDC101_4h_R1 1 SEDLDNSIDKTEAGIK 16 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 S(0.013)EDLDNS(0.98)IDKT(0.007)EAGIK 64.249 0.026401 13317000 1321.8 866.99 873.72 1079.7 1040.7 1110.2 929.79 771.22 1139.8 1171.6 TRUE FALSE FALSE 1166.860608 893.7009343 920.9559461 1123.734833 963.9296344 1089.024785 965.6523118 859.0125674 1092.816962 1164.631271 1.0019142 0.767368142 0.790770409 0.964884647 0.827669373 0.935081181 0.829148535 0.737583292 0.938337299 1 10.18565755 -7.279504315 24.39876833 1.000903938 0.842502728 0.470670827 0.068696739 312.0548941 421464.9032 0.01103558 0.012634405 5.25E-08 7.279504315 -0.158401209 HGVESTLER ddPTM_HeLa_CUDC101_4h_R1 1 HGVESTLER 9 0 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 0 95.775 0.020068 3062400 1154.9 1070 1067.4 832.21 1274.5 1066.6 1040.7 988.04 1433.8 1066.3 FALSE FALSE TRUE 1019.524373 1102.965432 1125.106873 866.1511209 1180.482674 1046.256382 1080.840148 1100.51448 1374.698157 1059.9576 0.96185392 1.040575049 1.061464036 0.817156385 1.113707448 0.987073806 1.019701304 1.038262738 1.296936931 1 10.04979084 HGYIGEFEIIDDHR ddPTM_HeLa_CUDC101_4h_R1 4 HGYIGEFEIIDDHR 14 0 I3L3P7;I3L246;H3BN98;P62244 I3L3P7 RPS15A 40S ribosomal protein S15a 0 0 ;;; ;;; 140.31 0.00047784 735680500 33068.6 30877.9 30573.6 31542 34881.8 32375.2 29166.5 28342.4 32580.7 31107.5 FALSE FALSE TRUE 29192.34884 31829.2115 32226.5013 32828.4191 32308.63911 31757.697 30291.46168 31568.78425 31237.70976 30922.47121 0.944049673 1.029323022 1.042170953 1.061636338 1.044827203 1.027010318 0.979593819 1.02090108 1.010194481 1 14.916368 -7.239807343 23.84745184 0.973579014 1.029677964 0.354974828 0.02628755 305.8901142 337217.502 0.004964312 0.006076339 5.76E-08 7.239807343 0.05609895 HHEDNLLR ddPTM_HeLa_CUDC101_4h_R1 4 HHEDNLLR 8 0 O75643 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 ;;; ;;; 138.06 0.00059369 12263500 1985.15 1333.02 2215.63 2071.41 2111.28 2124.77 1558.3 779.42 1840.92 2241.24 FALSE FALSE TRUE 1752.453726 1374.088766 2335.41366 2155.891053 1955.535081 2084.243552 1618.404153 868.1460223 1765.036498 2227.909005 0.786591249 0.61676162 1.048253611 0.967674644 0.877744592 0.935515565 0.726422915 0.389668528 0.792239043 1 11.12147459 -4.337301789 2.412225546 0.892948098 0.317644463 0.603682185 0.119408346 0.244024022 1.925789923 0.018106564 0.269824017 4.60E-05 4.337301789 -0.575303635 HHGDVMDLQFFDQER ddPTM_HeLa_CUDC101_4h_R1 3 HHGDVMDLQFFDQER 15 0 B4E301;F5H0E3;B4DVD1;Q8NFH3-2;Q8NFH3 B4E301 NUP43 Nucleoporin Nup43 0 0 ;; ;; 94.673 0.0061588 13626500 1748.83 2026.92 2147.39 1913.98 2688.44 2353.13 2325.51 1771.99 2575.7 2329.9 FALSE FALSE TRUE 1543.834798 2089.367003 2263.484399 1992.040377 2490.119137 2308.247966 2415.2057 1973.706179 2469.528556 2316.041651 0.666583348 0.902128423 0.977307294 0.860105593 1.075161639 0.996634911 1.042816177 0.852189415 1.066271219 1 11.17744548 -6.995913208 10.43059671 0.839500295 0.969521537 0 0.122536794 0.187596429 350.262246 0.022273857 0.028839569 1.01E-07 6.995913208 0.130021242 NSSCGGGISSSS(ph)SSR ddPTM_HeLa_CUDC101_4h_R1 1 NSSCGGGISSSSSSR 15 0 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 0 NSSCGGGIS(0.004)S(0.04)S(0.219)S(0.714)S(0.018)S(0.004)R 90.706 0.010853 1771900 812.2 796.75 775.34 521.24 672.18 646.53 475.8 152.4 665.22 655.95 TRUE FALSE FALSE 716.9951472 821.2969231 817.2572257 542.4984202 622.5946206 634.1985174 494.1517654 169.7486 637.79935 652.0483802 1.099604215 1.259564394 1.253368999 0.831991056 0.954828874 0.972624941 0.757845246 0.260331296 0.978147281 1 9.348835202 -4.29391382 1.304359599 1.061095463 5.63E-17 0.795569118 0.12289819 0.449665934 0.676490627 0.018855224 0.622767349 5.08E-05 4.29391382 -1.061095463 down HHTAAFEER ddPTM_HeLa_CUDC101_4h_R1 3 HHTAAFEER 9 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ;; ;; 160.82 5.96E-05 4523380 0 0 253.61 166.9 118.85 0 0 0 289.98 530.78 FALSE FALSE TRUE 0 0 267.3209237 173.7069034 110.0826723 0 0 0 278.0269017 527.622897 0 0 0.506651484 0.329225484 0.208638922 0 0 0 0.526942449 1 9.043363364 -9.307076267 0.833779253 1.050752635 0.129254106 0.535373822 0.218234329 0.271482891 0.308498781 0.166464796 0.035995162 4.93E-10 9.307076267 -0.921498529 S(ph)HSY(ph)VR ddPTM_HeLa_CUDC101_4h_R1 1 SHSYVR 6 0 Q6IS01;A8MYR7;A8MXQ8;A0A0A0MTP4;O14490-3;O14490-5;O14490-2;O14490-4;O14490-6;O14490-7;O14490 Q6IS01 DLGAP1 Disks large-associated protein 1 2 0 S(0.999)HS(0.056)Y(0.944)VR 53.522 0.029536 5250000 840.31 487.33 503.74 622.76 562.32 628.63 486.33 682.72 738.83 739.46 TRUE FALSE FALSE 741.8101356 502.3440597 530.9737081 648.1588446 520.8387739 616.6399301 505.087911 760.4380852 708.3751147 735.061659 1.009180831 0.683403975 0.72235261 0.881774796 0.708564741 0.838895517 0.687136793 1.034522854 0.963694822 1 9.521721462 -7.279486864 24.33181204 1.004335406 0.788795322 0.433990342 0.102725141 315.9841604 426012.1761 0.015714955 0.017991919 5.25E-08 7.279486864 -0.215540084 HIADLAGNSEVILPVPAFNVINGGSHAGNK ddPTM_HeLa_CUDC101_4h_R1 1 HIADLAGNSEVILPVPAFNVINGGSHAGNK 30 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;P06733-2 P06733 ENO1 Alpha-enolase;Enolase 0 0 98.968 3.65E-09 11552000 992.07 752.38 839.22 747.54 1232.9 1032.6 1172.9 1142.3 816.17 2823.8 FALSE FALSE TRUE 875.7810585 775.559936 884.5907717 778.0279123 1141.951423 1012.904875 1218.139146 1272.334815 782.5271271 2807.003912 0.311998517 0.276294569 0.315136993 0.27717379 0.40682217 0.360849114 0.433964178 0.453271479 0.278776643 1 11.45481536 -9.169620688 0.802714486 1.0231851 0.350247957 0 0.228423595 0.139202805 0.153659471 0.058612363 0.014718189 6.77E-10 9.169620688 -0.672937143 HIAEEADR ddPTM_HeLa_CUDC101_4h_R1 3 HIAEEADR 8 0 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90;P67936-2;A0A2R8YHD2;K7ENT6;A0A2R8YE05;A0A2R8YEU4;A0A5F9UN72;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;P06753-7;P06753-2;A0A087WWU8;P06753-5;P06753-3;P06753-6;P06753-4 P67936;J3KN67;P06753-2 TPM4;TPM3 Tropomyosin alpha-4 chain;Tropomyosin alpha-3 chain 0 0 ;; ;; 149.65 0.001574 11799300 2762.12 1300.46 2541.41 2734.93 1719.56 1441 1742.76 1276.73 2642.19 3679.38 FALSE FALSE TRUE 2438.348481 1340.525631 2678.806312 2846.472267 1592.711485 1413.515326 1809.978837 1422.067782 2533.27781 3657.494884 0.666671741 0.366514698 0.732415601 0.778257347 0.43546513 0.386470896 0.494868453 0.388809234 0.692626481 1 11.83664013 -13.52287875 0.097873641 2.666975886 0.156989179 0.366793493 0.160107529 51.69128018 0.378824179 17.47535455 1.223620819 3.00E-14 13.52287875 -2.509986707 HIAEEADRKYEEVAR ddPTM_HeLa_CUDC101_4h_R1 1 HIAEEADRKYEEVAR 15 2 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90;P67936-2;A0A2R8YHD2;K7ENT6;A0A2R8YE05;A0A2R8YEU4;A0A5F9UN72;J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;P06753-7;P06753-2;A0A087WWU8;P06753-5;P06753-3;P06753-6;P06753-4 P67936;J3KN67;P06753-2 TPM4;TPM3 Tropomyosin alpha-4 chain;Tropomyosin alpha-3 chain 0 0 40.676 0.039885 13305000 1030.4 1556 1417 1216.5 2213.3 1537.5 1930.7 2564.8 1525.6 879.49 FALSE FALSE TRUE 909.618074 1603.938516 1493.607306 1266.114128 2050.029269 1508.174749 2005.167746 2856.766465 1462.714122 874.2587544 1.040444913 1.834626771 1.708427052 1.448214412 2.344877027 1.725089674 2.293563245 3.267644105 1.673090621 1 9.771916527 -1 0.230508572 0.880789485 13.10847427 0.644646376 0.379607418 14.11189495 0.171780592 0.202617637 65.83506006 0.1 1 12.22768479 HIDFSLR ddPTM_HeLa_CUDC101_4h_R1 2 HIDFSLR 7 0 P46781 P46781 RPS9 40S ribosomal protein S9 0 0 ; ; 143.85 0.009062 20430700 2956.5 1800.28 1366.81 1624.61 1913.68 2179.76 1590.08 1631.02 1211.15 823.11 FALSE FALSE TRUE 2609.943552 1855.744493 1440.703883 1690.868618 1772.511639 2138.18471 1651.409918 1816.688724 1161.225884 818.2141051 3.189805132 2.268042657 1.760790817 2.066535651 2.166317628 2.613233745 2.018310254 2.220309712 1.419220076 1 9.676334598 -5.521409896 16.10645972 2.059283554 2.279450464 0.049025949 0.559077448 2.999255715 32664.68208 0.119163645 0.243803029 3.01E-06 5.521409896 0.22016691 HIDLVEGDEGR ddPTM_HeLa_CUDC101_4h_R1 2 HIDLVEGDEGR 11 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 0 ; ; 128.88 0.0021467 16982000 8746.7 8012.9 7975.7 7854.4 7839.3 7972.1 7540.1 6872.6 8287.2 7052.5 FALSE FALSE TRUE 7721.425085 8259.767951 8406.890467 8174.736382 7261.010457 7820.045475 7830.924183 7654.949004 7945.598108 7010.551416 1.101400536 1.17819091 1.199176779 1.166061825 1.035726012 1.115467958 1.11701972 1.091918246 1.133377054 1 12.77531221 -8.596157656 0.883811941 1.008900573 1.126730633 0 0.059261468 0.335865291 0.533157992 0.020646649 0.010249323 2.53E-09 8.596157656 0.11783006 S(ph)QSFSHQQPSR ddPTM_HeLa_CUDC101_4h_R1 1 SQSFSHQQPSR 11 0 B3KNS5;Q8WVR3-2;Q8WVR3-3;Q8WVR3 B3KNS5 C7orf43 Uncharacterized protein C7orf43 1 0 S(0.798)QS(0.2)FS(0.002)HQQPSR 94.717 0.012141 13604000 2961.1 1692.8 1613.1 1894.9 2681.7 2163.4 2417.6 1752.2 2146.6 2295.2 TRUE FALSE FALSE 2614.004347 1744.953162 1700.309065 1972.182212 2483.876334 2122.136749 2510.847642 1951.663365 2058.116239 2281.548048 1.14571523 0.764811051 0.745243593 0.864405294 1.088680265 0.930130203 1.10050176 0.855411906 0.902070084 1 11.15579732 -7.279231762 24.9940691 1.068809969 0.914481273 0.091209515 0.126761431 863.9036736 1213576.453 0.021760432 0.024911847 5.26E-08 7.279231762 -0.154328696 EGVNQPAAVVMEDS(ph)SPHEALR ddPTM_HeLa_CUDC101_4h_R1 1 EGVNQPAAVVMEDSSPHEALR 21 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 EGVNQPAAVVMEDS(0.777)S(0.223)PHEALR 139 3.50E-06 3552000 1159.6 1410.8 1322.2 1108.8 1333.6 1376.7 1193.9 925.07 1605.2 1292.5 TRUE FALSE FALSE 1023.673446 1454.265076 1393.682131 1154.021657 1235.222985 1350.441741 1239.949123 1030.37623 1539.032977 1284.812153 0.796749504 1.131889259 1.084736106 0.898202632 0.961403566 1.051081077 0.965082032 0.801966441 1.197866142 1 10.32734173 -7.278979929 24.99459202 0.904020607 0.986291888 0 0.135998794 1460.603875 2081297.604 0.019599499 0.022439744 5.26E-08 7.278979929 0.082271282 NIIHGS(ph)DSVK ddPTM_HeLa_CUDC101_4h_R1 4 NIIHGSDSVK 10 0 Q32Q12;P22392-2;P22392;O60361 Q32Q12 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 1 0 NIIHGS(0.962)DS(0.038)VK;NIIHGS(0.53)DS(0.47)VK;NIIHGS(0.917)DS(0.083)VK;NIIHGS(0.961)DS(0.039)VK ;;; 131.13 0.002157 95466000 22466.6 15971.9 15530.4 15538.1 23118 19151.3 16181.3 13944.4 19214.9 19997.1 TRUE FALSE FALSE 19833.09921 16463.97531 16370.0204 16171.81088 21412.6312 18786.02086 16805.41816 15531.77413 18422.85369 19878.15636 0.997733333 0.828244582 0.823518042 0.813546819 1.077194022 0.945058511 0.845421369 0.781348826 0.926788851 1 14.27889634 -7.278905434 22.88784921 0.998929648 0.878759054 0.220496062 0.083327667 242.5842883 317886.1248 0.014277753 0.016354506 5.26E-08 7.278905434 -0.120170594 KGS(ph)QITQQSTNQSR ddPTM_HeLa_CUDC101_4h_R1 1 KGSQITQQSTNQSR 14 1 P50750;P50750-2 P50750 CDK9 Cyclin-dependent kinase 9 1 0 KGS(0.999)QIT(0.001)QQSTNQSR 62.525 0.035469 9556200 1697.5 1152.8 1239.5 1397.8 1099.4 1269.4 1474.8 1292.5 1125 1374.4 TRUE FALSE FALSE 1498.521623 1188.316402 1306.511119 1454.808326 1018.299452 1245.18831 1531.68353 1439.632976 1078.627024 1366.225008 1.096833695 0.869780889 0.956292786 1.064838015 0.745338027 0.911407933 1.121106349 1.053730511 0.789494423 1 10.41597939 -7.278803159 24.90531331 1.04572702 0.96024871 0 0.131408925 1267.055316 1817365.48 0.01855167 0.021241287 5.26E-08 7.278803159 -0.08547831 FFDS(ph)EDEDFEILSL ddPTM_HeLa_CUDC101_4h_R1 1 FFDSEDEDFEILSL 14 0 Q9Y4P1-4;Q9Y4P1 Q9Y4P1-4 ATG4B Cysteine protease ATG4B 1 0 FFDS(1)EDEDFEILSL 85.554 0.019432 1249000 298.22 365.1 273.19 304.6 416.98 351.96 383.86 226.88 371.85 274.31 TRUE FALSE FALSE 263.2631037 376.3482982 287.9594778 317.0229046 386.2202161 345.2469494 398.6656088 252.7071021 356.5221856 272.6783919 0.965471088 1.380191131 1.056040692 1.162625694 1.416394652 1.26613241 1.462035939 0.92675881 1.307482353 1 8.09105657 -7.278748366 24.12316537 0.983694664 1.245144898 0.03074302 0.185586136 365.162053 508917.441 0.024597512 0.028165445 5.26E-08 7.278748366 0.261450234 HIILVLSGK ddPTM_HeLa_CUDC101_4h_R1 1 HIILVLSGK 9 0 H3BRK5;H3BMW1;H3BNF0;H3BNS4;Q9Y5Y2 H3BRK5 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 0 0 99.139 0.0039874 0 1100.3 1130.4 696.06 918.93 800.09 1058.7 681.82 541.64 546.82 596.28 FALSE FALSE TRUE 971.3245019 1165.226284 733.6911091 956.4079374 741.0689547 1038.507061 708.1180258 603.2981082 524.2798482 592.7333 1.638720993 1.965852575 1.237809836 1.613555266 1.250256995 1.752064649 1.194665503 1.017823882 0.884512222 1 9.211239301 -9.396452335 1.172572097 1.005064864 1.480812088 0.342339696 0.279709226 0.476660206 1.191259902 0.178857852 0.04767273 4.01E-10 9.396452335 0.475747224 KGSITEYT(ph)AAEEK ddPTM_HeLa_CUDC101_4h_R1 1 KGSITEYTAAEEK 13 1 J3KN59;Q12982;Q12982-2 J3KN59 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 1 0 KGS(0.001)IT(0.068)EYT(0.931)AAEEK 157.09 0.00038847 38772000 5836.6 4279.3 3571.9 4200.8 4623.6 4357 4501.1 3614.8 4346.8 5457.2 TRUE FALSE FALSE 5152.442596 4411.140161 3765.007718 4372.126781 4282.52624 4273.897484 4674.708935 4026.29422 4167.623064 5424.740332 0.949804466 0.813152315 0.69404386 0.805960565 0.789443545 0.787852915 0.861738747 0.742209576 0.768262223 1 12.40533837 -7.278574932 3.115695524 0.978737915 0.783455458 0.211467863 0.07831477 0.074284135 1.438827274 0.007425759 0.008729899 5.27E-08 7.278574932 -0.195282457 LQPSSS(ph)PENSLDPFPPR ddPTM_HeLa_CUDC101_4h_R1 2 LQPSSSPENSLDPFPPR 17 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 1 0 LQPSS(0.021)S(0.977)PENS(0.002)LDPFPPR;LQPSS(0.072)S(0.927)PENSLDPFPPR ; 317.83 2.29E-145 379230000 6608.9 6984.8 6564 6014.3 7007.1 6326.9 6297.7 6353.8 6805.6 6576.9 TRUE FALSE FALSE 5834.21476 7199.993409 6918.869695 6259.58915 6490.200193 6206.224924 6540.604399 7077.090909 6525.070287 6537.780306 0.892384645 1.101290204 1.058290333 0.957448684 0.992722283 0.949286246 1.000431965 1.082491393 0.998055912 1 12.67458518 -7.278438748 24.9667583 0.949181641 1.014771654 0.163543115 0.055162004 969.6026224 1424039.67 0.010595254 0.012132745 5.27E-08 7.278438748 0.065590013 HSLSGSS(ph)PGMK ddPTM_HeLa_CUDC101_4h_R1 1 HSLSGSSPGMK 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HSLS(0.001)GS(0.436)S(0.563)PGMK 187.58 7.08E-11 43345000 13819 9200.8 8317.4 7424.7 12822 10625 9273.8 7789.6 13157 12633 TRUE FALSE FALSE 12199.15777 9484.265742 8767.063803 7727.511358 11876.14661 10422.34583 9631.493573 8676.336577 12614.66289 12557.85835 0.971436166 0.755245479 0.698133675 0.615352645 0.94571433 0.829946121 0.766969439 0.690908938 1.004523426 1 13.61630282 -7.278420489 5.668683062 0.987120745 0.759745565 0.624093783 0.083409061 0.086199364 9.956614909 0.014614074 0.017045145 5.27E-08 7.278420489 -0.22737518 QTQS(ph)ASSTLQK ddPTM_HeLa_CUDC101_4h_R1 2 QTQSASSTLQK 11 0 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3 C9J840 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 QTQS(0.999)AS(0.001)STLQK;QT(0.001)QS(0.997)AS(0.001)STLQK ; 157.5 0.00016529 36230000 5166.3 3036.62 4011.2 3903.9 3375.03 3681.9 3455.7 3251.08 3600.56 4244.5 TRUE FALSE FALSE 4560.714146 3130.174663 4228.057605 4063.117916 3126.060761 3611.673892 3588.987507 3621.169806 3452.143393 4219.253525 1.080929154 0.741878781 1.002086644 0.962994495 0.74090375 0.855998311 0.850621439 0.858248926 0.818188187 1 12.04277206 -7.278394893 24.93113225 1.038216549 0.863492369 0.071977706 0.105296516 465.4919744 684450.9306 0.013739539 0.015733163 5.27E-08 7.278394893 -0.17472418 LGNVVHAIQAT(ph)EQS(ph)IHAT(ph)DLVPR ddPTM_HeLa_CUDC101_4h_R1 1 LGNVVHAIQATEQSIHATDLVPR 23 0 O75192 O75192 PEX11A Peroxisomal membrane protein 11A 3 0 LGNVVHAIQAT(1)EQS(1)IHAT(1)DLVPR 45.424 0.038685 4998200 982.56 494.78 643.4 587.64 751.22 563.68 740.83 556.73 666.89 778.69 TRUE FALSE FALSE 867.3858063 510.0235853 678.1841502 611.6064992 695.8039972 552.9287432 769.4040613 620.1058928 639.4005119 774.0583172 1.120569067 0.658895556 0.876140899 0.790129743 0.898903844 0.7143244 0.993987202 0.801110044 0.826036615 1 9.596298452 -7.278173812 24.99929096 1.056935396 0.825921578 0.21829179 0.117876163 411.0373762 614040.4645 0.015538241 0.017793467 5.27E-08 7.278173812 -0.231013819 KDHS(ph)VDSFK ddPTM_HeLa_CUDC101_4h_R1 1 KDHSVDSFK 9 1 Q641Q2;Q641Q2-2;F8W7U3;A0A087WYF6;B1AP61 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 KDHS(1)VDSFK 83.998 0.0198 110560000 4910.1 7895 6673.3 8244.3 10020 10089 9769.9 5111.4 9648.8 2661.3 TRUE FALSE FALSE 4334.545521 8138.235592 7034.078784 8580.538189 9280.844563 9896.569134 10146.72832 5693.261115 9251.07238 2645.470469 1.638478135 3.07629047 2.65891412 3.243482885 3.508201914 3.740948633 3.835509953 2.152078876 3.496947892 1 11.3693086 -7.27805741 0.965347909 1.159635488 3.36574082 0.048549872 0.885139062 0.150207364 0.27770108 0.105618096 0.124535656 5.27E-08 7.27805741 2.206105332 SSLGQS(ph)ASETEEDTVSVSKK ddPTM_HeLa_CUDC101_4h_R1 2 SSLGQSASETEEDTVSVSKK 20 1 E9PPJ0;Q13435;E9PJ04;H0YCG1 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 S(0.003)S(0.003)LGQS(0.874)AS(0.105)ET(0.014)EEDTVSVSKK;S(0.003)S(0.003)LGQS(0.635)AS(0.296)ET(0.062)EEDT(0.001)VSVSKK ; 100.04 0.00041247 64809000 3100.5 3696.1 3121.4 3265.3 3628.8 3365.3 3388.8 3146.9 3113.7 2952.9 TRUE FALSE FALSE 2737.06409 3809.97246 3290.152326 3398.473048 3361.110654 3301.112509 3519.507151 3505.130376 2985.351968 2935.336019 0.932453413 1.297968081 1.120877577 1.157779902 1.145051412 1.124611454 1.199013376 1.194115547 1.017039258 1 11.51930995 -7.278054667 24.99258165 0.968102995 1.171753301 0.738988493 0.052512264 260.8530279 392372.0923 0.00871578 0.009981851 5.27E-08 7.278054667 0.203650306 TSSSTS(ph)PLEPPSDR ddPTM_HeLa_CUDC101_4h_R1 1 TSSSTSPLEPPSDR 14 0 A0A2R8Y549;Q8NI35-4;Q8NI35-3;Q8NI35-2;Q8NI35;A0A0U1RR46;A0A0X1KG69;A0A087WUZ6 A0A2R8Y549 INADL InaD-like protein 1 0 T(0.179)S(0.02)S(0.008)S(0.05)T(0.311)S(0.432)PLEPPSDR 107.99 0.0040608 8862000 1203.3 888.27 840.94 987.14 1018.1 1161.4 839.06 831.56 1158.8 1058.8 TRUE FALSE FALSE 1062.250998 915.6365458 886.4037601 1027.399836 942.9967913 1139.24823 871.4228253 926.2214291 1111.033774 1052.502211 1.009262487 0.869961637 0.842187077 0.976149813 0.895957065 1.082418848 0.827953439 0.880018512 1.05561182 1 10.03960755 -7.277930103 23.82700911 1.004373958 0.913407901 0.32879912 0.071310189 417.142063 602716.0062 0.011512666 0.013187982 5.27E-08 7.277930103 -0.090966057 HIVS(ph)NDSSDSDDESHEPK ddPTM_HeLa_CUDC101_4h_R1 2 HIVSNDSSDSDDESHEPK 18 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 HIVS(0.407)NDS(0.195)S(0.387)DS(0.011)DDESHEPK;HIVS(0.489)NDS(0.039)S(0.117)DS(0.349)DDES(0.006)HEPK ; 112.58 0.00023769 202352000 6887.3 4507.4 4930.3 4990.4 5696.5 5417.5 4874.2 4316.1 6131.3 6027 TRUE FALSE FALSE 6079.981134 4646.267651 5196.846931 5193.930082 5276.280544 5314.170214 5062.199527 4807.427378 5878.565219 5991.151136 1.014826867 0.77552169 0.867420436 0.866933577 0.880678925 0.887003197 0.844946057 0.802421316 0.981207966 1 12.54861751 -7.277570674 24.90669261 1.007001582 0.850836838 0.807020778 0.033999095 207.2071677 319926.8928 0.005590945 0.006404025 5.28E-08 7.277570674 -0.156164744 RAS(ph)PNLFSEAQYQEAPVEK ddPTM_HeLa_CUDC101_4h_R1 2 RASPNLFSEAQYQEAPVEK 19 1 F6VUX8;Q9HC77-2;Q9HC77 F6VUX8 CENPJ Centromere protein J 1 0 RAS(0.94)PNLFS(0.059)EAQYQEAPVEK;RAS(0.997)PNLFS(0.003)EAQYQEAPVEK ; 103.24 0.00048291 26891000 5061 4874.2 4688.6 4409.7 5603.6 4277.6 4370.7 5015.9 4536.3 4623.7 TRUE FALSE FALSE 4467.757252 5024.368325 4942.079898 4589.546626 5190.233592 4196.011907 4539.279363 5586.889781 4349.311794 4596.198027 0.972054995 1.093157496 1.07525391 0.998552847 1.129244989 0.912931054 0.987616142 1.215545925 0.946284683 1 12.16622524 -7.277422771 23.97649306 0.986803746 1.051557926 0.187336279 0.079604229 704.00976 1056074.206 0.012781477 0.014645223 5.28E-08 7.277422771 0.06475418 DHYQDPVPGIT(ph)PSSSSR ddPTM_HeLa_CUDC101_4h_R1 4 DHYQDPVPGITPSSSSR 17 0 Q7KZ85-2;Q7KZ85 Q7KZ85-2;Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 0 DHYQDPVPGIT(0.635)PS(0.045)S(0.062)S(0.062)S(0.197)R;DHYQDPVPGIT(0.975)PS(0.018)S(0.006)S(0.001)S(0.001)R;DHYQDPVPGIT(0.718)PS(0.104)S(0.037)S(0.037)S(0.104)R;DHYQDPVPGIT(0.971)PS(0.02)S(0.005)S(0.001)S(0.003)R ;;; 129.89 0.0012679 46628100 6907.2 4705.89 5449.42 4731.26 5902.7 5774.4 5264.64 4394.54 5301.96 5680.6 TRUE FALSE FALSE 6097.548487 4850.872893 5744.032129 4924.221233 5467.269581 5664.262941 5467.698928 4894.79667 5083.410965 5646.811539 1.079821497 0.859046359 1.0172169 0.872035697 0.968204719 1.003090488 0.968280753 0.866824869 0.900226779 1 12.46322077 -7.277298139 24.99806021 1.037693484 0.942035685 0.013565082 0.070915506 615.5271371 970249.343 0.009691005 0.011101126 5.28E-08 7.277298139 -0.095657799 HISDLYEDLR ddPTM_HeLa_CUDC101_4h_R1 1 HISDLYEDLR 10 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;E9PIA2;E9PKG0;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 167.09 9.29E-06 4123100 3649.4 2939.9 1981.1 2095.5 2621.8 2759 2372.8 2140.7 2606 2181.7 FALSE FALSE TRUE 3221.622864 3030.474834 2088.204258 2180.963548 2428.395037 2706.376672 2464.319691 2384.388635 2498.579577 2168.723151 1.48549291 1.397354398 0.962872673 1.005644057 1.119734917 1.247912473 1.136299804 1.099443529 1.152097065 1 11.08263018 -6.758883336 24.996537 1.248273383 1.101150638 0.240159461 0.14168733 120.376672 1177198.922 0.032471718 0.044714916 1.74E-07 6.758883336 -0.147122746 LAAPSVSHVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 LAAPSVSHVSPR 12 0 A0A0U1RRM7;A0A0U1RQW3;A0A0U1RQJ8;Q8WXE1-5;Q8WXE1-3;Q8WXE1-2;Q8WXE1 A0A0U1RRM7 ATRIP ATR-interacting protein 1 0 LAAPSVS(0.025)HVS(0.975)PR;LAAPSVS(0.003)HVS(0.997)PR ; 116 0.0027236 77033000 12378.1 5906.5 5505 5105 12139.2 9201.1 9677.3 7520.8 9790.8 8567 TRUE FALSE FALSE 10927.15788 6088.472264 5802.616952 5313.203966 11243.7154 9025.604348 10050.5567 8376.937472 9387.21908 8516.043103 1.283126183 0.714941457 0.681374775 0.623905246 1.320298085 1.059835447 1.180190915 0.983665462 1.102298211 1 13.05596754 -7.277297334 24.77831131 1.133698466 0.944547623 0.137284871 0.218521873 1204.254417 1881662.837 0.041969319 0.048078918 5.28E-08 7.277297334 -0.189150843 GSGDTSNFDDYEEEDIRVS(ph)ITEK ddPTM_HeLa_CUDC101_4h_R1 1 GSGDTSNFDDYEEEDIRVSITEK 23 1 A0A087WVC4;A0A0A0MS54;P22694-10;P22694-4;P22694-3;P22694;P22694-5;P22694-7;P22694-6;P22694-9;P22694-2 A0A087WVC4 PRKACB cAMP-dependent protein kinase catalytic subunit beta 1 0 GSGDTSNFDDY(0.01)EEEDIRVS(0.94)IT(0.051)EK 66.36 0.0012174 0 665.51 411.43 480.31 359.25 542.01 499.62 470.43 561.74 398.42 535.71 TRUE FALSE FALSE 587.4999266 424.1056706 506.2770115 373.9017678 502.0270021 490.0905809 488.5746427 625.686211 381.996959 532.5235731 1.103237408 0.796407318 0.950712864 0.702131862 0.942731979 0.920317157 0.917470451 1.174945566 0.717333426 1 9.05670158 -7.277235889 24.68807806 1.048750999 0.909519838 0 0.156338668 731.3760191 1143051.689 0.019634675 0.022494054 5.28E-08 7.277235889 -0.139231161 RQLHLEGASLELS(ph)DDDTESK ddPTM_HeLa_CUDC101_4h_R1 1 RQLHLEGASLELSDDDTESK 20 1 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 1 0 RQLHLEGASLELS(0.998)DDDT(0.001)ESK 78.917 0.0064106 34843000 4824.7 2663.8 2969.1 2879.5 3788.9 3617.8 3514.2 3261.9 3948.3 3671.2 TRUE FALSE FALSE 4259.15598 2745.868521 3129.618527 2996.938456 3509.400396 3548.796493 3649.743871 3633.221511 3785.549403 3649.363539 1.167095559 0.752423948 0.857579272 0.821222228 0.961647246 0.972442579 1.000104219 0.995576755 1.037317703 1 11.83342916 -7.277099122 24.99716862 1.078906235 0.911384004 0.419724638 0.085580265 625.7467634 998858.5011 0.017239437 0.019750563 5.28E-08 7.277099122 -0.167522231 KNTFTAWS(ph)DEESDYEIDDRDVNK ddPTM_HeLa_CUDC101_4h_R1 2 KNTFTAWSDEESDYEIDDRDVNK 23 2 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 KNT(0.058)FT(0.203)AWS(0.723)DEES(0.011)DY(0.004)EIDDRDVNK;KNT(0.071)FT(0.071)AWS(0.823)DEES(0.019)DY(0.017)EIDDRDVNK ; 76.817 0.00090353 68174000 2063.01 2309.1 2177.61 1921.45 2282.18 2266.73 1969.67 2030.07 2791.18 2001.35 TRUE FALSE FALSE 1821.187095 2380.240634 2295.338184 1999.815036 2113.828128 2223.495902 2045.640832 2261.164963 2676.126379 1989.445881 0.915424296 1.19643397 1.153757539 1.005212082 1.062521051 1.117645834 1.028246534 1.136580283 1.345161688 1 10.95815094 -7.277058103 24.99730507 0.960061472 1.094945192 0 0.134703186 476.6251858 762822.9378 0.010614606 0.012159849 5.28E-08 7.277058103 0.134883721 HIYYITGETK ddPTM_HeLa_CUDC101_4h_R1 4 HIYYITGETK 10 0 P07900;P07900-2;Q58FG0 P07900 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 0 ;;; ;;; 132.88 0.0018327 104766300 12787.96 11781.6 12399.16 12349.99 12641.1 12915.1 12288.64 12536.3 13684.8 12363.3 FALSE FALSE TRUE 11288.97471 12144.57713 13069.4961 12853.67597 11708.59124 12668.76599 12762.61696 13963.38172 13120.70675 12289.76254 0.918567358 0.988186476 1.063445779 1.045884811 0.952710941 1.030838956 1.038475472 1.136179944 1.067612715 1 13.58516942 -6.937866523 5.461514482 0.961123142 1.039184301 0.073228153 0.056818324 0.172746981 10.23053354 0.008320006 0.010954887 1.15E-07 6.937866523 0.078061159 HK(ac)LDVTSVEDYK ddPTM_HeLa_CUDC101_4h_R1 2 HKLDVTSVEDYK 12 1 E7ENZ3;B7ZAR1;E9PCA1;P48643-2;P48643 E7ENZ3 CCT5 T-complex protein 1 subunit epsilon 0 1 ; HK(1)LDVTSVEDYK;HK(1)LDVTSVEDYK 174.21 1.51E-06 6580900 10265.6 4846.8 3733.8 3243.9 10034 8413.9 9214.1 7522.9 9066.7 7156.4 FALSE TRUE FALSE 9062.28193 4996.124163 3935.660522 3376.200263 9293.811811 8253.418876 9569.490924 8379.276527 8692.966788 7113.833415 1.273895719 0.702311099 0.553240467 0.474596475 1.306442149 1.16019288 1.345194688 1.177884839 1.221980651 1 12.79641148 S(ph)APASPT(ph)HPGLMSPR ddPTM_HeLa_CUDC101_4h_R1 1 SAPASPTHPGLMSPR 15 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 2 0 S(1)APAS(0.005)PT(0.995)HPGLMSPR 184.87 3.39E-10 149880000 2896.7 1957.7 1920.3 2020.8 2799.1 1999.3 2218.7 2089.8 2594.5 2499.1 TRUE FALSE FALSE 2557.153217 2018.014417 2024.117227 2103.216959 2592.61597 1961.166684 2304.276002 2327.694385 2487.553612 2484.235242 1.029352283 0.81232823 0.814784845 0.846625522 1.043627401 0.789444836 0.927559501 0.936986299 1.001335771 1 11.27858608 -7.276871701 24.69242532 1.013860805 0.882158154 0.40483315 0.071415982 466.6436713 746649.5885 0.01190404 0.013640355 5.29E-08 7.276871701 -0.131702651 GSSGS(ph)PAHAESYSSGGGGQQK ddPTM_HeLa_CUDC101_4h_R1 2 GSSGSPAHAESYSSGGGGQQK 21 0 P15408 P15408 FOSL2 Fos-related antigen 2 1 0 GS(0.007)S(0.024)GS(0.758)PAHAES(0.165)Y(0.03)S(0.012)S(0.004)GGGGQQK;GS(0.054)S(0.199)GS(0.746)PAHAESYSSGGGGQQK ; 115.83 5.50E-06 11864100 4640.37 1671.72 1231.9 1130.2 3908.67 2491.29 2239.7 3668.11 4614.62 4276.17 TRUE FALSE FALSE 4096.432863 1723.223712 1298.50024 1176.294441 3620.335201 2443.772794 2326.085979 4085.672815 4424.40341 4250.735151 0.963699858 0.405394279 0.305476628 0.276727295 0.851696253 0.574905918 0.547219692 0.96116852 1.040856053 1 12.05349666 -7.276758186 22.76669071 0.982858335 0.550915076 0.49215788 0.204935682 152.4122633 226513.2902 0.035230867 0.040393748 5.29E-08 7.276758186 -0.431943259 HKLDVTSVEDYK ddPTM_HeLa_CUDC101_4h_R1 1 HKLDVTSVEDYK 12 1 E7ENZ3;B7ZAR1;E9PCA1;P48643-2;P48643 E7ENZ3 CCT5 T-complex protein 1 subunit epsilon 0 0 79.659 0.020319 11416000 5729.8 4735.8 4966.9 5317.9 5753.4 5571.9 5084 5441.8 6643.6 6050 FALSE FALSE TRUE 5058.16153 4881.704385 5235.425638 5534.786948 5328.983144 5465.625291 5280.091583 6061.272515 6369.747996 6014.014331 0.841062434 0.811721442 0.870537606 0.920314892 0.886094188 0.90881481 0.877964583 1.00785801 1.059150784 1 12.55411259 -9.434694331 1.198490494 0.999214123 0.884008936 0.491208902 0.053804698 0.364791808 0.947072868 0.034034628 0.008765785 3.68E-10 9.434694331 -0.115205188 DSSSSLTDPQVSYVKS(ph)PAAER ddPTM_HeLa_CUDC101_4h_R1 2 DSSSSLTDPQVSYVKSPAAER 21 1 H7C3M7;O94887-3;O94887-2;O94887 H7C3M7;O94887-3 FARP2 "FERM, RhoGEF and pleckstrin domain-containing protein 2" 1 0 DSSSSLTDPQVS(0.004)Y(0.019)VKS(0.977)PAAER;DSSSSLTDPQVS(0.001)Y(0.001)VKS(0.999)PAAER ; 148.58 3.56E-07 303850000 8878.8 6680.8 6934.6 6996.7 7561.5 7253.3 6524.1 7054.6 6380.5 7877.4 TRUE FALSE FALSE 7838.040523 6886.627529 7309.505452 7282.055668 7003.70321 7114.955387 6775.736722 7857.667148 6117.493089 7830.544874 1.000957232 0.879457003 0.933460643 0.929955167 0.894408157 0.90861562 0.865295689 1.003463651 0.781234663 1 12.93489698 -7.27648048 24.53440457 1.000452031 0.914450119 0 0.077883456 302.0067272 492619.5251 0.005474304 0.006274292 5.29E-08 7.27648048 -0.086001912 LSKS(ph)QGGEEEGPLSDK ddPTM_HeLa_CUDC101_4h_R1 1 LSKSQGGEEEGPLSDK 16 1 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 0 LS(0.039)KS(0.961)QGGEEEGPLSDK 194.27 1.87E-15 13547000 1755 1816.8 1768.2 1975.9 2443.9 1607.4 1374.4 1298.2 1953.4 1535.2 TRUE FALSE FALSE 1549.28156 1872.773455 1863.794241 2056.485743 2263.618366 1576.741523 1427.411068 1445.98184 1872.880025 1526.068562 1.01521098 1.22718828 1.221304394 1.347571003 1.483300569 1.033204905 0.93535186 0.947520889 1.227258114 1 10.57560406 -7.276423178 20.60785484 1.007182871 1.177194532 0.001414579 0.175412127 105.5733991 145198.756 0.029990507 0.034423674 5.29E-08 7.276423178 0.170011661 LGLHVTPSNVDQVST(ph)PPAAK ddPTM_HeLa_CUDC101_4h_R1 1 LGLHVTPSNVDQVSTPPAAK 20 0 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 LGLHVTPSNVDQVS(0.483)T(0.516)PPAAK 69.422 0.012867 13210000 1585.3 710.7 610.1 872.12 1271 1321.3 845.56 585.86 954.88 1431.1 TRUE FALSE FALSE 1399.473537 732.5958246 643.0838515 907.6888232 1177.240862 1296.098404 878.1735324 652.5519343 915.5194422 1422.587754 0.983751993 0.514974084 0.452052149 0.638054715 0.827534793 0.911085028 0.617307108 0.458707684 0.643559204 1 10.47430193 -7.276382463 23.87319541 0.992327358 0.642506948 0.210061141 0.177515019 243.8177961 389524.4828 0.025655614 0.029410242 5.29E-08 7.276382463 -0.34982041 DPTQKPSPHPVKPLSAAPVEGS(ph)PDRK ddPTM_HeLa_CUDC101_4h_R1 1 DPTQKPSPHPVKPLSAAPVEGSPDRK 26 3 Q9BXF6 Q9BXF6 RAB11FIP5 Rab11 family-interacting protein 5 1 0 DPTQKPSPHPVKPLS(0.014)AAPVEGS(0.986)PDRK 42.536 0.02578 45294000 2891.3 1440.8 1531.1 1424.1 2233.1 2309.8 1962.9 1739.9 2170.3 2299.9 TRUE FALSE FALSE 2552.386197 1485.18934 1613.875897 1482.180953 2068.368662 2265.744413 2038.609711 1937.963183 2080.839315 2286.220093 1.116421908 0.64962658 0.705914493 0.648310702 0.904711086 0.991043872 0.891694425 0.847671311 0.910165789 1 11.15874858 -7.276308064 24.99339815 1.054977016 0.809945842 0.363937154 0.11844913 520.0401122 874155.4876 0.021156954 0.0242462 5.29E-08 7.276308064 -0.245031174 NSASAT(ph)TPLSGNSSR ddPTM_HeLa_CUDC101_4h_R1 1 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 NSAS(0.001)AT(0.891)T(0.109)PLSGNSSR 160.63 0.00029581 24774000 4664.9 3692.3 3736 4077.1 4208.8 4347.5 3194.1 1321.5 4291.5 4319.7 TRUE FALSE FALSE 4118.087494 3806.055387 3937.979461 4243.381761 3898.325209 4264.578681 3317.297507 1471.934218 4114.602554 4294.006232 0.95903156 0.886364663 0.917087505 0.988210434 0.907852713 0.993146831 0.772541382 0.342788095 0.958219977 1 12.06810857 -4.293655494 2.14985051 0.96552678 0.199468863 0.954374645 0.04013498 0.090853863 0.491930153 0.006187143 0.129786643 5.09E-05 4.293655494 -0.766057917 down S(ph)SSVGSS(ph)SSYPISPAVSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 S(0.913)S(0.064)S(0.301)VGS(0.19)S(0.357)S(0.073)S(0.102)Y(0.001)PISPAVSR 145.17 0.00080565 198240000 2512.1 1812.9 1913.2 1810.2 2041.3 2040.4 1797.5 2006.2 2090.2 2251.7 TRUE FALSE FALSE 2217.635446 1868.7533 2016.633379 1884.02778 1890.717366 2001.48277 1866.830177 2234.577699 2004.041071 2238.306788 0.990764741 0.834895962 0.900963795 0.841720085 0.844708766 0.894195014 0.834036776 0.998333969 0.895337977 1 11.12819207 -7.2761335 23.52217536 0.995638918 0.875468755 0.262043592 0.056256108 164.3355744 263065.8172 0.00718669 0.0082404 5.30E-08 7.2761335 -0.120170163 VT(ph)T(ph)GVS(ph)SIASEDS(ph)RK ddPTM_HeLa_CUDC101_4h_R1 1 VTTGVSSIASEDSRK 15 1 F8VNQ3;G3V106;Q9NT68-2;Q9NT68 F8VNQ3 TENM2 "Teneurin-2;Ten-2, soluble form;Ten-2 intracellular domain" 4 0 VT(0.982)T(0.956)GVS(0.354)S(0.354)IAS(0.354)EDS(1)RK 62.861 0.025627 14887000 2619 1802.5 1923.9 2235.7 2070.2 1604.6 2082.3 1826 2507.2 2309.8 TRUE FALSE FALSE 2312.00479 1858.032889 2027.911853 2326.88151 1917.48547 1573.994928 2162.615009 2033.864459 2403.852155 2296.061207 1.006943884 0.809226201 0.883213325 1.013423119 0.835119493 0.685519586 0.941880383 0.885805854 1.046946025 1 11.16494539 -7.276068982 24.38605219 1.003279064 0.866219993 0.420659141 0.081770897 439.4924094 732587.2288 0.013871564 0.015901939 5.30E-08 7.276068982 -0.137059071 AQS(ph)TDS(ph)LGTSGSLQSK ddPTM_HeLa_CUDC101_4h_R1 1 AQSTDSLGTSGSLQSK 16 0 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 2 0 AQS(0.977)T(0.023)DS(0.995)LGT(0.002)S(0.003)GSLQSK 134.4 0.004053 12530000 3861.8 2597 2796.7 2937 3097.1 2645.4 2841.2 2856.8 3133.7 3381.6 TRUE FALSE FALSE 3409.125658 2677.010492 2947.898062 3056.783555 2868.633103 2594.943403 2950.786036 3182.006564 3004.52756 3361.486093 1.014172174 0.796377084 0.876962742 0.909354812 0.85338241 0.771963153 0.877821878 0.946607089 0.893809308 1 11.71488347 -7.275983272 24.7725453 1.006692421 0.861034328 0.363370288 0.059337362 295.4252114 503195.347 0.008067102 0.009247317 5.30E-08 7.275983272 -0.145658093 HLEFSHDQYR ddPTM_HeLa_CUDC101_4h_R1 1 HLEFSHDQYR 10 0 Q9NR45 Q9NR45 NANS Sialic acid synthase 0 0 167.12 7.40E-06 18119000 2085.7 1130.6 1172.7 1040.4 1550 1236.9 1015.4 1121.4 944.33 789.04 FALSE FALSE TRUE 1841.217408 1165.432446 1236.099709 1082.832009 1435.659588 1213.308193 1054.564318 1249.055643 905.4043177 784.346755 2.347453337 1.485863795 1.575960761 1.380552673 1.830388892 1.546902802 1.344512885 1.592478882 1.154341893 1 9.615347792 -4.999250349 23.65168148 1.627631984 1.46279886 0 0.359416661 58.04408543 1830649 0.069127445 0.204468038 1.00E-05 4.999250349 -0.164833124 HLEINPDHPIVETLR ddPTM_HeLa_CUDC101_4h_R1 4 HLEINPDHPIVETLR 15 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;; ;;; 170.74 5.37E-07 259411000 12408.3 10804.3 10090.5 9825.7 10061.8 9891.6 10168.3 10252.1 10392.1 11291.5 FALSE FALSE TRUE 10953.81788 11137.16768 10636.02295 10226.43452 9319.56106 9702.934211 10560.49474 11419.15762 9963.733239 11224.33766 0.975898821 0.992233842 0.947585798 0.911094697 0.830299421 0.864454947 0.940856829 1.017356923 0.887690084 1 13.45434269 -6.516084916 2.77272132 0.988603116 0.907398798 0.095234152 0.056166065 0.218604989 3.396053337 0.007777895 0.01186441 3.05E-07 6.516084916 -0.081204318 HLEINPDHSIIETLR ddPTM_HeLa_CUDC101_4h_R1 3 HLEINPDHSIIETLR 15 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ;; ;; 135.14 0.00042321 105310000 5101.7 3853.54 4118.1 3925.3 4712.5 4203.4 4106.7 4269.7 4354.7 4963.2 FALSE FALSE TRUE 4503.68646 3972.263 4340.736943 4085.390701 4364.868264 4123.227148 4265.096795 4755.745389 4175.197423 4933.678666 0.912845519 0.805132087 0.879817523 0.828061772 0.884708665 0.835730786 0.864486134 0.963934969 0.846264564 1 12.26844804 -8.224445441 0.884773408 0.987667979 0.865350989 0 0.061505687 0.253672452 0.421664433 0.014136224 0.009297124 5.96E-09 8.224445441 -0.122316989 HLEPEPEEEIIAEDYDDDPVDYEATR ddPTM_HeLa_CUDC101_4h_R1 4 HLEPEPEEEIIAEDYDDDPVDYEATR 26 0 O60828-5;O60828-4;O60828-2;O60828;A0A5H1ZRR1;O60828-10;O60828-9;O60828-8;O60828-7;O60828-6;O60828-3 O60828-5 PQBP1 Polyglutamine-binding protein 1 0 0 ;;; ;;; 176.34 1.07E-13 72237200 8516.7 7893.8 7323.3 6853.4 7737.9 7381.7 7076.2 6824.8 7919.9 7344.4 FALSE FALSE TRUE 7518.385336 8136.998622 7719.21975 7132.911275 7167.090533 7240.906371 7349.131404 7601.707645 7593.43837 7300.715182 1.029814908 1.114548153 1.057323777 0.977015415 0.981697047 0.991807815 1.006631709 1.041227805 1.040095139 1 12.83382208 -6.249503975 24.91598544 1.026518916 0.998626443 0.223563207 0.03503657 1340.990716 2799416.789 0.006062435 0.009992311 5.63E-07 6.249503975 -0.027892473 RMEDEGGFPVPQENGQPES(ph)PRR ddPTM_HeLa_CUDC101_4h_R1 2 RMEDEGGFPVPQENGQPESPRR 22 2 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RMEDEGGFPVPQENGQPES(1)PRR;RMEDEGGFPVPQENGQPES(1)PRR ; 77.899 0.00065977 12538100 2901.3 2221.97 2237.23 2363.46 2558.5 2158.88 2036.21 2602.5 2700.9 2591.57 TRUE FALSE FALSE 2561.214012 2290.426262 2358.181421 2459.852115 2369.764552 2117.702961 2114.747302 2898.75808 2589.567759 2576.155226 0.994200189 0.889087054 0.915387938 0.954853997 0.919884224 0.822040124 0.82089281 1.125226481 1.005206415 1 11.33100381 -7.275527444 22.02571138 0.997261219 0.91442989 0.165310717 0.080067029 191.7097548 299723.9726 0.012878417 0.014779341 5.30E-08 7.275527444 -0.082831329 HGGS(ph)PQPLATTPLSQEPVNPPS(ph)EAS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 HGGS(0.993)PQPLAT(0.007)T(0.007)PLS(0.012)QEPVNPPS(0.923)EAS(0.747)PT(0.312)R 68.206 0.00011107 11016000 535.91 401.3 418.11 445.92 365.96 377.66 502.57 454.99 424.43 454.53 TRUE FALSE FALSE 473.0914422 413.6635773 440.7142913 464.106545 338.9638599 370.4567647 521.9542932 506.7842225 406.9348158 451.8264353 1.047064548 0.915536465 0.975406167 1.027178821 0.750208118 0.819909451 1.155209727 1.121634731 0.900644106 1 8.819624872 -7.275407544 24.05682593 1.022224924 0.962429333 0 0.122602239 1264.290713 2177433.07 0.02091795 0.023991535 5.30E-08 7.275407544 -0.059795591 HLGVCISVANNR ddPTM_HeLa_CUDC101_4h_R1 2 HLGVCISVANNR 12 0 O43390;B4DT28;O43390-4;O43390-3;O43390-2 O43390 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 0 ; ; 89.561 0.014609 2791400 1728.03 1545.8 1235.55 1177.84 1498.21 1603.44 1290.9 1572.16 1201.88 806.42 FALSE FALSE TRUE 1525.472943 1593.424266 1302.34757 1225.877406 1387.690033 1572.857054 1340.690445 1751.12834 1152.337998 801.623378 1.90297961 1.987746752 1.624637712 1.529243582 1.731099755 1.9620898 1.672469245 2.184477633 1.437505479 1 9.646780773 -9.254565798 0.809279919 0.956111785 1.815990839 0.495602336 0.227130567 0.296974432 0.321721126 0.164776622 0.037246719 5.56E-10 9.254565798 0.859879053 HLIVLINK ddPTM_HeLa_CUDC101_4h_R1 1 HLIVLINK 8 0 H3BR35;P15170;P15170-2;P15170-3;Q8IYD1 H3BR35 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B 0 0 124.89 3.24E-05 0 7762.8 5785.4 4045.6 6400 5672.6 5617.8 5222.8 4395.8 4190.9 2507.7 FALSE FALSE TRUE 6852.856352 5963.641317 4264.317373 6661.019663 5254.143599 5510.649825 5424.245146 4896.200104 4018.149328 2492.784089 2.74907738 2.392361755 1.710664551 2.672120579 2.107741149 2.210640645 2.175978726 1.964149292 1.611912298 1 11.28354221 -9.43894301 1.14378686 0.992752217 2.287230376 0.522255135 0.342401826 0.215551094 0.499904781 0.222965422 0.054464147 3.64E-10 9.43894301 1.294478159 HLLGAEHGDEPR ddPTM_HeLa_CUDC101_4h_R1 2 HLLGAEHGDEPR 12 0 U3KQC1;K7EIR0;A0A0A0MQU0;Q9BV38 U3KQC1 WDR18 WD repeat-containing protein 18 0 0 ; ; 151.79 0.00037577 12870000 2158.7 1920.09 1712.99 1621.34 2029.92 1741.81 1670.99 1840.83 1721.31 2101.25 FALSE FALSE TRUE 1905.660458 1979.245697 1805.599421 1687.465253 1880.176846 1708.587876 1735.440644 2050.382646 1650.356873 2088.751672 0.912344193 0.947573483 0.864439486 0.80788218 0.90014379 0.817994738 0.830850631 0.981630643 0.790116363 1 11.02842527 -8.152365531 0.484040441 1.000815621 0.862832088 0 0.081677016 0.585438552 0.318157545 0.034159965 0.017784417 7.04E-09 8.152365531 -0.137983533 HLLIGVSSDR ddPTM_HeLa_CUDC101_4h_R1 1 HLLIGVSSDR 10 0 P36542-2;P36542 P36542-2 ATP5C1 "ATP synthase subunit gamma, mitochondrial" 0 0 90.108 0.01387 2425000 1659.6 1042.9 840.13 849.25 1482.7 1392.5 1451.7 1035.2 1183.4 1203.7 FALSE FALSE TRUE 1465.064204 1075.030513 885.5499691 883.8860858 1373.324175 1365.940383 1507.692555 1153.042984 1134.619751 1196.540339 1.224416893 0.898449035 0.740092031 0.738701452 1.147745822 1.141574871 1.260043232 0.963647398 0.948250313 1 10.22465332 -7.25280315 24.84772924 1.105974645 0.988419964 0.013281336 0.174783029 1260.592504 3626913.984 0.032384514 0.039346308 5.59E-08 7.25280315 -0.11755468 LLDESES(ph)AASSR ddPTM_HeLa_CUDC101_4h_R1 1 LLDESESAASSR 12 0 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12;Q8N108-19;Q8N108-16;Q8N108-14;Q8N108-18;Q8N108-15 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 LLDES(0.093)ES(0.907)AASSR 161.87 9.83E-05 7140500 1119.2 620.84 735.98 704.85 786.94 754.2 699.11 766.67 1114.8 963.99 TRUE FALSE FALSE 988.0090726 639.9673445 775.769305 733.5968296 728.889004 739.8148916 726.0749069 853.9446138 1068.847472 958.2561446 1.031049034 0.667845803 0.809563611 0.765554005 0.760641096 0.77204294 0.75770441 0.891144418 1.115408942 1 9.904267534 -7.275189939 24.99798495 1.014662052 0.774576728 0.804616065 0.061158615 203.8663944 370620.4386 0.008288058 0.00950342 5.31E-08 7.275189939 -0.240085324 AS(ph)GQAFELILS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 2 0 AS(1)GQAFELILS(1)PR;AS(1)GQAFELILS(1)PR;AS(1)GQAFELILS(1)PR ;; 189.77 2.35E-10 33222000 11363.2 9721.8 8559.2 9218 10632.6 9351.3 7248.4 2288.86 11107.5 11393 TRUE FALSE FALSE 10031.22292 10021.31713 9021.936242 9593.949884 9848.254281 9172.939533 7527.973216 2549.414571 10649.64415 11325.23393 0.885740902 0.884866237 0.796622507 0.847130394 0.869585065 0.809955855 0.664707967 0.22510922 0.940346505 1 13.46725323 -4.292647054 1.302019221 0.917981208 1.44E-27 0.92164881 0.058020435 0.307132687 0.459186202 0.011071566 0.367738573 5.10E-05 4.292647054 -0.917981208 down QSHSGSIS(ph)PYPK ddPTM_HeLa_CUDC101_4h_R1 4 QSHSGSISPYPK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK ;;; 133.87 0.00092459 1683770000 65998 42177.9 42080.2 39927.8 57296 51168 49997.5 48980.6 55488 54825 TRUE FALSE FALSE 58261.81449 43477.35111 44355.1829 41556.22827 53069.38823 50192.05565 51925.92032 54556.35352 53200.76115 54498.89846 1.069045726 0.797765686 0.813873017 0.762515013 0.973769924 0.920973764 0.952788438 1.001054243 0.976180485 1 15.73393945 -7.275082511 24.98854489 1.032604929 0.888159245 0.349727748 0.077703827 570.9219323 1045689.575 0.014071243 0.016136248 5.31E-08 7.275082511 -0.144445684 VDDS(ph)SEDKTEFTVK ddPTM_HeLa_CUDC101_4h_R1 1 VDDSSEDKTEFTVK 14 1 P49588;P49588-2 P49588 AARS "Alanine--tRNA ligase, cytoplasmic" 1 0 VDDS(0.711)S(0.289)EDKTEFTVK 146 0.0017436 11201000 1956.8 1508.7 1352.9 1855.9 1442.8 1840.7 1299.6 1698.4 1791.3 1715.1 TRUE FALSE FALSE 1727.42687 1555.181259 1426.041866 1931.591624 1336.367518 1805.591714 1349.726007 1891.738991 1717.461856 1704.898509 1.013213902 0.912184069 0.836437981 1.132965754 0.783839924 1.059061114 0.791675282 1.109590384 1.007368971 1 10.73547014 -7.275015197 23.1408269 1.006239902 0.941586292 0.051339931 0.117481294 594.4765734 1013320.114 0.017468424 0.020047609 5.31E-08 7.275015197 -0.06465361 EAPS(ph)PTCPDLGAK ddPTM_HeLa_CUDC101_4h_R1 2 EAPSPTCPDLGAK 13 0 O00257 O00257 CBX4 E3 SUMO-protein ligase CBX4 1 0 EAPS(0.995)PT(0.005)CPDLGAK;EAPS(0.962)PT(0.038)CPDLGAK ; 195.94 2.02E-16 75892000 8594.6 8201.2 8716.6 8972.4 9672.9 8552.4 8488.3 6900.7 6627.5 7210.6 TRUE FALSE FALSE 7587.154017 8453.869251 9187.845762 9338.333254 8959.349438 8389.277219 8815.696574 7686.247794 6354.311645 7167.711031 1.058518401 1.179437789 1.281838194 1.302833389 1.249959631 1.170426261 1.229917966 1.072343425 0.886518948 1 12.80729676 -7.274850056 2.498503451 1.023947238 1.22241668 0.659492583 0.074787182 0.12362741 1.475272307 0.01130346 0.013325565 5.31E-08 7.274850056 0.198469442 HLQDLSGR ddPTM_HeLa_CUDC101_4h_R1 1 HLQDLSGR 8 0 P30533 P30533 LRPAP1 Alpha-2-macroglobulin receptor-associated protein 0 0 93.143 0.001574 0 721.15 512.5 486.18 597.04 610.35 523.44 527.53 802.5 623.34 657.67 FALSE FALSE TRUE 636.6178902 528.2895175 512.4643614 621.3898718 565.3256965 513.4562541 547.8770088 893.8533562 597.6456614 653.7581496 0.973781957 0.808080967 0.783874529 0.950488911 0.86473216 0.785391745 0.838042339 1.367253864 0.914169348 1 9.352613216 -7.485251268 18.65732443 0.988434104 0.899927773 0.006749587 0.16330657 52.68618043 26125.80955 0.026534726 0.029702866 3.27E-08 7.485251268 -0.08850633 HLQLAIR ddPTM_HeLa_CUDC101_4h_R1 2 HLQLAIR 7 0 P0C0S5;A0A494C189;Q71UI9-4;P16104;Q71UI9;C9J0D1;Q71UI9-3;Q71UI9-2;C9J386;A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;A0A3B3IS11;Q9BTM1;Q96QV6;Q9BTM1-2;H0YFX9;Q93077;Q7L7L0;P04908 P0C0S5;Q71UI9;A0A0U1RR32;Q93077 H2AFZ;H2AFV;H2AFX;HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ;HIST1H2AA;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A.Z;Histone H2A.V;Histone H2AX;Histone H2A;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E 0 0 ; ; 114.59 0.0031687 22042000 10496.5 3336.9 1420.19 4735.3 3251.1 3630.9 2873 2254.2 1192.05 804.48 FALSE FALSE TRUE 9266.116182 3439.705934 1496.969767 4928.426002 3011.27283 3561.646632 2983.812572 2510.809016 1142.913194 799.6949172 11.58706399 4.301272723 1.871926075 6.162882739 3.765527035 4.453756746 3.731188617 3.139708609 1.429186518 1 9.643305908 -7.026247027 24.9445793 6.101800509 3.902562586 0 2.968438078 1668.503933 1585705.408 0.661659432 0.811897508 9.41E-08 7.026247027 -2.199237923 LTPPS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 1 LTPPSPVR 8 0 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 0 LTPPS(1)PVR 92.239 0.012196 5410900 1699 1189.3 1207.3 1282.8 1758.6 1217 1232.3 1246.8 1217.7 1366 TRUE FALSE FALSE 1499.845796 1225.940923 1272.57029 1335.118129 1628.871582 1193.787753 1279.830224 1388.730672 1167.505891 1357.874971 1.104553679 0.902837853 0.937177809 0.983240841 1.199574052 0.879158816 0.942524349 1.022723521 0.859803675 1 10.40713493 -7.274813876 24.83611091 1.049372568 0.982437981 0 0.105278187 1243.265884 2308709.744 0.015460524 0.017733072 5.31E-08 7.274813876 -0.066934587 SSFFSDRGS(ph)GSR ddPTM_HeLa_CUDC101_4h_R1 4 SSFFSDRGSGSR 12 1 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;F6S8Q4;A0A2R8Y645;O00571;O00571-2;A0A2U3TZJ9;A0A0D9SFB3;A0A0D9SF53;A0A0D9SG12;A0A2R8YF78;A0A2R8YDH3;A0A2R8Y650;A0A2R8YCU0;A0A2R8YF89;A0A087WX09 A0A2R8Y5G6 DDX3X ATP-dependent RNA helicase DDX3X 1 0 SSFFS(0.014)DRGS(0.92)GS(0.066)R;SSFFS(0.008)DRGS(0.926)GS(0.066)R;SSFFS(0.003)DRGS(0.952)GS(0.045)R;SSFFS(0.02)DRGS(0.954)GS(0.027)R ;;; 82.578 0.017517 177700000 8815.7 9232.2 7495.3 10086.2 9689 8900.3 9059 8282 8353.1 7649.4 TRUE FALSE FALSE 7782.33701 9516.633139 7900.51859 10497.55883 8974.261773 8730.541606 9408.408665 9224.789403 8008.781682 7603.901029 1.023466373 1.251546161 1.039008604 1.380549115 1.18021812 1.148166129 1.237313404 1.21316537 1.053246439 1 12.89252404 -7.274759048 20.36681849 1.011081227 1.205198291 0.503794901 0.082183133 33.07510042 50574.1681 0.012774216 0.01468363 5.31E-08 7.274759048 0.194117064 VS(ph)PSDTTPLVSR ddPTM_HeLa_CUDC101_4h_R1 3 VSPSDTTPLVSR 12 0 Q9HCK8-2;Q9HCK8;H0YJG4 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 VS(0.819)PS(0.173)DT(0.004)T(0.004)PLVSR;VS(0.988)PS(0.007)DT(0.001)T(0.004)PLVSR;VS(0.995)PS(0.004)DTTPLVSR ;; 124.48 0.0026142 155219000 2412.94 1588.5 1506.81 1687.1 2259.66 2110.37 1800.76 1444.71 2145.46 1945.31 TRUE FALSE FALSE 2130.098831 1637.439802 1588.272706 1755.90723 2092.969384 2070.118208 1870.215916 1609.169947 2057.023231 1933.73921 1.101544004 0.846773853 0.821347935 0.908037248 1.082343148 1.070526055 0.967150021 0.832154584 1.063754213 1 10.91717753 -7.274758286 24.90972787 1.047951334 0.939784726 0.282122441 0.088801323 884.153757 1653587.993 0.017051456 0.01955622 5.31E-08 7.274758286 -0.108166609 ASEAAS(ph)PLPDSPGDKLVIVK ddPTM_HeLa_CUDC101_4h_R1 1 ASEAASPLPDSPGDKLVIVK 20 1 Q68CZ2;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 AS(0.169)EAAS(0.831)PLPDSPGDKLVIVK 78.976 0.0024311 12123000 922.77 1090.1 860.54 905.43 1179.6 1001.6 997.4 948.38 879.44 930.31 TRUE FALSE FALSE 814.6042994 1123.684689 907.0633954 942.357349 1092.583258 982.4961488 1035.870052 1056.339746 843.189111 924.7764747 0.880866157 1.215087883 0.980846097 1.019010945 1.181456588 1.06241473 1.120130194 1.142264941 0.911776125 1 9.852960888 -7.274472566 24.99338354 0.943742352 1.09721126 0.539220727 0.072494427 494.9309242 949113.3384 0.013080175 0.015008451 5.32E-08 7.274472566 0.153468908 HLTGEFEK ddPTM_HeLa_CUDC101_4h_R1 2 HLTGEFEK 8 0 F5H018;B5MDF5;J3KQE5;P62826;H0YFC6 F5H018 RAN GTP-binding nuclear protein Ran 0 0 ; ; 124.08 0.0061863 27319000 22564.3 12805.2 12078.8 12220.2 18545.9 18025.1 16449.8 15404.1 16688.4 18725.8 FALSE FALSE TRUE 19919.34696 13199.71303 12731.81646 12718.59258 17177.80591 17681.30125 17084.2743 17157.64048 16000.49709 18614.41811 1.070103123 0.709112311 0.683976066 0.683265655 0.92282261 0.949871285 0.917797924 0.921739287 0.859575464 1 14.1841329 -7.276154741 24.87089164 1.033104258 0.827826497 0.22469117 0.113619792 522.6574131 883357.5971 0.019191035 0.021994823 5.29E-08 7.276154741 -0.205277761 SSS(ph)QGPLSSIR ddPTM_HeLa_CUDC101_4h_R1 1 SSSQGPLSSIR 11 0 A0A0U1RQE4 A0A0U1RQE4 1 0 S(0.003)S(0.062)S(0.935)QGPLSSIR 94.547 0.019095 10015000 2107.1 2191.3 1985 1990.9 2453.5 2324.6 1837.9 2071.2 2033.8 1855 TRUE FALSE FALSE 1860.108932 2258.811356 2092.315104 2072.097507 2272.510193 2280.262128 1908.788419 2306.977036 1949.965903 1843.966378 1.008754257 1.224974264 1.134681809 1.123717619 1.23240327 1.236607216 1.035153592 1.251094957 1.057484522 1 10.84859663 -7.274389672 23.83346461 1.004133942 1.172248524 0.538503258 0.064964336 184.9816539 340435.7596 0.009969346 0.011443007 5.32E-08 7.274389672 0.168114582 HLVYESDQNK(ac)DGK ddPTM_HeLa_CUDC101_4h_R1 1 HLVYESDQNKDGK 13 1 O43852;O43852-3;O43852-15;O43852-2;O43852-4;H0Y875;O43852-5;O43852-9 O43852 CALU Calumenin 0 1 HLVYESDQNK(1)DGK 108.32 0.0068341 1629800 1296.5 761.97 706.39 895.18 2028.2 1890.4 1828.4 1565.5 1114.7 943.84 FALSE TRUE FALSE 1144.526235 785.4453925 744.5795801 931.6893097 1878.583727 1854.34377 1898.922 1743.710192 1068.751594 938.2259977 1.21988331 0.837160124 0.793603654 0.993032928 2.002272087 1.97643614 2.023949459 1.858518306 1.139119569 1 9.873791667 -5.760447639 24.99993367 1.051251081 1.970279685 0.928905179 0.130699466 6.03416531 152102.5123 0.023168206 0.044301187 1.74E-06 5.760447639 0.919028604 HLVYESDQNKDGK ddPTM_HeLa_CUDC101_4h_R1 1 HLVYESDQNKDGK 13 1 O43852;O43852-3;O43852-15;O43852-2;O43852-4;H0Y875;O43852-5;O43852-9 O43852 CALU Calumenin 0 0 67.153 0.033472 23875000 5762.8 4711.3 4894.7 5376.1 6168.8 5645.9 5181.9 5124.8 5084 5420.1 FALSE FALSE TRUE 5087.29332 4856.449569 5159.322288 5595.360595 5713.739914 5538.213864 5381.767619 5708.186517 4874.435368 5387.861004 0.944213913 0.901368756 0.957582663 1.038512425 1.060483912 1.027905854 0.998869053 1.059453188 0.904706963 1 12.39549692 -6.258947974 24.51935595 0.96531985 1.035718454 0.623049016 0.034749229 112.5079948 1107251.781 0.005391761 0.008677528 5.51E-07 6.258947974 0.070398604 HLYTLDGGDIINALCFSPNR ddPTM_HeLa_CUDC101_4h_R1 1 HLYTLDGGDIINALCFSPNR 20 0 D6R9L0;D6R9Z1;D6RAC2;P63244;H0YAF8;J3KPE3;D6REE5;D6RF23;H0Y8R5;H0YAM7;H0Y8W2 D6R9L0;D6RAC2 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed" 0 0 196.71 2.71E-17 15933000 1476.1 1295.7 1044.7 1440 1319.4 1567.6 1501.1 1134.3 1009 362.44 FALSE FALSE TRUE 1303.073796 1335.618981 1101.179642 1498.729424 1222.070491 1537.700642 1558.99793 1263.424127 967.4085929 360.2841908 3.616794267 3.707126251 3.056419544 4.159853423 3.391962573 4.268021415 4.327133884 3.506743175 2.685126402 1 8.492991538 -9.417810547 0.417536082 6.37E-14 3.950660142 0.527815805 0.641835404 0.524412881 0.109923849 0.922010169 0.114298799 3.82E-10 9.417810547 3.950660142 AES(ph)MLQQADK ddPTM_HeLa_CUDC101_4h_R1 1 AESMLQQADK 10 0 P13797;P13797-3;A0A0A0MSQ0;P13797-2;H7C4N2 P13797 PLS3 Plastin-3 1 0 AES(1)MLQQADK 99.161 0.017164 6802300 1910.9 1362 1381.5 1553.5 1455.8 1476.5 1324.9 1869.5 1782.1 1539.2 TRUE FALSE FALSE 1686.907199 1403.961606 1456.188069 1616.858445 1348.408534 1448.338223 1376.001837 2082.316323 1708.641084 1530.04477 1.102521463 0.917595114 0.951729059 1.056739304 0.88128698 0.94659859 0.89932129 1.360951238 1.116726201 1 10.57935815 -7.274216273 24.62115594 1.048412909 0.99147461 0.042440087 0.134311582 1783.1557 3436145.151 0.021639524 0.024831944 5.32E-08 7.274216273 -0.056938299 S(ph)YEDLTESEDGAASGDSHK ddPTM_HeLa_CUDC101_4h_R1 2 SYEDLTESEDGAASGDSHK 19 0 A0A0A0MSQ9;Q86VX9-5;Q86VX9 A0A0A0MSQ9 MON1A Vacuolar fusion protein MON1 homolog A 1 0 S(1)YEDLTESEDGAASGDSHK;S(0.994)YEDLT(0.006)ESEDGAASGDSHK ; 301.03 4.67E-124 47741000 8145.3 4578.9 4438.1 4921.4 6509.9 6570.1 5754.6 5092.9 6106.1 6493.1 TRUE FALSE FALSE 7190.520281 4719.970482 4678.037111 5122.115964 6029.677647 6444.786289 5976.55685 5672.65515 5854.403974 6454.478752 1.114035782 0.731270589 0.724773803 0.793575463 0.934185064 0.998498335 0.925954996 0.878871148 0.907029707 1 12.65608488 -7.274082167 24.93511303 1.053850232 0.8591683 0.301096279 0.09833087 495.6476278 977553.7788 0.017344953 0.019904044 5.32E-08 7.274082167 -0.194681932 HMEDYHTDR ddPTM_HeLa_CUDC101_4h_R1 2 HMEDYHTDR 9 0 B1ALK7;A0A2R8YG42;Q14155-6;Q14155-1;Q14155-5;Q14155-2;Q14155-3;Q14155;E9PDQ5;E7EUY6 B1ALK7 ARHGEF7 Rho guanine nucleotide exchange factor 7 0 0 ; ; 83.998 0.015405 1388190 0 0 278.86 65.495 51.706 0 129.04 0 125.01 114.33 FALSE FALSE TRUE 0 0 293.9360151 68.16616919 47.89175139 0 134.017116 0 119.8570349 113.6499601 0 0 2.586327482 0.599790525 0.421396993 0 1.17920953 0 1.054615724 1 6.828453367 -5.799142062 6.88567366 0.649324597 0.427124709 0.038697117 0.762541788 0.903843721 120.3877755 0.11840832 0.218291693 1.59E-06 5.799142062 -0.222199887 HMGIGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 HMGIGKR 7 1 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 1 ; HMGIGK(1)R;HMGIGK(1)R 90.986 0.0091169 8294300 127.628 362.28 365.63 425.14 403.49 482.43 362.72 338.82 128.33 57.956 FALSE TRUE FALSE 112.6676393 373.4414174 385.3970638 442.4790468 373.7253466 473.2284515 376.7102319 377.3898992 123.0401831 57.61127513 1.955652588 6.482089079 6.689611762 7.680424462 6.48701744 8.214163815 6.538828225 6.550625695 2.13569623 1 5.848279285 -7.262629185 2.985921327 1.388570335 7.056953481 0.943063677 0.592359622 0.035534771 0.627552546 0.100559309 0.11903644 5.46E-08 7.262629185 5.668383146 HMQEWLETR ddPTM_HeLa_CUDC101_4h_R1 1 HMQEWLETR 9 0 G3V2U7;P07311 G3V2U7 ACYP1 Acylphosphatase;Acylphosphatase-1 0 0 109.79 0.0006943 0 1773.1 1317.5 1574.7 1388.3 1689.7 1589 1461.5 1612.7 2008.8 2026.6 FALSE FALSE TRUE 1565.259906 1358.090613 1659.833045 1444.920875 1565.054197 1558.692472 1517.870545 1796.283249 1925.996414 2014.545693 0.776979103 0.674142373 0.823924248 0.717244032 0.776876992 0.773719096 0.753455506 0.891656742 0.956045038 1 10.97623881 -9.011131862 0.785313215 1.002377747 0.769839099 0.670388254 0.056793888 0.269346917 0.300579833 0.03692031 0.011027775 9.75E-10 9.011131862 -0.232538648 HNDDEQYAWESSAGGSFTVR ddPTM_HeLa_CUDC101_4h_R1 3 HNDDEQYAWESSAGGSFTVR 20 0 P07900;P07900-2;Q14568;P08238 P07900;P08238 HSP90AA1;HSP90AA2P;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta 0 0 ;; ;; 123.83 2.06E-05 41780400 2739.13 2596.6 2751.1 2303.92 3086.51 2533.9 2401.75 2720.13 2998.14 2593.08 FALSE FALSE TRUE 2418.053334 2676.598168 2899.832788 2397.883816 2858.824306 2485.570079 2494.386302 3029.778604 2874.5554 2577.656245 0.938082158 1.038384452 1.124988172 0.930257408 1.10907896 0.964275234 0.967695482 1.175400564 1.115181827 1 11.33184416 -7.240378867 22.18979782 0.970761023 1.039482183 0 0.087263773 253.8811695 267493.8307 0.011716834 0.014337181 5.75E-08 7.240378867 0.068721159 HNGPNDASDGTVR ddPTM_HeLa_CUDC101_4h_R1 1 HNGPNDASDGTVR 13 0 P31942;P31942-2 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 0 0 137.81 0.00076812 4547800 1697.2 1253.3 1925.9 1725.7 2006.7 1852.8 1566 1152.3 2062.1 2161.7 FALSE FALSE TRUE 1498.256789 1291.912687 2030.01998 1796.081505 1858.669739 1817.460927 1626.401145 1283.473174 1977.099365 2148.842112 0.697239123 0.601213407 0.944704112 0.835836889 0.864963381 0.845786164 0.756873265 0.597285937 0.92007661 1 11.06934377 -9.395462453 1.130403333 0.99954294 0.769951617 0.325028425 0.108862388 0.422481054 0.968747643 0.075573323 0.019461128 4.02E-10 9.395462453 -0.229591324 HAVS(ph)DPSILDSLDLNEDER ddPTM_HeLa_CUDC101_4h_R1 1 HAVSDPSILDSLDLNEDER 19 0 P05198;H0YJS4;G3V4T5 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 1 0 HAVS(0.97)DPS(0.03)ILDSLDLNEDER 79.455 0.0013171 0 557.39 395.91 509.96 339.81 401.86 498.07 445.72 427.03 625.8 443.74 TRUE FALSE FALSE 492.0535891 408.1075178 537.5299801 353.6689206 372.2155884 488.5701446 462.9115697 475.6413691 600.0042591 441.1006147 1.11551327 0.925202786 1.218610816 0.801787413 0.843833756 1.107616104 1.049446666 1.07830584 1.360243534 1 8.784963961 -7.274075459 24.6698303 1.054547928 1.003680954 0.070542996 0.154036926 1996.935905 3898680.132 0.020923098 0.02401039 5.32E-08 7.274075459 -0.050866974 RPPGPTT(ph)SPASTSLSSPGQR ddPTM_HeLa_CUDC101_4h_R1 1 RPPGPTTSPASTSLSSPGQR 20 1 Q01970-2;Q01970 Q01970-2 PLCB3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3" 1 0 RPPGPT(0.065)T(0.741)S(0.184)PAS(0.007)T(0.002)S(0.001)LSSPGQR 66.401 0.0021294 0 1594.7 949.91 1192.8 1056.9 1056.6 1107.6 1318.8 874.48 1092.3 1309.7 TRUE FALSE FALSE 1407.771683 979.1756012 1257.286376 1100.00495 978.656723 1086.474375 1369.666558 974.0272684 1047.274932 1301.909846 1.081312725 0.752107071 0.965724608 0.844916377 0.75170852 0.834523511 1.052044089 0.748152625 0.804414326 1 10.34641383 -7.274000595 24.93833938 1.038397678 0.857555672 0.055584137 0.119403876 482.7774726 958477.7221 0.015568755 0.017868268 5.32E-08 7.274000595 -0.180842007 HNIVFGDYTWTEFDEPFLTR ddPTM_HeLa_CUDC101_4h_R1 2 HNIVFGDYTWTEFDEPFLTR 20 0 H0YAL2;Q15645-2;Q15645 H0YAL2 TRIP13 Pachytene checkpoint protein 2 homolog 0 0 ; ; 128.05 1.77E-05 28281000 3124.2 2548.5 2644.8 2301 3109.2 2710.1 2770.7 2633.5 2925.3 2606.1 FALSE FALSE TRUE 2757.986012 2627.016264 2787.785888 2394.844726 2879.84051 2658.409358 2877.566827 2933.286995 2804.717896 2590.598801 1.064613328 1.014057546 1.076116412 0.924436746 1.111650522 1.02617563 1.110772855 1.132281461 1.082652356 1 11.33906989 -4.584853888 1.231778142 1.029035615 1.155897883 0.293197539 0.050561143 0.720051577 1.337291973 0.006875097 0.099569576 2.60E-05 4.584853888 0.126862267 HNMSGGEFQGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 4 HNMSGGEFQGKR 12 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 0 1 ;;; HNMSGGEFQGK(1)R;HNMSGGEFQGK(1)R;HNMSGGEFQGK(1)R;HNMSGGEFQGK(1)R 135.94 0.0002869 4554480 1626.07 1148.59 1205.44 1450.36 1461.56 1231.597 1573.39 1943.69 1201.96 1284.56 FALSE TRUE FALSE 1435.46454 1183.976696 1270.609733 1509.51195 1353.743631 1208.106339 1634.076179 2164.951813 1152.4147 1276.91938 1.124162231 0.92721335 0.995058696 1.182151335 1.060163744 0.946110113 1.279701918 1.695449099 0.902496053 1 10.31845173 -4.372095302 2.69994152 1.049068712 1.747516131 0.842493241 0.089455866 0.093112774 1.021853729 0.011333882 0.127538236 4.25E-05 4.372095302 0.698447419 TAS(ph)ELLLDR ddPTM_HeLa_CUDC101_4h_R1 2 TASELLLDR 9 0 Q92508 Q92508 PIEZO1 Piezo-type mechanosensitive ion channel component 1 1 0 T(0.206)AS(0.794)ELLLDR;T(0.299)AS(0.701)ELLLDR ; 117.14 0.0011716 1497500 2875.2 1779.48 2102 2274.2 1890.53 2097.49 1855.07 1699.08 1763.74 2538.2 TRUE FALSE FALSE 2538.173415 1834.30367 2215.640478 2366.951706 1751.069368 2057.483873 1926.620671 1892.496399 1691.037891 2523.102674 1.005973099 0.727003181 0.878141227 0.938111529 0.694014313 0.815457847 0.763591863 0.750067137 0.670221592 1 11.3009832 -7.273990967 24.61576184 1.002820638 0.79955685 0 0.125064681 261.8607535 513551.696 0.01138088 0.0130639 5.32E-08 7.273990967 -0.203263788 ASVS(ph)GPNSPS(ph)ETR ddPTM_HeLa_CUDC101_4h_R1 1 ASVSGPNSPSETR 13 0 A0A087X0X0;C9J453;A0A087X255;O15344-2;O15344 A0A087X0X0 MID1 E3 ubiquitin-protein ligase Midline-1 2 0 AS(0.066)VS(0.933)GPNS(0.365)PS(0.556)ET(0.08)R 111.81 0.04001 13083000 2887.7 1674.3 2029.4 1835.2 2293.7 1839.9 2027.2 1673.2 2324.7 2453 TRUE FALSE FALSE 2549.208183 1725.883198 2139.115503 1910.047388 2124.498321 1804.806973 2105.389783 1863.670325 2228.874882 2438.409447 1.045438938 0.707790564 0.877258536 0.783316924 0.87126398 0.740157472 0.863427504 0.764297533 0.914069163 1 11.25172468 -7.273944524 24.98685601 1.021457282 0.80607546 0.62259547 0.064375487 222.8861462 445353.7018 0.008432986 0.009679243 5.32E-08 7.273944524 -0.215381822 ALPNNTSS(ph)SPQPK ddPTM_HeLa_CUDC101_4h_R1 2 ALPNNTSSSPQPK 13 0 A0A087WXZ1;A0A087WT22;E7ESS1;A0A087X1Q1;J3KP33;A0A087WZU8;A0A0U1RQC9;P04637-8;P04637-9;P04637-7;P04637-5;P04637-6;P04637-2;P04637-3;P04637-4;P04637 A0A087WXZ1 TP53 Cellular tumor antigen p53 1 0 ALPNNT(0.148)S(0.148)S(0.495)S(0.209)PQPK;ALPNNT(0.037)S(0.119)S(0.442)S(0.402)PQPK ; 130.19 0.0011372 19612600 7452.6 7262.1 7567.3 7654.7 9139.6 7147.6 6694 5462.3 6080.1 6515.2 TRUE FALSE FALSE 6579.017525 7485.836693 7976.411128 7966.891752 8465.389917 7011.271439 6952.189822 6084.106153 5829.475705 6476.447301 1.015837421 1.155855417 1.231602877 1.230133032 1.307103961 1.082579864 1.073457329 0.939420313 0.900103936 1 12.66098691 -7.273908871 6.256757204 1.007216507 1.15346022 0.362201001 0.102177897 0.146224933 26.08320616 0.017306561 0.020230222 5.32E-08 7.273908871 0.146243713 S(ph)PEPDTLPLAAGSDHPLPR ddPTM_HeLa_CUDC101_4h_R1 2 SPEPDTLPLAAGSDHPLPR 19 0 H3BVB1;H3BME1;H7C112;H3BPZ0;Q6PCT2-2;Q6PCT2-3;Q6PCT2 H3BVB1 FBXL19 F-box/LRR-repeat protein 19 1 0 S(0.947)PEPDT(0.053)LPLAAGSDHPLPR;S(0.999)PEPDT(0.001)LPLAAGSDHPLPR ; 116.04 8.39E-05 10449800 1569.83 824.7 651.1 756.81 1388.43 1258.7 1042.61 960.61 1449.04 1314.53 TRUE FALSE FALSE 1385.816907 850.1080295 686.3004355 787.675983 1286.008285 1234.692395 1082.823817 1069.961959 1389.309958 1306.711117 1.060538086 0.650570748 0.525212058 0.602792746 0.984156535 0.944885506 0.828663507 0.818820584 1.063211248 1 10.35172452 -7.273364693 24.53781703 1.028587438 0.767346746 0.460244832 0.136863645 438.5060272 902278.9839 0.025945779 0.02979804 5.33E-08 7.273364693 -0.261240692 GGGDVLEPVSSDSLS(ph)TK ddPTM_HeLa_CUDC101_4h_R1 1 GGGDVLEPVSSDSLSTK 17 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 GGGDVLEPVSS(0.002)DS(0.001)LS(0.709)T(0.288)K 146.1 0.00015661 7117300 3288.2 2166.9 2446.3 1919.9 2169.2 2324.8 2900.7 2512.6 2388.7 2867.2 TRUE FALSE FALSE 2902.762181 2233.659621 2578.554378 1998.201821 2009.182438 2280.458313 3012.580971 2798.624228 2290.236775 2850.145767 1.018460955 0.783700134 0.904709649 0.701087588 0.704940239 0.800119889 1.056991893 0.981923192 0.803550752 1 11.47681999 -7.273301166 23.82622299 1.008717682 0.844933347 0.0264792 0.124747779 358.0451259 719187.1519 0.019510827 0.022415543 5.33E-08 7.273301166 -0.163784335 EKPELSEPSHLNGPSS(ph)DPEAAFLSR ddPTM_HeLa_CUDC101_4h_R1 4 EKPELSEPSHLNGPSSDPEAAFLSR 25 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 EKPELSEPSHLNGPS(0.096)S(0.904)DPEAAFLSR;EKPELSEPSHLNGPS(0.271)S(0.729)DPEAAFLSR;EKPELSEPSHLNGPS(0.117)S(0.883)DPEAAFLSR;EKPELSEPSHLNGPS(0.026)S(0.974)DPEAAFLSR ;;; 147.52 5.06E-11 396784000 15453.4 9722.3 8502.5 8663.5 14153.7 12582.1 11705.1 11048.6 13409.5 12914.2 TRUE FALSE FALSE 13641.97588 10021.83254 8962.170869 9016.834977 13109.60975 12342.11741 12156.56963 12306.32796 12856.75473 12837.38576 1.062675542 0.780675499 0.698130525 0.702388722 1.021205562 0.961419843 0.946966139 0.958631936 1.001508794 1 13.64806382 -7.27327402 24.85711415 1.029596787 0.86686021 0.305392918 0.106447416 639.6941152 1343591.073 0.020064101 0.023040473 5.33E-08 7.27327402 -0.162736577 APS(ph)EEEALEK ddPTM_HeLa_CUDC101_4h_R1 2 APSEEEALEK 10 0 Q14147 Q14147 DHX34 Probable ATP-dependent RNA helicase DHX34 1 0 APS(1)EEEALEK;APS(1)EEEALEK ; 133.05 0.0019645 11354500 4065.7 2704.5 2565.3 2669.2 2545.7 2833.4 3256.6 2018.17 3405.1 3764.1 TRUE FALSE FALSE 3589.124809 2787.822439 2703.987878 2778.061513 2357.908783 2779.357616 3382.208153 2247.910315 3264.740337 3741.710966 0.959220218 0.745066218 0.72266081 0.742457538 0.630168606 0.742803931 0.903920208 0.6007707 0.872526063 1 11.8694824 -7.273123278 3.703396085 0.982695739 0.729110584 0.577127439 0.083500593 0.088130508 2.633560397 0.012585032 0.014810318 5.33E-08 7.273123278 -0.253585154 HPAKPDPSGECNPDLR ddPTM_HeLa_CUDC101_4h_R1 2 HPAKPDPSGECNPDLR 16 1 E9PC52;Q16576;Q16576-2;Q5JP01 E9PC52 RBBP7 Histone-binding protein RBBP7 0 0 ; ; 112.03 0.00081831 14219000 6110.4 5690.4 5513.6 5698.8 5506.6 5182.1 4761.7 5048.5 5816.7 4514.2 FALSE FALSE TRUE 5394.148175 5865.714479 5811.681894 5931.221696 5100.389089 5083.260076 4945.360364 5623.200833 5576.933164 4487.349338 1.202078949 1.30716689 1.295125798 1.321765089 1.136615116 1.132797938 1.102067165 1.253123038 1.242812347 1 12.13164779 -8.896793628 0.867627608 1.007040893 1.216172499 0 0.103316028 0.367366586 0.530483396 0.044750051 0.016565312 1.27E-09 8.896793628 0.209131606 HPDVEVDGFSELR ddPTM_HeLa_CUDC101_4h_R1 2 HPDVEVDGFSELR 13 0 P09874;Q5VX84;Q5VX85 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 0 ; ; 157.5 7.37E-05 41241000 4210 3276 3255.1 3358.5 3641 3435.6 3257.5 3452.7 3458.4 4111 FALSE FALSE TRUE 3716.510182 3376.929677 3431.080552 3495.474147 3372.410684 3370.071654 3383.142866 3845.741412 3315.843288 4086.547589 0.909449872 0.826352711 0.839603719 0.855361175 0.825246889 0.824674516 0.827873111 0.941073443 0.811404545 1 11.99666682 -8.058409419 0.763386023 0.988323707 0.84446915 0 0.065979048 0.210094582 0.268030545 0.01270662 0.00880235 8.74E-09 8.058409419 -0.143854557 APESDT(ph)GDEDQDQER ddPTM_HeLa_CUDC101_4h_R1 1 APESDTGDEDQDQER 15 0 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 APES(0.089)DT(0.911)GDEDQDQER 202.01 6.01E-16 6472400 471.89 551.84 637.14 495.95 487.88 499.86 472.47 456.01 537.37 437.61 TRUE FALSE FALSE 416.5757695 568.8415363 671.5857156 516.1769847 451.8900644 490.3260033 490.6933262 507.9203351 515.2193812 435.0070763 0.957629869 1.307660421 1.543850094 1.186594455 1.038810836 1.127167879 1.128012285 1.16761396 1.184393104 1 8.764895059 -7.273037791 24.2871831 0.979991874 1.212444821 0.176876618 0.144500363 394.3898402 825854.2199 0.024048049 0.027632112 5.33E-08 7.273037791 0.232452947 HPHDIIDDINSGAVECPAS ddPTM_HeLa_CUDC101_4h_R1 2 HPHDIIDDINSGAVECPAS 19 0 P30050;P30050-2 P30050 RPL12 60S ribosomal protein L12 0 0 ; ; 124.5 4.64E-05 36313000 3084.1 2638.1 2776.4 2784.8 3340.1 2831.6 2545.4 2626.4 3176.3 1437.01 FALSE FALSE TRUE 2722.586473 2719.376734 2926.500582 2898.376181 3093.707477 2777.591948 2643.576931 2925.37876 3045.37157 1428.462601 1.905955726 1.903708738 2.048706477 2.029017896 2.165760221 1.944462492 1.850644833 2.047921142 2.131922508 1 10.48024755 -9.045158836 0.549476854 0.873293326 2.020814856 0 0.359105153 0.18068213 0.086468013 0.105364055 0.022546448 9.01E-10 9.045158836 1.147521529 GSS(ph)GSPAHAESYSSGGGGQQK ddPTM_HeLa_CUDC101_4h_R1 1 GSSGSPAHAESYSSGGGGQQK 21 0 P15408 P15408 FOSL2 Fos-related antigen 2 1 0 GS(0.129)S(0.496)GS(0.375)PAHAESYSSGGGGQQK 97.776 0.0001987 7635900 3422.8 1128.8 1069.9 594.54 2807.1 1909.8 1605.7 2505.4 3494.3 2810.3 TRUE FALSE FALSE 3021.584573 1163.57699 1127.74203 618.787911 2600.025826 1873.373747 1667.632387 2790.604609 3350.263475 2793.584211 1.081615711 0.4165176 0.403690007 0.221503225 0.930713245 0.670598631 0.596950821 0.998933413 1.199270622 1 11.44790159 -7.272891844 24.58625082 1.038540766 0.597699106 0.486296318 0.227676719 386.2058181 829108.327 0.038300184 0.044006503 5.33E-08 7.272891844 -0.440841661 METVSNASSSSNPSS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 11 METVSNASSSSNPSSPGR 18 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 METVSNASSSSNPS(0.001)S(0.999)PGR;METVSNASSSSNPS(0.001)S(0.999)PGR;METVSNASSSSNPS(0.007)S(0.993)PGR;METVSNASSSSNPS(0.067)S(0.933)PGR;METVSNASSSSNPS(0.053)S(0.947)PGR;METVSNASSSSNPS(0.048)S(0.952)PGR;METVSNASSSSNPS(0.126)S(0.874)PGR;METVSNASSSSNPS(0.012)S(0.988)PGR;METVSNASSSSNPS(0.069)S(0.931)PGR;METVSNASSSSNPS(0.009)S(0.991)PGR;METVSNASSSSNPS(0.109)S(0.891)PGR ;;;;;;;;;; 415.31 0 734823900 46242.8 36405.55 37207 35817.26 40023.7 41696.6 38689.8 32666.5 34375.74 40485.6 TRUE FALSE FALSE 40822.28908 37527.16184 39218.52297 37278.04268 37071.23139 40901.30683 40182.07855 36385.12232 32958.75745 40244.78985 1.014349665 0.932472551 0.974499385 0.926282453 0.92114362 1.016313092 0.998441753 0.904095225 0.818957126 1 15.2965144 -7.272841667 24.80808862 1.006776232 0.956016328 0 0.068195932 567.8440412 1235463.236 0.005678579 0.006524717 5.34E-08 7.272841667 -0.050759903 LLLAEDS(ph)EEEVDFLSERR ddPTM_HeLa_CUDC101_4h_R1 2 LLLAEDSEEEVDFLSERR 18 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 LLLAEDS(1)EEEVDFLSERR;LLLAEDS(1)EEEVDFLSERR ; 159.01 1.65E-05 12272400 2146.72 2924.63 2326.75 2551.9 3141.97 2737.8 2491.63 2594.4 2703.77 1977.68 TRUE FALSE FALSE 1895.084736 3014.734384 2452.541143 2655.977512 2910.193133 2685.581026 2587.733004 2889.736009 2592.319456 1965.916671 0.963970021 1.533500594 1.247530569 1.351012253 1.480323747 1.36607063 1.316298418 1.469917851 1.318631402 1 10.94098646 -7.272840394 24.96123924 0.982985832 1.386738376 0.463212992 0.132879407 171.6533665 375815.0718 0.012742872 0.014640019 5.34E-08 7.272840394 0.403752545 (ac)AALHTTPDS(ph)PAAQLER ddPTM_HeLa_CUDC101_4h_R1 3 AALHTTPDSPAAQLER 16 0 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 1 0 AALHT(0.237)T(0.023)PDS(0.739)PAAQLER;AALHT(0.042)T(0.06)PDS(0.898)PAAQLER;AALHT(0.002)T(0.001)PDS(0.997)PAAQLER ;; 125.86 3.52E-16 42908000 1032.68 748.52 702.55 902.09 779.93 744.97 856.63 742.26 574.32 917.929 TRUE FALSE FALSE 911.6308158 771.581014 740.5319781 938.8811294 722.3961177 730.7609385 889.6705061 826.7558781 550.6462865 912.4691175 0.999081282 0.845596853 0.81156936 1.02894565 0.791693772 0.800861009 0.975014375 0.906064504 0.603468409 1 9.833631921 -7.272627582 23.58923145 0.99956617 0.880281568 0 0.144469289 256.6327711 541084.0475 0.011903161 0.013686936 5.34E-08 7.272627582 -0.119284602 HPQGEQMYR ddPTM_HeLa_CUDC101_4h_R1 2 HPQGEQMYR 9 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 174.02 1.93E-07 14112500 157.13 153.27 138.29 118.07 50.795 0 52.212 180.109 127.5 0 FALSE FALSE TRUE 138.7114596 157.992067 145.7663757 122.8854049 47.04795405 0 54.22583433 200.6118805 122.244396 0 0 REFITGDVEPTDAESEWHS(ph)ENEEEEK ddPTM_HeLa_CUDC101_4h_R1 2 REFITGDVEPTDAESEWHSENEEEEK 26 1 Q99733;Q99733-2;E9PNJ7;C9J6D1;C9JZI7;A8MXH2;E9PKT8;E9PS34 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 REFITGDVEPT(0.009)DAES(0.169)EWHS(0.823)ENEEEEK;REFITGDVEPTDAES(0.009)EWHS(0.991)ENEEEEK ; 114.71 8.69E-08 31876000 4959.7 2502.3 2503.5 2043.66 3524.3 3789.9 3578.2 2835.1 4569.3 4243.9 TRUE FALSE FALSE 4378.331484 2579.392897 2638.846783 2127.009288 3264.31941 3717.613972 3716.212373 3157.836324 4380.95152 4218.657094 1.037849578 0.611425115 0.625518198 0.504191083 0.773781641 0.881231607 0.880899369 0.74854065 1.038470637 1 12.04256811 -7.272405328 24.62003129 1.017873422 0.720860958 0.615206585 0.111379017 315.2460707 707768.5483 0.021104812 0.024260348 5.34E-08 7.272405328 -0.297012464 ELNSNHDGADET(ph)SEKEQQEAIEHIDEVQNEIDR ddPTM_HeLa_CUDC101_4h_R1 3 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNS(0.096)NHDGADET(0.452)S(0.452)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.5)S(0.5)EKEQQEAIEHIDEVQNEIDR;ELNSNHDGADET(0.5)S(0.5)EKEQQEAIEHIDEVQNEIDR ;; 79.408 3.30E-07 42171200 3858.7 2183.79 1947.27 1739.93 2997.36 3203.28 2880.5 2690.91 3353.86 3233.33 TRUE FALSE FALSE 3406.389035 2251.069981 2052.545306 1810.891866 2776.250724 3142.182771 2991.60185 2997.232317 3215.612471 3214.098009 1.059827369 0.700373783 0.638606944 0.563421483 0.863772889 0.977625064 0.93077493 0.932526733 1.000471193 1 11.65019821 -7.272258767 24.59771176 1.028251819 0.799827184 0.379026965 0.128372577 468.6451226 1065455.449 0.024567763 0.028246027 5.34E-08 7.272258767 -0.228424636 HQAFEAELHANADR ddPTM_HeLa_CUDC101_4h_R1 2 HQAFEAELHANADR 14 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 151.3 0.00015162 29752000 2660.89 2520.1 2444.72 2257.56 2507.74 2479.9 2132.59 2467.66 2283.61 2491.4 FALSE FALSE TRUE 2348.984508 2597.741294 2576.888958 2349.633055 2322.749016 2432.600039 2214.844711 2748.56844 2189.478629 2476.581042 0.948478757 1.048922385 1.040502578 0.948740629 0.937885325 0.982241242 0.894315459 1.109823742 0.88407308 1 11.27413412 HQAFEAELSANQSR ddPTM_HeLa_CUDC101_4h_R1 1 HQAFEAELSANQSR 14 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 76.156 0.002995 0 2391 2051.8 1340.3 1949.4 1993.8 1835.9 1739.2 1882.5 1787.3 2183.3 FALSE FALSE TRUE 2110.730605 2115.013526 1412.760672 2028.904958 1846.721346 1800.883266 1806.281527 2096.796191 1713.626738 2170.313635 0.97254635 0.974519762 0.650947702 0.934844128 0.850900679 0.829780193 0.832267511 0.96612589 0.789575622 1 11.08368783 -6.958330298 24.99999487 0.986325328 0.84449402 0.080109137 0.099955973 94.47914093 56683.13183 0.011599466 0.015244677 1.10E-07 6.958330298 -0.141831308 HQEGEIFDTEK ddPTM_HeLa_CUDC101_4h_R1 1 HQEGEIFDTEK 11 0 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 0 136.96 6.88E-05 0 1411.1 1865.9 2719.4 2348.9 3635.8 2712.9 2928.6 2079.9 3794.4 6582.4 FALSE FALSE TRUE 1245.692997 1923.386167 2866.41899 2444.698295 3367.594278 2661.155952 3041.557083 2316.667409 3637.993226 6543.247592 0.190378398 0.293949777 0.43807283 0.373621548 0.514667102 0.406702622 0.464839064 0.354054676 0.555991986 1 12.67579115 -9.384030614 1.068894662 1.005695692 0.372022149 0.417006327 0.157610674 0.1575891 0.317518907 0.075903485 0.01880064 4.13E-10 9.384030614 -0.633673543 HQEGEIFDTEK(ac)EK ddPTM_HeLa_CUDC101_4h_R1 2 HQEGEIFDTEKEK 13 1 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 1 ; HQEGEIFDTEK(1)EK;HQEGEIFDTEK(1)EK 164.53 3.18E-05 5920100 6943.1 2586.2 2480.5 2359.7 5320.3 4798.9 5628.8 4818.5 5307 4665.4 FALSE TRUE FALSE 6129.240343 2665.877757 2614.603333 2455.938765 4927.832069 4707.368978 5845.904702 5367.018563 5088.243214 4637.649993 1.321626331 0.574833754 0.563777632 0.529565355 1.06257093 1.015033257 1.260531672 1.157271155 1.097159816 1 12.17917823 -7.280873685 24.97430116 1.151879094 0.881624207 0.179080729 0.253783321 1118.507318 1437348.599 0.050047143 0.057274021 5.24E-08 7.280873685 -0.270254886 YGLQDS(ph)DEEEEEHPSK ddPTM_HeLa_CUDC101_4h_R1 3 YGLQDSDEEEEEHPSK 16 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 YGLQDS(1)DEEEEEHPSK;YGLQDS(1)DEEEEEHPSK;YGLQDS(0.971)DEEEEEHPS(0.029)K ;; 248.18 9.23E-56 194023000 16846.1 8589.5 8359.2 8224.5 14857.1 12167.8 11016.8 9539.9 11896.9 13560.2 TRUE FALSE FALSE 14871.4257 8854.132314 8811.123637 8559.930659 13761.12133 11935.71949 11441.72167 10625.88365 11406.50475 13479.54333 1.103258867 0.656856994 0.653666332 0.635031206 1.020889284 0.885469129 0.848821165 0.788297007 0.846208545 1 13.718484 -7.272134661 24.98745519 1.048761136 0.788883478 0.288942507 0.131342595 440.229556 1028509.346 0.021448159 0.024658692 5.34E-08 7.272134661 -0.259877657 HTPSPGLPAEGAPEAPRPS(ph)SPPPEVLEPHSLDQPPATSPR ddPTM_HeLa_CUDC101_4h_R1 1 HTPSPGLPAEGAPEAPRPSSPPPEVLEPHSLDQPPATSPR 40 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 HT(0.016)PS(0.05)PGLPAEGAPEAPRPS(0.455)S(0.455)PPPEVLEPHS(0.022)LDQPPAT(0.002)S(0.001)PR 41.234 0.016675 18745000 371.59 612.18 524.01 502.05 581.3 536.6 455.4 433.72 531.41 439.58 TRUE FALSE FALSE 328.0327835 631.0405402 552.3395656 522.525769 538.4186571 526.365249 472.9649305 483.0929316 509.5050549 436.9653586 0.750706611 1.444143175 1.264035134 1.195805935 1.232176983 1.204592627 1.082385414 1.105563455 1.166007888 1 8.771375101 -7.272081942 24.99102693 0.882278121 1.214042475 0.342986668 0.140345917 361.0631125 847852.516 0.022326459 0.025668714 5.34E-08 7.272081942 0.331764354 HQGVMVGMGQK ddPTM_HeLa_CUDC101_4h_R1 20 HQGVMVGMGQK 11 0 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;C9JUM1;C9JZR7;C9JTX5;Q562R1;P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65 P60709;P63267;P63261 ACTB;ACTBL2;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Beta-actin-like protein 2;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;;;;;;;;;;;;;;;;; ;;;;;;;;;;;;;;;;;;; 157.66 7.74E-05 675013100 123230.05 97278.61 81962.92 98304.15 96000.89 94199.36 88405.76 86898.22 83879.64 61937.15 FALSE FALSE TRUE 108785.2103 100275.6487 86394.08338 102313.4181 88919.09561 92402.66415 91815.59978 96790.36211 80422.08574 61568.74508 1.766890168 1.628677806 1.403213323 1.661775273 1.44422459 1.500804735 1.491269631 1.572069757 1.306216094 1 15.90991054 -9.427576936 1.130994012 0.996814834 1.570249621 0.553218608 0.136036443 0.184676739 0.418801274 0.08382509 0.020596365 3.74E-10 9.427576936 0.573434787 HQHMHDRDDLYAEQMER ddPTM_HeLa_CUDC101_4h_R1 2 HQHMHDRDDLYAEQMER 17 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 0 ; ; 54.811 0.028826 8137000 2182.78 1995.1 3334.97 3004.57 3868.9 3131.03 3139.35 1635.55 3441.13 4201.8 FALSE FALSE TRUE 1926.917837 2056.566666 3515.268566 3127.109351 3583.498955 3071.310819 3260.435781 1821.734401 3299.285165 4176.807507 0.461337477 0.49237765 0.841616129 0.748684096 0.857951665 0.735324962 0.78060475 0.436154742 0.789905965 1 12.02818494 -9.569391346 1.374085503 0.998410372 0.654755768 0.200455128 0.160157006 0.363058391 1.23781453 0.113633866 0.027194075 2.70E-10 9.569391346 -0.343654605 HQLLEADISAHEDR ddPTM_HeLa_CUDC101_4h_R1 1 HQLLEADISAHEDR 14 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 67.115 0.040305 4591900 2000.2 1281.1 862.8 1026.7 1350.1 1622.9 1324.1 1569.9 1466.8 1446 FALSE FALSE TRUE 1765.739588 1320.569173 909.4455778 1068.573264 1250.505813 1591.945886 1375.170981 1748.61107 1406.337883 1437.399128 1.228426784 0.918721284 0.632702191 0.74340748 0.869978135 1.107518333 0.956707816 1.216510457 0.978390661 1 10.489245 -10.33576188 14.48104131 0.999944809 1.028429411 0 0.190320693 0.924095558 7231.703353 0.210024879 0.031239638 4.62E-11 10.33576188 0.028484602 LYREEGLAY(ph)IWMPTPDMS(ph)T(ph)EDEK ddPTM_HeLa_CUDC101_4h_R1 1 LYREEGLAYIWMPTPDMSTEDEK 23 1 H0Y7S8;A0A1W2PPT8 H0Y7S8 EPM2A 3 0 LY(0.033)REEGLAY(0.664)IWMPT(0.459)PDMS(0.922)T(0.922)EDEK 44.054 0.034753 11551000 974.32 430.69 507.49 506.79 621.95 608.57 675.19 519.18 693.85 756.63 TRUE FALSE FALSE 860.1116866 443.9590484 534.9264445 527.4590867 576.0699876 596.9625412 701.2323045 578.2813526 665.2492093 752.1295311 1.143568562 0.590269402 0.711215851 0.701287564 0.765918587 0.793696453 0.932329174 0.768858725 0.884487554 1 9.554837333 -7.271993976 24.99994218 1.06779627 0.757506725 0.540762982 0.104538928 292.7496176 693414.4528 0.016986849 0.019531141 5.35E-08 7.271993976 -0.310289545 AKNWEDEDFYDS(ph)DDDTFLDR ddPTM_HeLa_CUDC101_4h_R1 4 AKNWEDEDFYDSDDDTFLDR 20 1 A0A087X0M4;Q9BWU0;A0A087WWF4 A0A087X0M4 SLC4A1AP Kanadaptin 1 0 AKNWEDEDFYDS(0.885)DDDT(0.115)FLDR;AKNWEDEDFYDS(0.997)DDDT(0.003)FLDR;AKNWEDEDFYDS(0.903)DDDT(0.097)FLDR;AKNWEDEDFY(0.002)DS(0.71)DDDT(0.288)FLDR ;;; 114.64 4.60E-05 106333000 10865 11086.9 10751.8 9824.7 12510.2 10547.5 9903 10869.1 10933.9 9737 TRUE FALSE FALSE 9591.42117 11428.47425 11333.07483 10225.39373 11587.34747 10346.32401 10284.96203 12106.39441 10483.20001 9679.083891 0.990943077 1.180739249 1.170883005 1.056442309 1.197153326 1.068936289 1.062596641 1.250778952 1.08307771 1 13.24065479 -7.271980675 24.69309703 0.995723115 1.135330803 0.368429137 0.066385269 312.0869004 731065.5265 0.009595514 0.011036091 5.35E-08 7.271980675 0.139607688 GS(ph)SGSPAHAESYSSGGGGQQK ddPTM_HeLa_CUDC101_4h_R1 2 GSSGSPAHAESYSSGGGGQQK 21 0 P15408 P15408 FOSL2 Fos-related antigen 2 1 0 GS(0.333)S(0.333)GS(0.333)PAHAESYSSGGGGQQK;GS(0.333)S(0.333)GS(0.333)PAHAESYSSGGGGQQK ; 107.75 2.14E-05 22071000 8498.5 3690 3233.9 3026.3 6511.6 4620.2 4325.1 6327.5 8199.7 7664.1 TRUE FALSE FALSE 7502.318713 3803.684526 3408.734416 3149.725595 6031.252241 4532.077383 4491.920556 7047.797023 7861.704895 7618.513592 0.984748353 0.499268588 0.447427753 0.413430462 0.791657345 0.594876852 0.589605899 0.9250882 1.031921096 1 12.89529383 -7.271864382 23.92887203 0.992797857 0.600810141 0.608263328 0.145717176 187.0909547 429435.5302 0.024601083 0.028307238 5.35E-08 7.271864382 -0.391987716 CGENTS(ph)PVLDAVLK ddPTM_HeLa_CUDC101_4h_R1 1 CGENTSPVLDAVLK 14 0 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 CGENT(0.251)S(0.749)PVLDAVLK 81.992 0.023161 5557000 863.07 1074.8 1079.9 943.41 1036.9 905.22 887.24 744.13 1087.6 955.07 TRUE FALSE FALSE 761.9022429 1107.913314 1138.282661 981.8863376 960.4099528 887.9544367 921.461144 828.8387513 1042.768668 949.3892012 0.802518337 1.166974843 1.198963143 1.03422952 1.011608255 0.935290222 0.970583132 0.87302315 1.098357414 1 9.89085583 -7.271779417 24.96405915 0.906744775 1.027795813 0 0.11875721 897.1994334 2166114.202 0.020849613 0.023983199 5.35E-08 7.271779417 0.121051038 EFITGDVEPT(ph)DAESEWHSENEEEEK ddPTM_HeLa_CUDC101_4h_R1 1 EFITGDVEPTDAESEWHSENEEEEK 25 0 Q99733;Q99733-2;E9PNJ7;C9J6D1;C9JZI7;A8MXH2;E9PKT8;E9PS34 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 EFIT(0.006)GDVEPT(0.447)DAES(0.447)EWHS(0.101)ENEEEEK 40.669 0.03543 7893200 3945.2 2226.2 1979.4 2163.5 3254.2 2751.5 2887.9 2327.3 3325.1 3454.5 TRUE FALSE FALSE 3482.749637 2294.786583 2086.412351 2251.736881 3014.144149 2699.019722 2999.28727 2592.230425 3188.037971 3433.95248 1.014210201 0.668263931 0.60758335 0.655727444 0.877747775 0.78598051 0.873421309 0.754882439 0.928387329 1 11.74565436 -7.271611584 24.90406804 1.006710381 0.74889541 0.602545113 0.086549044 297.1323351 727451.8979 0.015376648 0.017690003 5.35E-08 7.271611584 -0.25781497 TPTSSPAS(ph)SPLVAK ddPTM_HeLa_CUDC101_4h_R1 1 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 T(0.007)PT(0.001)S(0.011)S(0.048)PAS(0.886)S(0.047)PLVAK 205.3 1.08E-17 20832000 2881.3 2717 2579.6 2543 3480.5 2708.7 2790.2 1772.9 2269.3 2621.1 TRUE FALSE FALSE 2543.558382 2800.70755 2719.060979 2646.714532 3223.750449 2657.036061 2897.818949 1974.71977 2175.758493 2605.509581 0.976223001 1.074917387 1.043581263 1.015814546 1.237282132 1.01977597 1.112188944 0.757901558 0.835060638 1 11.34734984 -7.271602957 23.79262351 0.988771971 1.046654933 0.076678873 0.122639509 848.7655424 1986927.679 0.017932341 0.020643992 5.35E-08 7.271602957 0.057882962 HQYYNQEWTLWDR ddPTM_HeLa_CUDC101_4h_R1 2 HQYYNQEWTLWDR 13 0 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 ; ; 129.76 0.0010933 104582000 4784.1 3392.3 3078.8 3524.7 3224.4 3606.6 3327.6 2358.83 3195.1 5154.7 FALSE FALSE TRUE 4223.31505 3496.812742 3245.249241 3668.452501 2986.542436 3537.810114 3455.946647 2627.349672 3063.396626 5124.039615 0.824215925 0.682432808 0.633338047 0.71592977 0.582849209 0.690433794 0.674457441 0.51274968 0.597847959 1 12.32306591 -7.729745564 0.496176984 0.998895619 0.609199809 0 0.134177864 0.196636953 0.119633978 0.028186051 0.021993187 1.86E-08 7.729745564 -0.389695809 HRDLLHNEDR ddPTM_HeLa_CUDC101_4h_R1 4 HRDLLHNEDR 10 1 Q8N684-2;Q8N684;Q8N684-3;F5H669 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 0 ;;; ;;; 106.62 0.0054653 8809160 2393.83 2095.83 2683.18 2725.74 2611.07 2441.11 2371.28 2316.79 2622.07 3220.92 FALSE FALSE TRUE 2113.228876 2160.400038 2828.240827 2836.907459 2418.456568 2394.549894 2462.741064 2580.524009 2513.987165 3201.761825 0.660020636 0.674753513 0.883338918 0.886045751 0.755351803 0.747885079 0.769183093 0.80597001 0.785188688 1 11.64465028 -9.488849094 1.243042016 0.999513206 0.763091743 0.040345708 0.095702449 0.282038862 0.782368735 0.056217509 0.013830151 3.24E-10 9.488849094 -0.236421463 HRDYETATLSDIK ddPTM_HeLa_CUDC101_4h_R1 2 HRDYETATLSDIK 13 1 O43707;O43707-2 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 87.216 0.012222 43946000 9838.8 7133.1 6509 7042.6 7919.3 7145 7446.3 7472.6 8130.5 7342.6 FALSE FALSE TRUE 8685.510779 7352.862356 6860.896229 7329.827669 7335.109016 7008.721029 7733.506285 8323.250579 7795.357349 7298.925889 1.189971088 1.007389644 0.939987107 1.004233744 1.004957322 0.960240059 1.059540322 1.1403391 1.068014317 1 12.83346846 HSLSGS(ph)SPGMK ddPTM_HeLa_CUDC101_4h_R1 2 HSLSGSSPGMK 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HSLS(0.001)GS(0.499)S(0.499)PGMK;HSLS(0.001)GS(0.5)S(0.5)PGMK ; 190.66 3.27E-11 66793000 13323.5 8313.4 7817.6 8219.9 11821.1 10246.1 9664.7 7367.6 12933 11752.2 TRUE FALSE FALSE 11761.73953 8569.526 8240.243103 8555.143051 10949.081 10050.67271 10037.47072 8206.297803 12399.89627 11682.29739 1.006800215 0.73354801 0.705361525 0.732316835 0.937236969 0.860333578 0.859203492 0.702455821 1.061426178 1 13.5120364 -7.271585217 24.78193008 1.00321122 0.795608504 0.665805321 0.075089107 293.6365625 717226.668 0.013034199 0.014996099 5.35E-08 7.271585217 -0.207602716 VVDYSQFQES(ph)DDADEDYGRDSGPPTK ddPTM_HeLa_CUDC101_4h_R1 4 VVDYSQFQESDDADEDYGRDSGPPTK 26 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 VVDY(0.024)S(0.035)QFQES(0.933)DDADEDY(0.006)GRDS(0.003)GPPTK;VVDY(0.001)S(0.016)QFQES(0.983)DDADEDYGRDSGPPTK;VVDYS(0.002)QFQES(0.998)DDADEDYGRDSGPPTK;VVDY(0.019)S(0.065)QFQES(0.907)DDADEDY(0.006)GRDS(0.003)GPPTK ;;; 123.82 2.03E-10 2782247200 12473.8 13299.1 12363 11737.4 13028.4 11717 12588.9 12568.5 13786.5 12428.8 TRUE FALSE FALSE 11011.64007 13708.82951 13031.38118 12216.10191 12067.32089 11493.51775 13074.45809 13999.24724 13218.21463 12354.87294 0.891279103 1.10958887 1.054756389 0.98876791 0.976725616 0.930282148 1.058243023 1.1330952 1.069878638 1 13.59279255 -7.271565423 24.9795883 0.948659578 1.029352023 0.005408549 0.073167304 787.4597246 1942555.305 0.012178035 0.014012254 5.35E-08 7.271565423 0.080692445 LSSSDRYS(ph)DAS(ph)DDSFSEPR ddPTM_HeLa_CUDC101_4h_R1 1 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 2 0 LS(0.002)S(0.009)S(0.004)DRY(0.07)S(0.906)DAS(0.787)DDS(0.214)FS(0.009)EPR 113.86 0.002461 6197700 1407 1090.6 1018.7 1021 1357.9 1434.1 967.59 1118.4 1368.6 1192.5 TRUE FALSE FALSE 1242.073593 1124.200093 1073.774003 1062.640793 1257.730422 1406.746932 1004.91027 1245.714135 1312.185729 1185.406957 1.047803529 0.94836637 0.905827317 0.896435428 1.061011507 1.186720665 0.847734413 1.050874662 1.106949576 1 10.21116671 -7.271468331 24.50231258 1.022573888 0.984178477 0.066933204 0.096632109 1673.674354 4089039.406 0.015924344 0.018321757 5.35E-08 7.271468331 -0.038395411 QGS(ph)PDQVSPVSEMTSTSLYQDKQEGK ddPTM_HeLa_CUDC101_4h_R1 1 QGSPDQVSPVSEMTSTSLYQDKQEGK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QGS(0.549)PDQVS(0.3)PVS(0.057)EMT(0.089)S(0.005)TSLYQDKQEGK 111.18 4.08E-07 18601000 1092.5 1350.4 1244.2 1124.1 1442.8 912.3 1179.5 1322.9 1550.2 1154.2 TRUE FALSE FALSE 964.4388061 1392.004223 1311.465215 1169.945657 1336.367518 894.8993975 1224.99371 1473.493589 1486.3001 1147.334767 0.840590588 1.213250276 1.143053669 1.019707317 1.164758148 0.779981068 1.067686385 1.284275201 1.295437167 1 10.16407068 -7.271468064 24.95115893 0.924723335 1.084358571 0 0.177134415 748.391809 1861980.08 0.023562719 0.02712133 5.35E-08 7.271468064 0.159635236 QGMS(ph)PTFSR ddPTM_HeLa_CUDC101_4h_R1 2 QGMSPTFSR 9 0 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 QGMS(0.996)PT(0.004)FSR;QGMS(0.996)PT(0.004)FSR ; 96.334 0.021179 34692000 2145.71 2378.78 2312.11 2328.09 2582.8 1962.86 2079.23 2122.97 2566.1 2009.79 TRUE FALSE FALSE 1894.193126 2452.067392 2437.10966 2423.039573 2392.27199 1925.421716 2159.426598 2364.640323 2460.324272 1997.83568 0.948122584 1.227361898 1.21987493 1.212832265 1.197431808 0.963753794 1.080882987 1.183601008 1.231494811 1 10.96422221 -7.271367027 24.92567851 0.975502328 1.151230457 0 0.111563199 401.7664319 1008726.629 0.014228363 0.016375257 5.35E-08 7.271367027 0.175728129 KAAACPDPS(ph)LSVWR ddPTM_HeLa_CUDC101_4h_R1 1 KAAACPDPSLSVWR 14 1 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 1 0 KAAACPDPS(0.999)LS(0.001)VWR 84.198 0.0020505 0 808.16 574.11 540.24 524.29 846.26 561.99 633.15 667.45 749.82 670.15 TRUE FALSE FALSE 713.4287099 591.7976486 569.4470085 545.6728124 783.8330858 551.2709771 657.5708076 743.4298101 718.9121022 666.163918 1.070950693 0.88836641 0.854815149 0.819126941 1.176636958 0.827530525 0.987100607 1.115986306 1.079181989 1 9.379733404 -7.271308797 24.77427621 1.033504493 0.948996109 0.127214774 0.113989098 1017.256316 2553519.213 0.018880559 0.021726417 5.35E-08 7.271308797 -0.084508384 HRPDLIDFDK ddPTM_HeLa_CUDC101_4h_R1 1 HRPDLIDFDK 10 1 A0A087WUZ3;Q01082;Q01082-2;F8W6C1;P11277-3;P11277;P11277-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1;SPTB "Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic" 0 0 82.417 0.0226 14491000 6251.2 5935.5 5138.2 5399.4 5489 5216.8 4471.9 5632.3 5582.6 5526.4 FALSE FALSE TRUE 5518.443812 6118.36572 5415.986634 5619.61087 5084.087406 5117.298232 4644.382681 6273.458265 5352.482865 5493.528727 1.004535352 1.113740553 0.98588483 1.02295103 0.92546843 0.931513875 0.845427941 1.141972415 0.974325089 1 12.42351744 -5.769491208 24.83878365 1.011437314 0.950720698 0.100456786 0.078407641 247.7130649 764163.319 0.010512114 0.019296691 1.70E-06 5.769491208 -0.060716616 HRPELIDYGK ddPTM_HeLa_CUDC101_4h_R1 1 HRPELIDYGK 10 1 P12814-4;P12814-3;P12814;P12814-2;H9KV75;G3V2N5;G3V2W4;G3V2X9 P12814-4 ACTN1 Alpha-actinin-1 0 0 76.143 0.029552 24044000 8202.5 7098.7 6589.1 6717 7407.7 6255.6 6777 7099.4 7098.8 7603.8 FALSE FALSE TRUE 7241.015384 7317.402533 6945.326677 6990.948293 6861.248729 6136.284853 7038.39116 7907.566999 6806.184459 7558.572259 0.957987188 0.968093217 0.918867537 0.924903282 0.907744015 0.811831209 0.931179979 1.046172045 0.900459005 1 12.88389803 -7.485914835 0.700112563 0.991011935 0.917534896 0 0.0611184 0.684817425 0.726560259 0.016331217 0.016649297 3.27E-08 7.485914835 -0.073477039 HRPELIEYDK ddPTM_HeLa_CUDC101_4h_R1 2 HRPELIEYDK 10 1 O43707;K7EJH8 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 85.355 0.020094 19781100 12050.7 8483.4 7216.4 9027.4 7390.6 7791.5 7753.1 7071.4 7974.5 10066.8 FALSE FALSE TRUE 10638.13521 8744.763499 7606.540412 9395.576392 6845.410162 7642.890119 8052.139664 7876.379592 7645.787735 10006.92223 1.063077635 0.873871436 0.760127864 0.938907706 0.684067489 0.76376032 0.804656965 0.787093116 0.764049881 1 13.2887107 -7.086403551 3.59363486 1.029538095 0.791952823 0.182247126 0.104076837 0.08347312 2.038825177 0.010350194 0.012955908 8.20E-08 7.086403551 -0.237585271 HRPELIEYDKLR ddPTM_HeLa_CUDC101_4h_R1 2 HRPELIEYDKLR 12 2 O43707;K7EJH8 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 42.475 0.039057 61841000 10774.4 8104.6 7330.4 7822.7 7982.3 8388.4 7928.7 7828.9 7224.2 9699.1 FALSE FALSE TRUE 9511.441165 8354.29312 7726.703597 8141.743519 7393.461632 8228.405246 8234.512615 8720.11033 6926.415418 9641.409322 0.986519797 0.866501239 0.801408107 0.844455748 0.766844492 0.853444239 0.854077691 0.904443535 0.718402796 1 13.23502833 -7.215040778 3.464600444 0.994465406 0.835854903 0 0.093657182 0.069222204 1.689384035 0.005802163 0.007013363 6.09E-08 7.215040778 -0.158610502 SLDGAAAVDSADRS(ph)PRPTSAPAITQGQVAEGGVLDASAK ddPTM_HeLa_CUDC101_4h_R1 2 SLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAK 39 2 P11171;A0A2R8Y5G2;P11171-7;P11171-2;A0A2R8Y5Z6;A0A2R8Y570;A0A2R8YCW8;A0A3B3IU06;A0A2R8Y6G5;A0A2R8YFR9;A0A2R8YD30;Q4VB86;A0A2U3TZH6;A0A2R8Y420;P11171-3;P11171-5;P11171-4;A0A3B3ITP0;A0A2R8Y7N0;A0A2R8Y7Y3;A0A3B3IUD6;A0A2R8Y4N6;P11171-6 P11171 EPB41 Protein 4.1 1 0 S(0.109)LDGAAAVDS(0.071)ADRS(0.205)PRPT(0.205)S(0.205)APAIT(0.205)QGQVAEGGVLDASAK;S(0.003)LDGAAAVDS(0.07)ADRS(0.268)PRPT(0.268)S(0.268)APAIT(0.123)QGQVAEGGVLDASAK ; 52.577 0.0023957 112765000 4748.93 3605.09 3469.73 3408.64 3721.83 3707.84 3086.21 3718.56 3788.89 4431.9 TRUE FALSE FALSE 4192.267624 3716.15855 3657.314099 3547.659073 3447.278016 3637.11913 3205.246154 4141.865839 3632.710351 4405.538862 0.951590204 0.843519639 0.830162714 0.80527245 0.782487256 0.825578719 0.727549173 0.940149655 0.824577983 1 12.10510278 -7.271295751 1.471735588 0.983696223 0.8098987 0.20252657 0.071487429 0.140520659 0.580750683 0.009032995 0.010677359 5.35E-08 7.271295751 -0.173797523 RLSSSSATLLNS(ph)PDR ddPTM_HeLa_CUDC101_4h_R1 2 RLSSSSATLLNSPDR 15 1 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40 Q14244-5 MAP7 Ensconsin 1 0 RLSSSSATLLNS(1)PDR;RLSSSSATLLNS(1)PDR ; 86.258 0.0077297 54733000 2668.6 2421.1 2297.89 2667 2853.4 2408.6 2417.58 2283.14 2568.8 2280.44 TRUE FALSE FALSE 2355.790753 2495.691221 2422.120884 2775.771788 2642.910367 2362.659968 2510.82687 2543.043429 2462.912977 2266.875841 1.039223547 1.100938647 1.06848414 1.224492201 1.165882277 1.042253804 1.107615523 1.121827399 1.086478991 1 11.14648966 -7.271097927 1.253569366 1.01293033 1.125406946 0.293041262 0.052099834 0.251156799 0.76115035 0.009828001 0.01162174 5.36E-08 7.271097927 0.112476616 MLAES(ph)DES(ph)GDEESVSQTDK ddPTM_HeLa_CUDC101_4h_R1 1 MLAESDESGDEESVSQTDK 19 0 P22059 P22059 OSBP Oxysterol-binding protein 1 2 0 MLAES(1)DES(0.998)GDEES(0.002)VSQTDK 84.948 0.015672 2063100 2740.8 1783.2 1571.2 1835.4 1721.5 1914.2 1694.9 1749.8 2204.4 2550 TRUE FALSE FALSE 2419.527579 1838.138278 1656.143825 1910.255545 1594.508375 1877.689824 1760.272861 1948.990159 2113.533699 2534.832487 0.954511823 0.725151776 0.653354347 0.753602282 0.629038954 0.740754994 0.694433605 0.768883218 0.833796202 1 11.3076747 -7.271085233 3.842391257 0.980472468 0.704523618 0.712737765 0.061822828 0.042480444 1.406303764 0.006753072 0.007952993 5.36E-08 7.271085233 -0.27594885 EATQPEPIY(ph)AESTKR ddPTM_HeLa_CUDC101_4h_R1 2 EATQPEPIYAESTKR 15 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 EATQPEPIY(0.993)AES(0.003)T(0.003)KR;EATQPEPIY(0.995)AES(0.004)T(0.002)KR ; 152.07 0.00018485 59236000 4240.1 4338.6 4085.2 4490.1 5364.8 4254.5 3941.7 2960.9 3899.8 3789.8 TRUE FALSE FALSE 3743.081906 4472.267123 4306.058269 4673.225686 4969.049392 4173.352501 4093.732689 3297.956888 3739.048593 3767.258101 0.993582549 1.187141152 1.143021835 1.240484607 1.319009545 1.107795747 1.086661062 0.875426318 0.992511926 1 11.87929916 -7.271028926 24.09984141 0.99696953 1.145215138 0.259985057 0.108948932 399.378046 1003689.954 0.019025698 0.021913401 5.36E-08 7.271028926 0.148245608 QPPVSPLTLS(ph)PGPEAHQGFSR ddPTM_HeLa_CUDC101_4h_R1 2 QPPVSPLTLSPGPEAHQGFSR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 QPPVSPLT(0.001)LS(0.999)PGPEAHQGFSR;QPPVSPLTLS(1)PGPEAHQGFSR ; 113.8 9.50E-06 12320000 2421.23 1810.07 1398.28 1849.64 1971.28 1892.9 1766.47 1426.71 2303.92 2284.2 TRUE FALSE FALSE 2137.41709 1865.836111 1473.875246 1925.076314 1825.862602 1856.796086 1834.60334 1589.120899 2208.951442 2270.613477 0.941339031 0.821732158 0.649108825 0.847822112 0.80412744 0.817750844 0.807976945 0.699864119 0.972843447 1 11.14886642 -7.271003865 2.906202498 0.975134967 0.777139848 0.716519211 0.056511927 0.102607291 1.700566028 0.010028616 0.01183192 5.36E-08 7.271003865 -0.197995118 SMS(ph)AAFCSLLAPER ddPTM_HeLa_CUDC101_4h_R1 1 SMSAAFCSLLAPER 14 0 E9PNR2;Q13671-2;Q13671 E9PNR2 RIN1 Ras and Rab interactor 1 1 0 S(0.019)MS(0.981)AAFCSLLAPER 127.07 0.0010354 19406000 1698.9 1049 1057.4 1056.8 1364 1359.7 1271.9 1192.3 1401.2 1336.7 TRUE FALSE FALSE 1499.757517 1081.318447 1114.566242 1099.900872 1263.380437 1333.765988 1320.957609 1328.026613 1343.441943 1328.749249 1.128698676 0.813786685 0.838808559 0.827771585 0.950804253 1.003775535 0.99413611 0.999456153 1.011057537 1 10.37585316 -7.270894375 24.97778915 1.060774374 0.919265871 0.373371425 0.075446698 533.2216479 1408638.927 0.015099374 0.017383688 5.36E-08 7.270894375 -0.141508503 ASLGSLEGEAEAEAS(ph)S(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 AS(0.001)LGS(0.061)LEGEAEAEAS(0.953)S(0.985)PK 95.477 0.032987 88028000 2780.9 2088.4 1626 2193.7 2579.1 2462.6 1961.6 1806 2016.4 2509.7 TRUE FALSE FALSE 2454.927118 2152.741129 1713.906478 2283.168568 2388.844931 2415.630008 2037.259569 2011.58774 1933.283139 2494.772193 0.984028572 0.862900883 0.686999191 0.915181184 0.957540307 0.968276789 0.816611463 0.806321213 0.774933737 1 11.28469237 -7.270771225 6.066070392 0.992714777 0.860805335 0 0.103199996 0.128200936 20.81628975 0.013708818 0.016075409 5.36E-08 7.270771225 -0.131909442 S(ph)Y(ph)WTMLMGQQEPAK ddPTM_HeLa_CUDC101_4h_R1 1 SYWTMLMGQQEPAK 14 0 Q9Y238 Q9Y238 DLEC1 Deleted in lung and esophageal cancer protein 1 2 0 S(0.894)Y(0.884)WT(0.222)MLMGQQEPAK 50.284 0.0033089 0 210.26 324.27 211.29 265.34 301.44 374.77 262.85 229.67 339.71 243.63 TRUE FALSE FALSE 185.6136415 334.2603743 222.7129765 276.1617121 279.2033718 367.6218867 272.9882125 255.8147044 325.70701 242.1808779 0.76642567 1.380209607 0.919614209 1.140311797 1.152871251 1.517964134 1.127207957 1.056296049 1.344891524 1 7.919941147 -7.270536962 24.87580392 0.889701011 1.182361324 0 0.218390144 468.9890377 1282369.092 0.029583622 0.034080915 5.36E-08 7.270536962 0.292660313 DYGNS(ph)PLHR ddPTM_HeLa_CUDC101_4h_R1 3 DYGNSPLHR 9 0 A0A0U1RRM4;A0A0D9SF20;A0A087WUW5;K7ELW5;A6NLN1 A0A0U1RRM4;A6NLN1 PTBP1 1 0 DYGNS(1)PLHR;DYGNS(1)PLHR;DYGNS(1)PLHR ;; 119.21 0.0010188 25888000 14005.4 11894.6 13174 12929.7 14783.9 13060.6 10487.3 5617 14129.4 13353.7 TRUE FALSE FALSE 12363.70824 12261.05853 13886.22629 13457.02905 13693.32115 12811.49082 10891.79867 6256.416575 13546.98015 13274.2716 0.931403893 0.92367091 1.046100811 1.013767795 1.031568553 0.965137011 0.820519498 0.471319012 1.020544144 1 13.69634508 -4.285764983 2.0263505 0.977641605 0.340401632 0.93774393 0.040769366 0.131357723 0.599043703 0.006485073 0.151084736 5.18E-05 4.285764983 -0.637239974 down QPVSEPPADQVASDMPHS(ph)PTLR ddPTM_HeLa_CUDC101_4h_R1 2 QPVSEPPADQVASDMPHSPTLR 22 0 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;H7C231;H7C2V9 H7BYY2 BCOR BCL-6 corepressor 1 0 QPVSEPPADQVASDMPHS(0.924)PT(0.075)LR;QPVSEPPADQVASDMPHS(0.798)PT(0.201)LR ; 135.19 2.27E-07 29408000 7035.9 4415.9 3929.5 4372.9 5739.2 5056 5003.5 4854.7 5928.8 6295.1 TRUE FALSE FALSE 6211.162468 4551.948645 4141.940656 4551.245763 5315.83065 4959.565224 5196.486671 5407.339425 5684.412355 6257.656465 0.992570062 0.727420668 0.661899655 0.727308344 0.849492247 0.792559523 0.830420574 0.864115736 0.908393164 1 12.61140674 -7.270456586 24.39391091 0.996491428 0.777743484 0.630794493 0.064720413 174.9696445 473337.8643 0.010809236 0.012459941 5.36E-08 7.270456586 -0.218747944 SQS(ph)TTFNPDDMSEPEFKR ddPTM_HeLa_CUDC101_4h_R1 2 SQSTTFNPDDMSEPEFKR 18 1 Q86W92-4;Q86W92;Q86W92-3;F5GZP6;Q86W92-2 Q86W92-4;Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.093)QS(0.393)T(0.393)T(0.122)FNPDDMSEPEFKR;S(0.174)QS(0.687)T(0.131)T(0.009)FNPDDMSEPEFKR ; 133.51 3.69E-05 179168000 2606.8 1994.46 1867.89 1781.08 2574.5 2128.67 2250 1892.08 2475.2 2276.05 TRUE FALSE FALSE 2301.234856 2055.906949 1968.873783 1853.720141 2384.584264 2088.069166 2336.783254 2107.466739 2373.171208 2262.511953 1.017115005 0.908683353 0.870215859 0.81931949 1.053954327 0.922898623 1.032826921 0.931472091 1.04890991 1 11.1437097 -7.270308981 24.10330057 1.008082088 0.935281816 0.261922986 0.066308532 457.8712854 1244271.828 0.011172556 0.012884048 5.37E-08 7.270308981 -0.072800272 TATNDEESPLSVS(ph)SPEGTGTWLHYTSGVGTGR ddPTM_HeLa_CUDC101_4h_R1 2 TATNDEESPLSVSSPEGTGTWLHYTSGVGTGR 32 0 A0A087WZV0;O43314-2;O43314;A0A087WWN8 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 TATNDEESPLS(0.014)VS(0.492)S(0.492)PEGT(0.002)GTWLHYTSGVGTGR;TATNDEESPLS(0.014)VS(0.491)S(0.491)PEGT(0.003)GT(0.001)WLHYTSGVGTGR ; 117.21 1.50E-12 28148000 1340.56 765.54 546.92 436.61 1591.15 1104.3 1100.95 767.19 1137.97 1031.3 TRUE FALSE FALSE 1183.421589 789.12538 576.4881495 454.416843 1473.774035 1083.237317 1143.41401 854.5238085 1091.062395 1025.165782 1.154370942 0.769753921 0.562336512 0.443261813 1.437595812 1.056645995 1.11534547 0.833546948 1.064278982 1 10.00164151 -7.270278366 24.70185475 1.072897388 0.895024807 0.090519925 0.267453883 1132.068896 3163727.397 0.048392825 0.055787482 5.37E-08 7.270278366 -0.177872581 NNTAAET(ph)EDDES(ph)DGEDRGGGTSGSLR ddPTM_HeLa_CUDC101_4h_R1 1 NNTAAETEDDESDGEDRGGGTSGSLR 26 1 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein 2 0 NNT(0.114)AAET(0.865)EDDES(0.9)DGEDRGGGT(0.045)S(0.038)GS(0.038)LR 57.851 0.0082186 11437000 1573 849.53 911.01 908.65 960.45 1370.5 1171.4 1035.8 994.85 1140.7 TRUE FALSE FALSE 1388.615325 875.7030124 960.2619563 945.7086745 889.599517 1344.359996 1216.58129 1153.711285 953.8418619 1133.915066 1.224620226 0.772282721 0.846855276 0.834020733 0.784538052 1.18559144 1.072903366 1.017458291 0.841193393 1 10.14709687 -7.270169667 24.93769418 1.106070659 0.933263787 0 0.158452521 719.4055685 2054947.34 0.026672257 0.030748486 5.37E-08 7.270169667 -0.172806872 GELS(ph)PSFLNPPLPPSIDDRDLSTEEVR ddPTM_HeLa_CUDC101_4h_R1 1 GELSPSFLNPPLPPSIDDRDLSTEEVR 27 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GELS(0.796)PS(0.178)FLNPPLPPS(0.025)IDDRDLSTEEVR 53.28 0.0088195 19447000 725.95 860.56 794.28 808.21 786.11 683.06 823.7 783.15 790.26 741.13 TRUE FALSE FALSE 640.8552415 887.0728336 837.2211794 841.1722972 728.1202315 670.0317686 855.4703849 872.3006304 757.6851483 736.7217258 0.869874227 1.204081273 1.136414402 1.141777509 0.988324636 0.909477412 1.161185228 1.184030007 1.028455008 1 9.524975978 -7.270131187 24.99992488 0.938551718 1.096655793 0.291136914 0.09502723 526.1381752 1513309.46 0.017354904 0.02000467 5.37E-08 7.270131187 0.158104075 TLS(ph)TSDDVEDRENEK ddPTM_HeLa_CUDC101_4h_R1 1 TLSTSDDVEDRENEK 15 1 Q96A65;Q96A65-2 Q96A65 EXOC4 Exocyst complex component 4 1 0 T(0.151)LS(0.773)T(0.038)S(0.038)DDVEDRENEK 69.805 0.022328 4090000 1939.7 1169.8 1057.9 758.8 1083.2 1234.4 1444 2323.3 1011 1710.4 TRUE FALSE FALSE 1712.331306 1205.840151 1115.093274 789.7471438 1003.294494 1210.855877 1499.695564 2587.775081 969.3261521 1700.226465 1.007119547 0.709223257 0.655849851 0.464495266 0.590094623 0.712173291 0.882056358 1.522017881 0.570115906 1 10.73151121 -7.270023866 22.911869 1.00336203 0.765861574 0 0.302143975 299.3054347 798840.3871 0.046469221 0.053651499 5.37E-08 7.270023866 -0.237500455 TGTGDIATCYS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 TGTGDIATCYSPR 13 0 E9PMR6;Q9NZN5-2;Q9NZN5 E9PMR6 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 0 TGTGDIAT(0.001)CYS(0.999)PR 115.83 0.0030718 10641000 1577.9 1593.1 1582.2 1545.1 1890 1658 1377.5 1186.1 1523.8 1433.7 TRUE FALSE FALSE 1392.940954 1642.181523 1667.738518 1608.115856 1750.578465 1626.376412 1430.630636 1321.12083 1460.988319 1425.172289 0.977384254 1.152268772 1.170201337 1.128365931 1.228327606 1.141178807 1.003829956 0.926990259 1.025131018 1 10.47692062 -7.269736613 24.05184453 0.989320338 1.112515064 0.256885029 0.081953834 331.5544208 961100.6671 0.01466107 0.016921544 5.37E-08 7.269736613 0.123194726 DSGYIDCWDSERSDS(ph)LSPPR ddPTM_HeLa_CUDC101_4h_R1 1 DSGYIDCWDSERSDSLSPPR 20 1 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 DSGYIDCWDS(0.001)ERS(0.081)DS(0.459)LS(0.459)PPR 76.586 0.0031052 23835000 1907.8 2315.9 1768.4 1937.2 2581.6 2207.7 1502.1 2211.4 2065.2 2174.3 TRUE FALSE FALSE 1684.170576 2387.250134 1864.005053 2016.207389 2391.160511 2165.591801 1560.0365 2463.136837 1980.071582 2161.367167 0.779215397 1.104509299 0.862419436 0.932838909 1.106318514 1.001954612 0.72178227 1.139619809 0.91611995 1 11.07772846 -7.269721184 24.94476439 0.89574061 0.970524704 0.075756625 0.128769587 1401.540997 4221428.522 0.023218811 0.026783953 5.37E-08 7.269721184 0.074784094 EVDEDS(ph)EPER ddPTM_HeLa_CUDC101_4h_R1 2 EVDEDSEPER 10 0 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EVDEDS(1)EPER;EVDEDS(1)EPER ; 148.78 0.00056938 77535000 6847.9 4513 5102.3 5072.5 4969.2 5129.4 4941.4 4073.5 4963.3 5905.1 TRUE FALSE FALSE 6045.199543 4652.040181 5378.145772 5279.378475 4602.632016 5031.565241 5131.991453 4537.210774 4758.710673 5869.976203 1.029850775 0.792514317 0.916212534 0.899386691 0.784097219 0.857169615 0.874278068 0.772952158 0.810686536 1 12.51913894 -7.269630989 24.99991959 1.014096203 0.846960612 0.128180321 0.079126894 211.5208806 645537.9668 0.007612958 0.008786167 5.37E-08 7.269630989 -0.167135591 VAQGATEKS(ph)PEDKVQIAANEETQER ddPTM_HeLa_CUDC101_4h_R1 1 VAQGATEKSPEDKVQIAANEETQER 25 2 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 VAQGAT(0.036)EKS(0.964)PEDKVQIAANEETQER 63.122 0.003117 17343000 391.47 439.23 551.36 614.91 562.95 395.21 424.18 402.5 493.74 285.61 TRUE FALSE FALSE 345.58248 452.7621557 581.1681894 639.9886877 521.4223001 387.6720277 440.5407647 448.318973 473.3878282 283.911179 1.217220404 1.594731695 2.047007065 2.254186291 1.836568401 1.365469402 1.551685165 1.579081791 1.667380023 1 8.149295846 -7.269588085 2.510581426 1.089887667 1.771270455 0.269779587 0.302281203 0.155857746 1.880437747 0.048964499 0.057837904 5.38E-08 7.269588085 0.681382788 PTLLANGGHGVEGSDTTGSPT(ph)EFLEEK ddPTM_HeLa_CUDC101_4h_R1 1 PTLLANGGHGVEGSDTTGSPTEFLEEK 27 0 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;H7C456;A0A0J9YW37 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 PTLLANGGHGVEGSDTT(0.011)GS(0.41)PT(0.579)EFLEEK 114.14 4.40E-08 10074000 1303.9 762.14 811.26 890.32 949.66 870.11 826.3 674.86 949.06 1168.7 TRUE FALSE FALSE 1151.058819 785.62063 855.1191695 926.6310979 879.6054738 853.5141015 858.1706678 751.6833345 909.9393451 1161.74852 0.990798609 0.676239837 0.736062198 0.797617627 0.757139311 0.734680601 0.738688841 0.647027581 0.783249842 1 10.18208209 -7.269577793 24.87409243 0.995654907 0.731790636 0.52543232 0.077768231 108.912396 332877.174 0.006645596 0.00766998 5.38E-08 7.269577793 -0.263864271 DSGSIS(ph)LQETR ddPTM_HeLa_CUDC101_4h_R1 1 DSGSISLQETR 11 0 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 DSGS(0.24)IS(0.76)LQETR 101.38 0.012477 35806000 2208.6 1384.4 1463.6 1365 1572.6 1469.7 1439.9 1713.8 1637.3 1982.9 TRUE FALSE FALSE 1949.711256 1427.051723 1542.726643 1420.6706 1456.592431 1441.667921 1495.437425 1908.892065 1569.809801 1971.105623 0.989146007 0.723985415 0.782670713 0.720748084 0.738972288 0.731400644 0.758679499 0.968437228 0.796410798 1 10.94478937 -7.26954309 24.80742818 0.994874511 0.769505878 0.295213096 0.092814268 204.5320576 626121.1734 0.011156425 0.012875827 5.38E-08 7.26954309 -0.225368633 EFITGDVEPTDAESEWHS(ph)ENEEEEK ddPTM_HeLa_CUDC101_4h_R1 4 EFITGDVEPTDAESEWHSENEEEEK 25 0 Q99733;Q99733-2;E9PNJ7;C9J6D1;C9JZI7;A8MXH2;E9PKT8;E9PS34 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 EFITGDVEPT(0.001)DAES(0.16)EWHS(0.84)ENEEEEK;EFITGDVEPT(0.003)DAES(0.009)EWHS(0.988)ENEEEEK;EFITGDVEPT(0.042)DAES(0.23)EWHS(0.728)ENEEEEK;EFITGDVEPTDAES(0.001)EWHS(0.999)ENEEEEK ;;; 117.38 1.57E-08 479578500 11455.1 6390.47 4978.02 5518.05 9646.35 8267.29 8004.67 6628.47 9974.68 10234.3 TRUE FALSE FALSE 10112.35054 6587.352806 5247.146819 5743.09993 8934.757979 8109.605217 8313.412803 7383.028232 9563.519469 10173.42593 0.993996576 0.64750585 0.515769895 0.564519757 0.878244757 0.797136115 0.817169443 0.725717009 0.940049059 1 13.31251797 -7.269437041 24.36459891 0.997165062 0.708116477 0.574768215 0.106602839 218.5158749 665699.9907 0.019660359 0.022700509 5.38E-08 7.269437041 -0.289048584 QLPLEPESPS(ph)GQVGPR ddPTM_HeLa_CUDC101_4h_R1 1 QLPLEPESPSGQVGPR 16 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 QLPLEPES(0.105)PS(0.895)GQVGPR 181.86 1.24E-10 50142000 2077.3 1410.5 1372.3 1621.8 1205.5 1531 1762 1537.6 1313.8 1816.8 TRUE FALSE FALSE 1833.802043 1453.955833 1446.490689 1687.944014 1116.572667 1501.798726 1829.96093 1712.634169 1259.644608 1805.993593 1.015397868 0.805072531 0.800938993 0.934634553 0.618259484 0.831563706 1.013270998 0.948305783 0.697480109 1 10.81857706 -7.269424248 24.38695155 1.007271221 0.848261764 0 0.140737767 360.5966384 1101312.853 0.01758062 0.020301164 5.38E-08 7.269424248 -0.159009457 RSASPDDDLGS(ph)SNWEAADLGNEERK ddPTM_HeLa_CUDC101_4h_R1 1 RSASPDDDLGSSNWEAADLGNEERK 25 2 E9PM92;O00193;E9PQA1 E9PM92 C11orf58;SMAP Small acidic protein 1 0 RS(0.003)AS(0.012)PDDDLGS(0.827)S(0.157)NWEAADLGNEERK 116.45 4.01E-08 29505000 658.16 795.46 575.92 836.45 731.74 571.21 687.22 860.32 886.06 715.56 TRUE FALSE FALSE 581.0114825 819.9671797 607.0559773 870.5640464 677.760998 560.315121 713.7263056 958.2553513 849.5362318 711.3038173 0.816826043 1.152766455 0.853441191 1.223899022 0.95284319 0.78772967 1.003405701 1.347181511 1.194336669 1 9.474322096 -7.269294246 24.95046966 0.913501191 1.030196885 0 0.185863947 1055.39189 3352378.391 0.028151193 0.032496709 5.38E-08 7.269294246 0.116695694 IVEYS(ph)PPSAPR ddPTM_HeLa_CUDC101_4h_R1 2 IVEYSPPSAPR 11 0 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 1 0 IVEY(0.001)S(0.832)PPS(0.167)APR;IVEYS(1)PPSAPR ; 150.09 4.82E-07 42400000 4932.2 4644.5 4458.4 4348.6 4709 4949.3 4497.2 4188.8 4648 4566.7 TRUE FALSE FALSE 4354.054993 4787.59154 4699.43459 4525.954704 4361.626452 4854.900349 4670.65851 4665.63606 4456.407473 4539.537065 0.959140752 1.054643121 1.035223311 0.997007985 0.960808644 1.069470362 1.028884321 1.027777941 0.98168765 1 12.14832947 -7.269291727 24.94929614 0.980705355 1.023570834 0.322404266 0.029558292 555.4861815 1764947.687 0.005445253 0.00627955 5.38E-08 7.269291727 0.042865479 HSGNITFDEIVNIAR ddPTM_HeLa_CUDC101_4h_R1 1 HSGNITFDEIVNIAR 15 0 P30050;P30050-2 P30050 RPL12 60S ribosomal protein L12 0 0 134.88 0.00052277 23147000 1607.7 1327.5 1450.7 1290.6 1609.9 1472.1 1294.1 1497.8 1552.5 1460 FALSE FALSE TRUE 1419.247843 1368.398702 1529.12923 1343.236246 1491.140884 1444.022145 1344.01387 1668.303498 1488.505293 1451.315855 0.977904181 0.942867603 1.053615741 0.925529919 1.027440635 0.994974416 0.926065726 1.149510971 1.025624634 1 10.50314582 -4.247911553 24.66433829 0.985969762 1.149511101 0.581587902 0.041605977 882.5583059 1609074.594 0.00481109 0.124702412 5.65E-05 4.247911553 0.163541339 RAS(ph)LSDLTDLEDIEGLTVR ddPTM_HeLa_CUDC101_4h_R1 2 RASLSDLTDLEDIEGLTVR 19 1 Q8WZ73-3;Q8WZ73-2;Q8WZ73;J3KSI3;J3KSU7;K7EN88 Q8WZ73-3 RFFL;hCG_2039718 E3 ubiquitin-protein ligase rififylin 1 0 RAS(0.917)LS(0.082)DLTDLEDIEGLTVR;RAS(0.938)LS(0.062)DLTDLEDIEGLTVR ; 93.416 0.0014187 4046200 1552.54 983.04 1055.43 1063.64 1002.87 1250.82 936.11 1227.63 1321.45 1320.92 TRUE FALSE FALSE 1370.553615 1013.326297 1112.489738 1107.019837 928.8902781 1226.962693 972.2160763 1367.378437 1266.979272 1313.063109 1.043783505 0.771727033 0.84724773 0.843081973 0.707422417 0.934427815 0.740418392 1.04136536 0.964903562 1 10.35872054 -7.269266173 24.9714059 1.020675548 0.835756557 0.386095618 0.092697077 333.5592757 1064219.887 0.013927922 0.01608329 5.38E-08 7.269266173 -0.184918991 HSIANAK(ac)FLETAK ddPTM_HeLa_CUDC101_4h_R1 1 HSIANAKFLETAK 13 1 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 0 1 HSIANAK(1)FLETAK 81.647 0.036362 1279400 1240.2 1358.5 994.38 1592.3 1182 1618.2 1438.4 1736.2 939.76 997.69 FALSE TRUE FALSE 1094.825636 1400.353775 1048.139191 1657.240877 1094.806215 1587.335531 1493.87957 1933.84199 901.022695 991.7556955 1.103926744 1.411994689 1.056852202 1.671017252 1.103907162 1.600530794 1.506297949 1.949917705 0.908512751 1 9.953840967 -1 0.213768847 0.968763249 5.504363802 0.669126347 0.188593136 19.48828353 0.230399609 0.132131683 30.490846 0.1 1 4.535600553 DTHPGSPGS(ph)PGPALRPLPAR ddPTM_HeLa_CUDC101_4h_R1 1 DTHPGSPGSPGPALRPLPAR 20 1 Q8N0Y2-2;Q8N0Y2 Q8N0Y2-2 ZNF444 Zinc finger protein 444 1 0 DT(0.007)HPGS(0.331)PGS(0.662)PGPALRPLPAR 75.445 0.002814 11075000 2335.8 1614.1 1646.5 1411.1 2561.2 1961.7 1447 1420.5 2317.5 1997 TRUE FALSE FALSE 2062.001065 1663.828508 1735.51477 1468.650757 2372.265379 1924.283841 1502.811275 1582.203978 2221.971669 1985.121755 1.038727755 0.83814935 0.874261121 0.739829058 1.195022609 0.969353057 0.757037331 0.797031202 1.119312538 1 10.95501178 -7.269073305 24.40608895 1.01828811 0.886444398 0.263237669 0.127188971 515.2655874 1647330.115 0.021321049 0.024630491 5.38E-08 7.269073305 -0.131843712 VSLEPHQGPGT(ph)PESK ddPTM_HeLa_CUDC101_4h_R1 2 VSLEPHQGPGTPESK 15 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 VSLEPHQGPGT(0.883)PES(0.117)K;VSLEPHQGPGT(0.996)PES(0.004)K ; 103.9 0.0058753 319390000 5901 3296.5 3410.2 2462.1 5264.5 4502.5 4044.6 2333.9 5981.4 5230.8 TRUE FALSE FALSE 5209.293725 3398.061258 3594.565727 2562.51508 4876.148323 4416.622314 4200.601577 2599.581742 5734.84416 5199.686969 1.001847564 0.653512659 0.691304255 0.492821029 0.937777284 0.849401578 0.807856627 0.499949662 1.10292104 1 12.34420906 -7.269035751 24.31952033 1.000872472 0.714501155 0.546516791 0.136606495 238.1570511 762450.1244 0.022440339 0.025932907 5.38E-08 7.269035751 -0.286371317 HSLEEDEGSDFITENR ddPTM_HeLa_CUDC101_4h_R1 2 HSLEEDEGSDFITENR 16 0 Q9NUQ3 Q9NUQ3 TXLNG Gamma-taxilin 0 0 ; ; 269.05 1.19E-85 11467400 3540.9 3171.3 2886.4 2918.6 3433.5 2787.7 2949.9 3061.7 3428.5 3486.6 FALSE FALSE TRUE 3125.84107 3269.003994 3042.447515 3037.633123 3180.217545 2734.529267 3063.678631 3410.231552 3287.175779 3465.861548 0.901894385 0.943200976 0.877832964 0.876443874 0.917583551 0.788989759 0.883958747 0.983949158 0.948444054 1 11.75899831 -9.186648918 0.422486948 1.028876751 0.885158188 0.258803766 0.049981703 1.502344487 0.3699893 0.095420871 0.015629586 6.51E-10 9.186648918 -0.143718563 HSLGLDSLNK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 HSLGLDSLNKK 11 1 Q92585 Q92585 MAML1 Mastermind-like protein 1 0 1 HSLGLDSLNK(1)K 121.61 0.001499 1914500 3592.6 1804.5 1881.1 2392.8 3861.3 3309.5 2909.4 4023 2206.4 2128.5 FALSE TRUE FALSE 3171.480874 1860.094506 1982.797956 2490.388727 3576.459592 3246.376802 3021.616533 4480.962058 2115.451258 2115.839587 1.498923119 0.879128322 0.937121116 1.17702152 1.690326437 1.534320853 1.428093392 2.117817478 0.999816466 1 11.04701454 -1 0.478104542 1.186049827 24.71084025 0.607727486 0.236779033 56.43064269 0.57198471 0.055882375 1327.369077 0.1 1 23.52479042 S(ph)PTFSEELPVLGDGQQLR ddPTM_HeLa_CUDC101_4h_R1 2 SPTFSEELPVLGDGQQLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 0 S(1)PTFSEELPVLGDGQQLR;S(1)PTFSEELPVLGDGQQLR ; 254.53 5.36E-57 16577700 0 427.94 396.4 193.37 222.05 337.07 113.5 125.15 287.48 295.71 TRUE FALSE FALSE 0 441.1243242 417.830583 201.2564644 205.6698139 330.6409513 117.877733 139.3965701 275.6299527 293.9511038 0 1.500672454 1.421428862 0.684659666 0.699673555 1.124816159 0.401011364 0.474216862 0.937672794 1 8.199432385 -7.269023149 24.95715512 0.527777803 0.894270247 0.048071419 0.432421355 1023.924641 3369591.282 0.087133866 0.10065821 5.38E-08 7.269023149 0.366492444 LPEGPVDS(ph)EDDEEEDEEIDRTDPLQGR ddPTM_HeLa_CUDC101_4h_R1 1 LPEGPVDSEDDEEEDEEIDRTDPLQGR 27 1 E9PCH4;Q8TEU7;Q8TEU7-4;B7Z7Y1;Q8TEU7-2;Q8TEU7-5;Q8TEU7-3;D6RD23;D6RIH0;D6RB02;Q8TEU7-6 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 LPEGPVDS(1)EDDEEEDEEIDRTDPLQGR 129.62 2.28E-11 43968000 305.62 341.92 351.71 253.65 326.19 428.38 266.34 241.85 194.96 315.19 TRUE FALSE FALSE 269.7956869 352.4541499 370.7245065 263.9949434 302.1276136 420.2093652 276.612823 269.3812264 186.9236663 313.3152359 0.8610998 1.124918643 1.183231659 0.842585719 0.96429276 1.341171182 0.882857874 0.859776977 0.596599351 1 8.291471116 -7.268950192 24.78255074 0.934408242 1.031178602 0.131643412 0.185259963 1060.271488 3498446.295 0.02635813 0.030441393 5.38E-08 7.268950192 0.096770359 ASS(ph)PPDRIDIFGR ddPTM_HeLa_CUDC101_4h_R1 3 ASSPPDRIDIFGR 13 1 Q9NWB6;Q9NWB6-2 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 1 0 AS(0.066)S(0.934)PPDRIDIFGR;AS(0.197)S(0.803)PPDRIDIFGR;AS(0.033)S(0.967)PPDRIDIFGR ;; 103.43 0.0041351 1027313000 4901.9 5677.8 5614.9 4569.3 6927.1 6136.2 5488.1 6040.8 5759.7 4190.3 TRUE FALSE FALSE 4327.306713 5852.726288 5918.458478 4755.655804 6416.101634 6019.162209 5699.777855 6728.460254 5522.282728 4165.375909 1.038875436 1.40508958 1.420870194 1.141711074 1.540341562 1.445046579 1.368370582 1.615330861 1.325758551 1 12.02423098 -7.268905851 5.071415963 1.017084607 1.413822656 0.401684375 0.151454722 0.06785899 5.479774233 0.019000561 0.022353598 5.38E-08 7.268905851 0.396738049 NAPLPSLQNGPNTPNKPS(ph)SPPPPQQFVVQHS(ph)LFGSPVAK ddPTM_HeLa_CUDC101_4h_R1 1 NAPLPSLQNGPNTPNKPSSPPPPQQFVVQHSLFGSPVAK 39 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 2 0 NAPLPS(0.002)LQNGPNT(0.024)PNKPS(0.485)S(0.491)PPPPQQFVVQHS(0.762)LFGS(0.237)PVAK 55.35 0.00068214 11220000 444.53 637.24 502.87 626.07 741.74 723.14 405.3 399.16 716.2 460.65 TRUE FALSE FALSE 392.4228673 656.8726091 530.0566733 651.6038407 687.023318 709.3473093 420.9325568 444.5987609 686.6779329 457.9100333 0.856986829 1.434501455 1.157556364 1.422995334 1.500345631 1.549097547 0.919247289 0.970930376 1.499591367 1 8.838920366 -7.268848291 24.9338361 0.932465998 1.285125545 0 0.27167457 436.7766335 1469919.107 0.036809796 0.042546956 5.38E-08 7.268848291 0.352659547 SNVSSPAT(ph)PTASSSSSTTPTR ddPTM_HeLa_CUDC101_4h_R1 1 SNVSSPATPTASSSSSTTPTR 21 0 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVSSPAT(0.462)PT(0.462)AS(0.058)S(0.016)S(0.001)S(0.001)STTPTR 218.74 3.12E-34 23821000 1772.2 1094.7 915.46 977.91 1076.6 1402.9 1383.7 1884.4 1224.3 1397.3 TRUE FALSE FALSE 1564.465402 1128.426409 964.9525367 1017.793397 997.1813629 1376.14202 1437.069773 2098.912479 1173.833836 1388.988797 1.126334068 0.812408575 0.694715853 0.732758535 0.717918938 0.990750985 1.034615812 1.511108285 0.84509957 1 10.43981925 -7.268691198 24.85514449 1.059657754 0.909753502 0 0.236994455 1064.122392 3647205.345 0.040280125 0.046571119 5.39E-08 7.268691198 -0.149904252 HSVTAATPPPS(ph)PTSGES(ph)GDLLSNLLQSPSSAK ddPTM_HeLa_CUDC101_4h_R1 1 HSVTAATPPPSPTSGESGDLLSNLLQSPSSAK 32 0 Q96QU8-2;Q96QU8 Q96QU8-2 XPO6 Exportin-6 2 0 HS(0.006)VT(0.026)AAT(0.238)PPPS(0.399)PT(0.346)S(0.32)GES(0.614)GDLLS(0.049)NLLQSPSSAK 66.413 0.00079659 6430600 1634.4 884.25 1052.8 789.15 1046.1 1019 913.54 1168 1146.6 1451.4 TRUE FALSE FALSE 1442.81811 911.4926944 1109.717553 821.334948 968.9312871 999.5642728 948.7755438 1300.960399 1099.336663 1442.767008 1.000035419 0.631767076 0.769159224 0.569277606 0.671578489 0.692810597 0.657608289 0.901712051 0.761964098 1 10.49462262 -7.268667028 24.7423415 1.000016735 0.693929776 0.398583525 0.112571959 160.1801969 548342.4443 0.013220932 0.015287587 5.39E-08 7.268667028 -0.306086959 ASGS(ph)ENEGDYNPGR ddPTM_HeLa_CUDC101_4h_R1 2 ASGSENEGDYNPGR 14 0 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 0 AS(0.003)GS(0.997)ENEGDYNPGR;AS(0.124)GS(0.876)ENEGDY(0.001)NPGR ; 167.92 2.85E-06 61783000 2370.91 1733.62 1539.25 1840.53 1803.79 1550.9 1635.24 1449.56 1675.88 2247.7 TRUE FALSE FALSE 2092.995524 1787.030777 1622.466511 1915.594769 1670.728005 1521.319166 1698.311755 1614.572051 1606.799517 2234.33058 0.936743892 0.799805898 0.726153294 0.857346171 0.747753273 0.680883652 0.760098693 0.722620039 0.719141353 1 11.12562694 -7.268466211 1.241473883 0.981077911 0.744796597 0.098941466 0.094081519 0.11405632 0.339230996 0.009334513 0.011051256 5.39E-08 7.268466211 -0.236281314 SISSS(ph)NPDLAVAPGSVDDEVSR ddPTM_HeLa_CUDC101_4h_R1 2 SISSSNPDLAVAPGSVDDEVSR 22 0 K7EKT0;K7EP20;K7ESB7;Q96HP0 K7EKT0 DOCK6 Dedicator of cytokinesis protein 6 1 0 SIS(0.002)S(0.01)S(0.988)NPDLAVAPGSVDDEVSR;SIS(0.001)S(0.002)S(0.997)NPDLAVAPGSVDDEVSR ; 324.79 5.59E-170 44401000 2384.5 1762.14 1360.26 1835.22 2392.48 2157.9 1730.21 1687.41 1682.12 2055.93 TRUE FALSE FALSE 2104.992525 1816.429445 1433.79977 1910.068204 2215.991517 2116.741653 1796.944779 1879.497934 1612.782302 2043.701237 1.029990336 0.888794023 0.701570144 0.934612246 1.084303066 1.035739283 0.879260015 0.919653959 0.789147784 1 10.99696859 -7.268284103 23.90562722 1.014162106 0.921818575 0 0.119181069 426.6065139 1489947.32 0.017541778 0.020312017 5.39E-08 7.268284103 -0.092343531 NAS(ph)HQTPQGDPLGPQDLKQR ddPTM_HeLa_CUDC101_4h_R1 1 NASHQTPQGDPLGPQDLKQR 20 1 H3BS19;Q96JG9 H3BS19 ZNF469 Zinc finger protein 469 1 0 NAS(0.999)HQT(0.001)PQGDPLGPQDLKQR 49.425 0.036304 7306200 1529.4 1060 1188.6 1031.8 1279.2 1044 977.04 1162 1148 1368.5 TRUE FALSE FALSE 1350.12605 1092.657344 1252.859311 1073.881264 1184.835965 1024.087439 1014.72476 1294.277383 1100.678954 1360.360101 0.992476955 0.803211843 0.920976226 0.789409556 0.870972299 0.752806142 0.745923641 0.951422628 0.809108524 1 10.40977288 -7.268254975 23.97565632 0.996447459 0.830163648 0.110138714 0.086722623 141.3922988 497383.9389 0.010099666 0.011692699 5.39E-08 7.268254975 -0.166283811 TEFLHSQNSLS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 TEFLHSQNSLSPR 13 0 Q96FS4;F6RY50 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 1 0 TEFLHS(0.013)QNS(0.379)LS(0.608)PR 77.191 0.023799 34421000 3004.7 2018.1 2141.3 2161 2446.9 2597.6 2021 1631.4 2494 2570.2 TRUE FALSE FALSE 2652.493621 2080.275269 2257.065155 2249.134921 2266.397062 2548.055108 2098.950647 1817.111982 2391.196264 2554.912336 1.038193594 0.814225694 0.883421761 0.880317845 0.887074296 0.997316061 0.82153529 0.71122283 0.935921061 1 11.31905808 -7.268173635 24.75362627 1.018035867 0.863654099 0.398180973 0.073491084 270.5607702 994519.2373 0.011884612 0.01375426 5.39E-08 7.268173635 -0.154381768 SYLALAT(ph)ET(ph)VDMFHILT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 SYLALATETVDMFHILTK 18 0 O95155;O95155-4;O95155-2;O95155-3 O95155 UBE4B Ubiquitin conjugation factor E4 B 3 0 S(0.062)Y(0.054)LALAT(0.904)ET(0.98)VDMFHILT(1)K 47.05 0.030656 3769900 1847.3 1934.5 2071.4 1780 2051.4 1934.3 1675.6 1524.7 2067.7 1746.5 TRUE FALSE FALSE 1630.762294 1994.099652 2183.38615 1852.596094 1900.072309 1897.40645 1740.228453 1698.265685 1982.468531 1736.11174 0.939318741 1.148600983 1.257629966 1.067094963 1.094441253 1.092905719 1.002371226 0.97820068 1.14190146 1 10.76164409 -7.268036382 24.80716178 0.97134496 1.093776058 0 0.091222686 398.0726352 1496897.53 0.013582858 0.015722794 5.39E-08 7.268036382 0.122431099 AEEQQLPPPLS(ph)PPSPSTPNHR ddPTM_HeLa_CUDC101_4h_R1 2 AEEQQLPPPLSPPSPSTPNHR 21 0 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 AEEQQLPPPLS(0.993)PPS(0.003)PS(0.003)T(0.002)PNHR;AEEQQLPPPLS(0.934)PPS(0.003)PS(0.011)T(0.053)PNHR ; 119.52 6.24E-07 35214000 3522.5 1861.2 1701.71 1744.36 3587.3 2445.94 2295.88 1925.54 3412.2 2667.24 TRUE FALSE FALSE 3109.59789 1918.541366 1793.70959 1815.502541 3322.672026 2399.28777 2384.432861 2144.73569 3271.547672 2651.375138 1.172824564 0.723602382 0.676520483 0.684739973 1.253188196 0.904922029 0.89931931 0.808914461 1.233905993 1 11.37252509 -7.26799719 24.90450738 1.0816116 0.856627326 0.365279756 0.167793107 489.8356235 1860238.842 0.029477939 0.034120828 5.40E-08 7.26799719 -0.224984274 HSQFLGYPITLYLEK ddPTM_HeLa_CUDC101_4h_R1 1 HSQFLGYPITLYLEK 15 0 Q58FF8 Q58FF8 HSP90AB2P Putative heat shock protein HSP 90-beta 2 0 0 124.09 0.00071518 0 219.08 152.89 0 182.67 151.53 0 0 0 0 0 FALSE FALSE TRUE 193.3997745 157.6003597 0 190.1200722 140.3519338 0 0 0 0 0 0 VKESSIIAPAPAEDVDT(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 4 VKESSIIAPAPAEDVDTPPR 20 1 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 0 VKESSIIAPAPAEDVDT(1)PPR;VKESSIIAPAPAEDVDT(1)PPR;VKESSIIAPAPAEDVDT(1)PPR;VKESSIIAPAPAEDVDT(1)PPR ;;; 144.45 2.76E-05 552342000 20821 20541.3 19745.7 19808.8 22458.2 19816.2 18094.3 20576.9 21230.5 19027.3 TRUE FALSE FALSE 18380.39394 21174.15311 20813.21227 20616.68848 20801.50333 19438.239 18792.20321 22919.29112 20355.3698 18914.12477 0.971781362 1.119488919 1.100405782 1.090015464 1.099786724 1.027710203 0.993553941 1.21175531 1.076199404 1 14.2071764 -7.267974784 24.9499623 0.986674531 1.086139275 0.197353069 0.061397458 342.5809535 1307854.993 0.008880214 0.010290736 5.40E-08 7.267974784 0.099464745 RPPS(ph)PDVIVLSDNEQPSSPR ddPTM_HeLa_CUDC101_4h_R1 1 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 RPPS(0.998)PDVIVLS(0.002)DNEQPSSPR 183.27 2.43E-11 25628000 1602.9 1986.3 1804.7 1818.4 2196.4 1712.8 1729.3 1795.5 1380.7 1563.5 TRUE FALSE FALSE 1415.010492 2047.495549 1902.267541 1892.562212 2034.375948 1680.131194 1795.99968 1999.892462 1323.786962 1554.200232 0.910442852 1.317394957 1.223952681 1.2177081 1.308953573 1.081026214 1.155578054 1.286766287 0.851748014 1 10.60195667 -7.267907679 24.98423076 0.957709121 1.221590702 0.761585545 0.077746818 184.5909478 712993.0643 0.012523271 0.014499115 5.40E-08 7.267907679 0.263881581 VEVPS(ph)LTGQSIS(ph)TRTHTQPSPK ddPTM_HeLa_CUDC101_4h_R1 1 VEVPSLTGQSISTRTHTQPSPK 22 1 Q96P11-4 Q96P11-4 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase 2 0 VEVPS(0.475)LT(0.475)GQS(0.066)IS(0.699)T(0.091)RT(0.09)HT(0.09)QPS(0.013)PK 46.027 0.020718 7447200 1538.2 3077.7 3545.4 3670.4 1489.3 1984.6 1683.6 2434.3 2107.1 2115.1 TRUE FALSE FALSE 1357.894528 3172.520289 3737.075048 3820.094777 1379.437306 1946.747062 1748.537016 2711.410872 2020.244446 2102.519291 0.64584165 1.50891376 1.777427234 1.816913068 0.656087824 0.925911629 0.831638988 1.289600949 0.960868447 1 11.03790332 -7.267786467 24.96609565 0.832758558 1.247209966 0.184952798 0.371571659 642.5364026 2527395.977 0.070177093 0.08129975 5.40E-08 7.267786467 0.414451408 PAPAVGEAEDKENQQATSGPNQPS(ph)VR ddPTM_HeLa_CUDC101_4h_R1 3 PAPAVGEAEDKENQQATSGPNQPSVR 26 1 P16989-2;P16989-3;P16989 P16989-2 YBX3 Y-box-binding protein 3 1 0 PAPAVGEAEDKENQQATSGPNQPS(1)VR;PAPAVGEAEDKENQQAT(0.012)S(0.012)GPNQPS(0.976)VR;PAPAVGEAEDKENQQATSGPNQPS(1)VR ;; 147.17 4.01E-11 31770000 3986.3 2450.05 2102.78 2923.82 2168.78 2434.21 3142.63 3451.86 2484.34 3408.28 TRUE FALSE FALSE 3519.031957 2525.533136 2216.462647 3043.066017 2008.79342 2387.7815 3263.842292 3844.80579 2381.934454 3388.007399 1.038673044 0.745433182 0.654208326 0.898187536 0.592912938 0.704774582 0.963351583 1.134828038 0.703048776 1 11.72622131 -7.267771889 24.40556364 1.018262276 0.803635519 0 0.180039149 337.5774465 1301025.152 0.026064677 0.030198417 5.40E-08 7.267771889 -0.214626758 SSDVHS(ph)S(ph)GS(ph)SDAHMDAS(ph)GPSDSDMPS(ph)RTR ddPTM_HeLa_CUDC101_4h_R1 1 SSDVHSSGSSDAHMDASGPSDSDMPSRTR 29 1 O15042-2;O15042;E7ET15;E7EW00;H0Y8D9;C9J5L1 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 5 0 S(0.018)S(0.018)DVHS(0.895)S(0.895)GS(0.895)S(0.284)DAHMDAS(0.751)GPS(0.256)DS(0.407)DMPS(0.29)RT(0.29)R 48.685 0.0018143 0 386.01 170 255.13 201.72 130.11 201.47 179.77 245.36 150.45 333.35 TRUE FALSE FALSE 340.762493 175.2374985 268.9230995 209.9470135 120.5120445 197.6272954 186.7037891 273.2907906 144.2483873 331.3672194 1.028353057 0.528831726 0.811556134 0.633578101 0.36368125 0.596399655 0.563434698 0.824736952 0.435312786 1 8.37228708 -7.267531618 24.84787981 1.013388953 0.612896358 0 0.22163907 180.0934211 734529.8694 0.020980708 0.02431957 5.40E-08 7.267531618 -0.400492595 ADVGRLS(ph)PEVK ddPTM_HeLa_CUDC101_4h_R1 1 ADVGRLSPEVK 11 1 P49815;X5D2U8;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4;H3BQK4;A0A2R8Y670 P49815 TSC2 Tuberin 1 0 ADVGRLS(1)PEVK 65.895 0.03897 117090000 11961 7975.1 8144.4 8612.3 8023.3 8953.1 8233.4 5521.1 7992.4 10852 TRUE FALSE FALSE 10558.94971 8220.803378 8584.710899 8963.54682 7431.437144 8782.334534 8550.964996 6149.599707 7662.949889 10787.45182 0.978817786 0.762070924 0.79580526 0.830923463 0.688896439 0.81412503 0.792677005 0.570069726 0.710357739 1 13.3970665 -7.26742029 4.810666463 0.990844743 0.756244898 0.12042007 0.113930636 0.072846054 4.885015558 0.011568928 0.013630911 5.40E-08 7.26742029 -0.234599845 SPQGPSPVLAEDS(ph)EGEG ddPTM_HeLa_CUDC101_4h_R1 1 SPQGPSPVLAEDSEGEG 17 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 1 0 SPQGPSPVLAEDS(1)EGEG 71.548 0.023533 8958700 2728.5 2888.1 2516.3 2632.5 3569.2 3052.6 2726.4 2287.3 2423.5 2485.2 TRUE FALSE FALSE 2408.669366 2977.078938 2652.338789 2739.864729 3305.907227 2994.376741 2831.558161 2547.676986 2323.602304 2470.41792 0.975004815 1.205091217 1.073639714 1.109069322 1.338197558 1.212093192 1.14618589 1.031273683 0.940570535 1 11.27053941 -7.26739776 24.79203955 0.988196714 1.162532209 0.525186478 0.081218 261.0812398 1086322.758 0.013844391 0.016054033 5.40E-08 7.26739776 0.174335495 VDSLVSLS(ph)EEDLESDQREHR ddPTM_HeLa_CUDC101_4h_R1 2 VDSLVSLSEEDLESDQREHR 20 1 Q12802-4;Q12802;Q12802-2;A0A087WTD7;A8MYJ1;A0A087WY36;H0YMW2;H0YLH1 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 VDS(0.003)LVS(0.035)LS(0.963)EEDLESDQREHR;VDSLVS(0.006)LS(0.994)EEDLESDQREHR ; 96.096 0.00053306 5515100 3028.75 3377.7 2755.67 3076.26 4260.9 3577.8 2805.79 3105.3 3271.8 2770.97 TRUE FALSE FALSE 2673.724516 3481.762933 2904.649856 3201.72318 3946.581896 3509.559426 2914.01026 3458.7948 3136.935019 2754.488147 0.97067926 1.264032643 1.054515286 1.162365931 1.432782312 1.274123989 1.057913523 1.255694203 1.138844987 1 11.42756854 -7.267344331 24.80288146 0.98615409 1.210999413 0.308261913 0.114898216 262.7074135 1103462.08 0.017988442 0.02086231 5.40E-08 7.267344331 0.224845323 SSLGQS(ph)ASET(ph)EEDTVSVSKK ddPTM_HeLa_CUDC101_4h_R1 1 SSLGQSASETEEDTVSVSKK 20 1 E9PPJ0;Q13435;E9PJ04;H0YCG1 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 2 0 S(0.005)S(0.006)LGQS(0.869)AS(0.478)ET(0.64)EEDT(0.002)VSVSKK 78.674 0.0049969 104300000 4867.3 4734.2 4212.3 4577 5452.2 4277.2 4397.8 4730.7 5846.7 4548.6 TRUE FALSE FALSE 4296.762472 4880.055091 4440.02968 4763.669843 5050.002068 4195.619536 4567.424619 5269.223766 5605.696551 4521.544725 0.950286403 1.079289355 0.981971859 1.053549203 1.116875399 0.927917292 1.010146951 1.165359205 1.239774655 1 12.14260002 -7.267287276 24.91355965 0.976524135 1.042145712 0 0.105123308 572.8015975 2440278.162 0.010682251 0.012375424 5.40E-08 7.267287276 0.065621577 NPSDSAVHS(ph)PFTK ddPTM_HeLa_CUDC101_4h_R1 4 NPSDSAVHSPFTK 13 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 NPSDSAVHS(0.998)PFT(0.002)K;NPSDSAVHS(1)PFTK;NPSDSAVHS(0.999)PFT(0.001)K;NPSDS(0.004)AVHS(0.992)PFT(0.004)K ;;; 211.7 3.53E-41 128140000 15874.2 9215.4 10081.9 8592.3 12684.1 11980.3 10021.7 6594.2 13497.2 13999.8 TRUE FALSE FALSE 14013.45034 9499.315551 10626.95801 8942.731133 11748.41921 11751.79574 10408.24033 7344.857073 12940.8397 13916.52857 1.006964508 0.682592322 0.763621327 0.642597835 0.844206165 0.844448792 0.74790493 0.527779398 0.929889925 1 13.76451176 -7.267280848 24.55624769 1.003288804 0.73085505 0.619263931 0.091589529 153.9350919 647108.1404 0.014791089 0.017157669 5.40E-08 7.267280848 -0.272433754 EGSTQQLQT(ph)TSPKPLVQQPILPVVK ddPTM_HeLa_CUDC101_4h_R1 1 EGSTQQLQTTSPKPLVQQPILPVVK 25 1 A0A087X0H9;Q5T8P6-3;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 EGS(0.002)T(0.005)QQLQT(0.361)T(0.361)S(0.271)PKPLVQQPILPVVK 71.295 0.00057562 26388000 1471.2 1034.4 1149.2 1021.5 1077.4 1098.5 999.59 1182.2 1447.7 1292.9 TRUE FALSE FALSE 1298.748166 1066.268638 1211.329228 1063.161185 997.9223485 1077.547943 1038.144521 1316.776869 1388.025193 1285.209773 1.010533995 0.829645603 0.942514797 0.827227747 0.776466511 0.83842184 0.807762704 1.024561824 1.07999894 1 10.32778814 -7.26717118 24.83782595 1.00497439 0.85893064 0.51971603 0.071976474 244.9345912 1061382.426 0.01099282 0.012756055 5.41E-08 7.26717118 -0.14604375 WVSELS(ph)YVEEK ddPTM_HeLa_CUDC101_4h_R1 2 WVSELSYVEEK 11 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154;Q15154-4;Q15154-2 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 WVSELS(1)YVEEK;WVSELS(1)YVEEK ; 168.82 1.01E-06 5634100 3862.1 2049.02 2423.26 1949.16 2349.5 2624.79 2583.37 2690.3 2420.94 3040.2 TRUE FALSE FALSE 3409.390493 2112.147878 2554.268766 2028.65517 2176.182066 2574.726504 2683.011446 2996.552877 2321.147829 3022.116755 1.128146517 0.698896849 0.845191954 0.671269621 0.720085371 0.851961295 0.887792122 0.991541069 0.768053658 1 11.56134368 -7.267000527 24.99412245 1.060513636 0.806789045 0.119528038 0.132477493 241.4065736 1084980.214 0.01763229 0.020463257 5.41E-08 7.267000527 -0.25372459 LPSPEPSMS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 LPSPEPSMSPK 11 0 O43303-2;O43303 O43303-2 CCP110 Centriolar coiled-coil protein of 110 kDa 1 0 LPSPEPS(0.009)MS(0.991)PK 95.428 0.018241 29162000 2234 2384.8 2550.8 2194.8 2354.4 2594.7 2121.8 2225 2202.1 1969.2 TRUE FALSE FALSE 1972.133907 2458.272861 2688.703964 2284.313431 2180.720603 2545.210421 2203.638537 2478.285006 2111.328506 1957.487111 1.007482448 1.255830931 1.373548745 1.166962182 1.114040849 1.30024377 1.125748683 1.266054317 1.078591269 1 10.93478709 -7.266867165 24.10141959 1.003533369 1.226455105 0.572203989 0.078417008 115.6962314 513734.345 0.012432812 0.014441503 5.41E-08 7.266867165 0.222921736 S(ph)QPKAPPVDDAEVDELVLQTK ddPTM_HeLa_CUDC101_4h_R1 2 SQPKAPPVDDAEVDELVLQTK 21 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 S(1)QPKAPPVDDAEVDELVLQTK;S(1)QPKAPPVDDAEVDELVLQTK ; 100.17 0.00012871 17254200 3341 3672 3843.4 3793.3 3749 4149.6 3400.6 1557.24 3730 3237 TRUE FALSE FALSE 2949.373045 3785.129968 4051.18583 3948.00717 3472.443739 4070.453294 3531.762281 1734.509907 3576.247821 3217.74618 0.916595928 1.176329566 1.259013484 1.226947978 1.079154024 1.26500136 1.097588835 0.539044974 1.111413897 1 11.65183481 -7.266758352 24.71524382 0.960614743 1.109882552 0.01162385 0.20435302 638.9198881 2968811.199 0.033133128 0.038493619 5.41E-08 7.266758352 0.149267809 T(ph)MGTERS(ph)RGGKR ddPTM_HeLa_CUDC101_4h_R1 1 TMGTERSRGGKR 12 3 A8MZ25 A8MZ25 Putative uncharacterized protein FLJ38767 2 0 T(0.994)MGT(0.009)ERS(0.997)RGGKR 51.939 0.037136 9050100 817.87 900.6 888.02 820.03 695 1101.2 634.25 938 850.5 809.17 TRUE FALSE FALSE 722.0005184 928.3464185 936.0290473 853.4743679 643.7312346 1080.196445 658.713235 1044.778128 815.44203 804.3570209 0.897612005 1.154147219 1.163698486 1.061064112 0.800305359 1.34293158 0.818931417 1.298898501 1.013781205 1 9.651692186 -7.266715402 24.4488738 0.951650114 1.081033114 0.092015972 0.168895712 494.3644422 2290859.054 0.02598743 0.030186642 5.41E-08 7.266715402 0.129383 S(ph)PPPTVDESADNAFHLGPLR ddPTM_HeLa_CUDC101_4h_R1 2 SPPPTVDESADNAFHLGPLR 20 0 Q96JK2-2;Q96JK2-3;Q96JK2 Q96JK2-2 DCAF5 DDB1- and CUL4-associated factor 5 1 0 S(0.993)PPPT(0.007)VDESADNAFHLGPLR;S(0.982)PPPT(0.018)VDESADNAFHLGPLR ; 168.4 6.18E-08 11706500 4213.2 2760.3 2643.4 2555.5 2763.4 3475.4 2815.4 1973.51 3342.4 3877.3 TRUE FALSE FALSE 3719.335083 2845.341571 2786.3102 2659.724336 2559.549487 3409.112535 2923.990921 2198.166401 3204.624857 3854.237647 0.964998898 0.73823719 0.722921225 0.69007793 0.664087096 0.884510206 0.758643132 0.570324563 0.831454921 1 11.91222981 -7.266429469 3.925312272 0.985118452 0.721501167 0.527381191 0.088860903 0.08271937 2.919309889 0.012729389 0.015026458 5.41E-08 7.266429469 -0.263617285 TADSVS(ph)PLEPPTKDK ddPTM_HeLa_CUDC101_4h_R1 1 TADSVSPLEPPTKDK 15 1 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-6 SYNRG Synergin gamma 1 0 T(0.032)ADS(0.224)VS(0.743)PLEPPTKDK 82.709 0.009775 19702000 2712.5 2935.6 2871.9 2796.5 3089.8 3002.5 2681.9 2726.5 2619.2 2440.3 TRUE FALSE FALSE 2394.544862 3026.042356 3027.163601 2910.553358 2861.87161 2945.232315 2785.341781 3036.873739 2511.235467 2425.784987 0.987121643 1.247448711 1.247910931 1.199839793 1.179771342 1.214135767 1.148222862 1.251913816 1.035225909 1 11.24423597 -7.266418665 24.9994144 0.993918549 1.209908093 0.886630703 0.033526131 75.95417596 381341.3499 0.005164992 0.006005328 5.41E-08 7.266418665 0.215989544 HSTSGTDEGEDGDEPDDGSNDVVDLLPR ddPTM_HeLa_CUDC101_4h_R1 1 HSTSGTDEGEDGDEPDDGSNDVVDLLPR 28 0 Q14008-2;Q14008;Q14008-3 Q14008-2 CKAP5 Cytoskeleton-associated protein 5 0 0 152.03 3.58E-16 3267800 382.97 227.58 180.05 217.06 288.49 353.87 268.16 154.39 380.16 276.69 FALSE FALSE TRUE 338.0788371 234.5914701 189.7840476 225.912645 267.2086675 347.1205193 278.503021 171.9651335 364.4896439 275.0442356 1.229179868 0.852922693 0.690012816 0.821368405 0.971511608 1.262053424 1.012575379 0.625227186 1.325203719 1 8.103519857 -7.248561658 24.41741755 1.108223828 0.902482155 0.317275155 0.187256311 689.0466359 1306500.553 0.032176491 0.039262883 5.64E-08 7.248561658 -0.205741673 IEEEEEVEQELLSHS(ph)WGR ddPTM_HeLa_CUDC101_4h_R1 3 IEEEEEVEQELLSHSWGR 18 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 IEEEEEVEQELLS(0.372)HS(0.628)WGR;IEEEEEVEQELLS(0.007)HS(0.993)WGR;IEEEEEVEQELLS(0.318)HS(0.682)WGR ;; 200.89 3.72E-17 13808500 4775.16 5314.99 4574.21 5017.59 6358.55 5648.31 4757.92 3839.88 4605.66 4578.16 TRUE FALSE FALSE 4215.422983 5478.738542 4821.505629 5222.229008 5889.492435 5540.577897 4941.434568 4276.996418 4415.812745 4550.928901 0.926277487 1.203872585 1.059455275 1.147508371 1.29412974 1.217460879 1.085807903 0.939807347 0.970310203 1 12.15194533 -7.266361381 24.98956571 0.965186589 1.14032648 0.412316032 0.092826369 292.6945758 1486042.096 0.016478645 0.019158223 5.42E-08 7.266361381 0.175139891 KTGS(ph)YGALAEITASK ddPTM_HeLa_CUDC101_4h_R1 4 KTGSYGALAEITASK 15 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIS4;H0YHI8;A0A3B3ISH4;F8VZN8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 KT(0.001)GS(0.716)YGALAEIT(0.282)AS(0.001)K;KT(0.21)GS(0.79)YGALAEITASK;KT(0.254)GS(0.746)YGALAEITASK;KT(0.281)GS(0.714)Y(0.005)GALAEITASK ;;; 185.55 1.72E-10 919592800 16450.2 15531.8 15592.5 14230.1 18857 15929.9 15238.3 12081.1 13837.5 14860.6 TRUE FALSE FALSE 14521.93249 16010.31635 16435.47771 14810.46499 17465.95668 15626.0637 15826.04634 13456.36359 13267.11239 14772.20849 0.983057645 1.083813321 1.112594486 1.002589761 1.182352435 1.057801459 1.071339221 0.910924294 0.898112994 1 13.85059791 -7.266285116 24.28637179 0.991999442 1.065035474 0.250713642 0.072854759 307.0728031 1539019.156 0.010677973 0.012425804 5.42E-08 7.266285116 0.073036032 MPGGPKPGGGPGLST(ph)PGGHPKPPHR ddPTM_HeLa_CUDC101_4h_R1 1 MPGGPKPGGGPGLSTPGGHPKPPHR 25 2 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 MPGGPKPGGGPGLS(0.233)T(0.767)PGGHPKPPHR 47.822 0.016645 38420000 5042.9 2096.7 1823.6 2020.5 4995 3520.4 3122.9 1742.2 3578.7 3482.2 TRUE FALSE FALSE 4451.778907 2161.296842 1922.189332 2102.904723 4626.528801 3453.254235 3243.351299 1940.525006 3431.184471 3461.48772 1.286088314 0.624383796 0.555307281 0.607514714 1.336572357 0.997621403 0.936981888 0.560604331 0.9912456 1 11.75717651 -7.266263329 24.93203293 1.135097259 0.818882883 0.221395257 0.243788118 421.7970336 2180006.286 0.044669919 0.051951452 5.42E-08 7.266263329 -0.316214376 KMSGGS(ph)TMSSGGGNTNNSNSK ddPTM_HeLa_CUDC101_4h_R1 1 KMSGGSTMSSGGGNTNNSNSK 21 1 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 KMS(0.387)GGS(0.538)T(0.075)MSSGGGNTNNSNSK 107.45 2.03E-05 14011000 2809.6 1993.6 2661.3 2546.2 2969.4 2075 2169.2 1749.5 2527.1 2967.4 TRUE FALSE FALSE 2480.262947 2055.020453 2805.177928 2650.045042 2750.353278 2035.422832 2252.866771 1948.656008 2422.931868 2949.749773 0.840838423 0.696676197 0.950988438 0.898396558 0.932402234 0.690032372 0.763748434 0.660617394 0.82140251 1 11.52637686 -7.266219076 0.038190851 1.720976714 2.11E-21 0.190955151 0.102214783 46.1787872 1.524786556 33.77807888 34.40269008 5.42E-08 7.266219076 -1.720976714 GDAPVDKVELSEDSPNS(ph)EQDLEK ddPTM_HeLa_CUDC101_4h_R1 1 GDAPVDKVELSEDSPNSEQDLEK 23 1 Q5T5P2;Q5T5P2-2;Q5T5P2-7;Q5T5P2-3;Q5T5P2-9;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 GDAPVDKVELS(0.004)EDS(0.265)PNS(0.731)EQDLEK 111.72 4.03E-06 10123000 1679.1 1088.9 1047.1 1146.5 1302.4 1264.8 1147.8 1209.2 1375.5 1409.7 TRUE FALSE FALSE 1482.278443 1122.447718 1103.709393 1193.259226 1206.324547 1240.676047 1192.07103 1346.85044 1318.801308 1401.315042 1.057776731 0.800995982 0.787624025 0.851528165 0.860851779 0.885365539 0.85068025 0.961133221 0.941116928 1 10.45256562 -7.266215728 24.99987597 1.027283459 0.855022562 0.584211685 0.053670806 149.8482077 784318.5892 0.008373101 0.009742945 5.42E-08 7.266215728 -0.172260896 LHSYS(ph)SPSTK ddPTM_HeLa_CUDC101_4h_R1 4 LHSYSSPSTK 10 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 LHSYS(0.622)S(0.372)PS(0.005)T(0.001)K;LHSYS(0.629)S(0.367)PS(0.003)TK;LHS(0.002)YS(0.744)S(0.245)PS(0.008)T(0.002)K;LHS(0.002)YS(0.695)S(0.302)PSTK ;;; 94.191 0.014467 314208000 30972.1 22011.3 22187.5 21206.1 29697.1 24297.5 23793 17831 28060.3 26579.5 TRUE FALSE FALSE 27341.59739 22689.44206 23387.02336 22070.97642 27506.4041 23834.06567 24710.70398 19860.80896 26903.64256 26421.40395 1.034827575 0.858752325 0.885154453 0.835344574 1.041065197 0.902074156 0.935253252 0.75169393 1.018251816 1 14.68941951 -7.266050097 24.94805881 1.016446357 0.89334251 0.420745652 0.069969969 268.5951184 1453334.877 0.011458745 0.013331841 5.42E-08 7.266050097 -0.123103846 SLLGLDSGELQSGPESSS(ph)SPGVHVR ddPTM_HeLa_CUDC101_4h_R1 2 SLLGLDSGELQSGPESSSSPGVHVR 25 0 P49815;X5D2U8;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4 P49815 TSC2 Tuberin 1 0 SLLGLDSGELQSGPES(0.006)S(0.016)S(0.593)S(0.385)PGVHVR;SLLGLDSGELQSGPES(0.083)S(0.222)S(0.596)S(0.099)PGVHVR ; 117.51 1.34E-08 17957400 3966.2 1873.78 1702.01 1555.5 3995.1 3226.8 2480 1618.51 3050.3 2791.2 TRUE FALSE FALSE 3501.288048 1931.508941 1794.025809 1618.940013 3700.389432 3165.254166 2575.654431 1802.754636 2924.565343 2774.597818 1.261908312 0.69614015 0.646589497 0.583486372 1.333666958 1.140797468 0.928298297 0.649735477 1.054050185 1 11.43806295 -7.266046722 24.9730657 1.123678923 0.868037741 0.193845647 0.232659684 497.1539648 2694706.377 0.043387173 0.050485864 5.42E-08 7.266046722 -0.255641183 SMDAMSS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 1 SMDAMSSPTK 10 0 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;H0Y390;Q9UPN3-5;H3BPE1;H3BQK9 A0A590UJG2;H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 SMDAMS(0.065)S(0.922)PT(0.012)K 138.22 0.0014461 24499000 7693.5 5146.7 5842.1 5471.9 5113.8 5634 5352.4 5027.1 6207 6721.8 TRUE FALSE FALSE 6791.679593 5305.263727 6157.941597 5695.067734 4736.565162 5526.540837 5558.843861 5599.364744 5951.144833 6681.818435 1.016441805 0.793985017 0.921596667 0.85232303 0.708873671 0.827101318 0.831935784 0.838000134 0.890647492 1 12.70602507 -7.265823481 24.96827935 1.007764189 0.825510665 0.503604063 0.062129852 131.5438162 749165.4843 0.008571004 0.009983752 5.42E-08 7.265823481 -0.182253524 AEEGDADEKLFEES(ph)DDKEDEDADGK ddPTM_HeLa_CUDC101_4h_R1 2 AEEGDADEKLFEESDDKEDEDADGK 25 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 AEEGDADEKLFEES(1)DDKEDEDADGK;AEEGDADEKLFEES(1)DDKEDEDADGK ; 53.96 0.0069977 34673000 7306.1 6211 5892.8 6708.7 5049.2 5626.4 5693.1 5965.8 7156.9 7056 TRUE FALSE FALSE 6449.690033 6402.353548 6211.382593 6982.309783 4676.730575 5519.085794 5912.684774 6644.922557 6861.889553 7014.030598 0.919541189 0.912792361 0.885565369 0.99547752 0.666767918 0.786863661 0.842979609 0.947375758 0.978309042 1 12.77602801 -7.265712263 0.470839628 0.990433605 0.827129244 0.306130684 0.082579822 0.764939571 0.418680093 0.036592024 0.0429148 5.42E-08 7.265712263 -0.163304361 HTEMITTLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 HTEMITTLKK 10 1 O75475 O75475 PSIP1 PC4 and SFRS1-interacting protein 0 1 ; HTEMITTLK(1)K;HTEMITTLK(1)K 83 0.0089544 896340 2136.05 1382.63 1449.05 1308.89 1831.1 1967.07 1822.97 1712.04 1948.35 1394.48 FALSE TRUE FALSE 1885.665457 1425.227191 1527.390026 1362.272192 1696.023401 1929.551417 1893.282564 1906.931713 1868.038188 1386.185571 1.360326854 1.028164786 1.101865478 0.982748789 1.223518291 1.391986367 1.365821866 1.375668419 1.34761047 1 10.43690469 -1.000028999 0.023487528 4.80E-09 2.88119702 0.076676398 0.156852876 2411.637081 4.403623547 190.9955417 379.7012558 0.099993323 1.000028999 2.881197016 RIDFT(ph)PVSPAPSPTR ddPTM_HeLa_CUDC101_4h_R1 1 RIDFTPVSPAPSPTR 15 1 G1UD79;Q7Z309-3;Q7Z309-4;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 RIDFT(0.594)PVS(0.406)PAPSPTR 160.79 0.00028195 11771000 1139.9 1306.5 1270.2 1431.9 1258.9 1078.2 1091.8 1161.6 1261.6 1142 TRUE FALSE FALSE 1006.28265 1346.751716 1338.870854 1490.299071 1166.033455 1057.635131 1133.911092 1293.831849 1209.596314 1135.207333 0.886430717 1.186348676 1.179406453 1.312799017 1.027154618 0.93166693 0.998858146 1.139731757 1.065528982 1 10.1487401 -7.265699074 24.99408064 0.94637006 1.106837768 0.191310837 0.111557981 345.6051174 2027859.572 0.020047449 0.023360658 5.42E-08 7.265699074 0.160467708 HTGCCGDNDPIDVCEIGSK ddPTM_HeLa_CUDC101_4h_R1 1 HTGCCGDNDPIDVCEIGSK 19 0 Q15181;Q5SQT6 Q15181 PPA1 Inorganic pyrophosphatase 0 0 81.854 0.0052925 7346300 984.79 982.01 1247.5 843.14 1031.4 978.16 915.7 914.84 961.3 247.23 FALSE FALSE TRUE 869.354409 1012.264564 1314.943623 877.5268936 955.3156768 959.5032277 951.0188557 1018.981688 921.6748071 245.759465 3.537419847 4.118924023 5.35053095 3.570673844 3.887197903 3.904237128 3.869714055 4.146256128 3.750312556 1 7.94110317 -8.736023276 0.647222591 0.950903669 4.123791515 0.145255485 0.949081902 0.217434642 0.1740124 0.353522401 0.121049279 1.84E-09 8.736023276 3.172887846 DSDQVAQS(ph)DGEESPAAEEQLLGEHIKEEK ddPTM_HeLa_CUDC101_4h_R1 2 DSDQVAQSDGEESPAAEEQLLGEHIKEEK 29 1 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H0Y8V7 D6REX3 SEC31A Protein transport protein Sec31A 1 0 DS(0.022)DQVAQS(0.978)DGEESPAAEEQLLGEHIKEEK;DS(0.004)DQVAQS(0.98)DGEES(0.016)PAAEEQLLGEHIKEEK ; 123.86 5.31E-14 59161000 10701.8 8298 7824.5 7630.9 7594.8 8618.2 8965.8 7466.1 8707.7 9950.5 TRUE FALSE FALSE 9447.351227 8553.651544 8247.516138 7942.121086 7034.546735 8453.822194 9311.613909 8316.010645 8348.76492 9891.313983 0.955115897 0.864763929 0.833814006 0.802938932 0.711184252 0.854671301 0.941393017 0.840738719 0.844050137 1 13.27194647 -7.265636623 1.778253318 0.983345251 0.829498485 0.225042565 0.0692039 0.177926553 1.065655307 0.010899176 0.01290692 5.42E-08 7.265636623 -0.153846766 QLHLEGASLELS(ph)DDDTESK ddPTM_HeLa_CUDC101_4h_R1 4 QLHLEGASLELSDDDTESK 19 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 1 0 QLHLEGASLELS(0.998)DDDT(0.002)ESK;QLHLEGASLELS(0.999)DDDT(0.001)ESK;QLHLEGASLELS(1)DDDTESK;QLHLEGASLELS(0.999)DDDT(0.001)ESK ;;; 182.13 1.96E-11 428259000 19388.5 12352.6 11457.9 11329.9 16112.8 14770.6 13467.7 11934.6 16679.6 16845.4 TRUE FALSE FALSE 17115.80942 12733.16896 12077.34873 11791.98229 14924.19085 14488.87541 13987.1537 13293.18662 15992.05983 16745.20281 1.022132106 0.760406972 0.721242309 0.704200625 0.891251722 0.865255296 0.83529318 0.79385044 0.955023359 1 14.03146023 -7.265602375 24.87804637 1.010451277 0.797374797 0.701697902 0.058337807 123.4475586 737720.8441 0.01033409 0.012041276 5.42E-08 7.265602375 -0.21307648 DSGYIDCWDSERSDSLS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 DSGYIDCWDSERSDSLSPPR 20 1 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 DSGYIDCWDSERS(0.01)DS(0.007)LS(0.982)PPR 95.51 0.00068106 25347000 982.23 1149.7 1261.8 957.1 1572.5 1093.3 1180.2 1393.9 1447.8 767.42 TRUE FALSE FALSE 867.0944884 1185.120894 1330.016725 996.1346749 1456.499808 1072.447124 1225.720709 1552.575942 1388.121071 762.8553517 1.136643384 1.55353291 1.74347171 1.305797584 1.909273894 1.405832864 1.606753766 2.035216687 1.819638635 1 9.575265717 -7.265549196 2.556633673 1.055037087 1.650589448 0.036735669 0.31523663 0.122635641 1.538644065 0.033915476 0.040120698 5.43E-08 7.265549196 0.595552362 HTGYVIELQHVVK ddPTM_HeLa_CUDC101_4h_R1 1 HTGYVIELQHVVK 13 0 P47897;P47897-2;A0A1B0GVU9;B4DDN1;A0A0U1RRC8;H7C0R3;A0A0U1RQX9;A0A0U1RQX5 P47897 QARS Glutamine--tRNA ligase 0 0 82.489 0.012847 636460 579.04 664.65 628.25 599.18 780.71 568.18 606.31 819.69 676.44 669.45 FALSE FALSE TRUE 511.165809 685.1270787 662.2150954 623.6171503 723.1185787 557.3429132 629.6955798 913.0001963 648.5568569 665.4680816 0.768129717 1.029541608 0.995111732 0.937110535 1.086631498 0.837520128 0.946244602 1.371966923 0.974587474 1 9.37822566 -4.264010273 5.061413059 0.91934674 1.392708287 0.635508512 0.092379278 0.085572795 6.978948684 0.0153182 0.140809737 5.44E-05 4.264010273 0.473361547 HTIPEEETHR ddPTM_HeLa_CUDC101_4h_R1 1 HTIPEEETHR 10 0 K7EQ37;K7EN81;Q70J99-2;Q70J99;Q70J99-3 K7EQ37 UNC13D Protein unc-13 homolog D 0 0 125.57 0.0026294 1759200 1604.5 1008.9 941.4 1564.8 1423.3 1349.3 1164.2 1045.2 1448.3 1427.7 FALSE FALSE TRUE 1416.422942 1039.983013 992.2949316 1628.619308 1318.305995 1323.564351 1209.103584 1164.181343 1388.600461 1419.207977 0.998037613 0.732791127 0.699189229 1.147555069 0.928902611 0.932607745 0.851956587 0.820303551 0.978433382 1 10.47087031 -7.442301988 24.99998709 0.999136855 0.879676867 0.177032439 0.116558044 128.7121164 39933.73042 0.020195707 0.023094589 3.61E-08 7.442301988 -0.119459988 SLS(ph)NSNPDISGTPTSPDDEVR ddPTM_HeLa_CUDC101_4h_R1 1 SLSNSNPDISGTPTSPDDEVR 21 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 SLS(0.497)NS(0.497)NPDIS(0.006)GT(0.001)PTSPDDEVR 322.94 1.11E-169 190840000 1441.5 1067.8 1129.6 1172.7 1066.2 1301.6 1151.2 1025.2 1282.9 1175.7 TRUE FALSE FALSE 1272.529555 1100.697652 1190.669593 1220.527775 987.5485502 1276.774149 1195.60217 1141.904624 1230.018319 1168.706884 1.088835509 0.941808136 1.018792316 1.044340366 0.844992499 1.092467381 1.023012858 0.977066739 1.052460917 1 10.19069743 -7.265527678 24.96376975 1.0419501 0.994271012 0.127896504 0.065557458 620.235789 3787240.108 0.011336144 0.013210271 5.43E-08 7.265527678 -0.047679087 QGPSPVS(ph)PNALDR ddPTM_HeLa_CUDC101_4h_R1 2 QGPSPVSPNALDR 13 0 H0Y3A3;A0A3B3ITG3;Q5VWQ8-3;Q5VWQ8-4;Q5VWQ8-2;Q5VWQ8-5;Q5VWQ8 H0Y3A3 DAB2IP Disabled homolog 2-interacting protein 1 0 QGPS(0.407)PVS(0.593)PNALDR;QGPS(0.144)PVS(0.856)PNALDR ; 97.2 0.011526 33846000 2006.67 1398.55 1295.67 1354.46 1795.17 1753.26 1575.76 1359.69 1673.85 1626.35 TRUE FALSE FALSE 1771.451185 1441.637668 1365.717839 1409.700733 1662.743886 1719.819487 1636.537591 1514.471614 1604.853195 1616.676398 1.095736405 0.891729272 0.844768836 0.871974586 1.028495182 1.063799465 1.0122852 0.936780926 0.992686722 1 10.65881522 -7.265389248 24.99476104 1.045208858 0.952723988 0.196145077 0.071506185 387.0867315 2449479.342 0.013874936 0.016174869 5.43E-08 7.265389248 -0.09248487 EVDKT(ph)PPPQPPLISSMDSISQK ddPTM_HeLa_CUDC101_4h_R1 1 EVDKTPPPQPPLISSMDSISQK 22 1 Q92625;A0A3B3ISP1;A0A3B3ITU5 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 EVDKT(0.998)PPPQPPLIS(0.001)SMDSISQK 60.133 0.016656 22887000 1084.3 1234.1 1209.1 1092.8 1181.5 1208.4 969.28 1196.8 1364.4 1114 TRUE FALSE FALSE 957.1999977 1272.121158 1274.467603 1137.369107 1094.343099 1185.351783 1006.665454 1333.038874 1308.158855 1107.373878 0.864387373 1.148772951 1.150891879 1.027086813 0.988232719 1.070416963 0.909056529 1.203783925 1.181316338 1 10.11292668 -7.265310588 24.99903629 0.935960705 1.063092701 0 0.116167216 311.3376611 2010515.096 0.015557508 0.018135113 5.43E-08 7.265310588 0.127131996 HTNYTMEHIR ddPTM_HeLa_CUDC101_4h_R1 2 HTNYTMEHIR 10 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144;H0YJW3;P12814-4;P12814-3;P12814;P12814-2;H9KV75;A0A494C1A0;P35609;P35609-2;A0A494C060;F6THM6;H7C5W8;H0YJ11 O43707;P12814-4 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 0 0 ; ; 77.288 0.020651 2003630 565.2 136.49 267.321 389.2 539.25 442.84 308.139 240.51 313.67 154.21 FALSE FALSE TRUE 498.9481128 140.6950951 281.7731819 405.0732583 499.4706018 434.3935648 320.0240244 267.8886862 300.7403898 153.2927521 3.254870867 0.917819618 1.838137668 2.64248148 3.258279306 2.833751492 2.087665726 1.747562638 1.961869598 1 7.260145675 -6.25890375 24.27947406 1.972121978 2.54938437 0.179404115 0.718904882 334.2050062 3200109.096 0.147786171 0.237761792 5.51E-07 6.25890375 0.577262392 EKVAS(ph)DTEEADRTSSK ddPTM_HeLa_CUDC101_4h_R1 2 EKVASDTEEADRTSSK 16 2 A0A590UJ84;B1AKN3;Q9P2R6-2;Q9P2R6;D6RA28 A0A590UJ84 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 EKVAS(0.999)DTEEADRTSSK;EKVAS(0.989)DTEEADRT(0.008)S(0.002)SK ; 103.41 0.0026409 39360000 6592.2 6713.7 7012.1 6422.3 8177.1 6840 6502.1 7768.1 6959.4 5432 TRUE FALSE FALSE 5819.472309 6920.541139 7391.195336 6684.229154 7573.891624 6709.538396 6752.888175 8652.389104 6672.530586 5399.690222 1.077741883 1.281655216 1.368818401 1.237891227 1.402652988 1.242578392 1.25060659 1.602386201 1.235724701 1 12.39866093 -7.265277401 2.105332178 1.029849943 1.340506218 0.420104744 0.12068777 0.132559315 1.112870815 0.017578055 0.020809476 5.43E-08 7.265277401 0.310656275 YFDS(ph)GDYNMAK ddPTM_HeLa_CUDC101_4h_R1 6 YFDSGDYNMAK 11 0 H3BTD3;P56211-2;H3BMD8;O43768-6;H3BQ52;O43768;O43768-2;O43768-3;A6NMQ3;Q5T5H1;O43768-9;O43768-4;O43768-5;O43768-7;P56211 H3BTD3;O43768;P56211 ARPP19;ENSA cAMP-regulated phosphoprotein 19;Alpha-endosulfine 1 0 YFDS(1)GDYNMAK;Y(0.001)FDS(0.999)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;YFDS(1)GDYNMAK;Y(0.002)FDS(0.998)GDYNMAK ;;;;; 162.48 8.95E-05 4131277000 21809.8 21931.1 22530.2 20089.2 23472.2 22284.9 21692.5 18844.5 21312.3 19848.4 TRUE FALSE FALSE 19253.28831 22606.7712 23748.25076 20908.52441 21740.70257 21859.85266 22529.18699 20989.68171 20433.79797 19730.34083 0.975821374 1.14578716 1.203641182 1.059714304 1.101891891 1.107930818 1.141854932 1.063827629 1.035653573 1 14.26812826 -7.265252353 24.97320346 0.988582313 1.118806804 0.597777354 0.042289447 127.5687492 835513.3462 0.006691002 0.007809212 5.43E-08 7.265252353 0.130224491 HTVDDGLDIR ddPTM_HeLa_CUDC101_4h_R1 2 HTVDDGLDIR 10 0 Q86VP6-2;Q86VP6;A0A0C4DGH5 Q86VP6-2 CAND1 Cullin-associated NEDD8-dissociated protein 1 0 0 ; ; 146.71 0.00065479 16345600 3381 2515.01 2414.1 2562 2778.1 2363.14 2394.27 2114.95 2468.8 2612.7 FALSE FALSE TRUE 2984.684305 2592.494477 2544.613548 2666.489434 2573.165098 2318.067042 2486.617796 2355.707359 2367.035019 2597.159544 1.149210995 0.998203781 0.979767898 1.026694505 0.990761274 0.892539331 0.957437444 0.907032209 0.911393766 1 11.34271893 -5.936521536 0.8716619 1.065876792 0.918877852 0.069243518 0.068104287 0.43023695 0.626498617 0.011719406 0.034523526 1.16E-06 5.936521536 -0.14699894 QLPLEPESPSGQVGPRPAPPQEES(ph)PSSEAK ddPTM_HeLa_CUDC101_4h_R1 1 QLPLEPESPSGQVGPRPAPPQEESPSSEAK 30 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 QLPLEPES(0.005)PS(0.012)GQVGPRPAPPQEES(0.878)PS(0.08)S(0.025)EAK 77.464 9.68E-06 68782000 2030.8 2390.4 2301.9 1959 2026.4 2197.3 2055.7 2113.9 2638.1 2293.7 TRUE FALSE FALSE 1792.752702 2464.045391 2426.347677 2038.896488 1876.916509 2155.390163 2134.989038 2354.537831 2529.356401 2280.05697 0.786275398 1.080694659 1.064160987 0.894230501 0.823188426 0.945322942 0.936375303 1.032666228 1.109339124 1 11.15485416 -7.265151985 24.98840555 0.899074498 0.96127674 0 0.110227614 732.7645595 4932005.833 0.018637084 0.021745626 5.43E-08 7.265151985 0.062202242 HTWMEDADSCVAHNALECAR ddPTM_HeLa_CUDC101_4h_R1 1 HTWMEDADSCVAHNALECAR 20 0 O94906;O94906-2 O94906 PRPF6 Pre-mRNA-processing factor 6 0 0 46.15 0.03347 10321000 1097.5 761.66 734.44 691.6 1032.7 927.56 1018.4 901.38 922.17 391.12 FALSE FALSE TRUE 968.8527137 785.1258418 774.146048 719.8064374 956.5197784 909.8683384 1057.680029 1003.989456 884.1577623 388.7936008 2.491946142 2.019389826 1.99114915 1.851384477 2.460225107 2.340234861 2.72041522 2.582319908 2.274105748 1 8.602860664 -10.15552085 0.414355459 1.56E-11 2.37923665 0 0.482399346 1.625374903 0.216202062 1.856799761 0.087316796 6.99E-11 10.15552085 2.37923665 ASTSSSSSSSSNQQTEKETNT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 ASTSSSSSSSSNQQTEKETNTPK 23 1 C9J2P0;P51965-3;P51965 C9J2P0 UBE2E1 Ubiquitin-conjugating enzyme E2 E1 1 0 ASTSSSSSS(0.001)S(0.001)SNQQT(0.026)EKET(0.318)NT(0.653)PK 94.003 0.00017941 45292000 4158.2 3040.8 3507.2 3004.3 3300.1 2414.2 2235.1 1341 3474.9 3898.1 TRUE FALSE FALSE 3670.782099 3134.483444 3696.809841 3126.82834 3056.658198 2368.153157 2321.308556 1493.654019 3331.663151 3874.913928 0.947319648 0.808916921 0.954036634 0.806941366 0.78883254 0.611149874 0.599060676 0.385467664 0.859803137 1 11.91994855 -4.284311351 0.403857972 0.987531984 9.82E-20 0.877621556 0.063688601 0.813343938 0.091054551 0.012559578 0.385771141 5.20E-05 4.284311351 -0.987531984 down RPPGGT(ph)SPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLR ddPTM_HeLa_CUDC101_4h_R1 1 RPPGGTSPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLR 45 1 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;Q8WWM7-7;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 1 0 RPPGGT(0.49)S(0.49)PPNGGLPGPLAT(0.01)S(0.01)AAPPGPPAAASPCLGPVAAAGSGLR 52.451 0.0027485 21577000 904.19 1170.3 1144.8 955.24 1240.4 995.62 1004.3 1116.7 1309.2 940.85 TRUE FALSE FALSE 798.2022189 1206.355556 1206.691351 994.1988161 1148.898163 976.6302073 1043.036187 1243.820614 1255.234222 935.2537824 0.853460562 1.289869743 1.290228785 1.06302571 1.228434661 1.044240853 1.115244019 1.329928451 1.342132206 1 9.869214085 -7.265134011 24.99993216 0.930800819 1.185541951 0 0.162607649 169.3352861 1145815.448 0.017681363 0.020640302 5.43E-08 7.265134011 0.254741132 HVEEFSPR ddPTM_HeLa_CUDC101_4h_R1 2 HVEEFSPR 8 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 0 ; ; 160.63 0.00090921 18573300 3590 2453.6 2468.4 2760.3 3623.1 3236.8 3131.2 3255.7 3039.6 3364.8 FALSE FALSE TRUE 3169.185642 2529.192508 2601.849171 2872.876965 3355.831131 3175.063433 3251.971433 3626.315728 2914.306401 3344.78602 0.947500266 0.756159734 0.777882099 0.858912034 1.003302188 0.949257565 0.972250964 1.084169722 0.871298308 1 11.7076982 -3.835789066 1.243432053 0.936065357 1.322097373 0.220432976 0.087287502 5.31615624 3.372361393 0.014908599 3.398945838 0.000145952 3.835789066 0.386032015 HVFGESDELIGQK ddPTM_HeLa_CUDC101_4h_R1 1 HVFGESDELIGQK 13 0 P60174;P60174-3;P60174-4;U3KPZ0;U3KPS5;U3KQF3 P60174 TPI1 Triosephosphate isomerase 0 0 95.477 0.00091916 0 6244 3948.6 3892.8 4300.5 4871.6 5001.5 4503.7 5388.2 5250.4 5283.6 FALSE FALSE TRUE 5512.087785 4070.251686 4103.256543 4475.892978 4512.231774 4906.104721 4677.409218 6001.570908 5033.97629 5252.172912 1.049487113 0.774965287 0.781249325 0.852198329 0.85911714 0.93410952 0.890566494 1.14268342 0.958455933 1 12.3586987 -7.286212192 24.95716635 1.02336892 0.885458045 0.200783278 0.099432434 679.3095618 684362.8549 0.01672011 0.019124529 5.17E-08 7.286212192 -0.137910875 HVGNQQYNVTYVVK ddPTM_HeLa_CUDC101_4h_R1 1 HVGNQQYNVTYVVK 14 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;A0A0A0MT44 O75369-8 FLNB Filamin-B 0 0 90.412 0.015533 1769900 1387.8 1383.2 1075.9 1197.1 1227.3 1574.8 1425.7 1309.3 1449 942.13 FALSE FALSE TRUE 1225.124188 1425.814753 1134.066408 1245.922912 1136.764524 1544.763314 1480.689727 1458.34542 1389.271607 936.5261689 1.308157987 1.52245052 1.210928692 1.330366362 1.213809674 1.649460918 1.58104469 1.55718598 1.483430632 1 9.871175497 -8.421327816 0.062067876 1.17E-14 2.399612807 0.042898418 0.191539908 22.07947733 0.587758732 12.89596015 9.610360617 3.79E-09 8.421327816 2.399612807 HVINFDLPSDIEEYVHR ddPTM_HeLa_CUDC101_4h_R1 2 HVINFDLPSDIEEYVHR 17 0 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;F6S8Q4;A0A2R8Y645;O00571;O00571-2;A0A2U3TZJ9;A0A0D9SFB3;A0A0D9SF53;A0A0D9SG12;A0A2R8YF78;A0A2R8YDT5;A0A2R8Y7T2;A0A0J9YVQ7;O15523-2;O15523;A0A087WVZ1 A0A2R8Y5G6 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 0 ; ; 162.79 2.28E-05 101429000 4757 5200.2 4528.2 4983.8 5969.3 5527.1 6022 5541.4 5438.3 5370.9 FALSE FALSE TRUE 4199.391671 5360.411998 4773.008189 5187.060906 5528.956632 5421.679776 6254.270557 6172.210577 5214.130972 5338.953648 0.786557057 1.004019205 0.893996933 0.971550092 1.035588056 1.01549482 1.171441254 1.156071205 0.976620386 1 12.38234131 -5.159747278 0.811533058 0.904236622 1.199466626 0.604704568 0.066955774 0.549895639 0.517567423 0.01463941 0.11086377 6.92E-06 5.159747278 0.295230004 HVIPMNPNTDDLFK ddPTM_HeLa_CUDC101_4h_R1 1 HVIPMNPNTDDLFK 14 0 P13797;P13797-3;A0A0A0MSQ0;P13797-2;U3KQI3 P13797 PLS3 Plastin-3 0 0 93.348 0.01045 11291000 5738.6 4150.3 4187.2 3857 4214.1 4307.1 4065.9 4513.4 4355.8 5612.4 FALSE FALSE TRUE 5065.930007 4278.165824 4413.572698 4014.305131 3903.234239 4224.949244 4222.723125 5027.187212 4176.25208 5579.017195 0.908032693 0.766831446 0.791102186 0.719536254 0.699627569 0.757292745 0.756893728 0.901088317 0.748564117 1 12.44579528 -7.496403792 1.205186825 0.973176691 0.760325998 0.069586897 0.089298466 0.152180898 0.441746125 0.012054921 0.01286576 3.19E-08 7.496403792 -0.212850693 S(ph)NFSNSADDIK ddPTM_HeLa_CUDC101_4h_R1 2 SNFSNSADDIK 11 0 P45973 P45973 CBX5 Chromobox protein homolog 5 1 0 S(0.973)NFS(0.027)NSADDIK;S(0.985)NFS(0.015)NSADDIK ; 174.24 5.51E-07 271150000 4706.2 3945.7 4107.3 4026.8 4589.7 4449.3 3350.4 1126.69 4817 3982 TRUE FALSE FALSE 4154.54637 4067.26234 4329.353062 4191.030309 4251.126975 4364.437016 3479.62605 1254.947835 4618.441221 3958.314887 1.0495745 1.027523695 1.093736397 1.058791539 1.073973925 1.102599753 0.87906752 0.317040931 1.166769535 1 11.95067067 -4.283454611 2.788102106 1.03927413 0.20240029 0.947851747 0.052819522 0.047799686 0.520920679 0.005603324 0.08873657 5.21E-05 4.283454611 -0.83687384 down HVLTGSADNSCR ddPTM_HeLa_CUDC101_4h_R1 2 HVLTGSADNSCR 12 0 Q13347;Q5TFK1 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I 0 0 ; ; 153.54 0.0003357 4723500 2273.19 1480.69 1474 1589.26 1861.55 1785.97 1716.71 1386.11 1810.69 633.25 FALSE FALSE TRUE 2006.730114 1526.308304 1553.688899 1654.076892 1724.227165 1751.905598 1782.92408 1543.89916 1736.052592 629.4834008 3.187899969 2.424699844 2.468196773 2.627673565 2.739114587 2.783084662 2.832360754 2.452644752 2.757900509 1 9.298024525 -9.387878556 1.00557659 0.955330561 2.720185209 0 0.576526625 0.150098881 0.260364656 0.197077857 0.04564953 4.09E-10 9.387878556 1.764854648 HVLVTLGEK ddPTM_HeLa_CUDC101_4h_R1 2 HVLVTLGEK 9 0 P60660-2;F8VZU9;G3V1Y7;F8W1R7;G8JLA2;G3V1V0;F8W180;P60660;F8VPF3;J3KND3;B7Z6Z4;F8VXL3;H0YI43 P60660-2 MYL6 Myosin light polypeptide 6 0 0 ; ; 115.71 0.0014376 26198000 22596.5 17137.3 12313.5 17637.1 16871 16939.9 15096.6 14585.3 11670 8021.4 FALSE FALSE TRUE 19947.77252 17665.2799 12979.20506 18356.41717 15626.45994 16616.79963 15678.88092 16245.6316 11188.95766 7973.688356 2.501699544 2.215446492 1.627754243 2.302123729 1.959753033 2.083953986 1.966327278 2.037404884 1.403234885 1 12.9610315 -9.432317408 1.132083911 0.992728254 2.11291553 0.661004641 0.247971153 0.196208097 0.445133544 0.174434872 0.042595865 3.70E-10 9.432317408 1.120187277 YNAPTSHVTPS(ph)VK ddPTM_HeLa_CUDC101_4h_R1 1 YNAPTSHVTPSVK 13 0 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 YNAPTSHVT(0.363)PS(0.637)VK 86.411 0.01448 19374000 7744.6 5178.7 5844.2 5127.1 6210.1 6198.2 5143.7 4855.6 5750.8 6476.8 TRUE FALSE FALSE 6836.789728 5338.249609 6160.15513 5336.205299 5751.993295 6079.979662 5342.094232 5408.341877 5513.74959 6438.275706 1.061897632 0.829142748 0.956802009 0.828825223 0.893405868 0.944349068 0.829739899 0.840029555 0.856401596 1 12.65245864 -7.265094355 24.99768591 1.029229439 0.877692506 0.171525136 0.071555854 126.4837204 865065.9862 0.007975874 0.009305156 5.43E-08 7.265094355 -0.151536933 KGGEFDEFVNDDT(ph)DDDLPISKK ddPTM_HeLa_CUDC101_4h_R1 2 KGGEFDEFVNDDTDDDLPISKK 22 2 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 KGGEFDEFVNDDT(0.999)DDDLPIS(0.001)KK;KGGEFDEFVNDDT(0.999)DDDLPIS(0.001)KK ; 71.592 0.0026769 65557000 4534.8 4681.6 4429.4 3936.4 5418.7 4521 4515 4591.2 4757.6 4209.4 TRUE FALSE FALSE 4003.237618 4825.834547 4668.866762 4096.943407 5018.973297 4434.769457 4689.145062 5113.84365 4561.489714 4184.362302 0.95671391 1.153302271 1.115789319 0.979108192 1.199459544 1.059843565 1.120635529 1.222132139 1.090127811 1 12.03079206 -7.265031012 24.98665167 0.979559345 1.116371071 0.262388801 0.073941272 183.4016052 1275904.671 0.010621538 0.012407898 5.43E-08 7.265031012 0.136811727 KNQSS(ph)EDILR ddPTM_HeLa_CUDC101_4h_R1 1 KNQSSEDILR 10 1 Q13625-2;Q13625;Q13625-3;H0Y847 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 KNQS(0.238)S(0.762)EDILR 70.54 0.034151 100960000 4843.3 5798.3 4504.6 5192.4 6723.3 6327.3 5718 3707.4 4466.5 4922.4 TRUE FALSE FALSE 4275.575716 5976.93875 4748.132302 5404.168515 6227.335554 6206.617295 5938.545175 4129.43543 4282.38898 4893.121346 0.873793109 1.221498166 0.970368803 1.104441957 1.272671392 1.268437232 1.213651728 0.843926635 0.875185526 1 12.25653935 -7.264978537 24.9246164 0.940402301 1.135175341 0.343626392 0.132456608 260.3165565 1833281.463 0.022592251 0.026387484 5.43E-08 7.264978537 0.19477304 AGMSS(ph)NQSISSPVLDAVPR ddPTM_HeLa_CUDC101_4h_R1 1 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AGMS(0.06)S(0.285)NQS(0.218)IS(0.218)S(0.218)PVLDAVPR 68.171 0.030551 9354900 2165.2 1414.7 1547.2 1304.2 1637.1 1612.5 1519 1666.1 1953 1779.3 TRUE FALSE FALSE 1911.398538 1458.28523 1630.846312 1357.390913 1516.334395 1581.744249 1577.588339 1855.762089 1872.496513 1768.716644 1.08066973 0.824487763 0.922050639 0.767443964 0.857307698 0.894289232 0.891939556 1.0492139 1.058675237 1 10.78848723 -7.264977257 24.99302402 1.03809404 0.882816513 0.513488718 0.071058756 187.1595995 1322169.581 0.012286185 0.014345161 5.43E-08 7.264977257 -0.155277528 FNDS(ph)EGDDTEETEDYR ddPTM_HeLa_CUDC101_4h_R1 4 FNDSEGDDTEETEDYR 16 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 FNDS(1)EGDDTEETEDYR;FNDS(0.996)EGDDTEET(0.003)EDYR;FNDS(1)EGDDTEETEDYR;FNDS(1)EGDDTEETEDYR ;;; 242.9 2.25E-70 13728000 3163.24 2988.61 3165.31 2772.8 2810.28 3244.1 2883.81 2672.34 3076.66 2920.44 TRUE FALSE FALSE 2792.449802 3080.685532 3336.436233 2885.886769 2602.971243 3182.224198 2995.039518 2976.548384 2949.838773 2903.069093 0.961895743 1.061182298 1.149278962 0.994081324 0.896627383 1.096158615 1.031680412 1.0253109 1.016110426 1 11.50336319 -7.264870337 24.88417998 0.982006323 1.035799476 0.08328104 0.063476499 432.8051935 3139071.255 0.010921307 0.012752574 5.43E-08 7.264870337 0.053793153 HWDQDDDFEFTGSHLTVR ddPTM_HeLa_CUDC101_4h_R1 2 HWDQDDDFEFTGSHLTVR 18 0 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 0 0 ; ; 202.84 2.65E-17 30036000 4741.4 3133.2 2214.7 2144.18 5233.6 4127.5 3488.8 2733.9 3835.7 3337.4 FALSE FALSE TRUE 4185.620279 3229.730178 2334.433381 2231.628928 4847.527755 4048.774814 3623.364185 3045.116125 3677.590822 3317.548996 1.261660426 0.973529006 0.703662066 0.672673992 1.461177442 1.22041146 1.092181062 0.917881282 1.108526453 1 11.69590206 -7.211224921 24.960061 1.12356208 1.01056364 0.053832873 0.225085481 1012.011078 503039.8002 0.041412645 0.050719897 6.15E-08 7.211224921 -0.112998441 HWDQNER ddPTM_HeLa_CUDC101_4h_R1 2 HWDQNER 7 0 F5GZI0;F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4 F5GZI0 SLC3A2 4F2 cell-surface antigen heavy chain 0 0 ; ; 93.195 0.027541 8179800 2627.4 1392.58 3165 2885.7 1922.03 1978.65 2258.4 1594.4 2644.6 3402 FALSE FALSE TRUE 2319.420155 1435.483739 3336.109474 3003.391319 1780.245676 1940.910548 2345.507245 1775.900051 2535.588469 3381.764753 0.685860882 0.424477704 0.98649957 0.888113615 0.526425049 0.57393423 0.693574928 0.525140032 0.74978263 1 11.72356059 -13.52287875 0.188729243 2.519495512 0.595232931 0.115886496 0.178999968 41.85548578 0.493186208 23.28775781 0.19867507 3.00E-14 13.52287875 -1.924262581 HWELTAEGEEIAR ddPTM_HeLa_CUDC101_4h_R1 3 HWELTAEGEEIAR 13 0 K7ER00;Q9Y285-2;Q9Y285;K7EK06;K7ER16 K7ER00 FARSA Phenylalanine--tRNA ligase alpha subunit 0 0 ;; ;; 170 4.62E-07 19038500 6645.1 6124 5645.3 5622.7 6404.5 6152.1 5359.1 5668.24 5853.3 6674.2 FALSE FALSE TRUE 5866.171451 6312.673181 5950.501994 5852.018009 5932.052795 6034.758943 5565.802282 6313.48953 5612.024497 6634.501562 0.884191736 0.951491702 0.896902644 0.882058427 0.894121848 0.90960246 0.838917925 0.951614748 0.845884871 1 12.69577237 -9.512246669 0.607830963 1.024100198 0.896624085 0 0.057695935 0.714357738 0.328863712 0.053092948 0.006498364 3.07E-10 9.512246669 -0.127476113 HWILPQDYDHAQAEAR ddPTM_HeLa_CUDC101_4h_R1 4 HWILPQDYDHAQAEAR 16 0 Q15293;Q15293-2 Q15293 RCN1 Reticulocalbin-1 0 0 ;;; ;;; 134.37 0.00031894 61924000 8311.8 8045.3 8271.5 8408.6 9350.8 7984.5 7762.3 7952.5 8560.7 8089.2 FALSE FALSE TRUE 7337.503404 8293.166157 8718.68231 8751.539053 8661.010113 7832.208966 8061.694511 8857.780455 8207.824323 8041.085079 0.91250165 1.031349137 1.08426689 1.088352998 1.077094699 0.97402389 1.002563016 1.10156532 1.020735913 1 12.97317448 -7.100064847 6.038921218 0.958866142 1.05168286 0.330011547 0.046565118 0.166180629 8.410752681 0.008356472 0.010281546 7.94E-08 7.100064847 0.092816718 HWMLDK ddPTM_HeLa_CUDC101_4h_R1 1 HWMLDK 6 0 C9JEH7;Q8TD47;P62701;P22090 C9JEH7 RPS4Y1;RPS4Y2;RPS4X "40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1" 0 0 100.82 0.025217 29453000 10341 8241.3 7143.5 8611.5 7562.9 7203.9 7623.5 6907.5 6450.3 3989.6 FALSE FALSE TRUE 9128.843656 8495.204685 7529.699218 8962.714192 7004.999934 7066.49761 7917.540949 7693.821879 6184.415904 3965.869682 2.301851646 2.142078627 1.898624973 2.259961852 1.76632126 1.781827992 1.996419848 1.940008749 1.559409764 1 11.95342156 -9.369132375 1.04703772 0.989027268 2.024507701 0.567021947 0.237786812 0.181424385 0.349897916 0.140776862 0.034907292 4.27E-10 9.369132375 1.035480433 HWPFMVVNDAGRPK ddPTM_HeLa_CUDC101_4h_R1 4 HWPFMVVNDAGRPK 14 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ;;; ;;; 116.71 0.0011036 51037410 18113.95 17131.98 17239.85 18040.46 18255.14 17204.09 16493.42 17450.72 16804.19 15180.59 FALSE FALSE TRUE 15990.66024 17659.796 18171.88844 18776.22794 16908.49469 16875.95065 17129.57673 19437.23943 16111.51418 15090.29518 1.059665172 1.170275054 1.204210271 1.244258493 1.120488002 1.118331381 1.135138613 1.288062241 1.067673892 1 13.88133341 -7.381837019 2.092529493 1.022631932 1.181110687 0.589075661 0.053626554 0.143492327 1.196270869 0.010045827 0.011396421 4.15E-08 7.381837019 0.158478755 HWPFQVINDGDK(ac)PK ddPTM_HeLa_CUDC101_4h_R1 1 HWPFQVINDGDKPK 14 1 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 1 HWPFQVINDGDK(1)PK 131.35 0.0028494 533110 585.99 166.98 155.82 288.34 618.54 330.89 516.99 444.69 509.67 372.5 FALSE TRUE FALSE 517.3011405 172.1244559 164.2441005 300.0997515 572.9115365 324.5788246 536.9304775 495.3117121 488.6611869 370.2843534 1.397037535 0.464843989 0.443562087 0.810457554 1.547220484 0.876566405 1.450049057 1.337652287 1.319691697 1 8.532489779 -5.765665139 24.99931451 1.04607653 1.28293428 0.174670982 0.349633647 233.5087815 1381433.972 0.05868518 0.109173159 1.72E-06 5.765665139 0.23685775 HWPFQVINDGDKPK ddPTM_HeLa_CUDC101_4h_R1 2 HWPFQVINDGDKPK 14 1 A0A0G2JIW1;P0DMV9;P0DMV8 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 84.892 0.011393 65083000 16172.2 14818 15128.7 16898 17076.7 15020.3 14339.1 15459 15910 15551.6 FALSE FALSE TRUE 14276.51923 15274.52502 15946.60328 17587.17348 15816.98586 14733.8128 14892.16389 17218.79007 15254.18307 15459.09839 0.923502708 0.988060534 1.031535144 1.137658422 1.023150604 0.953083578 0.963326807 1.113828869 0.986744678 1 13.91616856 -6.878190249 4.05164267 0.963581091 1.033789905 0.224582017 0.056858329 0.259457602 7.854536161 0.010055785 0.013415395 1.32E-07 6.878190249 0.070208815 ASSPSPLT(ph)IGTPESQR ddPTM_HeLa_CUDC101_4h_R1 1 ASSPSPLTIGTPESQR 16 0 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 1 0 AS(0.01)S(0.109)PS(0.358)PLT(0.516)IGT(0.007)PESQR 135.61 0.0019412 84305000 3138.3 2553.7 2309.4 2240.8 2253 2151.4 2175.2 2320.5 2532.7 3133.6 TRUE FALSE FALSE 2770.433231 2632.37647 2434.25315 2332.18951 2086.800679 2110.365629 2259.098193 2584.65634 2428.301034 3114.961208 0.889395741 0.845075201 0.781471417 0.748705796 0.669928304 0.67749339 0.725241196 0.829755547 0.779560602 1 11.60499848 -7.264863043 0.670952235 0.977320971 0.716929852 0.360478517 0.076509045 0.181012388 0.174330721 0.013758015 0.016332744 5.43E-08 7.264863043 -0.260391119 HYAHTDCPGHADYVK ddPTM_HeLa_CUDC101_4h_R1 4 HYAHTDCPGHADYVK 15 0 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 ;;; ;;; 103.11 0.0034115 34655900 12214.2 9620.8 9603.9 11190.1 10528.4 10163.2 8913.96 8120.34 9595.7 5953.01 FALSE FALSE TRUE 10782.46999 9917.205445 10123.11588 11646.48065 9751.740908 9969.353893 9257.774423 9044.726682 9200.161185 5917.601232 1.822101485 1.675882686 1.710678954 1.968108392 1.647921265 1.684695116 1.564447157 1.528444775 1.554711246 1 12.53079677 -9.286228638 0.889641455 0.975961156 1.708771586 0.273856848 0.204918258 0.206573779 0.277945025 0.102905833 0.024421422 5.17E-10 9.286228638 0.73281043 HYEAEHEYYER ddPTM_HeLa_CUDC101_4h_R1 2 HYEAEHEYYER 11 0 A0A096LPB0;Q7L775 A0A096LPB0 EPM2AIP1 EPM2A-interacting protein 1 0 0 ; ; 150.46 0.00048266 9146700 2144.12 1877.29 2198.7 2161.59 1893.6 1820.42 1543.53 1677.43 1984.62 1966.52 FALSE FALSE TRUE 1892.789504 1935.12708 2317.568373 2249.748983 1753.912901 1785.698522 1603.064469 1868.381851 1902.813124 1954.823052 0.968266413 0.989924422 1.185564274 1.15087091 0.897223357 0.913483458 0.820056049 0.95578055 0.973394048 1 10.93282231 -5.575225063 24.99985104 1.012629231 0.891559392 0.424257859 0.079320556 89.71920115 42848.27314 0.012603288 0.02520658 2.66E-06 5.575225063 -0.121069839 GS(ph)GGLFSPSTAHVPDGALGQR ddPTM_HeLa_CUDC101_4h_R1 2 GSGGLFSPSTAHVPDGALGQR 21 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 GS(1)GGLFSPSTAHVPDGALGQR;GS(0.993)GGLFS(0.005)PS(0.001)T(0.001)AHVPDGALGQR ; 115.57 9.38E-06 20035900 1809.19 1243.01 1247.74 1338.68 1728.78 1452.29 1202.53 1296.17 1307.88 1422.19 TRUE FALSE FALSE 1597.119491 1281.305665 1315.196599 1393.277157 1601.251344 1424.589988 1248.911985 1443.720754 1253.968633 1413.730751 1.129719708 0.906329345 0.930302038 0.985532186 1.132642367 1.007681263 0.883415731 1.021213377 0.886992542 1 10.46529167 -7.264774045 24.99892453 1.061256527 0.982343174 0 0.090461849 391.3993733 2934192.059 0.013958395 0.016308646 5.44E-08 7.264774045 -0.078913353 HYELYR ddPTM_HeLa_CUDC101_4h_R1 3 HYELYR 6 0 Q9P0V9-2;E7EX04;Q9P0V9;E7EW69;B5ME97;D6RDU5;F8W8I8;A6NFQ9;B1AMS2;A0A087X142;H0Y961;A6NMH6;Q14141-4;Q92599-2;Q14141-2;Q14141;Q9NVA2-2;Q92599-4;Q92599-3;Q92599;Q9P0V9-3;D6RGI3;D6RER5;Q9NVA2 Q9P0V9-2;D6RGI3 SEPT10;SEPT11;SEPT8;SEPT6 Septin-10;Septin-6;Septin-8;Septin-11 0 0 ;; ;; 148.4 0.0079051 29739000 3641.34 2128.72 1644.24 2457.41 2498.94 2222.19 1663.91 1818.4 1995.19 1080.77 FALSE FALSE TRUE 3214.507645 2194.30334 1733.132588 2557.633802 2314.598175 2179.805428 1728.087566 2025.399306 1912.947424 1074.341532 2.992072399 2.042463476 1.613204494 2.380652451 2.154434233 2.028968781 1.608508574 1.885247145 1.780576629 1 10.06923698 -4.777855596 23.70036592 1.994771963 1.746877826 0.040746342 0.489058765 507.0350625 732022.1858 0.10322295 0.31122185 1.67E-05 4.777855596 -0.247894137 HYFQNTQGLIFVVDSNDRER ddPTM_HeLa_CUDC101_4h_R1 2 HYFQNTQGLIFVVDSNDRER 20 1 F5H423;P84077;P61204;C9J1Z8;F5H0C7;C9JPM4;P18085;C9JAK5;P84085 F5H423;P84085 ARF1;ARF3;ARF5;ARF4 ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 4;ADP-ribosylation factor 5 0 0 ; ; 70.784 0.0047794 34845000 2526.08 2106.15 2064.64 1910.08 2923.9 2446.63 2087.05 2719.4 2620.14 2687.13 FALSE FALSE TRUE 2229.976732 2171.037985 2176.260684 1987.981318 2708.209722 2399.964609 2167.548218 3028.965504 2512.13672 2671.146831 0.834838694 0.812773734 0.814728961 0.744242621 1.013875273 0.898477231 0.811467267 1.133956946 0.94047122 1 11.38324357 -4.248803127 24.33972752 0.893298161 1.133957165 0.439629766 0.08553649 1251.18142 2409942.081 0.013619718 0.315611281 5.64E-05 4.248803127 0.240659005 HYGDQVDR ddPTM_HeLa_CUDC101_4h_R1 4 HYGDQVDR 8 0 E7ES68;G5E9D5;Q9BQ52;Q9BQ52-3;Q9BQ52-4;Q9BQ52-2 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 0 0 ;;; ;;; 132.76 0.0048436 12311200 1599.8 974.23 2099.64 1810.21 1312.16 1275.36 1853.42 935.94 1764.75 1929.65 FALSE FALSE TRUE 1412.273869 1004.244872 2213.152889 1884.038188 1215.364571 1251.034633 1924.90703 1042.483626 1692.006258 1918.172356 0.736260151 0.523542563 1.153782079 0.982204848 0.633605508 0.652201367 1.003510985 0.543477557 0.882092922 1 10.90551664 -9.31853415 1.045112322 0.999971085 0.78535488 0.083463844 0.201072316 0.837295739 1.638909953 0.131544642 0.034974964 4.80E-10 9.31853415 -0.214616205 LS(ph)SEMNTSTVNSAR ddPTM_HeLa_CUDC101_4h_R1 1 LSSEMNTSTVNSAR 14 0 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 1 0 LS(0.765)S(0.235)EMNTSTVNSAR 121.92 0.0013467 4930200 519.62 313.55 395.7 294.78 217.4 300.39 392.24 361.58 683.77 462.08 TRUE FALSE FALSE 458.7109313 323.2101039 417.0927389 306.8024025 201.3628351 294.6605612 407.3688282 402.7408056 655.5847112 459.3315276 0.998648914 0.70365321 0.908042914 0.667932385 0.438382351 0.641498664 0.886873214 0.876797654 1.427258248 1 8.843392 -7.26470819 23.94930342 0.999361997 0.727395021 0.448898192 0.189338377 107.0331865 784189.6806 0.023859006 0.02790151 5.44E-08 7.26470819 -0.271966976 QERLS(ph)PEVAPPAHR ddPTM_HeLa_CUDC101_4h_R1 1 QERLSPEVAPPAHR 14 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 QERLS(1)PEVAPPAHR 152.94 8.67E-05 351390000 2165.7 2357.9 2511 2275.9 2554 2194.7 2300.4 1985.1 1850 1964 TRUE FALSE FALSE 1911.839929 2430.544104 2646.752255 2368.721039 2365.596508 2152.839754 2389.127199 2211.07576 1773.742217 1952.318041 0.979266641 1.24495295 1.355697279 1.213286457 1.211686036 1.102709553 1.223738729 1.132538712 0.908531387 1 10.93097238 -7.264584153 24.92191443 0.990209243 1.213882588 0.731869684 0.068587349 100.6809779 797882.3039 0.011166036 0.013064262 5.44E-08 7.264584153 0.223673345 HYNGEAYEDDEHHPR ddPTM_HeLa_CUDC101_4h_R1 5 HYNGEAYEDDEHHPR 15 0 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 0 ;;;; ;;;; 98.943 0.0019489 311643000 10557.8 9542.1 10452.9 10159.3 10124.5 9197.7 8400.5 8748.2 10127.2 10353.9 FALSE FALSE TRUE 9320.230689 9836.080791 11018.01539 10573.64017 9377.635806 9022.269197 8724.510099 9744.059727 9709.75253 10292.31454 0.905552454 0.955672385 1.070509004 1.027333563 0.911129928 0.876602552 0.847672315 0.94673163 0.943398347 1 13.32927983 -5.541382323 20.67529086 0.968502762 0.887368648 0.414488654 0.049831391 30.45255479 34026.36633 0.008566971 0.017141139 2.87E-06 5.541382323 -0.081134114 DAPVHGS(ph)PTGPGAWTASK ddPTM_HeLa_CUDC101_4h_R1 2 DAPVHGSPTGPGAWTASK 18 0 Q9BRP1 Q9BRP1 PDCD2L Programmed cell death protein 2-like 1 0 DAPVHGS(0.861)PT(0.139)GPGAWTASK;DAPVHGS(0.699)PT(0.298)GPGAWT(0.003)ASK ; 67.995 0.013772 18266300 7923.5 7328.1 6742.5 7537.1 8139.6 7439.1 6524.3 7368.8 7377.9 7184.5 TRUE FALSE FALSE 6994.719341 7553.870075 7107.019945 7844.495516 7539.157924 7297.211562 6775.944436 8207.634406 7073.779839 7141.766274 0.979410285 1.057703345 0.995134771 1.098397121 1.055643329 1.021765664 0.94877712 1.149244331 0.990480445 1 12.8020652 -7.26448216 24.97574353 0.990277078 1.042296733 0.199200217 0.051579934 319.6470739 2623718.613 0.008118705 0.009496524 5.44E-08 7.26448216 0.052019655 SQS(ph)TTFNPDDMSEPEFK ddPTM_HeLa_CUDC101_4h_R1 2 SQSTTFNPDDMSEPEFK 17 0 Q86W92-4;Q86W92;Q86W92-3;F5GZP6;Q86W92-2 Q86W92-4;Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.02)QS(0.713)T(0.228)T(0.038)FNPDDMSEPEFK;S(0.001)QS(0.333)T(0.333)T(0.333)FNPDDMSEPEFK ; 282.33 1.95E-103 106899400 7169.8 5029.2 5018.8 5143.2 5249.2 5609.9 5081.7 4723.8 5241 6414.2 TRUE FALSE FALSE 6329.366913 5184.143691 5290.131509 5352.961927 4861.976974 5502.900504 5277.702871 5261.538298 5024.963762 6376.048053 0.992678672 0.813065342 0.829688149 0.839542281 0.762537693 0.863058192 0.82773888 0.825203677 0.788100046 1 12.63844679 -7.264307957 24.64248303 0.996542711 0.823271837 0.142184344 0.070128863 34.71882339 298251.1023 0.003809731 0.004458499 5.44E-08 7.264307957 -0.173270874 SHPAMSPGT(ph)PGPTMGR ddPTM_HeLa_CUDC101_4h_R1 2 SHPAMSPGTPGPTMGR 16 0 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GUC6;A0A1B0GUG2;A0A1B0GU09;A0A6I8PTU7 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 1 0 SHPAMS(0.276)PGT(0.724)PGPTMGR;SHPAMS(0.14)PGT(0.86)PGPTMGR ; 182.37 3.47E-16 15562000 2282.3 1422.86 1642.9 1584.21 2009.34 1660.14 1397.92 1616.52 1469.62 1690.82 TRUE FALSE FALSE 2014.772254 1466.69663 1731.720144 1648.820931 1861.114991 1628.475595 1451.838243 1800.538103 1409.041642 1680.762927 1.19872483 0.872637423 1.030317908 0.980995537 1.10730369 0.968890716 0.86379716 1.071262385 0.838334555 1 10.71490053 -7.264189391 24.99994953 1.093842278 0.986035366 0 0.117107702 288.5520817 2623179.762 0.016814708 0.019687224 5.44E-08 7.264189391 -0.107806913 RNES(ph)LTATDGLR ddPTM_HeLa_CUDC101_4h_R1 1 RNESLTATDGLR 12 1 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 RNES(0.974)LT(0.013)AT(0.013)DGLR 66.387 0.034386 4336900 1742.7 1659.1 1727.7 1712.8 1811.9 1516.9 1604.9 1438.9 1965.7 1590.5 TRUE FALSE FALSE 1538.423348 1710.214904 1821.104688 1782.655387 1678.239747 1487.96766 1666.801531 1602.69856 1884.673014 1581.039635 0.973045402 1.081702739 1.151839997 1.127520998 1.061478605 0.941132421 1.054243988 1.013699166 1.192046658 1 10.62665782 -7.263638255 24.86149598 0.987271439 1.062733453 0 0.084887774 184.2839556 2083600.824 0.010115581 0.011879979 5.45E-08 7.263638255 0.075462014 IAAYK(ac)SILQER ddPTM_HeLa_CUDC101_4h_R1 1 IAAYKSILQER 11 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 1 IAAYK(1)SILQER 157.97 0.00014199 624320 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)FSPTMK ddPTM_HeLa_CUDC101_4h_R1 1 SFSPTMK 7 0 A3KN83-4;A3KN83-3;A3KN83-2;A3KN83 A3KN83-4 SBNO1 Protein strawberry notch homolog 1 1 0 S(0.74)FS(0.111)PT(0.149)MK 109.48 0.014291 43669000 8275.9 6027 5898.9 6244.5 6779.7 6890.7 6652.4 6079.5 7724.7 6810.5 TRUE FALSE FALSE 7305.811547 6212.684726 6217.812377 6499.177701 6279.575038 6759.271378 6908.985296 6771.565706 7406.284596 6769.990843 1.079146444 0.91767993 0.918437339 0.959998005 0.927560344 0.99841662 1.020530966 1.000232624 1.093987388 1 12.72493817 -7.263393357 24.99974489 1.03737471 0.963596568 0.498411354 0.041954929 139.8191099 1788879.809 0.007867215 0.009226996 5.45E-08 7.263393357 -0.073778142 LS(ph)PPLHMAPGAGEHHLAR ddPTM_HeLa_CUDC101_4h_R1 1 LSPPLHMAPGAGEHHLAR 18 0 Q6ZN04 Q6ZN04 MEX3B RNA-binding protein MEX3B 1 0 LS(1)PPLHMAPGAGEHHLAR 87.388 0.0051294 6891800 1337.2 1059.2 1079.9 876.62 1155.5 1263.3 1013.7 1140.6 1063.1 1168.5 TRUE FALSE FALSE 1180.455443 1091.832697 1138.282661 912.3723527 1070.261067 1239.204657 1052.798749 1270.441294 1019.278568 1161.54971 1.016276301 0.939979311 0.979968959 0.785478525 0.92140789 1.066854605 0.906374251 1.093746813 0.877516097 1 10.18183518 -7.26332036 24.94638929 1.007686032 0.951596741 0 0.090586836 293.2451519 3889141.527 0.013241767 0.015553221 5.45E-08 7.26332036 -0.05608929 IHAESLLLDS(ph)PAVAK ddPTM_HeLa_CUDC101_4h_R1 1 IHAESLLLDSPAVAK 15 0 Q9H4L5-5;Q9H4L5;Q9H4L5-6;Q9H4L5-2 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 IHAESLLLDS(1)PAVAK 120.9 0.00058383 16988000 3982.4 2393.9 2498.5 2122.2 3061.9 3332 3047 2520.8 2834.4 2984.2 TRUE FALSE FALSE 3515.589109 2467.653222 2633.576468 2208.752489 2836.029737 3268.447651 3164.523811 2807.757683 2717.564832 2966.449846 1.185116652 0.831854017 0.887787289 0.744577729 0.956034952 1.101804454 1.066771385 0.94650435 0.916100043 1 11.53452168 -7.263169934 24.99651764 1.087416196 0.93703763 0.080124217 0.118951959 170.3737614 2460911.436 0.021294571 0.02502987 5.46E-08 7.263169934 -0.150378566 T(ph)VSASS(ph)TGDLPK ddPTM_HeLa_CUDC101_4h_R1 1 TVSASSTGDLPK 12 0 P78362;H7C5L6;P78362-2 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 2 0 T(0.681)VS(0.31)AS(0.079)S(0.767)T(0.163)GDLPK 109.95 0.00062935 0 5251.1 5393.2 5092.3 5068.4 6133.7 5389.6 5574.1 5202.4 4573.9 4649.7 TRUE FALSE FALSE 4635.574018 5559.358099 5367.605141 5275.111259 5681.229171 5286.80236 5789.094904 5794.620187 4385.361906 4622.043378 1.002927415 1.202792282 1.161305661 1.141294191 1.229159639 1.143823614 1.252496879 1.253692299 0.948792893 1 12.17431508 -7.263056604 24.60206777 1.001382386 1.195452838 0.845577046 0.041678043 29.50641175 448864.4129 0.006450124 0.007585642 5.46E-08 7.263056604 0.194070452 RYPS(ph)SISSS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 1 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 RYPS(0.665)S(0.33)IS(0.061)S(0.312)S(0.631)PQK 154.23 0.00060581 75991000 9770.8 6610.3 7552.9 6825.6 6699.4 7019.8 6990.5 7303 6459.9 8086.8 TRUE FALSE FALSE 8625.481636 6813.955508 7961.23262 7103.977471 6205.198609 6885.909011 7260.125927 8134.344 6193.620188 8038.699354 1.072994679 0.847644029 0.990363275 0.883722249 0.771915746 0.856594918 0.903146841 1.011898025 0.770475411 1 12.97274638 -7.262956289 24.99972065 1.034469711 0.892369163 0 0.106880968 88.13207561 1452473.03 0.011901016 0.014001583 5.46E-08 7.262956289 -0.142100547 EFITGDVEPTDAES(ph)EWHSENEEEEK ddPTM_HeLa_CUDC101_4h_R1 1 EFITGDVEPTDAESEWHSENEEEEK 25 0 Q99733;Q99733-2;E9PNJ7;C9J6D1;C9JZI7;A8MXH2;E9PKT8;E9PS34 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 EFITGDVEPT(0.1)DAES(0.585)EWHS(0.314)ENEEEEK 99.999 3.03E-06 432970000 6014.4 2919.6 2656.5 2562.4 4569 4042.6 3744.8 3421.4 4726.3 4535 TRUE FALSE FALSE 5309.401149 3009.549415 2800.118425 2666.905748 4231.953973 3965.49414 3889.23819 3810.878346 4531.479914 4508.025618 1.17776641 0.667598117 0.621140753 0.591590637 0.938759965 0.879652086 0.862736488 0.84535419 1.005202787 1 12.13828 -7.262807202 24.99998816 1.083945251 0.773629869 0.550898462 0.118859833 69.68434606 1273631.932 0.022932519 0.026979148 5.46E-08 7.262807202 -0.310315383 IADDKYNDTFWK ddPTM_HeLa_CUDC101_4h_R1 2 IADDKYNDTFWK 12 1 P14625 P14625 HSP90B1 Endoplasmin 0 0 ; ; 132.56 0.0018444 113487000 8105.4 5810.1 6448.3 6548 7457.3 6958.1 7085.7 6940.6 6733.9 6698.7 FALSE FALSE TRUE 7155.297299 5989.102294 6796.914603 6815.055743 6907.189836 6825.385835 7358.997823 7730.689849 6456.325792 6658.855834 1.074553568 0.899419126 1.020733107 1.02345747 1.037293795 1.025008801 1.105144488 1.160963691 0.969584858 1 12.70105859 -4.562116324 2.195193352 1.023400722 1.165200484 0.532196159 0.046672687 0.255753266 2.066763544 0.006809059 0.055059679 2.74E-05 4.562116324 0.141799762 SQALGQS(ph)APSLTASLK ddPTM_HeLa_CUDC101_4h_R1 2 SQALGQSAPSLTASLK 16 0 O15021;H7C0U3;H7C2V7;H7C3S4;E7EX28;O15021-4 O15021 MAST4 Microtubule-associated serine/threonine-protein kinase 4 1 0 SQALGQS(0.798)APS(0.144)LT(0.057)AS(0.001)LK;SQALGQS(0.994)APS(0.005)LT(0.001)ASLK ; 130.85 0.00047623 27681000 4625.5 3359.3 3141.3 3141.2 3787.3 3598.9 3674.1 4077.9 3723.4 3861.1 TRUE FALSE FALSE 4083.305902 3462.796051 3311.12818 3269.311713 3507.918424 3530.256979 3815.811268 4542.111653 3569.919876 3838.134005 1.063877889 0.902208221 0.862692177 0.851797178 0.913964551 0.919784711 0.994183961 1.183416641 0.930118613 1 11.90618937 -7.262804933 24.99543072 1.030164559 0.939483265 0.021667705 0.095166029 168.1972086 3078707.012 0.015840357 0.018650841 5.46E-08 7.262804933 -0.090681294 IAEFTTNLTEEEEK ddPTM_HeLa_CUDC101_4h_R1 4 IAEFTTNLTEEEEK 14 0 P35579 P35579 MYH9 Myosin-9 0 0 ;;; ;;; 270.27 4.55E-85 48370500 7120.3 5239.73 5096.01 5288.02 5509.01 5260.61 5298.77 4763.97 6166.54 6292.4 FALSE FALSE TRUE 6285.669228 5401.159871 5371.515715 5503.688312 5102.621308 5160.272629 5503.145334 5306.281088 5912.352611 6254.972525 1.004907568 0.863498576 0.858759282 0.879890086 0.815770379 0.824987257 0.879803278 0.848330039 0.945224393 1 12.61078783 -7.242496499 5.293892206 1.002557778 0.85211539 0.831684172 0.026482232 0.031465662 2.800070168 0.003306983 0.003969701 5.72E-08 7.242496499 -0.150442387 IAEK(ac)GSTIETEQK ddPTM_HeLa_CUDC101_4h_R1 2 IAEKGSTIETEQK 13 1 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 0 1 ; IAEK(1)GSTIETEQK;IAEK(1)GSTIETEQK 221.09 8.63E-23 2081750 862.27 965.26 1010.39 1125.05 1277.6 1251.55 986.91 1020.35 986.2 969.25 FALSE TRUE FALSE 761.1960177 994.9985165 1065.01474 1170.934402 1183.353993 1227.678769 1024.975449 1136.50252 945.5484186 963.4848579 0.790044609 1.032707996 1.105377766 1.215311681 1.228201963 1.274206604 1.063821025 1.179574863 0.981383787 1 9.912118183 -6.829158339 2.394555689 0.901453494 1.18777471 0.688511146 0.077081528 0.12874206 1.511345322 0.015846098 0.02192214 1.48E-07 6.829158339 0.286321216 IAEK(ac)GSTIETEQKEDKGEDSEPVTSK ddPTM_HeLa_CUDC101_4h_R1 1 IAEKGSTIETEQKEDKGEDSEPVTSK 26 3 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 0 1 IAEK(0.945)GSTIETEQK(0.055)EDK(0.001)GEDSEPVTSK 60.104 0.0023908 2673300 651.04 836.83 955.48 879.6 1096.4 1230 903.64 1141 747.71 754.17 FALSE TRUE FALSE 574.7260781 862.6117404 1007.136139 915.47389 1015.520756 1206.539799 938.4936975 1270.886828 716.8890773 749.6841633 0.766624275 1.150633537 1.343413918 1.221146097 1.354598118 1.609397475 1.251852104 1.695229658 0.956254797 1 9.550139116 -6.904860581 2.228756959 0.88998042 1.413234838 0.696948818 0.149543365 0.121353006 1.223632892 0.026509104 0.035824343 1.24E-07 6.904860581 0.523254418 AQGEPVAGHES(ph)PKIPYEK ddPTM_HeLa_CUDC101_4h_R1 4 AQGEPVAGHESPKIPYEK 18 1 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H7BXG7;O94979-7;O94979-6;O94979-10;O94979-4;H0YAB3 D6REX3 SEC31A Protein transport protein Sec31A 1 0 AQGEPVAGHES(0.995)PKIPY(0.005)EK;AQGEPVAGHES(0.995)PKIPY(0.005)EK;AQGEPVAGHES(0.999)PKIPY(0.001)EK;AQGEPVAGHES(0.862)PKIPY(0.138)EK ;;; 88.168 0.003339 2623480000 30127.2 29921.3 30422.8 29699.8 30949.1 28119.9 28417.2 26957.6 28468.3 28361.4 TRUE FALSE FALSE 26595.73529 30843.13979 32067.54859 30911.08622 28666.04655 27583.55976 29513.26092 30026.34422 27294.82462 28192.70513 0.943355211 1.094011364 1.13744135 1.096421435 1.0167895 0.978393511 1.046840336 1.065039487 0.968152027 1 14.78303429 -7.262757577 24.9958653 0.973251071 1.060796042 0.483186645 0.043384009 88.34505313 1675203.485 0.008546329 0.010055942 5.46E-08 7.262757577 0.087544971 IAGQVAAANK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 IAGQVAAANKK 11 1 P39019;A0A075B6E2 P39019 RPS19 40S ribosomal protein S19 0 1 IAGQVAAANK(1)K 145.72 0.00014231 973890 772.46 658.51 454.81 693.39 628.02 560.16 638.88 425.32 578.73 371.88 FALSE TRUE FALSE 681.9134098 678.7979126 479.3984043 721.6694413 581.6922158 549.4758813 663.5218156 473.7367096 554.8745044 369.6680412 1.844664222 1.836236398 1.296834865 1.952209444 1.573552893 1.48640353 1.794912575 1.281519246 1.501007506 1 8.530086514 -9.38476281 1.078947053 0.995483671 1.653397332 0.159264437 0.265071841 0.296332418 0.61046558 0.148735184 0.037146138 4.12E-10 9.38476281 0.657913662 IAHFLDR ddPTM_HeLa_CUDC101_4h_R1 2 IAHFLDR 7 0 P60228;E5RIP5;E5RJ25;E5RII3;H0YBR5;E5RHS5 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E 0 0 ; ; 124.59 0.00055655 7681100 14606.5 9974.9 6106.2 10064.7 10155.5 9928.2 8609.1 8794 8327 4243.1 FALSE FALSE TRUE 12894.34821 10282.21485 6436.319642 10475.18197 9406.348998 9738.836127 8941.155871 9795.073413 7983.757536 4217.861852 3.057081683 2.437778952 1.52596739 2.483528939 2.23012259 2.308950949 2.11983137 2.322284076 1.89284472 1 12.04229613 IAIVNHDK ddPTM_HeLa_CUDC101_4h_R1 1 IAIVNHDK 8 0 D6R9I9;P61221;D6RGF4 D6R9I9 ABCE1 ATP-binding cassette sub-family E member 1 0 0 83.206 0.03541 6306100 3018.7 2447.8 2558.4 2756.8 2615.2 2579.2 2419.6 2493.9 2598.1 2256.9 FALSE FALSE TRUE 2664.852562 2523.213817 2696.714843 2869.23422 2422.281906 2530.006057 2512.924783 2777.795495 2491.005218 2243.475858 1.18782315 1.124689534 1.202025345 1.278923599 1.079700455 1.127717086 1.120103331 1.238165985 1.110332972 1 11.13151994 -9.266858961 0.795523208 0.989701359 1.168843342 0.268998726 0.06594215 0.450415599 0.465087325 0.051854515 0.011336217 5.41E-10 9.266858961 0.179141983 EQEPIGTDLDAVRT(ph)PEPLEEFPK ddPTM_HeLa_CUDC101_4h_R1 1 EQEPIGTDLDAVRTPEPLEEFPK 23 1 P10244-2;P10244 P10244-2 MYBL2 Myb-related protein B 1 0 EQEPIGT(0.01)DLDAVRT(0.99)PEPLEEFPK 72.99 0.0019179 5577500 2597.3 1902.8 1848.8 2024.5 2007.1 2178 2067.9 2024.9 2125.5 2137.5 TRUE FALSE FALSE 2292.848431 1961.423013 1948.75172 2107.067861 1859.040232 2136.458279 2147.659596 2255.406431 2037.88599 2124.786055 1.07909614 0.923115533 0.917151972 0.991661187 0.87493055 1.005493364 1.010765103 1.061474602 0.959101734 1 11.05310187 -7.26272859 24.99833525 1.037350955 0.967453043 0.057376316 0.05921673 127.2419121 2467262.512 0.009918914 0.011673965 5.46E-08 7.26272859 -0.069897912 GDAASS(ph)PAPAASVGS(ph)SQGGAR ddPTM_HeLa_CUDC101_4h_R1 1 GDAASSPAPAASVGSSQGGAR 21 0 F8WCC1;E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2 F8WCC1 CHTF18 Chromosome transmission fidelity protein 18 homolog 2 0 GDAAS(0.03)S(0.97)PAPAAS(0.095)VGS(0.758)S(0.147)QGGAR 122.53 7.86E-06 8177100 1737.8 1185.5 1318.9 1008.7 1812.1 1577.6 1323.3 746.76 1313.4 1362.5 TRUE FALSE FALSE 1534.097718 1222.02385 1390.203723 1049.839146 1678.424993 1547.509908 1374.340124 831.7681399 1259.261096 1354.395789 1.132680514 0.90226495 1.026438309 0.775134679 1.239242625 1.142583225 1.014725633 0.614124871 0.929758573 1 10.40343368 -7.262391972 24.74932623 1.062654684 0.974679516 0.003414946 0.17436176 184.2321785 4786534.141 0.028623854 0.033726468 5.47E-08 7.262391972 -0.087975168 IALLEEAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 IALLEEAKK 9 1 A0A2R8Y7M3;A0A2R8Y5S7;P35241-4;P35241;P35241-5;P35241-2 A0A2R8Y7M3 RDX Radixin 0 1 ; IALLEEAK(1)K;IALLEEAK(1)K 108.98 0.0045922 518960 679.62 189.07 95.575 242.48 468.44 424.97 437.68 393.59 342.39 360.801 FALSE TRUE FALSE 599.9559738 194.8950226 100.7420736 252.3693825 433.8841145 416.8644053 454.5614642 438.3946947 328.2765393 358.6549396 1.672794398 0.543405377 0.280888571 0.703655114 1.209753628 1.162299356 1.267406117 1.222330006 0.915299088 1 8.48645269 -7.262875645 24.99880264 1.317708459 0.915123749 0.084661827 0.366126624 176.9026507 3079056.763 0.071419188 0.084048301 5.46E-08 7.262875645 -0.402584711 IAPAVVHIELFR ddPTM_HeLa_CUDC101_4h_R1 1 IAPAVVHIELFR 12 0 Q92743;A0A3B3IU24 Q92743 HTRA1 Serine protease HTRA1 0 0 81.625 0.021291 454690 0 187.02 0 233.74 61.09 123.99 126.45 147.65 181.31 0 FALSE FALSE TRUE 0 192.7818645 0 243.2729275 56.58351241 121.6250973 131.3272189 164.4578792 173.8363251 0 0 IAQLEEELEEEQGNTELINDR ddPTM_HeLa_CUDC101_4h_R1 3 IAQLEEELEEEQGNTELINDR 21 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;; ;; 228.65 1.07E-35 98534200 17916.9 15599.3 15115.1 15068.2 17334.2 17092.6 15459.1 14808.9 16699.3 16540.3 FALSE FALSE TRUE 15816.70814 16079.89594 15932.26803 15682.74633 16055.4906 16766.58713 16055.36267 16494.68532 16010.94779 16441.91756 0.961974665 0.977981789 0.969003036 0.953827087 0.976497452 1.019746454 0.976489671 1.003209343 0.973788351 1 14.00509094 IAQLEEQLDNETK ddPTM_HeLa_CUDC101_4h_R1 1 IAQLEEQLDNETK 13 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 214 2.81E-23 7192700 1394.2 1156.7 996.11 996.57 1109.6 835.7 1016.9 694.23 1220.1 1158 FALSE FALSE TRUE 1230.773989 1192.336556 1049.96272 1037.214432 1027.747019 819.7604149 1056.122174 773.258337 1169.806962 1151.112164 1.069204225 1.035812663 0.912128941 0.901054184 0.892829605 0.712146427 0.917479813 0.671748906 1.016240639 1 10.1688127 -6.021657441 0.921075044 1.034431052 0.774840845 0.700154893 0.068573422 0.221451098 0.366088403 0.01164863 0.030819534 9.51E-07 6.021657441 -0.259590206 IAQLEEQLDNETKER ddPTM_HeLa_CUDC101_4h_R1 2 IAQLEEQLDNETKER 15 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 178.67 1.88E-07 17347700 2660.7 2700.3 2318.1 2677.3 3605.2 2685.7 2617.7 3762.1 2817.6 1776.7 FALSE FALSE TRUE 2348.816779 2783.493042 2443.423498 2786.491866 3339.251579 2634.474747 2718.665566 4190.362257 2701.457335 1766.132109 1.329921339 1.576038977 1.38348852 1.577736938 1.890714495 1.491663468 1.539333072 2.372621071 1.529589616 1 10.78637755 -1 0.103323248 0.644451271 4.632017163 0.411294577 0.26280375 46.48153452 0.340527169 1.464637957 26.43413201 0.1 1 3.987565892 SFSEDAVTDSSGSGT(ph)LPR ddPTM_HeLa_CUDC101_4h_R1 2 SFSEDAVTDSSGSGTLPR 18 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 SFSEDAVT(0.001)DS(0.004)S(0.313)GS(0.21)GT(0.472)LPR;SFSEDAVT(0.002)DS(0.076)S(0.224)GS(0.015)GT(0.683)LPR ; 260.56 8.24E-70 16466100 3280.6 1862.25 2130.01 2262.98 2372 2351 2338.95 1652.17 2144.88 2384.59 TRUE FALSE FALSE 2896.053041 1919.623715 2245.164784 2355.274106 2197.022286 2306.158592 2429.164085 1840.246354 2056.467139 2370.406353 1.22175383 0.809828962 0.947164515 0.99361618 0.926854707 0.972895887 1.024788042 0.776342146 0.867558905 1 11.21091868 -7.262375397 24.99999844 1.104717086 0.931530411 0.049648789 0.115901231 67.1262734 1792862.223 0.017784298 0.020973824 5.47E-08 7.262375397 -0.173186675 QQPPEPEWIGDGES(ph)TSPSDKVVK ddPTM_HeLa_CUDC101_4h_R1 2 QQPPEPEWIGDGESTSPSDKVVK 23 1 Q8NE71;Q5STZ8;Q8NE71-2;A0A0G2JIC2 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 QQPPEPEWIGDGES(0.398)T(0.295)S(0.287)PS(0.02)DKVVK;QQPPEPEWIGDGES(0.845)T(0.124)S(0.03)PS(0.001)DKVVK ; 77.169 0.00057977 99662000 5907.2 6371.7 5961 5686.4 6959.3 6551.1 5840.6 6159.1 6227.5 5636.4 TRUE FALSE FALSE 5214.766971 6568.004525 6283.269691 5918.315971 6445.926304 6426.148682 6065.873898 6860.227048 5970.799814 5602.874442 0.93073065 1.17225624 1.121436819 1.056299946 1.150467741 1.146937835 1.082636058 1.224412062 1.065667253 1 12.45195145 -7.262309984 24.99959268 0.967289472 1.131581483 0.540462017 0.055780875 29.76433879 854685.5203 0.008061784 0.009506308 5.47E-08 7.262309984 0.164292011 S(ph)TTAHSWQR ddPTM_HeLa_CUDC101_4h_R1 1 STTAHSWQR 9 0 Q9UKJ3;Q9UKJ3-2 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 1 0 S(0.789)T(0.157)T(0.053)AHSWQR 73.666 0.037282 9213600 1966.8 2067.5 1816.5 2680.3 2570.4 2637.4 2380 1381.4 2396.6 1428.6 TRUE FALSE FALSE 1736.254685 2131.197224 1914.705485 2789.614219 2380.786713 2587.095989 2471.797397 1538.652992 2297.811134 1420.102624 1.222626208 1.500734657 1.348286703 1.96437509 1.676489201 1.821766925 1.740576601 1.083480142 1.618059917 1 10.47177947 -7.26204396 0.977153979 1.064274644 1.659103724 0.107902282 0.29043139 0.264268642 0.499165169 0.050009811 0.059459996 5.47E-08 7.26204396 0.59482908 NEYPEEES(ph)SDGDEDSR ddPTM_HeLa_CUDC101_4h_R1 2 NEYPEEESSDGDEDSR 16 0 Q96CW6;I3L4S1 Q96CW6 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS 1 0 NEYPEEES(0.605)S(0.395)DGDEDSR;NEYPEEES(0.65)S(0.35)DGDEDSR ; 182.17 1.20E-10 2740900 2155.38 1564.46 1478.12 1696.51 1377.17 1396.58 1097.72 648.44 1696.01 1911.31 TRUE FALSE FALSE 1902.729624 1612.659158 1558.031638 1765.701011 1275.578913 1369.942563 1140.059428 722.2557885 1626.09975 1899.941443 1.001467509 0.848794137 0.820041925 0.929344963 0.671378014 0.721044624 0.600049771 0.380146341 0.855868351 1 10.89173924 -4.280480035 0.380588553 1.012643502 1.22E-18 0.814373855 0.07936228 1.150109221 0.115224483 0.018302857 0.530187207 5.24E-05 4.280480035 -1.012643502 down FS(ph)LS(ph)T(ph)SMGAVHGT(ph)PKTITHNRDPK ddPTM_HeLa_CUDC101_4h_R1 1 FSLSTSMGAVHGTPKTITHNRDPK 24 2 Q16385-2 Q16385-2 4 0 FS(0.741)LS(0.741)T(0.741)S(0.741)MGAVHGT(0.703)PKT(0.165)IT(0.165)HNRDPK 41.521 0.0032899 0 964.67 634.69 705.85 657.33 642.5 721.9 584.84 876.21 751.7 769.52 TRUE FALSE FALSE 851.5928449 654.2440466 744.0103861 684.1387586 595.104055 708.1309603 607.3974747 975.9542046 720.7146078 764.9428608 1.113276414 0.855284859 0.972635244 0.894365833 0.777971906 0.92573053 0.794042936 1.275852426 0.942180972 1 9.579208176 -7.262034339 24.99994267 1.05349164 0.917399909 0.063001252 0.137651791 65.05226648 2733437.06 0.021334404 0.025196088 5.47E-08 7.262034339 -0.136091731 STS(ph)DTDLVTSDSR ddPTM_HeLa_CUDC101_4h_R1 1 STSDTDLVTSDSR 13 0 Q76N89-2;Q76N89 Q76N89-2 HECW1 E3 ubiquitin-protein ligase HECW1 1 0 S(0.001)T(0.003)S(0.995)DTDLVTSDSR 164.92 3.67E-11 0 1129.6 823.32 794.62 718.47 852.33 923.41 989.2 745 836.21 992.15 TRUE FALSE FALSE 997.1900004 848.6855133 837.5795608 747.7723121 789.455314 905.7974928 1027.353775 829.8077886 801.7410699 986.2486477 1.011093909 0.860518811 0.849258007 0.758198568 0.800462759 0.918427107 1.04167826 0.841377872 0.812919817 1 9.945807607 -7.26195209 24.79133217 1.005238793 0.868376492 0 0.093538505 29.70629126 1436390.344 0.012866508 0.015187511 5.47E-08 7.26195209 -0.136862301 ICATFDTPNAK(ac)GK(ac)DWQMLAQK ddPTM_HeLa_CUDC101_4h_R1 1 ICATFDTPNAKGKDWQMLAQK 21 2 E9PDS8;H7BXJ2;C9J1I0;C9J2B6;Q6UXZ4-2;Q6UXZ4 E9PDS8 UNC5D Netrin receptor UNC5D 0 2 ICATFDTPNAK(1)GK(1)DWQMLAQK 44.816 0.02734 1162700 0 0 153.49 0 341.94 430.32 215.66 199.78 0 0 FALSE TRUE FALSE 0 0 161.7881337 0 316.7157674 422.112363 223.9780784 222.5221477 0 0 0 ICHQIEYYFGDFNLPR ddPTM_HeLa_CUDC101_4h_R1 1 ICHQIEYYFGDFNLPR 16 0 P05455;E7ERC4;E9PFL9 P05455 SSB Lupus La protein 0 0 95.654 0.0054803 10801000 1234.2 1217.5 1082.3 1160.2 1158.7 1544.8 1366.5 1189.8 1295.4 1297.8 FALSE FALSE TRUE 1089.528947 1255.009732 1140.812412 1207.517971 1073.225009 1515.335514 1419.206363 1325.242023 1242.003064 1290.080628 0.844543297 0.972814958 0.884295436 0.93600194 0.831905376 1.174605277 1.100091213 1.027255192 0.9627329 1 10.33324552 -5.258603476 24.99742701 0.920575862 1.100594627 0.65290217 0.06071943 136.8320928 1206114.576 0.010039212 0.024386177 5.51E-06 5.258603476 0.180018766 GGSISVQVNSIKFDS(ph)E ddPTM_HeLa_CUDC101_4h_R1 5 GGSISVQVNSIKFDSE 16 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 GGSISVQVNS(0.009)IKFDS(0.991)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNSIKFDS(1)E ;;;; 145.79 0.00021781 922171000 20365.27 19803.63 18619.27 18911.3 21800.89 20704.81 19057.19 19689.84 20288.46 18423.57 TRUE FALSE FALSE 17978.08392 20413.75637 19625.88406 19682.58456 20192.68178 20309.90025 19792.2322 21931.2518 19452.16109 18313.98579 0.981658724 1.114653937 1.071633684 1.074729706 1.102582584 1.108983074 1.080716805 1.197513859 1.062147875 1 14.16065819 -7.261894903 24.99911735 0.99133884 1.10350334 0.496471108 0.040667743 15.56965727 854461.0812 0.005459352 0.006448691 5.47E-08 7.261894903 0.1121645 SSPAPSENTHIS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 1 SSPAPSENTHISPLK 15 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 SSPAPSENT(0.008)HIS(0.992)PLK 115.38 0.0015291 5466500 2656.4 1866.5 1647.4 1831.1 2538.6 2192.3 1724.5 1911.8 2177.2 2226 TRUE FALSE FALSE 2345.020819 1924.004653 1736.463427 1905.780173 2351.332536 2150.48553 1791.014543 2129.431584 2087.454894 2212.759653 1.059772043 0.86950458 0.784750131 0.861268493 1.062624462 0.971856807 0.809403109 0.962342015 0.943371727 1 11.11163104 -7.261734259 24.99998781 1.028225688 0.902121221 0.207736346 0.082673067 22.63374653 1918850.918 0.013940713 0.016470865 5.47E-08 7.261734259 -0.126104467 S(ph)SPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR ddPTM_HeLa_CUDC101_4h_R1 2 SSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR 36 1 P40222 P40222 TXLNA Alpha-taxilin 1 0 S(0.5)S(0.5)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR;S(0.499)S(0.499)PGQPEAGPEGAQERPS(0.002)QAAPAVEAEGPGSSQAPR ; 118.85 9.40E-19 263870000 186.55 372.16 416.75 403.46 392.8 373.1 368.61 310.09 375.81 157.71 TRUE FALSE FALSE 164.6828918 383.6258085 439.2807656 419.9148427 363.8239266 365.9837391 382.8274112 345.3893922 360.3189527 156.7719339 1.05046157 2.447031168 2.80203704 2.678507768 2.320721047 2.334497828 2.441938437 2.203132816 2.298363896 1 7.292523494 -7.261664945 6.748258707 1.022365214 2.473504557 0.457962362 0.435364399 0.022005847 6.14416199 0.029333795 0.034687778 5.47E-08 7.261664945 1.451139343 AGGLDWPEATEVS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 2 AGGLDWPEATEVSPSR 16 0 Q9Y446;Q9Y446-2;E9PKC4;E9PK71;E9PJR7;E9PRW6 Q9Y446 PKP3 Plakophilin-3 1 0 AGGLDWPEATEVS(0.984)PS(0.016)R;AGGLDWPEATEVS(0.989)PS(0.011)R ; 263.04 4.47E-70 194664000 5270.5 4513.3 4001 4220.5 4996.7 4551.2 3987.6 3937.9 5525.5 4866.5 TRUE FALSE FALSE 4652.69998 4652.349423 4217.306162 4392.630233 4628.103396 4464.393443 4141.403068 4386.174618 5297.736551 4837.553842 0.961787741 0.961715275 0.871784853 0.908027151 0.956703232 0.922861758 0.856094465 0.906692672 1.09512715 1 12.240062 -7.261616733 0.383439112 1.003602677 0.888864539 0.581012001 0.042367814 0.537853428 0.219513886 0.018783883 0.021811254 5.47E-08 7.261616733 -0.114738138 APSDS(ph)SLGTPSDGRPELR ddPTM_HeLa_CUDC101_4h_R1 2 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 APS(0.001)DS(0.454)S(0.454)LGT(0.04)PS(0.051)DGRPELR;APS(0.269)DS(0.595)S(0.136)LGTPSDGRPELR ; 143.23 5.11E-05 62077000 2725.8 2186.48 2097.19 2289.1 2338.1 2203.9 2302 2068.43 2551.6 2398.5 TRUE FALSE FALSE 2406.285856 2253.842857 2210.570435 2382.459392 2165.623021 2161.864279 2390.788911 2303.89171 2446.421968 2384.233615 1.009249195 0.945311249 0.927161844 0.999255852 0.90830991 0.906733411 1.002749435 0.966302839 1.026083162 1 11.21930989 -7.261604678 24.99544875 1.004367676 0.950449387 0.429547142 0.031841323 11.00668958 1664357.078 0.005189212 0.006139694 5.48E-08 7.261604678 -0.053918289 ILDT(ph)MY(ph)PELSARAR ddPTM_HeLa_CUDC101_4h_R1 1 ILDTMYPELSARAR 14 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 2 0 ILDT(0.999)MY(0.999)PELS(0.002)ARAR 80.706 0.0018396 0 707.75 398.21 280.01 344.73 471.73 585.5 496.45 524.98 590.97 553.11 TRUE FALSE FALSE 624.7886179 410.4783781 295.1481876 358.7895795 436.9314177 574.332563 515.5982428 584.7416012 566.6099665 549.8200771 1.136351043 0.746568551 0.536808676 0.652558163 0.794680725 1.044582741 0.937758122 1.063514458 1.030537061 1 9.102815779 -7.26151553 24.99999998 1.064387994 0.819069334 0.308837086 0.15761198 6.478336632 2126722.964 0.029832611 0.035297716 5.48E-08 7.26151553 -0.24531866 IDAAEGPSDIPD ddPTM_HeLa_CUDC101_4h_R1 2 IDAAEGPSDIPD 12 0 P42771-2;P42771 P42771-2 CDKN2A Cyclin-dependent kinase inhibitor 2A 0 0 ; ; 133.23 0.0080941 238690000 33269 29714 28872 28657 32008 28730 29351 29840 29625 29887 FALSE FALSE TRUE 29369.25825 30629.45312 30432.90765 29825.75633 29646.83361 28182.02312 30483.0779 33236.86498 28403.84496 29709.23079 0.98855667 1.03097429 1.024358653 1.0039222 0.997899737 0.948594843 1.026047363 1.118738658 0.956061271 1 14.85862363 -4.312870076 3.585561035 0.997416473 1.126702177 0.692119371 0.024906496 0.090362188 2.009964406 0.002958938 0.028422441 4.87E-05 4.312870076 0.129285704 YIEIDS(ph)DEEPRGELLSLR ddPTM_HeLa_CUDC101_4h_R1 3 YIEIDSDEEPRGELLSLR 18 1 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 0 Y(0.001)IEIDS(0.999)DEEPRGELLSLR;Y(0.003)IEIDS(0.997)DEEPRGELLSLR;Y(0.001)IEIDS(0.999)DEEPRGELLSLR ;; 103.73 0.00069855 194929000 5805.2 6267.3 5512.8 5988.4 6875.8 7323.7 5786.9 5167.9 5811.4 5512 TRUE FALSE FALSE 5124.723256 6460.388084 5810.838643 6232.632836 6368.585933 7184.012625 6010.102671 5756.192847 5571.851632 5479.214379 0.935302564 1.179071969 1.060524054 1.137504833 1.162317349 1.311139176 1.096891316 1.050550763 1.016907032 1 12.41975334 -7.26148286 25 0.969448431 1.144706737 0.501210827 0.071994984 2.144396424 1232741.445 0.012374118 0.014631345 5.48E-08 7.26148286 0.175258306 TTTPPDS(ph)GVLFEGLGISTRPR ddPTM_HeLa_CUDC101_4h_R1 1 TTTPPDSGVLFEGLGISTRPR 21 1 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 T(0.169)T(0.03)T(0.023)PPDS(0.777)GVLFEGLGISTRPR 103.99 5.63E-05 33010000 944.61 967.45 1082 1043.4 943.46 1062.2 934.85 768.19 830.77 832.94 TRUE FALSE FALSE 833.8842477 997.2559878 1140.496193 1085.954362 873.8628354 1041.940305 970.9074777 855.6376445 796.525309 827.9856358 1.007124051 1.204436339 1.377434757 1.311561837 1.055408207 1.258403841 1.172613915 1.033396725 0.962003777 1 9.693461929 -7.261457006 7.266119329 1.003212554 1.208474949 0.486948282 0.099371964 0.082863226 33.7121535 0.016788522 0.019856765 5.48E-08 7.261457006 0.205262395 LRTAYLRAEDS(ph)EREK ddPTM_HeLa_CUDC101_4h_R1 1 LRTAYLRAEDSEREK 15 3 Q96ER9-2;Q96ER9 Q96ER9-2 CCDC51 Coiled-coil domain-containing protein 51 1 0 LRTAYLRAEDS(1)EREK 77.192 0.0032098 0 1301.7 1306.7 1260 1266.6 1456.7 1384.8 1188.6 995.87 1229.3 1251.3 TRUE FALSE FALSE 1149.116699 1346.957878 1328.119411 1318.257423 1349.242143 1358.387247 1234.4447 1109.235815 1178.627734 1243.857212 0.923833289 1.082887863 1.067742663 1.059814109 1.0847243 1.092076513 0.992432804 0.891771021 0.947558709 1 10.28060517 -7.261418484 25 0.964032387 1.042736085 0.280688514 0.05935363 2.016500703 2413665.381 0.010815479 0.012797118 5.48E-08 7.261418484 0.078703698 IDASKNEEDEGHSNSSPR ddPTM_HeLa_CUDC101_4h_R1 1 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 0 64.327 0.017568 15055000 1579.4 1093.1 1280.8 1094.6 1922.2 1454.2 1375.6 1787.6 1764.9 1509.1 FALSE FALSE TRUE 1394.265126 1126.777115 1350.043922 1139.242519 1780.403136 1426.463558 1428.657353 1991.093158 1692.150075 1500.123806 0.929433371 0.751122748 0.899955002 0.759432331 1.186837465 0.950897221 0.95235963 1.327285888 1.128006947 1 10.55086586 IDDDDDERENFEITDWDLQNEFNPNR ddPTM_HeLa_CUDC101_4h_R1 2 IDDDDDERENFEITDWDLQNEFNPNR 26 1 Q9UBB9;F6XM96;F6UKU9;F6SQZ1;F6UQ07 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 0 0 ; ; 112.41 1.20E-07 26874000 2671.35 1981.73 2332.9 1903.49 2378.64 1933.39 1985.39 1940.96 2627.53 2408.67 FALSE FALSE TRUE 2358.218403 2042.784752 2459.023631 1981.12255 2203.172466 1896.513807 2061.967157 2161.911041 2519.222101 2394.343124 0.984912471 0.853171265 1.027013884 0.82741798 0.920157368 0.792081046 0.861182818 0.902924489 1.05215584 1 11.2254142 -6.696104975 0.665202536 0.998312695 0.853155761 0.491214578 0.060792574 0.396566129 0.358482157 0.012915233 0.023290864 2.01E-07 6.696104975 -0.145156934 IDDPTDSKPEDWDKPEHIPDPDAK ddPTM_HeLa_CUDC101_4h_R1 2 IDDPTDSKPEDWDKPEHIPDPDAK 24 2 P27797;K7EJB9;K7EL50 P27797 CALR Calreticulin 0 0 ; ; 68.42 0.00029176 241890000 18201.6 15233.2 16537.3 15690.2 16995.5 15592.4 15695.7 15215.5 16637.2 18939.9 FALSE FALSE TRUE 16068.03604 15702.51684 17431.35646 16330.11417 15741.77582 15295.00095 16301.08841 16947.57102 15951.40757 18827.24463 0.853445969 0.834031593 0.925858074 0.867366123 0.836116815 0.812386584 0.865824433 0.900162044 0.847251304 1 14.20053426 -9.239040768 0.68559066 1.014268721 0.859044514 0 0.056580156 0.380426498 0.276871187 0.034969106 0.006925717 5.77E-10 9.239040768 -0.155224207 SGS(ph)PVATFK ddPTM_HeLa_CUDC101_4h_R1 1 SGSPVATFK 9 0 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 1 0 S(0.009)GS(0.99)PVATFK 89.9 0.028814 32280000 5743.7 5351 5340.7 5200.7 5854.2 5344.7 4785 5486.1 5256.1 5235.2 TRUE FALSE FALSE 5070.432193 5515.857968 5629.434397 5412.807025 5422.347329 5242.758752 4969.559053 6110.615448 5039.441333 5204.060798 0.974322244 1.059914206 1.081738784 1.040112181 1.041945423 1.007436107 0.9549387 1.174201395 0.968367114 1 12.3454221 -7.261402442 24.99998999 0.987874392 1.046424292 0.262890837 0.053307504 3.761250566 2546111.21 0.008432694 0.009977796 5.48E-08 7.261402442 0.0585499 TDS(ph)QTIGDFATR ddPTM_HeLa_CUDC101_4h_R1 1 TDSQTIGDFATR 12 0 Q13480-2 Q13480-2 GAB1 GRB2-associated-binding protein 1 1 0 T(0.002)DS(0.499)QT(0.499)IGDFATR 161.49 0.00010402 8722700 1591.5 1083.2 1068.6 1201.9 1172.9 1270.1 1222.3 1222 1312.8 1242.9 TRUE FALSE FALSE 1404.946783 1116.572108 1126.371748 1250.918677 1086.377504 1245.874959 1269.44452 1361.107541 1258.685828 1235.507176 1.137141743 0.903735834 0.911667508 1.012473826 0.879296798 1.00839152 1.027468351 1.101658952 1.018760436 1 10.27088767 -7.261354488 25 1.064761378 0.975899093 0.177591627 0.07147215 9.021669357 2656837.029 0.013582729 0.016082158 5.48E-08 7.261354488 -0.088862285 TKDS(ph)GSISLQETR ddPTM_HeLa_CUDC101_4h_R1 2 TKDSGSISLQETR 13 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 TKDS(0.436)GS(0.436)IS(0.127)LQETR;T(0.004)KDS(0.477)GS(0.477)IS(0.042)LQETR ; 193.45 1.27E-15 56074000 5591.3 3124.8 4056.8 3957.9 3778.9 3997.4 3374.5 4863.4 3623 3538 TRUE FALSE FALSE 4935.89629 3221.071384 4276.122879 4119.32027 3500.138076 3921.156255 3504.655595 5417.029797 3473.658407 3516.955819 1.403457008 0.915869164 1.215859141 1.171274387 0.995218097 1.114929063 0.996502594 1.540260975 0.987688952 1 11.7801115 -7.261322846 24.99996982 1.190521357 1.12859707 0 0.195541057 46.4589211 9966777.888 0.034951321 0.041356239 5.48E-08 7.261322846 -0.061924287 IDEPLEGSEDR ddPTM_HeLa_CUDC101_4h_R1 4 IDEPLEGSEDR 11 0 P61978;P61978-2;P61978-3;S4R359 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ;;; ;;; 246.86 1.50E-54 967580000 9087.7 8195.9 8197.2 7901 7874.3 7642.5 7671.3 7406.5 7977.1 8417.8 FALSE FALSE TRUE 8022.453582 8448.405964 8640.365427 8223.236931 7293.428577 7496.732046 7967.184611 8249.626022 7648.280562 8367.730551 0.958737083 1.009641254 1.032581699 0.982732042 0.871613699 0.895909829 0.95213207 0.985885716 0.914020894 1 13.03062068 -5.909700282 12.32466411 0.987148197 0.926075601 0.308461571 0.041258309 0.454910791 59.7312755 0.005549531 0.010062128 1.23E-06 5.909700282 -0.061072596 S(ph)PSSDSWTCADTSTER ddPTM_HeLa_CUDC101_4h_R1 2 SPSSDSWTCADTSTER 16 0 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHH7;Q8N6T3-4;H0YIQ0 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 S(1)PSSDSWTCADTSTER;S(0.999)PSSDSWTCADTSTER ; 259.68 7.32E-70 146030000 1290.11 999 938.72 893.49 1170.06 1148.92 1056.22 980.22 1080.06 1108.53 TRUE FALSE FALSE 1138.885261 1029.778006 989.4700427 929.9303842 1083.747005 1127.006265 1096.958759 1091.804283 1035.53947 1101.936414 1.033530834 0.934516722 0.897937512 0.843905667 0.983493231 1.022750724 0.995482811 0.990805158 0.939745212 1 10.10582526 -7.261286571 24.99999596 1.015834005 0.951932516 0.03931798 0.055372355 15.94031418 2608039.946 0.009393257 0.011135312 5.48E-08 7.261286571 -0.06390149 HTDDEMTGY(ph)VATR ddPTM_HeLa_CUDC101_4h_R1 4 HTDDEMTGYVATR 13 0 E7EX54;B4E0K5;Q16539-5;Q16539-3;Q16539-4;Q16539-2;Q16539 E7EX54 MAPK14 Mitogen-activated protein kinase 14 1 0 HTDDEMT(0.001)GY(0.998)VAT(0.001)R;HTDDEMT(0.001)GY(0.998)VAT(0.001)R;HTDDEMTGY(1)VATR;HTDDEMTGY(1)VATR ;;; 201.09 7.09E-16 179042000 18967.4 10406.1 10735.9 10243.7 8650.8 8806.5 11772.9 21848.8 13464.8 14619.9 TRUE FALSE FALSE 16744.07012 10726.69961 11316.31523 10661.48236 8012.647719 8638.530685 12226.9847 24335.97908 12909.77524 14532.94018 1.152146084 0.738095628 0.778666607 0.733608081 0.551343886 0.594410393 0.841329046 1.674539272 0.888311318 1 13.82703899 -7.261214525 24.99845008 1.071846763 0.81674372 0.046105111 0.302676225 30.4609153 3386567.464 0.049803841 0.058958925 5.48E-08 7.261214525 -0.255103042 KAEGEPQEESPLKS(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 KAEGEPQEESPLKSK 15 2 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 KAEGEPQEES(0.031)PLKS(0.969)K;KAEGEPQEES(0.005)PLKS(0.995)K ; 97.352 0.0058259 734210000 6763.5 6599.3 6930.4 6827.4 6857.1 6544.9 7117.5 5200.6 7123.8 6075.2 TRUE FALSE FALSE 5970.692783 6802.616611 7305.078387 7105.850883 6351.265394 6420.066937 7392.024359 5792.615282 6830.153949 6039.06444 0.988678436 1.126435506 1.20963743 1.176647634 1.051696907 1.063089656 1.224034688 0.959190838 1.130995375 1 12.56010935 -7.261172204 24.99096065 0.994653704 1.121434783 0.071499659 0.086385112 17.37550827 1625276.414 0.011872981 0.014062134 5.48E-08 7.261172204 0.126781079 VTQHES(ph)DNENEIQIQNK ddPTM_HeLa_CUDC101_4h_R1 5 VTQHESDNENEIQIQNK 17 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 VT(0.004)QHES(0.996)DNENEIQIQNK;VT(0.008)QHES(0.992)DNENEIQIQNK;VT(0.08)QHES(0.92)DNENEIQIQNK;VT(0.064)QHES(0.936)DNENEIQIQNK;VT(0.02)QHES(0.98)DNENEIQIQNK ;;;; 245.97 7.83E-56 308065000 20600.1 16656.3 16131.3 15815.5 18238.7 17771.2 17756.5 15697.7 17665.6 18097.7 TRUE FALSE FALSE 18185.38751 17169.46086 17003.40687 16460.52445 16893.26744 17432.24397 18441.37415 17484.66272 16937.41649 17990.05408 1.010857857 0.954386284 0.945155962 0.914979154 0.939033722 0.968993417 1.0250872 0.97190718 0.941487803 1 14.1349119 -7.26111118 24.99879606 1.005127322 0.959687623 0 0.033595895 24.62847062 1875971.634 0.005029899 0.005944542 5.48E-08 7.26111118 -0.045439699 IDFYFDENPYFENK ddPTM_HeLa_CUDC101_4h_R1 2 IDFYFDENPYFENK 14 0 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 0 0 ; ; 254.18 7.43E-56 273890000 5712 5082.1 6067.5 4712.6 5367 5391.8 4795.3 5299.6 4816.8 4930.9 FALSE FALSE TRUE 5042.448019 5238.673477 6395.527403 4904.800198 4971.087103 5288.960398 4980.256327 5902.885042 4618.249465 4901.570788 1.028741242 1.06877442 1.304791399 1.000658852 1.014182457 1.079033768 1.016053127 1.204284361 0.942197852 1 12.25902844 -7.239604364 4.083239507 1.013078648 1.096051534 0.218514182 0.091375752 0.303336417 11.75086774 0.014834455 0.017774143 5.76E-08 7.239604364 0.082972886 PTGGGS(ph)SPPEIR ddPTM_HeLa_CUDC101_4h_R1 1 PTGGGSSPPEIR 12 0 Q13470-2;Q13470 Q13470-2 TNK1 Non-receptor tyrosine-protein kinase TNK1 1 0 PT(0.003)GGGS(0.82)S(0.177)PPEIR 79.886 0.035417 5621300 3577.4 2229.4 2593.3 2491.5 2378.8 2333.5 2486.2 1873.5 2353.9 2942.9 TRUE FALSE FALSE 3158.062595 2298.085172 2733.501642 2593.114139 2203.320663 2288.992375 2582.093567 2086.771667 2256.871246 2925.3955 1.079533552 0.785563925 0.934404132 0.886414893 0.753170183 0.782455697 0.882647685 0.713329759 0.771475599 1 11.51441597 -7.261043149 24.99993051 1.037557513 0.825117359 0.100946018 0.10678962 14.91067075 940782.7194 0.011447898 0.013569046 5.48E-08 7.261043149 -0.212440154 FTGVASGSTGST(ph)GSCSVGAK ddPTM_HeLa_CUDC101_4h_R1 1 FTGVASGSTGSTGSCSVGAK 20 0 B3KRP1;Q9UKI8-5;Q9UKI8;Q9UKI8-2;F8W7X8 B3KRP1 TLK1 Serine/threonine-protein kinase tousled-like 1 1 0 FTGVASGS(0.004)T(0.265)GS(0.158)T(0.346)GS(0.151)CS(0.077)VGAK 165.74 9.58E-13 0 1307.5 1621.4 1517.2 1818.6 1779.1 2052.4 1415.1 1113.2 1235.2 1190.2 TRUE FALSE FALSE 1154.236832 1671.353412 1599.224421 1892.770369 1647.859337 2013.25389 1469.680881 1239.922188 1184.284533 1183.120637 0.975586762 1.412665251 1.351700216 1.59981181 1.392807534 1.701647174 1.242207121 1.04800994 1.000983751 1 10.20838147 -7.260987909 24.93466136 0.988471521 1.405181586 0.542221072 0.168353762 20.56515625 1135814.214 0.028214732 0.033437568 5.48E-08 7.260987909 0.416710066 IDIDPEETVK ddPTM_HeLa_CUDC101_4h_R1 2 IDIDPEETVK 10 0 P54727;Q5W0S5 P54727 RAD23B UV excision repair protein RAD23 homolog B 0 0 ; ; 172.59 1.50E-06 15373600 5694.8 5004.6 4215.9 4284.2 4161 4357.5 3777.1 4193.8 4485.8 5510.4 FALSE FALSE TRUE 5027.264177 5158.785794 4443.824306 4458.928194 3854.05132 4274.387948 3922.784012 4671.20524 4300.893425 5477.623896 0.91778192 0.941792626 0.811268607 0.814025986 0.703599114 0.780336151 0.716147017 0.852779477 0.785175015 1 12.4193345 -6.778115677 0.927630277 0.97043498 0.758021616 0.341331614 0.074201667 0.164292616 0.282055037 0.00933354 0.014609981 1.67E-07 6.778115677 -0.212413364 IDILDSALLRPGR ddPTM_HeLa_CUDC101_4h_R1 2 IDILDSALLRPGR 13 1 P62195;P62195-2 P62195 PSMC5 26S protease regulatory subunit 8 0 0 ; ; 140.45 0.00092011 16857700 8254.1 7226.5 6431.4 6939.6 7214.9 7815.5 7520.7 7304.2 6999.7 7532.4 FALSE FALSE TRUE 7286.56691 7449.139899 6779.100938 7222.626884 6682.671201 7666.432359 7810.775918 8135.680603 6711.169403 7487.59695 0.973151594 0.9948639 0.905377384 0.964612135 0.892498788 1.02388422 1.043161908 1.086554292 0.896304842 1 12.87028706 -4.867801896 2.98306137 0.973825832 1.069006461 0.482882021 0.04454136 0.167772787 2.935932228 0.005567389 0.021068449 1.36E-05 4.867801896 0.095180629 ENVEYIEREES(ph)DGEYDEFGR ddPTM_HeLa_CUDC101_4h_R1 6 ENVEYIEREESDGEYDEFGR 20 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(0.997)DGEY(0.002)DEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEY(0.003)IEREES(0.992)DGEY(0.005)DEFGR;ENVEY(0.007)IEREES(0.967)DGEY(0.026)DEFGR;ENVEYIEREES(0.987)DGEY(0.013)DEFGR ;;;;; 119.41 1.44E-05 2941922000 6342.15 6734.53 6088.47 6116.62 7166.3 6493.74 6009.02 6509.64 6491.75 6366.44 TRUE FALSE FALSE 5598.732791 6942.012887 6417.631105 6366.082202 6637.656326 6369.882729 6240.789914 7250.671105 6224.157317 6328.572132 0.884675512 1.096931937 1.014072522 1.005927098 1.048839484 1.006527633 0.986129222 1.14570411 0.983501047 1 12.62766432 -7.260913492 24.99999974 0.945541214 1.037457383 0.35057868 0.053504876 39.84603877 1894253.976 0.009956871 0.011812682 5.48E-08 7.260913492 0.091916169 TLSDVEDQKELASPVS(ph)PELR ddPTM_HeLa_CUDC101_4h_R1 2 TLSDVEDQKELASPVSPELR 20 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 TLSDVEDQKELAS(0.002)PVS(0.998)PELR;TLSDVEDQKELAS(0.466)PVS(0.534)PELR ; 90.06 0.0010907 133316000 6108.6 3984 4543 4147.8 5713 5051 4615.1 3523.3 3979 4399.8 TRUE FALSE FALSE 5392.559168 4106.742318 4788.608322 4316.965212 5291.563372 4954.660591 4793.105953 3924.37823 3814.983936 4373.629794 1.232971107 0.938978037 1.094881951 0.987044038 1.209879121 1.132848646 1.095910303 0.897281758 0.872269514 1 12.09461539 -7.260911847 24.99945666 1.11001413 1.061193684 0 0.126739073 150.6052354 7137223.77 0.020147912 0.023898985 5.48E-08 7.260911847 -0.048820446 PLLS(ph)QEDSEEEENELEAINRK ddPTM_HeLa_CUDC101_4h_R1 1 PLLSQEDSEEEENELEAINRK 21 1 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 PLLS(0.931)QEDS(0.069)EEEENELEAINRK 107.69 1.79E-05 42784000 2318.5 1756.6 1478 1781.2 2002.6 1906 1842.3 1782 1700.2 2015.9 TRUE FALSE FALSE 2046.728945 1810.718764 1557.905151 1853.845035 1854.872188 1869.646226 1913.358128 1984.855677 1630.117036 2003.909337 1.021368036 0.903593157 0.777432952 0.925114226 0.9256268 0.932999408 0.954812722 0.990491755 0.813468457 1 10.96860152 -7.260880753 24.99249357 1.010090463 0.913315351 0 0.081119812 36.84305025 1648339.155 0.009229303 0.010941395 5.48E-08 7.260880753 -0.096775112 IDISPSTLR ddPTM_HeLa_CUDC101_4h_R1 1 IDISPSTLR 9 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 0 0 124.08 0.0014449 0 2547.2 2323.5 2247.2 2158.4 2302.7 2339.9 2161.2 2108.5 2660.6 2791.4 FALSE FALSE TRUE 2248.621077 2395.084281 2368.690429 2246.428881 2132.834409 2295.270306 2244.558208 2348.523117 2550.928942 2774.796629 0.810373292 0.863156693 0.853644698 0.809583253 0.768645308 0.827185056 0.808909087 0.846376665 0.919321047 1 11.43816632 -9.437102088 0.55203039 1.044012324 0.817057905 0.676778357 0.03574536 0.407004428 0.156424065 0.049853442 0.006438428 3.66E-10 9.437102088 -0.22695442 LPSS(ph)PASPSPK ddPTM_HeLa_CUDC101_4h_R1 2 LPSSPASPSPK 11 0 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0;Q9H4G0-4;H7C2K6;X6RC15 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 LPS(0.017)S(0.983)PASPSPK;LPS(0.001)S(0.999)PASPSPK ; 168.85 1.00E-06 35941000 8953.1 7544.3 6567.6 7813.8 6389.4 6666.1 7028.7 7650.1 7155.8 8434.1 TRUE FALSE FALSE 7903.63119 7776.730941 6922.664322 8132.480538 5918.066691 6538.955249 7299.799313 8520.956461 6860.834895 8383.933598 0.942711568 0.927575445 0.825706006 0.970007747 0.705881866 0.779938817 0.870689066 1.016343505 0.818331254 1 13.03341158 -7.260871842 0.879932036 0.98406819 0.851904703 0 0.098944532 0.481243869 0.748828351 0.019604223 0.023339062 5.48E-08 7.260871842 -0.132163487 VDHGAEIITQSPGRS(ph)S(ph)VAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 VDHGAEIITQSPGRSSVASPR 21 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77 MAP2 Microtubule-associated protein 2 3 0 VDHGAEIIT(0.192)QS(0.455)PGRS(0.872)S(0.587)VAS(0.893)PR 64.346 0.018031 14468000 1540.9 1705.8 1801.1 1572.6 1410.4 1905.2 1423.6 1451.7 2014.4 1584.8 TRUE FALSE FALSE 1360.278038 1758.353676 1898.472914 1636.737425 1306.357602 1868.861484 1478.508729 1616.95566 1931.365579 1575.373539 0.86346381 1.116150318 1.205093819 1.038951959 0.82923673 1.186297369 0.938513116 1.026395087 1.225973099 1 10.62147823 -7.260555353 24.99996929 0.935524577 1.046923391 0 0.142327358 107.0689381 3027885.839 0.019160772 0.022748358 5.49E-08 7.260555353 0.111398814 DTFEHDPSES(ph)IDEFNK ddPTM_HeLa_CUDC101_4h_R1 2 DTFEHDPSESIDEFNK 16 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 DTFEHDPS(0.052)ES(0.948)IDEFNK;DTFEHDPS(0.001)ES(0.999)IDEFNK ; 142.58 0.00018862 30521000 10929.7 7332.5 7121.8 7084.9 7733.1 8266.5 8171.2 6444.9 7824.1 9431.1 TRUE FALSE FALSE 9648.537134 7558.405634 7506.82605 7373.852846 7162.64462 8108.830285 8486.365921 7178.561365 7501.587286 9375.003398 1.029176921 0.806229642 0.800727822 0.786544018 0.764015149 0.864941584 0.905212037 0.765712935 0.800169021 1 13.1946035 -7.260355419 24.98781663 1.013777993 0.815445771 0.244741888 0.079258378 27.57904506 635761.8435 0.007247597 0.008613052 5.49E-08 7.260355419 -0.198332222 IDNDGDGFVTTEELK ddPTM_HeLa_CUDC101_4h_R1 2 IDNDGDGFVTTEELK 15 0 Q15293;Q15293-2 Q15293 RCN1 Reticulocalbin-1 0 0 ; ; 202.25 6.47E-16 17049600 2786.77 2772.7 2516.95 2171.2 2994.64 2871.1 2223.07 2425.66 2834.21 2943.6 FALSE FALSE TRUE 2460.109045 2858.123601 2653.02393 2259.750921 2773.731373 2816.338551 2308.814555 2701.78733 2717.382664 2926.091336 0.840749232 0.976771834 0.906678441 0.772276276 0.947930551 0.962491675 0.789043912 0.923343471 0.92867322 1 11.51475909 -9.477156903 1.126039637 1.00224096 0.885320314 0.122491995 0.069732124 0.525635755 1.1547039 0.049747669 0.011270993 3.33E-10 9.477156903 -0.116920646 IDQISMEEVDR ddPTM_HeLa_CUDC101_4h_R1 1 IDQISMEEVDR 11 0 A8MZF9;P55039 A8MZF9 DRG2 Developmentally-regulated GTP-binding protein 2 0 0 118.77 0.0011022 0 668.44 651.24 635.1 807.84 944.79 734.96 898.72 635.83 723.99 765.44 FALSE FALSE TRUE 590.0864765 671.3039325 669.4354271 840.787207 875.094724 720.9418625 933.3839315 708.2103171 694.1468258 760.8871288 0.775524324 0.882264803 0.879809109 1.105009107 1.150097946 0.947501719 1.22670485 0.930769217 0.912286198 1 9.571538648 -6.264712059 24.69754593 0.889271005 1.078030727 0.471605209 0.096237634 182.9077219 1380328.943 0.01671507 0.026198617 5.44E-07 6.264712059 0.188759722 IDRPEAISEER ddPTM_HeLa_CUDC101_4h_R1 2 IDRPEAISEER 11 1 D6RD69;Q9Y6B6;D6R9R5;Q9H029 D6RD69 SAR1B;DKFZp434B2017 GTP-binding protein SAR1b 0 0 ; ; 107.34 0.0096487 22579000 6576 6281 6148.1 6220.3 6969 5980.9 6091.1 6212.1 6081.1 7022.6 FALSE FALSE TRUE 5805.171249 6474.510165 6480.484883 6473.99072 6454.910754 5866.824297 6326.035767 6919.260354 5830.434484 6980.829263 0.831587628 0.927470064 0.928325939 0.927395654 0.924662459 0.840419394 0.906201187 0.991180287 0.835206573 1 12.76918271 -9.624952112 1.454702014 0.99975512 0.89812638 0 0.067361809 0.35192756 1.342838759 0.034298017 0.007920518 2.37E-10 9.624952112 -0.101628741 VHGS(ph)PLELKQDNGSIEINIK ddPTM_HeLa_CUDC101_4h_R1 1 VHGSPLELKQDNGSIEINIK 20 1 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 VHGS(0.832)PLELKQDNGS(0.168)IEINIK 58.427 0.015975 17166000 958.47 1265.6 1318.1 1226.7 1529.8 1414.6 987.04 662.95 1339.4 1002.7 TRUE FALSE FALSE 846.1195995 1304.591636 1389.360473 1276.730128 1416.949702 1387.618862 1025.110463 738.4175483 1284.189365 996.7358958 0.848890466 1.308863904 1.393910342 1.280911156 1.421589919 1.392163027 1.028467488 0.740835713 1.28839482 1 9.961067475 -7.26031814 24.9941495 0.928642718 1.239125642 0.043681674 0.228215908 88.76300104 1978671.37 0.035272874 0.04191949 5.49E-08 7.26031814 0.310482924 DEALQNISADDLPDS(ph)ASQAAHPQDSAFSYR ddPTM_HeLa_CUDC101_4h_R1 1 DEALQNISADDLPDSASQAAHPQDSAFSYR 30 0 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 DEALQNIS(0.081)ADDLPDS(0.83)AS(0.089)QAAHPQDSAFSYR 89.583 1.79E-07 22147000 1558 714.34 697.72 798.7 1187 1059.2 826.3 796.04 1220.2 1071.9 TRUE FALSE FALSE 1375.373602 736.3479687 735.4408537 831.2744383 1099.437375 1038.997525 858.1706678 886.6579759 1169.90284 1065.524291 1.290795164 0.691066337 0.690215005 0.780155314 1.031827603 0.975104494 0.805397563 0.832133048 1.097959802 1 10.05734777 -7.260301367 24.99993765 1.137319939 0.834630695 0.560836891 0.121603943 67.48127907 1482437.763 0.025770366 0.030623811 5.49E-08 7.260301367 -0.302689244 ELFQT(ph)PGTDKPTTDEK ddPTM_HeLa_CUDC101_4h_R1 1 ELFQTPGTDKPTTDEK 16 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(0.977)PGT(0.022)DKPT(0.001)TDEK 81.526 0.016736 28091000 3468.4 2809.5 3505.2 3152.8 2911.7 3654.3 2495.6 659.5 3006.2 4056.1 TRUE FALSE FALSE 3061.83941 2896.057365 3694.701715 3281.384812 2696.909692 3584.600316 2591.856128 734.5748142 2882.283164 4031.974137 0.759389645 0.718272803 0.916350549 0.813840739 0.668880702 0.88904348 0.642825584 0.182187382 0.714856561 1 11.97727067 -4.27907321 1.974092065 0.8551422 9.22E-13 0.752904798 0.105753566 0.278316377 1.170327561 0.017155532 0.424310194 5.26E-05 4.27907321 -0.8551422 down SIVPS(ph)SPQPQR ddPTM_HeLa_CUDC101_4h_R1 1 SIVPSSPQPQR 11 0 H7C5K2;H7C5C6;H7C5A5;A0A1X7SBY3;H0Y860;Q9P246-3;Q9P246;Q9P246-2 H7C5K2 STIM2 Stromal interaction molecule 2 1 0 SIVPS(0.593)S(0.407)PQPQR 111.94 0.00079855 0 3553.2 2548.2 2356.6 3037.6 2424.3 2500.6 2539.7 2502.9 2123.4 3135.8 TRUE FALSE FALSE 3136.699282 2626.707022 2484.004924 3161.486458 2245.464219 2452.905221 2637.65708 2787.820019 2035.872553 3117.148122 1.006272131 0.842663524 0.796883827 1.014224007 0.720358524 0.786906854 0.846176369 0.89434955 0.653120248 1 11.606011 -7.260243865 21.74647496 1.002961852 0.841124496 0 0.132179547 9.739074683 177150.9821 0.011660944 0.013853172 5.49E-08 7.260243865 -0.161837356 IDSWENAEDFLEK ddPTM_HeLa_CUDC101_4h_R1 1 IDSWENAEDFLEK 13 0 Q13823 Q13823 GNL2 Nucleolar GTP-binding protein 2 0 0 139.89 0.0042044 2398400 519.9 415.54 299.37 391.58 404.37 421.88 308.84 267.5 386.35 489.47 FALSE FALSE TRUE 458.9581101 428.3422949 315.5548477 407.550325 374.5404307 413.8333419 320.7520623 297.9511187 370.4244895 486.5586107 0.943274048 0.880350867 0.64854437 0.837618153 0.76977454 0.850531329 0.65922595 0.612364291 0.761315248 1 8.926469792 -3.448030911 0.156589232 1.080179369 0.115849232 0.213489424 0.109046568 12.17342173 0.249933627 0.192037167 2.435060951 0.000356426 3.448030911 -0.964330137 SCGTDSQSENEAS(ph)PVKRPR ddPTM_HeLa_CUDC101_4h_R1 1 SCGTDSQSENEASPVKRPR 19 2 H0Y398;C9JQ48;Q9H8U3 H0Y398 ZFAND3 AN1-type zinc finger protein 3 1 0 S(0.002)CGT(0.002)DS(0.003)QS(0.013)ENEAS(0.979)PVKRPR 59.252 0.029471 3157100 551.67 696.11 707.84 738.11 590.98 651.61 614.9 512.26 716.78 602.83 TRUE FALSE FALSE 487.0040789 717.556324 746.1079715 768.2133162 547.3845828 639.1816249 638.616899 570.5736078 687.234025 599.2443403 0.812697002 1.197435296 1.245081382 1.281970082 0.913458077 1.066646077 1.06570368 0.952155188 1.146834402 1 9.227000568 -7.260217956 24.99986489 0.911551362 1.10539264 0.056499364 0.139826667 98.68286524 2019818.505 0.022528095 0.026783588 5.49E-08 7.260217956 0.193841278 IDTIEIITDR ddPTM_HeLa_CUDC101_4h_R1 4 IDTIEIITDR 10 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;; ;;; 166.34 8.87E-05 127681400 10739.1 9056.4 8890 8221.9 9030.9 8404.7 8503.4 7771.4 9378.1 9921.2 FALSE FALSE TRUE 9480.278977 9335.41695 9370.620291 8557.22462 8364.708499 8244.394351 8831.378986 8656.064763 8991.530749 9862.188261 0.961275401 0.946586772 0.950156298 0.867680113 0.848159483 0.835959944 0.895478646 0.877702244 0.911717614 1 13.26769208 -6.522930695 1.252781203 0.982242865 0.861533025 0.64720272 0.030304921 0.120205451 0.376936902 0.004186125 0.007111571 3.00E-07 6.522930695 -0.12070984 IDVDAPDIDIHGPDAK ddPTM_HeLa_CUDC101_4h_R1 2 IDVDAPDIDIHGPDAK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 129.01 0.00045316 19839500 6302.1 5614.5 4844 4698.7 5628 5454.7 5626.2 6009.9 5998.9 5247.1 FALSE FALSE TRUE 5563.377391 5787.47609 5105.881292 4890.333296 5212.833653 5350.660686 5843.204419 6694.042723 5751.622803 5215.890016 1.066620917 1.10958553 0.978908926 0.937583668 0.999414028 1.02583848 1.120269868 1.283394148 1.102711672 1 12.34869773 -4.355087237 2.120704293 1.024420559 1.325641328 0.701511158 0.051194327 0.224116093 1.292572934 0.007255174 0.118463196 4.41E-05 4.355087237 0.301220769 APS(ph)APPGTGALPPAAPSGR ddPTM_HeLa_CUDC101_4h_R1 2 APSAPPGTGALPPAAPSGR 19 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 APS(0.999)APPGT(0.001)GALPPAAPSGR;APS(0.989)APPGT(0.011)GALPPAAPSGR ; 122.19 5.41E-05 82927000 1547.36 1003.04 1080.77 832.89 1104.37 1147.99 961.97 1026.9 1413.46 1333.56 TRUE FALSE FALSE 1365.980806 1033.942474 1139.199695 866.8588543 1022.902825 1126.094003 999.0735051 1143.798145 1355.196581 1325.627926 1.030440578 0.779964312 0.859366096 0.653923199 0.771636449 0.849479693 0.753660575 0.86283498 1.022305395 1 10.37246018 -7.260162805 24.96322328 1.01437472 0.787717761 0.758882403 0.05873488 36.76262809 718888.2975 0.009504442 0.011303517 5.49E-08 7.260162805 -0.226656959 VEMY(ph)S(ph)GSDDDDDFNKLPK ddPTM_HeLa_CUDC101_4h_R1 1 VEMYSGSDDDDDFNKLPK 18 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 2 0 VEMY(0.667)S(0.667)GS(0.667)DDDDDFNKLPK 53.169 0.033383 36894000 4204.8 3788.1 3578.2 3939.9 3852.9 4186.7 3833.3 3412.4 3978.9 3768.6 TRUE FALSE FALSE 3711.919718 3904.806871 3771.648315 4100.586152 3568.679243 4106.845673 3981.151665 3800.853823 3814.888058 3746.1842 0.990853498 1.042342464 1.006797348 1.094603451 0.952617131 1.096274357 1.062721813 1.014593416 1.01833969 1 11.87120612 -7.259957224 24.50268883 0.995680818 1.039340925 0.129928377 0.040741822 111.7641532 1847658.946 0.006154871 0.007322555 5.50E-08 7.259957224 0.043660107 IDVTAPDVSIEEPEGK ddPTM_HeLa_CUDC101_4h_R1 1 IDVTAPDVSIEEPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 202.32 6.25E-16 11656000 2622.1 2751.8 2103.8 1946.6 2035.4 2285.4 2079.9 2337.7 2503.2 2515.1 FALSE FALSE TRUE 2314.741413 2836.579696 2217.537792 2025.990762 1885.252597 2241.809803 2160.12244 2603.814319 2400.017036 2500.140073 0.925844691 1.134568309 0.886965421 0.810350901 0.754058789 0.896673681 0.864000567 1.041467375 0.959953029 1 11.28779321 -6.548111121 24.99983617 0.978343892 0.8655851 0.33076528 0.08681127 220.6827785 218648.123 0.013724542 0.019409811 2.83E-07 6.548111121 -0.112758792 ADREVQAEQPSSS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 2 ADREVQAEQPSSSSPR 16 1 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 ADREVQAEQPS(0.002)S(0.032)S(0.483)S(0.483)PR;ADREVQAEQPS(0.001)S(0.012)S(0.494)S(0.494)PR ; 89.353 0.0052192 21362900 2523.7 2528.3 2535.6 2378 3014.7 2162.9 2363.17 2357.8 2252.6 2405.5 TRUE FALSE FALSE 2227.875712 2606.193926 2672.682206 2474.985119 2792.311587 2121.646286 2454.318259 2626.202421 2159.746875 2391.191979 0.931700897 1.08991413 1.117719627 1.035042414 1.16774881 0.887275595 1.026399503 1.098281712 0.903209317 1 11.22351425 -7.259941867 24.99687216 0.967747646 1.057743513 0.322155365 0.074457017 141.0443398 2354353.905 0.012174878 0.014503801 5.50E-08 7.259941867 0.089995867 IEATQK(ac)LEQVK ddPTM_HeLa_CUDC101_4h_R1 1 IEATQKLEQVK 11 1 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 0 1 IEATQK(1)LEQVK 172.17 0.00023436 499130 292.04 185.23 148.92 258.31 97.852 253.44 337.07 344.52 180.24 169.61 FALSE TRUE FALSE 257.8075139 190.9367167 156.9710657 268.8449983 90.63365291 248.6060543 350.0709028 383.7387642 172.8104309 168.6011522 1.529096988 1.132475753 0.931020124 1.594562047 0.537562477 1.474521681 2.076325685 2.276015076 1.024965895 1 7.397470585 -4.800012156 3.448947352 1.201604656 2.21751343 0.66496258 0.295309364 0.109762611 2.647010382 0.042951863 0.163392514 1.58E-05 4.800012156 1.015908775 IECDDK(ac)GDGSCDVR ddPTM_HeLa_CUDC101_4h_R1 2 IECDDKGDGSCDVR 14 1 P21333-2;P21333;Q60FE5;A0A087WWY3;Q14315-2;Q14315 P21333-2;Q14315-2 FLNA;FLNC Filamin-A;Filamin-C 0 1 ; IECDDK(1)GDGSCDVR;IECDDK(1)GDGSCDVR 161.87 0.00010189 6162700 3254.32 1164.6 1055.67 1163.07 2586.31 2673.48 2765.42 2281.93 2105.94 382.86 FALSE TRUE FALSE 2872.853543 1200.479946 1112.742713 1210.505022 2395.523064 2622.487823 2872.083176 2541.695687 2019.132262 380.5827317 7.548565144 3.154320587 2.923786659 3.180661972 6.294355641 6.890716801 7.546540966 6.678431457 5.305370143 1 8.572066293 -9.488772564 1.156483587 0.926354188 5.647223346 0.026940444 2.164336801 0.383903124 0.895264659 1.490171148 0.340649859 3.25E-10 9.488772564 4.720869158 IECDDKGDGSCDVR ddPTM_HeLa_CUDC101_4h_R1 1 IECDDKGDGSCDVR 14 1 P21333-2;P21333;Q60FE5;A0A087WWY3;Q14315-2;Q14315 P21333-2;Q14315-2 FLNA;FLNC Filamin-A;Filamin-C 0 0 120.86 0.0017557 76781000 5324.3 3780.5 3281.5 3997 3144.5 3202.3 3387.1 3796.6 2890.7 381.77 FALSE FALSE TRUE 4700.193625 3896.972724 3458.907816 4160.014937 2912.5365 3141.221463 3517.741582 4228.789598 2771.544122 379.4992151 12.38525256 10.26872407 9.114400449 10.96185386 7.674683857 8.277280527 9.269430455 11.14307864 7.303161673 1 8.567953091 -9.374155319 1.038336718 0.873849762 9.95114986 0.412380625 2.300684705 0.167759576 0.316449078 1.140191073 0.278336033 4.23E-10 9.374155319 9.077300098 IECEIK(ac)INHEGEVNR ddPTM_HeLa_CUDC101_4h_R1 2 IECEIKINHEGEVNR 15 1 E9PC52;Q16576;Q16576-2;Q5JP01 E9PC52 RBBP7 Histone-binding protein RBBP7 0 1 ; IECEIK(1)INHEGEVNR;IECEIK(1)INHEGEVNR 155.56 0.00052133 18878200 5554.1 5157.6 4717.8 4751.5 5577.6 5713.9 5494.8 5866.6 5146.2 2060.47 FALSE TRUE FALSE 4903.056817 5316.499543 4972.858539 4945.286708 5166.15156 5604.916878 5706.736277 6534.43003 4934.071458 2048.214233 2.393820304 2.595675519 2.427899611 2.414438211 2.522271097 2.736489566 2.78620087 3.190305939 2.408962587 1 11.00015091 -9.573733664 0.279805249 4.61E-14 2.901269432 0.237377251 0.468542084 0.944812229 0.08590842 0.919495508 0.118303995 2.67E-10 9.573733664 2.901269432 IEDDMDGGDWSFCDGR ddPTM_HeLa_CUDC101_4h_R1 2 IEDDMDGGDWSFCDGR 16 0 C9JXX7;P23229-7;P23229-4;P23229-2;P23229-5;P23229-3;P23229-9;P23229-6;P23229 C9JXX7 ITGA6 Integrin alpha-6;Integrin alpha-6 heavy chain;Integrin alpha-6 light chain;Processed integrin alpha-6 0 0 ; ; 255.24 3.80E-56 7826100 2897.4 2187.1 1402.54 2542.5 2286.18 2121.09 1941.14 1986.94 1635.76 914.98 FALSE FALSE TRUE 2557.771164 2254.481959 1478.365555 2646.19414 2117.533056 2080.633742 2016.01042 2213.125218 1568.33328 909.5376583 2.812166314 2.478712056 1.625403348 2.909383812 2.328142257 2.287572948 2.21652221 2.433241986 1.724319236 1 9.828989562 -9.392910513 1.04770117 0.976926811 2.405076981 0.491173311 0.392485061 0.233108625 0.445873464 0.252201907 0.060430858 4.05E-10 9.392910513 1.42815017 IEDFLERR ddPTM_HeLa_CUDC101_4h_R1 2 IEDFLERR 8 1 P46781;B5MCT8;C9JM19 P46781 RPS9 40S ribosomal protein S9 0 0 ; ; 154.12 0.00042442 12353000 10064.3 12958 13194.9 12295.4 20247.8 15152.2 14640.2 17963.5 14527.2 6409 FALSE FALSE TRUE 8884.57801 13357.22062 13908.25621 12796.85956 18754.16013 14863.19703 15204.87742 20008.39223 13928.38267 6370.878983 1.394560787 2.096605611 2.183098477 2.008648978 2.943731969 2.332990011 2.386621604 3.140601522 2.186257611 1 12.63727672 -6.9210941 0.53093715 1.024731999 2.761692154 0.431304269 0.453489026 0.20726284 0.129239602 0.085648988 0.134977263 1.20E-07 6.9210941 1.736960154 IEDGEDLKHDFER ddPTM_HeLa_CUDC101_4h_R1 1 IEDGEDLKHDFER 13 1 M0R0P8;Q13459-2;Q13459;M0R300 M0R0P8 MYO9B Unconventional myosin-IXb 0 0 113.77 0.0020538 3995300 2774.9 2466.7 2661.1 2172.5 2942.3 2651.2 2576.4 2490.8 2751.6 2482.8 FALSE FALSE TRUE 2449.630428 2542.696103 2804.967115 2261.10394 2725.252391 2600.632777 2675.772611 2774.342604 2638.177883 2468.032195 0.992543952 1.030252404 1.136519662 0.916156582 1.104220762 1.05372725 1.08417249 1.124111188 1.068939817 1 11.2691455 -1 0.236011824 0.989729848 1.766037822 0.128847267 0.060165088 38.40691359 0.471250102 0.032358064 11.74161207 0.1 1 0.776307975 IEDGNDFGVAIQEK ddPTM_HeLa_CUDC101_4h_R1 1 IEDGNDFGVAIQEK 14 0 H0YM70;A0A087X1Z3;Q9UL46;H0YKU2 H0YM70 PSME2 Proteasome activator complex subunit 2 0 0 105.65 0.0028554 0 862.14 856.68 785.21 830.41 1287.3 1190.6 873.93 765.85 1232.4 1336 FALSE FALSE TRUE 761.0812561 883.0732954 827.6608277 864.2777091 1192.338444 1167.891289 907.6377728 853.0312683 1181.59995 1328.053413 0.573080306 0.664938087 0.623213509 0.650785353 0.897809103 0.879400842 0.68343469 0.642316988 0.889723214 1 10.37509746 -9.463060288 1.202817279 0.999791576 0.694723901 0.450325942 0.105136049 0.316560758 0.820174664 0.079459365 0.019680071 3.44E-10 9.463060288 -0.305067675 LAPLGPLNPS(ph)YKSSPTR ddPTM_HeLa_CUDC101_4h_R1 1 LAPLGPLNPSYKSSPTR 17 1 Q96T17;Q96T17-2 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 LAPLGPLNPS(0.413)Y(0.249)KS(0.174)S(0.126)PT(0.039)R 58.01 0.031524 13337000 592.82 1150.3 743.68 1055.2 1274.3 579.58 925.85 1307.7 899.16 883.49 TRUE FALSE FALSE 523.3305383 1185.73938 783.8855903 1098.235617 1180.297428 568.5254771 961.5603446 1456.563282 862.0962442 878.2349622 0.595888983 1.350139121 0.892569328 1.250503185 1.343942656 0.647350085 1.094878234 1.658512067 0.98162369 1 9.778463159 -7.259937733 24.99937426 0.809169799 1.151651056 0.204196929 0.279171034 147.7611691 2459929.7 0.048326041 0.057522391 5.50E-08 7.259937733 0.342481258 IEDSGENLETEPLESQDR ddPTM_HeLa_CUDC101_4h_R1 1 IEDSGENLETEPLESQDR 18 0 P78345 P78345 RPP38 Ribonuclease P protein subunit p38 0 0 132.23 6.94E-05 0 408.51 333.27 432.41 380.06 464.52 477.82 316.2 298.26 446.03 548.01 FALSE FALSE TRUE 360.6250771 343.5376537 455.7873926 395.5604896 430.2532851 468.7063796 328.3959399 332.2127128 427.6444546 544.7504121 0.662000558 0.630633123 0.836690312 0.726131602 0.789817273 0.860405737 0.602837433 0.609843894 0.785028235 1 9.089451573 -9.308761751 0.950526992 1.006132278 0.716984022 0.213379756 0.108217759 0.338614951 0.529959978 0.068954343 0.016928569 4.91E-10 9.308761751 -0.289148256 SDS(ph)PEIPFQAAAGPSDGLDASS(ph)PGNSFVGLR ddPTM_HeLa_CUDC101_4h_R1 2 SDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 31 0 Q12888;Q12888-3;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 S(0.205)DS(0.795)PEIPFQAAAGPSDGLDAS(0.103)S(0.734)PGNS(0.163)FVGLR;S(0.149)DS(0.851)PEIPFQAAAGPSDGLDAS(0.275)S(0.714)PGNS(0.011)FVGLR ; 173.54 1.45E-18 10619300 3983.1 3203.79 3045.86 2985.17 3390.4 3417.95 3378.1 3174.58 4136.5 3527.3 TRUE FALSE FALSE 3516.207056 3302.494972 3210.528405 3106.918136 3140.296947 3352.758298 3508.394449 3535.961355 3965.991719 3506.319463 1.002819935 0.94186939 0.915640585 0.886091005 0.89561062 0.956204457 1.000591785 1.008453848 1.131098225 1 11.77574173 -7.259903427 21.52262268 1.001331639 0.941058588 0.338599991 0.055581256 17.80164874 249440.5007 0.006987735 0.008311307 5.50E-08 7.259903427 -0.060273051 S(ph)SPSVLIHSLGK ddPTM_HeLa_CUDC101_4h_R1 1 SSPSVLIHSLGK 12 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3 RAI14 Ankycorbin 1 0 S(0.5)S(0.5)PSVLIHSLGK 119.17 0.0022579 19381000 4439.5 3180.2 2593.1 2497.9 4056.1 3557.4 3816.6 3181.9 3190.4 3795.4 TRUE FALSE FALSE 3919.10854 3278.178193 2733.29083 2599.775159 3756.889584 3489.548522 3963.80754 3544.114634 3058.890362 3772.824792 1.038773003 0.868892242 0.724468 0.689079218 0.995776319 0.924916664 1.050620625 0.939379597 0.810769259 1 11.88142939 -7.259850368 24.75459997 1.018309475 0.883240721 0 0.123494548 136.7022254 2129636.142 0.019187304 0.02283921 5.50E-08 7.259850368 -0.135068753 ELAVT(ph)LQGPEDNT(ph)LLFESR ddPTM_HeLa_CUDC101_4h_R1 1 ELAVTLQGPEDNTLLFESR 19 0 E9PR59;F6U0I4;H9KV53;Q5U5Z8 E9PR59 AGBL2 Cytosolic carboxypeptidase 2 2 0 ELAVT(1)LQGPEDNT(0.6)LLFES(0.4)R 52.019 0.039122 4125800 2569.9 2780.6 2520.5 2714.7 3206.4 2715 2851.6 2157.8 3048.1 2495 TRUE FALSE FALSE 2268.660218 2866.26699 2656.765854 2825.4172 2969.87026 2663.215898 2961.587167 2403.43523 2922.456028 2480.159629 0.914723468 1.155678432 1.071207604 1.139207802 1.197451255 1.073808261 1.194111513 0.969064733 1.178333843 1 11.27621726 -7.259753931 24.99985433 0.959730526 1.118360588 0 0.095787793 80.7747693 1198114.056 0.010873951 0.012956752 5.50E-08 7.259753931 0.158630062 VKAQT(ph)PPGPSLSGSK ddPTM_HeLa_CUDC101_4h_R1 2 VKAQTPPGPSLSGSK 15 1 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VKAQT(0.999)PPGPS(0.001)LSGSK;VKAQT(0.963)PPGPS(0.034)LS(0.001)GS(0.002)K ; 76.329 0.032063 628290000 11380.7 11692.3 11483 11831.5 12746 10435.9 10581.4 12809.4 13376.4 10595.1 TRUE FALSE FALSE 10046.6716 12052.5259 12103.80571 12314.03971 11805.75297 10236.85259 10989.52814 14267.57032 12825.01913 10532.07987 0.953911451 1.144363321 1.149232237 1.169193536 1.120932723 0.971968758 1.043433802 1.354677375 1.217710014 1 13.36250275 -7.259688967 24.96639004 0.978235962 1.127544861 0 0.119921845 122.9793366 1754074.029 0.015420525 0.018364745 5.50E-08 7.259688967 0.149308899 EMRRTAS(ph)EQINCT(ph)QTSMEVS(ph)DLR ddPTM_HeLa_CUDC101_4h_R1 1 EMRRTASEQINCTQTSMEVSDLR 23 2 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 3 0 EMRRT(0.465)AS(0.533)EQINCT(0.647)QT(0.193)S(0.192)MEVS(0.97)DLR 45.527 0.0029753 0 82.904 0 0 0 0 0 0 0 0 66.067 TRUE FALSE FALSE 73.18611879 0 0 0 0 0 0 0 0 65.67403055 1.114384456 0 0 0 0 0 0 0 0 1 6.037251094 -7.259447073 24.99813515 1.054014894 2.76E-08 0.377359368 0.334291717 9.111335803 114323.1511 0.006971518 0.008312588 5.50E-08 7.259447073 -1.054014867 IEDVGSDEEDDSGKDK ddPTM_HeLa_CUDC101_4h_R1 2 IEDVGSDEEDDSGKDK 16 1 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 0 0 ; ; 161.49 6.54E-05 45998000 4970.3 3845.4 3790.5 3788 3734.1 3854 3721.3 4502.4 4837.8 4420 FALSE FALSE TRUE 4387.688968 3963.872216 3995.425896 3942.491013 3458.642882 3780.491371 3864.831788 5014.935017 4638.383836 4393.709643 0.998629706 0.902169815 0.909351373 0.897303494 0.787180575 0.860432682 0.879628401 1.141389719 1.055687383 1 12.10122382 -7.262432056 10.11297854 0.999365814 0.902532505 0.228636474 0.087122205 0.109734106 323.9673758 0.013975637 0.016505738 5.46E-08 7.262432056 -0.096833309 IEDVPPPTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 IEDVPPPTKK 10 1 Q6ZW49-2;Q6ZW49-1;Q6ZW49 Q6ZW49-2 PAXIP1 PAX-interacting protein 1 0 1 ; IEDVPPPTK(1)K;IEDVPPPTK(1)K 101.66 0.010059 1760430 2775 2721 2493.9 2667.1 2475.6 2658.3 2732.5 2774.4 2999.1 3197.8 FALSE TRUE FALSE 2449.718707 2804.830785 2628.727778 2775.875866 2292.97992 2607.597357 2837.89344 3090.226481 2875.475829 3178.779343 0.770647611 0.882360957 0.826961388 0.873252141 0.721339757 0.82031405 0.892762011 0.972142495 0.904584911 1 11.63425716 -9.469842234 1.176195421 1.001071016 0.835866879 0.221954935 0.071319753 0.360724869 0.883464762 0.048831934 0.011701347 3.39E-10 9.469842234 -0.165204137 LSMEDSKS(ph)PPPKATEEK ddPTM_HeLa_CUDC101_4h_R1 1 LSMEDSKSPPPKATEEK 17 2 Q9NQG5 Q9NQG5 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B 1 0 LS(0.008)MEDS(0.042)KS(0.951)PPPKATEEK 55.011 0.026886 141830000 2802.2 3300.8 3390.6 3285 3701.1 3225.1 2951.7 3148.4 3495.1 2660.2 TRUE FALSE FALSE 2473.730364 3402.493736 3573.906092 3418.976499 3428.077227 3163.586591 3065.548058 3506.80113 3351.030499 2644.377012 0.935468109 1.286690105 1.351511557 1.292923242 1.296364781 1.196344763 1.159270423 1.326135083 1.267228721 1 11.36871216 -7.259411423 24.99957188 0.969526604 1.270159031 0.332155318 0.109402823 48.26394219 594972.694 0.010288612 0.012268923 5.50E-08 7.259411423 0.300632427 SAGGGAGPGGAAGGGVGGGDEPGS(ph)PAQGKR ddPTM_HeLa_CUDC101_4h_R1 1 SAGGGAGPGGAAGGGVGGGDEPGSPAQGKR 30 1 Q15672 Q15672 TWIST1 Twist-related protein 1 1 0 SAGGGAGPGGAAGGGVGGGDEPGS(1)PAQGKR 128.59 1.30E-15 0 1205.1 1386.2 1367.5 1398.8 1535.2 1442.1 1286.4 1086.3 1035 1171.9 TRUE FALSE FALSE 1063.840005 1428.907179 1441.431186 1455.84911 1421.951355 1414.594345 1336.016879 1209.960001 992.3368619 1164.929487 0.91322266 1.226604009 1.237354881 1.24973153 1.220632983 1.214317571 1.14686502 1.038655142 0.851842857 1 10.18602692 -7.259339437 24.99965368 0.95902181 1.195053289 0.751262222 0.069890356 70.19133938 835623.3804 0.011386655 0.013575478 5.50E-08 7.259339437 0.236031479 GS(ph)YGDLGGPIITTQVTIPK ddPTM_HeLa_CUDC101_4h_R1 2 GSYGDLGGPIITTQVTIPK 19 0 P61978;P61978-2;P61978-3;Q5T6W2;S4R359 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 GS(1)YGDLGGPIITTQVTIPK;GS(1)YGDLGGPIITTQVTIPK ; 276.4 8.27E-87 273720000 9755.1 7275.2 6138.3 7008 7558.6 8258.4 7766.9 4620.1 7569.9 9132.3 TRUE FALSE FALSE 8611.621966 7499.340289 6470.155065 7293.816531 7001.017137 8100.884779 8066.471935 5146.033509 7257.865518 9077.980673 0.948627484 0.826102253 0.71273065 0.803462443 0.771208641 0.892366383 0.888575579 0.566869846 0.7995022 1 13.1481557 -7.259322633 2.69671193 0.978642032 0.783417081 0.212718154 0.104069846 0.160718892 2.26351952 0.014906164 0.017673094 5.50E-08 7.259322633 -0.195224951 IEDVTPIPSDSTRR ddPTM_HeLa_CUDC101_4h_R1 2 IEDVTPIPSDSTRR 14 1 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 0 0 ; ; 104.41 0.0055838 31556000 6075.9 5751.2 5964.9 5556.3 6457.2 6258.1 5885.3 6455.2 5590.3 5569 FALSE FALSE TRUE 5363.692212 5928.387655 6287.380537 5782.90993 5980.865221 6138.737169 6112.297992 7190.033875 5359.865468 5535.87534 0.968896856 1.070903388 1.135751828 1.044624305 1.08038293 1.108900904 1.104124934 1.298807042 0.968205593 1 12.43459574 -1 0.286106976 0.982736269 3.089849971 0.730223324 0.047869621 18.67544881 0.238468744 0.021129062 20.08759505 0.1 1 2.107113701 S(ph)PQSDPADT(ph)PTNTK ddPTM_HeLa_CUDC101_4h_R1 1 SPQSDPADTPTNTK 14 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 2 0 S(1)PQSDPADT(0.928)PT(0.072)NTK 137.52 0.0022258 8485000 1328.7 920.58 991 1062.6 873.09 1234.2 898.27 241.4 1044.9 966.24 TRUE FALSE FALSE 1172.9518 948.9419786 1044.576458 1105.937421 808.6838901 1210.659691 932.9165748 268.8800002 1001.82878 960.4927615 1.221197959 0.987974107 1.087542249 1.151427127 0.841946887 1.260456861 0.971289542 0.279939642 1.043036262 1 9.907630931 -4.276144124 3.700330496 1.090766406 0.204585106 0.80665975 0.115604762 0.078676658 2.009168654 0.016457842 0.186446631 5.29E-05 4.276144124 -0.8861813 down EELMSS(ph)DLEETAGSTSIPK ddPTM_HeLa_CUDC101_4h_R1 6 EELMSSDLEETAGSTSIPK 19 0 O00567 O00567 NOP56 Nucleolar protein 56 1 0 EELMS(0.013)S(0.987)DLEETAGSTSIPK;EELMS(0.045)S(0.955)DLEETAGSTSIPK;EELMS(0.03)S(0.97)DLEETAGSTSIPK;EELMS(0.005)S(0.995)DLEETAGSTSIPK;EELMS(0.144)S(0.843)DLEET(0.013)AGSTSIPK;EELMS(0.021)S(0.979)DLEETAGSTSIPK ;;;;; 302.62 4.86E-124 380483000 49456.6 34775.6 35943.8 35889.8 32589 39867.7 34699.7 29273.9 36622.3 43496.9 TRUE FALSE FALSE 43659.37232 35846.99502 37887.03055 37353.54117 30184.9744 39107.29005 36038.07905 32606.32245 35112.71329 43238.1785 1.009741248 0.829058861 0.876240209 0.863901822 0.698109297 0.904462015 0.833478197 0.754109529 0.812076607 1 15.40001813 -7.25930916 20.52949368 1.004600062 0.825164215 0.196623986 0.082937558 6.133498576 59108.40266 0.009019384 0.010744641 5.50E-08 7.25930916 -0.179435847 KRS(ph)PTESVNTPVGK ddPTM_HeLa_CUDC101_4h_R1 1 KRSPTESVNTPVGK 14 2 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 KRS(0.998)PT(0.001)ES(0.001)VNTPVGK 81.904 0.019392 28069000 6550.1 4756.7 4641.4 4943.2 4962.3 5328.5 4936.5 4400.7 5194 5595.8 TRUE FALSE FALSE 5782.307207 4903.248289 4892.328123 5144.805062 4596.241015 5226.86774 5126.902459 4901.6579 4979.901122 5562.515933 1.039512925 0.881480314 0.879517143 0.924906126 0.826288153 0.939658925 0.92168769 0.881194402 0.895260559 1 12.44152185 -7.259236364 24.99694669 1.018658882 0.894471393 0.289717015 0.049936697 64.97677166 737272.6174 0.005305859 0.006336459 5.51E-08 7.259236364 -0.124187489 FDGSENRPFS(ph)PSPLNNISSTVTVK ddPTM_HeLa_CUDC101_4h_R1 2 FDGSENRPFSPSPLNNISSTVTVK 24 1 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 FDGS(0.005)ENRPFS(0.973)PS(0.022)PLNNISSTVTVK;FDGS(0.264)ENRPFS(0.626)PS(0.04)PLNNIS(0.052)S(0.016)T(0.001)VTVK ; 72.514 0.0003527 82236000 6195.3 3769.2 3540.7 3469.4 4052 4115.4 4472.3 3800.7 4470 5157.2 TRUE FALSE FALSE 5469.096325 3885.324584 3732.120952 3610.897128 3753.092033 4036.905602 4644.798109 4233.356325 4285.744708 5126.524745 1.066823355 0.757886634 0.728002134 0.70435574 0.732092835 0.787454621 0.906032515 0.825775069 0.835994152 1 12.32376544 -7.25913647 24.99758236 1.031555475 0.77625909 0.477627947 0.083480031 68.01772107 738317.912 0.01091357 0.013030818 5.51E-08 7.25913647 -0.255296386 QIS(ph)QDVK ddPTM_HeLa_CUDC101_4h_R1 1 QISQDVK 7 0 E9PIJ1;A0A590UK85;A0A590UJY6;A0A5F9UK94;H0Y360;Q01433-3;Q01433-5;Q01433-2;Q01433-4;Q01433;E9PJF6 E9PIJ1 AMPD2 AMP deaminase 2 1 0 QIS(1)QDVK 97.472 0.024835 71218000 9225.3 5128.2 5242.7 6076.1 5434.6 4992.4 5941.5 5988.8 6334.8 7195.2 TRUE FALSE FALSE 8143.924319 5286.193764 5526.13622 6323.909621 5033.700385 4897.178288 6170.665645 6670.540784 6073.676863 7152.40263 1.138627779 0.739079445 0.772626557 0.884165776 0.703777548 0.684689962 0.862740252 0.932629374 0.849179944 1 12.80421224 -7.259114445 24.99082938 1.065463119 0.794120259 0.379264059 0.105852189 89.40685628 961039.5878 0.015241707 0.018195846 5.51E-08 7.259114445 -0.27134286 IEEEEQEPEPPEPFEYIDD ddPTM_HeLa_CUDC101_4h_R1 3 IEEEEQEPEPPEPFEYIDD 19 0 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 0 ;; ;; 162.31 6.99E-05 141295000 24506.7 19882.9 18579.6 18273.2 22963.5 21203.6 19637.7 19596.4 21665.1 20670.4 FALSE FALSE TRUE 21634.06178 20495.46858 19584.06938 19018.46008 21269.52835 20799.17666 20395.13267 21827.17496 20772.05541 20547.45154 1.052882969 0.997470102 0.953114275 0.925587294 1.035141916 1.012250917 0.99258697 1.06228137 1.010930984 1 14.32667185 -10.13841303 3.239897534 0.999562203 1.014155267 0 0.040848558 1.448200793 27.92728822 0.041363551 0.006526408 7.27E-11 10.13841303 0.014593064 IEEELGSK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 2 IEEELGSKAK 10 1 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 1 ; IEEELGSK(1)AK;IEEELGSK(1)AK 198.72 4.62E-08 3601600 2373.3 2067.89 2352.2 2269.9 2619 2184.32 2400.2 2622.5 2112.7 2721.1 FALSE TRUE FALSE 2095.105372 2131.59924 2479.367047 2362.476333 2425.801588 2142.657735 2492.776518 2921.034799 2025.613612 2704.914776 0.77455504 0.788046728 0.916615588 0.873401393 0.896812576 0.792135026 0.921573034 1.079899014 0.748864116 1 11.40136742 -4.303964379 3.722847932 0.878371391 1.093189657 0.412372534 0.077510362 0.222066912 5.574360631 0.012663734 0.120661571 4.97E-05 4.303964379 0.214818266 TPS(ph)PPPPIPEDIALGKK ddPTM_HeLa_CUDC101_4h_R1 2 TPSPPPPIPEDIALGKK 17 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 T(0.108)PS(0.892)PPPPIPEDIALGKK;T(0.149)PS(0.851)PPPPIPEDIALGKK ; 101.49 0.0014943 51488000 2558.8 3061.7 2798.1 2537.5 3696.9 2782.7 2852.5 3323.1 3070.9 2550.5 TRUE FALSE FALSE 2258.861343 3156.027348 2949.37375 2640.990218 3424.187052 2729.624634 2962.521881 3701.388272 2944.316202 2535.329513 0.890953752 1.244819394 1.163309832 1.041675334 1.350588567 1.076635057 1.168495797 1.459923948 1.161315004 1 11.30795755 -7.259096216 24.99399294 0.948505937 1.204501865 0.265543399 0.136130266 122.5037953 1306722.516 0.019376781 0.023130547 5.51E-08 7.259096216 0.255995928 ADVTPPPDGSTTHNLEVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 ADVTPPPDGSTTHNLEVSPK 20 0 O75362 O75362 ZNF217 Zinc finger protein 217 1 0 ADVTPPPDGST(0.001)T(0.003)HNLEVS(0.996)PK;ADVTPPPDGS(0.004)T(0.004)T(0.059)HNLEVS(0.932)PK ; 114.15 5.72E-05 16213500 4109.4 2587.8 2135.76 2126.38 3217.1 3057.3 2860.2 3090.5 3038.9 3365.6 TRUE FALSE FALSE 3627.702361 2667.527051 2251.225646 2213.102967 2979.780942 2998.987096 2970.518872 3442.310028 2913.635256 3345.581262 1.084326483 0.797328429 0.672895222 0.661500288 0.890661655 0.896402407 0.887893206 1.028912395 0.870890595 1 11.70804117 -7.259078154 24.80049185 1.039820841 0.827543595 0.220588695 0.117226379 131.1340453 1377332.592 0.019154044 0.022862368 5.51E-08 7.259078154 -0.212277246 GLLSNHTGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 GLLSNHTGSPR 11 0 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 GLLSNHT(0.078)GS(0.922)PR;GLLSNHT(0.012)GS(0.988)PR;GLLSNHT(0.087)GS(0.913)PR ;; 106.79 0.0079163 32623200 13079.9 10666.02 9846.23 9979.9 11837.2 11696.66 11923.65 9002.8 12300.2 11627.4 TRUE FALSE FALSE 11546.69395 10994.62743 10378.54698 10386.92346 10963.99334 11473.5657 12383.54917 10027.64236 11793.18055 11558.23971 0.99900108 0.951237188 0.897934914 0.898659633 0.948586776 0.992674143 1.071404426 0.86757522 1.020326697 1 13.49663408 -7.259013695 7.329479781 0.999561295 0.949699134 0.199485153 0.053964269 0.18534301 78.02637691 0.009091722 0.010784051 5.51E-08 7.259013695 -0.049862161 SRS(ph)PLELEPEAK ddPTM_HeLa_CUDC101_4h_R1 3 SRSPLELEPEAK 12 1 A0A087WTQ7;A0A087WV56;A0A087WW71;A0A087X0X5;Q92466-3;Q92466-2;Q92466-5;Q92466-4;Q92466 A0A087WTQ7 DDB2 DNA damage-binding protein 2 1 0 S(0.028)RS(0.972)PLELEPEAK;S(0.002)RS(0.998)PLELEPEAK;S(0.007)RS(0.993)PLELEPEAK ;; 152.34 0.0002553 1493902200 26838.6 21820.7 22815.8 20673.5 22445.7 22514.8 21331.2 20465 22047.9 24943.3 TRUE FALSE FALSE 23692.61999 22492.9699 24049.29116 21516.65469 20789.92543 22085.3677 22153.95153 22794.65288 21139.07623 24794.93614 0.955542691 0.907159824 0.96992753 0.867784235 0.838474651 0.890720895 0.893486936 0.919326944 0.852556188 1 14.59775789 -7.258955331 0.634533869 0.991708397 0.882655115 0 0.053085276 0.29405223 0.257599058 0.009279965 0.011056265 5.51E-08 7.258955331 -0.109053282 IEGEMQVPDVDIR ddPTM_HeLa_CUDC101_4h_R1 4 IEGEMQVPDVDIR 13 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ;;; ;;; 211.37 3.99E-23 47282000 6664.16 5484.38 5067.57 5056.74 6132.5 5885.09 5905.55 6662.3 6087.97 6105.38 FALSE FALSE TRUE 5882.997267 5653.347247 5341.538163 5262.975714 5680.117693 5772.841713 6133.329042 7420.709302 5837.0213 6069.064928 0.969341626 0.931502186 0.880125394 0.867180657 0.935913153 0.951191293 1.0105888 1.222710482 0.961766165 1 12.56725854 -4.263172034 2.738813779 0.960133851 1.272447062 0.792427861 0.04274725 0.19733436 1.978306356 0.007560713 0.138334907 5.46E-05 4.263172034 0.312313211 IEGPLGQGGPR ddPTM_HeLa_CUDC101_4h_R1 1 IEGPLGQGGPR 11 0 O94913 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 0 0 75.652 0.033546 593920 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 SDLNGLPS(ph)PVEER ddPTM_HeLa_CUDC101_4h_R1 3 SDLNGLPSPVEER 13 0 E7EWN3;Q9C0A6 E7EWN3 SETD5 SET domain-containing protein 5 1 0 SDLNGLPS(1)PVEER;S(0.001)DLNGLPS(0.999)PVEER;S(0.065)DLNGLPS(0.935)PVEER ;; 121.32 0.002082 29488900 5547.5 5235.1 5064.8 4915.6 5538.9 5543.9 5323.6 4748.3 5601.5 5120.5 TRUE FALSE FALSE 4897.230459 5396.387226 5338.618408 5116.079415 5130.306382 5438.159344 5528.933035 5288.827279 5370.603799 5090.043038 0.962119656 1.06018499 1.048835613 1.005115158 1.007910217 1.068391623 1.086225204 1.039053548 1.055119526 1 12.31346214 -7.258904458 24.99955804 0.98211206 1.04475488 0.120124119 0.033976951 129.1431039 1273611.965 0.004809204 0.005748706 5.51E-08 7.258904458 0.062642821 IEHSFWR ddPTM_HeLa_CUDC101_4h_R1 3 IEHSFWR 7 0 Q16531-2;Q16531 Q16531-2 DDB1 DNA damage-binding protein 1 0 0 ;; ;; 177.71 1.91E-08 7076800 24519 14560.4 8669.9 14383.3 14345.7 13913.2 11602.8 11244.1 9237 4734.6 FALSE FALSE TRUE 21644.91999 15008.98867 9138.621019 14969.91314 13287.44629 13647.82889 12050.32388 12524.08289 8856.24695 4706.438389 4.599002091 3.189033283 1.941727537 3.180730716 2.823248749 2.899821003 2.560391295 2.661053191 1.881730136 1 12.20041999 IEIESFYEGEDFSETLTR ddPTM_HeLa_CUDC101_4h_R1 2 IEIESFYEGEDFSETLTR 18 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ; ; 253.16 6.14E-56 30423000 3361.1 2853 2814.8 3140.7 3659.1 3031.2 2805.3 3157.6 2819.2 3034 FALSE FALSE TRUE 2967.116953 2940.897548 2966.976602 3268.791321 3389.175483 2973.38491 2913.501361 3517.048421 2702.991383 3015.953633 0.983807218 0.975113648 0.983760682 1.083833414 1.1237492 0.985885485 0.966029891 1.166148041 0.89623108 1 11.55839853 -6.271626055 24.44590946 0.990006056 1.058477926 0.3470808 0.062853191 519.4646017 1246607.663 0.008263767 0.012714072 5.35E-07 6.271626055 0.06847187 IENHEGVR ddPTM_HeLa_CUDC101_4h_R1 2 IENHEGVR 8 0 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 128.38 0.0054347 14155200 6283.3 1496.46 8156.1 7331.6 2958.62 3135.2 3767.8 1552.69 6979.2 11436.8 FALSE FALSE TRUE 5546.781099 1542.564159 8597.043437 7630.614338 2740.368497 3075.401284 3913.125308 1729.441953 6691.514422 11368.7734 0.487896179 0.135684309 0.756197976 0.671190644 0.241043462 0.270513025 0.344199428 0.152122124 0.588587193 1 13.47278899 -13.52287875 0.13603461 3.252362423 0.120862817 0.316484426 0.224634092 36.23082631 0.345550368 21.8484615 0.604262041 3.00E-14 13.52287875 -3.131499606 REESPMDVDQPS(ph)PSAQDTQSIASDGTPQGEK ddPTM_HeLa_CUDC101_4h_R1 6 REESPMDVDQPSPSAQDTQSIASDGTPQGEK 31 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 REESPMDVDQPS(0.357)PS(0.357)AQDT(0.202)QS(0.076)IAS(0.006)DGT(0.001)PQGEK;REESPMDVDQPS(0.682)PS(0.281)AQDT(0.036)QS(0.001)IASDGTPQGEK;REESPMDVDQPS(0.802)PS(0.191)AQDT(0.007)QSIASDGTPQGEK;REES(0.001)PMDVDQPS(0.499)PS(0.499)AQDTQSIASDGTPQGEK;REES(0.075)PMDVDQPS(0.461)PS(0.461)AQDT(0.002)QSIASDGTPQGEK;REES(0.007)PMDVDQPS(0.625)PS(0.215)AQDT(0.129)QS(0.022)IAS(0.001)DGTPQGEK ;;;;; 116.65 8.73E-12 104860400 10877.84 7423.45 7848.13 7410.66 8803.4 8669.8 8013.46 7560.37 8801.77 8569.29 TRUE FALSE FALSE 9602.756085 7652.157696 8272.423647 7712.898746 8153.990721 8504.43801 8322.541837 8421.011961 8438.957315 8518.319482 1.127306402 0.898317762 0.971133293 0.9054484 0.957229972 0.998370398 0.97701687 0.988576676 0.990683354 1 13.05635312 -7.258752282 24.995285 1.060116912 0.957595349 0.36892168 0.047292373 166.7409605 1551023.731 0.009288978 0.011107589 5.51E-08 7.258752282 -0.102521563 MPS(ph)FGVS(ph)APGKS(ph)MEASVDVSELK ddPTM_HeLa_CUDC101_4h_R1 1 MPSFGVSAPGKSMEASVDVSELK 23 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 3 0 MPS(0.997)FGVS(0.988)APGKS(0.932)MEAS(0.045)VDVS(0.039)ELK 41.689 0.0029166 0 681.78 729.52 676.44 695.68 802.4 597.3 624.53 767.6 704.97 693.35 TRUE FALSE FALSE 601.8627819 751.9956465 713.0103925 724.0528374 743.2085506 585.9074977 648.6183313 854.9804813 675.9108382 689.2259234 0.873244551 1.091072783 1.034508959 1.050530476 1.078323559 0.85009498 0.94108232 1.240493795 0.980681102 1 9.428833155 -7.258730166 24.9944965 0.940143261 1.03126388 0.135918176 0.100303082 355.0530779 3275631.433 0.017368952 0.020770445 5.51E-08 7.258730166 0.091120619 IEPGVDPDDTYNETPYEK ddPTM_HeLa_CUDC101_4h_R1 2 IEPGVDPDDTYNETPYEK 18 0 Q9H4A4;A6NKB8;C9JMZ3 Q9H4A4 RNPEP Aminopeptidase B 0 0 ; ; 201.95 6.36E-33 6984600 3934 3559.3 3139.3 3166.9 3718.5 3412.2 3647.8 2903.4 3742.1 3404 FALSE FALSE TRUE 3472.862484 3668.957814 3309.020054 3296.059871 3444.193663 3347.11797 3788.496868 3233.91132 3587.849054 3383.752857 1.026334555 1.084286581 0.977914225 0.974084104 1.017862063 0.989173297 1.11961394 0.955717352 1.06031652 1 11.72440849 S(ph)SDEENGPPSS(ph)PDLDR ddPTM_HeLa_CUDC101_4h_R1 1 SSDEENGPPSSPDLDR 16 0 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 2 0 S(0.992)S(0.008)DEENGPPS(0.141)S(0.859)PDLDR 305.85 1.01E-142 85719000 3078.3 2239.3 2192.9 1674.1 2261.8 2562.5 2674.1 2202.3 2338.4 2677.3 TRUE FALSE FALSE 2717.46634 2308.290179 2311.454807 1742.377034 2094.95152 2513.624582 2777.240933 2453.00093 2242.010162 2661.375301 1.02107596 0.867329827 0.868518922 0.654690465 0.787168769 0.944483321 1.043535999 0.921704252 0.842425404 1 11.37795625 -7.258662403 23.63292212 1.009952539 0.86771892 0.046716885 0.109488448 110.3365078 938996.9821 0.017683978 0.021137112 5.51E-08 7.258662403 -0.142233619 IEQHYFEDR ddPTM_HeLa_CUDC101_4h_R1 1 IEQHYFEDR 9 0 C9JNK6;O75431-2;O75431 C9JNK6 MTX2 Metaxin-2 0 0 100.82 0.015695 9674800 2626.1 2513.7 2520.4 2464.5 2445.8 2699.6 2293.3 2315.2 2607.8 3660.5 FALSE FALSE TRUE 2318.272539 2591.144118 2656.660448 2565.012962 2265.378207 2648.109628 2381.753349 2578.75301 2500.30538 3638.727183 0.637110842 0.712101784 0.730107072 0.704920384 0.622574349 0.727757123 0.654556725 0.708696442 0.687137357 1 11.82921817 -9.313241904 0.82151199 1.020208268 0.684084938 0 0.102411428 0.157965239 0.172513464 0.035154609 0.007427116 4.86E-10 9.313241904 -0.33612333 GTPGS(ph)PSGTQEPR ddPTM_HeLa_CUDC101_4h_R1 4 GTPGSPSGTQEPR 13 0 Q5SXM2 Q5SXM2 SNAPC4 snRNA-activating protein complex subunit 4 1 0 GT(0.088)PGS(0.635)PS(0.266)GT(0.01)QEPR;GT(0.076)PGS(0.831)PS(0.049)GT(0.044)QEPR;GT(0.003)PGS(0.921)PS(0.066)GT(0.01)QEPR;GT(0.038)PGS(0.919)PS(0.042)GTQEPR ;;; 153 0.00021518 77812000 4875.55 5275.29 4885.86 5149.49 5310.46 4898.2 5027.89 4468.99 5388.49 5012.32 TRUE FALSE FALSE 4304.04542 5437.815432 5150.004371 5359.50846 4918.717946 4804.774996 5221.817402 4977.721757 5166.374161 4982.506498 0.863831371 1.091381503 1.033617191 1.075665122 0.987197497 0.964328897 1.048030224 0.999039692 1.036902644 1 12.28265597 -7.258517901 24.96308566 0.935698148 1.027177664 0.132677819 0.057298786 220.5617815 1884628.955 0.010293282 0.012313581 5.51E-08 7.258517901 0.091479516 KDEWGLVAPIS(ph)PGPLTPMR ddPTM_HeLa_CUDC101_4h_R1 2 KDEWGLVAPISPGPLTPMR 19 1 A0A669KB77;P11137-3;P11137;E7EV03 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 KDEWGLVAPIS(0.999)PGPLT(0.001)PMR;KDEWGLVAPIS(0.999)PGPLT(0.001)PMR ; 140.13 2.26E-05 459070000 11029.1 11664.1 10738.2 10351.2 13059.1 11993.1 12110.9 9819.3 10512 10735.7 TRUE FALSE FALSE 9736.285617 12023.4571 11318.73957 10773.36668 12095.75621 11764.3516 12578.02147 10937.08942 10078.69091 10671.84358 0.912333989 1.126652298 1.06061708 1.009513173 1.133427052 1.102372942 1.178617488 1.024854735 0.944418913 1 13.38152181 -7.258399766 24.99997241 0.958602161 1.092027388 0.599388687 0.051846655 146.9719367 1208805.689 0.00939963 0.011252957 5.52E-08 7.258399766 0.133425227 RLAAAEETAVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 RLAAAEETAVSPR 13 1 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 0 RLAAAEETAVS(1)PR;RLAAAEETAVS(1)PR;RLAAAEET(0.001)AVS(0.999)PR ;; 128.45 0.00070493 200807900 4032.48 4186.5 4238.27 3896.55 4359.87 4035.49 3862.88 4037.99 4555.48 3920.69 TRUE FALSE FALSE 3559.798807 4315.481103 4467.403696 4055.468151 4038.251076 3958.519752 4011.872576 4497.658459 4367.701186 3897.369562 0.913384977 1.107280445 1.146261248 1.04056546 1.036147846 1.015690119 1.029379563 1.154024115 1.120679247 1 11.92828502 -7.258392519 24.99743052 0.959098461 1.071388102 0.006975079 0.071170827 174.4133267 1430945.113 0.009437233 0.011297676 5.52E-08 7.258392519 0.112289641 (ac)AESSESFTMAS(ph)SPAQR ddPTM_HeLa_CUDC101_4h_R1 3 AESSESFTMASSPAQR 16 0 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 1 0 AES(0.025)S(0.019)ES(0.001)FT(0.014)MAS(0.786)S(0.155)PAQR;AES(0.31)S(0.109)ES(0.003)FT(0.003)MAS(0.32)S(0.255)PAQR;AESSESFTMAS(0.5)S(0.5)PAQR ;; 111.64 0.00027524 100203000 462.26 557.86 739.33 723.81 502.15 642.01 353.93 399.029 242.4 428.47 TRUE FALSE FALSE 408.0745835 575.0470054 779.3004162 753.3301004 465.1073949 629.7647289 367.5811987 444.4528484 232.4081694 425.9214414 0.95809824 1.350124576 1.829681111 1.768706684 1.092002773 1.478593627 0.863025814 1.043508979 0.545659708 1 8.734443548 -7.258317189 22.14893454 0.980213038 1.358036241 0.324748819 0.317828491 58.51916251 415134.5657 0.050940314 0.060918579 5.52E-08 7.258317189 0.377823202 ITVNGDSS(ph)AEAEELANEI ddPTM_HeLa_CUDC101_4h_R1 2 ITVNGDSSAEAEELANEI 18 0 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 NAA15 "N-alpha-acetyltransferase 15, NatA auxiliary subunit" 1 0 ITVNGDS(0.01)S(0.99)AEAEELANEI;ITVNGDS(0.002)S(0.998)AEAEELANEI ; 214.46 8.88E-25 34766000 2898.35 2033.3 2171.25 1857.01 1957.51 2135.72 2075.8 2080.93 2086.31 2508.99 TRUE FALSE FALSE 2558.609807 2095.943563 2288.634343 1932.746894 1813.108387 2094.984699 2155.864301 2317.81466 2000.311419 2494.066416 1.025878778 0.840371992 0.917631675 0.774938022 0.726968767 0.839987534 0.86439731 0.929331571 0.802028128 1 11.28428417 -7.258247279 24.17983878 1.012220537 0.838646297 0.080708029 0.087279869 78.44792495 594234.7132 0.009945225 0.011903877 5.52E-08 7.258247279 -0.17357424 VPGS(ph)SGHLHK ddPTM_HeLa_CUDC101_4h_R1 1 VPGSSGHLHK 10 0 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 0 VPGS(0.5)S(0.5)GHLHK 75.819 0.03392 8926700 2808.1 1161.3 1118.4 1055.5 1580.8 1275 1361.4 963.11 1711 2207.5 TRUE FALSE FALSE 2478.938775 1197.078277 1178.864087 1098.547852 1464.187533 1250.681499 1413.909654 1072.746549 1640.471856 2194.369692 1.129681468 0.545522608 0.537222188 0.500621138 0.667247428 0.569950225 0.644335209 0.488863182 0.747582261 1 11.09959089 -7.258223521 24.99975862 1.061238475 0.568486992 0.686433099 0.116092262 51.41036196 399659.2172 0.011567019 0.013857612 5.52E-08 7.258223521 -0.492751483 LPQQDHTTT(ph)TDSEMEEPYLQESK ddPTM_HeLa_CUDC101_4h_R1 2 LPQQDHTTTTDSEMEEPYLQESK 23 0 B3KPJ4;A0A0A0MSI2;Q8IXK0-3;Q8IXK0-2;Q8IXK0-4;Q8IXK0;Q8IXK0-5 B3KPJ4 PHC2 Polyhomeotic-like protein 2 1 0 LPQQDHT(0.003)T(0.092)T(0.422)T(0.422)DS(0.062)EMEEPYLQESK;LPQQDHT(0.009)T(0.06)T(0.308)T(0.308)DS(0.301)EMEEPY(0.014)LQESK ; 117.38 1.83E-06 18437500 4906.5 2512.2 2319 2268.7 3065.3 3026.3 2786.1 2609.1 3584.7 3879.4 TRUE FALSE FALSE 4331.367508 2589.597904 2444.372155 2361.227392 2839.178926 2968.57837 2893.56081 2906.109398 3436.937149 3856.325156 1.123185243 0.671519594 0.63386049 0.61229987 0.736239505 0.769794623 0.750341502 0.753595529 0.891246721 1 11.91301099 -7.258174696 24.99789735 1.058170812 0.703288043 0.752103981 0.077354026 74.19744582 568135.2069 0.011900684 0.014254191 5.52E-08 7.258174696 -0.354882769 HLAPPPLLS(ph)PLLPSIKPTVR ddPTM_HeLa_CUDC101_4h_R1 2 HLAPPPLLSPLLPSIKPTVR 20 1 Q14676;Q14676-3;Q14676-2;H0Y6Z8 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 HLAPPPLLS(1)PLLPSIKPTVR;HLAPPPLLS(1)PLLPSIKPTVR ; 88.768 0.00099033 25873000 10993.3 9357.8 9753.3 10253.9 11249.7 9738.5 7733.9 2380.3 10855.9 12151.5 TRUE FALSE FALSE 9704.682039 9646.102726 10280.5929 10672.09836 10419.83204 9552.754338 8032.199114 2651.26373 10408.41521 12079.22234 0.803419439 0.798569846 0.851097249 0.883508728 0.86262441 0.790841833 0.664959953 0.219489604 0.861679247 1 13.56023996 -4.275381137 1.47848916 0.887378063 4.13E-17 0.91780129 0.057746103 0.308005303 0.614182284 0.012199178 0.396694435 5.30E-05 4.275381137 -0.887378063 down IESDVQEPTEPEDDLDIMLGNK ddPTM_HeLa_CUDC101_4h_R1 2 IESDVQEPTEPEDDLDIMLGNK 22 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 0 0 ; ; 209.85 2.75E-26 21892800 20981 18753 16320 18100 19098.6 17373.5 17679.5 17296.1 19086.4 20523.6 FALSE FALSE TRUE 18521.63899 19330.7577 17202.30857 18838.19623 17689.73433 17042.12943 18361.40424 19265.01811 18299.65051 20401.52471 0.907855626 0.947515344 0.843187399 0.923371978 0.867079033 0.835336068 0.900001568 0.944293056 0.896974651 1 14.31638936 -8.955757689 0.437390104 1.020270354 0.885411129 0.007437659 0.047674665 0.899624235 0.272811773 0.054076322 0.011639967 1.11E-09 8.955757689 -0.134859226 FS(ph)SVSHSGESSFTYR ddPTM_HeLa_CUDC101_4h_R1 2 FSSVSHSGESSFTYR 15 0 F8VXG7 F8VXG7 SCAF11 1 0 FS(0.805)S(0.194)VS(0.001)HSGESSFTYR;FS(0.5)S(0.5)VSHSGESSFTYR ; 76.868 0.026399 103742000 3608.4 6262.6 6502.7 7800.6 6162.8 5458.4 5830.3 3705.7 6076.5 4210.1 TRUE FALSE FALSE 3185.428822 6455.543283 6854.255632 8118.742185 5708.182522 5354.290114 6055.176624 4127.541909 5826.024098 4185.058138 0.761143267 1.542521769 1.637792214 1.939935341 1.363943423 1.279382493 1.446856035 0.986256767 1.392101114 1 12.03103195 -7.258156682 24.98330133 0.887206538 1.471460537 0.243049019 0.286391247 160.5581906 1221944.993 0.042367591 0.050747761 5.52E-08 7.258156682 0.584253998 ENS(ph)PSSQSAGLSSINK ddPTM_HeLa_CUDC101_4h_R1 1 ENSPSSQSAGLSSINK 16 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2 H3BSS6 ZNF106 Zinc finger protein 106 1 0 ENS(0.844)PS(0.094)S(0.043)QS(0.004)AGLS(0.012)S(0.003)INK 104.44 0.0028022 7814300 1475.4 951.35 1041.6 956.41 1109.4 806.82 912.34 989.47 1082.8 1245.8 TRUE FALSE FALSE 1302.455849 980.6599659 1097.912047 995.4165338 1027.561772 791.4312528 947.5292594 1102.107265 1038.166526 1238.389926 1.051733239 0.791883029 0.886564097 0.803798959 0.829756243 0.639080823 0.76512998 0.889951736 0.838319582 1 10.27424993 -7.258142941 24.93852424 1.024429587 0.797800944 0.356603165 0.0892757 111.2263471 841460.4447 0.011640286 0.013942128 5.52E-08 7.258142941 -0.226628643 RES(ph)EDDPES(ph)EPDDHEK ddPTM_HeLa_CUDC101_4h_R1 2 RESEDDPESEPDDHEK 16 1 P16383-3;P16383-4;P16383 P16383-3 GCFC2 GC-rich sequence DNA-binding factor 2 2 0 RES(1)EDDPES(1)EPDDHEK;RES(1)EDDPES(1)EPDDHEK ; 109.84 0.00092571 98099000 6684.9 5560.1 5190.2 5530.6 6056.4 5695.2 5737.3 5529.3 6653.6 5899.1 TRUE FALSE FALSE 5901.306156 5731.400091 5470.797911 5756.161773 5609.631438 5586.573549 5958.589583 6158.733162 6379.335792 5864.011891 1.006359855 0.977385482 0.932944546 0.981608135 0.956620065 0.952687964 1.016128496 1.050259324 1.087879068 1 12.51767231 -7.25810025 23.12912019 1.003003265 0.978572739 0.143541442 0.041252983 176.8464392 1224955.926 0.00542285 0.006499019 5.52E-08 7.25810025 -0.024430526 DSGS(ph)ISLQETR ddPTM_HeLa_CUDC101_4h_R1 2 DSGSISLQETR 11 0 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 DS(0.001)GS(0.989)IS(0.01)LQETR;DS(0.001)GS(0.996)IS(0.004)LQETR ; 178.22 2.17E-07 53024000 5038 3067.47 3589.4 3542.71 3087.3 3258.3 3431.4 3755 3608.2 3763.93 TRUE FALSE FALSE 4447.453277 3161.975115 3783.453821 3687.197027 2859.55603 3196.153356 3563.750247 4182.454022 3459.468469 3741.541977 1.18866855 0.845099463 1.011201757 0.985475253 0.764272069 0.854234264 0.952481696 1.117842335 0.924610359 1 11.86941725 -7.258066957 24.98762168 1.089093482 0.929210984 0.103286419 0.114376627 272.7421809 2020856.131 0.019343826 0.023174762 5.52E-08 7.258066957 -0.159882498 LNSSSSSSSNSSNEREDFDSTSSSSS(ph)TPPLQPR ddPTM_HeLa_CUDC101_4h_R1 1 LNSSSSSSSNSSNEREDFDSTSSSSSTPPLQPR 33 1 A0A669KAX4;Q13620-1;Q13620;A0A669KAU9;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 1 0 LNSSSSSSSNSSNEREDFDS(0.029)T(0.029)S(0.095)S(0.095)S(0.095)S(0.095)S(0.315)T(0.248)PPLQPR 85.412 5.94E-09 24059000 696.38 417.19 470.65 481.35 487.51 375.09 259.87 631.18 737.68 552.58 TRUE FALSE FALSE 614.751392 430.0431294 496.0947626 500.9815336 451.5473586 367.9357832 269.893273 703.0309799 707.2725182 549.2932296 1.119167976 0.782902658 0.90315106 0.912047531 0.822051564 0.669834914 0.49134644 1.279882842 1.287604653 1 9.1014327 -7.257934477 24.88445469 1.056273768 0.822387786 0.284286611 0.204675268 288.6198829 2049173.628 0.030570936 0.036628274 5.52E-08 7.257934477 -0.233885982 IETIEVMEDR ddPTM_HeLa_CUDC101_4h_R1 4 IETIEVMEDR 10 0 P51991;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 ;;; ;;; 200.56 2.95E-16 289396000 11972.3 11143 9835.5 10124.1 11006.9 10648.2 10074.6 10265.3 11374.9 11105.3 FALSE FALSE TRUE 10568.92514 11486.30262 10367.23688 10537.00456 10194.94292 10445.10333 10463.1807 11433.86026 10906.02181 11039.24518 0.957395634 1.040497102 0.939125521 0.954504079 0.923518116 0.946179123 0.947816678 1.035746563 0.98793184 1 13.43035391 NY(ph)NLQMSGET(ph)LK ddPTM_HeLa_CUDC101_4h_R1 1 NYNLQMSGETLK 12 0 P21817-3;P21817-2;P21817 P21817-3 RYR1 Ryanodine receptor 1 2 0 NY(1)NLQMS(0.007)GET(0.993)LK 70.908 0.0032966 0 893.77 1020.8 1105.1 903.14 1018.8 1257.2 1030.3 1005.6 1078.2 763.19 TRUE FALSE FALSE 789.0036355 1052.249638 1164.845049 939.9739529 943.6451537 1233.221005 1070.039016 1120.073439 1033.75614 758.6505119 1.040009363 1.387001816 1.535417205 1.239007867 1.243846987 1.625545604 1.410450529 1.476402403 1.362624981 1 9.567291621 -7.257907871 4.565570651 1.017359618 1.417766515 0.345892918 0.155657696 0.073040238 4.114542687 0.01895692 0.022485844 5.52E-08 7.257907871 0.400406897 QQLEEEEENFSRPQIDENPLDDNS(ph)EEEMEDAPK ddPTM_HeLa_CUDC101_4h_R1 2 QQLEEEEENFSRPQIDENPLDDNSEEEMEDAPK 33 1 Q5F1R6;Q5F1R6-3;Q5F1R6-2;A0A2R8Y534;A0A2R8Y4Q0;A0A2R8Y4N5 Q5F1R6 DNAJC21 DnaJ homolog subfamily C member 21 1 0 QQLEEEEENFSRPQIDENPLDDNS(1)EEEMEDAPK;QQLEEEEENFSRPQIDENPLDDNS(1)EEEMEDAPK ; 116.28 8.18E-16 29665200 7892.5 7221.2 7421.9 6722.9 7917.3 7570.8 6886.6 6706.3 8146 7205.7 TRUE FALSE FALSE 6967.353114 7443.676613 7823.150364 6997.088921 7333.256552 7426.399604 7152.218469 7469.718084 7810.218432 7162.840176 0.972708164 1.039207414 1.092185526 0.976859563 1.023791732 1.03679538 0.99851711 1.042843048 1.090380106 1 12.80631604 -7.257807752 24.98651821 0.987112188 1.02918264 0 0.043657069 281.7234661 1938320.998 0.004881226 0.005848711 5.52E-08 7.257807752 0.042070452 DAGLLVEQPPLAGVAAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 DAGLLVEQPPLAGVAASPR 19 0 Q13469-3;Q13469-4;Q13469-2;Q13469 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 0 DAGLLVEQPPLAGVAAS(1)PR 85.177 0.0048404 4073800 1679.3 971.05 1161 947.96 855.14 790.73 864.67 1746 1235.1 1314.7 TRUE FALSE FALSE 1482.455 1000.9669 1223.767172 986.6219062 792.0580259 775.6481427 898.0206115 1944.757582 1184.188655 1306.880106 1.134346596 0.765920986 0.936403551 0.754944468 0.606067858 0.593511325 0.687148429 1.48809181 0.906118817 1 10.35191108 -7.2577791 24.73375085 1.063441449 0.81055157 0.084763805 0.248582927 335.1783994 2264915.303 0.039873726 0.047826193 5.52E-08 7.2577791 -0.252889879 IEVEK(ac)PFAIAKE ddPTM_HeLa_CUDC101_4h_R1 1 IEVEKPFAIAKE 12 2 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 1 IEVEK(1)PFAIAKE 122.55 0.011701 300960 487.75 211.79 74.39 180.31 394.73 477.17 555.17 501.09 442.75 423.52 FALSE TRUE FALSE 430.5766844 218.3149989 78.41174842 187.6638212 365.6115543 468.0687773 576.5830929 558.1320601 424.4996576 421.0008842 1.022745321 0.518561854 0.186250793 0.445756359 0.868434172 1.111799986 1.369553164 1.325726575 1.008310608 1 8.717679453 TGSEPALS(ph)PAVVR ddPTM_HeLa_CUDC101_4h_R1 2 TGSEPALSPAVVR 13 0 O75815;O75815-3;O75815-2 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 0 TGSEPALS(1)PAVVR;TGSEPALS(1)PAVVR ; 151.3 0.0002899 170518000 4819.7 3069 3266.3 3259.9 2909.2 2901.5 2535.3 4370.1 3679.3 3971.4 TRUE FALSE FALSE 4254.742072 3163.552252 3442.886058 3392.852812 2694.594112 2846.158722 2633.08737 4867.574519 3527.637697 3947.777936 1.077756181 0.801350102 0.872107326 0.859433552 0.682559697 0.720952082 0.666979605 1.232990963 0.893575514 1 11.94682512 -7.257744891 24.70187692 1.036718198 0.819659696 0.148438847 0.158393081 235.7274202 1576107.662 0.024192544 0.029034349 5.52E-08 7.257744891 -0.217058502 IEVIEIMTDR ddPTM_HeLa_CUDC101_4h_R1 2 IEVIEIMTDR 10 0 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8VZ49;A0A2R8Y4L2;Q32P51;H0YH80;F8VYN5 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 ; ; 147.2 0.0037406 13375300 2703.5 2358.5 2311.5 2233.91 2498.1 2276.8 1929.52 2237.2 2514.3 2404.4 FALSE FALSE TRUE 2386.599828 2431.162589 2436.466682 2325.018506 2313.82014 2233.373833 2003.942233 2491.873805 2410.65949 2390.098522 0.998536172 1.01718091 1.019400104 0.97277099 0.968085675 0.93442752 0.838434991 1.042582045 1.008602561 1 11.22285437 -5.654451055 1.909968783 1.001818272 0.930118954 0.277076497 0.047129199 0.285752206 2.104245959 0.006423608 0.015392131 2.22E-06 5.654451055 -0.071699318 FLESAAADFS(ph)DEDEDDDVDGREK ddPTM_HeLa_CUDC101_4h_R1 4 FLESAAADFSDEDEDDDVDGREK 23 1 O43815-2;O43815 O43815-2 STRN Striatin 1 0 FLESAAADFS(1)DEDEDDDVDGREK;FLES(0.001)AAADFS(0.999)DEDEDDDVDGREK;FLESAAADFS(1)DEDEDDDVDGREK;FLES(0.018)AAADFS(0.982)DEDEDDDVDGREK ;;; 161.04 4.16E-08 61928000 9773.89 9738.13 9315.2 8641.34 11286.3 9404.32 8664.41 9582.33 9707.1 9464.72 TRUE FALSE FALSE 8628.20943 10038.15024 9818.807889 8993.771196 10453.73213 9224.948265 8998.599196 10673.14371 9306.969229 9408.423425 0.917072823 1.066932236 1.043618835 0.955927555 1.111103493 0.980498841 0.956440712 1.134424253 0.989216664 1 13.19973727 -7.257742217 24.99672563 0.960839944 1.030554892 0.197520351 0.060492124 360.5601036 2437772.062 0.010130258 0.012148727 5.52E-08 7.257742217 0.069714948 STIGVMVTAS(ph)HNPEEDNGVK ddPTM_HeLa_CUDC101_4h_R1 9 STIGVMVTASHNPEEDNGVK 20 0 D6RC77;D6RCQ8;D6RF77;A0A494C163;A0A494C099;A0A494C0G1;H0Y987;O95394;O95394-3;O95394-4 D6RC77 PGM3 Phosphoacetylglucosamine mutase 1 0 STIGVMVT(0.088)AS(0.912)HNPEEDNGVK;STIGVMVT(0.111)AS(0.889)HNPEEDNGVK;STIGVMVT(0.022)AS(0.978)HNPEEDNGVK;STIGVMVT(0.006)AS(0.994)HNPEEDNGVK;STIGVMVTAS(1)HNPEEDNGVK;STIGVMVT(0.075)AS(0.925)HNPEEDNGVK;STIGVMVT(0.322)AS(0.678)HNPEEDNGVK;STIGVMVT(0.236)AS(0.763)HNPEEDNGVK;STIGVMVT(0.109)AS(0.891)HNPEEDNGVK ;;;;;;;; 150.64 1.08E-05 2710137000 37773.5 29168.2 28315 27234.8 35162.6 31190.9 31720.5 21727.5 32243.1 33092.1 TRUE FALSE FALSE 33345.74759 30066.83767 29845.79455 28345.55286 32568.72505 30595.98555 32943.97031 24200.87077 30914.02577 32895.26672 1.013694398 0.914017142 0.907297539 0.861690927 0.990073293 0.930102978 1.001480565 0.735694621 0.939771245 1 15.00559239 -7.257707654 22.83193571 1.0064668 0.911989087 0.176730036 0.072534201 84.74418235 518491.4 0.010682006 0.012803235 5.52E-08 7.257707654 -0.094477713 PAANRAS(ph)GEWDSGTENR ddPTM_HeLa_CUDC101_4h_R1 1 PAANRASGEWDSGTENR 17 1 A0A0U1RQE4;A0A494C1M0;Q5HYK7-3;Q5HYK7-2;Q5HYK7;A0A0U1RQN2 A0A0U1RQE4 SH3D19 SH3 domain-containing protein 19 1 0 PAANRAS(0.993)GEWDS(0.006)GT(0.001)ENR 58.164 0.031284 6395100 433.21 526.38 455.14 436 594.11 712.63 408.94 378.48 537.2 460.62 TRUE FALSE FALSE 382.4297805 542.5971439 479.7462451 453.7819646 550.2836889 699.0377701 424.7129528 421.5646333 515.0563886 457.8802118 0.835217969 1.185019859 1.047754921 0.991049521 1.201807099 1.526682639 0.927563458 0.9206876 1.124871474 1 8.838826407 -7.257706461 24.96526215 0.922186263 1.119098191 0.06147945 0.1815351 375.1082083 2508675.612 0.02997199 0.035954178 5.52E-08 7.257706461 0.196911928 IEWLESHQDADIEDFK ddPTM_HeLa_CUDC101_4h_R1 3 IEWLESHQDADIEDFK 16 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ;; ;; 189.04 4.26E-11 185322000 20266.6 16079.9 16164.9 16646.8 15602.2 17825.7 15876.7 15309.3 17175.9 15804.4 FALSE FALSE TRUE 17890.97987 16575.30266 17038.82339 17325.72846 14451.25679 17485.70447 16489.06964 17052.04883 16467.90213 15710.39473 1.138798877 1.055053227 1.084557307 1.102819424 0.919853195 1.113002237 1.049564312 1.085399134 1.048216956 1 13.93943181 IEYDCELVPR ddPTM_HeLa_CUDC101_4h_R1 2 IEYDCELVPR 10 0 Q9P258 Q9P258 RCC2 Protein RCC2 0 0 ; ; 128.36 0.015446 14400000 1837.96 1824.3 1540.38 1471.77 1825.53 1590.9 1675.86 1431.71 1734.65 991.5 FALSE FALSE TRUE 1622.517115 1880.504521 1623.657602 1531.795142 1690.864289 1560.556233 1740.498482 1594.690079 1663.146993 985.6025139 1.646218523 1.907974558 1.647375671 1.554171302 1.715564099 1.583352529 1.765923338 1.617984996 1.687441914 1 9.944862126 -8.999812169 0.725467973 0.979467804 1.685332193 0 0.23070901 0.196232412 0.183127839 0.079094364 0.022274756 1.00E-09 8.999812169 0.705864389 IEYNDQNDGSCDVK ddPTM_HeLa_CUDC101_4h_R1 2 IEYNDQNDGSCDVK 14 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 0 ; ; 212.83 3.67E-23 25509000 4762.9 3918.4 3880.7 4402.7 3777.8 4324.1 3955.1 4746.4 3595.2 3830.6 FALSE FALSE TRUE 4204.600082 4039.12126 4090.50238 4582.261136 3499.11922 4241.624997 4107.649532 5286.71099 3447.004334 3807.815421 1.104202703 1.060745024 1.074238619 1.203383208 0.918930892 1.113926104 1.078741766 1.388384259 0.905244597 1 11.89474783 -4.238675541 3.502410272 1.058650123 1.437232817 0.583434442 0.085410359 0.158406732 3.195641392 0.009756917 0.161987334 5.77E-05 4.238675541 0.378582694 IEYQFFEDR ddPTM_HeLa_CUDC101_4h_R1 1 IEYQFFEDR 9 0 Q9NYU2-2;Q9NYU2 Q9NYU2-2 UGGT1 UDP-glucose:glycoprotein glucosyltransferase 1 0 0 129.85 0.018416 2735100 1515.3 1142.3 976.2 1204.4 1390.1 1348.9 1077.5 1200.9 1192.4 1398.4 FALSE FALSE TRUE 1337.678831 1177.492909 1028.976325 1253.520638 1287.555092 1323.17198 1119.059536 1337.605602 1143.248767 1390.082255 0.962301926 0.847067075 0.740226934 0.901760046 0.926243816 0.95186596 0.805031164 0.962249246 0.822432459 1 10.44095454 -7.392343101 4.286994002 0.983865175 0.874423509 0 0.081959377 0.181578033 5.380874552 0.011339772 0.012850288 4.05E-08 7.392343101 -0.109441666 IFDFDDDGTLNREDLSR ddPTM_HeLa_CUDC101_4h_R1 2 IFDFDDDGTLNREDLSR 17 1 Q99828;Q99828-2 Q99828 CIB1 Calcium and integrin-binding protein 1 0 0 ; ; 108.36 0.0015319 6821800 1792.45 1849.59 2021.21 1897.17 2349.1 2312.17 1761.24 1561.85 1944.47 1737.02 FALSE FALSE TRUE 1582.341728 1906.573676 2130.482726 1974.544793 2175.811573 2268.06921 1829.171617 1739.644691 1864.318124 1726.688128 0.916402738 1.104179524 1.233854969 1.143544547 1.260106871 1.31353727 1.059352634 1.007503708 1.079707501 1 10.75379181 -7.090907783 4.284952822 0.961002275 1.174044557 0.372913332 0.095024504 0.132443956 4.315536405 0.015571288 0.019352154 8.11E-08 7.090907783 0.213042282 IFDIDEAEEGVK ddPTM_HeLa_CUDC101_4h_R1 1 IFDIDEAEEGVK 12 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 0 0 202.56 7.17E-16 16066000 1336.8 863.75 1008.9 1047.1 950.68 971.76 871.93 768.59 1049.4 1437.2 FALSE FALSE TRUE 1180.10233 890.3611137 1063.444186 1089.805264 880.5502304 953.2252971 905.5606322 856.0831789 1006.143288 1428.65147 0.82602535 0.623217861 0.744369224 0.762820944 0.616350628 0.667220324 0.633856928 0.599224651 0.704260842 1 10.48043829 -7.882781111 0.336822357 1.045990087 0.601484017 0.183589003 0.105823282 0.33881498 0.109265862 0.059921318 0.03825484 1.31E-08 7.882781111 -0.44450607 AYLGYQAVPSGSSGSLST(ph)SSSSSPPGTPSPADAK ddPTM_HeLa_CUDC101_4h_R1 1 AYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAK 34 0 P17676;P17676-2;P17676-3 P17676 CEBPB CCAAT/enhancer-binding protein beta 1 0 AYLGYQAVPSGSSGS(0.004)LS(0.022)T(0.215)S(0.215)S(0.215)S(0.215)S(0.056)S(0.056)PPGT(0.001)PSPADAK 98.364 3.88E-12 15083000 5026.1 4671.1 4520.2 4800.5 5847.8 5148.5 3908 4003.3 4602.4 4543.6 TRUE FALSE FALSE 4436.948177 4815.011054 4764.575685 4996.28514 5416.419444 5050.30094 4058.732869 4459.01949 4412.687124 4516.574465 0.982370204 1.06607587 1.05490914 1.106211174 1.199231738 1.118170636 0.898630788 0.987256941 0.976998643 1 12.14101328 -7.257651882 23.48893437 0.991674818 1.064177402 0.170963829 0.075302723 204.207239 1266430.013 0.013613697 0.016332068 5.53E-08 7.257651882 0.072502584 IFDPQNPDENE ddPTM_HeLa_CUDC101_4h_R1 3 IFDPQNPDENE 11 0 P46109 P46109 CRKL Crk-like protein 0 0 ;; ;; 123.35 0.019475 43634500 15644.6 14849.5 13255.3 12582.9 14480.9 13766.6 12829.9 13354.9 14140.5 14806.1 FALSE FALSE TRUE 13810.7637 15306.99549 13971.92161 13096.08505 13412.67286 13504.02504 13324.75354 14875.16783 13557.6226 14718.03266 0.938356642 1.04001641 0.949306333 0.889798613 0.911308812 0.917515632 0.905335234 1.010676371 0.921157258 1 13.84529722 -6.523829321 24.99547816 0.976185512 0.923858427 0.21617223 0.042823947 32.71259747 860176.6084 0.006434002 0.009145056 2.99E-07 6.523829321 -0.052327085 IFIGTFK ddPTM_HeLa_CUDC101_4h_R1 1 IFIGTFK 7 0 J3QLE5;P14678-2;P63162;P14678;P63162-2;P14678-3;J3KRY3;S4R3P3 J3QLE5 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N 0 0 121.29 0.027638 4153800 1938.8 1602.7 1441.7 1529.3 1684.6 1884.5 1644.9 1586.8 1585 1269.4 FALSE FALSE TRUE 1711.536803 1652.077287 1519.642663 1591.671464 1560.330414 1848.556302 1708.344344 1767.434898 1519.665629 1261.849552 1.356371526 1.309250603 1.204297818 1.261379743 1.236542353 1.464957767 1.353841542 1.400670068 1.204316019 1 10.3013242 -12.10961275 0.272162791 1.02E-11 1.357728029 0.373711484 0.09788833 8.739419296 0.231885213 4.76675841 0.041590377 7.77E-13 12.10961275 1.357728029 KQPPVSPGTALVGSQKEPSEVPT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 KQPPVSPGTALVGSQKEPSEVPTPK 25 2 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 KQPPVSPGTALVGS(0.004)QKEPS(0.357)EVPT(0.639)PK;KQPPVSPGTALVGS(0.01)QKEPS(0.105)EVPT(0.884)PK ; 85.157 3.10E-05 1024030000 6761.2 7296.8 7405.7 7181.4 9152.6 7798.9 6518.3 3976.9 6320 6710 TRUE FALSE FALSE 5968.662385 7521.605759 7806.074543 7474.288533 8477.430933 7650.148976 6769.713014 4429.614221 6059.486925 6670.088622 0.894840042 1.127662043 1.170310469 1.1205681 1.270962264 1.146933633 1.014935992 0.664101254 0.908456734 1 12.70349021 -7.257540574 24.73585439 0.950341131 1.087312759 0.139357508 0.154451109 438.1354614 2779736.007 0.026456897 0.031748261 5.53E-08 7.257540574 0.136971628 IFRDGEEAGAYDGPR ddPTM_HeLa_CUDC101_4h_R1 2 IFRDGEEAGAYDGPR 15 1 P30101;H7BZJ3 P30101;H7BZJ3 PDIA3 Protein disulfide-isomerase A3 0 0 ; ; 123.63 0.0010476 70553000 2455.8 3031.2 2992.3 3057.1 4790.3 4391.1 3776.4 4355.1 3125.9 3590.6 FALSE FALSE TRUE 2167.934847 3124.587679 3154.072789 3181.781752 4436.929113 4307.347084 3922.057013 4850.86698 2997.049079 3569.242952 0.607393466 0.875420284 0.883681171 0.891444431 1.243100896 1.20679571 1.09884843 1.359074472 0.839687609 1 11.80140239 -5.832760061 3.985750583 0.822486272 1.218110713 0.737800559 0.109971238 0.118786337 3.704463607 0.023332747 0.044446179 1.47E-06 5.832760061 0.395624442 IFREEQNGEDEDGGWR ddPTM_HeLa_CUDC101_4h_R1 4 IFREEQNGEDEDGGWR 16 1 I1E4Y6;Q6Y7W6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;E7ESB6;C9JH78;C9IYH5 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 0 0 ;;; ;;; 155.57 0.00012338 37909000 7951.5 7653.38 7811.34 7011.42 8924.1 8802.15 10011.95 9686.86 9074.68 8695.87 FALSE FALSE TRUE 7019.437224 7889.171566 8233.644668 7297.376014 8265.786922 8634.263654 10398.11427 10789.57299 8700.617849 8644.146579 0.812045141 0.91266055 0.952510996 0.844198551 0.95622938 0.998856692 1.202908138 1.248194126 1.006532891 1 13.07750782 -4.817728899 1.862149927 0.909281854 1.261508259 0.796997081 0.059395601 0.141945981 0.899094044 0.010548978 0.059478579 1.52E-05 4.817728899 0.352226405 IFSK(ac)FGK ddPTM_HeLa_CUDC101_4h_R1 1 IFSKFGK 7 1 P55884;P55884-2;C9JZG1 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 1 IFSK(1)FGK 84.568 0.039864 645880 379.17 451.16 220.12 323.28 254.59 272.05 229.28 345.45 251.1 129.6 FALSE TRUE FALSE 334.7242674 465.0597048 232.020353 336.4647557 235.8094029 266.8610995 238.1234064 384.7746316 240.7495517 128.8291334 2.598203205 3.609895467 1.800992888 2.611713257 1.830404324 2.071434406 1.848366127 2.986705114 1.868750843 1 7.009315071 -9.218730982 0.997576364 1.014000639 2.394557971 0.257919152 0.603953447 0.366391588 0.664732082 0.348966203 0.101294308 6.04E-10 9.218730982 1.380557333 TDASSASS(ph)FLDSDELER ddPTM_HeLa_CUDC101_4h_R1 3 TDASSASSFLDSDELER 17 0 Q14498-2;Q14498;G3XAC6;Q14498-3;H0Y4X3;A0A0U1RQW2;A0A0U1RQH7 Q14498-2 RBM39 RNA-binding protein 39 1 0 TDASSAS(0.013)S(0.987)FLDSDELER;TDASSAS(0.02)S(0.98)FLDSDELER;TDAS(0.001)S(0.013)AS(0.32)S(0.666)FLDSDELER ;; 332.39 2.08E-191 25677600 4757.6 3511.6 2898.35 3344.14 4133 3404.45 3483.44 4103.27 3793.76 4134.39 TRUE FALSE FALSE 4199.92134 3619.788234 3055.043568 3480.528484 3828.116824 3339.515788 3617.797448 4570.369671 3637.379607 4109.798464 1.021928782 0.880770253 0.743356054 0.846885441 0.93146096 0.8125741 0.880285853 1.112066616 0.885050602 1 12.00485193 -7.257452631 23.17887291 1.01035526 0.878336921 0.08119531 0.098456929 108.679758 631859.971 0.014785638 0.017739215 5.53E-08 7.257452631 -0.132018339 TRNS(ph)GIWESPELDR ddPTM_HeLa_CUDC101_4h_R1 2 TRNSGIWESPELDR 14 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 T(0.113)RNS(0.887)GIWESPELDR;TRNS(1)GIWESPELDR ; 106.31 0.0025103 45225000 1646.79 1694 1632.24 1438.27 1793.07 1595.99 1700.13 1406.48 1909.18 1672.69 TRUE FALSE FALSE 1453.755773 1746.190132 1720.483832 1496.928867 1660.798798 1565.54915 1765.704584 1566.587998 1830.482792 1662.740765 0.874312943 1.050187839 1.034727642 0.900277962 0.998832069 0.941547343 1.061924156 0.942172124 1.10088285 1 10.69934754 -7.257421549 24.99695216 0.940647779 0.989473712 0 0.075603774 592.2831948 3684891.756 0.010819065 0.012998722 5.53E-08 7.257421549 0.048825932 IFTCCSIMMK ddPTM_HeLa_CUDC101_4h_R1 1 IFTCCSIMMK 10 0 A0A590UJ01;Q13535-2;Q13535-3;Q13535 A0A590UJ01 ATR Serine/threonine-protein kinase ATR 0 0 63.216 0.034826 15074000 3794.2 6309.9 4846.5 6090.1 9816.5 9082.7 7975.2 5332.7 7746.2 3066.2 FALSE FALSE TRUE 3349.449628 6504.30054 5108.51645 6338.480602 9092.356352 8909.46263 8282.806136 5939.753012 7426.898357 3047.962106 1.098914459 2.133983401 1.676043295 2.079579857 2.983093633 2.923088385 2.717489866 1.948762093 2.436676736 1 11.57362925 -6.759052825 0.879976588 1.01087023 2.646223879 0.240304501 0.576072939 0.175137395 0.271179223 0.074346213 0.119106158 1.74E-07 6.759052825 1.635353649 IFTGNK(ac)FTK ddPTM_HeLa_CUDC101_4h_R1 2 IFTGNKFTK 9 1 E9PFE2;Q9UHL9-2;Q9UHL9;Q9UHL9-3 E9PFE2 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 0 1 ; IFTGNK(1)FTK;IFTGNK(1)FTK 125.97 0.0021857 1194760 329.44 374.14 401.27 842.92 831.85 977.1 956.06 1262.15 0 0 FALSE TRUE FALSE 290.8235426 385.6668099 422.96387 877.297921 770.4860828 958.4634455 992.9355545 1405.828054 0 0 0 IFTSIGEDYDER ddPTM_HeLa_CUDC101_4h_R1 3 IFTSIGEDYDER 12 0 P35232;D6RBK0;C9JZ20;E7ESE2;E9PCW0;C9JW96;P35232-2 P35232 PHB Prohibitin 0 0 ;; ;; 263.11 6.51E-69 201983000 3514.17 3485 3542 3071.28 3492.12 3200.7 3488.78 3192.19 3437.4 3826.24 FALSE FALSE TRUE 3102.24432 3592.368719 3733.491234 3196.540074 3234.513265 3139.65198 3623.343413 3555.576006 3295.708917 3803.481354 0.815632845 0.944494894 0.981598406 0.840424804 0.850408603 0.825467956 0.952638669 0.934821464 0.866497982 1 11.89310482 -6.236143486 24.92137392 0.91827651 0.879988881 0.097165052 0.061878899 2042.580507 2012339.277 0.012200554 0.020227262 5.81E-07 6.236143486 -0.038287629 SSVKT(ph)PESIVPIAPELQPSTSR ddPTM_HeLa_CUDC101_4h_R1 1 SSVKTPESIVPIAPELQPSTSR 22 1 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.036)S(0.036)VKT(0.916)PES(0.013)IVPIAPELQPSTSR 62.823 0.012633 33422000 1434.5 1464.2 1425.7 1244.9 1357.6 1309.1 843.65 461.99 1521 1634.1 TRUE FALSE FALSE 1266.350085 1509.310266 1502.777655 1295.672403 1257.452553 1284.131099 876.1898631 514.5810742 1458.303736 1624.380301 0.779589659 0.929160657 0.925139054 0.797641047 0.774112166 0.790535996 0.539399464 0.316786084 0.897760048 1 10.66567372 -4.275254915 0.816949445 0.895326793 2.03E-19 0.89515911 0.062972706 0.726907768 0.35292142 0.01419813 0.58522809 5.31E-05 4.275254915 -0.895326793 down IFVGGLNPEATEEK ddPTM_HeLa_CUDC101_4h_R1 2 IFVGGLNPEATEEK 14 0 Q99729-3;D6R9P3;D6RD18;D6RBZ0;Q99729-2 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 0 0 ; ; 197.07 1.03E-15 28209000 5507.6 4838.1 4732.5 4916.1 5267 5087.3 4742.6 4934.8 5491.3 5607.7 FALSE FALSE TRUE 4862.007477 4987.156126 4988.353265 5116.599807 4878.463903 4990.268229 4925.523671 5496.557685 5264.94629 5574.345151 0.872211416 0.894662241 0.894877 0.917883566 0.875163588 0.895220531 0.883605794 0.986045452 0.944495927 1 12.44458662 -9.364047732 1.030259106 1.001378453 0.89871129 0.349631816 0.034914806 0.285991698 0.531592663 0.021823332 0.005364273 4.32E-10 9.364047732 -0.102667163 RKADTTTPTPTAILAPGS(ph)PASPPGSLEPK ddPTM_HeLa_CUDC101_4h_R1 2 RKADTTTPTPTAILAPGSPASPPGSLEPK 29 2 P25440-2;P25440;A0A0G2JK44;A0A140T9E9;H0Y6K2;P25440-3;P25440-4;A0A0G2JHL0;A0A140T9V2;A0A140T9F7;U3KQA6;E9PIQ3;H0YDJ7;U3KPW0 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 RKADTTTPTPTAILAPGS(0.759)PAS(0.24)PPGS(0.001)LEPK;RKADTTTPTPTAILAPGS(0.773)PAS(0.223)PPGS(0.004)LEPK ; 93.949 4.95E-09 54503000 2218.9 2624.1 2805.8 2464 2863.6 2657.2 2468.5 2846.9 2569.4 2067.1 TRUE FALSE FALSE 1958.803906 2704.945411 2957.490035 2564.49257 2652.357933 2606.518337 2563.710872 3170.979588 2463.488244 2054.804797 0.9532798 1.316400183 1.439304619 1.248046809 1.290807738 1.268499247 1.247666384 1.543202348 1.198891616 1 11.00478563 -7.257376815 22.8200611 0.977937672 1.329081072 0.550775098 0.112429209 32.3859893 181916.6054 0.014105482 0.016922291 5.53E-08 7.257376815 0.3511434 LSSWDQAETPGHT(ph)PSLR ddPTM_HeLa_CUDC101_4h_R1 3 LSSWDQAETPGHTPSLR 17 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 LSSWDQAETPGHT(0.677)PS(0.323)LR;LSSWDQAET(0.009)PGHT(0.812)PS(0.179)LR;LSSWDQAETPGHT(0.888)PS(0.112)LR ;; 153.83 0.00012076 28707900 6706.6 4844.8 4765.8 4225.2 5292.1 5684.6 5256.9 4176 5446.1 5742.8 TRUE FALSE FALSE 5920.462515 4994.062545 5023.453564 4397.521919 4901.712326 5576.175726 5459.660394 4651.37896 5221.609453 5708.64157 1.037105315 0.874825032 0.879973546 0.770327207 0.858647765 0.976795558 0.956385215 0.814796113 0.914685112 1 12.47893177 -7.25736446 24.68983123 1.017521956 0.878360787 0.327873924 0.065695197 166.611899 1009497.1 0.010114568 0.012149461 5.53E-08 7.25736446 -0.139161168 RTTS(ph)SSDLTTSSSSSGPR ddPTM_HeLa_CUDC101_4h_R1 1 RTTSSSDLTTSSSSSGPR 18 1 Q5QP82;A0A0A0MQT4 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 1 0 RT(0.157)T(0.157)S(0.539)S(0.113)S(0.034)DLTTSSSSSGPR 76.049 0.0070784 6330500 680.23 1125.7 1259 1154.5 879.39 993.8 1007.5 1210.8 1124.9 790.24 TRUE FALSE FALSE 600.4944706 1160.381483 1327.065348 1201.5855 814.5191517 974.8449208 1046.359612 1348.632578 1078.531146 785.5396173 0.764435628 1.477177544 1.689367817 1.529630681 1.036891245 1.240987595 1.332026532 1.716823121 1.372981225 1 9.617540227 -7.257069174 24.97067905 0.888761266 1.419139146 0.275657169 0.24999122 195.5367126 1117267.206 0.03628249 0.043621665 5.53E-08 7.257069174 0.53037788 IFYPEIEEVQALDDTER ddPTM_HeLa_CUDC101_4h_R1 4 IFYPEIEEVQALDDTER 17 0 H0YNW5;A0A0C4DGL3;H0YKC5;P33316;P33316-2 H0YNW5;P33316;P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 0 0 ;;; ;;; 284.24 8.91E-103 843181000 13043.2 13187.2 11911.9 10984.1 13650.1 12837.1 11865.9 12232.7 12611.5 12656 FALSE FALSE TRUE 11514.29587 13593.482 12555.89335 11432.07908 12643.15932 12592.25371 12323.57174 13625.22112 12091.64863 12580.72155 0.915233345 1.080500983 0.998026488 0.908698204 1.004962972 1.000916653 0.979560011 1.083023821 0.961125209 1 13.61892705 -1.000001035 0.952996477 0.970464665 79.28183222 0.251552491 0.047693171 1255.304333 2.036167123 0.008007723 214377.7195 0.099999762 1.000001035 78.31136755 IFYPETTDIYDRK ddPTM_HeLa_CUDC101_4h_R1 2 IFYPETTDIYDRK 13 1 P46940;A0A0J9YXZ5 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 0 ; ; 156 9.48E-05 31385000 4091.2 4005.7 4279 4271.4 4727.3 4406.5 3916.3 3541.6 4050.5 4362.5 FALSE FALSE TRUE 3611.635738 4129.110869 4510.335683 4445.606155 4378.576497 4322.453354 4067.353003 3944.761428 3883.536676 4336.551656 0.832835862 0.952164576 1.040074244 1.025147746 1.009690843 0.99674896 0.937923338 0.90965397 0.895535666 1 12.08233258 -6.998208119 24.9805913 0.91955816 0.98831113 0.294445982 0.052781863 80.80327308 1126453.878 0.011723429 0.015348322 1.00E-07 6.998208119 0.06875297 IGAEVYHNLK ddPTM_HeLa_CUDC101_4h_R1 4 IGAEVYHNLK 10 0 P06733;A0A2R8Y6G6;K7EM90;P06733-2 P06733 ENO1 Alpha-enolase;Enolase 0 0 ;;; ;;; 112.36 0.0039974 116416000 30390 21129.7 15333.6 20283.5 21332.9 19768.3 18242.7 19601.2 13669.8 15302.7 FALSE FALSE TRUE 26827.73027 21780.68101 16162.5808 21110.7488 19759.21447 19391.25261 18946.32705 21832.52138 13106.32506 15211.67886 1.763627179 1.431839392 1.062511308 1.387798743 1.298950277 1.274760846 1.245511901 1.435247324 0.861596223 1 13.89289177 TVMDGGLES(ph)DGPNMTENGLEDESRPQR ddPTM_HeLa_CUDC101_4h_R1 5 TVMDGGLESDGPNMTENGLEDESRPQR 27 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 TVMDGGLES(1)DGPNMTENGLEDESRPQR;T(0.004)VMDGGLES(0.996)DGPNMTENGLEDESRPQR;T(0.027)VMDGGLES(0.943)DGPNMT(0.029)ENGLEDES(0.001)RPQR;T(0.001)VMDGGLES(0.967)DGPNMT(0.033)ENGLEDESRPQR;TVMDGGLES(1)DGPNMTENGLEDESRPQR ;;;; 123.36 6.12E-10 89421200 5841.13 4155.79 4228.72 4354.91 4378.43 4451.66 3818.28 3748.17 4638.13 5031.44 TRUE FALSE FALSE 5156.441596 4283.824964 4457.337394 4532.522053 4055.441942 4366.752002 3965.552339 4174.846522 4446.944318 5001.512771 1.030976393 0.856505853 0.891197843 0.906230227 0.810843064 0.873086245 0.792870581 0.834716757 0.889119857 1 12.28814881 -7.257023951 24.59596398 1.014627743 0.852714596 0.490939941 0.05163932 84.04181478 468151.6177 0.00582011 0.006998212 5.53E-08 7.257023951 -0.161913146 SLGS(ph)PLLHER ddPTM_HeLa_CUDC101_4h_R1 4 SLGSPLLHER 10 0 H7C3L4;E7EQA9;Q92844;E7EV32;E7EMT6;E7ENY2;E7EVA2;E7EW82 H7C3L4 TANK TRAF family member-associated NF-kappa-B activator 1 0 S(0.002)LGS(0.998)PLLHER;S(0.004)LGS(0.996)PLLHER;S(0.046)LGS(0.954)PLLHER;S(0.068)LGS(0.932)PLLHER ;;; 99.844 0.010533 41910600 10577 8327.3 7571.9 8298.3 9508.9 8871.4 9261.9 7359.8 8075.9 9109.5 TRUE FALSE FALSE 9337.180094 8583.854243 7981.259818 8636.740542 8807.447391 8702.192826 9619.134586 8197.609883 7743.007984 9055.316289 1.031126887 0.947935331 0.881389403 0.95377569 0.972627251 0.961003741 1.062263788 0.905281452 0.855078689 1 13.14454932 -7.256980069 24.77238957 1.014698808 0.957072685 0 0.067669593 343.8086785 1909925.605 0.007615116 0.009160725 5.53E-08 7.256980069 -0.057626123 AAEVVASAMRPGPES(ph)PSTR ddPTM_HeLa_CUDC101_4h_R1 1 AAEVVASAMRPGPESPSTR 19 1 A0A1B0GV70;Q96N21-2 A0A1B0GV70 ENTHD2 AP-4 complex accessory subunit tepsin 1 0 AAEVVASAMRPGPES(0.419)PS(0.419)T(0.162)R 54.306 0.028085 14393000 1285.1 776.02 698.71 813.7 962.91 875.33 697.79 650.89 1001.1 1067.1 TRUE FALSE FALSE 1134.462526 799.9282564 736.4843761 846.8862031 891.8780477 858.6345386 724.703994 724.9846866 959.8342343 1060.752842 1.069488086 0.754113706 0.694303467 0.798382215 0.840797227 0.809457684 0.683197787 0.683462403 0.904861337 1 10.05087283 -7.256879764 24.97353615 1.03281382 0.754510832 0.71948476 0.067038274 107.3669202 588061.0796 0.010069757 0.012113278 5.54E-08 7.256879764 -0.278302989 LKNGFPHPEPDCNPSEAASEES(ph)NSEIEQEIPVEQK ddPTM_HeLa_CUDC101_4h_R1 1 LKNGFPHPEPDCNPSEAASEESNSEIEQEIPVEQK 35 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 LKNGFPHPEPDCNPS(0.002)EAAS(0.013)EES(0.492)NS(0.492)EIEQEIPVEQK 79.021 2.98E-07 15212000 2540.6 2387.1 2888.5 2884.2 3083.2 2718.4 2707.5 2677.5 2324.6 1906.4 TRUE FALSE FALSE 2242.794719 2460.643722 3044.661047 3001.830143 2855.758479 2666.551049 2811.929182 2982.295777 2228.779004 1895.060648 1.183494957 1.298451173 1.606629872 1.584028535 1.50694833 1.407105916 1.483820154 1.573720493 1.176099037 1 10.8880283 -7.256665673 1.310490788 1.063633466 1.522229763 0.838666833 0.079255393 0.10399091 0.343033794 0.016796046 0.019982421 5.54E-08 7.256665673 0.458596297 QQVEQSSAS(ph)QTGIK ddPTM_HeLa_CUDC101_4h_R1 2 QQVEQSSASQTGIK 14 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 QQVEQSS(0.001)AS(0.977)QT(0.021)GIK;QQVEQS(0.04)S(0.12)AS(0.42)QT(0.42)GIK ; 233.62 2.37E-43 9764500 4895.5 2698.5 3027.9 2827.8 2988.2 2427 3050.4 3684.9 2739.5 3650.4 TRUE FALSE FALSE 4321.656911 2781.637586 3191.597433 2943.129907 2767.766439 2380.709019 3168.05495 4104.374121 2626.57665 3628.687258 1.190969792 0.766568566 0.879546019 0.811072902 0.76274593 0.656079968 0.87305814 1.13109062 0.723836601 1 11.82523201 -7.256576671 24.82772835 1.090180181 0.831653435 0 0.169234517 252.3859673 1288618.02 0.022496006 0.027090322 5.54E-08 7.256576671 -0.258526746 IGEEQSPEDAEDGPPELLFIHGGHTAK ddPTM_HeLa_CUDC101_4h_R1 1 IGEEQSPEDAEDGPPELLFIHGGHTAK 27 0 Q09028-3;Q09028;Q09028-4;Q09028-2;H0YF10;H0YEU5;H0YCT5;H0YDK2 Q09028-3 RBBP4 Histone-binding protein RBBP4 0 0 132.39 1.39E-11 11937000 1202 1066.6 1040.7 1232 1508.5 1432.1 1126.2 1164.5 1171.7 1537.7 FALSE FALSE TRUE 1061.103382 1099.460682 1096.96339 1282.246285 1397.22096 1404.785079 1169.637911 1297.061973 1123.40203 1528.553692 0.694187838 0.719281689 0.717647928 0.838862444 0.914080394 0.91902894 0.765192559 0.848555062 0.734944435 1 10.57795151 -9.508893665 1.285913725 0.998954927 0.791662753 0 0.110662664 0.336588605 1.004132714 0.060119913 0.014830937 3.10E-10 9.508893665 -0.207292174 HIVSNDSSDS(ph)DDESHEPK ddPTM_HeLa_CUDC101_4h_R1 3 HIVSNDSSDSDDESHEPK 18 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 HIVS(0.117)NDS(0.192)S(0.257)DS(0.434)DDESHEPK;HIVSNDS(0.012)S(0.101)DS(0.887)DDESHEPK;HIVS(0.002)NDS(0.007)S(0.004)DS(0.922)DDES(0.064)HEPK ;; 138.25 5.12E-05 314573000 25174.1 15773.7 16600.9 17018.9 18726.7 17263.8 16698.4 14889.8 19987 19681.3 TRUE FALSE FALSE 22223.23016 16259.669 17498.39487 17713.0043 17345.26865 16934.52178 17342.46288 16584.79465 19163.1274 19564.23475 1.135911036 0.831091489 0.894407325 0.905376803 0.886580481 0.865585697 0.886437067 0.847709857 0.979497928 1 14.25593106 -7.256539913 24.99859672 1.064180212 0.876536671 0.725045258 0.045608876 152.0621572 775868.5883 0.00890157 0.010722611 5.54E-08 7.256539913 -0.18764354 IGEHMEEHGIK ddPTM_HeLa_CUDC101_4h_R1 5 IGEHMEEHGIK 11 0 E2QRB9;E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881-7;Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881 E2QRB9 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ;;;; ;;;; 166.66 1.97E-05 61771700 35935.9 31733.1 31659.7 30861.3 27109.3 28696.5 27555.9 30518.1 31483.7 5709.53 FALSE FALSE TRUE 31723.54828 32710.7592 33371.31915 32119.95721 25109.50095 28149.16207 28618.74029 33992.15715 30185.92856 5675.569462 5.589491679 5.763432096 5.879818646 5.659336464 4.424137722 4.959707086 5.042443844 5.989206436 5.318572659 1 12.47054944 -9.159534736 0.769381319 0.799051844 5.410246962 0.000828808 1.3972839 0.160930545 0.161158113 0.454662048 0.111107319 6.93E-10 9.159534736 4.611195118 S(ph)VS(ph)DSSVPRRDS(ph)LS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 SVSDSSVPRRDSLSK 15 2 Q2LD37-4;Q2LD37;H3BLT5;H0Y781 Q2LD37-4 KIAA1109 Uncharacterized protein KIAA1109 4 0 S(0.939)VS(0.985)DS(0.204)S(0.401)VPRRDS(0.707)LS(0.763)K 46.324 0.0033492 0 2081.6 1366.9 1377.1 1434.1 1570.4 1588 1467.9 1128.2 1692.6 1675.9 TRUE FALSE FALSE 1837.598004 1409.012569 1451.550191 1492.588797 1454.554721 1557.711546 1524.517395 1256.629728 1622.830312 1665.931672 1.103045241 0.845780528 0.871314362 0.895948388 0.873117874 0.935039277 0.915113999 0.754310485 0.974127774 1 10.70211351 -7.256447436 24.97458869 1.048660254 0.875477252 0.605319965 0.056572606 178.8728661 894897.9118 0.009613382 0.011583051 5.54E-08 7.256447436 -0.173183002 IGEHTPSALAIMENANVLAR ddPTM_HeLa_CUDC101_4h_R1 4 IGEHTPSALAIMENANVLAR 20 0 P04075;H3BQN4;J3KPS3;P04075-2;H3BPS8;H3BR04;H3BU78 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;; ;;; 157.83 9.63E-06 127369000 5851.4 4733.4 4751.8 4760.15 6185.9 5156.9 4803.3 4800.12 5568.7 5534.5 FALSE FALSE TRUE 5165.507762 4879.230444 5008.696681 4954.289492 5729.578481 5058.540724 4988.56489 5346.546258 5339.155829 5501.580548 0.938913412 0.886877944 0.910410497 0.900521123 1.04144226 0.919470447 0.906751223 0.971820045 0.970476717 1 12.42563043 -8.867831844 0.918076383 0.996840682 0.934105371 0.170128243 0.043113319 0.575315645 0.944291883 0.02105072 0.008410758 1.36E-09 8.867831844 -0.062735311 IGEK(ac)SLFTK ddPTM_HeLa_CUDC101_4h_R1 1 IGEKSLFTK 9 1 A0A3B3IU56;F5GY90;A0A1W2PNU5;F5H226;A0A3B3IU34;F5H0P4;F5H345;A0A3B3IRR1;A0A3F2YNY7;P08397-4;P08397-3;P08397-2;P08397 A0A3B3IU56 HMBS Porphobilinogen deaminase 0 1 IGEK(1)SLFTK 112.13 0.0036133 2110700 887.18 1004 654.97 758.95 717.93 555.56 724.48 523.77 849.07 593.71 FALSE TRUE FALSE 783.1861053 1034.93205 690.3796594 789.9032615 664.9697342 544.9636186 752.4234363 583.3938596 814.0709752 590.1785865 1.327032399 1.753591326 1.169780936 1.338413964 1.126726298 0.923387651 1.274908059 0.988503943 1.379363796 1 9.205007766 -4.246998384 22.55377939 1.199315129 0.988503393 0.066986864 0.224280633 1521.076461 2375433.804 0.03284819 0.828941355 5.66E-05 4.246998384 -0.210811736 IGEK(ac)TNSVEESK ddPTM_HeLa_CUDC101_4h_R1 1 IGEKTNSVEESK 12 1 Q5SZG2;Q8TAK5 Q5SZG2 GABPB2 GA-binding protein subunit beta-2 0 1 IGEK(1)TNSVEESK 138.75 0.00032186 742650 203.45 0 241.9 153.53 213.97 168 157.53 144.2 0 217.76 FALSE TRUE FALSE 179.6018994 0 254.9778457 159.791617 198.1858594 164.7956799 163.6059849 160.6151451 0 216.4647538 0.82970505 0 1.177918535 0.738187692 0.915557179 0.76130491 0.755808888 0.741992136 0 1 7.757988325 -8.130540735 1.775521682 0.955279903 0.741914594 0 0.411549327 0.533898184 3.39383685 0.061501658 0.051496226 7.40E-09 8.130540735 -0.213365309 IGEK(ac)TNSVEESKEGNER ddPTM_HeLa_CUDC101_4h_R1 2 IGEKTNSVEESKEGNER 17 2 Q5SZG2;Q8TAK5 Q5SZG2 GABPB2 GA-binding protein subunit beta-2 0 1 ; IGEK(1)TNSVEESKEGNER;IGEK(1)TNSVEESKEGNER 122.97 0.0089105 4931300 955.62 1097.9 992.24 1129.56 1236.24 833 1179.74 1306.04 1080.43 955.88 FALSE TRUE FALSE 843.6036722 1131.724998 1045.883496 1175.628339 1145.045038 817.1119129 1225.242967 1454.714314 1035.894218 950.1943832 0.887822205 1.191045767 1.100704776 1.237250356 1.205063994 0.859941847 1.289465596 1.530964969 1.090191898 1 9.892078869 -1 0.359290109 0.965362999 7.161411128 0.389614887 0.147644944 34.64943802 0.430410179 0.0427944 148.6224021 0.1 1 6.196048129 S(ph)PTGPSNSFLANMGGTVAHK ddPTM_HeLa_CUDC101_4h_R1 5 SPTGPSNSFLANMGGTVAHK 20 0 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 0 S(0.915)PT(0.069)GPS(0.014)NS(0.003)FLANMGGTVAHK;S(0.459)PT(0.459)GPS(0.067)NS(0.016)FLANMGGTVAHK;S(0.729)PT(0.192)GPS(0.052)NS(0.027)FLANMGGTVAHK;S(0.549)PT(0.204)GPS(0.105)NS(0.143)FLANMGGTVAHK;S(0.823)PT(0.165)GPS(0.012)NSFLANMGGTVAHK ;;;; 206.33 1.27E-24 493003000 11255 7310.04 7048.81 7070.95 9395.32 8894.83 8248.55 6888.85 9344.36 8716.15 TRUE FALSE FALSE 9935.705961 7535.253668 7429.88999 7359.333904 8702.245962 8725.175938 8566.699337 7673.048838 8959.181526 8664.305952 1.146739972 0.869689241 0.857528581 0.849385276 1.004378886 1.007025373 0.98873463 0.885593016 1.034033375 1 13.08086847 -7.256424097 24.9976457 1.069293876 0.926694529 0.470212715 0.066392256 311.9353062 1554777.985 0.013621742 0.016409787 5.54E-08 7.256424097 -0.142599347 ST(ph)PKEDDSSASTSQSTR ddPTM_HeLa_CUDC101_4h_R1 1 STPKEDDSSASTSQSTR 17 1 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.044)T(0.956)PKEDDSSASTSQSTR 193.41 4.58E-15 10871000 2033.1 1592.3 1477 1504.2 1717.9 1379.2 1065.3 542.09 2036.2 1777.8 TRUE FALSE FALSE 1794.7831 1641.356876 1556.851088 1565.547778 1591.17394 1352.894058 1106.388978 603.7993344 1952.266974 1767.225567 1.015593671 0.928776103 0.880957766 0.885878864 0.900379651 0.765546902 0.626059853 0.34166512 1.104707294 1 10.78727048 -4.272429528 0.639942408 0.996828227 1.01E-29 0.932443701 0.05459584 0.470395713 0.132402118 0.008315214 0.341436036 5.34E-05 4.272429528 -0.996828227 down IGFAEK(ac)VAAK ddPTM_HeLa_CUDC101_4h_R1 2 IGFAEKVAAK 10 1 P07954-2;P07954 P07954-2 FH "Fumarate hydratase, mitochondrial" 0 1 ; IGFAEK(1)VAAK;IGFAEK(1)VAAK 147.95 0.00041815 1208710 1234.84 715.42 525.94 659.89 911.87 813.69 861.09 852.81 569.5 546.33 FALSE TRUE FALSE 1090.093927 737.4612422 554.3739073 686.8031665 844.6031668 798.1702189 894.3025297 949.8904432 546.024969 543.0804049 2.007242238 1.35792276 1.020795268 1.264643615 1.555208325 1.469709111 1.646722146 1.749078838 1.005421967 1 9.085021999 -9.684600219 1.565251721 1.000971919 1.569158204 0.358269658 0.260740507 0.389120596 1.722335035 0.225420996 0.050495363 2.07E-10 9.684600219 0.568186285 DLS(ph)SIFR ddPTM_HeLa_CUDC101_4h_R1 1 DLSSIFR 7 0 Q15759 Q15759 MAPK11 Mitogen-activated protein kinase 11 1 0 DLS(0.646)S(0.354)IFR 95.815 0.026754 3532600 603.7 828.11 649.17 796.56 929.3 931.12 872.97 616.44 974.32 657.15 TRUE FALSE FALSE 532.9352011 853.6230875 684.2660938 829.0471598 860.7473904 913.3604374 906.6407453 686.6130379 934.1581172 653.2412426 0.81583214 1.306750144 1.047493712 1.269128625 1.317656226 1.398197753 1.38791106 1.051086479 1.430035424 1 9.351472069 -7.256366345 24.99088979 0.913031843 1.259809983 0 0.203505562 207.3732875 1021567.28 0.021937782 0.026432781 5.54E-08 7.256366345 0.346778141 IGFPWSEIR ddPTM_HeLa_CUDC101_4h_R1 1 IGFPWSEIR 9 0 E7EQR4;P15311;A0A2R8Y7M3;A0A2R8Y5S7;P35241-4;P35241;P35241-5;P26038 E7EQR4;A0A2R8Y7M3;P26038 EZR;RDX;MSN Ezrin;Radixin;Moesin 0 0 116.25 0.039452 9894400 4083 2539.3 1366.7 2526.8 2366 2714.6 2282.1 1872.1 1501.3 1288.5 FALSE FALSE TRUE 3604.396929 2617.532823 1440.587936 2629.853826 2191.464894 2662.823528 2370.121361 2085.212297 1439.415779 1280.835945 2.814097265 2.043612872 1.124724788 2.053232373 1.710964548 2.078973142 1.850448819 1.628008884 1.123809637 1 10.32286999 -4.26255596 8.411475126 1.854235311 1.626620321 0 0.535094662 0.547624585 593.5444735 0.09415461 0.725776729 5.46E-05 4.26255596 -0.227614991 QLT(ph)QPETHFGR ddPTM_HeLa_CUDC101_4h_R1 1 QLTQPETHFGR 11 0 B4DDD6;Q9UJU6-4;Q9UJU6-2;Q9UJU6-6;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 QLT(0.996)QPET(0.004)HFGR 98.253 0.02186 16339000 4877.4 2708.3 1617.9 2531 2894 3871.8 3169.1 2378.3 2684.4 3964.5 TRUE FALSE FALSE 4305.678566 2791.739513 1705.368568 2634.22512 2680.515386 3797.951866 3291.333249 2649.036059 2573.747896 3940.918978 1.092556987 0.708398099 0.43273373 0.668429149 0.680175208 0.963722393 0.835168971 0.672187394 0.653083179 1 11.94431637 -7.256348101 24.26926145 1.043707469 0.710102841 0.111838377 0.178284842 154.7085278 737469.2367 0.023447603 0.028236304 5.54E-08 7.256348101 -0.333604628 S(ph)PT(ph)NS(ph)TGMWKDS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SPTNSTGMWKDSPK 14 1 P37288 P37288 AVPR1A Vasopressin V1a receptor 4 0 S(0.998)PT(0.999)NS(0.971)T(0.035)GMWKDS(0.998)PK 68.413 0.022625 7865400 1449 2699.4 1526 3047.3 3795.6 3875.9 3139.8 1702.4 3062.7 341.51 TRUE FALSE FALSE 1279.150417 2782.565314 1608.500176 3171.582066 3515.60615 3801.973665 3260.903138 1896.194335 2936.45421 339.4786833 3.767984499 8.196583323 4.738147798 9.342507266 10.35589662 11.19944742 9.605619728 5.585606484 8.649892773 1 8.407177177 -7.256345978 0.68614426 1.514072724 9.450868846 0.143609261 2.901348381 0.221052678 0.221003334 0.511644405 0.611154752 5.54E-08 7.256345978 7.936796122 IGHPAPNFK ddPTM_HeLa_CUDC101_4h_R1 2 IGHPAPNFK 9 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 0 ; ; 107.66 0.010525 98359000 30265 25584 24190 27744 27228 24729 22932 24518 23464 19917.4 FALSE FALSE TRUE 26717.38258 26372.21272 25497.78457 28875.52024 25219.44469 24257.33553 23816.49492 27309.03001 22496.80399 19798.93042 1.349435652 1.332001889 1.287836465 1.458438392 1.273778136 1.225184139 1.20291826 1.37931845 1.136263602 1 14.27313487 -9.240187045 0.857829813 0.989661576 1.312122978 0.576300539 0.081023316 0.275383564 0.346066759 0.058483837 0.014265168 5.75E-10 9.240187045 0.322461402 IGIEIIK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 IGIEIIKR 8 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 ; IGIEIIK(1)R;IGIEIIK(1)R 127.56 0.0026408 6648300 4498.2 2321.7 1728.14 1859.39 4835.3 4029.2 4479.3 3602.5 3061.1 2585.1 FALSE TRUE FALSE 3970.927815 2393.228825 1821.568476 1935.223961 4478.609552 3952.349723 4652.068101 4012.594038 2934.920162 2569.72371 1.545274225 0.931317564 0.708857714 0.753086393 1.742836996 1.538044618 1.810337852 1.561488506 1.142115065 1 11.32739754 -5.734594857 24.99555179 1.159060283 1.664750699 0.577510584 0.254582702 188.9574549 175941.6499 0.047206926 0.094393681 1.84E-06 5.734594857 0.505690416 IGIIGGTGLDDPEILEGR ddPTM_HeLa_CUDC101_4h_R1 2 IGIIGGTGLDDPEILEGR 18 0 F8WES2;F2Z2F3;J3QSB7;B4DUC8;Q13126-7;Q13126-4;Q13126;Q13126-6;Q13126-5;Q13126-3;Q13126-2 F8WES2 MTAP Purine nucleoside phosphorylase;S-methyl-5-thioadenosine phosphorylase 0 0 ; ; 259.7 1.05E-69 15736700 2809.3 2646.06 2116.24 1920.26 2730.7 2428.2 2514.74 2193.42 2501.1 2485.85 FALSE FALSE TRUE 2479.998113 2727.581972 2230.650336 1998.576503 2529.261701 2381.886131 2611.734364 2443.110067 2398.003599 2471.064054 1.00361547 1.103808688 0.902708423 0.808791864 1.023551655 0.963911124 1.056927019 0.98868747 0.970433606 1 11.27091669 -6.72698236 24.99974033 1.009412768 0.958496155 0.14766711 0.071370551 333.6321487 242060.8189 0.01139972 0.016121206 1.88E-07 6.72698236 -0.050916613 IGITNHDEYSLVR ddPTM_HeLa_CUDC101_4h_R1 2 IGITNHDEYSLVR 13 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 ; ; 102.87 0.0071524 10811300 5708.4 4557.2 4114.2 4112.7 5389.5 5319.1 4372.1 4289.4 5173.9 4968.1 FALSE FALSE TRUE 5039.270005 4697.60193 4336.626097 4280.433683 4991.927322 5217.64703 4540.733362 4777.687958 4960.629652 4938.54952 1.02039475 0.951210859 0.878117366 0.866739043 1.010808397 1.056514065 0.919446761 0.967427367 1.004470975 1 12.26987166 -7.253012181 21.94515539 1.009630855 0.949323724 0.199142641 0.053497556 144.6218782 376606.6173 0.009494044 0.011504305 5.58E-08 7.253012181 -0.060307131 IGK(ac)TLPSEK ddPTM_HeLa_CUDC101_4h_R1 2 IGKTLPSEK 9 1 Q14966-3;Q14966;Q14966-5;A0A096LNS4 Q14966-3 ZNF638 Zinc finger protein 638 0 1 ; IGK(1)TLPSEK;IGK(1)TLPSEK 119.53 0.001488 5879900 2993.8 3276.1 3750.7 3348.3 3737.8 3698.6 3225.5 3548 3493.2 3882.6 FALSE TRUE FALSE 2642.871302 3377.032758 3953.474187 3484.858147 3462.069941 3628.055367 3349.908615 3951.889978 3349.208817 3859.506123 0.684769299 0.874990906 1.024347173 0.902928519 0.897024083 0.940030992 0.867963027 1.023936704 0.867781709 1 11.91420053 -6.985999117 24.85600305 0.847390479 0.93649902 0.196640755 0.085386574 399.2351449 708765.9384 0.02001685 0.026300549 1.03E-07 6.985999117 0.089108542 IGLEVDRR ddPTM_HeLa_CUDC101_4h_R1 1 IGLEVDRR 8 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 0 0 90.37 0.0026123 0 1085.4 645.55 881.14 910.15 874.51 1075.8 890.92 738.59 1055.3 737.19 FALSE FALSE TRUE 958.1710574 665.4386303 928.7770937 947.269851 809.9991396 1055.280907 925.2830828 822.6681001 1011.800087 732.8051611 1.307538631 0.908070338 1.267427064 1.292662636 1.105340386 1.440056598 1.26265907 1.122628693 1.380721836 1 9.517285854 IGLFGGAGVGK ddPTM_HeLa_CUDC101_4h_R1 2 IGLFGGAGVGK 11 0 P06576;H0YH81;F8W079 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 0 ; ; 133.12 0.0077295 6532700 7189.7 5532.4 4019 4339.9 4873.3 4510.4 4670 4741.4 3977.1 4366.9 FALSE FALSE TRUE 6346.934265 5702.846686 4236.279297 4516.899881 4513.806368 4424.371635 4850.123464 5281.141811 3813.162255 4340.925485 1.462115461 1.313739825 0.975893116 1.040538451 1.039825812 1.019223124 1.117301709 1.216593519 0.878421495 1 12.08378694 -6.763018804 24.9998968 1.231482444 1.065682559 0.011948582 0.165877713 60.39570628 955978.2257 0.0296632 0.04016001 1.73E-07 6.763018804 -0.165799885 IGLPHSIK(ac)LSR ddPTM_HeLa_CUDC101_4h_R1 2 IGLPHSIKLSR 11 1 Q14498-2;Q14498;G3XAC6;Q5QP22 Q14498-2 RBM39 RNA-binding protein 39 0 1 ; IGLPHSIK(1)LSR;IGLPHSIK(1)LSR 125.23 0.0015261 2206900 1804.78 1089.99 907.41 912.13 1343.54 1104.99 1133.62 656.15 956.5 470.76 FALSE TRUE FALSE 1593.226424 1123.5713 956.4673294 949.330604 1244.429731 1083.914157 1177.344103 730.8434638 917.0726652 467.9598986 3.404621697 2.40099911 2.043908746 2.028658026 2.65926575 2.316254363 2.515908108 1.561765155 1.959724899 1 8.870241094 IGNSYFK(ac)EEK ddPTM_HeLa_CUDC101_4h_R1 1 IGNSYFKEEK 10 1 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 1 IGNSYFK(1)EEK 152.7 2.40E-13 0 648.45 412.19 275.84 248.65 986.99 635.09 569.58 568.5 582.87 541.4 FALSE TRUE FALSE 572.439674 424.8890853 290.7527448 258.7910218 914.1817141 622.9767164 591.5488914 633.215742 558.8438519 538.1797287 1.063658929 0.78949292 0.54025213 0.480863563 1.69865505 1.157562582 1.099166059 1.176587873 1.038396324 1 9.071944241 -5.759627009 24.99999929 0.935571512 1.260902989 0.399634335 0.255162822 54.71857376 754770.302 0.040880173 0.078528257 1.74E-06 5.759627009 0.325331477 ISFPGSSES(ph)PLSSK ddPTM_HeLa_CUDC101_4h_R1 1 ISFPGSSESPLSSK 14 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 ISFPGS(0.038)S(0.024)ES(0.931)PLS(0.007)SK 233.28 2.46E-43 31840000 2830.5 1648.7 1809.1 1873.3 1788.2 1768.8 1923.5 1593.7 2226.6 2141.1 TRUE FALSE FALSE 2498.713081 1699.494493 1906.905418 1949.701271 1656.288049 1735.063087 1997.690039 1775.120366 2134.818606 2128.364642 1.174006104 0.798497804 0.895948646 0.916056033 0.778197502 0.815209505 0.938603283 0.83403019 1.003032358 1 11.05552963 -7.256214636 24.99978142 1.08216955 0.856678607 0.658486434 0.067085688 198.5574237 950074.3412 0.013188042 0.015895094 5.54E-08 7.256214636 -0.225490943 RGPEVTSQGVQT(ph)SSPACKQEK ddPTM_HeLa_CUDC101_4h_R1 1 RGPEVTSQGVQTSSPACKQEK 21 2 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHH4;A0A5F9ZHX3;F8W0B5;F8WB05;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 RGPEVTSQGVQT(0.661)S(0.169)S(0.169)PACKQEK 60.09 0.016055 8676500 2342.7 2392.5 2283.9 2644.4 2629.7 2262 1946.4 2268.9 2500.1 2277.9 TRUE FALSE FALSE 2068.092257 2466.210089 2407.374542 2752.250062 2435.71227 2218.856119 2021.4733 2527.182405 2397.04482 2264.350949 0.913326734 1.089146579 1.063163174 1.215469741 1.075677898 0.979908225 0.892738513 1.116073639 1.058601283 1 11.14488186 -7.256060273 24.84322349 0.959070958 1.058595803 0.089851585 0.087483444 471.3342185 2176844.609 0.014860311 0.017921226 5.55E-08 7.256060273 0.099524845 S(ph)PQTLAPVGEDAMK ddPTM_HeLa_CUDC101_4h_R1 4 SPQTLAPVGEDAMK 14 0 Q92797 Q92797 SYMPK Symplekin 1 0 S(0.988)PQT(0.012)LAPVGEDAMK;S(0.979)PQT(0.021)LAPVGEDAMK;S(1)PQTLAPVGEDAMK;S(0.995)PQT(0.005)LAPVGEDAMK ;;; 112.03 0.0030831 76409000 10453.9 6513.7 6812.7 6808.1 7381 7817 7101.6 4846.1 7732.5 8302.4 TRUE FALSE FALSE 9228.509689 6714.379376 7181.015169 7085.763745 6836.518335 7667.903749 7375.511091 5397.760435 7413.763077 8253.016956 1.118198319 0.813566652 0.87010789 0.858566483 0.828365963 0.929103113 0.893674535 0.654034817 0.898309445 1 13.01070589 -7.256034906 24.98194622 1.055815874 0.843156778 0.398766169 0.089207267 211.5099117 977695.644 0.013034216 0.015720478 5.55E-08 7.256034906 -0.212659096 IGVDHVAR ddPTM_HeLa_CUDC101_4h_R1 2 IGVDHVAR 8 0 H7C3T0;E7EM64;Q7L5N1 H7C3T0 COPS6 COP9 signalosome complex subunit 6 0 0 ; ; 105.14 0.013075 8240500 5667.5 4940 5468.9 5263.9 6265.2 5553 5185.4 5399.1 5415.2 4814.4 FALSE FALSE TRUE 5003.164241 5092.195545 5764.565277 5478.584595 5803.028678 5447.085777 5385.402615 6013.71172 5191.983164 4785.763735 1.045426502 1.064029866 1.204523582 1.144767042 1.212560628 1.138185268 1.125296382 1.256583495 1.084880795 1 12.22453346 -6.911298455 3.422628705 1.022243938 1.175818192 0.677591685 0.043645609 0.08053774 1.883178673 0.006386667 0.008500758 1.23E-07 6.911298455 0.153574254 NLTEQNSYSNIPHEGKHT(ph)PLYER ddPTM_HeLa_CUDC101_4h_R1 1 NLTEQNSYSNIPHEGKHTPLYER 23 1 Q9NZB2-4;Q9NZB2;Q9NZB2-6;A0A0C4DH52;Q9NZB2-2;Q9NZB2-5;Q5T035 Q9NZB2-4 FAM120A;C9orf129 Constitutive coactivator of PPAR-gamma-like protein 1;Putative uncharacterized protein C9orf129 1 0 NLTEQNSYSNIPHEGKHT(0.837)PLY(0.163)ER 86.357 0.00020578 9209200 1604.6 973.34 1010 828.88 1825.9 1370.9 831.76 786.57 1269.1 1166 TRUE FALSE FALSE 1416.51122 1003.327452 1064.603655 862.6853091 1691.206995 1344.752367 863.8412618 876.1099494 1216.787161 1159.06458 1.222115872 0.865635504 0.918502449 0.744294428 1.459113688 1.160204867 0.745291744 0.755876734 1.049801005 1 10.17874524 -7.255983252 24.80870186 1.10488805 0.960544828 0.080083414 0.21493627 842.9086671 3832658.447 0.038356091 0.046262929 5.55E-08 7.255983252 -0.144343222 IHDENLR ddPTM_HeLa_CUDC101_4h_R1 2 IHDENLR 7 0 O95232;D6RDI2;J3KPP4 O95232 LUC7L3 Luc7-like protein 3 0 0 ; ; 194.25 2.37E-13 5773000 1639.64 932.22 1727.49 1794.91 1353.48 1171.18 1431.34 930.81 1559.42 1807.51 FALSE FALSE TRUE 1447.443885 960.9405932 1820.883335 1868.114188 1253.636477 1148.841693 1486.547263 1036.769648 1495.140048 1796.75885 0.805586061 0.534818901 1.013426668 1.039713364 0.697721053 0.639396707 0.827349348 0.577022146 0.832131728 1 10.81118108 -13.52287875 0.077043444 1.792086796 0.508194506 0.131631343 0.16167536 202.3751853 1.201165638 28.05064096 3.355893667 3.00E-14 13.52287875 -1.283892291 IHEDIFDIIDR ddPTM_HeLa_CUDC101_4h_R1 2 IHEDIFDIIDR 11 0 K7EKE5;K7EIS0;Q9NRH3;P23258 K7EKE5 TUBG1;TUBG2 Tubulin gamma chain;Tubulin gamma-2 chain;Tubulin gamma-1 chain 0 0 ; ; 153.54 0.00035175 23903700 8628.6 6741.9 6817.8 6172.7 6918.9 5945.4 5891 4714.4 6954.1 6601.2 FALSE FALSE TRUE 7617.168588 6949.609948 7186.390891 6424.449387 6408.506531 5832.001401 6118.217843 5251.06824 6667.449055 6561.935769 1.160811208 1.05907924 1.095163248 0.979047893 0.976618296 0.888762342 0.932380026 0.800231582 1.016079597 1 12.67990576 -5.541798331 1.012211441 1.077997902 0.85491149 0.707820752 0.052868015 0.286726282 0.53850148 0.010946521 0.04217358 2.87E-06 5.541798331 -0.223086413 IHFPLATYAPVISAEK ddPTM_HeLa_CUDC101_4h_R1 3 IHFPLATYAPVISAEK 16 0 Q9BQE3;F5H5D3;A0A1W2PQM2;P0DPH8;P0DPH7;F8VVB9;P0DPH7-2;Q6PEY2;C9JDS9;P68363;P68363-2;Q71U36-2;Q71U36;P68366-2;P68366 Q9BQE3;P68363;P68366-2 TUBA1C;TUBA1B;TUBA3E;TUBA4A;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain 0 0 ;; ;; 112.96 0.0012159 42585910 11615.37 9745.02 9288.1 10736.12 11025.73 10532.41 9773.38 10235.74 10880.79 11022.61 FALSE FALSE TRUE 10253.83394 10045.25252 9790.242781 11173.98538 10212.38386 10331.52183 10150.34254 11400.93527 10432.27923 10957.04703 0.93582093 0.916784649 0.893511067 1.01979898 0.93203797 0.942911151 0.926375739 1.040511667 0.952106823 1 13.41957142 -9.306397847 1.086681544 0.999346073 0.947937394 0.001308734 0.045397883 0.688723419 1.483764043 0.026101336 0.007325878 4.94E-10 9.306397847 -0.051408679 QVLDYPS(ph)PDVECAK ddPTM_HeLa_CUDC101_4h_R1 1 QVLDYPSPDVECAK 14 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 QVLDYPS(1)PDVECAK 128.74 0.00093453 10065000 1978.3 1576 1683.8 1747.2 1745.1 1867 1391 516.18 1829.1 1204.5 TRUE FALSE FALSE 1746.406673 1624.554692 1774.831321 1818.458368 1616.36745 1831.390086 1444.651336 574.9398447 1753.703724 1197.33558 1.458577446 1.356808165 1.482317364 1.518754139 1.349970281 1.529554551 1.206555087 0.480182711 1.464671853 1 10.22561184 -4.272252016 4.269469824 1.299710047 0.425041918 0.705151465 0.168266755 0.116951369 4.890083424 0.030836598 0.304799919 5.34E-05 4.272252016 -0.874668129 down IHGVGFK ddPTM_HeLa_CUDC101_4h_R1 2 IHGVGFK 7 0 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899-2;B8ZZK4 P62899 RPL31 60S ribosomal protein L31 0 0 ; ; 95.957 0.024585 21474000 23197 19403.3 19258.5 19660.4 19829.6 18934 18518.5 18017.1 19363 15752.8 FALSE FALSE TRUE 20477.88282 20001.09267 20299.67276 20462.23609 18366.80991 18572.8655 19232.76475 20068.09384 18564.84894 15659.10165 1.307730372 1.277282256 1.296349767 1.306731162 1.172915939 1.186074777 1.228216355 1.281560992 1.185562835 1 13.93471383 -9.303298563 0.963068238 0.995707981 1.257336305 0.365047907 0.071697998 0.208638527 0.337802956 0.038551606 0.009661532 4.97E-10 9.303298563 0.261628323 IHGVGFK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 IHGVGFKK 8 1 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899-2;B8ZZK4 P62899 RPL31 60S ribosomal protein L31 0 1 ; IHGVGFK(1)K;IHGVGFK(1)K 83.753 0.031142 4494800 7094.2 7539.2 6455 6548.3 7259.6 7516.8 5646.3 4947.8 6685.3 4706.4 FALSE TRUE FALSE 6262.62863 7771.473816 6803.976825 6815.367978 6724.073771 7373.429564 5864.079682 5511.037552 6409.729104 4678.406123 1.338624409 1.661137065 1.454336508 1.456771344 1.437257389 1.576055898 1.253435364 1.177973311 1.370066842 1 12.19180139 -8.591473536 0.84513424 1.026275699 1.428749789 0.118134642 0.171793443 0.301073503 0.437387656 0.062689948 0.03028336 2.56E-09 8.591473536 0.40247409 IHLDEK ddPTM_HeLa_CUDC101_4h_R1 2 IHLDEK 6 0 P37837 P37837 TALDO1 Transaldolase 0 0 ; ; 127.66 0.00017405 3189000 8803.1 4028.2 10474 11390 6526.2 6198.9 7012.6 3634 10517.8 12725 FALSE FALSE TRUE 7771.213963 4152.304067 11040.25612 11854.53343 6044.775228 6080.666311 7283.078331 4047.679871 10084.25183 12649.31113 0.61435867 0.328263257 0.872795048 0.937168302 0.477873867 0.480711261 0.575768771 0.319992119 0.797217471 1 13.6267712 -13.52287875 0.151032726 2.580554929 0.434490377 0.307552985 0.195656615 49.05903436 0.504020922 22.97641364 0.449188537 3.00E-14 13.52287875 -2.146064552 DGMDNQGGYGS(ph)VGR ddPTM_HeLa_CUDC101_4h_R1 2 DGMDNQGGYGSVGR 14 0 P31942;P31942-4;P31942-3;P31942-2 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 1 0 DGMDNQGGYGS(1)VGR;DGMDNQGGYGS(1)VGR ; 180.56 1.12E-08 32811000 5027 3786.9 3950.1 3971.7 3790.1 4097.5 3730.5 3785.9 4175.7 4236.3 TRUE FALSE FALSE 4437.74268 3903.5699 4163.654354 4133.683093 3510.511874 4019.347014 3874.386635 4216.871553 4003.575879 4211.102299 1.053819728 0.926971045 0.988732654 0.981615453 0.833632532 0.954464349 0.920040968 1.00137001 0.950719217 1 12.03998221 -7.255914876 24.99465539 1.025414872 0.94226796 0.163391636 0.0518757 337.5254183 1527074.378 0.007912422 0.009547747 5.55E-08 7.255914876 -0.083146912 NTETQPTS(ph)PQLGTK ddPTM_HeLa_CUDC101_4h_R1 1 NTETQPTSPQLGTK 14 0 O95696-2 O95696-2 BRD1 Bromodomain-containing protein 1 1 0 NTETQPT(0.236)S(0.763)PQLGT(0.002)K 115.09 0.0023422 9986300 2862.9 2863.6 3160.9 2806.4 3301.5 3071 2850 1662.1 2511.1 2714.5 TRUE FALSE FALSE 2527.315202 2951.824122 3331.787815 2920.857122 3057.954923 3012.425792 2959.925455 1851.306746 2407.591395 2698.354033 0.936613643 1.093935075 1.234748211 1.08245882 1.133266756 1.116393829 1.096937399 0.686087416 0.892244444 1 11.39786393 -7.255872623 23.9672066 0.970067553 1.076741832 0.12383482 0.138257711 419.9619217 1808110.564 0.022120626 0.02666741 5.55E-08 7.255872623 0.106674278 MGPSGGEGMEPERRDS(ph)QDGSSYR ddPTM_HeLa_CUDC101_4h_R1 2 MGPSGGEGMEPERRDSQDGSSYR 23 2 C9J9W2;Q14847;Q14847-2;Q14847-3 C9J9W2 LASP1 LIM and SH3 domain protein 1 1 0 MGPSGGEGMEPERRDS(0.785)QDGS(0.099)S(0.099)Y(0.017)R;MGPSGGEGMEPERRDS(0.893)QDGS(0.047)S(0.047)Y(0.012)R ; 59.537 0.0045414 191956000 2941.5 2776.5 2709.9 2763.7 2871.5 2741.4 2871.8 2499.68 3330.2 2747.7 TRUE FALSE FALSE 2596.701829 2862.040674 2856.405391 2876.415632 2659.675166 2689.112362 2982.566288 2784.233467 3192.927746 2731.356558 0.950700421 1.047845865 1.045782683 1.053108802 0.973756121 0.984533621 1.091972514 1.019359211 1.168989723 1 11.41540194 -7.255670633 24.97849279 0.976719643 1.030701162 0 0.069618427 416.1497985 1801914.172 0.00617257 0.007455851 5.55E-08 7.255670633 0.053981519 IALESEGRPEEQMESDNCS(ph)GGDDDWTHLSSK ddPTM_HeLa_CUDC101_4h_R1 1 IALESEGRPEEQMESDNCSGGDDDWTHLSSK 31 1 Q13501;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 IALESEGRPEEQMES(0.074)DNCS(0.874)GGDDDWT(0.047)HLS(0.003)S(0.001)K 51.16 0.0076563 19324000 2360.5 1615.1 1519.4 1324.6 2414.4 1629 1594.2 1895.5 1786 1881.3 TRUE FALSE FALSE 2083.805768 1664.859317 1601.54336 1378.622913 2236.294522 1597.929539 1655.688828 2111.276058 1712.380324 1870.109944 1.114269124 0.890246759 0.856389949 0.737188163 1.195809118 0.854457538 0.885343043 1.128958255 0.915657568 1 10.86890737 -7.255514981 24.75215809 1.053960419 0.929783318 0.029060289 0.137043229 561.4717045 2345831.092 0.021351404 0.025772713 5.55E-08 7.255514981 -0.124177101 S(ph)AEVDDGAAEKETLPEFGEGK ddPTM_HeLa_CUDC101_4h_R1 2 SAEVDDGAAEKETLPEFGEGK 21 1 H7C5W6;F5H619;Q86XA9-2;Q86XA9 H7C5W6 HEATR5A HEAT repeat-containing protein 5A 1 0 S(1)AEVDDGAAEKETLPEFGEGK;S(1)AEVDDGAAEKETLPEFGEGK ; 98.019 0.00016939 29752000 9514.6 6780.7 6320 7449.4 7861.2 7811.5 6679 6689.5 7823 7702.3 TRUE FALSE FALSE 8399.313011 6989.60533 6661.678317 7753.218731 7281.294938 7662.508652 6936.611267 7451.00564 7500.532629 7656.486377 1.097019259 0.912899858 0.870069897 1.01263404 0.950996917 1.000786559 0.905978399 0.973162528 0.97963116 1 12.90246676 -7.255341383 24.99840771 1.04581465 0.946925015 0.314871699 0.05076015 346.7988975 1421685.514 0.008865858 0.010708588 5.55E-08 7.255341383 -0.098889635 IHQLEDLEATFADLCDGDDEETVQR ddPTM_HeLa_CUDC101_4h_R1 1 IHQLEDLEATFADLCDGDDEETVQR 25 0 Q49AR2;Q49AR2-2 Q49AR2 C5orf22 UPF0489 protein C5orf22 0 0 171.08 3.63E-13 3835700 912.29 974.93 903.67 927.58 863.18 936.08 608.35 848.14 1039.2 690.15 FALSE FALSE TRUE 805.3527491 1004.966438 952.5251337 965.4107217 799.5049311 918.2258336 631.8142633 944.6888293 996.3637361 686.0449571 1.173906667 1.464869652 1.388429612 1.407212037 1.16538271 1.338433909 0.920951691 1.377007176 1.452330093 1 9.42215931 -8.071419245 1.257893762 1.039812971 1.28115751 0 0.199346663 0.341771204 1.120160003 0.03867325 0.031350667 8.48E-09 8.071419245 0.241344539 NHVTGASS(ph)SS(ph)S(ph)SST(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 NHVTGASSSSSSSTK 15 0 O75197 O75197 LRP5 Low-density lipoprotein receptor-related protein 5 4 0 NHVTGAS(0.001)S(0.566)S(0.566)S(0.633)S(0.623)S(0.314)S(0.314)T(0.983)K 56.569 0.0030889 0 1657.3 1898.6 1991 1748.6 1676.8 2074.5 1579.4 1902.7 1919.6 1718 TRUE FALSE FALSE 1463.033806 1957.093616 2098.639482 1819.915466 1553.105805 2034.932369 1640.317987 2119.295677 1840.473276 1707.78126 0.856686884 1.145986118 1.22886902 1.065660755 0.909429001 1.191564995 0.960496538 1.24096436 1.077698485 1 10.73790748 -7.255326162 24.97417054 0.932324362 1.099420489 0.170330292 0.116370776 416.9226613 1703243.81 0.018314435 0.022124004 5.55E-08 7.255326162 0.167096128 YQEQGGEASPQRT(ph)WEQQQEVVSR ddPTM_HeLa_CUDC101_4h_R1 1 YQEQGGEASPQRTWEQQQEVVSR 23 1 H0Y5J4;Q9UJU6-5;Q9UJU6 H0Y5J4 DBNL Drebrin-like protein 1 0 YQEQGGEAS(0.032)PQRT(0.968)WEQQQEVVSR 84.025 0.00048693 28725000 953.59 1091.1 994.14 924.42 1429 1288.8 946.98 983.18 1064.3 940.19 TRUE FALSE FALSE 841.8116257 1124.715498 1047.886216 962.1218433 1323.585517 1264.218287 983.5053358 1095.101237 1020.429104 934.5977081 0.900720833 1.203422059 1.121216333 1.029450249 1.41620882 1.352687126 1.052330139 1.171735419 1.091837798 1 9.868201689 -7.255133212 24.25839734 0.95311817 1.192809361 0.327393148 0.123189961 221.9155732 853658.8518 0.020266124 0.024483998 5.56E-08 7.255133212 0.239691192 GS(ph)GS(ph)EQEGEDEEGGER ddPTM_HeLa_CUDC101_4h_R1 1 GSGSEQEGEDEEGGER 16 0 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 2 0 GS(1)GS(1)EQEGEDEEGGER 122.46 0.0051756 4204800 2800 2191.4 2145.8 2218.7 2134.4 2444.7 2278.9 2024.1 2361.5 2424.1 TRUE FALSE FALSE 2471.788245 2258.914437 2261.808439 2309.188176 1976.949564 2398.071421 2366.797936 2254.515362 2264.15797 2409.681345 1.025773905 0.937432844 0.938633833 0.958296075 0.8204195 0.995181967 0.982203701 0.935607261 0.939608872 1 11.23462666 -7.255106762 23.74332921 1.012171011 0.938386942 0.125800358 0.050065367 198.9375932 745889.7363 0.007371542 0.008908842 5.56E-08 7.255106762 -0.073784069 IHTDFEK ddPTM_HeLa_CUDC101_4h_R1 2 IHTDFEK 7 0 J3KQ32;Q9NTK5;Q9NTK5-2 J3KQ32 OLA1 Obg-like ATPase 1 0 0 ; ; 152.63 0.0062299 19335100 11953.1 10171.2 10768.5 10492.4 11183.8 10141.6 9736 9928.9 11081.6 10187.6 FALSE FALSE TRUE 10551.97574 10484.56262 11350.67768 10920.32542 10358.79336 9948.165877 10111.52078 11059.16584 10624.81176 10127.0037 1.041964242 1.035307473 1.120832777 1.07833726 1.022888276 0.9823405 0.998471125 1.092047181 1.0491565 1 13.30591976 -4.242329495 23.32281101 1.028493249 1.092047325 0.122934482 0.039421531 2362.170687 2882815.26 0.005968125 0.246623721 5.72E-05 4.242329495 0.063554076 IHVFYIDYGNR ddPTM_HeLa_CUDC101_4h_R1 4 IHVFYIDYGNR 11 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 0 ;;; ;;; 119.53 0.0012809 39780600 17839.9 14237 10940.64 14222.4 13011.3 14500.1 12990.7 12355.5 11430.45 8863.32 FALSE FALSE TRUE 15748.73397 14675.62509 11532.12409 14802.45095 12051.48232 14223.53475 13491.75565 13762.00018 10959.28201 8810.600578 1.787475647 1.665678175 1.308891941 1.680072864 1.367838913 1.614366084 1.531309419 1.561982075 1.243874571 1 13.10502465 -9.439618574 1.150067596 0.997426507 1.578515033 0.559172931 0.152031031 0.218855769 0.514138922 0.101849955 0.024990871 3.63E-10 9.439618574 0.581088525 NVGMPVAHMES(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 NVGMPVAHMESPER 14 0 Q9UPS8 Q9UPS8 ANKRD26 Ankyrin repeat domain-containing protein 26 1 0 NVGMPVAHMES(1)PER;NVGMPVAHMES(1)PER ; 98.165 0.0055836 15955200 4826 5448 4882.5 4941.8 5811.8 4915.1 4426.8 4852.9 5183.1 5321.9 TRUE FALSE FALSE 4260.303596 5615.846423 5146.462719 5143.347964 5383.075093 4821.352657 4597.543159 5405.33452 4969.450424 5290.245102 0.805313084 1.061547492 0.972821225 0.972232451 1.017547389 0.911366593 0.86906052 1.021755026 0.939361094 1 12.36911885 -7.255035189 24.95077999 0.908064512 0.970077697 0.134779949 0.068515508 916.9569972 3572473.567 0.01459163 0.017650833 5.56E-08 7.255035189 0.062013185 IIAPPERK ddPTM_HeLa_CUDC101_4h_R1 1 IIAPPERK 8 1 P60709;P63267-2;A0A2R8YFE2;Q562R1;P63267;P68133;P68032;P62736;A6NL76;P63261 P60709;P63267;P63261 ACTB;ACTG2;ACTBL2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 101.33 0.018432 119360000 2750.7 2694.2 3454 2739.9 3131.7 2514.1 2936.8 3540.4 3193.6 2720.2 FALSE FALSE TRUE 2428.267116 2777.205109 3640.733688 2851.644965 2900.68073 2466.147731 3050.07336 3943.424825 3061.958456 2704.020129 0.898021094 1.027065249 1.346415157 1.054594577 1.072728971 0.912030093 1.127977313 1.458356313 1.132372656 1 11.40089018 -6.992154283 24.85830811 0.952406437 1.144046621 0.142401811 0.15637523 174.061003 551490.2132 0.02368342 0.03109443 1.02E-07 6.992154283 0.191640184 IIDDSEITKEDDALWPPPDR ddPTM_HeLa_CUDC101_4h_R1 3 IIDDSEITKEDDALWPPPDR 20 1 F5H6N1;P61326;Q96A72;F5H3U9;F5H6P7 F5H6N1 MAGOHB;MAGOH Protein mago nashi homolog;Protein mago nashi homolog 2 0 0 ;; ;; 114.99 9.53E-05 49516700 3743.25 3185.38 3119.45 2998.92 3804.02 3459.32 3208.35 3042.63 3615.23 3878.17 FALSE FALSE TRUE 3304.471909 3283.517782 3288.096903 3121.22892 3523.405023 3393.339235 3332.097134 3388.9907 3466.208689 3855.102472 0.857168372 0.851732945 0.852920753 0.809635786 0.91395885 0.880220243 0.864334258 0.879092248 0.899122323 1 11.91255349 -9.146059519 0.788378068 1.00486162 0.862862642 0.327701038 0.039462104 0.239665291 0.255958184 0.020978401 0.005337239 7.14E-10 9.146059519 -0.141998978 IIEEDDAYDFSTDYV ddPTM_HeLa_CUDC101_4h_R1 2 IIEEDDAYDFSTDYV 15 0 Q9BVP2-2;Q9BVP2 Q9BVP2-2 GNL3 Guanine nucleotide-binding protein-like 3 0 0 ; ; 125.97 0.0043393 10747900 7015.3 6339.7 5686.4 5675.9 6429 6652.6 6350.1 5673.2 6661.9 6387 FALSE FALSE TRUE 6192.977169 6535.018643 5993.823984 5907.387735 5954.745478 6525.712739 6595.025484 6319.014156 6387.293662 6349.00984 0.975424094 1.029297293 0.944056496 0.930442366 0.937901441 1.027831568 1.038748663 0.995275534 1.006029889 1 12.6323159 -5.212430725 24.99445701 0.980510033 1.022431626 0.292170531 0.031813786 424.4442003 216466.3582 0.004683657 0.011940998 6.13E-06 5.212430725 0.041921592 IIEGLQDLDDDVR ddPTM_HeLa_CUDC101_4h_R1 2 IIEGLQDLDDDVR 13 0 A0A0A0MTH9;O14981 A0A0A0MTH9 BTAF1 TATA-binding protein-associated factor 172 0 0 ; ; 228.93 1.41E-32 5275100 2007.26 1790.79 1452.65 1702.76 1860.84 1893.48 1865.11 1350.98 1831.61 1988.67 FALSE FALSE TRUE 1771.972026 1845.962117 1531.184653 1772.205913 1723.569541 1857.365024 1937.047917 1504.770102 1756.110261 1976.841302 0.89636534 0.933793783 0.774561241 0.896483653 0.87188058 0.939562028 0.979870218 0.761199243 0.888341547 1 10.94898134 -8.908654106 0.632883376 1.005657788 0.88277625 0.022115628 0.073139334 0.805341389 0.570979307 0.052390974 0.014588341 1.23E-09 8.908654106 -0.122881537 IIETEDQIDK ddPTM_HeLa_CUDC101_4h_R1 2 IIETEDQIDK 10 0 Q96PC5;G3V599;Q96PC5-2 Q96PC5 MIA2 Melanoma inhibitory activity protein 2 0 0 ; ; 119.29 0.027786 18106500 5354.6 4412.7 4198 3807 4435.9 4476.5 4004.4 3635.3 4475 4804.8 FALSE FALSE TRUE 4726.941905 4548.650057 4424.956578 3962.265915 4108.672495 4391.118221 4158.851049 4049.127858 4290.538606 4776.220836 0.989682443 0.95235338 0.926455608 0.829581808 0.860235034 0.919370852 0.870740946 0.847768141 0.898312443 1 12.22165383 -6.748719958 1.783624767 0.995092851 0.868853087 0.515993727 0.038793301 0.089100278 0.578823651 0.004105977 0.005970419 1.78E-07 6.748719958 -0.126239764 IIFVVGGPGSGK ddPTM_HeLa_CUDC101_4h_R1 1 IIFVVGGPGSGK 12 0 P00568;Q5T9B7 P00568 AK1 Adenylate kinase isoenzyme 1 0 0 161.17 0.00016085 3741200 708.65 627.88 870.68 745.09 697.6 571.68 665.68 851.46 730.8 787.21 FALSE FALSE TRUE 625.5831212 647.2242386 917.7515945 775.4779908 646.1394378 560.7761565 691.3555006 948.3867647 700.6761147 782.5276399 0.799439009 0.827094412 1.172804062 0.990991182 0.825708135 0.716621532 0.883490199 1.211953056 0.895401107 1 9.611997901 -4.2591797 24.14661783 0.902887498 1.211953227 0.370451643 0.121481768 119.3769237 1275501.682 0.018521451 0.164655352 5.51E-05 4.2591797 0.309065729 SAMPFTAS(ph)PASSTTAR ddPTM_HeLa_CUDC101_4h_R1 3 SAMPFTASPASSTTAR 16 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 S(0.04)AMPFT(0.115)AS(0.278)PAS(0.05)S(0.255)T(0.255)T(0.009)AR;SAMPFT(0.01)AS(0.399)PAS(0.052)S(0.399)T(0.07)T(0.07)AR;SAMPFT(0.049)AS(0.855)PAS(0.006)S(0.069)T(0.021)TAR ;; 163.9 6.84E-05 56278000 5389.3 4869.7 4262.7 4872 5209.2 5198.4 4280.9 2193.68 6060.5 4982.6 TRUE FALSE FALSE 4757.574424 5019.729685 4493.154456 5070.701219 4824.927694 5099.249181 4446.015747 2443.399664 5810.683625 4952.963274 0.960551121 1.013480094 0.907164905 1.023771213 0.974149701 1.029535028 0.897647631 0.493320772 1.17317317 1 12.27407621 -4.272025079 3.111821966 0.982953059 0.424383133 0.83009197 0.069202316 0.048031448 0.711444332 0.004418478 0.06460161 5.35E-05 4.272025079 -0.558569927 down ES(ph)HTPVSIQEEIVGDFK ddPTM_HeLa_CUDC101_4h_R1 2 ESHTPVSIQEEIVGDFK 17 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;A0A0A0MR81;F5H176 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 ES(0.651)HT(0.349)PVSIQEEIVGDFK;ES(0.804)HT(0.196)PVSIQEEIVGDFK ; 163.79 1.59E-05 14173100 11420.2 8803.2 9157.9 9113.5 8937.2 10172.6 9679.2 7432.8 9423.6 9547.8 TRUE FALSE FALSE 10081.54147 9074.416158 9653.003775 9485.187922 8277.920561 9978.574604 10052.52999 8278.919908 9035.155219 9491.009261 1.06222017 0.956106554 1.017068207 0.999386647 0.87218549 1.051371285 1.059163437 0.872290784 0.951969909 1 13.21234579 -7.255030674 24.64991204 1.029381747 0.980072781 0 0.066966966 689.9665604 2653827.281 0.010306283 0.012472609 5.56E-08 7.255030674 -0.049308966 GGGGSSSSSSELS(ph)TPEKPPHQR ddPTM_HeLa_CUDC101_4h_R1 1 GGGGSSSSSSELSTPEKPPHQR 22 1 A0A2R8YFV7;A0A2R8Y5N2;A0A2R8Y5S3;Q92574-2;Q92574;A0A2R8Y6S1 A0A2R8YFV7 TSC1 Hamartin 1 0 GGGGSSSS(0.001)S(0.009)S(0.006)ELS(0.565)T(0.419)PEKPPHQR 99.371 7.88E-05 6078300 2694.8 2126.1 2069.8 2048.2 2684.4 2387.9 2153.4 1893.2 2370.1 2265.6 TRUE FALSE FALSE 2378.919629 2191.602621 2181.699649 2131.734449 2486.37716 2342.354786 2236.457359 2108.714235 2272.403475 2252.12411 1.056300413 0.97312693 0.96872976 0.946543949 1.104014272 1.040064699 0.993043567 0.936322393 1.00900455 1 11.13707062 -7.255016838 24.67306867 1.026586306 0.997612807 0.058548186 0.047792807 965.8285859 3710374.686 0.00860039 0.010376158 5.56E-08 7.255016838 -0.028973499 IIHDFPQFYPLGIVQHD ddPTM_HeLa_CUDC101_4h_R1 2 IIHDFPQFYPLGIVQHD 17 0 B5MC59;P35244 B5MC59 RPA3 Replication protein A 14 kDa subunit 0 0 ; ; 103.01 0.0021558 13040100 3343.2 2973.9 3173.6 3110.4 3371.1 2716.7 2977.8 2991.4 3283.8 3318 FALSE FALSE TRUE 2951.315164 3065.522334 3345.174416 3237.255556 3122.420669 2664.883474 3092.654743 3331.928884 3148.440374 3298.264388 0.894808547 0.929434992 1.01422264 0.981502747 0.946685984 0.80796539 0.93766126 1.010206731 0.954574893 1 11.68749133 -5.4988427 24.93983128 0.955077634 0.913317741 0.098023599 0.056199465 1536.988353 1594780.074 0.009051946 0.020133752 3.17E-06 5.4988427 -0.041759893 IIHEDGYSEEECR ddPTM_HeLa_CUDC101_4h_R1 1 IIHEDGYSEEECR 13 0 P04899-6;P04899-3;P04899-5;P04899-2;P04899;P04899-4 P04899-6 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 0 0 113.54 0.00021732 0 2622.7 2146.9 2318.7 2599.1 2478.1 2525.5 2462.6 2059.3 2631.1 1420 FALSE FALSE TRUE 2315.271082 2213.043444 2444.055936 2705.102532 2295.2955 2477.330295 2557.583307 2293.722388 2522.644944 1411.553777 1.640228746 1.567806683 1.731464983 1.916400619 1.626077262 1.755037843 1.81189222 1.624962807 1.787140515 1 10.46306838 -9.097164206 0.460106961 0.848898099 1.757492325 0 0.260847804 0.343346448 0.107056483 0.144392263 0.026713226 8.00E-10 9.097164206 0.908594226 MS(ph)SPEDDSDTKR ddPTM_HeLa_CUDC101_4h_R1 2 MSSPEDDSDTKR 12 1 Q15424-2;Q15424;Q15424-4;Q15424-3 Q15424-2 SAFB Scaffold attachment factor B1 1 0 MS(0.57)S(0.428)PEDDSDT(0.002)KR;MS(0.778)S(0.222)PEDDSDTKR ; 155.66 0.00010691 78722000 8778.9 8549.7 8601.4 8484.1 9595.8 8019.1 8682.9 7574.4 9272.6 8246.6 TRUE FALSE FALSE 7749.85065 8813.106123 9066.417702 8830.118269 8887.936952 7866.149028 9017.802362 8436.639079 8890.379503 8197.548856 0.945386333 1.075090405 1.105991298 1.077165678 1.084218845 0.959573302 1.100060825 1.029166063 1.084516806 1 13.00097688 -7.255003724 24.89245598 0.974210212 1.062338817 0.056303692 0.054327085 308.6684499 1193898.338 0.007221287 0.00873178 5.56E-08 7.255003724 0.088128605 GKELSDQATAS(ph)PIVAR ddPTM_HeLa_CUDC101_4h_R1 3 GKELSDQATASPIVAR 16 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 GKELSDQAT(0.005)AS(0.995)PIVAR;GKELSDQATAS(1)PIVAR;GKELSDQAT(0.05)AS(0.95)PIVAR ;; 166.9 5.73E-05 249666000 6650.7 7248.38 7337.82 7206.9 8164.53 6906.2 7621.78 6406.63 7604.84 6409.28 TRUE FALSE FALSE 5871.115028 7471.693996 7734.524745 7500.828533 7562.248888 6774.475742 7915.754608 7135.934863 7291.365276 6371.157318 0.921514685 1.172737326 1.213990545 1.177310206 1.186950582 1.063303793 1.242435905 1.120037461 1.144433407 1 12.63733975 -7.254896311 24.97756452 0.962937489 1.169780333 0.374329207 0.075786208 165.3958813 631383.7411 0.008551249 0.01034501 5.56E-08 7.254896311 0.206842844 IIILYDDDER ddPTM_HeLa_CUDC101_4h_R1 2 IIILYDDDER 10 0 Q9BYV8-5;Q9BYV8-2;Q9BYV8 Q9BYV8-5 CEP41 Centrosomal protein of 41 kDa 0 0 ; ; 167.97 1.70E-05 4806500 3672.9 3457.2 3440.2 3357 3246.6 3558 3500.2 2876.8 3293.2 3351.4 FALSE FALSE TRUE 3242.36823 3563.712234 3626.187618 3493.91297 3007.104786 3490.137078 3635.203886 3204.283284 3157.452902 3331.465724 0.973255767 1.069713012 1.088466134 1.048761494 0.902637168 1.047628091 1.091172531 0.961823879 0.947766888 1 11.70194133 -7.283773552 24.56932394 0.987370779 1.031125864 0.159205315 0.056749561 1039.548011 1143578.997 0.009501399 0.010869894 5.20E-08 7.283773552 0.043755085 HNT(ph)PSLLEAALTQEASTPDSQVWPTAPDITR ddPTM_HeLa_CUDC101_4h_R1 1 HNTPSLLEAALTQEASTPDSQVWPTAPDITR 31 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 HNT(0.506)PS(0.489)LLEAALT(0.004)QEAS(0.001)T(0.001)PDSQVWPTAPDITR 48.348 0.035816 3862300 535.28 293.79 283.81 268.93 205.08 411.57 310.62 294.9 402.66 425.4 TRUE FALSE FALSE 472.5352898 302.8413217 299.1536271 279.8981278 189.951657 403.719988 322.6007175 328.470224 386.0621844 422.8697019 1.117448916 0.716157531 0.707436891 0.661901589 0.449196658 0.954714859 0.762884444 0.776764622 0.91295778 1 8.724069386 -7.254852498 24.32325315 1.05546199 0.716280914 0.512194249 0.12817025 170.958805 631296.3439 0.020650382 0.02496411 5.56E-08 7.254852498 -0.339181076 VGSLT(ph)PPSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 VGSLTPPSSPK 11 0 Q2M2I8-2;Q2M2I8;E9PG46 Q2M2I8-2 AAK1 AP2-associated protein kinase 1 2 0 VGS(0.41)LT(0.58)PPS(0.155)S(0.855)PK 110.08 0.00085464 0 2755.2 2820.3 2584.6 2916 2878.5 3091.8 2527.9 2578.7 3038.5 2689.9 TRUE FALSE FALSE 2432.239633 2907.1901 2724.331294 3034.927084 2666.15879 3032.829066 2625.40195 2872.248785 2913.251744 2673.900355 0.90962239 1.087246985 1.018860441 1.135018767 0.997104767 1.134234139 0.981862299 1.074179439 1.089513952 1 11.38472999 -7.254498413 24.97404147 0.957321684 1.059715421 0.05290854 0.067388888 367.9651371 1323961.889 0.008979483 0.010863644 5.57E-08 7.254498413 0.102393737 DFSASYFSGEQEVT(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 2 DFSASYFSGEQEVTPSR 17 0 P49454 P49454 CENPF Centromere protein F 1 0 DFSASYFSGEQEVT(1)PSR;DFSASYFSGEQEVT(1)PSR ; 276.14 1.53E-85 64704000 5616.9 3907.9 3815.8 4100.9 4936 4787.9 3537.7 1121.22 5141.7 4647.6 TRUE FALSE FALSE 4958.495497 4028.297767 4022.09369 4268.152428 4571.881114 4696.578785 3674.150274 1248.855153 4929.75695 4619.955869 1.073277676 0.871934253 0.870591366 0.923851342 0.98959411 1.016585205 0.795278219 0.27031755 1.067057152 1 12.17366336 -4.270501174 2.151982064 1.000395744 0.080408254 0.898261449 0.071163043 0.156525604 0.814791033 0.011672219 0.274184201 5.36E-05 4.270501174 -0.91998749 down IILWDHDLNPER ddPTM_HeLa_CUDC101_4h_R1 2 IILWDHDLNPER 12 0 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 0 0 ; ; 190.36 3.67E-11 18688300 5661 4528.9 4531.3 4941 5072.3 4752.1 4377.5 4100.9 4635.7 4958.4 FALSE FALSE TRUE 4997.426162 4668.430041 4776.275784 5142.515337 4698.126534 4661.46161 4546.341641 4567.72988 4444.614484 4928.907216 1.013901448 0.947153159 0.969033413 1.043337825 0.953178124 0.945739371 0.922383287 0.926722634 0.901744401 1 12.26705211 -5.574862794 7.024894895 1.000950529 0.933655095 0.098933595 0.040059301 0.107199755 11.59098928 0.003777363 0.007613931 2.66E-06 5.574862794 -0.067295435 IINEPTAAAIAYGLDK ddPTM_HeLa_CUDC101_4h_R1 1 IINEPTAAAIAYGLDK 16 0 P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;E9PI65;P54652;Q53FA3;P34931;P11021 P11142;P54652;Q53FA3;P11021 HSPA8;HSPA2;HSPA1L;HSPA5 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1-like;78 kDa glucose-regulated protein 0 0 150.12 1.14E-06 0 700.24 710.88 462.57 491.67 712.77 699.58 534.42 538.8 688.67 845.87 FALSE FALSE TRUE 618.1589287 732.7813702 487.5779334 511.7224278 660.1903771 686.2366771 555.0327584 600.1348141 660.2827311 840.8387276 0.735169431 0.871488606 0.579870928 0.608585703 0.785156958 0.816133528 0.66009419 0.713733555 0.785266793 1 9.715685309 -9.152260384 0.507107056 1.051699427 0.708076188 0.200076363 0.106715109 0.761557572 0.285598713 0.128918585 0.023155638 7.04E-10 9.152260384 -0.343623239 IINEPTAAAIAYGLDKK ddPTM_HeLa_CUDC101_4h_R1 1 IINEPTAAAIAYGLDKK 17 1 P11142;E9PKE3;P11142-2;E9PN89;E9PI65;P54652 P11142;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 106.87 0.0014306 15297000 1148.3 1002.7 1039.3 1211.1 1126.5 1128 931.98 793.22 1158.3 1196.3 FALSE FALSE TRUE 1013.698015 1033.591999 1095.487702 1260.493893 1043.400339 1106.485279 967.9267808 883.5169585 1110.554384 1189.184354 0.852431342 0.869160442 0.921209313 1.059965083 0.877408398 0.930457313 0.813941738 0.742960463 0.933879074 1 10.21575667 -13.52287478 0.016494054 2.057495525 4.29E-07 0.248760848 0.074512257 4629.261216 6.164516613 484.8174138 304.0291794 3.00E-14 13.52287478 -2.057495096 IINEPTAAAIAYGLDKR ddPTM_HeLa_CUDC101_4h_R1 1 IINEPTAAAIAYGLDKR 17 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 132.87 0.00025689 10394000 1146.3 774.72 919.49 1007.5 1178.2 879.57 749.9 1165.6 1263.9 786.56 FALSE FALSE TRUE 1011.932452 798.5882049 969.2004107 1048.590205 1091.286533 862.7936677 778.8238942 1298.287192 1211.801507 781.8815061 1.294227378 1.021367303 1.239574543 1.341111404 1.395718564 1.103483918 0.996089418 1.660465406 1.54985314 1 9.610806174 -12.54871728 0.271936991 3.57E-08 1.2748241 0 0.252537584 32.20665879 0.695595545 17.36259382 0.091341689 2.83E-13 12.54871728 1.274824064 QENGDLS(ph)PFSGTSLR ddPTM_HeLa_CUDC101_4h_R1 1 QENGDLSPFSGTSLR 15 0 P19174-2 P19174-2 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" 1 0 QENGDLS(0.901)PFS(0.095)GT(0.002)S(0.001)LR 193.54 6.49E-24 0 1527.2 963.35 944.88 931.89 1077.1 1318.8 1030.3 731.28 1251.6 1198.4 TRUE FALSE FALSE 1348.183931 993.0296716 995.9630709 969.8965022 997.6444789 1293.646087 1070.039016 814.5259593 1200.008518 1191.271864 1.131718101 0.833587783 0.836050193 0.8141689 0.837461632 1.085936911 0.898232426 0.683744814 1.007333888 1 10.21828698 -7.254323814 24.88833216 1.062200215 0.863053766 0.430875112 0.099709672 359.6949012 1258116.761 0.017604574 0.021313217 5.57E-08 7.254323814 -0.199146449 KT(ph)VSLTPSPTT(ph)QVETPDLVDHDNTSPLFR ddPTM_HeLa_CUDC101_4h_R1 1 KTVSLTPSPTTQVETPDLVDHDNTSPLFR 29 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 2 0 KT(0.405)VS(0.405)LT(0.133)PS(0.133)PT(0.324)T(0.547)QVET(0.055)PDLVDHDNTSPLFR 45.511 0.016742 11525000 917.16 625.89 714.54 648.83 710.49 640.08 696.12 598.76 599.19 716.86 TRUE FALSE FALSE 809.6518951 645.172929 753.1701938 675.2920919 658.0785682 627.8715404 722.9695816 666.9204181 574.4911346 712.5960848 1.136200314 0.905383769 1.056938439 0.947650578 0.923494504 0.881104393 1.014557331 0.935902445 0.806194627 1 9.476940747 -7.254148086 24.99695989 1.064316815 0.954570755 0 0.099592815 450.7634681 1545367.512 0.011300047 0.013688727 5.57E-08 7.254148086 -0.10974606 IIPGFMCQGGDFTR ddPTM_HeLa_CUDC101_4h_R1 6 IIPGFMCQGGDFTR 14 0 P62937;F8WE65;C9J5S7;P0DN26;A0A0H2UH34;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284 P62937 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D" 0 0 ;;;;; ;;;;; 214.67 2.14E-23 2153492000 6836.59 6320.12 5658.1 6045.81 6862.91 5552.39 5720.05 5825.43 5953.73 3718.87 FALSE FALSE TRUE 6035.215284 6514.835406 5963.994001 6292.384264 6356.646802 5446.487412 5940.674245 6488.573404 5708.314729 3696.749996 1.632573285 1.762314307 1.613307367 1.70213952 1.719523043 1.473317757 1.606999189 1.755210228 1.544144109 1 11.85204176 -9.054017205 0.688187116 0.963342792 1.661699768 0.246976868 0.184486523 0.193101842 0.155595379 0.076482165 0.019262003 8.83E-10 9.054017205 0.698356976 LSSGLVS(ph)PAPSFYSK ddPTM_HeLa_CUDC101_4h_R1 2 LSSGLVSPAPSFYSK 15 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 LSSGLVS(0.997)PAPS(0.002)FYSK;LSS(0.009)GLVS(0.99)PAPS(0.001)FYSK ; 174.39 4.52E-07 72587000 6396.6 4678.6 4922.6 4376.5 4341 4738.5 5108.3 5303.8 5131.1 5332.7 TRUE FALSE FALSE 5646.800245 4822.74212 5188.730646 4554.992587 4020.773078 4648.121007 5305.328842 5907.563153 4919.593886 5300.980863 1.065236867 0.909782971 0.978824633 0.859273539 0.758496056 0.876841688 1.000820222 1.114428312 0.928053508 1 12.37204362 -7.254098673 24.58172669 1.030806298 0.921909935 0.066459416 0.095931067 520.3138937 1742369.42 0.016138442 0.019540315 5.57E-08 7.254098673 -0.108896364 GRAS(ph)PGGVSTSSSDGKAEK ddPTM_HeLa_CUDC101_4h_R1 3 GRASPGGVSTSSSDGKAEK 19 2 P54259 P54259 ATN1 Atrophin-1 1 0 GRAS(1)PGGVSTSSSDGKAEK;GRAS(1)PGGVSTSSSDGKAEK;GRAS(1)PGGVSTSSSDGKAEK ;; 69.422 0.0058608 59962000 10790.6 11257.7 12002.9 11452 14987.4 10506.9 9198 8481.7 12652.8 10510.8 TRUE FALSE FALSE 9525.742225 11604.53639 12651.81308 11919.06206 13881.80936 10306.49839 9552.769941 9447.222444 12131.24623 10448.28129 0.911704227 1.110664622 1.210898972 1.140767723 1.328621327 0.986430026 0.914291037 0.904189137 1.161075768 1 13.35097802 -7.254067475 24.32405585 0.958304774 1.091099913 0 0.139927443 520.7373174 1718205.254 0.022598968 0.027376666 5.57E-08 7.254067475 0.132795139 ESEEGNPVRGSEEDS(ph)PKKESK ddPTM_HeLa_CUDC101_4h_R1 2 ESEEGNPVRGSEEDSPKKESK 21 3 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ES(0.001)EEGNPVRGS(0.011)EEDS(0.894)PKKES(0.095)K;ES(0.001)EEGNPVRGS(0.005)EEDS(0.987)PKKES(0.007)K ; 54.74 0.019598 398210000 6938.3 7634.5 8612.6 8044.4 9616.9 8258 8597.1 5176 8617 5666.2 TRUE FALSE FALSE 6125.002992 7869.709896 9078.223208 8372.485403 8907.480447 8100.492409 8928.693027 5765.214918 8261.803613 5632.49719 1.087440044 1.397197305 1.611758142 1.486460644 1.581444277 1.438170697 1.585210383 1.023562857 1.466810073 1 12.45955897 -7.253997302 3.204238297 1.037088874 1.469769397 0.158098602 0.208125368 0.115338185 2.404888903 0.025768917 0.030613668 5.57E-08 7.253997302 0.432680523 IISIFSGTEK(ac)GSK ddPTM_HeLa_CUDC101_4h_R1 2 IISIFSGTEKGSK 13 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 0 1 ; IISIFSGTEK(1)GSK;IISIFSGTEK(1)GSK 228.93 2.03E-23 3371300 217.49 167.6 263.715 395.385 543.61 231.36 327.88 523.57 310.96 116.51 FALSE TRUE FALSE 191.9961519 172.7635573 277.9722306 411.5105093 503.5089733 226.9471935 340.5264414 583.1710925 298.1420972 115.8169933 1.657754586 1.491694374 2.400098833 3.553109932 4.34745333 1.959532767 2.940211377 5.035280883 2.574251745 1 6.855703139 -6.554450672 2.227132066 1.318982118 3.489332893 0.49415212 0.872331308 0.149032786 1.489904469 0.127372527 0.19546638 2.79E-07 6.554450672 2.170350774 IISNASCTTNCLAPLAK ddPTM_HeLa_CUDC101_4h_R1 1 IISNASCTTNCLAPLAK 17 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 247.17 1.36E-49 526290 182.91 0 234.51 0 139.88 76.196 145.86 0 0 0 FALSE FALSE TRUE 161.4695671 0 247.18832 0 129.5613311 74.74268825 151.4858691 0 0 0 0 LVSFHDDS(ph)DEDLLHI ddPTM_HeLa_CUDC101_4h_R1 2 LVSFHDDSDEDLLHI 15 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 1 0 LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI ; 85.469 0.0097125 5138700 4213.7 2124.27 1767.09 1774.42 3343.2 3346.5 2509.3 1792.56 2898.7 2915.1 TRUE FALSE FALSE 3719.776474 2189.716241 1862.624231 1846.788517 3096.578797 3282.671088 2606.084542 1996.617785 2779.214359 2897.760856 1.28367269 0.755658024 0.64278052 0.63731571 1.068610886 1.132830227 0.899344242 0.689020897 0.959090311 1 11.50072282 -7.253621487 24.91756759 1.133956549 0.840675501 0.272785697 0.179564246 505.773169 1612025.417 0.033465628 0.040587572 5.58E-08 7.253621487 -0.293281048 IETIAASS(ph)TPTPIRK ddPTM_HeLa_CUDC101_4h_R1 1 IETIAASSTPTPIRK 15 1 Q96P47;Q96P47-2;Q96P47-4;Q96P47-5;H7C5G0;H7C4U6;E7ESL9;Q96P47-3;Q96P47-6 Q96P47 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" 1 0 IETIAAS(0.151)S(0.697)T(0.151)PT(0.001)PIRK 76.586 0.01436 46899000 3001.8 1640.4 2025.1 1700.5 1531.6 1254.4 1429.3 2333.5 2064.3 2287.7 TRUE FALSE FALSE 2649.933554 1690.93878 2134.583032 1769.85374 1418.616919 1230.47441 1484.42858 2599.136208 1979.20868 2274.092659 1.165270704 0.743566351 0.93865262 0.778268086 0.623816674 0.541083674 0.652756419 1.142933292 0.870328952 1 11.15107532 -7.253556198 24.52888071 1.0780445 0.761454172 0.249095291 0.177114611 322.1088336 1002256.582 0.028432293 0.034477631 5.58E-08 7.253556198 -0.316590328 WES(ph)QQDVSQTTVSR ddPTM_HeLa_CUDC101_4h_R1 1 WESQQDVSQTTVSR 14 0 H0YBA8;Q9NQT8 H0YBA8 KIF13B Kinesin-like protein KIF13B 1 0 WES(1)QQDVSQTTVSR 144.4 0.00039363 3680300 931.55 701.85 613.7 695.16 733.89 889.72 641.61 753.46 927.24 782.97 TRUE FALSE FALSE 822.3551211 723.4731666 646.8784783 723.5116295 679.7523968 872.7500734 666.3571126 839.2308408 889.0187747 778.3128596 1.056586835 0.929540297 0.831129115 0.929589715 0.873366524 1.1213358 0.856155856 1.078269272 1.142238322 1 9.604206384 -7.253553628 23.86727801 1.026721561 0.941143717 0.22156541 0.095084561 405.6421043 1227729.783 0.013892517 0.016835758 5.58E-08 7.253553628 -0.085577844 YQEDS(ph)DPERS(ph)DYEEQQLQK ddPTM_HeLa_CUDC101_4h_R1 2 YQEDSDPERSDYEEQQLQK 19 1 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 2 0 Y(0.003)QEDS(0.996)DPERS(0.816)DY(0.186)EEQQLQK;Y(0.003)QEDS(0.994)DPERS(0.953)DY(0.049)EEQQLQK ; 80.786 0.0066941 21911600 10917.9 7442.8 7597.4 7808.2 6608.2 8338.4 7279.9 6348 7641.6 9851.9 TRUE FALSE FALSE 9638.120312 7672.103846 8008.138425 8126.652146 6120.726251 8179.358913 7560.688182 7070.630661 7326.610014 9793.300461 0.984154459 0.783403295 0.817715994 0.829817504 0.624991164 0.835199425 0.772026572 0.721986494 0.748124705 1 13.25757943 -7.253440372 4.025709418 0.993605642 0.768859737 0.187718466 0.096834494 0.071830339 2.727100285 0.009536736 0.011338966 5.58E-08 7.253440372 -0.224745905 IIVDELKQEVISTSSK ddPTM_HeLa_CUDC101_4h_R1 1 IIVDELKQEVISTSSK 16 1 D6RAC2;P63244;H0YAF8;J3KPE3;D6REE5;D6RF23;H0YAM7;H0Y8W2;H0Y9P0 D6RAC2 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed" 0 0 80.102 0.019795 6292600 838.92 683.51 782.04 693.16 1054.5 784.48 771.67 1066 924.43 1352.7 FALSE FALSE TRUE 740.5830693 704.5681329 824.3194479 721.4300609 976.7116359 769.517351 801.4335704 1187.349131 886.3246041 1344.65408 0.550761032 0.523977239 0.613034579 0.536517214 0.726366469 0.572279044 0.596014679 0.88301456 0.659146926 1 10.39301936 -9.271737683 0.955193576 1.00446972 0.616505997 0.08101016 0.145082886 0.268446293 0.431490535 0.072392248 0.018794702 5.35E-10 9.271737683 -0.387963724 IIVEK(ac)PFGR ddPTM_HeLa_CUDC101_4h_R1 2 IIVEKPFGR 9 1 P11413-3;P11413;P11413-2;E9PD92;E7EM57;E7EUI8 P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 1 ; IIVEK(1)PFGR;IIVEK(1)PFGR 150.36 0.00157 22605000 3686.7 1574.87 1710.96 1219.24 3432.5 2703.1 2992.7 2362.51 2662.87 1580.61 FALSE TRUE FALSE 3254.550615 1623.389878 1803.459673 1268.965877 3179.291314 2651.542871 3108.129441 2631.448589 2553.105372 1571.208461 2.0713678 1.033211008 1.14781693 0.807636866 2.023468809 1.687581843 1.978177637 1.674792781 1.624931022 1 10.61765889 -9.669263931 1.528780911 1.000559132 1.617010277 0 0.456279403 0.528736091 2.227654737 0.326574999 0.07339973 2.14E-10 9.669263931 0.616451145 FSLCS(ph)DNLEGISEGPSNR ddPTM_HeLa_CUDC101_4h_R1 1 FSLCSDNLEGISEGPSNR 18 0 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;H0Y7I9;C9IZ08;B4DGD8;A0A0A0MQV8 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 FS(0.024)LCS(0.976)DNLEGISEGPSNR 108.71 0.00055587 5771700 422.97 539.43 582.71 347.08 560.94 576.48 524.15 360.31 530.06 493.86 TRUE FALSE FALSE 373.3900978 556.0491989 614.2130652 361.2354226 519.5605738 565.4846045 544.3666411 401.326234 508.2107024 490.9224988 0.760588685 1.132661877 1.251140591 0.735829838 1.058335226 1.151881623 1.108864724 0.817494075 1.035215749 1 8.939351476 -7.253400027 24.9465694 0.886944656 1.041333685 0.059835721 0.162357189 818.5748903 2540085.642 0.027629871 0.033519765 5.58E-08 7.253400027 0.154389029 DS(ph)PVIVR ddPTM_HeLa_CUDC101_4h_R1 2 DSPVIVR 7 0 I3L2J0 I3L2J0 CIC 1 0 DS(1)PVIVR;DS(1)PVIVR ; 99.802 0.022136 10809300 7500.5 5346.2 5009.7 4798.9 4562.5 5008.7 4983.1 5222.7 7491.6 7287.1 TRUE FALSE FALSE 6621.30276 5510.910085 5280.539536 4994.619885 4225.933465 4913.167393 5175.299836 5817.231057 7182.793077 7243.756005 0.914070374 0.760780744 0.728978106 0.689506919 0.583389813 0.678262408 0.714449773 0.803068333 0.991584072 1 12.82252224 -7.253343145 1.268132303 0.972391744 0.687963691 0.840980108 0.052862412 0.115206081 0.35666915 0.011387204 0.013569622 5.58E-08 7.253343145 -0.284428053 IIYGGSVTGATCK ddPTM_HeLa_CUDC101_4h_R1 1 IIYGGSVTGATCK 13 0 P60174;P60174-3;P60174-4 P60174 TPI1 Triosephosphate isomerase 0 0 133.42 0.00040213 0 235.79 242.44 0 57.627 158.7 166.91 141.86 208.66 195.03 0 FALSE FALSE TRUE 208.1510536 249.909289 0 59.97727815 146.9930172 163.7264698 147.3315877 232.413011 186.9907809 0 0 IIYIVHDEVKDK ddPTM_HeLa_CUDC101_4h_R1 1 IIYIVHDEVKDK 12 1 P25788-2;P25788;G3V4X5 P25788-2 PSMA3 Proteasome subunit alpha type-3 0 0 72.096 0.029272 10095000 4831.9 5168.8 5256.9 5120.7 5638.6 4994.5 4842 5220.3 5914.4 5623.2 FALSE FALSE TRUE 4265.512007 5328.044601 5541.103915 5329.54428 5222.651712 4899.238234 5028.757562 5814.557851 5670.605929 5589.752956 0.763094906 0.953180694 0.991296746 0.953448984 0.934326034 0.876467757 0.899638607 1.040217322 1.014464498 1 12.44856881 IK(ac)FPTMK ddPTM_HeLa_CUDC101_4h_R1 1 IKFPTMK 7 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 1 IK(1)FPTMK 94.302 0.026648 922780 1695.9 458.84 409.19 524.58 1082.4 1259.7 1389.7 1144 1188.5 608.1 FALSE TRUE FALSE 1497.109173 472.9763165 431.3120491 545.9746398 1002.553508 1235.673321 1443.301195 1274.228336 1139.509527 604.4829942 2.476677073 0.78244768 0.713522222 0.903209263 1.658530543 2.044182108 2.387662198 2.10796391 1.885097741 1 9.239557943 -9.768621999 1.738171891 0.999089825 1.752851597 0 0.679401432 0.634440783 3.467304409 0.534253941 0.113738356 1.70E-10 9.768621999 0.753761772 IK(ac)IIAPPER ddPTM_HeLa_CUDC101_4h_R1 2 IKIIAPPER 9 1 P60709;P63267-2;A0A2R8YFE2;Q562R1;P63267;P68133;P68032;P62736;A6NL76;P63261 P60709;P63267;P63261 ACTB;ACTG2;ACTBL2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 1 ; IK(1)IIAPPER;IK(1)IIAPPER 101.65 0.010583 8560700 1828.38 1639.14 1827.97 1819.17 1736.42 1634.52 2129.69 1645.99 1942.26 2181.49 FALSE TRUE FALSE 1614.060068 1689.639961 1926.795588 1893.363616 1608.327756 1603.344254 2211.832857 1833.362848 1862.199221 2168.5144 0.744316048 0.779169352 0.88853253 0.873115537 0.74167262 0.739374502 1.019976098 0.845446472 0.858744226 1 11.08249131 -9.489917332 1.240413645 0.999773854 0.821876931 0.08594459 0.092524787 0.400783449 1.105719269 0.060103972 0.014730248 3.24E-10 9.489917332 -0.177896923 IK(ac)IIAPPERK ddPTM_HeLa_CUDC101_4h_R1 1 IKIIAPPERK 10 2 P60709;P63267-2;A0A2R8YFE2;Q562R1;P63267;P68133;P68032;P62736;A6NL76;P63261 P60709;P63267;P63261 ACTB;ACTG2;ACTBL2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 1 IK(1)IIAPPERK 102.95 0.0042723 0 1660.6 1393 1157.3 1326.6 1468.9 1426 1412.2 1928 1624 1386.8 FALSE TRUE FALSE 1465.946985 1435.916679 1219.867139 1380.704482 1360.542173 1398.801426 1466.669027 2147.475727 1557.058033 1378.551252 1.063396797 1.041612836 0.884890668 1.001561951 0.986936229 1.01468946 1.063920565 1.557777213 1.129488679 1 10.42893719 -4.257814127 3.819956863 1.015513441 1.614142537 0.884096579 0.058568964 0.053484774 1.504639694 0.007107758 0.089937795 5.52E-05 4.257814127 0.598629095 IKDIAWTEDSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 IKDIAWTEDSKR 12 2 D6RD66;O75083 D6RD66 WDR1 WD repeat-containing protein 1 0 1 ; IKDIAWTEDSK(1)R;IKDIAWTEDSK(1)R 90.793 0.033232 4371000 3558.4 1909.04 1815.11 1627.7 3298.5 2855.3 3377.7 2873.9 2935.9 2234.6 FALSE TRUE FALSE 3141.289746 1967.85526 1913.240337 1694.084642 3055.176227 2800.83991 3507.97902 3201.053159 2814.880959 2221.3085 1.414161854 0.885899126 0.861312302 0.762651672 1.37539483 1.260896409 1.579239903 1.441066452 1.26721748 1 11.11719406 -5.161475423 1.971542458 1.12287619 1.496534964 0.390115146 0.210873925 0.362772199 2.683967337 0.037051373 0.128649336 6.89E-06 5.161475423 0.373658774 IKDMDLWEQQEEER ddPTM_HeLa_CUDC101_4h_R1 4 IKDMDLWEQQEEER 14 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ;;; ;;; 170.74 5.88E-07 74359000 8784 7411.8 7274.7 7119.1 7876.5 7974.8 6809.8 7454.9 7603.8 7782.6 FALSE FALSE TRUE 7754.352836 7640.148773 7667.992287 7409.447669 7295.466287 7822.693977 7072.456267 8303.535682 7290.368146 7736.308749 1.00233239 0.987570303 0.991169372 0.957749737 0.943016434 1.011166207 0.914190022 1.0733201 0.942357445 1 12.91742966 -6.840575913 1.980788985 1.000974925 0.976417555 0 0.044193803 0.634745776 5.078308156 0.006091549 0.008477256 1.44E-07 6.840575913 -0.024557369 CSMSSSADFS(ph)DEDDFSQK ddPTM_HeLa_CUDC101_4h_R1 1 CSMSSSADFSDEDDFSQK 18 0 F6QMI7;E7ETB9;Q5T0V7;Q03001-11 F6QMI7 DST Dystonin 1 0 CSMSSSADFS(1)DEDDFSQK 127.49 7.20E-05 3727800 2436.9 1600.4 1820.8 1626.9 1557.4 1861.4 1852 1646.4 1941.5 1854.5 TRUE FALSE FALSE 2151.250276 1649.706427 1919.237956 1693.252014 1442.513705 1825.896896 1923.43226 1833.819521 1861.470548 1843.469352 1.166957441 0.894892245 1.041101092 0.918513786 0.782499423 0.990467726 1.043376316 0.994765397 1.009764847 1 10.84820772 -7.252945955 24.99641102 1.078841014 0.952800243 0.241096097 0.084536491 621.7727417 1829898.264 0.01599616 0.019429774 5.59E-08 7.252945955 -0.126040772 QPGQGS(ph)PTPDNDPGRETDDK ddPTM_HeLa_CUDC101_4h_R1 1 QPGQGSPTPDNDPGRETDDK 20 1 P61129 P61129 ZC3H6 Zinc finger CCCH domain-containing protein 6 1 0 QPGQGS(0.94)PT(0.057)PDNDPGRET(0.003)DDK 52.849 0.026884 7072300 1227.1 1677.2 1520.8 1533.3 2222.9 2138.1 1662.5 1340.9 1998.9 1042.3 TRUE FALSE FALSE 1083.261198 1728.872544 1603.019048 1595.834601 2058.921096 2097.319305 1726.623182 1493.542636 1916.504496 1036.100353 1.045517642 1.668634258 1.547165816 1.540231693 1.987183084 2.024243403 1.666463269 1.441503838 1.849728639 1 10.01694803 -7.252928864 4.051642807 1.018224343 1.712647043 0.089041879 0.315841024 0.077531688 2.998014979 0.031931831 0.037978165 5.59E-08 7.252928864 0.6944227 IKEDEDDKTVLDLAVVLFETATLR ddPTM_HeLa_CUDC101_4h_R1 2 IKEDEDDKTVLDLAVVLFETATLR 24 2 P14625;H0YIV0 P14625 HSP90B1 Endoplasmin 0 0 ; ; 115.54 1.32E-07 4059090 4725 4500.86 4126.23 4247.54 5252.48 3946.41 3841.81 3603.78 4288.03 5308.44 FALSE FALSE TRUE 4171.142663 4639.526162 4349.306475 4420.773041 4865.015015 3871.138804 3989.989899 4014.019748 4111.275588 5276.865163 0.790458451 0.879220147 0.824221643 0.837765018 0.921951739 0.733605784 0.756128833 0.760682645 0.779113254 1 12.3654654 -13.52287875 0.227571053 2.054127671 0.784187348 0 0.087701723 22.97524308 0.294828209 10.80884833 0.041632688 3.00E-14 13.52287875 -1.269940324 KPPEADMNIFEDIGDYVPSTTKT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 KPPEADMNIFEDIGDYVPSTTKTPR 25 2 Q13123 Q13123 IK Protein Red 1 0 KPPEADMNIFEDIGDYVPS(0.048)T(0.147)T(0.147)KT(0.658)PR;KPPEADMNIFEDIGDY(0.022)VPS(0.141)T(0.141)T(0.141)KT(0.554)PR;KPPEADMNIFEDIGDY(0.001)VPS(0.222)T(0.222)T(0.222)KT(0.332)PR ;; 99.753 8.12E-06 98854000 8340.1 8534.1 8107 8233.7 10276.7 8858 7171.1 2928.27 8994.6 8982.2 TRUE FALSE FALSE 7362.486121 8797.025506 8545.288942 8569.505875 9518.608315 8689.048408 7447.691729 3261.61242 8623.838781 8928.773475 0.824579786 0.985244561 0.957050704 0.959762939 1.066060007 0.9731514 0.834122598 0.365292325 0.965848087 1 13.12424629 -4.270373645 2.950246809 0.939553788 0.274718416 0.893829217 0.061550024 0.116033944 1.462682034 0.011344988 0.180010947 5.37E-05 4.270373645 -0.664835373 down IQAAAST(ph)PTNATAASDANTGDR ddPTM_HeLa_CUDC101_4h_R1 1 IQAAASTPTNATAASDANTGDR 22 0 P49841;P49841-2 P49841 GSK3B Glycogen synthase kinase-3 beta 1 0 IQAAAS(0.106)T(0.88)PT(0.013)NATAASDANTGDR 210.66 1.30E-25 7664500 1719.9 1206.5 996.54 1223.5 1464.5 1222.4 1170.1 1218 1477.5 1436.8 TRUE FALSE FALSE 1518.295929 1243.670835 1050.415967 1273.399618 1356.466753 1199.084757 1215.231149 1356.652197 1416.596825 1428.25385 1.063043471 0.87076316 0.735454672 0.891577935 0.949737859 0.839545965 0.850850953 0.949867698 0.991838268 1 10.4800367 -7.252913206 23.81541947 1.029770528 0.866560068 0.559832878 0.060082993 160.5158662 448354.8675 0.010206879 0.012386803 5.59E-08 7.252913206 -0.16321046 FIQENVFVAANHNGS(ph)PLSIK ddPTM_HeLa_CUDC101_4h_R1 3 FIQENVFVAANHNGSPLSIK 20 0 E9PFD2;P11172-4;P11172-2;P11172-3;P11172 E9PFD2 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase 1 0 FIQENVFVAANHNGS(0.909)PLS(0.091)IK;FIQENVFVAANHNGS(0.995)PLS(0.005)IK;FIQENVFVAANHNGS(0.75)PLS(0.25)IK ;; 145.16 1.46E-05 345519200 7038.1 5775.4 5421.3 5579.3 6524.6 6095.7 5847.5 4839.6 6615.8 6358.4 TRUE FALSE FALSE 6213.104587 5953.333228 5714.391877 5806.84797 6043.293257 5979.434679 6073.040034 5390.520502 6343.093924 6320.579954 0.982995964 0.941896673 0.904092966 0.918720752 0.956129548 0.94602627 0.960835885 0.852852197 1.00356201 1 12.62584123 -7.252712647 2.702765359 0.992913907 0.926840533 0.547380254 0.029409715 0.159244441 2.255549969 0.004995595 0.005938221 5.59E-08 7.252712647 -0.066073374 IKEIAVTVK ddPTM_HeLa_CUDC101_4h_R1 2 IKEIAVTVK 9 1 Q99832-4;Q99832-3;Q99832 Q99832-4 CCT7 T-complex protein 1 subunit eta 0 0 ; ; 115.57 0.00021759 0 6053.8 5307.6 5104.4 5054.1 5641.2 4862.7 4912.1 4769.2 4726.4 4071.7 FALSE FALSE TRUE 5344.182741 5471.120865 5380.359304 5260.228044 5225.059915 4769.952099 5101.561342 5312.10645 4531.575792 4047.481347 1.32037242 1.35173467 1.329310463 1.299629965 1.290941073 1.178498847 1.260428623 1.31244742 1.119603873 1 11.98280872 -9.196012309 0.872750189 0.994547151 1.29190663 0.713736916 0.057180897 0.198584336 0.264916512 0.038541715 0.010135512 6.37E-10 9.196012309 0.297359479 ALS(ph)PEGALRR ddPTM_HeLa_CUDC101_4h_R1 2 ALSPEGALRR 10 1 K7EPS7;I3L2Z9;I3L100;I3L2W2;Q96JN8-2;Q96JN8 K7EPS7 NEURL4 Neuralized-like protein 4 1 0 ALS(1)PEGALRR;ALS(1)PEGALRR ; 75.788 0.028235 11152900 3286.7 3293.3 3309.2 3197.2 3779.4 3477.6 2984.4 3018.5 3847.3 3135.1 TRUE FALSE FALSE 2901.438008 3394.762669 3488.105362 3327.595635 3500.601192 3411.270574 3099.509308 3362.113839 3688.712666 3116.452286 0.931006716 1.089303592 1.119255179 1.06775119 1.123264812 1.09460061 0.994563376 1.078827311 1.183625587 1 11.60568891 -7.252652524 24.87869429 0.967419838 1.080851288 0 0.077645267 290.3554679 822099.064 0.00704608 0.008558192 5.59E-08 7.252652524 0.11343145 CTELNQAWSS(ph)LGK ddPTM_HeLa_CUDC101_4h_R1 1 CTELNQAWSSLGK 13 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 CTELNQAWS(0.03)S(0.97)LGK 99.834 0.0097658 16979000 1228.8 1692.4 1321.7 1480.8 1690.4 1716.1 1662.2 1223.4 1615.7 1535.4 TRUE FALSE FALSE 1084.761927 1744.540838 1393.1551 1541.193425 1565.70256 1683.368252 1726.311611 1362.666911 1549.100162 1526.267373 0.710728635 1.14301129 0.912785744 1.009779448 1.025837666 1.102931427 1.131067624 0.89281009 1.014959888 1 10.575792 -7.25263926 24.99501513 0.863399632 1.032195065 0.167758314 0.112351198 637.6157503 1811023.466 0.021356646 0.025948573 5.59E-08 7.25263926 0.168795433 GDPGS(ph)SPAGPR ddPTM_HeLa_CUDC101_4h_R1 1 GDPGSSPAGPR 11 0 H3BRW8;Q9P1Z2-4;Q9P1Z2-2;Q9P1Z2-3;Q9P1Z2 H3BRW8 CALCOCO1 Calcium-binding and coiled-coil domain-containing protein 1 1 0 GDPGS(0.5)S(0.5)PAGPR 101.3 0.012559 21985000 3586.7 3382.9 3215.3 3496.7 4126.8 3850.3 3444.6 2649.6 3081.8 3041.5 TRUE FALSE FALSE 3166.272463 3487.123139 3389.128844 3639.31054 3822.374186 3776.861943 3577.459376 2951.219754 2954.7669 3023.409023 1.047252436 1.153374589 1.120962734 1.203710948 1.264259701 1.249206414 1.183253522 0.976123221 0.977296448 1 11.56196045 -7.252621775 1.240431227 1.014794505 1.181070945 0.465041362 0.076824097 0.270403172 0.802324388 0.015492977 0.01847099 5.59E-08 7.252621775 0.166276441 SGQGFHGNSEVNAILS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SGQGFHGNSEVNAILSPR 18 0 C9JW01;Q8TB72-2;Q8TB72-3;Q8TB72;A0A0A0MR59;Q8TB72-4 C9JW01 PUM2 Pumilio homolog 2 1 0 SGQGFHGNSEVNAILS(1)PR 157.53 2.30E-05 15183000 1581.7 1035.4 864.67 575.61 1862.6 1331.8 1100.2 887.27 1204.2 1230.1 TRUE FALSE FALSE 1396.295524 1067.299447 911.4166757 599.0858638 1725.199709 1306.398134 1142.635083 988.2732303 1154.562366 1222.78331 1.141899396 0.872844303 0.745362378 0.489936245 1.410879339 1.068380737 0.934454267 0.808216159 0.944208476 1 10.25595305 -7.252531149 24.29239969 1.067008048 0.909201276 0.051258234 0.227372252 836.6403021 2281484.865 0.038576108 0.046842838 5.59E-08 7.252531149 -0.157806772 PGQQS(ph)ETASQGT(ph)T(ph)T(ph)T(ph)TK ddPTM_HeLa_CUDC101_4h_R1 1 PGQQSETASQGTTTTTK 17 0 F8W9Q8 F8W9Q8 ADCK1 5 0 PGQQS(0.899)ET(0.605)AS(0.67)QGT(0.585)T(0.585)T(0.594)T(0.537)T(0.525)K 40.52 0.0032629 0 1937.3 1391.9 1314.9 1411.3 1591.3 1288 1304.3 1654.2 1857.6 1601.3 TRUE FALSE FALSE 1710.212631 1434.782789 1385.987471 1468.858914 1473.912969 1263.433546 1354.607288 1842.507441 1781.028942 1591.775396 1.074405745 0.901372639 0.870717989 0.92278026 0.925955366 0.793726017 0.851004037 1.157517226 1.118894629 1 10.63642107 -7.252163911 24.01592953 1.035136046 0.90897708 0.318679742 0.094978112 354.8289973 918718.6299 0.014854345 0.018049829 5.60E-08 7.252163911 -0.126158967 HWVAPGGPYSAETPGVPS(ph)PIAALK ddPTM_HeLa_CUDC101_4h_R1 1 HWVAPGGPYSAETPGVPSPIAALK 24 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 HWVAPGGPY(0.001)S(0.002)AET(0.408)PGVPS(0.589)PIAALK 91.202 2.15E-05 111480000 3669.5 2510.6 2500.1 2243.3 3020.6 2643.4 2540 2421.8 3250.2 2978 TRUE FALSE FALSE 3239.366773 2587.94861 2635.262968 2334.79147 2797.776356 2592.981549 2637.968651 2697.487923 3116.22538 2960.286724 1.094274668 0.87422228 0.890205313 0.788704503 0.945103166 0.875922433 0.891119306 0.911225221 1.052676876 1 11.5315212 -7.252139382 24.88377344 1.044518593 0.881560047 0.760755186 0.042796942 242.830839 649736.8272 0.008150462 0.00990939 5.60E-08 7.252139382 -0.162958546 IPNYQLS(ph)PTKLPSINK ddPTM_HeLa_CUDC101_4h_R1 2 IPNYQLSPTKLPSINK 16 1 A0A0C4DG07;O60934 A0A0C4DG07 NBN Nibrin 1 0 IPNY(0.005)QLS(0.937)PT(0.058)KLPSINK;IPNY(0.013)QLS(0.96)PT(0.024)KLPS(0.002)INK ; 92.671 0.0040249 331000000 10270.1 7623.6 7638 7233.5 8277.9 7845.4 7608.1 8419 8833 8525.3 TRUE FALSE FALSE 9066.254446 7858.47408 8050.933384 7528.513396 7667.255809 7695.762066 7901.546966 9377.384929 8468.900001 8474.591136 1.069816148 0.927298315 0.950008473 0.888363022 0.904734598 0.908098331 0.932380906 1.106529481 0.999328447 1 13.04892805 -7.252056361 24.73094129 1.032968737 0.939839409 0.249734184 0.060471399 495.3532446 1305608.91 0.010194172 0.01239598 5.60E-08 7.252056361 -0.093129328 GS(ph)QSYYTVAHAISER ddPTM_HeLa_CUDC101_4h_R1 1 GSQSYYTVAHAISER 15 0 P51531;P51531-2;F6VDE0;A0A0U1RQZ9;A0A0U1RQE1 P51531 SMARCA2 Probable global transcription activator SNF2L2 1 0 GS(0.56)QS(0.361)Y(0.077)Y(0.002)T(0.001)VAHAISER 72.315 0.022453 3771500 1249.8 1288.9 1243.8 1339 1265.7 1392.5 1157 1106.3 1457.3 1246.2 TRUE FALSE FALSE 1103.300339 1328.609481 1311.04359 1393.610208 1172.331833 1365.940383 1201.625878 1232.23672 1397.229477 1238.787547 0.890629181 1.072507941 1.058328035 1.124979187 0.946354228 1.102642972 0.97000158 0.994711905 1.12790081 1 10.27471307 -7.251935304 24.92538685 0.948352668 1.038880137 0 0.08153583 594.7200762 1559713.835 0.010670306 0.012978074 5.60E-08 7.251935304 0.090527468 MHDGELEEQEEDDEKS(ph)DSEGGDLDK ddPTM_HeLa_CUDC101_4h_R1 2 MHDGELEEQEEDDEKSDSEGGDLDK 25 1 Q9NU22 Q9NU22 MDN1 Midasin 1 0 MHDGELEEQEEDDEKS(0.764)DS(0.236)EGGDLDK;MHDGELEEQEEDDEKS(0.789)DS(0.211)EGGDLDK ; 100.85 1.88E-06 17110000 4686 2776.9 3047.7 3257 3478.2 3581.7 3496.3 2162.8 3172.4 3252.9 TRUE FALSE FALSE 4136.714184 2862.452998 3212.467881 3389.834538 3221.620116 3513.38504 3631.153462 2409.00441 3041.632329 3233.551606 1.279309777 0.885234982 0.9934797 1.048331665 0.996310097 1.086540581 1.122961345 0.745002617 0.940647529 1 11.65890392 -7.25171496 24.99211409 1.131896285 0.995431018 0.031812329 0.133390038 892.0596159 2292627.115 0.02309812 0.028099688 5.60E-08 7.25171496 -0.136465267 IKWGDAGAEYVVESTGVFTTMEK ddPTM_HeLa_CUDC101_4h_R1 1 IKWGDAGAEYVVESTGVFTTMEK 23 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 102.66 6.29E-05 9486500 2831.5 3251.3 2899.3 2961.7 4775.5 3584 3652 3873.6 3456.9 2145.6 FALSE FALSE TRUE 2499.595862 3351.468699 3056.044928 3082.490928 4423.220879 3515.641171 3792.858863 4314.554966 3314.405119 2132.837876 1.171957743 1.571365896 1.432853834 1.445253276 2.073866434 1.648339619 1.778315598 2.022917454 1.553988307 1 11.05855859 -6.628825803 0.486673232 1.006593398 1.947461166 0.475871628 0.231953757 0.27708379 0.13945535 0.050329441 0.104081989 2.35E-07 6.628825803 0.940867769 ILADLEEENRNLQAEYDR ddPTM_HeLa_CUDC101_4h_R1 1 ILADLEEENRNLQAEYDR 18 1 A0A075B6G3;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A087WV90;P11532-11;P11532;P11532-8;P11532-14;P11532-6;P11532-15;P11532-5;P11532-7;P11532-12;P11532-2;P11532-17;P11532-3;A0A5H1ZRP7;A0A5H1ZRP9;A0A5H1ZRQ1;A0A5H1ZRQ8;H0Y304 A0A075B6G3 DMD Dystrophin 0 0 74.783 0.0029601 0 360.42 420.52 328.46 432.43 438.92 297.04 358.99 367.97 464.52 241.11 FALSE FALSE TRUE 318.172114 433.4757228 346.2175411 450.0663645 406.5417461 291.3744569 372.8363646 409.8582174 445.372289 239.675867 1.327510016 1.808591446 1.444523996 1.877812607 1.696214772 1.215702109 1.555585755 1.710052091 1.858227508 1 7.904940841 -7.928562899 0.975882411 1.065830195 1.605376285 0 0.313833775 0.236968145 0.479989413 0.05313334 0.043738387 1.18E-08 7.928562899 0.53954609 ILAEGGGAK(ac)FK ddPTM_HeLa_CUDC101_4h_R1 2 ILAEGGGAKFK 11 1 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 1 ; ILAEGGGAK(1)FK;ILAEGGGAK(1)FK 144.65 0.0001468 1756690 2832.7 1907.71 1406.94 2027.85 2331.19 2802.7 1680.95 1798.34 1772.01 1669.78 FALSE TRUE FALSE 2500.6552 1966.484284 1483.003432 2110.554488 2159.222758 2749.243167 1745.784805 2003.055756 1698.966998 1659.848074 1.506556678 1.184737516 0.893457332 1.271534739 1.300855658 1.656322172 1.051773853 1.20677054 1.023567774 1 10.69683548 -9.666426785 1.528164964 1.000481198 1.292491892 0.176105257 0.203760762 0.529625719 2.232018348 0.154647865 0.034922926 2.16E-10 9.666426785 0.292010695 ILALCMGNHELYMR ddPTM_HeLa_CUDC101_4h_R1 4 ILALCMGNHELYMR 14 0 A0A2R8Y7M3;A0A2R8Y5S7;P35241-4;P35241;P35241-5;P26038 A0A2R8Y7M3;P26038 RDX;MSN Radixin;Moesin 0 0 ;;; ;;; 105.66 0.0031683 3850730 83.382 0 0 87.746 81.534 0 147.446 0 100.8 0 FALSE FALSE TRUE 73.60808836 0 0 91.32466115 75.51939926 0 153.1330416 0 96.64498134 0 0 LIIESPSNTSS(ph)TEPA ddPTM_HeLa_CUDC101_4h_R1 1 LIIESPSNTSSTEPA 15 0 P38432 P38432 COIL Coilin 1 0 LIIESPS(0.002)NT(0.022)S(0.306)S(0.525)T(0.145)EPA 90.412 0.011094 4325000 1678.1 976.74 795.24 1195.2 1096.4 1378.8 958.02 869.09 1341 1231.7 TRUE FALSE FALSE 1481.395662 1006.832202 838.2330799 1243.945422 1015.520756 1352.501687 994.9711523 968.0236926 1285.723412 1224.373794 1.209921079 0.822324201 0.684621873 1.015985011 0.829420526 1.104647694 0.81263676 0.790627583 1.050106936 1 10.25782836 -7.251621519 24.92094954 1.099129399 0.870311642 0.406474112 0.121971424 492.2561808 1249507.959 0.022044656 0.026826233 5.60E-08 7.251621519 -0.228817758 KS(ph)T(ph)TMDRRK ddPTM_HeLa_CUDC101_4h_R1 1 KSTTMDRRK 9 3 P13349 P13349 MYF5 Myogenic factor 5 2 0 KS(0.884)T(0.91)T(0.206)MDRRK 74.944 0.0024281 0 1802.9 2113.2 2005.1 1800.3 2232.1 2161.2 2124.2 1980.5 1855.9 1925.2 TRUE FALSE FALSE 1591.566795 2178.305187 2113.501771 1873.724016 2067.44243 2119.978711 2206.131106 2205.952115 1779.399016 1913.748825 0.831648738 1.138239856 1.104377828 0.979085652 1.080310228 1.107762254 1.152779862 1.152686333 0.929797575 1 10.90218578 -7.251483661 24.84570762 0.920500792 1.098847768 0.655113549 0.060379556 361.3524842 901799.3919 0.013135005 0.015985572 5.60E-08 7.251483661 0.178346976 ILDEIEEHNIK ddPTM_HeLa_CUDC101_4h_R1 2 ILDEIEEHNIK 11 0 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C2Y0;C9J2Q4 B5MCX3 2-Sep Septin-2 0 0 ; ; 128.08 0.0023065 13365000 10983.3 10320.7 9735.5 8989.9 10181.4 10222.3 9052.6 9775.7 9723 10791.9 FALSE FALSE TRUE 9695.854224 10638.66853 10261.83058 9356.54698 9430.338406 10027.32666 9401.761814 10888.52617 9322.213825 10727.7093 0.903814035 0.991699928 0.956572395 0.872184986 0.879063567 0.93471275 0.876399756 1.014990793 0.868984567 1 13.38905443 -6.359238738 13.57405485 0.956947841 0.912348901 0.040370491 0.053545204 1.71047718 233.098886 0.007847121 0.011986835 4.37E-07 6.359238738 -0.04459894 (ac)AVSVT(ph)PIRDTK ddPTM_HeLa_CUDC101_4h_R1 1 AVSVTPIRDTK 11 1 C9JP00;A0A0A0MQX8;Q9NR56-3;Q9NR56-4;Q9NR56-7;Q9NR56-6;Q9NR56-2;Q9NR56-5;Q9NR56 C9JP00 MBNL1 Muscleblind-like protein 1 1 0 AVS(0.006)VT(0.968)PIRDT(0.026)K 60.255 0.023524 10295000 1324 1470.5 1353.2 1446.4 2043.6 1517.6 1665.8 918.55 1314.6 1191.3 TRUE FALSE FALSE 1168.802727 1515.804362 1426.358085 1505.390444 1892.847699 1488.654308 1730.050464 1023.114019 1260.411632 1184.214095 0.986985995 1.280008715 1.204476531 1.271214767 1.598399908 1.257082073 1.460927101 0.863960346 1.064344393 1 10.20971421 -7.251428461 6.524375979 0.993605222 1.29290013 0.300932236 0.17898086 0.111812699 24.54821301 0.027929901 0.033371049 5.60E-08 7.251428461 0.299294907 ILDSVGIEADDDR ddPTM_HeLa_CUDC101_4h_R1 2 ILDSVGIEADDDR 13 0 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 0 ; ; 263.3 2.53E-69 180483000 3422.6 2511.8 2477.9 2679.3 2523.2 2181.08 2293.7 2311.17 2542 3378.2 FALSE FALSE TRUE 3021.408016 2589.185581 2611.862769 2788.573435 2337.068563 2139.479533 2382.168777 2574.264251 2437.217684 3358.106316 0.899735664 0.771025494 0.777778463 0.830400581 0.695948354 0.637108933 0.709378606 0.766582118 0.725771448 1 11.71343219 -7.248830596 0.523164489 0.992445028 0.695380014 0.111161842 0.094717548 0.212514745 0.136205616 0.018124354 0.021672231 5.64E-08 7.248830596 -0.297065014 ILDSVGIEADDDRLNK ddPTM_HeLa_CUDC101_4h_R1 2 ILDSVGIEADDDRLNK 16 1 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 0 ; ; 193.98 4.77E-16 271440000 6651 5864.7 5732.7 5311.1 6351.3 6031.4 6056.1 6258.6 6315.8 6415.9 FALSE FALSE TRUE 5871.379862 6045.384456 6042.627102 5527.709615 5882.777253 5916.361094 6289.685806 6971.053726 6055.460051 6377.737941 0.92060538 0.947888501 0.94745616 0.866719465 0.922392439 0.927658231 0.98619383 1.093029188 0.949468308 1 12.6388291 -4.313392074 2.879022285 0.948153743 1.109927366 0.657975916 0.033576701 0.223096836 2.744694851 0.006048875 0.078561994 4.86E-05 4.313392074 0.161773623 GTENEDAGS(ph)DYQSDNQASWIHR ddPTM_HeLa_CUDC101_4h_R1 1 GTENEDAGSDYQSDNQASWIHR 22 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 GT(0.001)ENEDAGS(0.999)DYQSDNQASWIHR 114.84 4.92E-06 4650200 2779.1 1989.2 2022.1 2020.4 2024.8 1745.6 1779.3 2308.4 2478.5 2513.2 TRUE FALSE FALSE 2453.338111 2050.484894 2131.420843 2102.800645 1875.434538 1712.305588 1847.928197 2571.178925 2376.335181 2498.251375 0.98202212 0.820768044 0.853165083 0.841708991 0.750698892 0.68540164 0.739688654 1.029191438 0.951199389 1 11.28670293 -7.251355111 3.291604181 0.992955282 0.80671686 0.406370312 0.087837078 0.152755085 3.398033712 0.014888996 0.01770962 5.61E-08 7.251355111 -0.186238423 ILDWHVANTDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 ILDWHVANTDKK 12 1 P37837;F2Z393 P37837 TALDO1 Transaldolase 0 1 ; ILDWHVANTDK(1)K;ILDWHVANTDK(1)K 138.42 0.0002534 3938700 7542.6 2666.5 2583.7 2434.8 7259.1 5395.8 6539.5 4766.3 5540.6 4411.1 FALSE TRUE FALSE 6658.467862 2748.651704 2723.382637 2534.101668 6723.610655 5292.884105 6791.730706 5308.876326 5312.214123 4384.862581 1.518512323 0.626850136 0.62108734 0.57792043 1.533368613 1.207080953 1.548903889 1.210728096 1.211489305 1 12.09831591 QSAGPNS(ph)PTGGGGGGGSGGTR ddPTM_HeLa_CUDC101_4h_R1 2 QSAGPNSPTGGGGGGGSGGTR 21 0 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 QSAGPNS(0.648)PT(0.352)GGGGGGGSGGTR;QS(0.337)AGPNS(0.453)PT(0.209)GGGGGGGSGGTR ; 212 3.37E-26 15532200 1755.39 1328.18 1106.15 1278.94 1640.46 1200.44 1569.26 1263.41 1387.38 1485.79 TRUE FALSE FALSE 1549.625845 1369.099652 1165.951815 1331.100701 1519.446534 1177.543607 1629.786884 1407.231488 1330.191609 1476.952455 1.049204963 0.926976117 0.789430838 0.901248173 1.02877146 0.797279292 1.103479586 0.952794034 0.900632654 1 10.52840767 -7.251270485 23.11996878 1.023235676 0.927697982 0.015481307 0.097374323 298.7500869 679236.4066 0.014603757 0.017758023 5.61E-08 7.251270485 -0.095537694 ILEDSGFDEQQEFR ddPTM_HeLa_CUDC101_4h_R1 1 ILEDSGFDEQQEFR 14 0 A0A3B3IRT3;O60343-2;O60343-3;O60343 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 0 0 132.56 0.0041839 1942700 4868.7 4587.3 3980.8 3978.8 5299.8 3356.1 4284.8 3480.9 1619.3 522.66 FALSE FALSE TRUE 4297.998366 4728.629276 4196.014089 4141.072662 4908.844313 3292.087984 4450.066171 3877.151586 1552.551769 519.5511951 8.272521375 9.101373109 8.076228347 7.970480486 9.448239864 6.336407298 8.565212078 7.462501525 2.988255601 1 9.021122105 -9.124536839 0.731110872 0.619820788 8.219262811 0.851586014 1.013910256 0.163097611 0.146854015 0.735270328 0.179172321 7.51E-10 9.124536839 7.599442023 LSLEGDHSTPPSAY(ph)GSVK ddPTM_HeLa_CUDC101_4h_R1 1 LSLEGDHSTPPSAYGSVK 18 0 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4;H0YMW4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LSLEGDHSTPPS(0.012)AY(0.626)GS(0.362)VK 115.66 0.0016359 9699500 5426.2 1559.4 1490.9 1424.6 3450 2064 1131.6 626.07 3643 3345.2 TRUE FALSE FALSE 4790.149062 1607.443266 1571.502564 1482.701346 3195.500373 2024.632639 1175.246191 697.3392781 3492.833998 3325.302602 1.440515236 0.483397591 0.472589341 0.445884638 0.960965288 0.608856661 0.353425337 0.209707014 1.050380797 1 11.69926992 -7.251125468 24.92821546 1.208021083 0.517161468 0.664195008 0.213796984 315.0669323 761501.6269 0.041366725 0.050366892 5.61E-08 7.251125468 -0.690859615 LSLEGDHS(ph)TPPSAYGSVK ddPTM_HeLa_CUDC101_4h_R1 1 LSLEGDHSTPPSAYGSVK 18 0 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4;H0YMW4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LS(0.384)LEGDHS(0.608)T(0.008)PPSAYGSVK 96.234 0.0020697 463010000 5715.4 2648 2125.2 1564.1 4138.5 3491.9 4279.2 4546.9 3610.3 3490.1 TRUE FALSE FALSE 5045.449476 2729.581741 2240.09474 1627.890759 3833.2111 3425.297825 4444.250177 5064.500717 3461.481906 3469.34073 1.454296326 0.78677246 0.645683118 0.469221932 1.104881705 0.987305108 1.28100712 1.45978764 0.997734779 1 11.76044582 -7.251047953 24.97095353 1.214528823 0.949695244 0.064122516 0.299297804 1146.97209 2756215.132 0.056095487 0.06830773 5.61E-08 7.251047953 -0.264833579 LLPPVGTGRS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 LLPPVGTGRSPR 12 1 Q9NWZ5;Q9NWZ5-3;Q9NWZ5-2;Q9NWZ5-4 Q9NWZ5;Q9NWZ5-4 UCKL1 Uridine-cytidine kinase-like 1 1 0 LLPPVGT(0.001)GRS(0.999)PR;LLPPVGT(0.003)GRS(0.997)PR ; 122.78 0.0016312 78794000 8956.2 9621 8898.4 9144.7 9661.2 9206.6 8627.2 8900.1 8847.4 9422.1 TRUE FALSE FALSE 7906.367813 9917.411606 9379.47442 9517.660393 8948.512524 9030.999444 8959.953994 9913.251409 8482.706427 9366.05693 0.844151159 1.058867321 1.001432565 1.016186477 0.955419403 0.964226409 0.956640992 1.058423142 0.905685978 1 13.19322609 -7.251030196 24.99526353 0.926404713 0.997211334 0.370829522 0.050017927 853.8086343 2050226.631 0.011034604 0.013435658 5.61E-08 7.251030196 0.070806622 QAS(ph)LDGLQQLR ddPTM_HeLa_CUDC101_4h_R1 2 QASLDGLQQLR 11 0 Q3MII6 Q3MII6 TBC1D25 TBC1 domain family member 25 1 0 QAS(1)LDGLQQLR;QAS(1)LDGLQQLR ; 147.39 0.00089441 58530000 2041.57 1232.08 1096.56 1371.57 1241.28 1455.14 1417.76 1629.7 1672.43 1473.4 TRUE FALSE FALSE 1802.260259 1270.038924 1155.843351 1427.508553 1149.713247 1427.385629 1472.443478 1815.218461 1603.491728 1464.636151 1.230517394 0.86713613 0.789167569 0.974650634 0.784982158 0.974566706 1.005330557 1.239364779 1.094805509 1 10.5163266 -7.251011045 24.86023463 1.108855437 0.939780509 0.234464565 0.132380551 741.520218 1767719.845 0.024641888 0.030002809 5.61E-08 7.251011045 -0.169074929 ILENEKDLEEAEEYK ddPTM_HeLa_CUDC101_4h_R1 3 ILENEKDLEEAEEYK 15 1 E5RJD8;E5RHG6;O75347;E5RIW3 E5RJD8 TBCA Tubulin-specific chaperone A 0 0 ;; ;; 133.48 6.19E-05 21987800 5480.14 4397.39 4569.91 4529.08 4734.78 5303.47 4591.86 5386.71 5181.82 5332.26 FALSE FALSE TRUE 4837.766297 4532.868374 4816.973158 4713.795459 4385.504712 5202.315146 4768.969578 5999.911293 4968.223186 5300.54348 0.912692503 0.855170492 0.908769672 0.889304177 0.827368878 0.981468252 0.899713321 1.131942661 0.937304487 1 12.37192458 -4.255533345 24.77938629 0.932932181 1.131942759 0.585150616 0.052975297 398.9293483 1673696.037 0.008716002 0.103897967 5.55E-05 4.255533345 0.199010578 ILENEKDLEEAEEYKEAR ddPTM_HeLa_CUDC101_4h_R1 2 ILENEKDLEEAEEYKEAR 18 2 E5RJD8;E5RHG6;O75347;E5RIW3 E5RJD8 TBCA Tubulin-specific chaperone A 0 0 ; ; 66.387 0.012205 54988000 4530.8 4148 4277.2 4189.8 4705.4 4200.8 4549.8 5053 4760.2 4845.4 FALSE FALSE TRUE 3999.706492 4275.794963 4508.43837 4360.678154 4358.292016 4120.676739 4725.28731 5628.213095 4563.982541 4816.579345 0.830403946 0.88772439 0.936024935 0.905347518 0.904852117 0.855519331 0.981046293 1.168508332 0.947556806 1 12.23379322 -4.322701647 3.050295582 0.911639547 1.192403708 0.748608768 0.04536454 0.165844689 2.391815343 0.008969649 0.10305509 4.76E-05 4.322701647 0.280764161 VRPAS(ph)TGGLSLLPPPPGGK ddPTM_HeLa_CUDC101_4h_R1 2 VRPASTGGLSLLPPPPGGK 19 1 D6RB24;Q9NVZ3-4;Q9NVZ3;Q9NVZ3-2 D6RB24 NECAP2 Adaptin ear-binding coat-associated protein 2 1 0 VRPAS(0.665)T(0.254)GGLS(0.081)LLPPPPGGK;VRPAS(0.628)T(0.276)GGLS(0.096)LLPPPPGGK ; 97.488 0.0065949 67108000 4241.5 4759.2 4719.2 3863.8 5838.4 5853.6 4769.2 4042.5 4246.7 4196.5 TRUE FALSE FALSE 3744.3178 4905.825311 4974.334227 4021.382465 5407.712864 5741.952333 4953.149642 4502.68186 4071.649229 4171.539031 0.897586663 1.176022872 1.192445807 0.964004516 1.296335195 1.376458973 1.187367445 1.079381453 0.976054448 1 12.02636403 -7.2509089 23.08582501 0.951638148 1.1858716 0.477024998 0.107279987 158.0274224 346440.8246 0.018834239 0.022913835 5.61E-08 7.2509089 0.234233452 S(ph)VDEVNYWDK ddPTM_HeLa_CUDC101_4h_R1 3 SVDEVNYWDK 10 0 F5H5P2;P12694;P12694-2;F5GXU9 F5H5P2 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" 1 0 S(1)VDEVNYWDK;S(1)VDEVNYWDK;S(1)VDEVNYWDK ;; 143.55 0.00091988 78353000 9798.6 6173.2 5984.5 6193.7 5401.1 7120.7 7869.8 6857.5 7289.8 7376.7 TRUE FALSE FALSE 8650.022962 6363.388975 6308.040172 6446.305857 5002.671614 6984.884511 8173.340822 7638.130081 6989.311359 7332.82306 1.179630668 0.867795244 0.860247155 0.879102878 0.682229964 0.952550533 1.114624034 1.041635673 0.953154236 1 12.84015301 -7.250746956 24.89993073 1.084825594 0.910896574 0.168031827 0.123116097 674.7791776 1571389.632 0.022313651 0.027174564 5.61E-08 7.250746956 -0.17392902 S(ph)LSTSGESLYHVLGLDK ddPTM_HeLa_CUDC101_4h_R1 1 SLSTSGESLYHVLGLDK 17 0 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 0 S(0.587)LS(0.412)T(0.001)SGESLYHVLGLDK 153.68 5.58E-05 40412000 5819.4 1896.2 1589.4 1822.1 4079.7 3867.2 2782.6 2270.7 3058 3023.5 TRUE FALSE FALSE 5137.258754 1954.619674 1675.327772 1896.413114 3778.748659 3793.439603 2889.925814 2529.18731 2931.947946 3005.516088 1.709276744 0.650344106 0.557417669 0.630977529 1.257271147 1.262159141 0.961540624 0.841515146 0.975522293 1 11.55339703 -7.250610619 24.99604124 1.334936245 0.890501628 0.196548099 0.29959312 753.3537174 1738968.434 0.05981278 0.072869379 5.62E-08 7.250610619 -0.444434617 ILEPDDFLDDLDDEDYEEDTPKR ddPTM_HeLa_CUDC101_4h_R1 2 ILEPDDFLDDLDDEDYEEDTPKR 23 1 J3KMZ8;Q92785 J3KMZ8 DPF2 Zinc finger protein ubi-d4 0 0 ; ; 185.23 1.06E-13 21514000 3881.2 3316.6 3066.4 3012.2 3823.6 2985 3497 3560.1 3684.9 2914.6 FALSE FALSE TRUE 3426.25162 3418.780515 3232.178859 3135.050536 3541.540646 2928.066098 3631.880461 3965.367394 3533.006862 2897.26383 1.18258185 1.180003174 1.115597008 1.082072852 1.222374231 1.010631503 1.253555311 1.368659407 1.219428768 1 11.50047535 -13.52287875 0.157921708 0.347240688 1.230382162 0 0.111015717 53.93088377 0.570921361 10.97979821 0.183645057 3.00E-14 13.52287875 0.883141474 TPS(ph)PAAEDAREPEAK ddPTM_HeLa_CUDC101_4h_R1 1 TPSPAAEDAREPEAK 15 1 Q92797 Q92797 SYMPK Symplekin 1 0 T(0.489)PS(0.511)PAAEDAREPEAK 125.86 0.0002516 0 1994.3 980.55 1077 1344.8 1260.3 1525.4 1185.7 641.77 974.43 1256.8 TRUE FALSE FALSE 1760.531177 1010.759583 1135.225878 1399.646757 1167.33018 1496.305536 1231.432846 714.8265027 934.263583 1249.324498 1.409186469 0.809044876 0.90867175 1.12032283 0.934369079 1.197691664 0.98567894 0.572170404 0.747814987 1 10.28693253 -7.250486644 24.98315195 1.193226947 0.951176269 0 0.232136547 827.8016866 1888213.646 0.035821836 0.043644322 5.62E-08 7.250486644 -0.242050678 AGPDLPSLPSHALEDEGWAAAAPS(ph)PGS(ph)AR ddPTM_HeLa_CUDC101_4h_R1 2 AGPDLPSLPSHALEDEGWAAAAPSPGSAR 29 0 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 2 0 AGPDLPSLPS(0.001)HALEDEGWAAAAPS(1)PGS(0.999)AR;AGPDLPS(0.001)LPS(0.005)HALEDEGWAAAAPS(0.994)PGS(1)AR ; 73.107 0.00017196 18219900 3373.4 2326.95 2065.49 2119.47 2805.27 2452.79 2538.23 2225.03 2754.5 2725.4 TRUE FALSE FALSE 2977.975166 2398.640571 2177.156637 2205.911148 2598.330821 2406.007117 2636.130381 2478.318421 2640.958344 2709.1892 1.099212697 0.885372115 0.803619266 0.814232962 0.959080607 0.888091211 0.973032958 0.914782335 0.974815028 1 11.40364543 -7.250386189 24.50841997 1.04685044 0.890488121 0.50225121 0.059688884 297.428127 659492.4809 0.01073832 0.013081996 5.62E-08 7.250386189 -0.156362319 ILEVHIDK ddPTM_HeLa_CUDC101_4h_R1 1 ILEVHIDK 8 0 P31689;P31689-2 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 0 91.318 0.015847 1927500 3961 4374.2 3624.4 3946.4 3972.3 3527.5 3559.4 3355.4 4301.8 3558.4 FALSE FALSE TRUE 3496.697584 4508.963917 3820.346027 4107.35125 3679.271343 3460.218815 3696.68725 3737.365173 4124.477983 3537.234479 0.988539947 1.274714454 1.080037541 1.161175849 1.040154778 0.978227153 1.045078372 1.056578295 1.166017692 1 11.78840614 ILGADTSVDLEETGR ddPTM_HeLa_CUDC101_4h_R1 4 ILGADTSVDLEETGR 15 0 P25705;P25705-2;P25705-3;K7ERX7;K7EK77;K7ESA0;K7EQH4;K7EJP1 P25705 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 0 ;;; ;;; 285.32 1.43E-102 57778000 4273.82 3907.23 3154.26 3571.68 4226.04 4045.9 3210.07 3313.07 3815.54 3660.71 FALSE FALSE TRUE 3772.849298 4027.607125 3324.788837 3717.348549 3914.293449 3968.731198 3333.883475 3690.216497 3658.261826 3638.935934 1.036800143 1.106809023 0.913670616 1.021548226 1.075669789 1.090629588 0.916169874 1.014092186 1.005310864 1 11.82930094 -4.751576554 24.99846588 1.025090751 0.965131066 0.173471443 0.056489606 282.261289 715409.3472 0.007504264 0.02737765 1.77E-05 4.751576554 -0.059959685 FIHQQPQSSS(ph)PVYGSSAK ddPTM_HeLa_CUDC101_4h_R1 2 FIHQQPQSSSPVYGSSAK 18 0 F5GZ78;A0A1B0GTU4;P49023;P49023-2;P49023-3;A0A1B0GU60;F5H836 F5GZ78 PXN Paxillin 1 0 FIHQQPQS(0.003)S(0.175)S(0.822)PVYGSSAK;FIHQQPQS(0.004)S(0.177)S(0.819)PVYGSSAK ; 140.2 5.04E-05 411340000 21091 16775.6 16401.9 15894.5 20931 17640.7 16529.5 15031 19265.9 18014.4 TRUE FALSE FALSE 18618.74495 17292.43635 17288.63633 16542.74641 19386.96183 17304.23304 17167.04835 16742.06828 18471.75145 17907.24955 1.039732255 0.965666799 0.965454593 0.923801635 1.082632024 0.966325565 0.958664719 0.934932427 1.031523652 1 14.12825614 -7.250188466 24.15595915 1.018762454 0.972665837 0.250136759 0.041467955 546.9352862 1174282.892 0.006967192 0.008489487 5.62E-08 7.250188466 -0.046096616 SFS(ph)ADNFIGIQR ddPTM_HeLa_CUDC101_4h_R1 1 SFSADNFIGIQR 12 0 Q8N7R7-3;Q8N7R7-2;Q8N7R7 Q8N7R7-3 CCNYL1 Cyclin-Y-like protein 1 1 0 S(0.1)FS(0.9)ADNFIGIQR 126.48 0.0022734 10264000 1273.6 955.92 850.61 853.42 905.06 1360.1 1149.8 615.07 920.65 1073.3 TRUE FALSE FALSE 1124.310539 985.3707622 896.5965496 888.2261564 838.2955269 1334.158359 1194.148171 685.0870826 882.7004173 1066.915964 1.053794841 0.923569236 0.840362859 0.832517449 0.785718421 1.250481204 1.119252323 0.642119066 0.827338279 1 10.05923083 -7.249978086 21.75269141 1.025403117 0.92347666 0 0.172991935 265.8694832 504598.4059 0.026999056 0.032855675 5.62E-08 7.249978086 -0.101926457 ILHRDMK(ac)PQNILLAK ddPTM_HeLa_CUDC101_4h_R1 1 ILHRDMKPQNILLAK 15 2 C9JDA4;Q9NRP7-2;Q9NRP7 C9JDA4 STK36 Serine/threonine-protein kinase 36 0 1 ILHRDMK(1)PQNILLAK 46.746 0.03862 2052200 127.22 895.88 1414 2270.7 790.83 1028.9 1075 829.16 60.025 155.06 FALSE TRUE FALSE 112.3074645 923.4810009 1490.445117 2363.308961 732.4920465 1009.275447 1116.46311 923.5482228 57.55074409 154.1376962 0.72861777 5.991272891 9.669569182 15.33245286 4.752192776 6.547882001 7.243284008 5.991709007 0.373372287 1 7.268075923 -7.138998 3.379212288 0.859842465 8.274625323 0.604628137 2.725251758 0.125985754 2.678012631 0.474081302 0.586539902 7.26E-08 7.138998 7.414782858 ILISLATGHR ddPTM_HeLa_CUDC101_4h_R1 1 ILISLATGHR 10 0 P08133-2;P08133;E7EMC6;E5RK69 P08133-2 ANXA6 Annexin A6;Annexin 0 0 131.52 0.0010828 821180 917.25 617.69 408.14 559.44 638.64 538.33 453.15 382.06 476.01 451.21 FALSE FALSE TRUE 809.7313455 636.7202968 430.205283 582.2563813 591.5287996 528.0622522 470.6281473 425.5521661 456.3886663 448.5261829 1.805315668 1.41958334 0.959153109 1.29815472 1.318827801 1.177327595 1.049276866 0.948778873 1.017529598 1 8.809048395 -4.660194346 0.713821 1.364238551 0.813142174 0.077452562 0.246010237 2.68182605 1.315806531 0.055916029 1.060135464 2.19E-05 4.660194346 -0.551096378 YLSVPPSPNISTSES(ph)RSPPEGDTTLFLSR ddPTM_HeLa_CUDC101_4h_R1 1 YLSVPPSPNISTSESRSPPEGDTTLFLSR 29 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 YLS(0.003)VPPS(0.013)PNIS(0.049)T(0.049)S(0.049)ES(0.434)RS(0.315)PPEGDT(0.066)T(0.02)LFLSR 63.109 0.00078166 44197000 1456.3 1557.8 1565.4 1368.1 1756.8 1611.8 1435 1108.6 1699.7 1521.7 TRUE FALSE FALSE 1285.594722 1605.793972 1650.030259 1423.897031 1627.204364 1581.0576 1490.348431 1234.798543 1629.637647 1512.648861 0.849896334 1.061577484 1.090821738 0.941326879 1.075731722 1.045224468 0.985257365 0.816315389 1.077340346 1 10.56286141 -7.249960356 24.93624496 0.929117712 1.007197201 0 0.095194399 1092.277939 2372790.824 0.015307321 0.01866545 5.62E-08 7.249960356 0.078079489 ILK(ac)CAGNEDIITLR ddPTM_HeLa_CUDC101_4h_R1 1 ILKCAGNEDIITLR 14 1 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 1 ILK(1)CAGNEDIITLR 124.86 0.0024153 0 0 0 0 0 68.419 75.648 0 0 82.485 0 FALSE TRUE FALSE 0 0 0 0 63.37186668 74.20514044 0 0 79.08493339 0 0 FGSTGST(ph)PPVS(ph)PTPSER ddPTM_HeLa_CUDC101_4h_R1 2 FGSTGSTPPVSPTPSER 17 0 A0A087WU73;W0Z7M9;B0QY83;A0A499FIJ6;Q969V6;E7ER32;A0A087X287;A0A494BZX7 A0A087WU73 MKL1;mkl1 MKL/myocardin-like protein 1 2 0 FGS(0.021)T(0.128)GS(0.364)T(0.487)PPVS(0.542)PT(0.338)PS(0.12)ER;FGS(0.002)T(0.029)GS(0.025)T(0.955)PPVS(0.986)PT(0.002)PS(0.001)ER ; 135.57 0.00084685 87267000 14341.8 14085.8 12909.5 13780.1 16422.8 14761.6 13484.2 12099.6 13953.6 13852.1 TRUE FALSE FALSE 12660.67594 14519.7668 13607.42662 14342.11204 15211.32276 14480.04707 14004.29011 13476.96956 13378.4267 13769.70709 0.919458625 1.054471726 0.988214675 1.041569871 1.104694723 1.051587153 1.017036166 0.978740467 0.971583971 1 13.74921025 -7.249941813 24.73135433 0.961966572 1.03507873 0.413818596 0.038182294 512.8130401 1103064.854 0.007519845 0.009166964 5.62E-08 7.249941813 0.073112157 GSGS(ph)PTHSLSQK ddPTM_HeLa_CUDC101_4h_R1 2 GSGSPTHSLSQK 12 0 I3L419;I3L156;Q9BSJ6-2;Q9BSJ6;I3L2R2 I3L419 FAM64A Protein FAM64A 1 0 GS(0.001)GS(0.995)PT(0.004)HS(0.001)LSQK;GSGS(0.956)PT(0.044)HSLSQK ; 198.74 2.82E-16 190302000 12065.6 7054.6 7181.7 6408.2 10040.6 7384.8 8370.4 5550.8 9028.5 8795.9 TRUE FALSE FALSE 10651.28866 7271.943864 7569.964425 6669.554095 9299.924942 7243.947244 8693.249132 6182.680635 8656.341409 8743.581596 1.218183709 0.831689369 0.865773864 0.762794288 1.06362877 0.828487407 0.994243496 0.707110761 0.990022374 1 13.09400865 -7.249778086 24.99213248 1.103031197 0.872158136 0.391052183 0.11445483 492.2202624 1054912.104 0.019681748 0.024000879 5.63E-08 7.249778086 -0.230873061 EPGEQASVPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 EPGEQASVPLSPK 13 0 P42858 P42858 HTT Huntingtin 1 0 EPGEQASVPLS(1)PK 164.41 2.91E-05 31118000 4939.4 2997 3158.3 3531.4 3544.5 3759.6 2910 2753.3 3250 3560.9 TRUE FALSE FALSE 4360.41102 3089.334018 3329.047251 3675.425756 3283.029297 3687.891894 3022.239675 3066.724543 3116.033624 3539.719608 1.231852096 0.872762354 0.940483321 1.038338107 0.927482869 1.041859893 0.853807648 0.866374991 0.880305213 1 11.78941937 -7.249596796 24.93987381 1.109485714 0.939434591 0.052502685 0.108173949 572.5556516 1205773.813 0.017271968 0.021059308 5.63E-08 7.249596796 -0.170051123 ILMVGLDAAGK ddPTM_HeLa_CUDC101_4h_R1 2 ILMVGLDAAGK 11 0 F5H423;P84077;P61204;C9J1Z8;P61204-2;F5H0C7;C9JPM4;P18085;F5H1V1;F5H6T5;F8WDB3;P84085 F5H423;P84085 ARF1;ARF3;ARF5;ARF4 ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 4;ADP-ribosylation factor 5 0 0 ; ; 132.01 0.0083676 531360 781.91 962.22 781.53 585.51 800.96 604.901 815.14 750.24 810.85 723.69 FALSE FALSE TRUE 690.2556951 991.8648577 823.7818758 609.3896286 741.8747765 593.3635213 846.5802229 835.644289 777.4264198 719.3854597 0.959507432 1.378766897 1.145118885 0.847097506 1.031261845 0.824820009 1.176810306 1.161608534 1.080681308 1 9.49062119 SPEKIEEVLSPEGSPSKSPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 SPEKIEEVLSPEGSPSKSPSK 21 2 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 SPEKIEEVLS(0.038)PEGS(0.291)PS(0.079)KS(0.207)PS(0.385)K 69.99 0.0040214 46008000 1064.9 1320.1 1288 1009 1421.6 1156.1 1111.4 1519.1 1072.2 1223.9 TRUE FALSE FALSE 940.0740363 1360.770716 1357.633176 1050.151381 1316.7314 1134.049319 1154.26707 1692.028204 1028.003462 1216.620188 0.772693109 1.118484412 1.115905513 0.863171096 1.082286331 0.932130939 0.948748904 1.390761241 0.844966631 1 10.24866313 -7.249580365 24.83615239 0.892660633 1.049873388 0.259129215 0.146102265 863.3968478 1808200.363 0.025328375 0.030885237 5.63E-08 7.249580365 0.157212755 WLLES(ph)TDNK ddPTM_HeLa_CUDC101_4h_R1 1 WLLESTDNK 9 0 Q9NTK5-3 Q9NTK5-3 OLA1 Obg-like ATPase 1 1 0 WLLES(0.844)T(0.156)DNK 74.533 0.035996 21001000 4381.4 5023 5157.3 4595.6 5325 5047 4946.5 4586 5215.6 4620.5 TRUE FALSE FALSE 3867.818934 5177.752676 5436.119238 4783.028432 4932.185359 4950.736884 5137.288162 5108.051703 5000.61076 4593.017061 0.842108549 1.127309698 1.183561734 1.04136962 1.073844337 1.077883408 1.118499691 1.112134276 1.088742039 1 12.16522643 -7.249271625 24.90765154 0.925440148 1.103806432 0.337719893 0.071998255 354.7111629 726101.6077 0.011297729 0.01378074 5.63E-08 7.249271625 0.178366284 ILQFEDILANTFYR ddPTM_HeLa_CUDC101_4h_R1 1 ILQFEDILANTFYR 14 0 A0A494C0S0;Q9H3E2-2;Q9H3E2 A0A494C0S0 SNX25 Sorting nexin-25 0 0 85.554 0.017968 5206100 2361 1701.9 1963.2 1951.6 2283.8 2009.4 1988.6 2101.8 2201.8 1839.2 FALSE FALSE TRUE 2084.247159 1754.333522 2069.33653 2031.194684 2115.328624 1971.074043 2065.300968 2341.060416 2111.040872 1828.260357 1.140016602 0.959564383 1.131860964 1.110998593 1.15701717 1.078114523 1.129653641 1.280485248 1.154671907 1 10.83625582 -1 0.016376627 2.94E-09 2.482290322 0.153599894 0.077304918 3279.883757 4.187865963 249.3360387 402.8538843 0.1 1 2.482290319 ILQHKDELNADHPFIYIIR ddPTM_HeLa_CUDC101_4h_R1 2 ILQHKDELNADHPFIYIIR 19 1 P36952 P36952 SERPINB5 Serpin B5 0 0 ; ; 101.04 0.0004779 67153000 5824.3 5231.2 5072.1 5853.9 4959.6 5074.9 5580.1 4698 5178.2 5509.3 FALSE FALSE TRUE 5141.584383 5392.367072 5346.313068 6092.647345 4593.740189 4978.104738 5795.326326 5232.80133 4964.752404 5476.530439 0.938839735 0.984631991 0.976222652 1.112501321 0.838804831 0.908988783 1.058211287 0.955495708 0.906550682 1 12.41904647 -4.753123156 24.9938099 0.969191513 1.006853446 0.05101292 0.072470769 503.5503043 1513347.671 0.009383431 0.033978761 1.77E-05 4.753123156 0.037661933 ILQK(ac)QGFK ddPTM_HeLa_CUDC101_4h_R1 2 ILQKQGFK 8 1 E9PEX6;P09622-2;P09622-3;P09622 E9PEX6 DLD "Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial" 0 1 ; ILQK(1)QGFK;ILQK(1)QGFK 101.99 0.012342 1157780 1452.98 679.34 370.1 694.52 636.87 552.13 434.6 403.44 215.777 0 FALSE TRUE FALSE 1282.663887 700.2696602 390.1087255 722.8455276 589.8893689 541.5990402 451.3626676 449.3659788 206.8825807 0 0 ILQLCMGNHELYMR ddPTM_HeLa_CUDC101_4h_R1 2 ILQLCMGNHELYMR 14 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ; ; 60.401 0.028333 2738700 75.737 138.72 0 144.05 0 0 78.862 0 0 0 FALSE FALSE TRUE 66.85922367 142.9937988 0 149.9249816 0 0 81.90373376 0 0 0 0 S(ph)T(ph)S(ph)QQGEES(ph)KK ddPTM_HeLa_CUDC101_4h_R1 1 STSQQGEESKK 11 1 A0A0A0MR68;O14994 A0A0A0MR68 SYN3 Synapsin-3 4 0 S(1)T(1)S(1)QQGEES(1)KK 58.626 0.025977 8749100 8675.2 6601.1 5930.2 6687.8 6991.1 7096.6 6853.8 7139.3 7210.3 7207.8 TRUE FALSE FALSE 7658.306207 6804.472067 6250.80455 6960.557391 6475.380481 6961.244179 7118.153362 7952.009054 6913.088382 7164.927685 1.068860223 0.94969166 0.872416977 0.971476294 0.903760759 0.971572148 0.993471766 1.109851963 0.964851103 1 12.80673643 -7.249142738 24.57209666 1.032517328 0.962670099 0.056904586 0.064427726 715.9718307 1430710.756 0.010665177 0.013006828 5.63E-08 7.249142738 -0.069847229 ILQVSFK ddPTM_HeLa_CUDC101_4h_R1 1 ILQVSFK 7 0 Q15717;Q15717-2 Q15717 ELAVL1 ELAV-like protein 1 0 0 121.99 0.027268 505480 1354 832.8 476.33 885.58 741.17 683.91 441.32 493.88 218.57 443.01 FALSE FALSE TRUE 1195.286173 858.4575809 502.0818406 921.6977802 686.4953657 670.8655562 458.3418602 550.1013029 209.5604521 440.3749568 2.714246471 1.949378746 1.140123508 2.092984094 1.558888295 1.523396246 1.040799103 1.249165727 0.475868232 1 8.782588618 -5.095527525 1.688973555 1.801620785 1.133546648 0 0.620827563 0.645996403 3.4257469 0.099291486 0.410678655 8.03E-06 5.095527525 -0.668074137 S(ph)PRSPQLSDFGLER ddPTM_HeLa_CUDC101_4h_R1 1 SPRSPQLSDFGLER 14 1 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 0 S(0.5)PRS(0.5)PQLS(0.001)DFGLER 66.215 0.031375 5691300 475.28 775.88 640.49 628.12 895.18 820.19 710.36 812.45 876.49 637.67 TRUE FALSE FALSE 419.5683989 799.7839432 675.1168268 653.7374486 829.1443548 804.5462423 737.7588232 904.936024 840.3607112 633.8771105 0.661908108 1.261733434 1.065059482 1.031331527 1.308052209 1.269246403 1.163883048 1.427620605 1.325747053 1 9.308059362 -7.24898847 24.69387135 0.840345495 1.208398198 0.068997058 0.202820343 373.1817373 740131.1915 0.027173662 0.033151508 5.64E-08 7.24898847 0.368052703 TGS(ph)GSPFAGNSPAR ddPTM_HeLa_CUDC101_4h_R1 1 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 T(0.071)GS(0.636)GS(0.292)PFAGNS(0.001)PAR 142.19 0.00045873 13663000 1002.7 1065.3 1015 896.41 1160.5 1137.6 1064.5 775.79 950.92 1047.2 TRUE FALSE FALSE 885.165026 1098.12063 1069.87397 932.9694744 1074.892227 1115.902175 1105.558122 864.1027977 911.7226751 1040.971208 0.850326137 1.054900099 1.027765189 0.896249068 1.032585934 1.071981787 1.062044861 0.830092889 0.875838513 1 10.02371445 -7.248798699 24.8843913 0.929320674 1.000672548 0.179450369 0.082245004 1158.893505 2281394.009 0.014732956 0.017977425 5.64E-08 7.248798699 0.071351874 SLMS(ph)S(ph)PEDLTKDFEELKAEEVDVTK ddPTM_HeLa_CUDC101_4h_R1 1 SLMSSPEDLTKDFEELKAEEVDVTK 25 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 S(0.232)LMS(0.821)S(0.681)PEDLT(0.266)KDFEELKAEEVDVTK 49.106 0.017622 4305700 846.18 999.08 919.11 979.95 888.96 1130.5 839.99 967.42 1060.1 936.41 TRUE FALSE FALSE 746.9920631 1029.860471 968.7998668 1019.916597 823.3831919 1108.937596 872.3886957 1077.547182 1016.402229 930.8401917 0.802492275 1.106377314 1.040780013 1.095694627 0.884559132 1.191329732 0.937205659 1.157607065 1.091919148 1 9.862389694 -7.248743889 24.98924568 0.906732462 1.053470378 0.059983586 0.114236682 706.2103979 1390074.733 0.01745304 0.021299771 5.64E-08 7.248743889 0.146737916 ILSDDVPIRDYR ddPTM_HeLa_CUDC101_4h_R1 1 ILSDDVPIRDYR 12 1 P54725-2;P54725-3;P54725;A0A494C0B4;K7ENJ0;K7ELW1 P54725-2 RAD23A UV excision repair protein RAD23 homolog A 0 0 86.189 0.032935 10372000 5192.8 5119.3 4364.5 5027.4 5396.7 5143.8 4958.4 5765.2 5424.8 4486.9 FALSE FALSE TRUE 4584.107856 5277.019565 4600.458072 5232.439102 4998.596193 5045.690585 5149.647149 6421.487064 5201.187448 4460.211719 1.027778084 1.183132079 1.031443878 1.173136934 1.120708277 1.131267057 1.154574597 1.439726961 1.166130169 1 12.12289648 -1 0.317224783 1.011855534 4.338618034 0.510140284 0.082231132 18.98430734 0.242238062 0.022145868 37.04074849 0.1 1 3.3267625 MS(ph)PSKSPFLPSMK ddPTM_HeLa_CUDC101_4h_R1 1 MSPSKSPFLPSMK 13 1 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GV63;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;H0Y7H8;Q8NFD5-4 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 1 0 MS(0.985)PS(0.012)KS(0.003)PFLPS(0.001)MK 66.826 0.033715 51610000 1649.8 2055.3 1776.3 1941.3 2044.2 1874.9 1754.5 2105.7 2174.5 1930.8 TRUE FALSE FALSE 1456.412945 2118.621357 1872.332151 2020.474605 1893.403439 1839.139406 1822.171653 2345.404376 2084.86619 1919.315516 0.758818929 1.103842146 0.975520771 1.052705815 0.986499313 0.958226717 0.949386194 1.222000425 1.086255059 1 10.90637618 -7.24866234 24.98610962 0.886108936 1.025649342 0.027378285 0.113595687 805.0180628 1574252.548 0.018832122 0.022986543 5.64E-08 7.24866234 0.139540406 EKEPGEQASVPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 EKEPGEQASVPLSPK 15 1 P42858 P42858 HTT Huntingtin 1 0 EKEPGEQASVPLS(1)PK;EKEPGEQASVPLS(1)PK;EKEPGEQAS(0.014)VPLS(0.986)PK;EKEPGEQASVPLS(1)PK ;;; 157.83 0.00041639 202040000 28275.6 18494.6 19783 19938.7 22055.4 20624.5 19569.2 18209.6 19185.8 21030.9 TRUE FALSE FALSE 24961.17703 19064.3967 20852.52882 20751.88637 20428.41708 20231.12203 20323.9906 20282.50726 18394.9532 20905.80727 1.193982931 0.911918706 0.9974515 0.992637409 0.977164709 0.967727377 0.972169615 0.970185317 0.879896814 1 14.35161613 -7.24860822 24.97382995 1.091603052 0.972112097 0 0.082720851 603.4940578 1174606.889 0.012183739 0.014870086 5.64E-08 7.24860822 -0.119490955 LAVLSS(ph)SLTHWK ddPTM_HeLa_CUDC101_4h_R1 1 LAVLSSSLTHWK 12 0 F5GX19;F5H3Y3;Q6IAA8 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 0 LAVLS(0.093)S(0.536)S(0.336)LT(0.035)HWK 80.312 0.0029767 0 3755.2 2550.6 1785.3 2152.7 2965.9 3016.8 2878.7 2594.3 2102.8 3035.7 TRUE FALSE FALSE 3315.021149 2629.180963 1881.818718 2240.496411 2747.111466 2959.259566 2989.732423 2889.624625 2016.121694 3017.643521 1.098546308 0.871269567 0.623605374 0.742465568 0.910349896 0.980652468 0.990750697 0.957576534 0.668111286 1 11.55920667 -7.248503643 22.46998036 1.046535751 0.864532048 0 0.1616288 176.6665416 306877.3429 0.020563727 0.025072072 5.64E-08 7.248503643 -0.182003703 ILSYK(ac)IGK ddPTM_HeLa_CUDC101_4h_R1 1 ILSYKIGK 8 1 P47755;P52907 P47755;P52907 CAPZA2;CAPZA1 F-actin-capping protein subunit alpha-2;F-actin-capping protein subunit alpha-1 0 1 ILSYK(1)IGK 103.56 0.010397 525960 656.54 391.19 232.26 324.12 439.13 236.26 504.95 374.69 143.05 151.23 FALSE TRUE FALSE 579.5813765 403.2421002 244.8166781 337.3390146 406.7362548 231.7537341 524.4260906 417.3431951 137.1534185 150.3304772 3.855381737 2.682370918 1.628523255 2.243982862 2.705614073 1.541628407 3.488488165 2.776171557 0.912346059 1 7.231993713 -4.74118438 24.98331704 2.322566335 3.132329811 0.143835941 0.878353348 501.2262866 618222.3771 0.150267893 0.56085237 1.81E-05 4.74118438 0.809763476 ILTEAEIDAHLVALAERD ddPTM_HeLa_CUDC101_4h_R1 4 ILTEAEIDAHLVALAERD 18 1 G3V5Z7;P60900-3;P60900-2;P60900;H0YJC4 G3V5Z7 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 0 0 ;;; ;;; 169.67 3.32E-07 16783100 5369.84 5529.2 4817.1 4312.78 5531 4939.83 4312.41 4619.07 4944.32 5898.4 FALSE FALSE TRUE 4740.395495 5699.548098 5077.526997 4488.67381 5122.989149 4845.610973 4478.741098 5144.886258 4740.513037 5863.316054 0.808483706 0.972069055 0.865982142 0.765552081 0.873735801 0.826428412 0.763858038 0.877470396 0.808503753 1 12.51750111 -13.52287849 0.267715155 2.157717683 0.823828267 0 0.084001755 27.08321664 0.363156636 16.6725981 0.029840537 3.00E-14 13.52287849 -1.333889416 ILTFDQLALDSPK ddPTM_HeLa_CUDC101_4h_R1 1 ILTFDQLALDSPK 13 0 H0YHA7;J3QQ67;Q07020-2;Q07020;G3V203;F8VUA6 H0YHA7 RPL18 60S ribosomal protein L18 0 0 156 3.79E-07 0 874.03 937.83 791.8 832.09 1086.6 918.8 830.22 883.42 732.59 814.35 FALSE FALSE TRUE 771.5775283 966.7234307 834.6071031 866.0262268 1006.443683 901.2754208 862.2418635 983.9849619 702.3923301 809.50621 0.953145904 1.19421373 1.03100766 1.069820362 1.243280991 1.113364431 1.065145459 1.215537262 0.867679978 1 9.660898338 -7.27145982 24.84690421 0.977874452 1.127681869 0.570175896 0.074539744 353.101559 875556.9434 0.010969728 0.012622907 5.35E-08 7.27145982 0.149807417 ILYLTPEQEK(ac)DK ddPTM_HeLa_CUDC101_4h_R1 2 ILYLTPEQEKDK 12 1 B7Z7P8;P62495-2;P62495 B7Z7P8 ETF1 Eukaryotic peptide chain release factor subunit 1 0 1 ; ILYLTPEQEK(1)DK;ILYLTPEQEK(1)DK 193.28 5.75E-09 831240 867.82 451.755 233.85 343.75 858.47 719.48 1060.76 621 734.28 595.74 FALSE TRUE FALSE 766.0954551 465.6730361 246.4926384 357.7696108 795.1423784 705.7571177 1101.673869 691.6921298 704.0126676 592.196512 1.293650739 0.786348833 0.416234533 0.604140017 1.342700206 1.191761693 1.860318064 1.168011151 1.188815965 1 9.209932183 -5.267567021 2.348816501 1.022277698 1.490185596 0.307337595 0.323944037 0.346238599 3.703577403 0.05216169 0.151464786 5.40E-06 5.267567021 0.467907898 CAAPRPPSS(ph)SPEQR ddPTM_HeLa_CUDC101_4h_R1 2 CAAPRPPSSSPEQR 14 1 H0YEN2;E9PQP7;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-2;Q5H9R7;Q5H9R7-5 H0YEN2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 CAAPRPPS(0.217)S(0.707)S(0.076)PEQR;CAAPRPPS(0.039)S(0.79)S(0.171)PEQR ; 90.706 0.0078854 82738000 1193.05 1232.22 1207.94 1202.09 1285.74 1041 1139.31 1374.46 1211.77 1200.62 TRUE FALSE FALSE 1053.202488 1270.183238 1273.24489 1251.116426 1190.893522 1021.144659 1183.253568 1530.922971 1161.820328 1193.478659 0.882464449 1.064269753 1.066835071 1.048293924 0.997833948 0.855603619 0.991432532 1.282740131 0.973473903 1 10.22095705 -7.248455405 24.75391363 0.9444971 1.033885617 0.136366319 0.103343975 1059.409182 2019762.1 0.017860587 0.021800868 5.64E-08 7.248455405 0.089388517 IMATPEQVGK(ac)MK ddPTM_HeLa_CUDC101_4h_R1 7 IMATPEQVGKMK 12 1 P12956;P12956-2;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 1 ;;;;;; IMATPEQVGK(1)MK;IMATPEQVGK(1)MK;IMATPEQVGK(1)MK;IMATPEQVGK(1)MK;IMATPEQVGK(1)MK;IMATPEQVGK(1)MK;IMATPEQVGK(1)MK 165.63 7.99E-06 42254800 11418.09 10399.31 10628.94 9792.73 10558.63 9663.031 10081.868 10500.67 10763.63 10265.22 FALSE TRUE FALSE 10079.6788 10719.70041 11203.57265 10192.11986 9779.740901 9478.724783 10470.72903 11696.02383 10319.94862 10204.16201 0.987800741 1.050522365 1.09794147 0.998819878 0.958407058 0.928907711 1.026123361 1.146201306 1.011346997 1 13.31687009 -4.293165585 3.999467567 0.99926158 1.155254836 0.4760159 0.04404234 0.139340433 4.450260735 0.006375411 0.058778514 5.09E-05 4.293165585 0.155993256 IMDPNIVGSEHYDVAR ddPTM_HeLa_CUDC101_4h_R1 4 IMDPNIVGSEHYDVAR 16 0 P06576;H0YH81 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 0 ;;; ;;; 164.63 0.00047742 62026200 18453.5 11612.8 10054.6 10176.3 18476.7 15079.2 13432.6 13188.1 13513.8 13532.3 FALSE FALSE TRUE 16290.4087 11970.5766 10598.18209 10591.3335 17113.71065 14791.58938 13950.69988 14689.38 12956.75544 13451.80928 1.211019898 0.889885989 0.787862946 0.787353826 1.272223706 1.099598506 1.037087249 1.092000317 0.963197974 1 13.71551261 -7.259506325 24.99701197 1.099648284 0.995467844 0.013032638 0.153947582 360.8661016 4666501.675 0.028245171 0.033657151 5.50E-08 7.259506325 -0.10418044 IMEK(ac)CTLPLTGK ddPTM_HeLa_CUDC101_4h_R1 1 IMEKCTLPLTGK 12 1 P55809;E9PDW2;P55809-2 P55809 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" 0 1 IMEK(1)CTLPLTGK 119.69 0.0019421 372950 227.25 250.47 205.05 343.13 215.92 293.86 132.2 257.19 153.4 49.739 FALSE TRUE FALSE 200.6120995 258.1866838 216.1356232 357.1243245 199.9920118 288.2551101 137.2989983 286.46747 147.0767871 49.44315022 4.057429565 5.221889841 4.371396691 7.222928211 4.044888137 5.830031235 2.77690636 5.793875769 2.974664568 1 5.627698761 -8.597914799 0.614598421 0.961783358 5.047580812 0.444105955 1.270836468 0.359218017 0.270659076 0.717012766 0.272445076 2.52E-09 8.597914799 4.085797454 IMGIPEEEQMGLLR ddPTM_HeLa_CUDC101_4h_R1 1 IMGIPEEEQMGLLR 14 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 99.788 0.015877 5237200 815.04 677.49 581.79 608.49 883.52 812.07 541.09 747.09 612.69 530.28 FALSE FALSE TRUE 719.5022467 698.3626639 613.2433272 633.3068523 818.3444898 796.5811178 561.9600226 832.1357058 587.4346589 527.125871 1.364953394 1.324849912 1.163371712 1.201433827 1.552465047 1.511178186 1.066083176 1.578628088 1.114410601 1 9.04200369 -12.08192042 0.259926125 2.17E-07 1.381085825 0.332508978 0.162754412 16.76931084 0.43236211 8.765075785 0.091625474 8.28E-13 12.08192042 1.381085608 DYEIESQNPLAS(ph)PTNTLLGSAK ddPTM_HeLa_CUDC101_4h_R1 2 DYEIESQNPLASPTNTLLGSAK 22 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 DYEIESQNPLAS(0.989)PT(0.01)NT(0.001)LLGSAK;DYEIESQNPLAS(0.941)PT(0.055)NT(0.004)LLGSAK ; 125.98 2.69E-07 182636000 19832.3 19347.4 17696.6 17973.4 22347.9 19249.2 18486.9 17092.6 20729.9 19428.1 TRUE FALSE FALSE 17507.58786 19943.47046 18653.33173 18706.43294 20699.33994 18882.05358 19199.94593 19038.35249 19875.40475 19312.5408 0.906539851 1.032669428 0.965866269 0.968615841 1.071808218 0.977709447 0.994169857 0.985802577 1.029144997 1 14.23725036 -7.24834711 24.97330417 0.955866039 0.998772865 0 0.043427182 1024.270187 1953782.14 0.007390996 0.009026012 5.64E-08 7.24834711 0.042906826 IMGPNYTPGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 IMGPNYTPGKK 11 1 P13639 P13639 EEF2 Elongation factor 2 0 1 ; IMGPNYTPGK(1)K;IMGPNYTPGK(1)K 182.46 1.76E-05 2581800 2454.9 1294.99 1151.39 937.75 2505.5 2139.2 2491.2 1830.08 2176.34 1766.99 FALSE TRUE FALSE 2167.140343 1334.887107 1213.637626 975.9954983 2320.674257 2098.398324 2587.286418 2038.40891 2086.630344 1756.479865 1.23379743 0.759978599 0.690948784 0.555654248 1.321207435 1.194661189 1.472995205 1.160507986 1.187961437 1 10.77847132 AGT(ph)EDEEEEEEGRRETPEDR ddPTM_HeLa_CUDC101_4h_R1 1 AGTEDEEEEEEGRRETPEDR 20 2 O95456;O95456-2;F8WBH7 O95456 PSMG1 Proteasome assembly chaperone 1 1 0 AGT(0.999)EDEEEEEEGRRET(0.001)PEDR 65.915 0.012473 13681000 1216.5 1377.9 1315.1 1358.8 1426.6 1280 1269.2 1553.3 1386.5 1277.7 TRUE FALSE FALSE 1073.903714 1420.351466 1386.198284 1414.217737 1321.36256 1255.586133 1318.153469 1730.121393 1329.347883 1270.100184 0.845526777 1.118298764 1.091408616 1.113469438 1.040360892 0.988572515 1.037834248 1.362192854 1.046648052 1 10.31072658 -7.248342161 24.63406031 0.927054311 1.097232995 0.248754101 0.107603565 517.4425228 973238.2997 0.01774054 0.021653175 5.64E-08 7.248342161 0.170178684 IMNVIGEPIDER ddPTM_HeLa_CUDC101_4h_R1 3 IMNVIGEPIDER 12 0 P06576;H0YH81;F8W079 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 0 ;; ;; 149.33 0.0033343 44888000 5323.6 4198.5 3560.95 4343.5 4772.1 4462.35 4310.8 3662.18 3967.49 4289 FALSE FALSE TRUE 4699.575678 4327.850809 3753.465728 4520.646704 4420.07169 4377.238109 4477.069 4079.067768 3803.948383 4263.488837 1.102284035 1.015096081 0.880374236 1.060316299 1.03672646 1.026679857 1.050095162 0.956744095 0.892214927 1 12.05781876 -7.019871995 24.81661905 1.048847599 1.004254024 0 0.073607401 1228.912299 1534692.577 0.010117576 0.012483591 9.55E-08 7.019871995 -0.044593575 AS(ph)PSYSALDK ddPTM_HeLa_CUDC101_4h_R1 1 ASPSYSALDK 10 0 Q9NYD6;D6RAG4 Q9NYD6 HOXC10 Homeobox protein Hox-C10 1 0 AS(0.995)PS(0.005)YSALDK 155.47 0.00012163 24079000 2760.3 1991.8 2029.3 2166.6 1571.7 2097.6 2256 1984.1 2119.5 2250.4 TRUE FALSE FALSE 2436.741818 2053.164997 2139.010096 2254.963313 1455.758822 2057.591775 2343.014676 2209.961924 2032.133313 2237.014521 1.089282969 0.917814783 0.956189634 1.008023547 0.650759666 0.919793661 1.047384652 0.98790683 0.908413108 1 11.12735891 -7.248309066 23.55175927 1.042161401 0.924837277 0.042098855 0.111345625 426.1596431 764399.5713 0.017888892 0.02182645 5.65E-08 7.248309066 -0.117324124 RS(ph)PLTY(ph)GVGVLNR ddPTM_HeLa_CUDC101_4h_R1 1 RSPLTYGVGVLNR 13 1 A0A6I8PL32;A0A6I8PIT5;Q5JX83;A0A6I8PIW1;A0A6I8PLB1;A0A1B0GTF3;O43301;Q96MM6 A0A6I8PL32 HSPA12B;HSPA12A Heat shock 70 kDa protein 12A;Heat shock 70 kDa protein 12B 2 0 RS(0.852)PLT(0.47)Y(0.679)GVGVLNR 77.068 0.031426 6867300 0 349.12 255.56 154.91 248.85 197.01 264.56 267.4 250.37 280.64 TRUE FALSE FALSE 0 359.8759734 269.3763466 161.2278994 230.4928313 193.2523625 274.7641678 297.8397351 240.0496426 278.9707408 0 1.290013327 0.965607884 0.577938385 0.826225828 0.692733446 0.984921096 1.067637897 0.860483225 1 8.123970006 -7.248298373 24.99037473 0.527777762 0.894717674 0.138626214 0.309418225 1116.413175 2123094.608 0.067943749 0.082951594 5.65E-08 7.248298373 0.366939912 SQLDDHPES(ph)DDEENFIDANDDEDMEKFTDADK ddPTM_HeLa_CUDC101_4h_R1 1 SQLDDHPESDDEENFIDANDDEDMEKFTDADK 32 1 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 0 S(0.011)QLDDHPES(0.989)DDEENFIDANDDEDMEKFTDADK 81.507 5.52E-08 4291400 2863.1 1728.5 1852.9 1721.2 2023.6 2187.8 2040.8 1749.3 2061.4 2013.2 TRUE FALSE FALSE 2527.491758 1781.753036 1953.073379 1791.397976 1874.32306 2146.07136 2119.51434 1948.433241 1976.428219 2001.225397 1.262972058 0.890331014 0.975938733 0.895150531 0.936587684 1.072378635 1.059108256 0.973620085 0.987609003 1 10.96666795 -7.248220308 24.99345627 1.124181253 0.974942643 0.199449946 0.092148385 757.1068431 1431472.587 0.018699849 0.0228278 5.65E-08 7.248220308 -0.14923861 SQQTSFQSSPCNKS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SQQTSFQSSPCNKSPK 16 1 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 SQQTSFQS(0.002)SPCNKS(0.997)PK;SQQTSFQS(0.004)S(0.011)PCNKS(0.985)PK ; 119.5 0.00031417 67682000 5614 5781.4 5882.1 5622.6 6014.2 5211.2 5082.4 6219.6 5723.4 5639.3 TRUE FALSE FALSE 4955.93543 5959.518081 6200.104118 5851.913931 5570.544448 5111.805042 5278.42987 6927.614124 5487.47903 5605.757193 0.884079574 1.063106709 1.106024379 1.043911416 0.993718468 0.911884847 0.941608723 1.235803458 0.978900591 1 12.45269354 -7.248176798 24.81768258 0.945259798 1.034050841 0.162901113 0.089327362 975.469761 1825354.182 0.015585707 0.019024269 5.65E-08 7.248176798 0.088791043 GDLAFGAPGPRPPS(ph)PFDDPADDPEHK ddPTM_HeLa_CUDC101_4h_R1 2 GDLAFGAPGPRPPSPFDDPADDPEHK 26 1 Q7Z3Z5;Q93074-3;Q93074;Q93074-2 Q7Z3Z5 TNRC11;MED12 Mediator of RNA polymerase II transcription subunit 12 1 0 GDLAFGAPGPRPPS(1)PFDDPADDPEHK;GDLAFGAPGPRPPS(1)PFDDPADDPEHK ; 66.52 0.00060896 184645000 4611.4 3150.7 2824.1 3006.3 3598.7 3771 3262.7 2377.91 3209.4 3718.8 TRUE FALSE FALSE 4070.858682 3247.769333 2976.779388 3128.909908 3333.231071 3699.074458 3388.543432 2648.601663 3077.107174 3696.680412 1.101220075 0.87856373 0.805257435 0.846410714 0.901682239 1.00064762 0.91664495 0.716481104 0.832397403 1 11.85201461 -7.247898393 22.84463306 1.047798365 0.871834826 0.100213368 0.10014324 145.4766375 245429.3298 0.013190565 0.016092851 5.65E-08 7.247898393 -0.175963539 FNDPS(ph)GCAPSPGAYDVK ddPTM_HeLa_CUDC101_4h_R1 1 FNDPSGCAPSPGAYDVK 17 0 O75330-2;O75330;O75330-3 O75330-2 HMMR Hyaluronan mediated motility receptor 1 0 FNDPS(0.828)GCAPS(0.172)PGAYDVK 146.3 0.00015482 16880000 2090.3 1868.8 2122.4 1886.8 2208.4 2138.3 1690 554.9 2301.9 2013 TRUE FALSE FALSE 1845.278203 1926.375513 2237.143364 1963.751859 2045.490732 2097.51549 1755.183866 618.067573 2207.014708 2001.026586 0.92216576 0.962693612 1.117997821 0.981372198 1.022220667 1.048219701 0.877141702 0.308875243 1.102941222 1 10.96652462 -4.27010141 3.27557228 0.98342097 0.221817245 0.91123016 0.065601631 0.061223075 1.058331708 0.008402997 0.116278068 5.37E-05 4.27010141 -0.761603725 down KASQLVGIEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 KASQLVGIEKK 11 2 Q9NPD8 Q9NPD8 UBE2T Ubiquitin-conjugating enzyme E2 T 0 1 KASQLVGIEK(1)K 82.069 0.018296 0 2402.6 2732.6 2838.2 2538 2640.6 2345.5 2954.6 4565.2 2740.4 2441 FALSE TRUE FALSE 2120.97087 2816.788167 2991.641677 2641.51061 2445.808199 2300.763495 3068.559912 5084.883915 2627.439552 2426.480823 0.874093399 1.160853257 1.232913794 1.088617963 1.007965188 0.948189441 1.264613296 2.095579683 1.082819005 1 11.24464974 -4.27008931 2.381242527 0.991650217 2.344935992 0.885415344 0.111012708 0.138370752 0.947577647 0.018228725 0.381390037 5.37E-05 4.27008931 1.353285776 up IMSCK(ac)MR ddPTM_HeLa_CUDC101_4h_R1 1 IMSCKMR 7 1 Q6ZNE5 Q6ZNE5 ATG14 Beclin 1-associated autophagy-related key regulator 0 1 IMSCK(1)MR 46.37 0.036277 0 341.78 610.95 759.17 1039.6 617.82 672.01 526.68 394.73 452.94 264.17 FALSE TRUE FALSE 301.7170665 629.7726453 800.2130266 1081.999382 572.2446495 659.1925289 546.994224 439.6644676 434.2696215 262.5987051 1.148966315 2.398232105 3.047284739 4.120353073 2.179160211 2.510265725 2.08300427 1.674282695 1.653738625 1 8.036715992 -7.235539318 3.864225816 1.062873574 2.63053349 0.454399921 0.646954433 0.124861743 4.125980718 0.111207866 0.133425989 5.81E-08 7.235539318 1.567659917 MATFPGPGS(ph)SPAR ddPTM_HeLa_CUDC101_4h_R1 2 MATFPGPGSSPAR 13 0 O43187 O43187 IRAK2 Interleukin-1 receptor-associated kinase-like 2 1 0 MAT(0.001)FPGPGS(0.5)S(0.5)PAR;MAT(0.001)FPGPGS(0.499)S(0.499)PAR ; 132.86 0.0010009 20530400 4928.6 4751.4 4724 5036.6 6369.7 5038.7 4087 3419.8 3999.7 4639.3 TRUE FALSE FALSE 4350.876979 4897.785002 4979.393729 5242.014318 5899.819921 4942.595193 4244.636959 3809.096209 3834.830673 4611.705237 0.943442123 1.062033402 1.0797294 1.136675925 1.279314184 1.071750023 0.920405087 0.825962635 0.831542884 1 12.17108459 -7.247898336 22.50331759 0.973292115 1.062134118 0.153324486 0.122754634 374.2644036 621973.1096 0.020507627 0.025017784 5.65E-08 7.247898336 0.088842003 SPPLLES(ph)PDATR ddPTM_HeLa_CUDC101_4h_R1 1 SPPLLESPDATR 12 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 0 SPPLLES(0.999)PDAT(0.001)R 135.04 0.0014047 14505000 879.76 580.17 538.24 628.66 636.58 518.09 663.81 493.21 745.72 693.24 TRUE FALSE FALSE 776.6358664 598.04435 567.3388825 654.2994721 589.6207616 508.2082964 689.4133741 549.3550328 714.981106 689.1165776 1.127002153 0.86784206 0.823284334 0.949475739 0.85561831 0.737477972 1.000430691 0.797187371 1.037532878 1 9.428604254 -7.247721862 24.01708602 1.059973237 0.863855231 0.579885046 0.075314355 242.3156043 424254.2169 0.013062321 0.01594782 5.65E-08 7.247721862 -0.196118006 DGLPRTPS(ph)RR ddPTM_HeLa_CUDC101_4h_R1 1 DGLPRTPSRR 10 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 DGLPRT(0.077)PS(0.923)RR 54.066 0.040058 27225000 1479.5 1571.4 1535.4 1614.6 1853.5 1669.9 1697.6 1141.9 1477.3 1460.3 TRUE FALSE FALSE 1306.075253 1619.812971 1618.408368 1680.450367 1716.770998 1638.04944 1763.077001 1271.88928 1416.405069 1451.614071 0.899740006 1.115870261 1.114902646 1.157642655 1.182663514 1.128433151 1.214563179 0.876189688 0.975744929 1 10.50344223 -7.247457244 22.57428593 0.952655007 1.12188467 0.38282958 0.089235941 145.0036871 234109.3127 0.014420129 0.017597722 5.66E-08 7.247457244 0.169229663 YEMACAIADAFNLPSSHLRPIT(ph)DSPVLGAQRPR ddPTM_HeLa_CUDC101_4h_R1 1 YEMACAIADAFNLPSSHLRPITDSPVLGAQRPR 33 2 Q9NZL9-2;Q9NZL9 Q9NZL9-2 MAT2B Methionine adenosyltransferase 2 subunit beta 1 0 YEMACAIADAFNLPS(0.091)S(0.091)HLRPIT(0.461)DS(0.358)PVLGAQRPR 54.865 0.0032992 6626500 965.58 318.56 266.06 365.41 861.02 593.73 522.82 415.35 497.94 444.8 TRUE FALSE FALSE 852.3961761 328.374456 280.4440084 380.3129992 797.50427 582.4055895 542.9853425 462.6317651 477.4147024 442.1543098 1.927825099 0.742669355 0.634267273 0.860136361 1.803678608 1.317199848 1.228044894 1.046312916 1.079746803 1 8.788406141 -7.247430753 24.91619169 1.43813965 1.105394446 0.057844758 0.39049734 1398.814561 2487977.706 0.078888019 0.096363484 5.66E-08 7.247430753 -0.332745204 INAEK(ac)SSK ddPTM_HeLa_CUDC101_4h_R1 2 INAEKSSK 8 1 Q9C005 Q9C005 DPY30 Protein dpy-30 homolog 0 1 ; INAEK(1)SSK;INAEK(1)SSK 130.66 0.0028673 10909800 4004.8 2115.89 3972.1 4443.4 2936.9 2763 3066.7 1181.09 3558.1 3815.6 FALSE TRUE FALSE 3535.363415 2181.078063 4186.843741 4624.621058 2720.250738 2710.300378 3184.983646 1315.540511 3411.433612 3792.904642 0.932099209 0.575041629 1.103862115 1.219282185 0.717194603 0.714571189 0.839721519 0.346842496 0.899425094 1 11.88908739 -4.080869073 0.844975385 0.953779989 1.47E-14 0.436358161 0.183136825 2.088661081 0.890797325 0.028654769 1.985283617 8.30E-05 4.080869073 -0.953779989 INEELESQYQQSMDSK ddPTM_HeLa_CUDC101_4h_R1 2 INEELESQYQQSMDSK 16 0 E9PM92;O00193;E9PRZ9 E9PM92 C11orf58;SMAP Small acidic protein 0 0 ; ; 102.73 0.002332 8910200 1643.01 1405.98 1547.66 1522.87 1683.1 1479.88 1299.33 1363.26 1446.57 1903.02 FALSE FALSE TRUE 1450.418858 1449.296577 1631.331181 1584.979221 1558.941066 1451.653755 1349.445593 1518.448008 1386.941772 1891.700752 0.766727431 0.766134165 0.862362178 0.837859381 0.824094965 0.767380228 0.713350455 0.802689329 0.733171867 1 10.88546817 -9.296069729 0.773150746 1.016409429 0.79062025 0 0.091976625 0.305073505 0.289301286 0.044043591 0.008995958 5.06E-10 9.296069729 -0.22578918 INETDTFGPGDDDEIQFDDIGDDDEDIDDI ddPTM_HeLa_CUDC101_4h_R1 1 INETDTFGPGDDDEIQFDDIGDDDEDIDDI 30 0 X6RAC9;P47813;A6NJH9;O14602 X6RAC9 EIF1AX;EIF1AY "Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal" 0 0 128.19 2.74E-14 7044800 3686.6 3921.5 2751.5 2938.3 3671.6 3675.8 2921.5 2841.8 3718.6 4119 FALSE FALSE TRUE 3254.462337 4042.316767 2900.254413 3058.136574 3400.753383 3605.690239 3034.183234 3165.299025 3565.317734 4094.500005 0.794837546 0.987255284 0.708329322 0.746888893 0.830566218 0.880617959 0.741038767 0.773061185 0.87075778 1 11.99947157 -11.49887004 0.266600187 1.406419509 0.782832606 0.213720843 0.084980078 10.21017763 0.349964404 2.325735856 0.042774204 3.17E-12 11.49887004 -0.623586903 GQVSESEDS(ph)ITK ddPTM_HeLa_CUDC101_4h_R1 3 GQVSESEDSITK 12 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 GQVSES(0.001)EDS(0.989)IT(0.01)K;GQVSES(0.01)EDS(0.985)IT(0.004)K;GQVSESEDS(0.999)IT(0.001)K ;; 227.92 8.80E-33 66637000 8143.9 6227.8 5907.5 5645.1 6216 6746.8 6734.6 6493.5 5898.6 6847.6 TRUE FALSE FALSE 7189.284387 6419.671136 6226.877319 5875.331578 5757.458064 6618.116031 6994.355778 7232.693792 5655.457211 6806.870171 1.056180624 0.943116436 0.91479302 0.863147295 0.845830451 0.972270054 1.027543585 1.062557917 0.830845465 1 12.73277588 -7.247398904 23.19672483 1.026529738 0.942744629 0 0.088770885 335.4358706 554183.756 0.01183854 0.014453427 5.66E-08 7.247398904 -0.083785109 INFVGGNK(ac)LQSTGNK ddPTM_HeLa_CUDC101_4h_R1 2 INFVGGNKLQSTGNK 15 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 1 ; INFVGGNK(1)LQSTGNK;INFVGGNK(1)LQSTGNK 234.04 4.15E-35 20696800 3165.2 3333.2 3156.5 2875.2 3102.4 3214.6 2925.1 3186 2578.4 3322.1 FALSE TRUE FALSE 2794.180054 3435.891941 3327.149938 2992.463084 2873.542133 3153.286861 3037.922087 3548.681362 2472.117261 3302.340001 0.846121251 1.040441608 1.007512835 0.906164442 0.870153325 0.954864387 0.919930136 1.074596002 0.74859562 1 11.68927295 -4.257505067 24.10869575 0.935108654 1.07459609 0.219863282 0.083025173 260.920088 1598754.501 0.009775076 0.098512356 5.53E-05 4.257505067 0.139487435 INHEGEVNR ddPTM_HeLa_CUDC101_4h_R1 1 INHEGEVNR 9 0 E9PC52;Q16576;Q16576-2;Q5JP01;Q09028-3;Q09028;Q09028-4;Q09028-2 E9PC52;Q09028-3 RBBP7;RBBP4 Histone-binding protein RBBP7;Histone-binding protein RBBP4 0 0 153.97 0.00027725 8176300 2976.9 1181.4 3696.3 4053.6 2241 1979.9 2228 1044.3 3323.6 3717.1 FALSE FALSE TRUE 2627.952295 1217.797534 3896.133159 4218.923329 2075.685895 1942.136706 2313.934706 1163.178891 3186.599801 3694.990524 0.711220307 0.329580692 1.054436577 1.141795439 0.561756757 0.525613447 0.626235627 0.314798883 0.862410818 1 11.85135495 -4.182578624 0.527355955 0.855570015 4.58E-35 0.310852538 0.231287119 4.20858899 0.740537984 0.050171893 2.251881687 6.57E-05 4.182578624 -0.855570015 S(ph)SKASLGSLEGEAEAEASSPK ddPTM_HeLa_CUDC101_4h_R1 1 SSKASLGSLEGEAEAEASSPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.33)S(0.33)KAS(0.33)LGS(0.01)LEGEAEAEASSPK 78.088 0.0012635 13738000 1737 1879.4 1731 1626.9 2389.5 1930.5 1513.4 1954.1 1879.6 1793.8 TRUE FALSE FALSE 1533.391493 1937.302086 1824.583096 1693.252014 2213.231346 1893.678929 1571.772345 2176.546845 1802.122092 1783.130398 0.859943555 1.086461253 1.023247149 0.94959517 1.24120555 1.061996886 0.881467977 1.220632461 1.01065076 1 10.80019649 -7.247372112 24.31001957 0.933862233 1.059666622 0.161895206 0.109782188 615.0144037 1062822.981 0.018040002 0.022029312 5.66E-08 7.247372112 0.125804389 SLHPWYGIT(ph)PTS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 SLHPWYGITPTSSPK 15 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 2 0 SLHPWYGIT(0.934)PT(0.071)S(0.703)S(0.291)PK 149.32 0.00087449 11278000 2011 1240.5 1016.5 870.64 2181.6 1524.3 1112.9 944.48 1721.4 1519 TRUE FALSE FALSE 1775.273628 1278.718335 1071.455065 906.1484624 2020.667714 1495.226517 1155.824926 1051.995785 1650.443163 1509.96492 1.175705213 0.846853008 0.709589375 0.600112261 1.338221628 0.990239241 0.765464754 0.696702136 1.09303411 1 10.56029932 -7.247341648 23.89010901 1.082971905 0.855583613 0.237680023 0.196641182 520.1936973 881523.7136 0.034490231 0.042117747 5.66E-08 7.247341648 -0.227388292 ALSSLHGDDQDS(ph)EDEVLTIPEVK ddPTM_HeLa_CUDC101_4h_R1 4 ALSSLHGDDQDSEDEVLTIPEVK 23 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 1 0 ALSSLHGDDQDS(0.997)EDEVLT(0.003)IPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALS(0.061)S(0.056)LHGDDQDS(0.88)EDEVLT(0.003)IPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK ;;; 138.25 1.37E-07 50175400 24751.9 9795.4 6997.3 8931.8 17245 16463.8 12695.3 10456.3 13486.9 14036.8 TRUE FALSE FALSE 21850.5198 10097.18466 7375.595204 9296.077411 15972.87071 16149.78045 13184.96197 11646.60293 12930.96427 13953.30849 1.565974107 0.723640896 0.528591137 0.66622747 1.144737158 1.157415853 0.944934456 0.83468397 0.926731053 1 13.76831962 -7.246880887 24.84389283 1.267265557 0.863176876 0.211049105 0.249033618 686.7915748 1172002.339 0.048381616 0.059110932 5.66E-08 7.246880887 -0.404088681 RYEPYGMY(ph)SDDDANSDASSVCSER ddPTM_HeLa_CUDC101_4h_R1 1 RYEPYGMYSDDDANSDASSVCSER 24 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 RY(0.002)EPY(0.004)GMY(0.535)S(0.457)DDDANS(0.003)DASSVCSER 50.536 0.038255 4646500 622.57 746.05 666.62 656.49 962.33 890.82 644.41 531 776.98 690.41 TRUE FALSE FALSE 549.5932884 769.0349162 702.6594936 683.2644998 891.3408331 873.8290927 669.2651096 591.4468936 744.9525555 686.3034106 0.800802211 1.120546546 1.023832146 0.995572059 1.298756234 1.273240201 0.975173807 0.861786324 1.085456584 1 9.422702714 -7.246793841 24.35531314 0.905934376 1.085126792 0.082203515 0.14427606 610.0814536 1014556.706 0.024746559 0.030233564 5.67E-08 7.246793841 0.179192416 INIMNMNK ddPTM_HeLa_CUDC101_4h_R1 1 INIMNMNK 8 0 C9JQG9;Q8NDL9-3;Q8NDL9-2;Q8NDL9 C9JQG9 AGBL5 Cytosolic carboxypeptidase-like protein 5 0 0 65.252 0.0024502 0 2847.9 2989 3335.4 2803.2 2968 2998 2436.7 2401.3 3427.2 3492 FALSE FALSE TRUE 2514.073479 3081.087547 3515.721813 2917.526612 2749.056553 2940.818145 2530.684335 2674.654286 3285.929365 3471.229429 0.724260246 0.887607002 1.012817472 0.840487981 0.791954727 0.84719786 0.729045541 0.770520745 0.946618319 1 11.76123101 -9.546077008 1.29554933 1.000560406 0.817528067 0.338517762 0.081221195 0.39411492 1.179129242 0.063610306 0.014894105 2.84E-10 9.546077008 -0.183032339 INNFSADIK(ac)DSK ddPTM_HeLa_CUDC101_4h_R1 2 INNFSADIKDSK 12 1 P13797;P13797-3 P13797 PLS3 Plastin-3 0 1 ; INNFSADIK(1)DSK;INNFSADIK(1)DSK 180.24 3.41E-07 497890 521.17 288.461 193.41 126.22 323.48 414.08 441.04 293.97 355.95 0 FALSE TRUE FALSE 460.0792426 297.3481415 203.8663296 131.3677972 299.6175249 406.1821139 458.0510605 327.4343565 341.2775903 0 0 ALT(ph)TPTHYKLT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 ALTTPTHYKLTPR 13 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4;H0YCR0 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 2 0 ALT(0.977)T(0.025)PT(0.187)HYKLT(0.811)PR 120.21 0.012673 6660600 3003.8 2313 2430.5 2592.4 2480.5 2624.1 2060.9 651.77 2325.7 2149.5 TRUE FALSE FALSE 2651.699117 2384.260788 2561.900182 2698.129277 2297.518457 2574.049665 2140.389603 725.9648623 2229.833662 2136.714678 1.241016943 1.11585361 1.198990304 1.262746638 1.075257488 1.204676362 1.001719895 0.339757512 1.043580448 1 11.06117856 -4.269147984 3.125159453 1.134868163 0.226057385 0.894477148 0.082316463 0.09528267 1.424576221 0.014161611 0.209849983 5.38E-05 4.269147984 -0.908810778 down GADS(ph)GEEKEEGINR ddPTM_HeLa_CUDC101_4h_R1 3 GADSGEEKEEGINR 14 1 Q9BVG4 Q9BVG4 PBDC1 Protein PBDC1 1 0 GADS(1)GEEKEEGINR;GADS(1)GEEKEEGINR;GADS(1)GEEKEEGINR ;; 246.96 3.65E-55 117574500 9983.6 7882.7 8521.2 7673.52 7140.58 7975.7 7382.4 7044.6 8551.4 9787.7 TRUE FALSE FALSE 8813.337542 8125.556644 8981.881847 7986.479313 6613.833639 7823.576811 7667.141641 7846.528789 8198.907673 9729.482325 0.905838281 0.835147891 0.92316133 0.820853469 0.679772409 0.804110286 0.788031818 0.806469299 0.842686938 1 13.24814733 -7.246750738 0.441268339 0.99519753 0.763298991 0.340797406 0.066966873 0.358555302 0.177908913 0.024328396 0.028917699 5.67E-08 7.246750738 -0.231898539 ASPS(ph)PQPSSQPLQIHR ddPTM_HeLa_CUDC101_4h_R1 2 ASPSPQPSSQPLQIHR 16 0 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 AS(0.22)PS(0.78)PQPSSQPLQIHR;ASPS(0.991)PQPS(0.004)S(0.004)QPLQIHR ; 134.38 0.00042137 322682000 4085.4 4078.9 4446 4124 4742.4 4647.5 3405.98 3224.94 4009.5 3939.8 TRUE FALSE FALSE 3606.515605 4204.566074 4686.364208 4292.194545 4392.5626 4558.856681 3537.34979 3592.054134 3844.226713 3916.365894 0.920883212 1.073588676 1.196610413 1.095963621 1.121591475 1.164052799 0.903222499 0.917190638 0.981580071 1 11.93529984 -7.246672771 23.04756463 0.962639297 1.073003908 0.19952266 0.091136361 329.969413 515012.0985 0.016353087 0.019971022 5.67E-08 7.246672771 0.110364611 QEKPAEKPAETPVATS(ph)PTATDSTSGDSSR ddPTM_HeLa_CUDC101_4h_R1 6 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 2 P54727;P54727-2;H0Y579 P54727 RAD23B UV excision repair protein RAD23 homolog B 1 0 QEKPAEKPAETPVAT(0.081)S(0.906)PT(0.013)ATDSTSGDSSR;QEKPAEKPAETPVAT(0.242)S(0.739)PT(0.013)AT(0.005)DS(0.001)T(0.001)SGDSSR;QEKPAEKPAETPVAT(0.25)S(0.729)PT(0.014)AT(0.006)DSTSGDSSR;QEKPAEKPAETPVAT(0.177)S(0.646)PT(0.042)AT(0.06)DS(0.021)T(0.024)S(0.024)GDS(0.003)S(0.003)R;QEKPAEKPAETPVAT(0.205)S(0.571)PT(0.14)AT(0.074)DS(0.007)T(0.003)S(0.001)GDSSR;QEKPAEKPAETPVAT(0.033)S(0.948)PT(0.018)AT(0.001)DSTSGDSSR ;;;;; 132.56 8.59E-17 3041068000 22871.8 22269.6 21451.3 22631.7 24162.5 21773 20459.7 23623.1 22639.6 21952.7 TRUE FALSE FALSE 20190.80228 22955.69998 22611.02216 23554.71855 22380.08051 21357.7163 21248.83748 26312.25822 21706.38611 21822.12436 0.925244579 1.051946162 1.036151283 1.07939622 1.02556837 0.978718476 0.973729098 1.205760621 0.994696288 1 14.41350393 -7.246453336 24.43671002 0.964698829 1.044129779 0.226341979 0.063855371 619.6574398 1010432.858 0.010552225 0.012894254 5.67E-08 7.246453336 0.07943095 DDGVFVQEVTQNS(ph)PAAR ddPTM_HeLa_CUDC101_4h_R1 4 DDGVFVQEVTQNSPAAR 17 0 Q09666;E9PKR9;E9PLK4;E9PJZ0;E9PJC6;Q09666-2;E9PQE3 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 DDGVFVQEVTQNS(1)PAAR;DDGVFVQEVTQNS(1)PAAR;DDGVFVQEVTQNS(1)PAAR;DDGVFVQEVTQNS(1)PAAR ;;; 310.98 3.52E-144 445956000 19337.9 17351.3 16041.2 15724.7 19663.9 19226.1 15417.6 6390.19 17713.5 16768.7 TRUE FALSE FALSE 17071.14068 17885.87299 16908.43579 16366.02123 18213.33327 18859.39418 16012.262 7117.6234 16983.34203 16668.95903 1.02412758 1.073004796 1.01436663 0.981826232 1.092649712 1.131408035 0.960603597 0.426998674 1.018860386 1 14.02487639 -4.268958816 4.060385497 1.026950123 0.379096939 0.941916042 0.045403455 0.037879091 1.327559575 0.006608841 0.070892764 5.38E-05 4.268958816 -0.647853184 down GGPGAAPGGAS(ph)PASSSSAASSPSSGR ddPTM_HeLa_CUDC101_4h_R1 1 GGPGAAPGGASPASSSSAASSPSSGR 26 0 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 1 0 GGPGAAPGGAS(0.91)PAS(0.057)S(0.02)S(0.007)S(0.004)AAS(0.001)SPSSGR 64.257 0.0015627 6317500 940.15 1203 1186.7 1167.4 1039.3 1261.8 1396.4 1051.6 1147.8 1076.5 TRUE FALSE FALSE 829.9470422 1240.063004 1250.856592 1215.011618 962.6329096 1237.733267 1450.259616 1171.309893 1100.487198 1070.09693 0.775581182 1.15883241 1.168918961 1.13542202 0.899575433 1.156655283 1.355260047 1.094582986 1.028399547 1 10.06352577 -7.246423056 24.74128059 0.894024447 1.139368211 0.352672452 0.122881407 497.948026 820432.623 0.02223722 0.027174621 5.67E-08 7.246423056 0.245343764 RKELEEVS(ph)PETPVVPATTQR ddPTM_HeLa_CUDC101_4h_R1 2 RKELEEVSPETPVVPATTQR 20 2 Q15149 Q15149 PLEC Plectin 1 0 RKELEEVS(0.991)PET(0.009)PVVPATTQR;RKELEEVS(1)PETPVVPATTQR ; 95.366 0.0010229 178425000 5395.2 5323.31 5545.45 4670.76 5939 5805 4896.7 5566 5240.25 5155.5 TRUE FALSE FALSE 4762.782835 5487.314871 5845.253801 4861.253782 5500.891802 5694.279297 5085.567359 6199.610941 5024.244677 5124.834857 0.929353427 1.070730087 1.14057408 0.948567889 1.073379329 1.111114691 0.992337802 1.209719165 0.980372015 1 12.3232898 -7.246387925 22.65007802 0.966639121 1.073278597 0.330457685 0.070269997 191.0313797 287471.8732 0.011209317 0.013688761 5.67E-08 7.246387925 0.106639476 INSITVDNCK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 INSITVDNCKK 11 1 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 0 1 ; INSITVDNCK(1)K;INSITVDNCK(1)K 240.8 2.03E-28 3298800 4439.2 2603.1 2027.69 2053.8 4282.7 3359.1 4210.4 3321.1 3713.2 1550.19 FALSE TRUE FALSE 3918.843705 2683.298426 2137.313055 2137.562841 3966.773753 3295.030764 4372.796538 3699.1606 3560.140324 1540.969401 2.54310287 1.741305456 1.386992534 1.387154631 2.574206698 2.138284357 2.837691998 2.400541242 2.310325125 1 10.5896225 -9.453465673 1.069569966 0.969287976 2.145194086 0 0.616413025 0.442386637 0.866240295 0.408213463 0.091069118 3.52E-10 9.453465673 1.17590611 SLS(ph)TSGESLYHVLGLDK ddPTM_HeLa_CUDC101_4h_R1 1 SLSTSGESLYHVLGLDK 17 0 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 0 S(0.126)LS(0.857)T(0.015)S(0.002)GESLYHVLGLDK 153.06 5.95E-05 30663000 7937.6 2750.1 2109.4 2455.2 5441.2 4861.7 4302.8 2749.1 3639.5 4121.4 TRUE FALSE FALSE 7007.166561 2834.827321 2223.440545 2555.333668 5039.813516 4768.971173 4468.760437 3062.046432 3489.47827 4096.88573 1.71036417 0.691946886 0.542714806 0.623725883 1.230157209 1.164047886 1.090770095 0.747408308 0.851739223 1 12.00031194 -7.246378415 24.99014118 1.335449756 0.881681887 0.130071515 0.311033058 806.1209525 1337570.016 0.058574324 0.07158588 5.67E-08 7.246378415 -0.453767869 AQNGIAIMVYT(ph)NSSNTLY(ph)WELNQAVR ddPTM_HeLa_CUDC101_4h_R1 1 AQNGIAIMVYTNSSNTLYWELNQAVR 26 0 H7C1W0;Q96L15-2;Q96L15 H7C1W0 ART5 NAD(P)(+)--arginine ADP-ribosyltransferase;Ecto-ADP-ribosyltransferase 5 2 0 AQNGIAIMVY(0.457)T(0.518)NS(0.104)S(0.104)NT(0.104)LY(0.713)WELNQAVR 42.612 0.038766 35528000 1341.4 1576.8 1573.9 2028 1666.8 1320.9 1547 1428.7 1403.4 1416.8 TRUE FALSE FALSE 1184.163125 1625.379339 1658.989795 2110.710606 1543.843485 1295.706033 1606.668308 1591.337433 1345.551258 1408.372811 0.840802319 1.154083157 1.1779479 1.498687414 1.096189498 0.920002164 1.14079759 1.129912067 0.955394231 1 10.45981357 -7.246119189 23.01968311 0.924823323 1.161018656 0.361693158 0.13844451 234.6569608 352588.4655 0.025050875 0.030601498 5.67E-08 7.246119189 0.236195334 MAAKT(ph)PS(ph)SEESGLPK ddPTM_HeLa_CUDC101_4h_R1 1 MAAKTPSSEESGLPK 15 1 P28329-3;P28329-2;P28329 P28329-3 CHAT Choline O-acetyltransferase 2 0 MAAKT(0.41)PS(0.977)S(0.326)EES(0.287)GLPK 63.46 0.003014 0 4206.7 2706.4 2473.3 2996.5 2824.3 3227.9 2620.5 2175.5 2874.6 3227.1 TRUE FALSE FALSE 3713.597003 2789.780976 2607.014079 3118.710222 2615.957016 3166.333186 2721.573563 2423.150126 2756.107771 3207.905066 1.157639309 0.86965821 0.812684299 0.972195298 0.81547208 0.987040801 0.848395918 0.755368403 0.859161264 1 11.64741573 -7.246019805 24.23258695 1.074440783 0.869932037 0.206094213 0.101396665 288.4075425 453246.2088 0.014047678 0.017168677 5.68E-08 7.246019805 -0.204508746 DKS(ph)PSSLLEDAK ddPTM_HeLa_CUDC101_4h_R1 2 DKSPSSLLEDAK 12 1 P42684-2;P42684-6;P42684-3;P42684;P42684-4;P42684-7;P42684-10;P42684-5 P42684-2 ABL2 Abelson tyrosine-protein kinase 2 1 0 DKS(0.856)PS(0.106)S(0.038)LLEDAK;DKS(0.901)PS(0.086)S(0.014)LLEDAK ; 125.52 0.012182 126892000 8343.9 6725.9 6650.9 6368.7 7247.7 7450.6 6926.1 6052.8 6753.7 7170.4 TRUE FALSE FALSE 7365.840691 6933.117007 7010.467772 6628.443114 6713.05161 7308.492219 7193.241997 6741.826286 6475.309627 7127.750142 1.033403324 0.972693609 0.983545668 0.929948859 0.941819154 1.025357521 1.009188293 0.945856147 0.908464733 1 12.79923105 -7.245935233 23.44710192 1.015773791 0.973657196 0 0.044503841 343.1288604 518917.5357 0.005185264 0.006334567 5.68E-08 7.245935233 -0.042116595 INVELSTK(ac)GQK ddPTM_HeLa_CUDC101_4h_R1 2 INVELSTKGQK 11 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 0 1 ; INVELSTK(1)GQK;INVELSTK(1)GQK 155.48 0.00011864 9479500 3475 3519.3 3529.5 3321.3 3542.4 3776.8 3189.8 3848.7 2982 3321.44 FALSE TRUE FALSE 3067.665768 3627.725462 3720.315446 3456.75697 3281.084209 3704.763833 3312.831655 4286.820451 2859.080698 3301.683927 0.929121574 1.098750075 1.126793336 1.046967864 0.993760845 1.122083129 1.003376376 1.298373965 0.865946214 1 11.6889863 -7.252862338 24.53004817 0.966529632 1.090896094 0.414079649 0.087767476 397.0260974 1135481.341 0.0129987 0.01578491 5.59E-08 7.252862338 0.124366462 INVYYNEATGGK ddPTM_HeLa_CUDC101_4h_R1 1 INVYYNEATGGK 12 0 P68371 P68371 TUBB4B Tubulin beta-4B chain 0 0 161.93 0.00014762 1063400 636.96 538.42 428.6 459.48 483.85 438.57 369.97 558.94 252.23 451.88 FALSE FALSE TRUE 562.2965144 555.008082 451.7714124 478.2195804 448.1573495 430.205008 384.2398668 622.5674703 241.8329726 449.1921977 1.251794927 1.235569284 1.005741896 1.064621298 0.997696202 0.957730366 0.855401917 1.385971247 0.538373048 1 8.811189059 -6.723819007 24.98325568 1.130975516 1.030769896 0 0.2364302 328.1351828 217910.0914 0.024412841 0.03452455 1.89E-07 6.723819007 -0.100205621 INVYYNEATGGK(ac)YVPR ddPTM_HeLa_CUDC101_4h_R1 1 INVYYNEATGGKYVPR 16 1 P68371 P68371 TUBB4B Tubulin beta-4B chain 0 1 INVYYNEATGGK(1)YVPR 147.39 0.0032319 575570 0 0 73.198 0 0 0 0 0 138.08 124.56 FALSE TRUE FALSE 0 0 77.15530529 0 0 0 0 0 132.388284 123.8191116 0 0 0.623129211 0 0 0 0 0 1.069207187 1 6.952090203 -9.389367634 0.61739711 1.172428062 0.060919732 0.805991493 0.187216695 0.448189491 0.231579387 0.286642443 0.042394401 4.08E-10 9.389367634 -1.11150833 SSPGAVAGLSNAPGT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SSPGAVAGLSNAPGTPR 17 0 V9GYB2;U3KPY3;Q9BWG4-2;Q9BWG4 V9GYB2 SSBP4 Single-stranded DNA-binding protein 4 1 0 SSPGAVAGLSNAPGT(1)PR 246.42 3.60E-55 25005000 2576.2 1967.9 1913.6 1704.8 2021 1987.9 1864.8 2097.6 2307.1 2371.3 TRUE FALSE FALSE 2274.221741 2028.528666 2017.055004 1774.329113 1871.914856 1949.98412 1936.725961 2336.382305 2212.000361 2357.195402 0.964799838 0.860568735 0.85570123 0.752728905 0.794127994 0.827247549 0.821623001 0.991170398 0.938403477 1 11.20285564 -7.245825198 2.00830846 0.986700016 0.832560543 0.467015926 0.060240771 0.164522277 1.257163572 0.010560774 0.012595186 5.68E-08 7.245825198 -0.154139472 RGS(ph)LSNAGDPEIVK ddPTM_HeLa_CUDC101_4h_R1 3 RGSLSNAGDPEIVK 14 1 F5H7V1;O43847;O43847-2 F5H7V1 NRD1 Nardilysin 1 0 RGS(0.991)LS(0.009)NAGDPEIVK;RGS(0.978)LS(0.022)NAGDPEIVK;RGS(0.746)LS(0.254)NAGDPEIVK ;; 149.31 0.00040199 316513000 23078.9 15134.1 14991.5 15940.3 16991.2 18427 17071.1 16180.5 16543.9 16869.2 TRUE FALSE FALSE 20373.62633 15600.36368 15801.98584 16590.41433 15737.79303 18075.53568 17729.53805 18022.42272 15861.95344 16768.86125 1.214967792 0.930317417 0.942341021 0.989358436 0.938512925 1.077922669 1.057289328 1.074755313 0.94591715 1 14.0334971 -7.245742187 24.98320904 1.101512573 1.001419839 0 0.086248264 994.3624671 1582600.302 0.015889277 0.019429184 5.68E-08 7.245742187 -0.100092734 S(ph)TTELDDYSTNK ddPTM_HeLa_CUDC101_4h_R1 4 STTELDDYSTNK 12 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 S(0.851)T(0.142)T(0.007)ELDDYSTNK;S(0.883)T(0.115)T(0.001)ELDDYSTNK;S(0.992)T(0.006)T(0.002)ELDDYSTNK;S(0.986)T(0.011)T(0.003)ELDDYSTNK ;;; 214.42 9.45E-24 213795000 11996 8702.5 8710.1 8438.4 7822.9 8771.1 9632.8 10146.6 9463.8 9672.9 TRUE FALSE FALSE 10589.84706 8970.61371 9180.994353 8782.554426 7245.820252 8603.805881 10004.34032 11301.64793 9073.698158 9615.365161 1.101346323 0.932945713 0.954825345 0.913387508 0.753566831 0.894797622 1.040453499 1.175373763 0.943666518 1 13.23112593 -7.245738461 23.86732895 1.047857986 0.944349286 0.037444609 0.10893453 627.4075709 953736.1246 0.018682817 0.022831755 5.68E-08 7.245738461 -0.103508699 YHGHS(ph)MSDPGVSYR ddPTM_HeLa_CUDC101_4h_R1 5 YHGHSMSDPGVSYR 14 0 P08559-3;P08559;P08559-2;P08559-4;Q5JPU3;P29803 P08559-3 PDHA1;PDHA2 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial" 1 0 YHGHS(0.599)MS(0.401)DPGVSYR;YHGHS(0.994)MS(0.006)DPGVSYR;YHGHS(1)MSDPGVSYR;Y(0.029)HGHS(0.938)MS(0.033)DPGVSYR;YHGHS(0.936)MS(0.064)DPGVSYR ;;;; 158.14 3.88E-05 1450747000 16824.2 10429 9776.6 9665.1 13851.4 12146.5 10223.7 8210.4 12689.4 12552.4 TRUE FALSE FALSE 14852.09278 10750.30513 10305.15257 10059.28455 12829.60982 11914.82575 10618.03153 9145.038748 12166.33756 12477.73777 1.190287299 0.861558828 0.825883086 0.806178551 1.028199988 0.954886693 0.850958061 0.732908394 0.975043537 1 13.60706877 -7.245738026 24.46730032 1.08985789 0.871070261 0.445592222 0.094283765 378.3533483 589585.3009 0.01735269 0.021210929 5.68E-08 7.245738026 -0.218787629 AGFSPDSSKADS(ph)DAASSGGSDSK ddPTM_HeLa_CUDC101_4h_R1 1 AGFSPDSSKADSDAASSGGSDSK 23 1 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 0 AGFSPDS(0.004)S(0.004)KADS(0.871)DAAS(0.017)S(0.076)GGS(0.021)DS(0.008)K 63.291 0.0040978 8301800 684.58 1027 1006.6 1087.7 1188 1055 895.53 1124 917.55 841.13 TRUE FALSE FALSE 604.3345702 1058.640653 1061.019841 1132.061107 1100.363607 1034.877633 930.0708921 1251.951617 879.7282006 836.1269214 0.72277851 1.266124347 1.268969834 1.353934527 1.316024611 1.237703997 1.112356113 1.497322457 1.052146723 1 9.707578145 -7.245670198 23.28191736 0.869089862 1.286396099 0.639045088 0.12464308 133.8608904 197634.5744 0.021848204 0.02669786 5.68E-08 7.245670198 0.417306237 GS(ph)PNTASAEATLPR ddPTM_HeLa_CUDC101_4h_R1 2 GSPNTASAEATLPR 14 0 Q6PJG6-3;Q6PJG6 Q6PJG6-3 BRAT1 BRCA1-associated ATM activator 1 1 0 GS(1)PNTASAEATLPR;GS(1)PNTASAEATLPR ; 176.42 2.06E-07 152115000 1589.24 1166.05 1020.07 1042.36 1466.36 1443.66 1266.67 678.44 1381.13 1397.33 TRUE FALSE FALSE 1402.951696 1201.974618 1075.21807 1084.871946 1358.189544 1416.124591 1315.525886 755.6708673 1324.199237 1389.018619 1.010030879 0.865340897 0.774084706 0.781034848 0.977805139 1.019514477 0.947090174 0.544032209 0.953334404 1 10.43985022 -7.24533594 6.539318024 1.004839394 0.854528122 0.204847382 0.127298539 0.180445664 36.08533864 0.021004994 0.025236343 5.68E-08 7.24533594 -0.150311272 IPDPDSDDVSEVDAR ddPTM_HeLa_CUDC101_4h_R1 2 IPDPDSDDVSEVDAR 15 0 P51532-5;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;P51532;A0A2R8Y4C5;P51532-4;P51532-2;P51532-3;A0A2R8Y6V2;A0A2R8Y6N0;A0A2R8YG32;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y526;A0A2R8YDA1;A0A2R8Y7Y7;A0A2R8YF58;A0A2R8YGP5;A0A2R8Y583;A0A2R8Y7R0 P51532-5 SMARCA4 Transcription activator BRG1 0 0 ; ; 112.64 0.011353 12930300 1288.96 1060.77 1047.8 1116.36 1447.99 1014.17 1089.81 1120.61 1094.26 1377.82 FALSE FALSE TRUE 1137.870063 1093.451066 1104.447237 1161.889986 1341.174663 994.826397 1131.844337 1248.175713 1049.15414 1369.624665 0.830789698 0.798358188 0.80638679 0.848327294 0.979227884 0.72634965 0.826390153 0.911326836 0.766015804 1 10.41956487 -9.138800162 0.830766388 1.003214857 0.838898219 0 0.096086998 0.447855231 0.543394259 0.046196118 0.012466331 7.26E-10 9.138800162 -0.164316638 TKSPPASSAASADQHSQS(ph)GSSSDNTER ddPTM_HeLa_CUDC101_4h_R1 1 TKSPPASSAASADQHSQSGSSSDNTER 27 1 Q8IY57-5;Q8IY57-3;Q8IY57 Q8IY57-5 YAF2 YY1-associated factor 2 1 0 TKSPPASSAASADQHS(0.018)QS(0.471)GS(0.349)S(0.127)S(0.036)DNT(0.001)ER 72.728 8.18E-05 989510 198.22 148.96 160.23 188.42 363.2 376.94 228.12 209.15 246.36 56.363 TRUE FALSE FALSE 174.9849521 153.549281 168.8925185 196.104582 336.4074596 369.7504975 236.9186648 232.9587906 236.2049365 56.02775037 3.123183618 2.740593367 3.014444045 3.500133072 6.004300679 6.599417165 4.228594995 4.157917979 4.21585616 1 5.808069661 -7.245261373 0.319878361 0.86247615 5.602791634 0.246053836 1.32465523 0.624766331 0.199978339 0.937036466 1.088203638 5.69E-08 7.245261373 4.740315484 IENQVAMS(ph)FY(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 IENQVAMSFYK 11 0 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 2 0 IENQVAMS(1)FY(1)K 76.522 0.0022337 0 219.91 342.73 368.66 256.36 342.28 452.6 340.41 168.25 339.86 300.94 TRUE FALSE FALSE 194.1324832 353.2891051 388.5908747 266.8154689 317.0306863 443.9674091 353.5397277 187.4028999 325.850827 299.1499955 0.64894697 1.180976468 1.298983388 0.891911994 1.059771657 1.484096325 1.181814251 0.626451288 1.089255664 1 8.224725231 -7.245142658 24.6795334 0.834224955 1.118792076 0.085942813 0.244532664 773.966376 1172084.963 0.041040573 0.050180997 5.69E-08 7.245142658 0.284567122 LKPGGVGAPSSS(ph)SPSPSPSAR ddPTM_HeLa_CUDC101_4h_R1 1 LKPGGVGAPSSSSPSPSPSAR 21 1 Q92797 Q92797 SYMPK Symplekin 1 0 LKPGGVGAPS(0.002)S(0.012)S(0.912)S(0.012)PS(0.06)PS(0.001)PS(0.001)AR 158.47 1.69E-07 39550000 3112.3 1910.5 2154.7 1916.3 1953 2217.6 1841.2 1913.8 2093.3 2264 TRUE FALSE FALSE 2747.480912 1969.36024 2271.1896 1994.454997 1808.931081 2175.302975 1912.215701 2131.659256 2007.013288 2250.533627 1.22081309 0.875063681 1.009178255 0.886214262 0.803778739 0.966572082 0.84967213 0.947179473 0.891794401 1 11.13605141 -7.245049003 24.68250884 1.104272849 0.904938119 0.188175604 0.100290209 429.6426738 647005.8137 0.015912976 0.019458212 5.69E-08 7.245049003 -0.19933473 DGGRSS(ph)PGGQDEGGFMAQGK ddPTM_HeLa_CUDC101_4h_R1 1 DGGRSSPGGQDEGGFMAQGK 20 1 F5GZ78;A0A1B0GTU4;P49023;A0A1B0GV30 F5GZ78 PXN Paxillin 1 0 DGGRS(0.077)S(0.923)PGGQDEGGFMAQGK 91.733 0.00094116 54477000 1217.8 1714.6 1507.6 1530.7 2277.2 1597.1 1427.3 2218.3 1490.5 1468.7 TRUE FALSE FALSE 1075.05133 1767.424794 1589.105416 1593.128562 2109.215493 1566.637978 1482.351439 2470.822305 1429.060959 1459.964107 0.73635463 1.210594689 1.088455126 1.091210773 1.444703663 1.073066092 1.015334166 1.692385651 0.97883294 1 10.51171719 -7.244925836 23.60277708 0.875500803 1.21384698 0.343075193 0.204409701 304.6292594 435405.9159 0.033726309 0.041227957 5.69E-08 7.244925836 0.338346176 EEAT(ph)YGVWAERDSDDERPSFGGK ddPTM_HeLa_CUDC101_4h_R1 1 EEATYGVWAERDSDDERPSFGGK 23 2 Q9UBB9;F6XM96;F6UKU9;F6SQZ1 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 EEAT(0.535)Y(0.463)GVWAERDS(0.002)DDERPSFGGK 56.081 0.040125 16138000 522.5 597.7 552.24 578.3 708.58 728.56 491.14 608.02 673.28 547.21 TRUE FALSE FALSE 461.2533421 616.1144286 582.0957648 601.8855736 656.3094651 714.6639319 510.0834343 677.2345391 645.5271134 543.9551706 0.847962051 1.132656627 1.070117165 1.106498488 1.206550651 1.313828732 0.937730647 1.24501903 1.186728518 1 9.087343948 -7.244329229 22.53649246 0.928204311 1.141228123 0.086809267 0.130769407 145.8512295 192106.3436 0.017629162 0.021549406 5.70E-08 7.244329229 0.213023812 KAGLAS(ph)PEEEDAVGKEPLK ddPTM_HeLa_CUDC101_4h_R1 1 KAGLASPEEEDAVGKEPLK 19 2 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 0 KAGLAS(1)PEEEDAVGKEPLK 83.115 0.0011476 0 1557.6 1008.4 948.69 976.7 1279.6 1284.5 948.79 817.72 1282.1 1167.3 TRUE FALSE FALSE 1375.020489 1039.467609 999.979051 1016.534048 1185.206457 1260.000303 985.3851481 910.8059395 1229.251295 1160.356848 1.184997953 0.895817188 0.861785797 0.876052957 1.021415489 1.085873113 0.849208715 0.784936066 1.0593735 1 10.18035283 -7.244196401 24.51411262 1.087360145 0.916138608 0.418830146 0.091928771 523.4134079 744130.524 0.018116985 0.022159457 5.70E-08 7.244196401 -0.171221538 S(ph)RADLTAEMISAPLGDFR ddPTM_HeLa_CUDC101_4h_R1 3 SRADLTAEMISAPLGDFR 18 1 Q9H3Q1;J3KRZ9;Q9H3Q1-2;J3QQS6;J3QR93 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 S(0.997)RADLT(0.003)AEMISAPLGDFR;S(0.994)RADLT(0.006)AEMISAPLGDFR;S(0.997)RADLT(0.003)AEMISAPLGDFR ;; 108.14 0.00032751 19043400 3507.8 4104.5 3627 3772.4 4991.5 5041.2 4270.1 2956.22 3695.01 3792 TRUE FALSE FALSE 3096.621001 4230.95478 3823.086591 3926.254778 4623.286989 4945.047509 4434.799187 3292.744135 3542.700124 3769.445015 0.821505816 1.122434407 1.01423063 1.041600225 1.226516628 1.311876812 1.176512502 0.873535526 0.939846611 1 11.88013641 -7.244069181 23.86672823 0.915711082 1.118109907 0.338233093 0.120727067 385.7768298 530059.0122 0.022095653 0.027021298 5.70E-08 7.244069181 0.202398825 (ac)SETAPAAPAAPAPAEKT(ph)PVKKK ddPTM_HeLa_CUDC101_4h_R1 1 SETAPAAPAAPAPAEKTPVKKK 22 3 P10412 P10412 HIST1H1E Histone H1.4 1 0 SETAPAAPAAPAPAEKT(1)PVKKK 42.068 0.0009753 50664000 2335 2688.6 3825.9 3813.2 4288.2 2415.8 1847.4 2565.2 2589.2 1657.9 TRUE FALSE FALSE 2061.29484 2771.432579 4032.739727 3968.718778 3971.868029 2369.72264 1918.654837 2857.211999 2482.47208 1648.038737 1.250756304 1.681654998 2.446993287 2.408146537 2.410057446 1.437904696 1.164204939 1.733704393 1.506319011 1 10.68653444 -7.244017498 2.835309648 1.107462944 1.926223836 0.326646275 0.422425609 0.201243371 3.167840327 0.079825668 0.095214869 5.70E-08 7.244017498 0.818760892 RPDPDS(ph)DEDEDYERER ddPTM_HeLa_CUDC101_4h_R1 4 RPDPDSDEDEDYERER 16 2 H0Y6J6;Q5W012;Q96I25;Q5W011;Q5W010 H0Y6J6 RBM17 Splicing factor 45 1 0 RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER ;;; 170.22 6.17E-07 499359000 9230.6 9302 9807.3 8810.8 10857.2 8863.5 8733.1 9106.3 9530 9074.4 TRUE FALSE FALSE 8148.603061 9588.583594 10337.5123 9170.142508 10056.28599 8694.443505 9069.938592 10142.92438 9137.169366 9020.425065 0.90335023 1.062985782 1.14601166 1.016597604 1.114835045 0.96386184 1.005489046 1.124439736 1.012942217 1 13.1389797 -7.243837288 24.07245668 0.954359832 1.059594523 0.303062007 0.06065775 387.6608781 530161.4121 0.010390345 0.012708 5.70E-08 7.243837288 0.105234692 TAS(ph)PPPPPK ddPTM_HeLa_CUDC101_4h_R1 3 TASPPPPPK 9 0 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 T(0.085)AS(0.915)PPPPPK;T(0.002)AS(0.998)PPPPPK;T(0.003)AS(0.997)PPPPPK ;; 112.71 0.0088793 2526300000 25009.4 23341.1 24031.9 23035 23439.3 21715.7 22020.9 25059.6 23437.6 23637.1 TRUE FALSE FALSE 22077.83604 24060.21162 25331.13721 23974.46687 21710.22954 21301.5092 22870.25349 27912.28357 22471.49221 23496.50548 0.93962211 1.023991063 1.078081046 1.020341807 0.923976953 0.906582012 0.973347016 1.187933397 0.956375927 1 14.52015859 -7.243757037 24.17168018 0.971488216 1.009426488 0.079374684 0.07625387 1437.615229 1965213.397 0.013087129 0.016007387 5.70E-08 7.243757037 0.037938272 IWDPTPSHTPAGAAT(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 3 IWDPTPSHTPAGAATPGR 18 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 IWDPTPS(0.001)HT(0.055)PAGAAT(0.945)PGR;IWDPTPSHT(0.006)PAGAAT(0.994)PGR;IWDPTPS(0.009)HT(0.356)PAGAAT(0.635)PGR ;; 89.47 0.0076875 41216700 10613.6 7852.9 7895.9 7684.9 8345.9 9165.8 8098.6 6637.3 8132.6 8594.7 TRUE FALSE FALSE 9369.489897 8094.838541 8322.776238 7998.323439 7730.239584 8990.977636 8410.965715 7392.863403 7797.370786 8543.578342 1.096670449 0.947476364 0.974155782 0.936179563 0.904801159 1.052366734 0.984478093 0.865312297 0.912658663 1 13.06062473 -7.243179093 24.64263061 1.045649934 0.955626583 0 0.066402255 558.4287528 753611.7589 0.009505248 0.011629547 5.71E-08 7.243179093 -0.090023351 HQEVQDQDPVFQGS(ph)DSSGYQSDHKK ddPTM_HeLa_CUDC101_4h_R1 1 HQEVQDQDPVFQGSDSSGYQSDHKK 25 1 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 0 HQEVQDQDPVFQGS(0.442)DS(0.123)S(0.123)GY(0.108)QS(0.205)DHKK 63.376 0.0052734 27172000 1639.1 1713.6 1743 1467.1 2094.3 1827.4 1716.7 1602.5 1851.1 1633.3 TRUE FALSE FALSE 1446.967183 1766.393985 1837.231852 1526.934679 1939.807661 1792.54539 1782.913694 1784.922122 1774.796875 1623.585059 0.891217356 1.087959005 1.131589529 0.940471009 1.194768116 1.104066202 1.098133839 1.099370872 1.09313452 1 10.66496725 -7.243105479 22.11493361 0.948630427 1.0937733 0.185843392 0.078827812 111.316538 134273.1493 0.01131395 0.013834368 5.71E-08 7.243105479 0.145142873 S(ph)PVPTTLPGLR ddPTM_HeLa_CUDC101_4h_R1 2 SPVPTTLPGLR 11 0 F8VV64;Q63HR2-2;Q63HR2-6;Q63HR2;Q63HR2-4;Q63HR2-5 F8VV64 TNS2 Tensin-2 1 0 S(0.998)PVPT(0.001)T(0.001)LPGLR;S(0.999)PVPTTLPGLR ; 89.805 0.02519 23526000 1308.41 1415.37 1595.9 1212.78 1671.7 1321.55 1203.78 1278.98 1602.86 1379.04 TRUE FALSE FALSE 1155.040163 1458.975872 1682.179181 1262.24241 1548.382021 1296.343636 1250.210198 1424.573913 1536.789432 1370.837409 0.842579985 1.064295344 1.227117943 0.920782 1.129515442 0.945658199 0.912004728 1.039199765 1.121058867 1 10.42084175 -7.243100532 24.83980724 0.925662768 1.032723024 0 0.115537577 961.9532785 1302958.421 0.01764787 0.021591819 5.71E-08 7.243100532 0.107060257 IPSAVGYQPTLATDMGTMQER ddPTM_HeLa_CUDC101_4h_R1 1 IPSAVGYQPTLATDMGTMQER 21 0 P06576;H0YH81;F8W0P7;F8W079;H0YI37 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 0 94.673 0.0020197 12606000 632.47 438.93 526.34 535.66 547.83 503.98 554.03 376.86 439.4 681.9 FALSE FALSE TRUE 558.3328254 452.452913 554.7955325 557.5065301 507.4176723 494.3674212 575.3991227 419.7602191 421.287746 677.8440285 0.823689229 0.667488233 0.818470783 0.822470224 0.748575854 0.729323267 0.848866551 0.619257825 0.621511333 1 9.404809538 -8.677525699 0.479914035 1.026098163 0.74779382 0 0.136415112 0.53568314 0.230472704 0.06811891 0.020610382 2.10E-09 8.677525699 -0.278304343 EGFES(ph)DTDSEFTFK ddPTM_HeLa_CUDC101_4h_R1 2 EGFESDTDSEFTFK 14 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;E9PMP7 E9PMS6 LMO7 LIM domain only protein 7 1 0 EGFES(0.961)DT(0.038)DSEFTFK;EGFES(0.44)DT(0.44)DS(0.12)EFTFK ; 255.39 3.42E-57 91471000 7379.8 4974.9 4857 4664.4 5137.9 5247.9 5313 5349.2 5267.4 5656.6 TRUE FALSE FALSE 6514.751031 5128.170772 5119.584112 4854.634393 4758.887353 5147.805051 5517.92419 5958.131306 5050.275543 5622.954292 1.158599322 0.912006484 0.910479411 0.863360102 0.846332214 0.915498292 0.981321189 1.059608703 0.898153405 1 12.4571126 -7.242917595 24.56789384 1.074894124 0.922415774 0.097934242 0.087017061 460.8883942 611337.6444 0.0137969 0.016881013 5.72E-08 7.242917595 -0.152478351 APS(ph)PTLGSPR ddPTM_HeLa_CUDC101_4h_R1 1 APSPTLGSPR 10 0 Q9ULI4;C9JFF0 Q9ULI4 KIF26A Kinesin-like protein KIF26A;Kinesin-like protein 1 0 APS(0.498)PT(0.498)LGS(0.004)PR 91.123 0.026802 28716000 1825.6 1786.5 1884.6 1813.8 1956.5 1653.7 1721.6 1676.7 1853.5 1774.1 TRUE FALSE FALSE 1611.605935 1841.539947 1986.487177 1887.774604 1812.172893 1622.158428 1788.002689 1867.568751 1777.097945 1763.547574 0.913843187 1.044224706 1.126415417 1.070441553 1.027572445 0.91982686 1.013867 1.058984049 1.007683587 1 10.78426478 -7.242596988 24.54561878 0.959314838 1.036235365 0.206450318 0.054838544 666.3735578 868072.5796 0.010235787 0.012523726 5.72E-08 7.242596988 0.076920527 AKPS(ph)PAPPSTTTAPDASGPQKR ddPTM_HeLa_CUDC101_4h_R1 1 AKPSPAPPSTTTAPDASGPQKR 22 2 Q5QNY5;P40855;E9PS71;B7Z8B3 Q5QNY5 PEX19 Peroxisomal biogenesis factor 19 1 0 AKPS(0.978)PAPPS(0.011)T(0.005)T(0.005)T(0.002)APDASGPQKR 76.98 0.0007466 7887800 2062.8 2086.2 2385.5 2295.2 2759.9 2038.5 2017.6 1221.7 1939.9 1845.9 TRUE FALSE FALSE 1821.001711 2150.473349 2514.467346 2388.808177 2556.307675 1999.619009 2095.419508 1360.77339 1859.936501 1834.920505 0.992414498 1.171970853 1.370341298 1.30185922 1.393143555 1.089757842 1.14196746 0.741598007 1.013633286 1 10.84150185 -7.242438917 6.035036729 0.996233532 1.190159052 0.164986508 0.173283549 0.204492307 29.03089268 0.029378853 0.035336918 5.72E-08 7.242438917 0.19392552 IPTPIVGVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 IPTPIVGVKR 10 1 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 0 1 IPTPIVGVK(1)R 85.862 0.032342 7210300 60.616 113.2 0 0 128.78 141.54 55.282 116.37 0 77.867 FALSE TRUE FALSE 53.51068437 116.6875578 0 0 119.280156 138.8403603 57.41424526 129.6170904 0 77.40384362 0.691318181 1.507516324 0 0 1.541010761 1.793714031 0.74174928 1.674556254 0 1 6.274333303 S(ph)VPEDDGHALLAER ddPTM_HeLa_CUDC101_4h_R1 2 SVPEDDGHALLAER 14 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 S(1)VPEDDGHALLAER;S(1)VPEDDGHALLAER ; 156.29 4.58E-05 11019800 1422.06 1689.79 1540.01 1357.61 1573.85 1786.03 1533.67 1250.9 1560.71 1682.75 TRUE FALSE FALSE 1255.368283 1741.850427 1623.267599 1412.979204 1457.750221 1751.964453 1592.824166 1393.2974 1496.376873 1672.740928 0.750485781 1.041315124 0.970423795 0.844708933 0.871473996 1.047361503 0.952224065 0.832942733 0.894565828 1 10.7079983 -7.242278481 24.97221713 0.882173828 0.937213168 0.075357068 0.089122087 2149.7372 2801734.444 0.018917205 0.023148527 5.72E-08 7.242278481 0.05503934 QNDTPKGPQPPTVS(ph)PIR ddPTM_HeLa_CUDC101_4h_R1 1 QNDTPKGPQPPTVSPIR 17 1 P46087;P46087-4;P46087-2 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 QNDTPKGPQPPT(0.131)VS(0.869)PIR 66.308 0.018644 4935500 1221.3 1653.8 1899.1 1605.9 2569.7 1624.3 1569.5 1125.9 1612.9 1080.3 TRUE FALSE FALSE 1078.141065 1704.751618 2001.77109 1671.395543 2380.138351 1593.319184 1630.036141 1254.067905 1546.415579 1073.874328 1.003973219 1.587477765 1.864064574 1.556416333 2.216403065 1.483711029 1.517902141 1.16779764 1.440034033 1 10.06860945 -7.241919363 5.063373326 1.000588379 1.650195503 0.329946141 0.291088494 0.096607434 7.349870997 0.042589293 0.051110957 5.73E-08 7.241919363 0.649607125 IPVHPNDHVNK ddPTM_HeLa_CUDC101_4h_R1 1 IPVHPNDHVNK 11 0 P07954-2;P07954 P07954-2 FH "Fumarate hydratase, mitochondrial" 0 0 74.962 0.037821 6502500 3768.5 3298.6 3278.2 3454.4 3554.1 2932.1 2804.1 3086.9 2949.6 3199.1 FALSE FALSE TRUE 3326.762143 3400.225956 3455.429408 3595.285363 3291.921124 2876.175078 2912.255076 3438.300218 2828.01624 3180.071611 1.046128059 1.069229367 1.086588552 1.130567422 1.035172011 0.904437204 0.91578286 1.081202136 0.889293257 1 11.63484354 -5.376352921 8.882013433 1.040173712 0.962151359 0.15359234 0.074326124 0.342204668 24.26266956 0.008713 0.019512143 4.20E-06 5.376352921 -0.078022353 ALIQTCLNS(ph)PDSPPR ddPTM_HeLa_CUDC101_4h_R1 1 ALIQTCLNSPDSPPR 15 0 P11831 P11831 SRF Serum response factor 1 0 ALIQT(0.06)CLNS(0.65)PDS(0.289)PPR 128.85 0.00071159 29845000 1738 1168.8 1167.9 1005.6 1323.4 1238.3 1564.7 995.47 1369.9 1306.4 TRUE FALSE FALSE 1534.274275 1204.809343 1231.040207 1046.612715 1225.775419 1214.681491 1625.051003 1108.790281 1313.432142 1298.629475 1.181456531 0.927754503 0.947953385 0.805936362 0.943899274 0.935356477 1.251358478 0.853815736 1.011398684 1 10.34277414 -7.241355008 24.73340269 1.08568781 0.957027943 0.147189321 0.119885829 902.9114998 1111914.37 0.021064079 0.0257801 5.74E-08 7.241355008 -0.128659867 SRS(ph)FTLDDESLK ddPTM_HeLa_CUDC101_4h_R1 2 SRSFTLDDESLK 12 1 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 S(0.002)RS(0.995)FT(0.003)LDDESLK;S(0.02)RS(0.952)FT(0.028)LDDESLK ; 128.45 0.0010885 102710000 10467.6 10525.9 8694.5 10168.2 11839.1 10352.5 10413 9621.2 8529.4 8697.3 TRUE FALSE FALSE 9240.603796 10850.1905 9164.550969 10582.90315 10965.75318 10155.04331 10814.6329 10716.43852 8177.814522 8645.568073 1.068825521 1.255000297 1.060028779 1.224084185 1.268366993 1.174595264 1.250887484 1.239529714 0.945896725 1 13.07774505 -7.241255744 0.530826211 1.002975766 1.242479933 0.710331718 0.060926753 0.292313513 0.191452131 0.020000842 0.024079721 5.74E-08 7.241255744 0.239504167 ESYS(ph)VYVYK ddPTM_HeLa_CUDC101_4h_R1 2 ESYSVYVYK 9 0 O60814;P57053;P58876;P62807;Q5QNW6;Q5QNW6-2;Q93079;U3KQK0;Q99877;Q99879;Q99880 O60814;P58876;P62807;Q5QNW6;Q93079;U3KQK0;Q99879;Q99880 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BF;HIST1H2BH;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-F;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 1 0 ESYS(1)VYVYK;ES(0.032)YS(0.968)VYVYK ; 140.78 0.0017597 27896000 3683.1 4303.5 4262 3878.8 4665.7 4811.5 4722.2 3871.8 3497.8 3989.8 TRUE FALSE FALSE 3251.372601 4436.085734 4492.416612 4036.99423 4321.520606 4719.728654 4904.336836 4312.550062 3353.619204 3966.068492 0.819797391 1.118509613 1.132712816 1.017883135 1.089623292 1.190027016 1.236573913 1.087361469 0.845577733 1 11.95349388 -7.241192311 22.818616 0.914904334 1.126342131 0.688588636 0.07213366 142.1445054 160197.8143 0.014593652 0.017856125 5.74E-08 7.241192311 0.211437797 MYASVLLITAMS(ph)LDR ddPTM_HeLa_CUDC101_4h_R1 2 MYASVLLITAMSLDR 15 0 G3V4Q5 G3V4Q5 LTB4R 1 0 MYASVLLIT(0.21)AMS(0.79)LDR;MYASVLLIT(0.026)AMS(0.974)LDR ; 123.11 0.0017046 267273000 2150.68 1548.53 1553.11 1502.16 1841.48 1650.59 1592.22 1797.27 1704.19 1665.08 TRUE FALSE FALSE 1898.580551 1596.238374 1637.075825 1563.424578 1705.637689 1619.107746 1653.632459 2001.863952 1633.942567 1655.17603 1.147056577 0.96439191 0.989064483 0.944566952 1.030487186 0.978208793 0.999067428 1.209456829 0.987171477 1 10.69276894 -7.240821049 24.86809539 1.069443391 1.011043297 0 0.08103142 1438.074336 1734486.778 0.014127605 0.017292425 5.74E-08 7.240821049 -0.058400095 IQALQQQADEAEDR ddPTM_HeLa_CUDC101_4h_R1 4 IQALQQQADEAEDR 14 0 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A590UK79;A0A590UJB9 P67936 TPM4 Tropomyosin alpha-4 chain 0 0 ;;; ;;; 278.35 1.06E-85 197889000 7681.6 6337.9 6485.4 6157.7 6509.1 6446.2 6426.5 6559.2 6777.3 6749.4 FALSE FALSE TRUE 6781.174493 6533.163187 6836.020341 6408.837622 6028.936661 6323.249475 6674.372258 7305.872815 6497.936825 6709.254269 1.010719556 0.973754001 1.018894212 0.955223541 0.898600116 0.942466811 0.994800911 1.088924718 0.968503587 1 12.7119367 -6.261497255 24.99993571 1.003287514 0.97088423 0.013430403 0.048140552 10.4336792 4508033.748 0.007273995 0.011594134 5.48E-07 6.261497255 -0.032403285 ALSS(ph)SVIR ddPTM_HeLa_CUDC101_4h_R1 1 ALSSSVIR 8 0 Q8NEJ9-2;Q8NEJ9;H0YJ17 Q8NEJ9-2 NGDN Neuroguidin 1 0 ALS(0.039)S(0.48)S(0.48)VIR 109.44 0.011859 10582000 2900.5 1951.2 1785.4 2332 2116.8 1808.3 1993.1 1653 2307.5 2236.5 TRUE FALSE FALSE 2560.507787 2011.314159 1881.924125 2427.10904 1960.647881 1773.80969 2069.974535 1841.170838 2212.383873 2223.197199 1.151723198 0.904694447 0.846494466 1.091720087 0.88190462 0.797864306 0.931080039 0.828163529 0.995136138 1 11.11842021 -7.240805139 22.8122843 1.071647058 0.899801031 0.386850802 0.085976485 181.8290357 201021.7101 0.015232364 0.018638908 5.74E-08 7.240805139 -0.171846027 IQEAGTEVVK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 2 IQEAGTEVVKAK 12 1 P40926;P40926-2;G3XAL0 P40926 MDH2 "Malate dehydrogenase, mitochondrial;Malate dehydrogenase" 0 1 ; IQEAGTEVVK(1)AK;IQEAGTEVVK(1)AK 178.32 7.16E-07 6686200 3658.8 3330.2 3011.4 2946.1 3962.7 3007.3 3400.3 3150.8 2917.4 3270.8 FALSE TRUE FALSE 3229.92101 3432.799515 3174.205393 3066.254692 3670.379516 2949.940763 3531.45071 3509.474336 2797.143537 3251.345136 0.993410689 1.055809018 0.976274514 0.943072656 1.128880313 0.907298561 1.086150674 1.07939151 0.860303481 1 11.66682099 T(ph)LSPTPSAEGYQDVR ddPTM_HeLa_CUDC101_4h_R1 1 TLSPTPSAEGYQDVR 15 0 O14639-3;O14639-5;J3QSX6;O14639-4;H0Y7N6;F6XFR5;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639;A0A494C1P1;A0A494C1G0 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 1 0 T(0.986)LS(0.014)PTPSAEGYQDVR 211.82 5.99E-23 21975000 1389.3 1040.2 1052.9 905.72 1529.3 1206.1 960.34 922.85 1323.6 1108.9 TRUE FALSE FALSE 1226.44836 1072.247329 1109.822959 942.6591765 1416.486586 1183.095652 997.3806355 1027.903514 1269.040648 1102.304213 1.1126224 0.972732678 1.006820935 0.855171526 1.285023289 1.073293232 0.904814318 0.932504386 1.151261723 1 10.10630672 -7.240475425 24.54281575 1.053182808 1.008315559 0.073512802 0.11745277 2183.572423 2556340.08 0.019568472 0.023955118 5.75E-08 7.240475425 -0.044867249 SFTSS(ph)SPSSPSR ddPTM_HeLa_CUDC101_4h_R1 1 SFTSSSPSSPSR 12 0 O94875-12;O94875-11;O94875-9;O94875-4;O94875-10;O94875-5;O94875-3;H7BXR3;O94875-8;H7BZX1;O94875-2;O94875-7;O94875;H7C1R7;H7BZK1 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 SFT(0.011)S(0.037)S(0.315)S(0.315)PS(0.197)S(0.125)PSR 109.39 0.0059069 357450000 6064.2 4890.7 4316 5013.2 5525.5 5005.4 4588.5 5115 4692.8 5322.3 TRUE FALSE FALSE 5353.363669 5041.37667 4549.336015 5217.659965 5117.894873 4909.930335 4765.479982 5697.270924 4499.360798 5290.642723 1.011855071 0.952885487 0.859883431 0.986205313 0.967348419 0.928040428 0.90073744 1.076857997 0.850437467 1 12.36922728 -7.240427838 8.293230744 1.005604404 0.948334733 0 0.07278826 0.281451459 97.80837404 0.008399977 0.010169935 5.75E-08 7.240427838 -0.057269671 FAS(ph)DDEHDEHDENGATGPVKR ddPTM_HeLa_CUDC101_4h_R1 9 FASDDEHDEHDENGATGPVKR 21 1 P05455 P05455 SSB Lupus La protein 1 0 FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(0.955)DDEHDEHDENGAT(0.045)GPVKR;FAS(0.999)DDEHDEHDENGAT(0.001)GPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR ;;;;;;;; 115.2 5.61E-06 2275713100 23158.35 21272.17 22032.07 20290.63 24069.07 21795.31 21100.06 20151.53 24910.78 20885.6 TRUE FALSE FALSE 20443.76332 21927.54034 23223.19035 21118.16959 22293.54266 21379.60078 21913.89638 22445.49872 23883.9471 20761.37152 0.984701964 1.056170124 1.118576888 1.01718567 1.073799129 1.029777862 1.055512944 1.081118302 1.150403146 1 14.34161413 -7.240187397 8.355341248 0.992769633 1.061265001 0 0.056385806 0.120456888 42.07697183 0.004185889 0.005069403 5.75E-08 7.240187397 0.068495368 YQEQGGEAS(ph)PQRTWEQQQEVVSR ddPTM_HeLa_CUDC101_4h_R1 1 YQEQGGEASPQRTWEQQQEVVSR 23 1 H0Y5J4;Q9UJU6-5;Q9UJU6 H0Y5J4 DBNL Drebrin-like protein 1 0 Y(0.002)QEQGGEAS(0.869)PQRT(0.128)WEQQQEVVSR 79.94 0.00035343 26251000 381.93 559.98 662.87 505.97 616.61 490.43 476.03 551.56 435.93 506.96 TRUE FALSE FALSE 337.1607444 577.2323201 698.7067573 526.6056436 571.1239088 481.0758649 494.3906366 614.3473609 417.9607809 503.9445794 0.6690433 1.145428175 1.38647539 1.044967374 1.133306979 0.954620576 0.98104168 1.219077228 0.829378463 1 8.977121274 -7.240134157 24.54908635 0.84371489 1.119044798 0.483469617 0.137525821 505.3875755 582336.6904 0.0280058 0.034280704 5.75E-08 7.240134157 0.275329909 IQFK(ac)PDDGISPER ddPTM_HeLa_CUDC101_4h_R1 1 IQFKPDDGISPER 13 1 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 0 1 IQFK(1)PDDGISPER 128.68 0.0018349 513180 146.76 107.48 0 0 165.33 200.27 0 117.05 198.91 0 FALSE TRUE FALSE 129.5570153 110.7913314 0 0 153.1339353 196.4501834 0 130.3744989 190.7108456 0 0 IQFK(ac)PDDGTTPER ddPTM_HeLa_CUDC101_4h_R1 2 IQFKPDDGTTPER 13 1 Q96AE4;E9PEB5;Q96AE4-2 Q96AE4 FUBP1 Far upstream element-binding protein 1 0 1 ; IQFK(1)PDDGTTPER;IQFK(1)PDDGTTPER 166.11 2.06E-05 3688500 2679.2 1222.37 1103.45 868.95 2165.8 2147.71 2514.2 2123.9 2240.77 1721.92 FALSE TRUE FALSE 2365.148237 1260.029771 1163.105845 904.3895369 2006.033249 2106.74601 2611.173536 2365.676191 2148.404512 1711.677943 1.381771756 0.736137178 0.679512083 0.528364311 1.171968861 1.230807477 1.525505161 1.382080198 1.255145292 1 10.74119557 -5.037805283 2.681610777 1.061054975 1.450828527 0.317398574 0.265307173 0.348980941 4.934010743 0.045821796 0.15309818 9.17E-06 5.037805283 0.389773553 T(ph)FSDESNVL ddPTM_HeLa_CUDC101_4h_R1 1 TFSDESNVL 9 0 Q8NB49;H7C113 Q8NB49 ATP11C Phospholipid-transporting ATPase IG 1 0 T(0.868)FS(0.132)DESNVL 134.25 0.012717 1048300 1643.7 832.86 713.12 1059.9 818.65 1189.5 980.58 1248.3 893.39 983.29 TRUE FALSE FALSE 1451.027978 858.5194294 751.6734243 1103.127303 758.2598205 1166.812269 1018.401299 1390.401426 856.5640861 977.4413473 1.484516674 0.878333449 0.769021513 1.128586699 0.775759919 1.193741468 1.041905278 1.422490904 0.876332977 1 9.932866324 -7.240090749 24.84886983 1.228799564 1.020712802 0 0.242702701 1163.5655 1354340.441 0.041813355 0.051184799 5.75E-08 7.240090749 -0.208086762 S(ph)PVSPLAAQGIPLPAQLTK ddPTM_HeLa_CUDC101_4h_R1 2 SPVSPLAAQGIPLPAQLTK 19 0 K7EIF1;K7EPF0;K7EQS3;K7EM48;K7EN63;Q96SI1-2;Q96SI1 K7EIF1 KCTD15 BTB/POZ domain-containing protein KCTD15 1 0 S(0.999)PVS(0.001)PLAAQGIPLPAQLTK;S(0.994)PVS(0.006)PLAAQGIPLPAQLTK ; 176.11 8.39E-08 54861000 5513 4054 4021.5 3929.5 4335.5 3861.8 3721.3 4291 4846.1 4944.1 TRUE FALSE FALSE 4866.774497 4178.898935 4238.914454 4089.761995 4015.678803 3788.142599 3864.831788 4779.470095 4646.341707 4914.692273 0.990250096 0.850286997 0.862498447 0.832150167 0.817076346 0.770779204 0.786383271 0.972486135 0.945398297 1 12.26288537 -7.239830634 3.628363342 0.996280225 0.834526865 0.567615514 0.054001035 0.096338776 2.718113625 0.008564705 0.010247338 5.76E-08 7.239830634 -0.161753361 CQTAEADSES(ph)DHEVPEPESEMK ddPTM_HeLa_CUDC101_4h_R1 2 CQTAEADSESDHEVPEPESEMK 22 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 CQT(0.001)AEADS(0.184)ES(0.816)DHEVPEPESEMK;CQTAEADS(0.071)ES(0.928)DHEVPEPESEMK ; 114.85 4.91E-06 23178000 6844.7 4893.2 4997.2 4748.9 6320.8 5220.2 4553.9 5028 5779.6 5308.3 TRUE FALSE FALSE 6042.374642 5043.953692 5267.363748 4942.580668 5854.527177 5120.633382 4729.545448 5600.367196 5541.362442 5276.725996 1.145099186 0.955886983 0.998225747 0.936675634 1.10949994 0.970418662 0.896303021 1.061333714 1.050151637 1 12.36542736 -7.239825126 24.87908247 1.068519065 0.988313619 0.214216627 0.06596757 914.5230276 1052662.161 0.012498274 0.015299605 5.76E-08 7.239825126 -0.080205446 S(ph)PGDFTSAAQLASTPFHK ddPTM_HeLa_CUDC101_4h_R1 1 SPGDFTSAAQLASTPFHK 18 0 A0A590UJ99;O43683-2;O43683-3;O43683 A0A590UJ99 BUB1 Mitotic checkpoint serine/threonine-protein kinase BUB1 1 0 S(0.902)PGDFT(0.095)S(0.003)AAQLASTPFHK 125.77 4.91E-05 18494000 1704.1 1035.6 782.08 809.19 1678.1 1138 956.14 530.15 1409.7 1532.8 TRUE FALSE FALSE 1504.347981 1067.505609 824.3616105 842.1922658 1554.309906 1116.294546 993.0186401 590.5001331 1351.591569 1523.682837 0.987310446 0.700608803 0.541032287 0.552734628 1.020100685 0.732629205 0.651722665 0.387547932 0.887055715 1 10.57334691 -7.238992924 4.604505415 0.994919736 0.661517504 0.434181386 0.157201471 0.124604951 6.868155091 0.026371096 0.031660576 5.77E-08 7.238992924 -0.333402232 T(ph)MKHVMK ddPTM_HeLa_CUDC101_4h_R1 1 TMKHVMK 7 1 A0A2R8Y4P5;A0A087WXU0;A0A2R8Y4J4;Q9NWS8-2;Q9NWS8 A0A2R8Y4P5 RMND1 Required for meiotic nuclear division protein 1 homolog 1 0 T(1)MKHVMK 62.842 0.0024747 0 916.21 2450 2537.3 2989.7 2030.2 1667.8 1823.5 1589.2 1769.5 2194.7 TRUE FALSE FALSE 808.8132527 2525.481596 2674.474113 3111.632889 1880.436191 1635.989494 1893.833006 1770.108104 1696.560461 2181.645827 0.370735361 1.157603844 1.225897476 1.426277744 0.861934677 0.749887756 0.868075369 0.811363642 0.777651643 1 11.0912012 -7.236802639 24.95212046 0.702847219 1.01673825 0.238465155 0.243917998 977.2764279 989787.8942 0.052272227 0.064004943 5.80E-08 7.236802639 0.313891031 IQNWHEEHR ddPTM_HeLa_CUDC101_4h_R1 1 IQNWHEEHR 9 0 A0A2R8Y7M3;A0A2R8Y5S7;P35241-4;P35241;P35241-5 A0A2R8Y7M3 RDX Radixin 0 0 79.986 0.032933 34934000 1126.9 835.75 778.85 1118.3 985.01 793.53 884 818.83 771.51 755.27 FALSE FALSE TRUE 994.8064903 861.4984669 820.9569869 1163.909108 912.3477747 778.3947374 918.0961761 912.0422974 739.7080313 750.7776205 1.325034821 1.147474889 1.093475571 1.550271447 1.215203743 1.036784683 1.22286034 1.214796862 0.985255835 1 9.552241836 -9.471368187 1.160058405 0.997581061 1.23317333 0.327191148 0.132717151 0.50985437 1.207047815 0.098024075 0.023106206 3.38E-10 9.471368187 0.23559227 S(ph)GS(ph)S(ph)VSSRSYSPERS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 SGSSVSSRSYSPERSK 16 2 Q8NEY8;F8W6A0;F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;F8WF16;B7Z8L1;Q8NEY8-5;Q8NEY8-6;F8VWU8 Q8NEY8 PPHLN1 Periphilin-1 4 0 S(0.744)GS(0.744)S(0.744)VS(0.744)S(0.018)RS(0.015)Y(0.057)S(0.07)PERS(0.863)K 48.14 0.0033726 0 171.64 126.05 117.28 0 177.08 164.23 114.92 205.92 234.4 142.06 TRUE FALSE FALSE 151.5206194 129.9334511 123.6205116 0 164.0171612 161.0975864 119.3525029 229.3611004 224.7379328 141.2150208 1.072978062 0.920110696 0.875406248 0 1.161471069 1.140796393 0.845182773 1.624197618 1.59145912 1 7.141749744 -7.236674202 13.95566234 1.034460253 0.912469691 0.032224239 0.420971598 13.15370508 7407.625578 0.062628254 0.076494235 5.80E-08 7.236674202 -0.121990562 SKS(ph)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ddPTM_HeLa_CUDC101_4h_R1 1 SKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 36 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.211)KS(0.444)PLPPEEEAKDEEEDQT(0.341)LVNLDT(0.003)Y(0.001)TSDLHFQVSK 57.113 0.00024616 14645000 3351.2 2381.2 1954.8 2002.2 3154.2 2928.9 2602.6 1715.9 3079.3 2637.2 TRUE FALSE FALSE 2958.377416 2454.56195 2060.482401 2083.85837 2921.52095 2873.036112 2702.983154 1911.23112 2952.369951 2621.513817 1.128499647 0.93631471 0.785989525 0.794906499 1.114440416 1.095945439 1.03107721 0.729056283 1.126208045 1 11.35618443 -7.236313483 21.53860779 1.060680371 0.934059509 0.234849965 0.128082744 187.0973333 160384.2307 0.022586713 0.027649977 5.80E-08 7.236313483 -0.126620862 LQQETAELEES(ph)VESGK ddPTM_HeLa_CUDC101_4h_R1 1 LQQETAELEESVESGK 16 0 P42566;P42566-2 P42566 EPS15 Epidermal growth factor receptor substrate 15 1 0 LQQETAELEES(1)VESGK 156.67 1.75E-07 0 478.43 391.63 279.55 303.04 507.15 338.98 434.34 293.92 372.54 457.47 TRUE FALSE FALSE 422.3491607 403.6956561 294.6633186 315.3992811 469.7385549 332.5145213 451.0926393 327.3786647 357.1837435 454.7489481 0.928752364 0.887733018 0.647969214 0.693567918 1.032962378 0.731204597 0.99195972 0.719910769 0.7854526 1 8.82892649 -7.236291683 2.592896437 0.969194469 0.812473183 0.047301622 0.132253809 0.280477867 3.636923621 0.020394575 0.024398112 5.80E-08 7.236291683 -0.156721285 S(ph)PSWQRPNQGVPSTGR ddPTM_HeLa_CUDC101_4h_R1 3 SPSWQRPNQGVPSTGR 16 1 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4;Q96HC4-6;A0A0A0MSP3 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 S(0.976)PS(0.024)WQRPNQGVPSTGR;S(0.85)PS(0.15)WQRPNQGVPSTGR;S(0.991)PS(0.009)WQRPNQGVPSTGR ;; 171.78 3.15E-06 111480000 2683.99 1933.97 2008.69 1968.14 1766.3 2060.02 1961.61 2021.16 1931.7 2109.93 TRUE FALSE FALSE 2369.376761 1993.553323 2117.285857 2048.409256 1636.003568 2020.728551 2037.269955 2251.240685 1852.074508 2097.380043 1.12968404 0.950496945 1.0094908 0.976651448 0.780022473 0.963453694 0.971340393 1.073358494 0.883041924 1 11.03437258 -7.236190926 23.58741334 1.061239687 0.956746195 0 0.094071423 390.920338 365202.401 0.013998011 0.017139006 5.81E-08 7.236190926 -0.104493491 KVASGVLS(ph)PPPAAPPPSSSSVPEAGGPPIKK ddPTM_HeLa_CUDC101_4h_R1 1 KVASGVLSPPPAAPPPSSSSVPEAGGPPIKK 31 2 Q8IXM2-2;F8W038;F8W1H0;H0YIS7;Q8IXM2;Q8IXM2-3 Q8IXM2-2 BAP18;C17orf49;RNASEK-C17orf49 Chromatin complexes subunit BAP18 1 0 KVAS(0.017)GVLS(0.979)PPPAAPPPS(0.004)SSSVPEAGGPPIKK 72.028 1.12E-05 16711000 2324.4 2128.5 1840.8 2024.8 2440.3 1813.3 1490.9 653.52 2051.8 2604.3 TRUE FALSE FALSE 2051.937356 2194.076562 1940.319216 2107.380096 2260.283931 1778.714324 1548.404512 727.9140752 1967.223936 2588.809508 0.792618132 0.847523371 0.749502507 0.814034439 0.873097817 0.687078102 0.598114503 0.281177148 0.759895207 1 11.3380731 -4.267101735 0.806344314 0.884930432 2.72E-33 0.809204455 0.080431025 0.815884617 0.381462172 0.015292181 0.643864409 5.41E-05 4.267101735 -0.884930432 down IQPFDDDEDEDIWEDSDTR ddPTM_HeLa_CUDC101_4h_R1 2 IQPFDDDEDEDIWEDSDTR 19 0 T1ECW5;O75170-6;O75170-2;O75170-4;O75170-3;O75170-5;O75170;A0A0A0MSJ8 T1ECW5 PPP6R2 Serine/threonine-protein phosphatase 6 regulatory subunit 2 0 0 ; ; 211.75 1.38E-23 23046000 4915.1 4415.5 4412 4284.4 4908.3 4676.4 4140.9 4283.1 4303.5 4064.7 FALSE FALSE TRUE 4338.959429 4551.536321 4650.526066 4459.136351 4546.224488 4587.205461 4300.6159 4770.670791 4126.107908 4040.522984 1.073860846 1.126472078 1.150971318 1.103603758 1.125157438 1.13529993 1.064371102 1.180706263 1.021181645 1 11.98032632 -8.087878805 0.674491429 1.006534224 1.126790871 0.690529905 0.030386201 0.235440808 0.238493602 0.011937297 0.007635651 8.17E-09 8.087878805 0.120256647 IQPFHFIK(ac)DPK ddPTM_HeLa_CUDC101_4h_R1 2 IQPFHFIKDPK 11 1 H3BVA4;H3BUC1;Q8NEZ5-3;Q8NEZ5 H3BVA4 FBXO22 F-box only protein 22 0 1 ; IQPFHFIK(1)DPK;IQPFHFIK(1)DPK 107.03 0.0065773 792980 1305.87 845.98 776.75 868.3 1344.4 947.56 1393.27 741.94 933.57 687.09 FALSE TRUE FALSE 1152.797898 872.0436411 818.7434545 903.7130271 1245.22629 929.4868717 1447.008891 826.3994506 895.0878495 683.0031581 1.687836849 1.276778344 1.198740364 1.323146191 1.823163298 1.360882246 2.118597657 1.209949677 1.310517878 1 9.415748439 -9.447688302 1.010599458 0.978775771 1.520703802 0.143927166 0.297802303 0.561488369 0.958458024 0.232645566 0.049414629 3.57E-10 9.447688302 0.541928031 STQIENQHQGAQDTSDLMS(ph)PSKR ddPTM_HeLa_CUDC101_4h_R1 3 STQIENQHQGAQDTSDLMSPSKR 23 1 H0YBW3;Q9NVR2 H0YBW3 INTS10 Integrator complex subunit 10 1 0 STQIENQHQGAQDT(0.007)S(0.007)DLMS(0.493)PS(0.493)KR;STQIENQHQGAQDT(0.067)S(0.256)DLMS(0.536)PS(0.141)KR;STQIENQHQGAQDT(0.176)S(0.127)DLMS(0.557)PS(0.14)KR ;; 88.394 0.00015805 15566900 2988.24 1988.12 2178.64 1944.39 2176.58 2025.01 1969.56 1695.68 2588.38 2835 TRUE FALSE FALSE 2637.963037 2049.371621 2296.423868 2023.690629 2016.01803 1986.386308 2045.526589 1888.709357 2481.685881 2818.137294 0.936066189 0.727207871 0.814872956 0.718095117 0.715372538 0.704857891 0.725843483 0.67019778 0.880612129 1 11.46052618 -7.235757095 0.94675564 0.98590698 0.706859885 0.774648486 0.050831897 0.094650686 0.168273819 0.008243644 0.009941725 5.81E-08 7.235757095 -0.279047095 ESEDDPES(ph)EPDDHEK ddPTM_HeLa_CUDC101_4h_R1 4 ESEDDPESEPDDHEK 15 0 P16383-3;P16383-4;P16383 P16383-3 GCFC2 GC-rich sequence DNA-binding factor 2 1 0 ES(0.002)EDDPES(0.998)EPDDHEK;ESEDDPES(1)EPDDHEK;ESEDDPES(1)EPDDHEK;ESEDDPES(1)EPDDHEK ;;; 157.47 5.53E-05 106255600 29340.3 27500.2 28435.1 26960.5 30717.8 27347.2 25869.7 26717 26937.1 27864.3 TRUE FALSE FALSE 25901.07451 28347.44857 29972.38752 28060.06572 28451.80909 26825.59772 26867.50299 29758.35529 25826.74134 27698.5619 0.935105389 1.023426727 1.082091829 1.013051357 1.027194451 0.968483411 0.969996316 1.074364633 0.932421742 1 14.75752345 -7.235701609 24.11005907 0.969355322 1.020640143 0.361629744 0.039411053 511.3741562 479034.1866 0.006998925 0.008569987 5.81E-08 7.235701609 0.051284821 S(ph)REPTGVEENKTDSLFVLPSR ddPTM_HeLa_CUDC101_4h_R1 1 SREPTGVEENKTDSLFVLPSR 21 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 S(0.576)REPT(0.424)GVEENKTDSLFVLPSR 50.232 0.021985 5124800 336.77 184.13 150.73 152.97 209.94 163.57 252.54 124.21 237.62 276.83 TRUE FALSE FALSE 297.2943311 189.8028271 158.8789197 159.2087778 194.4531445 160.4501748 262.2805524 138.3495643 227.825203 275.1834028 1.080349789 0.689732103 0.577356476 0.57855516 0.706631077 0.583066323 0.953111814 0.502754028 0.827903139 1 8.104249649 -7.235694157 7.178303492 1.038016445 0.659774835 0.516063776 0.134292797 0.078035911 16.65939574 0.018459137 0.022370388 5.81E-08 7.235694157 -0.378241609 LKNGFPHPEPDCNPSEAAS(ph)EESNS(ph)EIEQEIPVEQK ddPTM_HeLa_CUDC101_4h_R1 1 LKNGFPHPEPDCNPSEAASEESNSEIEQEIPVEQK 35 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 2 0 LKNGFPHPEPDCNPS(0.015)EAAS(0.544)EES(0.544)NS(0.896)EIEQEIPVEQK 45.685 0.015906 64786000 973.38 977.43 1148.7 935.67 1039.3 1052.5 1010.1 881.01 926.32 853.64 TRUE FALSE FALSE 859.2818719 1007.54346 1210.802197 973.8306669 962.6329096 1032.425316 1049.059895 981.3006172 888.1366975 848.5625113 1.012632376 1.187353255 1.42688627 1.147623957 1.134427808 1.216675616 1.236278861 1.156427021 1.046636736 1 9.728877133 -7.235674205 4.785258888 1.005453589 1.219788793 0.564741401 0.078581943 0.094040912 5.73926397 0.012989215 0.015634229 5.81E-08 7.235674205 0.214335204 EAATT(ph)WGLS(ph)T(ph)Y(ph)SHGK ddPTM_HeLa_CUDC101_4h_R1 1 EAATTWGLSTYSHGK 15 0 Q6ZUB1 Q6ZUB1 SPATA31E1 Spermatogenesis-associated protein 31E1 4 0 EAAT(0.094)T(0.908)WGLS(0.947)T(0.838)Y(0.866)S(0.347)HGK 50.024 0.003283 0 442.27 242.11 202.46 204.55 273.84 270.33 196.33 264.01 398.39 359.12 TRUE FALSE FALSE 390.427781 249.5691221 213.4056 212.8924331 253.6393688 265.1739057 203.9025139 294.0638312 381.9681956 356.9839383 1.093684447 0.699104625 0.597801686 0.596364179 0.710506389 0.742817469 0.571181199 0.823745272 1.069987063 1 8.479715355 -7.235646289 7.674611129 1.04427901 0.670361605 0.84001052 0.07536087 0.059950711 14.97894497 0.012523389 0.015193255 5.81E-08 7.235646289 -0.373917405 GHYEVTGS(ph)DDETGKLQGSGVSLASK ddPTM_HeLa_CUDC101_4h_R1 4 GHYEVTGSDDETGKLQGSGVSLASK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHY(0.004)EVT(0.145)GS(0.85)DDET(0.001)GKLQGSGVSLASK;GHY(0.005)EVT(0.088)GS(0.906)DDET(0.001)GKLQGSGVSLASK;GHY(0.002)EVT(0.029)GS(0.485)DDET(0.485)GKLQGSGVSLASK;GHYEVT(0.005)GS(0.995)DDETGKLQGSGVSLASK ;;; 91.583 8.53E-06 474204000 14337.8 11378.3 10721.4 10739.7 12063 11841.8 11778.5 10377.3 12322.6 12911.7 TRUE FALSE FALSE 12657.14482 11728.85194 11301.03131 11177.71139 11173.13652 11615.93739 12232.80069 11558.60989 11814.65721 12834.90063 0.986150589 0.913824912 0.880492311 0.870884139 0.8705277 0.90502745 0.95308885 0.900560917 0.92051022 1 13.64778451 -7.234810309 3.250981858 0.994208725 0.897208056 0.452236285 0.032202756 0.085031954 1.825384518 0.004262408 0.005106455 5.82E-08 7.234810309 -0.097000669 AQLEPVAS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 4 AQLEPVASPAK 11 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 AQLEPVAS(1)PAK;AQLEPVAS(1)PAK;AQLEPVAS(1)PAK;AQLEPVAS(1)PAK ;;; 154.1 0.00033303 3350750000 31570.5 23313.5 22122.9 23639 24167 23295.1 23184.4 24621.1 23810.9 25349.2 TRUE FALSE FALSE 27869.85385 24031.7613 23318.93089 24603.1006 22384.24856 22850.78478 24078.63007 27423.8665 22829.40462 25198.42183 1.106015846 0.953701048 0.925412355 0.976374662 0.888319463 0.906833965 0.955561036 1.088316827 0.905985493 1 14.62104576 -7.234771731 22.08010683 1.050063025 0.951386856 0 0.072408203 143.4301183 118755.9711 0.010484168 0.012836553 5.82E-08 7.234771731 -0.098676169 SATDGNTSTT(ph)PPTSAKK ddPTM_HeLa_CUDC101_4h_R1 1 SATDGNTSTTPPTSAKK 17 1 A0A669KAX4;Q13620-1;Q13620;A0A669KAU9;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 1 0 SATDGNTS(0.005)T(0.033)T(0.955)PPT(0.003)S(0.004)AKK 101.17 0.0284 14197000 3982.6 3523.9 3945.4 3784.9 4623.5 3750.3 3001.4 3916.7 4357.2 3317.8 TRUE FALSE FALSE 3515.765665 3632.467182 4158.700258 3939.264582 4282.433616 3678.769276 3117.165003 4362.561296 4177.594372 3298.065578 1.066008417 1.101393255 1.260951355 1.194416693 1.298468304 1.115432422 0.945149491 1.32276366 1.266680202 1 11.68740437 -7.233926595 1.915987418 1.026695088 1.1794868 0 0.127065554 0.300126649 2.088027457 0.018672483 0.022373256 5.84E-08 7.233926595 0.152791713 S(ph)FEEKVENLK ddPTM_HeLa_CUDC101_4h_R1 2 SFEEKVENLK 10 1 H0YC42;P55327-2;P55327-4;P55327;P55327-7;P55327-5;P55327-6;P55327-3;E5RK35 H0YC42 TPD52 Tumor protein D52 1 0 S(1)FEEKVENLK;S(1)FEEKVENLK ; 117.27 0.02823 72826000 3025.2 1853.51 1529.07 1835.79 2043.85 2343.9 2506.8 2121.4 2379.3 2043.64 TRUE FALSE FALSE 2670.590642 1910.614446 1611.736149 1910.661451 1893.079257 2299.194013 2603.488116 2362.891601 2281.224247 2031.484338 1.314600655 0.940501686 0.793378575 0.940524825 0.931869974 1.131780329 1.281569376 1.163135524 1.122934695 1 10.98831853 -7.233721461 24.97064922 1.148561453 1.024130929 0.118673306 0.149406852 1394.182144 1255999.077 0.030985815 0.037945618 5.84E-08 7.233721461 -0.124430524 NVSAGTQDVPS(ph)PPSDY(ph)VER ddPTM_HeLa_CUDC101_4h_R1 1 NVSAGTQDVPSPPSDYVER 19 0 A0A0G2JMZ8;Q16625-4;Q16625-2;Q16625-3;Q16625 A0A0G2JMZ8 OCLN Occludin 2 0 NVSAGT(0.001)QDVPS(0.861)PPS(0.139)DY(0.999)VER 75.89 0.0026082 0 5361.4 5284.8 5059.3 5317.5 6067.9 5134.9 4937.9 4807.5 5793.7 5344.1 TRUE FALSE FALSE 4732.944819 5447.618424 5332.821062 5534.370634 5620.283106 5036.960338 5128.356457 5354.766367 5554.881234 5312.313056 0.890938612 1.025470142 1.003860466 1.041800545 1.057972873 0.948167076 0.965371657 1.007991493 1.045661499 1 12.37512445 -7.233549217 24.98736878 0.948498782 1.006502901 0 0.049764475 812.8291493 728231.1453 0.008477479 0.010381469 5.84E-08 7.233549217 0.058004119 IQVEQTRDEDLDTDSLD ddPTM_HeLa_CUDC101_4h_R1 2 IQVEQTRDEDLDTDSLD 17 1 V9GYT7 V9GYT7 PSIP1 0 0 ; ; 202.32 2.55E-15 66874000 3725.2 3500.7 3492.8 3161.4 3759 3542.5 3097.1 3499.1 4003.5 3886 FALSE FALSE TRUE 3288.537703 3608.552418 3681.631333 3290.335557 3481.706059 3474.932715 3216.556184 3897.4234 3838.474035 3862.885899 0.851316293 0.934159722 0.953077939 0.85178171 0.901322522 0.89956908 0.832682163 1.008940855 0.993680408 1 11.91546335 -9.500905376 1.216604837 1.000650903 0.896737353 0.343203495 0.050432834 0.395361398 1.036712128 0.034609491 0.008174051 3.16E-10 9.500905376 -0.10391355 IQVLVEPDHFK ddPTM_HeLa_CUDC101_4h_R1 2 IQVLVEPDHFK 11 0 P17931 P17931 LGALS3 Galectin-3 0 0 ; ; 110.64 0.0031091 1193920 1589.68 1228.88 1059.86 1269.7 819.92 976 1207.65 1134.26 967.73 1325.35 FALSE FALSE TRUE 1403.34012 1266.740336 1117.159238 1321.483854 759.4361351 957.3844261 1254.229465 1263.379574 927.8397598 1317.466759 1.065180666 0.961497 0.847960094 1.003049105 0.576436658 0.726685831 0.952000843 0.958946072 0.704260471 1 10.36355085 -6.746947537 1.59851719 1.031113862 0.82731797 0 0.156697318 0.299849009 1.557207043 0.021083793 0.030994823 1.79E-07 6.746947537 -0.203795892 IQVWHEEHR ddPTM_HeLa_CUDC101_4h_R1 2 IQVWHEEHR 9 0 P26038 P26038 MSN Moesin 0 0 ; ; 90.15 0.021537 111023000 7258.2 5770.1 3205.1 5777.2 4484.4 4992.2 4740.7 4532 2599.7 2059.2 FALSE FALSE TRUE 6407.404799 5947.869942 3378.377401 6012.819187 4153.594746 4896.982103 4923.550387 5047.904561 2492.539266 2046.951787 3.130217741 2.905720584 1.650443075 2.937450323 2.029161006 2.392328991 2.405308429 2.466059334 1.217683426 1 10.99926141 -9.458065367 1.186908955 0.99797782 2.533604334 0.630919966 0.420526794 0.24469494 0.615364364 0.307015376 0.075605539 3.48E-10 9.458065367 1.535626513 LEGDSDDLLEDS(ph)DSEEHSR ddPTM_HeLa_CUDC101_4h_R1 2 LEGDSDDLLEDSDSEEHSR 19 0 A0A3B3IUB9;Q9NR09 A0A3B3IUB9 BIRC6 Baculoviral IAP repeat-containing protein 6 1 0 LEGDSDDLLEDS(0.999)DS(0.001)EEHSR;LEGDSDDLLEDS(0.994)DS(0.006)EEHSR ; 143.17 3.65E-05 92009000 7915.3 4446.4 4455.2 4376.7 5296 5221.3 4958.6 3690.7 6124.8 5132 TRUE FALSE FALSE 6987.480533 4583.388314 4696.061588 4555.200744 4905.324631 5121.712402 5149.854863 4110.83437 5872.333152 5101.474636 1.369698182 0.898443811 0.920530224 0.892918434 0.961550332 1.003967042 1.009483577 0.805812959 1.151105037 1 12.31669862 -7.233354911 24.7495371 1.174579709 0.933329546 0.559412424 0.099980132 493.2306788 434661.6552 0.024020107 0.029415225 5.84E-08 7.233354911 -0.241250163 LGHPEALSAGT(ph)GSPQPPSFTYAQQR ddPTM_HeLa_CUDC101_4h_R1 1 LGHPEALSAGTGSPQPPSFTYAQQR 25 0 Q15942-2;Q15942;H0Y2Y8;H7C3D3 Q15942-2 ZYX Zyxin 1 0 LGHPEALS(0.131)AGT(0.434)GS(0.434)PQPPSFTYAQQR 58.516 0.0091698 63479000 919.89 616.61 559.43 552.48 765.22 675.85 788.45 356 565.04 690.96 TRUE FALSE FALSE 812.0618887 635.6070232 589.674478 575.0125224 708.7712451 662.9592873 818.8607806 396.525601 541.748812 686.8501392 1.182298499 0.925394037 0.858519849 0.837173191 1.031915413 0.965216791 1.192197153 0.577310214 0.788743834 1 9.423851548 -7.233274371 21.3688107 1.086085383 0.92493073 0 0.179591684 144.7895574 109851.27 0.025045323 0.030665789 5.84E-08 7.233274371 -0.161154653 YFY(ph)FY(ph)NT(ph)GLQNQR ddPTM_HeLa_CUDC101_4h_R1 1 YFYFYNTGLQNQR 13 0 A0A499FJL1;P48147 A0A499FJL1 PREP Prolyl endopeptidase 3 0 YFY(1)FY(1)NT(1)GLQNQR 91.307 0.019062 35789000 8666.3 9298.9 8550.9 8491.4 10327 9336.5 8589.4 8572.3 9111.3 9318.7 TRUE FALSE FALSE 7650.449451 9585.388087 9013.187519 8837.715995 9565.197784 9158.421818 8920.696035 9548.135982 8735.728358 9263.271958 0.825890623 1.034773472 0.973002581 0.954059865 1.032593864 0.98868109 0.963017827 1.030751988 0.943049972 1 13.17730615 -7.233249242 24.9988764 0.917781668 0.993922971 0.325459161 0.048344833 834.8096318 740306.1549 0.011325346 0.013869125 5.84E-08 7.233249242 0.076141303 VLSSAAS(ph)LPGSELPSSRPEGSQGGELSR ddPTM_HeLa_CUDC101_4h_R1 2 VLSSAASLPGSELPSSRPEGSQGGELSR 28 1 O15027;O15027-5;A0A0C4DH09;Q8N9G1 O15027 SEC16A Protein transport protein Sec16A 1 0 VLS(0.02)S(0.045)AAS(0.79)LPGS(0.038)ELPS(0.034)S(0.038)RPEGS(0.033)QGGELS(0.002)R;VLS(0.006)S(0.017)AAS(0.625)LPGS(0.031)ELPS(0.09)S(0.09)RPEGS(0.138)QGGELS(0.003)R ; 62.57 0.0010183 111870000 1857.54 1082.98 962.89 1211.87 1127.47 989.62 1260.33 1333.91 1087.61 1232.35 TRUE FALSE FALSE 1639.801977 1116.34533 1014.946746 1261.295297 1044.298784 970.7446473 1308.94135 1485.756923 1042.778255 1225.019927 1.338592084 0.911287486 0.828514478 1.029612065 0.852474936 0.792431719 1.06850617 1.212843064 0.851233708 1 10.2585895 -7.233152335 24.86500792 1.15989072 0.94840572 0 0.171171369 705.2164973 619903.3867 0.028514673 0.034919313 5.85E-08 7.233152335 -0.211485 IRDGWQVEEADDWLR ddPTM_HeLa_CUDC101_4h_R1 1 IRDGWQVEEADDWLR 15 1 E9PK47;P06737-2;P06737 E9PK47 PYGL "Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, liver form" 0 0 178.67 1.88E-07 3752700 1009 1004 878.32 711.6 1002.9 956.96 779.64 907.27 1033.4 653.77 FALSE FALSE TRUE 890.7265495 1034.93205 925.804636 740.6221238 928.9180651 938.7075824 809.710976 1010.549949 990.8028146 649.881347 1.370598731 1.592493853 1.424574871 1.139626683 1.429365636 1.444429182 1.245936631 1.55497608 1.524590326 1 9.34403253 -8.960599478 0.775629129 0.997813082 1.394989337 0 0.203689475 0.366972651 0.405225225 0.084175369 0.026340348 1.09E-09 8.960599478 0.397176256 IREEFPDR ddPTM_HeLa_CUDC101_4h_R1 3 IREEFPDR 8 1 P04350;K7ESM5;Q9BUF5;M0QYM7;M0R042;K7ES63 P04350 TUBB4A;TUBB6 Tubulin beta-4A chain;Tubulin beta-6 chain 0 0 ;; ;; 128.12 0.00052937 64059000 11897.4 8962.2 8413.5 9254.5 9827.6 9430.7 8957.1 9366.4 9281.2 8325.3 FALSE FALSE TRUE 10502.80481 9238.314759 8868.359259 9631.938511 9102.637527 9250.82511 9302.578347 10432.63312 8898.625008 8275.780745 1.269101385 1.116307336 1.071603941 1.163870674 1.099912843 1.117819019 1.124072596 1.260622222 1.075261088 1 13.01467971 -9.621639209 1.447091801 1.000345989 1.16343629 0.299341882 0.065984574 0.322901163 1.218517548 0.050314171 0.011622992 2.39E-10 9.621639209 0.163090301 IREEYPDR ddPTM_HeLa_CUDC101_4h_R1 4 IREEYPDR 8 1 Q5JP53;P07437;Q5ST81;A0A075B736;Q5SQY0;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;P68371;Q3ZCM7;Q9BVA1;Q13885;Q9H4B7 Q5JP53;P68371;Q9BVA1;Q9H4B7 TUBB;TUBB8;TUBB4B;TUBB2B;TUBB2A;TUBB1 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-1 chain 0 0 ;;; ;;; 154.12 0.002423 2499554000 21497.9 17703.4 15803 18269.4 16480.5 16764.4 14851.9 15612.7 14810.1 14024.5 FALSE FALSE TRUE 18977.94875 18248.82077 16657.35798 19014.5051 15264.76635 16444.647 15424.74276 17389.98666 14199.62141 13941.08165 1.361296722 1.308996047 1.194839712 1.363918925 1.094948493 1.179581858 1.106423672 1.247391493 1.018545172 1 13.76705488 -9.522616962 1.29864802 1.000921241 1.243108939 0.493960405 0.0895966 0.320166404 0.972550131 0.067536667 0.016465384 3.00E-10 9.522616962 0.242187698 IRELEEAMAGER ddPTM_HeLa_CUDC101_4h_R1 1 IRELEEAMAGER 12 1 Q03252 Q03252 LMNB2 Lamin-B2 0 0 113.61 0.00037802 0 1166.9 1127.3 722.31 887.1 1139.2 925.81 841.23 698.39 810.08 1098.8 FALSE FALSE TRUE 1030.117751 1162.030777 761.3602635 923.2797724 1055.163486 908.1517168 873.6765229 777.8918946 776.6881595 1092.264289 0.943103021 1.063873267 0.697047657 0.845289718 0.966033126 0.831439539 0.799876488 0.71218285 0.711080796 1 10.09310626 -1.48466895 0.175093559 1.021757133 1.06E-11 0 0.126095754 32.89863883 0.408880534 0.124154399 8.623917612 0.032759031 1.48466895 -1.021757133 IRLDETDDPDDYGDR ddPTM_HeLa_CUDC101_4h_R1 1 IRLDETDDPDDYGDR 15 1 P07384 P07384 CAPN1 Calpain-1 catalytic subunit 0 0 179.67 5.12E-16 0 1414.6 962.86 975.46 948.52 882.59 1219.9 935.69 853.73 1186 1022.7 FALSE FALSE TRUE 1248.782732 992.5245753 1028.196318 987.2047455 817.4830941 1196.63244 971.7798767 950.9151723 1137.112578 1016.616935 1.228370972 0.976301438 1.011390114 0.971068562 0.804121067 1.177073093 0.955895818 0.935372154 1.118526103 1 9.989560453 -7.201623529 22.66190898 1.107841883 0.9774311 0.290667632 0.099795934 105.8819271 40114.22903 0.019231241 0.023553354 6.29E-08 7.201623529 -0.130410783 GDREEEVERPVS(ph)SPGDPEQK ddPTM_HeLa_CUDC101_4h_R1 1 GDREEEVERPVSSPGDPEQK 20 2 O43149 O43149 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 1 0 GDREEEVERPVS(0.5)S(0.5)PGDPEQK 65.265 0.012882 18429000 4419.2 3018 2780.2 3144.5 3580.8 3221.5 3561.5 2897.6 3607.5 3266.7 TRUE FALSE FALSE 3901.188075 3110.981003 2930.506022 3272.746302 3316.651518 3160.055255 3698.868248 3227.451071 3458.797323 3247.269523 1.201374893 0.95802981 0.902452353 1.0078456 1.021366257 0.973142276 1.139070293 0.993896887 1.065140204 1 11.66501142 -7.23310546 24.97240061 1.095093716 1.001203355 0.238625498 0.072904189 911.4086174 803280.6187 0.015478922 0.018955839 5.85E-08 7.23310546 -0.093890362 S(ph)AS(ph)PDDDLGSSNWEAADLGNEERK ddPTM_HeLa_CUDC101_4h_R1 1 SASPDDDLGSSNWEAADLGNEERK 24 1 E9PM92;O00193;E9PQA1 E9PM92 C11orf58;SMAP Small acidic protein 2 0 S(0.824)AS(0.937)PDDDLGS(0.122)S(0.117)NWEAADLGNEERK 106 6.14E-07 4456500 1865.2 1879.6 1714 1776.6 2430.7 1779.6 1794 1595.8 2156.3 1895.2 TRUE FALSE FALSE 1646.564083 1937.508248 1806.664025 1849.057427 2251.392104 1745.657095 1863.195181 1777.459422 2067.416401 1883.927266 0.874006185 1.02844111 0.958988204 0.981490878 1.195052561 0.926605356 0.988995284 0.943486223 1.097397144 1 10.87952755 -7.232871553 24.40911983 0.940502908 1.004627352 0 0.090606093 878.3429031 750480.3154 0.013634811 0.016697189 5.85E-08 7.232871553 0.064124444 SLGVLPFTLNSGS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 2 SLGVLPFTLNSGSPEK 16 0 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 1 0 SLGVLPFTLNS(0.018)GS(0.982)PEK;SLGVLPFT(0.001)LNS(0.025)GS(0.974)PEK ; 238.45 1.70E-43 331750000 17600.2 12295.1 11270 12920.8 14089.7 13772.5 12305.1 9891.1 13111.9 13475.8 TRUE FALSE FALSE 15537.13124 12673.89746 11879.29029 13447.76607 13050.3309 13509.81251 12779.71183 11017.06284 12571.42193 13395.64534 1.159864332 0.946120708 0.886802389 1.003890871 0.974221888 1.008522707 0.95401987 0.82243614 0.938470795 1 13.70947646 -7.232805154 23.54220009 1.075491487 0.946750023 0.165211114 0.076504227 268.7462434 220955.0376 0.012835062 0.015717518 5.85E-08 7.232805154 -0.128741464 SQS(ph)GTLDGESAAWSASGEDSR ddPTM_HeLa_CUDC101_4h_R1 1 SQSGTLDGESAAWSASGEDSR 21 0 P49815;X5D2U8;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4;H3BQK4 P49815 TSC2 Tuberin 1 0 S(0.002)QS(0.911)GT(0.086)LDGESAAWSASGEDSR 354.24 3.30E-221 36846000 3275.9 2220.6 2176.2 2116.8 2505 2436.7 2311 2262.9 2378.6 2425.4 TRUE FALSE FALSE 2891.903968 2289.014054 2293.851955 2203.132254 2320.211141 2390.224007 2400.136044 2520.499389 2280.553101 2410.973613 1.199475578 0.94941481 0.951421427 0.913793598 0.962354432 0.991393682 0.995504899 1.045428028 0.945905459 1 11.23540015 -7.232624309 24.97584106 1.094196809 0.970861555 0.098120843 0.072596844 590.0598012 511442.6314 0.013328722 0.016322692 5.85E-08 7.232624309 -0.123335254 IRVDVADQAQDKDRDDR ddPTM_HeLa_CUDC101_4h_R1 1 IRVDVADQAQDKDRDDR 17 3 E7EX17;P23588-2;P23588;F8VP89;F8W0K0;F8VSC7 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 51.695 0.031379 66595000 2400.7 2741.9 2185.2 2285.5 2604.4 2289.8 2282.1 2926.5 2196.9 2442.2 FALSE FALSE TRUE 2119.293585 2826.374689 2303.338522 2378.712569 2412.278601 2246.12588 2370.121361 3259.640931 2106.342852 2427.673686 0.872973002 1.164231711 0.948784235 0.979832085 0.993658503 0.925217377 0.976293221 1.34270143 0.867638375 1 11.2453588 -4.262169825 5.513174737 0.960996781 1.356363402 0.667296664 0.078831979 0.064948391 7.629004256 0.010846309 0.096454083 5.47E-05 4.262169825 0.395366621 YGEHEAS(ph)PDNGQNEFSDIIK ddPTM_HeLa_CUDC101_4h_R1 1 YGEHEASPDNGQNEFSDIIK 20 0 P46939;Q5SYY2 P46939 UTRN Utrophin 1 0 Y(0.004)GEHEAS(0.996)PDNGQNEFSDIIK 98.957 0.00056351 9913300 3090.5 2528.1 2263.7 2553.2 2767.1 2687.5 2596 2340.8 2462.9 2724.1 TRUE FALSE FALSE 2728.236275 2605.987764 2386.082469 2657.330532 2562.976546 2636.240415 2696.12859 2607.26721 2361.37822 2707.896932 1.007511121 0.962365936 0.881157049 0.98132632 0.946482311 0.973537945 0.995654066 0.962838422 0.87203401 1 11.40295711 -7.232212683 6.69660713 1.00356053 0.95712208 0 0.050600888 0.16215143 26.5154496 0.004838284 0.005868925 5.86E-08 7.232212683 -0.046438451 GSDALSET(ph)SSVSHIEDLEK ddPTM_HeLa_CUDC101_4h_R1 1 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 GSDALS(0.254)ET(0.52)S(0.186)S(0.029)VS(0.01)HIEDLEK 190.46 3.74E-11 7780200 2082.5 1299 830.98 960.36 1909.3 1505 1211.8 764.7 2099.4 1916 TRUE FALSE FALSE 1838.392507 1339.02065 875.9052924 999.5276318 1768.454743 1476.294633 1258.539532 851.750357 2012.861843 1904.603547 0.965236314 0.703044291 0.459888513 0.524795637 0.928515935 0.775119124 0.660788191 0.447206117 1.056840331 1 10.89527501 -7.231941061 4.026742455 0.985001096 0.64463831 0.594550702 0.138360743 0.122953558 4.497221005 0.024260873 0.029176317 5.86E-08 7.231941061 -0.340362786 SPCETISS(ph)PSSTLESK ddPTM_HeLa_CUDC101_4h_R1 1 SPCETISSPSSTLESK 16 0 Q9C0D5 Q9C0D5 TANC1 Protein TANC1 1 0 SPCET(0.012)IS(0.153)S(0.571)PS(0.198)S(0.03)T(0.03)LES(0.007)K 70.134 0.032212 28872000 1563.8 1098.8 952.84 1208.3 1377.3 1382.4 1003.6 906.93 1448.2 1186.5 TRUE FALSE FALSE 1380.493735 1132.652726 1004.353413 1257.579697 1275.699323 1356.033023 1042.309188 1010.171245 1388.504583 1179.442645 1.170462795 0.960328788 0.851549176 1.066249132 1.081612004 1.149723582 0.883730288 0.856481872 1.177254857 1 10.20388955 -7.231752193 24.65802387 1.080496332 0.98391879 0.2413757 0.105879852 913.9233175 759100.6473 0.019290505 0.02362407 5.86E-08 7.231752193 -0.096577542 KAEPSEVDMNS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 6 KAEPSEVDMNSPK 13 1 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 KAEPS(0.084)EVDMNS(0.916)PK;KAEPSEVDMNS(1)PK;KAEPS(0.024)EVDMNS(0.976)PK;KAEPSEVDMNS(1)PK;KAEPSEVDMNS(1)PK;KAEPSEVDMNS(1)PK ;;;;; 105.5 0.0031873 353120300 46660.8 46362.3 47542.8 45699.5 42348.3 39975.3 31132.6 11753.4 42598.6 47433.2 TRUE FALSE FALSE 41191.29176 47790.66751 50113.10758 47563.32314 39224.35028 39212.83776 32333.39481 13091.35955 40842.66768 47151.06522 0.87360257 1.01356496 1.062820264 1.008743343 0.831886832 0.83164267 0.685740495 0.277647164 0.866208801 1 15.52500274 -4.266568164 1.159840083 0.954607992 1.59E-14 0.898294643 0.069546934 0.379753049 0.413762397 0.011334741 0.437557149 5.41E-05 4.266568164 -0.954607992 down LAAQES(ph)SETEDMSVPR ddPTM_HeLa_CUDC101_4h_R1 1 LAAQESSETEDMSVPR 16 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 LAAQES(0.7)S(0.297)ET(0.003)EDMSVPR 193.32 4.04E-16 11962000 1556.1 1588.8 1616.4 1541.4 1517.3 1627.5 1478.9 1589.2 1923.3 1601.1 TRUE FALSE FALSE 1373.696317 1637.749045 1703.787473 1604.264954 1405.371802 1596.458149 1535.941668 1770.108104 1844.02076 1591.576586 0.863104125 1.029010517 1.070502977 1.007972201 0.88300608 1.003067124 0.965044147 1.112172747 1.158612646 1 10.63624087 -7.231588647 24.9322763 0.935354714 1.00545846 0 0.095946151 935.0772373 781006.8437 0.012540777 0.015358002 5.87E-08 7.231588647 0.070103746 AEENTDQAS(ph)PQEDYAGFER ddPTM_HeLa_CUDC101_4h_R1 2 AEENTDQASPQEDYAGFER 19 0 Q9NU22 Q9NU22 MDN1 Midasin 1 0 AEENTDQAS(1)PQEDYAGFER;AEENTDQAS(1)PQEDYAGFER ; 321.67 9.93E-168 64282000 6761.1 3902.3 3993.4 4175.1 5371.7 4883.4 4690.5 4083 3939.2 4295.7 TRUE FALSE FALSE 5968.574107 4022.525238 4209.295283 4345.378624 4975.440393 4790.257281 4871.414156 4547.792216 3776.824509 4270.148985 1.397743762 0.942010513 0.985749045 1.017617568 1.165167869 1.121800972 1.140806603 1.065019565 0.884471367 1 12.06007069 -7.231124696 24.994331 1.187823508 1.067140731 0 0.146331713 1176.921729 970368.5254 0.026690032 0.032686322 5.87E-08 7.231124696 -0.120682777 Y(ph)QLRMS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 YQLRMSK 7 1 Q6P461;Q6P461-3 Q6P461 ACSM6 "Acyl-coenzyme A synthetase ACSM6, mitochondrial" 2 0 Y(1)QLRMS(1)K 80.438 0.0027567 0 1240.6 1669.2 1548.2 1531.3 1770.9 1469 1532.2 1259 1845.3 1642.9 TRUE FALSE FALSE 1095.178749 1720.626074 1631.900375 1593.753033 1640.264235 1440.981273 1591.297467 1402.319471 1769.235953 1633.127958 0.670601923 1.053577012 0.999248324 0.975889872 1.004369699 0.882344378 0.974386275 0.858670911 1.083341905 1 10.67342212 -7.230850278 24.99621279 0.844450862 0.964680681 0 0.118489593 952.4297444 778289.1074 0.021663976 0.026531391 5.88E-08 7.230850278 0.120229819 TEDGGWEWS(ph)DDEFDEESEEGK ddPTM_HeLa_CUDC101_4h_R1 2 TEDGGWEWSDDEFDEESEEGK 21 0 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 TEDGGWEWS(1)DDEFDEESEEGK;TEDGGWEWS(1)DDEFDEESEEGK ; 229.55 4.33E-36 36860900 22038.6 15885 15720.5 15313.8 14251.7 15770.5 13857.1 12708.7 17858.4 22116 TRUE FALSE FALSE 19455.26872 16374.39802 16570.39778 15938.36296 13200.38048 15469.70399 14391.57299 14155.40704 17122.26919 21984.45305 0.884955776 0.744817166 0.753732547 0.724983374 0.600441615 0.703665629 0.654625019 0.643882611 0.77883535 1 14.42419602 -7.230651962 0.581784918 0.986086684 0.643011096 0.580780104 0.072987323 0.116601201 0.088259039 0.011357258 0.013814841 5.88E-08 7.230651962 -0.343075588 EES(ph)EPEVKEDVIEK ddPTM_HeLa_CUDC101_4h_R1 2 EESEPEVKEDVIEK 14 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 EES(1)EPEVKEDVIEK;EES(1)EPEVKEDVIEK ; 86.772 0.010198 17355200 6251 3682.7 4302.2 3995.2 3311.3 4113.2 4107.7 3629.9 4470.3 4126.6 TRUE FALSE FALSE 5518.267256 3796.159622 4534.789945 4158.141525 3067.031996 4034.747563 4266.135365 4043.113143 4286.032342 4102.0548 1.345244646 0.925428793 1.105492288 1.013672837 0.747681868 0.983591824 1.039999603 0.985631188 1.044850094 1 12.00213105 -7.2306391 24.94412881 1.16303222 0.972882052 0.246838021 0.122778755 687.4001978 556703.5224 0.025493749 0.031221504 5.88E-08 7.2306391 -0.190150168 Y(ph)MKDLIS(ph)Y(ph)LEK ddPTM_HeLa_CUDC101_4h_R1 1 YMKDLISYLEK 11 1 Q92619;F5H1R4;K7ES98;K7EM85;Q92619-2 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 3 0 Y(1)MKDLIS(1)Y(1)LEK 56.81 0.0031182 0 163 237.47 386.49 290.02 140.21 180.19 217.68 257.29 291.88 180.16 TRUE FALSE FALSE 143.8933871 244.7861692 407.3848185 301.8482692 129.8669876 176.753176 226.0759905 286.5788536 279.8485829 179.0884003 0.803476869 1.366845473 2.274769431 1.685470799 0.725155775 0.986960494 1.26237093 1.600208909 1.56262819 1 7.484528086 -7.230615595 8.794257482 0.907215498 1.409669855 0.020361699 0.445014922 0.398067125 107.8270373 0.071039191 0.08656787 5.88E-08 7.230615595 0.502454357 KASS(ph)PSPLTIGTPESQR ddPTM_HeLa_CUDC101_4h_R1 3 KASSPSPLTIGTPESQR 17 1 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 1 0 KAS(0.209)S(0.752)PS(0.026)PLT(0.011)IGT(0.001)PESQR;KAS(0.159)S(0.681)PS(0.159)PLT(0.001)IGT(0.001)PESQR;KAS(0.177)S(0.69)PS(0.047)PLT(0.087)IGTPESQR ;; 143.83 0.00036308 67928000 4079.2 4017.67 3944.5 4119.11 4538.7 4013.3 3888.45 3441.96 4228.9 4065.09 TRUE FALSE FALSE 3601.04236 4141.449651 4157.751601 4287.10511 4203.889143 3936.752989 4038.428819 3833.778814 4054.582952 4040.910664 0.891146244 1.024880279 1.028914506 1.060925486 1.040332116 0.974224208 0.99938582 0.948741294 1.003383467 1 11.98046474 -7.230427702 24.6920754 0.94859683 1.012922824 0.167778579 0.042660024 593.0955028 472233.9513 0.008428399 0.010322111 5.88E-08 7.230427702 0.064325993 GDRS(ph)PEPGQTWTR ddPTM_HeLa_CUDC101_4h_R1 4 GDRSPEPGQTWTR 13 1 Q09666;E9PKR9;E9PLK4;E9PJZ0;E9PJC6;Q09666-2 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GDRS(1)PEPGQTWTR;GDRS(1)PEPGQTWTR;GDRS(1)PEPGQTWTR;GDRS(1)PEPGQTWTR ;;; 106.54 0.0070159 184210000 5853.94 5817.25 5663.2 6010.27 6459.94 6272.44 5080.79 4773.69 5559.55 5897.84 TRUE FALSE FALSE 5167.750027 5996.472577 5969.369722 6255.394789 5983.403096 6152.803658 5276.757772 5317.107574 5330.382996 5862.759385 0.881453542 1.022807211 1.018184328 1.066971093 1.020577974 1.049472314 0.900046791 0.906929182 0.909193546 1 12.51736413 -7.230208732 24.79966179 0.944019714 1.000393046 0.203764443 0.059273786 974.5549784 773876.2071 0.011607342 0.014215237 5.89E-08 7.230208732 0.056373332 GQKSPGALET(ph)PSAAGSQGNTASQGK ddPTM_HeLa_CUDC101_4h_R1 1 GQKSPGALETPSAAGSQGNTASQGK 25 1 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5;C9JVY5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 GQKS(0.03)PGALET(0.969)PS(0.001)AAGSQGNTASQGK 128.92 2.22E-10 55762000 2442.1 3078.2 2777.2 2652.3 3359.1 2898.9 2691 3110.2 2609 3041.8 TRUE FALSE FALSE 2155.84074 3173.035693 2927.343833 2760.472258 3111.305885 2843.608312 2794.792771 3464.252596 2501.455916 3023.707238 0.712979323 1.049385884 0.968130709 0.912942967 1.028970611 0.94043771 0.924293442 1.145697094 0.827281122 1 11.56210275 -7.229244649 24.99791501 0.86446242 0.987859641 0.346221409 0.092401047 824.0720723 639859.652 0.020005253 0.024500264 5.90E-08 7.229244649 0.123397221 VAAAAGSGPS(ph)PPGSPGHDR ddPTM_HeLa_CUDC101_4h_R1 2 VAAAAGSGPSPPGSPGHDR 19 0 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 1 0 VAAAAGS(0.004)GPS(0.995)PPGS(0.001)PGHDR;VAAAAGS(0.289)GPS(0.711)PPGSPGHDR ; 72.927 0.0075019 12657900 4850.6 3005.1 2696.09 2871.1 4344.2 3481.1 3153.2 2283.2 3105.8 3321 TRUE FALSE FALSE 4282.020021 3097.683569 2841.848781 2988.195868 4023.737021 3414.703817 3274.81998 2543.110259 2977.777609 3301.246544 1.29709186 0.938337542 0.860841122 0.905171979 1.218853838 1.03436801 0.991994974 0.77034848 0.902016123 1 11.68879517 -7.228434079 24.87966377 1.140293401 0.968114514 0.02987696 0.149780341 708.1524391 533811.5436 0.025984001 0.031822681 5.91E-08 7.228434079 -0.172178887 S(ph)NPSIQATLNK ddPTM_HeLa_CUDC101_4h_R1 2 SNPSIQATLNK 11 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 S(0.996)NPS(0.004)IQATLNK;S(0.987)NPS(0.01)IQAT(0.003)LNK ; 116.19 0.0052159 26532000 2795.3 2125.73 1865.26 1972.85 2119.97 2293.3 2297.2 1782.86 2322.3 2544.7 TRUE FALSE FALSE 2467.639171 2191.221222 1966.101598 2053.31135 1963.584037 2249.559123 2385.803774 1985.813576 2226.573811 2529.564011 0.97551956 0.866244622 0.777249197 0.811725397 0.776253943 0.889307056 0.943167978 0.785041836 0.880220386 1 11.30467303 -7.227981853 3.335159123 0.989545999 0.834084895 0.407686204 0.060542121 0.109661926 2.487877536 0.008899638 0.010695392 5.92E-08 7.227981853 -0.155461105 LSMPQSAAVSTT(ph)PPHNR ddPTM_HeLa_CUDC101_4h_R1 1 LSMPQSAAVSTTPPHNR 17 0 A2A2F0;Q86X10-4;Q86X10-2;Q86X10-3;Q86X10 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 LSMPQSAAVS(0.024)T(0.236)T(0.739)PPHNR 155.08 0.00010454 14554000 3573.8 2618.1 2387.4 2549.1 3066.8 2600.5 2619 2375.5 2754.5 3054.4 TRUE FALSE FALSE 3154.884582 2698.760558 2516.470065 2653.063316 2840.568274 2550.899795 2720.015707 2645.917318 2640.958344 3036.232293 1.039078791 0.888851806 0.828813418 0.873801165 0.935556967 0.840153041 0.895852308 0.871447591 0.869814326 1 11.56806646 -7.22709247 6.827211816 1.018466654 0.875696984 0.267724565 0.055207967 0.058880727 9.042109225 0.004995539 0.006076778 5.93E-08 7.22709247 -0.142769669 TPQASTYSYET(ph)SDLCYTAEKKSPSEAR ddPTM_HeLa_CUDC101_4h_R1 1 TPQASTYSYETSDLCYTAEKKSPSEAR 27 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TPQASTYS(0.001)Y(0.059)ET(0.397)S(0.397)DLCY(0.082)T(0.031)AEKKS(0.024)PS(0.008)EAR 65.197 0.0012937 100040000 1522.2 1511.7 1579.1 1811 2106 1697.1 1678.3 2088.6 1930.8 955.47 TRUE FALSE FALSE 1343.770024 1558.273685 1664.470923 1884.860408 1950.644576 1664.730645 1743.032593 2326.357782 1851.211607 949.7868219 1.414812243 1.64065625 1.752467905 1.984508907 2.053770942 1.752741359 1.835182962 2.449347293 1.949081166 1 9.891459929 -7.226559725 0.332180327 0.927608661 2.202568535 0.164355595 0.336993631 0.352466484 0.117961322 0.138857342 0.164654111 5.94E-08 7.226559725 1.274959874 MEIDESNAGSS(ph)KEEAGETSPADESGAPK ddPTM_HeLa_CUDC101_4h_R1 1 MEIDESNAGSSKEEAGETSPADESGAPK 28 1 Q9UKY1 Q9UKY1 ZHX1 Zinc fingers and homeoboxes protein 1 1 0 MEIDES(0.005)NAGS(0.005)S(0.556)KEEAGET(0.211)S(0.211)PADES(0.012)GAPK 69.435 0.00022258 0 584.42 628.94 698.93 553.78 653.34 825.98 545.1 511.93 516.13 625.59 TRUE FALSE FALSE 515.9151735 648.3168959 736.7162699 576.365542 605.1444098 810.2258077 566.1246896 570.2060419 494.8549029 621.8689629 0.829620393 1.042529752 1.18468088 0.92682796 0.973105985 1.302888319 0.910360097 0.91692314 0.795754303 1 9.280466805 -7.225726891 22.48813221 0.919542967 1.041146678 0.22385875 0.130088675 246.8908587 155466.6021 0.021647334 0.026511339 5.95E-08 7.225726891 0.12160371 NKELYEINPPEISEEIIGS(ph)PIPEPR ddPTM_HeLa_CUDC101_4h_R1 1 NKELYEINPPEISEEIIGSPIPEPR 25 1 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 NKELYEINPPEIS(0.145)EEIIGS(0.855)PIPEPR 104.84 5.86E-07 12670000 1695.4 1190.1 1060.3 1296.2 1612.5 1096.3 1200.7 1174.5 1562.9 1273.5 TRUE FALSE FALSE 1496.667782 1226.76557 1117.623025 1349.064639 1493.549088 1075.389904 1247.011401 1308.200333 1498.4766 1265.925165 1.182271925 0.969066422 0.882850784 1.065674872 1.179808356 0.849489317 0.985059335 1.033394681 1.183700776 1 10.30597641 -7.225440483 24.77093066 1.086072883 0.994573608 0.228224788 0.100668253 807.4997529 555643.1601 0.018043407 0.022098031 5.95E-08 7.225440483 -0.091499275 ISALQGK(ac)LSK ddPTM_HeLa_CUDC101_4h_R1 1 ISALQGKLSK 10 1 Q14966-3;Q14966;Q14966-5 Q14966-3 ZNF638 Zinc finger protein 638 0 1 ISALQGK(1)LSK 126.71 0.0023493 569760 466.45 392.56 162.01 371.06 347.31 423.19 304 308.58 397.6 0 FALSE TRUE FALSE 411.7734381 404.6543083 170.7687507 386.1934307 321.6896332 415.1183558 315.7253818 343.7074999 381.2107597 0 0 MS(ph)RKS(ph)GIGHEASLK ddPTM_HeLa_CUDC101_4h_R1 1 MSRKSGIGHEASLK 14 2 Q8N954-2 Q8N954-2 GPATCH11 G patch domain-containing protein 11 2 0 MS(1)RKS(1)GIGHEASLK 56.956 0.03599 10483000 7316.6 5575.8 5279.3 4926.9 6657.6 6083.4 5352.5 5576.2 5440.2 5936.4 TRUE FALSE FALSE 6458.959239 5747.583789 5564.714927 5127.840278 6166.482112 5967.369281 5558.947718 6210.972068 5215.952653 5901.090029 1.094536638 0.973986799 0.942997802 0.868964929 1.0449734 1.011231696 0.94202049 1.052512678 0.883896471 1 12.52676575 -7.225232363 21.12262052 1.04464229 0.97385574 0 0.074787027 101.78359 59378.50311 0.010019067 0.012270077 5.95E-08 7.225232363 -0.07078655 ISDEDWDIIHR ddPTM_HeLa_CUDC101_4h_R1 2 ISDEDWDIIHR 11 0 A0A2R8YD50;P51659-3;P51659;P51659-2;E7ER27;A0A2R8YDT8;A0A2R8YF45 A0A2R8YD50 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 0 ; ; 148.28 0.00075806 106077000 17822.2 15165.2 14950.8 14798.2 17142.9 15699 14961 14330.1 15417.7 16326.1 FALSE FALSE TRUE 15733.10873 15632.42184 15759.08547 15401.73456 15878.30242 15399.56773 15538.05078 15961.38066 14782.17588 16228.99163 0.969444627 0.963240489 0.971045265 0.949025972 0.978391189 0.948892456 0.957425522 0.983510314 0.910849929 1 13.98628574 -8.883232492 0.538495787 1.003532624 0.962929699 0 0.029821811 0.521049892 0.259530348 0.010405575 0.002658733 1.31E-09 8.883232492 -0.040602925 ISDVIEDSVVEDYNSVDK ddPTM_HeLa_CUDC101_4h_R1 1 ISDVIEDSVVEDYNSVDK 18 0 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3;A6PW30;E9PJY9;E9PIR8;Q7Z3K3-4 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 0 0 168.93 1.88E-06 3983700 1797.4 1197.1 1590.7 1252.8 1630.3 1633.9 1317.9 1391.2 1548.1 1638.2 FALSE FALSE TRUE 1586.711497 1233.981232 1676.698054 1303.894599 1510.036017 1602.73608 1368.731844 1549.568585 1484.286663 1628.455914 0.974365645 0.757761522 1.029624468 0.800693828 0.92728087 0.984205999 0.840508996 0.951556976 0.911468742 1 10.66928895 -7.493644785 24.54182523 0.988690798 0.89961926 0.087506708 0.081862072 283.9813473 238404.337 0.012222596 0.013290141 3.21E-08 7.493644785 -0.089071538 DANGNS(ph)FATR ddPTM_HeLa_CUDC101_4h_R1 1 DANGNSFATR 10 0 C9JEH7;Q8TD47;P62701;P22090 C9JEH7 RPS4Y1;RPS4Y2;RPS4X "40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1" 1 0 DANGNS(1)FATR 82.774 0.039384 4710800 941.13 978.94 1028.5 1106 752.56 1013 1109.7 754.78 856.09 986.85 TRUE FALSE FALSE 830.8121681 1009.099981 1084.103821 1151.107461 697.0451481 993.6787128 1152.501501 840.7011043 820.8016079 980.9801723 0.846920449 1.028665012 1.105123071 1.173425817 0.710559874 1.012944747 1.174846886 0.857001118 0.836715798 1 9.938080167 -7.224864926 24.02190029 0.92771241 1.014023092 0.108805332 0.140202472 758.1463067 497946.4154 0.023259235 0.028486048 5.96E-08 7.224864926 0.086310681 EVRS(ph)PTKAPHLQLIEGK ddPTM_HeLa_CUDC101_4h_R1 1 EVRSPTKAPHLQLIEGK 17 2 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;E9PII3;A0A2R8Y5B3;H0Y5B0 O43491 EPB41L2 Band 4.1-like protein 2 1 0 EVRS(0.852)PT(0.148)KAPHLQLIEGK 48.547 0.037215 46299000 2032.2 2353.8 2319.4 2034.5 2990.6 2363.7 2027.4 2006 2700.1 2352.7 TRUE FALSE FALSE 1793.988597 2426.317788 2444.79378 2117.475704 2769.989396 2318.616361 2105.597497 2234.354931 2588.800735 2338.706036 0.767085974 1.037461635 1.045361727 0.905404814 1.184411103 0.991409919 0.900325849 0.955380838 1.10693721 1 11.19149482 -7.224778013 24.98349771 0.890012784 1.003314663 0 0.115163673 736.8742755 502155.9812 0.018779508 0.022999698 5.96E-08 7.224778013 0.11330188 QSHAASAAPQAS(ph)SPPDYTMAWAEYYR ddPTM_HeLa_CUDC101_4h_R1 1 QSHAASAAPQASSPPDYTMAWAEYYR 26 0 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 1 0 QSHAASAAPQAS(0.841)S(0.159)PPDYTMAWAEYYR 166.46 3.91E-12 21002000 2458.5 1638.5 1337.3 1362.2 2538.4 1648.3 1835.1 1597.2 2239 1768.6 TRUE FALSE FALSE 2170.318357 1688.980243 1409.598483 1417.756404 2351.147289 1616.861424 1905.880422 1779.018792 2146.707472 1758.080289 1.234481935 0.960695739 0.80178277 0.806423013 1.337337836 0.919674394 1.084069046 1.011909868 1.221052011 1 10.77978524 -7.2240783 24.54518122 1.110727621 0.989037104 0.171735091 0.156410158 798.0678391 524308.6389 0.027504872 0.033685831 5.97E-08 7.2240783 -0.121690517 TPMYGSQT(ph)PLQDGSR ddPTM_HeLa_CUDC101_4h_R1 2 TPMYGSQTPLQDGSR 15 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 0 T(0.006)PMYGS(0.003)QT(0.991)PLQDGSR;TPMYGS(0.014)QT(0.978)PLQDGS(0.008)R ; 132.65 0.0029858 43930000 2659.4 2032.15 1879.77 1939.73 2267.1 2276.9 1715.58 1788.93 1968.72 2420.4 TRUE FALSE FALSE 2347.669163 2094.758133 1981.396052 2018.840574 2099.86055 2233.471926 1781.750495 1992.57456 1887.568528 2406.003353 0.975754735 0.870638077 0.823521733 0.839084688 0.872758779 0.928291277 0.740543646 0.828167823 0.78452448 1 11.23242294 -7.223915357 2.775611573 0.990115854 0.839834474 0 0.078499426 0.108723721 1.631179129 0.007795169 0.009371267 5.97E-08 7.223915357 -0.15028138 ISEQSDAK(ac)LK ddPTM_HeLa_CUDC101_4h_R1 2 ISEQSDAKLK 10 1 P25705;P25705-2;P25705-3 P25705 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 1 ; ISEQSDAK(1)LK;ISEQSDAK(1)LK 158.47 1.32E-13 3501000 5962.7 5210.3 3966.1 4897 5051.2 4794 4720.1 4450.1 3722.9 4875.4 FALSE TRUE FALSE 5263.761345 5370.823167 4180.519363 5096.720827 4678.583039 4702.562437 4902.155838 4956.681396 3569.440486 4846.400904 1.086117605 1.108208601 0.862602877 1.051650684 0.965372682 0.97032056 1.0115044 1.022755132 0.736513664 1 12.24269804 T(ph)LDSDEERPR ddPTM_HeLa_CUDC101_4h_R1 1 TLDSDEERPR 10 1 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 T(0.798)LDS(0.202)DEERPR 92.247 0.029364 35151000 3677.4 2731.6 2711 2478.6 2800 2594 2628.6 2388.1 2920.8 3504 TRUE FALSE FALSE 3246.340747 2815.757358 2857.56486 2579.688021 2593.449578 2544.523772 2729.985983 2659.951651 2800.403388 3483.158052 0.932010749 0.808392073 0.820394831 0.740617561 0.744568446 0.730522053 0.783767472 0.763660911 0.803984013 1 11.76618022 -7.223465815 0.960931634 0.982044358 0.75119037 0.466479743 0.060806672 0.076385244 0.139512002 0.005506237 0.006681889 5.98E-08 7.223465815 -0.230853989 SHHAPMS(ph)PGSSGGGGQPLAR ddPTM_HeLa_CUDC101_4h_R1 4 SHHAPMSPGSSGGGGQPLAR 20 0 O14497-2;O14497 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 SHHAPMS(0.946)PGS(0.044)S(0.01)GGGGQPLAR;S(0.001)HHAPMS(0.992)PGS(0.005)S(0.002)GGGGQPLAR;S(0.024)HHAPMS(0.974)PGS(0.002)SGGGGQPLAR;S(0.002)HHAPMS(0.998)PGS(0.001)SGGGGQPLAR ;;; 114.39 0.00044803 23616300 6530.67 4104.51 4153.71 3897.16 5996.49 4917.27 4421.13 2939.12 5393.88 4441.62 TRUE FALSE FALSE 5765.154762 4230.965088 4378.272127 4056.10303 5554.140879 4823.481267 4591.654465 3273.69754 5171.541983 4415.201047 1.305751358 0.958272351 0.99163596 0.918667799 1.25795877 1.09247149 1.039964979 0.741460583 1.17130385 1 12.10826342 -7.22187097 24.97248245 1.144382672 1.011615182 0.204311008 0.141599777 834.0415321 526382.4831 0.027412852 0.033573447 6.00E-08 7.22187097 -0.13276749 TSS(ph)KESS(ph)PIPSPTSDRK ddPTM_HeLa_CUDC101_4h_R1 1 TSSKESSPIPSPTSDRK 17 2 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 T(0.103)S(0.095)S(0.799)KES(0.212)S(0.789)PIPS(0.002)PTSDRK 96.55 0.025444 162020000 2717.6 3349.3 2889.9 3275.9 3453.4 3178.8 2778.7 3436.1 3263.4 3354.2 TRUE FALSE FALSE 2399.047048 3452.487963 3046.136735 3409.505362 3198.649562 3118.169686 2885.87539 3827.251735 3128.881271 3334.249069 0.719516448 1.035461926 0.913590038 1.022570687 0.95933132 0.935193989 0.865524839 1.147860179 0.938406581 1 11.70314616 -7.221858786 24.98589579 0.867549339 0.974415756 0.156537784 0.098959127 766.1409456 483639.6013 0.020167309 0.024699586 6.00E-08 7.221858786 0.106866418 ISGLIYEETR ddPTM_HeLa_CUDC101_4h_R1 2 ISGLIYEETR 10 0 P62805 P62805 HIST1H4A Histone H4 0 0 ; ; 142 0.0059108 67623000 6427.7 5299.3 2171.36 4929.4 3659.2 4529.5 4546.3 3223.1 1827.02 2388.4 FALSE FALSE TRUE 5674.25475 5462.565152 2288.75029 5130.442239 3389.268106 4443.107334 4721.652314 3590.004676 1751.709462 2374.193691 2.389971287 2.300808554 0.964011613 2.160919835 1.427544905 1.871417379 1.988739307 1.51209427 0.737812365 1 11.21322192 -9.5673354 1.367832285 1.003665304 1.893242377 0.429647387 0.426375804 0.365173505 1.23264906 0.295085613 0.070529367 2.71E-10 9.5673354 0.889577073 RQAPGVGAVGGGS(ph)PEREEVGAGYNS(ph)EDEYEAAAAR ddPTM_HeLa_CUDC101_4h_R1 1 RQAPGVGAVGGGSPEREEVGAGYNSEDEYEAAAAR 35 2 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 2 0 RQAPGVGAVGGGS(0.706)PEREEVGAGY(0.514)NS(0.775)EDEY(0.005)EAAAAR 63.157 0.00017097 11171000 139.43 332.08 328.63 292.77 341.28 266.16 334.74 479.62 359.56 303.46 TRUE FALSE FALSE 123.0862268 342.3109912 346.3967319 304.7104261 316.1044543 261.0834415 347.6510339 534.2180021 344.7387846 301.6550064 0.408036413 1.13477643 1.148320845 1.010128854 1.047900574 0.865503426 1.152478913 1.770956857 1.142824675 1 8.236755716 -7.220152467 20.76940044 0.720461815 1.139021211 0.148823945 0.292146901 66.37289847 33388.51716 0.050993564 0.062452477 6.02E-08 7.220152467 0.418559395 ISICSSDK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 ISICSSDKR 9 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 0 1 ISICSSDK(1)R 105.1 0.0067674 4742300 3205.3 2084.7 1480.4 3030.1 3095.6 3564.9 4002.8 3534.6 961.13 640.05 FALSE TRUE FALSE 2829.579593 2148.927136 1560.434902 3153.680575 2867.243755 3496.905472 4157.189337 3936.964577 921.5118146 636.2429541 4.447325624 3.377526025 2.452577104 4.956723772 4.506523391 5.496179485 6.533965225 6.187832103 1.448364667 1 9.313433964 -5.775256118 0.144408001 7.36E-17 9.713984217 0.825647863 0.759610347 5.100031952 0.244349216 4.584173507 11.99160096 1.68E-06 5.775256118 9.713984217 SISAS(ph)KASPPGDLQNPK ddPTM_HeLa_CUDC101_4h_R1 1 SISASKASPPGDLQNPK 17 1 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 S(0.001)IS(0.059)AS(0.75)KAS(0.19)PPGDLQNPK 81.574 0.0063313 246270000 2306 2715 2471.2 2332.1 3047.9 2527.3 2496.7 2463.1 2936.3 2737.7 TRUE FALSE FALSE 2035.694176 2798.645932 2604.800547 2427.213118 2823.062489 2479.095963 2592.998555 2743.489348 2815.264471 2721.416039 0.748027551 1.028378569 0.957148966 0.891893442 1.037350574 0.910958092 0.952812256 1.008110965 1.034485147 1 11.41014181 -7.220126956 24.99962011 0.881012894 0.965773909 0 0.086566321 758.8752063 459223.0074 0.016641953 0.020382056 6.02E-08 7.220126956 0.084761014 GVQVET(ph)ISPGDGMLEDGK ddPTM_HeLa_CUDC101_4h_R1 1 GVQVETISPGDGMLEDGK 18 0 Q1JUQ5 Q1JUQ5 FKBP12-Exip2 Peptidyl-prolyl cis-trans isomerase 1 0 GVQVET(1)ISPGDGMLEDGK 86.497 0.0092736 2765200 1518.6 991.6 976.39 891.25 1100.9 1132.7 993.55 893.19 1179.9 1085.6 TRUE FALSE FALSE 1340.59201 1022.150021 1029.176597 927.5990273 1019.6888 1111.095635 1031.871556 994.8671392 1131.264023 1079.142803 1.242274893 0.947186988 0.953698245 0.85957023 0.94490627 1.029609456 0.95619556 0.921904994 1.048298723 1 10.07567007 -7.220100689 21.2688362 1.114407536 0.94550724 0.49310045 0.070006756 65.08576293 33486.46409 0.016063415 0.019673167 6.02E-08 7.220100689 -0.168900295 ISLGK(ac)VGVK ddPTM_HeLa_CUDC101_4h_R1 2 ISLGKVGVK 9 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 0 1 ; ISLGK(1)VGVK;ISLGK(1)VGVK 123.86 0.0015722 1411900 1150.77 1030.8 1073.42 1339.94 1137.68 1421.69 1250.04 1331.62 591.48 936.41 FALSE TRUE FALSE 1015.878485 1062.557726 1131.452332 1394.588545 1053.755613 1394.573632 1298.254462 1483.206238 567.098944 930.8401917 1.091356491 1.141503918 1.215517274 1.49820405 1.132047823 1.498188029 1.394712511 1.593405884 0.60923341 1 9.862389694 -5.233100663 0.285206627 0.977522976 1.783004277 0.659641708 0.162577607 1.644433717 0.158553225 0.05983222 0.444117075 5.85E-06 5.233100663 0.805481301 VPSPLEGSEGDGDT(ph)D ddPTM_HeLa_CUDC101_4h_R1 2 VPSPLEGSEGDGDTD 15 0 F5H168;Q9Y606-2;Q9Y606;F5H1S9 F5H168 PUS1 "tRNA pseudouridine synthase A, mitochondrial;tRNA pseudouridine synthase" 1 0 VPSPLEGSEGDGDT(1)D;VPSPLEGSEGDGDT(1)D ; 162.31 0.00023209 11816900 2410.5 1873.38 1668.86 2009.57 2232.61 2079.42 1792.55 1875.12 2137.49 1962.76 TRUE FALSE FALSE 2127.944844 1931.096617 1759.08362 2091.528951 2067.914808 2039.758528 1861.689254 2088.576081 2049.381757 1951.085416 1.090646686 0.989755036 0.901592316 1.071982258 1.059879179 1.045448093 0.954181318 1.070468809 1.050380337 1 10.93006122 -7.220067336 24.98641512 1.042805424 1.012038627 0.070328516 0.055347199 1253.848766 757256.7308 0.010082667 0.012348628 6.02E-08 7.220067336 -0.030766797 YQPLASTASDNDFVT(ph)PEPR ddPTM_HeLa_CUDC101_4h_R1 1 YQPLASTASDNDFVTPEPR 19 0 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 0 YQPLAS(0.001)T(0.016)AS(0.026)DNDFVT(0.958)PEPR 181.32 1.58E-10 35918000 1921.5 1432 1521.7 1661.8 1764.9 1859.1 1460.9 391.95 1626.6 1550.6 TRUE FALSE FALSE 1696.264683 1476.118223 1603.967705 1729.575387 1634.706843 1823.640765 1517.247402 436.5680037 1559.55086 1541.376962 1.100486594 0.957662051 1.040607031 1.122097598 1.060549679 1.183124446 0.984345452 0.28323247 1.01179069 1 10.59000402 -4.266510519 4.308499914 1.055908714 0.228828135 0.934047706 0.061486367 0.036106207 1.567643204 0.008795616 0.090563107 5.41E-05 4.266510519 -0.827080579 down SFS(ph)EDVISHK ddPTM_HeLa_CUDC101_4h_R1 2 SFSEDVISHK 10 0 A0A494C1D7;H0YC82;Q03001-10;F6QMI7;E9PHM6;Q03001-8;Q03001-14;F8W9J4;Q03001 A0A494C1D7;F6QMI7;F8W9J4 DST Dystonin 1 0 S(0.014)FS(0.986)EDVISHK;S(0.374)FS(0.626)EDVISHK ; 135.1 0.00024411 38779000 13958.5 10074.4 9984.1 9615.9 10782.1 10542.6 10290.5 7986 11898.1 12322 TRUE FALSE FALSE 12322.30579 10384.78032 10523.87065 10008.07797 9986.725964 10341.51747 10687.40803 8895.093959 11407.65528 12248.7082 1.0060086 0.847826575 0.859182085 0.817072119 0.815328915 0.844294541 0.872533484 0.7262067 0.931335378 1 13.58034198 -7.219962335 3.973297734 1.00336392 0.827122846 0.713462704 0.043770992 0.059078175 2.015126649 0.005912878 0.00714829 6.03E-08 7.219962335 -0.176241074 ISMPDFDLHLK ddPTM_HeLa_CUDC101_4h_R1 2 ISMPDFDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 100.93 0.011939 25323000 12776.4 11733 9413.6 9890.3 11778.8 10968.8 10372.3 10220.4 10405.1 11222.9 FALSE FALSE TRUE 11278.76976 12094.47982 9922.527691 10293.66918 10909.90139 10759.58842 10772.36309 11383.84902 9976.197374 11156.14569 1.010991616 1.084109168 0.889422563 0.922690459 0.977927475 0.964453917 0.965598997 1.020410574 0.894233336 1 13.44555106 -6.758001072 24.99943816 1.011254412 0.956917412 0.09735245 0.054277535 84.39996088 613654.7586 0.00632611 0.008743558 1.75E-07 6.758001072 -0.054337 GAPSITSVT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 GAPSITSVTPR 11 0 H7C3L4;E7EQA9;Q92844 H7C3L4 TANK TRAF family member-associated NF-kappa-B activator 1 0 GAPSITSVT(1)PR;GAPSITSVT(1)PR ; 168.83 4.85E-06 28266000 4268.4 3978.8 3554.2 3690 4538.1 4226.6 3545.3 1661.34 3990.1 3932.5 TRUE FALSE FALSE 3768.064622 4101.382112 3746.350803 3840.49415 4203.333404 4145.984647 3682.043409 1850.46023 3825.626389 3909.109315 0.963918969 1.049185833 0.958364298 0.982447366 1.075266273 1.06059573 0.941913646 0.473371318 0.978644003 1 11.93262421 -4.266226853 4.006876203 0.996530501 0.428859038 0.93973775 0.040308068 0.040228673 1.345709604 0.0058905 0.065629412 5.42E-05 4.266226853 -0.567671463 down TQT(ph)PPVSPAPQPTEER ddPTM_HeLa_CUDC101_4h_R1 2 TQTPPVSPAPQPTEER 16 0 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 1 0 T(0.062)QT(0.938)PPVSPAPQPTEER;T(0.083)QT(0.912)PPVS(0.005)PAPQPT(0.001)EER ; 205.12 1.07E-16 505730000 3670.6 2696.2 2796.8 2310.89 2537.43 2638.1 2199.09 2076.97 2597.8 3797.8 TRUE FALSE FALSE 3240.337832 2779.266726 2948.003468 2405.138083 2350.248844 2587.782638 2283.909638 2313.403869 2490.717584 3775.210517 0.858319773 0.736188542 0.780884524 0.637087143 0.622547758 0.685467109 0.604975439 0.612788044 0.659755946 1 11.88234138 -7.219956722 0.449113691 0.996545561 0.596393786 0.207524319 0.108086196 0.139138726 0.070523665 0.015977302 0.019477221 6.03E-08 7.219956722 -0.400151775 ISMPDVDLHLK ddPTM_HeLa_CUDC101_4h_R1 2 ISMPDVDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 169.82 8.52E-07 32133000 12295.5 10309.9 9960 9538.2 10468.1 10249.8 10351.9 10183.9 10507.5 11836.2 FALSE FALSE TRUE 10854.24013 10627.5358 10498.46773 9927.209024 9695.889118 10054.30214 10751.17625 11343.19401 10074.3764 11765.79776 0.922524792 0.903256712 0.892286944 0.843734461 0.824074093 0.854536373 0.913765175 0.964082015 0.856242527 1 13.52231152 -8.16531456 0.640624472 0.994123678 0.878575376 0 0.056780191 0.376890989 0.343859327 0.018839767 0.011003786 6.83E-09 8.16531456 -0.115548301 ISMPDVDLHLK(ac)GPK ddPTM_HeLa_CUDC101_4h_R1 1 ISMPDVDLHLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 1 ISMPDVDLHLK(1)GPK 67.997 0.031473 604950 162.67 0 0 112.7 190.54 157.88 240.21 134.93 0 0 FALSE TRUE FALSE 143.6020692 0 0 117.2963931 176.4842438 154.868702 249.4749802 150.2898858 0 0 0 GGCPGGEATLS(ph)QPPPR ddPTM_HeLa_CUDC101_4h_R1 2 GGCPGGEATLSQPPPR 16 0 P20290 P20290 BTF3 Transcription factor BTF3 1 0 GGCPGGEATLS(1)QPPPR;GGCPGGEAT(0.001)LS(0.999)QPPPR ; 185.86 8.04E-11 15424300 1394.93 1624.92 1692.73 1668.46 1944.16 1624.34 1403.57 1166.23 1440.91 1631.05 TRUE FALSE FALSE 1231.41842 1674.981859 1784.244104 1736.50701 1800.74319 1593.358421 1457.706165 1298.988909 1381.51508 1621.348442 0.759502639 1.033079513 1.10046925 1.071026416 1.110645401 0.982736579 0.89907026 0.801178128 0.852077841 1 10.66297846 -7.219544236 24.98439539 0.886431748 1.006098652 0.23794354 0.104384701 673.8416785 401849.5986 0.021456997 0.026279241 6.03E-08 7.219544236 0.119666904 ALS(ph)SAGPIPIRPPIVPVK ddPTM_HeLa_CUDC101_4h_R1 1 ALSSAGPIPIRPPIVPVK 18 1 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 ALS(0.5)S(0.5)AGPIPIRPPIVPVK 88.471 0.0032747 66425000 3085.8 2427.3 2325.4 2332.8 2539.9 2585.6 1841.5 2428.8 2344.9 2901.3 TRUE FALSE FALSE 2724.087202 2502.082236 2451.118158 2427.941667 2352.536637 2536.283988 1912.527272 2705.284774 2248.242229 2884.042939 0.944537672 0.867560674 0.84988962 0.841853509 0.81570791 0.879419635 0.663141053 0.938018203 0.779545339 1 11.49387693 -7.218550028 0.710579417 0.989865317 0.812279019 0 0.093454805 0.3084944 0.326447468 0.015799692 0.019363914 6.05E-08 7.218550028 -0.177586298 VDVEVPDVS(ph)LEGPEGK ddPTM_HeLa_CUDC101_4h_R1 2 VDVEVPDVSLEGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VDVEVPDVS(1)LEGPEGK;VDVEVPDVS(1)LEGPEGK ; 185.63 8.29E-11 32669000 9952.9 7184.6 5774.5 5816.5 6330.5 6614.9 7145.6 10552.4 7769.7 8863.8 TRUE FALSE FALSE 8786.23615 7405.94901 6086.686937 6053.722011 5863.511627 6488.731804 7421.208186 11753.64256 7449.429677 8811.077723 0.997180643 0.840527032 0.69079937 0.687058065 0.665470424 0.736428846 0.842258849 1.333961966 0.845461805 1 13.10510278 -7.218269788 4.403709327 0.999103395 0.806323636 0.05207726 0.188654965 0.268088939 11.74290912 0.030739005 0.037257885 6.05E-08 7.218269788 -0.192779759 EAGELPTS(ph)PLHLLSPGTPR ddPTM_HeLa_CUDC101_4h_R1 2 EAGELPTSPLHLLSPGTPR 19 0 Q969R5;H7C228;Q969R5-2;Q969R5-3 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 0 EAGELPT(0.018)S(0.982)PLHLLSPGTPR;EAGELPT(0.219)S(0.781)PLHLLSPGTPR ; 120.66 3.64E-05 7482400 4945.7 3009.59 2507.6 2605.63 3292.2 3292.5 3010.5 3020.8 3983.8 3829.5 TRUE FALSE FALSE 4365.972543 3102.311901 2643.168441 2711.898854 3049.340965 3229.701048 3126.615993 3364.675662 3819.586078 3806.721964 1.146911328 0.814956262 0.694342394 0.712397406 0.801041157 0.848420525 0.821340782 0.883877439 1.003379315 1 11.89433349 -7.217674245 7.996920962 1.069325903 0.79211105 0.752028485 0.066400566 0.114765841 19.29181364 0.013060224 0.015961381 6.06E-08 7.217674245 -0.277214852 LSYLSAPGSEYSMYSTDS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 LSYLSAPGSEYSMYSTDSR 19 0 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 LSYLSAPGS(0.001)EYS(0.006)MY(0.001)S(0.019)T(0.38)DS(0.592)R 122.5 0.00010678 6718000 2079.1 1334.9 1262.3 1356.7 1522 1437.1 1275.5 1187.8 1404.2 1482.2 TRUE FALSE FALSE 1835.39105 1376.026687 1330.543756 1412.03209 1409.725092 1409.689712 1324.696462 1323.014351 1346.318282 1473.383808 1.245697855 0.933922769 0.90305306 0.958359989 0.956794207 0.956770194 0.899084444 0.897942778 0.913759384 1 10.52491758 -7.216678096 17.51461922 1.116023547 0.930453161 0.210338426 0.08726777 9.643896067 3773.211612 0.015303651 0.018742254 6.07E-08 7.216678096 -0.185570386 ETS(ph)RSRGGGGAVS(ph)ER ddPTM_HeLa_CUDC101_4h_R1 5 ETSRSRGGGGAVSER 15 2 Q8N7J2-2;Q8N7J2 Q8N7J2-2 AMER2 APC membrane recruitment protein 2 2 0 ETS(0.998)RS(0.002)RGGGGAVS(0.999)ER;ETS(1)RSRGGGGAVS(1)ER;ET(0.001)S(0.999)RS(0.018)RGGGGAVS(0.982)ER;ETS(0.998)RS(0.011)RGGGGAVS(0.991)ER;ETS(1)RSRGGGGAVS(1)ER ;;;; 121.02 0.0025421 1787300000 5707 11556.9 8329.49 12230.8 16847.6 16571.1 14408.5 7994 13431.8 1338.08 TRUE FALSE FALSE 5038.034111 11912.95439 8779.807425 12729.62489 15604.78611 16255.03388 14964.24067 8904.004647 12878.13552 1330.121041 3.787650866 8.95629347 6.600758244 9.570275562 11.7318542 12.2207178 11.25028491 6.694131117 9.681927528 1 10.37734182 -7.214854699 0.755848601 1.570692103 10.65730201 0.189970186 3.100796406 0.16868819 0.198872712 0.446795171 0.548166976 6.10E-08 7.214854699 9.086609909 ISRPGDSDDSR ddPTM_HeLa_CUDC101_4h_R1 2 ISRPGDSDDSR 11 1 P14866;M0QXS5;A0A3B3ITJ4;P14866-2;B4DVF8;M0QYL7;M0R1W6 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 0 ; ; 91.469 0.028441 174437000 8439.4 7678.3 7923 8165.7 8070.9 7408.5 8018.7 6886 8512.2 8204.5 FALSE FALSE TRUE 7450.146325 7914.859322 8351.341346 8498.732541 7475.525786 7267.195206 8327.983945 7669.874406 8161.323513 8155.699269 0.913489583 0.970469737 1.023988388 1.042060559 0.916601451 0.89105728 1.021124452 0.940431244 1.000689609 1 12.99359286 -9.792103175 1.794457507 1.000084576 0.957238472 0.059568626 0.04913786 0.790327027 4.607291614 0.038882112 0.008163848 1.61E-10 9.792103175 -0.042846104 FLMECRNS(ph)PVTK ddPTM_HeLa_CUDC101_4h_R1 1 FLMECRNSPVTK 12 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 FLMECRNS(0.999)PVT(0.001)K 70.26 0.031197 506860000 3314.1 3823.8 3113.9 3640.4 4953.2 3642.1 3892 3699.2 3751.8 2545.4 TRUE FALSE FALSE 2925.626222 3941.606746 3282.246853 3788.871247 4587.812304 3572.633011 4042.115744 4120.301975 3597.149216 2530.259848 1.156255246 1.557787335 1.297197541 1.497423773 1.813178322 1.411962891 1.597510132 1.628410607 1.421652096 1 11.30506984 -7.213160094 0.716353189 1.025709881 1.601877887 0.37443107 0.179025042 0.197629309 0.211994362 0.032810902 0.040352259 6.12E-08 7.213160094 0.576168006 LVDVS(ph)PDR ddPTM_HeLa_CUDC101_4h_R1 1 LVDVSPDR 8 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 LVDVS(1)PDR 86.344 0.034155 10439000 2311.3 1559.4 1551.1 1728.6 1517.5 1431 1562.9 1366.7 2014.3 1900.7 TRUE FALSE FALSE 2040.372918 1607.443266 1634.957158 1799.09978 1405.557048 1403.706059 1623.181577 1522.279604 1931.269701 1889.394552 1.079908331 0.850771621 0.865333901 0.952209679 0.743919287 0.742939614 0.859101438 0.805697043 1.022163264 1 10.88370829 -7.211473341 6.260556232 1.037698049 0.830807799 0.703276046 0.060321625 0.092269533 8.784934051 0.011005412 0.013441678 6.15E-08 7.211473341 -0.20689025 S(ph)S(ph)PMTVKSDDGLS(ph)TASSPEPGT(ph)SDLVGSASSALK ddPTM_HeLa_CUDC101_4h_R1 1 SSPMTVKSDDGLSTASSPEPGTSDLVGSASSALK 34 1 A0A2U3TZJ5;Q9H165-2;Q9H165-6;Q9H165 A0A2U3TZJ5 BCL11A B-cell lymphoma/leukemia 11A 4 0 S(0.879)S(0.879)PMT(0.124)VKS(0.124)DDGLS(0.249)T(0.249)AS(0.249)S(0.249)PEPGT(0.628)S(0.109)DLVGS(0.035)AS(0.113)S(0.113)ALK 42.59 0.013765 16746000 2797.1 1473.4 1477.5 1797.4 1644.2 1717.9 1446.9 1461.9 2319.8 1617.9 TRUE FALSE FALSE 2469.228178 1518.793708 1557.378119 1870.705741 1522.910642 1685.13392 1502.707418 1628.316787 2224.176862 1608.276659 1.535325508 0.944360971 0.968352124 1.163174091 0.946920813 1.047788582 0.934358781 1.012460622 1.382956626 1 10.65129989 -7.21103445 24.9877037 1.252792927 1.00434004 0.479380369 0.141753523 377.2674553 187026.4771 0.033761739 0.041349486 6.15E-08 7.21103445 -0.248452886 S(ph)RS(ph)PS(ph)SPELNNK ddPTM_HeLa_CUDC101_4h_R1 2 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(1)RS(1)PS(0.98)S(0.02)PELNNK;S(1)RS(0.999)PS(0.911)S(0.091)PELNNK ; 158.25 0.000969 42119000 11067.6 10070.1 10046.7 9975.6 10878.5 10269.4 9656.6 10197 11225.5 10370.1 TRUE FALSE FALSE 9770.272705 10380.34784 10589.85499 10382.44809 10076.01473 10073.5283 10029.0583 11357.78526 10762.78014 10308.41818 0.947795533 1.006977759 1.027301648 1.0071815 0.977454984 0.977213781 0.97289983 1.1017971 1.044076787 1 13.33153535 -7.210745269 22.81458953 0.975347888 1.006712783 0 0.042924661 213.5604837 96111.17826 0.006385783 0.007820942 6.16E-08 7.210745269 0.031364895 TTKPPYPGS(ph)PVKYR ddPTM_HeLa_CUDC101_4h_R1 1 TTKPPYPGSPVKYR 14 2 Q96T17;Q96T17-2;Q96T17-5;Q96T17-4 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 TTKPPY(0.001)PGS(0.999)PVKYR 86.573 0.015316 34592000 1529 1858 2317.4 1678.4 2556.5 1731.4 1848.3 2676.2 2103 1200.1 TRUE FALSE FALSE 1349.772938 1915.242778 2442.685654 1746.852407 2367.912088 1698.37643 1919.58955 2980.84779 2016.31345 1192.961752 1.131446952 1.605451956 2.047580863 1.464298754 1.984901934 1.423663774 1.609095637 2.498695189 1.690174431 1 10.22033207 -7.209459675 2.913443114 1.055421822 1.801091034 0.274626313 0.358589845 0.134035382 2.224421441 0.048559524 0.05871731 6.17E-08 7.209459675 0.745669213 EERS(ph)PQTLAPVGEDAMK ddPTM_HeLa_CUDC101_4h_R1 3 EERSPQTLAPVGEDAMK 17 1 Q92797 Q92797 SYMPK Symplekin 1 0 EERS(0.988)PQT(0.012)LAPVGEDAMK;EERS(1)PQTLAPVGEDAMK;EERS(0.896)PQT(0.104)LAPVGEDAMK ;; 112.82 0.00046139 99160000 13360.5 9039.8 8853.8 9353 9352.7 10284.8 9455.7 6149.5 9517.3 10473.6 TRUE FALSE FALSE 11794.40244 9318.305523 9332.463209 9734.455767 8662.769954 10088.63458 9820.409516 6849.534223 9124.992866 10411.30256 1.132845998 0.895018224 0.896378062 0.93498923 0.832054385 0.969007914 0.943245041 0.657894071 0.876450647 1 13.34586296 -7.209322394 8.593893003 1.062692156 0.882883302 0.172835453 0.105279398 0.251726452 39.45127921 0.015013827 0.018377375 6.18E-08 7.209322394 -0.179808854 ISSIQSIVPALEIANAHR ddPTM_HeLa_CUDC101_4h_R1 2 ISSIQSIVPALEIANAHR 18 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 130.95 1.29E-05 13289000 6987 6018.8 4985.7 6117.5 6426.3 6273.6 6048 5128.9 5284 7327.8 FALSE FALSE TRUE 6167.994452 6204.232094 5255.242023 6366.998092 5952.244652 6153.941533 6281.273386 5712.753244 5066.191283 7284.21392 0.84676185 0.851736668 0.7214563 0.874081701 0.817143033 0.84483262 0.862313141 0.784264892 0.695502815 1 12.83055758 -8.881427265 0.620018344 1.009076246 0.822137078 0 0.102993549 0.35202383 0.241149894 0.034356044 0.009707987 1.31E-09 8.881427265 -0.186939168 DSDQVAQS(ph)DGEESPAAEEQLLGEHIK ddPTM_HeLa_CUDC101_4h_R1 3 DSDQVAQSDGEESPAAEEQLLGEHIK 26 0 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H0Y8V7 D6REX3 SEC31A Protein transport protein Sec31A 1 0 DS(0.007)DQVAQS(0.976)DGEES(0.016)PAAEEQLLGEHIK;DS(0.002)DQVAQS(0.499)DGEES(0.499)PAAEEQLLGEHIK;DS(0.002)DQVAQS(0.986)DGEES(0.012)PAAEEQLLGEHIK ;; 148.34 4.30E-11 42841000 10709.7 7137.2 6961.3 6490.9 6918.1 7099.8 7240.3 6548.7 8741.6 9313.8 TRUE FALSE FALSE 9454.325201 7357.088672 7337.648935 6755.626958 6407.765546 6964.383144 7519.560796 7294.177537 8381.267548 9258.401103 1.021161764 0.794639224 0.792539538 0.729675338 0.692102824 0.752223096 0.81218784 0.787844192 0.905260796 1 13.17654735 -7.208836045 4.11570024 1.010499439 0.761088912 0.803265185 0.046724299 0.043491472 1.549005656 0.006176777 0.007504908 6.18E-08 7.208836045 -0.249410527 ISSPTETER ddPTM_HeLa_CUDC101_4h_R1 2 ISSPTETER 9 0 P31949 P31949 S100A11 "Protein S100-A11;Protein S100-A11, N-terminally processed" 0 0 ; ; 136.27 0.013093 51635000 3073.3 2586.4 2894 2934.4 2790.4 2740.7 2409.58 2594.2 2654.7 2297.47 FALSE FALSE TRUE 2713.052433 2666.083918 3050.458394 3054.077516 2584.557751 2688.425714 2502.518308 2889.513242 2545.272142 2283.804546 1.187952987 1.167387079 1.335691532 1.337276222 1.131689555 1.177169788 1.095767285 1.265219148 1.114487729 1 11.15722347 -8.841263609 0.706312843 0.99862126 1.213562641 0.334181472 0.082640888 0.465446674 0.434302947 0.054118504 0.017790909 1.44E-09 8.841263609 0.214941381 MESEGGADDS(ph)AEEGDLLDDDDNEDRGDDQLELIK ddPTM_HeLa_CUDC101_4h_R1 1 MESEGGADDSAEEGDLLDDDDNEDRGDDQLELIK 34 1 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2D6;G3V2Q1;P07910-4;G3V5V7 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 MESEGGADDS(1)AEEGDLLDDDDNEDRGDDQLELIK 100.57 1.13E-12 4604300 2542.2 1832.8 1435.7 1943 1840.9 2022.4 1788.5 1586 2576.3 2224 TRUE FALSE FALSE 2244.20717 1889.266396 1513.318285 2022.243938 1705.100475 1983.82609 1857.483044 1766.543829 2470.103824 2210.771549 1.01512396 0.854573326 0.684520427 0.91472316 0.771269413 0.897345585 0.840196738 0.799062133 1.117303968 1 11.11033424 -7.208613886 4.799657314 1.007325151 0.821197342 0.668505402 0.070140358 0.084700907 4.292394337 0.009449711 0.011512132 6.19E-08 7.208613886 -0.186127809 AEGEWEDQEALDY(ph)FSDKESGK ddPTM_HeLa_CUDC101_4h_R1 2 AEGEWEDQEALDYFSDKESGK 21 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEWEDQEALDY(0.48)FS(0.412)DKES(0.108)GK;AEGEWEDQEALDY(0.912)FS(0.087)DKES(0.001)GK ; 93.029 0.00092789 2391200000 6998.7 6028.8 5439.3 5208.5 6344.1 6037.2 5230.2 5490.6 6800.8 6535.6 TRUE FALSE FALSE 6178.322995 6214.540182 5733.365011 5420.925143 5876.108382 5922.050469 5431.930566 6115.62771 6520.468145 6496.725961 0.950990242 0.956564925 0.88250067 0.834408774 0.904472255 0.911543831 0.836102769 0.941339953 1.003654485 1 12.66549714 -7.207684301 0.988155579 0.98436194 0.882335833 0.629454567 0.034535505 0.230994733 0.444188351 0.007386922 0.009031899 6.20E-08 7.207684301 -0.102026106 KTEFLDLDNSPLSPPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 KTEFLDLDNSPLSPPSPR 18 1 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 KTEFLDLDNS(0.001)PLS(0.018)PPS(0.981)PR;KTEFLDLDNSPLSPPS(1)PR ; 123.54 4.41E-05 42389000 7606.9 6009.5 5526.4 5634.8 6368.8 5726.1 5393.1 6255.8 6547.9 6969.9 TRUE FALSE FALSE 6715.230713 6194.645572 5825.1739 5864.6115 5898.986312 5616.884183 5601.113674 6967.934985 6277.992791 6928.442725 0.969226561 0.894089165 0.840762366 0.846454497 0.851415902 0.810699374 0.808423176 1.00570002 0.906118884 1 12.75831541 -7.206457937 2.125748394 0.987823665 0.854614309 0.325782831 0.058457051 0.159411959 1.371828992 0.00897615 0.010862172 6.22E-08 7.206457937 -0.133209356 SGGGYGGDRS(ph)SGGGYSGDR ddPTM_HeLa_CUDC101_4h_R1 2 SGGGYGGDRSSGGGYSGDR 19 1 Q92804-2;Q92804;A0A075B7F4 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 1 0 S(0.001)GGGY(0.1)GGDRS(0.446)S(0.446)GGGY(0.005)S(0.001)GDR;S(0.002)GGGY(0.01)GGDRS(0.493)S(0.493)GGGY(0.001)SGDR ; 56.9 0.022812 67038000 1974.89 2348.9 2350.7 2357.7 3121.7 2465.2 2124.78 1528.87 2649.8 2375.3 TRUE FALSE FALSE 1743.396388 2421.266825 2477.785952 2453.857197 2891.41841 2418.180417 2206.733476 1702.910381 2540.574122 2361.17161 0.738360728 1.025451439 1.049388338 1.039254066 1.224569361 1.024144288 0.934592584 0.721214152 1.075980294 1 11.20528719 -7.206180787 24.9553788 0.876447993 1.012607418 0 0.145750307 424.9941846 191932.0281 0.025476099 0.03120171 6.22E-08 7.206180787 0.136159425 ISVYYNEATGGK ddPTM_HeLa_CUDC101_4h_R1 2 ISVYYNEATGGK 12 0 Q5JP53;P07437 Q5JP53 TUBB Tubulin beta chain 0 0 ; ; 250.7 1.02E-39 3130500 2262.75 1768.31 1956.74 1942.09 2275.19 1998.94 1517.56 1905.78 1948.49 2002.57 FALSE FALSE TRUE 1997.513875 1822.789535 2062.527283 2021.296825 2107.353767 1960.81355 1576.092798 2122.726292 1868.172417 1990.658625 1.00344371 0.915671584 1.036102955 1.015390987 1.058621373 0.985007437 0.79174439 1.066343704 0.938469507 1 10.95903012 -4.977174983 24.99962034 1.002780421 0.918877 0.104041282 0.073504267 252.2587895 276288.8288 0.008577214 0.02572963 1.05E-05 4.977174983 -0.083903421 ISVYYNEATGGK(ac)YVPR ddPTM_HeLa_CUDC101_4h_R1 1 ISVYYNEATGGKYVPR 16 1 Q5JP53;P07437 Q5JP53 TUBB Tubulin beta chain 0 1 ISVYYNEATGGK(1)YVPR 160.46 0.00022581 584790 0 0 0 0 57.819 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 53.55380756 0 0 0 0 0 0 GSVPLSSSPPAT(ph)HFPDETEITNPVPK ddPTM_HeLa_CUDC101_4h_R1 2 GSVPLSSSPPATHFPDETEITNPVPK 26 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 GSVPLS(0.003)S(0.009)S(0.053)PPAT(0.935)HFPDETEITNPVPK;GS(0.001)VPLS(0.087)S(0.285)S(0.244)PPAT(0.384)HFPDETEITNPVPK ; 112.41 1.36E-07 1586570000 14265.4 9311.9 8908.4 9087.1 8632.7 10056.3 9027.8 7141.4 8207.5 12570.2 TRUE FALSE FALSE 12593.23144 9598.788602 9390.01505 9457.711216 7995.88292 9864.492832 9376.00527 7954.348109 7869.183376 12495.43189 1.007826824 0.76818382 0.75147583 0.756893503 0.639904486 0.789447929 0.750354638 0.636580486 0.629764817 1 13.60911315 -7.204955055 3.616462216 1.004650764 0.725367302 0.014961311 0.127504364 0.05120292 1.350649759 0.007661992 0.009302928 6.24E-08 7.204955055 -0.279283462 TVKEPEGPPPS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 2 TVKEPEGPPPSPGK 14 1 P58012 P58012 FOXL2 Forkhead box protein L2 1 0 TVKEPEGPPPS(1)PGK;TVKEPEGPPPS(1)PGK ; 93.215 0.0064105 60907000 12990.9 10549.9 11205.2 9739.9 10404 11134.2 10554.1 11341.9 12211 11765.6 TRUE FALSE FALSE 11468.12639 10874.92991 11810.98701 10137.13522 9636.517648 10921.83369 10961.17517 12633.01605 11707.65741 11695.61769 0.980549014 0.929829463 1.00986432 0.866746459 0.8239426 0.933839834 0.937203615 1.080149539 1.001029422 1 13.51368044 -7.204456054 1.170801648 0.993575581 0.930558478 0.116671249 0.066334378 0.654095455 1.735145069 0.013703472 0.016709277 6.25E-08 7.204456054 -0.063017103 MEPQS(ph)PGEVKK ddPTM_HeLa_CUDC101_4h_R1 1 MEPQSPGEVKK 11 1 H9KVD4;E7EUL6;A0A0C3SFZ7;Q03112-8;Q03112-5;Q03112-6;Q03112-1;Q03112-4;Q03112;Q03112-3 H9KVD4 MECOM MDS1 and EVI1 complex locus protein EVI1 1 0 MEPQS(1)PGEVKK 105.95 0.016685 5347400 1070.8 695 462.91 821.84 627.62 656.28 619.32 500.34 627.93 987.78 TRUE FALSE FALSE 945.2824472 716.4121262 487.9363148 855.3581875 581.321723 643.7625524 643.2073799 557.2966832 602.0464596 981.9046406 0.962702902 0.729614768 0.496928413 0.871121443 0.592034806 0.655626347 0.655060943 0.567567012 0.613141475 1 9.939439111 -7.203907235 3.457252955 0.984069918 0.647307524 0.17769181 0.148747759 0.08171842 1.951210072 0.014435738 0.017522816 6.25E-08 7.203907235 -0.336762395 TPS(ph)SEEISPTK ddPTM_HeLa_CUDC101_4h_R1 4 TPSSEEISPTK 11 0 J3QLT3;E7ENF8;A0A1W2PRI7;Q15311 J3QLT3 RALBP1 RalA-binding protein 1 1 0 T(0.123)PS(0.438)S(0.438)EEIS(0.001)PTK;T(0.205)PS(0.728)S(0.067)EEISPTK;T(0.32)PS(0.34)S(0.34)EEISPTK;T(0.341)PS(0.656)S(0.004)EEISPTK ;;; 171.62 7.71E-07 149518000 15258.6 12326.4 12253.9 10831.9 11482.3 12330.4 10668 10081.8 11997.9 15080 TRUE FALSE FALSE 13470.01004 12706.16177 12916.3829 11273.6717 10635.2736 12095.21816 11079.46833 11229.47136 11503.34148 14990.30349 0.898581543 0.847625385 0.861649193 0.752064273 0.70947687 0.806869465 0.739109007 0.749115678 0.767385496 1 13.87174197 -7.203766993 0.458847845 0.993708521 0.7314724 0.194189915 0.076142284 0.197348307 0.102957889 0.014657925 0.018148279 6.26E-08 7.203766993 -0.262236121 ETERAS(ph)PIKMDLAPSK ddPTM_HeLa_CUDC101_4h_R1 5 ETERASPIKMDLAPSK 16 2 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 ET(0.064)ERAS(0.923)PIKMDLAPS(0.013)K;ET(0.116)ERAS(0.884)PIKMDLAPSK;ET(0.008)ERAS(0.992)PIKMDLAPSK;ET(0.005)ERAS(0.987)PIKMDLAPS(0.008)K;ET(0.008)ERAS(0.992)PIKMDLAPSK ;;;; 106.31 0.0074947 3561053700 18938.6 18304.7 18615.7 17972.3 20958 18303.8 16981.8 18620.3 17943.6 18326.5 TRUE FALSE FALSE 16718.64602 18868.64611 19622.12105 18705.28808 19411.97009 17954.68551 17636.79371 20739.95969 17203.95721 18217.49316 0.917724841 1.035743279 1.077103248 1.026776182 1.06556758 0.985573885 0.968124075 1.138463975 0.944364686 1 14.15303683 -7.203373435 10.52645207 0.961157149 1.039093226 0.405348706 0.048744936 0.633696929 113.340158 0.008599524 0.010532159 6.26E-08 7.203373435 0.077936077 KT(ph)DFFIGGEEGMAEK ddPTM_HeLa_CUDC101_4h_R1 1 KTDFFIGGEEGMAEK 15 1 Q9Y266;A0A0A0MSU9 Q9Y266 NUDC Nuclear migration protein nudC 1 0 KT(1)DFFIGGEEGMAEK 67.095 0.035884 1918500 1052.7 627.08 460.83 554.65 706.27 686.77 716.02 603.88 712.75 753.8 TRUE FALSE FALSE 929.3041018 646.3995915 485.7438637 577.2710244 654.1698692 673.6710065 743.6371313 672.6232582 683.3701433 749.3163641 1.240202598 0.862652442 0.648249374 0.770396927 0.873022265 0.899047504 0.992420781 0.897649231 0.911991485 1 9.549431148 -7.202589385 9.126225575 1.11336778 0.846349395 0.341095262 0.119247743 0.282680218 42.26569968 0.021246579 0.026020793 6.27E-08 7.202589385 -0.267018385 ITSLSS(ph)SLDTSLDFSK ddPTM_HeLa_CUDC101_4h_R1 1 ITSLSSSLDTSLDFSK 16 0 E9PR71;Q9P2Y5-2;Q9P2Y5 E9PR71 UVRAG UV radiation resistance-associated gene protein 1 0 ITSLS(0.005)S(0.841)S(0.149)LDTS(0.005)LDFSK 127.18 0.00050343 13608000 1392.4 1057.9 1046.1 895.4 1104.8 1098.4 1125 1145.9 1579.5 1124.7 TRUE FALSE FALSE 1229.184983 1090.492645 1102.65533 931.9182822 1023.301105 1077.44985 1168.391627 1276.344624 1514.392341 1118.010234 1.099439831 0.975386997 0.986265864 0.833550762 0.91528778 0.963720919 1.045063445 1.141621592 1.354542467 1 10.12671768 -7.202084657 13.87712015 1.046956094 0.974090158 0.154876625 0.124955697 3.979922724 929.0969478 0.014441228 0.017687033 6.28E-08 7.202084657 -0.072865935 ASS(ph)PELPVSVENIK ddPTM_HeLa_CUDC101_4h_R1 3 ASSPELPVSVENIK 14 0 Q969R5 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 0 AS(0.03)S(0.97)PELPVSVENIK;AS(0.048)S(0.952)PELPVSVENIK;AS(0.356)S(0.628)PELPVS(0.016)VENIK ;; 183.28 8.38E-17 0 5897.3 4012.84 4265.9 4101.1 3294.28 4290.81 3710.56 3382.37 4377.11 5793.9 TRUE FALSE FALSE 5206.027434 4136.470844 4496.527458 4268.360584 3051.267528 4208.969948 3853.677542 3767.405329 4196.683673 5759.437625 0.90391246 0.718207421 0.780723354 0.741107181 0.529785671 0.7307953 0.669106568 0.654127291 0.728662058 1 12.49171223 -7.201419666 0.725640629 0.982217615 0.653432076 0.340896759 0.100448983 0.164554966 0.180349018 0.015549959 0.019268245 6.29E-08 7.201419666 -0.328785539 S(ph)LQEEHVAVAQLR ddPTM_HeLa_CUDC101_4h_R1 4 SLQEEHVAVAQLR 13 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 S(1)LQEEHVAVAQLR;S(1)LQEEHVAVAQLR;S(1)LQEEHVAVAQLR;S(1)LQEEHVAVAQLR ;;; 110.32 0.0029247 70299900 15373.4 10628.9 10035 10861.5 11446 9757.7 10974.2 7131.8 12253.8 13907 TRUE FALSE FALSE 13571.35336 10956.36381 10577.52245 11304.47892 10601.65138 9571.58813 11397.47857 7943.655284 11748.69318 13824.28055 0.981704134 0.792544956 0.7651409 0.817726382 0.766886302 0.692375137 0.824453651 0.57461618 0.849859285 1 13.75491678 -7.200561589 2.676780346 0.993500573 0.746818413 0.535581416 0.080845867 0.093751268 1.298503992 0.010791131 0.013086235 6.30E-08 7.200561589 -0.24668216 S(ph)VVSDLEADDVK ddPTM_HeLa_CUDC101_4h_R1 4 SVVSDLEADDVK 12 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 S(0.958)VVS(0.042)DLEADDVK;S(0.999)VVS(0.001)DLEADDVK;S(1)VVSDLEADDVK;S(0.993)VVS(0.007)DLEADDVK ;;; 190.34 3.99E-11 163176400 18136.8 11364.1 9727.96 10961.5 10505.4 12896.5 11410.42 8300.91 9402.36 15421.8 TRUE FALSE FALSE 16010.8318 11714.21445 10253.88294 11408.55735 9730.437572 12650.52075 11850.52372 9245.852041 9014.790741 15330.07045 1.044406929 0.764133113 0.668873831 0.744194711 0.634728823 0.825209564 0.77302474 0.603118692 0.58804627 1 13.90407671 -7.199910585 4.524316303 1.021235426 0.715488018 0 0.150650782 0.057566167 2.412630209 0.01021743 0.012469055 6.31E-08 7.199910585 -0.305747408 VQPSGGPAADQDVLGEES(ph)PLGKPAMLHLPSEQGAPETLQR ddPTM_HeLa_CUDC101_4h_R1 1 VQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQR 40 1 C9J2V2 C9J2V2 IKBKG 1 0 VQPSGGPAADQDVLGEES(0.996)PLGKPAMLHLPS(0.003)EQGAPET(0.002)LQR 54.937 0.00073636 8125600 1086.7 716.33 699.77 797.08 1012.1 704 755.72 751.49 899.34 757.41 TRUE FALSE FALSE 959.3186733 738.3992782 737.6016829 829.5883677 937.4393994 690.5723729 784.8683735 837.036584 862.2688245 752.9048916 1.274156516 0.980733804 0.979674446 1.10185015 1.245096705 0.917210634 1.042453545 1.111742789 1.145255973 1 9.556323822 -7.199429098 24.99988084 1.129464307 1.054714356 0.120858253 0.10479862 509.8523732 205550.541 0.021642594 0.026506653 6.32E-08 7.199429098 -0.074749951 SSSSSAS(ph)PSSPSSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSSSASPSSPSSR 14 0 E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SSSSS(0.003)AS(0.484)PS(0.085)S(0.289)PS(0.138)S(0.001)R 159.58 5.20E-05 41213000 4503 2147.8 4405.7 4661.4 3003.3 2747 2914.7 1128.5 4376.7 5677.9 TRUE FALSE FALSE 3975.165166 2213.971172 4643.885469 4851.51204 2781.752542 2694.605552 3027.120955 1256.963878 4196.290574 5644.127598 0.704301081 0.392261006 0.822781801 0.859568101 0.492857841 0.477417547 0.536331063 0.222702952 0.743479041 1 12.46253489 -7.199087251 0.113654546 1.391324595 1.98E-15 0.428874802 0.172034886 4.16758449 0.40705039 2.233930976 2.435534877 6.32E-08 7.199087251 -1.391324595 ITADGAHFELR ddPTM_HeLa_CUDC101_4h_R1 1 ITADGAHFELR 11 0 J3QK89;Q8IWX8 J3QK89 CHERP Calcium homeostasis endoplasmic reticulum protein 0 0 122.7 8.52E-05 0 3446.7 2792.6 2405.2 2691.5 3367.3 2802 2685.3 2503.7 2778.4 2697 FALSE FALSE TRUE 3042.683051 2878.636696 2535.232387 2801.271004 3118.900988 2748.556518 2788.872921 2788.711088 2663.873176 2680.958124 1.134923751 1.0737343 0.945644158 1.044876822 1.163353116 1.025214267 1.040252325 1.040191961 0.993627298 1 11.38853297 ITAEIFSPNDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 ITAEIFSPNDKK 12 1 Q96SU4-5;Q96SU4-4;Q96SU4-3;Q96SU4-7;Q96SU4-2;Q96SU4;Q96SU4-6 Q96SU4-5 OSBPL9 Oxysterol-binding protein-related protein 9 0 1 ITAEIFSPNDK(1)K 81.017 0.025471 0 82.271 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 72.62731809 0 0 0 0 0 0 0 0 0 0 GALDLETCEKQDIMPEVDKQS(ph)GSPESR ddPTM_HeLa_CUDC101_4h_R1 1 GALDLETCEKQDIMPEVDKQSGSPESR 27 2 Q8NI08-2;Q8NI08;Q8NI08-7 Q8NI08-2 NCOA7 Nuclear receptor coactivator 7 1 0 GALDLET(0.017)CEKQDIMPEVDKQS(0.776)GS(0.199)PES(0.008)R 59.212 0.0015681 19286000 1118.4 1576 1638.3 1791.6 2230.8 1715.5 1334.1 1694.9 1776.2 996.65 TRUE FALSE FALSE 987.3028474 1624.554692 1726.871454 1864.669192 2066.238328 1682.779696 1385.556684 1887.840565 1702.984284 990.7218815 0.996548947 1.63976866 1.743043619 1.882131834 2.085588667 1.698538941 1.398532434 1.905520207 1.718932746 1 9.952336306 -7.198662297 3.41169283 0.995230513 1.777408967 0.343741519 0.28282822 0.07240678 1.667220445 0.029447302 0.035805628 6.33E-08 7.198662297 0.782178454 KLESGGGGEGGEGT(ph)EEEDGAER ddPTM_HeLa_CUDC101_4h_R1 2 KLESGGGGEGGEGTEEEDGAER 22 1 Q96LA8 Q96LA8 PRMT6 Protein arginine N-methyltransferase 6 1 0 KLESGGGGEGGEGT(1)EEEDGAER;KLESGGGGEGGEGT(1)EEEDGAER ; 178.41 3.73E-09 40373000 3925.1 2913.3 2918.6 2820.3 2920.8 2648.4 3018.9 2902.3 3074.2 3437.6 TRUE FALSE FALSE 3465.005728 3003.05532 3076.388344 2935.324024 2705.338403 2597.886183 3135.339984 3232.6861 2947.480175 3417.153002 1.014003683 0.878817928 0.900278197 0.858996955 0.79169367 0.760248716 0.91752988 0.946017371 0.862554347 1 11.73857913 -7.197183588 3.610729438 1.007013703 0.858845801 0.193922143 0.069386069 0.120074149 3.105411159 0.00947554 0.011535987 6.35E-08 7.197183588 -0.148167902 TLS(ph)PTPASATAPTSQGIPTS(ph)DEESTPKK ddPTM_HeLa_CUDC101_4h_R1 1 TLSPTPASATAPTSQGIPTSDEESTPKK 28 1 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 2 0 T(0.178)LS(0.64)PT(0.138)PAS(0.03)AT(0.019)APT(0.02)S(0.02)QGIPT(0.3)S(0.624)DEES(0.014)T(0.015)PKK 52.812 0.008177 7296900 938.24 1118.5 1134.7 1205.6 1281.3 1290.3 935.62 948.53 971.36 1082.1 TRUE FALSE FALSE 828.2609295 1152.959659 1196.045314 1254.769579 1186.781052 1265.689677 971.7071768 1056.506821 931.3201297 1075.663621 0.769999945 1.071858931 1.111913884 1.166507405 1.103301282 1.176659369 0.903355991 0.982190715 0.865809823 1 10.07101128 -7.196239555 11.21710807 0.891405722 1.07736768 0.479186296 0.092857607 0.71743408 122.139995 0.01924609 0.0235739 6.36E-08 7.196239555 0.185961958 EREES(ph)EDELEEANGNNPIDIEVDQNKESK ddPTM_HeLa_CUDC101_4h_R1 4 EREESEDELEEANGNNPIDIEVDQNKESK 29 2 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 EREES(1)EDELEEANGNNPIDIEVDQNKESK;EREES(1)EDELEEANGNNPIDIEVDQNKESK;EREES(1)EDELEEANGNNPIDIEVDQNKESK;EREES(1)EDELEEANGNNPIDIEVDQNKESK ;;; 129.52 8.81E-15 149904000 8194.62 8568.62 8108.61 8651.23 10634.7 8395.6 8406.41 9241.85 8567.1 7517.51 TRUE FALSE FALSE 7234.059066 8832.609026 8546.985984 9004.064553 9850.199368 8235.467918 8730.64805 10293.90485 8213.960512 7472.795516 0.968052592 1.181968516 1.143746803 1.204912477 1.318141162 1.102059852 1.168324228 1.377517266 1.099181758 1 12.86743233 -7.195782225 3.885668434 0.984509269 1.211893188 0.505359534 0.084550535 0.100610849 3.018099686 0.012547203 0.015298168 6.37E-08 7.195782225 0.227383919 ITEFCHR ddPTM_HeLa_CUDC101_4h_R1 4 ITEFCHR 7 0 P07237;H7BZ94;H0Y3Z3;I3L398 P07237 P4HB Protein disulfide-isomerase 0 0 ;;; ;;; 193.98 4.01E-13 68070000 19741.9 14649.7 13228.2 15989.6 17232.1 16220 14082.2 13778.3 13589.3 9013.6 FALSE FALSE TRUE 17427.78441 15101.03989 13943.35651 16641.725 15960.92231 15910.63052 14625.35517 15346.76598 13029.1433 8959.986706 1.94506811 1.685386417 1.55618049 1.857338135 1.78135558 1.775742648 1.632296526 1.712811244 1.454147615 1 13.12928088 -9.37305884 0.990456467 0.98022849 1.752858186 0.54342006 0.170580546 0.16324508 0.274681987 0.092688509 0.021614337 4.24E-10 9.37305884 0.772629696 ITEK(ac)LEK ddPTM_HeLa_CUDC101_4h_R1 1 ITEKLEK 7 1 P51532-5;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;P51532;A0A2R8Y4C5;P51532-4;P51532-2;P51532-3;A0A2R8YGP5 P51532-5 SMARCA4 Transcription activator BRG1 0 1 ITEK(1)LEK 109.71 0.0083276 10195000 5064.7 3958.8 3948.1 4375.7 4326.1 3949.3 3986.8 4383.3 3559.7 4003.3 FALSE TRUE FALSE 4471.023544 4080.765936 4161.546228 4554.159959 4006.972222 3873.973682 4140.572211 4882.277154 3412.967659 3979.488194 1.123517228 1.025449942 1.045749108 1.144408461 1.006906423 0.973485407 1.040478577 1.22686057 0.85763985 1 11.95836718 -7.933448775 0.006674729 3.10E-05 2.114661456 0.122640674 0.090433849 8061.901495 33.59475162 5366.555328 5274.497611 1.17E-08 7.933448775 2.114630412 RS(ph)SDPLGDTASNLGSAVDELMR ddPTM_HeLa_CUDC101_4h_R1 2 RSSDPLGDTASNLGSAVDELMR 22 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 RS(0.642)S(0.358)DPLGDTASNLGSAVDELMR;RS(0.5)S(0.5)DPLGDTASNLGSAVDELMR ; 172.17 7.32E-10 11564900 1650.39 1210.59 1103.69 1217.35 1299.5 1274.51 1426.95 1030.14 1448.47 1270.58 TRUE FALSE FALSE 1456.933786 1247.886843 1163.35882 1266.998795 1203.638474 1250.200845 1481.987939 1147.406974 1388.763454 1263.022534 1.153529527 0.988016294 0.921091104 1.003148211 0.952982581 0.989848409 1.173366191 0.908461206 1.099555563 1 10.30266466 -7.195626388 24.99983653 1.072500251 0.994276031 0.23131297 0.07693516 274.289881 104191.9178 0.014293378 0.017505746 6.37E-08 7.195626388 -0.078224221 NPPNQS(ph)S(ph)NERPPSLLVIET(ph)KK ddPTM_HeLa_CUDC101_4h_R1 1 NPPNQSSNERPPSLLVIETKK 21 2 O15042-2;O15042;E7ET15;E7EW00;H0Y8D9 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 3 0 NPPNQS(0.98)S(0.98)NERPPS(0.054)LLVIET(0.986)KK 47.397 0.0033495 0 1151.9 1193 1191.7 1260.4 1363.3 1132.6 1352.5 729.19 1313.5 1222.1 TRUE FALSE FALSE 1016.876028 1229.754916 1256.126907 1311.80456 1262.732075 1110.997542 1404.666378 812.1980421 1259.356974 1214.830895 0.837051504 1.012284855 1.033993218 1.079824826 1.039430328 0.914528554 1.156264945 0.668568807 1.03665208 1 10.24653979 -7.195324528 24.98570534 0.92305159 0.997643446 0 0.132897237 409.0548759 154586.9589 0.020706847 0.025360602 6.38E-08 7.195324528 0.074591856 TS(ph)SEDNLYLAVLR ddPTM_HeLa_CUDC101_4h_R1 2 TSSEDNLYLAVLR 13 0 Q15149-4 Q15149-4 PLEC Plectin 1 0 T(0.015)S(0.641)S(0.344)EDNLYLAVLR;T(0.025)S(0.569)S(0.406)EDNLYLAVLR ; 199.38 1.32E-16 2937305900 4450.86 3318.32 3409.97 3412.41 3667.27 3405.24 3344.66 3642.83 3749.56 3473.61 TRUE FALSE FALSE 3929.136938 3420.553506 3594.323293 3551.582829 3396.742798 3340.290721 3473.664657 4057.515042 3595.00155 3452.948813 1.13790767 0.990618075 1.040943115 1.028565154 0.983722314 0.967373367 1.005999464 1.175086936 1.041139543 1 11.75361323 -7.194748195 24.99935838 1.065124207 1.023212668 0.047271134 0.062895886 415.3581535 155697.6527 0.01202392 0.014726234 6.39E-08 7.194748195 -0.04191154 ITESEEVVSR ddPTM_HeLa_CUDC101_4h_R1 2 ITESEEVVSR 10 0 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 150.27 0.0026035 50900000 3969.1 4200.4 3711.7 3562.9 3839.3 3685 3687.7 4118.8 3739.7 3887.9 FALSE FALSE TRUE 3503.848115 4329.809345 3912.365729 3708.210462 3556.082488 3614.714765 3829.935824 4587.667543 3585.547983 3864.774598 0.906611246 1.120326486 1.012314077 0.959489452 0.920126749 0.935297693 0.990985561 1.187046599 0.927750867 1 11.91616856 -4.267656292 4.024770453 0.967248324 1.205251986 0.536198853 0.059248001 0.140782998 4.784425623 0.008800975 0.096387582 5.40E-05 4.267656292 0.238003662 GCTSSSSLS(ph)PPRGDR ddPTM_HeLa_CUDC101_4h_R1 1 GCTSSSSLSPPRGDR 15 1 X6RLP6;Q96LT9-2;Q96LT9 X6RLP6 RNPC3 RNA-binding protein 40 1 0 GCTS(0.002)S(0.011)S(0.011)S(0.008)LS(0.966)PPRGDR 103.13 0.0018888 0 1101.9 1154.2 1358.5 1157.3 1255.8 1266.8 1078.2 1069.2 1289.5 1054.2 TRUE FALSE FALSE 972.7369524 1189.759534 1431.944619 1204.499696 1163.162136 1242.637901 1119.786535 1190.913406 1236.346264 1047.929572 0.928246496 1.135343029 1.366451199 1.149409015 1.109962127 1.185802877 1.068570413 1.136444126 1.179799003 1 10.03332605 -7.193033693 5.703452525 0.966214672 1.168163947 0.166170653 0.101506658 0.114968683 7.158046449 0.013246272 0.016222561 6.41E-08 7.193033693 0.201949275 ITITNDK(ac)GR ddPTM_HeLa_CUDC101_4h_R1 2 ITITNDKGR 9 1 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13;P54652;P17066;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;Q53FA3;P34931 P11142;P54652;P17066;A0A0G2JIW1;Q53FA3 HSPA8;HSPA2;HSPA6;HSPA1B;HSPA1A;HSPA1L Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 0 1 ; ITITNDK(1)GR;ITITNDK(1)GR 143.7 0.0015187 8343300 6519.6 3028.1 2194.8 2960.3 5789.3 4755.6 5472.1 4087.8 3266 1219.57 FALSE TRUE FALSE 5755.382371 3121.392172 2313.457527 3081.03383 5362.234873 4664.894853 5683.16073 4553.138629 3131.374098 1212.315943 4.747427766 2.574734902 1.908295886 2.541444618 4.423133179 3.847920073 4.687854483 3.755735997 2.582968668 1 10.24355002 -9.489647898 1.175889949 0.968687361 3.646219244 0.27752192 1.025154114 0.344651659 0.836515697 0.7637116 0.177345317 3.24E-10 9.489647898 2.677531883 ITLDNAYMEK ddPTM_HeLa_CUDC101_4h_R1 2 ITLDNAYMEK 10 0 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 169.12 1.88E-06 132665000 2625.1 2188.09 1840.92 2126.5 2106.8 1923.73 1795.8 1791.03 1842.04 1513.16 FALSE FALSE TRUE 2317.389757 2255.502459 1940.445704 2213.227862 1951.385561 1887.038055 1865.064608 1994.913616 1766.110332 1504.159657 1.54065411 1.499510008 1.290053017 1.471404881 1.297326087 1.254546382 1.239937927 1.32626454 1.174150844 1 10.55474199 -9.481056957 1.23609221 1.001023571 1.379315579 0.470649351 0.11236696 0.255443244 0.701320976 0.080983907 0.020051861 3.30E-10 9.481056957 0.378292008 ITLPVDFVTADKFDENAK ddPTM_HeLa_CUDC101_4h_R1 2 ITLPVDFVTADKFDENAK 18 1 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 ; ; 144.41 0.0001079 133576000 6294.7 4598.5 4411.1 4360.4 4974.5 5131.3 4949.2 5013.8 5395.2 5313.4 FALSE FALSE TRUE 5556.844808 4740.174334 4649.577409 4538.235959 4607.541046 5033.429002 5140.092302 5584.550726 5172.807572 5281.79566 1.052074932 0.897455078 0.880302402 0.859222176 0.872343677 0.952976852 0.973171367 1.05732048 0.979365334 1 12.36681277 -7.261015174 24.99991487 1.024590941 0.923707405 0.288302333 0.058250354 30.4663849 1795511.465 0.010399822 0.012327884 5.48E-08 7.261015174 -0.100883535 ITPAHDQNDYEVGQR ddPTM_HeLa_CUDC101_4h_R1 2 ITPAHDQNDYEVGQR 15 0 P26640;A0A140T936 P26640 VARS Valine--tRNA ligase 0 0 ; ; 147.7 2.48E-06 10304000 2064.9 2049.13 1759.68 1981.19 2056.36 2400.1 2276.2 1915.01 2460.5 2639.3 FALSE FALSE TRUE 1822.855552 2112.261266 1854.813624 2061.991492 1904.66642 2354.322091 2363.993796 2133.006998 2359.077149 2623.601326 0.694791367 0.805099939 0.706972361 0.785939339 0.725974027 0.897362746 0.90104917 0.813007287 0.899175162 1 11.35733279 -9.473678792 1.208243522 1.000192991 0.78360693 0.404396416 0.07315832 0.29302347 0.764203592 0.052586016 0.012871414 3.36E-10 9.473678792 -0.216586062 ITPLEIEVLEETVQTMDTS ddPTM_HeLa_CUDC101_4h_R1 5 ITPLEIEVLEETVQTMDTS 19 0 Q99436 Q99436 PSMB7 Proteasome subunit beta type-7 0 0 ;;;; ;;;; 162.68 6.55E-05 557920000 4799.12 4085.67 4003.26 4121.47 4480.91 4623.97 4053.3 4216.9 4506.26 4487.75 FALSE FALSE TRUE 4236.574429 4211.54465 4219.688345 4289.561361 4150.362197 4535.775476 4209.637139 4696.934851 4320.510055 4461.056663 0.949679582 0.944068854 0.945894362 0.961557246 0.930354064 1.016749129 0.943641262 1.052874959 0.968494772 1 12.12316976 -4.250549102 24.43187933 0.968660848 1.052875025 0.503543962 0.02630945 860.9019507 1931345.928 0.004028396 0.076884915 5.62E-05 4.250549102 0.084214177 SLSES(ph)YELSSDLQDK ddPTM_HeLa_CUDC101_4h_R1 1 SLSESYELSSDLQDK 15 0 A0A2R8Y7T6;A0A3B3IRZ4;Q6DN90;Q6DN90-3;A0A2R8Y695 A0A2R8Y7T6 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 0 SLS(0.156)ES(0.843)YELSSDLQDK 192.32 1.07E-11 2849300 637.9 651.88 747.48 656.7 704.75 585.27 583.65 800.18 722.56 603.38 TRUE FALSE FALSE 563.126329 671.9636501 787.8910298 683.4830645 652.7619966 574.1069499 606.161576 891.2692568 692.775771 599.7910689 0.938870814 1.120329536 1.313609139 1.139535248 1.088315633 0.957178224 1.01062121 1.485966202 1.155028487 1 9.22831623 -7.192765289 5.624841817 0.971215922 1.14957717 0.090011593 0.153728885 0.229321385 13.88334258 0.023429123 0.028692757 6.42E-08 7.192765289 0.178361248 NQNYLVPS(ph)PVLR ddPTM_HeLa_CUDC101_4h_R1 1 NQNYLVPSPVLR 12 0 C9J3R1;C9IZP0;J3KR59;J3KR68;Q9UID6 C9J3R1 ZNF639 Zinc finger protein 639 1 0 NQNYLVPS(1)PVLR 132.31 0.0014906 14657000 2458.4 1881.5 1755.7 1408.7 1867.4 2143.7 1719.9 2251.4 2009.7 2172.6 TRUE FALSE FALSE 2170.230079 1939.466785 1850.618453 1466.152875 1729.645622 2102.812494 1786.237119 2507.690276 1926.859315 2159.677279 1.004886286 0.898035463 0.856895829 0.678875909 0.80088152 0.973669777 0.827085202 1.161141204 0.892197799 1 11.07660003 -7.191792487 3.791776561 1.002616045 0.872113791 0.055456558 0.122820442 0.277114408 7.819238874 0.019578689 0.023892963 6.43E-08 7.191792487 -0.130502254 LYKS(ph)EPELTTVAEVDESNGEEKSEPVSEIETSVVK ddPTM_HeLa_CUDC101_4h_R1 1 LYKSEPELTTVAEVDESNGEEKSEPVSEIETSVVK 35 2 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 LY(0.289)KS(0.68)EPELT(0.024)T(0.007)VAEVDESNGEEKSEPVSEIETSVVK 69.054 1.74E-06 49131000 1203 1283.8 1399.6 1231.9 1545.6 1596.4 1384.6 1008.7 1046.6 1072.8 TRUE FALSE FALSE 1061.986164 1323.352356 1475.26661 1282.142207 1431.584167 1565.95133 1438.004486 1123.526331 1003.458705 1066.418938 0.995843309 1.240931035 1.383383731 1.202287545 1.342421929 1.468420406 1.348442375 1.053550618 0.94096107 1 10.05855859 -7.191112871 3.746805831 0.997227001 1.307337641 0.643545675 0.106776518 0.103986692 2.859866622 0.017367055 0.02119522 6.44E-08 7.191112871 0.31011064 AT(ph)ISDEEIER ddPTM_HeLa_CUDC101_4h_R1 1 ATISDEEIER 10 0 C9J0A7;Q9UQN3-2;Q9UQN3 C9J0A7 CHMP2B Charged multivesicular body protein 2b 1 0 AT(0.519)IS(0.481)DEEIER 179.94 1.39E-07 499620000 2369.8 1815.3 1829.6 1740.7 1959.9 1707.8 1813.2 1795.2 1780.8 2033.4 TRUE FALSE FALSE 2092.015636 1871.227241 1928.51371 1811.69327 1815.322082 1675.22656 1883.135731 1999.558312 1707.39467 2021.305246 1.034982539 0.925751934 0.954093259 0.896298703 0.898093984 0.828784551 0.931643419 0.989241143 0.844699074 1 10.98107149 -7.191018998 4.888147368 1.016505265 0.913662968 0 0.06755821 0.118901386 5.470106548 0.007080095 0.008665938 6.44E-08 7.191018998 -0.102842297 GAPVIVPELGKPRQS(ph)PLTYEDHGAPFAGHLPR ddPTM_HeLa_CUDC101_4h_R1 1 GAPVIVPELGKPRQSPLTYEDHGAPFAGHLPR 32 2 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 GAPVIVPELGKPRQS(0.998)PLT(0.002)YEDHGAPFAGHLPR 78.583 1.24E-06 41877000 1948.3 1978 1859.6 2101.1 2389.4 2056 1887.1 2200.2 1961.8 1597.3 TRUE FALSE FALSE 1719.923227 2038.939835 1960.135601 2186.79194 2213.138722 2016.785226 1959.886079 2450.661874 1880.933774 1587.799189 1.083212058 1.284129536 1.234498427 1.37724717 1.393840442 1.270176506 1.234341278 1.543433132 1.184616913 1 10.63281275 -7.19074276 0.988394226 1.02151929 1.353988614 0.555179002 0.098591798 0.16831634 0.32360663 0.01744355 0.021515575 6.45E-08 7.19074276 0.332469324 ITPVTVK(ac)AQTK ddPTM_HeLa_CUDC101_4h_R1 1 ITPVTVKAQTK 11 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2;S4R3C2;S4R349 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ITPVTVK(1)AQTK 113.22 0.0043179 1729900 2559 1662.6 721.82 2019.6 1522.6 1729.5 1572.4 1699 811.81 351.96 FALSE TRUE FALSE 2259.037899 1713.822735 760.8437726 2101.968017 1410.280831 1696.512669 1633.047995 1892.407292 778.3468482 349.8665263 6.456856343 4.898504449 2.174668668 6.007914046 4.030911006 4.849028248 4.667631431 5.408940697 2.224696534 1 8.45066083 -6.249741928 24.54286853 3.666850831 4.913380257 0.212533097 1.51678885 1333.178708 2797191.053 0.325387901 0.53654639 5.63E-07 6.249741928 1.246529426 TSFSQEQSCDS(ph)AGEGSER ddPTM_HeLa_CUDC101_4h_R1 5 TSFSQEQSCDSAGEGSER 18 0 Q1RLN5;Q8IWW6-3;Q8IWW6-2;Q8IWW6-4;Q8IWW6 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 0 TSFSQEQS(0.076)CDS(0.918)AGEGS(0.007)ER;TSFSQEQS(0.002)CDS(0.998)AGEGSER;TSFSQEQS(0.012)CDS(0.978)AGEGS(0.009)ER;TSFSQEQS(0.001)CDS(0.997)AGEGS(0.002)ER;TSFSQEQSCDS(0.999)AGEGS(0.001)ER ;;;; 280.31 1.44E-104 24735000 2909 2639.59 2477.9 3090.67 3002.58 2611.46 2476.63 2531.01 3223.56 2531.26 TRUE FALSE FALSE 2568.01143 2720.912639 2611.862769 3216.720882 2781.085655 2561.650751 2572.154449 2819.129948 3090.683492 2516.203953 1.020589538 1.081356158 1.038017115 1.278402284 1.105270363 1.018061651 1.022236073 1.12039008 1.228311993 1 11.29703315 -7.190621917 1.749776458 1.007734885 1.098449177 0 0.098652341 0.377572093 2.199335221 0.013299993 0.016210495 6.45E-08 7.190621917 0.090714292 ADPPPEES(ph)QAPQAQTAAAEAP ddPTM_HeLa_CUDC101_4h_R1 1 ADPPPEESQAPQAQTAAAEAP 21 0 B9EGQ5;A0A669KBG4;M0QXA7;A0A669KBH9;A0A2R8YFV2;A0A669KAV7;O95785-4;O95785-3;O95785;O95785-2 B9EGQ5 WIZ Protein Wiz 1 0 ADPPPEES(1)QAPQAQTAAAEAP 62.438 0.014592 251460000 1053.6 2388.7 1579.3 2231.2 3833.3 3380.3 2764.1 1701.1 2828.9 161.29 TRUE FALSE FALSE 930.0986052 2462.293016 1664.681735 2322.19798 3550.525096 3315.826409 2870.712263 1894.746348 2712.291545 160.3306399 5.801128254 15.35759489 10.38280478 14.4838066 22.14501918 20.68117742 17.90495107 11.81774331 16.91686347 1 7.324906347 -7.189287589 0.733905542 1.945308329 18.1135075 0.145568085 5.770002946 0.189147286 0.211249808 0.876477065 1.094407982 6.47E-08 7.189287589 16.16819917 TWTTPEVTS(ph)PPPSPR ddPTM_HeLa_CUDC101_4h_R1 1 TWTTPEVTSPPPSPR 15 0 Q5T1S5;Q7Z6M1-2;Q7Z6M1 Q5T1S5 RABEPK Rab9 effector protein with kelch motifs 1 0 TWTTPEVT(0.219)S(0.78)PPPS(0.002)PR 112.62 0.0020539 13059000 1674 1783.7 1843.2 1542.9 1960.7 1817.1 1453.8 2067.8 1752.2 1826.1 TRUE FALSE FALSE 1477.776258 1838.653683 1942.848967 1605.826131 1816.063067 1782.441845 1509.873553 2303.189994 1679.973574 1815.238276 0.814094919 1.012899357 1.070299692 0.884636553 1.000454371 0.981932713 0.831777058 1.268808632 0.925483776 1 10.82594322 -7.189219017 24.99652467 0.912210405 0.996981824 0.115076765 0.117124376 266.8783434 92369.96628 0.019882887 0.024351463 6.47E-08 7.189219017 0.084771419 T(ph)DPAKTLGTPLCPR ddPTM_HeLa_CUDC101_4h_R1 1 TDPAKTLGTPLCPR 14 1 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 1 0 T(0.945)DPAKT(0.054)LGT(0.001)PLCPR 51.463 0.035848 5963300 2041.6 1591 1408.5 1433.4 1775.1 1732.4 1645.7 1420.7 1693 1777.4 TRUE FALSE FALSE 1802.286743 1640.016824 1484.64777 1491.860248 1644.154409 1699.357356 1709.1752 1582.426745 1623.213823 1766.827946 1.020069185 0.928226672 0.840289952 0.844372114 0.930568488 0.961812586 0.967369349 0.89563149 0.918716408 1 10.78694584 -7.188956357 4.878506449 1.009477616 0.908555969 0.242949787 0.049302501 0.127646312 5.763564251 0.007431536 0.009099565 6.47E-08 7.188956357 -0.100921647 GEGDAPFSEPGT(ph)TSTQRPSSPETATK ddPTM_HeLa_CUDC101_4h_R1 1 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GEGDAPFS(0.001)EPGT(0.178)T(0.178)S(0.178)T(0.178)QRPS(0.141)S(0.141)PET(0.006)AT(0.001)K 73.036 0.00033768 547240000 3056.5 2350.4 2181.5 2384.5 2530.6 2497.1 2027.8 2099.7 2568.4 2733.3 TRUE FALSE FALSE 2698.221703 2422.813038 2299.438489 2481.750217 2343.92268 2449.471978 2106.012925 2338.721361 2462.529465 2717.04221 0.993073164 0.891709753 0.846302085 0.913401421 0.862674371 0.901521503 0.775112333 0.86076004 0.906327276 1 11.40782126 -7.188733212 3.118973403 0.997457295 0.860744075 0.492076965 0.045144896 0.086548296 1.637913131 0.005888957 0.007178574 6.48E-08 7.188733212 -0.13671322 EYGS(ph)PLKAYT(ph)PVVVTQWYR ddPTM_HeLa_CUDC101_4h_R1 1 EYGSPLKAYTPVVVTQWYR 19 1 Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 Q5QPR4 CDK11A Cyclin-dependent kinase 11A 2 0 EY(0.007)GS(0.995)PLKAY(0.005)T(0.992)PVVVT(0.001)QWYR 91.091 0.0047997 38096000 3555.9 3635.9 3876 3491.3 4280.5 3817.4 3657.3 3499.4 3577.2 3353.6 TRUE FALSE FALSE 3139.082792 3747.917769 4085.548284 3633.690305 3964.736043 3744.589455 3798.363286 3897.757551 3429.746302 3333.652638 0.941634637 1.124267636 1.225547088 1.090002679 1.189306887 1.123269237 1.139399841 1.169215264 1.028825338 1 11.70288807 -7.187767869 5.191025794 0.972509461 1.153559468 0.760286485 0.041358654 0.060629212 3.032094056 0.006319532 0.00774226 6.49E-08 7.187767869 0.181050007 ITVEK(ac)IIK ddPTM_HeLa_CUDC101_4h_R1 1 ITVEKIIK 8 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 1 ITVEK(1)IIK 104.17 0.0096515 205170 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SKESVPEFPLS(ph)PPKKK ddPTM_HeLa_CUDC101_4h_R1 2 SKESVPEFPLSPPKKK 16 3 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 SKESVPEFPLS(1)PPKKK;SKESVPEFPLS(1)PPKKK ; 62.287 0.020176 1109830000 8863.5 9896.4 9238.8 10388.1 13840.3 10530.9 8474.9 7781.7 11172.7 9671.8 TRUE FALSE FALSE 7824.533966 10201.29635 9738.277474 10811.77162 12819.32864 10330.04063 8801.779732 8667.537273 10712.15658 9614.271703 0.813845729 1.061057631 1.012898093 1.124554408 1.333364506 1.074448585 0.915491054 0.901528222 1.114193244 1 13.23096186 -7.186991164 9.733123609 0.912126425 1.066756483 0.013098846 0.136309083 0.590492603 74.62837936 0.023035283 0.028220825 6.50E-08 7.186991164 0.154630058 VEEPSQCLASGTAISELIIEDNNAS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 2 VEEPSQCLASGTAISELIIEDNNASPQK 28 0 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 VEEPSQCLASGTAISELIIEDNNAS(1)PQK;VEEPSQCLASGTAISELIIEDNNAS(1)PQK ; 124.96 8.25E-14 27437000 7827.7 3961.8 3932.7 4030.6 4652.6 5164.6 4260.1 3081.5 5387.4 4288.4 TRUE FALSE FALSE 6910.148872 4083.858362 4145.313658 4194.98529 4309.386967 5066.09386 4424.413484 3432.285504 5165.329092 4262.892406 1.621000066 0.958001745 0.972418082 0.984070178 1.010906811 1.188417013 1.03789002 0.805154148 1.211695863 1 12.05761693 -7.186445925 24.99940058 1.2932541 1.002471821 0.376288599 0.166770084 139.3449228 46450.79002 0.040187424 0.04921934 6.51E-08 7.186445925 -0.290782279 ITVNGDSSAEAEELANEI ddPTM_HeLa_CUDC101_4h_R1 2 ITVNGDSSAEAEELANEI 18 0 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 NAA15 "N-alpha-acetyltransferase 15, NatA auxiliary subunit" 0 0 ; ; 160.84 0.00013822 12044300 9327 7240.1 6544.7 6412.6 7260.3 6830.6 6942 5863.1 7503.7 7928 FALSE FALSE TRUE 8233.703199 7463.158899 6898.526279 6674.133546 6724.722134 6700.317686 7209.755265 6530.531605 7194.39431 7880.843903 1.044774303 0.946999965 0.875353752 0.846880566 0.85329975 0.850203071 0.914845587 0.828658921 0.912896436 1 12.94413441 -6.938074219 2.672493696 1.020979843 0.861408185 0.624471799 0.041647345 0.060014291 0.871411804 0.004387383 0.005827345 1.15E-07 6.938074219 -0.159571658 SPSEGQTATTS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 SPSEGQTATTSPR 13 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 SPSEGQTAT(0.008)T(0.14)S(0.852)PR;SPSEGQTAT(0.005)T(0.091)S(0.904)PR;SPSEGQTATT(0.017)S(0.983)PR ;; 131.08 0.0010622 49034000 8737.2 7936.7 8093 7871.2 9342.9 7955.9 7758.4 7526.9 8305.2 7919.1 TRUE FALSE FALSE 7713.038661 8181.22032 8530.53206 8192.221558 8653.692881 7804.154463 8057.644087 8383.731871 7962.856141 7871.996841 0.979807134 1.039281454 1.083655422 1.040678969 1.099300858 0.991381808 1.023583247 1.065007017 1.01154209 1 12.94251393 -7.1850242 5.29952738 0.99049677 1.049259582 0.390370182 0.029507715 0.142451074 7.214131068 0.00478667 0.005867053 6.53E-08 7.1850242 0.058762812 INS(ph)VEQNDMLR ddPTM_HeLa_CUDC101_4h_R1 2 INSVEQNDMLR 11 0 A0A087WXD1;Q96T83 A0A087WXD1 SLC9A7 Sodium/hydrogen exchanger;Sodium/hydrogen exchanger 7 1 0 INS(1)VEQNDMLR;INS(1)VEQNDMLR ; 88.134 0.017655 83240000 4214.7 3290 3042.4 3380.6 3643.4 3487.3 3359.3 2856.8 3174.9 3517.4 TRUE FALSE FALSE 3720.659255 3391.361 3206.881347 3518.47548 3374.633641 3420.785563 3488.869326 3182.006564 3044.029278 3496.478348 1.0641162 0.969936222 0.917174662 1.006291225 0.965152163 0.978351708 0.997823804 0.910060423 0.870598635 1 11.77168686 -7.182793685 8.03269582 1.030244142 0.965171648 0 0.059862724 0.226286972 21.1367917 0.005884227 0.007211531 6.56E-08 7.182793685 -0.065072494 ITVTSEVPFSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 ITVTSEVPFSKR 12 1 P35268;K7ERI7;K7EP65;K7EKS7;K7ELC4;K7EMH1 P35268 RPL22 60S ribosomal protein L22 0 1 ; ITVTSEVPFSK(1)R;ITVTSEVPFSK(1)R 130.01 0.00061427 1161370 199.78 68.125 267.52 0 225.89 358.19 615.22 510.1 388.11 256.94 FALSE TRUE FALSE 176.3620912 70.2238505 281.9829404 0 209.2265447 351.3581225 638.9492415 568.1677221 372.1119415 255.4117095 0.690501198 0.274943739 1.10403294 0 0.81917366 1.375653933 2.501644278 2.224517127 1.456910266 1 7.996680857 -4.947004824 2.872274267 0.760166014 2.376151058 0.720416116 0.394262226 0.08502517 1.40562919 0.047686102 0.169669806 1.13E-05 4.947004824 1.615985045 IVAAK(ac)YEVIHSK ddPTM_HeLa_CUDC101_4h_R1 2 IVAAKYEVIHSK 12 1 Q92576-2;Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576-2 PHF3 PHD finger protein 3 0 1 ; IVAAK(1)YEVIHSK;IVAAK(1)YEVIHSK 96.756 0.015839 1267870 748.07 854.94 599.17 797.86 690.05 666.24 827.51 339.892 701.33 827.16 FALSE TRUE FALSE 660.3823686 881.279688 631.5629426 830.4001794 639.1463863 653.532582 859.4273379 378.5839314 672.4208806 822.2400155 0.803150365 1.071803453 0.76810047 1.009924309 0.777323378 0.794819724 1.045226846 0.460429953 0.817791482 1 9.683415774 -4.249904152 24.67060671 0.904671207 0.460429636 0.565354326 0.115171978 802.4413174 1716158.515 0.015404649 0.324451813 5.62E-05 4.249904152 -0.444241571 IVADK(ac)DYSVTANSK ddPTM_HeLa_CUDC101_4h_R1 2 IVADKDYSVTANSK 14 1 A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50;F5H793;C9J7H8 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase 0 1 ; IVADK(1)DYSVTANSK;IVADK(1)DYSVTANSK 331.3 1.07E-143 7701000 4325.4 1766.66 1597.54 1386.03 3720.7 3103.11 3486.6 3278 3461.3 2398.39 FALSE TRUE FALSE 3818.383169 1821.088701 1683.907845 1442.558294 3446.231374 3043.923347 3621.07933 3651.15427 3318.623749 2384.12427 1.601587307 0.763839672 0.706300366 0.605068416 1.445491503 1.276746932 1.518829944 1.531444613 1.391967605 1 11.21924372 IVADKDYSVTANSK ddPTM_HeLa_CUDC101_4h_R1 2 IVADKDYSVTANSK 14 1 A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50;F5H793;C9J7H8 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase 0 0 ; ; 154.23 0.0014025 6019000 3701.4 3050 3119 3234.1 3213.5 3184.4 2728 3135.3 3032.2 2939.1 FALSE FALSE TRUE 3267.527503 3143.966885 3287.622574 3366.000577 2976.446507 3123.662876 2833.219874 3492.209879 2907.211433 2921.618102 1.118396515 1.07610467 1.125274577 1.152101493 1.018766452 1.069155094 0.969743401 1.195299918 0.995068941 1 11.51255189 -9.416231104 1.117667548 0.999496944 1.088928072 0.268521465 0.061094609 0.591453657 1.309578696 0.04146761 0.010240988 3.84E-10 9.416231104 0.089431127 DGDKS(ph)PMSSLQISNEK ddPTM_HeLa_CUDC101_4h_R1 2 DGDKSPMSSLQISNEK 16 1 Q9UER7-3;Q9UER7;Q9UER7-2;Q9UER7-5;Q9UER7-4 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 DGDKS(0.998)PMS(0.002)SLQISNEK;DGDKS(0.875)PMS(0.098)S(0.027)LQISNEK ; 165.66 0.00010439 17253000 5661.5 4511.6 4064.7 4122.4 4438.7 4752.4 4353.7 3710.7 4995.7 5252.8 TRUE FALSE FALSE 4997.867552 4650.597048 4284.449977 4290.529291 4111.265944 4661.755888 4521.623667 4133.111089 4789.775132 5221.556112 0.957160556 0.890653466 0.820531253 0.821695525 0.787364122 0.892790538 0.865953285 0.791547769 0.917307988 1 12.3502641 -7.182664363 1.716708228 0.983636877 0.83147752 0.6936017 0.03723869 0.103082123 0.578533525 0.006032219 0.007376339 6.57E-08 7.182664363 -0.152159357 IVALDRDFHVHCYR ddPTM_HeLa_CUDC101_4h_R1 1 IVALDRDFHVHCYR 14 1 A0A087WZF1;Q93052 A0A087WZF1 LPP Lipoma-preferred partner 0 0 67.252 0.019446 8347200 685.28 605.18 716.86 672.02 733.7 709.02 686.96 747.58 596.12 364.78 FALSE FALSE TRUE 604.9525172 623.8248785 755.61562 699.4278803 679.5764127 695.4966248 713.4562773 832.6814854 571.5476813 362.6102723 1.668327026 1.72037288 2.083822985 1.92886946 1.874123445 1.918027916 1.967556718 2.296353824 1.576203778 1 8.502275985 -8.915458238 0.261796269 0.56422302 2.159946443 0.584177941 0.214324572 0.790650238 0.092571801 0.421713792 0.107745297 1.21E-09 8.915458238 1.595723422 IVDQIRPDR ddPTM_HeLa_CUDC101_4h_R1 2 IVDQIRPDR 9 1 P17844-2;P17844;J3KTA4;J3QSF1;J3KRZ1;A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 P17844-2;A0A1X7SBZ2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 0 0 ; ; 99.442 0.022723 13122000 5452.9 4810.1 5275.9 5288.7 5272.6 5108.9 4853.3 4921.2 5423.2 5514.8 FALSE FALSE TRUE 4813.719328 4958.29348 5561.131113 5504.396046 4883.650802 5011.456245 5040.493407 5481.409516 5199.653401 5481.997724 0.878095827 0.904468358 1.014435137 1.004085795 0.890852395 0.914166057 0.919462878 0.999892702 0.948496089 1 12.42048601 IVDRIDNDGDGFVTTEELK ddPTM_HeLa_CUDC101_4h_R1 2 IVDRIDNDGDGFVTTEELK 19 1 Q15293;Q15293-2 Q15293 RCN1 Reticulocalbin-1 0 0 ; ; 193.41 1.14E-16 22289400 2937 3442.7 3264.2 2918.7 4072 3550.5 3449.1 4214.4 3758.3 3006.4 FALSE FALSE TRUE 2592.729312 3548.765506 3440.672526 3037.737202 3771.616673 3482.780128 3582.132942 4694.150261 3603.381283 2988.517799 0.867563617 1.187466746 1.151297318 1.016469503 1.262035874 1.165387112 1.198631958 1.570728561 1.205741952 1 11.54521442 -1 0.297538093 0.937578467 5.65078696 0.438327805 0.133057957 20.45634504 0.261678105 0.044227975 51.88392821 0.1 1 4.713208493 SVST(ph)PSEAGSQDSGDGAVGSR ddPTM_HeLa_CUDC101_4h_R1 2 SVSTPSEAGSQDSGDGAVGSR 21 0 E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E9PGG1;E7ETL8;E7ESD3;E7EMU4;Q13409;Q13409-7;Q13409-5;E7ET01;E7ERR6;E7EUM4;E7ERH4 E7EQL5 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 0 S(0.001)VS(0.094)T(0.897)PS(0.007)EAGSQDSGDGAVGSR;S(0.146)VS(0.108)T(0.664)PS(0.081)EAGS(0.001)QDSGDGAVGSR ; 187.39 1.08E-12 32111000 2309.42 1776.22 1568.03 1706.84 2198.11 1834.33 1899.09 1368.11 2168.99 1944.43 TRUE FALSE FALSE 2038.713288 1830.943233 1652.802445 1776.452313 2035.959805 1799.343211 1972.338537 1523.850112 2079.583314 1932.864444 1.054762684 0.947269344 0.855105204 0.919077548 1.053338123 0.93092054 1.020422588 0.788389541 1.075907481 1 10.91652475 -7.182239996 6.30103346 1.025782342 0.934935863 0.324926974 0.073170398 0.239146906 15.5892462 0.011572511 0.014189607 6.57E-08 7.182239996 -0.090846479 IVEDEPNKICEADR ddPTM_HeLa_CUDC101_4h_R1 2 IVEDEPNKICEADR 14 1 P55060-4;P55060-3;P55060;P55060-2 P55060-4 CSE1L Exportin-2 0 0 ; ; 115.57 0.0027683 31497000 2743.6 1797.9 1882.89 2268.46 2480.6 2604.9 2317.9 2151.52 2014.22 1576.41 FALSE FALSE TRUE 2421.999367 1853.291168 1984.684729 2360.977604 2297.61108 2555.215873 2407.302179 2396.44034 1931.192999 1567.033443 1.545595199 1.18267493 1.26652353 1.506654254 1.466217004 1.630607109 1.536216212 1.529284745 1.232387865 1 10.61382025 -11.55813417 0.276238009 1.57E-13 1.521036232 0.480177089 0.140077407 7.938309071 0.275658473 4.623550574 0.072455841 2.77E-12 11.55813417 1.521036232 GQVS(ph)ESEDSITK ddPTM_HeLa_CUDC101_4h_R1 2 GQVSESEDSITK 12 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 GQVS(0.979)ES(0.004)EDS(0.016)ITK;GQVS(0.86)ES(0.138)EDS(0.002)ITK ; 130.24 0.0016339 30764000 2930 2489.8 1795.23 2135.78 2476.7 2106.79 2145.4 1598.45 2815.35 2865.64 TRUE FALSE FALSE 2586.549842 2566.507787 1892.285564 2222.88634 2293.998775 2066.606491 2228.148797 1780.411087 2699.300081 2848.595046 0.908008966 0.900973198 0.664287318 0.780344803 0.805308841 0.725482723 0.78219219 0.625013755 0.947589966 1 11.47603483 -7.182160376 0.618478668 0.985755497 0.720139787 0.705107483 0.063567979 0.247673104 0.206143763 0.018300125 0.023097756 6.57E-08 7.182160376 -0.265615709 IVEMSTSK(ac)TGK ddPTM_HeLa_CUDC101_4h_R1 8 IVEMSTSKTGK 11 1 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 I3L397 EIF5A;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2 0 1 ;;;;;;; IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK;IVEMSTSK(1)TGK 225.22 6.22E-20 326286100 18372.327 19326.14 18789.11 18535.38 21851.41 14594.57 28234.69 13942.81 15579.52 16375.34 FALSE TRUE FALSE 16218.75068 19921.55547 19804.90612 19291.33291 20239.47502 14316.20289 29323.71145 15530.00313 14937.32559 16277.93875 0.996363909 1.223837721 1.216671621 1.18512136 1.243368422 0.879484996 1.801438862 0.954052191 0.917642327 1 13.9906304 -7.260986077 22.15710074 0.998282942 1.224538901 0.185735906 0.230980311 9.899622723 483862.4083 0.034732241 0.041163185 5.48E-08 7.260986077 0.226255959 IVENEK(ac)INAEK ddPTM_HeLa_CUDC101_4h_R1 2 IVENEKINAEK 11 1 Q9C005 Q9C005 DPY30 Protein dpy-30 homolog 0 1 ; IVENEK(1)INAEK;IVENEK(1)INAEK 240 2.58E-28 4346900 1961.76 1679.72 2001.1 1750.22 1972.73 1766.27 1939.52 1967.77 1807.99 2100.7 FALSE TRUE FALSE 1731.805467 1731.470182 2109.285519 1821.601537 1827.205638 1732.581343 2014.327936 2191.772983 1733.463887 2088.204943 0.829327348 0.829166787 1.01009507 0.872328908 0.875012601 0.829698899 0.964621764 1.049596684 0.830121532 1 11.02804759 -4.447359731 4.048490979 0.906182671 1.042212025 0.340307665 0.067513484 0.25620002 7.478760631 0.01087899 0.069897456 3.57E-05 4.447359731 0.136029354 GVSMS(ph)LPSS(ph)PLLPR ddPTM_HeLa_CUDC101_4h_R1 3 GVSMSLPSSPLLPR 14 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 2 0 GVS(0.02)MS(0.965)LPS(0.297)S(0.718)PLLPR;GVS(0.013)MS(0.924)LPS(0.332)S(0.731)PLLPR;GVS(0.01)MS(0.989)LPS(0.082)S(0.919)PLLPR ;; 138.31 0.0055674 55841000 18225.8 12943.9 13117.2 12370.9 15679.2 15151.4 15158.1 10698 13830.9 13578.8 TRUE FALSE FALSE 16089.39935 13342.68622 13826.35551 12875.43877 14522.57665 14862.41229 15742.75299 11915.81708 13260.78445 13498.03269 1.191981063 0.988491176 1.024323753 0.95387521 1.075903206 1.101079885 1.166299812 0.882781761 0.982423495 1 13.72046153 -7.181502885 24.9999999 1.090664703 1.034605702 0 0.092449571 239.4051094 74871.79517 0.01659437 0.020323869 6.58E-08 7.181502885 -0.056059001 CGGVEQASSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 CGGVEQASSSPR 12 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 CGGVEQAS(0.023)S(0.103)S(0.875)PR;CGGVEQAS(0.01)S(0.117)S(0.873)PR;CGGVEQASS(0.003)S(0.997)PR;CGGVEQASS(0.008)S(0.992)PR ;;; 148.13 0.00077611 229973000 26147.1 25899.2 32903.3 34272.9 30048.1 30986 27209.3 24197.5 31031.4 20299.2 TRUE FALSE FALSE 23082.17657 26697.12365 34682.15193 35670.697 27831.51153 30394.99368 28258.77182 26952.04559 29752.27256 20178.45946 1.143901824 1.323050638 1.718771049 1.767761165 1.379268402 1.50630893 1.400442481 1.335684007 1.474457087 1 14.30052841 -7.181324145 2.49734231 1.061990194 1.51671585 0.277154052 0.188111483 0.126287674 1.514591708 0.025888257 0.031612288 6.59E-08 7.181324145 0.454725656 FS(ph)PTMGR ddPTM_HeLa_CUDC101_4h_R1 2 FSPTMGR 7 0 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 FS(0.643)PT(0.357)MGR;FS(0.63)PT(0.37)MGR ; 104.01 0.017259 506730000 11795.9 8294.4 7807.2 8503.3 8336.1 8812.1 8213.7 7086.3 8365.7 9601.6 TRUE FALSE FALSE 10413.20248 8549.940633 8229.280847 8850.101328 7721.162511 8644.023874 8530.50516 7892.975748 8020.862305 9544.489256 1.091017257 0.895798654 0.862202327 0.927247241 0.808965499 0.905655991 0.893762351 0.826966801 0.840365795 1 13.22045228 -7.180997286 5.743533273 1.042840779 0.874105541 0.143978948 0.074967677 0.079511252 4.428693337 0.007480063 0.009173264 6.59E-08 7.180997286 -0.168735238 GAAS(ph)PVLQEDHCDSLPSVLQVEEK ddPTM_HeLa_CUDC101_4h_R1 2 GAASPVLQEDHCDSLPSVLQVEEK 24 0 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 0 GAAS(0.988)PVLQEDHCDS(0.011)LPSVLQVEEK;GAAS(1)PVLQEDHCDSLPSVLQVEEK ; 104.65 1.97E-06 73324000 4102.9 2895 2566.1 2521.9 3254.7 3249.1 2720.6 2750.9 3500.5 3359.8 TRUE FALSE FALSE 3621.964282 2984.191519 2704.831128 2624.753983 3014.607265 3187.128831 2825.534453 3064.051336 3356.207908 3339.81576 1.084480265 0.893519803 0.809874353 0.785897837 0.902626816 0.954282829 0.846015067 0.917431247 1.0049081 1 11.7055528 -7.180867924 5.671186892 1.039752433 0.868960152 0.658907013 0.051723187 0.100258811 5.467085113 0.009585894 0.011755959 6.59E-08 7.180867924 -0.170792281 IVFSVK(ac)EK ddPTM_HeLa_CUDC101_4h_R1 1 IVFSVKEK 8 1 Q9Y5B6-3;Q9Y5B6-4;Q9Y5B6-2;Q9Y5B6 Q9Y5B6-3 PAXBP1 PAX3- and PAX7-binding protein 1 0 1 IVFSVK(1)EK 101.64 0.019174 0 211.58 108.81 61.693 139.64 113.64 150.61 111.93 0 0 0 FALSE TRUE FALSE 186.7789131 112.1623071 65.02831019 145.3351228 105.2570036 147.7373652 116.2471776 0 0 0 0 IVGELEQMVSEDVPLDHR ddPTM_HeLa_CUDC101_4h_R1 4 IVGELEQMVSEDVPLDHR 18 0 Q00341;Q00341-2;A0A024R4E5 Q00341 HDLBP Vigilin 0 0 ;;; ;;; 147.37 0.0042075 47270100 4884.17 4715.06 4463.19 4181.74 5077.72 4678.03 4208.03 4079.02 5107.34 5012.94 FALSE FALSE TRUE 4311.654997 4860.32541 4704.483552 4352.289432 4703.146712 4588.804372 4370.335127 4543.359149 4896.813283 4983.12281 0.865251602 0.97535734 0.944083405 0.873406014 0.943815132 0.920869211 0.877027377 0.911749383 0.982679631 1 12.28283441 -9.535004961 1.265417373 1.000521963 0.90957849 0.452303561 0.033700281 0.322445345 0.916038024 0.025498647 0.005934392 2.92E-10 9.535004961 -0.090943473 IVIGYQSHADTATK ddPTM_HeLa_CUDC101_4h_R1 2 IVIGYQSHADTATK 14 0 D6RBW1;P06730;P06730-3;P06730-2 D6RBW1 EIF4E Eukaryotic translation initiation factor 4E 0 0 ; ; 108.66 0.0046983 3448900 3653.7 2882.6 2546.6 2901.3 3266 3205.8 2748.1 3155 3196.3 2692.6 FALSE FALSE TRUE 3225.418825 2971.409489 2684.276899 3019.627554 3025.073687 3144.654706 2854.095138 3514.152447 3064.547161 2676.584295 1.205050344 1.110149788 1.002874037 1.128164564 1.130199296 1.174876021 1.066319915 1.312924257 1.144947001 1 11.38617737 -9.50716921 1.226744528 0.999158698 1.141501062 0 0.089373805 0.457206416 1.219825063 0.055162638 0.01300858 3.11E-10 9.50716921 0.142342364 IVILEYQPSK ddPTM_HeLa_CUDC101_4h_R1 1 IVILEYQPSK 10 0 Q15393;J3QRB2;J3QL37;Q15393-2 Q15393 SF3B3 Splicing factor 3B subunit 3 0 0 125.97 0.025151 530550 489.73 565.35 423.79 385.99 401.65 579.09 474.37 420.61 538.88 389.43 FALSE FALSE TRUE 432.3245918 582.7677634 446.7013693 401.7323406 372.0210797 568.0448231 492.6666098 468.4905422 516.6671383 387.113653 1.116789833 1.505417747 1.153928222 1.037763296 0.961012552 1.467385143 1.272666582 1.210214464 1.334665244 1 8.59661338 -7.66605503 3.083915563 1.04400086 1.223812258 0 0.184547059 0.280346867 5.624085236 0.031120455 0.032055077 2.16E-08 7.66605503 0.179811398 IVITGDGDIDHDQALAQAIR ddPTM_HeLa_CUDC101_4h_R1 2 IVITGDGDIDHDQALAQAIR 20 0 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;E9PII3;Q6R5J7;E9PPC9;Q6ZSX4 O43491 EPB41L2 Band 4.1-like protein 2 0 0 ; ; 106.87 0.00018447 8950400 1918.14 1542.32 1581.32 1672.28 1681.75 1647.42 1572.03 1566.2 2236.72 2074.02 FALSE FALSE TRUE 1693.298537 1589.837051 1666.810942 1740.482807 1557.690653 1615.998208 1632.663724 1744.489877 2144.521455 2061.683637 0.821318318 0.77113531 0.808470763 0.844204598 0.755543006 0.78382453 0.79190798 0.84614819 1.040179694 1 11.00960725 -8.965592486 0.595705818 1.01659044 0.796198305 0.87817115 0.031993997 0.242125448 0.145464509 0.027848512 0.00692735 1.08E-09 8.965592486 -0.220392135 AS(ph)PSTAGETPSGVK ddPTM_HeLa_CUDC101_4h_R1 1 ASPSTAGETPSGVK 14 0 A0A087WW69;F8W8L6;A0A087WTA5;E7ERK9;Q9UI10-3;Q9UI10;Q9UI10-2 A0A087WW69 EIF2B4 Translation initiation factor eIF-2B subunit delta 1 0 AS(0.999)PSTAGETPSGVK 165.78 1.54E-05 22158000 2458.8 1793.8 1851.9 1750.1 1492.3 1992.5 1640.7 1295.2 1816.7 2460.4 TRUE FALSE FALSE 2170.583191 1849.064852 1952.019316 1821.476643 1382.216002 1954.496382 1703.982349 1442.640333 1741.814857 2445.765431 0.88748625 0.756027061 0.798122048 0.744747071 0.565146594 0.799134846 0.696707185 0.589852287 0.712175761 1 11.25607033 -7.180847434 0.478736117 0.995360705 0.650468723 0.208290999 0.10899035 0.275705677 0.152683533 0.026428704 0.033438665 6.59E-08 7.180847434 -0.344891981 SALVTSSSS(ph)LPSFPSTLSWSR ddPTM_HeLa_CUDC101_4h_R1 1 SALVTSSSSLPSFPSTLSWSR 21 0 F8VXI9;Q14161-6;Q14161-4;Q14161-3;Q14161 F8VXI9 GIT2 ARF GTPase-activating protein GIT2 1 0 SALVTSSS(0.047)S(0.952)LPSFPSTLSWSR 138.05 6.36E-07 7221400 804.6 888.81 1026.3 1010.1 999.65 930.55 858.16 691.24 541.69 809.83 TRUE FALSE FALSE 710.2860077 916.1931826 1081.784882 1051.296244 925.9078111 912.8013092 891.2595187 769.9279675 519.3613089 805.0130951 0.882328514 1.138109663 1.343810292 1.305936823 1.150177328 1.133896224 1.107136671 0.956416699 0.645158833 1 9.652868442 -7.18043121 5.888819409 0.94463649 1.172708966 0.48149846 0.140467672 0.151246021 8.712144146 0.019031972 0.023340806 6.60E-08 7.18043121 0.228072477 RDS(ph)LTGSSDLYKR ddPTM_HeLa_CUDC101_4h_R1 1 RDSLTGSSDLYKR 13 2 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;E9PR38;Q14671-4;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 RDS(0.996)LT(0.004)GSSDLYKR 63.966 0.027971 18506000 1903 2173.2 2059.6 2171.7 2410.9 2431 2052.4 2361.7 2095.1 2000.4 TRUE FALSE FALSE 1679.933225 2240.153716 2170.948206 2260.271313 2233.05271 2384.632725 2131.561756 2630.546382 2008.739091 1988.501532 0.844823702 1.126553679 1.091750834 1.136670642 1.122982645 1.199210907 1.071943733 1.32287873 1.010177291 1 10.95746596 -7.179943996 6.277514938 0.926908081 1.148972415 0.573346715 0.078816973 0.115247253 7.284487091 0.013640308 0.016727536 6.61E-08 7.179943996 0.222064334 NS(ph)PNNISGISNPPGT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 NSPNNISGISNPPGTPR 17 0 Q9NW25;Q9BWW4-2;Q9BWW4-3;Q9BWW4;A0A087WVT6 Q9NW25 SSBP3 Single-stranded DNA-binding protein 3 2 0 NS(0.911)PNNIS(0.002)GIS(0.088)NPPGT(1)PR 226.51 1.92E-32 7443400 2505.8 1814.1 1615.3 1638.9 1937.7 1811.4 1793.2 1733 2208 2154.9 TRUE FALSE FALSE 2212.073923 1869.990271 1702.628004 1705.741426 1794.759731 1776.850563 1862.364325 1930.277715 2116.985305 2142.082559 1.032674447 0.872977684 0.794847051 0.796300506 0.837857404 0.82949677 0.869417622 0.901121998 0.988283713 1 11.06479837 -7.177911495 4.332513571 1.015484172 0.837310211 0.847066458 0.032037247 0.057075152 1.965125388 0.005674962 0.006958456 6.64E-08 7.177911495 -0.178173961 EELMS(ph)SDLEETAGSTSIPKR ddPTM_HeLa_CUDC101_4h_R1 1 EELMSSDLEETAGSTSIPKR 20 1 O00567 O00567 NOP56 Nucleolar protein 56 1 0 EELMS(0.5)S(0.5)DLEETAGSTSIPKR 113.59 5.21E-05 25677000 674.99 608.01 746.77 786.35 880.25 763.87 653.47 765.56 844.66 493.2 TRUE FALSE FALSE 595.8686954 626.7420674 787.1426451 818.4207519 815.3157112 749.3004524 678.6745568 852.7082559 809.8427573 490.2664245 1.215397722 1.278370364 1.605540591 1.669338774 1.6630054 1.528353595 1.384297441 1.739275246 1.651842176 1 8.937422153 -7.177550875 1.085158729 1.071163776 1.598123829 0.159605875 0.211842599 0.142249922 0.326285665 0.024042524 0.029754418 6.64E-08 7.177550875 0.526960053 SKT(ph)PSS(ph)PCPASK ddPTM_HeLa_CUDC101_4h_R1 1 SKTPSSPCPASK 12 1 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 2 0 S(0.015)KT(0.982)PS(0.046)S(0.956)PCPASK 143.56 0.0097598 10512000 3610.3 2433.7 2892 3490.9 3118.5 2437.8 2073.2 973.93 4164.2 3199.4 TRUE FALSE FALSE 3187.106107 2508.679412 3048.350268 3633.273991 2888.454468 2391.303027 2153.164018 1084.798254 3992.549913 3180.369827 1.002118081 0.788801161 0.958489243 1.142406132 0.908213392 0.75189464 0.677016868 0.341091858 1.255372844 1 11.63497882 -4.26586087 0.911192458 0.990277291 7.29E-16 0.752237089 0.122160671 0.598149658 0.369438072 0.014092424 0.586299997 5.42E-05 4.26586087 -0.990277291 down IVQK(ac)HPHTGDTKEEK ddPTM_HeLa_CUDC101_4h_R1 1 IVQKHPHTGDTKEEK 15 2 P51397;B4DQ75 P51397 DAP Death-associated protein 1 0 1 IVQK(1)HPHTGDTKEEK 148.18 0.0037523 785620 246.4 65.628 334.16 319.66 369.59 135.34 232.17 276.78 0 131.02 FALSE TRUE FALSE 217.5173655 67.64992089 352.2257004 332.6971165 342.326082 132.758615 241.1248747 308.2875164 0 130.2406872 1.67011838 0.519422328 2.70442139 2.554479123 2.628411208 1.019332882 1.851379011 2.367059964 0 1 7.025036407 -6.753601349 24.99999603 1.265509933 2.155856896 0.45464922 0.671155632 147.7500825 471258.4443 0.091098852 0.127482099 1.76E-07 6.753601349 0.890346963 EIEMS(ph)VDDDDINSSK ddPTM_HeLa_CUDC101_4h_R1 1 EIEMSVDDDDINSSK 15 0 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 EIEMS(1)VDDDDINSSK 241.39 6.93E-44 14080000 2002.6 1283.6 1144.3 1217.8 1632.2 1280.2 1226.2 861.78 1635.1 1593 TRUE FALSE FALSE 1767.858264 1323.146195 1206.164319 1267.467148 1511.795858 1255.782318 1273.494945 959.8815518 1567.700486 1583.524765 1.116407083 0.835570257 0.761695899 0.800408794 0.954703009 0.793029794 0.804215364 0.606167692 0.990006927 1 10.62892371 -7.177054695 5.305119144 1.054762563 0.796871913 0.622639559 0.086147859 0.101795144 4.842491388 0.014842712 0.018210053 6.65E-08 7.177054695 -0.257890651 TPASTPVSGT(ph)PQAS(ph)PMIER ddPTM_HeLa_CUDC101_4h_R1 3 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 2 0 T(0.002)PAS(0.002)T(0.005)PVS(0.178)GT(0.814)PQAS(1)PMIER;TPAS(0.008)T(0.043)PVS(0.255)GT(0.826)PQAS(0.868)PMIER;TPAS(0.001)T(0.005)PVS(0.057)GT(0.937)PQAS(1)PMIER ;; 157.88 6.57E-05 44121000 3990 3377.12 3335.74 3169.85 3849.3 3079.74 3163.13 3006.91 3621.2 3789.1 TRUE FALSE FALSE 3522.298248 3481.165064 3516.080194 3299.130184 3565.344808 3020.999091 3285.132984 3349.20448 3471.932603 3766.562265 0.935149349 0.924228732 0.933498492 0.875899548 0.946577956 0.802057388 0.872183374 0.889193977 0.921777568 1 11.87903266 -7.176986675 0.200533544 1.034231022 0.820348404 0.353132642 0.040726462 1.199262469 0.214673746 0.087888339 0.102937859 6.65E-08 7.176986675 -0.213882618 QNGSNDSDRY(ph)SDNEEGK ddPTM_HeLa_CUDC101_4h_R1 1 QNGSNDSDRYSDNEEGK 17 1 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 QNGS(0.003)NDS(0.023)DRY(0.756)S(0.218)DNEEGK 86.411 0.01704 58060000 3408.9 2609.6 2480.8 2562.8 2293.1 2917.6 2297.5 2352 3285.9 3169.1 TRUE FALSE FALSE 3009.31391 2689.998683 2614.919552 2667.322061 2123.942581 2861.951641 2386.115345 2619.742173 3150.453811 3150.250052 0.955261919 0.853900052 0.830067299 0.846701696 0.674213966 0.90848396 0.757436808 0.831598168 1.00006468 1 11.62125063 -7.174943918 1.194373866 0.986362407 0.800065236 0.655724974 0.057866336 0.172550477 0.475685562 0.010676315 0.013188136 6.68E-08 7.174943918 -0.186297171 PGMY(ph)PDPHS(ph)PFAVSPIPGR ddPTM_HeLa_CUDC101_4h_R1 1 PGMYPDPHSPFAVSPIPGR 19 0 P41162 P41162 ETV3 ETS translocation variant 3 2 0 PGMY(0.602)PDPHS(0.902)PFAVS(0.496)PIPGR 55.972 0.03826 6906800 1967.6 2166.9 2539.3 1989.2 2311.7 2415.5 2575.7 1972.9 1922.2 1867.4 TRUE FALSE FALSE 1736.960911 2233.659621 2676.582239 2070.328174 2141.170497 2369.428362 2675.045612 2197.486961 1842.966102 1856.292622 0.935715032 1.203290685 1.441896718 1.115302701 1.153466038 1.276430415 1.441068924 1.183804178 0.992820895 1 10.85820844 -7.174617892 4.650252406 0.969723849 1.268186443 0.613203423 0.103750048 0.102963181 3.922470455 0.017313211 0.021246083 6.69E-08 7.174617892 0.298462594 IVSAQSLAEDDVE ddPTM_HeLa_CUDC101_4h_R1 4 IVSAQSLAEDDVE 13 0 Q15388 Q15388 TOMM20 Mitochondrial import receptor subunit TOM20 homolog 0 0 ;;; ;;; 222.28 6.43E-32 77876000 19849.3 17740.1 13084.3 15279.8 14366 13790.8 14159.8 12936.6 12099.4 15968.3 FALSE FALSE TRUE 17522.59514 18286.65145 13791.67684 15902.97629 13306.2488 13527.76347 14705.94823 14409.25025 11600.65761 15873.31984 1.103902354 1.15203698 0.868859002 1.00186832 0.838277621 0.852232778 0.926456997 0.907765382 0.730827434 1 13.95431627 -6.746894598 24.99903549 1.058158836 0.900237072 0.052081901 0.118167234 125.4515009 215620.8923 0.010202785 0.014391891 1.79E-07 6.746894598 -0.157921765 VLS(ph)PTAAKPSPFEGK ddPTM_HeLa_CUDC101_4h_R1 2 VLSPTAAKPSPFEGK 15 1 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 1 0 VLS(0.987)PT(0.013)AAKPSPFEGK;VLS(0.915)PT(0.085)AAKPSPFEGK ; 149.31 0.0011854 257300000 4523.4 4740.9 4877.9 4730.5 4936.1 4800.7 4881.6 4748 4310.3 4646.8 TRUE FALSE FALSE 3993.173909 4886.96151 5141.614029 4923.430237 4571.973737 4709.134646 5069.884947 5288.493128 4132.62761 4619.160627 0.864480418 1.057976092 1.113105701 1.065871191 0.989784532 1.019478435 1.097577105 1.144903491 0.894670687 1 12.173415 -7.174314667 7.74904359 0.936087274 1.067850835 0.621848265 0.053188684 0.192552375 15.37496961 0.010953054 0.013427111 6.69E-08 7.174314667 0.13176356 IVVNLTGR ddPTM_HeLa_CUDC101_4h_R1 1 IVVNLTGR 8 0 I3L3P7;I3L246;H3BN98;P62244 I3L3P7 RPS15A 40S ribosomal protein S15a 0 0 129.68 0.030992 1888200 1486.3 757.36 374 936.01 724.73 784.65 623.36 559.28 244.05 140.08 FALSE FALSE TRUE 1312.078167 780.6933639 394.2195713 974.1845336 671.2681118 769.6841086 647.403204 622.9461745 233.9901557 139.2467979 9.422681071 5.606544463 2.831085362 6.996100076 4.820707706 5.527481565 4.649322021 4.473684018 1.680398826 1 7.121500342 IWDDGDDFCIFSESR ddPTM_HeLa_CUDC101_4h_R1 2 IWDDGDDFCIFSESR 15 0 Q6P158;Q6P158-2 Q6P158 DHX57 Putative ATP-dependent RNA helicase DHX57 0 0 ; ; 207.88 1.11E-22 8508400 1455.72 1103.22 1303.12 1185.47 1557.76 1178.24 1622.53 1178.74 1297.35 1147.69 FALSE FALSE TRUE 1285.082708 1137.208901 1373.570609 1233.818591 1442.847148 1155.767035 1685.111526 1312.922997 1243.872684 1140.863489 1.126412337 0.996796647 1.203974553 1.081477848 1.264697453 1.013063391 1.477049219 1.150815159 1.090290553 1 10.15591046 -1 0.126386457 0.95685632 2.017866123 0.243000278 0.12170228 69.15181327 0.593726049 0.405419274 13.06729005 0.1 1 1.061009803 S(ph)PPLLES(ph)PDATR ddPTM_HeLa_CUDC101_4h_R1 1 SPPLLESPDATR 12 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 2 0 S(1)PPLLES(0.866)PDAT(0.134)R 123.95 0.00012138 0 1495.2 827.95 854.69 910.48 681.32 880.97 665.89 628.63 1095.5 1134.9 TRUE FALSE FALSE 1319.934923 853.4581581 900.8971267 947.6133098 631.060381 864.166965 691.5736004 700.1906982 1050.343026 1128.149564 1.16999994 0.756511535 0.798561782 0.839971348 0.559376523 0.766003899 0.613015882 0.62065414 0.931031717 1 10.13974263 -7.174219229 5.009926305 1.080002019 0.705226692 0.674057921 0.102675526 0.082078413 3.50509051 0.017402797 0.021358168 6.70E-08 7.174219229 -0.374775327 SPCGS(ph)PTGSPK ddPTM_HeLa_CUDC101_4h_R1 2 SPCGSPTGSPK 11 0 A0A2R8Y8D8;A0A2R8Y5E1;A0A2R8YFD4;Q13191-3;Q13191-2;Q13191 A0A2R8Y8D8 CBLB E3 ubiquitin-protein ligase CBL-B 1 0 SPCGS(0.578)PT(0.252)GS(0.169)PK;S(0.006)PCGS(0.779)PT(0.191)GS(0.024)PK ; 133.88 0.0017418 12285200 4066.2 3933.4 4491.7 4578.2 5246.5 4891 4989.7 4195 3804.7 2976.9 TRUE FALSE FALSE 3589.5662 4054.583392 4734.534889 4764.918785 4859.476148 4797.712324 5182.1544 4672.541843 3647.868656 2959.193266 1.213021887 1.370165118 1.599941086 1.610208714 1.642162478 1.621290633 1.75120512 1.57899178 1.232724032 1 11.53098821 -7.174214897 0.765280495 1.048775896 1.67381254 0.881243738 0.079528673 0.083020471 0.099742125 0.014919146 0.018778413 6.70E-08 7.174214897 0.625036644 IWDPVHR ddPTM_HeLa_CUDC101_4h_R1 2 IWDPVHR 7 0 A0A494C1B8;A0A494C0U1;Q5VZU9;P29144;A0A494C159;A0A494C1S4 A0A494C1B8 TPP2 Tripeptidyl-peptidase 2 0 0 ; ; 98.418 0.0024976 8582800 6511.3 5816 5421.6 5655.8 6104.3 5970 6254.1 5955 5454.2 5956.4 FALSE FALSE TRUE 5748.055284 5995.184066 5714.708095 5886.46797 5653.99795 5856.132197 6495.322732 6632.893129 5229.375567 5920.971068 0.970796043 1.012533924 0.965163996 0.99417273 0.954910586 0.989049284 1.097002951 1.120237382 0.883195595 1 12.53161809 -4.734580902 4.413998644 0.984531031 1.113886662 0.692267229 0.035909754 0.040772001 1.80187498 0.00235203 0.00903532 1.84E-05 4.734580902 0.129355631 IWEDLDDDDPK ddPTM_HeLa_CUDC101_4h_R1 2 IWEDLDDDDPK 11 0 O75717;C9JYB3 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 0 0 ; ; 133.81 0.0001277 9658600 3407.8 3142.9 3327.4 3236.5 2762.3 2726.5 2685.6 2498.7 3106.8 4573.3 FALSE FALSE TRUE 3008.34285 3239.729024 3507.289309 3368.498459 2558.530632 2674.496555 2789.184492 2783.141908 2978.736389 4546.097808 0.661741779 0.712639534 0.771494468 0.740964801 0.562797093 0.588305986 0.613533762 0.612204582 0.655229279 1 12.15041301 -13.52287875 0.185134862 2.538432351 0.576460647 0 0.122575642 15.34007673 0.178869277 8.487742885 0.07817099 3.00E-14 13.52287875 -1.961971704 KRPS(ph)LPSS(ph)PSPGLPK ddPTM_HeLa_CUDC101_4h_R1 1 KRPSLPSSPSPGLPK 15 2 O43294-2;O43294;H3BSN4;H3BQC4 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 2 0 KRPS(0.997)LPS(0.291)S(0.646)PS(0.066)PGLPK 96.435 0.021014 17697000 2301.9 1694 1511.7 1732 1597.8 1674.3 1704 1506.7 1944.5 2020.2 TRUE FALSE FALSE 2032.074771 1746.190132 1593.427075 1802.638446 1479.933477 1642.365517 1769.723851 1678.216638 1864.346887 2008.183761 1.011896825 0.869537025 0.793466766 0.897646163 0.736951222 0.81783627 0.881255932 0.83568878 0.928374646 1 10.97167558 -7.173736047 3.71977671 1.005930911 0.828493437 0.652615882 0.048696598 0.072512538 1.889333698 0.006834186 0.008380821 6.70E-08 7.173736047 -0.177437474 IWSTVPTDEEDEMEESTNRPR ddPTM_HeLa_CUDC101_4h_R1 1 IWSTVPTDEEDEMEESTNRPR 21 1 Q9GZL7 Q9GZL7 WDR12 Ribosome biogenesis protein WDR12 0 0 156.29 4.57E-07 9735900 877.61 753.04 799.76 763.84 987.15 933.45 708.15 992.42 1009.4 950.37 FALSE FALSE TRUE 774.7378862 776.2402698 842.9974447 794.9926968 914.3299112 915.6459965 735.4635827 1105.393081 967.7921048 944.717157 0.820073903 0.821664203 0.892327866 0.841513982 0.967834557 0.969227657 0.778501351 1.170078338 1.024425245 1 9.883738649 -4.24378516 24.2117587 0.901118458 1.170078683 0.496888168 0.081005035 1640.142619 2249308.496 0.011725975 0.46012854 5.70E-05 4.24378516 0.268960225 IWYEHR ddPTM_HeLa_CUDC101_4h_R1 2 IWYEHR 6 0 O75874;H0YL11;P48735-2;P48735 O75874 IDH1;IDH2 "Isocitrate dehydrogenase [NADP] cytoplasmic;Isocitrate dehydrogenase [NADP], mitochondrial" 0 0 ; ; 146.66 0.008599 64323000 7932.4 5931.2 5454.1 6496.9 5308.8 5452.7 5435 5494.7 5728.3 4642.7 FALSE FALSE TRUE 7002.576097 6113.933242 5748.965144 6761.871664 4917.180401 5348.698832 5644.629771 6120.194438 5492.177049 4615.085014 1.517323316 1.324771531 1.245689977 1.465167303 1.06545825 1.158959979 1.223082512 1.326128212 1.190048944 1 12.17214151 -2.871016292 14.42096351 1.25348004 42.12619945 0 0.154379911 0 0 0.027049908 0 0.00134581 2.871016292 40.87271941 VSVTPPEESQNS(ph)DTPPRPDR ddPTM_HeLa_CUDC101_4h_R1 1 VSVTPPEESQNSDTPPRPDR 20 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 VSVTPPEES(0.001)QNS(0.5)DT(0.5)PPRPDR 107.25 0.00010881 14724000 1654.8 1212 1280.9 854.62 1102 1186.3 1149 950.5 1532.6 1644.8 TRUE FALSE FALSE 1460.826853 1249.340283 1350.149329 889.4750976 1020.707655 1163.673304 1193.317315 1058.701078 1469.425579 1635.016656 0.893462979 0.764114713 0.825770993 0.544015924 0.624279668 0.711719541 0.72985025 0.647516999 0.898722085 1 10.67508962 -7.173236619 0.894520921 0.970427031 0.661065001 0.740225996 0.068343709 0.163746473 0.261208508 0.015198786 0.019000877 6.71E-08 7.173236619 -0.309362031 TTTPPPSQIPDPPFSS(ph)PITPHR ddPTM_HeLa_CUDC101_4h_R1 1 TTTPPPSQIPDPPFSSPITPHR 22 0 Q6ZS30-1;Q6ZS30 Q6ZS30-1 NBEAL1 Neurobeachin-like protein 1 1 0 TTTPPPSQIPDPPFS(0.259)S(0.634)PIT(0.107)PHR 69.71 0.0022333 14734000 3598.6 2729.3 2432.3 2898.8 2866.2 2694.5 3000 2071.5 3267 3078.6 TRUE FALSE FALSE 3176.777563 2813.386498 2563.797495 3017.025594 2654.766136 2643.106902 3115.711005 2307.311187 3132.332877 3060.28835 1.038064783 0.919320723 0.837763375 0.985863176 0.867488887 0.863679039 1.018110272 0.753952217 1.023541745 1 11.57945188 -7.172263284 4.867068912 1.017896381 0.895138766 0.414254201 0.070197472 0.153617892 6.203756723 0.010640685 0.013062443 6.73E-08 7.172263284 -0.122757615 IYASEEDD ddPTM_HeLa_CUDC101_4h_R1 3 IYASEEDD 8 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 0 0 ;; ;; 137.44 0.014326 30892400 11493 10633.6 9619.8 8747.2 9518.4 9907 9952 12166.5 10419.7 10458.6 FALSE FALSE TRUE 10145.80796 10961.20861 10139.87549 9103.948625 8816.246595 9718.040481 10335.85197 13551.48518 9990.195556 10396.39178 0.97589704 1.054328159 0.975326411 0.875683489 0.848010231 0.934751276 0.994176844 1.303479656 0.960929115 1 13.34379529 -4.263503448 4.625680148 0.97091602 1.32348526 0.761126042 0.057832496 0.077670573 4.41266769 0.008892405 0.088246237 5.45E-05 4.263503448 0.35256924 IYEDGDDDMK ddPTM_HeLa_CUDC101_4h_R1 2 IYEDGDDDMK 10 0 Q9HB71;Q9HB71-3 Q9HB71 CACYBP Calcyclin-binding protein 0 0 ; ; 162.88 0.00024104 21796000 6012.2 4417.8 4847.4 4567.9 4273.3 4485.8 4032.5 4037.3 5519.3 7603.8 FALSE FALSE TRUE 5307.45903 4553.907182 5109.465107 4754.198706 3958.067173 4400.240839 4188.034876 4496.889913 5291.792118 7558.572259 0.702177455 0.602482456 0.675982835 0.628981049 0.523652753 0.582152381 0.554077507 0.594939065 0.70010472 1 12.88389803 -8.788436734 0.349453135 1.104205726 0.549129441 0.401883631 0.098887091 0.298817413 0.063306663 0.065510114 0.01686459 1.63E-09 8.788436734 -0.555076285 IYEDGDDDMKR ddPTM_HeLa_CUDC101_4h_R1 2 IYEDGDDDMKR 11 1 Q9HB71;Q9HB71-3 Q9HB71 CACYBP Calcyclin-binding protein 0 0 ; ; 205.59 1.42E-16 172097000 5487.7 5295 5128.2 5186.5 5768.2 4609.07 4770.4 5354.6 5531.8 5549.5 FALSE FALSE TRUE 4844.440125 5458.132674 5405.446004 5398.027888 5342.691378 4521.159669 4954.395926 5964.14602 5303.776863 5516.491327 0.878174158 0.989421056 0.979870299 0.978525582 0.968494476 0.819571608 0.898106356 1.081148445 0.961440261 1 12.42953524 -4.250193213 24.22191399 0.940749767 1.081148573 0.365514125 0.055184323 1071.862407 2308501.784 0.008824262 0.177123099 5.62E-05 4.250193213 0.140398806 KGS(ph)ITEYTAAEEK ddPTM_HeLa_CUDC101_4h_R1 4 KGSITEYTAAEEK 13 1 J3KN59;Q12982;Q12982-2 J3KN59 BNIP2 BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 1 0 KGS(0.802)IT(0.189)EYT(0.009)AAEEK;KGS(0.614)IT(0.381)EYT(0.005)AAEEK;KGS(0.565)IT(0.399)EYT(0.036)AAEEK;KGS(0.949)IT(0.05)EYT(0.001)AAEEK ;;; 213.83 1.08E-23 512055000 23587.7 17283.1 18797.7 18659.5 18448.9 19271.8 17302.5 16110 18700.6 21510.9 TRUE FALSE FALSE 20822.78556 17815.57183 19813.96052 19420.51506 17087.9614 18904.22252 17969.86322 17943.89728 17929.75335 21382.95221 0.973803119 0.833167079 0.926624178 0.908224219 0.799139484 0.884079164 0.840382705 0.839168376 0.838506918 1 14.38417343 -7.171812997 0.71722471 0.998116631 0.847327947 0 0.063531401 0.229886521 0.246239903 0.009815111 0.012411119 6.73E-08 7.171812997 -0.150788683 IYEFPETDDEEENK ddPTM_HeLa_CUDC101_4h_R1 2 IYEFPETDDEEENK 14 0 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181 G3V1Q4 7-Sep Septin-7 0 0 ; ; 248.32 3.42E-55 27578000 3236.4 2101.67 2333.2 2131.44 1906.29 2308.26 2044.58 1782.45 2308.07 2910.1 FALSE FALSE TRUE 2857.034098 2166.419962 2459.33985 2218.369336 1765.666785 2264.233786 2123.440135 1985.356903 2212.930378 2892.790596 0.987639445 0.74890314 0.850161727 0.766861362 0.610367991 0.782716105 0.734045575 0.686312001 0.764981185 1 11.49824618 -7.071858566 1.150796144 1.001035751 0.718923944 0.314176485 0.096482068 0.130713343 0.336979078 0.011740635 0.015244031 8.48E-08 7.071858566 -0.282111806 IYGFYDECK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 IYGFYDECKR 10 1 P62136-3;P62136;P62136-2;F8VR82;F8VYE8;F8W0W8;P36873;P62140;P36873-2;E7ETD8;H0Y3Y6 P62136-3 PPP1CA;PPP1CC;PPP1CB Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit 0 1 ; IYGFYDECK(1)R;IYGFYDECK(1)R 138.4 0.0010398 930410 369.52 77.356 0 181.23 309.04 333.729 288.62 73.576 124.18 0 FALSE TRUE FALSE 326.2054258 79.73924667 0 188.6213427 286.2427349 327.3636754 299.7521701 81.95159444 119.0612478 0 0 YRS(ph)DIHTEAVQAALAK ddPTM_HeLa_CUDC101_4h_R1 1 YRSDIHTEAVQAALAK 16 1 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 0 Y(0.102)RS(0.722)DIHT(0.176)EAVQAALAK 111.63 0.00084367 44460000 4040.6 3052.4 2589.9 2826.6 3316.3 3053.3 3294 3016.4 2981.9 3390.5 TRUE FALSE FALSE 3566.966993 3146.440826 2729.917828 2941.880966 3071.663156 2995.06339 3421.050683 3359.774783 2858.98482 3370.333155 1.058342552 0.933569674 0.809984563 0.872875419 0.911382648 0.888654994 1.015048224 0.996867262 0.848279588 1 11.71867549 -7.17093046 5.719048713 1.027421775 0.913746611 0 0.080123366 0.166133619 8.422012864 0.010438498 0.012811397 6.75E-08 7.17093046 -0.113675164 SIDKDEEFAGS(ph)SPQSSK ddPTM_HeLa_CUDC101_4h_R1 1 SIDKDEEFAGSSPQSSK 17 1 Q9Y2M0;A0A590UJ38;H3BQ24;A0A590UJL5;Q9Y2M0-2 Q9Y2M0 FAN1 Fanconi-associated nuclease 1 1 0 SIDKDEEFAGS(0.459)S(0.314)PQS(0.095)S(0.133)K 65.105 0.020512 20553000 3631.8 2981.1 2883 2629.9 3124.9 3151.6 2972.6 2869.6 3362 3277.3 TRUE FALSE FALSE 3206.085909 3072.944158 3038.863701 2737.158689 2894.382353 3091.488481 3087.254178 3196.263665 3223.416937 3257.806474 0.984124114 0.943255587 0.93279442 0.840184557 0.888445147 0.94894786 0.947648119 0.981109127 0.98944396 1 11.66968519 -7.169456646 2.05079968 0.99366785 0.920347501 0.418957903 0.035907787 0.228624406 1.838045312 0.006927833 0.008501791 6.77E-08 7.169456646 -0.07332035 IYHPNIDEK ddPTM_HeLa_CUDC101_4h_R1 2 IYHPNIDEK 9 0 A0A1B0GUS4;P68036-2;P68036;P68036-3 A0A1B0GUS4 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 0 0 ; ; 99.688 0.016676 61296000 8806.4 7670.2 8410.9 7835.7 8270.9 8535.9 7230.8 8090.6 8765.1 8688.7 FALSE FALSE TRUE 7774.127142 7906.509771 8865.618696 8155.273715 7660.772185 8373.091929 7509.694378 9011.601201 8403.798868 8637.019226 0.900093764 0.915421115 1.026467403 0.944223175 0.886969449 0.969442317 0.869477557 1.043369358 0.972997587 1 13.07631779 -6.00437152 24.92414498 0.954640542 0.936118039 0.016541391 0.056157782 774.6420412 4416653.724 0.008767329 0.015630793 9.90E-07 6.00437152 -0.018522503 IYISLLK ddPTM_HeLa_CUDC101_4h_R1 1 IYISLLK 7 0 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-19;O60716-4;O60716-6;O60716-11;O60716-13;O60716-21;O60716-24;O60716-9;O60716-17;O60716-16;O60716-10;O60716-23;O60716-15;O60716-18;O60716-12;O60716-22;O60716-20;O60716-14;O60716-27;O60716-29;O60716-25;O60716-26;O60716-31;O60716-32;O60716-30;O60716-28 O60716-5 CTNND1 Catenin delta-1 0 0 119.89 0.028383 1324600 1339.5 1050.6 774.43 1075.6 919.53 1245.2 1261.6 862.77 894.27 663.63 FALSE FALSE TRUE 1182.485841 1082.967741 816.2980283 1119.467617 851.6981039 1221.449885 1310.260335 960.9842494 857.4078121 659.6826992 1.792506976 1.641649451 1.23741009 1.696978894 1.291072367 1.851571803 1.986197813 1.456737081 1.299727601 1 9.365628459 -9.379513391 0.974461743 0.979483237 1.632060719 0.352411312 0.241761455 0.383829489 0.618781375 0.183341407 0.041658395 4.17E-10 9.379513391 0.652577482 S(ph)SGSPYGGGYGSGGGSGGYGSR ddPTM_HeLa_CUDC101_4h_R1 3 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;P51991-2;H7C1J8 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 0 S(0.558)S(0.069)GS(0.373)PYGGGYGSGGGSGGYGSR;S(0.333)S(0.333)GS(0.333)PYGGGYGSGGGSGGYGSR;S(0.371)S(0.371)GS(0.259)PYGGGYGSGGGSGGYGSR ;; 256.4 1.62E-72 79474000 6088.81 5817.27 5855.13 5163.89 6826.81 6779.92 5412.75 5354.56 6190.96 5887.79 TRUE FALSE FALSE 5375.088922 5996.493194 6171.676039 5374.495754 6323.209827 6650.604322 5621.521581 5964.101467 5935.766008 5852.769163 0.918383892 1.024556586 1.054488203 0.918282544 1.080379159 1.136317551 0.960489202 1.019022159 1.014180782 1 12.51490366 -7.169205531 8.595573724 0.961489326 1.028282559 0.106127161 0.061627088 0.420443676 36.11176952 0.010461284 0.012821164 6.77E-08 7.169205531 0.066793233 EPEPAAGPQAEESATVSAPAPMS(ph)PTRR ddPTM_HeLa_CUDC101_4h_R1 1 EPEPAAGPQAEESATVSAPAPMSPTRR 27 1 Q9BWG6-2;Q9BWG6 Q9BWG6-2 SCNM1 Sodium channel modifier 1 1 0 EPEPAAGPQAEESATVSAPAPMS(0.791)PT(0.209)RR 113.87 1.78E-08 6582500 1372.6 954.79 978.09 829.48 1022.2 1253 740.36 859.37 1140.1 1078.5 TRUE FALSE FALSE 1211.705909 984.2059482 1030.968504 863.3097797 946.7943425 1229.101113 768.9159332 957.1972071 1093.104595 1072.085034 1.130233023 0.918029743 0.96164807 0.805262411 0.883133625 1.146458605 0.717215434 0.89283702 1.019606245 1 10.06620362 -7.168615952 6.340005584 1.061345502 0.902301912 0.275529521 0.108466314 0.217513708 12.46880498 0.018243953 0.022384748 6.78E-08 7.168615952 -0.15904359 IYPSRDEYEAHQER ddPTM_HeLa_CUDC101_4h_R1 1 IYPSRDEYEAHQER 14 1 X6RFN3;Q99496 X6RFN3 RNF2 E3 ubiquitin-protein ligase RING2 0 0 71.879 0.024095 11745000 1657.9 1400.2 1856.9 1514.1 2047.2 1433.5 1449.9 1534.3 1504.6 1247.1 FALSE FALSE TRUE 1463.563475 1443.338502 1957.289631 1575.851542 1896.182135 1406.158376 1505.823129 1708.95851 1442.579751 1239.682194 1.180595706 1.164281063 1.578864035 1.271173814 1.529571163 1.134289403 1.214684809 1.378545662 1.16366901 1 10.2757546 -7.781968622 0.860410342 1.037562831 1.332302037 0.32253013 0.142253307 0.340544129 0.539972314 0.038254292 0.033352664 1.65E-08 7.781968622 0.294739206 IYPSREEYEAHQDR ddPTM_HeLa_CUDC101_4h_R1 1 IYPSREEYEAHQDR 14 1 Q06587;Q06587-2 Q06587 RING1 E3 ubiquitin-protein ligase RING1 0 0 95.631 0.0057012 9514300 6537.3 5714.2 5039.8 5889.2 7079.1 5819 5348.9 6149.2 6334.4 6348.9 FALSE FALSE TRUE 5771.007604 5890.247729 5312.266833 6129.387031 6556.888897 5708.01227 5555.208865 6849.200072 6073.293351 6311.13646 0.914416546 0.933310152 0.84172904 0.971201791 1.03893949 0.904434931 0.880223221 1.085256216 0.962313743 1 12.6236841 -4.241907193 23.83414249 0.94764382 1.085256456 0.377006499 0.055485358 2197.675434 2681634.614 0.008267937 0.383146658 5.73E-05 4.241907193 0.137612637 SQPSS(ph)SVPSSYIR ddPTM_HeLa_CUDC101_4h_R1 1 SQPSSSVPSSYIR 13 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 SQPS(0.205)S(0.384)S(0.384)VPS(0.01)S(0.01)Y(0.008)IR 81.625 0.018244 9316100 1639.7 1282.7 1112.2 1202.8 1434 1207.1 1363.6 1115.1 1224.3 1459.2 TRUE FALSE FALSE 1447.496852 1322.218467 1172.328896 1251.855383 1328.216677 1184.076579 1416.194509 1242.038477 1173.833836 1450.520614 0.997915395 0.911547519 0.808212503 0.863038671 0.915682731 0.816311445 0.976335321 0.856270821 0.80925002 1 10.50235508 -7.168432185 3.759337037 0.999238174 0.875392337 0 0.075282061 0.10952871 2.876486263 0.007211826 0.008856 6.79E-08 7.168432185 -0.123845836 (ac)S(ph)SPPEGKLETK ddPTM_HeLa_CUDC101_4h_R1 1 SSPPEGKLETK 11 1 P51397;B4DQ75 P51397 DAP Death-associated protein 1 1 0 S(0.5)S(0.5)PPEGKLETK 52.725 0.021272 1208600000 6365.7 7841.8 7884.2 7978.1 12003 7956.3 7288.6 5262.8 8388.5 7317.7 TRUE FALSE FALSE 5619.522296 8083.396563 8310.4437 8303.481402 11117.5626 7804.546834 7569.723744 5861.895879 8042.722479 7274.173995 0.772530641 1.111245974 1.142458746 1.14150162 1.52836083 1.072911761 1.040630008 0.80585038 1.105654399 1 12.82856772 -7.16553918 6.89777865 0.892801588 1.13423844 0.10349649 0.186365968 0.260187134 16.20753064 0.031234888 0.038313326 6.83E-08 7.16553918 0.241436852 IYVDDGLISLQVK ddPTM_HeLa_CUDC101_4h_R1 2 IYVDDGLISLQVK 13 0 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BQ34 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 229.64 8.80E-33 18812600 3978.6 3859.4 3213.2 3157.1 3974.6 3211.1 2868.9 3246.7 3684.3 3627.1 FALSE FALSE TRUE 3512.234539 3978.303539 3386.915311 3285.860184 3681.401677 3149.853618 2979.554434 3616.291204 3532.431595 3605.525848 0.974125464 1.103390658 0.939367919 0.911340072 1.021044317 0.873618371 0.826385543 1.002985794 0.979727159 1 11.81599397 -5.723292059 1.10770588 0.99386653 0.901306669 0.233300606 0.065717439 0.534895746 1.273878763 0.010322467 0.031154517 1.89E-06 5.723292059 -0.092559861 IYVLLR ddPTM_HeLa_CUDC101_4h_R1 1 IYVLLR 6 0 P84090 P84090 ERH Enhancer of rudimentary homolog 0 0 97.908 0.0069252 237540 679.39 335.81 154.48 373.9 282.63 269.26 270.1 97.198 248.94 0 FALSE FALSE TRUE 599.7529341 346.1559081 162.8316561 389.1492581 261.780948 264.1243141 280.5178475 108.2626274 238.6785878 0 0 K(ac)AEKAAAEEPR ddPTM_HeLa_CUDC101_4h_R1 1 KAEKAAAEEPR 11 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 0 1 K(0.544)AEK(0.456)AAAEEPR 90.434 0.032857 2928900 4503.9 4493.6 4335.3 4516.2 4129.2 3901.3 4115.4 4391.3 4004.3 4447.4 FALSE TRUE FALSE 3975.959669 4632.04249 4569.679432 4700.390157 3824.597143 3826.889203 4274.132357 4891.187842 3839.241059 4420.946667 0.899345767 1.047749009 1.033642741 1.063208971 0.865108184 0.865626639 0.966791205 1.106366625 0.868420578 1 12.11013961 -4.265280474 6.172372238 0.959698428 1.109701497 0.266694295 0.074392312 0.132777255 26.36233059 0.010356135 0.083560459 5.43E-05 4.265280474 0.150003069 K(ac)AIKLRPIAVIK ddPTM_HeLa_CUDC101_4h_R1 1 KAIKLRPIAVIK 12 3 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 1 K(0.546)AIK(0.454)LRPIAVIK 57.019 0.036882 435230 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 ASQPDLVDT(ph)PTSSKPQPK ddPTM_HeLa_CUDC101_4h_R1 1 ASQPDLVDTPTSSKPQPK 18 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AS(0.068)QPDLVDT(0.801)PT(0.104)S(0.024)S(0.003)KPQPK 90.084 0.0061051 41475000 4256.4 4411.5 4908.7 4208.6 4416.1 4251.5 3177.1 1023.4 3499.8 4964.3 TRUE FALSE FALSE 3757.471244 4547.413086 5174.07917 4380.244899 4090.333101 4170.409721 3299.641811 1139.899719 3355.536763 4934.772123 0.761427509 0.921504169 1.048494042 0.887628606 0.828879835 0.845106849 0.668651303 0.230993385 0.679978058 1 12.26876775 -4.264801759 1.579122613 0.896272217 4.13E-17 0.78445312 0.101965489 0.344574045 0.796013737 0.014670209 0.474131563 5.43E-05 4.264801759 -0.896272217 down K(ac)AVTK(ac)AQK ddPTM_HeLa_CUDC101_4h_R1 2 KAVTKAQK 8 2 O60814;P57053;P58876;P62807;Q16778;Q8N257;Q93079;U3KQK0;Q99877;Q99880;Q6DRA6;Q6DN03 O60814;P58876;P62807;Q16778;Q8N257;Q93079;U3KQK0;Q99880;Q6DRA6 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BL;HIST2H2BD;HIST2H2BC Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Putative histone H2B type 2-D;Putative histone H2B type 2-C 0 2 ; K(1)AVTK(1)AQK;K(1)AVTK(1)AQK 108.43 0.0089435 4082300 4447.8 3546 1645.14 4959.8 3092.9 4098.5 2503.5 1799.42 626.11 223.635 FALSE TRUE FALSE 3926.435626 3655.248057 1734.081245 5162.082082 2864.742929 4020.327941 2600.060834 2004.258699 600.3014808 222.3048091 17.66239625 16.44250555 7.800466629 23.22073959 12.88655401 18.0847547 11.69592707 9.015813502 2.700353102 1 7.796395348 -9.32256839 0.941675319 0.621014187 14.86482445 0.573398113 4.379525315 0.32507731 0.494421505 3.266782537 0.779241899 4.76E-10 9.32256839 14.24381026 K(ac)AVTK(ac)VQK ddPTM_HeLa_CUDC101_4h_R1 2 KAVTKVQK 8 2 Q5QNW6;Q5QNW6-2 Q5QNW6 HIST2H2BF Histone H2B type 2-F 0 2 ; K(1)AVTK(1)VQK;K(1)AVTK(1)VQK 116.3 0.0035535 148096000 13404.7 12295.7 10008.2 14358.1 10131 10010.9 9239.4 6450.2 2892.77 1520.95 FALSE TRUE FALSE 11833.42139 12674.51594 10549.27357 14943.68538 9383.656314 9819.958762 9595.766753 7184.464695 2773.528796 1511.903322 7.826837349 8.383152389 6.977478926 9.884021792 6.206518749 6.495097021 6.346812402 4.751933931 1.834461739 1 10.56215017 -9.204378353 0.878737382 0.885195995 7.17885195 0.7388342 1.345964146 0.246710194 0.333435534 1.019190355 0.266872365 6.25E-10 9.204378353 6.293655956 GLAAEDS(ph)GGDSK ddPTM_HeLa_CUDC101_4h_R1 2 GLAAEDSGGDSK 12 0 P41227;P41227-2 P41227 NAA10 N-alpha-acetyltransferase 10 1 0 GLAAEDS(1)GGDSK;GLAAEDS(0.998)GGDS(0.002)K ; 193.11 2.55E-12 58553000 7405.7 4471.5 5298.5 5516.1 4631.9 5064.8 5010.9 2917.1 5971.6 7723.5 TRUE FALSE FALSE 6537.615072 4609.261615 5584.952937 5741.070401 4290.213965 4968.197379 5204.172092 3249.170873 5725.44812 7677.560279 0.851522467 0.600354989 0.727438501 0.747772755 0.558799125 0.647106268 0.677841906 0.423203564 0.745737957 1 12.90643222 -7.165043902 0.261986252 1.071439678 0.473754905 0.414392215 0.115503867 0.600357419 0.146474181 0.113453029 0.138726727 6.84E-08 7.165043902 -0.597684773 K(ac)EFETNLR ddPTM_HeLa_CUDC101_4h_R1 1 KEFETNLR 8 1 Q75V66 Q75V66 ANO5 Anoctamin-5 0 1 K(1)EFETNLR 45.081 0.038961 0 181.45 107.87 0 195.91 198.72 224.13 0 183.74 143.53 0 FALSE TRUE FALSE 160.1807061 111.1933468 0 203.9000566 184.0608215 219.8550937 0 204.6562189 137.6136326 0 0 K(ac)FADIGNTVK ddPTM_HeLa_CUDC101_4h_R1 1 KFADIGNTVK 10 1 E9PFD2;P11172-4;P11172-2;P11172-3;P11172 E9PFD2 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase 0 1 K(1)FADIGNTVK 84.507 0.035245 708580 422.1 124.9 293.01 147.64 265.5 398.97 343.17 360.53 200.5 294.38 FALSE TRUE FALSE 372.6220779 128.748021 308.8510069 153.6613974 245.914594 391.360312 356.4061819 401.5712779 192.2353051 292.6290147 1.273359985 0.439970114 1.055435351 0.525106499 0.840362991 1.33739408 1.217945467 1.372287975 0.656924965 1 8.192929012 -5.243771317 24.22677988 1.010069548 1.300082849 0.241044004 0.282585836 782.8211267 1073415.565 0.041364712 0.105165036 5.70E-06 5.243771317 0.290013301 K(ac)FAEALGSTEAK ddPTM_HeLa_CUDC101_4h_R1 1 KFAEALGSTEAK 12 1 P78347-2;P78347-4;P78347-3;P78347;A0A494C1K3;A0A494C0Q7 P78347-2 GTF2I General transcription factor II-I 0 1 K(1)FAEALGSTEAK 113.22 0.0051577 0 0 0 0 0 68.001 183.12 0 0 78.822 0 FALSE TRUE FALSE 0 0 0 0 62.98470171 179.6272911 0 0 75.5729238 0 0 K(ac)FAETQPK ddPTM_HeLa_CUDC101_4h_R1 1 KFAETQPK 8 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 1 K(1)FAETQPK 116.37 0.0024348 4625500 4812.5 2224.5 2854 2542.6 3560.8 3224.5 4774.5 2380.9 4911.5 3621 FALSE TRUE FALSE 4248.386045 2293.034208 3008.295873 2646.298218 3298.126878 3162.998035 4958.654064 2651.932032 4709.045891 3599.462131 1.180283579 0.637049127 0.835762612 0.735192682 0.916283255 0.878741856 1.377609733 0.736757864 1.308263768 1 11.81356562 -7.298983626 24.97507723 1.085133911 0.888299131 0.271135401 0.204616857 705.892387 469570.0328 0.033549372 0.038365675 5.02E-08 7.298983626 -0.19683478 K(ac)FDQLLAEEK ddPTM_HeLa_CUDC101_4h_R1 1 KFDQLLAEEK 10 1 P35579;P35579-2;A0A0C4DFM8;Q7Z406;Q7Z406-6;Q7Z406-2;A1L2Z2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2 P35579;P35580;P35749-4 MYH9;MYH14;MYH10;MYH11 Myosin-9;Myosin-14;Myosin-10;Myosin-11 0 1 K(1)FDQLLAEEK 101.71 0.010027 1105300 1481.2 595.36 417.37 723.88 1311.5 1149.4 1315.5 942.97 739.63 660.83 FALSE TRUE FALSE 1307.575981 613.7023359 439.9342847 753.4029553 1214.753258 1127.47711 1366.239276 1050.313893 709.1421383 656.8993538 1.990527124 0.934241041 0.669713377 1.146907743 1.849222793 1.716362033 2.079830446 1.598896219 1.079529359 1 9.359528536 -9.683395539 1.55404897 1.000229561 1.561289154 0.136370929 0.438743581 0.62476817 2.719984482 0.35632625 0.07939413 2.07E-10 9.683395539 0.561059593 K(ac)FEEETVK ddPTM_HeLa_CUDC101_4h_R1 1 KFEEETVK 8 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 0 1 K(1)FEEETVK 93.111 0.023415 995580 161.34 135.25 181.83 147.76 238.9 169.53 200.97 170.94 224.7 163.34 FALSE TRUE FALSE 142.4279698 139.4168922 191.6602798 153.7862915 221.276823 166.2964977 208.7214802 190.3991186 215.4377709 162.3684464 0.877189952 0.858645231 1.180403484 0.947143949 1.3628068 1.024192208 1.285480553 1.172636204 1.326845059 1 7.343127486 -6.2881662 1.370603871 0.937376833 1.194787425 0.047654047 0.172803678 0.259426904 0.957806935 0.019150575 0.035880438 5.15E-07 6.2881662 0.257410592 K(ac)FGDPVVQSDMK ddPTM_HeLa_CUDC101_4h_R1 3 KFGDPVVQSDMK 12 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 1 ;; K(1)FGDPVVQSDMK;K(1)FGDPVVQSDMK;K(1)FGDPVVQSDMK 158.34 2.01E-05 7792200 7061.12 3340.24 3103.29 2860.4 7040.4 5487.22 6341.66 5092.33 5040.59 3169.04 FALSE TRUE FALSE 6233.426218 3443.148835 3271.063244 2977.059476 6521.043718 5382.560421 6586.259951 5672.020263 4832.814747 3150.190409 1.978745856 1.092997054 1.038370009 0.945041121 2.07004748 1.708646057 2.090749794 1.800532516 1.534134169 1 11.62122332 -9.580328008 1.346526202 0.997971132 1.625128678 0.022932717 0.43852377 0.564244692 1.824831197 0.322280825 0.074167001 2.63E-10 9.580328008 0.627157546 K(ac)FGNPGEK ddPTM_HeLa_CUDC101_4h_R1 2 KFGNPGEK 8 1 P17844-2;P17844;J3KTA4;J3QR02;J3KRX8;J3QRQ7;J3KTQ4;X6RLV5;J3QKN9 P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 0 1 ; K(1)FGNPGEK;K(1)FGNPGEK 115.71 0.0027266 37506000 7734.2 8341.5 9733.9 8580.6 9289.1 8575 8643.8 9997.6 7263.3 7383.7 FALSE TRUE FALSE 6827.6088 8598.491728 10260.14408 8930.553957 8603.861599 8411.446162 8977.194261 11135.68637 6963.9037 7339.781424 0.930219635 1.171491524 1.39788142 1.216732957 1.172223136 1.146007718 1.223087411 1.517168663 0.948788976 1 12.84152139 -7.120744422 4.187679497 0.967486075 1.264073182 0.641662215 0.105958648 0.110629966 3.272696223 0.017795134 0.022020651 7.57E-08 7.120744422 0.296587107 K(ac)FGTINIVHPK ddPTM_HeLa_CUDC101_4h_R1 2 KFGTINIVHPK 11 1 Q9Y617-2;Q9Y617 Q9Y617-2 PSAT1 Phosphoserine aminotransferase 0 1 ; K(1)FGTINIVHPK;K(1)FGTINIVHPK 99.539 0.0094722 3388700 8608.3 3408.5 2922 2664.3 6588.1 5899.7 6398.5 6542.8 5779.3 2797.3 FALSE TRUE FALSE 7599.248123 3513.511845 3079.972159 2772.96167 6102.108988 5787.173052 6645.292288 7287.605905 5541.074808 2780.661535 2.732892165 1.263552504 1.107640078 0.997230923 2.194481029 2.081221673 2.389824221 2.620817317 1.992718185 1 11.44121243 -9.661002319 1.514745773 1.001249297 2.007318614 0 0.660814368 0.480942262 1.989468025 0.480811779 0.108640945 2.18E-10 9.661002319 1.006069316 K(ac)FLPLFDR ddPTM_HeLa_CUDC101_4h_R1 1 KFLPLFDR 8 1 P61604;B8ZZL8;S4R3N1 P61604 HSPE1;HSPE1-MOB4 "10 kDa heat shock protein, mitochondrial" 0 1 K(1)FLPLFDR 91.069 0.026988 3947300 779.61 454.15 283.59 233.42 400.18 517.02 538.88 422.15 298.56 150.65 FALSE TRUE FALSE 688.2252976 468.1418232 298.9217332 242.9398765 370.6595187 507.1587049 559.6647821 470.2058496 286.2532304 149.7539271 4.595707845 3.126073768 1.996086106 1.622260472 2.475123864 3.386613725 3.73722942 3.139856555 1.911490643 1 7.226450026 -5.231671524 8.016850644 2.617807898 3.455640085 0.173936569 0.941703899 0.646485693 154.2064836 0.197318008 0.498387172 5.87E-06 5.231671524 0.837832187 K(ac)FNILGTNTK ddPTM_HeLa_CUDC101_4h_R1 2 KFNILGTNTK 10 1 G8JLH9;P40763-2;P40763;P40763-3 G8JLH9 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 0 1 ; K(1)FNILGTNTK;K(1)FNILGTNTK 133.89 0.0015467 1444910 2178 1190.45 869.83 1139 1602.16 1587.35 1616.48 1636.11 1394.48 907.9 FALSE TRUE FALSE 1922.698142 1227.126353 916.8556409 1185.453343 1483.971849 1557.073943 1678.828175 1822.358149 1336.998944 902.4997704 2.130413995 1.359697136 1.015906786 1.313522044 1.644290555 1.725290127 1.860197897 2.01923392 1.48143965 1 9.817782755 -9.628697287 1.455087972 1.000940251 1.681671071 0.103091912 0.351462855 0.407276982 1.552559991 0.266515988 0.061162677 2.35E-10 9.628697287 0.680730819 K(ac)FQGIKHECQANGPEDLNR ddPTM_HeLa_CUDC101_4h_R1 1 KFQGIKHECQANGPEDLNR 19 2 P60981;P60981-2 P60981 DSTN Destrin 0 1 K(0.573)FQGIK(0.427)HECQANGPEDLNR 102.36 0.0025272 6177400 3477.4 4915.5 5508.5 8315.3 9281.8 9373.6 8912.2 8911 2688.9 738.36 FALSE TRUE FALSE 3069.784443 5066.940729 5806.306172 8654.433876 8597.100106 9194.814197 9255.946539 9925.39222 2578.062404 733.9682019 4.182448825 6.903488074 7.910841583 11.79129267 11.71317788 12.52753753 12.61082771 13.52291856 3.512498767 1 9.519573752 -6.807744828 0.57919872 1.541745689 13.58585314 0.962032946 0.83154655 0.069859118 0.049678941 0.190803446 0.325835762 1.56E-07 6.807744828 12.04410745 K(ac)FVADGIFK ddPTM_HeLa_CUDC101_4h_R1 2 KFVADGIFK 9 1 E9PL09;P23396;P23396-2;E9PPU1;E9PQ96;E9PJH4;F2Z2S8;E9PK82;H0YCJ7;E9PQX2 E9PL09 RPS3 40S ribosomal protein S3 0 1 ; K(1)FVADGIFK;K(1)FVADGIFK 107.21 0.0018846 371700 1994.99 410.18 380.12 742.15 930.58 862.74 718 514.76 336.63 358.63 FALSE TRUE FALSE 1761.140296 422.8171596 400.670437 772.4180848 861.9329674 846.2846719 745.6935005 573.3581977 322.7539689 356.4968528 4.940128594 1.186033358 1.123910166 2.166689772 2.417785629 2.373891004 2.09172534 1.608312088 0.905348719 1 8.47774553 K(ac)FVETPGQK ddPTM_HeLa_CUDC101_4h_R1 1 KFVETPGQK 9 1 P05455;E7ERC4 P05455 SSB Lupus La protein 0 1 K(1)FVETPGQK 85.355 0.038228 2074800 2001.6 1030.3 1034.5 790.33 2510.9 1964.6 2312.3 1933.3 2017.9 1276.6 FALSE TRUE FALSE 1766.975482 1062.042322 1090.428199 822.5630735 2325.675909 1927.128528 2401.486186 2153.379057 1934.721308 1269.006726 1.392408287 0.836908347 0.859276926 0.648194416 1.832674218 1.518611752 1.892414071 1.696901216 1.524594998 1 10.309484 -5.739732378 24.99989425 1.099847332 1.730916621 0.620756097 0.262610067 135.6405871 156216.0506 0.03892872 0.077802814 1.82E-06 5.739732378 0.631069288 K(ac)FVIKPIDK ddPTM_HeLa_CUDC101_4h_R1 1 KFVIKPIDK 9 2 E7EQR4;P15311;A0A2R8Y7M3;A0A2R8Y5S7;P35241-4;P35241;P35241-5;P26038 E7EQR4;A0A2R8Y7M3;P26038 EZR;RDX;MSN Ezrin;Radixin;Moesin 0 1 K(1)FVIKPIDK 122.26 0.00020019 0 179.85 173.06 0 217.44 209.76 65.383 256.6 0 134.45 0 FALSE TRUE FALSE 158.7682556 178.3917735 0 226.3081431 194.2864227 64.13592821 266.497148 0 128.9079141 0 0 EEPVAIES(ph)PGQDLLGESR ddPTM_HeLa_CUDC101_4h_R1 2 EEPVAIESPGQDLLGESR 18 0 Q96RG2-4;Q96RG2;Q96RG2-2 Q96RG2-4 PASK PAS domain-containing serine/threonine-protein kinase 1 0 EEPVAIES(0.999)PGQDLLGES(0.001)R;EEPVAIES(1)PGQDLLGESR ; 209.45 5.36E-24 8719000 3663.1 3292.6 2902.09 2782.34 3654.8 3682.6 3047.3 1272.4 3716.7 3368.1 TRUE FALSE FALSE 3233.716971 3394.041103 3058.985764 2895.815851 3385.192685 3612.360541 3164.835382 1417.244873 3563.496053 3348.066391 0.965846131 1.01373172 0.913657439 0.864921872 1.011088876 1.078939339 0.945272588 0.4233025 1.064344501 1 11.70911242 -4.264228266 4.969281069 0.980218573 0.39638913 0.884010531 0.061060806 0.035874414 2.712388091 0.007706484 0.071632084 5.44E-05 4.264228266 -0.583829443 down K(ac)GIDILDYHFHK ddPTM_HeLa_CUDC101_4h_R1 1 KGIDILDYHFHK 12 1 A0A0A6YYG5;Q53S48;Q9Y6Q2;Q9Y6Q2-3;Q9Y6Q2-2 A0A0A6YYG5 STON1-GTF2A1L;ALF;STON1 Stonin-1 0 1 K(1)GIDILDYHFHK 76.228 0.032411 0 222.74 208.35 212.77 130.97 155.14 58.762 137.34 0 0 136.41 FALSE TRUE FALSE 196.6307549 214.7690165 224.2729898 136.3115227 143.6956313 57.64121275 142.6372498 0 0 135.5986273 1.450093993 1.583858339 1.653947347 1.005257394 1.059713024 0.425086993 1.051907771 0 0 1 7.083198763 -5.383032482 1.408985154 1.278626125 0.477046498 0.198734989 0.510196909 0.286414381 1.071075142 0.050851556 0.17737494 4.14E-06 5.383032482 -0.801579628 S(ph)MSDVSAEDVQNLR ddPTM_HeLa_CUDC101_4h_R1 2 SMSDVSAEDVQNLR 14 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;E9PJ10;E9PK58;E9PLU6 E9PMS6 LMO7 LIM domain only protein 7 1 0 S(0.999)MS(0.001)DVSAEDVQNLR;S(0.994)MS(0.003)DVS(0.003)AEDVQNLR ; 235.71 1.86E-43 65745000 1835.08 1256.15 1276.93 1087.25 1438.71 1223.45 1163.61 1423.38 1550.5 1358.33 TRUE FALSE FALSE 1619.974704 1294.850493 1345.964698 1131.592754 1332.57923 1200.11473 1208.490827 1585.411826 1486.587734 1350.250593 1.199758558 0.958970505 0.996825853 0.838061291 0.986912531 0.888808889 0.895012255 1.174161177 1.100971732 1 10.39901147 -7.164831577 9.79346737 1.094297431 0.954425677 0.297286768 0.096219715 0.432983108 41.41866503 0.017814075 0.021826407 6.84E-08 7.164831577 -0.139871754 K(ac)HEAFESDLAAHQDR ddPTM_HeLa_CUDC101_4h_R1 1 KHEAFESDLAAHQDR 15 1 O43707;O43707-2;P12814-4;P12814-3;P12814;P12814-2;H9KV75;A0A494C1A0;P35609;P35609-2;A0A494C060;F6THM6;H7C5W8 O43707;P12814-4 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 0 1 K(1)HEAFESDLAAHQDR 88.108 0.0086087 4290200 1300.6 340.78 353.99 596.52 585.4 705.65 898.84 656.94 632.82 654.71 FALSE TRUE FALSE 1148.14564 351.2790279 373.1277702 620.848664 542.2162083 692.1909019 933.5085599 731.7233942 606.7348918 650.8157558 1.764163866 0.53975188 0.573323198 0.953954569 0.833133192 1.063574285 1.434366872 1.12431727 0.93226829 1 9.346105368 -7.261141421 24.99999852 1.360855153 0.939446775 0.114622871 0.328086488 32.06747152 2690627.935 0.064838762 0.076798691 5.48E-08 7.261141421 -0.421408378 K(ac)HLEINPDHPIVETLR ddPTM_HeLa_CUDC101_4h_R1 1 KHLEINPDHPIVETLR 16 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 1 K(1)HLEINPDHPIVETLR 43.454 0.034765 855810 0 0 0 73.25 0 0 172.07 144.79 68.999 141.44 FALSE TRUE FALSE 0 0 0 76.23745161 0 0 178.7067975 161.2723083 66.15483202 140.5987086 0 0 0 0.542234366 0 0 1.271041529 1.147039756 0.47052233 1 7.135439533 -9.504135399 1.286575092 0.99566551 0.316456725 0.033936092 0.489810772 0.576805066 1.725963468 0.336738116 0.083734607 3.13E-10 9.504135399 -0.679208785 K(ac)INPTESTSK ddPTM_HeLa_CUDC101_4h_R1 2 KINPTESTSK 10 1 R4GMW5;R4GMN1;Q8NHP6-2;Q8NHP6 R4GMW5 MOSPD2 Motile sperm domain-containing protein 2 0 1 ; K(1)INPTESTSK;K(1)INPTESTSK 96.668 0.01337 3511400 1500.38 540.48 456.94 472.16 949.65 905.67 1127.85 916.89 753.4 1336.76 FALSE TRUE FALSE 1324.507731 557.1315482 481.6435586 491.4167256 879.5962115 888.3958537 1171.351552 1021.265051 722.3445331 1328.808892 0.996763145 0.419271388 0.362462625 0.369817457 0.661943351 0.668565554 0.881504902 0.768556756 0.543603025 1 10.37591792 -7.277558698 24.27057798 0.998471512 0.59002539 0.129533443 0.215526889 312.3156466 470247.1547 0.030657465 0.035121374 5.28E-08 7.277558698 -0.408446122 K(ac)IVAAKYEVIHSK ddPTM_HeLa_CUDC101_4h_R1 1 KIVAAKYEVIHSK 13 2 Q92576-2;Q92576;E7EVH3;D6R9X2;E9PE34;A0A1B0GX99 Q92576-2 PHF3 PHD finger protein 3 0 1 K(0.727)IVAAK(0.273)YEVIHSK 69.716 0.027692 1380900 1039.8 1484.9 1462.7 1427 1405.9 1188.9 1296 889.64 1543.1 1649.2 FALSE TRUE FALSE 917.9162202 1530.648009 1541.777986 1485.199228 1302.189558 1166.223713 1345.987154 990.9130216 1479.492765 1639.390485 0.559913107 0.93366896 0.940458055 0.905945985 0.794313234 0.711376407 0.821029014 0.6044399 0.902465141 1 10.67894381 -3.598298728 1.222652818 0.815124098 2.42E-12 0.215680116 0.125407952 12.05224531 4.699389071 0.025717462 18.51096837 0.000252175 3.598298728 -0.815124098 K(ac)K(ac)LDASILEDR ddPTM_HeLa_CUDC101_4h_R1 1 KKLDASILEDR 11 2 J3KMZ8;Q92785 J3KMZ8 DPF2 Zinc finger protein ubi-d4 0 2 K(1)K(1)LDASILEDR 89.266 0.017508 0 388.47 226.76 185.81 404.86 332.58 331.57 432.34 425.27 435.45 348.37 FALSE TRUE FALSE 342.9341355 233.7462068 195.8554506 421.3719408 308.046236 325.2458547 449.0154986 473.6810178 417.5005667 346.2978797 0.990286558 0.67498596 0.565569303 1.216790415 0.889541213 0.939208334 1.296616367 1.367842674 1.205611097 1 8.435869744 -4.727328058 4.9070975 0.946506653 1.346309997 0.40666863 0.191917865 0.133256472 7.544929969 0.024911111 0.094758732 1.87E-05 4.727328058 0.399803344 K(ac)KEESTAASETTEGSQGDSK(ac)NAK ddPTM_HeLa_CUDC101_4h_R1 1 KKEESTAASETTEGSQGDSKNAK 23 3 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 0 2 K(0.5)K(0.5)EESTAASETTEGSQGDSK(1)NAK 59.429 0.012762 1385400 519.49 378.76 367.85 278.77 521.78 292.74 277.81 199.37 558.73 280.56 FALSE TRUE FALSE 458.5961697 390.4291467 387.7370837 290.1394455 483.2893289 287.1564722 288.5252248 222.0654749 535.6989129 278.8912166 1.644355011 1.399933463 1.390280728 1.040331958 1.732895481 1.029636127 1.034543964 0.796244061 1.920816723 1 8.123558689 -5.023026897 23.86430435 1.331144332 0.944567798 0.335770195 0.289788121 404.5706836 419285.3421 0.039277611 0.101035913 9.48E-06 5.023026897 -0.386576533 K(ac)LAAAEGLEPK ddPTM_HeLa_CUDC101_4h_R1 2 KLAAAEGLEPK 11 1 P41236;Q6NXS1 P41236 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3 0 1 ; K(1)LAAAEGLEPK;K(1)LAAAEGLEPK 140.24 0.00034503 1743640 1558.9 1396.31 1171.21 1300.12 1495.1 1398.36 1636.2 1873.43 1628.93 1626.17 FALSE TRUE FALSE 1376.168105 1439.328656 1234.529155 1353.144513 1384.809452 1371.688613 1699.308782 2086.693699 1561.784816 1616.497469 0.851327102 0.890399573 0.76370621 0.837084214 0.856672824 0.848555992 1.051228854 1.290873471 0.96615358 1 10.65865553 -4.400118804 2.648609839 0.897736604 1.315726058 0.783812889 0.066875649 0.157695863 1.702621275 0.01183848 0.12436104 3.98E-05 4.400118804 0.417989454 K(ac)LAGSELFAK ddPTM_HeLa_CUDC101_4h_R1 1 KLAGSELFAK 10 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 0 1 K(1)LAGSELFAK 78.939 0.023442 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 K(ac)LAVNMVPFPR ddPTM_HeLa_CUDC101_4h_R1 3 KLAVNMVPFPR 11 1 Q5JP53;P07437;Q5ST81;A0A075B736;Q5SQY0;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;P68371;Q3ZCM7;Q9BVA1;Q13885;P04350;K7ESM5;Q9BUF5;A0A0B4J269;Q13509;Q13509-2;Q9H4B7 Q5JP53;P68371;Q9BVA1;P04350;A0A0B4J269;Q9H4B7 TUBB;TUBB8;TUBB4B;TUBB2B;TUBB2A;TUBB4A;TUBB6;TUBB3;TUBB1 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-6 chain;Tubulin beta-3 chain;Tubulin beta-1 chain 0 1 ;; K(1)LAVNMVPFPR;K(1)LAVNMVPFPR;K(1)LAVNMVPFPR 128.36 0.0011657 752610 767.13 105.05 0 0 217.86 200.368 434.68 114.78 0 0 FALSE TRUE FALSE 677.2081843 108.286466 0 0 201.7889018 196.5463142 451.4457532 127.8460912 0 0 0 K(ac)LDASILEDR ddPTM_HeLa_CUDC101_4h_R1 2 KLDASILEDR 10 1 J3KMZ8;Q92785 J3KMZ8 DPF2 Zinc finger protein ubi-d4 0 1 ; K(1)LDASILEDR;K(1)LDASILEDR 128.91 0.0020903 2455500 970.04 987.88 991.17 1241.82 1307.25 1225.66 1355.8 1305.62 808.44 1068.91 FALSE TRUE FALSE 856.3333817 1018.315412 1044.755648 1292.466787 1210.816772 1202.282578 1408.09366 1454.246503 775.115761 1062.552076 0.80592133 0.958367533 0.983251242 1.216379711 1.139536404 1.131504615 1.32519967 1.368635511 0.729484962 1 10.05331783 -5.885124271 0.820168285 0.906886764 1.315036995 0.766348337 0.096039301 0.262745527 0.332001585 0.018217104 0.058650218 1.30E-06 5.885124271 0.408150231 K(ac)LDEAVAEAHLGK ddPTM_HeLa_CUDC101_4h_R1 2 KLDEAVAEAHLGK 13 1 P23526-2;P23526 P23526-2 AHCY Adenosylhomocysteinase 0 1 ; K(1)LDEAVAEAHLGK;K(1)LDEAVAEAHLGK 106.29 0.0057787 4270800 5892 2640.98 2222.54 1838.32 5788.1 4800.3 5453.8 4796.1 4249.4 3694.6 FALSE TRUE FALSE 5201.348692 2722.345463 2342.697235 1913.294635 5361.123395 4708.742275 5664.154893 5342.068637 4074.237933 3672.624355 1.416248489 0.741253447 0.637880983 0.520961158 1.459752721 1.282119221 1.542263609 1.454564399 1.109353296 1 11.84259563 K(ac)LDPGSEETQTLVR ddPTM_HeLa_CUDC101_4h_R1 2 KLDPGSEETQTLVR 14 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 1 ; K(1)LDPGSEETQTLVR;K(1)LDPGSEETQTLVR 239.87 4.22E-35 9652000 3351.4 1505.57 1262.1 924.26 2880.8 2666.9 3202.5 2812.6 2210.7 2005.1 FALSE TRUE FALSE 2958.553972 1551.954827 1330.332944 961.9553178 2668.289123 2616.033326 3326.021498 3132.775015 2119.57401 1993.173576 1.484343365 0.77863506 0.667444602 0.48262496 1.338713876 1.312496492 1.668706398 1.571752231 1.063416672 1 10.96085164 -5.052645386 2.203830507 1.103381823 1.618104688 0.388287206 0.299374889 0.356845323 3.344097903 0.053224898 0.193409757 8.86E-06 5.052645386 0.514722865 K(ac)LEEVVNKK ddPTM_HeLa_CUDC101_4h_R1 1 KLEEVVNKK 9 2 Q8WU90 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 0 1 K(1)LEEVVNKK 80.916 0.023205 0 242.3 143.41 111.15 178.82 308.29 293.75 362.65 202.83 282.79 286.49 FALSE TRUE FALSE 213.8979613 147.8282921 117.1591052 186.1130525 285.5480609 288.1472082 376.637532 225.9193473 271.1332765 284.7859447 0.751083279 0.519085632 0.411393566 0.653519094 1.002676102 1.011802771 1.322528513 0.793295285 0.952059895 1 8.153734135 -5.607830405 6.387046318 0.796118722 1.06049203 0.308009572 0.213464419 0.26119929 15.91882452 0.035754195 0.072052952 2.47E-06 5.607830405 0.264373308 K(ac)LESTESR ddPTM_HeLa_CUDC101_4h_R1 2 KLESTESR 8 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 ; K(1)LESTESR;K(1)LESTESR 120.99 0.0016608 3770300 2712.9 2531.8 2845.6 2685.5 2694.6 2743.2 2460.9 2108.01 2379.4 2611.4 FALSE TRUE FALSE 2394.897974 2609.801757 2999.441743 2795.026298 2495.824726 2690.87803 2555.817737 2347.977338 2281.320125 2595.867277 0.922581056 1.005367948 1.155468067 1.076721573 0.961460838 1.036600775 0.984571808 0.904505927 0.878827722 1 11.34200091 -2.550437191 14.06812153 0.987512195 1.008222019 0 0.079156602 0 0 0.010410041 0 0.002815547 2.550437191 0.020709825 K(ac)LGEMWSEQSAK ddPTM_HeLa_CUDC101_4h_R1 1 KLGEMWSEQSAK 12 1 P26583 P26583 HMGB2 High mobility group protein B2 0 1 K(1)LGEMWSEQSAK 153.49 7.06E-05 317690 267.4 107.81 53.857 0 262.09 137.41 243.6 173.43 201.56 120.44 FALSE TRUE FALSE 236.0557774 111.1314983 56.76867233 0 242.7561429 134.7891332 252.9957336 193.1725702 193.2516115 119.7236175 1.971672609 0.928233715 0.474164359 0 2.027637887 1.125835787 2.113164794 1.613487582 1.61414778 1 6.903563966 -9.912024631 2.123461376 0.996257562 1.404340132 0 0.68966573 1.034275679 8.458279008 0.563667646 0.108641256 1.22E-10 9.912024631 0.40808257 S(ph)QSKS(ph)PTGTPAR ddPTM_HeLa_CUDC101_4h_R1 1 SQSKSPTGTPAR 12 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 0 S(1)QS(0.011)KS(0.869)PT(0.113)GT(0.008)PAR 127.03 0.027007 1947700 1918.6 1734.5 1624 1826.7 2107.6 1496.9 1992.6 1442.1 1833.6 1896.2 TRUE FALSE FALSE 1693.704616 1787.937889 1711.798352 1901.200722 1952.126547 1468.349127 2069.455249 1606.262835 1758.018232 1884.921318 0.898554545 0.948547757 0.908153744 1.008636649 1.03565413 0.77899757 1.097900071 0.852164395 0.932674598 1 10.88028859 -7.164802973 0.004829281 1.896852413 1.07E-07 0.007739667 0.088264044 19571.85861 77.87742254 15257.53761 15327.5271 6.84E-08 7.164802973 -1.896852305 K(ac)LLPDDPYEK ddPTM_HeLa_CUDC101_4h_R1 1 KLLPDDPYEK 10 1 Q5TA02;P78417-3;P78417;Q5TA01;P78417-2 Q5TA02 GSTO1 Glutathione S-transferase omega-1 0 1 K(1)LLPDDPYEK 84.31 0.035668 254580 690.22 274.22 421.55 248.52 724.6 480.1 629.87 504.99 676.21 236.69 FALSE TRUE FALSE 609.3134579 282.6683932 444.3402681 258.6557198 671.1477016 470.9428924 654.1642969 562.4760204 648.3363376 235.2821574 2.589713834 1.20140174 1.888542136 1.09934269 2.852522729 2.001609037 2.78033959 2.390644606 2.755569504 1 7.878248108 -9.492960704 1.138096031 0.976117297 2.129717857 0 0.783666598 0.474069447 1.061130633 0.447886524 0.100032411 3.21E-10 9.492960704 1.153600559 K(ac)LMDEVIK ddPTM_HeLa_CUDC101_4h_R1 1 KLMDEVIK 8 1 H7C581;Q96B26 H7C581 EXOSC8 Exosome complex component RRP43 0 1 K(1)LMDEVIK 90.15 0.010704 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 K(ac)LMVALAK ddPTM_HeLa_CUDC101_4h_R1 1 KLMVALAK 8 1 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5;H0YKS4;H0YNA0;H0YN52 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 1 K(1)LMVALAK 84.476 0.038525 323610 799.15 295.14 106.54 456.45 350.58 507.09 299.57 296.88 168.46 0 FALSE TRUE FALSE 705.4748484 304.2329136 112.2998747 475.0660039 324.7184119 497.4181031 311.1245152 330.6756192 161.5160075 0 0 K(ac)LNKEELPVIPK ddPTM_HeLa_CUDC101_4h_R1 2 KLNKEELPVIPK 12 2 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 0 1 ; K(0.5)LNK(0.5)EELPVIPK;K(0.941)LNK(0.059)EELPVIPK 93.959 0.026789 1565060 1490.62 1068.97 966.13 1029.86 1749.2 1515.23 2046.09 1722.38 1885.01 1685.58 FALSE TRUE FALSE 1315.891783 1101.903699 1018.36191 1071.862142 1620.165001 1486.329512 2125.008377 1918.448777 1807.30909 1675.554095 0.785347239 0.657635407 0.607776206 0.63970608 0.966942819 0.887067458 1.268242179 1.144963796 1.078633686 1 10.71042255 -4.821137566 5.478283734 0.842973759 1.206522279 0.489087028 0.154477188 0.127579176 7.574605569 0.023374339 0.074497451 1.51E-05 4.821137566 0.36354852 K(ac)LNVTEQEK ddPTM_HeLa_CUDC101_4h_R1 2 KLNVTEQEK 9 1 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 1 ; K(1)LNVTEQEK;K(1)LNVTEQEK 196.52 3.22E-07 58495000 18875.3 6623.9 7901.6 7115.3 13617 11954.5 15343 10212.5 12055.2 14472.2 FALSE TRUE FALSE 16662.76595 6827.974508 8328.784397 7405.492689 12612.50104 11726.48783 15934.78465 11375.04972 11558.27955 14386.11871 1.158253055 0.474622422 0.578945897 0.514766549 0.87671326 0.815125196 1.107650018 0.790696222 0.803432794 1 13.81238979 -7.283820093 24.92732075 1.074730618 0.744952275 0.214629575 0.198925217 589.3816621 656443.1612 0.033781541 0.038646196 5.20E-08 7.283820093 -0.329778343 K(ac)LSSWDQAETPGHTPSLR ddPTM_HeLa_CUDC101_4h_R1 2 KLSSWDQAETPGHTPSLR 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 1 ; K(1)LSSWDQAETPGHTPSLR;K(1)LSSWDQAETPGHTPSLR 126.14 0.0027295 2852400 603.9 671.31 448.35 508.57 1053.45 771.44 727.33 332.04 545.86 387.93 FALSE TRUE FALSE 533.1117575 691.9922654 472.5891572 529.3116828 975.7390923 756.7260673 755.3833617 369.8380914 523.3594198 385.6225751 1.382470301 1.794480692 1.225522539 1.372615913 2.530295567 1.962348981 1.958867065 0.959067532 1.357180449 1 8.591045702 -7.652298475 0.513587423 1.025432835 1.798803062 0.177919337 0.426380714 0.70437975 0.453275506 0.192816508 0.162520742 2.23E-08 7.652298475 0.773370227 K(ac)LTVNPGTK ddPTM_HeLa_CUDC101_4h_R1 1 KLTVNPGTK 9 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 1 K(1)LTVNPGTK 110.53 0.0040878 770200 805.63 425.31 447.65 363.85 473.33 505.06 697.29 365.47 431.65 372.99 FALSE TRUE FALSE 711.1952727 438.413297 471.8513131 378.6893757 438.4133889 495.426822 724.1847089 407.0736275 413.8572043 370.7714389 1.9181501 1.18243546 1.272620444 1.021355304 1.182435708 1.336205463 1.953183641 1.097909884 1.116205729 1 8.534386305 -9.774771305 1.75445849 0.999451782 1.464267382 0.076947938 0.315747925 0.497907002 2.774055191 0.26047901 0.055317617 1.68E-10 9.774771305 0.4648156 K(ac)LVEALCAAGHR ddPTM_HeLa_CUDC101_4h_R1 2 KLVEALCAAGHR 12 1 P23919-2;P23919;G5E9E9;H7C3A4 P23919-2 DTYMK Thymidylate kinase 0 1 ; K(1)LVEALCAAGHR;K(1)LVEALCAAGHR 81.904 0.027611 2726800 1271.71 1618.94 610.18 810.56 1505.04 1687.54 2380.9 2058.2 664.06 374.94 FALSE TRUE FALSE 1122.642082 1668.817622 643.1681765 843.6181403 1394.016198 1655.352986 2472.732111 2292.497168 636.6871657 372.7098402 3.012107437 4.477524987 1.725653866 2.263471605 3.740218388 4.441398663 6.634469616 6.150889838 1.708264975 1 8.541909099 -1 0.20786917 1.286942326 28.38952279 0.734330691 0.93809746 20.33508082 0.237495019 0.897640162 183.1741234 0.1 1 27.10258047 K(ac)LVESLPQEIK ddPTM_HeLa_CUDC101_4h_R1 2 KLVESLPQEIK 11 1 B4DLN1;P52815 B4DLN1 MRPL12 "39S ribosomal protein L12, mitochondrial" 0 1 ; K(1)LVESLPQEIK;K(1)LVESLPQEIK 198.81 1.12E-08 1936660 1864.53 1187.53 849.2 696.06 1575.91 1262.01 1746.92 1299.43 1206.86 1011.88 FALSE TRUE FALSE 1645.97262 1224.116392 895.1103207 724.4483354 1459.658259 1237.939262 1814.29929 1447.351859 1157.11272 1005.861293 1.63638131 1.216983296 0.889894389 0.720226875 1.451152629 1.230725619 1.803727117 1.438917939 1.150370064 1 9.974215657 -4.779188676 24.24881226 1.23678689 1.621322446 0.288178743 0.268943269 189.7495315 259234.3341 0.046051101 0.138632203 1.66E-05 4.779188676 0.384535556 K(ac)LVIIEGDLER ddPTM_HeLa_CUDC101_4h_R1 1 KLVIIEGDLER 11 1 J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;P06753-7;P06753-2;A0A087WWU8;P06753-5;P06753-3;P06753-6;P06753-4 J3KN67;P06753-2 TPM3 Tropomyosin alpha-3 chain 0 1 K(1)LVIIEGDLER 97.911 0.013378 281210 0 0 0 0 68.832 164.04 0 106.85 74.607 0 FALSE TRUE FALSE 0 0 0 0 63.75440049 160.9112103 0 119.0133721 71.53166788 0 0 K(ac)LVPIKPAPLPLSPGK ddPTM_HeLa_CUDC101_4h_R1 1 KLVPIKPAPLPLSPGK 16 2 A0A1B0GVH1;Q9BRW5;Q02086-2;Q02086 A0A1B0GVH1 SP2 Transcription factor Sp2 0 1 K(1)LVPIKPAPLPLSPGK 91.969 0.0073951 0 143.41 146.9 0 68.121 67.063 71.956 67.904 352.05 0 145.43 FALSE TRUE FALSE 126.5996972 151.4258149 0 70.89926882 62.1158961 70.58355919 70.52308003 392.125949 0 144.5649759 0.875728692 1.047458514 0 0.490431852 0.429674586 0.488247992 0.487829639 2.712454705 0 1 7.175574259 K(ac)LVWIPSER ddPTM_HeLa_CUDC101_4h_R1 1 KLVWIPSER 9 1 P35580;P35580-5;P35580-2;P35580-3;P35580-4;E7ERA5 P35580 MYH10 Myosin-10 0 1 K(1)LVWIPSER 99.139 0.013136 270260 120.89 0 0 0 60.759 68.98 0 0 0 0 FALSE TRUE FALSE 106.7194575 0 0 0 56.27692962 67.66432143 0 0 0 0 0 K(ac)LVWVPSDK ddPTM_HeLa_CUDC101_4h_R1 1 KLVWVPSDK 9 1 P35579;B1AH99;Q5BKV1 P35579 MYH9 Myosin-9 0 1 K(1)LVWVPSDK 111.06 0.0039182 5372300 8156.3 3781.3 2864.5 2864.4 7720.1 7191.3 8223.6 6215.4 7212.7 4332.5 FALSE TRUE FALSE 7200.230878 3897.797371 3019.363535 2981.222613 7150.603604 7054.137934 8540.787007 6922.936012 6915.389453 4306.730097 1.671855611 0.905047979 0.701080278 0.692224157 1.66033242 1.6379336 1.983125669 1.607469207 1.605716935 1 12.0723772 -5.55207566 24.82952819 1.198942736 1.747248242 0.44365671 0.332689187 175.9602639 149638.9317 0.057081659 0.114164635 2.80E-06 5.55207566 0.548305506 K(ac)LYVSNLGIGHTR ddPTM_HeLa_CUDC101_4h_R1 2 KLYVSNLGIGHTR 13 1 D6RCC8;Q06203 D6RCC8 PPAT Amidophosphoribosyltransferase 0 1 ; K(1)LYVSNLGIGHTR;K(1)LYVSNLGIGHTR 162.88 3.38E-05 7203400 2631.4 1623.49 1289.21 1221.7 3621 2472.3 2527.8 2371 2416.1 1662.47 FALSE TRUE FALSE 2322.951281 1673.507803 1358.908592 1271.526207 3353.886044 2425.144997 2625.298093 2640.905056 2316.507335 1652.581555 1.405650011 1.012662763 0.822294421 0.769418128 2.029482923 1.467488845 1.588604257 1.598048247 1.401750691 1 10.69050575 -5.763053801 24.99999971 1.12395383 1.650497541 0.592622325 0.241800062 28.17915658 436376.9821 0.038728292 0.072986679 1.73E-06 5.763053801 0.526543711 K(ac)NNK(ac)K(ac)TSK ddPTM_HeLa_CUDC101_4h_R1 1 KNNKKTSK 8 3 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 3 K(1)NNK(1)K(1)TSK 77.379 0.018877 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 K(ac)QLATK(ac)AAR ddPTM_HeLa_CUDC101_4h_R1 2 KQLATKAAR 9 2 K7EK07;P84243;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;K7EP01;Q6NXT2;Q71DI3;P68431;Q5TEC6 K7EK07;Q71DI3 H3F3B;H3F3A;H3F3C;HIST2H3A;HIST1H3A;HIST2H3PS2 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1 0 2 ; K(1)QLATK(1)AAR;K(1)QLATK(1)AAR 182.39 0.00029284 3398200000 6254.9 2572.48 614.07 7858.4 3756.94 7622 5299.8 1913.6 128.089 194.296 FALSE TRUE FALSE 5521.710104 2651.73506 647.2684817 8178.899519 3479.798021 7476.623049 5504.215061 2131.436489 122.8091172 193.1403188 28.58911148 13.72957794 3.351286183 42.3469298 18.01694252 38.7108352 28.49852945 11.03568899 0.635854378 1 7.593505553 -9.342932667 0.852592582 6.28E-13 23.80153699 0.370298326 11.53334659 0.635877886 0.749992564 10.2991535 2.161572298 4.54E-10 9.342932667 23.80153699 SQAPLESSLDSLGDVFLDS(ph)GRK ddPTM_HeLa_CUDC101_4h_R1 2 SQAPLESSLDSLGDVFLDSGRK 22 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 SQAPLES(0.001)S(0.001)LDS(0.003)LGDVFLDS(0.996)GRK;SQAPLESSLDSLGDVFLDS(1)GRK ; 117.22 1.53E-06 43622000 2907.3 2962.5 2743.1 2595.7 3513.7 3004.3 2515.1 877.55 2792.7 2986.1 TRUE FALSE FALSE 2566.510701 3053.771114 2891.400283 2701.563866 3254.501351 2946.997983 2612.10825 977.4467448 2677.583724 2968.338544 0.864628701 1.028781275 0.974080362 0.910126599 1.096405044 0.992810604 0.879990005 0.329290858 0.902047958 1 11.53543993 -4.263131596 3.543850434 0.956512071 0.256236821 0.896708561 0.064812531 0.072396301 1.595419623 0.010189383 0.134372994 5.46E-05 4.263131596 -0.700275251 down SQEDEIS(ph)SPVNK ddPTM_HeLa_CUDC101_4h_R1 2 SQEDEISSPVNK 12 0 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 SQEDEIS(0.5)S(0.5)PVNK;SQEDEIS(0.5)S(0.5)PVNK ; 241.76 1.26E-43 53161000 13211.1 9879.4 8674.9 8536.3 10272.8 10165.2 7568.5 2568.5 9400.5 10934.7 TRUE FALSE FALSE 11662.51488 10183.7726 9143.891334 8884.447211 9514.99601 9971.315746 7860.41958 2860.887658 9013.007411 10869.65992 1.072942021 0.936898917 0.841230674 0.817362022 0.875372006 0.917353056 0.723152301 0.263199371 0.829189458 1 13.40801918 -4.263114018 1.158046613 0.992236937 2.14E-79 0.767144617 0.101444664 0.520962809 0.562906613 0.015974565 0.624216219 5.46E-05 4.263114018 -0.992236937 down K(ac)SAPSTGGVK(ac)KPHR ddPTM_HeLa_CUDC101_4h_R1 2 KSAPSTGGVKKPHR 14 3 K7EK07;P84243;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;K7EP01 K7EK07 H3F3B;H3F3A Histone H3;Histone H3.3 0 2 ; K(1)SAPSTGGVK(0.5)K(0.5)PHR;K(1)SAPSTGGVK(0.5)K(0.5)PHR 95.183 0.0078484 22168000 11087.5 9558.8 7559.7 14606.7 18559.8 18917.2 18894.9 11394.4 3839.1 3916.5 FALSE TRUE FALSE 9787.840058 9853.295298 7968.400249 15202.42436 17190.68053 18556.38593 19623.68262 12691.49244 3680.850673 3893.204484 2.514083218 2.530895908 2.046745883 3.904861516 4.415560652 4.766352758 5.040496255 3.259909026 0.945455264 1 11.92674241 -6.737167583 0.377653476 1.128089079 4.921477907 0.780001872 0.659026134 0.459096542 0.155863959 0.354108276 0.672158342 1.83E-07 6.737167583 3.793388828 K(ac)SSTVPGK ddPTM_HeLa_CUDC101_4h_R1 1 KSSTVPGK 8 1 A0A0A0MS79;O14513 A0A0A0MS79 NCKAP5 Nck-associated protein 5 0 1 K(1)SSTVPGK 71.501 0.034124 0 760.18 561.5 540.56 579.21 470.03 702.13 466.03 395.2 439.07 644.52 FALSE TRUE FALSE 671.0728528 578.7991495 569.7843087 602.8326874 435.3568233 688.7380401 484.0049332 440.1879705 420.9713488 640.6863664 1.047428021 0.903404817 0.889334218 0.94091699 0.679516291 1.075000306 0.75544753 0.687056872 0.657063067 1 9.32347448 -2.546640212 0.25238932 1.037186846 4.35E-19 0 0.157938863 14.74688206 0.363995971 0.059941015 5.596559066 0.002840271 2.546640212 -1.037186846 K(ac)STGGK(ac)APR ddPTM_HeLa_CUDC101_4h_R1 2 KSTGGKAPR 9 2 K7EK07;P84243;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;K7EP01;Q6NXT2;Q71DI3;P68431;Q5TEC6;Q16695 K7EK07;Q71DI3 H3F3B;H3F3A;H3F3C;HIST2H3A;HIST1H3A;HIST2H3PS2;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 2 ; K(1)STGGK(1)APR;K(1)STGGK(1)APR 117.02 0.0039028 738080000 7057.2 5247.7 1504.23 11840.3 7493.9 10580.5 7684.3 3005 243.466 12.815 FALSE TRUE FALSE 6229.965714 5409.375417 1585.553224 12323.19861 6941.089927 10378.69459 7980.686025 3347.077053 233.4302284 12.73877581 489.0552913 424.6385601 124.4666872 967.376991 544.8788824 814.7324944 626.4876739 262.7471512 18.32438469 1 3.671154737 -9.921345683 2.180940833 2.50E-05 200 0 375.6867903 1.228029566 10.64731999 333.365005 64.7000354 1.20E-10 9.921345683 199.999975 K(ac)TSK(ac)NK(ac)SSLSR ddPTM_HeLa_CUDC101_4h_R1 2 KTSKNKSSLSR 11 3 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 3 ; K(1)TSK(1)NK(1)SSLSR;K(1)TSK(1)NK(1)SSLSR 179.67 1.19E-36 3592800 1433.09 898.71 462.64 446.29 387.37 441.77 522.47 202.265 622.86 386.35 FALSE TRUE FALSE 1265.105363 926.3981899 487.6517178 464.4916352 358.7944868 433.3439733 542.6218429 225.29003 597.1854472 384.051973 3.294099371 2.412168808 1.269754492 1.209449939 0.934234198 1.128347213 1.412886487 0.58661339 1.554959977 1 8.585157751 -6.66520912 5.384513658 2.137096551 1.089251578 0.398076238 0.587666938 0.231049675 10.55764797 0.139560499 0.197807963 2.16E-07 6.66520912 -1.047844974 K(ac)YEEIDNAPEER ddPTM_HeLa_CUDC101_4h_R1 2 KYEEIDNAPEER 12 1 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 1 ; K(1)YEEIDNAPEER;K(1)YEEIDNAPEER 176.87 9.88E-07 4388200 2868.8 1660.75 1260.8 1340.33 2432.5 2369.5 2099.4 2167.3 1852.42 1803 FALSE TRUE FALSE 2532.523613 1711.915739 1328.962662 1394.994451 2253.059321 2324.305735 2180.374561 2414.016671 1776.062464 1792.275676 1.413021248 0.955163183 0.741494559 0.778336988 1.25709418 1.296846108 1.216539727 1.346900315 0.99095384 1 10.80757684 -5.55551921 24.99869019 1.111829123 1.279278956 0.217793903 0.199889884 370.2573802 283571.7157 0.037128658 0.074257742 2.78E-06 5.55551921 0.167449833 K(ac)YEFGESDLR ddPTM_HeLa_CUDC101_4h_R1 1 KYEFGESDLR 10 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6I5;A0A2R8Y542 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 1 K(1)YEFGESDLR 87.568 0.028684 809050 357.98 0 130.7 128.87 512.37 166.15 373.26 207.4 186.23 179.05 FALSE TRUE FALSE 316.0181271 0 137.7660373 134.1258756 474.5734859 162.9809656 387.6567632 231.0095777 178.5535206 177.9850026 1.775532334 0 0.774031718 0.753579648 2.666367834 0.915700554 2.178030494 1.297915972 1.00319419 1 7.475611872 -5.815612578 24.9999944 1.173259634 1.7334457 0.250155122 0.637191507 139.0687275 64177.27336 0.099022752 0.179494107 1.53E-06 5.815612578 0.560186065 K(ac)YHQRPTFR ddPTM_HeLa_CUDC101_4h_R1 2 KYHQRPTFR 9 2 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 1 ; K(1)YHQRPTFR;K(1)YHQRPTFR 68.016 0.029461 2105400 611.7 334.56 310.6 351.83 574.95 692.24 386.543 256.41 501.9 221.071 FALSE TRUE FALSE 539.9974533 344.867397 327.3919755 366.1791481 532.537084 679.0366754 401.452093 285.598678 481.2114696 219.7560599 2.457258533 1.569319168 1.489797258 1.666298296 2.423310121 3.089956544 1.82680784 1.299616849 2.189752901 1 7.779759139 -5.77682143 23.94459601 1.676375199 2.202559835 0.11760637 0.563017954 240.7635814 374786.8168 0.101581746 0.184690765 1.67E-06 5.77682143 0.526184635 K(ac)YVIYIER ddPTM_HeLa_CUDC101_4h_R1 2 KYVIYIER 8 1 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;J3QRC4;J3KS10 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 0 1 ; K(1)YVIYIER;K(1)YVIYIER 116.37 0.0024348 16558400 3159.4 2923.5 2634.7 2783.3 2934.3 2695.7 2493.73 2370.22 2674.05 2015.09 FALSE TRUE FALSE 2789.059921 3013.56957 2777.139852 2896.815004 2717.842535 2644.284014 2589.914001 2640.036264 2563.824527 2003.104155 1.392368896 1.504449762 1.386418097 1.446162945 1.356815385 1.32009312 1.292950242 1.317972536 1.27992572 1 10.96802172 -9.107691818 0.847268256 0.996816962 1.377706901 0.355058219 0.103076721 0.203162165 0.261213128 0.048393159 0.013827671 7.80E-10 9.107691818 0.380889939 ERPSS(ph)AIYPSDSFR ddPTM_HeLa_CUDC101_4h_R1 2 ERPSSAIYPSDSFR 14 1 Q92974-2;Q92974;V9GYM8;A0A5F9ZI21;Q92974-3;V9GYF5;V9GYG5;V9GZ14 Q92974-2 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 ERPS(0.24)S(0.758)AIYPSDS(0.001)FR;ERPS(0.23)S(0.77)AIYPSDSFR ; 160.63 0.00022909 50071000 4715.3 5173.6 5470.4 5347.3 6640.8 6678.4 5114.8 3706.3 4124.2 4407 TRUE FALSE FALSE 4162.579682 5332.992484 5766.146371 5565.386007 6150.921414 6551.020647 5312.079549 4128.210211 3954.19873 4380.786968 0.950189934 1.217359466 1.316235282 1.270407817 1.404067684 1.495398132 1.212585681 0.942344433 0.902622921 1 12.09697434 -7.164598872 3.899025938 0.976271609 1.285286176 0.521240032 0.137815729 0.141458157 3.919584288 0.023473097 0.028851615 6.85E-08 7.164598872 0.309014568 FHS(ph)PSTTWSPNK ddPTM_HeLa_CUDC101_4h_R1 2 FHSPSTTWSPNK 12 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 FHS(0.732)PS(0.265)T(0.003)T(0.001)WSPNK;FHS(0.492)PS(0.492)T(0.013)T(0.003)WSPNK ; 143.42 0.0011356 35805000 5085.3 3387.1 2918.3 2836.1 3750.8 3507.2 3415.1 2894 3478 4157.6 TRUE FALSE FALSE 4489.208843 3491.452536 3076.072125 2951.768417 3474.110957 3440.306003 3546.821551 3223.441262 3334.635368 4132.87041 1.086220568 0.844800874 0.744294357 0.714217511 0.840604861 0.832425327 0.858198104 0.779952174 0.806856987 1 12.01292841 -7.164125562 4.741304196 1.040519327 0.798079 0.341723065 0.087068973 0.066981975 2.499432957 0.009083047 0.011161998 6.85E-08 7.164125562 -0.242440327 SSGGSGGGPLSHFYSGS(ph)PTSYFTSGLQAGLK ddPTM_HeLa_CUDC101_4h_R1 1 SSGGSGGGPLSHFYSGSPTSYFTSGLQAGLK 31 0 A0A087WZ13;Q8IY67-2;E9PAU2;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 SSGGSGGGPLSHFY(0.009)S(0.043)GS(0.526)PT(0.137)S(0.137)Y(0.037)FT(0.088)S(0.022)GLQAGLK 83.467 2.61E-07 6577000 910.4 605.43 270.96 308.43 860.02 856.66 611.5 350.09 901.14 782.24 TRUE FALSE FALSE 803.6842921 624.0825807 285.6089172 321.0091085 796.578038 840.3206378 635.0857598 389.9428305 863.9946278 777.5872017 1.033561625 0.802588545 0.367301464 0.41282715 1.024422774 1.080677043 0.816738957 0.501477943 1.11112249 1 9.602860664 -7.163659927 4.601858544 1.015681218 0.71554337 0.315675149 0.225755253 0.240788888 8.590974186 0.040279999 0.049507151 6.86E-08 7.163659927 -0.300137847 KAAAPAPEEEMDECEQALAAEPK ddPTM_HeLa_CUDC101_4h_R1 5 KAAAPAPEEEMDECEQALAAEPK 23 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 ;;;; ;;;; 121.25 3.07E-07 73109000 14259.5 13104.9 13969.3 13296.77 16604.8 14944.2 13627.66 14649.41 14244.9 12922.25 FALSE FALSE TRUE 12588.02303 13508.64644 14724.52261 13839.06975 15379.89699 14659.16428 14153.28341 16317.03962 13657.71919 12845.38788 0.979964415 1.051633984 1.146288672 1.077357094 1.197308881 1.141200594 1.101818298 1.270264454 1.063239142 1 13.64896283 -6.83658934 1.545844371 0.989368336 1.158156138 0.577400501 0.054710719 0.140153016 0.675430313 0.008167851 0.011575491 1.46E-07 6.83658934 0.168787801 TKPPRPDS(ph)PATTPNISVK ddPTM_HeLa_CUDC101_4h_R1 1 TKPPRPDSPATTPNISVK 18 2 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 0 T(0.001)KPPRPDS(0.989)PAT(0.008)T(0.002)PNISVK 91.583 0.0038804 84960000 3275.1 2328 2215.1 2095.4 2090.8 1964.6 2222.8 2373.9 2547.1 3060.3 TRUE FALSE FALSE 2891.197743 2399.722921 2334.855006 2180.859469 1936.565849 1927.128528 2308.534141 2644.13518 2442.10746 3042.097199 0.950396241 0.788838345 0.767514926 0.716893421 0.636589077 0.633486836 0.758862715 0.869181688 0.802771016 1 11.57085053 -7.163649676 1.525646772 0.98327689 0.717740733 0.441331647 0.085565505 0.130650476 0.581329206 0.012657562 0.015620596 6.86E-08 7.163649676 -0.265536156 DVYLS(ph)PRDDGYSTK ddPTM_HeLa_CUDC101_4h_R1 3 DVYLSPRDDGYSTK 14 1 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DVYLS(0.999)PRDDGYS(0.001)TK;DVYLS(0.997)PRDDGYS(0.001)T(0.002)K;DVYLS(1)PRDDGYSTK ;; 144.68 0.00085685 79231000 2896.9 4179.98 4330.1 3935.69 5944.9 4290.5 4296.88 4181.12 3892.02 3370.88 TRUE FALSE FALSE 2557.329773 4308.760229 4564.198304 4096.20445 5506.356571 4208.665861 4462.612101 4657.0818 3731.589288 3350.829856 0.763192965 1.285878548 1.362109836 1.222444775 1.643281458 1.256007032 1.331793106 1.389829386 1.113631384 1 11.71030272 -7.161935446 5.061798779 0.888690809 1.36287811 0.624522543 0.138639177 0.082978016 3.356592799 0.022018979 0.027057185 6.89E-08 7.161935446 0.474187301 SQIDVALS(ph)QDSTYQGER ddPTM_HeLa_CUDC101_4h_R1 3 SQIDVALSQDSTYQGER 17 0 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 1 0 SQIDVALS(0.934)QDS(0.066)TYQGER;SQIDVALS(0.934)QDS(0.048)T(0.018)YQGER;SQIDVALS(0.978)QDS(0.019)T(0.002)YQGER ;; 255.69 9.65E-58 16542900 5723.65 5842.3 5215.4 5795.1 7648.05 6788.86 5747.47 4373.71 5696.46 4851.13 TRUE FALSE FALSE 5052.732423 6022.294338 5497.3603 6031.449227 7083.868589 6659.373807 5969.151843 4871.595467 5461.649508 4822.275263 1.04779013 1.248849145 1.139993053 1.250747603 1.468988849 1.380960945 1.237828933 1.01022758 1.132587671 1 12.23549829 -7.160897901 1.163427773 1.013115453 1.275920171 0.299702457 0.123599642 0.285085039 0.747371337 0.024539628 0.0305356 6.90E-08 7.160897901 0.262804718 GIPLATGDTS(ph)PEPELLPGAPLPPPKEVINGNIK ddPTM_HeLa_CUDC101_4h_R1 2 GIPLATGDTSPEPELLPGAPLPPPKEVINGNIK 33 1 O75821;K7EL20;K7ENA8;K7ER90;K7EL60 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 0 GIPLAT(0.026)GDT(0.235)S(0.739)PEPELLPGAPLPPPKEVINGNIK;GIPLAT(0.032)GDT(0.249)S(0.719)PEPELLPGAPLPPPKEVINGNIK ; 76.267 1.33E-06 80612000 10877.5 11937.8 11356.3 12003.4 15267.6 12158 13027.1 14204.9 11979.7 7312 TRUE FALSE FALSE 9602.455939 12305.58947 11970.25593 12492.95054 14141.33957 11926.10641 13529.55961 15821.9284 11485.8917 7268.507899 1.321104149 1.69300077 1.646865642 1.718777871 1.945562936 1.640791559 1.86139436 2.176778043 1.580226899 1 12.82744352 -7.160852485 0.350879225 0.945374504 2.046038555 0.494128003 0.219341051 0.284714793 0.100804463 0.091050986 0.115383277 6.90E-08 7.160852485 1.100664051 IY(ph)KQYSPRRR ddPTM_HeLa_CUDC101_4h_R1 1 IYKQYSPRRR 10 3 A0A087X277;Q07890-2;Q07890 A0A087X277 SOS2 Son of sevenless homolog 2 1 0 IY(0.773)KQY(0.209)S(0.017)PRRR 51.276 0.033403 57032000 1229.9 1313.1 1501.4 1560.1 1772.8 1516.2 1524.7 1665 1599.2 892.14 TRUE FALSE FALSE 1085.732986 1353.555055 1582.570225 1623.727621 1642.024076 1487.281011 1583.50819 1854.53687 1533.280299 886.8335116 1.224280513 1.52627865 1.784517843 1.830927226 1.851558443 1.677069023 1.785575499 2.091189435 1.728938159 1 9.792519477 -7.160518186 1.087704003 1.067989735 1.851543075 0.417564654 0.232798548 0.090640439 0.208838009 0.022682865 0.028302166 6.91E-08 7.160518186 0.783553341 LLEDGEDFNLGDALDSS(ph)NSMQTIQK ddPTM_HeLa_CUDC101_4h_R1 2 LLEDGEDFNLGDALDSSNSMQTIQK 25 0 P05783 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 LLEDGEDFNLGDALDS(0.057)S(0.886)NS(0.057)MQTIQK;LLEDGEDFNLGDALDS(0.214)S(0.722)NS(0.064)MQTIQK ; 166.03 7.48E-12 20504300 6284.1 5047.7 4544.9 4903.2 4928.5 5391.5 4864.3 4416.1 5058.5 5706.2 TRUE FALSE FALSE 5547.487324 5203.213654 4790.611042 5103.173689 4564.934374 5288.66612 5051.91768 4918.810974 4849.986489 5672.259269 0.978003131 0.917308855 0.844568419 0.89967215 0.804782391 0.932373834 0.89063589 0.86716963 0.855036108 1 12.46970776 -7.159589222 2.517143993 0.990750492 0.874697266 0.119733638 0.05369047 0.102691578 1.252487222 0.005370474 0.006609296 6.92E-08 7.159589222 -0.116053226 KAAVTPGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 KAAVTPGKK 9 2 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 KAAVTPGK(1)K 76.843 0.030495 0 6665.4 2426.5 16797 20521 10320 9899.2 13446 5130.8 4011.8 5925.4 FALSE TRUE FALSE 5884.091916 2501.257589 17705.09663 21357.93508 9558.71416 9710.389253 13964.61672 5714.869533 3846.431906 5890.155457 0.998970563 0.424650522 3.005879345 3.626039284 1.622828842 1.648579452 2.370840095 0.970240866 0.653027231 1 12.52409 -6.768272823 24.99999353 0.956385536 2.227341443 0.479114849 0.72403448 116.3597594 425699.1989 0.116575319 0.15511302 1.71E-07 6.768272823 1.270955907 KADGPPGPHDGGDRPSAEAR ddPTM_HeLa_CUDC101_4h_R1 2 KADGPPGPHDGGDRPSAEAR 20 2 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 0 0 ; ; 64.275 0.0056596 2659900 3150.8 2756.94 2802.42 2938.9 2996.82 2772.25 2710.4 2183.59 3129.2 2693.72 FALSE FALSE TRUE 2781.468 2841.878054 2953.927302 3058.761045 2775.750559 2719.37395 2814.941036 2432.161059 3000.213052 2677.697634 1.038753579 1.061314025 1.103159395 1.142310098 1.036618371 1.015564235 1.051254257 0.908303099 1.120445047 1 11.38677734 -4.257777467 24.08055321 1.038119863 0.908303014 0.393503212 0.049536049 176.5881696 1161145.996 0.006856832 0.067173789 5.52E-05 4.257777467 -0.129816849 KADGYNQPDSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 KADGYNQPDSKR 12 2 O60506-2;O60506;O43390;B4DT28;O43390-4;O43390-3;O43390-2 O60506-2;O43390 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R 0 1 KADGYNQPDSK(1)R 107.93 0.0089696 1071600 354.79 424.3 504.88 654.97 442.05 396.44 415.32 343.21 496.82 532.42 FALSE TRUE FALSE 313.202054 437.3721801 532.17534 681.6825076 409.4408522 388.8785675 431.3390315 382.2796391 476.3408693 529.2531422 0.59178119 0.826395056 1.005521361 1.288008428 0.773620069 0.734768557 0.814995693 0.722300179 0.900024641 1 9.047814119 -5.556779589 24.99798225 0.858107531 0.761629884 0.107912856 0.174782094 540.561652 398600.5657 0.032348031 0.0646963 2.77E-06 5.556779589 -0.096477647 SVS(ph)PTTEMVSNESVDYR ddPTM_HeLa_CUDC101_4h_R1 2 SVSPTTEMVSNESVDYR 17 0 P08581;P08581-2 P08581 MET Hepatocyte growth factor receptor 1 0 S(0.006)VS(0.858)PT(0.131)T(0.004)EMVSNESVDYR;S(0.04)VS(0.726)PT(0.168)T(0.062)EMVS(0.003)NESVDYR ; 152.25 0.0001002 23247000 3663.5 2117 1850.12 2216.33 1804.01 1953.56 2233.68 1842.27 2113.81 2702.1 TRUE FALSE FALSE 3234.070084 2182.222261 1950.143084 2306.721517 1670.931776 1916.299098 2319.833786 2051.98657 2026.677857 2686.027789 1.204034484 0.81243473 0.726032356 0.858785425 0.622082833 0.713432343 0.863667083 0.763948377 0.75452602 1 11.39125852 -7.159409255 5.461463871 1.095924753 0.760534776 0.271357211 0.134621638 0.088179053 3.890566934 0.016406581 0.020155481 6.93E-08 7.159409255 -0.335389977 TGSGS(ph)PFAGNS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 T(0.038)GS(0.196)GS(0.766)PFAGNS(1)PAR;T(0.059)GS(0.442)GS(0.498)PFAGNS(1)PAR ; 184.92 5.74E-10 259920000 12895.8 9508 8170.3 8355.3 8848.2 9905.8 8516 8168.5 11705.4 11915.6 TRUE FALSE FALSE 11384.17387 9800.93021 8612.011132 8696.065249 8195.485914 9716.863369 8844.464973 9098.369022 11222.89846 11844.72548 0.961117579 0.827451022 0.727075621 0.734171954 0.691910161 0.820353615 0.746700714 0.768136757 0.947501778 1 13.53195714 -7.158011504 2.304134601 0.984337895 0.747936374 0.894186886 0.033967097 0.056655638 0.577927244 0.005807635 0.007153244 6.95E-08 7.158011504 -0.236401521 LNSSSSSSSNSSNEREDFDSTSSSSST(ph)PPLQPR ddPTM_HeLa_CUDC101_4h_R1 1 LNSSSSSSSNSSNEREDFDSTSSSSSTPPLQPR 33 1 A0A669KAX4;Q13620-1;Q13620;A0A669KAU9;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 1 0 LNSSSSSSSNSSNEREDFDS(0.077)T(0.077)S(0.077)S(0.077)S(0.13)S(0.13)S(0.13)T(0.3)PPLQPR 83.127 1.59E-08 23467000 757.34 512.12 381.53 338.51 779.39 592.7 388.72 451.98 564.35 619.67 TRUE FALSE FALSE 668.5657533 527.8978102 402.1566659 352.315901 721.8959525 581.395235 403.7130606 503.4315762 541.0872541 615.9841753 1.085361897 0.85699898 0.652868502 0.571956091 1.17193912 0.94384768 0.655395182 0.817280048 0.878410965 1 9.266749478 -7.157993001 4.953421445 1.040025262 0.804852557 0.174418187 0.168649697 0.211417486 8.162504899 0.027758073 0.03412594 6.95E-08 7.157993001 -0.235172705 ESAAPAAAPTAEAPPPS(ph)VVTRPEPQALPSPAIR ddPTM_HeLa_CUDC101_4h_R1 1 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR 33 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 0 ESAAPAAAPT(0.001)AEAPPPS(0.394)VVT(0.394)RPEPQALPS(0.211)PAIR 65.765 0.00014689 124490000 2337.3 1685.4 1677.5 1734.3 1802.1 1977.8 1810.7 1301.5 2106.4 1763.3 TRUE FALSE FALSE 2063.325237 1737.325176 1768.190724 1805.03225 1669.162673 1940.07676 1880.539306 1449.657499 2019.5733 1752.811813 1.177151604 0.991164689 1.008773852 1.029792381 0.95227717 1.106836881 1.072870055 0.827046856 1.152190603 1 10.7754554 -7.157602534 23.53437886 1.083695926 1.005262162 0.250921177 0.084083341 32.5601886 7365.528809 0.015361232 0.018813591 6.96E-08 7.157602534 -0.078433764 KADYQAVDDEIEANLEEFDISEDDIDDGFRR ddPTM_HeLa_CUDC101_4h_R1 2 KADYQAVDDEIEANLEEFDISEDDIDDGFRR 31 2 P17655;P17655-2 P17655 CAPN2 Calpain-2 catalytic subunit 0 0 ; ; 155.91 4.00E-17 90631000 5778.6 4641 4418.14 4394.59 6494.1 5513.8 4701.7 4949.8 5199 4040.4 FALSE FALSE TRUE 5101.241268 4783.983709 4656.998013 4573.820375 6015.043181 5408.633452 4883.046144 5513.265224 4984.695019 4016.367521 1.270113166 1.191121999 1.159504948 1.13879528 1.497632662 1.34664804 1.215786682 1.372699385 1.241095341 1 11.97167558 -13.31064195 0.159335869 1.77E-11 1.365694897 0.15024169 0.121404933 33.81005999 0.382880921 10.62414278 0.199734422 4.89E-14 13.31064195 1.365694897 FS(ph)YSKNETY(ph)QLFLSY(ph)SSKK ddPTM_HeLa_CUDC101_4h_R1 1 FSYSKNETYQLFLSYSSKK 19 2 P02748 P02748 C9 Complement component C9;Complement component C9a;Complement component C9b 3 0 FS(0.434)Y(0.081)S(0.464)KNET(0.182)Y(0.834)QLFLS(0.068)Y(0.675)S(0.216)S(0.045)KK 52.541 0.018956 16971000 385.33 417.09 460.07 443.74 349.01 489.08 372.89 480.85 349.42 396.31 TRUE FALSE FALSE 340.1622015 429.9400485 484.9427758 461.8376352 323.2642276 479.7516139 387.2724922 535.5880203 335.0167597 393.9527305 0.863459434 1.09134933 1.230966911 1.172317386 0.820566029 1.217789792 0.983043046 1.359523564 0.85039837 1 8.621878724 -7.156911234 6.094973962 0.935771905 1.118946826 0.323957526 0.144026801 0.232470748 11.58952805 0.022877824 0.028088432 6.97E-08 7.156911234 0.183174921 KAEAAASALADADADLEER ddPTM_HeLa_CUDC101_4h_R1 1 KAEAAASALADADADLEER 19 1 M0R1T5;O43633 M0R1T5 CHMP2A Charged multivesicular body protein 2a 0 0 124.82 5.19E-05 8964500 2693.3 2809.2 2310.6 2384.5 3059.1 2605.7 2862.4 2450.5 3037.3 2637.7 FALSE FALSE TRUE 2377.595457 2895.748122 2435.518025 2481.750217 2833.436288 2556.000614 2972.803727 2729.455015 2912.101208 2622.010843 0.906783228 1.104399751 0.928874124 0.946506466 1.080634848 0.974824578 1.133787732 1.040977775 1.1106366 1 11.35645794 -5.394570784 0.977811771 0.963746227 1.081989109 0 0.080094932 0.622988826 1.030435134 0.01085285 0.050772789 4.03E-06 5.394570784 0.118242883 KAEAAVVAVAEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 KAEAAVVAVAEKR 13 2 A0A087WYP2;Q8IZQ5 A0A087WYP2 C11orf31;SELH Selenoprotein H 0 1 ; KAEAAVVAVAEK(1)R;KAEAAVVAVAEK(1)R 156.17 0.00014631 35967000 14042.3 15025.2 14984.7 15660.4 16605.3 16346 16418.8 16566.4 9706.3 11792.6 FALSE TRUE FALSE 12396.28288 15488.1086 15794.81821 16299.0988 15380.3601 16034.22728 17052.07862 18452.25201 9306.202206 11722.45709 1.057481617 1.321233977 1.347398253 1.390416589 1.312042346 1.367821367 1.454650547 1.574094225 0.793878121 1 13.51698738 -7.170773288 1.557783403 1.017922258 1.410689809 0.809779689 0.098022639 0.091959722 0.42609433 0.013312178 0.016375627 6.75E-08 7.170773288 0.392767551 EAAEPLSEPKEDQEAAELLS(ph)EPEEESER ddPTM_HeLa_CUDC101_4h_R1 2 EAAEPLSEPKEDQEAAELLSEPEEESER 28 1 A0A0A0MTR7;A0A0A0MTC1;Q63HN8;Q63HN8-4 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 1 0 EAAEPLSEPKEDQEAAELLS(0.999)EPEEES(0.001)ER;EAAEPLSEPKEDQEAAELLS(1)EPEEESER ; 129.72 1.35E-14 50915000 4382.8 2603.77 2495.79 2586.1 3236.4 3186.5 2719 2032.6 2343.9 2755.83 TRUE FALSE FALSE 3869.054828 2683.989067 2630.719957 2691.572336 2997.65722 3125.722822 2823.872741 2263.982968 2247.28345 2739.438201 1.412353389 0.97975894 0.960313672 0.982527124 1.094259845 1.141008701 1.030821845 0.826440606 0.820344642 1 11.41966434 -7.156508844 23.52134465 1.19482499 1.009779672 0 0.169710931 24.07114694 5383.483182 0.028225842 0.034569454 6.97E-08 7.156508844 -0.185045318 S(ph)LSEGLYPYPPEMGKPATGDFGYR ddPTM_HeLa_CUDC101_4h_R1 1 SLSEGLYPYPPEMGKPATGDFGYR 24 1 F8VV64;Q63HR2-2;Q63HR2-6;Q63HR2;Q63HR2-4;Q63HR2-5 F8VV64 TNS2 Tensin-2 1 0 S(0.534)LS(0.466)EGLYPYPPEMGKPATGDFGYR 72.474 0.00035414 8203900 1394.2 1087.6 847.28 998.37 1132.3 1054.3 1049.6 1265 1019.1 1223.2 TRUE FALSE FALSE 1230.773989 1121.107667 893.0865197 1039.087844 1048.772485 1034.190984 1090.083424 1409.002487 977.0922667 1215.924352 1.012212633 0.922020901 0.734491844 0.854566193 0.862531031 0.850538919 0.896505956 1.158791239 0.803579816 1 10.24783776 -7.155284061 4.574732836 1.005659839 0.884064001 0 0.119073345 0.245597085 8.442301552 0.016548121 0.020360838 6.99E-08 7.155284061 -0.121595838 NSSSAGS(ph)GSGDPSEGLPR ddPTM_HeLa_CUDC101_4h_R1 1 NSSSAGSGSGDPSEGLPR 18 0 H0YLQ1;H0YLF1;H0YN92;H0YNS2;H0YM86;H0YLB2;H0YKR8;H0YL29;H0YMN6;H0YL64;H0YMF7;H0YLH4;H0YM56;H0YN15;H0YNT0;H0YMZ4;H0YN21;H0YNK2;H0YN03;H0YLX7;Q8TEB1-2;Q8TEB1 H0YLQ1 DCAF11 DDB1- and CUL4-associated factor 11 1 0 NSS(0.004)S(0.024)AGS(0.757)GS(0.064)GDPS(0.151)EGLPR 80.733 0.0087939 6551500 1906.3 1749.6 1968.3 2202.4 2184.1 2007.3 2099.1 1703.7 2213.2 1496 TRUE FALSE FALSE 1682.846404 1803.503102 2074.712252 2292.223392 2022.983294 1969.014097 2180.06299 1897.642321 2121.970959 1487.101725 1.131628304 1.212763775 1.395138084 1.541403222 1.360353001 1.32406147 1.465981078 1.276067594 1.426917152 1 10.53828762 -7.155219771 1.381866628 1.048820892 1.400651168 0.170537443 0.141073074 0.124571855 0.456457866 0.015332024 0.019027252 6.99E-08 7.155219771 0.351830276 LTPS(ph)PDIIVLSDNEASSPR ddPTM_HeLa_CUDC101_4h_R1 4 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LT(0.001)PS(0.999)PDIIVLSDNEASSPR;LT(0.123)PS(0.877)PDIIVLSDNEASSPR;LT(0.001)PS(0.999)PDIIVLSDNEASSPR;LT(0.001)PS(0.992)PDIIVLS(0.005)DNEAS(0.001)S(0.001)PR ;;; 216.16 8.13E-25 56173800 4644.27 4824.4 5310.95 5297.68 6306.93 5072.98 4242.17 4786.57 4055.83 4259.89 TRUE FALSE FALSE 4099.875711 4973.034046 5598.076022 5513.742289 5841.680339 4976.221359 4405.791918 5331.453781 3888.646971 4234.551985 0.968195862 1.174394378 1.321999598 1.302083977 1.379527364 1.17514707 1.040438737 1.259036092 0.918313669 1 12.04799363 -7.154438575 3.900254028 0.984873785 1.24263047 0.666001805 0.089456178 0.114217585 3.106358602 0.015740454 0.019387359 7.01E-08 7.154438575 0.257756685 KAEEDAALQAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 KAEEDAALQAKK 12 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;H0YA99;A0A2R8Y4M7;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 0 1 ; KAEEDAALQAK(1)K;KAEEDAALQAK(1)K 141.58 0.00039368 7653700 11126.3 10022.2 10132.3 10462.3 11341.8 10857.7 10764.1 13045.2 9702.2 9124.6 FALSE TRUE FALSE 9822.09198 10330.9721 10680.08279 10888.99782 10505.13801 10650.60746 11179.27494 14530.21284 9302.271209 9070.326473 1.082881858 1.138985695 1.177475013 1.200507815 1.158187419 1.17422537 1.232510756 1.601950369 1.025571818 1 13.14693876 -1 0.355912959 1.039905373 6.760375042 0.815154005 0.067855452 17.24441344 0.214885925 0.020567298 67.44188692 0.1 1 5.720469669 LLSGPSQES(ph)PQTLGK ddPTM_HeLa_CUDC101_4h_R1 2 LLSGPSQESPQTLGK 15 0 E7EVL6;C9JZE3;C9JYJ8;Q9BWE0;Q9BWE0-4 E7EVL6 REPIN1 Replication initiator 1 1 0 LLSGPS(0.067)QES(0.925)PQT(0.008)LGK;LLSGPSQES(0.987)PQT(0.013)LGK ; 158.91 7.48E-05 21587300 4372.8 3828.3 3511.6 3939.9 4398.4 4221.9 3668.8 1610.39 3962.2 3929.3 TRUE FALSE FALSE 3860.227013 3946.245385 3701.447718 4100.586152 4073.938795 4141.374292 3810.306845 1793.710288 3798.876439 3905.928349 0.988299495 1.010322011 0.947648648 1.049836501 1.043014216 1.060279125 0.975518879 0.459227648 0.972592454 1 11.93144977 -4.262627585 5.116831513 1.003579604 0.43463268 0.959671992 0.0336277 0.021242572 1.811899216 0.004581676 0.04245776 5.46E-05 4.262627585 -0.568946924 down ETFAS(ph)DTNEALASLDESQEGHAEAK ddPTM_HeLa_CUDC101_4h_R1 1 ETFASDTNEALASLDESQEGHAEAK 25 0 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 1 0 ET(0.041)FAS(0.733)DT(0.226)NEALASLDESQEGHAEAK 181.33 4.51E-17 10836000 3697.3 2552.6 2476.3 2019.7 2712.6 3140.1 2415 1818.9 2999.1 3123.8 TRUE FALSE FALSE 3263.908099 2631.24258 2610.176268 2102.072096 2512.496902 3080.207824 2508.147359 2025.956224 2875.475829 3105.219499 1.051103827 0.847361219 0.840577057 0.676947989 0.809120548 0.99194528 0.807719828 0.652435754 0.92601371 1 11.60047954 -7.153806235 3.693154189 1.024242136 0.803410036 0.455919767 0.093400282 0.131687742 3.279764103 0.015278589 0.01882529 7.02E-08 7.153806235 -0.2208321 QLS(ph)LPLTQSK ddPTM_HeLa_CUDC101_4h_R1 2 QLSLPLTQSK 10 0 Q9C0I1-3;Q9C0I1-2;Q9C0I1 Q9C0I1-3 MTMR12 Myotubularin-related protein 12 1 0 QLS(0.888)LPLT(0.11)QS(0.002)K;QLS(0.834)LPLT(0.166)QSK ; 134.56 0.0018129 186319000 7823.2 5544.4 4714.7 5090.7 6116.3 6132.8 5765.1 5360.2 5157.3 6041.2 TRUE FALSE FALSE 6906.176355 5715.216392 4969.590943 5298.32075 5665.112734 6015.827058 5987.461838 5970.383501 4944.713911 6005.266674 1.150019929 0.951700683 0.827538761 0.882279012 0.943357396 1.00175852 0.99703513 0.994191237 0.823396225 1 12.5520126 -7.153795809 7.631160271 1.0707291 0.939536819 0 0.099253246 0.216268123 13.76697833 0.013038018 0.015987963 7.02E-08 7.153795809 -0.13119228 WLNSGRGDEASEEGQNGSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 WLNSGRGDEASEEGQNGSSPK 21 1 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;P35611-5 E7EV99 ADD1 Alpha-adducin 1 0 WLNSGRGDEASEEGQNGS(0.354)S(0.646)PK;WLNSGRGDEASEEGQNGS(0.173)S(0.827)PK;WLNSGRGDEASEEGQNGS(0.199)S(0.801)PK ;; 165.16 5.52E-08 130910000 3046.21 3428.83 3635.37 3412.2 4316.2 3139.86 3499.67 4416.3 3706.6 2834.79 TRUE FALSE FALSE 2689.137882 3534.468188 3831.909099 3551.364265 3997.802525 3079.972402 3634.653444 4919.033741 3553.812379 2817.928543 0.95429598 1.254278856 1.359831891 1.260274777 1.418702591 1.092991662 1.289831658 1.745620468 1.26114354 1 11.46041931 -7.153674609 3.529564186 0.977939945 1.342058358 0.298943021 0.179718373 0.135021976 3.117723518 0.02542479 0.031332705 7.02E-08 7.153674609 0.364118413 SSAWAEGGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 SSAWAEGGSPR 11 0 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 0 SSAWAEGGS(1)PR;SSAWAEGGS(1)PR;SSAWAEGGS(1)PR;SSAWAEGGS(1)PR ;;; 137.01 0.001574 114436000 7117.7 6440.7 6672 6976.9 7068.5 6849.4 6211.9 5716.3 6750.4 6433.2 TRUE FALSE FALSE 6283.373996 6639.130333 7032.708502 7261.448139 6547.070837 6718.759107 6451.495064 6367.020486 6472.145655 6394.93504 0.982554781 1.038185735 1.09973103 1.135499906 1.023790046 1.050637585 1.008844503 0.995634896 1.012073714 1 12.64271399 -7.153395318 4.73870472 0.991835532 1.053832824 0.265406546 0.039653087 0.203453167 7.289332845 0.007009695 0.008624341 7.02E-08 7.153395318 0.061997292 VTKNEEPS(ph)EEEIDAPKPK ddPTM_HeLa_CUDC101_4h_R1 3 VTKNEEPSEEEIDAPKPK 18 2 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 VTKNEEPS(1)EEEIDAPKPK;VTKNEEPS(1)EEEIDAPKPK;VT(0.015)KNEEPS(0.985)EEEIDAPKPK ;; 107.56 0.00050973 230785000 6483.9 6861.8 7663.2 6266.4 7770.3 7645.4 7725.9 7390.4 6227.8 5933.7 TRUE FALSE FALSE 5723.867071 7073.203925 8077.495772 6521.970878 7197.10045 7499.576733 8023.890551 8231.693263 5971.087448 5898.406089 0.970409122 1.199172085 1.36943704 1.105717507 1.22017717 1.271458191 1.360348954 1.39557927 1.012322203 1 12.52610944 -7.153277258 3.784352988 0.985812271 1.278822748 0.726079119 0.080078085 0.089318521 2.312372505 0.013857656 0.017074709 7.03E-08 7.153277258 0.293010477 KAEK(ac)AAAEEPR ddPTM_HeLa_CUDC101_4h_R1 1 KAEKAAAEEPR 11 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 0 1 K(0.074)AEK(0.926)AAAEEPR 101.39 0.015567 2982900 4506.8 4514.8 4729.5 4790.8 4526.3 4091.7 5063.5 4260.5 4050.5 4234 FALSE TRUE FALSE 3978.519736 4653.895637 4985.191076 4986.189532 4192.403867 4013.65764 5258.800891 4745.498098 3883.536676 4208.81598 0.945282416 1.105749374 1.184464016 1.184701245 0.996100539 0.953631059 1.249472754 1.1275138 0.922714772 1 12.03919872 -7.249710775 20.28634877 0.974161151 1.114356573 0.417202952 0.085048542 48.18676787 83345.11223 0.014493268 0.01762715 5.63E-08 7.249710775 0.140195422 EES(ph)PTRINGSIPAGPK ddPTM_HeLa_CUDC101_4h_R1 1 EESPTRINGSIPAGPK 16 1 Q8N6T7;Q8N6T7-2;M0QZ09 Q8N6T7 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 0 EES(0.974)PT(0.022)RINGS(0.004)IPAGPK 114.27 0.00035515 0 745.58 903.26 869 989.8 1146.2 1001.5 745.26 1075.5 927.17 737.12 TRUE FALSE FALSE 658.1842426 931.08837 915.9807686 1030.168322 1061.64711 982.3980561 774.0049278 1197.930573 888.9516602 732.7355775 0.898256155 1.270701736 1.250083655 1.405920982 1.448881619 1.340726568 1.056322296 1.634874311 1.213195711 1 9.517148856 -7.153223332 3.673564082 0.951787135 1.343470266 0.402181866 0.163233445 0.11075441 2.73262359 0.022746686 0.028031245 7.03E-08 7.153223332 0.391683131 VFLKY(ph)PES(ph)LRPAFPR ddPTM_HeLa_CUDC101_4h_R1 1 VFLKYPESLRPAFPR 15 2 O14617;O14617-5;O14617-4;A0A2R8Y4J3 O14617 AP3D1 AP-3 complex subunit delta-1 2 0 VFLKY(1)PES(1)LRPAFPR 63.292 0.0031936 0 2151.3 3504.1 4525.6 3873 4772.6 5084.6 3660.7 3222.2 4842.2 2008 TRUE FALSE FALSE 1899.127875 3612.057168 4770.267625 4030.957681 4420.534806 4987.619727 3801.894425 3589.002223 4642.602466 1996.056327 0.951440022 1.809596813 2.389846199 2.019460887 2.2146343 2.498736964 1.904702976 1.798046566 2.325887503 1 10.96293672 -7.151337602 3.436476158 0.974852344 2.140153927 0.151427006 0.47157484 0.056778507 1.249953854 0.033863321 0.041760408 7.06E-08 7.151337602 1.165301583 T(ph)T(ph)Y(ph)IS(ph)RREK ddPTM_HeLa_CUDC101_4h_R1 1 TTYISRREK 9 2 A0A494C037;E7EUS2;Q8TBZ0-2;Q8TBZ0;H0Y9S3 A0A494C037 CCDC110 Coiled-coil domain-containing protein 110 4 0 T(1)T(1)Y(1)IS(1)RREK 54.776 0.0031871 0 308.76 438.29 560.6 300.84 514.26 483.73 459.01 358.49 349.71 426.65 TRUE FALSE FALSE 272.5676208 451.7931954 590.9077317 313.1095555 476.3240644 474.5036562 476.7141695 399.2990525 335.2948058 424.1122668 0.642677994 1.065267927 1.393281397 0.738270453 1.123108435 1.118816156 1.124028251 0.941493759 0.790580306 1 8.728302401 -7.150479338 9.383387357 0.831362153 1.078047113 0.31710204 0.174648504 0.373340192 29.28011743 0.032242331 0.039509309 7.07E-08 7.150479338 0.246684961 VVPSFLPVDQGGS(ph)LVGR ddPTM_HeLa_CUDC101_4h_R1 2 VVPSFLPVDQGGSLVGR 17 0 Q14126 Q14126 DSG2 Desmoglein-2 1 0 VVPSFLPVDQGGS(1)LVGR;VVPSFLPVDQGGS(1)LVGR ; 197.1 1.88E-16 39762000 3397.06 2314.3 1846.14 2262.47 2366.82 2631.86 2162.56 2028.03 1752.74 2710.29 TRUE FALSE FALSE 2998.861776 2385.60084 1945.947913 2354.743306 2192.224404 2581.661655 2245.970664 2258.892738 1680.491315 2694.169075 1.113093386 0.885468125 0.722281289 0.874014674 0.813692216 0.958240401 0.83364132 0.838437631 0.623751245 1 11.39562468 -7.148052335 5.299635195 1.053062886 0.84268418 0 0.148646874 0.095873398 3.882014018 0.011184075 0.013752489 7.11E-08 7.148052335 -0.210378705 VASPS(ph)PSGSVLFTDEGVPK ddPTM_HeLa_CUDC101_4h_R1 1 VASPSPSGSVLFTDEGVPK 19 0 P56181-2 P56181-2 1 0 VAS(0.051)PS(0.945)PS(0.003)GSVLFTDEGVPK 115.73 0.00014058 8080900 2157.7 1430.5 972.1 1400.4 1442.5 1401.1 1407.5 1104.9 1571.7 1823.1 TRUE FALSE FALSE 1904.777677 1474.572009 1024.654666 1457.514365 1336.089649 1374.376352 1461.787746 1230.67735 1506.913861 1812.25612 1.051053246 0.813666453 0.56540279 0.804254073 0.73725211 0.758378651 0.806612117 0.679085774 0.831512634 1 10.82357115 -7.148005448 4.263465446 1.023921898 0.731771836 0.544347958 0.090405357 0.068090843 2.089021706 0.010856639 0.013378327 7.11E-08 7.148005448 -0.292150062 KAGTQIENIDEDFRDGLK ddPTM_HeLa_CUDC101_4h_R1 1 KAGTQIENIDEDFRDGLK 18 2 O43707;F5GXS2;O43707-3;K7EP19 O43707 ACTN4 Alpha-actinin-4 0 0 51.727 0.033792 26318000 1892.5 1599.1 1719.7 1452.8 1497.5 1753.8 1914.9 1704.4 1890.6 2470.8 FALSE FALSE TRUE 1670.664019 1648.366376 1812.672184 1512.051464 1387.032408 1720.349187 1988.758334 1898.422007 1812.668668 2456.103572 0.680209108 0.671130646 0.738027583 0.615630172 0.564728794 0.700438372 0.809720876 0.772940534 0.738026152 1 11.26215568 -9.154843744 0.747295922 1.016321297 0.689817067 0.151247782 0.104406982 0.32757975 0.306523955 0.064613077 0.015458233 7.00E-10 9.154843744 -0.32650423 KAGTQIENIEEDFRDGLK ddPTM_HeLa_CUDC101_4h_R1 1 KAGTQIENIEEDFRDGLK 18 2 P12814-4;P12814-3;P12814;P12814-2;G3V2N5;G3V5M4;G3V380 P12814-4 ACTN1 Alpha-actinin-1 0 0 73.758 0.0073555 10315000 1210.2 1211.2 1175.5 1478.5 1277.3 1044.4 1313.1 1165.3 1322 1589.5 FALSE FALSE TRUE 1068.342191 1248.515636 1239.051086 1538.799621 1183.076124 1024.47981 1363.746707 1297.953042 1267.5066 1580.045583 0.676146436 0.790176973 0.784186924 0.973895713 0.748760755 0.648386237 0.863105926 0.821465567 0.802196224 1 10.62575046 -9.507941824 1.255690325 1.000094867 0.777946648 0.034559819 0.105282889 0.341665757 0.963614534 0.064867177 0.015645693 3.10E-10 9.507941824 -0.222148219 KAIK(ac)LRPIAVIK ddPTM_HeLa_CUDC101_4h_R1 1 KAIKLRPIAVIK 12 3 Q9Y3I0 Q9Y3I0 RTCB tRNA-splicing ligase RtcB homolog 0 1 K(0.02)AIK(0.98)LRPIAVIK 61.344 0.032968 550550 225.91 69.517 192.82 269.73 286.65 198.27 254.03 181.2 218.45 160.12 FALSE TRUE FALSE 199.4291723 71.65873637 203.2444324 280.7307553 265.5044006 194.4883301 263.8280222 201.8270756 209.4453985 159.1675991 1.25295081 0.450209319 1.276920891 1.763743104 1.668080703 1.221909052 1.657548544 1.268016083 1.315879612 1 7.314402874 -6.520954166 24.99979191 1.062639835 1.516304769 0.436627763 0.270531166 56.18000267 729765.736 0.040873818 0.058321734 3.01E-07 6.520954166 0.453664934 KAKDDATLSGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 KAKDDATLSGKR 12 3 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 0 1 ; KAKDDATLSGK(1)R;KAKDDATLSGK(1)R 93.766 0.006409 36133000 20051.6 30037.4 31631.8 32319.6 44459 25774.2 26754.6 25475.7 27675.7 9819 FALSE TRUE FALSE 17701.18184 30962.81669 33341.91079 33637.73299 41179.34814 25282.60008 27786.53388 28375.75071 26534.89593 9760.596151 1.813534908 3.17222598 3.415970733 3.446278533 4.218937809 2.590272119 2.846807045 2.907173934 2.718573284 1 13.25275355 -7.433270274 1.676874503 1.283417586 3.269449618 0.4431522 0.634278248 0.117490818 0.642218281 0.096131604 0.106690721 3.69E-08 7.433270274 1.986032032 KGPAAPPPT(ph)PVKPPR ddPTM_HeLa_CUDC101_4h_R1 2 KGPAAPPPTPVKPPR 15 2 E9PIE3;Q969G5 E9PIE3 PRKCDBP Protein kinase C delta-binding protein 1 0 KGPAAPPPT(1)PVKPPR;KGPAAPPPT(1)PVKPPR ; 73.953 0.028007 159286000 8218.5 7225.5 8249.8 7948.6 7763.4 8526.2 7345.8 5925 6595.9 7010.6 TRUE FALSE FALSE 7255.139888 7448.109091 8695.809142 8272.778265 7190.709449 8363.576941 7629.129967 6599.47805 6324.01421 6968.900639 1.041073803 1.068763852 1.247802142 1.187099471 1.031828379 1.200128596 1.09473938 0.946989833 0.907462244 1 12.76671537 -7.14785131 3.398832759 1.018976037 1.121831159 0.28507106 0.08930292 0.264754725 5.705695544 0.013869744 0.017120381 7.11E-08 7.14785131 0.102855122 DQQNLPYGVTPAS(ph)PSGHSQGR ddPTM_HeLa_CUDC101_4h_R1 2 DQQNLPYGVTPASPSGHSQGR 21 0 E7ETY4;E9PC69;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-6;Q7KZI7-3;Q7KZI7-14;Q7KZI7-9;Q7KZI7-13;Q7KZI7-4;Q7KZI7-16;Q7KZI7-5;Q7KZI7-15;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 DQQNLPYGVT(0.005)PAS(0.963)PS(0.032)GHSQGR;DQQNLPYGVTPAS(0.982)PS(0.011)GHS(0.007)QGR ; 239.19 4.42E-46 21627200 3281.4 2169.13 1818.71 1708.51 2652.8 2430.4 2238.27 1803.5 2545.5 2491.7 TRUE FALSE FALSE 2896.759266 2235.958324 1917.034964 1778.190423 2457.108229 2384.044169 2324.600824 2008.80315 2440.573413 2476.879258 1.169519773 0.902732064 0.773971908 0.717915666 0.992017767 0.962519332 0.938520042 0.811021831 0.985342101 1 11.27430783 -7.146568083 6.067975656 1.079736146 0.870296672 0.432392311 0.093590334 0.154486695 7.269036091 0.017411943 0.021385657 7.14E-08 7.146568083 -0.209439474 VTT(ph)S(ph)QDMLSIMEK ddPTM_HeLa_CUDC101_4h_R1 1 VTTSQDMLSIMEK 13 0 H9KV48;E9PGN7;P05155-2;P05155;P05155-3 H9KV48 SERPING1 Plasma protease C1 inhibitor 2 0 VT(0.037)T(0.95)S(0.984)QDMLS(0.029)IMEK 54.066 0.0033072 0 1591 1109.7 845.24 1044.5 912.4 1023.1 999.71 1051.7 1310.6 1441.9 TRUE FALSE FALSE 1404.505392 1143.888542 890.9362311 1087.099225 845.0940698 1003.586072 1038.26915 1171.421277 1256.576513 1433.323515 0.979894195 0.79806724 0.621587675 0.758446515 0.589604553 0.700181126 0.724378787 0.817276257 0.876687294 1 10.48514856 -7.145694611 3.049926932 0.99167802 0.700314366 0.703722279 0.071023913 0.070507415 1.249855808 0.010022671 0.012385672 7.15E-08 7.145694611 -0.291363654 (ac)ATSAT(ph)SPHAPGFPAEGR ddPTM_HeLa_CUDC101_4h_R1 1 ATSATSPHAPGFPAEGR 17 0 Q5VVL2;Q9NUP7-2;Q9NUP7 Q5VVL2 TRMT13 tRNA:m(4)X modification enzyme TRM13 homolog 1 0 AT(0.223)S(0.223)AT(0.471)S(0.083)PHAPGFPAEGR 94.339 7.27E-05 16376000 263.5 349.94 338.28 408.31 424 457.25 365.52 300.01 344.52 244.93 TRUE FALSE FALSE 232.6129294 360.7212366 356.56844 424.9626467 392.7223647 448.5287181 379.6182288 334.1619257 330.3187398 243.4731455 0.955394604 1.481564778 1.46450829 1.74541897 1.613000744 1.842210225 1.559179055 1.372479602 1.356694756 1 7.927618845 -7.145111558 2.602192226 0.975809738 1.614683323 0.589587584 0.174441701 0.075307673 0.982478637 0.02194692 0.027143999 7.16E-08 7.145111558 0.638873586 EEEDITVLVT(ph)PEKPLRR ddPTM_HeLa_CUDC101_4h_R1 1 EEEDITVLVTPEKPLRR 17 2 Q5T2Z0;Q5T2Z1;Q6PGN9-3;Q6PGN9-2;Q6PGN9 Q5T2Z0 PSRC1 Proline/serine-rich coiled-coil protein 1 1 0 EEEDITVLVT(1)PEKPLRR 70.529 0.021802 10250000 2532.9 1725.2 1627 1513.9 1686.9 2222 1639.9 1319.6 2392.7 1989.1 TRUE FALSE FALSE 2235.997302 1778.351367 1714.960541 1575.643386 1562.460748 2179.619052 1703.151492 1469.81793 2294.071893 1977.268745 1.130851488 0.899397905 0.867338113 0.79687872 0.790211625 1.102338293 0.861365708 0.743357692 1.160222605 1 10.94929326 -7.14430229 5.333562107 1.061500151 0.866808653 0.521759711 0.100058669 0.157675158 6.362938941 0.016996819 0.020903434 7.17E-08 7.14430229 -0.194691498 GSVPLSS(ph)SPPATHFPDETEITNPVPK ddPTM_HeLa_CUDC101_4h_R1 1 GSVPLSSSPPATHFPDETEITNPVPK 26 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 GS(0.009)VPLS(0.135)S(0.379)S(0.379)PPAT(0.086)HFPDET(0.008)EIT(0.003)NPVPK 55.718 0.0044564 7276700 3077.8 2237.9 2120.4 2225.7 2005.8 2183.1 2387.3 1780.8 2051.9 2730.9 TRUE FALSE FALSE 2717.02495 2306.847046 2235.035238 2316.473666 1857.83613 2141.461005 2479.378961 1983.519074 1967.319814 2714.656485 1.000872473 0.849774938 0.823321569 0.853321103 0.684372457 0.788851561 0.913330646 0.730670376 0.724703042 1 11.40655393 -7.144258829 2.428716098 1.001805613 0.800566973 0 0.105667032 0.11238486 1.277402011 0.0100121 0.012390423 7.17E-08 7.144258829 -0.20123864 KANSSVGK(ac)WQDR ddPTM_HeLa_CUDC101_4h_R1 2 KANSSVGKWQDR 12 2 A0A0B4J203;Q6UN15-4;Q6UN15;Q6UN15-5 A0A0B4J203;Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 0 1 ; KANSSVGK(1)WQDR;KANSSVGK(1)WQDR 140.33 0.00042527 19565900 4960.9 6197.4 6088.3 6103.4 7937.3 6061.2 5377.5 4438.9 6950.6 6705.3 FALSE TRUE FALSE 4379.390822 6388.334548 6417.451914 6352.323033 7351.781192 5945.592709 5584.911976 4944.206433 6664.093326 6665.416577 0.657031826 0.958429901 0.962798325 0.95302716 1.102974001 0.892006169 0.837893913 0.741770057 0.999801475 1 12.70247933 -4.35819932 2.920581019 0.882039565 0.732104998 0.084434414 0.120351172 0.752211476 9.875359178 0.021824044 0.232678443 4.38E-05 4.35819932 -0.149934567 VLVVWDETS(ph)NKVRNY(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 VLVVWDETSNKVRNYR 16 2 P78314;P78314-3;P78314-4 P78314 SH3BP2 SH3 domain-binding protein 2 2 0 VLVVWDET(0.02)S(0.98)NKVRNY(1)R 62.438 0.0029994 0 484.91 578.39 645.36 652.4 724.45 736.02 577.74 573.61 483.09 431.96 TRUE FALSE FALSE 428.0695849 596.2095103 680.2501137 679.0076919 671.0087668 721.9816448 600.0236253 638.9074438 463.1768257 429.3906827 0.99692332 1.388501275 1.584221878 1.581328425 1.562699876 1.681409667 1.397383897 1.4879397 1.078683922 1 8.746147076 -7.143504096 2.969534147 0.996492142 1.548864263 0.907281579 0.074602632 0.045676454 0.769933518 0.012170729 0.015052132 7.19E-08 7.143504096 0.552372121 RQS(ph)VSGLHR ddPTM_HeLa_CUDC101_4h_R1 1 RQSVSGLHR 9 1 Q8N1G4;J3KRP5 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 RQS(0.975)VS(0.025)GLHR 65.395 0.04058 3420500 823.25 474.68 445.02 454.39 481.22 554.06 413.86 215.1 518.04 633.67 TRUE FALSE FALSE 726.749883 489.3043282 469.0791273 472.9219882 445.7213593 543.4922286 429.8227188 239.5861145 496.6861719 629.9009027 1.153752725 0.776795725 0.744687181 0.75078792 0.707605526 0.862821797 0.682365618 0.380355249 0.78851478 1 9.298981068 -7.142927694 4.317380172 1.072243148 0.703669592 0.386235616 0.150979933 0.10652295 3.299503025 0.021452049 0.02644995 7.20E-08 7.142927694 -0.368573556 VTAEADSS(ph)SPTGILATSESK ddPTM_HeLa_CUDC101_4h_R1 2 VTAEADSSSPTGILATSESK 20 0 A0MZ66-4;A0MZ66;A0MZ66-3;A0MZ66-7;A0MZ66-8;A0MZ66-5;A0MZ66-6 A0MZ66-4 KIAA1598 Shootin-1 1 0 VTAEADS(0.077)S(0.845)S(0.077)PT(0.001)GILATSESK;VTAEADS(0.038)S(0.481)S(0.481)PTGILATSESK ; 299.93 3.88E-124 85102000 7935.2 6135.1 5999.4 5380.8 6150.5 6494.7 6120.6 5603.4 7049.1 7125.2 TRUE FALSE FALSE 7005.047885 6324.115159 6323.745711 5600.252282 5696.789869 6370.824418 6356.673592 6241.268406 6758.533114 7082.818994 0.989019752 0.892881092 0.892828931 0.790681265 0.804311091 0.899475819 0.897477911 0.881184231 0.95421514 1 12.79010796 -7.141027509 2.044043099 0.996406523 0.858046003 0.665784891 0.037658705 0.11883694 0.953588175 0.006752721 0.008375853 7.23E-08 7.141027509 -0.138360519 GPIHS(ph)PVELK ddPTM_HeLa_CUDC101_4h_R1 2 GPIHSPVELK 10 0 Q16649 Q16649 NFIL3 Nuclear factor interleukin-3-regulated protein 1 0 GPIHS(1)PVELK;GPIHS(1)PVELK ; 74.392 0.035855 53739000 16272.9 21232.8 19641.8 24349.9 30480 27430.5 26312.2 16575.7 22418.7 11020.3 TRUE FALSE FALSE 14365.41533 21886.9574 20703.69512 25342.99417 28231.55112 26907.30891 27327.07037 18462.61069 21494.5917 10954.75077 1.311341138 1.997942068 1.889928449 2.313424989 2.577105744 2.456222829 2.494540584 1.685351961 1.962125123 1 13.41926904 -7.140979595 1.01456478 1.086967494 2.337427823 0.427015056 0.375520397 0.13663251 0.275741192 0.052896475 0.066860894 7.23E-08 7.140979595 1.250460329 GSEGYLAATYPTVGQT(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 GSEGYLAATYPTVGQTSPR 19 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 GSEGYLAATYPT(0.004)VGQT(0.498)S(0.498)PR 93.342 0.012905 10553000 2575.1 2054.9 2012.7 1680.1 2269.5 2081 1982.9 2202.2 1890.7 2276.7 TRUE FALSE FALSE 2273.250682 2118.209033 2121.51265 1748.62174 2102.083506 2041.308392 2059.381117 2452.889546 1812.764546 2263.158087 1.004459518 0.935952749 0.937412487 0.77264675 0.928827517 0.901973399 0.909959021 1.083834824 0.800988917 1 11.14412165 -7.140379923 2.773052122 1.002446996 0.91509471 0 0.095019848 0.28967659 4.282927926 0.011854632 0.01468095 7.24E-08 7.140379923 -0.087352287 TLEEVVMAEEEDEGTDRPGS(ph)PA ddPTM_HeLa_CUDC101_4h_R1 2 TLEEVVMAEEEDEGTDRPGSPA 22 1 F8WC89;A6NKF1 F8WC89 SAC3D1 SAC3 domain-containing protein 1 1 0 TLEEVVMAEEEDEGT(0.097)DRPGS(0.903)PA;TLEEVVMAEEEDEGT(0.029)DRPGS(0.971)PA ; 154.17 1.01E-06 4344700 2363.39 2194.51 2143.39 2116.16 2669.72 2347.57 2420.03 1711.56 2401.6 2183.73 TRUE FALSE FALSE 2086.357007 2262.120252 2259.268147 2202.466152 2472.780074 2302.794014 2513.371368 1906.397072 2302.605031 2170.741077 0.961126607 1.042095843 1.040781957 1.014614859 1.13914096 1.060833113 1.157840239 0.878224074 1.060746054 1 11.08397194 -7.139960934 4.566297321 0.981735995 1.055596912 0.019468895 0.076074669 0.27407476 9.10109423 0.011156916 0.013751571 7.25E-08 7.139960934 0.073860917 (ac)S(ph)DNDDIEVES(ph)DADKR ddPTM_HeLa_CUDC101_4h_R1 3 SDNDDIEVESDADKR 15 1 A0A494C130;Q6V3B1;G3V563;G3V2R5;P61244-2 A0A494C130 MAX Protein max 2 0 S(1)DNDDIEVES(1)DADKR;S(1)DNDDIEVES(1)DADKR;S(1)DNDDIEVES(1)DADKR ;; 108.18 0.0001556 57821000 8882.3 6725.3 5614.1 5780.2 6630.5 6701.9 6653.5 6696.7 7361.5 7872.8 TRUE FALSE FALSE 7841.130259 6932.498522 5917.615228 6015.94154 6141.381225 6574.072424 6910.127724 7459.025259 7058.055854 7825.972235 1.001936887 0.885832241 0.756150808 0.76871491 0.784743549 0.840032679 0.882973708 0.953111643 0.901875913 1 12.93405428 -7.139406505 3.58987781 1.001093092 0.828335531 0.459985442 0.062987498 0.109953097 2.585008147 0.009852783 0.012181486 7.25E-08 7.139406505 -0.172757561 QQLS(ph)EEEK ddPTM_HeLa_CUDC101_4h_R1 2 QQLSEEEK 8 0 Q8WVC0;Q8WVC0-2 Q8WVC0 LEO1 RNA polymerase-associated protein LEO1 1 0 QQLS(1)EEEK;QQLS(1)EEEK ; 120.06 0.0074496 22894000 7798.9 4615.5 4320.8 4783.1 3573.9 4319.5 4037.2 3115.3 6062.1 7236.5 TRUE FALSE FALSE 6884.724764 4757.698084 4554.395518 4978.175492 3310.260517 4237.112734 4192.916156 3469.93316 5812.217672 7193.456976 0.957081524 0.661392443 0.633130292 0.692042158 0.460176592 0.589023157 0.58287916 0.48237352 0.807986715 1 12.81246954 -7.139328309 1.499593762 0.988873543 0.563490472 0.755628341 0.086034107 0.076546746 0.33006163 0.011732575 0.014628371 7.26E-08 7.139328309 -0.425383071 KAPEPPKTDK(ac)PGAAPPSTEER ddPTM_HeLa_CUDC101_4h_R1 1 KAPEPPKTDKPGAAPPSTEER 21 3 Q7Z3Z5;Q93074-3;Q93074;Q93074-2 Q7Z3Z5 TNRC11;MED12 Mediator of RNA polymerase II transcription subunit 12 0 1 K(0.004)APEPPK(0.13)TDK(0.866)PGAAPPSTEER 45.047 0.027155 5246000 1217.7 1003.7 1096.6 1127.8 929.62 1193.1 1224.9 1291.5 1013.5 1102.4 FALSE TRUE FALSE 1074.963052 1034.622807 1155.885513 1173.796559 861.0437847 1170.343605 1272.144803 1438.51914 971.723101 1095.842876 0.980946334 0.944134264 1.054791283 1.071135821 0.785736536 1.067984865 1.160882487 1.312705655 0.886735793 1 10.09782524 -4.603567574 2.166454578 0.98557041 1.307603528 0.647040297 0.082224666 0.159915812 1.293033568 0.010175435 0.075398652 2.49E-05 4.603567574 0.322033118 IETSIGQSTVIIDLTEDSNEQPDS(ph)LVDHNKLNSEASPSR ddPTM_HeLa_CUDC101_4h_R1 1 IETSIGQSTVIIDLTEDSNEQPDSLVDHNKLNSEASPSR 39 1 Q13111;Q13111-3;Q13111-2;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 IETSIGQSTVIIDLT(0.038)EDS(0.038)NEQPDS(0.727)LVDHNKLNS(0.084)EAS(0.084)PS(0.027)R 84.478 1.79E-11 6133200 1319.6 826 787.15 723.02 976.83 839.61 729.49 791.44 1349.8 942.77 TRUE FALSE FALSE 1164.918488 851.4480809 829.70571 752.5078808 904.771197 823.5958381 757.6266737 881.5343305 1294.160673 937.1623621 1.243027394 0.908538494 0.885338276 0.802964258 0.965436976 0.878818731 0.808426271 0.940642055 1.380935391 1 9.872155204 -7.138103566 6.52568897 1.114479213 0.879055377 0.612501616 0.110859502 0.133482035 6.619738046 0.016415824 0.020154199 7.28E-08 7.138103566 -0.235423837 TFLEGDWTS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 4 TFLEGDWTSPSK 12 0 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 TFLEGDWT(0.161)S(0.826)PS(0.013)K;TFLEGDWT(0.11)S(0.889)PSK;TFLEGDWT(0.073)S(0.909)PS(0.019)K;TFLEGDWT(0.068)S(0.931)PS(0.001)K ;;; 182.23 1.49E-10 302711000 25822.4 21357.1 20781.9 20100.5 22452.1 20157.3 18681.2 19954.6 24624.8 24448.7 TRUE FALSE FALSE 22795.53742 22015.08694 21905.43238 20920.28527 20795.85331 19772.83309 19401.74014 22226.151 23609.75532 24303.27805 0.937961429 0.905848458 0.901336533 0.860800968 0.855681002 0.813587083 0.798317828 0.91453305 0.97146382 1 14.5688633 -7.137084249 0.495667005 0.993215828 0.83136022 0.746230248 0.031028551 0.260617101 0.151095424 0.011390648 0.014979214 7.29E-08 7.137084249 -0.161855608 ELT(ph)PEKDISEEESAPGVLIVR ddPTM_HeLa_CUDC101_4h_R1 1 ELTPEKDISEEESAPGVLIVR 21 1 A0A087WUV0 A0A087WUV0 1 0 ELT(0.996)PEKDIS(0.004)EEES(0.001)APGVLIVR 87.668 0.001028 5340000 932.8 641.45 583.92 601.8 646.28 676.06 557.19 515.48 878.87 794.28 TRUE FALSE FALSE 823.458598 661.2123142 615.4884815 626.3440052 598.605212 663.1652819 578.6810049 574.1601596 842.6426066 789.5555872 1.042939359 0.837448718 0.779537871 0.793286775 0.758154615 0.83992222 0.732919904 0.727194094 1.067236582 1 9.62489703 -7.135658326 3.422044047 1.020478802 0.774955748 0.916925599 0.035530706 0.04702678 1.020389143 0.005884841 0.00728595 7.32E-08 7.135658326 -0.245523054 RPES(ph)PSEISPIK ddPTM_HeLa_CUDC101_4h_R1 1 RPESPSEISPIK 12 1 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 1 0 RPES(0.927)PS(0.065)EIS(0.007)PIK 69.485 0.030481 17343000 3753.5 3360 3345 3579.8 3678.4 3302.5 3660.6 3051.3 3410.8 3350.4 TRUE FALSE FALSE 3313.52042 3463.517617 3525.840818 3725.799717 3407.05176 3239.510315 3801.790568 3398.647658 3270.20538 3330.471672 0.994910255 1.039948079 1.058661104 1.118700318 1.022993767 0.972688146 1.141517161 1.02047037 0.981904578 1 11.7015108 -7.13384896 3.263408008 0.997502175 1.056990159 0.277077451 0.045648921 0.248500373 4.968317309 0.007398937 0.009169576 7.35E-08 7.13384896 0.059487984 KAQQELEEQTRR ddPTM_HeLa_CUDC101_4h_R1 1 KAQQELEEQTRR 12 2 P26038 P26038 MSN Moesin 0 0 59.367 0.039129 6527500 2047.9 2004.4 1816.3 2491.4 2609 2276.2 2226.8 2711.4 1696.5 2019.1 FALSE FALSE TRUE 1807.848266 2066.153188 1914.494672 2593.010061 2416.539268 2232.785277 2312.688422 3020.054816 1626.569552 2007.090303 0.900730906 1.029427119 0.953865737 1.29192496 1.204001267 1.112448839 1.152259277 1.504693043 0.810411743 1 10.97088981 -6.267807845 24.77061634 0.958919584 1.23692731 0.650866637 0.114278556 214.9752602 836161.5688 0.015844753 0.024577033 5.40E-07 6.267807845 0.278007726 NKLEGDSDVDS(ph)ELEDRVDGVK ddPTM_HeLa_CUDC101_4h_R1 2 NKLEGDSDVDSELEDRVDGVK 21 2 Q92614;Q92614-2 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 NKLEGDS(0.369)DVDS(0.631)ELEDRVDGVK;NKLEGDS(0.108)DVDS(0.892)ELEDRVDGVK ; 93.115 0.00039555 60139000 4359.9 3835.7 3407.2 3796.4 3377.4 3241.8 3580.8 3768.7 4298.7 4115.8 TRUE FALSE FALSE 3848.839131 3953.873371 3591.403538 3951.233601 3128.255931 3179.968066 3718.912655 4197.713574 4121.505767 4091.319039 0.940733073 0.966405537 0.877810678 0.965760324 0.764608162 0.77724764 0.90897645 1.026004947 1.007378239 1 11.99835033 -7.133663363 0.74538864 0.982918666 0.87566332 0.254407008 0.075401734 0.643902949 0.736069775 0.019409863 0.025117418 7.35E-08 7.133663363 -0.107255346 QSGDGQES(ph)TEPVENK ddPTM_HeLa_CUDC101_4h_R1 1 QSGDGQESTEPVENK 15 0 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 0 QSGDGQES(0.794)T(0.206)EPVENK 224.06 1.29E-32 16785000 3109.7 1953.5 1919.1 1894.8 1848.3 1938.2 1799.1 1650 2370.8 2379.1 TRUE FALSE FALSE 2745.18568 2013.68502 2022.852351 1972.078134 1711.954591 1901.232064 1868.49189 1837.82933 2273.074621 2364.949007 1.160780072 0.851470798 0.855347132 0.833877656 0.723886471 0.803920955 0.790077031 0.77711161 0.961151642 1 11.20759336 -7.133139606 4.652261231 1.075535354 0.799715571 0.754135181 0.061137026 0.075530775 2.553136093 0.011499079 0.014179566 7.36E-08 7.133139606 -0.275819783 GYT(ph)SDSEVYTDHGR ddPTM_HeLa_CUDC101_4h_R1 1 GYTSDSEVYTDHGR 14 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 GYT(0.96)S(0.039)DS(0.001)EVYTDHGR 100.68 0.010362 15606000 1740.5 1252.8 1017.5 929.95 1359.3 1171.2 1290.1 816.61 1385.8 1603.2 TRUE FALSE FALSE 1536.481228 1291.397283 1072.509128 967.8773806 1259.027147 1148.861311 1339.859589 909.5695815 1328.676737 1593.664095 0.96411862 0.810332169 0.672983178 0.607328347 0.790020401 0.720893013 0.84074153 0.570741089 0.83372446 1 10.63813186 -7.132661233 2.5736419 0.985025603 0.708064428 0.558811239 0.088726311 0.098861203 1.263472616 0.012411358 0.015417168 7.37E-08 7.132661233 -0.276961175 HSLS(ph)LDDIR ddPTM_HeLa_CUDC101_4h_R1 3 HSLSLDDIR 9 0 Q96NE9-3;Q96NE9-2;Q96NE9 Q96NE9-3 FRMD6 FERM domain-containing protein 6 1 0 HS(0.434)LS(0.566)LDDIR;HS(0.001)LS(0.999)LDDIR;HS(0.081)LS(0.919)LDDIR ;; 112.64 0.0011966 12415300 2826.71 2475.31 2659.41 2798.64 2996.47 2543.33 2599.88 2016.07 2374.85 2425.19 TRUE FALSE FALSE 2495.367339 2551.571367 2803.185749 2912.780636 2775.426378 2494.820218 2700.158242 2245.57126 2276.957678 2410.764862 1.035093624 1.058407399 1.162778582 1.208239211 1.151263826 1.034866675 1.120042143 0.931476684 0.944495962 1 11.23527523 -7.13237558 2.818456721 1.015885652 1.106305222 0.270437624 0.075902943 0.295877224 4.515633685 0.012609077 0.01565426 7.37E-08 7.13237558 0.09041957 WSDSSKQDDS(ph)PSGASYGQDYDLS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 WSDSSKQDDSPSGASYGQDYDLSPSR 26 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 2 0 WS(0.001)DS(0.034)S(0.109)KQDDS(0.852)PS(0.005)GAS(0.141)Y(0.037)GQDY(0.001)DLS(0.675)PS(0.145)R 86.023 2.37E-05 19256000 2129.4 2020.4 2392.9 1924.3 2386.2 2344.8 2006.2 1334.9 2560.4 2014.1 TRUE FALSE FALSE 1879.79496 2082.646129 2522.267412 2002.781272 2210.17478 2300.076847 2083.579806 1486.85962 2454.859228 2002.120044 0.938902223 1.040220408 1.259798292 1.000330264 1.103917214 1.148820648 1.040686752 0.742642593 1.22612989 1 10.96731276 -7.131894718 6.241421429 0.971388211 1.061154477 0 0.148802096 0.426281067 20.01879522 0.02040326 0.025063482 7.38E-08 7.131894718 0.089766266 LHKTEDGGWEWS(ph)DDEFDEESEEGK ddPTM_HeLa_CUDC101_4h_R1 4 LHKTEDGGWEWSDDEFDEESEEGK 24 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 LHKT(0.002)EDGGWEWS(0.836)DDEFDEES(0.162)EEGK;LHKT(0.001)EDGGWEWS(0.999)DDEFDEESEEGK;LHKT(0.001)EDGGWEWS(0.997)DDEFDEES(0.001)EEGK;LHKTEDGGWEWS(0.998)DDEFDEES(0.002)EEGK ;;; 82.761 4.51E-05 169849600 8530.66 7777.55 8910.2 8608.4 9509.7 9918.1 8397.47 7598.8 9984.6 6960.13 TRUE FALSE FALSE 7530.708966 8017.167097 9391.912364 8959.487761 8808.188377 9728.928767 8721.363231 8463.816677 9573.030562 6918.730837 1.088452368 1.158762681 1.357461735 1.294961167 1.273093084 1.406172461 1.260543796 1.223319258 1.383639686 1 12.7562917 -7.129545811 1.668570779 1.03494819 1.304604127 0.021383136 0.12268699 0.103383179 0.552208226 0.010480324 0.013090452 7.42E-08 7.129545811 0.269655937 LAVEALS(ph)SLDGDLAGR ddPTM_HeLa_CUDC101_4h_R1 1 LAVEALSSLDGDLAGR 16 0 P12277;G3V4N7 P12277 CKB Creatine kinase B-type 1 0 LAVEALS(0.5)S(0.5)LDGDLAGR 151.38 0.00016194 2273600 2688.7 2189.9 2168.8 2082.8 2251.8 1903 2244.7 2465.4 2370.3 2405.8 TRUE FALSE FALSE 2373.534662 2257.368223 2286.051888 2167.745587 2085.6892 1866.703446 2331.278831 2746.051171 2272.595231 2391.490195 0.992491906 0.943916989 0.955911044 0.906441344 0.872129522 0.780560777 0.974822659 1.148259431 0.950284152 1 11.22369416 -7.128368074 1.7000086 0.997571325 0.928488679 0.024656734 0.088834007 0.628464661 3.485510014 0.016446928 0.020545952 7.44E-08 7.128368074 -0.069082646 KASAISIK(ac)LGSSKPK ddPTM_HeLa_CUDC101_4h_R1 2 KASAISIKLGSSKPK 15 3 Q8WW12;Q8WW12-2 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 0 1 ; K(0.001)ASAISIK(0.999)LGSSKPK;KASAISIK(1)LGSSKPK 121.13 0.0026279 10072400 4430.96 4529.57 4833.67 4797.29 5415.07 4358.69 4679.56 5978.23 3730.58 4753.31 FALSE TRUE FALSE 3911.569586 4669.120683 5094.992821 4992.944222 5015.611074 4275.55525 4860.052197 6658.767538 3576.803913 4725.037101 0.827838915 0.98816593 1.078296892 1.056699475 1.061496654 0.904872313 1.028574399 1.409251906 0.756989593 1 12.20610994 -6.934106031 3.995261618 0.918137057 1.075391486 0.336552753 0.135821494 0.246203593 7.945522487 0.021639275 0.028563039 1.16E-07 6.934106031 0.157254429 NDS(ph)GEENVPLDLTREPSDNLR ddPTM_HeLa_CUDC101_4h_R1 2 NDSGEENVPLDLTREPSDNLR 21 1 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 NDS(0.838)GEENVPLDLT(0.069)REPS(0.093)DNLR;NDS(0.952)GEENVPLDLT(0.035)REPS(0.013)DNLR ; 61.976 0.0086048 43154000 4404.5 4399.4 4665.3 4535.9 4989.3 4488.88 4289.7 4387.1 4875.8 4300.45 TRUE FALSE FALSE 3888.211187 4534.940299 4917.52023 4720.893608 4621.249279 4403.262093 4455.155166 4886.509731 4674.81746 4274.870732 0.909550588 1.060836826 1.150331914 1.104335991 1.081026672 1.030033975 1.042173073 1.143077776 1.093557619 1 12.06166508 -7.128354767 5.496957683 0.957549657 1.088153539 0.230450353 0.059513398 0.113928478 4.670485785 0.008202909 0.010093088 7.44E-08 7.128354767 0.130603882 DLPPFGINS(ph)PQALKK ddPTM_HeLa_CUDC101_4h_R1 2 DLPPFGINSPQALKK 15 1 A0A2R8Y661;H0Y8H7;A0A2R8YGD3;Q9Y4G8 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 DLPPFGINS(1)PQALKK;DLPPFGINS(1)PQALKK ; 111.73 0.001186 97856000 9925.1 8475.3 8066.9 8099.7 8725.1 6968.8 7065.4 7067.1 7898.2 10182.1 TRUE FALSE FALSE 8761.694823 8736.413947 8503.021015 8430.040776 8081.466756 6835.881751 7337.914845 7871.590098 7572.632853 10121.53642 0.865648698 0.863150967 0.840091925 0.832881534 0.798442689 0.67537985 0.724980333 0.777707037 0.748170292 1 13.30514068 -7.128269816 0.148315267 1.123430844 0.582755955 0.012000766 0.085350062 1.23208305 0.154288223 0.23372076 0.272418391 7.44E-08 7.128269816 -0.540674889 KLS(ph)PTKEAFGEQPLQLTTKPDLLAWDPAR ddPTM_HeLa_CUDC101_4h_R1 2 KLSPTKEAFGEQPLQLTTKPDLLAWDPAR 29 3 O00257 O00257 CBX4 E3 SUMO-protein ligase CBX4 1 0 KLS(0.789)PT(0.211)KEAFGEQPLQLTTKPDLLAWDPAR;KLS(0.5)PT(0.5)KEAFGEQPLQLTTKPDLLAWDPAR ; 90.762 1.81E-07 176164000 3533.2 3935.1 4353.7 4448.7 4790.9 3941.5 3653 3909.9 3162.1 3620.1 TRUE FALSE FALSE 3119.043652 4056.335767 4589.074191 4630.137215 4437.484852 3866.322454 3793.897434 4354.987212 3031.7569 3598.567484 0.866745911 1.127208475 1.27525028 1.286661216 1.233125368 1.074405988 1.054279918 1.210200234 0.842489939 1 11.813207 -7.12790887 4.972978476 0.937556069 1.185200345 0.698301443 0.08321741 0.112143564 4.105158793 0.015398809 0.018976625 7.45E-08 7.12790887 0.247644277 LPLPS(ph)PALEYTLGSR ddPTM_HeLa_CUDC101_4h_R1 2 LPLPSPALEYTLGSR 15 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 LPLPS(1)PALEYTLGSR;LPLPS(0.767)PALEY(0.107)T(0.077)LGS(0.049)R ; 192.78 5.68E-12 144297000 3484 2284.9 2221.2 2019 1985.04 1639.84 2317.5 2479.1 2570.77 3065.3 TRUE FALSE FALSE 3075.610801 2355.295061 2341.284791 2101.343547 1838.607554 1608.562784 2406.886751 2761.310723 2464.801772 3047.067459 1.00936748 0.772971092 0.76837314 0.689628167 0.603402313 0.527905209 0.78990268 0.906219098 0.808909486 1 11.57320572 -7.127886892 2.249106456 1.006587151 0.701681264 0.39120487 0.115829309 0.137998761 1.347154854 0.0179759 0.02238833 7.45E-08 7.127886892 -0.304905886 YDEIFYNLAPADGKLS(ph)GSK ddPTM_HeLa_CUDC101_4h_R1 2 YDEIFYNLAPADGKLSGSK 19 1 Q9NZN4;Q9NZN4-2 Q9NZN4 EHD2 EH domain-containing protein 2 1 0 YDEIFYNLAPADGKLS(0.916)GS(0.084)K;YDEIFYNLAPADGKLS(0.872)GS(0.128)K ; 124.19 2.85E-05 240340000 4392.1 3529 3047.3 3288 3217.5 3994.5 3302.5 2828.2 3352.1 4044.8 TRUE FALSE FALSE 3877.264696 3637.724307 3212.046256 3422.098852 2980.151435 3918.311568 3429.878531 3150.150856 3213.925019 4020.74135 0.964315871 0.904739696 0.798869158 0.851111413 0.741194515 0.974524653 0.8530463 0.783475131 0.799336426 1 11.97324582 -7.127155121 2.315754378 0.984791392 0.837600729 0.059266758 0.082651203 0.156295591 1.618619636 0.009953214 0.012396876 7.46E-08 7.127155121 -0.147190664 TVSS(ph)PPTS(ph)PRPGSAATVSASTSNIIPPR ddPTM_HeLa_CUDC101_4h_R1 1 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 2 0 T(0.036)VS(0.175)S(0.769)PPT(0.24)S(0.723)PRPGS(0.019)AAT(0.007)VS(0.003)AS(0.003)T(0.02)S(0.007)NIIPPR 65.875 0.00092486 111280000 1798.3 1394.5 1232 1465.3 1408.1 1429.3 1457.1 1176.8 1827.6 1525.4 TRUE FALSE FALSE 1587.506 1437.462892 1298.605647 1525.061268 1304.227268 1402.038484 1513.300835 1310.762155 1752.265554 1516.326853 1.046941823 0.947990131 0.856415386 1.005760245 0.86012278 0.924628144 0.998004376 0.864432462 1.155598841 1 10.56636505 -7.126575507 4.996902652 1.021947645 0.922010754 0.470511421 0.06582452 0.144012748 5.304713727 0.007981742 0.009836481 7.47E-08 7.126575507 -0.099936891 VQMTSPS(ph)STGSPMFK ddPTM_HeLa_CUDC101_4h_R1 1 VQMTSPSSTGSPMFK 15 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 VQMT(0.001)S(0.003)PS(0.376)S(0.236)T(0.15)GS(0.235)PMFK 122.34 0.0001783 0 1346.2 778.82 723.36 705.32 765.15 684.19 782.67 545.63 1254.2 1011 TRUE FALSE FALSE 1188.400477 802.8145211 762.4670296 734.0859983 708.7064089 671.1402157 812.8578441 607.7423137 1202.501345 1004.986527 1.182503889 0.798831128 0.758683832 0.730443621 0.70518996 0.667810162 0.808824618 0.604726827 1.196534792 1 9.972960445 -7.126138736 4.34993912 1.085682892 0.719492456 0.85800087 0.074816909 0.068853484 2.13706895 0.013777176 0.017022392 7.48E-08 7.126138736 -0.366190436 KQDLS(ph)S(ph)S(ph)LT(ph)DDSK ddPTM_HeLa_CUDC101_4h_R1 1 KQDLSSSLTDDSK 13 1 A0A3B3IUB9;Q9NR09 A0A3B3IUB9 BIRC6 Baculoviral IAP repeat-containing protein 6 4 0 KQDLS(1)S(1)S(1)LT(1)DDSK 75.479 0.021972 19132000 1070.8 639.49 592.58 692.63 578.6 648.48 641.46 571.58 778.47 718.6 TRUE FALSE FALSE 945.2824472 659.1919289 624.6166673 720.8784452 535.9178307 636.1113244 666.2013271 636.6463568 746.3811371 714.3257352 1.323321281 0.922816996 0.874414341 1.00917328 0.750242927 0.89050596 0.932629603 0.891254963 1.044875048 1 9.480438288 -7.125946676 7.306296225 1.15243459 0.892777066 0.515133442 0.09996068 0.171179803 9.497434548 0.02166431 0.026579773 7.48E-08 7.125946676 -0.259657524 GGAPDPSPGATATPGAPAQPS(ph)SPDAR ddPTM_HeLa_CUDC101_4h_R1 2 GGAPDPSPGATATPGAPAQPSSPDAR 26 0 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 GGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDAR;GGAPDPSPGATATPGAPAQPS(0.831)S(0.168)PDAR ; 156.69 2.36E-11 62749000 5734.8 3905 3831.6 3844.4 3485.48 4092.8 3559.6 3246.53 4085 4930.6 TRUE FALSE FALSE 5062.575437 4025.308421 4038.747886 4001.191249 3228.363084 4014.736659 3696.894964 3616.101852 3916.614571 4901.272572 1.032910405 0.821278222 0.824020257 0.816357628 0.658678545 0.819121279 0.754272469 0.73778836 0.799101563 1 12.25894067 -7.125430664 2.563775022 1.016483477 0.767090927 0.390204667 0.083704874 0.073076737 0.927886091 0.008240879 0.010262403 7.49E-08 7.125430664 -0.24939255 SPSS(ph)PVPVVK ddPTM_HeLa_CUDC101_4h_R1 2 SPSSPVPVVK 10 0 A2RUB6-3;A2RUB6 A2RUB6-3 CCDC66 Coiled-coil domain-containing protein 66 1 0 S(0.005)PS(0.005)S(0.99)PVPVVK;SPS(0.006)S(0.994)PVPVVK ; 117.25 0.0056549 16662300 9404.5 7918.3 7309.7 7689 8076.7 6464 6305.2 8290.6 8302.3 9009.1 TRUE FALSE FALSE 8302.118766 8162.253438 7704.884493 8002.590655 7480.897932 6340.70997 6548.393676 9234.368392 7960.07568 8955.513473 0.927039951 0.91142216 0.860350947 0.893593726 0.835339923 0.708023051 0.731213648 1.031137792 0.888846374 1 13.12856044 -7.125129981 0.565013814 0.986713955 0.815076586 0.164952549 0.088965267 0.574910644 0.409499496 0.026476472 0.035054559 7.50E-08 7.125129981 -0.171637369 ETS(ph)PQVKGEEMPAGK ddPTM_HeLa_CUDC101_4h_R1 1 ETSPQVKGEEMPAGK 15 1 A0A0C4DG22;Q9GZR2 A0A0C4DG22 REXO4 RNA exonuclease 4 1 0 ET(0.189)S(0.811)PQVKGEEMPAGK 73.415 0.018494 36171000 3355.5 3472.5 3309.6 3645.7 3863.7 3868.8 3278.3 3582.8 4021.3 3387.8 TRUE FALSE FALSE 2962.173377 3579.483609 3488.526987 3794.387404 3578.682549 3795.009086 3404.745129 3990.65147 3855.540312 3367.649215 0.879596771 1.062902749 1.035893813 1.126716936 1.06266488 1.12690154 1.011015374 1.184996184 1.144875866 1 11.71752616 -7.124447417 5.291655548 0.943343003 1.086629021 0.013745914 0.083544659 0.126742562 4.994751011 0.01005698 0.012384111 7.51E-08 7.124447417 0.143286019 QQPPEPEWIGDGEST(ph)SPSDKVVK ddPTM_HeLa_CUDC101_4h_R1 1 QQPPEPEWIGDGESTSPSDKVVK 23 1 Q8NE71;Q5STZ8;Q8NE71-2;A0A0G2JIC2 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 QQPPEPEWIGDGES(0.167)T(0.501)S(0.317)PS(0.016)DKVVK 111.27 8.94E-06 298450000 4290.6 4245.1 4336.9 4601.4 5086 4504.3 4340.4 4090.6 3802.7 3901 TRUE FALSE FALSE 3787.662372 4375.886499 4571.365932 4789.064981 4710.815913 4418.387982 4507.810682 4556.257369 3645.951096 3877.796679 0.976756309 1.128446606 1.178856529 1.234996411 1.214817667 1.13940682 1.162467003 1.174960357 0.940212032 1 11.92102145 -7.123784612 3.115289654 0.988703403 1.183995009 0.907257235 0.030140283 0.051578972 0.94984899 0.004946206 0.006150442 7.52E-08 7.123784612 0.195291606 IETIAAS(ph)STPTPIR ddPTM_HeLa_CUDC101_4h_R1 1 IETIAASSTPTPIR 14 0 Q96P47;Q96P47-2;Q96P47-4;Q96P47-5;H7C5G0;H7C4U6;E7ESL9;Q96P47-3;Q96P47-6 Q96P47 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" 1 0 IETIAAS(0.459)S(0.317)T(0.221)PT(0.002)PIR 102.33 0.0064602 10374000 1973.5 1217.7 1301.5 1056.9 874.8 1093.9 1026.6 1421.3 1480.1 1832.3 TRUE FALSE FALSE 1742.169322 1255.215894 1371.863027 1100.00495 810.2677468 1073.03568 1066.196306 1583.095047 1419.089652 1821.401398 0.956499387 0.689148419 0.753190938 0.603933296 0.444859517 0.589126417 0.585371411 0.869163189 0.779119667 1 10.83083318 -7.12342293 1.408125966 0.987980731 0.614283393 0.452722386 0.12512184 0.152794462 0.582769335 0.019977668 0.025115357 7.53E-08 7.12342293 -0.373697338 KASTK(ac)DSESPSQK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 KASTKDSESPSQKK 14 3 E7ETY2;Q13428-6;Q13428-7;H0YA99;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 0 2 KASTK(1)DSESPSQK(1)K 113.22 0.011577 1133400 175.99 433.07 825.59 1081.4 1251.5 1318.5 1192.2 951.05 0 113.21 FALSE TRUE FALSE 155.360719 446.4123734 870.2238927 1125.504166 1159.179338 1293.351809 1238.183553 1059.313688 0 112.5366219 1.380534766 3.966818676 7.732806246 10.0012258 10.30046325 11.49271933 11.00249441 9.413057456 0 1 6.814250752 -6.748440184 1.467425292 1.110248393 10.65593938 0.979357883 0.621074133 0.02839974 0.123739547 0.089606788 0.132826622 1.78E-07 6.748440184 9.545690987 SHLEPSGNPLPATPTTSAPSAPPAS(ph)SQGPDTAPRPSPPQEEAR ddPTM_HeLa_CUDC101_4h_R1 1 SHLEPSGNPLPATPTTSAPSAPPASSQGPDTAPRPSPPQEEAR 43 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 SHLEPSGNPLPATPT(0.011)T(0.011)S(0.004)APS(0.033)APPAS(0.305)S(0.305)QGPDT(0.099)APRPS(0.232)PPQEEAR 70.244 4.01E-08 24926000 1782.2 1101 999.86 861.05 1199.7 1132.1 1041.8 844.01 1184.1 1362.9 TRUE FALSE FALSE 1573.293218 1134.920505 1053.915456 896.1673408 1111.200521 1110.507079 1081.982575 940.0886868 1135.290897 1354.79341 1.16127906 0.837707429 0.777915989 0.661478964 0.820199237 0.819687393 0.798632889 0.693898184 0.837980823 1 10.40385716 -7.120967667 4.460548547 1.075676822 0.767163646 0.503102991 0.096757025 0.075738654 2.437692154 0.012832947 0.01585805 7.57E-08 7.120967667 -0.308513176 LEQLESGEEELVLAEYES(ph)DEEKK ddPTM_HeLa_CUDC101_4h_R1 1 LEQLESGEEELVLAEYESDEEKK 23 1 F5GXJ8;F6WZM0;F5H235;C9K0E8;B4DMS8;Q96FC9-5;Q96FC9-4;Q96FC9-3;Q96FC9-2;Q96FC9;A8MPP1 F5GXJ8 DDX11;DDX11L8 Probable ATP-dependent RNA helicase DDX11;Putative ATP-dependent RNA helicase DDX11-like protein 8 1 0 LEQLESGEEELVLAEY(0.378)ES(0.622)DEEKK 61.526 0.003115 0 511.63 273.26 226.14 198.39 252.98 291.82 296.49 314.82 295.74 314.88 TRUE FALSE FALSE 451.657507 281.6788167 238.3658124 206.4812017 234.3181694 286.2540197 307.9257186 350.6578363 283.549472 313.0070798 1.442962592 0.899911967 0.761534891 0.659669429 0.748603417 0.914528898 0.983765987 1.120287236 0.905888366 1 8.290051479 -7.120720528 7.370767814 1.208813927 0.855740473 0.23184228 0.184124485 0.202636771 11.50078587 0.0345695 0.042413012 7.57E-08 7.120720528 -0.353073453 KATATISAK(ac)PQITNPK ddPTM_HeLa_CUDC101_4h_R1 2 KATATISAKPQITNPK 16 2 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 0 1 ; K(0.001)ATATISAK(0.999)PQITNPK;KATATISAK(1)PQITNPK 124.16 0.00022984 980130 2387.8 1841.05 1871.41 1971.04 2304.3 1924.56 2142.44 2128.6 2139.57 1744.98 FALSE TRUE FALSE 2107.905704 1897.770568 1972.584085 2051.427531 2134.31638 1887.852225 2225.074628 2370.91122 2051.376019 1734.600781 1.215210858 1.094067631 1.137197738 1.182651105 1.230436653 1.088349691 1.282758922 1.36683394 1.182621408 1 10.76038795 -13.52287875 0.114451212 0.356910679 1.319644022 0.235268514 0.087116239 60.02192416 0.500917246 9.157146744 0.424742009 3.00E-14 13.52287875 0.962733343 SESSTSAFST(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 SESSTSAFSTPTR 13 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 SESSTSAFS(0.08)T(0.754)PT(0.166)R 140.45 0.0035695 18580000 2688.7 2305 2096.3 2136.1 2393.4 2476.4 1996.5 996.15 2402.8 2458.3 TRUE FALSE FALSE 2373.534662 2376.014318 2209.632319 2223.219391 2216.84365 2429.166796 2073.505674 1109.547689 2303.755567 2443.677922 0.971296029 0.972310752 0.904224038 0.909784129 0.907175054 0.994061768 0.848518397 0.454048252 0.942741081 1 11.25483843 -4.262036254 2.41390021 0.968703564 0.334238347 0.938356274 0.037797244 0.10016729 0.701446275 0.006113112 0.131621451 5.47E-05 4.262036254 -0.634465216 down AYS(ph)PEYR ddPTM_HeLa_CUDC101_4h_R1 1 AYSPEYR 7 0 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 AYS(0.997)PEY(0.003)R 88.177 0.035507 732450000 4944.6 4732.3 5267.2 4988.3 4564.5 5028.6 4506.1 4545 4874.5 4797.2 TRUE FALSE FALSE 4365.001484 4878.096554 5551.960764 5191.744435 4227.785929 4932.687833 4679.901786 5062.384428 4673.571047 4768.666041 0.915350634 1.022947825 1.164258666 1.088720491 0.886576223 1.034395739 0.981385936 1.061593407 0.980058366 1 12.21937004 -7.1203483 7.446093626 0.96016243 1.034339171 0.169904429 0.070160298 0.352555997 20.25273837 0.012527953 0.015369399 7.58E-08 7.1203483 0.074176741 KAVLFCLSEDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 KAVLFCLSEDKK 12 2 P23528;G3V1A4;E9PP50;E9PK25;E9PQB7;E9PLJ3;E9PS23 P23528 CFL1 Cofilin-1 0 1 ; KAVLFCLSEDK(1)K;KAVLFCLSEDK(1)K 194.98 1.38E-10 2476170 3161.49 1687.67 1636.59 1352.55 3520.28 3082.13 2899.5 2660.24 2790.85 1613.92 FALSE TRUE FALSE 2790.904935 1739.665112 1725.069006 1407.712835 3260.595958 3023.343505 3011.334686 2963.070969 2675.809982 1604.320332 1.739618254 1.084362691 1.075264691 0.877451222 2.032384613 1.884501147 1.877015847 1.846932255 1.667877623 1 10.64774652 -1 0.195638838 1.167995734 4.990680874 0.265274155 0.360555308 54.20979378 0.615174856 0.403645665 63.57286849 0.1 1 3.82268514 TGPPPISPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 TGPPPISPSK 10 0 A0A075B6E4;A0A0A6YYI5;G5E9M7;Q14135-2;Q14135;Q14135-4;A0A096LP98;E7EUJ2;F8WBN7;F8W708;E7ERW0;E7EQU6;E7EWF5 A0A075B6E4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 T(0.118)GPPPIS(0.225)PS(0.657)K;T(0.003)GPPPIS(0.291)PS(0.706)K ; 139.76 0.0012915 141304000 10240 7411.2 8369.5 8575.2 8347 7029.2 7257.2 8531.3 10608.9 9313.3 TRUE FALSE FALSE 9039.682723 7639.530288 8821.980486 8924.933721 7731.25844 6895.129721 7537.112635 9502.468707 10171.59665 9257.904077 0.976428644 0.825190046 0.952913361 0.964033938 0.835098136 0.744783016 0.81412732 1.026416846 1.098693243 1 13.1764699 -7.120159239 0.666312667 0.998594375 0.85909353 0.335418627 0.086975667 0.5851392 0.549073521 0.022279195 0.029327061 7.58E-08 7.120159239 -0.139500845 ASPEPQRENASPAPGT(ph)TAEEAMSR ddPTM_HeLa_CUDC101_4h_R1 2 ASPEPQRENASPAPGTTAEEAMSR 24 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 ASPEPQRENAS(0.215)PAPGT(0.563)T(0.204)AEEAMS(0.017)R;ASPEPQRENAS(0.002)PAPGT(0.498)T(0.498)AEEAMS(0.001)R ; 110.25 8.97E-07 90089000 2612.98 2684.7 2351.65 2403.37 3494.2 2459.3 2606.1 2674.6 2727.9 2204.46 TRUE FALSE FALSE 2306.690445 2767.412425 2478.787312 2501.389817 3236.439827 2412.39295 2706.61815 2979.065653 2615.454807 2191.347774 1.052635494 1.262881437 1.131170206 1.141484636 1.476917478 1.100871792 1.235138567 1.359467305 1.193537073 1 11.09760275 -7.11955719 0.708339552 1.006389082 1.270712365 0.208790016 0.121584354 0.360266169 0.375977384 0.026298958 0.034480024 7.59E-08 7.11955719 0.264323283 KAVTK(ac)AQK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 KAVTKAQKK 9 3 O60814;P57053;P58876;P62807;Q16778;Q8N257;Q93079;U3KQK0;Q99877;Q99880;Q6DRA6;Q6DN03 O60814;P58876;P62807;Q16778;Q8N257;Q93079;U3KQK0;Q99880;Q6DRA6 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BL;HIST2H2BD;HIST2H2BC Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Putative histone H2B type 2-D;Putative histone H2B type 2-C 0 2 KAVTK(1)AQK(1)K 105.13 0.00070592 0 19177 3317.8 1490.4 9761.4 4171 5685.4 5232.5 1397.1 1253.1 264.14 FALSE TRUE FALSE 16929.10113 3420.017485 1570.975532 10159.51208 3863.31364 5576.960468 5434.319278 1556.140217 1201.446688 262.5688835 64.47489475 13.02522005 5.983098649 38.69274968 14.71352427 21.23999003 20.69673757 5.926597988 4.575739027 1 8.036552145 -6.385814018 22.33589725 10 20.25749047 0 19.18442815 30.33703676 5321.110805 5.348466563 8.169916616 4.11E-07 6.385814018 10.25749047 KAVTK(ac)VQK ddPTM_HeLa_CUDC101_4h_R1 2 KAVTKVQK 8 2 Q5QNW6;Q5QNW6-2 Q5QNW6 HIST2H2BF Histone H2B type 2-F 0 1 ; K(0.002)AVTK(0.998)VQK;KAVTK(1)VQK 85.29 0.014079 0 3992.9 985.87 1891.7 4113.5 1418.62 2033.42 1963.85 915.48 1132.05 914.57 FALSE TRUE FALSE 3524.858315 1016.243486 1993.971024 4281.26631 1313.971229 1994.635901 2039.596352 1019.694543 1085.38642 909.130097 3.877177014 1.117819649 2.193273582 4.709189944 1.445306049 2.194004915 2.24345928 1.121615648 1.193873598 1 9.828342949 -2.678090043 13.86363116 2.308847607 1.92296178 0 1.215818356 0 0 0.175370584 0 0.002098505 2.678090043 -0.385885827 (ac)TECFLPPTSS(ph)PSEHRR ddPTM_HeLa_CUDC101_4h_R1 2 TECFLPPTSSPSEHRR 16 1 J3QLT3;E7ENF8;A0A1W2PRI7;Q15311 J3QLT3 RALBP1 RalA-binding protein 1 1 0 TECFLPPT(0.194)S(0.17)S(0.629)PS(0.007)EHRR;TECFLPPT(0.066)S(0.259)S(0.635)PS(0.04)EHRR ; 58.864 0.0090241 8677600 1904.18 1327.54 1180.69 1285.26 1256.25 1175.94 1160.32 1494.32 1584.03 1557.6 TRUE FALSE FALSE 1680.974907 1368.439934 1244.521673 1337.678458 1163.57894 1153.510904 1205.073931 1664.427349 1518.735613 1548.335326 1.085665927 0.883813675 0.803780455 0.863946224 0.751503192 0.745000701 0.778302937 1.074978605 0.98088288 1 10.59650224 -7.117499322 4.228040886 1.040135705 0.827839571 0.440502838 0.092592806 0.131581701 3.956578082 0.015191583 0.018803951 7.63E-08 7.117499322 -0.212296134 AHPEVNGDTK(ac)WHSFK ddPTM_HeLa_CUDC101_4h_R1 2 AHPEVNGDTKWHSFK 15 1 D6RE87;E7EPB1;E7EQS8;Q6N021-2;Q6N021-3;Q6N021 D6RE87 TET2 Methylcytosine dioxygenase TET2 0 1 ; AHPEVNGDTK(1)WHSFK;AHPEVNGDTK(1)WHSFK 98.253 0.0064253 14637300 14701.6 11740.7 11880.5 11136.6 11752.1 11507.1 12125.8 21927 10481.5 11244.4 FALSE TRUE FALSE 12978.30073 12102.41705 12522.79577 11590.79868 10885.171 11287.62124 12593.49617 24423.08105 10049.44813 11177.51781 1.161107587 1.082746389 1.120355698 1.036974298 0.973845104 1.009850437 1.126680931 2.185018308 0.899076906 1 13.44831222 -4.261764906 4.926209574 1.067509966 2.242351426 0.95284833 0.076010652 0.023819328 1.736155833 0.009898285 0.095181069 5.47E-05 4.261764906 1.17484146 S(ph)LLGIDTEDAIQGR ddPTM_HeLa_CUDC101_4h_R1 3 SLLGIDTEDAIQGR 14 0 P49454 P49454 CENPF Centromere protein F 1 0 S(0.999)LLGIDT(0.001)EDAIQGR;S(1)LLGIDTEDAIQGR;S(1)LLGIDTEDAIQGR ;; 220.25 1.30E-32 46953300 2454.15 1920.71 1554.29 1537.13 1915.61 1719.83 1706.09 1115.81 2568.98 2389.62 TRUE FALSE FALSE 2166.478257 1979.884798 1638.319619 1599.820805 1774.299267 1687.027108 1771.894463 1242.8293 2463.085557 2375.406434 0.912045293 0.833493069 0.689700758 0.673493505 0.746945551 0.710205666 0.745933175 0.523207011 1.036911209 1 11.21395867 -7.117275167 0.995050488 0.974194926 0.677964951 0.814425029 0.064868137 0.143443512 0.279027701 0.012969247 0.016613687 7.63E-08 7.117275167 -0.296229975 TQT(ph)PPVSPAPQPT(ph)EERLPSSPVYEDAASFK ddPTM_HeLa_CUDC101_4h_R1 2 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 2 0 T(0.171)QT(0.71)PPVS(0.299)PAPQPT(0.615)EERLPS(0.086)S(0.078)PVY(0.041)EDAASFK;T(0.263)QT(0.397)PPVS(0.344)PAPQPT(0.909)EERLPS(0.047)S(0.033)PVY(0.007)EDAASFK ; 81.304 1.45E-06 237970000 4382.1 4293.4 3854.7 4560.5 4945.8 4326.4 4160.1 4503.2 4304.4 3729.9 TRUE FALSE FALSE 3868.436881 4425.674565 4063.096742 4746.496902 4580.958187 4243.881128 4320.556451 5015.826085 4126.97081 3707.714389 1.043348132 1.193639558 1.095849441 1.280167889 1.235520784 1.144608425 1.165288368 1.352808107 1.113076785 1 11.8563144 -7.116668949 0.921659732 1.009862357 1.225729327 0.482698235 0.073411798 0.215743562 0.363226539 0.01383839 0.017822798 7.64E-08 7.116668949 0.21586697 KCIRTPK(ac)ISK ddPTM_HeLa_CUDC101_4h_R1 1 KCIRTPKISK 10 3 P29279-2;P29279 P29279-2 CTGF Connective tissue growth factor 0 1 KCIRTPK(1)ISK 71.221 0.027422 0 1560.5 3489.8 4802.5 6314.7 2397.8 3552.2 2625.8 2121.7 559.25 535.87 FALSE TRUE FALSE 1377.580556 3597.316602 5062.137677 6572.24076 2220.919071 3484.447703 2727.077986 2363.225752 536.1974783 532.6826214 2.586118826 6.753208115 9.503102736 12.33800484 4.169310171 6.54132041 5.119517469 4.436461144 1.006598407 1 9.057132404 -7.315764892 3.237239724 1.669630781 7.118287212 0.538096462 2.326465429 0.152477491 3.108843881 0.435127152 0.503790002 4.83E-08 7.315764892 5.448656431 VLPSIS(ph)LSPGPQPPK ddPTM_HeLa_CUDC101_4h_R1 1 VLPSISLSPGPQPPK 15 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 1 0 VLPSIS(0.5)LS(0.5)PGPQPPK 164.93 2.74E-05 5934300 1885.3 1317.2 1319.1 1440.5 1208.4 1501.9 1538.6 907.72 1326.6 1341.7 TRUE FALSE FALSE 1664.307992 1357.781371 1390.414536 1499.249816 1119.258739 1473.25376 1597.944317 1011.051176 1271.916987 1333.719509 1.247869572 1.018041171 1.042508959 1.124111784 0.839200996 1.104620387 1.198111227 0.758068821 0.953661529 1 10.38123957 -7.115555098 17.56830953 1.117896145 1.021574164 0 0.14473923 4.672167418 693.1667534 0.024032353 0.029433728 7.66E-08 7.115555098 -0.09632198 ELEKPIQSKPQSPVIQAAAVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 ELEKPIQSKPQSPVIQAAAVSPK 23 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 ELEKPIQSKPQSPVIQAAAVS(1)PK;ELEKPIQSKPQS(0.001)PVIQAAAVS(0.999)PK ; 126.04 1.76E-07 279396000 9801.7 7028.3 7192.9 6953.8 7466 7553.8 7089.2 6344.5 6262 7128.3 TRUE FALSE FALSE 8652.759584 7244.833592 7581.769931 7237.406021 6915.248054 7409.72385 7362.632819 7066.732235 6003.87771 7085.900555 1.221123486 1.022429476 1.069979726 1.021381258 0.975916611 1.045699667 1.03905393 0.997294865 0.847299177 1 12.7907355 -7.115073529 21.31695764 1.105334827 1.025645685 0 0.09845783 9.363302342 1710.270165 0.01392461 0.017054112 7.67E-08 7.115073529 -0.079689142 T(ph)SPDSLR ddPTM_HeLa_CUDC101_4h_R1 1 TSPDSLR 7 0 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 0 T(0.949)S(0.051)PDSLR 148.99 0.038657 68413000 5678.4 4897.5 4690.1 4526.1 4264.4 4285.2 4365.5 3821.4 5315.7 5731 TRUE FALSE FALSE 5012.78656 5048.38617 4943.660993 4710.693921 3949.823708 4203.46695 4533.878797 4256.412729 5096.584596 5696.911757 0.879912973 0.886161904 0.867779106 0.826885534 0.69332717 0.737850107 0.795848521 0.747143876 0.894622352 1 12.47596434 -7.114522827 0.29442598 1.016390387 0.70474037 0.695762007 0.047855142 0.465125385 0.128969684 0.042594842 0.055301097 7.68E-08 7.114522827 -0.311650017 GPAADPSS(ph)PGTSGVGPAAGAGDSR ddPTM_HeLa_CUDC101_4h_R1 2 GPAADPSSPGTSGVGPAAGAGDSR 24 0 A0A0U1RRM4 A0A0U1RRM4 1 0 GPAADPS(0.006)S(0.936)PGT(0.055)S(0.003)GVGPAAGAGDSR;GPAADPS(0.007)S(0.993)PGTSGVGPAAGAGDSR ; 243.09 4.59E-49 33189000 3975.2 3161.2 2973 3149.6 3290.7 2964.1 3196.5 3093.3 3036.6 3429.6 TRUE FALSE FALSE 3509.233082 3258.592825 3133.729373 3278.054302 3047.951617 2907.564731 3319.790076 3445.428768 2911.430063 3409.200587 1.029341921 0.955823145 0.91919771 0.961531661 0.894037045 0.852858216 0.973773761 1.010626591 0.85399201 1 11.73521777 -7.112664274 4.138546382 1.013733699 0.932887847 0 0.065308675 0.165823106 4.868079796 0.007261798 0.009000072 7.71E-08 7.112664274 -0.080845852 SSSPLPTVQLHPQS(ph)PTAGK ddPTM_HeLa_CUDC101_4h_R1 2 SSSPLPTVQLHPQSPTAGK 19 0 A0A087X2C4;H0YAH0;O60245;O60245-2 A0A087X2C4 PCDH7 Protocadherin-7 1 0 SSSPLPT(0.011)VQLHPQS(0.916)PT(0.072)AGK;SSSPLPTVQLHPQS(0.75)PT(0.25)AGK ; 95.9 0.0014219 35856000 4242.1 3230.6 2356.02 3042.2 3252.3 3346.2 3095 3095.2 2388.3 3702.1 TRUE FALSE FALSE 3744.847469 3330.130957 2483.393568 3166.274066 3012.384308 3282.37681 3214.375187 3447.545057 2289.853263 3680.079745 1.017599544 0.904907281 0.674820585 0.860381917 0.818564954 0.891930892 0.873452591 0.936812595 0.622229251 1 11.84552131 -7.112598082 4.456220142 1.007876826 0.842306706 0 0.138165277 0.1185005 3.85530336 0.010796124 0.013355592 7.72E-08 7.112598082 -0.16557012 RDS(ph)PTYDPYK ddPTM_HeLa_CUDC101_4h_R1 2 RDSPTYDPYK 10 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 RDS(0.99)PT(0.01)YDPYK;RDS(0.981)PT(0.018)Y(0.001)DPYK ; 113.25 0.003817 51018000 28943 22097.3 21345.6 22183 22398.9 22336 21305 19534.4 23057 24736 TRUE FALSE FALSE 25550.34541 22778.09162 22499.6077 23087.71862 20746.57777 21909.97801 22126.74099 21758.11714 22106.5807 24588.86917 1.039102093 0.926357835 0.915032226 0.938949997 0.843738589 0.89105269 0.899868181 0.884876689 0.899048287 1 14.58571777 -7.112462282 3.391015046 1.018443608 0.896112185 0.313097054 0.04508877 0.07467075 1.602514297 0.004638293 0.005776673 7.72E-08 7.112462282 -0.122331423 LSSSSATLLNS(ph)PDRAR ddPTM_HeLa_CUDC101_4h_R1 4 LSSSSATLLNSPDRAR 16 1 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40 Q14244-5 MAP7 Ensconsin 1 0 LSSSSAT(0.17)LLNS(0.83)PDRAR;LSSSSATLLNS(1)PDRAR;LSSSSATLLNS(1)PDRAR;LSSSSAT(0.139)LLNS(0.861)PDRAR ;;; 136.61 0.0002172 234766700 8340.2 9007.7 9279.6 8745.3 12478.1 8714.1 9220.9 8771.5 9112.5 8498 TRUE FALSE FALSE 7362.574399 9285.21656 9781.283245 9101.971134 11557.61542 8547.893061 9576.553202 9770.012104 8736.878893 8447.453518 0.871573236 1.099173442 1.157897256 1.077481056 1.368177451 1.01188992 1.133661544 1.156562991 1.034261849 1 13.04430079 -7.111791347 4.730087575 0.939737369 1.148939865 0.414791378 0.094802313 0.132565921 4.672935124 0.015388013 0.01901053 7.73E-08 7.111791347 0.209202496 KDDEENYLDLFSHK ddPTM_HeLa_CUDC101_4h_R1 2 KDDEENYLDLFSHK 14 1 Q07666-2;Q07666;Q07666-3 Q07666-2 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 0 0 ; ; 123.68 0.00010831 67982000 10356 9496.8 10737.6 9865.6 11554.2 9926.1 9186.4 9008.2 10106.5 11817.4 FALSE FALSE TRUE 9142.085379 9789.385152 11318.10714 10267.96181 10701.86969 9736.776181 9540.722525 10033.65708 9689.905792 11747.10958 0.778241262 0.833344159 0.96348017 0.874084109 0.911021525 0.828865698 0.812176175 0.854138374 0.824875747 1 13.5200182 -9.52166101 1.279082336 0.999940375 0.850117683 0 0.072591259 0.302420874 0.886413542 0.039251044 0.009437662 3.01E-10 9.52166101 -0.149822693 PGWLSS(ph)PTLGR ddPTM_HeLa_CUDC101_4h_R1 2 PGWLSSPTLGR 11 0 C9J266;Q5XPI4;Q5XPI4-2;C9JS59 C9J266 RNF123 E3 ubiquitin-protein ligase RNF123 1 0 PGWLS(0.045)S(0.945)PT(0.01)LGR;PGWLS(0.003)S(0.903)PT(0.094)LGR ; 136.81 0.0015847 243300000 12473.4 8017.6 7872.6 8239.5 8050.6 7837.7 7319 7195.4 8328.8 8936.9 TRUE FALSE FALSE 11011.28696 8264.612753 8298.216569 8575.542424 7456.723277 7688.208931 7601.296282 8014.495251 7985.483339 8883.742921 1.239487349 0.93030751 0.934090129 0.96530736 0.839367296 0.865424517 0.855641181 0.902152991 0.898887261 1 13.11695193 -7.111642297 6.26828242 1.112842755 0.894636817 0.27663337 0.093128076 0.135792852 6.711772081 0.015781755 0.019396956 7.73E-08 7.111642297 -0.218205938 NIIHGS(ph)DSVESAEK ddPTM_HeLa_CUDC101_4h_R1 3 NIIHGSDSVESAEK 14 0 P15531;P15531-2 P15531 NME1 Nucleoside diphosphate kinase A 1 0 NIIHGS(0.943)DS(0.057)VESAEK;NIIHGS(0.934)DS(0.066)VESAEK;NIIHGS(0.999)DS(0.001)VESAEK ;; 206.81 1.39E-23 142264000 22446.7 15603 14763.3 14796.4 17758.5 16895.9 13696.5 10794.7 17784.4 18113.6 TRUE FALSE FALSE 19815.53185 16083.70994 15561.44865 15399.86115 16448.49083 16573.63886 14224.77859 12023.52501 17051.3195 18005.8595 1.100504636 0.893248664 0.86424359 0.855269427 0.913507674 0.92045808 0.790008308 0.667756239 0.946987257 1 14.13617885 -7.110621889 4.119812258 1.047175902 0.843586521 0.503224805 0.077895074 0.119970121 3.509548531 0.013222461 0.01639506 7.75E-08 7.110621889 -0.203589382 GGGAPWPGGAQT(ph)YSPSSTCR ddPTM_HeLa_CUDC101_4h_R1 1 GGGAPWPGGAQTYSPSSTCR 20 0 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 GGGAPWPGGAQT(0.676)YS(0.285)PS(0.034)S(0.004)T(0.001)CR 186.98 3.62E-11 8375400 693.52 808.81 505.42 716.75 874.96 653.69 599.08 877.66 862.97 495.34 TRUE FALSE FALSE 612.2266369 833.7284774 532.744534 745.9821631 810.415944 641.2219524 622.1867163 977.5692668 827.3980113 492.3936957 1.243368147 1.693215175 1.081948325 1.515011605 1.645869862 1.302254594 1.263596024 1.985340745 1.680358661 1 8.94366848 -7.110467223 0.063148762 1.93E-11 2.632026526 0 0.316957896 17.57608521 0.89332992 17.56178899 18.92093341 7.75E-08 7.110467223 2.632026526 KDELSDWSLAGEDDRDSR ddPTM_HeLa_CUDC101_4h_R1 2 KDELSDWSLAGEDDRDSR 18 2 B4DXZ6;P51114-3;P51114;H7C4S4;E7EU85;E9PFF5;P51114-2 B4DXZ6 FXR1 Fragile X mental retardation syndrome-related protein 1 0 0 ; ; 67.846 0.010396 42226000 6686.7 5654 5080 5923.6 5623.1 5524.5 5115.5 4156.2 5915.6 6094.1 FALSE FALSE TRUE 5902.895162 5828.193038 5354.640166 6165.190012 5208.295116 5419.129367 5312.806549 4629.325008 5671.756464 6057.852022 0.974420494 0.96208904 0.883917294 1.01771882 0.859759383 0.89456285 0.877011609 0.764185885 0.936265271 1 12.56459062 -1.886303095 0.280864414 0.997761965 2.49E-18 0.621270457 0.044616241 10.50956962 0.209667893 0.016280904 4.733655722 0.012992625 1.886303095 -0.997761965 DSGNWDTSGSELS(ph)EGELEK ddPTM_HeLa_CUDC101_4h_R1 2 DSGNWDTSGSELSEGELEK 19 0 O75400-2;O75400-3;O75400 O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 DSGNWDT(0.001)S(0.013)GS(0.22)ELS(0.766)EGELEK;DSGNWDTS(0.003)GS(0.049)ELS(0.948)EGELEK ; 90.718 0.0013016 3566500 3594.6 2814.2 2774.6 2719.3 2918.4 3127.2 2536.9 2590 2989.8 3138 TRUE FALSE FALSE 3173.246437 2900.902166 2924.603269 2830.204808 2703.115446 3067.55387 2634.749083 2884.835131 2866.559179 3119.335036 1.017282979 0.92997454 0.937572667 0.9073103 0.866567847 0.983399934 0.84465088 0.924823752 0.918964826 1 11.6070228 -7.11012051 2.478099016 1.008476925 0.908663685 0.23311337 0.045760406 0.130144589 1.549394591 0.005778837 0.007236903 7.76E-08 7.11012051 -0.099813241 KDESFLGK(ac)LGGTLAR ddPTM_HeLa_CUDC101_4h_R1 1 KDESFLGKLGGTLAR 15 2 Q9HBI1 Q9HBI1 PARVB Beta-parvin 0 1 KDESFLGK(1)LGGTLAR 130.21 0.0079837 1586100 291.7 216.64 480.77 705.1 681.32 618.72 857.97 1203.4 0 173.83 FALSE TRUE FALSE 257.5073682 223.3144216 506.7618804 733.8570257 631.060381 606.9189469 891.0621903 1340.390192 0 172.7960514 1.49023873 1.29235836 2.932716785 4.246954833 3.652053249 3.512342683 5.156727732 7.757064936 0 1 7.432926441 -1 0.261113487 0.864898263 44.97375311 0.890178718 0.723130968 10.20191758 0.128589857 0.342249269 203.0574875 0.1 1 44.10885485 PIS(ph)PGLSYASHTVGFTPPTSLTR ddPTM_HeLa_CUDC101_4h_R1 1 PISPGLSYASHTVGFTPPTSLTR 23 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 PIS(0.931)PGLS(0.05)Y(0.018)ASHTVGFTPPTSLTR 78.583 0.00053018 15331000 942.2 565.98 414.67 322.59 565.69 458.69 506.54 446.88 536.68 814.4 TRUE FALSE FALSE 831.7567443 583.4171729 437.0883145 335.7466146 523.9601757 449.9412525 526.0774175 497.7510128 514.5578232 809.5559126 1.027423469 0.720663223 0.539911213 0.414729371 0.647219256 0.555787742 0.649834569 0.614844516 0.635605046 1 9.660986915 -7.109737898 3.049867207 1.013729126 0.571237022 0.454093646 0.135912264 0.052632927 0.93605364 0.011333727 0.014155403 7.77E-08 7.109737898 -0.442492105 KDGIQTRNRK ddPTM_HeLa_CUDC101_4h_R1 1 KDGIQTRNRK 10 3 P15976-3;P15976 P15976-3 GATA1 Erythroid transcription factor 0 0 82.417 0.01656 0 2504.2 1621.5 1638.2 1699.5 2114.2 1761 2136.7 2071.2 2008.2 2135.8 FALSE FALSE TRUE 2210.661472 1671.456493 1726.766047 1768.812956 1958.239678 1727.411859 2219.113235 2306.977036 1925.421146 2123.096167 1.041244154 0.787273096 0.813324462 0.833128986 0.922350908 0.813628646 1.045225021 1.086609769 0.906893044 1 11.051954 -7.293253278 24.99346387 1.019476414 0.897395395 0.09062544 0.101068555 685.5807125 538600.4875 0.016985756 0.019424835 5.09E-08 7.293253278 -0.122081019 KDGNASGTTLLEALDCILPPTRPTDKPLR ddPTM_HeLa_CUDC101_4h_R1 2 KDGNASGTTLLEALDCILPPTRPTDKPLR 29 3 Q5VTE0;P68104;A0A087WVQ9;A0A087WV01 Q5VTE0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 0 0 ; ; 97.5 3.42E-09 42523000 8676.6 7439.9 7068.9 6487.4 7220.5 6676.3 6567.9 6435 6854.6 5745.5 FALSE FALSE TRUE 7659.542101 7669.114501 7451.066116 6751.984213 6687.8581 6548.960701 6821.226103 7167.534389 6572.050487 5711.32551 1.341114613 1.342790651 1.304612406 1.182209664 1.170981778 1.146662135 1.194333275 1.254968637 1.150704941 1 12.4796099 -9.441964442 1.192112316 1.00092864 1.24801627 0.362220858 0.079842042 0.271733234 0.694773005 0.054485741 0.013808766 3.61E-10 9.441964442 0.247087629 TSETDDGVVGKS(ph)SDGEDEQQVPK ddPTM_HeLa_CUDC101_4h_R1 2 TSETDDGVVGKSSDGEDEQQVPK 23 1 Q16649 Q16649 NFIL3 Nuclear factor interleukin-3-regulated protein 1 0 TSETDDGVVGKS(0.937)S(0.063)DGEDEQQVPK;TSETDDGVVGKS(0.848)S(0.152)DGEDEQQVPK ; 109.22 5.49E-06 27502000 3129.9 3399.1 3594.1 3805.2 4376.9 3988.7 3560.6 2460 3380.8 3090.8 TRUE FALSE FALSE 2763.017867 3503.822242 3788.407918 3960.392503 4054.024807 3912.622193 3697.933535 2740.036456 3241.441993 3072.415784 0.899298162 1.140412785 1.233038815 1.289015804 1.319490945 1.273467678 1.203591504 0.891818246 1.055014106 1 11.58515775 -7.109283179 4.066865056 0.9528264 1.212958563 0.389711011 0.118577036 0.140302959 4.035662028 0.019698633 0.024439244 7.78E-08 7.109283179 0.260132162 KDGSASAAAK(ac)K(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 KDGSASAAAKKK 12 3 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2;Q68E03 D6REM6 MATR3;DKFZp686L22104 Matrin-3 0 2 ; KDGSASAAAK(1)K(1)K;KDGSASAAAK(1)K(1)K 122.1 0.00081021 3191700 2747.5 2479.1 2434.62 3230.5 2865.8 2699 2475.91 1781.9 1661.54 1719 FALSE TRUE FALSE 2425.442215 2555.478133 2566.242922 3362.253753 2654.395643 2647.521072 2571.406678 1984.744293 1593.050618 1708.775312 1.419403826 1.495502724 1.501802434 1.967639473 1.55339068 1.549367582 1.504824339 1.161501035 0.932276237 1 10.73874699 -8.555442552 0.652619813 1.007771664 1.551271856 0.579871176 0.187165714 0.418436073 0.362319266 0.111358438 0.046048676 2.78E-09 8.555442552 0.543500192 VSQGSAESLS(ph)PSFR ddPTM_HeLa_CUDC101_4h_R1 1 VSQGSAESLSPSFR 14 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 VSQGS(0.001)AES(0.046)LS(0.711)PS(0.243)FR 85.176 0.019828 32636000 1535 1357.4 1427.7 1302 1820.2 1390.9 1421.1 1320.5 1438.5 1320.9 TRUE FALSE FALSE 1355.069627 1399.219885 1504.885781 1355.101188 1685.927472 1364.3709 1475.912303 1470.820382 1379.204421 1313.043228 1.032006866 1.065631241 1.146105283 1.032030903 1.283984743 1.039090618 1.124039385 1.120161432 1.050387673 1 10.3586987 -7.108411588 1.230759624 1.010785589 1.126526214 0.291969155 0.066479709 0.308899708 0.905538773 0.011802717 0.015010982 7.79E-08 7.108411588 0.115740625 KDGVCGPPPSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 KDGVCGPPPSKK 12 2 Q08J23;Q08J23-2;Q08J23-3;A0A140T9Z1 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 1 KDGVCGPPPSK(1)K 122.97 0.0021991 3326600 2671.5 2634.1 3361.3 3241.6 3083.3 2796.6 2660.6 3535.7 2010.3 1774.7 FALSE TRUE FALSE 2358.35082 2715.253499 3543.022045 3373.806459 2855.851102 2743.259514 2763.220233 3938.189796 1927.434583 1764.144005 1.336824439 1.539133705 2.008351945 1.912432573 1.618831055 1.555008835 1.566323511 2.232351658 1.092560798 1 10.78475262 -7.50585942 1.043409091 1.092353413 1.78879949 0.66724791 0.212440828 0.204593247 0.450715098 0.050734537 0.053362711 3.12E-08 7.50585942 0.696446076 S(ph)FSGLIK ddPTM_HeLa_CUDC101_4h_R1 1 SFSGLIK 7 0 Q14CB8-4;Q14CB8-6;Q14CB8-7;Q14CB8-3;Q14CB8;Q14CB8-2 Q14CB8-4 ARHGAP19 Rho GTPase-activating protein 19 1 0 S(1)FSGLIK 88.948 0.034628 7956600 1709.8 1222.5 1238.9 1278.4 1275.8 1310.9 1075.7 1065.9 1115.4 1612.8 TRUE FALSE FALSE 1509.379836 1260.163776 1305.878681 1330.538678 1181.686776 1285.896767 1117.190109 1187.237747 1069.42274 1603.206994 0.941475331 0.78602687 0.814541532 0.829923199 0.737076859 0.802077817 0.696847078 0.740539277 0.667052192 1 10.64674499 -7.107902696 0.593781789 0.996216461 0.736287993 0 0.110046619 0.164322383 0.126720524 0.011402675 0.015265238 7.80E-08 7.107902696 -0.259928468 EEAENTLQS(ph)FR ddPTM_HeLa_CUDC101_4h_R1 1 EEAENTLQSFR 11 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 EEAENT(0.002)LQS(0.998)FR 102.33 0.011556 2187700 1317 980.66 923.22 969.03 1060.4 1166.1 809.33 853.46 995.06 1062.8 TRUE FALSE FALSE 1162.623256 1010.872972 973.1320658 1008.551232 982.1764046 1143.858585 840.5461292 950.6144366 954.0432056 1056.478418 1.100470427 0.956832581 0.921109271 0.954634959 0.929670107 1.082708899 0.795611263 0.899795415 0.903040885 1 10.04504758 -7.107787239 5.629556403 1.047240344 0.932907744 0.048478624 0.083021981 0.1935354 8.586458353 0.012204267 0.01502741 7.80E-08 7.107787239 -0.114332601 SCVPLNTNELNS(ph)NENIHYK ddPTM_HeLa_CUDC101_4h_R1 1 SCVPLNTNELNSNENIHYK 19 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 SCVPLNTNELNS(1)NENIHYK 94.276 0.001608 4989300 2658.6 2803.9 3303 3312.7 3547.9 2837 2532.2 3147.4 2350.8 2463.7 TRUE FALSE FALSE 2346.962938 2890.284836 3481.570171 3447.806225 3286.178485 2782.888952 2629.867802 3505.687294 2253.899029 2449.045803 0.958317291 1.180167734 1.421602718 1.407816146 1.341819937 1.1363156 1.073833654 1.431450277 0.920317222 1 11.25800404 -7.107501461 3.867527414 0.980691633 1.291656578 0.640190807 0.11402183 0.1197134 3.198976403 0.019809625 0.024619066 7.81E-08 7.107501461 0.310964945 LDFIESDS(ph)PCSSEALSKK ddPTM_HeLa_CUDC101_4h_R1 2 LDFIESDSPCSSEALSKK 18 1 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 LDFIES(0.005)DS(0.993)PCS(0.001)SEALSKK;LDFIES(0.096)DS(0.858)PCS(0.017)S(0.017)EALS(0.011)KK ; 111.66 0.00022116 80290000 2683.5 3002.6 2378.4 2671.8 3833.2 2906.5 2711.1 3032.9 3131.6 2175.3 TRUE FALSE FALSE 2368.944198 3095.106547 2506.983498 2780.767553 3550.432473 2851.063355 2815.668035 3378.153077 3002.514123 2162.361219 1.095535832 1.431355002 1.159373132 1.2859866 1.641923857 1.318495416 1.302126588 1.562251971 1.388534948 1 11.07839183 -7.107318104 0.631975074 1.009713492 1.436900165 0.129519206 0.176890889 0.316242458 0.270753543 0.036337837 0.04846633 7.81E-08 7.107318104 0.427186673 KDLYANTVLSGGTTMYPGIADR ddPTM_HeLa_CUDC101_4h_R1 3 KDLYANTVLSGGTTMYPGIADR 22 1 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;; ;; 123.17 5.40E-07 115128000 6761.4 6863.2 5965.6 6485.2 7217.3 6675 5982.6 6373.7 6658.7 7192.4 FALSE FALSE TRUE 5968.838942 7074.647057 6288.118381 6749.694487 6684.894158 6547.685496 6213.350886 7099.256245 6384.225568 7149.619285 0.834847102 0.989513815 0.879503947 0.944063483 0.935000018 0.915808973 0.869046398 0.992955843 0.892946227 1 12.80365071 -9.684334962 1.562424682 0.999872256 0.906615034 0 0.058704891 0.381446139 1.681326414 0.036242653 0.008107079 2.07E-10 9.684334962 -0.093257223 KDNDFIYHDR ddPTM_HeLa_CUDC101_4h_R1 1 KDNDFIYHDR 10 1 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 0 93.345 0.016039 54209000 32555 26786 28379 28594 30774 30238 27148 27870 29228 29270 FALSE FALSE TRUE 28738.95225 27611.24491 29913.25458 29760.18691 28503.86333 29661.26053 28195.10745 31042.60815 28023.20947 29095.90074 0.987732001 0.948973711 1.028091718 1.02283092 0.979652206 1.019430909 0.969040543 1.066906587 0.963132564 1 14.82852829 KDPELWGSVLLESNPYR ddPTM_HeLa_CUDC101_4h_R1 1 KDPELWGSVLLESNPYR 17 1 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 73.953 0.021379 8881900 2156.9 1435.1 1360.3 1557.1 1641.3 1717.3 1519.1 1427.5 1658.8 2046.3 FALSE FALSE TRUE 1904.071452 1479.31373 1433.841933 1620.605268 1520.224569 1684.545364 1577.692196 1590.00083 1590.423562 2034.128517 0.936062513 0.727246935 0.704892499 0.796707413 0.747359155 0.828141069 0.775610874 0.781661934 0.781869754 1 10.99019512 -7.371693508 4.101353308 0.972667727 0.767012061 0.371682763 0.06957963 0.059708183 1.699607536 0.006957017 0.007908705 4.25E-08 7.371693508 -0.205655666 SY(ph)S(ph)LAS(ph)GAGGGGSK ddPTM_HeLa_CUDC101_4h_R1 1 SYSLASGAGGGGSK 14 0 H3BPA5;Q96S21-2;Q96S21 H3BPA5 RAB40C Ras-related protein Rab-40C 3 0 S(0.35)Y(0.706)S(0.972)LAS(0.972)GAGGGGSK 73.841 0.0021251 0 1856.4 1477.3 1394.9 1535.1 1355.7 1617.3 1464.9 1490.5 1682.5 1554.3 TRUE FALSE FALSE 1638.795606 1522.813862 1470.312513 1597.708013 1255.692712 1586.452697 1521.401684 1660.172495 1613.146638 1545.054954 1.060671403 0.985604983 0.951624736 1.034078438 0.812717184 1.026793702 0.984690984 1.074507085 1.044070719 1 10.59344244 -7.106767197 7.057924566 1.028575464 0.977068933 0.114488592 0.067100911 0.427655732 24.97627578 0.010907383 0.013389976 7.82E-08 7.106767197 -0.051506531 DYNASASTIS(ph)PPSSMEEDKFSR ddPTM_HeLa_CUDC101_4h_R1 2 DYNASASTISPPSSMEEDKFSR 22 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DYNASAS(0.001)T(0.004)IS(0.993)PPS(0.001)SMEEDKFSR;DYNASAS(0.001)T(0.004)IS(0.986)PPS(0.009)S(0.001)MEEDKFSR ; 98.924 0.00010167 174956000 3402 2370.55 2219.84 2113.06 2255.89 2143.11 2425.02 2084.95 3247.42 2877.78 TRUE FALSE FALSE 3003.222717 2443.583836 2339.851265 2199.23972 2089.477489 2102.233747 2518.553834 2322.29228 3113.559973 2860.662837 1.049834562 0.854201972 0.817940246 0.768786762 0.730417252 0.734876449 0.880409184 0.811802164 1.088405083 1 11.48213375 -7.106634148 3.064471688 1.023725724 0.789650092 0.85077708 0.047507502 0.071208519 1.27928213 0.008127986 0.010159978 7.82E-08 7.106634148 -0.234075633 VLLS(ph)DSNLHDA ddPTM_HeLa_CUDC101_4h_R1 2 VLLSDSNLHDA 11 0 H3BV90;Q6FI81-3;Q6FI81;Q6FI81-2 H3BV90 CIAPIN1 Anamorsin 1 0 VLLS(0.976)DS(0.024)NLHDA;VLLS(0.56)DS(0.44)NLHDA ; 127.52 0.0026159 26617000 9551.4 7309.7 6262.4 5874.8 7287.6 6739 7701 7479.5 7117.6 8394.9 TRUE FALSE FALSE 8431.799371 7534.903193 6600.964287 6114.399737 6750.008267 6610.464803 7998.03015 8330.936047 6824.209515 8344.966761 1.010405387 0.902927886 0.791011453 0.732705104 0.808871798 0.792149926 0.958425645 0.998318661 0.817763535 1 13.02669059 -7.106264205 3.546462186 1.004876801 0.842639617 0.06912474 0.095673007 0.162798528 3.786780856 0.013648084 0.017005747 7.83E-08 7.106264205 -0.162237185 SAESPT(ph)SPVTSETGSTFK ddPTM_HeLa_CUDC101_4h_R1 1 SAESPTSPVTSETGSTFK 18 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 SAES(0.401)PT(0.597)S(0.002)PVTSETGSTFK 157.37 0.00017575 15780000 2554.6 1858.7 1543.6 1695.4 2255.9 1984.7 1473.2 1759.5 2036.9 2087 TRUE FALSE FALSE 2255.153661 1915.964344 1627.051685 1764.54574 2089.486751 1946.845154 1530.021817 1959.794368 1952.93812 2074.586431 1.087037699 0.923540381 0.784277609 0.850553013 1.007182309 0.938425666 0.737506905 0.944667495 0.941362621 1 11.01860805 -7.104612818 5.027506106 1.040653904 0.876492551 0.319301752 0.08244057 0.144513647 5.63815653 0.013249678 0.016357319 7.86E-08 7.104612818 -0.164161352 GVS(ph)GDRDENSFSLNSSISSSAR ddPTM_HeLa_CUDC101_4h_R1 2 GVSGDRDENSFSLNSSISSSAR 22 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 GVS(0.999)GDRDENS(0.001)FSLNSSISSSAR;GVS(1)GDRDENSFSLNSSISSSAR ; 89.659 0.00027579 37926000 414.63 455.15 444.55 488.93 525.55 501.9 478.09 472.15 464.88 403.89 TRUE FALSE FALSE 366.0276999 469.172632 468.5837177 508.8706787 486.7812235 492.3270937 496.5300914 525.8976475 445.7174496 401.4876443 0.911678616 1.168585481 1.167118651 1.267462862 1.212443846 1.226257148 1.236725709 1.309872558 1.110164798 1 8.64921178 -7.104000415 3.117452011 0.958260621 1.23465538 0.706275138 0.063411643 0.060687571 1.126692421 0.008238954 0.010303144 7.87E-08 7.104000415 0.276394759 Y(ph)RFQLQAT(ph)T(ph)K ddPTM_HeLa_CUDC101_4h_R1 5 YRFQLQATTK 10 1 P32004-3;P32004-2;P32004 P32004-3 L1CAM Neural cell adhesion molecule L1 3 0 Y(1)RFQLQAT(1)T(1)K;Y(1)RFQLQAT(1)T(1)K;Y(1)RFQLQAT(1)T(1)K;Y(1)RFQLQAT(1)T(1)K;Y(1)RFQLQAT(1)T(1)K ;;;; 64.841 0.028931 1237443000 15616.4 35472.2 24384.5 39268.6 55583.6 52089.2 45415.9 25344.6 44797.8 4014.23 TRUE FALSE FALSE 13785.86926 36565.05644 25702.79983 40870.14324 51483.30857 51095.6853 47167.60648 28229.72682 42951.21572 3990.353181 3.454799272 9.163363435 6.441234312 10.24223706 12.90194282 12.80480273 11.82040895 7.074493293 10.76376295 1 11.96230073 -7.10394073 0.821072702 1.564330046 11.31234496 0.160812555 3.49387107 0.162782844 0.221191935 0.452485032 0.592254665 7.87E-08 7.10394073 9.748014912 TGVTSTS(ph)DS(ph)EEEGDDQEGEKKR ddPTM_HeLa_CUDC101_4h_R1 2 TGVTSTSDSEEEGDDQEGEKKR 22 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 2 0 TGVT(0.007)S(0.008)T(0.057)S(0.933)DS(0.996)EEEGDDQEGEKKR;T(0.002)GVT(0.05)S(0.25)T(0.257)S(0.63)DS(0.811)EEEGDDQEGEKKR ; 88.486 0.0026757 98976000 5010.4 5276.2 5246 5409.5 6065.6 5608.3 5448.5 5978.8 5277.6 4781.3 TRUE FALSE FALSE 4423.088507 5438.753468 5529.614628 5630.122792 5618.152772 5501.331022 5658.65047 6659.402425 5060.055094 4752.860615 0.930616079 1.144311586 1.163428738 1.184575616 1.182057129 1.157477879 1.190577829 1.401135645 1.064633597 1 12.21458038 -7.103574459 3.14239715 0.967184352 1.205554219 0.610073348 0.075053823 0.10087396 1.900782703 0.011850106 0.014818389 7.88E-08 7.103574459 0.238369867 EGPVLAT(ph)SSGAGVFK ddPTM_HeLa_CUDC101_4h_R1 1 EGPVLATSSGAGVFK 15 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 EGPVLAT(0.74)S(0.191)S(0.069)GAGVFK 173.25 2.57E-06 8082100 3263.5 1983.2 1982 2005.6 1520 1608.6 1713.3 2256.5 1929.9 2389 TRUE FALSE FALSE 2880.957477 2044.300041 2089.152915 2087.397037 1407.872628 1577.918635 1779.382555 2513.370839 1850.348705 2374.790122 1.213141932 0.860833984 0.879721073 0.878981691 0.592840864 0.664445511 0.749279921 1.058354932 0.779163046 1 11.2135843 -7.103235649 4.396249411 1.10022394 0.793867733 0.133305052 0.164500057 0.143769304 4.690007708 0.02426825 0.030072479 7.88E-08 7.103235649 -0.306356207 ENSPAVS(ph)PT(ph)TNSTAPFGLKPR ddPTM_HeLa_CUDC101_4h_R1 1 ENSPAVSPTTNSTAPFGLKPR 21 1 Q9Y2L9-2;Q9Y2L9;Q9Y2L9-3 Q9Y2L9-2 LRCH1 Leucine-rich repeat and calponin homology domain-containing protein 1 2 0 ENS(0.324)PAVS(0.942)PT(0.685)T(0.049)NSTAPFGLKPR 93.753 0.0006542 14436000 4563.7 3252.7 2692.3 3322.7 3327.4 3299.1 3038.5 2787.6 3285.1 3692.7 TRUE FALSE FALSE 4028.750004 3352.911832 2837.853882 3458.214068 3081.944331 3236.175164 3155.695963 3104.929116 3149.686788 3670.735656 1.097532043 0.913416859 0.773102219 0.942103816 0.839598549 0.881614877 0.859690334 0.845860178 0.858053285 1 11.84185351 -7.103065015 4.912046109 1.045575383 0.859988036 0.281102963 0.074576891 0.080797936 3.075386985 0.008377598 0.010350105 7.89E-08 7.103065015 -0.185587347 S(ph)SSPELVTHLK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPELVTHLK 11 0 E9PNR6;H0YE29;Q07960 E9PNR6 ARHGAP1 Rho GTPase-activating protein 1 1 0 S(0.442)S(0.442)S(0.116)PELVTHLK 190.66 3.27E-11 124780000 5666.1 4490.8 4365.6 4140.1 5277.3 4317.5 4535.2 4035.5 4529.1 4830.7 TRUE FALSE FALSE 5001.928347 4629.156225 4601.617541 4308.951173 4888.004093 4235.150881 4710.124183 4494.885008 4342.408581 4801.966782 1.041641597 0.964012546 0.95827767 0.897330483 1.017917098 0.88196172 0.980873962 0.936050833 0.904297922 1 12.22940971 -7.102842207 4.174520411 1.019554709 0.946141761 0 0.05226721 0.148745734 4.502219264 0.005947827 0.007382071 7.89E-08 7.102842207 -0.073412948 GLAEVQQDGEAEEGAT(ph)SDGEK ddPTM_HeLa_CUDC101_4h_R1 1 GLAEVQQDGEAEEGATSDGEK 21 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 GLAEVQQDGEAEEGAT(0.956)S(0.044)DGEK 101.86 0.00024241 12476000 1998.6 1563.5 1151.5 1325.2 1585.5 1670.6 1427.6 1939.5 1724.7 1730.8 TRUE FALSE FALSE 1764.327138 1611.669582 1213.753573 1379.247384 1468.540824 1638.736088 1482.66301 2160.28484 1653.607136 1720.505125 1.025470434 0.936742099 0.705463504 0.801652587 0.853552136 0.95247382 0.861760299 1.255610814 0.96111724 1 10.74861647 -7.102544406 5.178763516 1.011488984 0.892685533 0.072076112 0.135771186 0.33060372 13.52676851 0.021948694 0.027083119 7.90E-08 7.102544406 -0.118803451 SLS(ph)ELCLAVPAPGIR ddPTM_HeLa_CUDC101_4h_R1 1 SLSELCLAVPAPGIR 15 0 A0A5F9ZHW8;O94827-5;O94827-3;O94827;O94827-7;O94827-2;O94827-6 A0A5F9ZHW8 PLEKHG5 Pleckstrin homology domain-containing family G member 5 1 0 S(0.012)LS(0.988)ELCLAVPAPGIR 147.39 0.00027787 9959800 532.89 562.07 489.15 544.37 774.66 612.25 526.45 540.94 512.24 433.67 TRUE FALSE FALSE 470.425442 579.3867105 515.5949286 566.5717616 717.5148751 600.5723513 546.7553528 602.518423 491.1252504 431.0905116 1.091245178 1.344002466 1.196024767 1.314275648 1.664418158 1.393146764 1.268307555 1.397661064 1.139262492 1 8.751846998 -7.100949018 0.86676716 1.021934935 1.409908809 0.566986921 0.117844135 0.230326083 0.345756385 0.025883654 0.033789808 7.93E-08 7.100949018 0.387973874 EWNGVVSESDS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 1 EWNGVVSESDSPVK 14 0 M0R0Q7;P18858-2;P18858;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 0 EWNGVVSES(0.011)DS(0.989)PVK 101.3 0.0070145 51697000 2427.2 1763.9 1791.3 1429.3 2004.5 2094.8 1444.5 1460 1904.4 2135.9 TRUE FALSE FALSE 2142.687295 1818.243668 1888.143096 1487.593032 1856.632029 2054.84518 1500.214849 1626.200498 1825.899826 2123.195572 1.009180371 0.856371261 0.889293064 0.700638722 0.874451724 0.967807774 0.706583448 0.765921199 0.85997722 1 11.05202155 -7.100280104 1.999666999 1.005757355 0.814751705 0.275995624 0.090149403 0.177171142 1.371263822 0.013683268 0.017238399 7.94E-08 7.100280104 -0.19100565 ILGSAS(ph)PEEEQEKPILDRPTR ddPTM_HeLa_CUDC101_4h_R1 1 ILGSASPEEEQEKPILDRPTR 21 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 ILGS(0.072)AS(0.926)PEEEQEKPILDRPT(0.003)R 67.153 0.0059696 130790000 2766.4 2358.5 1967.3 2361 2755.5 2137.9 2024.7 2134.7 2268.1 2581.5 TRUE FALSE FALSE 2442.126786 2431.162589 2073.658189 2457.291785 2552.232255 2097.123119 2102.793357 2377.705619 2174.607958 2566.145123 0.951671347 0.947398714 0.808082976 0.957580989 0.9945783 0.817227015 0.819436648 0.92656709 0.847422049 1 11.32538705 -7.100041233 0.253958552 1.020031826 0.843440976 0 0.076943936 1.669835366 0.3824725 0.089168044 0.114881455 7.94E-08 7.100041233 -0.17659085 ASTSSSSSSSSNQQTEKET(ph)NTPK ddPTM_HeLa_CUDC101_4h_R1 1 ASTSSSSSSSSNQQTEKETNTPK 23 1 C9J2P0;P51965-3;P51965 C9J2P0 UBE2E1 Ubiquitin-conjugating enzyme E2 E1 1 0 ASTSSSSSSSS(0.001)NQQT(0.028)EKET(0.585)NT(0.386)PK 61.985 0.010051 29008000 1416.8 965.34 744.58 906.34 1027.4 894.32 636.39 628.53 1233.2 1279.3 TRUE FALSE FALSE 1250.724852 995.0809812 784.834247 943.3044627 951.6107489 877.262336 660.9357755 700.0793146 1182.366974 1271.690667 0.983513432 0.782486659 0.61715814 0.741771948 0.748303635 0.689839407 0.519729988 0.550510696 0.92975989 1 10.31253207 -7.098947586 2.49279406 0.994137048 0.649531302 0.799562299 0.072764675 0.0858457 1.037012475 0.013182906 0.016572305 7.96E-08 7.098947586 -0.344605746 RKT(ph)PEASAIGLHQDPELGDAALR ddPTM_HeLa_CUDC101_4h_R1 1 RKTPEASAIGLHQDPELGDAALR 23 2 G5E953;Q13615-3;Q13615-2;Q13615 G5E953 MTMR3 Myotubularin-related protein 3 1 0 RKT(0.881)PEAS(0.119)AIGLHQDPELGDAALR 53.342 0.023975 19182000 1424.2 1689.6 1274 1312.7 1990.5 1769.1 1668.3 1138.2 1351.4 1267.6 TRUE FALSE FALSE 1257.257435 1741.654573 1342.876294 1366.23758 1843.664781 1735.357365 1732.64689 1267.768087 1295.69472 1260.060259 0.997775643 1.382199431 1.065723869 1.084263685 1.463156042 1.377201886 1.375050818 1.006117032 1.028279966 1 10.29927701 -7.098809992 0.881170733 0.989644754 1.281642398 0.281929591 0.156030056 0.406272617 0.628797147 0.034519896 0.045059941 7.97E-08 7.098809992 0.291997644 SDSQASLTVPLS(ph)PQVVR ddPTM_HeLa_CUDC101_4h_R1 2 SDSQASLTVPLSPQVVR 17 0 Q8TEV9-2;Q8TEV9 Q8TEV9-2 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 1 0 SDSQASLT(0.001)VPLS(0.999)PQVVR;SDSQASLT(0.005)VPLS(0.995)PQVVR ; 223.86 8.42E-33 193201000 5020.6 3655.2 3266.1 3985.8 3678.3 3257.11 3433.9 2953.34 3974.2 4218.5 TRUE FALSE FALSE 4432.092879 3767.81238 3442.675245 4148.358152 3406.959137 3194.986053 3566.346673 3289.536288 3810.381794 4193.408174 1.056919025 0.898508379 0.820973085 0.989256943 0.812455882 0.761906764 0.85046495 0.784454112 0.908659886 1 12.03390755 -7.098721728 3.720173567 1.026681731 0.840379203 0.460240021 0.069735454 0.10512277 2.672600697 0.010313096 0.012855777 7.97E-08 7.098721728 -0.186302528 KEDDDGEIDDGEIDDDDLEEGEVKDPSDR ddPTM_HeLa_CUDC101_4h_R1 1 KEDDDGEIDDGEIDDDDLEEGEVKDPSDR 29 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 0 0 109.5 1.10E-10 4843300 1730.8 1655.1 1596.9 1586.6 1711.4 1811.7 1874.7 1487.7 2135.2 1776.8 FALSE FALSE TRUE 1527.918248 1706.091669 1683.233244 1651.308406 1585.153432 1777.144841 1947.007807 1657.053755 2047.186152 1766.231515 0.865072464 0.965950191 0.953008272 0.934933157 0.897477719 1.006178877 1.102351414 0.938186042 1.159070108 1 10.78645875 -5.105724132 5.91561768 0.936306724 1.028150386 0 0.086642751 0.209074527 9.825809316 0.008463151 0.02208321 7.84E-06 5.105724132 0.091843662 KEDEVEEWQHR ddPTM_HeLa_CUDC101_4h_R1 2 KEDEVEEWQHR 11 1 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ; ; 122.69 0.0025007 36016000 18909.7 17649.4 17283.9 18304.6 17559.6 18595.3 16886.5 18446.9 16302.4 20060.4 FALSE FALSE TRUE 16693.13363 18193.15709 18218.31991 19051.14071 16264.26329 18240.62563 17537.81796 20546.82053 15630.40817 19941.07985 0.837122852 0.912345632 0.91360749 0.955371567 0.815615975 0.914726072 0.879481858 1.030376524 0.783829576 1 14.28345592 -9.579087862 1.376095403 0.999764201 0.896421817 0 0.087861168 0.415592406 1.416309051 0.039359788 0.009282517 2.64E-10 9.579087862 -0.103342384 KEDGTFYEFGEDIPEAPER ddPTM_HeLa_CUDC101_4h_R1 3 KEDGTFYEFGEDIPEAPER 19 1 O43776 O43776 NARS "Asparagine--tRNA ligase, cytoplasmic" 0 0 ;; ;; 178.43 4.44E-08 88456000 8390.1 7584.7 7244.6 7531.2 7797.4 7751.3 7085.1 7227.2 8653.7 8090.1 FALSE FALSE TRUE 7406.625197 7818.375617 7636.26499 7838.354889 7222.201337 7603.456867 7358.37468 8049.915235 8296.990823 8041.979725 0.920995259 0.97219539 0.949550391 0.974679762 0.898062614 0.945470783 0.914995428 1.000986761 1.03170999 1 12.97333498 -9.478502569 1.159354176 1.000701198 0.943584903 0.41068019 0.031166239 0.438454381 1.033315463 0.02050488 0.00477656 3.32E-10 9.478502569 -0.057116296 SPTEYHEPVYANPFY(ph)RPTTPQR ddPTM_HeLa_CUDC101_4h_R1 1 SPTEYHEPVYANPFYRPTTPQR 22 1 S4R313;Q9NP74-2;Q9NP74;Q9NP74-3 S4R313 PALMD Palmdelphin 1 0 SPTEYHEPVY(0.078)ANPFY(0.333)RPT(0.295)T(0.295)PQR 50.397 0.021285 28397000 2808.1 2088.8 1679.4 1636.8 2779.7 1924 1818.9 1772.4 2600.8 2435.9 TRUE FALSE FALSE 2478.938775 2153.153452 1770.193444 1703.555779 2574.647069 1887.302906 1889.055582 1974.162852 2493.593923 2421.411158 1.023757889 0.88921431 0.731058597 0.703538419 1.063283722 0.779422734 0.780146559 0.815294356 1.029810206 1 11.24163236 -7.098610022 3.856660099 1.010927374 0.815158122 0.497228304 0.092112483 0.145782754 3.933187792 0.015214579 0.018945097 7.97E-08 7.098610022 -0.195769252 KEDLYLK(ac)PIQR ddPTM_HeLa_CUDC101_4h_R1 2 KEDLYLKPIQR 11 2 P13639 P13639 EEF2 Elongation factor 2 0 1 ; KEDLYLK(1)PIQR;KEDLYLK(1)PIQR 93.839 0.024216 14903400 9431.3 4005.1 3611.4 3174.44 8126.5 6622.1 7310.3 5705.6 7312 5417 FALSE TRUE FALSE 8325.777311 4128.492384 3806.643208 3303.907384 7527.024285 6495.794476 7592.26072 6355.102441 7010.596265 5384.779443 1.546168678 0.766696654 0.706926486 0.613564106 1.39783335 1.206325077 1.409948318 1.180197352 1.301928211 1 12.39467154 -7.259868611 24.99956516 1.257912982 1.045348908 0.127455559 0.288346707 300.0774894 4775893.813 0.058224478 0.069334109 5.50E-08 7.259868611 -0.212564074 RPVS(ph)AIFTESIQPQKPGPGAAATVGK ddPTM_HeLa_CUDC101_4h_R1 1 RPVSAIFTESIQPQKPGPGAAATVGK 26 2 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 RPVS(0.974)AIFT(0.02)ES(0.006)IQPQKPGPGAAATVGK 69.054 0.00017318 23240000 1121.7 1352.4 1422.5 1260.8 1481.8 1818.2 1693.1 855.41 1162.2 1292.7 TRUE FALSE FALSE 990.2160264 1394.065841 1499.404653 1312.220874 1372.490566 1783.520864 1758.403434 952.7864167 1114.293624 1285.010963 0.770589555 1.084866885 1.166841915 1.021174847 1.068076931 1.387942139 1.368395667 0.741461703 0.867147173 1 10.32756495 -7.098066026 5.718614142 0.892097235 1.140148081 0.274478592 0.178822558 0.224478247 10.72672417 0.030738052 0.037861475 7.98E-08 7.098066026 0.248050846 KEEEESQPAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 KEEEESQPAKK 11 2 O75400-2;O75400-3;O75400;F5H578 O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 1 KEEEESQPAK(1)K 134.18 0.00099183 3085800 3151.6 2213.2 3354.4 3626.5 3015.5 2849.6 2996.2 1567 3696.6 4740.6 FALSE TRUE FALSE 2782.174226 2281.386069 3535.749011 3774.404345 2793.052573 2795.248628 3111.764438 1745.380946 3544.224583 4712.4027 0.590393988 0.48412375 0.750307059 0.800951146 0.592702439 0.593168455 0.660335 0.370380262 0.752105626 1 12.20224712 -9.227396533 0.723912306 1.031758728 0.61011737 0.319975725 0.138174017 0.450239261 0.376451084 0.115255567 0.024339961 5.92E-10 9.227396533 -0.421641358 KEEELQAALAR ddPTM_HeLa_CUDC101_4h_R1 2 KEEELQAALAR 11 1 P35579;A0A0C4DFM8;Q7Z406;Q7Z406-6;Q7Z406-2;Q7Z406-5;Q7Z406-4;P35749-4;P35749-3;P35749;P35749-2 P35579;P35749-4 MYH9;MYH14;MYH11 Myosin-9;Myosin-14;Myosin-11 0 0 ; ; 91.701 0.023565 25287900 7614.2 6127.5 5405.3 6025.3 6464.4 6167.4 5156.6 5830.6 5690.3 6707.1 FALSE FALSE TRUE 6721.675018 6316.281012 5697.526868 6271.037778 5987.534091 6049.767121 5355.491789 6494.331936 5455.743426 6667.205871 1.008169711 0.947365528 0.854559913 0.940579592 0.898057478 0.907391678 0.8032588 0.974071007 0.81829533 1 12.70286656 -7.041343575 3.702041784 1.0035665 0.894645649 0 0.072865562 0.111793154 3.18432961 0.006579485 0.008345046 9.09E-08 7.041343575 -0.108920851 EELANERLMT(ph)LK ddPTM_HeLa_CUDC101_4h_R1 1 EELANERLMTLK 12 1 C9IZA8;F5H7J3;B4E3Q4;Q9NZK5 C9IZA8 CECR1 Adenosine deaminase CECR1 1 0 EELANERLMT(1)LK 93.494 0.0099463 28715000 2460 4361.3 2851.8 5591.3 6002.7 6093 5058.6 3499.2 4660.7 1207.9 TRUE FALSE FALSE 2171.642529 4495.666484 3005.976934 5819.337382 5559.89278 5976.786177 5253.711897 3897.534784 4468.583973 1200.715357 1.808623931 3.744156729 2.503488372 4.846558635 4.630483609 4.977687794 4.375484885 3.246010606 3.721601416 1 10.22967847 -7.097112454 0.8758015 1.20381957 4.440529565 0.337178307 1.039937037 0.156719211 0.239808949 0.147224248 0.192459848 8.00E-08 7.097112454 3.236709996 KEEIIK(ac)TLSK ddPTM_HeLa_CUDC101_4h_R1 1 KEEIIKTLSK 10 2 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 1 K(0.002)EEIIK(0.998)TLSK 83.226 0.015861 0 691.01 490.55 432.82 417.09 401.4 773.57 474.53 523.36 537.76 411.3 FALSE TRUE FALSE 610.0108553 505.6632641 456.2195584 434.100733 371.7895217 758.8154411 492.8327811 582.9371869 515.5933052 408.8535693 1.492003253 1.236783294 1.115850741 1.061751115 0.909346401 1.85595895 1.205401684 1.425784757 1.261070818 1 8.675440425 -9.5988152 1.406183461 1.000577938 1.306450972 0.014641261 0.260844402 0.620029603 2.206513719 0.177074738 0.041301491 2.52E-10 9.5988152 0.305873034 ELIS(ph)NASDALDK ddPTM_HeLa_CUDC101_4h_R1 1 ELISNASDALDK 12 0 P08238;F8W026;P14625;Q96GW1;A0A1W2PRR1 P08238;P14625 HSP90AB1;HSP90B1 Heat shock protein HSP 90-beta;Endoplasmin 1 0 ELIS(0.94)NAS(0.06)DALDK 135.72 0.0013835 9691200 2221.2 1591.4 1383 1522.7 1492 1446.9 1523.5 1254.8 1357.9 1945.5 TRUE FALSE FALSE 1960.834303 1640.429148 1457.769163 1584.802288 1381.938132 1419.302793 1582.261905 1397.64136 1301.926787 1933.928079 1.013912732 0.848236894 0.753786647 0.819473229 0.714575763 0.733896368 0.818159642 0.722695624 0.673203311 1 10.91731843 -7.096450453 2.75589473 1.007255787 0.762592397 0.002576543 0.111073193 0.049374963 0.727705461 0.005627142 0.007069684 8.01E-08 7.096450453 -0.24466339 S(ph)PSGSAFGSQENLR ddPTM_HeLa_CUDC101_4h_R1 2 SPSGSAFGSQENLR 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 S(0.995)PS(0.005)GSAFGSQENLR;S(0.992)PSGSAFGS(0.007)QENLR ; 159.18 5.44E-05 59744000 2016.62 1367.59 1401.68 1280.39 1522.75 1341.77 1083.8 1783.47 1452.55 1214.79 TRUE FALSE FALSE 1780.234861 1409.723827 1477.459061 1332.609839 1410.419766 1316.177973 1125.602529 1986.493016 1392.675274 1207.564375 1.474235989 1.167410911 1.223503352 1.103551799 1.167987227 1.089944354 0.932126313 1.64504109 1.153292779 1 10.23788439 -7.096011514 16.1560343 1.229029077 1.17321332 0 0.203336588 14.27735887 2386.665641 0.038810705 0.047533984 8.02E-08 7.096011514 -0.055815757 DSSSS(ph)LTDPQVSYVK ddPTM_HeLa_CUDC101_4h_R1 2 DSSSSLTDPQVSYVK 15 0 H7C3M7;O94887-3;O94887-2;O94887 H7C3M7;O94887-3 FARP2 "FERM, RhoGEF and pleckstrin domain-containing protein 2" 1 0 DSSS(0.015)S(0.983)LT(0.001)DPQVSYVK;DSSS(0.02)S(0.98)LTDPQVSYVK ; 210.37 1.52E-23 11312000 7059.9 5052.8 4700.7 5133 5315.3 5989.7 4949.5 4213.9 5796.6 5304.5 TRUE FALSE FALSE 6232.349224 5208.470779 4954.834061 5342.345927 4923.200909 5875.456452 5140.403873 4693.593343 5557.661695 5272.948598 1.181947654 0.987771961 0.939670465 1.01316101 0.933671326 1.114263935 0.974863262 0.890126891 1.053995045 1 12.36439422 -7.095773611 12.65148903 1.08590774 0.98169761 0.297816561 0.069778788 0.969849735 125.3823857 0.014102558 0.017273946 8.02E-08 7.095773611 -0.104210129 VQQSSESSTS(ph)SPSQHEATPGAR ddPTM_HeLa_CUDC101_4h_R1 1 VQQSSESSTSSPSQHEATPGAR 22 0 O75152;E9PBY7;E9PQ61;A0A1B0GTU1;A0A494C0C4 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 VQQSSESS(0.005)T(0.011)S(0.636)S(0.344)PS(0.003)QHEATPGAR 78.978 0.0005749 0 379.19 164.39 127.98 143.76 223.58 166.25 118.14 0 265.16 222.17 TRUE FALSE FALSE 334.741923 169.454661 134.8989859 149.6231542 207.0869488 163.0790582 122.6966994 0 254.2299926 220.848523 1.515708226 0.767289085 0.610821318 0.677492211 0.937687724 0.738420416 0.555569481 0 1.151150975 1 7.786913373 -7.09570785 5.215880992 1.242448244 0.617425739 0.551825152 0.254895694 0.139980637 5.988193697 0.049104757 0.060622253 8.02E-08 7.09570785 -0.625022505 SPGGGGGGGSGNDNNQAATKS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SPGGGGGGGSGNDNNQAATKSPR 23 1 Q9NS37;E9PIM0;J3KN20 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 1 0 SPGGGGGGGSGNDNNQAAT(0.109)KS(0.891)PR;SPGGGGGGGSGNDNNQAAT(0.256)KS(0.744)PR ; 143.04 1.51E-07 12220800 2368.08 1730.81 1656.68 1681.45 1788.26 1462.6 1665.59 1344.07 2176.52 2282.09 TRUE FALSE FALSE 2090.497252 1784.134205 1746.245132 1750.026799 1656.343623 1434.703342 1729.832364 1497.073496 2086.802924 2268.516027 0.921526331 0.78647635 0.76977421 0.771441232 0.730144113 0.632441351 0.762539186 0.659935164 0.91989781 1 11.14753314 -7.094717845 0.639934113 0.988973306 0.689401175 0.843581691 0.044186733 0.131916072 0.115223461 0.010586556 0.014239493 8.04E-08 7.094717845 -0.29957213 KEESEESDDDMGFGLFD ddPTM_HeLa_CUDC101_4h_R1 2 KEESEESDDDMGFGLFD 17 1 P05387;H0YDD8;P05386-2;P05386 P05387 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 0 0 ; ; 104.94 0.021531 158667000 13659.2 12041.3 12359.9 12455.9 15996.2 14337.3 15116.6 25231 14506.6 14972.6 FALSE FALSE TRUE 12058.08928 12412.27818 13028.11358 12963.90544 14816.19219 14063.83989 15699.65233 28103.19505 13908.63181 14883.54231 0.810162596 0.833959949 0.875336886 0.87102285 0.99547486 0.944925583 1.05483305 1.888206078 0.934497415 1 13.86143031 -4.199362533 2.364844717 0.90512407 2.225133545 0.959070893 0.060378458 0.131302685 0.754638423 0.011479444 0.376178349 6.32E-05 4.199362533 1.320009475 KEETQPPVALK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 KEETQPPVALKK 12 2 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 1 KEETQPPVALK(1)K 127.52 0.0013573 1842700 2600 1155.4 1780.5 1437.3 2782.7 2160.5 2766.7 2270 2241 2057.1 FALSE TRUE FALSE 2295.231941 1190.996505 1876.759216 1495.919307 2577.425765 2119.292062 2873.412546 2528.407624 2148.625031 2044.864278 1.122437301 0.582433034 0.91779158 0.731549435 1.26043855 1.03639742 1.405184969 1.236467208 1.050742123 1 10.99778938 -5.089388252 1.639124165 0.993108181 1.31326453 0.349921134 0.188778702 0.411283978 2.040533292 0.029247787 0.124744645 8.14E-06 5.089388252 0.320156349 LNEQAS(ph)EEILK ddPTM_HeLa_CUDC101_4h_R1 1 LNEQASEEILK 11 0 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105-2 Q01105;Q01105-2 SET Protein SET 1 0 LNEQAS(1)EEILK 101.43 0.012428 15364000 4199.8 2597.5 2423.6 2590.1 2171.2 2466.6 2172.2 2097 3465.3 3316.9 TRUE FALSE FALSE 3707.50581 2677.525896 2554.627147 2695.735473 2011.034902 2419.553715 2255.982482 2335.714004 3322.458867 3297.170931 1.124450593 0.812067664 0.774793664 0.817590452 0.609927402 0.733827201 0.68421763 0.708399429 1.007669586 1 11.68701297 -7.094406845 3.335790985 1.05858508 0.721889599 0.843288826 0.061879325 0.069986671 1.479921508 0.011913395 0.01491438 8.05E-08 7.094406845 -0.336695481 QGGT(ph)WRLLGS(ph)VVFIHR ddPTM_HeLa_CUDC101_4h_R1 1 QGGTWRLLGSVVFIHR 16 1 E9PPZ0;P51787-2;P51787 E9PPZ0 KCNQ1 Potassium voltage-gated channel subfamily KQT member 1 2 0 QGGT(1)WRLLGS(1)VVFIHR 56.599 0.035965 17287000 1518.3 3165.7 2305.6 3220.5 4366.8 4661.5 4139.3 2025.6 3776.8 664.58 TRUE FALSE FALSE 1340.327176 3263.231465 2430.24771 3351.84591 4044.669864 4572.589654 4298.954188 2256.186116 3621.118705 660.6270486 2.028871174 4.939597117 3.678698466 5.073733988 6.122470874 6.921590122 6.507384456 3.415219103 5.48133582 1 9.36769223 -7.09423995 0.820801536 1.218234021 5.835720765 0.153627627 1.701759614 0.181335758 0.246160899 0.237888572 0.313220574 8.05E-08 7.09423995 4.617486744 IQQALTSPLPMT(ph)PILEGSHR ddPTM_HeLa_CUDC101_4h_R1 2 IQQALTSPLPMTPILEGSHR 20 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 IQQALTSPLPMT(1)PILEGSHR;IQQALTSPLPMT(1)PILEGSHR ; 131.26 2.44E-05 36982000 2709.4 2134.8 1734.5 1944.03 2089.94 1487.72 1819.81 1975.72 2222.99 2581.8 TRUE FALSE FALSE 2391.808239 2200.570658 1828.272317 2023.315946 1935.76929 1459.34422 1890.000681 2200.627979 2131.357411 2566.443339 0.93195443 0.857439798 0.712375874 0.788373511 0.754261456 0.568625147 0.736427979 0.857462133 0.830471251 1 11.32555469 -7.093654365 1.183694169 0.97758343 0.724756896 0.457875289 0.084683981 0.173967928 0.473110039 0.014242394 0.018272555 8.06E-08 7.093654365 -0.252826534 KEIETLK(ac)QAAAQK ddPTM_HeLa_CUDC101_4h_R1 1 KEIETLKQAAAQK 13 2 J3KP58;P30622-2;P30622-1;P30622;F5H0N7;A0A3B3ITA2 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 0 1 K(0.001)EIETLK(0.999)QAAAQK 103.88 0.014532 16110000 945.49 3956.8 8055.3 8503.6 2648.9 5294.7 2423.3 2369.2 1111.4 551.99 FALSE TRUE FALSE 834.6610955 4078.704318 8490.793884 8850.413564 2453.495924 5193.712419 2516.767493 2638.900151 1065.587622 548.7067389 1.521142418 7.433304584 15.47419283 16.12958788 4.471415695 9.465370207 4.586726049 4.809308806 1.941998423 1 9.099891484 -7.210715937 4.153637297 1.224334408 9.216374473 0.435741852 3.896270558 0.151756506 5.564245907 0.695053015 0.844055924 6.16E-08 7.210715937 7.992040065 GSDALS(ph)ETSSVSHIEDLEK ddPTM_HeLa_CUDC101_4h_R1 3 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 GS(0.005)DALS(0.576)ET(0.23)S(0.074)S(0.115)VSHIEDLEK;GS(0.012)DALS(0.52)ET(0.429)S(0.026)S(0.012)VSHIEDLEK;GS(0.002)DALS(0.971)ET(0.026)S(0.001)SVSHIEDLEK ;; 125.35 3.12E-05 68475000 19384.2 11423 8064 7426.2 15826.4 11576.6 8991.6 6652.9 16192.1 14570 TRUE FALSE FALSE 17112.01346 11774.92909 8499.964232 7729.072535 14658.918 11355.79564 9338.409024 7410.239244 15524.65478 14483.33699 1.181496603 0.812998351 0.586878855 0.533652744 1.012122967 0.78405934 0.64476916 0.511638944 1.071897643 1 13.82210642 -7.093600744 4.466421925 1.084794089 0.690865972 0.620705776 0.141321527 0.117007424 4.029867379 0.025622394 0.031784167 8.06E-08 7.093600744 -0.393928117 DELADEIANSS(ph)GKGALALEEK ddPTM_HeLa_CUDC101_4h_R1 1 DELADEIANSSGKGALALEEK 21 1 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 DELADEIANS(0.218)S(0.782)GKGALALEEK 74.047 0.0019843 15265000 2844.4 1913.4 1752.7 1775.4 1766.7 2017.7 1847.1 1399.8 2090.7 2277.1 TRUE FALSE FALSE 2510.983744 1972.349586 1847.456264 1847.808486 1636.374061 1979.215734 1918.343266 1559.147574 2004.520461 2263.555708 1.109309453 0.871350141 0.816174418 0.816330024 0.72292193 0.874383488 0.847491077 0.688804596 0.885562681 1 11.1443751 -7.093512335 3.788644614 1.05129372 0.800154916 0.548823484 0.07796381 0.080680653 2.133576777 0.010757 0.013417584 8.06E-08 7.093512335 -0.251138804 PSSTTPTPLVSETGGNS(ph)PSDKVDNELK ddPTM_HeLa_CUDC101_4h_R1 2 PSSTTPTPLVSETGGNSPSDKVDNELK 27 1 A0A3B3IRW6;Q2KHR3;Q2KHR3-2;H0YCQ7 A0A3B3IRW6 QSER1 Glutamine and serine-rich protein 1 1 0 PSSTTPTPLVS(0.001)ET(0.025)GGNS(0.731)PS(0.243)DKVDNELK;PSSTTPT(0.001)PLVS(0.014)ET(0.009)GGNS(0.95)PS(0.026)DKVDNELK ; 102.92 4.12E-07 57256000 9021.2 6875.9 6239.6 6599.1 5240.5 6029.9 5536.7 5290.2 7111.3 9186.6 TRUE FALSE FALSE 7963.748611 7087.738329 6576.93165 6868.239822 4853.918756 5914.889704 5750.252374 5892.414984 6818.169204 9131.957695 0.872074628 0.776146645 0.720210482 0.752110342 0.531531016 0.647713218 0.629684517 0.645252111 0.746627331 1 13.15670846 -7.092912361 0.550721707 0.982769776 0.605721379 0.525579172 0.086971326 0.156017612 0.106131198 0.015489104 0.021078577 8.07E-08 7.092912361 -0.377048397 ENQEPLRS(ph)PEVGDEEALRPLTK ddPTM_HeLa_CUDC101_4h_R1 2 ENQEPLRSPEVGDEEALRPLTK 22 2 P48681 P48681 NES Nestin 1 0 ENQEPLRS(0.997)PEVGDEEALRPLT(0.003)K;ENQEPLRS(1)PEVGDEEALRPLTK ; 58.339 0.0068096 390410000 9489.4 7416 7031.5 7462.5 7955.6 7612.8 7668.9 6447.8 8128.9 7815.2 TRUE FALSE FALSE 8377.066917 7644.47817 7411.644159 7766.853006 7368.731238 7467.598524 7964.692042 7181.791489 7793.823301 7768.714843 1.078307942 0.984008079 0.954037355 0.999760342 0.948513543 0.96123988 1.025226463 0.924450393 1.003231996 1 12.92346024 -7.091708993 6.999383785 1.036893319 0.971354324 0.370079038 0.033238559 0.189731369 12.53369333 0.006129698 0.007528798 8.10E-08 7.091708993 -0.065538995 APLNVQFNS(ph)PLPGDAVK ddPTM_HeLa_CUDC101_4h_R1 1 APLNVQFNSPLPGDAVK 17 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 1 0 APLNVQFNS(1)PLPGDAVK 78.228 0.01496 10660000 1188 1225.5 1410.8 1442.7 2045.7 1622.5 1426.7 756.18 1270.8 942.1 TRUE FALSE FALSE 1048.744441 1263.256202 1487.072115 1501.539542 1894.792787 1591.553516 1481.728297 842.2604746 1218.417086 936.4963473 1.119859617 1.348917383 1.587910214 1.603358674 2.023278352 1.69947648 1.582204032 0.899374009 1.301037735 1 9.871129557 -7.091611944 1.791366708 1.04743524 1.599262856 0.310394107 0.273762978 0.224327267 1.392120021 0.047649969 0.060334507 8.10E-08 7.091611944 0.551827616 ISLSKS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 2 ISLSKSPTK 9 1 A0A0A0MRN4;Q5BKZ1-3;Q5BKZ1 A0A0A0MRN4 ZNF326 DBIRD complex subunit ZNF326 1 0 ISLS(0.243)KS(0.546)PT(0.211)K;ISLS(0.042)KS(0.884)PT(0.074)K ; 145.23 0.0060946 259850000 7130.8 5129.6 4083.1 5267.8 5020.2 4873.3 4900.4 4598.3 4513.3 5851.6 TRUE FALSE FALSE 6294.938434 5287.636896 4303.844737 5482.643653 4649.869848 4780.349922 5089.41007 5121.751885 4327.259864 5816.794423 1.082200603 0.909029357 0.73989975 0.942554138 0.799387001 0.821818613 0.874950995 0.880511071 0.743925184 1 12.5060086 -7.09049925 4.739451757 1.038230188 0.844556843 0 0.107572691 0.084490572 3.228932923 0.00920264 0.011399764 8.12E-08 7.09049925 -0.193673345 KEMQPTHPIR ddPTM_HeLa_CUDC101_4h_R1 2 KEMQPTHPIR 10 1 P27348;P31946-2;P31946;P63104;E7EX29;B7Z2E6;H0YB80;B0AZS6;P63104-2 P27348;P31946-2;P63104 YWHAQ;YWHAB;YWHAZ "14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta" 0 0 ; ; 87.568 0.013082 24439900 11147.2 9293.3 11074.1 10116.8 10927.2 9745.6 9432 9246.9 10465.5 9228.2 FALSE FALSE TRUE 9840.542114 9579.615558 11672.79934 10529.40683 10121.12223 9559.718917 9795.7954 10299.52972 10034.10766 9173.310256 1.072736214 1.044292114 1.27247406 1.147830667 1.103322786 1.042123143 1.06785829 1.122771326 1.093837162 1 13.16322672 -8.048772457 0.893349727 1.013133305 1.114544521 0.102962876 0.067455223 0.468688439 0.802042964 0.020317034 0.015095706 8.94E-09 8.048772457 0.101411216 AES(ph)PESSAIES(ph)TQSTPQKGR ddPTM_HeLa_CUDC101_4h_R1 1 AESPESSAIESTQSTPQKGR 20 1 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 0 AES(0.967)PES(0.015)S(0.018)AIES(0.365)T(0.302)QS(0.206)T(0.127)PQKGR 78.736 0.0049543 27041000 4089.8 4232.9 4272.1 4008 5576.3 4693.5 4507.3 3651 3692.2 4093.8 TRUE FALSE FALSE 3610.399844 4363.310632 4503.062648 4171.463564 5164.947459 4603.979307 4681.148071 4066.615082 3540.005953 4069.449896 0.887196043 1.072211415 1.106553162 1.025068172 1.269200406 1.131351761 1.150314709 0.999303392 0.869897909 1 11.99061807 -7.090459878 4.469031724 0.947014933 1.117446138 0.552903735 0.077125211 0.137134139 4.784757513 0.013024202 0.016164801 8.12E-08 7.090459878 0.170431205 KEPAVLELEGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 KEPAVLELEGKK 12 2 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 0 1 ; KEPAVLELEGK(1)K;KEPAVLELEGK(1)K 137.62 0.00049327 5931000 8586.6 4477.6 3850.3 3780.2 8411.4 6867.2 8237.8 7634.5 7892.4 6398 FALSE TRUE FALSE 7580.091764 4615.549549 4058.458865 3934.372895 7790.90778 6736.219602 8555.534705 8503.58062 7567.071931 6359.944411 1.191848745 0.725721681 0.63812804 0.618617497 1.224996207 1.059163283 1.345221617 1.337052664 1.189801583 1 12.63479844 -4.872634495 1.817240792 1.000317463 1.365217714 0.318989138 0.218405383 0.456842428 2.778277984 0.035903188 0.189256752 1.34E-05 4.872634495 0.364900251 TEDGDWEWS(ph)DDEMDEK ddPTM_HeLa_CUDC101_4h_R1 2 TEDGDWEWSDDEMDEK 16 0 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 0 TEDGDWEWS(1)DDEMDEK;TEDGDWEWS(1)DDEMDEK ; 149.42 0.00012265 10706800 8948.3 6419 5632.5 5523.6 5680.8 6693.4 6025.3 4910.7 6952.2 7936.7 TRUE FALSE FALSE 7899.393839 6616.761782 5937.009987 5748.876283 5261.738702 6565.734547 6257.697839 5469.714238 6665.627373 7889.492155 1.001255047 0.838680317 0.752521185 0.728675074 0.666929962 0.832212571 0.79316865 0.693291042 0.844874073 1 12.94571672 -7.090152122 2.483882839 1.001758417 0.746223058 0.630747686 0.066353498 0.067397227 0.81033731 0.007657913 0.009656801 8.13E-08 7.090152122 -0.255535359 VPTTPAS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 VPTTPASPVK 10 0 Q6IE81-2;Q6IE81 Q6IE81-2 JADE1 Protein Jade-1 1 0 VPTT(0.018)PAS(0.981)PVK;VPT(0.072)T(0.417)PAS(0.511)PVK ; 122.18 0.0043079 38526000 7631.2 5541 4060.4 5131 4834.8 4866.3 4607.6 4686.5 5322.4 6962.5 TRUE FALSE FALSE 6736.682304 5711.711642 4279.917506 5340.264358 4478.146436 4773.483435 4785.316675 5219.992217 5103.008419 6921.08674 0.973356144 0.825262254 0.618388075 0.771593329 0.647029376 0.689701432 0.691411169 0.754215691 0.737313172 1 12.75678287 -7.090059295 2.854059672 0.988325682 0.696303353 0.448030101 0.09079555 0.049891573 0.789207118 0.006892167 0.008671503 8.13E-08 7.090059295 -0.292022329 STS(ph)PVTDPSIPIR ddPTM_HeLa_CUDC101_4h_R1 1 STSPVTDPSIPIR 13 0 A0A087WU18;Q99607 A0A087WU18 ELF4 ETS-related transcription factor Elf-4 1 0 S(0.002)T(0.044)S(0.761)PVT(0.193)DPSIPIR 117.27 0.0026821 84615000 5832.1 4605.2 4173.2 4076.2 4478 4525.3 3722.9 3880 5118.6 5545.2 TRUE FALSE FALSE 5148.470079 4747.080753 4398.815815 4242.445055 4147.666861 4438.987442 3866.4935 4321.683516 4907.609141 5512.216904 0.934010793 0.861192663 0.798012105 0.76964407 0.752449864 0.805299849 0.701440739 0.784019133 0.890314954 1 12.42841694 -7.088746398 0.85619865 0.982979421 0.753057965 0.78938466 0.039547739 0.091024104 0.133531268 0.006012458 0.007913352 8.15E-08 7.088746398 -0.229921457 SSSPAPEFLAS(ph)SPPDNK ddPTM_HeLa_CUDC101_4h_R1 2 SSSPAPEFLASSPPDNK 17 0 C9JME2;Q9Y4F1;Q9Y4F1-2;M0QXT1 C9JME2 FARP1 "FERM, RhoGEF and pleckstrin domain-containing protein 1" 1 0 SSSPAPEFLAS(0.942)S(0.058)PPDNK;SSSPAPEFLAS(0.987)S(0.013)PPDNK ; 145.86 0.00015886 15189900 6285.8 4809.2 3569 5084.7 4906.8 5513.4 4689.1 2997.3 4063.1 5447.2 TRUE FALSE FALSE 5548.988053 4957.365752 3761.950936 5292.076044 4544.83514 5408.241081 4869.960158 3338.500516 3895.617298 5414.799812 1.024781755 0.915521519 0.694753466 0.977335493 0.839335764 0.99878874 0.899379539 0.616551051 0.71943884 1 12.40269229 -7.085505439 4.693685696 1.011016396 0.8508176 0 0.143345814 0.192824004 7.440397303 0.017433754 0.021620705 8.21E-08 7.085505439 -0.160198796 HEAPS(ph)SPISGQPCGDDQNAS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 HEAPSSPISGQPCGDDQNASPSK 23 0 A0A088AWL3;O75376;O75376-2;E7EVU5;E7EW50;J3KS51;O75376-3 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 2 0 HEAPS(0.499)S(0.499)PIS(0.002)GQPCGDDQNAS(0.885)PS(0.115)K 112.06 2.18E-05 28699000 4274.1 2950.4 2636.1 2293.6 3015.3 2999.3 2715.1 2816.7 3314.3 3428.8 TRUE FALSE FALSE 3773.096477 3041.298327 2778.61554 2387.142922 2792.867326 2942.09335 2819.822316 3137.341743 3177.683151 3408.405345 1.106997582 0.892293615 0.815224499 0.700369434 0.819405864 0.863187635 0.827314251 0.920472017 0.932307877 1 11.7348812 -7.084710777 4.035192737 1.050124977 0.821927188 0.58981411 0.068094971 0.088973729 2.675228744 0.011058536 0.013791408 8.23E-08 7.084710777 -0.228197789 NRPTS(ph)ISWDGLDSGK ddPTM_HeLa_CUDC101_4h_R1 1 NRPTSISWDGLDSGK 15 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 1 0 NRPT(0.071)S(0.83)IS(0.099)WDGLDSGK 83.251 0.0095257 54786000 8589.3 7145.1 6489.9 6375.9 7476.6 7238.1 7021.7 6843.9 6532 7775.6 TRUE FALSE FALSE 7582.475275 7365.232062 6840.763625 6635.936761 6925.066113 7100.045302 7292.529321 7622.981912 6262.748195 7729.350385 0.980997742 0.952891471 0.88503733 0.858537449 0.895944131 0.91858241 0.94348541 0.986238368 0.81025544 1 12.91613145 -7.084638242 2.866625889 0.99130283 0.912915532 0 0.065956979 0.163189125 2.610485411 0.006063839 0.007642006 8.23E-08 7.084638242 -0.078387298 KESYSIYVYK ddPTM_HeLa_CUDC101_4h_R1 3 KESYSIYVYK 10 1 Q16778;Q8N257;Q6DRA6;Q6DN03 Q16778;Q8N257;Q6DRA6 HIST2H2BE;HIST3H2BB;HIST2H2BD;HIST2H2BC Histone H2B type 2-E;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C 0 0 ;; ;; 137.01 0.00057185 26939800 16146.8 11991 11210.4 12727.1 13306 12706.6 12397.3 11458.9 11794.2 8637.5 FALSE FALSE TRUE 14254.09658 12360.4285 11816.46813 13246.16615 12324.44289 12464.24278 12875.46801 12763.33486 11308.03808 8586.123766 1.660131739 1.439581915 1.376228489 1.542741115 1.43539078 1.451672852 1.499567018 1.486507207 1.317013171 1 13.06779125 -9.42346926 1.094018279 0.993576712 1.496321795 0.487396456 0.118517497 0.161449138 0.338522617 0.063365105 0.015150099 3.77E-10 9.42346926 0.502745083 KESYSVYVYK ddPTM_HeLa_CUDC101_4h_R1 2 KESYSVYVYK 10 1 O60814;P57053;P58876;P62807;Q5QNW6;Q5QNW6-2;Q93079;U3KQK0;Q99877;Q99879;Q99880 O60814;P58876;P62807;Q5QNW6;Q93079;U3KQK0;Q99879;Q99880 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BF;HIST1H2BH;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-F;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 0 0 ; ; 142.1 0.00029789 13532500 17446.4 13659.7 14477 15010.1 14695.3 15276.6 13973.3 14058.3 14395.3 9132.6 FALSE FALSE TRUE 15401.35944 14080.53917 15259.67041 15622.27676 13611.257 14985.22431 14512.25486 15658.64005 13801.91964 9078.278889 1.696506532 1.551014167 1.680899056 1.720841246 1.49932131 1.650667984 1.598568962 1.724846773 1.52032338 1 13.14820309 -9.266522786 0.733156021 0.944408108 1.643893163 0.270382049 0.173957729 0.16754571 0.141581877 0.072354524 0.01465656 5.41E-10 9.266522786 0.699485056 EPTPSIAS(ph)DISLPIATQELR ddPTM_HeLa_CUDC101_4h_R1 2 EPTPSIASDISLPIATQELR 20 0 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 0 EPT(0.001)PS(0.11)IAS(0.702)DIS(0.186)LPIAT(0.001)QELR;EPTPS(0.015)IAS(0.779)DIS(0.206)LPIATQELR ; 237.39 1.81E-44 16899300 1482.52 977.33 710.48 813.8 1058.66 1291.1 909.88 761.09 889.53 1090.09 TRUE FALSE FALSE 1308.741253 1007.440379 748.8906979 846.9902815 980.5647609 1266.474419 944.9743764 847.7294092 852.8631969 1083.606096 1.207764757 0.929710881 0.691109713 0.781640381 0.904908863 1.168759038 0.87206447 0.782322481 0.787060169 1 10.0816247 -7.084475743 6.514515114 1.097452494 0.873242526 0.019143748 0.160097403 0.205864943 13.27108289 0.024118586 0.029665267 8.23E-08 7.084475743 -0.224209968 S(ph)PSDSSTASTPVAEQIER ddPTM_HeLa_CUDC101_4h_R1 1 SPSDSSTASTPVAEQIER 18 0 Q16643-3;Q16643;Q16643-2;D6R9Q9 Q16643-3 DBN1 Drebrin 1 0 S(1)PSDSSTASTPVAEQIER 213.36 3.00E-24 237020000 1333.6 837.86 782.84 734.62 606.76 913.83 928.42 689.89 1296 949.36 TRUE FALSE FALSE 1177.27743 863.6734735 825.1626984 764.5809789 562.0005236 896.4002153 964.2294704 768.424289 1242.578331 943.7131645 1.247494974 0.915186421 0.874378709 0.810183653 0.595520487 0.949865117 1.021739981 0.814256193 1.316690683 1 9.882204618 -7.083197332 5.246933872 1.116535305 0.847700004 0.554316996 0.133680429 0.153053028 7.164815574 0.023377428 0.028900186 8.26E-08 7.083197332 -0.268835302 S(ph)PSPAHLPDDPK ddPTM_HeLa_CUDC101_4h_R1 3 SPSPAHLPDDPK 12 0 Q92615;H0Y4V9;A0A087X183;H0Y641 Q92615 LARP4B La-related protein 4B 1 0 S(0.789)PS(0.211)PAHLPDDPK;S(0.5)PS(0.5)PAHLPDDPK;S(0.5)PS(0.5)PAHLPDDPK ;; 148.13 0.00077611 649392100 16464.1 13236.9 12728 11849.7 14727.9 13373.3 13405.6 11741.2 13832.5 14449.8 TRUE FALSE FALSE 14534.20316 13644.7132 13416.11418 12332.98198 13641.45216 13118.22658 13922.65848 13077.77075 13262.3185 14363.85195 1.011859716 0.94993413 0.934019247 0.858612441 0.949707099 0.913280548 0.96928446 0.910464045 0.923312113 1 13.81015507 -7.082887422 2.793867696 1.005713181 0.922887092 0.218953942 0.037803057 0.116798662 1.778120522 0.004533482 0.005719654 8.26E-08 7.082887422 -0.082826089 VPVLIS(ph)PTLK ddPTM_HeLa_CUDC101_4h_R1 1 VPVLISPTLK 10 0 P42684-2;P42684-6;P42684-3;P42684;P42684-4;P42684-7;P42684-10;P42684-5 P42684-2 ABL2 Abelson tyrosine-protein kinase 2 1 0 VPVLIS(0.71)PT(0.29)LK 116.74 0.0058482 35564000 3801.6 3041.4 2464.4 2888.7 2942.9 2578.4 2761.3 2456.3 2875.9 3556.3 TRUE FALSE FALSE 3355.982211 3135.101929 2597.632918 3006.513672 2725.80813 2529.221316 2867.804266 2735.915263 2757.354185 3535.146969 0.949319007 0.886837791 0.734801959 0.850463559 0.771059352 0.715450118 0.81122632 0.773918393 0.7799829 1 11.78755448 -7.082870591 1.798792725 0.979660669 0.776641462 0.302407137 0.073940057 0.088880162 0.557234101 0.006948675 0.00882786 8.26E-08 7.082870591 -0.203019207 HGS(ph)YEDAVHSGALND ddPTM_HeLa_CUDC101_4h_R1 2 HGSYEDAVHSGALND 15 0 P17987;F5H282;E7EQR6 P17987 TCP1 T-complex protein 1 subunit alpha 1 0 HGS(1)YEDAVHSGALND;HGS(0.999)Y(0.001)EDAVHSGALND ; 122.16 0.00056366 51780000 6489.6 4799.2 4543.9 4813 4937.3 4835.8 4451.1 4408.9 5397.5 5193.8 TRUE FALSE FALSE 5728.898926 4947.057664 4789.556979 5009.294944 4573.085215 4743.565172 4622.780418 4910.791355 5175.012765 5162.907047 1.109626587 0.958192278 0.927686076 0.970246975 0.885757805 0.918777954 0.895383236 0.951167881 1.002344749 1 12.33396791 -7.081870343 5.153779983 1.051579532 0.924763037 0.642127676 0.037051941 0.105497148 4.844064645 0.00762204 0.009429617 8.28E-08 7.081870343 -0.126816495 NENTEGS(ph)PQEDGVELEGLK ddPTM_HeLa_CUDC101_4h_R1 2 NENTEGSPQEDGVELEGLK 19 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 NENTEGS(1)PQEDGVELEGLK;NENT(0.151)EGS(0.849)PQEDGVELEGLK ; 291.28 8.45E-105 26447200 7472.81 5279.08 4621.26 5153.37 5104.97 5282.57 5072.29 3944.53 4703.76 6109.7 TRUE FALSE FALSE 6596.85854 5441.722198 4871.099294 5363.546703 4728.386534 5181.813779 5267.929924 4393.559351 4509.869022 6073.359233 1.086196006 0.895998736 0.802043664 0.883126866 0.778545505 0.853203899 0.867383226 0.72341503 0.742565827 1 12.56827899 -7.080218507 3.904097946 1.040331104 0.823964372 0.028664988 0.105703957 0.073365243 2.107458837 0.008572056 0.010715447 8.31E-08 7.080218507 -0.216366732 KDSEGYS(ph)ESPDLEFEYADTDK ddPTM_HeLa_CUDC101_4h_R1 1 KDSEGYSESPDLEFEYADTDK 21 1 Q5VSL9;Q5VSL9-4 Q5VSL9 STRIP1 Striatin-interacting protein 1 1 0 KDS(0.335)EGY(0.012)S(0.475)ES(0.178)PDLEFEYADTDK 70.295 0.0025195 10688000 2092.1 1545.6 1399.3 1653.9 1405.5 1588 1494 1170.8 1560.2 1747.7 TRUE FALSE FALSE 1846.867209 1593.218104 1474.950391 1721.353191 1301.819065 1557.711546 1551.62408 1304.079139 1495.887896 1737.304603 1.063064708 0.917063192 0.848987787 0.990818299 0.749332652 0.896625464 0.893121493 0.75063356 0.861039505 1 10.76263501 -7.078701918 3.703910225 1.029546915 0.860674469 0.208202965 0.086379117 0.123507744 3.234175449 0.01104912 0.013844723 8.34E-08 7.078701918 -0.168872446 ERTY(ph)ST(ph)VKT(ph)KS(ph)TS(ph)ASINNLK ddPTM_HeLa_CUDC101_4h_R1 1 ERTYSTVKTKSTSASINNLK 20 3 Q15375-2;Q15375-4;Q15375 Q15375-2 EPHA7 Ephrin type-A receptor 7 5 0 ERT(0.492)Y(0.52)S(0.53)T(0.573)VKT(0.901)KS(0.955)T(0.11)S(0.489)AS(0.43)INNLK 48.389 0.020995 2976700 525.29 398.99 377.06 379.74 393.26 471.01 367.78 363.12 415.66 424.44 TRUE FALSE FALSE 463.7163025 411.282409 397.4450041 395.2274386 364.2499933 462.026269 381.9653978 404.456113 398.5263189 421.915412 1.099074102 0.974798259 0.942001626 0.936745678 0.863324692 1.09506848 0.90531274 0.958618959 0.944564497 1 8.720809978 -7.078671216 6.019806573 1.046656635 0.950735257 0.100708896 0.067999503 0.198644013 12.06362721 0.010498338 0.012939553 8.34E-08 7.078671216 -0.095921378 NDAPTPGTST(ph)TPGLR ddPTM_HeLa_CUDC101_4h_R1 1 NDAPTPGTSTTPGLR 15 0 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 NDAPT(0.001)PGT(0.018)S(0.077)T(0.573)T(0.33)PGLR 106.6 0.015442 103690000 7601.1 5735 5653.3 5415.7 6072.3 5186.8 5104.3 5374.9 6751 7089.3 TRUE FALSE FALSE 6710.110581 5911.688552 5958.934498 5636.575655 5624.358527 5087.870432 5301.174561 5986.75689 6472.720923 7047.132528 0.952176017 0.838878583 0.845582863 0.799839599 0.798105968 0.721977402 0.752245618 0.849530907 0.918490024 1 12.78282063 -7.078480654 0.858929213 0.989093195 0.774006354 0.757144602 0.040898336 0.124619002 0.183852677 0.007680581 0.010167253 8.35E-08 7.078480654 -0.215086841 KEVVEEAENGR ddPTM_HeLa_CUDC101_4h_R1 2 KEVVEEAENGR 11 1 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 0 ; ; 134.38 0.001793 39420000 6715.9 5249 5668.5 5985.8 5400.9 5524.1 5182.2 5348.5 5882.8 5677.9 FALSE FALSE TRUE 5928.672383 5410.715468 5974.956256 6229.926797 5002.486367 5418.736996 5382.07919 5957.351621 5640.308494 5644.127598 1.050414308 0.958645136 1.058614667 1.103789149 0.886317022 0.960066352 0.953571495 1.05549556 0.999323349 1 12.46253489 -5.761211665 24.99999985 1.0268305 0.962856381 0.262052967 0.053055755 6.540518285 717885.7768 0.007609276 0.014491997 1.73E-06 5.761211665 -0.063974119 KEWSGLLEELAR ddPTM_HeLa_CUDC101_4h_R1 1 KEWSGLLEELAR 12 1 Q01813-2;Q01813;V9GYV7;Q5VSR5 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 0 0 105.66 0.0072387 8314100 6408.1 5677.5 4878.7 4920.3 5911.4 5930.4 5643.2 5118.7 5244 5081.1 FALSE FALSE TRUE 5656.952232 5852.417046 5142.457279 5120.971101 5475.327799 5817.287501 5860.860114 5701.392118 5027.8401 5050.877391 1.119993972 1.158693152 1.018131481 1.013877532 1.084034985 1.151738015 1.160364757 1.128792421 0.995438953 1 12.30231831 -13.52287875 0.251609208 0.319758739 1.116802065 0.425226788 0.049972686 40.45069685 0.535429293 13.67777101 0.033088301 3.00E-14 13.52287875 0.797043326 KEYEQELSDDLHVER ddPTM_HeLa_CUDC101_4h_R1 2 KEYEQELSDDLHVER 15 1 X6R631;Q7Z7F7;Q7Z7F7-2 X6R631 MRPL55 "39S ribosomal protein L55, mitochondrial" 0 0 ; ; 141.55 0.00027761 11185300 15672.5 12204.7 10694.1 12293.3 16009.4 15027 13289.1 11512.2 12260.4 12309.2 FALSE FALSE TRUE 13835.39331 12580.71234 11272.25539 12794.67391 14828.41846 14740.38501 13801.66504 12822.70231 11755.02112 12235.98433 1.130713552 1.028173296 0.921238136 1.045659553 1.211869683 1.204675048 1.12795707 1.047950207 0.960692724 1 13.57884254 -5.784589452 24.52072692 1.047655568 1.15071343 0.416258471 0.071293205 181.0018612 191718.1514 0.011613358 0.021061397 1.64E-06 5.784589452 0.103057862 KFEEFQTDMAAHEER ddPTM_HeLa_CUDC101_4h_R1 3 KFEEFQTDMAAHEER 15 1 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ;; ;; 74.296 0.012717 24513800 22895.6 17375.4 17314.3 18635.5 15130.3 16894.7 15666.6 14185.6 18928.3 20834.5 FALSE FALSE TRUE 20211.81248 17910.71548 18250.36343 19395.53624 14014.16791 16572.46175 16270.86601 15800.43136 18148.06746 20710.57547 0.975917473 0.864810131 0.881209866 0.936503975 0.676667239 0.800193204 0.785630802 0.762916095 0.876270555 1 14.33808002 -6.512432194 0.661244944 0.996591638 0.756286182 0.511333575 0.066908754 0.251166048 0.220530154 0.012316858 0.025774989 3.07E-07 6.512432194 -0.240305456 AAS(ph)LNYLNQPSAAPLQVSR ddPTM_HeLa_CUDC101_4h_R1 1 AASLNYLNQPSAAPLQVSR 19 0 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 AAS(0.975)LNY(0.019)LNQPS(0.006)AAPLQVSR 140.84 5.36E-05 190880000 1932.3 1207.7 1053.7 1060.9 1174.5 959.1 987.53 1238 1354.6 1466.4 TRUE FALSE FALSE 1705.798723 1244.907806 1110.666209 1104.168088 1087.859475 940.8067655 1025.619363 1378.928916 1298.762815 1457.677788 1.170216585 0.85403497 0.761942192 0.757484334 0.746296256 0.645414764 0.703598128 0.945976489 0.890980727 1 10.50945614 -7.078264896 3.988644151 1.079847 0.754099163 0.546729635 0.101266916 0.088840013 2.66790407 0.015766773 0.019702799 8.35E-08 7.078264896 -0.325747837 VYEDSGIPLPAES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 VYEDSGIPLPAESPK 15 0 Q8IXM2-2;F8W038;F8W1H0;H0YIS7;Q8IXM2;Q8IXM2-3 Q8IXM2-2 BAP18;C17orf49;RNASEK-C17orf49 Chromatin complexes subunit BAP18 1 0 VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK;VYEDSGIPLPAES(1)PK ;; 229.02 3.43E-33 429391700 22892.4 19400.7 18707.5 18396.1 15930.8 18462 17458.7 17086.3 18100.8 22184.5 TRUE FALSE FALSE 20208.98757 19998.41257 19718.88404 19146.37247 14755.61662 18109.86811 18132.08791 19031.33533 17354.67736 22052.54561 0.916401577 0.906852793 0.894177225 0.868215979 0.669111716 0.821214405 0.822221989 0.862999477 0.786969345 1 14.42865758 -7.077376226 0.581127115 0.982446979 0.798155587 0.043941688 0.082189296 0.365085573 0.270642961 0.01764217 0.024228512 8.37E-08 7.077376226 -0.184291392 KFGYVDFESAEDLEK ddPTM_HeLa_CUDC101_4h_R1 1 KFGYVDFESAEDLEK 15 1 P19338 P19338 NCL Nucleolin 0 0 158.29 8.33E-05 69256000 3019.3 2637.8 2883 2768.9 2749.3 3093.7 2696.2 3189.4 2888.7 3030.8 FALSE FALSE TRUE 2665.382231 2719.067491 3038.863701 2881.82771 2546.489616 3034.692827 2800.193337 3552.468404 2769.626563 3012.772667 0.884694109 0.90251333 1.00866014 0.956536728 0.845231253 1.007275743 0.929440634 1.179135898 0.919294905 1 11.5568761 -4.259384919 24.73401378 0.943228076 1.179135991 0.654683346 0.052186028 83.45842938 1004682.999 0.007949628 0.069622827 5.50E-05 4.259384919 0.235907916 LTS(ph)DEEGEPSGKR ddPTM_HeLa_CUDC101_4h_R1 1 LTSDEEGEPSGKR 13 1 Q8WVC0;Q8WVC0-2 Q8WVC0 LEO1 RNA polymerase-associated protein LEO1 1 0 LT(0.15)S(0.85)DEEGEPSGKR 143.55 0.0012903 33853000 2529.8 2336.7 2494.3 2468.4 2705.5 2591.7 2347 2423.2 2934.4 2234.1 TRUE FALSE FALSE 2233.260679 2408.690957 2629.149403 2569.072021 2505.920655 2542.267641 2437.524576 2699.047293 2813.44279 2220.811474 1.005605701 1.084599474 1.183868795 1.156816799 1.128380632 1.144747166 1.097582845 1.215342826 1.266853501 1 11.11687121 -7.075727705 2.994155144 1.002437693 1.150156318 0 0.088864091 0.066643508 1.166992474 0.004761082 0.006011345 8.40E-08 7.075727705 0.147718624 KFQGIK(ac)HECQANGPEDLNR ddPTM_HeLa_CUDC101_4h_R1 1 KFQGIKHECQANGPEDLNR 19 2 P60981;P60981-2 P60981 DSTN Destrin 0 1 K(0.189)FQGIK(0.811)HECQANGPEDLNR 98.572 0.0026099 3491400 3233.7 4799.9 5437 8867.6 9434.7 9409.3 9241.6 8324.3 2197.1 697.27 FALSE TRUE FALSE 2854.650588 4947.77923 5730.940666 9229.259057 8738.720978 9229.833279 9598.051608 9271.904664 2106.534608 693.122607 4.118536258 7.138389629 8.268292807 13.31547833 12.60775639 13.31630679 13.84755238 13.37700512 3.039194778 1 9.436966764 -6.835135335 0.720074362 1.76361245 14.00897397 0.966648048 0.85714748 0.067652118 0.071519389 0.203916116 0.324914138 1.46E-07 6.835135335 12.24536152 LESLYS(ph)DEEDESAVGADK ddPTM_HeLa_CUDC101_4h_R1 1 LESLYSDEEDESAVGADK 18 0 Q9UP95-3;Q9UP95-5;Q9UP95-2;Q9UP95-6;Q9UP95;I3L4N6;Q9UP95-7 Q9UP95-3 SLC12A4 Solute carrier family 12 member 4 1 0 LES(0.004)LYS(0.996)DEEDESAVGADK 222.09 5.28E-33 7670100 3657.5 2231.7 2027 2392.3 1808.8 2418.8 1952.4 1242.5 2312.9 2671.8 TRUE FALSE FALSE 3228.773394 2300.456032 2136.585751 2489.868334 1675.368428 2372.66542 2027.704722 1383.941178 2217.561283 2655.908015 1.215694737 0.866165552 0.804465267 0.937482895 0.630808152 0.893353763 0.763469484 0.521080237 0.834954099 1 11.37498947 -7.075406325 4.143592879 1.101373075 0.770441552 0.333228519 0.14877136 0.121874295 3.962405424 0.022308452 0.02785606 8.41E-08 7.075406325 -0.330931523 ECS(ph)VEKGTGDSLR ddPTM_HeLa_CUDC101_4h_R1 1 ECSVEKGTGDSLR 13 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 ECS(0.981)VEKGT(0.019)GDSLR 69.846 0.029591 105630000 4439.5 5052.7 4994.2 5428.7 6301.3 5395.8 5198.3 6437.2 5598.5 3613.6 TRUE FALSE FALSE 3919.10854 5208.367698 5264.201559 5650.105851 5836.465653 5292.884105 5398.800172 7169.984828 5367.72746 3592.106146 1.091033611 1.44994816 1.465491649 1.572922854 1.624803225 1.473476531 1.502962316 1.996039241 1.494312039 1 11.81061427 -7.073215279 1.042218221 1.020703535 1.627823334 0.385457889 0.204094985 0.147394711 0.313538284 0.027419901 0.035819376 8.45E-08 7.073215279 0.607119799 EYPS(ph)PPPS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 1 EYPSPPPSPLR 11 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 2 0 EY(0.003)PS(0.997)PPPS(1)PLR 123.95 0.032613 13605000 6940.8 5738 5216 5768.9 6480.4 5185.5 5753.1 5502.1 5600 6119.9 TRUE FALSE FALSE 6127.209946 5914.780979 5497.992738 6004.180677 6002.353803 5086.595227 5974.998994 6128.436824 5369.16563 6083.498563 1.007185238 0.972266356 0.903755081 0.986961798 0.986661498 0.83612993 0.982164939 1.007386911 0.882578598 1 12.57068553 -7.071241216 4.629183466 1.003139343 0.94919083 0 0.060634512 0.247687374 10.09611139 0.007652882 0.009523702 8.49E-08 7.071241216 -0.053948513 LGGLRPESPES(ph)LTSVSR ddPTM_HeLa_CUDC101_4h_R1 1 LGGLRPESPESLTSVSR 17 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 LGGLRPES(0.1)PES(0.845)LT(0.027)S(0.027)VSR 110.98 0.004953 33480000 1477.9 1089 922.35 1129 1159.8 1250.5 882.48 1122 1200.1 1154.8 TRUE FALSE FALSE 1304.662802 1122.550799 972.215031 1175.0455 1074.243865 1226.648796 916.5175492 1249.723945 1150.63137 1147.931198 1.13653397 0.977890313 0.846927963 1.023620145 0.93580858 1.068573446 0.798408085 1.088674954 1.002352207 1 10.16482046 -7.070897271 8.745939186 1.064224997 0.955777475 0.139386002 0.092295444 0.413808233 48.323611 0.014902281 0.018279755 8.49E-08 7.070897271 -0.108447523 KGAAPAPPGK(ac)TGPAVAK ddPTM_HeLa_CUDC101_4h_R1 2 KGAAPAPPGKTGPAVAK 17 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 0 1 ; KGAAPAPPGK(1)TGPAVAK;KGAAPAPPGK(1)TGPAVAK 132.15 0.0058461 3928200 2120.87 2480.4 2521.9 2866.1 2813.7 2876.7 2610.9 3271.7 1458.96 1953.92 FALSE TRUE FALSE 1872.264834 2556.818184 2658.241542 2982.991946 2606.138957 2821.83174 2711.603288 3644.137103 1398.821051 1942.297997 0.963943142 1.31638821 1.368606438 1.5358055 1.34178121 1.452831514 1.396079949 1.876198765 0.720188691 1 10.92354885 -7.019716018 1.791816386 0.979435631 1.494259501 0.725918794 0.162711447 0.120921905 0.762935245 0.023713714 0.030888844 9.56E-08 7.019716018 0.51482387 GAAEEAELEDS(ph)DDEEKPVKQDDFPKDFGPR ddPTM_HeLa_CUDC101_4h_R1 2 GAAEEAELEDSDDEEKPVKQDDFPKDFGPR 30 3 Q9UBB9;F6XM96 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 GAAEEAELEDS(1)DDEEKPVKQDDFPKDFGPR;GAAEEAELEDS(1)DDEEKPVKQDDFPKDFGPR ; 72.082 1.67E-05 36868000 2799.5 3100.3 3477.9 3369 4352.8 3703.6 3625.4 3688.7 3264.2 2212.1 TRUE FALSE FALSE 2471.346854 3195.816568 3665.925794 3506.402382 4031.702616 3632.960001 3765.232892 4108.606698 3129.648294 2198.942331 1.123879794 1.453342602 1.667131394 1.594585876 1.833473557 1.652139735 1.712292696 1.868446771 1.423251647 1 11.10259405 -7.070609883 1.240684545 1.037774012 1.741458522 0.722822715 0.14329358 0.062673309 0.187268795 0.014470517 0.01871749 8.50E-08 7.070609883 0.703684511 (ac)S(ph)GDEMIFDPTMS(ph)KK ddPTM_HeLa_CUDC101_4h_R1 2 SGDEMIFDPTMSKK 14 1 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 2 0 S(1)GDEMIFDPT(0.102)MS(0.898)KK;S(1)GDEMIFDPT(0.269)MS(0.731)KK ; 59.502 0.0023722 9152700 4292.6 3176.3 2995.1 3001.7 2861.1 3356 3774.6 2201.3 2927.5 3466.6 TRUE FALSE FALSE 3789.427935 3274.158038 3157.024166 3124.1223 2650.042353 3291.989891 3920.187586 2451.887094 2806.827211 3445.980509 1.099666097 0.950138293 0.916146843 0.906598947 0.769024185 0.955312975 1.137611654 0.711520883 0.81452208 1 11.75069883 -7.069912698 4.439760855 1.046857312 0.908512345 0 0.131192721 0.22747396 8.625617851 0.017873834 0.022287943 8.51E-08 7.069912698 -0.138344966 SLS(ph)VEHLETK ddPTM_HeLa_CUDC101_4h_R1 2 SLSVEHLETK 10 0 J3KN34;P26045-2;P26045 J3KN34 PTPN3 Tyrosine-protein phosphatase non-receptor type;Tyrosine-protein phosphatase non-receptor type 3 1 0 S(0.137)LS(0.863)VEHLETK;S(0.049)LS(0.951)VEHLETK ; 86.803 0.021366 27500000 36538 29983 27605 27285 32124 31469 28154 29333 32082 32296 TRUE FALSE FALSE 32255.07103 30906.74069 29097.4098 28397.80024 29754.27652 30868.78126 29239.90921 32672.15015 30759.56638 32103.90196 1.004708745 0.962709789 0.906351192 0.88455915 0.926811842 0.961527396 0.910789886 1.017700284 0.958125477 1 14.97046103 -7.069737075 3.678176328 1.002089264 0.93212528 0.267323073 0.036904805 0.149493879 3.939562444 0.005548697 0.006972283 8.52E-08 7.069737075 -0.069963984 KGATPGK(ac)ALVATPGK ddPTM_HeLa_CUDC101_4h_R1 2 KGATPGKALVATPGK 15 2 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 ; KGATPGK(1)ALVATPGK;K(0.01)GATPGK(0.99)ALVATPGK 174.21 6.09E-07 12384800 9623.1 9185.6 10165.2 10404.8 9780.2 10535.1 11671.3 14425.9 7697.6 10062.6 FALSE TRUE FALSE 8495.094806 9468.597448 10714.76146 10829.15272 9058.734131 10334.16052 12121.46595 16068.08614 7380.30167 10002.74721 0.849276167 0.946599694 1.07118187 1.082617854 0.905624619 1.033132229 1.211813685 1.606367312 0.73782747 1 13.28810866 RTQS(ph)SLTVSEVLTR ddPTM_HeLa_CUDC101_4h_R1 3 RTQSSLTVSEVLTR 14 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 RT(0.004)QS(0.843)S(0.144)LT(0.008)VSEVLTR;RT(0.089)QS(0.741)S(0.151)LT(0.019)VSEVLTR;RT(0.025)QS(0.794)S(0.169)LT(0.011)VS(0.001)EVLTR ;; 105.02 0.0026717 32027600 3107.37 3095.69 3251.53 2964.26 4107.19 3237.41 3243.24 2554.53 3473.86 3106.52 TRUE FALSE FALSE 2743.128799 3191.06454 3427.317547 3085.155335 3804.210776 3175.661798 3368.332853 2845.327369 3330.66602 3088.042281 0.888306749 1.033361674 1.109867429 0.999065121 1.231916674 1.028373808 1.09076643 0.921401688 1.078568788 1 11.59247679 -7.069120595 6.042054551 0.947518303 1.06829317 0.067674055 0.08968677 0.198642224 13.49290263 0.013404243 0.016541144 8.53E-08 7.069120595 0.120774867 KGDECELLGHSK ddPTM_HeLa_CUDC101_4h_R1 1 KGDECELLGHSK 12 1 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 80.69 0.023049 15012000 7996.9 7165.9 6728 7036.6 7382.5 7280.9 6178.5 6415.7 6213.9 5178.9 FALSE FALSE TRUE 7059.515505 7386.672885 7091.736031 7323.582963 6837.907683 7142.028963 6416.806815 7146.037355 5957.760412 5148.095672 1.371286774 1.434835977 1.377545501 1.422580975 1.328240211 1.387314731 1.246442806 1.388093347 1.15727461 1 12.32982315 -9.090762117 0.765547318 0.988101505 1.369832067 0.728391846 0.068435291 0.184371821 0.187963723 0.042144712 0.011177824 8.11E-10 9.090762117 0.381730563 DTSS(ph)SPTTGSTVQSVDLIFTR ddPTM_HeLa_CUDC101_4h_R1 1 DTSSSPTTGSTVQSVDLIFTR 21 0 P57060 P57060 RWDD2B RWD domain-containing protein 2B 1 0 DT(0.003)S(0.092)S(0.584)S(0.316)PT(0.005)TGSTVQSVDLIFTR 308.52 1.15E-146 21268000 2354.3 2020.4 2081.4 1880.2 2510.2 2140.6 2014.4 1950.7 2609.6 2058.3 TRUE FALSE FALSE 2078.332523 2082.646129 2193.92678 1956.882683 2325.027547 2099.771621 2092.096083 2172.759803 2502.031183 2046.05714 1.015774429 1.017882682 1.072270533 0.956416439 1.136345365 1.026252679 1.022501299 1.061925281 1.22285499 1 10.99863072 -7.068806779 0.609271051 1.002816322 1.04912874 0 0.081605155 0.949601506 0.761068435 0.011547601 0.01590442 8.53E-08 7.068806779 0.046312417 SAGGRPGS(ph)GPQLGTGR ddPTM_HeLa_CUDC101_4h_R1 4 SAGGRPGSGPQLGTGR 16 1 K7EM11;O14908-2;O14908;K7ESN1 K7EM11 GIPC1 PDZ domain-containing protein GIPC1 1 0 SAGGRPGS(0.992)GPQLGT(0.008)GR;SAGGRPGS(0.999)GPQLGT(0.001)GR;S(0.003)AGGRPGS(0.963)GPQLGT(0.034)GR;SAGGRPGS(0.994)GPQLGT(0.006)GR ;;; 128.94 0.0024518 111869600 4920.82 4512.4 4855.89 4508.48 5960.64 4550.09 4430.19 3530.3 4564.29 4559.2 TRUE FALSE FALSE 4344.008939 4651.421695 5118.414102 4692.355302 5520.935462 4463.304614 4601.063912 3932.175082 4376.148034 4532.081676 0.958501909 1.026332275 1.129373755 1.03536424 1.218189754 0.984824399 1.015220872 0.867631116 0.965593374 1 12.14595815 -7.068772462 6.34580279 0.980774225 1.048215631 0.104131825 0.086301356 0.388905428 28.9110818 0.01421588 0.017522613 8.54E-08 7.068772462 0.067441407 LKTEKEPDATPPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 LKTEKEPDATPPSPR 15 2 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 LKTEKEPDATPPS(1)PR;LKTEKEPDAT(0.012)PPS(0.988)PR ; 77.027 0.021764 161036000 7579.9 7684.5 7375.7 8285.1 8885.6 8405.3 7573.1 6769.4 7711.1 7906.1 TRUE FALSE FALSE 6691.395612 7921.250337 7774.452652 8623.002189 8230.126991 8244.982907 7865.197004 7540.001133 7393.245194 7859.074166 0.851422887 1.007911386 0.989232636 1.09720331 1.0472133 1.049103588 1.000779079 0.959400684 0.940727246 1 12.94014365 -7.068193478 9.143846621 0.929748727 1.025890341 0.425292766 0.048647951 0.382214175 49.19374837 0.010790746 0.013233777 8.55E-08 7.068193478 0.096141615 GGSDGTPRGS(ph)PSPASVSSGR ddPTM_HeLa_CUDC101_4h_R1 1 GGSDGTPRGSPSPASVSSGR 20 1 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 0 GGSDGT(0.001)PRGS(0.997)PS(0.002)PASVSSGR 82.761 0.0017427 26261000 1124.5 1281 1454.9 1620.5 1492.9 1192.8 1296.3 1266.1 1499 1228.7 TRUE FALSE FALSE 992.6878146 1320.466092 1533.556295 1686.590994 1382.771741 1170.049327 1346.298725 1410.227706 1437.210586 1221.391638 0.812751442 1.081116041 1.255581132 1.380876487 1.132128057 0.957964089 1.102266205 1.154607304 1.176699218 1 10.25431016 -7.066781209 5.514171541 0.912263981 1.161016588 0.155741472 0.138054895 0.149530187 8.804581874 0.021587213 0.02672183 8.57E-08 7.066781209 0.248752607 KGDVEGSQSQDEGEGSGESER ddPTM_HeLa_CUDC101_4h_R1 1 KGDVEGSQSQDEGEGSGESER 21 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 0 0 72.968 0.0040529 3666900 580.41 560.69 479.98 508.28 494.89 509.27 526.43 470.49 483.58 632.83 FALSE FALSE TRUE 512.3752196 577.9641943 505.9291707 529.0098554 458.3829507 499.5565233 546.7345814 524.0486798 463.6466277 629.065899 0.814501661 0.918765737 0.804254644 0.840945052 0.728672388 0.79412431 0.869121315 0.833058477 0.737039837 1 9.297067347 -9.673248316 0.441446341 1.078255696 0.814801707 0 0.094959252 1.226662513 0.247837497 0.153420394 0.013660128 2.12E-10 9.673248316 -0.263453988 AAQQQQPSAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 AAQQQQPSASPR 12 0 Q86U86-8;Q86U86 Q86U86-8 PBRM1 Protein polybromo-1 1 0 AAQQQQPS(0.002)AS(0.998)PR;AAQQQQPSAS(1)PR;AAQQQQPSAS(1)PR;AAQQQQPSAS(1)PR ;;; 186.51 9.16E-11 80665840 4896.13 5142.35 5383.6 5250.87 5892.82 5484.58 5743.8 4611.901 5407.45 5149.55 TRUE FALSE FALSE 4322.213063 5300.779708 5674.6537 5465.023175 5458.118409 5379.970774 5965.34029 5136.901168 5184.552622 5118.920248 0.844360305 1.035526918 1.108564585 1.067612487 1.066263615 1.050997186 1.165351285 1.003512639 1.012821527 1 12.32162381 -7.065918129 6.181284532 0.926718863 1.078548828 0.455621744 0.05891006 0.130824427 9.625500774 0.011029745 0.013610297 8.59E-08 7.065918129 0.151829965 NT(ph)QS(ph)LIQY(ph)QNVET(ph)KEK ddPTM_HeLa_CUDC101_4h_R1 1 NTQSLIQYQNVETKEK 16 1 A0A0A0MS50;Q96RE9-4;Q96RE9;Q96RE9-2;Q96RE9-3 A0A0A0MS50 ZNF300 Zinc finger protein 300 4 0 NT(1)QS(1)LIQY(1)QNVET(1)KEK 78.401 0.0013246 0 4822.5 3632.4 3112.3 3768.9 3403.1 3425.6 3409.3 2994.9 4527.5 4142.1 TRUE FALSE FALSE 4257.21386 3744.309939 3280.560352 3922.612033 3152.060093 3360.262387 3540.797843 3335.82731 4340.874534 4117.462605 1.033941111 0.90937315 0.796743205 0.952677027 0.765534601 0.816100281 0.85994657 0.810165782 1.054259613 1 12.00753983 -7.065869776 3.508883982 1.015800458 0.836501752 0.757900605 0.049217213 0.082142077 1.987754158 0.007667097 0.009662676 8.59E-08 7.065869776 -0.179298706 KGDVVIVLTGWRPGSGFTNTMR ddPTM_HeLa_CUDC101_4h_R1 1 KGDVVIVLTGWRPGSGFTNTMR 22 2 P14618;B4DNK4;P14618-3;P14618-2;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 44.468 0.027854 375460 222.29 216.64 119.87 202.67 115.29 151.12 184.85 152.06 0 146.34 FALSE FALSE TRUE 196.2335032 223.3144216 126.3505348 210.9357586 106.7852864 148.2376378 191.9797264 169.3698958 0 145.4695632 1.348966058 1.535128152 0.86857025 1.450033629 0.734073053 1.019028548 1.319724362 1.164297823 0 1 7.184573517 -5.792259514 24.99983788 1.192630788 1.075007544 0 0.442687349 530.3931086 430228.3337 0.036376089 0.065942082 1.61E-06 5.792259514 -0.117623244 KGEDFVK(ac)TLK ddPTM_HeLa_CUDC101_4h_R1 2 KGEDFVKTLK 10 2 P40926;P40926-2;G3XAL0 P40926 MDH2 "Malate dehydrogenase, mitochondrial;Malate dehydrogenase" 0 1 ; KGEDFVK(1)TLK;KGEDFVK(1)TLK 124.6 0.003717 4477900 4549.3 4631.2 4354.2 4451.1 4525.2 4775.9 3681.4 4792 3480.3 3652.7 FALSE TRUE FALSE 4016.03795 4773.881783 4589.601223 4632.635097 4191.385011 4684.807665 3823.392831 5337.50191 3336.840561 3630.973578 1.106049897 1.314766324 1.264013941 1.275865824 1.15434192 1.290234579 1.052993846 1.469991944 0.918993347 1 11.82614072 -7.551352778 2.120500867 1.038286452 1.24988158 0.515128636 0.110804927 0.182166314 1.659003026 0.018574783 0.019792238 2.81E-08 7.551352778 0.211595127 KGEK(ac)DIPGLTDTTVPR ddPTM_HeLa_CUDC101_4h_R1 1 KGEKDIPGLTDTTVPR 16 2 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 0 1 K(0.17)GEK(0.83)DIPGLTDTTVPR 84.403 0.014122 0 946.95 1159 1081.4 1102.7 998.27 1036.4 894.05 705.92 1236.2 1250.8 FALSE TRUE FALSE 835.9499565 1194.707416 1139.863755 1147.672872 924.6296109 1016.632397 928.533808 786.2790794 1185.243313 1243.360186 0.672331289 0.960869931 0.9167607 0.923041356 0.743653867 0.817649148 0.746793905 0.632382385 0.953258216 1 10.28002857 -3.314888779 0.653072204 0.860158463 8.60E-15 0.4092255 0.09581619 10.51945502 1.261175581 0.022221891 9.012530785 0.000484296 3.314888779 -0.860158463 YFDNKDDDS(ph)DTETSNDLPK ddPTM_HeLa_CUDC101_4h_R1 2 YFDNKDDDSDTETSNDLPK 19 1 C9J3R1;C9IZP0;J3KR59;J3KR68;Q9UID6 C9J3R1 ZNF639 Zinc finger protein 639 1 0 YFDNKDDDS(0.565)DT(0.269)ET(0.071)S(0.095)NDLPK;YFDNKDDDS(0.588)DT(0.342)ET(0.05)S(0.02)NDLPK ; 77.584 0.0046773 36798000 7434.1 5683.6 5738.3 6030.5 6466.8 5473.5 5213.3 5507.5 7085.3 6926.5 TRUE FALSE FALSE 6562.686067 5858.704979 6048.529855 6276.449856 5989.757048 5369.102107 5414.378727 6134.451538 6793.240935 6885.30087 0.953144415 0.850900359 0.878469942 0.911572344 0.869933959 0.779791938 0.786367775 0.890948944 0.986629497 1 12.74930398 -7.065747085 0.469637011 1.000309042 0.81705799 0.684759045 0.040031402 0.348213919 0.183364868 0.01653277 0.023165391 8.60E-08 7.065747085 -0.183251052 SFTPDHVVY(ph)AR ddPTM_HeLa_CUDC101_4h_R1 1 SFTPDHVVYAR 11 0 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 SFTPDHVVY(1)AR 84.31 0.0016961 0 3898.4 2552.6 2518.3 2080.5 3232.7 2542.9 2200.3 1866.9 3283.5 2796.4 TRUE FALSE FALSE 3441.435462 2631.24258 2654.446915 2165.351783 2994.230161 2494.398419 2285.166308 2079.42035 3148.15274 2779.766888 1.238030238 0.94656951 0.954917093 0.778968838 1.077151532 0.897340863 0.822071202 0.748055658 1.132524009 1 11.44074819 -7.065377163 4.9159341 1.112414345 0.886586969 0.528408592 0.102604488 0.154479549 7.356077479 0.020370282 0.025327474 8.60E-08 7.065377163 -0.225827375 GFGSSAPEGLEPDSMASAASALHLLS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 GFGSSAPEGLEPDSMASAASALHLLSPR 28 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 GFGSSAPEGLEPDS(0.014)MAS(0.008)AAS(0.154)ALHLLS(0.824)PR 84.787 6.32E-06 2532900 928.22 593.88 375.3 352.04 820.42 648.99 589.53 537.43 647.59 668.32 TRUE FALSE FALSE 819.4154587 612.1767389 395.5898532 366.3977128 759.8992511 636.611597 612.2683696 598.6088588 620.8960661 664.3448029 1.233418934 0.921474415 0.595458641 0.551517392 1.143832612 0.958254801 0.921612342 0.901051466 0.934599117 1 9.375788402 -7.065305494 7.043914326 1.109165354 0.846428995 0.201737322 0.17818311 0.243658543 22.65342773 0.031446008 0.038695831 8.60E-08 7.065305494 -0.262736359 KGGPGSTLSFVGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 KGGPGSTLSFVGKR 14 2 Q9BQ61 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 0 1 KGGPGSTLSFVGK(1)R 119.65 0.008259 2994700 1300.9 1292.5 1205.4 1277 1461.7 1251.9 1217.6 1499.2 1267.3 1267 FALSE TRUE FALSE 1148.410474 1332.320393 1270.56757 1329.08158 1353.873303 1228.022093 1264.56324 1669.862868 1215.061358 1259.463828 0.911824896 1.057847287 1.008816246 1.055275706 1.074960053 0.975035619 1.004048875 1.325852185 0.964744942 1 10.29859397 -4.261070541 4.705308284 0.984488669 1.346039084 0.778452489 0.050171133 0.072436403 4.39240479 0.008543744 0.085780908 5.48E-05 4.261070541 0.361550415 SALAPNLLTS(ph)GK ddPTM_HeLa_CUDC101_4h_R1 1 SALAPNLLTSGK 12 0 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 SALAPNLLT(0.177)S(0.823)GK 102.73 0.0093558 33471000 7160.4 6385.7 5709.9 6057.5 7299.3 6678.8 6120.9 2028 6776.4 6818.6 TRUE FALSE FALSE 6321.068766 6582.435848 6018.594466 6304.551033 6760.845181 6551.413018 6356.985163 2258.859323 6497.073924 6778.042664 0.932580257 0.971141106 0.887954645 0.930143309 0.997462766 0.966564146 0.93787919 0.333261302 0.958547216 1 12.726653 -4.261190638 5.422291479 0.961059802 0.309172736 0.971686411 0.031768412 0.019373529 2.111901592 0.005137512 0.046699522 5.48E-05 4.261190638 -0.651887066 down EVS(ph)SRPST(ph)PGLSVVSGISATSEDIPNK ddPTM_HeLa_CUDC101_4h_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNK 27 1 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 EVS(0.485)S(0.486)RPS(0.429)T(0.593)PGLS(0.007)VVSGISATSEDIPNK 85.17 1.64E-05 30899000 5797.2 3348.5 3068.9 3250.4 3352.4 3934 2799.1 1910.6 4025.1 3633 TRUE FALSE FALSE 5117.661004 3451.663316 3234.814017 3382.965361 3105.100131 3858.965504 2907.062225 2128.094981 3859.183674 3611.390754 1.417088693 0.955771211 0.895725286 0.936748635 0.859807299 1.068553853 0.804970279 0.589272977 1.068614264 1 11.81833881 -7.063568312 7.078603119 1.19703323 0.874061634 0.434254934 0.152358588 0.198438197 19.08871753 0.031368775 0.038606522 8.64E-08 7.063568312 -0.322971595 KGLVGPELHDR ddPTM_HeLa_CUDC101_4h_R1 1 KGLVGPELHDR 11 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 76.522 0.031921 15182000 4427.3 3961.4 4372.2 4743.8 4292.3 4045 3963.4 3966.4 3871.7 4377.9 FALSE FALSE TRUE 3908.338605 4083.446039 4608.574357 4937.272668 3975.66558 3967.848364 4116.269666 4417.918943 3712.106887 4351.860056 0.898084625 0.938322002 1.058989558 1.134520091 0.913555475 0.911759182 0.945864438 1.01517946 0.852993166 1 12.08741645 -4.246833285 21.76896286 0.963861698 1.015179678 0.039155032 0.078942762 1314.910757 1959531.1 0.010783123 0.263578488 5.66E-05 4.246833285 0.05131798 (ac)ADHSFS(ph)DGVPSDSVEAAK ddPTM_HeLa_CUDC101_4h_R1 3 ADHSFSDGVPSDSVEAAK 18 0 Q99733;Q99733-2;E9PNJ7;C9J6D1;C9JZI7;E9PKT8;E9PS34;E9PNW0;E9PJJ2;E9PP22;E9PKI2;C9J1B1 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 ADHS(0.257)FS(0.711)DGVPS(0.012)DS(0.02)VEAAK;ADHS(0.057)FS(0.943)DGVPSDSVEAAK;ADHS(0.286)FS(0.714)DGVPSDSVEAAK ;; 124.25 6.57E-56 324200000 7794.5 5949.07 5321.59 5053.04 6366.5 5966.4 5466.18 4169.33 6784.6 7061.9 TRUE FALSE FALSE 6880.840526 6132.353795 5609.291252 5259.124812 5896.855979 5852.600861 5677.012394 4643.949674 6504.935916 7019.895505 0.980191304 0.873567675 0.799056232 0.74917423 0.840020478 0.833716236 0.808703262 0.66154114 0.926642841 1 12.77723384 -7.062338444 2.006406696 0.9925821 0.785279925 0.718161485 0.052057118 0.099376932 0.781386243 0.008302115 0.010609766 8.66E-08 7.062338444 -0.207302175 TLMLPLTEGS(ph)LR ddPTM_HeLa_CUDC101_4h_R1 2 TLMLPLTEGSLR 12 0 Q7L4E1-3;Q7L4E1 Q7L4E1-3 FAM73B Protein FAM73B 1 0 TLMLPLTEGS(1)LR;TLMLPLTEGS(1)LR ; 158.25 0.00015298 26037000 5531.9 3631.1 3219.8 3830.3 4233.3 4196.6 3405.8 2956.3 2850.5 3746.1 TRUE FALSE FALSE 4883.459068 3742.969887 3393.872127 3986.51619 3921.017893 4116.556847 3537.162847 3292.833242 2733.001183 3723.818031 1.311411843 1.00514307 0.911395804 1.07054538 1.052956364 1.105466705 0.949875321 0.884262661 0.733924472 1 11.86256686 -7.060580116 24.99731161 1.14764628 1.000786778 0 0.162015655 273.6526173 112917.2797 0.021811932 0.026714079 8.70E-08 7.060580116 -0.146859502 HNGSLS(ph)PGLEAR ddPTM_HeLa_CUDC101_4h_R1 2 HNGSLSPGLEAR 12 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 HNGSLS(1)PGLEAR;HNGS(0.443)LS(0.557)PGLEAR ; 165.89 2.41E-05 104258000 5938.4 4276.6 3939 3669.1 5461.3 4425.2 3956.4 3098.7 4695.4 4608.3 TRUE FALSE FALSE 5242.309754 4408.356977 4151.954255 3818.741757 5058.430779 4340.796683 4108.999673 3451.443483 4501.853625 4580.889627 1.144386829 0.962336432 0.906364177 0.833624485 1.104246378 0.94758814 0.896987268 0.75344393 0.982746582 1 12.16141209 -7.060514653 5.451965903 1.068016555 0.915317995 0.280634262 0.093720042 0.181328427 11.12660872 0.016353047 0.02028041 8.70E-08 7.060514653 -0.15269856 DLDEEGS(ph)EKELHENVLDK ddPTM_HeLa_CUDC101_4h_R1 3 DLDEEGSEKELHENVLDK 18 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 DLDEEGS(1)EKELHENVLDK;DLDEEGS(1)EKELHENVLDK;DLDEEGS(1)EKELHENVLDK ;; 59.606 0.024342 107216000 5503.22 3770.04 3241.03 3487.67 2924.05 3074.6 2855.99 2324.13 4455.72 5669.75 TRUE FALSE FALSE 4858.140894 3886.190464 3416.249885 3629.912258 2708.348657 3015.957128 2966.146491 2588.699565 4272.053336 5636.026075 0.861979847 0.689526701 0.606145153 0.644055263 0.480542251 0.535121216 0.526283316 0.459312915 0.757990343 1 12.46046257 -7.060287398 0.602005327 0.981238623 0.485880942 0.768459831 0.079915627 0.093163712 0.073102518 0.012045839 0.016717998 8.70E-08 7.060287398 -0.495357681 STT(ph)PPPAEPVSLPQEPPK ddPTM_HeLa_CUDC101_4h_R1 4 STTPPPAEPVSLPQEPPK 18 0 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 S(0.008)T(0.008)T(0.985)PPPAEPVSLPQEPPK;S(0.03)T(0.03)T(0.94)PPPAEPVSLPQEPPK;S(0.363)T(0.071)T(0.566)PPPAEPVSLPQEPPK;S(0.003)T(0.003)T(0.995)PPPAEPVSLPQEPPK ;;; 248.81 1.41E-55 274979000 20468.9 16933.2 17006.5 16119.7 16836.4 17165.2 15925.9 15167.2 17672.4 19105.8 TRUE FALSE FALSE 18069.56657 17454.89182 17925.92283 16777.13104 15594.41231 16837.80241 16540.1673 16893.77274 16943.93619 18992.15785 0.951422514 0.919057853 0.943859196 0.883371504 0.821097446 0.886566052 0.870894578 0.889513075 0.892154347 1 14.21311621 -7.060008792 0.566937029 0.99137791 0.863744449 0.313240854 0.039131131 0.238535016 0.169367192 0.007890801 0.011009085 8.71E-08 7.060008792 -0.127633461 FLT(ph)TCY(ph)QLLGY(ph)LQKGKSAR ddPTM_HeLa_CUDC101_4h_R1 1 FLTTCYQLLGYLQKGKSAR 19 2 Q14146 Q14146 URB2 Unhealthy ribosome biogenesis protein 2 homolog 3 0 FLT(0.554)T(0.514)CY(0.939)QLLGY(0.99)LQKGKS(0.003)AR 49.224 0.03548 20594000 1567.8 2711.1 1640.7 2670.5 3927.5 3427 3580.8 2072.1 2721 636.93 TRUE FALSE FALSE 1384.024861 2794.625778 1729.401205 2779.414533 3637.77615 3361.635685 3718.912655 2307.979488 2608.839228 633.141512 2.185964487 4.413903882 2.731460775 4.38987885 5.74559728 5.309453923 5.873746366 3.645282207 4.120467824 1 9.306384179 -7.059088909 0.604119737 1.181682438 5.287368205 0.324879027 1.235280661 0.218990242 0.172827419 0.234655278 0.325869284 8.73E-08 7.059088909 4.105685768 Y(ph)T(ph)LRT(ph)S(ph)PRR ddPTM_HeLa_CUDC101_4h_R1 1 YTLRTSPRR 9 2 Q8IYH5-2;Q8IYH5;Q8IYH5-4 Q8IYH5-2 ZZZ3 ZZ-type zinc finger-containing protein 3 4 0 Y(1)T(1)LRT(1)S(1)PRR 59.84 0.0029071 0 326.7 690.5 730.95 804.76 708.13 773.88 649.02 515.22 696.85 771.41 TRUE FALSE FALSE 288.4047212 711.7734866 770.467368 837.5815913 655.8926607 759.1195284 674.0529188 573.8705622 668.1255481 766.821619 0.376104056 0.928212597 1.004754364 1.092276966 0.855339292 0.989955825 0.879021799 0.748375565 0.871292008 1 9.582747201 -7.058944551 24.99838853 0.702581142 0.935781616 0.16771886 0.17335085 341.0685068 144646.4645 0.040388055 0.04946512 8.73E-08 7.058944551 0.233200474 EAALPPVS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 4 EAALPPVSPLK 11 0 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK;EAALPPVS(1)PLK ;;; 125.03 0.0031537 842579800 32824.2 25458.9 22582.8 25831.3 21953.4 24623.1 24154.8 21942.6 25342.1 29348.8 TRUE FALSE FALSE 28976.59703 26243.25853 23803.69448 26884.81207 20333.94142 24153.45539 25086.45873 24440.45689 24297.48791 29174.23203 0.9932257 0.899535539 0.815915033 0.921525956 0.69698292 0.827903726 0.859884116 0.837741225 0.832840703 1 14.83240706 -7.058637176 2.097078633 0.998135802 0.825052029 0.246239643 0.074049822 0.123873759 1.066627716 0.008810275 0.011266204 8.74E-08 7.058637176 -0.173083773 EGSTEFDWGDET(ph)SRDSEASSVAAR ddPTM_HeLa_CUDC101_4h_R1 1 EGSTEFDWGDETSRDSEASSVAAR 24 1 I3L2J0 I3L2J0 CIC 1 0 EGSTEFDWGDET(0.431)S(0.431)RDS(0.128)EAS(0.004)S(0.005)VAAR 70.699 0.00087194 9776400 904.25 984.4 1193.9 1057 1284.5 1253.2 1344.8 922.18 783.8 788.4 TRUE FALSE FALSE 798.2551858 1014.728197 1258.445845 1100.109029 1189.744994 1229.297298 1396.669386 1027.157244 751.4914322 783.7105617 1.018558668 1.294774177 1.605753331 1.403718519 1.518092332 1.568560331 1.782123981 1.310633407 0.958888994 1 9.61417713 -7.05672301 2.591512568 1.007006662 1.538791978 0.803584829 0.118987366 0.078547438 1.040401147 0.018911342 0.024109251 8.78E-08 7.05672301 0.531785316 SEDDSAKFDS(ph)NEEDSASVFSPSFGLK ddPTM_HeLa_CUDC101_4h_R1 6 SEDDSAKFDSNEEDSASVFSPSFGLK 26 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 0 S(0.002)EDDS(0.033)AKFDS(0.546)NEEDS(0.138)AS(0.21)VFS(0.066)PS(0.005)FGLK;S(0.001)EDDS(0.018)AKFDS(0.835)NEEDS(0.119)AS(0.025)VFS(0.002)PSFGLK;S(0.01)EDDS(0.034)AKFDS(0.485)NEEDS(0.143)AS(0.143)VFS(0.18)PS(0.005)FGLK;S(0.001)EDDS(0.01)AKFDS(0.885)NEEDS(0.079)AS(0.023)VFS(0.002)PSFGLK;S(0.001)EDDS(0.003)AKFDS(0.916)NEEDS(0.039)AS(0.039)VFS(0.001)PSFGLK;S(0.001)EDDS(0.006)AKFDS(0.961)NEEDS(0.028)AS(0.003)VFSPSFGLK ;;;;; 80.477 2.39E-05 679084000 12650.9 10681.3 10173.12 10796.9 11023.1 11662.9 10427.8 3940.92 10002.23 11724 TRUE FALSE FALSE 11167.98068 11010.37819 10723.10964 11237.24425 10209.94787 11440.44961 10830.00374 4389.538403 9589.933846 11654.26513 0.958274122 0.944750962 0.920101742 0.964217317 0.876069642 0.981653454 0.929273843 0.37664652 0.82286903 1 13.50857042 -4.261093282 4.641751663 0.964364605 0.340549592 0.89504712 0.056369544 0.026973166 1.550904746 0.005370171 0.054506733 5.48E-05 4.261093282 -0.623815013 down TASPSTS(ph)SIDSATDTR ddPTM_HeLa_CUDC101_4h_R1 2 TASPSTSSIDSATDTR 16 0 Q96P50-4;Q96P50-1;Q96P50 Q96P50-4 ACAP3 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3" 1 0 TASPSTS(0.5)S(0.5)IDSATDTR;TASPS(0.004)T(0.058)S(0.454)S(0.454)IDS(0.018)AT(0.012)DTR ; 202.92 9.33E-17 20600200 2982 3116.5 3334.1 3112.2 3455.5 3215.7 3141.3 3182.7 3390.5 3171.4 TRUE FALSE FALSE 2632.45448 3212.515671 3514.351531 3239.128968 3200.594649 3154.36588 3262.460993 3545.005703 3250.742155 3152.536372 0.835027473 1.019025728 1.114769543 1.027467596 1.015244321 1.000580329 1.034868629 1.124493197 1.031151356 1 11.6222973 -7.05577805 9.38190751 0.922273703 1.04850413 0.282204669 0.063012423 0.354831156 58.03893497 0.011714752 0.014377318 8.79E-08 7.05577805 0.126230427 SVPPATPATPTS(ph)PATVDAAVPGAGKK ddPTM_HeLa_CUDC101_4h_R1 1 SVPPATPATPTSPATVDAAVPGAGKK 26 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-3;Q6NYC8-4 A0A0G2JHC2 PPP1R18 Phostensin 1 0 SVPPAT(0.045)PAT(0.142)PT(0.331)S(0.384)PAT(0.097)VDAAVPGAGKK 91.883 3.27E-05 0 1310.4 1492.7 1506 1454.2 1658.1 1339.5 1378.5 1777.1 1465 1756.1 TRUE FALSE FALSE 1156.796898 1538.688318 1587.418915 1513.508562 1535.785266 1313.951269 1431.669207 1979.397881 1404.61208 1745.654639 0.662672256 0.881439136 0.909354508 0.867014888 0.879776121 0.752698294 0.820133132 1.133900049 0.80463343 1 10.76955245 -7.055024231 24.99993162 0.837093183 0.883294517 0.059271689 0.119507038 1258.854987 571950.524 0.025214277 0.030881149 8.81E-08 7.055024231 0.046201334 GPRIS(ph)APNVDFNLEGPK ddPTM_HeLa_CUDC101_4h_R1 1 GPRISAPNVDFNLEGPK 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GPRIS(1)APNVDFNLEGPK 151.41 0.00053902 13189000 637.99 903.78 746.88 770.54 1375.7 1099.8 1010.9 1030.6 779.53 318.8 TRUE FALSE FALSE 563.2057793 931.6243906 787.258592 801.9659518 1274.217352 1078.823147 1049.890752 1147.919338 747.3974435 316.9037634 1.777213919 2.939770675 2.484219763 2.530629309 4.020833764 3.404261078 3.312963975 3.622296327 2.358436629 1 8.307900982 -7.052764714 0.478999877 1.037243215 3.688437475 0.60877153 0.539424676 0.208145534 0.112710399 0.141678431 0.200730615 8.86E-08 7.052764714 2.65119426 SIQADGLVWGS(ph)SK ddPTM_HeLa_CUDC101_4h_R1 1 SIQADGLVWGSSK 13 0 P24534 P24534 EEF1B2 Elongation factor 1-beta 1 0 SIQADGLVWGS(0.928)S(0.072)K 82.663 0.027173 10669000 955.49 992.27 1078.9 987.72 987.25 1003.2 1012.9 941.5 1117 1064.3 TRUE FALSE FALSE 843.4889106 1022.840663 1137.228597 1028.003491 914.4225344 984.0656314 1051.967892 1048.676554 1070.956787 1057.969496 0.797271484 0.966795986 1.074916244 0.971675927 0.86431843 0.930145562 0.994327243 0.991216248 1.012275676 1 10.04708232 -7.051484382 24.99831224 0.903096907 0.970082624 0 0.075708206 594.6954536 288754.1431 0.015071738 0.01845913 8.88E-08 7.051484382 0.066985717 YGMGTS(ph)VER ddPTM_HeLa_CUDC101_4h_R1 3 YGMGTSVER 9 0 P08559-3;P08559;P08559-2;P08559-4 P08559-3 PDHA1 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial" 1 0 YGMGT(0.002)S(0.998)VER;YGMGT(0.032)S(0.968)VER;YGMGT(0.028)S(0.972)VER ;; 119.62 0.0057906 234119000 17052.9 11988.2 10065.1 11463 11016.9 12997.4 9854.6 9256.3 12979.8 13819.4 TRUE FALSE FALSE 15053.98491 12357.54223 10609.24975 11930.51069 10204.20524 12749.49625 10234.69522 10309.99978 12444.76715 13737.20159 1.095855281 0.899567656 0.772300652 0.868481882 0.742815425 0.92809996 0.745034944 0.750516741 0.905917196 1 13.74580052 -7.050988923 3.864082378 1.044778409 0.805718969 0.572775421 0.074254419 0.079851762 2.444956274 0.010472054 0.013212837 8.89E-08 7.050988923 -0.239059439 EGNT(ph)TEDDFPSS(ph)PGNGNK ddPTM_HeLa_CUDC101_4h_R1 1 EGNTTEDDFPSSPGNGNK 18 0 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 2 0 EGNT(0.572)T(0.428)EDDFPS(0.149)S(0.851)PGNGNK 112.44 0.00011521 0 1147.4 893.17 666.77 814.83 843.63 680.01 850.04 948.75 998.81 1035.8 TRUE FALSE FALSE 1012.903511 920.687509 702.8176031 848.0622894 781.3970956 667.0399422 882.8263275 1056.751865 957.638629 1029.639016 0.983746241 0.894184753 0.682586414 0.823650111 0.75890393 0.647838643 0.857413437 1.026332384 0.930072205 1 10.00792291 -7.050864535 3.82360245 0.991661613 0.793673408 0.369730728 0.099377299 0.150390392 4.500833321 0.016254135 0.020517936 8.89E-08 7.050864535 -0.197988204 ETTSGTSTEPVKNS(ph)SPAPPQPAPGK ddPTM_HeLa_CUDC101_4h_R1 1 ETTSGTSTEPVKNSSPAPPQPAPGK 25 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 ETTSGTSTEPVKNS(0.5)S(0.5)PAPPQPAPGK 83.082 2.35E-05 78198000 4359.8 4204 4574.5 4184.4 4645.2 4070.8 4427.2 4366.1 4102.4 4243 TRUE FALSE FALSE 3848.750853 4333.520257 4821.811307 4355.057919 4302.532851 3993.156272 4597.958587 4863.119176 3933.297336 4217.762447 0.912510105 1.027445313 1.143215477 1.032551732 1.02009843 0.946747552 1.090141667 1.153009264 0.932555445 1 12.04226213 -7.048208743 7.670643517 0.959132518 1.059016792 0.420932872 0.06022366 0.24252126 34.72914684 0.010880974 0.013412615 8.95E-08 7.048208743 0.099884274 T(ph)DSQTIGDFATR ddPTM_HeLa_CUDC101_4h_R1 1 TDSQTIGDFATR 12 0 Q13480-2 Q13480-2 GAB1 GRB2-associated-binding protein 1 1 0 T(0.926)DS(0.07)QT(0.001)IGDFAT(0.003)R 104.9 0.036437 8226600 2124.5 1577.5 1452.4 1270.6 1648.9 1637 1281.2 1566.6 1735.2 1810.9 TRUE FALSE FALSE 1875.469331 1626.100905 1530.921137 1322.42056 1527.263932 1605.776952 1330.616313 1744.935412 1663.674322 1800.128686 1.041852921 0.903324811 0.850450942 0.734625569 0.848419307 0.892034533 0.739178439 0.969339262 0.924197439 1 10.81388433 -7.04763438 2.884457158 1.019741056 0.833004154 0.446790453 0.07172199 0.116324889 1.925476372 0.010347357 0.013200536 8.96E-08 7.04763438 -0.186736902 TVAISDAAQLPHDYCT(ph)T(ph)PGGTLFSTTPGGTRIIYDR ddPTM_HeLa_CUDC101_4h_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDR 36 1 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 TVAISDAAQLPHDY(0.24)CT(0.258)T(0.258)PGGT(0.258)LFS(0.258)T(0.258)T(0.258)PGGT(0.103)RIIY(0.11)DR 40.8 0.024422 5694700 492.23 617.52 802.16 614.26 1006.6 777.66 671.54 802.77 669.76 471.44 TRUE FALSE FALSE 434.5315456 636.5450593 845.527196 639.3121779 932.3451234 762.8274312 697.4415228 894.1540919 642.1522093 468.6358539 0.927226421 1.358293553 1.804230703 1.364198178 1.989487393 1.627761565 1.488237652 1.907993348 1.370258387 1 8.872323524 -7.045909036 3.113508085 0.965860575 1.681916085 0.58533205 0.217980151 0.077606259 1.507238993 0.027477016 0.034999866 9.00E-08 7.045909036 0.71605551 SPS(ph)DSGYSYETIGK ddPTM_HeLa_CUDC101_4h_R1 1 SPSDSGYSYETIGK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.328)PS(0.672)DSGYSYETIGK 165.78 1.54E-05 61137000 3629.9 2478 2252.5 2386.8 2668.9 2561 2321.9 1651.5 2727.4 2653.3 TRUE FALSE FALSE 3204.408625 2554.344243 2374.276963 2484.144021 2472.020564 2512.153192 2411.456461 1839.500084 2614.975418 2637.518054 1.214933342 0.968465122 0.900193635 0.941849106 0.937252566 0.952468624 0.91429003 0.697436016 0.991453088 1 11.36496525 -7.045147591 5.601355111 1.101548449 0.901164496 0.419809527 0.090925321 0.137263827 10.61882577 0.017082199 0.021272541 9.01E-08 7.045147591 -0.200383952 LEPGS(ph)DVEVK ddPTM_HeLa_CUDC101_4h_R1 1 LEPGSDVEVK 10 0 H7BYF1;Q9ULI0-2;Q9ULI0 H7BYF1 ATAD2B ATPase family AAA domain-containing protein 2B 1 0 LEPGS(1)DVEVK 150.51 0.00045376 10139000 3099.8 2147.9 1765.5 2018.5 1725.6 2155.1 1655.9 1516.7 2321.5 2718.7 TRUE FALSE FALSE 2736.446143 2214.074253 1860.94827 2100.823155 1598.305926 2113.995058 1719.768618 1689.354997 2225.806787 2702.529051 1.01255013 0.819260112 0.688595103 0.777354513 0.591411191 0.78222843 0.636355275 0.625101512 0.823601429 1 11.40009441 -7.04412581 2.279724235 1.007347776 0.683815144 0.653058847 0.082102375 0.067918336 0.695938502 0.009368599 0.012026625 9.03E-08 7.04412581 -0.323532632 TEDGDWEWS(ph)DDEMDEKSEEGK ddPTM_HeLa_CUDC101_4h_R1 7 TEDGDWEWSDDEMDEKSEEGK 21 1 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 1 0 TEDGDWEWS(0.999)DDEMDEKSEEGK;T(0.001)EDGDWEWS(0.999)DDEMDEKSEEGK;T(0.001)EDGDWEWS(0.998)DDEMDEKS(0.001)EEGK;T(0.003)EDGDWEWS(0.997)DDEMDEKSEEGK;T(0.001)EDGDWEWS(0.999)DDEMDEKSEEGK;T(0.001)EDGDWEWS(0.996)DDEMDEKS(0.003)EEGK;T(0.057)EDGDWEWS(0.942)DDEMDEKSEEGK ;;;;;; 95.122 0.00022427 487611000 21098.4 20556.8 20930.6 19960.8 24322.7 20886.9 21409.7 21473.1 22943.5 21041.8 TRUE FALSE FALSE 18625.27754 21190.13064 22062.17155 20774.8877 22528.46288 20488.51718 22235.4793 23917.51091 21997.75922 20916.64244 0.890452547 1.013075148 1.054766395 0.993222873 1.077059234 0.979531837 1.063052035 1.143467981 1.051686918 1 14.35236367 -7.042467026 6.142461788 0.948241891 1.04665054 0.167443279 0.05892996 0.156304937 15.75869234 0.009441831 0.011733564 9.07E-08 7.042467026 0.098408649 KGSK(ac)K(ac)AVTK ddPTM_HeLa_CUDC101_4h_R1 1 KGSKKAVTK 9 3 O60814;P57053;P58876;P62807;Q16778;Q5QNW6;Q5QNW6-2;Q8N257;Q93079;U3KQK0;Q99877;Q99880;Q6DRA6;Q6DN03 O60814;P58876;P62807;Q16778;Q5QNW6;Q8N257;Q93079;U3KQK0;Q99880;Q6DRA6 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST2H2BF;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BL;HIST2H2BD;HIST2H2BC Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 2-F;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-L;Putative histone H2B type 2-D;Putative histone H2B type 2-C 0 2 K(0.034)GSK(0.971)K(0.995)AVTK 83.314 0.008887 0 10177 5006.9 7421.9 22622 10840 11280 11926 3983.6 1530.8 471.51 FALSE TRUE FALSE 8984.067487 5161.156654 7823.150364 23544.62294 10040.3548 11064.85279 12385.98981 4437.076922 1467.699776 468.7054376 19.16783286 11.01151436 16.6909742 50.23330445 21.42146003 23.60726355 26.42595716 9.466664063 3.131390546 1 8.872537722 -8.563191703 0.492612993 5.14E-14 24.72242197 0.386955654 10.46805396 0.847513144 0.407101941 9.542300552 3.300113612 2.73E-09 8.563191703 24.72242197 SVSPS(ph)PVPLSSNYIAQISNGQQLMSQPQLHR ddPTM_HeLa_CUDC101_4h_R1 1 SVSPSPVPLSSNYIAQISNGQQLMSQPQLHR 31 0 Q02241;H7BYN4 Q02241 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 S(0.108)VS(0.36)PS(0.531)PVPLSSNY(0.001)IAQISNGQQLMSQPQLHR 119.74 4.44E-14 27640000 1603.2 1119 804.83 821.75 1523.3 1275.8 1254.1 1083.5 1282.1 1127.5 TRUE FALSE FALSE 1415.275326 1153.475064 848.3415443 855.2645169 1410.929194 1251.466241 1302.471057 1206.84126 1229.251295 1120.79358 1.262743963 1.029159235 0.756911495 0.763088344 1.258866235 1.116589409 1.162097179 1.076773888 1.09676868 1 10.13030488 -7.04206173 24.72862848 1.125225025 1.020403749 0.069588879 0.161373038 970.4004041 570508.8994 0.031111687 0.03810597 9.08E-08 7.04206173 -0.104821277 KGVAINFVK ddPTM_HeLa_CUDC101_4h_R1 1 KGVAINFVK 9 1 I3L3H2;P38919 I3L3H2 EIF4A3 "Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed" 0 0 113.18 0.00023858 0 2541.6 2118 1740.8 1950 2204.8 1888.4 1621.9 1935.7 1471.6 872.85 FALSE FALSE TRUE 2243.677501 2183.25307 1834.912914 2029.529429 2042.156297 1852.381916 1684.457226 2156.052264 1410.940025 867.6582494 2.585900039 2.51625922 2.114787608 2.339088495 2.353641308 2.134921114 1.941383289 2.484909543 1.626147191 1 9.7609831 -9.320278059 0.972432408 0.976136659 2.310246125 0.674821362 0.263747447 0.167178941 0.275161674 0.15920703 0.039335504 4.78E-10 9.320278059 1.334109466 KGVITVK(ac)DGK ddPTM_HeLa_CUDC101_4h_R1 1 KGVITVKDGK 10 2 P10809;E7EXB4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 KGVITVK(1)DGK 137.4 3.98E-07 0 9856.1 8799 7131.2 8293.3 9648.1 8620.9 7839.4 7782.3 7066.7 8128.7 FALSE TRUE FALSE 8700.782899 9070.086761 7516.734243 8631.536621 8936.378885 8456.470696 8141.768284 8668.205575 6775.407635 8080.350131 1.076782906 1.122486849 0.930248581 1.068213194 1.105939562 1.046547558 1.007600927 1.072751234 0.838504214 1 12.98020209 -9.459552882 1.225259248 1.000324656 1.05481674 0.21993618 0.072830516 0.745702972 2.021339565 0.033573227 0.00851537 3.47E-10 9.459552882 0.054492084 KGVNLPGAAVDLPAVSEK ddPTM_HeLa_CUDC101_4h_R1 2 KGVNLPGAAVDLPAVSEK 18 1 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 107.72 0.00063079 35529000 6435.8 5801.8 6343.2 6269 5754.6 5975.7 5711.3 5244.6 6379.3 7922.3 FALSE FALSE TRUE 5681.40528 5980.546581 6686.132579 6524.676917 5330.094623 5861.723479 5931.586754 5841.624065 6116.342554 7875.177807 0.721432001 0.75941734 0.849013539 0.828511695 0.676822131 0.744329033 0.753200359 0.741776784 0.776660884 1 12.94309678 -9.336068492 0.795241387 1.019501517 0.757544677 0.059796891 0.082969075 0.293006872 0.291707106 0.050370857 0.009980015 4.61E-10 9.336068492 -0.26195684 KGVNLPGAAVDLPAVSEKDIQDLK ddPTM_HeLa_CUDC101_4h_R1 2 KGVNLPGAAVDLPAVSEKDIQDLK 24 2 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 97.49 7.10E-06 29643000 4029.7 4062.4 3804.9 4160.2 5270.6 4476 3883 4924.2 4027.3 4298.7 FALSE FALSE TRUE 3557.344675 4187.557729 4010.604403 4329.870938 4881.798339 4390.627758 4032.768611 5484.751024 3861.292989 4273.131141 0.832491341 0.979974073 0.938563379 1.013278272 1.142440561 1.027496609 0.943750257 1.28354381 0.903621457 1 12.06107788 -6.123126102 2.609266122 0.924566115 1.083424842 0.420037804 0.091981452 0.240875642 3.193862532 0.015216184 0.027128185 7.53E-07 6.123126102 0.158858727 TDSS(ph)PNQAVR ddPTM_HeLa_CUDC101_4h_R1 1 TDSSPNQAVR 10 0 A0A0U1RRM4 A0A0U1RRM4 1 0 T(0.102)DS(0.199)S(0.7)PNQAVR 84.169 0.037282 5900000 1698.7 1798.3 1724.2 1806.9 2315.7 1979.4 1789.7 1338.4 2174.9 1862.4 TRUE FALSE FALSE 1499.580961 1853.703491 1817.415467 1880.593192 2144.875425 1941.646243 1858.729329 1490.758046 2085.249701 1851.322362 0.810005319 1.001286178 0.98168504 1.015810769 1.158563991 1.048788846 1.004000906 0.805239583 1.126356892 1 10.85434041 -7.041794191 23.80628069 0.910036338 1.010516826 0 0.11459383 380.3294831 216637.6851 0.017762387 0.02175602 9.08E-08 7.041794191 0.100480487 TGSGSPFAGNS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 4 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR;TGSGSPFAGNS(1)PAR ;;; 215.93 2.87E-24 394524000 7638.8 6019.5 5880.4 5926.6 6236.4 5605.6 5831.1 6378.8 6109.7 6225.8 TRUE FALSE FALSE 6743.391444 6204.95366 6198.312211 6168.312365 5776.353197 5498.68252 6056.00748 7104.936808 5857.85558 6188.768665 1.08961763 1.002615221 1.001542075 0.996694609 0.933360659 0.888493789 0.978548045 1.148037226 0.946530061 1 12.59543668 -7.041100947 7.864104706 1.042560325 0.984970629 0 0.072294204 0.454352745 78.77512678 0.011676568 0.014421408 9.10E-08 7.041100947 -0.057589696 KHEAFESDLAAHQDR ddPTM_HeLa_CUDC101_4h_R1 3 KHEAFESDLAAHQDR 15 1 O43707;O43707-2;P12814-4;P12814-3;P12814;P12814-2;H9KV75;A0A494C1A0;P35609;P35609-2;A0A494C060;F6THM6;H7C5W8 O43707;P12814-4 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 0 0 ;; ;; 140.31 0.00029789 129292000 15114.3 8953.8 7997.8 9515.3 8120 11029.3 9776.3 9943.1 10805.9 13138.8 FALSE FALSE TRUE 13342.62467 9229.655965 8430.18526 9903.375063 7521.003777 10818.93448 10153.37517 11074.98231 10360.47623 13060.64983 1.021589648 0.706676627 0.645464458 0.758260515 0.575852188 0.828361117 0.77740199 0.847965641 0.793258862 1 13.67293906 -7.26304759 24.97240591 1.010195116 0.730972606 0.405356429 0.10263119 49.95736705 775738.9772 0.012779533 0.015026083 5.46E-08 7.26304759 -0.27922251 KHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSHNVNTR ddPTM_HeLa_CUDC101_4h_R1 1 KHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSHNVNTR 40 2 O43707;O43707-2 O43707 ACTN4 Alpha-actinin-4 0 0 42.166 0.0087924 17133000 1244.3 1192.5 1262.4 1156.8 2574.4 1872.1 2184.1 1565.6 2013.8 1893.3 FALSE FALSE TRUE 1098.44504 1229.239512 1330.649163 1203.979304 2384.491641 1836.392812 2268.341469 1743.821576 1930.790312 1882.038567 0.583646403 0.653142573 0.707025449 0.639720846 1.266972783 0.975746642 1.205257697 0.926559958 1.02590369 1 10.87808048 -5.766330709 24.99946339 0.76803062 1.093186831 0.482994393 0.164926804 91.25308161 466395.0954 0.02767957 0.051338915 1.71E-06 5.766330709 0.325156211 KHEAFETDFTVHKDR ddPTM_HeLa_CUDC101_4h_R1 1 KHEAFETDFTVHKDR 15 2 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 47.227 0.032061 14423000 3622.3 3997.1 4280.3 4347.8 5253.8 5030.3 4920.5 5339.4 4585.7 3632.6 FALSE FALSE TRUE 3197.699485 4120.245913 4511.705965 4525.122077 4866.237641 4934.355409 5110.285333 5947.215713 4396.675505 3610.993134 0.885545712 1.141028454 1.249436318 1.25315167 1.347617528 1.366481526 1.415202174 1.646975082 1.217580688 1 11.81817996 -6.169095667 0.660381847 0.940580497 1.519415984 0.664820585 0.118109138 0.207564278 0.172587788 0.020093804 0.056739279 6.77E-07 6.169095667 0.578835487 KHEAIETDIAAYEER ddPTM_HeLa_CUDC101_4h_R1 2 KHEAIETDIAAYEER 15 1 A0A087WUZ3;Q01082;Q01082-2;F8W6C1;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ; ; 103.39 0.0029984 46489000 12773 11065.4 11223.9 11931.4 10610.4 11152.2 11143.1 11924.1 11996.8 12847.5 FALSE FALSE TRUE 11275.7683 11406.31186 11830.69798 12418.01406 9827.691931 10939.49037 11572.8931 13281.49135 11502.28683 12771.0825 0.88291406 0.893135868 0.926366108 0.972354071 0.769526932 0.85658286 0.906179496 1.039965981 0.900650891 1 13.6405932 -9.314721229 0.903238619 1.003656124 0.900977299 0 0.07342266 0.766341159 1.056429945 0.054402475 0.012590552 4.84E-10 9.314721229 -0.102678825 KHLEINPDHPIVETLR ddPTM_HeLa_CUDC101_4h_R1 2 KHLEINPDHPIVETLR 16 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ; ; 90.498 0.002612 117272000 9168.4 9854.6 9163.4 9828.4 11435.6 9494.6 9939.7 10449.1 10218.1 9419.8 FALSE FALSE TRUE 8093.69405 10158.20855 9658.801122 10229.24463 10592.01857 9313.506324 10323.07756 11638.58331 9796.905593 9363.770611 0.8643627 1.08484167 1.031507661 1.092427939 1.131170232 0.994632046 1.102448788 1.242937679 1.046256471 1 13.19287388 -7.237706059 20.31926364 0.935949106 1.092003456 0.337995869 0.076818964 47.3365402 40526.68206 0.012834807 0.01570667 5.78E-08 7.237706059 0.15605435 KHLEINPDHSIIETLR ddPTM_HeLa_CUDC101_4h_R1 2 KHLEINPDHSIIETLR 16 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ; ; 113.4 0.00038286 71339000 7260 6666.3 6895.2 6973.7 8925.9 7976 7550.8 8488.8 8160.6 9105.8 FALSE FALSE TRUE 6408.993805 6871.680801 7267.975369 7258.117629 8267.45414 7823.871089 7842.036885 9455.130679 7824.216614 9051.638297 0.708047935 0.759164317 0.802945846 0.80185679 0.9133655 0.86435967 0.866366577 1.044576724 0.864397842 1 13.14396322 TMIIS(ph)PERLDPFADGGK ddPTM_HeLa_CUDC101_4h_R1 2 TMIISPERLDPFADGGK 17 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 TMIIS(1)PERLDPFADGGK;T(0.037)MIIS(0.963)PERLDPFADGGK ; 103.01 0.011653 57987000 4426.6 3458.6 2830.1 2645.1 3635 3251.2 3147.8 2325.06 3536.2 4127.8 TRUE FALSE FALSE 3907.720658 3565.155367 2983.103767 2752.978611 3366.853292 3189.188777 3269.2117 2589.735432 3390.436339 4103.247662 0.952348232 0.868861853 0.72701041 0.670926748 0.820533775 0.777235263 0.796737601 0.631142852 0.826281185 1 12.00255052 -7.040918798 2.202091903 0.979332791 0.74218537 0.555062604 0.072944638 0.095769849 0.915207626 0.0095273 0.012252663 9.10E-08 7.040918798 -0.237147421 LSGINEIPRPFS(ph)PPVTSNTS(ph)PPPAAPLAR ddPTM_HeLa_CUDC101_4h_R1 1 LSGINEIPRPFSPPVTSNTSPPPAAPLAR 29 1 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 2 0 LS(0.003)GINEIPRPFS(0.986)PPVT(0.06)S(0.056)NT(0.425)S(0.469)PPPAAPLAR 54.505 0.0088207 27538000 1278.3 802.3 703.34 740.28 935.01 675.56 773.27 537.97 1024.8 851.99 TRUE FALSE FALSE 1128.459612 827.017912 741.3646879 770.4718182 866.0361751 662.6748186 803.0952829 599.2103303 982.5573102 846.9223256 1.332423975 0.976497947 0.87536326 0.909731383 1.022568598 0.782450525 0.948251402 0.707515096 1.160150442 1 9.72608585 -7.0408947 6.576366203 1.157286547 0.884967881 0.579834576 0.110065753 0.146105545 17.79511743 0.02355396 0.029228966 9.10E-08 7.0408947 -0.272318666 S(ph)PGPPPPVGVK ddPTM_HeLa_CUDC101_4h_R1 3 SPGPPPPVGVK 11 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 S(1)PGPPPPVGVK;S(1)PGPPPPVGVK;S(1)PGPPPPVGVK ;; 123.62 0.0034595 46784000 7204.8 5420 5241.1 4936.9 5291.2 5127.5 4849.3 7339.13 5826.9 5644.7 TRUE FALSE FALSE 6360.264266 5586.983776 5524.449719 5138.248121 4900.878718 5029.70148 5036.339125 8174.586893 5586.712716 5611.125073 1.133509623 0.995697601 0.984552946 0.915725109 0.873421757 0.896380212 0.897563155 1.456853445 0.995649294 1 12.45407436 -7.040116056 19.78585722 1.063128334 0.984867868 9.01E-05 0.163986509 118.4547145 58423.1367 0.026429902 0.032379991 9.12E-08 7.040116056 -0.078260466 DPDANWDSPS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 DPDANWDSPSR 11 0 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 DPDANWDS(0.236)PS(0.764)R 106.55 0.007984 7938000 722.52 498.94 370.83 519.73 400.03 388.87 381.85 360.34 418.56 629.61 TRUE FALSE FALSE 637.8273009 514.31175 390.8781915 540.9268359 370.5205839 381.4529527 396.5780824 401.3596491 401.3067796 625.8650517 1.019113144 0.821761414 0.62454069 0.864286693 0.592013538 0.609481152 0.633647911 0.641287843 0.641203369 1 9.289707808 -7.03911858 2.649878624 1.00970745 0.662521019 0.245867223 0.137442938 0.077344786 1.079757373 0.012284712 0.015750614 9.14E-08 7.03911858 -0.347186431 ATEDGEEDEVS(ph)AGEK ddPTM_HeLa_CUDC101_4h_R1 1 ATEDGEEDEVSAGEK 15 0 Q9BXW9 Q9BXW9 FANCD2 Fanconi anemia group D2 protein 1 0 ATEDGEEDEVS(1)AGEK 193.77 3.95E-16 6325200 1214.3 755.71 540.1 638.45 576.02 814.73 731.73 522.88 842.01 869.15 TRUE FALSE FALSE 1071.961595 778.9925294 569.2994397 664.4887506 533.5281522 799.1903827 759.9530712 582.4025456 807.3019914 863.9802571 1.240724641 0.901632327 0.658926445 0.769101776 0.617523546 0.925010006 0.879595413 0.674092424 0.934398656 1 9.754854535 -7.038138311 5.187674271 1.112803624 0.762524048 0.557007616 0.118778757 0.092881468 6.312606632 0.02062171 0.025838312 9.16E-08 7.038138311 -0.350279576 YMEDSTY(ph)YK ddPTM_HeLa_CUDC101_4h_R1 1 YMEDSTYYK 9 0 Q05397-5;Q05397;Q05397-7;Q05397-2;E7ESA6;H0YBP1;H0YB16;H0YBZ1;E9PEI4;Q05397-3;Q05397-4 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 YMEDS(0.136)T(0.334)Y(0.47)Y(0.059)K 163.15 0.00026067 44184000 1753.9 1608.3 1863.7 1919 2146.8 1786.7 1903.2 1280.7 1713.1 1468.4 TRUE FALSE FALSE 1548.310501 1657.849817 1964.457259 1997.265115 1988.434841 1752.621674 1976.607062 1426.489711 1642.485293 1459.665891 1.060729383 1.135773485 1.345826652 1.368302929 1.362253412 1.200700574 1.354150339 0.977271388 1.12524743 1 10.51142247 -7.037783906 2.81851446 1.028203278 1.27723049 0.380412005 0.11619602 0.155312127 2.464364518 0.018228767 0.02334867 9.17E-08 7.037783906 0.249027213 KHVTTAEGTPGTTDQEGPPPDGPPEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 KHVTTAEGTPGTTDQEGPPPDGPPEKR 27 2 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 0 1 KHVTTAEGTPGTTDQEGPPPDGPPEK(1)R 111.24 3.84E-08 1232600 569.34 268.67 251.99 243.65 564.26 704.79 512.49 313.65 531.9 518.07 FALSE TRUE FALSE 502.6028283 276.9474042 265.6133416 253.5871001 522.635664 691.347305 532.256911 349.3546482 509.9748569 514.9884966 0.975949621 0.537773962 0.515765582 0.492413135 1.0148492 1.342451937 1.033531651 0.678373693 0.99026456 1 9.008396397 -7.479317201 24.88457502 0.989389746 0.812793294 0.099672365 0.255886069 853.4373031 487530.297 0.04857149 0.055160953 3.32E-08 7.479317201 -0.176596451 TSS(ph)PLFNK ddPTM_HeLa_CUDC101_4h_R1 2 TSSPLFNK 8 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 TS(0.024)S(0.976)PLFNK;T(0.323)S(0.049)S(0.628)PLFNK ; 128.6 0.0058363 151013600 12327.6 10548 9931.5 10674 11601.1 10050.3 9753.6 9815.2 10253.1 11374.1 TRUE FALSE FALSE 10882.57742 10872.97138 10468.42693 11109.33186 10745.30997 9858.607272 10129.79962 10932.52269 9830.462878 11306.44635 0.962510862 0.961661254 0.925881272 0.982566185 0.950370226 0.8719457 0.895931339 0.966928278 0.869456465 1 13.46485794 -7.037331347 0.259782718 1.008597102 0.901681477 0 0.050024197 1.334389367 0.305676877 0.040576436 0.055401837 9.18E-08 7.037331347 -0.106915625 GNDT(ph)PLALESTNTEK ddPTM_HeLa_CUDC101_4h_R1 1 GNDTPLALESTNTEK 15 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 GNDT(1)PLALESTNTEK 146.76 0.0014054 5055700 2097 1457.5 1345.3 1585.8 1376.6 1451.2 1432.8 1528.3 1476.9 1474.3 TRUE FALSE FALSE 1851.192839 1502.403847 1418.030987 1650.475778 1275.050961 1423.520778 1488.063576 1702.275494 1416.021557 1465.530798 1.263155194 1.025160201 0.967588664 1.126196584 0.870026725 0.971334604 1.015375165 1.161541946 0.966217536 1 10.51720757 -7.037091505 24.68249893 1.125314581 1.012994671 0 0.109150988 668.1047403 444588.3523 0.020041639 0.024550282 9.18E-08 7.037091505 -0.112319911 FQPPQVPDQAPAEAPT(ph)EKTEVSPVPR ddPTM_HeLa_CUDC101_4h_R1 1 FQPPQVPDQAPAEAPTEKTEVSPVPR 26 1 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 1 0 FQPPQVPDQAPAEAPT(0.358)EKT(0.358)EVS(0.284)PVPR 73.546 0.00031794 20719000 648.94 866.67 1024.9 899.55 1349.4 891.2 959.63 1256.2 981.66 686.16 TRUE FALSE FALSE 572.8722369 893.3710754 1080.309194 936.2375372 1249.85745 874.2018448 996.6432506 1399.20073 941.1955593 682.0786898 0.83989171 1.30977714 1.583848331 1.372623938 1.832424131 1.281673006 1.461185147 2.051377284 1.379892926 1 9.413794379 -7.03674423 2.969903722 0.924621376 1.576810382 0.425112892 0.256515194 0.109782639 1.944356893 0.034625511 0.044306734 9.19E-08 7.03674423 0.652189006 (ac)PCSEETPAIS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 PCSEETPAISPSK 13 0 P33316-2;H0YNJ9 P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 PCSEET(0.001)PAIS(0.944)PS(0.055)K 130.61 0.00092144 8432600 2831.6 2073.9 1938.2 1850.4 1875 1550.4 1595.8 2378 1903.7 2636.7 TRUE FALSE FALSE 2499.68414 2137.794401 2042.984955 1925.86731 1736.684986 1520.828703 1657.350541 2648.701908 1825.22868 2621.016791 0.953707793 0.815635523 0.77946275 0.7347787 0.662599718 0.580243785 0.632331142 1.010562739 0.69638191 1 11.35591088 -7.036083686 1.242535643 0.985426049 0.707749228 0.071065688 0.142011292 0.226111017 0.680135614 0.020444176 0.026867387 9.20E-08 7.036083686 -0.277676821 S(ph)GEWQETSGEIQWVSTEKTDGTEEKHKK ddPTM_HeLa_CUDC101_4h_R1 1 SGEWQETSGEIQWVSTEKTDGTEEKHKK 28 3 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3;Q8WVX6;F6QZY1 Q7Z5K2 WAPAL Wings apart-like protein homolog 1 0 S(0.754)GEWQET(0.123)S(0.123)GEIQWVSTEKTDGTEEKHKK 41.89 0.039592 39963000 635.7 1363.9 909.01 1250.1 1915.5 1924 1609.5 1026.4 1673.2 307.57 TRUE FALSE FALSE 561.1842097 1405.920142 958.1538302 1301.084481 1774.197381 1887.302906 1671.578954 1143.241227 1604.229988 305.74056 1.835491535 4.598408999 3.133878705 4.255518082 5.80295065 6.172890198 5.467311744 3.739252742 5.247030319 1 8.256164145 -7.035850866 0.762502237 1.153322224 5.321025838 0.096990438 1.545460692 0.180432919 0.213650428 0.20446422 0.281423331 9.21E-08 7.035850866 4.167703614 KGDRS(ph)PEPGQTWTR ddPTM_HeLa_CUDC101_4h_R1 3 KGDRSPEPGQTWTR 14 2 Q09666;E9PKR9;E9PLK4;E9PJZ0;E9PJC6;Q09666-2 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 KGDRS(1)PEPGQTWTR;KGDRS(1)PEPGQTWTR;KGDRS(1)PEPGQTWTR ;; 73.597 0.016087 1816910000 7739.6 7998.8 8157.2 8396 8955.5 9166.4 7785.5 7715.4 8157 8270.1 TRUE FALSE FALSE 6832.37582 8245.233547 8598.202906 8738.425171 8294.870607 8991.566192 8085.789343 8593.689949 7820.765007 8220.909077 0.831097359 1.002958854 1.045894417 1.0629512 1.008996758 1.09374354 0.983563894 1.045345456 0.951326056 1 13.00508222 -7.035793759 10.24115754 0.9200438 1.038342834 0.523399025 0.047881208 0.473006747 133.8033471 0.010987199 0.013537253 9.21E-08 7.035793759 0.118299034 KIEFSLPDLEGR ddPTM_HeLa_CUDC101_4h_R1 2 KIEFSLPDLEGR 12 1 P35998;P35998-2 P35998 PSMC2 26S protease regulatory subunit 7 0 0 ; ; 95.183 0.0014011 0 4422.1 4337.8 3445.5 3322.2 4514.4 3920.4 3523.5 3199.7 3747.3 4840.2 FALSE FALSE TRUE 3903.748141 4471.442476 3631.774152 3457.693676 4181.381706 3845.624902 3659.402575 3563.940914 3592.834708 4811.410275 0.811352165 0.929341341 0.754825289 0.71864453 0.869055322 0.799271873 0.76056756 0.740726879 0.746732143 1 12.23224411 -13.52287875 0.167588903 1.838443027 0.739575627 0 0.097225561 25.1009673 0.276034853 6.848793829 0.092342932 3.00E-14 13.52287875 -1.0988674 KIGEK(ac)VSK ddPTM_HeLa_CUDC101_4h_R1 1 KIGEKVSK 8 2 Q6PID6;A0A1B0GU95;A0A1B0GV67;A0A1B0GUJ4 Q6PID6 TTC33 Tetratricopeptide repeat protein 33 0 1 K(0.001)IGEK(0.999)VSK 65.5 0.038943 0 6955.6 5868.2 7720.6 8083.9 7658.1 5597 7224 7406.7 6464.5 6538.2 FALSE TRUE FALSE 6140.275112 6048.992286 8137.99899 8413.596384 7093.17722 5490.24655 7502.6321 8249.848789 6198.030574 6499.310496 0.944757927 0.930712926 1.252132668 1.294536765 1.091373804 0.844742924 1.154373545 1.269342155 0.953644326 1 12.66607096 -6.776987279 24.96822903 0.969944526 1.14111513 0.378260666 0.120886019 223.1170608 358300.6348 0.020615559 0.027147371 1.67E-07 6.776987279 0.171170604 AENNSEVGAS(ph)GYGVPGPTWDR ddPTM_HeLa_CUDC101_4h_R1 1 AENNSEVGASGYGVPGPTWDR 21 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 1 0 AENNS(0.303)EVGAS(0.619)GY(0.077)GVPGPT(0.001)WDR 150.13 5.79E-07 14777000 1549 987.26 940.12 1020.7 1103.5 883.35 781.48 990.11 842.83 1032.2 TRUE FALSE FALSE 1367.428568 1017.67631 990.9457309 1062.328558 1022.097003 866.5015705 811.6219454 1102.82012 808.0881907 1026.060428 1.33269789 0.991828826 0.965777164 1.035346972 0.99613724 0.844493703 0.79100794 1.074810108 0.787563937 1 10.00289998 -7.034679184 16.5810139 1.157380485 0.947803341 0 0.159367688 9.871523834 4719.679693 0.023995207 0.029436309 9.23E-08 7.034679184 -0.209577143 KILDSVGIEADDDRLNK ddPTM_HeLa_CUDC101_4h_R1 2 KILDSVGIEADDDRLNK 17 2 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 0 ; ; 106.29 0.00067566 73994000 4116 3698.7 3839.8 4129.4 4402 3824.2 3749.3 4441.8 4021.8 4389 FALSE FALSE TRUE 3633.528719 3812.652563 4047.391203 4297.814781 4077.27323 3751.259757 3893.911757 4947.436558 3856.019702 4362.894033 0.832825343 0.873881542 0.927684966 0.985083467 0.934534096 0.859809963 0.892506609 1.133980454 0.883821535 1 12.09106972 -6.512443499 23.85519154 0.914620652 0.950868146 0.10363664 0.079532154 911.4467582 2083585.87 0.014267631 0.020937478 3.07E-07 6.512443499 0.036247494 S(ph)RT(ph)PPSAPSQSR ddPTM_HeLa_CUDC101_4h_R1 3 SRTPPSAPSQSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(1)RT(0.999)PPS(0.001)APSQSR;S(1)RT(1)PPSAPSQSR;S(0.996)RT(0.989)PPS(0.015)APSQSR ;; 87.647 0.036082 413780000 6987.4 10231 11076.1 10506.2 11373.6 12369.5 9716.4 7351.8 13541.2 12704.6 TRUE FALSE FALSE 6168.347564 10546.20498 11674.90747 10934.68825 10534.59219 12133.5724 10091.1648 8188.699195 12983.026 12629.03247 0.48842598 0.835076242 0.924449873 0.865837369 0.834156711 0.960768168 0.799044964 0.648402735 1.028030139 1 13.6244565 -7.0341484 24.96362385 0.753335378 0.846554816 0 0.163596128 1686.184592 1232653.972 0.033660413 0.041237761 9.24E-08 7.0341484 0.093219438 IEDS(ph)EPHIPLIDDTDAEDDAPTKR ddPTM_HeLa_CUDC101_4h_R1 2 IEDSEPHIPLIDDTDAEDDAPTKR 24 1 H0YHH6;A0A0U1RQU3;E7ERY9;P20020-6;P20020;P20020-4;P20020-1 H0YHH6 ATP2B1 Calcium-transporting ATPase;Plasma membrane calcium-transporting ATPase 1 1 0 IEDS(1)EPHIPLIDDTDAEDDAPTKR;IEDS(1)EPHIPLIDDTDAEDDAPTKR ; 99.836 1.63E-05 11089800 10729.4 6386.2 6422.4 6940.2 5491.7 6148.8 6133.8 5973.6 4955 6614.8 TRUE FALSE FALSE 9471.715997 6582.951252 6769.614371 7223.251354 5086.588232 6031.521885 6370.382721 6653.610478 4750.752803 6575.454875 1.440465515 1.001140055 1.029527918 1.098517364 0.773572069 0.917278272 0.968812476 1.011885961 0.722497971 1 12.68287498 -7.033384927 23.15707889 1.20867162 0.966151201 0 0.199185471 243.9346294 169202.0974 0.02977101 0.036481332 9.26E-08 7.033384927 -0.242520419 RGEGDAPFSEPGTTS(ph)TQRPSSPETATK ddPTM_HeLa_CUDC101_4h_R1 1 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RGEGDAPFSEPGT(0.021)T(0.137)S(0.22)T(0.22)QRPS(0.167)S(0.22)PET(0.014)AT(0.002)K 65.883 0.0010059 27909000 1278.2 1089.9 983.8 975.6 866.68 1131.9 787.31 906.68 1089.4 1263.4 TRUE FALSE FALSE 1128.371334 1123.478527 1036.987204 1015.389185 802.7467431 1110.310893 817.6768104 1009.892786 1044.494471 1255.885241 0.898466912 0.894571009 0.825702198 0.808504752 0.639187974 0.884086266 0.651076057 0.804128238 0.831679868 1 10.29448893 -7.032886719 0.476313121 0.988119235 0.728301585 0.343544651 0.084924867 0.383126496 0.204837679 0.025238632 0.036399739 9.27E-08 7.032886719 -0.25981765 GAADEVEVEPPEPPGPVAS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 GAADEVEVEPPEPPGPVASR 20 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 GAADEVEVEPPEPPGPVAS(1)R 209.66 1.43E-24 3017800 1324.4 1020.8 880.59 895.66 579.95 1075.5 637.4 640.63 1213.9 1399.6 TRUE FALSE FALSE 1169.15584 1052.249638 928.197359 932.1888862 537.1682439 1054.986629 661.9847315 713.5567297 1163.862528 1391.275117 0.840348415 0.756320317 0.667155869 0.670024839 0.386097787 0.758287571 0.475811522 0.512879675 0.836543768 1 10.44219202 -7.031142686 0.476309419 0.98743622 0.505821034 0.660824431 0.104142573 0.283318398 0.15141987 0.034557609 0.049916975 9.31E-08 7.031142686 -0.481615186 SVS(ph)QERLEDSVLMK ddPTM_HeLa_CUDC101_4h_R1 1 SVSQERLEDSVLMK 14 1 Q5T5U3;A0A087WW76;A0A452Q6Z5;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 S(0.026)VS(0.974)QERLEDSVLMK 69.289 0.026867 24564000 1822.9 2597 2665.3 2378.9 3077.5 2783.7 2269 3095 2718.9 2931.8 TRUE FALSE FALSE 1609.222425 2677.010492 2809.39418 2475.921824 2850.478956 2730.60556 2356.51609 3447.32229 2606.825791 2914.361523 0.552169802 0.918558137 0.963982731 0.849558919 0.978080082 0.936948124 0.808587429 1.182873937 0.894475778 1 11.50896414 -7.030125474 24.80625572 0.785726695 0.942325426 0.14880788 0.140861509 929.7802661 765608.4738 0.030391702 0.03725123 9.33E-08 7.030125474 0.156598731 APSPAPS(ph)SVPLGSEKPSNVSQDR ddPTM_HeLa_CUDC101_4h_R1 3 APSPAPSSVPLGSEKPSNVSQDR 23 1 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 APS(0.152)PAPS(0.638)S(0.21)VPLGSEKPSNVSQDR;APS(0.106)PAPS(0.844)S(0.05)VPLGSEKPSNVSQDR;APS(0.001)PAPS(0.838)S(0.161)VPLGSEKPSNVSQDR ;; 130.47 7.52E-08 804470000 6423.5 4633.4 4193.17 4296.31 4809.16 4060.94 3854.24 5238.8 4611.2 4905.7 TRUE FALSE FALSE 5670.547067 4776.149562 4419.865454 4471.532092 4454.397848 3983.484335 4002.899328 5835.163816 4421.124384 4876.520678 1.162826417 0.979417473 0.906356344 0.916951324 0.913437703 0.816870182 0.820851503 1.196583425 0.906614506 1 12.25163646 -7.030107484 5.460315459 1.07697266 0.918795925 0.059989419 0.11820655 0.173206713 14.73156204 0.018207855 0.022870323 9.33E-08 7.030107484 -0.158176735 KIQALQQQADEAEDR ddPTM_HeLa_CUDC101_4h_R1 1 KIQALQQQADEAEDR 15 1 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A590UK79;A0A590UJB9 P67936 TPM4 Tropomyosin alpha-4 chain 0 0 115.04 0.0016679 24514000 2320.7 2463.6 1774.6 2080 2584.9 2166.6 1762.4 2508.9 2225.4 2497.4 FALSE FALSE TRUE 2048.671064 2539.500596 1870.540244 2164.831391 2394.217077 2125.275715 1830.376358 2794.503035 2133.66807 2482.545354 0.825230065 1.022942277 0.753476766 0.872020883 0.964420277 0.856087367 0.737298255 1.125660416 0.859467911 1 11.27760436 -9.527881375 1.246556179 1.000887944 0.881685333 0 0.120750693 0.732278461 2.012657584 0.075221895 0.01743979 2.97E-10 9.527881375 -0.119202611 TLSASTQDLS(ph)PH ddPTM_HeLa_CUDC101_4h_R1 1 TLSASTQDLSPH 12 0 Q6P597-2;Q6P597;Q6P597-3 Q6P597-2 KLC3 Kinesin light chain 3 1 0 TLSASTQDLS(1)PH 124.48 0.0026142 6141600 1352 999.97 908.78 786.18 1285.5 1197.2 933.27 889.63 968.51 1004.4 TRUE FALSE FALSE 1193.520609 1030.77789 957.9113957 818.2438186 1190.671226 1174.365405 969.2665365 990.9018832 928.5876079 998.4257841 1.195402431 1.032403116 0.959421733 0.819533942 1.192548555 1.176217024 0.970794777 0.992464236 0.93005171 1 9.963511382 -7.028787794 24.2275495 1.093411762 1.020160812 0 0.121255894 1050.92904 884450.8994 0.020916091 0.025648546 9.36E-08 7.028787794 -0.07325095 KIQVLQQQADDAEER ddPTM_HeLa_CUDC101_4h_R1 1 KIQVLQQQADDAEER 15 1 P06753-2;A0A087WWU8;P06753-5;P06753-3;P06753-6;P06753-4;D6R904;Q5VU61 P06753-2 TPM3 Tropomyosin alpha-3 chain 0 0 128.73 0.0007471 20252000 1193.3 740.51 836.12 972.54 1147.6 940.04 934.48 937.68 856.94 1244.4 FALSE FALSE TRUE 1053.423183 763.3242354 881.3231763 1012.204385 1062.943834 922.1103032 970.5232066 1044.421701 821.6165705 1236.998253 0.851596338 0.61707786 0.712469216 0.818274708 0.859292914 0.74544188 0.784579286 0.844319463 0.664201884 1 10.27262775 -8.221674207 1.061270034 0.9735568 0.774390252 0 0.120455968 0.239087065 0.560385952 0.022387899 0.015919928 6.00E-09 8.221674207 -0.199166548 S(ph)PCGLTEQYLHK ddPTM_HeLa_CUDC101_4h_R1 2 SPCGLTEQYLHK 12 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 S(1)PCGLTEQYLHK;S(0.998)PCGLT(0.002)EQYLHK ; 147.51 0.00052834 17965700 7417.3 7542.6 7249.2 7890.4 8734.4 8071.9 7204.7 7129.7 7589.1 8020 TRUE FALSE FALSE 6547.855338 7774.978566 7641.11368 8212.204617 8090.080713 7917.941956 7482.587692 7941.316229 7276.274086 7972.296683 0.821326099 0.975249527 0.958458269 1.0300927 1.014774165 0.993182049 0.938573662 0.996113986 0.912694845 1 12.96077968 -7.028225501 24.37765581 0.914713663 0.987663141 0.354337099 0.046796286 639.3369694 552178.1701 0.011562123 0.014179302 9.37E-08 7.028225501 0.072949478 LS(ph)S(ph)EDEEEDEAEDDQSEASGKK ddPTM_HeLa_CUDC101_4h_R1 1 LSSEDEEEDEAEDDQSEASGKK 22 1 Q8NEJ9-2;Q8NEJ9;G3V4G1 Q8NEJ9-2 NGDN Neuroguidin 2 0 LS(1)S(1)EDEEEDEAEDDQSEASGKK 72.654 0.0014827 5874700 1903.7 1387.5 1102 1324.9 1399.2 1178.7 1253.1 1474.7 1555.2 1520 TRUE FALSE FALSE 1680.551172 1430.24723 1161.577453 1378.935149 1295.983804 1156.218261 1301.432487 1642.573887 1491.093998 1510.958972 1.112241432 0.94658244 0.768768361 0.912622496 0.857722696 0.76522148 0.861328805 1.087106875 0.986852737 1 10.56124877 -7.027766675 6.227781581 1.052179424 0.869445777 0.374677131 0.090054774 0.119349044 15.71774919 0.01490784 0.018674702 9.38E-08 7.027766675 -0.182733647 AS(ph)PAPGSGHPEGPGAHLDMNSLDR ddPTM_HeLa_CUDC101_4h_R1 2 ASPAPGSGHPEGPGAHLDMNSLDR 24 0 O94826 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 1 0 AS(0.96)PAPGS(0.04)GHPEGPGAHLDMNSLDR;AS(0.993)PAPGS(0.007)GHPEGPGAHLDMNSLDR ; 129.2 7.62E-09 106292000 2362.9 1486.52 1145.38 1214.23 1856.03 1699.62 1603.45 1113.68 1471.08 1549.92 TRUE FALSE FALSE 2085.924444 1532.317919 1207.302707 1263.751548 1719.114365 1667.20258 1665.295604 1240.45683 1410.44146 1540.701007 1.353880107 0.994558913 0.7836061 0.820244513 1.115800118 1.082106504 1.080868771 0.805124955 0.915454364 1 10.5893712 -7.027057549 24.02506091 1.167484257 0.955851577 0.078764729 0.159449958 470.4442722 417718.3281 0.028912608 0.035473218 9.40E-08 7.027057549 -0.21163268 SST(ph)PEEVK ddPTM_HeLa_CUDC101_4h_R1 2 SSTPEEVK 8 0 P23528;G3V1A4;E9PP50;E9PK25;E9PQB7;E9PLJ3;E9PS23 P23528 CFL1 Cofilin-1 1 0 S(0.023)S(0.023)T(0.955)PEEVK;S(0.039)S(0.063)T(0.898)PEEVK ; 128.35 0.028399 159879000 19394.2 7247.4 20058 19486.2 11531.5 10635.4 11684 4647.1 20221 24403 TRUE FALSE FALSE 17120.84128 7470.683804 21142.39615 20280.93146 10680.84422 10432.54746 12134.65579 5176.10708 19387.48182 24257.84987 0.705785606 0.307969744 0.871569256 0.836056434 0.440304655 0.430068927 0.500236248 0.213378643 0.799225072 1 14.56616406 -7.025882243 0.129097996 1.330657594 4.25E-11 0.464961635 0.184808399 3.805983105 0.385149344 1.658420258 2.009049241 9.42E-08 7.025882243 -1.330657594 S(ph)SPPLRTPDVLESSGPAVR ddPTM_HeLa_CUDC101_4h_R1 2 SSPPLRTPDVLESSGPAVR 19 1 A0A0A6YYC0;E9PJN1;O75676-2;O75676 A0A0A6YYC0 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 0 S(0.667)S(0.32)PPLRT(0.013)PDVLESSGPAVR;S(0.495)S(0.495)PPLRT(0.009)PDVLESSGPAVR ; 93.062 0.0015413 157875000 1032.37 1141.69 1006.09 987.83 1333.94 1282.29 1152.3 1030 1161.89 863.82 TRUE FALSE FALSE 911.3571536 1176.864116 1060.482269 1028.117977 1235.537904 1257.832455 1196.744597 1147.251037 1113.996402 858.6819602 1.061344241 1.370547153 1.235011701 1.197321039 1.438877211 1.464840899 1.393699475 1.336060485 1.297332952 1 9.745980073 -7.025444179 0.671459271 1.003403377 1.403098999 0.302314762 0.123622284 0.211817963 0.199795694 0.022173247 0.031218424 9.43E-08 7.025444179 0.399695622 S(ph)PVPSAFSDQSR ddPTM_HeLa_CUDC101_4h_R1 4 SPVPSAFSDQSR 12 0 Q9UQ35;Q9UQ35-2;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PVPSAFSDQSR;S(1)PVPSAFSDQSR;S(0.999)PVPS(0.001)AFSDQSR;S(1)PVPSAFSDQSR ;;; 157.33 0.00016687 759610000 3348.27 2456.28 2717.75 2614.02 2501.19 2791.66 2430.76 2005.1 3164.45 3291.49 TRUE FALSE FALSE 2955.790866 2531.955075 2864.679786 2720.631034 2316.682197 2738.413737 2524.515227 2233.352479 3034.010032 3271.912071 0.903383343 0.773845696 0.87553691 0.831511048 0.708051484 0.836946005 0.771571843 0.682583282 0.927289599 1 11.67591826 -7.024247363 0.204215899 1.068673746 0.649025706 0.67109204 0.054114477 0.95947528 0.162716637 0.120201265 0.158671212 9.46E-08 7.024247363 -0.41964804 S(ph)FDYNYR ddPTM_HeLa_CUDC101_4h_R1 3 SFDYNYR 7 0 O75494-6;O75494-3;Q5JRI1;O75494-5;O75494-4;O75494-2;O75494 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.992)FDYNY(0.007)R;S(0.893)FDY(0.004)NY(0.103)R;S(0.989)FDY(0.006)NY(0.006)R ;; 119.68 0.01197 1101633000 14487.6 10009.9 9685.9 10493.4 10044.2 10175.5 9777.8 8262.9 10875.5 10233.2 TRUE FALSE FALSE 12789.38549 10318.29315 10209.54905 10921.36621 9303.259377 9981.419291 10154.93302 9203.515136 10427.20729 10172.33247 1.257271675 1.014348792 1.003658608 1.073634414 0.914565013 0.981232114 0.998289532 0.904759568 1.025055691 1 13.3123629 -7.023737559 23.15539952 1.122243146 0.983922723 0.276649809 0.078962096 284.2130157 277242.5534 0.017062063 0.02097934 9.47E-08 7.023737559 -0.138320423 AASSSSSSSSSSSS(ph)DDSEEEKAAATPK ddPTM_HeLa_CUDC101_4h_R1 1 AASSSSSSSSSSSSDDSEEEKAAATPK 27 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2;S4R3C2;S4R349 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 AASSS(0.001)S(0.003)S(0.013)S(0.011)S(0.043)S(0.173)S(0.173)S(0.146)S(0.146)S(0.206)DDS(0.085)EEEKAAATPK 83.059 7.47E-06 6262100 723.04 798.71 808.87 819.5 995.91 917.65 805.35 639.09 667.15 828.42 TRUE FALSE FALSE 638.2863473 823.3173084 852.5999589 852.9227522 922.4437034 900.1473552 836.4126193 711.8414223 639.6497946 823.492521 0.775096714 0.999787232 1.035346329 1.03573831 1.12016039 1.09308504 1.015689394 0.864417592 0.776752403 1 9.685611737 -7.023597015 21.3840223 0.893461215 1.033046642 0.422298409 0.088839514 115.9310066 105058.7751 0.017181411 0.021145961 9.47E-08 7.023597015 0.139585427 KIYEDGDDDMKR ddPTM_HeLa_CUDC101_4h_R1 1 KIYEDGDDDMKR 12 2 Q9HB71;Q9HB71-3 Q9HB71 CACYBP Calcyclin-binding protein 0 0 60.08 0.038269 13878000 3333.7 3522.3 3703.4 3384.6 4520.5 3768.5 3063.7 4498.9 4030.8 3975.9 FALSE FALSE TRUE 2942.92874 3630.817888 3903.617006 3522.638617 4187.031721 3696.622141 3181.867935 5011.036591 3864.648718 3952.25117 0.744620879 0.918670836 0.987694567 0.891299279 1.059404259 0.935320652 0.805077359 1.267894265 0.977834796 1 11.94845892 -6.931973729 5.218950149 0.877152781 0.977894551 0.063949509 0.131514295 0.370122062 19.23945737 0.022668149 0.029877437 1.17E-07 6.931973729 0.10074177 KK(ac)LDASILEDR ddPTM_HeLa_CUDC101_4h_R1 1 KKLDASILEDR 11 2 J3KMZ8;Q92785 J3KMZ8 DPF2 Zinc finger protein ubi-d4 0 1 K(0.213)K(0.787)LDASILEDR 103.46 0.013194 3255600 3603 3844.1 3988 3896.6 4685.6 4578.7 4692.9 4214.7 2445.3 3631 FALSE TRUE FALSE 3180.661802 3962.532165 4203.603343 4055.520191 4339.952623 4491.368926 4873.906725 4694.484412 2344.503699 3609.402651 0.881215567 1.097835999 1.164625771 1.123598718 1.202401905 1.244352421 1.350336107 1.30062641 0.64955449 1 11.81754438 -6.272538827 0.765138051 0.944389244 1.309911824 0.703097573 0.108940393 0.199069306 0.228892359 0.014380442 0.0343812 5.34E-07 6.272538827 0.36552258 KLS(ph)DDPCPVESK ddPTM_HeLa_CUDC101_4h_R1 1 KLSDDPCPVESK 12 1 O60244 O60244 MED14 Mediator of RNA polymerase II transcription subunit 14 1 0 KLS(0.999)DDPCPVES(0.001)K 79.81 0.0029484 0 1454.9 1021.7 776.62 1208.1 849.84 1285.5 785.31 1128.3 819.08 1051.6 TRUE FALSE FALSE 1284.358827 1053.177366 818.6064263 1257.37154 787.1489963 1260.981229 815.5996698 1256.741111 785.3171757 1045.345036 1.228645837 1.007492578 0.78309687 1.202829206 0.753004002 1.206282314 0.780220541 1.202226124 0.751251643 1 10.0297635 -7.02346764 23.96742196 1.108503108 0.979829289 0 0.208399401 748.7413809 764686.4002 0.027558507 0.03388246 9.47E-08 7.02346764 -0.128673819 EASLADNNT(ph)DVR ddPTM_HeLa_CUDC101_4h_R1 1 EASLADNNTDVR 12 0 Q9GZX6 Q9GZX6 IL22 Interleukin-22 1 0 EASLADNNT(1)DVR 67.08 0.026783 7262200 2001.6 1568.7 1590.1 1407.1 3239.2 2264.1 2396.4 2669.2 2198.3 429.79 TRUE FALSE FALSE 1766.975482 1617.029788 1676.065616 1464.48762 3000.250669 2220.916065 2488.829951 2973.050939 2107.685144 427.23359 4.135853369 3.784884489 3.923066105 3.4278382 7.022506516 5.198364822 5.825454761 6.95884174 4.933332006 1 8.738881269 -7.023455921 0.189236687 6.37E-15 8.115909508 0.352401866 1.37209516 1.088867203 0.168792712 2.68315266 3.491833945 9.47E-08 7.023455921 8.115909508 S(ph)YSPSFQR ddPTM_HeLa_CUDC101_4h_R1 1 SYSPSFQR 8 0 Q9P227;Q9P227-2 Q9P227 ARHGAP23 Rho GTPase-activating protein 23 1 0 S(0.616)YS(0.369)PS(0.015)FQR 123.21 0.0068553 50691000 5325.1 3909.4 3743.1 3631.9 4254.5 3949.7 3858.6 3669.1 3754.7 4044.5 TRUE FALSE FALSE 4700.89985 4029.84398 3945.463308 3780.02458 3940.654011 3874.366053 4007.427495 4086.775513 3599.929677 4020.443134 1.169249183 1.002338261 0.981350358 0.940200981 0.980154147 0.963666423 0.996762636 1.016498773 0.895406192 1 11.97313881 -7.023381668 22.52413475 1.080232217 0.97918217 0 0.07210368 177.4280408 170920.7643 0.010671126 0.013129146 9.48E-08 7.023381668 -0.101050047 TGGPAYGPSSDVS(ph)TASETESEKREEPNR ddPTM_HeLa_CUDC101_4h_R1 1 TGGPAYGPSSDVSTASETESEKREEPNR 28 2 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 TGGPAY(0.003)GPS(0.027)S(0.027)DVS(0.623)T(0.142)AS(0.173)ET(0.004)ES(0.001)EKREEPNR 71.091 7.28E-05 19107000 713.37 849.56 917.99 853.86 1192.1 965.85 671.31 728.29 689.3 901.15 TRUE FALSE FALSE 629.74985 875.7339366 967.6193162 888.6841015 1104.161158 947.4280205 697.2026516 811.1955898 660.8867622 895.7899197 0.703010646 0.977610841 1.080185538 0.992067539 1.232611725 1.057645325 0.778310446 0.905564544 0.737769814 1 9.807016621 -7.023096151 24.02635152 0.858731634 1.010732795 0.280248325 0.134358167 623.602905 648718.0318 0.026307751 0.032355984 9.48E-08 7.023096151 0.152001161 GSSGENNNPGS(ph)PTVSNFR ddPTM_HeLa_CUDC101_4h_R1 2 GSSGENNNPGSPTVSNFR 18 0 D6RDZ7;D6RD37;D6RAX8;D6RBL1;D6RDZ9;D6RCK9;Q99576-3;D6R8Z7 D6RDZ7 TSC22D3 1 0 GSSGENNNPGS(1)PTVSNFR;GSSGENNNPGS(1)PTVSNFR ; 287.31 3.99E-104 47218000 3880.2 4141.1 4376.4 4033.5 4432 4025.1 4205.3 4608 4012.4 4444.2 TRUE FALSE FALSE 3425.368838 4268.682383 4613.001422 4198.003564 4105.06019 3948.327924 4367.49983 5132.556094 3847.007174 4417.765701 0.775362269 0.966253684 1.044193317 0.950254914 0.929216366 0.893738643 0.988621879 1.161799073 0.870803803 1 12.10910119 -7.023015094 24.34807433 0.89270459 0.986489652 0.252644642 0.085454524 803.4513679 849984.4315 0.017696582 0.021762463 9.48E-08 7.023015094 0.093785062 KKEESTAASETTEGSQGDSK(ac)NAK ddPTM_HeLa_CUDC101_4h_R1 2 KKEESTAASETTEGSQGDSKNAK 23 3 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 0 1 ; KKEESTAASETTEGSQGDSK(1)NAK;K(0.001)K(0.001)EESTAASETTEGSQGDSK(0.998)NAK 64.538 0.0039202 104322000 30434.9 21308.8 22430.8 21385.4 21765.8 20643.1 18078 12261.8 38738.6 35812.5 FALSE TRUE FALSE 26867.36716 21965.29887 23643.4769 22257.58905 20160.1803 20249.36726 18775.27452 13657.63375 37141.77851 35599.48566 0.754712229 0.617011692 0.664152205 0.625222209 0.566305381 0.568810669 0.527402971 0.38364694 1.043323459 1 15.11956878 -8.069094959 0.097129981 1.580387231 5.53E-11 0.957805809 0.040218937 2.016736258 0.114578137 1.02957233 0.765449924 8.53E-09 8.069094959 -1.580387231 KQHYLSS(ph)EDEPDDNPDVLDSR ddPTM_HeLa_CUDC101_4h_R1 1 KQHYLSSEDEPDDNPDVLDSR 21 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 KQHY(0.157)LS(0.157)S(0.686)EDEPDDNPDVLDSR 80.733 0.00075142 8408800 1931.6 2051.6 2238.1 2140.3 2268.2 1942.2 2244.4 1894.7 1784 2121.2 TRUE FALSE FALSE 1705.180776 2114.807364 2359.098456 2227.590685 2100.879405 1905.155771 2330.96726 2110.384989 1710.462765 2108.583008 0.808685629 1.002951914 1.118807487 1.056439645 0.99634655 0.903524198 1.105466207 1.000854593 0.811190623 1 11.0420581 -7.022255902 23.96814221 0.909455074 1.030327168 0.432365259 0.077632196 429.8007665 462866.6498 0.014821885 0.018244083 9.50E-08 7.022255902 0.120872094 NVSS(ph)YEK ddPTM_HeLa_CUDC101_4h_R1 1 NVSSYEK 7 0 A0A0U1RR22;Q9UNF0 A0A0U1RR22 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 1 0 NVS(0.007)S(0.993)YEK 104.05 0.017219 16719000 2864.2 2779.7 2720.3 3173.5 3097.3 2668 3330.1 1878.3 2668.5 2974.9 TRUE FALSE FALSE 2528.462818 2865.339262 2867.367646 3302.929047 2868.81835 2617.112345 3458.543073 2092.11808 2558.503301 2957.205162 0.855017721 0.968934891 0.969620804 1.116908995 0.970111369 0.88499519 1.169530987 0.707464638 0.865176124 1 11.53001862 -7.021967322 23.45533316 0.93050668 0.980666612 0.037158239 0.123714788 1050.016066 1121141.281 0.019470349 0.023979914 9.51E-08 7.021967322 0.050159932 RSS(ph)LPVSNER ddPTM_HeLa_CUDC101_4h_R1 1 RSSLPVSNER 10 1 Q5THJ4-2;Q5THJ4;H3BLS7;A0A2R8YD87 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 RS(0.051)S(0.949)LPVSNER 67.952 0.037049 3801300 912.41 982.06 1165.6 816.46 1283.9 830.47 971.84 1115.1 1103.7 996.27 TRUE FALSE FALSE 805.4586829 1012.316105 1228.615862 849.7587678 1189.189255 814.6301684 1009.324194 1242.038477 1058.205019 990.3441417 0.813311907 1.02218619 1.24059487 0.858043918 1.200783854 0.822572815 1.019165108 1.254148355 1.068522521 1 9.951786134 -7.021396403 23.81716947 0.912152629 1.056219711 0.059488012 0.152067252 536.3646439 597047.9308 0.023781707 0.029301316 9.52E-08 7.021396403 0.144067083 S(ph)LELNGAVEPSEGAPR ddPTM_HeLa_CUDC101_4h_R1 2 SLELNGAVEPSEGAPR 16 0 R4GN16;F5GYK2;Q9NRL3-2;Q9NRL3;Q9NRL3-3;M0R2A7;M0QYS2;M0R0P4 R4GN16 STRN4 Striatin-4 1 0 S(1)LELNGAVEPSEGAPR;S(0.993)LELNGAVEPS(0.007)EGAPR ; 199.91 1.91E-16 21602400 1733.67 1365.01 1154.8 1480.04 1504.84 1390.37 1341.5 1265.06 1180.88 1435.24 TRUE FALSE FALSE 1530.451831 1407.06434 1217.231981 1540.402428 1393.830951 1363.851009 1393.242104 1409.069317 1132.203627 1426.703129 1.072719194 0.986234846 0.853178182 1.079693734 0.976959343 0.955945902 0.97654661 0.987640167 0.793580391 1 10.47846945 -7.02107854 24.41110345 1.034083699 0.971602112 0 0.093144915 643.9371436 745744.2043 0.009115654 0.011231469 9.53E-08 7.02107854 -0.062481587 VLT(ph)PELYAELR ddPTM_HeLa_CUDC101_4h_R1 1 VLTPELYAELR 11 0 P12277;G3V4N7;G3V461 P12277 CKB Creatine kinase B-type 1 0 VLT(1)PELYAELR 109.16 0.034916 11148000 2429.2 1696.7 1624.9 1447.8 2008 1908.8 1623.4 1457.9 1888 1602.6 TRUE FALSE FALSE 2144.452858 1748.973316 1712.747009 1506.847542 1859.87384 1872.39282 1686.015082 1623.861443 1810.175841 1593.067664 1.346115364 1.097865053 1.075125086 0.945877929 1.1674795 1.175337911 1.058344928 1.019329863 1.136283086 1 10.63759183 -7.02089535 24.60874067 1.166524775 1.07685481 0.131411064 0.099809452 1274.207042 1500649.283 0.023433959 0.028883052 9.53E-08 7.02089535 -0.089669966 SFEVEEVETPNST(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 SFEVEEVETPNSTPPR 16 0 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 SFEVEEVET(0.049)PNS(0.021)T(0.93)PPR 268.5 6.52E-85 29027000 2921.3 2608.3 2584.6 2551.4 3103.3 2816.5 2826.1 2132.4 2968 2646.7 TRUE FALSE FALSE 2578.869642 2688.658631 2724.331294 2655.45712 2874.375742 2762.779955 2935.103624 2375.143797 2845.657784 2630.957311 0.980202009 1.021931683 1.035490497 1.009312127 1.092520859 1.050104441 1.115602907 0.902767896 1.081605457 1 11.36137212 -7.020618557 2.765349534 0.990676048 1.0403947 0 0.060754659 0.360652916 5.543203674 0.008376991 0.010800128 9.54E-08 7.020618557 0.049718652 NSS(ph)SPVAATPASVNTTPDKPK ddPTM_HeLa_CUDC101_4h_R1 2 NSSSPVAATPASVNTTPDKPK 21 1 Q14469 Q14469 HES1 Transcription factor HES-1 1 0 NS(0.122)S(0.44)S(0.426)PVAAT(0.012)PASVNTTPDKPK;NS(0.142)S(0.429)S(0.429)PVAATPASVNTTPDKPK ; 155.61 4.49E-10 0 2753.3 2831.2 3048.9 3850.8 3632.1 2958.8 3156.9 3181.1 2427.2 2348 TRUE FALSE FALSE 2430.562348 2918.425916 3213.732756 4007.852269 3364.167219 2902.36582 3278.66269 3543.223566 2327.149789 2334.033992 1.041356877 1.250378498 1.37690058 1.717135347 1.441353139 1.243497665 1.404719341 1.518068536 0.997050513 1 11.18860986 -7.020520721 2.06897641 1.016752911 1.453071459 0.757267997 0.111560569 0.114495054 0.968552823 0.020324996 0.02637212 9.54E-08 7.020520721 0.436318548 QTPTHPLT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 QTPTHPLTPR 10 0 Q13415 Q13415 ORC1 Origin recognition complex subunit 1 1 0 QTPT(0.012)HPLT(0.988)PR 92.939 0.0018349 0 3868.3 3047.1 2717.7 2807.9 2635.4 2516.5 2424 1989.7 3679.5 4132.8 TRUE FALSE FALSE 3414.863738 3140.977539 2864.627083 2922.418299 2440.991792 2468.501955 2517.494492 2216.199405 3527.829453 4108.217922 0.831227506 0.764559621 0.697291901 0.711359123 0.594172909 0.600869283 0.612794779 0.539455172 0.858725004 1 12.004297 -7.020360614 0.294036272 1.035607403 0.49508455 0.877413218 0.047839684 0.164318148 0.043824313 0.024104033 0.034089996 9.54E-08 7.020360614 -0.540522853 EEPDSENIPQELLSNLGHPES(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 4 EEPDSENIPQELLSNLGHPESPPR 24 0 D6RF40;D6RAG5;D6R9R7;A0A0A0MTL5;Q13309-2;Q13309 D6RF40 SKP2 S-phase kinase-associated protein 2 1 0 EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLS(0.038)NLGHPES(0.962)PPR;EEPDSENIPQELLSNLGHPES(1)PPR;EEPDSENIPQELLS(0.407)NLGHPES(0.593)PPR ;;; 161.46 2.63E-09 84070000 14763.8 8458.5 7361.41 7321.87 9698.6 9136.9 7754.43 6083.04 11124.1 8440.1 TRUE FALSE FALSE 13033.20974 8719.096359 7759.390092 7620.487506 8983.1536 8962.628856 8053.520963 6775.508685 10665.55989 8389.89791 1.553440803 1.03923748 0.924849167 0.908293234 1.070710716 1.068264352 0.959906908 0.807579396 1.27123834 1 13.03443754 -7.020337815 23.9409086 1.263188754 0.966253013 0.49626499 0.143243952 412.3919384 485451.9286 0.035435166 0.043717024 9.54E-08 7.020337815 -0.29693574 KKQDPPVTHDLR ddPTM_HeLa_CUDC101_4h_R1 2 KKQDPPVTHDLR 12 2 P25685;M0R128;A0A1B0GX60;M0R1D6;M0QZD0;M0QYT3;M0QXK0;M0R080;P25685-2 P25685 DNAJB1 DnaJ homolog subfamily B member 1 0 0 ; ; 40.516 0.039936 19141200 3430.9 3693.9 3477.5 4157.2 4765.7 4234.9 3775 3769.6 3646.4 4141.1 FALSE FALSE TRUE 3028.735103 3807.704681 3665.504169 4326.748585 4414.143806 4154.126338 3920.603015 4198.716027 3496.093849 4116.468553 0.735760535 0.92499302 0.890448724 1.051082628 1.072313258 1.00914808 0.952419037 1.019980105 0.849294439 1 12.00719149 -6.314979157 6.191178494 0.877237908 1.019296137 0.515146192 0.068327111 0.208714363 18.41486565 0.015828344 0.024395761 4.84E-07 6.314979157 0.142058229 NFSINS(ph)VASTYSEFAR ddPTM_HeLa_CUDC101_4h_R1 1 NFSINSVASTYSEFAR 16 0 O43663-2;O43663-4 O43663-2 PRC1 Protein regulator of cytokinesis 1 1 0 NFS(0.47)INS(0.478)VAS(0.023)T(0.007)YS(0.023)EFAR 95.822 0.005867 4909900 950.28 715.59 583.09 729.92 589.72 703.56 582.99 856.77 691.81 777.24 TRUE FALSE FALSE 838.8896189 737.6364797 614.6136092 759.6892926 546.2175305 690.1407652 605.4761196 954.3012336 663.293299 772.6169419 1.085776888 0.954724702 0.795495899 0.983267712 0.706970687 0.893250883 0.783669224 1.235154424 0.858502141 1 9.593609503 -7.019924717 6.757618799 1.039685687 0.88784576 0.013707564 0.147785838 0.187410115 36.92377167 0.02089244 0.026281715 9.55E-08 7.019924717 -0.151839927 KKVEEEDEEEEEEEEEEEEEEDE ddPTM_HeLa_CUDC101_4h_R1 4 KKVEEEDEEEEEEEEEEEEEEDE 23 2 O15347 O15347 HMGB3 High mobility group protein B3 0 0 ;;; ;;; 93.381 0.0010711 563292000 13801.3 12135.9 11527.5 10998.6 13533.7 12192.4 12731.8 12532.5 12427.2 13583.4 FALSE FALSE TRUE 12183.53254 12509.79269 12150.71152 11447.17045 12535.34591 11959.85028 13222.86979 13959.14914 11914.94556 13502.60533 0.902309757 0.926472513 0.89987904 0.847774942 0.928364979 0.885743898 0.979282847 1.033811535 0.882418264 1 13.72095018 -4.506179034 4.939641788 0.933937072 1.024066209 0.376933104 0.043777692 0.188545824 12.59567386 0.007416263 0.037601172 3.12E-05 4.506179034 0.090129137 KLAVNMVPFPR ddPTM_HeLa_CUDC101_4h_R1 2 KLAVNMVPFPR 11 1 Q5JP53;P07437;Q5ST81;A0A075B736;Q5SQY0;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;P68371;Q3ZCM7;Q9BVA1;Q13885;P04350;K7ESM5;Q9BUF5;A0A0B4J269;Q13509;Q13509-2;Q9H4B7 Q5JP53;P68371;Q9BVA1;P04350;A0A0B4J269;Q9H4B7 TUBB;TUBB8;TUBB4B;TUBB2B;TUBB2A;TUBB4A;TUBB6;TUBB3;TUBB1 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-6 chain;Tubulin beta-3 chain;Tubulin beta-1 chain 0 0 ; ; 110.38 0.0025345 2973500 6599.6 2641.1 966.97 3045.7 2327.8 2346.5 2202.3 1477.47 742.36 99.573 FALSE FALSE TRUE 5826.004892 2722.469161 1019.247323 3169.916811 2156.082832 2301.744422 2287.243449 1645.659213 711.7596066 98.98073537 58.85998796 27.50504076 10.29743131 32.02559366 21.78285324 23.2544688 23.10796581 16.62605563 7.190890267 1 6.629075855 -9.736013752 1.671686669 1.020672043 31.71747969 0.262117993 13.07880771 0.361925921 1.830386208 11.97662989 2.609132144 1.84E-10 9.736013752 30.69680765 AVSPAAAQPPS(ph)PSSAEKPGDEPGRPR ddPTM_HeLa_CUDC101_4h_R1 1 AVSPAAAQPPSPSSAEKPGDEPGRPR 26 2 B9ZVR7;Q15772-1;Q15772 B9ZVR7 SPEG Striated muscle preferentially expressed protein kinase 1 0 AVSPAAAQPPS(0.877)PS(0.088)S(0.034)AEKPGDEPGRPR 80.117 5.89E-05 0 806.89 807.46 844.42 868.5 969.85 893.22 811.5 778.37 954.54 821.35 TRUE FALSE FALSE 712.3075774 832.3368855 890.0718994 903.921184 898.3060977 876.1833167 842.7998268 866.9764945 915.1934572 816.4645737 0.872429252 1.019440295 1.090153729 1.107116234 1.100238916 1.073143092 1.032255231 1.061866641 1.120922434 1 9.673246479 -7.018996333 5.029208807 0.939720463 1.076490898 0.070088371 0.067042565 0.093892049 6.660516535 0.008525023 0.010811031 9.57E-08 7.018996333 0.136770434 STPES(ph)GDSDKESVGSSSTSNEGGR ddPTM_HeLa_CUDC101_4h_R1 2 STPESGDSDKESVGSSSTSNEGGR 24 1 Q6GQQ9-2;Q6GQQ9 Q6GQQ9-2 OTUD7B OTU domain-containing protein 7B 1 0 S(0.002)T(0.002)PES(0.498)GDS(0.337)DKES(0.141)VGS(0.004)S(0.004)S(0.005)T(0.005)SNEGGR;S(0.025)T(0.025)PES(0.49)GDS(0.444)DKES(0.011)VGS(0.001)S(0.001)S(0.002)TSNEGGR ; 69.782 0.00045214 110972300 3257.5 2926.1 3496.8 3304.9 2891.8 2663.5 2342.1 2048.03 3377.4 3912.3 TRUE FALSE FALSE 2875.660788 3016.249673 3685.847585 3439.688107 2678.477675 2612.698175 2432.435582 2281.169457 3238.182142 3889.029466 0.739428902 0.775579023 0.947755119 0.884459256 0.688726506 0.671812389 0.625460826 0.586565228 0.832645309 1 11.92519445 -7.018688242 0.05541931 1.582229787 1.46E-25 0.51157882 0.091921941 20.39685005 0.850664216 11.42883105 12.48887811 9.58E-08 7.018688242 -1.582229787 AAPPPPALT(ph)PDSQT(ph)VDSSCKTPEVSFLPEEATEEAGVR ddPTM_HeLa_CUDC101_4h_R1 1 AAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVR 38 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 AAPPPPALT(0.76)PDS(0.182)QT(0.303)VDS(0.25)S(0.25)CKT(0.25)PEVS(0.005)FLPEEATEEAGVR 57.851 0.00014094 7869100 969.53 675.5 517.7 643.81 851.1 652.05 795.23 466.43 710.06 683.16 TRUE FALSE FALSE 855.8831631 696.3113543 545.688428 670.0673546 788.3160486 639.6132326 825.9022875 519.5265058 680.7910263 679.0965339 1.260326213 1.025349592 0.803550601 0.98670413 1.160830617 0.941859074 1.216178034 0.765026001 1.002495216 1 9.407472859 -7.018462519 24.0506485 1.123979519 0.989871567 0.080586355 0.147223522 678.2393665 883524.9882 0.025329252 0.031346044 9.58E-08 7.018462519 -0.134107952 KLDEAVAEAHLGK ddPTM_HeLa_CUDC101_4h_R1 2 KLDEAVAEAHLGK 13 1 P23526-2;P23526 P23526-2 AHCY Adenosylhomocysteinase 0 0 ; ; 96.371 0.0082537 33011000 20835.1 18162.4 18011 18292.6 19586.2 18941.2 17645.7 17335.9 18453.2 19063.6 FALSE FALSE TRUE 18392.84116 18721.96202 18984.72914 19038.6513 18141.36505 18579.92817 18326.30056 19309.34878 17692.55129 18950.20886 0.970587781 0.987955444 1.001821631 1.004667096 0.95731742 0.980460337 0.967076442 1.018951766 0.933633577 1 14.20992613 -9.672779834 1.54199815 0.999968586 0.983148667 0 0.027395365 0.74076767 3.18062573 0.012545994 0.00282719 2.12E-10 9.672779834 -0.01681992 KLDEEALLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 KLDEEALLKK 10 2 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 0 1 KLDEEALLK(1)K 134.98 1.74E-06 0 873.01 952.07 934.21 796.11 1254.3 1122.6 883.52 562.35 929.94 1149.9 FALSE TRUE FALSE 770.6770912 981.4021482 984.7162184 828.5788069 1161.772788 1101.188275 917.5976624 626.3656509 891.6074796 1143.060344 0.674222578 0.858574225 0.861473521 0.724877572 1.016370478 0.963368453 0.802755224 0.547972515 0.780017857 1 10.15868585 -9.605869593 1.420873674 0.999526547 0.79873861 0 0.144943387 0.502950738 1.829264899 0.095004979 0.022129844 2.48E-10 9.605869593 -0.200787937 KLDEK(ac)ENLSAK ddPTM_HeLa_CUDC101_4h_R1 2 KLDEKENLSAK 11 2 U3KQ93;Q9UBT2-2;Q9UBT2 U3KQ93 UBA2 SUMO-activating enzyme subunit 2 0 1 ; KLDEK(1)ENLSAK;KLDEK(1)ENLSAK 148.13 0.00019894 3159900 2918.2 2322.1 2125.4 2470.3 3173.7 3283.1 3104.3 3238.1 3045.7 2679.5 FALSE TRUE FALSE 2576.13302 2393.641149 2240.305553 2571.049512 2939.582474 3220.480338 3224.033891 3606.712215 2920.154957 2663.562215 0.967175839 0.898661625 0.841093758 0.965267302 1.103628238 1.20908771 1.210421845 1.354093475 1.096334428 1 11.37914126 -5.344281296 1.636906767 0.963729116 1.281277812 0.783608577 0.070471097 0.121510923 0.618756452 0.00963911 0.03150708 4.53E-06 5.344281296 0.317548696 KLDELYGTWR ddPTM_HeLa_CUDC101_4h_R1 2 KLDELYGTWR 10 1 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 0 ; ; 95.618 0.021966 57284000 13658.6 8822.5 6006.7 9529.3 8462.2 8651.4 7782.7 7860 7276.8 6041 FALSE FALSE TRUE 12057.55961 9094.310768 6331.440371 9917.946043 7837.960365 8486.388959 8082.881346 8754.750629 6976.847224 6005.067863 2.007897311 1.514439299 1.054349512 1.651595997 1.305224278 1.413204505 1.346009992 1.457893704 1.161826541 1 12.55196483 FVYS(ph)LLWPR ddPTM_HeLa_CUDC101_4h_R1 3 FVYSLLWPR 9 0 C9JFR9;Q9UNU6 C9JFR9 CYP8B1 7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase 1 0 FVY(0.342)S(0.658)LLWPR;FVY(0.357)S(0.643)LLWPR;FVY(0.357)S(0.643)LLWPR ;; 87.754 0.03184 127015000 7053.5 5629.2 5437.7 5760 5752.2 5709.3 5055.3 6301 5315.4 5614.3 TRUE FALSE FALSE 6226.699422 5802.62898 5731.67851 5994.917697 5327.871666 5600.404615 5250.284614 7018.28037 5096.296962 5580.905894 1.115714821 1.03972887 1.027015796 1.07418362 0.954660725 1.003493827 0.940758492 1.25755218 0.913166618 1 12.4462836 -7.018313244 23.98979716 1.055857776 1.033868124 0 0.097281235 2225.430491 2915242.923 0.014335027 0.017728216 9.59E-08 7.018313244 -0.021989652 RQSSGS(ph)ATNVASTPDNR ddPTM_HeLa_CUDC101_4h_R1 3 RQSSGSATNVASTPDNR 17 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 RQS(0.077)S(0.077)GS(0.838)AT(0.007)NVASTPDNR;RQS(0.005)S(0.04)GS(0.85)AT(0.105)NVASTPDNR;RQS(0.079)S(0.043)GS(0.874)AT(0.003)NVAS(0.001)TPDNR ;; 149.52 0.00015 6192700 2381.95 1854.86 1915.28 1678.89 1840.75 1986.31 1816.44 1813.89 2240.918 2104.13 TRUE FALSE FALSE 2102.741432 1912.006038 2018.82583 1747.362391 1704.96154 1948.424446 1886.500699 2020.375906 2148.546412 2091.614541 1.005319762 0.914129253 0.965199749 0.835413197 0.815141369 0.931540878 0.901935162 0.965940839 1.027219102 1 11.03040129 -7.01705107 1.575993839 1.003330776 0.893315352 0.520464695 0.046635674 0.213636543 1.038893107 0.008448734 0.011064189 9.61E-08 7.01705107 -0.110015424 LTDY(ph)QVT(ph)LQIPAANLS(ph)ANR ddPTM_HeLa_CUDC101_4h_R1 1 LTDYQVTLQIPAANLSANR 19 0 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;H0Y307;Q9H1H9;A0A1B0GUA8 Q9H1H9-3;Q9H1H9 KIF13A Kinesin-like protein KIF13A 3 0 LT(0.11)DY(0.89)QVT(1)LQIPAANLS(1)ANR 63.091 0.0024621 0 170 58.912 0 0 133.03 0 0 144.69 123.71 63.182 TRUE FALSE FALSE 150.0728577 60.72700889 0 0 123.2166419 0 0 161.1609247 118.6106214 62.80619065 2.38945964 0.966895274 0 0 1.961855044 0 0 2.566003814 1.888517998 1 5.972834864 -7.016603025 23.71085809 1.657293995 0.688013614 0.196677683 0.898027649 460.6512551 657858.6706 0.154037791 0.191467321 9.62E-08 7.016603025 -0.96928038 RRS(ph)QSIEQESQEK ddPTM_HeLa_CUDC101_4h_R1 1 RRSQSIEQESQEK 13 2 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 RRS(0.994)QS(0.005)IEQES(0.001)QEK 73.877 0.036808 18085000 2834.6 3044.6 3322.4 2888.6 3959.8 3033.5 2920.8 2964.1 3515.7 3245.7 TRUE FALSE FALSE 2502.332485 3138.400517 3502.018994 3006.409594 3667.693443 2975.641042 3033.456234 3301.521163 3370.781358 3226.394432 0.775581702 0.972726858 1.085428043 0.931817128 1.136777762 0.922280615 0.940200059 1.023285042 1.04475179 1 11.65570711 -7.016411341 24.3299807 0.892978878 1.004524855 0.02504967 0.094258657 595.3435509 882603.1531 0.016641542 0.02068826 9.63E-08 7.016411341 0.111545977 AGSLQLSSMSAGNSS(ph)LRR ddPTM_HeLa_CUDC101_4h_R1 1 AGSLQLSSMSAGNSSLRR 18 1 A0A0B4J1Z0;A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2 A0A0B4J1Z0 COBLL1 Cordon-bleu protein-like 1 1 0 AGSLQLSSMSAGNS(0.415)S(0.585)LRR 76.049 0.0070784 10089000 919.5 950.96 1077.5 973.99 900.47 1142.5 801.51 1015.4 1138.7 1023.8 TRUE FALSE FALSE 811.7176039 980.2579504 1135.752909 1013.713522 834.0441221 1120.708716 832.4245092 1130.989032 1091.762304 1017.710392 0.797591938 0.963199313 1.115988319 0.996072684 0.819529926 1.101205927 0.817938498 1.111307343 1.072763246 1 9.991111359 -7.016019912 24.51591579 0.903154056 0.987502611 0 0.12292057 1006.601096 1540442.184 0.019460665 0.024214008 9.64E-08 7.016019912 0.084348555 TES(ph)FHSYR ddPTM_HeLa_CUDC101_4h_R1 1 TESFHSYR 8 0 Q9Y597;Q9Y597-2;Q9Y597-3 Q9Y597 KCTD3 BTB/POZ domain-containing protein KCTD3 1 0 T(0.001)ES(0.992)FHS(0.007)YR 91.658 0.017408 13568000 6262 4567.6 4482.2 4486.8 4468.7 4529.8 4525.3 4410.4 4578.5 4511.7 TRUE FALSE FALSE 5527.977853 4708.322342 4724.52129 4669.791098 4139.052904 4443.401612 4699.842337 4912.462109 4389.772292 4484.864208 1.232585335 1.04982495 1.053436865 1.041233554 0.922893696 0.990754994 1.047934145 1.095342441 0.978797147 1 12.13084859 -7.015747643 23.33181564 1.111483183 1.023369352 0 0.079287836 415.6234245 615791.2998 0.015828859 0.019731044 9.64E-08 7.015747643 -0.088113831 S(ph)LLDASEEAIKK ddPTM_HeLa_CUDC101_4h_R1 2 SLLDASEEAIKK 12 1 P18206-2;P18206 P18206-2 VCL Vinculin 1 0 S(0.959)LLDAS(0.041)EEAIKK;S(1)LLDASEEAIKK ; 99.834 0.0062716 132497000 8870.2 6839.3 5297.7 6198.4 4663.5 6559.8 6040.6 6889.6 6911 7947 TRUE FALSE FALSE 7830.448602 7050.010726 5584.109687 6451.197544 4319.482896 6434.682744 6273.587965 7673.884215 6626.125655 7899.730891 0.991229791 0.892436821 0.706873407 0.816635102 0.546788613 0.81454455 0.794152111 0.971410839 0.838778655 1 12.94758779 -7.015324046 3.289496094 0.995441108 0.769448914 0.28924406 0.111656802 0.141471873 3.178657986 0.016345307 0.02101988 9.65E-08 7.015324046 -0.225992194 KLEAAEDIAYQLSR ddPTM_HeLa_CUDC101_4h_R1 1 KLEAAEDIAYQLSR 14 1 P35232 P35232 PHB Prohibitin 0 0 83.869 0.022163 18330000 2247.7 2365.2 2403.5 2029.6 2407.2 2397.2 1743.7 2029.7 2551.6 2418.2 FALSE FALSE TRUE 1984.228013 2438.069009 2533.44048 2112.375861 2229.625652 2351.477404 1810.955093 2260.752844 2446.421968 2403.816439 0.825449057 1.014249245 1.053924268 0.878759221 0.927535737 0.978226692 0.753366631 0.940484809 1.017724119 1 11.23111102 -4.783697889 24.99990276 0.933761373 0.846925555 0.181835758 0.081629698 313.1933479 351767.2345 0.01241587 0.037288927 1.65E-05 4.783697889 -0.086835818 KLEEEEDGK(ac)LK ddPTM_HeLa_CUDC101_4h_R1 2 KLEEEEDGKLK 11 2 P11387 P11387 TOP1 DNA topoisomerase 1 0 1 ; KLEEEEDGK(1)LK;KLEEEEDGK(1)LK 144.28 0.00021339 4068100 3747.5 3065.4 3352.6 4213.6 3338.4 3995 3754.1 3060.1 1911.17 4665.8 FALSE TRUE FALSE 3308.223731 3159.841341 3533.851697 4385.448821 3092.132883 3918.802031 3898.896895 3408.449415 1832.390764 4638.047614 0.713279381 0.681286956 0.761926567 0.945537689 0.666688473 0.844924925 0.840633219 0.734888836 0.395078041 1 12.17930192 -9.352149312 1.066438667 1.000485691 0.77293089 0 0.204176767 0.326971054 0.663295137 0.055687787 0.014408449 4.44E-10 9.352149312 -0.227554801 KLEEVVNK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 KLEEVVNKK 9 2 Q8WU90 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 0 1 ; KLEEVVNK(1)K;KLEEVVNK(1)K 97.813 0.0050229 0 2858 1340.87 1891.47 1268.31 2741 2419.6 3215.8 1816.66 2963.8 3200 FALSE TRUE FALSE 2522.989572 1382.180615 1993.72859 1320.037164 2538.801891 2373.450161 3339.834483 2023.461231 2841.63091 3180.966258 0.793151944 0.434515963 0.62676823 0.414979933 0.798122861 0.746141257 1.049943386 0.636115277 0.893323185 1 11.63524935 -8.193345525 1.190591779 0.958048448 0.686758005 0.259717806 0.175483185 0.383708375 1.121473423 0.049876907 0.037427787 6.41E-09 8.193345525 -0.271290443 QRS(ph)PIALPVK ddPTM_HeLa_CUDC101_4h_R1 2 QRSPIALPVK 10 1 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 QRS(1)PIALPVK;QRS(1)PIALPVK ; 96.371 0.01134 205378000 16300.4 10585.1 8521.6 11044.7 10331.8 10466.8 10553.4 9317.7 9475.7 10598.6 TRUE FALSE FALSE 14389.69182 10911.21438 8982.303472 11495.15061 9569.643698 10267.16323 10960.44817 10378.3893 9085.107635 10535.55906 1.365821381 1.035655946 0.852570179 1.091081218 0.908318547 0.974524767 1.040329053 0.985081973 0.862328006 1 13.36297925 -7.015271546 24.65090331 1.174222132 0.977424865 0 0.142002708 553.4038276 893289.2073 0.023745242 0.029612175 9.65E-08 7.015271546 -0.196797267 KLENCNYAVELGK(ac)HPAK ddPTM_HeLa_CUDC101_4h_R1 2 KLENCNYAVELGKHPAK 17 2 P13797;P13797-3;A0A0A0MSQ0;P13797-2 P13797 PLS3 Plastin-3 0 1 ; KLENCNYAVELGK(1)HPAK;KLENCNYAVELGK(1)HPAK 102.29 0.0041479 4108700 4472.7 2167.8 2493.6 2095.59 5900 4583.2 5302 4741.1 4304.9 1689.55 FALSE TRUE FALSE 3948.416886 2234.587349 2628.411559 2181.057218 5464.768754 4495.783096 5506.499916 5280.80766 4127.4502 1679.500481 2.350947159 1.33050712 1.564996014 1.29863447 3.253806006 2.676857283 3.278653372 3.144272787 2.457546303 1 10.71381649 -1 0.167233764 1.103370914 10.34142562 0.419446183 0.632051739 35.08996265 0.364926653 0.9625235 81.17347986 0.1 1 9.238054709 NEEPS(ph)EEEIDAPKPK ddPTM_HeLa_CUDC101_4h_R1 5 NEEPSEEEIDAPKPK 15 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK ;;;; 129.77 0.00038666 3379170000 34491.7 32726.7 35668.4 31058.5 34799.3 34426.4 33566.3 29833.6 31546.8 35688.5 TRUE FALSE FALSE 30448.63521 33734.97084 37596.7416 32325.19988 32232.22497 33769.77378 34860.96343 33229.73643 30246.42755 35476.22321 0.858282885 0.950917763 1.059772946 0.91117929 0.908558523 0.951898785 0.982657123 0.93667627 0.852583077 1 15.11456481 -7.015133345 24.85356819 0.931579204 0.959050548 0.104277153 0.056911575 1993.078435 3273240.509 0.010813408 0.013498746 9.66E-08 7.015133345 0.027471344 VIAHS(ph)SIQR ddPTM_HeLa_CUDC101_4h_R1 1 VIAHSSIQR 9 0 F2Z2C8;Q9BVH7 F2Z2C8 ST6GALNAC5 "Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5" 1 0 VIAHS(0.978)S(0.022)IQR 87.754 0.03184 5303600 2423.3 2316.2 2572.6 2433.3 2991.9 2684 2305.5 2316.1 2870.1 2227.4 TRUE FALSE FALSE 2139.244447 2387.559377 2711.682538 2532.540492 2771.193498 2632.807172 2394.423907 2579.755462 2751.793263 2214.151326 0.966169034 1.078318067 1.224705153 1.143797383 1.251582701 1.189081858 1.081418365 1.165121567 1.242820773 1 11.11253811 -7.015124489 3.777006791 0.984601949 1.173920839 0.043770704 0.092759213 0.071888094 2.248655862 0.007530912 0.009648385 9.66E-08 7.015124489 0.189318889 SGT(ph)PPRQGSITSPQANEQSVTPQR ddPTM_HeLa_CUDC101_4h_R1 2 SGTPPRQGSITSPQANEQSVTPQR 24 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.176)GT(0.671)PPRQGS(0.143)IT(0.008)S(0.003)PQANEQSVTPQR;S(0.325)GT(0.539)PPRQGS(0.136)IT(0.001)SPQANEQSVTPQR ; 82.885 9.31E-05 72946000 749.27 896.06 1008.67 956.03 1101.43 974.61 929.51 746.16 996.2 944.25 TRUE FALSE FALSE 661.4417064 923.6665465 1063.201751 995.0210357 1020.179703 956.0209381 965.3615121 831.0998383 955.1362143 938.633559 0.704685764 0.984054467 1.132712272 1.060074005 1.086877508 1.01852414 1.028475386 0.885435887 1.017581574 1 9.874418232 -7.014438997 24.318289 0.859694682 1.039458982 0.198707898 0.102124096 414.7255349 698484.9429 0.020133925 0.025174825 9.67E-08 7.014438997 0.1797643 KLFIGGLSFETTDESLR ddPTM_HeLa_CUDC101_4h_R1 1 KLFIGGLSFETTDESLR 17 1 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8VZ49;F8W646;Q32P51 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 101.67 0.0028729 8724400 725.21 884.46 632.17 507.89 628.72 794.27 637.92 602.48 761.78 937.14 FALSE FALSE TRUE 640.2019831 911.7091643 666.3470224 528.6039495 582.3405782 779.1206231 662.5247881 671.0638879 730.379106 931.5658496 0.68723213 0.978684614 0.715297821 0.567435946 0.625120144 0.836355931 0.7111948 0.720361194 0.784033792 1 9.863513942 -10.06150548 0.423689651 1.188129975 0.712585953 0.113388733 0.125725619 2.640470878 0.387862956 0.606386614 0.032107706 8.68E-11 10.06150548 -0.475544022 HMDPPPAPVQDRS(ph)PSPR ddPTM_HeLa_CUDC101_4h_R1 5 HMDPPPAPVQDRSPSPR 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 HMDPPPAPVQDRS(0.505)PS(0.495)PR;HMDPPPAPVQDRS(0.761)PS(0.239)PR;HMDPPPAPVQDRS(0.77)PS(0.23)PR;HMDPPPAPVQDRS(0.752)PS(0.248)PR;HMDPPPAPVQDRS(0.5)PS(0.5)PR ;;;; 91.789 0.002817 68830000 15995.2 14882 15259.6 14393.4 17838.2 15808.5 14532.5 13074.7 16383.5 15909.9 TRUE FALSE FALSE 14120.2669 15340.49678 16084.58013 14980.42507 16522.31152 15506.9792 15093.02339 14563.071 15708.1652 15815.26721 0.892825061 0.969980246 1.017028667 0.947212897 1.044706441 0.980506937 0.954332494 0.920823582 0.993227935 1 13.94903031 -7.014354663 24.75277592 0.94844293 0.979483365 0 0.043054433 1246.527104 2149475.007 0.008336984 0.01042618 9.67E-08 7.014354663 0.031040435 KLFVGGIKEDTEEHHLR ddPTM_HeLa_CUDC101_4h_R1 2 KLFVGGIKEDTEEHHLR 17 2 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 103.3 0.00068611 66895000 6824 7587.8 8629.1 8153 11878.5 8244.5 9004.5 11553.6 8037.1 6807.1 FALSE FALSE TRUE 6024.101065 7821.571124 9095.615248 8485.51458 11002.24672 8087.249899 9351.806581 12868.81512 7705.807336 6766.611066 0.890268556 1.155906708 1.344190638 1.254027237 1.625961151 1.195169904 1.382051737 1.901810965 1.138798619 1 12.72421775 -6.659094197 1.12361398 0.944908479 1.487396196 0.527057658 0.193732813 0.216309848 0.546888912 0.033201272 0.053599169 2.19E-07 6.659094197 0.542487717 KLFVGGLK ddPTM_HeLa_CUDC101_4h_R1 1 KLFVGGLK 8 1 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 0 95.909 0.011364 0 3935.2 2924.2 2560.5 3087.7 2878.5 3180.8 2237.6 2608.3 2842.8 1565.7 FALSE FALSE TRUE 3473.921821 3014.291136 2698.928375 3213.629752 2666.15879 3120.13154 2323.904982 2905.218329 2725.618581 1556.387147 2.232042219 1.936723226 1.734098345 2.06480101 1.713043439 2.004727131 1.493140692 1.866642458 1.751247167 1 10.60398526 -9.442025169 1.152742794 0.995980914 1.903041607 0.170152128 0.297443257 0.207738773 0.490276477 0.151209879 0.037053625 3.61E-10 9.442025169 0.907060693 S(ph)PIALPVK ddPTM_HeLa_CUDC101_4h_R1 1 SPIALPVK 8 0 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 S(1)PIALPVK 89.029 0.030612 28058000 4267.2 2854.4 2533.9 2894.4 2306.8 3030.2 2627.9 2334.8 2777.7 2850 TRUE FALSE FALSE 3767.005285 2942.340681 2670.890299 3012.446143 2136.63196 2972.403984 2729.258983 2600.584194 2663.20203 2833.048073 1.329665148 1.038577745 0.942762082 1.063323341 0.754181329 1.049189391 0.963364868 0.917945664 0.940048302 1 11.46813937 -7.014303509 9.257818263 1.157200051 0.95334712 0.145553212 0.128073127 0.216409919 126.9883647 0.023071834 0.029073611 9.68E-08 7.014303509 -0.20385293 SNVSSPATPTASSSSS(ph)TTPTRK ddPTM_HeLa_CUDC101_4h_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVSSPATPTAS(0.004)S(0.002)S(0.012)S(0.1)S(0.293)T(0.293)T(0.293)PT(0.002)RK 151.6 1.85E-07 71665000 3780.2 3314.4 2846.4 3058.9 3715.1 2633.4 2615.3 3042.8 3391.4 3649.7 TRUE FALSE FALSE 3337.090686 3416.512735 3000.284994 3183.655164 3441.044475 2583.172283 2716.172997 3389.180053 3251.605057 3627.991422 0.919817689 0.941709155 0.826982384 0.877525549 0.948470951 0.712011684 0.748671284 0.934175321 0.896254891 1 11.82495533 -7.014007723 0.333106458 1.00411416 0.793349665 0.225642589 0.076695364 0.941040492 0.296216308 0.051994094 0.075208541 9.68E-08 7.014007723 -0.210764494 NYQQNYQNS(ph)ESGEK ddPTM_HeLa_CUDC101_4h_R1 4 NYQQNYQNSESGEK 14 0 H0Y449;P67809;C9J5V9 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NYQQNYQNS(1)ESGEK;NYQQNYQNS(0.5)ES(0.5)GEK;NYQQNYQNS(0.5)ES(0.5)GEK;NYQQNYQNS(0.999)ES(0.001)GEK ;;; 278.33 1.93E-86 123766000 14357 10320.5 9475.4 9632.9 9153.8 10042.3 9469 11120.6 11582.2 10464.1 TRUE FALSE FALSE 12674.09422 10638.46237 9987.668786 10025.7713 8478.542411 9850.759859 9834.222502 12386.52415 11104.77681 10401.85907 1.218445101 1.022746252 0.960181129 0.963844178 0.815098758 0.947019162 0.945429316 1.190799075 1.067576165 1 13.34455378 -7.013589837 7.125987023 1.104132313 0.963059393 0.235928355 0.099799282 0.167587959 45.65037842 0.019054685 0.024098219 9.69E-08 7.013589837 -0.141072919 S(ph)SDIVSSVR ddPTM_HeLa_CUDC101_4h_R1 2 SSDIVSSVR 9 0 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 S(0.993)S(0.007)DIVSSVR;S(0.967)S(0.033)DIVSSVR ; 212.28 5.55E-23 100748000 4507.4 3134 2905.8 3491.3 2635.1 3244.2 2805.1 3090.6 3273.8 3074.3 TRUE FALSE FALSE 3979.049405 3230.554825 3062.896338 3633.690305 2440.713923 3182.32229 2913.293647 3442.421411 3138.852578 3056.013927 1.302039029 1.057113908 1.002252087 1.189029367 0.798659293 1.041331082 0.95329855 1.126441663 1.027106765 1 11.5774354 -7.013575749 23.84488876 1.144574118 1.015613326 0.078037667 0.123953058 498.1056943 874889.9381 0.023340419 0.029280512 9.69E-08 7.013575749 -0.128960791 LIIESPSNTS(ph)STEPA ddPTM_HeLa_CUDC101_4h_R1 1 LIIESPSNTSSTEPA 15 0 P38432 P38432 COIL Coilin 1 0 LIIESPS(0.002)NT(0.109)S(0.864)S(0.024)T(0.001)EPA 108.97 0.0027484 3903200 1920.2 1483.1 1108.1 1179.7 1421.5 1313.6 1319.7 1157 1786 1755.9 TRUE FALSE FALSE 1695.117067 1528.792553 1168.007238 1227.813265 1316.638777 1288.545269 1370.601271 1288.708203 1712.380324 1745.455829 0.971160106 0.87587009 0.669170321 0.703434166 0.754323745 0.738228517 0.785239734 0.738321865 0.981050506 1 10.76938813 -7.013226257 3.135611508 0.986069284 0.73431159 0.928508391 0.031579799 0.045476898 0.918819914 0.005705962 0.007352893 9.70E-08 7.013226257 -0.251757695 T(ph)LTPPLRR ddPTM_HeLa_CUDC101_4h_R1 1 TLTPPLRR 8 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 T(0.996)LT(0.004)PPLRR 73.248 0.0032593 0 3445.7 3172.8 3642.2 3104.7 3446.4 3174.1 3283.3 2969.9 3577 3185.5 TRUE FALSE FALSE 3041.800269 3270.550207 3839.108349 3231.323086 3192.165938 3113.559331 3409.937981 3307.981411 3429.554546 3166.552504 0.960603137 1.032842564 1.212393713 1.020454605 1.008088744 0.98326471 1.076861342 1.04466337 1.083056271 1 11.62869729 -7.012814952 24.90365949 0.982202601 1.057128536 0.014651537 0.066942161 617.5041963 1200014.99 0.009968206 0.012537861 9.71E-08 7.012814952 0.074925935 LAAQESS(ph)EAEDMSVPR ddPTM_HeLa_CUDC101_4h_R1 1 LAAQESSEAEDMSVPR 16 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0 A0A0A0MR88 FAM21C;FAM21D WASH complex subunit FAM21C;Putative WASH complex subunit FAM21 1 0 LAAQES(0.049)S(0.951)EAEDMSVPR 248.1 9.32E-56 3521500 1550.5 1437.4 1646 1542.2 1407.5 1504.2 1528.6 1210.4 1458 1462.7 TRUE FALSE FALSE 1368.75274 1481.68459 1734.987739 1605.097582 1303.671529 1475.509891 1587.558614 1348.187043 1397.900623 1453.999795 0.941370655 1.019040439 1.193251708 1.103918712 0.896610531 1.014793741 1.091856147 0.927226433 0.961417345 1 10.50581135 -7.012539099 24.65328186 0.972729265 1.041768451 0.128546577 0.081296959 786.9092622 1547153.216 0.013690809 0.017238788 9.72E-08 7.012539099 0.069039186 T(ph)SPPCSPANLSR ddPTM_HeLa_CUDC101_4h_R1 2 TSPPCSPANLSR 12 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 T(0.979)S(0.021)PPCSPANLSR;T(0.993)S(0.007)PPCSPANLSR ; 154.67 0.0013331 190485000 3199.7 3321.7 3430.3 3439.7 3962.4 3809.8 3448.3 3748.9 3714 3092.7 TRUE FALSE FALSE 2824.636016 3424.03764 3615.752394 3579.985834 3670.101646 3737.134413 3581.302086 4175.659622 3560.907348 3074.304483 0.918788634 1.113760091 1.176120457 1.164486424 1.193799009 1.215603215 1.16491457 1.358245303 1.158280635 1 11.58604434 -7.012443917 2.596091886 0.961692982 1.208409303 0.448907107 0.083959745 0.089135311 1.204303129 0.009959279 0.012896437 9.72E-08 7.012443917 0.246716321 SVVS(ph)FDK ddPTM_HeLa_CUDC101_4h_R1 2 SVVSFDK 7 0 Q15424-2;Q15424;Q15424-4;Q15424-3 Q15424-2 SAFB Scaffold attachment factor B1 1 0 S(0.353)VVS(0.647)FDK;S(0.001)VVS(0.999)FDK ; 122.33 0.011669 205520000 19311.6 15000.8 13672.8 14707.4 15560.3 14851.7 15828.6 12123.4 15387.7 15595.6 TRUE FALSE FALSE 17047.92352 15462.95687 14411.99293 15307.23134 14412.44767 14568.42857 16439.1144 13503.47885 14753.41249 15502.83668 1.099664782 0.99742758 0.929635861 0.98738261 0.929665194 0.939726636 1.060393962 0.871032775 0.9516589 1 13.9202446 -7.012290235 7.887519855 1.047186483 0.95814661 0.142883434 0.059134721 0.126546956 52.43827815 0.008976176 0.011356496 9.72E-08 7.012290235 -0.089039874 AALPSLTNPPSLS(ph)PIR ddPTM_HeLa_CUDC101_4h_R1 2 AALPSLTNPPSLSPIR 16 0 P42858 P42858 HTT Huntingtin 1 0 AALPSLTNPPS(0.134)LS(0.866)PIR;AALPSLTNPPS(0.019)LS(0.981)PIR ; 176.17 3.24E-07 36290000 3015.1 2044.05 1664.54 1861.17 2623.2 2416.17 1905.01 1092.93 1595.87 2070.37 TRUE FALSE FALSE 2661.674549 2107.024758 1754.530067 1937.076557 2429.691762 2370.085583 1978.486874 1217.344733 1530.087563 2058.055347 1.293295903 1.02379402 0.852518408 0.941216941 1.180576492 1.151614113 0.96133803 0.591502427 0.743462786 1 11.00706607 -7.012087409 24.01997532 1.139555804 0.96447321 0 0.208306416 486.2319688 966237.2381 0.030864262 0.038925693 9.73E-08 7.012087409 -0.175082594 S(ph)VEAAAELSAK ddPTM_HeLa_CUDC101_4h_R1 2 SVEAAAELSAK 11 0 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 1 0 S(1)VEAAAELSAK;S(1)VEAAAELSAK ; 182.07 1.39E-10 21071500 4912.4 3612.8 3431 3312.3 3144.5 3646 3677.6 3634.5 4122 3681.7 TRUE FALSE FALSE 4336.575919 3724.106086 3616.490238 3447.389911 2912.5365 3576.458625 3819.446264 4048.236789 3952.089415 3659.801085 1.184921207 1.017570627 0.988165792 0.941961006 0.795818251 0.977227598 1.043621272 1.106135742 1.07986454 1 11.83754952 -7.011339611 5.495791795 1.088139137 0.97101135 0.257774941 0.085259472 0.202343956 20.28652042 0.017104622 0.021762378 9.74E-08 7.011339611 -0.117127786 S(ph)HSDNDRPNCSWNTQYSSAYYTSR ddPTM_HeLa_CUDC101_4h_R1 2 SHSDNDRPNCSWNTQYSSAYYTSR 24 1 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.767)HS(0.039)DNDRPNCS(0.174)WNT(0.016)QY(0.002)S(0.001)SAYYTSR;S(0.749)HS(0.223)DNDRPNCS(0.028)WNTQYSSAYYTSR ; 93.74 1.19E-05 71330000 132.31 230.752 387.58 217.882 343.23 178.42 181.52 328.4 154.13 212.62 TRUE FALSE FALSE 116.8008224 237.8611956 408.5337472 226.7681697 317.9106067 175.0169358 188.5212872 365.7837286 147.7766962 211.3553268 0.552627767 1.125409041 1.932923827 1.072923844 1.504152327 0.82806967 0.891963737 1.730657723 0.69918605 1 7.723526663 -7.011294967 24.60252034 0.791387047 1.30156313 0.357604512 0.343081755 403.4336439 878754.2748 0.058091419 0.073491309 9.74E-08 7.011294967 0.510176083 KLNVTEQEK ddPTM_HeLa_CUDC101_4h_R1 1 KLNVTEQEK 9 1 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 0 91.701 0.027473 29293000 4628.2 3112.1 3889.4 3626.8 4742 3975.1 3979.5 3786.7 3892.7 4901.4 FALSE FALSE TRUE 4085.689412 3207.980112 4099.672729 3774.71658 4392.192107 3899.28159 4132.990648 4217.762622 3732.241258 4872.246255 0.838563816 0.658419124 0.84143381 0.774738464 0.901471699 0.800304703 0.848272118 0.865671069 0.766020653 1 12.25037134 -8.780408085 0.894212205 0.990343399 0.816201658 0 0.093872211 0.310442883 0.489851746 0.030307742 0.012896802 1.66E-09 8.780408085 -0.174141742 KLNVTEQEK(ac)IDK ddPTM_HeLa_CUDC101_4h_R1 2 KLNVTEQEKIDK 12 2 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 ENO1 Alpha-enolase;Enolase 0 1 ; KLNVTEQEK(1)IDK;KLNVTEQEK(1)IDK 173.59 2.37E-06 32877000 13053.9 5872.6 6802.9 5576.5 13801.6 10457 12937.2 13556.1 9596.7 8091.1 FALSE TRUE FALSE 11523.74163 6053.527845 7170.685352 5803.933774 12783.48346 10257.55015 13436.19214 15099.27163 9201.119964 8042.973777 1.432771255 0.752647965 0.891546529 0.721615404 1.589397631 1.27534298 1.670550285 1.877324488 1.143994773 1 12.9735133 -4.731965393 1.196829817 1.128153833 1.956547987 0.54837717 0.255575624 0.563998787 1.10791094 0.044243896 0.469229306 1.85E-05 4.731965393 0.828394154 KLNVTEQEKIDK ddPTM_HeLa_CUDC101_4h_R1 1 KLNVTEQEKIDK 12 2 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 ENO1 Alpha-enolase;Enolase 0 0 80.014 0.016715 36495000 1561.6 1920.4 1468.3 1603.4 2005 1662.8 1621.4 2382.6 1406.9 1767.8 FALSE FALSE TRUE 1378.551615 1979.565248 1547.680739 1668.793582 1857.095145 1631.08486 1683.937941 2653.825553 1348.906987 1757.285047 0.784478089 1.126490692 0.880722648 0.949643079 1.056797898 0.928184567 0.958261122 1.51018502 0.767608527 1 10.77913251 -4.260510673 4.799424268 0.928228623 1.542944166 0.726954156 0.104962638 0.071989408 4.717974713 0.014815532 0.147367887 5.49E-05 4.260510673 0.614715542 NGILAIEGTGSDVDDDMS(ph)GDEKQDNESNVDPR ddPTM_HeLa_CUDC101_4h_R1 1 NGILAIEGTGSDVDDDMSGDEKQDNESNVDPR 32 1 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 1 0 NGILAIEGT(0.006)GS(0.053)DVDDDMS(0.85)GDEKQDNES(0.091)NVDPR 58.776 0.00055246 5165800 1568.4 1196 1041.2 1345.2 1059.5 1339.2 1308 1010.4 1286.2 1154.6 TRUE FALSE FALSE 1384.55453 1232.847342 1097.490421 1400.06307 981.3427958 1313.656991 1358.449998 1125.419852 1233.182292 1147.732388 1.206339164 1.074159234 0.956225016 1.219851496 0.855027536 1.144567327 1.183594723 0.980559461 1.074451069 1 10.16457058 -7.011275342 24.19497505 1.09969116 1.06053759 0.019404486 0.113598485 1435.000035 3079273.605 0.019927331 0.02519534 9.74E-08 7.011275342 -0.03915357 NFVFHTLS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 1 NFVFHTLSPVK 11 0 E7ESG2;Q9HAW4-2;Q9HAW4-3;Q9HAW4 E7ESG2 CLSPN Claspin 1 0 NFVFHT(0.054)LS(0.946)PVK 117.03 0.00051093 0 2135.4 1098.8 784.2 1270.1 1182 889.62 1048.1 709.75 1033.3 866.58 TRUE FALSE FALSE 1885.091649 1132.652726 826.5962241 1321.900168 1094.806215 872.6519807 1088.525568 790.5450711 990.7069366 861.4255436 2.188339623 1.314858532 0.959567812 1.534549536 1.270923788 1.013032394 1.263632796 0.917717239 1.15007843 1 9.750582294 -7.010978351 24.37541925 1.571183462 1.176451441 0.091974751 0.342039363 587.3380591 1304078.972 0.075823736 0.096042586 9.75E-08 7.010978351 -0.394732021 QSMDMS(ph)PIK ddPTM_HeLa_CUDC101_4h_R1 3 QSMDMSPIK 9 0 F5H658;Q14562 F5H658 DHX8 ATP-dependent RNA helicase DHX8 1 0 QSMDMS(1)PIK;QSMDMS(1)PIK;QSMDMS(1)PIK ;; 124.39 0.004642 80978000 18867.4 10461.9 6975.3 12603.9 11572.9 11112.9 9816.3 8754 6632.7 6750.3 TRUE FALSE FALSE 16655.79197 10784.21874 7352.405817 13117.94152 10719.19022 10900.93995 10194.91798 9750.519975 6359.297299 6710.148915 2.482179186 1.607150434 1.095714255 1.954940447 1.597459365 1.624545161 1.519328126 1.453100385 0.947713289 1 12.71212907 -7.010875438 24.60202794 1.718062491 1.547266712 0 0.456197608 1890.548343 4276737.996 0.094521926 0.119812994 9.75E-08 7.010875438 -0.170795779 KLPVVSSVVK(ac)VK ddPTM_HeLa_CUDC101_4h_R1 2 KLPVVSSVVKVK 12 2 H0YJA2;Q6PJT7-5;Q6PJT7-2;Q6PJT7;Q6PJT7-9;G3V5I6;G3V256;Q6PJT7-10;Q6PJT7-4;Q6PJT7-3;Q6PJT7-11 H0YJA2 ZC3H14 Zinc finger CCCH domain-containing protein 14 0 1 ; KLPVVSSVVK(1)VK;KLPVVSSVVK(1)VK 145 0.00030877 3172530 2301.3 2378.7 2474.2 2511 2605.7 2374.2 3065.9 3424.2 2039.68 2126.04 FALSE TRUE FALSE 2031.545103 2451.984928 2607.962736 2613.409433 2413.482702 2328.916091 3184.15279 3813.997087 1955.603527 2113.39422 0.96127125 1.160211808 1.234016215 1.236593443 1.141993614 1.10197902 1.506653496 1.804678489 0.925337786 1 11.04534619 -1 0.418148403 0.99758866 15.66664396 0.831524653 0.104535898 19.47404533 0.223327202 0.026231365 241.0490517 0.1 1 14.6690553 QVQS(ph)LTCEVDALK ddPTM_HeLa_CUDC101_4h_R1 1 QVQSLTCEVDALK 13 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 QVQS(0.5)LT(0.5)CEVDALK 195.6 2.52E-24 0 4233 3218.6 3086.2 3179.5 3414.3 3558.5 3242.6 2589 3941.1 3137.6 TRUE FALSE FALSE 3736.814157 3317.761251 3253.049307 3309.173753 3162.433891 3490.627541 3367.668168 2883.721295 3778.64619 3118.937416 1.198104886 1.063747299 1.042999225 1.060993958 1.013945928 1.119172037 1.079748555 0.924584533 1.211517157 1 11.60683889 -7.010565959 24.02210662 1.095516714 1.046039142 0.193765344 0.074567223 694.5888204 1579175.8 0.013970981 0.017722273 9.76E-08 7.010565959 -0.049477572 DKEVS(ph)DDEAEEKEDK ddPTM_HeLa_CUDC101_4h_R1 3 DKEVSDDEAEEKEDK 15 2 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 DKEVS(1)DDEAEEKEDK;DKEVS(1)DDEAEEKEDK;DKEVS(1)DDEAEEKEDK ;; 75.533 0.024122 125940000 10390.2 8191.5 8302.5 8524.2 7807.3 8237.3 7756.6 7445.4 9914.8 9726.7 TRUE FALSE FALSE 9172.276507 8443.870406 8751.358264 8871.853721 7231.371033 8080.187227 8055.77466 8292.954241 9506.107747 9668.845156 0.948642403 0.873307026 0.905108948 0.917571186 0.747904317 0.835693105 0.833168236 0.857698526 0.983168889 1 13.23912787 -7.009955036 0.56546403 0.992545617 0.821448322 0.701568358 0.039732759 0.28363722 0.199152801 0.012238757 0.017786072 9.77E-08 7.009955036 -0.171097295 GPTWKEPVS(ph)PMELTGPEDGAASSGAGR ddPTM_HeLa_CUDC101_4h_R1 1 GPTWKEPVSPMELTGPEDGAASSGAGR 27 1 K7EQ54;A0A0C4DFL8;F5GX28;O94953 K7EQ54 KDM4B Lysine-specific demethylase 4B 1 0 GPT(0.019)WKEPVS(0.968)PMELT(0.013)GPEDGAASSGAGR 53.957 0.0072216 4853200 468.5 686.68 828.16 741.32 952.78 790.79 922.43 946.34 590.36 553.48 TRUE FALSE FALSE 413.5831402 707.8357969 872.9328346 771.5542339 882.4953176 775.7069983 958.0084341 1054.06752 566.0251109 550.1878763 0.751712566 1.286534704 1.586608633 1.402346847 1.603989029 1.40989475 1.741238721 1.915831965 1.028785139 1 9.103780539 -7.009801788 3.024298589 0.883439066 1.597138238 0.78517997 0.159385535 0.082479401 1.541694166 0.028791338 0.037182199 9.78E-08 7.009801788 0.713699172 TKFAS(ph)DDEHDEHDENGATGPVKR ddPTM_HeLa_CUDC101_4h_R1 1 TKFASDDEHDEHDENGATGPVKR 23 2 P05455 P05455 SSB Lupus La protein 1 0 T(0.296)KFAS(0.704)DDEHDEHDENGATGPVKR 47.089 0.02445 38648000 2048.8 2617.2 3063.2 2638 3909.9 2781.9 3127.5 3627.9 2558.8 2201.7 TRUE FALSE FALSE 1808.64277 2697.83283 3228.805858 2745.589042 3621.474467 2728.839892 3248.128723 4040.885472 2453.325181 2188.60419 0.826390984 1.232672788 1.475280853 1.254493185 1.654695939 1.246840294 1.484109706 1.846329953 1.120954256 1 11.09579535 -7.009308393 2.918416067 0.918385685 1.479105737 0.607955518 0.181761181 0.106224666 1.838603122 0.02860057 0.036974772 9.79E-08 7.009308393 0.560720052 NKAGT(ph)PVSELTK ddPTM_HeLa_CUDC101_4h_R1 1 NKAGTPVSELTK 12 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 NKAGT(0.743)PVS(0.134)ELT(0.122)K 142.45 0.02001 24401000 2000.3 2259.2 2624.6 2158.4 2828.2 2077.7 2317.5 2862.4 2451.4 2288 TRUE FALSE FALSE 1765.827866 2328.803274 2766.493815 2246.428881 2619.569321 2038.071334 2406.886751 3188.244046 2350.352254 2274.390874 0.776395951 1.023923944 1.216366917 0.987705722 1.151767425 0.896095459 1.058255544 1.401801283 1.03339856 1 11.1512645 -7.009198357 23.22716835 0.894711853 1.10292052 0.226470038 0.143857596 158.6528345 400623.5758 0.023780701 0.030318347 9.79E-08 7.009198357 0.208208667 NYS(ph)SPPPCHLSR ddPTM_HeLa_CUDC101_4h_R1 1 NYSSPPPCHLSR 12 0 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 NY(0.025)S(0.576)S(0.399)PPPCHLSR 69.878 0.036137 15267000 1616.2 1157.6 1050 1033.7 902.15 904.63 1228.4 1632.4 1379.4 1147.4 TRUE FALSE FALSE 1426.751486 1193.264284 1106.766176 1075.858754 835.6001918 887.37569 1275.779799 1818.225818 1322.540548 1140.575214 1.250905218 1.046195174 0.970357906 0.943259805 0.732612967 0.778007166 1.118540701 1.594130572 1.159538216 1 10.15554587 -7.009128416 22.31903991 1.120065506 0.999987497 0.040593151 0.229131852 281.5250164 688337.6534 0.039871666 0.050824784 9.79E-08 7.009128416 -0.120078009 SVNGGPGS(ph)PDLAR ddPTM_HeLa_CUDC101_4h_R1 2 SVNGGPGSPDLAR 13 0 A0A087X2C4;H0YAH0;O60245;O60245-2 A0A087X2C4 PCDH7 Protocadherin-7 1 0 SVNGGPGS(1)PDLAR;S(0.009)VNGGPGS(0.991)PDLAR ; 153.41 0.00019701 121429000 10957 7251.7 5101.9 7011.1 9960.8 7735.6 6654.8 6108.3 6451.9 6224.4 TRUE FALSE FALSE 9672.63707 7475.116282 5377.724146 7297.042963 9226.011629 7588.056318 6911.477865 6803.644181 6185.949951 6187.376992 1.563285554 1.208123619 0.869144413 1.17934352 1.49110223 1.226376917 1.11702873 1.099600718 0.999769363 1 12.59511222 -7.008295791 24.96106992 1.272296408 1.168287891 0 0.209195821 1252.090159 3767402.654 0.041655163 0.053312163 9.81E-08 7.008295791 -0.104008517 SLGNILQAKPTSS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 2 SLGNILQAKPTSSPAK 16 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SLGNILQAKPT(0.07)S(0.22)S(0.71)PAK;SLGNILQAKPTS(0.23)S(0.769)PAK ; 172.42 2.93E-06 382432000 11903.1 8491.9 7218.6 7612.3 7675.8 8452 7702.8 7951.5 8004.4 9039.4 TRUE FALSE FALSE 10507.83666 8753.525374 7608.859351 7922.762497 7109.571526 8290.792182 7999.899576 8856.666619 7674.455244 8985.633247 1.169404134 0.974169002 0.846780538 0.88171443 0.791215414 0.922671998 0.89029892 0.985647464 0.854080623 1 13.13340446 -7.008155845 5.194326283 1.079996911 0.884861902 0.15258458 0.093492936 0.093275522 7.696507621 0.01266027 0.016160917 9.81E-08 7.008155845 -0.195135009 RVS(ph)PLNLSSVTP ddPTM_HeLa_CUDC101_4h_R1 2 RVSPLNLSSVTP 12 1 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 1 0 RVS(0.998)PLNLS(0.001)SVTP;RVS(1)PLNLSSVTP ; 110.15 0.011693 152152000 9616.7 6802.4 5283.8 6555 7710.4 7886.8 6780.9 6021.2 6476.9 6165.5 TRUE FALSE FALSE 8489.445004 7011.973881 5569.458211 6822.341233 7141.619153 7736.37243 7042.441584 6706.629069 6209.919441 6128.827332 1.385166288 1.14409715 0.90873146 1.113156052 1.165250507 1.262292444 1.149068362 1.094276067 1.01323126 1 12.58139534 -7.008071779 24.83567423 1.186239217 1.117538375 0 0.131367338 1116.151143 3434240.469 0.027117869 0.034751757 9.82E-08 7.008071779 -0.068700842 S(ph)PGSQAPDEGAGGALR ddPTM_HeLa_CUDC101_4h_R1 1 SPGSQAPDEGAGGALR 16 0 P10075 P10075 GLI4 Zinc finger protein GLI4 1 0 S(1)PGSQAPDEGAGGALR 176.42 1.91E-16 0 329.44 362.73 377.2 505.94 411.98 314.19 351.16 363.38 452.5 396 TRUE FALSE FALSE 290.8235426 373.9052814 397.592573 526.5744201 381.5890562 308.1973492 364.7043588 404.7457104 433.8477585 393.6445744 0.738797284 0.949855036 1.010029348 1.337690024 0.969374611 0.782933055 0.926481355 1.028200912 1.10213067 1 8.620749783 -7.007994215 15.74054748 0.874952792 1.005856739 0 0.159292587 4.965820855 9780.005324 0.027220153 0.034717166 9.82E-08 7.007994215 0.130903947 RPDDVPLSLS(ph)PSKR ddPTM_HeLa_CUDC101_4h_R1 4 RPDDVPLSLSPSKR 14 2 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 0 RPDDVPLS(0.01)LS(0.495)PS(0.495)KR;RPDDVPLS(0.003)LS(0.96)PS(0.037)KR;RPDDVPLS(0.006)LS(0.953)PS(0.041)KR;RPDDVPLS(0.008)LS(0.926)PS(0.066)KR ;;; 152.68 0.00013487 527783000 11168.7 10242.2 10457.9 10819.2 10581 9467.3 10026.3 11328.2 11433.7 11006.7 TRUE FALSE FALSE 9859.521917 10557.75004 11023.28571 11260.45374 9800.46071 9286.727026 10413.01775 12617.7565 10962.39805 10941.23166 0.901134555 0.964950782 1.007499526 1.029176065 0.895736514 0.848782597 0.951722628 1.153229992 1.001934553 1 13.41748753 -7.007705375 24.45753478 0.952246653 0.973179585 0 0.081256243 1461.854875 4640067.923 0.013914925 0.017848927 9.82E-08 7.007705375 0.020932932 KLS(ph)GDQITLPTTVDYSSVPK ddPTM_HeLa_CUDC101_4h_R1 2 KLSGDQITLPTTVDYSSVPK 20 1 E9PJ38;E9PND3;E9PN10;O00559;O00559-2 E9PJ38 EBAG9 Receptor-binding cancer antigen expressed on SiSo cells 1 0 KLS(1)GDQITLPTTVDYSSVPK;KLS(1)GDQITLPTTVDYSSVPK ; 106.5 0.00010935 190791000 12364.3 9061.8 7509.1 9280.8 8447.7 9564.4 7813.1 8765.2 6539.3 9649.4 TRUE FALSE FALSE 10914.9755 9340.983317 7915.06466 9659.311139 7824.530001 9381.975005 8114.453884 9762.994938 6269.747286 9592.00494 1.137924299 0.97383012 0.825173122 1.007016906 0.815734568 0.978103646 0.845960144 1.017826304 0.653643042 1 13.22761669 -7.007303609 23.95941165 1.06464389 0.913135931 0 0.149733808 131.049108 429907.6073 0.012485823 0.016034217 9.83E-08 7.007303609 -0.151507958 RES(ph)PSEERLEPK ddPTM_HeLa_CUDC101_4h_R1 1 RESPSEERLEPK 12 2 A0A1C7CYX1;Q6PJG2;A0A0A0MSU2 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 RES(0.994)PS(0.006)EERLEPK 87.824 0.020297 102090000 3144.7 3370.4 3676.5 3527.3 3641.2 3581.1 3444.9 3660.8 3221.6 3615.9 TRUE FALSE FALSE 2776.083033 3474.238029 3875.262711 3671.15854 3372.59593 3512.796484 3577.770947 4077.530675 3088.804284 3594.392466 0.772337206 0.966571698 1.078141229 1.021357176 0.938293735 0.977299089 0.995375708 1.134414428 0.859339739 1 11.81153223 -7.007089248 24.36665853 0.891280035 1.017153458 0.445303859 0.072633616 238.531039 819865.5207 0.015789949 0.020299172 9.84E-08 7.007089248 0.125873424 QS(ph)PLTYEDHGAPFAGHLPR ddPTM_HeLa_CUDC101_4h_R1 2 QSPLTYEDHGAPFAGHLPR 19 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 QS(0.83)PLT(0.163)Y(0.007)EDHGAPFAGHLPR;QS(0.973)PLT(0.019)Y(0.008)EDHGAPFAGHLPR ; 121.65 3.53E-05 58682000 9369.8 5689.08 6794.03 5359.5 4570.69 4502.2 5055.52 5953.2 5974.2 8908.7 TRUE FALSE FALSE 8271.486248 5864.353812 7161.335813 5578.083576 4233.519305 4416.328036 5250.5131 6630.888224 5727.940947 8855.710656 0.934028512 0.662211542 0.808668676 0.629885482 0.478055288 0.498698321 0.592895737 0.748769747 0.646807599 1 13.11239237 -7.006309641 0.920264275 0.984688944 0.578379838 0.272653756 0.13997676 0.168339815 0.282690571 0.019597249 0.026853972 9.86E-08 7.006309641 -0.406309106 S(ph)PPLIGSESAYESFLSADDK ddPTM_HeLa_CUDC101_4h_R1 3 SPPLIGSESAYESFLSADDK 20 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.919)PPLIGS(0.08)ES(0.001)AYESFLSADDK;S(0.999)PPLIGS(0.001)ESAYESFLSADDK;S(0.995)PPLIGS(0.005)ESAYESFLSADDK ;; 143.69 1.25E-05 29202500 11081.9 7988.2 7304 7030.1 7334.12 7741.48 7564.91 6365.35 9209.6 9323.45 TRUE FALSE FALSE 9782.896481 8234.306974 7698.876333 7316.817865 6793.096579 7593.824167 7856.691113 7089.955714 8829.97639 9267.993705 1.055557092 0.888467044 0.830695033 0.789471605 0.732963012 0.819360091 0.847722966 0.764993583 0.952738713 1 13.17804135 -7.005606599 2.440962935 1.026344264 0.796021356 0.83021903 0.041076864 0.06396203 0.762281462 0.006473637 0.008415051 9.87E-08 7.005606599 -0.230322908 SPAAPYFLGSSFS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 2 SPAAPYFLGSSFSPVR 16 0 P30291 P30291 WEE1 Wee1-like protein kinase 1 0 SPAAPYFLGS(0.025)S(0.202)FS(0.773)PVR;SPAAPYFLGS(0.001)S(0.007)FS(0.992)PVR ; 161.08 5.57E-05 35335000 1758.86 952.93 684.49 916.24 909.53 958.03 765.44 776.66 637.88 783.41 TRUE FALSE FALSE 1552.689097 982.2886438 721.4955999 953.6082275 842.4357839 939.7571739 794.9632772 865.071835 611.5863164 778.7502425 1.993821655 1.261365442 0.926478812 1.224536669 1.081779161 1.206750409 1.0208193 1.110846312 0.78534334 1 9.605016897 -7.005306811 24.71090259 1.47763566 1.101473371 0 0.322131057 262.7808925 1223632.919 0.060173262 0.077803547 9.88E-08 7.005306811 -0.376162289 SEDES(ph)ETEDEEEKSQEDQEQKR ddPTM_HeLa_CUDC101_4h_R1 1 SEDESETEDEEEKSQEDQEQKR 22 2 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 1 0 S(0.011)EDES(0.903)ET(0.071)EDEEEKS(0.015)QEDQEQKR 54.171 0.023415 15292000 1022.3 1073.4 1159.5 1138.7 1207.8 1316.2 1202.6 863.97 1383.5 1137.9 TRUE FALSE FALSE 902.4675437 1106.470182 1222.186077 1185.141108 1118.703 1291.095678 1248.984685 962.3208525 1326.471544 1131.13172 0.797844785 0.978197465 1.080498456 1.047748098 0.989012137 1.14141939 1.10419031 0.850759319 1.172694144 1 10.14355123 -7.005249648 14.19331135 0.903667577 1.040919941 0 0.12141892 0.847389081 2288.199099 0.016505481 0.021161158 9.88E-08 7.005249648 0.137252364 (ac)MEITIRNS(ph)PYR ddPTM_HeLa_CUDC101_4h_R1 1 MEITIRNSPYR 11 1 P21127;P21127-8;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-9;P21127-2;P21127-3;P21127-6;Q9UQ88-9;A0A087WYI9;A0A087X1I0 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 MEIT(0.018)IRNS(0.982)PYR 73.666 0.0014325 11895000 758.35 793.22 1040.7 721.09 956.86 852.74 836.24 804.68 1010.3 783.41 TRUE FALSE FALSE 669.4573626 817.658168 1096.96339 750.499167 886.2743441 836.4754053 868.4940569 896.2815186 968.6550064 778.7502425 0.859656057 1.049962008 1.408620287 0.963722547 1.13807264 1.074125387 1.115240817 1.15092294 1.243858369 1 9.605016897 -7.0047471 24.98259947 0.934836071 1.137577389 0 0.146214342 146.1120456 768948.7447 0.01776649 0.023011562 9.89E-08 7.0047471 0.202741317 LTVNGVCAS(ph)TPPLTPIK ddPTM_HeLa_CUDC101_4h_R1 1 LTVNGVCASTPPLTPIK 17 0 Q9UJM3 Q9UJM3 ERRFI1 ERBB receptor feedback inhibitor 1 1 0 LTVNGVCAS(0.941)T(0.057)PPLT(0.002)PIK 89.484 0.0072735 11889000 1280.4 1256.1 1569.4 1672.5 1982 2089.9 1624.1 969.16 1301.9 939.89 TRUE FALSE FALSE 1130.313453 1294.798952 1654.246511 1740.711779 1835.791809 2050.03864 1686.742081 1079.485257 1248.235131 934.2994925 1.209797781 1.385850001 1.77057413 1.863119688 1.964885803 2.194198601 1.805354808 1.155395316 1.336011783 1 9.867741274 -7.004340907 1.487555376 1.082917792 1.836193923 0.519051661 0.263374868 0.179532604 0.778511125 0.04727626 0.062400783 9.90E-08 7.004340907 0.753276131 AAGARPLTS(ph)PESLSR ddPTM_HeLa_CUDC101_4h_R1 1 AAGARPLTSPESLSR 15 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 AAGARPLT(0.013)S(0.938)PES(0.046)LS(0.003)R 135.91 0.0027031 86467000 1146.9 1058 1141.8 1109.6 1099.3 1100.8 977.13 1171.4 1124.2 1095.5 TRUE FALSE FALSE 1012.462121 1090.595726 1203.529162 1154.854284 1018.206829 1079.804074 1014.818231 1304.747441 1077.86 1088.983917 0.929731013 1.001480103 1.105185433 1.060487915 0.935006305 0.991570267 0.931894599 1.198132884 0.989785049 1 10.08876693 -7.004177751 24.73796572 0.966753638 1.028852366 0.118607905 0.076215304 249.00697 1474473.727 0.012228523 0.01585712 9.90E-08 7.004177751 0.062098728 KLVIIEGDLER ddPTM_HeLa_CUDC101_4h_R1 3 KLVIIEGDLER 11 1 J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;P06753-7;P06753-2;A0A087WWU8;P06753-5;P06753-3;P06753-6;P06753-4 J3KN67;P06753-2 TPM3 Tropomyosin alpha-3 chain 0 0 ;; ;; 122.55 0.0038596 71598070 7965.37 7572.28 6803.61 6933.38 7733.14 7622.3 6821.89 6950.04 7775.06 7875.67 FALSE FALSE TRUE 7031.681403 7805.572971 7171.433736 7216.153205 7162.681669 7476.917327 7085.012582 7741.204461 7454.568736 7828.825165 0.898178367 0.997029926 0.916029364 0.92174152 0.914911435 0.955049726 0.904990523 0.988807937 0.952195071 1 12.93458011 -9.539518797 1.271650345 1.000394537 0.931984515 0.098268957 0.035381184 0.376651268 1.080653541 0.022498073 0.005223829 2.89E-10 9.539518797 -0.068410023 ASPAPGS(ph)GHPEGPGAHLDMNSLDR ddPTM_HeLa_CUDC101_4h_R1 1 ASPAPGSGHPEGPGAHLDMNSLDR 24 0 O94826 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 1 0 AS(0.383)PAPGS(0.617)GHPEGPGAHLDMNSLDR 96.633 1.34E-05 29479000 1146.9 763.14 394.33 513.16 993.91 871.76 708.95 514.36 552.23 838.63 TRUE FALSE FALSE 1012.462121 786.6514389 415.6486726 534.0888829 920.5912394 855.1326305 736.294439 572.9126633 529.4668457 833.6417915 1.214504996 0.943632441 0.498593853 0.640669516 1.104300731 1.025779465 0.883226401 0.687240814 0.635125123 1 9.703283793 -7.003727593 24.9601117 1.100124283 0.817318118 0 0.227859844 138.5588371 927803.1346 0.031396942 0.040765694 9.91E-08 7.003727593 -0.282806165 KLYDIDVAK ddPTM_HeLa_CUDC101_4h_R1 1 KLYDIDVAK 9 1 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 RPL23A 60S ribosomal protein L23a 0 0 99.283 0.019255 16511000 3333.1 3137.3 2896.5 3328.8 3710.2 3482.6 2916 3423.4 3443 3068.2 FALSE FALSE TRUE 2942.399071 3233.956494 3053.093551 3464.562852 3436.505938 3416.175207 3028.471097 3813.106018 3301.078083 3049.95021 0.964736756 1.060330914 1.001030621 1.13594079 1.126741652 1.12007573 0.992957553 1.250219104 1.082338352 1 11.57456998 -6.511228658 1.488806694 0.985429274 1.11850709 0.276143015 0.070853921 0.239220161 1.05894674 0.010031597 0.016568232 3.08E-07 6.511228658 0.133077816 KLYGDADYLEER ddPTM_HeLa_CUDC101_4h_R1 2 KLYGDADYLEER 12 1 B4E1E0;P17812-2;P17812;A0A3B3IRI2 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 0 0 ; ; 93.649 0.017672 60840000 14019 13016.9 11449.1 11463.3 12289.9 12273 10765.8 9334.8 13154.9 13485.7 FALSE FALSE TRUE 12375.71407 13417.93526 12068.07298 11930.82292 11383.29856 12038.91297 11181.04051 10397.4359 12612.64945 13405.48646 0.923182766 1.000928635 0.900233872 0.889995522 0.849152218 0.898058643 0.834064511 0.775610489 0.940857275 1 13.71053595 -1 0.169030417 1.006694878 0.131447616 0.747972257 0.033634983 19.38093682 0.202865568 0.049030262 4.305894557 0.1 1 -0.875247262 HLQQGSES(ph)PMMIGELR ddPTM_HeLa_CUDC101_4h_R1 3 HLQQGSESPMMIGELR 16 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 HLQQGSES(1)PMMIGELR;HLQQGS(0.008)ES(0.992)PMMIGELR;HLQQGSES(1)PMMIGELR ;; 150.61 0.00011121 31189400 10493.3 7524.79 6100.21 6655.3 8568.7 7830.2 6602.6 5201.28 8095.7 7953.3 TRUE FALSE FALSE 9263.291281 7756.619861 6430.005805 6926.731901 7936.604072 7680.851981 6857.264494 5793.372691 7761.991819 7905.993418 1.17167961 0.981106289 0.813307761 0.876136816 1.003871829 0.971522689 0.867350139 0.732782382 0.981785768 1 12.94873104 -7.003670694 6.81384071 1.080998594 0.887459949 0.439152422 0.086733547 0.091478831 23.27274082 0.015736588 0.020116723 9.92E-08 7.003670694 -0.193538645 GSLPQLVS(ph)PIVSR ddPTM_HeLa_CUDC101_4h_R1 2 GSLPQLVSPIVSR 13 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 GSLPQLVS(0.999)PIVS(0.001)R;GSLPQLVS(0.904)PIVS(0.096)R ; 135.61 0.00090619 103674000 3553.7 2474.06 1959.5 2012.42 2647.71 2839.5 2163.28 2229.21 3009.3 2481.65 TRUE FALSE FALSE 3137.140673 2550.282856 2065.436497 2094.495186 2452.393708 2785.341268 2246.718434 2482.974256 2885.25538 2466.889035 1.271699143 1.033805258 0.837263642 0.849043129 0.994124046 1.129090619 0.910749694 1.006520447 1.169592689 1 11.26847711 -7.003572868 24.64818788 1.12958921 0.95560212 0.423279674 0.100067129 120.4176612 830734.1601 0.020744152 0.02694129 9.92E-08 7.003572868 -0.17398709 KMEGHDGIEK ddPTM_HeLa_CUDC101_4h_R1 1 KMEGHDGIEK 10 1 Q8TDB6 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 0 0 90.108 0.022031 16378000 1733.6 1620.4 1715.1 1589.6 1580.3 1963.2 1694.2 1942 1865.8 1651.6 FALSE FALSE TRUE 1530.390036 1670.322603 1807.823494 1654.430759 1463.724417 1925.755231 1759.545862 2163.06943 1788.890934 1641.77621 0.932155081 1.017387506 1.101138805 1.00770784 0.891549292 1.172970603 1.071733072 1.317517831 1.089607051 1 10.68104177 -1 0.581059024 0.976730253 19.21156511 0.532495001 0.079342042 62.49556167 0.474056568 0.012607403 1443.304927 0.1 1 18.23483485 S(ph)PPTQVAISSDSAR ddPTM_HeLa_CUDC101_4h_R1 1 SPPTQVAISSDSAR 14 0 Q6ZUT6-4;Q6ZUT6;H0YM82;Q6ZUT6-3 Q6ZUT6-4 C15orf52 Uncharacterized protein C15orf52 1 0 S(0.999)PPT(0.001)QVAISSDSAR 100.58 0.0074055 24921000 0 67.878 120.54 190.54 58.319 134.62 58.755 0 0 69.038 TRUE FALSE FALSE 0 69.96924072 127.056757 198.3110448 54.01692356 132.0523478 61.02120003 0 0 68.62735891 0 1.019553161 1.851400943 2.889679101 0.787104799 1.924193935 0.889167251 0 0 1 6.100711929 -7.00356332 21.42687212 0.526830237 1.432739482 0.257641038 0.779969558 27.39437609 164736.468 0.131985847 0.170970987 9.92E-08 7.00356332 0.905909245 HGGS(ph)PQPLATT(ph)PLSQEPVNPPSEAS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 HGGS(0.994)PQPLAT(0.277)T(0.729)PLSQEPVNPPS(0.194)EAS(0.712)PT(0.094)R 112.39 2.70E-10 48144000 1424.6 1046.2 933.78 880.61 1051 1405.2 909.73 643.17 1289 1106.3 TRUE FALSE FALSE 1257.610548 1078.432182 984.2629713 916.5250821 973.4698239 1378.398151 944.8185908 716.385873 1235.866874 1099.719678 1.143573742 0.980642798 0.895012602 0.833417006 0.885198149 1.253408644 0.859144934 0.651425893 1.123801728 1 10.10292011 -7.003012011 4.668785325 1.067894382 0.908663624 0.258461449 0.144045374 0.240736129 13.93456401 0.024633219 0.031601775 9.93E-08 7.003012011 -0.159230757 KMQQNIQELEEQLEEEESAR ddPTM_HeLa_CUDC101_4h_R1 6 KMQQNIQELEEQLEEEESAR 20 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;;;;; ;;;;; 166.3 1.98E-06 20414100 10308.05 9583.03 9585.75 8881.1 13141.12 10880.04 9534.41 9855.27 10580.5 9399.76 FALSE FALSE TRUE 9099.756005 9878.271796 10103.98464 9243.309645 12171.72576 10672.52136 9902.155388 10977.1541 10144.36731 9343.849809 0.973876527 1.057195053 1.081351354 0.989239964 1.302645698 1.142197443 1.059751129 1.17479993 1.085673199 1 13.18980137 -6.414897783 1.131382616 0.989193412 1.150688905 0.291817715 0.079321168 0.294414743 0.748860793 0.012614483 0.023330156 3.85E-07 6.414897783 0.161495493 EIAIVHS(ph)DAEKEQEEEEQKQEMEVK ddPTM_HeLa_CUDC101_4h_R1 1 EIAIVHSDAEKEQEEEEQKQEMEVK 25 2 Q9H307 Q9H307 PNN Pinin 1 0 EIAIVHS(1)DAEKEQEEEEQKQEMEVK 50.055 0.015612 19180000 5565.2 3792.7 3543.7 3735.3 3397.5 4021 3543.5 3351.1 4302.3 3472.3 TRUE FALSE FALSE 4912.855692 3909.548592 3735.283141 3887.641679 3146.873194 3944.306124 3680.173982 3732.575678 4124.957373 3451.646605 1.423336817 1.132661897 1.082174269 1.126315097 0.911702023 1.142731738 1.06620822 1.081389871 1.195069439 1 11.75306905 -7.002971203 20.27983901 1.204019018 1.070556224 0.23601829 0.111188317 17.06818818 116512.4758 0.0267253 0.034629625 9.93E-08 7.002971203 -0.133462794 NPYLLS(ph)EEEDDDVDGDVNVEKNETEPPKGK ddPTM_HeLa_CUDC101_4h_R1 2 NPYLLSEEEDDDVDGDVNVEKNETEPPKGK 30 2 G3V5V3;O60524-4;O60524-5;O60524-3;O60524 G3V5V3 NEMF Nuclear export mediator factor NEMF 1 0 NPY(0.002)LLS(0.998)EEEDDDVDGDVNVEKNETEPPKGK;NPY(0.001)LLS(0.999)EEEDDDVDGDVNVEKNETEPPKGK ; 74.063 1.40E-05 142835000 6159.9 7324 8154.9 7154.8 9103.6 7977 7129.4 7602.5 6326.5 8664.6 TRUE FALSE FALSE 5437.84586 7549.643759 8595.778561 7446.60367 8432.045565 7824.852016 7404.383346 8467.93787 6065.718992 8613.062574 0.6313487 0.876534182 0.997993279 0.864570947 0.978983433 0.90848661 0.859669053 0.983150627 0.704246479 1 13.0723106 -7.001074704 24.81414747 0.822126602 0.927699982 0.289542692 0.100776697 64.6018353 1491665.158 0.022824455 0.029781539 9.98E-08 7.001074704 0.10557338 GTDTQTPAVLSPS(ph)KTQATLKPK ddPTM_HeLa_CUDC101_4h_R1 2 GTDTQTPAVLSPSKTQATLKPK 22 2 P46087;P46087-4;P46087-2 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 GTDT(0.001)QT(0.02)PAVLS(0.396)PS(0.496)KT(0.071)QAT(0.016)LKPK;GTDTQT(0.003)PAVLS(0.132)PS(0.792)KT(0.07)QAT(0.004)LKPK ; 67.312 0.0042217 156882000 3568.9 3924 4947.7 4142.7 4912.3 4793.9 3642.7 3050.9 4985.6 4266.7 TRUE FALSE FALSE 3150.558952 4044.893789 5215.187628 4311.657212 4549.929416 4702.464345 3783.200159 3398.202124 4780.091458 4241.321479 0.742824841 0.953687149 1.229613849 1.016583448 1.072762213 1.108726223 0.891986184 0.801213051 1.1270288 1 12.05029812 -7.000909294 24.99988061 0.876961424 1.026500578 0 0.146549631 43.62808139 1199539.001 0.023496903 0.030664659 9.98E-08 7.000909294 0.149539154 TGNDGSLTTTTTSTT(ph)PQLHTR ddPTM_HeLa_CUDC101_4h_R1 2 TGNDGSLTTTTTSTTPQLHTR 21 0 Q8IWY7;Q6IQ55-2;Q6IQ55;A0A0B4J292;Q6IQ55-3 Q8IWY7 TTBK2 Tau-tubulin kinase 2 1 0 TGNDGSLTTTTTS(0.003)T(0.053)T(0.943)PQLHTR;TGNDGSLTTTT(0.006)T(0.307)S(0.029)T(0.163)T(0.494)PQLHTR ; 187.09 3.30E-13 16981100 5411.2 4361 3689.1 4121.4 4718.7 4738.6 4004.4 3753 4645.8 4729.4 TRUE FALSE FALSE 4776.907339 4495.357241 3888.543905 4289.488506 4370.610902 4648.2191 4158.851049 4180.22635 4454.298158 4701.269318 1.016088851 0.956200748 0.827126387 0.912410716 0.92966614 0.988715767 0.884623017 0.889169726 0.947467132 1 12.19883461 -7.000757732 24.99855471 1.006468426 0.908078248 0.419253171 0.042501349 14.73470186 486137.1248 0.006320611 0.008251997 9.98E-08 7.000757732 -0.098390178 DETFGEYS(ph)DNEEK ddPTM_HeLa_CUDC101_4h_R1 2 DETFGEYSDNEEK 13 0 P32004-3;P32004-2;H3BLW5 P32004-3 L1CAM Neural cell adhesion molecule L1 1 0 DETFGEYS(1)DNEEK;DETFGEYS(1)DNEEK ; 186.95 4.39E-11 14645100 4683.9 2926.99 2006.9 2889.93 2340.62 2545.73 1926.31 1484.05 2385.46 3553.7 TRUE FALSE FALSE 4134.860342 3017.167093 2115.399085 3007.793837 2167.957126 2497.174442 2000.608422 1652.988253 2287.130329 3532.562434 1.170498871 0.854101562 0.598828506 0.851448175 0.613706669 0.706901715 0.566333493 0.467928956 0.647442295 1 11.78649934 -7.000490133 3.530664021 1.079760462 0.644324381 0.320351191 0.170454802 0.080868628 2.161243039 0.018771618 0.02423896 9.99E-08 7.000490133 -0.435436081 AASSDQLRDNS(ph)PPPAFKPEPPK ddPTM_HeLa_CUDC101_4h_R1 1 AASSDQLRDNSPPPAFKPEPPK 22 2 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 AAS(0.001)S(0.003)DQLRDNS(0.996)PPPAFKPEPPK 62.871 0.0044229 43423000 4895 3774.3 3519.5 3884.6 3444.3 2859.1 3693.2 4827.4 4323.9 3757.7 TRUE FALSE FALSE 4321.21552 3890.581709 3709.774816 4043.030779 3190.220851 2804.567431 3835.647961 5376.931703 4145.667012 3735.349033 1.15684384 1.041557743 0.99315346 1.08237028 0.854062317 0.750818038 1.026851287 1.439472364 1.109847293 1 11.86702734 -7.000096073 19.3541144 1.075388073 1.007874664 0.020300316 0.171943359 0.689199593 135628.4172 0.028787214 0.037463782 1.00E-07 7.000096073 -0.067513409 GHTDTEGRPPS(ph)PPPTSTPEK ddPTM_HeLa_CUDC101_4h_R1 4 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 1 0 GHT(0.156)DT(0.03)EGRPPS(0.809)PPPT(0.002)S(0.001)T(0.001)PEK;GHTDT(0.001)EGRPPS(0.981)PPPT(0.008)S(0.008)T(0.003)PEK;GHT(0.002)DT(0.001)EGRPPS(0.997)PPPTSTPEK;GHT(0.003)DT(0.009)EGRPPS(0.987)PPPTSTPEK ;;; 73.461 0.0032736 555148000 23699.1 21848.1 23371 21400 24816 24133 22332 20446.8 23206.3 22735.3 TRUE FALSE FALSE 20921.12742 22521.21406 24634.50695 22272.7845 22985.37312 23672.70323 23193.35272 22774.38106 22249.72649 22600.06942 0.925710759 0.996510836 1.090019083 0.985518411 1.017048784 1.047461527 1.026251393 1.007712881 0.984498148 1 14.46403958 -6.999873692 24.99993337 0.964718538 1.028535263 0.418985445 0.031172522 3.310776528 655092.0177 0.005818437 0.007606043 1.00E-07 6.999873692 0.063816725 RVS(ph)PLNLSSVT(ph)P ddPTM_HeLa_CUDC101_4h_R1 2 RVSPLNLSSVTP 12 1 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 2 0 RVS(1)PLNLSSVT(1)P;RVS(1)PLNLSSVT(1)P ; 151.49 0.0011328 45541000 12318.8 9724.5 8508.2 9183.9 11230.3 9969.2 9454.8 7733.8 11342.5 10107.7 TRUE FALSE FALSE 10874.80894 10024.10032 8968.179028 9558.459138 10401.86314 9779.05412 9819.474803 8614.184531 10874.95735 10047.57895 1.082331275 0.997663255 0.892571143 0.951319635 1.035260653 0.973274673 0.977297601 0.857339323 1.082346046 1 13.29456029 -6.998899274 24.98279204 1.038937534 0.953690663 0.460726107 0.050894724 30.67914989 696288.7857 0.008689072 0.011367961 1.00E-07 6.998899274 -0.085246871 S(ph)LDFFR ddPTM_HeLa_CUDC101_4h_R1 1 SLDFFR 6 0 Q6P3S1 Q6P3S1 DENND1B DENN domain-containing protein 1B 1 0 S(1)LDFFR 103.83 0.0023907 0 2005.1 1368.7 1210.8 1212.2 1417.9 1573.5 1539.8 866.63 1404.3 1197.1 TRUE FALSE FALSE 1770.065218 1410.868025 1276.25951 1261.638756 1313.304342 1543.488109 1599.190602 965.2836562 1346.41416 1189.979596 1.487475267 1.185623711 1.072505373 1.060218814 1.103636017 1.297071071 1.343880691 0.811176645 1.131459871 1 10.21672112 -6.998294114 24.64363532 1.235794165 1.130350048 0.043155939 0.177219876 129.2792637 1867553.025 0.035810003 0.046878328 1.00E-07 6.998294114 -0.105444117 QIDS(ph)S(ph)EEDDDEEDYDNDKR ddPTM_HeLa_CUDC101_4h_R1 2 QIDSSEEDDDEEDYDNDKR 19 1 O14646-2;O14646 O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 2 0 QIDS(1)S(1)EEDDDEEDYDNDKR;QIDS(0.992)S(0.978)EEDDDEEDY(0.03)DNDKR ; 93.404 0.0014069 44589000 4084.3 3328.1 2740.8 3180.2 3575.7 3567.6 3274.2 2944.1 4005.8 3544.4 TRUE FALSE FALSE 3605.544545 3430.634816 2888.975938 3309.902302 3311.927735 3499.553974 3400.486991 3279.244444 3840.679229 3523.317751 1.023337888 0.973694415 0.819958954 0.939427703 0.940002568 0.993255284 0.965137757 0.930726286 1.090074611 1 11.78271888 -6.998279397 24.99783533 1.010362541 0.933208434 0.45768655 0.049164324 41.95730664 609565.1616 0.007051035 0.009229705 1.00E-07 6.998279397 -0.077154107 IVSAQS(ph)LAEDDVE ddPTM_HeLa_CUDC101_4h_R1 1 IVSAQSLAEDDVE 13 0 Q15388 Q15388 TOMM20 Mitochondrial import receptor subunit TOM20 homolog 1 0 IVS(0.01)AQS(0.99)LAEDDVE 102.28 0.0081334 1224100 1776.3 1380.4 970.39 1143.6 1194.3 1122.8 1422.3 1727 948.83 1543.4 TRUE FALSE FALSE 1568.084807 1422.928488 1022.852219 1190.240951 1106.198868 1101.384461 1477.158587 1923.594699 909.7188258 1534.219788 1.022073121 0.927460654 0.666692104 0.775795593 0.721017208 0.717879191 0.962807675 1.253793436 0.592952087 1 10.58328946 -6.997913186 24.90018915 1.008546766 0.836066998 0 0.20568394 79.06804731 943434.5278 0.02613454 0.034221416 1.00E-07 6.997913186 -0.172479768 ETEEQDS(ph)DSAEQGDPAGEGK ddPTM_HeLa_CUDC101_4h_R1 1 ETEEQDSDSAEQGDPAGEGK 20 0 H0Y626;O95361 H0Y626 TRIM16 Tripartite motif-containing protein 16 1 0 ET(0.004)EEQDS(0.934)DS(0.062)AEQGDPAGEGK 94.403 0.00084657 33445000 7015.7 5130.8 4575.9 4922 4426.2 5508.4 5031.5 4704.8 5696.9 5016.2 TRUE FALSE FALSE 6193.330281 5288.873867 4823.286995 5122.740435 4099.688044 5403.336448 5225.56664 5240.375415 5462.071371 4986.363419 1.242053529 1.060667549 0.96729552 1.027349995 0.822179954 1.083622671 1.047971478 1.050941332 1.095401781 1 12.28377232 -6.997824044 16.56053932 1.116253396 1.000297094 0.255664974 0.08666189 1.282366246 9729.440622 0.017873762 0.023272082 1.01E-07 6.997824044 -0.115956302 KNPLPPSVGVVDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 KNPLPPSVGVVDKK 14 2 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 1 ; KNPLPPSVGVVDK(1)K;KNPLPPSVGVVDK(1)K 120.77 0.0078647 8239200 10999.5 5148.2 5393.1 4144.5 9944 9506.9 10682.7 8603.4 9506.8 8134.9 FALSE TRUE FALSE 9710.155284 5306.80994 5684.667299 4313.530624 9210.450931 9325.571722 11094.73532 9582.77628 9114.92568 8086.513253 1.200783945 0.656254405 0.702981263 0.53342281 1.138989159 1.153225306 1.372004839 1.185031914 1.12717625 1 12.98130206 -5.287444846 3.062186406 0.989735666 1.262299558 0.277808597 0.224116258 0.360020816 6.812641211 0.037937478 0.099442252 5.16E-06 5.287444846 0.272563892 S(ph)PDLEASLDTLENNCHVGSDIDFRPK ddPTM_HeLa_CUDC101_4h_R1 4 SPDLEASLDTLENNCHVGSDIDFRPK 26 1 Q13111;Q13111-3;Q13111-2;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 S(1)PDLEASLDTLENNCHVGSDIDFRPK;S(1)PDLEASLDTLENNCHVGSDIDFRPK;S(1)PDLEASLDTLENNCHVGSDIDFRPK;S(1)PDLEASLDTLENNCHVGSDIDFRPK ;;; 189.98 5.75E-18 80006000 8591.9 6313.61 5346.09 5113.52 6320.8 7079.5 6555.96 5740.45 6780.4 6128.98 TRUE FALSE FALSE 7584.770506 6508.124841 5635.115796 5322.071448 5854.527177 6944.470333 6808.825573 6393.919624 6500.909042 6092.524554 1.244930642 1.068214791 0.924922952 0.873541239 0.960936164 1.139834607 1.117570477 1.049469652 1.067030421 1 12.57282445 -6.997768255 24.95897333 1.117814905 1.011826889 0.160061961 0.095324481 107.6727225 1204150.108 0.019978442 0.026165934 1.01E-07 6.997768255 -0.105988016 ASVVDPSTESSPAPQEGSEQPAS(ph)PASPLSSR ddPTM_HeLa_CUDC101_4h_R1 1 ASVVDPSTESSPAPQEGSEQPASPASPLSSR 31 0 Q66K14;Q66K14-2 Q66K14 TBC1D9B TBC1 domain family member 9B 1 0 ASVVDPSTESSPAPQEGSEQPAS(0.427)PAS(0.359)PLS(0.107)S(0.107)R 189.68 2.10E-23 7947100 3043.6 2409.7 1887.7 2341.3 2532.5 2353.3 2168.7 2118 2404.4 2652.3 TRUE FALSE FALSE 2686.833822 2483.940001 1989.754772 2436.788334 2345.68252 2308.414723 2252.347485 2359.104559 2305.289614 2636.524002 1.019081875 0.94212683 0.754688662 0.924242803 0.889687528 0.875552326 0.854286737 0.894778336 0.874367012 1 11.36442142 -6.997707272 24.99974276 1.007515809 0.867512244 0.307760336 0.059448398 27.31686976 297855.9503 0.006417183 0.008403698 1.01E-07 6.997707272 -0.140003565 ATVTPS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 4 ATVTPSPVK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 ATVT(0.24)PS(0.76)PVK;ATVT(0.155)PS(0.845)PVK;AT(0.003)VT(0.026)PS(0.971)PVK;AT(0.002)VT(0.047)PS(0.951)PVK ;;; 133.91 0.00268 2241712000 43682.1 24678.5 15887.7 25161.4 19219.1 23439.1 21003.9 20117 16658.3 19778.8 TRUE FALSE FALSE 38561.75046 25438.81533 16746.63712 26187.59065 17801.34528 22992.03822 21814.02746 22407.03796 15971.63782 19661.15482 1.961316658 1.293861707 0.851762639 1.331945702 0.905406902 1.169414433 1.109498789 1.139660319 0.812344848 1 14.26306044 -6.996831047 24.81262435 1.463093724 1.091039814 0 0.323226244 114.7588162 898539.0199 0.059605119 0.078105871 1.01E-07 6.996831047 -0.37205391 DMDEPS(ph)PVPNVEEVTLPK ddPTM_HeLa_CUDC101_4h_R1 5 DMDEPSPVPNVEEVTLPK 18 0 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 DMDEPS(1)PVPNVEEVTLPK;DMDEPS(0.998)PVPNVEEVT(0.002)LPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK;DMDEPS(1)PVPNVEEVTLPK ;;;; 154.56 4.65E-05 165638900 37164.7 30347.9 28556.6 27907.3 29291.8 31920.8 29477.2 25615.9 31910.3 33595.5 TRUE FALSE FALSE 32808.3102 31282.88283 30100.45617 29045.48032 27131.00227 31311.96392 30614.14548 28531.91051 30594.94393 33395.67247 0.982412025 0.936734628 0.901328045 0.869737848 0.812410719 0.937605432 0.916709957 0.854359514 0.916134986 1 15.02737354 -6.996681485 1.655300316 0.993158874 0.880288999 0.446792685 0.040152692 0.141754111 0.764897744 0.005860067 0.007724765 1.01E-07 6.996681485 -0.112869875 EATPDGGEDSDS(ph) ddPTM_HeLa_CUDC101_4h_R1 1 EATPDGGEDSDS 12 0 D6RJC6;A0A087WYP9;A6NFV8;Q96EV8-3;Q96EV8 D6RJC6 DTNBP1 Dysbindin 1 0 EATPDGGEDS(0.363)DS(0.637) 193.96 4.73E-16 9836200 6073.3 5056.2 4912.9 4589.7 5487.4 4553.6 5083.5 4482 5452.2 5577 TRUE FALSE FALSE 5361.396981 5211.975529 5178.506235 4776.887804 5082.605434 4466.747667 5279.572298 4992.212763 5227.458008 5543.827756 0.967092994 0.940140235 0.934103017 0.86165877 0.916804356 0.805715449 0.952333393 0.900499255 0.942932977 1 12.43666672 -6.996562106 0.944162373 0.989457568 0.887343636 0.42597803 0.039805803 0.253705158 0.447527422 0.007471754 0.010264538 1.01E-07 6.996562106 -0.102113933 MESEGGADDS(ph)AEEGDLLDDDDNEDR ddPTM_HeLa_CUDC101_4h_R1 1 MESEGGADDSAEEGDLLDDDDNEDR 25 0 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2D6;G3V2Q1;P07910-4;B4DY08;G3V4W0;G3V5V7 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 MESEGGADDS(1)AEEGDLLDDDDNEDR 123.29 3.16E-09 6512400 1308.9 1058.8 699.68 1111 963.72 1172.7 1051 672.2 1150.4 1223.1 TRUE FALSE FALSE 1155.472726 1091.420373 737.5068172 1156.311382 892.6282956 1150.332701 1091.537422 748.7205309 1102.980025 1215.824947 0.950361094 0.897678877 0.60658964 0.951050877 0.734175013 0.946133491 0.897775148 0.615812772 0.907186539 1 10.24771981 -6.996331243 24.99638333 0.973794182 0.803667243 0.276743279 0.116406766 90.32855968 615430.0342 0.017320028 0.022705092 1.01E-07 6.996331243 -0.170126938 Y(ph)S(ph)EREEKTGES(ph)VQS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 YSEREEKTGESVQSR 15 2 Q6PIJ6-3;Q6PIJ6-2;Q6PIJ6 Q6PIJ6-3 FBXO38 F-box only protein 38 4 0 Y(0.991)S(0.983)EREEKT(0.027)GES(0.999)VQS(1)R;Y(1)S(1)EREEKT(0.001)GES(1)VQS(1)R ; 72.489 0.011588 6374100 2292.6 1739.64 1291.91 1520.1 1745.17 1855.4 1628.32 1498.28 1811.02 1848.2 TRUE FALSE FALSE 2023.864903 1793.236246 1361.754562 1582.096248 1616.432286 1820.011336 1691.124848 1668.838139 1736.368989 1837.206824 1.101598838 0.976066615 0.741209179 0.861142158 0.879831418 0.990640418 0.920486918 0.908356162 0.945113509 1 10.84329833 -6.996055409 24.99498547 1.047495945 0.886432302 0.403894871 0.070666663 66.73258569 422848.0646 0.011438894 0.014998192 1.01E-07 6.996055409 -0.161063642 LPSSPASPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 LPSSPASPSPK 11 0 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0;Q9H4G0-4;H7C2K6;X6RC15 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 LPS(0.004)S(0.102)PAS(0.361)PS(0.533)PK 101.72 0.012149 27551000 1952.5 1368.5 1094.5 1233.1 1240.9 1317.2 1267.6 1426.1 1548.2 1314.5 TRUE FALSE FALSE 1723.63091 1410.661863 1153.671981 1283.391148 1149.361279 1292.076605 1316.491757 1588.44146 1484.382541 1306.681296 1.31909052 1.079576074 0.882902346 0.982176107 0.879603376 0.988823066 1.007507922 1.215630364 1.135994328 1 10.35169159 -6.996006122 24.71432448 1.153242249 0.987104915 0.288907098 0.112413741 115.5077584 714759.0192 0.023298637 0.030545867 1.01E-07 6.996006122 -0.166137334 TKPLATTQPAKTS(ph)TSK ddPTM_HeLa_CUDC101_4h_R1 1 TKPLATTQPAKTSTSK 16 2 E7EVA0;P27816;P27816-6;P27816-5;P27816-4;H7C4C5;B5MEG9 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 TKPLATTQPAKT(0.097)S(0.715)T(0.165)S(0.023)K 97.45 0.0044099 16866000 1740.8 1552.9 2004 1592.7 2299.8 1668.6 1636.3 883.49 1583.3 1470.6 TRUE FALSE FALSE 1536.746063 1600.743008 2112.342302 1657.65719 2130.148336 1636.774235 1699.412639 984.0629304 1518.035704 1461.852806 1.051231736 1.095009704 1.444976056 1.133942613 1.457156512 1.119657348 1.162505987 0.673161434 1.038432664 1 10.51358234 -6.995621118 24.99259294 1.026767907 1.182810324 0.078965267 0.202972505 206.5662423 1178970.548 0.031661394 0.041522129 1.01E-07 6.995621118 0.156042417 PARPPS(ph)PTEQEGAVPR ddPTM_HeLa_CUDC101_4h_R1 1 PARPPSPTEQEGAVPR 16 1 Q8N8E2;Q8N8E2-2 Q8N8E2 ZNF513 Zinc finger protein 513 1 0 PARPPS(0.952)PT(0.048)EQEGAVPR 66.777 0.022264 4861700 685.32 577.62 437.78 740.09 556.32 429.19 578.85 633.75 721.11 620.82 TRUE FALSE FALSE 604.9878285 595.4157876 461.447711 770.2740691 515.2813819 421.0039158 601.1764384 705.8935383 691.3855406 617.127335 0.980329009 0.964818367 0.747735005 1.248160672 0.834967684 0.682199429 0.97415299 1.143837743 1.120328822 1 9.269424388 -6.994721872 24.93569786 0.989756341 0.931049804 0.042613261 0.164225903 483.3042376 2283276.901 0.02501639 0.032818619 1.01E-07 6.994721872 -0.058706537 AMGT(ph)LGVSLS(ph)S(ph)CS(ph)VPGSK ddPTM_HeLa_CUDC101_4h_R1 1 AMGTLGVSLSSCSVPGSK 18 0 H0YCY6;Q3LXA3-2;Q3LXA3 H0YCY6 TKFC;DAK Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing) 4 0 AMGT(0.984)LGVS(0.041)LS(0.948)S(0.934)CS(0.743)VPGS(0.349)K 52.862 0.00278 0 325.14 223.76 222.08 54.419 185.28 229.11 328.52 159.72 233.69 274.89 TRUE FALSE FALSE 287.0275821 230.6537804 234.0863166 56.63844204 171.6122635 224.7401085 341.1911264 177.9018792 224.0571993 273.2549421 1.050402163 0.844097379 0.856659041 0.207273258 0.628029862 0.822455787 1.248618319 0.651047252 0.819956622 1 8.094103778 -6.994691673 2.45533896 1.02346049 0.733841456 0.121390438 0.250017422 0.338187047 4.09111957 0.043142833 0.056293978 1.01E-07 6.994691673 -0.289619033 DSSLCVSGETLAAGTSS(ph)PKTEGK ddPTM_HeLa_CUDC101_4h_R1 1 DSSLCVSGETLAAGTSSPKTEGK 23 1 F8WF45;A0A2R8Y7M0;P82094;P82094-2 F8WF45 TMF1 TATA element modulatory factor 1 0 DSSLCVS(0.004)GET(0.01)LAAGT(0.186)S(0.186)S(0.59)PKT(0.024)EGK 55.972 0.0081846 24435000 2426.4 1958.4 1569.8 1881.1 2166.3 2048.9 2147.2 1541.7 2425.8 2025.9 TRUE FALSE FALSE 2141.98107 2018.735983 1654.668136 1957.819389 2006.496365 2009.820646 2230.018223 1717.200896 2325.807497 2013.849857 1.063625008 1.002426261 0.821644241 0.972177435 0.99634854 0.99799925 1.107340856 0.852695592 1.154906107 1 10.97574041 -6.994485755 24.99997629 1.030202017 0.964273106 0.220816337 0.08548102 224.996659 1020059.286 0.012248859 0.016072349 1.01E-07 6.994485755 -0.065928911 SKS(ph)PEILSSTK ddPTM_HeLa_CUDC101_4h_R1 1 SKSPEILSSTK 11 1 Q4KMZ1;Q4KMZ1-3 Q4KMZ1 IQCC IQ domain-containing protein C 1 0 S(0.023)KS(0.919)PEILS(0.057)STK 121.18 0.00050669 0 1154.5 1055.4 1177.7 1227.4 1063.8 988.75 1155.4 1160.4 1094.8 1068.8 TRUE FALSE FALSE 1019.17126 1087.915623 1241.370024 1277.458677 985.3255934 969.8912411 1199.964165 1292.495246 1049.671881 1062.44273 0.959271715 1.02397578 1.168411237 1.202378859 0.927415253 0.912888021 1.129438916 1.216531686 0.987979729 1 10.05316936 -6.99369549 24.49144142 0.981338592 1.084820843 0.207201903 0.097653712 164.9902486 640940.1681 0.016644929 0.021842361 1.01E-07 6.99369549 0.103482251 VSPGRT(ph)SDPNPAAPDSESVIVAMER ddPTM_HeLa_CUDC101_4h_R1 1 VSPGRTSDPNPAAPDSESVIVAMER 25 1 P42858 P42858 HTT Huntingtin 1 0 VS(0.14)PGRT(0.43)S(0.43)DPNPAAPDSESVIVAMER 74.627 0.00039386 12507000 2688 1940.8 2031.5 2051.8 1599.2 1813.1 1670.3 1693.4 2394.2 2654.8 TRUE FALSE FALSE 2372.916715 2000.593748 2141.329035 2135.481273 1481.230202 1778.518138 1734.724031 1886.169811 2295.510063 2639.009132 0.899169573 0.758085193 0.81141403 0.809198137 0.561282712 0.67393406 0.657339154 0.714726519 0.869837863 1 11.36578063 -6.993391533 0.540048 0.987401723 0.646848902 0.683441735 0.069179594 0.226955954 0.147318382 0.019217355 0.028441814 1.02E-07 6.993391533 -0.340552821 EEATYGVWAERDS(ph)DDERPSFGGKR ddPTM_HeLa_CUDC101_4h_R1 2 EEATYGVWAERDSDDERPSFGGKR 24 3 Q9UBB9;F6XM96;F6UKU9;F6SQZ1 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 EEAT(0.001)Y(0.001)GVWAERDS(0.993)DDERPS(0.006)FGGKR;EEAT(0.009)Y(0.029)GVWAERDS(0.962)DDERPSFGGKR ; 54.457 0.010816 44150000 1402.56 1501.08 1512.01 1845.18 2549.7 1839.3 1595.66 2094.7 1594.54 945.03 TRUE FALSE FALSE 1238.154043 1547.326496 1593.753834 1920.434416 2361.613711 1804.218417 1657.205141 2333.152181 1528.812386 939.4089195 1.318013931 1.647127745 1.696549608 2.044300811 2.513935797 1.920588978 1.76409347 2.483638523 1.627419492 1 9.875609482 -6.993389048 0.787865508 1.083329779 2.157374657 0.593993827 0.284153712 0.183443311 0.230243889 0.053236474 0.074995047 1.02E-07 6.993389048 1.074044878 ETPVPPAMS(ph)PWPEDPR ddPTM_HeLa_CUDC101_4h_R1 1 ETPVPPAMSPWPEDPR 16 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 ETPVPPAMS(1)PWPEDPR 102.63 0.00080764 0 708.04 441.66 231.91 434.78 431.84 392.91 447.61 238.86 405.26 404.01 TRUE FALSE FALSE 625.0446245 455.2670211 244.4477561 452.5122077 399.9840235 385.4158964 464.8744676 266.0508569 388.5550113 401.6069306 1.556359159 1.133613458 0.608674148 1.126753981 0.995958967 0.959684376 1.157535969 0.662465801 0.967500762 1 8.649640356 -6.993365728 24.98963361 1.267054701 0.938143339 0.186375812 0.227334481 168.973487 636476.4404 0.040839926 0.053603545 1.02E-07 6.993365728 -0.328911363 S(ph)SS(ph)PVTELASR ddPTM_HeLa_CUDC101_4h_R1 2 SSSPVTELASR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.995)S(0.182)S(0.772)PVT(0.051)ELASR;S(0.996)S(0.254)S(0.75)PVT(0.001)ELASR ; 134.49 0.016447 143485000 6091.4 4481.1 4194.1 4145.3 3939.4 4599.6 4152 3733.5 4974.5 5209.9 TRUE FALSE FALSE 5377.375326 4619.15738 4420.845732 4314.363252 3648.79831 4511.870293 4312.144031 4158.506549 4769.449004 5178.911283 1.038321576 0.891916684 0.853624534 0.833063749 0.704549298 0.871200537 0.832635238 0.802969258 0.920936611 1 12.33843313 -6.99282928 2.072715943 1.018554391 0.812080343 0.660393417 0.053079557 0.090506035 0.773722538 0.007589644 0.009950642 1.02E-07 6.99282928 -0.206474048 KPAAATVTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 KPAAATVTKK 10 2 P16403 P16403 HIST1H1C Histone H1.2 0 1 ; KPAAATVTK(1)K;KPAAATVTK(1)K 129.74 4.65E-06 0 8908.8 8341 17111.7 17083.9 10016.9 8856.1 10131.5 10199.6 4433.4 6121.4 FALSE TRUE FALSE 7864.523969 8597.976323 18036.81026 17780.65528 9277.973243 8687.184648 10522.27535 11360.68124 4250.653376 6084.989641 1.292446567 1.412981259 2.964148064 2.922051858 1.524731149 1.42764165 1.729218285 1.867000916 0.698547348 1 12.57103909 -6.984563343 24.98189554 1.14939519 2.053547961 0.467973111 0.51390013 185.3354386 299936.4294 0.087340602 0.114768045 1.04E-07 6.984563343 0.904152771 KPAEK(ac)PLPKPR ddPTM_HeLa_CUDC101_4h_R1 1 KPAEKPLPKPR 11 3 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WT54 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 0 1 KPAEK(1)PLPKPR 80.014 0.015918 0 1125.4 899.34 869.44 853.6 940.31 845.27 917.82 841.18 952.17 927.64 FALSE TRUE FALSE 993.482318 927.0475994 916.4445563 888.4134976 870.9452047 829.1478831 953.2206248 936.936531 912.9211496 922.122356 1.077386652 1.005341204 0.993842683 0.963444267 0.944500693 0.899173388 1.033724666 1.016065303 0.990021708 1 9.848814384 -6.786758165 2.459879852 1.036451367 0.970465151 0.186641491 0.041863812 0.267503548 3.323312877 0.007659366 0.010735512 1.63E-07 6.786758165 -0.065986216 EVSFQS(ph)TGESEWK ddPTM_HeLa_CUDC101_4h_R1 1 EVSFQSTGESEWK 13 0 Q07021;I3L3Q7;I3L3B0 Q07021 C1QBP "Complement component 1 Q subcomponent-binding protein, mitochondrial" 1 0 EVS(0.044)FQS(0.863)T(0.092)GES(0.001)EWK 205.27 1.08E-17 8236300 2205.4 1728.1 1385.9 1586.1 1737 2019.9 1573.4 1303.6 1798.7 1806.8 TRUE FALSE FALSE 1946.886355 1781.340713 1460.825946 1650.788014 1608.864971 1981.373773 1634.086565 1451.996555 1724.556825 1796.053073 1.083980415 0.991808505 0.81335344 0.91911984 0.895778078 1.103182196 0.909820867 0.808437443 0.960192575 1 10.81061427 -6.991906331 24.84896077 1.039564634 0.915922425 0.25049305 0.08211634 151.5624389 465320.0027 0.013128851 0.017238839 1.02E-07 6.991906331 -0.123642209 RFS(ph)FSQR ddPTM_HeLa_CUDC101_4h_R1 1 RFSFSQR 7 1 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 RFS(0.922)FS(0.078)QR 81.525 0.022976 41692000 3732 2952.9 2693.8 2822 3059.7 3011.6 2799 2844.5 3247.4 2968.2 TRUE FALSE FALSE 3294.540617 3043.875349 2839.434976 2937.093358 2833.992027 2954.158748 2906.958368 3168.306382 3113.540798 2950.545014 1.116587139 1.031631558 0.962342538 0.995440959 0.960497811 1.001224768 0.985227595 1.073803777 1.055242602 1 11.52676575 -6.991486594 21.12955042 1.056057891 0.994665652 0.329752128 0.039261571 31.95725677 79311.59729 0.008204837 0.010764615 1.02E-07 6.991486594 -0.061392239 WDS(ph)YENLSADGEVLHTQGPVDGSLYAK ddPTM_HeLa_CUDC101_4h_R1 2 WDSYENLSADGEVLHTQGPVDGSLYAK 27 0 Q68CZ2;E9PCX8;C9JHU5;Q68CZ2-3 Q68CZ2 TNS3 Tensin-3 1 0 WDS(0.592)Y(0.002)ENLS(0.088)ADGEVLHT(0.314)QGPVDGS(0.004)LY(0.001)AK;WDS(0.825)Y(0.01)ENLS(0.161)ADGEVLHT(0.004)QGPVDGSLYAK ; 62.594 0.0015964 49346600 3102.8 2275.73 1986.72 1772.81 2493 2443.63 2370.98 1927.94 2541.93 2147.68 TRUE FALSE FALSE 2739.094488 2345.842544 2094.128093 1845.112855 2309.096357 2397.021829 2462.429493 2147.408897 2437.15057 2134.905504 1.283005024 1.098803923 0.980899665 0.86425973 1.081591833 1.122776547 1.153413811 1.005856649 1.141573042 1 11.0599565 -6.991475003 23.57388219 1.136655111 1.038672476 0.193946266 0.098505139 170.6647687 471927.9439 0.021248361 0.027894251 1.02E-07 6.991475003 -0.097982635 KPASFMTSICDER ddPTM_HeLa_CUDC101_4h_R1 1 KPASFMTSICDER 13 1 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 0 83.617 0.02022 26929000 1991.2 1523.7 1322.9 1346.5 1428.2 1290 1375.5 1153.9 1395.6 839.2 FALSE FALSE TRUE 1757.794554 1570.643391 1394.419976 1401.41609 1322.844531 1265.395399 1428.553496 1285.255312 1338.072777 834.2084011 2.107140796 1.882794981 1.671548709 1.67993524 1.585748273 1.51688163 1.712465966 1.540688526 1.604002999 1 9.704264031 -9.515560244 1.282308354 1.001963435 1.751124076 0.161055986 0.246265852 0.224522381 0.663649892 0.145340376 0.03537801 3.05E-10 9.515560244 0.749160642 GDGSELLAGPGGPPAERTEDEEFLIQHLLQAPS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 GDGSELLAGPGGPPAERTEDEEFLIQHLLQAPSPPR 36 1 Q9ULL5;Q9ULL5-2 Q9ULL5 PRR12 Proline-rich protein 12 1 0 GDGSELLAGPGGPPAERT(0.002)EDEEFLIQHLLQAPS(0.998)PPR 51.97 0.0041592 6630600 398.12 405.76 480.9 371.53 493.91 452.16 372.7 464.53 319.74 450.63 TRUE FALSE FALSE 351.4529771 418.2609847 506.8989086 386.6825993 457.4752433 443.5358013 387.0751638 517.4102175 306.5601819 447.9496327 0.784581461 0.933723245 1.131598 0.863227852 1.021264914 0.99014659 0.864104211 1.155063381 0.684363061 1 8.807192715 -6.991460366 24.97156139 0.896215508 0.995011652 0.249982716 0.121492328 287.0045456 839252.716 0.018142876 0.023824221 1.02E-07 6.991460366 0.098796144 SLGEPAAGEGS(ph)AKR ddPTM_HeLa_CUDC101_4h_R1 1 SLGEPAAGEGSAKR 14 1 Q9BUL9 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 1 0 SLGEPAAGEGS(1)AKR 71.637 0.022957 9139500 1254.8 1208.7 1342.4 1343.3 1337.3 1468.2 1264.9 825.32 1279.8 1317.8 TRUE FALSE FALSE 1107.714246 1245.938614 1414.974205 1398.08558 1238.650043 1440.196531 1313.687617 919.2710927 1227.046102 1309.961667 0.845608138 0.951126011 1.080164588 1.067272131 0.945562053 1.099418836 1.00284432 0.701754193 0.936703824 1 10.35530888 -6.991270497 24.85235304 0.925580851 0.993226513 0.043590947 0.111218646 412.9012474 1175497.904 0.018768387 0.024644326 1.02E-07 6.991270497 0.067645662 KGS(ph)ISSTQDTPVAVEEDCSLASSK ddPTM_HeLa_CUDC101_4h_R1 1 KGSISSTQDTPVAVEEDCSLASSK 24 1 Q9BZ71-3;Q9BZ71 Q9BZ71-3 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 1 0 KGS(0.25)IS(0.25)S(0.25)T(0.25)QDT(0.001)PVAVEEDCSLASSK 104.54 1.74E-06 11527000 1892.6 1484.2 1117.7 1429.7 1409.3 1661.6 1277.1 1374.5 1841.9 1551 TRUE FALSE FALSE 1670.752297 1529.926443 1178.126243 1488.009346 1305.338747 1629.907748 1326.358175 1530.967524 1765.976102 1541.774583 1.083655364 0.992315258 0.764136506 0.965127693 0.846646949 1.057163457 0.860280218 0.992990506 1.145417833 1 10.59037613 -6.991250503 24.99842067 1.039424002 0.914362749 0.397915304 0.086008765 156.7722448 447915.7582 0.012221973 0.016049666 1.02E-07 6.991250503 -0.125061253 GGQGDPAVPTQQPADPST(ph)PEQQNS(ph)PSGSEQFVR ddPTM_HeLa_CUDC101_4h_R1 2 GGQGDPAVPTQQPADPSTPEQQNSPSGSEQFVR 33 0 H0Y704;O15231-2;O15231-3;H7BZT5;O15231-9;O15231-5;O15231-4;O15231-7;O15231;O15231-8;O15231-6 H0Y704 ZNF185 Zinc finger protein 185 2 0 GGQGDPAVPT(0.02)QQPADPS(0.455)T(0.526)PEQQNS(0.748)PS(0.204)GS(0.047)EQFVR;GGQGDPAVPT(0.417)QQPADPS(0.094)T(0.493)PEQQNS(0.86)PS(0.114)GS(0.022)EQFVR ; 96.164 5.90E-12 19841900 8456 6807.1 6134 6694.5 7297.8 7121.1 6793.5 6206.6 7788.5 6820 TRUE FALSE FALSE 7464.800498 7016.818683 6465.622594 6967.530646 6759.455833 6985.276882 7055.527571 6913.134256 7467.454733 6779.434337 1.101094889 1.035015362 0.95371122 1.027745133 0.997053072 1.030362791 1.040725114 1.019721397 1.101486402 1 12.72694919 -6.991249152 24.99628202 1.048808512 1.012190371 0.287285843 0.036032181 302.3812247 863731.5523 0.006971199 0.009153985 1.02E-07 6.991249152 -0.036618141 KPDK(ac)LTILR ddPTM_HeLa_CUDC101_4h_R1 1 KPDKLTILR 9 2 A6NGV6;P27540-3;P27540-4;P27540;A0A087WVE9;Q9HBZ2-2;Q9HBZ2;P27540-2 A6NGV6 ARNT;ARNT2 Aryl hydrocarbon receptor nuclear translocator;Aryl hydrocarbon receptor nuclear translocator 2 0 1 KPDK(1)LTILR 75.509 0.032928 0 1255.1 1133.9 1014.7 1512.3 1536.9 1060.6 755.36 858.15 679.51 467.58 FALSE TRUE FALSE 1107.979081 1168.834115 1069.557751 1573.978131 1423.525949 1040.370822 784.4944882 955.8383272 651.5003102 464.7988134 2.383782077 2.514709766 2.301119798 3.386364348 3.06267122 2.238325039 1.68781517 2.05645604 1.401682387 1 8.860462575 -8.974403942 0.705936763 0.954772756 2.482092743 0.52754388 0.469031391 0.453515723 0.401512372 0.388737197 0.110063409 1.06E-09 8.974403942 1.527319987 MS(ph)DDEDDDEEEYGKEEHEK ddPTM_HeLa_CUDC101_4h_R1 4 MSDDEDDDEEEYGKEEHEK 19 1 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 0 MS(1)DDEDDDEEEYGKEEHEK;MS(1)DDEDDDEEEYGKEEHEK;MS(1)DDEDDDEEEYGKEEHEK;MS(1)DDEDDDEEEYGKEEHEK ;;; 132.76 2.37E-05 86253000 14440.6 10654.4 9904.3 10066.7 9988.5 10833 9644.2 8172.5 12717 12546.8 TRUE FALSE FALSE 12747.89476 10982.64944 10439.75642 10477.26354 9251.668255 10626.37857 10016.18002 9102.824366 12192.79988 12472.17108 1.022107112 0.880572385 0.837044036 0.840051301 0.741784906 0.852007121 0.803082315 0.729850826 0.977600436 1 13.606425 -6.990955446 1.791386997 1.011662475 0.797183434 0.8373008 0.03922487 0.080082289 0.508333452 0.006516661 0.008586264 1.02E-07 6.990955446 -0.21447904 LESPTVSTLTPSS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 1 LESPTVSTLTPSSPGK 16 0 A0A087WTV6;A0A087WZR9;Q96C36 A0A087WTV6 PYCR2 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 2 1 0 LESPTVSTLT(0.002)PS(0.156)S(0.842)PGK 162.41 4.56E-05 13354000 5307.1 4063.8 3103.6 3898.1 3941.3 3998.6 3596.9 3460.5 4388 4438.1 TRUE FALSE FALSE 4685.009783 4189.000861 3271.390004 4057.081367 3650.558151 3922.333367 3735.633638 3854.429332 4207.124783 4411.701984 1.061950649 0.949520361 0.74152561 0.919618184 0.827471612 0.88907487 0.846755663 0.87368307 0.953628508 1 12.10711962 -6.99084553 9.331629106 1.028059064 0.852762086 0.645947227 0.051723508 0.055164998 43.73553765 0.007309899 0.009495278 1.02E-07 6.99084553 -0.175296978 KPEDWDEEMDGEWEPPVIQNPEYK ddPTM_HeLa_CUDC101_4h_R1 5 KPEDWDEEMDGEWEPPVIQNPEYK 24 1 P27797;K7EJB9;K7EL50 P27797 CALR Calreticulin 0 0 ;;;; ;;;; 131.41 6.16E-09 323990000 15552.3 13194.5 13156 13463.5 16363.5 14179.1 13690 13914.5 15421 14415.7 FALSE FALSE TRUE 13729.28297 13601.00691 13867.25315 14012.59972 15156.39721 13908.65729 14218.02789 15498.47044 14785.33985 14329.95478 0.958082784 0.949131181 0.967710881 0.97785373 1.057672368 0.970600222 0.992189306 1.081543569 1.031778543 1 13.80674644 -5.888122125 11.91663497 0.975886804 1.019183846 0.253568993 0.036420255 0.423395386 43.02549998 0.004885725 0.008859231 1.29E-06 5.888122125 0.043297042 EMS(ph)GSTSELLIK ddPTM_HeLa_CUDC101_4h_R1 1 EMSGSTSELLIK 12 0 Q9NS91;F8WE49 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 EMS(0.92)GS(0.063)T(0.015)S(0.003)ELLIK 80.312 0.034527 5220800 828.72 869.98 1098.1 1288.3 918.74 753.61 840.15 1015.3 783.46 930.7 TRUE FALSE FALSE 731.5786979 896.7830526 1157.466608 1340.842443 850.9663806 739.2361448 872.5548669 1130.877648 751.1654472 925.164155 0.790755558 0.969323171 1.251093226 1.449302197 0.919800422 0.79903241 0.943135185 1.222353505 0.811926665 1 9.85356556 -6.990513627 24.24025741 0.900076919 1.086909922 0.235827987 0.183794927 201.1036208 513870.5155 0.032639099 0.042862483 1.02E-07 6.990513627 0.186833003 KPEESLGK(ac)GAAQENGAPECSPR ddPTM_HeLa_CUDC101_4h_R1 1 KPEESLGKGAAQENGAPECSPR 22 2 Q6IE81-2;Q6IE81;Q6IE81-3 Q6IE81-2 JADE1 Protein Jade-1 0 1 K(0.014)PEESLGK(0.986)GAAQENGAPECSPR 144.5 1.13E-06 7489800 1054.3 1273.1 1426.6 2267.9 1046.3 1160.9 1537.5 994.93 1217 762.93 FALSE TRUE FALSE 930.7165522 1312.322702 1503.726311 2360.394765 969.1165335 1138.757767 1596.80189 1108.18881 1166.834745 758.3920584 1.227223495 1.730401429 1.982782249 3.11236746 1.277856912 1.501542314 2.105509772 1.461234723 1.538564034 1 9.566800047 -7.253850784 2.392007306 1.09245519 1.921419354 0.240672914 0.497068659 0.229116857 2.502387566 0.085383977 0.101475164 5.57E-08 7.253850784 0.828964163 KPEK(ac)PLFSSASPQDSSPR ddPTM_HeLa_CUDC101_4h_R1 2 KPEKPLFSSASPQDSSPR 18 2 Q5VW31;O00712;O00712-4;A0A1B0GW37;U3KQE8;A0A0A0MRX8;A0A1B0GU97;A0A2R8Y7V8;Q5VW30;Q5VW27;A0A1B0GWI9;A0A1B0GWJ4;A0A1B0GWB8;A0A1B0GVN4;Q5VW26;O00712-5;O00712-6 Q5VW31 NFIB Nuclear factor 1 B-type;Nuclear factor 1 0 1 ; KPEK(1)PLFSSASPQDSSPR;K(0.001)PEK(0.999)PLFSSASPQDSSPR 252.79 1.04E-51 5670500 2362.46 2241.64 2138.34 2110.42 2385.15 2224.4 2253.22 2213.78 2137.92 2090.34 FALSE TRUE FALSE 2085.53602 2310.702271 2253.945129 2196.49205 2209.202236 2181.973276 2340.12745 2465.787767 2049.794033 2077.906565 1.003671703 1.11203377 1.084719191 1.057069691 1.063186514 1.050082479 1.126194743 1.186669222 0.986470743 1 11.02091507 -1 0.196694196 0.98569659 1.812778575 0.672799129 0.034105964 23.42490276 0.266538097 0.037157704 5.985832734 0.1 1 0.827081985 SDS(ph)PVPTAPTSGGPK ddPTM_HeLa_CUDC101_4h_R1 1 SDSPVPTAPTSGGPK 15 0 B4E349;F5H6D8;B4DTN4;Q86U44 B4E349 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 1 0 S(0.064)DS(0.936)PVPTAPTSGGPK 196.18 3.16E-16 29281000 4341 2993.6 2861.9 2730.1 2675.3 2763.7 2484.2 2358.5 3257.3 3998.7 TRUE FALSE FALSE 3832.154561 3085.829268 3016.622971 2841.445278 2477.948449 2710.987027 2580.016426 2626.982107 3123.032715 3974.915555 0.964084522 0.776325742 0.758914983 0.714844187 0.623396501 0.682023804 0.649074525 0.660890042 0.785685299 1 11.9567085 -6.990300777 1.082297465 0.992306046 0.659011167 0.658555145 0.071341703 0.055501022 0.127661128 0.005622332 0.007638326 1.02E-07 6.990300777 -0.333294879 SVGDES(ph)WEQTQEGDVGALYHEQLALK ddPTM_HeLa_CUDC101_4h_R1 2 SVGDESWEQTQEGDVGALYHEQLALK 26 0 O75691 O75691 UTP20 Small subunit processome component 20 homolog 1 0 S(0.009)VGDES(0.495)WEQT(0.495)QEGDVGALYHEQLALK;S(0.049)VGDES(0.939)WEQT(0.012)QEGDVGALYHEQLALK ; 134.63 3.17E-11 21467000 3851.3 2738.1 2063.05 2267.17 2840.7 3185.8 2824.7 2268.77 2910.9 2502 TRUE FALSE FALSE 3399.856452 2822.457616 2174.584723 2359.634992 2631.14722 3125.036173 2933.649625 2527.037606 2790.91147 2487.117993 1.366986392 1.134830605 0.874339187 0.948742681 1.05791009 1.256488909 1.179537776 1.016050551 1.122146789 1 11.28025924 -6.990291923 24.97384366 1.177383842 1.060460707 0.122626851 0.131214556 400.7542955 1030928.483 0.028038134 0.036824113 1.02E-07 6.990291923 -0.116923136 KPFEEHWR ddPTM_HeLa_CUDC101_4h_R1 2 KPFEEHWR 8 1 D6RFM5;P31040-2;P31040;A0A087X1I3;P31040-3 D6RFM5 SDHA "Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial" 0 0 ; ; 84.615 0.024895 81898000 9635.3 6765 5764.9 7403.9 6526.4 6322.2 5335 5152.5 5155.3 4729 FALSE FALSE TRUE 8505.86474 6973.421632 6076.567932 7705.863044 6044.960474 6201.614569 5540.772737 5739.039773 4942.796352 4700.871698 1.809422866 1.483431602 1.29264705 1.639241302 1.285923306 1.319247784 1.178669211 1.220845865 1.051463786 1 12.19871259 -5.147336055 1.992553883 1.407493334 1.204431016 0.05743005 0.232547494 0.81504212 6.163933689 0.045424027 0.158945902 7.12E-06 5.147336055 -0.203062318 SISASKAS(ph)PPGDLQNPK ddPTM_HeLa_CUDC101_4h_R1 1 SISASKASPPGDLQNPK 17 1 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 SIS(0.004)AS(0.004)KAS(0.992)PPGDLQNPK 108.13 0.00070321 273340000 3923.6 3518.9 3769 3584.7 4445.2 3087.6 3640 3588.3 4214.2 3657.2 TRUE FALSE FALSE 3463.681556 3627.313138 3972.763541 3730.89956 4117.286452 3028.709174 3780.396019 3996.777568 4040.488892 3635.446812 0.952752642 0.997762676 1.092785494 1.026256126 1.132539318 0.833105071 1.039871085 1.099391017 1.111414663 1 11.82791697 -6.990235074 24.855353 0.977560793 1.033090175 0 0.087733695 345.2115744 878687.0103 0.012128232 0.015928947 1.02E-07 6.990235074 0.055529382 KPGMFFNPEESELDLTYGNR ddPTM_HeLa_CUDC101_4h_R1 2 KPGMFFNPEESELDLTYGNR 20 1 P11413-3;P11413;P11413-2 P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 167.93 4.53E-07 69794000 5792.7 4797.1 4920.1 4825.3 5732.8 4853.1 4768.3 4684.4 5419.4 5366.6 FALSE FALSE TRUE 5113.688487 4944.892965 5186.095488 5022.096591 5309.902765 4760.535203 4952.214928 5217.653161 5196.010038 5334.679225 0.958574691 0.926933515 0.972147578 0.941405543 0.995355586 0.892375156 0.928306037 0.978063149 0.974006087 1 12.38118581 -8.991373042 0.401227597 1.0131063 0.943569079 0.186818103 0.029124438 1.680725964 0.416542309 0.04969347 0.010162081 1.02E-09 8.991373042 -0.069537221 GDS(ph)ES(ph)EEDEQDSEEVR ddPTM_HeLa_CUDC101_4h_R1 1 GDSESEEDEQDSEEVR 16 0 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 0 GDS(0.999)ES(0.999)EEDEQDS(0.002)EEVR 174.39 4.31E-06 9198000 4396.4 3651.1 3012.6 3133.2 3777.3 3809.2 3476.7 3390.3 4181.4 3955.5 TRUE FALSE FALSE 3881.060657 3763.586063 3175.470269 3260.985439 3498.656104 3736.545857 3610.797484 3776.238048 4009.040922 3931.97251 0.987051829 0.95717507 0.807602357 0.829351027 0.889796685 0.950298062 0.918317072 0.96039279 1.019600445 1 11.94103752 -6.989593437 24.9620005 0.992739687 0.892492248 0.542493608 0.045415696 131.8497826 316263.8601 0.007750468 0.01018052 1.02E-07 6.989593437 -0.100247439 ILEQQNSSRT(ph)LEK ddPTM_HeLa_CUDC101_4h_R1 3 ILEQQNSSRTLEK 13 1 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;Q5JXL7 G3V1Q4 SEPT7;DKFZp586I031 Septin-7 1 0 ILEQQNS(0.004)S(0.084)RT(0.912)LEK;ILEQQNS(0.009)S(0.009)RT(0.981)LEK;ILEQQNS(0.004)S(0.046)RT(0.95)LEK ;; 120.9 0.022074 339694000 9546 8340.5 8941.7 8741.4 11116.4 9801.6 8353.5 7562.7 7136 8150.2 TRUE FALSE FALSE 8427.032351 8597.460919 9425.115349 9097.912076 10296.36532 9614.650811 8675.697293 8423.607199 6841.85106 8101.722248 1.040153204 1.061189295 1.163347133 1.122960254 1.270885992 1.186741598 1.070846053 1.039730435 0.844493411 1 12.98401291 -6.989551164 2.062850752 1.017753328 1.146799705 0.455471745 0.081550832 0.214201911 1.81480802 0.011197972 0.014701466 1.02E-07 6.989551164 0.129046377 GIST(ph)NY(ph)HASRK ddPTM_HeLa_CUDC101_4h_R1 1 GISTNYHASRK 11 1 Q58FF3 Q58FF3 HSP90B2P Putative endoplasmin-like protein 2 0 GIS(0.177)T(0.828)NY(0.99)HAS(0.006)RK 56.205 0.031026 23646000 186.53 227.68 341.53 199.17 256.06 256.29 237.3 267.63 223.4 271.6 TRUE FALSE FALSE 164.6652362 234.6945509 359.9941449 207.2930135 237.1709639 251.4016953 246.4527405 298.0959174 214.1913574 269.9845111 0.609906233 0.869288945 1.333388139 0.767795947 0.878461372 0.931170808 0.912840294 1.104122293 0.793346835 1 8.076732833 -6.988910022 24.998243 0.811778953 0.978178394 0.204515092 0.167104269 340.9648347 768575.7438 0.031882955 0.041882304 1.03E-07 6.988910022 0.166399442 AGKS(ph)GTSTPT(ph)TPGSTAITPGTPPSYSSR ddPTM_HeLa_CUDC101_4h_R1 1 AGKSGTSTPTTPGSTAITPGTPPSYSSR 28 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77 MAP2 Microtubule-associated protein 2 2 0 AGKS(0.492)GT(0.209)S(0.209)T(0.21)PT(0.609)T(0.237)PGS(0.03)T(0.003)AITPGTPPSYSSR 68.024 0.00025119 0 622.05 828.42 1071.5 850.01 1064.2 954.49 908.45 898.03 750.04 1021.2 TRUE FALSE FALSE 549.134242 853.9426383 1129.428531 884.6770819 985.6960862 936.2846935 943.4892208 1000.258105 719.1230337 1015.125857 0.540951881 0.841218488 1.11259951 0.871494974 0.971008747 0.922333607 0.929430784 0.985353785 0.708407759 1 9.987442891 -6.988791932 24.46132182 0.77837769 0.959364628 0.390654958 0.120276188 216.7403018 473027.4259 0.028503272 0.037441126 1.03E-07 6.988791932 0.180986938 TGSSS(ph)PPGGPPKPGSQLDSMLGSLQSDLNK ddPTM_HeLa_CUDC101_4h_R1 2 TGSSSPPGGPPKPGSQLDSMLGSLQSDLNK 30 1 F5GZ78;A0A1B0GTU4;P49023;P49023-2;P49023-3;P49023-4 F5GZ78 PXN Paxillin 1 0 T(0.047)GS(0.053)S(0.143)S(0.4)PPGGPPKPGS(0.342)QLDS(0.014)MLGS(0.002)LQSDLNK;T(0.129)GS(0.044)S(0.147)S(0.669)PPGGPPKPGS(0.009)QLDS(0.001)MLGSLQSDLNK ; 72.052 2.46E-05 542162000 3679 3042.93 2472.16 2738.35 3116.29 2959.97 2892.09 3209.59 3006.8 3236.27 TRUE FALSE FALSE 3247.753197 3136.679067 2605.812447 2850.031749 2886.407495 2903.513504 3003.63888 3574.956752 2882.858431 3217.020522 1.009553149 0.975026129 0.810008027 0.885922775 0.897230054 0.902547399 0.933671035 1.111263272 0.896126839 1 11.65150942 -6.988083558 24.99395882 1.003867975 0.917763876 0.020952139 0.079138389 240.4836094 504396.575 0.011370664 0.014937464 1.03E-07 6.988083558 -0.0861041 SSPGQT(ph)PEEGAQALAEFAALHGPALR ddPTM_HeLa_CUDC101_4h_R1 1 SSPGQTPEEGAQALAEFAALHGPALR 26 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 1 0 S(0.266)S(0.266)PGQT(0.468)PEEGAQALAEFAALHGPALR 157.38 4.89E-11 4038200 674.94 535.34 420.63 450.61 586.79 513.71 480.79 476.24 528.44 568.25 TRUE FALSE FALSE 595.8245563 551.8331909 443.3705301 468.9878235 543.5036708 503.9118376 499.3342314 530.4532366 506.6574795 564.8700237 1.05479939 0.97692065 0.784907167 0.830257942 0.962174744 0.89208458 0.883980757 0.939071316 0.896945241 1 9.141775132 -6.988031762 23.77969679 1.025350259 0.883656428 0.321534872 0.063172482 59.10946321 117443.6138 0.008243597 0.010828669 1.03E-07 6.988031762 -0.141693831 KPIVLK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 KPIVLKR 7 2 H0YCL8;B5MBX0;Q96FF9 H0YCL8 CDCA5 Sororin 0 1 KPIVLK(1)R 68.915 0.039329 0 781.15 751.5 668.67 1079.7 1059.5 892.86 740.69 629.35 504.65 330.04 FALSE TRUE FALSE 689.5847811 774.6528243 704.8203228 1123.734833 981.3427958 875.8301831 769.2586614 700.9926601 483.8481134 328.0769074 2.101899785 2.361192778 2.148338718 3.425217708 2.99119741 2.669588024 2.344751014 2.136671751 1.474800885 1 8.357890239 -8.293570835 0.544598109 0.999498323 2.675137584 0.649533421 0.389737589 0.337090134 0.2196426 0.250435548 0.11950915 5.09E-09 8.293570835 1.675639261 RTPS(ph)DDEEDNLFAPPK ddPTM_HeLa_CUDC101_4h_R1 4 RTPSDDEEDNLFAPPK 16 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 0 RT(0.039)PS(0.961)DDEEDNLFAPPK;RT(0.256)PS(0.744)DDEEDNLFAPPK;RT(0.095)PS(0.905)DDEEDNLFAPPK;RT(0.009)PS(0.991)DDEEDNLFAPPK ;;; 156.29 0.00018831 740191000 8805.6 8584.8 7149.5 7850.2 9303.8 8138.4 8407.8 7435.1 9250.8 7712.6 TRUE FALSE FALSE 7773.420916 8849.287513 7536.023596 8170.365087 8617.47721 7983.173579 8732.091662 8281.48173 8869.478109 7666.725112 1.013916738 1.154246094 0.982952106 1.06569167 1.124010198 1.041275572 1.138959795 1.080185035 1.15687963 1 12.90439474 -6.987638234 0.439718249 0.995221923 1.103449506 0 0.070251143 0.762053457 0.356387821 0.020349617 0.030628397 1.03E-07 6.987638234 0.108227583 KPLFHGDSEIDQLFR ddPTM_HeLa_CUDC101_4h_R1 2 KPLFHGDSEIDQLFR 15 1 A0A087WZZ9;P06493;A0A024QZP7;P06493-2 A0A087WZZ9 CDK1;CDC2 Cyclin-dependent kinase 1 0 0 ; ; 155.39 7.39E-05 40099000 18894.9 13206.4 12536 12837.5 17374.2 14021.6 13670.3 13371.3 14149 13201 FALSE FALSE TRUE 16680.06846 13613.27353 13213.73408 13361.06874 16092.53988 13754.16134 14197.56805 14893.43474 13565.77223 13122.47986 1.271106425 1.037400984 1.006954037 1.018181691 1.226333745 1.048137355 1.081927212 1.134955808 1.033781143 1 13.67975276 SPS(ph)PAHLPDDPK ddPTM_HeLa_CUDC101_4h_R1 1 SPSPAHLPDDPK 12 0 Q92615;H0Y4V9;A0A087X183;H0Y641 Q92615 LARP4B La-related protein 4B 1 0 S(0.007)PS(0.993)PAHLPDDPK 98 0.013287 372770000 3192 2837.7 2659.5 2371.9 2960.6 2423.2 2450.2 2518.2 2855 3053 TRUE FALSE FALSE 2817.838599 2925.126173 2803.280615 2468.636334 2742.202436 2376.981497 2544.705035 2804.861709 2737.315692 3034.84062 0.928496403 0.963848366 0.923699451 0.813431953 0.903573788 0.78323108 0.838497092 0.924220432 0.901963574 1 11.56740504 -6.987524554 0.505813773 0.986357307 0.841764157 0.335665034 0.052144542 0.449700466 0.262119307 0.01603496 0.023985955 1.03E-07 6.987524554 -0.14459315 EDQEAAELLS(ph)EPEEESER ddPTM_HeLa_CUDC101_4h_R1 2 EDQEAAELLSEPEEESER 18 0 A0A0A0MTR7;A0A0A0MTC1;Q63HN8;Q63HN8-4 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 1 0 EDQEAAELLS(1)EPEEESER;EDQEAAELLS(0.998)EPEEES(0.002)ER ; 159.04 3.09E-05 26016000 4679.4 2970.39 2484.78 3010.03 2866.61 2569.49 2414.87 1900.43 2707.01 3122.88 TRUE FALSE FALSE 4130.887826 3061.904195 2619.114723 3132.792034 2655.145891 2520.481259 2508.012345 2116.767269 2595.425902 3104.304971 1.330696521 0.986341298 0.843704065 1.009176632 0.855310904 0.811930942 0.807914289 0.681881223 0.836073107 1 11.60005458 -6.987317632 4.279084806 1.156844778 0.843777729 0.246904656 0.14657544 0.125767546 5.527231122 0.023716322 0.030711425 1.03E-07 6.987317632 -0.313067049 HIKEEPLS(ph)EEEPCTSTAIASPEK ddPTM_HeLa_CUDC101_4h_R1 1 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 HIKEEPLS(0.988)EEEPCT(0.008)S(0.003)T(0.001)AIASPEK 67.552 0.0017185 458590000 1486.8 1325 1461.3 1367.9 1401.7 1711.2 1383 1209.1 1257.1 1300.9 TRUE FALSE FALSE 1312.519558 1365.821679 1540.302298 1423.688875 1298.299384 1678.561711 1436.342773 1346.739057 1205.281806 1293.162189 1.014969019 1.056187454 1.191113003 1.100936052 1.003972583 1.298028759 1.110721289 1.041430896 0.932042258 1 10.33668751 -6.987317368 5.057263082 1.008123536 1.125459878 0.381087065 0.079205753 0.149313969 10.93091472 0.011912154 0.015416919 1.03E-07 6.987317368 0.117336342 GLDS(ph)MRELPPLSPS(ph)LSRR ddPTM_HeLa_CUDC101_4h_R1 1 GLDSMRELPPLSPSLSRR 18 2 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 2 0 GLDS(0.999)MRELPPLS(0.008)PS(0.918)LS(0.075)RR 67.43 0.0018537 0 1030.7 732.87 507.33 573.52 773.34 720.93 537.46 676.87 944.07 781.39 TRUE FALSE FALSE 909.8829084 755.448856 534.7577944 596.9106246 716.2922489 707.1794614 558.1900122 753.9221448 905.155035 776.7422575 1.171409048 0.972586271 0.688462343 0.768479658 0.922174945 0.910442884 0.718629644 0.97062074 1.16532225 1 9.601292146 -6.987100019 9.363582704 1.080512469 0.829727388 0.630684585 0.096386242 0.106704217 66.45180157 0.016480472 0.021470559 1.03E-07 6.987100019 -0.25078508 EDEGPPGYPEPLAPGHGS(ph)PFPSLSK ddPTM_HeLa_CUDC101_4h_R1 1 EDEGPPGYPEPLAPGHGSPFPSLSK 25 0 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 EDEGPPGY(0.002)PEPLAPGHGS(0.924)PFPS(0.065)LS(0.009)K 100.38 2.84E-06 74877000 3394.2 2509.1 2111 1981.8 2459.6 2394.1 2329.8 1728 2308.4 2908.7 TRUE FALSE FALSE 2996.337021 2586.402397 2225.127045 2062.62637 2278.160208 2348.436531 2419.661166 1924.708535 2213.246775 2891.398923 1.036293193 0.89451593 0.76956764 0.713366237 0.787909337 0.812214639 0.836847917 0.665666892 0.765458809 1 11.49755195 -6.986843184 2.804307078 1.016979278 0.768228877 0.326179803 0.092195838 0.067178198 1.074334079 0.007862624 0.010256462 1.03E-07 6.986843184 -0.248750402 S(ph)LLDASEEAIK ddPTM_HeLa_CUDC101_4h_R1 2 SLLDASEEAIK 11 0 P18206-2;P18206 P18206-2 VCL Vinculin 1 0 S(1)LLDASEEAIK;S(1)LLDASEEAIK ; 166.7 2.53E-05 9159700 6137.2 3814.2 2885.7 3594.9 2010.46 3741.1 3212.7 2579.1 3303.5 4356.9 TRUE FALSE FALSE 5417.806719 3931.710981 3041.709671 3741.51556 1862.152371 3669.744751 3336.614915 2872.694319 3167.328332 4330.984965 1.250941013 0.907809889 0.702313607 0.863894839 0.429960479 0.847323364 0.770405564 0.663288915 0.731318247 1 12.08047945 -6.986406454 3.682400435 1.118152472 0.716923039 0.277853958 0.176062863 0.105863248 3.131910731 0.023219709 0.030132194 1.03E-07 6.986406454 -0.401229434 KYHS(ph)Y(ph)LERK ddPTM_HeLa_CUDC101_4h_R1 1 KYHSYLERK 9 2 P12525 P12525 MYCLP1 Putative myc-like protein MYCLP1 2 0 KYHS(1)Y(1)LERK 70.54 0.033913 4823100 901.09 1229.2 911.8 1165.4 2008.7 1804.4 1496.5 1096.8 1268 457.06 TRUE FALSE FALSE 795.4655962 1267.070195 961.094666 1212.930049 1860.522203 1769.984076 1554.220506 1221.655279 1215.732503 454.3413868 1.750810336 2.788806461 2.115357953 2.669644643 4.094987287 3.895713945 3.420820888 2.688848769 2.675812811 1 8.827632919 -6.986341107 0.596662444 1.135439737 3.554472454 0.415619416 0.685304098 0.243569413 0.186625313 0.147900681 0.217687524 1.03E-07 6.986341107 2.419032717 HGS(ph)GADSDY(ph)ENTQSGDPLLGLEGKR ddPTM_HeLa_CUDC101_4h_R1 1 HGSGADSDYENTQSGDPLLGLEGKR 25 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 2 0 HGS(0.928)GADS(0.355)DY(0.705)ENT(0.011)QS(0.002)GDPLLGLEGKR 92.664 9.92E-06 12568000 1646.6 1877.6 1834.8 2066.5 2903.8 2293.5 2278 1629.1 1782 1318.7 TRUE FALSE FALSE 1453.588044 1935.44663 1933.994838 2150.780802 2689.592459 2249.755309 2365.863223 1814.550159 1708.545206 1310.856314 1.108884344 1.476475042 1.475367527 1.640744893 2.051782816 1.716248597 1.804822694 1.384247945 1.303380994 1 10.35629384 -6.986187016 1.133234734 1.03242205 1.740294269 0.631872343 0.184031731 0.143091291 0.360497882 0.031346706 0.04249334 1.03E-07 6.986187016 0.70787222 APAPLGTVADSLRAS(ph)DGQLQAK ddPTM_HeLa_CUDC101_4h_R1 2 APAPLGTVADSLRASDGQLQAK 22 1 Q9BRG2;Q9BRG2-2 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 0 APAPLGT(0.03)VADS(0.322)LRAS(0.648)DGQLQAK;APAPLGTVADS(0.012)LRAS(0.988)DGQLQAK ; 77.037 0.001011 28519000 1878.97 1553.44 1251.73 1358.11 1371.64 1523.07 1685.52 1541.53 1527.44 1657.86 TRUE FALSE FALSE 1658.719985 1601.299645 1319.40231 1413.499596 1270.45685 1494.019977 1750.531071 1717.011544 1464.478277 1647.998975 1.006505471 0.97166301 0.800608696 0.857706599 0.770908762 0.906566084 1.062216116 1.041876585 0.888640284 1 10.68649963 -6.986038791 24.73775438 1.002335836 0.903721563 0.048536158 0.093570201 257.7038823 456621.4964 0.015111583 0.019855252 1.03E-07 6.986038791 -0.098614273 ESSKELESPLT(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 2 ESSKELESPLTPGK 14 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 ESSKELES(0.008)PLT(0.992)PGK;ESSKELES(0.004)PLT(0.996)PGK ; 90.385 0.016812 55147000 9428.7 8711.5 9538.6 8574.4 10087 9096.3 8706.5 9297.8 10873.8 9299.2 TRUE FALSE FALSE 8323.482079 8979.890989 10054.28557 8924.101094 9342.902106 8922.803233 9042.312621 10356.22397 10425.57736 9243.887945 0.900430872 0.971440918 1.087668482 0.96540559 1.010711311 0.965265188 0.978193664 1.120332054 1.127834676 1 13.17428406 -6.985811604 24.86723617 0.952084117 1.015058924 0 0.076504671 264.485816 463548.3184 0.009294093 0.012211757 1.03E-07 6.985811604 0.062974807 KLNERSLAFYAT(ph)CDAPVDNAGFLY(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 KLNERSLAFYATCDAPVDNAGFLYK 25 2 F8W0V2;F8VZK7;Q8N4B1-3;Q8N4B1 F8W0V2 FAM109A Sesquipedalian-1 2 0 KLNERS(0.019)LAFY(0.114)AT(0.868)CDAPVDNAGFLY(0.999)K 43.497 0.003276 0 729.07 563.01 488.76 584.07 569.84 493.95 500.29 638.11 834.55 543.55 TRUE FALSE FALSE 643.6095198 580.3556708 515.183844 607.8908992 527.8040385 484.5287267 519.5863529 710.7498631 800.1494958 540.3169404 1.191170351 1.074102304 0.95348453 1.125063557 0.976841552 0.896749094 0.961632542 1.315431388 1.480889152 1 9.077662105 -6.983724992 24.41734166 1.092504445 1.028145059 0.055730965 0.170574442 467.5960383 701529.6165 0.020409205 0.026818574 1.04E-07 6.983724992 -0.064359386 SSATVTGEPPSYS(ph)SGSDSSK ddPTM_HeLa_CUDC101_4h_R1 1 SSATVTGEPPSYSSGSDSSK 20 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 SSATVTGEPPSYS(0.437)S(0.437)GS(0.103)DS(0.018)S(0.005)K 279.27 6.58E-126 0 1218.3 949.45 1213.5 1138.2 1102.4 1115.7 1232.4 889.63 1099.1 1213 TRUE FALSE FALSE 1075.492721 978.7014291 1279.105481 1184.620716 1021.078148 1094.419881 1279.934081 990.9018832 1053.794633 1205.785022 0.891944004 0.811671576 1.060807239 0.982447695 0.846816082 0.907640965 1.061494427 0.821789842 0.873949015 1 10.235757 -6.983134631 0.007614887 1.871451521 4.64E-07 0 0.090667169 6016.843694 33.21560459 4052.65968 4108.126835 1.04E-07 6.983134631 -1.871451058 AVTIANS(ph)PSKPSEK ddPTM_HeLa_CUDC101_4h_R1 2 AVTIANSPSKPSEK 14 1 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 0 AVT(0.013)IANS(0.909)PS(0.034)KPS(0.044)EK;AVT(0.001)IANS(0.982)PS(0.017)KPSEK ; 197.47 8.89E-16 357194000 10448.2 8122.7 8395 7674.4 8138.2 8448.4 7346.7 7043.3 8708.6 9811.4 TRUE FALSE FALSE 9223.477834 8372.950759 8848.859093 7987.395204 7537.8612 8287.260846 7630.06468 7845.080802 8349.627822 9753.041356 0.94570273 0.858496386 0.907292276 0.818964558 0.772872884 0.849710418 0.782326702 0.804372761 0.856105036 1 13.25163646 -6.983108711 0.593909679 0.991892316 0.792791542 0.450875067 0.051182392 0.16090219 0.122270883 0.008021814 0.011844006 1.04E-07 6.983108711 -0.199100773 DLTNNNIPHLLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 DLTNNNIPHLLSPK 14 0 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1;A0A1B0GTX4 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 1 0 DLTNNNIPHLLS(1)PK 143.28 0.00042505 12013000 1772.1 1654.5 1928.6 1739.4 2203.7 1647.6 1701.5 1463.7 1523.3 1766.2 TRUE FALSE FALSE 1564.377124 1705.473184 2032.86595 1810.34025 2041.137441 1616.174775 1767.127425 1630.321692 1460.508929 1755.694564 0.89103034 0.97139515 1.157869935 1.031124825 1.162581171 0.920532995 1.006511874 0.928590727 0.831869597 1 10.77782617 -6.982541381 24.99923159 0.947630021 1.036318777 0.267711279 0.087172587 295.7779063 423527.0482 0.013473216 0.017705179 1.04E-07 6.982541381 0.088688756 QENCGAQQVPAGPGTST(ph)PPS(ph)SPVR ddPTM_HeLa_CUDC101_4h_R1 1 QENCGAQQVPAGPGTSTPPSSPVR 24 0 Q96G46-2;Q96G46 Q96G46-2 DUS3L tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 2 0 QENCGAQQVPAGPGT(0.147)S(0.427)T(0.48)PPS(0.516)S(0.43)PVR 103.05 7.22E-06 17643000 5190.6 3913.2 3181.4 3625.9 4027.1 3725 3553.6 2515.5 4198.4 4346.3 TRUE FALSE FALSE 4582.165736 4033.761054 3353.396107 3773.779874 3730.028856 3653.951831 3690.663542 2801.854352 4025.340175 4320.448014 1.060576524 0.933644159 0.776168605 0.873469571 0.863343071 0.845734475 0.854231675 0.648510141 0.931695084 1 12.07696521 -6.98246709 3.871824604 1.028012708 0.819643984 0.585100426 0.070286256 0.088710994 2.965888499 0.010414233 0.013527723 1.04E-07 6.98246709 -0.208368724 EREPEAASSRGS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 2 EREPEAASSRGSPVR 15 2 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EREPEAAS(0.001)S(0.005)RGS(0.994)PVR;EREPEAAS(0.001)S(0.003)RGS(0.996)PVR ; 88.283 0.010706 42658000 3128.36 3010.01 3522.6 3322.28 3976.25 3168.02 3734.59 3334.4 3388.6 2763.85 TRUE FALSE FALSE 2761.658383 3102.74484 3713.042411 3457.776939 3682.929959 3107.595297 3878.634387 3713.974618 3248.920474 2747.410497 1.005185933 1.129334274 1.351469835 1.258558538 1.340509532 1.131099739 1.411741853 1.351809139 1.18253915 1 11.42385677 -6.982359294 3.013210133 1.002814901 1.303552228 0.582370327 0.09124655 0.077761057 1.451196154 0.011420138 0.014897284 1.04E-07 6.982359294 0.300737327 FLESAAADFS(ph)DEDEDDDVDGR ddPTM_HeLa_CUDC101_4h_R1 1 FLESAAADFSDEDEDDDVDGR 21 0 O43815-2;O43815 O43815-2 STRN Striatin 1 0 FLES(0.001)AAADFS(0.999)DEDEDDDVDGR 126.96 3.76E-07 3051600 3043.1 2402.7 1826.3 1846.2 1845.9 2292.3 1715.3 1556.4 2107.3 2950.7 TRUE FALSE FALSE 2686.392431 2476.724339 1925.035302 1921.496016 1709.731635 2248.578197 1781.459696 1733.574285 2020.436202 2933.149105 0.915873123 0.844390875 0.656303254 0.655096603 0.582899666 0.766608896 0.60735395 0.591028353 0.688828331 1 11.5182347 -6.981278153 1.425075057 0.967570384 0.637288647 0.450484065 0.102340863 0.088374255 0.35275069 0.009967134 0.013318712 1.04E-07 6.981278153 -0.330281737 FFIGGS(ph)LELEDLSYVRIPGSFKGLS(ph)S(ph)SK ddPTM_HeLa_CUDC101_4h_R1 1 FFIGGSLELEDLSYVRIPGSFKGLSSSK 28 2 Q9NXB0-2 Q9NXB0-2 3 0 FFIGGS(0.922)LELEDLS(0.05)Y(0.047)VRIPGS(0.144)FKGLS(0.612)S(0.612)S(0.612)K 43.888 0.018197 29253000 4155.7 2675.3 2970.1 2357.8 2239.3 2967.2 2445 1998.9 3233.4 3763.6 TRUE FALSE FALSE 3668.575146 2757.722822 3130.67259 2453.961275 2074.1113 2910.605604 2539.304469 2226.446696 3100.117883 3741.21394 0.980584165 0.737119787 0.83680662 0.655926476 0.554395267 0.777984272 0.678738107 0.59511344 0.828639563 1 11.86929075 -6.980774639 1.120841128 0.99819639 0.658302625 0.601270845 0.090278666 0.132205149 0.326063726 0.013823141 0.018808437 1.05E-07 6.980774639 -0.339893766 TVSGPGTPEPRPAT(ph)PGASSVEQLRK ddPTM_HeLa_CUDC101_4h_R1 3 TVSGPGTPEPRPATPGASSVEQLRK 25 2 Q9H3U1 Q9H3U1 UNC45A Protein unc-45 homolog A 1 0 TVSGPGT(0.001)PEPRPAT(0.987)PGAS(0.008)S(0.003)VEQLRK;TVSGPGT(0.019)PEPRPAT(0.971)PGAS(0.006)S(0.003)VEQLRK;TVSGPGT(0.003)PEPRPAT(0.809)PGAS(0.094)S(0.094)VEQLRK ;; 95.361 2.29E-05 209645000 10291.4 9999.5 9215 9631.4 12652.5 10205.2 9624.5 10619.2 9849.4 8643.3 TRUE FALSE FALSE 9085.057693 10307.57274 9713.190774 10024.21012 11719.15028 10010.55281 9995.720189 11828.0468 9443.403563 8591.889267 1.0573993 1.199686404 1.130506978 1.166706159 1.363978273 1.1651166 1.163390248 1.376652612 1.099106759 1 13.06875968 -6.980694894 0.5907389 1.005840058 1.262230649 0.506588023 0.079906548 0.327880354 0.24682888 0.021004747 0.031093538 1.05E-07 6.980694894 0.256390591 APEEGDAEVMQLGSSS(ph)PPPAR ddPTM_HeLa_CUDC101_4h_R1 3 APEEGDAEVMQLGSSSPPPAR 21 0 Q6NUJ5-2;Q6NUJ5 Q6NUJ5-2 PWWP2B PWWP domain-containing protein 2B 1 0 APEEGDAEVMQLGS(0.148)S(0.148)S(0.704)PPPAR;APEEGDAEVMQLGS(0.07)S(0.221)S(0.709)PPPAR;APEEGDAEVMQLGS(0.036)S(0.279)S(0.685)PPPAR ;; 215.06 1.73E-26 9542000 2307.8 1926.87 1909.11 1772.25 1938.4 1942.25 1953.25 1630.18 1872.25 2122.65 TRUE FALSE FALSE 2037.283182 1986.234581 2012.322261 1844.530015 1795.408094 1905.204817 2028.587507 1815.753102 1795.075063 2110.024383 0.965525896 0.941332525 0.953696212 0.874174739 0.850894477 0.902930237 0.96140477 0.860536549 0.850736644 1 11.04304396 -6.980504991 0.911259873 0.98869876 0.893904508 0 0.053946069 0.262175968 0.43230083 0.007036234 0.009797086 1.05E-07 6.980504991 -0.094794252 KPQAEK(ac)VDVIAGSSK ddPTM_HeLa_CUDC101_4h_R1 1 KPQAEKVDVIAGSSK 15 2 O60885;O60885-2;O60885-3 O60885 BRD4 Bromodomain-containing protein 4 0 1 K(0.04)PQAEK(0.96)VDVIAGSSK 109.35 0.013707 811470 1016.8 606.03 555.54 675.67 731.18 590.83 721.37 679.62 727.34 882.97 FALSE TRUE FALSE 897.6122454 624.701066 585.5741728 703.2267431 677.2423081 579.5609021 749.1934825 756.9851937 697.3587373 877.7180552 1.022665809 0.711733184 0.667155209 0.801198903 0.771594368 0.660304182 0.853569638 0.862446875 0.794513378 1 9.777613774 -7.266371627 24.98438813 1.010703304 0.759147282 0.364538742 0.094332394 140.0980073 709667.894 0.011226689 0.013051759 5.42E-08 7.266371627 -0.251556022 AS(ph)PFEEDQNR ddPTM_HeLa_CUDC101_4h_R1 2 ASPFEEDQNR 10 0 C9JW01;Q8TB72-2;Q8TB72-3;Q8TB72;A0A0A0MR59;Q8TB72-4;A0A0C4DG68 C9JW01 PUM2 Pumilio homolog 2 1 0 AS(1)PFEEDQNR;AS(1)PFEEDQNR ; 166.11 1.78E-05 25400000 2177.2 1847.5 1546.23 1493.09 1739.16 1691 1427.21 1443.82 2075.73 2096 TRUE FALSE FALSE 1921.991916 1904.419285 1629.823871 1553.984664 1610.865632 1658.746992 1482.257968 1608.178633 1990.167531 2083.532899 0.922467755 0.9140337 0.782240526 0.745841193 0.773141443 0.796122295 0.711415677 0.771851807 0.955188916 1 11.02481616 -6.980356041 0.890462778 0.976175064 0.750520336 0.897504054 0.030515029 0.112316965 0.17723602 0.007113522 0.009935147 1.05E-07 6.980356041 -0.225654728 KPRPSEGDEDCLPASK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 KPRPSEGDEDCLPASKK 17 3 Q5VU10;P78346;P78346-2 Q5VU10 RPP30 Ribonuclease P protein subunit p30 0 1 KPRPSEGDEDCLPASK(1)K 59.513 0.019686 7944800 2783.6 3025.6 3547.9 3163.8 3512.6 2991.1 3251.2 3231.6 2530.2 1475.9 FALSE TRUE FALSE 2457.310628 3118.81515 3739.710206 3292.833439 3253.482496 2934.049751 3376.599873 3599.472281 2425.904085 1467.121281 1.674919899 2.125805951 2.54901231 2.244418019 2.217596144 1.999868578 2.301513799 2.453425172 1.653512982 1 10.51877242 -7.863123052 0.715254885 1.091846454 2.302674828 0.693359407 0.244010407 0.143548846 0.162917909 0.067043838 0.052363978 1.37E-08 7.863123052 1.210828374 NSTDLDSAPEDPTS(ph)PKR ddPTM_HeLa_CUDC101_4h_R1 1 NSTDLDSAPEDPTSPKR 17 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L373;I3L135;I3L1Q4 I3L2J0 CIC Protein capicua homolog 1 0 NSTDLDSAPEDPT(0.044)S(0.956)PKR 58.082 0.029821 12129000 2874.4 1860.6 2103 1995.6 2215.7 1508.1 1950.2 1841.2 2663.7 2484.9 TRUE FALSE FALSE 2537.467189 1917.922881 2216.694541 2076.989194 2052.252225 1479.335505 2025.419867 2050.794766 2553.901159 2470.119704 1.027264867 0.776449367 0.897403692 0.840845563 0.830831081 0.598892233 0.819968305 0.830241045 1.033917973 1 11.27036524 -6.980293238 1.035970404 1.016530271 0.775784686 0.592289162 0.080204191 0.227454279 0.480529028 0.016303178 0.022363801 1.05E-07 6.980293238 -0.240745585 KWDGS(ph)EEDEDNSK ddPTM_HeLa_CUDC101_4h_R1 6 KWDGSEEDEDNSK 13 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK;KWDGS(0.983)EEDEDNS(0.017)K;KWDGS(0.999)EEDEDNS(0.001)K;KWDGS(1)EEDEDNSK ;;;;; 103.66 0.0089956 836649800 26461.8 23655.6 26384.4 23746.4 25381.7 24938.1 23467.2 24269.6 25427.3 24989 TRUE FALSE FALSE 23359.98792 24384.401 27810.82047 24714.88083 23509.34256 24462.44729 24372.33776 27032.35316 24379.17593 24840.36432 0.940404401 0.981644258 1.119581827 0.994948404 0.946416979 0.984786172 0.981158628 1.088243023 0.981433912 1 14.60039871 -6.979812279 24.9955887 0.971287438 1.014747545 0.148092107 0.050358622 380.05605 470568.1752 0.008556527 0.011244744 1.05E-07 6.979812279 0.043460107 SPS(ph)PPLPT(ph)HIPPEPPRTPPFPAK ddPTM_HeLa_CUDC101_4h_R1 1 SPSPPLPTHIPPEPPRTPPFPAK 23 1 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 2 0 S(0.518)PS(0.59)PPLPT(0.511)HIPPEPPRT(0.381)PPFPAK 66.702 0.0057349 29193000 1025.1 1027.6 1176.6 1176.6 1137.4 826.14 1145.1 1306.3 1158.4 1154.4 TRUE FALSE FALSE 904.939332 1059.259138 1240.210555 1224.586834 1053.496268 810.3827559 1189.266891 1455.003912 1110.650262 1147.533577 0.788595079 0.923074635 1.080761887 1.067146842 0.918052673 0.706195245 1.036367836 1.267940163 0.967858617 1 10.16432065 -6.979391351 23.02426008 0.897836471 0.998374779 0.081437765 0.143080708 194.796609 217627.1051 0.025331043 0.033288271 1.05E-07 6.979391351 0.100538308 GDAAS(ph)SPAPAASVGS(ph)SQGGAR ddPTM_HeLa_CUDC101_4h_R1 1 GDAASSPAPAASVGSSQGGAR 21 0 F8WCC1;E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2 F8WCC1 CHTF18 Chromosome transmission fidelity protein 18 homolog 2 0 GDAAS(0.759)S(0.241)PAPAAS(0.04)VGS(0.799)S(0.161)QGGAR 118.36 9.95E-06 13627000 1579.8 1239.4 876.1 1104.5 1326.1 1398.2 1219.5 730.99 1057.8 1252.7 TRUE FALSE FALSE 1394.618239 1277.584445 923.4646161 1149.546284 1228.276245 1371.531665 1266.536524 814.2029468 1014.197036 1245.248885 1.119951406 1.025967147 0.741590398 0.923145805 0.986370082 1.101411679 1.017095088 0.653847562 0.814453278 1 10.2822184 -6.978841027 24.98930621 1.057502457 0.919415068 0 0.146829175 284.9104656 336485.8534 0.020706053 0.027211805 1.05E-07 6.978841027 -0.138087389 APGYPS(ph)SPVTTASGTTLR ddPTM_HeLa_CUDC101_4h_R1 1 APGYPSSPVTTASGTTLR 18 0 Q9HCK8-2;Q9HCK8;H0YJG4;H0YJA4 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 APGYPS(0.769)S(0.176)PVT(0.043)T(0.011)ASGTTLR 202.01 4.47E-17 133130000 2390.4 1998.2 1654 1935.9 1981.4 1873.9 2107.1 1555.6 1860.4 2123.5 TRUE FALSE FALSE 2110.200936 2059.762174 1743.420243 2014.85437 1835.23607 1838.15848 2188.371553 1732.683216 1783.713525 2110.869328 0.999683357 0.975788575 0.825925234 0.954514021 0.869421923 0.870806381 1.036715785 0.820838691 0.845013711 1 11.04362156 -6.978732151 23.19937785 0.999212874 0.902826516 0.013449537 0.076911068 75.13953267 81962.88137 0.008682032 0.011409519 1.05E-07 6.978732151 -0.096386358 AAMYDIISS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 AAMYDIISSPSK 12 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 AAMYDIIS(0.115)S(0.661)PS(0.224)K;AAMYDIIS(0.176)S(0.824)PSK ; 134.98 0.0014068 29972000 13692.7 9178.5 7399.7 7728.8 7999.7 8979.4 6795.1 4767.9 9431.9 11432.6 TRUE FALSE FALSE 12087.66246 9461.278706 7799.750165 8044.013871 7409.578069 8808.132906 7057.189283 5310.658463 9043.11309 11364.59839 1.063624252 0.832522046 0.686319912 0.707813299 0.651987674 0.775050081 0.620980086 0.467298384 0.795726587 1 13.47225908 -6.978410382 2.32171712 1.030544944 0.65477494 0.59968985 0.106129668 0.0831927 0.900291275 0.013388867 0.017596812 1.05E-07 6.978410382 -0.375770004 DKDDQEWESPS(ph)PPKPTVFISGVIAR ddPTM_HeLa_CUDC101_4h_R1 3 DKDDQEWESPSPPKPTVFISGVIAR 25 2 P51397 P51397 DAP Death-associated protein 1 1 0 DKDDQEWES(0.003)PS(0.994)PPKPT(0.003)VFISGVIAR;DKDDQEWES(0.07)PS(0.93)PPKPT(0.001)VFISGVIAR;DKDDQEWES(0.049)PS(0.943)PPKPT(0.004)VFIS(0.004)GVIAR ;; 81.65 3.87E-05 1381010000 3179.31 2917.21 2375.87 2589.37 2570.35 2446.98 2430.31 2136.17 3371.34 3180.54 TRUE FALSE FALSE 2806.636101 3007.085782 2504.316719 2694.975701 2380.740401 2400.307933 2524.047871 2379.342958 3232.371938 3161.622007 0.887720321 0.951121221 0.792098712 0.852402879 0.753012345 0.759201425 0.798339544 0.752570343 1.022377733 1 11.62644918 -6.978319374 0.266483765 1.021927481 0.70899918 0.836713134 0.039707473 0.557839494 0.128280779 0.046713443 0.067473174 1.05E-07 6.978319374 -0.312928302 RT(ph)PT(ph)PPPR ddPTM_HeLa_CUDC101_4h_R1 1 RTPTPPPR 8 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RT(1)PT(1)PPPR 73.848 0.03167 33978000 129.2 0 123.36 136.9 121.14 0 56.95 119.72 168.38 111.65 TRUE FALSE FALSE 114.0553719 0 130.0292147 142.4833737 112.2037435 0 59.14658058 133.3484409 161.4393051 110.9859008 1.027656405 0 1.171583181 1.283797065 1.01097295 0 0.532919768 1.201489918 1.454592916 1 6.794232604 -6.978147488 0.385588505 1.042372431 0.677110916 0.087177995 0.468333578 2.794332761 1.069914614 0.253213091 0.38351014 1.05E-07 6.978147488 -0.365261515 VLHS(ph)PPAVR ddPTM_HeLa_CUDC101_4h_R1 1 VLHSPPAVR 9 0 Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5;Q9Y4B5-4 Q9Y4B5-2 MTCL1 Microtubule cross-linking factor 1 1 0 VLHS(1)PPAVR 77.288 0.031913 63393000 3455.5 2946.1 2625.7 2660.7 3283.9 2773 3062.4 2729.9 3449.3 3109.1 TRUE FALSE FALSE 3050.451528 3036.865849 2767.653284 2769.214847 3041.653239 2720.109645 3180.517794 3040.660781 3307.118394 3090.606935 0.987007275 0.982611478 0.89550478 0.896010041 0.984160491 0.880121511 1.029091651 0.983839371 1.070054673 1 11.59367447 -6.978107376 24.93361581 0.993387963 0.9447368 0.268034148 0.05013424 264.1338024 300822.3386 0.007001473 0.009201377 1.05E-07 6.978107376 -0.048651163 YPSSISSS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 1 YPSSISSSPQK 11 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 YPS(0.001)S(0.001)IS(0.002)S(0.055)S(0.941)PQK 109.16 0.0072348 110030000 3926.8 2648.1 2181.7 2245.2 2253.5 2491.4 1938.6 1776.1 2645.6 3267.3 TRUE FALSE FALSE 3466.506457 2729.684822 2299.649301 2336.768961 2087.263795 2443.880696 2013.372451 1978.284045 2536.547248 3247.865954 1.067318204 0.84045489 0.708049326 0.719478265 0.642657001 0.752457377 0.619906265 0.609102738 0.780988897 1 11.66527638 -6.978081617 2.3304389 1.032181981 0.67334312 0.61527393 0.091486111 0.054761811 0.59724139 0.008431313 0.011081435 1.05E-07 6.978081617 -0.358838861 S(ph)SIRVEEIIPAAR ddPTM_HeLa_CUDC101_4h_R1 1 SSIRVEEIIPAAR 13 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 S(0.5)S(0.5)IRVEEIIPAAR 63.31 0.039166 2638800 4978.7 2882.3 1442.3 2820.9 2488.7 3115.8 1996.9 1502.6 1589.2 1984.3 TRUE FALSE FALSE 4395.104333 2971.100247 1520.275101 2935.948495 2305.113559 3056.371306 2073.921102 1673.64991 1523.692503 1972.497295 2.228192831 1.50626328 0.770736216 1.488442343 1.168626981 1.549493281 1.051418984 0.84849288 0.772468742 1 10.94580761 -6.976686285 24.59500878 1.5950983 1.173608736 0 0.442158478 297.0219651 313344.7809 0.080989817 0.106438013 1.06E-07 6.976686285 -0.421489563 QQPPEPEWIGDGESTS(ph)PSDKVVK ddPTM_HeLa_CUDC101_4h_R1 1 QQPPEPEWIGDGESTSPSDKVVK 23 1 Q8NE71;Q5STZ8;Q8NE71-2;A0A0G2JIC2 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 QQPPEPEWIGDGES(0.192)T(0.192)S(0.57)PS(0.046)DKVVK 55.208 0.0099677 304480000 6634.6 6368.3 7144.3 6726.1 7656.9 6829.8 6784.9 6855.9 6540.9 6456.5 TRUE FALSE FALSE 5856.902245 6564.499775 7530.542468 7000.419431 7092.065742 6699.532944 7046.595866 7636.347943 6271.281333 6418.096451 0.912560646 1.02281102 1.173329589 1.090731416 1.105010776 1.043850462 1.097926141 1.18981508 0.977124819 1 12.64792976 -6.97641096 5.866855323 0.95900117 1.11051905 0.713345023 0.044130061 0.07405697 8.101039265 0.008071757 0.010518293 1.06E-07 6.97641096 0.15151788 TTPPTQKPPS(ph)PPMSGK ddPTM_HeLa_CUDC101_4h_R1 1 TTPPTQKPPSPPMSGK 16 1 H0Y6B5;B7Z836;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-3;Q9NYB9-2;Q9NYB9-4;Q9NYB9;H7C3Q7;E9PEZ7 H0Y6B5 ABI2 Abl interactor 2 1 0 TTPPT(0.006)QKPPS(0.994)PPMSGK 96.096 0.028838 23368000 3772.7 3567.1 3853 3845 3811.4 3492.1 3580.8 3728.8 3710.6 3968.2 TRUE FALSE FALSE 3330.469825 3676.998123 4061.304835 4001.81572 3530.240615 3425.494011 3718.912655 4153.27152 3557.647497 3944.59697 0.844311814 0.932160662 1.029586765 1.014505601 0.894955972 0.868401522 0.942786471 1.052901361 0.901903927 1 11.94566219 -6.976331762 24.96774592 0.924467702 0.96215875 0.111467006 0.064685459 627.1514607 661583.7019 0.01299845 0.017082737 1.06E-07 6.976331762 0.037691048 GTDTQTPAVLS(ph)PSKTQATLKPK ddPTM_HeLa_CUDC101_4h_R1 1 GTDTQTPAVLSPSKTQATLKPK 22 2 P46087;P46087-4;P46087-2 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 GT(0.001)DT(0.001)QT(0.001)PAVLS(0.953)PS(0.015)KT(0.015)QAT(0.014)LKPK 47.485 0.025632 185490000 1864.5 1819.1 2483.5 1648 2074.6 2030.5 1802.9 1785.9 1950.2 2033.8 TRUE FALSE FALSE 1645.946136 1875.144315 2617.765522 1715.212563 1921.560891 1991.771596 1872.438457 1989.199637 1869.811931 2021.702867 0.814138498 0.927507373 1.294831978 0.848399926 0.950466521 0.985195019 0.926168967 0.983922845 0.924869802 1 10.98135526 -6.976301989 24.99998397 0.91005254 0.995813503 0.105709147 0.116538947 433.8248503 457658.1795 0.020128449 0.026453271 1.06E-07 6.976301989 0.085760963 SNVVSPT(ph)KNEDNGAPENSVEKPHEKPEAR ddPTM_HeLa_CUDC101_4h_R1 1 SNVVSPTKNEDNGAPENSVEKPHEKPEAR 29 3 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 S(0.002)NVVS(0.029)PT(0.968)KNEDNGAPENS(0.001)VEKPHEKPEAR 53.361 0.0045642 103370000 5425.9 5194.3 6168.6 5345.2 5889.9 5297.6 5042.7 5579.5 5767.2 5776.6 TRUE FALSE FALSE 4789.884227 5354.330226 6502.093175 5563.20036 5455.413811 5196.557106 5237.198628 6214.647727 5529.473575 5742.240526 0.834149006 0.932446177 1.132326858 0.968820504 0.950049686 0.904970296 0.912047937 1.082268794 0.96294705 1 12.48739805 -6.975278333 24.99819492 0.919661224 0.985504721 0.114287586 0.077445117 401.1820882 405668.5027 0.014548786 0.01912047 1.06E-07 6.975278333 0.065843497 VLGSEGEEEDEALS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 7 VLGSEGEEEDEALSPAK 17 0 M0R0Q7;P18858-2;P18858;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 0 VLGSEGEEEDEALS(1)PAK;VLGSEGEEEDEALS(1)PAK;VLGSEGEEEDEALS(1)PAK;VLGSEGEEEDEALS(1)PAK;VLGSEGEEEDEALS(1)PAK;VLGSEGEEEDEALS(1)PAK;VLGSEGEEEDEALS(1)PAK ;;;;;; 254.71 8.73E-57 666130100 17812.67 14586.24 13188.28 13799.55 15774.86 14891.494 13465.26 13504.34 15307.58 15318.32 TRUE FALSE FALSE 15724.69582 15035.62477 13901.27831 14362.3553 14611.18001 14607.46356 13984.61959 15041.61948 14676.59507 15227.20595 1.03267112 0.987418494 0.912923773 0.943203588 0.959544387 0.959300321 0.918396956 0.987812178 0.963840321 1 13.89436362 -6.975206919 6.454214299 1.015206824 0.946616325 0.415278408 0.026738329 0.071105048 10.30547672 0.003543518 0.00462466 1.06E-07 6.975206919 -0.068590499 GAGATSGS(ph)PPAGRN ddPTM_HeLa_CUDC101_4h_R1 4 GAGATSGSPPAGRN 14 1 B4DEE8;P16455 B4DEE8 MGMT Methylated-DNA--protein-cysteine methyltransferase 1 0 GAGAT(0.036)S(0.122)GS(0.842)PPAGRN;GAGAT(0.053)S(0.218)GS(0.729)PPAGRN;GAGAT(0.112)S(0.375)GS(0.512)PPAGRN;GAGAT(0.006)S(0.17)GS(0.825)PPAGRN ;;; 151.7 0.00038707 284681000 11963.2 10313.72 11563.11 12097.64 13233.9 10658.47 10466.19 8482.64 12083.14 10401.18 TRUE FALSE FALSE 10560.89183 10631.47349 12188.2467 12591.03405 12257.66156 10455.17744 10869.87445 9448.26945 11585.06785 10339.31332 1.02143068 1.028257212 1.178825549 1.217782425 1.185539231 1.011206172 1.05131493 0.913819821 1.120487164 1 13.33585275 -6.975039397 24.15399844 1.010894975 1.097849621 0.02639223 0.091874984 206.2054949 199540.8782 0.014499329 0.019055373 1.06E-07 6.975039397 0.086954646 ENS(ph)PNSFPRR ddPTM_HeLa_CUDC101_4h_R1 2 ENSPNSFPRR 10 1 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 ENS(0.997)PNS(0.003)FPRR;ENS(0.999)PNS(0.001)FPRR ; 84.169 0.019879 8652000 2380.8 2190.4 2616.9 2659.4 2668.9 2239.6 2309.6 2446.6 2760.2 2069.9 TRUE FALSE FALSE 2101.726233 2257.883628 2758.37753 2767.861827 2472.020564 2196.883361 2398.682046 2725.111055 2646.423388 2057.588143 1.021451373 1.09734479 1.340587784 1.345197209 1.201416607 1.0676983 1.165773653 1.324420081 1.28617741 1 11.00673852 -6.974961953 5.017616397 1.011988372 1.23264693 0.131967904 0.11880356 0.097934931 6.534388134 0.014278878 0.018597849 1.06E-07 6.974961953 0.220658559 QGSITSPQANEQSVT(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 2 QGSITSPQANEQSVTPQR 18 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QGSITSPQANEQSVT(1)PQR;QGSITSPQANEQSVT(1)PQR ; 204.78 5.85E-17 28217000 3924.9 2938 2805.7 2786.1 2588.93 2799.65 2511.56 2109.23 2923.7 3876.2 TRUE FALSE FALSE 3464.829172 3028.516298 2957.384629 2899.729201 2397.949792 2746.251341 2608.431711 2349.336217 2803.183849 3853.14419 0.89922126 0.785985717 0.767525035 0.752561819 0.622335857 0.712729969 0.676961874 0.609719258 0.727505567 1 11.91182046 -6.974744217 0.499120209 0.992539068 0.633942193 0.391976973 0.088661146 0.137474158 0.078238825 0.012053226 0.018249453 1.06E-07 6.974744217 -0.358596876 KSS(ph)TS(ph)GSDFDTK ddPTM_HeLa_CUDC101_4h_R1 1 KSSTSGSDFDTK 12 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 2 0 KS(0.251)S(0.633)T(0.159)S(0.599)GS(0.323)DFDT(0.035)K 95.428 0.030166 12442000 4965.2 4690.9 4902.3 5249.2 5166.3 4815.8 5048.7 4105.6 4409.1 5200.4 TRUE FALSE FALSE 4383.186783 4835.421069 5167.333167 5463.285065 4785.192342 4723.946639 5243.43005 4572.964909 4227.355032 5169.46779 0.847899041 0.935380829 0.999587071 1.056837045 0.925664408 0.913816824 1.014307519 0.884610388 0.8177544 1 12.33580004 -6.974136513 21.33109301 0.926251685 0.967919412 0.142657714 0.067870187 97.34291041 80282.14215 0.011727789 0.015412451 1.06E-07 6.974136513 0.041667727 SPFNSPSPQDS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SPFNSPSPQDSPR 13 0 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 0 SPFNSPS(0.001)PQDS(0.999)PR;SPFNS(0.007)PS(0.044)PQDS(0.949)PR ; 179.55 5.79E-08 69715000 2723.6 1996.85 1815.16 1714.28 1666.21 2002.35 1765.39 1781.03 2216.8 2319.9 TRUE FALSE FALSE 2404.343737 2058.370582 1913.29304 1784.195748 1543.297008 1964.15851 1833.481684 1983.775256 2125.422566 2306.101132 1.042601169 0.892576025 0.829665713 0.773684954 0.669223473 0.851722625 0.795056929 0.860229081 0.921651933 1 11.17124007 -6.973964862 2.25212398 1.020330177 0.789681501 0.663941251 0.059888141 0.092359085 0.939920276 0.008987534 0.01184062 1.06E-07 6.973964862 -0.230648676 ALS(ph)PVIPLIPR ddPTM_HeLa_CUDC101_4h_R1 2 ALSPVIPLIPR 11 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 ALS(1)PVIPLIPR;ALS(1)PVIPLIPR ; 144.7 0.0011194 163662000 3776.08 3210.26 2470.18 2932.92 3326.49 3144.44 3031.66 3371.84 3564.4 3394.11 TRUE FALSE FALSE 3333.453627 3309.164306 2603.725403 3052.537155 3081.10146 3084.465046 3148.592142 3755.676636 3417.473923 3373.921683 0.988005633 0.980806497 0.771720759 0.90474452 0.913210723 0.91420766 0.933214353 1.11314873 1.012908492 1 11.72021077 -6.973076803 24.9999695 0.993813421 0.919526874 0.164563642 0.07761878 286.9315289 266434.2715 0.012228632 0.016071378 1.06E-07 6.973076803 -0.074286547 EVMESAVGNSSGSGQNEES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 EVMESAVGNSSGSGQNEESPR 21 0 Q9NVF7 Q9NVF7 FBXO28 F-box only protein 28 1 0 EVMESAVGNS(0.001)S(0.001)GS(0.001)GQNEES(0.998)PR;EVMESAVGNSSGSGQNEES(1)PR;EVMESAVGNS(0.003)S(0.001)GS(0.074)GQNEES(0.922)PR ;; 218.74 2.78E-46 0 3062.33 2239.92 2095.04 1997.98 2133.15 2358.53 1846.28 2100.07 2542.9 2471.41 TRUE FALSE FALSE 2703.36832 2308.92928 2208.3042 2079.46626 1975.791774 2313.54497 1917.491638 2339.13348 2438.080586 2456.709943 1.100401912 0.939846109 0.898886824 0.84644354 0.804243 0.941724918 0.780512019 0.952140682 0.992416949 1 11.26251182 -6.973050606 2.781461041 1.047142771 0.864880394 0.591886905 0.058717555 0.115694194 1.821897875 0.00987635 0.012948544 1.06E-07 6.973050606 -0.182262378 KPVWVDEEDEDEEMVDMMNNR ddPTM_HeLa_CUDC101_4h_R1 1 KPVWVDEEDEDEEMVDMMNNR 21 1 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 0 0 69.986 0.0050432 5163700 1719.7 1105 1025.3 1278.4 1031.5 1352.7 1426.5 1163.2 1134.2 1150.9 FALSE FALSE TRUE 1518.119373 1139.04374 1080.730819 1330.538678 955.4083 1326.899501 1481.520583 1295.613986 1087.447796 1144.054396 1.326964329 0.995620265 0.944649855 1.163002986 0.835107407 1.159822038 1.2949739 1.132475861 0.950521059 1 10.15993993 -9.86750899 1.988195199 0.999078856 1.145555678 0.058422092 0.14773413 0.68193887 4.884332517 0.125749225 0.025042394 1.36E-10 9.86750899 0.146476822 S(ph)DQKT(ph)T(ph)ES(ph)TVTRK ddPTM_HeLa_CUDC101_4h_R1 1 SDQKTTESTVTRK 13 2 A0A0A0MTS7;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12;A0A0A0MRA3;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9 A0A0A0MTS7 TTN Titin 4 0 S(1)DQKT(0.999)T(0.995)ES(0.658)T(0.344)VT(0.004)RK 61.167 0.032109 6797800 204.33 161.89 51.978 113.6 121.38 135.39 112.26 162.75 117.77 175.47 TRUE FALSE FALSE 180.3787471 166.877639 54.7880879 118.233099 112.4260392 132.8076613 116.5899058 181.2768021 112.9154708 174.4262966 1.034125878 0.956722938 0.314104518 0.677839874 0.644547533 0.761397013 0.668419316 1.0392745 0.647353484 1 7.446473748 -6.972997389 24.99916157 1.01502608 0.680824044 0.165461126 0.201671623 131.9594236 122168.4375 0.025343049 0.033306876 1.06E-07 6.972997389 -0.334202035 GDVEEDETIPDS(ph)EQDIR ddPTM_HeLa_CUDC101_4h_R1 1 GDVEEDETIPDSEQDIR 17 0 Q92973-3;Q92973-2;Q92973 Q92973-3 TNPO1 Transportin-1 1 0 GDVEEDET(0.18)IPDS(0.82)EQDIR 77.674 0.015671 26302000 1251.2 979.38 804.24 830.95 1105.9 1049.5 977.74 858.07 1082.9 945.69 TRUE FALSE FALSE 1104.536233 1009.553537 847.7196471 864.8397327 1024.31996 1029.482536 1015.451759 955.7492204 1038.262404 940.0649938 1.174957306 1.073918871 0.901767061 0.919978659 1.089626746 1.095118468 1.080193142 1.016684194 1.104458107 1 9.876616694 -6.972106442 24.9995261 1.084819792 1.019612826 0.184471344 0.073349183 393.0490637 352268.3232 0.014992127 0.019703231 1.07E-07 6.972106442 -0.065206966 KQEEQMETEHINPVTEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 4 KQEEQMETEHINPVTEKR 18 2 V9GYT7 V9GYT7 PSIP1 0 1 ;;; KQEEQMETEHINPVTEK(1)R;KQEEQMETEHINPVTEK(1)R;KQEEQMETEHINPVTEK(1)R;KQEEQMETEHINPVTEK(1)R 59.579 0.016305 22164000 8677.32 9618.57 9579.02 9794.68 11381.8 10887.3 11025.57 10865.7 6722.94 7276.39 FALSE TRUE FALSE 7660.177704 9914.906741 10096.8908 10194.14939 10542.18729 10679.64289 11450.82993 12102.60737 6445.817568 7233.109709 1.059043484 1.370766813 1.395926676 1.40937298 1.457490307 1.476493973 1.583112989 1.673223255 0.891154403 1 12.82040032 -6.817004601 0.629602484 0.995420814 1.583945545 0.909761795 0.073995613 0.136278088 0.112585048 0.018718873 0.031160975 1.52E-07 6.817004601 0.588524731 APS(ph)PAPSSVPLGSEK ddPTM_HeLa_CUDC101_4h_R1 1 APSPAPSSVPLGSEK 15 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 APS(0.966)PAPS(0.03)S(0.004)VPLGSEK 124.16 0.0008287 8510600 2441 1700.9 1308.2 1550.1 1277.4 1285.1 1369.9 1749.8 1805.1 1896.4 TRUE FALSE FALSE 2154.86968 1753.302713 1378.925249 1613.319778 1183.168747 1260.588859 1422.737502 1948.990159 1730.693014 1885.120128 1.143094091 0.930074793 0.731478715 0.855818021 0.627635729 0.668704789 0.754719808 1.033881146 0.918081022 1 10.88044075 -6.971562353 3.83965031 1.067100025 0.770106453 0.443255756 0.119399365 0.114863039 3.707621674 0.019057927 0.02486592 1.07E-07 6.971562353 -0.296993572 EANANGSS(ph)PEPVKAVEAR ddPTM_HeLa_CUDC101_4h_R1 1 EANANGSSPEPVKAVEAR 18 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 EANANGS(0.064)S(0.936)PEPVKAVEAR 101.48 0.0010329 36834000 2116.6 2538.3 2841.5 2556.7 3562.4 2706.3 3150 3364.9 2695.5 1674 TRUE FALSE FALSE 1868.495357 2616.502014 2995.120085 2660.973277 3299.608849 2654.681837 3271.496555 3747.946615 2584.390349 1664.042974 1.122864846 1.572376469 1.799905491 1.599101297 1.982886801 1.595320481 1.96599283 2.252313597 1.553079091 1 10.70047698 -6.970752188 0.798412436 1.013854665 1.935701139 0.545173197 0.244743769 0.160474557 0.206312982 0.039809664 0.056789611 1.07E-07 6.970752188 0.921846475 KQELEEICHDLEAR ddPTM_HeLa_CUDC101_4h_R1 4 KQELEEICHDLEAR 14 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;;; ;;; 159.22 3.70E-05 162135000 42718.6 38355.4 39045.8 36969.4 42231.6 41173.2 39038.6 39678 39460.3 22628.2 FALSE FALSE TRUE 37711.19047 39537.08441 41156.73406 38477.17193 39116.25901 40387.88981 40544.33188 44194.78314 37833.72973 22493.60646 1.676529308 1.757703216 1.829708105 1.710582605 1.738994548 1.795527537 1.802482494 1.964770888 1.681977045 1 14.45722737 -9.143927467 0.419300206 0.789010194 1.838029672 0.185317473 0.221498977 0.269050264 0.066866379 0.123870265 0.021321431 7.18E-10 9.143927467 1.049019478 KQELEEILHDLESR ddPTM_HeLa_CUDC101_4h_R1 2 KQELEEILHDLESR 14 1 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 0 ; ; 105.46 0.0032618 11962400 18711.4 16049.7 16277.7 16295.2 19858.3 17957 16848.4 16600.2 17808 18396.4 FALSE FALSE TRUE 16518.07806 16544.17223 17157.7217 16959.78869 18393.39277 17614.50014 17498.24843 18489.89967 17073.9467 18286.97739 0.903269999 0.904696926 0.938248095 0.927424381 1.005819189 0.963226441 0.956869364 1.011096545 0.933666966 1 14.15852902 -5.767867517 24.99837485 0.946102359 0.980795031 0.349760152 0.030732163 242.8844345 944557.3171 0.006319491 0.011654164 1.71E-06 5.767867517 0.034692671 SGEQAEGS(ph)PGGPGDSQGR ddPTM_HeLa_CUDC101_4h_R1 2 SGEQAEGSPGGPGDSQGR 18 0 P38936 P38936 CDKN1A Cyclin-dependent kinase inhibitor 1 1 0 S(0.009)GEQAEGS(0.703)PGGPGDS(0.287)QGR;S(0.136)GEQAEGS(0.864)PGGPGDSQGR ; 212.55 3.48E-24 26856000 3210 4063 4847.9 5688.5 6489.5 4750.7 5230 2392.11 3816.3 3859.28 TRUE FALSE FALSE 2833.728666 4188.176214 5109.992138 5920.501618 6010.782514 4660.088313 5431.722852 2664.418133 3658.990499 3836.324831 0.738657124 1.091715743 1.332001945 1.543274326 1.566807499 1.21472725 1.41586625 0.6945236 0.953774943 1 11.90550917 -6.969137681 3.712476232 0.877062288 1.318479818 0.356913834 0.237509974 0.164683258 4.889962081 0.039787809 0.05197669 1.07E-07 6.969137681 0.44141753 KQEVQAWDGEVR ddPTM_HeLa_CUDC101_4h_R1 1 KQEVQAWDGEVR 12 1 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 0 86.803 0.026843 9791800 3108 3113.9 2937.8 2957 3315.5 2899.8 2695.2 2687.7 3020.9 3006.3 FALSE FALSE TRUE 2743.684951 3209.835568 3096.626354 3077.599241 3070.92217 2844.491146 2799.154767 2993.656904 2896.377223 2988.418394 0.918106031 1.074091759 1.036209107 1.029842156 1.02760784 0.951838321 0.936667627 1.001752937 0.969200708 1 11.54516643 -3.890908934 19.15518612 0.979882073 3.690984933 0 0.048796517 1726.293111 333131.8578 0.00775849 20274.24032 0.000128556 3.890908934 2.71110286 GLQVDLQS(ph)DGAAAEDIVASEQSLGQK ddPTM_HeLa_CUDC101_4h_R1 2 GLQVDLQSDGAAAEDIVASEQSLGQK 26 0 A0A3B3IT92;P33991;A0A3B3ITP6;A0A3B3IS57;A0A3B3IU45 A0A3B3IT92 MCM4 DNA replication licensing factor MCM4 1 0 GLQVDLQS(1)DGAAAEDIVASEQSLGQK;GLQVDLQS(1)DGAAAEDIVASEQSLGQK ; 109.52 9.20E-08 16715200 6625.9 5484.1 4683.1 4734.6 5415.4 4878.4 4555.4 4206.3 6169.9 6303.2 TRUE FALSE FALSE 5849.222046 5653.058621 4936.282552 4927.697453 5015.916731 4785.352648 4731.103304 4685.12819 5915.574111 6265.708286 0.933529264 0.902221802 0.787825147 0.786454975 0.800534673 0.763736904 0.75507877 0.747741193 0.944118979 1 12.61326189 -6.968241196 0.709975756 0.985220863 0.754102473 0.928940609 0.023497641 0.091320714 0.09472742 0.005469397 0.00795681 1.08E-07 6.968241196 -0.23111839 SISGASSGLST(ph)SPLS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 SISGASSGLSTSPLSSPR 18 0 Q8IWQ3-6;Q8IWQ3-3;Q8IWQ3-2;Q8IWQ3-4;Q8IWQ3;Q8IWQ3-5 Q8IWQ3-6 BRSK2 Serine/threonine-protein kinase BRSK2 2 0 S(0.054)IS(0.097)GAS(0.179)S(0.211)GLS(0.211)T(0.248)S(0.002)PLS(0.616)S(0.382)PR 78.285 0.0030956 0 1177.3 861.26 653.4 929.35 698.44 764.37 656.72 697.04 860.34 940.65 TRUE FALSE FALSE 1039.298679 887.7943998 688.7247804 967.25291 646.9174727 749.7909158 682.0499104 776.3882161 824.8764211 935.054972 1.111484041 0.949456905 0.736560738 1.034434273 0.691849669 0.801868273 0.729422259 0.830312911 0.882168905 1 9.868907373 -6.967567256 4.597619581 1.052091564 0.80667237 0.390411471 0.105844575 0.098483002 4.944270122 0.014976946 0.019561499 1.08E-07 6.967567256 -0.245419193 KVTSPSSSSSSSS(ph)S(ph)DSESDDEADVSEVTPR ddPTM_HeLa_CUDC101_4h_R1 1 KVTSPSSSSSSSSSDSESDDEADVSEVTPR 30 1 P56181-2 P56181-2 2 0 KVTSPSSSSSS(0.005)S(0.058)S(0.647)S(0.647)DS(0.151)ES(0.489)DDEADVS(0.002)EVTPR 104.83 4.61E-10 6775600 742.52 631.34 536.48 604.85 799.69 752.15 560.45 531.77 666.52 652.35 TRUE FALSE FALSE 655.4829312 650.7908371 565.4837316 629.5183974 740.6984619 737.8039919 582.0667442 592.3045473 639.0457635 648.4697932 1.010814903 1.003579263 0.872027869 0.970775206 1.142225081 1.137761542 0.897600398 0.913388031 0.98546728 1 9.340895563 -6.967175018 24.99114889 1.005217186 0.992721057 0.001320453 0.086155059 1786.252238 1359947.169 0.014771961 0.019413985 1.08E-07 6.967175018 -0.012496129 GGS(ph)HLQAAAQT(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 GGSHLQAAAQTPPR 14 0 C9JDY8;P51172-1 C9JDY8 SCNN1D 2 0 GGS(1)HLQAAAQT(1)PPR 99.53 0.029433 63582000 3397.2 2911.9 2432.1 2615.6 3118.1 2532.9 2888.4 2939.2 3133.3 3079.5 TRUE FALSE FALSE 2998.985366 3001.612188 2563.586683 2722.275474 2888.083975 2484.589153 2999.806556 3273.786647 3004.144048 3061.182997 0.979681832 0.980539938 0.837449667 0.889288708 0.943453553 0.811643458 0.979950091 1.069451467 0.981367024 1 11.57987358 -6.966958246 24.97967991 0.989863522 0.918168145 0.171820553 0.068057779 227.285014 171827.7885 0.010924031 0.014356947 1.08E-07 6.966958246 -0.071695377 VVPQQITHTS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 VVPQQITHTSPR 12 0 H7BXF5;A0A2R8YDB8;Q9H0E3;Q9H0E3-3 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 0 VVPQQIT(0.004)HT(0.325)S(0.671)PR 99.752 0.0075878 26730000 5079 4265.3 3642 3481.4 4650.9 4394.7 4086.3 3972.3 4354.4 4622.3 TRUE FALSE FALSE 4483.647319 4396.708837 3838.897536 3623.38654 4307.812373 4310.87842 4243.90996 4424.490575 4174.909789 4594.806354 0.975807678 0.956886645 0.835486251 0.788583079 0.937539483 0.938206768 0.923631952 0.96293298 0.908614959 1 12.16578835 -6.966761363 8.301750796 0.987445257 0.897349297 0.195391747 0.055175757 0.184617657 40.54996858 0.008559875 0.011228078 1.08E-07 6.966761363 -0.09009596 KQLATK(ac)AAR ddPTM_HeLa_CUDC101_4h_R1 2 KQLATKAAR 9 2 K7EK07;P84243;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;K7EP01;Q6NXT2;Q71DI3;P68431;Q5TEC6 K7EK07;Q71DI3 H3F3B;H3F3A;H3F3C;HIST2H3A;HIST1H3A;HIST2H3PS2 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1 0 1 ; KQLATK(1)AAR;KQLATK(1)AAR 135.55 0.0033825 268530000 67697 7561 2514.94 21560 6401.5 12142 10564.4 2524.14 1266.88 893.78 FALSE TRUE FALSE 59761.66028 7793.945448 2650.905264 22439.30999 5929.274099 11910.41158 10971.87245 2811.477895 1214.65867 888.4637568 67.26403843 8.772384229 2.983695444 25.25630316 6.67362518 13.40562458 12.34926283 3.164426093 1.367144873 1 9.795169115 -1.156442455 24.34978951 10 10.2698419 0 19.47586659 0 0 4.507599435 0 0.069752141 1.156442455 0.269841896 VSS(ph)PAPMEGGEEEEELLGPK ddPTM_HeLa_CUDC101_4h_R1 2 VSSPAPMEGGEEEEELLGPK 20 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 VS(0.043)S(0.957)PAPMEGGEEEEELLGPK;VS(0.152)S(0.848)PAPMEGGEEEEELLGPK ; 149.18 1.19E-05 22391900 17731.9 14338.8 11792.3 12741.4 14230.4 14248.9 13681.6 11436.9 16013.7 15738 TRUE FALSE FALSE 15653.39356 14780.56143 12429.82741 13261.04937 13180.65174 13977.12597 14209.3039 12738.83047 15353.60851 15644.38968 1.000575534 0.944783513 0.794522999 0.847655271 0.8425162 0.893427373 0.908268343 0.814274684 0.98141307 1 13.93335776 -6.966060004 4.789860827 0.999285914 0.854424836 0.807100726 0.032066018 0.05691501 3.154729309 0.005212461 0.006812758 1.08E-07 6.966060004 -0.144861078 DCRS(ph)PGLLDTTPIR ddPTM_HeLa_CUDC101_4h_R1 1 DCRSPGLLDTTPIR 14 1 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 0 DCRS(1)PGLLDTTPIR 85.271 0.01108 12334000 531.41 611.08 497.5 513.55 713.94 557.15 534.31 649.48 648.86 429.25 TRUE FALSE FALSE 469.1189254 629.9066505 524.3963549 534.4947888 661.2740686 546.523292 554.9185157 723.4141779 622.1137162 426.6968019 1.09941983 1.476239446 1.228967155 1.252633688 1.54975164 1.280823502 1.300498418 1.695382236 1.457976046 1 8.737067487 -6.965585788 0.368687452 0.969772839 1.507940913 0 0.20273803 0.611960108 0.218535224 0.081404934 0.124410218 1.08E-07 6.965585788 0.538168074 NVS(ph)TGSAENEEK ddPTM_HeLa_CUDC101_4h_R1 1 NVSTGSAENEEK 12 0 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 NVS(0.499)T(0.499)GS(0.001)AENEEK 107.35 0.0064197 5502600 1446.5 914.16 736.3 822.27 672.71 780.08 698.44 557.9 869.15 1135.5 TRUE FALSE FALSE 1276.943463 942.3241861 776.1066052 855.8057248 623.0855235 765.2012737 725.3790648 621.4090809 833.3232691 1128.745996 1.131293903 0.834841665 0.687583042 0.758191593 0.552015711 0.677921584 0.64264154 0.550530485 0.738273511 1 10.14050515 -6.965480312 2.416440438 1.061987203 0.642820733 0.526946215 0.121945107 0.069877241 0.823055508 0.012782347 0.016860753 1.08E-07 6.965480312 -0.41916647 VGSGQGGS(ph)PCWK ddPTM_HeLa_CUDC101_4h_R1 2 VGSGQGGSPCWK 12 0 A0A669KBI7;Q9UMN6;Q9UMN6-2 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 0 VGSGQGGS(1)PCWK;VGSGQGGS(1)PCWK ; 131.35 0.0015207 18122600 2256.7 1944.08 2548.8 2120.53 2117.29 2441.6 2229.6 1545.09 2291.4 1966.25 TRUE FALSE FALSE 1992.173047 2003.9748 2686.595838 2207.014379 1961.101735 2395.030548 2315.596419 1720.9768 2196.947522 1954.554658 1.019246527 1.025284605 1.374530933 1.129164831 1.003349652 1.225358697 1.184718171 0.880495612 1.12401437 1 10.93262421 -6.965393865 24.99987493 1.009781972 1.13896919 0.087175939 0.127897276 210.210496 151858.1538 0.018858982 0.024785513 1.08E-07 6.965393865 0.129187218 TIAS(ph)DSEEEAGK ddPTM_HeLa_CUDC101_4h_R1 1 TIASDSEEEAGK 12 0 Q96ST2-3;Q96ST2;Q96ST2-2 Q96ST2-3 IWS1 Protein IWS1 homolog 1 0 TIAS(0.997)DS(0.003)EEEAGK 122.46 0.0029595 4164800 1394.3 1083.6 860.7 1050.7 940.21 1021.3 948.06 670.26 1267.4 1242.3 TRUE FALSE FALSE 1230.862268 1116.984432 907.2320455 1093.552088 870.8525815 1001.820404 984.6269918 746.5596891 1215.157236 1234.910744 0.996721644 0.904506206 0.734653941 0.885531276 0.705194756 0.811249241 0.797326443 0.604545464 0.9840041 1 10.27019106 -6.96486464 2.593671375 0.998729489 0.763124137 0.701213088 0.070093186 0.103149754 1.405736532 0.010984258 0.014466235 1.08E-07 6.96486464 -0.235605352 GS(ph)PVFLPR ddPTM_HeLa_CUDC101_4h_R1 4 GSPVFLPR 8 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 GS(1)PVFLPR;GS(1)PVFLPR;GS(1)PVFLPR;GS(1)PVFLPR ;;; 120.31 0.0074035 68456000 12769.6 9327.6 7749.4 8517.5 9136.8 9357.6 8661 7010.5 8880.3 9478.2 TRUE FALSE FALSE 11272.76685 9614.9723 8168.356005 8864.880466 8462.796467 9179.119371 8995.057671 7808.546983 8514.250275 9421.823245 1.196452805 1.020500178 0.866961287 0.940888004 0.898212188 0.974240243 0.954704566 0.828772391 0.903673318 1 13.20179055 -6.964545843 5.657319229 1.093649523 0.91740617 0.244489575 0.084544843 0.111155586 9.465655336 0.013173786 0.017244112 1.09E-07 6.964545843 -0.176243353 SALNY(ph)RKHY(ph)EDT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 SALNYRKHYEDTK 13 2 H0Y786;A0A087X1N7;P20929-3;P20929-2;P20929-4;P20929 H0Y786 NEB Nebulin 3 0 S(0.057)ALNY(0.945)RKHY(0.998)EDT(1)K 58.754 0.0032162 0 1795.7 1410.5 988.44 1236.5 1239.1 1357.4 1247.9 1189.2 1468.1 1555.5 TRUE FALSE FALSE 1585.210768 1453.955833 1041.878056 1286.929815 1147.694062 1331.509857 1296.031921 1324.573721 1407.584297 1546.247817 1.025198387 0.940312295 0.673810527 0.832292082 0.74224458 0.861123193 0.838178659 0.856637407 0.910322577 1 10.59455584 -6.964360636 7.871746469 1.010449327 0.803794493 0.627417474 0.062552974 0.073523697 13.74655163 0.008423741 0.011051545 1.09E-07 6.964360636 -0.206654833 LTATPT(ph)PLGGMTGFHMQTEDR ddPTM_HeLa_CUDC101_4h_R1 3 LTATPTPLGGMTGFHMQTEDR 21 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 LT(0.004)AT(0.058)PT(0.937)PLGGMTGFHMQTEDR;LT(0.121)AT(0.394)PT(0.485)PLGGMTGFHMQTEDR;LT(0.008)AT(0.114)PT(0.878)PLGGMTGFHMQTEDR ;; 119.37 1.38E-06 27609300 4413.82 3747.86 2966.07 3213.31 4233.09 4243.2 3737.24 2743.19 3764.93 3916.35 TRUE FALSE FALSE 3896.438711 3863.327124 3126.424716 3344.362671 3920.823384 4162.26803 3881.386599 3055.463661 3609.737992 3893.055376 1.000869069 0.992363774 0.803077381 0.859058592 1.007132703 1.069152023 0.997002669 0.784849782 0.927224928 1 11.92668715 -6.963636203 24.99914169 1.000210829 0.928691938 0.079395231 0.087860202 270.771964 186148.0344 0.01416159 0.018611947 1.09E-07 6.963636203 -0.071518892 AITSLLGGGS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 AITSLLGGGSPK 12 0 A0A590UJS4;Q6KC79-2;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 AITSLLGGGS(1)PK;AITSLLGGGS(1)PK ; 180.11 6.20E-08 1434620000 13928.2 11444 9163.9 10253.1 12305.2 11437.7 11025.4 10140.9 11078.1 11579.3 TRUE FALSE FALSE 12295.55751 11796.57608 9659.328153 10671.26574 11397.46991 11219.54493 11450.65337 11295.29907 10621.45603 11510.42581 1.068210483 1.024860094 0.839180784 0.927095653 0.990186645 0.974728921 0.994807105 0.981310271 0.922768298 1 13.49065358 -6.962100798 24.99876448 1.032964537 0.953032777 0.093609087 0.057011405 132.8008878 87596.69425 0.008133871 0.010689991 1.09E-07 6.962100798 -0.079931759 DGS(ph)PEAPAS(ph)PEREEVALSEYK ddPTM_HeLa_CUDC101_4h_R1 2 DGSPEAPASPEREEVALSEYK 21 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 2 0 DGS(1)PEAPAS(1)PEREEVALSEYK;DGS(1)PEAPAS(1)PEREEVALSEYK ; 95.519 0.00042972 272390000 17722.4 15212.7 14458.5 14039.4 14595.9 13689.4 13382.8 12977.8 16632.2 17115.6 TRUE FALSE FALSE 15645.00714 15681.38526 15240.17024 14611.98742 13519.18954 13428.2975 13898.97908 14455.14029 15946.61368 17013.79565 0.919548316 0.92168647 0.895753691 0.858831722 0.794601617 0.789259362 0.816924064 0.849612902 0.937275491 1 14.05441741 -6.961968011 0.415176216 0.993207199 0.794994759 0.799978534 0.029011913 0.272724465 0.116041242 0.013142637 0.020255375 1.09E-07 6.961968011 -0.19821244 ASQGLLSSIENSES(ph)DSSEAKEEGSR ddPTM_HeLa_CUDC101_4h_R1 2 ASQGLLSSIENSESDSSEAKEEGSR 25 1 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 ASQGLLSSIENS(0.047)ES(0.866)DS(0.072)S(0.015)EAKEEGSR;ASQGLLS(0.002)S(0.001)IENS(0.024)ES(0.965)DS(0.004)S(0.004)EAKEEGSR ; 118.37 5.42E-10 48966000 2918.7 2335.7 1701.37 1842.33 2224.7 1992.27 2252.3 2341.6 1992.51 2335.8 TRUE FALSE FALSE 2576.57441 2407.660149 1793.351209 1917.468181 2060.588313 1954.270769 2339.171965 2608.158279 1910.377894 2321.906558 1.109680492 1.036932404 0.77236149 0.825816256 0.887455314 0.841666415 1.007435875 1.12328305 0.822762608 1 11.1810942 -6.961862707 23.93536324 1.052925833 0.9060716 0.012920244 0.12052667 94.67561759 59418.9825 0.016794281 0.022071974 1.09E-07 6.961862707 -0.146854233 FGGSGS(ph)QVDSAR ddPTM_HeLa_CUDC101_4h_R1 2 FGGSGSQVDSAR 12 0 Q13200;Q13200-2;Q13200-3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 0 FGGS(0.467)GS(0.533)QVDSAR;FGGS(0.479)GS(0.516)QVDS(0.005)AR ; 138.31 0.0013021 53519000 3088.8 2579.8 3106 2974.8 3094.9 2837.8 2660.5 2731.2 2521.4 2546.6 TRUE FALSE FALSE 2726.735546 2659.28058 3273.919755 3096.125202 2866.595393 2783.673693 2763.116376 3042.108768 2417.466825 2531.45271 1.077142597 1.050495855 1.293296826 1.223062627 1.132391445 1.099634878 1.09151412 1.20172451 0.954972145 1 11.30574982 -6.961256703 24.9381498 1.037870044 1.167302977 0.569072216 0.06446604 101.4658314 65310.9337 0.01061123 0.013945875 1.09E-07 6.961256703 0.129432933 S(ph)PPSPATDQR ddPTM_HeLa_CUDC101_4h_R1 1 SPPSPATDQR 10 0 Q6F5E8-2;Q6F5E8 Q6F5E8-2 RLTPR Leucine-rich repeat-containing protein 16C 1 0 S(0.999)PPS(0.001)PATDQR 118.23 0.0052853 12662000 1174 1131.7 1387 1280.5 1560.1 1031.6 1263.5 1429.1 1318.6 1089.4 TRUE FALSE FALSE 1036.3855 1166.566336 1461.985415 1332.724325 1445.014531 1011.923949 1312.233618 1591.782967 1264.24675 1082.9202 0.957028504 1.077241273 1.350039841 1.230676392 1.334368433 0.934439997 1.211754678 1.469898675 1.167442208 1 10.08071122 -6.960872319 5.22574219 0.981151351 1.240683417 0.303997391 0.142814239 0.123758377 8.260449666 0.020853199 0.027315713 1.09E-07 6.960872319 0.259532066 IDGATQSS(ph)PAEPKSEDADR ddPTM_HeLa_CUDC101_4h_R1 5 IDGATQSSPAEPKSEDADR 19 1 Q32MZ4-3;Q32MZ4-2;Q32MZ4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 IDGATQS(0.043)S(0.957)PAEPKS(0.001)EDADR;IDGAT(0.009)QS(0.037)S(0.954)PAEPKSEDADR;IDGATQS(0.039)S(0.957)PAEPKS(0.004)EDADR;IDGATQS(0.087)S(0.877)PAEPKS(0.036)EDADR;IDGATQS(0.051)S(0.912)PAEPKS(0.038)EDADR ;;;; 161.96 7.49E-06 104661800 7338.23 8789.1 9318.7 8612.3 13110.8 9526.1 9486.5 11626.3 9780.5 6360.77 TRUE FALSE FALSE 6478.053803 9059.881753 9822.49711 8963.54682 12143.6424 9344.405514 9852.397483 12949.791 9377.34365 6322.935857 1.024532583 1.432859981 1.55347094 1.417624189 1.920570235 1.47785866 1.558199815 2.048066166 1.483067971 1 12.62637887 -6.958873813 1.123514053 0.996468484 1.692859403 0.426319862 0.236010448 0.155173114 0.385284707 0.033088366 0.045512755 1.10E-07 6.958873813 0.696390919 DVPPDILLDS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 8 DVPPDILLDSPER 13 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER ;;;;;;; 217.19 1.32E-24 73450800 19209.49 15175.35 13468.98 13138.31 16460.4 15224.88 14432.64 12777.56 16670.95 15989.7 TRUE FALSE FALSE 16957.7827 15642.88455 14197.1538 13674.14707 15246.14909 14934.49078 14989.31176 14232.10578 15983.76638 15894.59255 1.066890054 0.984163922 0.893206526 0.860301831 0.959203517 0.939595698 0.943044731 0.895405512 1.005610325 1 13.95624841 -6.958481333 4.533263088 1.031481788 0.917511289 0.705024052 0.031989183 0.087543396 4.054485507 0.006057804 0.007937622 1.10E-07 6.958481333 -0.1139705 LLSSNEDDANILSS(ph)PTDR ddPTM_HeLa_CUDC101_4h_R1 2 LLSSNEDDANILSSPTDR 18 0 H0YEG1;F5GY88;A0A0B4J1W0;O75448-2;O75448 H0YEG1 MED24 Mediator of RNA polymerase II transcription subunit 24 1 0 LLSSNEDDANILS(0.238)S(0.761)PT(0.001)DR;LLSSNEDDANILS(0.229)S(0.77)PT(0.001)DR ; 211.26 4.27E-24 43225000 4359 3427.5 2398.5 2908.5 3909.1 3050.6 2796.7 1661.01 4021 4804.4 TRUE FALSE FALSE 3848.044628 3533.097212 2528.170165 3027.121202 3620.733481 2992.414888 2904.569656 1850.092664 3855.252678 4775.823215 0.805734311 0.739788106 0.529368457 0.633842809 0.758138088 0.626575724 0.608181988 0.387387175 0.80724359 1 12.22153372 -6.95804342 0.092679356 1.474687883 8.82E-21 0.583417854 0.104394115 4.524567521 0.305887249 2.138018038 2.533788266 1.10E-07 6.95804342 -1.474687883 LEGDS(ph)DVDSELEDRVDGVK ddPTM_HeLa_CUDC101_4h_R1 1 LEGDSDVDSELEDRVDGVK 19 1 Q92614;Q92614-2 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 LEGDS(1)DVDSELEDRVDGVK 89.816 0.0020259 10046000 1698.9 1339 1151.5 1222.2 1268 1255.6 1424.6 1173.6 1377.9 1385.1 TRUE FALSE FALSE 1499.757517 1380.253003 1213.753573 1272.046599 1174.462166 1231.651522 1479.547299 1307.19788 1321.102379 1376.861364 1.08925819 1.002463312 0.881536519 0.923874133 0.852999581 0.894535612 1.07457972 0.949404141 0.959502833 1 10.42716759 -6.957997145 6.411348414 1.042383394 0.931161762 0.260613496 0.064616025 0.149778161 15.86442886 0.010749023 0.014106159 1.10E-07 6.957997145 -0.111221632 NSGSDGSPS(ph)PLLAR ddPTM_HeLa_CUDC101_4h_R1 3 NSGSDGSPSPLLAR 14 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 NSGSDGSPS(1)PLLAR;NSGSDGS(0.065)PS(0.935)PLLAR;NSGSDGS(0.051)PS(0.948)PLLAR ;; 204.9 1.92E-17 101615000 6146.8 4881.9 4691.5 4581.7 4639.2 4275.5 4775.2 5782.5 5176.8 5146.8 TRUE FALSE FALSE 5426.281422 5032.305553 4945.136681 4768.56153 4296.975459 4193.951961 4959.381064 6440.756426 4963.410113 5116.186605 1.060610537 0.983604771 0.966566911 0.932053871 0.839878564 0.819741789 0.96935109 1.258897871 0.970138601 1 12.32085317 -6.957857448 3.032545265 1.028534153 0.95075925 0.014730266 0.114344615 0.504365641 9.520134751 0.019193783 0.025249936 1.10E-07 6.957857448 -0.077774904 SES(ph)LSNCSIGKK ddPTM_HeLa_CUDC101_4h_R1 1 SESLSNCSIGKK 12 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.035)ES(0.963)LS(0.003)NCSIGKK 103.14 0.0048087 91400000 3820.8 3880.4 3364.9 4466.3 5542.8 4592.4 5006.6 4893.5 4412.1 1959 TRUE FALSE FALSE 3372.931616 3999.950525 3546.816672 4648.455019 5133.918687 4504.807621 5199.706239 5450.55626 4230.231371 1947.347781 1.732064323 2.054050419 1.821357596 2.38706977 2.636364566 2.313304108 2.670147721 2.798963962 2.172303998 1 10.92729485 -6.95778949 0.197933552 0.566474427 3.343471979 0.414851778 0.391940709 0.495722394 0.077819242 0.387788195 0.53492785 1.10E-07 6.95778949 2.776997552 KREDDDDDDDDDDDYDNL ddPTM_HeLa_CUDC101_4h_R1 1 KREDDDDDDDDDDDYDNL 18 2 Q16594 Q16594 TAF9 Transcription initiation factor TFIID subunit 9 0 0 91.207 0.03194 51897000 3102.6 2636.4 2948.1 2410.5 3263.4 2418.7 2481.1 2201.1 3008.6 2873.5 FALSE FALSE TRUE 2738.917931 2717.624359 3107.483204 2508.810609 3022.665484 2372.567327 2576.796858 2451.664327 2884.584235 2856.408294 0.958867798 0.951413131 1.087898817 0.878309524 1.058204981 0.830612112 0.90211083 0.858303182 1.009864115 1 11.4799865 -5.249357618 24.98173633 0.9827831 0.867518917 0.508173071 0.057342804 465.6291267 962790.3027 0.007135473 0.01803639 5.63E-06 5.249357618 -0.115264184 S(ph)VVGTPAYLAPEVLR ddPTM_HeLa_CUDC101_4h_R1 2 SVVGTPAYLAPEVLR 15 0 O94806;F8WBA3;Q15139;H0Y5M6 O94806 PRKD3;PRKD1 Serine/threonine-protein kinase D3;Serine/threonine-protein kinase;Serine/threonine-protein kinase D1 1 0 S(1)VVGTPAYLAPEVLR;S(1)VVGTPAYLAPEVLR ; 184.87 9.17E-11 25851000 950.15 683.02 491.86 655.68 469.27 802.23 469.06 593.43 496.21 697.68 TRUE FALSE FALSE 838.7748573 704.0630366 518.4514394 682.4214645 434.652887 786.9287994 487.1518013 660.9836725 475.7560138 693.5301683 1.209428076 1.015187325 0.747554271 0.983982378 0.626725277 1.134671331 0.702423375 0.953071262 0.685991808 1 9.43781483 -6.957757196 6.685779694 1.099657081 0.859627473 0 0.196097458 0.152073426 17.6212592 0.023040805 0.030243924 1.10E-07 6.957757196 -0.240029608 ALAVRGRDGY(ph)SGPPR ddPTM_HeLa_CUDC101_4h_R1 1 ALAVRGRDGYSGPPR 15 2 O75526 O75526 RBMXL2 "RNA-binding motif protein, X-linked-like-2" 1 0 ALAVRGRDGY(0.981)S(0.019)GPPR 76.332 0.0022146 0 1899.8 2110.4 2534.2 2843 2646.8 2699 2085.9 1700.2 2087.6 2327.8 TRUE FALSE FALSE 1677.108324 2175.418923 2671.206518 2958.949828 2451.550837 2647.521072 2166.353862 1893.743896 2001.548244 2313.954142 0.724780277 0.940130525 1.15439043 1.278741776 1.059463882 1.144154512 0.936212962 0.818401653 0.864990454 1 11.17614456 -6.955163452 6.658885552 0.868089516 1.071278989 0.324158844 0.132516743 0.202609634 22.26012322 0.02568985 0.033736879 1.11E-07 6.955163452 0.203189473 KREENTSNESTDVTK(ac)GDSK ddPTM_HeLa_CUDC101_4h_R1 2 KREENTSNESTDVTKGDSK 19 3 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 1 ; KREENTSNESTDVTK(1)GDSK;KREENTSNESTDVTK(1)GDSK 78.228 0.0068954 3811300 5364.5 3749.2 4269.8 3926.9 4518.7 3824.3 3841 4320 6327.3 6642.8 FALSE TRUE FALSE 4735.681442 3864.708408 4500.638303 4087.055956 4185.364504 3751.357849 3989.148657 4811.771338 6066.486016 6603.28833 0.717170174 0.58527028 0.681575312 0.618942525 0.633830342 0.568104505 0.604115474 0.728693205 0.918706819 1 12.68896893 -8.655591977 0.540183828 1.021264233 0.619317127 0.852618897 0.052871882 0.212806054 0.119082549 0.040713376 0.013395308 2.21E-09 8.655591977 -0.401947106 DLPS(ph)PLPTKR ddPTM_HeLa_CUDC101_4h_R1 1 DLPSPLPTKR 10 1 H7C4E7;Q9Y534 H7C4E7 CSDC2 Cold shock domain-containing protein C2 1 0 DLPS(0.68)PLPT(0.32)KR 64.827 0.04038 106270000 4805.8 4380 4951 4713.4 5752.4 4855.4 4334 4434.4 5116.8 4357 TRUE FALSE FALSE 4242.471409 4514.942608 5218.666036 4905.632825 5328.056912 4762.791335 4501.163832 4939.194172 4905.883338 4331.08437 0.979540237 1.042450856 1.204932897 1.132656953 1.230190053 1.099676415 1.039269487 1.140405901 1.132714794 1 12.08051256 -6.954964697 5.550789118 0.991199581 1.138083964 0.295541435 0.066745838 0.087297342 6.357641791 0.008291613 0.010882285 1.11E-07 6.954964697 0.146884383 LHGGFDS(ph)DCS(ph)EDGEALNGEPELDLTSK ddPTM_HeLa_CUDC101_4h_R1 2 LHGGFDSDCSEDGEALNGEPELDLTSK 27 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 2 0 LHGGFDS(1)DCS(1)EDGEALNGEPELDLTSK;LHGGFDS(1)DCS(1)EDGEALNGEPELDLTSK ; 83.881 3.99E-05 50015000 5971.1 5788.5 6637.8 6138.1 7616.9 6698.8 5924 5064.8 6612.7 6553 TRUE FALSE FALSE 5271.17671 5966.836824 6996.659546 6388.438249 7055.016462 6571.031551 6152.490664 5641.356359 6340.121707 6514.022465 0.809204564 0.91599881 1.07409202 0.980720942 1.08305068 1.008751749 0.944499455 0.866032684 0.973303629 1 12.66933298 -6.954914214 21.3689639 0.90741266 0.994940374 0.151646974 0.074927765 40.15131728 19029.47262 0.014747741 0.0193823 1.11E-07 6.954914214 0.087527714 NQS(ph)LVEENEK ddPTM_HeLa_CUDC101_4h_R1 1 NQSLVEENEK 10 0 O95239;O95239-2;Q2VIQ3 O95239 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B 1 0 NQS(1)LVEENEK 137.62 0.0015056 47909000 3484.2 2861.7 2397.7 2471.9 2863.3 2826 2720.4 2553 2789.7 3109.7 TRUE FALSE FALSE 3075.787358 2949.865585 2527.326915 2572.714766 2652.080063 2772.098758 2825.326739 2843.6232 2674.707385 3091.203366 0.995012943 0.954277424 0.81758675 0.832269657 0.857944221 0.896770102 0.91398928 0.91990816 0.865264128 1 11.59395285 -6.954890346 5.292258926 0.996695193 0.873623718 0.269584026 0.05173909 0.070243166 4.57492661 0.005538701 0.00726814 1.11E-07 6.954890346 -0.123071475 KRGEK(ac)GEVVETVEDVIVR ddPTM_HeLa_CUDC101_4h_R1 1 KRGEKGEVVETVEDVIVR 18 3 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;B5MCW3;Q9H0E9 H7C128 BRD8 Bromodomain-containing protein 8 0 1 K(0.401)RGEK(0.599)GEVVETVEDVIVR 59.345 0.016593 555370 300.81 207.09 335.95 149.68 333.28 260.41 172.94 266.06 309.12 278.94 FALSE TRUE FALSE 265.5495078 213.4701974 354.1124732 155.7845974 308.6945984 255.4431131 179.6103537 296.3471949 296.3779428 277.2808525 0.957691472 0.769869955 1.277089529 0.561829625 1.113292157 0.921243248 0.647756064 1.068761843 1.068872734 1 8.115204185 -6.987680572 0.319710397 1.006147516 0.865268764 0.04686611 0.20442809 4.113075696 1.211042102 0.149850295 0.221019957 1.03E-07 6.987680572 -0.140878751 QEMHFEET(ph)T(ph)ALGT(ph)TK ddPTM_HeLa_CUDC101_4h_R1 1 QEMHFEETTALGTTK 15 0 Q9P0L1;E7EMM9;Q9P0L1-2 Q9P0L1 ZKSCAN7 Zinc finger protein with KRAB and SCAN domains 7 3 0 QEMHFEET(0.993)T(0.993)ALGT(0.507)T(0.507)K 47.622 0.034711 2728600 740.06 827.89 1101.8 862.49 1056.9 966.62 961.57 1136.1 950.69 889.53 TRUE FALSE FALSE 653.3112887 853.3963096 1161.366641 897.6660702 978.9345926 948.183334 998.658077 1265.429032 911.5021558 884.239036 0.738840135 0.96511947 1.313408019 1.015184847 1.107092712 1.072315624 1.129398315 1.431093833 1.030832296 1 9.788292615 -6.953124336 7.438703982 0.875357223 1.159595917 0.41926038 0.137083293 0.146818413 19.36253961 0.023314608 0.030634511 1.11E-07 6.953124336 0.284238694 S(ph)LDGAEFSR ddPTM_HeLa_CUDC101_4h_R1 2 SLDGAEFSR 9 0 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0;Q9H4G0-4;H7C2K6 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 S(1)LDGAEFSR;S(1)LDGAEFSR ; 132.25 0.0029028 16044800 3511.9 2785.8 2576.2 2372.4 2710.9 2731 2616.04 2016.89 3275.3 3233.3 TRUE FALSE FALSE 3100.240406 2871.627196 2715.477165 2469.156726 2510.922308 2678.910725 2716.941539 2246.484605 3140.290748 3214.068188 0.964584515 0.893455592 0.844872295 0.768234083 0.781228699 0.833495299 0.845327909 0.698953623 0.977045465 1 11.65018482 -6.953104826 1.298716252 0.987463901 0.789965431 0.829456373 0.038532515 0.109941219 0.365240722 0.007072797 0.009632632 1.11E-07 6.953104826 -0.19749847 QSELSAEES(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 2 QSELSAEESPEK 12 0 F8W9X7;Q567U6 F8W9X7 CCDC93 Coiled-coil domain-containing protein 93 1 0 QSELS(0.001)AEES(0.999)PEK;QSELS(0.001)AEES(0.999)PEK ; 184.51 1.18E-10 48114000 8186.2 5821.8 5630.8 5783.6 5102.9 5462.4 5136.4 5311.7 6429.9 7188.9 TRUE FALSE FALSE 7226.626045 6001.162757 5935.21808 6019.480207 4726.469233 5358.213821 5334.512669 5916.362457 6164.8568 7146.140103 1.011262855 0.839776813 0.830548799 0.842340077 0.661401703 0.749805314 0.746488677 0.827910225 0.86268345 1 12.80294848 -6.953042317 1.294454193 1.008437704 0.758235195 0.557643008 0.067952878 0.11442529 0.3776242 0.009311924 0.012685736 1.11E-07 6.953042317 -0.250202509 YS(ph)GAYGASVSDEELK ddPTM_HeLa_CUDC101_4h_R1 2 YSGAYGASVSDEELK 15 0 C9JRZ6;F8WAR4;Q9NX63;A0A286YEX5 C9JRZ6 CHCHD3 MICOS complex subunit MIC19 1 0 Y(0.001)S(0.999)GAYGASVSDEELK;YS(1)GAYGASVSDEELK ; 262.24 5.45E-70 431150000 8058.1 5638.2 4485.4 4811.5 5074.2 5209.1 5277.5 5337.6 4828.3 5276.2 TRUE FALSE FALSE 7113.541733 5811.906259 4727.894292 5007.733767 4699.886375 5109.745096 5481.054943 5945.210809 4629.27543 5244.816928 1.356299339 1.108123761 0.901441243 0.954796676 0.89610113 0.974246607 1.045042185 1.133540196 0.882638135 1 12.3566767 -6.952461548 7.171456029 1.171537205 0.982356881 0.002417997 0.137357804 0.216514404 26.33692727 0.023767171 0.031229914 1.12E-07 6.952461548 -0.189180325 KAEGAATEEEGT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 KAEGAATEEEGTPK 14 1 P80723;P80723-2;U3KQP0 P80723 BASP1 Brain acid soluble protein 1 1 0 KAEGAATEEEGT(1)PK;KAEGAATEEEGT(1)PK;KAEGAATEEEGT(1)PK ;; 141.22 0.0047812 161349800 23173 17712 19283.2 19673.1 15808 18605.9 17374.2 17910.9 16786.9 21316.2 TRUE FALSE FALSE 20456.69607 18257.68573 20325.70812 20475.45405 14641.87533 18251.02346 18044.32871 19949.80446 16094.93688 21189.41029 0.965420735 0.861641993 0.959238971 0.966305988 0.690999661 0.861327578 0.851572954 0.941498804 0.759574554 1 14.37105582 -6.951972808 0.698563048 0.992272193 0.851139972 0 0.103857095 0.502453332 0.505734824 0.018164836 0.026798834 1.12E-07 6.951972808 -0.141132222 RSNVSSPATPTASSSSST(ph)TPTR ddPTM_HeLa_CUDC101_4h_R1 1 RSNVSSPATPTASSSSSTTPTR 22 1 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 RSNVSSPATPTASS(0.001)S(0.003)S(0.044)S(0.044)T(0.388)T(0.388)PT(0.131)R 154.17 2.83E-06 5838100 316.65 278.51 475.02 399.97 337.36 264.66 409.35 337.97 418.84 284.93 TRUE FALSE FALSE 279.532767 287.090563 500.7010181 416.2825054 312.4736249 259.6120515 425.1387666 376.4431387 401.5752379 283.2352237 0.986927979 1.013611793 1.767792196 1.469741298 1.103230103 0.916595217 1.501009518 1.329083063 1.417815315 1 8.145856883 -6.951302776 24.99994196 0.99416532 1.334764265 0.126221272 0.253266838 94.27645838 48398.90106 0.03565144 0.046855166 1.12E-07 6.951302776 0.340598945 NDQEPPPEALDFS(ph)DDEKEK ddPTM_HeLa_CUDC101_4h_R1 4 NDQEPPPEALDFSDDEKEK 19 1 Q96HR8-2;Q96HR8 Q96HR8-2 NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 1 0 NDQEPPPEALDFS(1)DDEKEK;NDQEPPPEALDFS(1)DDEKEK;NDQEPPPEALDFS(1)DDEKEK;NDQEPPPEALDFS(1)DDEKEK ;;; 122.79 2.98E-05 611139400 14638.4 11981.1 11410.2 11977.4 10599.6 11318.2 10717.5 8890.4 12951.3 14935.1 TRUE FALSE FALSE 12922.50894 12350.22349 12027.06993 12465.89014 9817.688625 11102.32419 11130.87757 9902.4472 12417.44193 14846.26536 0.870421525 0.83187409 0.810107433 0.83966505 0.661290122 0.747819328 0.749742598 0.666999205 0.836401723 1 13.85781244 -6.950997327 0.196369524 1.076339989 0.588937321 0.558569753 0.063426391 0.747651871 0.115757715 0.102132926 0.141350499 1.12E-07 6.950997327 -0.487402668 EDKS(ph)PSEESAPTTSPESVSGSVPSSGSSGR ddPTM_HeLa_CUDC101_4h_R1 2 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 P54725-2;P54725-3;P54725;A0A494C0B4 P54725-2 RAD23A UV excision repair protein RAD23 homolog A 1 0 EDKS(0.865)PS(0.114)EES(0.021)APTTSPESVSGSVPSSGSSGR;EDKS(0.824)PS(0.17)EES(0.006)APTT(0.001)SPESVSGSVPSSGSSGR ; 74.328 1.83E-05 17105000 1830.04 1392.22 993.23 1116.13 1004.95 1313.11 1183.6 938.18 1337.77 1635.24 TRUE FALSE FALSE 1615.525485 1435.112648 1046.927018 1161.650606 930.8168406 1288.064615 1229.251848 1044.978619 1282.626554 1625.51352 0.993855459 0.882867248 0.64405925 0.714636078 0.572629406 0.792404738 0.7562237 0.642860614 0.789059297 1 10.66667984 -6.950901072 3.242001551 0.996246347 0.691151382 0.589739888 0.088304346 0.062087038 1.344840566 0.009589763 0.012629269 1.12E-07 6.950901072 -0.305094965 NYVPSYDPSS(ph)PQTSQSWYLG ddPTM_HeLa_CUDC101_4h_R1 2 NYVPSYDPSSPQTSQSWYLG 20 0 Q5VW31;O00712;O00712-4;A0A1B0GW37;U3KQE8;A0A0A0MRX8 Q5VW31 NFIB Nuclear factor 1 B-type;Nuclear factor 1 1 0 NYVPSYDPS(0.105)S(0.89)PQT(0.001)S(0.002)QS(0.002)WY(0.001)LG;NYVPSYDPS(0.151)S(0.834)PQT(0.005)S(0.005)QS(0.005)WY(0.001)LG ; 100.77 0.00030048 0 14288.3 11817.2 9653 9554.1 12672.1 11369.1 11477.1 10202.3 12597.5 12844.8 TRUE FALSE FALSE 12613.44713 12181.27393 10174.87038 9943.757494 11737.30443 11152.25336 11919.77559 11363.68859 12078.22572 12768.39856 0.987864459 0.954017363 0.796879133 0.778778752 0.919246402 0.873426163 0.933537243 0.889985423 0.945946797 1 13.64028997 -6.949621586 6.415449988 0.993163612 0.867371728 0.542197245 0.047721177 0.09972365 9.290216055 0.007788073 0.010235872 1.12E-07 6.949621586 -0.125791884 EES(ph)WESGR ddPTM_HeLa_CUDC101_4h_R1 1 EESWESGR 8 0 Q9NQ29;Q9NQ29-3;B8ZZ08 Q9NQ29 LUC7L Putative RNA-binding protein Luc7-like 1 1 0 EES(1)WESGR 101.97 0.017035 26381000 1721.3 1399.5 1080 1326.3 1371.3 1158.6 1382.6 1377 1300.6 1391.6 TRUE FALSE FALSE 1519.531823 1442.616936 1138.388067 1380.392247 1270.141931 1136.501635 1435.927345 1533.752114 1246.988718 1383.322701 1.098465182 1.042863632 0.822937458 0.997881583 0.918181947 0.821573762 1.038027746 1.10874499 0.901444555 1 10.43392203 -6.948659139 24.99997477 1.047769721 0.948479407 0.030235597 0.097566043 118.7340093 57816.09068 0.014453387 0.01899547 1.13E-07 6.948659139 -0.099290314 RTAFYNEDDS(ph)EEEQR ddPTM_HeLa_CUDC101_4h_R1 2 RTAFYNEDDSEEEQR 15 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 RTAFYNEDDS(1)EEEQR;RTAFYNEDDS(1)EEEQR ; 121.77 0.00047373 20120500 2103.1 1787.02 2375.2 1937.62 2168.45 2324.2 1819.09 1991.69 2483.6 1810.38 TRUE FALSE FALSE 1856.577806 1842.075968 2503.610497 2016.644519 2008.487764 2279.869757 1889.252911 2218.415939 2381.224957 1799.611779 1.03165462 1.023596305 1.391194771 1.120599755 1.116067247 1.266867545 1.049811372 1.23271917 1.323188137 1 10.81347 -6.94752309 24.99997545 1.015614769 1.187496767 0 0.13170983 60.13555624 28648.33415 0.013237258 0.017397164 1.13E-07 6.94752309 0.171881998 SHS(ph)GTSPDNTAPPPPPPRPQPSHSR ddPTM_HeLa_CUDC101_4h_R1 2 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 S(0.165)HS(0.501)GT(0.165)S(0.165)PDNT(0.002)APPPPPPRPQPSHSR;S(0.109)HS(0.369)GT(0.261)S(0.261)PDNTAPPPPPPRPQPSHSR ; 89.029 1.07E-05 32115900 780.57 789.13 994.4 842.91 1062.16 963.33 660.04 786.8 891.53 929.11 TRUE FALSE FALSE 689.0727679 813.44216 1048.160272 877.2875132 983.8065729 944.9560853 685.4979639 876.3661316 854.7807561 923.5836124 0.746085962 0.880745554 1.134884008 0.949873408 1.065205748 1.02314081 0.742215382 0.948875792 0.925504464 1 9.851098765 -6.945964763 24.99999677 0.876585697 0.974527159 0.128288806 0.112333918 162.8413785 75339.72995 0.021697139 0.028515626 1.13E-07 6.945964763 0.097941461 NQTYSFS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 NQTYSFSPSK 10 0 Q86YS7;Q86YS7-3;H0YFE9 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 NQT(0.007)YS(0.224)FS(0.768)PS(0.001)K 151.16 0.00041012 56440000 4564.9 3111.3 2938.4 2845.5 3071.9 3165.2 2787.6 1846.6 3593.1 3755.3 TRUE FALSE FALSE 4029.809342 3207.155465 3097.258792 2961.551789 2845.292057 3104.829084 2895.118666 2056.80948 3444.990897 3732.963309 1.079520212 0.859144653 0.829705126 0.793351433 0.762207346 0.831733084 0.775555082 0.550985721 0.922856887 1 11.86610561 -6.945300278 1.818390872 1.037903052 0.755127176 0.613972766 0.084800099 0.128089226 0.846600217 0.013756525 0.018449058 1.13E-07 6.945300278 -0.282775876 GGS(ph)SKDLLDNQSQEEQR ddPTM_HeLa_CUDC101_4h_R1 1 GGSSKDLLDNQSQEEQR 17 1 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 GGS(0.834)S(0.166)KDLLDNQSQEEQR 75.998 0.010009 67875000 1204.1 1176.3 1376.1 1229.3 1459.5 1485.5 1113.9 1073.5 1142 1353.8 TRUE FALSE FALSE 1062.957223 1212.540409 1450.496128 1279.436167 1351.835593 1457.166563 1156.863496 1195.702901 1094.926277 1345.747537 0.78986377 0.901016257 1.077836733 0.950725253 1.004523921 1.082793408 0.859643777 0.888504617 0.81361938 1 10.39419207 -6.944604552 24.99831464 0.897856555 0.977859393 0.235750683 0.085793187 143.5594495 64783.50826 0.016493353 0.021676511 1.14E-07 6.944604552 0.080002838 NSSSSTIGSPSS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 NSSSSTIGSPSSR 13 0 Q5THJ4-2;Q5THJ4;H3BLS7;A0A2R8YD87 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 NSSSSTIGS(0.008)PS(0.073)S(0.919)R 90.498 0.017566 4215600 1318.4 819.96 1002.1 1108.5 793.38 1076 896.44 725.11 1176.6 1214.3 TRUE FALSE FALSE 1163.859151 845.2219957 1056.276557 1153.709421 734.853938 1055.477093 931.0159911 807.6535914 1128.10005 1207.07729 0.964196047 0.700221935 0.875069531 0.95578753 0.608787809 0.874407216 0.771297745 0.66909849 0.934571514 1 10.23730234 -6.944347158 0.45508205 1.010877771 0.730754527 0.362646211 0.104852871 0.602330965 0.293959824 0.040353165 0.06311831 1.14E-07 6.944347158 -0.280123244 KGS(ph)SGNASEVSVACLTER ddPTM_HeLa_CUDC101_4h_R1 2 KGSSGNASEVSVACLTER 18 1 F8WAN1;A0A494C1J1;Q69YQ0-2;Q69YQ0;C9J8U1 F8WAN1 SPECC1L-ADORA2A;SPECC1L Cytospin-A 1 0 KGS(0.783)S(0.214)GNAS(0.003)EVS(0.001)VACLTER;KGS(0.706)S(0.293)GNASEVSVACLTER ; 58.802 0.024226 72694000 3214.7 3655.3 3789.8 3649.1 4491 4874.1 4187 3540 3736.3 3249.2 TRUE FALSE FALSE 2837.877739 3767.91546 3994.688052 3797.926071 4159.707877 4781.134663 4348.493993 3942.979291 3582.288133 3229.873614 0.878634299 1.166582941 1.236793921 1.175874515 1.28788565 1.480285372 1.34633565 1.22078439 1.109110932 1 11.657262 -6.942300503 1.870623072 0.942375324 1.307373283 0.621925061 0.099481936 0.118602626 0.831176422 0.016657911 0.022341898 1.14E-07 6.942300503 0.364997959 ESS(ph)PIPSPTSDRK ddPTM_HeLa_CUDC101_4h_R1 2 ESSPIPSPTSDRK 13 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 ES(0.007)S(0.993)PIPSPTSDRK;ES(0.006)S(0.994)PIPSPTSDRK ; 190.35 4.18E-11 35019000 3464.7 3375.9 3626.7 3390.5 4417.7 3457.8 3652 3505.9 3636.1 3549.6 TRUE FALSE FALSE 3058.573118 3479.907478 3822.770372 3528.779245 4091.815072 3391.848226 3792.858863 3904.997485 3486.218419 3528.486821 0.866822883 0.986232245 1.083402196 1.000082875 1.159651511 0.961275583 1.074925047 1.106705985 0.988020813 1 11.78483391 -6.942229845 4.752705215 0.936541932 1.060926911 0.407351003 0.061517122 0.145964501 6.837597604 0.010975763 0.014445348 1.14E-07 6.942229845 0.124384979 PTHS(ph)GGGGGGGGGGGGGGGGR ddPTM_HeLa_CUDC101_4h_R1 2 PTHSGGGGGGGGGGGGGGGGR 21 0 Q13595;Q13595-4;Q13595-3 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 PT(0.1)HS(0.9)GGGGGGGGGGGGGGGGR;PT(0.112)HS(0.888)GGGGGGGGGGGGGGGGR ; 78.451 0.0013689 891230 285.82 198.689 0 173.702 54.669 0 169.54 0 206.5 282.524 TRUE FALSE FALSE 252.3166129 204.8103726 0 180.7863184 50.63617679 0 176.0792146 0 197.9879826 280.8435347 0.898424146 0.729268604 0 0.643726118 0.180300311 0 0.626965527 0 0.70497611 1 8.133622781 -6.942166 4.69915155 0.946762602 0.264903394 0.596397217 0.23665371 0.082059612 3.756337133 0.033690937 0.04434297 1.14E-07 6.942166 -0.681859208 MDS(ph)DEDEKEGEEEK ddPTM_HeLa_CUDC101_4h_R1 2 MDSDEDEKEGEEEK 14 1 Q96ST2-3;Q96ST2;Q96ST2-2 Q96ST2-3 IWS1 Protein IWS1 homolog 1 0 MDS(1)DEDEKEGEEEK;MDS(1)DEDEKEGEEEK ; 120.29 0.008782 45238000 9388.4 7071.3 7800.6 7419.9 6661.9 7150.4 6811.8 7118.9 8440.6 8666.1 TRUE FALSE FALSE 8287.905984 7289.158371 8222.324032 7722.515594 6170.464909 7014.018033 7074.533408 7929.2868 8092.674895 8614.553652 0.962081881 0.846144637 0.954468956 0.896449881 0.716283763 0.814205624 0.821230408 0.920452425 0.939418944 1 13.07256033 -6.941220359 0.73553308 0.99126561 0.824107186 0.419833368 0.062510426 0.335439038 0.370475689 0.014522703 0.021401964 1.14E-07 6.941220359 -0.167158424 DHANYEEDENGDIT(ph)PIKAK ddPTM_HeLa_CUDC101_4h_R1 2 DHANYEEDENGDITPIKAK 19 1 H3BSB3;H3BNT4;Q99547 H3BSB3 MPHOSPH6 M-phase phosphoprotein 6 1 0 DHANYEEDENGDIT(1)PIKAK;DHANYEEDENGDIT(1)PIKAK ; 92.236 0.0017311 26891000 5481.2 5854.9 6920 6802.1 9769.2 7491.5 6228.4 4092.6 7471.8 5850.6 TRUE FALSE FALSE 4838.702045 6035.282529 7294.116132 7079.519039 9048.545579 7348.612119 6468.631474 4558.485041 7163.809241 5815.800371 0.831992458 1.037738943 1.254189564 1.217290586 1.555855601 1.263559897 1.112251292 0.783810439 1.231783896 1 12.50576203 -6.941190311 4.095491744 0.920852866 1.213173575 0.08375404 0.206846165 0.189904611 6.567904401 0.031530837 0.041535229 1.15E-07 6.941190311 0.292320709 S(ph)PVFTPR ddPTM_HeLa_CUDC101_4h_R1 1 SPVFTPR 7 0 P52735-3 P52735-3 VAV2 Guanine nucleotide exchange factor VAV2 1 0 S(1)PVFTPR 96.668 0.0027652 0 2374.8 2001.6 1462.8 1944.9 2046.5 1724.7 1777.7 1453.5 2027.4 2233.5 TRUE FALSE FALSE 2096.429544 2063.266924 1541.883393 2024.221429 1895.533772 1691.804221 1846.266484 1618.960565 1943.829714 2220.215043 0.944246167 0.929309497 0.694474798 0.911723139 0.853761341 0.762000161 0.831571019 0.729190882 0.875514163 1 11.1164837 -6.940670093 7.642701223 0.971801861 0.804896262 0.492472753 0.067175591 0.109393539 12.1223087 0.009513119 0.012512158 1.15E-07 6.940670093 -0.166905599 VLDSVEAGDTT(ph)PPTK ddPTM_HeLa_CUDC101_4h_R1 3 VLDSVEAGDTTPPTK 15 0 Q8IZ21-3 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 VLDSVEAGDT(0.052)T(0.948)PPTK;VLDSVEAGDT(0.028)T(0.972)PPTK;VLDSVEAGDT(0.024)T(0.974)PPT(0.001)K ;; 180.3 1.72E-07 120271000 7936.6 7538.9 6796.6 6785.5 8462.5 7908.4 6943.9 7259 7869.2 6736.4 TRUE FALSE FALSE 7006.283779 7771.164573 7164.044755 7062.242019 7838.238235 7757.560446 7211.728549 8085.335218 7544.828245 6696.331593 1.046286863 1.160510716 1.069846177 1.054643415 1.170527195 1.158479137 1.07696706 1.207427545 1.126710668 1 12.70915525 -6.940528401 0.260529483 0.97727512 1.186673248 0.079316347 0.060823359 1.058124361 0.231699983 0.057502168 0.085476421 1.15E-07 6.940528401 0.209398129 LTPVSLSNS(ph)PIK ddPTM_HeLa_CUDC101_4h_R1 1 LTPVSLSNSPIK 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LTPVSLS(0.019)NS(0.981)PIK 176.4 3.92E-07 116390000 3385 2401.3 1938.7 2158 2201.3 2500.4 2270.6 1672 2480.3 2302.9 TRUE FALSE FALSE 2988.215431 2475.281207 2043.511986 2246.012568 2038.914485 2452.709036 2358.177803 1862.333722 2378.060984 2289.202248 1.305352305 1.081285504 0.892674288 0.981133305 0.890665945 1.071425226 1.030130826 0.81352957 1.038816464 1 11.16062921 -6.940277256 6.001818594 1.146652396 0.956241825 0.353850767 0.103210746 0.179376223 12.97301529 0.021041629 0.027689988 1.15E-07 6.940277256 -0.190410571 MVVS(ph)IAEDLLR ddPTM_HeLa_CUDC101_4h_R1 2 MVVSIAEDLLR 11 0 Q9P2D3-2;Q9P2D3-3;Q9P2D3 Q9P2D3-2 HEATR5B HEAT repeat-containing protein 5B 1 0 MVVS(1)IAEDLLR;MVVS(1)IAEDLLR ; 73.841 0.028597 68900000 6423.6 3714.2 4642.5 5904.3 3456.8 3326.03 4011.3 3325.69 4687.4 6620.2 TRUE FALSE FALSE 5670.635346 3828.6301 4893.487593 6145.102875 3201.798751 3262.591519 4166.017185 3704.273107 4494.183388 6580.822756 0.86169094 0.581785932 0.743598145 0.933789452 0.486534719 0.495772587 0.633054154 0.562889056 0.682921202 1 12.68405225 -6.940228227 0.319205261 1.030610583 0.492454515 0.199166099 0.154351227 0.72258371 0.20807952 0.096468525 0.148661471 1.15E-07 6.940228227 -0.538156068 SSPS(ph)PALEQPFR ddPTM_HeLa_CUDC101_4h_R1 1 SSPSPALEQPFR 12 0 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-6 SYNRG Synergin gamma 1 0 S(0.166)S(0.166)PS(0.669)PALEQPFR 164.92 5.22E-05 27577000 1358.9 1035.8 667.75 821.48 1011.8 1065.9 952.9 724.94 1064.2 958.79 TRUE FALSE FALSE 1199.611802 1067.71177 703.8505848 854.9835051 937.1615298 1045.569733 989.6536722 807.4642393 1020.333226 953.0870744 1.258659187 1.120266761 0.738495573 0.897067569 0.983290567 1.097034848 1.038366482 0.847209306 1.070556146 1 9.896464215 -6.939674114 24.99935467 1.125688621 0.944954351 0.377114344 0.111496558 69.20856561 28679.96761 0.021897325 0.028778723 1.15E-07 6.939674114 -0.180734271 S(ph)TSPFGIPEEASEMLEAKPK ddPTM_HeLa_CUDC101_4h_R1 2 STSPFGIPEEASEMLEAKPK 20 1 Q96D09 Q96D09 GPRASP2 G-protein coupled receptor-associated sorting protein 2 1 0 S(0.426)T(0.426)S(0.149)PFGIPEEASEMLEAKPK;S(0.333)T(0.333)S(0.333)PFGIPEEAS(0.001)EMLEAKPK ; 85.881 0.0014639 98570000 3302.1 2354.54 2666.6 2508.6 2605.2 2177.23 2256.41 1970.13 2232.36 3345.9 TRUE FALSE FALSE 2915.032844 2427.080587 2810.764462 2610.911551 2413.019586 2135.702965 2343.44049 2194.401636 2140.341176 3325.998438 0.876438428 0.729729924 0.84508893 0.785000835 0.725502321 0.642123863 0.704582559 0.659772299 0.643518395 1 11.69957178 -6.938739839 0.252545992 1.046850269 0.586347096 0 0.118723801 0.473932389 0.099571728 0.056958718 0.08425127 1.15E-07 6.938739839 -0.460503172 SILAKPSS(ph)SPDPR ddPTM_HeLa_CUDC101_4h_R1 1 SILAKPSSSPDPR 13 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 SILAKPS(0.028)S(0.486)S(0.486)PDPR 66.326 0.03449 101550000 7011.4 6540.7 6877.6 7040.6 7388 6780.4 7182 6637.8 7410.7 6813 TRUE FALSE FALSE 6189.534321 6742.211214 7249.42386 7327.7461 6843.001959 6651.075167 7459.012146 7393.420321 7105.227809 6772.475973 0.913924884 0.995531212 1.070424449 1.081989235 1.010413619 0.982074384 1.101371518 1.09168646 1.049132967 1 12.72546765 -6.936874627 4.639413653 0.959078733 1.053639979 0.255704832 0.048683276 0.138237991 5.991358781 0.007780827 0.010252965 1.16E-07 6.936874627 0.094561246 PVS(ph)PSSLLDTAISEEAR ddPTM_HeLa_CUDC101_4h_R1 2 PVSPSSLLDTAISEEAR 17 0 A0A0B4J2F2;P57059 A0A0B4J2F2 LOC102724428;SIK1 Serine/threonine-protein kinase SIK1 1 0 PVS(0.812)PS(0.157)S(0.031)LLDTAISEEAR;PVS(0.876)PS(0.117)S(0.007)LLDTAISEEAR ; 161.94 3.47E-05 82843000 2808.18 2048.9 1109.12 1155 1383.09 1322.01 1508.54 1083.1 2246.43 2625.01 TRUE FALSE FALSE 2479.009397 2112.02418 1169.082382 1202.105892 1281.062206 1296.794862 1566.724893 1206.395726 2153.831205 2609.396324 0.950031766 0.809391874 0.44802791 0.460683523 0.490941983 0.496971215 0.600416609 0.462327518 0.825413597 1 11.34950037 -6.936656272 2.96354693 0.975437074 0.495980456 0.900644068 0.065479018 0.035365646 0.633344081 0.008183719 0.010846945 1.16E-07 6.936656272 -0.479456618 DPSAS(ph)PGDAGEQAIR ddPTM_HeLa_CUDC101_4h_R1 1 DPSASPGDAGEQAIR 15 0 P18206-2;P18206 P18206-2 VCL Vinculin 1 0 DPS(0.086)AS(0.914)PGDAGEQAIR 215.93 4.55E-24 40425000 1557.5 1019.1 990.75 693.24 438.37 931.51 634.14 643 743.3 1572.9 TRUE FALSE FALSE 1374.932211 1050.497263 1044.312942 721.5133236 406.0323185 913.7429988 658.5989922 716.1965209 712.6608594 1563.544321 0.879368875 0.671869194 0.667913872 0.461460103 0.259687118 0.584404923 0.421221825 0.458059622 0.45579831 1 10.6106044 -6.935126242 0.94874918 0.963704274 0.428298206 0.273604966 0.181601497 0.116446431 0.20776526 0.017677738 0.025127709 1.16E-07 6.935126242 -0.535406068 TSQCSSPSLSASPGS(ph)PTRPQIR ddPTM_HeLa_CUDC101_4h_R1 1 TSQCSSPSLSASPGSPTRPQIR 22 1 P37275-3;P37275-4;P37275-5;P37275;P37275-2;H0YMD3;H0YND9 P37275-3 ZEB1 Zinc finger E-box-binding homeobox 1 1 0 TSQCSSPSLSASPGS(0.747)PT(0.253)RPQIR 112.82 6.61E-06 55058000 626.92 515.95 415.88 395.16 465.99 564.2 466.85 465.03 435.72 565.14 TRUE FALSE FALSE 553.4333879 531.8458079 438.3637308 411.2763328 431.6148461 553.438825 484.8565609 517.9671355 417.7594372 561.7785221 0.985145153 0.946717945 0.780314151 0.732096933 0.768300725 0.985154831 0.863074222 0.922013062 0.743637253 1 9.133857658 -6.933967362 5.167825677 0.99182819 0.841337562 0 0.105122412 0.131589148 6.824521086 0.012061202 0.015893372 1.16E-07 6.933967362 -0.150490628 RPES(ph)PSEIS(ph)PIK ddPTM_HeLa_CUDC101_4h_R1 2 RPESPSEISPIK 12 1 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 2 0 RPES(0.999)PS(0.001)EIS(1)PIK;RPES(1)PSEIS(1)PIK ; 129.05 0.00096974 85836000 22977.3 16871.2 16118.7 15887.5 15803.2 17011.5 14435.4 13544.4 18098.4 20581.3 TRUE FALSE FALSE 20283.93573 17390.98167 16990.12568 16535.46092 14637.42942 16687.03398 14992.17821 15086.23975 17352.37629 20458.88151 0.991448908 0.850045574 0.830452323 0.808228979 0.715455995 0.815637647 0.732795593 0.737393182 0.8481586 1 14.32043965 -6.933870185 1.146727015 1.000679891 0.757366686 0.615759744 0.057962131 0.079430591 0.205915786 0.005932479 0.008247085 1.16E-07 6.933870185 -0.243313205 GLVAAYSGDS(ph)DNEEELVER ddPTM_HeLa_CUDC101_4h_R1 4 GLVAAYSGDSDNEEELVER 19 0 P52756 P52756 RBM5 RNA-binding protein 5 1 0 GLVAAYSGDS(1)DNEEELVER;GLVAAYSGDS(1)DNEEELVER;GLVAAYS(0.006)GDS(0.994)DNEEELVER;GLVAAYSGDS(1)DNEEELVER ;;; 348.4 1.84E-218 179245200 12503.4 10122.8 8973.9 8912.1 9723.6 9873.5 9745.5 8917 11566.9 10945.1 TRUE FALSE FALSE 11037.77041 10434.67147 9459.056179 9275.573959 9006.3094 9685.179438 10121.3872 9932.075236 11090.10749 10879.99806 1.014501137 0.95906924 0.869398701 0.852534523 0.827785938 0.890182092 0.930274725 0.912874725 1.019311532 1 13.40939068 -6.933271714 3.300717955 1.006486506 0.879544109 0.818974724 0.02783633 0.079067769 1.75529604 0.005113026 0.006768876 1.17E-07 6.933271714 -0.126942397 KSASDSGCDPASK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 KSASDSGCDPASKK 14 2 Q7LBC6;H0Y9V5 Q7LBC6 KDM3B Lysine-specific demethylase 3B 0 1 ; KSASDSGCDPASK(1)K;KSASDSGCDPASK(1)K 123.76 0.0068085 2596000 2163.16 2449.3 2629.1 3006.3 2866.8 2785 2430.7 2886.7 1323.63 1652.02 FALSE TRUE FALSE 1909.597664 2524.76003 2771.237099 3128.909908 2655.321875 2731.880765 2524.452913 3215.31026 1269.069411 1642.193712 1.16283338 1.53743131 1.687521441 1.90532328 1.616935844 1.663555734 1.537244294 1.957936044 0.772789107 1 10.6814086 -7.211996481 1.773213613 1.060632496 1.723051842 0.830307095 0.150927715 0.086170369 0.514391375 0.022395138 0.027069623 6.14E-08 7.211996481 0.662419346 TVAISDAAQLPHDYCT(ph)TPGGTLFSTTPGGT(ph)RIIYDRK ddPTM_HeLa_CUDC101_4h_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRK 37 2 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 0 TVAISDAAQLPHDY(0.239)CT(0.339)T(0.339)PGGT(0.068)LFS(0.096)T(0.172)T(0.172)PGGT(0.439)RIIY(0.138)DRK 65.035 8.78E-05 8976100 417.03 715.94 819.33 824.94 1327 855.12 807.22 1164.1 757.53 422.89 TRUE FALSE FALSE 368.1463756 737.9972628 863.6254581 858.5846189 1229.109854 838.8100107 838.3547458 1296.616439 726.3042928 420.3746315 0.875757831 1.755570407 2.054418591 2.042427289 2.923844023 1.995386848 1.99430385 3.084430747 1.727754813 1 8.715531799 -6.932444124 1.554938659 0.931149896 2.382859222 0.568120267 0.43603258 0.11933579 0.573917007 0.06101331 0.082880344 1.17E-07 6.932444124 1.451709326 MQRICSFT(ph)T(ph)FMRNK ddPTM_HeLa_CUDC101_4h_R1 1 MQRICSFTTFMRNK 14 2 G3V5S6 G3V5S6 PPP1R36 2 0 MQRICS(0.009)FT(0.996)T(0.996)FMRNK 70.089 0.0029191 0 1452.8 728.77 466.33 366.38 487.5 620.72 648.1 886.08 608.01 379.53 TRUE FALSE FALSE 1282.504986 751.2225399 491.5412104 381.32256 451.5380962 608.8808002 673.0974341 986.9477655 582.9475705 377.2725387 3.399412506 1.99119327 1.302880968 1.010735002 1.196848564 1.613901723 1.784114573 2.616007433 1.545163007 1 8.559463281 -6.931965342 7.348482171 2.161783633 1.55810267 0.052597114 0.702233801 0.486958244 44.45308013 0.158613604 0.208721291 1.17E-07 6.931965342 -0.603680962 DFQEYVEPGEDFPAS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 3 DFQEYVEPGEDFPASPQR 18 0 Q9Y6G9;E9PHI6;C9JGM7 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 DFQEYVEPGEDFPAS(1)PQR;DFQEYVEPGEDFPAS(1)PQR;DFQEYVEPGEDFPAS(1)PQR ;; 161.55 2.26E-05 97545400 8421.1 6949.6 6142.6 6401.7 6354.8 7054 6079.2 5597.4 6849.6 7732.6 TRUE FALSE FALSE 7433.991424 7163.708939 6474.687536 6662.788997 5886.019065 6919.456703 6313.67678 6234.585391 6567.256589 7686.606151 0.967135726 0.931972941 0.842333718 0.866805046 0.765750053 0.900196597 0.821386794 0.811097286 0.854376621 1 12.90813103 -6.930671095 1.378293623 0.987623371 0.830134241 0.399195667 0.053944714 0.112211108 0.421972378 0.005885117 0.008063093 1.17E-07 6.930671095 -0.157489129 TTQSMQDFPVVDS(ph)EEEAEEEFQK ddPTM_HeLa_CUDC101_4h_R1 3 TTQSMQDFPVVDSEEEAEEEFQK 23 0 Q9UBB9 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 TTQSMQDFPVVDS(1)EEEAEEEFQK;TTQSMQDFPVVDS(1)EEEAEEEFQK;TTQSMQDFPVVDS(1)EEEAEEEFQK ;; 184.03 7.44E-14 49920000 10394.2 8205.7 8003.8 7803.3 8569.4 8458.1 7735.6 7115.4 8916 9117.6 TRUE FALSE FALSE 9175.807633 8458.507891 8436.509638 8121.552303 7937.252435 8296.775835 8033.964683 7925.388375 8548.478706 9063.36811 1.012405931 0.933263196 0.930836035 0.896085451 0.875750862 0.91541861 0.886421536 0.87444185 0.943190059 1 13.14583157 -6.930392107 1.48548001 1.006607049 0.891006752 0.697686913 0.025234767 0.070294593 0.308007453 0.00280079 0.003818393 1.17E-07 6.930392107 -0.115600297 KSDGIYIINLK ddPTM_HeLa_CUDC101_4h_R1 1 KSDGIYIINLK 11 1 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 RPSA 40S ribosomal protein SA 0 0 114.86 0.0031492 0 408.44 393.95 276.18 262.4 307.38 499.36 532.86 415.37 376.2 338.7 FALSE FALSE TRUE 360.5632824 406.0871326 291.1111262 273.1018062 284.7051898 489.83554 553.4125887 462.6540418 360.6928768 336.6853973 1.070920465 1.2061323 0.864638409 0.811148355 0.845611933 1.454876106 1.64370832 1.374143475 1.071305378 1 8.39525734 -5.186024079 6.226085178 1.006821159 1.513821392 0.759772569 0.130733172 0.089790028 5.962616498 0.019127159 0.049408067 6.52E-06 5.186024079 0.507000233 KSDGSGTYTK(ac)LQNTQVR ddPTM_HeLa_CUDC101_4h_R1 1 KSDGSGTYTKLQNTQVR 17 2 H3BTW3;Q3L8U1-2;Q3L8U1-3;Q3L8U1;H3BSP3 H3BTW3 CHD9 Chromodomain-helicase-DNA-binding protein 9 0 1 KSDGSGTYTK(1)LQNTQVR 87.419 0.0050057 0 0 147.59 0 255.56 296.31 253.22 312.48 192.56 154.71 179.71 FALSE TRUE FALSE 0 152.137073 0 265.9828414 274.4518016 248.3902504 324.5324583 214.480252 148.3327883 178.6410769 0 0.851635445 0 1.488923186 1.536330873 1.390443087 1.816673208 1.200621132 0.830339757 1 7.480920043 -6.239833822 23.51814827 0.509239609 1.502357022 0.655530774 0.344025395 209.279033 227804.6323 0.06297908 0.104356978 5.76E-07 6.239833822 0.993117412 KSDIDEIVLVGGSTR ddPTM_HeLa_CUDC101_4h_R1 2 KSDIDEIVLVGGSTR 15 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ; ; 112.67 0.002139 44481000 3841.9 3821.9 3478.1 3835.2 4070.7 4673.2 4024.8 4054 4145.4 3852.2 FALSE FALSE TRUE 3391.558306 3939.648209 3666.136607 3991.616033 3770.412571 4584.066496 4180.037884 4515.490973 3974.524857 3829.286943 0.885689257 1.028820318 0.957394069 1.042391467 0.984625239 1.197107076 1.091596933 1.179198906 1.037928188 1 11.90286006 -5.519986517 0.965795876 0.950899369 1.165731126 0.555681735 0.060418002 0.287742361 0.482203106 0.00986548 0.040478869 3.02E-06 5.519986517 0.214831756 KSDVEAIFSK ddPTM_HeLa_CUDC101_4h_R1 2 KSDVEAIFSK 10 1 P07910-2;P07910;G3V4C1;B2R5W2;G3V2Q1;P07910-4;B4DY08;G3V4W0;G3V576;G3V575;A0A0G2JPF8;G3V555;G3V251;G3V3K6;G3V5X6;P0DMR1;O60812;B7ZW38;B4DSU6;G3V4M8;G3V2H6;A0A0G2JNQ3;B2RXH8 P07910-2;A0A0G2JNQ3 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 0 0 ; ; 107.17 0.0098794 33008000 14270.8 12625.6 11190.5 12693.1 14435.2 12943.3 12715.9 12080.5 12946.2 11249.6 FALSE FALSE TRUE 12597.99846 13014.57977 11795.49228 13210.77948 13370.34405 12696.42812 13206.35652 13455.69529 12412.55216 11182.68688 1.126562748 1.163815093 1.054799478 1.181360046 1.19562894 1.135364716 1.180964527 1.203261384 1.109979408 1 13.44897925 -13.52287875 0.127538634 0.437743331 1.231906052 0.366003784 0.0495859 28.0575137 0.25494884 3.98265517 0.134668108 3.00E-14 13.52287875 0.794162721 KGPGQPS(ph)SPQRLDR ddPTM_HeLa_CUDC101_4h_R1 1 KGPGQPSSPQRLDR 14 2 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 KGPGQPS(0.5)S(0.5)PQRLDR 86.016 0.015802 51536000 2630.6 2496.4 2978 2706 3457.7 2935.3 2489.4 3212.1 3038.4 2400.3 TRUE FALSE FALSE 2322.245056 2573.311125 3138.999688 2816.362376 3202.63236 2879.314043 2585.416992 3577.75248 2913.155866 2386.022909 0.973270226 1.078493889 1.315578185 1.180358481 1.342247112 1.206741994 1.083567548 1.499462753 1.220925355 1 11.22039218 -6.928460734 3.94344356 0.988477496 1.258525962 0.329093061 0.127651592 0.104466794 3.243136169 0.015626107 0.020657307 1.18E-07 6.928460734 0.270048465 LYSLLGIDLTAPSNNSSPRDS(ph)PCKENK ddPTM_HeLa_CUDC101_4h_R1 1 LYSLLGIDLTAPSNNSSPRDSPCKENK 27 2 A3KN83-4;A3KN83-3;A3KN83-2;A3KN83 A3KN83-4 SBNO1 Protein strawberry notch homolog 1 1 0 LYSLLGIDLTAPS(0.046)NNS(0.046)S(0.261)PRDS(0.647)PCKENK 89.756 2.67E-06 11199000 1690.4 1445.8 1850.2 2048.9 1956.8 1577.6 1350.3 1591.8 1182.1 1311.8 TRUE FALSE FALSE 1492.253874 1490.343384 1950.227409 2132.462998 1812.450762 1547.509908 1402.381523 1773.004078 1133.373338 1303.997355 1.144368789 1.142903686 1.495576199 1.635327702 1.389919048 1.186743134 1.075448135 1.359668461 0.869153095 1 10.34872523 -6.927783268 5.90639579 1.07177257 1.350308197 0.484800682 0.160658827 0.162473273 10.00533632 0.027277295 0.035942327 1.18E-07 6.927783268 0.278535628 S(ph)PGLVPPS(ph)PEFAPR ddPTM_HeLa_CUDC101_4h_R1 3 SPGLVPPSPEFAPR 14 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 2 0 S(1)PGLVPPS(1)PEFAPR;S(1)PGLVPPS(1)PEFAPR;S(1)PGLVPPS(1)PEFAPR ;; 190.18 2.14E-10 36632000 6107.7 4298 4056.83 4125.06 4131.24 4206.33 4061.4 2871.38 5019.6 5065.1 TRUE FALSE FALSE 5391.764665 4430.416286 4276.154501 4293.297777 3826.486656 4126.101263 4218.049558 3198.246293 4812.689963 5034.97256 1.07086277 0.879928586 0.849290527 0.852695367 0.759981631 0.819488332 0.837750257 0.6352063 0.955852273 1 12.2977682 -6.927724075 1.714664972 1.033821318 0.788335686 0.673221263 0.06669302 0.122342744 0.719459366 0.011066693 0.014986414 1.18E-07 6.927724075 -0.245485632 LSPSPS(ph)LR ddPTM_HeLa_CUDC101_4h_R1 1 LSPSPSLR 8 0 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 LS(0.004)PS(0.258)PS(0.738)LR 93.598 0.024705 6207500 6550.8 5061.1 4952.3 4991.6 5601.1 4828.4 4748.2 4435.4 5875 5953.2 TRUE FALSE FALSE 5782.925154 5217.026492 5220.036318 5195.179024 5187.918012 4736.306315 4931.339665 4940.308007 5632.830013 5917.790102 0.977210252 0.881583565 0.882092171 0.877891736 0.876664755 0.800350508 0.833307633 0.834823122 0.951846875 1 12.53084281 -6.925582948 0.69781837 0.998481361 0.829420407 0.821623118 0.026123834 0.129788241 0.130173513 0.005555357 0.008352401 1.19E-07 6.925582948 -0.169060954 TDENIDTPGT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 TDENIDTPGTPK 12 0 B8ZZI9;Q6ULP2-7;Q6ULP2-8;Q6ULP2-6;Q6ULP2;Q6ULP2-9;A0A0U1RR74 B8ZZI9 AFTPH Aftiphilin 1 0 TDENIDT(0.013)PGT(0.987)PK;TDENIDT(0.006)PGT(0.994)PK;TDENIDT(0.02)PGT(0.98)PK;TDENIDT(0.015)PGT(0.984)PK ;;; 130.47 7.06E-05 13326400 12745.3 11206.8 11817.3 11814.4 13353.4 12239.8 12213.6 11278.7 12055 11124 TRUE FALSE FALSE 11251.31525 11552.06822 12456.17898 12296.2423 12368.34629 12006.34621 12684.68264 12562.62162 11558.0878 11057.83395 1.017497215 1.044695396 1.126457409 1.111993755 1.11851438 1.085777401 1.147121823 1.136083402 1.045239768 1 13.43278119 -6.9246967 2.476371425 1.008117348 1.120791987 0.839153288 0.020052519 0.057741956 0.718929254 0.002866663 0.003833263 1.19E-07 6.9246967 0.112674638 SCQKS(ph)PAQQEPPQR ddPTM_HeLa_CUDC101_4h_R1 1 SCQKSPAQQEPPQR 14 1 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2 A0A669KBI3 AFF1 AF4/FMR2 family member 1 1 0 S(0.232)CQKS(0.768)PAQQEPPQR 82.709 0.012587 13533000 2494.2 2568.1 3090.7 3469.3 3575.8 3329.4 3215.3 2943.4 2445 2181.4 TRUE FALSE FALSE 2201.833657 2647.220117 3257.792591 3610.79305 3312.020358 3265.897242 3339.315198 3278.464758 2344.216065 2168.424936 1.015406907 1.220803208 1.502377388 1.66516857 1.527385294 1.506114963 1.539972698 1.511910652 1.08106858 1 11.08243179 -6.924464 2.320866715 1.006635399 1.550542674 0.957473525 0.048959986 0.032981117 0.360049064 0.007653127 0.010255513 1.19E-07 6.924464 0.543907275 LKEDILENEDEQNS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 4 LKEDILENEDEQNSPPK 17 1 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK;LKEDILENEDEQNS(1)PPK ;;; 149.18 7.21E-05 463599000 27853.7 21969.3 21397.5 21216.2 21735.1 23842.3 20422.8 17629.3 22840.7 25273.4 TRUE FALSE FALSE 24588.73151 22646.14809 22554.31357 22081.48834 20131.74498 23387.54785 21210.51424 19636.14825 21899.19668 25123.07269 0.978731058 0.901408373 0.897752988 0.878932629 0.80132495 0.930919085 0.844264334 0.781598194 0.871676683 1 14.6167253 -6.923590405 0.834289722 0.996369984 0.842808622 0.312109305 0.055005682 0.198693863 0.277220775 0.00819934 0.011967333 1.19E-07 6.923590405 -0.153561362 AGQEPS(ph)PKPGTDVIPAAPR ddPTM_HeLa_CUDC101_4h_R1 2 AGQEPSPKPGTDVIPAAPR 19 1 Q4VC44-2;Q4VC44;Q4VC44-3;I3L0R3;I3L231 Q4VC44-2 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 1 0 AGQEPS(0.995)PKPGT(0.005)DVIPAAPR;AGQEPS(0.997)PKPGT(0.003)DVIPAAPR ; 60.528 0.018239 77298000 1487.91 1215.24 1021.27 1143.96 1034.18 1230.65 1042.04 1118.61 1133.02 1317.71 TRUE FALSE FALSE 1313.499445 1252.680104 1076.482945 1190.615633 957.8906018 1207.177402 1082.231832 1245.948041 1086.316436 1309.872202 1.002769158 0.95633765 0.82182288 0.908955569 0.731285541 0.921599374 0.826211771 0.951198169 0.829330094 1 10.35521035 -6.923512958 4.193891989 1.000579081 0.858049792 0.117314728 0.079533931 0.106191748 3.631840344 0.008576902 0.011342147 1.19E-07 6.923512958 -0.142529288 KS(ph)TAALEEDAQILK ddPTM_HeLa_CUDC101_4h_R1 2 KSTAALEEDAQILK 14 1 B1ALK7;A0A2R8YG42;Q14155-6;Q14155-1;Q14155-5;Q14155-2;Q14155-3;Q14155;E9PDQ5;Q15052-2;Q15052 B1ALK7 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6 1 0 KS(0.765)T(0.235)AALEEDAQILK;KS(0.806)T(0.194)AALEEDAQILK ; 130.61 0.00043783 37746000 8928.2 8351.5 9952.5 8860.5 12662.1 11505.9 9361.3 5370.2 7253.2 8303.4 TRUE FALSE FALSE 7881.64993 8608.799816 10490.56225 9221.869488 11728.04211 11286.44413 9722.368477 5981.521861 6954.220026 8254.011008 0.954887257 1.042983806 1.270965382 1.11725917 1.42089005 1.367389033 1.177896233 0.724680626 0.842526139 1 13.01087965 -6.922768207 5.06002221 0.979523023 1.195770261 0.258540995 0.182841152 0.221573747 10.28643562 0.028641232 0.037803541 1.19E-07 6.922768207 0.216247238 MGSKS(ph)PGNTSQPPAFFSK ddPTM_HeLa_CUDC101_4h_R1 1 MGSKSPGNTSQPPAFFSK 18 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;Q9Y618-2;H7C184 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 MGS(0.23)KS(0.683)PGNT(0.047)S(0.02)QPPAFFS(0.02)K 60.347 0.023256 72007000 1654.8 1938 2134 2037.5 2640.3 1932.3 2384.7 2557.9 2211.8 1870.1 TRUE FALSE FALSE 1460.826853 1997.707483 2249.370495 2120.598057 2445.530329 1895.444597 2476.678678 2849.080997 2120.628668 1858.976562 0.785823169 1.074627579 1.210004763 1.140734155 1.315525101 1.019617264 1.332280744 1.532607272 1.140750621 1 10.86029287 -6.922312953 2.716941667 0.899145602 1.251534859 0.380307629 0.155125506 0.151315266 2.271320995 0.024606231 0.032839423 1.20E-07 6.922312953 0.352389257 AGDTS(ph)DQEGHSLEEK ddPTM_HeLa_CUDC101_4h_R1 1 AGDTSDQEGHSLEEK 15 0 A0A087WU18;Q99607 A0A087WU18 ELF4 ETS-related transcription factor Elf-4 1 0 AGDT(0.285)S(0.715)DQEGHSLEEK 107.41 0.0019531 34643000 8696.2 7465.2 7146.1 6364.3 6573.8 6571.4 6382.5 6228.2 8691.5 8525.4 TRUE FALSE FALSE 7676.844619 7695.193964 7532.439782 6623.863663 6088.863871 6446.061494 6628.675163 6937.193113 8333.232691 8474.690542 0.905855451 0.908020644 0.88881591 0.781605373 0.718476249 0.760625 0.782173122 0.81857775 0.983308199 1 13.04894497 -6.920937507 0.590599052 0.977891113 0.759456976 0.843175105 0.036206519 0.227286204 0.169761432 0.012022271 0.018663778 1.20E-07 6.920937507 -0.218434137 ELSSEPQT(ph)PPAQK ddPTM_HeLa_CUDC101_4h_R1 2 ELSSEPQTPPAQK 13 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 ELSS(0.001)EPQT(0.999)PPAQK;ELSS(0.001)EPQT(0.999)PPAQK ; 208.68 5.48E-23 25806000 11585.3 11494.4 12952.2 14050.1 14726.4 12362.7 12969.9 10633.1 10555.9 11971.5 TRUE FALSE FALSE 10227.2887 11848.52884 13652.43511 14623.12381 13640.06281 12126.9021 13470.15339 11843.52912 10120.78133 11900.29299 0.859414866 0.995650179 1.147235209 1.228803679 1.146195546 1.019042313 1.131917794 0.995230045 0.850464887 1 13.53870947 -6.91962664 4.595606308 0.933261074 1.114350597 0.604968514 0.074724572 0.125653844 4.933715196 0.013265511 0.017534751 1.20E-07 6.91962664 0.181089523 QNSPAGNKENIKPNET(ph)SPSFSK ddPTM_HeLa_CUDC101_4h_R1 1 QNSPAGNKENIKPNETSPSFSK 22 2 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHH4;A0A5F9ZHX3;F8W0B5;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 QNSPAGNKENIKPNET(0.561)S(0.409)PS(0.028)FS(0.002)K 67.227 0.0045384 54134000 618.94 576.38 667.57 716.19 618.71 679.93 612.12 764.86 715.88 549.86 TRUE FALSE FALSE 546.3887915 594.1375846 703.6608535 745.3993238 573.0689959 666.9614681 635.7296734 851.9285707 686.3711234 546.5894083 0.999632966 1.086990665 1.287366427 1.363728079 1.048445117 1.220223916 1.163084509 1.558626197 1.255734401 1 9.094313694 -6.919558264 3.465256902 1.000865785 1.259858743 0.217242637 0.149043556 0.146209556 3.522830966 0.019699855 0.026156651 1.20E-07 6.919558264 0.258992958 QPPYQLRPSLFVLS(ph)PIKEPAK ddPTM_HeLa_CUDC101_4h_R1 1 QPPYQLRPSLFVLSPIKEPAK 21 2 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 QPPY(0.001)QLRPS(0.061)LFVLS(0.938)PIKEPAK 64.331 0.00968 23110000 1246.7 1030.1 839.52 781.23 955.07 922.46 822.51 1400.7 1030.9 1083.6 TRUE FALSE FALSE 1100.563716 1061.83616 884.9069906 813.0919362 884.6163889 904.8656124 854.2344862 1560.150026 988.4058657 1077.154699 1.02173227 0.985778701 0.821522657 0.754851589 0.821252871 0.840051678 0.79304717 1.44839922 0.91760809 1 10.07300975 -6.91917383 7.319891383 1.009929738 0.893247745 0.016479848 0.189559183 0.454169163 35.02740442 0.0286501 0.037715748 1.20E-07 6.91917383 -0.116681992 HLFS(ph)STENLAAGSWK ddPTM_HeLa_CUDC101_4h_R1 1 HLFSSTENLAAGSWK 15 0 Q6WKZ4;E7EX40;Q6WKZ4-2;Q6WKZ4-3 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 0 HLFS(0.4)S(0.4)T(0.2)ENLAAGSWK 77.795 0.015806 46762000 5183.5 3522.3 2880.7 3150 3264.1 3681 3166.5 2356 2909.2 3245.6 TRUE FALSE FALSE 4575.897988 3630.817888 3036.439356 3278.470615 3023.313846 3610.791058 3288.632966 2624.197517 2789.281545 3226.295027 1.418313561 1.125383097 0.941153655 1.016171983 0.937085363 1.119175719 1.019321835 0.813378037 0.864546336 1 11.65566266 -6.919160903 5.258742447 1.201055842 0.984438778 0.017532649 0.159721746 0.211663102 10.1953841 0.02742826 0.036203078 1.20E-07 6.919160903 -0.216617064 GAASTLVPGVSETSAS(ph)PGSPSVR ddPTM_HeLa_CUDC101_4h_R1 1 GAASTLVPGVSETSASPGSPSVR 23 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 GAASTLVPGVS(0.041)ET(0.271)S(0.041)AS(0.615)PGS(0.033)PSVR 258.81 6.51E-73 67794000 4020.8 3445 2935.9 2870.8 3820.5 3576.3 3866.1 2124.6 3221.8 3694 TRUE FALSE FALSE 3549.487919 3551.136367 3094.623635 2987.883633 3538.669327 3508.088036 4015.216772 2366.455876 3088.99604 3672.027924 0.966628793 0.967077713 0.842756019 0.813687612 0.963682575 0.955354401 1.093460305 0.64445476 0.841223461 1 11.84236131 -6.918446592 7.579802557 0.983348494 0.89857125 0.007614978 0.118788519 0.375531627 30.12254463 0.016712246 0.021996486 1.21E-07 6.918446592 -0.084777244 HS(ph)YPPALGSPGALAGAGVGAAGPLER ddPTM_HeLa_CUDC101_4h_R1 4 HSYPPALGSPGALAGAGVGAAGPLER 26 0 Q96IF1;H0YJL9 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 HS(1)YPPALGSPGALAGAGVGAAGPLER;HS(1)YPPALGSPGALAGAGVGAAGPLER;HS(0.55)Y(0.45)PPALGSPGALAGAGVGAAGPLER;HS(0.997)Y(0.003)PPALGSPGALAGAGVGAAGPLER ;;; 165.94 4.96E-12 142698000 6362.83 4968.19 4255.87 4081.29 4358.58 5039.89 4370.57 2811.78 5757.68 5850.31 TRUE FALSE FALSE 5616.988713 5121.254045 4485.955206 4247.742647 4037.056237 4943.762495 4539.144349 3131.86167 5520.345993 5815.512096 0.96586313 0.880619619 0.771377504 0.730415925 0.694187575 0.850099254 0.780523585 0.538535836 0.949245037 1 12.50569052 -6.918382435 1.511200542 0.987326801 0.726023324 0.690021899 0.075070673 0.143901944 0.65438491 0.013035699 0.017847021 1.21E-07 6.918382435 -0.261303477 SNT(ph)PMGDKDDDDDDDADEK ddPTM_HeLa_CUDC101_4h_R1 3 SNTPMGDKDDDDDDDADEK 19 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 S(0.04)NT(0.96)PMGDKDDDDDDDADEK;S(0.017)NT(0.983)PMGDKDDDDDDDADEK;S(0.07)NT(0.93)PMGDKDDDDDDDADEK ;; 81.606 0.0067709 110477600 11191.6 7663.2 7005.6 7447.12 7396.7 7708.8 6795.29 4788.21 7200.7 8224.3 TRUE FALSE FALSE 9879.737613 7899.294109 7384.343927 7750.845743 6851.060177 7561.767484 7057.386612 5333.280472 6903.884098 8175.381498 1.2084742 0.966229418 0.90324151 0.948071444 0.838011068 0.924943684 0.863248597 0.652358605 0.844472408 1 12.99707034 -6.917831771 2.710028075 1.098249171 0.859220785 0.192762488 0.120497209 0.162532009 2.427019328 0.017899463 0.02392546 1.21E-07 6.917831771 -0.239028386 KAKPAMPQDSVPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 KAKPAMPQDSVPSPR 15 2 P53396 P53396 ACLY ATP-citrate synthase 1 0 KAKPAMPQDS(0.003)VPS(0.997)PR;KAKPAMPQDS(0.003)VPS(0.997)PR ; 77.357 0.01049 28656000 5200.1 5311.4 6335 6051.4 7203.4 5998.6 5892.7 5909.9 6462.7 5554.4 TRUE FALSE FALSE 4590.552161 5475.037938 6677.489262 6298.202248 6672.019533 5884.186699 6119.983413 6582.659127 6196.304771 5521.362182 0.831416598 0.991609997 1.20939164 1.140697176 1.208400991 1.065712863 1.10841912 1.192216506 1.122242042 1 12.43080852 -6.917022527 4.95663798 0.919907064 1.14904443 0.426620775 0.085608139 0.088775416 3.869916271 0.012045897 0.015913661 1.21E-07 6.917022527 0.229137366 SS(ph)PQLDPLR ddPTM_HeLa_CUDC101_4h_R1 2 SSPQLDPLR 9 0 Q8ND56-3;Q8ND56-2;Q8ND56 Q8ND56-3 LSM14A Protein LSM14 homolog A 1 0 S(0.412)S(0.588)PQLDPLR;S(0.401)S(0.599)PQLDPLR ; 126.71 0.0040822 61721300 9412.9 7234.6 5956.6 7241.9 6517.8 6841.2 5988.3 6001.2 6418.5 7507.1 TRUE FALSE FALSE 8309.534131 7457.489451 6278.631814 7537.255984 6036.994879 6710.715508 6219.270737 6684.35235 6153.926713 7462.447435 1.113513255 0.999335609 0.841363623 1.010024667 0.808983237 0.899264694 0.833408984 0.895731917 0.824652604 1 12.86543315 -6.916970249 4.737356615 1.053815896 0.883173099 0.09364708 0.092446218 0.101904841 4.148569879 0.010197855 0.01347985 1.21E-07 6.916970249 -0.170642797 S(ph)PALPPVWDVSASAK ddPTM_HeLa_CUDC101_4h_R1 2 SPALPPVWDVSASAK 15 0 G3V471;P56179;P56179-2;P56179-3 G3V471 DLX6 Homeobox protein DLX-6 1 0 S(1)PALPPVWDVSASAK;S(1)PALPPVWDVSASAK ; 110.84 0.0023924 58888000 9324.9 7305.1 7008.7 6559.4 5518.4 6060.9 6929.8 6788 7387.2 8832.5 TRUE FALSE FALSE 8231.849358 7530.161472 7387.611522 6826.920684 5111.318626 5945.298431 7197.084707 7560.718482 7082.696489 8779.963897 0.937572119 0.857652897 0.841417073 0.777556806 0.582157135 0.677143836 0.819716891 0.861133209 0.806688566 1 13.09999929 -6.916461624 1.09271862 0.977628763 0.736713096 0.347498247 0.091601772 0.218099901 0.514312582 0.015723428 0.022172787 1.21E-07 6.916461624 -0.240915667 GAANASGSS(ph)PDAPAKDAR ddPTM_HeLa_CUDC101_4h_R1 3 GAANASGSSPDAPAKDAR 18 1 E7EPJ7;O75962-5;O75962-4;O75962 E7EPJ7 TRIO Triple functional domain protein 1 0 GAANASGS(0.04)S(0.96)PDAPAKDAR;GAANAS(0.002)GS(0.036)S(0.962)PDAPAKDAR;GAANASGS(0.046)S(0.954)PDAPAKDAR ;; 181.64 2.85E-11 45888500 8904.4 9275.5 8816.4 9643.9 11533.7 10046.3 9632.1 10315.7 9436.5 7710.3 TRUE FALSE FALSE 7860.63973 9561.267161 9293.041252 10037.21993 10682.88193 9854.683566 10003.61332 11489.99759 9047.523476 7664.438793 1.025598865 1.247484313 1.212488155 1.309583154 1.393824417 1.285767143 1.30519841 1.499130974 1.180454789 1 12.90396444 -6.915553896 0.94234648 1.001653699 1.363583202 0.654495905 0.085092496 0.124362227 0.219155882 0.012651141 0.018203211 1.21E-07 6.915553896 0.361929503 EGDPVSLSTPLETEFGS(ph)PSELS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 EGDPVSLSTPLETEFGSPSELSPR 24 0 E9PMR3;E9PMG4;Q9BUR4 E9PMR3 WRAP53 Telomerase Cajal body protein 1 2 0 EGDPVSLST(0.001)PLET(0.009)EFGS(0.967)PS(0.051)ELS(0.971)PR;EGDPVSLSTPLETEFGS(0.996)PS(0.27)ELS(0.733)PR ; 163.75 8.78E-09 12053100 7063.1 5890.9 4993.7 5127.7 6382.7 5900.1 5203.8 5078.6 6433.5 6266.5 TRUE FALSE FALSE 6235.174125 6072.391647 5263.674527 5336.82977 5911.860937 5787.565423 5404.512309 5656.727296 6168.308407 6229.226579 1.000954781 0.974822728 0.844996479 0.856740352 0.94905216 0.929098556 0.867605671 0.908094644 0.990220588 1 12.60483733 -6.913581777 5.949879843 0.999841169 0.894333612 0.72309303 0.030161537 0.07994252 4.413540521 0.004997763 0.006591049 1.22E-07 6.913581777 -0.105507556 YGYLS(ph)LPKPMK ddPTM_HeLa_CUDC101_4h_R1 1 YGYLSLPKPMK 11 1 Q9UBT7-3;Q9UBT7-2;Q9UBT7 Q9UBT7-3 CTNNAL1 Alpha-catulin 1 0 YGYLS(1)LPKPMK 121.08 0.020039 10022000 1150.4 939.32 646.88 917.33 909.28 893.82 627.82 814.92 937.05 959.74 TRUE FALSE FALSE 1015.551856 968.2593358 681.8522895 954.7426824 842.2042259 876.7718727 652.0352277 907.6871988 898.4244024 954.0314238 1.064484702 1.014913463 0.714706322 1.00074553 0.882784576 0.919017813 0.683452569 0.951422748 0.941713637 1 9.897892976 -6.913484646 11.38378843 1.030935112 0.86107384 0.34215548 0.097220135 0.310955098 39.10499996 0.014101272 0.018536883 1.22E-07 6.913484646 -0.169861272 MQEAMTQEVSDVFSDTTT(ph)PIK ddPTM_HeLa_CUDC101_4h_R1 2 MQEAMTQEVSDVFSDTTTPIK 21 0 P18206-2;P18206 P18206-2 VCL Vinculin 1 0 MQEAMTQEVSDVFSDT(0.003)T(0.247)T(0.75)PIK;MQEAMTQEVSDVFSDT(0.001)T(0.257)T(0.741)PIK ; 169.1 3.99E-09 16935000 7670.5 5907 5147.4 5011.8 4745.1 5740.3 5202.2 5276.5 5783.5 6611.6 TRUE FALSE FALSE 6771.375618 6088.987668 5425.684014 5216.202867 4395.063427 5630.813341 5402.850597 5877.155432 5545.101682 6572.273909 1.030294189 0.926465901 0.825541371 0.793667905 0.668727976 0.856752689 0.822067168 0.894234707 0.843711288 1 12.68217689 -6.913374354 2.450835632 1.014224752 0.803463083 0.390269332 0.07718172 0.102845434 1.255297027 0.009493999 0.012749098 1.22E-07 6.913374354 -0.210761669 DDEKEAEEGEDDRDSANGEDDS(ph) ddPTM_HeLa_CUDC101_4h_R1 2 DDEKEAEEGEDDRDSANGEDDS 22 2 P07910-2;P07910;G3V4C1;P07910-3;G3V2D6;G3V2Q1;P07910-4 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 DDEKEAEEGEDDRDS(0.266)ANGEDDS(0.734);DDEKEAEEGEDDRDS(0.33)ANGEDDS(0.67) ; 68.309 0.0031723 47435000 5857.2 4474.5 3785.9 3880.8 3975.5 4588.6 4254.4 3775.5 5158.1 4546.3 TRUE FALSE FALSE 5170.627895 4612.354041 3990.577206 4039.075798 3682.235285 4501.0801 4418.493633 4205.287659 4945.480935 4519.258405 1.144131942 1.020599759 0.883015939 0.893747477 0.814787506 0.995977591 0.977703251 0.930526047 1.094312494 1 12.14187034 -6.91262248 4.907957701 1.068750353 0.917385751 0.62210986 0.057895307 0.131701415 5.544242794 0.01174031 0.015519666 1.22E-07 6.91262248 -0.151364603 LPS(ph)PTVAR ddPTM_HeLa_CUDC101_4h_R1 1 LPSPTVAR 8 0 O95425-3;O95425;A0A6I8PIX7 O95425-3 SVIL Supervillin 1 0 LPS(0.712)PT(0.288)VAR 82.029 0.03985 11968000 2429.9 2250.3 2241.3 2395.8 2746.3 2681.5 2041.7 1904.5 2482.1 2349.8 TRUE FALSE FALSE 2145.070805 2319.629076 2362.471458 2493.51108 2543.71092 2630.354855 2120.449053 2121.300582 2379.786787 2335.823285 0.918336083 0.993067023 1.011408471 1.067508444 1.088999727 1.126093259 0.907795151 0.908159703 1.018821416 1 11.18971542 -6.91208843 3.434755228 0.961244168 1.023725161 0.037892795 0.070972053 0.388572404 9.150368359 0.012559091 0.016711522 1.22E-07 6.91208843 0.062480993 AS(ph)PPAESMSVYR ddPTM_HeLa_CUDC101_4h_R1 3 ASPPAESMSVYR 12 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 AS(1)PPAESMSVYR;AS(0.999)PPAES(0.001)MSVYR;AS(1)PPAESMSVYR ;; 101.56 0.010333 87957000 2061.13 1982.61 2009.54 1913.04 2636.62 2184.17 2060.96 2036.72 2841.37 1799.29 TRUE FALSE FALSE 1819.527466 2043.691864 2118.181811 1991.06204 2442.121795 2142.510596 2140.451918 2268.571972 2724.247526 1788.587743 1.017298409 1.142628799 1.184276153 1.113203447 1.365391105 1.197878385 1.196727377 1.268359342 1.523127695 1 10.80460518 -6.912032125 1.017551461 1.002174894 1.238663905 0 0.174967263 0.164134769 0.336188296 0.01125218 0.01604825 1.22E-07 6.912032125 0.236489011 S(ph)GRSPTGNTPPVIDSVSEK ddPTM_HeLa_CUDC101_4h_R1 1 SGRSPTGNTPPVIDSVSEK 19 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.422)GRS(0.422)PT(0.152)GNT(0.004)PPVIDSVSEK 95.51 0.0012843 44881000 2074.4 2080.8 2542.9 2390.3 2299.9 2376.2 2249.3 2681.3 2451.2 2288.8 TRUE FALSE FALSE 1831.241977 2144.906982 2680.376866 2487.786766 2130.240959 2330.877944 2336.056254 2986.528354 2350.160499 2275.186116 0.804875682 0.942739131 1.178091255 1.093443191 0.936293055 1.024477922 1.026753916 1.312652329 1.032953077 1 11.15176885 -6.911860358 7.038329003 0.906138502 1.081135122 0.276984827 0.112034072 0.194302284 13.1847034 0.018921115 0.024918593 1.23E-07 6.911860358 0.17499662 RPEPSTLENITDDKYATVSS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 RPEPSTLENITDDKYATVSSPSK 23 2 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 RPEPSTLENITDDKY(0.001)AT(0.021)VS(0.154)S(0.733)PS(0.091)K;RPEPSTLENITDDKY(0.004)AT(0.239)VS(0.338)S(0.396)PS(0.023)K ; 93.029 6.96E-05 135146000 4728.6 4035.3 3975.8 3927.2 3804.3 3383.7 3613.2 3748.3 3893.9 4572.7 TRUE FALSE FALSE 4174.320676 4159.62281 4190.743774 4087.368191 3523.664368 3319.16156 3752.562334 4174.991321 3733.391794 4545.501377 0.918341087 0.91510759 0.921954131 0.899211737 0.775198174 0.73020802 0.825555208 0.918488627 0.821337732 1 12.15022372 -6.911775319 0.480072173 0.985253349 0.807247591 0.089764032 0.07389109 0.514382722 0.271320772 0.021452098 0.034438322 1.23E-07 6.911775319 -0.178005759 (ac)S(ph)ATSVDQRPK ddPTM_HeLa_CUDC101_4h_R1 1 SATSVDQRPK 10 1 A0A087X0Q1;Q7Z739;A0A087X0C3;S4R373 A0A087X0Q1 YTHDF3 YTH domain-containing family protein 3 1 0 S(0.814)AT(0.182)S(0.004)VDQRPK 80.165 0.0088559 11110000 1441.1 1435.4 1403.3 1610 1676.8 1429 1572.1 1424.7 1498.5 1428.2 TRUE FALSE FALSE 1272.176443 1479.622973 1479.166643 1675.662759 1553.105805 1401.744206 1632.736424 1586.882089 1436.731196 1419.705003 0.89608506 1.042204521 1.041883095 1.180289395 1.093963747 0.987348923 1.1500533 1.117754805 1.011992768 1 10.47137547 -6.911538351 2.431254396 0.951464296 1.098898119 0.46561614 0.059003936 0.163796391 1.967512899 0.010533609 0.014157885 1.23E-07 6.911538351 0.147433823 QNSARNSGAS(ph)DSS(ph)RFSR ddPTM_HeLa_CUDC101_4h_R1 1 QNSARNSGASDSSRFSR 17 2 C9JGB1;Q6IQ20 C9JGB1 NAPEPLD N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D 2 0 QNSARNS(0.001)GAS(0.506)DS(0.506)S(0.559)RFS(0.429)R 52.522 0.037029 8749100 7710.5 6382 5327.7 5579.2 6558.3 6359.8 5919 5839.7 7061.7 6564.1 TRUE FALSE FALSE 6806.686878 6578.621855 5615.731577 5806.743891 6074.507275 6238.497411 6147.297813 6504.467843 6770.613737 6525.056441 1.043161379 1.008209188 0.860641073 0.889914738 0.930950917 0.956083287 0.942106458 0.996844687 1.037632977 1 12.67177467 -6.911255514 9.1279363 1.020654535 0.929578202 0.616782898 0.035967678 0.16067575 15.05180391 0.006231228 0.008195363 1.23E-07 6.911255514 -0.091076333 SIDKDEEFAGSS(ph)PQSSK ddPTM_HeLa_CUDC101_4h_R1 1 SIDKDEEFAGSSPQSSK 17 1 Q9Y2M0;A0A590UJ38;H3BQ24;A0A590UJL5;Q9Y2M0-2 Q9Y2M0 FAN1 Fanconi-associated nuclease 1 1 0 SIDKDEEFAGS(0.145)S(0.846)PQS(0.008)S(0.002)K 110.33 0.00059014 19226000 1930.3 1524.9 1533.9 1334.9 1903.6 1482.8 1488.3 1438.8 1597 1588.8 TRUE FALSE FALSE 1704.03316 1571.880362 1616.827274 1389.342992 1763.175221 1454.518061 1545.70423 1602.587176 1531.170984 1579.349747 1.078946043 0.995270594 1.02372972 0.879693047 1.116393138 0.920960074 0.978696601 1.014713289 0.969494558 1 10.62511498 -6.911090219 2.681178531 1.03701057 0.985634511 0 0.065488893 0.432852328 6.326595683 0.0101865 0.013650308 1.23E-07 6.911090219 -0.051376059 GADNDGSGS(ph)ESGYTTPKK ddPTM_HeLa_CUDC101_4h_R1 2 GADNDGSGSESGYTTPKK 18 1 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 GADNDGS(0.182)GS(0.817)ES(0.001)GYTTPKK;GADNDGS(0.147)GS(0.837)ES(0.016)GYTTPKK ; 106.63 0.00034956 39815000 3045.3 2999.2 3314.6 3701.7 4048.7 2939 2890.6 3484.4 3991.1 3074.8 TRUE FALSE FALSE 2688.33455 3091.601797 3493.797302 3852.671326 3750.035467 2882.943472 3002.09141 3881.050012 3826.585169 3056.510953 0.879543568 1.011480687 1.143067163 1.260480131 1.226900713 0.943213853 0.982195535 1.269764798 1.251945512 1 11.57767002 -6.910935469 3.976243143 0.943103947 1.13093793 0 0.143459004 0.179769241 5.454480596 0.018620419 0.024706492 1.23E-07 6.910935469 0.187833983 S(ph)KSPRDPDANWDSPSR ddPTM_HeLa_CUDC101_4h_R1 2 SKSPRDPDANWDSPSR 16 2 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 S(0.869)KS(0.131)PRDPDANWDSPSR;S(0.924)KS(0.076)PRDPDANWDSPSR ; 101.45 0.0032225 54428000 2166.67 2076.8 2376.8 2456.8 2759.2 2226.95 2199.6 1939.08 2327 2211 TRUE FALSE FALSE 1912.696227 2140.783746 2505.296997 2556.998923 2555.659313 2184.474639 2284.439309 2159.817029 2231.080075 2197.848874 0.870258301 0.974035918 1.139885925 1.163409802 1.162800292 0.993914853 1.039397811 0.982695878 1.015119876 1 11.10187647 -6.909641508 5.938624482 0.937926679 1.081554132 0.3753817 0.07101332 0.15210385 8.153047953 0.012913666 0.017034268 1.23E-07 6.909641508 0.143627453 YTPTSPSYSPSS(ph)PEYTPTSPK ddPTM_HeLa_CUDC101_4h_R1 1 YTPTSPSYSPSSPEYTPTSPK 21 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YTPTSPS(0.006)YS(0.064)PS(0.078)S(0.837)PEY(0.003)T(0.01)PT(0.001)SPK 80.835 0.00088947 10129000 2778.6 2864.1 2846 2860.5 3356 3387.9 3026.6 2937 2135.9 2572.4 TRUE FALSE FALSE 2452.89672 2952.339526 2999.863369 2977.163554 3108.434566 3323.281452 3143.336976 3271.336208 2047.857298 2557.09925 0.959249712 1.154565872 1.173150932 1.164273758 1.215609666 1.299629434 1.229258886 1.279315305 0.800851706 1 11.32029244 -6.907771497 1.275968217 0.978567109 1.242904343 0.786899266 0.069432791 0.09769435 0.315032233 0.008262402 0.011515181 1.24E-07 6.907771497 0.264337234 ASSPS(ph)PLTIGTPESQR ddPTM_HeLa_CUDC101_4h_R1 1 ASSPSPLTIGTPESQR 16 0 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 1 0 ASS(0.006)PS(0.994)PLTIGTPESQR 310.17 6.88E-144 101090000 2204.6 1576.2 1353.2 1284.5 1168.2 1330.6 1266.9 1402.2 1721.1 1875.1 TRUE FALSE FALSE 1946.18013 1624.760854 1426.358085 1336.887462 1082.024213 1305.221022 1315.764757 1561.82078 1650.15553 1863.946822 1.04411784 0.871677687 0.765235396 0.717234766 0.580501654 0.700245847 0.705902519 0.837910589 0.885301828 1 10.86414499 -6.906987301 1.995823993 1.0213515 0.703360764 0.707154956 0.074064472 0.084751667 0.682487892 0.010656789 0.014452964 1.24E-07 6.906987301 -0.317990736 ENSFGS(ph)PLEFR ddPTM_HeLa_CUDC101_4h_R1 2 ENSFGSPLEFR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ENS(0.012)FGS(0.988)PLEFR;ENSFGS(1)PLEFR ; 143.46 0.001223 315790000 9697.7 7263.2 6286.1 6348.5 6431.7 6285.6 5223.8 5125.9 9047.7 9484.2 TRUE FALSE FALSE 8560.950307 7486.970583 6625.94558 6607.419271 5957.246305 6165.712653 5425.283716 5709.411736 8674.749976 9427.787557 0.908055072 0.794138661 0.702810234 0.700845159 0.631881687 0.653993592 0.575456721 0.605594017 0.920125737 1 13.20270353 -6.906440105 0.627547112 0.985617426 0.595419401 0.950402906 0.03129749 0.072992169 0.060495378 0.006941556 0.010788546 1.24E-07 6.906440105 -0.390198025 SMLRPEVGT(ph)T(ph)SQDSALLDQELYNS(ph)FHFWR ddPTM_HeLa_CUDC101_4h_R1 1 SMLRPEVGTTSQDSALLDQELYNSFHFWR 29 1 Q8TF05-2;Q8TF05 Q8TF05-2 PPP4R1 Serine/threonine-protein phosphatase 4 regulatory subunit 1 3 0 S(0.091)MLRPEVGT(0.864)T(0.864)S(0.17)QDS(0.016)ALLDQELY(0.468)NS(0.526)FHFWR 42.557 0.039953 4625000 921.48 884.76 870.9 1142.1 1150.8 909.39 797.15 1230.3 1017.3 772.36 TRUE FALSE FALSE 813.4655113 912.0184069 917.9834883 1188.679775 1065.907777 892.0449009 827.8963425 1370.352379 975.3664634 767.7659684 1.059522751 1.18788595 1.195655351 1.548231914 1.388323813 1.161870853 1.078318624 1.784856891 1.270395542 1 9.584522803 -6.906151367 1.514014082 1.024456606 1.358780074 0.230026343 0.202835537 0.280625596 1.283559405 0.032481866 0.044705439 1.24E-07 6.906151367 0.334323468 DDDDIDLFGS(ph)DDEEESEEAKR ddPTM_HeLa_CUDC101_4h_R1 4 DDDDIDLFGSDDEEESEEAKR 21 1 P24534;C9JZW3 P24534 EEF1B2 Elongation factor 1-beta 1 0 DDDDIDLFGS(1)DDEEESEEAKR;DDDDIDLFGS(1)DDEEESEEAKR;DDDDIDLFGS(1)DDEEESEEAKR;DDDDIDLFGS(0.993)DDEEES(0.007)EEAKR ;;; 118.05 9.50E-07 349412600 8964.73 7297.91 6589.61 6047.29 7161.81 7586.14 7655.48 5676.57 7863.36 7797.78 TRUE FALSE FALSE 7913.897939 7522.749957 6945.864249 6293.924625 6633.497545 7441.447019 7950.754428 6322.767783 7539.228973 7751.398458 1.020963892 0.97050229 0.896078854 0.811972789 0.855780745 0.960013481 1.02571871 0.815693815 0.972628231 1 12.9202409 -6.906092147 3.436445035 1.009529971 0.897691923 0.373167817 0.06146182 0.176753856 4.147619966 0.010217721 0.013616866 1.24E-07 6.906092147 -0.111838049 EYIPGQPPLSQS(ph)SDS(ph)SPTR ddPTM_HeLa_CUDC101_4h_R1 1 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 0 EYIPGQPPLS(0.22)QS(0.763)S(0.021)DS(0.543)S(0.415)PT(0.038)R 126.14 0.00045589 9387900 4857.8 3637 3474 3071.6 3670.3 3761.2 3404.4 2732.6 3890.8 4093 TRUE FALSE FALSE 4288.376048 3749.051659 3661.814948 3196.873125 3399.549281 3689.461377 3535.708848 3043.668138 3730.419577 4068.654654 1.054003451 0.9214475 0.900006331 0.785732237 0.835546285 0.906801312 0.869011786 0.748077288 0.916868079 1 11.99033611 -6.906048709 2.03205857 1.025294037 0.838104312 0.563924503 0.057329504 0.10946317 0.914566138 0.008173405 0.011080655 1.24E-07 6.906048709 -0.187189724 SVS(ph)CSDEDEKPR ddPTM_HeLa_CUDC101_4h_R1 1 SVSCSDEDEKPR 12 1 E9PMC9;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7;Q7Z589-2 E9PMC9 C11orf30;EMSY Protein EMSY 1 0 SVS(0.631)CS(0.368)DEDEKPR 158.86 2.41E-08 0 2210 1952.9 2289.5 2241 2130.8 2056.5 2194.1 2266 2615.2 1998.8 TRUE FALSE FALSE 1950.94715 2013.066534 2413.277295 2332.397666 1973.615129 2017.275689 2278.727172 2523.952281 2507.400349 1986.911049 0.981899593 1.013163894 1.214587486 1.173881271 0.993308246 1.015282335 1.146869244 1.270289519 1.261959035 1 10.95631157 -6.905994123 7.817731877 0.991779673 1.125787025 0 0.115962237 0.189841202 13.91040029 0.013168301 0.017331855 1.24E-07 6.905994123 0.134007352 HEDEQALLDQNSQT(ph)PPPSPFSVQAFNK ddPTM_HeLa_CUDC101_4h_R1 2 HEDEQALLDQNSQTPPPSPFSVQAFNK 27 0 A0A499FJI4;O75592-2;O75592;A0A087WY34 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 HEDEQALLDQNS(0.032)QT(0.968)PPPSPFSVQAFNK;HEDEQALLDQNS(0.096)QT(0.903)PPPSPFSVQAFNK ; 133.76 2.95E-11 33056100 2535.25 2284.84 2360.23 2430.74 2808.36 2530.49 2386.05 2027.93 2009.81 2338.71 TRUE FALSE FALSE 2238.071838 2355.233212 2487.831173 2529.876084 2601.192878 2482.225119 2478.080748 2258.781354 1926.964781 2324.799249 0.962694667 1.013091007 1.070127313 1.088212707 1.118889246 1.067715899 1.065933219 0.971602755 0.828873625 1 11.18289043 -6.904033683 3.556785799 0.982501459 1.067683041 0.426554668 0.06054219 0.138200089 3.441599797 0.006179097 0.008231693 1.25E-07 6.904033683 0.085181582 LGAGGGS(ph)PEKSPS(ph)AQELK ddPTM_HeLa_CUDC101_4h_R1 1 LGAGGGSPEKSPSAQELK 18 1 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 2 0 LGAGGGS(1)PEKS(0.002)PS(0.998)AQELK 193.8 1.75E-15 37188000 4349.5 3362.9 3594 3481.8 3328.9 3894.3 3103.3 3244 3892.5 3904.9 TRUE FALSE FALSE 3839.658203 3466.506963 3788.302511 3623.802854 3083.333679 3820.022716 3222.995321 3613.283847 3732.049502 3881.673481 0.989175989 0.893044451 0.975945692 0.933567151 0.794331026 0.984117478 0.830310776 0.930857236 0.961453744 1 11.92246305 -6.903850244 0.780034765 0.999027186 0.889266665 0.266750808 0.056896492 0.406994627 0.500381013 0.011629742 0.01739327 1.25E-07 6.903850244 -0.109760521 DPYDQSPMT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 DPYDQSPMTPR 11 0 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 1 0 DPYDQS(0.003)PMT(0.997)PR 156.6 0.00086354 3352700 1105.6 806.75 689.95 540.97 508.83 818.77 846.63 855.43 808.41 837.85 TRUE FALSE FALSE 976.003244 831.6050113 727.250784 563.0330949 471.2946246 803.1533264 879.2848027 952.8086934 775.0869976 832.8664309 1.171860466 0.998485448 0.873190174 0.676018475 0.565870597 0.964324286 1.055733273 1.144011402 0.930625811 1 9.701941335 -6.90382489 3.778547945 1.081376824 0.868410095 0.132116814 0.169376835 0.260747805 7.19713942 0.029924402 0.039807349 1.25E-07 6.90382489 -0.212966729 S(ph)LESCLLDLR ddPTM_HeLa_CUDC101_4h_R1 2 SLESCLLDLR 10 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 S(1)LESCLLDLR;S(0.999)LES(0.001)CLLDLR ; 165.35 2.39E-05 26322000 3097.3 2581.3 1965.26 2226.55 2453.69 2327.31 2611.59 1807.44 2617.1 2783.3 TRUE FALSE FALSE 2734.239189 2660.826793 2071.5079 2317.358333 2272.686177 2282.920439 2712.319901 2013.191664 2509.22203 2766.744808 0.988251313 0.961717462 0.748716649 0.837575741 0.821429635 0.825128661 0.980328903 0.727639086 0.906922107 1 11.43397387 -6.901801117 6.392396847 0.993453831 0.831609086 0.483732214 0.069021323 0.101305034 5.666081754 0.009508325 0.012536089 1.25E-07 6.901801117 -0.161844745 EMLAS(ph)DDEEDVSSK ddPTM_HeLa_CUDC101_4h_R1 5 EMLASDDEEDVSSK 14 0 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 E7ETM8 NEXN Nexilin 1 0 EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(1)DDEEDVSSK;EMLAS(0.999)DDEEDVS(0.001)SK ;;;; 247.11 7.18E-56 343381600 32294.6 24772.9 22953.1 20720.7 21232.7 23033.2 22406.8 20427.4 26618.8 29188 TRUE FALSE FALSE 28509.07594 25536.12369 24194.01402 21565.77971 19666.40602 22593.88009 23271.03778 22752.77265 25521.5618 29014.38848 0.982584071 0.880119314 0.833862621 0.743278795 0.677815631 0.778712951 0.802051637 0.784189288 0.879617429 1 14.8244809 -6.899923292 1.516583726 0.994012334 0.757706336 0.735419088 0.049597557 0.079821779 0.366731282 0.006528341 0.0090088 1.26E-07 6.899923292 -0.236305998 KTETQEK(ac)NPLPSK ddPTM_HeLa_CUDC101_4h_R1 2 KTETQEKNPLPSK 13 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 ; KTETQEK(1)NPLPSK;K(0.025)TETQEK(0.975)NPLPSK 171.76 1.14E-06 29741000 15331.3 9329.5 12413.2 11028.4 23678.5 24364.8 21203.6 17797.3 13570.3 11653.5 FALSE TRUE FALSE 13534.18825 9616.930837 13084.29514 11478.18582 21931.78423 23900.08203 22021.42995 19823.27269 13010.92649 11584.18446 1.168333282 0.830177633 1.129496442 0.99084971 1.89325233 2.063164836 1.900990961 1.711235932 1.123162924 1 13.49986886 -5.758139226 24.99936197 1.059192571 1.905006456 0.923372939 0.120118414 16.57860059 125584.3509 0.018020677 0.034884907 1.75E-06 5.758139226 0.845813885 KTETQEK(ac)NPLPSKETIEQEK ddPTM_HeLa_CUDC101_4h_R1 1 KTETQEKNPLPSKETIEQEK 20 3 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 KTETQEK(0.999)NPLPSK(0.001)ETIEQEK 104.45 0.001373 2100500 1455.2 870.29 1100.9 1118.7 1950.2 1633 2011.2 1585.2 1324.4 946.58 FALSE TRUE FALSE 1284.623662 897.1026034 1160.417984 1164.325421 1806.337631 1601.853246 2088.772658 1765.65276 1269.807671 940.9497001 1.365241587 0.953401232 1.23324125 1.237393903 1.919696272 1.702379251 2.219855809 1.876458179 1.349495803 1 9.877973793 -5.77843129 4.170120826 1.16353453 1.942927188 0.818488914 0.17066547 0.066610972 2.622112303 0.027166139 0.052871747 1.67E-06 5.77843129 0.779392659 SES(ph)PEPAATCSLPSDLTR ddPTM_HeLa_CUDC101_4h_R1 1 SESPEPAATCSLPSDLTR 18 0 Q9NS37;E9PIM0 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 1 0 S(0.007)ES(0.993)PEPAAT(0.001)CSLPSDLTR 125.45 7.75E-05 6121300 1122.1 867.59 569.06 831.91 902.73 707.58 651.93 662.02 932.27 833.05 TRUE FALSE FALSE 990.569139 894.3194196 599.8251049 865.8388856 836.1374064 694.0840904 677.0751585 737.3816808 893.841436 828.0949816 1.196202321 1.079972032 0.724343364 1.045579197 1.009711959 0.838169662 0.817629829 0.89045544 1.079394823 1 9.693652442 -6.899332501 10.92858766 1.095027655 0.895037179 0.508466752 0.096805328 0.270533375 27.44518136 0.017947732 0.023594966 1.26E-07 6.899332501 -0.199990476 SQSASVESIPEVLEECT(ph)SPADHSDSASVHDMDYVNPR ddPTM_HeLa_CUDC101_4h_R1 1 SQSASVESIPEVLEECTSPADHSDSASVHDMDYVNPR 37 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 SQSASVES(0.002)IPEVLEECT(0.363)S(0.363)PADHS(0.092)DS(0.094)AS(0.084)VHDMDY(0.002)VNPR 52.63 0.0029357 2753800 958.25 649.39 889.39 744.26 1067.4 939.92 812.82 946.13 863.15 657.32 TRUE FALSE FALSE 845.9253876 669.3969362 937.4731137 774.6141398 988.6600286 921.992592 844.1707397 1053.833615 827.5705917 653.4102314 1.294631377 1.024466566 1.434738957 1.185494353 1.513077055 1.411047069 1.291946007 1.612820804 1.266540608 1 9.351845235 -6.89873824 0.047317315 7.76E-10 2.55062187 0.36825747 0.1495169 27.63215189 0.890184755 22.53151662 24.94676029 1.26E-07 6.89873824 2.550621869 PHLKS(ph)S(ph)T(ph)MWT(ph)TLK ddPTM_HeLa_CUDC101_4h_R1 1 PHLKSSTMWTTLK 13 1 K7EIX3 K7EIX3 AFMID 4 0 PHLKS(1)S(1)T(0.996)MWT(0.529)T(0.475)LK 55.173 0.029738 31629000 1627.2 2697.7 2100.6 3399.7 4084.6 3526.1 4024.5 2213.8 3379.3 1136 TRUE FALSE FALSE 1436.462083 2780.812939 2214.16479 3538.354461 3783.287196 3458.845517 4179.726313 2465.810044 3240.003824 1129.243021 1.272057525 2.462546048 1.96075136 3.133386165 3.350286098 3.062977102 3.701352352 2.183595556 2.869182064 1 10.14114028 -6.898402815 0.964379775 1.068280332 3.153299782 0.273067605 0.721989163 0.142113993 0.262163452 0.083644458 0.121125968 1.26E-07 6.898402815 2.085019449 AS(ph)PEPPDSAEGALK ddPTM_HeLa_CUDC101_4h_R1 2 ASPEPPDSAEGALK 14 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 AS(0.988)PEPPDS(0.012)AEGALK;AS(1)PEPPDSAEGALK ; 184.51 6.25E-11 71976000 6858.9 5528.8 5383.4 5136.6 5993.9 5286.2 5309 5243.7 5927.8 5970.5 TRUE FALSE FALSE 6054.910139 5699.135775 5674.442888 5346.09275 5551.741939 5185.374542 5513.769908 5840.621612 5683.453575 5934.9872 1.020206099 0.960260837 0.956100274 0.900775784 0.935426101 0.873695994 0.929028104 0.984100119 0.957618506 1 12.5350292 -6.898016452 1.856242831 1.009512181 0.923673212 0.403289622 0.032462299 0.147581201 1.026374273 0.004829733 0.006594462 1.26E-07 6.898016452 -0.085838969 S(ph)PGMLEPLGSSR ddPTM_HeLa_CUDC101_4h_R1 4 SPGMLEPLGSSR 12 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR ;;; 169.58 1.00E-06 664030000 2465.49 1804.71 1808.24 1746 2074.26 1921.48 1583.47 1502.23 2151.88 2275.73 TRUE FALSE FALSE 2176.489 1860.310976 1905.998924 1817.209427 1921.245972 1884.83097 1644.544968 1673.237791 2063.178596 2262.193857 0.962114274 0.822348169 0.84254447 0.803295182 0.849284409 0.833187202 0.726969072 0.739652699 0.91202555 1 11.14350685 -6.896520016 0.498705434 1.004552156 0.755673003 0.684063029 0.046861414 0.244179167 0.136608622 0.014139146 0.022925274 1.27E-07 6.896520016 -0.248879153 (ac)S(ph)LSHLYR ddPTM_HeLa_CUDC101_4h_R1 2 SLSHLYR 7 0 Q9UBB9;F6XM96;F6UKU9;F6SQZ1;F6UQ07 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 S(1)LSHLYR;S(1)LSHLYR ; 79.454 0.015495 3869700 1995.9 1626.22 1325.72 1416.87 1643.3 1253.97 1368.59 1506.6 1663.5 1780.45 TRUE FALSE FALSE 1761.943628 1676.321911 1397.392433 1474.656083 1522.077033 1230.052612 1421.376975 1678.105254 1594.929826 1769.859804 0.99552723 0.947149546 0.789549788 0.833205025 0.859998645 0.695000027 0.80310145 0.948157165 0.901161675 1 10.78941937 -6.895701785 3.840421197 0.997026701 0.817259134 0.492809145 0.066877797 0.09779515 2.749269467 0.009521571 0.012682189 1.27E-07 6.895701785 -0.179767567 TEPT(ph)SPTPSAFK ddPTM_HeLa_CUDC101_4h_R1 1 TEPTSPTPSAFK 12 0 Q86XN7-2;Q86XN7 Q86XN7-2 PROSER1 Proline and serine-rich protein 1 1 0 TEPT(0.477)S(0.477)PT(0.043)PS(0.003)AFK 151.13 0.0026403 61009000 4188 3737.6 3303.9 3477.7 3369.9 3143.5 2983.6 2969 4069.8 4252.2 TRUE FALSE FALSE 3697.088989 3852.751026 3482.518828 3619.535638 3121.309191 3083.542975 3098.678451 3306.978959 3902.041121 4226.907725 0.874655713 0.91148217 0.823892797 0.856308174 0.738437977 0.729503262 0.733084007 0.782363651 0.923143199 1 12.0453869 -6.894631256 0.223680865 1.040694395 0.661313253 0.784116761 0.04065272 0.692074426 0.121339083 0.067433873 0.100632597 1.27E-07 6.894631256 -0.379381142 HNS(ph)SDGFFNNGPLR ddPTM_HeLa_CUDC101_4h_R1 2 HNSSDGFFNNGPLR 14 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 0 HNS(0.763)S(0.237)DGFFNNGPLR;HNS(0.993)S(0.007)DGFFNNGPLR ; 142.4 0.00029005 28903000 6395.2 4515.7 3467.2 4344.5 4743.3 4494.9 3708.9 3219 4551.2 3868.3 TRUE FALSE FALSE 5645.56435 4654.823365 3654.64732 4521.687489 4393.396209 4409.167272 3851.953515 3585.437948 4363.59761 3845.29118 1.468176033 1.210525588 0.950421476 1.175902494 1.142539278 1.146640674 1.001732596 0.932423003 1.134789904 1 11.90887713 -6.894520651 9.250967014 1.227238214 1.069111143 0.211372503 0.133554833 0.437229742 35.36784017 0.030633835 0.040290231 1.27E-07 6.894520651 -0.158127071 VSGS(ph)PEQAVEENLSSYSLDR ddPTM_HeLa_CUDC101_4h_R1 2 VSGSPEQAVEENLSSYSLDR 20 0 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 VS(0.245)GS(0.755)PEQAVEENLSSYSLDR;VS(0.011)GS(0.989)PEQAVEENLSSYSLDR ; 152.86 1.45E-05 18357700 3401.5 2284.87 2225.11 1871.14 2368.1 2405.2 1780.54 1516 2705.9 2760.44 TRUE FALSE FALSE 3002.781326 2355.264136 2345.406177 1947.453177 2193.409981 2359.324817 1849.216024 1688.575312 2594.361657 2744.02078 1.094299776 0.858325911 0.854733388 0.709707882 0.799341607 0.85980574 0.673907442 0.615365352 0.945459916 1 11.42207569 -6.894504441 1.741793496 1.04436321 0.742762912 0.67825063 0.08001757 0.125270029 0.765216126 0.013958985 0.01914812 1.27E-07 6.894504441 -0.301600298 GPTSS(ph)PCEEEGDEGEEDR ddPTM_HeLa_CUDC101_4h_R1 2 GPTSSPCEEEGDEGEEDR 18 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 GPTS(0.017)S(0.983)PCEEEGDEGEEDR;GPT(0.046)S(0.201)S(0.753)PCEEEGDEGEEDR ; 119.04 9.48E-05 9208300 3266.2 2382.99 2169.09 1771.75 2059.34 1945.24 2001.78 1866.87 2977.7 2953.2 TRUE FALSE FALSE 2883.340987 2456.407097 2286.357567 1844.009623 1907.426591 1908.137788 2078.989325 2079.386935 2854.957946 2935.634235 0.982186729 0.836755161 0.778829167 0.628146927 0.649749403 0.649991666 0.708190857 0.7083263 0.972518276 1 11.51945651 -6.893847746 1.509183835 0.994526144 0.66971318 0.948634393 0.031686663 0.05071445 0.230892024 0.005681838 0.007864382 1.28E-07 6.893847746 -0.324812964 RSS(ph)GREEDDEELLR ddPTM_HeLa_CUDC101_4h_R1 1 RSSGREEDDEELLR 14 2 O14639-3;O14639-5;J3QSX6;O14639-4;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639;A0A494C1P1;A0A494C1G0 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 1 0 RS(0.43)S(0.57)GREEDDEELLR 73.927 0.032019 23094000 1090.5 1194.4 1520.3 1375.5 1786.6 1346.3 1213.7 1584 1615.9 1329.7 TRUE FALSE FALSE 962.6732431 1231.198048 1602.492017 1431.598835 1654.806077 1320.621571 1260.512816 1764.316157 1549.291918 1321.790885 0.728309791 0.93146205 1.212364251 1.08307513 1.251942418 0.999115356 0.953640118 1.334792195 1.172115752 1 10.36827824 -6.893706188 5.621637682 0.869742534 1.126060797 0.170226089 0.156026198 0.151691388 7.074865449 0.02293575 0.03030046 1.28E-07 6.893706188 0.256318263 T(ph)T(ph)SRS(ph)IKK ddPTM_HeLa_CUDC101_4h_R1 1 TTSRSIKK 8 2 Q8TDX9-2;Q8TDX9 Q8TDX9-2 PKD1L1 Polycystic kidney disease protein 1-like 1 3 0 T(1)T(1)S(0.004)RS(0.996)IKK 71.349 0.040592 8387800 2399.1 1670.2 1390.6 1447.2 1561.3 1354.5 1139 1369.3 2338.7 1871.8 TRUE FALSE FALSE 2117.881135 1721.656882 1465.780042 1506.223071 1446.12601 1328.665169 1182.931612 1525.175577 2242.297796 1860.66645 1.138237933 0.925290442 0.787771522 0.809507298 0.777208623 0.714080253 0.635756941 0.819693168 1.205104653 1 10.86160374 -6.893052882 2.482846414 1.06508211 0.748626916 0.820189919 0.073894696 0.086715242 1.088228171 0.012079941 0.016327201 1.28E-07 6.893052882 -0.316455194 S(ph)SSVLSLEGSEK ddPTM_HeLa_CUDC101_4h_R1 2 SSSVLSLEGSEK 12 0 A1L390-3;A1L390;G3V311;A1L390-2;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 S(0.886)S(0.009)S(0.009)VLS(0.097)LEGSEK;S(0.472)S(0.037)S(0.472)VLS(0.018)LEGSEK ; 181.98 1.53E-10 92657000 7085.5 5836.5 4813.8 5499.2 5549.1 5262 5524.8 4366.3 6259.7 6285.2 TRUE FALSE FALSE 6254.948431 6016.315647 5074.048589 5723.481146 5139.753948 5161.636117 5737.893387 4863.341943 6001.672517 6247.815351 1.001141692 0.962947096 0.81213165 0.916077192 0.822648183 0.826150555 0.918383957 0.778406798 0.960603376 1 12.6091361 -6.892419938 4.625368369 0.999748174 0.850499815 0.700204313 0.043253184 0.070521717 2.586467626 0.006060609 0.008038398 1.28E-07 6.892419938 -0.149248358 SPSSSVGS(ph)PPVLYMQPSPL ddPTM_HeLa_CUDC101_4h_R1 1 SPSSSVGSPPVLYMQPSPL 19 0 F5H148;Q9NYV6;Q9NYV6-3;Q9NYV6-4 F5H148 RRN3 RNA polymerase I-specific transcription initiation factor RRN3 1 0 SPSS(0.001)S(0.006)VGS(0.993)PPVLYMQPSPL 109.07 0.00034741 3932500 1421 1178.3 905.91 824.05 1144.9 969.95 1180.2 1046.9 1232.6 1285.7 TRUE FALSE FALSE 1254.432534 1214.602026 954.8862348 857.6583208 1060.443008 951.4498198 1225.720709 1166.074864 1181.791706 1278.052599 0.981518707 0.950353708 0.747141577 0.671066528 0.829733462 0.744452787 0.959053415 0.912384095 0.924681587 1 10.3197315 -6.891917445 5.315676783 0.990028912 0.809403147 0.45787783 0.080831303 0.125681067 5.470111792 0.013367968 0.017679438 1.28E-07 6.891917445 -0.180625765 DSFEMEEVQS(ph)TEGEAPHVPATYQLGLTK ddPTM_HeLa_CUDC101_4h_R1 3 DSFEMEEVQSTEGEAPHVPATYQLGLTK 28 0 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 DS(0.028)FEMEEVQS(0.926)T(0.046)EGEAPHVPATYQLGLTK;DSFEMEEVQS(0.802)T(0.198)EGEAPHVPATYQLGLTK;DS(0.008)FEMEEVQS(0.768)T(0.224)EGEAPHVPATYQLGLTK ;; 86.195 6.49E-07 23220700 4757.31 4054.46 3603.46 3699.36 4231.65 3494.26 3685.09 3440.49 4696.59 4417.5 TRUE FALSE FALSE 4199.665333 4179.373107 3798.273947 3850.235891 3919.48961 3427.612812 3827.225156 3832.141475 4502.994572 4391.224514 0.956376819 0.951755733 0.864969198 0.876802331 0.892573267 0.780559683 0.871562168 0.872681746 1.02545305 1 12.10040758 -6.891392312 0.747929243 0.988436955 0.846533977 0.780034696 0.032620927 0.194919031 0.221563096 0.007060804 0.010733052 1.28E-07 6.891392312 -0.141902978 FAIQDIS(ph)VEETSAK ddPTM_HeLa_CUDC101_4h_R1 4 FAIQDISVEETSAK 14 0 O43707;G3V2E8;P12814-4;P12814-3;P12814;P12814-2;H9KV75;G3V2N5;A0A494C1A0;P35609;P35609-2;G3V2W4;G3V5M4;G3V2X9;A0A494C166;A0A087WSZ2;Q08043;A0A494C033 O43707;P12814-4 ACTN4;ACTN1;ACTN2;ACTN3 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3 1 0 FAIQDIS(1)VEETSAK;FAIQDIS(0.98)VEET(0.02)S(0.001)AK;FAIQDIS(1)VEETSAK;FAIQDIS(1)VEETSAK ;;; 209.6 1.05E-23 176926000 19100 15926 13948.3 13140.2 14059.6 15952.3 14465.7 13342.3 16375.7 17708.7 TRUE FALSE FALSE 16861.12695 16416.66118 14702.38729 13676.11415 13022.45132 15648.03646 15023.64689 14861.1335 15700.68671 17603.36786 0.957835289 0.932586384 0.835203093 0.776903275 0.739770447 0.88892288 0.853452988 0.844221039 0.891913799 1 14.10356385 -6.891010159 2.245765627 0.980406457 0.81978927 0.587725178 0.048520232 0.110170763 1.130146151 0.007406312 0.010055877 1.29E-07 6.891010159 -0.160617187 MESHS(ph)EDEDLAGAVGGLGWNSR ddPTM_HeLa_CUDC101_4h_R1 2 MESHSEDEDLAGAVGGLGWNSR 22 0 K7ESM2;K7ELS4;K7EJA3;K7ERG7;Q96MH2;K7EIM4 K7ESM2 HEXIM2 Protein HEXIM2 1 0 MES(0.084)HS(0.916)EDEDLAGAVGGLGWNSR;MES(0.254)HS(0.746)EDEDLAGAVGGLGWNSR ; 115.02 4.70E-06 4645700 3686.3 3201.7 2869.5 2823.1 3081.1 2594.1 2346.6 2998.3 3914 3605.3 TRUE FALSE FALSE 3254.197502 3300.340582 3024.63385 2938.23822 2853.813391 2544.621865 2437.109148 3339.614352 3752.663263 3583.855515 0.908015819 0.920891082 0.843960879 0.819853984 0.796296999 0.710023564 0.680024386 0.931849607 1.047102275 1 11.80729676 -6.890813377 0.54482828 0.980911582 0.757707511 0.621344385 0.069143392 0.380976199 0.246833482 0.019949441 0.032141315 1.29E-07 6.890813377 -0.223204072 RKPVLPALTINPTIAEGPS(ph)PTSEGASEANLVDLQK ddPTM_HeLa_CUDC101_4h_R1 2 RKPVLPALTINPTIAEGPSPTSEGASEANLVDLQK 35 2 P36507 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 0 RKPVLPALTINPTIAEGPS(0.734)PT(0.262)S(0.003)EGASEANLVDLQK;RKPVLPALTINPTIAEGPS(0.744)PT(0.236)S(0.017)EGAS(0.002)EANLVDLQK ; 120.33 1.05E-18 119042000 7216.1 6851.3 7259.9 7113.8 8721.6 8534.1 7303.9 6396.4 6249.2 6832.9 TRUE FALSE FALSE 6370.239697 7062.380432 7652.392154 7403.931512 8078.224944 8371.326261 7585.61387 7124.540321 5991.605331 6792.257607 0.9378678 1.039769226 1.126634559 1.09005458 1.189328411 1.232480678 1.116803029 1.048920806 0.882122805 1 12.72967546 -6.890764099 2.540061154 0.970714269 1.140422744 0.691969172 0.056958976 0.120221954 1.579124972 0.009083235 0.012276085 1.29E-07 6.890764099 0.169708475 SSQPS(ph)PTAVPASDS(ph)PPTK ddPTM_HeLa_CUDC101_4h_R1 1 SSQPSPTAVPASDSPPTK 18 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 S(0.003)S(0.004)QPS(0.979)PT(0.018)AVPAS(0.109)DS(0.886)PPT(0.001)K 110.16 0.004682 24749000 3471.2 2487.8 2705.9 2374.8 2378 2267.1 2146.3 2307.4 2558 3278.6 TRUE FALSE FALSE 3064.311198 2564.446169 2852.189139 2471.654609 2202.579678 2223.858845 2229.08351 2570.065089 2452.558157 3259.098741 0.940232697 0.786857464 0.875146587 0.758385923 0.675824776 0.682353933 0.683957034 0.788581535 0.752526496 1 11.67025735 -6.889489848 0.720087975 0.987446615 0.699480746 0.307476665 0.088074258 0.155432988 0.164741845 0.01127113 0.017282407 1.29E-07 6.889489848 -0.287965869 EGRPSGEAFVELES(ph)EDEVK ddPTM_HeLa_CUDC101_4h_R1 2 EGRPSGEAFVELESEDEVK 19 1 P31943;G8JLB6;E9PCY7;D6RDU3;D6RBM0;D6RIH9;D6RJ04;D6RIU0;D6RIT2;D6RFM3;D6R9T0;D6RAM1;E7EN40;D6RDL0;E7EQJ0 P31943;E7EQJ0 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 1 0 EGRPSGEAFVELES(1)EDEVK;EGRPSGEAFVELES(1)EDEVK ; 172.3 8.55E-08 86272000 6878.8 5593.2 5231 5013.2 5235.6 5413.8 5638.3 6024.2 5600.6 5754.2 TRUE FALSE FALSE 6072.477492 5765.519862 5513.803683 5217.659965 4849.380219 5310.540785 5855.77112 6709.970577 5369.740897 5719.973762 1.061626809 1.007962641 0.963956114 0.9121825 0.847797633 0.92842048 1.023740906 1.17307716 0.938770197 1 12.48179281 -6.889365923 4.168739392 1.029333649 0.966460872 0 0.086375351 0.402955905 12.76577454 0.014136115 0.018807301 1.29E-07 6.889365923 -0.062872777 NDAPTPGTSTT(ph)PGLR ddPTM_HeLa_CUDC101_4h_R1 2 NDAPTPGTSTTPGLR 15 0 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 NDAPTPGT(0.01)S(0.033)T(0.214)T(0.743)PGLR;NDAPTPGTS(0.001)T(0.231)T(0.768)PGLR ; 165.24 0.00012041 134973000 8821.6 7189 6403.8 6625.9 7978.4 6610.3 6337.5 6491.5 7983.2 7498.1 TRUE FALSE FALSE 7787.545421 7410.484569 6750.008798 6896.132842 7389.849327 6484.219541 6581.939498 7230.46612 7654.129117 7453.500968 1.044817121 0.994228699 0.905615875 0.925220627 0.991460169 0.869956222 0.883066833 0.970076499 1.026917304 1 12.86370251 -6.888675184 4.482214846 1.021101751 0.923183017 0.621631635 0.035716868 0.108026217 3.783530476 0.006036622 0.008016449 1.29E-07 6.888675184 -0.097918734 RQS(ph)VGDFVSGALNK ddPTM_HeLa_CUDC101_4h_R1 1 RQSVGDFVSGALNK 14 1 Q6P4F7-3;Q6P4F7;H3BR51;Q6P4F7-2 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 RQS(0.999)VGDFVS(0.001)GALNK 87.519 0.035545 10859000 1680.4 1353.8 1118.9 1346.5 1277.8 1364.3 1333.7 835.43 1532.8 1390.6 TRUE FALSE FALSE 1483.426059 1395.508973 1179.391118 1401.41609 1183.53924 1338.278251 1385.141256 930.5319743 1469.617335 1382.328649 1.073135582 1.00953487 0.853191547 1.013808178 0.856192368 0.968133194 1.002034687 0.673162619 1.063146116 1 10.43288494 -6.887698702 6.02325792 1.034826656 0.906705747 0.353482741 0.09373877 0.189261258 9.402703434 0.014216099 0.018765813 1.30E-07 6.887698702 -0.128120909 VGS(ph)PQPSSSGGEKR ddPTM_HeLa_CUDC101_4h_R1 1 VGSPQPSSSGGEKR 14 1 V9GYB6;O94761 V9GYB6 RECQL4 ATP-dependent DNA helicase Q4 1 0 VGS(0.999)PQPSSSGGEKR 64.89 0.031828 4165100 1190.7 1039.6 1419.1 1455.9 1284.9 1368.1 1344.9 989.57 1588.1 981.72 TRUE FALSE FALSE 1051.127951 1071.628844 1495.820839 1515.277895 1190.115487 1342.005772 1396.773244 1102.218649 1522.637846 975.8806858 1.077107034 1.098114615 1.532790699 1.552728645 1.219529707 1.375174026 1.4312951 1.129460461 1.5602705 1 9.93056096 -6.886650167 6.200689338 1.039100128 1.376520206 0.012468668 0.204778349 0.099315049 5.081981808 0.019553749 0.025801859 1.30E-07 6.886650167 0.337420078 EYIPGQPPLSQSSDSS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 2 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 0 EYIPGQPPLSQS(0.003)S(0.026)DS(0.349)S(0.577)PT(0.044)R;EYIPGQPPLSQS(0.001)S(0.004)DS(0.23)S(0.754)PT(0.01)R ; 194.15 8.62E-17 2126411000 9636.8 8052.5 6789.3 7685.3 7611.9 7547.8 7735.8 7274.5 8158.2 8369.4 TRUE FALSE FALSE 8507.188912 8300.58798 7156.350095 7998.739753 7050.385302 7403.83829 8034.172397 8102.599675 7821.915543 8319.618437 1.022545562 0.997712581 0.860177681 0.961431082 0.847440944 0.889925223 0.965690008 0.973914818 0.940177197 1 13.02230165 -6.886369471 7.406520563 1.010587344 0.916550879 0.347128744 0.046495033 0.127617602 7.867981371 0.006552597 0.00862951 1.30E-07 6.886369471 -0.094036465 SALSS(ph)SLR ddPTM_HeLa_CUDC101_4h_R1 1 SALSSSLR 8 0 A0A2R8Y7T6;A0A3B3IRZ4;Q6DN90;Q6DN90-3;A0A3B3IU98;A0A0C4DGT3;Q6DN90-2 A0A2R8Y7T6 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 0 SALS(0.024)S(0.488)S(0.488)LR 93.598 0.024705 33281000 7410.8 5314.1 5054 5041.9 5390.6 5372 4680.3 4595.6 5186.1 5411.4 TRUE FALSE FALSE 6542.117258 5477.821122 5327.234528 5247.530475 4992.946178 5269.53805 4860.820739 5118.744528 4972.326763 5379.212752 1.216184888 1.018331376 0.990337206 0.975520158 0.928192731 0.979611384 0.903630506 0.951578747 0.924359566 1 12.39317933 -6.886290467 2.92439756 1.102367369 0.951556019 0.109872613 0.078613758 0.191452592 3.312785511 0.013787283 0.01856655 1.30E-07 6.886290467 -0.15081135 RDVLSLLNLS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 RDVLSLLNLSPR 12 1 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 RDVLSLLNLS(1)PR 95.751 0.0019214 0 1436.9 1281.8 1045.5 1061.2 1109.5 1180.2 966.68 992.35 959.25 1392.5 TRUE FALSE FALSE 1268.46876 1321.290739 1102.022892 1104.480323 1027.654395 1157.689651 1003.965171 1105.315113 919.709309 1384.217348 0.916379759 0.954539936 0.796134288 0.797909609 0.742408262 0.836349619 0.725294458 0.798512686 0.664425504 1 10.43485478 -6.886042998 0.739582355 0.975874548 0.765019164 0 0.106443919 0.181307599 0.201819554 0.009700454 0.014832035 1.30E-07 6.886042998 -0.210855384 KVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLR ddPTM_HeLa_CUDC101_4h_R1 3 KVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLR 35 2 B1ALC0;O15511;O15511-2 B1ALC0 ARPC5 Actin-related protein 2/3 complex subunit 5 0 0 ;; ;; 121.24 1.11E-18 127758000 2829.11 2735.71 2543.05 2755.15 2646.98 2216.95 2482.84 2931.12 2777.1 2429.58 FALSE FALSE TRUE 2497.486014 2819.993982 2680.534975 2867.516926 2451.717559 2174.665372 2578.60397 3264.786853 2662.626763 2415.12875 1.034100569 1.167637122 1.109893199 1.18731431 1.015149838 0.900434551 1.067687994 1.351806546 1.102478186 1 11.23788439 -1 0.10649906 0.951720721 1.531570237 0.037157247 0.115152681 175.7346129 1.31967365 0.766322481 15.00513537 0.1 1 0.579849516 T(ph)RKSPSSDSWTCADTSTER ddPTM_HeLa_CUDC101_4h_R1 1 TRKSPSSDSWTCADTSTER 19 2 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHH7;Q8N6T3-4;H0YIQ0 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 T(0.721)RKS(0.275)PS(0.003)SDSWTCADTSTER 93.812 0.0071843 57835000 1799.6 2127.7 2314 2353.5 2836.1 2075.7 2244.3 2949.4 2418.6 2305.9 TRUE FALSE FALSE 1588.653616 2193.251915 2439.101839 2449.485903 2626.886553 2036.109481 2330.863403 3285.147774 2318.904284 2292.184404 0.693074088 0.95683921 1.064094946 1.06862515 1.146018858 0.888283454 1.016874296 1.433195239 1.01165695 1 11.1625074 -6.885675156 3.445685661 0.85397674 1.090565828 0.243710021 0.155324221 0.225783543 5.273937734 0.027582122 0.036941348 1.30E-07 6.885675156 0.236589088 KVEEAEPEEFVVEK ddPTM_HeLa_CUDC101_4h_R1 3 KVEEAEPEEFVVEK 14 1 Q13185;S4R2Y4;C9JMM0;B8ZZ43 Q13185 CBX3 Chromobox protein homolog 3 0 0 ;; ;; 173.19 3.74E-07 43839900 12168.2 10821.6 10987.3 10946.7 11781.7 10767.5 10226.9 10418.4 12210.6 12351 FALSE FALSE TRUE 10741.86204 11155.00067 11581.30667 11393.15374 10912.58746 10562.12788 10621.35496 11604.38854 11707.2739 12277.5357 0.874920041 0.908570005 0.943292445 0.92796747 0.888825553 0.860280771 0.865104791 0.945172454 0.953552422 1 13.5837334 -9.378818358 0.940000144 1.004264215 0.899172906 0.442964717 0.031993509 0.343500932 0.506913801 0.026014821 0.005706394 4.18E-10 9.378818358 -0.105091309 GLNTSQES(ph)DDDILDESSS(ph)PEGTQK ddPTM_HeLa_CUDC101_4h_R1 1 GLNTSQESDDDILDESSSPEGTQK 24 0 Q5VV41 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 2 0 GLNT(0.04)S(0.036)QES(0.884)DDDILDES(0.319)S(0.296)S(0.401)PEGT(0.023)QK 57.768 0.027178 2642000 1448.4 1254.5 952.21 756.77 1437.2 1433.8 1199.5 605.77 1277 1407 TRUE FALSE FALSE 1278.620748 1293.149658 1003.689353 787.6343516 1331.180619 1406.452654 1245.765117 674.7284082 1224.361519 1398.631101 0.914194419 0.92458237 0.717622647 0.563146602 0.951773929 1.005592291 0.890703142 0.482420566 0.875399895 1 10.44979978 -6.885558407 5.594779051 0.957465607 0.784316713 0.19097477 0.156031585 0.250295434 11.43253781 0.02553918 0.033757072 1.30E-07 6.885558407 -0.173148894 KVYEDSGIPLPAES(ph)PKKGPK ddPTM_HeLa_CUDC101_4h_R1 2 KVYEDSGIPLPAESPKKGPK 20 3 Q8IXM2-2;F8W038;F8W1H0;H0YIS7;Q8IXM2;Q8IXM2-3 Q8IXM2-2 BAP18;C17orf49;RNASEK-C17orf49 Chromatin complexes subunit BAP18 1 0 KVYEDSGIPLPAES(1)PKKGPK;KVYEDSGIPLPAES(1)PKKGPK ; 97.284 0.00067031 52563000 4115.8 4608.5 4739.5 5221.7 5790.3 5021.7 4655.1 5621.7 4521 4645.3 TRUE FALSE FALSE 3633.352163 4750.482423 4995.731706 5434.663496 5363.161105 4925.919439 4834.648766 6261.651604 4334.642466 4617.669549 0.786836764 1.028761883 1.081872935 1.176927764 1.161443245 1.066754428 1.046988901 1.356019858 0.938707809 1 12.17294922 -6.885257026 2.641055978 0.899715417 1.145422418 0.559219728 0.095287877 0.163621739 2.322490118 0.018245266 0.02466802 1.30E-07 6.885257026 0.245707002 SSDVSPPLGQHETGGS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 SSDVSPPLGQHETGGSPSK 19 0 Q96PY6-4;Q96PY6-2;Q96PY6-6;Q96PY6;Q96PY6-3 Q96PY6-4 NEK1 Serine/threonine-protein kinase Nek1 1 0 SSDVSPPLGQHET(0.014)GGS(0.887)PS(0.099)K 92.565 0.0018448 6113800 1123.6 973.29 769.41 771.15 1246 618.9 741.12 1084.4 1234.5 1067.9 TRUE FALSE FALSE 991.8933113 1003.275911 811.0066319 802.6008302 1154.085062 607.0955137 769.7052467 1207.843713 1183.613387 1061.548083 0.934383781 0.945106422 0.76398483 0.756066393 1.087171726 0.571896387 0.725078081 1.137813474 1.114988012 1 10.051954 -6.885186144 6.341872143 0.967490426 0.830592582 0.170828857 0.165004716 0.306289513 16.01960634 0.024352382 0.032125367 1.30E-07 6.885186144 -0.136897844 AAVLS(ph)DS(ph)EDEEKASAK ddPTM_HeLa_CUDC101_4h_R1 4 AAVLSDSEDEEKASAK 16 1 Q96ST2-3;Q96ST2;Q96ST2-2 Q96ST2-3 IWS1 Protein IWS1 homolog 2 0 AAVLS(1)DS(0.97)EDEEKAS(0.031)AK;AAVLS(0.931)DS(0.689)EDEEKAS(0.38)AK;AAVLS(1)DS(1)EDEEKASAK;AAVLS(0.999)DS(0.989)EDEEKAS(0.012)AK ;;; 128.73 0.00040672 55156000 10907.5 9172.7 8312.7 7783.7 8014.3 9469.8 8656.8 8611.7 9455.7 10012.8 TRUE FALSE FALSE 9628.939385 9455.300015 8762.109707 8101.15293 7423.101056 9289.179343 8990.695676 9592.021118 9065.932044 9953.24342 0.967417251 0.949971744 0.880327079 0.813920909 0.745797198 0.93328164 0.903293057 0.963708081 0.910852037 1 13.28095101 -6.884356387 2.485211881 0.984483704 0.86801771 0.279504383 0.062052308 0.199581695 2.511142638 0.010230718 0.013867958 1.31E-07 6.884356387 -0.116465994 PAAS(ph)SPETPSAGQQEAK ddPTM_HeLa_CUDC101_4h_R1 2 PAASSPETPSAGQQEAK 17 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 PAAS(0.744)S(0.256)PETPSAGQQEAK;PAAS(0.603)S(0.397)PETPSAGQQEAK ; 225.09 6.93E-33 18433600 5675.9 4335.7 4232.9 4503.8 3125.8 3331.1 3021.1 3199 4784.7 6241.7 TRUE FALSE FALSE 5010.579606 4469.277778 4461.743378 4687.484431 2895.215961 3267.564817 3137.624839 3563.161229 4587.472641 6204.574091 0.807562217 0.720319834 0.719105504 0.755488509 0.46662606 0.526638053 0.505695442 0.574279745 0.739369467 1 12.59911647 -6.884149088 0.308401756 1.023717286 0.432143212 0.595378619 0.098879004 0.378134921 0.101133676 0.053061535 0.085674114 1.31E-07 6.884149088 -0.591574074 TSPTTPEASAT(ph)NSPCTSKPATPAPSEKGEGIR ddPTM_HeLa_CUDC101_4h_R1 1 TSPTTPEASATNSPCTSKPATPAPSEKGEGIR 32 2 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 TSPTT(0.001)PEAS(0.173)AT(0.449)NS(0.346)PCT(0.014)S(0.014)KPAT(0.002)PAPSEKGEGIR 54.096 0.0056733 14246000 541.23 553.44 578.44 802.82 671 715.8 576.47 665.76 692.95 472.16 TRUE FALSE FALSE 477.7878399 570.4908304 609.7122161 835.5624697 621.5016668 702.1473076 598.704641 741.5474273 664.3863077 469.3515713 1.017974306 1.215487207 1.299052253 1.780248583 1.324170845 1.495994369 1.275599524 1.579940225 1.415540819 1 8.874525179 -6.8837419 1.953818404 1.007921033 1.47096117 0.330380235 0.187015419 0.12013194 0.929699288 0.021708191 0.02973353 1.31E-07 6.8837419 0.463040137 AEHLES(ph)PQLGGK ddPTM_HeLa_CUDC101_4h_R1 2 AEHLESPQLGGK 12 0 Q9NYD6;D6RAG4 Q9NYD6 HOXC10 Homeobox protein Hox-C10 1 0 AEHLES(1)PQLGGK;AEHLES(1)PQLGGK ; 104.09 0.00056917 39779000 17795.4 14384.1 13568.5 13655 13460.7 13597.5 13399 13597.9 15886 15955.3 TRUE FALSE FALSE 15709.45019 14827.25707 14302.05415 14211.90992 12467.73098 13338.15034 13915.80392 15145.82997 15231.17236 15860.39717 0.990482774 0.934860389 0.901746281 0.896062676 0.786091978 0.840972026 0.877393156 0.95494645 0.960327298 1 13.95314128 -6.883620039 1.404995662 0.997003248 0.865438405 0.575970247 0.041699797 0.169947309 0.669177984 0.007441642 0.01040362 1.31E-07 6.883620039 -0.131564843 DAPTSPAS(ph)VASSSSTPSSK ddPTM_HeLa_CUDC101_4h_R1 2 DAPTSPASVASSSSTPSSK 19 0 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 DAPT(0.021)S(0.063)PAS(0.68)VAS(0.211)S(0.018)S(0.005)S(0.002)T(0.001)PSSK;DAPT(0.061)S(0.383)PAS(0.531)VAS(0.025)S(0.001)SSTPSSK ; 107.99 0.000381 550160000 9359.6 8186.3 8668.4 8737 9894.9 8976.9 8389 7444.9 9535 8480.9 TRUE FALSE FALSE 8262.481876 8438.5102 9137.039924 9093.332625 9164.97294 8805.680589 8712.56654 8292.397323 9141.963264 8430.45523 0.980075411 1.000955461 1.08381335 1.078628897 1.087126696 1.044508315 1.033463354 0.983623908 1.084397345 1 13.04139482 -6.883143696 6.548895748 0.990617765 1.053354871 0.025737062 0.041298016 0.136147188 7.350518902 0.004919927 0.006487964 1.31E-07 6.883143696 0.062737105 KVESLQEEIAFLK ddPTM_HeLa_CUDC101_4h_R1 2 KVESLQEEIAFLK 13 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ; ; 160.87 5.75E-05 51382000 12071.4 10781 11006.3 9862.4 10459.3 11329.4 9959.6 10002.7 11661.5 13519.1 FALSE FALSE TRUE 10656.40879 11113.14983 11601.33387 10264.6313 9687.738277 11113.31057 10343.74511 11141.36694 11180.80803 13438.68779 0.79296498 0.826952006 0.86327877 0.763812022 0.720884243 0.826963967 0.769699041 0.829051698 0.83198659 1 13.71410465 -9.4515411 0.492084017 1.060967324 0.789419238 0.166160878 0.065065932 0.625732402 0.183241153 0.085008652 0.010282956 3.54E-10 9.4515411 -0.271548086 KVESLQEEIAFLKK ddPTM_HeLa_CUDC101_4h_R1 2 KVESLQEEIAFLKK 14 2 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ; ; 130.44 0.0003956 38069000 5469.7 4715.1 4847.3 5067.9 6224.3 5072.2 5230.1 5266 5428.8 4948.7 FALSE FALSE TRUE 4828.550058 4860.366642 5109.3597 5274.590867 5765.14579 4975.456236 5431.826709 5865.460154 5205.022566 4919.264912 0.981559266 0.988027018 1.038642926 1.072231515 1.171952699 1.011422707 1.104194795 1.192344844 1.058089503 1 12.26422703 -6.348372873 1.981038294 0.990837162 1.111564817 0.483018871 0.050775751 0.166721696 1.279437908 0.007130167 0.012041198 4.48E-07 6.348372873 0.120727655 LADCLVPYS(ph)RALY(ph)RR ddPTM_HeLa_CUDC101_4h_R1 1 LADCLVPYSRALYRR 15 2 Q6PEY1 Q6PEY1 TMEM88 Transmembrane protein 88 2 0 LADCLVPY(0.181)S(0.822)RALY(0.996)RR 63.864 0.0033696 0 719.02 514.4 539.77 395.22 473.1 650.44 419.73 417.26 510.79 612.37 TRUE FALSE FALSE 634.7375656 530.2480543 568.9515989 411.3387799 438.2003555 638.0339407 435.9191267 464.7591918 489.73502 608.727596 1.042728422 0.87107609 0.934657148 0.675735391 0.719862806 1.048143611 0.71611527 0.76349289 0.804522455 1 9.24965296 -6.882054714 1.68013115 1.01983243 0.797176558 0.146643998 0.124182724 0.221843501 1.261066609 0.017900072 0.024731919 1.31E-07 6.882054714 -0.222655872 VQS(ph)TITSRMATTMIQSK ddPTM_HeLa_CUDC101_4h_R1 1 VQSTITSRMATTMIQSK 17 1 Q5T987;Q5T985;P19823 Q5T987 ITIH2 Inter-alpha-trypsin inhibitor heavy chain H2 1 0 VQS(0.5)T(0.5)IT(0.001)SRMATTMIQSK 44.005 0.038818 134870000 2686.8 4769.6 4375.2 5592.3 9151.9 7678.5 7508.7 4194.1 7193.4 1403 TRUE FALSE FALSE 2371.857377 4916.545723 4611.736546 5820.378166 8476.78257 7532.045406 7798.313074 4671.539391 6896.885007 1394.654894 1.700676911 3.525277648 3.306722378 4.173346534 6.078050283 5.40065176 5.591571872 3.349602409 4.94522698 1 10.44569246 -6.881823763 0.897682249 1.190171573 5.140064863 0.204586797 1.412023314 0.147043602 0.236104503 0.158353489 0.234220734 1.31E-07 6.881823763 3.94989329 VVDYSQFQES(ph)DDADEDYGR ddPTM_HeLa_CUDC101_4h_R1 16 VVDYSQFQESDDADEDYGR 19 0 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDY(0.002)S(0.017)QFQES(0.98)DDADEDY(0.001)GR;VVDYS(0.002)QFQES(0.998)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(0.999)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR ;;;;;;;;;;;;;;; 246.42 2.46E-56 4833516100 48138.49 40346.53 37494.18 36627.62 38805.48 38556.09 35819.87 31713.65 44158.03 45877.68 TRUE FALSE FALSE 42495.76918 41589.55877 39521.22878 38121.45266 35942.87705 37820.69682 37201.45438 35323.80373 42337.81731 45604.79752 0.931826726 0.911955782 0.86660244 0.835908824 0.788138069 0.829313995 0.815735546 0.774563328 0.928363234 1 15.47689798 -6.879941328 0.462158908 0.993728968 0.78209411 0.862478373 0.025542555 0.145684925 0.071712539 0.007053615 0.011685413 1.32E-07 6.879941328 -0.211634859 SSSSS(ph)ASPSSPSSREEK ddPTM_HeLa_CUDC101_4h_R1 1 SSSSSASPSSPSSREEK 17 1 E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 S(0.002)S(0.002)S(0.023)S(0.032)S(0.593)AS(0.005)PS(0.083)S(0.252)PS(0.007)S(0.002)REEK 117.53 0.00023127 0 1639.8 1680.8 1852.3 1713.7 2447.8 1941.2 1932 1566.1 2017.8 1772.2 TRUE FALSE FALSE 1447.58513 1732.583456 1952.440941 1783.592093 2267.230671 1904.174844 2006.517887 1744.378494 1934.62543 1761.658876 0.821717047 0.983495431 1.108296826 1.012450321 1.286986205 1.080898732 1.138993431 0.990190847 1.098183909 1 10.78271888 -6.87978263 3.60675639 0.915206378 1.108437611 0.208230329 0.103285688 0.155103264 3.911532661 0.015788192 0.021141456 1.32E-07 6.87978263 0.193231233 LSPQDPRPLS(ph)PGALQLAGEK ddPTM_HeLa_CUDC101_4h_R1 1 LSPQDPRPLSPGALQLAGEK 20 1 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 0 LS(0.113)PQDPRPLS(0.887)PGALQLAGEK 52.318 0.028346 21260000 2067.5 1427.4 1658.6 1521.2 1614.2 1402.2 1477.6 1439.3 1582.9 1806.5 TRUE FALSE FALSE 1825.150784 1471.376502 1748.268933 1583.241111 1495.123682 1375.455371 1534.591527 1603.144094 1517.652192 1795.754858 1.016369677 0.819363788 0.973556566 0.881657708 0.832587853 0.765948295 0.854566268 0.892741059 0.845133279 1 10.8103747 -6.879470886 0.873912774 1.010424336 0.837911956 0.060345371 0.076350981 0.255954931 0.390276263 0.01189948 0.017707962 1.32E-07 6.879470886 -0.17251238 DGAGLGLS(ph)GGSPGASTPVLLTR ddPTM_HeLa_CUDC101_4h_R1 2 DGAGLGLSGGSPGASTPVLLTR 22 0 Q8N612;Q8N612-2 Q8N612 FAM160A2 FTS and Hook-interacting protein 1 0 DGAGLGLS(0.576)GGS(0.136)PGAS(0.273)T(0.016)PVLLTR;DGAGLGLS(0.995)GGS(0.005)PGASTPVLLTR ; 244.33 2.71E-58 28670000 3649.7 3457.5 3328.2 3141.5 3483.6 3479.2 2942 1232.97 3356.8 3367 TRUE FALSE FALSE 3221.887699 3564.021477 3508.132559 3269.623949 3226.621768 3412.840057 3055.473926 1373.326321 3218.431283 3346.972934 0.962627354 1.064849208 1.04815086 0.976889868 0.964041787 1.01967961 0.912906673 0.41031892 0.961594655 1 11.70864117 -4.260109744 3.257581379 0.992652459 0.327531278 0.962111635 0.034864674 0.045387098 0.761311632 0.005072902 0.075991003 5.49E-05 4.260109744 -0.665121181 down AVTIANSPSKPS(ph)EK ddPTM_HeLa_CUDC101_4h_R1 2 AVTIANSPSKPSEK 14 1 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 0 AVT(0.002)IANS(0.094)PS(0.155)KPS(0.749)EK;AVT(0.018)IANS(0.304)PS(0.257)KPS(0.421)EK ; 113.59 0.013528 377866000 7154 5637.9 5653.3 5200.8 4995.8 5196.8 5261 4875.6 5343.1 6733.2 TRUE FALSE FALSE 6315.418965 5811.597016 5958.934498 5412.911104 4627.269787 5097.679698 5463.918532 5430.618596 5122.855156 6693.150627 0.943564446 0.868290188 0.890303361 0.808723934 0.691344039 0.761626323 0.816344773 0.811369548 0.765387699 1 12.70846977 -6.879413371 0.853508911 0.982776868 0.771264275 0.169597373 0.079251998 0.16399907 0.238985386 0.009260267 0.013839275 1.32E-07 6.879413371 -0.211512592 (ac)S(ph)ASAPAAEGEGTPTQPASEKEPEMPGPR ddPTM_HeLa_CUDC101_4h_R1 1 SASAPAAEGEGTPTQPASEKEPEMPGPR 28 1 D6R9L5;H0Y8X0;A0A494C198;B4DFG0;H0Y993;P35659;P35659-2 D6R9L5 DEK Protein DEK 1 0 S(0.492)AS(0.492)APAAEGEGT(0.016)PTQPASEKEPEMPGPR 76.351 3.21E-14 38840000 1745.2 1257.1 1112.7 1128.7 1130.4 1300.8 1090.7 1083.6 1792 1228.2 TRUE FALSE FALSE 1540.630302 1295.829761 1172.855928 1174.733265 1047.012644 1275.989407 1132.768664 1206.952644 1718.133002 1220.894612 1.261886396 1.061377246 0.960652882 0.962190555 0.857578233 1.045126578 0.927818547 0.988580531 1.407273801 1 10.25372296 -6.879311826 3.964782313 1.125193697 0.955272903 0.456284479 0.115778491 0.183599055 5.380722081 0.017082817 0.02280229 1.32E-07 6.879311826 -0.169920794 ESEDKPEIEDVGS(ph)DEEEEKK ddPTM_HeLa_CUDC101_4h_R1 2 ESEDKPEIEDVGSDEEEEKK 20 2 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 ESEDKPEIEDVGS(1)DEEEEKK;ESEDKPEIEDVGS(1)DEEEEKK ; 144.63 1.95E-05 606660000 11902.4 7120.9 7525 7525.6 6359.5 7337.3 6316.9 5388.6 9050.5 9389.8 TRUE FALSE FALSE 10507.21871 7340.286489 7931.824262 7832.526496 5890.372355 7197.353227 6560.544949 6002.016443 8677.434559 9333.949052 1.125699172 0.786407387 0.849782254 0.839143909 0.631069692 0.77109412 0.702869162 0.64303077 0.929663802 1 13.18827188 -6.878455166 1.338898405 1.058928373 0.715348496 0.646878257 0.088692046 0.142429257 0.508499334 0.015906339 0.022383672 1.32E-07 6.878455166 -0.343579877 YGS(ph)QEHPIGDK ddPTM_HeLa_CUDC101_4h_R1 2 YGSQEHPIGDK 11 0 Q14644-2;Q14644 Q14644-2 RASA3 Ras GTPase-activating protein 3 1 0 Y(0.001)GS(0.999)QEHPIGDK;YGS(1)QEHPIGDK ; 136.6 0.0015956 22618000 5278.7 4850.6 5190.4 5010.1 5612.4 5719.8 6023.2 4382.7 4963.8 4908.9 TRUE FALSE FALSE 4659.938788 5000.041237 5471.008724 5214.433533 5198.384433 5610.704345 6255.516842 4881.608853 4759.190063 4879.701644 0.954963874 1.02466126 1.121176892 1.068596794 1.065307843 1.149804794 1.281946581 1.000390845 0.975303494 1 12.25257723 -6.878218134 3.027732698 0.978818965 1.120404472 0.448556731 0.069502969 0.164589073 3.041092577 0.011314212 0.015253206 1.32E-07 6.878218134 0.141585507 EDFDSTSSSSST(ph)PPLQPR ddPTM_HeLa_CUDC101_4h_R1 2 EDFDSTSSSSSTPPLQPR 18 0 A0A669KAX4;Q13620-1;Q13620;A0A669KAU9;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 1 0 EDFDSTSS(0.001)S(0.001)S(0.008)S(0.058)T(0.933)PPLQPR;EDFDSTSSSSS(0.023)T(0.976)PPLQPR ; 313.76 3.38E-144 47263000 5670.5 4119.3 3599 3427.9 3532.4 4038.5 3445.4 2941.3 5180 4617.6 TRUE FALSE FALSE 5005.812586 4246.21075 3793.572826 3567.704579 3271.82189 3961.472341 3578.290232 3276.125703 4966.478208 4590.13431 1.090559066 0.925073312 0.826462271 0.777254942 0.712794369 0.863040616 0.779561118 0.713731992 1.081989735 1 12.16432065 -6.874252386 2.275897795 1.042524148 0.774469228 0.87349506 0.047835431 0.078101437 0.824599718 0.008807808 0.012023712 1.34E-07 6.874252386 -0.268054921 SPSFGDPQLS(ph)PEAR ddPTM_HeLa_CUDC101_4h_R1 2 SPSFGDPQLSPEAR 14 0 O95425-3;O95425;A0A6I8PIX7;O95425-2;O95425-4 O95425-3 SVIL Supervillin 1 0 SPSFGDPQLS(1)PEAR;SPSFGDPQLS(1)PEAR ; 144.41 0.00039359 38316000 4195.8 3489.6 3251 3052.8 2883.1 3010 2870.6 2937.1 3225.3 4099.6 TRUE FALSE FALSE 3703.974684 3597.11044 3426.758894 3177.306379 2670.419457 2952.589265 2981.320004 3271.447592 3092.351769 4075.215397 0.9089028 0.882679831 0.840877981 0.779665875 0.655283021 0.724523486 0.731573601 0.802766792 0.75881922 1 11.9926606 -6.874165118 0.724513182 0.974001319 0.723288415 0.327562763 0.079114802 0.17006064 0.182157228 0.010690324 0.016548844 1.34E-07 6.874165118 -0.250712904 S(ph)LSDS(ph)ESDDSKSK ddPTM_HeLa_CUDC101_4h_R1 1 SLSDSESDDSKSK 13 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 S(1)LS(0.017)DS(0.962)ES(0.017)DDS(0.002)KS(0.001)K 170.56 5.87E-06 7604200 7108.4 6310.2 7497.6 6802.4 9052.9 7090.8 6630.8 6204.8 9091.2 6537.7 TRUE FALSE FALSE 6275.164128 6504.609783 7902.942935 7079.831274 8385.085603 6955.554804 6886.552177 6911.129351 8716.456888 6498.81347 0.965586127 1.000891903 1.216059358 1.089403675 1.290248696 1.070280727 1.059663 1.063444794 1.341238201 1 12.66596062 -6.873792028 7.509990962 0.983804096 1.130511374 0 0.132697364 0.139578392 8.75087021 0.011106723 0.014627635 1.34E-07 6.873792028 0.146707277 EAPS(ph)PTLR ddPTM_HeLa_CUDC101_4h_R1 2 EAPSPTLR 8 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 EAPS(0.962)PT(0.038)LR;EAPS(0.987)PT(0.013)LR ; 142.36 0.0043407 180571000 9064.2 7314 7301.5 7542.7 7461.7 7976.3 6546.8 6682.7 7833.5 8420.7 TRUE FALSE FALSE 8001.708216 7539.335671 7696.241176 7850.323908 6911.265257 7824.165367 6799.312269 7443.431556 7510.599814 8370.613302 0.955928548 0.900690953 0.919435757 0.937843337 0.82565817 0.934718292 0.812283643 0.889233714 0.897258008 1 13.03111762 -6.873704535 0.340355523 1.0058421 0.843969859 0.187352522 0.048507416 0.596927771 0.183062142 0.022340898 0.036942062 1.34E-07 6.873704535 -0.161872241 KMS(ph)QPGS(ph)PSPK ddPTM_HeLa_CUDC101_4h_R1 1 KMSQPGSPSPK 11 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8Y8C1;A0A2R8YFD8;A0A2R8Y445;A0A2R8YER1;A0A2R8YE38;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8YD40;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 0 KMS(1)QPGS(0.925)PS(0.075)PK 98.253 0.0012213 0 5492.6 3858 4410.9 4418.4 3131.9 4523.5 3697.1 3705.1 5152.9 4985.4 TRUE FALSE FALSE 4848.765754 3976.860407 4649.366596 4598.60145 2900.865977 4437.221774 3839.698385 4126.873607 4940.495281 4955.746619 0.978412765 0.802474524 0.938176818 0.927933126 0.585353974 0.895368976 0.774797156 0.832745079 0.996922494 1 12.27488671 -6.87328018 0.76255807 0.997598842 0.79026385 0.40718538 0.094091362 0.388910203 0.458018964 0.020578263 0.031548174 1.34E-07 6.87328018 -0.207334992 T(ph)IASDS(ph)EEEAGK ddPTM_HeLa_CUDC101_4h_R1 2 TIASDSEEEAGK 12 0 Q96ST2-3;Q96ST2;Q96ST2-2 Q96ST2-3 IWS1 Protein IWS1 homolog 2 0 T(1)IAS(0.002)DS(0.999)EEEAGK;T(0.997)IAS(0.004)DS(0.999)EEEAGK ; 144.51 0.0038882 32960800 11994.4 9311.2 8549.8 8974.6 7919.6 8561.1 8017.8 8057.2 10372.3 10995 TRUE FALSE FALSE 10588.43461 9598.067036 9012.02805 9340.62298 7335.386886 8397.811281 8327.049232 8974.39908 9944.749404 10929.60125 0.968785079 0.878171748 0.824552318 0.854616995 0.671148628 0.768354772 0.761880424 0.821109469 0.909891329 1 13.41595315 -6.873007605 1.020287843 0.99139206 0.762646006 0.715619589 0.050235578 0.126983154 0.26209922 0.008337031 0.012145066 1.34E-07 6.873007605 -0.228746054 RQS(ph)SPSCGPVAETSSIGNGDGISK ddPTM_HeLa_CUDC101_4h_R1 1 RQSSPSCGPVAETSSIGNGDGISK 24 1 Q9Y4K4 Q9Y4K4 MAP4K5 Mitogen-activated protein kinase kinase kinase kinase 5 1 0 RQS(0.398)S(0.398)PS(0.189)CGPVAET(0.011)S(0.004)S(0.002)IGNGDGISK 53.091 0.012699 10325000 1260 1176.1 1451.5 1732.5 1526.7 1260.5 1248.9 1130.2 1608.3 1229.9 TRUE FALSE FALSE 1112.30471 1212.334247 1529.972481 1803.158839 1414.078383 1236.458063 1297.070491 1258.8574 1542.005193 1222.5845 0.909797818 0.991615914 1.251424732 1.474874611 1.156630386 1.011347733 1.060925025 1.029669033 1.261266762 1 10.25571847 -6.871933227 6.253190492 0.957232611 1.165757704 0.036681178 0.159096078 0.186082059 9.653200649 0.022641654 0.029887322 1.34E-07 6.871933227 0.208525094 DHS(ph)PTPSVFNSDEERYR ddPTM_HeLa_CUDC101_4h_R1 4 DHSPTPSVFNSDEERYR 17 1 Q6UN15;Q6UN15-5;Q6UN15-3 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 DHS(0.929)PT(0.042)PS(0.029)VFNSDEERYR;DHS(0.806)PT(0.193)PS(0.001)VFNSDEERYR;DHS(0.884)PT(0.116)PSVFNSDEERYR;DHS(0.557)PT(0.355)PS(0.076)VFNS(0.011)DEERY(0.001)R ;;; 87.519 0.0038125 88991000 2770.73 2961.99 4382.23 3614.68 5266.55 3938.71 3780.02 3603.33 4353.35 3131.9 TRUE FALSE FALSE 2445.94923 3053.245401 4619.146609 3762.102274 4878.047099 3863.585669 3925.816638 4013.518522 4173.90307 3113.27132 0.785652447 0.980719342 1.483695488 1.208408098 1.56685576 1.241005127 1.260994059 1.28916439 1.340680796 1 11.6042156 -6.871692751 5.700018354 0.898308335 1.336546525 0.350323572 0.181235153 0.077708888 3.642444581 0.020091714 0.026566719 1.34E-07 6.871692751 0.438238191 SDGSGESAQPPEDS(ph)SPPASSESSSTR ddPTM_HeLa_CUDC101_4h_R1 1 SDGSGESAQPPEDSSPPASSESSSTR 26 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 SDGSGESAQPPEDS(0.892)S(0.108)PPASSESSSTR 151.53 3.55E-11 4894500 2836.6 2201 1969.5 2140.4 1998.9 2419.3 1900.5 1937.4 2466.1 2175 TRUE FALSE FALSE 2504.098048 2268.810201 2075.977127 2227.694764 1851.445129 2373.155883 1973.802922 2157.945785 2364.446314 2162.063003 1.158198463 1.049372843 0.960183456 1.030356081 0.856332645 1.097634935 0.912925719 0.998095699 1.093606574 1 11.07819285 -6.870378669 4.904436272 1.076005399 0.975818189 0.327839154 0.070543783 0.219645348 8.64467564 0.012834238 0.017035794 1.35E-07 6.870378669 -0.10018721 IQQHVGEEAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 IQQHVGEEASPR 12 0 Q8TER5;Q8TER5-3;Q8TER5-2;Q8TER5-4 Q8TER5;Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 IQQHVGEEAS(1)PR;IQQHVGEEAS(1)PR;IQQHVGEEAS(1)PR;IQQHVGEEAS(1)PR ;;; 175.88 4.38E-07 33295100 3937.21 3200.22 2951.83 2883.55 3458.44 2910.88 3012.3 3066.36 3605.47 3331.43 TRUE FALSE FALSE 3475.696212 3298.814985 3111.414859 3001.153633 3203.317771 2855.359814 3128.48542 3415.422028 3456.851001 3311.614506 1.049547345 0.99613496 0.93954621 0.906250902 0.967297904 0.862225905 0.944700965 1.031346499 1.043856703 1 11.69331903 -6.869257584 3.617439721 1.023389267 0.937726853 0.471237689 0.042534634 0.15590096 3.956150336 0.007044961 0.009455112 1.35E-07 6.869257584 -0.085662414 EVESRLS(ph)PGESAYQK ddPTM_HeLa_CUDC101_4h_R1 2 EVESRLSPGESAYQK 15 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 0 EVES(0.004)RLS(0.994)PGES(0.002)AYQK;EVES(0.246)RLS(0.75)PGES(0.004)AYQK ; 74.812 0.01701 57769000 3065.4 2895.7 3116.4 3381.9 4209.2 3092.6 3188.1 3415 3533.2 2643.8 TRUE FALSE FALSE 2706.078459 2984.913085 3284.882011 3519.8285 3898.695702 3033.613808 3311.066085 3803.749796 3387.560001 2628.07456 1.029681007 1.135779452 1.249919641 1.339318356 1.483479868 1.154310404 1.259882857 1.447352314 1.288989305 1 11.35979049 -6.869166748 1.68142758 1.011898107 1.329986877 0.357070236 0.122934068 0.130049825 0.741831744 0.014965965 0.020789247 1.35E-07 6.869166748 0.31808877 SFLDSGY(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SFLDSGYR 8 0 P18206-2;P18206 P18206-2 VCL Vinculin 1 0 SFLDSGY(1)R 127.46 0.03545 7521300 2621.5 1844.1 1454.7 1614.6 1088.8 1532 1456.5 1841.1 1645.1 1895.5 TRUE FALSE FALSE 2314.211744 1900.914535 1533.345482 1680.450367 1008.481393 1502.779652 1512.677693 2050.683382 1577.288282 1884.225482 1.228203188 1.008857249 0.813780249 0.891852054 0.535223307 0.79755829 0.802811398 1.088342877 0.837101662 1 10.8797559 -6.868836511 3.501385529 1.108317105 0.808573475 0.208760882 0.161465519 0.157279992 3.777519484 0.024511937 0.032943622 1.35E-07 6.868836511 -0.29974363 TRDDGDEEGLLTHS(ph)EEELEHSQDT(ph)DADDGALQ ddPTM_HeLa_CUDC101_4h_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9-2;Q9UKM9 Q9UKM9-2 RALY RNA-binding protein Raly 2 0 TRDDGDEEGLLT(0.011)HS(0.98)EEELEHS(0.16)QDT(0.848)DADDGALQ 82.089 5.91E-08 84886000 2016.3 1670 1343 1549.6 1621 1584 1553.1 1213.8 1830.7 1744.7 TRUE FALSE FALSE 1779.952371 1721.450721 1415.606642 1612.799386 1501.422059 1553.787839 1613.003587 1351.974086 1755.237771 1734.322447 1.026309942 0.992578239 0.816230364 0.929930526 0.865711023 0.89590482 0.930048268 0.779540211 1.012059652 1 10.76015644 -6.867292283 6.497037312 1.012165544 0.876370963 0.699075319 0.044374723 0.083785166 4.595071649 0.006582729 0.008685471 1.36E-07 6.867292283 -0.135794581 SRLS(ph)SNKDHQGRACSSPPCVY(ph)S(ph)VK ddPTM_HeLa_CUDC101_4h_R1 1 SRLSSNKDHQGRACSSPPCVYSVK 24 3 Q8NGC5 Q8NGC5 OR6J1 Olfactory receptor 6J1 3 0 S(0.007)RLS(0.493)S(0.493)NKDHQGRACS(0.117)S(0.117)PPCVY(0.883)S(0.888)VK 40.012 0.0031412 0 258.02 451.16 317.64 422.75 480.75 630.22 524.45 345.97 674.15 211.67 TRUE FALSE FALSE 227.7752867 465.0597048 334.8125792 439.9915723 445.2860303 618.1996035 544.6782122 385.3538263 646.3612517 210.4109774 1.082525681 2.210244496 1.591231519 2.091105596 2.116268057 2.938057753 2.588639713 1.831434039 3.071898907 1 7.717066164 -6.86721594 0.774918411 0.989013055 2.425509867 0 0.747027257 0.215012759 0.260913192 0.079103706 0.121377249 1.36E-07 6.86721594 1.436496812 VFSGLVS(ph)TGLK ddPTM_HeLa_CUDC101_4h_R1 2 VFSGLVSTGLK 11 0 P13639 P13639 EEF2 Elongation factor 2 1 0 VFSGLVS(0.5)T(0.5)GLK;VFSGLVS(0.914)T(0.086)GLK ; 160.86 0.00011421 44251000 6039.5 4950.8 4134.5 4305.6 4633.6 3985.1 4300.6 3982.9 4563 5516.6 TRUE FALSE FALSE 5331.558965 5103.32828 4358.023576 4481.200978 4291.788559 3909.090857 4466.475583 4436.297237 4374.911209 5483.787018 0.972240342 0.930621168 0.794710583 0.817172688 0.782632248 0.712845128 0.814487428 0.808984233 0.797790139 1 12.42095682 -6.867150096 1.879496151 0.988246736 0.782610992 0.414781949 0.066965187 0.065852314 0.471951909 0.005173203 0.007145802 1.36E-07 6.867150096 -0.205635744 LS(ph)PLPVVSR ddPTM_HeLa_CUDC101_4h_R1 2 LSPLPVVSR 9 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 LS(1)PLPVVSR;LS(1)PLPVVSR ; 104.43 0.013586 11763100 8322.1 5779.3 5250.2 5539.1 4850.6 5149.2 4834.2 4607.7 6162.2 6878.8 TRUE FALSE FALSE 7346.596053 5957.353383 5534.041693 5765.00844 4492.780902 5050.987589 5020.656713 5132.221943 5908.191508 6837.884592 1.074396029 0.871227542 0.809320722 0.843098236 0.657042517 0.738676929 0.734241218 0.75055697 0.864037909 1 12.73933436 -6.866411868 1.544922937 1.035821127 0.739306443 0.635000226 0.072910067 0.092112126 0.441749345 0.009479399 0.013258852 1.36E-07 6.866411868 -0.296514684 KASSPS(ph)PLT(ph)IGTPESQR ddPTM_HeLa_CUDC101_4h_R1 2 KASSPSPLTIGTPESQR 17 1 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 2 0 KASS(0.001)PS(0.998)PLT(0.993)IGT(0.007)PES(0.001)QR;KAS(0.008)S(0.234)PS(0.758)PLT(0.91)IGT(0.088)PES(0.002)QR ; 174.68 6.46E-07 24543000 5669.4 4533.6 4454.1 4049 4536.1 4323.5 4350.3 4883.4 4896.3 4855.3 TRUE FALSE FALSE 5004.841526 4673.274842 4694.902119 4214.135721 4201.48094 4241.036441 4518.092528 5439.306517 4694.472442 4826.42046 1.036967576 0.968269317 0.972750335 0.873138956 0.870516975 0.878712594 0.936116645 1.126985633 0.972661309 1 12.23673789 -6.863725163 2.191727393 1.017014303 0.931260853 0.104509819 0.072315862 0.342927193 3.359579867 0.012126808 0.016644964 1.37E-07 6.863725163 -0.085753451 GSSPSIRPIQGSQGS(ph)SSPVEKEVVEATDSR ddPTM_HeLa_CUDC101_4h_R1 1 GSSPSIRPIQGSQGSSSPVEKEVVEATDSR 30 2 Q92560;F8W6N3;H0Y8E8 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1;Ubiquitin carboxyl-terminal hydrolase 1 0 GSS(0.001)PS(0.001)IRPIQGS(0.146)QGS(0.557)S(0.146)S(0.146)PVEKEVVEAT(0.003)DS(0.001)R 46.862 0.013528 15516000 1327.9 1321.9 1522 1508.3 1866.9 1445.2 1518.7 1289.3 1734 1435.1 TRUE FALSE FALSE 1172.245575 1362.626172 1604.283924 1569.814993 1729.182506 1417.635218 1577.276768 1436.0687 1662.523786 1426.563961 0.821726615 0.955180566 1.124579036 1.100416831 1.212131074 0.993741084 1.105647423 1.00666268 1.165404308 1 10.47832872 -6.862009433 5.009268508 0.914661339 1.092489654 0.063440964 0.105759261 0.132098949 5.42867754 0.013792471 0.018311783 1.37E-07 6.862009433 0.177828315 MALPPQEDATAS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 9 MALPPQEDATASPPR 15 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MALPPQEDAT(0.338)AS(0.662)PPR;MALPPQEDAT(0.097)AS(0.903)PPR;MALPPQEDAT(0.458)AS(0.542)PPR;MALPPQEDATAS(1)PPR;MALPPQEDATAS(1)PPR;MALPPQEDAT(0.001)AS(0.999)PPR;MALPPQEDAT(0.073)AS(0.927)PPR;MALPPQEDAT(0.032)AS(0.968)PPR;MALPPQEDAT(0.001)AS(0.999)PPR ;;;;;;;; 219.03 2.26E-32 1137894000 63802.5 54643.9 49520.2 49914 53488 54172.1 48673.8 51518.9 58110.8 58768 TRUE FALSE FALSE 56323.66767 56327.41379 52197.4118 51949.70867 49542.2968 53138.85745 50551.16477 57383.60333 55715.44823 58418.44532 0.964141845 0.964205971 0.893509088 0.889268935 0.848059145 0.909624643 0.865328827 0.982285698 0.953730417 1 15.83413634 -6.861417991 2.606398278 0.982965164 0.893610639 0.489244423 0.035551587 0.139274389 1.929283707 0.005601372 0.00763596 1.38E-07 6.861417991 -0.089354524 RGS(ph)LEMSSDGEPLSR ddPTM_HeLa_CUDC101_4h_R1 3 RGSLEMSSDGEPLSR 15 1 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 RGS(0.884)LEMS(0.025)S(0.091)DGEPLSR;RGS(0.408)LEMS(0.171)S(0.171)DGEPLS(0.25)R;RGS(0.975)LEMS(0.012)S(0.012)DGEPLSR ;; 157.37 0.00017792 45807000 7445.3 7172.4 8177.1 7746 9421.5 8448.4 8289.1 8548.7 7364.8 7239.1 TRUE FALSE FALSE 6572.57322 7393.373143 8619.17876 8061.915361 8726.494715 8287.260846 8608.813364 9521.849453 7061.219827 7196.041511 0.913359548 1.027422248 1.197766681 1.120326411 1.212679874 1.151641612 1.196326251 1.323206577 0.981264465 1 12.81298779 -6.861041704 3.3049289 0.959216234 1.196204671 0.803695705 0.053736345 0.078646077 1.710438844 0.009436757 0.012738221 1.38E-07 6.861041704 0.236988436 KYDEELEER ddPTM_HeLa_CUDC101_4h_R1 1 KYDEELEER 9 1 Q01995;E9PJ32 Q01995 TAGLN Transgelin 0 0 88.134 0.032733 44277000 8200.1 7624.4 6709.2 6643.8 6698 7445.2 6946 7317.9 7469.3 4473 FALSE FALSE TRUE 7238.896709 7859.298727 7071.919646 6914.762881 6203.901884 7303.195215 7213.909547 8150.940156 7161.412293 4446.394397 1.628037475 1.767566712 1.590484112 1.555139347 1.395265766 1.642498295 1.622417829 1.833157257 1.610611127 1 12.11842021 -9.128090287 0.722026813 0.963765963 1.626473875 0.00583332 0.217783055 0.267753088 0.233601516 0.104783706 0.025130373 7.45E-10 9.128090287 0.662707911 S(ph)PS(ph)PAPAPAPAAAAGPPTR ddPTM_HeLa_CUDC101_4h_R1 4 SPSPAPAPAPAAAAGPPTR 19 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 S(1)PS(1)PAPAPAPAAAAGPPTR;S(1)PS(1)PAPAPAPAAAAGPPTR;S(1)PS(1)PAPAPAPAAAAGPPTR;S(1)PS(1)PAPAPAPAAAAGPPTR ;;; 169.72 1.91E-06 125235000 5586.1 4651.88 3994.49 4079.08 3975.55 4431.88 4055.05 4236.95 5260.4 5074.1 TRUE FALSE FALSE 4931.305826 4795.198909 4210.444212 4245.442514 3682.281597 4347.349273 4211.454637 4719.267262 5043.564085 5043.919028 0.977673472 0.950689114 0.834756504 0.841695216 0.730043757 0.861899101 0.834956829 0.935635016 0.99992963 1 12.3003294 -6.860395723 2.898219882 0.989070458 0.834552679 0.687347684 0.047437436 0.105450881 1.795948277 0.007736297 0.01050275 1.38E-07 6.860395723 -0.154517779 SSS(ph)PCRTPEPDNDAHLR ddPTM_HeLa_CUDC101_4h_R1 2 SSSPCRTPEPDNDAHLR 17 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 0 S(0.092)S(0.092)S(0.482)PCRT(0.335)PEPDNDAHLR;S(0.096)S(0.096)S(0.801)PCRT(0.007)PEPDNDAHLR ; 119.54 0.00014448 17011300 3180.5 2833.88 3507.4 3618.4 3736.9 3546.4 3706.1 3437.4 3668 2594.16 TRUE FALSE FALSE 2807.686611 2921.188484 3697.020653 3765.973992 3461.236332 3478.758329 3849.045518 3828.699722 3516.803487 2578.729821 1.088786653 1.132801296 1.433659557 1.460398822 1.342225271 1.349020088 1.492612947 1.484723095 1.363773536 1 11.33244491 -6.860095341 3.081945235 1.043414701 1.426304976 0.541026084 0.114058511 0.054198779 1.037058658 0.010157872 0.013755841 1.38E-07 6.860095341 0.382890275 HSS(ph)YPAGTEDDEGMGEEPSPFR ddPTM_HeLa_CUDC101_4h_R1 4 HSSYPAGTEDDEGMGEEPSPFR 22 0 Q92934 Q92934 BAD Bcl2-associated agonist of cell death 1 0 HS(0.205)S(0.793)Y(0.002)PAGTEDDEGMGEEPSPFR;HS(0.203)S(0.797)YPAGTEDDEGMGEEPSPFR;HS(0.202)S(0.797)YPAGTEDDEGMGEEPSPFR;HS(0.162)S(0.838)YPAGTEDDEGMGEEPSPFR ;;; 227.6 7.24E-36 123145300 7616.6 6688.3 7090.8 6673.2 8735.1 7699.7 7319.2 5625.2 7486.8 6861.5 TRUE FALSE FALSE 6723.793694 6894.358595 7474.150096 6945.36194 8090.729076 7552.841051 7601.503996 6265.55003 7178.190935 6820.687493 0.98579413 1.010801126 1.095805973 1.018278868 1.186204336 1.107343073 1.114477683 0.91860975 1.052414576 1 12.73570145 -6.858619321 4.720932675 0.993551173 1.079416244 0.139294442 0.068501849 0.204030174 7.820683371 0.010180153 0.013548086 1.38E-07 6.858619321 0.085865071 IMPES(ph)SESPPTEREPGGVVDGLIGK ddPTM_HeLa_CUDC101_4h_R1 1 IMPESSESPPTEREPGGVVDGLIGK 25 1 Q5JZB7;A0A087X074;Q5JZB8;Q9BPZ2;Q99865 Q5JZB7 SPIN2B;SPIN2A Spindlin-2B;Spindlin-2A 1 0 IMPES(0.327)S(0.327)ES(0.327)PPT(0.02)EREPGGVVDGLIGK 43.841 0.037004 9334800 1947.7 1737.8 1663.6 1798.7 2180.2 2052.9 1688.7 1852.4 1732.7 1608.9 TRUE FALSE FALSE 1719.393559 1791.339558 1753.539248 1872.058761 2019.37099 2013.744353 1753.833725 2063.269728 1661.277373 1599.330191 1.075071032 1.120056113 1.096421025 1.170526744 1.262635446 1.259117325 1.09660515 1.290083649 1.038733203 1 10.64325211 -6.856542883 0.501314688 1.011062922 1.234796712 0.676754566 0.054214312 0.355976803 0.199205853 0.018070012 0.030327658 1.39E-07 6.856542883 0.22373379 VLNTGS(ph)DVEEAVADALK ddPTM_HeLa_CUDC101_4h_R1 3 VLNTGSDVEEAVADALK 17 0 E3W994;J3KR49;O75122 E3W994 CLASP2 CLIP-associating protein 2 1 0 VLNT(0.058)GS(0.942)DVEEAVADALK;VLNT(0.279)GS(0.721)DVEEAVADALK;VLNT(0.003)GS(0.997)DVEEAVADALK ;; 188.9 3.27E-11 166392000 3420.1 2471.34 2613.6 2421.05 2523.32 2414.18 2254.12 2116.19 2646.33 3150.51 TRUE FALSE FALSE 3019.201063 2547.479056 2754.899122 2519.790884 2337.179711 2368.133539 2341.062163 2357.088516 2537.247157 3131.770626 0.964055617 0.813430918 0.879661843 0.804589858 0.746280616 0.756164426 0.747520314 0.75263766 0.810163789 1 11.61276284 -6.856477822 0.694896063 0.995817631 0.74309871 0.434898086 0.065463071 0.113002161 0.112010296 0.007007241 0.01108069 1.39E-07 6.856477822 -0.25271892 KYFLHDDRDDGVDYWAK ddPTM_HeLa_CUDC101_4h_R1 1 KYFLHDDRDDGVDYWAK 17 2 Q9NYF8-2;Q9NYF8;Q9NYF8-4;H0YF14 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 0 0 45.14 0.033832 14717000 4200.5 4999.8 4443.7 4458 5957.3 4959.7 5047.4 6044.3 4552.4 4152.1 FALSE FALSE TRUE 3708.123758 5153.837912 4683.939863 4639.816509 5517.841848 4865.101986 5242.079909 6732.35868 4364.748145 4127.403125 0.898415698 1.248687796 1.134839443 1.1241491 1.336879796 1.178731963 1.27006734 1.631136692 1.057504686 1 12.01101864 -1 0.253352033 0.934176003 4.914989163 0.660784771 0.11235978 18.51994343 0.231865281 0.062547711 31.94091718 0.1 1 3.98081316 EENISAPLISSS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 1 EENISAPLISSSPVK 15 0 A2A2Y4-4;A2A2Y4-3;A2A2Y4-5;A2A2Y4-2;A2A2Y4 A2A2Y4-4 FRMD3 FERM domain-containing protein 3 1 0 EENISAPLISS(0.019)S(0.981)PVK 239.58 1.35E-43 7559800 7360.4 4996.6 4501.3 4615.8 4437.6 4515.2 4051.5 3977.1 4903.3 5414.5 TRUE FALSE FALSE 6497.62507 5150.539324 4744.653894 4804.052275 4110.247089 4429.080083 4207.767712 4429.836988 4701.183899 5382.294313 1.207222179 0.956941227 0.881529998 0.892565883 0.763660783 0.822898159 0.781779566 0.823038788 0.873453517 1 12.39400557 -6.854868372 2.261160257 1.097356853 0.818239083 0.43785095 0.092789446 0.122759289 1.281807905 0.014341444 0.019718504 1.40E-07 6.854868372 -0.27911777 ELDQDMVT(ph)EDEDDPGSHKR ddPTM_HeLa_CUDC101_4h_R1 2 ELDQDMVTEDEDDPGSHKR 19 1 Q9NRL2;Q9NRL2-2;A0A087WWN7 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 ELDQDMVT(1)EDEDDPGSHKR;ELDQDMVT(1)EDEDDPGSHKR ; 61.821 0.01365 17092900 7161.8 5408.6 5216.2 5322.2 4625.4 5597.7 5630.9 4419.9 4932.5 5884.7 TRUE FALSE FALSE 6322.304661 5575.232555 5498.20355 5539.262321 4284.193457 5490.933199 5848.085699 4923.04355 4729.180262 5849.697543 1.080791719 0.953080482 0.93991245 0.946931406 0.732378627 0.938669591 0.999724457 0.841589418 0.808448681 1 12.51414632 -6.854590691 1.88796138 1.037612612 0.895233098 0 0.101341666 0.232968041 1.687714366 0.012678268 0.017595278 1.40E-07 6.854590691 -0.142379514 AET(ph)PTESVS(ph)EPEVATK ddPTM_HeLa_CUDC101_4h_R1 2 AETPTESVSEPEVATK 16 0 M0R0Q7;P18858-2;P18858;P18858-3;B4E135 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 2 0 AET(0.997)PT(0.003)ES(0.046)VS(0.953)EPEVATK;AET(1)PTES(0.094)VS(0.904)EPEVAT(0.002)K ; 189.56 1.49E-10 25648000 9843.4 7876.7 6681.8 6429.3 7836.1 7665.6 6557.3 6594 7546.1 8301.4 TRUE FALSE FALSE 8689.571574 8119.371791 7043.038319 6691.514644 7258.046515 7519.391452 6810.217258 7344.634306 7235.046564 8252.022904 1.053023201 0.983925019 0.853492338 0.810893853 0.879547548 0.911217957 0.825278521 0.890040465 0.876760359 1 13.01053211 -6.854020335 3.979158272 1.024735867 0.860593756 0.450712326 0.055768209 0.060342552 1.810311791 0.005450511 0.007310033 1.40E-07 6.854020335 -0.164142111 SSATSGDIWPGLSAYDNS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 SSATSGDIWPGLSAYDNSPR 20 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLS(0.043)AY(0.033)DNS(0.925)PR;SSATSGDIWPGLS(0.015)AYDNS(0.985)PR;SSATSGDIWPGLSAYDNS(1)PR ;;; 233.29 3.06E-44 529240400 7851.7 6103.31 5032.05 5081.26 5554.39 6188.25 4919.51 5113.81 7027.45 6239.67 TRUE FALSE FALSE 6931.335628 6291.345747 5304.097844 5288.495746 5144.653716 6070.219442 5109.257149 5695.94546 6737.775537 6202.556165 1.117496633 1.014314998 0.855147088 0.852631658 0.829440892 0.978664164 0.823734121 0.91832227 1.086290129 1 12.59864718 -6.853968745 4.568688443 1.055843366 0.87544238 0.745919765 0.051402018 0.091269869 3.381462558 0.009508015 0.012677668 1.40E-07 6.853968745 -0.180400986 MSFEILRGSDGEDS(ph)ASGGK ddPTM_HeLa_CUDC101_4h_R1 1 MSFEILRGSDGEDSASGGK 19 1 Q14674;Q14674-2 Q14674 ESPL1 Separin 1 0 MS(0.004)FEILRGS(0.051)DGEDS(0.675)AS(0.271)GGK 63.46 0.014545 8822100 1812.5 1366.9 1150 1244.4 1211.1 1323.4 1095 1007 1307.2 1430.6 TRUE FALSE FALSE 1600.041498 1409.012569 1212.172479 1295.152011 1121.759566 1298.15835 1137.234517 1121.63281 1253.316663 1422.090728 1.125133205 0.990803569 0.852387583 0.910737962 0.788810126 0.91285199 0.799691957 0.788720992 0.881319763 1 10.47379779 -6.853746004 3.143262234 1.059266529 0.84236063 0.463086344 0.075575684 0.093079594 1.85058431 0.009978334 0.013525644 1.40E-07 6.853746004 -0.216905898 AESSSGGGTVPSSAGILEQGPSPGDGS(ph)PPKPKDPVSAAVPAPGR ddPTM_HeLa_CUDC101_4h_R1 1 AESSSGGGTVPSSAGILEQGPSPGDGSPPKPKDPVSAAVPAPGR 44 2 Q68EM7-7;Q68EM7-3;Q68EM7-6;Q68EM7-5;Q68EM7 Q68EM7-7 ARHGAP17 Rho GTPase-activating protein 17 1 0 AESSSGGGTVPSSAGILEQGPS(0.207)PGDGS(0.75)PPKPKDPVS(0.043)AAVPAPGR 78.69 5.17E-09 138030000 1804.6 2035 1491.2 1871.3 2352.6 2120.3 1895 1903.4 1916.1 1516.3 TRUE FALSE FALSE 1593.067524 2097.695938 1571.818783 1947.619702 2179.053385 2079.85881 1968.090785 2120.075362 1837.117547 1507.28098 1.056914765 1.391708623 1.042817367 1.292141099 1.445684921 1.379874647 1.305722563 1.40655617 1.218828852 1 10.55773267 -6.852938379 0.599055139 1.002849663 1.391689156 0.39048891 0.122983377 0.303406475 0.230342573 0.027655392 0.045217448 1.40E-07 6.852938379 0.388839494 RAS(ph)LSDIGFGK ddPTM_HeLa_CUDC101_4h_R1 2 RASLSDIGFGK 11 1 D6R9B0;A0A0A0MSJ6;Q07002;Q07002-3;D6RA44 D6R9B0 CDK18 Cyclin-dependent kinase 18 1 0 RAS(0.98)LS(0.02)DIGFGK;RAS(0.954)LS(0.046)DIGFGK ; 81.619 0.019537 34933000 13074.2 12959.4 11335 12649.3 15923.6 16945.6 12474.3 8953 11262.9 11590.6 TRUE FALSE FALSE 11541.6621 13358.66375 11947.80439 13165.19313 14748.94775 16622.39091 12955.43793 9972.173331 10798.63849 11521.6586 1.001736165 1.159439298 1.036986497 1.142647391 1.2801063 1.442708164 1.124442095 0.865515433 0.937246873 1 13.49206079 -6.852621054 1.108444074 0.999126563 1.184529165 0.219345585 0.142721089 0.509930887 1.243806781 0.027997646 0.040762963 1.40E-07 6.852621054 0.185402602 EAALPPVS(ph)PLKAALSEEELEKK ddPTM_HeLa_CUDC101_4h_R1 2 EAALPPVSPLKAALSEEELEKK 22 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 EAALPPVS(0.992)PLKAALS(0.008)EEELEKK;EAALPPVS(0.986)PLKAALS(0.014)EEELEKK ; 55.763 0.016633 380930000 2991.2 4309 4809.7 4430.2 6719.7 4917.8 5679.5 5909.9 4635.8 3205 TRUE FALSE FALSE 2640.57607 4441.755183 5069.726931 4610.882705 6224.001119 4824.001159 5898.560218 6582.659127 4444.710362 3185.936517 0.828822563 1.394175671 1.591283098 1.447261325 1.953586044 1.514154828 1.851436833 2.066161423 1.395103241 1 11.6375018 -6.851687548 1.356079606 0.914578576 1.779393229 0.594387436 0.236898305 0.120060777 0.441371885 0.033759323 0.048057768 1.41E-07 6.851687548 0.864814653 FSGEEGEIEDDES(ph)GTENR ddPTM_HeLa_CUDC101_4h_R1 1 FSGEEGEIEDDESGTENR 18 0 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 FSGEEGEIEDDES(0.995)GT(0.005)ENR 225.17 3.42E-33 39382000 2166.6 1344.7 1083.5 904.28 901.68 1046.5 1145.3 731.44 1081 1518.9 TRUE FALSE FALSE 1912.634432 1386.128613 1142.077287 941.160447 835.1648628 1026.539756 1189.474605 814.704173 1036.440722 1509.865515 1.26675814 0.918047733 0.756409942 0.623340581 0.553138577 0.679888206 0.78780169 0.539587245 0.686445721 1 10.56020434 -6.851259617 2.444013082 1.12523591 0.648340189 0.389300487 0.167165081 0.096579033 1.178737621 0.020048387 0.027500555 1.41E-07 6.851259617 -0.476895721 KYTGEDFDEDLR ddPTM_HeLa_CUDC101_4h_R1 2 KYTGEDFDEDLR 12 1 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 96.23 0.01543 56839000 7475.1 5454 5361.8 6552.7 8005.6 7226.2 6243.4 5947.6 6008 5366.6 FALSE FALSE TRUE 6598.88011 5622.031275 5651.675127 6819.947429 7415.042837 7088.372275 6484.210029 6624.650743 5760.347697 5334.679225 1.236977863 1.053864916 1.059421736 1.278417528 1.389969767 1.328734489 1.215482648 1.241808638 1.079792703 1 12.38118581 -6.219545218 7.699220672 1.105917618 1.294804797 0.657936619 0.073142398 0.201081598 33.04809885 0.015246452 0.025234374 6.03E-07 6.219545218 0.188887179 ASPSCS(ph)SPTRDSSGVPVSK ddPTM_HeLa_CUDC101_4h_R1 2 ASPSCSSPTRDSSGVPVSK 19 1 Q8N5I9;J3KN91;A0A087WT30 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 ASPS(0.042)CS(0.815)S(0.138)PT(0.004)RDSSGVPVSK;ASPS(0.174)CS(0.712)S(0.108)PT(0.005)RDSSGVPVSK ; 131.56 2.26E-05 280860000 5302.3 6080.2 5662 6149 8145.2 6097.5 6619.8 7450.7 6111.2 4280.6 TRUE FALSE FALSE 4680.772432 6267.523755 5968.104847 6399.782798 7544.344824 5981.200347 6875.127903 8298.857571 5859.293749 4255.138801 1.100028143 1.472930508 1.402564082 1.5040127 1.772996176 1.405641655 1.615723535 1.950314187 1.376992391 1 12.05499048 -6.849444429 0.620376194 1.003620377 1.706882072 0.537391319 0.182384167 0.220837858 0.178288564 0.036682353 0.059722862 1.41E-07 6.849444429 0.703261695 KYTMGDAPDYDR ddPTM_HeLa_CUDC101_4h_R1 2 KYTMGDAPDYDR 12 1 H3BQT3;E9PLF1;B9ZVX7;E9PHN7;E9PHN6;A0A0A0MR85;F6XZQ7;E7EWW9;Q03013-3;P09488-2;P28161-2;Q03013-2;Q03013;P28161;P09488 H3BQT3 GSTM1;GSTM2;GSTM4 Glutathione S-transferase Mu 4;Glutathione S-transferase Mu 1;Glutathione S-transferase Mu 2 0 0 ; ; 90.793 0.021396 41289000 7255.8 6290.3 7377.6 7067.9 8489 6937.4 5888.8 6581.1 7154.1 7177 FALSE FALSE TRUE 6405.286123 6484.096687 7776.455372 7356.159512 7862.783382 6805.080653 6115.932989 7330.265822 6859.20497 7134.310885 0.897814271 0.908860967 1.090007921 1.031096013 1.10210832 0.953852553 0.857256305 1.027466554 0.961439035 1 12.80055837 -6.797744204 24.99997919 0.947181004 1.00589461 0.182426615 0.070094926 292.3623164 201323.5328 0.012741774 0.016746229 1.59E-07 6.797744204 0.058713606 KS(ph)QPRT(ph)WAAHTTACPPSFLPK ddPTM_HeLa_CUDC101_4h_R1 1 KSQPRTWAAHTTACPPSFLPK 21 2 K7EPV3;Q6PJF5 K7EPV3 RHBDF2 Inactive rhomboid protein 2 2 0 KS(0.994)QPRT(0.787)WAAHT(0.102)T(0.102)ACPPS(0.015)FLPK 46.362 0.024979 25707000 1999.7 4029.2 3199.4 4565.2 6707.2 5762.2 5599.7 3424.4 4986.7 1596.3 TRUE FALSE FALSE 1765.298197 4153.334876 3372.369242 4751.388588 6212.423219 5652.295635 5815.682305 3814.219854 4781.146115 1586.805137 1.11248581 2.617419606 2.125257326 2.994311323 3.915051115 3.562060334 3.66502614 2.403710302 3.013064431 1 10.63190926 -6.849158859 1.021561522 1.007721821 3.403635462 0.314588679 0.7913028 0.133278412 0.276162934 0.091082395 0.134436969 1.42E-07 6.849158859 2.395913641 VNSNGKES(ph)PGSSEFFQEAVSHGK ddPTM_HeLa_CUDC101_4h_R1 2 VNSNGKESPGSSEFFQEAVSHGK 23 1 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 VNS(0.211)NGKES(0.702)PGS(0.068)S(0.019)EFFQEAVSHGK;VNS(0.197)NGKES(0.637)PGS(0.136)S(0.03)EFFQEAVSHGK ; 56.46 0.006497 80118000 8990.2 7226.5 6840.2 5532.8 6005.6 6491.9 5205.2 5099.3 8682.5 9038.9 TRUE FALSE FALSE 7936.382384 7449.139899 7210.001902 5758.451499 5562.578853 6368.077824 5405.966308 5679.7837 8324.603675 8985.136221 0.883279028 0.829051415 0.802436571 0.640886388 0.619086758 0.7087347 0.601656578 0.632131062 0.926486084 1 13.13332466 -6.84849343 0.560730325 0.978940218 0.609224619 0.90782118 0.041294119 0.142336982 0.096224963 0.012115111 0.020128219 1.42E-07 6.84849343 -0.369715599 RMIVVLS(ph)PDY(ph)VT(ph)EK ddPTM_HeLa_CUDC101_4h_R1 1 RMIVVLSPDYVTEK 14 1 Q9NPH3-5 Q9NPH3-5 3 0 RMIVVLS(1)PDY(1)VT(1)EK 52.823 0.0033615 0 427.06 453.26 487.63 573.14 675.21 436.16 409.18 441.78 766.13 515.67 TRUE FALSE FALSE 377.0006742 467.2244034 513.9927528 596.5151265 625.4011035 427.8409747 424.9622097 492.0704495 734.5497971 512.6027719 0.735463589 0.911474594 1.002711614 1.163698597 1.220050179 0.834644286 0.82902831 0.959944964 1.43298054 1 9.00169747 -6.848171231 4.564831539 0.872914579 1.003505751 0 0.219646363 0.341167031 12.84016867 0.02580856 0.03444578 1.42E-07 6.848171231 0.130591172 LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVK ddPTM_HeLa_CUDC101_4h_R1 3 LAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVK 36 1 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 0 0 ;; ;; 164.41 1.27E-24 160694000 22480.8 21477.4 20165.6 20851.2 25683.4 24844 22736.2 18326.7 27735.3 38185 FALSE FALSE TRUE 19845.6347 22139.09324 21255.81333 21701.60206 23788.78675 24370.14209 23613.14285 20412.93745 26592.03919 37957.87392 0.522833148 0.583254301 0.559984297 0.571728599 0.626715469 0.642031272 0.622088131 0.537778736 0.700567141 1 15.21211157 -9.275441873 0.868834528 1.015849438 0.583200768 0.447981488 0.09747529 0.127420786 0.162612676 0.036959719 0.008698765 5.30E-10 9.275441873 -0.432648671 LAAEVTK(ac)LVHGR ddPTM_HeLa_CUDC101_4h_R1 1 LAAEVTKLVHGR 12 1 Q9Y2Z4 Q9Y2Z4 YARS2 "Tyrosine--tRNA ligase, mitochondrial" 0 1 LAAEVTK(1)LVHGR 124.12 0.0013693 279790 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SGLEPAS(ph)SPSK ddPTM_HeLa_CUDC101_4h_R1 2 SGLEPASSPSK 11 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;Q9Y618-2 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 SGLEPAS(0.498)S(0.498)PS(0.004)K;SGLEPAS(0.478)S(0.478)PS(0.044)K ; 145.23 0.0010752 524420000 22283 17931.3 19069.9 16285.5 16550.7 15762.3 15779.7 14717.6 17444.7 22219.8 TRUE FALSE FALSE 19671.02052 18483.7421 20100.87648 16949.69308 15329.78783 15461.66039 16388.32831 16392.99209 16725.62208 22087.63564 0.890589687 0.836836608 0.910051071 0.767383769 0.694043857 0.700014281 0.741968429 0.742179578 0.757239134 1 14.43095137 -6.847697509 0.404113029 0.99263243 0.687485073 0.273634952 0.081897489 0.304731278 0.120009435 0.020726789 0.03552344 1.42E-07 6.847697509 -0.305147357 EKDS(ph)PHMQDPNQADEEAMTQIIR ddPTM_HeLa_CUDC101_4h_R1 3 EKDSPHMQDPNQADEEAMTQIIR 23 1 P23511-2;P23511 P23511-2 NFYA Nuclear transcription factor Y subunit alpha 1 0 EKDS(1)PHMQDPNQADEEAMTQIIR;EKDS(1)PHMQDPNQADEEAMTQIIR;EKDS(1)PHMQDPNQADEEAMTQIIR ;; 88.394 0.00016648 61092000 3962.9 3559.22 3642.38 3742.66 4233.1 3973.55 3522.07 3711.65 3942.91 3624.17 TRUE FALSE FALSE 3498.374869 3668.875349 3839.29808 3895.301852 3920.832647 3897.761154 3657.91742 4134.169233 3780.381581 3602.613276 0.971065891 1.01839278 1.065698088 1.081243407 1.08833015 1.081926051 1.015351119 1.147547327 1.049344265 1 11.81482808 -6.847585573 2.575714487 0.986421572 1.078995142 0.447883242 0.036493602 0.116826317 1.58299235 0.004833852 0.006622946 1.42E-07 6.847585573 0.09257357 DYDEEEQGYDS(ph)EKEK ddPTM_HeLa_CUDC101_4h_R1 2 DYDEEEQGYDSEKEK 15 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 DYDEEEQGY(0.001)DS(0.999)EKEK;DYDEEEQGYDS(1)EKEK ; 85.046 0.0086996 730570000 8716.8 6856.1 6941 6217.7 6494.1 6520.9 6111.7 6134.2 6868.3 8105.4 TRUE FALSE FALSE 7695.029918 7067.328315 7316.251455 6471.284681 6015.043181 6396.524697 6347.430316 6832.492533 6585.185767 8057.18872 0.955051468 0.877145684 0.908040225 0.803169059 0.746543663 0.79389039 0.787797151 0.847999565 0.817305638 1 12.97606083 -6.847409622 0.883083952 0.986193943 0.789490949 0.337163086 0.062265899 0.131347282 0.204470556 0.006918227 0.010480143 1.42E-07 6.847409622 -0.196702994 RNSSS(ph)PVS(ph)PASVPGQR ddPTM_HeLa_CUDC101_4h_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 RNS(0.004)S(0.062)S(0.979)PVS(0.859)PAS(0.096)VPGQR 100.23 0.0084101 13172000 3420.1 3095.4 3221.8 3232.5 3943.5 3339.6 2887 3440 3933.8 3205.6 TRUE FALSE FALSE 3019.201063 3190.765605 3395.980253 3364.335322 3652.595862 3275.902694 2998.352557 3831.595695 3771.647099 3186.532949 0.94748779 1.001328295 1.0657289 1.055798065 1.14626019 1.028046076 0.940945098 1.202434043 1.183620932 1 11.63777186 -6.84738687 3.497586516 0.975136394 1.06817309 0 0.093265315 0.215238776 5.219107445 0.010424289 0.014085999 1.42E-07 6.84738687 0.093036696 ASWES(ph)LDEEWRAPQAGSR ddPTM_HeLa_CUDC101_4h_R1 1 ASWESLDEEWRAPQAGSR 18 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 AS(0.008)WES(0.992)LDEEWRAPQAGSR 62.999 0.019373 4693900 952.07 783.27 606.19 560.12 925.74 850.15 714.62 576.12 764.69 744.16 TRUE FALSE FALSE 840.4697978 807.4016203 638.962465 582.9641146 857.4500045 833.9348052 742.1831328 641.703172 733.1691545 739.7337032 1.136178863 1.09147605 0.863773629 0.78807294 1.159133349 1.127344613 1.003311232 0.86747862 0.991125795 1 9.530862198 -6.847257874 24.99999857 1.068141531 0.977465874 0.11184652 0.115228646 40.73015279 11858.74331 0.020047383 0.026347426 1.42E-07 6.847257874 -0.090675657 YSDTTDS(ph)DPENEPFDEDQHTQITK ddPTM_HeLa_CUDC101_4h_R1 1 YSDTTDSDPENEPFDEDQHTQITK 24 0 P60484;P60484-2 P60484 PTEN "Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN" 1 0 YS(0.001)DT(0.004)T(0.024)DS(0.97)DPENEPFDEDQHTQITK 154.77 5.22E-09 7874600 1110.7 921.96 621.42 796.08 783.75 675.83 829.46 573.51 939.59 994.42 TRUE FALSE FALSE 980.5054297 950.3644948 655.0158449 828.5475834 725.934324 662.9396688 861.45255 638.7960602 900.8597025 988.5051456 0.991907259 0.96141583 0.662632711 0.838182368 0.734375868 0.670648678 0.87146997 0.646224315 0.91133537 1 9.949104666 -6.84628242 6.163682324 0.994873144 0.745194281 0.692943053 0.073741489 0.067215733 3.923554337 0.009943583 0.013145796 1.42E-07 6.84628242 -0.249678862 VGEEEHVY(ph)SFPNK ddPTM_HeLa_CUDC101_4h_R1 1 VGEEEHVYSFPNK 13 0 F5GZ78;A0A1B0GTU4;P49023;P49023-2;P49023-3;A0A1B0GU60;F5H836 F5GZ78 PXN Paxillin 1 0 VGEEEHVY(0.736)S(0.264)FPNK 104.43 0.039198 38144000 4770.8 4442.2 4719.2 4295.3 6855.2 5578.2 4402.2 3065.8 4848.1 4726.7 TRUE FALSE FALSE 4211.574056 4579.058917 4974.334227 4470.4809 6349.505553 5471.805129 4571.994329 3414.79828 4648.259266 4698.585378 0.896349373 0.974561181 1.058687632 0.95145252 1.351365367 1.164564372 0.973057625 0.726771572 0.989289093 1 12.19801075 -6.846199439 4.285885516 0.950372686 1.051006156 0.046104962 0.152086856 0.446979427 15.33349647 0.025545987 0.034201562 1.42E-07 6.846199439 0.10063347 RNSS(ph)SPVS(ph)PASVPGQR ddPTM_HeLa_CUDC101_4h_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 RNS(0.182)S(0.568)S(0.278)PVS(0.843)PAS(0.129)VPGQR 137.27 0.00073641 16897000 2990.2 2644.8 2827.2 3080.9 3035.6 2725.9 2404.3 2814.4 3258.6 2816.9 TRUE FALSE FALSE 2639.693289 2726.283153 2980.046984 3206.552419 2811.669836 2673.907999 2497.034656 3134.77992 3124.279129 2800.144954 0.9426988 0.973622151 1.064247399 1.14513801 1.004115816 0.954917707 0.891751926 1.119506301 1.115756213 1 11.4512858 -6.845648176 11.37578802 0.972190162 1.024301198 0 0.083849617 0.864326624 111.8740403 0.011938912 0.015695238 1.43E-07 6.845648176 0.052111036 MPSFGMLS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 2 MPSFGMLSPGK 11 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 MPSFGMLS(1)PGK;MPSFGMLS(1)PGK ; 113.24 0.0060627 46926000 5634.5 3694.9 2388.9 3467.8 2966.7 2590.58 2948.3 2516.75 2713.5 3009.2 TRUE FALSE FALSE 4974.032451 3808.735489 2518.05116 3609.231873 2747.852451 2541.169003 3062.016919 2803.246647 2601.648381 2991.301145 1.662832397 1.273270495 0.84179126 1.206575901 0.918614449 0.849519617 1.023640473 0.937132877 0.869738036 1 11.54655744 -6.844750554 6.733968585 1.320392004 0.970147249 0.135319645 0.227483415 0.209321575 13.9839863 0.042154516 0.055637227 1.43E-07 6.844750554 -0.350244755 LADDVDLEQVANETHGHVGADLAALCSEAALQAIR ddPTM_HeLa_CUDC101_4h_R1 1 LADDVDLEQVANETHGHVGADLAALCSEAALQAIR 35 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 119.33 2.12E-18 12308000 830.03 771.55 849.31 584.88 858.02 923.75 899.1 1128.8 979.22 988.94 FALSE FALSE TRUE 732.7351416 795.320541 895.2262676 608.7339345 794.725574 906.1310078 933.7785882 1257.298029 938.8561371 983.0577409 0.745363279 0.809027291 0.910654817 0.619225005 0.80842207 0.921747493 0.949871558 1.278966613 0.955036615 1 9.941132347 -4.108541095 1.618895978 0.851767035 1.564327729 0.610933913 0.104210913 0.961524325 1.76163076 0.017907157 1.201283531 7.79E-05 4.108541095 0.712560694 LADFGVLHR ddPTM_HeLa_CUDC101_4h_R1 2 LADFGVLHR 9 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 ; ; 172.25 2.43E-07 28396000 27855 18953.2 13981.7 17357 17444.1 17703.9 15751.6 16094.8 12789 10379.3 FALSE FALSE TRUE 24589.87913 19537.12563 14737.59299 18064.89348 16157.2835 17366.2276 16359.14449 17926.96697 12261.83201 10317.56346 2.38330292 1.8935794 1.42839858 1.750887557 1.565997976 1.683171387 1.585562769 1.737519429 1.188442606 1 13.33281469 -6.759498159 24.99625101 1.689504752 1.62910154 0 0.364026328 578.1813872 7444903.908 0.08376886 0.115043034 1.74E-07 6.759498159 -0.060403212 FFS(ph)RS(ph)RKS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 FFSRSRKSK 9 3 A0A494C1R6 A0A494C1R6 3 0 FFS(1)RS(1)RKS(1)K 55.461 0.0032019 0 1191.7 1048.6 989.89 1285.4 1357.5 1482.9 1159.6 1126.1 1391.7 901.43 TRUE FALSE FALSE 1052.010732 1080.906123 1043.406448 1337.824168 1257.35993 1454.616153 1204.32616 1254.290672 1334.333537 896.0682543 1.174029687 1.206276551 1.164427422 1.492993599 1.403196602 1.623331868 1.344011636 1.399771352 1.489098102 1 9.807464818 -6.844536696 0.583915345 1.041032631 1.477558682 0.118145871 0.169109043 0.271482473 0.196833723 0.027479021 0.0454603 1.43E-07 6.844536696 0.436526051 LADK(ac)YPVVHIGK ddPTM_HeLa_CUDC101_4h_R1 2 LADKYPVVHIGK 12 1 C9JXZ0;E7ETU9;O00469;O00469-2 C9JXZ0 PLOD2 "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2" 0 1 ; LADK(1)YPVVHIGK;LADK(1)YPVVHIGK 65.234 0.028773 0 1352.45 465.21 582.31 523.98 1120.16 1110.27 1175.65 897.99 1007.6 991.7 FALSE TRUE FALSE 1193.917861 479.5425687 613.79144 545.3501692 1037.528028 1089.09345 1220.995214 1000.213552 966.0663015 985.8013243 1.211114077 0.486449507 0.62263199 0.553204947 1.052471733 1.104779861 1.23858143 1.014619809 0.97998073 1 9.945153109 RPEGPGAQAPSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 RPEGPGAQAPSSPR 14 1 P40222 P40222 TXLNA Alpha-taxilin 1 0 RPEGPGAQAPS(0.143)S(0.857)PR;RPEGPGAQAPS(0.006)S(0.994)PR;RPEGPGAQAPS(0.249)S(0.751)PR;RPEGPGAQAPS(0.035)S(0.965)PR ;;; 147.53 0.00062578 1628889600 8626.1 7692.7 8371.5 8646 8676.96 7648.53 7730.83 9651.13 7742.01 8052.62 TRUE FALSE FALSE 7614.961634 7929.702969 8824.088612 8998.621251 8036.877948 7502.647034 8029.010703 10749.77563 7422.881071 8004.722658 0.951308616 0.990628071 1.102360318 1.124164026 1.00401704 0.937277574 1.003034214 1.342929179 0.927312711 1 12.9666357 -6.84432116 6.146071612 0.976845852 1.073011766 0.230497991 0.103987629 0.286482024 16.92428924 0.016363896 0.021638173 1.43E-07 6.84432116 0.096165915 LADSALER ddPTM_HeLa_CUDC101_4h_R1 1 LADSALER 8 0 P28221 P28221 HTR1D 5-hydroxytryptamine receptor 1D 0 0 120.62 0.040672 17696000 3289.7 3385.4 2682.4 2645.6 2896.7 2922.2 2775.4 3026.5 2904.1 3020.9 FALSE FALSE TRUE 2904.086353 3489.700161 2827.418658 2753.499003 2683.016212 2866.463904 2882.448108 3371.024526 2784.391769 3002.931552 0.967083765 1.162097804 0.941552815 0.916936985 0.893465657 0.954555192 0.959878058 1.122577877 0.92722452 1 11.55215588 IEDVGSDEEDDS(ph)GK ddPTM_HeLa_CUDC101_4h_R1 1 IEDVGSDEEDDSGK 14 0 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 0 IEDVGS(0.25)DEEDDS(0.75)GK 142.95 0.00043536 1048200000 4822.2 3570 3823.6 3581.5 3232.6 3925.6 3236.2 2677.2 4703.1 4790.3 TRUE FALSE FALSE 4256.949026 3679.987469 4030.315382 3727.569051 2994.137538 3850.72572 3361.021318 2981.961626 4509.236227 4761.807083 0.893977633 0.772813221 0.846383592 0.782805558 0.628781781 0.808668989 0.705828955 0.626224787 0.946959032 1 12.21729346 -6.844235917 0.296431145 1.025898429 0.621770329 0.768273846 0.057374353 0.52283833 0.129649007 0.048597371 0.080820351 1.43E-07 6.844235917 -0.4041281 SEEVPAFGVAS(ph)PPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK ddPTM_HeLa_CUDC101_4h_R1 2 SEEVPAFGVASPPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK 44 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 1 0 SEEVPAFGVAS(0.776)PPPLT(0.084)DT(0.084)PDT(0.028)T(0.028)ANAEGDLPTTMGGPLPPHLALK;SEEVPAFGVAS(0.763)PPPLT(0.086)DT(0.086)PDT(0.032)T(0.032)ANAEGDLPTTMGGPLPPHLALK ; 63.354 4.64E-05 12782600 4951.6 3599.2 2951.7 3015.7 3735.6 3724.6 2927 2271.3 4163.4 3406.7 TRUE FALSE FALSE 4371.180954 3710.087086 3111.27783 3138.693281 3460.03223 3653.559461 3039.89537 2529.855611 3991.78289 3386.436797 1.29079065 1.095572517 0.918746759 0.926842421 1.02173241 1.078880156 0.89766783 0.747055316 1.178756058 1 11.72555235 -6.843545041 4.954350661 1.139735295 0.940914085 0.491066316 0.104923399 0.186299784 8.084012365 0.021986289 0.029269354 1.43E-07 6.843545041 -0.19882121 DLLHPS(ph)PEEEK ddPTM_HeLa_CUDC101_4h_R1 2 DLLHPSPEEEK 11 0 P42677 P42677 RPS27 40S ribosomal protein S27 1 0 DLLHPS(1)PEEEK;DLLHPS(1)PEEEK ; 146.67 0.00095427 40449000 7132.5 5640.1 4824.8 4992.2 5176.9 5374 4722.8 4028.1 6209.7 6188.4 TRUE FALSE FALSE 6296.439162 5813.864796 5085.643282 5195.803494 4795.010401 5271.499904 4904.959978 4486.642622 5953.733538 6151.591122 1.023546435 0.945099354 0.826719979 0.844627575 0.779474823 0.856932751 0.797348179 0.72934669 0.967836356 1 12.5867439 -6.842594136 2.125597584 1.011493872 0.803522476 0.857516362 0.036033932 0.066308765 0.611941031 0.005586345 0.00773864 1.44E-07 6.842594136 -0.207971396 LAEDEAFQR ddPTM_HeLa_CUDC101_4h_R1 1 LAEDEAFQR 9 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 131.22 0.016838 9221100 5811.7 4461.2 4657.6 4906.1 4313.8 4237 4509.4 4244.6 5020.5 5499.9 FALSE FALSE TRUE 5130.461336 4598.644284 4909.403944 5106.191964 3995.579568 4156.186284 4683.329069 4727.788107 4813.552865 5467.18635 0.938409816 0.841135456 0.897976332 0.933970719 0.730829226 0.760205711 0.856625103 0.86475708 0.880444265 1 12.41658284 -7.196598729 0.542381025 0.993272322 0.811720893 0.288430939 0.064807603 0.391913837 0.263948055 0.019824393 0.02477928 6.36E-08 7.196598729 -0.181551429 LAEDEAFQRR ddPTM_HeLa_CUDC101_4h_R1 1 LAEDEAFQRR 10 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 89.029 0.031325 8264600 3802.6 4283.2 4065.5 3589.9 5024.4 4408.5 3871.5 4351.5 4180 3159.2 FALSE FALSE TRUE 3356.864992 4415.160315 4285.293227 3736.311639 4653.760022 4324.415208 4020.825052 4846.857171 4007.698631 3140.408938 1.068926073 1.405918911 1.364565352 1.189753218 1.481896184 1.377022959 1.280350786 1.543384084 1.276170941 1 11.61673672 -7.313561502 4.799779247 1.030385235 1.370397459 0.457036655 0.121107915 0.072840532 3.677576579 0.015377471 0.017678112 4.86E-08 7.313561502 0.340012224 EVADIFNAPS(ph)DDEEFVGFR ddPTM_HeLa_CUDC101_4h_R1 3 EVADIFNAPSDDEEFVGFR 19 0 Q96GN5-5;Q96GN5-2;Q96GN5 Q96GN5-5 CDCA7L Cell division cycle-associated 7-like protein 1 0 EVADIFNAPS(1)DDEEFVGFR;EVADIFNAPS(1)DDEEFVGFR;EVADIFNAPS(1)DDEEFVGFR ;; 234.12 6.44E-44 27958500 6610.9 5079.56 3878.55 3617.4 3949.1 4380.69 3564.56 2958.94 5481.87 5944.42 TRUE FALSE FALSE 5835.980323 5236.055223 4088.236145 3764.933208 3657.782761 4297.135637 3702.046273 3295.773769 5255.904998 5909.062325 0.987632217 0.886105939 0.691858694 0.637145625 0.619012385 0.727211087 0.626503169 0.557749028 0.889465148 1 12.5287135 -6.840359929 2.040673995 0.99504257 0.636528107 0.891274794 0.051235864 0.046494515 0.395172253 0.006612633 0.009187954 1.44E-07 6.840359929 -0.358514463 LAELEEFINGPNNAHIQQVGDR ddPTM_HeLa_CUDC101_4h_R1 2 LAELEEFINGPNNAHIQQVGDR 22 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ; ; 185.23 1.85E-13 31851000 2089.34 1979.83 1475.34 1790.93 2157.71 1820.3 1693.75 1593.01 1861.58 1648.59 FALSE FALSE TRUE 1844.430732 2040.826216 1555.101343 1863.971866 1998.540032 1785.58081 1759.078505 1774.351819 1784.844884 1638.784113 1.125487316 1.245329509 0.948936062 1.137411482 1.21952612 1.089576593 1.073404661 1.082724567 1.089127524 1 10.6784101 -9.157135495 0.927149641 1.000455427 1.115526073 0.06761085 0.081646873 0.648880932 1.012390644 0.049045483 0.014356589 6.96E-10 9.157135495 0.115070646 LAEQAERYDEMVESMK ddPTM_HeLa_CUDC101_4h_R1 1 LAEQAERYDEMVESMK 16 1 P62258;B4DJF2;I3L3T1 P62258 YWHAE 14-3-3 protein epsilon 0 0 115.38 0.0012143 3030200 642.45 562.98 676.05 665.6 1153.5 767.09 580.63 1146.5 816.34 498.02 FALSE FALSE TRUE 567.1429849 580.3247465 712.5993079 692.746045 1068.408603 752.4590363 603.0250936 1277.012926 782.6901197 495.0577549 1.145609738 1.172236453 1.439426614 1.399323691 2.158149413 1.519941924 1.21809039 2.579523122 1.581007694 1 8.951453034 -1 0.191273316 0.914239982 6.353723172 0.337152159 0.379891933 30.38459928 0.34087697 0.343295411 49.22426004 0.1 1 5.43948319 DTNIDHGQPRPPS(ph)NR ddPTM_HeLa_CUDC101_4h_R1 1 DTNIDHGQPRPPSNR 15 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 DTNIDHGQPRPPS(1)NR 63.392 0.032087 9191200 792.73 981.29 1433.4 1765.9 1841.2 1746.5 1659.5 1271 570.06 708.15 TRUE FALSE FALSE 699.8073911 1011.522382 1510.89394 1837.921035 1705.378344 1713.188422 1723.507471 1415.685502 546.5618855 703.9378923 0.994132293 1.436948334 2.146345518 2.610913626 2.422626148 2.433720987 2.44838002 2.011094328 0.776434813 1 9.459304337 -6.839944448 2.248556437 0.997198324 2.397058338 0.942417252 0.160843966 0.040414904 0.417851319 0.023576074 0.032596629 1.45E-07 6.839944448 1.399860014 up EAVVDLHADDSRIS(ph)EDETER ddPTM_HeLa_CUDC101_4h_R1 1 EAVVDLHADDSRISEDETER 20 1 Q9UKV3-5 Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 EAVVDLHADDS(0.181)RIS(0.78)EDET(0.039)ER 71.637 0.0045011 119270000 2104 1301.4 1361.1 1339.3 1152.3 1184.6 1309.3 1071.1 1453.1 1577.6 TRUE FALSE FALSE 1857.372309 1341.494591 1434.685183 1393.922443 1067.297125 1162.005729 1359.80014 1193.029694 1393.202603 1568.216365 1.184385236 0.855426981 0.914851557 0.888858498 0.680580275 0.740972837 0.867099827 0.760755799 0.88839948 1 10.6149089 -6.839826396 1.541754173 1.084781911 0.78780209 0.40949962 0.103800711 0.171680223 0.822577767 0.017591874 0.024900706 1.45E-07 6.839826396 -0.29697982 KDDS(ph)DDDGGGWITPSNIK ddPTM_HeLa_CUDC101_4h_R1 3 KDDSDDDGGGWITPSNIK 18 1 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 1 0 KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK;KDDS(1)DDDGGGWITPSNIK ;; 112.42 0.00020174 786527000 16208.1 12760.2 12479.7 12328.6 12150.8 11984 11660.2 10562.8 13517.3 15179.8 TRUE FALSE FALSE 14308.21109 13153.32664 13154.39033 12831.4136 11254.45969 11755.42517 12109.93782 11765.22646 12960.11117 15089.50987 0.948222388 0.871686804 0.871757296 0.850353239 0.745846604 0.779046189 0.80254017 0.779695733 0.858882182 1 13.88125833 -6.83796157 0.645237615 0.989893277 0.772379977 0.601861429 0.04732005 0.121335596 0.104978355 0.006270336 0.010214922 1.45E-07 6.83796157 -0.217513301 DKEIS(ph)PSVTK ddPTM_HeLa_CUDC101_4h_R1 1 DKEISPSVTK 10 1 Q8N488 Q8N488 RYBP RING1 and YY1-binding protein 1 0 DKEIS(0.5)PS(0.5)VTK 122.46 0.021186 20017000 2929.4 2265.7 1756.2 1865.7 1693.1 1933.9 1457.4 1641.8 2058.4 2667.1 TRUE FALSE FALSE 2586.020173 2335.503531 1851.145484 1941.79131 1568.203386 1897.01408 1513.612406 1828.695876 1973.551881 2651.235971 0.975401738 0.880911227 0.698219813 0.732409839 0.591498985 0.715520648 0.570908219 0.689752212 0.744389373 1 11.37244937 -6.836604654 1.464473008 0.992231681 0.649214131 0.571046679 0.091340918 0.064636045 0.278723916 0.007456381 0.010614866 1.46E-07 6.836604654 -0.34301755 RLAVPTEVSTEVPEMDT(ph)ST ddPTM_HeLa_CUDC101_4h_R1 2 RLAVPTEVSTEVPEMDTST 19 1 O00488 O00488 ZNF593 Zinc finger protein 593 1 0 RLAVPTEVSTEVPEMDT(0.359)S(0.359)T(0.281);RLAVPTEVSTEVPEMDT(0.423)S(0.289)T(0.289) ; 86.005 0.0217 43259000 2141.8 1733.02 1646.41 1487.46 1753.67 1678.72 1662.55 1904.4 1978.38 1773.92 TRUE FALSE FALSE 1890.741451 1786.412292 1735.419905 1548.125048 1624.305258 1646.701213 1726.67511 2121.189198 1896.830339 1763.368645 1.072232659 1.013067969 0.98415037 0.877936132 0.921137655 0.93383832 0.979191229 1.202918745 1.075685645 1 10.7841184 -6.836268253 3.707766433 1.034335994 0.972890135 0.095443916 0.084057099 0.421258676 11.48645135 0.013878891 0.01875553 1.46E-07 6.836268253 -0.061445859 RTIQEVLEEQS(ph)EDEDR ddPTM_HeLa_CUDC101_4h_R1 2 RTIQEVLEEQSEDEDR 16 1 M0R0Q7;P18858-2;P18858;P18858-3 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 0 RTIQEVLEEQS(1)EDEDR;RTIQEVLEEQS(1)EDEDR ; 198.77 1.22E-16 11997400 3712.8 2638.7 2135.12 2443.1 2094.52 2570.4 2274.7 2164.6 2800.5 2371.8 TRUE FALSE FALSE 3277.591212 2719.995219 2250.551046 2542.740178 1940.011432 2521.373903 2362.435941 2411.009314 2685.062205 2357.692428 1.390169122 1.153668386 0.954556675 1.078486807 0.822843306 1.069424439 1.00201193 1.022614013 1.138851774 1 11.20315981 -6.835341819 5.722949383 1.188281683 0.992134915 0.381923007 0.111196101 0.212394366 12.1638961 0.025287662 0.033532594 1.46E-07 6.835341819 -0.196146768 EESYS(ph)PSKDR ddPTM_HeLa_CUDC101_4h_R1 1 EESYSPSKDR 10 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 EES(0.433)YS(0.565)PS(0.002)KDR 148.78 0.0028458 58282000 5195 4005.3 3865.3 4109.8 3877.8 3878.7 3884.5 3531.1 4547.5 4531 TRUE FALSE FALSE 4586.049975 4128.698546 4074.26981 4277.415408 3591.74242 3804.72026 4034.326466 3933.066151 4360.050125 4504.04941 1.018205965 0.916663688 0.904579288 0.949682168 0.797447384 0.844733242 0.89571097 0.873228909 0.968028929 1 12.13700694 -6.834260147 1.127543969 1.009906974 0.864450346 0.636841085 0.039444325 0.166735293 0.42153937 0.007203813 0.010566661 1.46E-07 6.834260147 -0.145456628 LAGTSGSDK(ac)GLSGK ddPTM_HeLa_CUDC101_4h_R1 1 LAGTSGSDKGLSGK 14 1 Q9P016-2;Q9P016 Q9P016-2 THYN1 Thymocyte nuclear protein 1 0 1 LAGTSGSDK(1)GLSGK 188.09 1.24E-11 1317900 769.68 692.04 938.84 1011.4 1240.8 1073 1078.2 994.93 386.51 632.2 FALSE TRUE FALSE 679.4592772 713.3609321 989.5965302 1052.649264 1149.268656 1052.534313 1119.786535 1108.18881 370.5778942 628.4396463 1.081184615 1.135130376 1.574688255 1.675020457 1.82876536 1.674837542 1.78185215 1.763397354 0.589679369 1 9.295630388 -6.701656275 1.889072037 1.035409758 1.752880988 0.864299222 0.148758268 0.031056065 0.226509546 0.00830474 0.01224398 1.99E-07 6.701656275 0.71747123 LAHEVGWK ddPTM_HeLa_CUDC101_4h_R1 2 LAHEVGWK 8 0 Q8J015;M0QYS1;P40429 Q8J015 RPL13a;RPL13A 60S ribosomal protein L13a 0 0 ; ; 83.265 0.035339 44221000 28627 24746 25198 24925 23385 23916 22958 26254 24832 21009 FALSE FALSE TRUE 25271.38646 25508.39493 26560.2801 25941.54924 21659.93514 23459.84215 23843.49775 29242.64924 23808.41445 20884.03753 1.210081452 1.221430238 1.27179814 1.242171165 1.037152663 1.12333844 1.141709198 1.400239259 1.140029288 1 14.35011304 -9.146136373 0.822182656 0.995193777 1.199603101 0.173616058 0.100607584 0.542896105 0.64080923 0.069561705 0.018415905 7.14E-10 9.146136373 0.204409324 LAHYIDR ddPTM_HeLa_CUDC101_4h_R1 1 LAHYIDR 7 0 Q03252 Q03252 LMNB2 Lamin-B2 0 0 82.671 0.0020208 0 2552.7 2170.3 1945.2 2953.6 1984.6 1856.9 1946.2 1633.6 1976.2 1648.8 FALSE FALSE TRUE 2253.476376 2237.164371 2050.363396 3074.060575 1838.200012 1821.482726 2021.265586 1819.562421 1894.7402 1638.992864 1.374915306 1.36496285 1.250989825 1.875578986 1.121542413 1.111342682 1.233236355 1.110171045 1.156039322 1 10.67859386 -9.294032034 0.994852453 0.998103667 1.312505973 0.134753038 0.217369998 0.668003598 1.173378376 0.14952613 0.039186507 5.08E-10 9.294032034 0.314402306 LAHYNK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 LAHYNKR 7 1 O60814;P58876;P62807;Q16778;Q5QNW6;Q5QNW6-2;Q8N257;Q93079;U3KQK0;Q99877;Q99879;Q99880;Q6DRA6;Q6DN03 O60814;P58876;P62807;Q16778;Q5QNW6;Q8N257;Q93079;U3KQK0;Q99879;Q99880;Q6DRA6 HIST1H2BK;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST2H2BF;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BM;HIST1H2BL;HIST2H2BD;HIST2H2BC Histone H2B type 1-K;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 2-F;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L;Putative histone H2B type 2-D;Putative histone H2B type 2-C 0 1 LAHYNK(1)R 79.939 0.036784 402140 773.43 374.78 441.18 559.63 749.17 713.27 688.93 379.13 432.31 200.47 FALSE TRUE FALSE 682.7697078 386.3265276 465.0315253 582.4541303 693.9052217 699.6655631 715.5022609 422.2886267 414.4899988 199.2775955 3.426224137 1.938635031 2.333586593 2.922827972 3.482103544 3.511009661 3.590480199 2.119097361 2.079962867 1 7.638635709 -9.454999222 0.798713244 0.771965255 2.979684792 0.361184006 0.66534372 0.473347372 0.445046002 0.712187395 0.118360085 3.51E-10 9.454999222 2.207719537 LAILGIHNEVSK ddPTM_HeLa_CUDC101_4h_R1 2 LAILGIHNEVSK 12 0 P12814-4;P12814-3;P12814;P12814-2;H9KV75;H7C5W8 P12814-4 ACTN1 Alpha-actinin-1 0 0 ; ; 105.46 0.0045105 1571300 3257.1 1979.37 1924.85 1884.8 1662.27 1994.59 1932.11 1821.47 1740.12 2091.44 FALSE FALSE TRUE 2875.307675 2040.352044 2028.913213 1961.670291 1539.647654 1956.546519 2006.63213 2028.818782 1668.391517 2079.000022 1.38302436 0.981410304 0.975908221 0.943564344 0.740571254 0.941099807 0.96519101 0.9758628 0.802497114 1 11.02167406 -7.059616909 8.854382427 1.181148339 0.923798718 0 0.160734693 0.318875701 45.34646179 0.025620927 0.031448791 8.72E-08 7.059616909 -0.257349621 SASQSS(ph)LDKLDQELK ddPTM_HeLa_CUDC101_4h_R1 1 SASQSSLDKLDQELK 15 1 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 SASQS(0.051)S(0.949)LDKLDQELK 195.23 1.74E-15 8828700 1407.3 1149.5 908.26 933.28 1368.1 999.16 941.75 857.46 1005.3 1176.2 TRUE FALSE FALSE 1242.338427 1184.914733 957.3632829 971.3431924 1267.177989 980.1026877 978.073613 955.0697804 963.8611085 1169.20391 1.062550695 1.013437196 0.818816354 0.83077313 1.083795545 0.838264976 0.836529543 0.816854761 0.824373833 1 10.19131084 -6.833971831 7.071045147 1.029696425 0.875853021 0.124525876 0.099618702 0.144365645 11.6737181 0.012490938 0.016482322 1.47E-07 6.833971831 -0.153843404 GEDVPS(ph)EEEEEEENGFEDR ddPTM_HeLa_CUDC101_4h_R1 2 GEDVPSEEEEEEENGFEDR 19 0 Q9ULX3 Q9ULX3 NOB1 RNA-binding protein NOB1 1 0 GEDVPS(1)EEEEEEENGFEDR;GEDVPS(1)EEEEEEENGFEDR ; 204.78 7.57E-18 133689000 27331.2 20950.5 19967.2 18768.5 18513.2 19463.8 16888.4 16337.9 22321.5 25898.6 TRUE FALSE FALSE 24127.47817 21595.96007 21046.68723 19533.96055 17147.51812 19092.56044 17539.79125 18197.7405 21401.39832 25744.55398 0.937187655 0.838855476 0.817519979 0.758760885 0.666063904 0.741615507 0.681301034 0.706857866 0.831298081 1 14.65197966 -6.832903446 0.736693196 0.985624394 0.690860491 0.721787781 0.054659471 0.079034779 0.087164581 0.005776918 0.009172671 1.47E-07 6.832903446 -0.294763903 LALAGIGQPVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LALAGIGQPVKK 12 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 0 1 ; LALAGIGQPVK(1)K;LALAGIGQPVK(1)K 172.47 5.51E-19 0 1459.44 1418.29 1314.04 1143.31 1653.83 1228.55 1213.46 1067.47 1694.58 1760.6 FALSE TRUE FALSE 1288.366656 1461.985834 1385.080977 1189.939124 1531.830256 1205.117456 1260.263559 1188.98647 1624.728695 1750.127873 0.736155726 0.835359437 0.791417015 0.679915532 0.875267619 0.688588231 0.720097987 0.679371198 0.928348563 1 10.77324462 -13.52287874 0.221383674 2.361006861 0.712376721 0.642140329 0.064117343 18.25017994 0.231753985 10.74168422 0.046785707 3.00E-14 13.52287874 -1.648630139 YSPTS(ph)PTYSPTTPK ddPTM_HeLa_CUDC101_4h_R1 1 YSPTSPTYSPTTPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YSPT(0.027)S(0.946)PT(0.027)YSPTTPK 124.42 0.0011959 189930000 7105.8 5962 5640.6 5843.4 6179.8 6002.2 5605.9 6305.3 5508.9 6054.2 TRUE FALSE FALSE 6272.868896 6145.682153 5945.547898 6081.719109 5723.928466 5887.718035 5822.121441 7023.069865 5281.82081 6018.189349 1.042318301 1.021184578 0.987929683 1.010556291 0.951104748 0.978320504 0.967420781 1.166973895 0.877642843 1 12.55511378 -6.832486112 24.91561127 1.020632128 1.004287045 0 0.072785874 188.6930806 66169.46755 0.008899037 0.011695631 1.47E-07 6.832486112 -0.016345083 LALDMEIHAYR ddPTM_HeLa_CUDC101_4h_R1 2 LALDMEIHAYR 11 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 123.62 6.20E-05 1831500 6419.08 5764.82 5504.83 6064.26 5852.92 5692.3 5358.15 5121.42 5678.29 5576.04 FALSE FALSE TRUE 5666.645173 5942.427271 5802.437761 6311.586735 5421.161752 5583.728862 5564.81564 5704.421751 5444.228483 5542.873466 1.022329881 1.072084237 1.046828472 1.138684975 0.978041766 1.007370797 1.003958628 1.029145223 0.982203277 1 12.43641836 -3.879591094 17.59884034 1.02288643 1.852950307 0 0.046034994 2582.913336 361603.8858 0.006170593 3634.564832 0.00013195 3.879591094 0.830063877 ISYIPDEEVS(ph)SPSPPQR ddPTM_HeLa_CUDC101_4h_R1 1 ISYIPDEEVSSPSPPQR 17 0 F8W930;Q9Y6M1-5;Q9Y6M1-6;Q9Y6M1-3;Q9Y6M1-4;Q9Y6M1-1;Q9Y6M1 F8W930 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 1 0 ISYIPDEEVS(0.499)S(0.499)PS(0.002)PPQR 223.14 9.30E-33 19064000 5299.5 4252 3316.5 3888.4 3474 3512.3 3610.3 3344.2 4006.5 4446.2 TRUE FALSE FALSE 4678.300644 4382.99908 3495.800022 4046.985759 3217.729941 3445.308729 3749.55048 3724.89021 3841.350374 4419.753805 1.058498018 0.991683988 0.790949038 0.91565864 0.728033751 0.779525033 0.848361842 0.842782285 0.869132206 1 12.10975029 -6.832354484 4.835708577 1.027330431 0.81750405 0.531052949 0.069691026 0.064486694 2.84885385 0.008080246 0.010788873 1.47E-07 6.832354484 -0.209826381 LALK(ac)TLSK ddPTM_HeLa_CUDC101_4h_R1 1 LALKTLSK 8 1 I3L1Q5;Q2NL82 I3L1Q5 TSR1 Pre-rRNA-processing protein TSR1 homolog 0 1 LALK(1)TLSK 96.331 0.019329 516640 1839.6 795.94 220.06 680.8 351.15 390.99 497.18 134.78 51.659 0 FALSE TRUE FALSE 1623.964877 820.461968 231.9571092 708.5659667 325.2463641 383.5325172 516.3563991 150.1228104 49.52959415 0 0 IPMTPTSSFVSPPPPT(ph)ASPHSNR ddPTM_HeLa_CUDC101_4h_R1 1 IPMTPTSSFVSPPPPTASPHSNR 23 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 IPMTPTSSFVSPPPPT(0.874)AS(0.116)PHS(0.01)NR 147.76 3.10E-07 78029000 1103 943.2 594.44 478.43 725.16 512.92 708.69 584.54 639.27 1149 TRUE FALSE FALSE 973.708012 972.258874 626.5772245 497.9424434 671.6663915 503.1369056 736.0244107 651.0816708 612.91902 1142.165697 0.852510292 0.851241529 0.548586975 0.435963402 0.58806388 0.440511308 0.644411238 0.570041346 0.536628811 1 10.15755625 -6.831906703 3.020660135 0.928439876 0.532762452 0.388767471 0.141376767 0.068601569 1.273483218 0.013151171 0.017974426 1.47E-07 6.831906703 -0.395677424 LANQDEGPEDEEDEVPK ddPTM_HeLa_CUDC101_4h_R1 1 LANQDEGPEDEEDEVPK 17 0 Q6P1N0;Q6P1N0-2 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 0 0 125.47 0.0015747 3478200 2128 1645.1 1478 1510.7 1641.1 1645.3 1611.2 1497 1527.6 1808.2 FALSE FALSE TRUE 1878.559066 1695.783581 1557.905151 1572.312876 1520.039323 1613.918644 1673.344524 1667.412429 1464.631681 1797.444746 1.045127573 0.943441285 0.866733264 0.874748934 0.845666787 0.897896109 0.93095742 0.927657127 0.814841004 1 10.81173171 -7.050555864 3.873112836 1.021015593 0.890425119 0 0.070415783 0.07344104 2.263086149 0.005268794 0.006648149 8.90E-08 7.050555864 -0.130590474 EVAES(ph)PRPR ddPTM_HeLa_CUDC101_4h_R1 2 EVAESPRPR 9 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 EVAES(1)PRPR;EVAES(1)PRPR ; 75.566 0.030181 61325000 7502 5219.8 5959.1 6108.2 6051.3 4764.2 5420.8 5462.6 6259.5 6737.6 TRUE FALSE FALSE 6622.626932 5380.615851 6281.266971 6357.318798 5604.907655 4673.330823 5629.882072 6084.440303 6001.480761 6697.524456 0.988817133 0.803373827 0.937849053 0.949204268 0.836862589 0.697769878 0.840591492 0.90846108 0.896074483 1 12.70941223 -6.831838328 0.622804027 1.003204993 0.820483089 0.200827653 0.078745246 0.455687501 0.369768181 0.019514597 0.03218704 1.47E-07 6.831838328 -0.182721904 LAPDYDALDVANK ddPTM_HeLa_CUDC101_4h_R1 2 LAPDYDALDVANK 13 0 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 RPL23A 60S ribosomal protein L23a 0 0 ; ; 191.53 6.80E-11 12745000 2964.2 2880.7 2645.73 2976.7 2935.7 3432.4 3201.1 3841.4 3232.2 3162.3 FALSE FALSE TRUE 2616.740969 2969.450953 2788.766167 3098.102692 2719.13926 3366.932689 3324.567499 4278.689449 3098.967348 3143.490499 0.832431646 0.944634938 0.887155908 0.985561335 0.865006355 1.071080918 1.057603801 1.361126891 0.985836397 1 11.61815169 -3.156848596 0.814579674 0.919203471 3.491037256 0.811160641 0.061652647 4.044448823 0.501438663 0.011219165 14.32960056 0.000696869 3.156848596 2.571833785 LAPGGHVGR ddPTM_HeLa_CUDC101_4h_R1 2 LAPGGHVGR 9 0 P36578;H3BM89 P36578 RPL4 60S ribosomal protein L4 0 0 ; ; 161.9 5.11E-05 21977000 11488.7 8361.5 10707.9 10849 8288.5 8899.1 9745.5 7463 10353 8279.2 FALSE FALSE TRUE 10142.012 8619.107904 11286.80146 11291.46911 7677.073868 8729.364494 10121.3872 8312.557754 9926.244958 8229.95495 1.232328982 1.047284943 1.371429313 1.371996467 0.932820886 1.060681929 1.229822917 1.010036848 1.2061117 1 13.00666882 -2.73710099 14.54366823 1.129190177 0.625074123 0 0.150055503 0 0 0.020629096 0 0.001831888 2.73710099 -0.504116054 EEKESEDKPEIEDVGS(ph)DEEEEK ddPTM_HeLa_CUDC101_4h_R1 1 EEKESEDKPEIEDVGSDEEEEK 22 2 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 EEKESEDKPEIEDVGS(1)DEEEEK 102.72 7.96E-05 13839000 2968.3 2179.2 2019 1565.9 1669.6 2147.5 1893.7 1909.4 2460.8 2488.2 TRUE FALSE FALSE 2620.360374 2246.338569 2128.153247 1629.76417 1546.436934 2106.540015 1966.740643 2126.758378 2359.364782 2473.400076 1.059416307 0.908198634 0.8604161 0.65891652 0.625227172 0.851677833 0.795156701 0.859852152 0.95389533 1 11.2722799 -6.831796748 2.113586128 1.027269816 0.760224963 0.642097144 0.07806164 0.123790979 1.130500828 0.013335598 0.018552715 1.47E-07 6.831796748 -0.267044854 S(ph)TTPVS(ph)KSNT(ph)PTPR ddPTM_HeLa_CUDC101_4h_R1 1 STTPVSKSNTPTPR 14 1 Q04727-4;Q04727;Q04727-3;H7C4W5;H7C4P7;Q5JSY7;H7C4E4;Q04727-2;H0Y5S0 Q04727-4 TLE4 Transducin-like enhancer protein 4 3 0 S(0.973)T(0.005)T(0.022)PVS(0.854)KS(0.239)NT(0.477)PT(0.43)PR 101.97 0.0096218 4485600 441.58 378.43 198.88 139.07 352.04 287.73 363.35 353.04 296.35 396.95 TRUE FALSE FALSE 389.8186618 390.0889797 209.6320544 144.7418757 326.0707106 282.2420296 377.3645312 393.2286466 284.1343276 394.5889237 0.987910806 0.988595868 0.531266951 0.366816874 0.826355457 0.715281177 0.956348515 0.996552673 0.720076795 1 8.624206649 -6.83131758 12.73061509 0.993800806 0.729246942 0.154397806 0.194480254 0.728472522 131.0279537 0.029845529 0.039230851 1.47E-07 6.83131758 -0.264553864 HCAPSPDRS(ph)PELSSSR ddPTM_HeLa_CUDC101_4h_R1 1 HCAPSPDRSPELSSSR 16 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 HCAPS(0.351)PDRS(0.645)PELS(0.003)S(0.001)S(0.001)R 74.853 0.011296 20265000 2068.3 1779.3 1563.3 1524.6 1992.8 1567.3 1498.8 2160.3 1957 1832.7 TRUE FALSE FALSE 1825.857009 1834.118124 1647.816727 1586.779778 1845.795114 1537.406364 1556.609218 2406.21982 1876.331632 1821.799019 1.002227463 1.006762055 0.904499733 0.870996066 1.013171648 0.843894605 0.854435205 1.320793235 1.029933386 1 10.83114809 -6.83097507 24.99425362 1.001509619 0.95481064 0.016635193 0.130430539 159.0901066 57181.78438 0.019557127 0.025703106 1.48E-07 6.83097507 -0.046698979 GQVSESEDSIT(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 GQVSESEDSITK 12 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 GQVS(0.001)ESEDS(0.017)IT(0.982)K;GQVSES(0.003)EDS(0.267)IT(0.73)K ; 181.75 7.51E-10 35119000 4459.1 3708.8 3657.3 3307 3765.7 3193.31 3197.4 3452.7 3661.5 4230.6 TRUE FALSE FALSE 3936.411058 3823.063732 3855.024701 3441.873754 3487.911813 3132.402932 3320.724789 3845.741412 3510.57142 4205.436203 0.936029194 0.909076621 0.916676538 0.818434423 0.829381697 0.744846142 0.789626719 0.914469089 0.834769867 1 12.03803973 -6.829368098 0.6788018 0.982285568 0.805922624 0.244910476 0.064215961 0.261324566 0.247731554 0.011085754 0.017974115 1.48E-07 6.829368098 -0.176362943 LAQANGWGVMVSHR ddPTM_HeLa_CUDC101_4h_R1 2 LAQANGWGVMVSHR 14 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 134.06 0.00092969 3770400 1941.96 1102.11 759.9 1150 1071.7 1163.95 905.89 1110.35 724.49 635.25 FALSE FALSE TRUE 1714.326393 1136.064703 800.9824926 1196.901971 992.6428261 1141.749593 940.8304808 1236.747756 694.6262156 631.4715047 2.714811959 1.799075167 1.268438063 1.895417231 1.571951891 1.808077775 1.48990172 1.958517125 1.100011973 1 9.302573823 -3.416128512 21.46008217 1.766775236 1.719165351 0 0.484799861 0 0 0.083080696 0 0.000383594 3.416128512 -0.047609885 LAQSNGWGVMVSHR ddPTM_HeLa_CUDC101_4h_R1 2 LAQSNGWGVMVSHR 14 0 P13929-3;P13929-2;P13929 P13929-3 ENO3 Beta-enolase 0 0 ; ; 107.69 0.0038234 32403000 5269.5 3550.3 2475.83 3520 3409.7 3508.1 2859.42 3227.8 2229.18 5504.7 FALSE FALSE TRUE 4651.817198 3659.680535 2609.680859 3663.560815 3158.173224 3441.188837 2969.708787 3595.239705 2137.292257 5471.9578 0.850119348 0.668806425 0.47691904 0.669515546 0.577155991 0.628877079 0.542714125 0.657029867 0.390590048 1 12.41784139 -7.410851576 1.463607173 0.949643059 0.590848696 0 0.186679515 0.092996957 0.387259746 0.012910184 0.014416157 3.88E-08 7.410851576 -0.358794363 MS(ph)ASS(ph)LLEQRPK ddPTM_HeLa_CUDC101_4h_R1 1 MSASSLLEQRPK 12 1 Q9Y5A9;S4R3J8;S4R3V3 Q9Y5A9 YTHDF2 YTH domain-containing family protein 2 2 0 MS(1)AS(0.205)S(0.795)LLEQRPK 83.998 0.0029651 0 1017.8 766.58 669.25 603.75 949.96 741.65 565.12 625.39 744.94 748.14 TRUE FALSE FALSE 898.4950269 790.1974212 705.4316794 628.3735346 879.8833434 727.5042619 586.9168677 696.5818697 714.2332579 743.69003 1.208157956 1.062535989 0.948556053 0.844940108 1.183131826 0.978235868 0.789195557 0.93665619 0.960391062 1 9.538557621 -6.828671371 4.432985649 1.09977979 0.946872578 0.150295206 0.115567934 0.224643778 8.644431162 0.019996651 0.026831876 1.48E-07 6.828671371 -0.152907212 GESDEPAPQVQPES(ph)PETVSPK ddPTM_HeLa_CUDC101_4h_R1 2 GESDEPAPQVQPESPETVSPK 21 0 A0A1B0GTL5 A0A1B0GTL5 1 0 GESDEPAPQVQPES(0.489)PET(0.489)VS(0.022)PK;GESDEPAPQVQPES(0.998)PET(0.002)VSPK ; 138.24 1.15E-07 6001200 15399.4 12803 11018.3 11467.3 11775.5 12131 10533.1 11592.9 13278 13657.5 TRUE FALSE FALSE 13594.30568 13197.44525 11613.98263 11934.98606 10906.84483 11899.62139 10939.3652 12912.58888 12730.67522 13576.26458 1.00132887 0.97209694 0.855462307 0.879106767 0.803375977 0.876501877 0.805771361 0.951114999 0.93771561 1 13.72879897 -6.828479914 3.642517446 1.000147972 0.857372999 0.615132795 0.043870783 0.075054303 2.001560874 0.005707832 0.007736867 1.48E-07 6.828479914 -0.142774973 SWDSS(ph)SPVDRPEPEAAS(ph)PTTR ddPTM_HeLa_CUDC101_4h_R1 1 SWDSSSPVDRPEPEAASPTTR 21 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 0 S(0.03)WDS(0.08)S(0.578)S(0.538)PVDRPEPEAAS(0.638)PT(0.127)T(0.008)R 66.606 0.0089315 38874000 3801.1 2669.4 2782.6 2497.8 2836.2 2413.5 2426.6 1989.8 3571.1 3597.1 TRUE FALSE FALSE 3355.54082 2751.64105 2933.035773 2599.67108 2626.979177 2367.466509 2520.194775 2216.310789 3423.897746 3575.704289 0.938427943 0.769538202 0.820267991 0.727037493 0.734674616 0.662097958 0.704810737 0.619824966 0.957544995 1 11.80401172 -6.827406948 0.558980246 0.996667106 0.652585576 0.911141698 0.037114525 0.127519376 0.085459084 0.009973246 0.016873416 1.49E-07 6.827406948 -0.34408153 S(ph)HTEEDCTEELFDFLHAR ddPTM_HeLa_CUDC101_4h_R1 3 SHTEEDCTEELFDFLHAR 18 0 P07919 P07919 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" 1 0 S(0.5)HT(0.5)EEDCTEELFDFLHAR;S(0.834)HT(0.166)EEDCTEELFDFLHAR;S(0.773)HT(0.227)EEDCTEELFDFLHAR ;; 113.49 0.00020979 7006700 2012.47 1811.75 1927.92 1868.85 2586.11 2166.73 1644.12 1839.88 2249.14 1841.8 TRUE FALSE FALSE 1776.571317 1867.56787 2032.149187 1945.069781 2395.337818 2125.403235 1707.534259 2049.324502 2156.429497 1830.844892 0.970355995 1.020057941 1.109951584 1.062389168 1.30832373 1.160886564 0.932648236 1.119332671 1.177832981 1 10.83829386 -6.82718816 2.701226181 0.985967935 1.117636623 0.013164333 0.106226364 0.246309282 3.675428379 0.014832063 0.020411167 1.49E-07 6.82718816 0.131668688 S(ph)RSPLHPMSEIPR ddPTM_HeLa_CUDC101_4h_R1 1 SRSPLHPMSEIPR 13 1 Q9NVW2-2;Q9NVW2 Q9NVW2-2 RLIM E3 ubiquitin-protein ligase RLIM 1 0 S(0.962)RS(0.038)PLHPMSEIPR 106.79 0.0030969 53706000 2838.3 2035.3 1459 1263.2 1836.1 1691 1418.7 1302.6 2209 2062.4 TRUE FALSE FALSE 2505.598777 2098.005181 1537.877953 1314.718756 1700.654561 1658.746992 1473.419734 1450.882719 2117.944085 2050.132753 1.222164161 1.023350892 0.75013579 0.641284694 0.829533872 0.809092479 0.718694793 0.707701839 1.033076557 1 11.00150162 -6.825552986 4.012797885 1.105456507 0.742604553 0.824341123 0.074050549 0.076644307 2.471407968 0.015538311 0.020973467 1.49E-07 6.825552986 -0.362851953 APEPDLMS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 APEPDLMSPTR 11 0 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 APEPDLMS(0.954)PT(0.046)R 130.15 0.0020462 13286000 1133.1 979.89 975.09 1188.8 1206.1 1440.1 1212.6 933 1059 863.06 TRUE FALSE FALSE 1000.279736 1010.079249 1027.806315 1237.284402 1117.128406 1412.632492 1259.370388 1039.208949 1015.347572 857.9264807 1.165927102 1.177349426 1.198012112 1.442179989 1.302126034 1.646565905 1.467923437 1.211303034 1.183490188 1 9.744710212 -6.825491143 0.585122245 1.040015016 1.452830496 0.515591484 0.124343732 0.345240398 0.25057372 0.032723234 0.054960255 1.49E-07 6.825491143 0.41281548 AS(ph)PLYASYK ddPTM_HeLa_CUDC101_4h_R1 2 ASPLYASYK 9 0 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 AS(1)PLYASYK;AS(0.999)PLYAS(0.001)YK ; 136.48 0.0023365 50834000 9889 6012.6 3894.5 5568.6 5323.9 4814.3 4962.2 4357.4 4642.4 3894.6 TRUE FALSE FALSE 8729.826411 6197.841079 4105.04845 5795.711578 4931.166504 4722.475249 5153.593716 4853.428803 4451.038307 3871.434746 2.254933115 1.600915807 1.060342927 1.497044883 1.273731014 1.21982561 1.331184446 1.253651197 1.149712858 1 11.91865261 -6.824900413 12.26038189 1.609909767 1.283194813 0.065932705 0.332050537 1.418968739 270.8439059 0.076375763 0.10040144 1.50E-07 6.824900413 -0.326714954 S(ph)PLSGIPVR ddPTM_HeLa_CUDC101_4h_R1 4 SPLSGIPVR 9 0 Q5M775-4;Q5M775;J3KSG2 Q5M775-4 SPECC1 Cytospin-B 1 0 S(0.998)PLS(0.002)GIPVR;S(0.993)PLS(0.007)GIPVR;S(0.998)PLS(0.002)GIPVR;S(0.997)PLS(0.003)GIPVR ;;; 92.239 0.025517 166781000 3026.55 3033.38 2697.22 3088.27 4162.13 3643.8 3548.72 2744.76 3217.8 2393.85 TRUE FALSE FALSE 2671.782397 3126.834842 2843.039872 3214.222999 3855.097962 3574.300586 3685.595319 3057.212384 3085.160922 2379.611274 1.12278103 1.31401077 1.194749707 1.350734481 1.620053664 1.5020523 1.548822432 1.284752858 1.296497859 1 11.2165102 -6.824389798 0.699299612 1.031165755 1.497899234 0.480099157 0.132006607 0.216630542 0.216827891 0.024516759 0.039628087 1.50E-07 6.824389798 0.466733478 AESEASLLNVST(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 AESEASLLNVSTPK 14 0 A0A075B754;Q96QE3-2;Q96QE3 A0A075B754 ATAD5 ATPase family AAA domain-containing protein 5 1 0 AESEASLLNVS(0.037)T(0.963)PK 157.56 0.00030864 11593000 1718.1 1794.7 1929.1 1397 1949.1 1625.7 1588.3 644.5 1977.9 1777.4 TRUE FALSE FALSE 1516.706922 1849.99258 2033.392981 1453.975698 1805.318776 1594.692481 1649.561263 717.8672748 1896.370125 1766.827946 0.858434986 1.047070024 1.150872096 0.822929987 1.021785274 0.902573725 0.933628691 0.406302875 1.073319068 1 10.78694584 -4.259830951 5.32160514 0.951320228 0.383644312 0.74512691 0.099350762 0.059876979 6.000770892 0.013206358 0.12348839 5.50E-05 4.259830951 -0.567675916 down S(ph)PVSSLQIR ddPTM_HeLa_CUDC101_4h_R1 2 SPVSSLQIR 9 0 Q5JT35;P55197-1;P55197 Q5JT35 MLLT10 Protein AF-10 1 0 S(0.994)PVS(0.005)S(0.001)LQIR;S(0.999)PVS(0.001)SLQIR ; 131.42 0.0030143 44498000 632 489.76 365.18 377.48 279.68 492.46 496.53 339.34 358.65 492.69 TRUE FALSE FALSE 557.917918 504.8489251 384.9227354 392.875266 259.0485636 483.067146 515.6813284 377.9690939 343.8662952 489.759458 1.139167216 1.030809956 0.785942424 0.802180049 0.528930191 0.986335513 1.052927759 0.771744349 0.702112618 1 8.935929543 -6.824272231 5.608146305 1.066257856 0.825297038 0.041661078 0.177034954 0.15515638 9.476019295 0.02316198 0.030788051 1.50E-07 6.824272231 -0.240960818 SDS(ph)DSSTLSK ddPTM_HeLa_CUDC101_4h_R1 1 SDSDSSTLSK 10 0 H0YBE8;H3BLZ3;Q8IX03;Q8IX03-2;H0YAU4 H0YBE8 WWC1 Protein KIBRA 1 0 S(0.021)DS(0.974)DS(0.005)STLSK 150.09 0.00048214 17629000 3700.6 1223.4 3193 3075.8 1787.1 2067.2 1889.8 804.2 3346.4 4387.5 TRUE FALSE FALSE 3266.821278 1261.091504 3365.623238 3201.244419 1655.269193 2027.771604 1962.690219 895.7468773 3208.459976 4361.402955 0.749029913 0.289148129 0.771683624 0.733994188 0.379526774 0.464935624 0.450013502 0.205380444 0.735648599 1 12.09057657 -6.822624164 0.155670741 1.264313789 1.13E-19 0.478895121 0.174579434 2.390936629 0.257058136 0.776934528 1.106831783 1.50E-07 6.822624164 -1.264313789 LVINGNPITIFQERDPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 LVINGNPITIFQERDPSK 18 1 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 LVINGNPITIFQERDPS(1)K;LVINGNPITIFQERDPS(1)K ; 105.22 0.00047563 99121000 4515 3645.5 3074.7 3605.1 3190.4 3407.9 3139.7 3108 3355.9 3696.5 TRUE FALSE FALSE 3985.758544 3757.813534 3240.927582 3752.131561 2955.050548 3342.899985 3260.799281 3461.802157 3217.568382 3674.513054 1.084703874 1.022669801 0.882001924 1.021123481 0.804201946 0.909753194 0.887409905 0.942111814 0.875644836 1 11.84333736 -6.822601125 5.848346299 1.040463444 0.907428993 0.159022567 0.075342256 0.110401122 7.413372352 0.009119044 0.012107126 1.50E-07 6.822601125 -0.133034451 LASEEPPDDEEALATIR ddPTM_HeLa_CUDC101_4h_R1 4 LASEEPPDDEEALATIR 17 0 Q9UBB4-2;Q9UBB4;B1AHE4 Q9UBB4-2 ATXN10 Ataxin-10 0 0 ;;; ;;; 282.12 1.10E-102 23850600 6307.8 4736.4 5020.8 4189.75 5967.6 4408.81 4994.67 4185.12 4960.19 5426.91 FALSE FALSE TRUE 5568.409246 4882.32287 5292.239635 4360.626115 5527.382037 4324.719295 5187.316095 4661.537144 4755.728869 5394.630498 1.032213281 0.905033787 0.981019856 0.808327116 1.024608087 0.801671087 0.961570231 0.864106846 0.881567119 1 12.39730843 -7.256699563 23.6479109 1.015211829 0.908315663 0.044619133 0.079601006 136.8088408 682567.0173 0.009947718 0.011961569 5.54E-08 7.256699563 -0.106896166 TPQGPVSATVEVS(ph)SPTGFAQSQVLEDVSQAAR ddPTM_HeLa_CUDC101_4h_R1 1 TPQGPVSATVEVSSPTGFAQSQVLEDVSQAAR 32 0 H0YL34;A0A075B7B1;O15061-2;O15061 H0YL34 SYNM Synemin 1 0 TPQGPVSAT(0.001)VEVS(0.816)S(0.136)PT(0.047)GFAQSQVLEDVSQAAR 103.14 1.55E-10 7410400 596.75 571.05 656.78 844.69 669.98 599.85 683.88 625.99 732.37 586.99 TRUE FALSE FALSE 526.7998696 588.6433736 692.2875135 879.1401093 620.5569102 588.4088607 710.2574807 697.2501713 702.1813986 583.4985574 0.902829772 1.008817188 1.186442545 1.506670579 1.063510616 1.008415279 1.21723948 1.194947549 1.203398688 1 9.188585279 -6.822595357 4.174354208 0.954561763 1.197370195 0.1811549 0.147215971 0.152027432 5.333662907 0.021042709 0.028368021 1.50E-07 6.822595357 0.242808433 IVEPEVVGES(ph)DS(ph)EVEGDAWR ddPTM_HeLa_CUDC101_4h_R1 1 IVEPEVVGESDSEVEGDAWR 20 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 IVEPEVVGES(1)DS(1)EVEGDAWR 106.58 0.00065171 2679000 2918.3 2661.9 1881.5 2316.3 2619 2329.7 2466.1 2143 2419.3 2627.1 TRUE FALSE FALSE 2576.221298 2743.909984 1983.219581 2410.768726 2425.801588 2285.264854 2561.218303 2386.950458 2319.57543 2611.473892 0.986500882 1.050713159 0.759425391 0.92314487 0.928901336 0.875086234 0.980755852 0.914024247 0.888224629 1 11.35064857 -6.822319897 25 0.997728862 0.902353408 0.267245509 0.065971396 49.5276375 20337.72452 0.008610625 0.011316582 1.51E-07 6.822319897 -0.095375454 TTGMS(ph)QSTELLPDATDEEVAPPKPPLPGIR ddPTM_HeLa_CUDC101_4h_R1 1 TTGMSQSTELLPDATDEEVAPPKPPLPGIR 30 1 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 T(0.024)T(0.024)GMS(0.478)QS(0.322)T(0.139)ELLPDAT(0.012)DEEVAPPKPPLPGIR 59.67 0.0010414 7962000 693.84 528.17 598.46 445.22 487.31 567.63 400.33 493.34 633.59 664.5 TRUE FALSE FALSE 612.509127 544.4422917 630.8145578 463.377996 451.3621122 556.8034035 415.7708622 549.4998315 607.473152 660.5475244 0.927274881 0.824228797 0.954987392 0.701505916 0.683315122 0.84294223 0.629433685 0.831885385 0.91965094 1 9.367518553 -6.822208664 0.690842353 0.98107607 0.728430774 0.524968276 0.081683178 0.294773668 0.288465376 0.017964038 0.029163885 1.51E-07 6.822208664 -0.252645296 LASTLVHLGEYQAAVDGAR ddPTM_HeLa_CUDC101_4h_R1 1 LASTLVHLGEYQAAVDGAR 19 0 A0A087WVQ6;Q00610-2;Q00610;J3KS13 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 117.78 7.09E-05 7821500 1257.6 859.61 848.31 766.28 1430.8 1412.3 1165.7 878.66 978.63 1597.2 FALSE FALSE TRUE 1110.186034 886.0935652 894.1722046 797.5322105 1325.252735 1385.362731 1210.661439 978.6831027 938.2904572 1587.699783 0.699241787 0.558098939 0.563187206 0.502319279 0.834699827 0.872559627 0.762525417 0.616415719 0.590974734 1 10.63272243 -8.911423341 0.85865546 0.990992791 0.680143877 0 0.168899282 0.396631767 0.557858565 0.07202885 0.026025867 1.23E-09 8.911423341 -0.310848914 GLLPGGTQVLDGTSGFS(ph)PAPK ddPTM_HeLa_CUDC101_4h_R1 2 GLLPGGTQVLDGTSGFSPAPK 21 0 Q96S94;Q96S94-3 Q96S94 CCNL2 Cyclin-L2 1 0 GLLPGGTQVLDGTSGFS(1)PAPK;GLLPGGTQVLDGT(0.003)S(0.012)GFS(0.985)PAPK ; 254.39 5.06E-59 116670000 13103.3 10303.9 9246.7 8550.3 10026 10254.8 9636.7 7010.6 11145.5 11113.4 TRUE FALSE FALSE 11567.35104 10621.35095 9746.604572 8899.018192 9286.401955 10059.20678 10008.39075 7808.658366 10686.07777 11047.297 1.047075229 0.961443414 0.882261477 0.80553806 0.840603991 0.910558191 0.90595833 0.706838819 0.967302479 1 13.4314058 -6.821653691 2.443377753 1.021948606 0.842709563 0.632013837 0.05757568 0.116524247 1.42508106 0.009065453 0.012560799 1.51E-07 6.821653691 -0.179239043 KIPDPDS(ph)DDVSEVDAR ddPTM_HeLa_CUDC101_4h_R1 1 KIPDPDSDDVSEVDAR 16 1 P51532-5;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;P51532;A0A2R8Y4C5;P51532-4;P51532-2;P51532-3;A0A2R8Y6V2;A0A2R8Y6N0;A0A2R8YG32;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y526;A0A2R8YDA1;A0A2R8Y7Y7;A0A2R8YF58;A0A2R8YGP5;A0A2R8Y583;A0A2R8Y7R0 P51532-5 SMARCA4 Transcription activator BRG1 1 0 KIPDPDS(0.877)DDVS(0.123)EVDAR 73.166 0.0032168 0 1196.1 886.09 763.18 663.38 826.83 765.68 882.87 945.32 981.96 819.77 TRUE FALSE FALSE 1055.894971 913.3893826 804.4398193 690.4355038 765.8363982 751.0759297 916.9225916 1052.931408 941.4831932 814.8939716 1.295745223 1.12086899 0.98717115 0.847270354 0.939798826 0.921685466 1.12520478 1.292108476 1.155344408 1 9.670468548 -6.821590199 5.972289773 1.142792581 1.007980035 0.171023604 0.133038975 0.313984046 22.17511831 0.0262775 0.034869705 1.51E-07 6.821590199 -0.134812546 VSS(ph)PVFGATSSIK ddPTM_HeLa_CUDC101_4h_R1 2 VSSPVFGATSSIK 13 0 F6Q6H0;I6L8A6;Q99708-3;Q99708;Q99708-2 F6Q6H0 RBBP8 DNA endonuclease RBBP8 1 0 VS(0.017)S(0.965)PVFGAT(0.005)S(0.008)S(0.005)IK;VS(0.061)S(0.932)PVFGAT(0.006)S(0.002)SIK ; 155.39 0.00011034 109972000 6206.3 5026.7 4143.3 4765.9 5040.1 4190.6 4637.2 5225.6 5479 4824.6 TRUE FALSE FALSE 5478.806922 5181.566669 4367.299331 4960.274002 4668.301864 4110.671287 4816.058357 5820.461181 5253.153301 4795.903065 1.142393174 1.080415221 0.910631277 1.034273198 0.973393707 0.857121429 1.004202606 1.213631949 1.095341843 1 12.22758678 -6.821059362 24.99993251 1.070108164 0.993124189 0.14754844 0.093281334 121.3209144 50871.71231 0.016170327 0.021251979 1.51E-07 6.821059362 -0.076983975 SFEVEEVET(ph)PNS(ph)TPPR ddPTM_HeLa_CUDC101_4h_R1 1 SFEVEEVETPNSTPPR 16 0 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 2 0 SFEVEEVET(0.839)PNS(0.667)T(0.494)PPR 130.66 0.0017655 6374400 2617.1 2318.1 2381 2189.9 2389.1 2408.9 2026 754.72 2623 2250.4 TRUE FALSE FALSE 2310.327505 2389.517913 2509.724062 2279.213588 2212.860853 2362.954246 2104.143499 840.6342741 2514.87883 2237.014521 1.032772691 1.068172733 1.12190781 1.018864011 0.989202722 1.056298126 0.940603415 0.375784004 1.124212117 1 11.12735891 -4.259737221 3.291661133 1.0274284 0.284719875 0.945308687 0.048235586 0.044676279 0.773777681 0.005673611 0.084132413 5.50E-05 4.259737221 -0.742708526 down S(ph)S(ph)EEMIKSELAT(ph)FDLSVQGS(ph)HK ddPTM_HeLa_CUDC101_4h_R1 1 SSEEMIKSELATFDLSVQGSHK 22 1 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-6 SYNRG Synergin gamma 4 0 S(0.93)S(0.582)EEMIKS(0.492)ELAT(0.983)FDLS(0.46)VQGS(0.555)HK 44.816 0.0030535 0 195.71 229.74 0 127.03 199.94 160.99 55.379 125.14 68.616 216.61 TRUE FALSE FALSE 172.7691705 236.8180171 0 132.2108325 185.1908245 157.919384 57.51498658 139.3854318 65.78761944 215.3215941 0.802377352 1.099834032 0 0.614015668 0.860066197 0.733411735 0.267112023 0.647336057 0.305531917 1 7.750349201 -6.821025371 24.99999965 0.918557381 0.538184381 0.123477244 0.308432412 58.91318208 24717.35918 0.038736348 0.050909549 1.51E-07 6.821025371 -0.380373 TALINS(ph)TGEEVAMR ddPTM_HeLa_CUDC101_4h_R1 1 TALINSTGEEVAMR 14 0 P02545;P02545-6;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 T(0.012)ALINS(0.494)T(0.494)GEEVAMR 169.15 5.47E-07 12463000 1090.3 767.75 821.71 622.96 746.03 749.66 623.06 756.41 894.74 937.86 TRUE FALSE FALSE 962.4966868 791.4034675 866.1341281 648.3670015 690.9968532 735.3614845 647.0916329 842.5166569 857.8584385 932.281567 1.032409865 0.848888893 0.929047789 0.695462642 0.741189012 0.788776171 0.694094634 0.903714808 0.920170975 1 9.864621932 -6.820602792 1.398844935 1.015460709 0.764673361 0.558930519 0.076683336 0.1431958 0.562864071 0.011773414 0.016957315 1.51E-07 6.820602792 -0.250787347 S(ph)LGGAVGSVASGAR ddPTM_HeLa_CUDC101_4h_R1 2 SLGGAVGSVASGAR 14 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 S(1)LGGAVGSVASGAR;S(1)LGGAVGSVASGAR ; 118.52 0.0015523 39166000 1181.44 974.23 790.26 873.02 956.12 1103.53 886.57 623.37 792.49 981.96 TRUE FALSE FALSE 1042.953394 1004.244872 832.983846 908.6255291 885.5889325 1082.482004 920.7653019 694.3319211 759.8232268 976.1192582 1.068469232 1.028813706 0.853362782 0.930855038 0.907254851 1.108964908 0.94329181 0.71131874 0.77841229 1 9.930913611 -6.819663453 11.41905943 1.033024232 0.920729703 0 0.123210287 0.662850685 127.9182216 0.015129411 0.019893139 1.51E-07 6.819663453 -0.112294529 LATNAAVTVLR ddPTM_HeLa_CUDC101_4h_R1 2 LATNAAVTVLR 11 0 P50990-3;P50990-2;P50990;H7C2U0 P50990-3 CCT8 T-complex protein 1 subunit theta 0 0 ; ; 187.42 0.0001042 4903800 1190.88 1034.73 894.68 1208.44 1200.44 1231.8 1137.48 1168.21 1196.5 1280.24 FALSE FALSE TRUE 1051.286852 1066.608805 943.0491071 1257.725407 1111.885933 1208.305467 1181.352985 1301.194304 1147.179764 1272.625076 0.82607743 0.838117074 0.741026658 0.988292177 0.873694817 0.949459107 0.928280455 1.022449054 0.901427911 1 10.31359174 -3.626750371 0.966157328 0.899671171 1.295906695 0.229453941 0.07387268 9.073013995 2.728688036 0.013820802 5.044391776 0.000236184 3.626750371 0.396235525 AQENYEGSEEVS(ph)PPQTK ddPTM_HeLa_CUDC101_4h_R1 5 AQENYEGSEEVSPPQTK 17 0 Q93008;Q93008-3 Q93008 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X 1 0 AQENYEGSEEVS(1)PPQTK;AQENYEGSEEVS(0.999)PPQT(0.001)K;AQENYEGSEEVS(1)PPQTK;AQENYEGSEEVS(0.992)PPQT(0.008)K;AQENYEGSEEVS(0.994)PPQT(0.006)K ;;;; 229.93 1.06E-33 37172800 12113.7 8927.4 8219.73 8264.69 9408 8909.3 7963.22 7691.54 8835.37 8368.5 TRUE FALSE FALSE 10693.75045 9202.442612 8664.113467 8601.759781 8713.990583 8739.369946 8270.364063 8567.113823 8471.172309 8318.72379 1.285503729 1.1062325 1.041519551 1.034023968 1.047515316 1.050566189 0.994186641 1.029859151 1.01832595 1 13.0221465 -6.819144515 4.242545252 1.137429513 1.032209695 0.115695173 0.075711059 0.285257488 10.45044904 0.017281147 0.023300232 1.52E-07 6.819144515 -0.105219818 T(ph)SSEDNLYLAVLR ddPTM_HeLa_CUDC101_4h_R1 1 TSSEDNLYLAVLR 13 0 Q15149-4 Q15149-4 PLEC Plectin 1 0 T(0.475)S(0.475)S(0.051)EDNLYLAVLR 168 1.34E-05 441460000 1855.2 1460.2 1180.8 1223.9 1544.1 1323.4 1296.6 1204.5 1493.1 1417.2 TRUE FALSE FALSE 1637.736268 1505.187031 1244.63762 1273.815932 1430.194819 1298.15835 1346.610296 1341.615411 1431.553786 1408.770431 1.162528849 1.06844025 0.883492152 0.904204052 1.015207863 0.921483246 0.95587632 0.952330757 1.016172511 1 10.46022082 -6.817124144 8.823080364 1.078455893 0.940741163 0.55626327 0.052990772 0.19080749 28.00827645 0.010992551 0.014478042 1.52E-07 6.817124144 -0.13771473 LAVEALSSLDGDLAGR ddPTM_HeLa_CUDC101_4h_R1 2 LAVEALSSLDGDLAGR 16 0 P12277;G3V4N7 P12277 CKB Creatine kinase B-type 0 0 ; ; 154.23 0.00066019 17763800 1854.67 1755.02 2046.17 1743.26 2245.92 2038.16 1833.63 2062.44 2112.67 2167.01 FALSE FALSE TRUE 1637.268394 1809.090086 2156.79214 1814.357678 2080.242956 1999.285494 1904.353723 2297.219833 2025.584848 2154.120528 0.760063503 0.839827699 1.001240233 0.842273055 0.965704068 0.928121462 0.884051611 1.0664305 0.940330321 1 11.07288326 -5.74260464 24.42671709 0.886921537 0.953221165 0.116339948 0.082096826 391.6130319 507877.64 0.01512699 0.030209827 1.81E-06 5.74260464 0.066299627 LAVISDSGEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 LAVISDSGEKR 11 1 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 0 1 ; LAVISDSGEK(1)R;LAVISDSGEK(1)R 154.01 0.00012101 7094500 4356.8 4531.4 4487.8 4035 4074.6 4147.2 4104 4496.5 3967.6 4213.1 FALSE TRUE FALSE 3846.102508 4671.007063 4730.424043 4199.564741 3774.024876 4068.09907 4262.292655 5008.363385 3804.053849 4188.040294 0.91835375 1.115320469 1.129507768 1.002751752 0.901143401 0.971361015 1.01772962 1.195872779 0.908313574 1 12.03205961 -7.277100096 24.94553712 0.961444828 1.039367464 0.236890316 0.08372216 1137.222023 1811445.705 0.015092204 0.01728829 5.28E-08 7.277100096 0.077922636 SEPHS(ph)PGIPEIFR ddPTM_HeLa_CUDC101_4h_R1 3 SEPHSPGIPEIFR 13 0 Q9UJJ2;Q8ND82 Q9UJJ2 ZNF280C Zinc finger protein 280C 1 0 SEPHS(1)PGIPEIFR;S(0.001)EPHS(0.999)PGIPEIFR;S(0.005)EPHS(0.995)PGIPEIFR ;; 122.96 0.0012234 20873200 7449 6790.8 6350.6 6693.5 8954.4 8300.2 6431.6 6810.7 7165.4 6164 TRUE FALSE FALSE 6575.839512 7000.016499 6693.932646 6966.489862 8293.851752 8141.887514 6679.668966 7586.002558 6870.039179 6127.336254 1.073197102 1.142424083 1.092470262 1.136952433 1.353581949 1.328780922 1.090142386 1.238058798 1.121211387 1 12.58104431 -6.816356133 0.698647217 1.020849443 1.2414533 0.415702889 0.082653563 0.361028005 0.360568737 0.019237989 0.03128497 1.53E-07 6.816356133 0.220603856 LAVNMVPFPR ddPTM_HeLa_CUDC101_4h_R1 2 LAVNMVPFPR 10 0 Q5JP53;P07437;Q5ST81;A0A075B736;Q5SQY0;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;P68371;Q3ZCM7;Q9BVA1;Q13885;P04350;K7ESM5;Q9BUF5;A0A0B4J269;Q13509;Q13509-2;Q9H4B7 Q5JP53;P68371;Q9BVA1;P04350;A0A0B4J269;Q9H4B7 TUBB;TUBB8;TUBB4B;TUBB2B;TUBB2A;TUBB4A;TUBB6;TUBB3;TUBB1 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-6 chain;Tubulin beta-3 chain;Tubulin beta-1 chain 0 0 ; ; 121.62 0.029948 1378420 724.43 294.052 0 276.74 261.26 56.551 112.28 0 0 0 FALSE FALSE TRUE 639.5134136 303.1113936 0 288.0266534 241.9873703 55.4723839 116.6106772 0 0 0 0 LAVYIDR ddPTM_HeLa_CUDC101_4h_R1 2 LAVYIDR 7 0 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 124.37 0.026002 16057400 6915.4 6354.9 5673.2 5877.9 6458.6 5420.2 5469.5 6194.7 6377.7 4489.6 FALSE FALSE TRUE 6104.787295 6550.686937 5979.910352 6117.626168 5982.161945 5316.818716 5680.460447 6899.879608 6114.808507 4462.89566 1.36789828 1.467810909 1.339917132 1.370775083 1.340421646 1.191338342 1.272819461 1.546054431 1.37014373 1 12.12376436 -9.119879392 0.814013046 0.992306668 1.355740115 0 0.145212866 0.31000699 0.361105866 0.069735131 0.018899861 7.59E-10 9.119879392 0.363433447 LAYINPDLALEEK ddPTM_HeLa_CUDC101_4h_R1 2 LAYINPDLALEEK 13 0 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 0 ; ; 128.57 0.0072546 17718100 5080.8 5013.5 4464.3 4812.3 5777 4680.6 5283.7 5200.4 5367.8 4073.2 FALSE FALSE TRUE 4485.236326 5167.959993 4705.653562 5008.566395 5350.842219 4591.325353 5487.494079 5792.392515 5146.537012 4048.972425 1.107746819 1.276363346 1.16218464 1.236996914 1.321530911 1.133948289 1.355280674 1.430583345 1.271072379 1 11.9833401 -1 0.093019964 0.809666226 2.441543251 0.175807883 0.11113702 47.72782766 0.320243361 0.723037461 9.981384717 0.1 1 1.631877026 DIHLDLPSNNNLVSKDTEEPLPVKESDQTLAALLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 DIHLDLPSNNNLVSKDTEEPLPVKESDQTLAALLSPK 37 2 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 DIHLDLPSNNNLVS(0.001)KDT(0.001)EEPLPVKES(0.023)DQT(0.023)LAALLS(0.951)PK 44.875 0.0098695 26887000 3241.2 3941.7 3314.4 3321.5 6278.5 4017.3 4052.5 5047.4 4652.1 2039 TRUE FALSE FALSE 2861.271449 4063.139105 3493.58649 3456.965127 5815.347564 3940.676696 4208.806282 5621.975614 4460.338469 2026.871937 1.41166859 2.004635335 1.723634545 1.705566624 2.869124317 1.944215924 2.076503308 2.773720189 2.200602015 1 10.98503922 -6.815589444 0.363380817 0.95824201 2.575852503 0.167246345 0.491765597 0.508666209 0.16790582 0.179449541 0.315480492 1.53E-07 6.815589444 1.617610493 APS(ph)PPPTASNSSNSQSEK ddPTM_HeLa_CUDC101_4h_R1 1 APSPPPTASNSSNSQSEK 18 0 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12;Q8N108-19;Q8N108-16;Q8N108-14;Q8N108-18;Q8N108-15 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 APS(1)PPPTASNSSNSQSEK 185.96 3.20E-11 10281000 1487.2 1184.9 1073 1288.3 1104.9 958.11 847.55 526.41 1248.4 1556.1 TRUE FALSE FALSE 1312.87267 1221.405365 1131.009626 1340.842443 1023.393728 939.8356481 880.2402874 586.3343866 1196.940424 1546.844248 0.84874264 0.789611085 0.731172274 0.866824468 0.661601017 0.607582599 0.569055539 0.379051988 0.773795051 1 10.59511222 -4.259574388 0.248891578 0.996358395 3.33E-16 0.74722716 0.084038392 2.189232966 0.108614548 0.041922936 0.675584203 5.50E-05 4.259574388 -0.996358395 down AGLES(ph)GAEPGDGDS(ph)DTTKKK ddPTM_HeLa_CUDC101_4h_R1 1 AGLESGAEPGDGDSDTTKKK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 2 0 AGLES(1)GAEPGDGDS(0.544)DT(0.245)T(0.211)KKK 82.216 0.018715 8160200 4513.5 4412.9 4823.7 5013.4 6167.5 4771 4596 5674 5170.1 4403.1 TRUE FALSE FALSE 3984.434372 4548.856218 5084.483813 5217.868122 5712.535812 4680.001124 4773.26926 6319.905225 4956.98629 4376.910165 0.910330398 1.039284803 1.161660537 1.192135074 1.30515263 1.069247699 1.090556826 1.443919337 1.132530964 1 12.09569706 -6.814806221 2.4269974 0.957782981 1.207428301 0.370683246 0.115647885 0.154460753 1.864786068 0.016667549 0.02315604 1.53E-07 6.814806221 0.24964532 RPPS(ph)PDVIVLSDNEQPS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 3 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 2 0 RPPS(1)PDVIVLS(0.222)DNEQPS(0.641)S(0.137)PR;RPPS(1)PDVIVLS(0.009)DNEQPS(0.557)S(0.434)PR;RPPS(1)PDVIVLS(0.002)DNEQPS(0.807)S(0.192)PR ;; 181.32 2.78E-11 90249600 6269 6122.1 6038.6 6660.2 7513.8 6828.6 6353.8 6227.4 5476.4 5983.1 TRUE FALSE FALSE 5534.157323 6310.714645 6365.064982 6931.831744 6959.521944 6698.355832 6598.868194 6936.302044 5250.660474 5947.512255 0.930499524 1.061067951 1.070206283 1.165501044 1.170156806 1.126244982 1.109517377 1.166252669 0.882833065 1 12.53807062 -6.814581831 1.83076762 0.967795053 1.143444332 0.822856937 0.040497189 0.094039046 0.642386877 0.006180174 0.008731423 1.53E-07 6.814581831 0.175649279 PS(ph)SQPIMSQS(ph)LPK ddPTM_HeLa_CUDC101_4h_R1 1 PSSQPIMSQSLPK 13 0 B7ZM87;O75044;A0A075B7E9 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 2 0 PS(0.502)S(0.502)QPIMS(0.316)QS(0.68)LPK 105.4 0.033316 7971500 1698.8 1351.8 1211.1 1351.7 1165.4 1224.6 1316.1 1156.7 1355.1 1456.1 TRUE FALSE FALSE 1499.669239 1393.447356 1276.575729 1406.828169 1079.430764 1201.242795 1366.862418 1288.374052 1299.242204 1447.439052 1.03608455 0.962698466 0.881954737 0.97194294 0.745752135 0.829909068 0.944331587 0.890105908 0.897614447 1 10.49928689 -6.814315605 1.682311139 1.017518108 0.870256152 0.267070971 0.069631454 0.195072927 1.120914502 0.01030068 0.014643226 1.53E-07 6.814315605 -0.147261956 LCDFGSASHVADNDITPYLVSR ddPTM_HeLa_CUDC101_4h_R1 1 LCDFGSASHVADNDITPYLVSR 22 0 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 0 84.159 0.00071013 5088800 949.6 692.85 728.13 541.6 965.55 977.46 727.22 767.45 913.35 297.49 FALSE FALSE TRUE 838.2893275 714.1958873 767.4949103 563.688789 894.3233001 958.8165791 755.269119 854.8134059 875.7013264 295.7205162 2.834735101 2.415104289 2.595338734 1.906153811 3.024217973 3.242306591 2.55399635 2.89061245 2.961246441 1 8.208090527 -9.495322429 0.560826543 0.554019374 2.726284877 0 0.707092527 0.586503364 0.225470921 0.701431187 0.08411582 3.20E-10 9.495322429 2.172265503 MNGVMFPGNSPS(ph)YTER ddPTM_HeLa_CUDC101_4h_R1 1 MNGVMFPGNSPSYTER 16 0 Q9NY27-2;Q9NY27-3;Q9NY27 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 1 0 MNGVMFPGNS(0.109)PS(0.877)YT(0.014)ER 153.48 0.00013053 61744000 3422 3106.2 3523.1 3681.8 4129.7 3320 3763.6 3083.6 4123.3 3225.1 TRUE FALSE FALSE 3020.878347 3201.89834 3713.569443 3831.959718 3825.060259 3256.676531 3908.763313 3434.62456 3953.335829 3205.916962 0.942282156 0.998746499 1.158348606 1.195277284 1.193125182 1.015833089 1.21923411 1.071339215 1.233137313 1 11.64652134 -6.814088638 5.092092046 0.972897536 1.144859775 0.035532987 0.101136803 0.08608575 4.727460322 0.00922502 0.012342459 1.53E-07 6.814088638 0.171962238 RSHRS(ph)RSQSS(ph)S(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 RSHRSRSQSSSR 12 3 Q15695 Q15695 ZRSR1 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 3 0 RS(0.001)HRS(0.683)RS(0.227)QS(0.159)S(0.933)S(0.997)R 68.751 0.002547 0 338.06 299.34 195.14 117.34 246.17 280.09 215.4 310.92 136.08 337.12 TRUE FALSE FALSE 298.4331193 308.5623106 205.6898587 122.1256324 228.0105295 274.7477499 223.7080502 346.313876 130.4707248 335.1147952 0.890539969 0.920766003 0.613789249 0.364429247 0.680395294 0.819861593 0.667556471 1.03341864 0.389331437 1 8.388511572 -6.813993003 7.24056638 0.945451041 0.685197778 0 0.23737129 0.177478094 20.04236748 0.0264574 0.034968483 1.53E-07 6.813993003 -0.260253263 QQTEKPES(ph)EDEWERTER ddPTM_HeLa_CUDC101_4h_R1 2 QQTEKPESEDEWERTER 17 2 A2AB15;A0A140T947;O60231 A2AB15 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 1 0 QQTEKPES(0.999)EDEWERTER;QQT(0.004)EKPES(0.994)EDEWERT(0.002)ER ; 66.738 0.026694 79136000 3374 4066.7 4632.5 4914.4 6065.9 4698.8 4895.6 6062.2 4214.3 3733.4 TRUE FALSE FALSE 2978.504835 4191.990207 4882.946963 5114.830474 5618.430642 4609.178219 5084.424932 6752.296344 4040.58477 3711.193571 0.80257329 1.129553101 1.315734916 1.378217109 1.513914738 1.241966535 1.370024181 1.819440623 1.088756136 1 11.85766754 -6.813906283 1.956924744 0.907030259 1.446746646 0.649597012 0.159911192 0.12652294 0.989914285 0.026424525 0.037179752 1.53E-07 6.813906283 0.539716387 CIFMSETQSS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 3 CIFMSETQSSPTK 13 0 B4DGW0;A0A087WUY7;O75928-2;O75928 B4DGW0 PIAS2 E3 SUMO-protein ligase PIAS2 1 0 CIFMSETQS(0.009)S(0.987)PT(0.004)K;CIFMS(0.001)ET(0.005)QS(0.043)S(0.944)PT(0.007)K;CIFMSETQS(0.377)S(0.621)PT(0.002)K ;; 136.38 0.00087996 26668800 9808.7 7638.1 7711.5 7559.4 7665.2 8131.8 7481.7 6352.1 9160.2 8702.7 TRUE FALSE FALSE 8658.939055 7873.420808 8128.407016 7867.705007 7099.753467 7976.699464 7770.271675 7075.197388 8782.612679 8650.935953 1.000925114 0.910123581 0.939598566 0.909462866 0.820691947 0.922062018 0.898200116 0.817853401 1.015221096 1 13.07864051 -6.812763566 0.940334349 1.002914664 0.871100878 0.71443811 0.035150489 0.190526585 0.335628521 0.006831709 0.010444735 1.54E-07 6.812763566 -0.131813787 ESEDKPEIEDVGS(ph)DEEEEK ddPTM_HeLa_CUDC101_4h_R1 3 ESEDKPEIEDVGSDEEEEK 19 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK;ESEDKPEIEDVGS(1)DEEEEK ;; 183.75 1.46E-11 808002700 17390.2 11747.6 11120.5 11468.3 9137.89 11260.5 9666.64 7793.01 14131.7 15501.1 TRUE FALSE FALSE 15351.74712 12109.52963 11721.70787 11936.02684 8463.80606 11045.72472 10039.48554 8680.134758 13549.18534 15408.89877 0.996290997 0.785878979 0.760710291 0.774619071 0.549280399 0.716840632 0.651538159 0.563319604 0.879309128 1 13.91147614 -6.810168263 0.941304767 1.006209061 0.632775181 0.759511967 0.073503703 0.118322695 0.208877493 0.012015471 0.018394923 1.55E-07 6.810168263 -0.37343388 CEY(ph)MLNAIPKR ddPTM_HeLa_CUDC101_4h_R1 1 CEYMLNAIPKR 11 1 E7EWD9;A0A2R8Y491;O95718;O95718-2;O95718-1 E7EWD9 ESRRB Steroid hormone receptor ERR2 1 0 CEY(1)MLNAIPKR 46.796 0.037376 76172000 5866 4512.1 3788.5 3905.7 4887.6 4166.5 4037.1 3783.2 4434.8 4248.6 TRUE FALSE FALSE 5178.396372 4651.112453 3993.31777 4064.991328 4527.051485 4087.030954 4192.812299 4213.864196 4251.995667 4223.329138 1.226140848 1.101290546 0.945537901 0.962508769 1.071915386 0.967727312 0.992774222 0.997758891 1.006787662 1 12.04416497 -6.808187223 9.543056392 1.109458501 0.991384845 0.285204703 0.067987142 0.351301316 68.57694176 0.014362584 0.01891651 1.56E-07 6.808187223 -0.118073656 YRPAS(ph)ASVSALIGGR ddPTM_HeLa_CUDC101_4h_R1 1 YRPASASVSALIGGR 15 1 P46108-2 P46108-2 CRK Adapter molecule crk 1 0 YRPAS(0.907)AS(0.08)VS(0.013)ALIGGR 101.04 0.026989 23710000 912.94 700.66 1071.2 753.15 983.23 987.35 1002.7 719.54 719.34 753.01 TRUE FALSE FALSE 805.9265571 722.2465041 1129.112312 783.8667124 910.6990818 968.5179438 1041.374475 801.4495251 689.6885007 748.531063 1.076677505 0.964885146 1.508437482 1.047206657 1.216648349 1.293891452 1.391224127 1.070696414 0.921389285 1 9.547918377 -6.806999851 24.99998445 1.031871203 1.25151414 0.467469708 0.135164254 88.06819274 48324.53335 0.019505284 0.025635022 1.56E-07 6.806999851 0.219642937 HYGITS(ph)PISLAAPK ddPTM_HeLa_CUDC101_4h_R1 1 HYGITSPISLAAPK 14 0 G3XAH6;P51003;G3V457;G3V3I9;A0A0C4DGK1;P51003-2 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 0 HYGIT(0.027)S(0.941)PIS(0.032)LAAPK 141.73 0.00047304 28696000 5710.5 4708.3 4072.7 4249.4 5181.2 4475.6 4396.5 3896.7 5435.9 4744.1 TRUE FALSE FALSE 5041.123847 4853.357142 4292.882481 4422.708899 4798.993198 4390.235387 4566.074478 4340.284577 5211.829901 4715.881882 1.068967369 1.029151549 0.910303224 0.93783284 1.017623706 0.930946851 0.968233427 0.920354811 1.105165488 1 12.20331187 -6.806398425 11.68586608 1.033246775 0.95049027 0.61130027 0.039315584 0.41969885 108.0932278 0.005961616 0.007841808 1.56E-07 6.806398425 -0.082756506 SSGSSSSGLGTVSNS(ph)PASQR ddPTM_HeLa_CUDC101_4h_R1 4 SSGSSSSGLGTVSNSPASQR 20 0 Q9UPP1-4;Q9UPP1-3;Q9UPP1-2;Q9UPP1;H0Y3N9;Q9UPP1-5;H0Y589 Q9UPP1-4 PHF8 Histone lysine demethylase PHF8 1 0 SSGSSSSGLGTVSNS(0.996)PAS(0.004)QR;SSGSSSSGLGTVSNS(0.969)PAS(0.031)QR;SSGSSSSGLGTVSNS(0.992)PAS(0.007)QR;SSGSSSSGLGTVSNS(0.999)PAS(0.001)QR ;;; 377.86 4.11E-277 59334000 4501.57 5111.74 5521.79 5123.26 6017.1 6121.94 6038.77 3647.38 6623.87 6654.69 TRUE FALSE FALSE 3973.902789 5269.22665 5820.31467 5332.208687 5573.230521 6005.174194 6271.687382 4062.582996 6350.831275 6615.107608 0.60073139 0.796544359 0.87985185 0.806065298 0.842500357 0.907796902 0.948085466 0.614137099 0.960049579 1 12.69154891 -6.805944945 24.45371335 0.805069938 0.840898314 0 0.131894578 620.453305 340907.1128 0.026955992 0.035427232 1.56E-07 6.805944945 0.035828376 DEVVS(ph)PLPSALQGPSGSLSAPPAASVISAPPSSSSR ddPTM_HeLa_CUDC101_4h_R1 1 DEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSSR 36 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 DEVVS(0.998)PLPS(0.002)ALQGPSGSLSAPPAASVISAPPSSSSR 102.46 3.17E-13 9221400 2786.6 2080.6 1390.7 1708.4 1868.9 1916.1 1713 1738.2 2760.5 1864.1 TRUE FALSE FALSE 2459.958972 2144.70082 1465.885449 1778.075936 1731.03497 1879.553585 1779.070984 1936.069662 2646.711022 1853.01225 1.327545985 1.15741319 0.791082438 0.959559731 0.934173517 1.014323345 0.96009672 1.044822916 1.428328939 1 10.8556567 -6.805909497 21.43647154 1.159202404 0.953651581 0.501285594 0.128450422 25.92036228 12494.40929 0.021790908 0.028639225 1.56E-07 6.805909497 -0.205550823 (ac)ATAATS(ph)PALKR ddPTM_HeLa_CUDC101_4h_R1 2 ATAATSPALKR 11 1 A0A087WVI0;Q8WTW3 A0A087WVI0 COG1 Conserved oligomeric Golgi complex subunit 1 1 0 AT(0.276)AAT(0.094)S(0.63)PALKR;AT(0.13)AAT(0.009)S(0.861)PALKR ; 61.815 0.0083116 35823900 7545.8 6270.2 5635.5 6029.2 6077.8 5400 5495.5 6387.3 6270.5 6515.3 TRUE FALSE FALSE 6661.292763 6463.37743 5940.172176 6275.096836 5629.452803 5297.003997 5707.463276 7114.404414 6012.027336 6476.546706 1.028525396 0.997966621 0.917182018 0.968895481 0.86920593 0.817874747 0.881251002 1.098487317 0.92827669 1 12.66100906 -6.805755907 3.858122737 1.01352205 0.917364301 0.108704033 0.075306244 0.212616937 6.61809927 0.011297408 0.015374672 1.56E-07 6.805755907 -0.096157749 SLTVSDDAESS(ph)EPER ddPTM_HeLa_CUDC101_4h_R1 4 SLTVSDDAESSEPER 15 0 Q8NFC6;H0Y9Y2 Q8NFC6;H0Y9Y2 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 SLTVSDDAES(0.018)S(0.982)EPER;SLTVSDDAES(0.001)S(0.999)EPER;SLTVSDDAES(0.035)S(0.965)EPER;SLTVSDDAES(0.027)S(0.973)EPER ;;; 302.85 4.25E-123 93916100 9268.1 7879.5 6529.2 6633.5 7868.3 8104.5 7392.3 7209 7974.9 8057.4 TRUE FALSE FALSE 8181.707368 8122.258055 6882.188302 6904.042802 7287.871185 7949.920166 7677.423487 8029.64342 7646.171247 8009.474226 1.021503676 1.014081302 0.85925594 0.861984521 0.909906316 0.992564548 0.958542755 1.002518167 0.954640845 1 12.96749183 -6.805445984 24.9976967 1.010732802 0.930786995 0.299385635 0.048381213 102.7058852 58341.11459 0.007847535 0.010313717 1.57E-07 6.805445984 -0.079945807 LCYVALDFEQEMATAASSSSLEK ddPTM_HeLa_CUDC101_4h_R1 1 LCYVALDFEQEMATAASSSSLEK 23 0 P60709;A0A2R8Y793;Q6S8J3;A0A2R8YEA7;P63261;I3L4N8 P60709;P63261 ACTB;POTEE;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 83.359 0.00020969 0 286.34 150.3 140.36 53.746 246.68 220.49 177.22 292.24 315.72 172.84 FALSE FALSE TRUE 252.7756593 154.9305649 147.9482862 55.93799419 228.4829079 216.2845206 184.0554348 325.5074203 302.705888 171.81194 1.471234533 0.901745041 0.861105964 0.325576873 1.329843012 1.258844529 1.071261024 1.894556457 1.761844305 1 7.424686489 -4.25901307 24.23544138 1.123407765 1.894556868 0.288950123 0.369047805 140.9253885 1407506.793 0.047902195 0.430808172 5.51E-05 4.25901307 0.771149103 KLDPEEEDDS(ph)FNNYEVQSEAK ddPTM_HeLa_CUDC101_4h_R1 2 KLDPEEEDDSFNNYEVQSEAK 21 1 A0A087WWW8;Q9Y6J0-2;Q9Y6J0 A0A087WWW8 CABIN1 Calcineurin-binding protein cabin-1 1 0 KLDPEEEDDS(0.97)FNNY(0.03)EVQSEAK;KLDPEEEDDS(0.957)FNNY(0.043)EVQSEAK ; 97.69 0.00016673 20543900 7330.3 5915.4 5597.8 4873.6 6391.1 6557.6 5932.6 4919.9 5410 5978.6 TRUE FALSE FALSE 6471.053346 6097.646463 5900.434 5072.366473 5919.641286 6432.524706 6161.422369 5479.961529 5186.99751 5943.039021 1.088845845 1.026014879 0.992831105 0.853497084 0.996063002 1.082362859 1.036746073 0.922080691 0.87278537 1 12.53698514 -6.803340492 4.213194823 1.042465082 0.982411005 0 0.081403544 0.317712766 12.08710235 0.011076481 0.015017125 1.57E-07 6.803340492 -0.060054077 LDALVAEEHLTVDAR ddPTM_HeLa_CUDC101_4h_R1 1 LDALVAEEHLTVDAR 15 0 A6NFX8;Q9UKK9 A6NFX8 NUDT5 ADP-sugar pyrophosphatase 0 0 157.23 8.14E-05 2878000 2133.4 1696.2 1571.3 1383.9 2297.3 2052.5 1932 1893.8 2112.1 2324 FALSE FALSE TRUE 1883.326086 1748.457912 1656.249231 1440.341424 2127.832756 2013.351982 2006.517887 2109.382537 2025.038344 2310.176745 0.815230302 0.756850278 0.716936154 0.623476722 0.921069248 0.871514263 0.868556006 0.913082751 0.876572907 1 11.17378752 -8.952696419 0.878815362 0.994694497 0.808988365 0.185687414 0.094677795 0.481701977 0.705644841 0.05339533 0.01884211 1.12E-09 8.952696419 -0.185706132 SESVVS(ph)GLDSPAKTSSMEK ddPTM_HeLa_CUDC101_4h_R1 1 SESVVSGLDSPAKTSSMEK 19 1 H7BYJ3;O14578;O14578-4;O14578-2 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 S(0.001)ES(0.002)VVS(0.806)GLDS(0.189)PAKT(0.002)S(0.001)S(0.001)MEK 60.272 0.018562 6320100 1295.7 1443.6 1364.3 1318.8 2289.2 1581.2 1562.7 1642.2 1533.2 1054.1 TRUE FALSE FALSE 1143.82001 1488.075605 1438.058185 1372.586364 2120.330277 1551.041244 1622.973862 1829.14141 1470.000847 1047.830166 1.091608208 1.420149613 1.372415331 1.309932094 2.023543838 1.480241068 1.548890187 1.745646832 1.402899911 1 10.03318919 -6.803216091 0.771250443 1.017729151 1.666285734 0.433719645 0.210926128 0.229020249 0.27506255 0.037044739 0.05942018 1.57E-07 6.803216091 0.648556583 LDDFLDLNHK ddPTM_HeLa_CUDC101_4h_R1 2 LDDFLDLNHK 10 0 Q8WVY7 Q8WVY7 UBLCP1 Ubiquitin-like domain-containing CTD phosphatase 1 0 0 ; ; 132.32 0.0018843 10973600 11636.9 10949 9740.8 10323.8 11393.8 10936.4 9904.9 9191.2 10847.5 11598.4 FALSE FALSE TRUE 10272.84022 11286.32571 10267.41711 10744.84919 10553.30207 10727.80639 10286.93531 10237.48906 10400.36146 11529.4122 0.891011618 0.978915969 0.890541246 0.93195117 0.91533739 0.930472968 0.892234151 0.887945446 0.902072133 1 13.49303134 -9.432711037 0.910245484 1.005724422 0.9140804 0 0.040151755 0.36918869 0.489084192 0.024514532 0.004793454 3.69E-10 9.432711037 -0.091644022 FVS(ph)EGDGGR ddPTM_HeLa_CUDC101_4h_R1 4 FVSEGDGGR 9 0 Q53EL6;Q53EL6-2 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR;FVS(1)EGDGGR ;;; 117.02 0.0067407 308781500 11810.2 10662.9 11385.1 12005.2 12204.7 10449.3 11329.7 12637.9 10666.5 11342.4 TRUE FALSE FALSE 10425.82626 10991.41131 12000.61294 12494.82395 11304.3836 10249.99701 11766.69032 14076.54745 10226.82236 11274.9349 0.924690595 0.974853638 1.064362061 1.108194775 1.002611873 0.909095893 1.043614924 1.248481484 0.907040479 1 13.46083148 -6.802999221 6.097405088 0.963905971 1.054243548 0.288139661 0.084102526 0.230488261 21.47565186 0.013756947 0.018328582 1.57E-07 6.802999221 0.090337577 WLDES(ph)DAEMELR ddPTM_HeLa_CUDC101_4h_R1 6 WLDESDAEMELR 12 0 H3BPZ1;H3BS72;Q9P035 H3BPZ1 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 1 0 WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR ;;;;; 202.61 1.28E-16 48938900 16203.7 11320.9 9368.93 10847.6 7882.13 8581.44 9313 8091.9 8845.12 13604.7 TRUE FALSE FALSE 14304.32685 11669.68351 9875.442695 11290.01202 7300.680973 8417.76333 9672.20553 9013.049187 8480.52041 13523.77864 1.057716725 0.862901103 0.730228064 0.834826739 0.539840319 0.622441668 0.71519993 0.666459384 0.627082167 1 13.72321069 -6.802937912 1.359287611 1.029384513 0.661106078 0.181373359 0.145555569 0.109989714 0.408218646 0.013046562 0.019005717 1.57E-07 6.802937912 -0.368278436 LDDIEEFENIRK ddPTM_HeLa_CUDC101_4h_R1 1 LDDIEEFENIRK 12 1 Q8NHZ8 Q8NHZ8 CDC26 Anaphase-promoting complex subunit CDC26 0 0 140.63 0.0012852 3648500 1189.2 958.2 1243.6 1182.1 1536.8 1189 1147.3 1064.8 1491.6 1334.9 FALSE FALSE TRUE 1049.803779 987.7210063 1310.832778 1230.311147 1423.433326 1166.321806 1191.551745 1186.012528 1430.115617 1326.959955 0.791134483 0.744348767 0.987846523 0.927165241 1.072702548 0.87894273 0.897956069 0.893781702 1.077738338 1 10.37390912 S(ph)PPAVVEEK ddPTM_HeLa_CUDC101_4h_R1 1 SPPAVVEEK 9 0 Q5T7W0-2;Q5T7W0-4;Q5T7W0 Q5T7W0-2 ZNF618 Zinc finger protein 618 1 0 S(1)PPAVVEEK 83.862 0.037328 16007000 1116.6 1103.3 1136.7 1245.8 1669.2 1353.7 1220.5 841.28 1032.1 1066.8 TRUE FALSE FALSE 985.7138407 1137.291365 1198.15344 1296.609109 1546.066442 1327.880428 1267.575094 937.0479146 989.5564012 1060.454626 0.929520053 1.072456414 1.12984885 1.222691737 1.457927952 1.252180334 1.195312899 0.883628485 0.933143556 1 10.05046718 -6.802512622 2.030722619 0.967390875 1.215424283 0.38744426 0.13332606 0.235341713 1.986300265 0.02298156 0.032400262 1.58E-07 6.802512622 0.248033408 IEDVGS(ph)DEEDDSGK ddPTM_HeLa_CUDC101_4h_R1 10 IEDVGSDEEDDSGK 14 0 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 0 IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(1)DEEDDSGK;IEDVGS(0.999)DEEDDS(0.001)GK;IEDVGS(0.985)DEEDDS(0.015)GK;IEDVGS(1)DEEDDSGK;IEDVGS(0.961)DEEDDS(0.039)GK;IEDVGS(0.971)DEEDDS(0.029)GK;IEDVGS(0.998)DEEDDS(0.002)GK ;;;;;;;;; 260.97 4.57E-70 2341387200 39233.77 27845.02 25564.29 26723.46 22228.47 26186.07 23187.37 19220.24 31582.35 34929.77 TRUE FALSE FALSE 34634.84696 28702.89206 26946.37285 27813.35821 20588.72005 25686.61434 24081.71463 21408.19443 30280.51217 34722.00617 0.997489799 0.826648435 0.776060367 0.801029701 0.592958827 0.739779096 0.693557697 0.616559836 0.872084177 1 15.08356269 -6.802335553 0.996905751 1.005066719 0.673415528 0.739314125 0.06778392 0.108773325 0.215203766 0.010040855 0.015281794 1.58E-07 6.802335553 -0.331651191 LDEDEDEDDADLSK ddPTM_HeLa_CUDC101_4h_R1 2 LDEDEDEDDADLSK 14 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 0 0 ; ; 234.79 1.15E-42 39269000 5512.9 4268.3 4194.2 4274.5 4050.6 4078.2 3756.5 3660.1 4877.5 6565.3 FALSE FALSE TRUE 4866.686219 4399.801264 4420.951139 4448.832586 3751.795308 4000.41513 3901.389463 4076.750989 4676.447386 6526.249304 0.745709517 0.674169965 0.677410705 0.681682905 0.574877718 0.612973079 0.597799637 0.624669822 0.716559722 1 12.67203838 -8.606707756 0.326648888 1.091502556 0.581159941 0.375990736 0.090873966 0.232546114 0.048345657 0.045864181 0.014415251 2.47E-09 8.606707756 -0.510342615 PIS(ph)PSPSAILER ddPTM_HeLa_CUDC101_4h_R1 2 PISPSPSAILER 12 0 Q5T5P2;Q5T5P2-2;Q5T5P2-7;Q5T5P2-3;Q5T5P2-9;Q5T5P2-10;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P1;Q5T5P0 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 PIS(0.701)PS(0.296)PS(0.003)AILER;PIS(0.751)PS(0.195)PS(0.053)AILER ; 108.68 0.0060838 26517000 4054 3151.2 2675.5 2633.43 2932 2246.13 2340.8 2019.72 2842.2 4116.5 TRUE FALSE FALSE 3578.796265 3248.284737 2820.145623 2740.832658 2715.712201 2203.288813 2431.08544 2249.636761 2725.043313 4092.014875 0.874580463 0.793810589 0.689182642 0.669800268 0.663661371 0.538436169 0.594104742 0.549762606 0.665941693 1 11.99859567 -6.802253029 0.458099693 0.992150375 0.529886437 0.438165163 0.104002656 0.109401373 0.052006339 0.010940649 0.0194649 1.58E-07 6.802253029 -0.462263938 LDEEEEDNEGGEWER ddPTM_HeLa_CUDC101_4h_R1 1 LDEEEEDNEGGEWER 15 0 Q99613-2;Q99613 Q99613-2 EIF3C Eukaryotic translation initiation factor 3 subunit C 0 0 159.12 0.00040511 38256000 1124.7 886.85 992.24 817.78 983.45 827.46 709.65 983.84 1010.1 1018.5 FALSE FALSE TRUE 992.8643709 914.1727973 1045.883496 851.1326031 910.9028528 811.6775791 737.0214382 1095.836369 968.4632505 1012.441917 0.980663043 0.902938512 1.033030615 0.840673019 0.899708751 0.801702859 0.727964169 1.082369616 0.956561788 1 9.983623428 -6.253526554 24.81115238 0.985517743 0.860368386 0.240104323 0.090742051 476.0991719 1492837.004 0.012528387 0.020532331 5.58E-07 6.253526554 -0.125149357 LDEELEDAEK ddPTM_HeLa_CUDC101_4h_R1 3 LDEELEDAEK 10 0 Q15008;Q15008-4;C9J0E9;Q15008-3;Q15008-2;C9J7B7 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 0 ;; ;; 159.4 0.00039393 24056300 7045.3 5239.2 5806.3 5474.9 5456.6 6138.8 5713.8 5126.5 6295.4 7493 FALSE FALSE TRUE 6219.460614 5400.613542 6120.206141 5698.190087 5054.077489 6021.712618 5934.18318 5710.080038 6035.900947 7448.431303 0.835002749 0.725067242 0.821677195 0.765018815 0.678542539 0.808453804 0.796702411 0.766615117 0.810358679 1 12.8627209 -8.468494363 0.576843799 1.003052328 0.761703079 0.235793132 0.070253642 0.249487264 0.172429804 0.028120367 0.011670674 3.40E-09 8.468494363 -0.241349249 LDEIYVAGLVAHSDLDER ddPTM_HeLa_CUDC101_4h_R1 2 LDEIYVAGLVAHSDLDER 18 0 O60506-2;O60506;O60506-4;O60506-3;F6UXX1 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 0 ; ; 165.66 8.37E-06 17815300 5452.8 4075 4254.2 3902.1 4444.7 3674.6 3775.7 3339.2 4383 5874.1 FALSE FALSE TRUE 4813.63105 4200.54592 4484.19492 4061.244504 4116.823336 3604.513127 3921.330014 3719.32103 4202.330885 5839.160592 0.824370382 0.71937496 0.767951977 0.695518549 0.705036841 0.617299879 0.671557145 0.636961593 0.719680649 1 12.51154527 -7.845288817 0.295146507 1.056689399 0.605448707 0.252146554 0.090582744 0.20569741 0.055349897 0.036890979 0.024508624 1.43E-08 7.845288817 -0.451240692 LDEKENLSAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 LDEKENLSAKR 11 2 U3KQ93;Q9UBT2-2;Q9UBT2 U3KQ93 UBA2 SUMO-activating enzyme subunit 2 0 1 LDEKENLSAK(1)R 109.39 0.0082772 8431900 4012 4025.6 4212.8 4899.1 5116.9 5073.7 4317.1 5507.2 3777.9 3357.1 FALSE TRUE FALSE 3541.719442 4149.623964 4440.556711 5098.906474 4739.436481 4976.927626 4483.611993 6134.117387 3622.173363 3337.13182 1.061306425 1.243470198 1.330650676 1.527930795 1.420212547 1.491378793 1.343552558 1.83814057 1.085415128 1 11.70439296 -6.800220188 0.907305268 1.013049276 1.531502127 0.741557083 0.122430008 0.164918365 0.270911719 0.022805605 0.035377338 1.58E-07 6.800220188 0.518452851 LDEYLNSPLPDEIDENSMEDIK ddPTM_HeLa_CUDC101_4h_R1 3 LDEYLNSPLPDEIDENSMEDIK 22 0 Q9Y696 Q9Y696 CLIC4 Chloride intracellular channel protein 4 0 0 ;; ;; 196.98 5.80E-19 18935100 8105 7675.3 7635.2 6894.91 8465.4 7275.2 7111.82 6440.84 8735.7 8783.3 FALSE FALSE TRUE 7154.944186 7911.766896 8047.982007 7176.114232 7840.924307 7136.437681 7386.12528 7174.039191 8375.610749 8731.056541 0.819482058 0.906163745 0.921764963 0.821906742 0.898049883 0.81736244 0.845960079 0.821669079 0.959289487 1 13.09194053 -9.41020626 0.904526156 1.008977627 0.855441847 0.607836431 0.039082866 0.32159237 0.424459144 0.035377757 0.007118572 3.89E-10 9.41020626 -0.15353578 EAEEGEDDRDS(ph)ANGEDDS ddPTM_HeLa_CUDC101_4h_R1 4 EAEEGEDDRDSANGEDDS 18 1 P07910-2;P07910;G3V4C1;P07910-3;G3V2D6;G3V2Q1;P07910-4 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 EAEEGEDDRDS(1)ANGEDDS;EAEEGEDDRDS(0.996)ANGEDDS(0.004);EAEEGEDDRDS(0.953)ANGEDDS(0.047);EAEEGEDDRDS(0.567)ANGEDDS(0.433) ;;; 147.84 0.00036551 434806500 12316.8 9477.1 6824.26 8725.5 7332.39 8039.6 7819.2 6069.87 10738.3 9201 TRUE FALSE FALSE 10873.04338 9769.078218 7193.200138 9081.363605 6791.494198 7886.258025 8120.789163 6760.839466 10295.66273 9146.272043 1.188795099 1.068093992 0.786462518 0.99290329 0.742542335 0.862237422 0.887879688 0.739190725 1.125667669 1 13.15896812 -6.802201425 7.624354709 1.090506193 0.841843369 0.703944735 0.082666283 0.106656387 16.61481682 0.015165933 0.020071188 1.58E-07 6.802201425 -0.248662824 VYYS(ph)PPVAR ddPTM_HeLa_CUDC101_4h_R1 2 VYYSPPVAR 9 0 O94964-2;H0YDM2;O94964;O94964-3 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 VYYS(1)PPVAR;VYYS(1)PPVAR ; 112.36 0.0090547 236950000 6065.7 5065.6 4494.1 4748 5196.5 4516.4 4603 4325.9 5352.5 5279.4 TRUE FALSE FALSE 5354.687841 5221.665132 4737.06464 4941.643963 4813.164548 4430.257195 4780.539252 4818.34297 5131.867684 5247.997894 1.020329647 0.994982322 0.902642252 0.941624609 0.917143003 0.844180444 0.91092629 0.918129745 0.977871521 1 12.35755143 -6.80219481 4.459828338 1.009471709 0.904942682 0.751660076 0.025826353 0.064341009 2.803571613 0.004030176 0.005450052 1.58E-07 6.80219481 -0.104529027 TSAVS(ph)SPLLDQQR ddPTM_HeLa_CUDC101_4h_R1 2 TSAVSSPLLDQQR 13 0 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 T(0.11)S(0.015)AVS(0.437)S(0.437)PLLDQQR;TSAVS(0.5)S(0.5)PLLDQQR ; 217.2 1.31E-24 414360000 9997.9 8246.5 7234 7131.4 8753 8500.1 7589.8 6005.2 8529 8448.4 TRUE FALSE FALSE 8825.961318 8500.56489 7625.091922 7422.249317 8107.308628 8337.974755 7882.541128 6688.807694 8177.43101 8398.148541 1.050941321 1.01219511 0.907949161 0.883795908 0.965368568 0.992834875 0.938604633 0.79646218 0.973718311 1 13.03585559 -6.80211906 6.076674199 1.024203871 0.919755019 0.42146877 0.053241837 0.122498247 11.45481901 0.008490353 0.011316855 1.58E-07 6.80211906 -0.104448852 TSFSVGS(ph)DDELGPIR ddPTM_HeLa_CUDC101_4h_R1 4 TSFSVGSDDELGPIR 15 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 TSFSVGS(1)DDELGPIR;TSFSVGS(0.999)DDELGPIR;T(0.01)S(0.001)FS(0.121)VGS(0.868)DDELGPIR;TSFSVGS(1)DDELGPIR ;;; 260.73 6.80E-70 542195000 4286.16 3713.09 3277.47 3394.37 3822.38 3923.15 3449.18 2981.03 3859.45 3929.82 TRUE FALSE FALSE 3783.742822 3827.485902 3454.659942 3532.80708 3540.410643 3848.32245 3582.216028 3320.378405 3700.361837 3906.445256 0.968589747 0.979787416 0.884348741 0.904353408 0.906299823 0.985121305 0.917001466 0.849974385 0.947245282 1 11.93164068 -6.800590807 10.62156118 0.984381301 0.911561602 0.454419108 0.03456442 0.302226278 80.45916354 0.005455653 0.007185134 1.58E-07 6.800590807 -0.072819699 LDHFNFER ddPTM_HeLa_CUDC101_4h_R1 2 LDHFNFER 8 0 R4GMV4;R4GNE8;Q9UHL4 R4GMV4 DPP7 Dipeptidyl peptidase 2 0 0 ; ; 96.331 0.020529 16435800 14735.3 11260.5 11884.1 12215.9 12711.3 11789.8 10699.4 10410.4 12431.2 11997.4 FALSE FALSE TRUE 13008.05047 11607.42266 12526.59039 12714.1172 11773.61272 11564.92921 11112.07944 11595.47786 11918.78067 11926.03893 1.090726816 0.973283982 1.050356322 1.066080471 0.987219042 0.9697209 0.931749385 0.972282408 0.999391394 1 13.54182733 -5.538033438 3.336697542 1.0400699 0.956520323 0.446702309 0.035037853 0.164100992 3.813649899 0.005934695 0.013223648 2.90E-06 5.538033438 -0.083549577 LDHKFDLMYAK ddPTM_HeLa_CUDC101_4h_R1 2 LDHKFDLMYAK 11 1 Q9BQE3;F5H5D3;P0DPH8;P0DPH7;Q9NY65;C9J2C0;Q9NY65-2;V9GZ17;A6NHL2-2;A6NHL2;P68363;P68363-2;Q71U36-2;Q71U36;P68366-2;P68366 Q9BQE3;P68363;P68366-2 TUBA1C;TUBA8;TUBAL3;TUBA1B;TUBA1A;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-8 chain;Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain 0 0 ; ; 66.595 0.038375 25957000 30329 22734.3 15092.5 23842.5 27561 24768 21512.3 20863 16687 6356.6 FALSE FALSE TRUE 26773.8806 23434.71684 15908.4462 24814.90021 25527.87994 24295.59167 22342.03662 23237.95959 15999.1548 6318.79066 4.237184302 3.708734487 2.517640963 3.927159727 4.039994567 3.844974928 3.535808957 3.677596052 2.531996335 1 12.62543276 -9.338832871 0.895201362 0.876471275 3.708214769 0.552863984 0.633427911 0.205701475 0.274296787 0.404745086 0.089680823 4.58E-10 9.338832871 2.831743493 LDIDPETITWQR ddPTM_HeLa_CUDC101_4h_R1 1 LDIDPETITWQR 12 0 A0A494C1T2;V9GZ78;V9GYY3;A0A384N5Y3;F5H2F4;P11586 A0A494C1T2 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed" 0 0 108.47 0.033992 13720000 895.14 1378.2 720.03 580.31 899.53 912.78 776.17 847.32 880.83 1243.6 FALSE FALSE TRUE 790.2130461 1420.660708 758.9569998 603.9775501 833.173464 895.3702423 806.1071369 943.7754838 844.5218146 1236.203012 0.639225951 1.14921311 0.613942041 0.488574728 0.673977863 0.724290617 0.652083136 0.763447002 0.683157868 1 10.27169997 NGSTAVAESVAS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 4 NGSTAVAESVASPQK 15 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 NGSTAVAESVAS(1)PQK;NGSTAVAESVAS(1)PQK;NGSTAVAESVAS(1)PQK;NGSTAVAESVAS(0.999)PQK ;;; 208.59 1.86E-23 167684000 20355.2 16872.6 15853.3 15936.6 16584.1 16014.6 15031.1 16619.3 19705 18171.6 TRUE FALSE FALSE 17969.19431 17392.42481 16710.37735 16586.56343 15360.72398 15709.14819 15610.85456 18511.17393 18892.75156 18063.51452 0.994778414 0.962848331 0.925090039 0.918235674 0.850372942 0.86966178 0.864220224 1.024782521 1.045906739 1 14.140791 -6.800531717 1.545862759 0.998166399 0.897976526 0.486521384 0.047873182 0.222978261 1.07823375 0.007660617 0.011032163 1.58E-07 6.800531717 -0.100189873 FLMPEAYPSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 FLMPEAYPSSPR 12 0 O43166-3;O43166-2;O43166 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 FLMPEAYPS(0.092)S(0.908)PR;FLMPEAYPS(0.373)S(0.627)PR;FLMPEAYPS(0.065)S(0.935)PR ;; 153.49 0.00036626 80216000 9758.2 7911.6 7685.1 6818.5 7959.1 8794.9 7936.3 6971.9 8437.9 8257.4 TRUE FALSE FALSE 8614.358588 8155.347018 8100.579752 7096.587902 7371.97305 8627.151936 8242.405749 7765.552915 8090.086191 8208.284618 1.049471234 0.993550711 0.986878517 0.864564063 0.898113722 1.051029824 1.004156914 0.946062823 0.985600106 1 13.00286504 -6.79974801 2.843892426 1.022994434 0.956524022 0.175974777 0.051556815 0.288662118 4.79478019 0.008997484 0.012460163 1.59E-07 6.79974801 -0.066470412 LDIDSPPITAR ddPTM_HeLa_CUDC101_4h_R1 2 LDIDSPPITAR 11 0 P14618;B4DNK4;P14618-2;H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;H3BU13;H3BN34;H3BQZ3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 138.08 0.008398 80916000 3259.9 2675.2 2934.2 2708.4 2967.8 2871.1 2867.1 2544.6 2772 3107.6 FALSE FALSE TRUE 2877.779464 2757.619741 3092.831727 2818.860259 2748.871307 2816.338551 2977.685007 2834.266978 2657.736987 3089.115857 0.93158677 0.892688999 1.001202891 0.912513609 0.88985698 0.911697289 0.963927915 0.917501029 0.860355231 1 11.59297826 -9.13977377 0.573106655 1.010065849 0.926118311 0 0.053930056 0.87536247 0.438371653 0.038745751 0.007586887 7.25E-10 9.13977377 -0.083947538 S(ph)PTVPSQNPSR ddPTM_HeLa_CUDC101_4h_R1 1 SPTVPSQNPSR 11 0 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 S(1)PTVPSQNPSR 140.45 0.001389 19594000 992.43 798.07 595.03 699.62 728.3 548.64 758.12 549.87 677 807.19 TRUE FALSE FALSE 876.0988598 822.6575908 627.1991217 728.1535276 674.57476 538.1756061 787.3609424 612.4649781 649.0937735 802.388798 1.091863274 1.025260563 0.781664853 0.90748217 0.840708098 0.670716749 0.981271105 0.763302005 0.808951689 1 9.648157655 -6.799158419 7.92791688 1.043549663 0.828932339 0.266841154 0.109843492 0.107668295 19.35620335 0.012753202 0.016877703 1.59E-07 6.799158419 -0.214617325 LDK(ac)VLSDMKR ddPTM_HeLa_CUDC101_4h_R1 1 LDKVLSDMKR 10 2 H3BTX0;Q9BTK6 H3BTX0 PAGR1 PAXIP1-associated glutamate-rich protein 1 0 1 LDK(1)VLSDMKR 72.289 0.033519 0 0 0 0 0 162.08 149.62 107.96 0 0 0 FALSE TRUE FALSE 0 0 0 0 150.1236813 146.7662478 112.1240534 0 0 0 0 LDKDNLSYIEHIFEISR ddPTM_HeLa_CUDC101_4h_R1 1 LDKDNLSYIEHIFEISR 17 1 Q15121-2;Q15121 Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 0 0 114.28 0.00038965 4217200 5335.5 3674.2 3766.8 3770.8 4579.3 4468 3848.1 3623.9 4011.9 5064.9 FALSE FALSE TRUE 4710.080778 3787.397747 3970.444602 3924.589523 4241.494162 4382.780344 3996.522506 4036.430128 3846.527784 5034.77375 0.935509918 0.752247854 0.788604374 0.7794967 0.842439874 0.870501946 0.793783932 0.801710331 0.763992182 1 12.29771123 -7.423003539 3.954898952 0.972913376 0.806474404 0.069764871 0.073785462 0.072502926 1.953550891 0.006845189 0.007703459 3.78E-08 7.423003539 -0.166438972 IES(ph)DEEEDFENVGK ddPTM_HeLa_CUDC101_4h_R1 3 IESDEEEDFENVGK 14 0 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK ;; 272.97 6.11E-86 107365000 13895.6 11626.6 10955.1 10482.2 12073.6 11822.5 10746 10812.9 12400.8 12243.7 TRUE FALSE FALSE 12266.77883 11984.80177 11547.36584 10909.70942 11182.95458 11597.00551 11160.47682 12043.79683 11889.63378 12170.87393 1.00787987 0.984711684 0.948770475 0.896378476 0.918829219 0.952849038 0.91698237 0.989558917 0.976892362 1 13.57114514 -6.799043188 2.845840808 1.003463107 0.933233561 0.537840325 0.024911241 0.111649435 1.85733484 0.003678025 0.005094503 1.59E-07 6.799043188 -0.070229546 LDLGEDYPSGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LDLGEDYPSGKK 12 1 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 1 ; LDLGEDYPSGK(1)K;LDLGEDYPSGK(1)K 230.41 2.29E-23 5537400 3332.3 2816.7 2908.8 2911.7 2953.2 3230.7 3074.7 3318.9 2318.7 3497.5 FALSE TRUE FALSE 2941.692845 2903.479188 3066.058527 3030.451711 2735.34832 3169.07978 3193.292209 3696.710161 2223.122205 3476.696714 0.846117187 0.835125818 0.881888407 0.871646842 0.786766447 0.911520343 0.918484548 1.063282323 0.639435184 1 11.76350151 -3.243042515 14.48653302 0.910026343 0.89441361 0 0.114903526 0 0 0.011607898 0 0.000571423 3.243042515 -0.015612733 SRS(ph)ESETSTMAAK ddPTM_HeLa_CUDC101_4h_R1 3 SRSESETSTMAAK 13 1 A0A087WVF1;Q96B23-2;Q96B23 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 S(0.236)RS(0.762)ES(0.003)ETSTMAAK;S(0.213)RS(0.773)ES(0.014)ETSTMAAK;S(0.014)RS(0.85)ES(0.135)ET(0.001)STMAAK ;; 144.41 0.00033307 302196000 18684.4 18047.7 17138.5 17975.6 20936.5 19467.8 18912.8 15910.8 17567.8 18040.7 TRUE FALSE FALSE 16494.24296 18603.72825 18065.05915 18708.72267 19392.05611 19096.48415 19642.27303 17722.02116 16843.64785 17933.39311 0.919750259 1.037379158 1.007341948 1.043233846 1.081337814 1.064856161 1.095290384 0.988213499 0.939233738 1 14.13036086 -6.798455013 1.639808713 0.963221079 1.057145652 0.541481846 0.037319007 0.220663961 1.204648755 0.007316324 0.010492674 1.59E-07 6.798455013 0.093924574 GEFSAS(ph)PMLK ddPTM_HeLa_CUDC101_4h_R1 4 GEFSASPMLK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GEFS(0.263)AS(0.737)PMLK;GEFS(0.142)AS(0.858)PMLK;GEFS(0.01)AS(0.99)PMLK;GEFS(0.016)AS(0.984)PMLK ;;; 157.03 9.00E-05 2338959000 20442.1 17390.7 16432.8 15340.6 17115.4 17558.1 16260.7 18064.7 19450.2 18436.6 TRUE FALSE FALSE 18045.90803 17926.48685 17321.20687 15966.25598 15852.83104 17223.2085 16887.88065 20121.11243 18648.45452 18326.93828 0.984665728 0.978149573 0.945122781 0.871190579 0.865001606 0.93977555 0.921478557 1.097898193 1.017543369 1 14.16167817 -6.798390158 3.141982186 0.99227112 0.931991201 0.163057099 0.06057886 0.325182255 6.617994093 0.009693085 0.01336233 1.59E-07 6.798390158 -0.060279919 SRS(ph)AS(ph)RT(ph)LRT(ph)AGVHIIR ddPTM_HeLa_CUDC101_4h_R1 1 SRSASRTLRTAGVHIIR 17 3 Q14CZ8 Q14CZ8 HEPACAM Hepatocyte cell adhesion molecule 4 0 S(0.178)RS(0.844)AS(0.989)RT(0.989)LRT(1)AGVHIIR 46.131 0.0031664 0 320.82 239.69 119.73 134.27 254.77 176.85 203.09 174.52 164.83 166.31 TRUE FALSE FALSE 283.2139659 247.0745648 126.202966 139.746111 235.9761247 173.4768809 210.9232493 194.3866514 158.0356376 165.3207807 1.713117762 1.494516078 0.763382349 0.845302752 1.427383319 1.049334997 1.275842325 1.175814985 0.955933289 1 7.369124272 -6.797611613 24.99917036 1.357991683 1.10041032 0.093824184 0.275538216 275.8032672 190610.7644 0.052564844 0.06908495 1.59E-07 6.797611613 -0.257581363 LQLQGLDLS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 2 LQLQGLDLSSR 11 0 P49454 P49454 CENPF Centromere protein F 1 0 LQLQGLDLS(0.974)S(0.026)R;LQLQGLDLS(0.857)S(0.143)R ; 147.96 0.0008465 32028000 6023.2 4987.2 3547.9 3539.2 4356.4 4566 3705.7 2139.62 5085.5 5427 TRUE FALSE FALSE 5317.169627 5140.849721 3739.710206 3683.543874 4035.037051 4478.911157 3848.63009 2383.185692 4875.873538 5394.719963 0.985624771 0.952940979 0.693216744 0.682805391 0.747960428 0.830239788 0.713406834 0.441762632 0.903823289 1 12.39733236 -6.79725171 4.496632085 0.991897022 0.694367152 0.656206878 0.096876656 0.082450777 3.740004495 0.014842205 0.020101296 1.59E-07 6.79725171 -0.297529869 AYQDQIS(ph)PVPGAPK ddPTM_HeLa_CUDC101_4h_R1 2 AYQDQISPVPGAPK 14 0 A0A087WU73;W0Z7M9;B0QY83;A0A499FIJ6;Q969V6;E7ER32;A0A087X287;A0A494BZX7 A0A087WU73 MKL1;mkl1 MKL/myocardin-like protein 1 1 0 AYQDQIS(1)PVPGAPK;AYQDQIS(1)PVPGAPK ; 101.2 0.0070706 43246000 6629 6340.6 6940.8 6571.1 7980.3 7386.3 7456.2 6764.3 6397.2 6888 TRUE FALSE FALSE 5851.958669 6535.946371 7316.040643 6839.097861 7391.609168 7245.418634 7743.788132 7534.32057 6133.504708 6847.02987 0.854671117 0.954566651 1.068498427 0.99884154 1.079535114 1.058184172 1.130970403 1.100377932 0.895790558 1 12.74126259 -6.796616822 4.137154693 0.930156373 1.07258343 0.705238816 0.046601774 0.123842991 4.605271381 0.010178497 0.013847207 1.60E-07 6.796616822 0.142427056 NSS(ph)PGEASLLEK ddPTM_HeLa_CUDC101_4h_R1 3 NSSPGEASLLEK 12 0 Q76FK4-2;Q76FK4-4;Q76FK4 Q76FK4-2 NOL8 Nucleolar protein 8 1 0 NS(0.001)S(0.999)PGEASLLEK;NS(0.031)S(0.969)PGEASLLEK;NS(0.005)S(0.995)PGEASLLEK ;; 235.71 6.21E-43 145836000 17154.7 13877.6 9784.5 12887.3 12905.7 13175.3 11691.4 9840.7 12271.4 13139.6 TRUE FALSE FALSE 15143.85207 14305.15241 10313.47967 13412.8998 11953.67222 12924.0031 12142.34121 10960.92551 11765.5677 13061.44507 1.159431593 1.095219734 0.789612452 1.026907798 0.915187573 0.989477277 0.929632299 0.839181687 0.900786064 1 13.6730269 -6.796395907 24.98109741 1.078885746 0.924145478 0.260385934 0.092170281 120.5324448 86136.07255 0.013411742 0.017626893 1.60E-07 6.796395907 -0.154740268 SKQSETVDQNSDS(ph)DEMLAILK ddPTM_HeLa_CUDC101_4h_R1 1 SKQSETVDQNSDSDEMLAILK 21 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 S(0.047)KQS(0.047)ET(0.042)VDQNS(0.148)DS(0.715)DEMLAILK 52.185 0.024398 5435000 568.04 577.16 743.87 703.67 898.26 718.77 770.66 852.05 770.33 602.22 TRUE FALSE FALSE 501.4552123 594.9416155 784.0858623 732.3687041 831.9971494 705.0606598 800.3846144 949.0439279 738.5766713 598.6379687 0.83766022 0.993825395 1.309783046 1.22339167 1.389816873 1.17777471 1.337009439 1.585338681 1.233761823 1 9.225539975 -6.796295394 3.615355549 0.922754725 1.330852877 0.503900987 0.1461471 0.085625045 2.347642247 0.018668036 0.025573255 1.60E-07 6.796295394 0.408098152 LPPESPGPPES(ph)PGPPER ddPTM_HeLa_CUDC101_4h_R1 1 LPPESPGPPESPGPPER 17 0 Q9Y2D5-5;Q9Y2D5-7;F8WF36 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 LPPES(0.124)PGPPES(0.876)PGPPER 70.944 0.024308 5217000 264.68 329.58 312.44 362.45 459.08 361.18 356.59 434.79 419.5 251.56 TRUE FALSE FALSE 233.6546116 339.7339692 329.3314515 377.2322776 425.214583 354.2910933 370.3437957 484.2847361 402.2080324 250.0637099 0.934380329 1.358589654 1.316990184 1.508544673 1.700424996 1.416803315 1.480997766 1.93664541 1.60842224 1 7.966151894 -6.796183268 1.130303867 0.963436805 1.608393935 0.226899116 0.251607345 0.14323727 0.364882544 0.027200118 0.040701661 1.60E-07 6.796183268 0.644957131 S(ph)PDEEDYDYESYEK ddPTM_HeLa_CUDC101_4h_R1 2 SPDEEDYDYESYEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(1)PDEEDYDYESYEK;S(1)PDEEDYDYESYEK ; 177.1 1.74E-07 43692000 5530.7 4490.4 3818.6 3901.9 3943.6 3971 3844.6 3048.2 4825.4 5100.9 TRUE FALSE FALSE 4882.39973 4628.743902 4025.045067 4061.036347 3652.688485 3895.259791 3992.88751 3395.194767 4626.49497 5070.55962 0.962891692 0.912866478 0.793806871 0.80090496 0.720371864 0.768211023 0.787464858 0.669589754 0.912422951 1 12.30792927 -6.7950934 1.092485363 0.988199023 0.741793382 0.840602688 0.041041346 0.084675263 0.201365873 0.006044393 0.009097016 1.60E-07 6.7950934 -0.246405642 LDPFADGGK(ac)TPDPK ddPTM_HeLa_CUDC101_4h_R1 2 LDPFADGGKTPDPK 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 1 ; LDPFADGGK(1)TPDPK;LDPFADGGK(1)TPDPK 96.464 0.019207 1022560 380.01 365.62 400.19 409.12 473.78 544.27 292.88 170.34 477.03 592.69 FALSE TRUE FALSE 335.4658039 376.8843188 421.8254819 425.805682 438.8301933 533.8889566 304.1764797 189.7308171 457.3666215 589.1646535 0.569392277 0.639692685 0.715972147 0.722727814 0.744834556 0.906179543 0.516284332 0.322033605 0.776296777 1 9.202527069 -9.351949219 0.959005019 1.010434167 0.649389667 0.227041389 0.161556155 0.467256164 0.733446153 0.121314331 0.028248779 4.45E-10 9.351949219 -0.3610445 S(ph)PNELVDDLFK ddPTM_HeLa_CUDC101_4h_R1 4 SPNELVDDLFK 11 0 F2Z2K0;Q9UNZ2-4;Q9UNZ2;Q9UNZ2-5 F2Z2K0 NSFL1C NSFL1 cofactor p47 1 0 S(1)PNELVDDLFK;S(1)PNELVDDLFK;S(1)PNELVDDLFK;S(1)PNELVDDLFK ;;; 196.67 3.30E-16 221076000 4853.24 4034.85 2993.86 3161.9 3513.94 4186.15 3716.24 3424.49 3894.55 4002.1 TRUE FALSE FALSE 4284.350564 4159.158946 3155.717128 3290.855949 3254.723647 4106.306163 3859.576622 3814.320099 3734.015001 3978.295331 1.07693125 1.045462591 0.793233499 0.827202526 0.818120169 1.032177307 0.970158397 0.958782539 0.938596733 1 11.95793466 -6.794984544 24.986644 1.038028802 0.902121873 0.323997368 0.078855118 138.5268455 103183.4208 0.012987831 0.017069892 1.60E-07 6.794984544 -0.135906929 RRS(ph)PPADAIPK ddPTM_HeLa_CUDC101_4h_R1 1 RRSPPADAIPK 11 2 P18754-2;M0R1Q8;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;C9JW69;P18754 P18754-2 RCC1 Regulator of chromosome condensation 1 0 RRS(1)PPADAIPK 93.243 0.016995 862590000 7301.9 6415.4 7126.8 6738.5 7132.5 7550.1 6395.1 6995.5 7266 6968.2 TRUE FALSE FALSE 6445.982351 6613.05087 7512.096365 7013.325156 6606.349685 7406.094422 6641.761149 7791.839443 6966.492405 6926.752836 0.930592227 0.95471154 1.084504752 1.012498254 0.953744105 1.069201485 0.95885638 1.124890642 1.005737114 1 12.75796348 -6.794894662 24.99197407 0.965369853 1.027517639 0.227056098 0.0538525 196.4191414 146729.5578 0.00838588 0.011021615 1.60E-07 6.794894662 0.062147786 SSQLDSGVPSS(ph)PGGR ddPTM_HeLa_CUDC101_4h_R1 1 SSQLDSGVPSSPGGR 15 0 I3L4X5;Q70CQ4 I3L4X5 USP31 Ubiquitin carboxyl-terminal hydrolase 31 1 0 SSQLDSGVPS(0.006)S(0.994)PGGR 142.57 3.07E-05 0 2121.6 1801.8 1464.7 1447.2 1532 1651 1490.8 1637.1 1558.4 1921.9 TRUE FALSE FALSE 1872.909264 1857.311322 1543.886112 1506.223071 1418.987412 1619.509926 1548.300655 1823.460847 1494.162092 1910.468453 0.980340325 0.972175866 0.808119134 0.7884051 0.742743179 0.847703045 0.810429847 0.954457449 0.782091999 1 10.89971072 -6.794656711 5.756156839 0.989680438 0.820000922 0.183054865 0.083372269 0.070260049 6.251679155 0.008136462 0.010903132 1.60E-07 6.794656711 -0.169679516 LDQEDALLGSYPVDDGCR ddPTM_HeLa_CUDC101_4h_R1 1 LDQEDALLGSYPVDDGCR 18 0 K7EP07;K7EK42;A0A494C0X0;Q99426-2;Q99426;K7EL99;K7EQH0;K7ER04 K7EP07 TBCB Tubulin-folding cofactor B 0 0 197.17 1.12E-24 0 1315.3 917.05 786.14 718.74 713.7 783.46 482.65 648.18 996.17 877.44 FALSE FALSE TRUE 1161.122528 945.3032235 828.6411063 748.0533239 661.0517729 768.5168058 501.2659722 721.9661912 955.107451 872.2209479 1.331225225 1.083788719 0.950035777 0.857642007 0.75789486 0.881103358 0.57470068 0.827733148 1.095029251 1 9.768549829 -6.457181274 1.632878135 1.157031003 0.759209746 0.697804343 0.108667605 0.182367144 0.964239282 0.02371288 0.039483365 3.49E-07 6.457181274 -0.397821257 LDQMDEDELER ddPTM_HeLa_CUDC101_4h_R1 1 LDQMDEDELER 11 0 F8WBV5;G3XAJ4;F8WCJ3;B8ZZX4;O14530-2;O14530 F8WBV5 TXNDC9 Thioredoxin domain-containing protein 9 0 0 128.85 0.012898 2530800 4554.9 4004.5 3602.6 3411 4500.8 3944.8 4023.7 4524.2 3792 5148.3 FALSE FALSE TRUE 4020.981527 4127.873898 3797.367453 3550.115324 4168.784951 3869.559512 4178.895457 5039.216641 3635.692155 5117.677683 0.785704332 0.806591223 0.74200989 0.693696544 0.814585288 0.7561163 0.816560893 0.984668624 0.710418354 1 12.32127357 -9.131944124 0.793016896 1.006234858 0.793603046 0 0.114410525 0.430563625 0.469099743 0.056315737 0.014667092 7.38E-10 9.131944124 -0.212631812 LDQPMTEIVSR ddPTM_HeLa_CUDC101_4h_R1 1 LDQPMTEIVSR 11 0 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 114.97 0.027125 17494000 1123.1 678.97 597.29 831.77 1179.7 900.78 791.56 854.99 1126.6 908.13 FALSE FALSE TRUE 991.4519205 699.8882609 629.5813041 865.6931758 1092.675881 883.5991223 822.0907344 952.3186056 1080.161071 902.7284024 1.098283734 0.775303246 0.697420511 0.958974121 1.210414869 0.978809485 0.91067339 1.054933691 1.196551552 1 9.818148189 S(ph)TPS(ph)PTPVESSDPK ddPTM_HeLa_CUDC101_4h_R1 1 STPSPTPVESSDPK 14 0 Q9NW07 Q9NW07 ZNF358 Zinc finger protein 358 2 0 S(0.755)T(0.24)PS(0.903)PT(0.103)PVESSDPK 120.21 0.01396 19028000 5963.4 4868.3 4588.9 4987.1 4818.4 4335.2 4547.2 4310.4 5401.3 5540 TRUE FALSE FALSE 5264.379292 5018.286553 4836.989815 5190.495494 4462.956232 4252.513283 4722.587027 4801.078513 5178.656128 5507.047834 0.955934913 0.911248041 0.878327184 0.942518687 0.810408111 0.772194724 0.857553297 0.871806212 0.94036883 1 12.42706342 -6.794512029 0.586869212 0.99167385 0.826478229 0.609740149 0.041327262 0.292971859 0.212864321 0.010934828 0.018824602 1.61E-07 6.794512029 -0.165195621 REEDEPEERSGDETPGS(ph)EVPGDK ddPTM_HeLa_CUDC101_4h_R1 1 REEDEPEERSGDETPGSEVPGDK 23 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 REEDEPEERS(0.185)GDET(0.185)PGS(0.63)EVPGDK 48.146 0.022217 106930000 2587.8 2130.3 2377.6 2548.7 2177.6 2506.2 2465.6 1720.8 2191.3 2261.7 TRUE FALSE FALSE 2284.462007 2195.932018 2506.140248 2652.647002 2016.962786 2458.398411 2560.699018 1916.688916 2100.973687 2248.247308 1.016107969 0.976730634 1.114708439 1.179873314 0.897126744 1.093473303 1.138975685 0.852525836 0.93449403 1 11.13458503 -6.794268379 24.99720478 1.00550339 1.05179553 0.070039693 0.099671048 470.4666905 358229.115 0.014675189 0.019287706 1.61E-07 6.794268379 0.04629214 LDRETEELHHDR ddPTM_HeLa_CUDC101_4h_R1 4 LDRETEELHHDR 12 1 O60869-2;O60869-3;O60869 O60869-2 EDF1 Endothelial differentiation-related factor 1 0 0 ;;; ;;; 111.52 0.0030401 261974000 19203.5 17834.9 19491.4 18233.8 21113.7 18435.7 16839.2 18930.9 19053.4 21574.8 FALSE FALSE TRUE 16952.49484 18384.37213 20545.16404 18977.45318 19556.18442 18084.06974 17488.69358 21085.91713 18268.01079 21446.47213 0.790456106 0.857221272 0.957974063 0.884875287 0.911860202 0.843218858 0.815457828 0.983188144 0.851795609 1 14.38845273 -9.586871756 1.39218726 0.999620549 0.867926316 0 0.072943119 0.349561034 1.220754151 0.042540206 0.010021236 2.59E-10 9.586871756 -0.131694233 VVLGDGVQLPPGDYST(ph)TPGGTLFSTT(ph)PGGTR ddPTM_HeLa_CUDC101_4h_R1 1 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 VVLGDGVQLPPGDY(0.141)S(0.096)T(0.418)T(0.345)PGGTLFS(0.04)T(0.302)T(0.641)PGGT(0.017)R 113.36 3.17E-11 57207000 11005 9634.3 7903.1 8039.6 10311 9221.4 8941.6 8441.9 10034 10039 TRUE FALSE FALSE 9715.010582 9931.121364 8330.365492 8367.489638 9550.378072 9045.517159 9286.480507 9402.891773 9620.394273 9979.287582 0.973517448 0.995173381 0.83476555 0.83848567 0.957020027 0.90642915 0.930575498 0.942240786 0.964036179 1 13.28472111 -6.792466738 24.99995201 0.987720878 0.902775454 0.51414476 0.038747556 117.9881933 95067.27716 0.006432509 0.008454445 1.61E-07 6.792466738 -0.084945424 VS(ph)FRDPLVSEGGPR ddPTM_HeLa_CUDC101_4h_R1 1 VSFRDPLVSEGGPR 14 1 H0Y413;O43900-2;O43900 H0Y413 PRICKLE3 Prickle-like protein 3 1 0 VS(1)FRDPLVSEGGPR 77.137 0.017893 4375500 2010.2 1654.7 1324.2 1355.2 1163.2 1468.2 1390.6 1407.3 1478.1 1763.6 TRUE FALSE FALSE 1774.567403 1705.679346 1395.790257 1410.470914 1077.393053 1440.196531 1444.235908 1567.501343 1417.172092 1753.110029 1.012239605 0.972944834 0.796179495 0.804553559 0.614561001 0.821509493 0.823813614 0.894126049 0.808376011 1 10.77570083 -6.792329234 3.792329538 1.005284018 0.785935325 0.357577511 0.091131121 0.090368219 2.770051938 0.010890885 0.014905098 1.61E-07 6.792329234 -0.219348692 IEEDRCSNS(ph)ADITGPSFIR ddPTM_HeLa_CUDC101_4h_R1 1 IEEDRCSNSADITGPSFIR 19 1 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 IEEDRCS(0.441)NS(0.505)ADIT(0.054)GPSFIR 82.449 0.027817 11951000 1250.6 885.27 643.92 552.26 961.43 872.95 863.21 588.87 738.92 744.07 TRUE FALSE FALSE 1104.006564 912.5441194 678.732263 574.7835499 890.5072243 856.2999332 896.5042989 655.9045805 708.4614048 739.6442385 1.492618351 1.23376087 0.917646928 0.777108128 1.203966959 1.157718655 1.212075011 0.88678387 0.957840767 1 9.530687706 -6.791545368 20.83280855 1.239210814 1.037126043 0.076317015 0.194450244 47.03398053 32546.14299 0.036748038 0.04830721 1.62E-07 6.791545368 -0.202084771 LSKS(ph)DEQLSSLDR ddPTM_HeLa_CUDC101_4h_R1 2 LSKSDEQLSSLDR 13 1 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 LS(0.012)KS(0.987)DEQLSSLDR;LS(0.002)KS(0.998)DEQLSSLDR ; 175.7 1.18E-06 81131000 3722.8 3059 2731 2817.8 2703.3 2952.9 3122.7 2316.7 2970.9 3190.4 TRUE FALSE FALSE 3286.419027 3153.244164 2878.646121 2932.722064 2503.882945 2896.578352 3243.143585 2580.423764 2848.438245 3171.423359 1.036259955 0.994267812 0.907682701 0.924733702 0.789513938 0.913337018 1.022614523 0.81364847 0.898157679 1 11.63091476 -6.79026685 3.129461384 1.017211778 0.896747673 0.216086633 0.070825777 0.161466705 3.268954542 0.009595252 0.013265446 1.62E-07 6.79026685 -0.120464104 NGSLDSPGKQDT(ph)EEDEEEDEKDKGK ddPTM_HeLa_CUDC101_4h_R1 1 NGSLDSPGKQDTEEDEEEDEKDKGK 25 3 Q9Y266;A0A0A0MSU9;A0A0A0MSS4 Q9Y266 NUDC Nuclear migration protein nudC 1 0 NGS(0.002)LDS(0.022)PGKQDT(0.977)EEDEEEDEKDKGK 58.755 0.0037144 14781000 2080.8 1782 2224.8 2101.7 2089.6 1879 1854.4 2458.9 2054.2 1985.3 TRUE FALSE FALSE 1836.891778 1836.901308 2345.079418 2187.41641 1935.454371 1843.161206 1925.924829 2738.811237 1969.525007 1973.491347 0.930782788 0.930787617 1.188289688 1.108399291 0.980726049 0.933959608 0.975897276 1.387799972 0.997990191 1 10.94653448 -6.789710793 24.99840027 0.963661314 1.078372702 0.203100186 0.1242097 286.2713131 253128.3962 0.019744951 0.025952665 1.62E-07 6.789710793 0.114711388 SASVVSS(ph)DSISTSADNFSPDLR ddPTM_HeLa_CUDC101_4h_R1 1 SASVVSSDSISTSADNFSPDLR 22 0 Q13614 Q13614 MTMR2 Myotubularin-related protein 2 1 0 SASVVS(0.018)S(0.978)DSIS(0.001)T(0.001)S(0.001)ADNFSPDLR 132.14 2.85E-07 124830000 2992.3 2632.4 2253.7 1971 2793 2527.1 2208.8 2379.1 2660.1 2865.6 TRUE FALSE FALSE 2641.54713 2713.501124 2375.541839 2051.385899 2586.965954 2478.899778 2293.994156 2649.927127 2550.449552 2848.555284 0.927328722 0.952588542 0.833946195 0.720149583 0.908167719 0.870230531 0.805318461 0.930270563 0.895348448 1 11.47601469 -6.789131047 6.051687971 0.96410883 0.841129958 0.373870766 0.060585229 0.108160928 11.90228749 0.009443499 0.01266404 1.63E-07 6.789131047 -0.122978872 SVCPVTSGFSSPS(ph)PSAAAAAQEVR ddPTM_HeLa_CUDC101_4h_R1 1 SVCPVTSGFSSPSPSAAAAAQEVR 24 0 K4DI93 K4DI93 CUL4B 1 0 SVCPVTSGFS(0.008)S(0.023)PS(0.666)PS(0.303)AAAAAQEVR 71.864 0.00050801 0 584.6 664.14 710.75 676.74 931 839.72 827.39 761.14 710.97 503.8 TRUE FALSE FALSE 516.0740742 684.6013662 749.1752949 704.3403823 862.3219848 823.7037401 859.3027095 847.785101 681.6635157 500.8033752 1.030492404 1.367006295 1.495946976 1.406420997 1.721877343 1.644764754 1.715848479 1.692850214 1.361140019 1 8.968100475 -6.788322588 0.864135005 0.995426276 1.690635796 0.699871542 0.138417992 0.08826121 0.131856173 0.015959063 0.025197165 1.63E-07 6.788322588 0.69520952 SSSSSASPSS(ph)PSSREEK ddPTM_HeLa_CUDC101_4h_R1 1 SSSSSASPSSPSSREEK 17 1 E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SSSSSASPS(0.454)S(0.479)PS(0.033)S(0.033)REEK 79.695 0.0073446 137650000 1280.1 1422.7 2187.2 1687.2 2341.2 1551.3 1907.9 1954.3 2001.2 1937.2 TRUE FALSE FALSE 1130.048619 1466.531701 2305.446648 1756.011309 2168.49434 1521.711537 1981.488342 2176.769612 1918.709689 1925.677448 0.586831725 0.761566638 1.197213298 0.911892752 1.12609427 0.790221404 1.028982473 1.1303916 0.996381658 1 10.91115036 -6.78831781 24.86420905 0.796191735 1.018708164 0.253486654 0.156918696 215.3346388 199197.0401 0.029720898 0.039066857 1.63E-07 6.78831781 0.222516429 LDSEDKDK(ac)EGKPLLK ddPTM_HeLa_CUDC101_4h_R1 1 LDSEDKDKEGKPLLK 15 3 P13639 P13639 EEF2 Elongation factor 2 0 1 LDSEDK(0.095)DK(0.894)EGK(0.011)PLLK 122.97 0.018075 1346800 1830.1 757.51 690.38 586.21 1385.8 1061.5 1193.3 1047.7 1049.8 814.3 FALSE TRUE FALSE 1615.578452 780.8479852 727.7040311 610.1181776 1283.572295 1041.253656 1239.325981 1166.965933 1006.5268 809.4565074 1.995880492 0.964657123 0.89900325 0.75373806 1.585721139 1.286361462 1.531059383 1.44166601 1.243460014 1 9.660809755 QSS(ph)TPSAPELGQQPDVNISEWK ddPTM_HeLa_CUDC101_4h_R1 1 QSSTPSAPELGQQPDVNISEWK 22 0 I3L213;Q93100-4;Q93100-2;Q93100-3;Q93100 I3L213 PHKB Phosphorylase b kinase regulatory subunit beta 1 0 QS(0.311)S(0.5)T(0.183)PS(0.006)APELGQQPDVNISEWK 118.41 4.36E-07 6244600 1943.9 1734.8 1269.2 1195.3 1590.8 1754.1 1430.1 1639.4 1538.6 1878.6 TRUE FALSE FALSE 1716.038989 1788.247132 1337.816791 1244.049501 1473.449853 1720.643465 1485.259436 1826.022669 1475.178257 1867.426004 0.918932791 0.957599995 0.716396146 0.666184094 0.789027169 0.921398471 0.795351159 0.977828661 0.789952723 1 10.86683536 -6.788025632 23.50855902 0.960339838 0.807750855 0.155997243 0.101518548 84.95224236 75117.53587 0.014656988 0.019267433 1.63E-07 6.788025632 -0.152588984 VSSAQRSPET(ph)IAAEEDTDSKFK ddPTM_HeLa_CUDC101_4h_R1 1 VSSAQRSPETIAAEEDTDSKFK 22 2 Q9NRE2;Q9NRE2-2;S4R3C8 Q9NRE2 TSHZ2 Teashirt homolog 2 1 0 VSSAQRS(0.067)PET(0.932)IAAEEDTDSKFK 87.963 0.001599 8111600 468.8 526 618.39 565.36 789.34 597.27 476.88 825.71 596.88 635.69 TRUE FALSE FALSE 413.8479747 542.2054365 651.8220339 588.4178245 731.1119608 585.8780699 495.2734213 919.7054888 572.2763538 631.9088876 0.654917161 0.858043695 1.031512686 0.931175105 1.15698952 0.927155926 0.78377347 1.455440028 0.90563112 1 9.303572747 -6.787797617 5.284286604 0.833269402 1.030469243 0.200880354 0.185214348 0.240860958 17.82395545 0.031992292 0.043180959 1.63E-07 6.787797617 0.197199841 EVS(ph)PLLPK ddPTM_HeLa_CUDC101_4h_R1 2 EVSPLLPK 8 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 EVS(1)PLLPK;EVS(1)PLLPK ; 106.2 0.01335 94187000 20490.1 14999.6 15807 14894.9 12233.3 13968 15308.5 15333 15551.7 17661.2 TRUE FALSE FALSE 18088.28154 15461.7199 16661.57423 15502.3784 11330.87383 13701.58367 15898.95397 17078.44674 14910.65234 17556.1504 1.030310241 0.880701039 0.949044856 0.883016951 0.645407653 0.780443512 0.905605934 0.972789954 0.849312179 1 14.09968891 -6.787105064 1.315282381 1.013875404 0.831480627 0.115254607 0.101301726 0.287923466 0.999957646 0.01658691 0.024440576 1.63E-07 6.787105064 -0.182394776 STQIATVHCS(ph)AQTTSR ddPTM_HeLa_CUDC101_4h_R1 2 STQIATVHCSAQTTSR 16 0 Q8NCM8;Q8NCM8-2 Q8NCM8 DYNC2H1 Cytoplasmic dynein 2 heavy chain 1 1 0 STQIAT(0.001)VHCS(0.991)AQT(0.003)T(0.003)S(0.002)R;STQIAT(0.003)VHCS(0.315)AQT(0.315)T(0.315)S(0.052)R ; 109.1 0.0018557 64120000 6819 5971 5260.4 4999.3 6206 6113.8 5827.1 5543.4 5560.8 6308.1 TRUE FALSE FALSE 6019.687157 6154.959433 5544.793136 5203.193063 5748.195744 5997.189451 6051.853199 6174.438249 5331.58147 6270.579141 0.959989025 0.981561558 0.884255347 0.829778709 0.916692959 0.956401206 0.965118702 0.984667941 0.850253438 1 12.61438298 -6.787055205 24.64698423 0.980612194 0.921760738 0 0.058928544 194.3219121 186971.5603 0.007641666 0.010045327 1.63E-07 6.787055205 -0.058851456 DFS(ph)LTS(ph)SSQTPGATKS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 DFSLTSSSQTPGATKSR 17 1 Q9NZ53-2;Q9NZ53 Q9NZ53-2 PODXL2 Podocalyxin-like protein 2 3 0 DFS(0.804)LT(0.322)S(0.841)S(0.032)S(0.003)QT(0.03)PGAT(0.015)KS(0.953)R 69.72 0.040283 126210000 1463 1338.8 1548.6 1513.3 1574.3 1193 1511.9 1699.5 1600.4 1527.5 TRUE FALSE FALSE 1291.509358 1380.046841 1632.322 1575.018915 1458.167025 1170.245513 1570.214489 1892.96421 1534.430835 1518.414362 0.850564503 0.908873675 1.075017493 1.037278726 0.960322203 0.770702347 1.034114619 1.246671698 1.010548157 1 10.56834983 -6.786349205 24.71518912 0.925919541 1.007942714 0.082449929 0.118408491 384.6118763 381605.2642 0.020170027 0.026515506 1.64E-07 6.786349205 0.082023173 ELVGPPLAETVFT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 ELVGPPLAETVFTPK 15 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 ELVGPPLAET(0.174)VFT(0.826)PK;ELVGPPLAETVFT(1)PK;ELVGPPLAET(0.006)VFT(0.994)PK;ELVGPPLAET(0.229)VFT(0.771)PK ;;; 193.77 1.91E-15 119277400 20228.7 13899.5 12513.8 11278.2 12842.8 13885 11379.7 9814.7 15522.6 14015.8 TRUE FALSE FALSE 17857.52245 14327.72712 13190.33388 11738.17374 11895.41223 13620.16676 11818.61884 10931.96578 14882.75186 13932.4334 1.281723152 1.028372195 0.946735829 0.842507077 0.853792865 0.977587071 0.848281022 0.784641524 1.06820908 1 13.76615964 -6.786308273 2.602261954 1.133202087 0.869876013 0.638654019 0.082900137 0.160747445 2.236069114 0.018916872 0.026435744 1.64E-07 6.786308273 -0.263326074 IDINMS(ph)GFNETDDLKR ddPTM_HeLa_CUDC101_4h_R1 2 IDINMSGFNETDDLKR 16 1 P13797;P13797-3;A0A0A0MSQ0;P13797-2;H7C4N2 P13797 PLS3 Plastin-3 1 0 IDINMS(1)GFNETDDLKR;IDINMS(0.997)GFNET(0.003)DDLKR ; 93.062 0.0036872 14553900 3820.4 3103.8 2457.7 2615.3 2828.6 3104.4 2687.5 2926 2825.7 2972.4 TRUE FALSE FALSE 3372.578503 3199.424399 2590.570696 2721.963238 2619.939813 3045.188742 2791.157775 3259.084013 2709.22345 2954.720033 1.141420665 1.082818123 0.876756738 0.921225432 0.886696467 1.030618369 0.944643738 1.103009414 0.916913758 1 11.52880572 -6.785999505 24.94924215 1.069850677 0.957819736 0.105349403 0.08548767 202.7852119 205997.3016 0.012994795 0.017082852 1.64E-07 6.785999505 -0.112030941 RT(ph)EARS(ph)SDEENGPPS(ph)SPDLDR ddPTM_HeLa_CUDC101_4h_R1 1 RTEARSSDEENGPPSSPDLDR 21 2 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 3 0 RT(0.936)EARS(0.532)S(0.532)DEENGPPS(0.548)S(0.452)PDLDR 82.339 0.0012628 16835000 1481.3 1409 813.77 1043.6 1341.9 1308.8 971.21 1118.7 1636.3 1212.1 TRUE FALSE FALSE 1307.66426 1452.40962 857.7648677 1086.162519 1242.91071 1283.836821 1008.669895 1246.048286 1568.851021 1204.890375 1.08529729 1.20542885 0.71190283 0.901461694 1.031555016 1.065521683 0.837146612 1.03415905 1.302069511 1 10.23468618 -6.785971086 24.99979536 1.053790896 0.935496398 0.296727089 0.13609405 274.4935819 279730.1781 0.018148659 0.023858104 1.64E-07 6.785971086 -0.118294498 LDTDDLDEIEK ddPTM_HeLa_CUDC101_4h_R1 3 LDTDDLDEIEK 11 0 I3L0H8;Q9NUU7;I3L352;F6QDS0;H3BQK0;Q9UMR2-3;Q9NUU7-2;Q9UMR2-2;Q9UMR2-4;Q9UMR2 I3L0H8 DDX19A;DDX19B ATP-dependent RNA helicase DDX19A;ATP-dependent RNA helicase DDX19B 0 0 ;; ;; 197.21 1.72E-15 265978200 9630.6 7408.4 7546.1 6729.5 8888.8 7823.2 7079.3 7385.3 8260 8514.8 FALSE FALSE TRUE 8501.715667 7636.644023 7954.064992 7003.958097 8233.090933 7673.985494 7352.350972 8226.0127 7919.519304 8464.153591 1.004437783 0.90223363 0.939735427 0.827484759 0.972701032 0.90664535 0.868645742 0.971864772 0.935654017 1 13.04715009 -7.26386357 24.84290595 1.002095622 0.91089017 0.270463089 0.046506889 103.8040682 1063773.557 0.006362922 0.007457165 5.45E-08 7.26386357 -0.091205452 (ac)S(ph)CINLPTVLPGSPSKTR ddPTM_HeLa_CUDC101_4h_R1 1 SCINLPTVLPGSPSKTR 17 1 K7ERV3;P04183;K7ENW5;K7ES52;K7ERJ1 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 0 S(0.848)CINLPT(0.147)VLPGS(0.002)PS(0.002)KTR 116.74 0.00011305 22316000 556.32 736.87 523.25 709.11 1456.1 743.42 967.28 1032.8 849.55 207.32 TRUE FALSE FALSE 491.1090129 759.5720913 551.5384777 738.0305708 1348.686404 729.2405021 1004.588314 1150.369777 814.5311894 206.0868514 2.383019632 3.685689242 2.676242924 3.581162824 6.54426226 3.53851057 4.87458713 5.581965901 3.952368547 1 7.687108652 -6.785857507 0.355571087 0.922136237 5.693545112 0.329928632 1.244697796 0.49484808 0.156024815 0.502290204 0.906418645 1.64E-07 6.785857507 4.771408875 LDVGNFSWGSECCTR ddPTM_HeLa_CUDC101_4h_R1 1 LDVGNFSWGSECCTR 15 0 P62241 P62241 RPS8 40S ribosomal protein S8 0 0 139.19 0.002562 12781000 1002.7 1010.1 666.6 786.39 860.5 901.51 882.36 1016 577.13 592.99 FALSE FALSE TRUE 885.165026 1041.219984 702.6384124 818.4623833 797.0226294 884.3151988 916.3929208 1131.657333 553.3404571 589.4628691 1.501646791 1.766387738 1.191997748 1.388488446 1.352116768 1.500205094 1.554623656 1.919811056 0.938719784 1 9.203257129 -11.46266182 0.240593787 2.14E-16 1.588826872 0.576344701 0.191530969 11.37881951 0.352780002 5.869080697 0.146164428 3.45E-12 11.46266182 1.588826872 SFS(ph)LDPLMER ddPTM_HeLa_CUDC101_4h_R1 2 SFSLDPLMER 10 0 F8VV64;Q63HR2-2;Q63HR2-6;Q63HR2;Q63HR2-4 F8VV64 TNS2 Tensin-2 1 0 S(0.004)FS(0.996)LDPLMER;S(0.004)FS(0.996)LDPLMER ; 160.67 6.10E-05 9354000 8540.8 7002.3 5992.5 6044.2 6967.2 6281 7240.8 6476.9 6321.3 6954.2 TRUE FALSE FALSE 7539.660371 7218.032563 6316.472676 6290.708601 6453.243537 6161.20039 7520.080082 7214.204115 6060.733338 6912.836109 1.090675412 1.044149239 0.913731004 0.910004013 0.933516061 0.891269559 1.087842958 1.043595422 0.876736153 1 12.75506201 -6.785743235 24.00418953 1.044115158 0.961932267 0 0.080915214 156.1665365 154240.3458 0.011226966 0.014759948 1.64E-07 6.785743235 -0.082182891 APIDTS(ph)DVEEK ddPTM_HeLa_CUDC101_4h_R1 1 APIDTSDVEEK 11 0 D6RIY6;Q06265-3;Q06265-4;Q06265;Q06265-2 D6RIY6 EXOSC9 Exosome complex component RRP45 1 0 APIDT(0.046)S(0.954)DVEEK 166.62 2.65E-05 181460000 6760.9 4872.8 4830.2 4170.2 3850.2 4876.8 4991.5 3950.5 4782.7 5483.5 TRUE FALSE FALSE 5968.397551 5022.925192 5091.335223 4340.278781 3566.178417 4783.783165 5184.023827 4400.208952 4585.555082 5450.883898 1.094941236 0.9214882 0.934038464 0.796252289 0.654238557 0.877616044 0.951042789 0.807246867 0.841249817 1 12.41227448 -6.785394058 1.835218547 1.043485818 0.823216606 0.235951812 0.101357833 0.178562281 1.228105657 0.014664264 0.020958941 1.64E-07 6.785394058 -0.220269212 DASVFQDESNMSVLDIPSAT(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 1 DASVFQDESNMSVLDIPSATPEK 23 0 H7BY98;H7C2K9;P21675-6;P21675-7;P21675-3;P21675-5;P21675-9;P21675;P21675-2;P21675-12;P21675-4 H7BY98 TAF1 Transcription initiation factor TFIID subunit 1 1 0 DASVFQDESNMSVLDIPS(0.308)AT(0.692)PEK 109.14 1.39E-05 3125700 2407.2 1770.2 1416.2 1506.2 1299.9 1368.8 1315.2 1581.2 1587.3 1776.7 TRUE FALSE FALSE 2125.031665 1824.737764 1492.764056 1567.629346 1204.008967 1342.692421 1365.927705 1761.197417 1521.870822 1766.132109 1.20321218 1.033183052 0.845216532 0.887605937 0.681720784 0.760244612 0.77340064 0.997205932 0.861697046 1 10.78637755 -6.785150126 3.091483764 1.097057968 0.810938508 0.364821583 0.117338198 0.124818499 2.467261899 0.017495881 0.024243697 1.64E-07 6.785150126 -0.28611946 LDVTILSPSR ddPTM_HeLa_CUDC101_4h_R1 1 LDVTILSPSR 10 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 0 128.6 0.022247 1115100 550.49 496.03 272.14 355.53 296.29 439.39 392.98 212.15 229.95 158.7 FALSE FALSE TRUE 485.9623967 511.3120964 286.8527116 370.0300501 274.433277 431.0093678 408.1373702 236.3002985 220.4713637 157.7560453 3.080467665 3.241156909 1.818331025 2.345583964 1.739605455 2.73212584 2.587142504 1.497884268 1.397546213 1 7.301551481 -6.152341566 15.58405779 2.109355535 2.209135481 0.00173863 0.721633467 20.36905908 2849.413608 0.141190697 0.234147217 7.04E-07 6.152341566 0.099779945 LDVTILSPSRK ddPTM_HeLa_CUDC101_4h_R1 2 LDVTILSPSRK 11 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 0 ; ; 132.32 0.00037344 3428300 1812.78 2053.4 1747.82 1458.17 2307.3 1835.12 1702.08 2317.79 1991.97 1596.98 FALSE FALSE TRUE 1600.288676 2116.66282 1842.312436 1517.640475 2137.095076 1800.118144 1767.729796 2581.637845 1909.860153 1587.481092 1.008067866 1.333346791 1.160525593 0.956005387 1.346217657 1.133946195 1.113543843 1.626247933 1.203075843 1 10.63252369 -1 0.311742457 1.009759533 5.163039731 0.296106776 0.161208962 32.7511406 0.418482971 0.051388398 77.93403207 0.1 1 4.153280198 LDYDEDASAMLK ddPTM_HeLa_CUDC101_4h_R1 3 LDYDEDASAMLK 12 0 P50502;H7C3I1;Q8NFI4 P50502 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 0 0 ;; ;; 177.76 1.32E-15 0 9248.4 8226.1 8431.5 8169 10402.4 9702.2 8541.7 8168.2 9692.7 9488.3 FALSE FALSE TRUE 8164.316572 8479.536391 8887.332394 8502.167129 9635.035677 9517.1467 8871.15623 9098.034871 9293.162803 9431.86317 0.865610158 0.899030895 0.942266892 0.901430288 1.021541079 1.009042066 0.940551837 0.964606325 0.985294489 1 13.20332707 -5.768235684 24.99916022 0.930218019 0.982629846 0.2579969 0.042814445 219.4360189 807164.2308 0.008286084 0.015265385 1.71E-06 5.768235684 0.052411827 KELEEVS(ph)PETPVVPATTQR ddPTM_HeLa_CUDC101_4h_R1 1 KELEEVSPETPVVPATTQR 19 1 Q15149 Q15149 PLEC Plectin 1 0 KELEEVS(0.991)PET(0.009)PVVPATTQR 72.122 0.0065474 11901000 2388.6 2015.4 2149.5 2218.7 2270.1 2168.4 1884.7 2213.7 1951.9 2109.3 TRUE FALSE FALSE 2108.611929 2077.492085 2265.708472 2309.188176 2102.639246 2127.041383 1957.39351 2465.69866 1871.441856 2096.75379 1.005655475 0.990813559 1.080579171 1.101315847 1.002806937 1.014444993 0.93353522 1.175960035 0.892542494 1 11.03394175 -6.784947929 24.96664241 1.001855977 1.044455904 0.187179627 0.069899376 388.940887 413063.1454 0.009252185 0.012163434 1.64E-07 6.784947929 0.042599927 LDYWEDDLR ddPTM_HeLa_CUDC101_4h_R1 2 LDYWEDDLR 9 0 E9PEM5;A0A494C1L5;P50851-2;P50851;H0YAC6;A0A494BZW2;Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9 E9PEM5 LRBA;NBEA Lipopolysaccharide-responsive and beige-like anchor protein;Neurobeachin 0 0 ; ; 172.25 1.46E-06 11107800 7706.7 6330.1 6044.6 5623.7 6659.9 6909.1 6723.4 6374.8 6767.6 6498.6 FALSE FALSE TRUE 6803.332309 6525.122878 6371.38936 5853.058794 6168.612445 6777.320429 6982.72379 7100.481464 6488.636664 6459.946038 1.053156213 1.010089378 0.986291421 0.906053821 0.954901544 1.049129573 1.080926025 1.099154919 1.00444131 1 12.6573064 -4.934357343 3.677295967 1.008096155 1.089531022 0.474055792 0.040190193 0.20878654 5.672766857 0.006933224 0.022947037 1.16E-05 4.934357343 0.081434867 LEAALGEAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LEAALGEAKK 10 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 ; LEAALGEAK(1)K;LEAALGEAK(1)K 143.89 0.00042686 5323600 5434.7 3104.6 2472.6 2510.4 7373.3 5268.3 6112.3 5883.8 5277.4 2959.3 FALSE TRUE FALSE 4797.652704 3200.249046 2606.276235 2612.784963 6829.386349 5167.815955 6348.053458 6553.588009 5059.863338 2941.697952 1.630912753 1.087891788 0.885976833 0.888189408 2.321579734 1.756745947 2.157955562 2.227824921 1.720048564 1 11.52243341 -5.756960427 24.99973616 1.227426497 2.093358649 0.690443598 0.299330594 56.28126234 314135.6563 0.047204606 0.091899481 1.75E-06 5.756960427 0.865932152 EGTAPS(ph)ENGETK ddPTM_HeLa_CUDC101_4h_R1 3 EGTAPSENGETK 12 0 Q15651;A0A087WZE9 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 0 EGT(0.022)APS(0.975)ENGET(0.003)K;EGT(0.008)APS(0.992)ENGETK;EGT(0.238)APS(0.762)ENGETK ;; 215.09 7.82E-24 104541000 15321.4 9733.6 12868.1 13041.6 9538.6 11521.8 11162.6 9729.9 12180.5 13872 TRUE FALSE FALSE 13525.44872 10033.48068 13563.78841 13573.49282 8834.956482 11302.04086 11593.14522 10837.51249 11678.41463 13789.48873 0.980852081 0.727618034 0.983632438 0.984336192 0.640702252 0.819612756 0.840723355 0.785925621 0.846907008 1 13.75128135 -6.784916695 0.529970414 1.004399282 0.784607122 0.09869112 0.111613596 0.642746791 0.389733202 0.030931971 0.054794635 1.64E-07 6.784916695 -0.21979216 LEAEEAIEVDHSHDLDIF ddPTM_HeLa_CUDC101_4h_R1 1 LEAEEAIEVDHSHDLDIF 18 0 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 0 0 78.69 0.0099387 2080700 1025 1218.2 798.45 671.12 1058.8 1152.9 1028.4 875.21 893.26 892.2 FALSE FALSE TRUE 904.8510538 1255.731298 841.6166222 698.4911744 980.6944334 1130.910353 1068.065732 974.8403687 856.4394447 886.8931547 1.020248098 1.415876638 0.948949282 0.787570826 1.1057639 1.275137087 1.204277795 1.099163257 0.965662482 1 9.792616501 -1 0.17023207 0.982657369 1.820939912 0.090369891 0.16326848 106.2556458 1.116944347 0.252865624 22.81524 0.1 1 0.838282543 LEAEIATYR ddPTM_HeLa_CUDC101_4h_R1 1 LEAEIATYR 9 0 P05783;F8VZY9;CON__P05784 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 134.26 0.014584 12401000 2647 2628.9 2308.4 2507.5 2410.7 2141.5 2160.6 2470.8 2365.8 2262.8 FALSE FALSE TRUE 2336.722673 2709.893293 2433.199087 2609.766688 2232.867464 2100.654455 2243.935066 2752.065885 2268.280723 2249.340765 1.038847786 1.204750003 1.081738758 1.160236247 0.992676387 0.933897828 0.997596763 1.22349887 1.008420226 1 11.13528652 -7.504253323 13.55835095 1.01712418 1.078316099 0.114580832 0.088804082 1.973613595 1434.685853 0.015997888 0.017287944 3.13E-08 7.504253323 0.061191919 LEAMCFDGVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 LEAMCFDGVKR 11 1 X6RAC9;P47813 X6RAC9 EIF1AX "Eukaryotic translation initiation factor 1A, X-chromosomal" 0 1 ; LEAMCFDGVK(1)R;LEAMCFDGVK(1)R 140.78 0.00031555 1157070 0 0 154.14 0 146.03 283.88 252.036 334.74 201.803 0 FALSE TRUE FALSE 0 0 162.4732746 0 135.2576578 278.465462 261.7571129 372.8454485 193.4845949 0 0 RLPS(ph)SPASPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 RLPSSPASPSPK 12 1 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0;Q9H4G0-4;H7C2K6;X6RC15 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 2 0 RLPS(0.695)S(0.329)PAS(0.014)PS(0.962)PK 94.339 0.031935 18726000 5805.9 4874.3 4270.8 4848.5 4487.1 4952.4 4624.2 4424 4316.1 4794.3 TRUE FALSE FALSE 5125.341203 5024.471406 4501.692366 5046.242787 4156.095573 4857.941221 4802.556943 4927.610278 4138.188531 4765.78329 1.075445712 1.054280293 0.94458604 1.058848563 0.872069777 1.019337415 1.007716182 1.03395601 0.868312359 1 12.21849764 -6.784903748 24.99126025 1.038021595 0.989432431 0 0.074650203 321.2283426 342130.4393 0.008618304 0.011330377 1.64E-07 6.784903748 -0.048589164 NPQMPQYSSPQPGS(ph)ALSPR ddPTM_HeLa_CUDC101_4h_R1 1 NPQMPQYSSPQPGSALSPR 19 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 NPQMPQYS(0.042)S(0.042)PQPGS(0.464)ALS(0.453)PR 126.14 9.44E-05 5565500 836.46 689.75 601.99 447.78 653.09 620.42 599.06 442.6 626.88 792.79 TRUE FALSE FALSE 738.4114268 711.0003799 634.5354003 466.0424039 604.9128518 608.5865222 622.1659449 492.9837949 601.0397411 788.0744498 0.936981813 0.902199507 0.805171898 0.591368498 0.767583382 0.77224496 0.789476102 0.625554851 0.762668732 1 9.622188118 -6.784888146 2.116135047 0.969898393 0.719096118 0.439079639 0.090588658 0.106174859 0.974697086 0.01068165 0.015118693 1.64E-07 6.784888146 -0.250802275 LEAVSHTSDMHR ddPTM_HeLa_CUDC101_4h_R1 1 LEAVSHTSDMHR 12 0 Q01518-2;Q01518;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9;Q5T0R8;Q5T0S3 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 0 0 75.739 0.033362 5126100 2254.1 2094.9 1784.1 1796.8 2403.3 2077.8 2187.8 1856.7 1883.4 1727.2 FALSE FALSE TRUE 1989.877815 2159.441386 1880.553843 1870.08127 2226.013347 2038.169427 2272.184179 2068.059223 1805.765455 1716.926538 1.158976678 1.257736623 1.09530245 1.089202846 1.296510537 1.187103456 1.323402096 1.204512353 1.051742993 1 10.7456126 -13.5228787 0.104405977 0.287036309 1.349157673 0.530935729 0.06974598 55.5793966 0.430156002 8.488901252 0.504576376 3.00E-14 13.5228787 1.062121365 GFGFVCFS(ph)SPEEATK ddPTM_HeLa_CUDC101_4h_R1 2 GFGFVCFSSPEEATK 15 0 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;Q4VXU2;A0A6I8PS38;A0A6I8PLA1;H0YB86;H0Y5F5;B1ANR0;Q13310-2;Q13310;Q13310-3;H0YEU6 P11940;H0Y5F5 PABPC1;PABPC3;PABPC1L;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4 1 0 GFGFVCFS(0.549)S(0.444)PEEAT(0.007)K;GFGFVCFS(0.604)S(0.396)PEEATK ; 133.15 0.00060672 28146000 4147.1 3572.1 2992.3 3259.3 3739 3827.6 3040.6 2849.7 4157.6 3572.6 TRUE FALSE FALSE 3660.983225 3682.152167 3154.072789 3392.228342 3463.181419 3754.594907 3157.876961 3174.098329 3986.221968 3551.350016 1.030870854 1.03683167 0.888133463 0.955194032 0.975173217 1.057230318 0.889204653 0.893772316 1.122452574 1 11.79415184 -6.784189068 24.99999563 1.016654264 0.947860263 0.389844462 0.058970134 215.3977872 236703.3362 0.008074841 0.010616499 1.64E-07 6.784189068 -0.068794002 S(ph)PVGKS(ph)PPSTGSTYGSSQK ddPTM_HeLa_CUDC101_4h_R1 2 SPVGKSPPSTGSTYGSSQK 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 0 S(1)PVGKS(0.914)PPS(0.055)T(0.016)GS(0.011)T(0.003)YGS(0.001)SQK;S(0.998)PVGKS(0.991)PPS(0.003)T(0.004)GS(0.002)T(0.001)YGSSQK ; 86.617 0.0049636 75440000 6462.3 4772.7 3839.6 4396.9 3355.2 4520.8 3563.3 2852.4 5179.9 5570.5 TRUE FALSE FALSE 5704.79899 4919.74123 4047.18039 4576.224587 3107.693581 4434.573272 3700.737675 3177.105686 4966.38233 5537.366418 1.03023686 0.888462287 0.730885422 0.826426182 0.561222311 0.800845192 0.668320894 0.573757531 0.896885262 1 12.43498428 -6.783812373 1.317323499 1.017257007 0.676118335 0.688679571 0.086651955 0.123474764 0.430287644 0.013304041 0.019631465 1.65E-07 6.783812373 -0.341138672 LEDGPK(ac)FLK ddPTM_HeLa_CUDC101_4h_R1 1 LEDGPKFLK 9 1 Q5VTE0;P68104;A0A087WVQ9;A0A087WV01 Q5VTE0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 0 1 LEDGPK(1)FLK 113.18 0.0032702 481720 2150.7 1348.6 1290.8 1061.8 2825.6 2425.6 3047.4 2059.2 3643.3 2597.7 FALSE TRUE FALSE 1898.598206 1390.148768 1360.584552 1105.104793 2617.161117 2379.335721 3164.939239 2293.611004 3493.121632 2582.248765 0.735249923 0.53834812 0.526899101 0.427962173 1.013520135 0.921420025 1.225652339 0.888222326 1.352744042 1 11.33441228 -5.579604886 24.99995173 0.784417004 1.022214312 0.173013113 0.263688232 104.6444257 46117.68162 0.034279058 0.068558122 2.63E-06 5.579604886 0.237797308 VQAGPGS(ph)PRR ddPTM_HeLa_CUDC101_4h_R1 2 VQAGPGSPRR 10 1 I3L4F6;I3L0U5;Q6PK04 I3L4F6 CCDC137 Coiled-coil domain-containing protein 137 1 0 VQAGPGS(1)PRR;VQAGPGS(1)PRR ; 73.219 0.031131 17468900 3392.3 2591.1 4088.3 3890.6 4184.3 3316.1 3327.4 2714.9 3333.1 2925.8 TRUE FALSE FALSE 2994.659736 2670.92872 4309.325864 4049.275485 3875.632525 3252.850917 3455.738933 3023.953242 3195.708207 2908.397211 1.029659816 0.918350736 1.481684086 1.392270447 1.332566442 1.118434203 1.188193593 1.03973186 1.098786711 1 11.5060086 -6.782119699 24.99991116 1.007223213 1.258641275 0.474146661 0.127455865 156.1973741 188822.4737 0.020912245 0.027500735 1.65E-07 6.782119699 0.251418063 LEDLVCDVVDR ddPTM_HeLa_CUDC101_4h_R1 3 LEDLVCDVVDR 11 0 O43776 O43776 NARS "Asparagine--tRNA ligase, cytoplasmic" 0 0 ;; ;; 194.54 2.25E-15 6125600 3763.61 2783.85 2458.25 2678.88 2896.27 2858.15 2732.93 2317.68 3342.51 1470.03 FALSE FALSE TRUE 3322.445341 2869.617119 2591.150431 2788.136306 2682.617932 2803.635551 2838.340026 2581.515323 3204.730323 1461.286196 2.273644512 1.96376119 1.773198459 1.908001535 1.83579229 1.918608113 1.942357379 1.766604878 2.193088754 1 10.51302305 -9.428486226 1.124247608 0.993074771 1.947894377 0 0.388174549 0.159483843 0.356380697 0.120336373 0.029349966 3.73E-10 9.428486226 0.954819605 SLS(ph)DSESDDSKSK ddPTM_HeLa_CUDC101_4h_R1 1 SLSDSESDDSKSK 13 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 S(0.402)LS(0.598)DSESDDSKSK 120.9 0.010633 18155000 3385.4 2963.8 4287 4357.7 5635.1 3593.4 3708 1958.8 5132.9 3095.8 TRUE FALSE FALSE 2988.568544 3055.111165 4518.768187 4535.425842 5219.4099 3524.861882 3851.018802 2181.781874 4921.319689 3077.386044 0.971138655 0.992761753 1.468378722 1.473791646 1.696053022 1.145407769 1.251392821 0.708972434 1.599188278 1 11.58748972 -6.781920778 24.06715486 0.98646943 1.309028802 0 0.311186513 149.5489242 175730.3915 0.039472305 0.051916076 1.65E-07 6.781920778 0.322559373 T(ph)QTPPVS(ph)PAPQPTEER ddPTM_HeLa_CUDC101_4h_R1 1 TQTPPVSPAPQPTEER 16 0 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 2 0 T(0.993)QT(0.007)PPVS(0.878)PAPQPT(0.122)EER 161.99 5.91E-11 0 2934 2122.8 2007.7 1587.3 1915.1 1967.5 1742.9 1323 1960.1 2562.1 TRUE FALSE FALSE 2590.080968 2188.200952 2116.242335 1652.036955 1773.826888 1929.973216 1810.124237 1473.604972 1879.303848 2546.860515 1.01697009 0.859175812 0.830921961 0.648656236 0.696475868 0.757785204 0.710727669 0.578596654 0.73789037 1 11.31450423 -6.781657771 1.420629367 1.009462314 0.684377217 0.460125068 0.099974719 0.083645721 0.340436154 0.008907904 0.013046891 1.65E-07 6.781657771 -0.325085097 LEDTENWLYEDGEDQPK ddPTM_HeLa_CUDC101_4h_R1 2 LEDTENWLYEDGEDQPK 17 0 A0A087WYC1;P34932 A0A087WYC1 HSPA4 Heat shock 70 kDa protein 4 0 0 ; ; 247.93 3.47E-55 113487000 12397.7 11561.3 10647.4 10529.7 11723.3 10568.5 10468.1 10852.3 11436.2 10507.8 FALSE FALSE TRUE 10944.4604 11917.48995 11223.03065 10959.14668 10858.49552 10366.92347 10871.85812 12087.68197 10964.795 10445.29914 1.047788125 1.140942906 1.074457562 1.049194143 1.039558118 0.992496561 1.040837412 1.157236553 1.049734895 1 13.35056619 -8.431980537 1.086007371 1.007223869 1.064428411 0.084838506 0.048329551 0.523896668 1.262780952 0.015219008 0.009591 3.70E-09 8.431980537 0.057204542 LEDTK(ac)LIK ddPTM_HeLa_CUDC101_4h_R1 2 LEDTKLIK 8 1 E7ENZ3;B7ZAR1;E9PCA1;P48643-2;P48643 E7ENZ3 CCT5 T-complex protein 1 subunit epsilon 0 1 ; LEDTK(1)LIK;LEDTK(1)LIK 118.26 0.0016137 1502970 1433.59 1368.4 1473.67 1365.92 1565.06 1443.72 1490.3 1534.56 1594.97 1446.2 FALSE TRUE FALSE 1265.546753 1410.558782 1553.341058 1421.628122 1449.608642 1416.183446 1547.78137 1709.248107 1529.224662 1437.597938 0.880320373 0.981191434 1.080511468 0.988891319 1.008354703 0.985103977 1.076644122 1.188961157 1.063735987 1 10.48944453 -1.000000007 0.473554064 0.952844678 7.125056798 0.407747267 0.059997589 46.43491683 0.475725803 0.012799507 283.1758514 0.099999998 1.000000007 6.17221212 LESS(ph)EGEIIQTVDR ddPTM_HeLa_CUDC101_4h_R1 2 LESSEGEIIQTVDR 14 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 LES(0.341)S(0.659)EGEIIQTVDR;LES(0.102)S(0.898)EGEIIQTVDR ; 244.67 9.20E-56 15456600 3165.7 2820.3 2148.17 2210.94 2369.48 2468.44 2385.7 3345.5 3012.5 2756.7 TRUE FALSE FALSE 2794.621445 2907.1901 2264.306568 2301.11169 2194.688181 2421.35862 2477.717248 3726.338197 2888.323475 2740.303026 1.019822048 1.060900956 0.826297875 0.839728916 0.800892515 0.883609804 0.904176372 1.359827056 1.054016088 1 11.42011972 -6.781412576 24.98922001 1.013487491 0.921454748 0.08113639 0.151090349 482.4557549 603616.7962 0.023645323 0.031097839 1.65E-07 6.781412576 -0.092032743 LEEDDGDVAMSDAQDGPR ddPTM_HeLa_CUDC101_4h_R1 2 LEEDDGDVAMSDAQDGPR 18 0 E9PQA4;E9PIN3;Q9UBU9-2;Q9UBU9 E9PQA4 NXF1 Nuclear RNA export factor 1 0 0 ; ; 287.54 2.12E-103 27186000 7281.6 6376.1 6280.8 6335.2 6130 6318.6 5828.2 5347.7 5950.3 6156.1 FALSE FALSE TRUE 6428.061886 6572.540083 6620.359046 6593.576839 5677.802113 6198.083233 6052.995626 5956.460552 5705.026115 6119.483243 1.050425605 1.074035147 1.081849363 1.077472815 0.927823786 1.01284422 0.989135093 0.973360056 0.932272528 1 12.57919412 -5.768083561 24.9999979 1.036742026 0.979390626 0.287373384 0.046308914 136.5452365 513778.8047 0.005744526 0.01058975 1.71E-06 5.768083561 -0.0573514 LEEEDEDEEDGESGCTFLVGLIQK ddPTM_HeLa_CUDC101_4h_R1 2 LEEEDEDEEDGESGCTFLVGLIQK 24 0 P17655;P17655-2 P17655 CAPN2 Calpain-2 catalytic subunit 0 0 ; ; 210.66 7.39E-28 152370000 16183 12999.5 12252.8 13055.7 15188.6 15370.8 14026.3 11975.7 14060.6 4147 FALSE FALSE TRUE 14286.05327 13399.99919 12915.22343 13588.16788 14068.16724 15077.6276 14567.29909 13338.96528 13481.01612 4122.33346 3.465525876 3.250585941 3.132988526 3.2962321 3.412670852 3.657546811 3.533750783 3.235780271 3.270239113 1 12.0092455 -9.284020298 0.608178216 0.625166794 3.428857573 0.009650091 0.720620564 0.149612876 0.079424577 0.234505703 0.03969592 5.20E-10 9.284020298 2.803690779 YALYDAS(ph)FETK ddPTM_HeLa_CUDC101_4h_R1 1 YALYDASFETK 11 0 P60981;P60981-2;F6RFD5 P60981 DSTN Destrin 1 0 YALYDAS(0.918)FET(0.082)K 84.718 0.032307 4674600 1722.8 1436.1 1352.8 1018.5 1249.3 1561.3 1182.6 1308.4 1039.9 1630.5 TRUE FALSE FALSE 1520.855996 1480.344539 1425.93646 1060.038832 1157.141628 1531.520804 1228.213278 1457.342967 997.0348819 1620.801713 0.938335629 0.913340927 0.879772305 0.654021293 0.713931642 0.944915588 0.75778133 0.899149449 0.615149203 1 10.66249189 -6.781210071 2.137807186 0.970005179 0.795744914 0 0.138594661 0.196472198 1.841291951 0.013798909 0.019544312 1.65E-07 6.781210071 -0.174260265 LEEEQIILEDQNCK ddPTM_HeLa_CUDC101_4h_R1 2 LEEEQIILEDQNCK 14 0 P35579 P35579 MYH9 Myosin-9 0 0 ; ; 178.58 5.78E-07 11200600 2296.7 2107.6 1833.62 2033.36 2010.76 2104.29 1825.99 1810.89 2082.76 1861.39 FALSE FALSE TRUE 2027.484308 2172.532658 1932.751044 2116.28921 1862.430241 2064.154174 1896.419046 2017.034398 1996.907751 1850.318369 1.095748894 1.174139918 1.044550535 1.143743285 1.006545831 1.115567033 1.024914997 1.090101266 1.07922387 1 10.85355781 -9.167416114 0.999720392 1.001749553 1.086056445 0.035761961 0.054286199 0.482617597 0.893420837 0.027469509 0.008517127 6.80E-10 9.167416114 0.084306891 S(ph)Y(ph)LEKVATGK ddPTM_HeLa_CUDC101_4h_R1 1 SYLEKVATGK 10 1 P51665 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 2 0 S(1)Y(1)LEKVATGK 97.163 0.001369 0 866.85 761.45 890.13 903.89 1122.8 1103.3 972.71 461.76 874.33 776.24 TRUE FALSE FALSE 765.2391571 784.909372 938.2531203 940.7545411 1039.973281 1082.256391 1010.227751 514.3248919 838.2897473 771.62289 0.991726875 1.01721888 1.215947754 1.21918952 1.347774016 1.402571651 1.309224705 0.666549552 1.086398237 1 9.591752131 -6.780812598 5.132086687 0.996694266 1.217280685 0.145284123 0.19269343 0.199548201 14.11014408 0.029554274 0.040094963 1.66E-07 6.780812598 0.220586419 LSSSTVAISYS(ph)PDR ddPTM_HeLa_CUDC101_4h_R1 4 LSSSTVAISYSPDR 14 0 Q96T17;Q96T17-2;Q96T17-5 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 LSSSTVAISYS(1)PDR;LSSSTVAISYS(1)PDR;LSSSTVAIS(0.001)YS(0.999)PDR;LSSSTVAISYS(1)PDR ;;; 242.07 3.02E-44 306662000 5565.96 4461.19 4062.33 4403.65 4687.27 4579.34 4023.98 4007.76 4933.15 4288.83 TRUE FALSE FALSE 4913.526606 4598.633976 4281.951848 4583.249881 4341.49943 4491.996719 4179.186257 4463.987198 4729.803469 4263.319848 1.152511841 1.078650943 1.004370303 1.075042466 1.018337724 1.053638216 0.98026571 1.047068331 1.109417927 1 12.05776158 -6.780311785 24.56564528 1.074529156 1.030156925 0.266336024 0.043607301 341.7279855 444816.0131 0.009823006 0.012923236 1.66E-07 6.780311785 -0.044372231 S(ph)PGSSWQEYGPSDTCGSR ddPTM_HeLa_CUDC101_4h_R1 4 SPGSSWQEYGPSDTCGSR 18 0 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 S(0.999)PGS(0.001)SWQEYGPSDTCGSR;S(0.995)PGS(0.005)SWQEYGPSDTCGSR;S(0.996)PGS(0.002)S(0.002)WQEYGPSDTCGSR;S(1)PGSSWQEYGPSDTCGSR ;;; 229.22 9.61E-34 48268000 2496.67 2161.56 2673.11 2597.7 2638.01 2440.28 2610.2 2353.32 3107.22 2373.79 TRUE FALSE FALSE 2204.014127 2228.155102 2817.626412 2703.645434 2443.409258 2393.735725 2710.876288 2621.212436 2979.139076 2359.670592 0.934034664 0.944265318 1.194076166 1.145772399 1.035487439 1.014436394 1.148836748 1.110838286 1.262523289 1 11.20436976 -6.780187266 24.97794062 0.966135483 1.104221612 0 0.107294783 126.2359562 168184.6438 0.009282871 0.012211505 1.66E-07 6.780187266 0.138086129 GYSFSLT(ph)TFSPSGK ddPTM_HeLa_CUDC101_4h_R1 1 GYSFSLTTFSPSGK 14 0 P25787;A0A024RA52;H3BT36 P25787 PSMA2 Proteasome subunit alpha type-2;Proteasome subunit alpha type 1 0 GYSFS(0.013)LT(0.935)T(0.052)FSPSGK 131.79 0.00020368 0 1415.5 1384.2 899.69 935.59 1053.7 1394.4 1313.1 1171.9 906.89 1273 TRUE FALSE FALSE 1249.577236 1426.845561 948.3299628 973.7474042 975.9706503 1367.804143 1363.746707 1305.304359 869.5076103 1265.428139 0.987473881 1.127559533 0.749414315 0.769500356 0.771257269 1.080902266 1.077695892 1.031512038 0.687125237 1 10.30540987 -6.779585786 24.99964266 1.00393018 0.915463661 0 0.158986016 463.639381 638737.3623 0.021614395 0.02843752 1.66E-07 6.779585786 -0.08846652 LEESVALR ddPTM_HeLa_CUDC101_4h_R1 2 LEESVALR 8 0 E9PPC8;E9PK68;Q08209-4;Q08209-3;Q08209-2;Q08209 E9PPC8 PPP3CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 0 0 ; ; 117.16 0.0017873 0 5507.2 5226.6 4870.3 4872.9 5275.5 4766.2 4417.4 4658.6 4765.5 5068.6 FALSE FALSE TRUE 4861.654364 5387.625351 5133.60315 5071.637924 4886.336875 4675.292676 4587.780598 5188.916193 4569.064073 5038.451742 0.964910376 1.069301767 1.018885049 1.006586583 0.969809204 0.927922488 0.910553645 1.029863232 0.906838907 1 12.29876476 -5.552119791 5.574205083 0.994483563 0.951025241 0.113215166 0.048290391 0.226495928 19.82399149 0.0059756 0.012335901 2.80E-06 5.552119791 -0.043458322 LEEVLTNK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LEEVLTNKK 9 1 Q5TA02;P78417-3;P78417 Q5TA02 GSTO1 Glutathione S-transferase omega-1 0 1 ; LEEVLTNK(1)K;LEEVLTNK(1)K 200.86 1.80E-07 6400200 4922 3490.75 3030.59 2744.44 3854.04 3594.9 3836.91 3468.63 3931.4 3338 FALSE TRUE FALSE 4345.050621 3598.29587 3194.432862 2856.370126 3569.735148 3526.333272 3984.900904 3863.484819 3769.346028 3318.145428 1.309481672 1.084429826 0.962716352 0.860833314 1.075822391 1.06274223 1.20094221 1.16435066 1.135979754 1 11.6961614 -7.011593173 24.82261533 1.148818418 1.051237821 0.120608176 0.113206463 1020.295936 2184600.149 0.024471011 0.0309186 9.74E-08 7.011593173 -0.097580598 LEFLHK ddPTM_HeLa_CUDC101_4h_R1 1 LEFLHK 6 0 Q15393;Q15393-3 Q15393 SF3B3 Splicing factor 3B subunit 3 0 0 74.717 0.0027418 0 6076.4 5953.7 5302.3 5415.8 5142.4 5685.9 5052.6 5462.1 5704.2 5227.7 FALSE FALSE TRUE 5364.133603 6137.12644 5588.958377 5636.679733 4763.055397 5577.450931 5247.480475 6083.883385 5469.070462 5196.605408 1.032238006 1.180987579 1.075501782 1.084684961 0.916570535 1.073287366 1.009790058 1.170741842 1.052431353 1 12.3433538 -7.503320381 15.13038785 1.014216534 1.068132904 0.068361094 0.071872903 3.544429779 2742.706118 0.012264319 0.01323883 3.14E-08 7.503320381 0.05391637 LITSEEERS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 2 LITSEEERSPAK 12 1 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LITSEEERS(1)PAK;LITSEEERS(1)PAK ; 159.12 0.00069883 164511000 4010 3467.6 3121.5 2846 3165.1 2962.1 2727.3 2675.2 3769.2 3929.5 TRUE FALSE FALSE 3539.953879 3574.432646 3290.257732 2962.072181 2931.616879 2905.602878 2832.492875 2979.733954 3613.831981 3906.127159 0.906256692 0.915083534 0.842332468 0.758314325 0.750517523 0.743857729 0.72514098 0.762835881 0.925170081 1 11.9315232 -6.779248317 0.537972954 0.9814019 0.7197862 0.902447056 0.028873624 0.147248204 0.091549261 0.008434265 0.014972423 1.66E-07 6.779248317 -0.2616157 LEGDLTGPSVDVEVPDVELECPDAK ddPTM_HeLa_CUDC101_4h_R1 2 LEGDLTGPSVDVEVPDVELECPDAK 25 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 168.86 4.46E-13 23017000 10871.1 10938.8 8017.7 8594.6 10140.4 10076.7 9743.5 9797.6 10610.8 9296.7 FALSE FALSE TRUE 9596.806138 11275.81146 8451.161114 8945.124937 9392.362895 9884.503736 10119.31006 10912.91918 10173.41833 9241.402815 1.038457724 1.220140674 0.914488989 0.967940162 1.016335191 1.069589102 1.094997184 1.18087258 1.100852169 1 13.17389615 -4.454679071 1.413430782 1.022706405 1.209662385 0.221235233 0.078366036 0.823057036 1.890848402 0.010789392 0.195527331 3.51E-05 4.454679071 0.18695598 LEGDLTGPSVGVEVPDVELECPDAK ddPTM_HeLa_CUDC101_4h_R1 2 LEGDLTGPSVGVEVPDVELECPDAK 25 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 183.46 5.34E-17 15044200 15855.1 15742.6 12607.5 12734.1 15708.1 15421.9 14123.5 14598.4 14638.3 13212 FALSE FALSE TRUE 13996.58921 16227.61085 13289.09959 13253.45164 14549.34476 15127.75295 14668.24813 16260.22285 14034.90308 13133.41444 1.065723562 1.235597257 1.011854126 1.009139832 1.107811288 1.151852249 1.116864788 1.238080388 1.068640843 1 13.68095442 -1 0.125215329 0.969955427 1.660400695 0.279041295 0.070360727 69.26223889 0.590524686 0.26905853 8.426134408 0.1 1 0.690445268 SVVS(ph)DLEADDVKGS(ph)VPLSSSPPATHFPDETEITNPVPK ddPTM_HeLa_CUDC101_4h_R1 1 SVVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK 38 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 2 0 S(0.177)VVS(0.745)DLEADDVKGS(0.279)VPLS(0.228)S(0.218)S(0.208)PPAT(0.137)HFPDET(0.006)EIT(0.002)NPVPK 52.718 0.0039406 12736000 1254 1046.4 1302.4 1062.5 1752.2 1229.5 1115.9 962.89 1024.7 1176.3 TRUE FALSE FALSE 1107.008021 1078.638344 1372.811684 1105.833343 1622.943697 1206.049336 1158.940637 1072.501505 982.4614323 1169.303315 0.946724435 0.922462401 1.174042411 0.945719839 1.387957834 1.031425568 0.991137733 0.917214115 0.840210935 1 10.1914335 -6.778658476 24.99992174 0.970210676 1.077215179 0.19963621 0.133773229 354.7612142 515066.3285 0.019992823 0.026309745 1.66E-07 6.778658476 0.107004503 YLGPSNS(ph)QVDFLLR ddPTM_HeLa_CUDC101_4h_R1 1 YLGPSNSQVDFLLR 14 0 H7BYZ6 H7BYZ6 GPR75-ASB3 1 0 YLGPS(0.17)NS(0.83)QVDFLLR 82.261 0.02288 798930000 1790.4 3846 2454.5 4209.4 6339.2 5505.6 4918.3 2743.9 5172.5 1583.1 TRUE FALSE FALSE 1580.532026 3964.490701 2587.197694 4381.077527 5871.569845 5400.589853 5108.000479 3056.254485 4959.287361 1573.683651 1.004351812 2.519242479 1.644039253 2.783963298 3.731099222 3.431814171 3.245887746 1.942102203 3.151387738 1 10.61992984 -6.778475207 1.035215852 0.978098286 3.112513235 0.116485205 0.889069998 0.180266084 0.384988171 0.108207797 0.165847872 1.67E-07 6.778475207 2.134414948 LEGGEVDLK(ac)GPK ddPTM_HeLa_CUDC101_4h_R1 2 LEGGEVDLKGPK 12 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 1 ; LEGGEVDLK(1)GPK;LEGGEVDLK(1)GPK 176.8 1.01E-06 1206040 1440.89 793.27 601.18 628.85 1762.23 1639.21 1527.46 1464.85 1469.34 673.27 FALSE TRUE FALSE 1271.991058 817.7097084 633.6816093 654.4972211 1632.233804 1607.9448 1586.374644 1631.602603 1408.773183 669.2653601 1.900578058 1.22180193 0.946831626 0.977933806 2.438843994 2.402551957 2.370322354 2.437900869 2.104954577 1 9.386434535 -5.749775091 24.98293946 1.350390436 2.408695447 0.669333342 0.362799984 108.6117084 232626.4319 0.056950821 0.113148535 1.78E-06 5.749775091 1.058305011 SEVIEDS(ph)DVETVSEK ddPTM_HeLa_CUDC101_4h_R1 2 SEVIEDSDVETVSEK 15 0 Q56NI9;E5RFE4 Q56NI9 ESCO2 N-acetyltransferase ESCO2 1 0 SEVIEDS(1)DVETVSEK;SEVIEDS(0.947)DVET(0.053)VSEK ; 193.77 3.95E-16 6980800 3790.1 3207 3679.4 3640.91 3872.1 3615.1 3674.6 3133.8 2677.04 3382.9 TRUE FALSE FALSE 3345.830223 3305.803869 3878.319494 3789.402047 3586.462897 3546.147991 3816.330553 3490.539125 2566.691278 3362.77836 0.994960079 0.983057316 1.153308092 1.12686643 1.066517776 1.054529205 1.134874245 1.037992621 0.763265075 1 11.71543798 -6.778091037 24.99993179 0.996461324 1.095684219 0.41369615 0.081410308 102.3856247 153716.0937 0.005360512 0.007055942 1.67E-07 6.778091037 0.099222895 S(ph)LSDSESDDSKSK ddPTM_HeLa_CUDC101_4h_R1 1 SLSDSESDDSKSK 13 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 S(0.726)LS(0.257)DS(0.016)ES(0.001)DDSKSK 169.4 2.64E-06 21360000 1464.9 1223.9 1929.8 2108.7 2520.9 1544.4 1460.9 829.54 2216.8 1338.8 TRUE FALSE FALSE 1293.186643 1261.606908 2034.130825 2194.701901 2334.938229 1514.943143 1517.247402 923.9714805 2125.422566 1330.836758 0.971709441 0.947980209 1.528460056 1.649114279 1.754488832 1.138338819 1.140070255 0.694278599 1.597057305 1 10.3781179 -6.778061693 24.97713648 0.983367725 1.336193854 0 0.343191244 255.0241519 383205.17 0.048000081 0.063181394 1.67E-07 6.778061693 0.352826129 IRAENGTGSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 IRAENGTGSSPR 12 1 M0R102;M0R050;Q9NQT4 M0R102 EXOSC5 Exosome complex component RRP46 1 0 IRAENGTGS(0.114)S(0.886)PR 105.66 0.034601 11887000 1753.4 1389.6 1876.4 1886.7 2020.5 1502.7 1784 1482.2 1881.9 1404.8 TRUE FALSE FALSE 1547.86911 1432.411929 1977.84386 1963.647781 1871.45174 1474.038501 1852.809478 1650.927657 1804.327285 1396.444187 1.108436072 1.025756663 1.416342936 1.40617706 1.340155058 1.055565639 1.326805249 1.182236764 1.292086932 1 10.4475422 -6.777969155 24.99044879 1.050727956 1.286843236 0.287418719 0.128321089 139.9521017 211585.259 0.017513028 0.023052605 1.67E-07 6.777969155 0.236115279 LVLAES(ph)PQPK ddPTM_HeLa_CUDC101_4h_R1 3 LVLAESPQPK 10 0 E7EUR8;A0A1B0GVL4;P78312-4;P78312-6;P78312-2;P78312-5;P78312 E7EUR8 FAM193A Protein FAM193A 1 0 LVLAES(1)PQPK;LVLAES(1)PQPK;LVLAES(1)PQPK ;; 164.04 3.43E-05 103552000 12593.3 11141.9 10042.7 10912.5 11439.9 10844.5 10590.3 10424.9 11289.6 11406.7 TRUE FALSE FALSE 11117.13246 11485.16873 10585.63874 11357.55892 10596.00137 10637.65923 10998.77142 11611.62848 10824.23791 11338.85244 0.980445995 1.012903977 0.933572316 1.001649768 0.934486221 0.938160126 0.970007457 1.024056759 0.954614937 1 13.46898702 -6.777934099 24.99981267 0.992168493 0.965913696 0.081641088 0.03085018 323.6926553 490595.8656 0.004472887 0.005888078 1.67E-07 6.777934099 -0.026254797 LEILQIHTK ddPTM_HeLa_CUDC101_4h_R1 1 LEILQIHTK 9 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 83.397 0.035121 6882600 5440.4 3712.1 2609.6 3722.3 3815 3631.1 3411.1 3593.6 3001.7 2225 FALSE FALSE TRUE 4802.684559 3826.465401 2750.68287 3874.111483 3533.575051 3561.842817 3542.66727 4002.680898 2877.968655 2211.765601 2.171425651 1.730050146 1.243659305 1.751592249 1.597626371 1.610407005 1.601737213 1.809722014 1.301208706 1 11.11098278 -9.587754228 1.392166511 1.001943238 1.737803681 0.426460751 0.237495868 0.27354594 0.9549125 0.186107507 0.043775753 2.58E-10 9.587754228 0.735860443 LEKHELIEFR ddPTM_HeLa_CUDC101_4h_R1 1 LEKHELIEFR 10 1 A0A087WVQ6;Q00610-2;Q00610;J3KS13;K7EJJ5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 91.658 0.014716 25245000 10188 8596.4 8384.8 9003.9 11748 9532.7 9691.6 9028.9 9185 7190.5 FALSE FALSE TRUE 8993.778084 8861.244895 8838.107651 9371.11796 10881.37345 9350.87963 10065.40826 10056.71348 8806.390412 7147.730586 1.258270436 1.239728441 1.236491435 1.311062 1.522353608 1.308230566 1.408196369 1.40697993 1.232054049 1 12.80326954 -10.77248806 0.130800374 0.406016374 1.553546846 0.474463422 0.096233884 9.842224445 0.196538747 2.03928661 0.307289425 1.69E-11 10.77248806 1.147530472 LEKPAK(ac)YDDIK ddPTM_HeLa_CUDC101_4h_R1 2 LEKPAKYDDIK 11 2 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 ; LEK(0.005)PAK(0.995)YDDIK;LEK(0.002)PAK(0.998)YDDIK 124.12 0.0023918 5933200 6070.3 3342.5 3254.4 2562.53 8291.3 5654.9 7416.1 7603.2 6376.5 3815.1 FALSE TRUE FALSE 5358.748636 3445.478463 3430.342708 2667.04105 7679.667318 5547.042204 7702.141461 8468.717555 6113.657971 3792.407616 1.413020218 0.908520078 0.904529011 0.703258014 2.025011047 1.462670358 2.030937136 2.233071551 1.612078287 1 11.88889832 -5.192956803 1.218497521 1.133104647 2.154926512 0.550515642 0.345499386 0.296215767 0.765230225 0.050610517 0.246244957 6.41E-06 5.192956803 1.021821865 LEKPAK(ac)YDDIKK ddPTM_HeLa_CUDC101_4h_R1 1 LEKPAKYDDIKK 12 3 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 LEK(0.009)PAK(0.991)YDDIKK 134.08 0.0010049 1593000 648.19 426.63 373.8 237.41 749.99 713.66 640.55 513.55 588.96 290.45 FALSE TRUE FALSE 572.2101508 439.7739646 394.0087587 247.092606 694.6647319 700.0481245 665.2562281 572.0104562 564.6828195 288.7223905 1.981869677 1.523172359 1.364662983 0.855813799 2.40599536 2.424640927 2.304137989 1.981178028 1.955798504 1 8.173539183 -7.210591537 0.083584033 4.27E-16 3.374591217 0.143411535 0.498001192 12.7414531 0.910273772 17.19022648 18.26030837 6.16E-08 7.210591537 3.374591217 AALDGGVASAAS(ph)PESKPSPGTK ddPTM_HeLa_CUDC101_4h_R1 1 AALDGGVASAASPESKPSPGTK 22 1 Q9Y4K1;A0A0J9YWL0;A0A494C1M5 Q9Y4K1 AIM1 Absent in melanoma 1 protein 1 0 AALDGGVAS(0.007)AAS(0.99)PES(0.002)KPS(0.001)PGTK 76.329 0.0011022 19258000 5526.5 4652.3 4104.3 4088 4682.9 4645.9 4119 4713.6 5325.5 4712.2 TRUE FALSE FALSE 4878.692048 4795.631849 4326.190873 4254.72631 4337.451797 4557.287198 4277.87121 5250.177171 5105.980636 4684.171625 1.041527177 1.023795077 0.923576508 0.908319902 0.925980546 0.972912088 0.913260989 1.120833648 1.090049863 1 12.19357822 -6.77789567 24.55290623 1.020471871 0.955232936 0.249788826 0.062666598 212.8648113 317594.939 0.00907689 0.011949458 1.67E-07 6.77789567 -0.065238934 EELNTDLY(ph)HMER ddPTM_HeLa_CUDC101_4h_R1 1 EELNTDLYHMER 12 0 H3BMP0;H3BV12;A0A1B0GV12;A0A0J9YX86;I6L899;F8WBI6;A6NCC3 H3BMP0 GOLGA8N;GOLGA8Q;GOLGA8R;GOLGA8O Golgin subfamily A member 8R;Golgin subfamily A member 8N;Golgin subfamily A member 8O 1 0 EELNT(0.406)DLY(0.594)HMER 55.258 0.028493 2346900 633.79 561.35 655.17 662.47 679.55 477.67 683.59 692.2 736.42 617.33 TRUE FALSE FALSE 559.498097 578.6445281 690.590472 689.48839 629.4209504 468.5592406 709.9562953 770.99725 706.0644559 613.6580937 0.91174239 0.942942877 1.125366844 1.123570922 1.025686709 0.763550983 1.156924846 1.256395472 1.150582813 1 9.261291256 -6.777876629 24.7868319 0.956004779 1.06473731 0.022238363 0.136577033 322.7587593 486708.1648 0.020490659 0.026974856 1.67E-07 6.777876629 0.108732531 VGDGDLS(ph)AEEIPENEVSLRR ddPTM_HeLa_CUDC101_4h_R1 2 VGDGDLSAEEIPENEVSLRR 20 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VGDGDLS(1)AEEIPENEVSLRR;VGDGDLS(1)AEEIPENEVSLRR ; 139.55 1.20E-05 88491000 2594.4 2112.68 2401.61 2614.32 2636.7 2318.36 2204.41 1937.75 2506.19 2167.95 TRUE FALSE FALSE 2290.288365 2177.769167 2531.448301 2720.94327 2442.195894 2274.141146 2289.434832 2158.335627 2402.883787 2155.054937 1.062751731 1.010539977 1.174656041 1.2625865 1.133240667 1.055259013 1.06235567 1.001522323 1.114998855 1 11.07350893 -6.777805603 24.99984614 1.029028771 1.117377391 0.150963806 0.073918376 263.9735061 403225.6746 0.012297759 0.01618747 1.67E-07 6.777805603 0.088348621 GPPGPALPATMNNSS(ph)SETR ddPTM_HeLa_CUDC101_4h_R1 1 GPPGPALPATMNNSSSETR 19 0 Q15003;C9JZP1 Q15003 NCAPH Condensin complex subunit 2 1 0 GPPGPALPAT(0.001)MNNS(0.058)S(0.711)S(0.226)ET(0.004)R 130.95 3.97E-05 9957000 1228.9 1177.9 1208.2 1097 1671.8 1562.1 1341.9 774.31 1285.7 1113.8 TRUE FALSE FALSE 1084.850205 1214.189703 1273.518947 1141.740402 1548.474645 1532.305545 1393.657533 862.4543205 1232.702902 1107.175068 0.979836194 1.096655568 1.150241713 1.031219393 1.39858157 1.383977647 1.258750827 0.778968336 1.11337668 1 10.11266765 -6.776746961 1.275995815 0.989486436 1.201672709 0.089520852 0.172355012 0.46113663 1.505979462 0.030379101 0.04516169 1.67E-07 6.776746961 0.212186273 RALS(ph)SAGPIPIRPPIVPVK ddPTM_HeLa_CUDC101_4h_R1 1 RALSSAGPIPIRPPIVPVK 19 2 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 RALS(0.788)S(0.212)AGPIPIRPPIVPVK 47.855 0.032926 11968000 5296.4 4649.8 4691 4969.5 5539.4 5632 4439 4411.3 4698.1 4699 TRUE FALSE FALSE 4675.564021 4793.054827 4944.609649 5172.17769 5130.769498 5524.578984 4610.213717 4913.464561 4504.442329 4671.050139 1.000966353 1.026119327 1.058564884 1.107283702 1.098418845 1.182727399 0.986975858 1.0518972 0.96433183 1 12.18953122 -6.776610892 2.129990635 1.000602253 1.085970978 0.440082531 0.047356726 0.225230846 2.095535767 0.007729534 0.010969 1.67E-07 6.776610892 0.085368725 NLSS(ph)DEATNPISR ddPTM_HeLa_CUDC101_4h_R1 1 NLSSDEATNPISR 13 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 NLS(0.262)S(0.738)DEATNPISR 209.79 1.00E-23 50484000 1820.8 1457 1096 1361.8 1364.3 1122.3 1116.4 1246.1 1208.8 1441.3 TRUE FALSE FALSE 1607.368584 1501.888443 1155.253075 1417.34009 1263.658307 1100.893997 1159.459922 1387.950987 1158.972752 1432.727084 1.121894465 1.048272529 0.806331568 0.989260346 0.881995128 0.768390582 0.809267819 0.968747644 0.808927789 1 10.48454811 -6.776468702 23.49661534 1.05847301 0.869131527 0.156115891 0.105836789 60.72974873 94943.71223 0.012571563 0.016566354 1.67E-07 6.776468702 -0.189341483 AAKLS(ph)EGSQPAEEEEDQETPSR ddPTM_HeLa_CUDC101_4h_R1 2 AAKLSEGSQPAEEEEDQETPSR 22 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 AAKLS(0.91)EGS(0.09)QPAEEEEDQETPSR;AAKLS(0.856)EGS(0.143)QPAEEEEDQET(0.001)PSR ; 110.25 9.54E-06 37637000 3281.9 3672.6 3715.5 3698.6 4855.7 4189.5 4941.7 3539.8 3891.4 2900.4 TRUE FALSE FALSE 2897.200657 3785.748453 3916.371169 3849.444895 4497.504685 4109.592268 5132.303024 3942.756524 3730.994845 2883.148292 1.004873965 1.313060609 1.358366193 1.335153279 1.559928325 1.425383592 1.780103729 1.36751777 1.2940697 1 11.49342933 -6.776147256 0.868655651 0.98907059 1.544160875 0.526066334 0.150994344 0.156089097 0.235599346 0.022492443 0.035747832 1.67E-07 6.776147256 0.555090285 LLPYPTLASPAS(ph)D ddPTM_HeLa_CUDC101_4h_R1 2 LLPYPTLASPASD 13 0 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 0 LLPYPTLASPAS(1)D;LLPYPTLASPAS(1)D ; 136.5 0.0008757 25266000 5012.7 4250.1 3696.9 3632 4364.4 4060.8 3867.6 4201.8 4363 4308.5 TRUE FALSE FALSE 4425.118905 4381.040543 3896.765597 3780.128659 4042.446907 3983.347006 4016.774628 4680.115928 4183.155293 4282.87285 1.033212766 1.022920992 0.909848537 0.882615196 0.943863395 0.930064269 0.937869222 1.092751546 0.976717133 1 12.06436313 -6.77614312 24.96664879 1.016664827 0.944793117 0.210643992 0.054250503 215.1084917 365248.9873 0.008439792 0.011118487 1.67E-07 6.77614312 -0.07187171 SGS(ph)PISSEER ddPTM_HeLa_CUDC101_4h_R1 2 SGSPISSEER 10 0 H8Y6P7;P0CAP2-3;P0CAP2;P0CAP1-11;P0CAP2-2 H8Y6P7 GCOM1;POLR2M DNA-directed RNA polymerase II subunit GRINL1A 1 0 S(0.342)GS(0.658)PISSEER;S(0.15)GS(0.85)PISSEER ; 190.26 1.20E-11 158183000 6540.4 5454 4973.8 5329.5 5756 5275.7 4915.8 5327.3 5919.9 5409.8 TRUE FALSE FALSE 5773.744227 5622.031275 5242.698673 5546.860046 5331.391348 5175.074812 5105.404053 5933.738298 5675.879216 5377.622269 1.073661172 1.04544927 0.974910176 1.031470745 0.991403092 0.962335128 0.949379446 1.103412996 1.055462606 1 12.39275271 -6.776031401 24.98630599 1.036556225 0.998787414 0.164925261 0.044225507 371.7 636470.5446 0.007536597 0.009929531 1.67E-07 6.776031401 -0.03776881 ADGGTGDSSPSPGSSLPS(ph)PLSDPR ddPTM_HeLa_CUDC101_4h_R1 2 ADGGTGDSSPSPGSSLPSPLSDPR 24 0 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 ADGGTGDSSPSPGSS(0.001)LPS(0.99)PLS(0.01)DPR;ADGGTGDSSPSPGS(0.002)S(0.009)LPS(0.944)PLS(0.045)DPR ; 161.51 4.07E-09 6073500 2586.2 2282.08 2703.51 2579.2 2684.22 3067.9 2443.05 2465.5 2597.6 2433 TRUE FALSE FALSE 2283.049556 2352.38818 2849.669928 2684.390924 2486.210438 3009.384919 2537.279257 2746.162554 2490.525829 2418.528408 0.94398294 0.972652698 1.178266056 1.10992739 1.027984799 1.244304143 1.049100457 1.135468389 1.029769103 1 11.23991377 -6.775548606 24.89969738 0.972741255 1.121203199 0.543575466 0.061197548 107.0634012 188943.0641 0.009039905 0.011913293 1.68E-07 6.775548606 0.148461944 CSVGTYNS(ph)SGAYR ddPTM_HeLa_CUDC101_4h_R1 1 CSVGTYNSSGAYR 13 0 E9PEW5;A0A0A0MQX1;Q9HD67-3;Q9HD67 E9PEW5 MYO10 Unconventional myosin-X 1 0 CSVGTYNS(0.948)S(0.051)GAYR 78.615 0.034088 6067500 357.88 283.7 341.6 322.39 357.89 348.75 290.06 300.55 319.18 311.63 TRUE FALSE FALSE 315.9298489 292.4404607 360.0679293 335.5384577 331.4891677 342.0981748 301.2477114 334.7633971 306.0232653 309.7764109 1.019864127 0.944037217 1.162347799 1.083163359 1.070091705 1.10433901 0.972468209 1.080661359 0.98788434 1 8.275083479 -6.775333224 24.99928854 1.004741657 1.074967135 0.443561777 0.048319651 198.6791694 357484.1696 0.007571886 0.009978829 1.68E-07 6.775333224 0.070225478 ADEQMESMTYS(ph)T(ph)ERK ddPTM_HeLa_CUDC101_4h_R1 1 ADEQMESMTYSTERK 15 1 Q2M3G0-1;Q2M3G0 Q2M3G0-1 ABCB5 ATP-binding cassette sub-family B member 5 2 0 ADEQMES(0.129)MT(0.415)Y(0.415)S(0.52)T(0.52)ERK 75.566 0.0019506 0 3217 2962 2401.1 2418.5 2992 2940.6 2587.6 2766.7 3226.5 2967.1 TRUE FALSE FALSE 2839.908137 3053.255709 2530.910729 2517.136884 2771.286121 2884.512954 2687.404599 3081.649945 3093.502304 2949.451557 0.962859732 1.035194391 0.858095371 0.853425403 0.939593707 0.977982821 0.911154005 1.044821346 1.048839842 1 11.526231 -6.77531768 24.99263075 0.985926452 0.928971527 0.276255246 0.058395042 287.0810596 516986.734 0.008905657 0.011737006 1.68E-07 6.77531768 -0.056954925 LEPLK(ac)PLK ddPTM_HeLa_CUDC101_4h_R1 1 LEPLKPLK 8 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 0 1 LEPLK(1)PLK 99.136 0.015865 7455700 3327.6 2556.1 2230.8 2402 2356.7 2648.1 2401.2 1959.7 2177.7 1885.5 FALSE TRUE FALSE 2937.543772 2634.850411 2351.403796 2499.963942 2182.850936 2597.591905 2493.815088 2182.784327 2087.934284 1874.284962 1.567287703 1.405789656 1.254560455 1.333822761 1.164631302 1.385910871 1.330542121 1.164595764 1.113989776 1 10.8721246 -9.588745495 1.399720403 1.001295176 1.356550973 0.42371575 0.119461329 0.284469541 1.005476052 0.093649766 0.022113807 2.58E-10 9.588745495 0.355255798 LEPLK(ac)PLK(ac)IK ddPTM_HeLa_CUDC101_4h_R1 1 LEPLKPLKIK 10 2 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 0 2 LEPLK(1)PLK(1)IK 90.15 0.013427 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 QT(ph)PT(ph)SPECDY(ph)S(ph)QY(ph)FK ddPTM_HeLa_CUDC101_4h_R1 1 QTPTSPECDYSQYFK 15 0 P19012 P19012 KRT15 "Keratin, type I cytoskeletal 15" 5 0 QT(0.885)PT(0.899)S(0.239)PECDY(0.997)S(0.984)QY(0.997)FK 44.729 0.0033525 0 1542.1 1289.3 972.27 1120.8 1280.7 1108.6 1188.2 865.57 1308.5 1242.9 TRUE FALSE FALSE 1361.337376 1329.021805 1024.833857 1166.511069 1186.225313 1087.455302 1234.029272 964.10299 1254.563076 1235.507176 1.101844977 1.075689264 0.829484343 0.94415564 0.960112038 0.880169151 0.998803808 0.780329738 1.015423545 1 10.27088767 -6.775043478 24.99974766 1.051506946 0.907382033 0.555287462 0.065203739 135.0177123 248116.4533 0.010656878 0.01404829 1.68E-07 6.775043478 -0.144124913 S(ph)RSPQAFR ddPTM_HeLa_CUDC101_4h_R1 1 SRSPQAFR 8 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 S(0.95)RS(0.05)PQAFR 84.916 0.020241 89026000 1587.2 1161.9 1625.7 1566.9 1533.6 1613.9 1442.8 976.92 1382.6 1365.5 TRUE FALSE FALSE 1401.150822 1197.696762 1713.590259 1630.804955 1420.469383 1583.117546 1498.449279 1088.128624 1325.608643 1357.377945 1.032248113 0.882360558 1.262426773 1.20143764 1.046480377 1.166305635 1.103929296 0.801640124 0.976595095 1 10.40660676 -6.775003187 24.99976446 1.005688715 1.102946054 0.178193031 0.122440941 359.8764939 663295.1263 0.019120546 0.025205434 1.68E-07 6.775003187 0.097257339 IMRVNNSTMLGASGDY(ph)ADFQYLK ddPTM_HeLa_CUDC101_4h_R1 1 IMRVNNSTMLGASGDYADFQYLK 23 1 P28070 P28070 PSMB4 Proteasome subunit beta type-4 1 0 IMRVNNS(0.002)T(0.002)MLGAS(0.056)GDY(0.804)ADFQY(0.137)LK 46.982 0.020452 7510400 3151.6 2555.6 2160.2 2473.5 2363 2201.2 2202.1 2472.2 2639.9 2542.4 TRUE FALSE FALSE 2782.174226 2634.335007 2276.986946 2574.380021 2188.686198 2159.215777 2287.035735 2753.625255 2531.082205 2527.277692 1.100858143 1.042360725 0.900964288 1.018637576 0.866025212 0.854364277 0.90494042 1.08956181 1.00150538 1 11.30336848 -6.774778359 23.22028785 1.048563258 0.93397493 0.297520473 0.071839285 80.86539425 140768.8481 0.011983493 0.015811105 1.68E-07 6.774778359 -0.114588328 LGSGGSGDGPS(ph)VSWSR ddPTM_HeLa_CUDC101_4h_R1 1 LGSGGSGDGPSVSWSR 16 0 Q9Y6R9;Q9Y6R9-2 Q9Y6R9 CCDC61 Coiled-coil domain-containing protein 61 1 0 LGSGGS(0.008)GDGPS(0.991)VSWSR 138.28 0.00036081 11142000 3668.1 2955.5 2904.8 2712.4 3305.9 2806.6 2815.4 3065.4 3738.6 3046.5 TRUE FALSE FALSE 3238.130878 3046.555452 3061.842275 2823.023396 3062.030343 2753.068781 2923.990921 3414.352745 3584.493326 3028.379283 1.069261997 1.006001946 1.011049802 0.932189509 1.011111904 0.909089821 0.965529958 1.127452154 1.183634212 1 11.56433019 -6.774762083 2.649963563 1.032512965 0.984405205 0.133300325 0.074744061 0.44347428 6.402585123 0.00961341 0.013473017 1.68E-07 6.774762083 -0.04810776 YVEVS(ph)PATER ddPTM_HeLa_CUDC101_4h_R1 2 YVEVSPATER 10 0 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 0 YVEVS(0.998)PAT(0.002)ER;YVEVS(0.995)PAT(0.005)ER ; 152.69 0.00030772 12937000 4589.4 3863.9 3280.8 3388 3913.6 3396.3 3529 3719.5 3704.5 3873.1 TRUE FALSE FALSE 4051.437489 3982.942179 3458.169972 3526.177284 3624.901525 3331.521236 3665.114712 4142.912845 3551.798942 3850.062629 1.052304308 1.034513607 0.898211355 0.915875305 0.941517548 0.865316115 0.951962361 1.076063754 0.922530173 1 11.9106662 -6.774061251 24.85514136 1.026125468 0.937341393 0.143757749 0.06230965 164.7505348 324428.0743 0.008758248 0.011554639 1.68E-07 6.774061251 -0.088784075 DLYRPLSS(ph)DDLDSVGDSV ddPTM_HeLa_CUDC101_4h_R1 1 DLYRPLSSDDLDSVGDSV 18 1 Q5VZY9 Q5VZY9 DCLK1 1 0 DLYRPLS(0.361)S(0.635)DDLDS(0.005)VGDSV 113.01 0.0017484 8166000 1268.3 1180.4 890.53 960.19 1014 1211.9 913.17 1105.4 1101.3 1199.2 TRUE FALSE FALSE 1119.631797 1216.766725 938.6747455 999.3506985 939.1992402 1188.785027 948.3912728 1231.234268 1055.903948 1192.067105 0.939235545 1.020719991 0.787434484 0.838334263 0.787874471 0.997246734 0.795585474 1.032856508 0.885775594 1 10.21924974 -6.773917233 24.98328466 0.974209994 0.869865298 0.19378923 0.086425337 209.2046304 418870.8152 0.012367248 0.016317523 1.68E-07 6.773917233 -0.104344696 FYDS(ph)NTVK ddPTM_HeLa_CUDC101_4h_R1 2 FYDSNTVK 8 0 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 FYDS(0.988)NT(0.011)VK;FYDS(0.89)NT(0.11)VK ; 89.805 0.029589 23100000 5996.5 5209.2 5535 5352.3 5976.6 5974.8 5915.6 4767.6 5286.7 5455.5 TRUE FALSE FALSE 5293.59936 5369.689278 5834.238842 5570.589929 5535.718125 5860.840645 6143.766674 5310.324313 5068.779988 5423.050443 0.976129471 0.990160304 1.075822345 1.027205995 1.020775702 1.080727665 1.132898677 0.97921352 0.934673214 1 12.40488887 -6.773875699 24.45253828 0.988520274 1.055069986 0.431452417 0.042474108 124.2617852 244325.7459 0.006061962 0.007999883 1.68E-07 6.773875699 0.066549712 LSS(ph)SLGR ddPTM_HeLa_CUDC101_4h_R1 1 LSSSLGR 7 0 Q9BST9-3;Q9BST9-2;Q9BST9 Q9BST9-3 RTKN Rhotekin 1 0 LS(0.086)S(0.616)S(0.298)LGR 104.75 0.01641 31019000 6022.5 5167.9 6171.9 5761 6211.4 6046.9 6118.5 5706.2 6527.9 5719.1 TRUE FALSE FALSE 5316.55168 5327.116874 6505.571583 5995.958481 5753.197397 5931.565457 6354.492595 6355.770743 6258.817199 5685.082539 0.935175812 0.937034218 1.144323154 1.054682749 1.011981331 1.043356084 1.11774852 1.117973345 1.100919319 1 12.47296558 -6.773849931 24.99989478 0.966106677 1.077180197 0.310311049 0.05902906 119.6028292 240928.2544 0.007485497 0.009875926 1.68E-07 6.773849931 0.11107352 IGDEYAEDS(ph)SDEEDIR ddPTM_HeLa_CUDC101_4h_R1 1 IGDEYAEDSSDEEDIR 16 0 Q14137;A0A075B729;Q14137-2 Q14137 BOP1 Ribosome biogenesis protein BOP1 1 0 IGDEYAEDS(0.858)S(0.142)DEEDIR 180.62 1.09E-16 0 571 465.76 207.15 301.8 318.67 472.7 227.39 224.55 333.55 386.64 TRUE FALSE FALSE 504.0682456 480.1095135 218.3491556 314.1087085 295.162349 463.6840351 236.1605085 250.1118643 319.8009278 384.3402481 1.311515638 1.249178341 0.568114208 0.817267278 0.76797148 1.206441525 0.614456877 0.650756369 0.832077643 1 8.586240253 -6.773771235 24.97040469 1.158870432 0.785507277 0.355796445 0.208965857 152.1968727 308178.2837 0.032531002 0.042924055 1.68E-07 6.773771235 -0.373363155 KMLGEDS(ph)DEEEEMDTSERK ddPTM_HeLa_CUDC101_4h_R1 1 KMLGEDSDEEEEMDTSERK 19 2 A0A087X0M4;Q9BWU0;A0A087WWF4;H7C256 A0A087X0M4 SLC4A1AP Kanadaptin 1 0 KMLGEDS(0.982)DEEEEMDT(0.007)S(0.011)ERK 60.541 0.027059 7939000 645.51 638.17 713.16 691.49 842.14 763.39 609.38 625.82 700.48 773.78 TRUE FALSE FALSE 569.8442963 657.8312613 751.7155868 719.6919511 780.01701 748.8296076 632.8839907 697.0608191 671.6059179 769.1775221 0.740848868 0.85523984 0.977297913 0.935664304 1.01409231 0.97354588 0.822806144 0.906241796 0.873148134 1 9.587172793 -6.773686569 24.8766848 0.872524976 0.937956988 0.174222808 0.075345433 447.1458171 908248.0002 0.017527395 0.023131349 1.68E-07 6.773686569 0.065432012 MEVGPFS(ph)TGQESPTAENAR ddPTM_HeLa_CUDC101_4h_R1 1 MEVGPFSTGQESPTAENAR 19 0 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 1 0 MEVGPFS(0.446)T(0.446)GQES(0.091)PT(0.016)AENAR 81.643 0.011524 7463500 1213.6 981.93 859.53 855.58 828.26 1050.4 1034.6 853.87 948.84 940.86 TRUE FALSE FALSE 1071.343648 1012.182099 905.9987917 890.4742505 767.1609099 1030.36537 1074.504869 951.0711093 909.7284136 935.2637229 1.145498988 1.082242446 0.968709434 0.952110329 0.820261592 1.101684311 1.148879019 1.016901528 0.97269721 1 9.869229419 -6.773512076 24.6476102 1.071642734 1.002207903 0.041327306 0.094260413 354.4129048 723567.4266 0.016638973 0.021962824 1.68E-07 6.773512076 -0.069434831 LEQLDHR ddPTM_HeLa_CUDC101_4h_R1 1 LEQLDHR 7 0 A0A5H1ZRP4;Q8WX92;Q8WX92-2 A0A5H1ZRP4 NELFB Negative elongation factor B 0 0 176.09 2.28E-08 0 2672.3 1907.2 2016.9 2208.1 2416.9 2200.4 2141.6 1575.5 2073.2 2421.4 FALSE FALSE TRUE 2359.057045 1965.958571 2125.939715 2298.155862 2238.610102 2158.431036 2224.202229 1754.848552 1987.741818 2406.997405 0.98008292 0.816768048 0.883233073 0.954781196 0.930042591 0.896731767 0.924056762 0.729061256 0.825818015 1 11.23301887 -1 0.144043363 1.032720266 0.278802258 0 0.082403953 48.68549793 0.459379037 0.154736703 7.633406638 0.1 1 -0.753918008 LAGGQTSQPTTPLTS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 1 LAGGQTSQPTTPLTSPQR 18 0 O95155;O95155-4;O95155-2;B1AQ61 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 LAGGQTSQPTTPLT(0.208)S(0.792)PQR 216.71 9.63E-25 11160000 3222.6 3033.4 2260.8 2697.3 2632.9 2973.6 2403.5 2576.2 3024.2 3053.6 TRUE FALSE FALSE 2844.851713 3126.855459 2383.025687 2807.307553 2438.676212 2916.883534 2496.2038 2869.464195 2899.541196 3035.437051 0.937213213 1.030117049 0.785068393 0.924844596 0.803402005 0.96094351 0.822354 0.945321595 0.955230218 1 11.56768854 -6.773500305 24.99990117 0.974004721 0.874424827 0.42898842 0.060269935 157.3815124 326219.9775 0.008917196 0.011768355 1.68E-07 6.773500305 -0.099579895 SSATSGDIWPGLS(ph)AYDNSPR ddPTM_HeLa_CUDC101_4h_R1 2 SSATSGDIWPGLSAYDNSPR 20 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SSATSGDIWPGLS(0.971)AY(0.007)DNS(0.021)PR;SSATSGDIWPGLS(0.577)AY(0.384)DNS(0.039)PR ; 124.29 2.20E-05 64725300 3676.4 3160.9 2195.4 2451 2906 2741 2464.7 2542.7 3543.1 3038 TRUE FALSE FALSE 3245.457965 3258.283582 2314.089965 2550.962374 2691.63017 2688.719992 2559.764305 2832.15069 3397.051918 3019.929841 1.074679922 1.078926914 0.766272757 0.844709152 0.891288974 0.890325317 0.847623766 0.937820029 1.124877761 1 11.56029932 -6.773440771 24.99995268 1.039525493 0.864003049 0.774864423 0.05358517 81.55686693 169889.8099 0.008164032 0.01077549 1.68E-07 6.773440771 -0.175522444 KS(ph)TGSPTQETQAPFIAK ddPTM_HeLa_CUDC101_4h_R1 1 KSTGSPTQETQAPFIAK 17 1 H0Y704;O15231-2;O15231-3 H0Y704 ZNF185 Zinc finger protein 185 1 0 KS(0.336)T(0.336)GS(0.286)PT(0.041)QET(0.001)QAPFIAK 53.553 0.037828 11762000 1409.4 1246.6 1622.8 1666.1 1611.3 1725.7 1588.3 1577.3 1402.7 1282.7 TRUE FALSE FALSE 1244.192269 1285.006268 1710.533477 1734.050759 1492.437609 1692.785148 1649.561263 1756.853456 1344.880112 1275.070443 0.975783162 1.007792373 1.341520765 1.359964674 1.170474633 1.327601276 1.293702063 1.377848154 1.054749657 1 10.31636124 -6.773244557 12.29252162 0.989655999 1.307515118 0.867982075 0.057527049 0.114646071 118.2273178 0.008358925 0.011154466 1.69E-07 6.773244557 0.317859119 DEILPTT(ph)PISEQK ddPTM_HeLa_CUDC101_4h_R1 2 DEILPTTPISEQK 13 0 E9PL09;P23396;P23396-2;E9PPU1;H0YEU2;E9PSF4 E9PL09 RPS3 40S ribosomal protein S3 1 0 DEILPT(0.226)T(0.774)PISEQK;DEILPT(0.338)T(0.662)PISEQK ; 201.72 4.04E-16 2313572000 17576.3 14455.1 14728.7 13746.1 15112.6 14904.9 13864.3 13718.2 15723.7 15813.4 TRUE FALSE FALSE 15516.03276 14900.4445 15524.97807 14306.72537 13997.77361 14620.61387 14399.0507 15279.82444 15075.56243 15719.34119 0.987066351 0.947905152 0.987635416 0.910135177 0.890480933 0.930103475 0.916008535 0.972039747 0.959045436 1 13.94025313 -6.772908571 1.105620199 0.994858298 0.923445639 0.39891845 0.027460418 0.225130692 0.549134737 0.004655746 0.007079156 1.69E-07 6.772908571 -0.071412659 LERENAEVDGDDDAEEMEAK ddPTM_HeLa_CUDC101_4h_R1 2 LERENAEVDGDDDAEEMEAK 20 1 P05198 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 0 0 ; ; 244.18 1.65E-56 51933000 9263.1 9700.6 9832.3 9112.7 12464.1 10207.4 10202.1 11755.4 10280.2 7376.2 FALSE FALSE TRUE 8177.29346 9999.463988 10363.86388 9484.355294 11544.64817 10012.71085 10595.59841 13093.58722 9856.445805 7332.326034 1.11523866 1.363750594 1.413448315 1.29349885 1.574486475 1.365557233 1.44505282 1.785734453 1.344245436 1 12.84005522 -5.987917745 0.255002213 0.931160155 1.829073187 0.436833714 0.155714573 1.227184468 0.146336947 0.106511532 0.361682501 1.03E-06 5.987917745 0.897913032 LERENAEVDGDDDAEEMEAKAED ddPTM_HeLa_CUDC101_4h_R1 3 LERENAEVDGDDDAEEMEAKAED 23 2 P05198 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 0 0 ;; ;; 183.6 8.09E-13 36727700 3136.13 3727.75 4045.48 4232.19 6666.3 4583.7 4620.5 6507.1 4311.44 3379.57 FALSE FALSE TRUE 2768.517595 3842.597559 4264.190886 4404.797001 6174.54033 4496.273559 4798.714233 7247.841961 4133.720618 3359.468167 0.824094011 1.143811272 1.26930534 1.311159023 1.83795173 1.338388499 1.428414854 2.157437309 1.230468756 1 11.71401714 -6.353699501 0.995227555 0.915885039 1.672959553 0.555048214 0.246000783 0.219804901 0.432282287 0.040263475 0.080702057 4.43E-07 6.353699501 0.757074514 KKDAS(ph)DDLDDLNFFNQK ddPTM_HeLa_CUDC101_4h_R1 1 KKDASDDLDDLNFFNQK 17 2 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 KKDAS(1)DDLDDLNFFNQK 59.864 0.021003 29737000 4422 4038.2 4402.9 4246.7 5171.9 5138.7 4285.1 3233.7 4352.4 4450.9 TRUE FALSE FALSE 3903.659863 4162.612156 4640.934092 4419.898782 4790.379241 5040.687859 4450.377742 3601.811337 4172.99223 4424.425849 0.8822975 0.940825386 1.048934766 0.998976801 1.082712064 1.139286324 1.005865596 0.814074291 0.94317147 1 12.11127454 -6.772901128 24.09223796 0.942595765 1.022563194 0.153884359 0.083171499 200.6021552 421658.7527 0.014481437 0.019130842 1.69E-07 6.772901128 0.079967428 LQS(ph)IGTENTEENRR ddPTM_HeLa_CUDC101_4h_R1 2 LQSIGTENTEENRR 14 1 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8;H3BR04;H3BMQ8 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 LQS(0.813)IGT(0.186)ENTEENRR;LQS(0.999)IGT(0.001)ENTEENRR ; 117.53 0.00093411 22768000 2554.6 2213.61 1939.1 1944.73 2403.8 2097.68 1902.1 2118.26 2237.04 2293.3 TRUE FALSE FALSE 2255.153661 2281.8087 2043.933611 2024.044495 2226.476463 2057.670249 1975.464634 2359.394156 2144.828264 2279.65935 0.989250285 1.000942839 0.896596069 0.887871469 0.976670687 0.90262181 0.866561328 1.034976632 0.940854722 1 11.15460254 -6.772431028 24.97244417 0.995233347 0.924073604 0.216608303 0.048936225 159.2042778 361703.0515 0.006807433 0.008993768 1.69E-07 6.772431028 -0.071159743 LESDYEILER ddPTM_HeLa_CUDC101_4h_R1 3 LESDYEILER 10 0 J3KR24;A0A0A0MSX9;P41252;Q5TCD1 J3KR24 IARS "Isoleucine--tRNA ligase, cytoplasmic" 0 0 ;; ;; 140.83 0.0065552 33618300 5751.6 4770.5 5882.7 5065.6 6115 6080.8 5799.7 5320.4 6328.1 6326.5 FALSE FALSE TRUE 5077.406167 4917.473451 6200.736556 5272.197063 5663.908633 5964.818871 6023.396372 5926.05283 6067.25304 6288.869697 0.807363869 0.781932794 0.985985854 0.838337781 0.900624263 0.948472326 0.957786798 0.942308096 0.964760495 1 12.61858503 -5.264805255 5.956911699 0.897235231 0.95064216 0.107890355 0.069254837 0.348719623 55.01182441 0.012303384 0.029649125 5.43E-06 5.264805255 0.05340693 LESENDEYER ddPTM_HeLa_CUDC101_4h_R1 1 LESENDEYER 10 0 O94906 O94906 PRPF6 Pre-mRNA-processing factor 6 0 0 178.84 3.60E-07 20519000 1589.9 959.61 1346.9 1335.9 1235.4 1326.3 981.46 1057.5 1132.4 1299.3 FALSE FALSE TRUE 1403.534332 989.1744467 1419.717488 1390.383776 1144.267003 1301.003037 1019.315241 1177.881525 1085.721993 1291.571706 1.086687116 0.76586878 1.099216932 1.076505292 0.885949265 1.007302213 0.789205304 0.911975324 0.840620763 1 10.33491203 -5.197416973 1.204794164 1.02487224 0.85453832 0 0.119319503 0.560088972 1.411196061 0.015773939 0.077137669 6.35E-06 5.197416973 -0.17033392 VTVDTGVIPASEEKAET(ph)PTAAEDDNEGDKK ddPTM_HeLa_CUDC101_4h_R1 1 VTVDTGVIPASEEKAETPTAAEDDNEGDKK 30 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 VTVDT(0.001)GVIPAS(0.176)EEKAET(0.789)PT(0.033)AAEDDNEGDKK 66.925 0.00030416 71796000 3382 2606.1 2153.7 2190.2 2466.9 2216 2056.8 1558 2744.7 2967.6 TRUE FALSE FALSE 2985.567087 2686.390852 2270.135537 2279.525823 2284.921702 2173.733492 2136.131465 1735.356422 2631.562304 2949.948583 1.012074279 0.910656839 0.769550883 0.772734086 0.77456323 0.736871654 0.724124982 0.588266668 0.892070567 1 11.52647409 -6.772364085 1.276680298 1.009068103 0.713705436 0.770344277 0.06048774 0.096034159 0.31405351 0.008799732 0.013109619 1.69E-07 6.772364085 -0.295362666 S(ph)LYYYIQQDTK ddPTM_HeLa_CUDC101_4h_R1 1 SLYYYIQQDTK 11 0 P07355;P07355-2;A6NMY6 P07355 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein 1 0 S(0.657)LY(0.33)Y(0.009)Y(0.002)IQQDT(0.001)K 90.793 0.023808 3765500 2210.7 1526.9 910.71 1241.1 830.88 1279.9 1148.3 1266.3 756.09 1053.7 TRUE FALSE FALSE 1951.565097 1573.941979 959.9457373 1291.717422 769.5876377 1255.48804 1192.590316 1410.450473 724.9236502 1047.432546 1.863189287 1.502666674 0.916474995 1.233222538 0.734737183 1.198633788 1.138584361 1.346578813 0.692095785 1 10.03264162 -6.771958641 24.99410332 1.426135196 1.091357852 0 0.342643064 282.4391573 671083.4894 0.057312128 0.075767126 1.69E-07 6.771958641 -0.334777343 EEDEENDNDNES(ph)DHDEADS ddPTM_HeLa_CUDC101_4h_R1 2 EEDEENDNDNESDHDEADS 19 0 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 0 EEDEENDNDNES(0.979)DHDEADS(0.021);EEDEENDNDNES(1)DHDEADS ; 200.33 4.05E-17 129509000 2802.85 2268.71 1905.98 1952.15 2248.67 2090.99 1903.18 1814.39 2648.5 2256.76 TRUE FALSE FALSE 2474.304172 2338.606266 2009.023044 2031.767115 2082.790094 2051.10785 1976.58629 2020.932824 2539.327709 2243.336691 1.102957118 1.0424678 0.895551279 0.90568978 0.928434016 0.914311194 0.881092124 0.900860237 1.131942307 1 11.13143045 -6.771791759 9.870024739 1.049562284 0.904847362 0.825798634 0.036682839 0.067667339 55.74833189 0.006388852 0.008575585 1.69E-07 6.771791759 -0.144714922 DLS(ph)PQHMVVR ddPTM_HeLa_CUDC101_4h_R1 2 DLSPQHMVVR 10 0 A0A2R8Y5P7;P49590-2;P49590;A0A2R8Y5E8;D6RB22;A0A2R8Y3N3 A0A2R8Y5P7 HARS2 "Probable histidine--tRNA ligase, mitochondrial" 1 0 DLS(1)PQHMVVR;DLS(1)PQHMVVR ; 120.59 0.0030133 67547000 9463.5 7915 5483.8 7047.6 7116.1 7048.8 6230.4 5946.6 6096.3 6700.6 TRUE FALSE FALSE 8354.202876 8158.851768 5780.270816 7335.03159 6591.15948 6914.355884 6470.708615 6623.536907 5845.007934 6660.744533 1.254244602 1.224915883 0.867811517 1.101232986 0.989552962 1.038075526 0.971469268 0.994413894 0.877530718 1 12.70146773 -6.771748177 24.99999622 1.131278754 0.999454499 0.096980467 0.116446425 223.929196 543052.8276 0.018046281 0.023864324 1.69E-07 6.771748177 -0.131824255 DVTNFTVGGFAPMS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 7 DVTNFTVGGFAPMSPR 16 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 0 DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVT(0.011)NFT(0.002)VGGFAPMS(0.987)PR;DVTNFTVGGFAPMS(1)PR ;;;;;; 231.37 4.17E-43 677052400 16150.5 12991.51 11187.53 10935.61 12793.7 12759 12557.32 10818.81 12996.4 12716.93 TRUE FALSE FALSE 14257.36287 13391.76302 11792.36171 11381.61144 11849.93424 12515.64333 13041.66004 12050.3796 12460.68289 12641.28913 1.127840897 1.05936688 0.932844869 0.900352118 0.937399193 0.990060681 1.031671683 0.953255595 0.985712988 1 13.62585597 -6.771665866 24.28259404 1.061980936 0.958919825 0.394180737 0.049870526 106.8808596 253786.1578 0.009582597 0.01267776 1.69E-07 6.771665866 -0.103061111 VLPEAGAGEDS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 2 VLPEAGAGEDSPGR 14 0 R4GNH0;Q8WTV1-3;Q8WTV1 R4GNH0 THAP3 THAP domain-containing protein 3 1 0 VLPEAGAGEDS(1)PGR;VLPEAGAGEDS(1)PGR ; 93.909 0.010999 14015400 3098.4 2593.9 2305.1 2433.5 2855.2 2436.63 2436.8 2218.7 2885.6 2550.2 TRUE FALSE FALSE 2735.210249 2673.814984 2429.720679 2532.748648 2644.577584 2390.155342 2530.788192 2471.26784 2766.654347 2535.031297 1.078965081 1.054746341 0.958457863 0.999099558 1.043212992 0.942850428 0.998326212 0.974847073 1.091368911 1 11.30778784 -6.77132752 24.9995331 1.039640264 0.987903252 0.463124502 0.035188432 192.8090497 487465.6278 0.006171665 0.008166298 1.69E-07 6.77132752 -0.051737012 S(ph)SPSVKPAVDPAAAK ddPTM_HeLa_CUDC101_4h_R1 1 SSPSVKPAVDPAAAK 15 1 H3BV90;Q6FI81-3;Q6FI81;H3BPG7;H3BT65 H3BV90 CIAPIN1 Anamorsin 1 0 S(0.491)S(0.491)PS(0.018)VKPAVDPAAAK 110.84 0.00075902 0 1218 1063 1221.6 1330.3 1312.8 1256.6 1156.1 921.19 1084.2 1179 TRUE FALSE FALSE 1075.227886 1095.74977 1287.643391 1384.555384 1215.957359 1232.632449 1200.691164 1026.054546 1039.508817 1171.987256 0.917439913 0.934950244 1.098683783 1.181374096 1.037517561 1.051745608 1.024491656 0.875482682 0.886962561 1 10.19474117 -6.771324748 24.98829292 0.957969226 1.050137051 0.308828387 0.077385183 220.7532259 558020.4928 0.012750657 0.01687154 1.69E-07 6.771324748 0.092167825 LIIES(ph)PSNTSSTEPA ddPTM_HeLa_CUDC101_4h_R1 1 LIIESPSNTSSTEPA 15 0 P38432 P38432 COIL Coilin 1 0 LIIES(0.773)PS(0.227)NTSSTEPA 133.88 0.00058934 14411000 3779 3331.6 2998.1 3040.6 3673.3 3348.3 3200.7 2845.2 3439.9 3401.2 TRUE FALSE FALSE 3336.031349 3434.242647 3160.186355 3164.608811 3402.327977 3284.436756 3324.152071 3169.086067 3298.105866 3380.969511 0.986708498 1.015756763 0.934698271 0.936006314 1.006317261 0.971448203 0.983194927 0.937330567 0.975491159 1 11.72322129 -6.771163303 24.99998445 0.99520058 0.963816059 0.32034653 0.023385941 185.255702 476287.2836 0.003637593 0.004813611 1.69E-07 6.771163303 -0.031384521 DYEEVGADS(ph)ADGEDEGEEY ddPTM_HeLa_CUDC101_4h_R1 2 DYEEVGADSADGEDEGEEY 19 0 Q9BQE3;F5H5D3 Q9BQE3 TUBA1C Tubulin alpha-1C chain 1 0 DYEEVGADS(1)ADGEDEGEEY;DYEEVGADS(0.996)ADGEDEGEEY(0.004) ; 218.45 4.69E-33 16277400 7388.1 5927 4943.8 5500.4 6030.4 5860.2 5113.6 4413 6473.7 5581.8 TRUE FALSE FALSE 6522.078118 6109.603845 5211.076782 5724.730087 5585.549406 5748.426449 5310.833265 4915.358082 6206.851346 5548.599205 1.175445888 1.101107436 0.939169796 1.031743306 1.006659375 1.036013998 0.957148474 0.885873695 1.118633932 1 12.43790788 -6.77102225 24.98406406 1.086533714 0.981881412 0.507234316 0.058583498 187.3605489 488478.0133 0.012532942 0.016590157 1.69E-07 6.77102225 -0.104652302 S(ph)PMVGFDPHPPMR ddPTM_HeLa_CUDC101_4h_R1 1 SPMVGFDPHPPMR 13 0 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 S(1)PMVGFDPHPPMR 83.292 0.016933 4013200 2310.4 2166.3 1354.5 1859.7 2023.3 1655.2 1593.8 1521.1 2080.7 2003.7 TRUE FALSE FALSE 2039.578414 2233.041135 1427.728367 1935.546604 1874.04519 1623.629818 1655.2734 1694.255876 1994.932665 1991.781903 1.02399686 1.121127334 0.716809589 0.971766337 0.940888752 0.815164459 0.831051531 0.85062319 1.001581881 1 10.95984397 -6.771012618 24.9992035 1.01988313 0.860808294 0.594183619 0.073164493 113.0596199 295239.3259 0.011397588 0.015087013 1.69E-07 6.771012618 -0.159074836 SGSLDSELSVS(ph)PKR ddPTM_HeLa_CUDC101_4h_R1 2 SGSLDSELSVSPKR 14 1 Q12802-4;Q12802;Q12802-2;A0A087WTD7;A8MYJ1 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 SGSLDSELS(0.003)VS(0.997)PKR;SGSLDSELSVS(1)PKR ; 143.93 0.00071048 162142000 4598.9 4428.2 4628.4 4953.7 6122.5 4683.6 4477 5213.4 4839.2 4476 TRUE FALSE FALSE 4059.823913 4564.627593 4878.625304 5155.733298 5670.855373 4594.268133 4649.67939 5806.872383 4639.726128 4449.376553 0.912447815 1.025902739 1.09647391 1.158754094 1.274528084 1.032564468 1.04501818 1.305097987 1.042781179 1 12.11938748 -6.77097561 2.266927081 0.958993039 1.153783208 0.442128411 0.087221371 0.174333537 1.838888519 0.014089827 0.019954738 1.69E-07 6.77097561 0.19479017 GEYQESLRS(ph)LEEEGQELPQSADVQR ddPTM_HeLa_CUDC101_4h_R1 2 GEYQESLRSLEEEGQELPQSADVQR 25 1 P48681 P48681 NES Nestin 1 0 GEY(0.002)QES(0.149)LRS(0.849)LEEEGQELPQSADVQR;GEY(0.002)QES(0.048)LRS(0.95)LEEEGQELPQSADVQR ; 128.01 1.44E-10 17063300 1238.21 1124.11 883.63 992.99 921.48 1243.04 914.11 857.13 1059.57 1171.24 TRUE FALSE FALSE 1093.068901 1158.742497 931.4017106 1033.488424 853.5042562 1219.331083 949.3675289 954.7022146 1015.894076 1164.273412 0.938842105 0.99524947 0.799985382 0.887668148 0.733078886 1.047289297 0.815416309 0.819998296 0.872556279 1 10.18521418 -6.770848714 24.99013692 0.972122664 0.854261889 0.242764521 0.084275064 158.0771126 419834.5963 0.011978573 0.015860915 1.69E-07 6.770848714 -0.117860775 KWDGS(ph)EEDEDNSKK ddPTM_HeLa_CUDC101_4h_R1 2 KWDGSEEDEDNSKK 14 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 KWDGS(0.992)EEDEDNS(0.008)KK;KWDGS(0.999)EEDEDNS(0.001)KK ; 115.53 0.0018653 203723000 4822.1 4356 5150.1 5229 4824.7 4781.5 4741.6 5115.8 4728.9 5339.8 TRUE FALSE FALSE 4256.860748 4490.203197 5428.529984 5442.261222 4468.791493 4690.300854 4924.4851 5698.161993 4533.97274 5308.038632 0.801964915 0.845925116 1.022699788 1.025286664 0.84189129 0.883622215 0.927741006 1.073496707 0.854171014 1 12.37396316 -6.770844708 24.99844845 0.899328602 0.954670649 0.188579415 0.081689694 459.0531193 1220116.306 0.016277436 0.021551344 1.69E-07 6.770844708 0.055342047 SRPTS(ph)EGSDIEST(ph)EPQK ddPTM_HeLa_CUDC101_4h_R1 1 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;D6RFF0;H0YA82 Q4G0J3 LARP7 La-related protein 7 2 0 S(0.002)RPT(0.031)S(0.967)EGS(0.104)DIES(0.157)T(0.739)EPQK 159.4 0.00041877 80833000 4401.3 4036.9 4235.9 4341.8 4415.6 4306.8 4356.5 4014.1 4287.2 4548.6 TRUE FALSE FALSE 3885.386286 4161.272104 4464.905567 4518.877371 4089.869985 4224.654966 4524.531664 4471.048918 4110.479801 4521.544725 0.859305065 0.920320899 0.987473494 0.999410079 0.904529366 0.934338865 1.000660602 0.988832178 0.909087502 1 12.14260002 -6.770764049 24.88746263 0.930711346 0.967485122 0.212623287 0.043026129 386.3408761 1031138.664 0.009684272 0.012826359 1.70E-07 6.770764049 0.036773776 LFDQAFGLPR ddPTM_HeLa_CUDC101_4h_R1 1 LFDQAFGLPR 10 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 0 122.96 0.022791 12043000 3523.1 2552.1 1207 2051.4 2114.5 2023.5 2049.4 1796.5 984.4 1124.8 FALSE FALSE TRUE 3110.127559 2630.727176 1272.254071 2135.064959 1958.517548 1984.905109 2128.446045 2001.006298 943.8226153 1118.10964 2.781594442 2.352834716 1.137861642 1.909530947 1.751632826 1.775232981 1.903611211 1.789633349 0.844123494 1 10.12684595 -5.759483514 23.2007543 1.849168275 1.809941199 0 0.581179148 502.0986785 5955473.929 0.104625228 0.200978839 1.74E-06 5.759483514 -0.039227076 LFDSTIADEGTWTLEDR ddPTM_HeLa_CUDC101_4h_R1 1 LFDSTIADEGTWTLEDR 17 0 Q8WVJ2 Q8WVJ2 NUDCD2 NudC domain-containing protein 2 0 0 115.24 0.0033219 2719300 873.64 810.65 789.57 876.16 1002.6 1006 1105.6 1374.8 991.13 864.84 FALSE FALSE TRUE 771.2332436 835.6251656 832.2565425 911.8935919 928.6401955 986.8122261 1148.243362 1531.301675 950.2752019 859.6958932 0.897100067 0.972000881 0.968082492 1.060716469 1.080196152 1.147861975 1.335638999 1.781213202 1.105362035 1 9.747682604 -1 0.583743252 0.952604138 48.44276228 0.942858817 0.058390145 15.99138622 0.120259357 0.0081099 967.0532337 0.1 1 47.49015814 DLFDYS(ph)PPLHK ddPTM_HeLa_CUDC101_4h_R1 2 DLFDYSPPLHK 11 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 DLFDYS(1)PPLHK;DLFDY(0.001)S(0.999)PPLHK ; 94.767 0.018881 528500000 4759.8 4016.7 3470.9 3641 3704.9 3914.5 3843.8 3784.5 4193.8 3916 TRUE FALSE FALSE 4201.863459 4140.449766 3658.547353 3789.495718 3431.596908 3839.837435 3992.056654 4215.312183 4020.929789 3892.707458 1.079419274 1.063642673 0.939846467 0.973485873 0.881545029 0.986418187 1.025521876 1.082874125 1.032939113 1 11.92655821 -6.770635092 24.99995906 1.040511875 0.978911164 0.2494853 0.052744901 238.26468 647758.1504 0.009555523 0.012656593 1.70E-07 6.770635092 -0.061600711 QQDS(ph)QPEEVMDVLEMVENVK ddPTM_HeLa_CUDC101_4h_R1 1 QQDSQPEEVMDVLEMVENVK 20 0 Q9H307 Q9H307 PNN Pinin 1 0 QQDS(1)QPEEVMDVLEMVENVK 70.145 0.00099008 0 763.17 672.36 524.52 575.8 531.71 502.56 526.85 751.35 508.07 726.76 TRUE FALSE FALSE 673.7123695 693.0746147 552.8771378 599.2836128 492.4868126 492.9745053 547.170781 836.8806469 487.1271396 722.4371992 0.932554927 0.959356212 0.765294393 0.829530392 0.681701902 0.682376968 0.757395635 1.158413005 0.674283024 1 9.496728371 -6.770591043 23.57138869 0.966601471 0.79887008 0 0.157522969 91.29821596 235151.2084 0.02010336 0.026650597 1.70E-07 6.770591043 -0.167731391 LFDVCGSQDFESDLDR ddPTM_HeLa_CUDC101_4h_R1 1 LFDVCGSQDFESDLDR 16 0 E7EN38;A0A494C1B7;A0A1W2PQ90;Q92878-3;Q92878;Q92878-2 E7EN38 RAD50 DNA repair protein RAD50 0 0 157.35 0.00046521 4770000 1232.1 1167.1 841.57 1312.4 1067.1 1010.6 913.1 747.04 1489.2 580.93 FALSE FALSE TRUE 1087.675106 1203.056968 887.0678198 1365.925345 988.382159 991.3244888 948.3185729 832.080014 1427.814546 577.4746025 1.88350293 2.083307149 1.536115729 2.365342716 1.711559529 1.716654697 1.642182303 1.440894561 2.472514877 1 9.173613688 -9.18653014 0.881817106 0.988740961 1.80711826 0 0.520580323 0.338726538 0.464830638 0.180994722 0.048666672 6.51E-10 9.18653014 0.8183773 TQT(ph)PPVS(ph)PAPQPTEER ddPTM_HeLa_CUDC101_4h_R1 3 TQTPPVSPAPQPTEER 16 0 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 2 0 T(0.015)QT(0.985)PPVS(0.935)PAPQPT(0.065)EER;T(0.004)QT(0.996)PPVS(0.932)PAPQPT(0.068)EER;T(0.285)QT(0.715)PPVS(0.673)PAPQPT(0.327)EER ;; 122.5 0.001985 185932000 14095.3 10663.1 9681.2 9861 9605.5 9805.1 8731.4 6584 11676.4 14471.6 TRUE FALSE FALSE 12443.0703 10991.61747 10204.59496 10263.1742 8896.921402 9618.084054 9068.173023 7333.495947 11195.09385 14385.52228 0.864971744 0.764074968 0.709365622 0.713437719 0.618463566 0.668594707 0.630368008 0.509783086 0.778219493 1 13.81232998 -6.770451412 0.303688819 1.029528411 0.502364591 0.657299677 0.076272415 0.256337498 0.063331024 0.028809481 0.051511555 1.70E-07 6.770451412 -0.52716382 IIPELVGSPTQSTSS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 IIPELVGSPTQSTSSR 16 0 Q9NSI6-3;Q9NSI6-2;Q9NSI6;H7C409 Q9NSI6-3 BRWD1 Bromodomain and WD repeat-containing protein 1 1 0 IIPELVGS(0.109)PT(0.017)QS(0.009)T(0.006)S(0.017)S(0.841)R 82.121 0.013929 12318000 1107.5 936.82 737.59 731.94 788.94 809.86 784.8 591.98 773.81 1011.7 TRUE FALSE FALSE 977.6805289 965.6823138 777.4663465 761.7916769 730.741468 794.4132698 815.0699989 659.3686103 741.9132243 1005.682363 0.972156383 0.960225961 0.773073462 0.757487358 0.726612591 0.789924631 0.810464644 0.655643008 0.737721224 1 9.973958998 -6.770293422 3.690748189 0.986141488 0.753141394 0.383048898 0.087745895 0.04831265 1.418230519 0.006095624 0.008422817 1.70E-07 6.770293422 -0.233000094 LFEEPEDPSNR ddPTM_HeLa_CUDC101_4h_R1 2 LFEEPEDPSNR 11 0 P63151;P63151-2;E5RFR9;A0A590UJJ1;Q9Y2T4-3;Q9Y2T4-4;Q9Y2T4-2;Q9Y2T4;A0A590UJY3 P63151;A0A590UJY3 PPP2R2A;PPP2R2C Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform 0 0 ; ; 125.68 0.016688 9703400 3097.7 3070.2 2530 2821 3412.8 3280.8 2772.4 3324.8 3356 2730.9 FALSE FALSE TRUE 2734.592302 3164.789223 2666.779453 2936.052573 3161.044543 3218.224206 2879.332397 3703.281793 3217.66426 2714.656485 1.007343771 1.165815727 0.982363502 1.081555839 1.164436296 1.185499611 1.060661786 1.364180629 1.185293343 1 11.40655393 -1 0.265076393 0.992992451 2.997619289 0.279118013 0.094272844 22.97215053 0.29040248 0.033130783 21.20669583 0.1 1 2.004626838 ERENMDT(ph)DDER ddPTM_HeLa_CUDC101_4h_R1 1 ERENMDTDDER 11 1 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 1 0 ERENMDT(1)DDER 96.135 0.020532 3867400 2330 1925.5 1585.9 1748.5 1703.6 1831.3 1622.5 1625.6 2022.3 1954.5 TRUE FALSE FALSE 2056.880932 1984.822373 1671.638551 1819.811388 1577.928822 1796.371004 1685.080368 1810.651733 1938.939938 1942.874547 1.058679231 1.021590599 0.860394488 0.936659235 0.812161971 0.92459444 0.867313008 0.93194475 0.997974852 1 10.92397703 -6.77016146 24.87157489 1.028024965 0.888178742 0.72756333 0.039047808 61.29508106 174786.6835 0.006105868 0.008094041 1.70E-07 6.77016146 -0.139846223 LFELEEQDLFR ddPTM_HeLa_CUDC101_4h_R1 1 LFELEEQDLFR 11 0 Q9NZN4;Q9NZN4-2 Q9NZN4 EHD2 EH domain-containing protein 2 0 0 119.34 0.024289 6550900 812.67 516.68 486.52 621.87 779.22 640 604.96 587.68 561.73 634.85 FALSE FALSE TRUE 717.4100545 532.5982984 512.8227428 647.2325466 721.738493 627.7930663 628.2935098 654.5791157 538.5752516 631.073884 1.13680834 0.843955537 0.812619181 1.025605025 1.143667186 0.994801215 0.995594218 1.037246402 0.85342662 1 9.301665111 -7.299386762 24.99685829 1.064603928 0.98202884 0 0.115398818 921.224079 606830.4782 0.01836359 0.020999778 5.02E-08 7.299386762 -0.082575088 EKDLLPS(ph)PAGPVPSKDPK ddPTM_HeLa_CUDC101_4h_R1 2 EKDLLPSPAGPVPSKDPK 18 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 EKDLLPS(1)PAGPVPSKDPK;EKDLLPS(1)PAGPVPSKDPK ; 66.137 0.01547 115670000 11228.4 10266.3 10696.3 11033.48 11551.3 11123.2 10934.7 9954.54 10791.4 11324.7 TRUE FALSE FALSE 9912.223973 10582.59253 11274.57433 11483.47301 10699.18361 10911.04349 11356.45504 11087.7246 10346.57392 11257.34018 0.880512076 0.940061539 1.001530926 1.020087589 0.950418433 0.969238143 1.008804465 0.98493289 0.919095786 1 13.45857838 -6.76991304 24.54196089 0.941735045 0.988799363 0.383175647 0.033272108 191.6986712 555209.923 0.007731036 0.010253477 1.70E-07 6.76991304 0.047064318 LFIGGLNTETNEK ddPTM_HeLa_CUDC101_4h_R1 2 LFIGGLNTETNEK 13 0 P38159;P38159-2;H0Y6E7;H3BT71;H3BR27;P38159-3;H3BNC1;Q96E39;A0A1B0GUK8 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 0 ; ; 176.78 4.13E-06 641690 262.7 231.54 276.26 130.77 151.49 232.04 240.04 174.69 175.12 211.38 FALSE FALSE TRUE 231.9067042 238.673473 291.1954512 136.1033658 140.3148845 227.6142236 249.2984232 194.5760035 167.9014795 210.1227024 1.103672767 1.135876658 1.385835267 0.647732798 0.667775937 1.083244319 1.186442114 0.926011332 0.799063964 1 7.715088234 -6.253466491 24.99679565 1.081070961 0.915060128 0.165121976 0.204245857 939.4073498 2945252.495 0.02967332 0.048632096 5.58E-07 6.253466491 -0.166010833 LFIGGLSFETTDDSLREHFEK ddPTM_HeLa_CUDC101_4h_R1 1 LFIGGLSFETTDDSLREHFEK 21 1 P51991;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 91.932 0.00031827 17118000 3056.9 2739.9 2875 2990.8 3950 3489.6 3387.7 3338 3435.4 3391.5 FALSE FALSE TRUE 2698.574816 2824.313071 3030.431196 3112.777751 3658.61637 3423.041694 3518.364724 3717.984427 3293.791358 3371.327207 0.8004488 0.837745166 0.898883736 0.923309296 1.085215449 1.015339504 1.043614134 1.102825148 0.977001387 1 11.71910094 -5.838842115 5.074669366 0.8974203 1.057025485 0.62401728 0.059066528 0.138666861 6.377113932 0.011943068 0.022183321 1.45E-06 5.838842115 0.159605186 LFIGGLSFETTDESLR ddPTM_HeLa_CUDC101_4h_R1 2 LFIGGLSFETTDESLR 16 0 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8VZ49;F8W646;Q32P51 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 0 0 ; ; 293.31 1.79E-106 76081000 3368.57 3447.8 2865.84 2738 3441.5 2903.66 2661.27 2611.41 3466.1 3306.42 FALSE FALSE TRUE 2973.711331 3554.022631 3020.775979 2849.667475 3187.627401 2848.277523 2763.916075 2908.682359 3323.225891 3286.753267 0.904756484 1.081317137 0.91907598 0.86701594 0.969840795 0.866593046 0.840925938 0.884971314 1.011096855 1 11.68244744 -5.546407326 0.721970944 0.96331701 0.850854669 0.396497257 0.057328886 0.870327046 0.738259942 0.011135419 0.05659028 2.84E-06 5.546407326 -0.112462341 LFIHNHEQHHK ddPTM_HeLa_CUDC101_4h_R1 1 LFIHNHEQHHK 11 0 Q02809;Q02809-2 Q02809 PLOD1 "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1" 0 0 77.533 0.013797 7621000 1363.3 1007.1 1831.3 1844.7 1742.5 1429.7 1701 526.4 1661.5 2472 FALSE FALSE TRUE 1203.496041 1038.127557 1930.305617 1919.934839 1613.959247 1402.430855 1766.60814 586.3232482 1593.012267 2457.296434 0.489764289 0.422467368 0.785540397 0.781319996 0.656802828 0.570721072 0.718923495 0.238605013 0.648278427 1 11.26285619 -9.348163059 1.02588885 1.004525917 0.590859361 0.102768388 0.192352743 0.380331194 0.704237402 0.115941327 0.029034754 4.49E-10 9.348163059 -0.413666555 DGDSYDPYDFS(ph)DTEEEMPQVHT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 2 0 DGDSYDPY(0.002)DFS(0.982)DT(0.024)EEEMPQVHT(0.992)PK;DGDSYDPYDFS(0.765)DT(0.238)EEEMPQVHT(0.997)PK ; 93.505 2.71E-05 122856000 11956.8 10660.2 8474.4 9222.3 10752.3 9070.8 9412.2 9166.2 11065.3 10636.1 TRUE FALSE FALSE 10555.24203 10988.62813 8932.551698 9598.425256 9959.124251 8897.789603 9775.231707 10209.64316 10609.18365 10572.836 0.998335927 1.039326452 0.844858626 0.90783828 0.941953913 0.841570757 0.924560988 0.965648493 1.003437833 1 13.36807479 -6.769513287 24.99996701 1.002200652 0.904328049 0.64797542 0.03804253 85.04926312 263345.4151 0.005857575 0.007772831 1.70E-07 6.769513287 -0.097872603 GTGQSDDS(ph)DIWDDT(ph)ALIK ddPTM_HeLa_CUDC101_4h_R1 1 GTGQSDDSDIWDDTALIK 18 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 2 0 GTGQSDDS(1)DIWDDT(1)ALIK 153.92 0.00018105 7395800 7378.8 6728.1 5610 5727.4 6955.9 5925 6063.3 6676.4 6365.2 6789.8 TRUE FALSE FALSE 6513.86825 6935.384786 5913.293569 5960.988128 6442.777115 5811.990497 6297.163512 7436.414389 6102.823762 6749.413968 0.965101308 1.027553625 0.876119556 0.88318603 0.954568374 0.86111039 0.932994115 1.101786677 0.904200541 1 12.72054653 -6.769440852 24.99462471 0.986362107 0.930052468 0.056971673 0.070032738 256.8275602 802264.3276 0.010227039 0.013571812 1.70E-07 6.769440852 -0.056309639 FMS(ph)IY(ph)DVSTY(ph)MRTRSWLIK ddPTM_HeLa_CUDC101_4h_R1 1 FMSIYDVSTYMRTRSWLIK 19 2 Q5TAH2 Q5TAH2 SLC9C2 Sodium/hydrogen exchanger 11 3 0 FMS(0.783)IY(0.769)DVS(0.287)T(0.295)Y(0.556)MRT(0.185)RS(0.125)WLIK 42.633 0.034455 4656600 809.68 632.48 446.91 286.58 789.3 754.51 390.07 438.4 817.05 522.43 TRUE FALSE FALSE 714.7705378 651.9659591 471.0713064 298.2679711 731.0749115 740.1189788 405.1151306 488.3056839 783.3708532 519.3225631 1.376351787 1.255416201 0.90708808 0.574340482 1.407747253 1.425162378 0.780083823 0.940274347 1.50844756 1 9.020487098 -6.769365439 24.96699124 1.18851452 1.013246498 0.163261562 0.276867662 364.1131334 1146950.72 0.046128202 0.061235648 1.70E-07 6.769365439 -0.175268022 T(ph)SPQVLGSILK ddPTM_HeLa_CUDC101_4h_R1 2 TSPQVLGSILK 11 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 T(0.982)S(0.018)PQVLGSILK;T(0.98)S(0.02)PQVLGSILK ; 170.26 4.27E-06 297840000 12910.2 10674.7 8418.1 9162.8 10942.4 10065 9298.5 9164.8 10123.1 9133.5 TRUE FALSE FALSE 11396.88593 11003.57485 8873.207949 9536.498589 10135.20095 9873.026894 9657.14626 10208.08379 9705.821533 9079.173536 1.255277904 1.211957764 0.977314501 1.05037078 1.116313166 1.087436743 1.063659178 1.12434064 1.069020379 1 13.14834526 -6.769291068 24.99792602 1.130771878 1.07164022 0.145963042 0.075791436 405.1220115 1289809.116 0.017155108 0.022776755 1.70E-07 6.769291068 -0.059131658 T(ph)PS(ph)SSPPIT(ph)PPASETK ddPTM_HeLa_CUDC101_4h_R1 1 TPSSSPPITPPASETK 16 0 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 3 0 T(0.993)PS(0.817)S(0.182)S(0.008)PPIT(1)PPASETK 132.25 0.0018751 6362600 2412.6 2153.5 1482.4 1807.7 1906.5 1816.3 1525.5 1467.6 2040.1 2220.7 TRUE FALSE FALSE 2129.798685 2219.846782 1562.543028 1881.42582 1765.861293 1781.657104 1584.339046 1634.665652 1956.006215 2207.491178 0.964805072 1.005597125 0.70783659 0.852291433 0.799940363 0.807095911 0.71771025 0.740508351 0.886076572 1 11.10819196 -6.769247839 24.99999919 0.984582082 0.775144845 0.762262108 0.052335408 45.46173231 145552.7027 0.006839823 0.009081481 1.70E-07 6.769247839 -0.209437237 LFQECCPHSTDR ddPTM_HeLa_CUDC101_4h_R1 4 LFQECCPHSTDR 12 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ;;; ;;; 133.88 0.0013327 55374000 12443.8 7104.9 6720.2 6512.9 14442.7 11785.9 10396 10737.1 11195.8 2933.18 FALSE FALSE TRUE 10985.15663 7323.793548 7083.514339 6778.524213 13377.29079 11561.10359 10796.9772 11959.36806 10734.30439 2915.733315 3.767545053 2.511818728 2.429410915 2.324809398 4.58796788 3.965075796 3.70300574 4.101667324 3.681511039 1 11.50964306 -9.685328807 0.427149859 1.19E-25 3.594266466 0 1.080819093 1.621539458 0.303804393 2.702171396 0.237897814 2.06E-10 9.685328807 3.594266466 SAPT(ph)APTPPPPPPPATPR ddPTM_HeLa_CUDC101_4h_R1 1 SAPTAPTPPPPPPPATPR 18 0 A6NHN7;A6NHB5;Q14202-2;Q14202 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 0 SAPT(0.953)APT(0.047)PPPPPPPATPR 135.57 0.00035603 14677000 1999.5 1560.5 2002 1876.3 2059.6 1935.7 2224.6 1315.9 1770.7 1683.5 TRUE FALSE FALSE 1765.121641 1608.577155 2110.234176 1952.823624 1907.667411 1898.779748 2310.403567 1465.696737 1697.710997 1673.486467 1.054757045 0.961213124 1.260980723 1.16691928 1.139935965 1.134625098 1.380592919 0.875834233 1.014475486 1 10.70864117 -6.76924292 24.99916682 1.021731654 1.168124454 0.270872604 0.12099384 166.1351569 532224.6769 0.017477094 0.023207832 1.70E-07 6.76924292 0.1463928 LFQSDTNAMLGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 3 LFQSDTNAMLGKK 13 1 F8VTR4;F8W0J4;F8W1B9;O95619 F8VTR4 YEATS4 YEATS domain-containing protein 4 0 1 ;; LFQSDTNAMLGK(1)K;LFQSDTNAMLGK(1)K;LFQSDTNAMLGK(1)K 206.58 5.25E-16 1056050 666.43 627.64 352.206 531.55 404.09 459.98 448.665 551.44 362.594 168.775 FALSE TRUE FALSE 588.3120856 646.9768445 371.2473217 553.2289066 374.2810858 451.2066479 465.9701593 614.2137006 347.6477218 167.7711188 3.506635051 3.856306432 2.212820206 3.29752171 2.230902961 2.689417887 2.777415819 3.661021665 2.072154757 1 7.390350572 -6.283368052 24.01781326 2.367798109 2.870365453 0.036242487 0.821753942 1402.452133 1536060.037 0.175398229 0.268088318 5.21E-07 6.283368052 0.502567344 AQTPPGPS(ph)LSGSK ddPTM_HeLa_CUDC101_4h_R1 1 AQTPPGPSLSGSK 13 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQT(0.332)PPGPS(0.632)LS(0.036)GSK 88.78 0.0031228 0 1345.3 1343.4 890.11 1185.9 1140.7 1079.9 1029.8 1258.4 1202.7 1234.8 TRUE FALSE FALSE 1187.605973 1384.788562 938.232039 1234.266128 1056.552834 1059.302707 1069.519731 1401.651169 1153.124197 1227.455355 0.967534965 1.128178354 0.764371621 1.005548693 0.860766813 0.863007117 0.871330861 1.141916212 0.939442883 1 10.26145484 -6.768928726 24.99999868 0.995004091 0.914612608 0.145786243 0.105615556 261.4927983 872881.7057 0.015518487 0.020615343 1.70E-07 6.768928726 -0.080391483 LGSGGS(ph)GDGPSVSWSR ddPTM_HeLa_CUDC101_4h_R1 1 LGSGGSGDGPSVSWSR 16 0 Q9Y6R9;Q9Y6R9-2 Q9Y6R9 CCDC61 Coiled-coil domain-containing protein 61 1 0 LGS(0.156)GGS(0.584)GDGPS(0.243)VS(0.017)WSR 162.7 4.34E-05 13945000 4939.4 4370.6 3750.5 3764.5 4493.3 4067.4 3647.5 4381.8 4551 4534.3 TRUE FALSE FALSE 4360.41102 4505.253006 3953.263375 3918.032582 4161.838211 3989.821122 3788.185297 4880.6064 4363.405854 4507.329782 0.967404479 0.999539245 0.877074358 0.869258024 0.923348948 0.885185091 0.840449996 1.082815466 0.968068915 1 12.13805729 -6.768461118 24.99571827 0.985297463 0.906938076 0.229901725 0.062804172 153.5883644 546737.7497 0.009338399 0.012419814 1.70E-07 6.768461118 -0.078359387 GEVLGLSSS(ph)LGK ddPTM_HeLa_CUDC101_4h_R1 2 GEVLGLSSSLGK 12 0 F1LLU8;Q9NQG7-2;Q9NQG7-3;Q9NQG7;Q9NQG7-4 F1LLU8 HPS4 Hermansky-Pudlak syndrome 4 protein 1 0 GEVLGLS(0.035)S(0.203)S(0.762)LGK;GEVLGLS(0.005)S(0.27)S(0.724)LGK ; 168.76 1.07E-06 50865000 7946.7 6799 6098.4 6274.3 7578.3 6683.4 6214.2 6204.5 6935.9 6650.8 TRUE FALSE FALSE 7015.199872 7008.469131 6428.097951 6530.193074 7019.263907 6555.92528 6453.883776 6910.795201 6649.999266 6611.240746 1.061101863 1.060083788 0.972298272 0.987740929 1.061716579 0.991633119 0.976198572 1.045309869 1.005862518 1 12.69070534 -6.768309709 24.99899954 1.032002119 1.005544601 0.132686188 0.032490566 279.1916761 1015891.716 0.005759592 0.007660849 1.70E-07 6.768309709 -0.026457519 LQSS(ph)LESEVSVLASK ddPTM_HeLa_CUDC101_4h_R1 1 LQSSLESEVSVLASK 15 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3 RAI14 Ankycorbin 1 0 LQS(0.116)S(0.884)LESEVSVLASK 102.58 0.0047371 1847000 1415.1 1348.6 875.93 1032.3 1356.8 1048.3 1085.1 1107.1 1164 1186 TRUE FALSE FALSE 1249.224123 1390.148768 923.2854253 1074.401656 1256.711567 1028.305424 1126.95267 1233.127789 1116.019427 1178.945619 1.059611319 1.179145793 0.783145049 0.911324185 1.065962286 0.872224645 0.955898773 1.045958159 0.946625026 1 10.20328146 -6.768298909 24.99999931 1.04026101 0.941315872 0.238808116 0.093510768 182.4017771 664774.5258 0.014205476 0.018899318 1.70E-07 6.768298909 -0.098945139 IPMPPS(ph)SPQPR ddPTM_HeLa_CUDC101_4h_R1 2 IPMPPSSPQPR 11 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 IPMPPS(0.5)S(0.5)PQPR;IPMPPS(0.5)S(0.5)PQPR ; 116.84 0.0050296 56770000 2818.3 2567.9 2062.71 2333.2 2673.2 2206.4 1986.39 2470.3 2205.5 2559.7 TRUE FALSE FALSE 2487.943146 2647.013955 2174.226342 2428.357981 2476.003362 2164.316596 2063.005728 2751.508967 2114.588356 2544.474791 0.977782588 1.040298754 0.854489245 0.954365117 0.973090152 0.850594631 0.810778608 1.081366173 0.831051015 1 11.31315218 -6.768211468 24.99998562 0.993024569 0.916494558 0.00303685 0.089406088 181.5975126 670389.1995 0.011043863 0.014697889 1.71E-07 6.768211468 -0.076530011 LFVGGIKEDTEEHHLR ddPTM_HeLa_CUDC101_4h_R1 2 LFVGGIKEDTEEHHLR 16 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 86.738 0.0040346 271450000 7339.7 8715.5 9101.1 8541.8 10393.4 8659.2 8394.6 10372.9 8862.2 7958.3 FALSE FALSE TRUE 6479.351492 8984.014225 9593.132995 8890.171525 9626.699589 8494.040187 8718.382534 11553.70901 8496.896365 7910.963678 0.819034413 1.13564094 1.212637725 1.12377858 1.216880772 1.073704865 1.102063274 1.460467963 1.074065905 1 12.94963773 -7.138702238 5.309120656 0.914981735 1.184576398 0.41305431 0.119590621 0.128256527 5.089646454 0.01913737 0.023544798 7.27E-08 7.138702238 0.269594663 LFVGGLK ddPTM_HeLa_CUDC101_4h_R1 1 LFVGGLK 7 0 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 0 123.34 0.026553 2192100 4451.5 3309.2 3105.2 3222.6 3144.5 3168.9 2737.8 2787.1 3225.7 3371.9 FALSE FALSE TRUE 3929.701918 3411.15253 3273.076505 3354.031557 2912.5365 3108.458512 2843.397863 3104.372198 3092.735281 3351.843789 1.172400078 1.017694363 0.976500312 1.000652706 0.868935632 0.927387643 0.848308585 0.926168519 0.922696723 1 11.7107392 -6.318895167 1.246188598 1.079355775 0.892612166 0.313596256 0.07221021 0.241871726 0.741376368 0.012350851 0.023407261 4.80E-07 6.318895167 -0.186743609 LFVGNLPADITEDEFKR ddPTM_HeLa_CUDC101_4h_R1 2 LFVGNLPADITEDEFKR 17 1 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 ; ; 197.29 1.93E-16 53835000 2836.4 2349.4 2268.9 2595.3 2407.3 2470.7 2536.1 2630.6 2685 2601.8 FALSE FALSE TRUE 2503.921492 2421.782229 2391.563597 2701.147552 2229.718275 2423.575514 2633.918227 2930.056871 2574.323164 2586.324378 0.968138998 0.936379926 0.924695919 1.044396277 0.86211857 0.937073298 1.018402119 1.13290386 0.995359741 1 11.33668751 -4.342639869 3.060264202 0.969913485 1.14487401 0.540010103 0.048168284 0.188372793 2.750959651 0.006698587 0.070877058 4.54E-05 4.342639869 0.174960525 LVTSGAESGNLNT(ph)SPSSNQTR ddPTM_HeLa_CUDC101_4h_R1 1 LVTSGAESGNLNTSPSSNQTR 21 0 Q8NHV4-2;Q8NHV4;Q8NHV4-3 Q8NHV4-2 NEDD1 Protein NEDD1 1 0 LVTSGAESGNLNT(0.803)S(0.187)PS(0.008)S(0.003)NQTR 274.82 6.43E-88 60045000 1518.4 1316.1 1072.5 1139.6 1590.5 1125.2 1100.6 1226.1 1338.5 1175.3 TRUE FALSE FALSE 1340.415454 1356.647481 1130.482594 1186.077814 1473.171984 1103.738685 1143.050511 1365.674268 1283.326463 1168.309263 1.147312185 1.16120579 0.967622726 1.015208773 1.26094351 0.944731604 0.97838008 1.168932158 1.098447563 1 10.19020651 -6.768018148 24.99874627 1.078380904 1.054850934 0.027380963 0.100399564 906.5492942 3444805.053 0.017190301 0.022907317 1.71E-07 6.768018148 -0.023529969 S(ph)APTTLYLVHTDHAYQATPPVTIPGSAK ddPTM_HeLa_CUDC101_4h_R1 2 SAPTTLYLVHTDHAYQATPPVTIPGSAK 28 0 Q6ZNC4 Q6ZNC4 ZNF704 Zinc finger protein 704 1 0 S(0.979)APT(0.01)T(0.01)LY(0.002)LVHTDHAYQATPPVTIPGSAK;S(0.31)APT(0.31)T(0.31)LY(0.052)LVHT(0.014)DHAY(0.003)QAT(0.001)PPVTIPGSAK ; 99.822 5.29E-09 26103000 3274.9 2792 2547.7 2263.1 2922.2 2530.8 2700.3 2340.7 2790.1 3019.6 TRUE FALSE FALSE 2891.021186 2878.018211 2685.436368 2355.399 2706.635128 2482.529207 2804.451476 2607.155827 2675.090897 3001.639285 0.963147438 0.95881548 0.89465659 0.784704215 0.901718985 0.827057808 0.934306627 0.868577327 0.891209983 1 11.5515349 -6.767414992 2.9071212 0.981779934 0.865233066 0.39555504 0.048099058 0.113349261 1.976872269 0.006248831 0.00873651 1.71E-07 6.767414992 -0.116546868 RINPPSSGGTSS(ph)SPIK ddPTM_HeLa_CUDC101_4h_R1 1 RINPPSSGGTSSSPIK 16 1 A0A0C4DG88;P14859-4;P14859-5;P14859-3;P14859;P14859-2;P14859-6;A0A0A0MT46 A0A0C4DG88 POU2F1 "POU domain protein;POU domain, class 2, transcription factor 1" 1 0 RINPPSSGGT(0.002)S(0.145)S(0.469)S(0.384)PIK 68.525 0.018578 38170000 1199.2 1126.2 1203 1256.4 1233.3 1205.9 1313.3 1100.5 1173.3 1277.5 TRUE FALSE FALSE 1058.631594 1160.896887 1268.037819 1307.641423 1142.321916 1182.899467 1363.954421 1225.776472 1124.936077 1269.901373 0.833632923 0.91416303 0.99853252 1.029718882 0.899535933 0.931489241 1.07406327 0.965253285 0.885845233 1 10.31050074 -6.767363054 24.75729812 0.918697038 0.983208489 0.266975514 0.059663118 191.5587551 800597.1219 0.012281975 0.016382887 1.71E-07 6.767363054 0.064511451 LGADESEEEGR ddPTM_HeLa_CUDC101_4h_R1 2 LGADESEEEGR 11 0 F5H7V1;O43847;O43847-2 F5H7V1 NRD1 Nardilysin 0 0 ; ; 162.64 0.00048272 15975900 2295.3 1808.17 1998.75 2119.43 2233.4 2182.47 1994.61 1906.88 2108.47 1900.66 FALSE FALSE TRUE 2026.248413 1863.877574 2106.808471 2205.869516 2068.646532 2140.843021 2071.542776 2123.951511 2021.557974 1889.35479 1.072455224 0.986515389 1.115094149 1.167525299 1.094895751 1.133107997 1.096428679 1.124167638 1.069972662 1 10.88367793 -6.68463011 8.107023133 1.031647495 1.122491586 0.663469587 0.03128855 0.125155469 11.67373657 0.005369984 0.007594083 2.07E-07 6.68463011 0.090844091 LGADESEEEGRR ddPTM_HeLa_CUDC101_4h_R1 2 LGADESEEEGRR 12 1 F5H7V1;O43847;O43847-2 F5H7V1 NRD1 Nardilysin 0 0 ; ; 101.35 0.010983 18559800 6102.6 4288.3 5296.9 5022.1 5776.2 5058.4 4321.2 4726 5420.2 5438.2 FALSE FALSE TRUE 5387.262479 4420.41744 5583.266436 5226.922945 5350.101234 4961.919448 4487.870132 5263.988737 5196.777062 5405.853345 0.996560975 0.817709464 1.032818702 0.966900619 0.989686714 0.917879034 0.830187178 0.973757222 0.961324093 1 12.40030666 -5.150828488 0.222319176 1.013928706 0.847714162 0.035737907 0.067284881 9.904836256 0.617032111 0.074411874 0.463166227 7.07E-06 5.150828488 -0.166214544 EVDPLVYNMSHEDPGNVS(ph)YSEIGGLSEQIR ddPTM_HeLa_CUDC101_4h_R1 1 EVDPLVYNMSHEDPGNVSYSEIGGLSEQIR 30 0 A0A087X2I1;P62333;H0YJS8;H0YJC0 A0A087X2I1 PSMC6 26S protease regulatory subunit 10B 1 0 EVDPLVYNMSHEDPGNVS(0.629)Y(0.169)S(0.196)EIGGLS(0.007)EQIR 80.733 7.83E-07 5366400 931.57 787.42 661.55 754.24 856.42 549.35 714.77 785.26 738.79 744.99 TRUE FALSE FALSE 822.3727768 811.6794769 697.3153941 785.0011673 793.2436028 538.872064 742.3389183 874.6508243 708.3367635 740.5587663 1.110476054 1.096036552 0.941607102 1.060011984 1.071142006 0.727656046 1.002403796 1.181068761 0.956489607 1 9.532470414 -6.767214726 24.98005243 1.056916964 0.991494678 0.023390283 0.117012555 313.0987553 1354243.831 0.01858776 0.024805347 1.71E-07 6.767214726 -0.065422285 S(ph)FAGNLNTYK ddPTM_HeLa_CUDC101_4h_R1 2 SFAGNLNTYK 10 0 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 1 0 S(1)FAGNLNTYK;S(1)FAGNLNTYK ; 124.38 0.0037677 94496000 5366.3 3590.9 2706.4 3101.6 3152.4 3256.8 3262.28 2730.6 2496.53 2305.47 TRUE FALSE FALSE 4737.270449 3701.531373 2852.71617 3228.096654 2919.853732 3194.681966 3388.107232 3041.440467 2393.621977 2291.756962 2.067091113 1.61515005 1.244772556 1.408568495 1.274067792 1.393988114 1.478388542 1.327121731 1.044448437 1 11.16223834 -6.767189277 24.96108158 1.526327251 1.36071521 0 0.291353002 426.0895852 1849713.525 0.064679324 0.086320007 1.71E-07 6.767189277 -0.165612041 VGS(ph)PSGDAASSTPPSTR ddPTM_HeLa_CUDC101_4h_R1 2 VGSPSGDAASSTPPSTR 17 0 F8WEJ1;C9JF34;C9J222;F8WB78;F8WDE4;Q9H980;Q6PIY2;Q9NP87-2;Q9NP87;Q9NP87-3 F8WEJ1 POLM DNA-directed DNA/RNA polymerase mu 1 0 VGS(0.88)PS(0.12)GDAAS(0.001)STPPSTR;VGS(0.92)PS(0.08)GDAASSTPPSTR ; 145.94 0.00015813 39565000 2927 2599.2 1931.38 2471.82 2282.24 2419.5 2048.06 2151.42 2508.8 2345.41 TRUE FALSE FALSE 2583.901497 2679.278271 2035.796245 2572.631504 2113.883702 2373.352069 2127.05436 2396.328956 2405.386202 2331.459397 1.10827643 1.149185045 0.873185374 1.103442551 0.906678326 1.017968433 0.91232743 1.027823585 1.031708382 1 11.18701759 -6.766932869 24.99943896 1.059913263 0.975667904 0.293352684 0.074029558 152.0936904 692140.1895 0.011966366 0.015979274 1.71E-07 6.766932869 -0.084245359 IPSLGWS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 IPSLGWSPSK 10 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 IPSLGWS(0.996)PS(0.004)K;IPSLGWS(0.997)PS(0.003)K ; 160.52 6.22E-05 193947000 8670.4 6533.4 5185 5751.6 5455.3 5512.1 5852.7 6008 5457.7 5557.9 TRUE FALSE FALSE 7654.068855 6734.68631 5465.316784 5986.175109 5052.873387 5406.965876 6078.4406 6691.926435 5232.731296 5524.841364 1.385391607 1.218982748 0.989226011 1.083501718 0.914573479 0.978664458 1.100201834 1.211243182 0.947127881 1 12.43171733 -6.766867447 24.94332531 1.189849936 1.041326067 0.046009391 0.138154394 181.3440577 833322.0372 0.026124039 0.034894894 1.71E-07 6.766867447 -0.148523869 LQQQHSEQPPLQPSPVMT(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 LQQQHSEQPPLQPSPVMTR 19 0 A0A0A0MSK5;J3KN66;Q5JTV8;Q5JTV8-3;H0YDU3;Q5JTV8-2 A0A0A0MSK5 TOR1AIP1 Torsin-1A-interacting protein 1 1 0 LQQQHSEQPPLQPS(0.387)PVMT(0.613)R 70.615 0.010744 15990000 1559.8 1428.9 1022.7 1182.4 1151.7 1310.9 1193.9 1059.7 1233.2 1416.5 TRUE FALSE FALSE 1376.962609 1472.922715 1077.990255 1230.623383 1066.741386 1285.896767 1239.949123 1180.331965 1182.366974 1408.074595 0.977904589 1.046054464 0.765577519 0.873975986 0.757588688 0.913230571 0.88059903 0.838259542 0.839704784 1 10.45950805 -6.76682669 24.99999803 0.993511153 0.841504011 0.432668189 0.068736889 51.22372674 237705.4577 0.007391456 0.009872178 1.71E-07 6.76682669 -0.152007142 T(ph)PS(ph)PPPPIPEDIALGK ddPTM_HeLa_CUDC101_4h_R1 3 TPSPPPPIPEDIALGK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 T(1)PS(1)PPPPIPEDIALGK;T(1)PS(1)PPPPIPEDIALGK;T(1)PS(1)PPPPIPEDIALGK ;; 110.84 0.0059533 23908600 6690.5 5019.8 4426 4665.3 4537 4876.1 4074.2 3333.55 5953.6 6057.3 TRUE FALSE FALSE 5906.249732 5174.454088 4665.282948 4855.571099 4202.314549 4783.096517 4231.343259 3713.027857 5708.190088 6021.27091 0.980897525 0.859362444 0.774800373 0.806403029 0.697911556 0.794366603 0.702732583 0.616651852 0.948004196 1 12.55585231 -6.766587327 0.7990138 1.001037169 0.700625758 0.838758912 0.049028306 0.132602126 0.170270258 0.009940536 0.016210131 1.71E-07 6.766587327 -0.300411411 S(ph)SDGGSEEPPDRR ddPTM_HeLa_CUDC101_4h_R1 2 SSDGGSEEPPDRR 13 1 Q9HCD6;Q9HCD6-2;Q9HCD6-3;Q9HCD6-4 Q9HCD6 TANC2 Protein TANC2 1 0 S(0.499)S(0.499)DGGS(0.001)EEPPDRR;S(0.5)S(0.5)DGGSEEPPDRR ; 141.65 1.91E-05 5265900 1255.28 1163.25 1359.05 1409.39 1477.25 1251.91 1198.71 1252.95 1211.17 1441.83 TRUE FALSE FALSE 1108.137981 1199.088354 1432.524354 1466.871016 1368.276211 1228.031903 1244.944646 1395.580763 1161.24506 1433.253931 0.773162353 0.836619616 0.999490964 1.02345508 0.954664195 0.856813909 0.868614151 0.973714939 0.810215856 1 10.48507852 -6.766364673 24.99954953 0.885669534 0.942445773 0.218430937 0.075865752 279.9112747 1420760.018 0.016288602 0.021790019 1.71E-07 6.766364673 0.056776239 AVEFSSGAKS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 AVEFSSGAKSPSK 13 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 AVEFS(0.054)S(0.173)GAKS(0.715)PS(0.058)K 63.462 0.03893 142030000 5016.2 4675.4 3901 4420.3 4348.3 3978.3 4540.9 4418.5 4317.8 4745.4 TRUE FALSE FALSE 4428.20864 4819.443532 4111.89986 4600.57894 4027.534572 3902.420556 4716.044034 4921.48418 4139.818456 4717.17415 0.938741819 1.021680222 0.871687101 0.975282827 0.853802392 0.827279306 0.999760425 1.043311954 0.877605601 1 12.20370715 -6.76621375 24.99999529 0.974059831 0.925886227 0.025997211 0.072824829 217.3209572 1137957.519 0.011036904 0.014768691 1.71E-07 6.76621375 -0.048173603 REPES(ph)PPASAPIPLFGADTIGQR ddPTM_HeLa_CUDC101_4h_R1 2 REPESPPASAPIPLFGADTIGQR 23 1 Q96AY4 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 REPES(0.995)PPAS(0.005)APIPLFGADTIGQR;REPES(1)PPASAPIPLFGADTIGQR ; 102.03 3.10E-05 14808400 2690.7 2176.33 1850.6 2073.01 2028.73 1999.9 1933.67 1730.93 2141.4 2133.22 TRUE FALSE FALSE 2375.300225 2243.380148 1950.649034 2157.556308 1879.07463 1961.75524 2008.2523 1927.972075 2053.130586 2120.531513 1.120143799 1.057932945 0.919886841 1.017460149 0.886133792 0.925124304 0.947051382 0.909192843 0.968215079 1 11.05021021 -6.76617123 24.8992495 1.05840969 0.93592352 0.475050706 0.050692688 63.22499175 332693.7014 0.008622691 0.011541091 1.71E-07 6.76617123 -0.12248617 GDS(ph)LILEHQWELEK ddPTM_HeLa_CUDC101_4h_R1 5 GDSLILEHQWELEK 14 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 GDS(1)LILEHQWELEK;GDS(1)LILEHQWELEK;GDS(1)LILEHQWELEK;GDS(1)LILEHQWELEK;GDS(1)LILEHQWELEK ;;;; 131.45 0.00050661 88311300 19964.6 15322.45 14796.76 15283.4 15002.57 16085.63 14218.32 12414.82 18267.1 17243.9 TRUE FALSE FALSE 17624.37985 15794.51652 15596.7176 15906.72311 13895.8603 15778.82341 14766.72537 13828.07293 17514.12241 17141.33252 1.028180268 0.921428746 0.909889449 0.927974712 0.810663949 0.920513233 0.861468929 0.806709333 1.021748011 1 14.06519164 -6.766031875 1.093449398 1.014286982 0.859823272 0.742934262 0.038222262 0.161896314 0.386280224 0.007190501 0.010994519 1.71E-07 6.766031875 -0.15446371 S(ph)SPELLPSGVTDENEVTTAVTEK ddPTM_HeLa_CUDC101_4h_R1 2 SSPELLPSGVTDENEVTTAVTEK 23 0 P42566;B1AUU8;P42566-2 P42566 EPS15 Epidermal growth factor receptor substrate 15 1 0 S(0.5)S(0.5)PELLPSGVTDENEVTTAVTEK;S(0.5)S(0.5)PELLPSGVTDENEVTTAVTEK ; 199.8 1.38E-19 56814000 10395 9611.5 7609.7 8739.4 9136.9 8747.9 8400.1 8119.7 9693.4 9470 TRUE FALSE FALSE 9176.513858 9907.618923 8021.1034 9095.830507 8462.88909 8581.048382 8724.094671 9044.013827 9293.833949 9413.672019 0.974807051 1.052471225 0.852069563 0.966236182 0.898999782 0.911551663 0.926747252 0.960731775 0.987269785 1 13.20054187 -6.765621097 24.99999962 0.99259851 0.920570162 0.56065891 0.035999888 63.47028888 379450.9444 0.005374754 0.007205706 1.72E-07 6.765621097 -0.072028348 ISESVLRDS(ph)PPPHEDYEDEVFVRDPHPK ddPTM_HeLa_CUDC101_4h_R1 1 ISESVLRDSPPPHEDYEDEVFVRDPHPK 28 2 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 0 IS(0.014)ES(0.036)VLRDS(0.95)PPPHEDY(0.001)EDEVFVRDPHPK 52.91 0.0065708 17882000 2740.3 2402.9 1885.1 2229.2 2475.2 1855.9 1817.8 2443.8 2353.1 2235.1 TRUE FALSE FALSE 2419.086188 2476.930501 1987.014208 2320.116411 2292.609427 1820.5018 1887.913155 2721.992314 2256.104222 2221.805526 1.088792948 1.114827771 0.894324091 1.044248196 1.031867731 0.819379454 0.849720254 1.225126269 1.015437308 1 11.11751683 -6.765605773 24.9995382 1.048568904 0.969964258 0.098543525 0.112595964 191.1173156 1146758.265 0.017715916 0.023755358 1.72E-07 6.765605773 -0.078604646 EESREPAPAS(ph)PAPAGVEIR ddPTM_HeLa_CUDC101_4h_R1 3 EESREPAPASPAPAGVEIR 19 1 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 EES(0.073)REPAPAS(0.927)PAPAGVEIR;EES(0.131)REPAPAS(0.869)PAPAGVEIR;EES(0.006)REPAPAS(0.994)PAPAGVEIR ;; 104.57 0.00037525 990552000 5056.8 4525.98 5003.3 4901.19 5789.2 5030.37 5113.8 4566.1 5200.46 4972.9 TRUE FALSE FALSE 4464.04957 4665.420079 5273.793532 5101.081713 5362.14225 4934.424073 5311.040979 5085.886367 4986.094838 4943.32097 0.903046676 0.943782552 1.066852338 1.031913919 1.084724679 0.998200219 1.074387241 1.028840004 1.008652861 1 12.27126487 -6.765478187 24.99527735 0.95215469 1.047453697 0.546520969 0.036698257 57.51710192 355960.8709 0.00666729 0.008943296 1.72E-07 6.765478187 0.095299007 IPDPDS(ph)DDVSEVDAR ddPTM_HeLa_CUDC101_4h_R1 1 IPDPDSDDVSEVDAR 15 0 P51532-5;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;P51532;A0A2R8Y4C5;P51532-4;P51532-2;P51532-3;A0A2R8Y6V2;A0A2R8Y6N0;A0A2R8YG32;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y526;A0A2R8YDA1;A0A2R8Y7Y7;A0A2R8YF58;A0A2R8YGP5;A0A2R8Y583;A0A2R8Y7R0 P51532-5 SMARCA4 Transcription activator BRG1 1 0 IPDPDS(1)DDVSEVDAR 219.53 2.16E-32 5071500 534.43 420.6 366.89 274.32 552.92 440.27 375.05 289.52 504.94 399.39 TRUE FALSE FALSE 471.7849255 433.5581875 386.7251832 285.5079553 512.1321932 431.8725833 389.5158041 322.4777865 484.1261595 397.0144105 1.188331993 1.092046475 0.974083492 0.719137512 1.289958701 1.087800775 0.981112508 0.812257132 1.219417096 1 8.633047564 -6.7651465 23.27995101 1.091652899 0.985048168 0.166110267 0.154369821 75.67448644 475223.4416 0.025197825 0.033869746 1.72E-07 6.7651465 -0.106604731 EAGENAPVLS(ph)DDELVSMSVR ddPTM_HeLa_CUDC101_4h_R1 3 EAGENAPVLSDDELVSMSVR 20 0 O60675 O60675 MAFK Transcription factor MafK 1 0 EAGENAPVLS(0.94)DDELVS(0.017)MS(0.043)VR;EAGENAPVLS(0.997)DDELVS(0.001)MS(0.003)VR;EAGENAPVLS(1)DDELVSMSVR ;; 117.35 4.09E-05 20880700 4477.8 3923 3134.43 2812.12 4222.6 3773.9 3317.4 3333 3364.95 3827.2 TRUE FALSE FALSE 3952.919072 4043.86298 3303.886767 2926.810409 3911.107211 3701.919145 3445.353229 3712.415248 3226.245337 3804.435644 1.039029029 1.062933733 0.868430189 0.769315263 1.028038736 0.973053428 0.905614801 0.97581234 0.848022056 1 11.89346674 -6.765107766 24.99896756 1.022283094 0.919855295 0.074086064 0.087161282 81.87065062 557925.2521 0.011114021 0.014924394 1.72E-07 6.765107766 -0.102427799 LGDDEDREPSLRPDDDRVPR ddPTM_HeLa_CUDC101_4h_R1 1 LGDDEDREPSLRPDDDRVPR 20 3 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 48.729 0.027324 23341000 2558.6 2153.4 2144.7 2290.2 2442.8 2295.6 2383.2 1891.5 2422.4 2850 FALSE FALSE TRUE 2258.684787 2219.743702 2260.648969 2383.604255 2262.599511 2251.815255 2475.120822 2106.820714 2322.547647 2833.048073 0.797263134 0.783517838 0.797956445 0.841356798 0.798644941 0.79483835 0.873660015 0.743658653 0.819805237 1 11.46813937 -9.171343327 0.751783574 1.010774635 0.804851065 0.084707513 0.063984797 0.220590968 0.207804656 0.027645416 0.006510668 6.74E-10 9.171343327 -0.20592357 GVQVPAS(ph)PDTVPQPSLR ddPTM_HeLa_CUDC101_4h_R1 1 GVQVPASPDTVPQPSLR 17 0 Q92613;F2Z2B6;F2Z3N8 Q92613 JADE3 Protein Jade-3 1 0 GVQVPAS(0.5)PDT(0.5)VPQPSLR 201.18 1.00E-16 15834000 3238.1 2643.6 2249.5 2225 2664.1 2300.1 2414 2554.6 2659.1 2502.9 TRUE FALSE FALSE 2858.534827 2725.046183 2371.114774 2315.745117 2467.574651 2256.229425 2507.108789 2845.405338 2549.490773 2488.012639 1.148922952 1.095270233 0.953015566 0.930760994 0.991785416 0.906840017 1.007675262 1.143645853 1.024709735 1 11.2807781 -6.765069319 24.99672603 1.074160599 0.983555953 0.223307233 0.070614317 107.7126151 741739.047 0.013056898 0.01754134 1.72E-07 6.765069319 -0.090604646 LGDEDEEIDGDTNK ddPTM_HeLa_CUDC101_4h_R1 2 LGDEDEEIDGDTNK 14 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 0 0 ; ; 350.93 3.75E-217 38379000 4293.8 3830.6 2956 3550.5 3668 3538.5 3031.2 3245.3 3410 3516.3 FALSE FALSE TRUE 3790.487273 3948.616246 3115.810301 3695.304737 3397.418948 3471.009008 3148.114399 3614.731834 3269.438357 3495.384891 1.084426291 1.12966565 0.891406926 1.057195374 0.971972774 0.993026266 0.900648855 1.034144149 0.935358611 1 11.77123561 -6.762630287 24.99999984 1.047716749 0.975819385 0.163081036 0.067878754 34.3759195 721639.4185 0.009587 0.013003885 1.73E-07 6.762630287 -0.071897364 LGDLYEEEMR ddPTM_HeLa_CUDC101_4h_R1 4 LGDLYEEEMR 10 0 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ;;; ;;; 224.86 2.91E-32 778894000 16321.5 14631 13909.9 13362 14781.8 14444.1 13066.9 13847.3 14666.7 15368.6 FALSE FALSE TRUE 14408.31851 15081.76377 14661.91127 13906.96012 13691.37606 14168.60286 13570.89471 15423.62066 14062.13242 15277.18688 0.943126416 0.987208174 0.959725857 0.910308961 0.896197459 0.92743533 0.888311102 1.009585127 0.920466086 1 13.89909129 -6.409749227 4.573895894 0.973456658 0.922845821 0.156866614 0.037749482 0.213001678 7.151936018 0.005474077 0.008424782 3.89E-07 6.409749227 -0.050610837 LGAHEGLS(ph)PTPFMNSNLMGK ddPTM_HeLa_CUDC101_4h_R1 2 LGAHEGLSPTPFMNSNLMGK 20 0 Q99081;Q99081-3;B4DGI9;H0YNQ5 Q99081 TCF12 Transcription factor 12 1 0 LGAHEGLS(0.843)PT(0.157)PFMNSNLMGK;LGAHEGLS(0.993)PT(0.007)PFMNSNLMGK ; 135.98 1.30E-05 35679000 3325.4 3105.7 2482 2710 2817.4 2978.57 3165.8 2213.12 3476.3 3113.7 TRUE FALSE FALSE 2935.601653 3201.382936 2616.184428 2820.525514 2609.566015 2921.75874 3287.905966 2465.052635 3333.005443 3095.179574 0.948443082 1.034312504 0.845244796 0.911263934 0.843106499 0.943970671 1.062266627 0.796416678 1.076837503 1 11.5958074 -6.765047125 24.99998814 0.979372821 0.907609791 0.304774737 0.077180347 114.0975186 790644.005 0.011015374 0.014800149 1.72E-07 6.765047125 -0.07176303 LGDSHDLQR ddPTM_HeLa_CUDC101_4h_R1 2 LGDSHDLQR 9 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 204.42 5.84E-17 56246000 18797.1 14930.8 13563.3 14530 15013.6 14416.1 13817.6 13963.4 14263.4 11792.8 FALSE FALSE TRUE 16593.73243 15390.80025 14296.57302 15122.5962 13906.07664 14141.13691 14350.54946 15552.93701 13675.45661 11722.6559 1.415526701 1.31291069 1.219567745 1.290031571 1.18625649 1.206308283 1.2241722 1.326741751 1.166583471 1 13.51701185 -9.512066194 1.271818376 1.000440676 1.283190743 0.411973974 0.081718522 0.228975013 0.664634263 0.055687399 0.013517701 3.08E-10 9.512066194 0.282750067 AES(ph)PAEKVPEESVLPLVQK ddPTM_HeLa_CUDC101_4h_R1 4 AESPAEKVPEESVLPLVQK 19 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 AES(0.999)PAEKVPEES(0.001)VLPLVQK;AES(0.799)PAEKVPEES(0.201)VLPLVQK;AES(0.995)PAEKVPEES(0.005)VLPLVQK;AES(1)PAEKVPEESVLPLVQK ;;; 126.91 2.59E-05 528500000 26665.1 20110.5 18536.2 18357.3 17717.9 19952.6 18039 17103.2 21400.1 20830 TRUE FALSE FALSE 23539.4574 20730.08067 19538.32304 19105.99004 16410.88582 19572.0374 18734.77027 19050.15915 20517.97882 20706.10223 1.136836723 1.001158037 0.943602172 0.922722675 0.792562774 0.945230405 0.904794638 0.920026326 0.990914591 1 14.33776838 -6.765044038 2.292163601 1.064505136 0.896731831 0.5649147 0.055147742 0.150349312 1.621672975 0.010517769 0.01491661 1.72E-07 6.765044038 -0.167773305 TAKDS(ph)DDDDDVAVTVDRDR ddPTM_HeLa_CUDC101_4h_R1 1 TAKDSDDDDDVAVTVDRDR 19 2 A0A0C4DFZ1;A8MZ54;Q16623-3;Q16623-2;Q16623 A0A0C4DFZ1 STX1A Syntaxin-1A 1 0 T(0.226)AKDS(0.774)DDDDDVAVTVDRDR 60.158 0.013716 15504000 2169.8 2033.4 2273.4 2360.4 2737.4 2229.8 2049.3 2138 2200.9 2344.3 TRUE FALSE FALSE 1915.459333 2096.046644 2396.306881 2456.667315 2535.467456 2187.27028 2128.342187 2381.381278 2110.17797 2330.355999 0.821959964 0.899453407 1.028300775 1.054202583 1.08801722 0.938599201 0.913312038 1.021895916 0.905517428 1 11.18633465 -6.765035532 24.9956971 0.912340985 1.005777924 0.382636616 0.062452965 106.5573474 740646.2119 0.013432496 0.018043282 1.72E-07 6.765035532 0.093436939 QLEMENS(ph)PLLSPR ddPTM_HeLa_CUDC101_4h_R1 1 QLEMENSPLLSPR 13 0 Q9HCM4-4;Q9HCM4-3;Q9HCM4 Q9HCM4-4 EPB41L5 Band 4.1-like protein 5 1 0 QLEMENS(0.999)PLLS(0.001)PR 158.91 6.94E-05 4378700 1509.1 1286.3 897.67 1150.9 1068.9 966.22 1118.4 1216.6 931.22 1032.3 TRUE FALSE FALSE 1332.205586 1325.929378 946.2007555 1197.838677 990.0493765 947.7909633 1161.537063 1355.092826 892.8347175 1026.159834 1.298243745 1.292127537 0.922079314 1.167302244 0.964810105 0.923628983 1.131926065 1.320547523 0.870073733 1 10.00303975 -6.765015296 24.9994457 1.156119236 1.067206833 0 0.165964995 218.6630436 1528686.431 0.026451078 0.035541833 1.72E-07 6.765015296 -0.088912403 LGDVYVNDAFGTAHR ddPTM_HeLa_CUDC101_4h_R1 3 LGDVYVNDAFGTAHR 15 0 P00558;P00558-2;P07205 P00558 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 0 ;; ;; 225.31 9.76E-33 340908230 15857.61 14084.12 13687.08 13736.92 14097.13 13962.09 13302.67 13568.99 14624.44 14744.19 FALSE FALSE TRUE 13998.80499 14518.03504 14427.04495 14297.17097 13057.21281 13695.7864 13815.75844 15113.62897 14021.61439 14656.4909 0.955126646 0.990553274 0.984345096 0.975483905 0.890882606 0.934451943 0.942637534 1.031190145 0.956682912 1 13.83925211 -5.966501302 24.99820269 0.979725182 0.946308912 0.123484454 0.034808992 260.5809853 194456.0034 0.005196377 0.009419204 1.08E-06 5.966501302 -0.03341627 VQAYEEPSVAS(ph)SPNGKESDLR ddPTM_HeLa_CUDC101_4h_R1 1 VQAYEEPSVASSPNGKESDLR 21 1 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 0 VQAYEEPS(0.006)VAS(0.495)S(0.495)PNGKES(0.003)DLR 75.956 0.0016439 15488000 942.83 1580.3 1596.3 1545.5 2786.6 1969.3 1493.5 2541.6 1878 1011.4 TRUE FALSE FALSE 832.3128966 1628.98717 1682.600807 1608.53217 2581.03807 1931.738884 1551.104795 2830.92547 1800.588045 1005.384148 0.8278556 1.620263432 1.673589951 1.599917975 2.5672158 1.921393815 1.542798142 2.815764976 1.790945331 1 9.973531132 -6.765006779 1.110326652 0.910561554 2.109893341 0.354263295 0.463975306 0.193522293 0.476299961 0.067204598 0.10255781 1.72E-07 6.765006779 1.199331787 GEDS(ph)AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK ddPTM_HeLa_CUDC101_4h_R1 1 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 41 1 Q12906-7;Q12906-4;Q12906-6 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 GEDS(0.723)AEET(0.277)EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 96.867 3.31E-16 22064000 19028 15119 13299 14141 12685 15518 13292 11440 15535 15724 TRUE FALSE FALSE 16797.56668 15584.79847 14017.98417 14717.7311 11749.25282 15222.02 13804.67689 12742.28336 14894.64072 15630.47295 1.074667845 0.997077857 0.896836853 0.941604976 0.751688888 0.973868165 0.883189967 0.815220589 0.952923227 1 13.93207381 -6.764984969 2.349656706 1.035661648 0.874360379 0.473120292 0.065390804 0.146561731 1.661470615 0.009985942 0.014140493 1.72E-07 6.764984969 -0.161301269 PS(ph)T(ph)S(ph)GVT(ph)FRSPLVT(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 PSTSGVTFRSPLVTSR 16 1 Q96K30;Q96K30-3 Q96K30 RITA1 RBPJ-interacting and tubulin-associated protein 1 5 0 PS(1)T(1)S(1)GVT(0.5)FRS(0.5)PLVT(0.549)S(0.452)R 65.949 0.0022996 0 596.66 1352.2 1270.4 1691.1 1794 1506.4 1381.2 863.52 1749.5 1905.3 TRUE FALSE FALSE 526.7204193 1393.859679 1339.081667 1760.070368 1661.660194 1477.66793 1434.473347 961.8196263 1677.38487 1893.967191 0.2781043 0.735947109 0.707024743 0.929303515 0.877343706 0.780197216 0.757390811 0.507833309 0.885646213 1 10.88719562 -6.764836533 3.384132814 0.653964006 0.776616096 0 0.206932481 0.739603169 17.82655906 0.046656769 0.06483156 1.72E-07 6.764836533 0.12265209 SRPTSEGSDIES(ph)TEPQK ddPTM_HeLa_CUDC101_4h_R1 1 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;D6RFF0;H0YA82 Q4G0J3 LARP7 La-related protein 7 1 0 SRPTSEGS(0.241)DIES(0.701)T(0.057)EPQK 154.56 4.44E-05 175350000 4331.4 3670.4 4113.3 4154.8 4601.9 4159 3984 3545.5 4112.8 4031.2 TRUE FALSE FALSE 3823.679858 3783.480674 4335.67744 4324.250703 4262.427005 4079.674004 4137.664215 3949.105389 3943.268643 4007.222243 0.954197104 0.94416542 1.081965805 1.079114269 1.063686201 1.018080295 1.032551719 0.985496972 0.984040416 1 11.96838681 -6.764744982 24.99996077 0.975201103 1.044369013 0.574177306 0.030639971 55.08107911 416574.6002 0.005544964 0.007457147 1.72E-07 6.764744982 0.06916791 QITQEEDDS(ph)DEEVAPENFFSLPEK ddPTM_HeLa_CUDC101_4h_R1 1 QITQEEDDSDEEVAPENFFSLPEK 24 0 Q92733 Q92733 PRCC Proline-rich protein PRCC 1 0 QITQEEDDS(1)DEEVAPENFFSLPEK 102.24 4.53E-06 9370200 3897.7 3602.4 2570 3071.4 3394.7 2889.8 2613.7 2864.2 3653.7 3558.8 TRUE FALSE FALSE 3440.817515 3713.385674 2708.941974 3196.664968 3144.279744 2834.68188 2714.511285 3190.248951 3503.09294 3537.632099 0.972632941 1.049681134 0.765750055 0.903617131 0.88880914 0.801293577 0.767324359 0.901803483 0.990236645 1 11.78856831 -6.764737389 24.99996167 0.991410911 0.838492609 0.711018639 0.051327007 35.75117269 271005.9255 0.007973943 0.010722976 1.72E-07 6.764737389 -0.152918301 LGEYEDVSR ddPTM_HeLa_CUDC101_4h_R1 2 LGEYEDVSR 9 0 K7EP07;K7EK42;A0A494C0X0;Q99426-2;Q99426;K7EL99 K7EP07 TBCB Tubulin-folding cofactor B 0 0 ; ; 167.23 5.30E-05 31329000 6210.1 5490.4 4850.7 5674.3 6006.5 5410.6 5227.8 5721.1 6033.4 5402.2 FALSE FALSE TRUE 5482.161492 5659.552716 5112.943515 5905.72248 5563.412462 5307.40182 5429.437997 6372.366899 5784.700698 5370.067474 1.020873856 1.053907189 0.952119045 1.099748282 1.036004201 0.988330565 1.011055824 1.186645592 1.077211921 1 12.3907245 -4.26053398 24.85355433 1.015488899 1.186645651 0.551535247 0.042246997 30.97847685 850221.7707 0.004822854 0.039047563 5.49E-05 4.26053398 0.171156752 S(ph)SATLWNSPSR ddPTM_HeLa_CUDC101_4h_R1 2 SSATLWNSPSR 11 0 Q3KQU3-4;Q3KQU3;C9JIR3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 S(0.973)S(0.027)ATLWNSPSR;S(0.977)S(0.019)AT(0.004)LWNSPSR ; 148.89 0.00076882 44237000 874.74 763.07 941.45 1040.15 878.7 1085.72 710.66 977.62 624.87 851.7 TRUE FALSE FALSE 772.2043032 786.5792822 992.3476347 1082.571813 813.8800516 1065.0117 738.0703943 1088.908309 599.1125941 846.6340505 0.912087463 0.929066439 1.172109289 1.278677384 0.961312684 1.257936294 0.871770269 1.286161723 0.707640561 1 9.725594703 -6.764703321 24.9901926 0.955119333 1.129709078 0.369300637 0.150196303 72.79035868 557316.9678 0.018871102 0.02538305 1.72E-07 6.764703321 0.174589744 SLSNS(ph)NPDISGTPTSPDDEVR ddPTM_HeLa_CUDC101_4h_R1 2 SLSNSNPDISGTPTSPDDEVR 21 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 S(0.002)LS(0.014)NS(0.983)NPDISGTPTSPDDEVR;SLSNS(0.813)NPDIS(0.18)GT(0.006)PTSPDDEVR ; 200.27 5.97E-19 55510000 2012.95 1703.95 1735.86 1852.88 1968.32 1931.32 1748.45 1519.37 1726.74 1732.03 TRUE FALSE FALSE 1776.995052 1756.44668 1829.705842 1928.448455 1823.120955 1894.483289 1815.888302 1692.328939 1655.563046 1721.727809 1.032099873 1.020165134 1.062714927 1.120065812 1.058890346 1.100338439 1.054689535 0.982924787 0.961570719 1 10.74964137 -6.764703067 4.811123174 1.015752302 1.067250403 0.350587616 0.03831033 0.168702686 10.18407109 0.005629874 0.007727898 1.72E-07 6.764703067 0.051498101 VLAET(ph)PDSFEK ddPTM_HeLa_CUDC101_4h_R1 2 VLAETPDSFEK 11 0 Q99567;J3KMX1 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 VLAET(0.985)PDS(0.015)FEK;VLAET(0.931)PDS(0.069)FEK ; 126.12 0.014087 74604400 7907.9 7008.4 6213.7 6163.1 7361.9 6647.7 6821.9 6469.9 7212.3 7118.4 TRUE FALSE FALSE 6980.94795 7224.320497 6549.631417 6414.457857 6818.827304 6520.906198 7085.022968 7206.407264 6915.005941 7076.05944 0.986558693 1.020952489 0.925604353 0.90650141 0.963647544 0.921544859 1.00126674 1.018420962 0.977239663 1 12.78873045 -6.764589889 24.99975792 0.995522847 0.954723553 0.247289321 0.0341449 90.1144152 715070.5981 0.005573975 0.007501734 1.72E-07 6.764589889 -0.040799294 LGGK(ac)LTGTANK ddPTM_HeLa_CUDC101_4h_R1 2 LGGKLTGTANK 11 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 1 ; LGGK(1)LTGTANK;LGGK(1)LTGTANK 145.28 7.69E-08 1345200 896 1036.21 897.92 750.14 1221.8 963.76 693.44 685.32 1386.47 1032.14 FALSE TRUE FALSE 790.9722382 1068.134402 946.4642713 780.7339516 1131.670248 945.3778837 720.1862131 763.3340586 1329.31912 1026.000785 0.770927517 1.041065872 0.92247909 0.760948688 1.1029916 0.921420234 0.701935343 0.743989741 1.295631679 1 10.00281612 -13.52287874 0.016577271 2.004233854 6.77E-13 0.152838826 0.164989124 7716.313921 10.32699497 788.0978949 493.0583957 3.00E-14 13.52287874 -2.004233854 LGGLGK(ac)LAAEGLAHR ddPTM_HeLa_CUDC101_4h_R1 1 LGGLGKLAAEGLAHR 15 1 B3EWG6;B3EWG5;B3EWG3 B3EWG6 FAM25G;FAM25C;FAM25A Protein FAM25G;Protein FAM25C;Protein FAM25A 0 1 LGGLGK(1)LAAEGLAHR 65.495 0.025782 12458000 0 103.17 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 106.3485454 0 0 0 0 0 0 0 0 0 LAS(ph)YLDR ddPTM_HeLa_CUDC101_4h_R1 2 LASYLDR 7 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 LAS(0.992)Y(0.008)LDR;LAS(0.994)Y(0.006)LDR ; 88.177 0.035507 8585900 7092.7 5625 4499.3 5156 5407.9 5285.1 4250.8 4376.4 5221.5 5085.3 TRUE FALSE FALSE 6261.304458 5798.299583 4742.545768 5366.283966 5008.969991 5184.295523 4414.75478 4874.591686 5006.26756 5055.052409 1.238623055 1.147030557 0.938179347 1.061568413 0.990883889 1.025567116 0.873335116 0.964300919 0.990349289 1 12.30351033 -6.764178019 24.99775566 1.118407672 0.977857219 0.315137958 0.082357042 66.06707637 603048.6165 0.016159692 0.021779788 1.72E-07 6.764178019 -0.140550452 EGHSLEMENENLVENGADS(ph)DEDDNSFLK ddPTM_HeLa_CUDC101_4h_R1 4 EGHSLEMENENLVENGADSDEDDNSFLK 28 0 Q9UHB6-4;Q9UHB6-5;Q9UHB6;F8VQE1;Q9UHB6-2;F8VS07;Q9UHB6-3 Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 1 0 EGHSLEMENENLVENGADS(0.985)DEDDNS(0.015)FLK;EGHSLEMENENLVENGADS(1)DEDDNSFLK;EGHSLEMENENLVENGADS(1)DEDDNSFLK;EGHSLEMENENLVENGADS(0.979)DEDDNS(0.021)FLK ;;; 131.23 1.52E-16 262158000 13655.32 11206.47 9418.32 9107.2 10047.78 10620.65 9816.68 9840.24 11518.73 11213.98 TRUE FALSE FALSE 12054.66409 11551.72806 9927.502868 9478.630981 9306.575287 10418.0788 10195.31264 10960.41315 11043.92307 11147.27875 1.081399718 1.036282336 0.890576354 0.850308958 0.834874187 0.934584936 0.914601031 0.983236662 0.99072817 1 13.44440394 -6.764147245 24.17869811 1.039351064 0.898132508 0.641016196 0.045693228 21.37971965 190902.1446 0.008044231 0.010846105 1.72E-07 6.764147245 -0.141218555 SMGSQEDDSGNKPSS(ph)YS ddPTM_HeLa_CUDC101_4h_R1 5 SMGSQEDDSGNKPSSYS 17 1 H7C3P9;Q9UNS2-2;Q9UNS2 H7C3P9 COPS3 COP9 signalosome complex subunit 3 1 0 SMGSQEDDSGNKPS(0.124)S(0.504)YS(0.372);SMGSQEDDSGNKPS(0.088)S(0.523)YS(0.389);SMGSQEDDSGNKPS(0.023)S(0.673)YS(0.304);SMGSQEDDSGNKPS(0.115)S(0.485)Y(0.026)S(0.373);SMGSQEDDSGNKPS(0.023)S(0.659)YS(0.319) ;;;; 170.79 2.42E-06 187827700 21175.9 18044 16626.3 16515.4 19058.2 18457.8 16757.3 17040.5 18723.8 18209.5 TRUE FALSE FALSE 18693.6931 18599.91425 17525.16807 17188.9694 17652.31456 18105.74822 17403.63467 18980.32164 17951.99704 18101.18908 1.032732878 1.027552067 0.968177725 0.949604433 0.975201931 1.000251869 0.961463614 1.048567669 0.991757887 1 14.14379685 -6.764131612 24.99581051 1.016796201 0.981651071 0.200808975 0.027857066 69.65921628 646744.4882 0.004350266 0.005862123 1.72E-07 6.764131612 -0.03514513 TIQNSSVS(ph)PTSSSSSSSSTGETQTQSSSR ddPTM_HeLa_CUDC101_4h_R1 1 TIQNSSVSPTSSSSSSSSTGETQTQSSSR 29 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 TIQNS(0.002)S(0.007)VS(0.954)PT(0.037)SSSSSSSSTGETQTQSSSR 206.51 4.36E-35 13205000 1267.3 1080.6 781.16 872.66 994.28 847.74 931.62 590.96 1213.1 1071 TRUE FALSE FALSE 1118.749015 1113.892005 823.3918725 908.2508468 920.9339453 831.5707719 967.5528955 658.2324977 1163.095505 1064.629644 1.050833988 1.046271829 0.773406862 0.853114369 0.865027524 0.781089251 0.908816414 0.618273689 1.09248837 1 10.05613593 -6.764020668 24.99935733 1.026345693 0.80941962 0.708241723 0.077190149 27.55110688 266828.9263 0.010979858 0.014807321 1.72E-07 6.764020668 -0.216926074 ALSSDSILS(ph)PAPDAR ddPTM_HeLa_CUDC101_4h_R1 2 ALSSDSILSPAPDAR 15 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 ALSSDSILS(1)PAPDAR;ALSSDSILS(1)PAPDAR ; 199.33 2.13E-16 109699000 4225.8 3726.2 2942.2 3332.4 3348.9 3080.3 3500.4 2612.5 3391.4 3790 TRUE FALSE FALSE 3730.45813 3840.999805 3101.264232 3468.309676 3101.858319 3021.54841 3635.411601 2909.89644 3251.605057 3767.456911 0.990179375 1.019520567 0.823171785 0.920597039 0.823329474 0.802012732 0.964951076 0.772376834 0.863076907 1 11.8793753 -6.763972432 24.99997741 0.997044767 0.8559185 0.387259528 0.068263667 29.22682563 288455.4034 0.007710382 0.010399949 1.72E-07 6.763972432 -0.141126267 LGGSAVISLEGKPL ddPTM_HeLa_CUDC101_4h_R1 1 LGGSAVISLEGKPL 14 1 P23528;G3V1A4;E9PK25 P23528 CFL1 Cofilin-1 0 0 151.26 0.0053434 828860 1185.2 971.44 691.8 647.47 954.89 1190.1 894.34 746.63 1068.1 818.62 FALSE FALSE TRUE 1046.272653 1001.368915 729.2008006 673.8766252 884.4496671 1167.400825 928.8349934 831.6233412 1024.072466 813.7508118 1.28574084 1.230559651 0.8960984 0.82811177 1.086880227 1.434592517 1.141424352 1.021963148 1.258459532 1 9.668443267 -9.771687494 1.753865787 0.999971335 1.144921929 0 0.18849988 0.841957201 4.693994031 0.13702047 0.029271333 1.69E-10 9.771687494 0.144950594 ESS(ph)PLYS(ph)PTFSDSTSAVK ddPTM_HeLa_CUDC101_4h_R1 3 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 ES(0.337)S(0.665)PLY(0.001)S(0.926)PT(0.062)FS(0.007)DS(0.001)TSAVK;ES(0.038)S(0.962)PLY(0.002)S(0.971)PT(0.01)FS(0.003)DS(0.003)T(0.009)S(0.002)AVK;ES(0.07)S(0.93)PLYS(0.987)PT(0.006)FS(0.006)DSTSAVK ;; 200.71 5.78E-16 243460000 8627.3 7459.6 6671.89 6852.19 8002.9 6918 7228.23 6490.83 7951.9 7529.6 TRUE FALSE FALSE 7616.020972 7689.421434 7032.592555 7131.651926 7412.542011 6786.050676 7507.025252 7229.71985 7624.119316 7484.813604 1.017529811 1.027336396 0.939581522 0.952816236 0.990344236 0.906642575 1.002967562 0.965918489 1.018611781 1 12.86975067 -6.763800645 24.9999822 1.009938645 0.960344657 0.527415177 0.025794892 39.00570783 412975.9329 0.003907293 0.005272205 1.72E-07 6.763800645 -0.049593989 LGHDPYR ddPTM_HeLa_CUDC101_4h_R1 2 LGHDPYR 7 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6 P18583-10 SON Protein SON 0 0 ; ; 114.72 0.00024773 27498000 10810.2 7868.3 11804.3 11452.5 9147.2 8776.2 9018.7 6227.5 10789.1 10192.4 FALSE FALSE TRUE 9543.044743 8110.712997 12442.47616 11919.58245 8472.42928 8608.808607 9366.55428 6936.413428 10344.36873 10131.77515 0.941892669 0.800522404 1.228064774 1.176455485 0.836223579 0.849684135 0.924473169 0.684619756 1.020982856 1 13.30659935 -3.511219542 0.80762071 0.9840187 2.84E-10 0.345357232 0.128567766 6.632577895 1.319883852 0.020768435 7.813408661 0.000308163 3.511219542 -0.9840187 LSMPQSAAVST(ph)TPPHNR ddPTM_HeLa_CUDC101_4h_R1 1 LSMPQSAAVSTTPPHNR 17 0 A2A2F0;Q86X10-4;Q86X10-2;Q86X10-3;Q86X10 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 LSMPQSAAVS(0.006)T(0.756)T(0.239)PPHNR 121 0.00043164 12850000 1874.1 1497.3 1441.7 1175.3 1730.2 1575.6 1336.6 1110.1 1318.2 1612.8 TRUE FALSE FALSE 1654.420839 1543.430038 1519.642663 1223.233814 1602.566593 1545.548055 1388.15311 1236.469297 1263.863238 1603.206994 1.031944624 0.962714137 0.947876767 0.762991815 0.99960055 0.96403525 0.865860188 0.771247444 0.788334409 1 10.64674499 -6.763440503 2.357151424 1.014181676 0.883588831 0 0.100664457 0.212190644 2.420908096 0.011722103 0.016604606 1.72E-07 6.763440503 -0.130592846 RDYS(ph)YER ddPTM_HeLa_CUDC101_4h_R1 2 RDYSYER 7 1 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 RDYS(1)YER;RDYS(1)YER ; 72.848 0.030625 18810900 3597.3 3117.5 3861.3 3668.5 4204.3 3618.1 3461.5 3154 3797.3 3956.5 TRUE FALSE FALSE 3175.629947 3213.54648 4070.053558 3818.117287 3894.157165 3549.090771 3595.011215 3513.038611 3640.773687 3932.966562 0.807438837 0.817079533 1.034855876 0.970798309 0.990132284 0.902395358 0.914071136 0.8932287 0.925706748 1 11.94140221 -6.763235137 24.99999294 0.899628449 0.949720085 0.17682606 0.064880726 107.5286075 1496995.185 0.01408117 0.019042346 1.72E-07 6.763235137 0.050091636 PNNSGEAPS(ph)SPTPK ddPTM_HeLa_CUDC101_4h_R1 1 PNNSGEAPSSPTPK 14 0 P49916-4;P49916-2;P49916-3;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 PNNSGEAPS(0.774)S(0.226)PT(0.001)PK 215.37 3.55E-24 25225000 10840 7738.2 7207.2 7215.8 5562.7 6430.8 5653 4876.1 6855.2 10752 TRUE FALSE FALSE 9569.351632 7976.60477 7596.843033 7510.091513 5152.350703 6308.143204 5871.038104 5431.175514 6572.625754 10688.04663 0.895332138 0.746310813 0.710779369 0.702662683 0.482066638 0.590205435 0.549308803 0.508154175 0.614951074 1 13.38371059 -6.763168699 0.579912734 0.984586875 0.509969367 0.387546816 0.124407626 0.117860104 0.083461448 0.012378387 0.021925528 1.73E-07 6.763168699 -0.474617508 ATST(ph)STSGAGDVGK ddPTM_HeLa_CUDC101_4h_R1 1 ATSTSTSGAGDVGK 14 0 Q96T17;Q96T17-2;Q96T17-5;Q96T17-4 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 ATS(0.042)T(0.394)S(0.249)T(0.249)S(0.066)GAGDVGK 157.09 0.00032206 6500300 2845.7 2576.2 2953.9 2958.9 3363.5 3109.9 3394.5 2470.9 3000.6 2777.6 TRUE FALSE FALSE 2512.13136 2655.569668 3113.596769 3079.576731 3115.381306 3050.583839 3525.427002 2752.177268 2876.913998 2761.078712 0.909836923 0.961787021 1.127674034 1.115352749 1.128320353 1.104852182 1.276829591 0.996776099 1.04195291 1 11.4310163 -6.763150744 6.74758904 0.956338524 1.131043987 0.489170735 0.07184804 0.069074447 15.02649391 0.010490244 0.014314387 1.73E-07 6.763150744 0.174705463 EAPAEGEAAEPGSPTAAEGEAASAASSTS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 EAPAEGEAAEPGSPTAAEGEAASAASSTSSPK 32 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 EAPAEGEAAEPGSPTAAEGEAASAASS(0.008)T(0.089)S(0.662)S(0.242)PK 162.51 5.49E-18 17563000 3170.4 2465.6 1901.9 2181.1 1839.7 2139.9 2061.1 1895.6 2738.2 2246.7 TRUE FALSE FALSE 2798.770518 2541.562214 2004.722467 2270.054686 1703.988996 2099.084973 2140.597317 2111.387442 2625.330237 2233.336528 1.253179036 1.138011303 0.897635641 1.016440942 0.762979056 0.939887449 0.95847504 0.945396009 1.17551932 1 11.12498494 -6.762910611 24.99972478 1.124281425 0.920010209 0.618692161 0.084765377 27.19290078 462074.8491 0.01763255 0.02387889 1.73E-07 6.762910611 -0.204271216 RDDIEDGDSMISSAT(ph)SDTGSAK ddPTM_HeLa_CUDC101_4h_R1 1 RDDIEDGDSMISSATSDTGSAK 22 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5;Q86U86-6 Q86U86-8 PBRM1 Protein polybromo-1 1 0 RDDIEDGDSMISS(0.015)AT(0.763)S(0.179)DT(0.039)GS(0.004)AK 105.04 3.35E-05 9113900 3405.5 3253.2 3775.5 3949.1 3758.7 3755.5 3620.6 4033.4 3157.8 3857.1 TRUE FALSE FALSE 3006.312452 3353.427236 3979.61495 4110.161367 3481.428189 3683.870095 3760.247755 4492.545952 3027.634147 3834.157798 0.784086783 0.874618994 1.037937185 1.071985449 0.908003367 0.960802943 0.980723265 1.171716499 0.789647768 1 11.904694 -6.762820326 24.99592438 0.893435472 1.014319149 0.420974055 0.088539226 40.49784782 733040.4157 0.016534653 0.022395998 1.73E-07 6.762820326 0.120883677 LEPTAPALS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 LEPTAPALSPR 11 0 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 0 LEPTAPALS(1)PR 112.84 0.0061761 156340000 2362.1 2070.6 1882.5 1880.4 1808.7 2082.3 2107.7 1961.6 2060.4 2174.6 TRUE FALSE FALSE 2085.218219 2134.392732 1984.273644 1957.09084 1675.275804 2042.583597 2188.994695 2184.900615 1975.46944 2161.665382 0.964635061 0.9873835 0.917937466 0.90536253 0.774993122 0.944912017 1.012642712 1.010748765 0.913864586 1 11.0779275 -6.762778365 24.9810337 0.983139543 0.924440915 0.052272407 0.066205977 52.14067536 972779.9589 0.010747718 0.014560511 1.73E-07 6.762778365 -0.058698628 ANTSGDFEKDDDAYKT(ph)EDSDDIHFEPVVQMPEK ddPTM_HeLa_CUDC101_4h_R1 1 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEK 33 2 P49792;A6NKT7;J3KNE0;J3KQ37;O14715;Q99666;Q7Z3J3 P49792 RANBP2;RGPD3;RGPD8;RGPD5;RGPD4 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 4 1 0 ANT(0.003)S(0.002)GDFEKDDDAY(0.424)KT(0.472)EDS(0.098)DDIHFEPVVQMPEK 69.201 6.48E-06 11805000 1216.2 1006.5 771.06 874.44 993.96 915.8 890.28 765.89 936.68 847.82 TRUE FALSE FALSE 1073.63888 1037.509072 812.7458359 910.1034429 920.637551 898.3326408 924.6183978 853.0758218 898.0696539 842.7771289 1.273929777 1.231059833 0.96436627 1.079886261 1.092385542 1.065919577 1.097109029 1.012219948 1.065607529 1 9.719007353 -6.762674265 24.99925079 1.14059788 1.057770932 0.229646164 0.080902767 58.00877536 1174350.581 0.018076414 0.024495691 1.73E-07 6.762674265 -0.082826949 LGIHEDSQNR ddPTM_HeLa_CUDC101_4h_R1 4 LGIHEDSQNR 10 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ;;; ;;; 195.57 9.61E-17 231254000 40485.6 28848.4 26871.2 27052.3 38617.8 34301.6 33183 33501.8 34418.1 31907.5 FALSE FALSE TRUE 35739.93934 29737.18501 28323.93835 28155.60972 35769.04183 33647.35413 34462.87943 37315.50949 32999.37135 31717.71277 1.12681326 0.937557674 0.893000657 0.887693571 1.127730807 1.060837973 1.086549956 1.176488032 1.040408291 1 14.95300112 -4.261421984 1.144624271 1.030483919 1.241535822 0.275454677 0.082072896 2.286248174 2.397252373 0.014631477 0.577697932 5.48E-05 4.261421984 0.211051903 LGIHEDSTNR ddPTM_HeLa_CUDC101_4h_R1 4 LGIHEDSTNR 10 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;; ;;; 218.94 9.69E-33 343280000 41962.2 30109.7 28560.7 29771 39464.1 35710.5 33626.9 35862.7 35771.4 32654.6 FALSE FALSE TRUE 37043.45453 31037.34417 30104.77783 30985.19006 36552.91197 35029.38171 34923.9008 39945.16481 34296.88775 32460.36899 1.141190186 0.956161163 0.927431781 0.954554462 1.126078141 1.079143054 1.075893525 1.230582586 1.056577261 1 14.98639178 LGIHEDSTNRR ddPTM_HeLa_CUDC101_4h_R1 2 LGIHEDSTNRR 11 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ; ; 91.265 0.015815 27944000 11393.5 8353 8442.5 8189.9 12207.1 10855.2 10844.4 10692.2 11755 9294.6 FALSE FALSE TRUE 10057.9712 8610.346029 8898.927087 8523.919522 11306.60655 10648.15515 11262.67214 11909.35683 11270.45392 9239.315306 1.088605689 0.931924688 0.963158718 0.922570476 1.223749399 1.152483143 1.21899424 1.288986947 1.219836487 1 13.17357023 -5.744383335 24.99993601 1.01964474 1.216008545 0.561345569 0.086577906 114.2957339 167528.2679 0.010011601 0.019982869 1.80E-06 5.744383335 0.196363805 LGILGMQEARLCGSSK ddPTM_HeLa_CUDC101_4h_R1 1 LGILGMQEARLCGSSK 16 1 Q8NFZ3-3;H0Y7G6;Q8NFZ3-4 Q8NFZ3-3 NLGN4Y 0 0 62.042 0.021217 2804500 66.94 120.11 61.944 144.61 266.26 163.74 56.231 223.38 193.61 134.45 FALSE FALSE TRUE 59.09339467 123.8104467 65.29288001 150.5078209 246.6185303 160.6169323 58.39984851 248.8086763 185.6293139 133.6502854 0.442149409 0.926376224 0.488535283 1.126131683 1.845252552 1.201770215 0.436960148 1.861639693 1.3889182 1 7.062319108 -6.068863612 6.708130472 0.732139913 1.289212765 0.180419511 0.453419234 0.238813972 19.47428764 0.06223057 0.104128419 8.53E-07 6.068863612 0.557072852 LGIYDADGDGDFDVDDAK ddPTM_HeLa_CUDC101_4h_R1 3 LGIYDADGDGDFDVDDAK 18 0 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797;E5RHK2;G3XAN5;E5RG29;Q12797-4;Q12797-3;Q12797-9;Q12797-5;Q12797-8;Q12797-10 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 0 0 ;; ;; 178.67 1.78E-11 37907600 5349.02 4052.94 3971.92 4284.83 4215.86 4415.39 4458.1 4009.13 3685.08 4875.61 FALSE FALSE TRUE 4722.015984 4177.806277 4186.65401 4459.583888 3904.864407 4331.173792 4630.05041 4465.513154 3533.179443 4846.609655 0.974292613 0.862005933 0.863831484 0.920145051 0.805689891 0.893650222 0.955317374 0.921368435 0.729000207 1 12.24276018 -7.358818291 4.93228577 0.988775783 0.888774284 0 0.090798133 0.119418091 4.653143894 0.00697694 0.007946479 4.38E-08 7.358818291 -0.100001499 LGK(ac)ELQQK ddPTM_HeLa_CUDC101_4h_R1 1 LGKELQQK 8 1 O75116;Q14DU5;E9PF63 O75116 ROCK2 Rho-associated protein kinase 2 0 1 LGK(1)ELQQK 92.439 0.028237 0 3859.4 3600.5 1984.8 4467.3 3410.5 3860.2 3066.7 2204.4 859.02 548.22 FALSE TRUE FALSE 3407.006982 3711.427137 2092.104292 4649.495803 3158.91421 3786.573117 3184.983646 2455.339986 823.610832 544.9591631 6.251857411 6.81046836 3.839011129 8.531824251 5.796607203 6.948361223 5.844444616 4.505548584 1.51132578 1 9.090004314 -9.177659358 0.691292579 0.575239576 6.171311288 0.703803522 1.242460265 0.351897826 0.269889096 1.153949671 0.249716508 6.64E-10 9.177659358 5.596071712 LGK(ac)TIVITK ddPTM_HeLa_CUDC101_4h_R1 2 LGKTIVITK 9 1 R4GNG8;Q96NC0 R4GNG8 ZMAT2 Zinc finger matrin-type protein 2 0 1 ; LGK(1)TIVITK;LGK(1)TIVITK 115.78 0.00041606 0 849.1 1143.99 1155.78 779.48 901.94 768.82 812.25 591.07 1026.6 1227.05 FALSE TRUE FALSE 749.5697852 1179.234976 1218.264963 811.2705636 835.4056831 754.1560394 843.5787546 658.3550196 984.2831135 1219.751452 0.614526659 0.966783006 0.998781318 0.665111374 0.68489829 0.61828665 0.691598894 0.539745223 0.806953836 1 10.25237149 -6.096644821 8.873280552 0.839175408 0.641394452 0.499641833 0.115938618 0.373480335 31.61818714 0.024255144 0.040292446 8.00E-07 6.096644821 -0.197780955 LPLLPPES(ph)PGPLR ddPTM_HeLa_CUDC101_4h_R1 1 LPLLPPESPGPLR 13 0 A0A0G2JMS7;A0A0G2JNZ2;A0A669KB89;Q14160-2;Q14160;A0A0G2JPP5;Q14160-3;A0A669KAX5 A0A0G2JMS7 SCRIB Protein scribble homolog 1 0 LPLLPPES(1)PGPLR 137.81 0.00083073 50111000 2128.6 1845.8 1171.3 1348.1 1573.2 1641.9 1162.5 1261.9 1455 1628 TRUE FALSE FALSE 1879.088735 1902.66691 1234.624021 1403.081345 1457.14817 1610.583493 1207.338014 1405.549595 1395.024284 1618.316584 1.161137909 1.175707479 0.762906364 0.867000536 0.900409836 0.995221522 0.74604563 0.868525732 0.862021868 1 10.66027815 -6.762594274 24.99959224 1.085690122 0.860409378 0.425511859 0.106599927 16.38339444 354648.5231 0.014844588 0.020131633 1.73E-07 6.762594274 -0.225280745 SRS(ph)S(ph)S(ph)VGSSSSYPISPAVSR ddPTM_HeLa_CUDC101_4h_R1 2 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 3 0 S(0.024)RS(0.962)S(0.935)S(0.749)VGS(0.228)S(0.043)S(0.033)S(0.026)YPISPAVSR;S(0.234)RS(0.932)S(0.987)S(0.817)VGS(0.027)S(0.001)S(0.001)SYPISPAVSR ; 124.84 0.00013648 50788000 7705 6546.4 5479 5236.5 6198.6 5475.2 5864 6538 7564.5 6527.2 TRUE FALSE FALSE 6801.83158 6748.086825 5775.211313 5450.067104 5741.341627 5370.769682 6090.176444 7282.259492 7252.688108 6488.375924 1.048310341 1.040027104 0.890085806 0.839974004 0.88486575 0.827752545 0.93862879 1.122354743 1.117797149 1 12.66364169 -6.762588385 24.99972937 1.024741691 0.909191175 0.367807613 0.082913142 26.9604402 586602.1699 0.012576385 0.017054763 1.73E-07 6.762588385 -0.115550516 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSR ddPTM_HeLa_CUDC101_4h_R1 8 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSR 34 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ;;;;;;; ;;;;;;; 237.58 3.32E-62 746391200 34954.86 28538.73 25551.69 26112.2 26883.54 28535.89 24929.52 23558.5 31509.08 29644.07 FALSE FALSE TRUE 30857.5043 29417.97444 26933.09165 27177.16838 24900.39481 27991.61544 25891.05994 26240.30441 30210.26239 29467.74575 1.047162024 0.99831099 0.913985477 0.92226832 0.845005079 0.949906914 0.878623705 0.890475459 1.025197606 1 14.84684908 -6.77329776 2.889320333 1.022486358 0.89752921 0.81556132 0.027690356 0.08084973 1.391913717 0.004766321 0.006652884 1.69E-07 6.77329776 -0.124957148 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD ddPTM_HeLa_CUDC101_4h_R1 6 LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD 39 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ;;;;; ;;;;; 147.57 5.01E-32 29979600 10064.12 11614.84 9801.24 9661.35 13312.8 11072.1 11229.6 14015.7 11171.94 11722.1 FALSE FALSE TRUE 8884.41911 11972.67945 10331.12468 10055.38161 12330.74127 10860.91814 11662.72943 15611.19063 10711.4279 11652.37643 0.762455553 1.027488215 0.886610963 0.862946857 1.058216866 0.932077521 1.000888489 1.339743076 0.919248359 1 13.50833659 -1.00000113 0.86408627 0.900844299 169.5183287 0.674339926 0.083549455 363.0742849 0.898343663 0.016180213 120510.9483 0.09999974 1.00000113 168.6174844 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR ddPTM_HeLa_CUDC101_4h_R1 4 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR 34 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;; ;;; 169.68 1.55E-25 857291700 12086.4 10818.9 9398 8868.9 10763.4 10551.4 9036.8 9597.6 11677.8 11122.9 FALSE FALSE TRUE 10669.65051 11152.21749 9906.084307 9230.612077 9969.405426 10350.14962 9385.352403 10690.15199 11196.43614 11056.7405 0.964990588 1.008635184 0.8959317 0.834840257 0.901658624 0.936094107 0.848835369 0.966844794 1.012634433 1 13.43263852 -6.751419087 24.96385702 0.984893403 0.89427466 0.611403583 0.038245662 102.9168275 256398.9656 0.005655376 0.007943064 1.77E-07 6.751419087 -0.090618743 AGQTQPNPGILPIQPALT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 AGQTQPNPGILPIQPALTPR 20 0 Q2M2I8-2;Q2M2I8;E9PG46 Q2M2I8-2 AAK1 AP2-associated protein kinase 1 1 0 AGQTQPNPGILPIQPALT(1)PR 113.51 0.00012092 0 524.79 461.42 497.66 453.84 659.27 364 521.25 503.31 572.85 523.7 TRUE FALSE FALSE 463.2749117 475.6358033 524.5650049 472.3495569 610.6369656 357.0573065 541.3547871 560.604776 549.2368805 520.5850091 0.889912125 0.913656358 1.007645237 0.907343755 1.172982231 0.685877043 1.039896996 1.076874605 1.055037834 1 9.023989958 -6.762565375 24.99996445 0.943984685 0.97627089 0 0.127374565 142.6832841 3167935.182 0.018905387 0.025653136 1.73E-07 6.762565375 0.032286205 SPLELGEKLS(ph)PLPGGPGAGDPR ddPTM_HeLa_CUDC101_4h_R1 1 SPLELGEKLSPLPGGPGAGDPR 22 1 Q15742;Q15742-3;Q15742-2 Q15742 NAB2 NGFI-A-binding protein 2 1 0 SPLELGEKLS(1)PLPGGPGAGDPR 57.694 0.0097508 41472000 1285.9 1264.9 759.74 915.25 1032.3 1174.5 788.59 705.32 1171.9 1234.5 TRUE FALSE FALSE 1135.168751 1303.87007 800.8138425 952.577851 956.1492856 1152.098369 819.0061805 785.6107778 1123.593786 1227.157139 0.925039439 1.06251272 0.652576444 0.776247655 0.779157987 0.938835242 0.667401227 0.640187595 0.915607097 1 10.26110428 -6.762545626 25 0.970956203 0.751130023 0.619136608 0.089487068 15.50279 350349.8909 0.014319954 0.019423132 1.73E-07 6.762545626 -0.219826181 DKAIT(ph)PPLPESTVPFSNGVLK ddPTM_HeLa_CUDC101_4h_R1 2 DKAITPPLPESTVPFSNGVLK 21 1 I3NI36;Q92667-2;Q92667 I3NI36 AKAP1 "A-kinase anchor protein 1, mitochondrial" 1 0 DKAIT(0.994)PPLPES(0.003)T(0.003)VPFSNGVLK;DKAIT(0.875)PPLPES(0.063)T(0.063)VPFSNGVLK ; 109.37 3.31E-05 61424000 6752.4 6156.9 4791.8 4745.8 5433.4 4980.3 4652.6 5704.4 4720.5 6639.4 TRUE FALSE FALSE 5960.893908 6346.586791 5050.859202 4939.354237 5032.588907 4885.309075 4832.052341 6353.765838 4525.918992 6599.908554 0.903178258 0.961617383 0.765292301 0.748397375 0.762524036 0.740208601 0.732139287 0.962705132 0.685754803 1 12.68823032 -6.762368151 24.99986858 0.953551529 0.7780486 0.060969725 0.107422332 12.46430065 335506.571 0.01091814 0.01482237 1.73E-07 6.762368151 -0.175502929 NLSLTDFVGDES(ph)PSPER ddPTM_HeLa_CUDC101_4h_R1 2 NLSLTDFVGDESPSPER 17 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 NLS(0.001)LT(0.039)DFVGDES(0.949)PS(0.012)PER;NLSLTDFVGDES(0.949)PS(0.05)PER ; 106.31 0.0014196 87571000 1292.47 1235.5 868.66 838.13 1229.77 948.44 1258.35 924.47 1172.96 1154.57 TRUE FALSE FALSE 1140.968626 1273.564291 915.6223872 872.3125641 1139.052317 930.3500872 1306.884981 1029.707928 1124.610092 1147.702566 0.994132678 1.109664061 0.797787174 0.76005107 0.992462987 0.810619506 1.138696575 0.897190577 0.979879392 1 10.16453309 -6.762236755 24.99999996 1.005584503 0.904193365 0.229346818 0.107398022 28.45631104 892197.102 0.016735803 0.022727802 1.73E-07 6.762236755 -0.101391139 LVINGNPITIFQERDPS(ph)KIK ddPTM_HeLa_CUDC101_4h_R1 2 LVINGNPITIFQERDPSKIK 20 2 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 LVINGNPIT(0.001)IFQERDPS(0.999)KIK;LVINGNPIT(0.005)IFQERDPS(0.995)KIK ; 67.895 0.0087143 479660000 2213.62 1970.72 1950.4 2122.12 2073.22 2141.16 1978.13 2030.13 2398.68 2043.3 TRUE FALSE FALSE 1954.142819 2031.435547 2055.844524 2208.669226 1920.282691 2100.32094 2054.427137 2261.231793 2299.805395 2031.146361 0.96208863 1.000142376 1.012159716 1.087400332 0.945418178 1.034056915 1.01146189 1.113278608 1.132269658 1 10.98807849 -6.762094213 2.894948847 0.982265135 1.032467687 0 0.064081547 0.288934082 4.996224486 0.006841066 0.009583429 1.73E-07 6.762094213 0.050202553 AGPVS(ph)PGCVK ddPTM_HeLa_CUDC101_4h_R1 1 AGPVSPGCVK 10 0 E9PPE7;E9PK67;E9PNI7;Q53GL7 E9PPE7 PARP10 Poly [ADP-ribose] polymerase 10 1 0 AGPVS(1)PGCVK 99.973 0.0020558 0 1845.6 1538.5 1773.5 1880.6 2212.8 1810.6 1587.1 1566.7 2064.8 1600.1 TRUE FALSE FALSE 1629.261566 1585.899361 1869.380775 1957.298997 2049.566153 1776.065822 1648.314979 1745.046795 1979.68807 1590.582534 1.024317526 0.997055687 1.175280587 1.230554815 1.28856322 1.116613432 1.036296416 1.097111755 1.244630837 1 10.63533952 -6.761973142 24.99997832 1.010722056 1.159331309 0.069852785 0.09902607 9.046030835 423700.3234 0.011611683 0.015786443 1.73E-07 6.761973142 0.148609253 YIEIDS(ph)DEEPR ddPTM_HeLa_CUDC101_4h_R1 4 YIEIDSDEEPR 11 0 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 0 YIEIDS(1)DEEPR;YIEIDS(1)DEEPR;YIEIDS(1)DEEPR;YIEIDS(1)DEEPR ;;; 167.71 1.00E-05 84216000 9956.1 7529.5 6719.4 7487.3 7203.4 8235 7415.8 5490.25 7809.7 6377.1 TRUE FALSE FALSE 8789.06105 7761.47497 7082.671089 7792.664457 6672.019533 8077.931095 7701.82989 6115.237868 7487.78086 6339.168726 1.38646902 1.224367943 1.117287044 1.229288065 1.052507012 1.274288703 1.214958968 0.964675044 1.181192864 1 12.63007795 -6.761840291 24.74075674 1.190738651 1.151366245 0.044012678 0.121213691 50.56950677 3120770.807 0.02617062 0.035602222 1.73E-07 6.761840291 -0.039372405 DELHIVEAEAMNYEGS(ph)PIK ddPTM_HeLa_CUDC101_4h_R1 18 DELHIVEAEAMNYEGSPIK 19 0 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 1 0 DELHIVEAEAMNY(0.081)EGS(0.919)PIK;DELHIVEAEAMNY(0.056)EGS(0.944)PIK;DELHIVEAEAMNY(0.12)EGS(0.88)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.004)EGS(0.996)PIK;DELHIVEAEAMNY(0.017)EGS(0.983)PIK;DELHIVEAEAMNY(0.082)EGS(0.918)PIK;DELHIVEAEAMNY(0.002)EGS(0.998)PIK;DELHIVEAEAMNY(0.438)EGS(0.562)PIK;DELHIVEAEAMNY(0.047)EGS(0.953)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.002)EGS(0.998)PIK;DELHIVEAEAMNY(0.06)EGS(0.94)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNYEGS(1)PIK;DELHIVEAEAMNY(0.069)EGS(0.931)PIK ;;;;;;;;;;;;;;;;; 210.33 1.94E-24 1974610600 105931.6 80658.7 70437.9 69352.1 63580.3 75323.8 63033.5 51273.4 86023.3 96265.1 TRUE FALSE FALSE 93514.45843 83143.69894 74245.98594 72180.5784 58890.10794 73887.12401 65464.72321 57110.1566 82477.38316 95692.5109 0.97723905 0.868863176 0.775880842 0.754297047 0.615409789 0.772130685 0.68411543 0.596809051 0.861900084 1 16.5461184 -6.761733198 1.066468218 0.995212501 0.674211838 0.764248255 0.063558352 0.095324472 0.216294236 0.008684891 0.013367864 1.73E-07 6.761733198 -0.321000663 S(ph)PSAMQQQDGLDR ddPTM_HeLa_CUDC101_4h_R1 2 SPSAMQQQDGLDR 13 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47;O60343-4;O60343-5 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 0 S(0.998)PS(0.002)AMQQQDGLDR;S(0.996)PS(0.004)AMQQQDGLDR ; 107.82 0.0052333 16071100 3210.5 2917.65 3354.6 3516.7 4225.1 3729.1 3101.29 2778.95 4078.4 3190.3 TRUE FALSE FALSE 2834.170057 3007.539338 3535.959823 3660.126226 3913.422791 3657.973631 3220.907794 3095.294435 3910.286626 3171.323954 0.893686706 0.948354499 1.114979067 1.154131927 1.234002848 1.153453158 1.01563506 0.976025938 1.233013935 1 11.63086954 -6.761715971 24.99999421 0.948285604 1.113723044 0 0.115320232 4.808046283 434593.1969 0.013257481 0.0180454 1.73E-07 6.761715971 0.16543744 QETVADFT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 QETVADFTPK 10 0 O75400-2;O75400-3;O75400;F5H578 O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 QET(0.25)VADFT(0.75)PK;QET(0.124)VADFT(0.876)PK ; 124.42 0.018137 129466000 16696.9 11377 9665.3 9864.7 9067.5 10033.1 8943.9 9439.1 11408.9 10452.4 TRUE FALSE FALSE 14739.71469 11727.51188 10187.83535 10267.0251 8398.60859 9841.735334 9288.869219 10513.60899 10938.62031 10390.22866 1.41861312 1.128705851 0.980520803 0.988142363 0.808317975 0.947210659 0.894000462 1.01187465 1.052779556 1 13.34293978 -6.761064261 3.101117173 1.200557054 0.927603936 0.428734118 0.117265837 0.198304896 3.957723431 0.026497498 0.037009443 1.73E-07 6.761064261 -0.272953118 S(ph)LESVLSLGPRPTGGGS(ph)SPPEIR ddPTM_HeLa_CUDC101_4h_R1 1 SLESVLSLGPRPTGGGSSPPEIR 23 1 Q13470-2;Q13470 Q13470-2 TNK1 Non-receptor tyrosine-protein kinase TNK1 2 0 S(0.958)LES(0.041)VLS(0.065)LGPRPT(0.137)GGGS(0.428)S(0.372)PPEIR 71.903 0.0020021 40921000 3523.3 2862.5 2313.7 2263 3201.9 2705 2462.1 2447.7 2757.9 2430.1 TRUE FALSE FALSE 3110.304115 2950.690232 2438.785621 2355.294922 2965.702216 2653.406632 2557.064022 2726.336274 2644.218195 2415.645657 1.287566372 1.221491332 1.009579204 0.975016727 1.227705813 1.098425435 1.058542677 1.128615973 1.094621716 1 11.23819313 -6.760983387 24.99999635 1.146016713 1.084243107 0.108008085 0.095190504 32.57579569 1785853.768 0.020369686 0.027828742 1.73E-07 6.760983387 -0.061773606 VIPEDAS(ph)ESEEK ddPTM_HeLa_CUDC101_4h_R1 1 VIPEDASESEEK 12 0 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 VIPEDAS(0.998)ES(0.002)EEK 89.663 0.021938 3644300 1631.4 1483.5 1153.6 1088 1100.4 1284.8 1255.6 1308.6 1502.4 1600.9 TRUE FALSE FALSE 1440.169765 1529.204877 1215.967105 1132.373343 1019.225684 1260.294581 1304.028913 1457.565734 1440.470436 1591.377776 0.904982957 0.960931402 0.764097076 0.711567901 0.640467462 0.791951855 0.81943391 0.915914346 0.905171895 1 10.63606064 -6.760912714 24.95082165 0.954312195 0.767896289 0.567678211 0.071797567 7.469282994 353846.4021 0.012475448 0.017038144 1.73E-07 6.760912714 -0.186415906 TDS(ph)YSAGQSVEILDGVELGEPAHK ddPTM_HeLa_CUDC101_4h_R1 1 TDSYSAGQSVEILDGVELGEPAHK 24 0 B1AKQ2;B1AKP8;P42345 B1AKQ2 MTOR Serine/threonine-protein kinase mTOR 1 0 T(0.193)DS(0.756)Y(0.001)S(0.05)AGQSVEILDGVELGEPAHK 176.52 1.29E-11 10383000 2123.4 1742 1473.4 1177 1791.1 1937.2 1517.2 1545.8 1200.6 1620.9 TRUE FALSE FALSE 1874.498271 1795.668955 1553.056461 1225.003147 1658.974121 1900.251138 1575.718912 1721.767624 1151.11076 1611.258815 1.163375029 1.114450974 0.963877713 0.76027708 1.029613682 1.179358102 0.977942772 1.068585387 0.714417044 1 10.65397254 -6.760881679 24.99999653 1.082102587 0.994825263 0 0.157017168 26.38257697 1182612.652 0.019038365 0.026003712 1.73E-07 6.760881679 -0.087277324 SDASS(ph)DQGPASPEK ddPTM_HeLa_CUDC101_4h_R1 1 SDASSDQGPASPEK 14 0 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 SDAS(0.017)S(0.983)DQGPASPEK 197.47 1.78E-16 14962000 3364.4 2916.2 3203.2 3058.4 3642 3220.9 3018.3 3041.5 3700.1 3320.4 TRUE FALSE FALSE 2970.030132 3006.044665 3376.374681 3183.134772 3373.336916 3159.466699 3134.716842 3387.732066 3547.580312 3300.650113 0.89983186 0.910743206 1.022942319 0.964396304 1.022021965 0.957225574 0.949727095 1.026383273 1.074812595 1 11.6885345 -6.759764665 24.99931122 0.948230079 0.987339111 0 0.054123668 68.53379292 1023028.201 0.007402404 0.010163197 1.74E-07 6.759764665 0.039109032 SSS(ph)LDALGPTR ddPTM_HeLa_CUDC101_4h_R1 2 SSSLDALGPTR 11 0 Q9H425;E5RI90;Q9H425-2;Q9H425-3 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 0 S(0.004)S(0.004)S(0.992)LDALGPTR;S(0.345)S(0.059)S(0.596)LDALGPTR ; 163.45 7.49E-05 27593000 4781.4 3919.9 3743.8 3127.2 4304.8 3931.3 3675.4 3048.6 4003.6 4257.2 TRUE FALSE FALSE 4220.93154 4040.667473 3946.201152 3254.740733 3987.24348 3856.317002 3817.161409 3395.640301 3838.569913 4231.877985 0.997413336 0.954816629 0.932494076 0.769100797 0.942192448 0.911254298 0.902001764 0.802395606 0.907060631 1 12.04708232 -6.759533598 2.291515937 0.997956238 0.873513905 0.352851723 0.057315592 0.151842349 1.636868056 0.007871249 0.011185206 1.74E-07 6.759533598 -0.124442333 S(ph)LEGEAAALR ddPTM_HeLa_CUDC101_4h_R1 1 SLEGEAAALR 10 0 P12036-2;P12036 P12036-2 NEFH Neurofilament heavy polypeptide 1 0 S(1)LEGEAAALR 112.94 0.0072773 1603300 648.34 617.27 372.05 286.31 509.53 704.5 368.78 505.62 538.64 534.19 TRUE FALSE FALSE 572.342568 636.2873571 392.1641484 297.9869593 471.942987 691.0628363 383.0039681 563.177737 516.4370312 531.0126141 1.077832339 1.19825281 0.738521342 0.561167384 0.888760407 1.301405688 0.721270941 1.06057318 0.972551343 1 9.052602322 -6.759397241 24.99853711 1.049893509 0.876713707 0.171194958 0.197079708 79.79089218 976740.0274 0.031419736 0.043188322 1.74E-07 6.759397241 -0.173179802 NQVVSS(ph)TNGELNTDDPTAGR ddPTM_HeLa_CUDC101_4h_R1 1 NQVVSSTNGELNTDDPTAGR 20 0 H0YBN6;Q9Y6M4-6;Q9Y6M4-5;Q9Y6M4-3;Q9Y6M4-4 H0YBN6 CSNK1G3 1 0 NQVVS(0.004)S(0.96)T(0.035)NGELNTDDPTAGR 154.26 1.30E-05 7996200 1645.9 1282.3 879.85 1193.7 976.4 1195 876.85 954.36 839.56 945.38 TRUE FALSE FALSE 1452.970097 1321.806143 927.4173524 1242.384246 904.3729173 1172.207366 910.6703982 1063.000485 804.9529814 939.7568377 1.546112823 1.406540597 0.986869491 1.322027354 0.962347791 1.247351782 0.969048973 1.131144188 0.856554535 1 9.876143697 -6.759376674 24.99503302 1.276241311 1.10714295 0.003525584 0.21521293 95.75670032 1160327.726 0.03663683 0.050362001 1.74E-07 6.759376674 -0.169098361 TLFLGYAFLLT(ph)MAT(ph)TS(ph)DK ddPTM_HeLa_CUDC101_4h_R1 1 TLFLGYAFLLTMATTSDK 18 0 Q12888;Q12888-3;Q12888-2;A6NNK5;H7C495 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 3 0 TLFLGYAFLLT(0.684)MAT(0.684)T(0.684)S(0.946)DK 57.288 0.0028073 0 867.93 727.79 985.94 877.02 866.83 1177.6 846.27 762.29 944.04 962.2 TRUE FALSE FALSE 766.1925611 750.2123473 1039.242899 912.7886664 802.8856779 1155.139242 878.9109174 849.0660123 905.1262716 956.4767916 0.801057138 0.784349766 1.086532269 0.954323905 0.839419926 1.207702322 0.918904593 0.887701636 0.946312843 1 9.901586153 -6.759287617 24.99880908 0.89430195 0.982004743 0.15118042 0.114235762 104.5954049 1215158.733 0.019859227 0.027303373 1.74E-07 6.759287617 0.087702793 ASLAS(ph)LDSNPSTNEK ddPTM_HeLa_CUDC101_4h_R1 1 ASLASLDSNPSTNEK 15 0 H7C0I3;A0A2R8YD85;Q96BY6-3;Q96BY6 H7C0I3 DOCK10 Dedicator of cytokinesis protein 10 1 0 ASLAS(1)LDSNPSTNEK 142.4 3.16E-05 0 1963.3 1555.4 1299.5 1280 1667.6 1415.3 1278.2 1151.7 1405.6 1442.1 TRUE FALSE FALSE 1733.16495 1603.32003 1369.754901 1332.203933 1544.58447 1388.305511 1327.500602 1282.804873 1347.660573 1433.522325 1.209025433 1.118447897 0.955516965 0.929322069 1.077475002 0.968457544 0.926041108 0.894862152 0.94010435 1 10.48534866 -6.759127077 24.94381107 1.102945042 0.961650905 0.24939139 0.082994755 48.87785077 527261.1052 0.01435833 0.019754464 1.74E-07 6.759127077 -0.141294137 HNYYESFSLS(ph)PAAVADNVER ddPTM_HeLa_CUDC101_4h_R1 1 HNYYESFSLSPAAVADNVER 20 0 B2WTI3;B2WTI4;K7EJU9;Q6NYC1-2;Q6NYC1;Q6NYC1-3 B2WTI3 JMJD6 Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 1 0 HNYYES(0.003)FS(0.055)LS(0.941)PAAVADNVER 67.832 0.0067786 2372600 572.51 485.89 605.34 576.4 659.7 583.78 611.5 644.53 848.69 542.97 TRUE FALSE FALSE 505.4012457 500.859695 638.0665115 599.9080834 611.0352453 572.6453691 635.0857598 717.9006899 813.706639 539.7403903 0.936378405 0.92796408 1.182172991 1.111475247 1.132091013 1.060964455 1.176650425 1.330085172 1.507588933 1 9.076121842 -6.759044329 24.99998927 0.965967583 1.157340882 0 0.184307193 29.99413646 313081.9276 0.011202958 0.015418087 1.74E-07 6.759044329 0.191373299 KAPAGQEEPGTPPS(ph)SPLSAEQLDR ddPTM_HeLa_CUDC101_4h_R1 1 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 1 0 KAPAGQEEPGT(0.019)PPS(0.773)S(0.19)PLS(0.018)AEQLDR 91.809 1.61E-05 14173000 2471.2 2232.7 2499.1 2404.4 2896.2 2526.4 2461.7 2448.2 2180.1 2558 TRUE FALSE FALSE 2181.529682 2301.486841 2634.208905 2502.461825 2682.553096 2478.213129 2556.648594 2726.893192 2090.235355 2542.784902 0.857929304 0.905104808 1.035954281 0.984142159 1.054966582 0.974605885 1.005452168 1.072404193 0.822026021 1 11.31219371 -6.759041947 24.99999998 0.928951046 1.018261033 0.525733442 0.054698647 54.34841992 566730.5552 0.009461484 0.013024633 1.74E-07 6.759041947 0.089309988 EAQSFISAAIEPESGKS(ph)NER ddPTM_HeLa_CUDC101_4h_R1 1 EAQSFISAAIEPESGKSNER 20 1 Q8WXA9;Q8WXA9-2 Q8WXA9 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 1 0 EAQSFISAAIEPES(0.175)GKS(0.825)NER 115.77 3.63E-05 17924000 3048 2710 2124.9 2224 2562.5 2598 2213.4 1978.5 2601.8 2643 TRUE FALSE FALSE 2690.71806 2793.491888 2239.778521 2314.704333 2373.46948 2548.447479 2298.771579 2203.724443 2494.552703 2627.279318 1.024146173 1.063264141 0.852508717 0.881027121 0.903394422 0.969994877 0.874962766 0.838785746 0.949481346 1 11.35935387 -6.758755477 25 1.01561059 0.890518182 0.666313684 0.042303506 27.74480947 258435.2496 0.006068034 0.008359575 1.74E-07 6.758755477 -0.125092408 YSSEVATES(ph)PLDFTK ddPTM_HeLa_CUDC101_4h_R1 1 YSSEVATESPLDFTK 15 0 Q8WTT2 Q8WTT2 NOC3L Nucleolar complex protein 3 homolog 1 0 YSSEVAT(0.016)ES(0.984)PLDFTK 228.49 4.45E-33 13444000 2378.6 2069.8 2352.4 2246 2452.7 2828.1 2217.3 2103.9 2539.2 2347.6 TRUE FALSE FALSE 2099.784114 2133.568085 2479.57786 2337.601588 2271.769207 2774.158704 2302.822004 2343.399472 2434.533101 2333.636371 0.899790619 0.914267583 1.06253823 1.001699158 0.973488945 1.18877077 0.986795558 1.004183643 1.043235841 1 11.18836406 -6.758201612 24.99449035 0.948475846 1.036508337 0.19291192 0.069090836 82.86949567 639721.8199 0.010686857 0.014754699 1.75E-07 6.758201612 0.088032491 LEPNS(ph)PMHGGTLLEDVVGGR ddPTM_HeLa_CUDC101_4h_R1 5 LEPNSPMHGGTLLEDVVGGR 20 0 Q7Z4H7-3;Q7Z4H7;Q5VY60 Q7Z4H7-3 HAUS6 HAUS augmin-like complex subunit 6 1 0 LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR;LEPNS(1)PMHGGTLLEDVVGGR ;;;; 131.48 1.09E-05 42565600 7056.48 6127.27 5463.44 5204.89 6199.12 6298.87 5858.28 4799.24 6791.41 6304.12 TRUE FALSE FALSE 6229.330111 6316.043926 5758.810092 5417.167912 5741.823268 6178.729549 6084.235822 5345.566082 6511.465205 6266.622814 0.994048995 1.007886403 0.918965488 0.864447737 0.916254806 0.985974381 0.970895489 0.853021833 1.039070868 1 12.61347245 -6.757918734 24.99078022 0.99791353 0.921193246 0.545426358 0.040467676 58.90484588 418125.1468 0.006148562 0.008499296 1.75E-07 6.757918734 -0.076720284 RNVSSFPDDAT(ph)SPLQENR ddPTM_HeLa_CUDC101_4h_R1 1 RNVSSFPDDATSPLQENR 18 1 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 RNVSSFPDDAT(0.789)S(0.211)PLQENR 94.271 0.03666 12574000 796.71 731.76 522.3 451.43 718.96 701.86 521.97 391.04 688.5 743.15 TRUE FALSE FALSE 703.3208615 754.3046583 550.5371179 469.8412666 665.9237532 688.4731899 542.1025577 435.554413 660.1197386 738.7297107 0.952067923 1.021083418 0.745248377 0.636012414 0.90144439 0.931969 0.733830723 0.589599155 0.89358764 1 9.528902792 -6.757899317 24.99482293 0.980011827 0.764434919 0.498893926 0.102732818 55.90853391 394743.2457 0.016233082 0.022439501 1.75E-07 6.757899317 -0.215576908 TTPQQGASGPGRS(ph)PVGQAR ddPTM_HeLa_CUDC101_4h_R1 2 TTPQQGASGPGRSPVGQAR 19 1 A0A2R8YFR7;Q12774;A0A2R8YF49;H0Y895 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 TTPQQGAS(0.038)GPGRS(0.962)PVGQAR;TTPQQGAS(0.006)GPGRS(0.994)PVGQAR ; 72.864 0.0065949 22191000 1004.3 975.34 1122.46 1121.05 1343.5 1213.59 930.03 1227.88 1191.29 1168.53 TRUE FALSE FALSE 886.5774764 1005.389069 1183.143583 1166.771265 1244.392682 1190.442793 965.9015686 1367.656896 1142.184522 1161.579532 0.763251635 0.865536145 1.018564421 1.004469546 1.071293569 1.024848287 0.831541485 1.177411325 0.9833029 1 10.18187222 -6.757788654 24.9068951 0.883378443 1.014388143 0.237846682 0.100899558 101.093791 689702.6576 0.018112105 0.02504673 1.75E-07 6.757788654 0.1310097 TEATQGLDYVPSAGTIS(ph)PTSSLEEDKGFK ddPTM_HeLa_CUDC101_4h_R1 1 TEATQGLDYVPSAGTISPTSSLEEDKGFK 29 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 TEATQGLDYVPS(0.001)AGT(0.181)IS(0.561)PT(0.194)S(0.057)S(0.006)LEEDKGFK 131.78 1.07E-16 11971000 3083.7 2785.7 2252 2402.9 2966.6 2316.5 2362.6 2510.5 2531.1 2677.1 TRUE FALSE FALSE 2722.233361 2871.524115 2373.749932 2500.900648 2747.759828 2272.316622 2453.726273 2796.285172 2426.766987 2661.17649 1.022943563 1.079043095 0.891992673 0.939772562 1.032535737 0.853876708 0.922045675 1.050770282 0.911915086 1 11.37784848 -6.757258024 24.99973148 1.016252834 0.946418716 0.125995594 0.067533507 111.5638652 667020.9682 0.008995981 0.012462998 1.75E-07 6.757258024 -0.069834119 MSFEILRGS(ph)DGEDSASGGK ddPTM_HeLa_CUDC101_4h_R1 1 MSFEILRGSDGEDSASGGK 19 1 Q14674;Q14674-2 Q14674 ESPL1 Separin 1 0 MS(0.005)FEILRGS(0.986)DGEDS(0.007)AS(0.001)GGK 56.485 0.023336 8096600 1906.2 1884.3 1296.1 1547.8 1526.1 1227.2 1630.4 1578.5 1564.4 1842.1 TRUE FALSE FALSE 1682.758126 1942.35305 1366.171086 1610.925974 1413.522643 1203.793205 1693.285074 1758.190059 1499.91477 1831.143107 0.918965928 1.060732524 0.746075542 0.87973789 0.771934557 0.65739985 0.924714768 0.960159833 0.819113899 1 10.83852883 -6.757155887 24.99991488 0.968089607 0.820629747 0.264705173 0.101280597 87.41165765 510161.369 0.014572483 0.0201969 1.75E-07 6.757155887 -0.14745986 LSRLMSGSS(ph)RSLER ddPTM_HeLa_CUDC101_4h_R1 6 LSRLMSGSSRSLER 14 2 F8WEJ8;F8WCI0;B5MC67;Q7Z6J6-2;Q7Z6J6 F8WEJ8 FRMD5 FERM domain-containing protein 5 1 0 LSRLMSGS(0.001)S(0.998)RSLER;LSRLMSGSS(1)RSLER;LSRLMSGSS(0.999)RS(0.001)LER;LSRLMSGSS(0.999)RSLER;LSRLMSGSS(0.999)RS(0.001)LER;LSRLMS(0.156)GS(0.035)S(0.808)RS(0.001)LER ;;;;; 175.49 1.72E-06 349658000 7133.39 6610.51 5529.57 5750.97 5888.04 5928.13 5885.2 5816.03 6556.97 6956.18 TRUE FALSE FALSE 6297.224838 6814.171978 5828.51528 5985.519414 5453.69102 5815.060797 6112.194135 6478.103346 6286.688921 6914.804332 0.910687351 0.985446825 0.842903863 0.865609369 0.788697808 0.840958112 0.883928719 0.936845503 0.909163675 1 12.75547271 -6.757128052 24.98888351 0.958717822 0.857091997 0.504532089 0.044129303 67.60354705 391835.0508 0.007766782 0.010764494 1.75E-07 6.757128052 -0.101625825 RDS(ph)IVAELDR ddPTM_HeLa_CUDC101_4h_R1 2 RDSIVAELDR 10 1 M0QXB4;O14579-3;O14579 M0QXB4 COPE Coatomer subunit epsilon 1 0 RDS(1)IVAELDR;RDS(1)IVAELDR ; 97.631 0.010037 10345100 2505.19 2025.31 1687.13 1662.91 1747.8 2185.4 1723.46 1629.11 1765.26 1850.74 TRUE FALSE FALSE 2211.535426 2087.707401 1778.341351 1730.730658 1618.868276 2143.717136 1789.93443 1814.561297 1692.495236 1839.731716 1.202096701 1.134789047 0.966630806 0.940751655 0.879948017 1.165233559 0.972932311 0.98631843 0.919968505 1 10.84527968 -6.757105156 24.99371528 1.101052696 0.986104985 0.086610021 0.100158503 124.4066394 717399.6898 0.016040709 0.022231464 1.75E-07 6.757105156 -0.114947711 TYS(ph)LGSALRPSTSR ddPTM_HeLa_CUDC101_4h_R1 1 TYSLGSALRPSTSR 14 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 TYS(0.973)LGS(0.007)ALRPS(0.001)T(0.017)S(0.001)R 123.1 0.0063761 69820000 1837.6 1551.7 1958.3 1683.9 2529.9 2161 1814.3 1808.8 1810.2 1754.5 TRUE FALSE FALSE 1622.199314 1599.506038 2064.171622 1752.57672 2343.274317 2119.782525 1884.278159 2014.706481 1735.58279 1744.064156 0.930125941 0.91711422 1.183541107 1.004880878 1.343571169 1.21542692 1.08039498 1.155179111 0.99513701 1 10.7682374 -6.75709269 24.9998963 0.962340236 1.163329859 0.575084359 0.085578796 60.4082115 347434.4952 0.013543349 0.018772404 1.75E-07 6.75709269 0.200989624 LGVIEDHSNR ddPTM_HeLa_CUDC101_4h_R1 4 LGVIEDHSNR 10 0 P14625;Q58FF3 P14625;Q58FF3 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein 0 0 ;;; ;;; 176.6 1.29E-07 133371000 42131 37753.1 37013.6 38627.3 40823.4 37849.3 36406.7 38692.1 38204.1 37144.2 FALSE FALSE TRUE 37192.46805 38916.22826 39014.66718 40202.68826 37811.93911 37127.38766 37810.91861 43096.65227 36629.31083 36923.26465 1.007290888 1.053975824 1.056641864 1.088817271 1.024068144 1.005528304 1.024040506 1.167195065 0.992038791 1 15.1722425 -1 0.236226957 1.000110253 1.580549579 0.375247559 0.040040923 41.00540065 0.50328208 0.025751624 9.38455923 0.1 1 0.580439326 S(ph)PART(ph)PPSEEDSAEAER ddPTM_HeLa_CUDC101_4h_R1 1 SPARTPPSEEDSAEAER 17 1 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 0 S(1)PART(1)PPSEEDSAEAER 104.86 0.0025809 21824000 2108.3 1802 1461.3 1612.2 1561.9 1701.8 1575.1 1415 1760.3 1698.5 TRUE FALSE FALSE 1861.16827 1857.517484 1540.302298 1677.952485 1446.681749 1669.341 1635.852135 1576.07788 1687.739689 1688.397246 1.102328421 1.100166142 0.912286668 0.993813801 0.856837306 0.988713411 0.968878703 0.933475747 0.999610543 1 10.72143867 -6.756715937 24.99979211 1.053560251 0.944102728 0.537294611 0.049137902 75.21377789 398082.5059 0.008515231 0.011818845 1.75E-07 6.756715937 -0.109457523 LGVTVLSR ddPTM_HeLa_CUDC101_4h_R1 2 LGVTVLSR 8 0 O75828 O75828 CBR3 Carbonyl reductase [NADPH] 3 0 0 ; ; 146.54 0.014574 10696400 4621.4 3627.5 2430.6 3248.2 3367.6 3390.2 2712.8 2579.69 2662.9 1391.89 FALSE FALSE TRUE 4079.686498 3739.258975 2562.005588 3380.675636 3119.178857 3325.537583 2817.433605 2873.351482 2553.134135 1383.610976 2.948579165 2.702536363 1.851680589 2.443371507 2.254375623 2.403520672 2.036290296 2.076704747 1.845268777 1 10.43422265 -9.466315312 1.202850794 0.999803442 2.390331896 0.407097913 0.394623115 0.216182096 0.559433135 0.247758526 0.061059913 3.42E-10 9.466315312 1.390528454 LGWDPKPGEGHLDALLR ddPTM_HeLa_CUDC101_4h_R1 1 LGWDPKPGEGHLDALLR 17 1 E9PLK3;P55786-2;P55786 E9PLK3 NPEPPS Puromycin-sensitive aminopeptidase 0 0 75.968 0.010111 9329000 3022.6 2253.6 2494.1 2626.6 2660.7 2426.5 2403.9 2312.3 2441.3 2614.4 FALSE FALSE TRUE 2668.29541 2323.030745 2628.93859 2733.724101 2464.425462 2380.218555 2496.619228 2575.522885 2340.668581 2598.849433 1.026721816 0.893868924 1.011577876 1.051897839 0.948275583 0.915873973 0.960663283 0.991024279 0.90065571 1 11.34365734 -6.197691046 0.583298028 1.009886709 0.954709612 0 0.057317035 1.339281147 0.860462405 0.011482256 0.033528196 6.34E-07 6.197691046 -0.055177097 GTAT(ph)PELHTATDYR ddPTM_HeLa_CUDC101_4h_R1 2 GTATPELHTATDYR 14 0 Q12802-4;Q12802;Q12802-2;H0YMW2 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 GT(0.018)AT(0.981)PELHTATDYR;GT(0.007)AT(0.993)PELHTATDYR ; 173.59 1.63E-06 20468100 6086.6 5373 4265.5 4558.2 4497.9 4687.6 4283.8 4121.2 5517.7 5435.2 TRUE FALSE FALSE 5373.137975 5538.535761 4496.105832 4744.103098 4166.098878 4598.19184 4449.027601 4590.34075 5290.258071 5402.871189 0.994496775 1.025109718 0.832169725 0.878070739 0.771089803 0.851064495 0.823456167 0.849611362 0.979156801 1 12.39951057 -6.756323534 24.99972827 0.999406781 0.833639435 0.895738675 0.027652056 24.51513939 119798.1946 0.003925938 0.005455227 1.75E-07 6.756323534 -0.165767346 LHDALDAK ddPTM_HeLa_CUDC101_4h_R1 1 LHDALDAK 8 0 P07954-2;P07954 P07954-2 FH "Fumarate hydratase, mitochondrial" 0 0 88.948 0.001827 0 7001.7 5562 7151.1 7051.5 6525.4 6342.5 6144.4 4620.4 6664.8 7316.3 FALSE FALSE TRUE 6180.97134 5733.358627 7537.710097 7339.090649 6044.034242 6221.52738 6381.391566 5146.36766 6390.074123 7272.782322 0.849877126 0.788330844 1.036427293 1.009117326 0.831048418 0.85545354 0.877434699 0.707620197 0.878628541 1 12.82829168 -13.52287869 0.01887156 2.078985801 4.25E-08 0.148806693 0.091080089 3449.334649 5.251537352 377.0152142 221.0970529 3.00E-14 13.52287869 -2.078985759 LHDEKEETAGSYDSR ddPTM_HeLa_CUDC101_4h_R1 2 LHDEKEETAGSYDSR 15 1 A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610;A0A2R8YEF8;H9KV28 A0A2R8Y5N1 DIAPH1 Protein diaphanous homolog 1 0 0 ; ; 113.53 0.0010655 61769000 6170.9 5034.9 5443.9 6170.2 5804.6 5834.8 4802.4 5227.3 5449.2 5617.6 FALSE FALSE TRUE 5447.556456 5190.019301 5738.213701 6421.847426 5376.406222 5723.510911 4987.630177 5822.354703 5224.58167 5584.186265 0.975532727 0.929413715 1.02758279 1.150005949 0.962791348 1.024949857 0.893170453 1.042650518 0.935603044 1 12.44713135 SRS(ph)DIDVNAAAGAK ddPTM_HeLa_CUDC101_4h_R1 4 SRSDIDVNAAAGAK 14 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 S(0.032)RS(0.968)DIDVNAAAGAK;S(0.42)RS(0.58)DIDVNAAAGAK;S(0.017)RS(0.983)DIDVNAAAGAK;S(0.033)RS(0.967)DIDVNAAAGAK ;;; 163.34 1.55E-10 1275388000 18319.21 15313.1 16636.7 16900.3 18393.1 17617.5 16730.7 15715.05 18504.5 16239.33 TRUE FALSE FALSE 16171.85997 15784.87846 17536.13033 17589.56728 17036.27766 17281.47554 17376.0087 17503.98777 17741.73668 16142.73774 1.001804045 0.977831562 1.086316993 1.089627272 1.05535244 1.070541801 1.076397881 1.084325847 1.099053764 1 13.97859765 -6.756295484 24.99998237 0.999149186 1.076345739 0.356084884 0.033551538 24.0615459 116941.4852 0.001787778 0.002484969 1.75E-07 6.756295484 0.077196553 LHDFGYR ddPTM_HeLa_CUDC101_4h_R1 2 LHDFGYR 7 0 A0A0C4DFS8;P43490 A0A0C4DFS8 NAMPT Nicotinamide phosphoribosyltransferase 0 0 ; ; 173.85 4.77E-05 23446000 2704.4 2098.23 2390.5 2322.2 2281.6 1934.97 2567.7 2382.8 2139.5 1761.18 FALSE FALSE TRUE 2387.394332 2162.873979 2519.737661 2416.909353 2113.290914 1898.063671 2666.737049 2654.04832 2051.308904 1750.704423 1.363676415 1.235430693 1.439270746 1.380535356 1.207108913 1.084171403 1.523236598 1.515988813 1.171704873 1 10.77371981 -9.346215601 0.622193215 0.942849971 1.345290785 0.320930189 0.140728113 0.828831892 0.447964849 0.191255326 0.030226502 4.51E-10 9.346215601 0.402440814 LHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALR ddPTM_HeLa_CUDC101_4h_R1 1 LHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALR 34 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 110.17 2.00E-15 23737000 2287 2045.1 2071.1 2068.3 2534 2295 1600.7 1868.4 2219.7 2383.5 FALSE FALSE TRUE 2018.921327 2108.107107 2183.069931 2152.654214 2347.071868 2251.226699 1662.439535 2081.091104 2128.203026 2369.322836 0.852109006 0.889750892 0.921389816 0.908552512 0.990608723 0.950156165 0.701651759 0.878348477 0.898232606 1 11.21025907 -9.398471525 1.028052162 1.002625604 0.885126004 0.030960843 0.078419086 0.652916913 1.18978089 0.057838653 0.013484444 4.00E-10 9.398471525 -0.1174996 LHELRIARLRQEER ddPTM_HeLa_CUDC101_4h_R1 3 LHELRIARLRQEER 14 3 Q9BYN8 Q9BYN8 MRPS26 "28S ribosomal protein S26, mitochondrial" 0 0 ;; ;; 81.431 0.011491 93719000 21960.1 18459.2 17702.4 17805.8 18771.5 18581.6 17030.4 18423.3 18162.6 19700.7 FALSE FALSE TRUE 19385.97037 19027.90607 18659.44529 18531.99749 17386.76384 18227.18694 17687.26823 20520.534 17413.92994 19583.51936 0.989912488 0.971628527 0.952813687 0.946305776 0.887826316 0.93074113 0.903171075 1.047847102 0.889213508 1 14.25735243 -6.896330727 1.500149874 0.995940323 0.937638325 0 0.052312944 0.338501838 1.521690229 0.00679098 0.009393112 1.27E-07 6.896330727 -0.058301997 LHFFMPGFAPLTSR ddPTM_HeLa_CUDC101_4h_R1 2 LHFFMPGFAPLTSR 14 0 Q5JP53;P07437;Q5ST81;A0A075B736;Q5SQY0;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885;P04350;K7ESM5;Q9BUF5 Q5JP53;P68371;Q9BVA1;P04350 TUBB;TUBB8;TUBB4B;TUBB2B;TUBB2A;TUBB4A;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-6 chain 0 0 ; ; 121.9 0.017653 3643700 542.51 127.598 40.38 192.017 236.661 319.41 188.42 60.202 0 0 FALSE FALSE TRUE 478.9178002 131.5291431 42.56306494 199.8482832 219.2029895 313.3177864 195.6874225 67.05515234 0 0 0 NIWDS(ph)EEYASVLQLLR ddPTM_HeLa_CUDC101_4h_R1 1 NIWDSEEYASVLQLLR 16 0 Q9UBD5-3;Q9UBD5;Q9UBD5-2 Q9UBD5-3 ORC3 Origin recognition complex subunit 3 1 0 NIWDS(0.878)EEY(0.003)AS(0.12)VLQLLR 71.692 0.029665 27582000 814.34 712.31 573.47 538.4 670.87 883.01 564.28 449 680.47 677.87 TRUE FALSE FALSE 718.8842997 734.2554268 604.4735229 560.3582792 621.3812567 866.1680554 586.0444686 500.1123451 652.4207386 673.8379991 1.066850342 1.089661651 0.897060605 0.831591985 0.922152294 1.285424771 0.869711221 0.742184836 0.96821601 1 9.396257977 -6.756087247 24.99904583 1.036807278 0.93423897 0.124771679 0.136455318 227.8776304 1064378.785 0.021828754 0.03034846 1.75E-07 6.756087247 -0.102568308 AVGMPS(ph)PVSPK ddPTM_HeLa_CUDC101_4h_R1 2 AVGMPSPVSPK 11 0 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 AVGMPS(0.973)PVS(0.027)PK;AVGMPS(1)PVSPK ; 114.86 0.0055967 53665000 9477.6 8163.4 9340.9 9639.5 10411.7 10364.2 9016.2 10243.1 8038.5 8172.9 TRUE FALSE FALSE 8366.650095 8414.904678 9845.897309 10032.64048 9643.649634 10166.52015 9363.957854 11409.1331 7707.149628 8124.287227 1.029831893 1.03577144 1.211909061 1.234894852 1.187014856 1.251373797 1.152588232 1.404324192 0.948655483 1 12.98802553 -6.756040011 3.53920314 1.014606418 1.237179134 0.760057469 0.065299794 0.077942282 2.077438691 0.009143313 0.012722706 1.75E-07 6.756040011 0.222572717 AGVVNGT(ph)GAPGQSPGAGR ddPTM_HeLa_CUDC101_4h_R1 1 AGVVNGTGAPGQSPGAGR 18 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;Q13330-2 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 AGVVNGT(0.637)GAPGQS(0.363)PGAGR 95.873 0.016036 5347200 2080.7 1678.1 1369.5 1544.8 1555.6 1439.6 1373.9 1401.9 1542 1500.2 TRUE FALSE FALSE 1836.8035 1729.800272 1443.539313 1607.803621 1440.846487 1412.142029 1426.891783 1561.486629 1478.438107 1491.276744 1.231698615 1.159945851 0.967988885 1.078139003 0.966183167 0.946934923 0.956825612 1.047080387 0.991390843 1 10.5423323 -6.756037461 24.98375862 1.116260317 0.992615383 0.281486277 0.077004387 132.0083098 610533.5994 0.015157046 0.021083691 1.75E-07 6.756037461 -0.123644934 KPIDSLRDS(ph)R ddPTM_HeLa_CUDC101_4h_R1 4 KPIDSLRDSR 10 2 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 KPIDSLRDS(1)R;KPIDSLRDS(1)R;KPIDS(0.003)LRDS(0.997)R;KPIDSLRDS(1)R ;;; 130.19 0.0019521 311239000 20142.9 15431.6 12509.3 14351.4 12403.5 15539.3 14157.9 11485.7 16683.8 12488.9 TRUE FALSE FALSE 17781.7798 15907.02931 13185.5906 14936.71212 11488.51852 15242.91374 14703.97495 12793.18566 15996.0867 12414.61547 1.432326264 1.281314701 1.062102216 1.203155439 0.925402687 1.227820047 1.184408408 1.030493912 1.288488294 1 13.59975196 -6.755807985 24.99614953 1.215645422 1.110951579 0.206991158 0.131877172 305.3737937 1355462.193 0.028588212 0.039785218 1.75E-07 6.755807985 -0.104693843 DAS(ph)DGEDEKPPLPPR ddPTM_HeLa_CUDC101_4h_R1 2 DASDGEDEKPPLPPR 15 1 O15357 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 DAS(1)DGEDEKPPLPPR;DAS(1)DGEDEKPPLPPR ; 168.93 4.19E-06 28961000 4010.5 3682.7 3009.25 2793.6 3101.22 3417.4 3055.32 3115.4 3314.7 3938.5 TRUE FALSE FALSE 3540.39527 3796.159622 3171.939157 2907.535083 2872.449179 3352.218789 3173.164716 3470.044543 3178.066663 3915.073627 0.904298516 0.969626624 0.810186336 0.742651444 0.733689696 0.856233907 0.810499372 0.886329319 0.811751442 1 11.93482372 -6.755781755 22.75651936 0.954656339 0.802811038 0.383747174 0.066013352 21.43684046 86223.2528 0.008878291 0.012338668 1.75E-07 6.755781755 -0.151845301 LHLGFIEIR ddPTM_HeLa_CUDC101_4h_R1 1 LHLGFIEIR 9 0 Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2;Q9Y383 Q96HJ9-2 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 0 105.52 0.0037719 423510 372.56 233.85 129.53 238.53 200.36 330.77 147.57 216.67 264.37 54.198 FALSE FALSE TRUE 328.8890816 241.0546413 136.5327836 248.2582844 185.579842 324.4611134 153.2618243 241.334837 253.4725567 53.87562789 6.104598581 4.474279944 2.534221669 4.607988698 3.444597293 6.022409874 2.844733887 4.479480731 4.704772207 1 5.751560873 -6.219565936 24.7553419 3.508693781 4.250520631 0.014902568 1.492996007 1595.196641 943070.7911 0.310833002 0.515455257 6.03E-07 6.219565936 0.74182685 T(ph)LSPEFNER ddPTM_HeLa_CUDC101_4h_R1 1 TLSPEFNER 9 0 Q9BSJ8;Q9BSJ8-2 Q9BSJ8 ESYT1 Extended synaptotagmin-1 1 0 T(0.992)LS(0.008)PEFNER 130.01 0.015869 6631600 3119.4 2756.2 2322.9 2411.6 2343.7 2449.2 2374.7 3023.1 2494 2697.4 TRUE FALSE FALSE 2753.748661 2841.115255 2448.483 2509.955472 2170.80992 2402.485591 2466.292974 3367.237484 2391.196264 2681.355745 1.026998624 1.059581617 0.91315112 0.936077011 0.809594148 0.895996585 0.919793272 1.255796621 0.89178628 1 11.38874692 -6.755275742 24.87897231 1.016618002 0.943303967 0.007083419 0.11708753 263.4544811 1063405.608 0.016943871 0.023615861 1.76E-07 6.755275742 -0.073314035 LHPEELGGPPLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 LHPEELGGPPLKK 13 1 Q15742;Q15742-3 Q15742 NAB2 NGFI-A-binding protein 2 0 1 LHPEELGGPPLK(1)K 87.216 0.022698 1887400 1040.1 1398.7 1525.8 1709 1597.5 1837.1 1708.7 1882.3 1494.9 1566.2 FALSE TRUE FALSE 918.1810547 1441.792289 1608.289363 1778.700407 1479.655608 1802.060378 1774.605131 2096.573423 1433.279589 1556.884173 0.589755533 0.9260755 1.033017993 1.142474462 0.950395433 1.157478771 1.139844031 1.346647015 0.92060772 1 10.6044459 -6.747094425 2.500947414 0.805469588 1.133274545 0.496829472 0.135368351 0.203931328 2.619948396 0.02910375 0.041307208 1.79E-07 6.747094425 0.327804957 DGGRS(ph)SPGGQDEGGFMAQGK ddPTM_HeLa_CUDC101_4h_R1 1 DGGRSSPGGQDEGGFMAQGK 20 1 F5GZ78;A0A1B0GTU4;P49023;A0A1B0GV30 F5GZ78 PXN Paxillin 1 0 DGGRS(0.952)S(0.048)PGGQDEGGFMAQGK 150.95 9.31E-06 54682000 1673.7 1805.6 1870 1950.5 2709 1968.3 1852.7 2198.7 2030.4 1746.1 TRUE FALSE FALSE 1477.511423 1861.228396 1971.097856 2030.049821 2509.162467 1930.757957 1924.15926 2448.991121 1946.706053 1735.71412 0.851241231 1.072312759 1.135612042 1.16957614 1.445608144 1.112370946 1.108569227 1.410941521 1.12155915 1 10.76131363 -6.755189522 1.770474709 0.930744141 1.242573234 0.414883309 0.127373214 0.175398038 1.122287758 0.019913757 0.028897695 1.76E-07 6.755189522 0.311829094 (ac)ATAAETS(ph)ASEPEAESK ddPTM_HeLa_CUDC101_4h_R1 1 ATAAETSASEPEAESK 16 0 A0A499FI31;Q15020-4;Q15020;A0A494C0L2;F8W667;Q15020-3;Q15020-2 A0A499FI31 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 1 0 ATAAET(0.129)S(0.817)AS(0.053)EPEAESK 104.41 0.00015356 13120000 3029.4 2602.6 2172.7 2253.3 2454.1 2420.4 2443.2 1903.5 2854.9 2512.1 TRUE FALSE FALSE 2674.298324 2682.783021 2290.162734 2345.199314 2273.065932 2374.234903 2537.435042 2120.186746 2737.219814 2497.157917 1.070936806 1.074334547 0.917107692 0.939147379 0.910261188 0.950774833 1.016129186 0.849039915 1.096134047 1 11.28607134 -6.754860789 24.99980837 1.037496655 0.934713316 0.630347253 0.04740633 90.78050906 344980.5607 0.007328171 0.010226164 1.76E-07 6.754860789 -0.102783339 TNT(ph)PQGVLPSSQLK ddPTM_HeLa_CUDC101_4h_R1 1 TNTPQGVLPSSQLK 14 0 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 TNT(1)PQGVLPSSQLK 215.15 1.84E-23 19828000 2775.7 2105.9 1816 1860.3 1848.7 2009.5 2041.8 1558.1 1852.8 1851.2 TRUE FALSE FALSE 2450.336654 2170.780283 1914.178453 1936.171075 1712.325084 1971.172136 2120.55291 1735.467806 1776.4268 1840.18898 1.331567942 1.179650735 1.040207541 1.052158825 0.930515889 1.071179187 1.152356053 0.943092163 0.9653502 1 10.84563822 -6.754719404 22.4934571 1.162679385 1.035215323 0.076849157 0.113574103 62.37430918 208778.4345 0.021445974 0.029880108 1.76E-07 6.754719404 -0.127464062 VSPT(ph)PEPS(ph)PPATEK ddPTM_HeLa_CUDC101_4h_R1 1 VSPTPEPSPPATEK 14 0 Q5JTC6;Q5JTC6-2 Q5JTC6 AMER1 APC membrane recruitment protein 1 2 0 VS(0.047)PT(0.953)PEPS(1)PPATEK 122.16 0.00019391 0 4107.9 3766.3 2971.8 2960 3130.6 3625.6 3578.9 2932.9 3466.7 3672 TRUE FALSE FALSE 3626.378189 3882.335239 3132.464497 3080.721594 2899.661875 3556.447721 3716.939372 3266.769481 3323.801159 3650.158781 0.993485053 1.063607222 0.858172119 0.843996598 0.794393354 0.974326854 1.018295256 0.894966405 0.910590842 1 11.83374351 -6.754334291 24.99975336 1.001838816 0.899248354 0.305800446 0.069120608 138.7867914 488329.1757 0.010592378 0.014795327 1.76E-07 6.754334291 -0.102590462 GHYEVTGSDDET(ph)GKLQGSGVSLASK ddPTM_HeLa_CUDC101_4h_R1 1 GHYEVTGSDDETGKLQGSGVSLASK 25 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHY(0.011)EVT(0.128)GS(0.128)DDET(0.731)GKLQGS(0.002)GVSLASK 80.683 6.34E-05 320360000 3134.4 2484.2 2212.8 2121.3 2582.3 2553.6 2155.7 2112.2 2653.4 2291.9 TRUE FALSE FALSE 2766.990383 2560.735257 2332.430661 2207.815783 2391.808874 2504.894335 2238.846071 2352.64431 2544.025729 2278.267677 1.214515051 1.123983491 1.023773758 0.969076551 1.049836636 1.099473236 0.982696675 1.032646135 1.116649178 1 11.15372155 -6.754316515 24.56707861 1.105830536 1.026072352 0.343978682 0.058813181 187.4966986 646681.214 0.0136979 0.01913432 1.76E-07 6.754316515 -0.079758184 EQSSDLTPSGDVS(ph)PVKPLSR ddPTM_HeLa_CUDC101_4h_R1 2 EQSSDLTPSGDVSPVKPLSR 20 1 Q8WYQ5-3;Q8WYQ5 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 1 0 EQSSDLTPSGDVS(1)PVKPLSR;EQSSDLTPSGDVS(1)PVKPLSR ; 160.21 4.14E-06 468640000 6062.3 5190.4 4076.6 4460.6 4831.1 4333.9 3970.5 3781.1 4636.2 4926.6 TRUE FALSE FALSE 5351.686384 5350.310072 4296.993327 4642.522548 4474.719378 4251.238078 4123.643515 4211.52514 4445.093874 4897.296364 1.092783852 1.092502817 0.877421542 0.947976639 0.913712188 0.868078581 0.842024499 0.859969425 0.907662829 1 12.25776979 -6.753851543 24.9967721 1.048690446 0.886333637 0.562296148 0.058089417 66.53793218 219196.5287 0.007657748 0.010711311 1.76E-07 6.753851543 -0.162356809 S(ph)PQQTVPYVVPLSPK ddPTM_HeLa_CUDC101_4h_R1 1 SPQQTVPYVVPLSPK 15 0 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 0 S(0.498)PQQT(0.321)VPY(0.045)VVPLS(0.136)PK 122.5 0.0008702 17612000 2537.5 2372 1876 1867.6 2559.9 2272 2041.6 1823.4 1842.2 2281 TRUE FALSE FALSE 2240.058097 2445.078508 1977.422235 1943.7688 2371.061277 2228.665385 2120.345196 2030.968486 1766.263736 2267.432511 0.987927132 1.078346763 0.872097505 0.857255416 1.045703132 0.982902633 0.935130455 0.895712872 0.778970809 1 11.14684389 -6.753676527 24.99999863 1.000443218 0.935790816 0 0.090226063 202.9430894 653568.93 0.009161854 0.01281752 1.76E-07 6.753676527 -0.064652401 LHSFLGDDVFLR ddPTM_HeLa_CUDC101_4h_R1 2 LHSFLGDDVFLR 12 0 E9PK47;P06737-2;P06737 E9PK47 PYGL "Alpha-1,4 glucan phosphorylase;Glycogen phosphorylase, liver form" 0 0 ; ; 177.04 3.10E-07 19577200 3920.3 3585.1 3512.7 3428 4089.9 3623.2 3010.4 3257 3281 3333.6 FALSE FALSE TRUE 3460.768377 3695.552682 3702.607187 3567.808657 3788.196225 3554.093497 3126.512136 3627.763715 3145.755791 3313.771599 1.044359357 1.11521044 1.117339284 1.076661004 1.14316757 1.072522167 0.943490534 1.094753699 0.94929771 1 11.69425845 -7.922370434 1.38925932 1.011742937 1.077601146 0.316952306 0.055059401 0.408836407 1.64139396 0.01248052 0.011058856 1.20E-08 7.922370434 0.06585821 GGGTSSGGSSTNS(ph)LTGSRPPK ddPTM_HeLa_CUDC101_4h_R1 2 GGGTSSGGSSTNSLTGSRPPK 21 1 Q5T9C2-3;Q5T9C2-2;Q5T9C2 Q5T9C2-3 FAM102A Protein FAM102A 1 0 GGGTSSGGSSTNS(0.997)LT(0.003)GSRPPK;GGGTSSGGSS(0.001)T(0.004)NS(0.988)LT(0.008)GSRPPK ; 126.32 3.48E-07 24598000 2560 1879.67 2428.5 2383.3 2954.3 2128 2270.6 2191.7 2003.41 2044.48 TRUE FALSE FALSE 2259.920681 1937.580405 2559.792056 2480.501276 2736.367175 2087.411945 2358.177803 2441.194269 1920.828592 2032.319342 1.111990933 0.953383833 1.25954224 1.220527318 1.34642579 1.027108241 1.160338217 1.201186358 0.945141126 1 10.9889114 -6.753600905 24.99938567 1.046899706 1.199990188 0.516454469 0.09077996 132.6718542 423130.9476 0.014057323 0.019674608 1.76E-07 6.753600905 0.153090482 LHTDDDLNWLDHSR ddPTM_HeLa_CUDC101_4h_R1 2 LHTDDDLNWLDHSR 14 0 Q9Y4G6 Q9Y4G6 TLN2 Talin-2 0 0 ; ; 234.52 1.63E-43 18002600 2358.7 2396.7 2581.8 2121.9 2541 2488.3 2470.9 2588.3 2755.4 2641.5 FALSE FALSE TRUE 2082.216762 2470.539486 2721.379918 2208.440254 2353.555492 2440.839823 2566.203441 2882.94161 2641.821246 2625.788241 0.792987313 0.940875371 1.036404945 0.841058018 0.896323419 0.929564611 0.977307843 1.097933781 1.006105978 1 11.35853486 -4.274085574 1.621642577 0.908536216 1.164485016 0.292706583 0.073130292 0.958530557 2.405005013 0.012545032 0.381750604 5.32E-05 4.274085574 0.2559488 LHTDDELNWLDHGR ddPTM_HeLa_CUDC101_4h_R1 3 LHTDDELNWLDHGR 14 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 0 ;; ;; 192.65 3.53E-12 328262000 6332.5 5566.7 5379.4 5634.2 7210.1 5891.1 5830.5 5253.6 6558.9 6628.4 FALSE FALSE TRUE 5590.213949 5738.203429 5670.226636 5863.987029 6678.225288 5778.737083 6055.384338 5851.648588 6288.539366 6588.973982 0.848419491 0.870879661 0.860562912 0.889969674 1.013545554 0.877031401 0.919017795 0.888097085 0.95440343 1 12.68583811 -9.472083255 1.223953827 0.99971896 0.892737183 0.3220815 0.045516924 0.357844436 0.963007584 0.031829074 0.007911971 3.37E-10 9.472083255 -0.106981777 LHVAILER ddPTM_HeLa_CUDC101_4h_R1 2 LHVAILER 8 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 107.01 0.0039346 9988100 5337.5 3894 2453.8 3805.9 3790.6 3799.2 2848.3 2786.3 2423.9 1439.84 FALSE FALSE TRUE 4711.846341 4013.969524 2586.45985 3961.121053 3510.97499 3726.73659 2958.159885 3103.481129 2323.985816 1431.275768 3.292060445 2.804469701 1.807100986 2.767545669 2.453038799 2.603786548 2.066799391 2.168332057 1.623716316 1 10.48308595 -9.506637278 1.261924635 1.001729005 2.57118188 0.51770947 0.440206049 0.239928325 0.685071013 0.322111883 0.078244391 3.11E-10 9.506637278 1.569452874 LTQTSS(ph)TEQLNVLETETEVLNK ddPTM_HeLa_CUDC101_4h_R1 2 LTQTSSTEQLNVLETETEVLNK 22 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 LT(0.006)QT(0.065)S(0.189)S(0.551)T(0.189)EQLNVLETETEVLNK;LT(0.001)QT(0.059)S(0.183)S(0.575)T(0.183)EQLNVLETETEVLNK ; 209.29 2.03E-26 89648000 16711.4 14489.5 13038.8 12765.2 15027 14971.7 13698.2 10968.9 16777.6 14726 TRUE FALSE FALSE 14752.51502 14935.90432 13743.71697 13285.82003 13918.48815 14686.13977 14226.54416 12217.55524 16086.02023 14638.4091 1.007794968 1.02032292 0.938880508 0.907599996 0.950819727 1.003260646 0.971864092 0.834623159 1.098891288 1 13.83747115 -6.753159309 24.73289634 1.005031955 0.93884948 0.428607939 0.051281626 128.1994465 382935.2478 0.006447176 0.009031749 1.77E-07 6.753159309 -0.066182475 VLGTS(ph)PEAIDSAENR ddPTM_HeLa_CUDC101_4h_R1 3 VLGTSPEAIDSAENR 15 0 P27708;F8VPD4 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 VLGT(0.176)S(0.824)PEAIDSAENR;VLGT(0.171)S(0.829)PEAIDSAENR;VLGT(0.144)S(0.856)PEAIDSAENR ;; 196.37 3.10E-16 12661800 8029.2 7039.1 5720.2 6422.5 6967.7 6971.3 5915.8 5759.5 6279.2 6413.5 TRUE FALSE FALSE 7088.029347 7255.966328 6029.451315 6684.43731 6453.706653 6838.334067 6143.974388 6415.138199 6020.368718 6375.352217 1.111786315 1.138127915 0.945744033 1.048481258 1.012290213 1.072620592 0.963707444 1.006240594 0.94431939 1 12.63828933 -6.752780535 24.99997482 1.060663437 1.011106922 0.080218019 0.061282275 287.6313847 830453.4312 0.00930175 0.013032792 1.77E-07 6.752780535 -0.049556516 PSQLS(ph)TPAAS(ph)PSASEPR ddPTM_HeLa_CUDC101_4h_R1 1 PSQLSTPAASPSASEPR 17 0 K7EL01;Q5XUX1;Q5XUX1-2 K7EL01 FBXW9 F-box/WD repeat-containing protein 9 2 0 PS(0.029)QLS(0.551)T(0.424)PAAS(0.683)PS(0.3)AS(0.012)EPR 105.92 0.014003 8589600 2782 2687.5 1946.4 1876.3 2064.6 2053.9 2118.7 1738.5 2232.7 2836.1 TRUE FALSE FALSE 2455.898177 2770.29869 2051.628272 1952.823624 1912.298571 2014.72528 2200.418969 1936.403813 2140.667161 2819.230751 0.871123506 0.982643471 0.727726267 0.692679598 0.678305091 0.714636529 0.780503323 0.686855381 0.759308957 1 11.46108585 -6.752237859 23.65808789 0.940703838 0.714010957 0.617471344 0.070779653 31.73180389 81585.18915 0.008699906 0.012194768 1.77E-07 6.752237859 -0.226692881 LHYDILEDR ddPTM_HeLa_CUDC101_4h_R1 1 LHYDILEDR 9 0 Q8NEM2 Q8NEM2 SHCBP1 SHC SH2 domain-binding protein 1 0 0 104.42 0.012571 2564700 1130.6 952.17 871.69 936.55 894.92 893.97 857.94 680.94 1065.9 1337 FALSE FALSE TRUE 998.0727819 981.5052291 918.8161981 974.7465571 828.9035345 876.9190117 891.0310332 758.4554571 1021.963151 1329.047465 0.750968501 0.738502766 0.691334375 0.733417416 0.623682417 0.659810154 0.670428301 0.570675975 0.768944058 1 10.37617691 -12.95987836 0.129279127 2.005771143 0.519315496 0.471931869 0.079851696 9.046007074 0.095656417 2.393610103 0.10707908 1.10E-13 12.95987836 -1.486455648 LIAMK(ac)TEK ddPTM_HeLa_CUDC101_4h_R1 2 LIAMKTEK 8 1 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 0 1 ; LIAMK(1)TEK;LIAMK(1)TEK 132.76 0.0015099 3061500 7321.6 3727.5 2213.3 3897 3020.9 3291.6 3105.5 2551.7 2555.9 1848.7 FALSE TRUE FALSE 6463.373147 3842.339857 2332.957693 4055.936504 2798.054225 3228.818214 3225.280175 2842.175214 2450.54472 1837.70385 3.517091802 2.090837355 1.269496003 2.207067534 1.522581685 1.756985063 1.755059813 1.546590444 1.333481845 1 10.84368858 -6.978884378 22.66268354 2.22101287 1.698973247 0.004674521 0.667971589 191.8913952 205948.0053 0.15325517 0.201397331 1.05E-07 6.978884378 -0.522039623 LIAPVAEEEATVPNNK ddPTM_HeLa_CUDC101_4h_R1 1 LIAPVAEEEATVPNNK 16 0 A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50;F5H793;C9J7H8 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase 0 0 172.17 3.34E-06 5630800 2774.2 2733 2401.1 2945.3 2717 2901.4 2739.2 2795.3 3382.2 3153.6 FALSE FALSE TRUE 2449.012481 2817.200491 2530.910729 3065.422065 2516.572323 2846.060629 2844.851862 3113.505653 3242.784284 3134.842247 0.781223516 0.898673767 0.807348673 0.977855287 0.802774789 0.907880016 0.907494425 0.993193726 1.034433005 1 11.61417713 -4.197263552 2.102656202 0.888135459 1.033626113 0.08372376 0.082262325 1.550679691 6.510316916 0.012432496 0.45103835 6.35E-05 4.197263552 0.145490654 S(ph)LPVFSIQDSPFGDAPLGRS(ph)HY(ph)WPSQSQTWCPK ddPTM_HeLa_CUDC101_4h_R1 1 SLPVFSIQDSPFGDAPLGRSHYWPSQSQTWCPK 33 1 C9JFW7;Q2NL68-3;Q2NL68-4;Q2NL68-2;Q2NL68 C9JFW7 PROSER3 Proline and serine-rich protein 3 3 0 S(0.756)LPVFS(0.158)IQDS(0.147)PFGDAPLGRS(0.902)HY(0.797)WPS(0.161)QS(0.039)QT(0.039)WCPK 42.355 0.028828 22628000 2237.5 1872.5 2069.6 2099.1 2118.6 1971.3 2078.8 2022.2 2260.5 2106.5 TRUE FALSE FALSE 1975.223642 1930.189506 2181.488836 2184.710371 1962.315099 1933.700737 2158.980012 2252.399074 2167.321233 2093.970444 0.94329108 0.921784503 1.041795428 1.04333391 0.937126455 0.923461333 1.031046077 1.075659439 1.035029524 1 11.03202536 -6.752214478 24.99018029 0.968614822 1.004192523 0.080075549 0.052934264 376.3400451 1019497.858 0.00845727 0.011865453 1.77E-07 6.752214478 0.0355777 AQT(ph)PPGPSLSGSK ddPTM_HeLa_CUDC101_4h_R1 1 AQTPPGPSLSGSK 13 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQT(0.968)PPGPS(0.03)LS(0.002)GSK 110.51 0.021756 184010000 3580.4 2991.8 2515.3 2454.4 2919.5 2561.8 2489.9 2567 2965 2862.6 TRUE FALSE FALSE 3160.71094 3083.973812 2651.284726 2554.501041 2704.134301 2512.937933 2585.936277 2859.216904 2842.781445 2845.573128 1.110746692 1.083779497 0.931722577 0.897710558 0.950295136 0.883104324 0.908757625 1.004794737 0.999018938 1 11.47450354 -6.752061732 24.38246849 1.056119473 0.925864624 0.628096877 0.044647454 74.79057569 194459.0842 0.008152495 0.01143717 1.77E-07 6.752061732 -0.130254849 LIEDK(ac)PR ddPTM_HeLa_CUDC101_4h_R1 2 LIEDKPR 7 1 Q13247-3;Q13247;A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80 Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 0 1 ; LIEDK(1)PR;LIEDK(1)PR 94.302 0.026648 5241900 8738.9 3313.7 4156.7 3499.5 7580.8 6201.4 7167.4 4986.1 7119.6 5801.6 FALSE TRUE FALSE 7714.539389 3415.791169 4381.423775 3642.224736 7021.579487 6083.118627 7443.849019 5553.697469 6826.127075 5767.091825 1.337682774 0.592290061 0.759728457 0.631553103 1.217525176 1.054798296 1.290745708 0.962997926 1.183634192 1 12.49362828 LIEDTEDWRPR ddPTM_HeLa_CUDC101_4h_R1 3 LIEDTEDWRPR 11 1 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4;Q96HC4-6;H0YBI4;Q96HC4-3;Q96HC4-2 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 0 0 ;; ;; 224.75 2.16E-32 128290000 10288.6 9710.1 9787 8976.6 10723.1 8973.5 9725.7 10244.5 9617.5 9851 FALSE FALSE TRUE 9082.585905 10009.25667 10316.11482 9342.704548 9932.078276 8802.345438 10100.82351 11410.69247 9221.062579 9792.405814 0.927513226 1.022144799 1.053481138 0.954076529 1.014263345 0.898895083 1.0314956 1.165259354 0.941654457 1 13.25744763 -4.346501555 3.381543314 0.974207296 1.174650407 0.609254721 0.045438382 0.13424915 2.479256968 0.006511744 0.059712144 4.50E-05 4.346501555 0.20044311 LIEEDFPGIGDK ddPTM_HeLa_CUDC101_4h_R1 2 LIEEDFPGIGDK 12 0 G5E971;P45452 G5E971 MMP13 Collagenase 3 0 0 ; ; 116.05 0.023445 79618000 5689.5 5041.7 5280.6 4880.6 5805.9 5290.8 4883.9 5186.6 5556.2 5782.8 FALSE FALSE TRUE 5022.585435 5197.028801 5566.085209 5079.651964 5377.610324 5189.886805 5072.273659 5777.021579 5327.171084 5748.403648 0.873735691 0.904082093 0.96828364 0.883663061 0.935496297 0.902839662 0.882379521 1.004978414 0.926721819 1 12.48894565 -9.504175367 1.253097975 0.999995338 0.913145741 0.031757681 0.045077748 0.359322496 1.009950337 0.026598247 0.006440255 3.13E-10 9.504175367 -0.086849597 LIEEVMIGEDK ddPTM_HeLa_CUDC101_4h_R1 2 LIEEVMIGEDK 11 0 F5GWF6;P78371-2;P78371;F8VQ14 F5GWF6 CCT2 T-complex protein 1 subunit beta 0 0 ; ; 207.34 1.36E-22 11403600 5962.4 4846.3 4922.1 4607.5 4837.4 4917.3 4176.7 4409.5 5311.8 5245.2 FALSE FALSE TRUE 5263.49651 4995.608759 5188.203615 4795.413765 4480.554639 4823.510695 4337.796718 4911.459656 5092.845356 5214.001317 1.009492747 0.958114211 0.995052226 0.919718557 0.859331321 0.925107303 0.831951596 0.941975147 0.976763343 1 12.34817523 -6.18716903 2.590926488 1.000599514 0.887409604 0.660480728 0.032924381 0.099518866 1.3081567 0.004488731 0.007813243 6.50E-07 6.18716903 -0.11318991 LIELQAGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LIELQAGKK 9 1 K7ELL7;P14314-2;P14314;K7EPW7 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 1 ; LIELQAGK(1)K;LIELQAGK(1)K 142.92 0.0015786 1569810 2060.1 692.62 898.01 837.17 1786.48 1915.98 2026.39 1321.26 1808.05 1030.74 FALSE TRUE FALSE 1818.618201 713.9588012 946.5591369 871.3134112 1654.69493 1879.435874 2104.548541 1471.666898 1733.521414 1024.609113 1.774938538 0.696810903 0.923824632 0.850386162 1.614952384 1.834295489 2.05400139 1.436320329 1.69188561 1 10.00085791 -5.536768235 23.10353926 1.248958531 1.789758508 0.371935862 0.36069171 94.85414904 157778.2757 0.060562436 0.121194076 2.91E-06 5.536768235 0.540799977 VLEQLTGQTPVFS(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 VLEQLTGQTPVFSK 14 0 P62913;Q5VVC8;P62913-2 P62913 RPL11 60S ribosomal protein L11 1 0 VLEQLTGQTPVFS(1)K;VLEQLTGQT(0.001)PVFS(0.999)K ; 205.98 1.49E-23 69990000 8356.9 7555.8 6110 6338.1 7131.1 7193.4 6703.7 6279.5 5807.8 7210.2 TRUE FALSE FALSE 7377.31685 7788.585242 6440.325082 6596.595114 6605.05296 7056.19788 6962.263955 6994.332897 5568.400026 7167.31341 1.029300162 1.086681271 0.898568922 0.920372075 0.921552133 0.984496907 0.97139103 0.975865362 0.776915939 1 12.80721673 -6.752031853 24.99999733 1.01968617 0.94611598 0 0.083922301 127.177798 337967.2333 0.005757189 0.008080832 1.77E-07 6.752031853 -0.07357019 MAGNEALS(ph)PTSPFR ddPTM_HeLa_CUDC101_4h_R1 1 MAGNEALSPTSPFR 14 0 Q86WR7;Q86WR7-2;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 0 MAGNEALS(0.884)PT(0.113)S(0.003)PFR 121.95 0.0013448 14363000 1398.5 1137.8 1354.5 1437.8 1537.2 1449.5 1370.8 1264 1325 1225.7 TRUE FALSE FALSE 1234.56995 1172.854269 1427.728367 1496.439699 1423.803819 1421.853203 1423.672215 1407.888651 1270.382939 1218.409482 1.013263577 0.962610918 1.171796829 1.228191114 1.168575786 1.166974834 1.168467774 1.155513538 1.042656806 1 10.25078336 -6.75195337 24.99955496 1.003164429 1.177762267 0.913981646 0.025839999 33.31453077 87797.30658 0.003570694 0.005011882 1.77E-07 6.75195337 0.174597838 LIEVDDER ddPTM_HeLa_CUDC101_4h_R1 2 LIEVDDER 8 0 P62753;A2A3R7 P62753 RPS6 40S ribosomal protein S6 0 0 ; ; 166.68 0.0012429 190203000 11048.1 9640.6 10390.7 9329.7 10898.9 10671.1 10021.1 10869.8 10650.4 9218.3 FALSE FALSE TRUE 9753.058466 9937.615459 10952.45267 9710.205492 10094.90986 10467.56655 10407.61718 12107.17409 10211.386 9163.469142 1.064341279 1.084481795 1.19522994 1.059664778 1.101647171 1.142314814 1.135772601 1.321243506 1.114358094 1 13.16167817 -1 0.181708541 0.994178376 2.072391684 0.470906222 0.060699824 24.53564139 0.267798044 0.063297692 7.36959217 0.1 1 1.078213308 LIEVDDERK ddPTM_HeLa_CUDC101_4h_R1 1 LIEVDDERK 9 1 P62753;A2A3R7 P62753 RPS6 40S ribosomal protein S6 0 0 84.615 0.03792 5461800 2182.8 1755.2 1903.7 2003.1 2222.2 2233.7 1916.7 2107.4 1914 2198.2 FALSE FALSE TRUE 1926.935493 1809.275632 2006.61978 2084.795076 2058.272733 2191.095894 1990.627761 2347.297898 1835.10411 2185.125009 0.881842222 0.827996396 0.918308917 0.954085038 0.94194736 1.002732514 0.910990334 1.074216756 0.839816533 1 11.0935001 -2.240267501 1.694682574 0.935721053 133.3717935 0.347389019 0.058698926 1451.702205 5.44907725 0.008767786 746602.3389 0.005750856 2.240267501 132.4360725 LIFAK(ac)PINSK ddPTM_HeLa_CUDC101_4h_R1 2 LIFAKPINSK 10 1 Q6MZP7;Q6MZP7-3;D6REW4 Q6MZP7 LIN54 Protein lin-54 homolog 0 1 ; LIFAK(1)PINSK;LIFAK(1)PINSK 132.78 0.0016921 3024700 324.01 663.35 744.71 627.73 778.02 697.76 579.67 677.08 141.77 0 FALSE TRUE FALSE 286.030039 683.7870272 784.9712752 653.3315427 720.6270146 684.4513905 602.0280661 754.1560503 135.9261806 0 0 LIFSTITSK ddPTM_HeLa_CUDC101_4h_R1 1 LIFSTITSK 9 0 P43686;P43686-2 P43686 PSMC4 26S protease regulatory subunit 6B 0 0 122.52 0.018767 391030 0 154.75 58.987 0 0 151.07 178.4 122.73 0 121.79 FALSE FALSE TRUE 0 159.5176641 62.17601565 0 0 148.1885914 185.2809478 136.7010871 0 121.0655877 0 1.317613594 0.513572988 0 0 1.224035618 1.530417944 1.129148999 0 1 6.919645034 -5.122274755 6.873449088 0.506941549 1.340220214 0.442480751 0.448404004 0.206512192 10.71048451 0.070449765 0.181752469 7.55E-06 5.122274755 0.833278664 S(ph)GKDSEAWVPDSEER ddPTM_HeLa_CUDC101_4h_R1 2 SGKDSEAWVPDSEER 15 1 Q96F63;M0QXS4 Q96F63 CCDC97 Coiled-coil domain-containing protein 97 1 0 S(0.966)GKDS(0.034)EAWVPDSEER;S(0.954)GKDS(0.046)EAWVPDSEER ; 95.954 0.0042616 14309400 4224.6 3525.1 2894.8 3175.9 2928.7 3146.5 2801 2802.7 3817.8 3343 TRUE FALSE FALSE 3729.398792 3633.704153 3051.301644 3305.426929 2712.655636 3086.485755 2909.035508 3121.748039 3660.428668 3323.115687 1.122259693 1.093463031 0.918205062 0.994677056 0.816298887 0.928792749 0.875393992 0.939403961 1.101505037 1 11.6983208 -6.751932745 24.09452312 1.062026589 0.910612578 0.698425099 0.053330565 67.223585 170376.8477 0.009743622 0.013667787 1.77E-07 6.751932745 -0.151414011 VAVEYLDPS(ph)PEVQK ddPTM_HeLa_CUDC101_4h_R1 2 VAVEYLDPSPEVQK 14 0 J3QT28;O43684-2;O43684 J3QT28 BUB3 Mitotic checkpoint protein BUB3 1 0 VAVEYLDPS(1)PEVQK;VAVEYLDPS(1)PEVQK ; 113.59 0.0027067 26466000 10253.8 9348.9 7578.6 7907.3 8379.1 8275.5 8078.9 8379.2 9000.6 9166.7 TRUE FALSE FALSE 9051.865108 9636.928528 7988.32204 8229.793872 7760.990487 8117.658625 8390.505879 9333.054258 8629.591458 9112.176061 0.993381279 1.057588052 0.876664584 0.903164493 0.851716476 0.890858404 0.920801554 1.024239896 0.947039588 1 13.15357991 -6.751841621 24.99978737 1.001340681 0.90767623 0.433314072 0.049328811 126.5570512 329648.6295 0.007228459 0.010147701 1.77E-07 6.751841621 -0.093664451 LIHPDEDISLEER ddPTM_HeLa_CUDC101_4h_R1 4 LIHPDEDISLEER 13 0 J3KS31;J3QRS9;X6R4W8;O43670-3;O43670-2;O43670;O43670-4 J3KS31 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 0 0 ;;; ;;; 246.51 1.00E-55 80637000 19990.1 17068.5 16608.6 16486.4 19137.7 18507 17042.8 16903.1 18334.8 19740.7 FALSE FALSE TRUE 17646.89078 17594.36025 17506.51115 17158.78665 17725.95 18154.00981 17700.1465 18827.28058 17579.03178 19623.28144 0.899283376 0.896606427 0.892129648 0.87440965 0.903312224 0.925126099 0.901997281 0.959435894 0.89582529 1 14.26027869 -9.153572661 0.823206429 1.002380157 0.904829795 0 0.038327304 0.272087533 0.321146892 0.016687541 0.004381615 7.02E-10 9.153572661 -0.097550362 LIHPDEDISLEERR ddPTM_HeLa_CUDC101_4h_R1 1 LIHPDEDISLEERR 14 1 J3KS31;J3QRS9;X6R4W8;O43670-3;O43670-2;O43670;O43670-4 J3KS31 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 0 0 124.38 0.0008187 6452200 978.3 1167 1181.7 1121.1 1437.7 1349 1477.1 1506.3 1428.8 934.14 FALSE FALSE TRUE 863.625157 1202.953887 1245.586276 1166.823304 1331.643735 1323.270073 1534.072242 1677.771103 1369.904259 928.5836937 0.930045577 1.29547169 1.341382888 1.256562345 1.434058927 1.425041255 1.652055977 1.806806554 1.475262024 1 9.858888137 -5.155867338 0.371991541 0.938779517 2.05684385 0.432275699 0.190254409 0.814748377 0.123909571 0.03833791 0.370245552 6.98E-06 5.155867338 1.118064334 LIHTLDDR ddPTM_HeLa_CUDC101_4h_R1 2 LIHTLDDR 8 0 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;H7C3A1 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 0 0 ; ; 162.25 0.00072101 23666000 6656.6 5498.3 5502.8 5852 6372.8 5574.6 6028.5 5747.8 5424.9 5056.2 FALSE FALSE TRUE 5876.323439 5667.696106 5800.298013 6090.669855 5902.69124 5468.273793 6261.021264 6402.106319 5201.283326 5026.125498 1.169155733 1.127647153 1.154029683 1.211802184 1.174401881 1.087970007 1.245695371 1.273765711 1.034849474 1 12.29523098 -13.52287874 0.160896157 0.286540326 1.235515287 0.680407817 0.047074262 26.01791411 0.278807936 5.825300662 0.091142455 3.00E-14 13.52287874 0.948974961 S(ph)GTFDLLEMDR ddPTM_HeLa_CUDC101_4h_R1 1 SGTFDLLEMDR 11 0 H0YA31;H0YA26;E9PHT6;Q9NVE7 H0YA31 PANK4 Pantothenate kinase 4 1 0 S(0.999)GT(0.001)FDLLEMDR 118.76 0.00041333 0 405.53 400.75 292.12 314.87 322.39 267.55 500.66 202.91 462.47 393.81 TRUE FALSE FALSE 357.9943881 413.0966325 307.9128908 327.7117596 298.607932 262.4469295 519.9706239 226.0084542 443.4067909 391.4676006 0.91449302 1.055251142 0.786560345 0.837136353 0.762790922 0.670418009 1.328259665 0.577336295 1.132678133 1 8.612749099 -6.751207268 24.97835637 0.965665697 0.840277716 0.170661904 0.196146056 369.3059869 901537.0757 0.027552559 0.038716558 1.77E-07 6.751207268 -0.125387981 AASDPLLSSVS(ph)PAVSK ddPTM_HeLa_CUDC101_4h_R1 1 AASDPLLSSVSPAVSK 16 0 P19532 P19532 TFE3 Transcription factor E3 1 0 AASDPLLS(0.042)S(0.465)VS(0.493)PAVSK 257.72 8.98E-70 75506000 4857.5 4391.7 3551.5 3520.2 4467.3 3619.4 4025.9 2745 4433.9 4401 TRUE FALSE FALSE 4288.111213 4527.003072 3743.504833 3663.768972 4137.756179 3550.365975 4181.180312 3057.479704 4251.132765 4374.822656 0.980179438 1.034785505 0.855692934 0.837466855 0.94581118 0.811545119 0.955737098 0.698880833 0.971726879 1 12.09500882 -6.751122962 24.97767594 0.99368966 0.857543716 0.516302831 0.068936898 118.9065218 287890.5358 0.009585997 0.013470214 1.77E-07 6.751122962 -0.136145943 S(ph)ASPDDDLGSSNWEAADLGNEER ddPTM_HeLa_CUDC101_4h_R1 1 SASPDDDLGSSNWEAADLGNEER 23 0 E9PM92;O00193;E9PQA1 E9PM92 C11orf58;SMAP Small acidic protein 1 0 S(0.5)AS(0.5)PDDDLGSSNWEAADLGNEER 134.07 1.06E-07 26944000 1611.1 1550.6 1185.6 1172 1331.9 1277.9 1262.1 1376.6 1379 1560.8 TRUE FALSE FALSE 1422.2493 1598.372148 1249.697122 1219.799226 1233.648391 1253.526187 1310.77962 1533.30658 1322.157036 1551.516292 0.916683445 1.030200041 0.805468256 0.786198142 0.795124355 0.807936206 0.844837806 0.98826328 0.852170901 1 10.59946313 -6.751079499 24.99994155 0.964772555 0.832617289 0.367408136 0.070565677 131.5552073 317461.4439 0.010183836 0.014310667 1.77E-07 6.751079499 -0.132155266 EYIPGQPPLS(ph)QSSDSS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 0 EYIPGQPPLS(0.889)QS(0.093)S(0.175)DS(0.253)S(0.562)PT(0.027)R 136.81 0.00046135 123670000 3098.6 2750.3 2337.2 2398.5 2451.5 2380.9 2592.5 2311.3 2920.7 2764.7 TRUE FALSE FALSE 2735.386805 2835.033483 2463.556102 2496.321197 2270.657729 2335.488299 2692.493593 2574.409049 2800.30751 2748.255441 0.995317525 1.031575683 0.89640725 0.908329393 0.82621786 0.849807578 0.979710093 0.936743001 1.01894004 1 11.42430039 -6.750983141 24.86861742 1.000261062 0.897986818 0.633204375 0.041371781 106.5619486 253440.9857 0.006768361 0.009511861 1.77E-07 6.750983141 -0.102274244 LIILDEIHLLHDDR ddPTM_HeLa_CUDC101_4h_R1 2 LIILDEIHLLHDDR 14 0 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 ; ; 147.52 0.00023175 9826900 2738.3 1780.21 1787.18 1942.77 1825.32 2132.39 2118.34 1227.04 2042.34 1942.64 FALSE FALSE TRUE 2417.320625 1835.05616 1883.800357 2022.004558 1690.66978 2091.718214 2200.045083 1366.721274 1958.153881 1931.085091 1.251793945 0.950272035 0.975513904 1.047082062 0.875502477 1.08318283 1.139279203 0.707747825 1.014017399 1 10.91519602 -7.227884296 24.85389645 1.11890272 0.979088507 0.136792708 0.130045259 747.7723944 553867.6471 0.022908793 0.028056629 5.92E-08 7.227884296 -0.139814213 S(ph)PPVQPHTPVTISLGTAPSLQNNQPVEFNHAINYVNK ddPTM_HeLa_CUDC101_4h_R1 2 SPPVQPHTPVTISLGTAPSLQNNQPVEFNHAINYVNK 37 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 S(0.996)PPVQPHT(0.003)PVT(0.001)ISLGTAPSLQNNQPVEFNHAINYVNK;S(0.893)PPVQPHT(0.084)PVT(0.019)IS(0.002)LGT(0.002)APSLQNNQPVEFNHAINYVNK ; 85.681 7.36E-10 219870000 3023.9 2435.1 1989.84 1817.13 2477.3 2113.35 1819.73 1550.24 2396 2546.11 TRUE FALSE FALSE 2669.443026 2510.122545 2097.416769 1891.240416 2294.554514 2073.04137 1889.917596 1726.713055 2297.235866 2530.965624 1.054713268 0.991764772 0.828702195 0.747240657 0.906592524 0.819071326 0.746718003 0.68223489 0.907651943 1 11.3054722 -6.750891109 3.291587422 1.025868106 0.787425563 0.673768242 0.067194631 0.079571388 1.802582643 0.00958401 0.013397781 1.77E-07 6.750891109 -0.238442543 LILEVHQFSR ddPTM_HeLa_CUDC101_4h_R1 2 LILEVHQFSR 10 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ; ; 108.7 0.0022274 1645000 1654.38 1365.2 1194.89 1569.58 2124.3 1669.04 1916.34 1840.67 1582.8 1115.97 FALSE FALSE TRUE 1460.456084 1407.260194 1259.489368 1633.594257 1967.594621 1637.205843 1990.253876 2050.204433 1517.556314 1109.332161 1.316518294 1.268565217 1.135358202 1.472592533 1.773674911 1.475848173 1.794100943 1.848142968 1.367990912 1 10.11547569 -1.000000005 0.147725191 0.911133884 4.473049667 0.652766527 0.160471241 21.01175733 0.201717606 0.298321879 16.05144468 0.099999999 1.000000005 3.561915783 LILGLMMPPAHYDAK ddPTM_HeLa_CUDC101_4h_R1 2 LILGLMMPPAHYDAK 15 0 P08133-2;P08133;E7EMC6;E5RK69 P08133-2 ANXA6 Annexin A6;Annexin 0 0 ; ; 82.705 0.010708 1093250 270.599 245.18 134.7 0 191.19 215.59 122.74 162.78 311.1 53.353 FALSE FALSE TRUE 238.8797954 252.7337052 141.9822894 0 177.0862946 211.4779799 127.4741229 181.3102172 298.2763263 53.03565398 4.504135944 4.765354742 2.677110185 0 3.339004638 3.987468129 2.403555219 3.418647713 5.624071807 1 5.728890653 -9.560309514 1.365765831 1.012761166 3.264946383 0 1.90853467 0.465201032 1.569023617 0.94734305 0.228705477 2.75E-10 9.560309514 2.252185218 LIMGIGHR ddPTM_HeLa_CUDC101_4h_R1 1 LIMGIGHR 8 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 0 0 79.597 0.029027 1040800 1247.6 823.11 542.15 858.02 738.15 745.67 672.87 669 547.8 132.06 FALSE FALSE TRUE 1101.358219 848.4690435 571.4602689 893.0137643 683.6981451 731.4475871 698.8228213 745.1562558 525.2194521 131.2745012 8.389734555 6.463319498 4.353170368 6.802644503 5.208156486 5.571893857 5.323370606 5.676321363 4.000925139 1 7.036442904 -9.487915622 1.227016519 0.995752564 6.168633866 0.45941127 1.36470889 0.201924976 0.543284594 0.876461079 0.213126082 3.25E-10 9.487915622 5.172881302 LINRPIIVFR ddPTM_HeLa_CUDC101_4h_R1 2 LINRPIIVFR 10 1 Q16658;C9JPH9;C9JFC0;A0A0A0MSB2 Q16658 FSCN1 Fascin 0 0 ; ; 134.77 0.0040914 14246200 2393.99 2183.55 1576.76 2150.45 2093.86 2062.1 1796.14 1649 1435.32 1356.78 FALSE FALSE TRUE 2113.370121 2250.822587 1662.004415 2238.154646 1939.400119 2022.768878 1865.417721 1836.715495 1376.155502 1348.709812 1.566956881 1.668870922 1.232292076 1.659478285 1.437966938 1.49978065 1.383112738 1.361831491 1.020349589 1 10.39736426 -9.283327258 0.956358768 0.9932276 1.480879238 0.675547015 0.128638935 0.26579317 0.426547183 0.090560881 0.023170684 5.21E-10 9.283327258 0.487651638 NSAPASVS(ph)PDGTR ddPTM_HeLa_CUDC101_4h_R1 2 NSAPASVSPDGTR 13 0 A0A590UJM5;C9J637;A0A590UJ51;H0Y7H7;H0Y599;Q8N1I0-2;Q8N1I0;Q8N1I0-3 A0A590UJM5 DOCK4 Dedicator of cytokinesis protein 4 1 0 NSAPAS(0.009)VS(0.75)PDGT(0.241)R;NSAPAS(0.001)VS(0.961)PDGT(0.038)R ; 168.55 5.67E-07 34226000 5734.8 4803.6 4187.6 4142.9 4934.4 4612.6 4507.4 4133.2 4615.4 4495.3 TRUE FALSE FALSE 5062.575437 4951.593222 4413.994323 4311.865369 4570.399143 4524.62234 4681.251928 4603.706781 4425.151258 4468.561756 1.132931738 1.108095511 0.987788592 0.964933597 1.022789746 1.012545554 1.047597009 1.030243517 0.990285354 1 12.12559485 -6.750842272 24.9992604 1.067926447 1.011161815 0.187938926 0.04581867 271.8673318 641350.1927 0.008921985 0.012543292 1.77E-07 6.750842272 -0.056764632 ADS(ph)PLEQPEGSPLTQDDR ddPTM_HeLa_CUDC101_4h_R1 2 ADSPLEQPEGSPLTQDDR 18 0 P09603-3;P09603-2;P09603 P09603-3 CSF1 Macrophage colony-stimulating factor 1;Processed macrophage colony-stimulating factor 1 1 0 ADS(1)PLEQPEGSPLTQDDR;ADS(1)PLEQPEGSPLTQDDR ; 235.75 8.45E-44 5864700 1293.71 1162.9 855.28 1016.9 721.77 983.83 902.47 754.49 1102.9 1120.26 TRUE FALSE FALSE 1142.063275 1198.727571 901.5190239 1058.373577 668.5264651 965.0650819 937.2785702 840.3780918 1057.437995 1113.596644 1.025562785 1.076446824 0.809556161 0.950410172 0.600330891 0.866619963 0.841667919 0.754652141 0.949570027 1 10.12101105 -6.750664606 24.74129219 1.017236763 0.805851801 0.569473043 0.0889931 92.87196199 213254.0417 0.012783915 0.017971943 1.78E-07 6.750664606 -0.211384962 LIQNLDANHDGR ddPTM_HeLa_CUDC101_4h_R1 2 LIQNLDANHDGR 12 0 Q96FQ6 Q96FQ6 S100A16 Protein S100-A16 0 0 ; ; 216.84 3.29E-24 32498000 11617.3 9195.2 9167.6 9982.5 9922.9 9189.1 8739.1 9598.9 9358.7 8641.9 FALSE FALSE TRUE 10255.5377 9478.493213 9663.228186 10389.6295 9190.907436 9013.833228 9076.170014 10691.59998 8972.930425 8590.497594 1.193823477 1.103369521 1.124874093 1.209432793 1.069892324 1.049279524 1.056536006 1.244584479 1.044518123 1 13.06852598 -9.506028271 1.247643573 0.999803754 1.133280765 0.309555205 0.064273371 0.400563276 1.11337539 0.045549858 0.010948146 3.12E-10 9.506028271 0.133477012 THTDS(ph)SEKELEPEAAEEALENGPK ddPTM_HeLa_CUDC101_4h_R1 1 THTDSSEKELEPEAAEEALENGPK 24 1 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 1 0 T(0.01)HT(0.035)DS(0.478)S(0.478)EKELEPEAAEEALENGPK 106.73 6.14E-07 12531000 1905.7 1618.9 2068.2 2014.6 2150.2 2178.3 2214.3 1721.9 1742.3 1997.6 TRUE FALSE FALSE 1682.316735 1668.77639 2180.013148 2096.764096 1991.58403 2136.752557 2299.706293 1917.914136 1670.481657 1985.718186 0.847208202 0.840389337 1.097846191 1.055922291 1.002954016 1.076060325 1.158123196 0.965854142 0.841248103 1 10.95544517 -6.750632371 24.99956777 0.919272889 1.061970026 0.595245054 0.068927133 150.3982055 347911.2087 0.012293375 0.017285105 1.78E-07 6.750632371 0.142697137 ILGQS(ph)SPEKK ddPTM_HeLa_CUDC101_4h_R1 1 ILGQSSPEKK 10 1 H7C485;P29374-3;P29374-2;P29374 H7C485 ARID4A AT-rich interactive domain-containing protein 4A 1 0 ILGQS(0.746)S(0.254)PEKK 64.827 0.04038 115530000 3518.1 3234.3 2692.5 2548.1 3735.5 2996.4 2712.4 2814.8 3110.7 3173.9 TRUE FALSE FALSE 3105.713651 3333.944949 2838.064694 2652.022532 3459.939607 2939.248662 2817.018177 3135.225454 2982.475629 3155.021502 0.984371628 1.05671069 0.899538939 0.840571936 1.096645334 0.931609709 0.892868139 0.993725543 0.945310714 1 11.62343412 -6.750421267 24.99998422 0.997220537 0.942117004 0.128554363 0.068999372 327.0681418 742112.365 0.010205083 0.014353414 1.78E-07 6.750421267 -0.055103533 MGS(ph)PAPLLPGDLLGGGSDSI ddPTM_HeLa_CUDC101_4h_R1 3 MGSPAPLLPGDLLGGGSDSI 20 0 Q9UPQ9-1;Q9UPQ9;Q9UPQ9-2 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI;MGS(1)PAPLLPGDLLGGGSDSI ;; 126.91 2.00E-05 157903000 7546.44 6823.52 5410.49 5603.73 7350.77 5895.62 6179.63 4976.6 5864.91 6377.26 TRUE FALSE FALSE 6661.857743 7033.744563 5702.997455 5832.274331 6808.518342 5783.170871 6417.980399 5543.116028 5623.155927 6339.327774 1.050877629 1.109541077 0.899621799 0.920014635 1.074012669 0.912268789 1.012407092 0.874401234 0.887027162 1 12.63011415 -6.750368031 24.99977441 1.031110518 0.95440373 0.119023129 0.076354505 217.5804114 491307.9105 0.009440942 0.013280844 1.78E-07 6.750368031 -0.076706788 S(ph)DSLLSFR ddPTM_HeLa_CUDC101_4h_R1 6 SDSLLSFR 8 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 S(0.997)DS(0.003)LLSFR;S(0.677)DS(0.323)LLSFR;S(0.999)DS(0.001)LLSFR;S(0.555)DS(0.445)LLSFR;S(0.999)DS(0.001)LLSFR;S(0.998)DS(0.002)LLSFR ;;;;; 175.93 8.15E-06 85694600 14384.58 12117.38 10534 10267.62 12362.84 11953.44 11200.21 9689.43 11212.66 11500.7 TRUE FALSE FALSE 12698.44134 12490.70212 11103.4999 10686.37792 11450.85792 11725.44805 11632.20585 10792.43555 10750.46941 11432.29332 1.110751883 1.092580619 0.971239942 0.934753651 1.001623874 1.025642687 1.017486651 0.944030672 0.94035983 1 13.48082722 -6.750313381 24.99984669 1.056781894 0.98471996 0.152211045 0.053235914 200.2531669 449962.7117 0.008139333 0.011451556 1.78E-07 6.750313381 -0.072061935 LEASYSDS(ph)PPGEEDLLVHVAEGSK ddPTM_HeLa_CUDC101_4h_R1 2 LEASYSDSPPGEEDLLVHVAEGSK 24 0 Q7Z3C6;C9JS65;C9JFV2;F2Z3I6;C9JX27;C9IYZ9;C9JKV7;C9JDK4;C9JXG2;Q7Z3C6-3 Q7Z3C6 ATG9A Autophagy-related protein 9A 1 0 LEAS(0.035)Y(0.001)S(0.089)DS(0.876)PPGEEDLLVHVAEGSK;LEAS(0.028)Y(0.006)S(0.098)DS(0.868)PPGEEDLLVHVAEGSK ; 85.157 4.30E-05 44362000 3786.1 3281.1 2744.4 2849.3 2989.5 3662.3 2813.2 2075.76 3085.6 3138.8 TRUE FALSE FALSE 3342.299097 3382.186802 2892.770565 2965.50677 2768.970541 3592.447729 2921.706066 2312.056128 2958.410262 3120.130278 1.071204982 1.083988969 0.92713134 0.950443253 0.887453502 1.151377478 0.936405152 0.741012689 0.948168826 1 11.60739055 -6.749724876 24.99134806 1.038341415 0.941234061 0.165637908 0.100106493 282.011792 601633.2289 0.015169191 0.021351795 1.78E-07 6.749724876 -0.097107355 GLVAAYSGES(ph)DS(ph)EEEQER ddPTM_HeLa_CUDC101_4h_R1 2 GLVAAYSGESDSEEEQER 18 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 2 0 GLVAAYS(0.003)GES(0.997)DS(1)EEEQER;GLVAAY(0.005)S(0.132)GES(0.868)DS(0.995)EEEQER ; 188 2.22E-10 34675000 5888.2 5626 4448.3 4293.2 4940.9 5247.8 4876.4 4455.5 5602.5 5680.1 TRUE FALSE FALSE 5197.994122 5799.330392 4688.788553 4468.295253 4576.419651 5147.706958 5064.484381 4962.69611 5371.562579 5646.314513 0.920599465 1.027100134 0.830415759 0.791364924 0.810514476 0.911693273 0.896953999 0.878926617 0.951339598 1 12.46309378 -6.749286553 24.99862982 0.966302271 0.853187888 0.645221678 0.043939808 130.5986771 268643.5328 0.008043294 0.011326403 1.78E-07 6.749286553 -0.113114383 HCAPS(ph)PDRSPELSSSR ddPTM_HeLa_CUDC101_4h_R1 1 HCAPSPDRSPELSSSR 16 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 HCAPS(0.805)PDRS(0.183)PELS(0.003)S(0.004)S(0.004)R 56.46 0.032147 20963000 1413.2 1126.1 1292.6 1423.2 1497.1 1197.6 1308.8 1281.2 1307.5 1193.2 TRUE FALSE FALSE 1247.546838 1160.793806 1362.481866 1481.244248 1386.661916 1174.757775 1359.280854 1427.046629 1253.604297 1186.102793 1.051803305 0.978662063 1.148704711 1.248832948 1.169090844 0.990435047 1.146005947 1.203139085 1.056910332 1 10.21201333 -6.749126387 24.92585152 1.021711143 1.148772324 0.482506436 0.065519608 149.5437333 302728.5098 0.010659644 0.015012996 1.78E-07 6.749126387 0.127061181 SPSGSAFGS(ph)QENLR ddPTM_HeLa_CUDC101_4h_R1 1 SPSGSAFGSQENLR 14 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 SPSGS(0.002)AFGS(0.998)QENLR 119 0.00031398 0 458.89 506.05 306.66 378.78 474.2 331.05 406.85 366.59 610.59 461.79 TRUE FALSE FALSE 405.0996098 521.6408007 323.2389672 394.2282856 439.2192107 324.7357728 422.5423408 408.3211238 585.4212218 459.0432525 0.882486797 1.136365251 0.704157975 0.858804227 0.956814436 0.707418682 0.920484809 0.889504685 1.275307323 1 8.842486285 -6.748782397 24.999984 0.957346469 0.843412616 0.279223367 0.141286198 254.7378088 503155.1074 0.015537765 0.021888887 1.78E-07 6.748782397 -0.113933853 LISWYDNEFGYSNR ddPTM_HeLa_CUDC101_4h_R1 5 LISWYDNEFGYSNR 14 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;;; ;;;; 241.84 1.99E-43 2552500500 8279.31 7769.74 7270.46 7060.98 8249.82 7874.43 7701.76 6778.88 7727.31 7089.65 FALSE FALSE TRUE 7308.821832 8009.11648 7663.52306 7348.957285 7641.247215 7724.238367 7998.819463 7550.560298 7408.787011 7047.480446 1.037082953 1.13645104 1.087413171 1.04277796 1.084252347 1.09602835 1.134989948 1.071384356 1.05126748 1 12.78289185 -7.478776917 4.126560845 1.015449012 1.092582414 0.495783899 0.029041562 0.108118298 3.686553424 0.005091588 0.005640433 3.32E-08 7.478776917 0.077133402 TDQEAPNASQPT(ph)PPPLPK ddPTM_HeLa_CUDC101_4h_R1 2 TDQEAPNASQPTPPPLPK 18 0 Q9H792 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 TDQEAPNASQPT(1)PPPLPK;TDQEAPNAS(0.005)QPT(0.995)PPPLPK ; 146.28 0.00032232 34100000 14276.1 12646.4 11501 11705.6 13125.4 12785.4 11269.6 10936.8 13171.3 12991.3 TRUE FALSE FALSE 12602.6772 13036.02059 12122.77885 12183.00496 12157.16539 12541.5398 11704.27225 12181.8011 12628.37344 12914.02717 0.975890559 1.009446583 0.938729545 0.943393165 0.941392273 0.971156374 0.906322412 0.943299944 0.977880352 1 13.65665135 -6.748403941 24.99945659 0.989859245 0.940688416 0.670825805 0.017184019 103.574922 198636.0967 0.002713487 0.003823986 1.78E-07 6.748403941 -0.049170829 VEET(ph)SPLGNAR ddPTM_HeLa_CUDC101_4h_R1 1 VEETSPLGNAR 11 0 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 VEET(0.867)S(0.133)PLGNAR 107.03 0.037872 26668000 3153.7 2700.3 2374.1 2464 2767.7 2785.3 2323.3 2317.6 3037.9 2583.3 TRUE FALSE FALSE 2784.028067 2783.493042 2502.451027 2564.49257 2563.532285 2732.175043 2412.910459 2581.426216 2912.676476 2567.934417 1.084150767 1.083942419 0.974499587 0.998659683 0.99828573 1.063958264 0.939630874 1.00525395 1.134248779 1 11.32639264 -6.748271954 24.99729212 1.044163529 0.997336311 0.336946561 0.046478356 279.4619276 530534.2644 0.006918306 0.009750822 1.79E-07 6.748271954 -0.046827218 LIVALMKPSR ddPTM_HeLa_CUDC101_4h_R1 1 LIVALMKPSR 10 1 P08758;D6RBL5;E9PHT9 P08758 ANXA5 Annexin A5;Annexin 0 0 118.71 0.00084022 0 318.49 126.61 181.68 0 555.22 428.69 132.65 0 220.33 193.56 FALSE FALSE TRUE 281.157085 130.510704 191.5021704 0 514.2625268 420.5134525 137.7663549 0 211.2479041 192.4086965 1.461249362 0.678299403 0.995288539 0 2.672761346 2.185522069 0.716008982 0 1.097912454 1 7.588030197 -4.522581058 24.99484413 1.243896269 0.179001881 0.233398515 0.708334582 9.79719489 822437.2392 0.097939128 0.375013941 3.00E-05 4.522581058 -1.064894389 LIVAYVDDLDRR ddPTM_HeLa_CUDC101_4h_R1 2 LIVAYVDDLDRR 12 1 O14776;O14776-2 O14776 TCERG1 Transcription elongation regulator 1 0 0 ; ; 240.37 2.51E-43 21015600 6639.8 6082.8 5973.5 5082.2 6633.8 5836.4 5544.7 5451.6 6122.3 5960.6 FALSE FALSE TRUE 5861.492709 6270.203858 6296.445479 5289.474083 6144.43779 5725.080394 5758.560936 6072.188108 5869.936203 5925.146086 0.989257079 1.058236163 1.062665019 0.892716231 1.037010346 0.966234471 0.971885056 1.024816607 0.990682106 1 12.53263501 S(ph)PEPDPYLSYR ddPTM_HeLa_CUDC101_4h_R1 2 SPEPDPYLSYR 11 0 H3BUL5;H3BVF8;H3BQG1;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 S(1)PEPDPYLSYR;S(1)PEPDPYLSYR ; 150.51 0.0006333 8503400 3100.6 2392.7 2009.1 1745.9 2136.9 2611.87 1791.15 1722.47 2023.37 2339.76 TRUE FALSE FALSE 2737.152368 2466.416251 2117.718023 1817.105348 1979.265144 2562.052931 1860.235255 1918.549022 1939.965832 2325.843003 1.176843133 1.060439697 0.910516325 0.781267414 0.850988283 1.101558845 0.799811188 0.824883287 0.83409148 1 11.183538 -6.748196417 4.14155688 1.085066539 0.876758328 0.169753516 0.121585585 0.140259413 5.460015508 0.016910434 0.023492668 1.79E-07 6.748196417 -0.20830821 LIYFQLHR ddPTM_HeLa_CUDC101_4h_R1 1 LIYFQLHR 8 0 Q13263-2;Q13263 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 0 0 95.352 0.012113 268940 172.87 0 50.31 229.98 145.01 0 68.866 0 75.628 0 FALSE FALSE TRUE 152.6064407 0 53.02991078 239.3595785 134.3129012 0 71.52218469 0 72.51058183 0 0 LIYSGK(ac)QMNDEK ddPTM_HeLa_CUDC101_4h_R1 2 LIYSGKQMNDEK 12 1 S4R3E9;Q15843 S4R3E9 NEDD8-MDP1;NEDD8 NEDD8 0 1 ; LIYSGK(1)QMNDEK;LIYSGK(1)QMNDEK 216.91 2.47E-16 2105700 626.48 662.96 740.77 768.39 1267.67 681.72 633.86 231.352 1419.05 1194.14 FALSE TRUE FALSE 553.0449641 683.3850118 780.8182669 799.7282655 1174.15651 668.7173268 658.3081925 257.6881765 1360.556158 1187.037202 0.465903649 0.575706482 0.657787528 0.673717946 0.989148872 0.563349932 0.554580927 0.217085173 1.146178195 1 10.21314943 -9.405635519 1.079316508 1.004873553 0.592323511 0.502224749 0.188784941 0.432098733 0.883416289 0.137332695 0.033269741 3.93E-10 9.405635519 -0.412550041 LK(ac)DDEVAQLK ddPTM_HeLa_CUDC101_4h_R1 1 LKDDEVAQLK 10 1 A0A5F9ZHM4;P07195 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 0 1 LK(1)DDEVAQLK 137.17 0.0011922 3250100 1580.7 586.74 469.01 561.35 1072.1 1350 1158.9 909.78 1257 889.11 FALSE TRUE FALSE 1395.412742 604.8167639 494.3660993 584.2442794 993.0133189 1324.250999 1203.599161 1013.345678 1205.185928 883.8215342 1.578839945 0.684320013 0.559350593 0.661043273 1.12354506 1.498323981 1.361812441 1.146550111 1.363607789 1 9.787611272 -7.264378432 24.99663772 1.273341077 1.011881227 0.163307368 0.316392731 496.814483 4225398.507 0.06562491 0.076800397 5.44E-08 7.264378432 -0.26145985 LK(ac)LEDFFAR ddPTM_HeLa_CUDC101_4h_R1 1 LKLEDFFAR 9 1 P11413-3;P11413;P11413-2;E9PD92;E7EM57;E7EUI8 P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 1 LK(1)LEDFFAR 94.692 0.0181 532290 421.53 173.05 0 0 438.19 246.86 367.45 521.54 311.03 201.9 FALSE TRUE FALSE 372.1188924 178.3814654 0 0 405.8655967 242.1515568 381.6226696 580.9100055 298.2092118 200.6990898 1.854113503 0.88880057 0 0 2.022259279 1.206540383 1.901466867 2.894432685 1.485852338 1 7.648890264 -9.844017901 1.921125995 0.997984461 1.393363953 0 0.866717846 1.421055613 9.495054682 0.686394581 0.138815222 1.43E-10 9.844017901 0.395379493 LK(ac)LEPHEGLLLR ddPTM_HeLa_CUDC101_4h_R1 2 LKLEPHEGLLLR 12 1 F5GZI0;F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4 F5GZI0 SLC3A2 4F2 cell-surface antigen heavy chain 0 1 ; LK(1)LEPHEGLLLR;LK(1)LEPHEGLLLR 90.793 0.022925 1343170 1353.92 460.1 433.151 285.89 846.94 1026.75 824.63 773.95 977.98 898.63 FALSE TRUE FALSE 1195.21555 474.2751356 456.5684533 297.5498299 784.4629235 1007.166454 856.4362553 862.0533396 937.6672505 893.2849088 1.338000383 0.530933783 0.511111795 0.333096224 0.878177741 1.127486253 0.958749271 0.965037393 1.049684419 1 9.802976579 -7.265730862 24.97032435 1.159611292 0.758553795 0.324774416 0.244247775 329.4829279 1917118.07 0.047958758 0.055861443 5.42E-08 7.265730862 -0.401057497 LK(ac)LSEELSGGR ddPTM_HeLa_CUDC101_4h_R1 2 LKLSEELSGGR 11 1 P61158;B4DXW1 P61158 ACTR3 Actin-related protein 3 0 1 ; LK(1)LSEELSGGR;LK(1)LSEELSGGR 165.63 0.00026211 1402170 1051.18 917.43 833.75 931.62 1226.25 1301.99 1374.71 906.26 1167.19 706.19 FALSE TRUE FALSE 927.9622739 945.6949309 878.825047 969.6154904 1135.791981 1277.15671 1427.733025 1009.424975 1119.077934 701.9895505 1.321903258 1.347163829 1.251906166 1.381239208 1.617961378 1.819338634 2.033838003 1.437948719 1.594151841 1 9.455305745 -6.004226945 0.275422428 0.995744108 2.032805863 0.252883842 0.243027371 1.400766143 0.191075193 0.141776332 0.495361454 9.90E-07 6.004226945 1.037061755 EVS(ph)PPGAR ddPTM_HeLa_CUDC101_4h_R1 1 EVSPPGAR 8 0 Q8NFC6;H0Y9Y2 Q8NFC6;H0Y9Y2 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 EVS(1)PPGAR 91.265 0.027661 289720000 1009.7 876.81 979.11 1100.8 1144.2 970.61 893.57 1156.9 1145.9 882.24 TRUE FALSE FALSE 891.3444966 903.8234768 1032.043648 1145.695382 1059.794646 952.0972314 928.0352942 1288.59682 1098.665517 876.9923972 1.016365135 1.030594427 1.176798854 1.306391464 1.208442227 1.085639094 1.058202211 1.469336363 1.252765156 1 9.776420526 -6.748175797 3.793629921 1.008484567 1.210484806 0.155847431 0.132259558 0.149854719 4.684927038 0.016589811 0.023099642 1.79E-07 6.748175797 0.20200024 TAQSPAMVGS(ph)PIR ddPTM_HeLa_CUDC101_4h_R1 2 TAQSPAMVGSPIR 13 0 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 0 TAQSPAMVGS(1)PIR;TAQSPAMVGS(1)PIR ; 151.49 0.00028153 32641000 3112.3 2780.8 2331.9 2334.4 2470.8 2560.2 2436.5 2152.9 2776.4 2798.5 TRUE FALSE FALSE 2747.480912 2866.473152 2457.969568 2429.606922 2288.534007 2511.368451 2530.476621 2397.977434 2661.955617 2781.854398 0.987643679 1.03041811 0.883572329 0.873376739 0.822664913 0.902767755 0.909636616 0.862006809 0.956899692 1 11.4418312 -6.748153013 23.31362242 0.996721008 0.875932722 0.811430914 0.027868873 27.39906973 48076.78874 0.003927065 0.00553119 1.79E-07 6.748153013 -0.120788286 LKATVTPSPVK(ac)GK ddPTM_HeLa_CUDC101_4h_R1 2 LKATVTPSPVKGK 13 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 1 ; LKATVTPSPVK(1)GK;LKATVTPSPVK(1)GK 132.24 0.0018145 4704200 3157.1 4623.7 4170.3 8195.8 10533.9 8558.3 8503.6 8396.2 1141.37 233.694 FALSE TRUE FALSE 2787.029524 4766.150717 4395.759032 8530.060149 9756.835183 8395.064687 8831.586701 9351.989469 1094.322246 232.3039777 11.9973388 20.51687089 18.9224441 36.71938911 42.00029324 36.13827352 38.01737184 40.25755203 4.710733998 1 7.859870047 -6.794967246 0.62072046 3.421243248 41.37614022 0.941121968 3.571470373 0.118592522 0.095276751 1.034368478 1.757682467 1.60E-07 6.794967246 37.95489697 LKDDEVAQLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LKDDEVAQLKK 11 2 A0A5F9ZHM4;P07195 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 0 1 ; LKDDEVAQLK(1)K;LKDDEVAQLK(1)K 158.42 0.00018769 49513000 26234 11444.1 10910.1 9150.1 24786.2 20912.1 25375.1 20617.7 20995.2 15617.5 FALSE TRUE FALSE 23158.89029 11796.67916 11499.93301 9523.280628 22957.77141 20513.23653 26353.82611 22964.73563 20129.76897 15524.60642 1.491753779 0.759869773 0.740755205 0.613431373 1.478798933 1.321336979 1.697551964 1.479247526 1.296636348 1 13.92226907 -5.572745381 24.99987815 1.115731663 1.499345389 0.401050366 0.279005436 121.4357619 60879.56881 0.049196512 0.098393041 2.67E-06 5.572745381 0.383613726 LKDDEVAQLKK ddPTM_HeLa_CUDC101_4h_R1 1 LKDDEVAQLKK 11 2 A0A5F9ZHM4;P07195 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 0 0 79.07 0.019687 43716000 5366.5 5107 5253.6 4602.7 5923.9 5121.1 4818.5 4783.5 5277.8 4747 FALSE FALSE TRUE 4737.447005 5264.340617 5537.625507 4790.418001 5486.905699 5023.42355 5004.351159 5328.034304 5060.24685 4718.764633 1.003959166 1.115618393 1.173532892 1.015184773 1.162784357 1.064563279 1.06052146 1.129116351 1.072366868 1 12.2041935 -7.267360068 23.97407683 1.001869602 1.101559666 0.301709367 0.050375434 147.6836068 597999.5428 0.007090197 0.008223082 5.40E-08 7.267360068 0.099690064 LKDLEALLNSK ddPTM_HeLa_CUDC101_4h_R1 1 LKDLEALLNSK 11 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 120.87 0.00022255 0 6920.5 5962.3 6078.5 6565.2 7004.4 6141.3 5768.1 6293.5 6447.2 5398.7 FALSE FALSE TRUE 6109.289481 6145.991396 6407.122096 6832.957233 6487.699367 6024.164935 5990.577549 7009.926601 6181.443687 5366.588292 1.138393547 1.145232513 1.193891118 1.273240439 1.208905736 1.122531599 1.116272988 1.306216579 1.151838626 1 12.3897895 -8.486631411 0.486312348 0.988309276 1.201536225 0.217665253 0.07244836 0.523261496 0.253376896 0.050109483 0.018670234 3.26E-09 8.486631411 0.213226949 ALPQT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 ALPQTPR 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ALPQT(1)PR 117.53 0.0042062 11879000 4434.1 3687.6 3167.6 3361.6 3127.5 3035.7 3361 3579.2 3643.3 3459.8 TRUE FALSE FALSE 3914.34152 3801.210585 3338.850037 3498.700578 2896.790556 2977.79908 3490.634896 3986.64166 3493.121632 3439.220956 1.138147729 1.10525338 0.970815798 1.017294505 0.842281026 0.86583535 1.014949298 1.159169972 1.01567235 1 11.74786609 -6.748126084 24.32946199 1.070060479 0.970518061 0.177205526 0.089942186 215.7801304 394327.031 0.015643166 0.022041222 1.79E-07 6.748126084 -0.099542418 VQGGVPAGSDEY(ph)EDECPHLIALSSLNR ddPTM_HeLa_CUDC101_4h_R1 1 VQGGVPAGSDEYEDECPHLIALSSLNR 27 0 Q9BVS4-2;Q9BVS4;H0Y919;H0Y8R4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 0 VQGGVPAGS(0.456)DEY(0.544)EDECPHLIALSSLNR 67.285 0.004835 11705000 1320.3 956.52 1218.5 1025.6 1530.2 1479.8 848.1 1144.5 1352 1048.8 TRUE FALSE FALSE 1165.536435 985.9892474 1284.375796 1067.428401 1417.320195 1451.575281 880.8115011 1274.785254 1296.269988 1042.561691 1.117954406 0.945737078 1.23194225 1.023851548 1.359459308 1.392315959 0.844853124 1.222743234 1.243350872 1 10.02591704 -6.748072239 24.99928868 1.049009757 1.174817099 0.074229623 0.165594264 363.0784885 679029.4862 0.024001657 0.033829776 1.79E-07 6.748072239 0.125807342 LKDVLLQVDDERR ddPTM_HeLa_CUDC101_4h_R1 2 LKDVLLQVDDERR 13 2 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 72.152 0.02273 108266000 10181.1 9066.1 9318.7 9524.2 10321.4 9976.8 9733 9597.6 9682.6 9555.6 FALSE FALSE TRUE 8987.686892 9345.415795 9822.49711 9912.638043 9560.010885 9786.509162 10108.40507 10690.15199 9283.47913 9498.762866 0.946195522 0.983856101 1.034081727 1.043571482 1.006448 1.030293029 1.064181222 1.125425715 0.977335603 1 13.21352391 -1.329631434 0.359895362 0.975733891 2.428767608 0.765558697 0.023256735 18.17184143 0.284075954 0.008556285 17.68696254 0.046813226 1.329631434 1.453033717 LKDYAFIHFDER ddPTM_HeLa_CUDC101_4h_R1 2 LKDYAFIHFDER 12 1 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 0 ; ; 117.07 0.0022512 84651000 39366 35337 32790 35504 38283 36254 35128 35984 32892 29840 FALSE FALSE TRUE 34751.57715 36425.69109 34562.72658 36952.00658 35458.93936 35562.51535 36482.89873 40080.27311 31536.17784 29662.51035 1.171565614 1.228004328 1.165198972 1.245747785 1.195412625 1.19890444 1.229932945 1.351209747 1.063166181 1 14.85635308 -13.52287875 0.120462276 0.209436025 1.3417682 0.770180309 0.044231064 23.94969019 0.208191921 4.545636589 0.18217275 3.00E-14 13.52287875 1.132332175 LKDYAFVHFEDR ddPTM_HeLa_CUDC101_4h_R1 2 LKDYAFVHFEDR 12 1 O43390;B4DT28;O43390-4;O43390-3;O43390-2 O43390 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 0 ; ; 102.87 0.0052298 93447000 30608 27932 26893.3 28603 28555 27712 27883.4 27478.6 24000.6 24514.4 FALSE FALSE TRUE 27020.17664 28792.55181 28347.23315 29769.55397 26448.55454 27183.43977 28958.87208 30606.65275 23011.28511 24368.58726 1.108811781 1.181543743 1.163269452 1.221636431 1.085354447 1.115511518 1.188368935 1.255987983 0.944301156 1 14.57273499 -8.351178914 0.47684085 0.989675725 1.178773901 0.698451712 0.05073265 0.478665334 0.235916166 0.039670319 0.016852236 4.45E-09 8.351178914 0.189098176 SDIS(ph)PLTPR ddPTM_HeLa_CUDC101_4h_R1 2 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.041)DIS(0.959)PLTPR;S(0.007)DIS(0.993)PLTPR ; 133.91 0.00268 162331000 5506.7 5024.6 4467.2 4511.3 4744 4531.4 4569.1 4804.5 5446.2 5264.6 TRUE FALSE FALSE 4861.212974 5179.40197 4708.710345 4695.290314 4394.044571 4444.971095 4745.331718 5351.42486 5221.705331 5233.285925 0.928902614 0.98970361 0.89976172 0.89719736 0.839633957 0.849365228 0.906759498 1.022574523 0.997787128 1 12.35350137 -6.747668051 23.56976418 0.967233943 0.897219641 0.344191611 0.050397186 116.2695262 198994.9128 0.00843876 0.011891031 1.79E-07 6.747668051 -0.070014302 ERRS(ph)T(ph)KLR ddPTM_HeLa_CUDC101_4h_R1 1 ERRSTKLR 8 3 B4DND0 B4DND0 UPP1 2 0 ERRS(1)T(1)KLR 92.47 0.039108 47682000 574.75 505.04 388.09 362.36 330.89 527.06 323.53 408.12 387.64 547.17 TRUE FALSE FALSE 507.3786763 520.5996838 409.0713193 377.1386071 306.4809039 517.0072086 336.0086605 454.5787311 371.6613151 543.9154085 0.932826444 0.957133546 0.752086286 0.693377318 0.563471634 0.950528705 0.61775904 0.835752626 0.683307201 1 9.087238486 -6.747597606 4.547725238 0.967360853 0.728083425 0.17133332 0.135844191 0.103463752 5.193398233 0.015237796 0.021137175 1.79E-07 6.747597606 -0.239277428 LKEFLEDYDDDRDDPK ddPTM_HeLa_CUDC101_4h_R1 1 LKEFLEDYDDDRDDPK 16 2 P49756 P49756 RBM25 RNA-binding protein 25 0 0 63.29 0.023683 44342000 3558.7 3569.6 2791.9 3746.3 3416.2 3352.7 2949.7 2764.5 3049 4169 FALSE FALSE TRUE 3141.554581 3679.575145 2942.838559 3899.090307 3164.193732 3288.752833 3063.470917 3079.199506 2923.318929 4144.202603 0.758060086 0.887884956 0.710109722 0.940854172 0.763522934 0.793579163 0.739218424 0.743013747 0.705399617 1 12.01687882 -9.432155967 0.701019861 1.031988579 0.789662761 0 0.11399823 0.562593365 0.38666209 0.085585972 0.013119464 3.70E-10 9.432155967 -0.242325818 GGGSGGGEES(ph)EGEEVDED ddPTM_HeLa_CUDC101_4h_R1 2 GGGSGGGEESEGEEVDED 18 0 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 GGGSGGGEES(1)EGEEVDED;GGGSGGGEES(1)EGEEVDED ; 204.18 1.91E-17 38641000 11738.8 10231.2 9222.5 8576.6 10188.7 9743.5 10184.6 9525.1 10310.1 10255.2 TRUE FALSE FALSE 10362.79566 10546.41115 9721.096247 8926.390819 9437.0999 9557.658971 10577.42343 10609.39888 9885.113314 10194.20161 1.016538229 1.034549987 0.953590739 0.875634126 0.925732123 0.937558362 1.037592137 1.040728768 0.969679989 1 13.31546117 -6.74750551 24.89168928 1.010033452 0.958592059 0.15494619 0.048774094 285.1761269 509441.8401 0.008048016 0.011347925 1.79E-07 6.74750551 -0.051441393 EEEEGISQES(ph)S(ph)EEEQ ddPTM_HeLa_CUDC101_4h_R1 2 EEEEGISQESSEEEQ 15 0 P17096;P17096-2 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 2 0 EEEEGISQES(1)S(1)EEEQ;EEEEGISQES(1)S(1)EEEQ ; 130.41 0.0064713 32842000 11729.8 10165.5 8169.1 8416.8 8565.4 9086.6 8262.7 7580.1 10083.1 9618.4 TRUE FALSE FALSE 10354.85063 10478.68701 8610.746256 8760.073485 7933.547507 8913.288244 8581.395107 8442.987944 9667.47035 9561.189329 1.083008637 1.095960622 0.900593635 0.916211695 0.829765758 0.93223635 0.897523813 0.883047878 1.011115879 1 13.22297437 -6.746916434 24.48001945 1.044550928 0.893357903 0.809025237 0.036712995 67.403118 113614.9114 0.006729059 0.009490528 1.79E-07 6.746916434 -0.151193025 LKGSGNLEAIHIIK ddPTM_HeLa_CUDC101_4h_R1 1 LKGSGNLEAIHIIK 14 1 F5GWF6;P78371-2;P78371;F8VQ14 F5GWF6 CCT2 T-complex protein 1 subunit beta 0 0 82.85 0.012952 522440 1556.9 1456.5 1536.7 1383.7 1631.9 1699.3 1565.7 1692.4 1241.6 1618.5 FALSE FALSE TRUE 1374.402542 1501.373039 1619.77865 1440.133267 1511.517988 1666.888684 1626.089573 1885.055975 1190.420722 1608.87309 0.854264112 0.933183014 1.006778384 0.895119246 0.939488638 1.03605977 1.010700958 1.171662319 0.739909648 1 10.65183481 -3.159667879 0.709373294 0.932414415 2.085426279 0.516245349 0.076790964 6.064393521 0.668493135 0.010173031 8.083965483 0.00069236 3.159667879 1.153011864 LKLEDFFAR ddPTM_HeLa_CUDC101_4h_R1 1 LKLEDFFAR 9 1 P11413-3;P11413;P11413-2;E9PD92;E7EM57;E7EUI8 P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 87.149 0.040672 37844000 5543.6 4860.6 3976.8 4573.4 4646.7 4527.6 4421.4 4278.9 4052.9 2958.5 FALSE FALSE TRUE 4893.787612 5010.349325 4191.797837 4759.92302 4303.922199 4441.243573 4591.934879 4765.99268 3885.837747 2940.90271 1.664042674 1.703677346 1.425343933 1.618524477 1.463469765 1.510163379 1.561403192 1.620588353 1.321307819 1 11.52204334 -9.279510653 0.916678223 0.986065113 1.570691831 0.590043023 0.126194041 0.170496015 0.247422416 0.068415747 0.01687864 5.25E-10 9.279510653 0.584626718 LKLSILYPATTGR ddPTM_HeLa_CUDC101_4h_R1 1 LKLSILYPATTGR 13 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 91.712 0.036147 0 3412.6 3340.3 2682.5 3876 5071.3 3356.1 3738.4 5116.3 3261 1081.1 FALSE FALSE TRUE 3012.580201 3443.210684 2827.524064 4034.080034 4697.200302 3292.087984 3882.59134 5698.718911 3126.5802 1074.669569 2.803261847 3.203971512 2.631063673 3.753786419 4.370832149 3.063349032 3.612823376 5.302763822 2.909340964 1 10.06967742 -7.896847488 0.201648541 4.89E-13 4.980224872 0.471777703 0.78450884 1.044600527 0.161846064 2.016288003 1.362995642 1.27E-08 7.896847488 4.980224872 LIS(ph)QIVSSITASLR ddPTM_HeLa_CUDC101_4h_R1 1 LISQIVSSITASLR 14 0 Q9BQE3;F5H5D3;F8VVB9;Q9NY65;C9J2C0;Q9NY65-2;C9JDS9;Q9H853;P68363;P68363-2;P68366-2;P68366 Q9BQE3;P68363;P68366-2 TUBA1C;TUBA1B;TUBA8;TUBA4A;TUBA4B Tubulin alpha-1C chain;Tubulin alpha-8 chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-1B chain;Tubulin alpha-4A chain 1 0 LIS(1)QIVSSITASLR 126.07 0.0010961 7105900 454.11 332.87 253.62 277.39 271.15 324.41 202.95 242.04 309.18 245.55 TRUE FALSE FALSE 400.8799142 343.1253302 267.3314644 288.7031632 251.1478047 318.2224198 210.7778495 269.5928552 296.4354695 244.0894577 1.642348334 1.405735968 1.095219216 1.182776044 1.02891705 1.303712265 0.863527051 1.104483814 1.21445421 1 7.931266176 -6.746740875 23.78247541 1.319486939 1.096128935 0.25650046 0.182776491 199.6466881 323030.4405 0.040967177 0.057770088 1.79E-07 6.746740875 -0.223358004 HNIAGTTHSGAEKDVDVSEDS(ph)PPPLPER ddPTM_HeLa_CUDC101_4h_R1 1 HNIAGTTHSGAEKDVDVSEDSPPPLPER 28 1 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 HNIAGTTHS(0.001)GAEKDVDVS(0.088)EDS(0.911)PPPLPER 48.244 0.015371 14163000 881.71 692.71 956.75 934.39 1061 916.93 916.91 780.52 919.45 889.83 TRUE FALSE FALSE 778.3572904 714.051574 1008.474799 972.498463 982.7321438 899.441088 952.2755258 869.3712418 881.5498818 884.5372516 0.879959876 0.807260037 1.14011569 1.099443196 1.111012727 1.016849303 1.076580465 0.982854301 0.996622675 1 9.788779092 -6.746728383 24.99999575 0.931526436 1.072020575 0.54424419 0.067046313 161.3615589 274218.5255 0.011648107 0.01643268 1.79E-07 6.746728383 0.140494139 TFS(ph)ATVR ddPTM_HeLa_CUDC101_4h_R1 2 TFSATVR 7 0 H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9;Q9Y2V2 H3BTK3 CARHSP1 Calcium-regulated heat stable protein 1 1 0 T(0.227)FS(0.77)AT(0.003)VR;T(0.036)FS(0.759)AT(0.205)VR ; 90.601 0.032744 3593750000 23917.2 22277.5 28603.7 28025.9 30938.1 30088.3 29899.9 29886.7 30985.9 29224.4 TRUE FALSE FALSE 21113.66207 22963.84337 30150.10254 29168.91734 28655.858 29514.41581 31053.14916 33288.88112 29708.64809 29050.57197 0.726789892 0.790478184 1.037848844 1.004073771 0.986412868 1.015966771 1.068934174 1.145894172 1.022652777 1 14.82627895 -6.74632559 24.65952513 0.86134132 1.038762751 0.403786829 0.092317432 168.1483124 274348.3949 0.017895522 0.025248937 1.79E-07 6.74632559 0.177421432 DLGSTEDGDGTDDFLT(ph)DKEDEK ddPTM_HeLa_CUDC101_4h_R1 1 DLGSTEDGDGTDDFLTDKEDEK 22 1 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 0 DLGSTEDGDGT(0.012)DDFLT(0.988)DKEDEK 114.56 9.65E-06 54542000 4360.4 3696.1 3126.1 3187.3 3113.8 3455.7 3031.2 3984.3 3220.1 3410.7 TRUE FALSE FALSE 3849.280522 3809.97246 3295.106422 3317.291871 2884.101178 3389.78828 3148.114399 4437.856607 3087.366115 3390.413005 1.135342661 1.123748775 0.971889389 0.978432971 0.850663672 0.999815738 0.928534192 1.308942775 0.910616527 1 11.72724531 -6.746216639 24.94584458 1.070185359 0.994194667 0 0.127380961 467.3530893 765859.9301 0.018591798 0.026233889 1.79E-07 6.746216639 -0.075990692 SVCPGGSS(ph)PGSSS(ph)GGGR ddPTM_HeLa_CUDC101_4h_R1 1 SVCPGGSSPGSSSGGGR 17 0 Q53LP3 Q53LP3 SOWAHC Ankyrin repeat domain-containing protein SOWAHC 2 0 SVCPGGS(0.399)S(0.595)PGS(0.006)S(0.123)S(0.876)GGGR 139 0.002006 5933100 2667.2 2458.5 1772 1680.2 2305.6 2283.4 1929.3 1708.7 2148.6 2190.6 TRUE FALSE FALSE 2354.554859 2534.243471 1867.79968 1748.725818 2135.520481 2239.847949 2003.713747 1903.211501 2060.033799 2177.570214 1.081276206 1.163794148 0.85774487 0.803062885 0.980689609 1.028599645 0.92016034 0.87400695 0.946024053 1 11.08850352 -6.745384087 24.99998494 1.048858865 0.914786607 0.420671852 0.07870684 183.8489224 286273.8117 0.012473384 0.017607888 1.80E-07 6.745384087 -0.134072258 LKPEGLHQLLAGFEDK ddPTM_HeLa_CUDC101_4h_R1 2 LKPEGLHQLLAGFEDK 16 1 Q9BY32-3;Q9BY32-2;Q9BY32 Q9BY32-3 ITPA Inosine triphosphate pyrophosphatase 0 0 ; ; 72.315 0.016216 11042800 6931.8 6304.6 5616.9 6022 7180.9 6530.5 5456.2 5850.9 6449.6 6606.1 FALSE FALSE TRUE 6119.264912 6498.837253 5920.566604 6267.603189 6651.179313 6405.941593 5666.647462 6516.942806 6183.744758 6566.806623 0.931847892 0.989649555 0.901589912 0.954436996 1.012848359 0.975503309 0.862922846 0.992406687 0.941666949 1 12.68097626 -9.455239627 1.113536288 1.000825071 0.95006404 0 0.046260572 0.766319724 1.654422011 0.031028542 0.007193707 3.51E-10 9.455239627 -0.050761031 (ac)ADVLDLHEAGGEDFAMDEDGDES(ph)IHK ddPTM_HeLa_CUDC101_4h_R1 1 ADVLDLHEAGGEDFAMDEDGDESIHK 26 0 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 1 0 ADVLDLHEAGGEDFAMDEDGDES(1)IHK 49.525 7.14E-06 3835400 969.09 643.97 732.93 757.7 600.84 624.67 809.3 557.98 693.11 791.07 TRUE FALSE FALSE 855.4947392 663.8099524 772.5544128 788.6022811 556.5172302 612.7554605 840.5149721 621.4981878 664.5397124 786.3646805 1.087910941 0.844150264 0.982437833 1.0028455 0.707708833 0.779225563 1.068861551 0.790343467 0.845078281 1 9.619054714 -6.745306835 1.078475632 1.038723651 0.865548365 0 0.126501034 0.434718964 1.009619245 0.021382834 0.033151684 1.80E-07 6.745306835 -0.173175286 MEVGPFSTGQES(ph)PTAENAR ddPTM_HeLa_CUDC101_4h_R1 2 MEVGPFSTGQESPTAENAR 19 0 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 1 0 MEVGPFS(0.024)T(0.024)GQES(0.476)PT(0.476)AENAR;MEVGPFS(0.001)T(0.013)GQES(0.701)PT(0.285)AENAR ; 214.34 1.50E-24 23093500 3273.1 2416.51 1809.1 1961.4 1880.77 2250.44 2155.17 1614 2259.44 1673.5 TRUE FALSE FALSE 2889.43218 2490.959809 1906.905418 2041.39437 1742.029344 2207.516606 2238.295629 1797.731236 2166.304927 1663.545948 1.736911556 1.497379626 1.1462896 1.227134347 1.047178376 1.32699467 1.345496728 1.080662208 1.302221276 1 10.700046 -6.745128459 24.63109826 1.368913685 1.203094169 0.184565694 0.192666819 460.4883979 695380.5503 0.04595603 0.064873976 1.80E-07 6.745128459 -0.165819517 PELVIS(ph)Y(ph)LPPGMAS(ph)KINTK ddPTM_HeLa_CUDC101_4h_R1 1 PELVISYLPPGMASKINTK 19 1 P78347-2;P78347-4;P78347-3;P78347;A0A494C1K3 P78347-2 GTF2I General transcription factor II-I 3 0 PELVIS(1)Y(1)LPPGMAS(0.981)KINT(0.019)K 55.851 0.023793 11893000 2576.9 2019.3 2166.6 1856 2238.3 1872.8 1920.1 1911.2 2252.2 2345.7 TRUE FALSE FALSE 2274.839688 2081.51224 2283.73295 1931.695702 2073.185068 1837.07946 1994.1589 2128.763283 2159.363363 2331.747672 0.975594279 0.892683314 0.979408268 0.828432564 0.8891121 0.787855171 0.85522071 0.912947532 0.92607077 1 11.18719596 -6.744982137 0.820401741 0.992986952 0.84959032 0.446495792 0.048512401 0.243543698 0.329007208 0.00874445 0.014374617 1.80E-07 6.744982137 -0.143396632 LKPTNPAAQK(ac)ALTTPTHYK ddPTM_HeLa_CUDC101_4h_R1 2 LKPTNPAAQKALTTPTHYK 19 2 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4;H0YCR0 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 0 1 ; LKPTNPAAQK(1)ALTTPTHYK;LKPTNPAAQK(1)ALTTPTHYK 80.859 0.006349 4665700 2495.42 2596.11 3057.43 2061.16 3382.76 2925.3 2666.26 2580.56 3777.4 3423.83 FALSE TRUE FALSE 2202.91065 2676.093072 3222.723914 2145.223014 3133.220534 2869.504776 2769.098541 2874.320519 3621.693973 3403.464907 0.647255286 0.786284902 0.946895003 0.630305607 0.92059728 0.843112785 0.813611604 0.844527738 1.064119676 1 11.73278852 -9.6166571 1.443532213 0.999358155 0.784777221 0.430718448 0.100536792 0.355151549 1.335174829 0.072529631 0.016857169 2.42E-10 9.6166571 -0.214580934 LKQIEEQTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 LKQIEEQTKK 10 2 P26038 P26038 MSN Moesin 0 1 LKQIEEQTK(1)K 92.247 0.0078748 0 73.234 0 0 210.63 307.56 400.3 389.08 264.1 110.78 140.71 FALSE TRUE FALSE 64.64962154 0 0 219.2204018 284.8719115 392.6649444 404.0869459 294.1640765 106.2136015 139.8730507 0.462202127 0 0 1.567281194 2.03664616 2.807295205 2.888954978 2.103079007 0.759357153 1 7.127974215 -5.854134739 2.309663433 0.624619274 2.583497321 0.847326637 0.400019279 0.096097952 1.043037199 0.069246214 0.141457318 1.40E-06 5.854134739 1.958878047 DKSDS(ph)DTEGLLFSR ddPTM_HeLa_CUDC101_4h_R1 1 DKSDSDTEGLLFSR 14 1 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 DKS(0.019)DS(0.968)DT(0.013)EGLLFSR 147.53 0.0015289 62760000 6198.1 5124.7 3600.3 4223.2 4134.8 4175.9 3924.1 2776.3 4897.8 4050.8 TRUE FALSE FALSE 5471.568114 5282.585933 3794.943108 4395.44035 3829.784042 4096.251665 4075.453851 3092.34277 4695.910611 4026.705661 1.358819982 1.311887775 0.942443632 1.091572298 0.951096098 1.017271191 1.012106221 0.767958483 1.166191673 1 11.9753843 -6.744434059 24.99987629 1.184860579 0.973608579 0.499430187 0.119161136 236.1064481 347104.191 0.025108966 0.035457669 1.80E-07 6.744434059 -0.211252 RY(ph)S(ph)SEKHY(ph)GRESR ddPTM_HeLa_CUDC101_4h_R1 1 RYSSEKHYGRESR 13 3 J3KTM8;J3KSW2;J3KQ09;X6R2I3;Q9UNA4 J3KTM8 POLI DNA polymerase iota 3 0 RY(0.941)S(0.591)S(0.468)EKHY(0.962)GRES(0.037)R 53.995 0.0032223 0 0 0 238.29 169.35 306.98 220.83 198.75 202.49 236.4 187.25 TRUE FALSE FALSE 0 0 251.1726782 176.256825 284.334697 216.6180357 206.4158541 225.5406431 226.6554919 186.1362287 0 0 1.349402424 0.9469238 1.527562361 1.163760742 1.108950447 1.211696641 1.217686066 1 7.540215072 -6.744228668 24.99194105 0.474999976 1.212367689 0.410702989 0.384721114 181.852821 264070.6848 0.067698365 0.095606196 1.80E-07 6.744228668 0.737367713 SSS(ph)DALSASFNGEMLGNR ddPTM_HeLa_CUDC101_4h_R1 1 SSSDALSASFNGEMLGNR 18 0 G3V174;A7KAX9-2;A7KAX9 G3V174 ARHGAP32 Rho GTPase-activating protein 32 1 0 S(0.182)S(0.131)S(0.681)DALS(0.004)AS(0.001)FNGEMLGNR 67.685 0.022281 6752100 493.34 312.9 495.56 580.05 373.81 403.4 438.97 465.71 380.59 391.84 TRUE FALSE FALSE 435.5114331 322.5400781 522.3514726 603.7069462 346.234781 395.7058171 455.9012199 518.7245439 364.9019191 389.5093183 1.118102732 0.828067682 1.341050003 1.549916569 0.888899867 1.015908474 1.170450099 1.331738471 0.93682462 1 8.605514032 -6.744008513 24.99921215 1.040251267 1.205412026 0.26063715 0.188083336 361.63004 518645.8686 0.030082104 0.042486287 1.80E-07 6.744008513 0.165160759 LEVS(ph)PEAQPTAR ddPTM_HeLa_CUDC101_4h_R1 2 LEVSPEAQPTAR 12 0 Q6WKZ4 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 0 LEVS(0.985)PEAQPT(0.015)AR;LEVS(0.999)PEAQPT(0.001)AR ; 104.9 0.0014071 12524000 6044.3 5206.8 4327.4 4148.4 4722.9 5316.8 3999.8 4001.2 4426.9 5112.5 TRUE FALSE FALSE 5335.796317 5367.215336 4561.352334 4317.589683 4374.501076 5215.390898 4154.073626 4456.680435 4244.421308 5082.090623 1.049921521 1.056103823 0.897534631 0.849569597 0.860768019 1.026229417 0.817394638 0.876938403 0.835172299 1 12.31120639 -6.743650967 14.11182147 1.026672032 0.888136667 0.195189264 0.080817403 0.818115268 647.786018 0.008472361 0.011900996 1.80E-07 6.743650967 -0.138535365 (ac)MFPTGFSSPS(ph)PSAAAAAQEVR ddPTM_HeLa_CUDC101_4h_R1 1 MFPTGFSSPSPSAAAAAQEVR 21 0 A0A669KAX4;Q13620-1;A0A669KAU9 A0A669KAX4 CUL4B Cullin-4B 1 0 MFPT(0.263)GFS(0.159)S(0.159)PS(0.41)PS(0.009)AAAAAQEVR 119.01 3.03E-07 0 133.97 165.37 0 0 158.73 139.93 0 0 173.4 65.945 TRUE FALSE FALSE 118.2662397 170.4648537 0 0 147.0208041 137.2610684 0 0 166.2523786 65.55275621 1.804138324 2.60042237 0 0 2.242786004 2.093902321 0 0 2.536161532 1 6.034584536 -6.743450262 24.99761141 1.481894178 0.788489108 0.236268398 0.948925478 433.2884183 602094.5736 0.151085691 0.213419746 1.81E-07 6.743450262 -0.69340507 T(ph)SPLVSQNNEQGSTLR ddPTM_HeLa_CUDC101_4h_R1 1 TSPLVSQNNEQGSTLR 16 0 A0A1W2PNZ9;Q15652-3;Q15652;H7BXU7 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 T(0.963)S(0.037)PLVSQNNEQGSTLR 113.95 0.0056827 4620800 1451.4 1303.9 860.38 823.94 1059.8 973.08 1019.3 858.7 1227 1076.3 TRUE FALSE FALSE 1281.269092 1344.071613 906.8947453 857.5438346 981.6206654 954.5201203 1058.614742 956.450937 1176.422541 1069.89812 1.197561776 1.25626131 0.847645891 0.801519153 0.91748985 0.892159826 0.989453783 0.893964499 1.099565014 1 10.06325771 -6.743275987 24.99998525 1.108122407 0.89215095 0.698837073 0.078750439 146.9668214 202283.7524 0.015950633 0.022532062 1.81E-07 6.743275987 -0.215971458 DGQDAIAQS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 4 DGQDAIAQSPEK 12 0 Q9NWH9;H0YL55;H7BXE3 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK;DGQDAIAQS(1)PEK ;;; 179.55 1.11E-07 459490000 23723.1 18428.2 18297.8 18323.9 15771.2 18180.9 16777.1 15054.6 17838 21961.2 TRUE FALSE FALSE 20942.31418 18995.951 19287.03442 19071.22784 14607.79 17834.12962 17424.19837 16768.35481 17102.71009 21830.57381 0.95931121 0.870153536 0.883487287 0.873601767 0.669143657 0.816933617 0.798155766 0.768113333 0.783429251 1 14.41406243 -6.742528008 0.758876795 0.989756672 0.768800415 0.221452513 0.080655784 0.193765825 0.225326062 0.010355759 0.017395071 1.81E-07 6.742528008 -0.220956257 QVHPDTGISS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 QVHPDTGISSK 11 0 O60814;P57053;P58876;P62807;Q16778;Q5QNW6;Q5QNW6-2;Q8N257;Q93079;U3KQK0;Q99877;Q99879;Q99880 O60814;P58876;P62807;Q16778;Q5QNW6;Q8N257;Q93079;U3KQK0;Q99879;Q99880 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST2H2BF;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 2-F;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 1 0 QVHPDT(0.004)GIS(0.199)S(0.797)K 102.9 0.011002 84312000 3122.2 2847.9 3004.6 3186.1 3373.4 3298.3 2907.1 2637.5 3140.1 3305.4 TRUE FALSE FALSE 2756.220449 2935.640423 3167.037764 3316.042929 3124.551003 3235.390423 3019.227821 2937.742339 3010.663749 3285.739334 0.838843307 0.89344897 0.963873711 1.009222763 0.950943056 0.984676535 0.918888419 0.894088679 0.916281982 1 11.68200232 -6.742312959 24.67447485 0.919488158 0.955855018 0.146461839 0.04756354 504.458222 650786.1236 0.01073351 0.015165205 1.81E-07 6.742312959 0.03636686 LKSSELQAIK ddPTM_HeLa_CUDC101_4h_R1 1 LKSSELQAIK 10 1 Q9UKM9-2;Q9UKM9;Q5QPM0;Q5QPL9 Q9UKM9-2 RALY RNA-binding protein Raly 0 0 80.102 0.031563 0 0 0 0 129.38 61.624 110.27 47.529 0 0 0 FALSE FALSE TRUE 0 0 0 134.6566756 57.07812029 108.1667835 49.36220945 0 0 0 0 PATPAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLREER ddPTM_HeLa_CUDC101_4h_R1 1 PATPAEDDEDDDIDLFGSDNEEEDKEAAQLREER 34 2 P29692-2;E9PQ49;P29692;P29692-4;P29692-3;E9PRY8;A0A087X1X7;E9PK01;E9PQZ1;E9PI39;E9PL71;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 1 0 PATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER 60.234 0.00027847 33713000 966.07 1186.4 1214.3 1534 1471.4 966.37 1456.8 1633.4 1141.7 1308.7 TRUE FALSE FALSE 852.8287391 1222.951578 1279.948731 1596.563151 1362.857753 947.9381023 1512.989264 1819.339654 1094.638643 1300.915794 0.655560293 0.940069744 0.983882844 1.227260948 1.047614119 0.728669839 1.163018599 1.398506853 0.841436969 1 10.34531187 -6.742121892 2.71167622 0.837204744 1.090064696 0.306736256 0.178680985 0.294159567 4.446905033 0.033773917 0.047790272 1.81E-07 6.742121892 0.252859952 QWDS(ph)VVLER ddPTM_HeLa_CUDC101_4h_R1 1 QWDSVVLER 9 0 Q9BRX2 Q9BRX2 PELO Protein pelota homolog 1 0 QWDS(1)VVLER 103.26 0.014691 4424500 3229.6 2653.3 2211.6 2099.8 2479.8 2621.7 2245.2 1685.4 2547 2672.7 TRUE FALSE FALSE 2851.031184 2735.045028 2331.165786 2185.43892 2296.870094 2571.695441 2331.798116 1877.259123 2442.011582 2656.802662 1.073106115 1.029449822 0.877432795 0.822582329 0.864524162 0.967966299 0.8776708 0.706585834 0.919154297 1 11.37547536 -6.741214187 4.775967254 1.035564031 0.856759727 0.498735742 0.072707437 0.092818777 5.26715238 0.010470328 0.014562194 1.81E-07 6.741214187 -0.178804304 ADVLEAHEAEAEEPEAGKS(ph)EAEDDEDEVDDLPSSR ddPTM_HeLa_CUDC101_4h_R1 2 ADVLEAHEAEAEEPEAGKSEAEDDEDEVDDLPSSR 35 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 ADVLEAHEAEAEEPEAGKS(1)EAEDDEDEVDDLPSSR;ADVLEAHEAEAEEPEAGKS(0.999)EAEDDEDEVDDLPS(0.001)S(0.001)R ; 82.744 3.46E-09 97679000 5048.2 3592.7 4456.4 3683.6 4336.4 4214.4 3683.2 3976.6 4160.6 4241.2 TRUE FALSE FALSE 4456.457649 3703.386829 4697.326464 3833.83313 4016.512411 4134.017342 3825.262258 4429.28007 3989.098307 4215.973154 1.057041278 0.878418029 1.114173713 0.909359 0.952689276 0.980560642 0.907326047 1.050594942 0.946186838 1 12.04164996 -6.740997739 1.052291412 1.023538433 0.964450829 0 0.074342722 0.76893467 1.699702092 0.012739338 0.019887023 1.82E-07 6.740997739 -0.059087603 SKS(ph)PASTSSVNGTPGSQLSTPR ddPTM_HeLa_CUDC101_4h_R1 3 SKSPASTSSVNGTPGSQLSTPR 22 1 Q5VZY9;O15075-2;O15075 Q5VZY9 DCLK1 Serine/threonine-protein kinase DCLK1 1 0 S(0.175)KS(0.824)PAS(0.001)TSSVNGTPGSQLSTPR;S(0.039)KS(0.946)PAS(0.012)T(0.003)SSVNGTPGSQLSTPR;S(0.481)KS(0.508)PAS(0.007)T(0.002)S(0.001)SVNGTPGSQLSTPR ;; 110.62 9.12E-06 30960200 3059.66 2279.18 2098 2257.83 2430.5 1878.04 1877.63 2113.24 2668.48 2640.03 TRUE FALSE FALSE 2701.011293 2349.398834 2211.424226 2349.914067 2251.206857 1842.219516 1950.050818 2353.8027 2558.484125 2624.326984 1.029220562 0.895238607 0.842663372 0.895434937 0.857822547 0.701977889 0.743067015 0.8969167 0.974910573 1 11.35773177 -6.740980287 0.968632209 1.016413525 0.795338224 0.630853834 0.060337031 0.201971109 0.378168021 0.012040239 0.019103528 1.82E-07 6.740980287 -0.221075301 LKVPEWVDTVK ddPTM_HeLa_CUDC101_4h_R1 1 LKVPEWVDTVK 11 1 P39019;M0R2L9;M0QYF7;M0R140 P39019 RPS19 40S ribosomal protein S19 0 0 113.24 0.0075422 11879000 3185.2 3036.5 3302.1 3585.9 3192.7 3042.3 2709.3 3103.4 2938.2 3816.7 FALSE FALSE TRUE 2811.835684 3130.050966 3480.621514 3732.148502 2957.180882 2984.273196 2813.798609 3456.678512 2817.086152 3793.998099 0.741127331 0.825000668 0.917402019 0.983698042 0.779436575 0.78657741 0.741644707 0.911091261 0.742511219 1 11.88950324 -9.523420003 1.27751478 1.000062718 0.825207854 0 0.109851475 0.384575423 1.123125056 0.05828656 0.013957726 3.00E-10 9.523420003 -0.174854865 VGS(ph)PLDYSLVDLPSTNGQS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 3 VGSPLDYSLVDLPSTNGQSPGK 22 0 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 2 0 VGS(0.998)PLDYS(0.002)LVDLPS(0.009)T(0.023)NGQS(0.968)PGK;VGS(0.998)PLDYS(0.002)LVDLPST(0.004)NGQS(0.996)PGK;VGS(0.922)PLDY(0.001)S(0.077)LVDLPS(0.104)T(0.083)NGQS(0.814)PGK ;; 127.76 2.73E-08 7159800 3495.35 3449.17 2497.56 2912.17 2589.56 3515.45 2695.54 2448.48 3899.15 3196.81 TRUE FALSE FALSE 3085.630372 3555.434839 2632.585648 3030.94088 2398.533318 3448.398648 2799.507881 2727.205066 3738.425387 3177.795232 0.970997231 1.118836986 0.828431493 0.953787346 0.754779066 1.085154454 0.88095918 0.858206671 1.176421108 1 11.63381045 -6.740194752 24.99980178 0.995861563 0.898119778 0.312591349 0.106644986 262.9693084 309450.8009 0.013133985 0.018563799 1.82E-07 6.740194752 -0.097741785 NVST(ph)GSAENEEK ddPTM_HeLa_CUDC101_4h_R1 1 NVSTGSAENEEK 12 0 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 NVS(0.177)T(0.6)GS(0.223)AENEEK 184.87 5.49E-10 10407000 3131.8 2406.9 2046.8 2024.8 2017 2235.5 1730.7 1713.2 2582.2 2675.7 TRUE FALSE FALSE 2764.695152 2481.053736 2157.456199 2107.380096 1868.209928 2192.861562 1797.453679 1908.223763 2475.760623 2659.784817 1.039443166 0.932802428 0.811139377 0.792312251 0.70239138 0.82445074 0.675789134 0.717435392 0.930812375 1 11.37709382 -6.739950491 1.599998566 1.019619681 0.738014973 0.833893714 0.049319708 0.072209017 0.375760022 0.007009149 0.010334807 1.82E-07 6.739950491 -0.281604708 LTVENS(ph)PKQEAGISEGQGTAGEEEEKKK ddPTM_HeLa_CUDC101_4h_R1 3 LTVENSPKQEAGISEGQGTAGEEEEKKK 28 3 F8VVL1;O43583 F8VVL1 DENR Density-regulated protein 1 0 LT(0.042)VENS(0.914)PKQEAGIS(0.007)EGQGT(0.038)AGEEEEKKK;LT(0.022)VENS(0.942)PKQEAGIS(0.005)EGQGT(0.03)AGEEEEKKK;LT(0.011)VENS(0.989)PKQEAGIS(0.001)EGQGTAGEEEEKKK ;; 84.327 4.87E-07 245208000 9644.7 9635 11149.4 10826.2 12924.4 11623.7 10881.2 12045.8 10589.7 12623.6 TRUE FALSE FALSE 8514.162886 9931.84293 11752.17029 11267.73923 11970.99276 11401.99729 11300.89153 13417.04518 10153.18808 12548.51427 0.678499678 0.791475606 0.936538784 0.897934129 0.953976902 0.908633249 0.900576059 1.069213845 0.809114758 1 13.61522894 -6.739902264 22.74812538 0.839685543 0.939170078 0.318234432 0.087292801 141.2402135 149180.3539 0.020227414 0.028582699 1.82E-07 6.739902264 0.099484535 TNPS(ph)PTNPFSSDLQK ddPTM_HeLa_CUDC101_4h_R1 1 TNPSPTNPFSSDLQK 15 0 G3V3Z8;P49757-9;P49757-8;P49757-7;P49757-6;P49757-5;P49757-4;P49757-2;P49757-3;P49757 G3V3Z8 NUMB Protein numb homolog 1 0 T(0.006)NPS(0.51)PT(0.48)NPFS(0.003)S(0.001)DLQK 101.3 0.0052857 15050000 2260 1889.8 2166.2 2225.2 2383.6 2476.1 2011 1976.7 2191.2 2188.4 TRUE FALSE FALSE 1995.086226 1948.022498 2283.311324 2315.953274 2207.766577 2428.872518 2088.564944 2201.719538 2100.877809 2175.383299 0.9171194 0.895484717 1.049613337 1.064618486 1.01488624 1.116526232 0.960090548 1.012106482 0.965750638 1 11.08705391 -6.73902376 24.99627312 0.954865078 1.036802086 0.480437293 0.0462332 191.7322335 213805.4311 0.008151619 0.011523318 1.82E-07 6.73902376 0.081937008 KQPAFPASYIPPS(ph)PPTPPVPVPPPTLPK ddPTM_HeLa_CUDC101_4h_R1 1 KQPAFPASYIPPSPPTPPVPVPPPTLPK 28 1 C9K0J5;Q70E73 C9K0J5 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 KQPAFPASY(0.002)IPPS(0.499)PPT(0.499)PPVPVPPPTLPK 74.206 3.19E-05 7753000 3022.2 2561.8 2317.8 2052.3 2706.1 2304.5 2216.4 2353.8 2604.6 2734.8 TRUE FALSE FALSE 2667.942297 2640.726022 2443.107279 2136.001665 2506.476394 2260.545502 2301.88729 2621.747078 2497.237286 2718.533288 0.981390336 0.971378954 0.898685806 0.785718415 0.921995844 0.831531294 0.846738681 0.964397636 0.918597281 1 11.40861278 -6.738649282 3.281755505 0.990464105 0.867408862 0.425702988 0.05130438 0.112110563 2.513650434 0.006938131 0.009740624 1.83E-07 6.738649282 -0.123055242 PIPQTPES(ph)AGNK ddPTM_HeLa_CUDC101_4h_R1 1 PIPQTPESAGNK 12 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 PIPQT(0.315)PES(0.685)AGNK 138.2 0.0062642 34708000 9300.6 6982.4 7095.2 7152.2 5495.7 5075.7 5560.7 4886 6349 9949.8 TRUE FALSE FALSE 8210.397767 7197.519468 7478.787974 7443.89763 5090.29316 4978.889479 5775.178062 5442.20249 6087.291533 9890.618147 0.830119781 0.727711793 0.756149703 0.752622083 0.514658749 0.503395178 0.583904664 0.550238864 0.615461182 1 13.27184497 -6.738463867 0.33004863 1.011731587 0.456259484 0.274851948 0.128280735 0.349448255 0.096185396 0.039745369 0.074300229 1.83E-07 6.738463867 -0.555472103 S(ph)LVPAAELLESR ddPTM_HeLa_CUDC101_4h_R1 2 SLVPAAELLESR 12 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 S(1)LVPAAELLESR;S(1)LVPAAELLESR ; 144.51 0.0010528 5774900 2314 1967.63 1844.87 1636.1 2249.7 2025.34 1761.45 1898.76 1662.97 2012.54 TRUE FALSE FALSE 2042.756428 2028.250348 1944.609253 1702.82723 2083.744113 1986.710014 1829.389717 2114.907163 1594.421673 2000.569323 1.02108755 1.013836574 0.972027928 0.851171319 1.04157556 0.993072318 0.914434554 1.057152651 0.796983966 1 10.96619491 -6.737039941 7.324438595 1.010539734 0.967538417 0 0.087395474 0.281750458 58.01010118 0.008298137 0.011597084 1.83E-07 6.737039941 -0.043001317 LLAVAATAPPDAPNREEVFDER ddPTM_HeLa_CUDC101_4h_R1 2 LLAVAATAPPDAPNREEVFDER 22 1 P18206-2;P18206 P18206-2 VCL Vinculin 0 0 ; ; 97.081 0.00027691 24993000 2671.8 2271.3 2249 2522.2 1495.3 1855.11 2023.7 2221.1 1811.48 2329.9 FALSE FALSE TRUE 2358.615654 2341.276061 2370.587743 2625.066218 1384.994698 1819.726868 2101.754787 2473.941046 1736.810028 2316.041651 1.018382227 1.01089549 1.02355143 1.133427897 0.598000773 0.785705588 0.907477111 1.068176406 0.749904488 1 11.17744548 -5.792897335 24.99999915 1.018103136 0.840803828 0.192873644 0.142749008 159.8273829 127016.2593 0.01677495 0.030409235 1.61E-06 5.792897335 -0.177299307 LLDAEDVDVPSPDEK ddPTM_HeLa_CUDC101_4h_R1 1 LLDAEDVDVPSPDEK 15 0 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;E9PNZ4;E9PLY0;E9PLY5;A0A5F9ZGX0;H3BPE1;H3BQK9 A0A590UJG2;H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 0 0 177.16 1.42E-06 5443600 2599.6 2158.2 2346.8 2018 2498.2 2321 2219.1 2297.6 2456.4 2525.8 FALSE FALSE TRUE 2294.878829 2224.691584 2473.675107 2100.302763 2313.912763 2276.730792 2304.69143 2559.149497 2355.146152 2510.776429 0.914011619 0.88605722 0.985223168 0.836515246 0.921592515 0.906783561 0.917919813 1.019266179 0.93801508 1 11.29391785 -9.177017645 0.857610123 1.00153994 0.920459369 0.060844345 0.050911882 0.629412466 0.811371122 0.032861609 0.008708532 6.65E-10 9.177017645 -0.081080571 LLDEDEIR ddPTM_HeLa_CUDC101_4h_R1 3 LLDEDEIR 8 0 O43719;Q5H919;Q5H918 O43719 HTATSF1 HIV Tat-specific factor 1 0 0 ;; ;; 171.38 8.73E-05 13142800 8882.5 7029.4 6611.7 6126.3 6820.6 7247.7 6581.1 5666.6 7601.1 7326.3 FALSE FALSE TRUE 7841.306815 7245.967482 6969.148501 6376.156994 6317.457927 7109.462198 6834.935232 6311.662839 7287.779441 7282.722842 1.076699881 0.994953074 0.956942706 0.875518282 0.867458238 0.976209359 0.93851371 0.866662507 1.000694328 1 12.83026223 -6.729852335 2.446057188 1.03589936 0.909355029 0.647944958 0.038920978 0.131971992 1.620431828 0.007166375 0.010245642 1.86E-07 6.729852335 -0.126544331 LLDEEEATDNDLR ddPTM_HeLa_CUDC101_4h_R1 4 LLDEEEATDNDLR 13 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 0 ;;; ;;; 267.07 6.25E-70 237328000 6074.44 5154.87 5272.02 4996.38 5297.25 5278.64 5019.07 4833.52 5666.81 5373.52 FALSE FALSE TRUE 5362.403351 5313.685435 5557.041348 5200.153973 4906.482421 5177.958737 5212.657211 5383.748379 5433.221693 5341.558064 1.003902473 0.994781929 1.040340905 0.973527557 0.918548926 0.969372358 0.975868304 1.007898503 1.017160467 1 12.3830449 -6.023891186 24.88251809 1.004005728 0.96577384 0.423415575 0.023903879 552.7768788 575713.5518 0.003473236 0.005782697 9.46E-07 6.023891186 -0.038231888 RS(ph)SLLSR ddPTM_HeLa_CUDC101_4h_R1 1 RSSLLSR 7 1 C9J417;O43521-11;O43521-10;O43521-14;O43521-19;O43521-4;O43521-8;O43521-12;O43521 C9J417 BCL2L11 Bcl-2-like protein 11 1 0 RS(0.833)S(0.167)LLSR 72.243 0.031173 4640600 1285.7 1101 1388 1535.8 1513.4 1363 1422.7 1320.6 1534.9 1406.7 TRUE FALSE FALSE 1134.992195 1134.920505 1463.039478 1598.436562 1401.759497 1337.003046 1477.574016 1470.931766 1471.630772 1398.332886 0.81167525 0.811623982 1.046274098 1.143101602 1.002450498 0.956140744 1.056668287 1.051918167 1.052418052 1 10.44949213 -6.73700838 24.95056029 0.901125663 1.042182842 0.342645766 0.082562281 183.5617063 187464.9573 0.014096548 0.019930014 1.83E-07 6.73700838 0.141057179 RIS(ph)QSQPVR ddPTM_HeLa_CUDC101_4h_R1 3 RISQSQPVR 9 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 RIS(0.5)QS(0.5)QPVR;RIS(0.5)QS(0.5)QPVR;RIS(0.5)QS(0.5)QPVR ;; 107.97 0.0059892 236519000 3050.18 2283.1 2912.82 3019.7 3114.8 3197.07 3117 2690.55 2423.85 2604.52 TRUE FALSE FALSE 2692.642524 2353.439605 3070.29586 3142.856418 2885.02741 3136.091216 3237.223734 2996.831336 2323.937877 2589.028199 1.040020547 0.90900501 1.185887377 1.213913552 1.114328307 1.211300525 1.250362485 1.157512049 0.897610106 1 11.33819496 -6.736877937 24.26141585 1.011184637 1.190446373 0.761302053 0.059809213 55.37956155 54702.86582 0.007395483 0.010455567 1.83E-07 6.736877937 0.179261736 AS(ph)SPEKAEEDR ddPTM_HeLa_CUDC101_4h_R1 1 ASSPEKAEEDR 11 1 Q8N3D4;H0YDZ9 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 AS(0.568)S(0.432)PEKAEEDR 79.089 0.023229 13436000 4765.9 2798.4 4763.2 4876 4040.3 3880.2 3358.9 2129.8 4459.7 5495.6 TRUE FALSE FALSE 4207.248427 2884.615387 5020.713 5074.864356 3742.255118 3806.19165 3488.453898 2372.247823 4275.869278 5462.911927 0.770147585 0.528036224 0.919054355 0.9289669 0.685029371 0.696733116 0.638570408 0.434246031 0.782708807 1 12.41545445 -6.736811977 0.067558629 1.518919555 7.82E-20 0.298239398 0.143067422 20.61284001 0.832881468 8.298835226 10.06693535 1.83E-07 6.736811977 -1.518919555 PMSISPPDFS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 PMSISPPDFSPK 12 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 PMSIS(0.001)PPDFS(0.999)PK 96.067 0.014892 8846800 1919.6 2073.4 1251.5 1399.2 1296 1018 1375.8 1403.3 1484.7 1919.5 TRUE FALSE FALSE 1694.587398 2137.278996 1319.159876 1456.265424 1200.396662 998.5833461 1428.865067 1563.046 1423.500038 1908.082729 0.888110024 1.120118622 0.691353606 0.763208745 0.629111434 0.523343842 0.748848593 0.81917098 0.746036855 1 10.89790801 -6.736702498 24.63538275 0.958658394 0.690437331 0.508530589 0.116157392 92.25051464 91871.71117 0.01561565 0.022077794 1.83E-07 6.736702498 -0.268221064 EAS(ph)PSTLNDK ddPTM_HeLa_CUDC101_4h_R1 2 EASPSTLNDK 10 0 P54253 P54253 ATXN1 Ataxin-1 1 0 EAS(0.659)PS(0.269)T(0.072)LNDK;EAS(0.81)PS(0.162)T(0.028)LNDK ; 116.74 0.0058482 92481000 10032.3 8069.4 8212.1 8553.9 8648.6 7709.3 7665 7147.7 8908.6 9684 TRUE FALSE FALSE 8856.329002 8318.008649 8656.070966 8902.765015 8010.610008 7562.257947 7960.641618 7961.365276 8541.383737 9626.399137 0.920004342 0.864083083 0.899201336 0.924828161 0.832150204 0.785574942 0.826959438 0.827034612 0.887287512 1 13.23278053 -6.735420054 0.168740354 1.061589023 0.718441314 0.426354782 0.045064162 1.487780254 0.16477136 0.11749456 0.181685843 1.84E-07 6.735420054 -0.343147709 LLDPEDISVDHPDEK ddPTM_HeLa_CUDC101_4h_R1 2 LLDPEDISVDHPDEK 15 0 A0A087WUZ3;Q01082;Q01082-2;F8W6C1;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ; ; 151.3 0.00018014 18551600 6887.3 6111.6 6304.2 5443.2 7971.3 7402.7 7070.3 7232.2 7541.4 9156.5 FALSE FALSE TRUE 6079.981134 6299.891152 6645.024121 5665.197224 7383.27308 7261.505831 7343.003839 8055.484414 7230.5403 9102.036731 0.66798029 0.692140818 0.730059032 0.62240984 0.811167137 0.797789115 0.806742936 0.885019985 0.794387071 1 13.15197369 -9.382764587 1.096735383 1.000585929 0.743939617 0.154396499 0.09610672 0.283880263 0.608617696 0.055847399 0.014217362 4.14E-10 9.382764587 -0.256646313 LLDPEDVDVPQPDEK ddPTM_HeLa_CUDC101_4h_R1 2 LLDPEDVDVPQPDEK 15 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 270.93 6.29E-85 340470000 19319.4 15909.8 15679.2 15351 17740.7 16874.3 16650.1 16197.7 17446 15579.5 FALSE FALSE TRUE 17054.80922 16399.96208 16526.86498 15977.08013 16432.00391 16552.45084 17292.29993 18041.58069 16726.8685 15486.83244 1.101245802 1.058961679 1.067155924 1.031655776 1.061030651 1.068808028 1.116580811 1.164962607 1.080070347 1 13.91875448 -13.52287875 0.241971023 0.499710951 1.094349887 0.039344517 0.042262517 34.77055547 0.455361641 8.319779814 0.024196856 3.00E-14 13.52287875 0.594638937 LPDS(ph)PALAK ddPTM_HeLa_CUDC101_4h_R1 2 LPDSPALAK 9 0 H0YDB2;E9PNJ4;G0XQ39;Q13586 H0YDB2 STIM1 Stromal interaction molecule 1 1 0 LPDS(1)PALAK;LPDS(1)PALAK ; 119.34 0.0058584 28204000 8571.2 6802.5 5756.9 6616.2 5014.9 5389.8 5028.2 4192 5588.2 9072.1 TRUE FALSE FALSE 7566.496929 7012.076962 6068.135428 6886.037234 4644.960818 5286.998545 5222.139358 4669.200335 5357.852031 9018.138746 0.839030885 0.77755257 0.672881134 0.763576324 0.51506868 0.586262719 0.579070638 0.517756542 0.594119494 1 13.13861399 -6.735285642 0.326841164 1.015763314 0.461623561 0.205950825 0.133340528 0.291777724 0.079002898 0.033034032 0.061843186 1.84E-07 6.735285642 -0.554139753 LLDQQNPDEDFS ddPTM_HeLa_CUDC101_4h_R1 2 LLDQQNPDEDFS 12 0 P46108 P46108 CRK Adapter molecule crk 0 0 ; ; 140.75 0.0067851 5108800 5270.2 5068.3 4354.1 4660.1 4995.3 4736.8 4864.8 4476.7 4763.9 5402.2 FALSE FALSE TRUE 4652.435145 5224.448316 4589.495816 4850.159021 4626.806671 4646.453432 5052.436966 4986.309433 4567.530026 5370.067474 0.866364374 0.972883179 0.854643976 0.903184 0.861591906 0.865250475 0.940851673 0.928537575 0.850553563 1 12.3907245 -9.420598509 0.981038594 1.004280943 0.896351344 0 0.05911352 0.384457779 0.617937799 0.030972287 0.006657719 3.80E-10 9.420598509 -0.107929599 APVPGT(ph)PDSLSSGSSR ddPTM_HeLa_CUDC101_4h_R1 3 APVPGTPDSLSSGSSR 16 0 A0A087WYB4;Q9UJZ1-2;Q9UJZ1 A0A087WYB4 STOML2 "Stomatin-like protein 2, mitochondrial" 1 0 APVPGT(0.67)PDS(0.073)LS(0.142)S(0.03)GS(0.042)S(0.042)R;APVPGT(0.962)PDS(0.038)LSSGSSR;APVPGT(0.999)PDS(0.001)LSSGSSR ;; 208.38 9.02E-23 179826000 7230.9 6444.4 5281.72 5451.5 6607.6 6042.35 5035.4 5070.02 5771.1 5975.5 TRUE FALSE FALSE 6383.304863 6642.944326 5567.26576 5673.835733 6120.170512 5927.102241 5229.617065 5647.170583 5533.212815 5939.95746 1.074638144 1.118348805 0.93725684 0.955198042 1.030339115 0.997835806 0.880413218 0.950708927 0.93152398 1 12.53623688 -6.734825233 24.999998 1.042463347 0.959956441 0.260952652 0.058518068 184.4764462 173287.488 0.008425474 0.011913439 1.84E-07 6.734825233 -0.082506906 YYS(ph)DS(ph)DDELTVEQR ddPTM_HeLa_CUDC101_4h_R1 1 YYSDSDDELTVEQR 14 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 2 0 Y(0.001)Y(0.001)S(0.997)DS(0.999)DDELT(0.001)VEQR 123.1 0.012278 16068000 3716.4 3399.9 3640.5 3532.1 4128.1 3848.6 3681.1 3308.8 4183.7 4045.7 TRUE FALSE FALSE 3280.769226 3504.646889 3837.316442 3676.154305 3823.578287 3775.194367 3823.08126 3685.460417 4011.246115 4021.635996 0.815779754 0.87144806 0.954168017 0.914094241 0.950751955 0.93872105 0.950628367 0.916408253 0.997416504 1 11.97356679 -6.734705218 24.95172702 0.907459476 0.9376596 0 0.052894436 651.0856304 607674.9702 0.01116533 0.015787565 1.84E-07 6.734705218 0.030200123 LLEAQIATGGIIDPEESHR ddPTM_HeLa_CUDC101_4h_R1 2 LLEAQIATGGIIDPEESHR 19 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 123.43 2.75E-06 0 2864.9 2517.9 2354.2 2154.4 2429.9 2377.6 2261.8 2219.5 2560.9 3646.7 FALSE FALSE TRUE 2529.080765 2595.473515 2481.475173 2242.265744 2250.651118 2332.251241 2349.038384 2472.158908 2455.338618 3625.009266 0.697675669 0.715990863 0.684543126 0.618554486 0.620867687 0.643378008 0.648008932 0.681973128 0.67733306 1 11.82376897 -9.162978619 0.429891562 1.088129023 0.638356097 0.032659813 0.103214707 0.24119353 0.062493092 0.048401358 0.008166749 6.87E-10 9.162978619 -0.449772926 LLEAQIATGGVIDPVHSHR ddPTM_HeLa_CUDC101_4h_R1 2 LLEAQIATGGVIDPVHSHR 19 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9;A0A075B730;P58107 Q15149;Q15149-3;Q15149-4;Q15149-9;A0A075B730;P58107 PLEC;EPPK1 Plectin;Epiplakin 0 0 ; ; 65.105 0.011659 2278770 1317.17 1190.82 983.44 1034.28 1110.06 1338.07 1149.73 1002.37 1205.69 1298.39 FALSE FALSE TRUE 1162.773329 1227.507753 1036.607741 1076.462409 1028.173085 1312.548544 1194.075471 1116.475749 1155.990948 1290.667119 0.900908772 0.951064558 0.803156543 0.834035665 0.79662143 1.016953578 0.925161456 0.865037726 0.89565383 1 10.33390124 -8.788383163 0.640219153 1.002387761 0.883802981 0.03972602 0.071047007 0.797207129 0.610450732 0.048898649 0.01570156 1.63E-09 8.788383163 -0.11858478 EEEPTGWEEPS(ph)PESIRR ddPTM_HeLa_CUDC101_4h_R1 1 EEEPTGWEEPSPESIRR 17 1 Q8NDV7-2;Q8NDV7-6;Q8NDV7-5;Q8NDV7;H7C269 Q8NDV7-2 TNRC6A Trinucleotide repeat-containing gene 6A protein 1 0 EEEPTGWEEPS(0.924)PES(0.076)IRR 79.88 0.0068464 3095000 1465.4 1288.1 1017.3 1045.7 1032.9 1103.2 1186.2 1174.4 1167 1134.9 TRUE FALSE FALSE 1293.628033 1327.784834 1072.298315 1088.348166 956.7050248 1082.158298 1231.952131 1308.088949 1118.895766 1128.149564 1.146681322 1.176958159 0.950493045 0.96471975 0.84803031 0.959233006 1.092011352 1.159499583 0.991797366 1 10.13974263 -6.734471553 24.99887506 1.079278499 0.990270707 0.153781226 0.095101462 335.1988531 310724.8542 0.016646759 0.023538533 1.84E-07 6.734471553 -0.089007792 LLEDGEDFNLGDALDSSNSMQTIQK ddPTM_HeLa_CUDC101_4h_R1 5 LLEDGEDFNLGDALDSSNSMQTIQK 25 0 P05783 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ;;;; ;;;; 208.69 6.24E-28 94490500 18426.2 17061.4 14596.2 14524.4 16664.9 16691.1 15289.9 15184.2 17350.9 17224.6 FALSE FALSE TRUE 16266.30877 17587.04151 15385.31472 15116.76781 15435.56353 16372.74508 15879.63656 16912.70795 16635.68856 17122.14731 0.9500157 1.027151629 0.898562221 0.882878037 0.901496947 0.956231995 0.92743254 0.987767927 0.971588917 1 14.06357602 -6.746811916 24.98674928 0.979543441 0.924143115 0.432291505 0.034027714 201.6731329 344498.6152 0.005776175 0.008148385 1.79E-07 6.746811916 -0.055400326 SAEPSPTVMSTS(ph)LGSNLSELDR ddPTM_HeLa_CUDC101_4h_R1 1 SAEPSPTVMSTSLGSNLSELDR 22 0 F5GZ78;A0A1B0GTU4;P49023;P49023-2;P49023-3;A0A1B0GU60;F5H836 F5GZ78 PXN Paxillin 1 0 SAEPSPTVMS(0.003)T(0.239)S(0.754)LGS(0.003)NLSELDR 128.52 2.13E-07 5881400 20186 19014 21833 20880 22974 23749 20886 20160 25186 24632 TRUE FALSE FALSE 17819.82768 19599.7988 23013.35802 21731.57665 21279.25379 23296.02739 21691.58002 22454.93291 24147.82242 24485.48777 0.72777099 0.800465933 0.939877459 0.887528844 0.869055744 0.951421822 0.885895361 0.917071088 0.986209572 1 14.57963932 -6.734252387 24.97341937 0.862531852 0.906656927 0.017319882 0.078506741 669.3897843 614886.405 0.016746964 0.023680332 1.84E-07 6.734252387 0.044125075 TEEGEIDYS(ph)AEEGENRR ddPTM_HeLa_CUDC101_4h_R1 1 TEEGEIDYSAEEGENRR 17 1 B7WPG3;V9GYK2;Q8WVV9-2;Q8WVV9-5;Q8WVV9;C9IYN3;Q8WVV9-3;Q8WVV9-4 B7WPG3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 1 0 TEEGEIDYS(1)AEEGENRR 92.474 0.0030724 7259700 2138.9 1909.1 2033 2072.3 2261.5 2063.3 2077 1912.2 1960.7 2214.5 TRUE FALSE FALSE 1888.181384 1967.917108 2142.910129 2156.817351 2094.673651 2023.94599 2157.110586 2129.877119 1879.879116 2201.328056 0.857746477 0.893968122 0.973462417 0.979780068 0.951549972 0.919420431 0.979913276 0.967541895 0.853974995 1 11.10415845 -6.733990353 24.92009283 0.928033509 0.961166726 0.234033539 0.044146929 465.5478161 422654.7663 0.008990351 0.012712748 1.85E-07 6.733990353 0.033133217 AESSSGGGTVPSSAGILEQGPSPGDGS(ph)PPKPK ddPTM_HeLa_CUDC101_4h_R1 2 AESSSGGGTVPSSAGILEQGPSPGDGSPPKPK 32 1 Q68EM7-7;Q68EM7-3;Q68EM7-6;Q68EM7-5;Q68EM7 Q68EM7-7 ARHGAP17 Rho GTPase-activating protein 17 1 0 AESSSGGGTVPSSAGILEQGPS(0.061)PGDGS(0.939)PPKPK;AESSSGGGTVPSSAGILEQGPS(0.295)PGDGS(0.705)PPKPK ; 85.191 4.64E-08 631970000 5443.2 4583.2 4498.1 4359.1 4216.4 4551.2 3963.8 4053 4811.1 5128.5 TRUE FALSE FALSE 4805.156347 4724.40296 4741.280892 4536.88294 3905.364572 4464.393443 4116.685094 4514.377137 4612.784422 5097.995454 0.94255799 0.926717766 0.930028466 0.889934677 0.766058857 0.875715462 0.807510546 0.88552004 0.904823173 1 12.31571437 -6.733498404 0.605381037 0.98509344 0.829452272 0.490409671 0.045339267 0.288096957 0.219600019 0.009897018 0.017777052 1.85E-07 6.733498404 -0.155641168 LLEELEEGQK ddPTM_HeLa_CUDC101_4h_R1 2 LLEELEEGQK 10 0 E5RIF1;D6RG00;H0YBX6;I3L0A0;Q13404-8;Q15819;Q13404;Q13404-7;Q13404-2;Q13404-1 E5RIF1 UBE2V2;UBE2V1;TMEM189-UBE2V1 Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2 0 0 ; ; 196.88 5.02E-16 25589000 4957.4 4116.9 3644 4147.5 3933.9 3912.7 4118.1 3543.6 4491.1 4757.4 FALSE FALSE TRUE 4376.301087 4243.736809 3841.005662 4316.652977 3643.704034 3838.071767 4276.936496 3946.9891 4305.974957 4729.102773 0.925397754 0.897366163 0.812206003 0.912784768 0.770485272 0.811585612 0.904386456 0.834616901 0.91052683 1 12.20735078 -7.597239599 0.635142595 0.989609374 0.836567428 0.445874156 0.048614837 0.272771889 0.247772874 0.014208713 0.01312947 2.53E-08 7.597239599 -0.153041945 QITT(ph)SPITVR ddPTM_HeLa_CUDC101_4h_R1 1 QITTSPITVR 10 0 O95835;O95835-2 O95835 LATS1 Serine/threonine-protein kinase LATS1 1 0 QIT(0.041)T(0.78)S(0.178)PITVR 134.49 0.008784 98393000 4004.7 3912.1 3091.2 3036.1 3674.9 3335.8 3340.5 2986.3 3460.7 3846.2 TRUE FALSE FALSE 3535.275137 4032.627164 3258.319622 3159.925281 3403.809948 3272.175173 3469.344204 3326.248321 3318.048481 3823.322631 0.924660427 1.054744146 0.85222199 0.826486694 0.890275364 0.855845946 0.90741602 0.869988918 0.867844229 1 11.90061123 -6.733008624 24.99988874 0.97020302 0.867578547 0.462162651 0.049755935 111.4450679 97996.28143 0.006579469 0.009303761 1.85E-07 6.733008624 -0.102624472 LLEESNMELEERR ddPTM_HeLa_CUDC101_4h_R1 2 LLEESNMELEERR 13 1 H7C2F6;J3KPF9;A0A087X011;E9PES4;Q9Y496 H7C2F6 KIF3A Kinesin-like protein;Kinesin-like protein KIF3A 0 0 ; ; 90.697 0.018112 14073700 5417 4101.9 4095.2 4178.4 4199.3 4576.6 3858.2 3093.3 4920.1 4874.5 FALSE FALSE TRUE 4782.027472 4228.274677 4316.598899 4348.813213 3889.526005 4489.30898 4007.012066 3445.428768 4717.291396 4845.506257 0.986899452 0.872617731 0.8908458 0.897494087 0.80270787 0.926489151 0.826954265 0.71105651 0.973539429 1 12.24243169 -1.439340085 0.17427752 1.035435433 1.98E-09 0.690983348 0.047742502 18.33173465 0.223909127 0.068685259 4.856980357 0.036363018 1.439340085 -1.035435431 LLEGEEER ddPTM_HeLa_CUDC101_4h_R1 2 LLEGEEER 8 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8;P20700;E9PBF6;Q03252 P02545;P02545-2;P20700;Q03252 LMNA;LMNB1;LMNB2 Prelamin-A/C;Lamin-A/C;Lamin-B1;Lamin-B2 0 0 ; ; 172.15 8.02E-05 334220000 7827.2 7059.9 6977.6 6140.3 7656.7 6574.9 6616.9 6534.7 7384.2 7093.1 FALSE FALSE TRUE 6909.707481 7277.407151 7354.830162 6390.727975 7091.880495 6449.494737 6872.11605 7278.583834 7079.820151 7050.909926 0.979973869 1.03212312 1.04310369 0.906369255 1.005810678 0.91470389 0.974642439 1.032290004 1.004100212 1 12.78359374 -6.279183297 24.99433026 0.997666661 0.966478092 0.20458045 0.039812311 1281.051041 1804503.813 0.005944716 0.009092206 5.26E-07 6.279183297 -0.031188569 LLELFPSGNK ddPTM_HeLa_CUDC101_4h_R1 2 LLELFPSGNK 10 0 K7EP60 K7EP60 C19orf57 0 0 ; ; 132.08 0.0024503 5748000 3880.3 3695.8 3022.8 3768.5 4257.1 3658.1 3459.5 3229.9 3233.9 3622.5 FALSE FALSE TRUE 3425.457116 3809.663217 3186.221711 3922.195719 3943.062214 3588.327837 3592.934074 3597.57876 3100.597273 3600.953209 0.95126399 1.057959656 0.884827302 1.089210409 1.095005124 0.996493881 0.997773052 0.999062901 0.861049032 1 11.81416314 -6.233542728 24.99964968 0.9774789 1.034550443 0.261432626 0.063651033 869.988348 779642.4502 0.007753883 0.012856253 5.84E-07 6.233542728 0.057071543 (ac)T(ph)TPNKTPPGADPK ddPTM_HeLa_CUDC101_4h_R1 1 TTPNKTPPGADPK 13 1 D6RB36;D6R9Q5;A0A3B3ISY7;A0A286YEY6;D6RD74;D6RA92;Q9UM13 D6RB36 ANAPC10 Anaphase-promoting complex subunit 10 1 0 T(0.446)T(0.446)PNKT(0.109)PPGADPK 64.224 0.0084744 9169200 6322.1 4893.9 5656.6 6281 6109.4 6385.7 5105.8 5165.3 5479 5369.8 TRUE FALSE FALSE 5581.033022 5044.675258 5962.412906 6537.166329 5658.721734 6263.903412 5302.732416 5753.296873 5253.153301 5337.860191 1.045556238 0.945074445 1.117004323 1.224679196 1.060110518 1.173485852 0.993419128 1.077828318 0.984130928 1 12.3820458 -6.732462474 24.98783881 1.016380882 1.108694435 0.412306577 0.064471056 183.5674646 158296.5278 0.009925143 0.014035038 1.85E-07 6.732462474 0.092313552 VEEASPGRPS(ph)SVDTLLSPTALIDSILR ddPTM_HeLa_CUDC101_4h_R1 1 VEEASPGRPSSVDTLLSPTALIDSILR 27 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 1 0 VEEAS(0.289)PGRPS(0.345)S(0.345)VDT(0.011)LLS(0.006)PT(0.003)ALIDSILR 66.587 0.00052326 319510000 397.22 343.41 292.23 292.07 336.8 263.41 272.26 346 488.36 342.26 TRUE FALSE FALSE 350.6584737 353.9900551 308.0288377 303.981877 311.954935 258.3858931 282.7611594 385.3872414 468.2295941 340.2242223 1.03066875 1.04046106 0.905370099 0.893475118 0.916909833 0.759457664 0.831102376 1.132744867 1.376238267 1 8.410342047 -6.732120697 8.784870269 1.016832076 0.896090009 0.235102303 0.14478468 0.239930971 64.81482822 0.013619401 0.01913666 1.85E-07 6.732120697 -0.120742066 LLEQWEKDDDIEEGDLPEHK ddPTM_HeLa_CUDC101_4h_R1 2 LLEQWEKDDDIEEGDLPEHK 20 1 Q14696 Q14696 MESDC2 LDLR chaperone MESD 0 0 ; ; 119.23 1.46E-05 27145000 6639.2 5992.3 6045 6453.2 6206.1 6184.4 5738 5532.3 7047.5 7753.2 FALSE FALSE TRUE 5860.96304 6176.91566 6371.810985 6716.389389 5748.288367 6066.442874 5959.316582 6162.07467 6756.999067 7707.083622 0.760464441 0.801459536 0.826747353 0.871456665 0.745844816 0.787125607 0.773225889 0.799533906 0.876725802 1 12.91196933 -9.322872102 0.842254777 1.012197377 0.79403544 0.512725528 0.049950582 0.221713804 0.256296579 0.032507286 0.006940346 4.75E-10 9.322872102 -0.218161937 LLEQYK(ac)EESK ddPTM_HeLa_CUDC101_4h_R1 2 LLEQYKEESK 10 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;A0A1X7SBS1;Q5RI18;A0A1W2PQL0;A0A1W2PP34;A0A1W2PPL4;A0A1W2PPH7;A0A1W2PQD4 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 1 ; LLEQYK(1)EESK;LLEQYK(1)EESK 172.8 0.00076509 2066720 1470.52 576.74 517.67 399.25 1174.17 1268.23 1397.33 1142.51 1372.01 988.09 FALSE TRUE FALSE 1298.147875 594.5086758 545.6568061 415.5331407 1087.553818 1244.040626 1451.225486 1272.56872 1315.455167 982.2127967 1.321656447 0.605274822 0.555538278 0.423058162 1.107248676 1.266569352 1.477506189 1.295614071 1.339277162 1 9.939891809 -11.59927826 9.949445681 0.661579279 1.069022503 0 0.360043351 164775928.4 0 0 0.052920376 2.52E-12 11.59927826 0.407443223 NALFPEVFS(ph)PTPDENSDQNSR ddPTM_HeLa_CUDC101_4h_R1 4 NALFPEVFSPTPDENSDQNSR 21 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 NALFPEVFS(0.961)PT(0.039)PDENSDQNSR;NALFPEVFS(0.986)PT(0.014)PDENSDQNSR;NALFPEVFS(0.965)PT(0.035)PDENSDQNSR;NALFPEVFS(0.947)PT(0.053)PDENSDQNSR ;;; 148.17 3.98E-07 24272700 11476.5 10644.7 8329.19 8350.47 9104.6 8920.8 9184.05 7969.55 9709.14 9901.9 TRUE FALSE FALSE 10131.24207 10972.65059 8779.491206 8691.03826 8432.971797 8750.650603 9538.281885 8876.771358 9308.92514 9843.003058 1.029283645 1.114766553 0.891952502 0.882966124 0.856747859 0.889022441 0.969041849 0.90183568 0.945740348 1 13.26488283 -6.731240045 24.9723446 1.021785138 0.898748922 0.625255973 0.046972113 89.34283725 73878.92906 0.006665297 0.009425458 1.86E-07 6.731240045 -0.123036216 KASPEAAS(ph)TPRDPIDVDLPEEAER ddPTM_HeLa_CUDC101_4h_R1 2 KASPEAASTPRDPIDVDLPEEAER 24 2 P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-4;H3BVD2;H3BT29;P29590-2 P29590;P29590-2 PML Protein PML 1 0 KAS(0.386)PEAAS(0.499)T(0.115)PRDPIDVDLPEEAER;KAS(0.044)PEAAS(0.552)T(0.405)PRDPIDVDLPEEAER ; 85.397 5.48E-05 134498000 3447.3 3047.1 3341.2 3238.8 4073.4 3571.3 3269.6 3385.5 3742.8 3387.4 TRUE FALSE FALSE 3043.21272 3140.977539 3521.835379 3370.892263 3772.913397 3503.183403 3395.709567 3770.891635 3588.5202 3367.251594 0.903767549 0.93280156 1.045907999 1.001081199 1.120472674 1.040368771 1.008451395 1.119872255 1.065711931 1 11.71735581 -6.730993548 8.256040908 0.951657206 1.05379187 0.293141731 0.056463036 0.146442261 34.12366169 0.007949999 0.011166943 1.86E-07 6.730993548 0.102134664 LPSGSGAAS(ph)PTGSAVDIR ddPTM_HeLa_CUDC101_4h_R1 5 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LPSGSGAAS(0.985)PT(0.013)GS(0.002)AVDIR;LPS(0.005)GS(0.002)GAAS(0.922)PT(0.07)GS(0.002)AVDIR;LPSGSGAAS(0.989)PT(0.011)GSAVDIR;LPSGSGAAS(0.987)PT(0.012)GSAVDIR;LPSGS(0.001)GAAS(0.778)PT(0.216)GS(0.005)AVDIR ;;;; 189.44 1.68E-11 6705026000 4009.21 3736.41 3159.9 3179.45 3508.77 3301.18 3375.85 3180.01 3723.54 3704.79 TRUE FALSE FALSE 3539.256481 3851.524363 3330.733752 3309.121714 3249.935028 3238.215492 3506.057665 3542.009484 3570.054105 3682.753744 0.961035336 1.045827289 0.904413921 0.898545475 0.882474163 0.879291888 0.952020664 0.961782875 0.969397998 1 11.84656922 -6.730541075 24.99961469 0.985902957 0.911269017 0.585169711 0.033095892 120.507732 97501.77146 0.005482919 0.007753563 1.86E-07 6.730541075 -0.07463394 LLETQEQEIEDGR ddPTM_HeLa_CUDC101_4h_R1 1 LLETQEQEIEDGR 13 0 C9JKA9;Q9NS87-2;Q9NS87;Q9NS87-3;Q9NS87-4 C9JKA9 KIF15 Kinesin-like protein KIF15 0 0 158.25 0.00041074 2393200 606.16 535.72 714.53 683.09 616.03 578.93 596.96 606.9 571.44 715.78 FALSE FALSE TRUE 535.1068437 552.2248982 753.1596531 710.9493628 570.5866942 567.8878748 619.9849472 675.9870428 547.8850013 711.5225087 0.752058912 0.776117258 1.05851838 0.99919448 0.801923604 0.798130583 0.871349732 0.950057144 0.770017806 1 9.474765586 -9.669992524 1.545339518 0.999547663 0.857667094 0 0.119729581 0.530643869 2.292898138 0.075718073 0.017188327 2.14E-10 9.669992524 -0.141880569 LLETTDRPDGHQNNLR ddPTM_HeLa_CUDC101_4h_R1 2 LLETTDRPDGHQNNLR 16 1 Q14974;Q14974-2;J3KTM9 Q14974 KPNB1 Importin subunit beta-1 0 0 ; ; 135.81 0.00022594 58838000 7193.7 6030 5430.6 5514 6461.9 5314.6 5770.8 5103.1 5874.7 4869.6 FALSE FALSE TRUE 6350.465391 6215.777153 5724.194663 5738.884754 5985.218511 5213.23286 5993.381689 5684.016277 5632.542379 4840.635403 1.311907397 1.284082901 1.182529603 1.185564348 1.236453071 1.076972841 1.238139457 1.174229374 1.163595667 1 12.24098072 -9.477106622 1.228117466 1.000473663 1.219775622 0.206793122 0.07859117 0.257343116 0.696811755 0.047098611 0.011657123 3.33E-10 9.477106622 0.219301959 LLEYMPLPPEEAENGENAGNEEPK ddPTM_HeLa_CUDC101_4h_R1 1 LLEYMPLPPEEAENGENAGNEEPK 24 0 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5;Q9BZZ5-3 H0YER7 API5 Apoptosis inhibitor 5 0 0 52.03 0.0033248 0 1007.5 972.29 957.93 828.31 973.19 786.21 936.51 1077.8 1042.9 1105.4 FALSE FALSE TRUE 889.4023773 1002.245102 1009.718593 862.0920621 901.3997126 771.2143542 972.6315044 1200.492395 999.9112206 1098.825032 0.809412192 0.91210618 0.918907528 0.784558085 0.820330523 0.701853645 0.885155941 1.092523706 0.909982201 1 10.10174597 -9.427898569 1.046112105 1.00372945 0.855419601 0.078852727 0.10170942 0.677914888 1.272121375 0.077314324 0.017544734 3.73E-10 9.427898569 -0.148309849 S(ph)LDGLSEACGGAGSSGSAESGAGGGRR ddPTM_HeLa_CUDC101_4h_R1 1 SLDGLSEACGGAGSSGSAESGAGGGRR 27 1 Q96GS4 Q96GS4 C17orf59 Uncharacterized protein C17orf59 1 0 S(0.999)LDGLS(0.001)EACGGAGSSGSAESGAGGGRR 51.386 0.012617 7802700 823.28 698.67 801.73 808.99 762.02 897.66 784.39 763.43 770.69 837.11 TRUE FALSE FALSE 726.7763664 720.1951946 845.0739489 841.984109 705.8073028 880.5386311 814.6441851 850.3357853 738.921832 832.1308325 0.873391945 0.865483127 1.015554184 1.011841018 0.848192706 1.058173302 0.978985699 1.021877513 0.887987565 1 9.700666565 -6.730161943 24.99941312 0.932937555 0.986412085 0.24462687 0.064557559 344.8773593 275652.6562 0.011354162 0.016056312 1.86E-07 6.730161943 0.053474529 LLGHWEEAAHDLALACK ddPTM_HeLa_CUDC101_4h_R1 1 LLGHWEEAAHDLALACK 17 0 P50502;H7C3I1;Q8IZP2 P50502 ST13;ST13P4 Hsc70-interacting protein;Putative protein FAM10A4 0 0 87.824 0.006139 16294000 6502.8 5490.7 5238 5678.6 6090.6 6253.9 5244.7 5769.6 5772.9 3346.1 FALSE FALSE TRUE 5740.551642 5659.861959 5521.182124 5910.197853 5641.308572 6134.617277 5446.989836 6426.387942 5534.938619 3326.197248 1.725860258 1.701601419 1.659908211 1.77686331 1.696023462 1.844333579 1.637602773 1.93205257 1.664044013 1 11.69965801 -9.32771179 0.495944137 0.811920625 1.772162746 0.123537802 0.222528363 0.287554033 0.092417312 0.136849821 0.019519544 4.70E-10 9.32771179 0.960242121 NGYGFVEFEDS(ph)RDADDAVYELNGK ddPTM_HeLa_CUDC101_4h_R1 2 NGYGFVEFEDSRDADDAVYELNGK 24 1 Q13247-3;Q13247;A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80;Q13247-2 Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 1 0 NGY(0.001)GFVEFEDS(0.997)RDADDAVY(0.002)ELNGK;NGY(0.001)GFVEFEDS(0.998)RDADDAVY(0.001)ELNGK ; 72.676 0.00034676 18655700 1402.6 1235.9 1469.8 1499.09 1600.37 1593.27 1595.85 1466.24 1719.17 1379.81 TRUE FALSE FALSE 1238.189354 1273.976614 1549.261834 1560.22937 1482.313893 1562.881029 1657.402469 1633.150835 1648.305085 1371.602829 0.902731701 0.928823262 1.129526567 1.137522712 1.080716562 1.139455968 1.208369095 1.190687858 1.201736429 1 10.42164707 -6.729884027 6.660060889 0.950838117 1.147435221 0.298745388 0.088661143 0.061698587 8.412065622 0.008095278 0.011344231 1.86E-07 6.729884027 0.196597104 ATSTS(ph)TSGAGDVGK ddPTM_HeLa_CUDC101_4h_R1 1 ATSTSTSGAGDVGK 14 0 Q96T17;Q96T17-2;Q96T17-5;Q96T17-4 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 ATS(0.011)T(0.091)S(0.834)T(0.044)S(0.021)GAGDVGK 152 0.00018069 6254500 2210.2 1761.1 1974 1870 2268.6 2010.4 1834.3 2023.5 2022.6 1949.1 TRUE FALSE FALSE 1951.123706 1815.357404 2080.720411 1946.266683 2101.249898 1972.05497 1905.049565 2253.847061 1939.227572 1937.506667 1.007028125 0.936955436 1.073916517 1.004521283 1.084512345 1.017831321 0.983248005 1.1632719 1.000888206 1 10.91998556 -6.729794892 24.999886 0.998434266 1.048728046 0.285097193 0.051082035 235.165435 185785.8672 0.007352067 0.010396887 1.86E-07 6.729794892 0.05029378 DAT(ph)PPVSPINMEDQER ddPTM_HeLa_CUDC101_4h_R1 1 DATPPVSPINMEDQER 16 0 P17275 P17275 JUNB Transcription factor jun-B 1 0 DAT(1)PPVSPINMEDQER 197.7 1.27E-15 13372000 1721.8 1470.7 1213.5 1105.2 1218.6 1289 882.4 1438.1 1673.1 1614 TRUE FALSE FALSE 1519.973214 1516.010524 1279.105481 1150.274833 1128.706306 1264.414473 916.4344636 1601.807491 1604.13411 1604.399856 0.947378054 0.944908165 0.797248563 0.716950222 0.70350686 0.788091864 0.571200789 0.998384215 0.999834364 1 10.64781803 -6.729488065 2.611835714 0.974673057 0.744116161 0.516262614 0.100515239 0.144668275 2.025752851 0.014816244 0.021098609 1.86E-07 6.729488065 -0.230556897 LLGWIQNK ddPTM_HeLa_CUDC101_4h_R1 1 LLGWIQNK 8 0 P21333-2;P21333;Q60FE5;A0A087WWY3;F8WE98;O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;O75369-5;O75369-4;Q14315-2;Q14315 P21333-2;O75369-8;Q14315-2 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C 0 0 128.82 0.029637 134280 0 140.72 0 237.58 142.91 182.15 0 68.43 0 0 FALSE FALSE TRUE 0 145.0554164 0 247.2695393 132.367814 178.6757922 0 76.2197946 0 0 0 FET(ph)FQT(ph)IT(ph)SY(ph)IK ddPTM_HeLa_CUDC101_4h_R1 1 FETFQTITSYIK 12 0 O75691 O75691 UTP20 Small subunit processome component 20 homolog 4 0 FET(0.983)FQT(0.698)IT(0.698)S(0.624)Y(0.998)IK 61.11 0.0029692 0 789.7 521.32 542.26 455.5 458.81 613.91 508.08 503.8 642.81 505.11 TRUE FALSE FALSE 697.1325631 537.3812513 571.5762158 474.0772588 424.9645004 602.2006896 527.6768158 561.1505556 616.3130997 502.1055833 1.388418266 1.070255479 1.138358614 0.944178425 0.846364818 1.199350714 1.050927999 1.117594734 1.227457173 1 8.971846957 -6.728568598 2.463892543 1.182664373 1.035395052 0.206971838 0.129954091 0.445113227 5.545071089 0.028231244 0.040360403 1.87E-07 6.728568598 -0.147269321 PWLS(ph)STNDSPR ddPTM_HeLa_CUDC101_4h_R1 1 PWLSSTNDSPR 11 0 Q0D2K3 Q0D2K3 RIPPLY1 Protein ripply1 1 0 PWLS(0.9)S(0.1)TNDSPR 76.143 0.030474 12156000 4746 3853.7 3126.2 3220.6 3825.1 3453.5 3374.1 3291.5 3188.9 3128.3 TRUE FALSE FALSE 4189.681074 3972.427929 3295.211828 3351.949989 3542.929994 3387.630241 3504.240167 3666.191055 3057.452192 3109.692732 1.347297445 1.277434226 1.059658337 1.077903921 1.13931835 1.089377804 1.126876662 1.178956048 0.983200739 1 11.60255632 -6.72842141 24.99963184 1.177091538 1.111352308 0.010987784 0.108563863 513.1665943 388544.3138 0.021778218 0.030797946 1.87E-07 6.72842141 -0.06573923 LLHGEAVWDGTWHR ddPTM_HeLa_CUDC101_4h_R1 1 LLHGEAVWDGTWHR 14 0 H3BTY6;J3KRF6 H3BTY6 SPG7 0 0 74.46 0.034497 18643000 4609.4 3857.9 3859.6 3850.5 4473.7 3985.6 3594 4220.3 4103.9 3861.1 FALSE FALSE TRUE 4069.093119 3976.757326 4068.261651 4007.540033 4143.684064 3909.58132 3732.621784 4700.721893 3934.735505 3838.134005 1.060174844 1.036117374 1.05995821 1.044137601 1.079609013 1.018615117 0.9725095 1.224741472 1.025168871 1 11.90618937 -7.2975441 0.008688961 3.69E-08 2.087346589 0.158114327 0.059395039 1916.318775 14.48291069 1736.362011 1741.457725 5.04E-08 7.2975441 2.087346552 LLHHDDPEVLADTCWAISYLTDGPNER ddPTM_HeLa_CUDC101_4h_R1 1 LLHHDDPEVLADTCWAISYLTDGPNER 27 0 P52292 P52292 KPNA2 Importin subunit alpha-1 0 0 106.11 6.90E-08 9949300 725.1 830.72 671.21 927.68 832.04 781.29 569.65 613.61 871.8 597.39 FALSE FALSE TRUE 640.1048772 856.3134986 707.4976429 965.5148002 770.6620669 766.388195 591.6215913 683.4608821 835.864035 593.8366977 1.077913978 1.442001651 1.191401012 1.625892781 1.297767669 1.29057062 0.996269839 1.150923957 1.407565478 1 9.213922441 -7.4249444 6.328209986 1.033895445 1.283889332 0 0.198020412 0.206407957 11.15595804 0.028256816 0.032107646 3.76E-08 7.4249444 0.249993887 LLHIEELR ddPTM_HeLa_CUDC101_4h_R1 2 LLHIEELR 8 0 Q9Y224 Q9Y224 C14orf166 UPF0568 protein C14orf166 0 0 ; ; 190.52 1.82E-09 41295000 13001.1 11861.2 10698.4 11205.9 11817.9 10794.5 9796.5 10689.5 11365.1 10574.6 FALSE FALSE TRUE 11477.13077 12226.62951 11276.78786 11662.92504 10946.11706 10588.6129 10174.35429 11906.34947 10896.62577 10511.70181 1.09184326 1.16314463 1.072784224 1.109518254 1.041326824 1.007316711 0.96790743 1.132675725 1.036618615 1 13.35970864 -3.915156653 17.08276071 1.052158728 3.398829487 0.154667054 0.054586358 6138546.178 12426747.14 0.008531117 541675215.4 0.000121575 3.915156653 2.346670759 TTPESPPY(ph)SSGSYDSIKTEVSGCPEDLTVGR ddPTM_HeLa_CUDC101_4h_R1 1 TTPESPPYSSGSYDSIKTEVSGCPEDLTVGR 31 1 A0A087WTU5;A0A087X0N3;Q96MY1-2;Q96MY1 A0A087WTU5 NOL4L Nucleolar protein 4-like 1 0 T(0.006)T(0.006)PES(0.128)PPY(0.502)S(0.088)S(0.088)GS(0.088)Y(0.077)DS(0.017)IKTEVSGCPEDLTVGR 88.014 4.27E-07 18432000 925.26 1267.1 1108.7 903.15 1442.6 1365.7 1277.5 1517.7 1179.8 422.67 TRUE FALSE FALSE 816.8024254 1306.137849 1168.639676 939.9843607 1336.182272 1339.651548 1326.773603 1690.468833 1131.168145 420.15594 1.944045883 3.108697806 2.781442708 2.237227351 3.180205597 3.188462712 3.157812318 4.02343195 2.69225789 1 8.71478107 -6.727341515 0.159774775 8.02E-14 4.977837724 0.341613461 0.642490159 1.425749167 0.146989262 1.636915461 2.499032695 1.87E-07 6.727341515 4.977837724 ELIT(ph)ILEKT(ph)VS(ph)PDR ddPTM_HeLa_CUDC101_4h_R1 1 ELITILEKTVSPDR 14 1 Q14974;J3QR48 Q14974 KPNB1 Importin subunit beta-1 3 0 ELIT(1)ILEKT(1)VS(1)PDR 99.973 0.018545 7939500 2916.6 2789.5 2321.8 2290.7 2754.2 2718.5 2435.2 2293.7 2339.4 2766.6 TRUE FALSE FALSE 2574.720569 2875.441189 2447.323531 2384.124647 2551.028153 2666.649142 2529.12648 2554.805537 2242.968942 2750.14414 0.936212954 1.045560175 0.889889186 0.866908978 0.927597981 0.969639774 0.919634154 0.928971503 0.815582321 1 11.42529152 -6.727288537 24.99999089 0.974712915 0.917804803 0 0.062244734 169.7592177 124271.187 0.006424674 0.009085605 1.87E-07 6.727288537 -0.056908113 LLIDGDGAGDDRR ddPTM_HeLa_CUDC101_4h_R1 3 LLIDGDGAGDDRR 13 1 H7C5E3;Q6I9Y2 H7C5E3 THOC7 THO complex subunit 7 homolog 0 0 ;; ;; 191.33 1.43E-11 19312600 7094.6 7014.5 6933.9 7330.2 7649.8 7412.2 6815.6 7011 7643 7070 FALSE FALSE TRUE 6262.981743 7230.608431 7308.767608 7629.15724 7085.489495 7270.824635 7078.479975 7809.103901 7327.952305 7027.947326 0.891153768 1.028836458 1.039957653 1.085545592 1.008187621 1.034558783 1.007190243 1.111150033 1.042687426 1 12.77888766 -7.110123909 6.537407737 0.948711434 1.044374864 0.230353033 0.0487431 0.161073038 8.421232058 0.008038763 0.009875618 7.76E-08 7.110123909 0.09566343 DMS(ph)PLSETEMALGK ddPTM_HeLa_CUDC101_4h_R1 5 DMSPLSETEMALGK 14 0 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMS(1)PLSETEMALGK;DMS(0.96)PLS(0.038)ET(0.002)EMALGK;DMS(0.999)PLS(0.001)ETEMALGK;DMS(0.998)PLS(0.002)ETEMALGK;DMS(1)PLSETEMALGK ;;;; 264.58 2.32E-70 266474200 20363.3 17441.5 15270.53 14898.43 17044.6 18056.3 15403.96 15727.46 18527.63 16282.4 TRUE FALSE FALSE 17976.34484 17978.85194 16096.10104 15506.05237 15787.25382 17711.90616 15998.0959 17517.81047 17763.91325 16185.55156 1.110641474 1.110796371 0.994473434 0.958018163 0.975391772 1.094303527 0.988418333 1.082311617 1.097516707 1 13.98241891 -6.727196647 24.9990823 1.058098442 1.01340374 0.22711154 0.052206565 319.1072542 232965.1641 0.009509109 0.013447544 1.87E-07 6.727196647 -0.044694702 LLIYETEAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LLIYETEAKK 10 1 P49756 P49756 RBM25 RNA-binding protein 25 0 1 ; LLIYETEAK(1)K;LLIYETEAK(1)K 117.89 0.0034385 467540 136.75 77.271 135.11 0 247.66 151.31 149.92 145.39 284.41 73.814 FALSE TRUE FALSE 120.7203723 79.65162792 142.4144553 0 229.3906152 148.4240138 155.7024646 161.9406099 272.6864994 73.37495105 1.64525319 1.085542502 1.940913803 0 3.126279635 2.022815848 2.122011155 2.207028524 3.716343187 1 6.197215731 -1.000000001 0.166417832 0.996148032 6.562584079 0 1.078659322 64.26383635 0.666335003 1.075240177 89.02179496 0.1 1.000000001 5.566436047 SEPQPEEGS(ph)PAGGQK ddPTM_HeLa_CUDC101_4h_R1 1 SEPQPEEGSPAGGQK 15 0 F8WE91;Q9Y6K1;Q9Y6K1-3 F8WE91 DNMT3A DNA (cytosine-5)-methyltransferase 3A 1 0 SEPQPEEGS(1)PAGGQK 127.49 0.00074538 48250000 5091.6 4822.9 5196.5 5666.8 6627.3 5864.9 5767.3 4844.7 5751.2 4828.4 TRUE FALSE FALSE 4494.770366 4971.487832 5477.438509 5897.916598 6138.417282 5753.036804 5989.746693 5396.201065 5514.133102 4799.680462 0.936472834 1.035795585 1.141208993 1.228814427 1.278922072 1.198629127 1.247946971 1.124283399 1.148854209 1 12.22872265 -6.727070095 2.179338508 0.970252662 1.219197076 0.572663702 0.069839033 0.071517147 0.696594145 0.007185987 0.010367367 1.87E-07 6.727070095 0.248944413 ILPGSMIVS(ph)SDDTVDSTIDR ddPTM_HeLa_CUDC101_4h_R1 2 ILPGSMIVSSDDTVDSTIDR 20 0 Q9UK59-2;Q9UK59 Q9UK59-2 DBR1 Lariat debranching enzyme 1 0 ILPGS(0.001)MIVS(0.776)S(0.173)DDT(0.05)VDS(0.001)TIDR;ILPGSMIVS(0.716)S(0.212)DDT(0.042)VDS(0.007)T(0.023)IDR ; 90.422 0.0034055 7914500 1853.48 1827.39 1372.79 1507.22 1585.02 1468.16 1453.45 1223.33 1451.99 1724.34 TRUE FALSE FALSE 1636.217884 1883.68972 1447.00718 1568.690946 1468.096232 1440.157294 1509.510053 1362.588942 1392.138358 1714.083549 0.954573005 1.098948602 0.844187076 0.915177645 0.856490475 0.840190838 0.880651386 0.794937296 0.812176488 1 10.74322172 -6.726823328 24.99999994 0.986979032 0.85851877 0.346565645 0.072526514 83.37876138 60216.65376 0.007220346 0.010210848 1.88E-07 6.726823328 -0.128460263 LVPVS(ph)PLPPK ddPTM_HeLa_CUDC101_4h_R1 2 LVPVSPLPPK 10 0 O95396 O95396 MOCS3 Adenylyltransferase and sulfurtransferase MOCS3;Molybdopterin-synthase adenylyltransferase;Molybdopterin-synthase sulfurtransferase 1 0 LVPVS(1)PLPPK;LVPVS(1)PLPPK ; 124.42 0.0037565 70309000 10452.9 8731.8 9365.8 9167.9 10634.5 9150.9 9283.6 9214 9264.8 9700.4 TRUE FALSE FALSE 9227.626908 9000.816408 9872.143478 9541.806589 9850.014122 8976.361829 9641.671562 10262.88452 8882.901023 9642.701589 0.956954524 0.933433056 1.023794357 0.989536646 1.021499424 0.930896984 0.999893181 1.064316304 0.921204596 1 13.23522169 -6.726064837 24.99998227 0.975636946 1.001438026 0.218086202 0.03957608 329.4038636 232796.0973 0.005868904 0.008299688 1.88E-07 6.726064837 0.025801079 DIS(ph)LSDYK ddPTM_HeLa_CUDC101_4h_R1 2 DISLSDYK 8 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 1 0 DIS(0.976)LS(0.024)DYK;DIS(0.837)LS(0.163)DYK ; 96.015 0.022492 23486400 8786.7 7890.4 6178.4 6491.3 6759.2 7268.3 6557.8 5792.2 7871.7 7004.6 TRUE FALSE FALSE 7756.736346 8133.493872 6512.422993 6756.043272 6260.587282 7129.669287 6810.736543 6451.560635 7547.225194 6962.936328 1.11400363 1.168112631 0.935298369 0.970286522 0.899130336 1.023945783 0.978141437 0.926557465 1.083914148 1 12.76548012 -6.725995251 24.99993038 1.063910147 0.95779922 0.59824379 0.052651405 135.0289863 95240.17035 0.009888839 0.013984623 1.88E-07 6.725995251 -0.106110927 NEVNGTSEDIKSEGDTQS(ph)N ddPTM_HeLa_CUDC101_4h_R1 3 NEVNGTSEDIKSEGDTQSN 19 1 O95232 O95232 LUC7L3 Luc7-like protein 3 1 0 NEVNGTSEDIKS(0.002)EGDT(0.002)QS(0.996)N;NEVNGTSEDIKS(0.018)EGDT(0.043)QS(0.939)N;NEVNGTSEDIKSEGDT(0.01)QS(0.99)N ;; 176.44 3.91E-07 34937900 14328.6 11982.6 9933.7 9888 9815.9 10880.3 10102.5 8667.7 11640 12483.8 TRUE FALSE FALSE 12649.02323 12351.7697 10470.74587 10291.27538 9091.800613 10672.77641 10492.15681 9654.395932 11160.19427 12409.5458 1.01929784 0.995344221 0.84376544 0.829303146 0.732645719 0.860045692 0.8454908 0.777981409 0.899323348 1 13.59916269 -6.725955025 3.31879439 1.009458799 0.811398413 0.723389057 0.048510147 0.053900829 1.229421272 0.005383253 0.007586254 1.88E-07 6.725955025 -0.198060386 CY(ph)YGT(ph)GR ddPTM_HeLa_CUDC101_4h_R1 1 CYYGTGR 7 0 Q30KQ5 Q30KQ5 DEFB115 Beta-defensin 115 2 0 CY(0.999)Y(0.001)GT(1)GR 68.371 0.0033066 0 780.15 670.02 526.32 359.55 603.48 613.43 607.92 424.17 643.69 684.6 TRUE FALSE FALSE 688.7019996 690.662522 554.7744512 374.2140031 558.9624827 601.7298448 631.367678 472.4557982 617.1568258 680.5279688 1.012011308 1.014892192 0.815211831 0.549887764 0.821365922 0.884210308 0.927761543 0.694248907 0.906879444 1 9.410510645 -6.725209565 5.530096665 1.006727262 0.782889219 0.475885126 0.102676003 0.10850347 8.372829419 0.015780818 0.022117362 1.88E-07 6.725209565 -0.223838043 ESWVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 ESWVSPR 7 0 Q8IYH5-2;Q8IYH5;Q8IYH5-4 Q8IYH5-2 ZZZ3 ZZ-type zinc finger-containing protein 3 1 0 ESWVS(1)PR;ESWVS(1)PR ; 96.034 0.026501 36527000 8228.7 6995.9 6915.2 6095.3 6769.9 6022.2 5814.2 6548.6 8250 7901.5 TRUE FALSE FALSE 7264.14426 7211.435387 7289.056629 6343.89268 6270.497965 5907.336569 6038.455642 7294.066154 7909.931508 7854.501527 0.924838354 0.918127696 0.928010085 0.807676039 0.798331752 0.752095668 0.768789161 0.928647875 1.007057097 1 12.939304 -6.724536025 0.748399321 0.974756213 0.798745416 0.656572943 0.052151221 0.28164752 0.318760849 0.011833095 0.020207005 1.89E-07 6.724536025 -0.176010797 LLLETHLPSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LLLETHLPSKK 11 1 O00567;A0A494C128;Q5JXT2 O00567 NOP56 Nucleolar protein 56 0 1 ; LLLETHLPSK(1)K;LLLETHLPSK(1)K 69.672 0.021361 0 794.41 603.36 522.92 653.5 807.97 822.41 820.79 725.7 784.44 625.37 FALSE TRUE FALSE 701.290464 621.9488064 551.1906369 680.1525547 748.3676628 806.7238995 852.4481452 808.3107546 752.1050512 621.6502714 1.128110927 1.00048023 0.886657116 1.094108031 1.203840322 1.29771342 1.371266425 1.300266069 1.209852365 1 9.279959366 -5.562100364 2.115550201 1.043423432 1.330425104 0.690297912 0.082100013 0.122368631 1.093495602 0.011473154 0.028128429 2.74E-06 5.562100364 0.287001672 LLLIATGK ddPTM_HeLa_CUDC101_4h_R1 1 LLLIATGK 8 0 Q9NQW6;Q9NQW6-2;H7C1K5 Q9NQW6 ANLN Actin-binding protein anillin 0 0 101.33 0.035494 0 225.42 257.58 63.77 193.02 0 241.64 68.404 229.65 161.86 0 FALSE FALSE TRUE 198.9966093 265.5157345 67.21759909 200.8921899 0 237.0311196 71.04236519 255.7924277 155.1880623 0 0 LLLPGELAK ddPTM_HeLa_CUDC101_4h_R1 1 LLLPGELAK 9 0 O60814;P57053;P58876;P62807;Q16778;Q5QNW6;Q5QNW6-2;Q8N257;Q93079;U3KQK0;Q99877;Q99879;Q99880 O60814;P58876;P62807;Q16778;Q5QNW6;Q8N257;Q93079;U3KQK0;Q99879;Q99880 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST2H2BF;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 2-F;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 0 0 117.4 0.019526 3117300 3232.5 3058.6 2731.2 3140.9 3069 3091.4 2853 2801.3 2659 2005 FALSE FALSE TRUE 2853.59125 3152.831841 2878.856933 3268.999478 2842.605984 3032.436696 2963.041166 3120.188669 2549.394895 1993.074171 1.431753666 1.581893884 1.444430406 1.640179541 1.426241946 1.521487128 1.48666879 1.565515581 1.279126955 1 10.96077968 -8.836402489 0.563501391 0.961005957 1.530317948 0.640187335 0.104669493 0.203173796 0.114652863 0.05761489 0.015979085 1.46E-09 8.836402489 0.569311991 LLLPGELAK(ac)HAVSEGTK ddPTM_HeLa_CUDC101_4h_R1 1 LLLPGELAKHAVSEGTK 17 1 O60814;P57053;P58876;P62807;Q16778;Q5QNW6;Q5QNW6-2;Q8N257;Q93079;U3KQK0;Q99877;Q99879;Q99880 O60814;P58876;P62807;Q16778;Q5QNW6;Q8N257;Q93079;U3KQK0;Q99879;Q99880 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST2H2BF;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 2-F;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 0 1 LLLPGELAK(1)HAVSEGTK 91.789 0.018494 319640 197 0 0 0 145.42 135.25 0 0 0 0 FALSE TRUE FALSE 173.9079586 0 0 0 134.6926563 132.6703316 0 0 0 0 0 ELSNS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 3 ELSNSPLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ELS(0.002)NS(0.998)PLR;ELS(0.002)NS(0.998)PLR;ELS(0.001)NS(0.999)PLR ;; 131.09 0.0053945 1423511000 17753.2 13935.4 13103.7 12902.4 11931.4 11437.7 10936.4 11168.4 13904.7 17134.4 TRUE FALSE FALSE 15672.19681 14364.73316 13812.12566 13428.61564 11051.24439 11219.54493 11358.22061 12439.76551 13331.54238 17032.48383 0.920135722 0.843372775 0.810928447 0.788412059 0.6488334 0.658714551 0.666856386 0.73035534 0.782712757 1 14.05600122 -6.724262337 0.642546989 0.981730086 0.662743118 0.581840327 0.070842121 0.123006083 0.104501629 0.008805328 0.01568487 1.89E-07 6.724262337 -0.318986967 LS(ph)PTPSMQDGLDLPSETDLR ddPTM_HeLa_CUDC101_4h_R1 1 LSPTPSMQDGLDLPSETDLR 20 0 Q9UK58-6;Q9UK58;Q9UK58-5;Q9UK58-4 Q9UK58-6 CCNL1 Cyclin-L1 1 0 LS(0.992)PT(0.006)PSMQDGLDLPS(0.001)ETDLR 160.02 7.55E-06 8880900 2234.9 1737.2 1492.2 1282.2 1286.9 1501.4 1647.4 1084.2 1705.1 1891.7 TRUE FALSE FALSE 1972.92841 1790.721073 1572.872846 1334.493658 1191.967951 1472.763297 1710.94077 1207.620946 1634.815056 1880.448084 1.049179941 0.952284239 0.836435134 0.709667908 0.633874426 0.783198063 0.90985802 0.642198503 0.869375268 1 10.87686076 -6.723846796 2.267125049 1.02265231 0.743526896 0.583629937 0.088833069 0.108449782 1.143314302 0.012467559 0.017955691 1.89E-07 6.723846796 -0.279125414 RRPS(ph)GSEQSDNESVQSGR ddPTM_HeLa_CUDC101_4h_R1 1 RRPSGSEQSDNESVQSGR 18 2 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 RRPS(0.978)GS(0.022)EQSDNESVQSGR 75.017 0.011894 2084300 185.96 152.36 230.96 229.58 338.32 158.24 239.83 232.48 186.38 232.69 TRUE FALSE FALSE 164.1620507 157.054031 243.4463962 238.9432647 313.3628076 155.2218356 249.0803234 258.9445835 178.6973375 231.3059495 0.709718237 0.678988289 1.05248653 1.033018239 1.354754637 0.671067199 1.076843566 1.119489507 0.772558328 1 7.853658564 -6.723139872 24.81708381 0.845297318 1.048121219 0.322638412 0.178219987 182.5024994 118256.4015 0.03011713 0.042591543 1.89E-07 6.723139872 0.202823901 LLPAELPAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 LLPAELPAKR 10 1 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 1 LLPAELPAK(1)R 93.649 0.015647 2663500 1985.8 1152.9 1171 1407.6 2030.3 1409.6 2031.9 1209 472.68 693.71 FALSE TRUE FALSE 1753.027534 1188.419482 1234.307802 1465.008012 1880.528814 1382.714229 2110.271064 1346.627673 453.1959303 689.5837821 2.542153078 1.723386648 1.7899316 2.124481535 2.727049073 2.005143196 3.060209823 1.952812273 0.65720213 1 9.429582035 -9.462956241 0.765085816 0.831018955 2.275147414 0.637518204 0.42018038 0.524342184 0.440102025 0.504638975 0.079609906 3.44E-10 9.462956241 1.444128459 GS(ph)SPDVHALLEITEESDAVLVDK ddPTM_HeLa_CUDC101_4h_R1 1 GSSPDVHALLEITEESDAVLVDK 23 0 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 GS(0.5)S(0.5)PDVHALLEIT(0.001)EESDAVLVDK 79.69 0.00039552 0 1273.3 1373 610.6 653.33 980.77 862.94 681.28 492.17 1092.1 952.57 TRUE FALSE FALSE 1124.045704 1415.300503 643.610883 679.9756213 908.4205511 846.4808573 707.5571978 548.1966434 1047.083176 946.9040713 1.187074529 1.494660912 0.679700196 0.718104021 0.959358586 0.893945736 0.747232185 0.578935776 1.105796466 1 9.887074467 -6.722981751 24.99999971 1.121283517 0.775021233 0.623752337 0.160735829 104.2847414 67791.72913 0.027331548 0.038652228 1.89E-07 6.722981751 -0.346262284 ESDSAEGDEAES(ph)PEQQVR ddPTM_HeLa_CUDC101_4h_R1 2 ESDSAEGDEAESPEQQVR 18 0 Q8TEH3;Q8TEH3-7;Q8TEH3-6 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 0 ESDSAEGDEAES(1)PEQQVR;ESDSAEGDEAES(1)PEQQVR ; 259.14 2.02E-70 12880700 1647.34 1339.26 1216.59 1239.97 1079.39 1288.53 1290.84 1179.43 1225.23 1403.39 TRUE FALSE FALSE 1454.241302 1380.521013 1282.362535 1290.541336 999.7655501 1263.953437 1340.628131 1313.691544 1174.725501 1395.042574 1.042435069 0.989590597 0.919228244 0.925091005 0.716655942 0.90603216 0.960994421 0.941685629 0.842071434 1 10.44609344 -6.722346807 2.215375055 1.020109968 0.88667254 0.051932587 0.084792241 0.202606399 2.039142815 0.010997506 0.015874008 1.90E-07 6.722346807 -0.133437428 AS(ph)PNLIGATGANSLGK ddPTM_HeLa_CUDC101_4h_R1 1 ASPNLIGATGANSLGK 16 0 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 AS(1)PNLIGATGANSLGK 176.68 2.88E-07 33940000 1150.1 1012.5 790.28 680.61 870.45 968.59 786.99 506.58 849.56 1100.6 TRUE FALSE FALSE 1015.287021 1043.693925 833.0049273 708.3682176 806.2386377 950.1157595 817.3444679 564.2470195 814.5407772 1094.053582 0.928004842 0.953969661 0.761393172 0.647471229 0.736927926 0.868436222 0.747079011 0.51573984 0.744516348 1 10.09546768 -6.721047898 3.806476881 0.965155222 0.715546186 0.393499123 0.109932812 0.103197114 3.140753377 0.013954588 0.019620087 1.90E-07 6.721047898 -0.249609036 AGDGS(ph)SVKEVETYHR ddPTM_HeLa_CUDC101_4h_R1 2 AGDGSSVKEVETYHR 15 1 Q6PL18 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 0 AGDGS(0.5)S(0.5)VKEVETYHR;AGDGS(0.5)S(0.5)VKEVETYHR ; 80.905 0.0087079 26269000 7258.8 5402.8 7023.4 7157.3 7923.7 6922.6 6795.2 7538.2 6132.3 6564.1 TRUE FALSE FALSE 6407.934468 5569.253864 7403.106249 7449.20563 7339.184437 6790.562939 7057.29314 8396.318218 5879.523998 6525.056441 0.982050428 0.853518113 1.134565856 1.141630835 1.124769495 1.040690299 1.081568137 1.286780933 0.901068681 1 12.67177467 -6.72104356 24.99973243 0.980936522 1.128121746 0.601303025 0.07628794 92.86260138 57469.60089 0.01100863 0.015568451 1.90E-07 6.72104356 0.147185224 LLPQLTYLDGYDRDDK ddPTM_HeLa_CUDC101_4h_R1 2 LLPQLTYLDGYDRDDK 16 1 P39687;H0YN26 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 0 ; ; 122.12 0.00067217 33473000 4622 4798.3 3908.5 4649.3 5942.7 5384.3 5089.1 4245.4 6212.7 5993.6 FALSE FALSE TRUE 4080.216166 4946.129936 4119.805333 4838.91855 5504.318861 5281.603448 5285.388292 4728.679176 5956.609876 5957.949801 0.684835607 0.830173147 0.69148037 0.812178469 0.923861235 0.886480018 0.887115278 0.793675565 0.999775103 1 12.54060025 -3.975146103 14.84306005 0.842675646 0.679117523 0.015522715 0.104295674 1958390.642 32386051.63 0.017412501 7455769.675 0.00010589 3.975146103 -0.163558123 LHGGFDSDCS(ph)EDGEALNGEPELDLTSK ddPTM_HeLa_CUDC101_4h_R1 1 LHGGFDSDCSEDGEALNGEPELDLTSK 27 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 1 0 LHGGFDS(0.436)DCS(0.564)EDGEALNGEPELDLTSK 62.646 0.0015833 7221600 721.13 835.76 688.91 933.29 899.38 894.85 831.32 673.76 922.62 825.92 TRUE FALSE FALSE 636.6002346 861.508775 726.1545584 971.3536002 833.0345292 877.7822272 863.3842909 750.458115 884.5892131 821.0073911 0.775389164 1.049331327 0.884467748 1.183124063 1.014649245 1.069152649 1.051615735 0.914069865 1.077443666 1 9.6812514 -6.719720622 1.902178402 0.897767349 1.041138744 0 0.11203121 0.348842289 2.58193515 0.018773834 0.027464094 1.91E-07 6.719720622 0.143371395 EGVQGPLNVS(ph)LSEEGK ddPTM_HeLa_CUDC101_4h_R1 3 EGVQGPLNVSLSEEGK 16 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 EGVQGPLNVS(0.952)LS(0.048)EEGK;EGVQGPLNVS(1)LSEEGK;EGVQGPLNVS(0.968)LS(0.032)EEGK ;; 198.51 2.36E-16 103871000 11926.1 9453.6 9043.2 8594.5 8736.5 9130.1 8578.9 6750.6 10056.4 11076.9 TRUE FALSE FALSE 10528.14064 9744.854211 9532.102746 8945.020859 8092.025801 8955.958554 8909.791047 7519.061017 9641.870936 11011.01411 0.956146322 0.885009693 0.865687997 0.812370302 0.734902864 0.813363644 0.809170796 0.682867259 0.875656942 1 13.42665973 -6.719652347 0.683708985 0.991363718 0.753142001 0.676288131 0.051232292 0.152959752 0.145844541 0.008358944 0.014688923 1.91E-07 6.719652347 -0.238221717 ELPSLSPAPDTGLS(ph)PSKR ddPTM_HeLa_CUDC101_4h_R1 3 ELPSLSPAPDTGLSPSKR 18 1 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;A0A0A0MSL0 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 ELPSLSPAPDT(0.02)GLS(0.675)PS(0.305)KR;ELPSLSPAPDT(0.008)GLS(0.987)PS(0.005)KR;ELPSLSPAPDT(0.001)GLS(0.736)PS(0.262)KR ;; 238.05 1.20E-43 92795000 6949.8 5837.6 5270.1 5013.8 5900.5 5579.9 4968.7 5165.6 5840.2 6070.9 TRUE FALSE FALSE 6135.154979 6017.449537 5555.017547 5218.284435 5465.23187 5473.472704 5160.344423 5753.631024 5599.464484 6034.790017 1.016631061 0.997126581 0.920498896 0.86470025 0.905620884 0.906986438 0.855099251 0.953410311 0.927864013 1 12.55908786 -6.718883246 3.436301028 1.007869433 0.89555361 0.549385534 0.035724452 0.064595632 1.57618398 0.003718507 0.00524592 1.91E-07 6.718883246 -0.112315823 AEGAATEEEGT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 AEGAATEEEGTPK 13 0 P80723;P80723-2;U3KQP0 P80723 BASP1 Brain acid soluble protein 1 1 0 AEGAAT(0.001)EEEGT(0.999)PK;AEGAATEEEGT(1)PK;AEGAATEEEGT(1)PK;AEGAAT(0.015)EEEGT(0.985)PK ;;; 173.59 1.98E-11 211699000 17390 13525 12791.7 13588.1 10576.2 12643.2 12748.7 13112.8 11828.6 14881.9 TRUE FALSE FALSE 15351.57056 13941.68922 13483.25799 14142.28145 9796.014797 12402.05203 13240.42163 14605.50815 11341.0201 14793.3818 1.03773233 0.942427459 0.911438519 0.955987052 0.662189007 0.838351379 0.895023316 0.987300155 0.76662796 1 13.85266427 -6.718208735 1.455898267 1.017483947 0.856407376 0 0.114150442 0.277741488 1.191374078 0.014630742 0.022015072 1.91E-07 6.718208735 -0.161076571 VLDTSSLTQSAPASPT(ph)NK ddPTM_HeLa_CUDC101_4h_R1 1 VLDTSSLTQSAPASPTNK 18 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 VLDTSSLTQSAPAS(0.108)PT(0.892)NK 105.25 0.0040524 129820000 1760.7 2995 2054.3 2778.7 4156.6 3504.8 3555.6 2078.6 3427.7 1903.1 TRUE FALSE FALSE 1554.313415 3087.2724 2165.361672 2892.027397 3849.975899 3437.951779 3692.740683 2315.219422 3286.408755 1891.780277 0.821614135 1.631940262 1.144615841 1.528733243 2.035107326 1.817310299 1.951992379 1.223831039 1.73720426 1 10.88552882 -6.718011284 1.058207073 0.917658283 1.758907319 0.091630879 0.378536145 0.220459965 0.493220366 0.051800689 0.08184332 1.91E-07 6.718011284 0.841249036 LLQDYFNGR ddPTM_HeLa_CUDC101_4h_R1 2 LLQDYFNGR 9 0 Q53FA3;P34931 Q53FA3 HSPA1L Heat shock 70 kDa protein 1-like 0 0 ; ; 137.9 0.011879 236080000 6368.9 5602.2 4664.3 5324 5549.1 5449.9 4904.6 5087.7 4951.6 3790.1 FALSE FALSE TRUE 5622.347197 5774.797142 4916.466167 5541.135732 5139.753948 5345.952238 5093.772065 5666.863203 4747.492952 3767.556317 1.49230608 1.532769959 1.304948288 1.470750605 1.364214232 1.418944214 1.352009535 1.504121698 1.260098736 1 11.87941336 -9.267145592 0.897831652 0.988360621 1.428455068 0.51921638 0.104136001 0.184158776 0.255469328 0.054912427 0.013500824 5.41E-10 9.267145592 0.440094446 FIRRPS(ph)T(ph)TICPSPIRVALES(ph)S(ph)SGLEQK ddPTM_HeLa_CUDC101_4h_R1 1 FIRRPSTTICPSPIRVALESSSGLEQK 27 3 E9PD91;A0A1B0GVU3;O75916-4;O75916-5;O75916 E9PD91 RGS9 Regulator of G-protein signaling 9 4 0 FIRRPS(0.892)T(0.502)T(0.502)ICPS(0.15)PIRVALES(0.871)S(0.541)S(0.541)GLEQK 43.888 0.0026516 0 390.98 452.22 559.58 472.6 618.35 684.08 571.04 584.99 577.66 400.59 TRUE FALSE FALSE 345.1499171 466.1523622 589.8325874 491.8746708 572.7355524 671.0323138 593.0652041 651.582897 553.8486103 398.2072729 0.866759451 1.170627444 1.481220027 1.23522272 1.438285012 1.685133245 1.489337952 1.6362908 1.390855085 1 8.63737576 -6.717562229 1.126480495 0.932392211 1.540359339 0.448751469 0.187919586 0.137152411 0.348233688 0.024003029 0.037502186 1.92E-07 6.717562229 0.607967128 SPSGPVKS(ph)PPLSPVGTTPVK ddPTM_HeLa_CUDC101_4h_R1 1 SPSGPVKSPPLSPVGTTPVK 20 1 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 1 0 S(0.001)PS(0.001)GPVKS(0.998)PPLSPVGTTPVK 78.837 0.0024703 23044000 1285.6 1432.2 937.84 1207.3 1083.1 1300.3 1002.6 1099.1 892.95 1309.3 TRUE FALSE FALSE 1134.903917 1476.324384 988.5424672 1256.538912 1003.201871 1275.498944 1041.270618 1224.217101 856.142223 1301.512225 0.871988672 1.13431465 0.759533755 0.96544534 0.770797117 0.980013033 0.800046744 0.940611296 0.657805748 1 10.34597315 -6.716105501 24.99995679 0.952469613 0.871165843 0 0.134827125 190.4834779 105044.0517 0.014774407 0.02089412 1.92E-07 6.716105501 -0.08130377 DELADEIANSS(ph)GK ddPTM_HeLa_CUDC101_4h_R1 2 DELADEIANSSGK 13 0 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 DELADEIANS(0.005)S(0.995)GK;DELADEIANS(0.136)S(0.864)GK ; 269.87 1.26E-85 28768000 15375.1 9915.1 9192.4 9323 7308.6 9681.1 8631 7550 11332.1 10067.5 TRUE FALSE FALSE 13572.85409 10220.57248 9689.368949 9703.232237 6769.459139 9496.449147 8963.900561 8409.461482 10864.98604 10007.61806 1.356252207 1.021279231 0.968199315 0.969584588 0.676430605 0.94892202 0.8957077 0.840305998 1.085671533 1 13.28881102 -6.715868511 1.96891237 1.16699785 0.865211161 0.514824617 0.11544217 0.221089456 1.754387952 0.025482302 0.037221926 1.92E-07 6.715868511 -0.301786689 ASS(ph)LDLNK ddPTM_HeLa_CUDC101_4h_R1 1 ASSLDLNK 8 0 Q8NFH8-3;Q8NFH8-2;Q8NFH8-4;Q8NFH8 Q8NFH8-3 REPS2 RalBP1-associated Eps domain-containing protein 2 1 0 AS(0.007)S(0.993)LDLNK 84.817 0.03617 17856000 3277.1 3177.6 2963.8 3128.4 3818.8 3645.5 3519.7 2642.2 3346.5 2941.5 TRUE FALSE FALSE 2892.963306 3275.49809 3124.031993 3255.989674 3537.094732 3575.968161 3655.456008 2942.977368 3208.555854 2924.003827 0.98938424 1.120209919 1.068408996 1.113538103 1.209675138 1.222969727 1.250154317 1.006488891 1.097315887 1 11.51372948 -6.714473007 0.995298158 0.993521923 1.177103803 0.301073958 0.075548891 0.255326871 0.505065779 0.012699648 0.020355072 1.93E-07 6.714473007 0.18358188 S(ph)PGALETPSAAGSQGNTASQGK ddPTM_HeLa_CUDC101_4h_R1 2 SPGALETPSAAGSQGNTASQGK 22 0 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5;C9JVY5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 S(1)PGALETPSAAGSQGNTASQGK;S(1)PGALETPSAAGSQGNTASQGK ; 219.99 3.82E-35 145642000 5042 4205 3800.4 3638 3566.2 3863.2 3794.5 3412.9 5107.3 4617.1 TRUE FALSE FALSE 4450.984403 4334.551066 4005.86112 3786.373365 3303.128531 3789.515897 3940.855136 3801.410741 4896.774932 4589.637284 0.969790013 0.944421269 0.872805599 0.824983137 0.719692718 0.825667839 0.858641956 0.828259513 1.066919809 1 12.16416443 -6.710092176 1.648190637 0.986401013 0.809353645 0.808495031 0.042693046 0.102696781 0.56777719 0.006324026 0.009417945 1.95E-07 6.710092176 -0.177047368 Y(ph)GIVDY(ph)MIEQSGPPSKEILTLK ddPTM_HeLa_CUDC101_4h_R1 1 YGIVDYMIEQSGPPSKEILTLK 22 1 A0A499FI48;P13667 A0A499FI48 PDIA4 Protein disulfide-isomerase A4 2 0 Y(0.988)GIVDY(0.963)MIEQS(0.039)GPPS(0.003)KEILT(0.007)LK 41.53 0.0033744 0 278.78 218.19 289.1 428.01 498.06 46.693 253.78 427.25 317 202.39 TRUE FALSE FALSE 246.101831 224.9121753 304.7296205 445.4660978 461.3191061 45.80240882 263.5683796 475.886413 303.9331258 201.1861753 1.223254186 1.117930568 1.514664813 2.214198352 2.292996054 0.22766181 1.310072023 2.365403151 1.51070582 1 7.652387362 -6.70757302 4.535435424 1.108369284 1.635638089 0.107857563 0.598171942 0.308319554 13.14643279 0.094660395 0.133376281 1.96E-07 6.70757302 0.527268805 VS(ph)PQDANPLMANGTLTR ddPTM_HeLa_CUDC101_4h_R1 1 VSPQDANPLMANGTLTR 17 0 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-4;O60716-6 O60716-5 CTNND1 Catenin delta-1 1 0 VS(0.999)PQDANPLMANGT(0.001)LT(0.001)R 67.994 0.028537 5669900 554.72 603.81 475.14 625.55 685.47 766.16 484.68 631.55 519.92 495.25 TRUE FALSE FALSE 489.6965625 622.4126704 500.8275056 651.0626329 634.9042437 751.5467745 503.37427 703.4430992 498.4886775 492.304231 0.994703136 1.264284626 1.017313023 1.322480271 1.289658312 1.526590119 1.022486175 1.428878841 1.012562245 1 8.943406328 -6.70724353 0.929149987 0.994288077 1.316265645 0.439844973 0.14336379 0.312986682 0.539878923 0.026366405 0.043097132 1.96E-07 6.70724353 0.321977568 HQPWQSPERPLS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 HQPWQSPERPLSR 13 1 E7ES68;G5E9D5;Q9BQ52;Q9BQ52-2;J3QRS2;V9GYU5;J3QL08;V9GYS7 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 1 0 HQPWQS(0.001)PERPLS(0.999)R 92.952 0.0081756 305460000 1267.8 1328.2 1029 1162.9 1019.6 1199.8 1119.4 887.16 1274.1 1325.5 TRUE FALSE FALSE 1119.190406 1369.120268 1084.630853 1210.328088 944.3861393 1176.915814 1162.575633 988.1507084 1221.581059 1317.615867 0.849405683 1.039089087 0.82317683 0.918574312 0.71673859 0.893216182 0.882332751 0.749953559 0.927114715 1 10.36371412 -6.706319087 24.99998378 0.93516459 0.834674296 0.382671014 0.075086418 92.92857095 42147.63886 0.012865557 0.01819464 1.97E-07 6.706319087 -0.100490294 RSASS(ph)GSS(ph)S(ph)LGPAR ddPTM_HeLa_CUDC101_4h_R1 1 RSASSGSSSLGPAR 14 1 H3BP82 H3BP82 RNPS1 3 0 RSAS(0.04)S(0.936)GS(0.374)S(0.825)S(0.825)LGPAR 69.65 0.023231 24012000 699.11 1126.8 740.29 854.91 1519.3 1492.8 1466.6 734.97 1320.4 514.77 TRUE FALSE FALSE 617.1613856 1161.515372 780.3123167 889.776925 1407.224266 1464.327327 1523.167253 818.6360139 1265.972553 511.7081251 1.206080879 2.269878697 1.5249168 1.738836812 2.750052611 2.861645644 2.976632925 1.599810466 2.474012999 1 8.999177331 -6.704828823 0.664309435 1.032177464 2.593257956 0.075836526 0.653747313 0.318729221 0.287605386 0.112042427 0.200766167 1.97E-07 6.704828823 1.561080492 RVS(ph)STWTTTTSATGLPTLEPAPVRR ddPTM_HeLa_CUDC101_4h_R1 1 RVSSTWTTTTSATGLPTLEPAPVRR 25 2 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 RVS(0.52)S(0.15)T(0.212)WT(0.063)T(0.027)T(0.027)T(0.001)SAT(0.001)GLPTLEPAPVRR 57.188 0.0060889 44927000 187.38 240.94 113.65 120.42 178.6 140.82 121.64 124.56 157.96 196.62 TRUE FALSE FALSE 165.4156004 248.3630758 119.7942628 125.3312481 165.4250338 138.1340931 126.3316955 138.7394069 151.4488219 195.4504955 0.846329911 1.270721137 0.612913579 0.641242928 0.846378176 0.706747214 0.646361603 0.709844232 0.774870494 1 7.610659432 -6.704814911 24.99999611 0.95115562 0.696872201 0.504171782 0.134865413 52.87151738 23342.7891 0.019662105 0.027806408 1.97E-07 6.704814911 -0.254283419 EVSSRPS(ph)TPGLSVVSGISATSEDIPNKIEDLR ddPTM_HeLa_CUDC101_4h_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 EVS(0.142)S(0.142)RPS(0.329)T(0.329)PGLS(0.04)VVS(0.008)GIS(0.006)AT(0.003)S(0.001)EDIPNKIEDLR 49.09 0.0086124 104950000 1801.6 1494.6 1123.6 1138.4 1389.1 1263.4 1003.2 888.56 1516.4 1295.4 TRUE FALSE FALSE 1590.419179 1540.646854 1184.345215 1184.828873 1286.62886 1239.30275 1041.89376 989.7100787 1453.89335 1287.694903 1.235090063 1.196437798 0.919740547 0.920116147 0.999172131 0.962419551 0.809115387 0.768590507 1.129066634 1 10.3305751 -6.703021946 7.629790645 1.120426165 0.900362922 0.657194204 0.08572544 0.160572551 17.96384053 0.018005072 0.025435196 1.98E-07 6.703021946 -0.220063242 ALQEGEGDLSIS(ph)ADR ddPTM_HeLa_CUDC101_4h_R1 2 ALQEGEGDLSISADR 15 0 B4DKY1;P49589-2;P49589;P49589-3 B4DKY1 CARS "Cysteine--tRNA ligase, cytoplasmic" 1 0 ALQEGEGDLS(0.001)IS(0.999)ADR;ALQEGEGDLSIS(1)ADR ; 149.19 0.00023957 8500400 4010.2 3169.3 2904.8 2602.9 2651.1 2984 2936.1 2848.1 3638.8 3304.8 TRUE FALSE FALSE 3540.130435 3266.942376 3061.842275 2709.057513 2455.533635 2927.085172 3049.346361 3172.316192 3488.807124 3285.142903 1.077618399 0.994459746 0.932027119 0.824639169 0.747466307 0.891006954 0.928223353 0.965655463 1.061995544 1 11.68174041 -6.702717419 2.613694408 1.036242202 0.869573948 0.629307472 0.059021069 0.146370285 2.046712643 0.010789443 0.01550094 1.98E-07 6.702717419 -0.166668253 S(ph)IDQDYER ddPTM_HeLa_CUDC101_4h_R1 2 SIDQDYER 8 0 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 S(1)IDQDYER;S(1)IDQDYER ; 136.81 0.0048599 223500000 5839 4864.8 4344.5 4283.2 4518.2 4633.4 4331.8 4480.9 4898 4777.8 TRUE FALSE FALSE 5154.561271 5014.678722 4579.376811 4457.88741 4184.901388 4545.025615 4498.878977 4990.987544 4696.102367 4749.381433 1.085312128 1.055859335 0.964204892 0.938624845 0.881146618 0.956972119 0.947255772 1.050871069 0.988781894 1 12.21352391 -6.700976953 5.495231918 1.042571537 0.950943693 0.37941475 0.046741172 0.143405253 8.612576793 0.007924619 0.011183547 1.99E-07 6.700976953 -0.091627845 LLSAEFLEQHYDR ddPTM_HeLa_CUDC101_4h_R1 1 LLSAEFLEQHYDR 13 0 Q9Y376 Q9Y376 CAB39 Calcium-binding protein 39 0 0 143.94 0.00056727 7715500 1526.6 1394.4 1114 1463.4 1537.2 1645.5 1332.9 1301.5 1679.5 2123 FALSE FALSE TRUE 1347.654262 1437.359811 1174.22621 1523.083777 1423.803819 1614.114829 1384.310399 1449.657499 1610.270299 2110.372302 0.638586026 0.681093004 0.556407137 0.721713309 0.674669497 0.764848377 0.655955538 0.686920264 0.763026646 1 11.04328182 -9.221692455 0.832738731 1.012186121 0.67133975 0.376137685 0.087988898 0.195603953 0.230615523 0.043093723 0.010469271 6.00E-10 9.221692455 -0.340846371 LLSDATVEK(ac)DESHAGK ddPTM_HeLa_CUDC101_4h_R1 2 LLSDATVEKDESHAGK 16 1 Q14320 Q14320 FAM50A Protein FAM50A 0 1 ; LLSDATVEK(1)DESHAGK;LLSDATVEK(1)DESHAGK 108.14 0.0017198 0 632.61 205.76 133.17 374.2 596.2 534.21 682.38 613.87 622.86 434.49 FALSE TRUE FALSE 558.4564148 212.0992217 140.369573 389.4614934 552.2195138 524.0208343 708.6996252 683.7504795 597.1854472 431.9056342 1.293005626 0.491077691 0.32500056 0.901728208 1.278565201 1.213276218 1.640866822 1.583101551 1.382675751 1 8.754572326 -5.00892558 1.642859634 1.012619489 1.635835199 0.392091093 0.322164296 0.39945205 1.973725088 0.052737015 0.248870644 9.80E-06 5.00892558 0.62321571 PQSPVIQAAAVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 PQSPVIQAAAVSPK 14 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 PQSPVIQAAAVS(1)PK 122.31 0.0013235 18313000 1511.1 1159 752.43 1001.6 753.94 796.15 732.92 569.59 852.75 1348.1 TRUE FALSE FALSE 1333.971149 1194.707416 793.1086418 1042.449577 698.3233483 780.9647652 761.1889699 634.4298232 817.5992841 1340.081441 0.995440357 0.891518515 0.591836151 0.777900167 0.521105156 0.582774107 0.568016948 0.473426319 0.610111639 1 10.38810497 -6.699965794 1.037756292 1.006228226 0.550156124 0.397306008 0.146127745 0.107145836 0.230569662 0.013450323 0.021555474 2.00E-07 6.699965794 -0.456072102 DYQYS(ph)DQGIDY ddPTM_HeLa_CUDC101_4h_R1 1 DYQYSDQGIDY 11 0 Q15417-3;Q15417-2;Q15417 Q15417-3 CNN3 Calponin-3 1 0 DYQY(0.002)S(0.973)DQGIDY(0.025) 105 0.0089697 12554000 5207.1 4293.6 3479 3091.3 4030.3 3839.8 3709.5 2720.5 4011.9 4032.5 TRUE FALSE FALSE 4596.731631 4425.880727 3667.085263 3217.376576 3732.992798 3766.562213 3852.576658 3030.190723 3846.527784 4008.514511 1.146741921 1.104119921 0.914823996 0.802635632 0.931265881 0.939640409 0.961098344 0.755938569 0.959589338 1 11.96885198 -6.699525014 5.711080703 1.073796217 0.886888457 0.527879285 0.077195888 0.111641763 7.113915986 0.012538491 0.017701278 2.00E-07 6.699525014 -0.18690776 LLSISGK ddPTM_HeLa_CUDC101_4h_R1 2 LLSISGK 7 0 P06748;P06748-2;P06748-3;E5RI98 P06748 NPM1 Nucleophosmin 0 0 ; ; 130.77 0.022609 6961000 12444.9 9172.7 8597.3 8503.7 8777.9 9072.3 8175.5 8017.7 9816 8890 FALSE FALSE TRUE 10986.12769 9455.300015 9062.096043 8850.517642 8130.371805 8899.260993 8490.831774 8930.402559 9411.380325 8837.121885 1.243179378 1.069952428 1.025457854 1.001515851 0.920024858 1.0070316 0.960814152 1.010555549 1.064982519 1 13.10936087 -6.684370104 2.46516609 1.115795716 0.978923383 0.42074151 0.0626609 0.261446917 3.248982851 0.015294607 0.022197222 2.07E-07 6.684370104 -0.136872333 LLSISGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 LLSISGKR 8 1 P06748;P06748-2;P06748-3;E5RI98 P06748 NPM1 Nucleophosmin 0 1 ; LLSISGK(1)R;LLSISGK(1)R 151.04 0.0015463 79727000 9576.7 5965.1 3451.8 5912.5 5412.6 5863 5397.6 5108.7 4247.3 2337.23 FALSE TRUE FALSE 8454.133743 6148.877661 3638.414749 6153.637306 5013.323281 5751.173043 5605.78724 5690.253758 4072.224496 2323.328052 3.638803283 2.646581767 1.566035733 2.648630399 2.157819804 2.47540292 2.412826392 2.449182221 1.752754844 1 11.18197716 QTQSESS(ph)NYDSELEK ddPTM_HeLa_CUDC101_4h_R1 1 QTQSESSNYDSELEK 15 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 QTQSES(0.016)S(0.646)NYDS(0.338)ELEK 234.82 3.07E-43 7207400 4392.7 2982.9 3062.4 3043.6 2606.8 3073.7 2849.6 2344.9 2955.6 3515.5 TRUE FALSE FALSE 3877.794365 3074.799613 3227.962607 3167.731164 2414.501557 3015.074294 2959.510027 2611.833938 2833.768917 3494.58965 1.10965657 0.879874298 0.923702904 0.906467277 0.690925631 0.862783501 0.846883418 0.7473936 0.810901766 1 11.77090734 -6.698677196 1.235416979 1.049891194 0.804729711 0.190309025 0.102283222 0.184089141 0.5643027 0.01352877 0.021026152 2.00E-07 6.698677196 -0.245161483 S(ph)SPATSLFVELDEEEVK ddPTM_HeLa_CUDC101_4h_R1 1 SSPATSLFVELDEEEVK 17 0 A0A087WTL4;A0A087WX97;Q9BXK5-4;Q9BXK5 A0A087WTL4 BCL2L13 Bcl-2-like protein 13 1 0 S(0.5)S(0.5)PATSLFVELDEEEVK 325.08 9.35E-213 0 1658.3 1334.6 1137.7 975.99 1089.6 1078.2 972.19 737.81 1216.7 1604.6 TRUE FALSE FALSE 1463.916588 1375.717444 1199.207503 1015.795091 1009.222379 1057.635131 1009.687694 821.7993081 1166.547111 1595.055768 0.917783953 0.862488618 0.751827947 0.636839859 0.632719181 0.663070943 0.633010904 0.515216662 0.731351928 1 10.63939115 -6.698548634 0.758820732 0.978509809 0.591357145 0.635846212 0.086223627 0.093955358 0.109095378 0.008642866 0.014978045 2.00E-07 6.698548634 -0.387152664 GELVAS(ph)LEDAS(ph)LMGLYVDMNATTVT(ph)VQS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 GELVASLEDASLMGLYVDMNATTVTVQSPR 30 0 H3BM07;H0YBK5;G8JLG8;Q8N9H9-2;Q8N9H9 H3BM07 C1orf127 Uncharacterized protein C1orf127 4 0 GELVAS(0.982)LEDAS(0.934)LMGLY(0.084)VDMNAT(0.298)T(0.298)VT(0.666)VQS(0.738)PR 49.765 0.0089117 41383000 3148.4 3223.4 3125.3 3435.9 4065.1 3291.2 3375.7 3670.2 3882.8 3174.8 TRUE FALSE FALSE 2779.349325 3322.709133 3294.263172 3576.030853 3765.225672 3228.425844 3505.90188 4088.000733 3722.749341 3155.916148 0.880679078 1.052850892 1.043837357 1.13311973 1.193068984 1.022975799 1.110898299 1.295345168 1.179609713 1 11.62384316 -6.698499689 1.613340426 0.945150237 1.143866963 0.113291428 0.104442331 0.200786919 1.062401651 0.013691934 0.020541426 2.00E-07 6.698499689 0.198716726 AVT(ph)PSSEAKDSR ddPTM_HeLa_CUDC101_4h_R1 1 AVTPSSEAKDSR 12 1 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHH4;A0A5F9ZHX3;F8W0B5 Q99700 ATXN2 Ataxin-2 1 0 AVT(0.498)PS(0.498)S(0.003)EAKDSR 108.32 0.0019449 0 964.03 1107.2 1259.6 1118.4 2010.8 1276.7 1322.8 1651.2 1096.9 857.14 TRUE FALSE FALSE 851.0278648 1141.31152 1327.697786 1164.013186 1862.46729 1252.349075 1373.820839 1839.165934 1051.685318 852.0416932 0.998810119 1.339501962 1.558254481 1.366145807 2.185887504 1.469821353 1.61238687 2.158539832 1.234312037 1 9.734780218 -6.697987008 0.973057438 0.98612082 1.801298415 0.593019874 0.250018328 0.200361625 0.378951382 0.043555756 0.070849996 2.00E-07 6.697987008 0.815177594 T(ph)TPNSGDVQVTEDAVR ddPTM_HeLa_CUDC101_4h_R1 2 TTPNSGDVQVTEDAVR 16 0 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 1 0 T(0.726)T(0.274)PNSGDVQVTEDAVR;T(0.972)T(0.028)PNSGDVQVTEDAVR ; 203.87 3.02E-16 58400000 5524.8 4557.5 3970.1 3763.3 4177.4 4472.6 3847.9 3277.4 4684.4 4702.7 TRUE FALSE FALSE 4877.191319 4697.911173 4184.735615 3916.78364 3869.241525 4387.292607 3996.314792 3650.485968 4491.307049 4674.728131 1.043310152 1.004959228 0.895182671 0.837863407 0.827693379 0.93851289 0.854876408 0.780898026 0.960763262 1 12.19066675 -6.697740628 3.049236369 1.02082264 0.852932399 0.742620069 0.042442374 0.079811703 1.511423271 0.0064156 0.009152806 2.01E-07 6.697740628 -0.16789024 IDMDS(ph)KMK ddPTM_HeLa_CUDC101_4h_R1 1 IDMDSKMK 8 1 E9PMZ8;Q8IVF5;Q8IVF5-5;Q8IVF5-2 E9PMZ8 TIAM2 T-lymphoma invasion and metastasis-inducing protein 2 1 0 IDMDS(1)KMK 60.167 0.0027584 0 3526 5568.5 4948 5906.9 9057.3 8396.5 6944.1 5263.5 7882 3558.6 TRUE FALSE FALSE 3112.687625 5740.058885 5215.503847 6147.808914 8389.161024 8236.350752 7211.936263 5862.675564 7557.100624 3537.433289 0.87992829 1.622662087 1.474375181 1.737929287 2.371539005 2.328340941 2.038748345 1.6573247 2.136323149 1 11.78848723 -6.697522267 1.109558506 0.938959451 2.089978197 0.154677631 0.447355319 0.141219666 0.347889551 0.046192188 0.073172033 2.01E-07 6.697522267 1.151018745 LLSSGFDIDTPDDFGR ddPTM_HeLa_CUDC101_4h_R1 1 LLSSGFDIDTPDDFGR 16 0 B4DIW9;O15084-2;O15084;O15084-4;O15084-1 B4DIW9 ANKRD28 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A 0 0 104.94 0.014536 1507800 800.56 483.41 538.9 587.29 938.94 711.02 702.26 494.92 745.97 754.64 FALSE FALSE TRUE 706.7195704 498.3032891 568.0345641 611.2422247 869.6762668 697.4584781 729.3464034 551.2596923 715.2208009 750.1513677 0.942102622 0.66427032 0.757226593 0.814825182 1.159334375 0.929756991 0.972265645 0.73486461 0.953435309 1 9.551037926 -7.501400003 16.34351666 0.974463224 0.869194153 0.115442583 0.132324665 6.959754077 5297.506477 0.024307353 0.026261695 3.15E-08 7.501400003 -0.105269072 NIYAFMGT(ph)PVQK ddPTM_HeLa_CUDC101_4h_R1 2 NIYAFMGTPVQK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 NIYAFMGT(1)PVQK;NIYAFMGT(1)PVQK ; 186.56 4.38E-10 49867000 5169.2 4936.7 5320.7 4705.4 4750.3 4900.3 3937.2 1223.6 4325.4 6382.6 TRUE FALSE FALSE 4563.274212 5088.793876 5608.353136 4897.30655 4399.879833 4806.834942 4089.059123 1362.889678 4147.105181 6344.636011 0.719233413 0.802062383 0.883951912 0.771881404 0.69348026 0.757621861 0.644490734 0.21480975 0.653639574 1 12.63132168 -4.256616317 1.092734556 0.847611317 1.46E-51 0.703951554 0.106316442 0.754838065 0.704689584 0.018122379 0.739349864 5.54E-05 4.256616317 -0.847611317 down ETQVILLDTPGIIS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 2 ETQVILLDTPGIISPGK 17 0 J3QSB2;J3QRV9;O75616-2;O75616 J3QSB2 ERAL1 "GTPase Era, mitochondrial" 1 0 ETQVILLDT(0.004)PGIIS(0.996)PGK;ETQVILLDT(0.003)PGIIS(0.997)PGK ; 127.97 0.00027212 5653700 2706.2 2226.61 1960.41 1771.3 2075.98 2345.74 1617.19 1656.49 1835.24 2359.56 TRUE FALSE FALSE 2388.983338 2295.209215 2066.395695 1843.54127 1922.839091 2300.998918 1679.56556 1845.058126 1759.59063 2345.525232 1.018528092 0.978548081 0.880994869 0.78598228 0.81979041 0.981016485 0.716072263 0.786628982 0.75019045 1 11.19569531 -6.695608971 2.579424854 1.008484741 0.821543557 0.097192318 0.103098522 0.123441901 1.680112103 0.010122221 0.014589135 2.02E-07 6.695608971 -0.186941183 GLVAAYS(ph)GESDSEEEQER ddPTM_HeLa_CUDC101_4h_R1 1 GLVAAYSGESDSEEEQER 18 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 0 GLVAAY(0.009)S(0.398)GES(0.398)DS(0.195)EEEQER 69.379 0.019656 5657700 1285 1274.9 1356.5 1480.1 1443.1 1592.4 1408 1202.6 1660.5 1525.7 TRUE FALSE FALSE 1134.374248 1314.178158 1429.836493 1540.464876 1336.645388 1562.027623 1462.307032 1339.499123 1592.053487 1516.625069 0.747959579 0.866514859 0.942775194 1.015718985 0.881328824 1.029936571 0.964184927 0.883210459 1.049734387 1 10.56664876 -6.694905659 5.490154896 0.876600527 0.957388473 0 0.090515972 0.337033117 19.16019371 0.016221028 0.022915655 2.02E-07 6.694905659 0.080787947 ANS(ph)DIISLNFR ddPTM_HeLa_CUDC101_4h_R1 1 ANSDIISLNFR 11 0 Q8TC76 Q8TC76 FAM110B Protein FAM110B 1 0 ANS(0.998)DIIS(0.002)LNFR 81.128 0.037329 5074400 775.06 867.69 759.7 937.57 1121.8 943.38 921.02 791.42 747.67 798.1 TRUE FALSE FALSE 684.2086417 894.4225004 800.77168 975.8081571 1039.047049 925.3865983 956.5440499 881.5120538 716.8507261 793.3528657 0.862426634 1.127395563 1.009351216 1.229979999 1.309690926 1.166424977 1.205698109 1.111122291 0.903571106 1 9.631818877 -6.694560049 1.516091528 0.938517932 1.204573879 0.672607734 0.078872684 0.168498347 0.785135219 0.014887362 0.022536701 2.02E-07 6.694560049 0.266055947 SGAAS(ph)MPSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SGAASMPSSPK 11 0 Q86SQ0-2;Q86SQ0-3;Q86SQ0;G5E9V3;E9PFQ4;E9PDY7 Q86SQ0-2 PHLDB2 Pleckstrin homology-like domain family B member 2 2 0 S(0.001)GAAS(0.976)MPS(0.126)S(0.897)PK 70.54 0.0032614 0 1859.2 1369.6 1717.6 1341.6 1756.9 1519.1 1314.9 1369 1203.1 1773.1 TRUE FALSE FALSE 1641.267394 1411.795753 1810.458651 1396.316247 1627.296987 1490.125698 1365.616133 1524.841426 1153.507709 1762.553522 0.931187265 0.800994543 1.02717939 0.792212111 0.923261034 0.845435716 0.774794136 0.865131984 0.654452585 1 10.78345135 -6.694114978 0.141450421 1.08298382 0.711694937 0 0.128551357 4.730100909 0.411851609 0.400098815 0.598696909 2.02E-07 6.694114978 -0.371288883 LLTSQELQMQRQIRPKSQK ddPTM_HeLa_CUDC101_4h_R1 1 LLTSQELQMQRQIRPKSQK 19 3 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 0 0 42.095 0.036801 5627500 355.85 817.69 1679 2954.6 3084.5 2817.1 3018 2691.5 147.92 147.33 FALSE FALSE TRUE 314.1378024 842.8820597 1769.771819 3075.101359 2856.96258 2763.368511 3134.405271 2997.889481 141.822675 146.4536746 2.144963609 5.75528106 12.0841749 20.99709254 19.50761965 18.8685502 21.40202545 20.46988229 0.968379082 1 7.194300582 -6.646137703 1.605332041 1.490866923 20.40922814 0.9862893 0.995236478 0.026338548 0.137587313 0.168584186 0.258971 2.26E-07 6.646137703 18.91836121 AS(ph)DPGLPAEEPK ddPTM_HeLa_CUDC101_4h_R1 4 ASDPGLPAEEPK 12 0 P27708;F8VPD4 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK;AS(1)DPGLPAEEPK ;;; 201.09 1.88E-16 410306000 38144.3 24097.4 22705.9 23100 20038 24827.9 22105.8 14729 19038.9 24194.2 TRUE FALSE FALSE 33673.08298 24839.81233 23933.44964 24042.11785 18559.83666 24354.34917 22958.42811 16405.68982 18254.10848 24050.29182 1.400111201 1.032827897 0.995141756 0.99966013 0.771709416 1.012642564 0.954600812 0.682140988 0.75899738 1 14.55376678 -6.692647695 1.870416065 1.187252714 0.890309953 0 0.190198667 0.268180374 1.916206533 0.029473964 0.04365222 2.03E-07 6.692647695 -0.296942761 S(ph)RDAT(ph)PPVS(ph)PINMEDQER ddPTM_HeLa_CUDC101_4h_R1 1 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 3 0 S(1)RDAT(1)PPVS(1)PINMEDQER 101.38 0.00061461 0 917.82 917.25 648.82 589 720.18 579.46 731.01 837.27 792.75 807.8 TRUE FALSE FALSE 810.2345309 945.5093853 683.8971718 613.0219659 667.0537562 568.4077659 759.2053006 932.5814324 760.0725095 802.9951697 1.009015448 1.177478298 0.851682797 0.763419245 0.83070706 0.707859508 0.945466834 1.161378633 0.946546801 1 9.649247499 -6.692520884 24.99999867 1.017369829 0.864953657 0.260423022 0.127164954 53.25433178 19317.11207 0.019792071 0.027990212 2.03E-07 6.692520884 -0.152416172 LLVDVDESTLSPEEQKER ddPTM_HeLa_CUDC101_4h_R1 3 LLVDVDESTLSPEEQKER 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 0 ;; ;; 154.51 5.81E-05 17186200 4786.9 3917.7 3668.05 3744.64 4400.7 3689.3 3827.66 3913.62 4265 4235.4 FALSE FALSE TRUE 4225.786838 4038.399693 3866.355878 3897.362605 4076.069128 3618.932749 3975.294128 4359.130681 4089.194895 4210.207652 1.003700337 0.959192521 0.918329023 0.925693678 0.968139689 0.859561582 0.944203815 1.035371896 0.971257295 1 12.03967568 -7.13238989 3.570463076 1.001790502 0.938670675 0.200326167 0.04252498 0.207839595 4.834245219 0.006786883 0.008404754 7.37E-08 7.13238989 -0.063119827 LLVTDMSDAEQYR ddPTM_HeLa_CUDC101_4h_R1 2 LLVTDMSDAEQYR 13 0 O14929;O14929-2 O14929 HAT1 Histone acetyltransferase type B catalytic subunit 0 0 ; ; 159.79 0.00030649 13393100 2493.4 2424.2 2287.4 2181.2 3022.9 2662.2 2241.4 2137.89 2568 2644.1 FALSE FALSE TRUE 2201.127432 2498.886729 2411.063763 2270.158764 2799.906689 2611.422971 2327.851549 2381.258756 2462.145953 2628.372776 0.837448726 0.950735281 0.917321845 0.86371263 1.065262399 0.993551217 0.885662631 0.905982126 0.936756755 1 11.35995419 LMEEDELPSWIIKDDAEVER ddPTM_HeLa_CUDC101_4h_R1 1 LMEEDELPSWIIKDDAEVER 20 1 P51532-5;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;P51532;A0A2R8Y4C5;P51532-4;P51532-2;P51532-3;A0A2R8Y6V2;A0A2R8Y6N0;A0A2R8YG32;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y526;A0A2R8YDA1;A0A2R8Y7Y7;A0A2R8YF58;K7EQF0;A0A2R8Y5K3;A0A2R8Y523;A0A2R8YFK5;P51531;P51531-2;F6VDE0;A0A0U1RQZ9;A0A0U1RRG6 P51532-5;P51531 SMARCA4;SMARCA2 Transcription activator BRG1;Probable global transcription activator SNF2L2 0 0 144.17 2.53E-05 2572000 1504.6 1342.2 1289 1389.6 1364.2 1382.2 1307 1416.8 1454.6 1327.5 FALSE FALSE TRUE 1328.233069 1383.551591 1358.687239 1446.273894 1263.565684 1355.836838 1357.411428 1578.082785 1394.640772 1319.603971 1.006539157 1.048459706 1.029617422 1.095990863 0.957534011 1.027457379 1.028650609 1.195876051 1.056863122 1 10.36588931 -4.248057417 3.519735123 1.013226484 1.220594362 0.631864554 0.037146096 0.128352152 2.695938325 0.004728169 0.071480022 5.65E-05 4.248057417 0.207367879 TAISSQS(ph)KLR ddPTM_HeLa_CUDC101_4h_R1 1 TAISSQSKLR 10 1 E7EVA0 E7EVA0 MAP4 Microtubule-associated protein 1 0 TAISS(0.001)QS(0.999)KLR 82.505 0.022348 3779400 1865 1557 1281 1176.1 1603.5 1425.2 1222.9 1128.7 1577.2 1406.7 TRUE FALSE FALSE 1646.387527 1604.969325 1350.254735 1224.066442 1485.213 1398.016685 1270.067663 1257.186646 1512.187148 1398.332886 1.177393126 1.147773424 0.965617521 0.875375566 1.06213121 0.999773873 0.908272755 0.899061059 1.08142143 1 10.44949213 -6.691973664 7.690968644 1.090828368 0.952798476 0.547751236 0.066487347 0.195671643 18.72117564 0.013514199 0.019105947 2.03E-07 6.691973664 -0.138029892 KDDEDEEEEEEVS(ph)DS ddPTM_HeLa_CUDC101_4h_R1 1 KDDEDEEEEEEVSDS 15 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 KDDEDEEEEEEVS(0.591)DS(0.409) 108.36 0.0058613 22328000 6597.7 5455.1 5478.6 4845.9 4990.1 5139.6 4919 3926.2 5475.3 6641.7 TRUE FALSE FALSE 5824.327607 5623.165165 5774.789688 5043.536748 4621.990265 5041.570693 5108.727478 4373.142738 5249.605817 6602.194873 0.882180505 0.85171148 0.874677255 0.763918189 0.700068743 0.763620401 0.773792288 0.662377107 0.795130395 1 12.68873001 -6.691865839 0.232204176 1.041133459 0.620585979 0.39852503 0.072259845 0.68043003 0.109859281 0.058855677 0.104845662 2.03E-07 6.691865839 -0.42054748 VHSEAIS(ph)PAPEEK ddPTM_HeLa_CUDC101_4h_R1 1 VHSEAISPAPEEK 13 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 VHS(0.002)EAIS(0.998)PAPEEK 84.508 0.015977 40348000 6198 5565.3 5577.1 6021.4 6145.5 6153.2 5681 5144.9 5774.9 6025.5 TRUE FALSE FALSE 5471.479836 5736.760296 5878.614896 6266.978719 5692.158709 6035.837962 5900.118073 5730.57462 5536.856178 5989.660058 0.913487541 0.957777276 0.981460523 1.046299566 0.950330846 1.007709603 0.985050573 0.95674455 0.924402407 1 12.54825841 -6.691407878 5.022857121 0.95790188 0.990111202 0.232320967 0.033285534 0.33235564 15.75769843 0.00628033 0.008878211 2.04E-07 6.691407878 0.032209322 NLEQILNGGES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 NLEQILNGGESPK 13 0 Q13033-2;Q13033;G3V340;G3V3G7 Q13033-2 STRN3 Striatin-3 1 0 NLEQILNGGES(1)PK;NLEQILNGGES(1)PK;NLEQILNGGES(1)PK ;; 119.31 0.0022963 75827600 8751.5 7585.6 6452.1 6224.6 6702.3 7187.1 6312.2 5815.2 7898.1 7824.6 TRUE FALSE FALSE 7725.662436 7819.303345 6800.920043 6478.466093 6207.884682 7050.018042 6555.663668 6477.178862 7572.536975 7778.058931 0.993263551 1.005302661 0.874372398 0.832915532 0.798127751 0.906398126 0.842840576 0.832750037 0.973576704 1 12.92519445 -6.690668758 4.156401462 0.997573611 0.844623527 0.877781933 0.026672999 0.047050032 1.59031681 0.003978851 0.00563417 2.04E-07 6.690668758 -0.152950083 ELPSQASGGLANPPPVNLEDS(ph)LDEDLIRNPASSVEAVSK ddPTM_HeLa_CUDC101_4h_R1 1 ELPSQASGGLANPPPVNLEDSLDEDLIRNPASSVEAVSK 39 1 Q9NPG3;Q9NPG3-2;K7EJT1 Q9NPG3 UBN1 Ubinuclein-1 1 0 ELPSQASGGLANPPPVNLEDS(0.973)LDEDLIRNPAS(0.012)S(0.014)VEAVSK 83.265 2.03E-11 3284700 755.26 626.89 773.16 787.87 907.92 886.01 806.28 753.31 761.2 689.49 TRUE FALSE FALSE 666.7295677 646.2037379 814.9593683 820.0027441 840.9445504 869.1108354 837.3784897 839.0637654 729.8230138 685.3888828 0.97277558 0.942827866 1.189046669 1.196405084 1.226959718 1.268055052 1.221756744 1.224215604 1.064830539 1 9.420778981 -6.689755426 5.153587855 0.983506314 1.225457886 0.91157944 0.034491709 0.028944378 1.418996414 0.004116308 0.005820164 2.04E-07 6.689755426 0.241951572 LMIEMDGTENK ddPTM_HeLa_CUDC101_4h_R1 3 LMIEMDGTENK 11 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 ENO1 Alpha-enolase;Enolase 0 0 ;; ;; 137 0.0076709 82891900 5748.2 4928.8 5228.3 4813.3 5717.9 4556.3 4997.9 4756.4 4395.2 6179.8 FALSE FALSE TRUE 5074.40471 5080.650486 5510.957713 5009.607179 5296.101909 4469.396169 5190.670677 5297.84935 4214.027996 6143.042275 0.826040988 0.827057712 0.897105614 0.815492871 0.862130142 0.727554194 0.844967436 0.862414601 0.685983883 1 12.5847376 -9.378415686 0.546866662 1.038855466 0.826721161 0 0.107283181 0.639324485 0.249279078 0.072100967 0.010044486 4.18E-10 9.378415686 -0.212134305 LMK(ac)ICMNEDPAK ddPTM_HeLa_CUDC101_4h_R1 2 LMKICMNEDPAK 12 1 A0A0A0MTH3;Q13418-3;Q13418-2;Q13418 A0A0A0MTH3 ILK Integrin-linked protein kinase 0 1 ; LMK(1)ICMNEDPAK;LMK(1)ICMNEDPAK 152.85 8.21E-05 856160 288.91 465.79 406.56 329.76 400.24 439.93 187.12 382.67 428.45 0 FALSE TRUE FALSE 255.0444078 480.1404378 428.5398634 343.2090381 370.7150926 431.5390682 194.3372811 426.231606 410.7891097 0 0 IIPELVGS(ph)PTQSTSSR ddPTM_HeLa_CUDC101_4h_R1 1 IIPELVGSPTQSTSSR 16 0 Q9NSI6-3;Q9NSI6-2;Q9NSI6;H7C409 Q9NSI6-3 BRWD1 Bromodomain and WD repeat-containing protein 1 1 0 IIPELVGS(0.929)PT(0.071)QSTSSR 167.29 8.57E-06 13422000 1607.3 1256.6 1135.9 870.7 1393.7 1234.9 1147.5 842.53 1346.7 1252.4 TRUE FALSE FALSE 1418.894731 1295.314357 1197.31019 906.2109095 1290.889528 1211.34634 1191.759459 938.4402096 1291.188456 1244.950669 1.139719642 1.040454364 0.961733039 0.727909091 1.036900144 0.973007501 0.957274444 0.753797104 1.037140256 1 10.28187286 -6.689717087 3.707047037 1.066486261 0.901825133 0.392308066 0.095067452 0.184984361 5.060550452 0.016016999 0.02273853 2.04E-07 6.689717087 -0.164661128 RLS(ph)S(ph)LRAS(ph)TSKSESSQK ddPTM_HeLa_CUDC101_4h_R1 1 RLSSLRASTSKSESSQK 17 3 P62753;A2A3R5 P62753 RPS6 40S ribosomal protein S6 3 0 RLS(0.979)S(0.978)LRAS(0.772)T(0.185)S(0.056)KS(0.019)ES(0.007)S(0.002)QK 46.415 0.037153 64767000 3364.3 3233.6 3390.2 4276.7 5681 4436.2 5480.3 3081.8 2553.3 2392.3 TRUE FALSE FALSE 2969.941854 3333.223383 3573.484467 4451.122311 5261.923948 4351.586876 5691.677007 3432.619655 2448.051893 2378.070493 1.248887223 1.401650369 1.502682312 1.871736908 2.212686278 1.829881363 2.393401299 1.443447393 1.029427807 1 11.21557577 -6.688288161 0.964510419 1.09266049 2.010571863 0.70225823 0.244833718 0.182744683 0.339648844 0.044408803 0.072809571 2.05E-07 6.688288161 0.917911374 EGPVLATS(ph)SGAGVFK ddPTM_HeLa_CUDC101_4h_R1 1 EGPVLATSSGAGVFK 15 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 EGPVLAT(0.171)S(0.658)S(0.171)GAGVFK 142.45 0.0003849 7675600 3686.3 2065.9 2079.6 1977.2 1524.7 1473.6 1727.3 2141.8 2159.4 2221.4 TRUE FALSE FALSE 3254.197502 2129.54793 2192.029466 2057.838762 1412.225919 1445.493535 1793.92254 2385.613855 2070.388618 2208.187014 1.473696513 0.964387489 0.99268289 0.931913261 0.639540904 0.654606483 0.81239611 1.080349553 0.937596592 1 11.10864665 -6.685263029 1.715729829 1.219076745 0.805336177 0.267195477 0.191190248 0.255674536 1.532695901 0.03736992 0.056006071 2.06E-07 6.685263029 -0.413740568 DVT(ph)TANLERFMRR ddPTM_HeLa_CUDC101_4h_R1 1 DVTTANLERFMRR 13 2 H0YHS2;F8VRX1;O95398-3;O95398 H0YHS2 RAPGEF3 Rap guanine nucleotide exchange factor 3 1 0 DVT(0.5)T(0.5)ANLERFMRR 81.525 0.036803 22818000 594.52 1154.4 689.71 1106.3 1625.3 1324.7 1209.4 935.79 1632.4 695.7 TRUE FALSE FALSE 524.8312668 1189.965696 726.9978089 1151.419696 1505.404857 1299.433555 1256.046963 1042.316551 1565.111781 691.5619455 0.758907095 1.720692851 1.051240332 1.664955256 2.176818529 1.878983601 1.8162465 1.507191883 2.263154865 1 9.433714674 -6.683250016 1.092677613 0.8927751 1.839123937 0 0.515738962 0.200620127 0.479233897 0.053335905 0.085414026 2.07E-07 6.683250016 0.946348836 LMQLVDHR ddPTM_HeLa_CUDC101_4h_R1 1 LMQLVDHR 8 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 0 96.034 0.0013997 0 6280 4335.1 2146.7 4042.9 3266.1 3793.5 3882.4 3232 3061.5 1260.6 FALSE FALSE TRUE 5543.86792 4468.659293 2262.757095 4207.786937 3025.16631 3721.145308 4032.145469 3599.917816 2935.303674 1253.101895 4.424115821 3.566078154 1.805724741 3.357896874 2.414142315 2.969547267 3.217731522 2.87280534 2.342430161 1 10.29128802 -9.560782685 1.350351104 1.006328635 3.218348716 0.285383537 0.771595449 0.268956284 0.882888729 0.536186145 0.127858617 2.75E-10 9.560782685 2.212020081 KASATCSSATAAASSGLEEWT(ph)SRSPR ddPTM_HeLa_CUDC101_4h_R1 1 KASATCSSATAAASSGLEEWTSRSPR 26 2 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 KASATCSSATAAAS(0.003)S(0.01)GLEEWT(0.431)S(0.431)RS(0.124)PR 75.939 0.00053451 18298000 1423.1 1656.1 1684.3 1789.6 2212.7 1723.7 2023.8 1838.4 1573.9 1732.3 TRUE FALSE FALSE 1256.286375 1707.122478 1775.358353 1862.587623 2049.473529 1690.823294 2101.858644 2047.676025 1509.023176 1721.996203 0.729552349 0.99136251 1.030988541 1.081644443 1.190173083 0.981897226 1.220594239 1.189129234 0.876322011 1 10.74986625 -6.681825194 1.867880156 0.873506961 1.131926247 0.60786002 0.09043432 0.209590194 1.492496134 0.019987995 0.029735765 2.08E-07 6.681825194 0.258419286 DCSPSS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 1 DCSPSSPLK 9 0 F5H269;Q9Y485 F5H269 DMXL1 DmX-like protein 1 1 0 DCS(0.061)PS(0.21)S(0.729)PLK 115.23 0.0076288 33757000 13085 10317 12454 11935 12561 13169 11468 11101 12643 12478 TRUE FALSE FALSE 11551.19614 10634.85454 13127.30091 12421.76089 11634.40006 12917.82327 11910.3246 12364.69297 12121.85019 12403.7803 0.931264167 0.857388174 1.058330653 1.001449605 0.937972116 1.041442444 0.960217314 0.996848756 0.97727063 1 13.59849226 -6.681542256 22.73854943 0.958322472 0.996810067 0.225331667 0.048596702 25.8083871 7341.682903 0.008160153 0.011540195 2.08E-07 6.681542256 0.038487596 DKS(ph)DSDTEGLLFSR ddPTM_HeLa_CUDC101_4h_R1 2 DKSDSDTEGLLFSR 14 1 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 DKS(0.899)DS(0.094)DT(0.006)EGLLFS(0.001)R;DKS(0.989)DS(0.011)DTEGLLFSR ; 165.24 9.30E-05 154029000 6669.1 5736 5002.6 4457.5 5493.1 6115.1 5866.4 3559.7 6287 5516.4 TRUE FALSE FALSE 5887.358208 5912.719361 5273.055688 4639.296117 5087.884957 5998.464656 6092.669013 3964.921859 6027.847199 5483.588207 1.073632444 1.078257363 0.961606796 0.846032915 0.927838628 1.093894076 1.111073404 0.723052445 1.099252346 1 12.42090452 -6.681044518 7.627079113 1.038938092 0.952645367 0.209655534 0.108484698 0.382923536 31.37239347 0.016764622 0.023710828 2.08E-07 6.681044518 -0.086292725 EFTGS(ph)PPSSATKK ddPTM_HeLa_CUDC101_4h_R1 2 EFTGSPPSSATKK 13 1 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 0 EFT(0.161)GS(0.801)PPS(0.015)S(0.004)AT(0.018)KK;EFT(0.143)GS(0.851)PPS(0.002)S(0.002)AT(0.002)KK ; 71.806 0.025876 336420000 8436 7217.6 7812.8 8502.9 10191 8069 7749.8 7188.9 8646.6 7586.3 TRUE FALSE FALSE 7447.144868 7439.965701 8235.1836 8849.685015 9439.230233 7915.097269 8048.712382 8007.255317 8290.183488 7541.17635 0.987530927 0.986578931 1.092029044 1.173515192 1.251692017 1.049583898 1.067301971 1.061804544 1.099322321 1 12.88057387 -6.680797367 4.335714047 0.993292101 1.121963392 0.327440031 0.065475881 0.1316695 4.651730676 0.009448721 0.01339876 2.09E-07 6.680797367 0.128671291 ALEIS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 ALEISPR 7 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 0 ALEIS(1)PR 85.862 0.038147 13970000 3751.5 3285.3 2965.6 2680.2 3012.2 3236 3003.1 2764.5 3148.6 3534.9 TRUE FALSE FALSE 3311.754857 3386.516199 3125.929306 2789.510141 2789.996007 3174.278692 3118.930573 3079.199506 3018.813375 3513.874258 0.942479615 0.963755658 0.889596234 0.793855994 0.793994265 0.9033558 0.887604491 0.876297579 0.859112522 1 11.77884685 -6.680663194 3.357664646 0.971913623 0.851916097 0.356363262 0.050784844 0.112593596 2.540888914 0.006758823 0.009649573 2.09E-07 6.680663194 -0.119997526 EEAPAS(ph)PLRPLYPQIS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 2 EEAPASPLRPLYPQISPLK 19 1 P85037-2;P85037;U3KQ26 P85037-2;U3KQ26 FOXK1 Forkhead box protein K1 2 0 EEAPAS(1)PLRPLY(0.005)PQIS(0.995)PLK;EEAPAS(0.999)PLRPLY(0.077)PQIS(0.923)PLK ; 62.717 0.030693 314500000 9383.3 7741 6501.4 6433.3 6690.3 7153.4 5701 5127.3 7942.3 8837.3 TRUE FALSE FALSE 8283.403798 7979.491035 6852.88535 6695.677781 6196.769898 7016.960813 5920.88948 5710.971107 7614.915032 8784.735347 0.942931514 0.908335962 0.780090131 0.762194593 0.705402002 0.798767468 0.673997479 0.650101669 0.866834883 1 13.10078311 -6.679795844 0.700832837 0.987851253 0.689641393 0.769549038 0.053664935 0.13099403 0.130533498 0.008891102 0.015988287 2.09E-07 6.679795844 -0.29820986 RGS(ph)PVPPVPER ddPTM_HeLa_CUDC101_4h_R1 2 RGSPVPPVPER 11 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RGS(1)PVPPVPER;RGS(1)PVPPVPER ; 69.431 0.032811 80518000 4625 3656.8 3751.2 3869.7 3683.9 3513.6 3025.7 3629.7 4094.2 4346.6 TRUE FALSE FALSE 4082.864511 3769.461674 3954.001219 4027.523092 3412.146036 3446.583934 3142.402263 4042.890376 3925.435343 4320.74623 0.944944298 0.872409874 0.915119984 0.932135996 0.789712206 0.797682565 0.727282302 0.935692624 0.908508654 1 12.07706478 -6.679578706 0.4856623 0.991772307 0.797948466 0.358774574 0.064429004 0.493428096 0.250791238 0.019136024 0.037795879 2.09E-07 6.679578706 -0.193823841 TNSMS(ph)SSGLGSPNR ddPTM_HeLa_CUDC101_4h_R1 1 TNSMSSSGLGSPNR 14 0 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 1 0 TNS(0.01)MS(0.382)S(0.382)S(0.113)GLGS(0.113)PNR 90.476 0.028472 12210000 3110.6 2311.2 2400.9 2640.7 2636.8 2355 2350.6 2314.6 2743.7 2662.6 TRUE FALSE FALSE 2745.980183 2382.405333 2530.699916 2748.39916 2442.288517 2310.082299 2441.263429 2578.084708 2630.603525 2646.762737 1.03748634 0.900120475 0.956149141 1.038400277 0.922745542 0.872795384 0.922358244 0.974052065 0.993894726 1 11.37001316 -6.679150053 0.739039096 1.01669871 0.927612073 0.198408011 0.048276145 0.549139366 0.605630341 0.011395424 0.020180452 2.09E-07 6.679150053 -0.089086637 LNDGHFMPVLGFGTYAPAEVPK ddPTM_HeLa_CUDC101_4h_R1 3 LNDGHFMPVLGFGTYAPAEVPK 22 0 B4DK69;P52895;S4R3P0;P52895-2;Q04828 B4DK69;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 0 0 ;; ;; 139.25 4.12E-07 40157400 7696.7 6263.8 7010.8 7254.6 7353.6 6493.8 6316 6484.2 7153.2 7818.1 FALSE FALSE TRUE 6794.504493 6456.780254 7389.825055 7550.473945 6811.139578 6369.941584 6559.610236 7222.335118 6858.342068 7771.597594 0.874273843 0.830817625 0.950875926 0.971547208 0.87641434 0.819643774 0.844049136 0.92932438 0.882488058 1 12.92399549 -9.2432613 0.808651661 1.005924662 0.885448867 0 0.059908119 0.568763563 0.618291594 0.04404042 0.010102281 5.71E-10 9.2432613 -0.120475795 EDTDHEEKAS(ph)NEDVTK ddPTM_HeLa_CUDC101_4h_R1 2 EDTDHEEKASNEDVTK 16 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 EDTDHEEKAS(0.995)NEDVT(0.005)K;EDTDHEEKAS(0.998)NEDVT(0.002)K ; 97.621 0.0029358 123772000 8964.5 7269.7 6999.1 7079.9 5823.8 6799.1 5934.2 5300.7 7115.2 9087.9 TRUE FALSE FALSE 7913.694899 7493.67084 7377.492517 7368.648924 5394.189877 6669.418496 6163.084082 5904.110262 6821.908444 9033.844767 0.87600519 0.829510694 0.816650353 0.815671413 0.597108985 0.738270213 0.682221606 0.65355454 0.755150063 1 13.14112441 -6.678243924 0.309860838 1.012997274 0.599174239 0.38049181 0.087615535 0.443513038 0.107516693 0.035635123 0.069669623 2.10E-07 6.678243924 -0.413823034 LNDGHFMPVLGFGTYAPPEVPR ddPTM_HeLa_CUDC101_4h_R1 3 LNDGHFMPVLGFGTYAPPEVPR 22 0 A0A0A0MSS8;P42330 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 0 0 ;; ;; 114.92 6.95E-06 36261000 3749.3 3656.3 3705.9 3415.6 4723.7 4086.9 4020.9 3481.2 4205.9 4102.7 FALSE FALSE TRUE 3309.812738 3768.946269 3906.252164 3554.902931 4375.242062 4008.949192 4175.98746 3877.485737 4032.531022 4078.296958 0.81156737 0.924147091 0.95781455 0.871663581 1.072811055 0.982995901 1.023953749 0.95076101 0.988778175 1 11.99375111 -5.771121003 24.99794173 0.911480207 1.007036776 0.292719286 0.060036136 203.6462945 525815.1465 0.011183884 0.020457127 1.69E-06 5.771121003 0.095556569 GYT(ph)SDDDTWEPEIHLEDCK ddPTM_HeLa_CUDC101_4h_R1 1 GYTSDDDTWEPEIHLEDCK 19 0 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 GYT(0.5)S(0.5)DDDTWEPEIHLEDCK 126.09 6.69E-05 84938000 4798.7 4125.2 3603.7 3662.1 2902.6 4201.5 3444.4 2812.3 3166.8 4587.1 TRUE FALSE FALSE 4236.20366 4252.292522 3798.526923 3811.456267 2688.480981 4121.363388 3577.251662 3132.440864 3036.263164 4559.815725 0.929029574 0.932557976 0.833043954 0.835879451 0.589602989 0.903844286 0.784516717 0.686966547 0.665874094 1 12.15475981 -6.678239407 1.098656428 0.971555249 0.754191592 0.027841235 0.124738811 0.234895563 0.567380123 0.014362003 0.023040142 2.10E-07 6.678239407 -0.217363656 TQEDEEEIST(ph)SPGVSEFVSDAFDACNLNQEDLRK ddPTM_HeLa_CUDC101_4h_R1 2 TQEDEEEISTSPGVSEFVSDAFDACNLNQEDLRK 34 1 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 1 0 TQEDEEEIS(0.118)T(0.478)S(0.342)PGVS(0.062)EFVSDAFDACNLNQEDLRK;TQEDEEEIS(0.113)T(0.397)S(0.397)PGVS(0.088)EFVS(0.005)DAFDACNLNQEDLRK ; 117.94 1.93E-16 39588000 4128.7 4077.5 3803.9 3732.3 5400.5 4934.2 4229.3 3657.8 3866.4 3588.7 TRUE FALSE FALSE 3644.740045 4203.122942 4009.55034 3884.519326 5002.115874 4840.088356 4392.425518 4074.189167 3707.025356 3567.354253 1.021692769 1.178218546 1.123956315 1.088907647 1.402192078 1.356772558 1.231283805 1.142075857 1.039152574 1 11.80063877 -6.678114885 0.861308951 1.005195097 1.271549076 0.546074332 0.087527229 0.275157983 0.40868009 0.018318 0.031087799 2.10E-07 6.678114885 0.266353979 AINGPTSASGDDIS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 AINGPTSASGDDISK 15 0 B4DXZ6;P51114-3;P51114;H7C4S4 B4DXZ6 FXR1 Fragile X mental retardation syndrome-related protein 1 1 0 AINGPTS(0.001)AS(0.425)GDDIS(0.574)K 136.17 6.23E-05 0 1168.9 1252.7 1270.9 1049.1 1583.8 1466.4 1343.1 1113.2 1286.2 1184 TRUE FALSE FALSE 1031.883314 1291.294202 1339.608698 1091.886833 1466.966229 1438.430863 1394.903817 1239.922188 1233.182292 1176.957515 0.876737945 1.097145976 1.138196308 0.927719836 1.246405423 1.222160396 1.185177713 1.05349783 1.047771288 1 10.20084653 -6.677941227 1.068116536 0.944088452 1.157322287 0.268951917 0.099448974 0.320615473 0.731534956 0.018963514 0.030598696 2.10E-07 6.677941227 0.213233836 S(ph)LDGAAAVDSADR ddPTM_HeLa_CUDC101_4h_R1 2 SLDGAAAVDSADR 13 0 P11171;A0A2R8Y5G2;P11171-7;P11171-2;A0A2R8Y5Z6;A0A2R8Y570;A0A2R8YCW8;A0A3B3IU06;A0A2R8Y6G5;A0A2R8YFR9;A0A2R8YD30;Q4VB86;A0A2U3TZH6;A0A2R8Y420;P11171-3;P11171-5;P11171-4;A0A3B3ITP0;A0A2R8Y7N0;A0A2R8Y7Y3;A0A3B3IUD6;A0A2R8Y4N6;P11171-6 P11171 EPB41 Protein 4.1 1 0 S(1)LDGAAAVDSADR;S(1)LDGAAAVDSADR ; 186.16 4.94E-11 24682200 2618.7 2422.4 1818.58 1720.35 2322.52 1833.79 1845.4 1437.08 2232.8 2291.4 TRUE FALSE FALSE 2311.739956 2497.031273 1916.897936 1790.513309 2151.192327 1798.813511 1916.577696 1600.671378 2140.763039 2277.770651 1.0149134 1.096261062 0.841567581 0.786081473 0.944428855 0.789725476 0.841426987 0.702735975 0.939850129 1 11.15340677 -6.677309054 7.052928018 1.013763972 0.820346486 0.673092433 0.066677074 0.089160868 6.298096735 0.009323132 0.013188748 2.10E-07 6.677309054 -0.193417487 IMPDS(ph)NDSPPAER ddPTM_HeLa_CUDC101_4h_R1 1 IMPDSNDSPPAER 13 0 Q9Y657 Q9Y657 SPIN1 Spindlin-1 1 0 IMPDS(0.994)NDS(0.006)PPAER 157.09 8.27E-05 2684900 3360.1 2792.8 2611.6 2415.1 2281.8 2460.3 2455.7 2846.5 3078.3 3071.7 TRUE FALSE FALSE 2966.234172 2878.842858 2752.790996 2513.598217 2113.47616 2413.373877 2550.417172 3170.534054 2951.411171 3053.429392 0.971443512 0.942822803 0.901540741 0.823204959 0.69216474 0.790381426 0.835263189 1.038351849 0.96658897 1 11.57621477 -6.676393478 1.860522249 0.985962927 0.826569979 0.375583951 0.081229145 0.2357597 1.664885681 0.013823737 0.020618411 2.11E-07 6.676393478 -0.159392948 ETEGSLSDS(ph)DFKEPPSEGR ddPTM_HeLa_CUDC101_4h_R1 1 ETEGSLSDSDFKEPPSEGR 19 1 P78411-3;P78411-2;P78411 P78411-3 IRX5 Iroquois-class homeodomain protein IRX-5 1 0 ET(0.001)EGS(0.063)LS(0.165)DS(0.772)DFKEPPSEGR 55.208 0.025732 11484000 1399.9 1183.9 953.39 941.97 929.32 1117.9 766.03 838.48 1365.9 1257.1 TRUE FALSE FALSE 1235.805844 1220.374556 1004.933147 980.3876081 860.7659151 1096.57792 795.5760337 933.9291739 1309.597024 1249.622713 0.988943167 0.976594409 0.804189246 0.784546886 0.688820638 0.8775272 0.636652988 0.747368917 1.047993934 1 10.28727687 -6.675063422 2.188247271 0.995702208 0.744282952 0.800120468 0.060961175 0.088471641 0.866168404 0.008910969 0.013098058 2.11E-07 6.675063422 -0.251419256 AKTQT(ph)PPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_HeLa_CUDC101_4h_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 2 0 AKT(0.143)QT(0.715)PPVS(0.142)PAPQPT(0.288)EERLPS(0.347)S(0.347)PVY(0.015)EDAAS(0.003)FK 68.934 2.39E-05 10804000 1170.4 1431.8 1209.1 1286.7 1959.4 1615.5 1514.1 1731.3 1580.2 810.21 TRUE FALSE FALSE 1033.207486 1475.912061 1274.467603 1339.177188 1814.858966 1584.687029 1572.499344 1928.384194 1515.063487 805.3908349 1.282864718 1.832541416 1.582421289 1.662766858 2.253389146 1.967600028 1.952467394 2.394345838 1.881153127 1 9.653545245 -6.674215817 0.389974025 0.977012063 2.309369908 0.336438017 0.324589021 0.318617703 0.111090887 0.081790407 0.164997826 2.12E-07 6.674215817 1.332357845 RET(ph)WKPGPGSEIADPT(ph)LAEMGK ddPTM_HeLa_CUDC101_4h_R1 1 RETWKPGPGSEIADPTLAEMGK 22 2 H3BND4 H3BND4 PDXDC1 2 0 RET(0.991)WKPGPGS(0.071)EIADPT(0.938)LAEMGK 45.916 0.0029834 0 247.08 312.54 320.89 381.93 518.18 386.27 358.16 464.35 359.77 256.68 TRUE FALSE FALSE 218.1176569 322.1689869 338.238284 397.5067562 479.9548938 378.9025433 371.9743512 517.209727 344.9401283 255.1532559 0.854849593 1.262648935 1.325627936 1.557913713 1.881045539 1.484999836 1.457846774 2.027055172 1.351893892 1 7.995220241 -6.674158963 1.360096289 0.93170739 1.679725155 0.582623451 0.218116547 0.129369366 0.482617744 0.030261197 0.046926959 2.12E-07 6.674158963 0.748017765 KPAT(ph)PAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLR ddPTM_HeLa_CUDC101_4h_R1 3 KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLR 32 2 P29692-2;E9PQ49;P29692;P29692-4;P29692-3;E9PRY8;A0A087X1X7;E9PK01;E9PQZ1;E9PI39;E9PL71;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 2 0 KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPAT(1)PAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR ;; 75.82 1.02E-05 254113000 11940.2 10109.5 8668.2 8914.4 9008.2 9321.6 9089.7 7051.2 10366.3 10137.8 TRUE FALSE FALSE 10540.58786 10420.96171 9136.829112 9277.967763 8343.683033 9143.806011 9440.292774 7853.880106 9938.996726 10077.49991 1.045952661 1.034082044 0.906656332 0.920661656 0.827951685 0.907348657 0.936769323 0.77934807 0.986256196 1 13.29885015 -6.673380204 3.641974487 1.023439689 0.879725373 0.680155898 0.046098553 0.094282633 2.448513933 0.007024414 0.010017609 2.12E-07 6.673380204 -0.143714315 LNFSHGTHEYHAETIK ddPTM_HeLa_CUDC101_4h_R1 1 LNFSHGTHEYHAETIK 16 0 P14618;P14618-2;H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 78.228 0.014359 12064000 1732.3 1132.8 870.44 935.03 2637.6 2136.1 1770.4 1478.1 1939.3 1583.2 FALSE FALSE TRUE 1529.24242 1167.700225 917.4986193 973.1645649 2443.029503 2095.357451 1838.684921 1646.360929 1859.361233 1573.783056 0.971698363 0.741970261 0.58298926 0.618360047 1.55232927 1.331414418 1.168321716 1.046116822 1.181459685 1 10.62002097 -5.760515992 24.99999953 0.909281024 1.271020165 0.478525642 0.211946341 19.88111576 538238.6251 0.032314665 0.061767001 1.74E-06 5.760515992 0.36173914 S(ph)LGALT(ph)GPQLLSLAQRPGR ddPTM_HeLa_CUDC101_4h_R1 1 SLGALTGPQLLSLAQRPGR 19 1 Q86U38-2 Q86U38-2 2 0 S(0.999)LGALT(0.999)GPQLLS(0.002)LAQRPGR 50.053 0.036199 7629000 3210 3734.3 3385.7 3705.5 5211.9 4196 4480.7 4535.8 4211.4 2248.9 TRUE FALSE FALSE 2833.728666 3849.349357 3568.741183 3856.626307 4827.428521 4115.968291 4653.5221 5052.137138 4037.804309 2235.523443 1.267590673 1.721900689 1.596378331 1.725155833 2.159417534 1.841165345 2.081625274 2.259934761 1.806200835 1 11.12639696 -6.671895614 0.417151248 0.991382533 2.246522465 0.429683822 0.279437795 0.218395201 0.085157662 0.053045684 0.107189607 2.13E-07 6.671895614 1.255139932 NKS(ph)NEDQSMGNWQIK ddPTM_HeLa_CUDC101_4h_R1 1 NKSNEDQSMGNWQIK 15 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 NKS(0.983)NEDQS(0.017)MGNWQIK 179.14 5.85E-07 26084000 3691.6 2829.1 3022.8 3471.6 2922.3 2594 2706.2 2805.4 3323 3522 TRUE FALSE FALSE 3258.876244 2916.261218 3186.221711 3613.186854 2706.727751 2544.523772 2810.579041 3124.755396 3186.024534 3501.050987 0.930827987 0.832967366 0.910075781 1.032029201 0.773118632 0.72678855 0.802781522 0.892519248 0.910019461 1 11.77357236 -6.671846109 0.305119298 1.006948808 0.775389863 0.24212219 0.08031779 1.401886764 0.33083404 0.062716595 0.122939308 2.13E-07 6.671846109 -0.231558945 LNGTDPEDVIR ddPTM_HeLa_CUDC101_4h_R1 2 LNGTDPEDVIR 11 0 P24844;J3KTJ1;J3QRS3;P19105;O14950 P24844;J3QRS3 MYL9;MYL12A;MYL12B Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 0 ; ; 125.23 0.017234 16781400 3380.3 2877.1 2829.1 2454.8 3072.2 2694 2740 3175.9 2799.7 2396.2 FALSE FALSE TRUE 2984.066358 2965.740041 2982.049704 2554.917355 2845.569927 2642.616439 2845.682718 3537.431619 2684.295181 2381.947296 1.252784377 1.245090538 1.251937735 1.072617081 1.194640172 1.109435311 1.194687524 1.485100709 1.126933071 1 11.21792578 -9.285232896 0.89323214 0.992818223 1.218153703 0.223060267 0.110857746 0.532995309 0.724536052 0.081751224 0.019505212 5.19E-10 9.285232896 0.22533548 RNS(ph)EGSELSCTEGSLTSSLDSR ddPTM_HeLa_CUDC101_4h_R1 3 RNSEGSELSCTEGSLTSSLDSR 22 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 RNS(0.896)EGS(0.104)ELSCTEGSLTSSLDSR;RNS(0.954)EGS(0.046)ELSCTEGSLTSSLDSR;RNS(0.998)EGS(0.002)ELSCTEGSLTSSLDSR ;; 148.64 2.22E-07 69573100 1842.75 1600.54 1736.19 1817.61 2214.76 1652.02 1978.41 1705.85 1884.89 1649.7 TRUE FALSE FALSE 1626.745638 1649.85074 1830.053683 1891.739992 2051.381567 1620.510471 2054.717936 1900.037069 1807.194036 1639.887511 0.991986113 1.006075557 1.115962937 1.15357912 1.250928221 0.988183921 1.252962732 1.15863866 1.102023172 1 10.67938114 -6.671346694 2.740120537 0.995890047 1.160502974 0.395613273 0.076050625 0.137676705 2.103990242 0.010212792 0.014778264 2.13E-07 6.671346694 0.164612927 LNISFPATGCQK ddPTM_HeLa_CUDC101_4h_R1 2 LNISFPATGCQK 12 0 P62753;A2A3R7 P62753 RPS6 40S ribosomal protein S6 0 0 ; ; 171.62 2.10E-05 1062130 1770.33 1027.41 446.62 995.27 847.71 878.01 869.29 760.54 686.15 138.01 FALSE FALSE TRUE 1562.814601 1059.063284 470.7656282 1035.861413 785.1761222 861.2634221 902.8188065 847.1167994 657.8666066 137.1891104 11.39168114 7.719732866 3.431508717 7.55060959 5.723312295 6.277928472 6.580834324 6.174810792 4.795326719 1 7.100022159 -9.609187825 1.431698667 1.020538408 7.391056914 0.2611992 2.240742731 0.277622066 1.02668128 1.671174666 0.390107132 2.46E-10 9.609187825 6.370518505 KGAANASGSS(ph)PDAPAKDAR ddPTM_HeLa_CUDC101_4h_R1 4 KGAANASGSSPDAPAKDAR 19 2 E7EPJ7;O75962-5;O75962-4;O75962 E7EPJ7 TRIO Triple functional domain protein 1 0 KGAANAS(0.001)GS(0.082)S(0.917)PDAPAKDAR;KGAANAS(0.002)GS(0.184)S(0.814)PDAPAKDAR;KGAANAS(0.009)GS(0.225)S(0.766)PDAPAKDAR;KGAANAS(0.001)GS(0.221)S(0.778)PDAPAKDAR ;;; 64.89 0.0093426 83751000 13937.6 16159.5 14994.5 14851.9 21486.3 16498.2 17819.7 18892.2 16549.2 11132 TRUE FALSE FALSE 12303.85566 16657.35504 15805.14803 15457.62468 19901.29846 16183.52432 18507.0118 21042.81168 15867.03497 11065.78637 1.11188263 1.505302424 1.42828964 1.396884429 1.798453159 1.462482989 1.672453378 1.901610151 1.433882278 1 13.43381836 -6.670876045 0.468860099 0.98754991 1.783711425 0.482185213 0.189566724 0.287056413 0.136827398 0.045078355 0.090227391 2.13E-07 6.670876045 0.796161514 LNLEAINYMAADGDFK ddPTM_HeLa_CUDC101_4h_R1 1 LNLEAINYMAADGDFK 16 0 P09382 P09382 LGALS1 Galectin-1 0 0 97.957 0.0031822 0 2689.1 2503.4 2135.8 1922.2 2210.3 2168.4 2096.4 2536.8 2475.6 2890.8 FALSE FALSE TRUE 2373.887774 2580.526787 2251.267808 2000.595624 2047.250573 2127.041383 2177.25885 2825.579058 2373.55472 2873.605393 0.826100821 0.898010142 0.783429699 0.696197059 0.712432743 0.740199537 0.75767496 0.983287081 0.82598492 1 11.48864625 -8.700934844 0.484886255 1.018719143 0.776255449 0.10085988 0.096540207 0.772341669 0.335660039 0.086121768 0.025515805 1.99E-09 8.700934844 -0.242463694 GIS(ph)PIVFDR ddPTM_HeLa_CUDC101_4h_R1 4 GISPIVFDR 9 0 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR ;;; 141.95 0.0016022 743438100 14860.3 12298.6 10884.1 11106.6 11631.7 11951.4 12040.3 7344.5 13659.3 12897.1 TRUE FALSE FALSE 13118.39816 12677.50529 11472.52737 11559.57515 10773.65266 11723.44696 12504.6984 8180.568193 13096.25787 12820.38748 1.023245061 0.98885508 0.894865884 0.901655677 0.840353124 0.914437803 0.975376012 0.638090558 1.021518101 1 13.64615225 -6.669143332 1.722674477 1.011789609 0.860976552 0.442322424 0.082480443 0.243569028 1.47077571 0.01295935 0.019546134 2.14E-07 6.669143332 -0.150813057 LNLYELK(ac)EGR ddPTM_HeLa_CUDC101_4h_R1 2 LNLYELKEGR 10 1 A0A087WXQ8;A0A087WY10;A0A087WUL2;P49720 A0A087WXQ8 PSMB3 Proteasome subunit beta type-3 0 1 ; LNLYELK(1)EGR;LNLYELK(1)EGR 140.07 0.00086094 2221900 774.7 488.82 457.8 660.579 765.31 589.92 692.46 691.97 563.57 674.45 FALSE TRUE FALSE 683.8908404 503.8799648 482.5500528 687.5202669 708.854606 578.6682589 719.1684142 770.7410678 540.3394061 670.4383414 1.020065229 0.751567942 0.719753067 1.025478742 1.05730022 0.863119281 1.072683899 1.149607682 0.80594944 1 9.388960847 -4.552990845 8.386267506 0.967194599 1.130844506 0.198832685 0.126609616 0.242350748 60.13366675 0.017444976 0.066795164 2.80E-05 4.552990845 0.163649907 LNMGEIETLDDY ddPTM_HeLa_CUDC101_4h_R1 2 LNMGEIETLDDY 12 0 I1E4Y6;Q6Y7W6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 0 0 ; ; 159.79 0.00071839 12091300 5983 5311.5 4915.4 4763.9 5754.9 5678.9 4739.4 5237.7 6034 5222.1 FALSE FALSE TRUE 5281.68181 5475.141019 5181.141392 4958.192433 5330.372492 5570.584444 4922.200246 5833.938596 5785.275966 5191.038717 1.017461456 1.054729375 0.998093383 0.955144568 1.026841213 1.073115565 0.948211045 1.123848022 1.114473669 1 12.34180753 -4.239977762 24.48672454 1.00984393 1.123848176 0.257481325 0.04933349 2867.66551 3271811.861 0.004691709 0.300337413 5.75E-05 4.239977762 0.114004246 LNNDDNVDGLLVQLPLPEHIDER ddPTM_HeLa_CUDC101_4h_R1 1 LNNDDNVDGLLVQLPLPEHIDER 23 0 P13995-2;P13995 P13995-2 MTHFD2 "Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase" 0 0 108.77 9.46E-06 4431500 814.58 1025.7 820.04 803.41 891 835.05 850.67 600.15 791.75 977 FALSE FALSE TRUE 719.0961672 1057.300601 864.3738429 836.1765324 825.2727051 819.1228125 883.4806269 668.4686501 759.1137299 971.1887605 0.74042884 1.08866643 0.890016316 0.860982506 0.849755206 0.843422871 0.909689921 0.688299409 0.781633562 1 9.923607915 -4.257129203 23.71897449 0.886469372 0.688299243 0.277663972 0.095128087 254.0215566 1397770.468 0.015061314 0.155432337 5.53E-05 4.257129203 -0.198170128 LGEASDS(ph)ELADADKASVASEVSTTSSTSKPPTGR ddPTM_HeLa_CUDC101_4h_R1 2 LGEASDSELADADKASVASEVSTTSSTSKPPTGR 34 2 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 LGEAS(0.003)DS(0.997)ELADADKASVASEVSTTSSTSKPPTGR;LGEAS(0.454)DS(0.546)ELADADKASVASEVSTTSSTSKPPTGR ; 127.16 5.26E-19 203962000 3368.7 3366.8 3397.5 3600.2 4150.1 4078.4 3288.2 3882.8 3898.2 3383.5 TRUE FALSE FALSE 2973.826093 3470.527117 3581.179127 3747.031717 3843.955391 4000.611315 3415.026975 4324.802257 3737.514546 3363.374792 0.884179218 1.031858574 1.064757676 1.114069038 1.142886425 1.18946343 1.015357249 1.285852016 1.111239388 1 11.71569384 -6.66884644 1.606297469 0.946165131 1.145954353 0.323961307 0.086924057 0.181436545 0.950318428 0.012330763 0.018751744 2.14E-07 6.66884644 0.199789222 LNPEDIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LNPEDIKK 8 1 P53396;P53396-2 P53396 ACLY ATP-citrate synthase 0 1 ; LNPEDIK(1)K;LNPEDIK(1)K 113.62 0.0036555 6523800 7467.8 2975.4 3108.8 3016.1 8012.9 5793.6 7554.3 6541.9 6196 4129.2 FALSE TRUE FALSE 6592.435804 3067.068547 3276.871132 3139.109595 7421.804331 5683.096733 7845.671882 7286.603453 5940.598257 4104.639335 1.606093804 0.747219986 0.798333511 0.764771114 1.808150175 1.384554469 1.911415655 1.775211622 1.447288732 1 12.00303975 -5.738304308 24.99239947 1.174712786 1.709569176 0.505410169 0.307209974 214.0106971 231190.6532 0.053171984 0.106290158 1.83E-06 5.738304308 0.53485639 EDS(ph)PGPEVQPMDK ddPTM_HeLa_CUDC101_4h_R1 2 EDSPGPEVQPMDK 13 0 O75382-3;O75382-2;O75382;E9PMW5;E9PMK8 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 EDS(1)PGPEVQPMDK;EDS(1)PGPEVQPMDK ; 225.29 7.51E-33 10743900 4630.3 3856.2 3637 3248.8 3858.1 4031.8 3348.1 4101.5 4539.3 3904.7 TRUE FALSE FALSE 4087.543253 3975.004951 3833.627221 3381.300107 3573.495649 3954.900132 3477.237339 4568.398181 4352.188133 3881.474671 1.053090281 1.024096584 0.987672868 0.871138006 0.920654121 1.018916898 0.895854703 1.176974879 1.121271811 1 11.92238916 -6.667844629 4.623774606 1.025684405 0.967901695 0.113562653 0.085877724 0.371473422 13.95293585 0.012105232 0.017184768 2.15E-07 6.667844629 -0.05778271 TGQIWPNDGEGAFHGDADGS(ph)FGTPPGYGCAADR ddPTM_HeLa_CUDC101_4h_R1 1 TGQIWPNDGEGAFHGDADGSFGTPPGYGCAADR 33 0 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 TGQIWPNDGEGAFHGDADGS(0.493)FGT(0.493)PPGY(0.013)GCAADR 41.483 0.031351 23374000 513.22 421.2 508.55 501.24 659.38 367.69 678.45 498.88 451.95 474.39 TRUE FALSE FALSE 453.0611296 434.1766728 536.0437513 521.6827337 610.7388511 360.6769259 704.6180438 555.6704827 433.3204297 471.5683072 0.960753983 0.920707915 1.136725567 1.106271829 1.295122768 0.76484556 1.49420144 1.178345691 0.91889218 1 8.881322952 -6.667082482 5.490888629 0.976572588 1.165690467 0.263335922 0.172222511 0.230258347 10.87551585 0.025138946 0.035619814 2.15E-07 6.667082482 0.189117878 LDNT(ph)PASPPRSPAEPNDIPIAK ddPTM_HeLa_CUDC101_4h_R1 1 LDNTPASPPRSPAEPNDIPIAK 22 1 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3;H0Y8P9 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 LDNT(0.7)PAS(0.297)PPRS(0.004)PAEPNDIPIAK 65.836 0.0081272 18455000 2471.6 1688.5 2006.5 1787.4 1887.1 1590.5 1469.5 1645.5 2006.3 2317.9 TRUE FALSE FALSE 2181.882795 1740.520684 2114.977459 1860.297898 1747.892393 1560.163862 1526.179107 1832.817069 1923.599465 2304.113028 0.946951286 0.755397267 0.917913936 0.807381355 0.758596636 0.677121237 0.662371632 0.795454497 0.834854645 1 11.16999577 -6.666639615 0.507963781 0.997106302 0.691386729 0.44733273 0.078710107 0.303095895 0.166295391 0.018590242 0.036847222 2.15E-07 6.666639615 -0.305719572 VPLAPITDPQQLQLS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 2 VPLAPITDPQQLQLSPLK 18 0 A0A286YFD6;P31350;P31350-2 A0A286YFD6 RRM2 Ribonucleoside-diphosphate reductase subunit M2 1 0 VPLAPITDPQQLQLS(1)PLK;VPLAPITDPQQLQLS(1)PLK ; 181.86 4.98E-11 861920000 18459.1 13974.6 12033.5 11413.7 12192 9284.6 8344.8 14739.5 14353.1 15218.7 TRUE FALSE FALSE 16295.35228 14405.14086 12684.06741 11879.20002 11292.62045 9107.511724 8666.661731 16417.3851 13761.45914 15128.1785 1.077152301 0.952205903 0.83843983 0.785236638 0.746462666 0.602023021 0.572882038 1.085218892 0.909657375 1 13.88495067 -6.665726294 1.641602184 1.036690077 0.734964145 0.364908548 0.13717461 0.207873046 1.137837462 0.021562762 0.032750845 2.16E-07 6.665726294 -0.301725931 VSAS(ph)SPTTK ddPTM_HeLa_CUDC101_4h_R1 1 VSASSPTTK 9 0 Q9BVI0;Q5JWZ0;Q5JXL1 Q9BVI0 PHF20 PHD finger protein 20 1 0 VS(0.001)AS(0.91)S(0.08)PT(0.009)TK 129.88 0.0033191 54630000 4952.5 3097 5144.6 4788.2 3389.6 3510.3 3966.9 1931.6 4173.8 5808 TRUE FALSE FALSE 4371.975458 3192.414899 5422.732638 4983.483492 3139.555961 3443.346876 4119.904662 2151.485536 4001.754197 5773.453758 0.75725478 0.552947167 0.939252805 0.863171977 0.543791653 0.596410229 0.713594468 0.372651385 0.693130034 1 12.4952189 -6.664224999 0.080625006 1.459594409 6.09E-13 0.224797448 0.162631174 13.55057905 0.619877382 4.775187308 6.159533847 2.17E-07 6.664224999 -1.459594409 LNQVCFDDDGTSSPQDR ddPTM_HeLa_CUDC101_4h_R1 2 LNQVCFDDDGTSSPQDR 17 0 H3BVG0;Q8N1F7;Q8N1F7-2;H3BPA9 H3BVG0 NUP93 Nuclear pore complex protein Nup93 0 0 ; ; 156.2 0.00036238 42177000 4016.4 3688.1 3748.5 3344.4 4316.6 3512.9 3565 3255.3 3537 2213.61 FALSE FALSE TRUE 3545.60368 3801.72599 3951.155249 3480.799088 3998.173018 3445.897285 3702.503244 3625.870194 3391.203363 2200.443349 1.611313321 1.727709096 1.795617801 1.581862623 1.816985209 1.566001364 1.682616935 1.647790749 1.541145499 1 11.10357851 -8.926906513 0.633231374 0.962342603 1.693986216 0.305832825 0.181729908 0.178726916 0.125830409 0.069519446 0.018965848 1.18E-09 8.926906513 0.731643613 GNDS(ph)DGEGESDDPEK ddPTM_HeLa_CUDC101_4h_R1 2 GNDSDGEGESDDPEK 15 0 O75351;K7EKZ3 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 1 0 GNDS(0.999)DGEGES(0.001)DDPEK;GNDS(0.979)DGEGES(0.021)DDPEK ; 246.42 1.16E-55 57365000 12899.6 9058.5 8734.8 8608.5 7013.3 7803.1 7124 6112.6 8697.3 11868 TRUE FALSE FALSE 11387.52844 9337.581648 9207.029709 8959.591839 6495.942831 7654.268868 7398.775066 6808.433676 8338.793613 11797.40861 0.965256763 0.791494298 0.780428144 0.759454227 0.550624552 0.648809338 0.627152565 0.577112644 0.706832652 1 13.52618237 -6.663884915 0.766307318 0.995869286 0.59651671 0.497331615 0.102140435 0.102969236 0.121711684 0.009676633 0.017141587 2.17E-07 6.663884915 -0.399352575 DSSKGEDS(ph)AEETEAK ddPTM_HeLa_CUDC101_4h_R1 3 DSSKGEDSAEETEAK 15 1 Q12906-7;Q12906-4;Q12906-6;Q12906;Q12906-5;Q12906-2;Q12906-3 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 DSSKGEDS(0.999)AEET(0.001)EAK;DSSKGEDS(0.997)AEET(0.003)EAK;DSSKGEDS(0.967)AEET(0.032)EAK ;; 212.92 5.15E-23 34507900 6490.1 4839.9 4767.1 4698.51 4335.89 4487.6 4467.9 3402.67 5164.4 5974.6 TRUE FALSE FALSE 5729.340316 4989.011582 5024.823846 4890.135546 4016.040033 4402.006507 4640.2284 3790.016199 4951.521246 5939.062813 0.964687611 0.840033476 0.846063428 0.823385053 0.676207705 0.741195479 0.781306503 0.63815055 0.833720976 1 12.53601958 -6.662087799 0.67530076 0.99570112 0.703616571 0.604668263 0.067649504 0.155533057 0.144249836 0.010091278 0.018602246 2.18E-07 6.662087799 -0.292084549 ETVQTTQS(ph)PTPVEK ddPTM_HeLa_CUDC101_4h_R1 4 ETVQTTQSPTPVEK 14 0 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 0 ETVQTTQS(0.794)PT(0.205)PVEK;ETVQT(0.001)T(0.001)QS(0.614)PT(0.385)PVEK;ETVQTTQS(0.824)PT(0.176)PVEK;ETVQTT(0.081)QS(0.918)PT(0.001)PVEK ;;; 251.28 3.74E-56 96557000 19485.2 15898.7 13207.3 13380.1 12706.7 13630.1 12942.2 10856 15479.9 16802.2 TRUE FALSE FALSE 17201.17439 16388.5201 13921.32659 13925.79831 11769.35206 13370.12855 13441.38499 12091.80316 14841.81197 16702.25977 1.029871085 0.981215736 0.833499585 0.833767317 0.704656269 0.80049818 0.804764456 0.723962106 0.888611013 1 14.02775569 -6.658697407 1.831753462 1.015140019 0.770590703 0.74944517 0.053582205 0.065439116 0.447164614 0.005817216 0.008753053 2.19E-07 6.658697407 -0.244549316 LNSMPMEERK ddPTM_HeLa_CUDC101_4h_R1 1 LNSMPMEERK 10 1 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 0 0 80.231 0.010776 0 558.92 316.4 379.31 480.73 333.15 438.42 364.29 362.93 273.1 383.23 FALSE FALSE TRUE 493.4042449 326.147909 399.816646 500.3362473 308.5741882 430.057869 378.3407873 404.2444842 261.8427024 380.9505309 1.295192433 0.856142419 1.049523792 1.313389027 0.810011178 1.128907388 0.99314939 1.061146924 0.687340432 1 8.573459856 -6.10501154 0.948360505 1.12259196 1.024733117 0 0.207383172 1.460152519 2.579129826 0.030678193 0.074771546 7.85E-07 6.10501154 -0.097858843 KETS(ph)PESSLIQDEIAVK ddPTM_HeLa_CUDC101_4h_R1 1 KETSPESSLIQDEIAVK 17 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 KET(0.018)S(0.982)PES(0.001)SLIQDEIAVK 147.17 7.83E-05 35783000 4120.3 3354 3475.2 3228.2 3299.6 3509.5 2985 3154.6 3671.1 3777.6 TRUE FALSE FALSE 3637.32468 3457.332765 3663.079824 3359.859949 3056.195082 3442.562135 3100.13245 3513.706913 3519.775704 3755.130667 0.968627993 0.920695728 0.975486647 0.894738492 0.813871834 0.916762275 0.825572457 0.935708295 0.937324428 1 11.87464739 -6.657868135 0.811699892 0.989128653 0.869968374 0.420157738 0.043880069 0.280092565 0.370252103 0.008050229 0.014080631 2.20E-07 6.657868135 -0.119160279 ESPGS(ph)SEFFQEAVSHGK ddPTM_HeLa_CUDC101_4h_R1 1 ESPGSSEFFQEAVSHGK 17 0 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 ES(0.1)PGS(0.45)S(0.45)EFFQEAVSHGK 161.59 2.34E-05 10926000 2780.4 2446 2124.6 2047.6 2077.1 2101 1856.3 1957.6 2775.6 2691 TRUE FALSE FALSE 2454.485727 2521.358361 2239.462303 2131.109978 1923.876471 2060.926926 1927.898113 2180.445271 2661.188593 2674.993812 0.91756688 0.942566053 0.837184106 0.79667847 0.719207821 0.770441754 0.720711242 0.815121613 0.994839158 1 11.38531984 -6.656896521 0.921457174 0.969226675 0.748960932 0.882183424 0.034490024 0.13070286 0.221866648 0.007379822 0.012475551 2.20E-07 6.656896521 -0.220265743 LNTQEIFDDWAR ddPTM_HeLa_CUDC101_4h_R1 1 LNTQEIFDDWAR 12 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 179.19 7.93E-07 11844000 745.44 597.92 447.86 503.87 818.39 666.35 613.05 410.89 510.69 1175.6 FALSE FALSE TRUE 658.0606532 616.3412065 472.0726663 524.4199965 758.0190002 653.640484 636.6955439 457.6640567 489.639142 1168.607479 0.563115216 0.52741508 0.403961702 0.448756324 0.648651505 0.559332792 0.544832679 0.391631977 0.418993675 1 10.19057471 -8.949398262 0.602924748 1.036576581 0.502027956 0 0.192993494 0.264537993 0.164693551 0.07397161 0.018922646 1.12E-09 8.949398262 -0.534548625 ALDIDS(ph)DEESEPKEQK ddPTM_HeLa_CUDC101_4h_R1 1 ALDIDSDEESEPKEQK 16 1 Q96DR7-3;Q96DR7-4;Q96DR7 Q96DR7-3 ARHGEF26 Rho guanine nucleotide exchange factor 26 1 0 ALDIDS(0.909)DEES(0.091)EPKEQK 75.91 0.012787 18052000 2410.9 2190.8 2500 2487.2 3199.6 2488.2 2731.9 2522.9 2779 2479.7 TRUE FALSE FALSE 2128.297957 2258.295951 2635.157562 2588.638767 2963.571883 2440.741731 2837.270298 2810.096738 2664.448444 2464.950634 0.863424171 0.91616275 1.069050847 1.050178746 1.202284476 0.990178747 1.151045485 1.140021508 1.080933795 1 11.26734304 -6.656764268 3.580664284 0.932128543 1.104730029 0.397761752 0.078180481 0.130050753 3.243176237 0.011500961 0.016476129 2.20E-07 6.656764268 0.172601486 LTS(ph)DEEGEPSGK ddPTM_HeLa_CUDC101_4h_R1 4 LTSDEEGEPSGK 12 0 Q8WVC0;Q8WVC0-2 Q8WVC0 LEO1 RNA polymerase-associated protein LEO1 1 0 LT(0.057)S(0.943)DEEGEPSGK;LT(0.003)S(0.997)DEEGEPSGK;LT(0.061)S(0.939)DEEGEPSGK;LT(0.057)S(0.943)DEEGEPSGK ;;; 265.53 6.28E-70 367100000 36821.7 28541 28848.5 28038.3 28916.6 28354.2 27240.4 25082.1 31111.7 32153.3 TRUE FALSE FALSE 32505.51614 29420.31438 30408.13717 29181.82307 26783.48003 27813.39088 28291.07135 27937.34488 29829.26256 31962.05074 1.017003458 0.920476431 0.951382545 0.913014728 0.83797752 0.870200448 0.885145687 0.87407861 0.933271235 1 14.96407236 -6.655936166 1.022340745 1.008549531 0.869180627 0.622160565 0.033414477 0.122670002 0.256311969 0.004610971 0.007606875 2.21E-07 6.655936166 -0.139368904 LNVEFALIHK ddPTM_HeLa_CUDC101_4h_R1 1 LNVEFALIHK 10 0 P11908;P11908-2 P11908 PRPS2 Ribose-phosphate pyrophosphokinase 2 0 0 76.143 0.035546 353100 52.647 117.64 44.353 226.28 226.51 142.69 48.444 151.16 64.733 122.63 FALSE FALSE TRUE 46.47579847 121.264349 46.75085734 235.5086765 209.8008086 139.968426 50.31250131 168.3674434 62.06467834 121.9005913 0.381259828 0.994780646 0.383516247 1.931973208 1.721081139 1.148217777 0.412733858 1.381186437 0.509141733 1 6.929561314 -6.283995335 24.99399727 0.704371558 1.281534005 0.374378128 0.426144158 812.4043792 900214.1876 0.071500331 0.109267577 5.20E-07 6.283995335 0.577162447 T(ph)PEFLR ddPTM_HeLa_CUDC101_4h_R1 1 TPEFLR 6 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 1 0 T(1)PEFLR 98.458 0.010717 32732000 5156.8 4063.5 3331.2 3240.2 3101.8 3449.4 3197.8 3410.9 4471.5 3664.2 TRUE FALSE FALSE 4552.327721 4188.691619 3511.294748 3372.349361 2872.986394 3383.608442 3321.140217 3799.183069 4287.182877 3642.405175 1.249813654 1.149979592 0.964004436 0.925857833 0.788760793 0.928948944 0.911798676 1.043042409 1.177019763 1 11.8306757 -6.653535355 4.208798287 1.123579603 0.91522262 0.623953625 0.0823628 0.153504411 4.923383202 0.017457303 0.024884974 2.22E-07 6.653535355 -0.208356983 LNVTEQEK(ac)IDK ddPTM_HeLa_CUDC101_4h_R1 1 LNVTEQEKIDK 11 1 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879 P06733 ENO1 Alpha-enolase;Enolase 0 1 LNVTEQEK(1)IDK 134.98 0.00064252 954550 371.64 116.07 149.11 287.02 329.63 344.01 425.44 319.63 323.08 239.74 FALSE TRUE FALSE 328.0769226 119.6459791 157.1713376 298.7259162 305.3138516 337.4485824 441.8493633 356.0153872 309.7625057 238.3140158 1.37665811 0.502051794 0.659513613 1.253497052 1.281140979 1.415982947 1.854063689 1.493891939 1.299808174 1 7.896719992 -5.275690556 1.714334106 1.088648825 1.668866373 0.458878477 0.278059176 0.315973537 1.756184044 0.046377536 0.156955504 5.30E-06 5.275690556 0.580217547 (ac)S(ph)GDEMIFDPTMSK ddPTM_HeLa_CUDC101_4h_R1 17 SGDEMIFDPTMSK 13 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(0.999)GDEMIFDPT(0.001)MSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK ;;;;;;;;;;;;;;;; 140.07 0.0001015 1893422300 115998.7 103370.8 95018.5 87985.7 104250.3 100025.1 96653.2 95926.2 104681.9 108427.7 TRUE FALSE FALSE 102401.5082 106555.5318 100155.4875 91574.13715 96559.96306 98117.28787 100381.1463 106846.0509 100366.8678 107782.7672 0.950073104 0.988613807 0.929234702 0.849617611 0.89587571 0.910324446 0.931328346 0.99130922 0.931195871 1 16.71776701 -6.652145421 5.182847863 0.976592968 0.91290396 0.281884775 0.037814428 0.166538713 7.001218748 0.006070684 0.008616942 2.23E-07 6.652145421 -0.063689008 GTPLY(ph)GQPSWWGDDEVDEKR ddPTM_HeLa_CUDC101_4h_R1 1 GTPLYGQPSWWGDDEVDEKR 20 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 GT(0.432)PLY(0.568)GQPSWWGDDEVDEKR 98.077 0.00099776 6243200 449.58 438.33 524.44 488.45 680.83 517.99 612.13 569.15 515.33 385.27 TRUE FALSE FALSE 396.8809139 451.8344278 552.7928127 508.3711023 630.6065273 508.1102038 635.7400591 633.9397354 494.0878793 382.9783969 1.036301048 1.1797909 1.443404686 1.327414565 1.646585114 1.32673333 1.659989347 1.655288498 1.290119451 1 8.581119204 -6.651808939 0.837960504 1.001306729 1.576923996 0.631715466 0.141031216 0.148045398 0.208284703 0.020822947 0.036239482 2.23E-07 6.651808939 0.575617267 LPDAYER ddPTM_HeLa_CUDC101_4h_R1 1 LPDAYER 7 0 P11413-3;P11413;P11413-2 P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 108.09 0.0030079 0 3805.9 2904.8 3220.5 2938.2 3328 2746.3 2433.1 2819.3 2696.5 3212.3 FALSE FALSE TRUE 3359.778171 2994.293445 3394.609971 3058.032496 3082.50007 2693.918903 2526.945482 3140.237716 2585.349129 3193.193097 1.052168807 0.937711361 1.063076948 0.957672275 0.965334691 0.843644221 0.791353797 0.983416167 0.809643842 1 11.64078408 -5.599581865 1.864277265 1.01902854 0.866219267 0.062448436 0.087971896 0.17939253 1.247998594 0.008312673 0.020829282 2.51E-06 5.599581865 -0.152809273 PRPVS(ph)PSSLLDTAISEEAR ddPTM_HeLa_CUDC101_4h_R1 1 PRPVSPSSLLDTAISEEAR 19 1 A0A0B4J2F2;P57059 A0A0B4J2F2 LOC102724428;SIK1 Serine/threonine-protein kinase SIK1 1 0 PRPVS(0.968)PS(0.021)S(0.011)LLDTAISEEAR 75.017 0.0057203 2270400 584.1 373.7 354.84 268.97 374.77 289.72 227.75 355.36 554.94 374.44 TRUE FALSE FALSE 515.6326834 385.2132541 374.0237237 279.9397592 347.1239637 284.1940737 236.5343938 395.812746 532.0651383 372.2128142 1.38531685 1.034927438 1.004865253 0.752095974 0.932595414 0.763525765 0.635481597 1.063404404 1.42946486 1 8.539983914 -6.651734509 2.129074597 1.180446163 0.822008118 0.551956583 0.162995261 0.206383384 1.908541354 0.029070523 0.043206198 2.23E-07 6.651734509 -0.358438045 S(ph)SPVGGGPR ddPTM_HeLa_CUDC101_4h_R1 1 SSPVGGGPR 9 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 S(0.5)S(0.5)PVGGGPR 92.239 0.025517 69424000 3191.9 1630.8 2892.3 3326.8 2219 2206.1 2275.2 1201.4 3178 3650.5 TRUE FALSE FALSE 2817.750321 1681.043015 3048.666487 3462.481284 2055.308791 2164.022318 2362.955226 1338.16252 3047.001495 3628.786664 0.776499305 0.463252092 0.840133843 0.954170527 0.566390086 0.59634873 0.651169508 0.368763073 0.839675015 1 11.82527153 -6.651035764 0.086450002 1.444234799 2.26E-17 0.402699525 0.153801537 12.42186997 0.605314033 4.234471674 5.584930594 2.23E-07 6.651035764 -1.444234799 S(ph)AEPAEALVLACK ddPTM_HeLa_CUDC101_4h_R1 1 SAEPAEALVLACK 13 0 Q96CW6 Q96CW6 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS 1 0 S(1)AEPAEALVLACK 135.81 0.00089931 2981700 1281.3 1118.8 901.72 788.94 990.71 940.3 906.63 1101.9 885.52 965.5 TRUE FALSE FALSE 1131.107956 1153.268902 950.4697108 821.1163833 917.6272971 922.3653441 941.5990228 1227.335842 849.0184908 959.7571631 1.178535571 1.20162573 0.990323123 0.855545981 0.956103619 0.961040334 0.981080485 1.278798314 0.88461803 1 9.906525612 -6.649724954 24.3856124 1.095496448 0.99192202 0.028077616 0.132288184 10.21479792 2182.818889 0.01967647 0.02782673 2.24E-07 6.649724954 -0.103574428 LPEADDIQYPSMLLLTADHDDR ddPTM_HeLa_CUDC101_4h_R1 1 LPEADDIQYPSMLLLTADHDDR 22 0 A0A499FJL1;P48147 A0A499FJL1 PREP Prolyl endopeptidase 0 0 126.9 3.59E-07 2643700 421.77 528.01 720.49 506.31 530.08 569.46 346.73 471.31 568.79 670.17 FALSE FALSE TRUE 372.33076 544.2773623 759.4418688 526.9595103 490.9770545 558.5984993 360.1034922 524.9620253 545.3442355 666.183799 0.558900953 0.817007803 1.139988498 0.791012197 0.736999391 0.838505079 0.540546757 0.788013797 0.818609273 1 9.379776459 -4.788994585 24.98986916 0.812781517 0.664280106 0.150177804 0.156243684 370.5180626 336023.6619 0.027649516 0.082975353 1.63E-05 4.788994585 -0.148501411 RPDHSGGS(ph)PSPPTSEPAR ddPTM_HeLa_CUDC101_4h_R1 2 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 RPDHS(0.104)GGS(0.888)PS(0.007)PPTSEPAR;RPDHS(0.024)GGS(0.796)PS(0.18)PPTSEPAR ; 117.22 7.91E-05 43734000 2327.3 1670.17 1792.12 1601.1 1960.59 1792.05 1440.9 1901.21 2086.22 1717.09 TRUE FALSE FALSE 2054.497422 1721.625958 1889.007428 1666.399779 1815.961182 1757.869632 1496.475996 2117.636061 2000.225129 1706.876672 1.203658973 1.008641096 1.10670411 0.976285988 1.063908841 1.029875011 0.876733521 1.240649718 1.171862713 1 10.73714311 -6.649581645 1.964896319 1.093933137 1.031723562 0.064728826 0.103758223 0.781760817 6.15018292 0.018308573 0.027447178 2.24E-07 6.649581645 -0.062209575 LSAFPEPPEDGTLLS(ph)EAK ddPTM_HeLa_CUDC101_4h_R1 1 LSAFPEPPEDGTLLSEAK 18 0 Q9UPN4-3;Q9UPN4-2;I3L2J8;Q9UPN4 Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa 1 0 LSAFPEPPEDGT(0.025)LLS(0.975)EAK 105.77 0.00037052 0 833.8 598.04 918.61 742.51 965.5 1080.5 746.03 879.67 822.89 642.21 TRUE FALSE FALSE 736.063228 616.4649035 968.2728352 772.7927672 894.2769885 1059.891263 774.804627 979.8080771 788.9701259 638.3901064 1.152999115 0.965655478 1.516741606 1.210533747 1.400831529 1.660256405 1.213685205 1.534810874 1.235874613 1 9.318294483 -6.648681196 0.800785228 1.050431075 1.452867531 0.420730529 0.167415016 0.327678768 0.421770529 0.031490898 0.055654138 2.25E-07 6.648681196 0.402436456 SKS(ph)VPGLNVDMEEEEEEEDIDHLVK ddPTM_HeLa_CUDC101_4h_R1 2 SKSVPGLNVDMEEEEEEEDIDHLVK 25 1 Q96C24-2;Q96C24 Q96C24-2 SYTL4 Synaptotagmin-like protein 4 1 0 S(0.197)KS(0.803)VPGLNVDMEEEEEEEDIDHLVK;S(0.285)KS(0.715)VPGLNVDMEEEEEEEDIDHLVK ; 87.025 1.66E-05 10922000 1956.48 1631.43 1852.39 2096.33 2044.25 2001.43 2030.54 1702.05 1555.52 1797.21 TRUE FALSE FALSE 1727.14438 1681.692425 1952.535807 2181.827399 1893.44975 1963.256057 2108.858608 1895.804492 1491.400807 1786.520115 0.966764586 0.941322972 1.092926853 1.221272226 1.059853586 1.098927485 1.180428135 1.061171647 0.834807733 1 10.80293644 -6.647702864 5.479765526 0.980869109 1.125476324 0.619116429 0.067088725 0.088417776 3.942118581 0.007340175 0.010413713 2.25E-07 6.647702864 0.144607214 S(ph)GAEVEAGDAAER ddPTM_HeLa_CUDC101_4h_R1 1 SGAEVEAGDAAER 13 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67;Q8IY67-3;K7EKR9 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 S(1)GAEVEAGDAAER 195.94 2.02E-16 16406000 446.68 363.22 409.75 460.33 408.71 516.78 530.45 259.36 510.57 381.5 TRUE FALSE FALSE 394.3208475 374.4103777 431.9023244 479.1042471 378.5602776 506.9232825 550.9096342 288.884494 489.5240885 379.230821 1.039791139 0.987288893 1.138890355 1.263357883 0.998231833 1.336714355 1.452702691 0.761764282 1.290834134 1 8.56693241 -6.646654724 4.817176211 1.017137683 1.181049122 0 0.19772044 0.280935161 10.74436506 0.026048163 0.037040466 2.26E-07 6.646654724 0.163911439 DVT(ph)PPPETEVVLIK ddPTM_HeLa_CUDC101_4h_R1 3 DVTPPPETEVVLIK 14 0 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DVT(1)PPPETEVVLIK;DVT(1)PPPETEVVLIK;DVT(1)PPPETEVVLIK ;; 180.7 7.15E-09 831971000 10615.5 8258.7 7851.6 7650 8363.6 8773 7829.3 6617.4 9629.6 8109.1 TRUE FALSE FALSE 9371.167182 8513.140758 8276.081246 7962.000066 7746.633891 8605.669642 8131.278724 7370.698068 9232.663812 8060.866713 1.162550817 1.056107372 1.026698684 0.987734986 0.961017489 1.067586148 1.008735042 0.914380343 1.145368624 1 12.97671925 -6.646301461 2.713826508 1.077742596 0.992764406 0.424899313 0.055809281 0.298987629 4.473755322 0.011337437 0.016549235 2.26E-07 6.646301461 -0.084978191 LPFPIIDDR ddPTM_HeLa_CUDC101_4h_R1 2 LPFPIIDDR 9 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 ; ; 162.25 0.00028907 78164000 4275.3 3494.9 2781.6 3059.2 3378.8 3112.9 3048.2 2846 3133.7 3181.5 FALSE FALSE TRUE 3774.155815 3602.573727 2931.98171 3183.967399 3129.552656 3053.526619 3165.770095 3169.977136 3004.52756 3162.576297 1.193380163 1.139126266 0.927086475 1.006763822 0.989557994 0.96551872 1.001009872 1.00234013 0.95002532 1 11.62688457 -6.766002312 24.99990389 1.097455545 0.983621883 0.253602839 0.068497254 98.43518645 539318.0916 0.012275283 0.016436258 1.71E-07 6.766002312 -0.113833662 LPGDAAASSSAVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 LPGDAAASSSAVKK 14 1 F5H148;Q9NYV6;H3BMT1;Q9NYV6-2 F5H148 RRN3 RNA polymerase I-specific transcription initiation factor RRN3 0 1 LPGDAAASSSAVK(1)K 93.011 0.022829 1598600 623.02 814.9 748.1 665.1 1026.3 767.4 564.4 702.77 736.78 563.66 FALSE TRUE FALSE 549.99054 840.0061031 788.5445489 692.2256528 950.5918937 752.7631236 586.1690971 782.7704961 706.4096166 560.3073253 0.981587274 1.499188151 1.407342923 1.235439234 1.696554464 1.343482567 1.046156405 1.39703777 1.260753848 1 9.130074544 -7.272965911 24.78488541 0.991305088 1.369406927 0.32861572 0.179430847 351.8020805 756459.7141 0.026813308 0.030802984 5.33E-08 7.272965911 0.378101839 LPGEGNAGLLGLGPEAAAPGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 LPGEGNAGLLGLGPEAAAPGKR 22 1 P25440-2;P25440;A0A0G2JK44;A0A140T9E9;H0Y6K2;A0A0G2JHL0;A0A140T9V2;A0A140T9F7;U3KQA6;E9PIQ3;E9PKQ9;A0A140T9X8;H0Y799 P25440-2 BRD2 Bromodomain-containing protein 2 0 1 LPGEGNAGLLGLGPEAAAPGK(1)R 195.92 1.76E-21 273560 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 LEEPTPAPSTSYS(ph)PQADSLR ddPTM_HeLa_CUDC101_4h_R1 1 LEEPTPAPSTSYSPQADSLR 20 0 G3V1L9;Q07157 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 LEEPTPAPS(0.168)T(0.168)S(0.168)Y(0.078)S(0.417)PQADSLR 106.44 0.00020599 22111000 2403.9 1861.6 1710.4 1650.7 1700.6 1657.3 1524.6 1455.5 1994.5 2083.1 TRUE FALSE FALSE 2122.118486 1918.953689 1802.869398 1718.022681 1575.150126 1625.689764 1583.404333 1621.188237 1912.285866 2070.709629 1.024826686 0.926713076 0.870652926 0.829678221 0.760681316 0.785088233 0.764667489 0.782914328 0.923493009 1 11.01590955 -6.645514177 1.228633738 1.012899464 0.774420364 0.874192299 0.03295352 0.048496724 0.146987999 0.003410348 0.005454415 2.26E-07 6.645514177 -0.2384791 LPIGDVATQYFADRDMFCAGR ddPTM_HeLa_CUDC101_4h_R1 2 LPIGDVATQYFADRDMFCAGR 21 1 Q99832-4;Q99832-3;Q99832;Q99832-2 Q99832-4 CCT7 T-complex protein 1 subunit eta 0 0 ; ; 111.58 2.69E-05 24278000 757.08 904.88 954.85 846.76 725.59 716.25 881.79 806.09 766.64 1130.23 FALSE FALSE TRUE 668.3362301 932.7582803 1006.472079 881.2945328 672.0646713 702.5887246 915.8009357 897.8520273 735.0387747 1123.507342 0.594865921 0.830220013 0.895830443 0.784413684 0.598184495 0.625353034 0.815126792 0.79915101 0.654235845 1 10.13379384 -9.531594749 1.273826294 1.000882445 0.727893789 0 0.145080337 0.337362635 0.975173464 0.080110433 0.018876324 2.94E-10 9.531594749 -0.272988656 GDS(ph)ESEEDEDLEVPVPS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 GDSESEEDEDLEVPVPSR 18 0 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 2 0 GDS(0.958)ES(0.042)EEDEDLEVPVPS(1)R;GDS(0.939)ES(0.067)EEDEDLEVPVPS(0.994)R ; 178.1 7.43E-07 81312000 3766.7 3023.7 2733.1 2803.6 2783.9 2718.5 2747.8 2853.4 3350.8 2879.2 TRUE FALSE FALSE 3325.173136 3116.856613 2880.859653 2917.942926 2578.537243 2666.649142 2853.783566 3178.219522 3212.678606 2862.07439 1.161805279 1.089020126 1.006563513 1.019520295 0.900932992 0.931719018 0.997103212 1.110460138 1.122500036 1 11.48284546 -6.645417342 3.643220558 1.079476474 0.985885174 0.349641496 0.064861603 0.266080957 6.812003168 0.012834302 0.018420264 2.26E-07 6.645417342 -0.0935913 FNVS(ph)TGNTRAALAT(ph)LER ddPTM_HeLa_CUDC101_4h_R1 2 FNVSTGNTRAALATLER 17 1 C9JVJ9;Q8N434-2;Q8N434 C9JVJ9 SVOPL Putative transporter SVOPL 2 0 FNVS(1)TGNTRAALAT(1)LER;FNVS(0.976)T(0.022)GNT(0.002)RAALAT(1)LER ; 130.64 0.0022473 662607000 3742.9 3492.6 2987.2 2693 3578.9 3645.3 2744.5 2831.8 3317.1 3448.1 TRUE FALSE FALSE 3304.162936 3600.202866 3148.697068 2802.83218 3314.891677 3575.771976 2850.356284 3154.160665 3180.367734 3427.590548 0.963989978 1.050359667 0.91863279 0.817726663 0.967120089 1.043231951 0.831591827 0.920226795 0.927872711 1 11.74297906 -6.644345742 11.84769616 0.98756107 0.915918358 0.207312271 0.066195756 0.467731322 46.33291257 0.009960338 0.014086295 2.27E-07 6.644345742 -0.071642712 Y(ph)ATPQVIQAPGPR ddPTM_HeLa_CUDC101_4h_R1 2 YATPQVIQAPGPR 13 0 A0A5F9ZHD0;A0A5F9ZHP4;C9J1X3;A0A5F9ZI29;A0A5F9ZGX5;A0A5F9ZHJ2;A0A499FJ16;Q07912;Q07912-3 A0A5F9ZHD0 TNK2 Activated CDC42 kinase 1 1 0 Y(0.998)AT(0.002)PQVIQAPGPR;Y(0.999)AT(0.001)PQVIQAPGPR ; 120.63 0.012627 79706000 3194.4 2726.6 2331.9 2105.4 2415.9 2195 2183.9 2499.5 2534.6 2777.3 TRUE FALSE FALSE 2819.957274 2810.603314 2457.969568 2191.267312 2237.68387 2153.134032 2268.133755 2784.032977 2430.122715 2760.780496 1.0214348 1.018046642 0.890316913 0.793712979 0.810525818 0.779900479 0.821555266 1.00842243 0.880230326 1 11.43086047 -6.643762586 3.702834245 1.011133172 0.836592985 0.413757782 0.072936603 0.103407399 2.718482698 0.009365742 0.013437277 2.27E-07 6.643762586 -0.174540187 LPLQLDDAVRPEAEGEEEGR ddPTM_HeLa_CUDC101_4h_R1 1 LPLQLDDAVRPEAEGEEEGR 20 1 P14868-2;P14868;C9J7S3;C9JLC1 P14868-2 DARS "Aspartate--tRNA ligase, cytoplasmic" 0 0 112.01 0.00015131 6061200 397.26 422.26 328.84 345.2 524.51 456.96 395.35 339.17 475.83 495.65 FALSE FALSE TRUE 350.693785 435.2693301 346.6180851 359.2787481 485.8179423 448.2442493 410.5987819 377.7797418 456.216086 492.7018518 0.711776876 0.883433518 0.703504734 0.729201132 0.986028245 0.909767738 0.833361556 0.766751212 0.925947577 1 8.944571084 -9.533308514 1.29470877 0.999949951 0.807457905 0.287998464 0.089925479 0.391634133 1.176074742 0.065990121 0.015765914 2.93E-10 9.533308514 -0.192492046 GHEEGFLNNS(ph)GEFLFNK ddPTM_HeLa_CUDC101_4h_R1 2 GHEEGFLNNSGEFLFNK 17 0 Q16659 Q16659 MAPK6 Mitogen-activated protein kinase 6 1 0 GHEEGFLNNS(1)GEFLFNK;GHEEGFLNNS(1)GEFLFNK ; 156.15 6.82E-08 4414300 5018.7 4358.4 3882.3 3722.9 4477.1 4251 4193.1 3204.51 4366.5 4251.6 TRUE FALSE FALSE 4430.415594 4492.677138 4092.188881 3874.735954 4146.833253 4169.919258 4354.829272 3569.298465 4186.511022 4226.311294 1.048293721 1.063025609 0.9682649 0.91681272 0.981194466 0.986656914 1.030409018 0.844542254 0.99058274 1 12.04518332 -6.642214083 7.117676621 1.026372568 0.958221351 0.325110512 0.050002318 0.204090578 11.99362933 0.007560677 0.010703048 2.28E-07 6.642214083 -0.068151218 LSGKPGVDDSWPTS(ph)DDEDLNFDTK ddPTM_HeLa_CUDC101_4h_R1 1 LSGKPGVDDSWPTSDDEDLNFDTK 24 1 Q9UPS8;E7ESJ3 Q9UPS8 ANKRD26 Ankyrin repeat domain-containing protein 26 1 0 LSGKPGVDDSWPT(0.477)S(0.523)DDEDLNFDTK 86.577 0.00013865 0 1540.8 1131.7 1284.2 971.41 1420.4 1125.9 845.13 1271.9 1482.1 1324.2 TRUE FALSE FALSE 1360.18976 1166.566336 1353.627736 1011.028299 1315.619922 1104.425333 877.7269472 1416.687955 1421.007211 1316.3236 1.033324754 0.886230662 1.02833964 0.76806972 0.999465422 0.839022664 0.666801801 1.076245959 1.079527262 1 10.36229848 -6.641754024 1.077141309 1.014951196 0.862505648 0.225784824 0.117693124 0.472400577 1.096613445 0.019852387 0.032645851 2.28E-07 6.641754024 -0.152445548 RFS(ph)SGGEEDDFDR ddPTM_HeLa_CUDC101_4h_R1 2 RFSSGGEEDDFDR 13 1 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 RFS(0.938)S(0.062)GGEEDDFDR;RFS(0.995)S(0.005)GGEEDDFDR ; 142.95 0.0013373 37974000 1110.48 1274.8 1636.62 1719.68 1740.79 1902.49 1698.39 1345.32 2175.5 2091.9 TRUE FALSE FALSE 980.3112178 1314.075077 1725.100628 1789.815983 1612.37539 1866.203173 1763.897471 1498.465791 2085.824969 2079.457286 0.471426475 0.631931748 0.829591759 0.860713031 0.775382789 0.897447226 0.848248956 0.720604266 1.003062185 1 11.02199134 -6.641533523 15.59226365 0.734304652 0.826366677 0 0.155860879 2.385570138 311.2955597 0.032313809 0.045698557 2.28E-07 6.641533523 0.092062024 RFS(ph)PPSSSLQPGK ddPTM_HeLa_CUDC101_4h_R1 2 RFSPPSSSLQPGK 13 1 I3L354;A0A2R8Y7Z3;A0A0D9SEN7;I3L0L0;Q13950-3;Q13950-2;Q13950 I3L354 RUNX2 Runt-related transcription factor 2 1 0 RFS(1)PPSSSLQPGK;RFS(1)PPSSSLQPGK ; 102.5 0.00063499 0 2463 2149.82 1767.84 1754.84 1811.31 1596.6 1958.1 1560.33 2060.48 2139.56 TRUE FALSE FALSE 2174.290874 2216.053406 1863.414778 1826.40996 1677.69327 1566.147515 2033.624573 1737.95166 1975.546142 2126.833802 1.022313484 1.041949495 0.876144989 0.858745972 0.788821989 0.736375129 0.956174653 0.817154429 0.928867192 1 11.05449159 -6.641152614 3.943250765 1.013160368 0.833383401 0.630165701 0.05998637 0.088718661 2.575416499 0.008490901 0.012156504 2.28E-07 6.641152614 -0.179776967 GS(ph)PGGYLGAK ddPTM_HeLa_CUDC101_4h_R1 2 GSPGGYLGAK 10 0 O60551 O60551 NMT2 Glycylpeptide N-tetradecanoyltransferase 2 1 0 GS(1)PGGYLGAK;GS(1)PGGYLGAK ; 131.42 0.0021282 33730000 7587.5 5752.7 5633.4 5100.7 4730.5 5578.3 5026.9 4661 6116.2 6540.6 TRUE FALSE FALSE 6698.104752 5929.933868 5937.958644 5308.728593 4381.540439 5471.903222 5220.789217 5191.5894 5864.087647 6501.69622 1.030208814 0.91205951 0.913293769 0.816514401 0.673907284 0.84161164 0.802988796 0.798497688 0.901931965 1 12.66660044 -6.639868171 1.415237373 1.013550957 0.783027836 0.653687445 0.058536734 0.112062441 0.452830968 0.008176292 0.012816184 2.29E-07 6.639868171 -0.230523122 SDKS(ph)PDLAPTPAPQSTPR ddPTM_HeLa_CUDC101_4h_R1 4 SDKSPDLAPTPAPQSTPR 18 1 F8WAE5;Q9BY44-2;Q9BY44-4;Q9BY44-3;Q9BY44 F8WAE5 EIF2A "Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed" 1 0 S(0.21)DKS(0.776)PDLAPT(0.003)PAPQS(0.007)T(0.002)PR;S(0.236)DKS(0.763)PDLAPT(0.001)PAPQSTPR;S(0.017)DKS(0.983)PDLAPTPAPQSTPR;S(0.071)DKS(0.929)PDLAPTPAPQSTPR ;;; 171.33 1.35E-06 1189690000 15459.31 13281.51 14452.08 14918.85 15998.24 14421.81 14267.45 15422.41 15290.4 15545.43 TRUE FALSE FALSE 13647.19312 13690.69758 15233.40316 15527.30519 14818.08171 14146.738 14817.75033 17178.03481 14660.12324 15452.96509 0.883143982 0.885959264 0.985791599 1.004810733 0.958915109 0.91547078 0.958893665 1.111633574 0.948693222 1 13.91559607 -6.638577448 20.68379677 0.938714177 0.983862109 0.199217077 0.056937388 4.780372158 835.9093083 0.010454797 0.014785315 2.30E-07 6.638577448 0.045147932 ELEDS(ph)PQENVSVTEIIKPCDDPK ddPTM_HeLa_CUDC101_4h_R1 1 ELEDSPQENVSVTEIIKPCDDPK 23 1 Q5F1R6;Q5F1R6-3;Q5F1R6-2;A0A2R8Y534;A0A2R8Y4Q0 Q5F1R6 DNAJC21 DnaJ homolog subfamily C member 21 1 0 ELEDS(0.999)PQENVS(0.001)VTEIIKPCDDPK 158.65 5.51E-08 33559000 3557.4 2960.6 2784.7 2359.6 2615.7 2796.7 2732.5 1920 3426.5 3332.8 TRUE FALSE FALSE 3140.406965 3051.812577 2935.249305 2455.834687 2422.745022 2743.357607 2837.89344 2138.565039 3285.25822 3312.976357 0.94791107 0.92116944 0.885985588 0.741277456 0.73128956 0.828064348 0.856599364 0.645511712 0.991633463 1 11.69391219 -6.637534568 1.511219231 0.975974239 0.766959714 0.742112233 0.057119797 0.142991295 0.660247623 0.009780119 0.015203122 2.30E-07 6.637534568 -0.209014524 SSFYSGGWQEGSSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SSFYSGGWQEGSSSPR 16 0 D3DPQ1;Q96BR9-2;Q96BR9 D3DPQ1 ZBTB8A Zinc finger and BTB domain-containing protein 8A 1 0 SSFYSGGWQEGSS(0.003)S(0.996)PR;SSFYSGGWQEGS(0.01)S(0.094)S(0.896)PR ; 240.34 1.03E-43 44482000 5192.4 4192.7 3788.7 2997.6 3601.2 3700 3402.7 3365.7 4302.8 4546.9 TRUE FALSE FALSE 4583.754743 4321.872117 3993.528582 3119.855085 3335.546651 3629.428665 3533.943279 3748.837683 4125.436763 4519.854837 1.014137602 0.956197107 0.883552399 0.690255594 0.7379765 0.802996732 0.781870969 0.829415505 0.912736562 1 12.14206072 -6.637519143 2.481039995 1.005112386 0.769939121 0.786739669 0.04841906 0.063336704 0.793982179 0.006329294 0.009329879 2.30E-07 6.637519143 -0.235173265 GESAADS(ph)DGWDSAPSDLR ddPTM_HeLa_CUDC101_4h_R1 4 GESAADSDGWDSAPSDLR 18 0 I3L4Q4;Q9BUL5-4;Q9BUL5;A0A087WVQ2;I3L0Y2;Q9BUL5-2 I3L4Q4 PHF23 PHD finger protein 23 1 0 GESAADS(0.985)DGWDS(0.015)APSDLR;GESAADS(1)DGWDSAPSDLR;GESAADS(0.996)DGWDS(0.004)APSDLR;GESAADS(1)DGWDSAPSDLR ;;; 242.1 6.96E-71 8592100 4916.13 3835.12 3237.36 3153.06 3649.56 3359.09 3199.73 2614.08 4322.29 3400.7 TRUE FALSE FALSE 4339.868694 3953.275501 3412.381474 3281.655415 3380.33923 3295.020955 3323.144658 2911.656301 4144.123377 3380.472485 1.283805359 1.169444662 1.00943921 0.970768267 0.999960581 0.974722016 0.983041475 0.861316373 1.225900638 1 11.72300919 -6.63711796 4.275030131 1.140246836 0.964840825 0.61394422 0.078225136 0.185117205 6.05490176 0.01779691 0.025421244 2.31E-07 6.63711796 -0.175406012 NSPLDCGS(ph)ASPNK ddPTM_HeLa_CUDC101_4h_R1 1 NSPLDCGSASPNK 13 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 NSPLDCGS(0.707)AS(0.293)PNK 110.25 0.0045778 64593000 6818.2 4399.7 5210.8 4770.6 4455 4805.5 4228.7 4677.2 5502.5 5343.4 TRUE FALSE FALSE 6018.980932 4535.249542 5492.51161 4965.165688 4126.363526 4713.843094 4391.802376 5209.633542 5275.684621 5311.617219 1.133172946 0.853835914 1.034056368 0.934774756 0.776856342 0.887459111 0.826829607 0.980799882 0.993235093 1 12.37493547 -6.636906157 1.166453118 1.058011535 0.871541312 0.303605527 0.08504244 0.301451924 0.822135494 0.016108469 0.026132628 2.31E-07 6.636906157 -0.186470223 AGMSSNQS(ph)ISS(ph)PVLDAVPR ddPTM_HeLa_CUDC101_4h_R1 1 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMS(0.001)S(0.001)NQS(0.896)IS(0.361)S(0.742)PVLDAVPR 136.35 0.00045513 23395000 2210.9 1831.4 1542.6 1208 1534.6 1550.7 1542.1 1536 1635.5 1803.1 TRUE FALSE FALSE 1951.741654 1887.823263 1625.997622 1257.267461 1421.395615 1521.122981 1601.579314 1710.852031 1568.083998 1792.375081 1.088913629 1.053252348 0.907174865 0.701453326 0.793023531 0.848663317 0.893551428 0.954516747 0.874863757 1 10.80765686 -6.636865752 4.205506057 1.043866652 0.836533743 0.434641801 0.084078698 0.101891369 3.25676341 0.011515419 0.016458899 2.31E-07 6.636865752 -0.20733291 SSIT(ph)EPEGPNGPNIQK ddPTM_HeLa_CUDC101_4h_R1 1 SSITEPEGPNGPNIQK 16 0 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 S(0.014)S(0.052)IT(0.934)EPEGPNGPNIQK 191.19 1.10E-10 25176000 3866.2 2628.5 2867 2685.6 2208.4 2186.6 2246.6 2614.5 2599.2 3372.5 TRUE FALSE FALSE 3413.009897 2709.480969 3021.998692 2795.130376 2045.490732 2144.894248 2333.252115 2912.124112 2492.059876 3352.44022 1.01806734 0.808211569 0.901432537 0.833759946 0.610149801 0.639800893 0.695986196 0.868658028 0.743356991 1 11.71099589 -6.636532021 0.992493354 1.009788356 0.705443787 0.216356453 0.118128815 0.199467435 0.392750403 0.016038545 0.026954308 2.31E-07 6.636532021 -0.304344569 PSQLSTPAASPS(ph)ASEPR ddPTM_HeLa_CUDC101_4h_R1 1 PSQLSTPAASPSASEPR 17 0 K7EL01;Q5XUX1;Q5XUX1-2 K7EL01 FBXW9 F-box/WD repeat-containing protein 9 1 0 PSQLST(0.003)PAAS(0.308)PS(0.688)AS(0.001)EPR 173.09 2.23E-12 0 3695.9 2968.9 2661 2561.7 2685.8 2453.8 2225.6 2175.9 2284.5 3533.7 TRUE FALSE FALSE 3262.672205 3060.36829 2804.861709 2666.177199 2487.673885 2406.997853 2311.442138 2423.595661 2190.331943 3512.681395 0.928826682 0.871234236 0.798495905 0.759014809 0.708197985 0.685230906 0.658027836 0.689956016 0.623549846 1 11.77835701 -6.636521151 0.615788894 0.985735098 0.658478823 0.063012534 0.114800251 0.055539246 0.043158085 0.003831865 0.007416899 2.31E-07 6.636521151 -0.327256275 LPQFDDDADTGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 LPQFDDDADTGKK 13 1 O43257 O43257 ZNHIT1 Zinc finger HIT domain-containing protein 1 0 1 LPQFDDDADTGK(1)K 132.06 0.0012471 760400 477.24 542.52 533.61 714.45 671.67 595.3 561.1 799.49 307.01 232.81 FALSE TRUE FALSE 421.2986506 559.2343982 562.4585707 743.5883591 622.1222423 583.9456443 582.741815 890.50071 294.3549179 231.4252358 1.820452507 2.41647976 2.43041157 3.213082431 2.688221275 2.523258289 2.518056482 3.847898035 1.271922299 1 7.854402381 -7.473913074 0.412621894 0.948318589 3.11494072 0.775386927 0.380094834 0.307346958 0.141999808 0.224873359 0.215455324 3.36E-08 7.473913074 2.166622131 DQNES(ph)LDEEMFYK ddPTM_HeLa_CUDC101_4h_R1 2 DQNESLDEEMFYK 13 0 Q96AC1;Q96AC1-3;A0A0U1RRM8;H0YJ34 Q96AC1 FERMT2 Fermitin family homolog 2 1 0 DQNES(1)LDEEMFYK;DQNES(1)LDEEMFYK ; 142.91 0.00065508 36118000 7498.3 5367.3 4801.6 4880.3 5414.3 5299.9 4877.8 3497.5 5603.8 4491 TRUE FALSE FALSE 6619.360641 5532.660151 5061.18902 5079.339728 5014.897876 5198.813238 5065.93838 3895.641263 5372.808992 4464.287332 1.482736246 1.239315425 1.13370593 1.137771687 1.123336717 1.164533743 1.134769786 0.872623327 1.203508778 1 12.12421417 -6.636194407 3.529612928 1.235070278 1.098357252 0.206694433 0.132873635 0.447720068 10.88286814 0.031076544 0.044767055 2.31E-07 6.636194407 -0.136713026 GYS(ph)FTTTAER ddPTM_HeLa_CUDC101_4h_R1 2 GYSFTTTAER 10 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 GYS(0.626)FT(0.181)T(0.193)TAER;GYS(0.99)FT(0.003)T(0.007)TAER ; 141.89 0.0010782 52798000 4077.9 2795.8 2854.2 2832.6 2360.55 2838.5 2646.59 2462.1 3039.2 3111.3 TRUE FALSE FALSE 3599.894744 2881.935284 3008.506685 2948.125672 2186.416929 2784.360342 2748.669863 2742.375512 2913.92289 3092.793849 1.163962074 0.931822625 0.972747242 0.953224112 0.706939109 0.900273499 0.888733617 0.88669845 0.94216525 1 11.59469496 -6.635761429 1.433983658 1.074265745 0.859706648 0.350991484 0.086825686 0.226135464 0.938387013 0.015445935 0.024211312 2.31E-07 6.635761429 -0.214559097 NSSTDQGS(ph)DEEGSLQKEQESAMDK ddPTM_HeLa_CUDC101_4h_R1 2 NSSTDQGSDEEGSLQKEQESAMDK 24 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 NS(0.002)S(0.007)T(0.008)DQGS(0.645)DEEGS(0.337)LQKEQES(0.002)AMDK;NSS(0.006)T(0.019)DQGS(0.964)DEEGS(0.011)LQKEQESAMDK ; 97.128 8.73E-06 37402000 2573.2 1651.51 2010.98 1546.38 1826.92 1637.07 1531.2 1403.61 2325.1 2198.84 TRUE FALSE FALSE 2271.573397 1702.391066 2119.699662 1609.44806 1692.151751 1605.845617 1590.258897 1563.391289 2229.258394 2185.761202 1.039259639 0.778855011 0.969776415 0.73633298 0.774170458 0.734684839 0.727553813 0.715261707 1.019900249 1 11.09392008 -6.633321268 0.868044308 1.020409281 0.724323024 0.757359474 0.064546925 0.171612938 0.25878196 0.012547336 0.021888834 2.33E-07 6.633321268 -0.296086257 VKAPVHFVEPLS(ph)PTGVAGHR ddPTM_HeLa_CUDC101_4h_R1 2 VKAPVHFVEPLSPTGVAGHR 20 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 VKAPVHFVEPLS(0.859)PT(0.141)GVAGHR;VKAPVHFVEPLS(0.89)PT(0.11)GVAGHR ; 82.216 0.0014709 62208000 4336.3 4194.8 4688.5 5574.6 5996 5185 4898.3 5683.3 4708 4424.7 TRUE FALSE FALSE 3828.005487 4324.036816 4941.974492 5801.956283 5553.687026 5086.104764 5087.229072 6330.263899 4513.934247 4398.381688 0.87032135 0.983097221 1.123589275 1.319111595 1.262666003 1.156358207 1.156613826 1.439225685 1.026271608 1 12.10275709 -6.632782847 2.683786063 0.938693875 1.253560693 0.716700208 0.086965728 0.102341178 1.497567527 0.014258586 0.020922779 2.33E-07 6.632782847 0.314866817 TMIIS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 4 TMIISPER 8 0 O75533;B4DGZ4;A0A494C1M2;O75533-2 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 TMIIS(1)PER;T(0.028)MIIS(0.972)PER;TMIIS(1)PER;T(0.293)MIIS(0.707)PER ;;; 127.51 0.0027938 135903200 21389.1 16155.2 14527.7 13971.9 14759.2 15720.2 13913.4 11553 15546 15753.2 TRUE FALSE FALSE 18881.90212 16652.92256 15313.11141 14541.73447 13670.44322 15420.36338 14450.0445 12868.14682 14905.1873 15659.49927 1.205779431 1.063439021 0.977880017 0.928620656 0.872980865 0.984729021 0.922765425 0.821747018 0.95183039 1 13.93475046 -6.631280938 2.397075429 1.098394662 0.910390555 0.423342123 0.076346331 0.177922571 2.081757976 0.013938789 0.020651067 2.34E-07 6.631280938 -0.188004107 T(ph)ASAPNLAETEKETAEHLDLAGASSR ddPTM_HeLa_CUDC101_4h_R1 2 TASAPNLAETEKETAEHLDLAGASSR 26 1 Q86W92-4;Q86W92;Q86W92-3;F5GZP6 Q86W92-4 PPFIBP1 Liprin-beta-1 1 0 T(0.5)AS(0.5)APNLAET(0.001)EKETAEHLDLAGASSR;T(0.497)AS(0.497)APNLAET(0.007)EKETAEHLDLAGASSR ; 57.496 0.0033708 16036300 4613.5 3892.4 2926.8 3356 3220.8 3383.8 2419 2834.8 3635.4 4169.3 TRUE FALSE FALSE 4072.712524 4012.32023 3085.031661 3492.872186 2983.208001 3319.259653 2512.30164 3157.502173 3485.547273 4144.500818 0.982678663 0.968106994 0.744367488 0.84277271 0.71979911 0.800882856 0.606177137 0.761853432 0.841005329 1 12.01698263 -6.629205727 1.025514392 0.997709199 0.718928928 0.568987278 0.079470794 0.144399367 0.303631796 0.010787162 0.018067249 2.35E-07 6.629205727 -0.278780272 VS(ph)GRTSPPLLDR ddPTM_HeLa_CUDC101_4h_R1 1 VSGRTSPPLLDR 12 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 VS(0.797)GRT(0.052)S(0.151)PPLLDR 73.9 0.026921 809730000 2820.6 3294.8 3109.9 3124.2 4623.7 3150.3 3144.5 4480.3 3126.4 2260.7 TRUE FALSE FALSE 2489.973544 3396.308883 3278.030601 3251.61838 4282.618863 3090.213276 3265.784418 4990.319242 2997.528469 2247.253256 1.108007536 1.511315591 1.458683214 1.446930101 1.905712608 1.375106819 1.453233813 2.220630554 1.333863222 1 11.133947 -6.629047894 0.423182981 0.971407424 1.833773885 0.437622028 0.252548808 0.559595453 0.220185709 0.090327339 0.189931874 2.35E-07 6.629047894 0.862366461 LAAAEETAVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 LAAAEETAVSPR 12 0 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 0 LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR ;;; 184.96 1.12E-10 911651000 7046.3 6002.5 5233.26 4905.74 5001.86 5265.93 4909.13 4953.04 6260.8 6373.82 TRUE FALSE FALSE 6220.343395 6187.42991 5516.185865 5105.817282 4632.882753 5165.491159 5098.476789 5516.874053 6002.727174 6335.908235 0.981760336 0.976565582 0.870622752 0.805854045 0.73121052 0.815272407 0.804695491 0.870731369 0.947413844 1 12.62933573 -6.627883487 2.323581466 0.991426476 0.802096611 0.840967242 0.034832626 0.068242129 0.750085253 0.005291805 0.007871014 2.36E-07 6.627883487 -0.189329865 RLTLT(ph)T(ph)S(ph)QS(ph)LPK ddPTM_HeLa_CUDC101_4h_R1 1 RLTLTTSQSLPK 12 1 Q9BYI3-2;Q9BYI3 Q9BYI3-2 FAM126A Hyccin 4 0 RLT(0.333)LT(0.859)T(0.904)S(0.904)QS(1)LPK 51.286 0.0033211 0 574.66 373.67 582.8 660.29 647.48 684.66 574.96 550.47 585.07 484.18 TRUE FALSE FALSE 507.2992259 385.1823298 614.3079309 687.2194802 599.7166904 671.6012512 597.1363998 613.1332797 560.953167 481.3000758 1.054018587 0.800295593 1.276351203 1.427839958 1.246034897 1.395389872 1.240673812 1.273910624 1.165495696 1 8.91079284 -6.626993957 8.175838803 1.009594804 1.31673045 0.688794057 0.100720717 0.086834719 6.177031704 0.013179779 0.018649134 2.36E-07 6.626993957 0.307135646 SVSS(ph)PTSSNTPTPTK ddPTM_HeLa_CUDC101_4h_R1 1 SVSSPTSSNTPTPTK 15 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 SVS(0.017)S(0.982)PTSSNTPTPTK 178.68 1.50E-07 26361000 9954.8 8364.2 8022.6 7224.7 8134.2 6972.5 6873 6463 9216.2 9838.5 TRUE FALSE FALSE 8787.913434 8621.891088 8456.326023 7519.354494 7534.156272 6839.511179 7138.093912 7198.721796 8836.304335 9779.980164 0.898561478 0.881585744 0.864656766 0.768851712 0.770365189 0.69933794 0.729867934 0.736067116 0.903509433 1 13.25561582 -6.626318977 0.374139038 0.99578186 0.678132848 0.863331725 0.03425573 0.214669837 0.068481114 0.012555962 0.026465249 2.36E-07 6.626318977 -0.317649012 SSPS(ph)TGSLDSGNESKEK ddPTM_HeLa_CUDC101_4h_R1 1 SSPSTGSLDSGNESKEK 17 1 A0A0U1RQT1;A0A087X1H5;Q15057 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 S(0.004)S(0.004)PS(0.522)T(0.44)GS(0.029)LDSGNESKEK 85.974 0.0050819 8682800 1361.3 970.16 1370.2 1551.1 1743.5 1601.3 1420.1 1395.4 1208.2 1054.6 TRUE FALSE FALSE 1201.730478 1000.04948 1444.277157 1614.360562 1614.885479 1570.75787 1474.873733 1554.246696 1158.397485 1048.327192 1.146331495 0.953947858 1.377696932 1.539939605 1.540440323 1.498346968 1.406883026 1.482596948 1.104996124 1 10.03387335 -6.626221775 4.729581227 1.06296198 1.488987539 0.91948059 0.06195172 0.048065637 1.825562202 0.011575627 0.016504266 2.36E-07 6.626221775 0.426025559 RAHT(ph)PTPGIYMGR ddPTM_HeLa_CUDC101_4h_R1 2 RAHTPTPGIYMGR 13 1 Q13595;Q13595-4;Q13595-3;Q13595-2 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 RAHT(0.999)PT(0.001)PGIYMGR;RAHT(0.89)PT(0.11)PGIYMGR ; 111.07 0.0034931 17319500 4799.3 4382.4 3829.3 3659.4 4309.1 3682.7 3469.5 4470.4 4355.5 4449.3 TRUE FALSE FALSE 4236.733329 4517.41655 4036.323541 3808.646149 3991.226278 3612.458633 3603.319777 4979.292266 4175.964446 4422.835366 0.957922459 1.02138474 0.912609945 0.861132245 0.902413485 0.816774384 0.814708095 1.125814518 0.944182657 1 12.11075583 -6.625200932 6.113210019 0.982518855 0.893587216 0.155111379 0.084329041 0.243603692 12.65343219 0.012401747 0.017587231 2.37E-07 6.625200932 -0.088931639 SSDYQFPSS(ph)PFTDTLK ddPTM_HeLa_CUDC101_4h_R1 4 SSDYQFPSSPFTDTLK 16 0 Q9UK61-3;Q9UK61 Q9UK61-3 FAM208A Protein FAM208A 1 0 SSDYQFPS(0.228)S(0.772)PFTDTLK;SSDYQFPS(0.093)S(0.46)PFT(0.444)DT(0.003)LK;SSDYQFPS(0.177)S(0.743)PFT(0.08)DT(0.001)LK;SSDYQFPS(0.186)S(0.699)PFT(0.102)DT(0.013)LK ;;; 195.38 3.38E-16 90067000 13387.7 9945.6 8786.9 8941.4 9068.9 8954.9 8578.9 5516.54 9980.5 12514.8 TRUE FALSE FALSE 11818.4141 10252.01215 9261.946393 9306.06894 8399.905315 8784.100202 8909.791047 6144.520615 9569.099566 12440.36141 0.950005688 0.82409279 0.744507823 0.748054549 0.67521393 0.706096866 0.716200338 0.493918176 0.769197875 1 13.60274078 -6.624593097 0.534915856 1.001785172 0.61028009 0.535638635 0.091682277 0.207265052 0.123722214 0.016091367 0.032731057 2.37E-07 6.624593097 -0.391505081 S(ph)VTWPEEGK ddPTM_HeLa_CUDC101_4h_R1 1 SVTWPEEGK 9 0 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 1 0 S(1)VTWPEEGK 125.68 0.0043296 5086900 1844.3 2042.8 1791.9 1683.9 2257.8 2354.7 1876.2 1086.3 2189.7 2057.2 TRUE FALSE FALSE 1628.11395 2105.736247 1888.775534 1752.57672 2091.246592 2309.788021 1948.565662 1209.960001 2099.439639 2044.963683 0.79615788 1.029718163 0.923623021 0.857020951 1.022632631 1.129500753 0.952860767 0.59167799 1.026639083 1 10.99785951 -6.624586406 0.005864393 1.82461337 2.63E-06 0.032205651 0.142812076 31880.85097 99.57947865 15333.21499 15645.17436 2.37E-07 6.624586406 -1.824610738 TLNMTTS(ph)PEEK ddPTM_HeLa_CUDC101_4h_R1 4 TLNMTTSPEEK 11 0 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 1 0 TLNMTT(0.078)S(0.922)PEEK;TLNMT(0.001)T(0.078)S(0.921)PEEK;TLNMT(0.064)T(0.215)S(0.721)PEEK;T(0.001)LNMT(0.175)T(0.175)S(0.649)PEEK ;;; 190.34 3.67E-11 764980000 23406.7 20655.6 18560.7 18827.2 21272.2 19060.8 18881.5 18393.4 19976.4 20040.2 TRUE FALSE FALSE 20663.00211 21291.97455 19564.14759 19595.05459 19702.99219 18697.247 19609.76578 20487.23031 19152.96434 19921 1.037247232 1.068820569 0.982086621 0.9836381 0.989056382 0.9385697 0.984376577 1.028423789 0.961445928 1 14.28200245 -6.624529901 20.5628733 1.022093312 0.982430738 0.184072949 0.032661954 3.196757961 637.0717281 0.004535765 0.006414544 2.37E-07 6.624529901 -0.039662574 KYQEDSDPERS(ph)DY(ph)EEQQLQKEEEAR ddPTM_HeLa_CUDC101_4h_R1 2 KYQEDSDPERSDYEEQQLQKEEEAR 25 3 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 2 0 KY(0.048)QEDS(0.34)DPERS(0.716)DY(0.896)EEQQLQKEEEAR;KY(0.04)QEDS(0.12)DPERS(0.859)DY(0.981)EEQQLQKEEEAR ; 54.235 0.005412 49526000 4422.4 3880.3 4256 4462.2 4704.5 4262.3 4776.7 4282.7 4416.3 4488.8 TRUE FALSE FALSE 3904.012976 3999.847444 4486.092234 4644.187803 4357.458408 4181.003729 4960.938919 4770.225257 4234.258245 4462.100418 0.874927189 0.896404623 1.005376799 1.04080755 0.97654871 0.937003504 1.111794548 1.069053766 0.948938358 1 12.12350727 -6.623626609 6.12034042 0.936088405 1.023828825 0.417167685 0.054265914 0.210623311 11.03089198 0.010583782 0.015009833 2.38E-07 6.623626609 0.08774042 VGGSS(ph)VDLHR ddPTM_HeLa_CUDC101_4h_R1 2 VGGSSVDLHR 10 0 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-19;O60716-4;O60716-6;O60716-11;O60716-13;O60716-21;O60716-24;O60716-9;O60716-17;O60716-16;O60716-10;O60716-23;O60716-15;O60716-18;O60716-12;O60716-22;O60716-20;O60716-14 O60716-5 CTNND1 Catenin delta-1 1 0 VGGS(0.204)S(0.796)VDLHR;VGGS(0.182)S(0.818)VDLHR ; 173.72 1.50E-07 58473000 9797.4 8189.2 7319.8 7102.1 8004.4 7266.5 6849.5 7378.1 8281.3 8143.2 TRUE FALSE FALSE 8648.963624 8441.499545 7715.530529 7391.754336 7413.931359 7127.903619 7113.687509 8217.993081 7939.941309 8094.763884 1.068463978 1.042834561 0.953150782 0.913152557 0.915892232 0.880557323 0.878801113 1.015223322 0.980873738 1 12.98277328 -6.623449538 3.495128943 1.034055364 0.916801403 0.560096246 0.04224205 0.114257854 2.745759702 0.006767086 0.009784682 2.38E-07 6.623449538 -0.117253961 SYESSEDCSEAAGS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 SYESSEDCSEAAGSPAR 17 0 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 SYESSEDCSEAAGS(1)PAR;SYESSEDCSEAAGS(1)PAR ; 252.37 2.73E-56 74085000 3257.9 2692.9 2325.21 2096.75 2745.9 2775.7 2441.8 1433.26 2483.1 2514.2 TRUE FALSE FALSE 2876.013901 2775.865057 2450.917886 2182.264528 2543.340428 2722.758147 2535.981044 1596.416525 2380.745567 2499.245427 1.150752891 1.110681259 0.980663147 0.873169359 1.017643326 1.089432081 1.014698683 0.638759406 0.952585745 1 11.28727687 -6.62311843 5.200070486 1.075869211 0.944051004 0.168980449 0.125576338 0.259508821 11.21121667 0.019686713 0.028004616 2.38E-07 6.62311843 -0.131818206 VQIPVSRPDPEPVSDNEEDS(ph)YDEEIHDPR ddPTM_HeLa_CUDC101_4h_R1 1 VQIPVSRPDPEPVSDNEEDSYDEEIHDPR 29 1 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2;H0YKB1 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 VQIPVSRPDPEPVS(0.005)DNEEDS(0.527)Y(0.468)DEEIHDPR 49.141 0.015415 12752000 658.67 587.95 499.65 405.44 501.12 516.02 607.36 526.46 544.26 559.69 TRUE FALSE FALSE 581.4617011 606.0640426 526.6625904 421.9755957 464.153376 506.1777782 630.7860787 586.3900784 521.8253724 556.360939 1.045115968 1.089336077 0.946620356 0.758456545 0.834266649 0.909801071 1.133771324 1.053974205 0.937925968 1 9.119877324 -6.62279279 8.371343625 1.026879187 0.932830566 0.117348054 0.104204024 0.383664951 28.8812471 0.017347755 0.024545516 2.38E-07 6.62279279 -0.09404862 S(ph)AASPVVSSMPER ddPTM_HeLa_CUDC101_4h_R1 1 SAASPVVSSMPER 13 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 S(0.49)AAS(0.49)PVVS(0.021)SMPER 162.67 4.18E-05 161140000 2457.8 2028.2 1768.9 1656.5 1848 1718.2 2027.9 1365.5 1736.2 1981.4 TRUE FALSE FALSE 2169.70041 2090.686438 1864.532085 1724.05923 1711.676722 1685.428198 2106.116782 1520.943 1664.633101 1969.614545 1.101586306 1.061469841 0.946648211 0.875328239 0.869041471 0.85571474 1.069304036 0.772203376 0.845156787 1 10.94369761 -6.621769232 3.672972552 1.050304216 0.896339699 0.165107992 0.09785813 0.148520952 3.891492378 0.011819602 0.017049635 2.39E-07 6.621769232 -0.153964518 VS(ph)LDVNHFAPDELTVK ddPTM_HeLa_CUDC101_4h_R1 1 VSLDVNHFAPDELTVK 16 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 VS(1)LDVNHFAPDELTVK 102.67 0.0022003 2273600 1833.3 1706.2 1436.2 1355.6 1501 1580.4 1354.8 1460 1690.2 1711.8 TRUE FALSE FALSE 1618.403353 1758.766 1513.845316 1410.887227 1390.27422 1550.256503 1407.05509 1626.200498 1620.529241 1701.618137 0.951096675 1.033584422 0.889650435 0.829144446 0.817030678 0.911048413 0.826892391 0.95567887 0.952346008 1 10.7326916 -6.62086434 6.20589211 0.980323129 0.864722211 0.601758258 0.045068275 0.102542279 5.533613077 0.006778714 0.009612785 2.39E-07 6.62086434 -0.115600917 SEANDAVNSS(ph)TK ddPTM_HeLa_CUDC101_4h_R1 1 SEANDAVNSSTK 12 0 O15234;J3KSY7;K7EQ38 O15234 CASC3 Protein CASC3 1 0 SEANDAVNS(0.037)S(0.482)T(0.482)K 250.05 1.68E-55 24318000 5062.1 3844.5 3815.8 3592.1 3269.4 3698.7 3531 3355.1 3986.5 4313 TRUE FALSE FALSE 4468.728312 3962.944488 4022.09369 3738.601364 3028.222876 3628.15346 3667.191853 3737.031022 3822.174783 4287.346084 1.042306411 0.924335104 0.938131331 0.872008299 0.706316406 0.84624693 0.855352421 0.871642025 0.891501341 1 12.06586916 -6.619464806 1.412503602 1.018718774 0.824559051 0.465399513 0.063775473 0.146293756 0.588175418 0.008937092 0.014150386 2.40E-07 6.619464806 -0.194159723 LPTEEEWEFAAR ddPTM_HeLa_CUDC101_4h_R1 1 LPTEEEWEFAAR 12 0 C9JL30;A8MXB9;H7C3B2;A0A494C1B1;J3KQJ1;C9J660;F8WA42;Q8NBJ7-2;Q8NBJ7;Q8NBJ7-3 C9JL30 SUMF2 Sulfatase-modifying factor 2 0 0 113.44 0.0013515 0 200.54 217.39 258.28 224.87 299.68 422.41 507.2 189.97 390.48 323.88 FALSE FALSE TRUE 177.0330052 224.0875282 272.2433981 234.0411706 277.5732034 414.353233 526.7628739 211.5954169 374.3842491 321.9535474 0.549871268 0.696024411 0.84559838 0.726940804 0.862152959 1.286996949 1.636145581 0.657223437 1.16285176 1 8.330708736 -5.342581029 4.520421518 0.777056853 1.237273719 0.243703333 0.27641909 0.17432648 6.471650536 0.037512856 0.087379948 4.54E-06 5.342581029 0.460216865 LPTEMEGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 3 LPTEMEGKK 9 1 Q9NWX6 Q9NWX6 THG1L Probable tRNA(His) guanylyltransferase 0 1 ;; LPTEMEGK(1)K;LPTEMEGK(1)K;LPTEMEGK(1)K 85.862 0.018398 10355600 4400.49 3921.96 3565.46 3802.22 3848.63 3723.52 4122.2 4719.54 2962.65 3147.73 FALSE TRUE FALSE 3884.671233 4042.790939 3758.219553 3957.290966 3564.724232 3652.50006 4281.194635 5256.793357 2840.528313 3129.007162 1.241502826 1.292036333 1.201090109 1.26471138 1.139250902 1.167303196 1.368227816 1.680019599 0.907804989 1 11.61148925 -1.000000069 0.736230222 1.140739975 89.55207827 0.679497093 0.112712037 148.6277641 0.637130426 0.019002822 21776.84271 0.099999984 1.000000069 88.41133829 LPTPTSSVPAQK(ac)TER ddPTM_HeLa_CUDC101_4h_R1 1 LPTPTSSVPAQKTER 15 1 Q9BTA9-2;Q9BTA9;Q9BTA9-3 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 0 1 LPTPTSSVPAQK(1)TER 105.66 0.031175 0 0 0 0 143.85 0 152.14 0 0 0 0 FALSE TRUE FALSE 0 0 0 149.7168248 0 149.238183 0 0 0 0 0 LPVDLAEELGHR ddPTM_HeLa_CUDC101_4h_R1 4 LPVDLAEELGHR 12 0 P42771-2;P42771;K7ES20;K7ENC6;J3QRG6;P42771-4 P42771-2 CDKN2A Cyclin-dependent kinase inhibitor 2A 0 0 ;;; ;;; 216.91 3.13E-24 34259600 28989.3 25084.6 24334.9 23707.2 26097.8 23664.3 24332.7 25779.8 26292.5 25520.8 FALSE FALSE TRUE 25591.2182 25857.42679 25650.5183 24674.08209 24172.61729 23212.9429 25271.22039 28714.46823 25208.71202 25369.00115 1.008759393 1.019252853 1.011096896 0.972607551 0.952840719 0.915012096 0.99614566 1.131872243 0.993681693 1 14.6307791 -6.282365796 23.17133558 1.006090255 0.987190735 0.007122507 0.052926163 1133.020531 1254564.336 0.008090143 0.012369406 5.22E-07 6.282365796 -0.01889952 GYDS(ph)EDDTWEPEQHLVNCEEYIHDFNR ddPTM_HeLa_CUDC101_4h_R1 4 GYDSEDDTWEPEQHLVNCEEYIHDFNR 27 0 Q9Y232-2;Q9Y232 Q9Y232-2 CDYL Chromodomain Y-like protein 1 0 GY(0.001)DS(0.999)EDDT(0.001)WEPEQHLVNCEEYIHDFNR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR;GY(0.004)DS(0.994)EDDT(0.002)WEPEQHLVNCEEYIHDFNR;GYDS(1)EDDTWEPEQHLVNCEEYIHDFNR ;;; 179.89 8.80E-15 54953400 4959.01 3751.86 3803.66 3269.72 3122.34 3664.11 3091.12 2981.72 3979.26 4442.37 TRUE FALSE FALSE 4377.722365 3867.45036 4009.297365 3403.073315 2892.011199 3594.223207 3210.345534 3321.146952 3815.233219 4415.946586 0.991344048 0.875791925 0.907913465 0.770632807 0.654901762 0.813919085 0.726989213 0.752080418 0.863967248 1 12.10850701 -6.619320864 1.153675515 0.99709762 0.736728864 0.661848692 0.062372541 0.108560722 0.289470623 0.008016521 0.013159352 2.40E-07 6.619320864 -0.260368756 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR ddPTM_HeLa_CUDC101_4h_R1 2 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR 32 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1X7SBS1 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 122.67 1.37E-14 53748000 1414.75 1249.62 1241.41 1082.68 1598.99 1442.15 1389.27 1550.55 1731.41 1243.94 FALSE FALSE TRUE 1248.91515 1288.119311 1308.52438 1126.83637 1481.035693 1414.643392 1442.854609 1727.058344 1660.040547 1236.54099 1.010007076 1.041711777 1.058213509 0.911281049 1.197724706 1.144032752 1.166847376 1.396685075 1.342487278 1 10.27209435 -1 0.452804229 1.002405517 9.875766875 0.28547759 0.123771776 23.43862183 0.251448794 0.012159963 194.2456716 0.1 1 8.873361358 QLSPEDSSS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 QLSPEDSSSPVK 12 0 Q96AY2;Q96AY2-2 Q96AY2 EME1 Crossover junction endonuclease EME1 1 0 QLSPEDSS(0.024)S(0.976)PVK;QLSPEDSS(0.014)S(0.986)PVK ; 197.06 3.49E-16 74128000 7986 6666.9 5534.9 5892.1 5260.3 5039.6 5165.2 4717.1 7782.3 7606.1 TRUE FALSE FALSE 7049.893186 6872.299287 5834.133436 6132.405306 4872.258149 4943.478027 5364.423494 5254.075597 7461.5103 7560.858579 0.93241966 0.908931071 0.77162314 0.811072611 0.644405407 0.653824956 0.70949925 0.694904625 0.986860186 1 12.88433435 -6.61821114 0.81698733 0.978894631 0.671924939 0.91844692 0.037099326 0.107857593 0.144293099 0.00789074 0.014159201 2.41E-07 6.61821114 -0.306969691 LTPVSLS(ph)NSPIK ddPTM_HeLa_CUDC101_4h_R1 1 LTPVSLSNSPIK 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LTPVS(0.003)LS(0.881)NS(0.116)PIK 115.37 0.0044037 121880000 5066.7 3173.5 3061.9 2883.8 2994.1 3002.8 2732.6 2204.2 3364 3128 TRUE FALSE FALSE 4472.789107 3271.271773 3227.435576 3001.413829 2773.231208 2945.526593 2837.997297 2455.117218 3225.334496 3109.394517 1.43847591 1.0520607 1.037962715 0.965272761 0.891887856 0.947299089 0.91271702 0.789580481 1.037286995 1 11.60241796 -6.618173773 1.785862296 1.204884511 0.901951126 0.414759006 0.124497776 0.265952151 1.719558284 0.028641238 0.043945444 2.41E-07 6.618173773 -0.302933385 LQALK(ac)DTANR ddPTM_HeLa_CUDC101_4h_R1 2 LQALKDTANR 10 1 P29401;P29401-2;E9PFF2;F8WAX4;F8W888 P29401 TKT Transketolase 0 1 ; LQALK(1)DTANR;LQALK(1)DTANR 134.84 0.0014568 2646500 809.75 473.95 402.3 432.63 1067.44 767.92 796.96 743.7 825.68 158.339 FALSE TRUE FALSE 714.8323325 488.5518377 424.0495549 450.2745214 988.6970778 753.2732054 827.6990142 828.3598019 791.6451209 157.3971926 4.541582482 3.103942515 2.694136712 2.860753194 6.281542012 4.785810935 5.258664405 5.262862623 5.029601278 1 7.298265998 -8.927634794 0.258222681 4.17E-31 5.267230445 0.033114388 1.494310756 2.43425156 0.276620013 4.246875917 1.08221345 1.18E-09 8.927634794 5.267230445 LQANGPVAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LQANGPVAKK 10 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2;S4R3C2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ; LQANGPVAK(1)K;LQANGPVAK(1)K 155.07 0.00038923 13543300 5404.1 4207 4954.8 4414.9 4787.6 4531.5 4787.7 5033.7 3087.5 2707 FALSE TRUE FALSE 4770.63959 4336.612683 5222.671475 4594.958705 4434.428286 4445.069187 4972.363193 5606.716061 2960.231943 2690.898644 1.772879704 1.611585295 1.940865178 1.707592635 1.647935829 1.651890233 1.847844847 2.083585004 1.100090466 1 11.39387234 -9.428506864 0.47900052 0.763257568 1.80847841 0.818981442 0.138173847 0.592561944 0.16575499 0.303365129 0.03756442 3.73E-10 9.428506864 1.045220842 ELEEVS(ph)PETPVVPATTQR ddPTM_HeLa_CUDC101_4h_R1 4 ELEEVSPETPVVPATTQR 18 0 Q15149 Q15149 PLEC Plectin 1 0 ELEEVS(0.963)PET(0.037)PVVPATTQR;ELEEVS(0.981)PET(0.019)PVVPATTQR;ELEEVS(1)PETPVVPATTQR;ELEEVS(1)PETPVVPATTQR ;;; 213.02 3.20E-24 133704000 13724.6 10471.2 10878.1 10406.7 10978.3 10677.8 9677.7 9093.7 11551.1 12349.3 TRUE FALSE FALSE 12115.82319 10793.80526 11466.20299 10831.13021 10168.45268 10474.13876 10050.97213 10128.89005 11074.95877 12275.84581 0.986964432 0.879271818 0.934045862 0.882312337 0.828330107 0.853231534 0.81876005 0.825107304 0.902174802 1 13.58353481 -6.618131902 0.636608465 1.00096163 0.820289851 0.601409989 0.039018359 0.147537894 0.121814415 0.005644725 0.01097741 2.41E-07 6.618131902 -0.180671779 LQDAEIAR ddPTM_HeLa_CUDC101_4h_R1 1 LQDAEIAR 8 0 R4GN98;P06703 R4GN98 S100A6 Protein S100;Protein S100-A6 0 0 126.24 0.034791 19364000 5863 5889.1 5046 4833.7 5792.3 5476.9 5001.7 4293.8 5615.3 4144.5 FALSE FALSE TRUE 5175.748028 6070.536191 5318.802023 5030.839179 5365.013569 5372.437258 5194.617244 4782.588836 5383.834957 4119.84833 1.25629577 1.473485358 1.291018891 1.221122424 1.302235699 1.304037631 1.260875845 1.160865268 1.306804165 1 12.00837551 -8.835184906 0.841303849 1.00946399 1.286178109 0 0.119191974 0.275668732 0.377886262 0.043115135 0.016557857 1.46E-09 8.835184906 0.276714119 LQDEFENR ddPTM_HeLa_CUDC101_4h_R1 1 LQDEFENR 8 0 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5;H0YD77;H0YEC5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 0 146.23 0.020093 10920000 3005.5 2512.2 2338.3 2516.1 3077.1 2507.1 2225.9 2087.8 2405.4 2488.5 FALSE FALSE TRUE 2653.199846 2589.597904 2464.715571 2618.717434 2850.108463 2459.281245 2311.753709 2325.466713 2306.248394 2473.698291 1.072564045 1.046852768 0.996368708 1.058624426 1.152164948 0.994171865 0.934533414 0.940076937 0.932307874 1 11.27245384 -4.990277526 7.295693033 1.04287817 0.943185517 0.345337494 0.0542334 0.094943539 29.35163799 0.006519801 0.019007883 1.02E-05 4.990277526 -0.099692654 LQDEIQNMKEEMAR ddPTM_HeLa_CUDC101_4h_R1 2 LQDEIQNMKEEMAR 14 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ; ; 204.18 4.30E-17 118861000 3158.5 2904.6 2919.9 2809.6 3663 3124.3 3436.4 3408.6 3760.7 3410.5 FALSE FALSE TRUE 2788.265418 2994.087283 3077.758626 2924.187632 3392.787788 3064.709183 3568.943099 3796.621246 3605.682354 3390.214194 0.822445208 0.883155787 0.907836039 0.862537723 1.000759124 0.903986889 1.05271906 1.119876512 1.063555913 1 11.72716071 -4.480385172 1.352924285 0.910391571 1.172630809 0.41241961 0.072029194 0.584891382 1.237642528 0.010660329 0.186800259 3.31E-05 4.480385172 0.262239238 GPPASSPAPAPKFS(ph)PVTPK ddPTM_HeLa_CUDC101_4h_R1 2 GPPASSPAPAPKFSPVTPK 19 1 Q15942-2;Q15942;H0Y2Y8;H7C3D3 Q15942-2 ZYX Zyxin 1 0 GPPASSPAPAPKFS(0.988)PVT(0.012)PK;GPPASS(0.001)PAPAPKFS(0.932)PVT(0.066)PK ; 105.46 0.00028589 398820000 6340 7655.6 7193.2 7469.4 9831.4 7654.9 8082.5 9689.2 8354.3 5935.1 TRUE FALSE FALSE 5596.834811 7891.459962 7582.08615 7774.034418 9106.157209 7508.895536 8394.244732 10792.17936 8009.932218 5899.797761 0.948648587 1.337581436 1.285143399 1.317678119 1.543469383 1.272737785 1.422802115 1.829245645 1.357662168 1 12.52644979 -6.617184728 0.694718103 0.962443732 1.532960671 0.353347567 0.190974285 0.266112041 0.259658025 0.033440677 0.063257695 2.41E-07 6.617184728 0.57051694 SPTTVLFTS(ph)SPIK ddPTM_HeLa_CUDC101_4h_R1 1 SPTTVLFTSSPIK 13 0 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 0 SPTTVLFT(0.072)S(0.856)S(0.072)PIK 195.72 2.07E-16 18630000 3568.2 3054.2 2242.4 2190.6 2322.5 3005.1 2072.1 1293.4 2444.7 2511.6 TRUE FALSE FALSE 3149.941005 3148.296282 2363.630927 2279.942137 2151.173802 2947.782724 2152.021591 1440.635428 2343.928431 2496.660891 1.261661532 1.261002763 0.946716847 0.91319656 0.861620338 1.180690071 0.861959908 0.577024871 0.938825308 1 11.28578417 -6.615951237 6.359349565 1.137015113 0.89724278 0.306997348 0.165778922 0.198437087 11.36272477 0.027108812 0.038437588 2.42E-07 6.615951237 -0.239772333 VDLEPVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 VDLEPVSPR 9 0 H7C1V4;Q9HCH0-2;Q9HCH0 H7C1V4 NCKAP5L Nck-associated protein 5-like 1 0 VDLEPVS(1)PR;VDLEPVS(1)PR ; 110.54 0.0099558 9608400 4867.9 4303.8 3864.7 3837.2 4241.2 4503 3688.2 3567.1 4579.4 4256.4 TRUE FALSE FALSE 4297.292141 4436.394977 4073.637372 3993.697602 3928.335126 4417.112778 3830.455109 3973.164245 4390.635194 4231.082744 1.015648334 1.04852475 0.962788397 0.943894942 0.928446774 1.043967477 0.905313212 0.939041963 1.037709603 1 12.04681118 -6.614631774 7.841386621 1.010628531 0.953329578 0.455378781 0.037074247 0.189097251 14.16900901 0.005480583 0.007757206 2.43E-07 6.614631774 -0.057298952 LT(ph)LSEGHPETPVDGDLGK ddPTM_HeLa_CUDC101_4h_R1 1 LTLSEGHPETPVDGDLGK 18 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 LT(0.544)LS(0.456)EGHPETPVDGDLGK 83.395 0.0014033 0 2713 2043.5 1744.5 1870.8 1839 1676.5 1627.5 1295.6 2098.8 2473.4 TRUE FALSE FALSE 2394.986253 2106.457813 1838.812947 1947.09931 1703.340634 1644.523556 1690.27322 1443.085867 2012.286576 2458.688107 0.97409112 0.856740555 0.747883777 0.791926111 0.692784347 0.668862208 0.687469556 0.586933277 0.818439138 1 11.26367302 -6.613579412 0.690289002 1.00110814 0.6411939 0.711547507 0.06800842 0.105535688 0.101688206 0.008327224 0.015829533 2.43E-07 6.613579412 -0.35991424 LQEDKEQMAQQLAEETQGFQR ddPTM_HeLa_CUDC101_4h_R1 1 LQEDKEQMAQQLAEETQGFQR 21 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 63.302 0.01621 2718800 787.68 860.27 639.55 830.81 1025.1 955.16 696.18 612.87 903.99 822.61 FALSE FALSE TRUE 695.3493444 886.773899 674.1260075 864.6940229 949.4804153 936.9419144 723.0318958 682.6366435 866.7271496 817.7170791 0.850354435 1.084450749 0.824400058 1.057448896 1.161135605 1.145802061 0.884207893 0.834807858 1.059935241 1 9.675457963 -6.216814064 24.94660184 0.934485902 1.024519592 0.015375951 0.123228136 792.2496182 442886.2043 0.018847237 0.031254509 6.07E-07 6.216814064 0.09003369 (ac)MDRNPS(ph)PPPPGR ddPTM_HeLa_CUDC101_4h_R1 6 MDRNPSPPPPGR 12 1 E9PL53;E9PMD2;J3KND1;E9PRZ1;Q96ER3 E9PL53 SAAL1 Protein SAAL1 1 0 MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR ;;;;; 78.098 0.0013629 324894000 2717.83 2734.05 3027.7 3586.04 3882.06 3391.97 3208.1 2615.17 3684.76 3308.06 TRUE FALSE FALSE 2399.250087 2818.28284 3191.38662 3732.294211 3595.688168 3327.273824 3331.837492 2912.870382 3532.872633 3288.383512 0.72961383 0.857042018 0.970503169 1.134993591 1.093451586 1.011826574 1.013214389 0.885806163 1.074349333 1 11.68316285 -6.613328888 4.343178587 0.867922326 1.031750446 0.139482957 0.107782697 0.20622714 7.160793769 0.018733381 0.026845447 2.44E-07 6.613328888 0.163828119 GAEAFGDS(ph)EEDGEDVFEVEK ddPTM_HeLa_CUDC101_4h_R1 4 GAEAFGDSEEDGEDVFEVEK 20 0 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 GAEAFGDS(1)EEDGEDVFEVEK;GAEAFGDS(1)EEDGEDVFEVEK;GAEAFGDS(1)EEDGEDVFEVEK;GAEAFGDS(1)EEDGEDVFEVEK ;;; 206.43 1.26E-24 32241200 23004.3 21166.2 17617.2 16098.6 16263.2 18529.1 17678 15081.4 18011.7 22646 TRUE FALSE FALSE 20307.77083 21818.30553 18569.63912 16755.17049 15063.49614 18175.68829 18359.84638 16798.20561 17269.2501 22511.30058 0.902114507 0.969215681 0.824902988 0.744300421 0.669152636 0.807402852 0.815583547 0.746212133 0.767136934 1 14.45836179 -6.612624246 3.26906939 0.953876683 0.758795718 0.445990904 0.073729955 0.089804117 1.923991947 0.008558929 0.012464515 2.44E-07 6.612624246 -0.195080965 LQEELSENDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 LQEELSENDKK 11 1 O95347-2;O95347;Q5T821 O95347-2 SMC2 Structural maintenance of chromosomes protein 2 0 1 LQEELSENDK(1)K 146.16 0.00014118 560710 338.91 134.06 96.951 64.351 412.27 300.34 194.22 267.32 210.57 258.06 FALSE TRUE FALSE 299.1834836 138.1902297 102.1924643 66.97551193 381.8576635 294.6115149 201.7111305 297.7506283 201.8902155 256.5250476 1.166293453 0.538700727 0.398372265 0.261087611 1.488578472 1.148470754 0.786321384 1.160707818 0.787019503 1 8.00295589 -7.297723208 24.87560763 1.078527472 0.824213235 0.019112973 0.366060561 1032.210041 707663.9592 0.064045197 0.073239725 5.04E-08 7.297723208 -0.254314237 LQEEMLQR ddPTM_HeLa_CUDC101_4h_R1 1 LQEEMLQR 8 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 129.42 0.031465 27361000 3678.8 2877.3 2858.4 2900.5 2976.4 2829.4 2482.1 2554.1 2865.3 3412.9 FALSE FALSE TRUE 3247.576641 2965.946203 3012.93375 3018.794927 2756.836902 2775.433909 2577.835428 2844.84842 2747.191121 3392.599919 0.957253056 0.874239897 0.888089908 0.889817544 0.812603009 0.818084648 0.75984068 0.838545212 0.809759826 1 11.72817559 -6.641375718 0.480104992 0.997654089 0.783449442 0.132497454 0.064344754 0.207884335 0.102468352 0.008643686 0.017712372 2.28E-07 6.641375718 -0.214204648 LQEEMLQREEAENTLQSFR ddPTM_HeLa_CUDC101_4h_R1 2 LQEEMLQREEAENTLQSFR 19 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ; ; 94.61 0.0030449 29745400 1701.93 1367.47 1108.933 1665.84 1769.39 1609.12 1633.5 1909.09 1976.59 1707.3 FALSE FALSE TRUE 1502.432345 1409.60013 1168.885272 1733.780156 1638.865625 1578.428717 1696.504642 2126.413089 1895.114124 1697.144904 0.885270516 0.830571466 0.688736283 1.021586402 0.965660399 0.930049469 0.999622742 1.252935494 1.11664839 1 10.72889403 -3.947478577 1.44454099 0.922452913 1.65308571 0.437758415 0.109519135 1.700570549 1.759199282 0.014543197 2.222971465 0.000112855 3.947478577 0.730632797 LGS(ph)ALLIR ddPTM_HeLa_CUDC101_4h_R1 2 LGSALLIR 8 0 Q14993 Q14993 COL19A1 Collagen alpha-1(XIX) chain 1 0 LGS(1)ALLIR;LGS(1)ALLIR ; 112.11 0.010631 38822000 6951.5 5640.2 5690 5277.8 6148.7 5397.1 5524.6 5242.2 6711.8 6091 TRUE FALSE FALSE 6136.655708 5813.967877 5997.618611 5493.051497 5695.122651 5294.15931 5737.685673 5838.950858 6435.136763 6054.770461 1.013524088 0.960229279 0.990560856 0.907227042 0.940600917 0.874378202 0.947630585 0.964355444 1.062820928 1 12.56385655 -6.612242361 1.428809074 1.005636569 0.92588323 0.590767007 0.032781329 0.181701603 0.747403754 0.004578679 0.007261627 2.44E-07 6.612242361 -0.079753339 LQEK(ac)EDLQELNDR ddPTM_HeLa_CUDC101_4h_R1 1 LQEKEDLQELNDR 13 1 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 LQEK(1)EDLQELNDR 137.81 0.0010879 1848200 755.41 303.67 292.21 337.79 955.77 662.38 708.69 740.38 689.15 482.89 FALSE TRUE FALSE 666.8619849 313.0257128 308.0077565 351.5665363 885.2647513 649.7462051 736.0244107 824.6618665 660.7429453 480.0177488 1.389244432 0.652112789 0.6416591 0.732403202 1.844233372 1.353587876 1.533327492 1.71798203 1.376496904 1 8.906943941 -5.755896034 24.99986968 1.070389518 1.588164822 0.534918781 0.285268746 112.7561703 508512.0003 0.047068248 0.092046546 1.75E-06 5.755896034 0.517775303 LQEKEDLQELNDR ddPTM_HeLa_CUDC101_4h_R1 3 LQEKEDLQELNDR 13 1 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;; ;; 135.81 0.0011188 380097900 9396.4 9007.2 9072.8 8690.1 9917.5 8931.4 8275.9 9480.4 9142.6 9210 FALSE FALSE TRUE 8294.968236 9284.701156 9563.303012 9044.51984 9185.905783 8761.048426 8595.104235 10559.61041 8765.738158 9155.21851 0.906037166 1.014143043 1.044573977 0.987908681 1.003351889 0.956945857 0.938820218 1.153397967 0.957458104 1 13.1603786 -7.218628868 24.2486747 0.955628645 1.008808689 0.173243294 0.058906603 499.1863042 282748.4906 0.010254726 0.012559363 6.04E-08 7.218628868 0.053180044 SS(ph)PVLQHK ddPTM_HeLa_CUDC101_4h_R1 1 SSPVLQHK 8 0 Q3V6T2;H0Y470;A0A2U3TZV9;A0A2R8Y7B1;H7C2C6;A0A2R8Y820;A0A2R8YCU9;A0A2R8Y885;A0A2R8YDS8;A0A2R8Y7D4;H0Y7U8;A0A2R8Y5D7;Q3V6T2-5;Q3V6T2-4;Q3V6T2-2;Q3V6T2-3;H0Y7K3;A0A2R8Y4Z5;A0A2R8Y4C6 Q3V6T2 CCDC88A Girdin 1 0 S(0.164)S(0.836)PVLQHK 108.47 0.0078921 7082800 4295.7 1066.3 3674.4 3769.8 1735.4 1747.7 2449.2 876.69 4175.6 4925.8 TRUE FALSE FALSE 3792.164558 1099.151439 3873.049178 3923.548738 1607.382999 1714.365534 2543.666464 976.4888459 4003.480001 4896.501123 0.774464146 0.224476909 0.790983006 0.801296403 0.328271751 0.350120523 0.519486548 0.199425839 0.817620562 1 12.2575355 -6.609229404 0.171107541 1.218679277 6.17E-12 0.475352395 0.199060298 2.82895323 0.289959229 0.689676935 1.16780293 2.46E-07 6.609229404 -1.218679277 PGNKPT(ph)S(ph)LDET(ph)S(ph)S(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 PGNKPTSLDETSSK 14 1 A0A0A0MQZ3;A0A5F9ZH43;A4UGR9-2;A4UGR9-3;A4UGR9;A4UGR9-8 A0A0A0MQZ3 XIRP2 Xin actin-binding repeat-containing protein 2 5 0 PGNKPT(1)S(1)LDET(1)S(1)S(1)K 62.69 0.023298 35049000 2016.7 1595 1410.8 1479.8 1161.8 1548.6 1339.4 1247.2 1586.6 1696.9 TRUE FALSE FALSE 1780.305483 1644.140059 1487.072115 1540.15264 1076.096329 1519.063035 1391.061107 1389.176207 1521.199676 1686.806763 1.05542942 0.974705636 0.881590084 0.913058137 0.637948787 0.900555457 0.824671288 0.823553851 0.901822135 1 10.720079 -6.608509677 1.587329478 1.026215933 0.81151675 0.463794427 0.080111613 0.160403899 0.816364455 0.011483521 0.017963901 2.46E-07 6.608509677 -0.214699182 FELLPTPPLS(ph)PSRR ddPTM_HeLa_CUDC101_4h_R1 2 FELLPTPPLSPSRR 14 1 H0YBG3;A0A0B4J1R1;H0YBT0;A0A087WUS5;P01106;P01106-2 H0YBG3 MYC Myc proto-oncogene protein 1 0 FELLPTPPLS(0.578)PS(0.422)RR;FELLPTPPLS(0.823)PS(0.177)RR ; 93.768 0.0059053 15462500 8926.1 7253.5 5587.6 5191.7 4987.1 4945.6 4788.6 3266.8 8587.9 8618 TRUE FALSE FALSE 7879.796089 7476.971737 5889.682558 5403.439966 4619.211569 4851.27092 4973.297906 3638.679307 8233.903127 8566.739753 0.919812708 0.872790811 0.687505717 0.630746366 0.539202976 0.566291385 0.580535659 0.424744934 0.961147807 1 13.06453055 -6.607833617 0.840413484 0.976842484 0.514010796 0.951613495 0.042412151 0.077563449 0.109686859 0.008642992 0.015486183 2.47E-07 6.607833617 -0.462831689 DSRHLGSY(ph)TISVFMGAR ddPTM_HeLa_CUDC101_4h_R1 1 DSRHLGSYTISVFMGAR 17 1 P42681 P42681 TXK Tyrosine-protein kinase TXK 1 0 DSRHLGS(0.185)Y(0.788)T(0.02)IS(0.007)VFMGAR 99.238 0.0025655 11178000 1638.9 2644.1 2091.5 2534.5 4484.2 4413.3 3622.7 2212.2 3428.8 1313 TRUE FALSE FALSE 1446.790626 2725.561587 2204.572816 2637.867865 4153.4095 4329.123656 3762.428753 2464.027906 3287.463413 1305.190218 1.108490247 2.088248556 1.689081627 2.021060095 3.182225429 3.316852668 2.882666987 1.887868812 2.518761916 1 10.35004436 -6.606773714 0.895537948 1.026912213 2.832144905 0.271140126 0.650455288 0.200826841 0.322076095 0.090085964 0.158517718 2.47E-07 6.606773714 1.805232692 LQEMEGTVK(ac)SK ddPTM_HeLa_CUDC101_4h_R1 2 LQEMEGTVKSK 11 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 1 ; LQEMEGTVK(1)SK;LQEMEGTVK(1)SK 162.68 1.49E-07 1085500 734.28 530.76 559.13 210.15 676.25 683.45 560.38 628.51 682.85 713.8 FALSE TRUE FALSE 648.2088115 547.1120865 589.3582591 218.7208253 626.3643848 670.41433 581.9940443 700.0570379 654.702634 709.5542859 0.913543649 0.771064452 0.83060348 0.30825101 0.882757524 0.944838673 0.820224831 0.986615192 0.922695623 1 9.470769255 -7.493201334 1.858884947 0.96919645 0.784400392 0.134592446 0.176534657 0.42557201 2.906626327 0.034718478 0.037720784 3.21E-08 7.493201334 -0.184796059 LQEQLEATVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 LQEQLEATVKK 11 1 Q6UVJ0 Q6UVJ0 SASS6 Spindle assembly abnormal protein 6 homolog 0 1 LQEQLEATVK(1)K 73.841 0.032422 0 0 196.92 0 0 75.163 0 93.942 0 0 0 FALSE TRUE FALSE 0 202.9868718 0 0 69.61837524 0 97.56537441 0 0 0 0 LQEVPHEGPMCDLLWSDPDDR ddPTM_HeLa_CUDC101_4h_R1 5 LQEVPHEGPMCDLLWSDPDDR 21 0 H0YC23;P67775;P62714;E5RHC1 H0YC23 PPP2CB;PPP2CA Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform;Serine/threonine-protein phosphatase 0 0 ;;;; ;;;; 143.23 2.41E-05 116668000 13817.53 13375.62 11477.96 11404.86 13508.43 12276.43 11685.64 10764.47 13541.04 8001.97 FALSE FALSE TRUE 12197.86008 13787.707 12098.49324 11869.99949 12511.94003 12042.27755 12136.35905 11989.85375 12982.8726 7954.373927 1.533478334 1.733349114 1.520986233 1.492260685 1.572963523 1.513918966 1.52574661 1.507328404 1.632167751 1 12.95753267 -9.025135251 0.753340978 0.98665432 1.552681228 0 0.203981235 0.169025244 0.170423472 0.055816322 0.015787673 9.44E-10 9.025135251 0.566026909 LQFHDVAGDIFHQQCK ddPTM_HeLa_CUDC101_4h_R1 2 LQFHDVAGDIFHQQCK 16 0 P11413-3;P11413;P11413-2 P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 153 0.00010417 48744000 11211.4 8966.2 7856.4 8150.2 9271.8 9212.3 8289.2 7606.6 8579.1 7624.6 FALSE FALSE TRUE 9897.216687 9242.437994 8281.140748 8482.600384 8587.837786 9036.590726 8608.917221 8472.504597 8225.465867 7579.24854 1.305830866 1.219439888 1.092607097 1.119187521 1.13307246 1.192280564 1.135853663 1.117855491 1.085261398 1 12.8878391 -9.634213844 1.478304815 1.000633164 1.182894385 0.301094888 0.066025782 0.305615528 1.206846222 0.053996024 0.012475556 2.32E-10 9.634213844 0.182261221 TPPRDLPT(ph)IPGVT(ph)SPSSDEPPMEASQSHLR ddPTM_HeLa_CUDC101_4h_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 T(0.382)PPRDLPT(0.606)IPGVT(0.291)S(0.291)PS(0.29)S(0.14)DEPPMEASQSHLR 65.223 0.00035249 5876200 924.61 749.87 685.39 499.34 843.32 811.96 726.03 551.4 815.77 717.12 TRUE FALSE FALSE 816.2286174 772.9726059 722.4442566 519.7052435 781.1099637 796.4732158 754.0332203 614.1691472 782.1436153 712.8545383 1.145014268 1.084334271 1.01345256 0.729048095 1.095749444 1.117301179 1.057765897 0.861563074 1.097199461 1 9.477463907 -6.606537684 6.07753957 1.0711061 0.98064196 0.16833498 0.112639359 0.36227948 20.98218327 0.019012547 0.026988932 2.47E-07 6.606537684 -0.09046414 LQGQLEQGDDTAAER ddPTM_HeLa_CUDC101_4h_R1 2 LQGQLEQGDDTAAER 15 0 Q8NE71;Q8NE71-2;H0YGW7 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 0 0 ; ; 242.4 1.81E-43 14056300 1192.65 1185.46 852.9 1092.89 1308.19 1010.21 1007.54 1344.79 1104.29 1119.69 FALSE FALSE TRUE 1052.849375 1221.982617 899.0103539 1137.462778 1211.68743 990.9419274 1046.401155 1497.875458 1058.770699 1113.030034 0.945930786 1.097888269 0.807714371 1.021951559 1.088638575 0.890310142 0.940137394 1.345763737 0.95125079 1 10.12027681 -4.258201898 24.94536217 0.974552964 1.345763879 0.647409735 0.082825075 132.3801091 1019961.259 0.010438891 0.099465358 5.52E-05 4.258201898 0.371210914 SDSPES(ph)DAER ddPTM_HeLa_CUDC101_4h_R1 2 SDSPESDAER 10 0 O75400-2;O75400-3;O75400 O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 SDSPES(1)DAER;SDS(0.001)PES(0.999)DAER ; 137.01 0.0015677 11497400 4920.4 3359.9 3513.8 3464.6 2862.3 3153.1 2910 2700.9 3408.3 4274.8 TRUE FALSE FALSE 4343.638171 3463.414537 3703.766657 3605.901363 2651.153832 3092.959871 3022.239675 3008.359539 3267.808431 4249.373299 1.022183241 0.815041253 0.871603033 0.848572509 0.6238929 0.727862594 0.711220093 0.707953697 0.769009499 1 12.05303437 -6.603874997 0.871300901 1.013667276 0.696442029 0.389131877 0.095616005 0.145639087 0.221185858 0.011310697 0.020101165 2.49E-07 6.603874997 -0.317225247 LQIEESSK(ac)PVR ddPTM_HeLa_CUDC101_4h_R1 2 LQIEESSKPVR 11 1 P13984 P13984 GTF2F2 General transcription factor IIF subunit 2 0 1 ; LQIEESSK(1)PVR;LQIEESSK(1)PVR 150.09 0.00013265 2074410 755.45 576.45 562.75 601.05 851.45 462.99 629.85 558.02 590.22 570.44 FALSE TRUE FALSE 666.8972962 594.2097412 593.1739672 625.563417 788.6402298 454.1592371 654.1435255 621.5427412 565.8908818 567.0469975 1.176088224 1.047902103 1.046075493 1.103195008 1.390784597 0.800919922 1.153596665 1.096104457 0.997961164 1 9.147324502 -9.596173171 1.394317292 1.000070213 1.110132645 0.079318391 0.137454637 0.893613238 3.120064198 0.091440408 0.021237492 2.53E-10 9.596173171 0.110062432 EPES(ph)PPASAPIPLFGADTIGQR ddPTM_HeLa_CUDC101_4h_R1 2 EPESPPASAPIPLFGADTIGQR 22 0 Q96AY4 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 EPES(1)PPASAPIPLFGADTIGQR;EPES(1)PPASAPIPLFGADTIGQR ; 192.54 1.90E-14 50439000 5131.1 3821.7 3807.6 3683.1 4296.9 3842.8 3449.5 3734.1 3885.1 3779.5 TRUE FALSE FALSE 4529.640236 3939.442047 4013.450373 3833.312738 3979.926248 3769.504993 3582.548371 4159.17485 3724.954534 3757.019366 1.205647295 1.048555161 1.068253842 1.020306888 1.059330778 1.00332328 0.953561327 1.1070411 0.991465353 1 11.87537284 -6.600794317 2.061199643 1.096767817 1.025049381 0 0.069088339 0.506729368 4.364696949 0.01388309 0.02110462 2.51E-07 6.600794317 -0.071718436 S(ph)SPAFGDR ddPTM_HeLa_CUDC101_4h_R1 1 SSPAFGDR 8 0 P13716;P13716-2 P13716 ALAD Delta-aminolevulinic acid dehydratase 1 0 S(0.5)S(0.5)PAFGDR 89.886 0.029481 12213000 2551.6 2034.8 1882.1 1792.2 1946 1827.2 1883.6 1521 1716.8 2151.1 TRUE FALSE FALSE 2252.505316 2097.489776 1983.852019 1865.293663 1802.447457 1792.349204 1956.251083 1694.144492 1646.032777 2138.305162 1.053406855 0.980912273 0.927768428 0.872323416 0.842932753 0.838210203 0.914860572 0.792283778 0.769783849 1 11.06225204 -6.600560523 1.675460979 1.025088579 0.85203867 0.032219807 0.086585478 0.093927909 0.532793564 0.005565354 0.008672478 2.51E-07 6.600560523 -0.173049909 LVEPGS(ph)PAEK ddPTM_HeLa_CUDC101_4h_R1 1 LVEPGSPAEK 10 0 O14745;J3QRP6 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 0 LVEPGS(1)PAEK 88.596 0.030611 6950700 2104.3 1914.5 1916.5 2261.3 1856.3 1799.8 1377.1 890.94 2282.6 2277.2 TRUE FALSE FALSE 1857.637144 1973.483476 2020.111787 2353.525588 1719.364447 1765.471814 1430.215208 992.3610083 2188.510262 2263.655113 0.820636118 0.871812788 0.89241147 1.039701487 0.7595523 0.779920847 0.631816746 0.438388782 0.966803754 1 11.14443845 -4.255219244 0.809653225 0.915554761 0.147409633 0.824899853 0.072047352 0.864912273 0.403397563 0.013771676 0.597051899 5.56E-05 4.255219244 -0.768145128 down LQLEIDQK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 LQLEIDQKK 9 1 Q9Y266;A0A0A0MSU9;A0A0A0MSS4 Q9Y266 NUDC Nuclear migration protein nudC 0 1 LQLEIDQK(1)K 95.523 0.0067985 0 686.38 257.12 260.9 409.45 551.54 507.46 842.19 392.1 773.62 1138.7 FALSE TRUE FALSE 605.9235769 265.0415624 275.0050432 426.1491408 510.853993 497.781046 874.6735504 436.7350791 741.7310562 1131.926962 0.535302716 0.234150764 0.242952993 0.376481129 0.451313566 0.439764281 0.772729672 0.385833268 0.655281729 1 10.14456516 -8.650823885 0.814098918 0.972091014 0.428516102 0.414569301 0.174460514 0.268829299 0.358110976 0.076780323 0.034245692 2.23E-09 8.650823885 -0.543574912 MSSNIVSNGIS(ph)MTDILGST(ph)S(ph)QDVK ddPTM_HeLa_CUDC101_4h_R1 1 MSSNIVSNGISMTDILGSTSQDVK 24 0 G3V2N2;Q9UIU6 G3V2N2 SIX4 Homeobox protein SIX4 3 0 MS(0.026)S(0.027)NIVS(0.104)NGIS(0.829)MT(0.055)DILGS(0.21)T(0.875)S(0.875)QDVK 53.201 0.0020929 0 598.75 536.56 458.1 496.69 414.21 381.36 396 680.16 556.72 558.94 TRUE FALSE FALSE 528.5654326 553.0907776 482.8662717 516.9471651 383.6545535 374.0861934 411.2738527 757.5866651 533.771766 555.6154 0.951315303 0.995456169 0.869065673 0.930404674 0.690503815 0.673282622 0.740213199 1.36350912 0.960685694 1 9.117942777 -6.599712309 2.070249636 0.978270383 0.849274573 0.04999091 0.184914918 0.597011013 5.187112272 0.029480915 0.044813703 2.51E-07 6.599712309 -0.12899581 KASATCSSATAAASSGLEEWTSRS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 KASATCSSATAAASSGLEEWTSRSPR 26 2 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 KASATCSSATAAAS(0.11)S(0.11)GLEEWT(0.041)S(0.207)RS(0.531)PR 71.159 0.00029263 22611000 1286.1 1231.8 1407.2 1485 1935.4 1558 1729.5 1380.5 1662.6 1234.9 TRUE FALSE FALSE 1135.345308 1269.750298 1483.277489 1545.564719 1792.629398 1528.283746 1796.207394 1537.65054 1594.066924 1227.55476 0.924883634 1.03437365 1.208318795 1.259059693 1.460325402 1.244982135 1.463240136 1.252612584 1.298570928 1 10.26157167 -6.599281835 1.669205429 0.963747754 1.350907564 0.438321524 0.128964228 0.088141255 0.4961348 0.011657765 0.018185346 2.52E-07 6.599281835 0.38715981 ASVSGPNS(ph)PSETRR ddPTM_HeLa_CUDC101_4h_R1 2 ASVSGPNSPSETRR 14 1 A0A087X0X0;C9J453;A0A087X255;O15344-2;O15344 A0A087X0X0 MID1 E3 ubiquitin-protein ligase Midline-1 1 0 ASVSGPNS(0.991)PS(0.001)ET(0.009)RR;ASVSGPNS(0.992)PS(0.006)ET(0.002)RR ; 108.96 0.0020407 25072000 3054.6 2746.3 2603.1 2777.9 3718.5 2951.8 2784.6 3025.2 2951.6 2557.1 TRUE FALSE FALSE 2696.544418 2830.910248 2743.83146 2891.194769 3444.193663 2895.499333 2892.002955 3369.57654 2829.933799 2541.890255 1.060842187 1.113702782 1.079445288 1.137419195 1.354973393 1.139112645 1.137737142 1.325618418 1.113318639 1 11.31168603 -6.598761469 0.560814442 1.012636674 1.241172676 0.444927076 0.078575321 0.431099148 0.279462039 0.019561285 0.040194255 2.52E-07 6.598761469 0.228536002 LQLLEDDK(ac)ENR ddPTM_HeLa_CUDC101_4h_R1 2 LQLLEDDKENR 11 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 1 ; LQLLEDDK(1)ENR;LQLLEDDK(1)ENR 158.41 0.0001488 1038450 916.67 443.17 279.907 159.25 574.87 543.97 715.09 532.8 770.65 755.38 FALSE TRUE FALSE 809.2193322 456.8235424 295.0396191 165.7449033 532.4629854 533.5946786 742.6712608 593.4517983 738.8834808 750.8869662 1.077684617 0.608378575 0.392921481 0.220732162 0.709112036 0.710619178 0.989058666 0.790334398 0.984014258 1 9.55245194 -7.259467352 24.70711841 1.036684407 0.626381259 0.443457533 0.199382953 104.5787927 1310246.38 0.036965385 0.044067955 5.50E-08 7.259467352 -0.410303148 LQLLEDDKENR ddPTM_HeLa_CUDC101_4h_R1 1 LQLLEDDKENR 11 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 0 92.112 0.027322 17926000 1359.3 1135.8 1290.5 1066.9 1174.7 1172.9 1062.8 1064.8 1177.3 1439.9 FALSE FALSE TRUE 1199.964915 1170.792652 1360.268334 1110.412794 1088.044721 1150.528887 1103.792552 1186.012528 1128.771196 1431.335411 0.838353404 0.817972254 0.95034911 0.775787971 0.760160556 0.803815009 0.77116275 0.828605594 0.788614036 1 10.48314607 -11.67590349 0.185637032 1.388785671 0.765523931 0 0.082080346 11.06978841 0.239511992 1.718901373 0.068882138 2.11E-12 11.67590349 -0.62326174 EYIPGQPPLSQS(ph)S(ph)DSSPTR ddPTM_HeLa_CUDC101_4h_R1 1 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 0 EYIPGQPPLS(0.246)QS(0.751)S(0.856)DS(0.06)S(0.077)PT(0.01)R 101.54 0.011638 111780000 3966.6 3544 3152.8 2954.8 3183.7 3453.3 3282.9 2475.3 3682 3755.2 TRUE FALSE FALSE 3501.641161 3653.186439 3323.249905 3075.309516 2948.844794 3387.434056 3409.522553 2757.078146 3530.226402 3732.863903 0.938057548 0.978655138 0.890268167 0.823847211 0.789968472 0.907462512 0.913379818 0.738595946 0.945715272 1 11.86606719 -6.598387716 3.22783659 0.970660894 0.841099522 0.592678917 0.050842886 0.13201223 2.782737294 0.00829245 0.01213968 2.52E-07 6.598387716 -0.129561372 IQQLFT(ph)S(ph)PESSVT(ph)AAPRARK ddPTM_HeLa_CUDC101_4h_R1 1 IQQLFTSPESSVTAAPRARK 20 2 A6QRH7;Q5HY75;P98173-2;P98173 A6QRH7 FAM3A Protein FAM3A 3 0 IQQLFT(0.876)S(0.849)PES(0.273)S(0.003)VT(0.999)AAPRARK 65.231 0.0015191 0 1726.5 1324.8 1100.2 973.32 929.74 961.82 1194 768.81 1107.2 1319.9 TRUE FALSE FALSE 1524.122287 1365.615518 1159.68014 1013.016197 861.1549325 943.474886 1240.05298 856.3282228 1061.560747 1312.049176 1.161635032 1.040826474 0.883869417 0.772087064 0.656343488 0.719085003 0.945126907 0.652664731 0.809086097 1 10.35760608 -6.596567917 2.349281692 1.077411867 0.753552535 0.460747532 0.119671033 0.116637098 1.306360657 0.015455708 0.023227448 2.53E-07 6.596567917 -0.323859333 LQMEAPHIIVGTPGR ddPTM_HeLa_CUDC101_4h_R1 4 LQMEAPHIIVGTPGR 15 0 P60842;P60842-2;J3KT12;J3QS69;J3QL43;J3KTB5;J3KSZ0;J3QR64;J3QLN6;J3KS25;J3QKZ9 P60842 EIF4A1 Eukaryotic initiation factor 4A-I 0 0 ;;; ;;; 107.13 0.0057708 19567800 6813.27 6143.91 6002.55 6352.67 6668.94 6823.9 6171.94 5979.69 6403.37 6649.16 FALSE FALSE TRUE 6014.628819 6333.196585 6327.06601 6611.759341 6176.985583 6693.745477 6409.993793 6660.393739 6139.420378 6609.610501 0.909982338 0.958179999 0.957252475 1.000325109 0.93454608 1.012729188 0.969799021 1.007683242 0.928862658 1 12.69034954 -6.331789643 10.60096591 0.956446336 0.982899751 0.230608066 0.030228544 1.259718424 186.4742104 0.005848025 0.008935304 4.66E-07 6.331789643 0.026453415 SIYFSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SIYFSSPK 8 0 A2IDA3;P29372-5;P29372-4;P29372-2;P29372 A2IDA3 MPG DNA-3-methyladenine glycosylase 1 0 SIYFS(0.163)S(0.837)PK;SIYFS(0.033)S(0.967)PK ; 96.143 0.022375 46992000 6751.6 6900.1 5628.8 7685.6 7604 6820.8 5472.1 2768.3 6909.5 7814.6 TRUE FALSE FALSE 5960.187683 7112.683902 5933.109954 7999.051988 7043.068069 6690.704604 5683.16073 3083.432082 6624.687485 7768.118412 0.767262723 0.915625062 0.763776971 1.02972838 0.906663325 0.861303117 0.731600682 0.396934228 0.852804648 1 12.92334948 -4.254453171 1.774261403 0.891554356 0.22366959 0.773828794 0.080777444 0.389240148 1.185911366 0.014240739 0.438060974 5.57E-05 4.254453171 -0.667884766 down LQPFATEADVEEALR ddPTM_HeLa_CUDC101_4h_R1 1 LQPFATEADVEEALR 15 0 B1AHB1;P33992 B1AHB1 MCM5 DNA helicase;DNA replication licensing factor MCM5 0 0 150.22 0.0012064 2653100 568.26 457.06 605.13 463.22 584.8 474.29 362.14 523.82 501.08 282.36 FALSE FALSE TRUE 501.6494242 471.1414769 637.8451582 482.1121138 541.6604691 465.2437085 376.1078611 583.4495514 480.4252703 280.6805102 1.787261338 1.67856855 2.272495364 1.717654402 1.929811474 1.657556159 1.339985669 2.078696348 1.711644567 1 8.13278508 -9.060417251 0.722698038 0.966819457 1.805177529 0.099107598 0.321998403 0.395664824 0.356720363 0.192368586 0.050220069 8.70E-10 9.060417251 0.838358072 EGDRNVPPVPPASS(ph)T(ph)PY(ph)KPPYGK ddPTM_HeLa_CUDC101_4h_R1 1 EGDRNVPPVPPASSTPYKPPYGK 23 2 Q8WXH0-6 Q8WXH0-6 3 0 EGDRNVPPVPPAS(0.122)S(0.873)T(0.689)PY(0.658)KPPY(0.658)GK 49.089 0.0033774 0 992.32 668.45 557.51 817.84 635.21 618.71 480.12 594.03 685.03 844.52 TRUE FALSE FALSE 876.0017539 689.0441522 587.650677 851.1950502 588.3518238 606.9091376 498.6383892 661.651974 656.7927735 839.4967575 1.04348438 0.820782387 0.70000351 1.013934887 0.700838709 0.722943993 0.593972978 0.788153103 0.782364872 1 9.713380943 -6.593839496 0.674945338 1.027045493 0.692938216 0.190335989 0.130823554 0.344772693 0.317604049 0.024749908 0.048143781 2.55E-07 6.593839496 -0.334107277 DS(ph)DGVDGFEAEGK ddPTM_HeLa_CUDC101_4h_R1 2 DSDGVDGFEAEGK 13 0 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 DS(1)DGVDGFEAEGK;DS(1)DGVDGFEAEGK ; 250.05 6.70E-56 23881000 7695.9 6714.6 5822.8 5770.3 5901.7 6150.3 5792 4833.5 5448.2 7050.9 TRUE FALSE FALSE 6793.798268 6921.468867 6137.598181 6005.637775 5466.343349 6032.993275 6015.39938 5383.726102 5223.62289 7008.960933 0.969301774 0.987517113 0.875678755 0.85685137 0.779907807 0.860754302 0.858244102 0.768120432 0.745277787 1 12.77498487 -6.592478594 1.97152639 0.98646252 0.824495419 0.099177043 0.082224066 0.082312045 0.647527345 0.004964828 0.007608923 2.56E-07 6.592478594 -0.161967101 QFAVSSGS(ph)EK ddPTM_HeLa_CUDC101_4h_R1 1 QFAVSSGSEK 10 0 A0A087WVF7;Q9NZM3-2;Q9NZM3;H7C0L8 A0A087WVF7 ITSN2 Intersectin-2 1 0 QFAVS(0.007)S(0.007)GS(0.985)EK 114.89 0.0065414 19663000 1040.1 999.29 749.02 701.78 732.15 681.1 792.95 676.04 794.9 944.59 TRUE FALSE FALSE 918.1810547 1030.07694 789.5142869 730.4016218 678.1407531 668.1091523 823.5343471 752.997661 762.1338856 938.9715367 0.97785824 1.0970268 0.840828775 0.777874082 0.722216517 0.711532913 0.877059969 0.801938751 0.811668784 1 9.874937615 -6.592426655 5.701477351 0.997037635 0.779651615 0.562717538 0.079291302 0.066345763 3.948402861 0.008602426 0.012243953 2.56E-07 6.592426655 -0.217386019 ASVLDTSMSAGSGS(ph)PSKTVTPK ddPTM_HeLa_CUDC101_4h_R1 1 ASVLDTSMSAGSGSPSKTVTPK 22 1 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 ASVLDTSMS(0.001)AGS(0.091)GS(0.854)PS(0.052)KT(0.002)VTPK 89.079 0.0002922 56061000 1504.8 2136.1 1988.6 2092.9 3756.6 2253.3 2242.4 3247.8 2414.3 1560.8 TRUE FALSE FALSE 1328.409625 2201.910709 2096.109731 2178.257508 3479.483102 2210.322057 2328.890119 3617.516424 2314.781532 1551.516292 0.856200887 1.419199218 1.351007232 1.403954002 2.242633944 1.424620591 1.501041356 2.331600668 1.491947937 1 10.59946313 -6.592202036 1.01092663 0.930006638 1.814707958 0.380390704 0.347703534 0.234375398 0.478766804 0.054544871 0.093732231 2.56E-07 6.592202036 0.884701319 SRS(ph)PLHPMSEIPR ddPTM_HeLa_CUDC101_4h_R1 1 SRSPLHPMSEIPR 13 1 Q9NVW2-2;Q9NVW2 Q9NVW2-2 RLIM E3 ubiquitin-protein ligase RLIM 1 0 S(0.318)RS(0.682)PLHPMSEIPR 77.191 0.02084 59423000 3658.6 2751.1 2533.8 2232.3 3087.1 2296.5 1969.2 2083.4 3179 3335.7 TRUE FALSE FALSE 3229.744454 2835.85813 2670.784892 2323.342843 2859.370783 2252.698089 2045.152704 2320.565835 3047.960274 3315.859108 0.974029459 0.85524084 0.805457894 0.700675984 0.862331809 0.679370871 0.616779132 0.699838491 0.91920681 1 11.69516699 -6.592199385 0.624541575 1.002604137 0.666076977 0.759979785 0.061622064 0.200066269 0.158778472 0.013941735 0.027868875 2.56E-07 6.592199385 -0.336527161 LQQELDDLLVDLDHQR ddPTM_HeLa_CUDC101_4h_R1 3 LQQELDDLLVDLDHQR 16 0 P35579 P35579 MYH9 Myosin-9 0 0 ;; ;; 278.89 1.95E-86 580170000 6139.15 5774.49 5083.36 4791.51 6194.8 5619.93 5606.13 5615.75 5682.4 6318.24 FALSE FALSE TRUE 5419.528143 5952.395192 5358.181818 4986.928488 5737.821946 5512.739199 5822.360312 6255.02428 5448.169067 6280.658827 0.862891663 0.947734204 0.853124165 0.794013594 0.913570073 0.877732631 0.927030185 0.995918494 0.867451842 1 12.61670019 -9.384095984 0.998285444 1.00288977 0.891850451 0 0.066489138 0.51137525 0.872870792 0.042054139 0.009724475 4.13E-10 9.384095984 -0.11103932 LQQELDDLTVDLDHQR ddPTM_HeLa_CUDC101_4h_R1 3 LQQELDDLTVDLDHQR 16 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 0 ;; ;; 231.41 3.84E-43 9371900 4528.7 4196.6 4214.2 4008.6 4580.7 4157.12 4626.9 4561.1 4404.68 4513.5 FALSE FALSE TRUE 3997.852651 4325.892272 4442.032399 4172.088035 4242.790887 4077.829862 4805.361083 5080.317187 4223.117226 4486.653501 0.891054469 0.964169012 0.990054703 0.92988862 0.945647103 0.908880051 1.071034588 1.132317703 0.941262173 1 12.13142406 -4.618307246 4.423229854 0.948090123 1.119467644 0.794463 0.032164719 0.084737477 2.858580155 0.006058231 0.025456161 2.41E-05 4.618307246 0.171377521 MENLFVTWQQRS(ph)T(ph)PATMPISAGELETLK ddPTM_HeLa_CUDC101_4h_R1 1 MENLFVTWQQRSTPATMPISAGELETLK 28 1 Q5T011-5;Q5T011 Q5T011-5 SZT2 Protein SZT2 2 0 MENLFVT(0.317)WQQRS(0.472)T(0.47)PAT(0.6)MPIS(0.116)AGELET(0.025)LK 40.404 0.0032774 0 258.3 227.24 251.73 276.81 284.21 251.17 219.55 335.99 196.01 264.35 TRUE FALSE FALSE 228.0224656 234.2409951 265.3392852 288.0995083 263.2443945 246.3793507 228.018117 374.2377435 187.9303848 262.7776344 0.867739243 0.89140385 1.009748359 1.096362363 1.001776255 0.937596349 0.867722695 1.424161323 0.715168874 1 8.03769868 -6.59203398 5.675924093 0.932601134 1.044795139 0.21571256 0.15781496 0.326016939 19.32743115 0.021835877 0.03108468 2.56E-07 6.59203398 0.112194005 DHS(ph)PTPSVFNS(ph)DEERYR ddPTM_HeLa_CUDC101_4h_R1 2 DHSPTPSVFNSDEERYR 17 1 Q6UN15;Q6UN15-5;Q6UN15-3 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 0 DHS(0.997)PT(0.003)PSVFNS(1)DEERYR;DHS(0.96)PT(0.04)PSVFNS(0.999)DEERY(0.001)R ; 142.93 0.00020553 119092000 5191.7 5490.6 6876.3 7234 7736.1 6875.4 7989.2 7265 8128.5 8222 TRUE FALSE FALSE 4583.136796 5659.758878 7248.053578 7529.033788 7165.423315 6744.2632 8297.34612 8092.018234 7793.43979 8173.095178 0.560759014 0.692486598 0.886818692 0.921197371 0.876708659 0.825178596 1.015202434 0.99008002 0.95354815 1 12.99666682 -6.591792925 7.246109107 0.779387481 0.920592268 0.168440985 0.126169972 0.36226907 31.934433 0.027574837 0.039075753 2.56E-07 6.591792925 0.141204787 AEGDSAGTAGT(ph)PGGTPAGDK ddPTM_HeLa_CUDC101_4h_R1 1 AEGDSAGTAGTPGGTPAGDK 20 0 J3KMX2;B9EGA3;Q92925-3;Q92925-2;Q92925 J3KMX2 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 1 0 AEGDS(0.002)AGT(0.048)AGT(0.935)PGGT(0.015)PAGDK 314.72 4.57E-194 0 2457.6 1432.1 1806 1785.6 1621.1 1778.4 1435 1145.2 1614.5 2367.1 TRUE FALSE FALSE 2169.523853 1476.221304 1903.637823 1858.424486 1501.514683 1744.479983 1490.348431 1275.564939 1547.949627 2353.020384 0.9220166 0.627372935 0.809018841 0.789803819 0.638122259 0.741379036 0.633376762 0.54209685 0.657856446 1 11.2002981 -6.590480497 0.300651354 1.037786368 0.529480278 0.042591448 0.134221996 0.685214561 0.151120134 0.062050505 0.130675142 2.57E-07 6.590480497 -0.50830609 ASIQAASAESS(ph)GQK ddPTM_HeLa_CUDC101_4h_R1 1 ASIQAASAESSGQK 14 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 ASIQAASAES(0.087)S(0.913)GQK 164.15 7.79E-11 0 2213.8 1898.5 1643 1612.4 1815.9 2016 1689.6 895.89 1906.9 2041.1 TRUE FALSE FALSE 1954.30172 1956.990535 1731.82555 1678.160641 1681.944675 1977.548159 1754.768438 997.8744963 1828.296775 2028.959446 0.963203934 0.964529152 0.853553556 0.827104083 0.828969094 0.974661254 0.864861267 0.49181589 0.901100699 1 10.98652431 -4.254260261 2.702674061 0.949311216 0.397412382 0.768118889 0.066931764 0.173981267 1.650480115 0.010955379 0.215750864 5.57E-05 4.254260261 -0.551898834 down S(ph)SPAS(ph)SPELPWRPR ddPTM_HeLa_CUDC101_4h_R1 1 SSPASSPELPWRPR 14 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 2 0 S(0.877)S(0.123)PAS(0.553)S(0.448)PELPWRPR 75.376 0.039468 4607900 1232.3 1510.3 1621.3 1789.9 2174.9 2130.7 2151.5 1645.6 1711.7 1413.5 TRUE FALSE FALSE 1087.851662 1556.830553 1708.952382 1862.899859 2014.46196 2090.060447 2234.484076 1832.928452 1641.143002 1405.092439 0.774220707 1.107991552 1.216256194 1.325820143 1.433686428 1.487489641 1.590275496 1.304489585 1.167996465 1 10.45644933 -6.590438604 1.358840362 0.89484014 1.459016257 0.694976246 0.12723061 0.11502109 0.426734954 0.019870305 0.032111194 2.57E-07 6.590438604 0.564176117 NS(ph)FTPLSSSNTIR ddPTM_HeLa_CUDC101_4h_R1 2 NSFTPLSSSNTIR 13 0 O60825 O60825 PFKFB2 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 1 0 NS(0.912)FT(0.035)PLS(0.006)S(0.006)S(0.02)NT(0.02)IR;NS(0.587)FT(0.401)PLS(0.005)S(0.001)S(0.005)NTIR ; 125.33 0.0016546 29594000 2326.61 2433.9 2156.86 2457.34 2689.3 2987.4 2386.4 1628.5 2499.4 2499.8 TRUE FALSE FALSE 2053.888303 2508.885574 2273.466376 2557.560947 2490.915697 2930.420322 2478.444247 1813.881857 2396.373674 2484.931078 0.826537332 1.009639903 0.91490118 1.029228122 1.002408364 1.179276298 0.997389533 0.729952582 0.964362229 1 11.27899012 -6.589630661 1.862242726 0.920946133 0.997624151 0.005650432 0.114840962 0.7387312 5.178903115 0.020454235 0.031593378 2.57E-07 6.589630661 0.076678018 EGVQGPLNVSLS(ph)EEGK ddPTM_HeLa_CUDC101_4h_R1 1 EGVQGPLNVSLSEEGK 16 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 EGVQGPLNVS(0.17)LS(0.83)EEGK 208.07 1.93E-23 20325000 2841.9 2349.7 1934.1 1732.6 2004.3 1756.3 1556.9 1708.3 2377.4 2448.2 TRUE FALSE FALSE 2508.77679 2422.091472 2038.663296 1803.262917 1856.446782 1722.801504 1616.950155 1902.765967 2279.402566 2433.637998 1.03087509 0.995255447 0.83770195 0.740974179 0.762827826 0.707911984 0.664416876 0.781860724 0.936623511 1 11.24889887 -6.58888314 2.050272104 1.015657903 0.725836541 0.903501241 0.039606106 0.046558652 0.396105378 0.005126342 0.007833288 2.58E-07 6.58888314 -0.289821361 LQQQQRPEDAEDGAEGGGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 LQQQQRPEDAEDGAEGGGKR 20 2 Q08J23;Q08J23-2;A0A140T9Y7 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 1 LQQQQRPEDAEDGAEGGGK(1)R 70.615 0.024603 696880 435.87 296.23 232.04 325.09 220.46 285.84 266.01 164.39 407.81 400.64 FALSE TRUE FALSE 384.7779793 305.3564952 244.5847843 338.3485754 204.197105 280.3880782 276.2700948 183.1034931 390.9998992 398.2569755 0.966155028 0.766732321 0.614138105 0.849573507 0.512727002 0.704038085 0.693698069 0.459762175 0.981777905 1 8.637555821 -7.125972809 2.152897023 0.987662676 0.646038757 0.697555881 0.100984205 0.115950902 1.03651535 0.016599552 0.020696095 7.48E-08 7.125972809 -0.341623919 EWSLESSPAQNWT(ph)PPQPR ddPTM_HeLa_CUDC101_4h_R1 4 EWSLESSPAQNWTPPQPR 18 0 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHT6;E5RHC5;F8W1U7;Q8N6T3-3 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 EWSLESSPAQNWT(1)PPQPR;EWSLES(0.001)S(0.037)PAQNWT(0.961)PPQPR;EWSLES(0.002)S(0.007)PAQNWT(0.991)PPQPR;EWSLESS(0.008)PAQNWT(0.992)PPQPR ;;; 142.94 8.62E-05 42126900 6343.94 5707.33 5274.87 5195.75 5794.89 5603.02 5232.9 5006.08 6142.52 5964.51 TRUE FALSE FALSE 5600.31297 5883.166072 5560.045428 5407.655143 5367.41251 5496.151729 5434.734706 5575.951912 5889.322726 5929.032829 0.944557592 0.992264041 0.937766005 0.91206362 0.905276234 0.926989593 0.916630901 0.940448817 0.993302431 1 12.53358107 -6.588365743 4.862303054 0.974385855 0.919989938 0.737123207 0.017326412 0.111498422 5.189857765 0.003562784 0.005103609 2.58E-07 6.588365743 -0.054395918 QATVSWDSGGSDEAPPKPSRPGY(ph)PSPR ddPTM_HeLa_CUDC101_4h_R1 1 QATVSWDSGGSDEAPPKPSRPGYPSPR 27 2 Q05397-5;Q05397;Q05397-7;Q05397-2;E7ESA6;H0YBP1;H0YB16;H0YBZ1;E9PEI4;Q05397-6;B4DWJ1;E5RHK7;E5RG80;E5RJQ2 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 QATVSWDS(0.006)GGS(0.01)DEAPPKPS(0.225)RPGY(0.667)PS(0.092)PR 71.308 0.00021966 29627000 2069.3 1844.7 1495.5 1344.1 1635.4 1667 1495.7 1302.5 1690.1 1676 TRUE FALSE FALSE 1826.739791 1901.53302 1576.351254 1398.918208 1514.7598 1635.204752 1553.38965 1450.771335 1620.433363 1666.031077 1.096462014 1.141355072 0.946171578 0.839671136 0.909202608 0.981497149 0.93238936 0.870794882 0.972630934 1 10.7021996 -6.586149346 7.816946507 1.053818383 0.910500482 0.605788247 0.055767017 0.128816329 13.87731454 0.009210257 0.013045199 2.59E-07 6.586149346 -0.143317901 T(ph)SPQELSEELSR ddPTM_HeLa_CUDC101_4h_R1 1 TSPQELSEELSR 12 0 A0A1B0GVY1;Q96PU5-9;Q96PU5-4;Q96PU5-2;Q96PU5-6;Q96PU5-5;Q96PU5-7;Q96PU5;K7ERN1;Q96PU5-3 A0A1B0GVY1 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 T(0.845)S(0.155)PQELSEELSR 136.33 0.0065837 12483000 1849.5 1647.5 1250.1 1225.6 1282.4 1412.7 1207.4 1010.4 1501.6 1390.3 TRUE FALSE FALSE 1632.704414 1698.257522 1317.684187 1275.585265 1187.799907 1385.755101 1253.969822 1125.419852 1439.703412 1382.030434 1.181380941 1.228813404 0.953440789 0.922979143 0.859460022 1.002695069 0.907338791 0.814323494 1.041730614 1 10.43257367 -6.584356564 8.14448821 1.098734526 0.908227365 0.636589344 0.075569971 0.161940027 19.11378115 0.014531317 0.020576469 2.60E-07 6.584356564 -0.190507161 ALVVPEPEPDS(ph)DSNQER ddPTM_HeLa_CUDC101_4h_R1 4 ALVVPEPEPDSDSNQER 17 0 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 ALVVPEPEPDS(0.756)DS(0.244)NQER;ALVVPEPEPDS(1)DSNQER;ALVVPEPEPDS(0.981)DS(0.019)NQER;ALVVPEPEPDS(0.991)DS(0.009)NQER ;;; 192.23 7.94E-12 30069100 13794.7 12227.4 11489 11019.7 12045.1 11342.1 10619.1 14025.9 12215.8 12787.4 TRUE FALSE FALSE 12177.70618 12604.1117 12110.13009 11469.131 11156.55697 11125.76834 11028.68224 15622.55176 11712.25955 12711.33998 0.958019076 0.991564361 0.952702871 0.902275529 0.877685357 0.875263219 0.867625464 1.229024776 0.921402431 1 13.6338285 -6.583521321 5.477027781 0.980329229 0.936618585 0 0.101574445 0.565605603 34.08319122 0.014996919 0.021400265 2.61E-07 6.583521321 -0.043710644 DLDEDELLGNLSET(ph)ELK ddPTM_HeLa_CUDC101_4h_R1 2 DLDEDELLGNLSETELK 17 0 Q9NYL9;H0YNU8 Q9NYL9 TMOD3 Tropomodulin-3 1 0 DLDEDELLGNLS(0.369)ET(0.631)ELK;DLDEDELLGNLS(0.359)ET(0.641)ELK ; 148.44 0.00065214 11063100 5746.2 4097.1 3883.9 3883.5 4058.5 4166.3 3481.4 2403.8 4459.5 6070.8 TRUE FALSE FALSE 5072.639147 4223.326795 4093.875382 4041.885916 3759.112541 4086.834769 3615.678764 2677.438876 4275.677522 6034.690612 0.84057982 0.699841478 0.678390268 0.669775168 0.622917194 0.677223578 0.599148987 0.443674589 0.708516442 1 12.55906409 -6.583222506 0.182094452 1.133842401 0.31936723 0.438192216 0.104180642 0.953603624 0.103678658 0.149104508 0.263636598 2.61E-07 6.583222506 -0.814475171 KDGSS(ph)PPLLEK ddPTM_HeLa_CUDC101_4h_R1 1 KDGSSPPLLEK 11 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;Q6W2J9-3 H7BYY2 BCOR BCL-6 corepressor 1 0 KDGS(0.069)S(0.931)PPLLEK 142.85 0.0025784 44801000 3371.4 2958.8 2708.4 2960.4 2775.4 2575.2 3053.4 2711.7 3077.9 3105.5 TRUE FALSE FALSE 2976.209603 3049.957121 2854.824296 3081.137908 2570.664271 2526.082351 3171.170661 3020.388967 2951.027659 3087.028348 0.964101805 0.98799129 0.924780719 0.998091874 0.832731022 0.818289327 1.027256735 0.978413097 0.955944464 1 11.59200302 -6.58321484 1.348901081 0.983923746 0.922594719 0.105497704 0.063435508 0.610231861 2.229563403 0.011395644 0.018505266 2.61E-07 6.58321484 -0.061329027 YMPAVTSTPTVNQHETS(ph)TSK ddPTM_HeLa_CUDC101_4h_R1 1 YMPAVTSTPTVNQHETSTSK 20 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154;Q15154-4;Q15154-2 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 YMPAVTSTPTVNQHET(0.192)S(0.548)T(0.192)S(0.068)K 82.216 0.0020457 7182800 879.09 693.4 570.61 570.87 920.42 658.08 510.13 563.81 1046.7 836.28 TRUE FALSE FALSE 776.0444028 714.7628321 601.4589026 594.1525461 852.5224503 645.5282204 529.805885 627.9918514 1003.554583 831.3057694 0.93352462 0.859807376 0.723511041 0.714722029 1.025522114 0.776523205 0.637317705 0.755428237 1.207202716 1 9.699235414 -6.582925781 0.254000663 1.03936351 0.655023119 0.517738652 0.116217584 1.753995352 0.299212627 0.121490428 0.24476528 2.61E-07 6.582925781 -0.384340392 FEDEDS(ph)DDVPR ddPTM_HeLa_CUDC101_4h_R1 2 FEDEDSDDVPR 11 0 P49756 P49756 RBM25 RNA-binding protein 25 1 0 FEDEDS(1)DDVPR;FEDEDS(1)DDVPR ; 138.42 2.26E-05 0 2598.4 2293.1 1962.55 1834.1 1834.69 2334.9 2071.65 2071.94 2137.47 2131.81 TRUE FALSE FALSE 2293.819491 2363.747693 2068.651389 1908.902526 1699.348574 2290.365673 2151.554234 2307.801275 2049.362582 2119.129899 1.082434584 1.115433128 0.976179606 0.900795428 0.801908639 1.080804756 1.015300778 1.089032473 0.967077376 1 11.04925631 -6.580298346 21.13144537 1.045756098 0.971925766 0.111867824 0.087120329 29.10989693 10712.2465 0.014091332 0.019928167 2.63E-07 6.580298346 -0.073830332 LKDLGHPVEEEDELES(ph)GDQEDEDDESEDPGKDLDHI ddPTM_HeLa_CUDC101_4h_R1 3 LKDLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 36 2 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 1 0 LKDLGHPVEEEDELES(0.997)GDQEDEDDES(0.003)EDPGKDLDHI;LKDLGHPVEEEDELES(0.999)GDQEDEDDES(0.001)EDPGKDLDHI;LKDLGHPVEEEDELES(0.975)GDQEDEDDES(0.025)EDPGKDLDHI ;; 102.51 2.00E-13 168487000 6973.4 6180.8 6253.7 6702.2 8044.1 7527 6394.2 7084.3 6660.8 5894.6 TRUE FALSE FALSE 6155.988623 6371.223122 6591.793938 6975.544685 7450.702769 7383.435016 6640.826436 7890.748076 6386.239005 5859.538657 1.050592714 1.087325043 1.124968078 1.190459709 1.27155109 1.260071048 1.133336057 1.346650059 1.089887682 1 12.51657137 -6.579419988 0.814059858 1.016166387 1.254331935 0.714533536 0.055454505 0.177212797 0.235185132 0.009891406 0.018259535 2.63E-07 6.579419988 0.238165548 LQSIGTENTEENR ddPTM_HeLa_CUDC101_4h_R1 2 LQSIGTENTEENR 13 0 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8;H3BR04;H3BMQ8 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 244.73 7.15E-55 39949000 2504.2 1945.28 2328.84 1929.27 1978.11 1994.51 2037.01 1686.14 2094.78 2301.6 FALSE FALSE TRUE 2210.661472 2005.211771 2454.744135 2007.95397 1832.188766 1956.468045 2115.578158 1878.083362 2008.432282 2287.909981 0.966236211 0.876438229 1.072919894 0.877636789 0.800813311 0.855133314 0.924677184 0.820872927 0.87784585 1 11.15981457 -6.071723595 8.96715465 0.979835005 0.853933128 0.386648127 0.062667613 0.215354549 25.64306868 0.007719396 0.012830129 8.48E-07 6.071723595 -0.125901876 LQSIGTENTEENRR ddPTM_HeLa_CUDC101_4h_R1 4 LQSIGTENTEENRR 14 1 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8;H3BR04;H3BMQ8 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;; ;;; 136.33 0.00066853 601792000 9397.6 8698 8626.6 8483.3 9713.2 8526.6 8097.3 8614 9453.7 11168.8 FALSE FALSE TRUE 8296.027574 8965.97507 9092.98009 8829.285642 8996.676587 8363.969311 8409.615573 9594.582941 9064.014485 11102.36748 0.747230497 0.807573257 0.819012711 0.79526152 0.81033857 0.753350069 0.757461468 0.864192521 0.816403754 1 13.43857973 -9.340240277 0.91867972 1.008085577 0.790360382 0.13105647 0.06511216 0.188040347 0.267074476 0.028785291 0.00653129 4.57E-10 9.340240277 -0.217725195 GYTS(ph)DDDTWEPEIHLEDCK ddPTM_HeLa_CUDC101_4h_R1 3 GYTSDDDTWEPEIHLEDCK 19 0 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 GYT(0.161)S(0.839)DDDTWEPEIHLEDCK;GYT(0.171)S(0.827)DDDT(0.001)WEPEIHLEDCK;GYT(0.13)S(0.87)DDDTWEPEIHLEDCK ;; 206.74 2.81E-24 118218000 10272.6 9313.3 7276.9 7884.6 6738.5 8212.7 7165.3 6133.5 6959.2 9485.6 TRUE FALSE FALSE 9068.4614 9600.231734 7670.311225 8206.168068 6241.41428 8056.056431 7441.668021 6831.712848 6672.33883 9429.179229 0.961744515 1.018140763 0.813465418 0.870295056 0.661925511 0.854375151 0.789216945 0.724528899 0.707626684 1 13.20291648 -6.579208569 2.037106185 0.984763286 0.775349662 0.190394535 0.106132154 0.115230167 0.966335469 0.009115858 0.013991764 2.64E-07 6.579208569 -0.209413623 GT(ph)PSQS(ph)PVVGR ddPTM_HeLa_CUDC101_4h_R1 3 GTPSQSPVVGR 11 0 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 0 GT(1)PS(0.394)QS(0.606)PVVGR;GT(1)PS(0.111)QS(0.889)PVVGR;GT(1)PS(0.007)QS(0.993)PVVGR ;; 140.33 0.0051551 169872000 19025.4 14434.4 13591.9 13269.8 12930.6 12977.6 13413.2 10771.4 14783.1 15645.5 TRUE FALSE FALSE 16795.27145 14879.10676 14326.71923 13810.9998 11976.7354 12730.0739 13930.55162 11997.57264 14173.73436 15552.43987 1.079912322 0.956705628 0.921187887 0.888027854 0.770087234 0.81852584 0.895714867 0.771427039 0.911351176 1 13.92485331 -6.578358514 1.405903815 1.036902925 0.823234286 0.605211549 0.058387665 0.124619667 0.494860621 0.008274439 0.01337246 2.64E-07 6.578358514 -0.213668639 DLLSDLQDISDS(ph)ER ddPTM_HeLa_CUDC101_4h_R1 1 DLLSDLQDISDSER 14 0 P21127;P21127-8;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-9;P21127-2;P21127-3;P21127-6;P21127-10;P21127-5;Q9UQ88-9;E7ESP2;J3KS35;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 DLLSDLQDIS(0.267)DS(0.733)ER 121.79 0.0002231 0 539.45 899.34 453.36 488.35 538.81 374.47 587.26 306.07 572.52 710.4 TRUE FALSE FALSE 476.2164888 927.0475994 477.8700129 508.2670238 499.0630598 367.3276087 609.9108149 340.9117716 548.9204833 706.1745092 0.674360916 1.312774091 0.676702439 0.719747056 0.706713501 0.520165489 0.863682853 0.482758535 0.77731563 1 9.463880935 -6.57828285 24.99998042 0.882530821 0.668303488 0.33022978 0.187611272 100.9690539 45559.75801 0.030850082 0.043628607 2.64E-07 6.57828285 -0.214227333 (ac)ASPPES(ph)DGFSDVRK ddPTM_HeLa_CUDC101_4h_R1 1 ASPPESDGFSDVRK 14 1 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 AS(0.336)PPES(0.664)DGFSDVRK 75.387 0.00096708 21959000 3287.5 3108.4 2532 2593.3 2672.8 2815.6 2520.1 2484.4 3203 2840.1 TRUE FALSE FALSE 2902.144234 3204.16612 2668.887579 2699.065983 2475.632869 2761.897121 2617.301101 2767.214054 3070.970984 2823.206959 1.027960145 1.134938446 0.945338977 0.956028383 0.876886783 0.978283619 0.92706668 0.980166914 1.087759781 1 11.46311918 -6.577317551 24.9999831 1.023532803 0.941944126 0.530018734 0.049541315 63.1488942 28999.63819 0.007072287 0.010001726 2.65E-07 6.577317551 -0.081588677 LQTSSVLVSGLR ddPTM_HeLa_CUDC101_4h_R1 2 LQTSSVLVSGLR 12 0 P22314;P22314-2;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 ; ; 132.03 0.0045487 2727000 450.432 243.96 230.62 262.25 204.78 245.9 289.29 362.37 315.6 112.26 FALSE FALSE TRUE 397.6330438 251.4761184 243.0880148 272.9456885 189.6737874 241.2098672 300.4480122 403.6207361 302.5908344 111.5922725 3.563266835 2.253526277 2.178358853 2.445919259 1.6997036 2.161528408 2.692372916 3.616923707 2.711575162 1 6.802093318 -4.354333593 2.445269769 2.214092835 3.786124769 0.306199129 0.62255101 0.59672751 4.992070984 0.130703336 1.78591289 4.42E-05 4.354333593 1.572031934 LQVVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 LQVVKR 6 1 F8WCC1;E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2 F8WCC1 CHTF18 Chromosome transmission fidelity protein 18 homolog 0 1 ; LQVVK(1)R;LQVVK(1)R 129.96 0.0010024 16720700 6979.7 6454.2 5720.4 7414.9 7712.5 7070.5 7169.6 8026 3865.1 3086.3 FALSE TRUE FALSE 6161.550147 6653.046252 6029.662127 7717.311672 7143.56424 6935.641993 7446.133874 8939.647398 3705.778942 3067.94255 2.008365556 2.168569373 1.965376479 2.515468118 2.328454371 2.260681834 2.42707735 2.913890091 1.20790363 1 11.58305575 -9.328413916 0.200894403 4.28E-12 2.802372247 0.898585437 0.175957198 1.634912493 0.101342424 1.246511704 0.277684088 4.69E-10 9.328413916 2.802372247 AQPSSS(ph)EDELDNVFFK ddPTM_HeLa_CUDC101_4h_R1 2 AQPSSSEDELDNVFFK 16 0 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 AQPS(0.009)S(0.033)S(0.957)EDELDNVFFK;AQPS(0.035)S(0.183)S(0.782)EDELDNVFFK ; 165.16 2.47E-05 32640000 8371.5 7159.8 6421.8 6294 6840.3 6261.2 6047.7 5126 8148.8 8408.4 TRUE FALSE FALSE 7390.20546 7380.384952 6768.981933 6550.696525 6335.704697 6141.778042 6280.961815 5709.52312 7812.903015 8358.386463 0.884166519 0.88299159 0.809843139 0.783727404 0.758005714 0.734804267 0.751456258 0.683089152 0.934738188 1 13.02900875 -6.576498831 0.224131939 1.043716146 0.609505157 0.929516957 0.0251248 0.367870976 0.052381061 0.029201674 0.056460535 2.65E-07 6.576498831 -0.434210989 LRAETEQGEQQR ddPTM_HeLa_CUDC101_4h_R1 2 LRAETEQGEQQR 12 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 168.83 1.33E-06 10133300 1904.89 1947.47 1966.77 1918.68 2085.7 1770.19 2010.45 1871.13 2279.6 1988.5 FALSE FALSE TRUE 1681.601682 2007.469242 2073.099535 1996.932064 1931.842066 1736.426575 2087.99373 2084.131876 2185.633923 1976.672314 0.850723547 1.015580189 1.048782604 1.010249423 0.977320344 0.878459501 1.056317588 1.054363873 1.105713834 1 10.94885801 -7.209956345 24.98487345 0.929508265 1.003628868 0 0.081338617 441.2251579 214128.0455 0.01228118 0.015041309 6.17E-08 7.209956345 0.074120603 HGS(ph)GADSDYENTQSGDPLLGLEGKR ddPTM_HeLa_CUDC101_4h_R1 1 HGSGADSDYENTQSGDPLLGLEGKR 25 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 HGS(0.992)GADS(0.004)DY(0.002)ENT(0.001)QS(0.001)GDPLLGLEGKR 55.153 0.0059863 11118000 1247.9 1227.8 945.76 1182.4 1878.7 1537.9 1452.9 1273.5 1122 871.01 TRUE FALSE FALSE 1101.623054 1265.627063 996.8906464 1230.623383 1740.112044 1508.56712 1508.93884 1418.470092 1075.750685 865.8291938 1.272332998 1.461751431 1.151371025 1.421323503 2.009763654 1.742338016 1.742767339 1.638279354 1.24245139 1 9.757938636 -6.575817979 0.442656922 1.043324633 1.843786552 0.638303873 0.178803897 0.45715567 0.19104943 0.06618551 0.145804868 2.66E-07 6.575817979 0.800461919 EEGSLS(ph)DTEADAVSGQLPDPTTNPSAGK ddPTM_HeLa_CUDC101_4h_R1 4 EEGSLSDTEADAVSGQLPDPTTNPSAGK 28 0 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 EEGS(0.241)LS(0.747)DT(0.012)EADAVSGQLPDPTTNPSAGK;EEGS(0.044)LS(0.726)DT(0.23)EADAVSGQLPDPTTNPSAGK;EEGS(0.225)LS(0.687)DT(0.088)EADAVSGQLPDPTTNPSAGK;EEGS(0.243)LS(0.744)DT(0.013)EADAVSGQLPDPTTNPSAGK ;;; 173.04 1.09E-18 136287000 19471.1 15283.2 14597.3 13724.9 13365.6 13630.3 12523.1 10771.5 15967.6 18370.7 TRUE FALSE FALSE 17188.72717 15754.05728 15386.47419 14284.66075 12379.64632 13370.32474 13006.12016 11997.68402 15309.40877 18261.43026 0.941258539 0.862695695 0.842566764 0.782231213 0.677912197 0.732161969 0.712218045 0.656995857 0.838346644 1 14.15651214 -6.575671668 0.625281723 0.988346637 0.674843909 0.755992215 0.052956632 0.094283448 0.074837352 0.006069084 0.012294701 2.66E-07 6.575671668 -0.313502728 LRDADPILR ddPTM_HeLa_CUDC101_4h_R1 2 LRDADPILR 9 1 P31327-2;P31327;P31327-3 P31327-2 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" 0 0 ; ; 120.31 0.0069972 16826100 9757.3 8478 7195.2 7657.4 8238.7 8005.1 6531 6649.1 6354.4 5181.3 FALSE FALSE TRUE 8613.564085 8739.197131 7584.194276 7969.70187 7630.947515 7852.416055 6782.902858 7406.006667 6092.468942 5150.481397 1.672380389 1.696772876 1.472521439 1.547370286 1.481598889 1.524598469 1.316945414 1.437925137 1.182893107 1 12.33049157 -9.365353831 1.075349799 0.998360659 1.526946122 0.676251559 0.116024679 0.208582092 0.429477621 0.083261871 0.0213155 4.31E-10 9.365353831 0.528585464 LRDDFEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 LRDDFEKK 8 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 1 LRDDFEK(1)K 112.3 0.0062032 2783400 2496.8 1751.5 1838.4 1771.6 2682.9 2391.5 2774.5 2247.4 2708.4 2534.1 FALSE TRUE FALSE 2204.128889 1805.461639 1937.789465 1843.853506 2484.987812 2345.886122 2881.513394 2503.234932 2596.758606 2519.02706 0.874992144 0.716729751 0.769261075 0.731970503 0.986487145 0.931266741 1.143899341 0.993730862 1.030857765 1 11.2986509 -4.995699445 2.605678244 0.895691201 1.067106734 0.296640241 0.11257584 0.316077311 4.25022347 0.017701518 0.062534922 1.01E-05 4.995699445 0.171415533 LRDLEDSLAR ddPTM_HeLa_CUDC101_4h_R1 3 LRDLEDSLAR 10 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;; ;; 167.09 1.25E-05 172324300 14901.4 14038 13284.8 14324.9 15669.5 14706.9 13805.8 16000 14705.1 12778.9 FALSE FALSE TRUE 13154.68048 14470.49414 14003.01647 14909.13134 14513.5922 14426.39039 14338.29433 17821.37533 14098.94955 12702.89053 1.035565917 1.139149716 1.102348826 1.173680219 1.142542492 1.135677769 1.12874265 1.402938589 1.109900893 1 13.6328692 -1 0.201778782 0.985441987 2.492110873 0.550804942 0.068075021 20.08421638 0.231369308 0.05386814 9.669039823 0.1 1 1.506668886 VDEDSAEDT(ph)QSNDGKEVVEVGQK ddPTM_HeLa_CUDC101_4h_R1 1 VDEDSAEDTQSNDGKEVVEVGQK 23 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 VDEDS(0.001)AEDT(0.87)QS(0.129)NDGKEVVEVGQK 106 1.53E-05 20132000 2020.2 1649.8 1531.6 1377.9 1047.2 1226.4 1405.6 1435.5 1294.2 1918.4 TRUE FALSE FALSE 1783.395218 1700.628383 1614.402929 1434.096718 969.9501423 1203.008463 1459.814463 1598.911518 1240.852528 1906.989271 0.93518891 0.891787074 0.846571584 0.752021387 0.50862905 0.630841757 0.765507433 0.838448093 0.650686685 1 10.89708101 -6.570497073 1.492635159 0.968887417 0.686088823 0.165928501 0.131205035 0.171323854 0.767159382 0.015504664 0.024903598 2.69E-07 6.570497073 -0.282798594 LREEWQR ddPTM_HeLa_CUDC101_4h_R1 2 LREEWQR 7 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;H0YDG6;U3KQE6;H0YDQ3 E9PMS6 LMO7 LIM domain only protein 7 0 0 ; ; 104.45 0.020845 15678100 4425.4 3575.2 3489.3 3903.4 3611.8 3575.4 3117.9 3534.3 3874.2 3289.8 FALSE FALSE TRUE 3906.66132 3685.347674 3677.942113 4062.597524 3345.36471 3507.205202 3238.158447 3936.630426 3714.503836 3270.232123 1.194612851 1.126937641 1.124673104 1.242296379 1.022974695 1.072463688 0.990192233 1.203777065 1.135853266 1 11.67517733 -3.970259437 11.82218693 1.097172749 1.443169761 0.13343874 0.077908362 85944.2164 1155526.046 0.012671516 541225.9914 0.000107088 3.970259437 0.345997012 LREQLQLLEEQHR ddPTM_HeLa_CUDC101_4h_R1 2 LREQLQLLEEQHR 13 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 143.76 0.00035187 31288000 14972.4 13359.9 12332.8 13502.6 13936.2 13670.7 12366.3 13065.7 13142.5 11428.8 FALSE FALSE TRUE 13217.35797 13771.50268 12999.54847 14053.29439 12908.15429 13409.95417 12843.27233 14553.04647 12600.76059 11360.82099 1.163415741 1.21219256 1.144243755 1.236996376 1.136199074 1.180368407 1.130488047 1.280985458 1.109141725 1 13.47177947 -8.997198631 0.558236396 0.979256071 1.188561236 0.423822932 0.055564897 0.427732957 0.217808238 0.045541199 0.010426401 1.01E-09 8.997198631 0.209305165 LREQVEER ddPTM_HeLa_CUDC101_4h_R1 1 LREQVEER 8 1 O00567;A0A494C128;H0Y653;H0YDU4 O00567 NOP56 Nucleolar protein 56 0 0 93.649 0.030676 5662000 1766.5 1387 1376.4 1526.1 1699.4 1592.1 1171.9 1195.1 1253.9 1452.8 FALSE FALSE TRUE 1559.433548 1429.731826 1450.812347 1588.340954 1574.038648 1561.733345 1217.100576 1331.145353 1202.213711 1444.158681 1.079821469 0.990010201 1.004607296 1.099838249 1.089934692 1.081413951 0.842774822 0.921744522 0.832466492 1 10.49601356 -4.7617114 24.99999861 1.043189111 0.882259643 0.310356344 0.078677411 3.041378199 279665.3961 0.006582906 0.021746865 1.73E-05 4.7617114 -0.160929468 AGEPDGES(ph)LDEQPSSSSSK ddPTM_HeLa_CUDC101_4h_R1 2 AGEPDGESLDEQPSSSSSK 19 0 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 AGEPDGES(1)LDEQPSSSSSK;AGEPDGES(1)LDEQPSSSSSK ; 321.6 1.00E-167 162006000 7492.1 6237.9 5885.7 5609.8 5523 5830.6 5884.6 5081.2 5311.6 6759.2 TRUE FALSE FALSE 6613.887395 6430.082305 6203.898745 5838.591892 5115.579293 5719.391019 6111.570993 5659.623269 5092.6536 6718.995978 0.984356505 0.957000469 0.923337172 0.86896791 0.761360672 0.851227034 0.90959587 0.842331695 0.757948601 1 12.71402995 -6.569191364 1.645392772 0.992161609 0.844676356 0 0.081805587 0.123004944 0.670209824 0.00610813 0.009672632 2.70E-07 6.569191364 -0.147485253 IEDVGS(ph)DEEDDSGKDKK ddPTM_HeLa_CUDC101_4h_R1 2 IEDVGSDEEDDSGKDKK 17 2 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 0 IEDVGS(0.648)DEEDDS(0.352)GKDKK;IEDVGS(0.999)DEEDDS(0.001)GKDKK ; 81.639 0.0093737 17010850000 17090.1 13920.6 12394.3 13153.8 13115.2 12366.7 11975.4 11983.6 14965.2 14473.4 TRUE FALSE FALSE 15086.82438 14349.47719 13064.37335 13690.26882 12147.71783 12130.8258 12437.29519 13347.76458 14348.32812 14387.31157 1.04862012 0.997370295 0.908048268 0.951551563 0.844335494 0.843161402 0.864462768 0.927745571 0.997290428 1 13.81250941 -6.568319099 1.4039137 1.023513747 0.87407401 0.748763822 0.034538435 0.134582717 0.532461878 0.006229897 0.010119453 2.70E-07 6.568319099 -0.149439737 SSGNSS(ph)SSGSGSGSTSAGSSSPGAR ddPTM_HeLa_CUDC101_4h_R1 1 SSGNSSSSGSGSGSTSAGSSSPGAR 25 0 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNS(0.041)S(0.305)S(0.305)S(0.305)GS(0.018)GS(0.006)GS(0.018)T(0.003)SAGSSSPGAR 236.19 1.57E-49 4665500 1322.2 1235 974.96 1166.5 1062.3 827.35 1045 1153.1 988.5 1278 TRUE FALSE FALSE 1167.21372 1273.048886 1027.669287 1214.074912 983.9362454 811.5696772 1085.306 1284.364243 947.7536116 1270.398399 0.918777701 1.002086343 0.808934652 0.955664706 0.774509985 0.638830841 0.854303658 1.010993279 0.746028657 1 10.31106528 -6.567123579 1.149813783 0.965904899 0.821382623 0 0.121725065 0.458026387 1.211454927 0.018474701 0.031234144 2.71E-07 6.567123579 -0.144522276 KDASS(ph)SPASTASSASSTSLK ddPTM_HeLa_CUDC101_4h_R1 1 KDASSSPASTASSASSTSLK 20 1 A0A669KBK8;Q04724 A0A669KBK8 TLE1 Transducin-like enhancer protein 1 1 0 KDAS(0.225)S(0.384)S(0.244)PAS(0.102)T(0.041)AS(0.002)S(0.001)ASSTSLK 62.1 0.011443 10394000 799.63 995.57 780.27 686.59 868.87 690.97 874.63 806.85 980.82 880.07 TRUE FALSE FALSE 705.8985836 1026.242332 822.4537564 714.5921079 804.7751911 677.7908985 908.3647721 898.6985426 940.3901845 874.8353045 0.806893115 1.173069178 0.940124104 0.816830441 0.919916225 0.774763998 1.038326605 1.027277406 1.074933967 1 9.772867632 -6.566541926 0.001660797 1.848047004 0.000157988 0 0.126375249 1272016.299 1093.416722 606435.6757 610143.8071 2.71E-07 6.566541926 -1.847889016 DLLHPS(ph)PEEEKR ddPTM_HeLa_CUDC101_4h_R1 2 DLLHPSPEEEKR 12 1 P42677 P42677 RPS27 40S ribosomal protein S27 1 0 DLLHPS(1)PEEEKR;DLLHPS(1)PEEEKR ; 83.692 0.015855 31348000 6160.7 5705.5 5039.6 5057.5 4977.5 5511.5 4699.2 5170.9 5440 5798.4 TRUE FALSE FALSE 5438.552085 5881.279692 5312.05602 5263.76671 4610.319742 5406.37732 4880.449718 5759.534355 5215.760897 5763.910859 0.943552428 1.020362708 0.921606206 0.913228334 0.799859653 0.937970321 0.846725398 0.999240706 0.904899646 1 12.49283231 -6.566514902 5.398224328 0.976162735 0.895113379 0.228605111 0.057555916 0.156831481 10.84125197 0.008030143 0.0115121 2.71E-07 6.566514902 -0.081049356 LRGWEAFLNAPEANR ddPTM_HeLa_CUDC101_4h_R1 1 LRGWEAFLNAPEANR 15 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 0 0 102.62 0.00081118 0 701.94 594.72 594.49 629.53 694.3 675.98 652.56 693.05 709.66 743.85 FALSE FALSE TRUE 619.6596573 613.0426183 626.6299276 655.2049545 643.0828722 663.0868078 677.7294578 771.9440106 680.4075144 739.4255471 0.838028466 0.829079575 0.847455068 0.886099969 0.869706051 0.896759397 0.916562135 1.043978009 0.920183942 1 9.530261079 -4.260782647 3.737909971 0.901934031 1.059031958 0.462183992 0.048609592 0.286922717 7.526488963 0.009841558 0.12426655 5.49E-05 4.260782647 0.157097927 ESVSTEDLSPPS(ph)PPLPK ddPTM_HeLa_CUDC101_4h_R1 2 ESVSTEDLSPPSPPLPK 17 0 Q13127-4;Q13127 Q13127-4 REST RE1-silencing transcription factor 1 0 ESVSTEDLS(0.205)PPS(0.795)PPLPK;ESVSTEDLS(0.001)PPS(0.999)PPLPK ; 192.96 2.51E-12 44581000 7546.3 5624.1 5663.8 4770.3 5522.7 4915.4 4145.7 4927.2 6266.2 6572.2 TRUE FALSE FALSE 6661.734153 5797.371855 5970.00216 4964.853453 5115.301424 4821.646935 4305.601038 5488.092532 6007.904584 6533.108262 1.019688315 0.887383405 0.913807321 0.759952729 0.782981273 0.738032609 0.659043271 0.840043102 0.919608912 1 12.67355383 -6.563720298 1.085929545 1.010274641 0.739727565 0.7328634 0.057383803 0.115463674 0.272194485 0.008455027 0.014514832 2.73E-07 6.563720298 -0.270547076 SSSSSASPSS(ph)PSSR ddPTM_HeLa_CUDC101_4h_R1 7 SSSSSASPSSPSSR 14 0 E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SSSSSAS(0.002)PS(0.096)S(0.845)PS(0.002)S(0.055)R;SSSSSASPS(0.002)S(0.979)PS(0.018)S(0.001)R;SSSSSASPS(0.005)S(0.958)PS(0.033)S(0.004)R;SSSSS(0.001)AS(0.005)PS(0.115)S(0.789)PS(0.066)S(0.025)R;SSSSS(0.005)AS(0.015)PS(0.073)S(0.782)PS(0.109)S(0.016)R;SSSSSAS(0.014)PS(0.108)S(0.873)PS(0.004)S(0.001)R;SSSSSAS(0.002)PS(0.008)S(0.858)PS(0.116)S(0.017)R ;;;;;; 198.29 1.60E-16 432158430 16400.82 6000.04 14063.34 14494.93 10195.39 8899.33 9966.38 3997.7 15740.48 18952.59 TRUE FALSE FALSE 14478.34074 6184.894121 14823.6467 15086.0959 9443.296392 8729.590108 10350.78662 4452.782009 15091.65075 18839.85915 0.768495169 0.328287705 0.786823648 0.800754176 0.501240286 0.463357504 0.549408917 0.236349007 0.801049022 1 14.20150056 -6.562537766 0.134688461 1.288998546 5.28E-20 0.486053669 0.165898868 4.348235448 0.322784654 1.120019419 1.776736149 2.74E-07 6.562537766 -1.288998546 SGCSEAQPPES(ph)PETR ddPTM_HeLa_CUDC101_4h_R1 2 SGCSEAQPPESPETR 15 0 A0A494BZT8;Q9Y6A5;H0Y8F2;A0A494C117 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 SGCSEAQPPES(0.967)PET(0.033)R;SGCSEAQPPES(0.925)PET(0.075)R ; 181.51 1.28E-10 90710000 2767.86 2471.45 2444.02 3684.21 3753.31 4101.75 3120.58 1475.75 1951.38 2014.8 TRUE FALSE FALSE 2443.415647 2547.592445 2576.151114 3834.468008 3476.435799 4023.515953 3240.941816 1643.743415 1870.94329 2002.81588 1.21999015 1.272005315 1.286264574 1.914538449 1.735774034 2.008929524 1.61819259 0.820716188 0.934156409 1 10.96781408 -6.562354807 2.618082672 1.116134926 1.64600375 0.367391604 0.314809631 0.221094519 3.073280507 0.050395343 0.075936294 2.74E-07 6.562354807 0.529868824 MEIGDTLSTAEES(ph)SPPK ddPTM_HeLa_CUDC101_4h_R1 2 MEIGDTLSTAEESSPPK 17 0 Q9BYW2;C9JG86;Q9BYW2-3;Q9BYW2-2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 MEIGDTLSTAEES(0.5)S(0.5)PPK;MEIGDTLS(0.001)T(0.001)AEES(0.553)S(0.446)PPK ; 325.08 3.75E-167 79042000 6013.4 5057.3 4013.9 4274.6 4042.2 3977.1 3665.8 3362.7 5012.3 5510.5 TRUE FALSE FALSE 5308.518368 5213.109419 4230.903575 4448.936664 3744.014959 3901.243444 3807.191134 3745.496175 4805.690872 5477.723301 0.969110354 0.951692726 0.772383588 0.812187184 0.683498372 0.712201626 0.695031663 0.683768779 0.877315375 1 12.41936068 -6.562075772 1.011528374 0.991116966 0.692369204 0.837325427 0.048034517 0.070674512 0.144485756 0.00550459 0.009632186 2.74E-07 6.562075772 -0.298747762 KS(ph)KSPPKVPIVIQDDSLPAGPPPQIR ddPTM_HeLa_CUDC101_4h_R1 1 KSKSPPKVPIVIQDDSLPAGPPPQIR 26 3 Q7Z422-4;Q7Z422-5;Q7Z422 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 KS(0.545)KS(0.455)PPKVPIVIQDDSLPAGPPPQIR 76.02 0.00012239 216300000 1783.4 1692.6 1586.4 1629 2346.9 1644 1616.3 1850 1925.5 1616.6 TRUE FALSE FALSE 1574.352555 1744.747 1672.165583 1695.437661 2173.773863 1612.643439 1678.641232 2060.596522 1846.130075 1606.984391 0.979693744 1.085727409 1.040561185 1.055043017 1.352703781 1.003521533 1.044590876 1.282275381 1.148816432 1 10.6501402 -6.561096731 1.200248002 0.991711644 1.147392781 0.096010928 0.113327334 0.393972137 1.135861981 0.017476078 0.029365174 2.75E-07 6.561096731 0.155681137 LESPTVSTLTPS(ph)SPGK ddPTM_HeLa_CUDC101_4h_R1 1 LESPTVSTLTPSSPGK 16 0 A0A087WTV6;A0A087WZR9;Q96C36 A0A087WTV6 PYCR2 Pyrroline-5-carboxylate reductase;Pyrroline-5-carboxylate reductase 2 1 0 LESPTVSTLT(0.135)PS(0.864)S(0.001)PGK 249.36 7.80E-56 10842000 3054.4 2441.3 2228 2035.6 2244.9 2343.3 2041.4 1954.7 2234.3 2426.3 TRUE FALSE FALSE 2696.367862 2516.513559 2348.452419 2118.620567 2079.298199 2298.605457 2120.137482 2177.215147 2142.201208 2411.86826 1.117958185 1.043387652 0.973706756 0.878414714 0.862111018 0.953039391 0.879043651 0.902708984 0.888191633 1 11.23593539 -6.560549035 2.753921375 1.056572564 0.896040439 0.364061175 0.063768048 0.111272147 1.716078022 0.007893995 0.011851961 2.75E-07 6.560549035 -0.160532124 (ac)MSKDIKSVEHS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 MSKDIKSVEHSPK 13 2 A6NIV6 A6NIV6 LRRIQ4 Leucine-rich repeat and IQ domain-containing protein 4 1 0 MSKDIKS(0.034)VEHS(0.966)PK 61.444 0.0029937 0 1635.4 1276 1139.4 1110.9 1048.6 1115.2 1234.8 984.33 1166.5 1217.4 TRUE FALSE FALSE 1443.700891 1315.312048 1200.99941 1156.207304 971.2468671 1093.929418 1282.42665 1096.382148 1118.416376 1210.158851 1.192984615 1.086892061 0.992431208 0.955417797 0.802577998 0.903955227 1.059717614 0.90598201 0.924189726 1 10.24098072 -6.560044667 2.572133008 1.093467671 0.925641736 0.254013094 0.090626764 0.211717846 2.83758523 0.015131215 0.022854351 2.75E-07 6.560044667 -0.167825935 TGGPAYGPSSDVSTAS(ph)ETESEKR ddPTM_HeLa_CUDC101_4h_R1 2 TGGPAYGPSSDVSTASETESEKR 23 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 TGGPAYGPSSDVS(0.001)T(0.006)AS(0.988)ET(0.004)ES(0.001)EKR;TGGPAYGPSSDVS(0.002)T(0.021)AS(0.875)ET(0.076)ES(0.026)EKR ; 132.28 7.74E-08 45649000 7915.1 5726.5 5593.2 4912 5180.7 5262.4 5132.7 4466.6 5343.5 6027.6 TRUE FALSE FALSE 6987.303977 5902.926677 5895.585311 5112.332591 4798.530082 5162.028488 5330.669958 4975.059689 5123.238668 5991.747567 1.166154598 0.98517613 0.983950883 0.853228968 0.800856516 0.861523025 0.889668648 0.83031864 0.855049151 1 12.54876113 -6.559718754 1.803984261 1.076483636 0.846662845 0.338589318 0.08549684 0.141072335 0.923790436 0.011433427 0.017949666 2.76E-07 6.559718754 -0.229820791 QS(ph)GDGQESTEPVENK ddPTM_HeLa_CUDC101_4h_R1 2 QSGDGQESTEPVENK 15 0 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 0 QS(0.998)GDGQES(0.001)T(0.001)EPVENK;QS(0.993)GDGQES(0.005)T(0.002)EPVENK ; 261.76 5.87E-70 18870000 5659.1 4939.67 4199.24 4020.74 4649.5 4443.2 4294.7 4260.6 4933.09 4328.59 TRUE FALSE FALSE 4995.748877 5091.855378 4426.263616 4184.723156 4306.515648 4358.453363 4460.348018 4745.609482 4729.745942 4302.843354 1.161034336 1.183369916 1.02868342 0.972548339 1.000853458 1.012924014 1.036604787 1.102900824 1.099214067 1 12.0710746 -6.559193318 24.99966989 1.087161466 1.02145528 0.319023563 0.056751779 251.6360881 173230.2425 0.011987386 0.016952758 2.76E-07 6.559193318 -0.065706186 EGDVLTLLES(ph)ER ddPTM_HeLa_CUDC101_4h_R1 1 EGDVLTLLESER 12 0 P62857 P62857 RPS28 40S ribosomal protein S28 1 0 EGDVLTLLES(1)ER 99.161 0.012322 1326300 703.93 828.99 518.08 471.86 603.88 504.46 500.74 524.91 595.15 720.75 TRUE FALSE FALSE 621.4163925 854.5301993 546.0889719 491.1044904 559.3329755 494.838266 520.0537095 584.6636326 570.6176651 716.4629469 0.867339191 1.192706759 0.762201275 0.685456928 0.780686535 0.690668328 0.725862673 0.816041688 0.796437091 1 9.484748285 -6.55834235 24.99486772 0.955836587 0.737051069 0.528376574 0.102166501 92.70611665 65339.25396 0.014372774 0.020326208 2.76E-07 6.55834235 -0.218785517 AAS(ph)PAKPSSLDLVPNLPK ddPTM_HeLa_CUDC101_4h_R1 2 AASPAKPSSLDLVPNLPK 18 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 AAS(0.999)PAKPS(0.001)SLDLVPNLPK;AAS(1)PAKPSSLDLVPNLPK ; 129.2 3.78E-05 1206900000 12691.1 11718.1 10218.8 9866.8 11475.7 10462.3 10342.9 10687 11902.9 11274.7 TRUE FALSE FALSE 11203.4685 12079.12077 10771.25924 10269.21075 10629.16047 10262.74906 10741.82912 11903.56488 11412.25742 11207.63758 0.999628014 1.077757974 0.961064199 0.916268989 0.948385455 0.915692445 0.9584383 1.062094022 1.018257179 1 13.45219459 -6.558150698 24.99994426 1.006319065 0.955124269 0.295363155 0.044602983 190.3817538 134937.5043 0.006857771 0.009698377 2.77E-07 6.558150698 -0.051194796 GPS(ph)PRPPATAYDAPASAFGSSLLGSGGSAFAPPLR ddPTM_HeLa_CUDC101_4h_R1 1 GPSPRPPATAYDAPASAFGSSLLGSGGSAFAPPLR 35 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 GPS(0.519)PRPPAT(0.317)AY(0.088)DAPAS(0.061)AFGS(0.008)S(0.003)LLGS(0.002)GGS(0.001)AFAPPLR 47.668 0.011219 20975000 847.85 519.01 514.68 590.88 479.21 371.7 502.05 423.18 460.51 644.42 TRUE FALSE FALSE 748.4663083 535.0000829 542.5051576 614.9786404 443.859633 364.6104418 521.4142367 471.3531006 441.5275829 640.5869612 1.168407029 0.835171671 0.846887605 0.960023662 0.692895204 0.569181803 0.813963237 0.735814385 0.689254714 1 9.323250623 -6.556798327 1.002603471 1.075757902 0.715505988 0.064670793 0.160782806 0.238382338 0.478727186 0.022249391 0.039152347 2.77E-07 6.556798327 -0.360251914 ASVLDTSMS(ph)AGSGSPSK ddPTM_HeLa_CUDC101_4h_R1 1 ASVLDTSMSAGSGSPSK 17 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 ASVLDT(0.007)S(0.029)MS(0.916)AGS(0.001)GS(0.045)PS(0.001)K 84.188 0.01984 107960000 6390.8 5637.2 5222.5 4526.1 5547.5 4878.5 4557.1 5309.8 6036.1 6169.5 TRUE FALSE FALSE 5641.680112 5810.87545 5504.844147 4710.693921 5138.271977 4785.450741 4732.868874 5914.246169 5787.289403 6132.80354 0.919918611 0.94750719 0.897606472 0.768114271 0.837834107 0.780303936 0.771730065 0.964362568 0.943661307 1 12.58233102 -6.554345113 2.996484935 0.960258631 0.819858822 0.531337976 0.056407899 0.142091272 2.615135042 0.009221287 0.013784141 2.79E-07 6.554345113 -0.140399809 LS(ph)SDSFAR ddPTM_HeLa_CUDC101_4h_R1 1 LSSDSFAR 8 0 A0A087WSV0;Q9HB09-3;Q9HB09 A0A087WSV0 BCL2L12 Bcl-2-like protein 12 1 0 LS(0.492)S(0.492)DS(0.017)FAR 154.85 0.0017919 16754000 3798.5 3179 2857.7 3374.8 3107.3 3141.3 2881 2936.1 3148.6 3366.8 TRUE FALSE FALSE 3353.245588 3276.941222 3012.195906 3512.438931 2878.08067 3081.384936 2992.121135 3270.333756 3018.813375 3346.774124 1.001933642 0.979134265 0.900029639 1.049499847 0.859956652 0.920702988 0.894031394 0.977159986 0.902006907 1 11.70855547 -6.55431492 0.808550501 1.002329503 0.920317291 0 0.058619132 0.496816845 0.65006205 0.009422084 0.01774647 2.79E-07 6.55431492 -0.082012212 ALS(ph)PLPTR ddPTM_HeLa_CUDC101_4h_R1 2 ALSPLPTR 8 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 ALS(0.999)PLPT(0.001)R;ALS(0.899)PLPT(0.101)R ; 104.42 0.014792 53931000 13598.1 8602.5 8762.8 8179.8 5235 4898 5789.7 11131.8 9272.9 10183.9 TRUE FALSE FALSE 12004.15133 8867.532829 9236.543474 8513.4076 4848.82448 4804.578811 6013.010668 12398.99912 8890.667137 10123.32571 1.185791278 0.87595056 0.912402084 0.840969445 0.478975449 0.474604784 0.593975818 1.22479504 0.878235808 1 13.3053957 -6.55348912 1.437812467 1.082662122 0.681748305 0.223309395 0.220357716 0.293770212 1.21790873 0.036807916 0.059965656 2.80E-07 6.55348912 -0.400913817 ISYIPDEEVSS(ph)PSPPQR ddPTM_HeLa_CUDC101_4h_R1 1 ISYIPDEEVSSPSPPQR 17 0 F8W930;Q9Y6M1-5;Q9Y6M1-6;Q9Y6M1-3;Q9Y6M1-4;Q9Y6M1-1;Q9Y6M1 F8W930 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 1 0 ISYIPDEEVS(0.204)S(0.789)PS(0.006)PPQR 249.86 4.73E-56 18094000 2731.5 2457 2008.5 1859.2 2223 2025 2029.1 2162.7 2470.6 2165.8 TRUE FALSE FALSE 2411.317711 2532.697258 2117.085585 1935.026212 2059.013719 1986.376499 2107.363067 2408.893026 2368.760822 2152.917725 1.120023159 1.176402251 0.983356475 0.898792457 0.95638291 0.922643943 0.978840502 1.118896927 1.100256082 1 11.07207747 -6.553021984 24.88209369 1.067842459 0.96833428 0.390395193 0.070715836 193.9784426 160121.0531 0.012454802 0.017613879 2.80E-07 6.553021984 -0.099508179 LGAGEGGEASVS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 5 LGAGEGGEASVSPEK 15 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LGAGEGGEAS(0.001)VS(0.999)PEK;LGAGEGGEAS(0.052)VS(0.948)PEK;LGAGEGGEAS(0.026)VS(0.974)PEK;LGAGEGGEAS(0.09)VS(0.91)PEK;LGAGEGGEAS(0.228)VS(0.772)PEK ;;;; 222.75 1.55E-32 2558760000 34351.12 27572.17 27078.8 25769.08 25228.2 27093.66 25431.67 23125.14 28819 30418.64 TRUE FALSE FALSE 30324.53379 28421.63588 28542.76184 26820.05447 23367.16595 26576.89358 26412.57803 25757.61246 27631.06862 30237.70858 1.002871422 0.939940135 0.943945926 0.886973773 0.772782299 0.878932129 0.873498002 0.851837447 0.913795057 1 14.8840612 -6.552989507 1.315958778 1.000891329 0.84809188 0.599620943 0.041829925 0.119884231 0.415834154 0.005464847 0.009050383 2.80E-07 6.552989507 -0.152799449 GAPSQDDESGGIEDS(ph)PDR ddPTM_HeLa_CUDC101_4h_R1 2 GAPSQDDESGGIEDSPDR 18 0 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 GAPSQDDESGGIEDS(1)PDR;GAPSQDDESGGIEDS(1)PDR ; 299.69 1.49E-123 34051000 1598.03 1439.06 1107.17 1100.81 962.48 1205.43 890.18 1138.67 1301.8 1278.09 TRUE FALSE FALSE 1410.711346 1483.395733 1167.026959 1145.70579 891.4797679 1182.438431 924.5145408 1268.29159 1248.139253 1270.487864 1.110369793 1.167579617 0.918566003 0.901784128 0.701683025 0.930696361 0.727684669 0.998271315 0.982409426 1 10.31116688 -6.549781464 4.169629004 1.06227893 0.845319619 0.519280876 0.096406358 0.118820041 4.711376311 0.014540344 0.02129173 2.82E-07 6.549781464 -0.216959311 VDGIPNDSS(ph)DSEMEDK ddPTM_HeLa_CUDC101_4h_R1 4 VDGIPNDSSDSEMEDK 16 0 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 VDGIPNDS(0.136)S(0.432)DS(0.432)EMEDK;VDGIPNDS(0.186)S(0.537)DS(0.276)EMEDK;VDGIPNDS(0.083)S(0.916)DS(0.001)EMEDK;VDGIPNDS(0.173)S(0.653)DS(0.173)EMEDK ;;; 203.56 7.28E-17 58285900 15525.1 11192 10087.3 10822.8 9923.1 11442.9 9337 7175.9 10578.7 12271.9 TRUE FALSE FALSE 13705.27131 11536.81225 10632.64995 11264.20056 9191.092683 11224.64575 9697.131218 7992.77545 10142.64151 12198.90619 1.123483622 0.945725139 0.87160683 0.923377915 0.753435803 0.920135426 0.794918091 0.655204272 0.831438602 1 13.57446417 -6.549156564 1.097664446 1.057531691 0.792978939 0.302389259 0.104880006 0.214232005 0.515851967 0.015361828 0.026523823 2.82E-07 6.549156564 -0.264552752 SPRPGSSAPEHS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SPRPGSSAPEHSPR 14 1 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 SPRPGSSAPEHS(1)PR;SPRPGSSAPEHS(1)PR ; 76.341 0.018803 2047350 346.69 131.34 364.39 426.74 607.89 243.511 411.52 264.63 570.41 374.92 TRUE FALSE FALSE 306.0515237 135.3864297 384.0900256 444.1443017 563.0471658 238.8664334 427.3924642 294.7544095 546.8974584 372.6899592 0.821196054 0.363268251 1.030588606 1.191725966 1.510765589 0.640925326 1.146777512 0.790883688 1.467432768 1 8.541832141 -6.548789076 24.99572452 0.863456958 1.068201225 0.031667662 0.333492283 379.4517181 366056.0496 0.043463966 0.061468367 2.83E-07 6.548789076 0.204744267 AS(ph)PGLLPVANGNSLNK ddPTM_HeLa_CUDC101_4h_R1 2 ASPGLLPVANGNSLNK 16 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 AS(1)PGLLPVANGNSLNK;AS(1)PGLLPVANGNSLNK ; 171.71 6.36E-07 172564000 5944.9 5125.4 4053.5 4041.8 4688.8 3971 4024.3 3653.8 4706 4253.3 TRUE FALSE FALSE 5248.047834 5283.307499 4272.644471 4206.642074 4342.916565 3895.259791 4179.518599 4069.733823 4512.016688 4228.001182 1.241259784 1.249599343 1.010558958 0.994948178 1.0271796 0.921300544 0.988532978 0.96256686 1.067174888 1 12.04576006 -6.548498852 23.476418 1.127419886 0.981305221 0.51817847 0.073516764 100.7504714 92319.88523 0.016205371 0.022918558 2.83E-07 6.548498852 -0.146114666 STGGAPTFNVTVT(ph)KTDK ddPTM_HeLa_CUDC101_4h_R1 1 STGGAPTFNVTVTKTDK 17 1 P07737;K7EJ44 P07737 PFN1 Profilin-1 1 0 STGGAPT(0.002)FNVT(0.016)VT(0.91)KT(0.072)DK 70.897 0.028497 50298000 1373.8 1211.7 1326.1 1395.2 1547.8 1467.3 1177.6 1376.8 1222.1 1504.9 TRUE FALSE FALSE 1212.765247 1249.031041 1397.792977 1452.102287 1433.621878 1439.313697 1223.020426 1533.529347 1171.724521 1495.948788 0.810699709 0.83494238 0.934385581 0.970689838 0.958336201 0.962141023 0.81755501 1.025121554 0.783265129 1 10.54684507 -6.547845053 24.87650384 0.901589283 0.942231965 0.148594002 0.07763285 581.9878723 579891.8522 0.013755275 0.019453222 2.83E-07 6.547845053 0.040642682 ALS(ph)PGLEESGLGLLAR ddPTM_HeLa_CUDC101_4h_R1 4 ALSPGLEESGLGLLAR 16 0 H9KVB4;O15417-2;O15417 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR ;;; 270.74 1.10E-85 73894900 3660.79 3621.2 2835.31 2578.83 3321.65 3184.71 2904.08 2393.64 3623.2 3168.59 TRUE FALSE FALSE 3231.677746 3732.76488 2988.595435 2684.005834 3076.618497 3123.966963 3016.091338 2666.122302 3473.850162 3149.743086 1.026013125 1.185101381 0.948837843 0.852134844 0.976783951 0.991816436 0.957567413 0.84645707 1.102899528 1 11.62101844 -6.5477854 24.99996281 1.02755904 0.930070907 0.460838843 0.07146583 200.6738461 201424.8464 0.010736116 0.01518348 2.83E-07 6.5477854 -0.097488134 IDFTPVS(ph)PAPS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 IDFTPVSPAPSPTR 14 0 G1UD79;Q7Z309-3;Q7Z309-4;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 2 0 IDFT(0.006)PVS(0.994)PAPS(0.606)PT(0.394)R 134.02 0.0068381 17664000 3558.6 3293.7 2822 2544.9 3217.3 3079.1 2934.2 2654 3080.8 3143.6 TRUE FALSE FALSE 3141.466302 3395.174993 2974.565856 2648.692022 2979.966189 3020.371298 3047.373077 2956.120632 2953.80812 3124.901727 1.005300831 1.086490165 0.951891008 0.847608102 0.953619169 0.966549211 0.975190052 0.945988351 0.945248324 1 11.6095951 -6.547683689 24.97132907 1.009363502 0.938086092 0.358193102 0.045651178 165.3329127 166441.3168 0.006532029 0.009237876 2.83E-07 6.547683689 -0.07127741 SGLCS(ph)PSYVAVTPFSLR ddPTM_HeLa_CUDC101_4h_R1 1 SGLCSPSYVAVTPFSLR 17 0 H0YBG3;A0A0B4J1R1;H0YBT0;A0A087WUS5;P01106;P01106-2 H0YBG3 MYC Myc proto-oncogene protein 1 0 S(0.047)GLCS(0.719)PS(0.232)Y(0.001)VAVT(0.001)PFSLR 107.63 0.0012977 13381000 1232.4 1141.6 754.1 682.65 806.25 765.68 792.13 609.51 1162.2 831.36 TRUE FALSE FALSE 1087.93994 1176.771343 794.868927 710.4914177 746.7745438 751.0759297 822.6827194 678.8941547 1114.293624 826.4150337 1.316457102 1.423947163 0.961827768 0.859727121 0.903631364 0.908836237 0.995483729 0.821492987 1.348346265 1 9.690722689 -6.546091181 24.69417723 1.175091582 0.904850991 0.639028325 0.126413584 143.1717526 152310.3364 0.023733892 0.033565943 2.84E-07 6.546091181 -0.270240591 ILEGDNGMDS(ph)DMEEEADDGSK ddPTM_HeLa_CUDC101_4h_R1 5 ILEGDNGMDSDMEEEADDGSK 21 0 Q9H8G2;A0A3B3ISJ3;Q9H8G2-2 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 0 ILEGDNGMDS(1)DMEEEADDGSK;ILEGDNGMDS(1)DMEEEADDGSK;ILEGDNGMDS(1)DMEEEADDGSK;ILEGDNGMDS(1)DMEEEADDGSK;ILEGDNGMDS(1)DMEEEADDGSK ;;;; 181.11 2.95E-13 70986000 25512.5 21811.8 20802.5 20191.3 23868.3 22096.7 20598.5 21185.4 23614 21812.8 TRUE FALSE FALSE 22521.96342 22483.7957 21927.14607 21014.78849 22107.58306 21675.24226 21392.99105 23597.0603 22640.62093 21683.0565 1.038689515 1.036929259 1.011257157 0.969180175 1.019578723 0.999639616 0.986622483 1.088271864 1.044161875 1 14.40428052 -6.545969093 24.70273855 1.020366321 1.008807831 0.028395772 0.031887658 688.0291833 736071.0747 0.004929375 0.006971923 2.84E-07 6.545969093 -0.01155849 QQLSPS(ph)PGQEAGILPETEK ddPTM_HeLa_CUDC101_4h_R1 1 QQLSPSPGQEAGILPETEK 19 0 E5RJM0;B7ZLQ8;Q17RY0-2;Q17RY0 E5RJM0 CPEB4 Cytoplasmic polyadenylation element-binding protein 4 1 0 QQLS(0.432)PS(0.568)PGQEAGILPETEK 140.96 5.38E-05 13776000 3178.2 2396.6 2835.8 2890.2 3389.1 2985.1 2908.7 2787.7 3039.9 2921 TRUE FALSE FALSE 2805.656214 2470.436405 2989.111926 3008.074849 3139.092845 2928.164191 3020.889533 3105.0405 2914.594035 2903.625762 0.966259582 0.850810885 1.029441178 1.035971952 1.081094157 1.008450961 1.040385291 1.069366631 1.00377744 1 11.50363981 -6.545493597 24.99999222 0.972032314 1.045057574 0.476606689 0.044555462 184.8265204 204319.0078 0.00714952 0.010111266 2.85E-07 6.545493597 0.07302526 PAVEASTGGEATQET(ph)GKEEAGKEEPPPLTPPAR ddPTM_HeLa_CUDC101_4h_R1 1 PAVEASTGGEATQETGKEEAGKEEPPPLTPPAR 33 2 Q9C0C2;E9PKK0;E9PKE7 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 PAVEAS(0.028)T(0.034)GGEAT(0.029)QET(0.772)GKEEAGKEEPPPLT(0.138)PPAR 49.525 0.015923 46443000 870.95 968.13 1101.3 1170.7 1466.6 1377.3 1339.8 1211.8 1108.1 959.76 TRUE FALSE FALSE 768.8585613 997.9569378 1160.839609 1218.446206 1358.41184 1351.030297 1391.476535 1349.746414 1062.423649 954.0513048 0.805888066 1.046020201 1.216747573 1.277128599 1.42383521 1.41609816 1.458492355 1.414752442 1.113591736 1 9.89792304 -6.545194226 1.387562419 0.908343829 1.423352425 0.827380581 0.087100206 0.091133474 0.351457264 0.014368069 0.023650234 2.85E-07 6.545194226 0.515008596 APSEEDSLSSVPIS(ph)PYKDEPWK ddPTM_HeLa_CUDC101_4h_R1 1 APSEEDSLSSVPISPYKDEPWK 22 1 A0A0G2JIC6;Q9Y676 A0A0G2JIC6 MRPS18B "28S ribosomal protein S18b, mitochondrial" 1 0 APS(0.001)EEDS(0.002)LS(0.049)S(0.043)VPIS(0.871)PY(0.035)KDEPWK 82.486 0.00047865 8149100 1293.7 1052.4 835.16 856.01 801.28 1005.4 712.19 905.7 1075.3 688.41 TRUE FALSE FALSE 1142.054447 1084.823197 880.3112758 890.9217878 742.1711708 986.2236701 739.6594069 1008.801227 1030.975679 684.3153067 1.668900923 1.585268057 1.286411786 1.301917083 1.084545623 1.441183122 1.080875146 1.474176037 1.506579889 1 9.418517408 -6.543429075 24.98075618 1.349230946 1.267151082 0.061977421 0.211428946 1048.908561 1275037.206 0.044878811 0.063471805 2.86E-07 6.543429075 -0.082079864 TLTRT(ph)SQETADVK ddPTM_HeLa_CUDC101_4h_R1 1 TLTRTSQETADVK 13 1 H3BVG0;Q8N1F7;H3BNN5;H3BV11;H3BRI8;H3BM93 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 0 T(0.012)LT(0.09)RT(0.447)S(0.447)QET(0.004)ADVK 139.21 6.47E-05 0 2308.2 2023.1 2314.8 2537.3 3390.7 2723.6 2761.4 2373.6 2246.6 1951.2 TRUE FALSE FALSE 2037.636295 2085.429313 2439.94509 2640.782061 3140.574816 2671.651868 2867.908123 2643.80103 2153.994197 1939.594176 1.050547749 1.07518848 1.257966806 1.361512678 1.619191713 1.377428279 1.478612464 1.363069173 1.110538598 1 10.92153911 -6.542354367 1.647195397 1.023097483 1.455924319 0.853290535 0.074529097 0.076707619 0.41743502 0.011115483 0.017806163 2.87E-07 6.542354367 0.432826836 NGS(ph)PTPAGSLGGGAVATAGGPGSR ddPTM_HeLa_CUDC101_4h_R1 3 NGSPTPAGSLGGGAVATAGGPGSR 24 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 NGS(0.565)PT(0.422)PAGS(0.013)LGGGAVATAGGPGSR;NGS(0.908)PT(0.069)PAGS(0.024)LGGGAVATAGGPGSR;NGS(0.963)PT(0.037)PAGSLGGGAVATAGGPGSR ;; 229.89 7.68E-62 128643000 6918.71 7379.61 5763.07 5620.34 6503.08 5970.64 5449.08 5841.77 7068.61 6546.7 TRUE FALSE FALSE 6107.709302 7606.967037 6074.638997 5849.561758 6023.360744 5856.75999 5659.252841 6506.773484 6777.238904 6507.759937 0.938527137 1.168907137 0.933445464 0.898859487 0.925565909 0.899965587 0.869616104 0.999848419 1.041408867 1 12.66794532 -6.542194848 24.99957173 0.988156237 0.915450888 0.322159888 0.069246809 287.4160027 371982.5095 0.010718751 0.0151599 2.87E-07 6.542194848 -0.072705349 S(ph)GDEMIFDPTMSK ddPTM_HeLa_CUDC101_4h_R1 3 SGDEMIFDPTMSK 13 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK ;; 184.76 5.91E-11 31105000 10307.8 9094.9 8399.5 8133.6 8400.9 8521.8 8978.8 8447.5 9466.8 9198.2 TRUE FALSE FALSE 9099.53531 9375.103089 8853.602377 8465.323364 7781.182344 8359.260863 9325.115324 9409.129254 9076.574497 9143.488697 0.99519293 1.025331074 0.968295874 0.92583079 0.851008034 0.914231005 1.01986404 1.029052429 0.992681765 1 13.15852902 -6.541825873 6.711509118 0.999685679 0.944883991 0.221725216 0.048529921 0.198895773 36.54530056 0.008187675 0.011761116 2.87E-07 6.541825873 -0.054801688 EAARS(ph)PDKPGGSPSASR ddPTM_HeLa_CUDC101_4h_R1 1 EAARSPDKPGGSPSASR 17 2 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 EAARS(1)PDKPGGSPSASR 94.339 0.0041887 264240000 3203.6 2985.1 2519 2351.9 2871.5 2639.5 2320 2707.4 2096.1 2731.8 TRUE FALSE FALSE 2828.078864 3077.067393 2655.18476 2447.820648 2659.675166 2589.155935 2409.483177 3015.599472 2009.697871 2715.551132 1.041438267 1.133128136 0.977770121 0.901408417 0.97942371 0.953455048 0.887290668 1.110492613 0.74006998 1 11.40702931 -6.541372057 24.98513396 1.029908846 0.959777942 0 0.112911696 275.871982 372711.8889 0.009943956 0.014064106 2.87E-07 6.541372057 -0.070130903 T(ph)GSPGPELLFHEGQQKR ddPTM_HeLa_CUDC101_4h_R1 1 TGSPGPELLFHEGQQKR 17 1 A6NHN7;A6NHB5;A6NL54;Q14202-2;Q14202;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 0 T(0.785)GS(0.215)PGPELLFHEGQQKR 82.755 0.008561 8418700 3575.1 4328 3919.5 4097 6589.7 5344.1 4715.7 4898.3 4663.5 3399.8 TRUE FALSE FALSE 3156.032197 4461.34055 4131.400026 4264.093369 6103.59096 5242.170196 4897.586129 5455.902672 4471.268556 3379.577838 0.933853975 1.320088119 1.222460385 1.261723675 1.806021714 1.551131664 1.44917098 1.614374023 1.323025765 1 11.72262733 -6.540952572 0.966275756 0.967618792 1.583993765 0.531436491 0.174446334 0.163525758 0.304939085 0.025483188 0.045762604 2.88E-07 6.540952572 0.616374973 AKTPT(ph)PEPFDSETR ddPTM_HeLa_CUDC101_4h_R1 1 AKTPTPEPFDSETR 14 1 Q9NSY0;H0YCB1;Q9NSY0-2;Q9NSY0-4 Q9NSY0 NRBP2 Nuclear receptor-binding protein 2 1 0 AKT(0.202)PT(0.798)PEPFDSETR 117.4 0.030448 6058200 1479 1300.9 1102.3 924 1176.6 1154.3 1101.9 852.43 1319.7 1246.2 TRUE FALSE FALSE 1305.633862 1340.979187 1161.893672 961.6847139 1089.804562 1132.283651 1144.400652 949.4671856 1265.301407 1238.787547 1.053961081 1.082493274 0.937928118 0.776311254 0.879734838 0.914025697 0.923807036 0.766448765 1.021403073 1 10.27471307 -6.540228184 5.838767519 1.029980119 0.860359553 0.737310247 0.052472037 0.068845826 7.958068102 0.008385071 0.012123343 2.88E-07 6.540228184 -0.169620566 RAPS(ph)WR ddPTM_HeLa_CUDC101_4h_R1 1 RAPSWR 6 1 A0A2R8Y7R9;Q13136-2;Q13136;M0QZB5;B1APN9;O75335-2;O75335-1;O75335 A0A2R8Y7R9 PPFIA1;PPFIA4 Liprin-alpha-1;Liprin-alpha-4 1 0 RAPS(1)WR 67.494 0.035486 126840000 2560.3 2005.5 2208.5 2531.6 2511.9 2650 2267.8 2097.5 2308 2114.7 TRUE FALSE FALSE 2260.185515 2067.287078 2327.89819 2634.849591 2326.602141 2599.455665 2355.269806 2336.270922 2212.863263 2102.12167 1.075192529 0.983428841 1.107404116 1.253423923 1.106787573 1.236586684 1.120425063 1.111387107 1.052680867 1 11.03763046 -6.53965142 7.431966792 1.033033756 1.165564636 0.610274745 0.051879875 0.080858726 22.11619675 0.008155142 0.011691589 2.89E-07 6.53965142 0.13253088 LPLVPES(ph)PRR ddPTM_HeLa_CUDC101_4h_R1 1 LPLVPESPRR 10 1 C9J0I9;Q86WB0;Q86WB0-2;Q86WB0-3 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LPLVPES(1)PRR 145.81 0.00040977 133550000 6421.7 5817.7 5241.4 5093.7 4995.7 5609.5 5048.1 6271.8 4969.3 5678.8 TRUE FALSE FALSE 5668.958061 5996.936441 5524.765938 5301.443103 4627.177164 5502.508134 5242.806908 6985.756361 4764.463351 5645.022245 1.004240163 1.062340622 0.97869693 0.93913591 0.819691573 0.974754021 0.928748671 1.237507322 0.844011439 1 12.46276355 -6.538580467 24.74396525 1.0072472 0.967026969 0 0.112655648 648.5889061 1022092.168 0.015112708 0.021376661 2.89E-07 6.538580467 -0.040220231 KAPAGPSLEETSVS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 2 KAPAGPSLEETSVSSPK 17 1 A0A087WXZ7;K7EIX2;Q6AI08 A0A087WXZ7 HEATR6 HEAT repeat-containing protein 6 1 0 KAPAGPSLEETS(0.004)VS(0.679)S(0.317)PK;KAPAGPSLEETS(0.001)VS(0.611)S(0.387)PK ; 118.37 0.00017011 184200000 13319.2 10380.6 11129.8 12097.3 12238.8 11924.5 11776 10502.6 10680.3 11076.3 TRUE FALSE FALSE 11757.94357 10700.41398 11731.51065 12590.68018 11335.96811 11697.06003 12230.20426 11698.17353 10240.05351 11010.41767 1.067892601 0.971844511 1.065491882 1.143524302 1.029567492 1.062362971 1.11078477 1.062464102 0.930033157 1 13.42658158 -6.537279646 24.95488031 1.027974681 1.081892121 0.361527628 0.048217398 219.0198895 379531.3586 0.006272475 0.008873013 2.90E-07 6.537279646 0.053917441 GPS(ph)PSPVGSPASVAQSR ddPTM_HeLa_CUDC101_4h_R1 2 GPSPSPVGSPASVAQSR 17 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 GPS(0.966)PS(0.034)PVGSPASVAQSR;GPS(0.972)PS(0.028)PVGSPASVAQSR ; 278.88 1.31E-86 307710000 2458.4 2429.55 1988.3 1765.48 1935.83 2013.6 2065.22 2146.4 2468.6 2365.42 TRUE FALSE FALSE 2170.230079 2504.401556 2095.793512 1837.483905 1793.027678 1975.193935 2144.876227 2390.7375 2366.843263 2351.350377 0.922971795 1.065090758 0.891314852 0.781458996 0.762552317 0.840025355 0.912189118 1.016750852 1.006588931 1 11.19927382 -6.537260829 24.69907782 0.970599304 0.856323522 0.404928011 0.075417457 182.5572361 313513.6045 0.012492784 0.017671912 2.90E-07 6.537260829 -0.114275781 SST(ph)PPGESYFGVSSLQLK ddPTM_HeLa_CUDC101_4h_R1 2 SSTPPGESYFGVSSLQLK 18 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.109)S(0.109)T(0.783)PPGESYFGVSSLQLK;S(0.026)S(0.026)T(0.948)PPGESYFGVSSLQLK ; 149.57 0.00031987 1983650000 7674.9 7180 6347.6 5844.2 7258.7 6861.6 6231.3 6091.1 7143.8 7191.9 TRUE FALSE FALSE 6775.259856 7401.20729 6690.770456 6082.551737 6723.240162 6730.726412 6471.643328 6784.486203 6849.32954 7149.122259 0.947705132 1.035260976 0.935886982 0.850810983 0.940428757 0.941475914 0.905236069 0.948995689 0.958065801 1 12.80355041 -6.5372518 24.80855051 0.979419608 0.916734044 0.466320758 0.034199519 154.5696103 266793.4164 0.005514816 0.007801035 2.90E-07 6.5372518 -0.062685564 WKGYTSDDDT(ph)WEPEIHLEDCK ddPTM_HeLa_CUDC101_4h_R1 1 WKGYTSDDDTWEPEIHLEDCK 21 1 Q99549-2;Q99549 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 WKGY(0.106)T(0.118)S(0.118)DDDT(0.658)WEPEIHLEDCK 52.298 0.025034 14928000 1045.7 1349 987.67 928.7 925.9 1034.2 1081.5 915.07 888.62 1306.4 TRUE FALSE FALSE 923.1246312 1390.561091 1041.066428 966.5764002 857.5982017 1014.474358 1123.213817 1019.23787 851.9907075 1298.629475 0.710845279 1.07079126 0.801665485 0.744304992 0.660387138 0.781188459 0.864922473 0.784856566 0.656069128 1 10.34277414 -6.537110132 24.99492327 0.878096318 0.767972336 0.104070201 0.122985618 354.6976822 622962.078 0.020368011 0.028811631 2.90E-07 6.537110132 -0.110123982 TGRDT(ph)PENGETAIGAENSEK ddPTM_HeLa_CUDC101_4h_R1 2 TGRDTPENGETAIGAENSEK 20 1 Q8N3X1;Q8N3X1-2 Q8N3X1 FNBP4 Formin-binding protein 4 1 0 T(0.028)GRDT(0.972)PENGETAIGAENSEK;T(0.412)GRDT(0.588)PENGETAIGAENSEK ; 158.91 9.99E-06 229560000 13511.9 9759.4 8817.9 9603 8432.7 7324.3 7245.2 6283.8 12013.7 13131.2 TRUE FALSE FALSE 11928.05556 10060.07555 9294.622347 9994.651848 7810.636521 7184.601181 7524.649791 6999.122392 11518.4902 13053.09504 0.91381052 0.770704229 0.712062719 0.765692107 0.598374293 0.550413611 0.576464798 0.536204048 0.882433643 1 13.67210431 -6.536701971 0.487055532 0.995260528 0.509909784 0.893426525 0.050981251 0.142124759 0.069814618 0.012450802 0.028028124 2.91E-07 6.536701971 -0.485350744 SQS(ph)FSHQQPSR ddPTM_HeLa_CUDC101_4h_R1 1 SQSFSHQQPSR 11 0 B3KNS5;Q8WVR3-2;Q8WVR3-3;Q8WVR3 B3KNS5 C7orf43 Uncharacterized protein C7orf43 1 0 S(0.301)QS(0.672)FS(0.027)HQQPSR 77.24 0.029004 13048000 2781.5 1795.7 2253.4 2443.8 2647 2333.6 2466.7 2112.8 2276.4 2103.2 TRUE FALSE FALSE 2455.456786 1851.023389 2375.22562 2543.468727 2451.736084 2289.090468 2561.841445 2353.312612 2182.565828 2090.690073 1.174471921 0.885364795 1.136096474 1.216568998 1.172692268 1.094897086 1.225356871 1.125615242 1.043945182 1 11.0297635 -6.536525829 24.99908609 1.067096439 1.167550185 0.380725491 0.078994751 269.0080254 492774.2817 0.014164527 0.020037106 2.91E-07 6.536525829 0.100453746 ESAAPAAAPTAEAPPPSVVT(ph)RPEPQALPSPAIR ddPTM_HeLa_CUDC101_4h_R1 1 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR 33 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 0 ESAAPAAAPT(0.044)AEAPPPS(0.316)VVT(0.363)RPEPQALPS(0.276)PAIR 60.176 0.0009613 5609500 919.42 1123 706.51 498.72 873.47 747.33 643.11 614.21 770.91 863.32 TRUE FALSE FALSE 811.6469814 1157.598299 744.7060677 519.0599573 809.0358583 733.0759254 667.9149681 684.1291837 739.1327635 858.1849342 0.94577165 1.348891425 0.86776875 0.604834618 0.942729039 0.854216727 0.778287921 0.797181536 0.861274457 1 9.745144764 -6.535106836 24.99998966 1.006838666 0.798979284 0.387180026 0.142759819 187.308729 382946.2992 0.021045837 0.029774626 2.92E-07 6.535106836 -0.207859381 T(ph)DYNASVSVPDSSGPER ddPTM_HeLa_CUDC101_4h_R1 1 TDYNASVSVPDSSGPER 17 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 T(0.543)DYNAS(0.448)VS(0.008)VPDSSGPER 230.45 2.06E-33 6864500 1135.9 1062.1 876.7 827.15 1050.1 868.01 749.57 873.6 913.99 987.78 TRUE FALSE FALSE 1002.751524 1094.822042 924.0970539 860.8847522 972.6362151 851.4541555 778.481166 973.0470928 876.3149453 981.9046406 1.021231067 1.114998338 0.941127087 0.876749856 0.990560768 0.867145464 0.792827668 0.990979218 0.89246441 1 9.939439111 -6.534435946 24.89531465 1.018649525 0.901159982 0.297359589 0.074235419 139.9189493 301397.832 0.009501039 0.013442853 2.92E-07 6.534435946 -0.117489544 STSTLEIQPSRAS(ph)PTSDIESVER ddPTM_HeLa_CUDC101_4h_R1 2 STSTLEIQPSRASPTSDIESVER 23 1 Q96JK2-2;Q96JK2-3;Q96JK2 Q96JK2-2 DCAF5 DDB1- and CUL4-associated factor 5 1 0 S(0.001)T(0.001)S(0.001)T(0.002)LEIQPS(0.125)RAS(0.686)PT(0.125)S(0.055)DIES(0.004)VER;STSTLEIQPS(0.087)RAS(0.782)PT(0.124)S(0.006)DIES(0.001)VER ; 62.823 0.0043591 19478600 3504.8 2880.2 2636.8 2336.7 2700.1 2610.1 2301.1 2249.7 2819.1 3004.7 TRUE FALSE FALSE 3093.972657 2968.935548 2779.353384 2432.000726 2500.919002 2560.316691 2389.854198 2505.796754 2702.895505 2986.827911 1.03587242 0.994009577 0.930536833 0.814241998 0.837316068 0.857202614 0.800131199 0.838949156 0.904938478 1 11.5443984 -6.534396317 2.261243953 1.016612184 0.829234585 0.757648073 0.039706647 0.04456235 0.45774566 0.003298681 0.005092499 2.92E-07 6.534396317 -0.187377599 TLTRTS(ph)QETADVK ddPTM_HeLa_CUDC101_4h_R1 2 TLTRTSQETADVK 13 1 H3BVG0;Q8N1F7;H3BNN5;H3BV11;H3BRI8;H3BM93 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 0 TLT(0.001)RT(0.45)S(0.537)QET(0.011)ADVK;TLTRT(0.003)S(0.977)QET(0.02)ADVK ; 192.4 3.11E-11 75058000 4999.4 4960.1 5358.9 5372.5 8114.3 6225.8 5908.4 5835.1 5378.4 4767.8 TRUE FALSE FALSE 4413.377911 5112.914802 5648.618344 5591.613772 7515.724255 6107.053238 6136.288967 6499.344198 5156.700076 4739.440914 0.931202222 1.078801254 1.191832211 1.179804512 1.585782879 1.288559843 1.294728446 1.371331412 1.088039743 1 12.21050117 -6.533793642 1.372757527 0.968071759 1.363992946 0.697108767 0.100722598 0.132065991 0.497958713 0.015872494 0.026324631 2.93E-07 6.533793642 0.395921187 S(ph)FEVEEVETPNSTPPRR ddPTM_HeLa_CUDC101_4h_R1 1 SFEVEEVETPNSTPPRR 17 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 S(1)FEVEEVETPNSTPPRR 159.44 2.56E-05 79780000 785.23 1022.8 672.29 878.59 1156.3 1137.3 1227.3 872.47 1188.1 583.63 TRUE FALSE FALSE 693.1865297 1054.311256 708.636031 914.4226978 1071.002053 1115.607897 1274.637372 971.7884582 1139.126015 580.1585428 1.194822585 1.817281274 1.221452377 1.576160015 1.846050646 1.922936258 2.197050079 1.67503947 1.963473656 1 9.180303396 -6.533354431 0.44024071 1.003145444 2.0610264 0.012812615 0.36602433 0.409031052 0.166778366 0.075500269 0.173255233 2.93E-07 6.533354431 1.057880955 AHGS(ph)FSHVR ddPTM_HeLa_CUDC101_4h_R1 2 AHGSFSHVR 9 0 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 AHGS(0.998)FS(0.002)HVR;AHGS(0.974)FS(0.026)HVR ; 133.91 0.0017189 20134100 1645.36 848.09 1454.33 1739.3 1470.47 1618.78 1922.22 1070.85 1310.95 1458.35 TRUE FALSE FALSE 1452.493395 874.2186477 1532.955479 1810.236172 1361.996358 1587.904469 1996.360669 1192.751235 1256.912086 1449.675669 1.001943694 0.603044299 1.057447201 1.248718048 0.939517981 1.095351534 1.377108488 0.822771093 0.867029856 1 10.50151445 -6.533331592 24.99874166 0.964395516 1.108427283 0.191833487 0.185715964 335.9442314 803432.6747 0.027636326 0.039105977 2.93E-07 6.533331592 0.144031767 S(ph)IDDLEEK ddPTM_HeLa_CUDC101_4h_R1 2 SIDDLEEK 8 0 P09493-3;P09493-9;Q6ZN40;P09493-8;P09493-7;P09493-2;H7BYY1 P09493-3 TPM1 Tropomyosin alpha-1 chain 1 0 S(1)IDDLEEK;S(1)IDDLEEK ; 145.99 0.0036802 49746000 8020.9 7199 6134.9 5830.9 7019.6 6812.7 6400.1 5221.5 7866.2 6084.9 TRUE FALSE FALSE 7080.702261 7420.792657 6466.571251 6068.709305 6501.778093 6682.759098 6646.954001 5815.894454 7541.951907 6048.706744 1.170614242 1.226839549 1.069083281 1.003306915 1.074903838 1.104824449 1.098904986 0.961510402 1.246870153 1 12.562411 -6.533275914 24.9480423 1.096368986 1.054068742 0.144815929 0.084045732 558.4258787 1339941.56 0.013933421 0.019718667 2.93E-07 6.533275914 -0.042300245 FADEHVPGS(ph)PFTVK ddPTM_HeLa_CUDC101_4h_R1 1 FADEHVPGSPFTVK 14 0 O75369-8;O75369-2;O75369-9;O75369;E7EN95;O75369-7;O75369-5;O75369-4;A0A0C4DGA1 O75369-8 FLNB Filamin-B 1 0 FADEHVPGS(0.752)PFT(0.248)VK 72.932 0.025923 4262900 3857.1 3650.2 3335.4 3330.3 4205.3 3672.2 3267.4 1606.5 4022.4 3789.9 TRUE FALSE FALSE 3404.976585 3762.658335 3515.721813 3466.124029 3895.083397 3602.158903 3393.424713 1789.377466 3856.594969 3767.357506 0.903810318 0.998752661 0.933206314 0.920041176 1.03390331 0.956150006 0.900744011 0.474968851 1.023687018 1 11.87933723 -4.253561923 3.287397848 0.958207668 0.403708044 0.9216933 0.043006497 0.067818095 1.157492421 0.006157067 0.095972767 5.58E-05 4.253561923 -0.554499624 down ES(ph)SPIPSPTSDRK ddPTM_HeLa_CUDC101_4h_R1 1 ESSPIPSPTSDRK 13 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 ES(0.572)S(0.428)PIPS(0.001)PTSDRK 88.706 0.010537 37306000 1620.1 1583.1 1655 1851.8 1808.4 1983.6 1623.7 1980.6 2038.1 1831.7 TRUE FALSE FALSE 1430.194334 1631.873435 1744.474306 1927.324408 1674.997935 1945.766135 1686.326653 2206.063498 1954.088655 1820.804967 0.785473656 0.896237359 0.958078618 1.058501291 0.919921664 1.068629628 0.926143482 1.211586929 1.07320042 1 10.83036068 -6.532282561 3.326574771 0.895891897 1.025857042 0.112966984 0.106400175 0.263086259 6.105791859 0.016674318 0.024954224 2.94E-07 6.532282561 0.129965145 KALVVPEPEPDSDS(ph)NQER ddPTM_HeLa_CUDC101_4h_R1 2 KALVVPEPEPDSDSNQER 18 1 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 KALVVPEPEPDS(0.028)DS(0.972)NQER;KALVVPEPEPDS(0.005)DS(0.995)NQER ; 220.74 3.25E-33 63081000 3570.49 3613.05 3438.97 3672.22 5000.83 4311.01 4059.89 4148.41 3046.84 3013.42 TRUE FALSE FALSE 3151.962575 3724.363788 3624.891121 3821.989004 4631.928734 4228.784667 4216.481317 4620.648226 2921.247966 2995.496044 1.05223393 1.243321217 1.210113807 1.275911885 1.54629773 1.411714322 1.407607039 1.542531907 0.975213428 1 11.54857921 -6.531560035 0.694253799 1.008807877 1.491325634 0.891266369 0.066037228 0.139597474 0.135113772 0.014237392 0.028809732 2.94E-07 6.531560035 0.482517757 S(ph)VSSSSYR ddPTM_HeLa_CUDC101_4h_R1 2 SVSSSSYR 8 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 S(0.999)VS(0.001)SSSYR;S(1)VSSSSYR ; 117.53 0.0081379 213110000 1863.81 1232.26 1624.79 2026.4 1904.16 1730.98 1699.9 1505.96 1358.14 1560.78 TRUE FALSE FALSE 1645.337017 1270.22447 1712.631062 2109.045351 1763.69391 1697.964441 1765.465712 1677.392399 1302.156894 1551.496411 1.060483934 0.818709254 1.103857572 1.359362056 1.136769571 1.094404362 1.137911567 1.081144879 0.839290948 1 10.59944464 -6.530677803 24.99209531 1.011128698 1.163054133 0.441497863 0.109724649 149.8261004 480116.3801 0.015073596 0.021339027 2.95E-07 6.530677803 0.151925436 KDLGSTEDGDGT(ph)DDFLTDKEDEK ddPTM_HeLa_CUDC101_4h_R1 1 KDLGSTEDGDGTDDFLTDKEDEK 23 2 Q15527 Q15527 SURF2 Surfeit locus protein 2 1 0 KDLGS(0.001)T(0.002)EDGDGT(0.995)DDFLT(0.002)DKEDEK 62.648 0.0069647 71835000 1176.9 1322.3 1037.4 848.66 1058.9 1065.7 1163.4 807.65 1071.6 1369.1 TRUE FALSE FALSE 1038.945566 1363.038496 1093.484982 883.272023 980.7870566 1045.373548 1208.272728 899.5896114 1027.428194 1360.956532 0.763393644 1.001529779 0.80346797 0.649008254 0.72066009 0.768116779 0.887811403 0.660998048 0.75493094 1 10.41040527 -6.530464772 24.52738811 0.894063648 0.744442406 0.313006013 0.098465945 135.6680211 438644.5646 0.017122961 0.024244835 2.95E-07 6.530464772 -0.149621242 YLEES(ph)DEDDLF ddPTM_HeLa_CUDC101_4h_R1 5 YLEESDEDDLF 11 0 P11388;P11388-2;P11388-3;P11388-4;J3QR57 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 YLEES(1)DEDDLF;YLEES(1)DEDDLF;YLEES(1)DEDDLF;YLEES(1)DEDDLF;YLEES(1)DEDDLF ;;;; 145.25 0.0010734 240896800 16134.27 13767.83 12232.22 11783.61 13837.58 13020.14 12778.12 9524.61 11061.23 12757.67 TRUE FALSE FALSE 14243.03533 14192.00052 12893.53081 12264.19655 12816.80929 12771.80252 13270.97637 10608.8531 10605.28142 12681.78681 1.123109507 1.119085247 1.016696701 0.967071654 1.01064696 1.007098031 1.046459507 0.836542457 0.836260818 1 13.63047041 -6.529319361 22.7168865 1.064500226 0.982571421 0 0.094712332 58.06911739 204815.5639 0.010861977 0.01539285 2.96E-07 6.529319361 -0.081928805 S(ph)TTPPPAEPVSLPQEPPKPR ddPTM_HeLa_CUDC101_4h_R1 3 STTPPPAEPVSLPQEPPKPR 20 1 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 S(0.364)T(0.364)T(0.272)PPPAEPVSLPQEPPKPR;S(0.368)T(0.368)T(0.264)PPPAEPVSLPQEPPKPR;S(0.333)T(0.333)T(0.333)PPPAEPVSLPQEPPKPR ;; 149.8 1.16E-05 7092510000 20194.7 20491.6 17154 16665.8 17623.7 17358.5 16607.3 16843.1 17643 20251.1 TRUE FALSE FALSE 17827.50788 21122.92191 18081.39713 17345.50336 16323.63476 17027.41553 17247.84912 18760.45042 16915.74807 20130.64556 0.885590471 1.04929183 0.898202548 0.861646653 0.810884813 0.845845479 0.856795629 0.931934864 0.840298341 1 14.29710582 -6.529103993 24.98600667 0.953238058 0.859734864 0.286944248 0.060455735 127.4597807 511578.1439 0.00903635 0.012798175 2.96E-07 6.529103993 -0.093503195 LSAK(ac)PPAK ddPTM_HeLa_CUDC101_4h_R1 2 LSAKPPAK 8 1 P05114;A6NEL0;F2Z2W6;F2Z2Y5;H7BXJ5;A0A494C035 P05114 HMGN1 Non-histone chromosomal protein HMG-14 0 1 ; LSAK(1)PPAK;LSAK(1)PPAK 100.02 0.014777 32958000 15740.7 13825.4 14790.1 13322.3 15182.2 13818.6 14587.8 13617.1 13039.4 12714 FALSE TRUE FALSE 13895.59901 14251.34419 15589.69754 13865.64098 14062.23935 13555.03323 15150.45633 15167.21562 12501.91041 12638.37656 1.099476577 1.12762459 1.233520577 1.097106176 1.112661843 1.072529621 1.198766017 1.20009208 0.989202241 1 13.62552354 -8.431075852 0.51344797 0.993388872 1.152319819 0.603585207 0.048708011 0.535973681 0.296519652 0.038471739 0.015556298 3.71E-09 8.431075852 0.158930947 APVDEDRLS(ph)PLVAADSLLEHVR ddPTM_HeLa_CUDC101_4h_R1 5 APVDEDRLSPLVAADSLLEHVR 22 1 Q01094 Q01094 E2F1 Transcription factor E2F1 1 0 APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(0.999)PLVAADS(0.001)LLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR;APVDEDRLS(1)PLVAADSLLEHVR ;;;; 88.282 0.00025844 35250200 5498.31 4791.58 4545.95 3947.82 5624.31 5051.4 4443.82 3880.33 4977.59 5119.92 TRUE FALSE FALSE 4853.806437 4939.2029 4791.717808 4108.829164 5209.415857 4955.052961 4615.219626 4322.051082 4772.411633 5089.466488 0.953696512 0.970475572 0.941497074 0.807320212 1.023568162 0.973589859 0.906817962 0.84921496 0.937703715 1 12.31329872 -6.528619508 0.013510298 1.881752766 3.32E-07 0.100359884 0.05972667 1010.586377 6.719499079 455.4212784 479.8937229 2.96E-07 6.528619508 -1.881752434 GVQVPVS(ph)PGTIPQPVAR ddPTM_HeLa_CUDC101_4h_R1 1 GVQVPVSPGTIPQPVAR 17 0 Q6IE81-2;Q6IE81;Q6IE81-3;D6RCS1;D6RC05;D6RBB3;D6RFK0;D6RGE7 Q6IE81-2 JADE1 Protein Jade-1 1 0 GVQVPVS(0.972)PGT(0.028)IPQPVAR 65.477 0.035492 7019700 1128.3 1194.8 908.59 718.48 1026.6 804.19 804.49 1097 1117.6 1056.6 TRUE FALSE FALSE 996.0423844 1231.610372 957.7111237 747.7827199 950.8697633 788.8514156 835.5194488 1221.878046 1071.532055 1050.315296 0.948327029 1.172610145 0.911832025 0.71196023 0.9053184 0.751061532 0.795493936 1.163344046 1.020200371 1 10.03660676 -6.52825584 24.99518683 0.992194265 0.852860017 0.25220092 0.129606427 165.8781944 771074.5769 0.019299436 0.027342857 2.96E-07 6.52825584 -0.139334248 S(ph)RESLNVDVVK ddPTM_HeLa_CUDC101_4h_R1 1 SRESLNVDVVK 11 1 Q07866-6;Q07866-4;G3V5R9;Q07866-9;Q07866-7;H0YG16;G3V3H3;Q07866-10;Q07866-5;Q07866-3;G5E9S8;F8W6L3;Q07866;Q07866-8;Q07866-2;G3V2E7;E7EVH7;H0YJT3;H0YJL0;H0YJU9;H0YGB8 Q07866-6 KLC1 Kinesin light chain 1 1 0 S(0.875)RES(0.125)LNVDVVK 115.04 0.0031151 20747000 4129.8 3793.2 3379.4 3017 3954.7 3836.2 3315.8 2855.1 3695.8 3735.3 TRUE FALSE FALSE 3645.711104 3910.063996 3562.100586 3140.046301 3662.96966 3763.030877 3443.691517 3180.113043 3543.45756 3713.082269 0.981855731 1.05305073 0.959337911 0.845671082 0.986503771 1.01345206 0.927448213 0.856461778 0.954317007 1 11.85840157 -6.527541509 24.93391592 0.996308193 0.931051186 0.286078645 0.052855175 129.2247466 691020.1425 0.008056637 0.011418573 2.97E-07 6.527541509 -0.065257006 KGS(ph)DALRPPVPQGEDEVPK ddPTM_HeLa_CUDC101_4h_R1 1 KGSDALRPPVPQGEDEVPK 19 2 Q8N3D4;E9PIH6 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 KGS(1)DALRPPVPQGEDEVPK 58.246 0.015482 79158000 1461.9 1353 1468.5 1572.6 1700.9 1597.3 1514.7 1507.6 1308.7 1687.2 TRUE FALSE FALSE 1290.538298 1394.684326 1547.891552 1636.737425 1575.427996 1566.834164 1573.122486 1679.21909 1254.754832 1677.164459 0.769476297 0.831572789 0.922921746 0.975895605 0.939340198 0.934216174 0.937965551 1.001225062 0.748140604 1 10.71180845 -6.527394706 23.84678672 0.883328239 0.953813359 0.319478067 0.071490599 118.9910537 628334.7632 0.014154878 0.020070702 2.97E-07 6.527394706 0.07048512 EAALPPVS(ph)PLKAALSEEELEK ddPTM_HeLa_CUDC101_4h_R1 2 EAALPPVSPLKAALSEEELEK 21 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 EAALPPVS(1)PLKAALSEEELEK;EAALPPVS(1)PLKAALSEEELEK ; 111.65 1.20E-05 58535000 3936.2 4531.5 4180.1 4208.1 6745.2 5271.1 5322.3 5245.6 5248.7 3369.1 TRUE FALSE FALSE 3474.804603 4671.110144 4406.08885 4379.724507 6247.620034 5170.56255 5527.582894 5842.737901 5032.346364 3349.060443 1.0375461 1.394752416 1.315619388 1.307747227 1.865484407 1.543884512 1.650487648 1.744590162 1.502614375 1 11.7095407 -6.527348484 0.701536972 0.99846664 1.711855642 0.425459374 0.203849752 0.180610388 0.178364809 0.027327338 0.055268691 2.97E-07 6.527348484 0.713389002 EMFPYEAS(ph)TPTGISASCR ddPTM_HeLa_CUDC101_4h_R1 1 EMFPYEASTPTGISASCR 18 0 P42167;G5E972;H0YJH7;P42167-2 P42167 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 EMFPYEAS(0.499)T(0.499)PT(0.002)GISASCR 104.16 0.0004408 0 1402.1 1127.1 878.05 728.34 726.5 849.83 833.42 416.53 1104.4 1090 TRUE FALSE FALSE 1237.747963 1161.824615 925.520039 758.0448534 672.9075424 833.6209087 865.5652886 463.9460915 1058.876165 1083.516632 1.142343299 1.072272064 0.854181664 0.699615337 0.621040345 0.769366048 0.79884818 0.428185482 0.977258801 1 10.08150558 -6.527300746 2.403947174 1.070181237 0.67304393 0.750984878 0.103933017 0.103357359 1.200118559 0.016720389 0.025721847 2.97E-07 6.527300746 -0.397137306 LSDK(ac)GLK ddPTM_HeLa_CUDC101_4h_R1 2 LSDKGLK 7 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1X7SBS1 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 1 ; LSDK(1)GLK;LSDK(1)GLK 98.629 0.020797 18093500 11836.1 10833.3 10136.5 10561 10786 10535.5 10504.4 12456.8 9682.4 8098.7 FALSE TRUE FALSE 10448.6903 11167.06113 10684.50985 10991.72323 9990.338269 10334.55289 10909.55823 13874.83176 9283.287374 8050.528572 1.297888729 1.387121483 1.32718116 1.365341807 1.240954327 1.2837111 1.355135645 1.72346842 1.153127685 1 12.97486779 -12.59135357 0.120820646 1.09E-13 1.575960728 0.522076905 0.121424158 34.23346246 0.374472269 8.879998397 0.580206203 2.56E-13 12.59135357 1.575960728 LSDLDSETR ddPTM_HeLa_CUDC101_4h_R1 2 LSDLDSETR 9 0 Q9Y266 Q9Y266 NUDC Nuclear migration protein nudC 0 0 ; ; 158.07 0.00048729 53790000 7785.5 7230.1 7531.2 7133.1 7627.6 7274.6 6372.9 7145.3 7078.1 6830 FALSE FALSE TRUE 6872.895492 7452.850811 7938.359453 7424.01865 7064.927144 7135.849125 6618.704888 7958.69207 6786.337722 6789.374856 1.012301668 1.097722687 1.169232753 1.093476028 1.040585811 1.051031837 0.974862197 1.172227523 0.999552664 1 12.72906303 -7.303635682 7.007767908 1.005660985 1.081776616 0.313629044 0.055137595 0.222958317 30.77270411 0.009428621 0.010810705 4.97E-08 7.303635682 0.076115631 LQPTPPIPAPAPKPAAPPRPLDRES(ph)PGVENK ddPTM_HeLa_CUDC101_4h_R1 1 LQPTPPIPAPAPKPAAPPRPLDRESPGVENK 31 3 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 LQPTPPIPAPAPKPAAPPRPLDRES(1)PGVENK 51.052 0.010911 14793000 2100 1578.9 1739.1 1851.8 2087.4 2100.6 1722.3 1592.5 1922 1687.7 TRUE FALSE FALSE 1853.841183 1627.544038 1833.121006 1927.324408 1933.416661 2060.534555 1788.729688 1773.783763 1842.774346 1677.661485 1.105015046 0.970126603 1.092664416 1.148816031 1.152447426 1.22821831 1.06620418 1.057295395 1.098418461 1 10.71223593 -6.526289148 24.95875451 1.044367655 1.132364725 0.332072271 0.058270327 93.41371079 683637.1222 0.009929522 0.014082371 2.98E-07 6.526289148 0.087997069 LSDQFHDILIR ddPTM_HeLa_CUDC101_4h_R1 2 LSDQFHDILIR 11 0 A0A024QZ42;O75340-2;O75340;H0Y9X3;A0A087WZ38 A0A024QZ42 PDCD6 Programmed cell death protein 6 0 0 ; ; 168.85 9.28E-07 31420000 16500.1 11324 11245.3 10852.1 18842.1 15176.3 14762.6 12791.3 16460.1 14032.9 FALSE FALSE TRUE 14565.98329 11672.87902 11853.25493 11294.69554 17452.15582 14886.83736 15331.99843 14247.40989 15781.60771 13949.43169 1.044199048 0.836799612 0.849730312 0.809688581 1.251101566 1.067200277 1.099112765 1.021361315 1.131344134 1 13.76791873 -5.754905672 24.9999972 0.978557673 1.105902868 0.320909258 0.110948139 181.7295802 695347.5495 0.016351357 0.032097254 1.76E-06 5.754905672 0.127345195 SPTAPSVFS(ph)PTGNR ddPTM_HeLa_CUDC101_4h_R1 2 SPTAPSVFSPTGNR 14 0 H0Y3X6;A0A0C4DFX9;Q9H3P2;C9JEM7;H7C2C7;C9JHL4 H0Y3X6 NELFA Negative elongation factor A 1 0 SPTAPSVFS(0.5)PT(0.5)GNR;SPTAPS(0.001)VFS(0.879)PT(0.12)GNR ; 146.84 0.00032526 29348000 2685.3 2403 2149.94 1766 2090.87 2031.5 1729.31 1634.89 2672.2 2684.8 TRUE FALSE FALSE 2370.533205 2477.033582 2266.17226 1838.025113 1936.630686 1992.752522 1796.010066 1820.999269 2562.050785 2668.83069 0.888229146 0.928134404 0.849125524 0.688700531 0.725647638 0.746676261 0.672957664 0.682321016 0.959990004 1 11.38199207 -6.525570971 0.439279137 0.983665875 0.648534169 0.884798918 0.040295906 0.282427715 0.114384769 0.01639998 0.037922704 2.98E-07 6.525570971 -0.335131705 LSDVDRDGMLDDEEFALASHLIEAK ddPTM_HeLa_CUDC101_4h_R1 2 LSDVDRDGMLDDEEFALASHLIEAK 25 1 Q9NZN4;Q9NZN4-2 Q9NZN4 EHD2 EH domain-containing protein 2 0 0 ; ; 74.579 0.00019192 13106600 5244.7 4514.8 4166.5 4474.8 5123.9 4946.1 4436.7 4884 5005.5 4699.4 FALSE FALSE TRUE 4629.924216 4653.895637 4391.753593 4657.301686 4745.920105 4851.761383 4607.825005 5439.974818 4799.171171 4671.44776 0.991111205 0.99624268 0.940126877 0.996971801 1.015942027 1.038599088 0.986380506 1.16451582 1.027341291 1 12.18965402 TLSPSSGYSSQSGT(ph)PTLPPK ddPTM_HeLa_CUDC101_4h_R1 1 TLSPSSGYSSQSGTPTLPPK 20 0 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 TLSPSSGYSSQS(0.002)GT(0.993)PT(0.005)LPPK 228.39 1.92E-33 15118000 2879.7 3134.5 2422.2 2106.7 2694.1 2172.4 2008.7 2733 3080.7 2902.6 TRUE FALSE FALSE 2542.145931 3231.07023 2553.151459 2192.620332 2495.36161 2130.965089 2086.176232 3044.113673 2953.712242 2885.335206 0.881057399 1.119824907 0.884871696 0.759918753 0.86484288 0.738550268 0.723027337 1.05502947 1.023698126 1 11.49452322 -6.524825353 24.99187531 0.957695346 0.819765843 0.346189155 0.107341658 61.43103098 788689.5951 0.016318519 0.023167533 2.99E-07 6.524825353 -0.137929503 SGSLDDS(ph)FSDFQELPASSK ddPTM_HeLa_CUDC101_4h_R1 3 SGSLDDSFSDFQELPASSK 19 0 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-6 SYNRG Synergin gamma 1 0 SGSLDDS(0.994)FS(0.005)DFQELPASSK;SGSLDDS(0.968)FS(0.032)DFQELPASSK;S(0.016)GS(0.093)LDDS(0.89)FS(0.002)DFQELPASSK ;; 239.43 2.63E-72 13676000 9353.3 8001.9 7461.8 6582.7 8683.4 7707.4 7095.9 7802.2 8007.1 7925.7 TRUE FALSE FALSE 8256.920353 8248.429054 7865.207479 6851.170959 8042.842882 7560.394186 7369.59124 8690.37091 7677.043949 7878.557584 1.048024371 1.046946597 0.998305514 0.869597117 1.020852205 0.959616542 0.935398537 1.103040857 0.974422522 1 12.94371581 -6.523451421 24.99533262 1.025012637 0.972464287 0.080569276 0.059756046 27.26646497 1190080.508 0.008664072 0.012318408 3.00E-07 6.523451421 -0.052548349 NMT(ph)NDKNS(ph)LES(ph)MNISS(ph)SSSTEENPK ddPTM_HeLa_CUDC101_4h_R1 1 NMTNDKNSLESMNISSSSSTEENPK 25 1 E9PQV5;Q494V2;Q494V2-2 E9PQV5 CCDC37 Coiled-coil domain-containing protein 37 4 0 NMT(0.929)NDKNS(0.92)LES(0.92)MNIS(0.252)S(0.696)S(0.071)S(0.071)S(0.071)T(0.071)EENPK 45.011 0.0026498 0 715.2 802.15 626.05 526.88 602.76 680.46 628.9 636.64 825.66 734.74 TRUE FALSE FALSE 631.3653402 826.8632907 659.8961567 548.3684438 558.2955957 667.4813592 653.1568837 709.1125242 791.6259453 730.3697338 0.864446199 1.13211604 0.903509724 0.750809376 0.76440133 0.913895152 0.894282517 0.970895276 1.08387014 1 9.512483172 -6.523115186 24.99999917 0.952190601 0.855487445 0.291216623 0.098583542 11.03335724 1166547.882 0.015419437 0.021929961 3.00E-07 6.523115186 -0.096703157 LYISNTFNPAKPDAEDS(ph)DGSIASWELR ddPTM_HeLa_CUDC101_4h_R1 2 LYISNTFNPAKPDAEDSDGSIASWELR 27 1 Q6STE5-2;Q6STE5 Q6STE5-2 SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 1 0 LYISNTFNPAKPDAEDS(0.981)DGS(0.018)IAS(0.001)WELR;LYISNTFNPAKPDAEDS(0.763)DGS(0.222)IAS(0.015)WELR ; 104.31 2.38E-07 66684000 2764.2 2953.3 2297.4 2141.5 2337.6 2312.4 2584.8 1894.67 2319.2 2542.9 TRUE FALSE FALSE 2440.184666 3044.287672 2421.604393 2228.839626 2165.159905 2268.294823 2684.496602 2110.351574 2223.601594 2527.774718 0.965348949 1.204335043 0.957998502 0.881739821 0.856547813 0.897348489 1.061999941 0.83486537 0.87966763 1 11.30365218 -6.522981586 24.99999992 1.003609987 0.912656931 0.213729089 0.094774736 4.50957895 1096084.082 0.013601968 0.019346982 3.00E-07 6.522981586 -0.090953055 STS(ph)FGVPNANSIK ddPTM_HeLa_CUDC101_4h_R1 1 STSFGVPNANSIK 13 0 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6;P53814-2;H7BZZ8;B5MCI0;A0A096LNK9 A0A087WVP4 SMTN Smoothelin 1 0 S(0.165)T(0.165)S(0.67)FGVPNANS(0.001)IK 100.22 0.0014251 0 1464.2 1322.8 1082.3 1001.3 1220.8 1161.8 1086.3 926.93 935.52 1047 TRUE FALSE FALSE 1292.568696 1363.5539 1140.812412 1042.137342 1130.744016 1139.640601 1128.198955 1032.447964 896.9574696 1040.772397 1.241932145 1.310136494 1.096120933 1.001311473 1.086446969 1.094995028 1.08400161 0.992001678 0.861819041 1 10.02343889 -6.52297846 24.99998973 1.135510601 1.056957305 0.014329392 0.120604119 6.754658399 1693182.407 0.018056036 0.025685253 3.00E-07 6.52297846 -0.078553296 SSLGQSAS(ph)ET(ph)EEDTVSVSK ddPTM_HeLa_CUDC101_4h_R1 1 SSLGQSASETEEDTVSVSK 19 0 E9PPJ0;Q13435;E9PJ04;H0YCG1 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 2 0 S(0.001)S(0.002)LGQS(0.381)AS(0.931)ET(0.653)EEDT(0.032)VS(0.001)VSK 131.37 0.00014867 18665000 8102 7330.6 6461.7 6663.3 6719.9 6604.4 5706.6 5025.5 8673.8 8739.6 TRUE FALSE FALSE 7152.295842 7556.447097 6811.039048 6935.058175 6224.186365 6478.432074 5926.705474 5597.582606 8316.262293 8687.616471 0.823274815 0.869795199 0.783993984 0.798269376 0.716443502 0.745708802 0.682201556 0.644317417 0.957254768 1 13.0847447 -6.522765694 0.055405541 1.585720024 1.20E-13 0.935513371 0.027631768 8.228267952 0.226596772 2.867635937 3.549194784 3.00E-07 6.522765694 -1.585720024 LSEK(ac)SVEER ddPTM_HeLa_CUDC101_4h_R1 2 LSEKSVEER 9 1 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 0 1 ; LSEK(1)SVEER;LSEK(1)SVEER 114.97 0.0026821 11923700 3437.1 3587.6 3306.5 3260.8 3867 3442.5 2727.6 1929.37 3940.6 4666 FALSE TRUE FALSE 3034.208348 3698.129704 3485.259392 3393.789518 3581.739114 3376.840048 2832.804446 2149.001682 3778.1668 4638.246424 0.654171441 0.797312037 0.75141747 0.731696682 0.772218374 0.728042398 0.610749017 0.463322016 0.814567932 1 12.17936376 -13.52287875 0.208130426 2.532763639 0.633191406 0.413510092 0.102134689 24.33523506 0.30102992 15.20004437 0.08655037 3.00E-14 13.52287875 -1.899572234 KAPAGPSLEETSVSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 KAPAGPSLEETSVSSPK 17 1 A0A087WXZ7;K7EIX2;Q6AI08 A0A087WXZ7 HEATR6 HEAT repeat-containing protein 6 1 0 KAPAGPSLEETSVS(0.003)S(0.997)PK;KAPAGPSLEETSVS(0.087)S(0.912)PK ; 161.31 2.03E-05 150783000 17161.3 13806 14982 16546.8 17159 16874.1 16716.4 13428.9 14931.1 15402.2 TRUE FALSE FALSE 15149.67843 14231.3465 15791.97224 17221.65003 15893.21476 16552.25466 17361.15715 14957.59169 14315.63374 15310.58703 0.98949037 0.929510179 1.031441329 1.124819708 1.038053912 1.08109863 1.133931515 0.976944363 0.93501534 1 13.90224198 -6.522737133 24.9999958 0.989531157 1.073694477 0.493199808 0.048592218 3.281312883 579270.923 0.006536803 0.009301891 3.00E-07 6.522737133 0.08416332 S(ph)PS(ph)PEPIYNSEGK ddPTM_HeLa_CUDC101_4h_R1 2 SPSPEPIYNSEGK 13 0 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637;Q15637-7;Q15637-5 Q15637-6 SF1 Splicing factor 1 2 0 S(1)PS(1)PEPIYNSEGK;S(1)PS(0.992)PEPIY(0.008)NSEGK ; 134.04 0.0092419 28854800 6309 4858.6 4590.9 4422.4 4107.6 4615.8 4046.6 3388.2 5675.7 5520.7 TRUE FALSE FALSE 5569.468584 5008.287707 4839.097941 4602.764587 3804.590531 4527.761305 4202.678718 3773.898992 5441.745244 5487.862631 1.014870262 0.912611711 0.881781901 0.838717165 0.693273645 0.825050044 0.765813396 0.687681024 0.991596476 1 12.42202865 -6.522614666 1.026327786 1.00879298 0.74623469 0.86367277 0.042447885 0.110649162 0.232692415 0.007540508 0.013461003 3.00E-07 6.522614666 -0.262558291 LSEVDIDDDERPHNPHK ddPTM_HeLa_CUDC101_4h_R1 1 LSEVDIDDDERPHNPHK 17 1 D6REK3;Q6UX04-2;Q6UX04 D6REK3 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog 0 0 44.294 0.039309 12071000 5066.5 4072.3 4555.8 4336.2 5047.7 4138.2 4070.5 3794.1 5039.2 5104.2 FALSE FALSE TRUE 4472.61255 4197.762736 4802.100329 4513.048979 4675.341227 4059.27073 4227.500549 4226.005008 4831.482043 5073.839991 0.881504454 0.827334473 0.946442997 0.889474045 0.921460124 0.800039169 0.83319548 0.832900725 0.952233821 1 12.30886231 -13.52287875 0.139573017 1.488890401 0.811358698 0.532151565 0.042553192 35.60005477 0.345963853 4.787480093 0.121892159 3.00E-14 13.52287875 -0.677531703 ITVQAS(ph)PNLDK ddPTM_HeLa_CUDC101_4h_R1 2 ITVQASPNLDK 11 0 Q5TCX8;Q5TCX8-2 Q5TCX8 MLK4 Mitogen-activated protein kinase kinase kinase MLK4 1 0 IT(0.206)VQAS(0.794)PNLDK;ITVQAS(1)PNLDK ; 167.73 9.72E-06 34369000 6607.4 6053.8 5318.5 4798.9 5828 5533.6 5347.2 4941 5726.2 5769.1 TRUE FALSE FALSE 5832.890588 6240.310402 5606.034198 4994.619885 5398.080051 5428.0558 5553.443295 5503.463468 5490.163612 5734.785137 1.017107084 1.08815069 0.977549126 0.870934092 0.941287236 0.946514241 0.968378616 0.959663411 0.957344256 1 12.48552372 -6.522130756 24.99946297 1.015192368 0.938249802 0.478347285 0.038573326 16.28728384 544362.9618 0.005457872 0.007772524 3.01E-07 6.522130756 -0.076942566 LSFDK(ac)DAMVAR ddPTM_HeLa_CUDC101_4h_R1 1 LSFDKDAMVAR 11 1 P37837;F2Z393 P37837 TALDO1 Transaldolase 0 1 LSFDK(1)DAMVAR 95.618 0.015357 399390 325.16 215.35 0 144.77 327.73 245.51 203.07 147.18 295.45 186.82 FALSE TRUE FALSE 287.0452377 221.9846782 0 150.6743463 303.5540108 240.8273058 210.9024779 163.9343763 283.2714259 185.7087863 1.545673974 1.19533751 0 0.811347429 1.63457 1.296800817 1.135662357 0.882749705 1.525352847 1 7.536898264 -6.9795103 24.99984678 1.263617834 0.973213048 0.143969147 0.420425358 491.4996309 599685.8198 0.07428173 0.097620048 1.05E-07 6.9795103 -0.290404786 TPSPKEEDEEPES(ph)PPEKK ddPTM_HeLa_CUDC101_4h_R1 1 TPSPKEEDEEPESPPEKK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 TPSPKEEDEEPES(1)PPEKK 47.64 0.036622 2917100000 4345.1 5092.3 3951.3 3828.7 4089.7 4073.3 3743.8 4144.4 3603.4 4554.8 TRUE FALSE FALSE 3835.773965 5249.187727 4164.91923 3984.850935 3788.010979 3995.608589 3888.19962 4616.181744 3454.866327 4527.707847 0.847177887 1.159347711 0.919873669 0.88010337 0.836628843 0.88247933 0.858756738 1.019540549 0.763049747 1 12.14456516 -6.521994585 24.99999959 0.947773 0.890518411 0.039767096 0.106050118 73.27213074 2071818.571 0.015305261 0.021799533 3.01E-07 6.521994585 -0.05725459 MSES(ph)PTPCSGSSFEETEALVNTAAK ddPTM_HeLa_CUDC101_4h_R1 3 MSESPTPCSGSSFEETEALVNTAAK 25 0 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 MS(0.071)ES(0.849)PT(0.071)PCS(0.003)GS(0.003)S(0.003)FEETEALVNTAAK;MS(0.093)ES(0.647)PT(0.25)PCS(0.007)GS(0.001)S(0.001)FEETEALVNTAAK;MS(0.242)ES(0.705)PT(0.053)PCSGSSFEETEALVNTAAK ;; 100.68 3.93E-06 35991600 10372.5 9456.5 8761.3 8050.5 10162.2 9165.2 8606.5 8306.9 10209.7 9759.3 TRUE FALSE FALSE 9156.651274 9747.843556 9234.962379 8378.834187 9412.554752 8990.38908 8938.455588 9252.523918 9788.851845 9701.25125 0.943862914 1.004802711 0.951935183 0.863685928 0.970241313 0.926724692 0.921371415 0.953745417 1.009029824 1 13.24395512 -6.5217587 24.99706718 0.975254252 0.927063241 0.433107173 0.031995544 36.67504423 818516.0767 0.005056391 0.007204586 3.01E-07 6.5217587 -0.04819101 KWPQGAVPQLPPSAPAT(ph)SEMTTTPERPR ddPTM_HeLa_CUDC101_4h_R1 2 KWPQGAVPQLPPSAPATSEMTTTPERPR 28 2 P27708;F8VPD4;H7BZB3 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 KWPQGAVPQLPPS(0.058)APAT(0.188)S(0.188)EMT(0.188)T(0.188)T(0.188)PERPR;KWPQGAVPQLPPS(0.055)APAT(0.189)S(0.189)EMT(0.189)T(0.189)T(0.189)PERPR ; 72.227 6.78E-05 86891000 4818.7 3916.5 3468.7 3256.4 3643.2 3703.1 3301.8 3073.1 3341 3506.2 TRUE FALSE FALSE 4253.859291 4037.162723 3656.228414 3389.210067 3374.448394 3632.469537 3429.151532 3422.929282 3203.282566 3485.344966 1.220498783 1.158325148 1.049029135 0.972417393 0.968182038 1.042212341 0.983877224 0.982091964 0.919071884 1 11.76708574 -6.521308912 4.868556311 1.11107148 0.992265581 0.139740546 0.081931163 0.181274909 12.00237005 0.013569937 0.020033095 3.01E-07 6.521308912 -0.118805899 QSFDDNDS(ph)EELEDKDSK ddPTM_HeLa_CUDC101_4h_R1 5 QSFDDNDSEELEDKDSK 17 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 QSFDDNDS(1)EELEDKDSK;QS(0.001)FDDNDS(0.588)EELEDKDS(0.411)K;QSFDDNDS(0.999)EELEDKDS(0.001)K;QS(0.001)FDDNDS(0.963)EELEDKDS(0.036)K;QSFDDNDS(0.991)EELEDKDS(0.009)K ;;;; 130.52 0.00014582 2572100600 11617.91 11078.33 9877.8 9290.68 10364.76 10111.46 9726.74 10258.3 12330.4 11024.6 TRUE FALSE FALSE 10256.0762 11419.64022 10411.82375 9669.594088 9600.172304 9918.600747 10101.90362 11426.06341 11822.13569 10959.02519 0.935856614 1.042030657 0.95006842 0.882340712 0.876006044 0.905062319 0.921788521 1.042616767 1.078757963 1 13.41983186 -6.52039743 24.99834211 0.975324049 0.920935452 0.242745584 0.059901719 124.3849225 1253138.745 0.008238374 0.011763283 3.02E-07 6.52039743 -0.054388597 TAPPALPTGYDS(ph)EEEEESRPMSYDEK ddPTM_HeLa_CUDC101_4h_R1 1 TAPPALPTGYDSEEEEESRPMSYDEK 26 1 P25440-2;P25440;A0A0G2JK44;A0A140T9E9;H0Y6K2;P25440-3;P25440-4;A0A0G2JHN8;A0A140T9I1 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 TAPPALPT(0.067)GY(0.139)DS(0.794)EEEEESRPMSYDEK 99.603 1.81E-06 142300000 658.11 708.79 491.89 374.62 482.46 553.59 420.5 454.86 541.23 518.32 TRUE FALSE FALSE 580.9673434 730.6269798 518.4830613 389.8986228 446.869887 543.0311931 436.7188259 506.6394238 518.9202703 515.2370096 1.127573005 1.418040564 1.006300114 0.756736445 0.867309372 1.053944462 0.84760764 0.983313338 1.007148673 1 9.009092416 -6.520148433 24.99609742 1.094637527 0.902931576 0.396803828 0.133136639 104.7212001 958728.966 0.0219159 0.031321847 3.02E-07 6.520148433 -0.191705951 LSGFSFK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 LSGFSFKK 8 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 0 1 LSGFSFK(1)K 97.431 0.017759 1166300 774.78 536.67 442.97 633.71 472.7 568.92 722.96 721.24 403.3 298.92 FALSE TRUE FALSE 683.9614629 553.2041666 466.9182981 659.5554329 437.8298628 558.0687989 750.8448094 803.3430462 386.6758033 297.1420105 2.301799943 1.861750096 1.571364134 2.219664031 1.473470082 1.878121501 2.526888769 2.703566032 1.301316507 1 8.215008781 -9.389145223 0.891897331 0.935974312 2.060200671 0.475084037 0.380627054 0.449770606 0.579519137 0.357173466 0.073180729 4.08E-10 9.389145223 1.124226359 EANANGSS(ph)PEPVK ddPTM_HeLa_CUDC101_4h_R1 3 EANANGSSPEPVK 13 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 EANANGS(0.081)S(0.919)PEPVK;EANANGS(0.097)S(0.903)PEPVK;EANANGS(0.081)S(0.919)PEPVK ;; 217.01 1.53E-24 424241000 23960.5 21119.1 20729 19021.6 18134.7 17909.3 18174 15426.1 18366.7 25119.8 TRUE FALSE FALSE 21151.88651 21769.75444 21849.67244 19797.38307 16796.93931 17567.70994 18874.97727 17182.14487 17609.61685 24970.38631 0.847078866 0.871822893 0.875023404 0.792834473 0.672674387 0.703541776 0.755894484 0.688100883 0.705220041 1 14.60793052 -6.52007343 0.119021019 1.176721391 0.441445926 0.020635938 0.099579281 3.259095672 0.203125041 0.469356077 0.726374262 3.02E-07 6.52007343 -0.735275465 GPVSGS(ph)PDSMNASR ddPTM_HeLa_CUDC101_4h_R1 3 GPVSGSPDSMNASR 14 0 A0A499FJS7;O14920-4;O14920-2;O14920 A0A499FJS7 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta 1 0 GPVS(0.007)GS(0.918)PDS(0.075)MNASR;GPVS(0.032)GS(0.95)PDS(0.018)MNASR;GPVS(0.01)GS(0.958)PDS(0.032)MNASR ;; 209.53 1.06E-23 120499900 6514.9 5296.6 5540 4949 5390.13 5430 4880.03 4590.85 5174.3 5964 TRUE FALSE FALSE 5751.233298 5459.781968 5839.509158 5150.841611 4992.510849 5326.431797 5068.254392 5113.453807 4961.013164 5928.525863 0.970095 0.920934157 0.984985019 0.868823335 0.842116736 0.898441184 0.854892853 0.86251691 0.836803833 1 12.53345771 -6.519813978 0.724539777 0.990598644 0.856440445 0.082711332 0.05598991 0.206894481 0.217597906 0.005967384 0.01199529 3.02E-07 6.519813978 -0.1341582 GAGGS(ph)PVGVEEGLVNVGTGQK ddPTM_HeLa_CUDC101_4h_R1 2 GAGGSPVGVEEGLVNVGTGQK 21 0 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 0 GAGGS(1)PVGVEEGLVNVGTGQK;GAGGS(1)PVGVEEGLVNVGTGQK ; 195.86 1.07E-18 62564000 6395.9 5853.8 5246.8 4862.2 5516.8 5955.5 4716.9 4887.2 6236.7 5772.2 TRUE FALSE FALSE 5646.182298 6034.14864 5530.457879 5060.501532 5109.836655 5841.90876 4898.832413 5443.539093 5979.620586 5737.866698 0.984021169 1.051636254 0.963852625 0.881948257 0.890546422 1.018132534 0.853772433 0.94870435 1.042133061 1 12.48629874 -6.517850881 24.84573335 0.997209018 0.919378208 0.480187624 0.047234556 143.658238 709902.954 0.006575303 0.009455145 3.03E-07 6.517850881 -0.07783081 T(ph)PSFELPDASERPPTYCELVPR ddPTM_HeLa_CUDC101_4h_R1 1 TPSFELPDASERPPTYCELVPR 22 1 Q9BRG2;Q9BRG2-2 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 0 T(0.495)PS(0.495)FELPDAS(0.01)ERPPTYCELVPR 63.268 0.011968 21873000 135.07 120.77 131.48 178.28 176.61 116.37 165.89 113.57 178.59 136.42 TRUE FALSE FALSE 119.2372994 124.4907806 138.5882065 185.551029 163.5818322 114.1504361 172.2884329 126.4983497 171.2284446 135.6085678 0.87927556 0.918015599 1.021972349 1.368283966 1.206279477 0.841764189 1.27048339 0.932819746 1.262666861 1 7.083304521 -6.51779758 23.31357553 0.940976031 1.12838377 0.021522186 0.17762634 91.65000413 420512.6585 0.022266874 0.032049729 3.04E-07 6.51779758 0.187407739 LSILYPATTGR ddPTM_HeLa_CUDC101_4h_R1 2 LSILYPATTGR 11 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 0 ; ; 201.61 7.35E-08 3850200 1342.16 1228.84 1125.73 1239.37 1410.92 1114.15 1300.68 905.31 1068.21 943.7 FALSE FALSE TRUE 1184.834039 1266.699104 1186.590369 1289.916866 1306.839243 1092.899445 1350.847663 1008.366831 1024.177932 938.0868304 1.263032377 1.350300487 1.264904623 1.375050607 1.393089851 1.165030155 1.440002801 1.074918439 1.091773062 1 9.873577656 -8.857600698 0.674246101 0.992876426 1.302632845 0.44583072 0.107208659 0.416750129 0.34839533 0.069102872 0.021459901 1.39E-09 8.857600698 0.309756419 SKPIPIMPAS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 3 SKPIPIMPASPQK 13 1 O00429-7;O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 O00429-7 DNM1L Dynamin-1-like protein 1 0 SKPIPIMPAS(1)PQK;SKPIPIMPAS(1)PQK;SKPIPIMPAS(1)PQK ;; 158.45 0.00036343 301593000 16506.9 12969.9 12450.9 12772.7 12726.7 12158.6 10777.7 11191 13725.1 14922.9 TRUE FALSE FALSE 14571.9862 13369.48725 13124.03332 13293.62591 11787.8767 11926.69496 11193.3995 12464.9382 13159.34557 14834.13793 0.982327809 0.90126486 0.884718302 0.896150891 0.794645213 0.80400324 0.754570273 0.840287334 0.887098774 1 13.85663347 -6.517155628 0.692970833 0.99815863 0.786131154 0.631067006 0.045342036 0.138101143 0.133012789 0.006139683 0.012575961 3.04E-07 6.517155628 -0.212027476 AAAAWEERFS(ph)SLRR ddPTM_HeLa_CUDC101_4h_R1 1 AAAAWEERFSSLRR 14 2 C9JY79;Q9H254-4;Q9H254;Q9H254-3 C9JY79 SPTBN4 "Spectrin beta chain, non-erythrocytic 4" 1 0 AAAAWEERFS(0.781)S(0.219)LRR 95.183 0.0086 2830000 184.71 114.15 193.12 232.38 170.19 270.55 249.7 130.29 224.36 241.28 TRUE FALSE FALSE 163.0585738 117.6668262 203.5606514 241.8574608 157.6354228 265.3897095 259.3310126 145.1216869 215.1117858 239.8448558 0.679850202 0.49059558 0.848718021 1.008391279 0.657239123 1.106505739 1.081244839 0.60506483 0.896878881 1 7.905957687 -6.51638198 24.83103708 0.810676302 0.903871831 0.062336097 0.199098167 841.5299713 3216383.101 0.03427577 0.049505158 3.05E-07 6.51638198 0.09319553 EPSAT(ph)PPISNLTK ddPTM_HeLa_CUDC101_4h_R1 4 EPSATPPISNLTK 13 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 EPS(0.077)AT(0.921)PPIS(0.002)NLTK;EPS(0.056)AT(0.944)PPISNLTK;EPS(0.073)AT(0.918)PPIS(0.009)NLTK;EPS(0.134)AT(0.842)PPIS(0.022)NLT(0.002)K ;;; 134.4 0.0045753 77989000 10485 10233.3 8789.7 8037.7 9417.3 9165.1 9202.4 6435.7 9601.7 10265.5 TRUE FALSE FALSE 9255.964194 10548.57584 9264.897769 8365.512148 8722.604541 8990.290988 9557.339651 7168.314074 9205.913862 10204.44035 0.907052604 1.033724093 0.907928064 0.819791371 0.854785196 0.881017545 0.936586361 0.702470084 0.902147844 1 13.31690944 -6.515655681 8.059799021 0.961216474 0.849058026 0.424585157 0.066518976 0.102850671 54.57279113 0.010075716 0.014781843 3.05E-07 6.515655681 -0.112158448 MPIEDSS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 1 MPIEDSSPEK 10 0 A0A088AWL3;O75376;O75376-2 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 MPIEDS(0.028)S(0.972)PEK 106.67 0.0096359 13587000 2926.9 1828.5 2039.2 1964.8 1582.1 1852.2 1491.4 1783.6 2282.7 2237.6 TRUE FALSE FALSE 2583.813219 1884.833918 2149.44532 2044.933037 1465.391635 1816.872371 1548.923798 1986.637814 2188.60614 2224.290656 1.161634705 0.84738652 0.966350919 0.919364127 0.658813016 0.816832264 0.696367533 0.893155672 0.983956901 1 11.11912961 -6.515523256 1.122694881 1.070987852 0.770828258 0.503322487 0.099500859 0.227864029 0.573377461 0.018582384 0.032522183 3.05E-07 6.515523256 -0.300159594 (ac)S(ph)FEGGDGAGPAMLATGTAR ddPTM_HeLa_CUDC101_4h_R1 3 SFEGGDGAGPAMLATGTAR 19 0 Q96B36-3 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 1 0 S(1)FEGGDGAGPAMLATGTAR;S(1)FEGGDGAGPAMLATGTAR;S(1)FEGGDGAGPAMLATGTAR ;; 168.32 8.98E-18 13099000 623.33 311.095 519.33 664.5 770.01 506.15 520.38 411.08 634.9 543.91 TRUE FALSE FALSE 550.2642023 320.6794682 547.4065507 691.6011822 713.2078964 496.4960321 540.4512309 457.8756856 608.7291533 540.6747991 1.017735991 0.593109701 1.012450648 1.279144475 1.319106971 0.918289576 0.999586502 0.846859677 1.125869292 1 9.078617304 -6.514920935 24.96714907 0.969146142 1.080876993 0.095635881 0.187922569 828.1176804 2598171.295 0.029672265 0.043080897 3.06E-07 6.514920935 0.111730851 TSDLRDEASS(ph)VTR ddPTM_HeLa_CUDC101_4h_R1 1 TSDLRDEASSVTR 13 1 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 TSDLRDEAS(0.208)S(0.792)VTR 174.47 1.46E-06 15733000 4612.8 3611 3276.3 3297.8 3011.5 3298.5 3192.4 3037.6 4076.6 3590.4 TRUE FALSE FALSE 4072.094577 3722.25063 3453.426688 3432.298538 2789.347645 3235.586608 3315.531937 3383.388106 3908.560823 3569.044141 1.140948225 1.042926476 0.967605485 0.961685651 0.781539128 0.906569513 0.92896916 0.94798158 1.095128182 1 11.80132203 -6.514637198 1.947429626 1.067112141 0.897901371 0.661862461 0.055879518 0.184262349 1.396765593 0.011329827 0.017935508 3.06E-07 6.514637198 -0.169210771 MDRT(ph)PPPPTLSPAAITVGR ddPTM_HeLa_CUDC101_4h_R1 3 MDRTPPPPTLSPAAITVGR 19 1 E7EX82;Q8NDX5-2;Q8NDX5;Q8NDX5-7;H7C4H9 E7EX82 PHC3 Polyhomeotic-like protein 3 1 0 MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR;MDRT(1)PPPPTLSPAAITVGR ;; 124.2 0.00086516 66726000 2275.92 2062.61 1715.76 1449.81 1959.72 1679.12 1648.76 1774.27 1999.2 1677.23 TRUE FALSE FALSE 2009.140108 2126.156569 1808.519175 1508.939518 1815.15536 1647.093584 1712.353225 1976.245725 1916.79213 1667.253761 1.205059574 1.275244728 1.084729402 0.905044903 1.088709711 0.987908153 1.02705015 1.185329894 1.149670299 1 10.70325799 -6.514417435 24.86811996 1.11611382 1.033778536 0.208426379 0.096202603 690.0537852 2028094.934 0.017867523 0.02600711 3.06E-07 6.514417435 -0.082335284 ESDTKNEVNGTSEDIKS(ph)EGDTQS(ph)N ddPTM_HeLa_CUDC101_4h_R1 2 ESDTKNEVNGTSEDIKSEGDTQSN 24 2 O95232 O95232 LUC7L3 Luc7-like protein 3 2 0 ESDTKNEVNGT(0.001)S(0.002)EDIKS(0.914)EGDT(0.175)QS(0.907)N;ESDTKNEVNGT(0.005)S(0.007)EDIKS(0.752)EGDT(0.259)QS(0.977)N ; 69.857 0.0046952 63389000 6020.3 4851.8 4671.6 4334.2 4672.6 5268.5 4391.9 4962.4 4649.7 4753.6 TRUE FALSE FALSE 5314.60956 5001.278207 4924.160827 4510.96741 4327.911607 5168.01214 4561.297054 5527.299557 4458.037398 4725.325376 1.124707642 1.058398694 1.042078679 0.954636359 0.915897057 1.093683869 0.965287402 1.169718298 0.943435011 1 12.20619796 -6.513635022 21.94118689 1.060009807 1.013462624 0 0.08217723 193.5966042 459526.8827 0.012218369 0.017861688 3.06E-07 6.513635022 -0.046547183 TT(ph)SPLEEEEREIK ddPTM_HeLa_CUDC101_4h_R1 1 TTSPLEEEEREIK 13 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 T(0.156)T(0.594)S(0.25)PLEEEEREIK 97.767 0.013037 22022000 2478 2159.2 2401.7 2608.2 3300.6 2537.2 2410.7 2518.8 2598.5 2504.6 TRUE FALSE FALSE 2187.532596 2225.722393 2531.543167 2714.57367 3057.121314 2488.807137 2503.681507 2805.530011 2491.38873 2489.702528 0.878632114 0.893971215 1.016805477 1.090320486 1.227906258 0.999640362 1.005614718 1.126853501 1.000677271 1 11.28175766 -6.513625464 3.818041568 0.937590276 1.086702241 0.490806831 0.070169557 0.155108014 5.004726823 0.012157747 0.018204754 3.06E-07 6.513625464 0.149111965 VGSAQPS(ph)PPDDLDAGGLAQR ddPTM_HeLa_CUDC101_4h_R1 1 VGSAQPSPPDDLDAGGLAQR 20 0 Q8N3D4;E9PIH6;H0YDZ9;A0A0U1RQH4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 VGS(0.256)AQPS(0.744)PPDDLDAGGLAQR 99.313 0.00084405 8859000 1822.3 1581.2 1485.2 1360.5 1639.2 1735.2 1391.2 1367.3 1431 1575.8 TRUE FALSE FALSE 1608.692756 1629.914898 1565.494404 1415.987071 1518.279482 1702.103951 1444.85905 1522.947905 1372.013574 1566.427072 1.026982223 1.040530343 0.99940459 0.90395978 0.969262795 1.08661551 0.922391522 0.972243096 0.875887297 1 10.61326189 -6.513506205 24.49052672 1.015409668 0.972252616 0 0.06380186 484.9297899 1267126.27 0.007141737 0.010436443 3.07E-07 6.513506205 -0.043157053 GTEPSPGGT(ph)PQPSRPVSPAGPPEGVPEEAQPPR ddPTM_HeLa_CUDC101_4h_R1 1 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 1 0 GT(0.002)EPS(0.142)PGGT(0.622)PQPS(0.031)RPVS(0.204)PAGPPEGVPEEAQPPR 70.151 7.93E-06 122130000 1111.3 1020.3 1070.9 1267.6 1448 1223.7 1319.6 969.4 1244.7 1079.6 TRUE FALSE FALSE 981.0350986 1051.734234 1128.796093 1319.298207 1341.183925 1200.359961 1370.497414 1079.752578 1193.392939 1073.178491 0.914139732 0.980017995 1.051825118 1.229337168 1.24973053 1.118509149 1.277045175 1.006125809 1.112017198 1 10.06767433 -6.513215111 3.020841514 0.959991885 1.182034837 0.440536878 0.088715062 0.112871339 2.102288213 0.011491555 0.017437616 3.07E-07 6.513215111 0.222042952 TEMDKS(ph)PFNS(ph)PSPQDSPR ddPTM_HeLa_CUDC101_4h_R1 1 TEMDKSPFNSPSPQDSPR 18 1 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 2 0 T(0.015)EMDKS(0.987)PFNS(0.581)PS(0.41)PQDS(0.007)PR 66.137 0.018293 30698000 4036.1 3875.4 3769.5 3955.1 4239.5 4368 3933.2 3524.9 4931.5 4283.3 TRUE FALSE FALSE 3562.994476 3994.796481 3973.290572 4116.406073 3926.760531 4284.687678 4084.904842 3926.160368 4728.221483 4257.822741 0.836811369 0.938225174 0.933174257 0.966786624 0.922246127 1.006309548 0.959388187 0.922105171 1.110478705 1 12.05590017 -6.512562824 2.663743352 0.921997505 0.956572993 0 0.073552652 0.694094966 9.909626677 0.010281617 0.015755503 3.07E-07 6.512562824 0.034575488 S(ph)SPSARPPDVPGQQPQAAK ddPTM_HeLa_CUDC101_4h_R1 2 SSPSARPPDVPGQQPQAAK 19 1 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 0 S(0.462)S(0.462)PS(0.076)ARPPDVPGQQPQAAK;S(0.496)S(0.496)PS(0.008)ARPPDVPGQQPQAAK ; 103.73 0.00045922 156770000 2250.9 2112.05 2159.8 2516.41 2352.19 2377.42 2228.96 2193.72 2756.22 2473.45 TRUE FALSE FALSE 1987.052914 2177.119757 2276.565321 2619.040077 2178.67363 2332.074675 2314.931734 2443.444217 2642.607445 2458.737809 0.808159742 0.885462349 0.925908127 1.065196975 0.886094329 0.948484489 0.941512236 0.993779901 1.074782124 1 11.26370218 -6.512414562 24.69861794 0.905110303 0.963619996 0 0.080952828 794.8718156 1876137.742 0.012746752 0.01870794 3.07E-07 6.512414562 0.058509693 TVIESSPES(ph)PVTITEPYR ddPTM_HeLa_CUDC101_4h_R1 1 TVIESSPESPVTITEPYR 18 0 Q8TEQ6 Q8TEQ6 GEMIN5 Gem-associated protein 5 1 0 TVIES(0.003)S(0.05)PES(0.929)PVT(0.014)IT(0.004)EPYR 76.341 0.012996 5463600 1019.4 735.34 690.14 494.6 587.95 682.69 881.49 691.76 675.32 619.44 TRUE FALSE FALSE 899.9074773 757.9949538 727.451056 514.7719258 544.5780999 669.6688257 915.4893646 770.5071622 647.4830238 615.7555433 1.461468739 1.230999805 1.18139587 0.836000474 0.884406329 1.087556309 1.486774053 1.251319896 1.051526098 1 9.2662139 -6.512326278 23.55397563 1.224091272 1.105715235 0.019707384 0.206119237 660.3432293 1473939.725 0.039189704 0.057565126 3.07E-07 6.512326278 -0.118376037 LSMWDRPDDLIGR ddPTM_HeLa_CUDC101_4h_R1 2 LSMWDRPDDLIGR 13 1 O14776;O14776-2;G3V220 O14776 TCERG1 Transcription elongation regulator 1 0 0 ; ; 124.21 0.0022075 28121000 3420.2 2769.9 2491.8 2940.4 3424.5 3002.9 2886.6 2941 3180.2 3397.9 FALSE FALSE TRUE 3019.289341 2855.237336 2626.514245 3060.322221 3171.881458 2945.624686 2997.937129 3275.791552 3049.11081 3377.68914 0.893892012 0.84532271 0.77760686 0.906040223 0.939068495 0.872082825 0.887570468 0.969832159 0.902720968 1 11.72182084 -8.859646489 0.881777566 0.995235429 0.88465095 0.090056606 0.056742933 0.417223373 0.629210263 0.026593634 0.010363543 1.38E-09 8.859646489 -0.110584479 LSS(ph)DSFAR ddPTM_HeLa_CUDC101_4h_R1 1 LSSDSFAR 8 0 A0A087WSV0;Q9HB09-3;Q9HB09 A0A087WSV0 BCL2L12 Bcl-2-like protein 12 1 0 LS(0.172)S(0.826)DS(0.002)FAR 160.82 0.00095927 14488000 3490.1 3229.7 2832 2413.8 2714.1 2754 2932.4 2904 2573.1 3072.5 TRUE FALSE FALSE 3080.995769 3329.203229 2985.106486 2512.245197 2513.88625 2701.472038 3045.50365 3234.579622 2467.035729 3054.224633 1.00876528 1.090032211 0.977369658 0.822547618 0.823084924 0.884503389 0.997144616 1.05905099 0.807745345 1 11.57659046 -6.511967555 24.79907879 1.011792228 0.913182236 0.039382152 0.096636875 481.6200396 1094631.962 0.011849371 0.017419986 3.08E-07 6.511967555 -0.098609992 AIS(ph)TPETPLTK ddPTM_HeLa_CUDC101_4h_R1 1 AISTPETPLTK 11 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 0 AIS(0.5)T(0.5)PETPLTK 163.45 7.49E-05 81463000 8856.4 7459.4 6362.9 5865 6288.4 5712.1 4212.2 5499.4 8188.2 8731 TRUE FALSE FALSE 7818.266217 7689.215272 6706.897621 6104.200051 5824.51726 5603.15121 4374.665965 6125.429467 7850.67893 8679.067624 0.900818677 0.88594946 0.772767066 0.703324402 0.671099421 0.64559368 0.504047918 0.70577045 0.904553262 1 13.08332435 -6.511786425 0.601800567 0.976093186 0.585764312 0.851597806 0.055307846 0.161468006 0.117946333 0.012252428 0.026548802 3.08E-07 6.511786425 -0.390328874 LSNLALVK(ac)PEK ddPTM_HeLa_CUDC101_4h_R1 2 LSNLALVKPEK 11 1 O14737;K7EQA1;O14737-2 O14737 PDCD5 Programmed cell death protein 5 0 1 ; LSNLALVK(1)PEK;LSNLALVK(1)PEK 91.313 0.021205 1306700 1373.05 346.9 522.16 393.23 1443.7 1111.428 1339.82 1143.87 1181.35 706.47 FALSE TRUE FALSE 1212.10316 357.5875778 550.389549 409.2676191 1337.201127 1090.229363 1391.497306 1274.083537 1132.654253 702.267885 1.725984039 0.509189706 0.783731623 0.582779916 1.904118294 1.552440865 1.981433775 1.814241494 1.612852128 1 9.455877651 -5.721404865 24.99459188 1.187244119 1.806470495 0.450722308 0.399892538 154.0862182 96199.29453 0.06748209 0.134962791 1.90E-06 5.721404865 0.619226376 S(ph)IHEVDISNLEAALR ddPTM_HeLa_CUDC101_4h_R1 5 SIHEVDISNLEAALR 15 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR;S(1)IHEVDISNLEAALR ;;;; 222.42 1.61E-32 54983200 5586.75 4957.45 4407.6 4009.46 5071.81 4809.81 3942.61 3682.32 5291.09 4610.22 TRUE FALSE FALSE 4931.879634 5110.183158 4645.888188 4172.983109 4697.672681 4718.070888 4094.677788 4101.500424 5072.989031 4582.798206 1.076172114 1.115079244 1.013766694 0.910575356 1.025066448 1.029517486 0.893488564 0.894977313 1.106963214 1 12.16201305 -6.511377473 24.09510206 1.043932898 0.956664492 0.486268532 0.056489991 309.7234263 648869.5406 0.009222428 0.013602649 3.08E-07 6.511377473 -0.087268406 LSPDGLEHR ddPTM_HeLa_CUDC101_4h_R1 1 LSPDGLEHR 9 0 Q5TCX8;Q5TCX8-3 Q5TCX8 MLK4 Mitogen-activated protein kinase kinase kinase MLK4 0 0 18.782 0.040384 21878000 5699.8 4187.8 1133.6 5676.6 2984 4950 3669.9 2005.2 157 185.03 FALSE FALSE TRUE 5031.678084 4316.821154 1194.885845 5908.116284 2763.876265 4855.586997 3811.449272 2233.463863 150.5283935 183.9294333 27.35656819 23.46998561 6.496436287 32.12164675 15.02682966 26.39918424 20.72234554 12.14304759 0.818402965 1 7.523008555 -9.407977409 1.081549963 0.758859111 21.07721777 0.533358071 7.27332987 0.32259746 0.662201904 5.058969888 1.223834316 3.91E-10 9.407977409 20.31835866 NGSLDSPGKQDT(ph)EEDEEEDEKDK ddPTM_HeLa_CUDC101_4h_R1 2 NGSLDSPGKQDTEEDEEEDEKDK 23 2 Q9Y266;A0A0A0MSU9;A0A0A0MSS4 Q9Y266 NUDC Nuclear migration protein nudC 1 0 NGSLDS(0.072)PGKQDT(0.927)EEDEEEDEKDK;NGSLDS(0.007)PGKQDT(0.993)EEDEEEDEKDK ; 118.02 1.75E-06 42270000 3533.27 2847.33 2750.98 2907.82 2829.67 2877.39 2384.58 2530.82 3206.4 3281.03 TRUE FALSE FALSE 3119.105447 2935.052862 2899.7063 3026.413468 2620.930882 2822.50858 2476.554049 2818.918319 3074.230835 3261.514288 0.956336588 0.899904953 0.889067483 0.927916667 0.803593255 0.865398196 0.759326445 0.8642974 0.942577761 1 11.67132623 -6.511138985 0.434237856 0.997732999 0.796682787 0.648883132 0.040450939 0.366555184 0.144621777 0.012577837 0.029522667 3.08E-07 6.511138985 -0.201050212 GDAAS(ph)SPAPAASVGSSQGGAR ddPTM_HeLa_CUDC101_4h_R1 3 GDAASSPAPAASVGSSQGGAR 21 0 F8WCC1;E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2 F8WCC1 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 0 GDAAS(0.5)S(0.5)PAPAASVGSSQGGAR;GDAAS(0.5)S(0.5)PAPAASVGSSQGGAR;GDAAS(0.5)S(0.5)PAPAASVGSSQGGAR ;; 305.85 1.47E-146 181039000 11366.7 9647.8 8629.1 7725.8 10126.6 9078 8354.2 6525.4 9354.9 9067.1 TRUE FALSE FALSE 10034.31266 9945.037283 9095.615248 8040.891518 9379.580893 8904.852275 8676.424292 7268.225159 8969.287062 9013.168486 1.113294695 1.103389701 1.009147367 0.892127062 1.040653008 0.987982449 0.962638644 0.806400676 0.99513141 1 13.13781864 -6.510913732 7.690039867 1.058682182 0.947962127 0.387428234 0.067847317 0.13239834 49.88333404 0.011177373 0.016509334 3.08E-07 6.510913732 -0.110720055 SSS(ph)PAELDLKDDLQQTQGK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPAELDLKDDLQQTQGK 19 1 H7C1F9;Q2PPJ7-3;Q2PPJ7-2;Q2PPJ7 H7C1F9 RALGAPA2 Ral GTPase-activating protein subunit alpha-2 1 0 S(0.168)S(0.168)S(0.645)PAELDLKDDLQQT(0.019)QGK 68.676 0.0082965 6345600 1188.2 669.69 909.68 1124 1109.3 1016.6 933.22 933.72 843.76 850.86 TRUE FALSE FALSE 1048.920997 690.3223551 958.8600524 1169.841578 1027.469149 997.2100488 969.214608 1040.010911 808.9798557 845.7990469 1.240153913 0.816177741 1.133673602 1.383120001 1.214791093 1.179015338 1.145915938 1.229619393 0.956468157 1 9.724171124 -6.510451035 24.94098204 1.088598935 1.225695069 0.354197006 0.124880401 753.4733704 1512135.542 0.020979499 0.031058186 3.09E-07 6.510451035 0.137096134 QATVSWDSGGSDEAPPKPS(ph)RPGYPSPR ddPTM_HeLa_CUDC101_4h_R1 1 QATVSWDSGGSDEAPPKPSRPGYPSPR 27 2 Q05397-5;Q05397;Q05397-7;Q05397-2;E7ESA6;H0YBP1;H0YB16;H0YBZ1;E9PEI4;Q05397-6;B4DWJ1;E5RHK7;E5RG80;E5RJQ2 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 QATVSWDSGGSDEAPPKPS(0.512)RPGY(0.427)PS(0.061)PR 68.158 0.00013131 27344000 2685 2405.4 2226.6 2174 2334.6 2619.9 2397.5 1827 2469.5 2340.6 TRUE FALSE FALSE 2370.26837 2479.507523 2346.976731 2262.665117 2162.381209 2569.929773 2489.972378 2034.978295 2367.706165 2326.678007 1.018735022 1.065685718 1.008724337 0.972487431 0.929385675 1.10454896 1.070183485 0.874628242 1.017633793 1 11.18405585 -6.509967181 23.97963133 1.014492796 0.996951563 0.049072866 0.063186526 1697.835649 3153257.862 0.009632522 0.014289223 3.09E-07 6.509967181 -0.017541234 DFQDYMEPEEGCQGS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 9 DFQDYMEPEEGCQGSPQR 18 0 O43237;O43237-2;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDY(0.023)MEPEEGCQGS(0.977)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR;DFQDYMEPEEGCQGS(1)PQR ;;;;;;;; 180.1 4.80E-17 159321300 18940.16 15426.81 14541.21 13866.14 15373.45 15759.56 13624.73 14044.08 16768.81 14982.19 TRUE FALSE FALSE 16720.02316 15902.09173 15327.3518 14431.66112 14239.38122 15458.97265 14150.2404 15642.8013 16077.59255 14893.07527 1.122670963 1.067750713 1.029159628 0.969018209 0.956107517 1.037997349 0.95012213 1.050340579 1.079534768 1 13.86235407 -6.50984797 4.223557305 1.060066918 0.99106463 0.415708502 0.041351541 0.216639674 9.141619066 0.008361452 0.012493628 3.09E-07 6.50984797 -0.069002288 EAVVDLHADDS(ph)RISEDETER ddPTM_HeLa_CUDC101_4h_R1 2 EAVVDLHADDSRISEDETER 20 1 Q9UKV3-5 Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 EAVVDLHADDS(0.499)RIS(0.499)EDET(0.001)ER;EAVVDLHADDS(0.495)RIS(0.495)EDET(0.011)ER ; 124.45 1.23E-05 141418000 5518.3 4620.2 4470.7 4454.7 4091.3 3974.3 3979.7 3528.7 5286.7 5486.8 TRUE FALSE FALSE 4871.453239 4762.542886 4712.399565 4636.381921 3789.49295 3898.496849 4133.198362 3930.392945 5068.779988 5454.16427 0.893162178 0.873193885 0.8640003 0.850062758 0.694788929 0.714774374 0.757805991 0.7206224 0.929341277 1 12.41314244 -6.509739992 0.315122503 1.00419428 0.660380176 0.839289719 0.039056403 0.462823256 0.105129059 0.026063147 0.059846284 3.09E-07 6.509739992 -0.343814104 YFGTDAVPDGS(ph)DEEEVAYTG ddPTM_HeLa_CUDC101_4h_R1 2 YFGTDAVPDGSDEEEVAYTG 20 0 Q9NWZ5;Q9NWZ5-4 Q9NWZ5;Q9NWZ5-4 UCKL1 Uridine-cytidine kinase-like 1 1 0 YFGT(0.001)DAVPDGS(0.997)DEEEVAYT(0.002)G;YFGTDAVPDGS(0.682)DEEEVAY(0.196)T(0.123)G ; 103.6 0.00042816 50240000 16526.7 14807.8 13851.2 13102.3 15560.2 14162.1 13897.1 12598.2 15055.8 15274.4 TRUE FALSE FALSE 14589.46528 15264.01077 14600.03777 13636.66843 14412.35505 13891.98154 14433.1158 14032.32816 14435.19355 15183.54719 0.960873312 1.005299393 0.961569625 0.898121385 0.949208697 0.914936501 0.950576016 0.924179837 0.950712859 1 13.89022125 -6.509350885 13.44197796 0.982822092 0.929271401 0.579168832 0.02089541 0.767472119 761.3010791 0.003091677 0.004579976 3.09E-07 6.509350885 -0.053550691 SSQPSPT(ph)AVPAS(ph)DSPPTK ddPTM_HeLa_CUDC101_4h_R1 1 SSQPSPTAVPASDSPPTK 18 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 S(0.008)S(0.01)QPS(0.363)PT(0.618)AVPAS(0.725)DS(0.26)PPT(0.014)K 103.73 0.0045935 21761000 3148 2646.3 2609.9 2535.7 2508 2529.4 2227.2 2486.7 2547.4 2941.3 TRUE FALSE FALSE 2778.996212 2727.829366 2750.999089 2639.116806 2322.989837 2481.155909 2313.10385 2769.775876 2442.395094 2923.805017 0.950472482 0.932972394 0.940896904 0.902630918 0.794509149 0.848605121 0.791127943 0.947318942 0.835348144 1 11.51363139 -6.50931119 0.871090685 0.980211607 0.841226305 0.128774947 0.064018218 0.262458228 0.397664358 0.008628687 0.016352238 3.10E-07 6.50931119 -0.138985302 LNLGTDSDSS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 4 LNLGTDSDSSPQK 13 0 Q16512;Q16512-2;K7EN76;Q16512-3 Q16512 PKN1 Serine/threonine-protein kinase N1 1 0 LNLGTDS(0.007)DS(0.329)S(0.664)PQK;LNLGTDSDS(0.022)S(0.978)PQK;LNLGTDSDS(0.021)S(0.979)PQK;LNLGTDS(0.001)DS(0.01)S(0.989)PQK ;;; 210.07 9.71E-24 458311000 28158.1 25317.7 22655.3 21190.8 25120.3 22269.8 21419 23335.9 24463.4 23524.7 TRUE FALSE FALSE 24857.4502 26097.70833 23880.11405 22055.05242 23267.22552 21845.04067 22245.138 25992.36453 23455.0083 23384.77404 1.062975856 1.11601285 1.021182159 0.94313729 0.994973288 0.934156586 0.951265895 1.111508047 1.003003418 1 14.51328187 -6.508653893 24.46660738 1.03854283 0.982491921 0.191973925 0.055685077 669.3522541 1151279.841 0.008748658 0.013041343 3.10E-07 6.508653893 -0.056050909 DLQSPDFT(ph)TGFHSDKIEAK ddPTM_HeLa_CUDC101_4h_R1 2 DLQSPDFTTGFHSDKIEAK 19 1 E9PDR5;E7EPI0;Q9P2D0-2;Q9P2D0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 0 DLQS(0.007)PDFT(0.968)T(0.025)GFHSDKIEAK;DLQS(0.023)PDFT(0.935)T(0.042)GFHSDKIEAK ; 133.16 5.00E-05 127961000 4276.4 3732.9 3471.3 3168.9 4213.7 3361.9 3251.8 3147.8 3708.9 3705 TRUE FALSE FALSE 3775.126875 3847.906224 3658.968978 3298.141439 3902.863746 3297.777359 3377.223015 3506.132828 3556.017572 3682.962495 1.025024523 1.044785612 0.993485267 0.895513175 1.059707708 0.89541432 0.916985448 0.951987112 0.965531845 1 11.84665099 -6.508070322 23.44580389 1.014834982 0.94599645 0.298111429 0.04750435 245.407545 388547.5148 0.006602244 0.00986227 3.10E-07 6.508070322 -0.068838533 GLNGCES(ph)PDADDYFEHSPLSEDR ddPTM_HeLa_CUDC101_4h_R1 2 GLNGCESPDADDYFEHSPLSEDR 23 0 Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 GLNGCES(1)PDADDYFEHSPLSEDR;GLNGCES(0.723)PDADDY(0.277)FEHSPLSEDR ; 136.83 1.26E-07 17428000 1967.81 1882.01 1903.57 2405.4 2211.09 1753.97 1581.23 2712.8 2178.37 2171.01 TRUE FALSE FALSE 1737.146295 1939.992497 2006.482752 2503.502609 2047.982296 1720.515945 1642.218571 3021.614186 2088.576667 2158.096736 0.804943664 0.898936765 0.929746438 1.160051154 0.948976133 0.797237638 0.760956885 1.400129168 0.967786398 1 11.07554382 -6.506959264 24.35751326 0.90510664 0.989951047 0.055783487 0.176476643 1396.69941 2137012.13 0.027353961 0.041020137 3.11E-07 6.506959264 0.084844407 LVTYYSCS(ph)YWK ddPTM_HeLa_CUDC101_4h_R1 2 LVTYYSCSYWK 11 0 D6RFZ2;J3KN75;Q0IIM8-2;Q0IIM8-3;Q0IIM8 D6RFZ2 TBC1D8B TBC1 domain family member 8B 1 0 LVTY(0.003)Y(0.003)S(0.024)CS(0.606)Y(0.365)WK;LVTYYS(0.001)CS(0.642)Y(0.358)WK ; 113.71 0.0059286 56727000 2557.19 2360.48 2195.16 1945.96 2441.19 2541.8 2176.31 2009.86 2524.91 2403.63 TRUE FALSE FALSE 2257.440065 2433.203591 2313.83699 2025.32466 2261.108277 2493.3194 2260.251006 2238.654338 2420.832141 2389.333102 0.944799226 1.018360977 0.968402852 0.847652702 0.946334471 1.043521055 0.94597568 0.936936895 1.013183193 1 11.22239228 -6.506629936 24.97043068 0.977338879 0.945657463 0.15680235 0.04878402 1502.553011 2309056.477 0.00782953 0.011756825 3.11E-07 6.506629936 -0.031681416 RFS(ph)LSVPR ddPTM_HeLa_CUDC101_4h_R1 1 RFSLSVPR 8 1 D6R9B0;A0A0A0MSJ6;Q07002;Q07002-3;D6R9X1 D6R9B0 CDK18 Cyclin-dependent kinase 18 1 0 RFS(0.978)LS(0.022)VPR 69.65 0.035137 5333200 1545.9 1503 1453 1865.4 2435.2 1834.6 1743.1 1702.2 1395.1 1345.4 TRUE FALSE FALSE 1364.691945 1549.305649 1531.553575 1941.479075 2255.560148 1799.608062 1810.331951 1895.971567 1337.593388 1337.397501 1.020408625 1.158448141 1.145174545 1.45168439 1.686529357 1.345604475 1.35362295 1.417657477 1.000146468 1 10.38521261 -6.506525937 1.868174614 1.015774845 1.453541468 0.793528595 0.099095018 0.108167411 0.753493752 0.016802509 0.026834521 3.12E-07 6.506525937 0.437766623 EGKPEIEGKPES(ph)EGEPGSETR ddPTM_HeLa_CUDC101_4h_R1 1 EGKPEIEGKPESEGEPGSETR 21 2 D6RD44;Q96EI5;Q96EI5-2 D6RD44 TCEAL4 Transcription elongation factor A protein-like 4 1 0 EGKPEIEGKPES(0.803)EGEPGS(0.098)ET(0.098)R 52.19 0.036207 18309000 1544.1 1640.6 1376.8 1136.7 1635.1 1152.9 1213 1578.4 1675.8 1575.5 TRUE FALSE FALSE 1363.102939 1691.144941 1451.233973 1183.059539 1514.481931 1130.910353 1259.785816 1758.078676 1606.722815 1566.128856 0.870364487 1.079824904 0.926637656 0.755403704 0.967022557 0.722105559 0.804394742 1.122563236 1.025919935 1 10.6129872 -6.50588523 24.67158255 0.950297571 0.864501678 0.141250841 0.120105731 1103.395611 1601935.87 0.01793375 0.026984034 3.12E-07 6.50588523 -0.085795893 GIAPAS(ph)PMLGNASNPNKADIPER ddPTM_HeLa_CUDC101_4h_R1 2 GIAPASPMLGNASNPNKADIPER 23 1 J3KNR0;P27448-8;P27448-6;P27448-3;P27448-4;P27448-2;P27448;P27448-7;H0YIY6;H0YKP9 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 0 GIAPAS(0.999)PMLGNAS(0.001)NPNKADIPER;GIAPAS(0.999)PMLGNAS(0.001)NPNKADIPER ; 83.167 0.00024709 86429000 4318.1 3972.3 3982.2 3978.9 4360.2 4353.1 4207.5 3976.7 3396.6 3657 TRUE FALSE FALSE 3811.938864 4094.681855 4197.489777 4141.17674 4038.556733 4270.07187 4369.784684 4429.391454 3256.59071 3635.248001 1.048604899 1.126383084 1.154663939 1.139173101 1.110943939 1.17463014 1.20205958 1.218456472 0.895837288 1 11.82783807 -6.505580266 0.290142452 0.981808103 1.249730703 0.817775987 0.040312101 0.511862747 0.1017299 0.02244258 0.050603473 3.12E-07 6.505580266 0.2679226 TMFAQVES(ph)DDEEAK ddPTM_HeLa_CUDC101_4h_R1 2 TMFAQVESDDEEAK 14 0 Q9NW82 Q9NW82 WDR70 WD repeat-containing protein 70 1 0 TMFAQVES(1)DDEEAK;TMFAQVES(1)DDEEAK ; 184.99 5.91E-11 42099000 10059.3 8176 7117.1 7429.8 6875.7 7823.7 6584.7 5884.4 9124.9 8496.7 TRUE FALSE FALSE 8880.164103 8427.892869 7501.871954 7732.819358 6368.493309 7674.475958 6838.674085 6554.25631 8748.76776 8446.161251 1.051384628 0.997837079 0.888198997 0.915542473 0.754010387 0.90863479 0.809678371 0.776004165 1.035827697 1 13.04408008 -6.505365209 1.374659705 1.025139059 0.822058919 0.786052263 0.047252015 0.130328568 0.491523613 0.007984588 0.01342427 3.12E-07 6.505365209 -0.203080141 ATPGAPALTSMT(ph)PTAVER ddPTM_HeLa_CUDC101_4h_R1 1 ATPGAPALTSMTPTAVER 18 0 P54198;P54198-2 P54198 HIRA Protein HIRA 1 0 ATPGAPALT(0.061)S(0.266)MT(0.66)PT(0.013)AVER 99.813 0.011001 10451000 1098.7 866.7 964.09 1243.1 1417.8 1128.4 1090.1 712.33 1086 990.2 TRUE FALSE FALSE 969.9120515 893.4019997 1016.211622 1293.798991 1313.211719 1106.87765 1132.145522 793.4187679 1041.23462 984.3102464 0.9853723 0.90764269 1.032409878 1.314421948 1.334144111 1.124521109 1.150191747 0.806065741 1.05783174 1 9.942969302 -6.505247004 24.20216351 0.98570671 1.157186154 0.227751279 0.13854209 512.6613073 703703.2046 0.0209412 0.03155268 3.12E-07 6.505247004 0.171479444 ELSDQATAS(ph)PIVAR ddPTM_HeLa_CUDC101_4h_R1 2 ELSDQATASPIVAR 14 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 ELSDQATAS(1)PIVAR;ELSDQATAS(1)PIVAR ; 223.14 9.41E-33 290000000 6387 4939 4694.1 4282.6 4908.2 4750.6 4178.2 3476.2 4843.4 5315.1 TRUE FALSE FALSE 5638.325542 5091.164736 4947.877245 4457.262939 4546.131865 4659.99022 4339.354574 3871.916557 4643.753002 5283.485549 1.067160209 0.963599633 0.936479754 0.843621677 0.860441809 0.881991666 0.821305279 0.732833755 0.878918464 1 12.36727428 -6.50517281 1.238656695 1.03167559 0.822569826 0.522759883 0.062917915 0.13395948 0.410166196 0.007996197 0.013745943 3.12E-07 6.50517281 -0.209105764 AIPTVNHSGTFS(ph)PQAPVPTTVPVVDVR ddPTM_HeLa_CUDC101_4h_R1 2 AIPTVNHSGTFSPQAPVPTTVPVVDVR 27 0 Q16513-3;Q16513-2;Q16513;Q16513-4;B1AL79;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 AIPTVNHS(0.001)GT(0.118)FS(0.881)PQAPVPTTVPVVDVR;AIPTVNHSGT(0.002)FS(0.998)PQAPVPTTVPVVDVR ; 135.37 1.17E-11 162947000 2885.5 2333.72 2370.91 1923.52 2678.8 2213.3 2263.83 860.65 2471.55 2420.8 TRUE FALSE FALSE 2547.266064 2405.619147 2499.088566 2001.96946 2481.190261 2171.08499 2351.146681 958.6229171 2369.671663 2406.400974 1.058537663 0.999675105 1.038517102 0.83193511 1.031079312 0.90221248 0.977038618 0.39836375 0.984736828 1 11.23266134 -4.251235373 4.167217746 1.004939235 0.343268268 0.867493924 0.067700444 0.060135641 2.266472022 0.00964165 0.119546341 5.61E-05 4.251235373 -0.661670967 down IGEGTY(ph)GVVYK ddPTM_HeLa_CUDC101_4h_R1 5 IGEGTYGVVYK 11 0 A0A087WZZ9;P06493;E5RIU6;A0A024QZP7;P06493-2;K7ELV5;G3V5T9;P24941;G3V317;E7ESI2;P24941-2;Q00526 A0A087WZZ9;G3V5T9 CDK1;CDC2;CDK3;CDK2 Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 1 0 IGEGT(0.024)Y(0.976)GVVYK;IGEGT(0.002)Y(0.998)GVVYK;IGEGT(0.001)Y(0.999)GVVYK;IGEGT(0.002)Y(0.998)GVVYK;IGEGT(0.015)Y(0.985)GVVYK ;;;; 176.38 2.17E-06 6641233000 15538.6 12681.3 11679.5 10893.3 12349.5 10725.5 11288.9 12088 13295.5 12150 TRUE FALSE FALSE 13717.18886 13071.99582 12310.9291 11337.57586 11438.50199 10520.92896 11724.31665 13464.04906 12747.45386 12077.73126 1.135742183 1.08232213 1.019308083 0.938717348 0.94707373 0.871101429 0.970738328 1.114782965 1.055451027 1 13.56006186 -6.504572205 3.942154752 1.067016169 0.962491675 0.342623095 0.064875466 0.215408915 7.471245427 0.011982092 0.01799573 3.13E-07 6.504572205 -0.104524494 ASSLSESS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 4 ASSLSESSPPK 11 0 Q9UHB6-4;Q9UHB6-5;Q9UHB6;F8VQE1;Q9UHB6-2;F8VS07;Q9UHB6-3;F8VRN8 Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 1 0 ASSLS(0.001)ES(0.059)S(0.94)PPK;ASSLS(0.016)ES(0.103)S(0.881)PPK;ASSLS(0.002)ES(0.131)S(0.867)PPK;ASSLSES(0.072)S(0.928)PPK ;;; 170.04 9.04E-07 1788246600 13837.6 12881.2 11863.4 11299.8 12510 12868.3 11447.6 11752.1 14079.6 12959.2 TRUE FALSE FALSE 12215.5775 13278.0545 12504.77129 11760.65469 11587.16222 12622.85862 11889.13777 13089.91156 13499.23293 12882.1181 0.948258462 1.030735349 0.970707704 0.912944175 0.899476478 0.979874468 0.92291793 1.01613038 1.047904764 1 13.6530822 -6.50417254 24.37678113 0.980054794 0.943997548 0.221618309 0.042967478 763.8615578 995417.0838 0.005910125 0.00892601 3.13E-07 6.50417254 -0.036057246 TLYSFFS(ph)PSPAR ddPTM_HeLa_CUDC101_4h_R1 2 TLYSFFSPSPAR 12 0 P13051 P13051 UNG Uracil-DNA glycosylase 1 0 TLYSFFS(0.999)PS(0.001)PAR;TLYSFFS(0.999)PSPAR ; 185.2 1.09E-10 59797000 4114.2 3307.4 3063.1 2494.6 3035.1 2448.1 2477.8 2062.26 3566.1 3944.3 TRUE FALSE FALSE 3631.939713 3409.297074 3228.700451 2596.340571 2811.20672 2401.406571 2573.369576 2297.019342 3419.103849 3920.839128 0.926316942 0.869532506 0.823471799 0.662190028 0.71699109 0.612472609 0.656331334 0.585848913 0.872033699 1 11.93694673 -6.503273789 0.649208163 0.982855076 0.603347998 0.883590149 0.046598004 0.09281933 0.078528278 0.007084833 0.015042158 3.14E-07 6.503273789 -0.379507078 VISVMLYRNY(ph)LRSMRR ddPTM_HeLa_CUDC101_4h_R1 1 VISVMLYRNYLRSMRR 16 3 Q14330 Q14330 GPR18 N-arachidonyl glycine receptor 1 0 VISVMLYRNY(0.999)LRSMRR 56.599 0.02523 168550000 2563.4 5008.6 3329.7 5292.9 8695.1 7993.7 7342.1 3870.3 6656.3 2569.4 TRUE FALSE FALSE 2262.922138 5162.909029 3509.713654 5508.76734 8053.679796 7841.233491 7625.287256 4310.879308 6381.924497 2554.117095 0.885989974 2.021406552 1.374139683 2.156818633 3.153214789 3.070036808 2.985488517 1.687815847 2.498681251 1 11.31860895 -6.502503199 1.070080134 0.954381355 2.761922168 0.258861531 0.687664905 0.182303178 0.416522557 0.086935518 0.155258203 3.14E-07 6.502503199 1.807540813 SCVEEPEPEPEAAEGDGDKKGNAEGSS(ph)DEEGK ddPTM_HeLa_CUDC101_4h_R1 1 SCVEEPEPEPEAAEGDGDKKGNAEGSSDEEGK 32 2 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 SCVEEPEPEPEAAEGDGDKKGNAEGS(0.463)S(0.537)DEEGK 47.429 0.010587 12828000 3197.7 2522.9 2392 2207.6 2616.5 2587.3 2273.3 2038.7 3015.4 2422.5 TRUE FALSE FALSE 2822.870453 2600.627559 2521.318755 2297.63547 2423.486008 2537.951563 2360.981943 2270.777367 2891.103936 2408.090862 1.172244161 1.079954083 1.047019776 0.954131551 1.006393092 1.053926828 0.980437233 0.942978275 1.200579256 1 11.23367411 -6.502295476 4.048427303 1.083116315 0.99198042 0.459724826 0.060628363 0.223816141 8.292504368 0.011007039 0.016534268 3.15E-07 6.502295476 -0.091135896 AFMGT(ph)PVQK ddPTM_HeLa_CUDC101_4h_R1 2 AFMGTPVQK 9 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AFMGT(1)PVQK;AFMGT(1)PVQK ; 126.19 0.0203 174410000 10448.7 8894.6 10693.9 10596.1 9883.2 9097.6 7515 2384.37 9450.8 10851 TRUE FALSE FALSE 9223.919225 9168.632083 11272.04458 11028.25476 9154.136026 8924.078438 7804.856067 2655.797043 9061.234024 10786.45777 0.855138862 0.850013255 1.045018191 1.022416719 0.848669343 0.82734097 0.723579161 0.246215866 0.840056506 1 13.39693355 -4.250374798 1.448108995 0.933019279 1.34E-21 0.874962092 0.07630073 0.321070757 0.584264884 0.011930825 0.434642465 5.62E-05 4.250374798 -0.933019279 down LDLTENLTGS(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 LDLTENLTGSK 11 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLTENLT(0.003)GS(0.997)K;LDLTENLT(0.029)GS(0.971)K ; 147.52 0.00088327 33042000 4408.6 3795.1 3881.4 3632.3 3603 4149 3355.82 1458.14 3038.29 4149.8 TRUE FALSE FALSE 3891.830591 3912.022533 4091.240225 3780.440894 3337.213868 4069.864738 3485.255102 1624.128764 2913.0504 4125.116805 0.943447368 0.948342245 0.991787728 0.916444569 0.808998636 0.986605939 0.844886404 0.393717036 0.70617404 1 12.01021926 -4.250312934 2.543468557 0.957407553 0.262863641 0.709337825 0.095611418 0.115562954 0.914822435 0.00801602 0.174053573 5.62E-05 4.250312934 -0.694543912 down GLTLAPGLS(ph)PARPLFGSDFEK ddPTM_HeLa_CUDC101_4h_R1 2 GLTLAPGLSPARPLFGSDFEK 21 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 GLTLAPGLS(0.997)PARPLFGS(0.003)DFEK;GLT(0.003)LAPGLS(0.992)PARPLFGS(0.005)DFEK ; 64.331 0.0065191 73701000 9453.2 6299.8 6676.1 5934.9 5647.6 5129.5 5570.9 4145.8 7636.8 8113.8 TRUE FALSE FALSE 8345.110226 6493.889371 7037.03016 6176.950875 5230.9878 5031.663334 5785.771479 4617.741114 7322.007872 8065.538757 1.034662467 0.805140186 0.872481104 0.765844795 0.648560246 0.623847146 0.7173447 0.572527298 0.90781386 1 12.97755519 -6.500760837 0.853800584 1.019418632 0.63220745 0.810608275 0.065337938 0.121253071 0.176476231 0.010949822 0.021020399 3.16E-07 6.500760837 -0.387211182 SYS(ph)PDGKESPSDK ddPTM_HeLa_CUDC101_4h_R1 1 SYSPDGKESPSDK 13 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 S(0.001)YS(0.998)PDGKESPSDK 150.22 5.50E-07 0 1024.5 1185.7 1012.1 1253.8 1567.2 1432.6 1006.8 1236.5 1088.3 1129 TRUE FALSE FALSE 904.409663 1222.230012 1066.817187 1304.935383 1451.590778 1405.275542 1045.632613 1377.258162 1043.439813 1122.284658 0.805864766 1.089055262 0.950576291 1.162749018 1.293424773 1.252156066 0.931699998 1.227191473 0.929746126 1 10.13222293 -6.50050819 1.680971862 0.914852 1.170863848 0.458798389 0.114954553 0.245170564 1.381587194 0.021036307 0.0342081 3.16E-07 6.50050819 0.256011848 QSSLAEPVS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 QSSLAEPVSPSK 12 0 E7EMD6;O43572 E7EMD6 AKAP10 "A-kinase anchor protein 10, mitochondrial" 1 0 QSSLAEPVS(0.948)PS(0.052)K 148.18 0.00077229 25254000 5989.4 4807.9 4681.5 4625.7 5341.3 5260.6 4383.2 4310.7 5669.5 4716.4 TRUE FALSE FALSE 5287.331611 4956.0257 4934.596051 4814.35604 4947.28294 5160.26282 4552.261492 4801.412664 5435.80081 4688.346643 1.127760384 1.057094553 1.05252372 1.02687715 1.055229768 1.100657271 0.970973744 1.024116395 1.159428094 1 12.19486353 -6.49946798 3.618747186 1.061652603 1.036712555 0.109553082 0.051739897 0.703069488 19.54310731 0.008833246 0.013342193 3.17E-07 6.49946798 -0.024940048 TTAGS(ph)VDWTDQLGLR ddPTM_HeLa_CUDC101_4h_R1 2 TTAGSVDWTDQLGLR 15 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 TT(0.002)AGS(0.997)VDWT(0.001)DQLGLR;T(0.367)T(0.006)AGS(0.55)VDWT(0.077)DQLGLR ; 132.23 0.00062867 15421200 2614.6 2176.7 2056.82 1800.87 2268.82 1956.93 2054.54 1856.88 2226.8 2121.85 TRUE FALSE FALSE 2308.120551 2243.761547 2168.017911 1874.317263 2101.453669 1919.604821 2133.784296 2068.259713 2135.010361 2109.229142 1.094295781 1.063782736 1.027872158 0.888626667 0.996313595 0.910097809 1.011641767 0.980576113 1.012223053 1 11.04250012 -6.497211178 21.34027521 1.04715066 0.959815916 0.48588504 0.042345242 84.50595015 70258.67489 0.007310401 0.011124019 3.18E-07 6.497211178 -0.087334744 GSSEQAES(ph)DNMDVPPEDDSKEGAGEQK ddPTM_HeLa_CUDC101_4h_R1 2 GSSEQAESDNMDVPPEDDSKEGAGEQK 27 1 Q12906-7;Q12906-4;Q12906-6;Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7ER69;K7EM82;K7EJ09 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 GS(0.031)S(0.029)EQAES(0.939)DNMDVPPEDDS(0.001)KEGAGEQK;GSSEQAES(1)DNMDVPPEDDSKEGAGEQK ; 128.52 3.60E-11 15377000 3640.9 2483.49 2472.63 2420.4 1754.32 2586.57 2269.98 2288.54 2184.71 2505.13 TRUE FALSE FALSE 3214.119221 2560.003383 2606.307857 2519.114374 1624.907309 2537.235487 2357.533889 2549.058143 2094.655329 2490.229375 1.290692035 1.028019109 1.04661357 1.011599332 0.652513108 1.018876218 0.946713549 1.023623835 0.841149554 1 11.28206292 -6.495579798 1.851318211 1.134169949 0.920182951 0 0.15348641 0.320212524 2.186688704 0.024138111 0.038771768 3.19E-07 6.495579798 -0.213986997 LQDSSDPDTGSEEEGSSRLS(ph)PPHSPR ddPTM_HeLa_CUDC101_4h_R1 2 LQDSSDPDTGSEEEGSSRLSPPHSPR 26 1 Q92974-2;Q92974;V9GYM8;A0A5F9ZI21;Q92974-3;V9GYF0 Q92974-2 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 LQDSS(0.001)DPDT(0.034)GS(0.087)EEEGS(0.162)S(0.162)RLS(0.512)PPHS(0.042)PR;LQDSSDPDT(0.005)GS(0.021)EEEGS(0.169)S(0.169)RLS(0.592)PPHS(0.045)PR ; 56.335 0.0029257 44478000 4193.5 3597.1 3504.3 3140.5 3822.1 3553.8 3168.3 3939.5 4146.7 3760.3 TRUE FALSE FALSE 3701.944287 3707.922387 3693.753058 3268.583164 3540.151298 3486.017186 3290.502392 4387.956756 3975.771271 3737.933568 0.990371878 0.991971184 0.988180499 0.874435863 0.947087805 0.932605442 0.880299859 1.173899074 1.063628125 1 11.86802521 -6.493519571 24.90642284 0.994827606 0.952379681 0.057409767 0.080962265 1462.949498 1241072.31 0.010993178 0.016773594 3.21E-07 6.493519571 -0.042447926 HAS(ph)APSHVQPSDSEKNR ddPTM_HeLa_CUDC101_4h_R1 2 HASAPSHVQPSDSEKNR 17 1 A0A3B3IRT3;O60343-2;O60343-3;O60343 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 0 HAS(0.865)APS(0.135)HVQPSDSEKNR;HAS(0.985)APS(0.015)HVQPSDSEKNR ; 77.899 0.0070941 13997200 2847.6 3845.5 3555 3486.9 10905.9 5169.9 6012.2 5771.6 4741 1681.96 TRUE FALSE FALSE 2513.808645 3963.975297 3747.194053 3629.110854 10101.39348 5071.292771 6244.092568 6428.615614 4545.573973 1671.955627 1.503513971 2.370861542 2.241204248 2.17057845 6.041663619 3.033150335 3.734604236 3.844967839 2.718716872 1 10.70732084 -6.492779509 0.936541455 1.203106554 4.013687841 0.441865265 1.010768954 0.237849126 0.41624802 0.163562475 0.30591559 3.22E-07 6.492779509 2.810581287 LSSLIILMPHHVEPLER ddPTM_HeLa_CUDC101_4h_R1 2 LSSLIILMPHHVEPLER 17 0 P50454;E9PR70;E9PPV6;E9PKH2 P50454 SERPINH1 Serpin H1 0 0 ; ; 105.39 0.0012046 7607930 8932.09 8104.16 7037.42 6958.75 9469.95 8492.14 8435.95 6973.18 7589.68 7102.76 FALSE FALSE TRUE 7885.08395 8353.839564 7417.884212 7242.557903 8771.370655 8330.166578 8761.327417 7766.978625 7276.830178 7060.512468 1.11678635 1.18317751 1.050615553 1.025783601 1.242313599 1.17982464 1.240891147 1.100058765 1.030637678 1 12.78555719 -13.52287868 0.104549539 0.490453951 1.25001375 0.391659311 0.06688634 77.47956571 0.60034025 8.474781094 0.501937763 3.00E-14 13.52287868 0.759559799 DVTT(ph)ANLERFMRR ddPTM_HeLa_CUDC101_4h_R1 1 DVTTANLERFMRR 13 2 H0YHS2;F8VRX1;O95398-3;O95398 H0YHS2 RAPGEF3 Rap guanine nucleotide exchange factor 3 1 0 DVT(0.384)T(0.616)ANLERFMRR 83.998 0.032896 37241000 635.7 847.06 590.74 1228.1 1603 1386.3 1417.6 698.34 1159.3 442.58 TRUE FALSE FALSE 561.1842097 873.1569146 622.6771913 1278.187226 1484.749884 1359.858637 1472.277307 777.8362028 1111.513163 439.9475145 1.275570815 1.984684277 1.415344264 2.90531753 3.374834122 3.090956518 3.346483975 1.768020451 2.526467651 1 8.781187611 -6.49252984 1.336680943 1.144900262 2.987002298 0.374883216 0.670344696 0.154966367 0.551992175 0.084582957 0.14393338 3.22E-07 6.49252984 1.842102036 LSSPVLHR ddPTM_HeLa_CUDC101_4h_R1 1 LSSPVLHR 8 0 Q16643-3;Q16643;Q16643-2;D6R9W4;D6RCR4 Q16643-3 DBN1 Drebrin 0 0 125.31 0.0059707 5944100 6916.5 6325.6 5503.8 5663.7 6445.5 6385.8 5907.6 6063.6 6600.7 6001.1 FALSE FALSE TRUE 6105.758355 6520.484238 5801.352076 5894.690167 5970.028306 6264.001504 6135.458111 6753.855714 6328.616352 5965.40519 1.023527851 1.093049681 0.97249925 0.988145814 1.000774988 1.050054658 1.028506516 1.132170489 1.060886252 1 12.54240442 -2.32418242 1.074139575 1.013147734 8.6554302 0.440122978 0.035398109 60.51282033 1.364259114 0.004790414 1088.475581 0.004740428 2.32418242 7.642282466 KPATPAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLR ddPTM_HeLa_CUDC101_4h_R1 13 KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLR 32 2 P29692-2;E9PQ49;P29692;P29692-4;P29692-3;E9PRY8;A0A087X1X7;E9PK01;E9PQZ1;E9PI39;E9PL71;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 1 0 KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR ;;;;;;;;;;;; 132.81 7.18E-18 18261798800 47997.6 41277.16 36754.83 35587.96 35788.49 37378.7 34417.58 33143.57 44035.3 42429.67 TRUE FALSE FALSE 42371.39409 42548.86037 38741.90729 37039.39083 33148.44439 36665.76357 35745.07759 36916.50004 42220.1463 42177.29644 1.004601946 1.008809572 0.918548854 0.878183145 0.785930991 0.869324653 0.847495705 0.875269473 1.001015946 1 15.364179 -6.490814458 2.137225027 1.003081305 0.846756601 0.895550963 0.024516882 0.063739154 0.579560727 0.003781157 0.005972576 3.23E-07 6.490814458 -0.156324704 AQQQEEQGS(ph)VNDVKEEEKEEK ddPTM_HeLa_CUDC101_4h_R1 1 AQQQEEQGSVNDVKEEEKEEK 21 2 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 1 0 AQQQEEQGS(1)VNDVKEEEKEEK 75.358 0.0025993 43272000 3947.1 2564.4 2596.2 2362 2213.4 2293.6 2153.1 2118.6 2430.5 2722.5 TRUE FALSE FALSE 3484.426921 2643.406124 2736.558425 2458.332569 2050.121892 2249.853401 2236.145788 2359.77286 2330.313761 2706.306449 1.287521198 0.976757871 1.011178326 0.90837184 0.757535013 0.831337265 0.826272202 0.871953308 0.861067956 1 11.4021095 -6.490623464 1.512677171 1.13148448 0.825558865 0.30225287 0.118196597 0.203754152 0.928894108 0.019712978 0.032775251 3.23E-07 6.490623464 -0.305925615 S(ph)ISNPPGSNLR ddPTM_HeLa_CUDC101_4h_R1 2 SISNPPGSNLR 11 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 S(0.999)IS(0.001)NPPGSNLR;S(0.997)IS(0.003)NPPGSNLR ; 157.03 0.00017244 27095000 4728 3535.7 3195.6 2966.9 2958.9 2359.18 2413.79 3440.2 3466.3 3717.6 TRUE FALSE FALSE 4173.791007 3644.630726 3368.363802 3087.903006 2740.627842 2314.182572 2506.890689 3831.818462 3323.417647 3695.48755 1.129429054 0.986238129 0.911480219 0.835587447 0.741614687 0.626218473 0.678365346 1.036891184 0.899317777 1 11.851549 -6.490506846 1.572828808 1.060167479 0.758281302 0.41618506 0.118336196 0.190364057 0.938082858 0.018552923 0.030636324 3.23E-07 6.490506846 -0.301886177 SS(ph)PATSLFVELDEEEVK ddPTM_HeLa_CUDC101_4h_R1 1 SSPATSLFVELDEEEVK 17 0 A0A087WTL4;A0A087WX97;Q9BXK5-4;Q9BXK5 A0A087WTL4 BCL2L13 Bcl-2-like protein 13 1 0 S(0.375)S(0.625)PATSLFVELDEEEVK 192.4 6.69E-12 4892900 2084.3 1731.2 1414.6 1258.5 1147.1 1396.7 1430.2 1093.3 1473.7 1553.1 TRUE FALSE FALSE 1839.981514 1784.53622 1491.077555 1309.82707 1062.480718 1370.060275 1485.363293 1217.756853 1412.953462 1543.862092 1.191804322 1.15589095 0.96581007 0.848409373 0.688196649 0.887424001 0.962108792 0.788773077 0.915207044 1 10.59232817 -6.489781381 3.251407829 1.097652182 0.837955608 0.535345279 0.099440074 0.129624065 2.791760594 0.015899591 0.024232637 3.24E-07 6.489781381 -0.259696574 IPCKS(ph)PPPELTDTATSTK ddPTM_HeLa_CUDC101_4h_R1 2 IPCKSPPPELTDTATSTK 18 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 IPCKS(0.999)PPPELT(0.001)DTATSTK;IPCKS(1)PPPELTDTATSTK ; 81.01 0.0048602 48863000 2735 2174.24 2732.7 2393.73 2113.37 2468.58 1765.65 625.43 2181.99 2614.63 TRUE FALSE FALSE 2414.407446 2241.225757 2880.438028 2491.356656 1957.470906 2421.495949 1833.751712 696.6264231 2092.047449 2599.078064 0.928947645 0.862315676 1.108253756 0.958553993 0.753140482 0.931674959 0.705539298 0.26802828 0.804919051 1 11.34378425 -4.249982681 1.39688472 0.956928454 1.29E-24 0.797279084 0.098830398 0.346956983 0.577799547 0.012563844 0.468560392 5.62E-05 4.249982681 -0.956928454 down YQES(ph)PGIQMK ddPTM_HeLa_CUDC101_4h_R1 1 YQESPGIQMK 10 0 Q9UHI6;E9PJ60 Q9UHI6 DDX20 Probable ATP-dependent RNA helicase DDX20 1 0 Y(0.009)QES(0.991)PGIQMK 137.84 0.0014845 93715000 6398.1 4689.5 4287.6 4171.1 4303.6 4241.3 3841.2 3971.3 4828.2 4339.8 TRUE FALSE FALSE 5648.124417 4833.977937 4519.400625 4341.215487 3986.132002 4160.404269 3989.356371 4423.376739 4629.179552 4313.986677 1.30925866 1.12053613 1.047615805 1.006311751 0.924001927 0.964398961 0.924749349 1.02535707 1.073063016 1 12.07480601 -6.489073672 2.094219293 1.148122592 0.961369375 0.462182271 0.078828019 0.274110766 2.39227275 0.019212382 0.030442043 3.24E-07 6.489073672 -0.186753217 VQGEAVSNIQENTQTPTVQEES(ph)EEEEVDETGVEVK ddPTM_HeLa_CUDC101_4h_R1 2 VQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVK 35 0 E9PAV3;F8VZJ2;F8W0W4;H0YHX9;Q13765;E9PAV3-2 E9PAV3 NACA "Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha" 1 0 VQGEAVSNIQENTQT(0.002)PT(0.078)VQEES(0.92)EEEEVDETGVEVK;VQGEAVSNIQENTQT(0.001)PT(0.075)VQEES(0.922)EEEEVDET(0.003)GVEVK ; 136.63 3.12E-23 64986000 9684.5 8542.3 7725.9 7088.2 7561.1 7450.8 7077.6 7107.4 8188.4 9066.2 TRUE FALSE FALSE 8549.297591 8805.478138 8143.585524 7377.287434 7003.332717 7308.688404 7350.585403 7916.477687 7850.870686 9012.273839 0.948628253 0.977053993 0.903610528 0.818582254 0.777088318 0.81097052 0.815619402 0.878410691 0.871130952 1 13.13767544 -6.488513257 2.450809777 0.975472769 0.816421695 0.660324918 0.042205221 0.075212716 0.899798828 0.004873247 0.007591119 3.25E-07 6.488513257 -0.159051075 VGDPPQPLPEEPMEVQGAERAS(ph)PEPQR ddPTM_HeLa_CUDC101_4h_R1 4 VGDPPQPLPEEPMEVQGAERASPEPQR 27 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR ;;; 99.964 7.82E-07 190787700 7366.3 5725.6 5139.33 5027.25 4944.94 5508.4 4234.47 4497.57 5587.2 5770.3 TRUE FALSE FALSE 6502.833481 5901.998949 5417.177725 5232.282985 4580.161628 5403.336448 4397.794926 5009.555189 5356.893251 5735.977999 1.133692194 1.028943791 0.944420939 0.912186725 0.79849707 0.942007875 0.76670359 0.873356765 0.933911053 1 12.48582378 -6.488332896 1.680979561 1.063497493 0.848980816 0.548152433 0.068523998 0.150219584 0.845082787 0.010770379 0.01760639 3.25E-07 6.488332896 -0.214516677 S(ph)PESQVIGENTK ddPTM_HeLa_CUDC101_4h_R1 2 SPESQVIGENTK 12 0 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 S(0.998)PES(0.002)QVIGENTK;S(0.997)PES(0.003)QVIGENTK ; 168.93 1.06E-06 20744000 3932.5 2757.4 2957.4 2611.3 2226.6 2413.2 2681.1 2053.2 3115.6 3319.6 TRUE FALSE FALSE 3471.538311 2842.352226 3117.28599 2717.800101 2062.348154 2367.172231 2784.510925 2286.927989 2987.173649 3299.854872 1.052027573 0.861356737 0.944673663 0.823612009 0.624981472 0.717356467 0.8438283 0.69303896 0.905243947 1 11.68818686 -6.487947721 1.193837262 1.021805024 0.72861195 0.63611911 0.078406112 0.152651177 0.433754427 0.012470991 0.021825807 3.25E-07 6.487947721 -0.293193074 ISDYFEFAGGSAPGTS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 1 ISDYFEFAGGSAPGTSPGR 19 0 Q86UE8-2;Q86UE8 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 0 ISDYFEFAGGSAPGT(0.237)S(0.763)PGR 137.32 4.87E-05 11740000 2127.2 1805.1 1648.9 1413.4 1687.5 1763.9 1395.4 1294.2 2168.8 1869 TRUE FALSE FALSE 1877.852841 1860.712991 1738.044522 1471.044561 1563.016487 1730.256546 1449.221045 1441.526497 2079.401146 1857.883105 1.01074865 1.001523178 0.935497243 0.791785316 0.841288929 0.931305388 0.780038874 0.775897306 1.11923142 1 10.85944402 -6.487580023 3.18943946 1.00470811 0.828809272 0.752144028 0.055508871 0.082089979 1.692359233 0.006744036 0.010298028 3.25E-07 6.487580023 -0.175898839 RSQS(ph)IEQESQEK ddPTM_HeLa_CUDC101_4h_R1 2 RSQSIEQESQEK 12 1 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 RS(0.011)QS(0.989)IEQESQEK;RSQS(0.999)IEQES(0.001)QEK ; 135.47 0.00022203 2772000 2889.3 2150.8 2197.97 2189.4 2157.99 1721.32 1796.96 2110.18 1988.82 2572.1 TRUE FALSE FALSE 2550.620634 2217.063599 2316.798907 2278.693195 1998.799377 1688.488689 1866.269349 2350.394362 1906.839998 2556.801035 0.99758276 0.867124023 0.906131871 0.891228204 0.781757888 0.660391116 0.729923574 0.919271515 0.745791312 1 11.32012418 -6.485702546 0.843129325 1.000990563 0.762521997 0.054992721 0.106538309 0.25331948 0.359377475 0.013910557 0.027110846 3.27E-07 6.485702546 -0.238468565 NGVAAEVS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 1 NGVAAEVSPAK 11 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 NGVAAEVS(1)PAK 79.639 0.040211 5422400 1811.6 1416.8 1306.8 1155.2 1268.4 1311 1052.9 1061.9 1429.3 1456.4 TRUE FALSE FALSE 1599.246994 1460.449929 1377.449561 1202.314049 1174.832659 1285.994859 1093.510706 1182.782404 1370.383649 1447.737268 1.104652777 1.008781055 0.951449957 0.830478068 0.811495763 0.88827917 0.755324001 0.816986915 0.946569298 1 10.49958409 -6.482748317 1.897018671 1.049146512 0.816689246 0.761224162 0.050748257 0.096841393 0.692888803 0.008009448 0.012888469 3.29E-07 6.482748317 -0.232457267 MQAS(ph)IEK ddPTM_HeLa_CUDC101_4h_R1 4 MQASIEK 7 0 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 1 0 MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK;MQAS(1)IEK ;;; 112.71 0.013498 3072234000 16456.7 16616.1 13906.4 16859.3 19844.2 17089.4 14536.3 4942.07 20463.8 18983.7 TRUE FALSE FALSE 14527.67057 17128.02235 14658.22205 17546.89513 18380.3329 16763.44817 15096.96996 5504.655272 19620.2735 18870.78411 0.769849864 0.907647623 0.776768043 0.929844517 0.974010025 0.88832812 0.800018159 0.29170252 1.039716918 1 14.20386675 -4.24951902 2.890931543 0.890277342 0.177432224 0.827229386 0.084115686 0.14478645 1.6560618 0.012984611 0.243471954 5.63E-05 4.24951902 -0.712845118 down STFS(ph)PAPRPEMPGTVEVESTFLAR ddPTM_HeLa_CUDC101_4h_R1 2 STFSPAPRPEMPGTVEVESTFLAR 24 1 Q92576-2;Q92576;E7EVH3;E7ER40 Q92576-2 PHF3 PHD finger protein 3 1 0 S(0.106)T(0.106)FS(0.735)PAPRPEMPGT(0.022)VEVES(0.016)T(0.016)FLAR;S(0.017)T(0.017)FS(0.46)PAPRPEMPGT(0.361)VEVES(0.073)T(0.073)FLAR ; 59.555 0.004049 33250000 1485.19 1223.68 1051.79 807.93 1129.67 1094.75 895.72 703.38 1332.93 1105.46 TRUE FALSE FALSE 1311.09828 1261.38013 1108.652949 840.8808776 1046.336495 1073.869468 930.2682204 783.449936 1277.986061 1098.884675 1.193117267 1.147873075 1.008889262 0.765213035 0.952180441 0.977235821 0.846556733 0.712950098 1.162984698 1 10.10182427 -6.482452437 5.212646878 1.097493566 0.863978276 0.675988919 0.08895999 0.11950927 8.034489383 0.016200735 0.024491363 3.29E-07 6.482452437 -0.233515291 AEDGS(ph)VIDYELIDQDAR ddPTM_HeLa_CUDC101_4h_R1 2 AEDGSVIDYELIDQDAR 17 0 P07355;P07355-2;H0YN42;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5;H0YNA0 P07355 ANXA2 Annexin A2;Annexin 1 0 AEDGS(0.993)VIDY(0.007)ELIDQDAR;AEDGS(0.994)VIDY(0.006)ELIDQDAR ; 195.17 2.30E-16 25746400 4160.8 3680.7 3313.5 3249.9 3635.5 2964.4 3160.4 3408.6 3124.1 3798.7 TRUE FALSE FALSE 3673.077331 3794.098004 3492.637833 3382.444969 3367.316408 2907.859009 3282.297687 3796.621246 2995.323276 3776.105163 0.972715847 1.00476492 0.924931293 0.895749674 0.891743281 0.770068333 0.869228357 1.005433133 0.793230894 1 11.88268323 -6.48127893 2.09724665 0.988304934 0.877439201 0 0.08213 0.210718038 1.841675672 0.00875854 0.013917534 3.30E-07 6.48127893 -0.110865733 KNTFTAWS(ph)DEESDYEIDDR ddPTM_HeLa_CUDC101_4h_R1 2 KNTFTAWSDEESDYEIDDR 19 1 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 KNT(0.015)FT(0.01)AWS(0.974)DEES(0.001)DYEIDDR;KNT(0.246)FT(0.246)AWS(0.502)DEES(0.006)DYEIDDR ; 78.352 0.0041441 38583000 3094 2662 2236.42 2411.5 2547.7 2488.5 2153.08 1663.02 3300.3 3334.5 TRUE FALSE FALSE 2731.32601 2744.013065 2357.32763 2509.851393 2359.761247 2441.036009 2236.125017 1852.331475 3164.260237 3314.666246 0.824012376 0.827839928 0.711180992 0.75719581 0.711915189 0.736434931 0.674615437 0.558828955 0.954624087 1 11.6946479 -6.480489809 0.06577222 1.536037218 1.89E-18 0.908284846 0.037672696 6.950385332 0.221117272 2.211434784 2.880067622 3.31E-07 6.480489809 -1.536037218 EES(ph)EEEEDEDDEEEEEEEKEK ddPTM_HeLa_CUDC101_4h_R1 8 EESEEEEDEDDEEEEEEEKEK 21 1 D6R9L5;H0Y8X0;A0A494C198;B4DFG0;H0Y993;P35659;A0A494C028 D6R9L5 DEK Protein DEK 1 0 EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK;EES(1)EEEEDEDDEEEEEEEKEK ;;;;;;; 176.65 5.63E-10 3186497000 15067.59 11817.21 10507.03 11178.95 10353.53 10906.19 10998.58 10275.3 13505.6 10624.44 TRUE FALSE FALSE 13301.38994 12181.28423 11075.07182 11634.8759 9589.770719 10698.1726 11422.79891 11444.99862 12948.89345 10561.24536 1.259452791 1.153394682 1.048652072 1.10165757 0.908015143 1.012965066 1.081576891 1.083678887 1.226076378 1 13.36649234 -6.480449748 2.364964798 1.127481604 1.030424011 0.294184883 0.084138336 0.45870738 5.097643754 0.01776711 0.027858608 3.31E-07 6.480449748 -0.097057594 EDEIS(ph)PPPPNPVVK ddPTM_HeLa_CUDC101_4h_R1 4 EDEISPPPPNPVVK 14 0 P10644;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EPB2;P10644-2;K7EMU2;K7EMZ6 P10644 PRKAR1A "cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed" 1 0 EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK;EDEIS(1)PPPPNPVVK ;;; 168.41 5.82E-07 570248000 30996.2 23658.1 23308.4 21892.3 21055.2 22494.1 19456.2 18859.7 24166 26848.2 TRUE FALSE FALSE 27362.87242 24386.97802 24568.52261 22785.16262 19501.99984 22065.06252 20206.63215 21006.61201 23169.86725 26688.50571 1.025268058 0.913763336 0.920565687 0.853744412 0.730726555 0.826762755 0.757128644 0.787103341 0.868159031 1 14.70393091 -6.479584346 1.081834807 1.011990644 0.774683462 0.633899841 0.056305938 0.09371175 0.21865262 0.005862451 0.010579552 3.31E-07 6.479584346 -0.237307182 EDKS(ph)PETGTAGGSSTASYSAGR ddPTM_HeLa_CUDC101_4h_R1 2 EDKSPETGTAGGSSTASYSAGR 22 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 EDKS(0.998)PET(0.002)GTAGGSSTASYSAGR;EDKS(0.99)PET(0.007)GT(0.003)AGGSSTASYSAGR ; 121.97 3.13E-07 52876000 5625.2 4086.5 4384.5 4575.8 3948.9 4130.1 3902.5 3255.2 5136.4 5446.1 TRUE FALSE FALSE 4965.822583 4212.400221 4621.539332 4762.420902 3657.597514 4051.325224 4053.020732 3625.75881 4924.675418 5413.706355 0.917268551 0.778099133 0.85367381 0.879696938 0.67561801 0.74834595 0.748659138 0.669736881 0.909667997 1 12.40240092 -6.478499686 0.294239119 1.020259001 0.633229679 0.702215142 0.057224524 0.647207736 0.129440621 0.039823988 0.092441251 3.32E-07 6.478499686 -0.387029322 EVIEIEDAS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 2 EVIEIEDASPTK 12 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 EVIEIEDAS(0.998)PT(0.002)K;EVIEIEDAS(0.998)PT(0.002)K ; 237.07 5.10E-43 33424000 16480 10954.6 10418.1 11138.7 10466.8 11649.6 9069.5 7172 13344.8 13051.4 TRUE FALSE FALSE 14548.23938 11292.09824 10981.334 11592.98433 9694.685017 11427.40329 9419.313653 7988.43149 12794.7217 12973.76969 1.121357919 0.87037912 0.846425847 0.893570998 0.747252745 0.880808243 0.726027506 0.615737113 0.986199231 1 13.66331011 -6.478492407 0.820099914 1.056722761 0.734780425 0.648107993 0.082887715 0.250051384 0.33557954 0.018200702 0.036022532 3.32E-07 6.478492407 -0.321942336 KASSPS(ph)PLTIGTPESQR ddPTM_HeLa_CUDC101_4h_R1 2 KASSPSPLTIGTPESQR 17 1 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 1 0 KASS(0.01)PS(0.97)PLT(0.004)IGT(0.015)PESQR;KAS(0.075)S(0.131)PS(0.791)PLT(0.003)IGTPESQR ; 122.35 0.00015973 88747000 5213.7 5622.6 4770.2 4261 4771.4 4701.8 4270.8 5535.6 4966.4 5347.2 TRUE FALSE FALSE 4602.557989 5795.825642 5028.091441 4434.781998 4419.423328 4612.120999 4435.526187 6165.750328 4761.68289 5315.394617 0.865892059 1.090384827 0.945948853 0.834327894 0.831438425 0.867691175 0.834467901 1.159979789 0.89582867 1 12.37596109 -6.477231786 24.4725689 0.949846328 0.894879468 0.051829972 0.107047133 863.9117432 463166.2457 0.016594774 0.025348194 3.33E-07 6.477231786 -0.054966859 LGAS(ph)NSPGQPNS(ph)VKR ddPTM_HeLa_CUDC101_4h_R1 1 LGASNSPGQPNSVKR 15 1 P49756 P49756 RBM25 RNA-binding protein 25 2 0 LGAS(0.77)NS(0.23)PGQPNS(1)VKR 184.92 1.78E-10 15096000 7288.6 5727.7 5923.7 6141.7 6703.1 6319 4989.2 1850.6 5991.9 5974.4 TRUE FALSE FALSE 6434.241357 5904.163648 6243.95314 6392.185073 6208.625667 6198.475603 5181.635115 2061.264824 5744.911346 5938.864003 1.083412813 0.994157072 1.051371632 1.076331276 1.045423109 1.043714017 0.872496005 0.347080658 0.967341792 1 12.53597128 -4.248205495 2.210392599 1.041460008 0.150580692 0.970034425 0.036152033 0.072698391 0.389334904 0.004983427 0.128095276 5.65E-05 4.248205495 -0.890879316 down LSVDYGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LSVDYGKK 8 1 Q9BQE3;F5H5D3;P0DPH8;P0DPH7;F8VQQ4;P0DPH7-2;C9JDS9;P68363;Q71U36-2;Q71U36;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8 Q9BQE3;P68363;P68366-2 TUBA1C;TUBA1A;TUBA4A;TUBA1B Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain 0 1 ; LSVDYGK(1)K;LSVDYGK(1)K 135.83 0.0027851 15472200 14528.4 5144.8 3990.1 4087 10236.1 8567.5 10676.4 7883.6 7299.7 3110.7 FALSE TRUE FALSE 12825.40298 5303.30519 4205.816875 4253.685526 9481.003296 8404.089212 11088.19232 8781.037157 6998.803276 3092.197418 4.147666284 1.715060351 1.360138538 1.375619002 3.066105431 2.717837213 3.585861711 2.839740149 2.263375306 1 11.59441671 -9.675600316 1.545425069 1.002669659 2.798255821 0.060954118 0.958161422 0.409550384 1.765613399 0.74237653 0.166820002 2.11E-10 9.675600316 1.795586162 LSVEESEAAGDGVDTK ddPTM_HeLa_CUDC101_4h_R1 2 LSVEESEAAGDGVDTK 16 0 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 0 0 ; ; 242.07 2.39E-43 9549200 3220 2961.1 2649.1 2372.2 3357.7 2744.6 2548.9 2301.7 2922.8 3465.7 FALSE FALSE TRUE 2842.556481 3052.327981 2792.318359 2468.94857 3110.00916 2692.251328 2647.211927 2563.716224 2802.320947 3445.085862 0.825104684 0.885994748 0.810522138 0.716658065 0.902737779 0.781475828 0.768402308 0.744166133 0.813425575 1 11.75032422 -13.52287875 0.153385642 1.76399971 0.737078448 0.076085077 0.076957419 24.97950488 0.259344676 5.704942841 0.105719054 3.00E-14 13.52287875 -1.026921262 VLS(ph)STSEEDEPGVVK ddPTM_HeLa_CUDC101_4h_R1 2 VLSSTSEEDEPGVVK 15 0 Q8NI08-2;Q8NI08;Q8NI08-7;Q8NI08-4;Q8NI08-3 Q8NI08-2 NCOA7 Nuclear receptor coactivator 7 1 0 VLS(0.458)S(0.458)T(0.08)S(0.004)EEDEPGVVK;VLS(0.743)S(0.253)T(0.004)SEEDEPGVVK ; 252.91 3.60E-56 14825000 6993.6 5787.9 4972 5197.9 4431.3 3828.6 4101.1 7224.8 5707.2 5604.1 TRUE FALSE FALSE 6173.82081 5966.218339 5240.801359 5409.892829 4104.411827 3755.575834 4259.280801 8047.242028 5471.9468 5570.766564 1.108253368 1.070986958 0.940768438 0.971121796 0.736776848 0.674157818 0.764577146 1.444548418 0.982261012 1 12.44366015 -6.477216852 2.136414736 1.053653627 0.88382814 0.061787537 0.20329919 0.499665404 4.528090496 0.032093047 0.050961718 3.33E-07 6.477216852 -0.169825487 SASVVSSDSISTSADNFS(ph)PDLR ddPTM_HeLa_CUDC101_4h_R1 1 SASVVSSDSISTSADNFSPDLR 22 0 Q13614 Q13614 MTMR2 Myotubularin-related protein 2 1 0 SASVVSS(0.001)DSISTS(0.001)ADNFS(0.998)PDLR 210.66 2.69E-26 128420000 3606.2 2909.7 2844.6 2562 2953.6 2859.4 2403.2 2478.3 3363 3116.3 TRUE FALSE FALSE 3183.486703 2999.344408 2998.38768 2666.489434 2735.718812 2804.861709 2495.892229 2760.419654 3224.375717 3097.764109 1.027672408 0.968228794 0.96791995 0.860778723 0.883126899 0.905447158 0.805707646 0.891100664 1.040871933 1 11.59701157 -6.476917029 1.537421208 1.012313873 0.865138119 0.830356 0.030246167 0.100517198 0.472555613 0.004704061 0.007847132 3.33E-07 6.476917029 -0.147175754 TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK ddPTM_HeLa_CUDC101_4h_R1 1 TENGTCPSPPQPLSPAAALGSGSAAAVPK 29 0 Q12948 Q12948 FOXC1 Forkhead box protein C1 2 0 T(0.008)ENGT(0.035)CPS(0.958)PPQPLS(0.997)PAAALGS(0.001)GS(0.002)AAAVPK 97.248 2.80E-08 12295000 1796.6 1409.4 1353.4 1130.5 1408 1441 991.29 1053.4 1525.2 1473.2 TRUE FALSE FALSE 1586.005271 1452.821943 1426.568898 1176.606676 1304.134645 1413.515326 1029.524387 1173.314798 1462.33061 1464.437341 1.083013405 0.992068355 0.974141302 0.803453069 0.890536323 0.96522759 0.703017028 0.80120519 0.998561406 1 10.51613075 -6.476533242 2.078350541 1.038013424 0.834206206 0.618779743 0.069016576 0.154147763 1.321972818 0.011710068 0.018662969 3.34E-07 6.476533242 -0.203807219 LDQPVSAPPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 LDQPVSAPPSPR 12 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 LDQPVSAPPS(1)PR;LDQPVSAPPS(1)PR;LDQPVSAPPS(1)PR;LDQPVSAPPS(1)PR ;;; 167.92 6.91E-06 410810000 6567.2 6172 6258.8 6721.3 7673 6800.5 6336.8 6960.5 6789.4 6842.5 TRUE FALSE FALSE 5797.402771 6362.152004 6597.16966 6995.423666 7106.978077 6670.791793 6581.212499 7752.855185 6509.538058 6801.800506 0.85233355 0.935362923 0.969915194 1.028466457 1.044867175 0.980739113 0.967569174 1.13982396 0.957031606 1 12.73170098 -6.476135907 2.709824166 0.92883597 1.026625076 0.401237876 0.055258385 0.260596043 3.80361827 0.010896531 0.016896765 3.34E-07 6.476135907 0.097789106 EDKS(ph)PSEESAPTT(ph)SPESVSGSVPSSGSSGR ddPTM_HeLa_CUDC101_4h_R1 1 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 P54725-2;P54725-3;P54725;A0A494C0B4 P54725-2 RAD23A UV excision repair protein RAD23 homolog A 2 0 EDKS(0.5)PS(0.295)EES(0.205)APT(0.145)T(0.676)S(0.179)PESVSGSVPSSGSSGR 88.592 5.16E-07 10316000 971.09 725.79 699.35 506.53 636.1 493.82 496.39 515.94 890.95 821.76 TRUE FALSE FALSE 857.2603023 748.1507296 737.1589764 527.1884828 589.1761703 484.4012063 515.5359286 574.6725241 854.2246639 816.872135 1.049442459 0.915872506 0.902416602 0.645374545 0.721258744 0.59299514 0.631109701 0.703503645 1.045726286 1 9.673966461 -6.47551813 1.494356023 1.021867387 0.647346574 0.923962149 0.047200759 0.064920628 0.288362191 0.00761319 0.012775011 3.35E-07 6.47551813 -0.374520813 TVDLGIS(ph)DLEDDC ddPTM_HeLa_CUDC101_4h_R1 1 TVDLGISDLEDDC 13 0 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 0 TVDLGIS(1)DLEDDC 100.04 0.0014395 0 372.74 299.14 323.61 136.16 322.65 180.94 329.38 212.5 238.55 375.21 TRUE FALSE FALSE 329.0479822 308.3561488 341.1053355 141.7131933 298.8487523 177.488871 342.0842969 236.690141 228.716868 372.9782342 0.882217652 0.826740331 0.914544883 0.379950304 0.801249845 0.475869246 0.917169597 0.63459505 0.613217735 1 8.542947632 -6.474852235 24.92299301 0.930986321 0.655764177 0.180634189 0.178148212 249.9540272 129711.7361 0.021351682 0.032614737 3.35E-07 6.474852235 -0.275222144 SEEDNEIES(ph)EEEVQPK ddPTM_HeLa_CUDC101_4h_R1 2 SEEDNEIESEEEVQPK 16 0 A0A087WWJ1;A0A494C0M1;P52701-2;P52701;C9J7Y7;P52701-3 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 SEEDNEIES(1)EEEVQPK;SEEDNEIES(1)EEEVQPK ; 308.73 8.10E-144 59834000 7801.8 5027.4 5409.7 5199 4559.2 5261.2 4567.6 3390.5 6243.9 6314.6 TRUE FALSE FALSE 6887.284831 5182.288235 5702.164745 5411.037692 4222.876899 5160.851376 4743.773862 3776.460815 5986.523799 6277.040478 1.097218483 0.825594204 0.908416118 0.86203645 0.672749668 0.822179082 0.755734152 0.601630789 0.953717571 1 12.6158688 -6.474820778 0.861122593 1.044959956 0.712735018 0.655914081 0.083223686 0.211055224 0.312188364 0.016270424 0.031710077 3.35E-07 6.474820778 -0.332224937 T(ph)FMIDEILS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 TFMIDEILSK 10 0 Q9UMQ3 Q9UMQ3 BARX2 Homeobox protein BarH-like 2 2 0 T(1)FMIDEILS(1)K 101.46 0.018453 263870000 6512.5 5627.8 5355 4389.5 5760.4 4948.4 5260.2 5304 5750.1 5605.4 TRUE FALSE FALSE 5749.114622 5801.185847 5644.507498 4568.522783 5335.466768 4854.017515 5463.087676 5907.78592 5513.078444 5572.058832 1.03177565 1.04112071 1.013002136 0.819898519 0.957539561 0.871135367 0.980443287 1.060251892 0.989414974 1 12.44399478 -6.474708892 24.99886213 1.017844037 0.935491218 0.284140294 0.061186523 366.7811217 190349.6355 0.00911323 0.013920427 3.35E-07 6.474708892 -0.082352819 VAGS(ph)PVTPLPEQEASPAR ddPTM_HeLa_CUDC101_4h_R1 2 VAGSPVTPLPEQEASPAR 18 0 O15047 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A 1 0 VAGS(0.832)PVT(0.168)PLPEQEASPAR;VAGS(0.998)PVT(0.002)PLPEQEASPAR ; 143.43 9.06E-05 9132500 1462.72 1098.15 1245.83 1381.32 1399.2 1489.73 1158.03 1258.26 1515.51 1374.63 TRUE FALSE FALSE 1291.262179 1131.9827 1313.183338 1437.6562 1295.983804 1461.315882 1202.695605 1401.495232 1453.040036 1366.45364 0.944973281 0.828409151 0.961015654 1.052107557 0.948428667 1.069422218 0.880158368 1.025644187 1.063365777 1 10.4162208 -6.474143985 24.99550686 0.959146882 0.991920773 0.053687285 0.074143368 1027.977674 527237.5962 0.01039625 0.015880316 3.36E-07 6.474143985 0.032773891 RT(ph)PTMPQEEAAEK ddPTM_HeLa_CUDC101_4h_R1 3 RTPTMPQEEAAEK 13 1 Q9NYV4-2 Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 RT(0.936)PT(0.064)MPQEEAAEK;RT(0.5)PT(0.5)MPQEEAAEK;RT(0.9)PT(0.1)MPQEEAAEK ;; 174.24 1.43E-06 85993500 11805.9 8757.1 9221.3 9213.9 8754.5 8612.6 8547.2 8774 9134.1 9784.1 TRUE FALSE FALSE 10422.0303 9026.895871 9719.831371 9589.682668 8108.697976 8448.329005 8876.868367 9772.796694 8757.588532 9725.903738 1.071574486 0.928129263 0.99937565 0.985993994 0.833721801 0.868642054 0.912703704 1.00482145 0.900439565 1 13.2476166 -6.473805949 1.198574407 1.030475672 0.90836554 0.018043905 0.06899773 0.308250286 0.88211086 0.010471319 0.018449127 3.36E-07 6.473805949 -0.122110132 SST(ph)SSYRS(ph)RSY(ph)S(ph)RS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SSTSSYRSRSYSRSR 15 3 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 5 0 S(0.015)S(0.015)T(0.255)S(0.255)S(0.256)Y(0.208)RS(0.959)RS(0.418)Y(0.856)S(0.881)RS(0.881)R 51.939 0.027017 8979300 2439 2042.5 1979.6 1816.2 2178 1967 1794.5 1676.9 2340.4 2306 TRUE FALSE FALSE 2153.104117 2105.427004 2086.623164 1890.272486 2017.333279 1929.482752 1863.714466 1867.791518 2243.927721 2292.283809 0.939283394 0.918484437 0.910281334 0.824624106 0.880053888 0.841729433 0.813038271 0.81481687 0.978904842 1 11.16256996 -6.473110462 0.301778783 1.008061846 0.774919554 0.910699849 0.019340919 0.374669953 0.077773277 0.013795989 0.032419097 3.36E-07 6.473110462 -0.233142292 QEPES(ph)EEEEEEKQEKEEK ddPTM_HeLa_CUDC101_4h_R1 1 QEPESEEEEEEKQEKEEK 18 2 P49756 P49756 RBM25 RNA-binding protein 25 1 0 QEPES(1)EEEEEEKQEKEEK 50.924 0.030708 300940000 5491 5066.9 4577.3 4613.7 4845.4 4113.3 4782.9 4593.3 4855.7 5385.3 TRUE FALSE FALSE 4847.353304 5223.005183 4824.762684 4801.866628 4487.964495 4034.845656 4967.378055 5116.182705 4655.545991 5353.267996 0.905494234 0.975666674 0.901274266 0.896997242 0.838359764 0.753716358 0.927915071 0.955712045 0.869664286 1 12.38620416 -6.472958893 1.827696673 0.956114434 0.866723614 0.154854459 0.062151967 0.334175473 2.216456115 0.010399256 0.016891404 3.37E-07 6.472958893 -0.089390821 NSSTDQGS(ph)DEEGSLQK ddPTM_HeLa_CUDC101_4h_R1 2 NSSTDQGSDEEGSLQK 16 0 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 NSSTDQGS(0.554)DEEGS(0.446)LQK;NSSTDQGS(0.996)DEEGS(0.004)LQK ; 354.96 1.37E-218 98573000 9625 6140.6 6005.3 6144.6 4664.5 5170.3 4455.6 4005.6 7144.4 7854.7 TRUE FALSE FALSE 8496.772091 6329.784608 6329.964683 6395.203347 4320.409128 5071.685142 4627.453985 4461.581313 6849.904808 7807.979895 1.088216441 0.810681469 0.810704532 0.819059915 0.553332512 0.649551511 0.592657006 0.571413012 0.877295395 1 12.93073362 -6.47253647 0.892143819 1.042605282 0.587641678 0.758377886 0.085592105 0.13255626 0.210418757 0.014262682 0.027490146 3.37E-07 6.47253647 -0.454963604 DSENLAS(ph)PSEYPENGER ddPTM_HeLa_CUDC101_4h_R1 2 DSENLASPSEYPENGER 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 DS(0.001)ENLAS(0.991)PS(0.008)EYPENGER;DS(0.001)ENLAS(0.979)PS(0.021)EYPENGER ; 300.2 4.25E-123 263860000 3571.8 3937.8 3420.4 3675.2 5023.1 4186.8 4075.8 3766.9 3700.5 3571.6 TRUE FALSE FALSE 3153.119018 4059.118951 3605.31717 3825.090542 4652.55592 4106.943766 4233.004971 4195.70867 3547.963824 3550.355964 0.888113488 1.143299148 1.015480478 1.077382263 1.310447732 1.156769577 1.192276215 1.181771268 0.999326225 1 11.79374796 -6.47080344 1.081410431 0.95174402 1.202489977 0.589316856 0.07505013 0.21676816 0.505204672 0.014289109 0.025922762 3.38E-07 6.47080344 0.250745957 VEEAS(ph)PGRPS(ph)SVDTLLSPTALIDSILR ddPTM_HeLa_CUDC101_4h_R1 1 VEEASPGRPSSVDTLLSPTALIDSILR 27 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 0 VEEAS(0.996)PGRPS(0.498)S(0.498)VDT(0.007)LLSPTALIDSILR 75.43 0.00013712 49599000 761.42 606.36 523.69 445.43 466.05 362.84 635.6 597.33 546.86 430.62 TRUE FALSE FALSE 672.1675018 625.0412329 552.0022655 463.5965607 431.67042 355.9194315 660.1153049 665.3276327 524.3181993 428.0586531 1.570269628 1.46017661 1.2895482 1.083021117 1.008437551 0.831473512 1.542114148 1.554290815 1.224874665 1 8.74166468 -6.46946561 23.34681866 1.295121687 1.190630204 0.039692208 0.249907659 603.0445404 263588.831 0.047753194 0.072943592 3.39E-07 6.46946561 -0.104491483 GDMS(ph)DEDDENEFFDAPEIITMPENLGHK ddPTM_HeLa_CUDC101_4h_R1 6 GDMSDEDDENEFFDAPEIITMPENLGHK 28 0 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(0.998)DEDDENEFFDAPEIIT(0.002)MPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(1)DEDDENEFFDAPEIITMPENLGHK;GDMS(0.966)DEDDENEFFDAPEIIT(0.034)MPENLGHK ;;;;; 166.74 2.08E-16 135364000 7947.87 6278.06 6088.23 5663.24 6610.56 6558.72 6273.981 4898.36 7735.93 6148.37 TRUE FALSE FALSE 7016.232727 6471.479587 6417.37813 5894.211406 6122.912159 6433.623344 6515.970549 5455.969503 7417.051691 6111.799222 1.147981547 1.058850161 1.049998191 0.96439873 1.001818276 1.0526562 1.06612968 0.892694492 1.213562721 1 12.57738143 -6.469301719 5.0783041 1.070430119 1.002916426 0.294531951 0.07192166 0.287950708 16.12992816 0.010753323 0.016344318 3.39E-07 6.469301719 -0.067513693 TIQEVLEEQS(ph)EDEDR ddPTM_HeLa_CUDC101_4h_R1 1 TIQEVLEEQSEDEDR 15 0 M0R0Q7;P18858-2;P18858;P18858-3 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 0 TIQEVLEEQS(1)EDEDR 302.34 5.00E-123 20440000 2505.1 1934 1753.8 1665.5 1673.5 1831.9 1656.1 1337.7 2253.6 1875.9 TRUE FALSE FALSE 2211.455975 1993.584248 1848.615733 1733.426289 1550.049239 1796.95956 1719.976332 1489.978361 2160.705654 1864.742063 1.185931298 1.069093837 0.991351978 0.929579658 0.831240561 0.963650467 0.922366887 0.79902652 1.158715565 1 10.86476037 -6.467217087 2.056081853 1.089059984 0.889095498 0.711872077 0.064315859 0.177448244 1.486992064 0.013123928 0.02102141 3.41E-07 6.467217087 -0.199964485 (ac)SQPGQKPAAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SQPGQKPAASPR 12 1 P20810-6;P20810-9;P20810-7;P20810-10;P20810-5;F8W7E0;E9PSG1 P20810-6 CAST Calpastatin 1 0 SQPGQKPAAS(1)PR;SQPGQKPAAS(1)PR ; 92.792 0.0018673 217741000 3553.7 2782.4 2743.3 2522.86 2510.57 2534.63 2112.32 2477.18 2731.48 3157.1 TRUE FALSE FALSE 3137.140673 2868.122446 2891.611096 2625.753136 2325.370253 2486.286156 2193.79289 2759.172158 2618.887238 3138.321429 0.999623762 0.913903343 0.921387806 0.83667438 0.740959875 0.792234388 0.699033843 0.879187241 0.834486619 1 11.61577741 -6.467124055 1.115894487 1.000062559 0.770382246 0.45876829 0.070554498 0.125174878 0.310532763 0.007680533 0.013840617 3.41E-07 6.467124055 -0.229680312 PIPQT(ph)PESAGNK ddPTM_HeLa_CUDC101_4h_R1 1 PIPQTPESAGNK 12 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 PIPQT(0.924)PES(0.076)AGNK 173.76 3.03E-06 35133000 5579.2 4032.7 3834.5 3723.7 2620.1 2891 2646.4 2632.4 3570.3 5214.5 TRUE FALSE FALSE 4925.214634 4156.942707 4041.804669 3875.568581 2426.820443 2835.858992 2748.472534 2932.061775 3423.130723 5183.483922 0.950174575 0.801959217 0.779746736 0.747676397 0.468183268 0.547095165 0.530236531 0.565654648 0.660391886 1 12.33970637 -6.466597889 0.78862704 0.986624913 0.514874567 0.54601449 0.11610037 0.103891049 0.128877839 0.010785073 0.021858024 3.42E-07 6.466597889 -0.471750345 IFVGGLSPDT(ph)PEEK ddPTM_HeLa_CUDC101_4h_R1 1 IFVGGLSPDTPEEK 14 0 Q14103-3;Q14103;H0YA96;D6RAF8;Q14103-4;H0Y8G5;Q14103-2;D6RF44 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 IFVGGLS(0.019)PDT(0.981)PEEK 245.4 4.15E-55 31250000 4912.7 4506.1 3661 3693.4 4549.7 3919.6 3617.9 3404 4653.2 4682.6 TRUE FALSE FALSE 4336.840753 4644.9276 3858.924734 3844.032816 4214.077695 3844.84016 3757.443615 3791.497601 4461.393126 4654.747687 0.93170265 0.997890307 0.829029841 0.825830544 0.90532892 0.82600399 0.807228204 0.814544172 0.958460786 1 12.18448725 -6.466523626 0.329710487 1.00135869 0.777355436 0.678300387 0.042015798 0.724529089 0.173190262 0.025468977 0.061516009 3.42E-07 6.466523626 -0.224003254 EIQNGNLHES(ph)DSESVPR ddPTM_HeLa_CUDC101_4h_R1 2 EIQNGNLHESDSESVPR 17 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 1 0 EIQNGNLHES(1)DSESVPR;EIQNGNLHES(0.719)DS(0.233)ES(0.047)VPR ; 285.1 2.96E-124 15481000 4004.1 3281.91 3151.1 2771.94 3166.9 3239.08 2902.81 2783.78 2858.18 3411.24 TRUE FALSE FALSE 3534.745468 3383.021757 3321.457998 2884.991695 2933.284096 3177.299946 3014.772354 3100.674263 2740.364611 3390.949793 1.042405722 0.997662001 0.979506687 0.850791628 0.865033184 0.936994099 0.889064285 0.914396984 0.808140721 1 11.72747371 -6.466065426 3.60080555 1.018359049 0.892501357 0.021079998 0.071244588 0.072664648 1.88251132 0.004480262 0.006855254 3.42E-07 6.466065426 -0.125857691 LTAEDLFEAR ddPTM_HeLa_CUDC101_4h_R1 2 LTAEDLFEAR 10 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 114.97 0.036072 17931300 4844.6 3998.6 3484.1 3517.3 4194.8 3987.4 3852.2 4076.3 4406.4 4353 FALSE FALSE TRUE 4276.723332 4121.792126 3672.460985 3660.750697 3885.357961 3911.346988 4000.780644 4540.329515 4224.766327 4327.108162 0.988356004 0.952551212 0.848710235 0.846003973 0.897910987 0.903917083 0.924585311 1.049275716 0.976348676 1 12.07918747 -7.046774312 4.120576131 0.994068601 0.907727998 0.289619006 0.053187986 0.182952981 6.569410752 0.008966633 0.011300619 8.98E-08 7.046774312 -0.086340604 LTAEEMDER ddPTM_HeLa_CUDC101_4h_R1 2 LTAEEMDER 9 0 P46940;A0A0J9YXZ5;H0YLE8;A0A087X225 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 0 ; ; 163.15 0.00024644 37934000 7249.9 7139.2 7039.2 6877.1 7194.8 7271 6085.3 6759.2 7341.6 7123.3 FALSE FALSE TRUE 6400.077712 7359.15029 7419.760444 7157.577863 6664.053938 7132.317789 6320.012059 7528.640006 7038.976141 7080.930295 0.903847015 1.039291447 1.047851078 1.010824505 0.941126894 1.007257167 0.892539793 1.063227527 0.994075051 1 12.7897232 LTAIIEEAEEAPGARPQLQDAWR ddPTM_HeLa_CUDC101_4h_R1 3 LTAIIEEAEEAPGARPQLQDAWR 23 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 ;; ;; 193.19 1.75E-15 45435300 2136.39 2144.68 2450.95 2567.92 2713.39 2554.64 2202.61 2096.98 2556.65 2964.41 FALSE FALSE TRUE 1885.965603 2210.755049 2583.455771 2672.650877 2513.228626 2505.914498 2287.565406 2335.691727 2451.263805 2946.777557 0.64000949 0.750228005 0.876705391 0.906974084 0.852873546 0.85039147 0.776293887 0.792625735 0.831845552 1 11.52492244 -9.639067264 1.486972094 0.999264644 0.785900208 0.064024596 0.089006858 0.3178215 1.269987031 0.066057329 0.01522467 2.30E-10 9.639067264 -0.213364436 SGS(ph)NGSVVSLEQQQK ddPTM_HeLa_CUDC101_4h_R1 1 SGSNGSVVSLEQQQK 15 0 Q2M1P5 Q2M1P5 KIF7 Kinesin-like protein KIF7 1 0 S(0.004)GS(0.996)NGSVVSLEQQQK 226.79 7.70E-33 20823000 2648.1 2330.5 2570.7 2910.7 2901.7 2890.7 2762.1 3027.3 2505.4 2847.4 TRUE FALSE FALSE 2337.693732 2402.299943 2709.679818 3029.410927 2687.647372 2835.564714 2868.635122 3371.915595 2402.126352 2830.463538 0.825904909 0.84873022 0.95732723 1.070287918 0.949543188 1.00180224 1.013485983 1.191294482 0.848668891 1 11.46682262 -6.465973103 5.072043126 0.909912308 1.034889114 0.495475298 0.075704827 0.201980326 10.96557184 0.013833513 0.021048932 3.42E-07 6.465973103 0.124976806 AAS(ph)PPASASDLIEQQQKR ddPTM_HeLa_CUDC101_4h_R1 2 AASPPASASDLIEQQQKR 18 1 Q5VSL9;Q5VSL9-3;Q5VSL9-2 Q5VSL9 STRIP1 Striatin-interacting protein 1 1 0 AAS(0.739)PPAS(0.178)AS(0.082)DLIEQQQKR;AAS(1)PPASASDLIEQQQKR ; 83.359 0.0041402 68000000 2778 3050.6 3102.4 3101 4632.8 4105.1 3995.7 4268.4 3669.1 1503.62 TRUE FALSE FALSE 2452.367051 3144.58537 3270.125128 3227.472184 4291.047574 4026.802057 4149.815487 4754.297403 3517.858145 1494.676401 1.640734442 2.103856974 2.187848236 2.159311662 2.870887351 2.694096229 2.776397275 3.180820543 2.353591815 1 10.54561746 -6.465189607 0.274984903 0.844407698 3.526924543 0.470276274 0.441654038 0.319610804 0.05705972 0.13508204 0.310497174 3.43E-07 6.465189607 2.682516845 RS(ph)ESPPAELPSLR ddPTM_HeLa_CUDC101_4h_R1 1 RSESPPAELPSLR 13 1 Q14669;Q14669-2;Q14669-3;G5E9G6;H7C1L9 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 RS(0.865)ES(0.135)PPAELPSLR 157.37 4.30E-05 21559000 2246.2 1636.5 1853.2 1570.2 1425.4 1507.2 1399.2 1305 1842.6 2094.1 TRUE FALSE FALSE 1982.903841 1686.918625 1953.389598 1634.239543 1320.251082 1478.452671 1453.167613 1453.555925 1766.647248 2081.6442 0.952566169 0.810377982 0.938387837 0.785071504 0.634234747 0.710233128 0.698086451 0.698272993 0.848678774 1 11.02350779 -6.463642684 0.719470554 0.986115632 0.67233634 0.672750113 0.067885319 0.171896461 0.177519117 0.011249241 0.02369809 3.44E-07 6.463642684 -0.313779292 VHGLPTTS(ph)PSGMNMAELAQQVVK ddPTM_HeLa_CUDC101_4h_R1 2 VHGLPTTSPSGMNMAELAQQVVK 23 0 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 VHGLPT(0.022)T(0.109)S(0.715)PS(0.154)GMNMAELAQQVVK;VHGLPT(0.072)T(0.065)S(0.431)PS(0.431)GMNMAELAQQVVK ; 92.147 0.001011 35586000 4641.2 4262.5 4243.2 3790.9 4908.2 4591.8 3988.6 2033.25 4752.9 5022.6 TRUE FALSE FALSE 4097.165572 4393.822573 4472.600227 3945.509288 4546.131865 4504.219065 4142.441638 2264.706961 4556.98345 4992.725352 0.820627069 0.880044918 0.895823405 0.790251618 0.910551161 0.902156387 0.829695476 0.45360135 0.91272464 1 12.28561183 -4.247869808 2.821419704 0.899551745 0.363956202 0.852324185 0.053897119 0.163347901 1.733039523 0.010421308 0.203519891 5.65E-05 4.247869808 -0.535595543 down AMADELS(ph)EK ddPTM_HeLa_CUDC101_4h_R1 2 AMADELSEK 9 0 E9PCT5;Q03135 E9PCT5 CAV1 Caveolin;Caveolin-1 1 0 AMADELS(1)EK;AMADELS(1)EK ; 115.23 0.0076288 35843000 10790.3 6810.1 6149.6 7023.6 4740.9 6165.8 4914.8 5879.9 5090.6 6818 TRUE FALSE FALSE 9525.477391 7019.911109 6482.065978 7310.052767 4391.173252 6048.197638 5104.365482 6549.244049 4880.763313 6777.446233 1.405467054 1.035775256 0.956417175 1.078585136 0.647909714 0.892400682 0.753139945 0.966329178 0.720147847 1 12.72652605 -6.462829938 1.405046472 1.187045553 0.832426116 0 0.205175627 0.288500494 1.131994463 0.030908992 0.052816416 3.44E-07 6.462829938 -0.354619436 S(ph)KSLKEGLTVQER ddPTM_HeLa_CUDC101_4h_R1 1 SKSLKEGLTVQER 13 2 A0A494BZV2;Q6WCQ1-2;J3KSW8;Q6WCQ1-3;H0Y2S9;H7C3G6;J3QL44 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.95)KS(0.05)LKEGLTVQER 81.239 0.024117 150040000 2916.5 3529.9 3281.4 3737.9 4991.3 4086.8 4037 3770.4 4009.1 3470 TRUE FALSE FALSE 2574.632291 3638.652035 3458.80241 3890.347719 4623.101743 4008.851099 4192.708442 4199.607096 3843.843201 3449.360286 0.746408632 1.054877349 1.002737355 1.12784615 1.340278011 1.162201326 1.215503193 1.217503174 1.11436408 1 11.75211311 -6.462561737 1.474358543 0.885340877 1.226671039 0.468629867 0.112036239 0.178329214 0.77003496 0.018866873 0.031932509 3.45E-07 6.462561737 0.341330162 LTEDLEYHELLDR ddPTM_HeLa_CUDC101_4h_R1 4 LTEDLEYHELLDR 13 0 P22059;H0YCV6 P22059 OSBP Oxysterol-binding protein 1 0 0 ;;; ;;; 261.38 5.85E-70 41922900 23391.3 18395.8 19260.2 18856.1 21673 20891.6 18812.5 17419 19369.9 17376.2 FALSE FALSE TRUE 20649.40727 18962.55279 20301.46467 19625.13326 20074.22597 20493.12754 19538.10443 19401.90855 18571.46452 17272.84559 1.195483811 1.097824484 1.175339904 1.136184143 1.162184069 1.186436099 1.131145666 1.123260695 1.075182686 1 14.07621816 -9.391877286 0.987842956 0.995108666 1.154030252 0.583880588 0.036239739 0.200685613 0.332649904 0.023596122 0.005336218 4.06E-10 9.391877286 0.158921585 MIS(ph)VFY(ph)T(ph)AVT(ph)PMLNPIIYS(ph)LR ddPTM_HeLa_CUDC101_4h_R1 1 MISVFYTAVTPMLNPIIYSLR 21 0 Q8NGH3 Q8NGH3 OR2D3 Olfactory receptor 2D3 5 0 MIS(1)VFY(1)T(1)AVT(0.999)PMLNPIIY(0.455)S(0.547)LR 46.106 0.02392 13943000 3666.4 2285.6 2597.2 2277.6 2363.7 2882.3 2294.5 1612.8 3115 2424.1 TRUE FALSE FALSE 3236.63015 2356.016627 2737.612488 2370.490373 2189.33456 2827.32493 2382.999634 1796.394633 2986.598382 2409.681345 1.34317766 0.977729537 1.136089008 0.983736035 0.908557708 1.17331901 0.988927286 0.745490534 1.239416318 1 11.23462666 -6.461105932 1.499137016 1.155803811 0.967346532 0.297353522 0.138506352 0.475317127 2.121295192 0.028003292 0.047275556 3.46E-07 6.461105932 -0.188457279 LTEMETLQSQLMAEK ddPTM_HeLa_CUDC101_4h_R1 2 LTEMETLQSQLMAEK 15 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 134.18 0.00094012 7433100 1197.43 950.01 779.66 839.55 947.99 897.35 720.25 1048.63 1124.56 1247.07 FALSE FALSE TRUE 1057.069071 979.2786821 821.8107779 873.7904778 878.0586664 880.2345438 748.0302838 1168.0018 1078.205161 1239.652372 0.852714111 0.789962335 0.662936478 0.704867346 0.708310399 0.710065631 0.603419394 0.942201077 0.869764125 1 10.2757199 -7.774761422 0.742669612 0.975633662 0.712449675 0.431554212 0.091882571 0.26238471 0.317417596 0.02569997 0.021655469 1.68E-08 7.774761422 -0.263183987 S(ph)MDLVADETK ddPTM_HeLa_CUDC101_4h_R1 1 SMDLVADETK 10 0 F5GZI3 F5GZI3 PARD3 1 0 S(1)MDLVADETK 125.54 0.0034816 5236500 2077.8 1837.2 1487.3 1204.7 1281.1 1404.2 1328.5 921.5 1865.1 1791.7 TRUE FALSE FALSE 1834.243434 1893.801954 1567.707937 1253.832873 1186.595805 1377.417225 1379.74069 1026.399835 1788.219789 1781.042889 1.029870446 1.063310696 0.880219082 0.703988029 0.666236514 0.773376786 0.774681339 0.576291476 1.004029605 1 10.79850654 -6.460917398 2.952918885 1.017911458 0.70516855 0.881657522 0.056155114 0.062073006 1.068347609 0.008625069 0.013358711 3.46E-07 6.460917398 -0.312742908 EVAATEEDVTRLPSPT(ph)SPFSSLSQDQAATSK ddPTM_HeLa_CUDC101_4h_R1 1 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 E9PMS6 LMO7 LIM domain only protein 7 1 0 EVAATEEDVTRLPS(0.052)PT(0.299)S(0.299)PFS(0.087)S(0.113)LS(0.148)QDQAATSK 91.66 8.40E-08 58658000 1160.7 1474.5 821.55 1448.5 1547.3 1598.7 1363.6 1206.6 1445 1081.9 TRUE FALSE FALSE 1024.644506 1519.927597 865.9654781 1507.576091 1433.158762 1568.207461 1416.194509 1343.954467 1385.436488 1075.464811 0.952745729 1.413275062 0.805201127 1.401790255 1.332594751 1.458167153 1.316820871 1.249649875 1.288221125 1 10.07074461 -6.460729327 0.922141561 0.983312616 1.363424956 0.136895627 0.196323281 0.335860013 0.569345854 0.030629526 0.058821944 3.46E-07 6.460729327 0.38011234 LTEVQDDKEEEEEENPLLVPLEEK ddPTM_HeLa_CUDC101_4h_R1 2 LTEVQDDKEEEEEENPLLVPLEEK 24 1 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 0 0 ; ; 130.71 9.47E-09 36298000 8151.7 6765.5 6794 6746 7284.5 7564.3 6875.6 7444.8 7787.8 7639.8 FALSE FALSE TRUE 7196.170083 6973.937036 7161.304191 7021.131039 6747.136948 7420.02358 7140.794195 8292.285939 7466.783588 7594.35813 0.947567913 0.918304999 0.942976887 0.92451935 0.888440712 0.977044202 0.940276199 1.091900829 0.983201406 1 12.89071232 -4.256762985 24.78687772 0.958036593 1.09190089 0.619133459 0.033095161 276.1709597 1463766.059 0.005445185 0.058890736 5.54E-05 4.256762985 0.133864297 CDILVQEELLAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 5 CDILVQEELLASPK 14 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK;CDILVQEELLAS(1)PK ;;;; 181.69 8.26E-11 96326300 21023.4 16887 15218.4 15185.7 14652.7 15151.9 13094.2 11513.4 19513.8 19784.4 TRUE FALSE FALSE 18559.06892 17407.26845 16041.15274 15805.03848 13571.79951 14862.90275 13599.24768 12824.03892 18709.4329 19666.72151 0.943678839 0.885112877 0.81564956 0.803643784 0.690089576 0.75573871 0.691485242 0.652067957 0.951324444 1 14.26346886 -6.460201172 0.552662472 0.992292412 0.663055201 0.938824074 0.028757149 0.114418392 0.070113943 0.006796092 0.015867341 3.47E-07 6.460201172 -0.329237211 T(ph)ETPPPLASLNVSK ddPTM_HeLa_CUDC101_4h_R1 1 TETPPPLASLNVSK 14 0 K7ELG9;Q3MHD2;Q3MHD2-2 K7ELG9 LSM12 Protein LSM12 homolog 1 0 T(0.74)ET(0.26)PPPLASLNVSK 103.13 0.029089 52646000 2420.5 1749.7 1750.6 1724.2 1843 1945.1 1402.2 1443.4 1956.7 2119.4 TRUE FALSE FALSE 2136.772659 1803.606183 1845.242731 1794.520329 1707.045562 1908.000458 1456.283324 1607.710822 1876.043998 2106.793715 1.014229654 0.856090547 0.875853539 0.851777901 0.810257573 0.905641803 0.691232043 0.76310785 0.890473512 1 11.04083335 -6.459090027 0.564336092 1.01529352 0.757364785 0.490311381 0.066488475 0.310079379 0.197884569 0.014569549 0.03381513 3.47E-07 6.459090027 -0.257928735 LTGEVVALK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LTGEVVALKK 10 1 G3V5T9;P24941;G3V317;E7ESI2;P24941-2 G3V5T9 CDK2 Cyclin-dependent kinase 2 0 1 ; LTGEVVALK(1)K;LTGEVVALK(1)K 142.43 0.00058596 1262230 1718.32 892.85 947.47 954.78 2252.76 1388.33 1189.58 1228.89 1814.21 1616.53 FALSE TRUE FALSE 1516.901134 920.3576502 998.6930941 993.7200553 2086.578383 1361.849918 1235.462499 1368.78187 1739.427496 1606.914808 0.943983544 0.572748254 0.621497225 0.618402451 1.298499692 0.84749354 0.768841318 0.851807366 1.082464041 1 10.65007773 -7.492418678 21.71322445 0.975287416 0.800333386 0.193193616 0.195706117 117.5962042 83830.2017 0.034709635 0.037976942 3.22E-08 7.492418678 -0.17495403 LTGIKHELQANCYEEVKDR ddPTM_HeLa_CUDC101_4h_R1 2 LTGIKHELQANCYEEVKDR 19 2 P23528;G3V1A4;E9PP50;E9PK25 P23528 CFL1 Cofilin-1 0 0 ; ; 57.973 0.012479 110171000 7794.9 8252.5 8537.7 8378.2 12046.8 9742.5 9836.7 11956.7 10101.4 2152.52 FALSE FALSE TRUE 6881.193638 8506.749743 8999.273887 8719.89921 11158.13156 9556.678045 10216.10481 13317.8024 9685.016016 2139.716715 3.215936759 3.975642982 4.205824922 4.075258723 5.214770481 4.466328639 4.774512785 6.224096069 4.526307594 1 11.06320409 -7.843592807 0.241396785 1.27E-13 6.041106181 0.213501208 1.152839983 0.377480598 0.076722395 0.904208055 0.616087493 1.43E-08 7.843592807 6.041106181 LTGQQVAIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 LTGQQVAIKK 10 1 Q13164-3;Q13164;S4R3I1;J3KT61;C9JUK9 Q13164-3 MAPK7 Mitogen-activated protein kinase 7 0 1 LTGQQVAIK(1)K 103.22 0.0090273 1192900 779.76 798.95 680.92 803.43 891.08 940.12 674.53 557.25 646.78 707.34 FALSE TRUE FALSE 688.3577148 823.5647025 717.7325949 836.1973481 825.3468037 922.1887773 700.5468481 620.6850875 620.1194546 703.1327102 0.978986904 1.171279178 1.020764053 1.18924541 1.173813694 1.31154299 0.99632237 0.882742445 0.881937998 1 9.457653201 -7.276064239 24.30810067 0.990077143 1.112646882 0.243453084 0.11804726 664.5013182 1104470.726 0.019528885 0.022388856 5.30E-08 7.276064239 0.122569738 GECSGPATVNNSS(ph)DT(ph)ESIPS(ph)PHTEAAK ddPTM_HeLa_CUDC101_4h_R1 1 GECSGPATVNNSSDTESIPSPHTEAAK 27 0 Q9Y618;A0A384DVL6;C9JQE8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 3 0 GECS(0.007)GPAT(0.071)VNNS(0.334)S(0.54)DT(0.471)ES(0.603)IPS(0.914)PHT(0.061)EAAK 44.712 0.0028088 0 1417.9 1351.8 1052.4 851.06 1208.2 943.86 1103 893 1250.8 924.91 TRUE FALSE FALSE 1251.695911 1393.447356 1109.295927 885.7699054 1119.073493 925.8574431 1145.543079 994.6555104 1199.241495 919.4085942 1.361414195 1.515590962 1.206532041 0.963412688 1.217166666 1.007014127 1.245956462 1.081842737 1.30436185 1 9.844562342 -6.458523986 24.99443375 1.2089137 1.109312944 0.183577481 0.152601785 511.7273816 198746.9348 0.029227719 0.04464606 3.48E-07 6.458523986 -0.099600756 PTTQQS(ph)PQDEQEK ddPTM_HeLa_CUDC101_4h_R1 2 PTTQQSPQDEQEK 13 0 Q96QK1;I3L4S0;A0A1W2PP10;A0A3B3ITD4 Q96QK1 VPS35 Vacuolar protein sorting-associated protein 35 1 0 PTTQQS(1)PQDEQEK;PT(0.005)T(0.046)QQS(0.949)PQDEQEK ; 210.08 9.71E-24 16033700 4670.9 3519.5 3372.5 3521.9 2605.2 3040.9 2792.9 2256.1 3222.6 4516.8 TRUE FALSE FALSE 4123.384183 3627.931623 3554.827551 3665.538305 2413.019586 2982.899899 2900.623089 2512.925305 3089.763064 4489.933873 0.918361896 0.808014489 0.791732719 0.816390265 0.537428758 0.664352746 0.64602802 0.559679803 0.688153356 1 12.13247848 -6.45761379 0.510417775 0.989349022 0.566105628 0.403917308 0.11007033 0.221391484 0.116212428 0.016254345 0.03895096 3.49E-07 6.45761379 -0.423243393 WLDDLLAS(ph)PPPSGGGAR ddPTM_HeLa_CUDC101_4h_R1 3 WLDDLLASPPPSGGGAR 17 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(0.999)PPPS(0.001)GGGAR;WLDDLLAS(1)PPPSGGGAR ;; 205.98 1.50E-23 140821000 6548.26 5989.1 4929.56 4776.24 6072.19 5356.19 4630.55 4564.31 6293.96 6271.97 TRUE FALSE FALSE 5780.682889 6173.617072 5196.066925 4971.035712 5624.256641 5254.0296 4809.151865 5083.892601 6034.520305 6234.664044 0.927184344 0.990208459 0.833415704 0.797322146 0.90209458 0.842712544 0.771357018 0.815423664 0.967898232 1 12.60609611 -6.457070114 0.309082205 1.004751836 0.760340926 0.67748845 0.04512197 0.851009957 0.181950286 0.032298678 0.077541025 3.49E-07 6.457070114 -0.24441091 LTK(ac)LTEK ddPTM_HeLa_CUDC101_4h_R1 2 LTKLTEK 7 1 P23526-2;P23526 P23526-2 AHCY Adenosylhomocysteinase 0 1 ; LTK(1)LTEK;LTK(1)LTEK 96.668 0.023449 6702000 7972.3 4961.6 4649.7 5863.1 5469.8 5862.3 4981.8 5343.4 4568.6 3625.1 FALSE TRUE FALSE 7037.799079 5114.461015 4901.076847 6102.22256 5066.303751 5750.486395 5173.949695 5951.671057 4380.280374 3603.537744 1.953024938 1.419288871 1.360073682 1.693397709 1.405924986 1.595789139 1.435797281 1.651618903 1.215550019 1 11.81519824 -9.584291737 1.380041255 1.000926743 1.603138975 0.484535941 0.181277108 0.25518523 0.873726108 0.141399783 0.033154745 2.60E-10 9.584291737 0.602212232 EDENDAS(ph)DDEDDDEKRR ddPTM_HeLa_CUDC101_4h_R1 2 EDENDASDDEDDDEKRR 17 2 Q9Y5B6-3;Q9Y5B6-4;Q9Y5B6-2;Q9Y5B6 Q9Y5B6-3 PAXBP1 PAX3- and PAX7-binding protein 1 1 0 EDENDAS(1)DDEDDDEKRR;EDENDAS(1)DDEDDDEKRR ; 86.625 0.0035905 51689000 7074.1 5163.9 5265.4 4844.9 4041.1 4838 4309 3755 5475.2 6126.8 TRUE FALSE FALSE 6244.884722 5322.993638 5550.063451 5042.495963 3742.996104 4745.723211 4475.199573 4182.454022 5249.509939 6090.357521 1.025372435 0.874003475 0.91128697 0.827947447 0.614577402 0.77921915 0.734800799 0.686733744 0.861937895 1 12.57231121 -6.456850661 1.067024341 1.011516987 0.708536214 0.661407547 0.072488029 0.123480296 0.280050428 0.009723682 0.017856315 3.49E-07 6.456850661 -0.302980773 LTLDK(ac)LDVK ddPTM_HeLa_CUDC101_4h_R1 2 LTLDKLDVK 9 1 P00558 P00558 PGK1 Phosphoglycerate kinase 1 0 1 ; LTLDK(1)LDVK;LTLDK(1)LDVK 120.68 0.001613 4277790 1171.08 502.59 437.09 372.11 857.93 607.32 713.39 868.97 616.63 207.368 FALSE TRUE FALSE 1033.807778 518.0742022 460.7204075 387.2862542 794.6422131 595.7363829 740.9056913 967.8900323 591.2122504 206.1345659 5.01520826 2.513281554 2.235046827 1.878803065 3.854968281 2.890036323 3.594281667 4.695428096 2.868088851 1 7.687442635 -9.605383758 1.414557072 1.003535462 3.484346474 0.115956051 1.1164126 0.3364351 1.2109883 0.783870753 0.181902862 2.48E-10 9.605383758 2.480811012 LTLEDLEDSWDR ddPTM_HeLa_CUDC101_4h_R1 2 LTLEDLEDSWDR 12 0 Q6P2Q9;I3L3Z8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 ; ; 315.5 1.85E-142 61695000 4557.2 3313.8 3001.3 3195.2 4258.8 3795.1 3334.2 2821 3545.2 3753.1 FALSE FALSE TRUE 4023.011924 3415.89425 3163.559356 3325.514067 3944.636809 3722.714791 3462.801211 3142.131237 3399.065355 3730.776394 1.078331023 0.915598763 0.847962735 0.891373193 1.0573233 0.997839162 0.928171738 0.842219127 0.911087934 1 11.86526018 -7.252200929 24.62077277 1.03698965 0.929389772 0.089323657 0.074730794 457.4585932 1219142.591 0.011715902 0.014239674 5.59E-08 7.252200929 -0.107599877 GGQGDPAVPAQQPADPST(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 GGQGDPAVPAQQPADPSTPER 21 0 H0Y704;O15231-2;O15231-3;H7BZT5;O15231-9;O15231-5;O15231-4;O15231-7;O15231;O15231-8;O15231-6 H0Y704 ZNF185 Zinc finger protein 185 1 0 GGQGDPAVPAQQPADPS(0.103)T(0.897)PER;GGQGDPAVPAQQPADPS(0.005)T(0.995)PER ; 262.98 5.30E-72 182401000 7351.6 6408.4 5734.2 5011.4 5812 5324.8 5654.7 4946 6295.1 6274.8 TRUE FALSE FALSE 6489.856592 6605.835208 6044.208197 5215.786553 5383.260339 5223.238312 5872.803673 5509.032648 6035.613314 6237.477211 1.040461772 1.059055606 0.969014875 0.8362013 0.863050903 0.837395975 0.941535091 0.883214874 0.967636932 1 12.60674692 -6.456490349 4.379519173 1.022500134 0.87440402 0.784910665 0.035900584 0.068341104 2.563088936 0.005297733 0.008091761 3.50E-07 6.456490349 -0.148096114 STS(ph)LNERPK ddPTM_HeLa_CUDC101_4h_R1 1 STSLNERPK 9 1 P49815;X5D2U8;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4 P49815 TSC2 Tuberin 1 0 S(0.002)TS(0.998)LNERPK 122.69 0.025241 27852000 6676 4567.7 5463.6 6034.6 7005.2 6900.4 6555.7 4374.4 4546.7 4757.1 TRUE FALSE FALSE 5893.4494 4708.425423 5758.978742 6280.717072 6488.440352 6768.786367 6808.555545 4872.364014 4359.283102 4728.804558 1.246287371 0.995690426 1.21785087 1.328182841 1.37211007 1.431394824 1.439804809 1.030358509 0.921857321 1 12.2072598 -6.456466617 3.626121883 1.110127511 1.335083549 0.439033835 0.139603456 0.198735289 5.120128877 0.021821428 0.033483592 3.50E-07 6.456466617 0.224956039 EETGDEEDGS(ph)PIALHR ddPTM_HeLa_CUDC101_4h_R1 2 EETGDEEDGSPIALHR 16 0 P79522-2 P79522-2 1 0 EETGDEEDGS(1)PIALHR;EETGDEEDGS(1)PIALHR ; 121.51 8.24E-05 10280000 3040.3 2577.9 2184.28 2131.59 2258.07 2296.21 2025.7 1882.65 2663.4 2302.4 TRUE FALSE FALSE 2683.920643 2657.322043 2302.368784 2218.525454 2091.496675 2252.41362 2103.831928 2096.963266 2553.613525 2288.705222 1.172680788 1.161059108 1.005969996 0.969336475 0.913834012 0.984143173 0.919223632 0.91622252 1.115745925 1 11.16031595 -6.455854197 3.090212922 1.089686435 0.94017671 0.70662225 0.051054895 0.170369899 3.196925426 0.011548658 0.017863804 3.50E-07 6.455854197 -0.149509724 ELESPLT(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 2 ELESPLTPGK 10 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 ELES(0.03)PLT(0.97)PGK;ELES(0.002)PLT(0.998)PGK ; 134.75 0.0086562 105163000 10444.6 8872.8 8035.9 7032.5 7736 7424.5 6838.5 6533 9336.5 9467.6 TRUE FALSE FALSE 9220.299821 9146.160451 8470.345061 7319.315747 7165.330692 7282.890033 7102.263236 7276.690313 8951.645518 9411.286294 0.979706656 0.971828947 0.900019912 0.77771683 0.761355087 0.773846402 0.754653829 0.773187648 0.951160685 1 13.2001762 -6.454612419 1.887461243 0.99018973 0.76332879 0.977533662 0.014892253 0.020744161 0.146290162 0.001659582 0.002703224 3.51E-07 6.454612419 -0.22686094 LTLYDIAHTPGVAADLSHIETK ddPTM_HeLa_CUDC101_4h_R1 1 LTLYDIAHTPGVAADLSHIETK 22 0 P40926;P40926-2 P40926 MDH2 "Malate dehydrogenase, mitochondrial" 0 0 136.14 2.84E-07 14604000 4172.5 3022.1 3176.6 2968.2 3431.4 3750.2 2828.6 2742.7 3078.7 3268.8 FALSE FALSE TRUE 3683.405875 3115.207319 3348.336605 3089.256026 3178.272458 3678.671183 2937.70005 3054.917882 2951.794683 3249.357032 1.133579917 0.958714997 1.030461279 0.950728404 0.978123495 1.132122801 0.904086569 0.940160731 0.908424237 1 11.66593856 -7.239827244 24.91543585 1.06307941 0.987642975 0 0.081915663 980.081587 1129882.842 0.012383203 0.015159588 5.76E-08 7.239827244 -0.075436434 LTNSMMMHGR ddPTM_HeLa_CUDC101_4h_R1 1 LTNSMMMHGR 10 0 M0R0F0;M0R0R2;P46782 M0R0F0 RPS5 "40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed" 0 0 63.216 0.033431 7388200 412.12 268.03 411.6 400.52 349.21 448.01 280.99 347.38 171.83 436.15 FALSE FALSE TRUE 363.8119183 276.2876866 433.852341 416.8549368 323.449474 439.4649557 291.8278784 386.924335 164.7470947 433.5557604 0.839135243 0.637259868 1.000684066 0.96147941 0.746038926 1.013629609 0.673103451 0.892444226 0.379990557 1 8.760073743 -9.082109302 0.940888338 0.996813748 0.845770903 0 0.22897982 0.711152632 1.173585775 0.068745636 0.022317304 8.28E-10 9.082109302 -0.151042845 NLAPHHAS(ph)PDPPAPPASASDPHR ddPTM_HeLa_CUDC101_4h_R1 2 NLAPHHASPDPPAPPASASDPHR 23 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;Q9Y618-2 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 NLAPHHAS(0.998)PDPPAPPAS(0.001)AS(0.001)DPHR;NLAPHHAS(0.724)PDPPAPPAS(0.037)AS(0.24)DPHR ; 71.434 0.0015339 96641000 6057.1 3685.24 4650.9 3836.9 4612.4 3927.1 3614 2881.05 5245.9 5615.6 TRUE FALSE FALSE 5347.09592 3798.777876 4902.341722 3993.385366 4272.152441 3852.19711 3753.393191 3209.017086 5029.661782 5582.198161 0.957883573 0.680516486 0.878209906 0.715378647 0.765317231 0.690086056 0.672386232 0.574866207 0.901018136 1 12.44661762 -6.453773996 0.384692136 1.018843136 0.583746282 0.681556281 0.075760247 0.441024656 0.136676066 0.030270865 0.07539209 3.52E-07 6.453773996 -0.435096854 LTPATK(ac)MNNK ddPTM_HeLa_CUDC101_4h_R1 2 LTPATKMNNK 10 1 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 0 1 ; LTPATK(1)MNNK;LTPATK(1)MNNK 142 0.00064221 3115400 2104.83 1325.63 672.99 1333.85 770.77 1068.43 855.64 512.63 613.3 311.08 FALSE TRUE FALSE 1858.105018 1366.471089 709.3738751 1388.250168 713.9118327 1048.051478 888.6423214 570.9857271 588.0195144 309.2296823 6.008818442 4.41895189 2.294003182 4.489381996 2.30867822 3.38923311 2.873729051 1.846477747 1.901562327 1 8.272534997 -5.725344114 24.98653962 3.489140626 2.679808351 0.057600866 1.404687124 559.1320076 387050.0822 0.283966295 0.567918428 1.88E-06 5.725344114 -0.809332275 LTPEEEEILNK ddPTM_HeLa_CUDC101_4h_R1 2 LTPEEEEILNK 11 0 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 0 0 ; ; 157.66 0.0009014 29151000 1738.1 1277.71 1452.96 1544.66 1608.39 1686.24 1617.84 1668.96 1402.9 1358.01 FALSE FALSE TRUE 1534.362553 1317.074731 1531.511413 1607.657911 1489.742274 1654.077781 1680.240631 1858.94766 1345.071868 1349.932496 1.136621688 0.975659697 1.134509627 1.190917261 1.103567977 1.22530407 1.244684927 1.377067124 0.996399355 1 10.39867155 -1 0.26027075 1.035542016 3.208370981 0.78822563 0.055529357 18.01726056 0.226947088 0.030129514 17.58861025 0.1 1 2.172828964 LTPEELER ddPTM_HeLa_CUDC101_4h_R1 1 LTPEELER 8 0 Q5H8X8;O95399;O95399-2 Q5H8X8 UTS2 Urotensin-2 0 0 123.98 0.037154 37416000 1465.7 2304.8 2946.9 2819.5 2583.9 1883.1 1365.1 1611.7 4210.4 3969.9 FALSE FALSE TRUE 1293.892868 2375.808156 3106.218328 2934.491397 2393.290845 1847.183005 1417.752364 1795.169413 4036.84553 3946.286858 0.32787603 0.602036355 0.787124312 0.743608233 0.606466517 0.46808128 0.359262369 0.454900892 1.022947818 1 11.94628012 -9.49201015 1.208957569 1.002604381 0.52948618 0.626911606 0.143399966 0.303877362 0.787762059 0.120292315 0.028629478 3.22E-10 9.49201015 -0.473118201 LTPIHDR ddPTM_HeLa_CUDC101_4h_R1 2 LTPIHDR 7 0 I3L3X7;A0A087X2I4;P28072 I3L3X7 PSMB6 Proteasome subunit beta type;Proteasome subunit beta type-6 0 0 ; ; 123.69 0.010647 17192300 17513.7 11123.7 15653.9 16949.2 13218.4 12882.6 13558.3 9452.7 15107.6 15265.6 FALSE FALSE TRUE 15460.77064 11466.40801 16500.19718 17640.46164 12243.30497 12636.88587 14081.24817 10528.75716 14484.85833 15174.79953 1.018845132 0.755621713 1.087342021 1.162483998 0.806818234 0.832754716 0.927936355 0.693831713 0.954533752 1 13.88938984 -3.120422368 0.491297614 1.003360424 1.00E-16 0.30679244 0.118526728 9.531124904 0.674563718 0.023539045 7.127758883 0.00075784 3.120422368 -1.003360424 LTPLPEDNSMNVDQDGDPSDR ddPTM_HeLa_CUDC101_4h_R1 2 LTPLPEDNSMNVDQDGDPSDR 21 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 0 ; ; 147.39 3.08E-06 14174200 4630.2 2760.3 2396.31 2655.3 3084.24 2900.33 2604.2 2214.71 3159.87 3076.76 FALSE FALSE TRUE 4087.454975 2845.341571 2525.861767 2763.594611 2856.72176 2845.011038 2704.644866 2466.823634 3029.618821 3058.459295 1.336442496 0.930318601 0.825860842 0.90359045 0.93403949 0.930210529 0.884316123 0.806557615 0.990570261 1 11.57858936 -7.102959256 7.141548236 1.158563234 0.885957946 0.493850487 0.099803988 0.159742324 9.745852327 0.021286823 0.026131102 7.89E-08 7.102959256 -0.272605288 DS(ph)YVGDEAQSK ddPTM_HeLa_CUDC101_4h_R1 2 DSYVGDEAQSK 11 0 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;C9JUM1;C9JZR7;C9JTX5;P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65 P60709;P63267;P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 DS(1)YVGDEAQSK;DS(1)YVGDEAQSK ; 119.17 0.0044219 24729000 4973.8 3801.1 3255.12 2988.3 3507 2976.13 2640.1 2331.89 3937.4 4072.5 TRUE FALSE FALSE 4390.778704 3918.207386 3431.101633 3110.175791 3248.295597 2919.365279 2741.929541 2597.342932 3775.098705 4048.276589 1.084604425 0.967870475 0.847546248 0.768271565 0.802389739 0.721137801 0.677307857 0.641592261 0.932519956 1 11.98309215 -6.45365913 1.096496293 1.041818448 0.697680374 0.852738283 0.0538251 0.102096231 0.244438141 0.009261273 0.016903399 3.52E-07 6.45365913 -0.344138074 TVS(ph)PPIR ddPTM_HeLa_CUDC101_4h_R1 1 TVSPPIR 7 0 Q9UHB6-4;Q9UHB6-5;Q9UHB6;F8VQE1;Q9UHB6-2;F8VS07;Q9UHB6-3 Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 1 0 TVS(1)PPIR 88.177 0.016419 11811000 15558 14151 12717 12206 12892 13562 11556 12526 13634 14113 TRUE FALSE FALSE 13734.31482 14586.97554 13404.51949 12703.81344 11940.98284 13303.32745 12001.71879 13951.90921 13072.00075 14029.05525 0.978990715 1.039768914 0.955482693 0.905535919 0.851160868 0.94826966 0.855490165 0.994500981 0.931780545 1 13.77613024 -6.450398174 3.952714748 0.993737869 0.907205835 0.373269747 0.046344645 0.13708707 4.112600822 0.005965106 0.009144704 3.54E-07 6.450398174 -0.086532034 QDPVVHLS(ph)PNK ddPTM_HeLa_CUDC101_4h_R1 2 QDPVVHLSPNK 11 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 QDPVVHLS(1)PNK;QDPVVHLS(1)PNK ; 80.545 0.024575 92757000 19922 17079.2 15561.3 15318 15510.7 15667.1 14167.8 14969.2 17780.9 17694.6 TRUE FALSE FALSE 17586.77336 17605.38991 16402.59095 15942.73425 14366.50656 15368.27617 14714.25679 16673.23322 17047.96378 17589.35173 0.999853413 1.000911812 0.932529589 0.90638555 0.816772942 0.873726127 0.836543439 0.9479163 0.969220699 1 14.10241469 -6.447608078 1.871115526 1.0004244 0.867723392 0.713222504 0.03467502 0.107225227 0.742419357 0.004987354 0.008157445 3.57E-07 6.447608078 -0.132701007 S(ph)PSSDSWTCADTSTERR ddPTM_HeLa_CUDC101_4h_R1 1 SPSSDSWTCADTSTERR 17 1 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHH7;Q8N6T3-4;H0YIQ0 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 S(0.948)PS(0.031)S(0.01)DS(0.01)WTCADTSTERR 109.99 0.0022124 7850100 572.75 724.42 674.82 835.31 931.57 1013.2 866.56 845.1 1026.5 661.6 TRUE FALSE FALSE 505.6131132 746.7385216 711.3028104 869.3775523 862.849937 993.8748981 899.9835095 941.302768 984.1872355 657.6647738 0.768800662 1.135439439 1.081558324 1.321915947 1.311990503 1.511218082 1.368453269 1.431280503 1.496487686 1 9.361208588 -6.447368804 1.192255859 0.895166571 1.419385836 0.158586463 0.209156953 0.132465337 0.374525868 0.019129165 0.034237649 3.57E-07 6.447368804 0.524219265 ETEEQDSDS(ph)AEQGDPAGEGK ddPTM_HeLa_CUDC101_4h_R1 1 ETEEQDSDSAEQGDPAGEGK 20 0 H0Y626;O95361 H0Y626 TRIM16 Tripartite motif-containing protein 16 1 0 ET(0.001)EEQDS(0.45)DS(0.55)AEQGDPAGEGK 218.16 1.51E-26 27043000 4240.2 3131.5 2972.6 3103 2789.8 3075.3 3026 2617.2 3253.7 3080.5 TRUE FALSE FALSE 3743.170184 3227.977803 3133.307748 3229.553752 2584.002012 3016.643776 3142.713834 2915.131469 3119.581109 3062.177049 1.222388557 1.054144732 1.0232288 1.054659381 0.843844745 0.985130425 1.026300499 0.951980053 1.01874616 1 11.58034198 -6.444811856 1.695003562 1.104057379 0.964757363 0.268526404 0.076790413 0.344280455 1.957529719 0.015945415 0.026523492 3.59E-07 6.444811856 -0.139300016 SGSS(ph)PGLR ddPTM_HeLa_CUDC101_4h_R1 2 SGSSPGLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.004)GS(0.331)S(0.665)PGLR;S(0.004)GS(0.343)S(0.652)PGLR ; 126.24 0.006282 265300000 7399 2469.5 8154.8 7960.5 3905.4 3579.6 3532.9 1855.61 8887.3 9505 TRUE FALSE FALSE 6531.700436 2545.582368 8595.673155 8285.163598 3617.306423 3511.325094 3669.165136 2066.845142 8520.961732 9448.463837 0.691297607 0.269417591 0.909742928 0.876879432 0.382845983 0.371629204 0.388334569 0.218749331 0.901835672 1 13.20586407 -6.442184932 0.164309236 1.179085056 1.24E-14 0.530089482 0.197583413 3.978452876 0.342991865 0.791715973 1.473787152 3.61E-07 6.442184932 -1.179085056 ENT(ph)S(ph)SLGYEY(ph)TGSK ddPTM_HeLa_CUDC101_4h_R1 1 ENTSSLGYEYTGSK 14 0 C9JU94;C9JGT0;X6RE50;Q86VW1-3;Q86VW1-2;Q86VW1 C9JU94 SLC22A16 Solute carrier family 22 member 16 3 0 ENT(0.999)S(0.457)S(0.397)LGY(0.147)EY(0.502)T(0.303)GS(0.194)K 84.753 0.014725 4811200 465.54 906.9 685.84 849.36 1258.3 1273.9 979 665.83 887.03 788.47 TRUE FALSE FALSE 410.9701069 934.8405141 722.918585 884.000572 1165.477716 1249.60248 1016.760358 741.6253958 850.466248 783.7801454 0.524343605 1.192733089 0.922348683 1.127868035 1.486995713 1.594327807 1.297251996 0.946216104 1.085082664 1 9.614305217 -6.441362806 1.363692257 0.790220885 1.337007897 0.292503156 0.243213167 0.27929465 1.030691446 0.045176003 0.078511153 3.62E-07 6.441362806 0.546787012 T(ph)RS(ph)VEDDEEGHLICQSGDVLSAR ddPTM_HeLa_CUDC101_4h_R1 1 TRSVEDDEEGHLICQSGDVLSAR 23 1 F8WBF5;P49759;P49759-3 F8WBF5 CLK1 Dual specificity protein kinase CLK1 2 0 T(1)RS(1)VEDDEEGHLICQSGDVLSAR 60.234 0.015178 17296000 762.29 805.63 709.02 837.57 964.85 1031.9 1113.8 959.38 900.87 338.61 TRUE FALSE FALSE 672.9355218 830.4505054 747.3517659 871.7297249 893.6749378 1012.218227 1156.759639 1068.591941 863.7357573 336.5959327 1.999238423 2.467203031 2.220323222 2.589840341 2.655037839 3.007220612 3.436641762 3.174702477 2.566090893 1 8.394873933 -6.439767605 0.139602993 5.72E-23 4.88479746 0.390587957 0.506217543 1.071096361 0.075595862 0.913154433 1.578111697 3.63E-07 6.439767605 4.88479746 GGS(ph)SKDLLDNQSQEEQRR ddPTM_HeLa_CUDC101_4h_R1 2 GGSSKDLLDNQSQEEQRR 18 2 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 GGS(0.853)S(0.147)KDLLDNQSQEEQRR;GGS(0.883)S(0.117)KDLLDNQSQEEQRR ; 135.86 6.21E-05 322740000 3070.6 3430.5 3460.4 3387.9 4766 4274.8 4124.6 3234.8 3060.5 3448.6 TRUE FALSE FALSE 2710.668923 3536.189639 3647.479691 3526.073206 4414.421675 4193.265312 4283.687204 3603.036556 2934.344895 3428.087574 0.790723359 1.031534219 1.063998399 1.028583176 1.287721384 1.223208341 1.249585115 1.051033989 0.855971393 1 11.74318825 -6.438262283 1.299515187 0.904876855 1.198967893 0.646109319 0.091007359 0.217543429 0.729393731 0.018425991 0.032430802 3.65E-07 6.438262283 0.294091037 TSTTGVATTQSPT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 TSTTGVATTQSPTPR 15 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 TSTTGVATT(0.001)QS(0.391)PT(0.607)PR 115.58 0.0071971 369600000 4786.6 4099.6 3906.4 3884 4216.5 4040.5 3929.3 3881.4 4400.9 4114.7 TRUE FALSE FALSE 4225.522004 4225.903817 4117.5918 4042.406308 3905.457195 3963.434194 4080.854417 4323.242887 4219.493039 4090.225581 1.033077986 1.033171333 1.006690638 0.988308891 0.954826847 0.969001371 0.997708888 1.056969304 1.031603992 1 11.9979647 -6.438204211 4.281270324 1.017476102 0.990307102 0.207934353 0.026873608 0.322578433 10.71215756 0.004468108 0.00685692 3.65E-07 6.438204211 -0.027169 LKFS(ph)DDEEEEEVVK ddPTM_HeLa_CUDC101_4h_R1 5 LKFSDDEEEEEVVK 14 1 Q5JSZ5;Q5JSZ5-5 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK;LKFS(1)DDEEEEEVVK ;;;; 143.99 0.00022757 415727000 29176.1 24803.2 23613.2 23123.3 20318.7 20294.6 19014.7 18918 24529.9 29143.2 TRUE FALSE FALSE 25756.12179 25567.35719 24889.80102 24066.36812 18819.82998 19907.51432 19748.10335 21071.54865 23518.76714 28969.85495 0.889066301 0.882550404 0.859162086 0.830738302 0.64963494 0.687180324 0.681677674 0.727361207 0.811835861 1 14.82226484 -6.436550346 0.444100405 0.980464744 0.646487974 0.612164341 0.066466823 0.302200708 0.12091883 0.016295055 0.040976204 3.66E-07 6.436550346 -0.33397677 EAASS(ph)PAGEPLR ddPTM_HeLa_CUDC101_4h_R1 4 EAASSPAGEPLR 12 0 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 EAAS(0.071)S(0.929)PAGEPLR;EAAS(0.077)S(0.923)PAGEPLR;EAAS(0.052)S(0.948)PAGEPLR;EAAS(0.05)S(0.95)PAGEPLR ;;; 209.67 2.10E-23 235393000 25015.4 19148 18897.2 18221.2 18153 18745.6 17672.7 17267.3 21869 19830.1 TRUE FALSE FALSE 22083.13273 19737.92718 19918.83979 18964.33929 16813.88936 18388.05891 18354.34196 19232.93964 20967.55056 19712.14968 1.120280288 1.001307696 1.010485417 0.962063479 0.852970864 0.932828697 0.931118232 0.97568961 1.063686655 1 14.2667975 -6.436285199 1.764935156 1.054994395 0.924380591 0.634076673 0.042474546 0.203153681 1.250370229 0.008996717 0.014919566 3.66E-07 6.436285199 -0.130613803 ES(ph)SPIPS(ph)PTSDRK ddPTM_HeLa_CUDC101_4h_R1 1 ESSPIPSPTSDRK 13 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 ES(0.5)S(0.5)PIPS(0.735)PT(0.109)S(0.157)DRK 106.55 0.01091 47953000 3134 2623.6 2555.5 2360.5 2396.6 2512.3 2260 2578.5 2673.8 2838.1 TRUE FALSE FALSE 2766.637271 2704.430006 2693.65806 2456.771393 2219.807593 2464.382063 2347.168957 2872.026017 2563.584832 2821.218855 0.98065319 0.958603407 0.954785218 0.870819146 0.786825733 0.873516799 0.831969825 1.01800894 0.908679888 1 11.46210287 -6.436237923 2.391217817 0.988397611 0.868417211 0.279207765 0.061545415 0.18044699 2.029437051 0.008598377 0.013688219 3.66E-07 6.436237923 -0.119980399 VCLEVS(ph)S(ph)CLS(ph)LCGSS(ph)PFTT(ph)DK ddPTM_HeLa_CUDC101_4h_R1 1 VCLEVSSCLSLCGSSPFTTDK 21 0 H0YES4;E9PJ55;Q9NUJ3 H0YES4 TCP11L1 T-complex protein 11-like protein 1 5 0 VCLEVS(0.998)S(0.998)CLS(0.998)LCGS(0.204)S(0.469)PFT(0.533)T(0.799)DK 43.326 0.034661 7491200 836.66 623.12 671.32 636.63 616.76 584.71 442.05 594.98 837.51 792.06 TRUE FALSE FALSE 738.5879831 642.3175886 707.6135898 662.5945231 571.2628436 573.5576309 459.1000166 662.7101182 802.9874833 787.3487919 0.938069621 0.815798024 0.898729505 0.841551457 0.725552448 0.728467024 0.583096108 0.841698273 1.01986247 1 9.620859074 -6.435881658 0.519089024 0.989396652 0.680654542 0.696614822 0.070352295 0.351658163 0.189589841 0.018681916 0.045471362 3.67E-07 6.435881658 -0.30874211 LTPYEVDELRR ddPTM_HeLa_CUDC101_4h_R1 2 LTPYEVDELRR 11 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 0 ; ; 120.77 0.0042613 26050000 7865.7 6777.6 7663.6 6638.9 7864.9 7116.5 6531.4 7000.3 7314.9 7605.4 FALSE FALSE TRUE 6943.69457 6986.409823 8077.917397 6909.663038 7284.721996 6980.764619 6783.318286 7797.185856 7013.376726 7560.162743 0.918458346 0.92410839 1.068484591 0.913956918 0.963566823 0.923361686 0.897245009 1.031351589 0.927675364 1 12.88420158 VVKPKS(ph)PEPEATLTFPFLDK ddPTM_HeLa_CUDC101_4h_R1 2 VVKPKSPEPEATLTFPFLDK 20 2 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 VVKPKS(0.997)PEPEAT(0.002)LT(0.001)FPFLDK;VVKPKS(0.994)PEPEAT(0.005)LT(0.001)FPFLDK ; 79.462 0.0016821 497440000 13674.3 14041.1 14100.3 13212.8 18549.9 14586.1 15284.3 15483 14964.2 13549 TRUE FALSE FALSE 12071.41928 14473.68965 14862.60487 13751.67509 17181.51083 14307.89444 15873.82057 17245.52214 14347.36934 13468.40995 0.896276497 1.074639821 1.103515926 1.021031818 1.275689625 1.062329889 1.178596481 1.280442324 1.065260814 1 13.71729192 -6.433680258 0.933823136 0.952742407 1.189942376 0.439000923 0.085545375 0.269186245 0.467537584 0.015285248 0.029756611 3.68E-07 6.433680258 0.237199969 AEIKEMLAS(ph)DDEEDVSSKVEK ddPTM_HeLa_CUDC101_4h_R1 1 AEIKEMLASDDEEDVSSKVEK 21 2 E7ETM8;Q0ZGT2-4 E7ETM8 NEXN Nexilin 1 0 AEIKEMLAS(1)DDEEDVSSKVEK 109.28 2.39E-05 20259000 339.48 610.38 471.43 504.84 861.43 605.83 541.95 880.52 485.58 362.77 TRUE FALSE FALSE 299.686669 629.1850843 496.9169318 525.4295573 797.8840251 594.2748021 562.853193 980.7548376 465.5641869 360.6122279 0.831049659 1.744769133 1.37798137 1.457048643 2.212581725 1.647960763 1.560826698 2.719693792 1.29103827 1 8.494304507 -6.43280012 0.643544607 0.902543504 2.074105556 0.490017643 0.375700943 0.361086745 0.297473277 0.081447136 0.184151314 3.69E-07 6.43280012 1.171562052 TGSESPKVCS(ph)DQSSGSGTGK ddPTM_HeLa_CUDC101_4h_R1 1 TGSESPKVCSDQSSGSGTGK 20 1 O15169-2;O15169 O15169-2 AXIN1 Axin-1 1 0 T(0.067)GS(0.016)ES(0.299)PKVCS(0.504)DQS(0.053)S(0.053)GS(0.006)GT(0.001)GK 85.496 0.0014984 49244000 3061.9 3003.6 2864.1 3050.7 3814 3311.9 2924.3 3614 3414.9 2356.8 TRUE FALSE FALSE 2702.988724 3096.137356 3018.941909 3175.120732 3532.648819 3248.731026 3037.091231 4025.403152 3274.136377 2342.781649 1.153751877 1.321564627 1.288614289 1.35527813 1.507886499 1.38669817 1.2963612 1.718215248 1.397542267 1 11.19400678 -6.432487913 0.235305119 0.924408538 1.688117931 0.232848101 0.159606827 1.116068256 0.154682606 0.132345903 0.294101076 3.69E-07 6.432487913 0.763709392 SMSDVS(ph)AEDVQNLR ddPTM_HeLa_CUDC101_4h_R1 1 SMSDVSAEDVQNLR 14 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;E9PJ10;E9PK58;E9PLU6 E9PMS6 LMO7 LIM domain only protein 7 1 0 S(0.001)MS(0.198)DVS(0.801)AEDVQNLR 256.13 7.57E-70 21389000 726.25 365.84 436.61 487.95 489.85 367.13 390.28 293.1 628.69 559.1 TRUE FALSE FALSE 641.1200759 377.1110968 460.2144573 507.8507101 453.7147414 360.1276069 405.3332303 326.4653192 602.7751321 555.7744483 1.153561625 0.678532628 0.828059762 0.913771246 0.816364881 0.647974386 0.72931246 0.587406133 1.08456791 1 9.118355698 -6.431470875 0.638282734 1.070487642 0.66029835 0.597756734 0.114989701 0.391069814 0.316873779 0.030716009 0.069758553 3.70E-07 6.431470875 -0.410189292 GLNVIGASDQS(ph)PLQSPSNLR ddPTM_HeLa_CUDC101_4h_R1 2 GLNVIGASDQSPLQSPSNLR 20 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;Q9HAU0-5;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 GLNVIGAS(0.061)DQS(0.939)PLQSPSNLR;GLNVIGAS(0.009)DQS(0.991)PLQSPSNLR ; 173.09 5.99E-08 37857000 3991.8 4152.4 4062.3 4594.7 5143.7 4826.3 4854.8 4791.3 4142.3 4032.5 TRUE FALSE FALSE 3523.887255 4280.330522 4281.920226 4782.091726 4764.259499 4734.246369 5042.051262 5336.722225 3971.552641 4008.514511 0.879100536 1.067809661 1.068206243 1.192983514 1.188534926 1.181047582 1.257835352 1.331346615 0.99077916 1 11.96885198 -6.431353136 1.080688966 0.943994385 1.248886372 0.833243089 0.05352056 0.145087378 0.337155061 0.011492852 0.021345289 3.70E-07 6.431353136 0.304891986 S(ph)VEDDAEGHLIYHVGDWLQER ddPTM_HeLa_CUDC101_4h_R1 2 SVEDDAEGHLIYHVGDWLQER 21 0 P49760;P49760-3;B1AVT0 P49760 CLK2 Dual specificity protein kinase CLK2 1 0 S(1)VEDDAEGHLIYHVGDWLQER;S(1)VEDDAEGHLIYHVGDWLQER ; 91.618 0.00048129 6909300 1694.16 1370.14 1553.73 1954.64 2188.02 1631.28 1543.86 1844.9 1823.86 1773.44 TRUE FALSE FALSE 1495.573133 1412.352389 1637.729344 2034.358668 2026.614124 1600.166052 1603.407197 2054.915959 1748.679719 1762.8915 0.848363687 0.80115673 0.929001781 1.15398972 1.149596628 0.907694008 0.909532548 1.16565084 0.991938369 1 10.78372797 -6.431249901 10.04988921 0.914404425 1.045720033 0.326048025 0.102479498 0.538630091 56.3800221 0.017199938 0.026275553 3.70E-07 6.431249901 0.131315608 S(ph)PLSQGDSSAPSLPK ddPTM_HeLa_CUDC101_4h_R1 3 SPLSQGDSSAPSLPK 15 0 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 1 0 S(0.996)PLS(0.003)QGDSSAPSLPK;S(0.988)PLS(0.012)QGDSSAPSLPK;S(0.942)PLS(0.058)QGDSSAPSLPK ;; 161.94 5.09E-05 28736700 5697.8 5254.2 4728.4 4296.2 4269.6 4376.3 4934.5 4734.5 6030.5 5292.3 TRUE FALSE FALSE 5029.912521 5416.075674 4984.031607 4471.417606 3954.640114 4292.829369 5124.825318 5273.456342 5781.920238 5260.821164 0.956107871 1.029511459 0.947386625 0.849946703 0.751715367 0.815999867 0.974149312 1.00240175 1.099052801 1 12.36107229 -6.430993504 4.644273007 0.982734806 0.874234075 0.384704555 0.07889129 0.209689432 7.706464022 0.011706564 0.017960024 3.71E-07 6.430993504 -0.108500731 TQTCTSSSLS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 2 TQTCTSSSLSPTK 13 0 A0A2R8YCF6;A0A2R8YD00;R4GN03;A0A2R8Y500;A0A2U3TZI0;Q9BZR9 A0A2R8YCF6 TRIM8 Probable E3 ubiquitin-protein ligase TRIM8 1 0 TQTCTS(0.004)S(0.002)S(0.003)LS(0.895)PT(0.095)K;TQTCT(0.002)S(0.027)S(0.023)S(0.032)LS(0.832)PT(0.084)K ; 172.43 3.88E-07 29185000 4561.5 3632.4 3425 3355.4 3511.6 3360.8 3015.6 3582 3991.2 3595.4 TRUE FALSE FALSE 4026.807885 3744.309939 3610.16586 3492.247715 3252.556264 3296.698339 3131.912702 3989.760401 3826.681047 3574.014401 1.126690448 1.047648252 1.010115085 0.977121893 0.910056843 0.922407682 0.876301086 1.116324657 1.070695475 1 11.80332973 -6.430400977 2.086295063 1.060495609 0.94902336 0.336323181 0.066463048 0.285561712 2.448874408 0.011768808 0.019088377 3.71E-07 6.430400977 -0.111472249 QEPQTS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 QEPQTSR 7 0 A0A3B3ISW0;A0A3B3IRF8 A0A3B3ISW0 1 0 QEPQT(0.313)S(0.687)R 89.886 0.021523 1854100 1151.2 933.39 777.51 829.67 792.2 818.23 768.42 639.46 751.5 888.18 TRUE FALSE FALSE 1016.258081 962.1466396 819.5445424 863.5075287 733.7609843 802.623626 798.0582168 712.2535416 720.5228519 882.8970659 1.151049336 1.08976083 0.928244723 0.978038734 0.831083274 0.909079503 0.903908562 0.806723195 0.816089304 1 9.786101438 -6.429730533 1.629388633 1.0741079 0.875435918 0.179860764 0.098946019 0.180762115 0.948497355 0.011654882 0.01964947 3.72E-07 6.429730533 -0.198671982 SSLGQS(ph)ASET(ph)EEDTVSVSK ddPTM_HeLa_CUDC101_4h_R1 2 SSLGQSASETEEDTVSVSK 19 0 E9PPJ0;Q13435;E9PJ04;H0YCG1 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 2 0 S(0.026)S(0.032)LGQS(0.918)AS(0.221)ET(0.797)EEDT(0.006)VSVSK;SSLGQS(0.993)AS(0.031)ET(0.931)EEDT(0.003)VS(0.015)VS(0.028)K ; 142.23 4.58E-07 0 6740.7 5662.9 5119.1 5146.6 5390.1 5168.2 4643.6 4564.8 5782.9 6022.1 TRUE FALSE FALSE 5950.565364 5837.367237 5395.85403 5356.500594 4992.483062 5069.625196 4822.705207 5084.43838 5544.526414 5986.280281 0.994033872 0.975124278 0.901370096 0.894796158 0.833987523 0.846874011 0.805626362 0.849348534 0.926205616 1 12.54744411 -6.429198059 1.014822216 0.999297975 0.82878442 0.822635689 0.027865384 0.059858375 0.122719347 0.002558101 0.004853348 3.72E-07 6.429198059 -0.170513555 NKPLS(ph)PIKLTPTSVLDYFGTGSVQR ddPTM_HeLa_CUDC101_4h_R1 1 NKPLSPIKLTPTSVLDYFGTGSVQR 25 2 A0A1W2PP02;P35251-2;P35251 A0A1W2PP02;P35251-2 RFC1 Replication factor C subunit 1 1 0 NKPLS(0.383)PIKLT(0.153)PT(0.326)S(0.129)VLDY(0.007)FGT(0.002)GSVQR 65.881 0.0017352 27979000 1277.7 1596.4 1252.2 1329.9 1639.2 1747.7 1461.3 1286.3 1387.4 1403.2 TRUE FALSE FALSE 1127.929943 1645.583192 1319.89772 1384.13907 1518.279482 1714.365534 1517.662831 1432.727193 1330.210785 1394.853704 0.808636733 1.179753251 0.946262476 0.992318453 1.08848654 1.229064761 1.08804445 1.027152302 0.95365613 1 10.4458981 -6.428678313 0.950157568 0.919044513 1.110436674 0.232542501 0.101028647 0.46734003 0.840172058 0.021589259 0.041908595 3.73E-07 6.428678313 0.191392161 KKDELS(ph)DYAEK ddPTM_HeLa_CUDC101_4h_R1 1 KKDELSDYAEK 11 2 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LP59 P46100-4 ATRX Transcriptional regulator ATRX 1 0 KKDELS(1)DYAEK 54.598 0.039069 180620000 9556.2 8065.9 8660.8 9552.9 10509 9073.1 9169.2 9809.3 9457.5 9390.7 TRUE FALSE FALSE 8436.036722 8314.400819 9129.029045 9942.508553 9733.772007 8900.045734 9522.859115 10925.95106 9067.657847 9334.843699 0.903714834 0.890684524 0.977951998 1.065096414 1.042735403 0.953422041 1.02014125 1.170448206 0.971377576 1 13.18841015 -6.42572293 4.849754155 0.947889486 1.042328356 0.43678237 0.058236209 0.205235242 7.854641188 0.009972136 0.015298646 3.75E-07 6.42572293 0.09443887 FLPS(ph)PVVIK ddPTM_HeLa_CUDC101_4h_R1 2 FLPSPVVIK 9 0 H7C399;A0A087WTG3;Q13618-3;Q13618-2;Q13618 H7C399 CUL3 Cullin-3 1 0 FLPS(1)PVVIK;FLPS(1)PVVIK ; 93.258 0.02408 48836000 13988 11249.8 10651.2 10851.5 11029.2 10535.1 10419.3 8785.9 11667 12325.1 TRUE FALSE FALSE 12348.34784 11596.393 11227.03609 11294.07107 10215.59789 10334.16052 10821.17589 9786.051342 11186.08132 12251.78976 1.007881141 0.94650604 0.91635886 0.921830304 0.833804537 0.843481706 0.883232255 0.798744635 0.913016102 1 13.58070489 -6.425436132 0.8488121 1.005633635 0.837582861 0.651592503 0.038436832 0.123799677 0.177578308 0.00469777 0.00953434 3.75E-07 6.425436132 -0.168050774 ASVLDTSMSAGS(ph)GSPSK ddPTM_HeLa_CUDC101_4h_R1 2 ASVLDTSMSAGSGSPSK 17 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 ASVLDT(0.005)S(0.017)MS(0.084)AGS(0.55)GS(0.328)PS(0.017)K;ASVLDTS(0.001)MS(0.007)AGS(0.699)GS(0.288)PS(0.005)K ; 90.259 0.013721 117873000 14258.1 12967.2 11752.4 11875.8 12715 10988.7 11056.2 10634.2 13547.7 13971.1 TRUE FALSE FALSE 12586.78713 13366.70406 12387.77029 12360.14646 11777.03978 10779.10886 11482.64134 11844.75434 12989.25807 13887.99928 0.906306724 0.96246434 0.891976594 0.88998755 0.848001181 0.776145551 0.826803135 0.852876941 0.935286488 1 13.76155116 -6.425328866 0.175539804 1.042264048 0.726227092 0.669279545 0.036262236 2.090170755 0.193576468 0.107927137 0.209807653 3.76E-07 6.425328866 -0.316036957 ASS(ph)PAESS(ph)PEDSGYMR ddPTM_HeLa_CUDC101_4h_R1 1 ASSPAESSPEDSGYMR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 2 0 AS(0.002)S(0.998)PAES(0.031)S(0.969)PEDSGYMR 184.87 8.77E-10 15321000 1316.6 1265.4 1287.1 1595 1589.7 1351 1423.7 1597.9 1432.2 1493.4 TRUE FALSE FALSE 1162.270144 1304.385474 1356.684519 1660.050994 1472.430998 1325.231926 1478.612586 1779.798477 1373.16411 1484.51719 0.782928046 0.87865973 0.913889397 1.118243025 0.991858503 0.892702311 0.996022542 1.198907287 0.924990373 1 10.53577808 -6.422724745 7.466743295 0.893356665 1.026099275 0.365811613 0.091118746 0.299962296 19.82654454 0.016962881 0.025929599 3.78E-07 6.422724745 0.13274261 TSDLRDEAS(ph)SVTR ddPTM_HeLa_CUDC101_4h_R1 1 TSDLRDEASSVTR 13 1 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 TSDLRDEAS(0.734)S(0.265)VT(0.001)R 64.588 0.037184 27450000 4825.4 4018.8 3010.1 3245 2771.3 3012.6 2772.1 2425 4173 3709.3 TRUE FALSE FALSE 4259.773927 4142.614465 3172.835111 3377.345126 2566.86672 2955.139674 2879.020826 2701.052198 4000.987174 3687.236919 1.155275351 1.123501027 0.860491252 0.915955552 0.696149116 0.801450989 0.780807116 0.732540994 1.085090886 1 11.8483244 -6.421464115 1.68888507 1.078377372 0.767277432 0.819810749 0.06744148 0.127296529 0.71652836 0.013076667 0.021985805 3.79E-07 6.421464115 -0.31109994 RTS(ph)TPVIMEGVQEETDTR ddPTM_HeLa_CUDC101_4h_R1 1 RTSTPVIMEGVQEETDTR 18 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 RT(0.154)S(0.423)T(0.423)PVIMEGVQEETDTR 94.456 0.0019716 6605500 1729.4 1429.7 1400.2 1210.7 1106.6 1536.5 1419.8 1252.4 1470.1 1526.1 TRUE FALSE FALSE 1526.682354 1473.747362 1475.899047 1260.077579 1024.968323 1507.193822 1474.562162 1394.968154 1409.501856 1517.022689 1.006367515 0.971473514 0.972891874 0.830625401 0.675644689 0.993520949 0.972010618 0.919543368 0.92912378 1 10.56702695 -6.421264297 4.793789421 0.999649181 0.879040911 0.228775238 0.085456301 0.215255282 7.957477055 0.013311106 0.020436255 3.79E-07 6.421264297 -0.12060827 LTVEDLEK(ac)ER ddPTM_HeLa_CUDC101_4h_R1 2 LTVEDLEKER 10 1 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 0 1 ; LTVEDLEK(1)ER;LTVEDLEK(1)ER 176.6 0.00045735 1816510 1259.94 540.46 482.54 417.23 1195.62 930.27 1049.49 1077.26 1086.54 916.02 FALSE TRUE FALSE 1112.251743 557.110932 508.627572 434.2464428 1107.421495 912.5266497 1089.969181 1199.890924 1041.752361 910.5714723 1.221487579 0.611825594 0.558580614 0.476894408 1.216182945 1.002147198 1.197016614 1.317733929 1.144064352 1 9.830628451 -7.313678921 24.99954205 1.104591342 0.907382219 0.105775639 0.278767538 662.4788366 317031.6905 0.05226376 0.059765924 4.86E-08 7.313678921 -0.197209123 LTVEDLEKER ddPTM_HeLa_CUDC101_4h_R1 2 LTVEDLEKER 10 1 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 0 0 ; ; 140.17 0.0015556 24639000 10138.2 9867 9362.7 9960.5 12398.3 10282.2 10452.1 11339 11121.7 11143.9 FALSE FALSE TRUE 8949.815565 10170.99057 9868.875883 10366.73224 11483.70211 10086.08417 10855.241 12629.78593 10663.25882 11077.61559 0.807918951 0.918157025 0.890884487 0.935827043 1.036658297 0.910492343 0.979925771 1.140117729 0.96259513 1 13.43535976 -5.916490398 4.838379502 0.906751811 1.006157981 0.304519159 0.071245371 0.247806462 10.36522629 0.012958183 0.023870242 1.21E-06 5.916490398 0.09940617 KTS(ph)SDDESEEDEDDLLQR ddPTM_HeLa_CUDC101_4h_R1 1 KTSSDDESEEDEDDLLQR 18 1 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 1 0 KT(0.153)S(0.423)S(0.423)DDES(0.002)EEDEDDLLQR 69.289 0.010527 6372400 449.44 347.82 367.41 181.7 370.33 324.71 328.7 247.44 490.75 386.2 TRUE FALSE FALSE 396.7573245 358.5359219 387.273296 189.1105114 343.0114937 318.5166978 341.3780691 275.6075694 470.5210773 383.9028652 1.033483624 0.933923537 1.008779384 0.492599896 0.89348511 0.829680439 0.889230324 0.717909644 1.225625334 1 8.584597517 -6.420476653 24.88600949 1.008318593 0.77912267 0.524051555 0.129252247 20.65627181 5014.696671 0.015770559 0.024089925 3.80E-07 6.420476653 -0.229195923 EMS(ph)PSPPAAQDPGGTALVSAR ddPTM_HeLa_CUDC101_4h_R1 1 EMSPSPPAAQDPGGTALVSAR 21 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 EMS(0.999)PS(0.001)PPAAQDPGGTALVSAR 160.76 2.31E-07 5004400 846.32 730.21 699.52 926.92 807.96 874.85 649.94 864.05 688.86 731.08 TRUE FALSE FALSE 747.1156525 752.7069046 737.3381671 964.7238041 748.3584005 858.1636938 675.0084035 962.4099594 660.4648992 726.7315036 1.028049078 1.035742775 1.014595024 1.32748312 1.029759129 1.18085385 0.928827772 1.324299214 0.908815561 1 9.505278638 -6.420019338 20.80243323 1.015678813 1.142762929 0.307256147 0.118021676 9.678911168 1951.017332 0.01547748 0.02364227 3.80E-07 6.420019338 0.127084115 TYSLGSALRPS(ph)TSR ddPTM_HeLa_CUDC101_4h_R1 1 TYSLGSALRPSTSR 14 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 TYSLGSALRPS(0.91)T(0.066)S(0.024)R 139.77 0.0026657 74732000 2251.5 2172.5 2451.3 2224.7 3713.4 3238.9 2502.1 2412.6 3273.9 2147.5 TRUE FALSE FALSE 1987.582583 2239.43215 2583.824693 2315.432882 3439.46988 3177.123379 2598.606835 2687.240632 3138.948456 2134.726574 0.93107127 1.049048706 1.210377349 1.084650798 1.611199261 1.488304599 1.217301956 1.258821933 1.470421783 1 11.05983558 -6.41781452 1.35976986 0.969081058 1.371487866 0.098889471 0.205203857 0.191235078 0.700318419 0.022604338 0.039770389 3.82E-07 6.41781452 0.402406808 S(ph)SSPVT(ph)ELASR ddPTM_HeLa_CUDC101_4h_R1 1 SSSPVTELASR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.992)S(0.1)S(0.358)PVT(0.55)ELASR 118.61 0.016779 35209000 3082 2676.7 2386.8 2243.4 2126.9 1865 2044 2011.1 3095.3 3006.2 TRUE FALSE FALSE 2720.732632 2759.165954 2515.837628 2334.895549 1970.002824 1829.428232 2122.837765 2240.035495 2967.710424 2988.318989 0.910455893 0.923317077 0.841890587 0.7813408 0.65923445 0.612193089 0.710378568 0.749597183 0.993103626 1 11.54511844 -6.413653291 1.096682027 0.96105225 0.677161976 0.891830972 0.042776492 0.119290564 0.285209599 0.008826268 0.016490342 3.86E-07 6.413653291 -0.283890274 KVVDYSQFQES(ph)DDADEDYGRDSGPPTKK ddPTM_HeLa_CUDC101_4h_R1 2 KVVDYSQFQESDDADEDYGRDSGPPTKK 28 3 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KVVDY(0.001)S(0.001)QFQES(0.973)DDADEDY(0.012)GRDS(0.004)GPPT(0.011)KK;KVVDYSQFQES(1)DDADEDYGRDSGPPTKK ; 87.457 5.38E-07 369400000 4194.31 5136.36 5143.87 5619.39 7802.8 5929.9 5842.64 7816 5757.35 4608.11 TRUE FALSE FALSE 3702.65934 5294.605164 5421.963172 5848.573013 7227.202989 5816.797037 6067.992582 8705.741847 5520.029596 4580.700757 0.808317228 1.155850479 1.18365365 1.276785654 1.577750517 1.26984873 1.324686528 1.90052621 1.205062258 1 12.1613526 -6.412823432 0.992312148 0.910559176 1.508008345 0.519366238 0.196830208 0.221231885 0.433479565 0.032537526 0.062849038 3.87E-07 6.412823432 0.59744917 SEPAVVS(ph)LEYGVAR ddPTM_HeLa_CUDC101_4h_R1 3 SEPAVVSLEYGVAR 14 0 Q9Y217 Q9Y217 MTMR6 Myotubularin-related protein 6 1 0 SEPAVVS(1)LEYGVAR;SEPAVVS(1)LEYGVAR;SEPAVVS(1)LEYGVAR ;; 149.82 0.00024173 9785600 3321.75 2608.64 2590.61 2580.33 2626.69 2264.13 2293.06 2292.51 2888.06 2998.11 TRUE FALSE FALSE 2932.3795 2689.009106 2730.666213 2685.567011 2432.924312 2220.945493 2381.504092 2553.480072 2769.012944 2980.277108 0.983928472 0.902268148 0.916245743 0.901113189 0.816341643 0.745214425 0.79908814 0.856792835 0.929112577 1 11.54123076 -6.412758667 0.762001222 0.995967981 0.793548654 0.727963903 0.040036241 0.169484248 0.195600105 0.007225835 0.015473931 3.87E-07 6.412758667 -0.202419327 VWEDRPSS(ph)AGSTPFPYNPLIMR ddPTM_HeLa_CUDC101_4h_R1 2 VWEDRPSSAGSTPFPYNPLIMR 22 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;Q9Y618-2 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 VWEDRPS(0.221)S(0.57)AGS(0.15)T(0.059)PFPYNPLIMR;VWEDRPS(0.26)S(0.739)AGSTPFPYNPLIMR ; 86.918 0.00035331 154751000 1475.43 1408.75 948.04 990.01 1181.21 1160.83 790.39 863.57 1375.13 1530.57 TRUE FALSE FALSE 1302.482332 1452.151918 999.2939101 1030.386887 1094.074492 1138.689102 820.8756071 961.8753181 1318.446559 1521.466102 0.856070556 0.954442505 0.656796697 0.677232891 0.719092256 0.74841569 0.539529344 0.632202924 0.866563217 1 10.57124648 -6.412338534 0.272495512 1.024261039 0.505062422 0.652675955 0.08334306 0.904847511 0.154264552 0.070074271 0.168346185 3.87E-07 6.412338534 -0.519198618 LVAGEMGQNEPDQGGQR ddPTM_HeLa_CUDC101_4h_R1 1 LVAGEMGQNEPDQGGQR 17 0 Q5H928;Q99714-2;Q99714 Q5H928 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 0 0 126.66 0.0013573 27843000 1121 1013.3 726.16 859.8 1142.9 1047.6 895.49 857.19 867.32 930.43 FALSE FALSE TRUE 989.5980793 1044.518572 765.4184061 894.8663604 1058.590544 1027.618775 930.0293493 954.7690447 831.5687025 924.895761 1.069956336 1.129336533 0.827572618 0.967532124 1.14455119 1.111064423 1.005550451 1.032299082 0.899094512 1 9.853146968 -9.662509297 1.539549157 1.000183293 1.0404577 0.067330515 0.093332551 1.555943645 6.684802296 0.06263839 0.014356147 2.18E-10 9.662509297 0.040274406 LVARPEPATGYTLEFR ddPTM_HeLa_CUDC101_4h_R1 2 LVARPEPATGYTLEFR 16 1 Q16658 Q16658 FSCN1 Fascin 0 0 ; ; 119.17 0.0006989 70133000 2356.1 1971.62 1966.88 2018.66 2189.5 2071 1738.31 2184.36 1872.17 2366.8 FALSE FALSE TRUE 2079.92153 2032.363275 2073.215482 2100.98968 2027.984947 2031.499126 1805.357199 2433.018713 1794.99836 2352.722168 0.884048936 0.863834796 0.881198601 0.893003733 0.861973834 0.863467499 0.767348233 1.034129208 0.762945317 1 11.20011525 -9.03281658 0.619452974 1.010464474 0.873592738 0 0.096039764 0.74794249 0.475679497 0.05510317 0.013038139 9.27E-10 9.03281658 -0.136871737 GIAIAYEDEGS(ph)G ddPTM_HeLa_CUDC101_4h_R1 2 GIAIAYEDEGSG 12 0 H0YCR5;Q9BQC3-2;Q9BQC3-3;Q9BQC3 H0YCR5 DPH2 Diphthamide biosynthesis protein 2 1 0 GIAIAYEDEGS(1)G;GIAIAYEDEGS(1)G ; 118.23 0.000303 2789100 6054.6 6279 5581.3 5040.1 6151.6 5722.8 5212.7 5225.2 6305.6 6320.9 TRUE FALSE FALSE 5344.888966 6472.448548 5883.041961 5245.657063 5697.808724 5613.647125 5413.755585 5820.015647 6045.680499 6283.303006 0.850649565 1.030102884 0.936297669 0.834856613 0.906817436 0.893422953 0.861609822 0.926266908 0.962181912 1 12.61730744 -6.403628662 14.32632199 0.937341056 0.885048621 0.297114699 0.050965641 1.616300361 186.9331082 0.009976841 0.015239948 3.95E-07 6.403628662 -0.052292435 AAKLSEGS(ph)QPAEEEEDQETPSR ddPTM_HeLa_CUDC101_4h_R1 1 AAKLSEGSQPAEEEEDQETPSR 22 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 AAKLS(0.05)EGS(0.95)QPAEEEEDQETPSR 128.52 1.87E-07 22745000 1705.9 1767.7 1913.9 1680.2 2722.5 2178.5 2353.7 1916.5 1534.8 1614 TRUE FALSE FALSE 1505.936988 1822.160742 2017.371223 1748.725818 2521.666599 2136.948742 2444.482997 2134.666613 1471.534894 1604.399856 0.938629471 1.135727316 1.257399279 1.089956354 1.571719537 1.331930275 1.523612077 1.330507856 0.917187127 1 10.64781803 -6.402223836 0.922822646 0.969692378 1.437344177 0.735015075 0.113276379 0.179801932 0.304639342 0.01977266 0.039488709 3.96E-07 6.402223836 0.467651799 SRPTSEGS(ph)DIESTEPQKQCSK ddPTM_HeLa_CUDC101_4h_R1 2 SRPTSEGSDIESTEPQKQCSK 21 2 Q4G0J3;Q4G0J3-3;D6RFF0;H0YA82 Q4G0J3 LARP7 La-related protein 7 1 0 S(0.039)RPT(0.119)S(0.158)EGS(0.685)DIESTEPQKQCSK;S(0.158)RPT(0.118)S(0.118)EGS(0.607)DIESTEPQKQCSK ; 79.426 0.00075127 40717000 3605.2 5186 5447.3 5560.4 9372.8 6400.6 6463.9 9433.2 7073.6 3193.2 TRUE FALSE FALSE 3182.603921 5345.774513 5741.797515 5787.177146 8681.387217 6278.519219 6713.214788 10507.03736 6782.023214 3174.206704 1.002645454 1.684129299 1.808892126 1.823188496 2.73497854 1.97798058 2.114926788 3.310130164 2.136604149 1 11.63218036 -6.401550867 0.625454247 0.950191584 2.638818881 0.39418918 0.518325343 0.261772919 0.202713671 0.08220181 0.193181907 3.97E-07 6.401550867 1.688627298 LVEDEERR ddPTM_HeLa_CUDC101_4h_R1 2 LVEDEERR 8 1 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 122.19 0.0073695 28506000 6966.6 4480.4 6282.4 6651.9 6721.4 5941.7 5800.8 4111.1 5931.5 6595.7 FALSE FALSE TRUE 6149.985709 4618.435813 6622.045547 6923.193234 6225.575713 5828.371972 6024.538799 4579.091006 5687.001059 6556.468483 0.938002787 0.704409062 1.010001888 1.055933274 0.94953186 0.888949895 0.918869482 0.698408147 0.867387844 1 12.67870323 -3.639577772 1.217429215 0.956152437 3.85E-09 0.31001632 0.094945744 4.530919851 1.909588034 0.013732931 7.923996227 0.00022931 3.639577772 -0.956152433 LVEEHLDSEIQKLDQMDEDELER ddPTM_HeLa_CUDC101_4h_R1 1 LVEEHLDSEIQKLDQMDEDELER 23 1 F8WBV5;G3XAJ4;F8WCJ3;B8ZZX4;O14530-2;O14530 F8WBV5 TXNDC9 Thioredoxin domain-containing protein 9 0 0 65.887 0.0082798 3469500 2270.8 1925.6 1725.5 1871.3 2411.7 2295.9 1959 2294.4 2114 2129 FALSE FALSE TRUE 2004.620266 1984.925454 1818.785749 1947.619702 2233.793696 2252.109533 2034.559286 2555.585222 2026.860025 2116.336613 0.947212392 0.937906305 0.859402865 0.920278792 1.055500189 1.06415469 0.961359017 1.207551391 0.957721004 1 11.0473534 -1.000001001 0.868544062 0.964838274 91.16979364 0.597410265 0.058679701 437.4479762 1.056539107 0.009677846 78100.66208 0.099999769 1.000001001 90.20495537 SS(ph)TPLSEAK ddPTM_HeLa_CUDC101_4h_R1 2 SSTPLSEAK 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.198)S(0.401)T(0.401)PLSEAK;S(0.046)S(0.477)T(0.477)PLSEAK ; 164.97 2.89E-05 90362400 15284.4 13178.4 14503 13599.7 15687.4 14361.2 10873.7 4216.7 15963.6 15412.5 TRUE FALSE FALSE 13492.7858 13584.41088 15287.07605 14154.35455 14530.17176 14087.28404 11293.10225 4696.712084 15305.57365 15320.82576 0.880682674 0.886663101 0.997797135 0.923863685 0.948393512 0.91948595 0.737107936 0.306557372 0.999004485 1 13.90320644 -4.247155104 1.782385227 0.941547388 0.076756339 0.95627103 0.041607039 0.154147269 0.468813794 0.007146995 0.22661227 5.66E-05 4.247155104 -0.86479105 down DLRSPLT(ph)ATPTFVTDSESTR ddPTM_HeLa_CUDC101_4h_R1 1 DLRSPLTATPTFVTDSESTR 20 1 A0A087WUK4;P13056-2;P13056-3;P13056 A0A087WUK4 NR2C1 Nuclear receptor subfamily 2 group C member 1 1 0 DLRS(0.188)PLT(0.799)AT(0.012)PT(0.001)FVTDSESTR 89.043 0.0024602 5236200 484.09 696.78 554.33 378.73 938.53 734.22 722.65 589.11 461.76 471.65 TRUE FALSE FALSE 427.345704 718.2469659 584.2987566 394.1762464 869.2965117 720.2159768 750.5228526 656.1719011 442.7260574 468.8446048 0.911486876 1.53195101 1.246252491 0.840739645 1.854125019 1.536150719 1.600792341 1.399550927 0.944291675 1 8.872966021 -6.400932404 0.664572839 0.956168418 1.583311354 0.413114059 0.253674247 0.47127839 0.412343783 0.056969321 0.130600645 3.97E-07 6.400932404 0.627142936 VLDTSSLTQSAPAS(ph)PTNK ddPTM_HeLa_CUDC101_4h_R1 3 VLDTSSLTQSAPASPTNK 18 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 VLDTSSLTQSAPAS(0.969)PT(0.031)NK;VLDTSSLTQSAPAS(1)PTNK;VLDTSSLTQS(0.001)APAS(0.499)PT(0.499)NK ;; 197.1 1.03E-16 206853000 13431.3 12331.6 11783.8 12783.8 14786.2 15063 13399.1 11907.6 13093.5 11822.9 TRUE FALSE FALSE 11856.90337 12711.52198 12420.86787 13305.17862 13695.45148 14775.69837 13915.90778 13263.11305 12553.78039 11752.57686 1.008876905 1.081594456 1.05686336 1.132107347 1.165314777 1.257230524 1.1840729 1.128528084 1.068172583 1 13.5206895 -6.39694724 0.967003367 1.00347083 1.193333045 0.728562805 0.039927307 0.138573197 0.257735197 0.006347471 0.012501824 4.01E-07 6.39694724 0.189862215 ELFQTPGHT(ph)EELVAAGK ddPTM_HeLa_CUDC101_4h_R1 1 ELFQTPGHTEELVAAGK 17 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(0.098)PGHT(0.902)EELVAAGK 111.52 0.0045402 10500000 2269.7 1644.6 2058.6 2472.4 2359 2287.3 1808.4 602.2 1948.5 2515.6 TRUE FALSE FALSE 2003.649207 1695.268177 2169.894143 2573.235159 2184.98127 2243.673563 1878.150594 670.7520138 1868.182005 2500.637099 0.801255491 0.677934506 0.867736523 1.029031825 0.873769837 0.897240773 0.751068835 0.268232449 0.747082416 1 11.28807999 -4.246960968 2.314889638 0.891410527 0.100754385 0.742621921 0.103233181 0.238979609 1.446959211 0.015669171 0.386081039 5.66E-05 4.246960968 -0.790656142 down LVEWIIVQCGPDVGRPDR ddPTM_HeLa_CUDC101_4h_R1 2 LVEWIIVQCGPDVGRPDR 18 1 Q01995;E9PJ32 Q01995 TAGLN Transgelin 0 0 ; ; 118.71 0.00011902 26383000 2136.63 2166.01 2435.93 2632.6 2356 2698.5 2377.6 2134.83 2269.34 2553 FALSE FALSE TRUE 1886.17747 2232.742201 2567.623744 2739.968807 2182.202574 2647.030609 2469.304828 2377.850418 2175.796845 2537.814642 0.743229012 0.879789313 1.011745973 1.079656789 0.859874688 1.043035439 0.973004406 0.936967727 0.857350576 1 11.30937099 -6.772375142 23.24517161 0.875437222 0.984928464 0.324970531 0.080306217 114.392595 243153.7376 0.017444219 0.023070954 1.69E-07 6.772375142 0.109491242 LVEYDIDEVVYDEDSPYQNIK ddPTM_HeLa_CUDC101_4h_R1 2 LVEYDIDEVVYDEDSPYQNIK 21 0 H7C2R7;P52788-2;P52788 H7C2R7 SMS Spermine synthase 0 0 ; ; 200.67 5.12E-19 8560700 3269.9 2672.6 2742.6 2600.3 3493.5 3065.5 2724.1 2368.91 3026.7 2640.9 FALSE FALSE TRUE 2886.607279 2754.939638 2890.873252 2706.351473 3235.791465 3007.030695 2829.16945 2638.577139 2901.938145 2625.191809 1.099579569 1.049424133 1.101204583 1.030915708 1.232592397 1.145451804 1.07770009 1.005098801 1.105419472 1 11.35820712 -9.512427897 0.462141472 0.966396002 1.100993479 0 0.068581561 2.411589515 0.5925111 0.156514108 0.017250823 3.07E-10 9.512427897 0.134597477 NREEEWDPEYT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 NREEEWDPEYTPK 13 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 NREEEWDPEYT(1)PK;NREEEWDPEYT(1)PK;NREEEWDPEYT(1)PK ;; 160.03 7.16E-05 353745000 20034.4 19598.3 18908.7 19050.4 25037.6 23639.2 21232.4 17088.8 19787.2 19382.4 TRUE FALSE FALSE 17685.998 20202.10039 19930.96152 19827.35765 23190.62613 23188.32165 22051.34078 19034.11992 18971.56324 19267.11262 0.917937127 1.048527654 1.034455027 1.029077789 1.203637856 1.203518249 1.144506767 0.987907233 0.984660422 1 14.23385276 -6.396590684 1.306342 0.964327974 1.134639018 0.461312848 0.067490502 0.250339838 0.845555581 0.012192048 0.021893129 4.01E-07 6.396590684 0.170311045 LVFLACCVAPTNPR ddPTM_HeLa_CUDC101_4h_R1 1 LVFLACCVAPTNPR 14 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 0 183 2.42E-10 348280 0 0 0 0 174.14 0 0 83.922 0 0 FALSE FALSE TRUE 0 0 0 0 161.2940391 0 0 93.47534126 0 0 0 LVFLGLDNAGK ddPTM_HeLa_CUDC101_4h_R1 1 LVFLGLDNAGK 11 0 D6RD69;Q9Y6B6;X1WI22;D6RAA2;Q5SQT8;D6RDB2;Q9NR31 D6RD69 SAR1B;SAR1A GTP-binding protein SAR1b;GTP-binding protein SAR1a 0 0 163.88 0.0024302 320630 319.15 391.28 461.4 340.62 388.52 340.14 317.26 210.07 441.76 304.89 FALSE FALSE TRUE 281.7397208 403.334873 486.3446797 354.5119559 359.8596536 333.6523962 329.4968245 233.9835197 423.5504658 303.0765007 0.929599359 1.330802197 1.604692804 1.169711129 1.187355842 1.100885075 1.087173779 0.772027917 1.397503484 1 8.243538186 -7.279637042 24.49402221 0.966755245 1.188760191 0 0.239432282 746.6645744 1005006.739 0.03518425 0.040278263 5.25E-08 7.279637042 0.222004946 QPEYSPES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 QPEYSPESPR 10 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 QPEYS(0.163)PES(0.837)PR;QPEYS(0.051)PES(0.949)PR;QPEYS(0.213)PES(0.787)PR ;; 116.71 0.005857 196756700 2621.63 2792.83 2732.03 3110.37 3129.57 2813.55 3131.66 3129.39 3270.64 3353.28 TRUE FALSE FALSE 2314.326506 2878.873782 2879.731806 3237.224333 2898.707856 2759.886221 3252.449175 3485.627108 3135.822835 3333.334541 0.6942977 0.863661822 0.863919229 0.971166948 0.869612042 0.827965566 0.975734399 1.045687753 0.94074651 1 11.7027504 -6.39445834 6.117047394 0.852741365 0.930028458 0.090536625 0.092684088 0.510039484 23.41484625 0.019510299 0.029887427 4.03E-07 6.39445834 0.077287093 LVGIISSR ddPTM_HeLa_CUDC101_4h_R1 1 LVGIISSR 8 0 P12268;H0Y4R1;E7ETK5 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 0 0 115.46 0.029771 952490 615.22 555.9 644.43 500.48 881.44 428.5 645.24 469.03 385.26 394.98 FALSE FALSE TRUE 543.1048442 573.0266201 679.2698351 520.8917377 816.4179273 420.3270764 670.1271229 522.4224793 369.3794197 392.6306414 1.383246204 1.459454662 1.730047947 1.326671132 2.079353574 1.070540687 1.706762163 1.330569814 0.940780929 1 8.617028957 -8.422370403 0.623615269 1.008797845 1.544621424 0.404889472 0.262505259 0.533781205 0.437955726 0.133859238 0.060990841 3.78E-09 8.422370403 0.535823579 RTAS(ph)NPKVENEDEPVR ddPTM_HeLa_CUDC101_4h_R1 1 RTASNPKVENEDEPVR 16 2 Q9UBF8-2 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 RT(0.227)AS(0.773)NPKVENEDEPVR 81.639 0.011874 10505000 1262.3 1457.8 1475.2 1339.4 1719.2 1842.7 1303.1 1564 1545.1 1561.9 TRUE FALSE FALSE 1114.335108 1502.71309 1554.953774 1394.026521 1592.378041 1807.553568 1353.361004 1742.039438 1481.410324 1552.609749 0.717717448 0.967862717 1.001509732 0.897860214 1.025613836 1.164203412 0.871668495 1.122007278 0.954142098 1 10.60047954 -6.39303 1.228657502 0.871060361 1.032947207 0.175391105 0.109170563 0.510411304 1.526910205 0.022821856 0.041727852 4.05E-07 6.39303 0.161886847 IKNENTEGS(ph)PQEDGVELEGLK ddPTM_HeLa_CUDC101_4h_R1 5 IKNENTEGSPQEDGVELEGLK 21 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 IKNENT(0.001)EGS(0.999)PQEDGVELEGLK;IKNENTEGS(1)PQEDGVELEGLK;IKNENT(0.002)EGS(0.998)PQEDGVELEGLK;IKNENT(0.029)EGS(0.971)PQEDGVELEGLK;IKNENTEGS(1)PQEDGVELEGLK ;;;; 118.02 1.05E-06 327492900 19700 16060.9 14994.13 15451.1 15093.4 17150.9 15482.7 13189.2 12150.24 15392.4 TRUE FALSE FALSE 17390.79586 16555.71729 15804.75802 16081.26264 13979.98995 16823.77516 16079.87293 14690.60522 11649.40196 15300.84532 1.136590528 1.082013245 1.032933651 1.05100485 0.913674353 1.099532399 1.050914024 0.960117229 0.761356756 1 13.90132374 -6.391852885 2.444321503 1.067136223 1.015341542 0 0.112324435 0.529663647 6.182172437 0.010919618 0.0176265 4.06E-07 6.391852885 -0.05179468 KIVEPEVVGES(ph)DS(ph)EVEGDAWR ddPTM_HeLa_CUDC101_4h_R1 2 KIVEPEVVGESDSEVEGDAWR 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 KIVEPEVVGES(1)DS(1)EVEGDAWR;KIVEPEVVGES(1)DS(1)EVEGDAWR ; 99.836 0.00012697 44408000 10047.4 10933.9 10834.5 10252 13135.1 12010.6 10605.2 12502.4 10855.2 10733.1 TRUE FALSE FALSE 8869.659003 11270.7605 11420.24584 10670.12087 12166.14984 11781.51782 11014.24612 13925.62268 10407.74406 10669.25904 0.831328489 1.05637706 1.070387906 1.000080777 1.140299415 1.104248924 1.03233468 1.305209914 0.975488927 1 13.38117237 -6.390237682 0.932161246 0.924489876 1.139306074 0.435209136 0.087427235 0.360322755 0.622638016 0.01823318 0.036570868 4.07E-07 6.390237682 0.214816198 LVIEEAER ddPTM_HeLa_CUDC101_4h_R1 1 LVIEEAER 8 0 P50991-2;P50991 P50991-2 CCT4 T-complex protein 1 subunit delta 0 0 125.81 0.035239 6036400 2128 2071.3 2114.7 2022.5 2455.5 1952.5 2305.9 2021.7 2734.8 3179.3 FALSE FALSE TRUE 1878.559066 2135.114298 2229.027079 2104.986292 2274.362657 1915.259316 2394.839335 2251.842156 2622.070386 3160.389382 0.594407473 0.675585834 0.705301407 0.66605283 0.719646342 0.606020045 0.757767175 0.712520479 0.829666876 1 11.6258866 -9.359730179 1.003392579 1.006317884 0.67542712 0.619823959 0.069025669 0.161566293 0.282213131 0.039266621 0.009459501 4.37E-10 9.359730179 -0.330890765 LVIIEGDLER ddPTM_HeLa_CUDC101_4h_R1 2 LVIIEGDLER 10 0 J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;P06753-7;P06753-2;A0A087WWU8;P06753-5;P06753-3;P06753-6;P06753-4 J3KN67;P06753-2 TPM3 Tropomyosin alpha-3 chain 0 0 ; ; 120.99 0.025476 9889100 3066.1 2817.9 1921.92 2473 2313.5 2123.18 2409.6 1814.89 2523.7 2768.1 FALSE FALSE TRUE 2706.696406 2904.716159 2025.824809 2573.859629 2142.837714 2082.683879 2502.539079 2021.489742 2419.672018 2751.635218 0.983668325 1.055632716 0.736225789 0.935392748 0.77875065 0.756889527 0.909473415 0.734650337 0.879357846 1 11.42607351 -6.765315533 24.99788389 0.996823204 0.815211531 0.541677704 0.076307535 42.23067211 272352.2563 0.009666179 0.012973732 1.72E-07 6.765315533 -0.181611673 LVIIEGDLERTEER ddPTM_HeLa_CUDC101_4h_R1 2 LVIIEGDLERTEER 14 1 J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753;P06753-7;P06753-2;A0A087WWU8;P06753-5;P06753-3;P06753-6;P06753-4 J3KN67;P06753-2 TPM3 Tropomyosin alpha-3 chain 0 0 ; ; 130.44 0.0010349 10140900 3376.9 3246.6 3105.8 3631.6 4671.9 3873.5 3498.4 4662.9 3619.9 2400.9 FALSE FALSE TRUE 2981.064901 3346.623898 3273.708943 3779.712345 4327.263245 3799.619441 3633.33446 5193.705688 3470.68619 2386.61934 1.249074308 1.402244523 1.371692958 1.583709761 1.813135079 1.592050889 1.522377029 2.176176821 1.454226961 1 11.22075276 -1 0.121386952 0.748420452 4.630689331 0.540944129 0.204343918 26.37929844 0.219661969 0.611280537 17.41580806 0.1 1 3.882268879 LVIIESDLER ddPTM_HeLa_CUDC101_4h_R1 1 LVIIESDLER 10 0 P09493-3;P09493-9;Q6ZN40;A0A0S2Z4G6;P09493-10;P09493;P09493-4;H0YKX5;P09493-8;P09493-7;P09493-2;H7BYY1;P09493-6;P09493-5;H0YK48;F5H7S3;H0YKJ4;B7Z596;A0A494BZZ2;A0A494C0V8;H0YL42 P09493-3 TPM1 Tropomyosin alpha-1 chain 0 0 125.57 0.019244 2893000 1176.5 967.22 1034.9 1020 1013.3 978.24 1036.2 753.07 980.8 1088.5 FALSE FALSE TRUE 1038.592453 997.0189018 1090.849824 1061.600009 938.5508778 959.5817019 1076.166581 838.7964448 940.3710089 1082.025554 0.959859451 0.921437482 1.008155326 0.981122863 0.867401768 0.886838299 0.994585181 0.77520946 0.869083919 1 10.07951886 -1.204879819 0.281816126 0.988197411 5.95E-18 0.195940912 0.064710263 30.56543926 0.433616232 0.02173686 14.79039021 0.062390746 1.204879819 -0.988197411 LVIIESDLERAEER ddPTM_HeLa_CUDC101_4h_R1 2 LVIIESDLERAEER 14 1 P09493-3;P09493-9;Q6ZN40;A0A0S2Z4G6;P09493-10;P09493;P09493-4;H0YKX5;P09493-8;P09493-7;P09493-2;H7BYY1;P09493-6;P09493-5;H0YK48;F5H7S3;H0YKJ4;B7Z596;A0A494BZZ2;A0A494C0V8;H0YL42 P09493-3 TPM1 Tropomyosin alpha-1 chain 0 0 ; ; 125.36 0.0014168 9270900 1702.66 1758.09 2033.04 2083.58 3005.7 2327.1 2536.04 2715.6 2400.5 2029.4 FALSE FALSE TRUE 1503.076776 1812.254669 2142.952292 2168.557398 2783.975499 2282.714445 2633.855912 3024.732927 2301.550374 2017.329039 0.745082605 0.898343619 1.062272069 1.074964647 1.380030449 1.131552861 1.305615426 1.499375099 1.140889924 1 10.9782307 -6.13518666 1.243953036 0.878037656 1.329233111 0.581711396 0.138089455 0.185780781 0.566997109 0.02194807 0.046154027 7.33E-07 6.13518666 0.451195455 LVIITAGAR ddPTM_HeLa_CUDC101_4h_R1 1 LVIITAGAR 9 0 P00338-3;P00338;P00338-2;P00338-5;F5GYU2;F5GXY2;F5GXH2 P00338-3 LDHA L-lactate dehydrogenase A chain 0 0 137.9 0.021798 1666100 1690.4 582.28 183.83 671 354.61 621.5 335.69 267.92 247.04 182.51 FALSE FALSE TRUE 1492.253874 600.2193566 193.7684059 698.3662803 328.4511268 609.645923 348.6376757 298.4189298 236.8569066 181.4244224 8.225209455 3.308371324 1.06803926 3.849350992 1.810401943 3.360329965 1.92166893 1.644866363 1.305540365 1 7.503224867 -7.003468509 24.84876355 4.483214199 2.34508877 0.012341744 2.052139893 225.5499336 1615878.364 0.443909501 0.576724706 9.92E-08 7.003468509 -2.138125429 LVILANNCPALR ddPTM_HeLa_CUDC101_4h_R1 2 LVILANNCPALR 12 0 E5RJH3;E5RI99;P62888 E5RJH3 RPL30 60S ribosomal protein L30 0 0 ; ; 204.62 1.50E-10 3849500 1025 794.94 775.15 887.05 1055.03 881.81 847.44 872.35 848.6 616.72 FALSE FALSE TRUE 904.8510538 819.4311592 817.0569537 923.2277332 977.2025388 864.9909434 880.1260447 971.6547978 813.6203488 613.051722 1.475978325 1.336642782 1.332770017 1.505954066 1.593996891 1.410959161 1.435647292 1.584947506 1.327164283 1 9.259864986 -10.49055977 0.322578683 0.495693692 1.500424492 0.345280894 0.131487675 2.234564541 0.160465743 0.893997832 0.035593147 3.23E-11 10.49055977 1.0047308 LVILEGELERAEER ddPTM_HeLa_CUDC101_4h_R1 4 LVILEGELERAEER 14 1 P67936;A0A2R8Y5V9;A0A2R8YGX3;A0A2R8YH90;P67936-2;A0A2R8YHD2;K7ENT6;A0A2R8YE05;A0A2R8YEU4;A0A5F9UN72 P67936 TPM4 Tropomyosin alpha-4 chain 0 0 ;;; ;;; 122.42 0.0016377 11220300 3717.67 3993.77 3850.06 4050.09 5709.25 4253.99 4295.33 5327.54 4247.75 3777.27 FALSE FALSE TRUE 3281.890358 4116.81332 4058.205889 4215.270176 5288.090002 4172.852228 4461.002317 5934.005619 4072.655947 3754.80263 0.874051363 1.096412708 1.08080405 1.122634288 1.408353653 1.111337303 1.188079043 1.580377507 1.08465247 1 11.87452136 -6.246763742 0.881673207 0.941671946 1.322550577 0.493681651 0.136134119 0.294425403 0.451709238 0.024164578 0.054976746 5.67E-07 6.246763742 0.380878631 LVINGNPITIFQER ddPTM_HeLa_CUDC101_4h_R1 2 LVINGNPITIFQER 14 0 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 251.75 1.86E-55 51326000 2049.95 1773.13 1771.52 1541.24 1625.31 1621.09 1450.12 1476.23 1871.01 2253.69 FALSE FALSE TRUE 1809.657969 1827.758034 1867.29373 1604.098429 1505.414119 1590.170409 1506.051614 1644.278056 1793.886176 2240.284952 0.807780263 0.815859622 0.833507241 0.716024284 0.671974392 0.709807209 0.672258952 0.733959336 0.80074018 1 11.12946653 -8.988510731 0.194428456 1.180679843 0.629520432 0.428798718 0.070907617 1.59601047 0.11354398 0.247317376 0.073886086 1.03E-09 8.988510731 -0.55115941 GRSTDEY(ph)S(ph)EADEEEEEEEGKPSR ddPTM_HeLa_CUDC101_4h_R1 1 GRSTDEYSEADEEEEEEEGKPSR 23 2 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 2 0 GRS(0.096)T(0.132)DEY(0.877)S(0.895)EADEEEEEEEGKPSR 71.434 0.00096838 18456000 2021 2048 2047.7 2046.8 2572.3 2285 2137.5 1953.9 2195.6 2304.4 TRUE FALSE FALSE 1784.101444 2111.096453 2158.404856 2130.277351 2382.546554 2241.417432 2219.944091 2176.324078 2105.096439 2290.693326 0.778847794 0.921597155 0.942249594 0.929970558 1.040098439 0.978488655 0.969114488 0.950072213 0.918977855 1 11.16156861 -6.390014639 1.848716736 0.895235403 0.980145564 0.249389416 0.056693109 0.478948446 3.214502462 0.013997815 0.023490856 4.07E-07 6.390014639 0.084910161 GNSPPSS(ph)GEACREEK ddPTM_HeLa_CUDC101_4h_R1 1 GNSPPSSGEACREEK 15 1 P41227;P41227-2 P41227 NAA10 N-alpha-acetyltransferase 10 1 0 GNS(0.204)PPS(0.307)S(0.489)GEACREEK 75.316 0.016474 42849000 1719.2 2015.5 1930.6 1829 2780.8 2056.3 1852.4 2444.3 2064.6 2052.1 TRUE FALSE FALSE 1517.677982 2077.595166 2034.974076 1903.594526 2575.665924 2017.079504 1923.847689 2722.549232 1979.496314 2039.894018 0.743998447 1.018481915 0.997588138 0.933183052 1.262646932 0.988815833 0.943111589 1.334652295 0.970391744 1 10.99427848 -6.389917802 1.264942053 0.8843599 1.102337756 0.246876478 0.137720167 0.418346077 1.325341828 0.025576832 0.046474362 4.07E-07 6.389917802 0.217977856 LVINGNPITIFQERDPSK ddPTM_HeLa_CUDC101_4h_R1 2 LVINGNPITIFQERDPSK 18 1 P04406;P04406-2 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 161.94 2.65E-05 67746000 2957.9 2762.95 3283.6 2998.5 3718.8 3056.3 3148.8 3916.2 3029.7 2515.8 FALSE FALSE TRUE 2611.179446 2848.073215 3461.121348 3120.791791 3444.471533 2998.00617 3270.250271 4362.004378 2904.814484 2500.83591 1.044122661 1.138848496 1.383985784 1.247899464 1.377328084 1.198801632 1.307662873 1.744218548 1.161537417 1 11.28819468 -1 0.188872087 0.944739556 3.800498477 0.58928987 0.129503133 21.72355153 0.24211042 0.133502515 18.17378576 0.1 1 2.855758921 RLPS(ph)S(ph)PASPSPK ddPTM_HeLa_CUDC101_4h_R1 1 RLPSSPASPSPK 12 1 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0;Q9H4G0-4;H7C2K6;X6RC15 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 2 0 RLPS(0.995)S(0.945)PAS(0.052)PS(0.008)PK 94.688 0.031369 13510000 6630.5 4833.7 4968.3 4977.1 4675.4 4166.8 3937.9 4816.1 4794.4 5627.2 TRUE FALSE FALSE 5853.282841 4982.620568 5236.901326 5180.087651 4330.505057 4087.325232 4089.786122 5364.345357 4596.772803 5593.729164 1.04640083 0.890751129 0.936209311 0.926052638 0.774171385 0.730697735 0.731137673 0.958992686 0.821772501 1 12.44959469 -6.38925765 0.999321241 1.019669175 0.791376204 0.184994795 0.09585602 0.236666318 0.469876624 0.013254509 0.025926335 4.08E-07 6.38925765 -0.22829297 LVLEVAQHLGESTVR ddPTM_HeLa_CUDC101_4h_R1 2 LVLEVAQHLGESTVR 15 0 P06576 P06576 ATP5B "ATP synthase subunit beta, mitochondrial" 0 0 ; ; 111.07 0.0021718 9576600 6043.9 3809.3 3223 4258.6 5525 4921.8 5020.8 4458.6 5064.5 4884.2 FALSE FALSE TRUE 5335.443204 3926.660018 3397.245129 4432.284115 5117.431757 4827.924865 5214.453938 4966.149002 4855.739166 4855.148561 1.098924809 0.808762074 0.699720119 0.912903912 1.054021662 0.994392819 1.074005022 1.022862419 1.000121645 1 12.24529973 TS(ph)TSDLSR ddPTM_HeLa_CUDC101_4h_R1 2 TSTSDLSR 8 0 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 T(0.022)S(0.977)T(0.001)SDLSR;T(0.365)S(0.611)T(0.012)S(0.012)DLSR ; 128.6 0.0058363 42327000 11645.1 7419 8676.6 9155.1 6802.9 7153.4 7789.2 5731.6 8678.6 10216 TRUE FALSE FALSE 10280.07903 7647.570596 9145.683241 9528.48455 6301.06362 7016.960813 8089.632053 6384.062176 8320.864435 10155.23478 1.012293586 0.753066843 0.900588065 0.938283039 0.620474441 0.690969827 0.796597246 0.628647423 0.819367018 1 13.30993597 -6.389124324 0.617713712 1.012397109 0.676317622 0.372321049 0.108573884 0.347286457 0.261727706 0.021384544 0.051067827 4.08E-07 6.389124324 -0.336079487 LVNHFVEEFK ddPTM_HeLa_CUDC101_4h_R1 2 LVNHFVEEFK 10 0 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 160.77 5.57E-05 68986000 19496.1 18266.3 16936 18031.8 19664.8 17467.7 16326.3 17484.5 18138.6 17280.2 FALSE FALSE TRUE 17210.79671 18829.06305 17851.61139 18767.21474 18214.16688 17134.53273 16956.01086 19474.86481 17390.91923 17177.4166 1.001943256 1.096152203 1.039248905 1.092551644 1.060355425 0.997503473 0.98711065 1.13374818 1.012429263 1 14.06822546 -7.353927797 11.10311031 1.000878168 1.053713933 0.246409132 0.042069798 0.621540447 72.23519964 0.006936224 0.007926775 4.43E-08 7.353927797 0.052835765 LVNHFVEEFKR ddPTM_HeLa_CUDC101_4h_R1 2 LVNHFVEEFKR 11 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 A0A0G2JIW1 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 0 ; ; 78.098 0.029672 30533000 13396.1 11637 10995.6 13080.7 12333 10530.1 10255.5 10843.4 10222.9 9249.7 FALSE FALSE TRUE 11825.82947 11995.52218 11590.0554 13614.18749 11423.21916 10329.25589 10651.05807 12077.76883 9801.507735 9194.682373 1.28615965 1.304615178 1.260517213 1.480658813 1.242372351 1.12339453 1.158393258 1.313560201 1.065997425 1 13.16658402 -9.151522979 0.835759613 0.994479528 1.269619855 0.506752948 0.093038408 0.413511742 0.506372292 0.071898923 0.019202918 7.05E-10 9.151522979 0.275140327 SPS(ph)GAGEGASCSDGPR ddPTM_HeLa_CUDC101_4h_R1 1 SPSGAGEGASCSDGPR 16 0 Q7Z2K8-2;Q7Z2K8 Q7Z2K8-2 GPRIN1 G protein-regulated inducer of neurite outgrowth 1 1 0 S(0.24)PS(0.752)GAGEGASCS(0.007)DGPR 67.648 0.037103 5945600 4435.2 10586 11602 14350 15578 17297 14141 8151.2 17638 19201 TRUE FALSE FALSE 3915.312579 10912.14211 12229.23921 14935.25503 14428.84198 16967.08854 14686.42311 9079.09966 16910.95417 19086.7916 0.205132044 0.571711702 0.640717386 0.782491649 0.755959528 0.888943983 0.769454784 0.47567448 0.886002977 1 14.22028699 -6.389040415 4.857092926 0.610077572 0.745762534 0.001883208 0.221193465 0.694060633 24.66303783 0.048054928 0.073986486 4.08E-07 6.389040415 0.135684962 TEMDKS(ph)PFNSPSPQDSPR ddPTM_HeLa_CUDC101_4h_R1 2 TEMDKSPFNSPSPQDSPR 18 1 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 0 TEMDKS(0.991)PFNS(0.009)PSPQDSPR;T(0.008)EMDKS(0.904)PFNS(0.083)PS(0.005)PQDSPR ; 281.96 3.77E-103 188433000 3147.3 3068.56 3016.54 3260.77 4230.8 3781.4 3160.3 3072.01 3264.1 3185 TRUE FALSE FALSE 2778.378265 3163.098696 3179.623277 3393.758295 3918.702313 3709.276095 3282.19383 3421.715201 3129.552416 3166.055478 0.877551984 0.999066099 1.004285395 1.071920034 1.23772383 1.171576468 1.036682349 1.080750235 0.988470492 1 11.62847082 -6.386916197 1.940593635 0.944535919 1.128181122 0.590765848 0.061436059 0.179035209 1.322739364 0.011602916 0.019348532 4.10E-07 6.386916197 0.183645203 NTSAEKELSSPIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 NTSAEKELSSPISPK 15 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 NTSAEKELS(0.022)S(0.015)PIS(0.963)PK 63.392 0.032087 14008000 2084.3 2652 2571.4 3001 4662.6 3352.4 3356.2 4010.5 3189 2297.9 TRUE FALSE FALSE 1839.981514 2733.704977 2710.417662 3123.393751 4318.649287 3288.458555 3485.649758 4467.039109 3057.54807 2284.231989 0.805514292 1.19677204 1.186577228 1.367371513 1.890635149 1.439634228 1.525961363 1.955597825 1.338545334 1 11.15749346 -6.382831078 1.180610619 0.91286142 1.680920287 0.59172537 0.217936889 0.146654259 0.405227726 0.030345324 0.056432942 4.14E-07 6.382831078 0.768058867 LVPLLDRPFDETTYEETED ddPTM_HeLa_CUDC101_4h_R1 1 LVPLLDRPFDETTYEETED 19 1 O15270 O15270 SPTLC2 Serine palmitoyltransferase 2 0 0 142.76 0.0019056 24318000 3126.2 2735.2 2062.7 2316.6 2504.6 2821.7 2499.2 2069.4 2001.8 2132.6 FALSE FALSE TRUE 2759.751575 2819.46827 2174.215801 2411.080961 2319.840648 2767.880774 2595.594981 2304.972131 1919.284957 2119.9152 1.301821684 1.329991063 1.025614516 1.137347834 1.094308229 1.305656365 1.224386231 1.087294497 0.905359307 1 11.04979084 -9.529520444 1.314225949 1.000960169 1.201511753 0.425756447 0.104301277 0.406058754 1.265422941 0.071474412 0.017443368 2.95E-10 9.529520444 0.200551584 GRAS(ph)SHSSQTQGGGS(ph)VTK ddPTM_HeLa_CUDC101_4h_R1 2 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.977)S(0.022)HS(0.001)SQTQGGGS(0.585)VT(0.414)K;GRAS(0.902)S(0.097)HS(0.003)SQT(0.005)QGGGS(0.925)VT(0.068)K ; 89.297 0.0061443 5673200 3048.2 2014.36 2930.6 2739.4 3671.1 2852.9 2368.9 617.99 3065.2 2999.4 TRUE FALSE FALSE 2690.894617 2076.420044 3089.037101 2851.124573 3400.290267 2798.485686 2460.269267 688.3394836 2938.851159 2981.559435 0.902512486 0.696420812 1.036047467 0.956252805 1.140440209 0.938597988 0.825161906 0.230865592 0.985675859 1 11.54185138 -4.246859573 2.631704626 0.952759303 0.068650675 0.804993739 0.106790404 0.164131386 1.420864647 0.015134881 0.322935418 5.66E-05 4.246859573 -0.884108628 down GNIWS(ph)AEK ddPTM_HeLa_CUDC101_4h_R1 2 GNIWSAEK 8 0 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 GNIWS(1)AEK;GNIWS(1)AEK ; 94.363 0.024005 108148000 12503.9 9229.2 10212.2 10688.7 10099.9 9813.8 8377.1 2151.21 10964.7 10599.7 TRUE FALSE FALSE 11038.2118 9513.540713 10764.30242 11124.63139 9354.850499 9626.618116 8700.207553 2396.095051 10512.73043 10536.65251 1.047601388 0.90289973 1.021605525 1.055803195 0.88783895 0.913631545 0.825708881 0.22740572 0.997729631 1 13.36312898 -4.246774661 1.82036852 1.004158876 2.87E-26 0.93440385 0.059362342 0.159176977 0.510574754 0.00884644 0.276007932 5.67E-05 4.246774661 -1.004158876 down GTT(ph)PPPPSWEPNSQTK ddPTM_HeLa_CUDC101_4h_R1 2 GTTPPPPSWEPNSQTK 16 0 O95835;O95835-2 O95835 LATS1 Serine/threonine-protein kinase LATS1 1 0 GT(0.07)T(0.93)PPPPSWEPNSQTK;GT(0.066)T(0.934)PPPPSWEPNSQTK ; 155.88 0.00045908 25923000 4329.9 3495.4 3267.3 2809.5 2870.5 2788.6 2451.2 2133.85 3360.2 4214 TRUE FALSE FALSE 3822.355686 3603.089131 3443.940121 2924.083554 2658.748934 2735.412101 2545.743605 2376.758859 3221.691134 4188.934941 0.912488673 0.860144448 0.822151733 0.698049408 0.634707622 0.653008972 0.607730519 0.567389776 0.769095529 1 12.03236776 -6.380815325 0.552116709 0.982643215 0.562448377 0.735817339 0.070009692 0.089406131 0.053681994 0.006416637 0.016117333 4.16E-07 6.380815325 -0.420194838 LVPVGYGIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LVPVGYGIKK 10 1 P24534 P24534 EEF1B2 Elongation factor 1-beta 0 1 ; LVPVGYGIK(1)K;LVPVGYGIK(1)K 159.04 0.00053368 4540700 6955.3 3742.5 1827.76 4199.9 4569.9 4187.9 3102.51 2730.22 2388.19 670.31 FALSE TRUE FALSE 6140.010278 3857.801989 1926.574234 4371.190076 4232.787582 4108.022785 3222.17485 3041.017209 2289.747797 666.3229663 9.214766094 5.78968786 2.891351989 6.560167211 6.352456385 6.165212656 4.835755351 4.563878723 3.43639333 1 9.38007781 -9.584196195 1.384266048 1.011861783 6.195499755 0.368475203 1.723784522 0.27464356 0.94724622 1.311116284 0.308441331 2.60E-10 9.584196195 5.183637972 EAGT(ph)PSLDSEAK ddPTM_HeLa_CUDC101_4h_R1 3 EAGTPSLDSEAK 12 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 EAGT(0.991)PS(0.009)LDSEAK;EAGT(0.997)PS(0.003)LDSEAK;EAGT(0.979)PS(0.021)LDSEAK ;; 174.46 2.73E-06 126704000 17901.9 14124.5 13740.6 14011.8 13742.4 13066.4 13852.7 12266.7 13726.2 14970.4 TRUE FALSE FALSE 15803.46642 14559.6591 14483.4584 14583.26177 12728.65053 12817.18019 14387.00328 13663.09154 13160.40023 14881.3554 1.061964183 0.978382595 0.973262046 0.979968651 0.855342151 0.861291183 0.966780437 0.918134886 0.884354945 1 13.86121831 -6.380260907 1.351570352 1.027465644 0.905895326 0.110595268 0.059402446 0.206793659 0.746186337 0.007297113 0.01310015 4.17E-07 6.380260907 -0.121570318 LVQAEYWHDPIKEDVYR ddPTM_HeLa_CUDC101_4h_R1 2 LVQAEYWHDPIKEDVYR 17 1 Q5T0S4;A0A286YFE3;A0A2C9F2P4;A0A286YFL8;A0A286YFF7;P50897-2;P50897 Q5T0S4 PPT1 Palmitoyl-protein thioesterase 1 0 0 ; ; 104.41 0.0010729 61255000 5375 4672.6 4661.1 4619.7 4985.7 5098.9 4339.7 4530 4977.6 5436.9 FALSE FALSE TRUE 4744.950648 4816.557268 4913.093165 4808.111334 4617.914844 5001.646978 4507.083683 5045.676889 4772.421221 5404.561077 0.877953007 0.891202301 0.909064232 0.889639559 0.854447712 0.925449247 0.833940743 0.933596053 0.883035857 1 12.39996174 -9.276487693 0.717346814 1.010897838 0.886759831 0 0.046024356 0.358034867 0.285246393 0.027203023 0.005328487 5.29E-10 9.276487693 -0.124138007 LVQAFQFTDK ddPTM_HeLa_CUDC101_4h_R1 4 LVQAFQFTDK 10 0 Q06830;A0A0A0MSI0;A0A0A0MRQ5 Q06830 PRDX1 Peroxiredoxin-1 0 0 ;;; ;;; 172.98 0.0003345 41609540 4426.95 3995.79 2947.18 3683.331 3472.8 3266.694 3242.8 3483.94 3153.14 2435.32 FALSE FALSE TRUE 3908.029632 4118.895554 3106.513466 3833.553159 3216.618463 3204.387255 3367.875882 3880.537647 3023.166235 2420.834608 1.614331528 1.701436166 1.283240687 1.583566736 1.328722934 1.323670458 1.391204451 1.60297512 1.248811556 1 11.2412888 -9.367947098 1.083589496 0.999104958 1.479861597 0.427916896 0.154742873 0.271113906 0.567934067 0.098808476 0.025392366 4.29E-10 9.367947098 0.480756639 LVQAFQYTDK ddPTM_HeLa_CUDC101_4h_R1 2 LVQAFQYTDK 10 0 Q13162;H7C3T4 Q13162 PRDX4 Peroxiredoxin-4 0 0 ; ; 153.24 0.0014997 287530000 4325.9 4088.4 2530.66 3282.08 3034.82 3072.19 2967.62 3068.66 2633.96 2221.17 FALSE FALSE TRUE 3818.82456 4214.358758 2667.475134 3415.937409 2810.947375 3013.593094 3082.082097 3417.98385 2525.387054 2207.958382 1.729572709 1.908712951 1.208118394 1.547102263 1.273097988 1.364877671 1.395896826 1.548029111 1.143765695 1 11.10849726 -9.475961727 1.248326823 1.003236858 1.512536816 0.409134031 0.201822658 0.336219729 0.946702798 0.143567039 0.036181592 3.34E-10 9.475961727 0.509299958 LVQGSILK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 LVQGSILKK 9 1 P12004 P12004 PCNA Proliferating cell nuclear antigen 0 1 LVQGSILK(1)K 157.96 0.0020181 2047100 1244.7 682.55 565.64 566.22 1438 801.57 1396.5 1027.3 939.92 651.96 FALSE TRUE FALSE 1098.798153 703.5785565 596.2202094 589.312899 1331.921605 786.2813878 1450.363473 1144.24368 901.1760998 648.0821129 1.695461317 1.085631809 0.919976339 0.90931826 2.055174149 1.213243464 2.237931651 1.765584417 1.390527654 1 9.340032806 -5.221226747 1.327224401 1.269817719 1.944268356 0.348643003 0.37071296 0.485612702 1.537476289 0.062092744 0.270050648 6.01E-06 5.221226747 0.674450637 KADTTTPTPTAILAPGS(ph)PASPPGSLEPK ddPTM_HeLa_CUDC101_4h_R1 1 KADTTTPTPTAILAPGSPASPPGSLEPK 28 1 P25440-2;P25440;A0A0G2JK44;A0A140T9E9;H0Y6K2;P25440-3;P25440-4;A0A0G2JHL0;A0A140T9V2;A0A140T9F7;U3KQA6;E9PIQ3;H0YDJ7;U3KPW0 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 KADTTTPTPTAILAPGS(0.553)PAS(0.446)PPGS(0.001)LEPK 139.22 2.53E-16 37807000 2501.9 2486.2 2125.3 1916.8 2250.6 2080.7 1853.7 1972.2 2387.1 2374.9 TRUE FALSE FALSE 2208.631075 2562.796875 2240.200147 1994.975389 2084.577722 2041.014114 1925.19783 2196.707276 2288.702728 2360.773989 0.935553799 1.085574853 0.948926139 0.84505141 0.883006053 0.864552949 0.815494342 0.930502999 0.969471342 1 11.20504422 -6.379664854 4.908772518 0.978970668 0.865872179 0.629179077 0.046305308 0.127747238 4.649632387 0.007394348 0.011390381 4.17E-07 6.379664854 -0.113098488 LVQSPNSYFMDVK ddPTM_HeLa_CUDC101_4h_R1 1 LVQSPNSYFMDVK 13 0 P42677;H0YMV8;Q71UM5;C9JLI6 P42677 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like 0 0 148.56 0.0020005 14709000 1647.3 1295.9 1330.7 1435.5 1617.9 1528.7 1627.3 1126.1 1548.7 1259.9 FALSE FALSE TRUE 1454.205991 1335.825143 1402.641667 1494.045895 1498.55074 1499.542594 1690.065506 1254.290672 1484.86193 1252.406059 1.161129796 1.066607059 1.119957587 1.192940488 1.196537441 1.1973294 1.349454911 1.001504794 1.185607431 1 10.29048668 -11.94069447 0.186762416 0.606058727 1.214157933 0 0.103604447 22.84427064 0.454297926 3.535782874 0.113099121 1.15E-12 11.94069447 0.608099207 ETVFTKS(ph)PYQEFTDHLVK ddPTM_HeLa_CUDC101_4h_R1 1 ETVFTKSPYQEFTDHLVK 18 1 E9PQD7;P15880;H0YEN5 E9PQD7 RPS2 40S ribosomal protein S2 1 0 ET(0.023)VFT(0.253)KS(0.716)PY(0.009)QEFTDHLVK 81.713 0.0038681 37282000 3809.6 3980.2 3695.6 3656.7 4629.2 4066.6 3798 3944.3 3602.6 4005.6 TRUE FALSE FALSE 3363.044463 4102.825244 3895.395315 3805.836032 4287.713139 3989.03638 3944.490132 4393.303169 3454.099303 3981.774513 0.84460947 1.030401202 0.978306356 0.955814052 1.076834744 1.001823777 0.99063624 1.103353079 0.867477375 1 11.95919581 -6.37956023 1.121831841 0.930964963 1.034309366 0.381879421 0.060624514 0.470514216 1.17495113 0.012714968 0.024062707 4.17E-07 6.37956023 0.103344403 KNS(ph)STDQGSDEEGSLQK ddPTM_HeLa_CUDC101_4h_R1 1 KNSSTDQGSDEEGSLQK 17 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 KNS(0.236)S(0.236)T(0.236)DQGS(0.236)DEEGS(0.056)LQK 62.303 0.023601 14036000 1567.9 1200.6 1304 1250.3 1276.2 1260.7 1268.1 814.78 1240.7 1627.9 TRUE FALSE FALSE 1384.113139 1237.589063 1374.498184 1301.292638 1182.057269 1236.654248 1317.011042 907.5312617 1189.557821 1618.217178 0.855332126 0.764785518 0.84939043 0.804152036 0.730468867 0.764207836 0.813865444 0.560821671 0.735103938 1 10.66018953 -6.378269691 0.051881738 1.604049613 5.32E-18 0.087363053 0.101551386 23.29737098 0.535791139 7.263258209 9.178861694 4.19E-07 6.378269691 -1.604049613 IMVGS(ph)TDDPSVFSLPDSK ddPTM_HeLa_CUDC101_4h_R1 2 IMVGSTDDPSVFSLPDSK 18 0 O43741 O43741 PRKAB2 5-AMP-activated protein kinase subunit beta-2 1 0 IMVGS(0.816)T(0.184)DDPSVFSLPDSK;IMVGS(0.853)T(0.119)DDPS(0.028)VFSLPDSK ; 268.12 4.10E-72 16813000 5441.8 4640.2 4306.7 4099.5 4708.1 3464.1 4363.7 4093.5 4605.8 4752.1 TRUE FALSE FALSE 4803.920453 4783.159062 4539.533229 4266.69533 4360.792843 3398.028064 4532.009371 4559.487494 4415.946975 4723.834298 1.016953633 1.012558604 0.960984857 0.903227137 0.923146869 0.719336846 0.959392113 0.965209024 0.934822582 1 12.20574264 -6.377880336 1.947813857 1.008779847 0.886010328 0.301864394 0.068183717 0.235070702 1.748106764 0.010186906 0.01704052 4.19E-07 6.377880336 -0.122769519 SKS(ph)NPDFLK ddPTM_HeLa_CUDC101_4h_R1 1 SKSNPDFLK 9 1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;H0Y2S9;H7C3G6;H0Y7E2;J3QL44;K7EL39;J3QRL2 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.002)KS(0.998)NPDFLK 138.42 0.010374 36668000 2769.5 2486.1 2303 2332.4 2124.1 1982.6 2309.9 1787 2124.2 2755.4 TRUE FALSE FALSE 2444.863408 2562.693794 2427.507146 2427.525353 1967.409375 1944.785208 2398.993617 1990.424857 2036.639577 2739.010758 0.89260818 0.935627502 0.88627149 0.886278138 0.718291949 0.710031971 0.875861334 0.726694793 0.743567571 1 11.41943922 -6.377318666 0.267137081 1.008528091 0.694598033 0.048371749 0.096008392 1.312643011 0.212424142 0.059348171 0.145984436 4.19E-07 6.377318666 -0.313930058 SIEEGDGAFGRS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SIEEGDGAFGRSPR 14 1 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 SIEEGDGAFGRS(1)PR 70.563 0.025409 6156800 3422.1 3222.6 3151.8 3480.5 3775.2 3159.8 3353 2652.7 3534.3 3509.7 TRUE FALSE FALSE 3020.966626 3321.884486 3322.195842 3622.449834 3496.711017 3099.53208 3482.326333 2954.672645 3388.614658 3488.824148 0.865898222 0.952150164 0.952239408 1.038301066 1.002260609 0.8884174 0.998137534 0.84689641 0.971277002 1 11.76852517 -6.376645182 0.003282969 1.880544089 8.32E-08 0.025141021 0.060284481 100761.0204 144.209928 40991.21417 41612.37726 4.20E-07 6.376645182 -1.880544006 VALS(ph)DDETK ddPTM_HeLa_CUDC101_4h_R1 2 VALSDDETK 9 0 H0YD46;Q15054-3;Q15054-2;Q15054 H0YD46 POLD3 DNA polymerase delta subunit 3 1 0 VALS(0.996)DDET(0.004)K;VALS(0.996)DDET(0.004)K ; 123.51 0.004852 54335000 7823.6 6458 6012.6 6248.4 6216.9 6299 5525.3 5085.9 6793.3 7486.8 TRUE FALSE FALSE 6906.529468 6656.963325 6337.659343 6503.23676 5758.291673 6178.85707 5738.412672 5664.858298 6513.277299 7442.268181 0.928014054 0.894480441 0.851576319 0.873824566 0.773728053 0.830238433 0.771056959 0.761173632 0.875173689 1 12.86152666 -6.376467126 0.290273019 1.012601405 0.71123735 0.632020584 0.043637082 0.373252794 0.068838164 0.016096441 0.040865465 4.20E-07 6.376467126 -0.301364055 LVSEK(ac)LASYQAAR ddPTM_HeLa_CUDC101_4h_R1 2 LVSEKLASYQAAR 13 1 H0YBG3;A0A0B4J1R1;H0YBT0;A0A087WUS5;P01106;P01106-2;A0A494C1T8 H0YBG3 MYC Myc proto-oncogene protein 0 1 ; LVSEK(1)LASYQAAR;LVSEK(1)LASYQAAR 242.97 5.01E-32 46304000 2336.81 1707.4 615.19 624.23 833.35 859.34 806.3 595.14 1613.85 997.81 FALSE TRUE FALSE 2062.892674 1760.00297 648.4490322 649.6887976 771.8754308 842.9495213 837.3992611 662.888332 1547.32642 991.8749817 2.079791014 1.774420166 0.653760851 0.655010772 0.778198306 0.849854605 0.84425888 0.668318431 1.56000146 1 9.954014481 -6.755463339 24.97716732 1.543987479 0.748887554 0.722050001 0.260934182 96.85349019 404802.3637 0.066135879 0.092130198 1.76E-07 6.755463339 -0.795099925 EVPSKEEPS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 EVPSKEEPSPVK 12 1 P46821;D6RA40;D6RA32 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 EVPS(0.003)KEEPS(0.997)PVK;EVPS(0.008)KEEPS(0.992)PVK ; 134.88 0.0013764 25453000 5876.3 3920.2 4136 3567.3 3258.08 3709.6 3636 3421.6 3482.71 4028.9 TRUE FALSE FALSE 5187.489022 4040.976715 4359.604671 3712.789913 3017.737929 3638.845561 3776.241738 3811.101113 3339.15122 4004.935924 1.295273912 1.008999093 1.088557908 0.927053512 0.753504672 0.908590207 0.942896918 0.951601021 0.833758962 1 11.96756345 -6.375128246 2.101655451 1.133771551 0.888922299 0.099581609 0.132299804 0.225263813 1.948139787 0.020249459 0.033534413 4.22E-07 6.375128246 -0.244849252 LVSK(ac)LDLEER ddPTM_HeLa_CUDC101_4h_R1 1 LVSKLDLEER 10 1 Q14687-3;Q14687;Q14687-2;H0Y613 Q14687-3 GSE1 Genetic suppressor element 1 0 1 LVSK(1)LDLEER 102.95 0.0093136 1100200 0 147.61 135.23 423.91 496.93 535.25 716.01 768.67 47.246 0 FALSE TRUE FALSE 0 152.1576891 142.5409428 441.1988821 460.2724639 525.040998 743.6267455 856.1722857 45.29849988 0 0 S(ph)APAMQSSGSFNYARPK ddPTM_HeLa_CUDC101_4h_R1 1 SAPAMQSSGSFNYARPK 17 1 Q8WX93-3;Q8WX93;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 S(0.979)APAMQS(0.009)S(0.012)GSFNYARPK 54.008 0.038853 8197500 757.42 813.68 777.72 896.53 1093.5 936.07 1026.2 710.52 924.84 875.63 TRUE FALSE FALSE 668.6363758 838.7485164 819.7658957 933.0943685 1012.834684 918.2160243 1065.780878 791.4027248 886.7177038 870.4217138 0.768175202 0.963611664 0.941803131 1.072002632 1.16361376 1.054909373 1.22444197 0.909217581 1.018721948 1 9.765570737 -6.374644862 2.132953463 0.892877118 1.098529576 0.302145393 0.102663576 0.233026956 2.075326651 0.017728463 0.02930484 4.22E-07 6.374644862 0.205652459 GSTDS(ph)LDSLSSR ddPTM_HeLa_CUDC101_4h_R1 1 GSTDSLDSLSSR 12 0 Q9ULJ8-3;Q9ULJ8;Q9ULJ8-4;Q9ULJ8-5 Q9ULJ8-3 PPP1R9A Neurabin-1 1 0 GS(0.011)T(0.167)DS(0.821)LDS(0.001)LSSR 101.45 0.010418 11152000 1997.4 1981.9 1757.8 1545 1956.1 1854.8 1646.2 1485.1 2278.3 1903 TRUE FALSE FALSE 1763.2678 2042.95999 1852.831985 1608.011778 1811.8024 1819.42278 1709.694485 1654.157781 2184.38751 1891.680871 0.932116948 1.07997074 0.979463298 0.850043896 0.957773812 0.961802177 0.903796466 0.874438076 1.154733625 1 10.88545301 -6.373220465 24.99964162 0.978099997 0.914812055 0.294275776 0.073602397 24.45429626 5440.179164 0.007958125 0.012156237 4.23E-07 6.373220465 -0.063287941 LVSSDPEINTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 LVSSDPEINTKK 12 1 Q9Y266 Q9Y266 NUDC Nuclear migration protein nudC 0 1 LVSSDPEINTK(1)K 147.62 0.00016779 745480 998.01 588.71 415.05 616.2 1377.1 992.05 964.66 951.89 1186.6 688.83 FALSE TRUE FALSE 881.0247807 606.8474573 437.4888585 641.3312994 1275.514077 973.1282991 1001.867259 1060.24931 1137.687846 684.7328085 1.286669442 0.88625439 0.638919083 0.936615409 1.862790947 1.4211796 1.463150658 1.548413186 1.661506257 1 9.41939733 -5.774825039 25 1.063970606 1.55506671 0.445910872 0.275739062 141.561769 264390.7358 0.034819648 0.063376889 1.68E-06 5.774825039 0.491096103 SVRDEVFHTDQDDPS(ph)S(ph)SDDEGMPYTRPVK ddPTM_HeLa_CUDC101_4h_R1 2 SVRDEVFHTDQDDPSSSDDEGMPYTRPVK 29 2 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 2 0 S(0.01)VRDEVFHT(0.034)DQDDPS(0.761)S(0.58)S(0.543)DDEGMPY(0.04)T(0.033)RPVK;SVRDEVFHT(0.001)DQDDPS(0.665)S(0.665)S(0.665)DDEGMPY(0.003)T(0.002)RPVK ; 61.141 0.00093245 21204000 2117.37 2135.8 2089.7 2339.51 3232.6 2692.9 2377.3 1765.48 2693.8 2252.5 TRUE FALSE FALSE 1869.175098 2201.601466 2202.675503 2434.92533 2994.137538 2641.537419 2468.993257 1966.455107 2582.760424 2239.10203 0.834787818 0.983251963 0.983731636 1.087456176 1.337204602 1.179730706 1.102671171 0.87823381 1.153480453 1 11.12870455 -6.372688369 2.453372837 0.925154115 1.133785076 0.10672526 0.134063669 0.237009049 2.785091115 0.019655298 0.031941209 4.24E-07 6.372688369 0.208630962 DAQRLS(ph)PIPEEVPK ddPTM_HeLa_CUDC101_4h_R1 3 DAQRLSPIPEEVPK 14 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 DAQRLS(1)PIPEEVPK;DAQRLS(1)PIPEEVPK;DAQRLS(1)PIPEEVPK ;; 88.282 0.0093101 448050000 18690.2 14816.4 14257 14521.1 14065 15290.2 13878 12866.4 15317.4 15052.4 TRUE FALSE FALSE 16499.36309 15272.87572 15027.77655 15113.33322 13027.45297 14998.56491 14413.27911 14331.05897 14686.01029 14962.86766 1.10268723 1.020718493 1.004337998 1.010055931 0.870652155 1.002385723 0.963269838 0.957774893 0.981497038 1 13.86909908 -6.372092188 1.734337181 1.047641825 0.955032763 0.291625813 0.046523155 0.265487181 1.567023678 0.008152555 0.013936726 4.25E-07 6.372092188 -0.092609062 DSQS(ph)PDSAWR ddPTM_HeLa_CUDC101_4h_R1 1 DSQSPDSAWR 10 0 O94875-12;O94875-11;O94875-9;O94875-8;C9J4Z9;C9IZT7;C9JWC3;C9JN77;C9JI79;C9J372;C9JZ60;C9JDX2;C9JBB0;C9JFS9;C9JC90;C9J620;C9JM25 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 DS(0.098)QS(0.896)PDS(0.006)AWR 130.15 0.0023485 20568000 2354.5 1889.3 1988.6 2406.8 2335 2128.2 2207.5 2300.9 2506.9 2199.2 TRUE FALSE FALSE 2078.509079 1947.507094 2096.109731 2504.959707 2162.751702 2087.608131 2292.644014 2562.825155 2403.564521 2186.119061 0.950775791 0.89085134 0.958826886 1.145847796 0.989311031 0.954937985 1.048727883 1.172317282 1.099466431 1 11.09415626 -6.371958413 21.82188612 0.96713139 1.051585632 0.201642276 0.078381942 9.838879237 1927.437662 0.010524655 0.016076673 4.25E-07 6.371958413 0.084454242 RQS(ph)PEPSPVTLGR ddPTM_HeLa_CUDC101_4h_R1 1 RQSPEPSPVTLGR 13 1 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 RQS(0.843)PEPS(0.044)PVT(0.113)LGR 164.92 5.18E-05 102330000 2124.7 2335.6 1896.3 1756.2 1669.9 1951.4 1865.4 1563.8 1579.5 2326.2 TRUE FALSE FALSE 1875.645887 2407.557068 1998.819714 1827.825427 1546.714804 1914.180296 1937.349103 1741.816671 1514.392341 2312.363659 0.811137937 1.041167144 0.864405435 0.790457599 0.668889081 0.827802447 0.837821982 0.753262431 0.654910976 1 11.17515259 -6.370859448 3.765829522 0.919157268 0.775903641 0.119883195 0.110570211 0.19962994 5.115613602 0.013839081 0.021630335 4.26E-07 6.370859448 -0.143253627 QPAPGGGGGGGPS(ph)PCGPGGGGR ddPTM_HeLa_CUDC101_4h_R1 2 QPAPGGGGGGGPSPCGPGGGGR 22 0 Q9H6S0;D6RF50;D6RA70 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 QPAPGGGGGGGPS(1)PCGPGGGGR;QPAPGGGGGGGPS(1)PCGPGGGGR ; 193.76 8.56E-19 11675100 971.09 819.52 641.71 576.42 700.22 610.46 606.95 388.9 517.65 599.63 TRUE FALSE FALSE 857.2603023 844.7684398 676.4027837 599.9288991 648.5661656 598.8164926 630.3602648 433.170804 496.3122479 596.0633741 1.438203284 1.417246012 1.134783335 1.006485091 1.088082566 1.004618835 1.057539 0.726719377 0.832650133 1 9.219321917 -6.370835247 3.475521343 1.229887014 0.987599299 0.164118653 0.193559731 0.272462734 6.124328223 0.030962313 0.048677928 4.26E-07 6.370835247 -0.242287715 LVVLDEELEGISPDELKDELPER ddPTM_HeLa_CUDC101_4h_R1 1 LVVLDEELEGISPDELKDELPER 23 1 G3V4P8;P60983 G3V4P8 GMFB Glia maturation factor beta 0 0 92.492 0.00022876 41025000 369.42 257.75 315.17 317.91 449.59 284.19 415.64 272.38 256.78 317.71 FALSE FALSE TRUE 326.1171476 265.690972 332.2090435 330.8757439 416.4246414 278.7695492 431.671374 303.3866382 246.1954197 315.8202468 1.032603675 0.841272764 1.0518928 1.047671095 1.318549541 0.882684223 1.366826156 0.960630743 0.779542864 1 8.302959853 -5.987224986 24.95506818 1.004504325 1.137612692 0.189774614 0.161831957 291.8212932 570048.1341 0.018851591 0.034157063 1.03E-06 5.987224986 0.133108367 LVVLGIRPIR ddPTM_HeLa_CUDC101_4h_R1 2 LVVLGIRPIR 10 1 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 0 0 ; ; 131.22 6.02E-06 0 1049.97 1078.54 781.41 958.23 568.52 574.53 869.28 789.98 679.2 605.48 FALSE FALSE TRUE 926.8941083 1111.768539 823.6553882 997.3107612 526.5814123 563.5717975 902.8084208 879.90813 651.2030885 601.878578 1.540001824 1.847164162 1.368474337 1.656996606 0.874896418 0.936354637 1.499984305 1.461936281 1.081950932 1 9.233328659 -5.763747587 24.99974982 1.344866153 1.196846759 0.088692582 0.301677686 189.5575624 2053092.773 0.05171917 0.097118322 1.72E-06 5.763747587 -0.148019393 REEMHLEDS(ph)ANFIK ddPTM_HeLa_CUDC101_4h_R1 1 REEMHLEDSANFIK 14 1 H7C5W9;P16615-5;P16615-2;P16615-3;P16615-4;P16615 H7C5W9 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 1 0 REEMHLEDS(1)ANFIK 62.69 0.0033342 0 2129.3 1873 1588.2 1596.4 1724 1287 1617 1328.4 1799.2 1964.6 TRUE FALSE FALSE 1879.706682 1930.70491 1674.062896 1661.508092 1596.823955 1262.452619 1679.368232 1479.619686 1725.036214 1952.914472 0.962513571 0.988627478 0.857212602 0.85078385 0.817662001 0.646445422 0.859929227 0.757646947 0.883313755 1 10.93141305 -6.370449468 1.102758716 0.985431599 0.765285947 0.621924155 0.063038195 0.160522979 0.387315883 0.009127145 0.017461529 4.26E-07 6.370449468 -0.220145652 SFS(ph)LEGLTGGAGVGNKPSSSLEVSSANAEELR ddPTM_HeLa_CUDC101_4h_R1 1 SFSLEGLTGGAGVGNKPSSSLEVSSANAEELR 32 1 Q12802-4;Q12802;Q12802-2;A0A087WTD7;A8MYJ1;A0A087WY36;H0YMW2;H0YLH1 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 S(0.066)FS(0.763)LEGLT(0.17)GGAGVGNKPSSSLEVSSANAEELR 93.751 5.61E-10 30344000 624.23 487.85 480.18 399.68 388.05 471.64 400.88 413.36 614.79 513.67 TRUE FALSE FALSE 551.0587057 502.8800803 506.1399833 415.980678 359.4243246 462.6442528 416.3420759 460.4152315 589.448096 510.614668 1.079206572 0.984852398 0.99123667 0.814666527 0.703905209 0.90605359 0.815374297 0.901688221 1.154389274 1 8.996091171 -6.364507323 3.348604411 1.03322038 0.824626141 0.70600169 0.06921334 0.098372863 2.085105308 0.009477467 0.014971948 4.32E-07 6.364507323 -0.208594239 EVS(ph)S(ph)RPSTPGLSVVSGISATSEDIPNKIEDLR ddPTM_HeLa_CUDC101_4h_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 EVS(0.374)S(0.374)RPS(0.374)T(0.374)PGLS(0.31)VVS(0.112)GIS(0.061)AT(0.013)S(0.009)EDIPNKIEDLR 44.264 0.017217 234780000 1278.6 1053.6 975.99 747.71 934.59 918.23 823.42 669.74 915.67 1017.7 TRUE FALSE FALSE 1128.724446 1086.060167 1028.754972 778.2048457 865.6471577 900.7162926 855.1795852 745.9804944 877.925695 1011.646675 1.115729903 1.0735568 1.016911336 0.769245691 0.855681315 0.890346714 0.845334252 0.737392326 0.867818495 1 9.982489791 -6.364282821 4.889519356 1.056929647 0.827422265 0.593099076 0.077337137 0.077584873 2.94286183 0.00918218 0.014168434 4.32E-07 6.364282821 -0.229507382 S(ph)ESVEGFLSPSR ddPTM_HeLa_CUDC101_4h_R1 3 SESVEGFLSPSR 12 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.616)ES(0.384)VEGFLSPSR;S(0.895)ES(0.105)VEGFLSPSR;S(0.804)ES(0.195)VEGFLSPSR ;; 153.81 0.00034224 43104000 4680.2 3792.7 3564.6 3550.3 4234.5 3685.3 3347.8 3137.3 3945.3 4354.5 TRUE FALSE FALSE 4131.594051 3909.548592 3757.313058 3695.09658 3922.129371 3615.009043 3476.925767 3494.437551 3782.673064 4328.59924 0.954487542 0.903190241 0.868020542 0.85364719 0.906096673 0.835145238 0.803245016 0.807290617 0.873879251 1 12.07968452 -6.364124313 0.304959884 1.011836659 0.767102592 0.421277878 0.045153551 0.477296814 0.094738221 0.016490743 0.043022997 4.32E-07 6.364124313 -0.244734067 PAEKPAETPVATSPT(ph)ATDSTSGDSSR ddPTM_HeLa_CUDC101_4h_R1 1 PAEKPAETPVATSPTATDSTSGDSSR 26 1 P54727;P54727-2;H0Y579 P54727 RAD23B UV excision repair protein RAD23 homolog B 1 0 PAEKPAETPVAT(0.172)S(0.317)PT(0.492)AT(0.013)DS(0.002)T(0.002)S(0.002)GDSSR 124.98 3.58E-10 18040000 3315.4 2825 2080.8 3042.5 2092.5 2371.4 2150.3 1914.1 2607.9 3266.3 TRUE FALSE FALSE 2926.773838 2912.034902 2193.294342 3166.586301 1938.140444 2326.169496 2233.237791 2131.993407 2500.401258 3246.871902 0.901413399 0.896873973 0.67550997 0.975272938 0.596925442 0.716434022 0.687812103 0.656629972 0.770095444 1 11.66483475 -6.363425511 0.343826787 1.003560931 0.599380291 0.300667134 0.114244375 0.792365214 0.192781635 0.045514852 0.122277201 4.33E-07 6.363425511 -0.40418064 LWHLDPDTEYEIR ddPTM_HeLa_CUDC101_4h_R1 1 LWHLDPDTEYEIR 13 0 H0YDP9;Q5TG12;E9PGC5;Q15262;Q15262-2;Q15262-3;Q15262-4 H0YDP9 PTPRK Protein-tyrosine-phosphatase;Receptor-type tyrosine-protein phosphatase kappa 0 0 142.12 0.00063093 3044300 2853.2 2684 2445.3 2022.5 2716 2926.5 2679.2 2700.3 2965.9 2810.1 FALSE FALSE TRUE 2518.752221 2766.690859 2577.500315 2104.986292 2515.646091 2870.681888 2782.537641 3007.691237 2843.644347 2793.3854 0.901684465 0.99044366 0.92271561 0.753560999 0.900572506 1.027671258 0.996116627 1.076719037 1.017992128 1 11.44779892 -5.24613504 22.66789181 0.934594598 1.029763794 0.307551282 0.072696832 270.5607113 400734.3882 0.010913469 0.027669472 5.67E-06 5.24613504 0.095169196 DSENT(ph)PVKGGTVADLDEQDEETVTAGGKEDEDPAK ddPTM_HeLa_CUDC101_4h_R1 1 DSENTPVKGGTVADLDEQDEETVTAGGKEDEDPAK 35 2 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 DS(0.012)ENT(0.559)PVKGGT(0.427)VADLDEQDEET(0.001)VTAGGKEDEDPAK 57.423 0.00063835 24800000 2460.2 1619.6 1921.5 1568.4 1314.5 1690.2 1138.1 1065.2 1803.1 2419 TRUE FALSE FALSE 2171.819085 1669.497956 2025.382102 1632.366131 1217.531954 1657.962251 1181.996898 1186.458062 1728.775455 2404.61168 0.903189111 0.694290047 0.842290719 0.678848125 0.506332047 0.689492721 0.49155417 0.493409423 0.718941636 1 11.23158822 -6.362817083 0.405974799 1.002937635 0.445819794 0.538972157 0.112819629 0.337521002 0.110845898 0.027648613 0.075240692 4.34E-07 6.362817083 -0.557117841 LWSLDSDEPVADIEGHTVR ddPTM_HeLa_CUDC101_4h_R1 2 LWSLDSDEPVADIEGHTVR 19 0 O43172-2;O43172 O43172-2 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 0 0 ; ; 160.55 1.69E-10 2737400 2088.22 1948.5 1448.92 1758.9 1804.7 1842.9 1865.15 1838.2 1896.39 2061.67 FALSE FALSE TRUE 1843.442017 2008.530975 1527.252998 1830.635545 1671.570876 1807.749753 1937.08946 2047.453258 1818.220002 2049.407095 0.899500163 0.980054661 0.745216995 0.893251296 0.815636327 0.882084266 0.945195059 0.999046633 0.887193182 1 11.00099088 -8.893538401 0.671961045 1.002716267 0.889186781 0 0.078125367 0.875127281 0.715586838 0.053610236 0.015951777 1.28E-09 8.893538401 -0.113529486 LWSVHGQK(ac)R ddPTM_HeLa_CUDC101_4h_R1 4 LWSVHGQKR 9 1 A0A5F9ZI22;A0A5F9ZH29;A0A5K1VW85;O75419-2;O75419;O75419-3 A0A5F9ZI22 CDC45 Cell division control protein 45 homolog 0 1 ;;; LWSVHGQK(1)R;LWSVHGQK(1)R;LWSVHGQK(1)R;LWSVHGQK(1)R 113.41 0.003155 161528400 153.89 65.922 136.95 160.02 192.01 280.76 307.32 0 125.97 0 FALSE TRUE FALSE 135.8512475 67.95297868 144.3539313 166.5463073 177.8458048 275.4049708 319.1734353 0 120.7774633 0 0 TSAALSTVGS(ph)AISR ddPTM_HeLa_CUDC101_4h_R1 1 TSAALSTVGSAISR 14 0 O43399-2;O43399-4;O43399;O43399-3;O43399-5;O43399-7;A0A087WYR3;O43399-6 O43399-2 TPD52L2 Tumor protein D54 1 0 TSAALS(0.011)T(0.002)VGS(0.986)AIS(0.001)R 97.767 0.0089203 7464200 679.62 631.7 642.66 677.75 992.87 702 764.72 636.4 766.65 639.91 TRUE FALSE FALSE 599.9559738 651.1619283 677.4041435 705.3915745 919.6279582 688.6105196 794.2155066 708.8452036 735.0483625 636.1037869 0.943173089 1.02367246 1.064927072 1.108925287 1.445719987 1.082544286 1.248562771 1.114354636 1.155547849 1 9.313118365 -6.362477982 1.950211304 0.976219746 1.215527573 0.323307492 0.111404722 0.172596487 1.285015851 0.014547566 0.024484763 4.34E-07 6.362477982 0.239307828 VDPSLMEDSDDGPS(ph)LPTK ddPTM_HeLa_CUDC101_4h_R1 1 VDPSLMEDSDDGPSLPTK 18 0 Q5T092;A0A0A0MR06;Q5T091;O15258 Q5T092 RER1 Protein RER1 1 0 VDPS(0.005)LMEDS(0.116)DDGPS(0.804)LPT(0.075)K 78.964 0.010486 5576200 1458.5 1279 1045.7 1096.2 884.96 1126.6 959.69 1002.4 1110.7 1187.8 TRUE FALSE FALSE 1287.536841 1318.404474 1102.233705 1140.907774 819.6782639 1105.111982 996.7055648 1116.509164 1064.916476 1180.734913 1.090453773 1.116596503 0.93351496 0.966269195 0.694210237 0.93595266 0.844139996 0.945605277 0.901909874 1 10.20546939 -6.361784763 2.187671088 1.048329573 0.863168932 0.361371491 0.090826 0.178663737 1.67222579 0.012372575 0.020485074 4.35E-07 6.361784763 -0.185160641 TS(ph)PAKQQAPPVR ddPTM_HeLa_CUDC101_4h_R1 1 TSPAKQQAPPVR 12 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 0 T(0.065)S(0.935)PAKQQAPPVR 89.46 0.01247 90149000 2849.4 4827.7 5256.5 5107.7 10817 6345.6 6656.4 10014 5769.4 3334.3 TRUE FALSE FALSE 2515.397651 4976.435715 5540.68229 5316.014083 10019.05146 6224.568252 6913.139578 11153.95328 5531.58289 3314.467435 0.758914577 1.501428453 1.671665931 1.603881826 3.022823925 1.87799952 2.085746719 3.365232424 1.668920573 1 11.69456136 -6.361523015 0.884701477 0.87857535 2.563235248 0.545938534 0.517021771 0.218868809 0.340181884 0.083280113 0.173995997 4.35E-07 6.361523015 1.684659898 QEES(ph)ESPVERPLKENPPNK ddPTM_HeLa_CUDC101_4h_R1 1 QEESESPVERPLKENPPNK 19 2 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3;D6RBF8 H3BLV9 SRPK1 SRSF protein kinase 1 1 0 QEES(0.563)ES(0.437)PVERPLKENPPNK 47.371 0.033852 17881000 3023.1 2921.2 2662.9 2371 2692.8 2780.6 2231.7 2488.2 2994.3 3042.2 TRUE FALSE FALSE 2668.736801 3011.19871 2806.864429 2467.699628 2494.157509 2727.564688 2317.777417 2771.44663 2870.873687 3024.104859 0.882488182 0.995732241 0.928163724 0.816009941 0.824758937 0.901941174 0.766434209 0.916451896 0.949330073 1 11.56229245 -6.361458475 5.247202429 0.94733577 0.843025256 0.528304258 0.050231811 0.163317136 6.892882369 0.008802067 0.013551685 4.35E-07 6.361458475 -0.104310514 LYAVFTDYEHDK ddPTM_HeLa_CUDC101_4h_R1 1 LYAVFTDYEHDK 12 0 Q8TCS8 Q8TCS8 PNPT1 "Polyribonucleotide nucleotidyltransferase 1, mitochondrial" 0 0 107.09 0.00039171 0 1797.7 1558.3 1052 1547.3 1273.4 1255.7 1174.7 923.44 1463.9 1482.4 FALSE FALSE TRUE 1586.976331 1606.309376 1108.874302 1610.405582 1179.463819 1231.749615 1220.008572 1028.560677 1403.557422 1473.582619 1.076951038 1.090070794 0.752502295 1.092850554 0.800405626 0.835887719 0.827920034 0.698000006 0.952479626 1 10.52511223 -5.474590272 0.616456573 1.037998485 0.712018933 0.458535948 0.103425503 0.675776742 0.378548441 0.019289274 0.119473394 3.35E-06 5.474590272 -0.325979552 LYDK(ac)IDPEK ddPTM_HeLa_CUDC101_4h_R1 2 LYDKIDPEK 9 1 I3L505;O14561 I3L505 NDUFAB1 "Acyl carrier protein;Acyl carrier protein, mitochondrial" 0 1 ; LYDK(1)IDPEK;LYDK(1)IDPEK 121.83 0.0017373 2076720 4572.7 2244.63 2334.52 2097.97 4381.3 3798.2 3540.2 3553.3 3128.1 3441.6 FALSE TRUE FALSE 4036.695038 2313.78439 2460.731213 2183.534285 4058.100228 3725.755663 3676.7467 3957.793309 2999.158394 3421.12921 1.179930599 0.676321836 0.719274562 0.638249581 1.186187361 1.089042662 1.074717286 1.156867533 0.876657445 1 11.74025688 LYDLNHNEIGELIR ddPTM_HeLa_CUDC101_4h_R1 2 LYDLNHNEIGELIR 14 0 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 ; ; 138.31 0.00053489 21906000 3245.7 3075.2 3503.8 2892.6 3105.3 3531.5 3101.4 2650.6 3010.6 3536.9 FALSE FALSE TRUE 2865.243966 3169.943267 3693.226026 3010.572731 2876.228206 3464.142521 3221.022037 2952.33359 2886.501794 3515.862362 0.814947706 0.901611878 1.050446703 0.856282875 0.818071901 0.985289572 0.91613997 0.839718193 0.820993969 1 11.77966288 -9.636022161 1.474154379 0.999746057 0.8894293 0 0.089640885 0.491760443 1.927539936 0.052603516 0.012080007 2.31E-10 9.636022161 -0.110316757 TASESISNLSEAGS(ph)IKK ddPTM_HeLa_CUDC101_4h_R1 2 TASESISNLSEAGSIKK 17 1 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 T(0.007)AS(0.033)ES(0.131)IS(0.005)NLS(0.005)EAGS(0.82)IKK;TASESISNLSEAGS(1)IKK ; 99.881 0.0017608 90324000 3733.6 2915.5 2907.6 2668.8 2767 2761.6 2837.4 2815.4 3131.4 2987.8 TRUE FALSE FALSE 3295.953068 3005.323099 3064.793651 2777.6452 2562.883923 2708.927081 2946.839468 3135.893756 3002.322367 2970.028433 1.109737884 1.011883612 1.031907175 0.935225121 0.862915619 0.912087929 0.992192343 1.055846375 1.010873274 1 11.53626103 -6.360458803 3.805218536 1.049265512 0.94681838 0.326743655 0.056023171 0.20310161 5.379847167 0.010136573 0.015870823 4.36E-07 6.360458803 -0.102447132 GAANASGSS(ph)PDAPAK ddPTM_HeLa_CUDC101_4h_R1 3 GAANASGSSPDAPAK 15 0 E7EPJ7;O75962-5;O75962-4;O75962 E7EPJ7 TRIO Triple functional domain protein 1 0 GAANASGS(0.049)S(0.951)PDAPAK;GAANASGS(0.255)S(0.745)PDAPAK;GAANAS(0.001)GS(0.084)S(0.915)PDAPAK ;; 249.54 7.77E-56 80539000 19476.1 14816.3 15043.4 14392.2 13665.6 14856.7 13832 10680 15368.3 16831.7 TRUE FALSE FALSE 17193.14108 15272.77264 15856.69171 14979.17612 12657.51591 14573.3332 14365.50487 11895.76803 14734.81217 16731.5843 1.027585958 0.912810907 0.947710117 0.895263464 0.756504327 0.871007368 0.85858605 0.710976786 0.880658514 1 14.03028644 -6.358735898 0.889918634 1.013423279 0.799334255 0.495444947 0.065896268 0.194073837 0.305190777 0.009408545 0.019648032 4.38E-07 6.358735898 -0.214089023 LYEEDDLDRLEQMEDSEGTVR ddPTM_HeLa_CUDC101_4h_R1 3 LYEEDDLDRLEQMEDSEGTVR 21 1 Q86W92-4;Q86W92;Q86W92-3;H0YFE4;Q86W92-2 Q86W92-4;Q86W92-2 PPFIBP1 Liprin-beta-1 0 0 ;; ;; 147.6 8.28E-07 23134900 2647.12 2290.32 2042.35 2186.52 2660.87 2484.57 2410.32 2273.04 2489.84 2623.89 FALSE FALSE TRUE 2336.828606 2360.882045 2152.765619 2275.695737 2464.582921 2437.180967 2503.28685 2531.793686 2387.207741 2608.282986 0.895926025 0.905147968 0.825357383 0.87248805 0.94490626 0.934400516 0.959745113 0.970674463 0.915241082 1 11.34888469 -3.250476276 13.66767261 0.934482392 0.92371096 0 0.049817856 0 0 0.008071463 0 0.000561725 3.250476276 -0.010771432 LYEEK(ac)TGNAWHSK ddPTM_HeLa_CUDC101_4h_R1 2 LYEEKTGNAWHSK 13 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 1 ; LYEEK(1)TGNAWHSK;LYEEK(1)TGNAWHSK 142.1 0.00095403 2601700 1585.97 1450.2 1309.83 1394.2 1646.62 1356.12 1784.88 1558.19 1628.9 1541.55 FALSE TRUE FALSE 1400.065001 1494.878943 1380.643372 1451.061502 1525.152123 1330.25427 1853.723419 1735.568051 1561.756053 1532.380792 0.913653452 0.975527069 0.900979299 0.946932714 0.99528272 0.868096414 1.20970155 1.132595801 1.019169687 1 10.58155913 -4.754097914 24.99998197 0.952231045 1.171148753 0.766177447 0.048325138 53.75457639 183046.2878 0.00635902 0.022853857 1.76E-05 4.754097914 0.218917708 LYENFISEFEHR ddPTM_HeLa_CUDC101_4h_R1 3 LYENFISEFEHR 12 0 J3KNQ3;A0A087WUL9;Q9UNM6;E9PPD2;E9PQG3 J3KNQ3 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 0 ;; ;; 147.26 0.00077889 20557100 18727.7 11742.4 11412.4 11987.4 15526.6 15197 13740.6 11505.6 15465.3 18591.3 FALSE FALSE TRUE 16532.4674 12104.16943 12029.38886 12476.29799 14381.23365 14907.14254 14270.57954 12815.351 14827.81379 18480.71812 0.894579274 0.654962072 0.650915662 0.675098116 0.778175045 0.806632212 0.772187501 0.693444427 0.802339698 1 14.1737332 -7.461477065 3.132441986 0.957488379 0.722583952 0.528219942 0.073040657 0.09324718 1.746830564 0.011833677 0.013116367 3.46E-08 7.461477065 -0.234904427 ESMEAS(ph)PEAMVK ddPTM_HeLa_CUDC101_4h_R1 6 ESMEASPEAMVK 12 0 A0A0A0MRP0;Q8IWC1-2;Q8IWC1-3;Q8IWC1-4;Q8IWC1 A0A0A0MRP0 MAP7D3 MAP7 domain-containing protein 3 1 0 ESMEAS(1)PEAMVK;ESMEAS(1)PEAMVK;ESMEAS(1)PEAMVK;ESMEAS(1)PEAMVK;ES(0.008)MEAS(0.992)PEAMVK;ES(0.001)MEAS(0.999)PEAMVK ;;;;; 206.74 2.81E-23 111332100 25211.2 22769.9 21025.3 20602.1 22416.5 21723.7 19289.9 20317.4 22796.1 23458.3 TRUE FALSE FALSE 22255.98135 23471.41363 22161.99132 21442.34269 20762.87945 21309.35662 20033.9179 22630.25069 21856.43511 23318.76899 0.95442351 1.006545999 0.95039285 0.919531503 0.890393462 0.91382854 0.85913274 0.970473643 0.937289405 1 14.50920401 -6.358462695 2.634474816 0.979975838 0.905692114 0.459897595 0.03235656 0.152490246 2.063324963 0.004659237 0.007550343 4.38E-07 6.358462695 -0.074283724 LYGDADYLEER ddPTM_HeLa_CUDC101_4h_R1 1 LYGDADYLEER 11 0 B4E1E0;P17812-2;P17812;A0A3B3IRI2 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 0 0 123.86 0.018866 11866000 3355.1 3074.8 2929.7 2737.2 3042.4 2887.2 2905.1 3054.8 2833.3 2782.2 FALSE FALSE TRUE 2961.820264 3169.530943 3088.088444 2848.834847 2817.968213 2832.13147 3017.15068 3402.546084 2716.510175 2765.651351 1.070930457 1.146034168 1.116586313 1.030077362 1.018916651 1.02403778 1.090936744 1.230287427 0.982231609 1 11.43340358 -13.52287875 0.15166698 0.671509546 1.114835772 0.304367671 0.06071476 78.01258369 0.803779646 7.586295756 0.146184008 3.00E-14 13.52287875 0.443326226 S(ph)LSPIIGK ddPTM_HeLa_CUDC101_4h_R1 1 SLSPIIGK 8 0 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0;Q9H4G0-4;H7C2K6;X6RC15 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 S(0.5)LS(0.5)PIIGK 109.29 0.011928 420710000 10626 9152 7928.4 7635.8 7794.2 7635 8110.4 6120.8 8513.4 8629.7 TRUE FALSE FALSE 9380.436388 9433.962272 8357.033286 7947.220929 7219.237394 7489.375096 8423.220845 6817.567131 8162.474049 8578.370161 1.093498673 1.099738306 0.97419826 0.926425507 0.841562821 0.873053384 0.981913894 0.794739211 0.95151805 1 13.06648785 -6.357937018 2.413486786 1.049182319 0.88255468 0.576963285 0.061472279 0.139580223 1.588425745 0.009146647 0.014976731 4.39E-07 6.357937018 -0.166627639 IWLS(ph)TETLANED ddPTM_HeLa_CUDC101_4h_R1 1 IWLSTETLANED 12 0 Q9NXD2 Q9NXD2 MTMR10 Myotubularin-related protein 10 1 0 IWLS(0.889)T(0.111)ETLANED 129.82 0.001705 1046100 803.76 397.17 562.71 644.73 757.53 697.57 632.36 602.69 632.83 423.97 TRUE FALSE FALSE 709.5444712 409.4063369 593.1318047 671.0248762 701.6485211 684.2650145 656.750337 671.2977934 606.7444795 421.4482076 1.683586401 0.971427401 1.407365826 1.592188231 1.664851122 1.623604045 1.558318022 1.592835801 1.439665583 1 8.719211537 -6.356963531 4.024424945 1.301490644 1.608387701 0.392887064 0.193473286 0.273591937 7.997644128 0.041781985 0.065217278 4.40E-07 6.356963531 0.306897057 LYGSAGPPPTGEEDTAEKDEL ddPTM_HeLa_CUDC101_4h_R1 2 LYGSAGPPPTGEEDTAEKDEL 21 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ; ; 256.33 3.07E-72 46494000 9676.8 8643.1 8619.3 8651.4 9846.8 9221.1 8509.4 8878.1 8823.8 9099.4 FALSE FALSE TRUE 8542.500173 8909.383666 9085.28543 9004.241487 9120.421182 9045.222881 8837.610408 9888.747017 8460.079229 9045.276364 0.944415608 0.984976391 1.0044232 0.995463392 1.008307631 0.999994087 0.977041502 1.093249849 0.935303565 1 13.14294887 RVTQHES(ph)DNENEIQIQNK ddPTM_HeLa_CUDC101_4h_R1 2 RVTQHESDNENEIQIQNK 18 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 RVT(0.115)QHES(0.885)DNENEIQIQNK;RVT(0.286)QHES(0.714)DNENEIQIQNK ; 119.18 5.03E-05 38336000 4052.3 3264.2 3514.1 3957.6 4525.2 4162.1 4026.9 4016.1 3728.1 3342.4 TRUE FALSE FALSE 3577.295537 3364.766133 3704.082876 4119.008034 4191.385011 4082.714877 4182.218882 4473.27659 3574.42614 3322.519256 1.076681657 1.012715314 1.114841658 1.239724353 1.261508117 1.228800968 1.258749328 1.34635084 1.075818036 1 11.69806185 -6.35694243 2.081994127 1.034949794 1.270181089 0.896824678 0.036511894 0.07487179 0.634758844 0.00641357 0.010713352 4.40E-07 6.35694243 0.235231296 LYK(ac)DDQLLDDGK ddPTM_HeLa_CUDC101_4h_R1 1 LYKDDQLLDDGK 12 1 B8ZZU8;Q15370;Q15370-2 B8ZZU8 TCEB2 Transcription elongation factor B polypeptide 2 0 1 LYK(1)DDQLLDDGK 134.98 0.00038772 396510 226.8 0 67.351 221.07 207.25 192.99 274.74 152.4 136.29 173.52 FALSE TRUE FALSE 200.2148478 0 70.99219879 230.0861901 191.9615804 189.3090373 285.3368138 169.7486 130.6720685 172.4878953 1.160747236 0 0.41157786 1.333926591 1.11289885 1.09752071 1.654242539 0.984118913 0.757572398 1 7.430351311 LYK(ac)VENK ddPTM_HeLa_CUDC101_4h_R1 1 LYKVENK 7 1 F5H008;A0A2R8YDQ0;Q9H267 F5H008 VPS33B Vacuolar protein sorting-associated protein 33B 0 1 LYK(1)VENK 85.265 0.038917 1214600 423.58 307.05 633.75 510.86 502.31 517.07 525.36 664.24 436.87 479.86 FALSE TRUE FALSE 373.9285945 316.5098466 668.012442 531.6950789 465.255592 507.2077512 545.6233112 739.8543966 418.8620337 477.0057714 0.783907904 0.663534627 1.400428427 1.114651249 0.975366798 1.063315754 1.143850544 1.551038669 0.878106847 1 8.897862912 -6.761741185 24.99999987 0.877523661 1.183779019 0.50997027 0.177677488 6.425247183 532254.4916 0.030095315 0.040962744 1.73E-07 6.761741185 0.306255358 ALDIDS(ph)DEESEPK ddPTM_HeLa_CUDC101_4h_R1 4 ALDIDSDEESEPK 13 0 Q96DR7-3;Q96DR7-4;Q96DR7 Q96DR7-3 ARHGEF26 Rho guanine nucleotide exchange factor 26 1 0 ALDIDS(1)DEESEPK;ALDIDS(0.949)DEES(0.051)EPK;ALDIDS(0.997)DEES(0.003)EPK;ALDIDS(0.996)DEES(0.004)EPK ;;; 238.88 1.49E-43 32761200 14963 11622.1 10943.1 11086.9 10341.5 10341.6 9596.7 8738.6 11424.2 13013.5 TRUE FALSE FALSE 13209.05982 11980.16313 11534.71709 11539.0717 9578.628148 10144.35121 9966.847934 9733.366901 10953.28964 12936.09512 1.021101012 0.926103512 0.891669161 0.892005786 0.740457461 0.784189596 0.770468046 0.752419243 0.846723029 1 13.65911457 -6.355970498 0.910251176 1.011186556 0.756625305 0.613806979 0.059506605 0.093822892 0.154369789 0.005478404 0.011356523 4.41E-07 6.355970498 -0.254561251 LYLEDDDPVQAEAYINR ddPTM_HeLa_CUDC101_4h_R1 2 LYLEDDDPVQAEAYINR 17 0 D6RD63;D6RAX7;D6RFN0;Q9BT78-2;Q9BT78 D6RD63 COPS4 COP9 signalosome complex subunit 4 0 0 ; ; 212.95 3.60E-23 13184100 1792.78 1660.61 1642.92 1339.4 1673.69 1787.53 1647.33 1476.75 1550.94 1878.62 FALSE FALSE TRUE 1582.633046 1711.771426 1731.741225 1394.026521 1550.225223 1753.435843 1710.86807 1644.857251 1487.009597 1867.445885 0.847485359 0.916637767 0.92733141 0.746488309 0.83013127 0.938948677 0.916154028 0.880805845 0.796279886 1 10.86685072 -9.365710587 0.881221591 1.007191631 0.873895445 0 0.083308323 0.55322064 0.700140439 0.05136722 0.010771076 4.31E-10 9.365710587 -0.133296187 DTPTSAGPNS(ph)FNK ddPTM_HeLa_CUDC101_4h_R1 2 DTPTSAGPNSFNK 13 0 Q8WW12;Q8WW12-3 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 0 DTPTSAGPNS(1)FNK;DTPTSAGPNS(1)FNK ; 184 6.44E-11 22132000 3845.5 3712.2 3248.6 3186.2 3351.6 2791.3 3167.8 3272.4 3760.9 3889.4 TRUE FALSE FALSE 3394.736319 3826.568482 3424.229142 3316.147008 3104.359145 2738.060603 3289.983107 3644.916789 3605.87411 3866.265676 0.878040105 0.98973242 0.88566835 0.857713175 0.802934771 0.708192564 0.850945947 0.942748661 0.932650369 1 11.91672506 -6.35538264 2.19800054 0.944311863 0.821633846 0.430086983 0.063047772 0.251172508 2.372506574 0.011540056 0.019143012 4.41E-07 6.35538264 -0.122678017 LYNNHEIR ddPTM_HeLa_CUDC101_4h_R1 3 LYNNHEIR 8 0 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 0 ;; ;; 124.08 0.0061863 28035300 13440.8 10926.2 9247.2 11656.6 10462.7 10579.1 10027.9 9916.7 8985.3 6171.6 FALSE FALSE TRUE 11865.2898 11262.82327 9747.131603 12132.00653 9690.887466 10377.32129 10414.67946 11045.57704 8614.922131 6134.891049 1.934066914 1.835863617 1.588802723 1.977542296 1.579634812 1.691524953 1.697614412 1.80045203 1.404250224 1 12.58282201 -9.331968409 0.96891697 0.983145533 1.767113958 0.597302735 0.172710763 0.177380606 0.287992831 0.099602555 0.024117135 4.66E-10 9.331968409 0.783968425 T(ph)SPQPESGIK ddPTM_HeLa_CUDC101_4h_R1 1 TSPQPESGIK 10 0 A0A1B0GVV3;Q5EBL4-3;Q5EBL4-2;Q5EBL4 A0A1B0GVV3 RILPL1 RILP-like protein 1 1 0 T(0.999)S(0.001)PQPESGIK 166.29 7.91E-05 28151000 6659.6 5201.2 5550.1 5534.8 4770.6 4931.6 4374.1 4465.4 5661.4 6498.3 TRUE FALSE FALSE 5878.971783 5361.442807 5850.155194 5760.533067 4418.682342 4837.537947 4542.810502 4973.723086 5428.034696 6459.647823 0.910107168 0.829989955 0.905646152 0.891772001 0.684043846 0.74888571 0.703259779 0.76996815 0.840298859 1 12.6572398 -6.352512814 0.342929463 0.998889314 0.669315598 0.486085855 0.06894164 0.608426019 0.146525849 0.028182407 0.076477701 4.44E-07 6.352512814 -0.329573716 SSLGQS(ph)ASETEEDTVSVSK ddPTM_HeLa_CUDC101_4h_R1 2 SSLGQSASETEEDTVSVSK 19 0 E9PPJ0;Q13435;E9PJ04;H0YCG1 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 SSLGQS(0.997)AS(0.003)ETEEDTVSVSK;S(0.006)S(0.006)LGQS(0.864)AS(0.124)ET(0.001)EEDTVSVSK ; 220.62 3.87E-33 18085000 4211 4199.3 3512.5 3725.6 3464.6 3773.5 3421 3328.3 3494.1 4353.2 TRUE FALSE FALSE 3717.392963 4328.675456 3702.396375 3877.546071 3209.02336 3701.526775 3552.949116 3707.180219 3350.071719 4327.306973 0.859054601 1.000316244 0.85558903 0.89606448 0.74157516 0.855388073 0.821053172 0.856694531 0.774170111 1 12.07925375 -6.351572445 1.848732756 0.936224114 0.82439335 0.127337761 0.074259301 0.273339046 1.828365336 0.010445836 0.017814941 4.45E-07 6.351572445 -0.111830765 LYPWGVVEVENPEHNDFLK ddPTM_HeLa_CUDC101_4h_R1 1 LYPWGVVEVENPEHNDFLK 19 0 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C2Y0 B5MCX3 2-Sep Septin-2 0 0 223.68 2.50E-33 17492000 1403.1 1289.4 1577.5 1531.9 1523.7 1072.1 1384.1 1355 1453.1 1446.1 FALSE FALSE TRUE 1238.630745 1329.124886 1662.784422 1594.377503 1411.299687 1051.651479 1437.485201 1509.247723 1393.202603 1437.498533 0.86165705 0.92460956 1.156720778 1.109133308 0.981774697 0.731584384 0.999990725 1.049912531 0.969185409 1 10.48934477 -4.527749077 24.99797859 0.950432913 1.037432177 0.032784125 0.113194433 256.6786445 1317467.674 0.017004581 0.064059371 2.97E-05 4.527749077 0.086999263 GRMES(ph)QER ddPTM_HeLa_CUDC101_4h_R1 1 GRMESQER 8 1 W5XKT8-2 W5XKT8-2 1 0 GRMES(1)QER 67.169 0.039889 11363000 461.83 429.1 340.76 359.94 309.75 369.78 349.07 292.53 398.48 390.05 TRUE FALSE FALSE 407.6949875 442.3200624 359.1825163 374.619909 286.9003596 362.7270626 362.5337468 325.8304328 382.0544857 387.7299653 1.05149208 1.140794115 0.926372859 0.966187663 0.739948896 0.93551465 0.935016066 0.840354014 0.985362288 1 8.598908426 -6.351111675 2.343761864 1.032850794 0.876617525 0.514450647 0.072350468 0.181631195 1.950120599 0.010980473 0.018092714 4.46E-07 6.351111675 -0.15623327 ETQS(ph)PEQVKSEK ddPTM_HeLa_CUDC101_4h_R1 2 ETQSPEQVKSEK 12 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 ET(0.004)QS(0.996)PEQVKSEK;ETQS(0.907)PEQVKS(0.093)EK ; 159.41 1.84E-08 14898000 3008.3 3188.7 3281.7 3330.7 4474.8 3946.5 3487.8 4184.9 3806.5 3069.4 TRUE FALSE FALSE 2655.671634 3286.940067 3459.118629 3466.540343 4144.702919 3871.227088 3622.325614 4661.2921 3649.594459 3051.143072 0.87038581 1.077281527 1.133712365 1.136144802 1.358409888 1.268779273 1.187202805 1.527719936 1.19614006 1 11.57513412 -6.349074863 0.99375764 0.93991255 1.331244288 0.486755324 0.124831536 0.189470017 0.37146435 0.017897306 0.03600051 4.48E-07 6.349074863 0.391331739 (ac)AAGGDHGS(ph)PDSYRSPLASR ddPTM_HeLa_CUDC101_4h_R1 1 AAGGDHGSPDSYRSPLASR 19 1 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;B4DEP1;A0A1W2PRX2;A0A096LP72;A0A096LNY4;A0A096LNY5;A0A1B0GTG9;A0A1B0GWF8;P30566-2 A0A1B0GWJ0 ADSL Adenylosuccinate lyase 1 0 AAGGDHGS(0.9)PDS(0.064)Y(0.018)RS(0.018)PLASR 55.261 0.00023294 16248000 444.48 551.66 518.11 735.92 873.37 972.36 858.46 596.91 895.73 488.1 TRUE FALSE FALSE 392.3787282 568.6559907 546.1205938 765.9339985 808.9432351 953.8138531 891.5710898 664.8598216 858.8076303 485.1967595 0.808700224 1.172011106 1.125565213 1.578604934 1.667247811 1.965828985 1.837545434 1.370289081 1.770019303 1 8.922426105 -6.348802396 1.426097382 0.917027816 1.747184321 0.282451133 0.314780361 0.113023526 0.452402449 0.027858626 0.050133284 4.48E-07 6.348802396 0.830156505 LASPSGS(ph)TSSGLEVVAPEGTSAPGGGPGTLDDSATICR ddPTM_HeLa_CUDC101_4h_R1 1 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 0 Q13263-2;Q13263;M0R0K9 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 1 0 LAS(0.125)PS(0.151)GS(0.568)T(0.052)S(0.052)S(0.052)GLEVVAPEGTSAPGGGPGTLDDSATICR 108.3 1.21E-20 25791000 623.58 652.08 569.5 284.02 558.52 432.66 416.54 352.11 964.72 655.78 TRUE FALSE FALSE 550.4848977 672.1698119 600.2888926 295.6035632 517.3190923 424.4077314 432.6060873 392.1927791 924.9538333 651.8793914 0.8444582 1.031126035 0.920858828 0.453463581 0.793580989 0.651052537 0.663629029 0.601633959 1.418903321 1 9.348461256 -6.348654069 9.06494624 0.934157935 0.64454395 0.531866948 0.178281989 0.16371569 15.95877656 0.014552544 0.022240979 4.48E-07 6.348654069 -0.289613985 IEDVGS(ph)DEEDDSGKDK ddPTM_HeLa_CUDC101_4h_R1 13 IEDVGSDEEDDSGKDK 16 1 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 0 IEDVGS(1)DEEDDSGKDK;IEDVGS(0.999)DEEDDS(0.001)GKDK;IEDVGS(0.997)DEEDDS(0.003)GKDK;IEDVGS(0.992)DEEDDS(0.008)GKDK;IEDVGS(0.998)DEEDDS(0.002)GKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(0.97)DEEDDS(0.03)GKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(0.998)DEEDDS(0.002)GKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK ;;;;;;;;;;;; 233.4 1.73E-42 24933300900 43093.5 41538.9 32232.1 34593.5 29941.3 32879.6 31182.02 28239.45 38873.8 40834.6 TRUE FALSE FALSE 38042.14526 42818.66427 33974.66482 36004.37246 27732.58995 32252.47641 32384.72096 31454.11484 37271.40551 40591.71398 0.937189922 1.054862189 0.836985224 0.886988228 0.683208153 0.794558131 0.797816051 0.774890039 0.918202309 1 15.30889764 -6.348449706 1.751750526 0.97503827 0.772439964 0.694500951 0.059041806 0.130983041 0.787070529 0.008807074 0.015182645 4.48E-07 6.348449706 -0.202598306 ESEDKPEIEDVGS(ph)DEEEEKKDGDK ddPTM_HeLa_CUDC101_4h_R1 3 ESEDKPEIEDVGSDEEEEKKDGDK 24 3 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK;ESEDKPEIEDVGS(1)DEEEEKKDGDK ;; 68.189 0.00062906 5265285000 8387.2 7893.6 6725.56 7463.9 5518.2 6227.5 5443 5703.4 7372.3 9094.9 TRUE FALSE FALSE 7404.06513 8136.79246 7089.164117 7768.310104 5111.13338 6108.720813 5652.938333 6352.652002 7068.410674 9040.80313 0.818960995 0.900007703 0.784129907 0.859250002 0.565340635 0.675683424 0.625269487 0.702664565 0.781834376 1 13.14223522 -6.347736346 0.161216515 1.103463116 0.431410319 0.407280989 0.096388927 2.775345096 0.218496434 0.286620796 0.562435349 4.49E-07 6.347736346 -0.672052797 QPS(ph)PGPTPPPFPGNR ddPTM_HeLa_CUDC101_4h_R1 2 QPSPGPTPPPFPGNR 15 0 O43516-2;O43516;O43516-3;E9PB87 O43516-2 WIPF1 WAS/WASL-interacting protein family member 1 1 0 QPS(0.995)PGPT(0.005)PPPFPGNR;QPS(0.998)PGPT(0.002)PPPFPGNR ; 172.09 6.15E-07 37700000 803.13 805.61 874.65 1080.18 1047.64 998.19 1016.08 1105.98 1129.69 1113.19 TRUE FALSE FALSE 708.9883189 830.4298892 921.9362247 1124.234409 970.3576844 979.1511888 1055.270546 1231.880293 1083.1237 1106.568696 0.640708816 0.75045489 0.833148658 1.015964407 0.876906863 0.884853504 0.953642146 1.113243395 0.978812887 1 10.1118773 -6.344497579 6.750453191 0.818535857 0.958073884 0.221411721 0.115927295 0.351823621 24.28199009 0.023089175 0.035379941 4.52E-07 6.344497579 0.139538027 LLAAVEAFYS(ph)PPSHDRPR ddPTM_HeLa_CUDC101_4h_R1 2 LLAAVEAFYSPPSHDRPR 18 1 J3QK89;Q8IWX8 J3QK89 CHERP Calcium homeostasis endoplasmic reticulum protein 1 0 LLAAVEAFY(0.013)S(0.869)PPS(0.117)HDRPR;LLAAVEAFY(0.118)S(0.847)PPS(0.034)HDRPR ; 75.334 0.0064373 10946100 11614.9 10957.7 9233.6 9667.5 10133.5 9567.1 8659.4 9040.4 10112.6 11060.6 TRUE FALSE FALSE 10253.41903 11295.29375 9732.796346 10061.78244 9385.971894 9384.623507 8993.395959 10069.52259 9695.754348 10994.81106 0.932568916 1.0273295 0.885217244 0.915139185 0.853672868 0.85355023 0.817967304 0.915843168 0.881848201 1 13.42453519 -6.342950261 1.435843762 0.971530637 0.857997302 0.408565404 0.047807154 0.198508107 0.805018197 0.006708599 0.01208699 4.54E-07 6.342950261 -0.113533336 VSGAGFSPS(ph)SK ddPTM_HeLa_CUDC101_4h_R1 1 VSGAGFSPSSK 11 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 VSGAGFS(0.326)PS(0.646)S(0.028)K 86.114 0.030353 101690000 2088.2 1950.4 1752 1665.8 1989.9 1673.6 1373 2140.7 1669.2 1837 TRUE FALSE FALSE 1843.424362 2010.489512 1846.71842 1733.738524 1843.109041 1641.678868 1425.95707 2384.388635 1600.394869 1826.073442 1.009501764 1.1009905 1.011305666 0.949435266 1.009329088 0.899021272 0.780887032 1.305746297 0.8764132 1 10.83452907 -6.342565171 8.847204204 1.013887821 0.973501903 0 0.134758882 1.425027028 145.9415526 0.018029046 0.027558693 4.54E-07 6.342565171 -0.040385918 MAADDVEEYMIERPEPEFQDLNEK ddPTM_HeLa_CUDC101_4h_R1 1 MAADDVEEYMIERPEPEFQDLNEK 24 1 C9JSA3;C9JND6;C9J6F3;C9J5C3;Q9BUL8;H7C5M9;C9J363 C9JSA3 PDCD10 Programmed cell death protein 10 0 0 105.06 2.98E-06 9554800 674.69 753.28 432.34 557.3 412.83 717.26 591.41 469.9 757.8 580.49 FALSE FALSE TRUE 595.603861 776.4876639 455.7136082 580.0291029 382.3763534 703.5794605 614.2208818 523.3915166 726.5631633 577.0372197 1.032175812 1.345645718 0.789747338 1.005184905 0.662654575 1.219296497 1.064438932 0.907032508 1.259127035 1 9.172520567 (ac)MDSAGQDINLNS(ph)PNK ddPTM_HeLa_CUDC101_4h_R1 6 MDSAGQDINLNSPNK 15 0 O43399-2;O43399-4;O43399;O43399-3;O43399-5;O43399-7;A0A087WYR3;A0A087WZ51 O43399-2 TPD52L2 Tumor protein D54 1 0 MDSAGQDINLNS(1)PNK;MDSAGQDINLNS(1)PNK;MDSAGQDINLNS(1)PNK;MDSAGQDINLNS(1)PNK;MDSAGQDINLNS(1)PNK;MDSAGQDINLNS(1)PNK ;;;;; 151.22 2.66E-32 115183700 31559.1 26418.5 22636.9 21839.5 23606.1 24140.3 19828.8 16788.78 30688.6 31772.9 TRUE FALSE FALSE 27859.79014 27232.42267 23860.71929 22730.20921 21864.72503 23679.864 20593.60346 18699.94685 29423.60292 31583.91338 0.882087973 0.86222446 0.755470641 0.719676784 0.692274094 0.749744457 0.65202824 0.592071876 0.931600925 1 14.94690232 -6.342295698 0.264440918 1.030421621 0.525392622 0.907763074 0.037562958 0.482601774 0.075252927 0.033864852 0.085578712 4.55E-07 6.342295698 -0.505028999 MACEDKFTK(ac)MGAHGK ddPTM_HeLa_CUDC101_4h_R1 1 MACEDKFTKMGAHGK 15 2 H7C3Q1 H7C3Q1 AOX1 0 1 MACEDK(0.001)FTK(0.999)MGAHGK 43.813 0.036493 2005500 1665.5 1304.1 1520.3 1489.7 1672.2 1421.4 1504.2 1250.7 1603.6 1431.5 FALSE TRUE FALSE 1470.272615 1344.277775 1602.492017 1550.456405 1548.845137 1394.289163 1562.217498 1393.074632 1537.498929 1422.985374 1.033231009 0.944688399 1.126147918 1.089580001 1.088447686 0.979833798 1.097845084 0.978980289 1.080474162 1 10.47470512 -6.760885758 24.99998367 1.010805588 1.060827759 0.139501871 0.055073092 18.56792303 838430.4863 0.007714264 0.010529977 1.73E-07 6.760885758 0.050022171 MADFHKEEMDDQDKDK ddPTM_HeLa_CUDC101_4h_R1 1 MADFHKEEMDDQDKDK 16 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 0 51.009 0.028624 14477000 2030.3 1439.4 1567.6 1770.8 1367.5 1634.8 1616.7 1419.8 1538 1840.8 FALSE FALSE TRUE 1792.311312 1483.746208 1652.349198 1843.020878 1266.622249 1603.618914 1679.056661 1581.424293 1474.602989 1829.85084 0.979484925 0.810856369 0.902996661 1.007197329 0.692199726 0.87636592 0.917592092 0.864236723 0.805859667 1 10.83751034 -7.358277108 6.661533216 0.990872952 0.869793874 0 0.095776717 0.195747364 11.52921126 0.012586008 0.014349907 4.38E-08 7.358277108 -0.121079077 MADK(ac)DGDLIATK ddPTM_HeLa_CUDC101_4h_R1 3 MADKDGDLIATK 12 1 O43852;O43852-3;O43852-15;O43852-2;O43852-4;O43852-10;O43852-6;O43852-8 O43852 CALU Calumenin 0 1 ;; MADK(1)DGDLIATK;MADK(1)DGDLIATK;MADK(1)DGDLIATK 220.29 2.74E-22 4086000 4474.03 1786.13 1871.9 1531.51 3970.29 3753.09 4554.92 3770.23 4489.32 3569.5 FALSE TRUE FALSE 3949.590986 1841.158548 1973.100576 1593.971598 3677.409617 3681.506061 4730.60479 4199.417743 4304.268329 3548.268455 1.113103767 0.518889304 0.556074209 0.449225197 1.036395544 1.037550035 1.333215017 1.183511844 1.213061634 1 11.79289945 ELVSSSSSGSDS(ph)DSEVDKK ddPTM_HeLa_CUDC101_4h_R1 1 ELVSSSSSGSDSDSEVDKK 19 1 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 ELVSSSS(0.001)S(0.003)GS(0.029)DS(0.751)DS(0.215)EVDKK 87.793 0.00221 280990000 1919.6 1253.3 1479.5 1355.8 1284.3 1003.8 1336.8 1097.5 1297.6 1578.8 TRUE FALSE FALSE 1694.587398 1291.912687 1559.486245 1411.095384 1189.559748 984.6541874 1388.360824 1222.434964 1244.112379 1569.409227 1.079761332 0.823184078 0.99367725 0.899125199 0.757966582 0.627404357 0.884639137 0.778914092 0.79272656 1 10.61600587 -6.342214269 0.982637057 1.032384356 0.76093104 0.192305981 0.115348014 0.251994745 0.482958739 0.016363055 0.033205997 4.55E-07 6.342214269 -0.271453316 GHYEVTGS(ph)DDETGK ddPTM_HeLa_CUDC101_4h_R1 7 GHYEVTGSDDETGK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GHYEVTGS(1)DDETGK;GHYEVT(0.013)GS(0.987)DDETGK;GHYEVTGS(1)DDETGK;GHYEVTGS(1)DDETGK;GHYEVT(0.002)GS(0.998)DDETGK;GHYEVTGS(1)DDETGK;GHYEVT(0.24)GS(0.76)DDETGK ;;;;;; 260.73 4.71E-70 1050883000 52296.3 40406.3 38558.2 36327.4 31671.2 35980.6 33582.1 27362.3 39310.7 44015.6 TRUE FALSE FALSE 46166.20699 41651.17021 40642.77292 37808.98839 29334.87867 35294.33 34877.37285 30477.11363 37690.29631 43753.79325 1.055136105 0.951944211 0.928897129 0.864130526 0.670453382 0.806657603 0.79712798 0.696559346 0.8614178 1 15.41712048 -6.340300821 1.361144616 1.024136333 0.750039955 0.645254656 0.070531382 0.104105978 0.37997772 0.00824162 0.015068328 4.57E-07 6.340300821 -0.274096378 MAEGSGARVFMMDPLGDTLR ddPTM_HeLa_CUDC101_4h_R1 1 MAEGSGARVFMMDPLGDTLR 20 1 A0A087X192 A0A087X192 ALDH3B1 0 0 52.555 0.0029774 0 291.19 184.21 221.1 211.69 169.76 250.86 223.77 119.77 152.5 259.01 FALSE FALSE TRUE 257.0571496 189.8852918 233.0533348 220.3236332 157.237143 246.0752635 232.4008839 133.4041327 146.2138855 257.469397 0.998398849 0.737506259 0.905169071 0.85572746 0.610702261 0.955745678 0.902634979 0.51813588 0.567888406 1 8.008257152 -7.272409454 23.61467483 0.999243915 0.795647856 0 0.187975822 262.258048 564547.2565 0.020671847 0.023771382 5.34E-08 7.272409454 -0.203596059 MAFK(ac)EPKPMSK ddPTM_HeLa_CUDC101_4h_R1 2 MAFKEPKPMSK 11 2 P42568-2;P42568 P42568-2 MLLT3 Protein AF-9 0 1 ; MAFK(0.872)EPK(0.128)PMSK;MAFK(0.996)EPK(0.004)PMSK 62.408 0.032974 4119100 1697.28 1553.55 1710.3 1854.02 1937.24 2001.13 1679.96 2693.9 1825.55 1178.56 FALSE TRUE FALSE 1498.327411 1601.413034 1802.763991 1929.634949 1794.333665 1962.961779 1744.75662 3000.562687 1750.300056 1171.549873 1.278927552 1.366918363 1.53878553 1.647078792 1.531589654 1.675525579 1.489272169 2.561190741 1.494003881 1 10.19420266 -1 0.183136026 0.959629759 6.113393053 0.559861426 0.253824068 20.14066732 0.220779013 0.243158961 29.21112616 0.1 1 5.153763294 S(ph)VRS(ph)NFS(ph)LLT(ph)NVPVPS(ph)NK ddPTM_HeLa_CUDC101_4h_R1 1 SVRSNFSLLTNVPVPSNK 18 1 P27815-6;P27815-2;P27815-7;P27815 P27815-6 PDE4A "cAMP-specific 3,5-cyclic phosphodiesterase 4A" 5 0 S(1)VRS(1)NFS(1)LLT(1)NVPVPS(1)NK 61.265 0.014005 6619600 4570.6 1718.4 2134.6 1402.2 819.53 1032.4 762.3 1336.2 1217.9 1480.7 TRUE FALSE FALSE 4034.841197 1771.341867 2250.002933 1459.387777 759.0749046 1012.70869 791.7021664 1488.307607 1167.697647 1471.892731 2.74126036 1.203444946 1.528645999 0.991504168 0.515713468 0.688031586 0.537880343 1.011152223 0.79333067 1 10.52345682 -6.339300529 1.648652466 1.80199559 0.676483972 0.21308196 0.549631438 0.305851984 1.628775689 0.110401931 0.193306864 4.58E-07 6.339300529 -1.125511617 LELQGPRGS(ph)PNAR ddPTM_HeLa_CUDC101_4h_R1 1 LELQGPRGSPNAR 13 1 P19338;H7BY16 P19338 NCL Nucleolin 1 0 LELQGPRGS(1)PNAR 65.234 0.036184 45994000 2043.6 2511.8 2068.8 2675.3 3559.2 2862.7 2723.9 3507.8 2301.9 1653.8 TRUE FALSE FALSE 1804.052306 2589.185581 2180.645586 2784.410298 3296.644907 2808.098767 2828.961735 3907.113773 2207.014708 1643.963124 1.097380032 1.574965729 1.326456509 1.693718221 2.005303439 1.708127589 1.720818243 2.376643196 1.34249648 1 10.68296222 -6.339107803 0.494505873 0.986152275 2.102348798 0.686554057 0.220739957 0.316149655 0.150588244 0.055096933 0.148966841 4.58E-07 6.339107803 1.116196522 MALIGLGVSHPVLK ddPTM_HeLa_CUDC101_4h_R1 2 MALIGLGVSHPVLK 14 0 H3BSJ9;H3BRG4;P22695 H3BSJ9 UQCRC2 "Cytochrome b-c1 complex subunit 2, mitochondrial" 0 0 ; ; 103.44 0.018093 0 2135.21 1717.19 953.79 1855.6 1737.41 1706.04 1519.03 1036.17 1051.75 1056.91 FALSE FALSE TRUE 1884.923921 1770.094589 1005.354772 1931.279389 1609.244726 1673.500129 1577.619496 1154.123404 1008.39642 1050.623452 1.794100366 1.684803994 0.956912555 1.838222233 1.531704553 1.592863862 1.50160316 1.09851289 0.959807643 1 10.03702998 -9.519501135 1.282229153 1.000835811 1.537242037 0.366879602 0.267965345 0.397041529 1.171591861 0.184424871 0.044608291 3.02E-10 9.519501135 0.536406226 MALIQMGSVEEAVQALIDLHNHDLGENHHLR ddPTM_HeLa_CUDC101_4h_R1 1 MALIQMGSVEEAVQALIDLHNHDLGENHHLR 31 0 A0A0U1RRM4;A0A0D9SF20;A6NLN1 A0A0U1RRM4;A6NLN1 PTBP1 0 0 132.39 4.95E-16 7722700 2168.5 1850.9 2332.1 1702.9 2474.2 1988.2 1735.3 963.69 2302.4 2669 FALSE FALSE TRUE 1914.311717 1907.924035 2458.18038 1772.351623 2291.683195 1950.278398 1802.231102 1073.392574 2207.494097 2653.124669 0.721531008 0.719123401 0.926522756 0.668024252 0.863767625 0.735087356 0.679286248 0.404576757 0.83203557 1 11.37347675 -13.52287875 0.043983669 2.266937102 1.06E-12 0.417749024 0.119706458 350.5454923 1.227298224 58.01935878 16.88927423 3.00E-14 13.52287875 -2.266937102 SEPSGEINIDS(ph)SGETVGSGER ddPTM_HeLa_CUDC101_4h_R1 1 SEPSGEINIDSSGETVGSGER 21 0 P42695;E9PKK4;G3V1A9 P42695 NCAPD3 Condensin-2 complex subunit D3 1 0 SEPS(0.001)GEINIDS(0.499)S(0.499)GET(0.001)VGSGER 92.671 0.00050734 5311500 1748.7 1225.3 1418.3 1142.4 1411.6 1250.4 1273.1 944.17 1435.9 1424.4 TRUE FALSE FALSE 1543.720037 1263.050041 1494.977588 1188.99201 1307.46908 1226.550703 1322.203893 1051.650496 1376.711594 1415.927605 1.090253507 0.892030098 1.055829113 0.839726555 0.92340108 0.866252412 0.933807554 0.742729001 0.972303661 1 10.46753179 -6.336899744 0.957638937 1.039470019 0.855228689 0.414185761 0.075366259 0.302868044 0.551221555 0.013116259 0.02698535 4.60E-07 6.336899744 -0.18424133 S(ph)PPSTGSTYGSSQKEESAASGGAAYTK ddPTM_HeLa_CUDC101_4h_R1 3 SPPSTGSTYGSSQKEESAASGGAAYTK 27 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.326)PPS(0.326)T(0.326)GS(0.016)T(0.004)Y(0.001)GSSQKEESAASGGAAYTK;S(0.727)PPS(0.117)T(0.105)GS(0.011)T(0.01)Y(0.009)GS(0.01)S(0.01)QKEES(0.001)AASGGAAYTK;S(0.902)PPS(0.017)T(0.065)GS(0.012)T(0.003)Y(0.001)GS(0.001)SQKEESAASGGAAYTK ;; 90.778 3.06E-06 130027000 4931.18 3959.2 3596.5 3128.27 3296.18 3558.11 2806.23 2812.69 4080.83 3750.71 TRUE FALSE FALSE 4353.154556 4081.178259 3790.937669 3255.854372 3053.027368 3490.24498 2914.467231 3132.87526 3912.61646 3728.40061 1.167566206 1.09461903 1.01677316 0.873257655 0.818857115 0.936123916 0.78169369 0.84027324 1.049408813 1 11.86434117 -6.336008655 2.623514951 1.082137519 0.84552389 0.807007661 0.053465987 0.11632871 1.567634734 0.011268013 0.018424574 4.61E-07 6.336008655 -0.236613629 ARPAPSRDPS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 ARPAPSRDPSPPR 13 2 Q5C9Z4 Q5C9Z4 NOM1 Nucleolar MIF4G domain-containing protein 1 1 0 ARPAPSRDPS(1)PPR 96.059 0.010248 11549000 323.86 241.78 272.9 139.41 227.91 261.07 153.57 280.06 284.77 287.55 TRUE FALSE FALSE 285.8976217 249.2289552 287.6537995 145.0957424 211.0975334 256.0905247 159.4932463 311.9408984 273.0316601 285.8396398 1.000202848 0.871918798 1.006346774 0.507612389 0.73851735 0.89592376 0.557981554 1.091314342 0.95519173 1 8.159062191 -6.335229224 24.99987727 0.988872157 0.753690058 0.299031836 0.15769497 105.1226369 35614.94643 0.021886768 0.033432593 4.62E-07 6.335229224 -0.235182099 RS(ph)RSESETSTMAAK ddPTM_HeLa_CUDC101_4h_R1 1 RSRSESETSTMAAK 14 2 A0A087WVF1;Q96B23-2;Q96B23 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 RS(0.639)RS(0.354)ES(0.003)ET(0.003)S(0.001)TMAAK 95.751 0.0083448 6560800 793.59 731.28 744.57 845.47 1403 1019.1 946.62 1099 770.59 594.63 TRUE FALSE FALSE 700.5665832 753.80987 784.8237064 879.951921 1299.503485 999.6623654 983.1314505 1224.105718 738.825954 591.0931143 1.185205116 1.275281088 1.327749702 1.488685792 2.198475086 1.691209627 1.663242942 2.070918588 1.249931586 1 9.207241604 -6.333956413 1.151261227 1.086641478 1.880643114 0.749346452 0.185084669 0.149773315 0.392923232 0.031178579 0.060077768 4.63E-07 6.333956413 0.794001636 VIGSGCNLDS(ph)AR ddPTM_HeLa_CUDC101_4h_R1 2 VIGSGCNLDSAR 12 0 P00338-3;P00338;P00338-4;P00338-2;P00338-5;Q6ZMR3;F5H155;P07864;F5H5G7;A0A087WUM2;G3XAP5;F5H245;A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50 P00338-3;A0A5F9ZHM4 LDHA;LDHAL6A;LDHC;LDHB L-lactate dehydrogenase A chain;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase;L-lactate dehydrogenase C chain;L-lactate dehydrogenase B chain 1 0 VIGSGCNLDS(1)AR;VIGSGCNLDS(1)AR ; 107.74 0.0032756 27582000 2805.1 3221.1 2835.2 3101.8 4915.8 5149.4 4674 2355.4 3818.4 2393.6 TRUE FALSE FALSE 2476.29043 3320.338273 2988.479488 3228.304811 4553.171228 5051.183774 4854.277746 2623.529215 3661.003936 2379.362761 1.040736819 1.395473749 1.255999941 1.356793871 1.913609519 2.122914529 2.040158746 1.102618423 1.538648917 1 11.21635953 -6.33303469 1.054007583 1.025688264 1.827154747 0.301041391 0.3298625 0.251538976 0.554095599 0.050161242 0.099716843 4.64E-07 6.33303469 0.801466483 MAMDEYLWMVILGFIIAFILAFSVGAND ddPTM_HeLa_CUDC101_4h_R1 1 MAMDEYLWMVILGFIIAFILAFSVGAND 28 0 E5RJW9 E5RJW9 SLC20A2 0 0 31.6 0.038947 168160000 1720.3 1424.7 1715.6 1766.3 1366.6 1270.6 1591.8 1485.7 1608 1408.3 FALSE FALSE TRUE 1518.649042 1468.593318 1808.350525 1838.337349 1265.788641 1246.365422 1653.196259 1654.826083 1541.717559 1399.923369 1.084808694 1.049052649 1.291749653 1.313169984 0.904184235 0.890309748 1.18091911 1.182083333 1.101287109 1 10.45113214 -8.440653888 0.861932816 1.00949591 1.111714437 0.016642362 0.136917346 1.107420906 1.710326 0.05558668 0.030764219 3.63E-09 8.440653888 0.102218527 ELSNS(ph)PLRENSFGS(ph)PLEFR ddPTM_HeLa_CUDC101_4h_R1 2 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 ELS(0.059)NS(0.94)PLRENS(0.459)FGS(0.541)PLEFR;ELS(0.068)NS(0.65)PLRENS(0.544)FGS(0.738)PLEFR ; 73.435 0.012616 197807000 9626.5 8326.4 7881.5 7929.2 8501 7227.2 6952.8 7272.2 10898.5 9168.4 TRUE FALSE FALSE 8498.096263 8582.926515 8307.59773 8252.587049 7873.898166 7089.353201 7220.971825 8100.037853 10449.25922 9113.865949 0.932435951 0.941743774 0.911533895 0.905497963 0.863947112 0.777864546 0.792306126 0.888759819 1.146523251 1 13.15384744 -6.332604812 0.40703296 0.988730261 0.795606521 0.616665423 0.06163265 0.518226175 0.168797388 0.01432662 0.040154966 4.65E-07 6.332604812 -0.19312374 GLLYDS(ph)DEEDEERPARK ddPTM_HeLa_CUDC101_4h_R1 3 GLLYDSDEEDEERPARK 17 2 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 0 GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK ;; 214.58 3.12E-23 435797000 9300.5 7638.2 7966.6 7953.3 9945 8497.9 8062 8297.5 8922 7857 TRUE FALSE FALSE 8210.309489 7873.523889 8397.298494 8277.669951 9211.377163 8335.816716 8372.954041 9242.05386 8554.231384 7810.266215 1.051220184 1.008099298 1.075161622 1.059844789 1.179393494 1.067289704 1.072044641 1.183321235 1.095254777 1 12.93115601 -6.33189232 1.516950226 1.023361135 1.116559785 0.350933122 0.046861035 0.237697597 1.073462848 0.006781138 0.012125872 4.66E-07 6.33189232 0.09319865 STAQQELDGKPASPT(ph)PVIVASHTANK ddPTM_HeLa_CUDC101_4h_R1 1 STAQQELDGKPASPTPVIVASHTANK 26 1 H0YAC7;P35606-2;P35606 H0YAC7 COPB2 Coatomer subunit beta 1 0 STAQQELDGKPAS(0.079)PT(0.921)PVIVASHTANK 86.918 1.13E-05 223470000 3382.1 2167.1 2682.9 2212.1 2083.1 1984.1 2116.6 1711.5 2713.7 2817.3 TRUE FALSE FALSE 2985.655365 2233.865782 2827.945689 2302.319 1929.433863 1946.256598 2198.237971 1906.330242 2601.840137 2800.542574 1.066098903 0.797654641 1.009784931 0.822097482 0.68895002 0.694956976 0.784932888 0.680700325 0.929048593 1 11.45149065 -6.330944239 0.952294563 1.027093465 0.706070594 0.648696996 0.081117121 0.184814771 0.332540411 0.013869342 0.028714847 4.67E-07 6.330944239 -0.321022871 NS(ph)DADFQNNEK ddPTM_HeLa_CUDC101_4h_R1 2 NSDADFQNNEK 11 0 E5RIM1;A0A087WTZ8;E5RFJ1;E5RHW9;Q96MF7 E5RIM1 NSMCE2 E3 SUMO-protein ligase NSE2 1 0 NS(1)DADFQNNEK;NS(1)DADFQNNEK ; 141.06 0.0013564 19292300 4425.5 6718.6 5328.5 4901.2 9421.7 10881.5 7600.4 3998.1 3858.2 4873.9 TRUE FALSE FALSE 3906.749599 6925.592102 5616.574828 5101.092121 8726.679962 10673.95352 7893.549974 4453.227543 3699.163363 4844.909826 0.806361674 1.429457379 1.159273347 1.052876587 1.801205858 2.203127385 1.629246004 0.919155919 0.76351542 1 12.2422541 -6.328888173 1.082145611 0.926865108 1.644068272 0.375590167 0.356365286 0.355010973 0.823855503 0.064277571 0.126891178 4.69E-07 6.328888173 0.717203164 FKRPQFS(ph)PTGDCQAEAAAAANGTGGEEDDGPAAELLEK ddPTM_HeLa_CUDC101_4h_R1 1 FKRPQFSPTGDCQAEAAAAANGTGGEEDDGPAAELLEK 38 2 Q7Z4Q2 Q7Z4Q2 HEATR3 HEAT repeat-containing protein 3 1 0 FKRPQFS(0.795)PT(0.193)GDCQAEAAAAANGT(0.012)GGEEDDGPAAELLEK 40.671 0.018768 12098000 556.2 384.09 404.58 529.13 610.45 586.48 446.54 436.96 702.45 337.52 TRUE FALSE FALSE 491.0030791 395.9233576 426.4528186 550.7102085 565.4183197 575.2938711 463.7631974 486.7017601 673.4947137 335.512416 1.463442352 1.180055756 1.271049291 1.641400384 1.685238139 1.714672375 1.382253458 1.450622203 2.007361521 1 8.390222346 -6.328151431 5.316944804 1.222805205 1.577815658 0 0.285451131 0.159402933 8.855200834 0.030572142 0.047264794 4.70E-07 6.328151431 0.355010453 EYIPGQPPLSQSSDS(ph)SPTR ddPTM_HeLa_CUDC101_4h_R1 3 EYIPGQPPLSQSSDSSPTR 19 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 0 EYIPGQPPLSQS(0.001)S(0.001)DS(0.581)S(0.338)PT(0.08)R;EYIPGQPPLS(0.005)QS(0.005)S(0.005)DS(0.422)S(0.422)PT(0.139)R;EYIPGQPPLSQSS(0.03)DS(0.817)S(0.14)PT(0.013)R ;; 216.9 5.34E-25 1978400000 4636 3974.01 3787.14 3422.26 3752.76 3509.49 3866.93 2743.9 4007.5 4168.2 TRUE FALSE FALSE 4092.575108 4096.444538 3991.884244 3561.834555 3475.926371 3442.552325 4016.078785 3056.254485 3842.309154 4143.407361 0.987731775 0.988665651 0.963430311 0.859638999 0.838905294 0.83085056 0.969269598 0.737618636 0.927330774 1 12.01660195 -6.327710411 2.88207002 0.993352277 0.850957168 0.548116151 0.056469948 0.12094153 1.976364997 0.007398102 0.01201099 4.70E-07 6.327710411 -0.142395109 SPMFPALGEAS(ph)SDDDLFQSAKPK ddPTM_HeLa_CUDC101_4h_R1 1 SPMFPALGEASSDDDLFQSAKPK 23 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0 Q641Q2;A0A0A0MR88 FAM21A;FAM21C;FAM21D WASH complex subunit FAM21A;WASH complex subunit FAM21C;Putative WASH complex subunit FAM21 1 0 SPMFPALGEAS(0.558)S(0.441)DDDLFQS(0.001)AKPK 103.41 2.34E-05 45449000 1361.4 990.65 752.69 879.86 1123.7 744.27 744.41 630.57 1055 1128.3 TRUE FALSE FALSE 1201.818756 1021.170752 793.3826982 915.7444939 1040.80689 730.0742898 773.1221431 702.3515399 1011.512453 1121.588821 1.071532395 0.910468019 0.707373935 0.816470775 0.927975449 0.650928643 0.689309779 0.626211252 0.901856754 1 10.13132816 -6.326756094 0.616194974 1.040174968 0.660140047 0.564828135 0.097195414 0.338841793 0.251230298 0.022663982 0.05728341 4.71E-07 6.326756094 -0.380034921 AAES(ph)AEIEPR ddPTM_HeLa_CUDC101_4h_R1 1 AAESAEIEPR 10 0 Q9NS91 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 AAES(1)AEIEPR 98.182 0.018226 11455000 1222.5 1205.6 1040.3 770.26 837.37 1028.1 920.68 769.91 1013.9 1137.9 TRUE FALSE FALSE 1079.200403 1242.743107 1096.541765 801.6745321 775.5988834 1008.490705 956.190936 857.5534423 972.1066129 1131.13172 0.954089063 1.098672316 0.969420046 0.708736673 0.685683965 0.891576717 0.845340042 0.75813756 0.85941062 1 10.14355123 -6.325882491 7.238074088 0.988493284 0.783036023 0.612922821 0.078529345 0.119547826 11.7909573 0.010769941 0.016505704 4.72E-07 6.325882491 -0.205457262 S(ph)SPLKITLFLEEDK ddPTM_HeLa_CUDC101_4h_R1 2 SSPLKITLFLEEDK 14 1 Q9NQW6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 S(0.5)S(0.5)PLKITLFLEEDK;S(0.5)S(0.5)PLKITLFLEEDK ; 82.774 0.012548 27482000 2968.85 3025.5 2978.3 3157.2 4196 4144.5 3392.7 3115 3367.2 2963.14 TRUE FALSE FALSE 2620.845903 3118.712069 3139.315907 3285.964263 3886.46944 4065.450568 3523.557575 3469.599009 3228.402591 2945.515111 0.889775066 1.058800227 1.065795213 1.115582212 1.319453234 1.380217182 1.196244949 1.17792606 1.096040071 1 11.52430424 -6.324893607 1.352968429 0.951912045 1.267991774 0.630532541 0.083861273 0.147442632 0.531403166 0.013370337 0.024675243 4.73E-07 6.324893607 0.316079729 MATEVAADALGEEWK ddPTM_HeLa_CUDC101_4h_R1 1 MATEVAADALGEEWK 15 0 P62753;A2A3R7;A2A3R5 P62753 RPS6 40S ribosomal protein S6 0 0 204.86 1.72E-16 4629800 1014.7 995.68 835.73 972.17 1175.2 1047.9 1122.1 847.62 1153.1 1161.6 FALSE FALSE TRUE 895.7584042 1026.355721 880.9120917 1011.819295 1088.507837 1027.913053 1165.379773 944.1096346 1105.56873 1154.690752 0.775756109 0.888857661 0.762898716 0.87626864 0.942683429 0.890206362 1.009257042 0.817629857 0.957458721 1 10.17329081 -3.96377589 14.84678594 0.891321661 0.563419146 0.079492291 0.079255054 773552.9808 9567871.907 0.013279967 6519775.434 0.000108699 3.96377589 -0.327902516 KVEEDLKADEPSS(ph)EESDLEIDK ddPTM_HeLa_CUDC101_4h_R1 1 KVEEDLKADEPSSEESDLEIDK 22 2 P50502;Q3KNR6;F6VDH7 P50502 ST13 Hsc70-interacting protein 1 0 KVEEDLKADEPS(0.053)S(0.898)EES(0.049)DLEIDK 75.319 0.00090367 18782000 3991.5 3465.9 2573.1 3067.5 2277.8 2684.1 2511.7 1717.7 4047.8 3996.7 TRUE FALSE FALSE 3523.622421 3572.680271 2712.209569 3192.605909 2109.771232 2632.905265 2608.57711 1913.236025 3880.947971 3972.927451 0.886908323 0.899256358 0.682672816 0.803590287 0.531036939 0.66271164 0.656588156 0.481568327 0.976848437 1 11.95598673 -6.324750782 0.41104299 0.992254252 0.506849883 0.822819881 0.072672261 0.381587458 0.126184473 0.02640921 0.074565049 4.73E-07 6.324750782 -0.485404368 MCDLVSDFDGFSER ddPTM_HeLa_CUDC101_4h_R1 7 MCDLVSDFDGFSER 14 0 P30520 P30520 ADSS Adenylosuccinate synthetase isozyme 2 0 0 ;;;;;; ;;;;;; 222.18 5.15E-32 32936600 9621.4 9159.05 7540.09 7594.36 9170.76 8560.36 7529.15 7152.65 8463.82 7118.36 FALSE FALSE TRUE 8493.594077 9441.229474 7947.730073 7904.090826 8494.251306 8397.085396 7819.551838 7966.878764 8114.937757 7076.019678 1.200335 1.334257097 1.123192195 1.117024992 1.200427881 1.186696162 1.10507774 1.125898334 1.146822384 1 12.78872234 -9.216268238 1.006235062 1.002197858 1.174731053 0.115632921 0.077050931 0.351040385 0.650306529 0.041852158 0.01228613 6.08E-10 9.216268238 0.172533195 MCINTEWGAFGDDGSLEDIR ddPTM_HeLa_CUDC101_4h_R1 1 MCINTEWGAFGDDGSLEDIR 20 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 0 89.541 0.0028729 0 539.79 350.13 429.2 283.28 375.09 382.13 254.27 306.91 400.34 475.05 FALSE FALSE TRUE 476.5166345 360.9170903 452.4038503 294.8333828 347.420358 374.8415069 264.0772791 341.8473938 383.8378158 472.2243815 1.009089435 0.76429152 0.958027302 0.624350191 0.735710335 0.793778385 0.559219916 0.723908818 0.812829305 1 8.883328721 -6.697838657 0.896173382 1.008962184 0.678740444 0.41857573 0.110204729 0.201705997 0.323940024 0.017079184 0.028326948 2.01E-07 6.697838657 -0.330221739 HEEEEWT(ph)DDDLVESL ddPTM_HeLa_CUDC101_4h_R1 1 HEEEEWTDDDLVESL 15 0 D6RHI7;P51946 D6RHI7 CCNH Cyclin-H 1 0 HEEEEWT(1)DDDLVESL 99.531 0.029191 41956000 2933.2 2596.2 2370.7 2250 2437.7 2436.6 1975.5 2132.3 2664.3 2685.9 TRUE FALSE FALSE 2589.374742 2676.185845 2498.867213 2341.764725 2257.875728 2390.125915 2051.695697 2375.032413 2554.476426 2669.924147 0.969830826 1.002345272 0.935931912 0.877090358 0.845670365 0.895203677 0.768447186 0.88955052 0.956759925 1 11.38258304 -6.322206563 1.76990897 0.987027856 0.846148396 0.748302122 0.035045212 0.109461719 0.670243755 0.005122152 0.008914134 4.76E-07 6.322206563 -0.140879459 MDCQECPEGYR ddPTM_HeLa_CUDC101_4h_R1 5 MDCQECPEGYR 11 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 ;;;; ;;;; 138.25 0.0083482 690751000 10182.7 8605.01 9286.7 8851.01 8597.24 8141.64 8177.9 7848.8 10444.4 8488.67 FALSE FALSE TRUE 8989.099342 8870.120159 9788.767093 9211.992445 7963.038733 7986.351782 8493.324342 8742.275666 10013.87741 8438.179013 1.065289007 1.051188905 1.160056818 1.091703842 0.943691609 0.946454415 1.006535217 1.036038185 1.186734412 1 13.04271598 -5.758598302 24.99998029 1.047818678 0.982224854 0.28126189 0.065326336 85.69422594 754050.586 0.00836401 0.016147633 1.74E-06 5.758598302 -0.065593824 MDCQETPEGYK ddPTM_HeLa_CUDC101_4h_R1 1 MDCQETPEGYK 11 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7 O75369-8 FLNB Filamin-B 0 0 112.83 0.030113 7983000 1392.3 831.55 1281.3 876.96 1066.2 1131.5 994.46 1049 1051.3 973.19 FALSE FALSE TRUE 1229.096705 857.1690699 1350.570954 912.7262193 987.5485502 1109.918523 1032.816655 1168.41392 1007.964969 967.4014226 1.270513642 0.886053142 1.396081215 0.943482404 1.020826026 1.147319506 1.067619533 1.207786026 1.041930418 1 9.917970849 LEQPEEDKYSKPTAPAPSAPPS(ph)PSAPEPPKADLFEQK ddPTM_HeLa_CUDC101_4h_R1 1 LEQPEEDKYSKPTAPAPSAPPSPSAPEPPKADLFEQK 37 3 P55198 P55198 MLLT6 Protein AF-17 1 0 LEQPEEDKY(0.001)S(0.001)KPT(0.002)APAPS(0.175)APPS(0.647)PS(0.175)APEPPKADLFEQK 57.533 0.00014292 29992000 3691.4 3140 3284.6 3495 4523.7 3307.8 3105.1 3350.8 3815.2 3679.3 TRUE FALSE FALSE 3258.699688 3236.739678 3462.175411 3637.541207 4189.995663 3244.709226 3224.864747 3732.241528 3657.935841 3657.41536 0.890984306 0.884980064 0.946618054 0.994566066 1.145616576 0.887159075 0.881733254 1.020458756 1.000142308 1 11.83660876 -6.32036293 6.899570924 0.941216695 0.983462421 0.065387279 0.077487354 0.641722712 63.81053337 0.012814265 0.019669627 4.78E-07 6.32036293 0.042245726 AEGEAEEESDFDVFPSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 AEGEAEEESDFDVFPSSPR 19 0 B1AL69;Q7L3B6 B1AL69 CDC37L1 Hsp90 co-chaperone Cdc37-like 1 1 0 AEGEAEEESDFDVFPS(0.037)S(0.963)PR 158.45 1.58E-09 0 516.91 370.11 430.26 482.48 642.17 510.49 387.17 618.76 391.46 376.03 TRUE FALSE FALSE 456.3185934 381.5126504 453.5211571 502.1576199 594.7983985 500.7532538 402.1032766 689.1971373 375.3238531 373.7933568 1.220777697 1.020651233 1.213293786 1.343409696 1.591249249 1.339652631 1.075736819 1.84379183 1.004094498 1 8.546097119 -6.318241301 2.576594904 1.101341498 1.4281487 0.455165267 0.194116986 0.224294189 2.924215231 0.029665541 0.048949715 4.81E-07 6.318241301 0.326807202 MDDPDYWR ddPTM_HeLa_CUDC101_4h_R1 1 MDDPDYWR 8 0 Q14137;A0A075B729;Q14137-2 Q14137 BOP1 Ribosome biogenesis protein BOP1 0 0 126.28 0.034754 12302000 6731.4 5458.5 6120.7 5551.3 5314.4 5976.6 4925.7 4333 6747.5 6930.9 FALSE FALSE TRUE 5942.355496 5626.669915 6451.603556 5777.706009 4922.3673 5862.606313 5115.685899 4826.251205 6469.365194 6889.674699 0.862501607 0.816681507 0.936416281 0.838603601 0.714455691 0.850926433 0.742514868 0.700504946 0.938994289 1 12.75022015 -3.565619421 0.050803362 1.430579071 6.84E-15 0.683500397 0.053546173 90.10398885 0.596993869 5.342829745 12.86590453 0.000271882 3.565619421 -1.430579071 DALGDSLQVPVS(ph)PSSTTSSR ddPTM_HeLa_CUDC101_4h_R1 3 DALGDSLQVPVSPSSTTSSR 20 0 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5;C9JVY5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 DALGDSLQVPVS(0.973)PS(0.022)S(0.005)TTSSR;DALGDSLQVPVS(0.988)PS(0.007)S(0.003)T(0.001)T(0.001)SSR;DALGDSLQVPVS(0.921)PS(0.034)S(0.034)T(0.009)T(0.001)S(0.001)SR ;; 272.3 6.92E-87 1023640000 5621 5322.34 5142.1 5324.02 6498 5952.5 5522 5726.9 5646 5094.1 TRUE FALSE FALSE 4962.114901 5486.314987 5420.09748 5541.156548 6018.655486 5838.96598 5734.98539 6378.827147 5413.26949 5063.800067 0.979919198 1.08343831 1.070361667 1.09426843 1.188564992 1.153079881 1.132545779 1.259691746 1.069013274 1 12.30600473 -6.31632764 0.727655877 0.988245364 1.194258366 0.690783007 0.044378543 0.185964445 0.193724034 0.007479231 0.017672654 4.83E-07 6.31632764 0.206013003 MDIDAPDVDVHGPDWHLK ddPTM_HeLa_CUDC101_4h_R1 2 MDIDAPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 116.78 0.00012822 25120000 17237.8 16096.1 15305.7 14695.5 17873.4 16472.4 16120.8 16470.3 16523 16913.3 FALSE FALSE TRUE 15217.21121 16592.00176 16133.17244 15294.84601 16554.91489 16158.21641 16742.58466 18345.21238 15841.91495 16812.69894 0.905102225 0.986873186 0.959582545 0.909719853 0.984667301 0.961072132 0.995829683 1.091152137 0.942258884 1 14.03726372 -4.023066874 1.369271401 0.955214247 1.219235392 0.661118189 0.029348294 1.319175244 1.421864185 0.005564511 0.560098348 9.48E-05 4.023066874 0.264021145 MDIDVPDVEVQGPDWHLK ddPTM_HeLa_CUDC101_4h_R1 1 MDIDVPDVEVQGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 127.32 6.70E-05 10115000 721.12 659.67 703.37 550.72 870.71 702.3 616.24 507.59 929.28 810.28 FALSE FALSE TRUE 636.5914067 679.9936508 741.3963098 573.180742 806.479458 688.9047976 640.0085832 565.3719939 890.9746851 805.4604185 0.790344742 0.844229754 0.920462747 0.711618757 1.001265164 0.855293174 0.794587255 0.701923994 1.10616818 1 9.653669884 -9.368870654 0.933213373 1.007096835 0.829678158 0.467087527 0.091943987 0.542214208 0.78973141 0.068843318 0.015215067 4.28E-10 9.368870654 -0.177418677 MDKEETKDWILPSDYDHAEAEAR ddPTM_HeLa_CUDC101_4h_R1 3 MDKEETKDWILPSDYDHAEAEAR 23 2 O43852;O43852-3;O43852-15;O43852-2;O43852-4;H0Y875 O43852 CALU Calumenin 0 0 ;; ;; 99.873 2.73E-05 102996000 7938.6 6690.9 6652.5 6577.6 9705.8 8523.8 7790.8 9590 7811.4 7508.8 FALSE FALSE TRUE 7008.049342 6897.038698 7012.154273 6845.862959 8989.822471 8361.222717 8091.293766 10681.68684 7489.410786 7464.137324 0.938896089 0.924023554 0.939446043 0.917167338 1.204402074 1.120186078 1.084022629 1.431067834 1.003385986 1 12.86575981 -1 0.529087912 0.963834275 17.91235594 0.749710754 0.077099442 39.82382546 0.353508759 0.014665859 764.3382984 0.1 1 16.94852166 TGS(ph)PGPELLFHEGQQK ddPTM_HeLa_CUDC101_4h_R1 2 TGSPGPELLFHEGQQK 16 0 A6NHN7;A6NHB5;A6NL54;Q14202-2;Q14202;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 0 T(0.348)GS(0.652)PGPELLFHEGQQK;T(0.1)GS(0.9)PGPELLFHEGQQK ; 138.28 0.00023139 116670000 8357.8 7372.5 6374 7108 7013 6050.7 6478.9 5682 7142 8016.8 TRUE FALSE FALSE 7378.111354 7599.637986 6718.59772 7397.894963 6495.664962 5935.292979 6728.793343 6328.815913 6847.603737 7969.115717 0.92583815 0.953636295 0.843079453 0.928320685 0.815104861 0.744786898 0.844358845 0.794167902 0.8592677 1 12.96020393 -6.316171351 0.346452879 0.996111782 0.754678878 0.414985712 0.057413892 0.650495391 0.156536757 0.021320564 0.060031045 4.83E-07 6.316171351 -0.241432904 HKMS(ph)PPPSGFGER ddPTM_HeLa_CUDC101_4h_R1 1 HKMSPPPSGFGER 13 1 A0A087WZ13;Q8IY67-2;E9PAU2;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 HKMS(1)PPPSGFGER 64.52 0.038739 13007000 1248.4 1301.8 1095.3 951.98 1138.2 1088.1 878.66 891.48 1250 1241.5 TRUE FALSE FALSE 1102.064444 1341.906915 1154.515231 990.8058592 1054.237254 1067.346305 912.5502105 992.9624797 1198.474471 1234.115503 0.892999433 1.08734305 0.935500144 0.802846943 0.854245207 0.864867432 0.739436632 0.804594446 0.971120181 1 10.26926171 -6.315734536 5.058832396 0.960441241 0.814092055 0.670507099 0.057082801 0.121836222 6.873425722 0.009916519 0.015422612 4.83E-07 6.315734536 -0.146349186 WQELS(ph)PETSGK ddPTM_HeLa_CUDC101_4h_R1 2 WQELSPETSGK 11 0 Q9NWF9-3;Q9NWF9;Q9NWF9-1 Q9NWF9-3 RNF216 E3 ubiquitin-protein ligase RNF216 1 0 WQELS(0.983)PET(0.016)S(0.001)GK;WQELS(0.747)PET(0.237)S(0.016)GK ; 158.31 0.00015296 29183000 7541.3 6605 6743.7 5263 5828 6090.9 4881.8 4428.2 7594.8 8421.3 TRUE FALSE FALSE 6657.320246 6808.492221 7108.284821 5477.647889 5398.080051 5974.726231 5070.092661 4932.288389 7281.739129 8371.209733 0.795263822 0.81332238 0.849134719 0.654343645 0.644838706 0.713723156 0.605658301 0.589196609 0.869855058 1 13.03122041 -6.315587198 0.073656314 1.476631794 3.30E-16 0.778875833 0.059637634 8.071289842 0.255341498 2.089537474 2.961430677 4.84E-07 6.315587198 -1.476631794 IQSSLSSAS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 3 IQSSLSSASPSK 12 0 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 1 0 IQSSLS(0.005)S(0.003)AS(0.976)PS(0.016)K;IQSSLS(0.001)S(0.001)AS(0.859)PS(0.139)K;IQSSLSSAS(0.627)PS(0.373)K ;; 143.05 0.0011528 105243000 7920.7 6363.3 6180.55 5696.68 6554.83 6145.4 5479.03 6126.79 6660.1 6177.4 TRUE FALSE FALSE 6992.247553 6559.345731 6514.689228 5929.015234 6071.29325 6028.186734 5690.358022 6824.239008 6385.567859 6140.65655 1.138680774 1.068183129 1.060910861 0.965534416 0.988704253 0.981684399 0.926669319 1.111320744 1.039883571 1 12.5841772 -6.314573224 7.452341112 1.067196441 0.989981449 0.267189068 0.054595535 0.301347397 37.65779252 0.009969067 0.015291747 4.85E-07 6.314573224 -0.077214992 DGPIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 DGPISPK 7 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 DGPIS(1)PK 89.886 0.033559 90768000 8163.6 5965.5 6316.7 6695 5245.2 5886.6 5084 4729.6 6473.7 7861.3 TRUE FALSE FALSE 7206.675183 6149.289984 6658.199909 6968.051038 4858.272046 5774.322913 5280.091583 5267.998546 6206.851346 7814.540638 0.92221354 0.786903577 0.852027037 0.891677625 0.621696434 0.738920326 0.675675235 0.674127731 0.794269508 1 12.93194535 -6.314049377 0.365907552 1.003312817 0.611648143 0.438727786 0.086365638 0.511490819 0.135621945 0.027401975 0.077906525 4.85E-07 6.314049377 -0.391664674 EAEEGEDDRDSANGEDDS(ph) ddPTM_HeLa_CUDC101_4h_R1 1 EAEEGEDDRDSANGEDDS 18 1 P07910-2;P07910;G3V4C1;P07910-3;G3V2D6;G3V2Q1;P07910-4 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 EAEEGEDDRDS(0.027)ANGEDDS(0.973) 97.271 0.014757 6454400 1647.3 1321.1 1254.6 1291 1002.1 1219 988.88 1117.5 1572.1 1483.3 TRUE FALSE FALSE 1454.205991 1361.801525 1322.427471 1343.65256 928.1770795 1195.749606 1027.021433 1244.711683 1507.297373 1474.477266 0.986251891 0.923582585 0.896878848 0.91127384 0.629495687 0.810965102 0.696532566 0.844171499 1.022258808 1 10.52598786 -6.313333874 1.186902046 0.991996317 0.748922089 0.693015492 0.068069378 0.164211851 0.457168202 0.010596413 0.020454681 4.86E-07 6.313333874 -0.243074228 NSPNNIS(ph)GISNPPGTPR ddPTM_HeLa_CUDC101_4h_R1 1 NSPNNISGISNPPGTPR 17 0 Q9NW25;Q9BWW4-2;Q9BWW4-3;Q9BWW4;A0A087WVT6 Q9NW25 SSBP3 Single-stranded DNA-binding protein 3 1 0 NS(0.001)PNNIS(0.857)GIS(0.14)NPPGT(0.002)PR 151.31 0.00010881 29635000 1989.8 1371.2 1376 1160.5 1221.6 1295.6 1026.1 786.82 1189.4 1542.8 TRUE FALSE FALSE 1756.55866 1413.445047 1450.390722 1207.830206 1131.485002 1270.888589 1065.677021 876.3884084 1140.372429 1533.623357 1.145365094 0.921637663 0.945728112 0.787566387 0.737785452 0.828683642 0.69487532 0.57144957 0.743580504 1 10.5827285 -6.31313709 0.996662372 1.067146245 0.692537307 0.380760713 0.125028042 0.170840089 0.336451862 0.015296654 0.031464399 4.86E-07 6.31313709 -0.374608938 VGNES(ph)PVQELK ddPTM_HeLa_CUDC101_4h_R1 2 VGNESPVQELK 11 0 Q5JSH3-2;Q5JSH3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 VGNES(1)PVQELK;VGNES(1)PVQELK ; 203.74 7.45E-17 927440000 9331.9 8260.6 7231.5 7147.8 7525.7 7285.3 7072.5 6100.8 7475 7958.1 TRUE FALSE FALSE 8238.028828 8515.099295 7622.456764 7439.318179 6970.544104 7146.345041 7345.288694 6795.290412 7166.877336 7910.764867 1.041369446 1.076393931 0.963554965 0.940404411 0.881146668 0.903369669 0.928518142 0.858992844 0.905965157 1 12.94960148 -6.312796238 2.164550557 1.024002413 0.898227944 0.506873333 0.046948467 0.103666064 0.948962208 0.004811216 0.0081366 4.87E-07 6.312796238 -0.125774468 MDSFDEDLAR ddPTM_HeLa_CUDC101_4h_R1 1 MDSFDEDLAR 10 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 0 169.09 3.98E-08 0 1859.7 1572.5 1442 1606.7 1675.4 1683.7 1484.6 1439.7 1621.9 2218.9 FALSE FALSE TRUE 1641.708785 1620.946861 1519.958882 1672.228171 1551.80908 1651.586228 1541.861519 1603.589629 1555.044596 2205.701884 0.744302209 0.734889367 0.689104404 0.758138796 0.703544342 0.74878035 0.699034412 0.727020111 0.705011229 1 11.1070221 -9.075797028 0.563040237 1.035149996 0.716969701 0 0.093509491 0.147645296 0.073504234 0.024290475 0.005087649 8.40E-10 9.075797028 -0.318180295 GLLPGLLPAPADKLT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 GLLPGLLPAPADKLTPK 17 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 GLLPGLLPAPADKLT(1)PK;GLLPGLLPAPADKLT(1)PK ; 108.75 0.0013974 60190000 10328.8 8642.2 7430.6 7484.2 9842.7 8890.5 7969.6 3668.6 7985.3 9048.3 TRUE FALSE FALSE 9118.073721 8908.455938 7832.320712 7789.438025 9116.62363 8720.928525 8276.990142 4086.218595 7656.142554 8994.480309 1.013741029 0.990435871 0.870791913 0.866024246 1.013579809 0.969586705 0.920229947 0.454302912 0.851204549 1 13.13482421 -4.245240513 3.091092487 0.983903892 0.361002243 0.814900862 0.068304033 0.098628468 1.367063034 0.008493607 0.152050561 5.69E-05 4.245240513 -0.62290165 down TVS(ph)ASSTGDLPK ddPTM_HeLa_CUDC101_4h_R1 1 TVSASSTGDLPK 12 0 P78362;H7C5L6;P78362-2 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 0 T(0.068)VS(0.928)AS(0.001)S(0.001)T(0.003)GDLPK 133.88 0.0014413 18246000 1388.8 1606 1348.3 1656.9 1686.4 1377.3 1676.3 1392.4 1617.9 1620.5 TRUE FALSE FALSE 1226.006969 1655.478956 1421.193176 1724.475544 1561.997632 1351.030297 1740.955453 1550.905188 1551.209477 1610.861194 0.761087904 1.02769808 0.882256759 1.070530192 0.969666187 0.838700629 1.080760688 0.962780154 0.962969052 1 10.65361647 -6.311413028 24.92819725 0.89675328 0.980913557 0.040120809 0.09459738 598.2336341 298413.9244 0.017255079 0.026357585 4.88E-07 6.311413028 0.084160277 MDTDLETMDLDQGGEALAPR ddPTM_HeLa_CUDC101_4h_R1 1 MDTDLETMDLDQGGEALAPR 20 0 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 66.874 0.0019644 0 473.37 379.56 380.51 391.57 463.89 440.86 424.19 465.91 449.74 509.75 FALSE FALSE TRUE 417.8822862 391.2537937 401.0815216 407.5399171 429.6697589 432.45133 440.5511504 518.9473111 431.2015268 506.7179843 0.824684142 0.77213323 0.791528096 0.804273639 0.847946535 0.853435922 0.86942079 1.024134385 0.850969455 1 8.985039223 -9.189051672 0.970343866 0.99849885 0.843658033 0.005599921 0.079470932 0.413201927 0.709480304 0.043205643 0.012686058 6.47E-10 9.189051672 -0.154840817 TLSPT(ph)PASATAPTSQGIPTS(ph)DEESTPK ddPTM_HeLa_CUDC101_4h_R1 1 TLSPTPASATAPTSQGIPTSDEESTPK 27 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 2 0 T(0.236)LS(0.319)PT(0.438)PAS(0.003)ATAPT(0.003)S(0.003)QGIPT(0.193)S(0.425)DEES(0.304)T(0.077)PK 82.581 1.73E-05 5490800 1864.5 1498.1 1323.7 1451.9 1489.8 1277.4 1170.9 1241 1710.7 1653.8 TRUE FALSE FALSE 1645.946136 1544.254685 1395.263226 1511.114758 1379.900422 1253.035723 1216.062005 1382.270424 1640.184222 1643.963124 1.001206239 0.939348738 0.848719296 0.919190179 0.839374316 0.762204276 0.739713676 0.840815955 0.997701346 1 10.68296222 -6.311351139 0.701121311 1.004964196 0.772491778 0.819904634 0.039112656 0.188054231 0.18139457 0.008302997 0.020052141 4.88E-07 6.311351139 -0.232472418 MDVNVGDIDIEGPEGK ddPTM_HeLa_CUDC101_4h_R1 3 MDVNVGDIDIEGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ;; ;; 181.74 6.92E-10 36438000 7825.9 7472 6514.2 6947.6 7831.4 7812.2 7026.7 7464.3 7564.6 7743.2 FALSE FALSE TRUE 6908.559865 7702.203463 6866.377356 7230.953158 7253.693224 7663.195301 7297.722173 8314.00574 7252.783986 7697.143102 0.897548581 1.000657434 0.892068299 0.93943338 0.942387731 0.995589558 0.948107899 1.080141766 0.942269604 1 12.91010735 -1.64901912 1.279022522 0.949723546 132.4555898 0.515610644 0.037162767 1064.414436 2.155892244 0.00645286 410380.1365 0.022437831 1.64901912 131.5058663 MDYEDDRLR ddPTM_HeLa_CUDC101_4h_R1 1 MDYEDDRLR 9 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 0 0 110.41 0.012467 79436000 3498.4 2587.9 2880.6 2852 2524.4 2753.3 2934.6 2809.4 2761.2 2424.1 FALSE FALSE TRUE 3088.322855 2667.630132 3036.333949 2968.316887 2338.180041 2700.78539 3047.788505 3129.21074 2647.382167 2409.681345 1.281631225 1.107046845 1.260056212 1.231829633 0.970327486 1.120806033 1.264809769 1.298599396 1.098644089 1 11.23462666 -9.497488668 1.220582661 0.999104415 1.195888039 0.224491389 0.100301469 0.436544956 1.155356701 0.072319163 0.017230533 3.18E-10 9.497488668 0.196783624 S(ph)KGDSDIS(ph)DEEAAQQSK ddPTM_HeLa_CUDC101_4h_R1 1 SKGDSDISDEEAAQQSK 17 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 S(0.953)KGDS(0.047)DIS(0.999)DEEAAQQSK 80.002 0.014123 32188000 4540.5 3684.3 3733 3635.5 3878 3219.5 3137.4 3274.5 4555.2 4289.1 TRUE FALSE FALSE 4008.269473 3797.808916 3934.817272 3783.771404 3591.927666 3158.093402 3258.410569 3647.255844 4367.432728 4263.588242 0.940116457 0.890754149 0.922888667 0.887461731 0.842465891 0.740712569 0.764241382 0.855442795 1.024356124 1 12.0578524 -6.310638127 0.45384216 0.989320468 0.763281586 0.796672812 0.03910476 0.38544274 0.153424332 0.012752537 0.036118761 4.89E-07 6.310638127 -0.226038882 SQSFNTDTTTSGISSMSS(ph)SPSR ddPTM_HeLa_CUDC101_4h_R1 2 SQSFNTDTTTSGISSMSSSPSR 22 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 SQSFNTDTTTSGISSMS(0.147)S(0.6)S(0.238)PS(0.015)R;SQSFNTDTTTSGISSMS(0.008)S(0.91)S(0.082)PSR ; 372.52 8.96E-279 12307000 6145.9 4883.2 4174.7 4360.5 4193.9 4151.5 3702.8 3151.03 5151.8 5237 TRUE FALSE FALSE 5425.486919 5033.645604 4400.39691 4538.340038 3884.524352 4072.317054 3845.618236 3509.730518 4939.440623 5205.850091 1.042190387 0.966920967 0.845279221 0.871776935 0.746184443 0.782257841 0.738710906 0.674189701 0.948824983 1 12.34591805 -6.309819068 0.883703006 1.02251841 0.72248028 0.869624128 0.042826468 0.108972821 0.168560327 0.00723446 0.015695342 4.90E-07 6.309819068 -0.30003813 MEDSVGCLETAEEVK ddPTM_HeLa_CUDC101_4h_R1 2 MEDSVGCLETAEEVK 15 0 P35579 P35579 MYH9 Myosin-9 0 0 ; ; 158.34 0.00043944 11406200 3201.6 2839.7 2753.2 2826.4 2896.4 2673.74 2661.8 2707.8 3149.7 2510.28 FALSE FALSE TRUE 2826.313301 2927.187791 2902.04632 2941.672809 2682.738342 2622.742864 2764.466518 3016.045007 3019.868033 2495.348743 1.132632587 1.173057593 1.16298226 1.1788624 1.075095555 1.051052632 1.107847761 1.208666731 1.210198791 1 11.28502574 -9.034241148 0.826238313 0.999851171 1.133463022 0 0.079105685 0.404484795 0.503294855 0.032652764 0.009948586 9.24E-10 9.034241148 0.133611851 DIDISS(ph)PEFK ddPTM_HeLa_CUDC101_4h_R1 1 DIDISSPEFK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 DIDIS(0.123)S(0.877)PEFK 208.33 6.59E-24 2523400000 17888 16303 14127 13439 15760 14408 13601 11422 14601 14300 TRUE FALSE FALSE 15791.19576 16805.27611 14890.74835 13987.10051 14597.4162 14133.19141 14125.59513 12722.23431 13999.1406 14214.94296 1.110887029 1.182226067 1.047541899 0.983971624 1.026906421 0.9942489 0.993714513 0.894990176 0.984818626 1 13.79512069 -6.308310845 4.636454835 1.065599875 0.982833263 0.33931604 0.060425197 0.224611535 10.95485386 0.010265518 0.016101006 4.92E-07 6.308310845 -0.082766612 MEEEQHHWDDRR ddPTM_HeLa_CUDC101_4h_R1 1 MEEEQHHWDDRR 12 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 0 32.999 0.040466 7147100 789.11 581.29 641.22 617.92 599.19 572.16 465.29 584.65 511.82 641.32 FALSE FALSE TRUE 696.611722 599.1988559 675.8862928 643.1214485 554.9889475 561.2470013 483.2363912 651.2041928 490.722563 637.5054001 1.092715014 0.939911812 1.060204812 1.008809413 0.870563524 0.880379995 0.758011448 1.02148812 0.769754363 1 9.316293752 -5.811755162 4.255826529 1.036432352 0.872562584 0.017951564 0.110005948 0.120468131 4.544277486 0.010269119 0.019583264 1.54E-06 5.811755162 -0.163869768 DLS(ph)LEEIQK ddPTM_HeLa_CUDC101_4h_R1 3 DLSLEEIQK 9 0 P16949;P16949-2;A2A2D0;E5RGX5;Q93045;Q93045-2 P16949 STMN1;STMN2 Stathmin;Stathmin-2 1 0 DLS(1)LEEIQK;DLS(1)LEEIQK;DLS(1)LEEIQK ;; 139.32 0.0019548 50237000 6279.2 6041.7 5572.3 4841.7 5634.2 4868.5 4745.8 5098.9 6290.3 6416.7 TRUE FALSE FALSE 5543.161695 6227.837616 5873.555393 5039.165454 5218.576291 4775.641474 4928.847096 5679.338166 6031.011172 6378.533183 0.86903392 0.976374573 0.920831675 0.790019478 0.818146765 0.74870528 0.772724223 0.890383103 0.945516939 1 12.63900898 -6.308020678 4.884638077 0.939506813 0.79971386 0.683752956 0.04707667 0.115558005 6.423489293 0.009093163 0.014214143 4.92E-07 6.308020678 -0.139792953 ILESITVSSLMAT(ph)PQDPK ddPTM_HeLa_CUDC101_4h_R1 1 ILESITVSSLMATPQDPK 18 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 ILESIT(0.001)VS(0.001)S(0.007)LMAT(0.992)PQDPK 128.28 0.0010403 9342600 2841.7 2546.5 2582.8 2179.6 2643.1 2759.2 2156.3 678.21 2783 2913 TRUE FALSE FALSE 2508.600234 2624.954647 2722.433981 2268.493509 2448.123779 2706.572857 2239.469213 755.414685 2668.283562 2895.673346 0.86632708 0.906509241 0.940173029 0.783407946 0.84544197 0.934695504 0.773384614 0.260877038 0.921472571 1 11.49968315 -4.244219737 2.352120822 0.916379775 0.0852488 0.914655788 0.058178385 0.146285338 0.919960815 0.010229291 0.251771663 5.70E-05 4.244219737 -0.831130975 down MEEFKDQLPADECNK ddPTM_HeLa_CUDC101_4h_R1 2 MEEFKDQLPADECNK 15 1 P38646 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 0 ; ; 78.814 0.027836 43144000 2961.3 2169.35 2000.09 2575.8 2360.17 2296.31 2199.9 1749.31 1799.42 2447.89 FALSE FALSE TRUE 2614.180903 2236.185102 2108.220915 2680.852258 2186.064961 2252.511713 2284.75088 1948.444379 1725.247146 2433.329841 1.074322461 0.918981498 0.8663934 1.101721687 0.89838415 0.925691073 0.938940065 0.800731716 0.709006694 1 11.24871618 -1.94436353 0.307087401 1.031534903 2.14E-18 0 0.12375779 20.73245396 0.449961458 0.027493383 10.7661566 0.011366754 1.94436353 -1.031534903 MEELHNQEVQK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 MEELHNQEVQKR 12 1 Q15233;Q15233-2;H7C367;C9JYS8 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 1 MEELHNQEVQK(1)R 55.04 0.032984 376410 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 LGELTMQLHPVADS(ph)SPAGAQIK ddPTM_HeLa_CUDC101_4h_R1 1 LGELTMQLHPVADSSPAGAQIK 22 0 Q8IXM2-2 Q8IXM2-2 BAP18 Chromatin complexes subunit BAP18 1 0 LGELTMQLHPVADS(0.641)S(0.359)PAGAQIK 151 2.32E-07 28869000 2247.4 1849.3 1859 2061.8 2189.7 2136.7 2042.6 1674.5 1822.8 2072 TRUE FALSE FALSE 1983.963179 1906.274741 1959.503163 2145.889116 2028.170193 2095.946007 2121.383766 1865.118311 1747.663412 2059.675652 0.963240585 0.925521812 0.951364921 1.041857787 0.98470368 1.017609741 1.029960113 0.905539816 0.848513896 1 11.00820145 -6.304767562 24.9986802 0.974875289 0.998404942 0.0462035 0.056379682 1009.622557 582511.94 0.006210712 0.009487108 4.96E-07 6.304767562 0.023529653 SS(ph)GSPEPSPAIAK ddPTM_HeLa_CUDC101_4h_R1 1 SSGSPEPSPAIAK 13 0 K7ELE9;Q66K64 K7ELE9 DCAF15 DDB1- and CUL4-associated factor 15 1 0 S(0.154)S(0.517)GS(0.329)PEPSPAIAK 133.04 0.00099483 75045000 3792.6 3023.2 3087.3 2900.5 3152.4 2454.2 2632.7 2883.5 2922.4 3431.3 TRUE FALSE FALSE 3348.037177 3116.341209 3254.208777 3018.794927 2919.853732 2407.390224 2734.244121 3211.745984 2801.937435 3410.890475 0.98157276 0.913644467 0.954064283 0.885045987 0.856038549 0.705795229 0.801621788 0.941615103 0.821468017 1 11.73593271 -6.301512942 1.012653438 0.990524387 0.813353443 0.174201356 0.078843662 0.243153846 0.494103442 0.010360136 0.021336478 4.99E-07 6.301512942 -0.177170944 MEGPGGSGFHLR ddPTM_HeLa_CUDC101_4h_R1 1 MEGPGGSGFHLR 12 0 F8W870 F8W870 OLFM1 0 0 68.355 0.024694 6181800 2714.6 1794.6 1956.5 1943.8 1689.5 1809.1 1830.3 1557.9 1863.4 1976.9 FALSE FALSE TRUE 2396.398703 1849.889499 2062.274308 2023.076566 1564.868951 1774.594432 1900.895284 1735.245039 1786.589863 1965.141311 1.219453629 0.941351896 1.049427996 1.02948147 0.796313701 0.903036551 0.967307172 0.883012855 0.909140657 1 10.94041734 -6.281531284 1.336508571 1.096115297 0.897743247 0.135770256 0.101719466 0.310363511 1.090326943 0.017379654 0.03290708 5.23E-07 6.281531284 -0.198372051 QLSSSS(ph)SYSGDISR ddPTM_HeLa_CUDC101_4h_R1 1 QLSSSSSYSGDISR 14 0 A0A0A0MS99;I3L4X2;P33527-8;P33527-6;P33527-7;P33527-5;P33527-4;P33527-2;P33527-3;P33527;P33527-9 A0A0A0MS99 ABCC1 Multidrug resistance-associated protein 1 1 0 QLS(0.103)S(0.103)S(0.103)S(0.341)S(0.341)YS(0.009)GDISR 168.55 5.75E-07 4228400 801.93 618.11 456.22 508.96 477.13 359.69 452.37 493.78 489.35 450.92 TRUE FALSE FALSE 707.928981 637.1532365 480.8846332 529.7175887 441.9330705 352.8295125 469.8180624 549.9899193 469.1787859 448.2379078 1.579359909 1.421462186 1.072833477 1.181777756 0.985934172 0.787147866 1.048144421 1.227004476 1.046718222 1 8.808120853 -6.30136174 1.8835618 1.288294717 1.011264357 0.193449825 0.194868813 0.426540443 2.953447192 0.040435589 0.070220597 5.00E-07 6.30136174 -0.277030359 AVSEDVSNGSSGS(ph)PSPGDTLPWNLGK ddPTM_HeLa_CUDC101_4h_R1 2 AVSEDVSNGSSGSPSPGDTLPWNLGK 26 0 Q15149-3;Q15149-2;H0YDN1;E9PMV1 Q15149-3 PLEC Plectin 1 0 AVSEDVSNGS(0.001)S(0.039)GS(0.867)PS(0.092)PGDTLPWNLGK;AVSEDVSNGS(0.006)S(0.133)GS(0.645)PS(0.215)PGDTLPWNLGK ; 148.69 4.22E-11 17483200 12218.2 10389.5 9785.5 8961.2 10869.8 9305.7 9434.6 8372.3 11629.6 9986.9 TRUE FALSE FALSE 10786.00112 10709.58818 10314.53373 9326.67647 10067.95651 9128.209277 9798.495682 9325.36879 11150.22297 9927.497475 1.086477347 1.078780247 1.038986286 0.939479108 1.014148484 0.919487444 0.987005608 0.939347385 1.12316553 1 13.27721437 -6.299516794 8.641142878 1.045249159 0.96218565 0.600607401 0.041420836 0.23268387 50.33075151 0.006290229 0.009654538 5.02E-07 6.299516794 -0.083063509 VMS(ph)PENFPTASVEGK ddPTM_HeLa_CUDC101_4h_R1 1 VMSPENFPTASVEGK 15 0 H3BTW3;Q3L8U1-2;Q3L8U1-3;Q3L8U1;H3BSP3;H3BRU9 H3BTW3 CHD9 Chromodomain-helicase-DNA-binding protein 9 1 0 VMS(1)PENFPTASVEGK 110.35 0.0024867 9684100 1750.1 1530.8 1089.2 1329.6 1241.3 1180.1 1065.9 938.38 1365.2 1546.3 TRUE FALSE FALSE 1544.955931 1577.962134 1148.085447 1383.826835 1149.731772 1157.591559 1107.01212 1045.201386 1308.925878 1537.102539 1.005109218 1.026582218 0.746915328 0.900282707 0.747986385 0.753099764 0.720194061 0.679981563 0.851554041 1 10.58599769 -6.298862436 0.813485031 1.008759322 0.708405267 0.60932437 0.078063338 0.17644906 0.230565003 0.011055374 0.025123314 5.03E-07 6.298862436 -0.300354055 SVGDDEELQQNESGTS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SVGDDEELQQNESGTSPK 18 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 SVGDDEELQQNESGT(0.033)S(0.967)PK 232.37 1.22E-43 8048200 2611 2466.7 2144.8 1923.7 2311 1902.7 1821.8 1887.9 2580.8 2306.3 TRUE FALSE FALSE 2304.942538 2542.696103 2260.754376 2002.156801 2140.522134 1866.409168 1892.067436 2102.810905 2474.418332 2292.582025 1.005391525 1.109097112 0.986117116 0.873319593 0.933673086 0.814107913 0.825299778 0.917223847 1.079315071 1 11.16275764 -6.298719129 4.069698505 1.012029525 0.869229633 0.714160022 0.050707688 0.095928519 3.539872133 0.007167415 0.011405731 5.03E-07 6.298719129 -0.142799892 MEIVELEDHPFFVGVQYHPEFLSR ddPTM_HeLa_CUDC101_4h_R1 1 MEIVELEDHPFFVGVQYHPEFLSR 24 0 B4E1E0;P17812-2;P17812;A0A3B3IRI2 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 0 0 143.09 1.19E-08 6014400 1896.1 1907 1481.8 1658 2172.8 1810.2 1905.7 1585.5 1227.9 2712.2 FALSE FALSE TRUE 1673.842032 1965.75241 1561.91059 1725.620406 2012.516873 1775.673451 1979.203487 1765.986911 1177.285442 2696.067714 0.620845695 0.729118338 0.57932914 0.640050841 0.746463771 0.658616044 0.734107484 0.655023204 0.436667609 1 11.39664102 -9.286501549 0.8515915 1.015303683 0.669156756 0 0.181522796 0.190459297 0.230257097 0.043985963 0.009995866 5.17E-10 9.286501549 -0.346146927 MEK(ac)RTPHEK(ac)EK ddPTM_HeLa_CUDC101_4h_R1 1 MEKRTPHEKEK 11 3 F8VWL0;F8VX55;Q12800-2;Q12800-3;Q12800-4;Q12800 F8VWL0 TFCP2 Alpha-globin transcription factor CP2 0 2 MEK(1)RTPHEK(1)EK 48.568 0.03816 0 784.26 431.23 534.06 470.43 910.06 895.93 786.22 644.77 817.02 743.73 FALSE TRUE FALSE 692.3302317 444.5156852 562.932899 489.6161688 842.9266869 878.841628 816.5447688 718.1680105 783.3420898 739.3062609 0.936459311 0.601260545 0.761433967 0.662264334 1.140159 1.188738246 1.104474305 0.971407992 1.059563717 1 9.530028321 -5.668412358 24.1084659 0.901879255 1.107688405 0.382612343 0.151462832 14.20906903 3674.842487 0.024295711 0.048591415 2.15E-06 5.668412358 0.20580915 SSLS(ph)GDEEDELFK ddPTM_HeLa_CUDC101_4h_R1 2 SSLSGDEEDELFK 13 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 S(0.009)S(0.003)LS(0.988)GDEEDELFK;S(0.001)S(0.007)LS(0.991)GDEEDELFK ; 185.95 5.09E-11 18874000 4425.7 3746.7 4062.2 3061.6 4162.7 4025 3678.6 3136.5 4516.8 4181 TRUE FALSE FALSE 3906.926155 3862.131386 4281.814819 3186.465281 3855.625914 3948.229831 3820.484834 3493.546482 4330.615592 4156.131226 0.940039172 0.929261175 1.030240526 0.766690248 0.927695904 0.949977182 0.919240666 0.840576558 1.041982401 1 12.02102549 -6.297614267 24.99988002 0.971101617 0.889414071 0.43195087 0.059616599 505.7243506 349496.9415 0.008557877 0.013072641 5.04E-07 6.297614267 -0.081687546 HVS(ph)PVTPPR ddPTM_HeLa_CUDC101_4h_R1 2 HVSPVTPPR 9 0 Q13443 Q13443 ADAM9 Disintegrin and metalloproteinase domain-containing protein 9 1 0 HVS(0.995)PVT(0.005)PPR;HVS(0.997)PVT(0.003)PPR ; 85.924 0.022076 17902900 8810.5 5615.1 5239.7 6775.1 5654.4 5719.5 5377 4232.8 5137.4 6622.3 TRUE FALSE FALSE 7777.746546 5788.094575 5522.974031 7051.417862 5237.286177 5610.410067 5584.392691 4714.644842 4925.634198 6582.910265 1.181505783 0.879260744 0.83898668 1.071170285 0.795588268 0.852268957 0.848316697 0.716194609 0.748245685 1 12.68450982 -6.296559658 0.743042033 1.079463556 0.796321305 0 0.14464813 0.425207719 0.46142092 0.023599285 0.056118176 5.05E-07 6.296559658 -0.283142251 MELK(ac)ADQLYK ddPTM_HeLa_CUDC101_4h_R1 1 MELKADQLYK 10 1 P08559-3;P08559;P08559-2;P08559-4;P29803;Q5JPU2;Q5JPU0;Q5JPT9;Q5JPU1 P08559-3 PDHA1;PDHA2 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial" 0 1 MELK(1)ADQLYK 143.89 0.00043197 281750 500.78 259.09 139.3 204.97 188.21 342.05 273.69 186.84 135.11 433.38 FALSE TRUE FALSE 442.0793275 267.0722558 146.8309794 213.3295626 174.3261233 335.5259661 284.246315 208.1091104 129.5407086 430.8022365 1.026176956 0.619941665 0.340831516 0.4951914 0.404654638 0.778839889 0.659806962 0.483073421 0.300696463 1 8.750881929 -7.206240619 4.387408809 1.013116193 0.534402143 0 0.253756727 0.073144381 2.97464801 0.020356735 0.024783064 6.22E-08 7.206240619 -0.47871405 MEMELDYAEDATER ddPTM_HeLa_CUDC101_4h_R1 1 MEMELDYAEDATER 14 0 Q9UKJ3;Q9UKJ3-2;K7EKU0 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 0 0 150.06 1.61E-06 0 363.13 319.44 379.16 234.49 450.22 382.71 400.42 291.4 262.29 431.74 FALSE FALSE TRUE 320.5644519 329.2815678 399.6585365 244.0535158 417.0081676 375.4104444 415.8643335 324.5717981 251.4782952 429.1719913 0.746937028 0.767248503 0.931231638 0.568661331 0.971657461 0.87473193 0.96899225 0.756274418 0.585961573 1 8.745412115 -9.467051668 1.211165878 0.999757387 0.819835081 0 0.173206901 0.522226759 1.373375689 0.077647464 0.019247204 3.41E-10 9.467051668 -0.179922306 SAEPRPELGPGQET(ph)GTNSR ddPTM_HeLa_CUDC101_4h_R1 1 SAEPRPELGPGQETGTNSR 19 1 Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5;Q9Y4B5-4 Q9Y4B5-2 MTCL1 Microtubule cross-linking factor 1 1 0 SAEPRPELGPGQET(0.81)GT(0.16)NS(0.03)R 107.46 0.0067868 6571200 1574.9 1472.3 1411.3 1346.9 1521.9 1481.4 1362.3 1381.4 1496.7 1552.1 TRUE FALSE FALSE 1390.292609 1517.659818 1487.599147 1401.832404 1409.632469 1453.144763 1414.844367 1538.652992 1435.005393 1542.86804 0.901109216 0.983661453 0.964177822 0.908588659 0.913644221 0.941846435 0.91702228 0.997268044 0.930089518 1 10.59139896 -6.296404098 24.72882052 0.955616936 0.933756752 0.077333991 0.034452138 1331.912302 941993.3996 0.006635881 0.010136676 5.05E-07 6.296404098 -0.021860183 MEPITK(ac)ISHIPASR ddPTM_HeLa_CUDC101_4h_R1 2 MEPITKISHIPASR 14 1 B5MBX1;A0A0C4DFT8;G3XAA4;Q9NQC1-3;Q9NQC1-2;Q9NQC1 B5MBX1 JADE2 Protein Jade-2 0 1 ; MEPITK(1)ISHIPASR;MEPITK(1)ISHIPASR 100.41 0.014845 2090880 978.06 830.19 577.36 712.69 1113.37 887.57 944.94 1003.73 725.46 809.9 FALSE TRUE FALSE 863.4132894 855.7671699 608.573828 741.7565787 1031.238913 870.641081 981.3866523 1117.990566 695.5562317 805.0826788 1.072452945 1.062955635 0.755914696 0.921342116 1.28091057 1.081430646 1.218988656 1.388665531 0.863956274 1 9.65299314 -4.362930632 0.841898384 1.0154958 1.548133272 0.51540187 0.127647067 1.361433093 0.77241577 0.019632604 0.6484247 4.34E-05 4.362930632 0.532637472 LENARLS(ph)SEMNTSTVNSAR ddPTM_HeLa_CUDC101_4h_R1 1 LENARLSSEMNTSTVNSAR 19 1 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 1 0 LENARLS(0.96)S(0.039)EMNT(0.001)S(0.001)TVNSAR 78.794 0.037248 7798900 497.15 530.35 500.19 375.91 452.03 549.48 460.1 360.6 719.61 572.93 TRUE FALSE FALSE 438.8748306 546.6894549 527.2317844 391.2412346 418.6846475 538.9995845 477.8462111 401.6492464 689.9473712 569.5221869 0.770601815 0.959908968 0.925744065 0.686963991 0.735150723 0.946406649 0.839030019 0.70523898 1.211449505 1 9.153608236 -6.294295576 24.57601656 0.897447748 0.792164313 0.257884571 0.133329225 701.2201309 524502.3406 0.017103228 0.026126879 5.08E-07 6.294295576 -0.105283435 ERS(ph)GGEQAQDWDALPPK ddPTM_HeLa_CUDC101_4h_R1 1 ERSGGEQAQDWDALPPK 17 1 V9GYP5;A0A087WWQ2;Q92979 V9GYP5 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 1 0 ERS(1)GGEQAQDWDALPPK 94.911 0.0027212 17832000 3101.1 2863.6 2311 2162.1 2697.4 2685.4 2133.8 1225.1 2917.9 3594.3 TRUE FALSE FALSE 2737.593759 2951.824122 2435.93965 2250.279783 2498.418176 2634.180469 2216.101381 1364.560432 2797.622927 3572.920944 0.766206082 0.826165529 0.681778211 0.629815162 0.699264891 0.737262456 0.620249207 0.381917331 0.783007229 1 11.80288828 -6.29422506 0.086240627 1.410720676 2.85E-12 0.576071356 0.098700048 8.770746182 0.323413693 2.070244886 3.12771423 5.08E-07 6.29422506 -1.410720676 REEGPPPPSPDGASS(ph)DAEPEPPSGR ddPTM_HeLa_CUDC101_4h_R1 1 REEGPPPPSPDGASSDAEPEPPSGR 25 1 Q9NTJ3;C9JWF0;C9IYK2;C9JJ64;C9JR83;E9PD53;Q9NTJ3-2;F8WCB7 Q9NTJ3 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 0 REEGPPPPSPDGAS(0.148)S(0.758)DAEPEPPS(0.095)GR 164.99 8.96E-12 16240000 1015.9 1097.6 905.97 758.66 657.21 677.4 855.47 718.76 1145.4 1133.4 TRUE FALSE FALSE 896.817742 1131.415755 954.9494786 789.601434 608.7289276 664.4797236 888.4657645 800.5807331 1098.186127 1126.658486 0.795997858 1.004222458 0.847594449 0.700834764 0.54029587 0.589779185 0.788584806 0.710579774 0.974728492 1 10.13783456 -6.293675683 3.332422412 0.908841493 0.658423734 0.696082605 0.086094843 0.137171184 3.147993797 0.015983814 0.025943156 5.09E-07 6.293675683 -0.250417759 RSRS(ph)ESETSTMAAK ddPTM_HeLa_CUDC101_4h_R1 2 RSRSESETSTMAAK 14 2 A0A087WVF1;Q96B23-2;Q96B23 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 RS(0.318)RS(0.615)ES(0.066)ETSTMAAK;RS(0.065)RS(0.926)ES(0.009)ETSTMAAK ; 80.638 0.0028604 7901600 1196.85 1666.11 1726.74 2190.2 2994.7 2678.31 3001.3 2750.9 2084.37 1115.21 TRUE FALSE FALSE 1056.557057 1717.440874 1820.092788 2279.525823 2773.786947 2627.225699 3117.061146 3064.051336 1998.451386 1108.576681 0.953075304 1.549230561 1.641828498 2.056263551 2.502115545 2.36990886 2.811768639 2.763950738 1.802718224 1 10.11449285 -6.293492172 0.777809291 0.954459009 2.75745669 0.785391565 0.295579363 0.070486955 0.083997132 0.025659344 0.059829718 5.09E-07 6.293492172 1.802997681 up EPDPDS(ph)DWEPEER ddPTM_HeLa_CUDC101_4h_R1 1 EPDPDSDWEPEER 13 0 Q9NPE2-3;Q9NPE2 Q9NPE2-3 NGRN Neugrin 1 0 EPDPDS(1)DWEPEER 82.515 0.027354 20116000 1691.1 1351 1375.9 885.86 1515.8 1193.2 1081.4 930.29 1129.1 1339.4 TRUE FALSE FALSE 1492.871822 1392.622709 1450.285316 921.9891998 1403.982454 1170.441698 1123.10996 1036.190453 1082.55802 1331.433189 1.121251771 1.045957634 1.089266309 0.692478757 1.054489602 0.879084063 0.843534598 0.778251933 0.813077238 1 10.37876432 -6.29229051 24.99954052 1.059867314 0.862256924 0.282276993 0.119492191 396.7061719 321461.3617 0.014037282 0.021443699 5.10E-07 6.29229051 -0.197610389 ELT(ph)DEEAER ddPTM_HeLa_CUDC101_4h_R1 1 ELTDEEAER 9 0 Q9Y266;A0A0A0MSU9;A0A0A0MSS4 Q9Y266 NUDC Nuclear migration protein nudC 1 0 ELT(1)DEEAER 141.1 0.0082882 33274000 1676.9 1211.4 1258.2 1067.3 1233.5 1082.5 947.78 1142.8 1377.6 1238.2 TRUE FALSE FALSE 1480.336324 1248.721798 1326.222098 1110.829107 1142.507162 1061.853116 984.3361921 1272.891733 1320.814745 1230.835131 1.202708865 1.014532139 1.077497761 0.902500326 0.928237368 0.862709464 0.799730335 1.034169159 1.073104522 1 10.26542181 -6.291129488 2.21960531 1.092480843 0.893543274 0.535186796 0.076630077 0.199287418 1.919616686 0.01477661 0.025124393 5.12E-07 6.291129488 -0.198937569 RLSSSTVAISYS(ph)PDR ddPTM_HeLa_CUDC101_4h_R1 2 RLSSSTVAISYSPDR 15 1 Q96T17;Q96T17-2;Q96T17-5 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 RLSSSTVAIS(0.024)YS(0.976)PDR;RLSSSTVAIS(0.001)YS(0.999)PDR ; 127.05 0.0015476 14831000 1468.47 1321.11 1131.74 1764.81 1811.75 1579.92 1206.83 1418.96 1502.45 1184.2 TRUE FALSE FALSE 1296.338173 1361.811833 1192.925288 1836.78658 1678.100812 1549.785658 1253.377837 1580.488671 1440.518375 1177.156326 1.101245556 1.156865748 1.01339581 1.560359096 1.425554767 1.316550423 1.064750543 1.342632781 1.223727336 1 10.20109021 -6.290676012 24.95414532 1.056592497 1.329799953 0.436351868 0.133405138 415.2677719 354439.75 0.019975561 0.030516062 5.12E-07 6.290676012 0.273207456 SILAKPSSS(ph)PDPR ddPTM_HeLa_CUDC101_4h_R1 2 SILAKPSSSPDPR 13 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 SILAKPS(0.023)S(0.074)S(0.902)PDPR;SILAKPS(0.001)S(0.063)S(0.937)PDPR ; 197.06 8.97E-16 113187000 3558.5 3002.3 3014.7 3246.5 3397.2 3450.8 3566.2 2413.3 3274.9 3398.7 TRUE FALSE FALSE 3141.378024 3094.797304 3177.683801 3378.906303 3146.595324 3384.981739 3703.749529 2688.020317 3139.907236 3378.484381 0.92981872 0.91603126 0.940564893 1.000124885 0.931362993 1.001923158 1.096275463 0.79562905 0.929383381 1 11.72216047 -6.290227394 24.01541617 0.959603567 0.972528272 0 0.074578953 3057.241091 2550390.396 0.01099772 0.016801588 5.13E-07 6.290227394 0.012924705 GFGFGQGAGALVHS(ph)E ddPTM_HeLa_CUDC101_4h_R1 5 GFGFGQGAGALVHSE 15 0 E9PP21;P21291 E9PP21 CSRP1 Cysteine and glycine-rich protein 1 1 0 GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E ;;;; 187.74 6.05E-11 1247429000 22226.7 20149 18991.8 17667.2 20166.1 19726.5 19197.4 16398.2 20117.3 20433.2 TRUE FALSE FALSE 19621.31992 20769.76681 20018.55416 18387.74478 18678.48698 19350.24988 19937.85015 18264.9048 19288.05638 20311.66242 0.966012506 1.022553762 0.98556946 0.905280149 0.919594201 0.952666969 0.981596176 0.899232393 0.949605009 1 14.3100207 -6.290226659 20.84000315 0.987162503 0.934942641 0.460329666 0.028564195 60.88732271 44078.02754 0.004194356 0.006408993 5.13E-07 6.290226659 -0.052219862 NIGRDT(ph)PTSAGPNSFNK ddPTM_HeLa_CUDC101_4h_R1 4 NIGRDTPTSAGPNSFNK 17 1 Q8WW12;Q8WW12-3 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 0 NIGRDT(0.999)PT(0.001)SAGPNSFNK;NIGRDT(0.983)PT(0.016)S(0.001)AGPNSFNK;NIGRDT(0.968)PT(0.025)S(0.007)AGPNSFNK;NIGRDT(0.984)PT(0.013)S(0.003)AGPNSFNK ;;; 168.42 1.02E-05 228713000 13738.3 11541.3 11307.6 10582.5 12053.8 11257.6 10784.1 9326.8 11735.4 12055 TRUE FALSE FALSE 12127.9173 11896.87377 11918.92306 11014.10009 11164.61519 11042.88004 11200.04635 10388.52521 11251.66184 11983.29632 1.012068547 0.992788082 0.994628084 0.919121066 0.931681475 0.921522738 0.934638187 0.86691716 0.938945474 1 13.54873719 -6.289417945 3.099249515 1.004702454 0.915963228 0.610004041 0.027591734 0.067972225 1.326633448 0.002691895 0.004407666 5.14E-07 6.289417945 -0.088739226 AILVDLEPGTMDS(ph)VR ddPTM_HeLa_CUDC101_4h_R1 2 AILVDLEPGTMDSVR 15 0 Q5JP53;P07437;G3V5W4;G3V2R8;G3V3R4;G3V2N6;Q9BVA1;Q13885;A0A0B4J269;Q13509 Q5JP53;Q9BVA1;A0A0B4J269 TUBB;TUBB3;TUBB2B;TUBB2A Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain 1 0 AILVDLEPGTMDS(1)VR;AILVDLEPGTMDS(1)VR ; 249.36 8.00E-56 16499400 4363.6 4063.2 3724.2 3472.4 4037.1 3929.7 3829.5 3127.2 3590.9 3773 TRUE FALSE FALSE 3852.105423 4188.382376 3925.541517 3614.019481 3739.291176 3854.74752 3977.205098 3483.187807 3442.881582 3750.558028 1.027075276 1.116735788 1.046655321 0.963595138 0.996995953 1.027779731 1.060430226 0.928711883 0.917965155 1 11.87288955 -6.288868214 24.73365045 1.024869636 1.000985797 0.045342009 0.056440228 1619.885856 1460710.823 0.007338985 0.011212415 5.14E-07 6.288868214 -0.023883839 NFYES(ph)DDDQKEK ddPTM_HeLa_CUDC101_4h_R1 2 NFYESDDDQKEK 12 1 O00203-3;O00203 O00203-3 AP3B1 AP-3 complex subunit beta-1 1 0 NFYES(1)DDDQKEK;NFYES(1)DDDQKEK ; 173.71 3.16E-06 214120000 8851.5 6780.9 6000.5 6582.6 6272.8 6312.9 5820.2 4817.2 6775.1 7070.5 TRUE FALSE FALSE 7813.940588 6989.811492 6324.905181 6851.06688 5810.068041 6192.491951 6044.687064 5365.570576 6495.82751 7028.444352 1.111759615 0.994503356 0.899901154 0.974762912 0.826650643 0.881061532 0.860032002 0.76340799 0.924219811 1 12.77898969 -6.288665274 0.961412158 1.051797846 0.830839784 0.53072261 0.065117924 0.215599465 0.394740512 0.011041102 0.023433282 5.14E-07 6.288665274 -0.220958061 METASELGREEEDDVDLELR ddPTM_HeLa_CUDC101_4h_R1 1 METASELGREEEDDVDLELR 20 1 Q9HCS7 Q9HCS7 XAB2 Pre-mRNA-splicing factor SYF1 0 0 93.115 0.0018113 1878700 608.04 588.01 393.7 562.3 797.68 552.09 630.83 743.84 602.39 513.37 FALSE FALSE TRUE 536.7664729 606.1258911 414.9846129 585.2330245 738.8367356 541.5598031 655.1613244 828.5157389 577.5592292 510.3164524 1.051830625 1.18774515 0.813190739 1.146804148 1.447801128 1.061223483 1.283833436 1.62353327 1.131766821 1 8.995248344 -1 0.403425826 1.019722813 10.24036144 0.52723249 0.150628882 33.1475163 0.389434155 0.034029877 246.2417477 0.1 1 9.220638624 PST(ph)PLDGVSTPKPLSK ddPTM_HeLa_CUDC101_4h_R1 1 PSTPLDGVSTPKPLSK 16 1 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 PS(0.019)T(0.98)PLDGVSTPKPLSK 77.222 0.024115 15898000 1716.8 1018.7 1008.6 956.69 684.68 1000.2 674.93 547.27 1034.1 1062.6 TRUE FALSE FALSE 1515.559306 1050.08494 1063.127967 995.7079534 634.1725205 981.1228514 700.9622762 609.5690047 991.4739603 1056.279608 1.434808828 0.99413539 1.006483472 0.942655662 0.60038319 0.928847669 0.663614322 0.577090573 0.93864726 1 10.04477607 -6.288500222 1.241761659 1.198424649 0.699706959 0.497597079 0.169155386 0.243277089 0.739742877 0.032871558 0.063407747 5.15E-07 6.288500222 -0.49871769 (ac)SIFT(ph)PTNQIR ddPTM_HeLa_CUDC101_4h_R1 2 SIFTPTNQIR 10 0 Q9Y3A5;A0A087X020;F8WE72 Q9Y3A5 SBDS Ribosome maturation protein SBDS 1 0 S(0.047)IFT(0.941)PT(0.011)NQIR;SIFT(0.992)PT(0.008)NQIR ; 100.69 0.0011717 4446200 188.539 182.889 130.03 307.72 376.84 201.336 57.674 272.81 146.21 202.94 TRUE FALSE FALSE 166.4387442 188.5235933 137.0598151 320.2701517 349.041264 197.4958512 59.8985055 303.8655877 140.1831619 201.7329039 0.825045102 0.934520793 0.679412295 1.587595011 1.73021484 0.97899672 0.29691986 1.506276774 0.694894879 1 7.656302605 -6.288403728 24.72370741 0.900616651 1.183674674 0.190152759 0.387575503 1135.985679 1041586.686 0.060423024 0.092313315 5.15E-07 6.288403728 0.283058023 STGVSFWTQDSDENEQEQQS(ph)DTEEGSNKK ddPTM_HeLa_CUDC101_4h_R1 1 STGVSFWTQDSDENEQEQQSDTEEGSNKK 29 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIM2;H0YIS3;H0YIL7 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 STGVSFWTQDSDENEQEQQS(0.956)DT(0.042)EEGS(0.001)NKK 97.542 1.25E-08 11952000 2473.5 2540.1 2405.6 1818.8 2244.8 2242.4 2028.5 2353.4 2401.3 2582.4 TRUE FALSE FALSE 2183.56008 2618.35747 2535.654013 1892.978526 2079.205576 2199.629956 2106.739925 2621.301543 2302.317398 2567.03977 0.850614044 1.019991003 0.98777356 0.737416906 0.809962355 0.856874125 0.820688463 1.021137878 0.896876404 1 11.32588993 -6.288043059 24.98912085 0.939871305 0.845875754 0.274657809 0.081651672 894.5941782 840299.9286 0.013750733 0.021008696 5.15E-07 6.288043059 -0.093995551 INSSGES(ph)GDESDEFLQSR ddPTM_HeLa_CUDC101_4h_R1 1 INSSGESGDESDEFLQSR 18 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 INSS(0.001)GES(0.938)GDES(0.061)DEFLQSR 205.55 2.97E-18 14922000 1542 1727.2 1388.3 1276.4 1322.4 1549.4 1025.8 1250.6 1379.4 1622.6 TRUE FALSE FALSE 1361.249098 1780.412985 1463.355697 1328.457109 1224.849187 1519.847776 1065.36545 1392.963249 1322.540548 1612.948703 0.843950645 1.103824927 0.907254952 0.823620185 0.759385084 0.942279053 0.660507955 0.863612864 0.819952021 1 10.65548484 -6.28768961 4.076851687 0.940053892 0.804983165 0.284806639 0.099929283 0.210260002 8.075371521 0.014993286 0.02399669 5.16E-07 6.28768961 -0.135070726 GGGSGNPTTTIES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 GGGSGNPTTTIESPK 15 0 G3V0E6;O00592-2;O00592 G3V0E6 PODXL Podocalyxin 1 0 GGGSGNPTTTIES(1)PK 157.58 1.69E-07 0 1184.1 1176.7 1165.4 1370.1 1271.9 1370.9 1449.6 1164.6 1654.7 1435 TRUE FALSE FALSE 1045.301593 1212.952732 1228.405049 1425.9786 1178.074471 1344.752367 1505.511558 1297.173357 1586.492566 1426.464556 0.732791844 0.850320975 0.861153573 0.999659328 0.825870132 0.942716986 1.055414627 0.909362487 1.112185058 1 10.47822818 -6.287377622 23.61795509 0.867613579 0.94572625 0 0.112470542 692.8840158 630901.0647 0.01736326 0.026530408 5.16E-07 6.287377622 0.07811267 GLMAGGRPEGQY(ph)SEDEDTDTDEYKEAK ddPTM_HeLa_CUDC101_4h_R1 1 GLMAGGRPEGQYSEDEDTDTDEYKEAK 27 2 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;H0YC88 H0YE35 RIC8A Synembryn-A 1 0 GLMAGGRPEGQY(0.713)S(0.266)EDEDT(0.019)DT(0.001)DEYKEAK 53.355 0.0069443 24107000 1845.4 2222 1739.7 1505.8 1725.6 1852.8 1903.7 1203.6 2077.4 1803.2 TRUE FALSE FALSE 1629.085009 2290.457186 1833.753444 1567.213033 1598.305926 1817.460927 1977.126347 1340.612959 1991.768693 1792.474486 0.908846972 1.277818571 1.023029035 0.874329339 0.891675691 1.013939635 1.103015057 0.747911878 1.111183846 1 10.80773687 -6.287015647 24.37499071 0.989536517 0.938958037 0.094678088 0.134571441 1863.25305 1775734.543 0.020553671 0.031404177 5.16E-07 6.287015647 -0.05057848 ES(ph)PGSSEFFQEAVSHGK ddPTM_HeLa_CUDC101_4h_R1 1 ESPGSSEFFQEAVSHGK 17 0 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 ES(0.995)PGS(0.003)S(0.003)EFFQEAVSHGK 144.4 0.00011045 12209000 4575.2 3099 2962.7 2783.9 2974.3 2714.5 2362.2 2234 3296.3 3132.8 TRUE FALSE FALSE 4038.901992 3194.476517 3122.872524 2897.439475 2754.891815 2662.725435 2453.310845 2488.30953 3160.425119 3114.165966 1.296945004 1.025788783 1.002795791 0.930406249 0.884632304 0.855036457 0.787790655 0.799029197 1.014854427 1 11.60463012 -6.286448479 1.197414932 1.136997449 0.820857623 0.63577148 0.084801897 0.239146366 0.676901525 0.020040244 0.039162441 5.17E-07 6.286448479 -0.316139826 TPTVPDS(ph)PGYMGPTR ddPTM_HeLa_CUDC101_4h_R1 3 TPTVPDSPGYMGPTR 15 0 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 T(0.001)PT(0.005)VPDS(0.993)PGYMGPTR;TPTVPDS(1)PGYMGPTR;T(0.002)PT(0.001)VPDS(0.989)PGY(0.008)MGPTR ;; 236.31 2.53E-43 40535500 3919.8 3275.72 3294.59 3969.1 4473.6 3561.02 3632.99 3551.67 3319.3 3538.97 TRUE FALSE FALSE 3460.326986 3376.641051 3472.705501 4130.977054 4143.591441 3493.099477 3773.115641 3955.977756 3182.477049 3517.920049 0.983628661 0.959840191 0.987147363 1.174266895 1.177852647 0.992944532 1.072541612 1.124521792 0.90464735 1 11.78050698 -6.286397457 23.98419445 0.988775415 1.103873398 0.595913714 0.056755032 261.1771758 250985.2015 0.007916334 0.012096498 5.17E-07 6.286397457 0.115097983 SSS(ph)DMDLQKK ddPTM_HeLa_CUDC101_4h_R1 2 SSSDMDLQKK 10 1 A0A0U1RQE4;A0A494C1M0;Q5HYK7-3;Q5HYK7-2;Q5HYK7 A0A0U1RQE4 SH3D19 SH3 domain-containing protein 19 1 0 S(0.003)S(0.046)S(0.951)DMDLQKK;S(0.018)S(0.068)S(0.914)DMDLQKK ; 92.906 0.012858 79583000 8623.2 9125.7 9528.4 11029.2 14103.5 13772.1 13307.4 8154.6 10807.6 10348.7 TRUE FALSE FALSE 7612.401568 9406.852 10043.53413 11479.01845 13063.1129 13509.42014 13820.67088 9082.886702 10362.10615 10287.14547 0.739991632 0.914427819 0.976318859 1.115860418 1.269848175 1.313233119 1.343489398 0.882935575 1.00728683 1 13.32855509 -6.285782881 1.994528371 0.877240712 1.218894251 0.460714071 0.139305285 0.197005582 1.529096563 0.023687594 0.041015535 5.18E-07 6.285782881 0.341653538 EENPES(ph)DGEPVVEDGTSVK ddPTM_HeLa_CUDC101_4h_R1 1 EENPESDGEPVVEDGTSVK 19 0 Q13439-3;Q13439-4;Q13439;Q13439-5;E7EVX2;H0Y6I0;A0A087WTW2 Q13439-3 GOLGA4 Golgin subfamily A member 4 1 0 EENPES(1)DGEPVVEDGTSVK 285.76 3.14E-104 11069000 4823.5 3546.4 2969.9 3207.5 3025.6 2955.1 2583.3 2094.8 4036.2 3792.7 TRUE FALSE FALSE 4258.096642 3655.66038 3130.461777 3338.315714 2802.407516 2898.736391 2682.938746 2333.263565 3869.826128 3770.140852 1.129426409 0.969634962 0.830330192 0.885461802 0.743316397 0.768866869 0.711628253 0.61887968 1.02644073 1 11.88040271 -6.285488384 0.893957187 1.06133763 0.693524362 0.84926256 0.059493369 0.166366445 0.263071762 0.013513659 0.029686353 5.18E-07 6.285488384 -0.367813267 MFIFSEEKR ddPTM_HeLa_CUDC101_4h_R1 1 MFIFSEEKR 9 1 E9PLT2 E9PLT2 UBTF 0 0 85.161 0.037115 51428000 2989.1 2753 2305.4 2492.6 3142 2682.3 2450.4 2830.4 2613.2 2615.9 FALSE FALSE TRUE 2638.722229 2837.816667 2430.036897 2594.259002 2910.22092 2631.139597 2544.912749 3152.601295 2505.48279 2600.34051 1.014760266 1.091325023 0.934507188 0.997661265 1.119169166 1.011844251 0.978684422 1.21238018 0.963521039 1 11.34448484 -4.255159984 24.6040908 1.01366276 1.212380291 0.565803112 0.052548591 298.3036919 1168780.109 0.006561617 0.081978461 5.56E-05 4.255159984 0.198717531 MFLYADNEDR ddPTM_HeLa_CUDC101_4h_R1 1 MFLYADNEDR 10 0 Q5TGM0;A0A087WY55;Q9NP79-2;Q9NP79 Q5TGM0 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog 0 0 175.91 8.97E-07 8148500 1813.1 1474.9 1199.8 1379.4 1581.6 1502.2 1354.8 1225.2 1566.1 1332.6 FALSE FALSE TRUE 1600.571166 1520.339921 1264.664817 1435.657894 1464.928519 1473.548038 1407.05509 1364.671816 1501.544695 1324.673636 1.208275852 1.14770905 0.954699167 1.083782341 1.105878821 1.112385721 1.06219 1.030194743 1.13352048 1 10.37142125 S(ph)YDEGLDDYREDAK ddPTM_HeLa_CUDC101_4h_R1 1 SYDEGLDDYREDAK 14 1 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 S(0.994)Y(0.006)DEGLDDYREDAK 77.24 0.0032871 0 1720.6 1222.6 1466.4 2020.6 1852.8 1826.7 1680.3 1980.5 1639.8 1748.5 TRUE FALSE FALSE 1518.913876 1260.266857 1545.67802 2103.008802 1716.122635 1791.858741 1745.109734 2205.952115 1572.20675 1738.099844 0.873893339 0.725083119 0.889291846 1.209947063 0.987355612 1.030929694 1.004033076 1.269174565 0.904554911 1 10.76329524 -6.284749164 24.87465055 0.915870178 1.084813254 0.500215305 0.107074027 639.6537791 682594.5558 0.01769496 0.027039343 5.19E-07 6.284749164 0.168943075 SS(ph)PAFGDR ddPTM_HeLa_CUDC101_4h_R1 1 SSPAFGDR 8 0 P13716;P13716-2 P13716 ALAD Delta-aminolevulinic acid dehydratase 1 0 S(0.226)S(0.774)PAFGDR 81.525 0.040515 9216200 2138.3 1882.4 1688.6 1659.9 1653.6 1785.4 1635.7 1405.4 1960.4 1838.8 TRUE FALSE FALSE 1887.651715 1940.394513 1779.890824 1727.597897 1531.617222 1751.34647 1698.789497 1565.385055 1879.591482 1827.862736 1.032709775 1.061564676 0.973755189 0.945146407 0.837927921 0.958138943 0.929385705 0.856401865 1.028300126 1 10.83594202 -6.284664768 2.488309345 1.019004578 0.902515596 0.714509639 0.037324456 0.125151983 1.52473846 0.005767464 0.009688143 5.19E-07 6.284664768 -0.116488981 KLDPAQSAS(ph)RENLLEEQGSIALR ddPTM_HeLa_CUDC101_4h_R1 1 KLDPAQSASRENLLEEQGSIALR 23 2 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 KLDPAQS(0.282)AS(0.718)RENLLEEQGSIALR 50.873 0.016461 29182000 1192.3 1205 1102.8 1246.9 1346.7 1268.6 1315 1176.2 1259.9 1229.7 TRUE FALSE FALSE 1052.540401 1242.124622 1162.420704 1297.753972 1247.356624 1244.403569 1365.71999 1310.093854 1207.966389 1222.38569 0.861054257 1.016147876 0.9509443 1.061656712 1.020428032 1.018012219 1.117257836 1.071751629 0.988203968 1 10.25548384 -6.284532963 1.193673765 0.936902049 1.066490813 0.43837514 0.049959243 0.308571083 0.867995482 0.01057479 0.02070932 5.19E-07 6.284532963 0.129588764 MFVLDEADEMLSR ddPTM_HeLa_CUDC101_4h_R1 4 MFVLDEADEMLSR 13 0 P60842;P60842-2;J3KT12;J3QS69;J3QL43;J3KTB5;J3KSZ0;J3QR64;Q14240-2;Q14240;E7EQG2;J3QLN6;J3KTN0 P60842 EIF4A1;EIF4A2 "Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed" 0 0 ;;; ;;; 313.3 1.00E-142 214407300 6011.57 5350.78 4950.09 4534 5392.63 5219.62 5354.07 5068.53 5639.53 5475.89 FALSE FALSE TRUE 5306.902878 5515.63119 5217.706839 4718.916118 4994.826429 5120.064445 5560.578273 5645.510967 5407.066186 5443.319163 0.974938768 1.013284547 0.958552435 0.866918874 0.917606754 0.94061441 1.02154184 1.037144948 0.993339914 1 12.41027091 -6.623195906 8.300533511 0.989662498 0.952910474 0.13380691 0.046362909 0.443089163 32.92820458 0.00789943 0.011177266 2.38E-07 6.623195906 -0.036752024 GGDDYS(ph)EDEGDSSVSR ddPTM_HeLa_CUDC101_4h_R1 4 GGDDYSEDEGDSSVSR 16 0 A6NDA1;Q99871-3;Q99871;Q99871-2 A6NDA1 HAUS7 HAUS augmin-like complex subunit 7 1 0 GGDDYS(1)EDEGDSSVSR;GGDDYS(1)EDEGDSSVSR;GGDDYS(1)EDEGDSSVSR;GGDDYS(1)EDEGDSSVSR ;;; 257.37 9.28E-70 56456000 6687.8 5818.7 5375.96 5089.56 5756.47 5093.26 5235.12 5143.35 5831.6 5466.8 TRUE FALSE FALSE 5903.866222 5997.96725 5666.600659 5297.134256 5331.826677 4996.114551 5437.040332 5728.848174 5591.21898 5434.28323 1.08641121 1.103727391 1.042750335 0.97476227 0.981146262 0.919369554 1.000507353 1.05420493 1.028878831 1 12.40787404 -6.284490085 8.116409566 1.047735563 0.982821362 0.392586064 0.040976388 0.23850603 74.01925344 0.007551045 0.011697017 5.19E-07 6.284490085 -0.064914201 LGRET(ph)EEQDSDSAEQGDPAGEGK ddPTM_HeLa_CUDC101_4h_R1 1 LGRETEEQDSDSAEQGDPAGEGK 23 1 H0Y626;O95361 H0Y626 TRIM16 Tripartite motif-containing protein 16 1 0 LGRET(0.764)EEQDS(0.118)DS(0.118)AEQGDPAGEGK 56.021 0.002226 0 1258.8 1543.3 1769.3 1608.5 1968.8 1793.4 1967.3 2068.4 1714.8 1365.6 TRUE FALSE FALSE 1111.245372 1590.847244 1864.95371 1674.101583 1823.565546 1759.193883 2043.17942 2303.858295 1644.115218 1357.47735 0.818610618 1.171914392 1.37383781 1.233244578 1.343348783 1.295928718 1.505129658 1.697161499 1.211154807 1 10.40671241 -6.284262598 0.652304128 0.910165763 1.537397347 0.550769599 0.156532013 0.295687762 0.244699862 0.033021858 0.084501133 5.20E-07 6.284262598 0.627231584 MGAGLGHGMDR ddPTM_HeLa_CUDC101_4h_R1 2 MGAGLGHGMDR 11 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2T0 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 0 ; ; 140.78 0.0012682 17366200 7267.2 6529.9 6351.6 6975.5 6891.1 6052.6 6396.8 6568.5 7009 5933.2 FALSE FALSE TRUE 6415.349832 6731.078479 6694.986709 7259.991041 6382.757282 5937.156739 6643.526719 7316.231489 6720.086053 5897.909063 1.087732918 1.141265219 1.135145801 1.230943198 1.082206798 1.006654507 1.126420677 1.240478856 1.139401436 1 12.52598786 -8.272448867 0.705888467 1.006967036 1.134021242 0 0.075927684 0.505884186 0.545566479 0.029086466 0.016350852 5.34E-09 8.272448867 0.127054206 (ac)S(ph)DNGELEDKPPAPPVR ddPTM_HeLa_CUDC101_4h_R1 4 SDNGELEDKPPAPPVR 16 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 S(1)DNGELEDKPPAPPVR;S(1)DNGELEDKPPAPPVR;S(1)DNGELEDKPPAPPVR;S(1)DNGELEDKPPAPPVR ;;; 63.091 0.0040781 298080600 7679.34 6587.43 6537.58 5538.24 6752.64 6516.55 6087.35 5548.85 7039.52 6745.48 TRUE FALSE FALSE 6779.179406 6790.38091 6891.02135 5764.113366 6254.5112 6392.257666 6322.141129 6180.508655 6749.348006 6705.357585 1.011009379 1.012679909 1.027688869 0.859628035 0.93276326 0.953306007 0.942849214 0.921726929 1.006560488 1 12.71109856 -6.283333431 24.99795346 1.007544435 0.92554104 0.768802838 0.024461738 300.1747281 342729.4316 0.003718699 0.005683373 5.21E-07 6.283333431 -0.082003395 GS(ph)GFSLDVIDGPISQR ddPTM_HeLa_CUDC101_4h_R1 1 GSGFSLDVIDGPISQR 16 0 O43166-3;O43166-2;O43166 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 GS(0.795)GFS(0.205)LDVIDGPISQR 262.24 5.15E-70 10889000 1276.5 962.25 1045 704.18 843.66 825.85 1087.2 656.62 775.08 1136 TRUE FALSE FALSE 1126.870605 991.895782 1101.495861 732.8995041 781.4248826 810.0982872 1129.133668 731.3669667 743.1308743 1129.243021 0.997899109 0.878372293 0.97542853 0.649018405 0.691990004 0.717381708 0.999903162 0.647661268 0.658078784 1 10.14114028 -6.283226667 21.00785073 0.986408265 0.751507768 0.120411079 0.144084956 55.77405543 53778.61103 0.015073399 0.023051542 5.21E-07 6.283226667 -0.234900497 GSS(ph)PTPPCS(ph)PVQPSK ddPTM_HeLa_CUDC101_4h_R1 1 GSSPTPPCSPVQPSK 15 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 2 0 GS(0.091)S(0.901)PT(0.178)PPCS(0.829)PVQPS(0.001)K 130.47 0.0064569 17913000 5301.7 4634.2 4503.9 5557.2 5343.9 5196.5 5206.6 5120.2 4758.9 5374.1 TRUE FALSE FALSE 4680.242763 4776.974209 4747.394458 5783.846636 4949.691144 5097.38542 5407.420306 5703.062871 4562.736128 5342.134614 0.876099743 0.894207008 0.888669942 1.082684555 0.926538079 0.954185132 1.0122209 1.067562554 0.854103548 1 12.38320061 -6.283069851 24.80451079 0.932105302 1.001251002 0.394102256 0.060083031 888.2866021 1018630.852 0.010211874 0.015610116 5.21E-07 6.283069851 0.0691457 TTTAAAVASTGPSSRS(ph)PSTLLPK ddPTM_HeLa_CUDC101_4h_R1 2 TTTAAAVASTGPSSRSPSTLLPK 23 1 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;P27816-4;H0Y2V1;H7C4C5;B5MEG9;F8W9U4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 TTTAAAVASTGPS(0.003)S(0.015)RS(0.978)PS(0.002)T(0.002)LLPK;TTTAAAVAS(0.003)T(0.007)GPS(0.339)S(0.098)RS(0.51)PS(0.039)T(0.004)LLPK ; 128.07 9.86E-08 659850000 3599.8 4264.1 4060.8 4237.2 6082.9 4350 4508.7 4732.9 4319.6 4742 TRUE FALSE FALSE 3177.836901 4395.471867 4280.339131 4410.011331 5634.176586 4267.030998 4682.602069 5271.674205 4141.54426 4713.794373 0.674156879 0.932470006 0.908045365 0.935554456 1.195252941 0.905222133 0.993382761 1.118350481 0.87860096 1 12.20267311 -6.283038426 1.885019725 0.849393596 1.037585811 0.34547632 0.107990031 0.35336619 2.449388123 0.022700369 0.039725981 5.21E-07 6.283038426 0.188192215 MGESDDSILR ddPTM_HeLa_CUDC101_4h_R1 1 MGESDDSILR 10 0 Q8WVC2;P63220 Q8WVC2 RPS21 40S ribosomal protein S21 0 0 126.24 0.016127 8146700 1479.3 1349.5 1271.9 1202.1 1230.1 973.22 1034.5 1173.2 1156.4 1514.5 FALSE FALSE TRUE 1305.898696 1391.076495 1340.662761 1251.126834 1139.357974 954.65745 1074.401012 1306.752346 1108.732703 1505.491687 0.867423386 0.924001446 0.890514888 0.831042008 0.756801239 0.63411672 0.713654563 0.86799041 0.736458867 1 10.55601903 -6.112924909 1.502792557 0.93532179 0.730926168 0.290738301 0.088187356 0.196366682 0.873030214 0.011769171 0.023481913 7.71E-07 6.112924909 -0.204395621 DS(ph)GDENEPIQER ddPTM_HeLa_CUDC101_4h_R1 1 DSGDENEPIQER 12 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 DS(1)GDENEPIQER 101.38 0.010478 2760900 759.74 520.78 636.79 350.78 602.2 438.15 506.09 486.13 564.45 594.37 TRUE FALSE FALSE 670.6844289 536.8246145 671.2167936 365.0863246 557.7769058 429.7930188 525.6100608 541.4690742 541.1831321 590.8346608 1.1351474 0.908586869 1.136048438 0.617916227 0.944049059 0.727433658 0.889606003 0.916447714 0.915963751 1 9.206610653 -6.282900985 24.99645274 1.05625332 0.824858127 0.405522996 0.116767486 462.8673682 539103.088 0.01610118 0.024608918 5.21E-07 6.282900985 -0.231395193 MGGEEK(ac)PIGAGEEK ddPTM_HeLa_CUDC101_4h_R1 2 MGGEEKPIGAGEEK 14 1 P26639;P26639-2;D6RJ97;D6RHV7;D6RCS6;D6RCA5;D6R9F8;D6RDJ6 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 1 ; MGGEEK(1)PIGAGEEK;MGGEEK(1)PIGAGEEK 180.84 1.57E-08 5433200 5597.1 3102.1 2594.9 2341.9 5116.9 4646.2 4762.4 4707.7 4697.6 3821.9 FALSE TRUE FALSE 4941.016423 3197.672024 2735.188143 2437.412805 4739.436481 4557.581476 4946.087363 5243.605539 4503.96294 3799.167169 1.300552517 0.841677105 0.719944141 0.641565032 1.247493535 1.199626464 1.301887267 1.380198687 1.185513229 1 11.89146748 -5.552815477 24.99833032 1.049403679 1.282845989 0.331494806 0.204654381 277.8462984 232011.6219 0.036220677 0.07244206 2.80E-06 5.552815477 0.23344231 MGGEEKPIGAGEEK ddPTM_HeLa_CUDC101_4h_R1 1 MGGEEKPIGAGEEK 14 1 P26639;P26639-2;D6RJ97;D6RHV7;D6RCS6;D6RCA5;D6R9F8;D6RDJ6 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 86.803 0.022549 6981600 972.88 940.96 1124.2 1088.4 1173.8 1032.1 1090.9 1125 1038.3 1167.9 FALSE FALSE TRUE 858.8404812 969.9498623 1184.977653 1132.789656 1087.211113 1012.414412 1132.976378 1253.065453 995.5008345 1160.953279 0.739771787 0.835477086 1.020693661 0.975740951 0.936481366 0.872054397 0.975901786 1.079341844 0.8574857 1 10.1810942 -6.766940289 24.92621855 0.870558084 0.970037297 0.351523417 0.07782607 183.6098796 831989.7093 0.017721379 0.023660432 1.71E-07 6.766940289 0.099479213 DPSSNDINGGMEPT(ph)PSTVSTPSPSADLLGLR ddPTM_HeLa_CUDC101_4h_R1 1 DPSSNDINGGMEPTPSTVSTPSPSADLLGLR 31 0 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 1 0 DPS(0.008)S(0.008)NDINGGMEPT(0.283)PS(0.283)T(0.283)VS(0.046)T(0.046)PS(0.037)PS(0.007)ADLLGLR 43.801 0.03185 3871200 498 292.13 384.03 498.65 499.99 516.16 334.77 496.72 410.22 455.73 TRUE FALSE FALSE 439.6251949 301.130179 404.7918234 518.9871023 463.1067338 506.315108 347.682191 553.264597 393.310558 453.0192977 0.970433704 0.664718215 0.893542119 1.14561809 1.022267122 1.117645784 0.767477661 1.221282625 0.868198242 1 8.823428697 -6.282290366 24.91113031 0.950166045 1.040570262 0.188718698 0.147934742 1586.398279 1895300.557 0.022406745 0.034248779 5.22E-07 6.282290366 0.090404217 MGK(ac)RLQIMTK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 MGKRLQIMTKR 11 3 Q9BR77;F5H0W5;Q9BR77-2 Q9BR77 CCDC77 Coiled-coil domain-containing protein 77 0 2 MGK(1)RLQIMTK(1)R 45.077 0.040346 0 1467.3 2467.7 1867.1 6028.6 5999.8 7099.9 5313 3283.1 154.71 106.06 FALSE TRUE FALSE 1295.305318 2543.726912 1968.041074 6274.472366 5557.206707 6964.481237 5517.92419 3656.834833 148.3327883 105.4291504 12.28602633 24.12735854 18.66695374 59.5136387 52.71034326 66.05840235 52.3377469 34.68523477 1.40694284 1 6.720130007 -6.604592968 1.221674641 6.008721395 54.30939965 0.812078998 9.971665965 0.128058471 0.383292921 1.799232809 2.943398366 2.49E-07 6.604592968 48.30067825 LGAS(ph)NSPGQPNSVK ddPTM_HeLa_CUDC101_4h_R1 1 LGASNSPGQPNSVK 14 0 P49756 P49756 RBM25 RNA-binding protein 25 1 0 LGAS(0.63)NS(0.37)PGQPNSVK 188.39 3.49E-11 98063000 4692.4 4414.1 3786.2 3217.2 3858.7 3700.8 3503.4 3359.9 3158.7 3587.3 TRUE FALSE FALSE 4142.363985 4550.093189 3990.893425 3348.411322 3574.051389 3630.213406 3638.527312 3742.377435 3028.497049 3565.96258 1.16163978 1.27597895 1.119163013 0.938992277 1.002268338 1.018017807 1.020349269 1.049471875 0.849278976 1 11.80007585 -6.281903007 24.66813161 1.099339113 1.007107445 0.098743666 0.107063789 877.8451213 1058207.359 0.014393594 0.022002846 5.23E-07 6.281903007 -0.092231667 (ac)SQSGAVSCCPGATNGS(ph)LGR ddPTM_HeLa_CUDC101_4h_R1 1 SQSGAVSCCPGATNGSLGR 19 0 A0A3B3ISQ4;Q9H6S3;Q9H6S3-3;E9PNY4;E9PM34;E9PN68;E9PLN2;E9PNT0;E9PLH1 A0A3B3ISQ4 EPS8L2 Epidermal growth factor receptor kinase substrate 8-like protein 2 1 0 SQSGAVS(0.004)CCPGAT(0.09)NGS(0.906)LGR 93.812 5.72E-05 3122900 2035.4 2645.1 2376 3064 3827.6 3613.8 3724.2 2854.1 4229.8 2565.6 TRUE FALSE FALSE 1796.813497 2726.592396 2504.453747 3188.963164 3545.245574 3544.872786 3867.843642 3178.999207 4055.445854 2550.339697 0.704538889 1.069109499 0.982007907 1.250407217 1.390107199 1.389961028 1.516599395 1.246500304 1.590159091 1 11.31647371 -6.281686887 1.403098093 0.867534741 1.404243602 0.063283119 0.251932657 0.141935449 0.548632495 0.02210939 0.041294477 5.23E-07 6.281686887 0.536708861 RGGGSGGGEES(ph)EGEEVDED ddPTM_HeLa_CUDC101_4h_R1 3 RGGGSGGGEESEGEEVDED 19 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 RGGGSGGGEES(1)EGEEVDED;RGGGS(0.001)GGGEES(0.999)EGEEVDED;RGGGSGGGEES(1)EGEEVDED ;; 144.15 0.00011248 333659000 10743.4 9510.2 9221.7 8568.3 9636.9 9274.4 8528.6 9249.2 9560.1 9995.8 TRUE FALSE FALSE 9484.074938 9803.19799 9720.252996 8917.752309 8926.005086 9097.506272 8857.550959 10302.09154 9166.028632 9936.344537 0.954483301 0.986600047 0.978252411 0.897488234 0.898318799 0.915578786 0.891429532 1.03680901 0.92247492 1 13.27849948 -6.281249864 22.98109395 0.978678572 0.923566682 0.150728601 0.044158539 265.1366389 307570.4169 0.006136274 0.009384456 5.23E-07 6.281249864 -0.05511189 T(ph)PASKSPSEGQTATTSPR ddPTM_HeLa_CUDC101_4h_R1 1 TPASKSPSEGQTATTSPR 18 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 T(0.507)PAS(0.405)KS(0.082)PS(0.005)EGQT(0.001)ATTSPR 70.784 0.021415 40760000 1669.3 1377.5 1417.7 1155 1471.9 1227.3 1243.8 1335.2 1166.7 1499.8 TRUE FALSE FALSE 1473.627184 1419.939142 1494.34515 1202.105892 1363.320869 1203.891297 1291.773783 1487.193771 1118.608132 1490.879123 0.988428345 0.952417349 1.002324821 0.806306745 0.914440915 0.807504297 0.866451051 0.997528068 0.750301024 1 10.54194758 -6.280995797 24.74541358 0.991098961 0.875838304 0 0.092511163 388.3364214 491374.6124 0.0075699 0.011573234 5.24E-07 6.280995797 -0.115260657 VEFMDDTS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 VEFMDDTSR 9 0 P62857 P62857 RPS28 40S ribosomal protein S28 1 0 VEFMDDT(0.03)S(0.97)R 84.687 0.036164 4173400 4201.5 3743.8 3455.4 3521.8 4326.7 3854.3 3332.4 3338 3514.9 3888.3 TRUE FALSE FALSE 3709.006539 3859.142041 3642.209376 3665.434227 4007.527961 3780.785649 3460.931784 3717.984427 3370.014334 3865.172219 0.959596709 0.998439868 0.942314901 0.94832365 1.036830375 0.978167449 0.895414638 0.961919474 0.871892413 1 11.91631698 -6.278279966 0.005717617 1.931988061 2.87E-08 0 0.051335886 9839.772165 22.83907163 3802.938926 3913.846962 5.27E-07 6.278279966 -1.931988032 RPDYAPMES(ph)S(ph)DEEDEEFQFIKK ddPTM_HeLa_CUDC101_4h_R1 3 RPDYAPMESSDEEDEEFQFIKK 22 2 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 0 RPDY(0.054)APMES(0.973)S(0.973)DEEDEEFQFIKK;RPDY(0.121)APMES(0.94)S(0.94)DEEDEEFQFIKK;RPDY(0.357)APMES(0.822)S(0.822)DEEDEEFQFIKK ;; 84.249 0.0023777 49760000 8253.6 8215.7 7198 8449.5 9480.3 9249 8005.4 8512.9 8887.2 7969.8 TRUE FALSE FALSE 7286.12552 8468.815979 7587.145653 8794.107132 8780.957156 9072.590735 8314.17096 9481.974126 8520.865854 7922.395275 0.919687199 1.068971654 0.9576833 1.110031351 1.108371503 1.145182791 1.049451671 1.196856985 1.075541621 1 12.95172097 -6.278065043 1.400261575 0.966249333 1.126263477 0.399367188 0.06244328 0.189819382 0.730745448 0.008799039 0.016473126 5.27E-07 6.278065043 0.160014144 MGSDEFDISPR ddPTM_HeLa_CUDC101_4h_R1 1 MGSDEFDISPR 11 0 Q8IWI9;Q8IWI9-3 Q8IWI9 MGA MAX gene-associated protein 0 0 112.41 0.030704 102380000 1139.4 830.81 961.26 954.4 1298.1 965.48 822.94 978.93 962.05 868.06 FALSE FALSE TRUE 1005.841259 856.4062713 1013.228623 993.3245573 1202.341749 947.0650776 854.6810715 1090.367434 922.3938918 862.8967405 1.165656575 0.992478278 1.174217697 1.151151129 1.393378481 1.09754161 0.990478966 1.263612879 1.068950488 1 9.753044118 -10.33934033 0.337184829 0.853981018 1.165970636 0.150730565 0.113225293 7.8536159 0.655270441 1.000190866 0.045088474 4.58E-11 10.33934033 0.311989618 RMEDEGGFPVPQENGQPES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 RMEDEGGFPVPQENGQPESPR 21 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RMEDEGGFPVPQENGQPES(1)PR;RMEDEGGFPVPQENGQPES(1)PR;RMEDEGGFPVPQENGQPES(1)PR ;; 173.24 9.75E-10 28662100 5137.9 4744.9 4787 4097.1 4995 4461.3 4164.2 4851.8 5288.3 5157.9 TRUE FALSE FALSE 4535.643151 4891.084745 5045.7997 4264.197447 4626.528801 4376.208136 4324.814589 5404.1093 5070.314036 5127.220581 0.88462025 0.95394467 0.984119879 0.831678173 0.902346355 0.853524452 0.843500786 1.054003668 0.988901093 1 12.32396125 -6.277302266 24.86410306 0.947529608 0.891918433 0.177867957 0.066052975 1202.64596 1885071.679 0.010654455 0.016312712 5.28E-07 6.277302266 -0.055611175 S(ph)PPSTGSTYGSSQK ddPTM_HeLa_CUDC101_4h_R1 3 SPPSTGSTYGSSQK 14 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.982)PPS(0.012)T(0.006)GSTYGSSQK;S(0.976)PPS(0.012)T(0.012)GSTYGSSQK;S(0.891)PPS(0.083)T(0.025)GS(0.001)TYGSSQK ;; 171.21 2.04E-11 126983000 4280.71 3066.9 3417.61 2964.62 2427.67 3013.38 2371.64 2039.24 3451.5 4058.97 TRUE FALSE FALSE 3778.931663 3161.387554 3602.376334 3085.530018 2248.585621 2955.904797 2463.114949 2271.378839 3309.227709 4034.827066 0.936578347 0.78352492 0.892820504 0.764724229 0.557294175 0.732597643 0.610463574 0.562943294 0.820165934 1 11.97829113 -6.277277678 0.506122801 0.993033712 0.560004316 0.672691368 0.083550714 0.268401941 0.131334978 0.017497125 0.049895147 5.28E-07 6.277277678 -0.433029395 LGGLRPESPESLTS(ph)VSR ddPTM_HeLa_CUDC101_4h_R1 1 LGGLRPESPESLTSVSR 17 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 LGGLRPES(0.184)PES(0.107)LT(0.18)S(0.523)VS(0.006)R 67.846 0.016257 253230000 1661 1446.2 1468.9 1630.7 1693.5 1793.7 1392.7 1696 1848.6 1642.9 TRUE FALSE FALSE 1466.300098 1490.755708 1548.313177 1697.206994 1568.573879 1759.488161 1446.416906 1889.065785 1772.399926 1633.127958 0.897847649 0.912822355 0.948066053 1.039236997 0.960472124 1.077373119 0.885672735 1.156716334 1.085279275 1 10.67342212 -6.276448655 21.89023015 0.946744197 1.015662878 0.06456365 0.083531364 202.8765623 295884.5062 0.010770293 0.01651208 5.29E-07 6.276448655 0.068918681 MHDLNTDQENLVGTHDAPIR ddPTM_HeLa_CUDC101_4h_R1 3 MHDLNTDQENLVGTHDAPIR 20 0 J3QT28;O43684-2;O43684;J3QSX4 J3QT28 BUB3 Mitotic checkpoint protein BUB3 0 0 ;; ;; 63.443 0.0078443 96843000 4209.7 3805.4 3859.59 3966.5 4064.1 3217.72 3614.8 3138.83 3333.72 3994.26 FALSE FALSE TRUE 3716.245347 3922.639863 4068.25111 4128.271015 3764.29944 3156.347352 3754.224047 3496.14172 3196.302651 3970.501964 0.935963609 0.987945579 1.024618838 1.039735291 0.948066384 0.794949198 0.945528823 0.880528898 0.805012233 1 11.95510569 -5.509381093 24.58894097 0.980092205 0.879297085 0.238293791 0.070782039 329.755702 600721.6256 0.006784734 0.014577403 3.09E-06 5.509381093 -0.10079512 MHEDINEEWISDK ddPTM_HeLa_CUDC101_4h_R1 2 MHEDINEEWISDK 13 0 B4DJ81;P28331-3;P28331-4;P28331-5;P28331;P28331-2 B4DJ81 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" 0 0 ; ; 98.592 0.0097973 12584100 6302.2 4821.9 4211.6 5013 5372.2 4058.2 3995.8 3035.4 5063.7 5713.7 FALSE FALSE TRUE 5563.46567 4970.457024 4439.291835 5217.451808 4975.903509 3980.796596 4149.919345 3380.937666 4854.972143 5679.714658 0.979532601 0.875124425 0.781604729 0.918611607 0.876083361 0.700879681 0.730656308 0.595265409 0.854791558 1 12.47160274 -3.247563835 0.260849329 1.017645938 7.41E-13 0.651831658 0.071748333 4.288546981 0.147746848 0.031435513 1.538832708 0.000565505 3.247563835 -1.017645938 MINLSVPDTIDER ddPTM_HeLa_CUDC101_4h_R1 1 MINLSVPDTIDER 13 0 P13797;P13797-3;A0A0A0MSQ0;P13797-2;U3KQI3;Q5TBN3;P13796 P13797 PLS3;LCP1 Plastin-3;Plastin-2 0 0 129.74 0.0057724 8283500 1709.1 1063.7 845.18 1173.9 995.7 1295.9 1271.9 1075 1319.5 1431.5 FALSE FALSE TRUE 1508.761889 1096.471336 890.8729873 1221.776716 922.2491947 1271.182867 1320.957609 1197.373655 1265.109652 1422.985374 1.060279266 0.770542942 0.626059131 0.858601036 0.648108696 0.893321105 0.928300201 0.841451835 0.889053165 1 10.47470512 -7.260251646 24.96835274 1.028465212 0.794367111 0.391587171 0.102770498 55.80925255 1173216.259 0.016074579 0.019104391 5.49E-08 7.260251646 -0.234098101 LTKSIYNWT(ph)EEY(ph)GR ddPTM_HeLa_CUDC101_4h_R1 1 LTKSIYNWTEEYGR 14 1 Q9NX78 Q9NX78 TMEM260 Transmembrane protein 260 2 0 LTKSIYNWT(1)EEY(1)GR 85.176 0.0012036 0 2682.9 2814.8 2643.8 2136.9 2692.7 2596.5 2304.6 2191.8 2713.4 2916.3 TRUE FALSE FALSE 2368.414529 2901.520652 2786.731825 2224.052018 2494.064886 2546.976089 2393.489194 2441.305652 2601.552504 2898.953718 0.816989424 1.000885469 0.961288829 0.767191282 0.860332771 0.878584599 0.825638981 0.842133366 0.897410844 1 11.50131659 -6.275559194 24.71462716 0.922573136 0.838122182 0.427034703 0.057220052 797.3352075 1395614.428 0.011878514 0.018202696 5.30E-07 6.275559194 -0.084450954 MSDYS(ph)PNSTGSVQNTSR ddPTM_HeLa_CUDC101_4h_R1 2 MSDYSPNSTGSVQNTSR 17 0 H7C1W4;Q93075 H7C1W4 TATDN2 Putative deoxyribonuclease TATDN2 1 0 MS(0.007)DY(0.004)S(0.98)PNS(0.002)T(0.006)GS(0.001)VQNTSR;MSDYS(0.999)PNS(0.001)T(0.001)GSVQNTSR ; 208.07 1.82E-33 3930600 2710.8 2617 2512 2609 3181.2 2379.4 2380.11 2896.3 2762.4 2885 TRUE FALSE FALSE 2393.044133 2697.626668 2647.806318 2715.406297 2946.529214 2334.016909 2471.91164 3226.003085 2648.532703 2867.839892 0.83444133 0.940647585 0.923275503 0.946847244 1.027438534 0.813858862 0.861941996 1.124889536 0.923528789 1 11.48574877 -6.27519194 7.285679826 0.921623579 0.946026667 0.024047683 0.087903519 0.838032272 267.5106934 0.014874174 0.023322565 5.31E-07 6.27519194 0.024403088 S(ph)EHSLFQAK ddPTM_HeLa_CUDC101_4h_R1 1 SEHSLFQAK 9 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(0.989)EHS(0.011)LFQAK 89.266 0.019054 5957100 7436.9 6117.6 5638.3 5682.6 5835.3 6414.6 5349.3 4803.8 5389.6 5804.5 TRUE FALSE FALSE 6565.157856 6306.076005 5943.123553 5914.36099 5404.841545 6292.252192 5555.624293 5350.645174 5167.438407 5769.974576 1.137814001 1.092912269 1.03000862 1.025023752 0.936718433 1.09051645 0.96285074 0.927325607 0.895573861 1 12.49434925 -6.27440308 2.193199047 1.068431818 0.986514888 0 0.076495553 0.348162953 3.273351578 0.010537677 0.018071928 5.32E-07 6.27440308 -0.08191693 KQS(ph)PVPALPIVVQLMEMGFSR ddPTM_HeLa_CUDC101_4h_R1 2 KQSPVPALPIVVQLMEMGFSR 21 1 O95714 O95714 HERC2 E3 ubiquitin-protein ligase HERC2 1 0 KQS(1)PVPALPIVVQLMEMGFSR;KQS(1)PVPALPIVVQLMEMGFSR ; 101.53 9.76E-05 62861000 5885.3 4280.2 4409.1 3986 4455.5 4990.6 4279.7 3509.5 3846.6 3921.3 TRUE FALSE FALSE 5195.434056 4412.067889 4647.469283 4148.566309 4126.826642 4895.41262 4444.769463 3909.007294 3688.04152 3897.975933 1.332854318 1.131886898 1.192277572 1.064287307 1.058710139 1.255885799 1.140276271 1.002830023 0.946142712 1 11.92850947 -6.274386568 24.23746174 1.161267227 1.112268932 0 0.119210119 1809.182329 3386828.264 0.021086768 0.032359231 5.32E-07 6.274386568 -0.048998295 VLT(ph)PEEQLADK ddPTM_HeLa_CUDC101_4h_R1 4 VLTPEEQLADK 11 0 O75822-2;O75822;O75822-3 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 VLT(1)PEEQLADK;VLT(1)PEEQLADK;VLT(1)PEEQLADK;VLT(1)PEEQLADK ;;; 167.73 4.69E-05 171769000 23047.6 16798.5 16378.7 16337.6 14806 16060.1 14261 11983.9 17997.2 18303.5 TRUE FALSE FALSE 20345.99527 17316.04187 17264.18206 17003.91795 13713.79088 15753.78035 14811.05155 13348.09874 17255.3478 18194.62997 1.118241773 0.951711681 0.9488614 0.934556953 0.753727386 0.865847801 0.814034227 0.73362848 0.948375858 1 14.15122509 -6.274326137 1.062820742 1.053269956 0.792013924 0.674379045 0.063384139 0.173623622 0.388100595 0.011148122 0.022917947 5.32E-07 6.274326137 -0.261256032 GIPLATGDTS(ph)PEPELLPGAPLPPPK ddPTM_HeLa_CUDC101_4h_R1 2 GIPLATGDTSPEPELLPGAPLPPPK 25 0 O75821;K7EL20;K7ENA8;K7ER90;K7EL60 O75821 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 0 GIPLAT(0.01)GDT(0.168)S(0.822)PEPELLPGAPLPPPK;GIPLAT(0.006)GDT(0.145)S(0.849)PEPELLPGAPLPPPK ; 148.09 6.83E-11 258250000 10853.8 9571.4 9539.1 7711.8 8693.8 8606.5 8063.3 8874.3 8933.4 10691.6 TRUE FALSE FALSE 9581.534017 9866.283489 10054.8126 8026.320537 8052.475694 8442.345352 8374.304182 9884.514441 8565.161471 10628.00589 0.901536386 0.928328756 0.946067654 0.755204751 0.757665716 0.794348953 0.78794689 0.930044125 0.805904848 1 13.37558331 -6.273996027 23.74660318 0.949526667 0.800866273 0.351852199 0.068400831 195.1667258 369090.7812 0.008905113 0.01366797 5.32E-07 6.273996027 -0.148660394 MSPNETLFLES(ph)TNKIYK ddPTM_HeLa_CUDC101_4h_R1 1 MSPNETLFLESTNKIYK 17 1 Q9HB90 Q9HB90 RRAGC Ras-related GTP-binding protein C 1 0 MSPNETLFLES(0.838)T(0.162)NKIYK 65.855 0.019347 22385000 553.04 448.48 452.34 693.71 665.49 493.58 784.82 523.86 413.71 548.6 TRUE FALSE FALSE 488.2134896 462.2971372 476.7948687 722.0024923 616.3981285 484.1657839 815.0907703 583.4941049 396.6566987 545.3369028 0.89525115 0.847727588 0.874312496 1.323956784 1.130307018 0.887828756 1.494655443 1.069969961 0.727360823 1 9.091003975 -6.273936182 24.82594749 0.934735646 1.179608065 0.442851872 0.16724887 539.4729713 1071707.017 0.022820397 0.0350115 5.32E-07 6.273936182 0.244872419 MK(ac)FNPFVTSDR ddPTM_HeLa_CUDC101_4h_R1 1 MKFNPFVTSDR 11 1 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;Q9UNX3;P61254;E5RHH1;J3KSS0 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 0 1 MK(1)FNPFVTSDR 105.46 0.007551 744860 147.82 142.9 164.63 0 51.231 148.51 71.918 0 245.19 191.02 FALSE TRUE FALSE 130.4927637 147.3025796 173.5303958 0 47.4517912 145.6774192 74.69190135 0 235.0831644 189.8838045 0.687224295 0.775751149 0.913876758 0 0.249899097 0.767192439 0.393355829 0 1.23803694 1 7.568973051 -6.278885005 24.81492774 0.84578802 0.313432742 0.613467495 0.250025319 419.3983104 596557.6427 0.03625829 0.055465219 5.26E-07 6.278885005 -0.532355277 MK(ac)TPFGK ddPTM_HeLa_CUDC101_4h_R1 2 MKTPFGK 7 1 Q9Y657;A0A1W2PQU8;A0A1W2PRP6;A0A1W2PPL1;A0A1W2PPF7;A0A1W2PR54;Q5JUX0-2;Q5JUX0 Q9Y657 SPIN1;SPIN3 Spindlin-1;Spindlin-3 0 1 ; MK(1)TPFGK;MK(1)TPFGK 86.011 0.037904 1909840 1862.25 2207.1 1680.91 2241.5 2434.3 2367.2 2353 1909.13 1876.84 1759.9 FALSE TRUE FALSE 1643.959878 2275.098135 1771.785079 2332.918059 2254.726539 2322.049604 2443.755998 2126.457642 1799.475861 1749.432037 0.939710628 1.300478148 1.012777314 1.333528831 1.288833457 1.327316269 1.396885359 1.215513148 1.028605755 1 10.7726709 -6.73121081 0.956481094 0.970571787 1.322907865 0.595773759 0.102668511 0.202236151 0.369357647 0.019043384 0.030474496 1.86E-07 6.73121081 0.352336078 MKDTDSEEEIR ddPTM_HeLa_CUDC101_4h_R1 1 MKDTDSEEEIR 11 1 P0DP25;P0DP24;P0DP23;E7EMB3;G3V361;A0A590UJI2;Q96HY3;A0A590UJC0;G3V226 P0DP25 CALM2;CALM1 0 0 92.781 0.026158 49170000 5929.8 4484.4 5390.9 4546.2 4469.3 4190.9 4123.4 4724.7 4364.6 7152.6 FALSE FALSE TRUE 5234.717833 4622.559049 5682.348361 4731.613686 4139.608643 4110.965565 4282.440919 5262.54075 4184.689341 7110.056017 0.736241433 0.65014383 0.799198817 0.665481914 0.582218851 0.57819032 0.60230762 0.740154612 0.588559265 1 12.79564521 -8.948133017 0.333387688 1.109158236 0.614901013 0 0.142966814 0.802484303 0.141437379 0.151651259 0.033394262 1.13E-09 8.948133017 -0.494257223 MKDTDSEEEIREAFR ddPTM_HeLa_CUDC101_4h_R1 5 MKDTDSEEEIREAFR 15 2 P0DP25;P0DP24;P0DP23;E7EMB3;G3V361;A0A590UJI2;Q96HY3;A0A590UJC0;G3V226 P0DP25 CALM2;CALM1 0 0 ;;;; ;;;; 98.592 0.0030684 354536000 25870.5 24896.6 25067.4 24170.2 28672.5 25279.6 25347.9 27620.3 24590.8 27428.8 FALSE FALSE TRUE 22837.99921 25663.63474 26422.61947 25155.96523 26557.3868 24797.43375 26325.57699 30764.48331 23577.15682 27265.65228 0.837610594 0.941244115 0.969080776 0.922624736 0.974023527 0.90947517 0.965521629 1.12832376 0.864720073 1 14.73479705 -4.271201495 3.003809265 0.929186954 1.158571784 0.623140891 0.04668699 0.241705087 3.217477049 0.008482526 0.130711777 5.36E-05 4.271201495 0.229384831 MKEIAEAYLGK ddPTM_HeLa_CUDC101_4h_R1 1 MKEIAEAYLGK 11 1 P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 128.36 0.0030276 10629000 4157.2 4014 3684.3 3928.5 4557.8 4159.7 3809.9 4090.4 4038.3 3818.5 FALSE FALSE TRUE 3669.899318 4137.666582 3883.484402 4088.72121 4221.580174 4080.360653 3956.849119 4556.034602 3871.839565 3795.787392 0.966834793 1.090068056 1.023103773 1.0771734 1.112175087 1.074970811 1.042431704 1.20028709 1.020035941 1 11.89018347 -6.708795356 0.933532603 0.984358879 1.102259987 0.440928048 0.046914147 0.285383007 0.496872399 0.008827313 0.014399065 1.96E-07 6.708795356 0.117901108 SASS(ph)SWLEGTSTQAK ddPTM_HeLa_CUDC101_4h_R1 2 SASSSWLEGTSTQAK 15 0 K7EL81;Q9BZL4-5;Q9BZL4-2;Q9BZL4-3;Q9BZL4-4;Q9BZL4 K7EL81 PPP1R12C Protein phosphatase 1 regulatory subunit 12C 1 0 S(0.04)AS(0.205)S(0.377)S(0.377)WLEGTSTQAK;SAS(0.44)S(0.506)S(0.055)WLEGTSTQAK ; 169.02 8.31E-07 36086000 3855.3 3812.8 3435.3 4192.4 4843.5 5372.4 3758.7 3062.5 3469.6 3704.7 TRUE FALSE FALSE 3403.387578 3930.267849 3621.022709 4363.384193 4486.204655 5269.930421 3903.674318 3411.122621 3326.581619 3682.66428 0.924164496 1.067234901 0.983261692 1.184844412 1.218195392 1.431010274 1.060013626 0.926264889 0.903308411 1 11.84653417 -6.273856891 6.979707752 0.97375719 1.17633464 0.355407224 0.12636499 0.128314674 35.97007169 0.019595495 0.030811515 5.32E-07 6.273856891 0.202577449 MKPLVVFVLGGPGAGK ddPTM_HeLa_CUDC101_4h_R1 2 MKPLVVFVLGGPGAGK 16 1 P30085-2;P30085 P30085-2 CMPK1 UMP-CMP kinase 0 0 ; ; 192.65 1.08E-12 1583520 1478.73 1269.94 1210.13 1423.57 1551.56 1310.16 1242.76 977.3 1219.92 1343.75 FALSE FALSE TRUE 1305.395511 1309.065346 1275.553288 1481.629338 1437.10451 1285.170881 1290.693669 1088.551882 1169.634381 1335.757315 0.97726997 0.980017351 0.954928918 1.109205483 1.075872461 0.962129023 0.966263598 0.814932375 0.875633895 1 10.3834422 -4.148931277 1.897323404 0.999364626 0.718507296 0.425171296 0.061063848 0.664917855 1.930049533 0.007001176 0.360621751 7.10E-05 4.148931277 -0.280857331 KKAEPSEVDMNS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 KKAEPSEVDMNSPK 14 2 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 KKAEPS(0.001)EVDMNS(0.999)PK 53.779 0.03762 336610000 10142 10388 11680 10493 9325.4 8697.4 6988.2 2604.7 9678.7 9683.5 TRUE FALSE FALSE 8953.170134 10708.04197 12311.45613 10920.94989 8637.483821 8531.511586 7257.737215 2901.208519 9279.739889 9625.902111 0.930112319 1.112419578 1.278992451 1.134537809 0.897316815 0.886307744 0.753979952 0.301396013 0.964038464 1 13.23270604 -4.243640591 1.288254731 1.009399617 1.34E-18 0.807416672 0.11031499 0.555560869 0.753404279 0.01868223 0.745201649 5.71E-05 4.243640591 -1.009399617 down ALAMPGRPES(ph)PPVFR ddPTM_HeLa_CUDC101_4h_R1 3 ALAMPGRPESPPVFR 15 1 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ERU2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR ;; 151.38 0.00096549 347138000 3335.82 3634.01 3024.55 2712.67 3228.29 2980.82 2752.75 2902.37 3232.94 3115.53 TRUE FALSE FALSE 2944.800236 3745.969541 3188.066322 2823.304408 2990.145478 2923.965825 2858.92449 3232.764069 3099.676845 3096.998689 0.950856146 1.209548313 1.029405125 0.911625962 0.965497819 0.944128855 0.923127446 1.043837726 1.000864758 1 11.59665506 -6.273730482 24.75193778 1.000950436 0.955411528 0.13798606 0.076053111 1545.362066 3112058.629 0.012501583 0.019186618 5.32E-07 6.273730482 -0.045538909 RKS(ph)NFSNSADDIK ddPTM_HeLa_CUDC101_4h_R1 1 RKSNFSNSADDIK 13 2 P45973 P45973 CBX5 Chromobox protein homolog 5 1 0 RKS(0.829)NFS(0.171)NSADDIK 73.593 0.03731 44960000 4042.5 4126.4 4121.4 4072.5 4237.9 4083.5 3618.2 938.13 4646.9 4593.6 TRUE FALSE FALSE 3568.644278 4253.529493 4344.215351 4238.594153 3925.27856 4005.614041 3757.755186 1044.922927 4455.352815 4566.277063 0.781521627 0.931509287 0.951369199 0.928238496 0.859623388 0.8772166 0.822936308 0.228834762 0.975707946 1 12.15680268 -4.243388323 3.115710707 0.899230189 0.110639454 0.918768829 0.060553798 0.104189645 1.473367347 0.011373654 0.204805578 5.71E-05 4.243388323 -0.788590735 down YESQQNGT(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 1 YESQQNGTPLK 11 0 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 YESQQNGT(1)PLK 121.56 0.018846 8059600 1191.2 1103.1 1099.4 897.72 1173.8 961.46 1079 882.74 1261.3 1136.4 TRUE FALSE FALSE 1051.569342 1137.085204 1158.83689 934.3329019 1087.211113 943.1217524 1120.617391 983.2275534 1209.30868 1129.640642 0.930888375 1.006590203 1.025845606 0.827106309 0.962439799 0.834886527 0.992012282 0.870389677 1.070525116 1 10.14164818 -6.273554058 24.99791224 0.974088371 0.902769018 0.388397995 0.062031562 719.5137932 1484671.609 0.008134114 0.012483599 5.33E-07 6.273554058 -0.071319352 MLAEDELR ddPTM_HeLa_CUDC101_4h_R1 2 MLAEDELR 8 0 F5H423;P84077;P61204;P61204-2 F5H423 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 0 0 ; ; 148.04 0.017956 31542000 11147 9527.7 9752.9 9709.1 9113.1 10241.8 8766 8047 10360.8 10880.1 FALSE FALSE TRUE 9840.365558 9821.237144 10280.17127 10105.07906 8440.844769 10046.45473 9104.107556 8963.037953 9933.723439 10815.38468 0.909848872 0.908080242 0.950513697 0.934324517 0.780447947 0.928904059 0.841773809 0.828730389 0.918480824 1 13.40079736 -9.309413291 0.020948937 1.931182002 7.63E-07 0.357614427 0.049297344 390.8268247 2.031194891 102.5370965 85.08269834 4.90E-10 9.309413291 -1.931181239 SKS(ph)PVGNPQLIQFSR ddPTM_HeLa_CUDC101_4h_R1 1 SKSPVGNPQLIQFSR 15 1 G8JLP4;Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3 G8JLP4 KIAA0430 Meiosis arrest female protein 1 1 0 S(0.073)KS(0.927)PVGNPQLIQFSR 139.49 0.0022765 20232000 619.86 738.02 609.81 917.59 788.98 743.35 851.93 887.21 878.77 863.61 TRUE FALSE FALSE 547.2009504 760.7575214 642.7781732 955.0132864 730.7785173 729.1718373 884.7892255 988.2064002 842.5467287 858.4732093 0.637411796 0.886175029 0.748745757 1.11245555 0.851253725 0.84938217 1.030654441 1.151120838 0.9814479 1 9.745629302 -6.273381937 24.92497896 0.824189767 0.984216144 0.216189515 0.135047252 941.6105245 1965206.531 0.024984438 0.038352209 5.33E-07 6.273381937 0.160026376 YEDKPEPEVDALGS(ph)PPALLK ddPTM_HeLa_CUDC101_4h_R1 2 YEDKPEPEVDALGSPPALLK 20 1 Q68DQ2 Q68DQ2 CRYBG3 Very large A-kinase anchor protein 1 0 YEDKPEPEVDALGS(1)PPALLK;YEDKPEPEVDALGS(1)PPALLK ; 107.91 0.0001032 22662500 15313.6 13186.9 13630.3 14869.4 16382.5 16211.9 16210.3 13157.5 14275.2 14292 TRUE FALSE FALSE 13518.56302 13593.17276 14367.19525 15475.8384 15173.99561 15902.68502 16835.5367 14655.29662 13686.77021 14206.99055 0.951543043 0.956794665 1.01127647 1.089311515 1.06806544 1.119356345 1.185017801 1.031555315 0.963382792 1 13.79431336 -6.273357956 1.94453326 0.974732592 1.108728206 0.716418288 0.038988986 0.13589011 1.002206785 0.006310464 0.011030256 5.33E-07 6.273357956 0.133995614 SSS(ph)PIPLT(ph)PSKEGSAVFAGFEGR ddPTM_HeLa_CUDC101_4h_R1 2 SSSPIPLTPSKEGSAVFAGFEGR 23 1 Q8N5Y2;Q8N5Y2-3;Q8N5Y2-2;A0A3B3IT59;Q8N5Y2-6;Q8N5Y2-4;A0A3B3ITL5;A0A3B3ITF3;A0A3F2YNX2;A0A3B3IRN2 Q8N5Y2 MSL3 Male-specific lethal 3 homolog 2 0 S(0.036)S(0.04)S(0.924)PIPLT(0.984)PS(0.013)KEGS(0.003)AVFAGFEGR;S(0.022)S(0.024)S(0.953)PIPLT(0.868)PS(0.127)KEGS(0.005)AVFAGFEGR ; 71.085 0.0028151 16414300 5915.2 4874.8 4771.3 5244.6 6140.8 5783.7 4609.3 4608.5 6018.4 4889.4 TRUE FALSE FALSE 5221.829223 5024.98681 5029.25091 5458.497457 5687.805418 5673.385559 4787.082245 5133.113012 5770.319005 4860.317631 1.07438024 1.033880333 1.034757662 1.123074225 1.17025385 1.167286994 0.984931975 1.056127068 1.187230844 1 12.24683488 -6.273317742 23.5314415 1.035878147 1.101527508 0 0.071309283 395.3969549 783293.1732 0.009153014 0.01405927 5.33E-07 6.273317742 0.065649361 MLDAEDIVGTARPDEK ddPTM_HeLa_CUDC101_4h_R1 2 MLDAEDIVGTARPDEK 16 1 P12814-4;P12814-3;P12814;P12814-2;H9KV75;G3V2N5;G3V2W4 P12814-4 ACTN1 Alpha-actinin-1 0 0 ; ; 109.55 0.0022303 19654100 5581.6 4606.6 4092.5 3524.5 4119.1 4414.1 4471.7 4099.8 4087 5744.4 FALSE FALSE TRUE 4927.333309 4748.523886 4313.752929 3668.244344 3815.242199 4329.908397 4644.174967 4566.50466 3918.53213 5710.232053 0.862895459 0.831581596 0.755442667 0.642398472 0.668141358 0.75827188 0.813307572 0.799705619 0.686229928 1 12.47933366 -7.729203208 0.718481948 0.976599781 0.736695092 0 0.10631768 0.232822275 0.264616879 0.020310167 0.017519665 1.87E-08 7.729203208 -0.239904689 MLDAEDIVNTARPDEK ddPTM_HeLa_CUDC101_4h_R1 2 MLDAEDIVNTARPDEK 16 1 O43707 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 160.63 7.35E-05 29166000 4330.2 3429.3 3494 2974 3402.8 3338.4 3077.4 3280.3 3510.8 4902.1 FALSE FALSE TRUE 3822.62052 3534.952668 3682.896209 3095.292575 3151.782223 3274.725582 3196.096349 3653.716093 3366.083338 4872.942091 0.784458434 0.725424723 0.755784932 0.63519995 0.646792464 0.672022265 0.65588638 0.74979674 0.690770232 1 12.25057736 -8.397376833 0.435490541 1.026750251 0.663553281 0.006838544 0.101249826 0.236279052 0.095553549 0.036980969 0.014551932 4.01E-09 8.397376833 -0.36319697 MLDQTLLDLNEM ddPTM_HeLa_CUDC101_4h_R1 4 MLDQTLLDLNEM 12 0 J3KN67;P06753-7;P06753-2;A0A087WWU8;P06753-5 J3KN67;P06753-2 TPM3 Tropomyosin alpha-3 chain 0 0 ;;; ;;; 170.99 4.26E-06 30267200 6710.79 6500.72 4740.83 4883.8 6450.39 5656.27 5780.89 5358.96 6113.68 5640.49 FALSE FALSE TRUE 5924.161369 6700.999478 4997.13361 5082.982474 5974.557581 5548.386074 6003.860864 5969.002345 5861.671523 5606.940115 1.056576537 1.195125923 0.891240767 0.906551946 1.065564721 0.989556864 1.070790974 1.064573943 1.045431448 1 12.45299795 -9.665287786 1.570912575 1.000270824 1.032482465 0 0.083782926 1.763781752 7.937785116 0.057233735 0.013327601 2.16E-10 9.665287786 0.032211641 MLEDRDLFVMR ddPTM_HeLa_CUDC101_4h_R1 2 MLEDRDLFVMR 11 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ; ; 133.75 0.0021753 14730900 5190.3 5068.5 4399.6 5096.2 5532.9 5068.3 4931 5495.7 4475.9 3526.3 FALSE FALSE TRUE 4581.900902 5224.654477 4637.455684 5304.045064 5124.74899 4971.630622 5121.190322 6121.308274 4291.401508 3505.325411 1.307125692 1.490490572 1.322974372 1.513139136 1.461989513 1.418307871 1.460974295 1.746288163 1.224251961 1 11.77533267 -11.11046225 0.105817326 1.19E-21 1.859407321 0.645595818 0.112000548 15.50793565 0.221837447 4.36598813 0.775812559 7.75E-12 11.11046225 1.859407321 ASVLDTSMSAGSGS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 8 ASVLDTSMSAGSGSPSK 17 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 ASVLDTSMSAGS(0.003)GS(0.996)PSK;ASVLDTSMSAGS(0.007)GS(0.992)PSK;ASVLDTSMSAGS(0.004)GS(0.991)PS(0.004)K;ASVLDTSMSAGS(0.008)GS(0.989)PS(0.003)K;ASVLDTSMSAGS(0.001)GS(0.998)PSK;ASVLDTSMSAGS(0.003)GS(0.975)PS(0.021)K;ASVLDTSMSAGS(0.025)GS(0.908)PS(0.067)K;ASVLDTS(0.001)MS(0.057)AGS(0.382)GS(0.556)PS(0.005)K ;;;;;;; 286.85 1.15E-103 1004868000 30817.1 28685 24292 24607.9 27574.8 22674.6 22353 23837.3 28520.1 28927.7 TRUE FALSE FALSE 27204.76625 29568.75085 25605.299 25611.51653 25540.66194 22242.11978 23215.1627 26550.84188 27344.48941 28755.63675 0.946067252 1.028276685 0.890444514 0.890660734 0.888196709 0.773487298 0.807325635 0.923326515 0.950926235 1 14.81155716 -6.273260589 1.271573112 0.978018919 0.837808987 0.599599371 0.047205041 0.206943102 0.659077126 0.0079433 0.015334599 5.33E-07 6.273260589 -0.140209932 MLEQLDMR ddPTM_HeLa_CUDC101_4h_R1 1 MLEQLDMR 8 0 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;F6TRA5;A0A0A0MT12;F6S4E6;F6WLT2;F6UJC5;A0A140T996;A0A140T9X9;A0A140T9K1;A0A140T973;A0A140T9L4;A0A140TA18;K7EPJ3;O00148;K7EQN7;O00148-3;O00148-2 Q13838-2;O00148 DDX39B;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A 0 0 122.19 0.039033 2235900 2255.3 1670.2 1240.9 1615.4 1788.5 1596 1790.1 1469.4 1685.5 1567.9 FALSE FALSE TRUE 1990.937153 1721.656882 1307.986808 1681.282994 1656.565918 1565.558959 1859.144757 1636.670556 1616.022977 1558.574061 1.277409398 1.104635914 0.839220182 1.078731538 1.062872763 1.004481595 1.1928498 1.050107658 1.03685992 1 10.606011 -6.986471333 24.99747546 1.134158046 1.040315948 0.06537038 0.107264573 422.4583256 780590.8342 0.020955106 0.027533238 1.03E-07 6.986471333 -0.093842098 DLESCS(ph)DDDNQGSK ddPTM_HeLa_CUDC101_4h_R1 4 DLESCSDDDNQGSK 14 0 F8W895;A0A0A0MRK1;E9PAV9;Q5T3I0;Q5T3I0-3 F8W895 GPATCH4 G patch domain-containing protein 4 1 0 DLES(0.161)CS(0.839)DDDNQGSK;DLESCS(1)DDDNQGSK;DLESCS(1)DDDNQGSK;DLESCS(1)DDDNQGSK ;;; 302.74 3.08E-123 93730000 15666 13002.7 11678.7 11346.3 10736.3 11762.6 12155 10514.9 12964.2 11445.8 TRUE FALSE FALSE 13829.65523 13403.29778 12310.08585 11809.05116 9944.304539 11538.248 12623.82242 11711.87371 12429.81019 11377.71987 1.215503228 1.178030214 1.081946645 1.037910169 0.874015589 1.01410899 1.109521289 1.029369139 1.092469346 1 13.47392385 -6.273104832 3.642113605 1.110674295 1.009376933 0.311450915 0.075922245 0.314719883 9.158528695 0.015674902 0.025510418 5.33E-07 6.273104832 -0.101297363 AELPGSS(ph)SPLLAQPR ddPTM_HeLa_CUDC101_4h_R1 1 AELPGSSSPLLAQPR 15 0 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 0 AELPGS(0.096)S(0.452)S(0.452)PLLAQPR 106.55 0.0032087 23852000 2649.2 2562.6 2242.5 2037.8 2422 2276.1 2129.1 2063.1 2363 2149.6 TRUE FALSE FALSE 2338.664792 2641.550669 2363.736333 2120.910292 2243.333885 2232.687185 2211.2201 2297.954965 2265.59614 2136.814084 1.094463393 1.236209874 1.106196534 0.992557241 1.049849822 1.044867311 1.034821006 1.075411746 1.060268255 1 11.06124567 -6.273085808 24.7307202 1.06735841 1.040114415 0.089516433 0.062445415 2329.42578 4946437.663 0.011671949 0.017925022 5.33E-07 6.273085808 -0.027243996 YYLATDPVTGDLYVSDT(ph)NT(ph)RRIY(ph)RPK ddPTM_HeLa_CUDC101_4h_R1 1 YYLATDPVTGDLYVSDTNTRRIYRPK 26 3 Q9P273 Q9P273 TENM3 Teneurin-3 3 0 Y(0.008)Y(0.03)LAT(0.031)DPVT(0.096)GDLY(0.363)VS(0.374)DT(0.703)NT(0.703)RRIY(0.692)RPK 42.904 0.0025955 0 266.12 241.71 264.07 419.23 418.19 346.01 403.86 342.66 530 361.58 TRUE FALSE FALSE 234.925817 249.1567986 278.346423 436.3280115 387.3409569 339.4104357 419.4370155 381.6670293 508.1531757 359.4293061 0.653607853 0.693201123 0.774412154 1.213946676 1.077655467 0.944303734 1.166952745 1.061869533 1.413777806 1 8.489564234 -6.272842198 24.65766605 0.815022319 1.087949802 0.084188453 0.218816395 438.8133635 948897.0005 0.023493434 0.036085161 5.34E-07 6.272842198 0.272927482 QIDSS(ph)PVGGETDETTVSQNYR ddPTM_HeLa_CUDC101_4h_R1 2 QIDSSPVGGETDETTVSQNYR 21 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 QIDS(0.369)S(0.631)PVGGETDETTVSQNYR;QIDS(0.216)S(0.784)PVGGETDETTVSQNYR ; 161.22 1.40E-07 47223000 4843.4 4471.9 4094.3 3802.4 4066.3 3982.6 3962.9 4132.2 4602.4 4287.4 TRUE FALSE FALSE 4275.663994 4609.673938 4315.650243 3957.478307 3766.33715 3906.63854 4115.75038 4602.592945 4412.687124 4261.898354 1.003229932 1.081601098 1.012612194 0.928571725 0.883722895 0.916642823 0.965708245 1.079939633 1.035380658 1 12.05728047 -6.272590881 23.81713593 1.009599542 0.949434997 0.278597286 0.053958922 446.7257826 954106.916 0.008411931 0.012930856 5.34E-07 6.272590881 -0.060164545 SKSEVIEDS(ph)DVETVSEKK ddPTM_HeLa_CUDC101_4h_R1 1 SKSEVIEDSDVETVSEKK 18 2 Q56NI9;E5RFE4 Q56NI9 ESCO2 N-acetyltransferase ESCO2 1 0 SKSEVIEDS(1)DVETVSEKK 121.25 3.46E-05 0 850.1 747.43 830.23 965.23 1013.5 806.66 1035.6 1019.9 970.82 1012.3 TRUE FALSE FALSE 750.4525667 770.4574324 875.1147451 1004.596251 938.7361242 791.2743045 1075.543439 1136.001293 930.8023887 1006.278795 0.74577003 0.765650073 0.869654364 0.998327955 0.93287877 0.786337056 1.068832459 1.12891308 0.924994538 1 9.974814351 -6.27218723 21.42143601 0.865805066 0.97410645 0.239185227 0.107910975 164.8936839 328648.7855 0.020479724 0.031551193 5.34E-07 6.27218723 0.108301384 MLITILGTVKPNANR ddPTM_HeLa_CUDC101_4h_R1 3 MLITILGTVKPNANR 15 1 P17931;G3V3R6 P17931 LGALS3 Galectin-3;Galectin 0 0 ;; ;; 147.52 0.0054253 3215340 227.35 232.98 137.44 258.89 0 143.85 0 79.23 146.37 71.954 FALSE FALSE TRUE 200.7003776 240.1578377 144.8704221 269.4486532 0 141.1063009 0 88.24922294 140.3365666 71.52601441 2.805977368 3.357629244 2.025422825 3.767142003 0 1.97279692 0 1.233805961 1.962035321 1 6.160396148 -5.736318243 24.99997259 2.13210948 0.828043608 0.407711358 0.937962357 250.1485038 248940.6234 0.155749166 0.311398747 1.84E-06 5.736318243 -1.304065872 RKTS(ph)QSEEEEAPR ddPTM_HeLa_CUDC101_4h_R1 1 RKTSQSEEEEAPR 13 2 Q7RTP6;A0A5F9ZHV5;J3KSK6;Q7RTP6-2;Q7RTP6-4;Q7RTP6-3;Q7RTP6-5 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 RKT(0.001)S(0.997)QS(0.002)EEEEAPR 98.421 0.0044103 2376500 441.12 340.15 388.74 657.11 525.71 652.46 713.68 423.77 454.79 500.38 TRUE FALSE FALSE 389.4125823 350.6296183 409.7564603 683.9097861 486.9294207 640.0154126 741.2068767 472.0102639 436.0433637 497.4037175 0.782890374 0.704919577 0.823790506 1.374959137 0.978942062 1.286712162 1.490151462 0.948948002 0.876638731 1 8.95827348 -6.272170987 24.94633725 0.872342643 1.221941343 0.549847134 0.169653995 446.6601014 1038290.108 0.026901605 0.041353945 5.34E-07 6.272170987 0.3495987 RSS(ph)DPALIGLSTSVSDSNFSSEEPSRK ddPTM_HeLa_CUDC101_4h_R1 1 RSSDPALIGLSTSVSDSNFSSEEPSRK 27 2 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-5;Q8TEW0-9;Q8TEW0-8;Q5VWU8;Q8TEW0-10 Q5VWV2 PARD3 Partitioning defective 3 homolog 1 0 RS(0.301)S(0.684)DPALIGLS(0.012)T(0.003)SVSDSNFSSEEPSRK 88.504 6.47E-06 9888500 511.74 565.63 470.67 325.35 528.46 336.21 430.18 330.92 420.93 417.07 TRUE FALSE FALSE 451.7546129 583.0563899 496.1158439 338.6191793 489.4765586 329.7973544 446.7721867 368.5905952 403.5790872 414.5892491 1.08964382 1.406347104 1.196644257 0.816758225 1.180630129 0.795479755 1.077626079 0.889050056 0.973443205 1 8.695538896 -6.272024155 24.88578413 1.087020676 0.962909367 0.221039512 0.158074768 1095.488829 2575592.986 0.024529039 0.037706785 5.35E-07 6.272024155 -0.124111309 TPDELY(ph)FEEGDIIY(ph)ITDMS(ph)DT(ph)NWWK ddPTM_HeLa_CUDC101_4h_R1 1 TPDELYFEEGDIIYITDMSDTNWWK 25 0 Q92882 Q92882 OSTF1 Osteoclast-stimulating factor 1 4 0 T(0.108)PDELY(0.893)FEEGDIIY(0.814)IT(0.186)DMS(1)DT(1)NWWK 60.797 0.00063995 0 3201.8 2919.6 3068.1 2221.4 2841.6 3278.8 2311.9 2354.5 3357 3106.6 TRUE FALSE FALSE 2826.489858 3009.549415 3233.970766 2311.998294 2631.980829 3216.262353 2401.070757 2622.526763 3218.623039 3088.121805 0.91527797 0.974556577 1.047229018 0.748674579 0.85229178 1.041494655 0.777518151 0.84923035 1.042259095 1 11.59251394 -6.271622539 24.99073997 0.966248108 0.859940727 0.4011589 0.082734787 678.2887173 1664602.818 0.012412269 0.01909842 5.35E-07 6.271622539 -0.106307381 MLPDK(ac)DCR ddPTM_HeLa_CUDC101_4h_R1 2 MLPDKDCR 8 1 P23528;G3V1A4;E9PP50;E9PK25;E9PQB7;E9PLJ3;E9PS23 P23528 CFL1 Cofilin-1 0 1 ; MLPDK(1)DCR;MLPDK(1)DCR 99.442 0.015487 18001300 16124.1 5791.4 3795 5350.5 10382.3 10155.4 10628.9 8023.9 6527.1 2411.4 FALSE TRUE FALSE 14234.05744 5969.82617 4000.169179 5568.716517 9616.418413 9961.702665 11038.86023 8937.308342 6258.050175 2397.056886 5.938139193 2.490481642 1.668783583 2.323147419 4.011760618 4.155805699 4.60517241 3.728450666 2.610722429 1 11.22704843 -9.650814042 1.498975088 1.005328675 3.902661134 0.183681394 1.280921458 0.358414185 1.452547842 1.021784195 0.232579954 2.23E-10 9.650814042 2.897332459 MLPDKDCR ddPTM_HeLa_CUDC101_4h_R1 2 MLPDKDCR 8 1 P23528;G3V1A4;E9PP50;E9PK25;E9PQB7;E9PLJ3;E9PS23 P23528 CFL1 Cofilin-1 0 0 ; ; 102.77 0.020282 280840000 20471 13723.3 8819.3 14166.3 11689.4 11450.6 11333 10439.2 8020 2386 FALSE FALSE TRUE 18071.42041 14146.09861 9296.098035 14744.06295 10827.09625 11232.19888 11770.11761 11627.55633 7689.412205 2371.807966 7.619259515 5.964268107 3.91941429 6.216381409 4.564912677 4.735711763 4.962508675 4.902402091 3.242004545 1 11.21177149 -9.502445976 1.253188103 1.002415508 5.558649366 0.511829518 1.18926979 0.214036524 0.602111183 0.830422315 0.201635224 3.14E-10 9.502445976 4.556233857 EQDNSESPNGRT(ph)SPLVSQNNEQGSTLR ddPTM_HeLa_CUDC101_4h_R1 1 EQDNSESPNGRTSPLVSQNNEQGSTLR 27 1 A0A1W2PNZ9;Q15652-3;Q15652;H7BXU7 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 EQDNS(0.005)ES(0.153)PNGRT(0.48)S(0.36)PLVS(0.001)QNNEQGSTLR 66.372 0.0011878 9929700 999.74 841.04 773.65 1023.2 1187.5 957.63 945.27 842.02 868.3 769.92 TRUE FALSE FALSE 882.5519927 866.9514455 815.4758592 1064.930519 1099.900491 939.3648033 981.7293805 937.8721532 832.5083065 765.3404816 1.153149499 1.132765699 1.065507286 1.391446741 1.437138786 1.227381572 1.282735468 1.225431263 1.087762018 1 9.579957901 -6.271385028 24.67785011 1.079188076 1.313314295 0.706755711 0.072354959 278.2067396 690305.6649 0.01341438 0.020642699 5.35E-07 6.271385028 0.234126219 SRT(ph)ASLTSAAS(ph)VDGNR ddPTM_HeLa_CUDC101_4h_R1 1 SRTASLTSAASVDGNR 16 1 G3V578;H0YJT9;A0A0A0MS87;Q9UN36-4;Q9UN36-5;Q9UN36-2;Q9UN36-3;Q9UN36-6;Q9UN36 G3V578 NDRG2 Protein NDRG2 2 0 S(0.141)RT(0.86)AS(0.148)LT(0.148)S(0.202)AAS(0.501)VDGNR 120.82 0.0047691 8831500 2558.5 2436.9 2501.9 2350.4 3344.5 2948.6 2337.9 2645.1 2495.3 2556.8 TRUE FALSE FALSE 2258.596508 2511.978001 2637.160282 2446.259471 3097.782898 2892.360368 2428.073586 2946.207492 2392.442678 2541.59204 0.888654227 0.988348233 1.037601724 0.962491003 1.218835615 1.138011263 0.95533569 1.159197639 0.941316561 1 11.31151676 -6.271332087 1.500098068 0.949841505 1.10103393 0.418235987 0.078036056 0.297002201 1.309078255 0.013506024 0.024919703 5.35E-07 6.271332087 0.151192425 MLQEDELR ddPTM_HeLa_CUDC101_4h_R1 1 MLQEDELR 8 0 P84085 P84085 ARF5 ADP-ribosylation factor 5 0 0 143.89 0.020115 12625000 3466.3 3133.2 3618.3 2846.4 3086.1 3332.6 2876.8 2594.1 3512.7 3935.7 FALSE FALSE TRUE 3059.985569 3229.730178 3813.916243 2962.488495 2858.444551 3269.036207 2987.75914 2889.401858 3367.905019 3912.290281 0.782146862 0.825534392 0.974855128 0.757226147 0.73063202 0.8355812 0.763685444 0.738544855 0.860852538 1 11.9337977 -13.52287875 0.216788399 2.052918417 0.767151286 0.251807615 0.077854001 26.36557826 0.331978212 11.76805508 0.056205792 3.00E-14 13.52287875 -1.285767132 WDETPASQMGGST(ph)PVLTPGK ddPTM_HeLa_CUDC101_4h_R1 1 WDETPASQMGGSTPVLTPGK 20 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 WDETPASQMGGS(0.361)T(0.635)PVLT(0.005)PGK 88.264 0.0031405 7714100 2038.7 1829.1 1684.2 1451.9 1854.7 1719.2 1234.9 1584.2 2149.6 1645.8 TRUE FALSE FALSE 1799.726676 1885.452403 1775.252946 1511.114758 1717.882476 1686.409124 1282.530507 1764.538924 2060.992578 1636.010708 1.10007023 1.152469475 1.085110835 0.923658232 1.05004354 1.030805676 0.783937721 1.078561965 1.259767169 1 10.67596648 -6.270294784 24.56965104 1.060601695 0.970322685 0.242120097 0.106105553 636.6406698 1766381.642 0.013493322 0.020803763 5.37E-07 6.270294784 -0.09027901 YTVFQT(ph)T(ph)GS(ph)VPIATVIINEASGSR ddPTM_HeLa_CUDC101_4h_R1 1 YTVFQTTGSVPIATVIINEASGSR 24 0 C9JDL1;P50053-2 C9JDL1 KHK 3 0 Y(0.235)T(0.412)VFQT(0.476)T(0.937)GS(0.93)VPIAT(0.003)VIINEAS(0.003)GS(0.003)R 45.666 0.035318 130000000 3428.2 2923.8 2880.6 3476.2 3632.8 3534.5 3054.2 3288.6 3434.5 3329.5 TRUE FALSE FALSE 3026.351593 3013.878812 3036.333949 3617.974461 3364.815582 3467.085301 3172.001517 3662.960931 3292.928456 3309.695986 0.914389601 0.910621044 0.917405696 1.093144046 1.016653975 1.04755401 0.958396641 1.106736373 0.994933816 1 11.69248299 -6.270023081 24.87267039 0.951220774 1.038336654 0.50225535 0.048027551 443.663293 1285584.754 0.007863904 0.012138183 5.37E-07 6.270023081 0.08711588 GNVFS(ph)SPTAAGT(ph)PNKETAGLK ddPTM_HeLa_CUDC101_4h_R1 2 GNVFSSPTAAGTPNKETAGLK 21 1 E9PGZ1;Q05682-5;Q05682-4;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682 E9PGZ1;E7EX44;Q05682 CALD1 Caldesmon 2 0 GNVFS(0.579)S(0.381)PT(0.038)AAGT(0.977)PNKET(0.025)AGLK;GNVFS(0.858)S(0.126)PT(0.017)AAGT(0.999)PNKET(0.001)AGLK ; 137.58 9.10E-07 256885000 11984.4 9549.2 10456.1 11081.2 11191 11092.1 8688.3 2927 10799 11132.3 TRUE FALSE FALSE 10579.6068 9843.399533 11021.38839 11533.13923 10365.46223 10880.53667 9023.410641 3260.197849 10353.86065 11066.08458 0.956038852 0.8895106 0.995960975 1.042205953 0.936687421 0.983232741 0.81541132 0.294611687 0.93563903 1 13.43385724 -4.243265084 2.229498212 0.975691561 0.098525341 0.959891064 0.041219317 0.0853361 0.463011047 0.005710586 0.149594745 5.71E-05 4.243265084 -0.87716622 down LKEDILENEDEQNS(ph)PPKK ddPTM_HeLa_CUDC101_4h_R1 3 LKEDILENEDEQNSPPKK 18 2 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 LKEDILENEDEQNS(1)PPKK;LKEDILENEDEQNS(1)PPKK;LKEDILENEDEQNS(1)PPKK ;; 74.12 0.01261 105821000 11069 8300.3 8902.5 8113.1 8778.4 8697.4 7566.2 7026.45 8373.4 9542.7 TRUE FALSE FALSE 9771.5086 8556.022405 9383.796079 8443.987286 8130.834921 8531.511586 7858.030869 7826.312666 8028.244908 9485.939596 1.030104451 0.90196889 0.989232114 0.890158239 0.857145973 0.899384979 0.828387192 0.825043485 0.846331017 1 13.21157497 -6.269696408 0.738183382 1.014607499 0.835797692 0.199715855 0.063253787 0.205554 0.219406748 0.007074219 0.017258413 5.37E-07 6.269696408 -0.178809808 EVSSRPST(ph)PGLS(ph)VVSGISATSEDIPNK ddPTM_HeLa_CUDC101_4h_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNK 27 1 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 EVS(0.368)S(0.368)RPS(0.382)T(0.398)PGLS(0.396)VVS(0.078)GIS(0.003)AT(0.002)S(0.005)EDIPNK 53.844 0.019577 34367000 3149.4 1978.7 1939.3 1932 1774.9 1918.9 1706.5 1033.1 2117.5 2226.4 TRUE FALSE FALSE 2780.232106 2039.661402 2044.144424 2010.795311 1643.969163 1882.30018 1772.320277 1150.703928 2030.215754 2213.157274 1.25622889 0.921607075 0.923632698 0.908564129 0.742816239 0.850504481 0.800810813 0.519937711 0.917339124 1 11.11189026 -6.268691463 0.912258633 1.115686328 0.717008373 0.498252446 0.126161684 0.27844042 0.458305141 0.024686365 0.054386021 5.39E-07 6.268691463 -0.398677955 MLTAQDMSYDEAR ddPTM_HeLa_CUDC101_4h_R1 1 MLTAQDMSYDEAR 13 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 167.11 4.52E-05 6469400 567.2 568.65 409.69 601.67 837.7 493.29 535.33 655.26 503.35 777.32 FALSE FALSE TRUE 500.7136758 586.1694325 431.8390806 626.2087032 775.9045399 483.8813151 555.9778574 729.8521497 482.6017 772.6964661 0.648008238 0.75860245 0.558872856 0.810420043 1.004151791 0.626224315 0.719529442 0.944552204 0.624568276 1 9.59375799 -9.45365595 1.18630774 1.000076464 0.745842708 0 0.173759632 0.437673113 1.101234889 0.090694192 0.022473572 3.52E-10 9.45365595 -0.254233756 MLTESGDPEEEEEEEEELVDPLTTVR ddPTM_HeLa_CUDC101_4h_R1 1 MLTESGDPEEEEEEEEELVDPLTTVR 26 0 P07919;A0A096LP55 P07919 UQCRH;UQCRHL "Cytochrome b-c1 complex subunit 6, mitochondrial;Cytochrome b-c1 complex subunit 6" 0 0 152.28 4.86E-11 1863600 837.34 747.79 584.49 815.69 876.03 737.33 836.86 714.37 603.57 452.33 FALSE FALSE TRUE 739.1882745 770.8285236 616.0892974 848.9573639 811.4070122 723.2666587 869.1379705 795.6909932 578.6905891 449.639521 1.643957526 1.71432556 1.370184934 1.888084397 1.804572272 1.608547792 1.932966143 1.769619786 1.287010065 1 8.812625037 -10.77695725 0.233698461 4.03E-16 1.854064419 0.651686843 0.165912772 4.013825329 0.159517482 2.226459018 0.114734936 1.67E-11 10.77695725 1.854064419 VSVTPPEESQNSDT(ph)PPRPDR ddPTM_HeLa_CUDC101_4h_R1 1 VSVTPPEESQNSDTPPRPDR 20 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 VSVTPPEESQNS(0.009)DT(0.991)PPRPDR 96.447 0.001312 15791000 856.81 830.19 775.05 548.79 671.67 633.5 702.28 466.18 811.86 841.84 TRUE FALSE FALSE 756.3760306 855.7671699 816.9515474 571.1720283 622.1222423 621.417043 729.3671748 519.2480468 778.3947872 836.8326982 0.903855732 1.022626353 0.976242383 0.682540285 0.743424873 0.742582172 0.871580635 0.620492062 0.930167749 1 9.708795414 -6.268386827 24.99002816 0.961105361 0.74108043 0.753533663 0.066908876 214.3403725 770983.6425 0.01034156 0.016011989 5.39E-07 6.268386827 -0.220024931 GPAADPS(ph)SPGTSGVGPAAGAGDSR ddPTM_HeLa_CUDC101_4h_R1 1 GPAADPSSPGTSGVGPAAGAGDSR 24 0 A0A0U1RRM4 A0A0U1RRM4 1 0 GPAADPS(0.911)S(0.087)PGT(0.001)SGVGPAAGAGDSR 191.71 1.17E-15 24273000 2846.5 2762.8 2508.8 2048 2453.2 2338.6 2176.8 2155.4 2792.2 2541.9 TRUE FALSE FALSE 2512.837585 2847.918593 2644.433317 2131.526292 2272.232323 2293.995101 2260.759905 2400.762024 2677.104334 2526.780666 0.994481879 1.127093709 1.046562273 0.843573928 0.899259819 0.907872667 0.894719489 0.950126798 1.059492171 1 11.30308472 -6.268192849 24.98012638 1.012471262 0.89936167 0.678806668 0.047722104 297.8284609 1101624.459 0.007512292 0.011633229 5.39E-07 6.268192849 -0.113109591 KNS(ph)LRVEGDNIYVR ddPTM_HeLa_CUDC101_4h_R1 1 KNSLRVEGDNIYVR 14 2 O43491;H0Y5B0 O43491 EPB41L2 Band 4.1-like protein 2 1 0 KNS(1)LRVEGDNIYVR 63.662 0.02604 38514000 1955.7 1551.9 1318.1 2412.8 2305.5 1887.9 1872.8 2101.1 1820.5 1736.3 TRUE FALSE FALSE 1726.455811 1599.7122 1389.360473 2511.204413 2135.427858 1851.891453 1945.034523 2340.280731 1745.458219 1725.97241 1.000280074 0.926846912 0.804972585 1.454950495 1.237231746 1.07295542 1.126920982 1.355920128 1.011289757 1 10.75319369 -6.268061175 24.99924978 0.980166974 1.232280248 0.616713696 0.116910662 315.7695397 1192123.009 0.017997514 0.027886497 5.39E-07 6.268061175 0.252113274 EGITGPPADSSKPIGPDDAIDALS(ph)SDFTCGSPTAAGKK ddPTM_HeLa_CUDC101_4h_R1 1 EGITGPPADSSKPIGPDDAIDALSSDFTCGSPTAAGKK 38 2 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;H0YA91;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 1 0 EGITGPPADSSKPIGPDDAIDALS(0.25)S(0.25)DFT(0.25)CGS(0.211)PT(0.038)AAGKK 53.819 0.001663 85767000 210.04 191.57 182.48 400.01 507.77 306.94 127.47 395.04 472.07 330.57 TRUE FALSE FALSE 185.4194296 197.4720446 192.3454208 416.3241368 470.3128187 301.0856309 132.3865606 440.0097568 452.6110748 328.6037549 0.564264488 0.600942751 0.585341518 1.266948812 1.431246027 0.916257427 0.402875982 1.33902839 1.377376454 1 8.360205156 -6.267488678 24.93307521 0.757194465 1.045524964 0.090486812 0.353328691 689.9073794 2843553.631 0.050040446 0.077672853 5.40E-07 6.267488678 0.288330499 MMAWTTAR ddPTM_HeLa_CUDC101_4h_R1 1 MMAWTTAR 8 0 G3V589 G3V589 SNX6 0 0 73.975 0.0024333 0 2335.2 2248.2 1842.2 1661.8 2115.3 2211.5 1774.3 1693.7 2448.6 1430.7 FALSE FALSE TRUE 2061.471396 2317.464377 1941.794904 1729.575387 1959.258533 2169.319322 1842.735345 1886.503962 2347.667672 1422.190133 1.44950478 1.629503907 1.365355348 1.216135133 1.37763474 1.525337064 1.295702524 1.326478027 1.650741077 1 10.47389864 -9.210615264 0.944015559 0.999285164 1.399008585 0 0.228452013 0.296719584 0.474296216 0.080084266 0.02228775 6.16E-10 9.210615264 0.399723421 VPGPAEGPAEPAAEAS(ph)DEAERR ddPTM_HeLa_CUDC101_4h_R1 1 VPGPAEGPAEPAAEASDEAERR 22 1 H0YFQ2;Q24JP5-4;Q24JP5;Q24JP5-2 H0YFQ2 TMEM132A Transmembrane protein 132A 1 0 VPGPAEGPAEPAAEAS(1)DEAERR 71.592 0.0016263 5035400 712.01 823.38 902.76 867.04 1181.4 1017 944.64 797.78 964.16 1118.8 TRUE FALSE FALSE 628.5492671 848.7473619 951.5659363 902.4016389 1094.250476 997.6024194 981.0750812 888.5960505 924.4169167 1112.145328 0.565168285 0.763162278 0.855612942 0.811406222 0.98390961 0.897007248 0.882146476 0.798992747 0.831201547 1 10.11912961 -6.26744706 2.16706615 0.788388291 0.887406524 0.113819459 0.109612219 0.738224162 6.773609219 0.026810855 0.046192745 5.40E-07 6.26744706 0.099018233 S(ph)VGDGETVEFDVVEGEK ddPTM_HeLa_CUDC101_4h_R1 1 SVGDGETVEFDVVEGEK 17 0 H0Y449;P67809;A0A0D9SEI8;Q9Y2T7;P16989-2;P16989-3;P16989 H0Y449;P16989-2 YBX1;YBX3;YBX2 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 1 0 S(0.5)VGDGET(0.5)VEFDVVEGEK 255.72 6.63E-58 7218200 1234.5 1113.1 1090.9 1814.4 1638.3 1768.4 1831.2 1556.7 1023.2 1333.8 TRUE FALSE FALSE 1089.793781 1147.393292 1149.877354 1888.399075 1517.445873 1734.670716 1901.829997 1733.908436 981.0232629 1325.866498 0.821948351 0.865391269 0.867264808 1.424275428 1.144493714 1.30832985 1.434405349 1.307754919 0.739911042 1 10.3727198 -6.26707878 24.99961688 0.905873398 1.319167042 0.838878051 0.100827717 144.7119514 641511.7636 0.015287812 0.023758101 5.41E-07 6.26707878 0.413293644 MMDYLQGSGETPQTDVR ddPTM_HeLa_CUDC101_4h_R1 1 MMDYLQGSGETPQTDVR 17 0 Q14697;Q14697-2;F5H6X6;E9PKU7 Q14697 GANAB Neutral alpha-glucosidase AB 0 0 92.906 0.027014 15474000 1379.7 1153.7 1374.1 1068.2 1243.7 1280.3 1343.7 1252.1 991.5 1293.2 FALSE FALSE TRUE 1217.973657 1189.24413 1448.388002 1111.765813 1151.954729 1255.880411 1395.526959 1394.634003 950.6299503 1285.507989 0.947464868 0.925116094 1.126704785 0.864845511 0.896108572 0.97695263 1.085584042 1.084889409 0.739497505 1 10.32812286 -4.772895977 6.106219644 0.968320982 1.086278496 0.21989911 0.098335241 0.122006111 16.84960973 0.009083374 0.030338266 1.69E-05 4.772895977 0.117957514 SRT(ph)GSESSQTGTSTTSSR ddPTM_HeLa_CUDC101_4h_R1 2 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.008)RT(0.991)GS(0.001)ESSQTGTSTTSSR;S(0.409)RT(0.573)GS(0.018)ESSQTGTSTTSSR ; 185.92 3.76E-11 53044200 522.13 510.47 376.87 243.18 294.374 313.66 269.08 255.42 452.72 284.25 TRUE FALSE FALSE 460.9267129 526.1969756 397.2447322 253.0979315 272.6586165 307.6774581 279.4585057 284.4959804 434.05869 282.5592684 1.631256747 1.862253462 1.40588109 0.895733957 0.964960796 1.088895296 0.989026151 1.00685418 1.536168651 1 8.142409702 -6.266783519 24.71241768 1.364301792 0.993294073 0.519900558 0.224246769 403.9494346 1867946.696 0.046853963 0.072892739 5.41E-07 6.266783519 -0.371007719 SNS(ph)FSDER ddPTM_HeLa_CUDC101_4h_R1 4 SNSFSDER 8 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.001)NS(0.97)FS(0.028)DER;S(0.002)NS(0.512)FS(0.486)DER;SNS(0.519)FS(0.481)DER;S(0.002)NS(0.503)FS(0.495)DER ;;; 131.42 0.0053636 255782500 23535.4 19460.9 18803.3 18208 16222.8 18079.2 16768.4 13989.6 19595.7 21592.2 TRUE FALSE FALSE 20776.61609 20060.46726 19819.86327 18950.60094 15026.07636 17734.36938 17415.16281 15582.11952 18787.95695 21463.76863 0.967985466 0.934619992 0.923410218 0.882911164 0.700067012 0.826246764 0.811374885 0.72597314 0.875333557 1 14.38961579 -6.266458632 1.19327671 0.984176899 0.770706917 0.663623356 0.054538368 0.125928374 0.353850154 0.007075951 0.014002262 5.41E-07 6.266458632 -0.213469982 NSKYEYDPDIS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 NSKYEYDPDISPPR 14 1 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 NS(0.003)KY(0.003)EY(0.003)DPDIS(0.992)PPR 61.52 0.038992 29694000 3012.8 3388.5 3118.6 3571.9 4613.8 3751 3993.4 4278.5 3725.2 2922.3 TRUE FALSE FALSE 2659.644151 3492.895669 3287.200949 3717.577521 4273.449166 3679.455925 4147.426776 4765.547146 3571.645679 2904.91803 0.91556599 1.202407652 1.131598522 1.279752986 1.471108349 1.266629863 1.427725923 1.640510024 1.229516855 1 11.50428174 -6.266416421 0.737107663 0.956258597 1.491307361 0.603905341 0.129710083 0.200077893 0.212836702 0.020548023 0.050304277 5.41E-07 6.266416421 0.535048765 FGSTGST(ph)PPVSPTPSER ddPTM_HeLa_CUDC101_4h_R1 1 FGSTGSTPPVSPTPSER 17 0 A0A087WU73;W0Z7M9;B0QY83;A0A499FIJ6;Q969V6;E7ER32;A0A087X287;A0A494BZX7 A0A087WU73 MKL1;mkl1 MKL/myocardin-like protein 1 1 0 FGS(0.001)T(0.003)GS(0.068)T(0.907)PPVS(0.02)PT(0.001)PSER 97.2 0.019954 48231000 2884.9 2728.8 2762.6 2265.1 2792.7 2646.7 2376.4 2548 2770.9 2864.7 TRUE FALSE FALSE 2546.736395 2812.871094 2911.954512 2357.480569 2586.688085 2596.218607 2468.058544 2838.054021 2656.682329 2847.660637 0.894325806 0.987783115 1.022577787 0.827865701 0.908355459 0.911702249 0.866696864 0.996626488 0.932935019 1 11.47556151 -6.266364293 24.99910923 0.957198415 0.901138604 0.269436108 0.052364401 557.6538595 2830678.324 0.008912899 0.013876983 5.42E-07 6.266364293 -0.056059811 T(ph)PPTANHPVEPVTSVTQPSELLQQK ddPTM_HeLa_CUDC101_4h_R1 1 TPPTANHPVEPVTSVTQPSELLQQK 25 0 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 1 0 T(0.593)PPT(0.405)ANHPVEPVT(0.001)SVTQPSELLQQK 80.009 0.00012078 14638000 1232.6 1418.8 1327.2 876.04 1358.8 978.51 1069.8 937.51 1269.4 1391.6 TRUE FALSE FALSE 1088.116497 1462.511546 1398.952447 911.7686978 1258.564031 959.8465521 1111.062544 1044.232349 1217.074795 1383.322701 0.786596284 1.057245388 1.011298698 0.659114968 0.909812316 0.69387031 0.803183916 0.75487256 0.879819867 1 10.43392203 -6.2658725 24.97473626 0.91867297 0.770523821 0.462133904 0.096099106 361.948212 2039096.046 0.017005647 0.026538705 5.42E-07 6.2658725 -0.14814915 KSVS(ph)PKLS(ph)PVIS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 KSVSPKLSPVISPR 14 2 Q08499-6;Q08499-12;Q08499-7 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 3 0 KS(0.205)VS(0.85)PKLS(0.977)PVIS(0.968)PR 93.812 0.015197 21415000 3391.3 3097.8 2886.7 2541.7 2988.1 2744.8 2642.7 2275.6 2893.8 3085.2 TRUE FALSE FALSE 2993.776955 3193.239546 3042.763734 2645.361512 2767.673816 2692.447513 2744.629824 2534.645106 2774.516339 3066.849093 0.976173546 1.041211827 0.992146546 0.862566573 0.902448647 0.87791979 0.894934749 0.826465545 0.904679772 1 11.58254146 -6.265859 24.84326381 0.993463884 0.87601717 0.675931599 0.037685935 95.08318206 534474.8119 0.003840459 0.005993397 5.42E-07 6.265859 -0.117446713 MNQVEDEVFEEFCR ddPTM_HeLa_CUDC101_4h_R1 2 MNQVEDEVFEEFCR 14 0 Q14683;G8JLG1 Q14683 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein 0 0 ; ; 158.86 0.00031176 7918500 2234.58 1835.56 2053.73 1733.37 1890.61 2043.78 1699.06 1640.19 2378.9 1838.47 FALSE FALSE TRUE 1972.64592 1892.111428 2164.760856 1804.064321 1751.143467 2004.798302 1764.593313 1826.9026 2280.840735 1827.534699 1.079402717 1.035335433 1.184525173 0.987157356 0.958199846 1.096996026 0.965559403 0.999654125 1.248042369 1 10.83568308 MLSST(ph)PPTPIACAPSAVNQAAPHQQNR ddPTM_HeLa_CUDC101_4h_R1 1 MLSSTPPTPIACAPSAVNQAAPHQQNR 27 0 A0A088AWL3;O75376;O75376-2;E7EVK1 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 MLS(0.053)S(0.185)T(0.662)PPT(0.1)PIACAPSAVNQAAPHQQNR 112.85 5.76E-08 15283000 1468.4 1209 1229.1 951.65 1128.9 988.68 1032.5 1289 1372.8 1113.9 TRUE FALSE FALSE 1296.276378 1246.247857 1295.548864 990.4624004 1045.623296 969.8225763 1072.323871 1435.73455 1316.212603 1107.274473 1.170691106 1.125509426 1.170034075 0.894504862 0.944321685 0.875864657 0.968435466 1.296638353 1.188695879 1 10.11279717 -6.265701847 24.99866088 1.092831359 0.984884272 0.200761814 0.122498221 553.1809694 3244313.64 0.019396462 0.030290305 5.42E-07 6.265701847 -0.107947087 KLDFNS(ph)PGGS(ph)SPVENSDCSTNSR ddPTM_HeLa_CUDC101_4h_R1 1 KLDFNSPGGSSPVENSDCSTNSR 23 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 2 0 KLDFNS(0.986)PGGS(0.833)S(0.178)PVENS(0.002)DCSTNSR 59.65 0.0057677 6753800 1141.6 1172.9 974.58 780.57 882.85 879.91 793.41 741.41 983.19 1024.1 TRUE FALSE FALSE 1007.783379 1209.035659 1027.268743 812.4050185 817.7239144 863.1271828 824.0120895 825.8091175 942.6624921 1018.008608 0.989955656 1.187647776 1.009096323 0.798033545 0.80325835 0.847858433 0.809435287 0.811200526 0.92598676 1 9.991534045 -6.265411778 23.69424223 1.013570051 0.81499502 0.728972023 0.063471603 65.97533693 393525.2918 0.009296073 0.01454114 5.43E-07 6.265411778 -0.19857503 GAS(ph)PDMAPILEPVDRR ddPTM_HeLa_CUDC101_4h_R1 2 GASPDMAPILEPVDRR 16 1 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 GAS(1)PDMAPILEPVDRR;GAS(1)PDMAPILEPVDRR ; 216.34 1.98E-24 32024000 4653.5 4295.6 4156.1 3872.6 4291.8 4469.6 3933.5 3799.4 4661.5 4429 TRUE FALSE FALSE 4108.023784 4427.942344 4380.791338 4030.541367 3975.202464 4384.349827 4085.216413 4231.908338 4469.350997 4402.656111 0.933078505 1.005743404 0.995033731 0.915479489 0.902910053 0.995841991 0.927898139 0.9612171 1.015148784 1 12.10415845 -6.26496499 24.97294658 0.972806543 0.94092725 0.287440367 0.033733533 442.3233027 3133119.6 0.005512755 0.008635909 5.43E-07 6.26496499 -0.031879293 GS(ph)LDESSLGFGYPK ddPTM_HeLa_CUDC101_4h_R1 2 GSLDESSLGFGYPK 14 0 Q2KJU6;Q9BUZ4 Q2KJU6 TRAF4 TNF receptor-associated factor 4 1 0 GS(0.989)LDES(0.009)S(0.002)LGFGYPK;GS(0.999)LDESSLGFGYPK ; 188.92 3.12E-11 115090000 11881.6 9952.3 8877.9 8703.9 9298.3 9091.5 8644.9 7613.7 9850.1 8880.8 TRUE FALSE FALSE 10488.85686 10258.91857 9357.866128 9058.882663 8612.382934 8918.094785 8978.336689 8480.412832 9444.074709 8827.976607 1.188138271 1.162091725 1.060023893 1.02615617 0.975578359 1.010208248 1.017032225 0.960629282 1.069789277 1 13.10786709 -6.264141501 2.696511432 1.096938389 0.995404188 0.497748225 0.050765282 0.285538076 4.126833774 0.011940981 0.020047965 5.44E-07 6.264141501 -0.101534201 NPHNPTDLFDS(ph)VTNNT(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 NPHNPTDLFDSVTNNTR 17 0 B7ZL48;C9J7L3;Q460N3-2;Q460N3 B7ZL48 PARP15 Poly [ADP-ribose] polymerase 15 2 0 NPHNPTDLFDS(0.9)VT(0.199)NNT(0.9)R 72.175 0.028591 57969000 3572.7 3241.9 3166.2 2899.3 3031.4 3305.4 2903.5 3195 3276.6 3339.7 TRUE FALSE FALSE 3153.913522 3341.779096 3337.374349 3017.545986 2807.779661 3242.355002 3015.488968 3558.705885 3141.537161 3319.835316 0.950021077 1.0066099 1.005283103 0.90894448 0.845758718 0.976661398 0.908324866 1.071952536 0.946293072 1 11.69689596 -6.264061421 24.92117821 0.980515188 0.936981721 0.09982517 0.057875403 371.6656903 3532492.442 0.008547995 0.013424872 5.44E-07 6.264061421 -0.043533467 MQNGFGSPEPSLPGT(ph)PHSPAPPSGGTWK ddPTM_HeLa_CUDC101_4h_R1 1 MQNGFGSPEPSLPGTPHSPAPPSGGTWK 28 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 MQNGFGSPEPSLPGT(0.98)PHS(0.018)PAPPS(0.001)GGTWK 86.604 1.19E-05 0 1101.3 978.73 869.75 1184.5 1414.7 895.12 1102.8 987.8 1198.1 1074.4 TRUE FALSE FALSE 972.2072835 1008.883511 916.7713158 1232.80903 1310.340399 878.0470774 1145.335365 1100.247159 1148.713811 1068.009421 0.910298415 0.94463915 0.858392536 1.154305389 1.226899664 0.822134206 1.072401931 1.030184882 1.075565242 1 10.06070866 -6.263462823 24.99968938 0.948616039 1.05773411 0.176124258 0.110817497 224.4583791 2773188.325 0.015965392 0.025156484 5.45E-07 6.263462823 0.10911807 TCS(ph)FGGFDLTNR ddPTM_HeLa_CUDC101_4h_R1 2 TCSFGGFDLTNR 12 0 O94885;A0A1B0GWB9 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 0 T(0.021)CS(0.953)FGGFDLT(0.026)NR;T(0.146)CS(0.854)FGGFDLTNR ; 111.72 0.0053219 25263400 2549.9 1894.36 1985.63 2153.37 2576.73 2183.9 2105.5 1927.7 2381.4 2013.4 TRUE FALSE FALSE 2251.004587 1952.722986 2092.979164 2241.193736 2386.649761 2142.245746 2186.70984 2147.141576 2283.237684 2001.424207 1.12470139 0.975666717 1.045744903 1.119799455 1.192475714 1.070360665 1.092576892 1.072806838 1.14080647 1 10.96681127 -6.262952233 24.66885639 1.051921058 1.111081777 0.1726001 0.056491451 150.8472371 2459759.192 0.009247642 0.014587817 5.46E-07 6.262952233 0.059160719 MNKMVT(ph)S(ph)EEQMK ddPTM_HeLa_CUDC101_4h_R1 1 MNKMVTSEEQMK 12 1 Q69383;P61579;P61575;P61574;P61573;P61572;P61570;Q9UKH3;Q902F9;Q902F8;Q69384;O71037 Q69383 ERVK-6;ERVK-25;ERVK-8;HERVK_113;ERVK-9;ERVK-19 Endogenous retrovirus group K member 6 Rec protein;Endogenous retrovirus group K member 25 Rec protein;Endogenous retrovirus group K member 8 Rec protein;Endogenous retrovirus group K member 113 Rec protein;Endogenous retrovirus group K member 9 Rec protein;Endogenous retrovirus group K member 19 Rec protein;Endogenous retrovirus group K member 25 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 9 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 113 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 8 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 6 Env polyprotein;Surface protein;Transmembrane protein;Endogenous retrovirus group K member 19 Env polyprotein;Surface protein;Transmembrane protein 2 0 MNKMVT(1)S(1)EEQMK 52.482 0.0032656 0 1073.8 702.18 790.25 677.28 752.85 686.35 685.8 755.76 719.37 724.9 TRUE FALSE FALSE 947.9307918 723.8133335 832.9733054 704.9024059 697.3137554 673.2590173 712.2515357 841.7926635 689.7172641 720.5882626 1.315495743 1.004475608 1.155962911 0.978231873 0.967700685 0.934318601 0.988430665 1.168202019 0.957158616 1 9.493031342 -6.262932762 24.8104365 1.14010715 1.000061191 0.008162003 0.116944892 150.7742279 2504907.294 0.020484569 0.032335067 5.46E-07 6.262932762 -0.140045959 MPEGRSHCACSITSLTLLVSLTR ddPTM_HeLa_CUDC101_4h_R1 1 MPEGRSHCACSITSLTLLVSLTR 23 1 Q9BPW9-4 Q9BPW9-4 0 0 40.723 0.03262 1960500 972.05 1294.9 1411.2 1715.9 1705.8 1482.5 1768.2 1414.1 830.97 1003.3 FALSE FALSE TRUE 858.1077725 1334.794334 1487.493741 1785.881819 1579.966532 1454.223783 1836.400066 1575.075428 796.7170649 997.332327 0.860403047 1.338364653 1.491472502 1.790658711 1.58419264 1.458113553 1.841312085 1.579288453 0.79884813 1 9.961930503 -6.975394291 2.211069015 0.93344595 1.64052559 0.876392432 0.123549316 0.068550262 0.671607199 0.02027124 0.026705304 1.06E-07 6.975394291 0.70707964 S(ph)PQQTVPYVVPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SPQQTVPYVVPLSPK 15 0 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 2 0 S(1)PQQTVPY(0.001)VVPLS(0.999)PK 159.98 0.00063887 25063000 2278.4 2024.8 2072.9 1515.7 1836.7 1740.8 1506.6 1729.7 1593.8 2160.8 TRUE FALSE FALSE 2011.329406 2087.181688 2184.967244 1577.516797 1701.2103 1707.59714 1564.710067 1926.602056 1528.102889 2147.947466 0.936395996 0.97170984 1.017234955 0.734429879 0.792016717 0.794990179 0.728467568 0.896950269 0.711424704 1 11.06874299 -6.262814848 24.99999909 0.972583459 0.78644657 0.291682297 0.095206099 40.62115753 738317.0116 0.00714897 0.011297935 5.46E-07 6.262814848 -0.18613689 GSLLPTS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 GSLLPTSPR 9 0 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;Q9H0E9-3 H7C128 BRD8 Bromodomain-containing protein 8 1 0 GSLLPT(0.104)S(0.896)PR 86.882 0.03307 73749000 7563.7 7076.5 6641.1 6127.6 6953.2 6331.2 6363.4 5774 7295.4 7252.7 TRUE FALSE FALSE 6677.094552 7294.518577 7000.137954 6377.510014 6440.276289 6210.442908 6608.83847 6431.288821 6994.680524 7209.560618 0.92614445 1.011784069 0.970952091 0.884590664 0.893296642 0.86141767 0.91667701 0.892050038 0.970195119 1 12.81569562 -6.262808115 24.74018115 0.968877107 0.889749297 0.746914587 0.024927969 56.71140283 1025073.1 0.004924568 0.007781753 5.46E-07 6.262808115 -0.079127809 TSS(ph)PSSTGSVSLGR ddPTM_HeLa_CUDC101_4h_R1 1 TSSPSSTGSVSLGR 14 0 D6RAL0;F5GYR0;Q6H8Q1-4;Q6H8Q1-6;Q6H8Q1-8;Q6H8Q1-3;Q6H8Q1-7;Q6H8Q1-2;Q6H8Q1-5;Q6H8Q1;Q6H8Q1-9 D6RAL0 ABLIM2 Actin-binding LIM protein 2 1 0 T(0.227)S(0.019)S(0.645)PS(0.108)S(0.001)T(0.001)GSVSLGR 133.48 0.00072719 12482000 1172.6 832.72 1008.8 728.89 948.54 912.01 826.95 819.67 1018.3 902.14 TRUE FALSE FALSE 1035.149606 858.3751162 1063.338779 758.6172847 878.568094 894.6149288 858.8457385 912.9779196 976.325243 896.7740312 1.154303726 0.957181058 1.185737703 0.845940291 0.979698412 0.997592367 0.957705853 1.018069087 1.088708202 1 9.808600691 -6.262430016 24.99999802 1.071895553 0.962889707 0.377075397 0.075231521 88.26604051 2227498.033 0.012397428 0.019647484 5.46E-07 6.262430016 -0.109005846 YPGGS(ph)PIPADPR ddPTM_HeLa_CUDC101_4h_R1 2 YPGGSPIPADPR 12 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 Y(0.002)PGGS(0.998)PIPADPR;Y(0.002)PGGS(0.998)PIPADPR ; 83.137 0.030459 57980000 5009.2 4312.3 4397.9 3773.3 4637.9 4228.8 3860.1 3883.5 4174.4 4418.2 TRUE FALSE FALSE 4422.029169 4445.156852 4635.663777 3927.191484 4295.771357 4148.142686 4008.98535 4325.581942 4002.329465 4391.92035 1.006855502 1.012121463 1.055498144 0.894185498 0.978107756 0.944494061 0.912809211 0.984895353 0.911293727 1 12.10063618 -6.262128885 24.99996938 1.007690439 0.943271482 0.27492924 0.042358436 34.3445604 1245262.707 0.004152381 0.006574264 5.47E-07 6.262128885 -0.064418957 QGSPDQVSPVSEMT(ph)STSLYQDKQEGK ddPTM_HeLa_CUDC101_4h_R1 1 QGSPDQVSPVSEMTSTSLYQDKQEGK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QGS(0.003)PDQVS(0.018)PVS(0.024)EMT(0.761)S(0.184)T(0.008)S(0.002)LYQDKQEGK 91.238 7.86E-06 14830000 810.62 732.7 569.13 850.02 1087.9 781.66 724.91 581.71 805.52 614.05 TRUE FALSE FALSE 715.6003524 755.2736185 599.8988893 884.6874897 1007.647784 766.7511378 752.8700215 647.929515 772.3161247 610.3976033 1.172351183 1.23734696 0.982800204 1.449362653 1.650805604 1.256150309 1.233409203 1.061487646 1.265267295 1 9.253605487 -6.261817501 24.99913911 1.090911585 1.338556187 0.241586426 0.168172538 31.16530515 2060493.438 0.026132505 0.041486092 5.47E-07 6.261817501 0.247644602 AGSSPCLGSSSAASS(ph)PPPPASR ddPTM_HeLa_CUDC101_4h_R1 1 AGSSPCLGSSSAASSPPPPASR 22 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 AGSSPCLGSSSAAS(0.212)S(0.788)PPPPASR 218.05 9.00E-28 19322000 1510.8 1121.8 1294.3 960.37 1235 1171.9 969.2 1169.6 1218.8 1174.1 TRUE FALSE FALSE 1333.706314 1156.361328 1364.273773 999.5380397 1143.89651 1149.54796 1006.582369 1302.742536 1168.560548 1167.116401 1.142736331 0.990784919 1.168926914 0.856416754 0.980104906 0.984947139 0.862452424 1.116206177 1.001237363 1 10.18873274 -6.261697948 24.99999429 1.069072144 0.957104818 0.245785946 0.087529088 23.7253997 2293985.305 0.01312855 0.020865036 5.47E-07 6.261697948 -0.111967326 RTIQEVLEEQS(ph)EDEDREAK ddPTM_HeLa_CUDC101_4h_R1 1 RTIQEVLEEQSEDEDREAK 19 2 M0R0Q7;P18858-2;P18858;P18858-3 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 0 RTIQEVLEEQS(1)EDEDREAK 84.689 0.0041449 56166000 1015 992.3 1008 740.14 929.93 885.63 895.74 892.72 974.67 966.78 TRUE FALSE FALSE 896.0232386 1022.871587 1062.495529 770.3261084 861.3309166 868.7380833 930.2889919 994.3436363 934.4936901 961.0295496 0.932357636 1.064349777 1.105580499 0.801563395 0.896258515 0.903966047 0.96801289 1.034664997 0.972388092 1 9.908436981 -6.261133391 24.99999924 0.985376772 0.921201949 0.246681258 0.073605038 45.02058871 3678205.656 0.012036296 0.019165495 5.48E-07 6.261133391 -0.064174822 QENEDSS(ph)DATTPVPR ddPTM_HeLa_CUDC101_4h_R1 1 QENEDSSDATTPVPR 15 0 Q6P4R8-3;Q6P4R8;Q6P4R8-2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 QENEDS(0.103)S(0.438)DAT(0.356)T(0.103)PVPR 110.04 0.0025443 6639400 811.46 743.46 672.74 1066.6 987.36 1011.8 1005.8 645.66 777.96 1044.3 TRUE FALSE FALSE 716.3418889 766.3651214 709.1103593 1110.100558 914.5244199 992.5016008 1044.594043 719.1593246 745.8921595 1038.088457 0.690058621 0.738246453 0.683092423 1.069369908 0.880969645 0.956085769 1.00626689 0.692772682 0.718524664 1 10.01971367 -6.26112648 24.99999742 0.82780269 0.925539826 0.190621381 0.131845545 59.21638033 4731155.824 0.023744051 0.037793516 5.48E-07 6.26112648 0.097737136 DSLITPHVS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 DSLITPHVSR 10 0 P49792;A6NKT7;J3KNE0;J3KQ37;O14715;Q99666;Q7Z3J3;P0DJD1;P0DJD0;A0A1W2PNU4;F8VYC4;A0A286YES2;H7BZ48 P49792 RANBP2;RGPD3;RGPD8;RGPD5;RGPD4;RGPD2;RGPD1;RGPD6 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 1 1 0 DSLITPHVS(1)R 98.407 0.017982 33058000 2646.6 1923.7 2160.1 1735.2 2122.1 1951.3 1600.2 1850.4 2370.2 2115.4 TRUE FALSE FALSE 2336.36956 1982.966917 2276.88154 1805.968956 1965.556911 1914.082204 1661.92025 2061.042056 2272.499353 2102.817507 1.111066249 0.943004759 1.082776576 0.858832947 0.934725388 0.910246466 0.790330233 0.980133583 1.080692616 1 11.03810794 -6.260627292 24.9998877 1.045898666 0.892117105 0.574484855 0.0639302 41.5955774 1280501.325 0.010048587 0.016043873 5.49E-07 6.260627292 -0.153781561 MPLRDETLR ddPTM_HeLa_CUDC101_4h_R1 1 MPLRDETLR 9 1 Q5TGM7;A0A087WT25;O00294-2;O00294 Q5TGM7 TULP1 Tubby-like protein;Tubby-related protein 1 0 0 87.754 0.0030175 0 1399.5 617.39 317.8 654.31 542.23 655.79 661.55 311.66 284.39 595.18 FALSE FALSE TRUE 1235.452732 636.4110541 334.9812293 680.99559 502.2307732 643.2818984 687.0662051 347.1381146 272.6673238 591.6398429 2.088183793 1.075673083 0.566191127 1.151030645 0.848879228 1.087286304 1.161291305 0.586738907 0.460867075 1 9.208575401 -7.018443565 24.6519267 1.517446902 0.92060849 0 0.457261693 591.9596046 791220.9994 0.071807892 0.088837601 9.58E-08 7.018443565 -0.596838412 KPLSLAGDEETECQSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 KPLSLAGDEETECQSSPK 18 1 F5H1K3;Q86TN4-2;Q86TN4;Q86TN4-4 F5H1K3 TRPT1 tRNA 2-phosphotransferase 1 1 0 KPLSLAGDEETECQS(0.254)S(0.746)PK 124.1 4.33E-05 27655000 3221.9 3046.5 2580.8 2325.9 2459.7 2417.5 2452.1 2416.3 2591.8 2443.5 TRUE FALSE FALSE 2844.233766 3140.359054 2720.325854 2420.760255 2278.252831 2371.390215 2546.678318 2691.361825 2484.964907 2428.965953 1.170964855 1.292878992 1.119952238 0.996621732 0.937951736 0.976296194 1.048461925 1.10802781 1.023054647 1 11.24612655 -6.260459244 24.79120231 1.104744093 1.009154889 0.26847692 0.086765932 113.6730307 2875197.712 0.015927322 0.025437968 5.49E-07 6.260459244 -0.095589204 FASAENIPDLPYDYSSSLESVADET(ph)SPEREGR ddPTM_HeLa_CUDC101_4h_R1 1 FASAENIPDLPYDYSSSLESVADETSPEREGR 32 1 P50747 P50747 HLCS Biotin--protein ligase;Biotin--[methylmalonyl-CoA-carboxytransferase] ligase;Biotin--[propionyl-CoA-carboxylase [ATP-hydrolyzing]] ligase;Biotin--[methylcrotonoyl-CoA-carboxylase] ligase;Biotin--[acetyl-CoA-carboxylase] ligase 1 0 FAS(0.006)AENIPDLPY(0.016)DY(0.007)S(0.007)S(0.017)S(0.017)LES(0.146)VADET(0.611)S(0.174)PEREGR 45.137 0.037803 6780500 919.95 827.11 902.93 1038.1 1268.5 1140 1011.5 830.94 1149.4 1127.9 TRUE FALSE FALSE 812.1148556 852.5922787 951.745127 1080.438205 1174.925282 1118.256399 1050.513894 925.5308508 1102.021246 1121.191201 0.72433217 0.760434329 0.848869601 0.963652055 1.047925886 0.997382426 0.936962307 0.825488864 0.982902153 1 10.13081661 -6.260220372 23.84798022 0.855143752 0.960916964 0.180790674 0.095524244 87.11570998 1704261.783 0.018539631 0.029639386 5.49E-07 6.260220372 0.105773212 ELFQTPDHT(ph)EESTTDDK ddPTM_HeLa_CUDC101_4h_R1 1 ELFQTPDHTEESTTDDK 17 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(0.019)PDHT(0.969)EES(0.007)T(0.002)T(0.002)DDK 148.33 0.00065728 6083600 2201.5 1448.6 1531.9 1601.2 1500.5 1483.5 1358.6 535.05 1677.3 2538 TRUE FALSE FALSE 1943.443507 1493.229649 1614.719148 1666.503857 1389.811104 1455.204709 1411.001657 595.9579293 1608.160984 2522.903863 0.770320081 0.591869421 0.64002405 0.660549885 0.550877552 0.576797527 0.559276823 0.23621904 0.637424599 1 11.30086952 -6.26001312 0.135264349 1.259445492 5.05E-23 0.41788552 0.138115766 2.764211236 0.165296972 0.511249994 0.964892274 5.50E-07 6.26001312 -1.259445492 SQDKS(ph)LLDGEGPQAVGGQDVAFSR ddPTM_HeLa_CUDC101_4h_R1 1 SQDKSLLDGEGPQAVGGQDVAFSR 24 1 A1X283 A1X283 SH3PXD2B SH3 and PX domain-containing protein 2B 1 0 S(0.345)QDKS(0.655)LLDGEGPQAVGGQDVAFSR 83.332 4.33E-05 11371000 933.19 802.23 731.89 1108.1 1189.9 881.55 1035.3 939.31 857.04 989.81 TRUE FALSE FALSE 823.8028828 826.9457554 771.4581872 1153.293108 1102.123448 864.7359025 1075.231868 1046.237254 821.7124484 983.9225661 0.837263938 0.840458166 0.784063923 1.17213808 1.120132301 0.878865809 1.092801309 1.063332918 0.835139346 1 9.942400971 -6.259729816 24.99965425 0.90419944 1.059645034 0.524374997 0.093290075 136.3126392 1993350.301 0.015923446 0.025530993 5.50E-07 6.259729816 0.155445594 AMLGTHT(ph)MEVTVYHR ddPTM_HeLa_CUDC101_4h_R1 2 AMLGTHTMEVTVYHR 15 0 F8W1D1;H0YIJ2;P40967-3;P40967-4;P40967-5;P40967;P40967-2 F8W1D1 PMEL Melanocyte protein PMEL;M-alpha;M-beta 1 0 AMLGT(0.296)HT(0.408)MEVT(0.296)VYHR;AMLGT(0.216)HT(0.458)MEVT(0.326)VYHR ; 116.51 0.0063463 27017000 10185.5 8306.3 8585.6 7554.3 8844.1 8603.8 7003 8005.1 9209.4 8611.6 TRUE FALSE FALSE 8991.57113 8562.207258 9049.763506 7862.397006 8191.688363 8439.69685 7273.108056 8916.368226 8829.784634 8560.37782 1.050370827 1.00021371 1.057168702 0.918463784 0.956930703 0.985902378 0.849624655 1.041585829 1.03147137 1 13.06345876 -6.259690472 24.99945254 1.024523542 0.947221098 0.383938909 0.048807484 120.1665334 1717696.016 0.006896925 0.011053039 5.50E-07 6.259690472 -0.077302443 NCLLMQLEEATRLT(ph)S(ph)Y(ph)LQSQLK ddPTM_HeLa_CUDC101_4h_R1 1 NCLLMQLEEATRLTSYLQSQLK 22 1 Q9ULE0;Q9ULE0-2 Q9ULE0 WWC3 Protein WWC3 3 0 NCLLMQLEEAT(0.339)RLT(0.876)S(0.876)Y(0.868)LQS(0.042)QLK 44.729 0.0030134 0 277.93 280.4 250.01 308.05 333.83 347.06 379 153.34 377.5 298.35 TRUE FALSE FALSE 245.3514667 289.0387916 263.5262968 320.6136105 309.204026 340.4404087 393.618157 170.7956058 361.9392902 296.5754009 0.827281919 0.974587881 0.888564244 1.081052608 1.042581499 1.147905078 1.327211076 0.575892691 1.220395519 1 8.21225513 -6.259487 24.71686702 0.919434517 1.057868142 0 0.205737478 244.8335562 3099551.273 0.026294835 0.042201033 5.50E-07 6.259487 0.138433625 VDEEPTTLPS(ph)GEAKPR ddPTM_HeLa_CUDC101_4h_R1 1 VDEEPTTLPSGEAKPR 16 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;A0A0A0MT65 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 0 VDEEPTTLPS(1)GEAKPR 74.776 0.013828 16234000 2479.3 2598.1 2272.6 2964.2 3505.9 3361.3 3404.4 1734.3 3158.7 2651.4 TRUE FALSE FALSE 2188.680212 2678.144381 2395.46363 3085.092888 3247.276742 3297.188803 3535.708848 1931.725702 3028.497049 2635.629355 0.830420335 1.016130882 0.908877277 1.170533665 1.232068817 1.251006253 1.341504579 0.732927677 1.149060297 1 11.36393178 -6.259381982 23.83885379 0.925880028 1.167150162 0.142516103 0.174085158 80.76614772 935822.2915 0.023493137 0.037699771 5.50E-07 6.259381982 0.241270134 MPSQAFLQFQGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 MPSQAFLQFQGKK 13 1 A0A1B0GUI1;Q6GYQ0-3;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 0 1 MPSQAFLQFQGK(1)K 53.751 0.037851 0 0 53.567 408.98 485.61 560.05 523.64 926.29 445.87 0 0 FALSE TRUE FALSE 0 55.21733578 431.0906959 505.4152748 518.7362273 513.6524394 962.0173156 496.6260385 0 0 0 SVS(ph)PSPVPLLFQPDQNAPPIR ddPTM_HeLa_CUDC101_4h_R1 2 SVSPSPVPLLFQPDQNAPPIR 21 0 Q02241-2;Q02241-3 Q02241-2 KIF23 Kinesin-like protein KIF23 1 0 S(0.025)VS(0.742)PS(0.234)PVPLLFQPDQNAPPIR;S(0.039)VS(0.934)PS(0.026)PVPLLFQPDQNAPPIR ; 159.5 2.70E-07 423690000 5498.2 5445.1 5125.6 4594 5299.2 5319.4 4412.9 4476.3 4778.4 5593.8 TRUE FALSE FALSE 4853.709331 5612.857077 5402.70544 4781.363177 4908.288573 5217.941308 4583.107031 4985.863898 4581.432329 5560.527829 0.872886438 1.009410842 0.971617373 0.859875775 0.882701917 0.938389568 0.82422158 0.896652989 0.823920403 1 12.44100612 -6.259350179 24.92510438 0.946919349 0.880602141 0.165522211 0.059289227 202.0619992 2410690.555 0.008672145 0.01393824 5.50E-07 6.259350179 -0.066317208 KPVTVSPT(ph)T(ph)PTSPTEGEAS ddPTM_HeLa_CUDC101_4h_R1 1 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 2 0 KPVT(0.006)VS(0.122)PT(0.731)T(0.446)PT(0.402)S(0.199)PT(0.037)EGEAS(0.057) 79.347 0.0049828 32622000 1347.7 976.18 968.76 1143.4 1195.5 1347.1 1042.1 819.77 1138 1018 TRUE FALSE FALSE 1189.724649 1006.254949 1021.134096 1190.032794 1107.310347 1321.406312 1082.294146 913.0893032 1091.091158 1011.944891 1.175681265 0.994377221 1.009080737 1.175985773 1.094239772 1.305808571 1.06951886 0.902311293 1.078212033 1 9.982915009 -6.258131391 24.98424262 1.071977588 1.117397775 0.050255267 0.106758601 956.4542999 7223814.087 0.017766605 0.028611144 5.52E-07 6.258131391 0.045420187 S(ph)FVDAEVDVTR ddPTM_HeLa_CUDC101_4h_R1 4 SFVDAEVDVTR 11 0 A0A2R8YHB3;A0A1B0GUB2;A0A3B3IRP5;Q6P1J9 A0A2R8YHB3 CDC73 Parafibromin 1 0 S(1)FVDAEVDVTR;S(1)FVDAEVDVTR;S(1)FVDAEVDVTR;S(1)FVDAEVDVTR ;;; 184.34 1.11E-10 21259100 2473.85 2410.59 2253.61 1826.58 2021.56 2147.79 1742.8 2069.09 2285.27 2276.98 TRUE FALSE FALSE 2183.869053 2484.857421 2375.446973 1901.075828 1872.433546 2106.824484 1810.02038 2304.626842 2191.070203 2263.436422 0.964846652 1.097825146 1.049486944 0.839906882 0.827252548 0.930807892 0.79967803 1.018198179 0.968028164 1 11.14429907 -6.257526433 24.99924689 0.99788639 0.878070502 0.472759581 0.068730843 246.316718 1573680.143 0.010043007 0.016255207 5.53E-07 6.257526433 -0.119815888 TPPGPCCS(ph)PGVGWAQR ddPTM_HeLa_CUDC101_4h_R1 2 TPPGPCCSPGVGWAQR 16 0 H3BSW6;Q2VPK5-3;Q2VPK5;Q2VPK5-5 H3BSW6 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 1 0 T(0.002)PPGPCCS(0.998)PGVGWAQR;T(0.145)PPGPCCS(0.855)PGVGWAQR ; 120.54 0.00055178 17301200 376.89 290.36 282.497 391.96 409.01 297.977 342.28 377.04 418.06 369.6 TRUE FALSE FALSE 332.7115255 299.3056474 297.7696423 407.945823 378.8381472 292.2935852 355.4818543 419.9607096 400.8273899 367.4016028 0.905579951 0.814655258 0.810474533 1.110353956 1.031128183 0.795569706 0.967556624 1.143056281 1.090978882 1 8.52121411 -6.257518118 24.96960251 0.931601905 0.99651381 0.111343148 0.116599447 763.0390547 4858830.62 0.017224315 0.027861676 5.53E-07 6.257518118 0.064911905 VLAPILPDNFS(ph)TPTGSR ddPTM_HeLa_CUDC101_4h_R1 1 VLAPILPDNFSTPTGSR 17 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 VLAPILPDNFS(0.478)T(0.478)PT(0.042)GS(0.001)R 97.734 0.0039691 87476000 2513.2 2397 1916.1 2229.7 2412.5 2161.8 2134.4 734.31 2658.7 2502.3 TRUE FALSE FALSE 2218.606506 2470.848729 2019.690162 2320.636804 2234.534681 2120.567267 2216.724523 817.9008822 2549.107261 2487.416208 0.891932158 0.993339482 0.811963095 0.932950745 0.89833566 0.852518071 0.891175556 0.328815451 1.024801258 1 11.28043221 -4.243172144 3.590912017 0.930372852 0.247114115 0.886465106 0.063733843 0.073972832 1.6388125 0.008911961 0.138185686 5.71E-05 4.243172144 -0.683258737 down MQASIEK(ac)GGSLPK ddPTM_HeLa_CUDC101_4h_R1 1 MQASIEKGGSLPK 13 1 P06748;P06748-2 P06748 NPM1 Nucleophosmin 0 1 MQASIEK(1)GGSLPK 244.72 8.67E-93 0 57.481 240.2 272.32 60.571 164.02 160.36 163.58 270.41 309.73 308.87 FALSE TRUE FALSE 50.74316432 247.6002773 287.0424429 63.04134719 151.9205714 157.3014002 169.8893354 301.1923814 296.9627983 307.0328275 0.165269508 0.80642933 0.934891703 0.205324452 0.494802372 0.512327628 0.55332629 0.98097778 0.967202109 1 8.262249104 -9.66440257 1.523268656 0.999272692 0.516815855 0.243597855 0.264073737 0.418454748 1.751643547 0.20140836 0.045496444 2.17E-10 9.66440257 -0.482456837 VPSS(ph)DEEVVEEPQSR ddPTM_HeLa_CUDC101_4h_R1 1 VPSSDEEVVEEPQSR 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 VPS(0.121)S(0.879)DEEVVEEPQSR 317.91 3.86E-145 20668000 897.92 877.46 837.14 710.17 914.04 685.28 681.61 814.61 657.01 877.26 TRUE FALSE FALSE 792.6671788 904.4935026 882.3983206 739.1338022 846.6130902 672.2094258 707.899926 907.3419096 629.9277697 872.0420185 0.908978194 1.037213211 1.011875921 0.847589665 0.97083979 0.770845225 0.811772725 1.040479576 0.722359423 1 9.768253841 -6.257137759 24.86513745 0.966956548 0.88211326 0.006078502 0.110773371 423.5503541 2448289.732 0.012153572 0.019696604 5.53E-07 6.257137759 -0.084843287 MQHLIAR ddPTM_HeLa_CUDC101_4h_R1 2 MQHLIAR 7 0 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 114.19 0.012146 36697000 27022 13794.9 7807.7 16930.3 13318.6 12312.6 12450.8 9485.4 5816.4 3275.6 FALSE FALSE TRUE 23854.52212 14219.90452 8229.807879 17620.79081 12336.11341 12077.75767 12931.03153 10565.17959 5576.64553 3256.116586 7.326065114 4.367136171 2.527491772 5.411597021 3.788596965 3.709252219 3.971304831 3.244717846 1.712667647 1 11.66893664 -3.426719964 1.076689855 4.051899426 5.22E-08 0 1.730574489 55.88435593 13.65518427 0.353172104 398.9678641 0.000374352 3.426719964 -4.051899373 MQNDTAENETTEKEEK ddPTM_HeLa_CUDC101_4h_R1 3 MQNDTAENETTEKEEK 16 1 E9PGZ1;Q05682-5;Q05682-4;C9J813;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682 E9PGZ1;E7EX44;Q05682 CALD1 Caldesmon 0 0 ;; ;; 153.2 0.00016747 27848700 3533.67 2936.69 2963.91 3156.91 3716.97 3448.22 2999.3 3181.56 3754.79 3704.53 FALSE FALSE TRUE 3119.458559 3027.165938 3124.14794 3285.662435 3442.776528 3382.450949 3114.984006 3543.73593 3600.015967 3682.495291 0.847104562 0.822042039 0.848377986 0.892238055 0.934903172 0.918521459 0.845889474 0.962319202 0.977602327 1 11.84646796 -9.357408874 1.101551814 0.999447862 0.880257639 0.484698233 0.042924141 0.328416354 0.718094594 0.029690191 0.007870996 4.39E-10 9.357408874 -0.119190223 S(ph)PPVDCPR ddPTM_HeLa_CUDC101_4h_R1 1 SPPVDCPR 8 0 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 S(1)PPVDCPR 108.57 0.012259 5152600 1058.5 951.88 886.2 708.54 818.72 921.16 662.42 614.24 1016.1 838.58 TRUE FALSE FALSE 934.4242346 981.2062945 934.1106526 737.4373238 758.3246567 903.5904078 687.9697613 684.1625988 974.2159279 833.5920889 1.120961016 1.177082062 1.120584834 0.884650099 0.909707118 1.083971909 0.82530745 0.820740273 1.168696226 1 9.703197776 -6.256989682 24.97394627 1.073804115 0.910673163 0.577333843 0.086957419 279.2885292 1567508.086 0.014002992 0.022718012 5.53E-07 6.256989682 -0.163130952 MQPFSIPVQITLQGSRR ddPTM_HeLa_CUDC101_4h_R1 1 MQPFSIPVQITLQGSRR 17 1 Q9NPA1-5;Q9NPA1-2 Q9NPA1-5 0 0 46.319 0.04028 9929300 2479 2191.5 2495 2355.7 2697.8 2181 2210.2 2319 2382.6 2499.9 FALSE FALSE TRUE 2188.415378 2259.017517 2629.887247 2451.775628 2498.788669 2139.401059 2295.448154 2582.985586 2284.38822 2485.030484 0.880639249 0.909050224 1.058291745 0.986617929 1.005536425 0.860915419 0.92371026 1.039418069 0.919259637 1 11.27904783 -4.251220464 23.65475106 0.948404737 1.039418178 0.173655609 0.058920352 1053.021936 2437430.062 0.009173818 0.159660061 5.61E-05 4.251220464 0.091013441 DS(ph)SY(ph)PY(ph)SQSDQSMNR ddPTM_HeLa_CUDC101_4h_R1 1 DSSYPYSQSDQSMNR 15 0 O95429;O95429-2 O95429 BAG4 BAG family molecular chaperone regulator 4 3 0 DS(0.588)S(0.609)Y(0.692)PY(0.537)S(0.405)QS(0.163)DQS(0.006)MNR 41.967 0.0033255 0 493.43 505.69 413.5 265.82 196.96 459.11 331.91 277.14 408.88 308.17 TRUE FALSE FALSE 435.5908834 521.2697095 435.8550608 276.6612886 182.4306532 450.3532417 344.7118799 308.6884974 392.0257933 306.3369911 1.421933674 1.701621824 1.422796049 0.903127264 0.595522769 1.470123605 1.125270176 1.007676207 1.279720715 1 8.258975777 -6.256548179 24.92588091 1.265220036 1.027559815 0.255935283 0.268017297 683.9656679 3485530.72 0.047206454 0.076619971 5.54E-07 6.256548179 -0.237660221 MQQNIQELEEQLEEEESAR ddPTM_HeLa_CUDC101_4h_R1 13 MQQNIQELEEQLEEEESAR 19 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;;;;;;;;;;;; ;;;;;;;;;;;; 225.31 1.02E-32 62516700 18601.189 14886.76 13614.52 13535.02 16081.353 15997.7 14638.89 15166.92 15738.91 15397.81 FALSE FALSE TRUE 16420.78582 15345.40343 14350.56213 14087.03662 14895.06363 15692.57053 15203.51689 16893.46087 15090.14547 15306.22314 1.072817616 1.002559762 0.937563892 0.920347005 0.973137755 1.025241196 0.993289902 1.103698849 0.985883018 1 13.90183072 -10.16765455 3.490492337 0.999385185 1.018058056 0 0.054308149 1.485038874 33.4451495 0.057972008 0.008856704 6.80E-11 10.16765455 0.018672871 MQQQLDEYQELLDIK ddPTM_HeLa_CUDC101_4h_R1 5 MQQQLDEYQELLDIK 15 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;;; ;;;; 205.88 1.32E-22 64506400 6083.84 5635.49 5395.97 5160.83 6621.68 5905.23 5404.08 5164.38 6361.64 5604.46 FALSE FALSE TRUE 5370.701498 5809.112767 5687.69246 5371.310954 6133.211859 5792.597577 5612.517176 5752.272144 6099.410507 5571.124423 0.964024691 1.042718189 1.02092361 0.964134086 1.100892996 1.039753762 1.007429874 1.032515469 1.094825756 1 12.44375282 -7.25732314 24.94931708 0.983011659 1.029163011 0 0.048345441 320.1204923 1940312.387 0.005635146 0.006778684 5.53E-08 7.25732314 0.046151352 LRLS(ph)PSPTSQR ddPTM_HeLa_CUDC101_4h_R1 1 LRLSPSPTSQR 11 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LRLS(0.923)PS(0.063)PT(0.014)SQR 136.27 0.008063 2148900000 4724.7 3989.3 3907.1 3441 3773.8 3530.9 3633.5 3892.7 4035.9 3724.6 TRUE FALSE FALSE 4170.877828 4112.205605 4118.329644 3581.338853 3495.414292 3463.553965 3773.645312 4335.829233 3869.538494 3702.445914 1.126519583 1.110672701 1.112326754 0.967289985 0.944082473 0.935477262 1.019230368 1.171071593 1.045130323 1 11.85426295 -6.256515503 24.65662533 1.069477808 1.000569175 0.194321114 0.070824649 529.5372751 2651687.679 0.012286713 0.01995571 5.54E-07 6.256515503 -0.068908633 S(ph)RGPTPPAMGPR ddPTM_HeLa_CUDC101_4h_R1 1 SRGPTPPAMGPR 12 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 S(0.991)RGPT(0.009)PPAMGPR 91.712 0.010819 31057000 1381.7 1080.3 1191.3 767.47 741 1057.5 811.62 999.92 1389.4 1025.1 TRUE FALSE FALSE 1219.739221 1113.582763 1255.705281 798.7707439 686.3379063 1037.329949 842.9244553 1113.746851 1332.128344 1019.00266 1.196993167 1.092816345 1.232288522 0.783875033 0.673538876 1.017985517 0.827205354 1.092977374 1.307286425 1 9.992942102 -6.255580081 24.9718931 1.104863817 0.872526455 0.487777793 0.140038372 354.916947 1512628.34 0.020075689 0.032709874 5.55E-07 6.255580081 -0.232337362 RASGQAFELILS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 RASGQAFELILSPR 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 RASGQAFELILS(1)PR;RASGQAFELILS(1)PR ; 83.891 0.01129 55984000 3078.7 2815.3 2506.9 2890.5 3000.7 3470.5 2795.3 2315.26 3457.7 2750.9 TRUE FALSE FALSE 2717.819453 2902.036056 2642.430597 3008.387084 2779.344339 3404.305995 2903.115657 2578.81984 3315.172142 2734.537524 0.993886326 1.061252965 0.966317183 1.100144744 1.016385518 1.24492934 1.061647767 0.943055203 1.212333754 1 11.41708114 -6.255467217 24.93763102 1.000770847 1.078969465 0 0.100166137 579.2108944 2418577.34 0.010807509 0.017614973 5.55E-07 6.255467217 0.078198618 KGDVVHCWYTGTLQDGTVFDTNIQT(ph)SAK ddPTM_HeLa_CUDC101_4h_R1 1 KGDVVHCWYTGTLQDGTVFDTNIQTSAK 28 1 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 1 0 KGDVVHCWYTGTLQDGTVFDT(0.002)NIQT(0.6)S(0.399)AK 111.98 1.77E-10 75734000 1409.5 1414.7 1174.3 1600.2 1752.9 1664.1 1263.2 1175.4 1357.2 1593.5 TRUE FALSE FALSE 1244.280547 1458.28523 1237.78621 1665.463073 1623.592059 1632.360065 1311.922047 1309.202785 1301.255642 1584.021791 0.785519842 0.92062195 0.781419938 1.051414243 1.024980886 1.030516167 0.828222222 0.826505539 0.821488472 1 10.62937647 -6.255303217 24.97050805 0.890138745 0.953813128 0.15046986 0.096400708 1169.439645 4758919.468 0.017316104 0.028212938 5.56E-07 6.255303217 0.063674383 EGS(ph)QGELTPANSQSR ddPTM_HeLa_CUDC101_4h_R1 1 EGSQGELTPANSQSR 15 0 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QQX0 C9JFE4 GPS1 COP9 signalosome complex subunit 1 1 0 EGS(0.996)QGELT(0.002)PANS(0.003)QSR 81.713 0.01822 5785500 2402.2 1592.5 2079.1 1451.4 1584 1707.5 1864 1652.2 1948.3 1861.7 TRUE FALSE FALSE 2120.617757 1641.563037 2191.502435 1510.594365 1467.151476 1674.932282 1935.895104 1840.27977 1867.990249 1850.626526 1.145891798 0.887030967 1.184194868 0.816261058 0.792786365 0.905062291 1.04607552 0.994409052 1.009382619 1 10.85379806 -6.255124192 24.90386163 1.061971837 0.911539283 0.289503046 0.103624822 463.9282457 1829493.842 0.016572354 0.02705026 5.56E-07 6.255124192 -0.150432554 S(ph)APPMEGAR ddPTM_HeLa_CUDC101_4h_R1 1 SAPPMEGAR 9 0 Q86YD1 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 0 S(1)APPMEGAR 115.7 0.0011207 0 1354.2 864.38 976.06 1083.4 909.91 838.21 756.32 693.7 1114.4 1336.6 TRUE FALSE FALSE 1195.462729 891.0105233 1028.828756 1127.585735 842.7877521 822.2225408 785.4915157 772.668004 1068.46396 1328.649844 0.89975755 0.670613501 0.774341532 0.848670355 0.634318934 0.618840656 0.59119528 0.581543744 0.804172721 1 10.37574523 -6.254963526 0.280428074 1.033583335 0.458693539 0.580524525 0.088824712 0.760398437 0.123504691 0.05520318 0.154648309 5.56E-07 6.254963526 -0.574889796 MRALCADEYRARCR ddPTM_HeLa_CUDC101_4h_R1 1 MRALCADEYRARCR 14 3 O14654 O14654 IRS4 Insulin receptor substrate 4 0 0 92.538 0.024012 18987000 2956.2 2991.3 2808.6 3250.6 2773.6 3400.8 3124 2047 3058.9 1508.4 FALSE FALSE TRUE 2609.678717 3083.458407 2960.441412 3383.173518 2568.997054 3335.935406 3244.493726 2280.022206 2932.810847 1499.42797 1.740449538 2.056423163 1.974380545 2.256309464 1.713318082 2.224805375 2.163820998 1.520594688 1.955953141 1 10.5501965 -8.536956482 0.60106373 0.991452917 2.017194831 0.014339705 0.362601083 0.284130156 0.20875201 0.139568862 0.055536704 2.90E-09 8.536956482 1.025741914 MRDELHVRGGR ddPTM_HeLa_CUDC101_4h_R1 1 MRDELHVRGGR 11 2 O94874-2 O94874-2 UFL1 E3 UFM1-protein ligase 1 0 0 85.958 0.032205 29880000 7423.4 5754.1 5083.8 4761.6 9169.9 7712.9 6468.4 6884 7216.6 6305.1 FALSE FALSE TRUE 6553.240305 5931.377001 5358.645606 4955.798629 8493.454746 7565.789283 6717.888355 7667.646734 6919.128693 6267.596985 1.045574615 0.946355839 0.854976097 0.790701547 1.355137346 1.207127596 1.07184434 1.223379032 1.103952394 1 12.6136967 -5.754052945 24.99999757 0.987453653 1.203674032 0.569270524 0.107600523 115.2787647 390166.8138 0.016025697 0.03154738 1.76E-06 5.754052945 0.216220379 GAES(ph)ENEEESPR ddPTM_HeLa_CUDC101_4h_R1 2 GAESENEEESPR 12 0 Q9UEG4 Q9UEG4 ZNF629 Zinc finger protein 629 1 0 GAES(1)ENEEESPR;GAES(1)ENEEESPR ; 181.71 1.56E-10 18907000 2907.9 2084.22 1924.67 1856.25 1586.6 1675.71 1443.65 1037.69 2208.7 2549 TRUE FALSE FALSE 2567.04037 2148.432348 2028.723482 1931.955898 1469.559679 1643.748624 1499.332064 1155.816435 2117.656451 2533.838435 1.013103415 0.847896345 0.800652265 0.762462149 0.579973711 0.648718798 0.591723625 0.456152381 0.835750387 1 11.30710882 -6.254642114 0.686323495 1.015057616 0.525261501 0.813463777 0.075032711 0.120177512 0.11003086 0.0106718 0.027351541 5.56E-07 6.254642114 -0.489796115 MREDYDSVEQDGDEPGPQR ddPTM_HeLa_CUDC101_4h_R1 4 MREDYDSVEQDGDEPGPQR 19 1 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 0 0 ;;; ;;; 248.75 2.30E-56 80523000 5065.47 4534.32 3768.18 4560.26 4725.99 4000.77 4073.08 4904.61 4932.79 4698.01 FALSE FALSE TRUE 4471.703285 4674.017025 3971.899209 4746.247114 4377.363133 3924.461978 4230.18006 5462.930977 4729.458308 4670.066028 0.957524639 1.000846026 0.850501724 1.016312636 0.937323607 0.840344003 0.905807334 1.169775961 1.012717653 1 12.18922723 -8.812370816 0.674735441 1.000387758 0.951793726 0.034728756 0.089053401 2.316979397 1.974243296 0.059579639 0.019447423 1.54E-09 8.812370816 -0.048594031 SSS(ph)LESLQTAVAEVR ddPTM_HeLa_CUDC101_4h_R1 1 SSSLESLQTAVAEVR 15 0 R4GN62;A0A087WZG6;A0A087X1S9;Q8TEW8-5;Q8TEW8-2;Q8TEW8 R4GN62 PARD3B Partitioning defective 3 homolog B 1 0 S(0.088)S(0.009)S(0.903)LESLQTAVAEVR 242.1 4.37E-44 11253000 2261.6 1755.1 2162.2 1449.7 1670.1 1992.6 1844.1 1763.3 2165.5 1937.6 TRUE FALSE FALSE 1996.498676 1809.172551 2279.095072 1508.825032 1546.90005 1954.594475 1915.227555 1964.026944 2076.237173 1926.075069 1.036563272 0.939305316 1.183284654 0.783367718 0.803135908 1.014807006 0.994368073 1.019704256 1.077962748 1 10.91144822 -6.254412771 24.99645859 1.021936685 0.925470005 0.274592644 0.096675763 717.1971951 2551355.918 0.014349826 0.023479669 5.57E-07 6.254412771 -0.09646668 DEILPT(ph)TPISEQK ddPTM_HeLa_CUDC101_4h_R1 4 DEILPTTPISEQK 13 0 E9PL09;P23396;P23396-2;E9PPU1;H0YEU2;E9PSF4 E9PL09 RPS3 40S ribosomal protein S3 1 0 DEILPT(0.697)T(0.3)PIS(0.002)EQK;DEILPT(0.491)T(0.491)PIS(0.017)EQK;DEILPT(0.92)T(0.08)PISEQK;DEILPT(0.901)T(0.098)PISEQK ;;; 219.84 7.20E-32 2536429300 21055.1 19504.9 17638.8 17466.9 17311 18639.6 16543.5 17304.6 19515 19443.9 TRUE FALSE FALSE 18587.0531 20105.82285 18592.40688 18179.27568 16034.00202 18284.08069 17181.58834 19274.48572 18710.58344 19328.24682 0.961652305 1.040230034 0.961929297 0.940554819 0.829563186 0.945977194 0.88893672 0.997218522 0.968043487 1 14.23842316 -6.254368089 3.27123476 0.985966794 0.913561161 0.356469675 0.045164498 0.199594969 4.456038363 0.006624723 0.01097415 5.57E-07 6.254368089 -0.072405633 GLAGPPAS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 5 GLAGPPASPGK 11 0 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK;GLAGPPAS(1)PGK ;;;; 117.86 0.0047359 855685000 19772.8 17707.5 16176.1 16087.8 16747.7 16007.6 15219.5 17174.3 16977.7 17239 TRUE FALSE FALSE 17455.06236 18253.04709 17050.6289 16743.93002 15512.25554 15702.2817 15806.52121 19129.35289 16277.87202 17136.46166 1.018591977 1.065158458 0.99499122 0.977093775 0.905219283 0.916308279 0.922391187 1.116295375 0.949896912 1 14.06478163 -6.254333679 3.317918201 1.013615684 0.957493398 0.078149985 0.061769874 0.336178614 7.76502493 0.008721779 0.014432574 5.57E-07 6.254333679 -0.056122285 TPAPPEPGS(ph)PAPGEGPSGR ddPTM_HeLa_CUDC101_4h_R1 2 TPAPPEPGSPAPGEGPSGR 19 0 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 0 TPAPPEPGS(0.999)PAPGEGPS(0.001)GR;TPAPPEPGS(1)PAPGEGPSGR ; 187.04 1.71E-11 109303000 4435 3714.1 3497.2 3260.4 3302.1 3202.3 3006.9 2976 3561.6 3873.3 TRUE FALSE FALSE 3915.136023 3828.527019 3686.26921 3393.373205 3058.510662 3141.221463 3122.87714 3314.775811 3414.789341 3850.261439 1.016849397 0.994355079 0.957407508 0.881335789 0.794364411 0.815846278 0.811081842 0.860922268 0.886898044 1 11.9107407 -6.254219626 1.823135791 1.007316471 0.819161961 0.721486662 0.042222855 0.046343859 0.300444968 0.00291103 0.005189525 5.57E-07 6.254219626 -0.188154509 MRSPGGILLQALPR ddPTM_HeLa_CUDC101_4h_R1 1 MRSPGGILLQALPR 14 1 Q6YI46-4;Q6YI46 Q6YI46-4 TMEM64 Transmembrane protein 64 0 0 50.222 0.037954 155710 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 EEVVEQGELNATEEVWIPGEGHPES(ph)PEPK ddPTM_HeLa_CUDC101_4h_R1 1 EEVVEQGELNATEEVWIPGEGHPESPEPK 29 0 P48681 P48681 NES Nestin 1 0 EEVVEQGELNATEEVWIPGEGHPES(1)PEPK 118.74 1.28E-13 7887800 4019.5 3678.6 3541 2893.7 3198.1 3327.3 3090.1 2757.7 4088.2 3474.3 TRUE FALSE FALSE 3548.340303 3791.933306 3732.437171 3011.717594 2962.182535 3263.837296 3209.286192 3071.625421 3919.682666 3453.634709 1.027422007 1.097954366 1.080727258 0.87204289 0.857700013 0.945044155 0.929248882 0.889389203 1.134944195 1 11.75389978 -6.253963347 24.98375888 1.025627168 0.900681579 0.70345657 0.051436049 260.8821269 871827.327 0.006551381 0.010724033 5.57E-07 6.253963347 -0.124945588 MRTRHVMLPK ddPTM_HeLa_CUDC101_4h_R1 1 MRTRHVMLPK 10 2 Q9BZU3 Q9BZU3 CKS1B Cyclin-dependent kinases regulatory subunit 0 0 49.06 0.038416 8511200 8869 7915.6 8338.4 8551.7 8419.9 7479.9 6884.2 7965.6 7956 7798.6 FALSE FALSE TRUE 7829.389265 8159.470254 8789.199126 8900.47529 7798.780752 7337.23337 7149.7259 8872.371706 7628.050313 7752.21358 1.009955309 1.052534243 1.13376638 1.148120495 1.006006952 0.946469456 0.922281852 1.144495261 0.983983508 1 12.9203926 -4.224060396 23.14124173 1.01822719 1.144496086 0.217676355 0.068902722 9928.694067 6146524.28 0.010078216 3.048946797 5.97E-05 4.224060396 0.126268896 AVGAQASVGS(ph)RSEGEGEAASADDGSLNTSGAGPK ddPTM_HeLa_CUDC101_4h_R1 1 AVGAQASVGSRSEGEGEAASADDGSLNTSGAGPK 34 1 M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8;M0R2I2 M0QXG9 BABAM1 BRISC and BRCA1-A complex member 1 1 0 AVGAQAS(0.134)VGS(0.377)RS(0.377)EGEGEAAS(0.042)ADDGS(0.061)LNT(0.004)S(0.005)GAGPK 47.044 0.0029368 0 505.35 425.71 445.45 565.93 761.85 477.13 492.62 559.7 588.15 567.52 TRUE FALSE FALSE 446.1136391 438.8256205 469.5323744 589.0110716 705.6498433 468.0295402 511.6205184 623.4139856 563.9062081 564.1443658 0.790779216 0.777860504 0.83229117 1.044078621 1.250832032 0.829627252 0.906896443 1.105061086 0.999577843 1 9.139920589 -6.253959437 24.06293326 0.882780486 1.022046787 0.253014815 0.12625688 450.0892739 1447931.691 0.020842769 0.034100873 5.57E-07 6.253959437 0.1392663 VPS(ph)S(ph)DEEVVEEPQSR ddPTM_HeLa_CUDC101_4h_R1 1 VPSSDEEVVEEPQSR 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 VPS(1)S(1)DEEVVEEPQSR 144.18 0.0033291 66540000 484.39 384.87 507.96 265.68 371.05 362.49 293.78 339.04 474.82 480.75 TRUE FALSE FALSE 427.6105385 396.7273885 535.4218541 276.5155788 343.6783807 355.5761072 305.111193 377.6349432 455.2477186 477.8904776 0.894787736 0.830163829 1.120386112 0.578617051 0.719157206 0.744053552 0.638454222 0.79021232 0.952619355 1 8.900536211 -6.253940858 24.99989154 0.949727112 0.695174891 0.693197847 0.08818919 259.2659245 864385.7371 0.013080495 0.021416019 5.57E-07 6.253940858 -0.254552221 FNDSEGDDTEET(ph)EDYR ddPTM_HeLa_CUDC101_4h_R1 1 FNDSEGDDTEETEDYR 16 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 FNDSEGDDT(0.024)EET(0.976)EDYR 305.43 2.47E-123 61657000 1232.5 1199.4 1110.4 891.6 1090.5 1041.4 1009.1 845.27 1178.8 1039.3 TRUE FALSE FALSE 1088.028218 1236.352092 1170.431583 927.9633018 1010.055988 1021.53703 1048.021325 941.4921201 1130.209365 1033.118197 1.053149796 1.196718919 1.132911593 0.898216007 0.977677085 0.988790085 1.014425385 0.911311138 1.093978761 1 10.0127896 -6.253742512 24.95954484 1.048688791 0.964008429 0.450881386 0.066254484 662.4248437 2148124.951 0.011178514 0.018306773 5.58E-07 6.253742512 -0.084680361 IPSAS(ph)PQTQR ddPTM_HeLa_CUDC101_4h_R1 1 IPSASPQTQR 10 0 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 0 IPS(0.174)AS(0.826)PQTQR 100.38 0.015845 16836000 763.53 534.79 638.03 512.43 403.52 445.28 582.43 663.59 503.27 663.03 TRUE FALSE FALSE 674.0301708 551.266246 672.5238317 533.3291103 373.7531335 436.7870259 604.8945202 739.1304033 482.5249976 659.0862681 1.022673667 0.836409849 1.020388171 0.809194693 0.567077713 0.662716016 0.917777459 1.121447129 0.732112048 1 9.364323502 -6.253741099 20.14461113 0.995793869 0.799011476 0.000247545 0.169357609 42.51670602 111252.4782 0.023093985 0.037675721 5.58E-07 6.253741099 -0.196782393 VET(ph)GVLKPGMVVTFAPVNVTTEVK ddPTM_HeLa_CUDC101_4h_R1 2 VETGVLKPGMVVTFAPVNVTTEVK 24 1 Q5VTE0;P68104;A0A087WVQ9 Q5VTE0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 1 0 VET(1)GVLKPGMVVTFAPVNVTTEVK;VET(1)GVLKPGMVVTFAPVNVTTEVK ; 90.964 4.07E-05 41014000 3148.7 3698 3266.53 2840.61 3147.31 2969.54 2721.22 3165.09 3218.8 3747.9 TRUE FALSE FALSE 2779.614159 3811.930997 3443.128493 2956.462354 2915.139212 2912.900972 2826.178367 3525.391052 3086.119702 3725.607324 0.746083502 1.023170363 0.924179118 0.793551788 0.782460135 0.781859364 0.758581923 0.946259427 0.828353456 1 11.86325991 -6.253695366 24.25091346 0.89306186 0.806168847 0.205298521 0.088500972 664.0181463 2079416.147 0.016822956 0.027542064 5.58E-07 6.253695366 -0.086893013 RTEARS(ph)S(ph)DEENGPPS(ph)SPDLDR ddPTM_HeLa_CUDC101_4h_R1 1 RTEARSSDEENGPPSSPDLDR 21 2 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 3 0 RT(0.057)EARS(0.971)S(0.971)DEENGPPS(0.643)S(0.357)PDLDR 88.829 0.00075496 27819000 1090.3 1091.3 968.27 1214.9 1418.3 1225.9 1052.9 1116.4 1275.1 1229.2 TRUE FALSE FALSE 962.4966868 1124.921659 1020.617605 1264.448873 1313.674835 1202.518 1093.510706 1243.486463 1222.539838 1221.888664 0.787712265 0.920641702 0.835278725 1.034831496 1.075118277 0.984146949 0.894934815 1.017675751 1.000532925 1 10.25489712 -6.253497857 24.81719764 0.894709631 0.99857344 0.265143336 0.075116792 632.7091143 1977210.009 0.013829413 0.022654004 5.58E-07 6.253497857 0.103863809 RGT(ph)SPRPPEGGLGYSQLGDDDLK ddPTM_HeLa_CUDC101_4h_R1 1 RGTSPRPPEGGLGYSQLGDDDLK 23 2 P21127;P21127-8;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-9;P21127-2;P21127-3;P21127-6;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-8;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 RGT(0.5)S(0.5)PRPPEGGLGYSQLGDDDLK 60.454 0.028063 23762000 1376.8 1347.3 1400.5 1037.1 947.27 1261.5 1146.1 872.94 1280.2 1584.7 TRUE FALSE FALSE 1215.413591 1388.808716 1476.215266 1079.397421 877.3917793 1237.438989 1190.305461 972.3119611 1227.429614 1575.274134 0.771556877 0.881629861 0.937116426 0.685212432 0.556977202 0.785538823 0.755617981 0.617233496 0.77918477 1 10.6213872 -6.252994049 23.88633657 0.891497557 0.6833263 0.54525381 0.087727171 223.8554326 633139.6512 0.015650491 0.025659276 5.58E-07 6.252994049 -0.208171257 SSS(ph)PGKLLGSGYGGLTGGSSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSPGKLLGSGYGGLTGGSSR 21 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 S(0.032)S(0.032)S(0.932)PGKLLGS(0.002)GY(0.001)GGLTGGSSR 97.223 0.00052081 0 717.44 766.2 945.35 795.11 1674.1 1032.5 1014.3 1389.1 1044.1 778.29 TRUE FALSE FALSE 633.3427708 789.8057138 996.4584805 827.5380226 1550.604978 1012.806783 1053.421891 1547.229529 1001.061756 773.6606965 0.818631182 1.020868344 1.287978677 1.069639477 2.004244219 1.309109778 1.361607092 1.999881261 1.29392867 1 9.595557174 -6.252729501 1.232106462 0.917033334 1.616470348 0.446593645 0.282275283 0.221479562 0.6627073 0.041429349 0.081722592 5.59E-07 6.252729501 0.699437014 SS(ph)SPAPADIAQTVQEDLR ddPTM_HeLa_CUDC101_4h_R1 1 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 0 S(0.001)S(0.499)S(0.499)PAPADIAQTVQEDLR 247.44 3.50E-56 17254000 1746.1 1866.6 1671.1 1613.5 1707 1666.3 1744 1498.7 1896.9 1923.3 TRUE FALSE FALSE 1541.424805 1924.107734 1761.444721 1679.305504 1581.078011 1634.518104 1811.266664 1669.30595 1818.708979 1911.860126 0.806243503 1.006406121 0.921325099 0.878362115 0.826984145 0.854936029 0.947384508 0.87313184 0.951277217 1 10.90076126 -6.252694249 19.03843909 0.915954158 0.876205506 0.161714032 0.060426763 67.9371048 147892.0598 0.012264052 0.020034343 5.59E-07 6.252694249 -0.039748652 TVSASS(ph)TGDLPK ddPTM_HeLa_CUDC101_4h_R1 2 TVSASSTGDLPK 12 0 P78362;H7C5L6;P78362-2 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 0 TVSAS(0.004)S(0.996)TGDLPK;TVSAS(0.003)S(0.989)T(0.008)GDLPK ; 267.93 8.64E-71 162172000 11949.3 10710.8 10436.3 9849.3 10747.7 11060.3 10186.2 9391.9 10152 10886.3 TRUE FALSE FALSE 10548.62117 11040.78705 11000.51795 10250.99703 9954.863583 10849.34321 10579.08515 10461.03593 9733.530263 10821.5478 0.974779335 1.020259509 1.016538313 0.947276417 0.919911252 1.002568524 0.977594457 0.966685739 0.899458233 1 13.40161924 -6.252015513 24.92191259 0.992651841 0.963454634 0.02678817 0.037801124 734.3545959 1942040.296 0.0038615 0.006347069 5.60E-07 6.252015513 -0.029197207 ADREVQAEQPSSSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 ADREVQAEQPSSSSPR 16 1 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 ADREVQAEQPSS(0.002)S(0.389)S(0.61)PR;ADREVQAEQPS(0.004)S(0.028)S(0.186)S(0.782)PR ; 126.8 0.00028428 34977700 1981.34 2188.92 1865.5 2177.64 2445.3 2161.3 1849.1 2319.8 2659 2347.5 TRUE FALSE FALSE 1749.090329 2256.358031 1966.354573 2266.453572 2264.915091 2120.076803 1920.420406 2583.876655 2549.394895 2333.536966 0.749544727 0.9669262 0.842649849 0.971252483 0.970593191 0.908525056 0.822965496 1.107279076 1.092502468 1 11.18830261 -6.251748576 24.43037768 0.883805896 0.946884979 0 0.11286888 1172.852349 2956742.273 0.01693569 0.027854695 5.60E-07 6.251748576 0.063079083 KYS(ph)EVDDSLPSGGEKPSK ddPTM_HeLa_CUDC101_4h_R1 1 KYSEVDDSLPSGGEKPSK 18 2 Q05D32;H0YMH7;Q05D32-2;H0YNU2;H0YNW9 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 KY(0.005)S(0.993)EVDDS(0.002)LPSGGEKPSK 67.614 0.018736 12284000 1141.1 1240 1108.4 1403.5 1504.6 1386.1 1570 1088.1 1039.7 1504.3 TRUE FALSE FALSE 1007.341988 1278.20293 1168.323457 1460.740796 1393.608656 1359.662452 1630.555426 1211.964906 996.8431259 1495.352357 0.673648577 0.854783774 0.781303117 0.97685391 0.931960049 0.909258909 1.090415526 0.810487843 0.666627582 1 10.54626976 -6.251710824 24.38299003 0.838379973 0.949364624 0.262901663 0.113195572 779.1772902 1952875.05 0.020220752 0.033248527 5.60E-07 6.251710824 0.110984651 KTVEDEDQDS(ph)EEEKDNDSYIK ddPTM_HeLa_CUDC101_4h_R1 1 KTVEDEDQDSEEEKDNDSYIK 21 2 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 KT(0.002)VEDEDQDS(0.998)EEEKDNDSYIK 66.264 0.0019924 0 469.46 638.2 643.13 386.3 472.8 494.17 426.45 413.13 562.12 730.55 TRUE FALSE FALSE 414.4306105 657.8621855 677.8995532 402.0549837 437.922486 484.7445306 442.8983194 460.1590493 538.9491757 726.2046561 0.570680189 0.905890895 0.933482796 0.553638675 0.603029025 0.667504025 0.609880859 0.633649269 0.742145029 1 9.50423237 -6.250171623 24.48207604 0.811278532 0.615751077 0.472511356 0.113675494 628.6891987 1365986.662 0.025246477 0.041606176 5.62E-07 6.250171623 -0.195527455 SQDATFSPGS(ph)EQAEK ddPTM_HeLa_CUDC101_4h_R1 1 SQDATFSPGSEQAEK 15 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SQDAT(0.031)FS(0.173)PGS(0.797)EQAEK 211.45 1.31E-23 5736800 2276.9 2451.1 1690.7 1632.3 1714.6 1453.4 1318.3 1364.4 2358.7 2241.5 TRUE FALSE FALSE 2010.005234 2526.615486 1782.104356 1698.872249 1588.117374 1425.678817 1369.147273 1519.717781 2261.473388 2228.167458 0.902088946 1.133943266 0.799807191 0.76245268 0.712745969 0.639843658 0.61447234 0.682048279 1.014947678 1 11.12164195 -6.249963492 1.668130562 0.965219652 0.656586607 0.811310901 0.073237934 0.122117161 0.663612194 0.011980117 0.021784024 5.62E-07 6.249963492 -0.308633044 EFTGS(ph)PPSSATK ddPTM_HeLa_CUDC101_4h_R1 3 EFTGSPPSSATK 12 0 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 0 EFT(0.074)GS(0.92)PPS(0.003)S(0.003)ATK;EFTGS(0.6)PPS(0.123)S(0.273)AT(0.004)K;EFT(0.342)GS(0.658)PPS(0.001)SATK ;; 174.46 6.85E-16 67603000 15915.5 12790 12791.7 12158.9 11801.3 11178 10894.6 9450.2 12229.3 15234.2 TRUE FALSE FALSE 14049.90922 13184.04474 13483.25799 12654.7925 10930.74161 10964.79827 11314.80837 10525.97257 11725.20308 15143.5863 0.927779519 0.870602543 0.890360957 0.835653606 0.721806671 0.724055587 0.747168349 0.695077927 0.774268581 1 13.88641928 -6.24958077 0.440770546 0.990504954 0.669811249 0.449800105 0.071764076 0.21145885 0.077581437 0.009287514 0.028064584 5.63E-07 6.24958077 -0.320693705 VSQGSAESLSPS(ph)FR ddPTM_HeLa_CUDC101_4h_R1 1 VSQGSAESLSPSFR 14 0 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 VSQGSAESLS(0.025)PS(0.975)FR 118.71 0.0015411 31789000 1208 880.38 944.83 1144.9 1367.2 1070.7 1316.5 840.1 1061 1089.6 TRUE FALSE FALSE 1066.400071 907.5034643 995.9103678 1191.593971 1266.34438 1050.278181 1367.277846 935.7335882 1017.265131 1083.119011 0.984564079 0.837861265 0.919483785 1.100150546 1.169164577 0.96967939 1.262352366 0.863924997 0.939199775 1 10.08097606 -6.249038645 24.57495276 0.973455678 1.083167337 0.240905799 0.11137245 753.9192094 1494065.819 0.015435529 0.025468539 5.64E-07 6.249038645 0.109711659 DRS(ph)SPPPGYIPDELHQVAR ddPTM_HeLa_CUDC101_4h_R1 3 DRSSPPPGYIPDELHQVAR 19 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 DRS(0.905)S(0.093)PPPGY(0.001)IPDELHQVAR;DRS(0.772)S(0.226)PPPGY(0.003)IPDELHQVAR;DRS(0.749)S(0.193)PPPGY(0.059)IPDELHQVAR ;; 139.74 2.92E-05 181146000 3847.97 3818.2 3922.54 3132.68 3934.04 3674.63 3161.35 3588.07 3814.29 4051 TRUE FALSE FALSE 3396.91679 3935.834216 4134.604377 3260.444231 3643.833707 3604.542555 3283.284328 3996.521385 3657.063352 4026.904472 0.843555345 0.97738455 1.026745086 0.809665154 0.90487215 0.89511499 0.815337029 0.992454977 0.908157464 1 11.97545553 -6.2486193 24.93682528 0.935767495 0.881536513 0.182234014 0.067808416 1418.472506 2759123.828 0.01184541 0.019556961 5.64E-07 6.2486193 -0.054230982 ESGVVAVS(ph)PEKS(ph)ESPQKEDGLSSQLK ddPTM_HeLa_CUDC101_4h_R1 1 ESGVVAVSPEKSESPQKEDGLSSQLK 26 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 2 0 ES(0.002)GVVAVS(0.808)PEKS(0.808)ES(0.382)PQKEDGLSSQLK 66.52 0.00065243 62128000 3815.3 3474.3 3128.5 3030.8 3199.6 3109.1 2753.5 3171.3 3258.1 3350.7 TRUE FALSE FALSE 3368.076318 3581.339065 3297.636173 3154.409124 2963.571883 3049.799098 2859.703417 3532.307973 3123.799739 3330.769887 1.011200543 1.075228607 0.990052236 0.947051052 0.889755817 0.91564389 0.858571296 1.060507958 0.937861169 1 11.70163997 -6.247991 3.28471911 1.011310317 0.924752592 0.253732845 0.058344005 0.193817029 4.360879254 0.007695587 0.012782904 5.65E-07 6.247991 -0.086557725 S(ph)PGSPPGPELPIETALDDR ddPTM_HeLa_CUDC101_4h_R1 1 SPGSPPGPELPIETALDDR 19 0 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-5;Q8TEW0-9;Q8TEW0-8;Q5VWU8;Q8TEW0-10;B1AP52;F5GZI3 Q5VWV2;F5GZI3 PARD3 Partitioning defective 3 homolog 1 0 S(0.947)PGS(0.053)PPGPELPIETALDDR 128.95 2.73E-05 2734600 1425.5 980.69 1142.7 909.81 1110.6 989.5 890.75 925.66 1633.1 1004.2 TRUE FALSE FALSE 1258.405051 1010.903896 1204.477818 946.9159843 1028.673251 970.6269361 925.1065259 1031.033393 1565.782927 998.2269737 1.260640199 1.012699439 1.206617182 0.948597873 1.030500355 0.97235094 0.926749677 1.032864689 1.568564032 1 9.963224078 -6.247852305 24.8609812 1.121867566 0.981266194 0.257404349 0.161849506 718.8200497 1315262.381 0.01585436 0.026193196 5.65E-07 6.247852305 -0.140601373 EES(ph)WGPPR ddPTM_HeLa_CUDC101_4h_R1 2 EESWGPPR 8 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 EES(1)WGPPR;EES(1)WGPPR ; 128.91 0.005779 26575000 4965.5 3987.5 4032.8 3615.4 3988.5 3709.1 3999.7 3217.5 3876.5 3864 TRUE FALSE FALSE 4383.451617 4110.350149 4250.825367 3762.851639 3694.276301 3638.355097 4153.969769 3583.767194 3716.709029 3841.016756 1.141221686 1.070120338 1.106692742 0.979649889 0.961796455 0.947237497 1.081476607 0.93302566 0.967636765 1 11.90727254 -6.247846193 23.97321848 1.071421589 0.98333715 0.274157523 0.059944572 432.2448864 762315.1293 0.009552351 0.015776463 5.65E-07 6.247846193 -0.088084438 NLS(ph)SDEATNPISR ddPTM_HeLa_CUDC101_4h_R1 1 NLSSDEATNPISR 13 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 NLS(0.5)S(0.5)DEATNPISR 203.52 4.69E-17 50625000 1525.1 1468.7 1542.7 1077.6 1414.2 1244.5 1230.6 956.92 1262.9 1510.1 TRUE FALSE FALSE 1346.33009 1513.948906 1626.103028 1121.549186 1309.877283 1220.763236 1278.064654 1065.851905 1210.842727 1501.117858 0.896885 1.008547662 1.083261397 0.747142658 0.872601226 0.813236102 0.8514086 0.710038788 0.806627355 1 10.55182154 -6.247653158 24.99956609 0.964270566 0.806696001 0.490905777 0.08127902 459.732831 833667.1094 0.010465131 0.017295533 5.65E-07 6.247653158 -0.157574565 S(ph)VAS(ph)NQSEMEFSSLQDMPK ddPTM_HeLa_CUDC101_4h_R1 1 SVASNQSEMEFSSLQDMPK 19 0 Q8N163-2;Q8N163;G3V119;H0YB24;A0A087X2B6 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 2 0 S(1)VAS(0.999)NQS(0.001)EMEFSSLQDMPK 110.83 0.00093597 3244100 2548.4 2179.3 1886 2034.4 1997.7 1739.3 1608.3 1671 2524.4 2431.6 TRUE FALSE FALSE 2249.680415 2246.44165 1987.962865 2117.371625 1850.333651 1706.12575 1670.33267 1861.219886 2420.343164 2417.136735 0.930721205 0.929381287 0.822445349 0.875983388 0.765506404 0.705845774 0.691037725 0.770010177 1.00132654 1 11.23908337 -6.247506651 0.525767806 0.984170716 0.690613604 0.890545506 0.036125508 0.218518608 0.114541422 0.009650119 0.027981348 5.66E-07 6.247506651 -0.293557112 IQAAAS(ph)TPTNATAASDANTGDR ddPTM_HeLa_CUDC101_4h_R1 1 IQAAASTPTNATAASDANTGDR 22 0 P49841;P49841-2 P49841 GSK3B Glycogen synthase kinase-3 beta 1 0 IQAAAS(0.487)T(0.487)PT(0.022)NAT(0.003)AASDANTGDR 243.99 2.79E-58 6321000 1935 1693.9 1791.8 1484.1 1333.2 1630.6 1418.5 1913.7 1715.7 1854.3 TRUE FALSE FALSE 1708.182233 1746.087051 1888.670128 1544.628013 1234.852492 1599.499022 1473.21202 2131.547873 1644.97812 1843.270541 0.926712707 0.9472766 1.02462991 0.837982259 0.669924715 0.867750548 0.799238086 1.156394477 0.892423593 1 10.84805212 -6.246902501 24.0379621 0.966905111 0.85171019 0.122553054 0.118765811 617.8580707 1021679.179 0.016947555 0.028012436 5.66E-07 6.246902501 -0.115194921 CS(ph)QFCT(ph)T(ph)GMDGGMS(ph)IWDVK ddPTM_HeLa_CUDC101_4h_R1 1 CSQFCTTGMDGGMSIWDVK 19 0 O15143 O15143 ARPC1B Actin-related protein 2/3 complex subunit 1B 4 0 CS(1)QFCT(1)T(1)GMDGGMS(1)IWDVK 50.827 0.0029308 0 662.16 747.58 601.94 460.08 447.41 541.85 423.69 526.69 662.89 548.89 TRUE FALSE FALSE 584.5426086 770.6120537 634.4826972 478.844051 414.4054557 531.515114 440.0318652 586.6462606 635.5653936 545.6251779 1.07132631 1.412346946 1.162854507 0.877606222 0.759505742 0.974139639 0.806472801 1.0751818 1.16483883 1 9.091766409 -6.246692926 24.07004093 1.077768747 0.889935357 0.409808881 0.140850754 512.0486188 835795.4144 0.022387698 0.037012605 5.67E-07 6.246692926 -0.18783339 SRT(ph)S(ph)VQTEDDQLIAGQSAR ddPTM_HeLa_CUDC101_4h_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 G3XAM7;P35221-3;P35221;P35221-2;A0A0A0MTJ6;A0A0A0MRI5;P26232-4;P26232-6;P26232-3;P26232-2;P26232-5;P26232 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 2 0 S(0.226)RT(0.886)S(0.886)VQT(0.003)EDDQLIAGQSAR 84.493 0.0073753 13836000 1135.7 677.26 997.6 618.11 710.06 463.22 647.1 666.39 862.97 938.98 TRUE FALSE FALSE 1002.574968 698.1255778 1051.533274 643.3191975 657.6802884 454.3848503 672.0588638 742.249144 827.3980113 933.3949052 1.074116606 0.747942349 1.126568474 0.689225101 0.704610969 0.486808796 0.720015569 0.79521448 0.886439391 1 9.866343782 -6.246270374 22.30931894 1.016035755 0.672169862 0.552788531 0.125558169 87.36223683 128484.3856 0.017556987 0.029009266 5.67E-07 6.246270374 -0.343865894 LQSFDS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 3 LQSFDSPER 9 0 E9PGM9;P78332;P78332-2 E9PGM9 RBM6 RNA-binding protein 6 1 0 LQS(0.004)FDS(0.996)PER;LQS(0.006)FDS(0.994)PER;LQS(0.004)FDS(0.996)PER ;; 117.95 0.0062814 269408900 11537.8 10533.6 10134.7 9187.8 10270.6 9292.5 9494.1 8335.2 10935.2 11235.3 TRUE FALSE FALSE 10185.35657 10858.12773 10682.61254 9562.518197 9512.9583 9115.261045 9860.290617 9284.045476 10484.44643 11168.47194 0.911974049 0.972212474 0.956497236 0.856206494 0.851769011 0.816160089 0.88286837 0.831272669 0.938753886 1 13.44714419 -6.246255408 4.751779975 0.958720814 0.84717798 0.807417236 0.026443898 0.083197004 5.250874288 0.005429665 0.008863362 5.67E-07 6.246255408 -0.111542835 S(ph)SPPPGYIPDELHQVAR ddPTM_HeLa_CUDC101_4h_R1 2 SSPPPGYIPDELHQVAR 17 0 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 S(0.5)S(0.5)PPPGYIPDELHQVAR;S(0.612)S(0.388)PPPGYIPDELHQVAR ; 133.35 6.47E-05 7710700 2567.6 2009.34 2009.85 2128.27 2022.7 2070.4 2044.83 1684.14 2274.95 2191.59 TRUE FALSE FALSE 2266.62982 2071.245384 2118.50857 2215.07005 1873.489451 2030.91057 2123.699778 1875.85569 2181.175598 2178.554325 1.040428413 0.95074305 0.972437798 1.016761448 0.859969122 0.932228564 0.974820666 0.861055273 1.001203217 1 11.08915537 -6.245343598 0.894675799 1.017212912 0.913812757 0.421696836 0.044346452 0.362353905 0.572667333 0.008150211 0.018431638 5.68E-07 6.245343598 -0.103400156 SSGS(ph)PEPSPAIAK ddPTM_HeLa_CUDC101_4h_R1 1 SSGSPEPSPAIAK 13 0 K7ELE9;Q66K64 K7ELE9 DCAF15 DDB1- and CUL4-associated factor 15 1 0 S(0.002)S(0.004)GS(0.992)PEPS(0.002)PAIAK 131.79 0.0010377 72742000 6135 5351.4 5511.3 5139.3 5733.1 4933.6 4976.5 5972.2 4933.6 5912 TRUE FALSE FALSE 5415.8646 5516.270291 5809.257549 5348.902868 5310.180635 4839.4998 5168.445272 6652.051108 4730.23492 5876.835161 0.921561427 0.938646421 0.98850102 0.910167245 0.903578285 0.823487416 0.87946065 1.131910446 0.804894946 1 12.52082372 -6.244931005 23.42312966 0.961549874 0.919574356 0 0.092272413 879.4210744 1247775.283 0.011766499 0.01946677 5.69E-07 6.244931005 -0.041975518 VIGQDHDFSES(ph)SEEEAPAEASSGALR ddPTM_HeLa_CUDC101_4h_R1 1 VIGQDHDFSESSEEEAPAEASSGALR 26 0 P23497;P23497-2;P23497-3;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;H7C4B4;H7C1G8 P23497 SP100 Nuclear autoantigen Sp-100 1 0 VIGQDHDFS(0.007)ES(0.887)S(0.107)EEEAPAEASSGALR 82.151 1.87E-05 5179000 1598.2 1352.6 1434.6 988 1367.2 1177 992.29 1043.1 1405.1 1202.1 TRUE FALSE FALSE 1410.861419 1394.272003 1512.158815 1028.294911 1266.34438 1154.550686 1030.562958 1161.842288 1347.181183 1194.949856 1.180686714 1.166803775 1.265457967 0.860533943 1.059746879 0.966191745 0.86243197 0.972293759 1.127395578 1 10.22273436 -6.244707095 24.97714447 1.107180684 0.947331419 0.562439761 0.086176505 688.2492182 1027385.193 0.015511709 0.025679232 5.69E-07 6.244707095 -0.159849265 TNTMNGSKS(ph)PVISR ddPTM_HeLa_CUDC101_4h_R1 2 TNTMNGSKSPVISR 14 1 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 TNTMNGS(0.081)KS(0.919)PVISR;TNT(0.03)MNGS(0.239)KS(0.732)PVISR ; 178.47 5.47E-07 45767000 5875.5 5682.5 5374.1 4962 5489.4 4831.2 4831.8 5510.1 5538.7 5753.5 TRUE FALSE FALSE 5186.782797 5857.57109 5664.640102 5164.371808 5084.457898 4739.052909 5018.164145 6137.347511 5310.392442 5719.277926 0.906894693 1.024180179 0.990446727 0.902976193 0.889003466 0.828610354 0.877412185 1.073098316 0.928507499 1 12.4816173 -6.244613832 22.91059236 0.963458303 0.906018184 0.137897272 0.067228431 439.1302159 597941.9293 0.01052621 0.017413938 5.69E-07 6.244613832 -0.057440119 QNTAWDTETS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 QNTAWDTETSPR 12 0 Q8NDV7-2;Q8NDV7-6;Q8NDV7-5;Q8NDV7 Q8NDV7-2 TNRC6A Trinucleotide repeat-containing gene 6A protein 1 0 QNTAWDTET(0.002)S(0.998)PR;QNTAWDTET(0.003)S(0.997)PR ; 184.96 1.12E-10 66109000 7742.3 6654.8 6424.5 5956.8 5965 6583.2 6491.2 5990.4 6923.3 6228.5 TRUE FALSE FALSE 6834.759331 6859.8265 6771.827903 6199.744051 5524.973834 6457.636428 6741.567758 6672.322922 6637.918644 6191.452605 1.10390239 1.107951064 1.093738148 1.001339176 0.892355023 1.042992144 1.088850741 1.077666801 1.072110063 1 12.59606221 -6.244346352 24.23029106 1.058710495 1.018544976 0.149896152 0.058801572 1264.982456 1793181.503 0.010550479 0.017467788 5.70E-07 6.244346352 -0.040165519 TAVPPLS(ph)EGDGYSS(ph)ENTSR ddPTM_HeLa_CUDC101_4h_R1 1 TAVPPLSEGDGYSSENTSR 19 0 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 2 0 T(0.001)AVPPLS(0.991)EGDGY(0.017)S(0.021)S(0.581)ENT(0.264)S(0.125)R 94.973 0.022931 5805500 984.46 933.29 990.51 704.91 858.49 665.74 791.13 804.4 1178.5 970.28 TRUE FALSE FALSE 869.0630911 962.0435587 1044.059967 733.6592767 795.1609031 653.0421187 821.6441491 895.9696445 1129.921731 964.5087314 0.901042223 0.997444116 1.082478502 0.76065592 0.824420637 0.677072273 0.851878394 0.928938863 1.171499743 1 9.913650488 -6.2441836 24.99282924 0.964908456 0.804570526 0.505869799 0.099576811 539.0439468 780737.3661 0.012054143 0.019956826 5.70E-07 6.2441836 -0.16033793 RPS(ph)QEQSASASSGQPQAPLNR ddPTM_HeLa_CUDC101_4h_R1 2 RPSQEQSASASSGQPQAPLNR 21 1 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 RPS(1)QEQSASASSGQPQAPLNR;RPS(0.979)QEQS(0.02)AS(0.001)ASSGQPQAPLNR ; 169.51 5.58E-09 88735000 2364.9 1954.98 1812.66 1571.36 1746.84 1765.32 1579.41 1210.26 1699.7 1764.42 TRUE FALSE FALSE 2087.690007 2015.210617 1910.657883 1635.446853 1617.979093 1731.649462 1640.328373 1348.031106 1629.637647 1753.925151 1.190295952 1.148971845 1.089361129 0.932449627 0.922490388 0.987299521 0.935232824 0.768579609 0.929137509 1 10.77637147 -6.244133607 4.280567886 1.09798025 0.913695924 0.451140875 0.087335298 0.137102722 6.199592981 0.013690112 0.022454931 5.70E-07 6.244133607 -0.184284325 EAVATIMS(ph)GSK ddPTM_HeLa_CUDC101_4h_R1 1 EAVATIMSGSK 11 0 O43663-2;O43663-4;O43663;O43663-3 O43663-2;O43663-3 PRC1 Protein regulator of cytokinesis 1 1 0 EAVATIMS(0.893)GS(0.107)K 131.69 0.0018591 7577700 2790.6 2627.6 1877.7 2373.1 1913.8 1803.3 1711 1673.8 2434.7 2823.4 TRUE FALSE FALSE 2463.490098 2708.553242 1979.214142 2469.885275 1772.622787 1768.905057 1776.993843 1864.338626 2334.340635 2806.606291 0.877746945 0.965063483 0.705198356 0.880025561 0.631589401 0.630264766 0.633146818 0.664267957 0.831730707 1 11.45461098 -6.243954701 0.45489371 0.975411903 0.582177921 0.637190095 0.082993498 0.40527654 0.157974545 0.022044425 0.066652022 5.70E-07 6.243954701 -0.393233982 SPGLVPPS(ph)PEFAPR ddPTM_HeLa_CUDC101_4h_R1 2 SPGLVPPSPEFAPR 14 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 SPGLVPPS(1)PEFAPR;S(0.034)PGLVPPS(0.966)PEFAPR ; 111.07 0.0033154 39043000 5835.9 5017.9 5090.3 4464.5 4184.4 4907.5 4000.8 4983.2 6010.3 5696.8 TRUE FALSE FALSE 5151.824649 5172.495551 5365.497015 4646.581607 3875.725148 4813.897614 4155.112196 5550.467345 5762.55289 5662.91518 0.909747804 0.913398027 0.947479672 0.820528201 0.684404591 0.850074116 0.73374085 0.980143119 1.017594773 1 12.46732921 -6.243527954 4.84408562 0.951923796 0.802983266 0.450806315 0.079010807 0.130770777 8.689464284 0.011478516 0.018764732 5.71E-07 6.243527954 -0.148940531 LVDVS(ph)PDRGSPPSR ddPTM_HeLa_CUDC101_4h_R1 2 LVDVSPDRGSPPSR 14 1 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 LVDVS(0.999)PDRGS(0.001)PPSR;LVDVS(0.994)PDRGS(0.001)PPS(0.005)R ; 176.56 9.96E-07 106038000 3993.8 3772.8 3958.7 3381 3433.7 3217 3752.5 4008.1 4348.1 4316 TRUE FALSE FALSE 3525.652818 3889.035496 4172.719296 3518.891794 3180.402792 3155.641085 3897.235182 4464.365903 4168.869478 4290.32824 0.821767618 0.906465724 0.972587425 0.820191742 0.741295913 0.735524395 0.908376927 1.040565116 0.9716901 1 12.06687231 -6.243239541 24.26959874 0.9167146 0.840169971 0.155316536 0.093881211 1041.423489 1388743.199 0.016266079 0.026936559 5.71E-07 6.243239541 -0.076544629 SLSS(ph)S(ph)PQAQPPRPAELSDEEVAELFQR ddPTM_HeLa_CUDC101_4h_R1 1 SLSSSPQAQPPRPAELSDEEVAELFQR 27 1 A0A087WXA6;A0A087WT45;Q4V328-4;Q4V328 A0A087WXA6 GRIPAP1 GRIP1-associated protein 1 2 0 S(0.324)LS(0.37)S(0.68)S(0.626)PQAQPPRPAELSDEEVAELFQR 59.567 0.0040861 19700000 1162.5 821.78 730.41 1186 1486.1 978.85 973.94 848.14 1007.2 969.17 TRUE FALSE FALSE 1026.233512 847.0980678 769.898174 1234.370206 1376.473364 960.1800671 1011.505192 944.6888293 965.6827897 963.4053337 1.065214688 0.879274837 0.799142528 1.281257393 1.428758297 0.996652223 1.049926917 0.980572555 1.002363964 1 9.911999101 -6.243200376 24.98639762 1.002008883 1.14926885 0.27939689 0.147435409 1143.462164 1566478.427 0.023628899 0.039130491 5.71E-07 6.243200376 0.147259968 APSPAPRPVPGS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 1 APSPAPRPVPGSPAR 15 1 Q5TZA2-2;Q5TZA2 Q5TZA2-2 CROCC Rootletin 1 0 APSPAPRPVPGS(1)PAR 83.964 0.0091974 19641000 1864.2 1470.2 1600.4 1409.2 1363.3 1497.2 1387.1 1734.4 1631.3 1585.4 TRUE FALSE FALSE 1645.681302 1515.495119 1686.922465 1466.673267 1262.732075 1468.643405 1440.600912 1931.837085 1564.057124 1575.96997 1.044233921 0.961626901 1.070402671 0.930647979 0.801241203 0.93189809 0.914104291 1.22580831 0.992440943 1 10.62202433 -6.243098993 24.36106487 1.019407415 0.94768573 0.052658099 0.103983036 1079.766272 1434225.669 0.015035246 0.024896143 5.71E-07 6.243098993 -0.071721685 PSGGFVISGVLS(ph)PDTISSK ddPTM_HeLa_CUDC101_4h_R1 1 PSGGFVISGVLSPDTISSK 19 0 H0Y8J2;Q03188;H0Y9W1 H0Y8J2 CENPC Centromere protein C 1 0 PSGGFVISGVLS(0.992)PDT(0.007)ISSK 106.57 0.00042526 14254000 1045.9 1030 1166 798.43 1166.5 922.46 917.32 833.42 1109.2 1164.1 TRUE FALSE FALSE 923.3011875 1061.733079 1229.037487 830.9934265 1080.449619 904.8656124 952.7013397 928.293164 1063.478307 1157.175881 0.797891835 0.91752092 1.06210085 0.718121973 0.933695246 0.781960311 0.823298649 0.802205766 0.919029098 1 10.17639244 -6.242190956 24.99942301 0.914055447 0.817600015 0.354808047 0.082309348 1097.702204 1425671.442 0.014756706 0.024446989 5.73E-07 6.242190956 -0.096455432 VQGSDS(ph)DEEVVVATTR ddPTM_HeLa_CUDC101_4h_R1 1 VQGSDSDEEVVVATTR 16 0 P26640;A0A140T936;P26640-2 P26640 VARS Valine--tRNA ligase 1 0 VQGS(0.038)DS(0.962)DEEVVVATTR 143.39 2.37E-05 0 842.15 838.02 797.6 691.27 1052.7 1020.4 947.51 750.14 959.07 737.05 TRUE FALSE FALSE 743.4344536 863.8384029 840.7206686 719.4629785 975.0444183 1000.93757 984.0557781 835.5329054 919.5367287 732.6659938 1.014697638 1.17903439 1.147481493 0.981979489 1.33081708 1.366158084 1.34311649 1.140400827 1.255055832 1 9.517011845 -6.241752635 0.696685903 1.00448179 1.30716727 0.149021708 0.127501368 0.382933799 0.361051119 0.021085209 0.054245806 5.73E-07 6.241752635 0.30268548 TDLQGSAS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 TDLQGSASPSK 11 0 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 T(0.008)DLQGS(0.061)AS(0.892)PS(0.039)K;T(0.002)DLQGS(0.199)AS(0.792)PS(0.008)K ; 161.87 9.89E-05 40958000 6402.7 5211.4 4805.5 4939 3565 4730.4 4135.2 3765.9 4908.7 5663.5 TRUE FALSE FALSE 5652.185212 5371.957057 5065.299866 5140.433768 3302.017052 4640.175501 4294.696049 4194.594834 4706.361308 5629.81325 1.003973837 0.954198091 0.899727867 0.913073585 0.586523372 0.824214818 0.762848759 0.745068202 0.835971124 1 12.45887135 -6.241571656 1.545508207 0.998549938 0.741868929 0.513552255 0.086084078 0.134136122 0.626863617 0.010475497 0.019461573 5.73E-07 6.241571656 -0.25668101 LNYSDES(ph)PEAGK ddPTM_HeLa_CUDC101_4h_R1 1 LNYSDESPEAGK 12 0 Q9GZR1-2;Q9GZR1 Q9GZR1-2 SENP6 Sentrin-specific protease 6 1 0 LNYS(0.06)DES(0.94)PEAGK 121.95 0.0030455 44726000 2902 2351.7 2634.1 2205.2 2276.7 2424.7 2338.3 2280.8 1959.4 2655.2 TRUE FALSE FALSE 2561.831959 2424.15309 2776.507414 2295.137588 2108.752377 2378.452887 2428.489014 2540.437053 1878.632703 2639.406752 0.970609004 0.918446195 1.051943741 0.869565703 0.798949376 0.901131622 0.92008896 0.962503051 0.71176324 1 11.36599798 -6.241512186 24.88745116 0.984104049 0.887604777 0 0.099272672 525.2289265 655968.6372 0.007522202 0.012462987 5.73E-07 6.241512186 -0.096499272 GGS(ph)PDLWK ddPTM_HeLa_CUDC101_4h_R1 4 GGSPDLWK 8 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 GGS(1)PDLWK;GGS(1)PDLWK;GGS(1)PDLWK;GGS(1)PDLWK ;;; 126.31 0.0062687 1276820000 29325.7 26347.2 26580.8 23814.4 27511.1 24903.3 26205.5 25129.6 28081.2 26968.5 TRUE FALSE FALSE 25888.1859 27158.926 28017.83845 24785.65417 25481.66096 24428.31104 27216.25491 27990.25209 26923.68105 26808.09016 0.965685573 1.013086939 1.045126239 0.924558744 0.950521309 0.911229069 1.015225432 1.044097208 1.004311791 1 14.71038082 -6.241043417 24.97318061 0.990228796 0.967437292 0.106524851 0.042281127 2036.543953 2493582.92 0.006684933 0.011075378 5.74E-07 6.241043417 -0.022791504 AGGPTT(ph)PLS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 AGGPTTPLSPTR 12 0 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 2 0 AGGPT(0.002)T(0.998)PLS(0.975)PT(0.025)R 122.52 0.010892 198420000 8746 7548.5 6939.3 6891.8 8169.5 7418.5 6245 1995.9 8420.7 6895.1 TRUE FALSE FALSE 7720.807138 7781.060338 7314.459548 7172.877393 7566.852261 7277.004473 6485.871742 2223.105188 8073.595182 6854.087639 1.126452935 1.135243777 1.067167497 1.046510896 1.103991174 1.061702864 0.946277912 0.324347354 1.177924125 1 12.74274892 -4.240256988 2.654477491 1.068967936 0.151585855 0.951821045 0.051318023 0.080062328 0.700190314 0.007492778 0.165503228 5.75E-05 4.240256988 -0.917382081 down KLSSSS(ph)EPY(ph)EEDEFNDDQSIKK ddPTM_HeLa_CUDC101_4h_R1 1 KLSSSSEPYEEDEFNDDQSIKK 22 2 D6RAY8;Q9H4L7;Q9H4L7-2 D6RAY8 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 KLS(0.003)S(0.063)S(0.086)S(0.896)EPY(0.952)EEDEFNDDQSIKK 104.35 3.04E-05 35057000 4615 3596.8 3454.6 3211.9 4144 3154.1 2996.7 3113.6 3818 3839.5 TRUE FALSE FALSE 4074.036696 3707.613145 3641.366126 3342.895165 3838.305376 3093.940798 3112.283723 3468.039638 3660.620424 3816.662483 1.067434365 0.97142809 0.954070773 0.875868689 1.005670633 0.810640399 0.815446411 0.90865767 0.959115573 1 11.8980959 -6.240762599 0.849437295 1.031381533 0.855549536 0.470465773 0.057733766 0.287291641 0.408352042 0.010582246 0.024631542 5.74E-07 6.240762599 -0.175831997 EQDLPLAEAVRPKT(ph)PPVVIK ddPTM_HeLa_CUDC101_4h_R1 1 EQDLPLAEAVRPKTPPVVIK 20 2 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 1 0 EQDLPLAEAVRPKT(1)PPVVIK 89.011 0.0058494 870970000 3905.7 3380.8 3391.8 3958.8 4312.5 4345 3426.2 4110.8 3535.6 4204.6 TRUE FALSE FALSE 3447.879767 3484.958441 3575.170968 4120.256975 3994.375467 4262.126364 3558.349682 4578.756856 3389.861072 4179.590852 0.824932365 0.83380373 0.855387787 0.985803903 0.955685762 1.019747271 0.851363161 1.095503607 0.811050936 1 12.02914601 -6.240748743 24.21454995 0.903412745 0.975061525 0.293780291 0.079665552 883.8196863 1034346.337 0.013348414 0.022116044 5.74E-07 6.240748743 0.071648779 S(ph)QS(ph)IEQESQEK ddPTM_HeLa_CUDC101_4h_R1 1 SQSIEQESQEK 11 0 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 2 0 S(1)QS(0.897)IEQES(0.103)QEK 145.52 0.010112 20602000 6985.8 5138.6 5671.2 4918.1 4881.4 5190.5 5288.5 5006.9 5393.8 5277.3 TRUE FALSE FALSE 6166.935114 5296.914175 5977.802226 5118.681376 4521.308847 5091.49986 5492.479217 5576.865257 5171.465281 5245.910385 1.175570046 1.009722581 1.13951665 0.975747011 0.861873062 0.970565543 1.047002105 1.063088167 0.985808926 1 12.35697745 -6.240210722 23.60388729 1.082220479 0.979681554 0.184473424 0.076664516 440.2331774 489489.1349 0.013049273 0.021622528 5.75E-07 6.240210722 -0.102538925 TNSGISSASGGSTEPT(ph)TPDSERPAQALLR ddPTM_HeLa_CUDC101_4h_R1 1 TNSGISSASGGSTEPTTPDSERPAQALLR 29 1 A2A2F0;Q86X10-4;Q86X10-2;Q86X10-3;Q86X10;A0A0J9YW54 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 TNSGISSASGGS(0.001)T(0.002)EPT(0.447)T(0.447)PDS(0.104)ERPAQALLR 108.38 3.05E-10 30430000 192.08 177.77 184.96 297.88 287.93 384.48 145.71 447.84 187.26 309.89 TRUE FALSE FALSE 169.5646736 183.246883 194.9594971 310.0288339 266.6899775 377.1466846 151.3300835 498.8202954 179.5410635 308.0467605 0.550451085 0.5948671 0.632889295 1.006434327 0.865745113 1.224316347 0.491256857 1.619300572 0.582837045 1 8.267005554 -6.23968324 21.43842123 0.754233113 1.011248992 0.25627181 0.296333895 198.5310006 195629.8141 0.044550356 0.073794328 5.76E-07 6.23968324 0.257015879 S(ph)PSAPAATSSASSSTSSYK ddPTM_HeLa_CUDC101_4h_R1 1 SPSAPAATSSASSSTSSYK 19 0 A0A087X0S7;A0A0C4DH00;A0A087WTU1;A0A0B4J2G4;Q15345-3;Q15345 A0A087X0S7 LRRC41 Leucine-rich repeat-containing protein 41 1 0 S(0.998)PS(0.002)APAATSSASSSTSSYK 240.61 1.89E-44 53190000 1650.5 1283.1 1235.9 1036.5 1062.7 1349.4 1046.7 664.08 1037.8 1150.2 TRUE FALSE FALSE 1457.030892 1322.63079 1302.716492 1078.77295 984.3067382 1323.662443 1087.07157 739.6761829 995.0214447 1143.358559 1.274342926 1.15679441 1.139377041 0.943512375 0.860890689 1.157696711 0.950770483 0.646932825 0.870261946 1 10.15906219 -6.239629447 5.369109734 1.136222365 0.923561655 0.211243464 0.156520073 0.176189496 16.09422972 0.023164514 0.037909996 5.76E-07 6.239629447 -0.21266071 AGT(ph)PVSELTK ddPTM_HeLa_CUDC101_4h_R1 3 AGTPVSELTK 10 0 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 AGT(1)PVSELTK;AGT(0.994)PVS(0.006)ELTK;AGT(1)PVSELTK ;; 165.63 0.0001044 181513000 17037.7 12993.1 13242.7 12892.5 11791.1 12663.4 11716.2 11424.5 14146.1 14198.4 TRUE FALSE FALSE 15040.56663 13393.40201 13958.64042 13418.31188 10921.29404 12421.86674 12168.09776 12725.0189 13562.99177 14113.94729 1.065652743 0.948947997 0.988996213 0.950712909 0.773794448 0.880112876 0.862132861 0.901591783 0.960963754 1 13.78483391 -6.239486739 1.598934581 1.026180632 0.857826642 0.595662402 0.049550418 0.148487483 0.74208428 0.007749118 0.014294037 5.76E-07 6.239486739 -0.16835399 VAPGPSSGSTPGQVPGS(ph)SALSSPRR ddPTM_HeLa_CUDC101_4h_R1 1 VAPGPSSGSTPGQVPGSSALSSPRR 25 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-5 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 VAPGPSSGSTPGQVPGS(0.287)S(0.287)ALS(0.213)S(0.213)PRR 59.614 0.0031164 34267000 1226.8 1084.2 1053.3 971.27 1163.2 1161.2 783.07 1076.9 1142 1136.6 TRUE FALSE FALSE 1082.996364 1117.602917 1110.244584 1010.882589 1077.393053 1139.052045 813.2732722 1199.489943 1094.926277 1129.839453 0.958540048 0.989169669 0.982656944 0.89471348 0.953580662 1.008153895 0.719813129 1.061646361 0.969098994 1 10.14190207 -6.23930255 0.430304338 0.98977411 0.904486265 0.051308676 0.085635716 2.394015778 0.834076218 0.027414181 0.083934828 5.76E-07 6.23930255 -0.085287844 VRGPVS(ph)GSPDSMNASR ddPTM_HeLa_CUDC101_4h_R1 1 VRGPVSGSPDSMNASR 16 1 A0A499FJS7;O14920-4;O14920-2;O14920 A0A499FJS7 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta 1 0 VRGPVS(0.452)GS(0.452)PDS(0.096)MNASR 152.68 0.00071201 9464900 1049.5 1050.9 1098.4 1006.5 1392.1 1388.8 1145 1352.8 1248.4 708.53 TRUE FALSE FALSE 926.4792009 1083.276983 1157.782826 1047.54942 1289.407556 1362.310954 1189.163034 1506.797284 1196.940424 704.315632 1.31543183 1.538056141 1.643840877 1.487329505 1.830724036 1.934233591 1.68839506 2.13937788 1.699437538 1 9.460078293 -6.239071341 0.217700518 0.849208795 2.363178634 0.337274649 0.247638786 0.920741964 0.100674036 0.178935762 0.448280759 5.77E-07 6.239071341 1.513969839 QAPPHIELSNS(ph)SPDPMAEAER ddPTM_HeLa_CUDC101_4h_R1 1 QAPPHIELSNSSPDPMAEAER 21 0 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5;C9JVY5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 QAPPHIELSNS(0.937)S(0.063)PDPMAEAER 204 1.25E-19 39879000 2208.4 1873.3 1950.8 1593.2 2031.6 1905.2 1771.5 1545.3 2022.7 1764.5 TRUE FALSE FALSE 1949.5347 1931.014153 2056.266149 1658.177582 1881.732916 1868.861484 1839.827348 1721.210706 1939.32345 1754.004676 1.111476341 1.100917335 1.172326492 0.945366683 1.072820923 1.065482613 1.048929558 0.981303374 1.105654664 1 10.77643688 -6.238080133 24.99117368 1.066527809 1.029385716 0.212392368 0.057702611 1850.246052 1979508.006 0.009952124 0.016492513 5.78E-07 6.238080133 -0.037142093 YAEDIEGKQS(ph)EEEVKGSMK ddPTM_HeLa_CUDC101_4h_R1 1 YAEDIEGKQSEEEVKGSMK 19 2 H3BTW3;Q3L8U1-2;Q3L8U1-3;Q3L8U1 H3BTW3 CHD9 Chromodomain-helicase-DNA-binding protein 9 1 0 YAEDIEGKQS(0.998)EEEVKGS(0.002)MK 72.433 0.001941 0 743.63 744.63 641.13 592.05 461.66 688.33 461.97 734.26 457.93 717.45 TRUE FALSE FALSE 656.4628187 767.5711677 675.7914271 616.1963581 427.6042616 675.2012521 479.7883376 817.8451904 439.0539316 713.1825755 0.920469514 1.076261807 0.947571422 0.864009272 0.599571942 0.946743899 0.672742653 1.146754307 0.615626274 1 9.478127645 -6.237399228 4.285433482 0.971272034 0.826412405 0 0.182761251 0.258036025 11.47444496 0.020086139 0.033077721 5.79E-07 6.237399228 -0.144859629 AWSS(ph)QDEVSTNVR ddPTM_HeLa_CUDC101_4h_R1 2 AWSSQDEVSTNVR 13 0 A1L390-3;A1L390;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 AWS(0.047)S(0.953)QDEVSTNVR;AWS(0.043)S(0.957)QDEVSTNVR ; 126.56 9.38E-05 0 2662.7 2558.3 2610.1 2223.82 2249.5 2593.9 2239.8 2410.8 2867.8 2755.7 TRUE FALSE FALSE 2350.582342 2637.118191 2751.209901 2314.516992 2083.558867 2544.425679 2326.189836 2685.235727 2749.58807 2739.308974 0.858093178 0.962694685 1.0043445 0.844927321 0.760614771 0.928856768 0.849188558 0.98026026 1.003752441 1 11.41959629 -6.237397775 24.85779529 0.938852037 0.868344616 0.271500431 0.069309988 1031.798549 1066827.394 0.011487572 0.019043881 5.79E-07 6.237397775 -0.070507421 MTDEKNEHCPSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 MTDEKNEHCPSKR 13 2 Q9NR48;Q9NR48-2;F8VWK7 Q9NR48 ASH1L Histone-lysine N-methyltransferase ASH1L 0 1 MTDEKNEHCPSK(1)R 56.122 0.038131 700530 130.23 61.81 482.95 428.41 636.69 478.97 537.8 563.78 0 52.253 FALSE TRUE FALSE 114.9646368 63.71429284 509.0597378 445.8824115 589.7226472 469.8344453 558.5431262 627.9584363 0 51.94219683 2.213318724 1.226638393 9.800504578 8.584203956 11.35344062 9.04533258 10.75316718 12.08956253 0 1 5.698835127 -6.750498714 7.695615956 1.558905745 10.22524591 0.941139397 1.120160547 0.022183819 7.653046449 0.164149682 0.22694096 1.78E-07 6.750498714 8.666340165 MTDQEAIQDLWQWR ddPTM_HeLa_CUDC101_4h_R1 8 MTDQEAIQDLWQWR 14 0 P06748;P06748-2 P06748 NPM1 Nucleophosmin 0 0 ;;;;;;; ;;;;;;; 205.52 2.91E-17 2053849500 13185.93 12248.16 10316.9 10963.16 12099.65 11539.14 11813.25 11420.23 12733.49 12325.03 FALSE FALSE TRUE 11640.29527 12625.51129 10874.66282 11410.28505 11207.08293 11319.05013 12268.89101 12720.26282 12208.61015 12251.72017 0.950094771 1.030509277 0.887602938 0.931321063 0.914735463 0.92387436 1.001401504 1.038243009 0.996481309 1 13.5806967 -9.380951103 0.689231416 1.005965429 0.956127532 0.093304601 0.04732649 2.031718469 1.381395483 0.062173284 0.010137412 4.16E-10 9.380951103 -0.049837897 S(ph)GSS(ph)PGLR ddPTM_HeLa_CUDC101_4h_R1 1 SGSSPGLR 8 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.977)GS(0.432)S(0.591)PGLR 80.916 0.018092 5931200 7088.6 3966 4799.2 5418.7 4502.8 5652.5 4756.5 2447.6 6672.9 7368.3 TRUE FALSE FALSE 6257.685054 4088.187759 5058.659269 5639.698008 4170.637415 5544.68798 4939.959798 2726.22489 6397.840238 7324.473024 0.854352939 0.558154525 0.690651635 0.769980037 0.56941126 0.757008451 0.674445763 0.37220765 0.873488129 1 12.83850925 -6.237112908 0.093466283 1.415258214 4.99E-16 0.53384146 0.117465957 10.34580676 0.399956655 2.290154042 3.656984825 5.79E-07 6.237112908 -1.415258214 MTEK(ac)LEK ddPTM_HeLa_CUDC101_4h_R1 1 MTEKLEK 7 1 P51531;P51531-2;F6VDE0;A0A0U1RQZ9 P51531 SMARCA2 Probable global transcription activator SNF2L2 0 1 MTEK(1)LEK 92.062 0.029687 1709500 1419.1 1405.8 1174.7 1060.5 1304.6 1225.8 945.22 1321.3 1066.1 1278.1 FALSE TRUE FALSE 1252.755249 1449.111032 1238.207835 1103.751774 1208.362257 1202.419907 981.677452 1471.711451 1022.154907 1270.497804 0.986034958 1.140585231 0.97458479 0.868755357 0.951093542 0.94641636 0.772671506 1.158373864 0.80453103 1 10.31117817 -6.51728977 24.7765123 1.006798923 0.930272666 0.011732417 0.118589727 346.4170792 1535703.749 0.014293288 0.02058492 3.04E-07 6.51728977 -0.076526257 GYADS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 4 GYADSPSK 8 0 Q01518-2;Q01518;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9;Q5T0R8;Q5T0S3 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1;Adenylyl cyclase-associated protein 1 0 GYADS(0.998)PS(0.002)K;GYADS(0.968)PS(0.032)K;GYADS(1)PSK;GYADS(0.997)PS(0.003)K ;;; 140.17 0.0045456 814589000 44743.2 12688.2 42425.9 41298.2 19838.6 20339.9 21629.9 6586.1 45293.7 53249.1 TRUE FALSE FALSE 39498.46992 13079.1084 44719.57249 42982.5191 18375.146 19951.9503 22464.17249 7335.835002 43426.67451 52932.37199 0.746206309 0.247090918 0.844843539 0.812027073 0.347143824 0.376932859 0.424393838 0.138588821 0.820418071 1 15.69186268 -6.236211484 0.19930085 1.120823331 2.44E-13 0.528107642 0.195624597 2.708007847 0.261094223 0.395770076 0.94503998 5.80E-07 6.236211484 -1.120823331 S(ph)FTGGLGQLVVPSK ddPTM_HeLa_CUDC101_4h_R1 2 SFTGGLGQLVVPSK 14 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 S(0.494)FT(0.044)GGLGQLVVPS(0.462)K;S(0.687)FT(0.309)GGLGQLVVPS(0.003)K ; 125.86 0.0011086 144425000 11926.6 7277.6 8349.7 7171.1 6203.1 5805.7 6692.5 11473.3 6402.4 6384.6 TRUE FALSE FALSE 10528.58203 7501.81423 8801.110038 7463.568454 5745.509671 5694.965945 6950.631967 12779.3741 6138.490362 6346.624115 1.658926358 1.182016469 1.38673882 1.175990309 0.905285955 0.897322079 1.095169942 2.013570343 0.967205596 1 12.63177368 -6.235101065 20.166303 1.312476255 1.175543844 0 0.349086075 243.8331676 186690.2278 0.056386321 0.093446845 5.82E-07 6.235101065 -0.136932412 SAGAGSPARPPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SAGAGSPARPPSPR 14 1 P83369 P83369 LSM11 U7 snRNA-associated Sm-like protein LSm11 1 0 SAGAGSPARPPS(1)PR;SAGAGSPARPPS(1)PR ; 83.53 0.012103 68283000 4186.8 3322.9 3615.4 3000.6 3088.6 3206.5 2837.7 3002.1 4264.6 3905.5 TRUE FALSE FALSE 3696.029651 3425.27461 3810.85946 3122.977438 2860.760131 3145.341355 2947.15104 3343.846929 4088.811383 3882.269912 0.952027998 0.882286571 0.981606005 0.804420483 0.736878217 0.810181009 0.759130897 0.861312326 1.053201214 1 11.92268471 -6.234450476 5.963360085 0.968517507 0.789207344 0.75900281 0.050489468 0.061525938 7.451004512 0.00676874 0.011111967 5.83E-07 6.234450476 -0.179310163 PSSIPAPAEAEAWS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 PSSIPAPAEAEAWSPR 16 0 H7C1F0;F8WAB6;D3YTB5;P51617-4;P51617-2;P51617-3;P51617 H7C1F0 IRAK1 Interleukin-1 receptor-associated kinase 1 1 0 PSSIPAPAEAEAWS(1)PR 187.78 5.97E-11 13652000 3069.4 2624.1 2094.8 2385.2 2026.3 2106.3 2011.6 1548.8 2359 2801.2 TRUE FALSE FALSE 2709.609585 2704.945411 2208.051224 2482.478766 1876.823886 2066.125837 2089.188086 1725.109132 2261.761022 2784.538338 0.97309114 0.971416114 0.792968513 0.891522567 0.674016177 0.741999422 0.750281674 0.619531471 0.812257095 1 11.44322244 -6.234363275 0.728740735 0.995065976 0.678740716 0.59426056 0.07982317 0.173987013 0.180026933 0.010301718 0.026066388 5.83E-07 6.234363275 -0.31632526 RLS(ph)AQFENLMAESR ddPTM_HeLa_CUDC101_4h_R1 2 RLSAQFENLMAESR 14 1 Q9H7C4-2;Q9H7C4 Q9H7C4-2 SYNC Syncoilin 1 0 RLS(1)AQFENLMAESR;RLS(1)AQFENLMAESR ; 109.72 0.0019428 24002000 1819.26 1700.5 1596.14 1768.71 1909.33 2104.82 1788.47 1308.43 1865.12 1908.77 TRUE FALSE FALSE 1606.009101 1752.890389 1682.432156 1840.845639 1768.48253 2064.674065 1857.451887 1457.376382 1788.238964 1897.416551 0.846418832 0.92383003 0.886696258 0.970185296 0.932047593 1.088150129 0.978937327 0.768084573 0.942459874 1 10.88982072 -6.233814416 24.28260866 0.922521536 0.9561861 0.021584426 0.082201088 1826.860628 1605826.848 0.013748766 0.022795706 5.84E-07 6.233814416 0.033664564 STTSQVTPAEEKDGHS(ph)PMSK ddPTM_HeLa_CUDC101_4h_R1 4 STTSQVTPAEEKDGHSPMSK 20 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 STTSQVTPAEEKDGHS(0.876)PMS(0.124)K;STTSQVT(0.001)PAEEKDGHS(0.767)PMS(0.233)K;STTSQVT(0.009)PAEEKDGHS(0.709)PMS(0.281)K;STTSQVT(0.004)PAEEKDGHS(0.967)PMS(0.029)K ;;; 73.781 0.0038964 53728600 14890.7 11787.3 12153.7 13734.1 15453.3 14102.4 13113.7 11902.2 14060.5 14284.2 TRUE FALSE FALSE 13145.23472 12150.45274 12810.76578 14294.23596 14313.34085 13833.42022 13619.4998 13257.09834 13480.92024 14199.23694 0.925770502 0.855711669 0.902215086 1.006690431 1.008035918 0.974236874 0.959171247 0.933648645 0.949411598 1 13.79352578 -6.233721521 24.92099318 0.949849103 0.977044069 0.160110761 0.042750233 1802.667877 1620770.996 0.008063482 0.013369568 5.84E-07 6.233721521 0.027194966 MTQGDLVMSMDQLLTK ddPTM_HeLa_CUDC101_4h_R1 1 MTQGDLVMSMDQLLTK 16 0 Q9Y2I7;E9PDH4 Q9Y2I7 PIKFYVE 1-phosphatidylinositol 3-phosphate 5-kinase 0 0 49.5 0.0030552 0 1237.9 844.2 904.39 748.05 1033.5 815.43 920.24 1033.4 869.61 1032.7 FALSE FALSE TRUE 1092.795239 870.2088014 953.284059 778.5587123 957.260764 799.8770313 955.7339651 1151.038079 833.7643077 1026.557454 1.064524186 0.847696149 0.928622217 0.758417085 0.932496043 0.779183891 0.931008743 1.121260261 0.81219449 1 10.00359866 -7.264374648 24.97255105 1.030469756 0.893299274 0 0.117982919 225.6321941 1919619.919 0.015886295 0.018588404 5.44E-08 7.264374648 -0.137170482 MTVSGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 MTVSGKK 7 1 E9PS53;E9PHZ9;B7Z524;H0YDX7;J3QT46;Q9Y450-4;Q9Y450 E9PS53 HBS1L HBS1-like protein 0 1 MTVSGK(1)K 75.109 0.032949 0 1953.7 1628 1956.6 1820 2061.2 1944.3 1719.3 1487 1453 1570.7 FALSE TRUE FALSE 1724.690248 1678.15675 2062.379714 1894.227467 1909.149382 1907.215717 1785.613977 1656.274069 1393.106725 1561.357407 1.104609515 1.074806283 1.32088893 1.213192738 1.222749753 1.221511301 1.143629235 1.060791118 0.892240764 1 10.6085851 -7.733055678 0.864691112 1.023059107 1.191385482 0.521321869 0.082510544 0.324754783 0.517509974 0.020420262 0.01838007 1.85E-08 7.733055678 0.168326375 MVAEVCSMPTASTVK ddPTM_HeLa_CUDC101_4h_R1 1 MVAEVCSMPTASTVK 15 0 A0A087X1W7;Q86YR6 A0A087X1W7 POTED POTE ankyrin domain family member D 0 0 105.2 0.019995 18679000 1303.2 1293.7 1071.2 1174.7 1206.1 948.13 1146.8 1132.4 1139.6 903.18 FALSE FALSE TRUE 1150.440872 1333.557364 1129.112312 1222.609343 1117.128406 930.0459999 1191.03246 1261.307839 1092.625206 897.8078452 1.281388749 1.485348308 1.257632486 1.361771731 1.244284522 1.035907633 1.326600638 1.404875047 1.216992268 1 9.810262893 -8.953368327 0.853846285 1.005791439 1.294189569 0.193147136 0.129210359 0.400343852 0.550021574 0.068414829 0.023520524 1.11E-09 8.953368327 0.28839813 S(ph)VSEINS(ph)DDELSGK ddPTM_HeLa_CUDC101_4h_R1 2 SVSEINSDDELSGK 14 0 F8WF45;A0A2R8Y7M0;P82094;P82094-2 F8WF45 TMF1 TATA element modulatory factor 2 0 S(1)VSEINS(1)DDELSGK;S(0.999)VS(0.001)EINS(1)DDELSGK ; 228.99 2.15E-32 23828000 14041.4 10494.4 11232.3 10266.9 11906.4 10929.9 10436.3 10095.8 10075.8 10423.5 TRUE FALSE FALSE 12395.48838 10817.72003 11839.55211 10685.62856 11028.08859 10721.43037 10838.83159 11245.06506 9660.471259 10361.50056 1.196302438 1.044030251 1.142648408 1.031281956 1.064333156 1.034737228 1.046067751 1.085273798 0.932342879 1 13.33894533 -6.233158947 24.68645152 1.094034329 1.05167888 0 0.072341118 1438.618581 1255792.086 0.011286077 0.018713756 5.85E-07 6.233158947 -0.042355449 RILIPS(ph)DIESSK ddPTM_HeLa_CUDC101_4h_R1 1 RILIPSDIESSK 12 1 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 RILIPS(0.998)DIES(0.002)SK 77.324 0.021741 8074200 2716.8 2821.7 2365.5 2785.8 3112.9 3145.4 3100.9 2458 3158.7 2601.4 TRUE FALSE FALSE 2398.340822 2908.633232 2493.386085 2899.416965 2883.267569 3085.406736 3220.502752 2737.808784 3028.497049 2585.926757 0.927458914 1.124793355 0.96421373 1.121229345 1.114984236 1.193153181 1.245395966 1.058734079 1.171145718 1 11.3364657 -6.231643992 0.984265144 0.970289567 1.173477706 0.099781509 0.092700068 0.254739542 0.487844342 0.01194624 0.026092473 5.87E-07 6.231643992 0.203188139 MVFETGQFDDAED ddPTM_HeLa_CUDC101_4h_R1 2 MVFETGQFDDAED 13 0 Q9NQ92;H9KV77 Q9NQ92 COPRS Coordinator of PRMT5 and differentiation stimulator 0 0 ; ; 169.09 3.00E-06 40477000 10992.3 10217.7 9531.1 10090.6 11292.7 8842 9664.2 9358.1 10550.3 10141.8 FALSE FALSE TRUE 9703.799257 10532.49523 10046.3801 10502.13828 10459.66002 8673.353582 10036.95143 10423.38828 10115.41217 10081.47612 0.962537543 1.044737407 0.996518761 1.041726247 1.03751275 0.860325757 0.995583515 1.03391489 1.003366178 1 13.29941927 -4.289729779 5.697963253 0.987174627 1.034755081 0.041300342 0.051064055 0.29930551 32.0584326 0.006879247 0.046742356 5.13E-05 4.289729779 0.047580454 MVGFIIGR ddPTM_HeLa_CUDC101_4h_R1 2 MVGFIIGR 8 0 Q96I24;Q96I24-2 Q96I24 FUBP3 Far upstream element-binding protein 3 0 0 ; ; 121.68 0.017683 980960 364.13 234.416 168.46 229.25 318.7 364.96 0 123.96 364.86 368.66 FALSE FALSE TRUE 321.4472334 241.6380791 177.5674572 238.5998059 295.1901359 357.9989961 0 138.0711053 349.8203164 366.4671939 0.877151458 0.659371652 0.48453848 0.651080942 0.805502214 0.976892344 0 0.376762525 0.954574713 1 8.517540244 -5.009845149 0.246385841 1.032204884 1.97E-12 0.416213606 0.23103864 5.089509613 0.346893578 0.200256784 1.583993146 9.78E-06 5.009845149 -1.032204884 SGAQASSTPLS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 5 SGAQASSTPLSPTR 14 0 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 SGAQASSTPLS(0.838)PT(0.162)R;SGAQASST(0.001)PLS(0.5)PT(0.5)R;SGAQASSTPLS(0.788)PT(0.212)R;SGAQASSTPLS(0.945)PT(0.055)R;SGAQASSTPLS(0.942)PT(0.058)R ;;;; 160.81 4.48E-05 3457628000 9901.8 7643.4 8775.6 7694.85 7013.8 6338.75 5515.01 3288 8871.2 8958.4 TRUE FALSE FALSE 8741.126014 7878.884094 9250.035481 8008.679243 6496.405947 6217.848905 5727.725783 3662.292629 8505.525381 8905.115038 0.981584851 0.884759384 1.038732845 0.899334732 0.729513984 0.698233417 0.643195035 0.411257195 0.955128075 1 13.12041853 -4.239511182 0.484106038 0.998725921 0.019051903 0.914173966 0.055296876 0.783070084 0.120801974 0.01139311 0.438165085 5.76E-05 4.239511182 -0.979674018 down SYQNSPS(ph)S(ph)DDGIRPLPEYSTEK ddPTM_HeLa_CUDC101_4h_R1 1 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 0 S(0.01)Y(0.005)QNS(0.456)PS(0.693)S(0.693)DDGIRPLPEY(0.124)S(0.015)T(0.004)EK 72.383 0.0031943 36131000 7103.6 5786.6 6187.4 5374 6452.3 5701.4 5636.3 4923.1 6211.6 5978.5 TRUE FALSE FALSE 6270.926776 5964.878287 6521.90956 5593.174948 5976.326684 5592.655294 5853.693979 5483.525804 5955.555219 5942.939616 1.055189381 1.003691552 1.097421475 0.941146185 1.005617938 0.941058745 0.984982914 0.922695864 1.002122788 1 12.53696101 -6.231615393 24.99561147 1.029555451 0.962120248 0.513573617 0.035228466 468.1831245 392386.5196 0.005204351 0.008629664 5.87E-07 6.231615393 -0.067435203 LKATVTPS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 LKATVTPSPVK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 LKATVT(0.009)PS(0.991)PVK;LKATVT(0.008)PS(0.992)PVK ; 84.046 0.018672 1071190000 28248 16856 10821.7 18619.7 19569.2 17732.8 16401.1 17018.2 11842 5457.3 TRUE FALSE FALSE 24936.81226 17375.31338 11406.75384 19379.09185 18125.6191 17394.57638 17033.69592 18955.4831 11353.86775 5424.839737 4.596783218 3.202917362 2.102689552 3.57228836 3.34122665 3.206468251 3.139944542 3.494201491 2.092940676 1 12.4053648 -6.230702062 23.92829378 2.746859718 3.330557055 0.145218807 0.875291333 1234.363536 960922.3969 0.204886293 0.339730429 5.88E-07 6.230702062 0.583697337 NVT(ph)PNSYAEPLAAPGGGER ddPTM_HeLa_CUDC101_4h_R1 3 NVTPNSYAEPLAAPGGGER 19 0 Q9NYD6 Q9NYD6 HOXC10 Homeobox protein Hox-C10 1 0 NVT(0.958)PNS(0.042)YAEPLAAPGGGER;NVT(1)PNSYAEPLAAPGGGER;NVT(1)PNSYAEPLAAPGGGER ;; 227.09 6.81E-33 38304000 5800.2 5302.2 4946.8 4520.2 4995.4 4557.8 4801.3 4022.42 5309.9 5167.1 TRUE FALSE FALSE 5120.309349 5465.554497 5214.238971 4704.553294 4626.899294 4470.867559 4986.487749 4480.316034 5091.023675 5136.365859 0.996873955 1.064089796 1.01516113 0.915930333 0.900811862 0.870434015 0.970820204 0.872273541 0.991172322 1 12.32653225 -6.230700137 6.284861536 1.005606677 0.906925478 0.730335351 0.032466657 0.082521557 10.97023874 0.004765358 0.007842264 5.88E-07 6.230700137 -0.098681199 AGEIS(ph)GEVSTGSPQK ddPTM_HeLa_CUDC101_4h_R1 1 AGEISGEVSTGSPQK 15 0 C9K0U2 C9K0U2 FBXO24 1 0 AGEIS(0.916)GEVS(0.04)T(0.04)GS(0.005)PQK 70.68 0.038103 32679000 2502.2 2284.8 2063.1 1955.7 1917.9 2008.7 1819.1 2256.7 2097.7 2116 TRUE FALSE FALSE 2208.895909 2355.19198 2174.637427 2035.461899 1776.420338 1970.387394 1889.263296 2513.593606 2011.231918 2103.413938 1.050147985 1.119699712 1.0338609 0.967694405 0.844541488 0.93675684 0.898189017 1.195006632 0.956175046 1 11.03851708 -6.23064943 5.612163035 1.033757932 0.955362094 0.095324745 0.093924397 0.286487154 27.3351795 0.013378863 0.022020551 5.88E-07 6.23064943 -0.078395837 TAPSS(ph)PLTSPSDTR ddPTM_HeLa_CUDC101_4h_R1 2 TAPSSPLTSPSDTR 14 0 A0A087WVA8;Q8IWB9;Q8IWB9-2 A0A087WVA8 TEX2 Testis-expressed sequence 2 protein 1 0 T(0.001)APS(0.202)S(0.68)PLT(0.024)S(0.055)PS(0.036)DT(0.002)R;TAPS(0.207)S(0.793)PLTSPSDTR ; 163.33 2.99E-05 21889000 2695.5 2336.8 1961.71 2791.8 2947.3 2688.4 2611.7 2845.9 2317.7 2560.1 TRUE FALSE FALSE 2379.537576 2408.794038 2067.765976 2905.661671 2729.883551 2637.123249 2712.434144 3169.865752 2222.163425 2544.872411 0.935032171 0.94652841 0.812522454 1.14177106 1.072699574 1.036249691 1.065842881 1.245589263 0.873192469 1 11.31337761 -6.230576897 24.99714555 0.955778623 1.103402765 0.605580331 0.076397925 439.0315394 355594.7672 0.010968778 0.018188469 5.88E-07 6.230576897 0.147624143 MVNHFIAEFK ddPTM_HeLa_CUDC101_4h_R1 3 MVNHFIAEFK 10 0 P11142;E9PKE3;P11142-2;E9PN89;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ;; ;; 92.611 0.0063014 23911350 16283.3 12264.8 9902.19 12185.8 13172.5 12185.7 10798.8 11633.3 10783.4 9180.95 FALSE FALSE TRUE 14374.59626 12642.66395 10437.53234 12682.7896 12200.79092 11953.27808 11215.31333 12957.58785 10338.90369 9126.341301 1.575066698 1.385293792 1.143671051 1.389690477 1.336876467 1.309755759 1.228894796 1.419800928 1.132864019 1 13.15582089 -9.568741291 1.360667261 1.000918097 1.369618899 0.469520642 0.115988664 0.268988812 0.896222606 0.090015614 0.021350077 2.70E-10 9.568741291 0.368700801 AVT(ph)PVSQGSNSSSADPK ddPTM_HeLa_CUDC101_4h_R1 2 AVTPVSQGSNSSSADPK 17 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 AVT(0.999)PVS(0.001)QGSNSSSADPK;AVT(0.997)PVS(0.003)QGSNSSSADPK ; 244.27 4.43E-55 89991000 20048.7 18336.1 17398.4 15446.6 18531 15618.1 16445 16288.5 16192 16498.5 TRUE FALSE FALSE 17698.62178 18901.01351 18339.01013 16076.57911 17164.00505 15320.21076 17079.28916 18142.717 15524.55891 16400.36619 1.079160159 1.152475091 1.118207357 0.980257327 1.046562305 0.934138335 1.041396818 1.106238531 0.946598309 1 14.00144041 -6.230569298 24.95827833 1.054304685 1.019326534 0.067747477 0.068157504 1700.227348 1374623.106 0.010121196 0.016782891 5.88E-07 6.230569298 -0.034978151 MVQDGDFVR ddPTM_HeLa_CUDC101_4h_R1 1 MVQDGDFVR 9 0 Q96AY3;K7ESG6 Q96AY3 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10;Peptidyl-prolyl cis-trans isomerase 0 0 132.76 0.013814 14054000 2360 2099.8 1751.9 2112.9 2149.8 2185.8 1843.9 1920.3 1846.6 1461.9 FALSE FALSE TRUE 2083.364378 2164.492349 1846.613013 2199.073195 1991.213537 2144.109507 1915.019841 2138.89919 1770.482366 1453.204554 1.433634633 1.489461579 1.270717882 1.513257847 1.370222473 1.475435445 1.317790971 1.471850046 1.218329768 1 10.50502208 -9.189995677 0.721001281 0.969638956 1.419260244 0.572782339 0.09931556 0.24349424 0.205464838 0.065685665 0.014525322 6.46E-10 9.189995677 0.449621288 MVQEAEK(ac)YK ddPTM_HeLa_CUDC101_4h_R1 1 MVQEAEKYK 9 1 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37 P11142;A0A0G2JIW1 HSPA8;HSPA1B;HSPA1A Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A 0 1 MVQEAEK(1)YK 129.38 1.01E-06 0 0 0 140.65 0 209.62 177.09 171.29 149.54 0 0 FALSE TRUE FALSE 0 0 148.2539644 0 194.1567502 173.7123033 177.8967127 166.5630291 0 0 0 MVQQLQEDVDMEDAP ddPTM_HeLa_CUDC101_4h_R1 2 MVQQLQEDVDMEDAP 15 0 Q9UHA3 Q9UHA3 RSL24D1 Probable ribosome biogenesis protein RLP24 0 0 ; ; 202.56 5.90E-16 21596000 7340.2 6577.7 6034.2 6243.8 6922.3 7302.3 6005.2 6235 6873.4 6107.2 FALSE FALSE TRUE 6479.792883 6780.351141 6360.427104 6498.449152 6411.65572 7163.020794 6236.822576 6944.767197 6590.075543 6070.874103 1.06735748 1.116865714 1.047695438 1.070430558 1.056133863 1.179899414 1.027335186 1.143948479 1.085523342 1 12.56768854 -13.52287875 0.129993786 0.679627402 1.128478275 0.022498751 0.05089071 55.7263738 0.513764089 4.569364517 0.145739534 3.00E-14 13.52287875 0.448850873 MVREFLAEFMSTYVMMR ddPTM_HeLa_CUDC101_4h_R1 1 MVREFLAEFMSTYVMMR 17 1 A0A096LNV7;A0A096LP64;A0A096LP23 A0A096LNV7 AQP7 0 0 53.981 0.024957 27497000 10739 5831.2 7111.1 5822.8 4632.1 4562.8 4942.8 6243.1 5676 9216.3 FALSE FALSE TRUE 9480.190699 6010.85236 7495.547576 6060.278952 4290.399211 4475.772192 5133.445452 6953.789269 5442.032878 9161.481038 1.034788006 0.656100508 0.818158936 0.661495552 0.468308475 0.488542428 0.560329212 0.759024577 0.59401235 1 13.16136513 -6.903330986 1.114994897 1.021557496 0.574663818 0.167248218 0.171187777 0.153162525 0.376451631 0.0205933 0.029170794 1.25E-07 6.903330986 -0.446893678 ASLVS(ph)EEEEDEEEDKATPR ddPTM_HeLa_CUDC101_4h_R1 3 ASLVSEEEEDEEEDKATPR 19 1 Q96GN5-5;Q96GN5-2;Q96GN5;C9J8L0;C9IZR6;Q96GN5-4 Q96GN5-5 CDCA7L Cell division cycle-associated 7-like protein 1 0 AS(0.007)LVS(0.993)EEEEDEEEDKATPR;AS(0.012)LVS(0.988)EEEEDEEEDKATPR;AS(0.083)LVS(0.917)EEEEDEEEDKATPR ;; 189.15 6.37E-12 189930200 6354.3 4808.34 4366.98 4398.84 3583.15 3651.83 3389.94 2690.91 5341.8 5661.79 TRUE FALSE FALSE 5609.458586 4956.479256 4603.072148 4578.243709 3318.828163 3582.177427 3520.691121 2997.232317 5121.608743 5628.113421 0.99668542 0.880664423 0.817871248 0.813459745 0.589687505 0.636479253 0.625554401 0.532546538 0.910004536 1 12.45843569 -6.229777706 0.756981513 1.004475894 0.567142986 0.901456298 0.051279397 0.09536826 0.106756519 0.008006427 0.019940987 5.89E-07 6.229777706 -0.437332908 AGDT(ph)SDQEGHSLEEK ddPTM_HeLa_CUDC101_4h_R1 1 AGDTSDQEGHSLEEK 15 0 A0A087WU18;Q99607 A0A087WU18 ELF4 ETS-related transcription factor Elf-4 1 0 AGDT(0.5)S(0.5)DQEGHSLEEK 104.84 0.0053074 35671000 8056.9 6702.4 6715.5 5881.3 6181.1 5841.9 5729.3 5643.5 7701.5 7291.4 TRUE FALSE FALSE 7112.482395 6908.893 7078.560243 6121.164835 5725.132567 5730.475491 5950.28102 6285.933228 7384.04091 7248.030429 0.981298639 0.953209712 0.97661845 0.844528027 0.789888043 0.790625198 0.82095144 0.867260877 1.018765164 1 12.8233733 -6.229573462 3.173347148 0.987487131 0.815191816 0.913141078 0.025303816 0.049659369 1.020049617 0.003826141 0.006425442 5.89E-07 6.229573462 -0.172295315 MVSDINNGWQHLEQAEK ddPTM_HeLa_CUDC101_4h_R1 1 MVSDINNGWQHLEQAEK 17 0 O43707;O43707-2 O43707 ACTN4 Alpha-actinin-4 0 0 95.873 0.0042039 16156000 2106.1 1831.8 1371.4 1194.2 1649.2 1562.3 1641.2 1904.7 1749 2329.4 FALSE FALSE TRUE 1859.226151 1888.235587 1445.542032 1242.904638 1527.541802 1532.50173 1704.501634 2121.523349 1676.90548 2315.544625 0.80293255 0.815460677 0.624277337 0.536765573 0.659690072 0.661832086 0.736112626 0.916209226 0.724194844 1 11.17713585 -8.114864241 0.680910762 0.979398049 0.690646223 0.087770972 0.126429976 0.354276086 0.364281293 0.04359815 0.027401122 7.68E-09 8.114864241 -0.288751826 QVLTAPGSAGQPRS(ph)EDEDSLEEAGSPAPGPCPR ddPTM_HeLa_CUDC101_4h_R1 1 QVLTAPGSAGQPRSEDEDSLEEAGSPAPGPCPR 33 1 Q8TBB5-2;Q8TBB5-3;Q8TBB5 Q8TBB5-2 KLHDC4 Kelch domain-containing protein 4 1 0 QVLTAPGS(0.121)AGQPRS(0.879)EDEDSLEEAGSPAPGPCPR 124.96 1.52E-18 16509000 530.77 603.49 445.1 574.25 677.56 731.86 528.6 691.24 580.65 405.89 TRUE FALSE FALSE 468.5539452 622.0828116 469.1634524 597.6703971 627.5777487 717.9009899 548.9882791 769.9279675 556.7153612 403.4757482 1.16129395 1.541809673 1.162804591 1.48130439 1.555428676 1.779291551 1.360647527 1.908238527 1.37979882 1 8.65633815 -6.229474176 0.306549224 0.962998654 1.875249387 0.431769804 0.201891082 0.910413158 0.168974303 0.102110918 0.302822132 5.90E-07 6.229474176 0.912250733 MVSSYVGENAEFER ddPTM_HeLa_CUDC101_4h_R1 1 MVSSYVGENAEFER 14 0 P55809 P55809 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" 0 0 136.01 0.0035952 9650200 458.75 599.3 416.4 548.21 588.42 497.89 633.85 478.51 509.85 573.29 FALSE FALSE TRUE 404.9760204 617.7637227 438.9118435 570.5683734 545.0134289 488.3935778 658.2978068 532.9816442 488.8337672 569.8800456 0.710633797 1.084024134 0.77018286 1.001207847 0.956365174 0.857011193 1.15515153 0.935252337 0.857783618 1 9.154514467 -5.4683414 0.840937449 0.873952826 1.026284427 0.100415632 0.123387608 1.23847442 1.470715938 0.024313517 0.11936801 3.40E-06 5.4683414 0.152331601 RQSSGSATNVAST(ph)PDNR ddPTM_HeLa_CUDC101_4h_R1 1 RQSSGSATNVASTPDNR 17 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 RQSSGSATNVAS(0.388)T(0.612)PDNR 140.27 0.0019643 789270 200.76 128.7 174.86 232.09 433.34 286.3 198.28 173.83 252.95 163.63 TRUE FALSE FALSE 177.2272171 132.6650945 184.3134605 241.5556334 401.3733715 280.8393045 205.927726 193.6181046 242.5232939 162.6567215 1.089578196 0.815613971 1.133143831 1.48506395 2.467610117 1.726576694 1.266026538 1.190348009 1.491013047 1 7.34568663 -6.229001519 3.860759641 1.026400649 1.670225052 0.335896873 0.362776532 0.163681961 5.363133659 0.052652425 0.087438284 5.90E-07 6.229001519 0.643824403 PAS(ph)PSLQLLPWR ddPTM_HeLa_CUDC101_4h_R1 2 PASPSLQLLPWR 12 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 PAS(0.908)PS(0.092)LQLLPWR;PAS(0.5)PS(0.5)LQLLPWR ; 137.81 0.0013178 146308000 3555.6 2397.92 1499.81 2086.1 1718.12 1328.96 1392.4 692.84 1672.08 2580.7 TRUE FALSE FALSE 3138.817958 2471.797073 1580.894265 2171.180175 1591.377711 1303.612302 1446.105334 771.710105 1603.156155 2565.349882 1.223543806 0.963532145 0.616248987 0.846348559 0.620335543 0.508161601 0.563706863 0.300820606 0.624926902 1 11.32493989 -6.228104372 0.797105274 1.106718721 0.449407425 0.431535788 0.196830024 0.215854228 0.268911605 0.028250664 0.06859755 5.91E-07 6.228104372 -0.657311297 ADEGKKETS(ph)PESSLIQDEIAVK ddPTM_HeLa_CUDC101_4h_R1 1 ADEGKKETSPESSLIQDEIAVK 22 2 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 ADEGKKET(0.13)S(0.794)PES(0.038)S(0.038)LIQDEIAVK 72.145 0.0024377 35922000 2607.9 2425 2420.6 2673.9 3305.8 2532.2 2525.9 2936.5 3093.9 2808.9 TRUE FALSE FALSE 2302.205915 2499.711376 2551.464958 2782.9532 3061.93772 2483.902504 2623.324809 3270.77929 2966.368132 2792.192538 0.82451546 0.89525036 0.913785465 0.99669101 1.096606942 0.889588547 0.93952146 1.171401773 1.062379507 1 11.44718271 -6.227828047 4.86377678 0.912675756 1.012494285 0.118992057 0.095371075 0.257163827 15.66445157 0.014483183 0.023909219 5.92E-07 6.227828047 0.099818529 S(ph)LIYTDTLVR ddPTM_HeLa_CUDC101_4h_R1 1 SLIYTDTLVR 10 0 Q5SYE7-2 Q5SYE7-2 NHSL1 NHS-like protein 1 1 0 S(0.971)LIYT(0.028)DT(0.001)LVR 98.156 0.018254 8654700 1918 1642.3 1779.1 1369.4 1687.6 1400.5 1224.2 1397.2 1755.5 1650.6 TRUE FALSE FALSE 1693.174947 1692.897316 1875.283527 1425.250051 1563.10911 1373.787796 1271.417804 1556.2516 1683.137547 1640.782158 1.031931594 1.031762387 1.142920478 0.868640632 0.952660963 0.837276167 0.774885196 0.948481548 1.025814145 1 10.68016799 -6.227708029 24.44493852 1.025694994 0.87281417 0.651817316 0.061195825 249.8964264 181098.5982 0.00909756 0.015086013 5.92E-07 6.227708029 -0.152880823 LTASPS(ph)DPK ddPTM_HeLa_CUDC101_4h_R1 3 LTASPSDPK 9 0 E7EWD6;Q76L83;A0A5F9ZHN2;Q76L83-2 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 LT(0.004)AS(0.281)PS(0.715)DPK;LTAS(0.304)PS(0.696)DPK;LTAS(0.3)PS(0.7)DPK ;; 103.26 0.014691 115225100 17285.3 14830.9 14404.1 14062.7 15066.8 14566.9 13355 14685.8 16105.4 15231.4 TRUE FALSE FALSE 15259.14334 15287.82245 15182.82922 14636.23769 13955.35218 14289.06065 13870.10682 16357.57211 15441.5286 15140.80296 1.007815991 1.009710152 1.002775696 0.966675132 0.921704894 0.943745236 0.91607472 1.080363582 1.019861935 1 13.8861541 -6.227540546 4.56082861 1.004352512 0.958764375 0.185317989 0.043042969 0.241761879 12.26473365 0.006028589 0.009965522 5.92E-07 6.227540546 -0.045588137 QS(ph)PNSSSAAASVASR ddPTM_HeLa_CUDC101_4h_R1 2 QSPNSSSAAASVASR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 QS(0.836)PNS(0.083)S(0.054)S(0.026)AAASVASR;QS(0.999)PNS(0.001)SSAAASVASR ; 140.96 0.00042043 28956000 3428.8 2464 2577.3 2668 2517.2 2396 2233.8 1989.46 2745.8 3081.3 TRUE FALSE FALSE 3026.881262 2539.912919 2716.636634 2776.812572 2331.511171 2350.300292 2319.958414 2215.932085 2632.616962 3062.972291 0.988216991 0.829231439 0.886928244 0.9065745 0.761192381 0.767326658 0.757420634 0.723458091 0.859497479 1 11.5807166 -6.22712515 0.49074909 1.00682427 0.709160997 0.570377941 0.060768439 0.281174907 0.127030696 0.011884684 0.03591426 5.93E-07 6.22712515 -0.297663272 MYEEHLK ddPTM_HeLa_CUDC101_4h_R1 1 MYEEHLK 7 0 P84090;G3V279 P84090 ERH Enhancer of rudimentary homolog 0 0 101.28 0.018881 13955000 6120.1 4588.7 4636.9 4689.2 4893.1 4654 4376.7 4406.7 4754.5 5533.6 FALSE FALSE TRUE 5402.711155 4730.072408 4887.58484 4880.445844 4532.145761 4565.232704 4545.510785 4908.340916 4558.517498 5500.685901 0.982188631 0.859905927 0.88854098 0.887243142 0.823923751 0.829938809 0.826353452 0.892314341 0.828718014 1 12.42539581 -7.274506822 3.926467082 0.992488957 0.856090024 0.103332871 0.057322391 0.056491047 1.978636475 0.00450098 0.00529011 5.31E-08 7.274506822 -0.136398933 MYEEHLK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 MYEEHLKR 8 1 P84090;G3V279 P84090 ERH Enhancer of rudimentary homolog 0 1 MYEEHLK(1)R 101.72 0.0098003 3451500 1846 827.48 668.44 580.78 1957.9 1602 1947.5 1788.5 1824.5 1099.6 FALSE TRUE FALSE 1629.614678 852.973678 704.5778883 604.4667187 1813.469618 1571.444519 2022.615727 1992.095611 1749.293338 1093.05953 1.490874589 0.780354276 0.64459242 0.55300439 1.659076718 1.437656848 1.850416808 1.822495075 1.600364197 1 10.09415626 -5.575350186 23.86124258 1.108131642 1.689904991 0.481700115 0.337331244 50.61553025 23016.99713 0.05336871 0.106737449 2.66E-06 5.575350186 0.581773348 LQADPKPIS(ph)PQQK ddPTM_HeLa_CUDC101_4h_R1 1 LQADPKPISPQQK 13 1 O75128-3;O75128;O75128-7;O75128-6;H7C1N2;J3KR05;O75128-2 O75128-3;H7C1N2 COBL Protein cordon-bleu 1 0 LQADPKPIS(1)PQQK 67.646 0.032445 89951000 4636 4032.9 4351.9 3336.4 4081.6 3761.9 3451.5 3928.4 4007.9 3960.6 TRUE FALSE FALSE 4092.575108 4157.148869 4587.176878 3472.472813 3780.5085 3690.148025 3584.625511 4375.593177 3842.692666 3937.042175 1.039505021 1.055906613 1.165132776 0.88200041 0.960240793 0.937289432 0.910486947 1.111390984 0.976035433 1 11.94289645 -6.226359975 24.99994698 1.032502671 0.956235735 0.245814707 0.073813623 730.1552504 520357.9615 0.010517835 0.017441179 5.94E-07 6.226359975 -0.076266936 MYGISLCQAILDETKGDYEK ddPTM_HeLa_CUDC101_4h_R1 2 MYGISLCQAILDETKGDYEK 20 1 P04083 P04083 ANXA1 Annexin A1 0 0 ; ; 174.68 5.92E-08 21669000 4617.33 3881.58 3743.44 3837.77 4735.7 4287.66 4135.97 4218.36 4118.35 2083.59 FALSE FALSE TRUE 4076.093577 4001.166879 3945.82169 3994.290849 4386.356846 4205.880029 4295.495748 4698.561051 3948.58987 2071.196714 1.967989592 1.931814034 1.905092676 1.928494199 2.117788627 2.030652135 2.073919739 2.268524771 1.906429188 1 11.01624887 -10.11588818 0.310483869 0.128148741 2.136019271 0.132428551 0.301152731 0.849549279 0.069495869 0.633753269 0.041066012 7.66E-11 10.11588818 2.00787053 MYIALTGLQHAGR ddPTM_HeLa_CUDC101_4h_R1 1 MYIALTGLQHAGR 13 0 H0Y8Z9;Q9H845 H0Y8Z9 ACAD9 "Acyl-CoA dehydrogenase family member 9, mitochondrial" 0 0 128.36 0.00013958 0 140.96 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 124.4368825 0 0 0 0 0 0 0 0 0 0 T(ph)TKSPSDSGYSYETIGK ddPTM_HeLa_CUDC101_4h_R1 1 TTKSPSDSGYSYETIGK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.35)T(0.35)KS(0.291)PS(0.009)DSGYSYETIGK 80.609 0.013922 605440000 2124.6 1820.5 1739.8 2262.6 2640 2447 2091 1836.8 2404.6 2343.2 TRUE FALSE FALSE 1875.557609 1876.587447 1833.858851 2354.878608 2445.25246 2400.327552 2171.65057 2045.893887 2305.48137 2329.262542 0.805215202 0.805657333 0.787313073 1.0109975 1.049796841 1.030509661 0.93233396 0.878344047 0.989790257 1 11.18565755 -6.225800331 24.93673718 0.888146393 0.984365926 0.275641845 0.082316315 794.0114043 555571.9121 0.015145641 0.025115543 5.95E-07 6.225800331 0.096219534 TEPTS(ph)PTPSAFK ddPTM_HeLa_CUDC101_4h_R1 1 TEPTSPTPSAFK 12 0 Q86XN7-2;Q86XN7 Q86XN7-2 PROSER1 Proline and serine-rich protein 1 1 0 TEPT(0.076)S(0.916)PT(0.007)PSAFK 140.14 0.0012444 66921000 3965.2 3103.7 3466 2937.9 3231.6 2938.8 3136 2887.8 3455.4 3308 TRUE FALSE FALSE 3500.405267 3199.321318 3653.382444 3057.720261 2993.211306 2882.747286 3256.95657 3216.535479 3312.966949 3288.323869 1.064495289 0.972933764 1.111016612 0.92987199 0.910254411 0.876661607 0.990461007 0.978168699 1.007494116 1 11.68313668 -6.225311086 24.5604854 1.031493188 0.935201648 0.508427709 0.046246698 306.6158041 208441.3547 0.007096464 0.01176791 5.95E-07 6.225311086 -0.09629154 VTENLASLT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 VTENLASLTPK 11 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 0 VTENLAS(0.035)LT(0.965)PK;VTENLAS(0.001)LT(0.999)PK ; 139.74 0.0068872 39427000 9303.9 6491.6 5892.6 5922.1 6610.4 5836.1 5223.9 3995.5 6332.1 7402.2 TRUE FALSE FALSE 8213.310946 6691.598502 6211.17178 6163.628836 6122.763962 5724.786116 5425.387573 4450.33157 6071.088158 7358.171385 1.116216315 0.909410525 0.844118933 0.837657689 0.832104016 0.778017501 0.737328242 0.604814884 0.825081102 1 12.84513156 -6.224996315 0.69936865 1.055557781 0.692669562 0.488628869 0.094868422 0.242294428 0.229715489 0.015886702 0.041396276 5.96E-07 6.224996315 -0.362888218 AS(ph)ASPGENDSGTGGEEPQR ddPTM_HeLa_CUDC101_4h_R1 1 ASASPGENDSGTGGEEPQR 19 0 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 AS(0.77)AS(0.23)PGENDSGTGGEEPQR 227.06 1.42E-33 6303200 1724.3 1229.1 1486.3 1183.2 1133.8 1173.4 1581 1302 1346 1319.2 TRUE FALSE FALSE 1522.180168 1266.967114 1566.653874 1231.45601 1050.161833 1151.01935 1641.9797 1450.214417 1290.51731 1311.35334 1.160770421 0.966152353 1.194684778 0.939072615 0.800822937 0.877733953 1.252126067 1.105891428 0.984111049 1 10.35684075 -6.22481816 24.99353045 1.075966668 0.992090228 0.051222658 0.134385272 1292.477322 882100.3082 0.021516514 0.035680613 5.96E-07 6.22481816 -0.08387644 PVSSAASVYAGAGGS(ph)GSR ddPTM_HeLa_CUDC101_4h_R1 2 PVSSAASVYAGAGGSGSR 18 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 PVSSAASVYAGAGGS(0.885)GS(0.115)R;PVSSAASVYAGAGGS(0.939)GS(0.061)R ; 188.9 1.92E-11 397680000 5628.8 4795.4 4349.2 4500.7 4707.7 4124 3818.4 4541.3 4085.2 4912.1 TRUE FALSE FALSE 4969.000597 4943.14059 4584.330908 4684.258 4360.42235 4045.341571 3965.676967 5058.263235 3916.806327 4882.882611 1.01763671 1.012340657 0.938857489 0.959322264 0.893001675 0.828474058 0.812158981 1.035917436 0.802150418 1 12.25351738 -6.224603711 1.332695437 1.008611658 0.883126185 0 0.087812219 0.265568356 0.927187059 0.0092812 0.018121756 5.96E-07 6.224603711 -0.125485473 NADNDWFR ddPTM_HeLa_CUDC101_4h_R1 2 NADNDWFR 8 0 Q9Y3C8 Q9Y3C8 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 0 0 ; ; 119.21 0.0015045 0 8156.5 7739.8 7054.8 6744.9 8040.1 7436.8 6769.5 7411.8 7833.6 8684.4 FALSE FALSE TRUE 7200.407434 7978.254064 7436.203828 7019.986176 7446.997841 7294.955431 7030.601883 8255.529352 7510.695692 8632.744803 0.834080886 0.924185094 0.861395072 0.813181246 0.862645429 0.845033138 0.814410948 0.956304112 0.870024061 1 13.07560363 -9.37858932 0.79302733 1.013116013 0.858982875 0.010669271 0.058831135 0.425405825 0.410859475 0.043518241 0.008077532 4.18E-10 9.37858932 -0.154133137 GWDS(ph)SHEDDLPVYLAR ddPTM_HeLa_CUDC101_4h_R1 4 GWDSSHEDDLPVYLAR 16 0 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 GWDS(0.5)S(0.5)HEDDLPVYLAR;GWDS(0.5)S(0.5)HEDDLPVYLAR;GWDS(0.5)S(0.5)HEDDLPVYLAR;GWDS(0.5)S(0.5)HEDDLPVYLAR ;;; 101.28 0.0025182 36674500 18851.1 14366.7 13353.2 12436.2 11257.5 11073.2 10354.1 7766.2 14861.3 16793.6 TRUE FALSE FALSE 16641.40263 14809.321 14075.11438 12943.40199 10427.05665 10861.99716 10753.46111 8650.272816 14248.71092 16693.71092 0.996866587 0.88711977 0.84313874 0.775346 0.624609873 0.650664026 0.644162413 0.518175549 0.853537658 1 14.02701707 -6.224555367 0.756210836 1.004848324 0.576154697 0.855146401 0.059474856 0.083597877 0.093325881 0.006856087 0.017160115 5.96E-07 6.224555367 -0.428693627 YETPSDAIEVIS(ph)PASS(ph)PAPPQEK ddPTM_HeLa_CUDC101_4h_R1 2 YETPSDAIEVISPASSPAPPQEK 23 0 A0A088AWL3;O75376;O75376-2;E7EVK1 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 2 0 YETPSDAIEVIS(0.988)PAS(0.27)S(0.742)PAPPQEK;YETPSDAIEVIS(0.994)PAS(0.085)S(0.921)PAPPQEK ; 94.837 0.00045888 20024300 10008.4 9393.9 8843.8 8279.5 8997.7 8507.8 8197.1 7536.2 9930.3 10047 TRUE FALSE FALSE 8835.230524 9683.314924 9321.922579 8617.173797 8333.957597 8345.52789 8513.264893 8394.090546 9520.968831 9987.239997 0.884651868 0.969568662 0.933383255 0.862818336 0.834460532 0.835619039 0.85241417 0.840481509 0.953313311 1 13.28587032 -6.224332645 3.022230527 0.946122453 0.841706331 0.782008675 0.027444144 0.147152239 2.703326078 0.00668077 0.011287503 5.97E-07 6.224332645 -0.104416122 IEEVLSPEGSPSKS(ph)PSKK ddPTM_HeLa_CUDC101_4h_R1 1 IEEVLSPEGSPSKSPSKK 18 2 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 IEEVLSPEGS(0.002)PS(0.199)KS(0.748)PS(0.051)KK 96.633 0.0026032 43411000 2689.7 1998.4 2321 1680.5 1686.3 1911.2 2093.3 1507.4 2202.6 1876.3 TRUE FALSE FALSE 2374.417443 2059.968335 2446.480281 1749.038054 1561.905009 1874.747044 2174.039282 1678.996323 2111.807896 1865.139684 1.273050734 1.104457941 1.311687431 0.937751777 0.837419858 1.005151014 1.165617407 0.900198702 1.13225187 1 10.86506797 -6.22431431 24.97169064 1.142450199 0.97481134 0.414676039 0.114316043 607.3391232 408518.6659 0.020759552 0.034425202 5.97E-07 6.22431431 -0.167638859 IHRAS(ph)DPGLPAEEPKEK ddPTM_HeLa_CUDC101_4h_R1 3 IHRASDPGLPAEEPKEK 17 2 P27708;F8VPD4 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 IHRAS(1)DPGLPAEEPKEK;IHRAS(1)DPGLPAEEPKEK;IHRAS(1)DPGLPAEEPKEK ;; 93.776 0.0021403 736490000 23321.6 21393.2 22085.5 23586.7 27930 26199.4 26798.1 25087.7 19337.9 17930.6 TRUE FALSE FALSE 20587.8774 22052.29913 23279.50893 24548.66758 25869.65954 25699.6901 27831.71169 27943.58236 18540.78358 17823.94799 1.155068305 1.237228651 1.306080389 1.377285638 1.451398958 1.441862942 1.561478507 1.567754931 1.040217554 1 14.12152931 -6.223977555 0.319004002 0.984981111 1.691469608 0.98596399 0.022777716 0.159879845 0.031683406 0.013842837 0.041785133 5.97E-07 6.223977555 0.706488496 NAEEESESEAEEGD ddPTM_HeLa_CUDC101_4h_R1 2 NAEEESESEAEEGD 14 0 H0Y503;Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3 H0Y503 BZW1 Basic leucine zipper and W2 domain-containing protein 1 0 0 ; ; 187.16 2.42E-10 26101000 10970.2 11228.2 10699.4 10077.3 10524.8 8429.3 7027.2 6020.2 12811.5 12539.3 FALSE FALSE TRUE 9684.289786 11574.12753 11277.84193 10488.29585 9748.406472 8268.525147 7298.241458 6705.515234 12283.40455 12464.71569 0.776936276 0.928551266 0.904781321 0.841438836 0.782080131 0.663354492 0.585512068 0.537959742 0.985454049 1 13.60556236 -3.642178465 0.338292095 0.925856079 2.52E-20 0.853984396 0.058926612 3.771443395 0.221873613 0.027768091 1.551749592 0.000227941 3.642178465 -0.925856079 NAEK(ac)ELTDR ddPTM_HeLa_CUDC101_4h_R1 2 NAEKELTDR 9 1 Q9UKX7;F2Z3L9;X6RKQ2;B1AHA5;B0QY21 Q9UKX7 NUP50 Nuclear pore complex protein Nup50 0 1 ; NAEK(1)ELTDR;NAEK(1)ELTDR 107.83 0.0050232 2183200 2160.23 2040.1 1852.97 1701.5 1607.39 1538.56 1426.73 1591.45 2193 2773.3 FALSE TRUE FALSE 1907.011114 2102.953063 1953.147163 1770.894525 1488.816042 1509.214531 1481.759454 1772.614235 2102.603612 2756.804288 0.691747007 0.762822763 0.708482344 0.642372232 0.54005141 0.547450734 0.537491711 0.642996038 0.762696003 1 11.42878114 -11.46824526 0.153077046 1.739629391 0.469645429 0.544705198 0.089812385 7.487502691 0.141722103 1.940279278 0.142151968 3.40E-12 11.46824526 -1.269983962 NAEK(ac)YAEEDR ddPTM_HeLa_CUDC101_4h_R1 1 NAEKYAEEDR 10 1 P38646;H0Y8S0 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 1 NAEK(1)YAEEDR 85.924 0.032595 2011500 984.23 862.27 694.45 757.47 800.77 742.26 581.73 654.65 945.64 734.95 FALSE TRUE FALSE 868.8600514 888.8355167 731.9940676 788.3629007 741.6987925 728.1026272 604.167521 729.1727098 906.6603189 730.5784847 1.189276812 1.216618796 1.001937619 1.079094057 1.015221236 0.9966111 0.826971412 0.998075806 1.241016999 1 9.512895457 -5.407158659 1.307984635 1.09655378 0.913454899 0.451739318 0.089278724 0.380675908 1.219861396 0.0145165 0.052261982 3.92E-06 5.407158659 -0.183098882 NAEQYK(ac)DQADK ddPTM_HeLa_CUDC101_4h_R1 2 NAEQYKDQADK 11 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 1 ; NAEQYK(1)DQADK;NAEQYK(1)DQADK 205.46 1.32E-09 5422800 4613.3 1279.81 1982.74 1517.07 4884.5 3920.8 4866.2 2235.2 3877.4 3033.9 FALSE TRUE FALSE 4072.535967 1319.239429 2089.932922 1578.942672 4524.180166 3846.017272 5053.890964 2489.646133 3717.571931 3015.854228 1.350375602 0.437434746 0.692982075 0.523547411 1.500132243 1.275266303 1.675774286 0.825519387 1.232676267 1 11.55835098 NAEQYKDQADK ddPTM_HeLa_CUDC101_4h_R1 2 NAEQYKDQADK 11 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 150.09 0.00083128 36899000 8028.8 6382.2 8691.5 8116.8 8332.6 7332.7 7194.9 6485.2 7468.2 8746.5 FALSE FALSE TRUE 7087.676235 6578.828017 9161.38878 8447.838188 7717.920699 7192.840965 7472.409703 7223.448954 7160.357635 8694.475429 0.815193084 0.756667619 1.053702303 0.971632878 0.887681006 0.827288664 0.859443421 0.830809059 0.823552576 1 13.08588327 -9.491761171 1.260833199 0.999400237 0.871907404 0 0.096176498 0.534005502 1.530415767 0.057752737 0.014346964 3.22E-10 9.491761171 -0.127492832 NAFACFDEEASGFIHEDHLR ddPTM_HeLa_CUDC101_4h_R1 3 NAFACFDEEASGFIHEDHLR 20 0 P24844 P24844 MYL9 Myosin regulatory light polypeptide 9 0 0 ;; ;; 171.25 5.61E-08 25804000 12784.5 11134.7 10782.9 9833.6 13630 11920.3 11778 11277 11020.4 9774.5 FALSE FALSE TRUE 11285.92029 11477.74691 11365.85619 10234.65671 12624.54205 11692.94014 12232.28141 12560.7281 10566.13445 9716.360839 1.161537789 1.18128043 1.169764728 1.053342592 1.299307659 1.203427943 1.25893651 1.292739978 1.087458013 1 13.24620035 -13.52287868 0.056346078 0.153295687 1.59069455 0.593847807 0.060569613 133.4558777 0.59242099 16.30454772 3.3861379 3.00E-14 13.52287868 1.437398863 NAFACFDEEATGTIQEDYLR ddPTM_HeLa_CUDC101_4h_R1 2 NAFACFDEEATGTIQEDYLR 20 0 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 0 ; ; 284.72 8.59E-104 15362900 4425 3862.3 3744.5 3442.4 4177.8 3896.5 3483.6 3946.7 3519.6 2969.6 FALSE FALSE TRUE 3906.308208 3981.292885 3946.938996 3582.795951 3869.612017 3822.180755 3617.963619 4395.976375 3374.520598 2951.936687 1.32330352 1.348705378 1.337067632 1.213710296 1.310872294 1.294804449 1.225623718 1.489183828 1.143154802 1 11.52744606 -9.17441049 0.724928488 0.978899105 1.314539041 0.559390493 0.083428539 0.314706648 0.271146416 0.063274739 0.014351426 6.69E-10 9.17441049 0.335639936 NAFMMLIHADQDR ddPTM_HeLa_CUDC101_4h_R1 1 NAFMMLIHADQDR 13 0 E9PP73;P53618 E9PP73 COPB1 Coatomer subunit beta 0 0 115.12 0.00019135 0 1465.6 1187.1 1231.9 1160.2 1187.6 1154.7 1149.1 1139.4 1153.9 1268.8 FALSE FALSE TRUE 1293.80459 1223.673144 1298.50024 1207.517971 1099.993114 1132.676021 1193.421172 1269.10469 1106.335754 1261.253121 1.025808831 0.970204254 1.029531835 0.957395427 0.872143026 0.89805607 0.946218607 1.006225213 0.877171866 1 10.30064212 -6.073015272 5.071454064 1.009601117 0.927756437 0.038501434 0.055112154 0.129499334 6.167056263 0.005509695 0.00934634 8.45E-07 6.073015272 -0.08184468 VPT(ph)ANVSVVDLTCR ddPTM_HeLa_CUDC101_4h_R1 2 VPTANVSVVDLTCR 14 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VPT(1)ANVSVVDLTCR;VPT(1)ANVSVVDLTCR ; 203.06 2.82E-16 138512000 595.44 559.57 656.99 301.39 240.46 496.16 337.01 573.22 368.09 465.51 TRUE FALSE FALSE 525.6434258 576.8096884 692.5088667 313.6819869 222.7217449 486.6965747 350.0085886 638.4730478 352.9171744 462.7411258 1.135934103 1.246506213 1.496536245 0.677877909 0.481309597 1.051768575 0.756380985 1.379762922 0.762666542 1 8.854061513 -6.222247456 24.99915517 1.111874011 0.851708873 0.171315889 0.282222759 699.9623096 446481.5192 0.039079677 0.064805682 5.99E-07 6.222247456 -0.260165137 NAK(ac)K(ac)K(ac)NNK ddPTM_HeLa_CUDC101_4h_R1 2 NAKKKNNK 8 3 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 3 ; NAK(1)K(1)K(1)NNK;NAK(1)K(1)K(1)NNK 101.43 0.0014219 0 0 0 186.11 0 59.224 229.55 140.89 0 160.49 0 FALSE TRUE FALSE 0 0 196.1716696 0 54.85516351 225.1717162 146.3241745 0 153.8745343 0 0 NVSTGS(ph)AENEEK ddPTM_HeLa_CUDC101_4h_R1 3 NVSTGSAENEEK 12 0 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 NVS(0.108)T(0.011)GS(0.882)AENEEK;NVSTGS(1)AENEEK;NVS(0.065)T(0.391)GS(0.543)AENEEK ;; 163.62 2.49E-11 68100000 7741.5 5679.7 5450.8 6052 5346.9 5685.9 4860 4997.6 5802.8 6072.1 TRUE FALSE FALSE 6834.053105 5854.684825 5745.486736 6298.826719 4952.46984 5577.450931 5047.451828 5566.506583 5563.606128 6035.982879 1.132218769 0.969963789 0.951872603 1.043546154 0.820491035 0.92403359 0.836226996 0.922220406 0.921739879 1 12.559373 -6.221442883 1.035426568 1.058382376 0.876641853 0.251090597 0.075823809 0.289606255 0.613669215 0.012519164 0.026919208 6.01E-07 6.221442883 -0.181740523 ESLPTSPPWTPGAS(ph)RPPSSLDGWVSPGPWEPGR ddPTM_HeLa_CUDC101_4h_R1 1 ESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGR 33 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 ESLPT(0.008)S(0.008)PPWT(0.154)PGAS(0.508)RPPS(0.088)S(0.088)LDGWVS(0.144)PGPWEPGR 49.087 0.010851 14646000 1198.2 1027.5 1320 923.6 950.89 1123.9 1010 946.15 1100.8 1324.9 TRUE FALSE FALSE 1057.748812 1059.156057 1391.363193 961.2684001 880.7447391 1102.46348 1048.956038 1053.855892 1055.424558 1317.019436 0.803138347 0.804206854 1.056448489 0.729881712 0.668740882 0.837089757 0.796462079 0.80018249 0.801373563 1 10.36306092 -6.221004123 24.99006642 0.905515122 0.766631285 0.325919426 0.090117233 485.2899695 299922.1547 0.015136911 0.025101494 6.01E-07 6.221004123 -0.138883837 NAMGSLASQATK(ac)DGK ddPTM_HeLa_CUDC101_4h_R1 1 NAMGSLASQATKDGK 15 1 Q5VWC4;H0Y3Y9;P55036;H0Y561 Q5VWC4 PSMD4 26S proteasome non-ATPase regulatory subunit 4 0 1 NAMGSLASQATK(1)DGK 191.06 7.50E-12 612520 63.701 0 0 0 71.118 0 61.202 67.202 0 134.85 FALSE TRUE FALSE 56.23406534 0 0 0 65.87176683 0 63.56258164 74.85200404 0 134.0479062 0.419507226 0 0 0 0.491404668 0 0.474178101 0.558397413 0 1 7.066604875 -8.48074883 0.823144658 0.948072568 0.222187039 0 0.368890482 0.271961425 0.381827531 0.097773441 0.050896509 3.31E-09 8.48074883 -0.725885529 (ac)AAAAAAAAAAGAAGGRGS(ph)GPGR ddPTM_HeLa_CUDC101_4h_R1 1 AAAAAAAAAAGAAGGRGSGPGR 22 1 Q86U42-2;Q86U42 Q86U42-2 PABPN1 Polyadenylate-binding protein 2 1 0 AAAAAAAAAAGAAGGRGS(1)GPGR 131.13 2.74E-26 17303000 278.72 243.89 152.12 168.7 188 173.27 46.164 146.79 240.9 280 TRUE FALSE FALSE 246.0488641 251.4039618 160.3440673 175.5803152 174.1316145 169.9651634 47.94456094 163.4999803 230.97 278.3345475 0.884004039 0.903243827 0.576083956 0.630824728 0.625619838 0.610650618 0.172255156 0.587422516 0.829828715 1 8.12067618 -6.220878963 0.467660995 0.987320399 0.356225123 0.640508863 0.13455409 0.42214853 0.172463815 0.03663718 0.112724356 6.01E-07 6.220878963 -0.631095276 NANCSLPSCQK(ac)MK ddPTM_HeLa_CUDC101_4h_R1 2 NANCSLPSCQKMK 13 1 Q92793;Q92793-2;A0A669KB12;Q09472 Q92793;A0A669KB12 CREBBP;EP300 CREB-binding protein;Histone acetyltransferase p300 0 1 ; NANCSLPSCQK(1)MK;NANCSLPSCQK(1)MK 247.29 8.07E-49 1917000 2739.3 2094.44 1506.7 2078.4 2249.04 1979.38 1832.6 1742.4 1769.15 360.87 FALSE TRUE FALSE 2418.203407 2158.967214 1588.15676 2163.166136 2083.1328 1941.626624 1903.283996 1940.747773 1696.224888 358.7235292 6.741134076 6.018471157 4.427244466 6.030176332 5.807070433 5.412599025 5.305712731 5.410149084 4.728501897 1 8.486728567 -9.341445922 0.969951591 0.887448916 5.687629801 0.296597293 1.259084848 0.147304763 0.238813953 0.508633862 0.121625182 4.56E-10 9.341445922 4.800180885 ASS(ph)FSGISVLTR ddPTM_HeLa_CUDC101_4h_R1 2 ASSFSGISVLTR 12 0 H7C1X4;H7BZ47;H7C207;Q15032-2;Q15032-4;Q15032;Q15032-3 H7C1X4 R3HDM1 R3H domain-containing protein 1 1 0 AS(0.042)S(0.955)FS(0.003)GISVLTR;AS(0.324)S(0.674)FS(0.002)GISVLTR ; 139.19 0.0012743 59514000 2768.21 2524.12 2275.72 2657.4 3046.3 2873 2564.1 2278.7 2573.4 2723.4 TRUE FALSE FALSE 2443.72462 2601.885145 2398.752307 2765.780258 2821.580518 2818.202312 2662.998196 2538.097997 2467.323363 2707.201096 0.902675691 0.961097847 0.886063585 1.021638275 1.042250065 1.041002206 0.983672103 0.937535819 0.911392717 1 11.40258634 -6.219916007 24.99011965 0.948880537 1.008067776 0.394392033 0.042726843 547.5912772 329558.1388 0.007517353 0.012466074 6.03E-07 6.219916007 0.059187239 NAEAVLQS(ph)PGLSGK ddPTM_HeLa_CUDC101_4h_R1 2 NAEAVLQSPGLSGK 14 0 Q13045-2;Q13045-3;Q13045 Q13045-2 FLII Protein flightless-1 homolog 1 0 NAEAVLQS(1)PGLSGK;NAEAVLQS(0.995)PGLS(0.005)GK ; 178.22 1.21E-07 391370000 16935.6 13557.6 13398.5 12960.3 13971.9 13337.6 12960 12822.5 14270.2 13338.6 TRUE FALSE FALSE 14950.43464 13975.29359 14122.86344 13488.87705 12941.22077 13083.2075 13459.87154 14282.16157 13681.97632 13259.26141 1.127546563 1.054002418 1.065131986 1.017317378 0.976013699 0.986722193 1.015129812 1.077146089 1.031880728 1 13.69471279 -6.219813033 5.333363402 1.06155675 1.010390214 0.20776756 0.03916577 0.281248716 20.48023127 0.00807152 0.013363393 6.03E-07 6.219813033 -0.051166536 SGRSPT(ph)GNTPPVIDSVSEK ddPTM_HeLa_CUDC101_4h_R1 1 SGRSPTGNTPPVIDSVSEK 19 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.002)GRS(0.217)PT(0.78)GNT(0.001)PPVIDSVSEK 164.01 0.00015542 15208000 1406 1881.1 1616.7 1907.6 2611.7 2066 2052.8 2126.7 1918.1 1957.2 TRUE FALSE FALSE 1241.190811 1939.054461 1704.103692 1985.400173 2419.040094 2026.594492 2131.977184 2368.794932 1839.035106 1945.558487 0.637961192 0.996656988 0.875894353 1.020478277 1.243365394 1.041651796 1.095817575 1.217539821 0.945247916 1 10.92596864 -6.219274728 1.816949305 0.837167887 1.139981003 0.498979404 0.115619355 0.240069871 1.546420641 0.024105427 0.043667087 6.04E-07 6.219274728 0.302813116 NARCTSISWELR ddPTM_HeLa_CUDC101_4h_R1 1 NARCTSISWELR 12 1 H7C2Y2;A0A1W2PPQ7;A0A1W2PPR6;A0A1W2PPS0;A0A1W2PPC3;A0A1W2PP57;A0A1W2PP53;A0A1W2PQ29;A0A1W2PRZ8;A0A1W2PR92;A0A1W2PP13;A0A1W2PRV7;A0A1W2PQN1;A0A1W2PQ52;A0A1W2PRH2;A0A1W2PPI8;A0A1W2PNP0;Q969N2-3;Q969N2-4;Q969N2-6;Q969N2-5;Q969N2 H7C2Y2 PIGT GPI transamidase component PIG-T 0 0 58.676 0.037542 2827700 1067.8 880.99 656.88 638.35 494.24 745.15 967.74 1116.5 654.27 354.42 FALSE FALSE TRUE 942.6341027 908.1322577 692.3929198 664.3846722 457.7808999 730.9375053 1005.066056 1243.597847 627.3007137 352.3118941 2.675567071 2.577637238 1.965283975 1.885785531 1.299362603 2.074688699 2.852773559 3.529820786 1.780526642 1 8.460709371 -9.364671635 1.015620834 0.976506271 2.333343501 0.245349279 0.62323765 0.466547967 0.837484724 0.468106306 0.113326425 4.32E-10 9.364671635 1.35683723 NLS(ph)PGAVESDVR ddPTM_HeLa_CUDC101_4h_R1 4 NLSPGAVESDVR 12 0 A0A3B3ISK1;A0A3B3ITV3;A0A3B3ISC6;A0A3B3IT15;A0A3B3IS84;P53621;P53621-2;A0A3B3IU78 A0A3B3ISK1 COPA Coatomer subunit alpha;Xenin;Proxenin 1 0 NLS(0.916)PGAVES(0.084)DVR;NLS(0.938)PGAVES(0.062)DVR;NLS(0.985)PGAVES(0.015)DVR;NLS(1)PGAVESDVR ;;; 177.39 3.04E-07 281982000 11974 10479.8 10719 9438.3 11230.8 10136.9 10012.9 8323.8 9731 10557.8 TRUE FALSE FALSE 10570.42587 10802.67022 11298.50156 9823.23467 10402.32626 9943.555522 10399.10091 9271.347746 9329.884061 10495.00174 1.007186672 1.029315715 1.076560238 0.935991715 0.991169561 0.947456301 0.990862238 0.883406023 0.888983565 1 13.35741478 -6.219103635 24.99948039 1.010825114 0.954230305 0.172124218 0.052668605 384.4626573 227027.1765 0.005177278 0.00858548 6.04E-07 6.219103635 -0.056594809 QEEGADAS(ph)EEDPTPAGEEDVKDAR ddPTM_HeLa_CUDC101_4h_R1 1 QEEGADASEEDPTPAGEEDVKDAR 24 1 Q86X53;E5RHA3;H0YB25 Q86X53 ERICH1 Glutamate-rich protein 1 1 0 QEEGADAS(0.998)EEDPT(0.002)PAGEEDVKDAR 83.747 4.20E-05 18876000 2937.5 2454.5 2306.6 2132.3 2083.9 2328 2243.5 1790.6 2663.4 2323.9 TRUE FALSE FALSE 2593.170703 2530.120236 2431.301773 2219.264411 1930.174849 2283.597279 2330.032547 1994.434666 2553.613525 2310.077339 1.122547137 1.095253476 1.052476353 0.96068836 0.835545553 0.988537154 1.008638329 0.863362725 1.10542339 1 11.17372544 -6.21910042 4.025314726 1.062712897 0.931318757 0.605108663 0.058044877 0.152268242 5.37355516 0.010122194 0.016859696 6.04E-07 6.21910042 -0.13139414 VSMPDVELNLKS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 VSMPDVELNLKSPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VSMPDVELNLKS(1)PK;VSMPDVELNLKS(1)PK;VSMPDVELNLKS(1)PK ;; 123.72 0.0061878 243205000 9611.7 7580.2 6645.7 6428.5 7197.8 5992 5782.9 5612.4 7221.4 7185.1 TRUE FALSE FALSE 8485.031096 7813.736977 7004.986644 6690.682016 6666.832634 5877.712583 6005.94839 6251.29293 6923.730835 7142.362706 1.187986587 1.093998905 0.98076602 0.936760326 0.933421181 0.822936726 0.840890982 0.875241595 0.969389419 1 12.80218568 -6.219058425 1.333948439 1.090868022 0.856841002 0.641659095 0.063714058 0.195893903 0.685216113 0.012760611 0.02498165 6.04E-07 6.219058425 -0.23402702 AATAARPPAPPPAPQPPSPT(ph)PSPPRPTLAR ddPTM_HeLa_CUDC101_4h_R1 1 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36-3;Q96B36;H9KV91 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 1 0 AATAARPPAPPPAPQPPS(0.031)PT(0.328)PS(0.328)PPRPT(0.313)LAR 69.142 5.09E-05 102280000 481.2 492.29 376.01 357.83 377.87 354.86 272.53 386.33 560.11 408.92 TRUE FALSE FALSE 424.7944655 507.4568714 396.338238 372.4238541 349.9952829 348.0916367 283.0415734 430.3082456 537.0220287 406.4877257 1.04503639 1.248394083 0.975031257 0.916199508 0.861023005 0.856339847 0.696310259 1.058600835 1.321127293 1 8.667067979 -6.218843598 2.691038583 1.040636739 0.858423608 0.378807975 0.138783485 0.216807793 3.102554704 0.01613289 0.027613185 6.04E-07 6.218843598 -0.182213131 NLGS(ph)INTELQDVQR ddPTM_HeLa_CUDC101_4h_R1 1 NLGSINTELQDVQR 14 0 A0A087X1A9;O75396 A0A087X1A9 SEC22B Vesicle-trafficking protein SEC22b 1 0 NLGS(1)INTELQDVQR 137.17 0.00061365 3344200 891.3 600.62 579.39 827.71 864.17 902.31 688.84 833.88 778.28 718.52 TRUE FALSE FALSE 786.8231651 619.1243903 610.713576 861.4675915 800.4219008 885.0999401 715.4087895 928.8055285 746.198969 714.2462111 1.101613355 0.866822086 0.855046294 1.206121332 1.120652638 1.23920845 1.0016277 1.300399658 1.044736335 1 9.480277668 -6.218000078 24.99959628 1.01957873 1.16475103 0.442037079 0.106000622 458.5806799 263916.1034 0.016457247 0.027291156 6.05E-07 6.218000078 0.1451723 NASCYFDIEWR ddPTM_HeLa_CUDC101_4h_R1 2 NASCYFDIEWR 11 0 Q16658;C9JPH9;C9JFC0;A0A0A0MSB2 Q16658 FSCN1 Fascin 0 0 ; ; 158.56 0.00082563 61460000 2211.85 2075.85 1555.71 1825.61 2508 2367.9 1846.41 1466.3 2051.74 1633.53 FALSE FALSE TRUE 1952.580296 2139.804478 1639.816388 1900.066267 2322.989837 2322.736253 1917.626652 1633.217665 1967.166409 1623.813691 1.202465718 1.317764772 1.009855008 1.170125783 1.43057658 1.430420414 1.180940069 1.005791289 1.211448345 1 10.6651704 -9.088677007 0.485571221 0.957462257 1.237029113 0 0.153776753 1.640023008 0.5787769 0.218809169 0.041662838 8.15E-10 9.088677007 0.279566856 KECSEAMEVETSVISIDS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 2 KECSEAMEVETSVISIDSPQK 21 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KECSEAMEVETS(0.002)VIS(0.291)IDS(0.707)PQK;KECSEAMEVETSVIS(0.278)IDS(0.722)PQK ; 169.8 1.42E-09 32894000 13395.8 10166.6 10300.1 9580.6 11464.2 10058.5 9950 8902 12726 9093.4 TRUE FALSE FALSE 11825.56463 10479.8209 10856.95456 9971.338279 10618.50881 9866.650871 10333.77483 9915.367697 12201.42889 9039.312052 1.308237238 1.159360451 1.201081952 1.103108093 1.174703201 1.091526746 1.143203683 1.096916186 1.349818307 1 13.14199726 -6.217059579 24.80690672 1.154294554 1.12432264 0.046072586 0.096499152 2097.797029 1172599.591 0.01756094 0.029121401 6.07E-07 6.217059579 -0.029971914 HFKDEDEDEDVAS(ph)PDGLGR ddPTM_HeLa_CUDC101_4h_R1 2 HFKDEDEDEDVASPDGLGR 19 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 HFKDEDEDEDVAS(1)PDGLGR;HFKDEDEDEDVAS(1)PDGLGR ; 146.34 2.26E-05 103939000 6010.1 5322.2 4894.1 5000.3 5021.7 5267.3 4976.4 4038.1 5472 5464.1 TRUE FALSE FALSE 5305.605189 5486.170674 5158.68985 5204.233847 4651.259196 5166.835028 5168.341415 4497.780981 5246.441844 5431.59929 0.976803498 1.010047019 0.949755233 0.95814024 0.856333273 0.951254824 0.951532162 0.82807673 0.965911063 1 12.40716134 -6.216817051 1.792649013 0.989893483 0.905258632 0.486547674 0.039582367 0.210539958 1.320409694 0.00586345 0.010661514 6.07E-07 6.216817051 -0.084634851 S(ph)PDGPVLSK ddPTM_HeLa_CUDC101_4h_R1 1 SPDGPVLSK 9 0 Q96AY4 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 S(1)PDGPVLSK 119.34 0.0058584 39766000 5446.5 3902.4 4143.7 3614.2 4000.9 3858.5 3951.3 2790.1 4156.4 3735.8 TRUE FALSE FALSE 4808.069526 4022.628319 4367.720956 3761.602698 3705.761578 3784.905541 4103.702965 3107.713706 3985.071433 3713.579295 1.294726501 1.083221334 1.176148564 1.012931837 0.99789483 1.019206873 1.105053276 0.836851312 1.073107941 1 11.85859467 -6.216625255 7.45267117 1.140124867 1.001676869 0.314091575 0.095317997 0.31740648 46.36032837 0.018467974 0.030588804 6.07E-07 6.216625255 -0.138447998 LGS(ph)VDSFER ddPTM_HeLa_CUDC101_4h_R1 3 LGSVDSFER 9 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 0 LGS(0.911)VDS(0.089)FER;LGS(0.842)VDS(0.158)FER;LGS(0.885)VDS(0.115)FER ;; 128.88 0.0035592 271545600 5222.74 5327.7 5880.71 5683.06 6621.5 7107.2 6563.1 6109.1 5552.3 5451.5 TRUE FALSE FALSE 4610.538334 5491.840122 6198.638971 5914.839751 6133.045137 6971.642001 6816.240965 6804.53525 5323.431844 5419.074236 0.85079815 1.013427734 1.143855703 1.091485278 1.131751452 1.286500553 1.257823877 1.255663782 0.982350788 1 12.4038307 -6.215854325 0.882857702 0.930903227 1.261704337 0.797797914 0.060387201 0.201691057 0.309693698 0.014211082 0.033069588 6.08E-07 6.215854325 0.33080111 SGS(ph)LLQVEETEREEGLGAGR ddPTM_HeLa_CUDC101_4h_R1 3 SGSLLQVEETEREEGLGAGR 20 1 Q8WYL5-2;Q8WYL5-5;Q8WYL5-4;Q8WYL5 Q8WYL5-2 SSH1 Protein phosphatase Slingshot homolog 1 1 0 S(0.245)GS(0.755)LLQVEETEREEGLGAGR;S(0.197)GS(0.803)LLQVEETEREEGLGAGR;S(0.247)GS(0.75)LLQVEET(0.003)EREEGLGAGR ;; 66.041 0.0078475 16189200 2592.19 2536.33 2628.45 2420.89 3048.58 2914.03 2636.41 2835.4 2668.33 2343.58 TRUE FALSE FALSE 2288.337418 2614.471321 2770.551958 2519.624358 2823.692327 2858.449733 2738.097217 3158.170475 2558.340308 2329.640282 0.982270712 1.122263957 1.189261698 1.08155082 1.212072245 1.22699189 1.175330474 1.355647264 1.098169674 1 11.18589149 -6.213745805 0.50603559 0.981609648 1.287747563 0.60058207 0.06709579 0.367386214 0.17600637 0.016086826 0.048820184 6.11E-07 6.213745805 0.306137915 RAELPGS(ph)SSPLLAQPR ddPTM_HeLa_CUDC101_4h_R1 1 RAELPGSSSPLLAQPR 16 1 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 0 RAELPGS(0.798)S(0.167)S(0.035)PLLAQPR 161.24 0.00011141 13048000 1378.1 1432.6 1442.3 1132.7 1453.2 1399.8 1434.6 965.4 1538.4 1436.1 TRUE FALSE FALSE 1216.561207 1476.736708 1520.275101 1178.896402 1346.000331 1373.101147 1489.933003 1075.297234 1474.986501 1427.558013 0.852197386 1.034449524 1.064948035 0.825813306 0.942869094 0.961853133 1.043693488 0.753242407 1.03322351 1 10.47933366 -6.213633464 24.99907932 0.947095646 0.918379528 0.074710363 0.097352209 1819.850153 951652.2221 0.015131241 0.025092305 6.11E-07 6.213633464 -0.028716118 EIDCLS(ph)PEAQK ddPTM_HeLa_CUDC101_4h_R1 2 EIDCLSPEAQK 11 0 Q32MZ4-3;Q32MZ4-2;Q32MZ4;C9JTC6 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 EIDCLS(1)PEAQK;EIDCLS(1)PEAQK ; 192.65 8.11E-12 186483000 9867.7 9634.5 9894.6 9317.3 9984.5 9285.4 7598.8 4138.5 10273.2 9343.4 TRUE FALSE FALSE 8711.023164 9931.327525 10429.53201 9697.299767 9247.963327 9108.296466 7891.888261 4609.610112 9849.734348 9287.825041 0.937896992 1.069284518 1.122925115 1.044087257 0.995708176 0.980670547 0.849702511 0.496306734 1.060499558 1 13.18112508 -4.237313179 1.867608625 0.996528612 0.31608831 0.890898887 0.055902739 0.242006314 0.81417335 0.009128132 0.29184567 5.79E-05 4.237313179 -0.680440302 down TLS(ph)ESFSR ddPTM_HeLa_CUDC101_4h_R1 1 TLSESFSR 8 0 O94921 O94921 CDK14 Cyclin-dependent kinase 14 1 0 T(0.01)LS(0.966)ES(0.024)FSR 86.882 0.033446 12120000 1850.2 1867.2 1446.6 1850.1 2813.2 2207.1 2286.5 2152.2 2096.9 1381.3 TRUE FALSE FALSE 1633.322361 1924.726219 1524.807572 1925.555075 2605.675841 2165.003245 2374.691071 2397.197749 2010.464894 1373.083966 1.189528391 1.401754202 1.110498418 1.402357847 1.897681354 1.576744976 1.729458015 1.745849349 1.464196614 1 10.42320414 -6.213302181 0.500488455 1.042870699 1.832602146 0.516827769 0.193194383 0.361567727 0.169286563 0.040553761 0.123539277 6.12E-07 6.213302181 0.789731447 NAVEEYVYDFR ddPTM_HeLa_CUDC101_4h_R1 2 NAVEEYVYDFR 11 0 O95757;E9PDE8 O95757 HSPA4L Heat shock 70 kDa protein 4L 0 0 ; ; 208.56 1.21E-22 29487000 3807.6 3529.5 2944.2 2999.3 3114.7 3297 3073.2 3170.8 3150.2 3494.9 FALSE FALSE TRUE 3361.2789 3638.239712 3103.372358 3121.624418 2884.934786 3234.115218 3191.734353 3531.751055 3020.347423 3474.112179 0.967521694 1.047243015 0.893285017 0.898538751 0.83040922 0.930918477 0.918719428 1.016590966 0.869386844 1 11.76242862 -6.741393255 24.99846372 0.988927994 0.9110896 0.144961954 0.060693778 189.7515333 236628.6187 0.007475978 0.010564966 1.81E-07 6.741393255 -0.077838395 NAVEEYVYEFR ddPTM_HeLa_CUDC101_4h_R1 2 NAVEEYVYEFR 11 0 Q92598-2;Q92598-3;Q92598;Q92598-4;A0A0A0MSM0 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 0 ; ; 167.11 0.00010568 44283000 4045.1 3810.4 3378.3 3754.8 3996.3 4060.9 3488.6 3392.5 4189.9 3645.7 FALSE FALSE TRUE 3570.93951 3927.793908 3560.941117 3907.936974 3701.500911 3983.445098 3623.156471 3778.688487 4017.190549 3624.015214 0.985354448 1.083823791 0.982595521 1.078344527 1.021381173 1.099180015 0.999763041 1.042680084 1.108491635 1 11.8233733 -7.290436751 24.85655897 0.993084042 1.042483417 0 0.050490569 529.5384371 453919.4917 0.005337484 0.006104073 5.12E-08 7.290436751 0.049399375 NAVEEYVYEMR ddPTM_HeLa_CUDC101_4h_R1 1 NAVEEYVYEMR 11 0 A0A087WYC1;P34932 A0A087WYC1 HSPA4 Heat shock 70 kDa protein 4 0 0 165.63 0.00023055 9673400 1331.2 1121.2 1055.3 1144 1402.4 1156.6 1222.6 1216.7 1605.1 1424.8 FALSE FALSE TRUE 1175.158754 1155.742843 1112.35271 1190.657265 1298.947746 1134.539782 1269.756092 1355.20421 1538.937099 1416.325226 0.829723804 0.816015151 0.785379438 0.840666566 0.917125334 0.801044676 0.896514493 0.956845352 1.086570422 1 10.46793687 -9.240000471 0.96529704 1.000294306 0.852386565 0.589932101 0.059487302 0.353204931 0.588990661 0.035976378 0.009844965 5.75E-10 9.240000471 -0.14790774 NAVIVALSSK ddPTM_HeLa_CUDC101_4h_R1 1 NAVIVALSSK 10 0 P61086;P61086-2 P61086 UBE2K Ubiquitin-conjugating enzyme E2 K 0 0 125.48 0.02569 370310 344.05 138.14 0 225.14 269.55 147.36 247.98 180.32 244.63 206.83 FALSE FALSE TRUE 303.7209805 142.3959297 0 234.3221823 249.6658335 144.5493535 257.5446717 200.8468999 234.5462479 205.599766 1.477243805 0.692587995 0 1.139700628 1.214329366 0.703061858 1.252650607 0.976882921 1.140790442 1 7.683694812 -7.252898407 24.9118939 1.225365131 0.855668563 0.167644803 0.358474197 820.9980328 2394647.951 0.065062222 0.078993831 5.59E-08 7.252898407 -0.369696569 S(ph)PTGNTPPVIDSVSEK ddPTM_HeLa_CUDC101_4h_R1 4 SPTGNTPPVIDSVSEK 16 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.845)PT(0.155)GNTPPVIDSVSEK;S(0.977)PT(0.02)GNT(0.003)PPVIDSVSEK;S(0.965)PT(0.035)GNTPPVIDSVSEK;S(0.953)PT(0.046)GNT(0.002)PPVIDSVSEK ;;; 180.56 1.67E-08 48414800 7762.2 6807.6 6253.8 5994.86 6113.9 6451.1 5976.2 5484.78 6178.3 6444 TRUE FALSE FALSE 6852.326683 7017.334087 6591.899345 6239.356303 5662.889778 6328.056016 6206.704036 6109.145185 5923.627859 6405.670801 1.069728198 1.09548778 1.02907245 0.974036365 0.88404321 0.987883426 0.968938965 0.953708889 0.924747469 1 12.64513394 -6.213228675 3.903570805 1.039419414 0.950893347 0.313263074 0.050134608 0.142997522 4.599403268 0.00626565 0.01047426 6.12E-07 6.213228675 -0.088526067 RNS(ph)FTPLSSSNTIR ddPTM_HeLa_CUDC101_4h_R1 3 RNSFTPLSSSNTIR 14 1 O60825 O60825 PFKFB2 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 1 0 RNS(0.99)FT(0.01)PLSSSNTIR;RNS(0.999)FT(0.001)PLSSSNTIR;RNS(0.999)FT(0.001)PLSSSNTIR ;; 137.27 0.0012487 154025000 4508.7 3259.91 3031.98 4103.1 4256.26 4449.53 4263 3122.76 3688.39 3628.55 TRUE FALSE FALSE 3980.197021 3360.343963 3195.89801 4270.442153 3942.284179 4364.662629 4427.425338 3478.242376 3536.353003 3606.967223 1.103474685 0.931625866 0.886034669 1.1839426 1.092963683 1.2100644 1.22746481 0.964312166 0.980422827 1 11.8165706 -6.213073328 24.99980373 1.028344217 1.142596452 0.361052137 0.092770522 426.4710821 220437.5243 0.014356894 0.023808167 6.12E-07 6.213073328 0.114252235 HRPS(ph)EADEEELAR ddPTM_HeLa_CUDC101_4h_R1 1 HRPSEADEEELAR 13 1 O14617;O14617-5;A0A2R8Y611;O14617-3;O14617-4;O14617-2 O14617 AP3D1 AP-3 complex subunit delta-1 1 0 HRPS(1)EADEEELAR 77.051 0.021007 10668000 823.7 857.42 929.55 908.61 1283.8 948.56 1171.8 924.3 1129.5 1010 TRUE FALSE FALSE 727.1471346 883.8360939 979.8042847 945.6670431 1189.096632 930.4677984 1216.996719 1029.518576 1082.941532 1003.992475 0.724255562 0.880321433 0.975907996 0.941906505 1.184368072 0.926767701 1.212157211 1.025424594 1.078635108 1 9.971532741 -6.212656568 1.601591153 0.868832135 1.083337962 0.197879162 0.121900588 0.306740972 1.538648424 0.020329037 0.0379596 6.13E-07 6.212656568 0.214505827 NCIVLIDSTPYR ddPTM_HeLa_CUDC101_4h_R1 2 NCIVLIDSTPYR 12 0 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 0 0 ; ; 131.83 0.00037212 288440 211.65 0 0 0 146.25 0 79.567 136.02 130.04 69.052 FALSE FALSE TRUE 186.8407078 0 0 0 135.4614289 0 82.63592584 151.503967 124.6796962 68.64127563 2.721987698 0 0 0 1.97346899 0 1.203880975 2.207184607 1.816395383 1 6.101004459 -7.256025936 24.99970066 1.813160856 0.743498237 0.242922803 0.869800261 540.9448523 2498126.103 0.165810724 0.199960474 5.55E-08 7.256025936 -1.06966262 NCK(ac)KPAEYGYVSLGR ddPTM_HeLa_CUDC101_4h_R1 1 NCKKPAEYGYVSLGR 15 2 P17676;P17676-2 P17676 CEBPB CCAAT/enhancer-binding protein beta 0 1 NCK(0.775)K(0.225)PAEYGYVSLGR 93.243 0.033326 1058600 546.54 538.24 479.31 473.85 372.63 481.17 483.75 303.4 384.75 353.64 FALSE TRUE FALSE 482.4754097 554.8225364 505.2229484 493.1756512 345.1418273 471.9924839 502.4083995 337.9378296 368.8904422 351.5365336 1.37247587 1.578278453 1.43718476 1.40291436 0.98180927 1.342655567 1.42917834 0.961316385 1.049365875 1 8.457530819 -9.21607172 1.034366163 1.006214417 1.322710997 0.273000968 0.186725183 0.513139374 1.013234445 0.113152425 0.034091318 6.08E-10 9.21607172 0.316496581 NCLALADDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 NCLALADDKK 10 1 O75367-2;O75367-3;O75367;B4DJC3 O75367-2 H2AFY Core histone macro-H2A.1;Histone H2A 0 1 ; NCLALADDK(1)K;NCLALADDK(1)K 143.5 0.00046498 2068780 2757.33 954.02 1083.31 723.67 2361.08 2236.38 2437.31 1807.29 1973.68 988.72 FALSE TRUE FALSE 2434.119957 983.4122254 1141.877015 753.1843906 2186.907832 2193.724778 2531.317863 2013.024588 1892.324075 982.8390495 2.47662113 1.000583184 1.161814863 0.766335435 2.225092535 2.232028508 2.575516169 2.048173187 1.925365171 1 9.940811369 -9.635966912 1.459425358 0.999983654 1.884443519 0 0.665354909 0.563689436 2.157365922 0.481913933 0.109527406 2.31E-10 9.635966912 0.884459864 VS(ph)PSPS(ph)QESLSSSK ddPTM_HeLa_CUDC101_4h_R1 1 VSPSPSQESLSSSK 14 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83;Q5JSH3-3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 2 0 VS(0.999)PS(0.005)PS(0.977)QES(0.018)LS(0.001)SSK 114.63 0.00079729 0 2519.8 1947.7 1739.3 2059.7 1900.8 1649.8 1122 1878.4 2375 2289.4 TRUE FALSE FALSE 2224.432864 2007.706328 1833.331819 2143.703469 1760.581771 1618.332814 1165.275916 2092.229463 2277.101495 2275.782547 0.977436472 0.882204818 0.805583038 0.941963226 0.773615991 0.711110478 0.512033066 0.919345069 1.000579558 1 11.152147 -6.210878576 0.621564412 0.996468198 0.685660607 0.487269299 0.105476143 0.441490964 0.32553751 0.022532512 0.063093104 6.15E-07 6.210878576 -0.310807591 LTTTGQVTS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 1 LTTTGQVTSPVK 12 0 P49916-4;P49916-2;P49916-3;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 LTTTGQVT(0.081)S(0.919)PVK 138.63 0.001292 151150000 7907 5754.3 5693.9 5497.1 5066.6 5390.4 4811 3682 6478.4 6617.1 TRUE FALSE FALSE 6980.153446 5931.583162 6001.729457 5721.295498 4692.847012 5287.587101 4996.561882 4101.143997 6211.35761 6577.741195 1.061177878 0.901765969 0.912430161 0.869796383 0.713443547 0.803860618 0.759616673 0.623488197 0.944299483 1 12.68337653 -6.209434911 0.791570499 1.029663882 0.705483724 0.786010992 0.058951224 0.168997818 0.207138408 0.010756218 0.026615867 6.17E-07 6.209434911 -0.324180158 AASEQQADTSGGDS(ph)PKV ddPTM_HeLa_CUDC101_4h_R1 4 AASEQQADTSGGDSPKV 17 1 U3KQ26 U3KQ26 FOXK1 1 0 AASEQQADTSGGDS(1)PKV;AASEQQADT(0.001)S(0.006)GGDS(0.993)PKV;AASEQQADT(0.001)SGGDS(0.999)PKV;AASEQQADTSGGDS(1)PKV ;;; 208.4 2.46E-23 69136000 11022.5 9799.2 9852.9 9193.2 9337.5 9258.4 8877.5 10067.6 10435.9 10887 TRUE FALSE FALSE 9730.459259 10101.10174 10385.57758 9568.138432 8648.691228 9081.811446 9219.908149 11213.65489 10005.72778 10822.24364 0.899116633 0.933364843 0.95965106 0.884117818 0.799158799 0.839180095 0.851940545 1.036167292 0.924552072 1 13.40171201 -6.20942296 5.641095022 0.949926594 0.872797335 0.180492515 0.063127206 0.248473614 18.31545258 0.010236156 0.017003156 6.17E-07 6.20942296 -0.077129259 SPVDIVTGGIS(ph)PVRDLDR ddPTM_HeLa_CUDC101_4h_R1 2 SPVDIVTGGISPVRDLDR 18 1 E9PEM5;A0A494C1L5;P50851-2;P50851;A0A494C0R9;H0YAC6;A0A494BZW2;H0Y9N9 E9PEM5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 SPVDIVTGGIS(1)PVRDLDR;SPVDIVT(0.011)GGIS(0.989)PVRDLDR ; 87.062 0.0035742 8980200 2745.6 2685.5 2178.39 2803.9 3358.4 3095.2 2308.23 2472.8 2502.8 2786.59 TRUE FALSE FALSE 2423.76493 2768.237072 2296.160353 2918.255161 3110.657523 3036.164217 2397.259204 2754.293557 2399.633525 2770.015239 0.875000576 0.999358066 0.828934195 1.053515923 1.122974877 1.096082135 0.865431775 0.994324334 0.866288925 1 11.4356782 -6.208607588 24.99726968 0.93714178 1.026748685 0.291924646 0.083827302 425.3077363 201233.445 0.013299445 0.022054624 6.19E-07 6.208607588 0.089606905 NCSETQYESK ddPTM_HeLa_CUDC101_4h_R1 2 NCSETQYESK 10 0 P61981 P61981 YWHAG "14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed" 0 0 ; ; 160.18 1.54E-06 12970000 2048.09 1417.94 2308.2 1863.15 2061.5 1846.6 2064 1930.9 2086.64 1091.28 FALSE FALSE TRUE 1808.015995 1461.625051 2432.988274 1939.13731 1909.427252 1811.379182 2143.609171 2150.705851 2000.627816 1084.789018 1.666698284 1.347381865 2.24282163 1.787570927 1.760183059 1.669798598 1.976060907 1.982602898 1.844255226 1 10.08319876 -9.338757599 0.292083063 0.581039908 1.942242952 0 0.335935217 1.73668831 0.192638372 0.820384503 0.129165053 4.58E-10 9.338757599 1.361203044 NCWQNYLDFHR ddPTM_HeLa_CUDC101_4h_R1 1 NCWQNYLDFHR 11 0 P14854;A0A494C160 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 0 0 142.07 0.0012042 12670000 3381.8 2451.4 1400.3 2758.2 2638.7 2689.6 2337.2 1616.9 1648.4 850.84 FALSE FALSE TRUE 2985.39053 2526.924728 1476.004454 2870.691318 2444.048358 2638.300361 2427.346587 1800.96136 1580.452254 845.7791658 3.529751797 2.987688549 1.745141656 3.394138132 2.889700358 3.119372607 2.869953157 2.129351766 1.868634649 1 9.724137213 -9.425239385 1.10701042 0.980287187 2.894295693 0.466836482 0.570167272 0.255961141 0.551810755 0.384423832 0.092766152 3.76E-10 9.425239385 1.914008505 S(ph)SPNPFVGS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 1 SSPNPFVGSPPK 12 0 P98082-3;P98082 P98082-3 DAB2 Disabled homolog 2 2 0 S(0.952)S(0.048)PNPFVGS(1)PPK 116.86 0.03878 4868800 1905.3 1841.3 1483.8 1505.7 1323.1 1337.7 1500.9 1082.1 1408.2 1814 TRUE FALSE FALSE 1681.963622 1898.028271 1564.018716 1567.108954 1225.497549 1312.185601 1558.790216 1205.28189 1350.1534 1803.210247 0.932760683 1.052582899 0.867352389 0.869066132 0.679619889 0.727694179 0.864452838 0.668408962 0.748749849 1 10.8163519 -6.208538396 1.865597362 0.972564618 0.746202159 0.409161521 0.096521194 0.13291801 0.902760657 0.010106806 0.018302491 6.19E-07 6.208538396 -0.226362459 QNGSNDSDRYS(ph)DNEEGK ddPTM_HeLa_CUDC101_4h_R1 1 QNGSNDSDRYSDNEEGK 17 1 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 QNGS(0.004)NDS(0.02)DRY(0.457)S(0.52)DNEEGK 76.614 0.0095656 55400000 3075.5 2075.1 2225.7 2576.7 2135.6 2281.3 2278 1698 2399.6 2586.1 TRUE FALSE FALSE 2714.994552 2139.031371 2346.028074 2681.788963 1978.061043 2237.788003 2365.863223 1891.293456 2300.687472 2570.717762 1.056123154 0.83207554 0.912596516 1.043206299 0.769458659 0.870491517 0.920312318 0.735706379 0.894959185 1 11.32795551 -6.207779314 0.544509063 1.027022485 0.812923808 0.167273686 0.093451714 0.681900479 0.379944041 0.021786888 0.06482905 6.20E-07 6.207779314 -0.214098677 NDDDEEEAAR ddPTM_HeLa_CUDC101_4h_R1 2 NDDDEEEAAR 10 0 E9PGZ1;Q05682-5;Q05682-4;C9J813;C9JEK3;C9JE79;F8WE61;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682 E9PGZ1;E7EX44;Q05682 CALD1 Caldesmon 0 0 ; ; 135.8 0.0093547 33149000 6678.1 4128.25 5996.6 5996.5 4339.7 4610.3 4944.6 3365.2 6871.3 8029.4 FALSE FALSE TRUE 5895.303241 4255.436489 6320.794335 6241.063189 4019.568977 4522.366209 5135.314878 3748.280765 6588.062106 7981.640772 0.738607939 0.533153096 0.791916664 0.781927346 0.50360184 0.566596059 0.64339088 0.469612812 0.825401981 1 12.96246963 -13.52287874 0.095489908 2.32310047 0.32039196 0.544039797 0.109035568 48.6123915 0.348815649 12.79762351 0.951762438 3.00E-14 13.52287874 -2.002708511 NDDDEEEAARER ddPTM_HeLa_CUDC101_4h_R1 2 NDDDEEEAARER 12 1 E9PGZ1;Q05682-5;Q05682-4;C9J813;C9JEK3;C9JE79;F8WE61;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682 E9PGZ1;E7EX44;Q05682 CALD1 Caldesmon 0 0 ; ; 145.14 0.0012499 31395000 5324.5 6712.4 6638 6638.3 9693.6 7585.2 7035.5 10293 7116.6 5227.5 FALSE FALSE TRUE 4700.370181 6919.201088 6996.870359 6909.038567 8978.52244 7440.524948 7306.861592 11464.71351 6823.250736 5196.406598 0.904542417 1.331535737 1.346482464 1.329580055 1.727832931 1.431859653 1.406137386 2.206277222 1.313070986 1 12.3432986 -1.463233147 0.221228207 0.876050871 5.829654781 0.556475236 0.229172846 15.48746321 0.222630434 0.154291139 26.54640615 0.034416512 1.463233147 4.95360391 NDEELNK(ac)LLGK ddPTM_HeLa_CUDC101_4h_R1 1 NDEELNKLLGK 11 1 A0A0U1RR32;A0A0U1RRH7;Q99878;Q96KK5;Q16777;Q6FI13;P20671;P0C0S8;Q9BTM1;Q9BTM1-2;H0YFX9 A0A0U1RR32 HIST1H2AJ;HIST1H2AH;HIST2H2AC;HIST2H2AA3;HIST1H2AD;HIST1H2AG;H2AFJ Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-D;Histone H2A type 1;Histone H2A.J;Histone H2A 0 1 NDEELNK(1)LLGK 193.3 8.65E-07 1029400 369.01 536.91 209.66 82.866 781.92 637.96 776.91 552.13 481.03 210.86 FALSE TRUE FALSE 325.7552072 553.4515607 220.9948538 86.24563366 724.2393194 625.7919759 806.8756789 614.9822474 461.2017398 209.6057953 1.554132636 2.640440164 1.054335609 0.411465883 3.455244728 2.985566191 3.849491268 2.933994484 2.200329142 1 7.711534796 -5.747462206 24.99961803 1.312247677 3.321996861 0.654868401 0.643929906 93.79489122 167760.8409 0.086960714 0.173225105 1.79E-06 5.747462206 2.009749184 NDEELNK(ac)LLGR ddPTM_HeLa_CUDC101_4h_R1 1 NDEELNKLLGR 11 1 Q93077;Q7L7L0;P04908 Q93077 HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E 0 1 NDEELNK(1)LLGR 129.84 0.0010137 709250 0 190.18 0 0 196.17 65.411 225.52 233.29 169.22 78.512 FALSE TRUE FALSE 0 196.0392204 0 0 181.6989299 64.16339416 234.2183819 259.8467906 162.24468 78.04500713 0 2.51187395 0 0 2.328130096 0.822133235 3.001068109 3.329447971 2.078860467 1 6.286234435 -4.512459211 0.835568122 0.620985534 4.539510192 0.350115482 0.990744925 0.986664854 0.631736249 0.139446447 3.268475493 3.07E-05 4.512459211 3.918524659 TSLDIEEYS(ph)DTEVQK ddPTM_HeLa_CUDC101_4h_R1 4 TSLDIEEYSDTEVQK 15 0 P51580 P51580 TPMT Thiopurine S-methyltransferase 1 0 TSLDIEEYS(0.775)DT(0.225)EVQK;T(0.001)SLDIEEYS(0.957)DT(0.043)EVQK;TSLDIEEYS(0.983)DT(0.017)EVQK;TSLDIEEYS(0.985)DT(0.015)EVQK ;;; 241.39 6.93E-44 129890000 13165.7 10170.3 10517.4 9833.6 11956.2 9528.4 9274.9 9423 11815.9 11366 TRUE FALSE FALSE 11622.4366 10483.63489 11086.00246 10234.65671 11074.21495 9346.661645 9632.636 10495.67623 11328.8436 11298.39453 1.028680365 0.927887132 0.981201571 0.905850534 0.98015828 0.827255733 0.852566794 0.928952889 1.002694991 1 13.46383016 -6.207609101 0.73497262 1.0130793 0.873034323 0.551162622 0.042567959 0.32502926 0.341152358 0.008450617 0.021782732 6.20E-07 6.207609101 -0.140044977 NDFTEEEEAQVR ddPTM_HeLa_CUDC101_4h_R1 1 NDFTEEEEAQVR 12 0 E5RJR5;P63208 E5RJR5 SKP1 S-phase kinase-associated protein 1 0 0 118.87 0.019782 17368000 934.93 730.01 704.6 651 865.92 846.24 635.3 503.1 920.36 763.91 FALSE FALSE TRUE 825.3389227 752.5007428 742.6928073 677.5505939 802.0428068 830.0993819 659.8037338 560.3708704 882.4223712 759.3662293 1.086878624 0.990958926 0.978042977 0.892258001 1.056200257 1.093147614 0.86888738 0.737945472 1.162051112 1 9.56865203 -4.548962575 3.851334072 1.026794194 0.756922766 0.641849261 0.071287505 0.088314131 2.76779408 0.008967499 0.045185915 2.83E-05 4.548962575 -0.269871428 NDFTEEEEAQVRK ddPTM_HeLa_CUDC101_4h_R1 2 NDFTEEEEAQVRK 13 1 E5RJR5;P63208 E5RJR5 SKP1 S-phase kinase-associated protein 1 0 0 ; ; 104.7 0.006814 9426500 2615.4 2738.2 2790.5 2744.8 2872.2 2439.4 2480.9 2661.8 2700.8 2313.6 FALSE FALSE TRUE 2308.826777 2822.560696 2941.362871 2856.744808 2660.323528 2392.872509 2576.589144 2964.808553 2589.471881 2299.838604 1.003908175 1.227286424 1.278943168 1.242150124 1.156743575 1.040452363 1.120334766 1.289137658 1.125936349 1 11.16731691 -7.269366514 24.29364593 1.001845519 1.188606471 0.390749472 0.081032344 211.844726 649221.8042 0.012897846 0.014894165 5.38E-08 7.269366514 0.186760952 SAS(ph)APTLAETEK ddPTM_HeLa_CUDC101_4h_R1 2 SASAPTLAETEK 12 0 Q86W92-2 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 SAS(0.96)APT(0.04)LAETEK;S(0.46)AS(0.538)APT(0.003)LAETEK ; 182.89 1.40E-10 43330000 4068.8 3102.3 3141.3 2858.5 2539.4 2754.1 2326.95 2050.49 3233.6 3691.3 TRUE FALSE FALSE 3591.861432 3197.878186 3311.12818 2975.081985 2352.073521 2701.570131 2416.701241 2283.909493 3100.309639 3669.343983 0.978883814 0.871512238 0.902376064 0.810793973 0.641006548 0.736254258 0.658619429 0.622429923 0.84492205 1 11.84130644 -6.207455637 0.736112363 0.995659107 0.636617407 0.775186726 0.061847205 0.114311935 0.120370473 0.007627836 0.01964834 6.20E-07 6.207455637 -0.3590417 NDHQEDFWK ddPTM_HeLa_CUDC101_4h_R1 2 NDHQEDFWK 9 0 Q9H4A4;A6NKB8 Q9H4A4 RNPEP Aminopeptidase B 0 0 ; ; 123.11 0.0045758 31773000 16545.3 13785.4 14323.5 15133 17220.9 15876 15325.7 13236.5 13739.4 14762.1 FALSE FALSE TRUE 14605.88502 14210.11183 15097.87174 15750.18915 15950.54852 15573.19175 15916.81738 14743.28966 13173.05612 14674.29437 0.99533815 0.968367642 1.028865263 1.073318331 1.086972096 1.0612566 1.084673442 1.004701779 0.897696051 1 13.84100351 -6.499547275 4.398753313 0.995508234 1.064167288 0.535598023 0.038644673 0.087834994 4.058839671 0.003410446 0.005118377 3.17E-07 6.499547275 0.068659055 AST(ph)PDWVSEGPQPGLR ddPTM_HeLa_CUDC101_4h_R1 2 ASTPDWVSEGPQPGLR 16 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 AS(0.339)T(0.661)PDWVSEGPQPGLR;AS(0.232)T(0.768)PDWVSEGPQPGLR ; 309.23 3.70E-143 286188000 4099.2 3533.1 3222.3 2750.6 2922.5 2676 2894.8 1751.94 3662.8 3663.8 TRUE FALSE FALSE 3618.69799 3641.950623 3396.507285 2862.781357 2706.912997 2624.959759 3006.453406 1951.373768 3511.817834 3642.007555 0.993599803 0.999984368 0.932592048 0.786044871 0.743247497 0.720745281 0.825493457 0.535796189 0.964253308 1 11.8305182 -6.206756488 1.489987012 0.998804297 0.708101641 0.790744099 0.067387236 0.114287698 0.497167682 0.009842498 0.018773189 6.21E-07 6.206756488 -0.290702656 PAS(ph)PVAGSPK ddPTM_HeLa_CUDC101_4h_R1 2 PASPVAGSPK 10 0 Q13057-2;K7EN91;Q13057 Q13057-2 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase 1 0 PAS(0.999)PVAGS(0.001)PK;PAS(1)PVAGSPK ; 130.44 0.0022794 79815000 9968.9 7223.8 7787.1 8575.1 5311.7 5605.6 6512.7 4806.5 7154.5 9967.5 TRUE FALSE FALSE 8800.360654 7446.356716 8208.094181 8924.829643 4919.866473 5498.68252 6763.897021 5353.652531 6859.588482 9908.212867 0.888188493 0.751533785 0.828413185 0.900750697 0.496544285 0.55496209 0.682655602 0.540324739 0.692313394 1 13.27440915 -6.206175383 0.386197164 0.992461524 0.495619391 0.353231031 0.130144288 0.628222924 0.174835213 0.03901518 0.123870952 6.22E-07 6.206175383 -0.496842133 RVAS(ph)SPAPPEGPSHPR ddPTM_HeLa_CUDC101_4h_R1 1 RVASSPAPPEGPSHPR 16 1 H7BYJ3;O14578;O14578-4;O14578-3 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 RVAS(0.5)S(0.5)PAPPEGPSHPR 57.366 0.035759 1310500 847.53 720.8 721.79 745.88 928.96 800.67 761.47 603.75 833.42 779.12 TRUE FALSE FALSE 748.1838182 743.0069936 760.8121507 776.3002104 860.4324715 785.3985538 790.840153 672.4784596 799.0660748 774.4857596 0.966039477 0.959355268 0.982344919 1.002342781 1.110972618 1.014090374 1.021116455 0.868290283 1.031737595 1 9.597094902 -6.205191025 5.313506284 0.981199747 1.011260637 0.002823991 0.058436995 0.52602662 32.42116966 0.008409103 0.013994131 6.23E-07 6.205191025 0.03006089 NDKSEEEQSSSSVK ddPTM_HeLa_CUDC101_4h_R1 1 NDKSEEEQSSSSVK 14 1 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2D6;G3V2Q1;P07910-4;B4DY08;G3V4W0;G3V5V7 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 0 113.65 0.0033468 7061900 2030.7 877.19 1906.1 2130.2 1384 1454.4 1652.7 935.18 1935.6 2223.6 FALSE FALSE TRUE 1792.664424 904.2151842 2009.149532 2217.078764 1281.905077 1426.659743 1716.445193 1041.637111 1855.813749 2210.373928 0.811023149 0.409077927 0.90896364 1.003033349 0.57994942 0.645438188 0.776540643 0.471249275 0.83959267 1 11.11007474 -13.52287867 0.073990019 2.100388509 0.338136066 0.197137566 0.178695209 175.0485873 1.001478947 32.18770932 4.172388031 3.00E-14 13.52287867 -1.762252442 NDLAVVDVR ddPTM_HeLa_CUDC101_4h_R1 1 NDLAVVDVR 9 0 P19338 P19338 NCL Nucleolin 0 0 136.52 0.01291 16091000 5261.8 4792.5 4433 4755 5115.5 4731.6 5070.5 5039.4 5234 5440 FALSE FALSE TRUE 4645.01978 4940.151244 4672.661389 4948.929453 4738.139757 4641.352613 5266.070884 5613.064926 5018.252305 5407.642638 0.858973141 0.913549873 0.864084723 0.91517317 0.876193209 0.858294995 0.973820061 1.037987401 0.927992591 1 12.4007841 -4.521428897 5.409358225 0.916154429 1.025069802 0.489039871 0.042802895 0.148480518 14.31334722 0.008378169 0.038748424 3.01E-05 4.521428897 0.108915373 GFAFVT(ph)FESPADAK ddPTM_HeLa_CUDC101_4h_R1 1 GFAFVTFESPADAK 14 0 P38159;H0Y6E7;H3BT71;H3BR27;P38159-3;Q8N7X1;Q96E39;A0A1B0GUK8;O75526 P38159;Q96E39;O75526 RBMX;RBMXL3;RBMXL1;RBMXL2 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-3;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2" 1 0 GFAFVT(1)FESPADAK 154.72 0.0005048 39275000 5110.7 4325.6 4403.6 3780.4 3687.6 4305.5 3876.4 2791.9 4209.9 4859 TRUE FALSE FALSE 4511.631493 4458.866609 4641.671936 3934.581052 3415.573095 4223.379761 4025.914047 3109.718611 4036.36614 4830.098452 0.934066156 0.923141972 0.960989094 0.81459645 0.707143577 0.874387925 0.833505587 0.643820958 0.835669538 1 12.23783688 -6.204662754 3.707219164 0.963899816 0.775847592 0.504150067 0.074656278 0.10738003 3.003326625 0.009674864 0.016263991 6.24E-07 6.204662754 -0.188052224 SSGRNS(ph)PSAASTSSNDSK ddPTM_HeLa_CUDC101_4h_R1 2 SSGRNSPSAASTSSNDSK 18 1 A0A590UJ84;B1AKN3;Q9P2R6-2;Q9P2R6;D6RA28 A0A590UJ84 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 S(0.002)S(0.002)GRNS(0.967)PS(0.029)AASTSSNDSK;S(0.303)S(0.303)GRNS(0.389)PS(0.005)AASTSSNDSK ; 105.56 0.00042557 31340700 2849.99 1359.94 3030.11 2824.41 1825.42 1507.38 1564.38 508.13 2843.62 3699.32 TRUE FALSE FALSE 2515.918493 1401.838139 3193.926912 2939.601648 1690.762403 1478.629238 1624.718661 565.9734653 2726.40478 3677.31628 0.684172451 0.381212284 0.86854833 0.799387767 0.459781611 0.40209466 0.441821844 0.153909379 0.741411555 1 11.84443755 -6.204608691 0.16720938 1.147480789 9.78E-15 0.521726052 0.17347486 3.760368634 0.281327818 0.568663037 1.252264107 6.24E-07 6.204608691 -1.147480789 NDQCYDDIR ddPTM_HeLa_CUDC101_4h_R1 2 NDQCYDDIR 9 0 F8W1H8;F8VUX3;F8VSA4;F8VRE9;F8VTT6;F8VVB7;Q9ULV4;Q9ULV4-2;Q9ULV4-3 F8W1H8 CORO1C Coronin;Coronin-1C 0 0 ; ; 163.38 0.00023546 29623000 6010.4 4946.8 5793.8 5918.2 6083.8 5727.2 5017.7 5126.7 5390.8 3207.2 FALSE FALSE TRUE 5305.870023 5099.205045 6107.030353 6159.569777 5635.010195 5617.963202 5211.23437 5710.302805 5168.588942 3188.123432 1.664261167 1.599437774 1.915556434 1.932036168 1.767500636 1.762153606 1.634577356 1.791117228 1.621201015 1 11.63849177 -8.907073951 0.53823511 0.921862001 1.792111579 0.276144801 0.211703521 0.260547301 0.128049305 0.111865969 0.027804532 1.24E-09 8.907073951 0.870249578 WGEAS(ph)NDEDDPKDK ddPTM_HeLa_CUDC101_4h_R1 2 WGEASNDEDDPKDK 14 1 Q5SXM2;A0A1B0GUB4 Q5SXM2 SNAPC4 snRNA-activating protein complex subunit 4 1 0 WGEAS(1)NDEDDPKDK;WGEAS(1)NDEDDPKDK ; 159.64 0.00025827 58481000 7476.7 5562.6 5148.3 5526.2 5427.8 5097 4466.4 4083.1 5974.3 6487.7 TRUE FALSE FALSE 6600.29256 5733.977113 5426.632671 5751.582322 5027.402008 4999.783217 4638.670544 4547.9036 5728.036825 6449.110872 1.023442253 0.889111263 0.841454392 0.891841129 0.779549632 0.775267059 0.719272879 0.705198544 0.888190161 1 12.65488456 -6.203523339 0.60123928 1.017069232 0.703355941 0.733698059 0.053125435 0.179312333 0.123021842 0.008970882 0.02569379 6.26E-07 6.203523339 -0.313713291 NDQDTWDYTNPNLSGQGDPGSNPNKR ddPTM_HeLa_CUDC101_4h_R1 1 NDQDTWDYTNPNLSGQGDPGSNPNKR 26 1 P14866;M0QXS5;A0A3B3ITJ4;P14866-2 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 0 124.88 3.26E-10 15966000 1068.4 1189.1 1084.4 1078.8 1291.4 895.43 1288.3 1062.8 1061.1 1205 FALSE FALSE TRUE 943.1637716 1225.734762 1143.025944 1122.798127 1196.135995 878.3511646 1337.990163 1183.784856 1017.361009 1197.832606 0.787391967 1.023293868 0.954245141 0.937358126 0.998583599 0.733283733 1.117009301 0.988272359 0.849334877 1 10.22621059 -7.221856286 24.99837919 0.899601667 0.96140838 0.115157714 0.10392946 1267.983466 800785.8783 0.019175472 0.023484806 6.00E-08 7.221856286 0.061806713 RLPSS(ph)PASPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 RLPSSPASPSPK 12 1 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0;Q9H4G0-4;H7C2K6;X6RC15 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 2 0 RLPS(0.403)S(0.598)PAS(0.005)PS(0.995)PK 121.92 0.0059674 19147000 5475.4 5260.4 4601.2 4319.5 4467.1 4709.1 4432.8 3955.3 4764.4 4606.1 TRUE FALSE FALSE 4833.581912 5422.466689 4849.95479 4495.66788 4137.570933 4619.281763 4603.774581 4405.555364 4568.009415 4578.702712 1.055666248 1.18428014 1.059242125 0.981864987 0.903655728 1.008862565 1.005475758 0.962184191 0.997664557 1 12.16072318 -6.200397083 6.292532971 1.043533617 0.971946679 0.359544483 0.056132905 0.265705977 21.66367248 0.009298165 0.01546096 6.30E-07 6.200397083 -0.071586939 IEVLDS(ph)PASK ddPTM_HeLa_CUDC101_4h_R1 4 IEVLDSPASK 10 0 Q8N5I9 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 IEVLDS(0.95)PAS(0.05)K;IEVLDS(0.804)PAS(0.196)K;IEVLDS(1)PASK;IEVLDS(0.996)PAS(0.004)K ;;; 134.99 0.00177 152254000 16973.8 13812.1 12203.7 13139 13547.8 13438.9 11490.8 10529 14890.2 14982.3 TRUE FALSE FALSE 14984.15689 14237.63443 12863.46894 13674.86521 12548.40579 13182.57537 11934.00401 11727.5788 14276.41965 14893.18461 1.006108316 0.95598321 0.863715133 0.918196179 0.842560279 0.885141473 0.80130639 0.78744601 0.958587436 1 13.86236466 -6.19769868 0.566545888 1.009196239 0.797038811 0.789412923 0.03414579 0.237340012 0.143363442 0.007663662 0.022662161 6.34E-07 6.19769868 -0.212157428 LNDPFQPFPGNDS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 LNDPFQPFPGNDSPK 15 0 P42566;B1AUU8;P42566-2 P42566 EPS15 Epidermal growth factor receptor substrate 15 1 0 LNDPFQPFPGNDS(1)PK;LNDPFQPFPGNDS(1)PK ; 111.7 0.0022298 32121000 7044.9 6421.4 6005.7 5436.5 5095.9 6184.6 4735.9 4890.01 6108.5 6728.6 TRUE FALSE FALSE 6219.107501 6619.235723 6330.386308 5658.223969 4719.985609 6066.639059 4918.565249 5446.668972 5856.705045 6688.577988 0.92981012 0.989632734 0.94644726 0.845953202 0.705678489 0.907014775 0.735367855 0.814323909 0.875627832 1 12.70748381 -6.19652623 3.215730882 0.967469424 0.793453539 0.597492878 0.060385392 0.102220432 2.092468951 0.007918501 0.013464931 6.36E-07 6.19652623 -0.174015885 SETIQDTDTQSLVGS(ph)PSTR ddPTM_HeLa_CUDC101_4h_R1 2 SETIQDTDTQSLVGSPSTR 19 0 E9PMR6;Q9NZN5-2;Q9NZN5 E9PMR6 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 0 SETIQDTDTQSLVGS(1)PSTR;SETIQDTDTQSLVGS(0.938)PS(0.008)T(0.054)R ; 229.48 5.02E-34 12966700 4417.6 3566.9 3475.6 3498.6 3045.1 3484.2 3300.7 2583.3 3766.2 3885.2 TRUE FALSE FALSE 3899.775625 3676.791961 3663.501449 3641.28803 2820.46904 3417.74469 3428.009105 2877.37243 3610.955642 3862.090658 1.00975766 0.952021143 0.948579869 0.942828212 0.730295917 0.88494678 0.887604515 0.745029748 0.934974334 1 11.91516631 -6.195866848 1.444573689 1.001465924 0.823061669 0.577310968 0.059315224 0.166045604 0.679748131 0.008603539 0.016642984 6.37E-07 6.195866848 -0.178404255 IDSFSVQS(ph)LDSR ddPTM_HeLa_CUDC101_4h_R1 1 IDSFSVQSLDSR 12 0 F8WF45;A0A2R8Y7M0;P82094;P82094-2 F8WF45 TMF1 TATA element modulatory factor 1 0 IDSFSVQS(0.983)LDS(0.017)R 169.17 1.04E-06 10469000 723.58 700.03 651.32 519.74 537.96 357.74 794.78 434.52 673.14 562.94 TRUE FALSE FALSE 638.7630493 721.5970946 686.5323293 540.9372437 498.2757626 350.9167055 825.4349308 483.9840004 645.3928843 559.5916078 1.141480752 1.289506641 1.226845292 0.966664325 0.890427511 0.627094296 1.475066672 0.864887882 1.153328383 1 9.128230516 -6.194830814 24.58754063 1.09966412 0.970278145 0.145351007 0.213742736 341.4413158 126037.0037 0.031974706 0.053024049 6.39E-07 6.194830814 -0.129385975 T(ph)PSDDEEDNLFAPPK ddPTM_HeLa_CUDC101_4h_R1 1 TPSDDEEDNLFAPPK 15 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 0 T(0.852)PS(0.148)DDEEDNLFAPPK 205.33 7.42E-17 6176300 2583.5 2517.6 2319.4 2398.5 2901 2302.8 2101.4 2273.7 2734.5 2608.1 TRUE FALSE FALSE 2280.666046 2595.164272 2444.79378 2496.321197 2686.99901 2258.877927 2182.451702 2532.528817 2621.782753 2592.586905 0.879687405 1.000994129 0.942993955 0.96286886 1.036416177 0.871283397 0.841804646 0.976834687 1.01126128 1 11.34017663 -6.194538781 0.007212968 1.865619951 6.68E-07 0.089628957 0.06037789 10159.88169 28.04336356 3555.557589 3697.157186 6.39E-07 6.194538781 -1.865619283 YACGLWGLS(ph)PASR ddPTM_HeLa_CUDC101_4h_R1 2 YACGLWGLSPASR 13 0 Q15637-6;H7C0N4;H7C561 Q15637-6 SF1 Splicing factor 1 1 0 YACGLWGLS(0.715)PAS(0.285)R;YACGLWGLS(1)PASR ; 141.34 0.00070901 57712000 2441.4 1692.41 1475.82 1686.15 1900.04 1497.32 1426.24 1120.33 2209.2 2116 TRUE FALSE FALSE 2155.222793 1744.551146 1555.607293 1754.918485 1759.877835 1468.761116 1481.250555 1247.863839 2118.135841 2103.413938 1.024630841 0.829390314 0.739563081 0.834319129 0.836676891 0.69827488 0.704212579 0.593256428 1.006999052 1 11.03851708 -6.193890012 0.463334438 1.027474372 0.619532441 0.798273011 0.062794083 0.406289503 0.161199964 0.02215374 0.07015933 6.40E-07 6.193890012 -0.407941931 SSSPNS(ph)PLPMFR ddPTM_HeLa_CUDC101_4h_R1 2 SSSPNSPLPMFR 12 0 A0A0U1RR27;Q7Z401;Q7Z401-2;H3BTW5 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 S(0.002)SS(0.019)PNS(0.979)PLPMFR;S(0.241)S(0.002)S(0.022)PNS(0.735)PLPMFR ; 152.16 0.00046793 40436000 2827.05 2118.97 2287.3 2144.16 2384.69 2185.97 2110.4 2128.01 2310.28 2264.85 TRUE FALSE FALSE 2495.667485 2184.252954 2410.958357 2231.608113 2208.77617 2144.276264 2191.798835 2370.254057 2215.049281 2251.378571 1.108506369 0.97018466 1.07088092 0.99121851 0.981077193 0.952428122 0.973536331 1.052801198 0.983863535 1 11.13659295 -6.192591574 7.280877666 1.04648663 0.986392235 0.05543493 0.047033393 0.312725466 29.08571486 0.00771365 0.012820652 6.42E-07 6.192591574 -0.060094395 S(ph)SDEDAAGEPK ddPTM_HeLa_CUDC101_4h_R1 2 SSDEDAAGEPK 11 0 E9PHH9;Q9BUI4 E9PHH9 POLR3C DNA-directed RNA polymerase III subunit RPC3 1 0 S(0.967)S(0.033)DEDAAGEPK;S(0.988)S(0.012)DEDAAGEPK ; 219.74 3.17E-32 86833000 5582.1 3641.4 5630.2 6133.1 5242.7 5971.1 5828 3614.6 5371.2 5811.6 TRUE FALSE FALSE 4927.7747 3753.587218 5934.585642 6383.234328 4855.956466 5857.211216 6052.787912 4026.071453 5149.796863 5777.032345 0.852994134 0.649743154 1.027272359 1.104933112 0.840562451 1.013878903 1.047733084 0.696909973 0.891426005 1 12.49611286 -6.191642774 0.006327702 1.830768053 2.98E-05 0 0.145363995 34646.47132 83.70533552 11900.08234 12316.01061 6.43E-07 6.191642774 -1.830738238 NKSNEDQS(ph)MGNWQIK ddPTM_HeLa_CUDC101_4h_R1 1 NKSNEDQSMGNWQIK 15 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 NKS(0.242)NEDQS(0.758)MGNWQIK 123.68 0.0042027 25436000 3128.7 2556.4 2316.3 2471 2597.7 2011 1949.7 2024.9 2648.4 3009.2 TRUE FALSE FALSE 2761.958529 2635.159654 2441.526184 2571.778061 2406.072846 1972.643526 2024.900582 2255.406431 2539.231831 2991.301145 0.923330148 0.880940944 0.816208755 0.859752307 0.804356609 0.659460024 0.676929699 0.753988422 0.848872015 1 11.54655744 -6.190464652 0.395474215 0.994185778 0.64675334 0.644366509 0.059637024 0.381665015 0.110351913 0.016457303 0.053113225 6.45E-07 6.190464652 -0.347432438 SES(ph)PSLTQER ddPTM_HeLa_CUDC101_4h_R1 2 SESPSLTQER 10 0 Q9BXW9;Q9BXW9-1;H7BZJ7;Q9BXW9-3 Q9BXW9 FANCD2 Fanconi anemia group D2 protein 1 0 S(0.001)ES(0.984)PS(0.002)LT(0.013)QER;S(0.024)ES(0.866)PS(0.075)LT(0.035)QER ; 142.19 0.0010474 84060000 5336.5 3936.2 3833.1 4467.7 5254.9 5012.9 4545.2 3173.4 3973.4 4122.5 TRUE FALSE FALSE 4710.96356 4057.469656 4040.32898 4649.912117 4867.256496 4917.287285 4720.509887 3534.647029 3809.61477 4097.979187 1.14958211 0.990114755 0.98593204 1.134684171 1.187721136 1.199929785 1.15191163 0.862534158 0.929632533 1 12.00069694 -6.190405205 24.99710963 1.059334101 1.119439232 0.084446996 0.108210525 362.1112271 127427.3128 0.016121764 0.026734921 6.45E-07 6.190405205 0.060105131 TPS(ph)SPCPASK ddPTM_HeLa_CUDC101_4h_R1 2 TPSSPCPASK 10 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 T(0.003)PS(0.943)S(0.054)PCPAS(0.001)K;T(0.004)PS(0.621)S(0.375)PCPASK ; 142.19 0.0010474 208660000 13822.3 8759.8 12218.8 12288.1 10763.2 9505.2 8543.1 3479.2 12529.1 12711.8 TRUE FALSE FALSE 12202.07095 9029.679055 12879.38529 12789.26183 9969.220179 9323.904147 8872.610229 3875.258065 12012.64519 12636.18965 0.96564481 0.714588757 1.019245963 1.012113793 0.788941956 0.737873078 0.702158679 0.306679321 0.950654076 1 13.62527387 -4.237010842 0.733539459 0.968135605 1.37E-16 0.777489407 0.099338958 0.921856649 0.339096692 0.016391285 0.740580094 5.79E-05 4.237010842 -0.968135605 down NEDEEEEEEEKDEAEDLLGR ddPTM_HeLa_CUDC101_4h_R1 4 NEDEEEEEEEKDEAEDLLGR 20 1 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 0 ;;; ;;; 161.1 8.18E-06 280201000 8776.9 6298.07 7064.1 6672.8 7062.7 7089.2 6443.6 6848 7928 6229.6 FALSE FALSE TRUE 7748.085087 6492.106072 7446.006614 6944.945626 6541.698692 6953.985321 6692.13181 7627.548639 7601.204484 6192.546062 1.25119539 1.048374288 1.202414409 1.121500843 1.056382726 1.122960613 1.080675338 1.231730626 1.227476454 1 12.59631698 -9.635247533 1.469908897 1.000278225 1.150289429 0 0.096789708 0.35004984 1.363157913 0.050847945 0.01165779 2.32E-10 9.635247533 0.150011204 NEDLEEIASTDLK ddPTM_HeLa_CUDC101_4h_R1 2 NEDLEEIASTDLK 13 0 P78318 P78318 IGBP1 Immunoglobulin-binding protein 1 0 0 ; ; 192.86 1.69E-11 6689400 2221.27 2313.3 2039.93 2280.39 2713.78 2185.27 2345.5 2279.09 2350.44 2175.94 FALSE FALSE TRUE 1960.896098 2384.570031 2150.214786 2373.394161 2513.589856 2143.589616 2435.966721 2538.532393 2253.553868 2162.997412 0.906564237 1.102437764 0.994090318 1.09727092 1.162086391 0.99102736 1.126199554 1.17361786 1.041866188 1 11.07881622 -6.77422356 1.306946891 0.958088541 1.10535374 0.291106666 0.069160307 0.264975743 0.909070692 0.012250156 0.018179437 1.68E-07 6.77422356 0.147265199 ELAPAWEDTS(ph)PEQDNR ddPTM_HeLa_CUDC101_4h_R1 2 ELAPAWEDTSPEQDNR 16 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 ELAPAWEDT(0.001)S(0.999)PEQDNR;ELAPAWEDT(0.407)S(0.593)PEQDNR ; 302.15 4.87E-123 64785000 6163.8 4418.9 4633.2 4509.7 4800.1 4381 4053.9 3960.7 4795.5 4870.6 TRUE FALSE FALSE 5441.288708 4555.041071 4883.684807 4693.625059 4446.006186 4297.439724 4210.260281 4411.570078 4597.82746 4841.629455 1.123854842 0.940807452 1.008686198 0.969430871 0.918287165 0.887601946 0.869595726 0.911174661 0.94964464 1 12.24127695 -6.189982703 0.971310511 1.054045336 0.885510657 0.399163299 0.05419187 0.265320838 0.493953058 0.010081577 0.022809405 6.46E-07 6.189982703 -0.168534679 ALS(ph)PEGALR ddPTM_HeLa_CUDC101_4h_R1 1 ALSPEGALR 9 0 K7EPS7;I3L2Z9;I3L100;I3L2W2;Q96JN8-2;Q96JN8 K7EPS7 NEURL4 Neuralized-like protein 4 1 0 ALS(1)PEGALR 96.171 0.021331 8055200 2888.1 2616.5 2024.2 2119.9 2107.3 2080.3 1830.5 1536 2350.5 2581.4 TRUE FALSE FALSE 2549.561296 2697.111264 2133.634375 2206.358685 1951.848677 2040.621744 1901.102998 1710.852031 2253.611395 2566.045718 0.993575944 1.051076855 0.83148728 0.859828283 0.760644545 0.795239823 0.740868717 0.666727026 0.878242885 1 11.32533116 -6.188910086 0.948620194 1.002729762 0.725276872 0.735766997 0.060964979 0.130429166 0.231465029 0.008022542 0.018375462 6.47E-07 6.188910086 -0.277452891 GLWSTDS(ph)AEEDKETK ddPTM_HeLa_CUDC101_4h_R1 1 GLWSTDSAEEDKETK 15 1 Q99549-2;Q99549;A0A0A0MT47 Q99549-2 MPHOSPH8 M-phase phosphoprotein 8 1 0 GLWS(0.012)T(0.067)DS(0.921)AEEDKETK 89.468 0.006665 108130000 6630 5813.4 5633.4 5503.3 4618.4 5590.6 5666 5468.6 4715.6 6368.5 TRUE FALSE FALSE 5852.84145 5992.503963 5937.958644 5727.748361 4277.709833 5483.96862 5884.539518 6091.123319 4521.220972 6330.619879 0.924528966 0.946590394 0.937974283 0.90476896 0.675717373 0.866260923 0.929536069 0.962168545 0.71418298 1 12.62813106 -6.188677239 3.674228408 0.960419588 0.857595553 0 0.106885133 0.245780201 6.485898955 0.011929338 0.020173705 6.48E-07 6.188677239 -0.102824035 EEPS(ph)PVKAEVAEK ddPTM_HeLa_CUDC101_4h_R1 1 EEPSPVKAEVAEK 13 1 P46821;D6RA40;D6RA32 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 EEPS(1)PVKAEVAEK 153.48 0.00097077 105410000 5112.2 4561.8 3756.8 4032.5 3288.7 4160.1 3663.8 3357.8 4772 4154.2 TRUE FALSE FALSE 4512.955666 4702.343651 3959.903972 4196.96278 3046.099153 4080.753024 3805.113993 3740.038379 4575.29614 4129.490634 1.092860129 1.13872244 0.958932789 1.016339097 0.737645251 0.98819767 0.921448753 0.905690002 1.107956537 1 12.01174812 -6.188246107 2.316674513 1.050101841 0.899585995 0.495021233 0.079054878 0.213423503 2.239318574 0.012081656 0.021313403 6.48E-07 6.188246107 -0.150515847 ASPAPSDSSPGEPFVGGPVS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 2 ASPAPSDSSPGEPFVGGPVSSPR 23 0 O60346 O60346 PHLPP1 PH domain leucine-rich repeat-containing protein phosphatase 1 1 0 ASPAPSDSSPGEPFVGGPVS(0.759)S(0.241)PR;ASPAPSDSSPGEPFVGGPVS(0.5)S(0.5)PR ; 196.83 3.21E-19 10331000 1110.28 1122.58 1108.78 950.54 954.12 804.11 867.87 1260.98 1003.97 1253.46 TRUE FALSE FALSE 980.1346615 1157.165359 1168.724001 989.3071298 883.7364685 788.7729415 901.3440366 1404.524866 962.5859317 1246.004364 0.786622174 0.928700888 0.937977454 0.79398368 0.709256319 0.633041877 0.723387544 1.127223071 0.77253817 1 10.28309341 -6.187646497 6.154302421 0.901926568 0.77818831 0.07734268 0.138728953 0.359254436 23.95741157 0.02151332 0.03583888 6.49E-07 6.187646497 -0.123738258 S(ph)LPNLSR ddPTM_HeLa_CUDC101_4h_R1 2 SLPNLSR 7 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 S(1)LPNLSR;S(1)LPNLSR ; 99.815 0.022121 59314000 4649.1 3739.5 3542.8 3622.6 3744.9 3932.4 3264.2 3041.3 4246.3 4000.6 TRUE FALSE FALSE 4104.139546 3854.709563 3734.334484 3770.345286 3468.646188 3857.396022 3390.101287 3387.509299 4071.265717 3976.804253 1.032019502 0.96929829 0.939028991 0.948084202 0.872219493 0.969973822 0.852468734 0.851816957 1.023753109 1 11.95739384 -6.186626565 0.695760039 1.016247486 0.871626979 0.719528778 0.033742049 0.284743731 0.265409088 0.007247674 0.019593053 6.51E-07 6.186626565 -0.144620507 EGITGPPADSSKPIGPDDAIDALSSDFTCGS(ph)PTAAGKK ddPTM_HeLa_CUDC101_4h_R1 1 EGITGPPADSSKPIGPDDAIDALSSDFTCGSPTAAGKK 38 2 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;H0YA91;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 1 0 EGITGPPADSSKPIGPDDAIDALS(0.069)S(0.069)DFT(0.069)CGS(0.423)PT(0.369)AAGKK 62.554 6.35E-05 93804000 2850.2 2525.1 2571.2 2817.7 3151.3 2991.2 2678.2 2995.8 2770 2992.3 TRUE FALSE FALSE 2516.103877 2602.895338 2710.206849 2932.617985 2918.834877 2934.147844 2781.499071 3336.829763 2655.819428 2974.501667 0.845890895 0.875069383 0.911146522 0.985919093 0.981285339 0.986433417 0.935114309 1.121811361 0.892861973 1 11.53843227 -6.186605901 4.320934889 0.91952717 0.997800775 0.395518696 0.058667061 0.282250198 10.05639805 0.011043452 0.0185544 6.51E-07 6.186605901 0.078273605 GT(ph)VYLTPYRVIFLSKGKDAMQSFMMPFYLMK ddPTM_HeLa_CUDC101_4h_R1 1 GTVYLTPYRVIFLSKGKDAMQSFMMPFYLMK 31 3 K7EIJ0;K7ENL2;A6NG10;K7EMC9;Q969T9-2;Q969T9 K7EIJ0 WBP2 WW domain-binding protein 2 1 0 GT(0.852)VY(0.003)LT(0.143)PY(0.001)RVIFLS(0.001)KGKDAMQSFMMPFYLMK 46.772 0.0093799 215720000 3340.2 4293.8 2819.8 2901.9 2618.2 3210.9 2507.2 2621.5 3058.7 3242.5 TRUE FALSE FALSE 2948.666819 4426.086889 2972.246917 3020.252025 2425.060602 3149.657432 2603.903544 2919.920964 2932.619091 3223.213466 0.914822071 1.373190741 0.922137782 0.937031338 0.752373564 0.977179286 0.807859477 0.905903687 0.909843274 1 11.65428402 -6.183986733 3.168926173 0.994205298 0.865608164 0.217037993 0.139157693 0.375201739 7.360539416 0.021242995 0.036326646 6.55E-07 6.183986733 -0.128597134 NELEIPGQYDGR ddPTM_HeLa_CUDC101_4h_R1 2 NELEIPGQYDGR 12 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 0 ; ; 123.01 0.000268 4447700 4502.2 2635.2 3318.7 3274.6 3767.5 3345.5 3852.4 3090.3 5125.8 3596.4 FALSE FALSE TRUE 3974.458941 2716.387389 3498.118961 3408.152342 3489.579031 3281.690161 4000.988358 3442.087261 4914.512354 3575.008453 1.111734138 0.759826844 0.978492501 0.953327072 0.976103715 0.917953119 1.119154937 0.962819335 1.37468552 1 11.80373094 NELMYQLEQDHDLQAILQER ddPTM_HeLa_CUDC101_4h_R1 4 NELMYQLEQDHDLQAILQER 20 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 ;;; ;;; 128.4 0.0010578 31655000 5373.66 3961 3233.94 4039.92 4219.16 4112.67 3585.85 3254.3 3492.53 4442.98 FALSE FALSE TRUE 4743.767721 4083.033715 3408.776579 4204.6854 3907.920973 4034.227672 3724.157436 3624.756358 3348.566435 4416.552957 1.074088269 0.924484265 0.771818341 0.952028752 0.884835076 0.913433556 0.843227166 0.820720683 0.758185505 1 12.1087051 -7.086918507 4.868062602 1.034444084 0.868855972 0 0.100443884 0.092854254 3.768771174 0.008698337 0.01077193 8.19E-08 7.086918507 -0.165588112 GGGT(ph)PDANSLAPPGK ddPTM_HeLa_CUDC101_4h_R1 1 GGGTPDANSLAPPGK 15 0 Q9BRQ0;Q5T171 Q9BRQ0 PYGO2 Pygopus homolog 2 1 0 GGGT(0.757)PDANS(0.243)LAPPGK 108.06 0.014097 255360000 5605 4572.9 4742.1 4468.5 4681.5 4627.1 4213.5 4678.4 5228.4 5008 TRUE FALSE FALSE 4947.990397 4713.785629 4998.47227 4650.744745 4336.155072 4538.845777 4376.016106 5210.970145 5012.883139 4978.212193 0.993929187 0.946883228 1.00406975 0.934219869 0.871026566 0.911742128 0.879033664 1.04675533 1.006964538 1 12.28141201 -6.18257692 4.961383704 0.992951944 0.920598797 0.290664893 0.047687751 0.182447524 8.099261373 0.006712661 0.011238964 6.57E-07 6.18257692 -0.072353146 S(ph)SPGAVAGLSNAPGTPR ddPTM_HeLa_CUDC101_4h_R1 1 SSPGAVAGLSNAPGTPR 17 0 V9GYB2;U3KPY3;Q9BWG4-2;Q9BWG4 V9GYB2 SSBP4 Single-stranded DNA-binding protein 4 1 0 S(0.5)S(0.5)PGAVAGLSNAPGTPR 195.45 2.24E-16 72529000 984.44 764.02 827.83 694.17 646.66 830.91 579.01 690.97 844.63 841.76 TRUE FALSE FALSE 869.0454355 787.5585506 872.5849938 722.4812531 598.9571801 815.0617761 601.3426097 769.6272318 809.8139939 836.7531741 1.038592338 0.941207724 1.042822449 0.863434135 0.715811064 0.974076707 0.718661881 0.919778085 0.967805105 1 9.708658308 -6.182367452 5.008645864 1.013312619 0.829750483 0.497313334 0.079776992 0.112866811 5.083316966 0.010533963 0.017633046 6.57E-07 6.182367452 -0.183562136 (ac)SLLDGLASS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SLLDGLASSPR 11 0 E9PI10;E9PK87;F8W6N5;Q3YBR2 E9PI10 TBRG1 Transforming growth factor beta regulator 1 1 0 SLLDGLAS(0.04)S(0.96)PR 147.96 2.85E-16 3101600 0 0 0 137.49 114.51 260.98 130.86 67.163 190.39 129.49 TRUE FALSE FALSE 0 0 0 143.0974365 106.0628254 256.0022413 135.907314 74.80856444 182.5420436 128.7197877 0 0 0 1.111697269 0.82398229 1.98883362 1.05583855 0.581173771 1.418135058 1 7.008090042 -6.182357784 8.872602489 0.432008562 1.143826946 0.244554299 0.547396816 0.399473596 42.2104376 0.082933309 0.137698473 6.57E-07 6.182357784 0.711818383 NENLAANFLLQQNFDED ddPTM_HeLa_CUDC101_4h_R1 3 NENLAANFLLQQNFDED 17 0 P54727;P54727-2 P54727 RAD23B UV excision repair protein RAD23 homolog B 0 0 ;; ;; 101.32 0.0026099 236810000 16056.05 14886.77 13584.46 12920.94 14866.65 14500.69 13252.02 12735.48 14664.41 14733.98 FALSE FALSE TRUE 14173.98416 15345.41374 14318.877 13447.91178 13769.96685 14224.1135 13763.15485 14185.23556 14059.93681 14646.34163 0.967749115 1.047730152 0.977641882 0.918175482 0.940164254 0.971171768 0.939699155 0.968517321 0.959962369 1 13.83825273 -6.507900091 24.91867087 0.990191584 0.94800182 0.413383254 0.026080771 529.9688667 881662.9112 0.003949507 0.005901896 3.11E-07 6.507900091 -0.042189763 NENLAANFLLSQNFDDE ddPTM_HeLa_CUDC101_4h_R1 1 NENLAANFLLSQNFDDE 17 0 P54725-2;P54725-3;P54725;K7EQ16 P54725-2 RAD23A UV excision repair protein RAD23 homolog A 0 0 134.18 0.0013166 82789000 4912.2 4491.6 4158.9 4137 4080.5 4412.5 4043.5 3263.4 4342.4 4262.5 FALSE FALSE TRUE 4336.399362 4629.980872 4383.742714 4305.724742 3779.489645 4328.338914 4199.459149 3634.892265 4163.404434 4237.14646 1.023424468 1.092712021 1.034597873 1.016185016 0.89198938 1.021522139 0.991105497 0.857863257 0.9825963 1 12.04887728 -5.884212585 10.36270181 1.020580697 0.950063548 0.390272763 0.050931002 0.295872875 25.60995912 0.007251089 0.013154611 1.31E-06 5.884212585 -0.070517148 SGAQASST(ph)PLS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 2 SGAQASSTPLSPTR 14 0 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 SGAQAS(0.032)S(0.16)T(0.808)PLS(0.974)PT(0.026)R;SGAQAS(0.076)S(0.369)T(0.555)PLS(0.831)PT(0.169)R ; 163.34 0.00011015 330200000 14069.4 12693.8 11409.1 11615.8 14245.4 12407.6 9874.2 3299.8 14133.7 12313.6 TRUE FALSE FALSE 12420.20626 13084.88093 12025.91046 12089.54253 13194.54522 12170.9457 10255.0512 3675.435894 13551.1029 12240.35816 1.014693042 1.06899494 0.982480275 0.987678822 1.077954178 0.994329214 0.837806465 0.300271924 1.107083855 1 13.57935815 -4.236279949 2.100128043 1.013296091 0.072433785 0.963405474 0.042750044 0.069530313 0.31693585 0.004364451 0.126205829 5.80E-05 4.236279949 -0.940862306 down ILATDVSSKNT(ph)PDSK ddPTM_HeLa_CUDC101_4h_R1 1 ILATDVSSKNTPDSK 15 1 H0Y8J2;Q03188;Q03188-2 H0Y8J2 CENPC Centromere protein C 1 0 ILATDVSSKNT(0.801)PDS(0.199)K 145.33 0.0054908 10908000 1439.4 1104.5 1300 990.64 1119.7 974.8 928.28 914.24 1233.8 1338.9 TRUE FALSE FALSE 1270.675714 1138.528336 1370.281932 1031.042581 1037.101962 956.2073141 964.0840706 1018.313386 1182.942242 1330.936163 0.954723261 0.855434218 1.029562476 0.774674706 0.779227427 0.718447166 0.724365373 0.765110615 0.888804643 1 10.37822566 -6.182225757 5.407833695 0.970241585 0.747746354 0.766770672 0.052508231 0.063893719 3.262942221 0.007179307 0.011995397 6.57E-07 6.182225757 -0.222495231 IYHLPDAES(ph)DEDEDFK ddPTM_HeLa_CUDC101_4h_R1 4 IYHLPDAESDEDEDFK 16 0 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C2Y0 B5MCX3 2-Sep Septin-2 1 0 IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK;IYHLPDAES(1)DEDEDFK ;;; 162.81 4.25E-05 88369000 18167.7 13941.1 12705.7 12503.6 11348.1 12471 11124.6 9766.9 14113.9 13106.7 TRUE FALSE FALSE 16038.10975 14370.60877 13392.60857 13013.55085 10510.97327 12233.13645 11553.67955 10878.72442 13532.11907 13028.74077 1.230979266 1.102992916 1.027928087 0.998834123 0.806752814 0.938934673 0.886784054 0.83497896 1.03863599 1 13.66941003 -6.18188276 1.778332568 1.110241721 0.873760788 0.669389464 0.069376614 0.194188035 1.200184189 0.014975644 0.027706062 6.58E-07 6.18188276 -0.236480933 DSLGDFIEHYAQLGPS(ph)SPEQLAAGAEEGGGPRR ddPTM_HeLa_CUDC101_4h_R1 3 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRR 33 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 DSLGDFIEHYAQLGPS(0.5)S(0.5)PEQLAAGAEEGGGPRR;DSLGDFIEHYAQLGPS(0.5)S(0.5)PEQLAAGAEEGGGPRR;DSLGDFIEHY(0.013)AQLGPS(0.493)S(0.493)PEQLAAGAEEGGGPRR ;; 124.86 4.04E-18 67496000 5051.04 5275.2 4642.36 4547.41 7049.72 5424.65 6105.08 5450 5442.22 4107.888 TRUE FALSE FALSE 4458.964748 5437.722659 4893.340024 4732.873035 6529.676201 5321.183839 6340.554981 6070.40597 5217.889388 4083.454099 1.091959072 1.331647798 1.198333544 1.159036668 1.599057083 1.303108523 1.552743052 1.486586067 1.277812671 1 11.9955743 -6.180302487 0.383516888 0.994270243 1.595360253 0.445608288 0.139916655 0.594126478 0.161157559 0.04344298 0.141475321 6.60E-07 6.180302487 0.60109001 QPSS(ph)PYEDKDK ddPTM_HeLa_CUDC101_4h_R1 3 QPSSPYEDKDK 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 QPS(0.035)S(0.965)PYEDKDK;QPS(0.069)S(0.93)PYEDKDK;QPS(0.136)S(0.833)PY(0.031)EDKDK ;; 187.11 3.83E-10 307860000 18592.6 11776.9 13866.8 13949.5 11912.2 12278.6 11412 8619.1 14447.1 17417.4 TRUE FALSE FALSE 16413.20361 12139.73233 14616.48115 14518.4209 11033.46074 12044.40616 11852.16466 9600.263504 13851.58442 17313.80053 0.947983869 0.701159304 0.844209862 0.838546157 0.63726394 0.695653513 0.684550145 0.554486202 0.80003142 1 14.07963482 -6.180191698 0.349076088 1.018595722 0.536488302 0.509849338 0.093226759 0.590212801 0.134217176 0.033783728 0.108743905 6.60E-07 6.180191698 -0.482107421 WAHDKFSGEEGEIEDDES(ph)GTENREEKDNIQPTTE ddPTM_HeLa_CUDC101_4h_R1 3 WAHDKFSGEEGEIEDDESGTENREEKDNIQPTTE 34 3 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFSGEEGEIEDDES(0.482)GT(0.482)ENREEKDNIQPT(0.033)T(0.002)E;WAHDKFSGEEGEIEDDES(0.497)GT(0.497)ENREEKDNIQPT(0.005)T(0.001)E;WAHDKFSGEEGEIEDDES(0.753)GT(0.246)ENREEKDNIQPT(0.001)TE ;; 66.36 0.00010753 183830000 4191.87 4665.2 4113 5176.9 7120.2 4957 5112.5 6072.4 5482.5 4838.2 TRUE FALSE FALSE 3700.505353 4808.929282 4335.361221 5388.036358 6594.957031 4862.453484 5309.690838 6763.657471 5256.509029 4809.422171 0.769428264 0.999897516 0.901430789 1.120308463 1.371257668 1.011026546 1.104018456 1.406334738 1.092960618 1 12.23164786 -6.179751853 3.653187013 0.898278768 1.203795574 0.43258884 0.138804866 0.145088786 3.711911984 0.020770087 0.035231579 6.61E-07 6.179751853 0.305516805 NETGLLSSIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 NETGLLSSIKK 11 1 Q05D32;H0YMH7;Q05D32-2;H0YNU2;H0YNW9 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 0 1 ; NETGLLSSIK(1)K;NETGLLSSIK(1)K 182.35 1.78E-05 1105090 622.99 547.83 608.78 530.56 552.76 587.91 587.52 527.63 430.72 811.51 FALSE TRUE FALSE 549.9640566 564.707993 641.6924883 552.1985301 511.9839961 576.6965963 610.1808432 587.6932664 412.9655393 806.6831024 0.681759733 0.700036968 0.795470348 0.684529685 0.634677973 0.71489857 0.756407121 0.728530528 0.511930321 1 9.655858226 -9.264118423 0.765871533 1.021022951 0.709376597 0 0.157147098 0.218887803 0.206167066 0.043013695 0.009104288 5.44E-10 9.264118423 -0.311646354 ALS(ph)PVTSR ddPTM_HeLa_CUDC101_4h_R1 2 ALSPVTSR 8 0 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;Q96L91-4;A0A0A0MR72;A0A0A0MR80 Q96L91-3 EP400 E1A-binding protein p400 1 0 ALS(0.876)PVT(0.122)S(0.002)R;ALS(0.993)PVT(0.007)SR ; 97.565 0.021072 168357000 10305.2 9097.6 8205.7 8156.9 8926 8179.3 7632.8 7360.1 8777.6 9193.5 TRUE FALSE FALSE 9097.240078 9377.886273 8649.324963 8489.573639 8267.546763 8023.29348 7927.199653 8197.944033 8415.783613 9138.816653 0.995450552 1.0261598 0.946438176 0.92895765 0.904662724 0.877935709 0.8674208 0.897046559 0.920883297 1 13.15779165 -6.17947756 1.304095423 0.999968745 0.881108876 0.677449996 0.029356097 0.076259367 0.255256386 0.002468562 0.00497464 6.61E-07 6.17947756 -0.118859868 HSPPDDLGS(ph)S(ph)FY(ph)PELGPYS(ph)SRDPEVLR ddPTM_HeLa_CUDC101_4h_R1 1 HSPPDDLGSSFYPELGPYSSRDPEVLR 27 1 H0YCZ3;Q5VSG8-3;Q5VSG8 H0YCZ3 MANEAL "Glycoprotein endo-alpha-1,2-mannosidase-like protein" 4 0 HS(0.121)PPDDLGS(0.91)S(0.959)FY(0.941)PELGPY(0.333)S(0.368)S(0.368)RDPEVLR 40.668 0.0029163 0 369.12 409.23 363.71 446.07 513.58 654.63 439.89 317.17 493.79 427.06 TRUE FALSE FALSE 325.8523131 421.8378912 383.3732628 464.2626627 475.6942266 642.1440234 456.8567047 353.2753508 473.4357672 424.5198281 0.767578548 0.993682423 0.903075045 1.093618323 1.120546545 1.512636115 1.07617283 0.832176326 1.115226512 1 8.729688129 -6.179012819 2.387563412 0.895653264 1.156696341 0.143775118 0.18028187 0.279776742 3.117637924 0.027874579 0.049162564 6.62E-07 6.179012819 0.261043077 QQFILT(ph)SPDGAGTGK ddPTM_HeLa_CUDC101_4h_R1 1 QQFILTSPDGAGTGK 15 0 C9JMI6;C9JKS0;P49116;P49116-2 C9JMI6 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 QQFILT(0.5)S(0.5)PDGAGTGK 105.14 0.017546 6765800 2640.3 2081.8 2161.3 1727.6 2232.7 2002.3 1517.9 620.22 2494.7 2590.8 TRUE FALSE FALSE 2330.808036 2145.93779 2278.146416 1798.058995 2067.998169 1964.109464 1576.445911 690.8233378 2391.86741 2575.389806 0.905031165 0.833247761 0.884583145 0.698169648 0.802984528 0.762645507 0.612119341 0.268240301 0.928739954 1 11.3305751 -4.234100439 0.424826168 0.960781772 1.88E-28 0.834494503 0.081002907 1.479345137 0.176860964 0.02077249 0.720881429 5.83E-05 4.234100439 -0.960781772 down VT(ph)SPTTYVLDEDEPR ddPTM_HeLa_CUDC101_4h_R1 1 VTSPTTYVLDEDEPR 15 0 J3KNS1;Q9UPW5-2;Q9UPW5;Q9UPW5-3 J3KNS1 AGTPBP1 Cytosolic carboxypeptidase 1 1 0 VT(0.498)S(0.498)PT(0.001)T(0.002)YVLDEDEPR 161.49 0.000263 4718200 1420.9 990.03 1045.7 1167.9 1460.9 1330.7 1196 845.14 1336.4 1063.1 TRUE FALSE FALSE 1254.344256 1020.531651 1102.233705 1215.53201 1353.132318 1305.319115 1242.130121 941.3473214 1281.313026 1056.776634 1.186953057 0.965702324 1.043014834 1.150226047 1.280433607 1.235189228 1.175395141 0.89077227 1.212472897 1 10.04545476 -6.177866783 6.837945825 1.076358227 1.161012196 0.061301917 0.11958527 0.491916511 34.42011229 0.018448944 0.030708115 6.64E-07 6.177866783 0.084653968 S(ph)PTESVNTPVGK ddPTM_HeLa_CUDC101_4h_R1 2 SPTESVNTPVGK 12 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 S(0.997)PT(0.003)ESVNTPVGK;S(0.993)PT(0.007)ESVNTPVGK ; 169.17 1.04E-06 27594000 4773.1 4077.9 3909.2 3527 3729.3 3792.3 3521.4 3060.8 3593.4 3901.7 TRUE FALSE FALSE 4213.604454 4203.535265 4120.543177 3670.846305 3454.196969 3719.968196 3657.221578 3409.2291 3445.278531 3878.492515 1.086402626 1.083806466 1.062408439 0.946462135 0.890602974 0.959127337 0.942949242 0.879008813 0.888303514 1 11.9212803 -6.177844091 4.547257362 1.047201127 0.922554695 0.393898947 0.059520118 0.100887287 3.763397854 0.006300494 0.010586212 6.64E-07 6.177844091 -0.124646432 NFEDVAFDEK ddPTM_HeLa_CUDC101_4h_R1 1 NFEDVAFDEK 10 0 P07237;H7BZ94;H0Y3Z3 P07237 P4HB Protein disulfide-isomerase 0 0 135.99 0.0092484 23569000 3760.4 3170.1 3155.3 3338.3 3821.3 3246.8 2928 3460.8 3130.6 3708 FALSE FALSE TRUE 3319.611612 3267.767024 3325.885062 3474.450303 3539.410312 3184.8727 3040.933941 3854.763483 3001.555343 3685.944651 0.900613527 0.886548045 0.902315519 0.942621399 0.960245106 0.864058742 0.825008031 1.045800696 0.814324584 1 11.84781869 -9.229748799 0.901641185 1.001549456 0.911780696 0 0.080610087 0.653241946 0.929585331 0.039239732 0.01018832 5.89E-10 9.229748799 -0.08976876 NFEDVAFDEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 NFEDVAFDEKK 11 1 P07237;H7BZ94;H0Y3Z3 P07237 P4HB Protein disulfide-isomerase 0 1 NFEDVAFDEK(1)K 85.813 0.03051 465930 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 KPATPAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLREER ddPTM_HeLa_CUDC101_4h_R1 11 KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREER 35 3 P29692-2;E9PQ49;P29692;P29692-4;P29692-3;E9PRY8;A0A087X1X7;E9PK01;E9PQZ1;E9PI39;E9PL71;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 1 0 KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER ;;;;;;;;;; 92.545 3.46E-10 6664768000 21766 23403.64 23381.68 23758 31829.3 25473.4 24854.15 29791.1 26898.17 25150.75 TRUE FALSE FALSE 19214.62248 24124.67841 24645.76435 24726.95393 29481.31595 24987.53734 25812.78289 33182.3984 25789.41605 25001.15222 0.768549477 0.964942663 0.98578514 0.989032574 1.17919829 0.99945543 1.032463731 1.327234765 1.0315291 1 14.60970697 -6.176763774 1.187575183 0.893060798 1.12538566 0.34511304 0.111143048 0.340335455 0.946747102 0.020297179 0.042402133 6.66E-07 6.176763774 0.232324862 NFELVDSSPCK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 NFELVDSSPCKK 12 1 A0A087WUU7;Q96GX5-2;Q96GX5-3;Q96GX5 A0A087WUU7 MASTL Serine/threonine-protein kinase greatwall 0 1 ; NFELVDSSPCK(1)K;NFELVDSSPCK(1)K 259.18 3.54E-52 1870460 1354.92 1499.54 1177.36 1220.12 1405.06 1495.68 1202.19 1053.68 1596.89 954.39 FALSE TRUE FALSE 1196.098332 1545.73905 1241.011643 1269.881767 1301.411523 1467.152396 1248.558871 1173.626672 1531.065518 948.7132458 1.260758545 1.629300589 1.308099838 1.33853066 1.371764892 1.546465597 1.316055064 1.237072084 1.613833817 1 9.88982828 -8.316354518 0.850188947 1.030617936 1.38830062 0 0.217141462 0.260202876 0.397473568 0.043615655 0.026317049 4.83E-09 8.316354518 0.357682685 NFGEDMDDER ddPTM_HeLa_CUDC101_4h_R1 4 NFGEDMDDER 10 0 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YBN4 P11940 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 0 ;;; ;;; 215.72 9.47E-24 294206000 16671.5 12860.4 12632.9 12472.4 12222.7 12747.9 11478.8 11444.7 13901.2 13092.1 FALSE FALSE TRUE 14717.29204 13256.61368 13315.87279 12981.07838 11321.05577 12504.75505 11921.54116 12747.51839 13328.18665 13014.22761 1.130861737 1.018624699 1.023178108 0.997452847 0.8698984 0.960852647 0.916039086 0.979506335 1.024124293 1 13.66780207 -6.244547886 1.823578019 1.059753819 0.933296343 0.539303739 0.04496882 0.215274525 1.396308921 0.009076641 0.016248956 5.69E-07 6.244547886 -0.126457476 NFGEDMDDERLK ddPTM_HeLa_CUDC101_4h_R1 4 NFGEDMDDERLK 12 1 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YBN4 P11940 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 0 ;;; ;;; 128.57 0.0023869 154505000 15542 14450 13863.7 14188.1 15027.4 13670.1 13271.8 14257.2 15550 15276.6 FALSE FALSE TRUE 13720.19032 14895.18737 14613.21356 14766.75204 13918.85864 13409.36562 13783.69777 15880.18202 14909.02242 15185.7341 0.903492069 0.980867126 0.96229879 0.972409496 0.916574632 0.883023865 0.907674116 1.045730283 0.981778182 1 13.89042903 -5.762109674 24.99853072 0.957348945 0.932121906 0.053938532 0.047199347 49.26891883 1837586.475 0.007717751 0.014628016 1.73E-06 5.762109674 -0.025227039 NFLGEK(ac)YIR ddPTM_HeLa_CUDC101_4h_R1 1 NFLGEKYIR 9 1 H0Y9V9;E7ESE0;D6RAN4;A0A2R8Y5Y7;P32969 H0Y9V9 RPL9 60S ribosomal protein L9 0 1 NFLGEK(1)YIR 87.913 0.032754 456210 296.32 250.6 204.14 185.67 303.55 246.92 132.28 128.47 458.94 205.17 FALSE TRUE FALSE 261.5858188 258.320689 215.1764259 193.2424251 281.1577213 242.2104124 137.3820839 143.0945055 440.0222989 203.9496397 1.282600053 1.266590563 1.055046855 0.947500694 1.378564442 1.187599119 0.673607877 0.701616858 2.157504664 1 7.672069148 -4.759437778 24.99985017 1.147150164 0.687612186 0.26226695 0.343366566 24.77816733 309452.9701 0.020512552 0.069761494 1.74E-05 4.759437778 -0.459537979 ANGLPAGPEPAS(ph)EPGSPYPEGPR ddPTM_HeLa_CUDC101_4h_R1 1 ANGLPAGPEPASEPGSPYPEGPR 23 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5;A0A5F9ZH45 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 ANGLPAGPEPAS(0.706)EPGS(0.294)PYPEGPR 77.169 0.00066208 5655300 1586.1 1628 1374.8 1376.2 1336.2 1494.5 1389.3 1041 1491.1 1608.6 TRUE FALSE FALSE 1400.179762 1678.15675 1449.125847 1432.327384 1237.631188 1465.994903 1442.885766 1159.503232 1429.636227 1599.031976 0.875642128 1.049482922 0.90625195 0.895746556 0.773987767 0.916801493 0.902349539 0.725128234 0.894063564 1 10.64298307 -6.175764371 2.680285744 0.947992569 0.841257359 0.362052591 0.07117601 0.266433098 3.739008371 0.011511787 0.020052501 6.67E-07 6.175764371 -0.10673521 GEAEQS(ph)EEEADEEDKAEDAR ddPTM_HeLa_CUDC101_4h_R1 2 GEAEQSEEEADEEDKAEDAR 20 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 GEAEQS(1)EEEADEEDKAEDAR;GEAEQS(1)EEEADEEDKAEDAR ; 90.06 0.0010907 40006000 6214.1 4809.8 3665.4 4095.9 2901.3 3997.3 3273.5 2665.67 4838.7 3811.8 TRUE FALSE FALSE 5485.692618 4957.984237 3863.562611 4262.948506 2687.276879 3921.058162 3399.759992 2969.119098 4639.246738 3789.127244 1.447745685 1.308476575 1.019644462 1.125047598 0.709207347 1.034818287 0.897240914 0.783589177 1.2243576 1 11.88764987 -6.174358321 1.764216154 1.219990063 0.876372373 0.54450231 0.147076003 0.280062575 1.704416708 0.031215377 0.058046203 6.69E-07 6.174358321 -0.34361769 NFPNAIEHTLQWAR ddPTM_HeLa_CUDC101_4h_R1 2 NFPNAIEHTLQWAR 14 0 P22314;P22314-2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 ; ; 186.16 4.70E-11 28531000 7632.9 6645.5 5094.1 6759 6685.9 7162.6 5900.8 6240.1 6204.3 5826 FALSE FALSE TRUE 6738.183033 6850.239978 5369.502455 7034.661235 6192.694477 7025.985339 6128.395833 6950.447761 5948.556128 5791.346693 1.163491566 1.182840597 0.927159561 1.214684875 1.069301288 1.213186796 1.05819875 1.200143616 1.027145575 1 12.49968315 -9.385208299 1.032193073 0.997628493 1.12796058 0.221785494 0.085730062 0.601498374 1.113254486 0.058852691 0.014051363 4.12E-10 9.385208299 0.130332088 TAS(ph)GSSVTS(ph)LDGTR ddPTM_HeLa_CUDC101_4h_R1 1 TASGSSVTSLDGTR 14 0 Q92597;E5RJY1;E7ESM1;Q92597-3;Q92597-2 Q92597 NDRG1 Protein NDRG1 2 0 T(0.125)AS(0.758)GS(0.106)S(0.051)VT(0.016)S(0.944)LDGTR 109.99 0.034428 20053000 4734.6 5221 3745.9 3736.5 3826.7 3037.6 2882.5 2056.1 5393.8 5001.5 TRUE FALSE FALSE 4179.617365 5381.852822 3948.414685 3888.890621 3544.411965 2979.662841 2993.678991 2290.158113 5171.465281 4971.750856 0.840673132 1.082486427 0.794169861 0.782197406 0.712910214 0.599318616 0.602137774 0.460634127 1.040169838 1 12.27953829 -4.233796215 0.33962294 0.964235519 0.059748916 0.836704172 0.078870105 2.07341188 0.165971176 0.029008119 0.773520087 5.84E-05 4.233796215 -0.904486602 down ES(ph)PVSAPLEGLICR ddPTM_HeLa_CUDC101_4h_R1 2 ESPVSAPLEGLICR 14 0 A0A088AWL3;O75376;O75376-2 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 ES(1)PVSAPLEGLICR;ES(1)PVSAPLEGLICR ; 158.31 5.95E-05 19376400 2997.2 2267.2 2300 1898.35 1927.78 2231.5 1859.57 1595.97 2933.1 1923.94 TRUE FALSE FALSE 2645.872759 2337.049745 2424.344957 1975.772918 1785.57151 2188.937855 1931.294238 1777.648774 2812.196377 1912.496319 1.383465543 1.221989146 1.26763379 1.033085867 0.933633959 1.144544872 1.009828996 0.929491344 1.470432308 1 10.90124126 -6.174261482 6.453922278 1.195162157 1.011711091 0.430023359 0.136389666 0.272662903 16.89203914 0.023243704 0.038728523 6.69E-07 6.174261482 -0.183451066 TIGGGDDSFNT(ph)FFSETGAGK ddPTM_HeLa_CUDC101_4h_R1 4 TIGGGDDSFNTFFSETGAGK 20 0 Q9BQE3;F5H5D3;A0A1W2PQM2;P0DPH8;P0DPH7;F8VVB9;F8VQQ4;F8VS66;P0DPH7-2;F8VRZ4;F8VX09;F8VWV9;Q6PEY2;F8VRK0;F8W0F6;F8VXZ7;P68363;P68363-2;Q71U36-2;Q71U36 Q9BQE3;P68363 TUBA1C;TUBA1B;TUBA1A;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain 1 0 TIGGGDDS(0.005)FNT(0.723)FFS(0.271)ET(0.001)GAGK;TIGGGDDS(0.005)FNT(0.99)FFS(0.003)ET(0.002)GAGK;TIGGGDDS(0.001)FNT(0.499)FFS(0.499)ETGAGK;TIGGGDDS(0.082)FNT(0.911)FFS(0.007)ETGAGK ;;; 297.87 2.53E-123 57388900 11558.3 10701.4 8813.8 7862.6 8338.4 7473.7 6591.7 6042.1 10893.4 11149.8 TRUE FALSE FALSE 10203.4536 11031.09745 9290.300688 8183.270813 7723.292844 7331.151625 6845.944077 6729.908241 10444.36944 11083.48049 0.920600131 0.995273773 0.838211489 0.73833042 0.6968292 0.661448507 0.617670964 0.607201704 0.942336611 1 13.43612337 -6.174211606 0.944221491 0.969742744 0.617289787 0.954403811 0.031558285 0.084870403 0.14909676 0.006573626 0.015253719 6.70E-07 6.174211606 -0.352452957 NNTAAETEDDES(ph)DGEDRGGGTSGVR ddPTM_HeLa_CUDC101_4h_R1 1 NNTAAETEDDESDGEDRGGGTSGVR 25 1 A0A590UJS4;Q6KC79-2 A0A590UJS4 NIPBL Nipped-B-like protein 1 0 NNTAAETEDDES(1)DGEDRGGGTSGVR 131.69 3.27E-11 65465000 862.79 685.2 708.49 664.95 640.03 677.43 777.06 494.29 610.77 754.38 TRUE FALSE FALSE 761.6550641 706.3101998 746.7931125 692.0695352 592.816262 664.5091514 807.0314645 550.5579756 585.5938021 749.8929142 1.015685106 0.941881416 0.995866341 0.922891152 0.790534556 0.886138726 1.076195613 0.734182128 0.780903234 1 9.550540781 -6.174135389 3.618969848 1.001140693 0.884654799 0 0.109891944 0.224193716 5.575079846 0.012157579 0.020667655 6.70E-07 6.174135389 -0.116485894 NFSLLSFGEEAEEEEEEVNR ddPTM_HeLa_CUDC101_4h_R1 1 NFSLLSFGEEAEEEEEEVNR 20 0 D6REK3;Q6UX04-2;Q6UX04 D6REK3 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog 0 0 388.06 0 0 3138.6 2301.3 2735.6 2010.5 2739.7 2387 2232.4 2271 2520.4 2736.9 FALSE FALSE TRUE 2770.698066 2372.200325 2883.494811 2092.49688 2537.597789 2341.471952 2318.504416 2529.52146 2416.508045 2720.620797 1.01840656 0.871933467 1.059866488 0.769124783 0.932727483 0.860638849 0.852196829 0.929758922 0.888219353 1 11.40972017 -6.686500755 1.122334681 1.007628618 0.875131947 0.093609895 0.079698824 0.312066302 0.786969606 0.011780728 0.018735978 2.06E-07 6.686500755 -0.132496671 TRLPLELETS(ph)ST(ph)QKKS(ph)SSS(ph)S(ph)LLR ddPTM_HeLa_CUDC101_4h_R1 1 TRLPLELETSSTQKKSSSSSLLR 23 3 A0A087WWU1;Q96Q45-2;Q96Q45;Q96Q45-5;Q96Q45-3 A0A087WWU1 TMEM237 Transmembrane protein 237 5 0 T(0.015)RLPLELET(0.352)S(0.44)S(0.438)T(0.761)QKKS(0.437)S(0.437)S(0.437)S(0.751)S(0.933)LLR 48.968 0.0029899 0 2145.7 1579.7 2013.2 1573.3 1980.8 1586.3 1664.9 1750.2 1878.8 1892.5 TRUE FALSE FALSE 1894.184299 1628.368685 2122.039682 1637.465974 1834.68033 1556.04397 1729.115751 1949.435693 1801.355069 1881.243326 1.006878947 0.865581109 1.127998517 0.870416895 0.975248818 0.827135942 0.919134557 1.036248563 0.957534331 1 10.87747075 -6.173953823 24.86703537 0.999338365 0.922559797 0.141690889 0.079866944 86.85049159 24684.40529 0.010831684 0.017962315 6.70E-07 6.173953823 -0.076778568 LVTSGAESGNLNTSPSS(ph)NQTR ddPTM_HeLa_CUDC101_4h_R1 1 LVTSGAESGNLNTSPSSNQTR 21 0 Q8NHV4-2;Q8NHV4;Q8NHV4-3 Q8NHV4-2 NEDD1 Protein NEDD1 1 0 LVTSGAESGNLNT(0.058)S(0.199)PS(0.064)S(0.679)NQTR 330.05 1.08E-170 58660000 2069.1 1703.5 1520.3 1704.9 1648.2 1468.7 1479.9 1608.4 1842.5 1715.9 TRUE FALSE FALSE 1826.563235 1755.982816 1602.492017 1774.433191 1526.61557 1440.686995 1536.980239 1791.493755 1766.55137 1705.69375 1.07086236 1.029483057 0.939495743 1.04029999 0.895011528 0.844634035 0.90108804 1.050302116 1.035679101 1 10.73614293 -6.172900438 1.336495508 1.032324317 0.920765871 0.325139008 0.061581303 0.343252851 1.20616856 0.01057198 0.021204809 6.72E-07 6.172900438 -0.111558446 S(ph)CTPSPDQISHR ddPTM_HeLa_CUDC101_4h_R1 1 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 S(0.35)CT(0.35)PS(0.3)PDQISHR 142.39 0.0011736 8327100 2520.5 1919 1931 1527.6 1726.7 1345.8 1530.1 1526.8 2115.1 1589.3 TRUE FALSE FALSE 2225.050811 1978.122115 2035.395701 1589.902131 1599.324781 1320.131107 1589.11647 1700.60474 2027.914683 1579.846773 1.408396592 1.25209745 1.28835007 1.006364768 1.012329049 0.835607054 1.005867466 1.076436506 1.283614789 1 10.62556892 -6.172294491 5.774465626 1.209468603 0.978638476 0.554770616 0.113697517 0.219886027 11.41087222 0.02494071 0.041650133 6.73E-07 6.172294491 -0.230830128 YMNSDTT(ph)SPELR ddPTM_HeLa_CUDC101_4h_R1 1 YMNSDTTSPELR 12 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 YMNSDT(0.029)T(0.874)S(0.097)PELR 155.14 0.0011592 67301000 2751.5 2362.6 2122.3 2020.5 2111.4 2115.4 1891 1950.3 2210.1 2065.4 TRUE FALSE FALSE 2428.973341 2435.388906 2237.037958 2102.904723 1955.646229 2075.052269 1963.936503 2172.314269 2118.998743 2053.114909 1.183067412 1.186192207 1.089582443 1.024250866 0.952526437 1.010684916 0.956564338 1.058057812 1.032089696 1 11.00359866 -6.172251842 3.603029842 1.098061434 0.992776372 0.400317142 0.060552728 0.250561971 6.160386981 0.012249245 0.020840358 6.73E-07 6.172251842 -0.105285062 NFVVVMVTK ddPTM_HeLa_CUDC101_4h_R1 1 NFVVVMVTK 9 0 P54727;Q5W0S5;Q5W0S4;P54725-2;P54725-3;P54725;A0A494C0B4;K7ENJ0;K7ELW1 P54727;P54725-2 RAD23B;RAD23A UV excision repair protein RAD23 homolog B;UV excision repair protein RAD23 homolog A 0 0 103.55 0.029129 400440 195.84 0 54.919 86.324 73.593 0 151.39 0 180.8 132.98 FALSE FALSE TRUE 172.8839321 0 57.88808726 89.84466584 68.16419101 0 157.229163 0 173.3473475 132.189029 1.307853861 0 0.437918999 0.679668097 0.515656946 0 1.189426718 0 1.311359564 1 7.046458636 -7.275439411 24.97895294 1.145375447 0.434257033 0.511240286 0.357486913 471.0317005 840416.2556 0.056958183 0.065304555 5.30E-08 7.275439411 -0.711118414 MESAECLEMTYVPNIDRIS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 1 MESAECLEMTYVPNIDRISPEK 22 1 Q9ULD2-2;Q9ULD2;H0YC63;Q9ULD2-5 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 MESAECLEMT(0.011)Y(0.01)VPNIDRIS(0.98)PEK 46.57 0.037584 5738700 455.47 593.65 500.35 603.32 760.41 564.96 635.53 698.31 660.57 637.88 TRUE FALSE FALSE 402.080497 611.9396529 527.4004345 627.9259974 704.3160693 554.1843293 660.042605 777.8027877 633.341025 634.0858614 0.634110491 0.965073802 0.831749242 0.990285442 1.110758199 0.873989412 1.040935692 1.226652154 0.998825338 1 9.308534398 -6.17125298 2.918112957 0.834617836 1.049426602 0.238411444 0.13348413 0.272496665 4.512343176 0.024699458 0.042729711 6.74E-07 6.17125298 0.214808766 NFYQEHPDLAR ddPTM_HeLa_CUDC101_4h_R1 1 NFYQEHPDLAR 11 0 P17844-2;P17844;J3KTA4;J3QR02;J3KRX8;J3QRQ7;J3KTQ4;X6RLV5 P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 0 0 149.33 0.0040534 22252000 1300.2 1170.2 956.04 1073.3 1202.3 1065 1278.4 782.68 1200.2 1063 FALSE FALSE TRUE 1147.792527 1206.252475 1007.726414 1117.073813 1113.608724 1044.686899 1327.708316 871.7771275 1150.727248 1056.677229 1.086228127 1.141552446 0.953674771 1.05715708 1.053877848 0.988652799 1.256493734 0.825017426 1.089005438 1 10.04531904 -9.557217782 1.375715005 1.000452465 1.055780218 0 0.111437427 1.292390016 4.439569276 0.064679895 0.015809435 2.77E-10 9.557217782 0.055327753 NFYVEHPEVAR ddPTM_HeLa_CUDC101_4h_R1 2 NFYVEHPEVAR 11 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 0 ; ; 129.34 0.0020542 44685000 11032.8 10883.4 10484.7 10225 10793.2 10256.9 9641.2 10743.3 11379 11364.1 FALSE FALSE TRUE 9739.551909 11218.70465 11051.5346 10642.0197 9997.007139 10061.26672 10013.06431 11966.27385 10909.9528 11296.50583 0.862173849 0.993112811 0.978314424 0.942062958 0.884964545 0.890652993 0.886385973 1.05928984 0.965781187 1 13.46358897 NGAGNGAK(ac)GK(ac)GK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 NGAGNGAKGKGKR 13 3 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 0 3 ; NGAGNGAK(1)GK(1)GK(1)R;NGAGNGAK(1)GK(1)GK(1)R 290.51 8.82E-116 3676700 291.933 557.55 600.62 748.3 479.51 677.42 571.18 765.74 0 0 FALSE TRUE FALSE 257.7130563 574.7274546 633.091334 778.8189084 444.1375026 664.4993422 593.2106039 852.9087464 0 0 0 PAAS(ph)PAVGEK ddPTM_HeLa_CUDC101_4h_R1 2 PAASPAVGEK 10 0 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 PAAS(1)PAVGEK;PAAS(1)PAVGEK ; 145.23 0.00080754 39201000 9378 7594.9 7313.9 8000.3 6563.1 6080.3 6461.9 5494.7 7519.5 9694.9 TRUE FALSE FALSE 8278.725056 7828.889867 7709.311557 8326.586814 6078.953189 5964.328408 6711.137648 6120.194438 7209.543027 9637.234304 0.859035362 0.812358569 0.79995062 0.864001699 0.630777773 0.618883823 0.696375893 0.635057138 0.748092534 1 13.23440347 -6.169275015 0.215840385 1.048420658 0.479001012 0.385655253 0.092261812 1.269284347 0.13116826 0.086478218 0.227999987 6.77E-07 6.169275015 -0.569419646 NGDLDEVKDYVAK ddPTM_HeLa_CUDC101_4h_R1 1 NGDLDEVKDYVAK 13 1 C9JL85;P58546 C9JL85 MTPN Myotrophin 0 0 110.8 0.0055102 15560000 1761.4 1790.3 2301.4 2101.6 1714 1759.3 2065.4 1552.1 1694.7 2091.7 FALSE FALSE TRUE 1554.931362 1845.457021 2425.820645 2187.312332 1587.561635 1725.744284 2145.06317 1728.78479 1624.843749 2079.258475 0.747829758 0.887555368 1.166675848 1.051967496 0.763522984 0.829980642 1.031648155 0.831442945 0.781453469 1 11.0218534 -2.689157806 14.40679138 0.90438542 0.662280066 0 0.136571879 0 0 0.019526668 0 0.002045701 2.689157806 -0.242105353 NGFVVLK(ac)GRPCK ddPTM_HeLa_CUDC101_4h_R1 1 NGFVVLKGRPCK 12 2 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4 I3L397 EIF5A;EIF5A2 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2 0 1 NGFVVLK(1)GRPCK 113.38 0.0059676 4969200 2606.5 2935.9 2838.7 2849.7 3388.2 2996.7 2790.5 2497.4 3729 1335 FALSE TRUE FALSE 2300.970021 3026.351599 2992.168709 2965.923083 3138.259236 2939.54294 2898.13052 2781.693921 3575.289042 1327.059361 1.733886282 2.28049452 2.254736146 2.234958866 2.364822049 2.21508022 2.183874065 2.096133755 2.694144021 1 10.37401719 -8.073630769 0.659657743 1.062360576 2.265577436 0 0.520734627 0.115785945 0.112729816 0.058354527 0.037374073 8.44E-09 8.073630769 1.20321686 NGGHFVISIK ddPTM_HeLa_CUDC101_4h_R1 1 NGGHFVISIK 10 0 M0R0P1;M0R299;M0QXL5;M0R2Q4;P22087 M0R0P1 FBL rRNA 2-O-methyltransferase fibrillarin 0 0 93.096 0.010047 1833400 1394.7 1041.5 1088.5 1378.8 1395.4 1147.7 1137.3 1424.2 1130.2 1256.2 FALSE FALSE TRUE 1231.21538 1073.587381 1147.347603 1435.033424 1292.464122 1125.809535 1181.166042 1586.325171 1083.612678 1248.728067 0.98597558 0.859744735 0.918813017 1.1491961 1.035024483 0.901565012 0.945895326 1.27035278 0.867773142 1 10.28624362 -6.292327534 24.99699693 0.975976787 1.043810391 0.204427712 0.110221877 1323.876905 1071377.287 0.016069384 0.024548207 5.10E-07 6.292327534 0.067833604 NGHVGISFVPK ddPTM_HeLa_CUDC101_4h_R1 2 NGHVGISFVPK 11 0 P21333-2;P21333;Q60FE5 P21333-2 FLNA Filamin-A 0 0 ; ; 107.06 0.0038875 8816500 14092.6 8577.4 8487.2 7198 15989.8 12642.4 12542.6 12287.9 13389.4 12829.1 FALSE FALSE TRUE 12440.68679 8841.659527 8946.043704 7491.565552 14810.26431 12401.26728 13026.37228 13686.70487 12837.48326 12752.79194 0.975526524 0.693311674 0.701496876 0.587445132 1.161335053 0.972435474 1.021452584 1.073232036 1.006641002 1 13.63852551 S(ph)SPNPFITGLTR ddPTM_HeLa_CUDC101_4h_R1 3 SSPNPFITGLTR 12 0 A0A0D9SGJ6;J3KQV8;O43426 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 S(0.898)S(0.102)PNPFITGLTR;S(0.901)S(0.099)PNPFITGLTR;S(0.5)S(0.5)PNPFITGLTR ;; 153 0.00040391 39333200 3101.1 2502.28 2587.42 2364.11 2554.05 2119.54 2395.51 2455.49 2859.04 2685.46 TRUE FALSE FALSE 2737.593759 2579.372281 2727.303752 2460.528624 2365.64282 2079.113306 2487.905623 2735.013056 2741.189161 2669.486764 1.025513142 0.966242768 1.021658466 0.921723478 0.886178891 0.778843834 0.931979007 1.024546401 1.026859993 1 11.38234668 -6.166364224 3.986047769 1.008901393 0.898817831 0.418033402 0.058527149 0.169240045 4.880947678 0.008951123 0.015162819 6.82E-07 6.166364224 -0.110083563 KNSSTDQGS(ph)DEEGSLQK ddPTM_HeLa_CUDC101_4h_R1 1 KNSSTDQGSDEEGSLQK 17 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 KNSS(0.001)T(0.002)DQGS(0.997)DEEGSLQK 108.69 0.00064018 42017000 4786.9 2906 3104.7 3013 2559.7 2310.2 2144.7 2048.1 4033.6 3491.3 TRUE FALSE FALSE 4225.786838 2995.530416 3272.549473 3135.883163 2370.876031 2266.136784 2227.421797 2281.247425 3867.333301 3470.533592 1.217618768 0.863132523 0.94295283 0.903573782 0.683144527 0.652964947 0.641809606 0.657318929 1.11433392 1 11.76094178 -6.16409264 0.944854777 1.09516057 0.633459469 0.823992819 0.082125916 0.187216601 0.329182217 0.018932464 0.044243506 6.85E-07 6.16409264 -0.461701101 FS(ph)PVTPK ddPTM_HeLa_CUDC101_4h_R1 1 FSPVTPK 7 0 Q15942-2;Q15942;H0Y2Y8;H7C3D3 Q15942-2 ZYX Zyxin 1 0 FS(1)PVTPK 101.46 0.020216 562310000 14843 12437 12633 10984 11699 11380 10664 9176 11924 13529 TRUE FALSE FALSE 13103.12604 12820.16923 13315.97819 11431.975 10835.98808 11162.94546 11075.31405 10220.55875 11432.48767 13448.52891 0.97431668 0.953276698 0.99014385 0.850053941 0.805737799 0.830049557 0.823533498 0.759975966 0.850092062 1 13.71516075 -6.164010463 3.030579008 0.985117341 0.808629857 0.662631838 0.047915797 0.046119193 0.818068556 0.003493242 0.00603773 6.85E-07 6.164010463 -0.176487484 NGLSLAALK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 NGLSLAALKK 10 1 P16401 P16401 HIST1H1B Histone H1.5 0 1 NGLSLAALK(1)K 90.108 0.0093144 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 NGQHVASSPIPVVISQSEIGDASR ddPTM_HeLa_CUDC101_4h_R1 1 NGQHVASSPIPVVISQSEIGDASR 24 0 P21333-2;P21333;Q60FE5;H0Y5C6 P21333-2 FLNA Filamin-A 0 0 113.89 3.97E-07 16301000 824.39 1084.1 522.89 265.09 1726.3 679.21 666.76 721.46 545.76 1365.8 FALSE FALSE TRUE 727.7562539 1117.499836 551.1590151 275.901516 1598.954288 666.2552009 692.4771565 803.5880902 523.2635418 1357.676161 0.536030811 0.823097487 0.405957644 0.203215998 1.177714049 0.490732046 0.510045898 0.591884953 0.385411158 1 10.40692369 -9.32607994 0.74570445 1.039978624 0.587062086 0 0.310937536 0.885919031 0.755856753 0.253955113 0.04805576 4.72E-10 9.32607994 -0.452916538 EELSSGDSLS(ph)PDPWKR ddPTM_HeLa_CUDC101_4h_R1 1 EELSSGDSLSPDPWKR 16 1 A8MQ02;J3KN01;P55196-3;P55196;P55196-5;Q5TIG5;P55196-2;P55196-6;P55196-1 A8MQ02 MLLT4 Afadin 1 0 EELS(0.064)S(0.056)GDS(0.056)LS(0.824)PDPWKR 59.372 0.032643 6893200 3229 2704.4 2304.6 2028.3 2319.3 2045.5 1872.4 1425.1 2669.1 3136.8 TRUE FALSE FALSE 2850.501515 2787.719358 2429.193647 2111.022841 2148.20986 2006.485496 1944.619095 1587.327624 2559.078568 3118.142174 0.914166627 0.894032152 0.779051599 0.677013017 0.688939035 0.643487495 0.623646706 0.509061978 0.820706185 1 11.60647099 -6.160332063 0.443155482 0.993203424 0.510805245 0.819236631 0.061642001 0.181045671 0.064728539 0.011068119 0.036540466 6.91E-07 6.160332063 -0.482398179 S(ph)PEPDGPAPAFLR ddPTM_HeLa_CUDC101_4h_R1 2 SPEPDGPAPAFLR 13 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 S(1)PEPDGPAPAFLR;S(1)PEPDGPAPAFLR ; 174.21 3.05E-07 24275000 1816.45 1661.74 1204.74 1442.65 1222.12 1369.82 1312.77 878.5 1577.76 1506.43 TRUE FALSE FALSE 1603.528485 1712.93624 1269.871889 1501.487503 1131.966642 1343.692966 1363.403979 978.504889 1512.724065 1497.469687 1.070825338 1.143887088 0.848011749 1.00268307 0.75591957 0.897308959 0.910471838 0.653438862 1.010186769 1 10.54831108 -6.156134594 1.245969117 1.039497791 0.816182835 0.516230142 0.097660022 0.263714111 0.80702345 0.015510141 0.032197665 6.98E-07 6.156134594 -0.223314955 RGSGDT(ph)SSLIDPDTSLSELRDIYDLK ddPTM_HeLa_CUDC101_4h_R1 1 RGSGDTSSLIDPDTSLSELRDIYDLK 26 2 C9JSU1;Q9Y608-4;Q9Y608 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 RGS(0.097)GDT(0.279)S(0.279)S(0.279)LIDPDT(0.029)S(0.016)LS(0.016)ELRDIY(0.004)DLK 62.193 0.0095832 75035000 1212.4 1489.5 1479.2 1334.5 1876.8 1847.9 1415 1948.4 1797.6 1293.2 TRUE FALSE FALSE 1070.28431 1535.38973 1559.170026 1388.926678 1738.352203 1812.654386 1469.577024 2170.19798 1723.502167 1285.507989 0.832576942 1.194383654 1.212882409 1.080449667 1.352268689 1.41006855 1.14318778 1.68820264 1.340716808 1 10.32812286 -6.155707191 0.663350645 0.92242452 1.440675057 0.222767139 0.199423886 0.381084722 0.319071658 0.032863152 0.093732059 6.99E-07 6.155707191 0.518250538 NGSEADIDEGLYSR ddPTM_HeLa_CUDC101_4h_R1 4 NGSEADIDEGLYSR 14 0 P22314;P22314-2;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 ;;; ;;; 215.09 2.15E-23 33381100 6604.28 6374.81 6029.18 6553.02 7428.73 6194.18 5606.17 5452.44 6976.69 6346.31 FALSE FALSE TRUE 5830.13631 6571.21034 6355.135708 6820.28048 6880.727388 6076.036337 5822.401855 6073.12373 6689.107885 6308.561866 0.924162501 1.041633653 1.00738264 1.08111494 1.090696665 0.963141278 0.922936476 0.962679587 1.060322151 1 12.62309544 -5.005220176 24.60046857 0.990395885 0.942865723 0.087800167 0.05600232 363.1743876 1711528.134 0.008915975 0.025656898 9.88E-06 5.005220176 -0.047530162 NGSGTLTGSHDYPAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 NGSGTLTGSHDYPAKK 16 1 Q7Z7F0 Q7Z7F0 KIAA0907 UPF0469 protein KIAA0907 0 1 NGSGTLTGSHDYPAK(1)K 50.252 0.037959 0 639.5 714.61 436.48 724.93 868.9 807.26 681.73 647.31 412.33 327.85 FALSE TRUE FALSE 564.5387794 736.6262871 460.0774291 754.4957788 804.8029781 791.8628605 708.0245545 720.9971539 395.3335829 325.8999336 1.732245764 2.260283636 1.411713786 2.315114859 2.469478803 2.429773003 2.172521322 2.21232679 1.213052051 1 8.348285248 -8.097381749 0.327948409 0.811531923 2.412715929 0.733253643 0.264497742 0.543153662 0.152354004 0.348244833 0.180862722 7.99E-09 8.097381749 1.601184005 WAHDKFS(ph)GEEGEIEDDESGTENR ddPTM_HeLa_CUDC101_4h_R1 5 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(0.999)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(1)GEEGEIEDDESGTENR;WAHDKFS(0.98)GEEGEIEDDES(0.017)GT(0.003)ENR ;;;; 94.707 7.76E-05 267691000 13522.3 9867.9 9315.9 9598.8 9087.5 9248 8712.2 5821.13 12059.1 12574.7 TRUE FALSE FALSE 11937.23649 10171.9183 9819.545733 9990.280554 8417.13323 9071.609808 9048.232472 6483.783909 11562.01879 12499.90513 0.954986168 0.813759641 0.785569621 0.79922851 0.673375769 0.725734293 0.723864092 0.51870665 0.924968524 1 13.60962952 -6.15385658 0.381114337 1.013990157 0.558222236 0.816286314 0.058435444 0.410827153 0.108708234 0.02215567 0.074050388 7.02E-07 6.15385658 -0.455767921 GVMDY(ph)YLK ddPTM_HeLa_CUDC101_4h_R1 1 GVMDYYLK 8 0 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 GVMDY(1)YLK 108.24 0.03611 487620000 508.86 1032 892.45 1725.4 2487.4 2486.3 2490.6 950.49 2390.7 1368.2 TRUE FALSE FALSE 449.2122022 1063.794697 940.6985465 1795.76927 2303.909458 2438.87797 2586.663276 1058.68994 2292.154334 1360.061886 0.33028806 0.782166391 0.691658634 1.320358499 1.693973989 1.793211027 1.901871748 0.778413064 1.685330909 1 10.40945658 -6.152453968 3.020741581 0.682530807 1.582490364 0.25264213 0.452987747 0.144915622 2.541501128 0.055796946 0.096850493 7.04E-07 6.152453968 0.899959557 SNSFS(ph)DER ddPTM_HeLa_CUDC101_4h_R1 3 SNSFSDER 8 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 SNS(0.072)FS(0.928)DER;SNS(0.072)FS(0.928)DER;S(0.002)NS(0.32)FS(0.678)DER ;; 169.21 1.94E-05 4554877900 24970.8 20084 20242.3 19283.4 17588.9 18587.7 17005.5 14940.8 21449.7 22666.5 TRUE FALSE FALSE 22043.76068 20702.76423 21336.65997 20069.8604 16291.40189 18233.17059 17661.40783 16641.60028 20565.53429 22531.67865 0.978345245 0.918829198 0.946962732 0.890739688 0.723044303 0.809223799 0.783847848 0.738586793 0.912738665 1 14.45966718 -6.152428338 1.07426806 0.98849526 0.760282861 0.798100238 0.042433695 0.108697319 0.247602546 0.005920654 0.013107213 7.04E-07 6.152428338 -0.2282124 EESPMDVDQPS(ph)PSAQDTQSIASDGTPQGEK ddPTM_HeLa_CUDC101_4h_R1 1 EESPMDVDQPSPSAQDTQSIASDGTPQGEK 30 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 EESPMDVDQPS(0.447)PS(0.447)AQDT(0.101)QS(0.006)IASDGTPQGEK 87.439 2.79E-07 3142800 2004.4 1609.3 1379.3 1389.2 1201.9 1342 1204 1174.7 1812.3 1403.1 TRUE FALSE FALSE 1769.44727 1658.880626 1453.86913 1445.857581 1113.238232 1316.403586 1250.438683 1308.4231 1737.596227 1394.754299 1.268644429 1.189371223 1.042383688 1.03663963 0.798160818 0.94382472 0.896529722 0.938102934 1.245808117 1 10.44579528 -6.151709448 2.154557869 1.132863031 0.899802304 0.6518318 0.086941425 0.20821105 1.890121871 0.017503021 0.031683982 7.05E-07 6.151709448 -0.233060727 T(ph)ALINSTGEEVAMR ddPTM_HeLa_CUDC101_4h_R1 1 TALINSTGEEVAMR 14 0 P02545;P02545-6;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 T(0.991)ALINS(0.007)T(0.002)GEEVAMR 156.96 0.00032567 11943000 1674.6 1095.5 1326.3 1182.9 1059 1109.8 965.66 890.67 1152.9 1403.1 TRUE FALSE FALSE 1478.305927 1129.251057 1398.00379 1231.143775 980.8796798 1088.632414 1002.90583 992.0602726 1105.376974 1394.754299 1.059904191 0.809641567 1.002329795 0.88269581 0.703263421 0.780519132 0.719055557 0.711279595 0.792524515 1 10.44579528 -6.148532118 0.796230813 1.025188361 0.707163222 0.366665788 0.100148547 0.216772764 0.26721057 0.013191238 0.034226623 7.10E-07 6.148532118 -0.318025139 GGIDNPAITS(ph)DQELDDK ddPTM_HeLa_CUDC101_4h_R1 1 GGIDNPAITSDQELDDK 17 0 H0YK04;Q13017-2;Q13017;A0A0A0MSK6 H0YK04 ARHGAP5 Rho GTPase-activating protein 5 1 0 GGIDNPAIT(0.228)S(0.772)DQELDDK 199.61 1.34E-16 13220000 3903.6 3581.9 3417.5 3256 3698.6 3343.8 3158.2 3206.7 3612.8 3549.2 TRUE FALSE FALSE 3446.025925 3692.254093 3602.260387 3388.793754 3425.761647 3280.022586 3280.012832 3571.737766 3463.878855 3528.089201 0.976740023 1.046530823 1.021023047 0.960518162 0.970996325 0.929688112 0.929685347 1.01237173 0.981800249 1 11.78467132 -6.147731035 7.530432721 0.996125214 0.957465162 0.346520514 0.029155922 0.278101975 16.70645277 0.004516596 0.007512871 7.12E-07 6.147731035 -0.038660052 NGTGGLFQGK(ac)TPLR ddPTM_HeLa_CUDC101_4h_R1 2 NGTGGLFQGKTPLR 14 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 0 1 ; NGTGGLFQGK(1)TPLR;NGTGGLFQGK(1)TPLR 89.992 0.026858 1163780 0 0 188.38 167.05 203.53 63.395 127.03 159.95 0 62.762 FALSE TRUE FALSE 0 0 198.5643926 173.8630211 188.5159974 62.185846 131.9295897 178.1580615 0 62.38868883 0 0 3.1826986 2.786771517 3.02163743 0.996748724 2.114639562 2.855614772 0 1 5.963212585 -6.76609642 24.99956236 0.474999931 2.445187728 0.732929364 0.657349905 54.65539459 293397.0604 0.11548946 0.154606396 1.71E-07 6.76609642 1.970187797 TPS(ph)DDEEDNLFAPPK ddPTM_HeLa_CUDC101_4h_R1 4 TPSDDEEDNLFAPPK 15 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 0 T(0.26)PS(0.74)DDEEDNLFAPPK;T(0.125)PS(0.875)DDEEDNLFAPPK;T(0.008)PS(0.992)DDEEDNLFAPPK;T(0.169)PS(0.831)DDEEDNLFAPPK ;;; 210.02 1.59E-23 119419200 11973.5 11492.6 10765.1 10301.3 11075.6 10494.2 10836.2 9658.4 12292.5 11561.9 TRUE FALSE FALSE 10569.98448 11846.67338 11347.09387 10721.43154 10258.57505 10294.04062 11254.15586 10757.87322 11785.79795 11493.1293 0.919678549 1.030761342 0.987293675 0.932855731 0.89258328 0.895669086 0.979207278 0.936026467 1.025464661 1 13.48848404 -6.147167614 6.180699495 0.96901485 0.925881494 0.335156205 0.03963405 0.314740354 15.12775555 0.006486327 0.010827864 7.13E-07 6.147167614 -0.043133357 ELPSLSPAPDTGLSPS(ph)KR ddPTM_HeLa_CUDC101_4h_R1 1 ELPSLSPAPDTGLSPSKR 18 1 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;A0A0A0MSL0 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 ELPSLSPAPDT(0.003)GLS(0.36)PS(0.637)KR 128.75 3.66E-05 34939000 4885.6 3519.9 3557.9 3547.5 4043.7 3273 3030.5 3761.7 3864.4 3566.8 TRUE FALSE FALSE 4312.917374 3628.343947 3750.250836 3692.182384 3745.404307 3210.572978 3147.3874 4189.916723 3705.107796 3545.584515 1.216419283 1.023341548 1.057724282 1.041346601 1.056357363 0.90551303 0.88769211 1.181728063 1.044992097 1 11.79180777 -6.14643971 1.260911019 1.098184439 0.990161227 0.059457612 0.094505115 0.640583572 2.00765975 0.018322775 0.038079843 7.14E-07 6.14643971 -0.108023212 S(ph)PYQEFTDHLVK ddPTM_HeLa_CUDC101_4h_R1 2 SPYQEFTDHLVK 12 0 E9PQD7;P15880;H0YEN5 E9PQD7 RPS2 40S ribosomal protein S2 1 0 S(0.998)PY(0.002)QEFTDHLVK;S(0.997)PY(0.003)QEFTDHLVK ; 184.31 7.77E-11 29646000 5879.8 5000.3 4279.2 4525.2 4576.6 5197.3 4249.3 3559.7 5010.2 4305.1 TRUE FALSE FALSE 5190.578757 5154.353316 4510.546496 4709.757216 4238.993336 5098.170162 4413.196924 3964.921859 4803.677435 4279.493074 1.212895702 1.204430812 1.053990839 1.100540913 0.990536324 1.191302351 1.031242918 0.926493346 1.122487489 1 12.0632242 -6.146161356 2.109137764 1.110204034 1.046440378 0.162446755 0.086175853 0.739391518 6.435119277 0.016804989 0.030596835 7.14E-07 6.146161356 -0.063763656 SLS(ph)PIIGK ddPTM_HeLa_CUDC101_4h_R1 1 SLSPIIGK 8 0 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0;Q9H4G0-4;H7C2K6;X6RC15 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 S(0.008)LS(0.992)PIIGK 107.79 0.012619 482240000 11749 10255 8254.7 8827.9 8833.9 8526.6 7797.4 6859.2 9046.8 9659.4 TRUE FALSE FALSE 10371.80003 10570.94439 8700.974051 9187.939919 8182.240797 8363.969311 8098.14833 7640.023602 8673.887075 9601.945459 1.080176936 1.100916938 0.906167827 0.956883161 0.852144061 0.871070279 0.843386204 0.795674547 0.903346839 1 13.22911103 -6.145090275 1.204044825 1.041932864 0.835718772 0.578368315 0.06286684 0.15964222 0.456565045 0.008459858 0.017914615 7.16E-07 6.145090275 -0.206214093 NGYGFVEFDDLRDADDAVYELNGK ddPTM_HeLa_CUDC101_4h_R1 2 NGYGFVEFDDLRDADDAVYELNGK 24 1 Q08170;A0A0D9SEM4 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 0 0 ; ; 120.33 2.37E-08 12995600 1347.79 1552.92 1769.05 1417.39 1841.23 1694.19 1508.6 1502.62 1884.5 1645.21 FALSE FALSE TRUE 1189.804099 1600.763625 1864.690194 1475.197291 1705.406131 1661.876148 1566.787207 1673.672187 1806.820112 1635.424218 0.727520167 0.978806359 1.140187466 0.9020273 1.042791291 1.016174354 0.958031066 1.023387185 1.104802101 1 10.67544919 -7.020831835 24.73621365 0.870372872 1.011908911 0 0.111670496 684.2270965 812466.6767 0.018537361 0.022845863 9.53E-08 7.020831835 0.141536039 DGASSS(ph)PESASR ddPTM_HeLa_CUDC101_4h_R1 1 DGASSSPESASR 12 0 A0A075B6E4;A0A0A6YYI5;G5E9M7;Q14135-2;Q14135;Q14135-4;G5E9M9;Q14135-5;Q14135-6 A0A075B6E4 VGLL4 Transcription cofactor vestigial-like protein 4 1 0 DGASS(0.101)S(0.899)PESASR 136.01 0.0013742 25809000 2905.1 1441.7 2914.6 2797.8 1907 1724.7 1697 984.97 3159.4 3523.7 TRUE FALSE FALSE 2564.568582 1486.117068 3072.172092 2911.906377 1766.324409 1691.804221 1762.453858 1097.095003 3029.168195 3502.740876 0.73216052 0.424272626 0.87707661 0.831322236 0.50426922 0.482994398 0.503164214 0.313210438 0.864799396 1 11.77426855 -6.144451044 0.130301129 1.242240519 1.04E-13 0.580927813 0.143997347 6.319207192 0.334481731 1.042557426 2.056365126 7.17E-07 6.144451044 -1.242240519 NGYGFVEFEDSRDADDAVYELNGK ddPTM_HeLa_CUDC101_4h_R1 3 NGYGFVEFEDSRDADDAVYELNGK 24 1 Q13247-3;Q13247;A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80;Q13247-2 Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 0 0 ;; ;; 118.36 2.64E-08 24353000 3145.74 2937.13 2731.82 2448.22 3688.8 3227.72 3074.16 3052.09 3461.4 2785.92 FALSE FALSE TRUE 2777.001126 3027.619494 2879.510453 2548.068994 3416.684573 3166.156619 3192.731381 3399.527589 3318.719627 2769.349224 1.002763069 1.093260275 1.039778742 0.920096668 1.233749988 1.14328543 1.152881462 1.227554676 1.198375271 1 11.43533128 -5.754090639 24.99994506 1.007128776 1.183470127 0.42562768 0.077282846 59.91403084 203821.8941 0.00681347 0.013410446 1.76E-06 5.754090639 0.176341351 SLDSEPSVPSAAKPPS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 3 SLDSEPSVPSAAKPPSPEK 19 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 SLDSEPSVPSAAKPPS(1)PEK;SLDSEPSVPSAAKPPS(1)PEK;SLDSEPSVPS(0.001)AAKPPS(0.999)PEK ;; 93.551 0.00053902 499853900 7467.1 6217.4 6431.7 5897.4 5880 5953.9 5200 6124.1 6683 7039.5 TRUE FALSE FALSE 6591.817857 6408.950725 6779.417157 6137.921463 5446.244115 5840.339277 5400.565742 6821.24279 6407.523911 6997.628741 0.942007372 0.915874643 0.968816353 0.877143057 0.778298523 0.83461691 0.77177083 0.974793468 0.915670743 1 12.77265041 -6.144229647 3.464787866 0.966701379 0.833881649 0.419846575 0.058306527 0.139392144 3.100963187 0.008402998 0.014447597 7.17E-07 6.144229647 -0.13281973 ESS(ph)PIPS(ph)PTSDRK ddPTM_HeLa_CUDC101_4h_R1 1 ESSPIPSPTSDRK 13 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 0 ES(0.361)S(0.639)PIPS(0.97)PT(0.025)S(0.005)DRK 86.539 0.011846 96057000 7014.7 6063.7 5920.1 5807.7 6408.7 5994.2 5749.8 5716.1 6771 6168.9 TRUE FALSE FALSE 6192.4475 6250.51541 6240.158513 6044.563109 5935.942969 5879.870622 5971.571712 6366.797719 6491.896514 6132.207108 1.009823607 1.01929294 1.017604005 0.985707593 0.967994535 0.958850626 0.973804636 1.038255494 1.058655782 1 12.58219071 -6.14390054 5.984631257 1.006940207 0.981534478 0.241750782 0.026413008 0.252507808 11.56578419 0.003102435 0.005183843 7.18E-07 6.14390054 -0.025405729 NHDDWSHDYDNRR ddPTM_HeLa_CUDC101_4h_R1 2 NHDDWSHDYDNRR 13 1 G3V1T9;J3KPD3;Q9Y580 G3V1T9 RBM7 RNA-binding protein 7 0 0 ; ; 95.477 0.0038689 20779000 3828.1 3523.25 4228.53 4167.67 4453.02 3984.58 4132.88 3479.93 4988 4956.3 FALSE FALSE TRUE 3379.375921 3631.797156 4457.137122 4337.645597 4124.529586 3908.580775 4292.286566 3876.071165 4782.392529 4926.819707 0.685914266 0.737148378 0.904668201 0.880414924 0.83715862 0.79332734 0.87120837 0.786728842 0.970685516 1 12.26644096 -9.574860464 1.378878689 0.999211306 0.799714904 0.528557969 0.064542226 0.292909799 1.004731134 0.053451341 0.012721319 2.66E-10 9.574860464 -0.199496402 NHDEESLECLCR ddPTM_HeLa_CUDC101_4h_R1 1 NHDEESLECLCR 12 0 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 Q04637-9;A0A0A0MSA7 EIF4G1;EIF4G3 Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3 0 0 141.37 0.0011149 16160000 2095.2 2173.5 2244.6 2141.9 2382.1 2515.6 2111.8 2166.2 2617.4 1368.3 FALSE FALSE TRUE 1849.603832 2240.462959 2365.949866 2229.25594 2206.377229 2467.619121 2193.252833 2412.791452 2509.509664 1360.161291 1.359841546 1.647203882 1.739462725 1.638964405 1.622143818 1.814210666 1.612494671 1.773900984 1.845008883 1 10.40956202 -7.836446847 0.613572099 1.031000354 1.726517029 0 0.264475415 0.127062522 0.109917117 0.033563376 0.025400366 1.46E-08 7.836446847 0.695516675 ALPAT(ph)PQLPSR ddPTM_HeLa_CUDC101_4h_R1 1 ALPATPQLPSR 11 0 O43516-2;O43516;O43516-3;O43516-4 O43516-2 WIPF1 WAS/WASL-interacting protein family member 1 1 0 ALPAT(1)PQLPSR 110.51 0.033043 17377000 4397.6 3405.7 3697 3230.7 3199 2894.5 2914.3 4075.8 3143.3 3646.8 TRUE FALSE FALSE 3882.119994 3510.62558 3896.871003 3362.46191 2963.016143 2839.292235 3026.705527 4539.772597 3013.731844 3625.108671 1.07089755 0.968419404 1.074966672 0.927547893 0.817359261 0.78322955 0.834928219 1.252313519 0.831349379 1 11.82380853 -6.143031138 5.532858446 1.031069753 0.902253189 0.002182675 0.140318289 0.288054877 12.05449583 0.018277579 0.030612916 7.19E-07 6.143031138 -0.128816564 EAFEQPQTSST(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 EAFEQPQTSSTPPR 14 0 P52564;A0A0A0MRF7;K7EIW3 P52564 MAP2K6 Dual specificity mitogen-activated protein kinase kinase 6 1 0 EAFEQPQT(0.002)S(0.005)S(0.092)T(0.901)PPR 102.15 0.03164 6029100 2821.3 2447.4 2463.4 2261.4 2267.5 2295.9 2222.5 2087.1 2473.5 2694.1 TRUE FALSE FALSE 2490.591491 2522.801493 2596.578855 2353.629667 2100.231042 2252.109533 2308.222569 2324.687028 2371.541283 2678.075373 0.929993052 0.942020347 0.969568998 0.878851167 0.784231491 0.840943296 0.861896044 0.868043913 0.885539409 1 11.38698085 -6.140485847 3.75397518 0.964056124 0.839720032 0.632030244 0.037083993 0.09128319 2.302975797 0.005307259 0.009076679 7.24E-07 6.140485847 -0.124336092 GSDDAPYS(ph)PTAR ddPTM_HeLa_CUDC101_4h_R1 1 GSDDAPYSPTAR 12 0 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 GSDDAPYS(0.885)PT(0.115)AR 194.06 4.69E-16 17785000 2839.4 2215.8 2766.9 2439.4 2432.2 2528.1 2130.3 1593.5 2959.8 3106.8 TRUE FALSE FALSE 2506.569836 2284.066172 2916.486983 2538.889276 2252.781452 2479.880705 2212.466385 1774.897599 2837.795791 3088.320615 0.811628762 0.739581946 0.944360171 0.822093815 0.729451936 0.802986805 0.716397894 0.574712868 0.918879917 1 11.59260682 -6.139860215 0.051148454 1.566898646 2.73E-14 0.62471579 0.072901068 38.97732696 0.74591807 9.765030536 13.00149603 7.25E-07 6.139860215 -1.566898646 RYEDDGIS(ph)DDEIEGK ddPTM_HeLa_CUDC101_4h_R1 2 RYEDDGISDDEIEGK 15 1 I3VM54;Q9Y2K7-3;Q9Y2K7 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 RYEDDGIS(1)DDEIEGK;RYEDDGIS(1)DDEIEGK ; 242.09 9.02E-44 56014000 9871.4 7266.5 7708.2 7200.3 6940.7 6874.7 6547.5 5860.1 7295.8 8097.5 TRUE FALSE FALSE 8714.289456 7490.372252 8124.928608 7493.959356 6428.698389 6743.576552 6800.039268 6527.190097 6995.064036 8049.33571 1.082609767 0.930557815 1.009391197 0.931003455 0.798661979 0.837780507 0.844795088 0.810897984 0.869023766 1 12.97465401 -6.139451411 1.310794074 1.033892609 0.820994357 0.468963681 0.065980004 0.132476474 0.448478905 0.007641592 0.015719362 7.25E-07 6.139451411 -0.212898251 MEIGDTLSTAEESS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 1 MEIGDTLSTAEESSPPK 17 0 Q9BYW2;C9JG86;Q9BYW2-3;Q9BYW2-2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 MEIGDTLSTAEES(0.012)S(0.988)PPK 162.7 3.06E-05 21791000 3004.2 2542.7 2413.4 2043 2421.3 2341.8 1755.6 1890.6 2978.7 2705.9 TRUE FALSE FALSE 2652.05223 2621.037573 2543.875704 2126.322371 2242.685523 2297.134067 1823.31408 2105.818262 2855.916725 2689.805186 0.985964427 0.97443398 0.945747193 0.790511663 0.833772473 0.854015034 0.677861017 0.782888766 1.061755974 1 11.39328597 -6.13886995 0.831756603 0.997733361 0.752524111 0.81631699 0.049216404 0.168119428 0.226847571 0.008121805 0.020728809 7.26E-07 6.13886995 -0.24520925 RALS(ph)SDSILSPAPDAR ddPTM_HeLa_CUDC101_4h_R1 4 RALSSDSILSPAPDAR 16 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 RALS(0.991)S(0.004)DS(0.004)ILSPAPDAR;RALS(0.68)S(0.208)DS(0.112)ILSPAPDAR;RALS(0.679)S(0.238)DS(0.083)ILSPAPDAR;RALS(0.996)S(0.003)DS(0.001)ILSPAPDAR ;;; 269.59 2.52E-85 514650000 7161.1 7605.7 6715.43 6585.4 8700.1 8563.7 7299.3 7417.1 7384.3 6896.1 TRUE FALSE FALSE 6321.686714 7840.022602 7078.486459 6853.981077 8058.310956 8400.361691 7580.836446 8261.432683 7079.916029 6855.081691 0.922189844 1.143680405 1.032589658 0.999839446 1.175523695 1.225421092 1.105871059 1.20515452 1.0327982 1 12.74295814 -6.137874539 0.760825492 0.967792743 1.187790117 0.486968926 0.06895495 0.342074612 0.382563951 0.013815916 0.037117408 7.28E-07 6.137874539 0.219997374 STS(ph)PIIGS(ph)PPVR ddPTM_HeLa_CUDC101_4h_R1 1 STSPIIGSPPVR 12 0 Q86TB9-2;Q86TB9-4;Q86TB9 Q86TB9-2 PATL1 Protein PAT1 homolog 1 2 0 S(0.156)T(0.026)S(0.818)PIIGS(1)PPVR 137.81 0.012683 24691000 2998.1 2593.4 2699 2459.5 2688.4 2281.2 2802.4 2298.7 2659.5 2783.6 TRUE FALSE FALSE 2646.667263 2673.29958 2844.916104 2559.809041 2490.082088 2237.689911 2910.489507 2560.374716 2549.874284 2767.043023 0.956496607 0.966121436 1.028143068 0.925106339 0.899907254 0.808693574 1.051841074 0.925310772 0.921515951 1 11.43412936 -6.135367389 9.148970454 0.981022332 0.921466552 0.151415925 0.060943967 0.424834043 29.67622399 0.008641894 0.01434936 7.32E-07 6.135367389 -0.05955578 NHSGNDERDEEDEER ddPTM_HeLa_CUDC101_4h_R1 2 NHSGNDERDEEDEER 15 1 A0A0D9SGE8;Q8IWS0-3;Q8IWS0-5;Q8IWS0 A0A0D9SGE8;Q8IWS0-5 PHF6 PHD finger protein 6 0 0 ; ; 106.32 0.0018408 11888800 595.85 379.7 747.08 632.13 587.24 473.26 674.03 147.41 686.93 938.51 FALSE FALSE TRUE 526.0053662 391.3981069 787.4694046 657.9109937 543.9204751 464.233354 700.0275629 164.1905585 658.6144546 932.9277008 0.563822219 0.419537448 0.844084063 0.705211125 0.583025324 0.497609143 0.750355641 0.175994944 0.705965161 1 9.86562147 -13.52287875 0.224432754 3.341735732 0.517517549 0.183932377 0.198509628 30.77801093 0.39291709 31.60679095 0.129550541 3.00E-14 13.52287875 -2.824218183 LQSVQATGPSS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 2 LQSVQATGPSSPGR 14 0 A0A096LNU0;D6REY2;P23508;P23508-2 A0A096LNU0 MCC Colorectal mutant cancer protein 1 0 LQSVQATGPS(0.005)S(0.995)PGR;LQSVQATGPS(0.009)S(0.991)PGR ; 225.6 6.38E-33 167754000 8619.2 7725.2 7506.1 6821.2 7123.1 6904.5 6816.3 6397.3 7552.9 7815 TRUE FALSE FALSE 7608.870442 7963.204255 7911.902471 7099.39802 6597.643104 6772.808166 7079.206974 7125.542773 7241.566265 7768.516032 0.979449667 1.025061186 1.018457378 0.913867976 0.849279718 0.87182779 0.911268889 0.917233451 0.932168542 1 12.92342332 -6.134140205 4.637377237 0.994986448 0.887406128 0.732663719 0.029916454 0.069570946 2.337356378 0.003688384 0.006229562 7.34E-07 6.134140205 -0.107580319 (ac)MTDS(ph)KYFT(ph)T(ph)TK ddPTM_HeLa_CUDC101_4h_R1 1 MTDSKYFTTTK 11 1 C9J1E7;Q10567-4;Q10567-3;Q10567-2;Q10567 C9J1E7 AP1B1 AP-1 complex subunit beta-1 3 0 MT(0.304)DS(0.526)KY(0.278)FT(0.893)T(0.698)T(0.301)K 62.528 0.0032014 0 3799 3029.4 3075.2 3331.4 3002.6 2571 2407.3 2578.4 3271.2 4048.7 TRUE FALSE FALSE 3353.686979 3122.732223 3241.454614 3467.268892 2781.10418 2521.962459 2500.150367 2871.914634 3136.359751 4024.618152 0.83329321 0.775907702 0.805406747 0.861514996 0.691023117 0.626633972 0.621214305 0.713586861 0.779293745 1 11.97463619 -6.133805491 0.085255885 1.342799996 0.173968361 0.375861216 0.086094745 8.648019851 0.282042114 1.472378559 2.353326047 7.35E-07 6.133805491 -1.168831635 S(ph)SPAAFINPPIGTVTPALK ddPTM_HeLa_CUDC101_4h_R1 2 SSPAAFINPPIGTVTPALK 19 0 F6VRR5;Q9BY77;F8WCX5;Q9BY77-2;Q6R954;F8WEE2;Q8WUT1 F6VRR5 POLDIP3;PDIP46 Polymerase delta-interacting protein 3 1 0 S(0.5)S(0.5)PAAFINPPIGTVTPALK;S(0.5)S(0.5)PAAFINPPIGTVTPALK ; 200.67 3.80E-17 67689000 5958.8 5109.2 4778.8 4248.9 5172.1 5019.4 4466.5 3404.9 5140.1 6194.2 TRUE FALSE FALSE 5260.318497 5266.608396 5037.156383 4422.188507 4790.564487 4923.663308 4638.774401 3792.500053 4928.222902 6157.356623 0.854314411 0.855335937 0.818071243 0.718195937 0.778022905 0.799639132 0.753371079 0.615929901 0.800379644 1 12.58809541 -6.133776944 0.051950065 1.586476826 2.54E-13 0.387994916 0.074036793 20.56325578 0.398262044 5.180138658 6.937171131 7.35E-07 6.133776944 -1.586476826 QGGSASQSQPS(ph)PCDSK ddPTM_HeLa_CUDC101_4h_R1 1 QGGSASQSQPSPCDSK 16 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 QGGSASQSQPS(0.999)PCDS(0.001)K 225.86 9.31E-33 3018100 1132.8 892.47 902.09 805.21 840.03 768.43 815.04 753.58 1139.8 872.57 TRUE FALSE FALSE 1000.014901 919.9659429 950.8597141 838.0499442 778.0626605 753.773478 846.4763658 839.3645011 1092.816962 867.3799148 1.152914524 1.060626292 1.096243639 0.966185555 0.897026375 0.869023441 0.975900354 0.967701104 1.259905772 1 9.760520226 -6.13355527 4.026094202 1.074545392 0.927099544 0.569382102 0.074349386 0.138394765 3.856954081 0.009754783 0.016622778 7.35E-07 6.13355527 -0.147445848 NIDDGTSDRPYSHALVAGIDR ddPTM_HeLa_CUDC101_4h_R1 3 NIDDGTSDRPYSHALVAGIDR 21 1 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 0 ;; ;; 126.09 3.58E-07 102389000 10099.9 7386.9 7299.7 6679.5 8424.9 8608.5 8290.7 7906.7 8580.8 9767.3 FALSE FALSE TRUE 8916.005032 7614.481633 7694.343862 6951.918881 7803.411912 8444.307205 8610.475076 8806.766768 8227.095792 9709.203665 0.91830446 0.784253982 0.792479397 0.716013292 0.803712867 0.869721915 0.886836385 0.907053459 0.847350213 1 13.24513726 -7.617720873 1.757994006 0.972677379 0.821611384 0.223893583 0.068144764 0.183561265 1.164376732 0.012677265 0.013075406 2.41E-08 7.617720873 -0.151065995 NIDDGTSDRPYSHALVAGIDRYPR ddPTM_HeLa_CUDC101_4h_R1 2 NIDDGTSDRPYSHALVAGIDRYPR 24 2 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 0 ; ; 74.703 0.00015873 86772000 4995.9 4442.1 4469 5395.1 6609.3 5680.3 5849.1 6603.6 5799.8 3432.1 FALSE FALSE TRUE 4410.288175 4578.955836 4710.607658 5615.135498 6121.745107 5571.957742 6074.701746 7355.327131 5560.729789 3411.685717 1.292700601 1.342138818 1.380727315 1.645853682 1.794346143 1.63319784 1.780557253 2.155921659 1.629906812 1 11.73626904 -1 0.138531627 0.819065655 5.174149881 0.514071638 0.213795919 13.02857663 0.119617011 0.260196078 11.25762409 0.1 1 4.355084226 NIEDYIHR ddPTM_HeLa_CUDC101_4h_R1 2 NIEDYIHR 8 0 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 0 ; ; 123.21 0.0063386 16718200 12609.9 10730.9 10762.8 10873.2 11334.6 11129.9 10843.3 10929.5 10660.7 11284 FALSE FALSE TRUE 11131.78664 11061.50631 11344.66952 11316.65609 10498.46914 10917.6157 11261.52971 12173.6701 10221.26143 11216.88227 0.992413611 0.986148026 1.011392404 1.00889497 0.935952513 0.973319987 1.003980379 1.08529891 0.911239076 1 13.45338411 -4.273275975 3.922084163 0.991924543 1.093047316 0.450910638 0.032812265 0.111729231 3.467111348 0.0029312 0.031596083 5.33E-05 4.273275975 0.101122773 NIELICQENEGENDPVLQR ddPTM_HeLa_CUDC101_4h_R1 2 NIELICQENEGENDPVLQR 19 0 Q15691 Q15691 MAPRE1 Microtubule-associated protein RP/EB family member 1 0 0 ; ; 263.99 3.30E-70 20246100 2822.1 2952.6 2397.45 2326.28 2933.4 2498.2 2484.07 2788.7 2831.3 2667.73 FALSE FALSE TRUE 2491.297716 3043.566106 2527.063399 2421.155753 2717.008926 2450.550997 2579.881412 3106.154336 2714.592616 2651.862223 0.939452168 1.147708987 0.952939175 0.91300209 1.024566398 0.924086846 0.972856504 1.171310601 1.023655223 1 11.37279011 -4.260474223 23.76786369 0.977965373 1.171310717 0.403614336 0.065434273 28.0592277 690760.6713 0.008507856 0.069099811 5.49E-05 4.260474223 0.193345345 NIGLGFK(ac)TPK ddPTM_HeLa_CUDC101_4h_R1 2 NIGLGFKTPK 10 1 P62280;M0QZC5 P62280 RPS11 40S ribosomal protein S11 0 1 ; NIGLGFK(1)TPK;NIGLGFK(1)TPK 150.1 0.0004108 39539000 7586.4 7297.6 6761 6779.3 7731.9 7934.8 7117.4 6551.4 6459.3 6966 FALSE TRUE FALSE 6697.133692 7522.430406 7126.520111 7055.789157 7161.533141 7783.45691 7391.920502 7297.184894 6193.04492 6924.565922 0.967155742 1.086339634 1.029164888 1.018950391 1.034221238 1.124035354 1.067492257 1.053811167 0.894358576 1 12.75750792 -6.672852894 0.760624208 0.984993097 1.072178158 0.468421487 0.044539349 0.391504293 0.456286744 0.008034145 0.014171964 2.12E-07 6.672852894 0.087185061 APS(ph)EIDPR ddPTM_HeLa_CUDC101_4h_R1 2 APSEIDPR 8 0 O95801 O95801 TTC4 Tetratricopeptide repeat protein 4 1 0 APS(1)EIDPR;APS(1)EIDPR ; 104.01 0.015168 104506000 15000.2 12632.9 13421 11885.7 13246.3 11208.7 11008.2 14115 12117.6 13224.4 TRUE FALSE FALSE 13241.89929 13022.10468 14146.57986 12370.45022 12269.14684 10994.91272 11432.78996 15721.79455 11618.1074 13145.74068 1.007314811 0.990594976 1.076134103 0.941023448 0.933317273 0.836385944 0.869695382 1.195961105 0.883792529 1 13.68230781 -6.133414528 18.55280725 1.00739402 0.942674491 0.012154555 0.100602073 4.460845083 636.0086445 0.013151024 0.021808672 7.36E-07 6.133414528 -0.064719529 QDIMPEVDKQSGS(ph)PESR ddPTM_HeLa_CUDC101_4h_R1 1 QDIMPEVDKQSGSPESR 17 1 Q8NI08-2;Q8NI08;Q8NI08-7 Q8NI08-2 NCOA7 Nuclear receptor coactivator 7 1 0 QDIMPEVDKQS(0.001)GS(0.894)PES(0.105)R 165.17 8.69E-05 11100000 1945.7 1482.8 1621.1 1333.9 1140.5 1284.3 1269.8 1467.7 1583.6 1569.7 TRUE FALSE FALSE 1717.627995 1528.48331 1708.74157 1388.302208 1056.367587 1259.804117 1318.776611 1634.777035 1518.323338 1560.363355 1.100787192 0.979568833 1.095092092 0.889730077 0.677001023 0.807378688 0.845172765 1.047689969 0.973057547 1 10.60766631 -6.133206443 4.976161745 1.045528315 0.835618973 0.465182971 0.094226883 0.135791404 4.962416319 0.014130604 0.023783946 7.36E-07 6.133206443 -0.209909341 GSALSQLSFEVGAPMS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 GSALSQLSFEVGAPMSPK 18 0 Q96JM2;Q96JM2-3 Q96JM2 ZNF462 Zinc finger protein 462 1 0 GSALSQLSFEVGAPMS(0.999)PK 79.676 0.0031546 0 1026.8 765.43 791.37 946.5 1232.1 1114.9 869.64 669.01 975.02 953.78 TRUE FALSE FALSE 906.4400605 789.011991 834.153856 985.1023611 1141.210438 1093.63514 903.1823061 745.1673942 934.8292629 948.1068741 0.956052619 0.832197311 0.879809944 1.039020376 1.203672781 1.153493525 0.952616557 0.785952949 0.98599566 1 9.888905884 -6.133184795 15.54751922 0.958573207 1.03974552 0.11901852 0.116816923 2.455144484 292.6763834 0.018684889 0.030986606 7.36E-07 6.133184795 0.081172313 ASEAAS(ph)PLPDSPGDK ddPTM_HeLa_CUDC101_4h_R1 2 ASEAASPLPDSPGDK 15 0 Q68CZ2;Q68CZ2-2 Q68CZ2 TNS3 Tensin-3 1 0 ASEAAS(0.833)PLPDS(0.167)PGDK;ASEAAS(0.998)PLPDS(0.002)PGDK ; 168.45 8.71E-07 30340000 10477.6 8084.3 7372.7 7665.1 7400.3 7626.9 7194.4 5993.2 8508.6 7553.4 TRUE FALSE FALSE 9249.431611 8333.367701 7771.290463 7977.715909 6854.394612 7481.42959 7471.890418 6675.441663 8157.871907 7508.472041 1.231866026 1.109861987 1.035002917 1.062495254 0.912888078 0.996398408 0.995127954 0.889054607 1.08648895 1 12.87430364 -6.132962193 1.576307475 1.110702669 0.955133849 0.513481707 0.065502311 0.32133407 1.568248328 0.015124923 0.029470214 7.36E-07 6.132962193 -0.15556882 NIIFFVRPR ddPTM_HeLa_CUDC101_4h_R1 1 NIIFFVRPR 9 1 F5H6Y0;H3BMM5;A0A2R8YF87;Q96AX1 F5H6Y0 VPS33A Vacuolar protein sorting-associated protein 33A 0 0 120.87 0.0045585 397780 119.18 133.69 57.616 0 196.39 0 0 0 0 0 FALSE FALSE TRUE 105.2099011 137.8088304 60.73089524 0 181.902701 0 0 0 0 0 0 LASTS(ph)DIEEKENR ddPTM_HeLa_CUDC101_4h_R1 2 LASTSDIEEKENR 13 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIS4;H0YHI8;A0A3B3ISH4;F8VZN8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 LAST(0.032)S(0.968)DIEEKENR;LAST(0.225)S(0.775)DIEEKENR ; 214.48 2.26E-23 20812300 8050.3 6742.3 6466.4 6310.6 6196.1 6100 5747.2 5200.9 7494 7230.3 TRUE FALSE FALSE 7106.656037 6950.022271 6815.993144 6567.973545 5739.026047 5983.652663 5968.871429 5792.949433 7185.094148 7187.293854 0.988780504 0.966987355 0.948339289 0.913831225 0.798496091 0.832532075 0.830475496 0.80599869 0.999693945 1 12.81123296 -6.131566713 1.307465254 0.993585979 0.814979682 0.949775592 0.017736594 0.058535663 0.197227678 0.002823465 0.005839447 7.39E-07 6.131566713 -0.178606298 EGEETEGS(ph)EEDDKENDKTEEMPNDSVLENK ddPTM_HeLa_CUDC101_4h_R1 2 EGEETEGSEEDDKENDKTEEMPNDSVLENK 30 2 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 EGEET(0.192)EGS(0.804)EEDDKENDKT(0.003)EEMPNDSVLENK;EGEET(0.142)EGS(0.69)EEDDKENDKT(0.165)EEMPNDS(0.003)VLENK ; 77.51 7.00E-06 51506000 4370.2 3335.7 3670.5 3329.7 2983.2 3249.6 2769.8 2606.8 4234.6 4026.5 TRUE FALSE FALSE 3857.931781 3438.468963 3868.938333 3465.499558 2763.135279 3187.619294 2876.632114 2903.547575 4060.047996 4002.550199 0.963868431 0.859069541 0.966618316 0.865822884 0.690343691 0.796397081 0.718699822 0.7254244 1.014365291 1 11.96670378 -6.130104857 0.683301048 0.98781933 0.708168374 0.820026199 0.049568961 0.211646779 0.187897634 0.009921206 0.028514429 7.41E-07 6.130104857 -0.279650955 SQGS(ph)GNEAEPLGK ddPTM_HeLa_CUDC101_4h_R1 2 SQGSGNEAEPLGK 13 0 B8ZZZ7;Q9NUQ6-2;Q9NUQ6;Q9NUQ6-4;Q9NUQ6-3 B8ZZZ7 SPATS2L SPATS2-like protein 1 0 SQGS(1)GNEAEPLGK;S(0.014)QGS(0.986)GNEAEPLGK ; 116.87 0.0027886 40027000 5281.7 5321.3 5221.9 4519.1 4275.4 4601 4868 4037.6 5689.9 5820.3 TRUE FALSE FALSE 4662.587133 5485.242946 5504.211709 4703.408431 3960.01226 4513.243591 5055.760391 4497.224063 5455.359914 5785.680597 0.80588395 0.948072202 0.951350773 0.812939524 0.684450549 0.780071336 0.873840217 0.777302512 0.942907204 1 12.49827096 -6.129779521 5.29475211 0.912319912 0.781798413 0.55490492 0.06395691 0.198469115 7.780114245 0.01283596 0.021552153 7.42E-07 6.129779521 -0.130521499 ADAASSLTVDVTPPT(ph)AK ddPTM_HeLa_CUDC101_4h_R1 1 ADAASSLTVDVTPPTAK 17 0 Q9H8Y8-2;Q9H8Y8;Q9H8Y8-3 Q9H8Y8-2 GORASP2 Golgi reassembly-stacking protein 2 1 0 ADAAS(0.001)SLT(0.005)VDVT(0.333)PPT(0.661)AK 226.74 2.38E-32 70252000 2522.5 2144.9 2044 2234.2 2717.5 2251.9 2285.2 2075.3 2258.9 2227.7 TRUE FALSE FALSE 2226.816374 2210.981827 2154.504823 2325.320333 2517.035439 2208.948759 2373.340929 2311.543763 2165.787186 2214.449541 1.005584608 0.998434051 0.972930194 1.050066976 1.136641586 0.99751596 1.071752092 1.04384576 0.978025078 1 11.11273241 -6.126097192 6.233438101 1.000407123 1.062491374 0.50169101 0.033862943 0.155580251 7.294107833 0.004624689 0.007723895 7.48E-07 6.126097192 0.062084251 VSS(ph)PSPELGTTPASIFR ddPTM_HeLa_CUDC101_4h_R1 1 VSSPSPELGTTPASIFR 17 0 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 VS(0.026)S(0.973)PSPELGTTPASIFR 233.47 2.21E-43 34644000 2780.5 2620.2 2185.6 2029.9 2138.6 2020.6 1974.9 1553.3 2024.3 2321.9 TRUE FALSE FALSE 2454.574005 2700.925256 2303.760147 2112.688096 1980.839739 1982.060422 2051.072555 1730.121393 1940.857497 2308.089236 1.063465817 1.170199668 0.998124384 0.915340734 0.858216272 0.858745143 0.888645258 0.749590339 0.840893613 1 11.17248329 -6.125283596 2.231779208 1.042343999 0.843611068 0.481323459 0.084451839 0.127893947 1.247523321 0.009321146 0.016967667 7.49E-07 6.125283596 -0.198732931 NINDAWVCTNDMFR ddPTM_HeLa_CUDC101_4h_R1 1 NINDAWVCTNDMFR 14 0 P61970 P61970 NUTF2 Nuclear transport factor 2 0 0 138.25 0.002828 32538000 2517.6 1567 1543.4 1923.2 1899 1918.7 1495.2 1452.8 1607.1 824.04 FALSE FALSE TRUE 2222.490744 1615.277413 1626.840873 2001.636409 1758.914553 1882.103994 1552.870365 1618.18088 1540.854658 819.1385734 2.713204843 1.971922047 1.986038657 2.443587048 2.147273502 2.297662514 1.895735856 1.975466584 1.881067145 1 9.677963723 -9.471637822 1.181105171 0.992699245 2.223310194 0.306002523 0.356625093 0.198147011 0.489808965 0.200280294 0.048061001 3.38E-10 9.471637822 1.230610949 ANVVTTPS(ph)TNR ddPTM_HeLa_CUDC101_4h_R1 1 ANVVTTPSTNR 11 0 Q8IWZ3;Q8IWZ3-4;Q8IWZ3-6;H0Y785;H0Y472;H0Y4P6;E9PDP5 Q8IWZ3 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 0 ANVVT(0.045)T(0.045)PS(0.731)T(0.18)NR 90.697 0.023942 13850000 6049.4 4489.4 4299.2 4176.4 4295.7 3640.5 3646.5 2923.2 4047 5177.4 TRUE FALSE FALSE 5340.298502 4627.713093 4531.627756 4346.731644 3978.814769 3571.063528 3787.146726 3255.965272 3880.180947 5146.604595 1.037635281 0.899177896 0.880508241 0.844582397 0.773095095 0.693867862 0.735853446 0.632643369 0.753930261 1 12.32940523 -6.124083109 0.69795635 1.020863596 0.666166868 0.469734751 0.090569909 0.124544707 0.115600968 0.007505248 0.021435744 7.51E-07 6.124083109 -0.354696727 RGSFDATGS(ph)GFSMTFSSSSYSSSGYGR ddPTM_HeLa_CUDC101_4h_R1 1 RGSFDATGSGFSMTFSSSSYSSSGYGR 27 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 RGS(0.023)FDAT(0.175)GS(0.386)GFS(0.386)MT(0.03)FSSSSYSSSGYGR 46.958 0.025023 27307000 487.34 561.68 440.58 611.14 791.04 642.17 437.11 776.44 375.74 633.42 TRUE FALSE FALSE 430.214744 578.984695 464.3990875 636.0649308 732.6865552 629.9216772 453.9694791 864.8267911 360.2518382 629.6523897 0.683257542 0.919530688 0.73754836 1.010184256 1.163636583 1.000427676 0.720984287 1.373498783 0.572144002 1 9.298411774 -6.123790591 6.631597047 0.845465615 1.04146565 0.306398286 0.19280152 0.302999588 15.21843328 0.027664619 0.046136784 7.52E-07 6.123790591 0.196000035 LMTPWEESNVMQDKDAPS(ph)PKPR ddPTM_HeLa_CUDC101_4h_R1 2 LMTPWEESNVMQDKDAPSPKPR 22 2 S4R313;Q9NP74-2;Q9NP74;Q9NP74-3 S4R313 PALMD Palmdelphin 1 0 LMTPWEES(0.002)NVMQDKDAPS(0.998)PKPR;LMTPWEESNVMQDKDAPS(1)PKPR ; 90.601 0.00036997 84359000 6775.9 6647.6 6049 5707.3 6070.9 5717.4 5921.5 4754.4 6411.2 6747 TRUE FALSE FALSE 5981.639274 6852.404677 6376.027237 5940.068363 5623.061802 5608.350121 6149.894239 5295.621678 6146.927622 6706.868544 0.891867678 1.021699565 0.95067127 0.885669418 0.838403461 0.836209937 0.916954641 0.789581851 0.916512316 1 12.71142361 -6.123181089 3.146033021 0.954447202 0.850430776 0.572967581 0.045292691 0.175209529 3.291402325 0.007931144 0.01384465 7.53E-07 6.123181089 -0.104016425 GNVFSS(ph)PT(ph)AAGTPNKETAGLK ddPTM_HeLa_CUDC101_4h_R1 1 GNVFSSPTAAGTPNKETAGLK 21 1 E9PGZ1;Q05682-5;Q05682-4;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682 E9PGZ1;E7EX44;Q05682 CALD1 Caldesmon 2 0 GNVFS(0.438)S(0.527)PT(0.922)AAGT(0.113)PNKET(0.001)AGLK 92.518 0.00076168 219280000 8474.5 6802.6 6690 6938.8 7375.8 7023.5 5625.7 2237.4 6866.5 6342.2 TRUE FALSE FALSE 7481.131957 7012.180043 7051.681636 7221.794256 6831.701929 6889.538439 5842.685133 2492.096572 6583.459964 6304.476312 1.186638126 1.112254166 1.118519808 1.145502639 1.083627186 1.092801067 0.926751858 0.395290021 1.044251677 1 12.62216082 -4.231782174 2.098090404 1.098480508 0.164664171 0.949328112 0.048808692 0.163041691 0.734360879 0.009929389 0.294682209 5.86E-05 4.231782174 -0.933816337 down AYTTGS(ph)PGSR ddPTM_HeLa_CUDC101_4h_R1 2 AYTTGSPGSR 10 0 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4;H3BMG9;H3BSV5 A0A0A0MTL6 FAM65A Protein FAM65A 1 0 AYT(0.003)T(0.277)GS(0.61)PGS(0.111)R;AYT(0.002)T(0.363)GS(0.565)PGS(0.071)R ; 95.483 0.021155 30940000 3846.3 3082.4 3025.5 3510.9 3084.7 3173.2 2939.5 1347.23 3352.7 3108.7 TRUE FALSE FALSE 3395.442545 3177.36509 3189.067682 3654.089677 2857.147827 3112.676497 3052.8775 1500.593218 3214.500287 3090.209314 1.09877429 1.028203842 1.031990832 1.182473194 0.924580679 1.00727044 0.987919325 0.485595979 1.040220891 1 11.59348885 -4.231288659 3.019182633 1.043781827 0.372108532 0.870795842 0.063537482 0.11294785 1.408613968 0.009118091 0.1876642 5.87E-05 4.231288659 -0.671673295 down NIPQSTEILK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 NIPQSTEILKK 11 1 O95456;O95456-2 O95456 PSMG1 Proteasome assembly chaperone 1 0 1 NIPQSTEILK(1)K 100.55 0.011307 607730 122.41 0 84.025 0 208.49 234.43 232.28 155.47 270.61 135.55 FALSE TRUE FALSE 108.0612854 0 88.56764566 0 193.1101081 229.9586383 241.2391174 173.1680764 259.4553413 134.7437426 0.80197628 0 0.657304332 0 1.433165685 1.706636865 1.790354883 1.285165998 1.925546495 1 7.074074466 -5.547058929 24.64613049 0.749958959 1.606386022 0.375827572 0.522280692 117.1346648 119391.4447 0.058470368 0.116945245 2.84E-06 5.547058929 0.856427064 AATTATPAATTS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 AATTATPAATTSPK 14 0 A0A087X055;Q92766;Q92766-2;Q92766-5;Q92766-3 A0A087X055 RREB1 Ras-responsive element-binding protein 1 1 0 AATTATPAATT(0.075)S(0.925)PK;AATTATPAAT(0.001)T(0.409)S(0.59)PK ; 236.42 1.69E-43 54771000 15256.2 11440.1 12299.5 10752.5 8311.3 8923.4 8626.7 8005.1 11240 14022.6 TRUE FALSE FALSE 13467.89136 11792.55592 12964.44817 11191.03343 7698.191957 8753.201012 8959.434709 8916.368226 10776.68244 13939.19295 0.966188746 0.845999906 0.930071649 0.802846583 0.55226956 0.627956083 0.642751323 0.639661726 0.773120975 1 13.76685941 -6.121322979 1.62593123 0.973974443 0.615246595 0.696674656 0.082426282 0.079783901 0.414479899 0.008803085 0.017110287 7.56E-07 6.121322979 -0.358727848 IQEQES(ph)SGEEDSDLS(ph)PEER ddPTM_HeLa_CUDC101_4h_R1 1 IQEQESSGEEDSDLSPEER 19 0 P41236;Q6NXS1;E7EMN6 P41236 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3 2 0 IQEQES(0.587)S(0.42)GEEDS(0.007)DLS(0.986)PEER 114.53 0.0017126 33954000 2172.7 1899.9 1989.5 1843.4 1984.9 1797.5 1907.4 1839.3 2054.6 2139.1 TRUE FALSE FALSE 1918.0194 1958.433667 2097.058388 1918.58182 1838.477881 1763.215682 1980.969057 2048.678477 1969.908518 2126.376538 0.902013056 0.921019223 0.986212155 0.902277553 0.864605985 0.829211408 0.931617247 0.963459877 0.926415657 1 11.05418138 -6.120408856 6.849305612 0.951727829 0.893494678 0.235693272 0.043472691 0.295667674 15.49993721 0.007876473 0.013127708 7.58E-07 6.120408856 -0.058233151 NISFNDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 NISFNDKK 8 1 E7EQR4;P15311;A0A2R8Y7M3;A0A2R8Y5S7;P35241-4;P35241;P35241-5;P26038 E7EQR4;A0A2R8Y7M3;P26038 EZR;RDX;MSN Ezrin;Radixin;Moesin 0 1 NISFNDK(1)K 110.76 0.0049278 14458000 18588 9297.3 8910.5 9280.9 16442 16103 18788 15132 13250 11873 FALSE TRUE FALSE 16409.14282 9583.738793 9392.228583 9659.415217 15229.10642 15795.8621 19512.65945 16854.56571 12703.82939 11802.37887 1.390325035 0.812017552 0.795791144 0.818429515 1.290342107 1.338362569 1.653281908 1.42806513 1.076378714 1 13.52679006 -5.216466502 2.345931777 1.103420409 1.528371205 0.501948735 0.20209449 0.271554891 2.88982575 0.03660754 0.110963778 6.07E-06 5.216466502 0.424950796 NISLMMNFQPPSK ddPTM_HeLa_CUDC101_4h_R1 1 NISLMMNFQPPSK 13 0 H3BN68;F5GYU8;Q6UXY8-4;Q6UXY8-3;Q6UXY8-2;Q6UXY8 H3BN68 TMC5 Transmembrane channel-like protein;Transmembrane channel-like protein 5 0 0 108.57 0.027868 28609000 1022.4 892.37 843.8 701.67 911.51 792.11 556.92 656.28 780.44 671.15 FALSE FALSE TRUE 902.5558219 919.862862 889.4183804 730.2871355 844.2697233 777.0018215 578.400591 730.9882624 748.2699329 667.15797 1.352836753 1.378778196 1.333145103 1.094624015 1.265471989 1.164644442 0.866961975 1.095674931 1.121578347 1 9.381884594 -4.888974319 6.892478609 1.199995764 0.983204504 0.348489439 0.126853133 0.236083724 13.37953148 0.022803886 0.069529048 1.29E-05 4.888974319 -0.216791261 NITLNFGPQHPAAHGVLR ddPTM_HeLa_CUDC101_4h_R1 1 NITLNFGPQHPAAHGVLR 18 0 O75306-2;O75306 O75306-2 NDUFS2 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial" 0 0 59.261 0.017674 986610 424.48 261.19 98.254 359.82 267.1 254.4 321.05 295.66 335 324.52 FALSE FALSE TRUE 374.7230979 269.2369543 103.5659084 374.4950149 247.3965651 249.5477439 333.433006 329.3167393 321.1911582 322.5897406 1.161608851 0.834611026 0.321045264 1.160901813 0.766907728 0.773576194 1.033613175 1.020853108 0.995664517 1 8.333556747 -7.248198119 23.47771118 1.076315288 0.838098785 0.158322232 0.217259806 403.3298123 715132.3371 0.035632628 0.043479466 5.65E-08 7.248198119 -0.238216503 LS(ph)PEPGREGVR ddPTM_HeLa_CUDC101_4h_R1 2 LSPEPGREGVR 11 1 Q9NWK9-2;Q9NWK9 Q9NWK9-2 ZNHIT6 Box C/D snoRNA protein 1 1 0 LS(1)PEPGREGVR;LS(1)PEPGREGVR ; 130.56 0.0097866 1147460000 9035 8310.2 7664.1 7434.9 8206.5 6974.5 7393.9 7120 8014.7 8408 TRUE FALSE FALSE 7975.930996 8566.227412 8078.444429 7738.127358 7601.122845 6841.473033 7679.0852 7930.51202 7684.330674 8357.988842 0.954288304 1.024914914 0.966553627 0.925836048 0.909444005 0.818554937 0.918771889 0.948854105 0.919399489 1 13.02894012 -6.119931281 2.305785432 0.981695473 0.895097286 0.425354413 0.040496312 0.180166224 1.875659563 0.005819305 0.010564435 7.59E-07 6.119931281 -0.086598187 NNNPS(ph)PPPDSDLER ddPTM_HeLa_CUDC101_4h_R1 1 NNNPSPPPDSDLER 14 0 E5RHZ7;E7EQM5;A0A2R8YGM9;A6NCB9;A0A2R8YET7;F8WB53;A0A2R8Y6K4;Q99502-3;Q99502-2;Q99502 E5RHZ7 EYA1 Eyes absent homolog;Eyes absent homolog 1 1 0 NNNPS(0.986)PPPDS(0.014)DLER 128.74 0.00012347 0 1691.4 1341.4 1371.4 1307.3 1439.5 1308.7 1433.9 1018.7 1662.7 1422.8 TRUE FALSE FALSE 1493.136656 1382.726944 1445.542032 1360.617345 1333.310953 1283.738728 1489.206003 1134.66469 1594.162802 1414.337122 1.055714817 0.977650181 1.022063276 0.962017699 0.942710851 0.907661057 1.052935668 0.802259003 1.127144849 1 10.46591033 -6.119436735 1.172851159 1.024707007 0.929049372 0.370040762 0.067890721 0.393380414 1.068172583 0.009442857 0.020536971 7.60E-07 6.119436735 -0.095657635 HPKGEEGS(ph)DDDETENGPKPK ddPTM_HeLa_CUDC101_4h_R1 2 HPKGEEGSDDDETENGPKPK 20 2 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 HPKGEEGS(0.933)DDDET(0.067)ENGPKPK;HPKGEEGS(0.999)DDDET(0.001)ENGPKPK ; 50.255 0.024944 81987000 12415.2 12386.5 12424.3 12890.6 15281.3 13113 13424.8 13705.6 12432.1 14434.9 TRUE FALSE FALSE 10959.90908 12768.11338 13095.99524 13416.33439 14154.02894 12862.89137 13942.59903 15265.7901 11919.64358 14349.04057 0.763807798 0.889823492 0.912673929 0.934998707 0.986409431 0.896428671 0.971674654 1.063889256 0.830692722 1 13.80866666 -6.117275873 1.635188531 0.886133081 0.97550868 0.331141028 0.067464076 0.555797841 2.921180515 0.015321052 0.029794316 7.63E-07 6.117275873 0.089375599 NIYSEELR ddPTM_HeLa_CUDC101_4h_R1 2 NIYSEELR 8 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 176.44 4.04E-05 155768000 9757.6 8094.6 7511.4 8565 8830.3 7754.2 7878.1 7830.8 8043 7394.8 FALSE FALSE TRUE 8613.82892 8343.985032 7917.489005 8914.317721 8178.906361 7606.301554 8181.960956 8722.226619 7711.464136 7350.815401 1.171819513 1.135110131 1.077089897 1.212697808 1.112652939 1.034756165 1.113068484 1.186565863 1.049062412 1 12.84368858 -9.406348485 1.085571406 0.998610779 1.130872336 0.395884511 0.051222246 0.358935367 0.743920494 0.036662318 0.008923929 3.92E-10 9.406348485 0.132261557 NK(ac)LDHYAIIK ddPTM_HeLa_CUDC101_4h_R1 2 NKLDHYAIIK 10 1 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750 H7BY10 RPL23A 60S ribosomal protein L23a 0 1 ; NK(1)LDHYAIIK;NK(1)LDHYAIIK 75.509 0.01519 0 14378.7 6463.4 5458.7 6334 11758.1 11249.9 12083.6 9197.7 9535.5 5981.6 FALSE TRUE FALSE 12693.25058 6662.529693 5753.813834 6592.327898 10890.72839 11035.3269 12549.6685 10244.72899 9142.442654 5946.021177 2.134746952 1.12050218 0.967674628 1.108695664 1.831599327 1.85591786 2.110599361 1.722955349 1.537573174 1 12.53770889 -9.649119228 1.488986268 1.000522098 1.669054568 0.020886342 0.428897245 0.497574529 1.986162457 0.326277152 0.07397463 2.24E-10 9.649119228 0.66853247 NK(ac)WFFQK ddPTM_HeLa_CUDC101_4h_R1 2 NKWFFQK 7 1 P61353;K7ELC7 P61353 RPL27 60S ribosomal protein L27 0 1 ; NK(1)WFFQK;NK(1)WFFQK 108.09 0.0093151 819300 418.72 349.51 269.76 482.9 409.45 344.89 520.65 487.18 406.65 0 FALSE TRUE FALSE 369.6382763 360.2779888 284.3440416 502.5947493 379.2456892 338.3117979 540.7316449 542.638602 389.8877149 0 0 TVSQQS(ph)FDGVSLDSSGPEDR ddPTM_HeLa_CUDC101_4h_R1 2 TVSQQSFDGVSLDSSGPEDR 20 0 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 TVSQQS(0.993)FDGVS(0.007)LDSSGPEDR;TVS(0.008)QQS(0.992)FDGVSLDSSGPEDR ; 271.92 7.23E-87 24943000 1898.43 1502.14 1651.52 1354.18 1089.92 1065.57 1185.41 1552.01 1760.58 1799.29 TRUE FALSE FALSE 1675.898913 1548.419153 1740.806167 1409.409314 1009.518773 1045.246028 1231.131661 1728.684545 1688.008147 1788.587743 0.936995638 0.865721662 0.973285305 0.788001214 0.564422281 0.584397401 0.68832612 0.966508102 0.943765915 1 10.80460518 -6.116096315 3.713874993 0.960142496 0.690025895 0.528573906 0.107778671 0.131421754 3.263474314 0.016556333 0.028505574 7.65E-07 6.116096315 -0.2701166 S(ph)VSSFPVPQDNVDTHPGSGK ddPTM_HeLa_CUDC101_4h_R1 1 SVSSFPVPQDNVDTHPGSGK 20 0 C9JAY7;E7EVC7;Q676U5-4;Q676U5-5;Q676U5-3;Q676U5-2;Q676U5 C9JAY7 ATG16L1 Autophagy-related protein 16-1 1 0 S(0.874)VS(0.063)S(0.063)FPVPQDNVDTHPGSGK 108.49 0.00011221 16319000 1903.2 1168.3 1251.7 1636.8 1783.8 1787.7 1668.1 1716.1 1253 1352.6 TRUE FALSE FALSE 1680.109781 1204.293938 1319.370688 1703.555779 1652.212628 1753.602601 1732.439176 1911.453887 1201.35081 1344.554675 1.249565981 0.895682385 0.981269645 1.267003723 1.228817733 1.30422558 1.28848548 1.421626002 0.893493461 1 10.39291271 -6.115618647 5.720555751 1.09154059 1.30176318 0.563363074 0.119657195 0.186374882 8.145686167 0.019291525 0.032323794 7.66E-07 6.115618647 0.21022259 NKDQGTYEDYVEGLR ddPTM_HeLa_CUDC101_4h_R1 4 NKDQGTYEDYVEGLR 15 1 P60660-2;F8VZU9;G3V1Y7;F8W1R7;G8JLA2;G3V1V0;F8W180;P60660;F8VPF3;J3KND3;B7Z6Z4 P60660-2 MYL6 Myosin light polypeptide 6 0 0 ;;; ;;; 182.02 1.53E-10 359493000 9645.7 10261.4 8380.02 8584.4 10623.5 9442.7 9545.2 9768.5 9973.9 9550.9 FALSE FALSE TRUE 8515.045668 10577.54157 8833.069229 8934.508937 9839.82557 9262.59623 9913.361561 10880.50655 9562.77162 9494.090822 0.896878472 1.114118431 0.930375472 0.941059982 1.036415783 0.975616982 1.044161231 1.146029331 1.007234057 1 13.21281414 -1 0.619474922 0.96150505 14.3435825 0.351975215 0.06044576 121.4467709 0.810215481 0.010892459 2217.842766 0.1 1 13.38207745 LLPSAPQTLPDGPLAS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 4 LLPSAPQTLPDGPLASPAR 19 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 1 0 LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPSAPQTLPDGPLAS(1)PAR;LLPS(0.497)APQTLPDGPLAS(0.502)PAR ;;; 239.87 2.41E-44 534054000 11845.2 9277.7 8925.3 8149 9072.7 7830 7265.8 6971.4 8282 9684.7 TRUE FALSE FALSE 10456.72361 9563.53494 9407.828716 8481.351443 8403.424996 7680.655796 7546.04434 7764.995997 7940.612455 9627.094974 1.086176426 0.993397797 0.977224047 0.880987615 0.872893123 0.79781656 0.783833998 0.806577272 0.824819167 1 13.23288481 -6.115109237 1.081772789 1.04026924 0.795078548 0.460430948 0.072977926 0.108840079 0.251323755 0.006328171 0.014316345 7.67E-07 6.115109237 -0.245190692 S(ph)TPPPNNLVNPVQELETERR ddPTM_HeLa_CUDC101_4h_R1 2 STPPPNNLVNPVQELETERR 20 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 S(0.5)T(0.5)PPPNNLVNPVQELETERR;S(0.5)T(0.5)PPPNNLVNPVQELETERR ; 117.18 2.32E-05 29092000 2328.5 2104.64 2000.39 2234.13 3134.72 2166.48 2214.85 2332.52 2482.67 2180.83 TRUE FALSE FALSE 2055.55676 2169.481464 2108.537134 2325.247478 2903.477951 2125.158004 2300.277506 2598.044648 2380.333292 2167.858326 0.948196999 1.000748729 0.972636038 1.072601217 1.339330119 0.980302992 1.061082949 1.198438393 1.098011463 1 11.08205476 -6.114858565 4.544171757 0.977379555 1.135039325 0.298743908 0.096167736 0.166088453 5.507162807 0.012919616 0.021904019 7.68E-07 6.114858565 0.15765977 AET(ph)PTESVSEPEVATK ddPTM_HeLa_CUDC101_4h_R1 2 AETPTESVSEPEVATK 16 0 M0R0Q7;P18858-2;P18858;P18858-3;B4E135 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 0 AET(0.992)PT(0.004)ES(0.001)VS(0.002)EPEVATK;AET(0.998)PT(0.002)ESVSEPEVATK ; 255.16 3.80E-56 196859000 15429.9 13192.7 11400.7 12294.1 12712.6 12224.2 11502.9 10325.3 12767.7 12632.8 TRUE FALSE FALSE 13621.23051 13599.15145 12017.05633 12795.50654 11774.81683 11991.04375 11946.57071 11500.69042 12241.41 12557.65954 1.084694999 1.082936785 0.956950321 1.018940392 0.937660142 0.95487887 0.951337362 0.915830723 0.974816204 1 13.61627998 -6.114667075 1.260618911 1.042403513 0.939795424 0.45377785 0.041006912 0.262148721 0.822048353 0.007070692 0.014972313 7.68E-07 6.114667075 -0.102608089 DKEVS(ph)DDEAEEK ddPTM_HeLa_CUDC101_4h_R1 3 DKEVSDDEAEEK 12 1 P07900;P07900-2;G3V2J8 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 DKEVS(1)DDEAEEK;DKEVS(1)DDEAEEK;DKEVS(1)DDEAEEK ;; 138.19 0.0065269 391096000 23131.6 15671.1 16623.9 17755.8 14250.7 15823.2 15184.3 11439 17906 18469.3 TRUE FALSE FALSE 20420.14891 16153.90802 17522.63832 18479.95827 13199.45425 15521.39882 15769.96354 12741.16952 17167.9071 18359.44378 1.112242242 0.87986914 0.95442098 1.006564169 0.718946304 0.845417705 0.858956498 0.693984506 0.935099522 1 14.16423473 -6.114638508 0.823031372 1.048176882 0.774203502 0.477512301 0.088789435 0.305505092 0.402202391 0.01616376 0.042342996 7.68E-07 6.114638508 -0.27397338 TPAST(ph)PVSGTPQAS(ph)PMIER ddPTM_HeLa_CUDC101_4h_R1 1 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 2 0 T(0.036)PAS(0.077)T(0.42)PVS(0.146)GT(0.321)PQAS(1)PMIER 109.42 0.0012432 3187000 1124.7 1027.8 1031 1199.9 1391 1413.2 1128.8 1084.8 1346.8 1345.5 TRUE FALSE FALSE 992.8643709 1059.4653 1086.738979 1248.837108 1288.388701 1386.245565 1172.338194 1208.289247 1291.284334 1337.496906 0.742330219 0.792125421 0.812517004 0.933712147 0.9632835 1.036447679 0.876516565 0.903395919 0.965448464 1 10.38531984 -6.114487637 6.745450032 0.862997972 0.946763571 0.195237898 0.08157525 0.427298516 22.55705719 0.016516038 0.027540635 7.68E-07 6.114487637 0.0837656 EMFPYEAST(ph)PTGISASCR ddPTM_HeLa_CUDC101_4h_R1 1 EMFPYEASTPTGISASCR 18 0 P42167;G5E972;H0YJH7;P42167-2 P42167 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 EMFPYEAS(0.231)T(0.767)PT(0.002)GIS(0.001)ASCR 92.307 0.0028852 0 1425.7 871.58 727.3 848.48 527.25 535.59 526.04 329.72 981.17 921.14 TRUE FALSE FALSE 1258.581607 898.4323467 766.620038 883.0846818 488.3558179 525.3745131 546.329539 367.253992 940.7257573 915.6610183 1.374506048 0.981184444 0.837231271 0.964423148 0.53333691 0.573765294 0.596650429 0.401080733 1.027373382 1 9.838669795 -6.114424125 0.986571316 1.169695267 0.500576547 0.757326755 0.139107004 0.204111432 0.391066686 0.030306396 0.071824131 7.68E-07 6.114424125 -0.66911872 TPIS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 2 TPISPLK 7 0 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 T(0.04)PIS(0.96)PLK;T(0.024)PIS(0.976)PLK ; 106.88 0.014928 1836020000 14651.3 13490.6 13033.2 12191.3 13679.6 12271.8 11841 12275.8 13681.1 13457.8 TRUE FALSE FALSE 12933.89682 13906.2294 13737.81422 12688.51391 12670.48316 12037.73586 12297.71134 13673.22745 13117.15927 13377.75241 0.966821364 1.039504169 1.02691497 0.948478752 0.947130936 0.89983246 0.91926588 1.022087047 0.980520409 1 13.70754813 -6.11341803 7.61060956 0.991825203 0.942468274 0.34883718 0.036116597 0.270321011 16.40728333 0.00561151 0.009336566 7.70E-07 6.11341803 -0.049356929 IDSNIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 IDSNISPK 8 0 Q9H501 Q9H501 ESF1 ESF1 homolog 1 0 IDS(0.001)NIS(0.999)PK;IDS(0.006)NIS(0.994)PK ; 90.913 0.028126 323880000 14634.4 13891.5 12920.7 12103.8 11702.8 11935.6 11023.3 12671.8 12791.9 14224 TRUE FALSE FALSE 12918.97782 14319.48065 13619.23212 12597.44528 10839.50776 11707.94832 11448.47237 14114.30649 12264.61247 14139.39502 0.913686746 1.012736446 0.9632118 0.890946555 0.766617507 0.82803743 0.809686154 0.99822563 0.86740716 1 13.78743277 -6.113141155 3.918218222 0.963193101 0.844514877 0.315273143 0.068514132 0.170238412 4.599713629 0.009606199 0.016474442 7.71E-07 6.113141155 -0.118678223 NKHEAMITDLEER ddPTM_HeLa_CUDC101_4h_R1 1 NKHEAMITDLEER 13 1 P35579 P35579 MYH9 Myosin-9 0 0 86.262 0.012884 26672000 7818.7 7415.3 6799.7 6661.2 7809.8 7797.9 6975.8 6939.3 7339.3 7283.3 FALSE FALSE TRUE 6902.203838 7643.756604 7167.31235 6932.872528 7233.686613 7649.16805 7244.858943 7729.241862 7036.770948 7239.978608 0.953345888 1.055770606 0.989963194 0.957581908 0.999130937 1.056518046 1.000674081 1.067577997 0.971932561 1 12.82176972 -4.494067175 0.598159973 0.982147894 1.088822412 0.320215421 0.032419874 2.488592441 0.713881364 0.00641808 0.172456683 3.21E-05 4.494067175 0.106674519 NKHPDEDAVEAEGHEVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 NKHPDEDAVEAEGHEVKR 18 2 Q9NY27-2;Q9NY27-3;Q9NY27;H7C559;C9IZ04 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 0 1 ; NKHPDEDAVEAEGHEVK(1)R;NKHPDEDAVEAEGHEVK(1)R 82.837 0.0070888 6860300 3614.7 3154.8 3370 3156.8 3567.4 3267.3 3640.3 3338.9 4151.3 4487.4 FALSE TRUE FALSE 3190.990346 3251.995649 3552.192394 3285.547949 3304.240009 3204.981696 3780.70759 3718.98688 3980.181657 4460.708745 0.715355009 0.729031155 0.796329148 0.736552897 0.740743276 0.718491585 0.847557598 0.833721073 0.892275619 1 12.12305724 -9.305711463 0.951111455 1.004911545 0.761476127 0.617410553 0.054732362 0.215591676 0.338350407 0.036925216 0.009109668 4.95E-10 9.305711463 -0.243435418 LSGEMPPAS(ph)PSFPR ddPTM_HeLa_CUDC101_4h_R1 2 LSGEMPPASPSFPR 14 0 Q96JM7-2;Q96JM7 Q96JM7-2 L3MBTL3 Lethal(3)malignant brain tumor-like protein 3 1 0 LSGEMPPAS(0.995)PS(0.005)FPR;LSGEMPPAS(0.676)PS(0.324)FPR ; 164.7 2.18E-05 23622000 3391.2 2819.5 2505.9 2682 3002.5 2694.63 2359.6 2496.79 3168 2839.4 TRUE FALSE FALSE 2993.688677 2906.365453 2641.376534 2791.383553 2781.011557 2643.234422 2450.610562 2781.014481 3037.413699 2822.511123 1.060647256 1.029709123 0.935825022 0.988971675 0.985296935 0.936483262 0.868237699 0.985297971 1.076138788 1 11.46276355 -6.112947246 0.873601264 1.028445799 0.928318842 0.503856622 0.041460409 0.382910483 0.571011801 0.007754079 0.019659138 7.71E-07 6.112947246 -0.100126957 GS(ph)PDGSLQTGKPSAPK ddPTM_HeLa_CUDC101_4h_R1 3 GSPDGSLQTGKPSAPK 16 1 Q8IZL8;C9JFV4;E7EV54 Q8IZL8 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 GS(0.978)PDGS(0.022)LQTGKPSAPK;GS(1)PDGSLQTGKPSAPK;GS(0.999)PDGS(0.001)LQTGKPSAPK ;; 165.24 0.00012031 137270000 9307.3 6328.3 6679.4 7003 6126.4 6359 5903.6 5207.9 7156.9 7152.6 TRUE FALSE FALSE 8216.312403 6523.267422 7040.508568 7288.61261 5674.467678 6237.71267 6131.30383 5800.746285 6861.889553 7110.056017 1.15559039 0.917470609 0.990218439 1.025113247 0.798090432 0.877308513 0.862342549 0.815850996 0.965096412 1 12.79564521 -6.111476891 0.971826038 1.066779076 0.83490992 0.474045119 0.074839105 0.281009155 0.522030434 0.014283146 0.034192863 7.74E-07 6.111476891 -0.231869156 NQVIIPLVLS(ph)PDRDEDLMR ddPTM_HeLa_CUDC101_4h_R1 2 NQVIIPLVLSPDRDEDLMR 19 1 Q96G25;Q96G25-2 Q96G25 MED8 Mediator of RNA polymerase II transcription subunit 8 1 0 NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR ; 85.7 0.0026405 9010700 2591.93 2323.02 2092.62 2090.98 2159.29 1841.28 1926.03 1721.8 2402.58 2640.85 TRUE FALSE FALSE 2288.107895 2394.589493 2205.753367 2176.259202 2000.003479 1806.160652 2000.317622 1917.802752 2303.544635 2625.142107 0.871612965 0.912175187 0.84024151 0.829006246 0.761864843 0.688023954 0.76198451 0.730551976 0.87749331 1 11.35817981 -6.110544575 0.173380804 1.064514496 0.558773268 0.709860134 0.047872405 1.727197676 0.127434005 0.103917504 0.249556179 7.75E-07 6.110544575 -0.505741228 SVVS(ph)DLEADDVK ddPTM_HeLa_CUDC101_4h_R1 3 SVVSDLEADDVK 12 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 S(0.374)VVS(0.626)DLEADDVK;S(0.001)VVS(0.999)DLEADDVK;S(0.029)VVS(0.971)DLEADDVK ;; 190.34 3.99E-11 164190000 16785.7 11308.5 11269.1 11512 11347 11490.1 9988.7 6890.1 10126.3 15754 TRUE FALSE FALSE 14818.10569 11656.90148 11878.34163 11981.50912 10509.95442 11270.94549 10373.9675 7674.441133 9708.889628 15660.29451 0.946221394 0.744360298 0.758500527 0.765088365 0.671121122 0.719714784 0.662437574 0.490057267 0.619968521 1 13.93482372 -6.110043299 0.322486727 1.02806942 0.485941025 0.086017679 0.134903743 0.579610768 0.11003691 0.034327808 0.115988128 7.76E-07 6.110043299 -0.542128394 SLS(ph)PLIK ddPTM_HeLa_CUDC101_4h_R1 2 SLSPLIK 7 0 Q7Z4H7-3;Q7Z4H7;Q5VY60 Q7Z4H7-3 HAUS6 HAUS augmin-like complex subunit 6 1 0 S(0.141)LS(0.859)PLIK;S(0.001)LS(0.999)PLIK ; 92.439 0.030648 66156000 14903.5 12563.8 11977.4 11762.5 12622.4 11633.4 11318.5 9850.8 12658.6 13519 TRUE FALSE FALSE 13156.53432 12950.87579 12624.93447 12242.22559 11691.2707 11411.51228 11755.05834 10972.17525 12136.80715 13438.58839 0.97901163 0.963708048 0.939453915 0.910975561 0.869977587 0.849160042 0.87472419 0.816467842 0.903131103 1 13.71409398 -6.109337165 0.646253116 0.994647575 0.832037212 0.690111735 0.031467909 0.101245888 0.079336362 0.002601628 0.00786019 7.77E-07 6.109337165 -0.162610363 SPPREGSQGELT(ph)PANSQSR ddPTM_HeLa_CUDC101_4h_R1 1 SPPREGSQGELTPANSQSR 19 1 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QQX0 C9JFE4 GPS1 COP9 signalosome complex subunit 1 1 0 SPPREGSQGELT(0.733)PANS(0.174)QS(0.093)R 61.111 0.036449 6955000 166.18 255.33 207.9 199.52 395.66 182.01 461.36 223.85 380.82 166.31 TRUE FALSE FALSE 146.7006323 263.1964147 219.1397029 207.657288 366.4729501 178.5384625 479.1548097 249.3321792 365.1224384 165.3207807 0.887369583 1.59203467 1.32554239 1.256087027 2.216738564 1.079951726 2.898333819 1.50817204 2.208569527 1 7.369124272 -6.107482277 0.608376663 0.935825789 2.091467547 0 0.625389743 0.564676722 0.387906475 0.098066943 0.30629118 7.81E-07 6.107482277 1.155641758 RPTETNPVTSNS(ph)DEECNETVK ddPTM_HeLa_CUDC101_4h_R1 4 RPTETNPVTSNSDEECNETVK 21 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 RPTETNPVTSNS(1)DEECNETVK;RPTETNPVTSNS(1)DEECNETVK;RPTETNPVT(0.007)S(0.143)NS(0.849)DEECNETVK;RPT(0.001)ET(0.001)NPVT(0.049)S(0.148)NS(0.801)DEECNET(0.002)VK ;;; 163.46 7.98E-08 390873000 14234.4 11239.7 11382.7 10697.8 10759.6 10719.6 10510.3 9442.7 11190.9 11678 TRUE FALSE FALSE 12565.86521 11585.98183 11998.08319 11134.10252 9965.885744 10515.14149 10915.68579 10517.6188 10729.60637 11608.53874 1.08246744 0.99805687 1.033556718 0.959130411 0.858496144 0.905810949 0.940315232 0.906024353 0.924285701 1 13.50289876 -6.106137621 3.158077187 1.036039132 0.905446715 0.487832554 0.045973581 0.100680531 1.913958545 0.005737562 0.010067961 7.83E-07 6.106137621 -0.130592417 KVEEDLKADEPSSEES(ph)DLEIDK ddPTM_HeLa_CUDC101_4h_R1 1 KVEEDLKADEPSSEESDLEIDK 22 2 P50502;Q3KNR6;F6VDH7 P50502 ST13 Hsc70-interacting protein 1 0 KVEEDLKADEPS(0.001)S(0.003)EES(0.997)DLEIDK 70.593 0.0013504 31164000 5110.6 3744.3 2974.5 3685.4 3050.1 3320 2860.1 2633.1 3617.3 3315.4 TRUE FALSE FALSE 4511.543215 3859.657445 3135.310467 3835.706542 2825.1002 3256.676531 2970.415015 2932.841461 3468.193363 3295.679853 1.368926418 1.171126328 0.951339513 1.163858965 0.857213178 0.988165318 0.901305693 0.889904842 1.052345348 1 11.68636039 -6.104438862 1.199115512 1.173298733 0.911666886 0.364570695 0.120336673 0.39457019 1.120195991 0.026191735 0.056957726 7.86E-07 6.104438862 -0.261631848 GGAGAWLGGPAASLS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 2 GGAGAWLGGPAASLSPPK 18 0 Q5SXM2 Q5SXM2 SNAPC4 snRNA-activating protein complex subunit 4 1 0 GGAGAWLGGPAAS(0.234)LS(0.766)PPK;GGAGAWLGGPAAS(0.002)LS(0.998)PPK ; 168.41 8.63E-12 12499000 3138.3 3168.5 2982.9 2572.6 2439.6 3025.3 2417.5 2121.5 2683.7 3178.7 TRUE FALSE FALSE 2770.433231 3266.117729 3144.164597 2677.521748 2259.635568 2967.597443 2510.743785 2363.002985 2573.07675 3159.792951 0.876776825 1.033649287 0.995053994 0.84737253 0.715121403 0.939174651 0.794591235 0.747834754 0.81431815 1 11.62561431 -6.104325808 5.132563918 0.951976083 0.805824624 0.418267228 0.080701169 0.154353956 6.175565033 0.011308956 0.019061165 7.86E-07 6.104325808 -0.146151459 AEIKEMLASDDEEDVS(ph)SK ddPTM_HeLa_CUDC101_4h_R1 1 AEIKEMLASDDEEDVSSK 18 1 E7ETM8;Q0ZGT2-4 E7ETM8 NEXN Nexilin 1 0 AEIKEMLAS(0.007)DDEEDVS(0.825)S(0.169)K 71.309 0.010003 5077700 1664.1 1467.3 1599.7 1682.8 2321.3 1805.9 1748.4 2158.2 1760.9 1670.2 TRUE FALSE FALSE 1469.036721 1512.505774 1686.184621 1751.431858 2150.062324 1771.455466 1815.836374 2403.880764 1688.314957 1660.265576 0.884820321 0.911002309 1.015611385 1.054910662 1.295011084 1.066971147 1.093702357 1.447889301 1.016894514 1 10.69719832 -6.103861807 2.029926149 0.943062119 1.205790548 0.549744287 0.108969664 0.181662704 1.470854475 0.016605612 0.030996907 7.87E-07 6.103861807 0.26272843 WLPSS(ph)PSGVAK ddPTM_HeLa_CUDC101_4h_R1 2 WLPSSPSGVAK 11 0 Q8IWI9;Q8IWI9-3;H3BP52;H3BTF4 Q8IWI9 MGA MAX gene-associated protein 1 0 WLPS(0.108)S(0.871)PS(0.021)GVAK;WLPS(0.074)S(0.852)PS(0.074)GVAK ; 149.38 0.0007278 76156000 8560.4 7907.4 7872.4 7162.7 6876.9 7078.1 6552.7 7410.4 7472.2 8808.3 TRUE FALSE FALSE 7556.962889 8151.017621 8298.005757 7454.825866 6369.604788 6943.097035 6805.439834 8253.969982 7164.192753 8755.90784 0.863070172 0.930916333 0.947703643 0.851405246 0.727463663 0.792961411 0.777239774 0.942674379 0.818212444 1 13.09604105 -6.103192117 4.226917011 0.933902594 0.804759789 0.29425472 0.070099752 0.168249404 5.171071639 0.010609423 0.018121235 7.89E-07 6.103192117 -0.129142804 EY(ph)AMKSLS(ph)LLY(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 EYAMKSLSLLYPK 13 1 A0A0C4DG75;Q96AQ7-3;Q96AQ7;Q96AQ7-4 A0A0C4DG75 CIDEC Cell death activator CIDE-3 3 0 EY(0.999)AMKS(0.101)LS(0.913)LLY(0.986)PK 57.567 0.0030478 0 75.235 146.54 163.69 171.93 240.05 229.36 215.76 185.85 266.15 220.45 TRUE FALSE FALSE 66.41606735 151.0547237 172.5395765 178.9420485 222.3419897 224.9853401 224.0819355 207.0064128 255.1791843 219.1387536 0.303077691 0.689310865 0.787353098 0.816569619 1.014617388 1.026679838 1.022557315 0.944636261 1.164463976 1 7.77570083 -6.102322961 1.691737287 0.666861338 1.00735564 0.065869681 0.224838684 0.390778936 2.200722607 0.04177631 0.081133086 7.90E-07 6.102322961 0.340494303 QDPVTYISET(ph)DEEDDFMCK ddPTM_HeLa_CUDC101_4h_R1 1 QDPVTYISETDEEDDFMCK 19 0 P35251-2;P35251;D6RAD2 P35251-2 RFC1 Replication factor C subunit 1 1 0 QDPVTYIS(0.27)ET(0.73)DEEDDFMCK 124.66 7.03E-05 2545800 2172.7 2161.4 2102.5 1668.6 1593.2 2038.1 1581.3 1059.1 1673.9 2180.4 TRUE FALSE FALSE 1918.0194 2227.990172 2216.16751 1736.65272 1475.67281 1999.226638 1642.291271 1179.663663 1604.901134 2167.430884 0.884927595 1.027940586 1.022485896 0.801249412 0.680839616 0.922394644 0.757713329 0.54426818 0.740462427 1 11.08177027 -6.101877164 4.815423052 0.956603755 0.742216079 0.40514478 0.117973467 0.140357122 5.209721786 0.015069713 0.025504147 7.91E-07 6.101877164 -0.214387675 EDDDVIVNKPHVS(ph)DEEEEEPPFYHHPFK ddPTM_HeLa_CUDC101_4h_R1 2 EDDDVIVNKPHVSDEEEEEPPFYHHPFK 28 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-2;H7C1M2;H7C2G8;J3QSZ5 P18583-10 SON Protein SON 1 0 EDDDVIVNKPHVS(0.999)DEEEEEPPFY(0.001)HHPFK;EDDDVIVNKPHVS(1)DEEEEEPPFYHHPFK ; 84.156 4.48E-07 385945000 13647.9 11032.3 10603.8 10038.1 10075.7 10323.9 9440.3 9423.5 12196.8 10383.3 TRUE FALSE FALSE 12048.11385 11372.19209 11177.0735 10447.49711 9332.435685 10126.98881 9804.415533 10496.23315 11694.04274 10321.53967 1.167278743 1.101792218 1.082888199 1.012203357 0.904170888 0.981150984 0.949898547 1.016925138 1.132974645 1 13.33337057 -6.099737815 3.630956241 1.08324332 0.962770485 0.620587923 0.048960736 0.183185343 4.459451428 0.010245195 0.017756089 7.95E-07 6.099737815 -0.120472835 SCT(ph)PSPDQISHR ddPTM_HeLa_CUDC101_4h_R1 3 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 S(0.007)CT(0.971)PS(0.022)PDQISHR;S(0.05)CT(0.843)PS(0.107)PDQISHR;SCT(0.766)PS(0.233)PDQISHR ;; 154.81 0.00037435 51361300 6935.3 5081.8 5349.4 4612.5 5025.9 4328.2 4049.67 4590.46 5549.3 5055.2 TRUE FALSE FALSE 6122.354647 5238.364235 5638.604745 4800.617687 4655.14937 4245.646796 4205.867128 5113.019411 5320.555505 5025.131446 1.218347164 1.042433276 1.122081045 0.955321814 0.926373652 0.844882734 0.83696659 1.017489685 1.05878932 1 12.29494562 -6.099647474 2.515428508 1.102101902 0.89674635 0.586230867 0.072247102 0.179615442 2.225013288 0.014385686 0.026009136 7.95E-07 6.099647474 -0.205355552 ERTDVIQGDDVADATSEVEVS(ph)STSETTPK ddPTM_HeLa_CUDC101_4h_R1 2 ERTDVIQGDDVADATSEVEVSSTSETTPK 29 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 ERTDVIQGDDVADAT(0.002)S(0.002)EVEVS(0.247)S(0.247)T(0.175)S(0.175)ET(0.125)T(0.027)PK;ERTDVIQGDDVADATS(0.001)EVEVS(0.452)S(0.127)T(0.127)S(0.127)ET(0.038)T(0.127)PK ; 66.77 0.00026397 4804400 1391.18 1276.33 1359.36 1325.85 1649.82 1567.4 1525.72 1382.41 1343.25 1339.9 TRUE FALSE FALSE 1228.107989 1315.652214 1432.851113 1379.923894 1528.116066 1537.504456 1584.567531 1539.777967 1287.880666 1331.930215 0.922051302 0.987778638 1.07577041 1.036033178 1.147294391 1.154343102 1.189677592 1.156050031 0.966928036 1 10.37930278 -6.099613907 0.997418189 0.963588278 1.175167914 0.877632315 0.031242056 0.144484896 0.282914417 0.006802131 0.016202363 7.95E-07 6.099613907 0.211579637 ASSPAESS(ph)PEDSGYMR ddPTM_HeLa_CUDC101_4h_R1 2 ASSPAESSPEDSGYMR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 ASSPAES(0.08)S(0.92)PEDSGYMR;ASSPAES(0.144)S(0.856)PEDSGYMR ; 196.37 3.06E-16 32103000 4078.3 4302.2 3829.8 3700.2 4027.5 3565.6 3641.8 3910.6 3914.6 4241.9 TRUE FALSE FALSE 3600.247856 4434.745683 4036.850573 3851.11015 3730.399349 3497.592121 3782.265446 4355.766897 3753.238531 4216.66899 0.85381325 1.051717764 0.957355339 0.913306252 0.8846792 0.82946803 0.896979453 1.032987628 0.890095604 1 12.04188806 -6.098477537 5.66087686 0.941903713 0.903608587 0.06199881 0.069830211 0.628424089 29.46798489 0.011981864 0.020111558 7.97E-07 6.098477537 -0.038295126 ESPRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGRR ddPTM_HeLa_CUDC101_4h_R1 2 ESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR 41 2 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 0 ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR ; 78.485 2.13E-08 186098000 772.02 895.44 828.43 964.76 1395.03 1127.51 1077.41 1365.34 1148.91 566.87 TRUE FALSE FALSE 681.5249859 923.027445 873.2174317 1004.107083 1292.121416 1106.004625 1118.966065 1520.764787 1101.551444 563.498232 1.209453637 1.638030774 1.549636506 1.781917007 2.29303544 1.962747286 1.985749025 2.698792472 1.954844542 1 9.138267274 -6.095159491 0.390659346 0.977971552 2.586256462 0.429091367 0.355471633 0.407351005 0.109932778 0.073841998 0.262161052 8.03E-07 6.095159491 1.60828491 NLATTVTEEILEK ddPTM_HeLa_CUDC101_4h_R1 1 NLATTVTEEILEK 13 0 O43390;B4DT28;O43390-4;O43390-3;O43390-2 O43390 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 0 134.99 0.0051377 6845700 403.32 372.46 510.78 420.74 368.21 405.78 539.53 548.76 574.34 638.63 FALSE FALSE TRUE 356.043441 383.9350511 538.3943118 437.8995958 341.0478819 398.0404226 560.3398528 611.2286202 550.6654621 634.8314004 0.560847244 0.604782704 0.848090235 0.689788809 0.537225918 0.627001787 0.882659321 0.962820396 0.867420014 1 9.310229679 -9.491512135 1.245835784 0.999411592 0.694746234 0.255228114 0.141554251 0.394902078 1.100172639 0.101654255 0.024960918 3.22E-10 9.491512135 -0.304665358 NLDDGIDDER ddPTM_HeLa_CUDC101_4h_R1 4 NLDDGIDDER 10 0 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YAP2 P11940 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 0 ;;; ;;; 221.5 4.55E-32 482376800 12913.5 11481.2 9310 10665.8 10412.9 10406.4 9514.8 9651.2 11267.3 11597.1 FALSE FALSE TRUE 11399.79911 11834.92216 9813.326761 11100.79743 9644.761112 10207.91526 9881.789023 10749.8536 10802.85712 11528.11993 0.988868885 1.026613379 0.851251272 0.96293216 0.836629144 0.88547962 0.857189991 0.932489743 0.937087503 1 13.49286963 -6.763469074 24.9998093 0.996987005 0.887279392 0.583386921 0.041328043 20.98298012 258449.3099 0.005329367 0.007201705 1.72E-07 6.763469074 -0.109707612 NLDDGIDDERLR ddPTM_HeLa_CUDC101_4h_R1 5 NLDDGIDDERLR 12 1 P11940;P11940-2;E7EQV3;A0A087WTT1;E7ERJ7;H0YAR2;Q9H361;H0YAP2 P11940 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 3 0 0 ;;;; ;;;; 221.09 3.69E-32 295166400 16100.4 15185.6 14815.8 14863 17426.4 15323.8 14812.4 16068.7 16288.7 15382.9 FALSE FALSE TRUE 14213.13552 15653.45034 15616.78696 15469.17738 16140.88919 15031.52405 15383.71923 17897.89586 15617.27289 15291.40183 0.929485451 1.023676607 1.021278961 1.011625851 1.055553269 0.983004973 1.00603721 1.170454878 1.021310738 1 13.90043305 -1.016686279 1.017028885 0.981739517 199.9999958 0.572185498 0.038191432 990.237269 1.215882027 0.00671897 459502.7211 0.096230717 1.016686279 199.0182563 NLDDTIDDEKLR ddPTM_HeLa_CUDC101_4h_R1 1 NLDDTIDDEKLR 12 1 H0Y5F5;B1ANR0;Q13310-2;Q13310;Q13310-3;H0YEU6;P0CB38 H0Y5F5 PABPC4;PABPC4L Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 4-like 0 0 128.68 0.0023636 9579200 3180 2690.5 2578.7 2821.2 3045.7 3236.3 2854.9 2201.9 3363.9 2912.2 FALSE FALSE TRUE 2807.245221 2773.391116 2718.112322 2936.26073 2821.024779 3174.57297 2965.014449 2452.555396 3225.238618 2894.878105 0.969728299 0.958033815 0.938938437 1.014295118 0.974488278 1.096617147 1.024227737 0.847205066 1.114118972 1 11.49928689 NLDK(ac)SIDNK ddPTM_HeLa_CUDC101_4h_R1 2 NLDKSIDNK 9 1 P11940;P11940-2;E7EQV3;A0A087WTT1;E5RGH3;B1ANR1;H0YEQ8;E5RJB9;E5RH24;H0Y5F5;B1ANR0;Q13310-2;Q13310;Q13310-3;P0CB38 P11940;H0Y5F5 PABPC1;PABPC4;PABPC4L Polyadenylate-binding protein 1;Polyadenylate-binding protein;Polyadenylate-binding protein 4;Polyadenylate-binding protein 4-like 0 1 ; NLDK(1)SIDNK;NLDK(1)SIDNK 163.88 0.0018861 4597800 4348.1 3897 3614.6 3856.6 4027.2 3566.1 3652.4 4040.6 3661 3603.8 FALSE TRUE FALSE 3838.422309 4017.061951 3810.01621 4013.888818 3730.121479 3498.082584 3793.274291 4500.565571 3510.09203 3582.364437 1.071477338 1.121343744 1.06354791 1.120457979 1.041245676 0.976473121 1.058874483 1.256311481 0.979825501 1 11.8066964 -13.52287875 0.158787339 0.672244027 1.108805206 0.258770116 0.068148934 81.85332483 0.869631241 8.293734694 0.136045131 3.00E-14 13.52287875 0.436561179 SPPST(ph)GSTYGSSQK ddPTM_HeLa_CUDC101_4h_R1 1 SPPSTGSTYGSSQK 14 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.039)PPS(0.062)T(0.782)GS(0.113)T(0.004)YGSSQK 179.65 2.61E-07 136970000 2243.8 1531.9 1562.1 1387.6 1170.8 1436.6 1383.5 585.97 1733.3 1506.6 TRUE FALSE FALSE 1980.785165 1579.096023 1646.551851 1444.192326 1084.432417 1409.199249 1436.862058 652.6744562 1661.85264 1497.638676 1.32260551 1.05439052 1.099431977 0.964312921 0.724094826 0.94094742 0.959418371 0.435802351 1.109648587 1 10.54847388 -6.094599348 1.586276447 1.149435294 0.782824968 0.521041769 0.15699932 0.255108897 1.264869231 0.02824782 0.056010209 8.04E-07 6.094599348 -0.366610325 KRNQMTPDFSRQS(ph)HDK ddPTM_HeLa_CUDC101_4h_R1 1 KRNQMTPDFSRQSHDK 16 3 J3KNU2;E5RFF8;Q8IX29-2;Q8IX29 J3KNU2 FBXO16 F-box only protein 16 1 0 KRNQMT(0.001)PDFS(0.091)RQS(0.908)HDK 47.532 0.0033145 0 572.71 537.53 436.34 384.13 311.45 340.04 309.76 284.21 431.07 473.04 TRUE FALSE FALSE 505.577802 554.0906622 459.9298603 399.7964818 288.474954 333.5543035 321.707547 316.5633176 413.3011121 470.226337 1.075179679 1.178348847 0.978103147 0.850221373 0.613481065 0.709348408 0.684154675 0.673214775 0.878940798 1 8.877211535 -6.094517217 2.413412485 1.047157049 0.674406953 0.821706768 0.076793492 0.065664915 0.750560492 0.009340628 0.017021209 8.04E-07 6.094517217 -0.372750096 NLDSLEEDLDFLR ddPTM_HeLa_CUDC101_4h_R1 2 NLDSLEEDLDFLR 13 0 P61758-2;P61758 P61758-2 VBP1 Prefoldin subunit 3 0 0 ; ; 222.79 7.21E-42 24709000 1019.67 1390.02 1164.55 1064.33 1190.53 956.01 1025.37 913.92 1092.32 1383.97 FALSE FALSE TRUE 900.1458283 1432.844869 1227.509096 1107.737978 1102.706974 937.7757021 1064.918864 1017.956959 1047.294107 1375.738085 0.65430029 1.041509924 0.892254935 0.8051954 0.801538451 0.681652789 0.774070934 0.739935144 0.761259806 1 10.42599012 -5.684156741 2.2710478 0.854090484 0.737238103 0.223031649 0.106354018 0.517040261 5.415528497 0.021369524 0.047748504 2.07E-06 5.684156741 -0.116852381 STT(ph)PPPAEPVSLPQEPPKPR ddPTM_HeLa_CUDC101_4h_R1 1 STTPPPAEPVSLPQEPPKPR 20 1 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 S(0.138)T(0.138)T(0.724)PPPAEPVSLPQEPPKPR 165.53 3.03E-06 6381500000 6019.3 6495.2 5673.6 5337.8 5198.5 5453.6 5254.5 5586 5811.8 6211.9 TRUE FALSE FALSE 5313.726779 6695.309413 5980.331978 5555.498556 4815.017012 5349.581666 5457.167825 6221.887661 5572.235144 6174.951343 0.860529336 1.084269178 0.968482446 0.899682969 0.779765984 0.866335841 0.883758838 1.007601083 0.902393369 1 12.59221205 -6.093742058 5.843762366 0.948194545 0.878094818 0.185129074 0.076195886 0.369136545 18.67777922 0.012819372 0.021498076 8.06E-07 6.093742058 -0.070099727 SGSPSDNS(ph)GAEEMEVSLAKPK ddPTM_HeLa_CUDC101_4h_R1 4 SGSPSDNSGAEEMEVSLAKPK 21 1 P31749-2;P31749 P31749-2 AKT1 RAC-alpha serine/threonine-protein kinase 1 0 S(0.001)GS(0.004)PS(0.126)DNS(0.869)GAEEMEVSLAKPK;S(0.036)GS(0.031)PS(0.122)DNS(0.811)GAEEMEVSLAKPK;S(0.003)GS(0.009)PS(0.168)DNS(0.82)GAEEMEVSLAKPK;S(0.004)GS(0.057)PS(0.202)DNS(0.737)GAEEMEVSLAKPK ;;; 103.9 6.66E-05 120424000 8674.9 8043.2 6892.3 7800.1 9383.2 8495.5 7540.5 6885.9 8209.7 7684.6 TRUE FALSE FALSE 7658.041372 8291.001458 7264.918586 8118.221793 8691.02003 8333.462492 7831.339611 7669.763022 7871.292691 7638.891657 1.002506871 1.08536707 0.951043543 1.06274865 1.137733119 1.090925604 1.025193178 1.004041341 1.030423397 1 12.89914761 -6.093704597 11.13360505 1.005474032 1.068124054 0.217077125 0.046175698 0.58174521 66.77323529 0.006835637 0.011341087 8.06E-07 6.093704597 0.062650022 APELPNTSSS(ph)PSLK ddPTM_HeLa_CUDC101_4h_R1 2 APELPNTSSSPSLK 14 0 Q9UN79 Q9UN79 SOX13 Transcription factor SOX-13 1 0 APELPNTSS(0.003)S(0.971)PS(0.026)LK;APELPNT(0.016)S(0.004)S(0.182)S(0.799)PSLK ; 213.83 5.41E-24 34380000 7913.5 6785.1 6511 6145.9 6389.8 5175.2 5662.7 5521.1 7167.3 7369 TRUE FALSE FALSE 6985.891526 6994.140889 6863.004355 6396.556367 5918.437184 5076.491682 5881.112236 6149.599707 6871.86086 7325.16886 0.953683343 0.95480951 0.936907324 0.873229886 0.807959147 0.693020431 0.802863708 0.839516443 0.938116375 1 12.8386463 -6.090801354 1.499501877 0.976160662 0.776981344 0.809967479 0.038948493 0.110481739 0.489934669 0.006421559 0.012969902 8.11E-07 6.090801354 -0.199179317 NSPS(ph)NLSSSSDTGSVGGTYR ddPTM_HeLa_CUDC101_4h_R1 2 NSPSNLSSSSDTGSVGGTYR 20 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 NS(0.423)PS(0.541)NLS(0.035)S(0.001)SSDTGSVGGTYR;NS(0.008)PS(0.991)NLSSSSDTGSVGGTYR ; 156.61 1.06E-05 39142000 5111.2 3812.9 4140.6 3443.4 3380.9 3088.9 3058.6 2906.2 4379 4266.3 TRUE FALSE FALSE 4512.072884 3930.37093 4364.453361 3583.836736 3131.497743 3029.984379 3176.571227 3237.030061 4198.495767 4240.923858 1.063936311 0.92677234 1.02912797 0.845060382 0.738399898 0.714463282 0.749028121 0.763284173 0.989995555 1 12.05016287 -6.090444984 2.238871631 1.023125766 0.73818702 0.909798953 0.03848134 0.060474559 0.596134606 0.006317207 0.01166342 8.12E-07 6.090444984 -0.284938746 S(ph)PSDSGYSYETIGK ddPTM_HeLa_CUDC101_4h_R1 1 SPSDSGYSYETIGK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.963)PS(0.037)DSGYSYETIGK 215.96 2.83E-24 72330000 2629.2 1788.9 1950.7 1449.2 1802.9 1399.5 1351.6 1212 2175 1822.7 TRUE FALSE FALSE 2321.009162 1844.013889 2056.160743 1508.30464 1669.903659 1372.806869 1403.731665 1349.969181 2085.345579 1811.858499 1.281010169 1.017747186 1.134835167 0.832462712 0.921652358 0.757678853 0.77474685 0.745074288 1.150942847 1 10.82325457 -6.090417447 1.333077417 1.1307937 0.772583523 0.758698675 0.087067985 0.196913221 0.69092611 0.019122603 0.040202964 8.12E-07 6.090417447 -0.358210177 APLKPYPVS(ph)PSDK ddPTM_HeLa_CUDC101_4h_R1 1 APLKPYPVSPSDK 13 1 J3KR24;A0A0A0MSX9;P41252;Q5TCC6 J3KR24 IARS "Isoleucine--tRNA ligase, cytoplasmic" 1 0 APLKPY(0.001)PVS(0.765)PS(0.234)DK 118.52 0.0119 64290000 4200.4 3034.4 3734.6 3017.8 3189.7 3229.5 2759.3 2645.9 3517.8 3597.7 TRUE FALSE FALSE 3708.035479 3127.886267 3936.503773 3140.878928 2954.402186 3167.902668 2865.727125 2947.098561 3372.794795 3576.30072 1.036835481 0.874615004 1.100719453 0.878247992 0.826105637 0.885804331 0.801310446 0.824063408 0.943095969 1 11.80425234 -6.088260712 5.757623886 1.010348565 0.837364595 0.601361137 0.059976894 0.091880575 4.755196361 0.007949186 0.013347526 8.16E-07 6.088260712 -0.17298397 VNDAEPGS(ph)PEAPQGK ddPTM_HeLa_CUDC101_4h_R1 4 VNDAEPGSPEAPQGK 15 0 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 0 VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK ;;; 223.06 1.49E-32 535928000 32663 25788 25127.8 26174.6 26901.5 25854.5 24454.7 22487.5 27376.5 26896.1 TRUE FALSE FALSE 28834.29265 26582.49771 26486.28488 27242.11332 24917.02994 25361.36849 25397.92597 25047.3861 26248.02908 26736.1208 1.078477049 0.9942541 0.990655491 1.018925428 0.931961302 0.948580711 0.949948056 0.936836959 0.981744109 1 14.70650254 -6.088027142 1.076751856 1.03484104 0.94027733 0.456529067 0.031185806 0.269058006 0.615331572 0.00596322 0.013772737 8.17E-07 6.088027142 -0.09456371 KWPQGAVPQLPPS(ph)APATSEMTTTPERPR ddPTM_HeLa_CUDC101_4h_R1 1 KWPQGAVPQLPPSAPATSEMTTTPERPR 28 2 P27708;F8VPD4;H7BZB3 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 KWPQGAVPQLPPS(0.186)APAT(0.186)S(0.186)EMT(0.147)T(0.147)T(0.147)PERPR 50.783 0.00964 24148000 2506.7 2386.7 2181.4 1937.1 2062.7 1886.3 1936.4 1707.2 2050.7 2194.1 TRUE FALSE FALSE 2212.868426 2460.231398 2299.333082 2016.103311 1910.53873 1850.32197 2011.087597 1901.540747 1966.169278 2181.049396 1.014588863 1.128003521 1.054232466 0.924373063 0.875972243 0.848363166 0.922073384 0.871846713 0.901478564 1 11.09080673 -6.087898267 4.074120531 1.021072147 0.881830226 0.593787538 0.055108638 0.10016021 3.026637143 0.006796889 0.011690532 8.17E-07 6.087898267 -0.139241921 ELNDWLT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ELNDWLTK 8 0 A0A075B6G3;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A087WV90;P11532-11;P11532;Q4G0X0 A0A075B6G3 DMD Dystrophin 1 0 ELNDWLT(1)K 119.75 0.03624 80253000 1296.5 2011.9 1574.9 2382.8 3690.9 3723.2 3643.7 1491 2893.6 1891.6 TRUE FALSE FALSE 1144.526235 2073.884254 1660.043858 2479.980883 3418.62966 3652.186163 3784.23873 1660.729413 2774.324583 1880.348679 0.608677661 1.102925366 0.882838314 1.318894156 1.818082837 1.942291982 2.012519684 0.883202904 1.475430921 1 10.87678449 -6.086764233 2.444780553 0.836998249 1.708070484 0.352230772 0.375272957 0.147581549 1.732942042 0.049383903 0.090110456 8.19E-07 6.086764233 0.871072236 NLGLEELGIELDPR ddPTM_HeLa_CUDC101_4h_R1 1 NLGLEELGIELDPR 14 0 E9PEX6;P09622-2;P09622-3;P09622 E9PEX6 DLD "Dihydrolipoyl dehydrogenase;Dihydrolipoyl dehydrogenase, mitochondrial" 0 0 124.38 0.00041554 0 545.86 590.1 609.72 703.84 545.13 702.08 535.62 585.79 678.61 789.49 FALSE FALSE TRUE 481.8751183 608.2802816 642.6833075 732.5456375 504.916846 688.6889937 556.2790428 652.4739658 650.6374086 784.7940784 0.614014723 0.77508266 0.81891967 0.933424012 0.643374944 0.877541017 0.708821662 0.831395118 0.829054941 1 9.616170346 -9.586185954 1.389126553 0.999378288 0.756463792 0.129359016 0.107995312 0.3168694 1.101125994 0.071050272 0.016718882 2.59E-10 9.586185954 -0.242914497 SLMS(ph)SPEDLTKDFEELKAEEVDVTK ddPTM_HeLa_CUDC101_4h_R1 2 SLMSSPEDLTKDFEELKAEEVDVTK 25 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.088)LMS(0.456)S(0.456)PEDLTKDFEELKAEEVDVTK;S(0.027)LMS(0.43)S(0.43)PEDLT(0.112)KDFEELKAEEVDVTK ; 74.579 0.0012147 75954000 1688.48 1516.16 1635.09 1409.22 1561.31 1274.31 1313.4 1561.32 1959.29 1716.66 TRUE FALSE FALSE 1490.558934 1562.871093 1723.487911 1466.694083 1446.135272 1250.00466 1364.058278 1739.054358 1878.527237 1706.44923 0.873485661 0.915861465 1.009984874 0.859500568 0.847452855 0.732517931 0.799354738 1.019107001 1.100839805 1 10.73678178 -6.085038162 7.036392983 0.941234278 0.839507112 0.28369469 0.091802754 0.277538774 19.83490935 0.01247459 0.0208071 8.22E-07 6.085038162 -0.101727165 EVSDS(ph)EAGGGPQGER ddPTM_HeLa_CUDC101_4h_R1 1 EVSDSEAGGGPQGER 15 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EVS(0.14)DS(0.86)EAGGGPQGER 171.78 6.36E-07 38929000 1112.4 964.29 946.25 784.66 662.57 611.8 633.11 679.67 1075 1071.8 TRUE FALSE FALSE 982.0061583 993.9986319 997.4071372 816.6618264 613.6935311 600.1309343 657.5292648 757.0408855 1030.688045 1065.424886 0.921703793 0.932959841 0.936159039 0.766512813 0.576008257 0.563278503 0.617152155 0.710553034 0.967396255 1 10.05721317 -6.081984747 2.451490174 0.958961193 0.612986735 0.929726943 0.043381738 0.057772244 0.682745945 0.007688735 0.014051652 8.28E-07 6.081984747 -0.345974458 NLILVVR ddPTM_HeLa_CUDC101_4h_R1 2 NLILVVR 7 0 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ; ; 128.75 0.023676 18843000 5627.9 4136.8 4454.4 4587.1 5238.1 4792 4627.7 4200.2 4479.1 3776.2 FALSE FALSE TRUE 4968.206093 4264.249905 4695.218338 4774.181765 4851.695799 4700.600584 4806.191939 4678.33379 4294.469602 3753.738994 1.323535307 1.136000641 1.250811083 1.271847023 1.292496843 1.252244919 1.280374567 1.246313022 1.1440512 1 11.87411262 -9.399576084 0.900888286 0.984322333 1.260820722 0.535830703 0.063259534 0.225015444 0.295664816 0.044322236 0.009028322 3.98E-10 9.399576084 0.276498389 SES(ph)PVPQNEK ddPTM_HeLa_CUDC101_4h_R1 3 SESPVPQNEK 10 0 Q9UIF8-4;Q9UIF8-2;Q9UIF8-5;Q9UIF8-3;Q9UIF8 Q9UIF8-4 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B 1 0 S(0.007)ES(0.993)PVPQNEK;S(0.001)ES(0.999)PVPQNEK;S(0.045)ES(0.955)PVPQNEK ;; 190.66 1.04E-11 55808700 17282.9 14824.2 15260.1 13856 12775.4 14752 13455.9 11534.4 15423.2 16700.2 TRUE FALSE FALSE 15257.02466 15280.91603 16085.10717 14421.10757 11832.98419 14470.63018 13974.89857 12847.42947 14787.44917 16600.86647 0.9190499 0.920489064 0.968931784 0.868696077 0.712793168 0.871679211 0.841817419 0.773901139 0.890763696 1 14.01897092 -6.081121336 4.161282411 0.957185363 0.806219427 0.624470814 0.049919064 0.101552552 3.252898401 0.007563756 0.013009863 8.30E-07 6.081121336 -0.150965936 QAQAQES(ph)EEEEESR ddPTM_HeLa_CUDC101_4h_R1 5 QAQAQESEEEEESR 14 0 H0YLQ7;Q9NVM6 H0YLQ7 DNAJC17 DnaJ homolog subfamily C member 17 1 0 QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR;QAQAQES(1)EEEEESR ;;;; 218.2 1.21E-25 231326000 12699.1 12261.31 11068.09 11166.62 11922.1 10540.5 10534.5 12054.9 11941.4 12368.5 TRUE FALSE FALSE 11210.53075 12639.06643 11666.46442 11622.04303 11042.63044 10339.45752 10940.81919 13427.18109 11449.17044 12294.93161 0.911800985 1.027989974 0.948884044 0.945271059 0.898144925 0.840952829 0.889864176 1.09209075 0.931210583 1 13.58577609 -6.080829435 3.227966922 0.962925837 0.9211813 0.043414104 0.068313677 0.577554977 11.64626681 0.01067252 0.018849155 8.30E-07 6.080829435 -0.041744537 SGTNS(ph)PPPPFSDWGR ddPTM_HeLa_CUDC101_4h_R1 1 SGTNSPPPPFSDWGR 15 0 D6RAU6;D6REP2;D6RAJ6;Q9UKT5-2;Q9UKT5 D6RAU6 FBXO4 F-box only protein 4 1 0 S(0.044)GT(0.344)NS(0.509)PPPPFS(0.102)DWGR 70.451 0.038535 7579000 2813.5 2733.5 2663.3 2379.3 2443.6 2542.5 2253.5 2118.5 2689.5 2884.9 TRUE FALSE FALSE 2483.705795 2817.715895 2807.286054 2476.338138 2263.340496 2494.006049 2340.41825 2359.661477 2578.637672 2867.740486 0.866084573 0.982556095 0.978919141 0.863515423 0.789241742 0.869676339 0.816119262 0.822829502 0.899187944 1 11.48569876 -6.079139321 4.896120985 0.941944951 0.826823866 0.654457684 0.041753399 0.140362401 6.015503673 0.008298366 0.014090313 8.33E-07 6.079139321 -0.115121086 VRLS(ph)PEPWTPETGLVTDAFK ddPTM_HeLa_CUDC101_4h_R1 1 VRLSPEPWTPETGLVTDAFK 20 1 O60488-2;O60488 O60488-2 ACSL4 Long-chain-fatty-acid--CoA ligase 4 1 0 VRLS(0.999)PEPWT(0.001)PETGLVTDAFK 78.758 0.0024926 11176000 1676.9 1271.2 1394.3 1305.5 1419.3 1369.8 1139.1 1498.9 1575.5 1340.9 TRUE FALSE FALSE 1480.336324 1310.364165 1469.680076 1358.743933 1314.601067 1343.673347 1183.035469 1669.528717 1510.557223 1332.924267 1.110592973 0.983074731 1.102598333 1.019370692 0.986253382 1.008064284 0.887548901 1.252530814 1.133265603 1 10.3803791 -6.077436987 24.99993576 1.051146458 1.019024207 0.013887326 0.096529579 410.8670518 132642.6734 0.013441052 0.022289465 8.37E-07 6.077436987 -0.032122251 KPS(ph)EDEVLNK ddPTM_HeLa_CUDC101_4h_R1 1 KPSEDEVLNK 10 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 KPS(1)EDEVLNK 95.981 0.0026471 0 2560 3165.9 2982.2 4050.1 3871.7 3808.4 4604.3 4096.8 2891.8 3019.9 TRUE FALSE FALSE 2259.920681 3263.437626 3143.426753 4215.280584 3586.092405 3735.761115 4781.889393 4563.163152 2772.59878 3001.9375 0.752820697 1.08711045 1.047132644 1.404186657 1.194592627 1.244449998 1.592934361 1.52007267 0.9236031 1 11.55167823 -6.077253508 0.771430877 0.884381007 1.493439335 0.750233754 0.127178939 0.265027565 0.302632131 0.028988401 0.081475396 8.37E-07 6.077253508 0.609058328 RPQS(ph)PGASPSQAER ddPTM_HeLa_CUDC101_4h_R1 2 RPQSPGASPSQAER 14 1 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 1 0 RPQS(1)PGASPSQAER;RPQS(1)PGASPSQAER ; 98.552 0.0045306 22820000 1057.42 889.89 978.53 783.09 772.92 747.92 633.96 701.97 848.05 1064.97 TRUE FALSE FALSE 933.4708305 917.3064561 1031.432292 815.027795 715.9032315 733.6546721 658.4120496 781.8794273 813.0930201 1058.635511 0.881767918 0.866498853 0.974303508 0.769885184 0.676250914 0.693019141 0.621944043 0.738572832 0.768057572 1 10.04799024 -6.075469638 3.033641544 0.937882027 0.679664265 0.655283812 0.070855979 0.079366469 1.427345193 0.008805161 0.015695338 8.40E-07 6.075469638 -0.258217763 DNS(ph)PPPAFKPEPPK ddPTM_HeLa_CUDC101_4h_R1 1 DNSPPPAFKPEPPK 14 1 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 DNS(1)PPPAFKPEPPK 122.5 0.0065554 22813000 3326.2 2616.9 2597.2 2324.4 2004.6 2077.1 1955.9 1981.2 2752.5 2739.7 TRUE FALSE FALSE 2936.307878 2697.523587 2737.612488 2419.199079 1856.724652 2037.482778 2031.339718 2206.7318 2639.040785 2723.404143 1.078175594 0.990496983 1.005217127 0.888299699 0.681766111 0.748138239 0.745882584 0.810284366 0.969022828 1 11.41119537 -6.074221498 2.562016248 1.032557083 0.746837912 0.883460062 0.044210002 0.060789682 0.785377322 0.006838534 0.012460381 8.43E-07 6.074221498 -0.285719172 SS(ph)PQLDPLRK ddPTM_HeLa_CUDC101_4h_R1 2 SSPQLDPLRK 10 1 Q8ND56-3;Q8ND56-2;Q8ND56 Q8ND56-3 LSM14A Protein LSM14 homolog A 1 0 S(0.069)S(0.931)PQLDPLRK;S(0.06)S(0.94)PQLDPLRK ; 92.295 0.013349 795080000 15994.3 13298.8 11729.8 11686.9 11739.6 11157.4 10499.1 8863.8 13264.4 13104.2 TRUE FALSE FALSE 14119.4724 13708.52027 12363.94847 12163.5423 10873.5931 10944.59118 10904.0538 9872.819163 12717.63582 13026.25564 1.083924099 1.052376112 0.949155983 0.933771195 0.834744335 0.840194718 0.837082743 0.75791689 0.976307864 1 13.66913482 -6.073821588 1.184263975 1.041460423 0.808649021 0.853362002 0.038552813 0.11782635 0.326498309 0.006846831 0.015262821 8.44E-07 6.073821588 -0.232811402 NLQEAEEWYK ddPTM_HeLa_CUDC101_4h_R1 2 NLQEAEEWYK 10 0 P08670;B0YJC4;B0YJC5;H7C5W5;P41219;P41219-2;F8W835 P08670 VIM;PRPH Vimentin;Peripherin 0 0 ; ; 173.24 1.39E-06 193588000 5985.8 5709.2 5934.5 5298 6639.9 5957 5233.1 5625.2 5883.1 5779.6 FALSE FALSE TRUE 5284.153598 5885.093685 6255.337021 5514.07534 6150.087806 5843.38015 5434.94242 6265.55003 5640.596128 5745.222682 0.919747395 1.024345619 1.088789307 0.959767035 1.070469875 1.017085059 0.945993344 1.090566959 0.981788947 1 12.4881471 -7.208753164 13.95328727 0.962104139 1.02589695 0.238371101 0.049578102 3.016992349 798.1432116 0.008469936 0.010373145 6.18E-08 7.208753164 0.063792811 NLQEEIDALESR ddPTM_HeLa_CUDC101_4h_R1 4 NLQEEIDALESR 12 0 Q9NQP4;E9PQY2 Q9NQP4 PFDN4 Prefoldin subunit 4 0 0 ;;; ;;; 205.12 1.51E-16 19433100 6813.1 5950.4 5268.29 5742.08 6247.19 6121.8 6119.7 5855.6 7083.5 6345.4 FALSE FALSE TRUE 6014.478746 6133.724771 5553.109693 5976.266842 5786.34724 6005.036865 6355.738879 6522.177835 6791.515132 6307.657279 0.953520218 0.972425181 0.880375938 0.9474622 0.917352828 0.952023326 1.007622735 1.034009545 1.076709598 1 12.62288856 -4.608111777 3.995479758 0.962377341 1.029011332 0.193756877 0.04880221 0.209010181 6.139906403 0.005473842 0.024327655 2.47E-05 4.608111777 0.066633991 ASEPLLS(ph)PPPFGESR ddPTM_HeLa_CUDC101_4h_R1 2 ASEPLLSPPPFGESR 15 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 ASEPLLS(1)PPPFGESR;ASEPLLS(1)PPPFGESR ; 212.43 1.12E-23 52922000 3523.7 2878.1 2701.7 2753.1 3104 2520.2 2658.5 2304.6 3274.6 3102.4 TRUE FALSE FALSE 3110.657228 2966.77085 2847.762074 2865.383318 2875.024104 2472.131384 2761.039236 2566.946348 3139.619602 3083.946787 1.008661122 0.962004553 0.92341479 0.929128651 0.932254771 0.801612854 0.895294059 0.832357536 1.018052456 1 11.59056216 -6.073727651 0.656518804 1.006280726 0.839754061 0.799266967 0.030759748 0.239191443 0.192387639 0.006223944 0.01928903 8.44E-07 6.073727651 -0.166526666 NLQTVNVDEN ddPTM_HeLa_CUDC101_4h_R1 2 NLQTVNVDEN 10 0 P62899 P62899 RPL31 60S ribosomal protein L31 0 0 ; ; 223.32 3.66E-32 28072000 7253.7 6828.3 7546.6 7543.5 8072.9 8073.8 6538.5 7495.3 8175.2 7438.1 FALSE FALSE TRUE 6403.432282 7038.671829 7954.592023 7851.156536 7477.37825 7919.805717 6790.692135 8348.534655 7838.214796 7393.85785 0.866047524 0.951962017 1.075837835 1.061848455 1.011295916 1.071133078 0.918423409 1.129117549 1.060098119 1 12.85211159 -6.856901998 6.276190064 0.935469486 1.03912166 0.148686688 0.071367033 0.179873527 9.975700653 0.01092252 0.014425783 1.39E-07 6.856901998 0.103652174 TIGGGDDS(ph)FNTFFSETGAGK ddPTM_HeLa_CUDC101_4h_R1 2 TIGGGDDSFNTFFSETGAGK 20 0 Q9BQE3;F5H5D3;A0A1W2PQM2;P0DPH8;P0DPH7;F8VVB9;F8VQQ4;F8VS66;P0DPH7-2;F8VRZ4;F8VX09;F8VWV9;Q6PEY2;F8VRK0;F8W0F6;F8VXZ7;P68363;P68363-2;Q71U36-2;Q71U36 Q9BQE3;P68363 TUBA1C;TUBA1B;TUBA1A;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain 1 0 T(0.005)IGGGDDS(0.957)FNT(0.037)FFSETGAGK;TIGGGDDS(0.982)FNT(0.016)FFS(0.002)ETGAGK ; 95.409 0.0012225 212198000 4533.7 3636.2 3954.8 3089.6 3500 3111 2730.4 2703.1 4213.1 4224.5 TRUE FALSE FALSE 4002.266559 3748.227012 4168.608451 3215.607242 3241.811973 3051.662858 2835.712443 3010.809978 4039.434235 4199.372486 0.953063005 0.89256836 0.992674135 0.765735179 0.771975333 0.726694969 0.67527052 0.716966639 0.961913774 1 12.03595805 -6.073175521 0.956931341 0.9786382 0.692476166 0.882227851 0.041217178 0.114991529 0.206556931 0.007025196 0.017455079 8.45E-07 6.073175521 -0.286162035 NIPSPGQLDPDT(ph)RIPVINLEDGTR ddPTM_HeLa_CUDC101_4h_R1 2 NIPSPGQLDPDTRIPVINLEDGTR 24 1 Q9P2D1 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 1 0 NIPS(0.011)PGQLDPDT(0.989)RIPVINLEDGTR;NIPS(0.004)PGQLDPDT(0.996)RIPVINLEDGTR ; 99.569 1.34E-05 20802000 2158.4 2001.36 2266.2 1959.69 2855.3 2574.1 2463 2536.5 2662.8 1567.87 TRUE FALSE FALSE 1905.395624 2063.019529 2388.717627 2039.614629 2644.670208 2525.003331 2557.998735 2825.244907 2553.038257 1558.54424 1.222548309 1.323683651 1.532659495 1.308666496 1.696884914 1.620103727 1.641274383 1.812746046 1.638091619 1 10.60598339 -6.068768131 0.25383158 0.937467941 2.013097945 0.19713061 0.216096248 0.725159909 0.089975909 0.081914891 0.258343913 8.54E-07 6.068768131 1.075630004 AISS(ph)DMFFGR ddPTM_HeLa_CUDC101_4h_R1 1 AISSDMFFGR 10 0 Q8N6H7;E9PMU9;H0YDN9;A0A0D9SF70;G5E9L0;Q8N6H7-3;Q8N6H7-2 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 0 AIS(0.249)S(0.751)DMFFGR 156.58 9.36E-05 28807000 1275.3 1324.3 1103.9 1671.7 2150.6 2393.5 2107.5 1285.5 1209 1343.9 TRUE FALSE FALSE 1125.811267 1365.100113 1163.580173 1739.879152 1991.954523 2347.847975 2188.786981 1431.836124 1159.164508 1335.906423 0.842732131 1.021853095 0.871004251 1.302395978 1.491088364 1.757494339 1.638428368 1.071808698 0.867698881 1 10.38360324 -6.067729395 2.800341669 0.928296484 1.517862514 0.705325417 0.174290559 0.108237647 1.671370017 0.026331743 0.047544729 8.56E-07 6.067729395 0.589566031 AAKLSEGSQPAEEEEDQET(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 AAKLSEGSQPAEEEEDQETPSR 22 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 AAKLS(0.167)EGS(0.09)QPAEEEEDQET(0.605)PS(0.138)R 65.265 0.0089808 13244000 2295.3 2321.9 2419.2 2787 3300.3 3324.4 3482 2542.8 2451.5 2716.7 TRUE FALSE FALSE 2026.248413 2393.434987 2549.98927 2900.665906 3056.843444 3260.992609 3616.301906 2832.262074 2350.448132 2700.540948 0.75031205 0.886279836 0.944251289 1.074105508 1.131937454 1.20753311 1.339102786 1.04877583 0.870361967 1 11.39903271 -6.067664337 1.515048336 0.879477946 1.205865156 0.721043051 0.087130289 0.187897991 0.852313044 0.017943726 0.036571153 8.56E-07 6.067664337 0.32638721 VS(ph)PAHS(ph)PPENGLDK ddPTM_HeLa_CUDC101_4h_R1 2 VSPAHSPPENGLDK 14 0 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 2 0 VS(1)PAHS(1)PPENGLDK;VS(1)PAHS(1)PPENGLDK ; 146.27 0.0032843 69388000 12804 9976.2 9196.9 9041.9 8552.9 8927.5 8113.2 7458.3 10814 9059.7 TRUE FALSE FALSE 11303.13453 10283.5549 9694.112233 9410.667764 7921.969607 8757.222812 8426.128842 8307.322725 10368.24234 9005.812501 1.255093255 1.141879747 1.076428388 1.044954885 0.879650737 0.97239675 0.935632275 0.922440116 1.15128339 1 13.13664073 -6.065167982 2.258717758 1.123694353 0.93144939 0.673398144 0.064387075 0.216332637 2.179782603 0.015302902 0.028519786 8.61E-07 6.065167982 -0.192244962 ATDIPASAS(ph)PPPVAGVPFFK ddPTM_HeLa_CUDC101_4h_R1 2 ATDIPASASPPPVAGVPFFK 20 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 ATDIPAS(0.102)AS(0.898)PPPVAGVPFFK;ATDIPAS(0.002)AS(0.998)PPPVAGVPFFK ; 158.98 8.48E-06 139308000 13505.2 11404.1 10688.8 10408.9 10426.3 11107.9 10090.8 8942.7 11450.2 10815.1 TRUE FALSE FALSE 11922.14093 11755.4468 11266.66886 10833.41993 9657.172621 10896.03531 10480.00554 9960.70082 10978.21791 10750.7713 1.108956799 1.093451481 1.047987027 1.007687693 0.898277188 1.013511962 0.974814294 0.926510344 1.021156306 1 13.39215255 -6.064697651 3.705614812 1.056110651 0.958361988 0.569745892 0.041029643 0.165518962 4.472653921 0.007698695 0.013474742 8.62E-07 6.064697651 -0.097748663 ALLNLPGTQTS(ph)GEAK ddPTM_HeLa_CUDC101_4h_R1 1 ALLNLPGTQTSGEAK 15 0 Q96GM8;Q96GM8-2 Q96GM8 TOE1 Target of EGR1 protein 1 1 0 ALLNLPGT(0.144)QT(0.136)S(0.72)GEAK 76.01 0.028022 9504600 2224.7 1712.8 1684.9 1759.1 1696.2 1304.2 1160.8 1499.4 1467.1 2056.6 TRUE FALSE FALSE 1963.924038 1765.569338 1775.990791 1830.843701 1571.074705 1279.324558 1205.572445 1670.085635 1406.625517 2044.367252 0.96065129 0.863626306 0.868723948 0.895555189 0.76848947 0.625780205 0.58970444 0.816920558 0.68804933 1 10.99743867 -6.064280248 0.677018615 0.985736584 0.653422876 0.200161059 0.117120344 0.271061487 0.232689238 0.014357294 0.044122748 8.62E-07 6.064280248 -0.332313707 GS(ph)PVTTREPTPR ddPTM_HeLa_CUDC101_4h_R1 1 GSPVTTREPTPR 12 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 GS(0.686)PVT(0.272)T(0.042)REPT(0.001)PR 70.68 0.030704 41125000 787.9 630.49 616.37 675.58 819.95 797.71 682.67 636.93 897.19 619.2 TRUE FALSE FALSE 695.5435564 649.9146496 649.6928266 703.1330725 759.4639221 782.4950108 709.0008106 709.4355366 860.2074485 615.5169709 1.130015238 1.055884208 1.055523824 1.14234555 1.233863497 1.271280968 1.151878574 1.152584852 1.397536525 1 9.265654825 -6.064123732 3.359885993 1.062176254 1.203202973 0 0.114914446 0.140552789 3.125206096 0.008989404 0.015906707 8.63E-07 6.064123732 0.141026719 SEDMPFS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 SEDMPFSPK 9 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SEDMPFS(1)PK;SEDMPFS(1)PK;SEDMPFS(1)PK ;; 158.56 8.38E-05 637520000 33962.3 27732.5 27009.5 24605.4 25117.1 21487.7 21322.4 20618.5 32166.9 29767.6 TRUE FALSE FALSE 29981.29068 28586.90545 28469.71527 25608.91457 23264.26157 21077.85792 22144.81211 22965.6267 30840.96677 29590.54099 1.013205223 0.966082555 0.962122162 0.865442594 0.786206024 0.712317424 0.748374696 0.776113783 1.042257618 1 14.85284845 -6.062371516 1.360284066 1.004559767 0.742582439 0.963921353 0.022260692 0.043797228 0.16027628 0.003133581 0.006645248 8.66E-07 6.062371516 -0.261977328 DYDEEEQGYDS(ph)EK ddPTM_HeLa_CUDC101_4h_R1 2 DYDEEEQGYDSEK 13 0 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 DYDEEEQGYDS(1)EK;DYDEEEQGYDS(1)EK ; 235.71 2.55E-43 64248000 6495.2 5771.5 5467 5030.5 4540.3 5050.4 4567.1 4426.2 5427.3 5847.7 TRUE FALSE FALSE 5733.842502 5949.313074 5762.562557 5235.665534 4205.371115 4954.072035 4743.254577 4930.060717 5203.584397 5812.91762 0.986396656 1.023464199 0.991337386 0.900694948 0.723452729 0.852252235 0.815985171 0.848121552 0.895176009 1 12.50504675 -6.061987557 3.665305154 0.995611812 0.812701889 0.732497736 0.047441286 0.057681093 1.53418111 0.005001395 0.008773531 8.67E-07 6.061987557 -0.182909923 NTGNGTQSSMGSPLT(ph)RPTPR ddPTM_HeLa_CUDC101_4h_R1 1 NTGNGTQSSMGSPLTRPTPR 20 1 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4I5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 NTGNGTQS(0.001)S(0.001)MGS(0.01)PLT(0.721)RPT(0.267)PR 71.969 0.0091773 18503000 694.63 511.99 449.63 656.15 992.79 896.63 721.63 338.02 665.8 504.33 TRUE FALSE FALSE 613.2065244 527.763805 473.9383579 682.9106331 919.5538596 879.5282766 749.4635108 376.4988305 638.3554422 501.3302227 1.223158901 1.052726888 0.945361633 1.362197215 1.834227856 1.754389097 1.494949789 0.750999667 1.273323277 1 8.969617399 -6.060749931 6.268797897 1.093879022 1.496166823 0.262284994 0.28604774 0.2104098 17.01195351 0.042750714 0.071859965 8.69E-07 6.060749931 0.402287801 TSRDTS(ph)PSSGSAVSSSK ddPTM_HeLa_CUDC101_4h_R1 2 TSRDTSPSSGSAVSSSK 17 1 Q8NEY8;F8W6A0;F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;F8WF16;B7Z8L1;Q8NEY8-5;Q8NEY8-6;Q8NEY8-7 Q8NEY8 PPHLN1 Periphilin-1 1 0 TSRDT(0.014)S(0.877)PS(0.083)S(0.019)GS(0.006)AVSSSK;T(0.029)S(0.025)RDT(0.428)S(0.491)PS(0.01)S(0.01)GS(0.006)AVSSSK ; 87.802 0.0045629 8561000 1455.91 2486.3 2630.2 2685.9 7232.8 3430.2 4452.1 6665.5 4377.7 1921.37 TRUE FALSE FALSE 1285.250437 2562.899956 2772.396568 2795.442611 6699.250754 3364.77465 4623.818988 7424.273577 4197.249353 1909.941606 0.672926561 1.341873463 1.451560906 1.463627266 3.507568364 1.761715981 2.420921652 3.887173071 2.197579937 1 10.89931281 -6.060170267 0.897268224 0.842603548 2.937427742 0.44410647 0.741140936 0.248127776 0.389517043 0.104875548 0.273186204 8.71E-07 6.060170267 2.094824194 S(ph)SPPPGYVPER ddPTM_HeLa_CUDC101_4h_R1 2 SSPPPGYVPER 11 0 J3KRN4;J3QRB6;Q99759;Q99759-2 J3KRN4 MAP3K3 Mitogen-activated protein kinase kinase kinase 3 1 0 S(0.988)S(0.012)PPPGYVPER;S(0.907)S(0.093)PPPGYVPER ; 171.67 7.67E-07 58955000 5503.1 4884.2 5004.4 4492.5 4764.1 4738.7 4174.3 3900.6 4996.8 5336.2 TRUE FALSE FALSE 4858.03496 5034.676413 5274.953001 4675.723568 4412.661834 4648.317193 4335.304149 4344.628537 4790.829789 5304.460045 0.915839674 0.949140227 0.994437314 0.881470221 0.831877665 0.876303555 0.817294147 0.819051986 0.903170115 1 12.37299019 -6.059943045 3.900369359 0.960423029 0.838661101 0.739175888 0.032509151 0.092789545 2.819929736 0.00552585 0.009638715 8.71E-07 6.059943045 -0.121761927 VEHES(ph)FEK ddPTM_HeLa_CUDC101_4h_R1 1 VEHESFEK 8 0 K7EMC6;A0A0A0MSA9;A0A0C4DG49;P15151-3;P15151-2;P15151-4;P15151 K7EMC6 PVR Poliovirus receptor 1 0 VEHES(1)FEK 91.906 0.026815 462480000 406.28 839.15 383.07 1229.8 1833 1927.9 1651.7 735.88 1763.7 1107.7 TRUE FALSE FALSE 358.6564743 865.0032169 403.7799229 1279.95656 1697.783242 1891.12852 1715.406622 819.6496047 1690.999539 1101.111351 0.325722257 0.785572881 0.366702171 1.162422455 1.541881518 1.71747255 1.557886603 0.744383939 1.53572074 1 10.10474466 -6.05875279 4.88038096 0.66261268 1.420332697 0.286285259 0.409158378 0.131135802 6.462026803 0.052875589 0.090380048 8.73E-07 6.05875279 0.757720016 S(ph)DISPLT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 S(1)DISPLT(1)PR;S(1)DIS(0.001)PLT(0.999)PR ; 121.21 0.01997 31667000 11752.9 8798.1 7563.7 8002.8 7972.2 8484.5 7367.9 6143.8 10063.7 6975.9 TRUE FALSE FALSE 10375.24288 9069.159033 7972.616501 8329.188775 7384.106689 8322.672299 7652.082371 6843.185358 9648.870026 6934.407037 1.496197559 1.307849249 1.149718564 1.201139294 1.064850484 1.200199564 1.103494838 0.986845064 1.391448465 1 12.75955681 -6.057138753 1.630967971 1.243260906 1.095472256 0.275963362 0.134699585 0.688827845 3.624080661 0.031102171 0.062368888 8.77E-07 6.057138753 -0.14778865 Y(ph)VESDDEKPLDDETVNEDASNENSENDITMQSLPK ddPTM_HeLa_CUDC101_4h_R1 1 YVESDDEKPLDDETVNEDASNENSENDITMQSLPK 35 1 P46100-4;P46100;A0A096LNL9;P46100-6;A0A096LNW1;A0A096LNL6;A0A096LNN3;A0A096LNL7;A0A087WWG0 P46100-4 ATRX Transcriptional regulator ATRX 1 0 Y(0.727)VES(0.224)DDEKPLDDET(0.042)VNEDAS(0.006)NENS(0.001)ENDITMQSLPK 61.112 0.00021663 6328800 1404.6 1206.8 1300.6 1082.9 1184.9 1291 1007.5 958.12 1337.3 1199.3 TRUE FALSE FALSE 1239.954917 1243.980078 1370.91437 1127.065343 1097.492288 1266.376326 1046.359612 1067.188508 1282.175928 1192.16651 1.040085346 1.043461687 1.149935314 0.945392555 0.92058641 1.062247861 0.877695862 0.895167327 1.07550071 1 10.21937004 -6.056452797 24.99885545 1.0313156 0.942063039 0.456384482 0.062029059 247.0227098 109388.0819 0.009206461 0.015267221 8.78E-07 6.056452797 -0.089252562 GGEPGPLLTASTFS(ph)DPAGPR ddPTM_HeLa_CUDC101_4h_R1 1 GGEPGPLLTASTFSDPAGPR 20 0 E5RFT3 E5RFT3 IKBKB 1 0 GGEPGPLLT(0.021)AS(0.021)T(0.021)FS(0.936)DPAGPR 61.495 0.022612 62527000 1886.2 3925.2 2158 3761.7 5565.7 5299.5 4179.6 3188.7 4211.5 3717 TRUE FALSE FALSE 1665.102495 4046.130759 2274.668008 3915.118385 5155.129399 5198.420867 4340.808572 3551.688719 4037.900187 3694.891119 0.450649949 1.095060891 0.615625179 1.059603182 1.395204685 1.40692126 1.174813664 0.961243134 1.092833336 1 11.85131614 -6.055406687 4.690962222 0.758736967 1.24259668 0.347526946 0.231055802 0.149285153 6.905367748 0.038305621 0.065783955 8.80E-07 6.055406687 0.483859714 GGVT(ph)GSPEASISGSK ddPTM_HeLa_CUDC101_4h_R1 1 GGVTGSPEASISGSK 15 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GGVT(0.819)GS(0.166)PEAS(0.014)ISGSK 199.33 1.03E-15 552480000 5595.8 4435 4115.2 4585.8 3845.7 4592 3897.8 3208.3 4430.3 5096.3 TRUE FALSE FALSE 4939.868807 4571.637093 4337.68016 4772.828746 3562.010373 4504.415251 4048.139452 3573.519904 4247.681159 5065.986981 0.975104915 0.902417853 0.856235947 0.942132059 0.703122686 0.889148604 0.799082087 0.705394609 0.838470603 1 12.30662765 -6.053553711 0.412594459 1.005755222 0.722618202 0.333151541 0.079565181 0.645252179 0.190393003 0.020234235 0.074958745 8.84E-07 6.053553711 -0.28313702 NLVPGESVYGEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 NLVPGESVYGEKR 13 1 M0R0P1;M0R299;M0QXL5;M0R2Q4;P22087;M0R2U2;M0R1H0;M0R2B0 M0R0P1 FBL rRNA 2-O-methyltransferase fibrillarin 0 1 ; NLVPGESVYGEK(1)R;NLVPGESVYGEK(1)R 188.15 1.93E-08 2796200 1112.91 841.96 771.87 904.97 1300.93 1011.99 1081.11 1271.38 1099.02 828.66 FALSE TRUE FALSE 982.4563769 867.8997896 813.599627 941.8785882 1204.962986 992.6879768 1122.808775 1416.10876 1053.71793 823.7310935 1.192690654 1.053620285 0.987700517 1.143429689 1.462811099 1.205111698 1.363076839 1.719139621 1.279201354 1 9.686029637 -1 0.395977498 1.071588568 10.6758858 0.651780758 0.127203837 24.99053635 0.296905831 0.029467089 188.7496649 0.1 1 9.604297231 VGS(ph)DPVLMR ddPTM_HeLa_CUDC101_4h_R1 2 VGSDPVLMR 9 0 A0A2R8Y8D8;A0A2R8Y5E1;A0A2R8YFD4;Q13191-3;Q13191-2;Q13191;A0A2R8Y582 A0A2R8Y8D8 CBLB E3 ubiquitin-protein ligase CBL-B 1 0 VGS(1)DPVLMR;VGS(1)DPVLMR ; 139.15 0.0019776 22467000 11435.2 10329.5 9356.7 10782.3 12481 13000.5 12226.5 10233.6 10109.2 9493.8 TRUE FALSE FALSE 10094.78319 10647.73965 9862.551504 11222.0488 11560.3015 12752.53712 12698.0802 11398.55166 9692.494497 9437.330455 1.069665118 1.128257583 1.045057344 1.189112626 1.224954615 1.351286488 1.345516114 1.207815252 1.027037735 1 13.20416311 -6.052940455 0.952152228 1.033697169 1.312757217 0.816426272 0.05141562 0.160243708 0.284542315 0.009432563 0.023872562 8.85E-07 6.052940455 0.279060048 KANLQQAIVT(ph)PLKPVDNTYYK ddPTM_HeLa_CUDC101_4h_R1 1 KANLQQAIVTPLKPVDNTYYK 21 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 KANLQQAIVT(0.99)PLKPVDNT(0.006)Y(0.002)Y(0.001)K 53.768 0.031052 16706000 2244.1 2099.9 1943.6 1832.5 2149.1 1874.6 1708.8 442.27 2044.4 2248.9 TRUE FALSE FALSE 1981.05 2164.59543 2048.676895 1907.237271 1990.565175 1838.845128 1774.708988 492.6162291 1960.128967 2235.523443 0.886168296 0.968272302 0.91641933 0.853150199 0.890424648 0.822556853 0.793867313 0.220358337 0.876809846 1 11.12639696 -4.226798229 1.907754312 0.929385616 2.11E-23 0.933352232 0.054000156 0.176166696 0.613113496 0.008968596 0.297208104 5.93E-05 4.226798229 -0.929385616 down MVSQSQPGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 3 MVSQSQPGSR 10 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 MVSQSQPGS(1)R;MVSQSQPGS(1)R;MVSQSQPGS(1)R ;; 150.14 0.00047846 111750000 5788.3 4506.6 4359.4 4698.1 4761.4 4065 4308.8 3867.4 5099.1 4876.5 TRUE FALSE FALSE 5109.804248 4645.443004 4595.08235 4889.708825 4410.161008 3987.466898 4474.991859 4307.649183 4888.91294 4847.494361 1.054112469 0.958318393 0.947929385 1.008708512 0.909781565 0.822583092 0.923155661 0.888634181 1.008544327 1 12.2430235 -6.051315058 0.894735035 1.022628114 0.877596234 0.624677714 0.039975868 0.26829631 0.418368935 0.007801872 0.020503777 8.89E-07 6.051315058 -0.145031879 NLYIISVK ddPTM_HeLa_CUDC101_4h_R1 2 NLYIISVK 8 0 C9JD32;B9ZVP7;J3KT29;P62829 C9JD32 RPL23 60S ribosomal protein L23 0 0 ; ; 160.88 0.015953 10344500 5363.7 5533.7 5431.6 5821.1 6510.1 6062.4 5939 5163.8 5578.4 5798 FALSE FALSE TRUE 4734.975217 5704.186738 5725.248726 6058.509619 6029.862893 5946.769821 6168.069219 5751.626119 5348.455991 5763.513238 0.821543219 0.989706539 0.993360905 1.051183431 1.046213072 1.031795985 1.0701926 0.997937522 0.927985375 1 12.49273278 -6.864793815 2.661101186 0.915820681 1.037382529 0.540348468 0.04667187 0.207592356 2.994674253 0.011480858 0.015620395 1.37E-07 6.864793815 0.121561848 STST(ph)PNVHMVSTTLPVDSR ddPTM_HeLa_CUDC101_4h_R1 1 STSTPNVHMVSTTLPVDSR 19 0 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 S(0.001)T(0.001)S(0.474)T(0.523)PNVHMVSTTLPVDSR 117.27 0.00044638 11505000 1036.5 653.9 893.24 1025.6 1304.7 1304 941.81 1101.2 1356.4 1040.3 TRUE FALSE FALSE 915.0030412 674.0458839 941.5312563 1067.428401 1208.45488 1279.128373 978.1359272 1226.556157 1300.488618 1034.112249 0.884819846 0.65181114 0.910472975 1.032217152 1.168591593 1.236933779 0.945870168 1.186095762 1.257589414 1 10.01417708 -6.049239844 3.524248377 0.915652026 1.127101837 0.244346857 0.156591665 0.189892766 4.773383109 0.018770628 0.033248121 8.93E-07 6.049239844 0.211449811 AEAPAGPALGLPS(ph)PEAESGVDR ddPTM_HeLa_CUDC101_4h_R1 4 AEAPAGPALGLPSPEAESGVDR 22 0 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 0 AEAPAGPALGLPS(0.985)PEAES(0.015)GVDR;AEAPAGPALGLPS(0.993)PEAES(0.007)GVDR;AEAPAGPALGLPS(0.944)PEAES(0.056)GVDR;AEAPAGPALGLPS(0.999)PEAES(0.001)GVDR ;;; 196.36 6.71E-19 111715000 5242.78 3880.48 3760.91 3867.81 3720.41 4015.97 3623.02 2975.89 4088.9 3716.41 TRUE FALSE FALSE 4628.229276 4000.032989 3964.236171 4025.55601 3445.962766 3939.372063 3762.761095 3314.653289 3920.353811 3694.304628 1.252801201 1.082756673 1.073066942 1.089665422 0.932777102 1.066336553 1.018530271 0.897233342 1.061188561 1 11.85108712 -6.046849387 1.675790185 1.118191496 0.986933854 0.308839594 0.076738799 0.405738934 2.256331276 0.016515176 0.033044982 8.98E-07 6.046849387 -0.131257642 AKSPT(ph)PESSTIASYVTLR ddPTM_HeLa_CUDC101_4h_R1 1 AKSPTPESSTIASYVTLR 18 1 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;Q9HAU0-5;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 AKS(0.299)PT(0.637)PES(0.049)S(0.014)TIASYVTLR 186.89 4.77E-10 182860000 1678 1568.3 1401.4 1303 1429 1386.3 1246.1 1291.6 1565.2 1310.5 TRUE FALSE FALSE 1481.307384 1616.617464 1477.163923 1356.141972 1323.585517 1359.858637 1294.162494 1438.630523 1500.681794 1302.705088 1.137101097 1.24096964 1.133920438 1.04101994 1.016028516 1.043872976 0.99344242 1.104340911 1.151973542 1 10.3472948 -6.044163605 20.79540956 1.087139192 1.035463639 0.191609477 0.068632003 135.5591165 63830.79844 0.012562483 0.020835383 9.03E-07 6.044163605 -0.051675554 GAGDGS(ph)DEEVDGK ddPTM_HeLa_CUDC101_4h_R1 4 GAGDGSDEEVDGK 13 0 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 GAGDGS(1)DEEVDGK;GAGDGS(1)DEEVDGK;GAGDGS(1)DEEVDGK;GAGDGS(1)DEEVDGK ;;; 218.16 1.72E-25 783969000 25559.9 20117.3 20199.8 19922.6 19914.7 20440.9 19561.8 15183.8 21605.3 21210.3 TRUE FALSE FALSE 22563.80727 20737.09017 21291.86229 20735.12974 18445.63226 20051.02389 20316.30518 16912.26242 20714.72039 21084.14019 1.070179152 0.983539759 1.009852054 0.983446778 0.874858168 0.951000311 0.963582342 0.802131947 0.982478783 1 14.36387057 -6.04403102 1.147356684 1.031424688 0.899758376 0.499971227 0.050028797 0.260399082 0.677282787 0.008300305 0.019148758 9.04E-07 6.04403102 -0.131666312 NMDDDRLSR ddPTM_HeLa_CUDC101_4h_R1 1 NMDDDRLSR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 91.087 0.033254 5750300 789.17 1031.4 1177.7 1222.2 1308.4 1093 1100.3 1590.4 1159.5 1151 FALSE FALSE TRUE 696.6646889 1063.176211 1241.370024 1272.046599 1211.881939 1072.152846 1142.73894 1771.444707 1111.704919 1144.153801 0.60889077 0.929224909 1.084967793 1.111779376 1.059194959 0.937070563 0.998763399 1.548257504 0.971639406 1 10.16006528 -6.878609678 3.669031617 0.813553409 1.10652522 0.289177684 0.184773543 0.216860848 5.625201431 0.03371552 0.045131696 1.32E-07 6.878609678 0.292971812 NMFHPMDFEDDPLVLNEIREDLR ddPTM_HeLa_CUDC101_4h_R1 1 NMFHPMDFEDDPLVLNEIREDLR 23 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 0 0 64.2 0.0036191 4445500 582.31 540.52 406.82 452.06 787.94 518.4 594.39 696.6 661.01 474.87 FALSE FALSE TRUE 514.0525045 557.1727805 428.8139198 470.4969608 729.815236 508.5123837 617.3158214 775.8981282 633.762888 472.0454521 1.088989423 1.180337143 0.90841659 0.996719614 1.546069839 1.077253009 1.307746571 1.643693684 1.342588696 1 8.88278197 -1 0.407378603 1.034967365 10.69178122 0.376378167 0.183822618 35.03998193 0.409117583 0.035773503 276.0756586 0.1 1 9.656813858 LSVGEQPDVTHDPYEFLQS(ph)PEPAASAK ddPTM_HeLa_CUDC101_4h_R1 3 LSVGEQPDVTHDPYEFLQSPEPAASAK 27 0 Q9H8M2-6;Q9H8M2-2;Q9H8M2-3;Q9H8M2-1;Q9H8M2 Q9H8M2-6;Q9H8M2 BRD9 Bromodomain-containing protein 9 1 0 LSVGEQPDVTHDPY(0.003)EFLQS(0.996)PEPAASAK;LSVGEQPDVTHDPYEFLQS(0.999)PEPAAS(0.001)AK;LSVGEQPDVTHDPYEFLQS(0.999)PEPAAS(0.001)AK ;; 129.05 3.39E-11 87942000 6305 5088.5 4852.8 4927.3 5876.6 4408.25 4111.7 3869.52 7004.2 6736.9 TRUE FALSE FALSE 5565.937458 5245.270654 5115.157047 5128.256592 5443.094926 4324.169976 4270.289646 4310.010516 6715.483911 6696.828619 0.831130342 0.783246959 0.763817822 0.765773903 0.812786953 0.645704142 0.637658493 0.643589789 1.002785691 1 12.70926233 -6.042540626 0.065752723 1.501369637 1.54E-10 0.922026857 0.03513877 10.24236327 0.238831505 2.188840298 3.24521411 9.07E-07 6.042540626 -1.501369637 TDASS(ph)ASSFLDSDELER ddPTM_HeLa_CUDC101_4h_R1 1 TDASSASSFLDSDELER 17 0 Q14498-2;Q14498;G3XAC6;Q14498-3;H0Y4X3;A0A0U1RQW2;A0A0U1RQH7 Q14498-2 RBM39 RNA-binding protein 39 1 0 T(0.001)DAS(0.204)S(0.789)AS(0.004)S(0.001)FLDSDELER 75.998 0.017822 12554000 355.93 499.33 438.68 337.83 551.89 474.27 415.96 520.09 332.14 399.98 TRUE FALSE FALSE 314.208425 514.7137654 462.3963677 351.6081676 511.1781742 465.2240899 432.0037165 579.2949433 318.4490486 397.6009012 0.790260847 1.29454879 1.162966096 0.884324373 1.285656478 1.170078057 1.086525999 1.456975931 0.800926375 1 8.635177217 -6.042385449 0.539022406 0.910412076 1.292732698 0.381944351 0.166816596 0.891860258 0.461169081 0.044239501 0.155891765 9.07E-07 6.042385449 0.382320622 S(ph)AEEGELAESK ddPTM_HeLa_CUDC101_4h_R1 2 SAEEGELAESK 11 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(1)AEEGELAESK;S(1)AEEGELAESK ; 166.45 2.92E-05 28795000 2738 2048.65 1946.62 2180.33 1981.6 1822.41 2051.71 1466.68 2121.9 2216.05 TRUE FALSE FALSE 2417.055791 2111.766478 2051.860165 2269.253282 1835.421316 1787.650566 2130.845142 1633.640923 2034.434384 2202.868836 1.097230916 0.958643767 0.931449087 1.030135451 0.833195915 0.811510216 0.967304593 0.741597001 0.923538592 1 11.10516788 -6.041547486 0.871351803 1.042441824 0.834284725 0.373401248 0.080746146 0.330170523 0.48646612 0.013420829 0.036127545 9.09E-07 6.041547486 -0.2081571 S(ph)PGHMVILDQTK ddPTM_HeLa_CUDC101_4h_R1 5 SPGHMVILDQTK 12 0 Q9NWH9;Q9NWH9-3;H7C3F4 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK;S(1)PGHMVILDQTK ;;;; 177.36 3.07E-07 376313200 20187 16685 15198.4 14993.6 14244.1 15508.2 14946.6 11103.3 13076.2 15265.1 TRUE FALSE FALSE 17820.71046 17199.04507 16020.07148 15605.10382 13193.34112 15212.40692 15523.09537 12367.25479 12537.1935 15174.30251 1.174400633 1.133432332 1.055736926 1.028390189 0.869452887 1.002511115 1.022985759 0.815013065 0.826212177 1 13.88934258 -6.041118355 3.05966538 1.087216828 0.939688141 0.111356654 0.108966287 0.204696705 3.847516122 0.01310132 0.023661929 9.10E-07 6.041118355 -0.147528687 NMSVIAHVDHGK ddPTM_HeLa_CUDC101_4h_R1 2 NMSVIAHVDHGK 12 0 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 105.13 0.0028864 4283900 7578.1 4220.8 4168.7 3543.2 7573.9 6800.3 6361.7 6189.9 6894.4 5765.2 FALSE FALSE TRUE 6689.806606 4350.837845 4394.072532 3687.707011 7015.188486 6670.595608 6607.0729 6894.533196 6610.209914 5730.908334 1.167320469 0.759188176 0.766732301 0.643476879 1.224097137 1.163968296 1.152884066 1.203043705 1.153431451 1 12.48454811 AEDGATPS(ph)PSNET(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 AEDGAT(0.033)PS(0.947)PS(0.081)NET(0.939)PK 134.93 0.0033908 18370000 12648 10337 9652.9 9546.4 9497.4 10220 8944 7805.4 10773 9694.2 TRUE FALSE FALSE 11165.42061 10655.47072 10174.76497 9935.743455 8796.795723 10025.07053 9288.973076 8693.935185 10328.93238 9636.538467 1.158654703 1.105736334 1.055852681 1.031049011 0.912858466 1.040318633 0.963932548 0.902184453 1.071850895 1 13.23429929 -6.041097381 2.863372421 1.078420572 0.96155696 0.556424502 0.051506653 0.215881818 3.535462223 0.010556482 0.019219141 9.10E-07 6.041097381 -0.116863612 LGIAVIHGEAQDAES(ph)DLVDGRHSPPMVR ddPTM_HeLa_CUDC101_4h_R1 1 LGIAVIHGEAQDAESDLVDGRHSPPMVR 28 1 I3L0S1;E7EPA1;O60256-4;O60256-3;O60256-2;O60256;C9K0K7 I3L0S1 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 0 LGIAVIHGEAQDAES(0.588)DLVDGRHS(0.412)PPMVR 67.668 0.00010031 32514000 2012.1 1590.5 1867.9 1591.9 1709.7 1563.4 1549.4 1740.5 1733.1 1685.3 TRUE FALSE FALSE 1776.244688 1639.50142 1968.884324 1656.824563 1583.578837 1533.58075 1609.160877 1938.631485 1661.660884 1675.275761 1.060270034 0.9786457 1.175259841 0.988986173 0.945264579 0.915419888 0.960534925 1.157201417 0.991873054 1 10.71018288 -6.039564867 24.9975176 1.03672758 0.98409159 0.075693648 0.079514182 973.6831613 615182.2927 0.011541514 0.019141304 9.13E-07 6.039564867 -0.052635991 S(ph)AVLLVDETATTPIFANR ddPTM_HeLa_CUDC101_4h_R1 3 SAVLLVDETATTPIFANR 18 0 Q12802-4;Q12802;Q12802-2;A0A087WTD7;A8MYJ1;A0A087WY36;A0A087WX73 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 S(1)AVLLVDETATTPIFANR;S(1)AVLLVDETATTPIFANR;S(1)AVLLVDETATTPIFANR ;; 212.32 3.62E-24 155276500 3688.61 2905.07 2885.76 2688.42 2896.95 2954.36 2880.99 1857.19 2733.67 2656.38 TRUE FALSE FALSE 3256.236727 2994.571763 3041.772915 2798.065388 2683.24777 2898.010505 2992.110749 2068.605003 2620.986966 2640.579734 1.233152207 1.134058451 1.15193375 1.05964056 1.016158587 1.097490247 1.133126454 0.783390472 0.992580126 1 11.36663899 -6.039378773 4.29865408 1.117825991 1.023812974 0.128586266 0.109363039 0.363614854 14.90162303 0.017927379 0.03127934 9.13E-07 6.039378773 -0.094013018 TDANESSSS(ph)PEIR ddPTM_HeLa_CUDC101_4h_R1 1 TDANESSSSPEIR 13 0 Q96JM7-2;Q96JM7 Q96JM7-2 L3MBTL3 Lethal(3)malignant brain tumor-like protein 3 1 0 TDANES(0.001)S(0.002)S(0.042)S(0.955)PEIR 125.33 0.0016546 12776000 1841.2 1427.1 1852.1 1410.2 1555.2 1549.2 1170.3 1503.5 1501.5 1621.5 TRUE FALSE FALSE 1625.377327 1471.067259 1952.230128 1467.714051 1440.475994 1519.651591 1215.438863 1674.652363 1439.607534 1611.855246 1.008389141 0.912654696 1.211169634 0.910574355 0.89367578 0.942796566 0.754062045 1.038959526 0.893136985 1 10.65450647 -6.038254447 24.9996838 1.012106006 0.899349258 0.178148701 0.103126208 532.6544882 348094.5954 0.012983305 0.021533565 9.16E-07 6.038254447 -0.112756748 SNSLPHS(ph)AVS(ph)NAGS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 SNSLPHSAVSNAGSK 15 0 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 3 0 S(0.007)NS(0.007)LPHS(0.993)AVS(0.993)NAGS(1)K 101.97 0.0074127 12126000 1868 3257.5 1908.5 3026 4579.1 4086 4249 2288.4 3954 2697.6 TRUE FALSE FALSE 1649.035872 3357.859714 2011.679283 3149.413359 4241.308916 4008.066358 4412.885353 2548.902206 3791.014446 2681.554555 0.614955183 1.252206377 0.750191444 1.174472976 1.581660499 1.494680147 1.645644443 0.950531549 1.41373758 1 11.38885389 -6.037207816 3.802678865 0.84932994 1.438221749 0.221030232 0.296098219 0.129457718 3.958611671 0.037401174 0.066102122 9.18E-07 6.037207816 0.588891809 NKPGPNIES(ph)GNEDDDASFK ddPTM_HeLa_CUDC101_4h_R1 7 NKPGPNIESGNEDDDASFK 19 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(0.807)GNEDDDAS(0.193)FK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(0.998)GNEDDDAS(0.002)FK;NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(1)GNEDDDASFK ;;;;;; 131.33 2.26E-05 5007403000 22121.4 19696.8 20696.2 18691.5 20016.3 19114.2 18020.2 19697 19846.1 21206 TRUE FALSE FALSE 19528.36303 20303.63506 21815.09917 19453.82016 18539.73743 18749.62848 18715.24515 21939.22686 19028.03536 21079.86577 0.926398832 0.963176677 1.034878467 0.92286262 0.879499786 0.88945673 0.887825632 1.040766915 0.902663972 1 14.36357806 -6.036127038 24.9289277 0.969353529 0.917018226 0.117489441 0.05467787 722.2503686 498377.2063 0.007936603 0.013164704 9.20E-07 6.036127038 -0.052335303 SPS(ph)KPLPEVTDEYKNDVK ddPTM_HeLa_CUDC101_4h_R1 1 SPSKPLPEVTDEYKNDVK 18 2 P05455;E7ERC4;E9PFL9;E9PGX9 P05455 SSB Lupus La protein 1 0 S(0.139)PS(0.861)KPLPEVTDEYKNDVK 102.39 0.00065784 85352000 4734.2 3863.2 3855 3935 3625.2 3772.5 3296.2 3173.1 4232.1 4503.3 TRUE FALSE FALSE 4179.264253 3982.220613 4063.412961 4095.486309 3357.776218 3700.545848 3423.335538 3534.312878 4057.651047 4476.514171 0.933597905 0.889580701 0.907718105 0.914882909 0.750087253 0.82665791 0.764732425 0.789523442 0.906430962 1 12.12816004 -6.034209074 0.326924182 1.000136569 0.714888064 0.674461657 0.044150998 0.648756332 0.121181552 0.018749356 0.068487273 9.24E-07 6.034209074 -0.285248505 NMVQTAVVPVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 NMVQTAVVPVKK 12 1 A0A0A0MT09;Q12972-2;Q12972 A0A0A0MT09 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay 0 1 NMVQTAVVPVK(1)K 152.14 3.76E-12 0 387.8 292.53 283.86 224.37 341.25 266.9 191.11 389.29 255 392.56 FALSE TRUE FALSE 342.3426719 301.5425026 299.2063302 233.5207784 316.0766674 261.8093272 198.4811767 433.6052 244.4887921 390.2250357 0.87729551 0.772740022 0.766753291 0.598425926 0.80998562 0.670918837 0.508632606 1.111167046 0.62653282 1 8.60816253 -7.578302193 0.88088045 0.971906658 0.723504025 0 0.185967909 0.41043188 0.6646722 0.035755833 0.035472826 2.64E-08 7.578302193 -0.248402633 ETAAGGLTLKEERS(ph)PQTLAPVGEDAMK ddPTM_HeLa_CUDC101_4h_R1 2 ETAAGGLTLKEERSPQTLAPVGEDAMK 27 2 Q92797 Q92797 SYMPK Symplekin 1 0 ET(0.013)AAGGLT(0.047)LKEERS(0.84)PQT(0.1)LAPVGEDAMK;ET(0.003)AAGGLT(0.008)LKEERS(0.809)PQT(0.18)LAPVGEDAMK ; 62.1 0.0011042 80450000 2997.1 2871 2839.8 3032.1 4174.4 3521.5 3435.7 2973.7 2828.5 3099.3 TRUE FALSE FALSE 2645.784481 2959.452107 2993.328178 3155.762144 3866.462829 3454.333255 3568.2161 3312.213988 2711.908033 3080.865226 0.858779689 0.960591227 0.971586862 1.024310352 1.254992525 1.1212218 1.158186366 1.07509214 0.880242346 1 11.58911986 -6.032391667 3.303896227 0.937043544 1.150724527 0.75243527 0.058515828 0.105639168 2.360554917 0.010237204 0.018401393 9.28E-07 6.032391667 0.213680984 NNASTDYDLSDK ddPTM_HeLa_CUDC101_4h_R1 2 NNASTDYDLSDK 12 0 B5MCW2;G5E9G0;P39023 B5MCW2 RPL3 60S ribosomal protein L3 0 0 ; ; 171.26 4.71E-06 53493000 6028.4 5437.7 5661.3 5591.5 5509.2 5072.8 5677 6301.7 5680.2 5557.6 FALSE FALSE TRUE 5321.76009 5605.229092 5967.367002 5819.545539 5102.797292 4976.044792 5895.963792 7019.060056 5446.059752 5524.543148 0.963294149 1.014604998 1.080155742 1.053398513 0.923659596 0.90071607 1.067231015 1.270523167 0.985793686 1 12.43163945 -4.334163224 3.279685789 0.987907344 1.289092444 0.7256752 0.051769958 0.111295784 1.926932907 0.007564424 0.075214864 4.63E-05 4.334163224 0.3011851 IT(ph)PHTS(ph)PAPR ddPTM_HeLa_CUDC101_4h_R1 1 ITPHTSPAPR 10 0 A0A0C4DFZ9;Q58A45-2;Q58A45-4;Q58A45-3;Q58A45 A0A0C4DFZ9 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit PAN3 2 0 IT(1)PHT(0.285)S(0.715)PAPR 78.529 0.0021699 0 2452.6 1867.9 2074.1 1734.1 1529.7 1412.1 1508.5 1599.9 1771.9 2120.1 TRUE FALSE FALSE 2165.109946 1925.447785 2186.23212 1804.824093 1416.857079 1385.166545 1566.68335 1782.026149 1698.861532 2107.489551 1.027340774 0.91362151 1.037363207 0.856385785 0.672296135 0.657259033 0.743388431 0.845568201 0.80610674 1 11.04130976 -6.032348155 3.479485313 1.005506212 0.726408709 0.583169842 0.085366812 0.067502266 1.694192834 0.008801 0.015733486 9.28E-07 6.032348155 -0.279097504 QEPES(ph)EEEEEEK ddPTM_HeLa_CUDC101_4h_R1 1 QEPESEEEEEEK 12 0 P49756 P49756 RBM25 RNA-binding protein 25 1 0 QEPES(1)EEEEEEK 116.78 0.00036468 0 1049.1 775.8 730.77 691.15 785.73 653.49 663.96 550.17 804.32 741.87 TRUE FALSE FALSE 926.1260883 799.7014785 770.2776367 719.3380844 727.7682633 641.025767 689.5691596 612.7991289 771.1655892 737.4573242 1.255836857 1.084403737 1.044504694 0.975430117 0.98686153 0.86923778 0.935063138 0.830962157 1.045708767 1 9.526415755 -6.030862596 1.137958309 1.120306417 0.886403635 0.606711602 0.070738615 0.301995966 0.772578317 0.016933552 0.039574987 9.31E-07 6.030862596 -0.233902782 VDDSTGTVIS(ph)DVEEDAGELSR ddPTM_HeLa_CUDC101_4h_R1 3 VDDSTGTVISDVEEDAGELSR 21 0 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R403 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 1 0 VDDST(0.004)GT(0.019)VIS(0.977)DVEEDAGELSR;VDDSTGTVIS(1)DVEEDAGELSR;VDDSTGTVIS(1)DVEEDAGELSR ;; 199.36 6.96E-19 28820200 4851.52 4039.7 3353.8 3458.85 4125.56 3383.05 3048.08 3100.97 4271.34 3868.43 TRUE FALSE FALSE 4282.83218 4164.158369 3535.116573 3599.916853 3821.225658 3318.523958 3165.645467 3453.97189 4095.273557 3845.420406 1.113748752 1.082887676 0.919305615 0.936156902 0.993708166 0.862980795 0.823224806 0.898203974 1.064974209 1 11.90892562 -6.028675545 0.910223172 1.055120915 0.862864961 0.672169914 0.053021205 0.297563573 0.480094149 0.01151516 0.030510524 9.36E-07 6.028675545 -0.192255953 ASTSSSSSS(ph)SSNQQTEKETNTPK ddPTM_HeLa_CUDC101_4h_R1 1 ASTSSSSSSSSNQQTEKETNTPK 23 1 C9J2P0;P51965-3;P51965 C9J2P0 UBE2E1 Ubiquitin-conjugating enzyme E2 E1 1 0 ASTSS(0.001)S(0.003)S(0.009)S(0.028)S(0.37)S(0.37)S(0.034)NQQT(0.005)EKET(0.056)NT(0.124)PK 74.324 0.00081207 47159000 5588.1 4209.4 3802.5 3976 5119 3900.8 2885.6 1564 5380.5 5079.9 TRUE FALSE FALSE 4933.071389 4339.086625 4008.074652 4138.158466 4741.381568 3826.398739 2996.898559 1742.039438 5158.713513 5049.684529 0.976906847 0.859278753 0.793727733 0.819488513 0.938946095 0.757750057 0.593482334 0.344979855 1.021591247 1 12.30197755 -4.226252353 0.5593806 0.974885417 4.60E-36 0.861700007 0.073816442 1.03489612 0.211709239 0.015366829 0.659147612 5.94E-05 4.226252353 -0.974885417 down HRHS(ph)IQLDLGDLEELNK ddPTM_HeLa_CUDC101_4h_R1 1 HRHSIQLDLGDLEELNK 17 1 Q7Z591-4;Q7Z591-5;Q7Z591-8;Q7Z591-7;Q7Z591-2;Q7Z591 Q7Z591-4 AKNA AT-hook-containing transcription factor 1 0 HRHS(1)IQLDLGDLEELNK 62.055 0.020729 6465200 2878.2 4666.3 2770.6 5250.5 7026.8 8958.7 6919.9 2994.7 6226.4 4622.9 TRUE FALSE FALSE 2540.821759 4810.063172 2920.387017 5464.638085 6508.446963 8787.827724 7186.802861 3335.604543 5969.745157 4595.402785 0.552905127 1.046711985 0.63550186 1.189153234 1.416295212 1.912308482 1.563911413 0.72585684 1.299068969 1 12.1659756 -6.028385114 3.280395974 0.796905897 1.448194944 0.28614652 0.346191482 0.166447897 3.675476505 0.049005959 0.088320868 9.37E-07 6.028385114 0.651289048 YGVYEDENYEVGS(ph)DDEEIPFK ddPTM_HeLa_CUDC101_4h_R1 4 YGVYEDENYEVGSDDEEIPFK 21 0 O15541 O15541 RNF113A RING finger protein 113A 1 0 YGVYEDENYEVGS(1)DDEEIPFK;YGVYEDENY(0.005)EVGS(0.995)DDEEIPFK;YGVYEDENY(0.009)EVGS(0.991)DDEEIPFK;YGVYEDENY(0.006)EVGS(0.994)DDEEIPFK ;;; 102.33 0.00010026 59956400 19933.3 17455.9 17231.5 16393.36 17583.2 16904.8 16485.6 16155.1 18852 17545.5 TRUE FALSE FALSE 17596.74879 17993.69559 18163.08701 17061.95208 16286.12237 16582.36911 17121.45511 17994.13128 18074.91258 17441.13859 1.008922021 1.031681246 1.041393423 0.978259074 0.933776329 0.950761845 0.981670722 1.031706227 1.03633788 1 14.0902066 -6.027026202 23.69511672 1.00937292 0.971138338 0.377560044 0.028157875 353.0930973 309573.1455 0.004213125 0.007002774 9.40E-07 6.027026202 -0.038234583 AADET(ph)LCQT(ph)KR ddPTM_HeLa_CUDC101_4h_R1 1 AADETLCQTKR 11 1 P49916-4;P49916-2 P49916-4 LIG3 DNA ligase 3 2 0 AADET(1)LCQT(1)KR 81.548 0.02596 34701000 2114.6 2406 2782.6 2196.7 2255.3 2110.6 2283.1 2302.1 2501.5 2860.5 TRUE FALSE FALSE 1866.729794 2480.126008 2933.035773 2286.290921 2088.931012 2070.343821 2371.159932 2564.161759 2398.387111 2843.485619 0.656493489 0.872213312 1.031493092 0.804045185 0.734637446 0.728100683 0.833892008 0.901767092 0.843467291 1 11.47344479 -6.026715585 24.92544984 0.852951159 0.793491633 0.096259775 0.106608035 2236.118121 2086279.555 0.022253512 0.036981536 9.40E-07 6.026715585 -0.059459526 EEPGS(ph)PLSPAPR ddPTM_HeLa_CUDC101_4h_R1 2 EEPGSPLSPAPR 12 0 B2RBV5 B2RBV5 LOC93622 1 0 EEPGS(0.996)PLS(0.004)PAPR;EEPGS(1)PLSPAPR ; 134.61 0.0014181 50075000 5876.7 5635.4 5308.2 5140.7 5842.9 4634.9 4666.3 5951.9 5605.2 5865.7 TRUE FALSE FALSE 5187.842134 5809.019994 5595.177348 5350.359966 5411.880908 4546.497005 4846.280754 6629.440238 5374.151284 5830.810556 0.889729153 0.996262859 0.959588259 0.917601406 0.928152417 0.779736704 0.831150439 1.136967181 0.921681683 1 12.50948073 -6.0265557 2.771948167 0.951655655 0.903251752 0.022767378 0.09211548 0.714735066 11.01903568 0.01423357 0.026183589 9.41E-07 6.0265557 -0.048403902 SIFAS(ph)PESVTGK ddPTM_HeLa_CUDC101_4h_R1 1 SIFASPESVTGK 12 0 O75940 O75940 SMNDC1 Survival of motor neuron-related-splicing factor 30 1 0 SIFAS(0.979)PES(0.021)VTGK 126.1 0.0023394 47880000 4835.1 4195.2 3746.8 3700.2 4653.6 3758.1 3108.2 1195 4723.9 4454.3 TRUE FALSE FALSE 4268.336908 4324.449139 3949.363341 3851.11015 4310.313199 3686.420504 3228.084315 1331.03397 4529.178843 4427.805626 0.963984707 0.976657402 0.89194596 0.869755919 0.973464864 0.832561502 0.729048334 0.30060804 1.022894685 1 12.11237618 -4.226170958 1.207564739 0.967219261 4.30E-24 0.940896356 0.049538549 0.263375785 0.298572499 0.007428597 0.324359819 5.94E-05 4.226170958 -0.967219261 down GVQVPASPDT(ph)VPQPSLR ddPTM_HeLa_CUDC101_4h_R1 1 GVQVPASPDTVPQPSLR 17 0 Q92613;F2Z2B6;F2Z3N8 Q92613 JADE3 Protein Jade-3 1 0 GVQVPAS(0.076)PDT(0.923)VPQPS(0.001)LR 109.39 0.005486 18576000 1820.2 1579.8 1702.9 1454.8 1539.2 1385.5 1259.4 1573 1394.1 1670.7 TRUE FALSE FALSE 1606.838915 1628.471765 1794.963925 1514.133032 1425.656283 1359.073896 1307.97548 1752.063962 1336.634608 1660.762602 0.967530768 0.980556621 1.080807048 0.911709494 0.858434722 0.818343268 0.787575225 1.054975563 0.804831832 1 10.69763015 -6.026157454 10.85157046 0.990723597 0.870844896 0.136968227 0.093352343 0.547782649 226.0678263 0.010230158 0.017214133 9.42E-07 6.026157454 -0.119878701 (ac)AS(ph)PTDGTDLEASLLSFEK ddPTM_HeLa_CUDC101_4h_R1 3 ASPTDGTDLEASLLSFEK 18 0 G3V5T8 G3V5T8 LIN52 1 0 AS(0.41)PT(0.41)DGT(0.171)DLEAS(0.009)LLSFEK;AS(0.479)PT(0.479)DGT(0.042)DLEASLLSFEK;AS(0.492)PT(0.492)DGT(0.016)DLEASLLSFEK ;; 109.22 7.69E-12 26602100 1041.501 1049.929 746.53 1064.14 1178.26 1145.8 1114.186 1061.79 999.26 1076.566 TRUE FALSE FALSE 919.4178316 1082.276068 786.8896699 1107.540229 1091.342107 1123.945774 1157.160527 1182.659882 958.0700799 1070.162538 0.859138495 1.011319337 0.735299211 1.034927116 1.019790984 1.050257073 1.081294183 1.105121736 0.895256605 1 10.06361422 -6.026114972 24.96965965 0.923606393 1.059728871 0.509183158 0.076262234 556.1493371 531758.1446 0.012240064 0.020345215 9.42E-07 6.026114972 0.136122478 GS(ph)PSPASVSSGR ddPTM_HeLa_CUDC101_4h_R1 4 GSPSPASVSSGR 12 0 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 1 0 GS(0.958)PS(0.042)PASVSSGR;GS(0.996)PS(0.004)PASVSSGR;GS(0.997)PS(0.003)PASVSSGR;GS(0.999)PS(0.001)PASVSSGR ;;; 125.36 0.0024653 182067000 7704.6 6202.4 6175.5 6570.21 5617.12 5338.84 5767.05 4600.73 6873.8 7197.2 TRUE FALSE FALSE 6801.478467 6393.488592 6509.36621 6838.171563 5202.756248 5237.010522 5989.48705 5124.458506 6590.459055 7154.390734 0.950671933 0.893645431 0.909842145 0.955800685 0.727211644 0.731999511 0.837176396 0.716267632 0.921176841 1 12.8046132 -6.025619358 0.556750755 0.985793107 0.726339859 0.666462231 0.057568504 0.383258962 0.211558271 0.013053013 0.046153139 9.43E-07 6.025619358 -0.259453247 ALS(ph)TTSSSTTNGNR ddPTM_HeLa_CUDC101_4h_R1 2 ALSTTSSSTTNGNR 14 0 C9JUH3;A0A0A0MT72;Q9BSQ5-3;Q9BSQ5-4;Q9BSQ5;Q9BSQ5-2 C9JUH3 CCM2 Cerebral cavernous malformations 2 protein 1 0 ALS(0.893)T(0.093)T(0.004)S(0.004)S(0.004)STTNGNR;ALS(0.864)T(0.078)T(0.054)S(0.001)S(0.001)S(0.001)TTNGNR ; 187.63 4.03E-11 25395000 4899.6 4652.2 3793.6 4628.9 5509.1 5481.3 4682.7 4840.9 4704.8 4125.4 TRUE FALSE FALSE 4325.276315 4795.528768 3998.693491 4817.68655 5102.704669 5376.753335 4863.313308 5391.968488 4510.866153 4100.861937 1.05472371 1.169395323 0.975086104 1.174798524 1.244300527 1.311127616 1.185924662 1.314837849 1.099980009 1 12.00171146 -6.025498428 3.021252273 1.036058883 1.261472367 0.693896536 0.062812486 0.093222665 1.724115924 0.00907051 0.016519804 9.43E-07 6.025498428 0.225413484 S(ph)PSAGILR ddPTM_HeLa_CUDC101_4h_R1 1 SPSAGILR 8 0 F5GX58;F8WDL1;Q99618;J3KMY0 F5GX58 CDCA3 Cell division cycle-associated protein 3 1 0 S(0.998)PS(0.002)AGILR 101.46 0.017506 12659000 1332.2 1106.8 826.98 994.72 1002.4 816.22 838.98 721.15 991.01 1053.9 TRUE FALSE FALSE 1176.041535 1140.899196 871.6890403 1035.288981 928.4549491 800.6519634 871.3397396 803.242801 950.1601483 1047.631356 1.122571913 1.089027347 0.832057035 0.988218781 0.886242039 0.764249713 0.831723616 0.766722756 0.906960395 1 10.03291543 -6.024544481 0.892832363 1.058973891 0.785705764 0.517486285 0.083711914 0.256823371 0.397706645 0.013875041 0.037323527 9.45E-07 6.024544481 -0.273268126 NNSFTAPSTVGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 NNSFTAPSTVGKR 13 1 O95453;O95453-3;O95453-2;A0A494C0W0;A0A494C0K5;A0A494C0Q6;O95453-4 O95453 PARN Poly(A)-specific ribonuclease PARN 0 1 ; NNSFTAPSTVGK(1)R;NNSFTAPSTVGK(1)R 236.08 4.38E-31 4801200 951.63 828.52 850.32 785.41 760.29 934.56 925.04 1124.86 699.56 1047.25 FALSE TRUE FALSE 840.081374 854.0457192 896.2908713 817.4424146 704.2049214 916.7348251 960.7191027 1252.909516 670.7238407 1041.02091 0.806978386 0.820392473 0.860972976 0.785231503 0.676456077 0.880611346 0.922862445 1.20353924 0.644294302 1 10.02378333 -4.253177517 2.878483744 0.870720823 1.265720888 0.483919603 0.109464929 0.29937079 3.405882005 0.015084186 0.277064279 5.58E-05 4.253177517 0.395000066 NNSHVNREEVIR ddPTM_HeLa_CUDC101_4h_R1 2 NNSHVNREEVIR 12 1 Q9NXG2 Q9NXG2 THUMPD1 THUMP domain-containing protein 1 0 0 ; ; 111.52 0.0030401 3306200 1889.43 2000.87 1879.57 2166.9 2464.5 2410.4 1727 2300.3 2315.2 2006.5 FALSE FALSE TRUE 1667.95388 2062.514433 1981.18524 2255.275548 2282.698745 2364.425636 1793.610969 2562.156854 2219.766476 1994.565249 0.836249343 1.034067165 0.993291767 1.130710339 1.144459298 1.185434088 0.899249082 1.284569084 1.112907426 1 10.9618586 -6.612574471 1.725898922 0.92519325 1.119641703 0.161288038 0.117880853 0.260938952 1.573663475 0.017694209 0.02732696 2.44E-07 6.612574471 0.194448453 EMDMSPEEVVAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 EMDMSPEEVVASPR 14 0 Q13049 Q13049 TRIM32 E3 ubiquitin-protein ligase TRIM32 1 0 EMDMSPEEVVAS(1)PR;EMDMSPEEVVAS(1)PR ; 155.56 8.12E-05 40799000 2918 2873.9 2572.9 2172.9 2350.5 2423.96 1796.8 1814.39 2554.1 2372.78 TRUE FALSE FALSE 2575.956463 2962.441453 2711.998757 2261.520254 2177.108298 2377.727002 1866.103178 2020.932824 2448.818917 2358.666599 1.092124027 1.255981432 1.149801654 0.958813024 0.923025026 1.008081008 0.791168696 0.856811567 1.03822173 1 11.20375579 -6.024283203 3.8409317 1.07111189 0.897629424 0.566707734 0.085614692 0.172558656 5.555577331 0.014884441 0.026461856 9.46E-07 6.024283203 -0.173482466 LS(ph)PQQESSASSK ddPTM_HeLa_CUDC101_4h_R1 2 LSPQQESSASSK 12 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 LS(1)PQQESSASSK;LS(1)PQQESSASSK ; 160.46 4.18E-08 5089300 4229.2 3658.7 3802.1 3311.3 3285.7 3099 2654.4 2948.9 3573.4 4269.1 TRUE FALSE FALSE 3733.459587 3771.42021 4007.653027 3446.349127 3043.320457 3039.891738 2756.781097 3284.590856 3426.10294 4243.707203 0.879763709 0.888708865 0.94437548 0.812108131 0.717137237 0.716329283 0.649616235 0.773990923 0.807337259 1 12.0511094 -6.02369122 2.016356219 0.938161405 0.706039508 0.676079696 0.05937879 0.10702293 0.86524016 0.008561367 0.016590633 9.47E-07 6.02369122 -0.232121897 LAGES(ph)ESNLR ddPTM_HeLa_CUDC101_4h_R1 1 LAGESESNLR 10 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 1 0 LAGES(0.892)ES(0.108)NLR 95.477 0.021161 4865300 1237.6 1217.4 1055.2 1007.9 1040.7 926.39 952.41 956.43 1010.6 1125.9 TRUE FALSE FALSE 1092.530404 1254.906651 1112.247304 1049.006519 963.9296344 908.7206542 989.1447727 1065.306125 968.9426403 1119.203097 0.976168139 1.12125016 0.993785049 0.937279857 0.861264267 0.811935436 0.883793813 0.95184344 0.865743352 1 10.12825614 -6.023493168 3.033735273 1.000608666 0.873609689 0.393514535 0.066114167 0.146008372 2.727568161 0.008024227 0.014620447 9.47E-07 6.023493168 -0.126998977 DAEPPS(ph)PTPAGPPR ddPTM_HeLa_CUDC101_4h_R1 2 DAEPPSPTPAGPPR 14 0 O43306-2;O43306 O43306-2 ADCY6 Adenylate cyclase type 6 1 0 DAEPPS(0.944)PT(0.056)PAGPPR;DAEPPS(0.94)PT(0.06)PAGPPR ; 129.17 0.00012031 0 3973 2667.4 2778.7 3082.7 2685.9 2881.1 2628.8 2248.1 2555.2 2945.1 TRUE FALSE FALSE 3507.290963 2749.579432 2928.924927 3208.425831 2487.766508 2826.147818 2730.193697 2504.014617 2449.873574 2927.582414 1.198016133 0.93919796 1.000458574 1.095930149 0.849768224 0.965352095 0.932576205 0.855318233 0.836824802 1 11.51549407 -6.021561712 0.91196187 1.085440498 0.898813297 0 0.112375107 0.465413137 0.753462019 0.017454984 0.04646442 9.52E-07 6.021561712 -0.186627202 IDDRDS(ph)DEEGASDR ddPTM_HeLa_CUDC101_4h_R1 4 IDDRDSDEEGASDR 14 1 Q8TDD1-2;Q8TDD1 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 IDDRDS(1)DEEGASDR;IDDRDS(1)DEEGASDR;IDDRDS(1)DEEGASDR;IDDRDS(1)DEEGASDR ;;; 285.79 8.59E-103 288616000 17422.3 14749.5 15615.9 13783.9 13781.1 14058.9 13746.5 14382.4 12908.8 14766.5 TRUE FALSE FALSE 15380.0844 15203.91461 16460.14279 14346.06702 12764.49571 13790.74991 14276.70711 16019.63428 12376.6938 14678.6682 1.04778473 1.035782975 1.121364865 0.977341188 0.869594948 0.939509615 0.97261597 1.091354751 0.843175527 1 13.84143346 -6.021108792 24.9736849 1.031870821 0.961142971 0.017964519 0.084163641 837.1626759 990442.2098 0.009168595 0.015308392 9.53E-07 6.021108792 -0.07072785 NLQPLMRS(ph)PISR ddPTM_HeLa_CUDC101_4h_R1 2 NLQPLMRSPISR 12 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 NLQPLMRS(1)PISR;NLQPLMRS(1)PISR ; 101.2 0.0059675 36097000 2215.9 2583.6 2162.47 2545.2 2823 2648.9 2619.6 2600.3 2811.2 2623.2 TRUE FALSE FALSE 1956.155561 2663.197654 2279.379669 2649.004257 2614.752914 2598.376646 2720.63885 2896.307641 2695.321146 2607.59709 0.750175542 1.021322529 0.874130316 1.015879435 1.002744222 0.996464007 1.04335093 1.110719004 1.033641722 1 11.34850525 -6.020992807 1.048448362 0.887605183 1.053715873 0.147662176 0.088530451 0.474385091 1.026388063 0.01770666 0.043492249 9.53E-07 6.020992807 0.166110689 MLPHAPGVQMQAIPEDAVHEDS(ph)GDEDGEDPDKR ddPTM_HeLa_CUDC101_4h_R1 17 MLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKR 33 1 Q92769;Q92769-3 Q92769 HDAC2 Histone deacetylase 2 1 0 MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR ;;;;;;;;;;;;;;;; 83.179 2.00E-08 2587534000 49149.6 44593.65 45638.3 43966.78 49426.88 45306.62 43105.9 43471.11 46772 48298.63 TRUE FALSE FALSE 43388.35839 45967.5275 48105.64455 45759.93533 45780.75753 44442.47171 44768.509 48419.68545 44844.03836 48011.3476 0.903710489 0.957430478 1.001964055 0.953106664 0.953540357 0.925665992 0.93245683 1.008505028 0.934029987 1 15.55108781 -6.020157857 24.0293831 0.95777116 0.951579634 0 0.033917762 4127.751372 4920542.044 0.006485367 0.010845782 9.55E-07 6.020157857 -0.006191527 S(ph)PSPPT(ph)QHTGQPPGQPSAPSQLSAPR ddPTM_HeLa_CUDC101_4h_R1 2 SPSPPTQHTGQPPGQPSAPSQLSAPR 26 0 Q68EM7-7;Q68EM7-3;Q68EM7-6;Q68EM7-5;Q68EM7;I3L460;Q68EM7-2 Q68EM7-7 ARHGAP17 Rho GTPase-activating protein 17 2 0 S(0.611)PS(0.611)PPT(0.565)QHT(0.213)GQPPGQPSAPSQLSAPR;S(0.512)PS(0.495)PPT(0.943)QHT(0.049)GQPPGQPS(0.001)APSQLSAPR ; 79.236 0.00010515 22626000 630.58 622.96 568.29 666.3 826 676.88 730.74 570.55 763.05 745.31 TRUE FALSE FALSE 556.6643683 642.1526592 599.0134764 693.474594 765.0676256 663.9696418 758.9248866 635.4991058 731.596756 740.876863 0.751358824 0.866746812 0.808519615 0.936018694 1.032651529 0.896194327 1.024360355 0.857766165 0.987474157 1 9.53308997 -6.019761052 23.48939827 0.873077019 0.957633872 0.129678562 0.084880885 552.5130596 656758.0959 0.015524248 0.026013737 9.56E-07 6.019761052 0.084556853 NPDDITNEEYGEFYK ddPTM_HeLa_CUDC101_4h_R1 3 NPDDITNEEYGEFYK 15 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ;; ;; 189.69 2.18E-10 166661000 7279.6 6807.5 6594.82 6468.95 6907.8 6529.03 6667.88 7008.48 7660.09 7216.56 FALSE FALSE TRUE 6426.296323 7017.231006 6951.355917 6732.781742 6398.225356 6404.499631 6925.062365 7806.297034 7344.337848 7173.63558 0.895821408 0.978197307 0.969014364 0.93854527 0.891908334 0.892782963 0.96534906 1.088192583 1.023795782 1 12.80848874 -4.225824487 0.002061386 1.889070178 3.82E-08 0 0.061206036 1065488.951 341.8851089 154314.5835 159019.8299 5.95E-05 4.225824487 -1.88907014 NPDDITQEEYGEFYK ddPTM_HeLa_CUDC101_4h_R1 4 NPDDITQEEYGEFYK 15 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;;; ;;; 299.25 5.22E-122 396684000 10626.9 9984 9178.9 7773.3 9404.1 8550.5 8414.3 9447 9721.8 9185.2 FALSE FALSE TRUE 9381.230891 10291.59521 9675.139099 8090.328773 8710.378279 8387.413459 8738.84237 10522.40829 9321.063289 9130.566022 1.027453377 1.127158511 1.059642861 0.886070891 0.953980099 0.91860827 0.95709755 1.152437677 1.020863687 1 13.15648858 -6.305460262 24.98989229 1.026857348 0.968570346 0.169568328 0.07439549 737.8683434 418873.9366 0.011531352 0.017614526 4.95E-07 6.305460262 -0.058287002 NPDELAEALDER ddPTM_HeLa_CUDC101_4h_R1 2 NPDELAEALDER 12 0 K7EM11;O14908-2;O14908 K7EM11 GIPC1 PDZ domain-containing protein GIPC1 0 0 ; ; 196.27 2.11E-15 25181000 2037.2 1763.12 1730.19 1666.54 1959.32 2118.82 1638.98 1598.15 1664.43 1569.43 FALSE FALSE TRUE 1798.402504 1817.439637 1823.729305 1734.508705 1814.784867 2078.407039 1702.196008 1780.076936 1595.821491 1560.094961 1.152751948 1.164954495 1.168986088 1.111796877 1.163252823 1.332231109 1.09108487 1.141005504 1.022900228 1 10.60741813 -9.145529134 0.485561507 0.965883674 1.174944053 0.506563317 0.060979836 0.957816621 0.327053059 0.096080742 0.017079851 7.15E-10 9.145529134 0.209060379 NPDVDTSFLPDRDREEEENR ddPTM_HeLa_CUDC101_4h_R1 2 NPDVDTSFLPDRDREEEENR 20 2 Q9Y247;B0S8I6;Q14320 Q9Y247;Q14320 FAM50B;FAM50A Protein FAM50B;Protein FAM50A 0 0 ; ; 56.347 0.015406 62736000 3432.5 2777.2 3044.7 2543.2 2780 2755.4 2582.7 2560.4 3290.1 4114.2 FALSE FALSE TRUE 3030.147553 2862.76224 3209.305692 2646.922689 2574.924939 2702.845336 2682.315604 2851.865587 3154.480685 4089.728555 0.740916546 0.699988325 0.784723399 0.647212316 0.629607785 0.660886242 0.655866415 0.697323929 0.771317862 1 11.99778938 -9.15148824 0.34320462 1.115135858 0.648348501 0.404694561 0.079765886 0.536789304 0.088803476 0.097002495 0.017035792 7.06E-10 9.15148824 -0.466787358 NPDVDTSFLPDRDREEEENRLR ddPTM_HeLa_CUDC101_4h_R1 2 NPDVDTSFLPDRDREEEENRLR 22 3 Q9Y247;B0S8I6;Q14320 Q9Y247;Q14320 FAM50B;FAM50A Protein FAM50B;Protein FAM50A 0 0 ; ; 57.045 0.0073037 168282000 1686.22 1499.45 1432.1 1412.18 1768.94 1425.24 1361.27 1579.23 1694.36 1325.36 FALSE FALSE TRUE 1488.563848 1545.646277 1509.523658 1469.774804 1638.44882 1398.055922 1413.77464 1759.00316 1624.517764 1317.4767 1.129859714 1.173186803 1.14576877 1.115598329 1.243626412 1.061161781 1.073092708 1.335130375 1.233052367 1 10.36356173 -9.174498618 0.394045171 0.951779372 1.167138116 0 0.105402413 1.770283247 0.379840596 0.161145504 0.026771551 6.69E-10 9.174498618 0.215358744 LNDS(ph)PTLK ddPTM_HeLa_CUDC101_4h_R1 3 LNDSPTLK 8 0 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 LNDS(0.939)PT(0.061)LK;LNDS(0.993)PT(0.007)LK;LNDS(0.993)PT(0.007)LK ;; 142.19 0.0043565 464600000 16264.1 14702.1 14053.8 13591.5 14941.4 14592.8 13465.2 12546.7 14718.8 14426.2 TRUE FALSE FALSE 14357.64685 15155.05427 14813.59094 14145.82012 13839.20269 14314.46665 13984.55727 13974.96561 14112.08483 14340.39232 1.001203212 1.056808903 1.032997606 0.986431877 0.965050494 0.998192123 0.975186519 0.974517663 0.984079411 1 13.80779687 -6.01952272 23.62927387 1.007985127 0.978981336 0.402750892 0.020707662 361.6956998 437778.1372 0.003240322 0.005433001 9.56E-07 6.01952272 -0.029003791 NPEFFEHR ddPTM_HeLa_CUDC101_4h_R1 1 NPEFFEHR 8 0 O43252 O43252 PAPSS1 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase 0 0 90.108 0.026988 7980900 6267.5 7752.1 7474.1 9045.4 11125 10903 10551 8552.2 10912 7231.4 FALSE FALSE TRUE 5532.833151 7990.933012 7878.172454 9414.31051 10304.33091 10695.04344 10957.9556 9525.747879 10462.20274 7188.387311 0.769690462 1.11164475 1.095958261 1.309655435 1.433469076 1.487822369 1.524396938 1.325157851 1.45543114 1 12.81145243 -6.410664503 1.272537672 0.895791994 1.457037914 0.297900559 0.197038811 0.118011975 0.378822938 0.018732671 0.033617749 3.88E-07 6.410664503 0.561245919 TSS(ph)TNEDEDLNPEQKIER ddPTM_HeLa_CUDC101_4h_R1 1 TSSTNEDEDLNPEQKIER 18 1 Q99081;Q99081-3;B4DGI9;Q99081-4;Q99081-2;B4DZP2;F5GY10 Q99081 TCF12 Transcription factor 12 1 0 T(0.388)S(0.13)S(0.469)T(0.014)NEDEDLNPEQKIER 59.618 0.024323 6336700 565.86 635.8 806.45 653.88 1255.5 881.95 914.74 1155.5 669.05 684.8 TRUE FALSE FALSE 499.5307486 655.3882444 850.0491264 680.5480527 1162.884266 865.1282732 950.0218282 1287.037449 641.4714758 680.7267791 0.733819741 0.962777232 1.248737603 0.999737448 1.708298104 1.270889143 1.395599317 1.890681385 0.942333247 1 9.410932055 -6.019300593 0.899639555 0.874620535 1.588435596 0.650565093 0.204673344 0.263129862 0.413854706 0.037279959 0.100251111 9.57E-07 6.019300593 0.713815061 TLSS(ph)PSNRPSGETSVPPPPAAPPFLPVGR ddPTM_HeLa_CUDC101_4h_R1 1 TLSSPSNRPSGETSVPPPPAAPPFLPVGR 29 1 H3BUF6 H3BUF6 ATXN2L 1 0 T(0.106)LS(0.324)S(0.383)PS(0.041)NRPS(0.049)GET(0.049)S(0.049)VPPPPAAPPFLPVGR 78.025 1.14E-05 20948000 230.68 278.15 109.2 302.48 574.01 308.09 262.33 239.33 349.69 241.41 TRUE FALSE FALSE 203.6400401 286.7194718 115.1036823 314.8164418 531.6664259 302.2136966 272.448156 266.5743598 335.2756302 239.9740826 0.848591806 1.194793491 0.479650473 1.311876843 2.215516026 1.259359733 1.135323253 1.110846459 1.397132668 1 7.906734792 -6.01913438 24.92329708 0.919224006 1.442825718 0.244847496 0.366681315 597.042227 777671.7159 0.049520198 0.082998203 9.57E-07 6.01913438 0.523601712 NPGFEIIHGLLDR ddPTM_HeLa_CUDC101_4h_R1 1 NPGFEIIHGLLDR 13 0 Q9NSD9-2;Q9NSD9 Q9NSD9-2 FARSB Phenylalanine--tRNA ligase beta subunit 0 0 172.58 3.52E-07 5877100 4845.7 3520.4 2695.4 3336.3 3709 3323.6 3130.6 3213.6 3153.9 3011.7 FALSE FALSE TRUE 4277.694392 3628.859351 2841.121477 3472.368735 3435.394459 3260.207867 3251.348291 3579.423234 3023.894907 2993.786274 1.42885764 1.212130399 0.949006114 1.159858593 1.147508254 1.088991521 1.086032199 1.195617491 1.010057041 1 11.54775552 SPRPGS(ph)SAPEHSPR ddPTM_HeLa_CUDC101_4h_R1 1 SPRPGSSAPEHSPR 14 1 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 S(0.001)PRPGS(0.732)S(0.267)APEHSPR 65.905 0.031879 2503000 320.6 178 277.01 194.88 119.57 195.38 250.31 198.11 348.13 171.4 TRUE FALSE FALSE 283.019754 183.483969 291.9859985 202.8280487 110.7495593 191.653452 259.9645405 220.6620416 333.7799341 170.3805052 1.66110409 1.076907061 1.713728916 1.190441644 0.650013094 1.124855522 1.525788061 1.295113202 1.959026555 1 7.412616463 -6.018812486 24.87801519 1.331583891 1.142400503 0.109348185 0.351592266 1681.915288 2224200.327 0.051931089 0.087100404 9.58E-07 6.018812486 -0.189183389 LFPADTSPST(ph)ATK ddPTM_HeLa_CUDC101_4h_R1 1 LFPADTSPSTATK 13 0 Q6NZY4;Q6NZY4-2 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 0 LFPADT(0.093)S(0.353)PS(0.15)T(0.403)AT(0.002)K 165.51 0.00010156 32526000 5257.8 4606.4 4195.8 4364.3 4639.7 4282.3 4386.1 3664.8 5112.6 4603 TRUE FALSE FALSE 4641.488654 4748.317724 4422.63764 4542.295018 4297.438575 4200.622262 4555.273346 4081.986018 4901.856464 4575.621151 1.014395314 1.03774276 0.96656552 0.992716588 0.93920332 0.918044157 0.995552996 0.892116258 1.071298585 1 12.15975189 -6.018780395 1.446639478 1.008354125 0.938053775 0.539213101 0.035263569 0.217758371 0.904603245 0.004314656 0.009173616 9.58E-07 6.018780395 -0.07030035 DLVQPDKPAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 DLVQPDKPASPK 12 1 H0YJA2;Q6PJT7-5;Q6PJT7-2;Q6PJT7;Q6PJT7-9;G3V411;G3V4R5 H0YJA2;G3V4R5 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 DLVQPDKPAS(1)PK;DLVQPDKPAS(1)PK ; 109.48 0.029412 403908000 9835.8 9466.1 9706.3 8968.1 9335.9 8362.5 9004.7 10013.8 10266.1 10483.2 TRUE FALSE FALSE 8682.862434 9757.739321 10231.05194 9333.857881 8647.209257 8202.999245 9352.014295 11153.73051 9842.927013 10420.84546 0.833220535 0.936367338 0.981787128 0.895691037 0.829799203 0.787172142 0.897433354 1.070328752 0.944542077 1 13.34718471 -6.01877954 24.1789851 0.925353881 0.885268505 0.047193427 0.08051696 1493.405853 1922788.676 0.014064957 0.023601145 9.58E-07 6.01877954 -0.040085377 NPLPPSVGVVDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 NPLPPSVGVVDKK 13 1 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 1 ; NPLPPSVGVVDK(1)K;NPLPPSVGVVDK(1)K 147.71 0.00064533 937910 726.85 455.25 135.72 132.7 596.16 732.35 716.01 537.18 748.17 698.44 FALSE TRUE FALSE 641.6497448 469.2757129 143.0574337 138.1120796 552.1824645 718.3816439 743.6267455 598.3303998 717.3301159 694.2856478 0.924186964 0.675911585 0.206049821 0.198926883 0.795324614 1.034706171 1.071067432 0.861792839 1.033191624 1 9.439385538 -7.317587162 4.579847082 0.96639607 0.685923051 0.187219371 0.280453251 0.32119273 14.1324548 0.054816325 0.062993888 4.81E-08 7.317587162 -0.280473019 NPPGFAFVEFEDPR ddPTM_HeLa_CUDC101_4h_R1 1 NPPGFAFVEFEDPR 14 0 A0A0B4J1Z1;C9JAB2;Q16629-3;Q16629-2;Q16629-4;Q16629;P84103;P84103-2;A0A087X2D0 A0A0B4J1Z1;P84103 SRSF7;SRSF3 Serine/arginine-rich splicing factor 7;Serine/arginine-rich splicing factor 3 0 0 122.46 0.0072785 15768000 347.54 238.63 297.43 306.07 411.59 195.69 226.13 248.9 273.15 351.12 FALSE FALSE TRUE 306.801888 245.9819075 313.5099655 318.5528575 381.2278257 191.9575393 234.8519098 277.2337699 261.8906414 349.0315226 0.87900911 0.704755564 0.898228226 0.912676469 1.092244686 0.549971928 0.672867333 0.79429436 0.750335212 1 8.447213528 -1.173474682 0.094818909 1.113118877 4.66E-16 0 0.154624928 128.2871201 0.90665866 1.385549108 18.63251215 0.067069539 1.173474682 -1.113118877 NPPGFAFVEFEDPRDAADAVR ddPTM_HeLa_CUDC101_4h_R1 3 NPPGFAFVEFEDPRDAADAVR 21 1 P84103;P84103-2;A0A087X2D0 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 0 ;; ;; 97.776 0.00038541 45257500 886.36 769.418 1248.24 988.03 1055.76 1151.63 866.94 1046.28 909.61 1282.41 FALSE FALSE TRUE 782.4622244 793.1228566 1315.72363 1028.326134 977.8786882 1129.664576 900.3781662 1165.384286 872.1154908 1274.782168 0.613800729 0.622163438 1.032116437 0.806668119 0.767094734 0.886162832 0.706299624 0.914183078 0.684129032 1 10.31603503 -9.631472086 1.478825053 0.998991621 0.768554544 0 0.157481329 0.416168004 1.646647959 0.092810858 0.021554455 2.34E-10 9.631472086 -0.230437078 NPPGFAFVEFEDPRDAEDAVR ddPTM_HeLa_CUDC101_4h_R1 4 NPPGFAFVEFEDPRDAEDAVR 21 1 A0A0B4J1Z1;C9JAB2;Q16629-3;Q16629-2;Q16629-4;Q16629 A0A0B4J1Z1 SRSF7 Serine/arginine-rich splicing factor 7 0 0 ;;; ;;; 118.66 1.27E-06 100747000 1001.29 1159.77 885.325 959.05 987.75 1435.87 1048.26 1210.9 1045.78 1055.29 FALSE FALSE TRUE 883.9203041 1195.501139 933.1883475 998.1642044 914.8856504 1408.483172 1088.691739 1348.743961 1002.672506 1049.013088 0.842620854 1.139643683 0.889586944 0.951526931 0.872139405 1.342674546 1.037824744 1.285726533 0.955824591 1 10.03481696 -5.271399089 24.99742772 0.93666584 1.203650225 0.571673317 0.107044886 355.9951682 893496.5317 0.01512941 0.034208235 5.35E-06 5.271399089 0.266984385 HRS(ph)IHEVDISNLEAALR ddPTM_HeLa_CUDC101_4h_R1 1 HRSIHEVDISNLEAALR 17 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 HRS(1)IHEVDISNLEAALR 54.281 0.031416 7086900 5048.9 4333.9 4021.6 4508 5184.2 5001 4636 4045.8 4642.5 4580.3 TRUE FALSE FALSE 4457.075596 4467.422322 4239.019861 4691.855725 4801.771894 4905.614257 4814.812073 4506.357518 4451.134185 4553.056172 0.978919527 0.981192007 0.931027358 1.03048492 1.054626105 1.077433283 1.057490154 0.989743449 0.977614599 1 12.15261954 -6.018728319 23.09068469 0.984780731 1.047369606 0.594904168 0.027566861 160.9717345 198467.3637 0.004173274 0.007010505 9.58E-07 6.018728319 0.062588875 NPQAGVPPFSSLK(ac)GK ddPTM_HeLa_CUDC101_4h_R1 2 NPQAGVPPFSSLKGK 15 1 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 0 1 ; NPQAGVPPFSSLK(1)GK;NPQAGVPPFSSLK(1)GK 139.48 0.004322 2802830 1532.89 1634.33 1769.96 1850.88 2017.6 2005.59 1762.31 1507.61 1019.86 1136.04 FALSE TRUE FALSE 1353.206958 1684.68177 1865.649391 1926.366887 1868.765668 1967.336712 1830.282887 1679.230228 977.8209391 1129.282784 1.198288841 1.491815686 1.652065735 1.705832157 1.654825253 1.742111667 1.620748066 1.486988249 0.865877842 1 10.14119108 -7.286901496 1.358266491 1.066300664 1.657404982 0.895487857 0.095476955 0.077252428 0.273517242 0.016453195 0.019324147 5.17E-08 7.286901496 0.591104319 SGAQASS(ph)TPLSPTR ddPTM_HeLa_CUDC101_4h_R1 4 SGAQASSTPLSPTR 14 0 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 S(0.062)GAQAS(0.175)S(0.588)T(0.1)PLS(0.072)PT(0.002)R;SGAQAS(0.192)S(0.614)T(0.192)PLS(0.002)PTR;SGAQAS(0.17)S(0.563)T(0.244)PLS(0.023)PTR;SGAQAS(0.209)S(0.725)T(0.061)PLS(0.003)PT(0.003)R ;;; 169.15 5.47E-07 328975000 14060.6 13357.3 12976.1 12175.5 13894.6 11897.6 11603.7 12595.8 13894.3 13212.2 TRUE FALSE FALSE 12412.43778 13768.82258 13677.62722 12672.06952 12869.62304 11670.6731 12051.2586 14029.65496 13321.57107 13133.61325 0.945089333 1.048365162 1.041421501 0.964857825 0.979899651 0.888610993 0.917588966 1.068225072 1.014311205 1 13.68097626 -6.018292764 23.35855751 0.985556791 0.957120689 0.070140737 0.053719825 810.465334 1034909.322 0.008326281 0.014001234 9.59E-07 6.018292764 -0.028436101 RPDPDS(ph)DEDEDYER ddPTM_HeLa_CUDC101_4h_R1 2 RPDPDSDEDEDYER 14 1 H0Y6J6;Q5W012;Q96I25;Q5W011;Q5W010 H0Y6J6 RBM17 Splicing factor 45 1 0 RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER ; 199.61 2.70E-16 129794800 6759.5 5976.9 5037.8 5453.5 5054.4 5280.3 4600.2 4123 6421 6431.2 TRUE FALSE FALSE 5967.161657 6161.041205 5310.158707 5675.917302 4681.546982 5179.587075 4777.631255 4592.345654 6156.323662 6392.946936 0.933397652 0.963724753 0.830627684 0.887840515 0.732298739 0.810203358 0.74732847 0.718345655 0.962986823 1 12.6422654 -6.017914291 0.424739325 0.990693066 0.689463782 0.84673743 0.039054841 0.371162374 0.114313732 0.012136764 0.046563383 9.60E-07 6.017914291 -0.301229284 QLEEPGAGTPS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 4 QLEEPGAGTPSPVR 14 0 Q96P11-4;Q96P11-5;Q96P11;Q96P11-2;Q63ZY6-4;Q63ZY6-5;Q63ZY6 Q96P11-4 NSUN5;NSUN5P2 Probable 28S rRNA (cytosine-C(5))-methyltransferase;Putative methyltransferase NSUN5C 1 0 QLEEPGAGT(0.003)PS(0.997)PVR;QLEEPGAGT(0.176)PS(0.824)PVR;QLEEPGAGT(0.081)PS(0.919)PVR;QLEEPGAGTPS(1)PVR ;;; 213.71 5.56E-24 165021000 12240.2 10644.8 9817.3 9936 10141.6 10217.1 9128 8258.7 10795.5 11089.2 TRUE FALSE FALSE 10805.42231 10972.75367 10348.05293 10341.23303 9393.474373 10022.22584 9480.070018 9198.837025 10350.50492 11023.24095 0.980240055 0.995419925 0.938748684 0.93813 0.852151778 0.90919049 0.860007512 0.83449478 0.938971122 1 13.42826083 -6.016941067 0.768654392 0.993774076 0.849972563 0.764854229 0.027501054 0.156308202 0.175396928 0.00388737 0.011561344 9.62E-07 6.016941067 -0.143801514 S(ph)PDPGIVPQEAPVGNSLSELSEENFDGK ddPTM_HeLa_CUDC101_4h_R1 3 SPDPGIVPQEAPVGNSLSELSEENFDGK 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 1 0 S(1)PDPGIVPQEAPVGNSLSELSEENFDGK;S(1)PDPGIVPQEAPVGNSLSELSEENFDGK;S(1)PDPGIVPQEAPVGNSLSELSEENFDGK ;; 96.053 8.46E-09 57090000 17331.6 12944.3 11571.2 11463.7 9921.7 8698.7 7311.9 10392.3 12841.1 12149.6 TRUE FALSE FALSE 15300.01612 13343.09854 12196.77407 11931.23924 9189.795958 8532.786791 7593.922432 11575.31742 12311.78442 12077.33364 1.266837249 1.104804996 1.009889636 0.987903422 0.760912651 0.706512468 0.628774749 0.958433192 1.019412462 1 13.56001436 -6.016386635 1.600291264 1.124652176 0.743117663 0.647443247 0.108623198 0.17543089 0.892733475 0.020100276 0.041397598 9.63E-07 6.016386635 -0.381534513 VAGGAAPSKPAS(ph)AK ddPTM_HeLa_CUDC101_4h_R1 2 VAGGAAPSKPASAK 14 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 VAGGAAPS(0.007)KPAS(0.993)AK;VAGGAAPS(0.004)KPAS(0.996)AK ; 64.298 0.034485 429240000 17067.7 15480.4 15979.5 15970.9 15909.4 13756.8 12315.7 3833.9 16055.2 16112.5 TRUE FALSE FALSE 15067.05008 15957.33278 16843.40011 16622.26233 14735.79526 13494.41196 12790.72067 4270.335679 15393.39786 16016.66213 0.940710989 0.996295773 1.05161737 1.037810637 0.920029101 0.842523358 0.798588405 0.266618328 0.961086507 1 13.9672859 -4.224400749 1.474786991 0.978436012 3.23E-28 0.942782533 0.052318546 0.218432348 0.398192087 0.00797539 0.319745121 5.96E-05 4.224400749 -0.978436012 down T(ph)SPQELSEELSRR ddPTM_HeLa_CUDC101_4h_R1 1 TSPQELSEELSRR 13 1 A0A1B0GVY1;Q96PU5-9;Q96PU5-4;Q96PU5-2;Q96PU5-6;Q96PU5-5;Q96PU5-7;Q96PU5;K7ERN1;Q96PU5-3 A0A1B0GVY1 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 T(0.878)S(0.122)PQELSEELSRR 90.706 0.0013253 0 1133.9 1024.9 835.98 1048.4 1298.3 980.98 1088.1 1093.7 1353.7 1055.2 TRUE FALSE FALSE 1000.985961 1056.475954 881.1756075 1091.158284 1202.526996 962.2694409 1130.068381 1218.202387 1297.899913 1048.923623 0.954298233 1.007200077 0.840076043 1.040264762 1.146439043 0.917387519 1.077360025 1.161383307 1.237363602 1 10.03469392 -6.016205221 24.95166299 0.969711683 1.068072571 0.020992786 0.113421217 671.9118956 1034564.132 0.010891374 0.018407738 9.63E-07 6.016205221 0.098360889 SS(ph)ITEPEGPNGPNIQK ddPTM_HeLa_CUDC101_4h_R1 1 SSITEPEGPNGPNIQK 16 0 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 S(0.231)S(0.769)ITEPEGPNGPNIQK 326.57 5.07E-167 22916000 2851.7 2016.4 2343.9 1991.4 1545.2 1874.3 1655.1 1971.6 1967.6 2308.8 TRUE FALSE FALSE 2517.428049 2078.522894 2470.618324 2072.6179 1431.213674 1838.55085 1718.937761 2196.038975 1886.494695 2295.067155 1.096886443 0.905647963 1.076490646 0.903075056 0.623604269 0.801088041 0.748970573 0.956851729 0.821977994 1 11.16432065 -6.015794956 5.668155171 1.034894227 0.778719687 0.361835627 0.112361405 0.079320812 8.730780546 0.013308645 0.023161891 9.64E-07 6.015794956 -0.25617454 Y(ph)DGQHFSLAMS(ph)SNR ddPTM_HeLa_CUDC101_4h_R1 2 YDGQHFSLAMSSNR 14 0 A0A0A0MQV9;Q9UPS6-2;Q9UPS6 A0A0A0MQV9 SETD1B Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase SETD1B 2 0 Y(0.865)DGQHFS(0.136)LAMS(0.96)S(0.039)NR;Y(0.865)DGQHFS(0.136)LAMS(0.991)S(0.008)NR ; 60.161 0.029599 11918700 4897.2 7120.6 5173.9 7558.6 9669 9090.7 9009.1 5008.9 8930 9258.4 TRUE FALSE FALSE 4323.15764 7339.977246 5453.616684 7866.872379 8955.737133 8917.310044 9356.584005 5579.092929 8561.90162 9203.330625 0.469738382 0.797534887 0.592569897 0.854785371 0.973097403 0.968922057 1.016651948 0.606203684 0.930304687 1 13.16794034 -6.015791213 22.65018633 0.736315103 0.906755168 0.106557844 0.177005618 348.4241872 499767.0448 0.033196692 0.05625493 9.64E-07 6.015791213 0.170440065 NPYYGGESASITPLEDLYKR ddPTM_HeLa_CUDC101_4h_R1 2 NPYYGGESASITPLEDLYKR 20 1 P50395-2;P50395;Q5SX87;V9GYJ7;V9GYF8;Q5SX90 P50395-2 GDI2 Rab GDP dissociation inhibitor beta 0 0 ; ; 108.47 0.00018327 23087800 1667.14 1697.34 1343.83 1517.01 1808.14 1721.26 1814.59 1997.73 1696.9 2052.31 FALSE FALSE TRUE 1471.720376 1749.633034 1416.481515 1578.880225 1674.757115 1688.429833 1884.579344 2225.143508 1626.953064 2040.102769 0.721395215 0.857620048 0.694318706 0.773921907 0.820918015 0.82761999 0.923766867 1.090701675 0.797485837 1 10.99442611 -4.337578973 2.347381037 0.840296086 1.128305011 0.499611286 0.082675632 0.464479154 3.412238946 0.01640734 0.253075182 4.60E-05 4.337578973 0.288008926 NQAIYAAVDDDDDDAA ddPTM_HeLa_CUDC101_4h_R1 2 NQAIYAAVDDDDDDAA 16 0 Q9UK59-2;Q9UK59 Q9UK59-2 DBR1 Lariat debranching enzyme 0 0 ; ; 135.66 0.0022235 87614000 18586.8 16788 15213.8 14764.8 17537.9 16525.4 14810.1 15590.8 17817.5 16507.2 FALSE FALSE TRUE 16408.08348 17305.21838 16036.30405 15366.97236 16244.16406 16210.20553 15381.33052 17365.59365 17083.05511 16409.01444 0.999943265 1.054616561 0.977286241 0.936495755 0.989953669 0.987884165 0.937370771 1.058295958 1.041077462 1 14.00220097 KSLS(ph)DSESDDSK ddPTM_HeLa_CUDC101_4h_R1 2 KSLSDSESDDSK 12 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 KSLS(0.429)DS(0.429)ES(0.134)DDS(0.009)K;KSLS(0.754)DS(0.051)ES(0.196)DDSK ; 244.57 6.70E-55 512780000 5001.4 2245.5 5446.6 5731.4 3201.3 2638.1 3490.4 1902.54 4801.8 6057.9 TRUE FALSE FALSE 4415.143474 2314.681193 5741.059671 5965.151265 2965.146477 2587.782638 3625.025897 2119.117463 4603.867772 6021.867341 0.733185111 0.384379307 0.953368672 0.990581646 0.492396512 0.429730927 0.601977043 0.351903711 0.764524941 1 12.55599521 -6.01520066 0.112222349 1.278723147 2.09E-12 0.300722884 0.20166119 14.09961384 0.577813486 2.219701292 4.293147999 9.66E-07 6.01520066 -1.278723147 KDGS(ph)SPPLLEK ddPTM_HeLa_CUDC101_4h_R1 1 KDGSSPPLLEK 11 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;Q6W2J9-3 H7BYY2 BCOR BCL-6 corepressor 1 0 KDGS(0.856)S(0.144)PPLLEK 65.528 0.037444 95943000 4349.3 4043.8 4089.5 3752.1 4201.9 3728.1 3560.6 3756.2 4190.1 4204.4 TRUE FALSE FALSE 3839.481647 4168.384685 4310.59074 3905.126856 3891.934208 3656.992704 3697.933535 4183.790625 4017.382304 4179.392042 0.918669895 0.997366278 1.031391814 0.934376775 0.93122018 0.875005902 0.884801784 1.001052446 0.961236052 1 12.02907738 -6.014904383 23.58187259 0.969249289 0.918852828 0.283853715 0.042675645 405.6752684 641866.6656 0.007242262 0.012309494 9.66E-07 6.014904383 -0.050396461 ET(ph)WLIY(ph)KNT(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 ETWLIYKNTK 10 1 A0A0J9YW81;A0A669KBH3;A0A3F2YNY5;Q9H2S1-2;Q9H2S1 A0A0J9YW81 KCNN2 Small conductance calcium-activated potassium channel protein 2 3 0 ET(1)WLIY(1)KNT(1)K;ET(1)WLIY(1)KNT(1)K ; 60.157 0.0031523 10655000 1761.74 2073.54 1743.69 2184.5 3870.6 3399.8 2953.9 2207.87 2855.8 1693.98 TRUE FALSE FALSE 1555.231508 2137.42331 1837.959156 2273.593352 3585.073549 3334.954479 3067.832912 2459.204996 2738.082715 1683.904132 0.923586728 1.269326008 1.091486814 1.350191682 2.129024736 1.980489516 1.821857227 1.460418649 1.626032423 1 10.71759429 -6.014797089 3.109019131 1.000167811 1.853925691 0.521794477 0.273155672 0.07867562 1.557712364 0.029499879 0.053814873 9.67E-07 6.014797089 0.853757881 S(ph)SPGPDTLVVLEFNPASK ddPTM_HeLa_CUDC101_4h_R1 3 SSPGPDTLVVLEFNPASK 18 0 O60303 O60303 KIAA0556 Uncharacterized protein KIAA0556 1 0 S(0.5)S(0.5)PGPDTLVVLEFNPASK;S(0.5)S(0.5)PGPDTLVVLEFNPASK;S(0.5)S(0.5)PGPDTLVVLEFNPASK ;; 187.56 2.50E-11 27103300 5487.1 4524.92 3905.5 3631.68 4632.38 3816.83 3250.29 3223.64 4520.37 4541.7 TRUE FALSE FALSE 4843.910456 4664.327422 4116.643143 3779.795608 4290.658556 3744.030327 3375.654774 3590.606147 4334.038435 4514.685766 1.072923057 1.033145531 0.911833814 0.837222301 0.950378117 0.829300315 0.747705366 0.795316957 0.959986732 1 12.14040986 -6.014500939 0.771141659 1.036848624 0.780057692 0.712177514 0.054999863 0.242783201 0.274239052 0.010797803 0.032119627 9.67E-07 6.014500939 -0.256790932 SS(ph)PQHSLSNPLPR ddPTM_HeLa_CUDC101_4h_R1 1 SSPQHSLSNPLPR 13 0 Q86UE8-2;Q86UE8 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 0 S(0.24)S(0.739)PQHS(0.019)LS(0.001)NPLPR 80.371 0.030363 9754600 916.22 810.22 782.58 783.86 1079.7 1106.6 1070.7 844.62 951.01 695.96 TRUE FALSE FALSE 808.8220805 835.1819179 824.888642 815.8291989 1000.052682 1085.493449 1111.997258 940.7681267 911.8089653 691.820399 1.169121468 1.207223608 1.19234507 1.179249991 1.445538009 1.569039378 1.607349623 1.359844445 1.317985082 1 9.434253743 -6.014319936 0.456004787 1.042803773 1.602821075 0.521834222 0.126301845 0.478773706 0.17075398 0.030188824 0.115172162 9.68E-07 6.014319936 0.560017302 S(ph)PDEVTLTSIVPTR ddPTM_HeLa_CUDC101_4h_R1 2 SPDEVTLTSIVPTR 14 0 A0A0C4DGG1;Q9UKS6;H0YDM6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 S(1)PDEVTLTSIVPTR;S(1)PDEVTLTSIVPTR ; 204.28 3.25E-17 37136000 284.13 488.61 440.04 277.56 230.036 336.482 150.78 309.3 490.42 413.39 TRUE FALSE FALSE 250.8247121 503.663495 463.8298934 288.8800965 213.0667026 330.0641665 156.5956351 344.5094618 470.20468 410.9311379 0.610381373 1.225663982 1.128729003 0.702989065 0.518497342 0.803210407 0.381075126 0.838363001 1.144242031 1 8.682752843 -6.014251302 24.2707296 0.871900565 0.626825569 0.32407822 0.223174598 570.2994421 971253.2261 0.035206386 0.059959132 9.68E-07 6.014251302 -0.245074996 T(ph)TPDQELAPASEPVWERPWSVEEIRR ddPTM_HeLa_CUDC101_4h_R1 2 TTPDQELAPASEPVWERPWSVEEIRR 26 2 Q641Q2;Q641Q2-2;E7ESD2;A0A087WYF6;Q5T1D7 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 T(0.5)T(0.5)PDQELAPASEPVWERPWSVEEIRR;T(0.5)T(0.5)PDQELAPASEPVWERPWSVEEIRR ; 85.525 1.95E-05 63370000 1248.91 1257.17 1090.3 1218.29 1775.99 1195.26 990.4 1262.66 1419.12 1252.41 TRUE FALSE FALSE 1102.514663 1295.901918 1149.244916 1267.977132 1644.978756 1172.462407 1028.60006 1406.396111 1360.623273 1244.96061 0.885581965 1.040918008 0.923117492 1.018487752 1.321309882 0.941766669 0.826210927 1.129671172 1.092904677 1 10.28188438 -6.01420746 24.81408458 0.952502279 1.047790666 0.017080288 0.133035277 1063.164512 1856876.762 0.019207602 0.032727403 9.68E-07 6.01420746 0.095288386 YLS(ph)FTPPEK ddPTM_HeLa_CUDC101_4h_R1 2 YLSFTPPEK 9 0 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 YLS(0.64)FT(0.36)PPEK;YLS(0.885)FT(0.115)PPEK ; 108.47 0.010983 351854000 9103.9 6546.6 6940.4 6561.3 5957.1 6792.4 6289.9 4792.8 5503.8 6960.9 TRUE FALSE FALSE 8036.754643 6748.292986 7315.619018 6828.898174 5517.656601 6662.846287 6532.50355 5338.392979 5276.931034 6919.496257 1.161465278 0.975257842 1.057247341 0.986906838 0.797407267 0.962909154 0.944072127 0.771500234 0.762617803 1 12.7564513 -6.013574527 3.71608342 1.067120937 0.880748645 0.03635977 0.12043964 0.138669851 4.170182723 0.012637542 0.022666854 9.69E-07 6.013574527 -0.186372292 IYQY(ph)IQSR ddPTM_HeLa_CUDC101_4h_R1 3 IYQYIQSR 8 0 A0A2R8Y443;A0A2R8YDF3;A0A2R8Y6L5;A0A2R8Y6I6;Q13627-4;Q13627-3;Q13627-5;Q9Y463-2;Q9Y463-3;Q9Y463;Q13627-2;Q13627 A0A2R8Y443 DYRK1A;DYRK1B Dual specificity tyrosine-phosphorylation-regulated kinase 1A;Dual specificity tyrosine-phosphorylation-regulated kinase 1B 1 0 IYQY(1)IQSR;IYQY(1)IQSR;IYQY(1)IQSR ;; 185.55 3.21E-08 711828000 6098.8 5477 5405.4 5035.3 5202.3 4749.5 4871.1 5523.3 5850.2 5577.5 TRUE FALSE FALSE 5383.907909 5645.739878 5697.632274 5240.661298 4818.536693 4658.911201 5058.979959 6152.050146 5609.05228 5544.324782 0.971066473 1.018291695 1.027651247 0.945229853 0.869093511 0.840302721 0.912460968 1.109612151 1.01167455 1 12.43679606 -6.013568255 22.87096839 0.991482576 0.922593447 0.188612595 0.069019309 268.7378899 452994.5497 0.010166238 0.017370682 9.69E-07 6.013568255 -0.068889129 DLGYSNYGPS(ph)IAYQTK ddPTM_HeLa_CUDC101_4h_R1 1 DLGYSNYGPSIAYQTK 16 0 O94991-2;O94991 O94991-2 SLITRK5 SLIT and NTRK-like protein 5 1 0 DLGY(0.001)S(0.001)NY(0.001)GPS(0.993)IAY(0.004)QTK 75.416 0.023575 56980000 3001.4 2686.8 2698.8 2587.4 2772.2 2599.1 2558.7 2583.8 3082.5 2903 TRUE FALSE FALSE 2649.580442 2769.577123 2844.705291 2692.925356 2567.700329 2549.526498 2657.389916 2877.929348 2955.438045 2885.732827 0.918165541 0.959748282 0.985782629 0.933185959 0.889791427 0.883493605 0.920871777 0.997295841 1.024155119 1 11.49472202 -6.013200557 22.73098143 0.961788904 0.918856296 0.261783813 0.040105616 242.0620282 416827.6184 0.006287848 0.010761562 9.70E-07 6.013200557 -0.042932608 DPEIEMSGGLVNGS(ph)S(ph)VTVSCK ddPTM_HeLa_CUDC101_4h_R1 1 DPEIEMSGGLVNGSSVTVSCK 21 0 P19320-2;P19320-3;P19320 P19320-2 VCAM1 Vascular cell adhesion protein 1 2 0 DPEIEMSGGLVNGS(0.916)S(0.451)VT(0.34)VS(0.293)CK 53.554 0.036935 7683400 1570.5 2174.8 1442.3 2099.1 2842.9 2663.8 2104.2 1705.8 2348.5 2269.2 TRUE FALSE FALSE 1386.408371 2241.80301 1520.275101 2184.710371 2633.184931 2612.992453 2185.359699 1899.981377 2251.693836 2255.702697 0.614623714 0.993837979 0.673969625 0.968527623 1.167345738 1.158393992 0.968815483 0.842301328 0.998222788 1 11.13936122 -6.013131326 23.31098242 0.81963009 1.042103294 0.217311259 0.152486968 265.425147 471190.8092 0.026302405 0.045024548 9.70E-07 6.013131326 0.222473205 PNNSGEAPSS(ph)PTPK ddPTM_HeLa_CUDC101_4h_R1 3 PNNSGEAPSSPTPK 14 0 P49916-4;P49916-2;P49916-3;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 PNNSGEAPS(0.106)S(0.862)PT(0.032)PK;PNNSGEAPS(0.002)S(0.985)PT(0.013)PK;PNNSGEAPS(0.011)S(0.985)PT(0.005)PK ;; 160.63 4.58E-05 44881000 21777.3 16254.8 15965.5 16655.3 12389.6 12590.8 11480.1 9521.5 14742.2 22386.3 TRUE FALSE FALSE 19224.59791 16755.59112 16828.64322 17334.57512 11475.64389 12350.65147 11922.8913 10605.38907 14134.52028 22253.14529 0.863904749 0.752953836 0.756236613 0.778971911 0.515686378 0.555007003 0.535784544 0.47657933 0.63516955 1 14.44172164 -6.013119528 0.316912206 1.00910606 0.34851083 0.442308146 0.121215998 0.441532137 0.077093627 0.028813454 0.106301864 9.70E-07 6.013119528 -0.660595231 QES(ph)DEESRPQNANYPR ddPTM_HeLa_CUDC101_4h_R1 1 QESDEESRPQNANYPR 16 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 QES(0.997)DEES(0.003)RPQNANYPR 68.525 0.019569 12839000 1285.7 1079.1 1047.4 1204.8 1518.6 1164.5 1268.6 1144.1 1210.9 1283.9 TRUE FALSE FALSE 1134.992195 1112.345792 1104.025612 1253.936952 1406.575903 1142.289103 1317.530327 1274.339719 1160.986189 1276.263306 0.889308805 0.871564502 0.86504533 0.982506467 1.102104791 0.895026205 1.032334253 0.998492798 0.909676071 1 10.31771029 -6.012890107 24.85215666 0.933402265 1.005990362 0.341493223 0.06143309 723.4904477 1394894.09 0.010373131 0.017759424 9.71E-07 6.012890107 0.072588097 QGPVS(ph)PGPAPPPSFIMSYK ddPTM_HeLa_CUDC101_4h_R1 1 QGPVSPGPAPPPSFIMSYK 19 0 P29375 P29375 KDM5A Lysine-specific demethylase 5A 1 0 QGPVS(1)PGPAPPPSFIMSYK 133.95 1.47E-06 0 1193.3 719.87 949.69 805.63 822.82 834.73 914.61 514.08 725.57 805.68 TRUE FALSE FALSE 1053.423183 742.0483414 1001.033114 838.4870736 762.1222079 818.808916 949.8868141 572.6007892 695.6616975 800.8877795 1.315319337 0.926532231 1.249904343 1.046947019 0.95159675 1.022376589 1.186042337 0.714957581 0.868613201 1 9.645456296 -6.012509674 16.63394911 1.139749085 0.989490926 0 0.17262197 10.60460239 14104.68677 0.024475734 0.042073268 9.72E-07 6.012509674 -0.150258159 NQGGYGGSSSSSSYGSGR ddPTM_HeLa_CUDC101_4h_R1 5 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-3;P09651-2;P09651;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 0 ;;;; ;;;; 325.77 4.84E-167 21578210 1929.89 1794.27 2073.89 1868.714 1757.21 1765.57 1955.94 2267.592 2058.93 2260.6 FALSE FALSE TRUE 1703.67122 1849.549332 2186.010767 1944.928234 1627.584119 1731.894694 2031.381261 2525.725507 1974.060034 2247.153851 0.75814623 0.823063063 0.972790878 0.865507377 0.72428691 0.770705884 0.90397961 1.123966437 0.878471242 1 11.13388319 -9.592154205 1.404030629 0.999482463 0.848515532 0 0.117495516 0.573415932 2.038787786 0.080462151 0.018950595 2.56E-10 9.592154205 -0.150966932 S(ph)PSFGDPQLS(ph)PEARPR ddPTM_HeLa_CUDC101_4h_R1 4 SPSFGDPQLSPEARPR 16 1 O95425-3;O95425-2 O95425-3 SVIL Supervillin 2 0 S(0.813)PS(0.187)FGDPQLS(1)PEARPR;S(0.963)PS(0.037)FGDPQLS(1)PEARPR;S(0.992)PS(0.008)FGDPQLS(1)PEARPR;S(0.918)PS(0.082)FGDPQLS(0.999)PEARPR ;;; 133.96 0.002917 123747000 6898.8 6132.2 6741.3 5840.8 5953.5 5906 5594.8 6164.48 8465.6 6449.6 TRUE FALSE FALSE 6090.133122 6321.125814 7105.755069 6079.01307 5514.322166 5793.35289 5810.59331 6866.219486 8116.644385 6411.237492 0.949915384 0.985944729 1.108328163 0.948180921 0.86010262 0.903624752 0.906313846 1.07096633 1.266002764 1 12.64638714 -6.011241076 24.94021138 0.987472812 0.927577796 0.081670342 0.10949605 763.4573118 1693862.905 0.00977823 0.016880423 9.74E-07 6.011241076 -0.059895016 TLQPPES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 TLQPPESPR 9 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 TLQPPES(1)PR;T(0.002)LQPPES(0.998)PR ; 128.68 0.0036086 205319000 7169.6 7026.3 6637.4 6451 6581.1 6709.7 6231.4 6855.7 6749.5 7274.9 TRUE FALSE FALSE 6329.190356 7242.771975 6996.237921 6714.099664 6095.625364 6581.723652 6471.747185 7636.125176 6471.282753 7231.628571 0.875209546 1.001540926 0.967449842 0.928435358 0.842911843 0.910130213 0.894922509 1.055934372 0.894858287 1 12.82010487 -6.010148916 24.47660557 0.946916746 0.918006059 0.022025412 0.062716415 1177.892027 2840788.223 0.010204602 0.017705647 9.77E-07 6.010148916 -0.028910688 NQK(ac)LTATTQK ddPTM_HeLa_CUDC101_4h_R1 2 NQKLTATTQK 10 1 P12270 P12270 TPR Nucleoprotein TPR 0 1 ; NQK(1)LTATTQK;NQK(1)LTATTQK 242.35 1.33E-27 47290000 14054.7 11216.2 10916.5 11883.1 11700 11498.9 11878.9 12090.6 11040.4 9336.2 FALSE TRUE FALSE 12407.22937 11561.75783 11506.67901 12367.74418 10836.91431 11279.57764 12337.07315 13466.94503 10585.31004 9280.667867 1.33688971 1.245789419 1.239854628 1.332635146 1.167686902 1.215384259 1.329330316 1.45107499 1.140576324 1 13.18001291 -9.340345747 0.838680841 0.981289389 1.2872657 0.481716984 0.086241473 0.350469606 0.39734423 0.072340815 0.014996283 4.57E-10 9.340345747 0.30597631 GAAQENGAPECS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 GAAQENGAPECSPR 14 0 Q6IE81-2;Q6IE81;Q6IE81-3 Q6IE81-2 JADE1 Protein Jade-1 1 0 GAAQENGAPECS(1)PR 79.614 0.026817 3320800 776.63 607.37 884.38 655.7 526.8 521.2 706.25 730 1089.1 870.65 TRUE FALSE FALSE 685.5946087 626.0823498 932.1922579 682.4422802 487.9390135 511.2589784 733.4902991 813.1002492 1044.206837 865.4713351 0.792163277 0.723400446 1.077092008 0.788520951 0.563784141 0.590728956 0.847503862 0.939488365 1.206518107 1 9.757342227 -6.009592426 24.78915528 0.896726736 0.725940867 0.252486464 0.168849155 490.4642069 1267483.66 0.022537201 0.039244598 9.78E-07 6.009592426 -0.17078587 VPS(ph)WGLEDNVVCSQPAR ddPTM_HeLa_CUDC101_4h_R1 2 VPSWGLEDNVVCSQPAR 17 0 H7C3L5;B8ZZD4;Q86VP1-3;Q86VP1-4;Q86VP1-2;Q86VP1 H7C3L5 TAX1BP1 Tax1-binding protein 1 1 0 VPS(1)WGLEDNVVCSQPAR;VPS(1)WGLEDNVVCSQPAR ; 156.67 6.29E-05 20640500 954.59 971.25 654.55 931.97 1164.24 1125.5 1028.08 838.51 1143.88 873.08 TRUE FALSE FALSE 842.6944073 1001.173061 689.9369529 969.9797649 1078.356335 1104.032963 1067.73339 933.962589 1096.728782 867.8868813 0.970972629 1.153575521 0.794961841 1.11763386 1.242507933 1.272093157 1.230267922 1.076134009 1.263677106 1 9.761363207 -6.009185405 17.59579127 0.986723531 1.207846451 0.235235087 0.128421072 4.636079359 8883.225589 0.012857647 0.022361001 9.79E-07 6.009185405 0.22112292 DYIVVGS(ph)DSGR ddPTM_HeLa_CUDC101_4h_R1 1 DYIVVGSDSGR 11 0 Q15393;J3QRB2;J3QL37;Q15393-2 Q15393 SF3B3 Splicing factor 3B subunit 3 1 0 DYIVVGS(0.5)DS(0.5)GR 91.069 0.023422 64472000 5302.5 3166.5 1520.2 2720.4 3119.1 3576.5 2549.3 2764.7 1286.7 545.5 TRUE FALSE FALSE 4680.948988 3264.056112 1602.38661 2831.349671 2889.010207 3508.284221 2647.627355 3079.422273 1233.661681 542.2553417 8.632370449 6.019407944 2.955040711 5.221432511 5.327767169 6.469801127 4.882621066 5.678915514 2.275056761 1 9.08282855 -6.008982334 22.05123099 4.684824107 5.561185158 0.074329005 2.027206717 402.6840422 988595.0095 0.436891532 0.762180831 9.80E-07 6.008982334 0.876361051 NQPEK(ac)TCVR ddPTM_HeLa_CUDC101_4h_R1 1 NQPEKTCVR 9 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 0 1 NQPEK(1)TCVR 131.62 0.0027392 1035000 203.11 137.13 155.85 256.69 153.56 175.29 129.51 193.22 0 0 FALSE TRUE FALSE 179.3017537 141.3548128 164.2757224 267.1589277 142.2321847 171.9466353 134.5052441 215.2153838 0 0 0 S(ph)QDSYPGSPSLS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SQDSYPGSPSLSPR 14 0 A0A0D9SEU5;R4GMX8;Q6VN20-2;Q6VN20-3;Q6VN20 A0A0D9SEU5 RANBP10 Ran-binding protein 10 2 0 S(0.62)QDS(0.293)YPGS(0.087)PSLS(1)PR 186.17 4.88E-10 23268000 5105.9 4528 3964.2 4399.1 5366.1 4750.9 4191.7 4021.3 4740.4 4571.1 TRUE FALSE FALSE 4507.394142 4667.502313 4178.516643 4578.514313 4970.253494 4660.284498 4353.375273 4479.068537 4544.998706 4543.910894 0.991963585 1.027199349 0.919585956 1.007615338 1.093827236 1.02561089 0.958067923 0.985729835 1.0002394 1 12.14971883 -6.008080831 24.99030183 0.992393503 1.017176809 0.089612962 0.041305183 863.765948 2671242.886 0.006214135 0.010888845 9.82E-07 6.008080831 0.024783307 SPITS(ph)SPPK ddPTM_HeLa_CUDC101_4h_R1 1 SPITSSPPK 9 0 G3V5T8;Q52LA3 G3V5T8 LIN52 Protein lin-52 homolog 1 0 SPIT(0.017)S(0.592)S(0.39)PPK 91.636 0.026366 76760000 4403.7 3855.5 4008.7 3709.4 3777 3948.8 3549 3658.1 3654 4109.5 TRUE FALSE FALSE 3887.504962 3974.283385 4225.422448 3860.685365 3498.378235 3873.483219 3685.886119 4074.523317 3503.380573 4085.056511 0.951640437 0.972883331 1.034360831 0.945075143 0.856384294 0.948207989 0.902285221 0.99742153 0.857608839 1 11.99614032 -6.008072945 24.98499548 0.980512602 0.922803111 0.048849056 0.055065681 341.2693924 1056202.357 0.005770362 0.010124034 9.82E-07 6.008072945 -0.057709491 ENAS(ph)PAPGTTAEEAMSR ddPTM_HeLa_CUDC101_4h_R1 6 ENASPAPGTTAEEAMSR 17 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 ENAS(0.996)PAPGTT(0.003)AEEAMSR;ENAS(0.996)PAPGT(0.003)T(0.001)AEEAMSR;ENAS(0.956)PAPGT(0.001)T(0.043)AEEAMSR;ENAS(0.965)PAPGTT(0.035)AEEAMSR;ENAS(0.964)PAPGT(0.002)T(0.033)AEEAMSR;ENAS(1)PAPGTTAEEAMSR ;;;;; 215.64 3.23E-24 250649200 17706 14120 14035.3 13253.6 13158.2 12944.3 12713.4 9493.1 14660.9 15571.1 TRUE FALSE FALSE 15630.52952 14555.02046 14794.09077 13794.13909 12187.5458 12697.40904 13203.7601 10573.75613 14056.5715 15478.4824 1.009823128 0.940338987 0.95578432 0.891181625 0.787386352 0.820326484 0.853039707 0.683126152 0.908136284 1 13.91797641 -6.007108631 0.735579227 1.007036261 0.761004768 0.707834879 0.052108678 0.190564624 0.193886192 0.007748244 0.023908512 9.84E-07 6.007108631 -0.246031494 KCSPGSPTDPNAT(ph)LSK ddPTM_HeLa_CUDC101_4h_R1 1 KCSPGSPTDPNATLSK 16 1 Q9P0K8-2;Q9P0K8 Q9P0K8-2 FOXJ2 Forkhead box protein J2 1 0 KCS(0.002)PGS(0.013)PT(0.061)DPNAT(0.827)LS(0.097)K 72.523 0.0030597 0 2442.4 2485.8 3117.7 2373.2 2540.6 2454.8 2267.1 2193.8 2900.8 2872 TRUE FALSE FALSE 2156.105574 2562.384552 3286.252293 2469.989354 2353.185 2407.97878 2354.542806 2443.533324 2781.227796 2854.917216 0.755225252 0.897533749 1.151084968 0.865170219 0.824256825 0.843449599 0.824732428 0.85590339 0.974188597 1 11.4792332 -6.00668148 24.89639753 0.905515204 0.837664718 0.170148059 0.098646755 711.2857377 2650396.078 0.018170422 0.032081923 9.85E-07 6.00668148 -0.067850486 T(ph)Y(ph)T(ph)WLK ddPTM_HeLa_CUDC101_4h_R1 1 TYTWLK 6 0 Q6YHK3-2;Q6YHK3-4;Q6YHK3 Q6YHK3-2 CD109 CD109 antigen 3 0 T(1)Y(1)T(1)WLK 66.258 0.028524 37382000 241.49 174.58 124.31 220.71 264.27 275.09 288.1 154.64 188.54 208.54 TRUE FALSE FALSE 213.1829083 179.9586029 131.0305746 229.7115078 244.7753286 269.8431166 299.2121135 172.2435925 180.7683014 207.2995948 1.028380728 0.868108802 0.63208312 1.108113636 1.180780545 1.301705953 1.443380117 0.830892085 0.872014736 1 7.695573486 -6.006597913 22.30198068 0.969994249 1.206516288 0.340190091 0.185848138 75.36913245 254767.2981 0.027015101 0.047605937 9.85E-07 6.006597913 0.236522039 ALS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 1 ALSPVR 6 0 Q02535 Q02535 ID3 DNA-binding protein inhibitor ID-3 1 0 ALS(1)PVR 95.352 0.036779 26788000 9795.6 3810.7 2519.1 4886.3 3172.9 2746.3 2399.6 1585.7 2633.5 2748.8 TRUE FALSE FALSE 8647.374617 3928.10315 2655.290166 5085.584434 2938.841488 2693.918903 2492.153376 1766.209678 2524.946015 2732.450015 3.16469636 1.437575483 0.971761661 1.86118114 1.075533485 0.985898695 0.912058176 0.646383161 0.924059361 1 11.41597939 -6.006025638 0.958175037 1.976875729 0.823490124 0.070472671 0.673279624 0.63812958 1.144644182 0.153041722 0.400409041 9.86E-07 6.006025638 -1.153385605 VGIDT(ph)PDIDIHGPEGK ddPTM_HeLa_CUDC101_4h_R1 3 VGIDTPDIDIHGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VGIDT(1)PDIDIHGPEGK;VGIDT(1)PDIDIHGPEGK;VGIDT(1)PDIDIHGPEGK ;; 131.72 0.0022332 92670000 17540.7 10046.6 9590.7 10448.6 10322.4 7284.9 7236.3 6236.1 9999.7 11436.1 TRUE FALSE FALSE 15484.60574 10356.12384 10109.20225 10874.73907 9560.937117 7145.95267 7515.406515 6945.992417 9587.508134 11368.07757 1.362112956 0.910982862 0.889262251 0.956603173 0.841033768 0.628598162 0.661097399 0.611008535 0.843371104 1 13.47270068 -6.005532605 0.809153583 1.159528541 0.615500928 0.457705337 0.154323152 0.312639109 0.391419397 0.03058916 0.088968299 9.87E-07 6.005532605 -0.544027613 NQTAEK(ac)EEFEHQQK ddPTM_HeLa_CUDC101_4h_R1 2 NQTAEKEEFEHQQK 14 1 P11142;E9PKE3;E9PNE6;A8K7Q2;E9PS65;E9PM13 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 1 ; NQTAEK(1)EEFEHQQK;NQTAEK(1)EEFEHQQK 193.98 9.34E-15 13902400 3074.5 883.06 1201.58 880.56 1598.83 1823.95 2060.33 1785.98 1896.21 1619.34 FALSE TRUE FALSE 2714.111771 910.2660319 1266.541049 916.4730429 1480.887496 1789.161193 2139.797618 1989.288744 1818.047421 1609.708094 1.68608941 0.565485156 0.786814115 0.569341141 0.919972697 1.111481765 1.329307858 1.235807133 1.129426775 1 10.65258338 -7.26196734 24.99999756 1.323986661 0.933521052 0.218285092 0.290416506 57.37807755 2716951.673 0.060845622 0.071844069 5.47E-08 7.26196734 -0.390465608 SQSSEGVSS(ph)LS(ph)SSPSNSLETQSQSLSR ddPTM_HeLa_CUDC101_4h_R1 1 SQSSEGVSSLSSSPSNSLETQSQSLSR 27 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 2 0 S(0.001)QS(0.002)S(0.004)EGVS(0.334)S(0.409)LS(0.409)S(0.391)S(0.391)PS(0.053)NS(0.007)LETQSQSLSR 71.927 0.00061832 11784000 1978.1 1303.9 1175.9 1602.2 1916.3 1990.7 1674.7 1242.5 1625.7 1551.7 TRUE FALSE FALSE 1746.230117 1344.071613 1239.472711 1667.544641 1774.938367 1952.730714 1739.29374 1383.941178 1558.687958 1542.470419 1.132099582 0.871375941 0.803563359 1.08108695 1.150711446 1.265976118 1.127602655 0.897223804 1.010514003 1 10.59102711 -6.005509505 24.84900308 1.025187756 1.121869973 0.164080618 0.125360482 441.002573 1989030.66 0.020570454 0.036498926 9.87E-07 6.005509505 0.096682217 NQVAMNPTNTVFDAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 NQVAMNPTNTVFDAKR 16 1 P11142;E9PKE3;P11142-2;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 1 NQVAMNPTNTVFDAK(1)R 146.59 0.0034502 600720 142.46 210.32 53.346 122.71 373.34 127.7 211.68 367.89 141.54 0 FALSE TRUE FALSE 125.7610548 216.7997099 56.23004612 127.7146442 345.799452 125.2643353 219.8445685 409.7691105 135.7056613 0 0 NQVGDENWR ddPTM_HeLa_CUDC101_4h_R1 1 NQVGDENWR 9 0 Q92973-3;Q92973-2;Q92973;S4R398 Q92973-3 TNPO1 Transportin-1 0 0 126.07 0.00154 0 2549.8 1854.2 1538.8 1758.1 1743 1952.7 1778.5 1583.4 1825.8 1322.6 FALSE FALSE TRUE 2250.916309 1911.325704 1621.992183 1829.802917 1614.422363 1915.455501 1847.097341 1763.647856 1750.539751 1314.733116 1.7120709 1.453774671 1.233704516 1.391767572 1.22794683 1.456915839 1.404921895 1.341449328 1.331479164 1 10.36055425 -9.606096731 1.426425712 1.001403887 1.439431567 0.12167841 0.164769902 0.275850122 1.012523134 0.113826681 0.026610533 2.48E-10 9.606096731 0.438027681 RSAS(ph)PDDDLGSSNWEAADLGNEERK ddPTM_HeLa_CUDC101_4h_R1 1 RSASPDDDLGSSNWEAADLGNEERK 25 2 E9PM92;O00193;E9PQA1 E9PM92 C11orf58;SMAP Small acidic protein 1 0 RS(0.027)AS(0.969)PDDDLGS(0.003)S(0.001)NWEAADLGNEERK 53.088 0.017685 12642000 2173.4 1636.1 1596.6 1776.1 2367 1805.2 1812.4 1673.8 1649.4 1613.5 TRUE FALSE FALSE 1918.637347 1686.506302 1682.917025 1848.537035 2192.391126 1770.768818 1882.304875 1864.338626 1581.411034 1603.90283 1.196230414 1.051501544 1.049263705 1.15252433 1.366910192 1.104037467 1.173577875 1.162376293 0.985976834 1 10.64737103 -6.004696146 24.99223553 1.088863752 1.201109699 0.370640136 0.084938379 230.7040743 1227787.008 0.014018216 0.024934983 9.89E-07 6.004696146 0.112245947 NQVLVFVHSR ddPTM_HeLa_CUDC101_4h_R1 2 NQVLVFVHSR 10 0 O75643;A0A494C1A5 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 ; ; 92.611 0.010667 1912370 1655.78 1164.88 1190.65 1161.46 1039.39 1371.59 1119.63 1109.67 916.54 703.89 FALSE FALSE TRUE 1461.691978 1200.768572 1255.020141 1208.829359 962.7162705 1345.429206 1162.814504 1235.990347 878.7598333 699.703231 2.089017049 1.71611123 1.793646342 1.727631524 1.375892275 1.922856929 1.661868136 1.766449393 1.255903638 1 9.450599343 -9.466221468 1.185968061 0.997223581 1.779718099 0.634601821 0.187412062 0.212389307 0.531384464 0.136319449 0.033125584 3.42E-10 9.466221468 0.782494518 LMLPDS(ph)PLVEEGR ddPTM_HeLa_CUDC101_4h_R1 1 LMLPDSPLVEEGR 13 0 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 LMLPDS(1)PLVEEGR 130.66 0.0010869 4880500 2248.7 2201 1800.7 2218 2731.1 2384.4 2688.1 1941.6 2217.9 2281.8 TRUE FALSE FALSE 1985.110795 2268.810201 1898.051289 2308.459627 2529.632194 2338.921543 2791.780917 2162.623896 2126.477223 2268.227752 0.875181424 1.000256786 0.836799253 1.017737141 1.115246117 1.031166972 1.230820368 0.953442128 0.937506042 1 11.14734979 -6.00458835 6.53383815 0.937292508 1.087367084 0.446063266 0.080206094 0.102598327 21.63082329 0.011863433 0.02080576 9.89E-07 6.00458835 0.150074576 SSS(ph)KDSRPSQAAGDNQGDEAK ddPTM_HeLa_CUDC101_4h_R1 1 SSSKDSRPSQAAGDNQGDEAK 21 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.086)S(0.086)S(0.698)KDS(0.11)RPS(0.019)QAAGDNQGDEAK 62.648 0.011893 4200100 973.85 813.21 1047.9 757.32 599.46 741.98 678.01 686.7 844.22 952.81 TRUE FALSE FALSE 859.6967793 838.2640362 1104.552644 788.206783 555.2390301 727.8279677 704.1610728 764.8711523 809.4208943 947.1426437 0.907674029 0.885045185 1.166194608 0.832194378 0.586225352 0.768445991 0.743458314 0.807556451 0.854592389 1 9.887437908 -6.004168176 24.99016964 0.964680135 0.727961377 0.575635456 0.09584881 88.58687343 531126.1185 0.012985451 0.023137948 9.90E-07 6.004168176 -0.236718758 LSVPTS(ph)DEEDEVPAPKPR ddPTM_HeLa_CUDC101_4h_R1 8 LSVPTSDEEDEVPAPKPR 18 1 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 LS(0.003)VPT(0.053)S(0.944)DEEDEVPAPKPR;LSVPT(0.16)S(0.84)DEEDEVPAPKPR;LSVPT(0.038)S(0.962)DEEDEVPAPKPR;LSVPT(0.031)S(0.969)DEEDEVPAPKPR;LSVPT(0.046)S(0.953)DEEDEVPAPKPR;LSVPT(0.06)S(0.94)DEEDEVPAPKPR;LS(0.005)VPT(0.217)S(0.777)DEEDEVPAPKPR;LSVPT(0.034)S(0.966)DEEDEVPAPKPR ;;;;;;; 218.88 4.06E-33 2886653000 18275.2 19340.1 18920.52 17486.37 17832.22 17099.3 16332.49 18492.6 18036.46 21454.6 TRUE FALSE FALSE 16133.00876 19935.94556 19943.42054 18199.53975 16516.77266 16773.15934 16962.43961 20597.72283 17292.98948 21326.98709 0.756459818 0.934775525 0.93512602 0.853357283 0.774454103 0.786475805 0.795350958 0.965805566 0.810850094 1 14.38039255 -6.003786834 24.07075381 0.890200875 0.823493587 0.097558829 0.080662337 203.8933661 1296063.391 0.015231473 0.027158326 9.91E-07 6.003786834 -0.066707288 GLLASDLNTDGDMRVT(ph)PEPGAGPTQGLLR ddPTM_HeLa_CUDC101_4h_R1 4 GLLASDLNTDGDMRVTPEPGAGPTQGLLR 29 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9;V9GYX5;C9JVY3;V9GY85;H7C3H1 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 GLLAS(0.014)DLNT(0.136)DGDMRVT(0.848)PEPGAGPT(0.003)QGLLR;GLLAS(0.026)DLNT(0.036)DGDMRVT(0.916)PEPGAGPT(0.021)QGLLR;GLLASDLNT(0.002)DGDMRVT(0.994)PEPGAGPT(0.003)QGLLR;GLLAS(0.003)DLNT(0.012)DGDMRVT(0.985)PEPGAGPTQGLLR ;;; 76.799 3.34E-05 175146000 9800.8 8879.5 8154.9 8670.9 10784.6 9386.8 8427.5 7841.5 9283.5 9029.2 TRUE FALSE FALSE 8651.965081 9153.06687 8595.778561 9024.536781 9989.041544 9207.762429 8752.551498 8734.144664 8900.830201 8975.493917 0.963954203 1.019784199 0.957694211 1.005464085 1.112923883 1.025878076 0.975160986 0.973110198 0.991681381 1 13.13177562 -6.002700941 24.99807018 0.984055506 1.023790395 0.148010296 0.03945927 154.328497 1428382.389 0.006085129 0.010886871 9.94E-07 6.002700941 0.039734889 NREEEWDPEYTPK ddPTM_HeLa_CUDC101_4h_R1 1 NREEEWDPEYTPK 13 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 0 84.169 0.031507 17798000 1945.6 2132 2282.5 2016.5 2216.4 2311 1850 1998.9 2685.4 2550.4 FALSE FALSE TRUE 1717.539717 2197.684393 2405.898854 2098.741586 2052.900588 2266.921525 1921.35512 2226.446696 2574.706675 2535.230107 0.677468965 0.866857958 0.948986385 0.827830807 0.809749214 0.894167957 0.757862221 0.878203004 1.015571197 1 11.30790098 -9.656440631 1.511830787 0.9995952 0.81169669 0.449744598 0.074174845 0.327899135 1.352849642 0.061004853 0.013869906 2.21E-10 9.656440631 -0.18789851 NREILDESLR ddPTM_HeLa_CUDC101_4h_R1 2 NREILDESLR 10 1 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 0 ; ; 149.33 0.0001536 7961800 4565.2 3893.8 4238.6 3751.7 5201.8 4769.9 4256.2 4650.4 4723.1 3871.7 FALSE FALSE TRUE 4030.074176 4013.763363 4467.751537 3904.710542 4818.073577 4678.922105 4420.36306 5179.782738 4528.411819 3848.670956 1.04713399 1.042895952 1.160855679 1.014560763 1.251879839 1.215724118 1.148542733 1.345862714 1.176617038 1 11.91014462 -1 0.205027273 0.984953342 2.573962808 0.411596857 0.082568738 18.7266008 0.217345402 0.050515994 9.711121372 0.1 1 1.589009466 LQALAEEPS(ph)QPHTRSPAK ddPTM_HeLa_CUDC101_4h_R1 1 LQALAEEPSQPHTRSPAK 18 1 Q5VV41 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 LQALAEEPS(0.633)QPHT(0.312)RS(0.056)PAK 62.055 0.017043 13931000 4498.3 4486.5 4176.8 4590.8 5718.4 4949.6 4183.8 4929.6 4957.2 5218.7 TRUE FALSE FALSE 3971.016093 4624.723747 4402.610442 4778.032667 5296.565025 4855.194627 4345.170567 5490.765738 4752.862118 5187.65894 0.765473625 0.891485697 0.848669986 0.921038318 1.020993301 0.935912457 0.837597579 1.058428436 0.916186313 1 12.34086792 -6.001765282 24.44679325 0.883917091 0.954646059 0.186362125 0.076856408 98.6351285 1366019.491 0.014810337 0.026551419 9.96E-07 6.001765282 0.070728969 AES(ph)PESSAIESTQSTPQK ddPTM_HeLa_CUDC101_4h_R1 4 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 AES(0.962)PES(0.035)S(0.003)AIESTQSTPQK;AES(0.861)PES(0.133)S(0.005)AIESTQSTPQK;AES(0.999)PES(0.001)SAIESTQSTPQK;AES(0.998)PES(0.002)SAIESTQSTPQK ;;; 320.06 1.87E-167 534282200 24376 19808 21362.8 19743.7 20457 21638.2 21364.3 14913.2 18475.8 20812.7 TRUE FALSE FALSE 21518.68223 20418.261 22517.73759 20548.93343 18947.92787 21225.48739 22188.32821 16610.85841 17714.2197 20688.90513 1.040107347 0.986918393 1.088396773 0.993234455 0.915849715 1.025935749 1.072474743 0.802887262 0.856218325 1 14.33656968 -6.001125767 24.99840697 1.022096248 0.966183564 0 0.088333848 67.88122516 1507427.255 0.009783287 0.017578431 9.97E-07 6.001125767 -0.055912684 AGS(ph)PSRDVGPSLGLK ddPTM_HeLa_CUDC101_4h_R1 2 AGSPSRDVGPSLGLK 15 1 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-9;Q8TEW0-8;Q5VWU8;Q8TEW0-10;F5GZI3 Q5VWV2;F5GZI3 PARD3 Partitioning defective 3 homolog 1 0 AGS(0.842)PS(0.156)RDVGPS(0.002)LGLK;AGS(0.876)PS(0.124)RDVGPSLGLK ; 134.93 0.0028201 76072000 4424.5 4596.2 3704.5 4186.9 4928.7 4631.7 4142.4 4256.1 4551.1 4421.2 TRUE FALSE FALSE 3905.866817 4737.803474 3904.776476 4357.659879 4565.11962 4543.358039 4302.173756 4740.59722 4363.501732 4394.902506 0.888726613 1.078022429 0.88847852 0.991525949 1.038730578 1.033779028 0.97890084 1.078658108 0.992855183 1 12.10161545 -6.000950518 8.167438034 0.953355855 1.027232392 0.183776981 0.057289435 0.125685385 81.87289955 0.008969337 0.015784094 9.98E-07 6.000950518 0.073876537 NRNEQESAVHPR ddPTM_HeLa_CUDC101_4h_R1 2 NRNEQESAVHPR 12 1 B4DDD6;Q9UJU6-4;Q9UJU6-2;Q9UJU6-6;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 0 0 ; ; 146.07 0.00052838 1155050 627.35 108.13 749.19 698 875.86 429.85 679.34 403.06 1024.41 853.67 FALSE FALSE TRUE 553.812984 111.4613571 789.6934776 726.467457 811.2495528 421.6513274 705.5423714 448.9427212 982.1833862 848.5923329 0.652625486 0.131348532 0.930592284 0.856085341 0.955994441 0.496883263 0.831426757 0.529044046 1.157426656 1 9.728927834 -9.124667434 1.044199696 0.988221248 0.682026399 0.290842606 0.242078006 0.621603143 1.283314506 0.127572846 0.043256869 7.50E-10 9.124667434 -0.30619485 FGDES(ph)PLLTMR ddPTM_HeLa_CUDC101_4h_R1 2 FGDESPLLTMR 11 0 H0YJ41;Q9P203-5;Q9P203 H0YJ41 BTBD7 BTB/POZ domain-containing protein 7 1 0 FGDES(1)PLLTMR;FGDES(1)PLLTMR ; 150.14 0.00066415 10416000 2862.2 2085.3 2654.1 2317.3 2542.6 2399.3 2132.6 2247.55 2705.9 2446.5 TRUE FALSE FALSE 2526.697255 2149.545621 2797.588674 2411.80951 2355.037464 2353.53735 2214.855096 2503.402007 2594.361657 2431.948109 1.038960184 0.883878078 1.150348835 0.991719149 0.968374882 0.967758046 0.910732876 1.029381341 1.066783311 1 11.24789673 -6.00090069 24.60195883 1.01804152 0.966707878 0.13758045 0.067608394 44.32164667 1210711.767 0.009033092 0.016234203 9.98E-07 6.00090069 -0.051333642 TQS(ph)PGGCSAEAVLAR ddPTM_HeLa_CUDC101_4h_R1 4 TQSPGGCSAEAVLAR 15 0 K7ESM2;K7ELS4;K7EJA3;K7ERG7;Q96MH2 K7ESM2 HEXIM2 Protein HEXIM2 1 0 T(0.233)QS(0.767)PGGCSAEAVLAR;T(0.213)QS(0.774)PGGCS(0.013)AEAVLAR;T(0.035)QS(0.936)PGGCS(0.029)AEAVLAR;T(0.01)QS(0.889)PGGCS(0.102)AEAVLAR ;;; 142.57 0.00038206 214800000 7118.84 5914.47 6140.4 5650.68 6172.65 5622.12 5650.14 5422.07 7235.65 5625.71 TRUE FALSE FALSE 6284.380367 6096.68781 6472.368598 5881.139155 5717.305907 5514.887428 5868.067792 6039.296532 6937.393444 5592.248027 1.123766388 1.0902034 1.157382249 1.051659212 1.022362721 0.986166458 1.049321805 1.079940751 1.24053751 1 12.44921263 -6.000405166 24.76191197 1.071082536 1.032680327 0.090911485 0.070097811 28.0698401 1715727.402 0.008896753 0.01599569 9.99E-07 6.000405166 -0.03840221 NRPEDYQGGR ddPTM_HeLa_CUDC101_4h_R1 2 NRPEDYQGGR 10 1 Q15084-3;Q15084;Q15084-4;Q15084-5;Q15084-2 Q15084-3 PDIA6 Protein disulfide-isomerase A6 0 0 ; ; 182.16 5.45E-11 38907000 3755.3 2529.3 4265.7 4705.6 3746.8 2959 3739 2412.2 3963.7 4684.1 FALSE FALSE TRUE 3315.109427 2607.224735 4496.316645 4897.514707 3470.406029 2902.562005 3883.214482 2686.795098 3800.314608 4656.238765 0.711971528 0.559942234 0.965654227 1.051817777 0.745323899 0.623370525 0.833980962 0.577031212 0.816176919 1 12.18494932 -9.313964528 1.020591875 1.001105037 0.763657847 0.079070327 0.160647056 0.627905636 1.163536264 0.108035371 0.02824361 4.85E-10 9.313964528 -0.23744719 LDPSPPS(ph)PQPK ddPTM_HeLa_CUDC101_4h_R1 1 LDPSPPSPQPK 11 0 A0A3B3IU55 A0A3B3IU55 1 0 LDPS(0.22)PPS(0.78)PQPK 97.463 0.016271 27880000 2717.4 2742.2 3034.6 2585.4 2568.3 2587.1 2385.3 2483.1 2914.6 3222.4 TRUE FALSE FALSE 2398.870491 2826.683932 3198.659655 2690.843787 2378.841626 2537.755378 2477.30182 2765.766067 2794.458954 3203.233021 0.74889041 0.882447175 0.998572265 0.840039975 0.742637707 0.792248132 0.773375463 0.863429556 0.872387034 1 11.64531304 -5.999746744 24.99653313 0.887916198 0.791460851 0.323830268 0.072317131 12.84812153 1267802.52 0.015118661 0.027214302 1.00E-06 5.999746744 -0.096455347 VPDEEENEES(ph)DNEKETEK ddPTM_HeLa_CUDC101_4h_R1 2 VPDEEENEESDNEKETEK 18 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 VPDEEENEES(1)DNEKETEK;VPDEEENEES(1)DNEKETEK ; 108.28 0.00032394 852170000 8731.7 6095.6 7266.4 6463.6 5059.6 5388.1 5366.7 3839.2 5819.8 7861.8 TRUE FALSE FALSE 7708.183362 6283.398211 7659.243564 6727.213546 4686.363388 5285.33097 5573.695417 4276.239009 5579.905381 7815.037664 0.986327091 0.80401381 0.980064831 0.860803727 0.599659732 0.676302687 0.713201351 0.547180857 0.713995968 1 12.93203711 -5.999636982 0.771446392 0.993607865 0.604153762 0.442865196 0.116530782 0.210805184 0.237708826 0.014099861 0.042507116 1.00E-06 5.999636982 -0.389454103 NRPLSDEELDAMFPEGYK ddPTM_HeLa_CUDC101_4h_R1 1 NRPLSDEELDAMFPEGYK 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 0 0 142.4 0.00011085 6932400 1655.4 1047.3 1109.5 1173.8 1474.4 1335.2 1333 1410.6 1086.7 1441.7 FALSE FALSE TRUE 1461.356521 1079.566072 1169.482926 1221.672638 1365.636449 1309.733285 1384.414257 1571.177002 1041.905766 1433.124704 1.019699484 0.753295277 0.816037099 0.852453826 0.952908317 0.913900431 0.966011019 1.096329578 0.727016821 1 10.48494844 GGGTPDANS(ph)LAPPGK ddPTM_HeLa_CUDC101_4h_R1 1 GGGTPDANSLAPPGK 15 0 Q9BRQ0;Q5T171 Q9BRQ0 PYGO2 Pygopus homolog 2 1 0 GGGT(0.225)PDANS(0.775)LAPPGK 113.44 0.0018978 247900000 11770 10471 10890 10040 10178 9414.1 9780.8 9939.1 11260 11498 TRUE FALSE FALSE 10390.33844 10793.5991 11478.74634 10449.4746 9427.189217 9234.541727 10158.04873 11070.52697 10795.85803 11429.60938 0.909072051 0.944354154 1.004299093 0.914245994 0.824804147 0.807949022 0.888748547 0.968583142 0.944551793 1 13.48048848 -5.999369959 19.72974185 0.958090362 0.86912496 0.430969837 0.047592311 1.244272561 38881.93916 0.008047374 0.014429072 1.00E-06 5.999369959 -0.088965402 NRPTSISWDGLDSGK ddPTM_HeLa_CUDC101_4h_R1 2 NRPTSISWDGLDSGK 15 1 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 0 ; ; 113.52 0.0023432 45761000 6262.2 5705.9 4817.4 5432.2 5382.1 6064.6 5340.3 4975 5135.7 7016.8 FALSE FALSE TRUE 5528.154409 5881.692016 5077.843216 5653.748596 4985.073206 5948.927859 5546.27716 5541.33389 4924.004272 6975.063762 0.792559695 0.843245627 0.727999541 0.810565866 0.714699303 0.852885086 0.795157915 0.794449209 0.70594398 1 12.76799069 -9.171646629 0.604178935 1.026340862 0.786387692 0 0.100035103 0.348043138 0.193919415 0.045570556 0.008898714 6.74E-10 9.171646629 -0.239953169 IGELGAPEVWGLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 IGELGAPEVWGLSPK 15 0 A0A494C050;Q8N5F7 A0A494C050;Q8N5F7 NKAP NF-kappa-B-activating protein 1 0 IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK ; 137.27 0.00050841 1001610000 16670.3 14690.1 14865.7 14331.7 14704.5 14464.2 14093.1 14447.7 16619.6 15814 TRUE FALSE FALSE 14716.2327 15142.68457 15669.38471 14916.20867 13619.77833 14188.31948 14636.67559 16092.36777 15934.53305 15719.93762 0.936150833 0.963278922 0.996784153 0.948872001 0.86640155 0.902568434 0.931089928 1.023691579 1.013651163 1 13.94030787 -5.999173206 24.99969516 0.97043129 0.926261651 0.218801434 0.042806014 38.54347006 1165347.225 0.006509152 0.011724662 1.00E-06 5.999173206 -0.04416964 STPS(ph)PTPVESSDPK ddPTM_HeLa_CUDC101_4h_R1 1 STPSPTPVESSDPK 14 0 Q9NW07 Q9NW07 ZNF358 Zinc finger protein 358 1 0 S(0.001)T(0.001)PS(0.877)PT(0.121)PVESSDPK 165.78 1.54E-05 35343000 5661.2 5487.2 5772.4 4997.5 5227.4 4783.8 4836.3 4306.8 5709.9 6218.6 TRUE FALSE FALSE 4997.602718 5656.254128 6084.473405 5201.319651 4841.785116 4692.556985 5022.837711 4797.068703 5474.535505 6181.611491 0.808462765 0.915012879 0.984285961 0.841418077 0.783256134 0.759115482 0.812545033 0.776022354 0.885616237 1 12.59376727 -5.998727979 4.510412712 0.913063791 0.784880366 0.612065145 0.050976323 0.156629751 8.152277238 0.0112766 0.020136245 1.00E-06 5.998727979 -0.128183425 RPGFS(ph)PTSHR ddPTM_HeLa_CUDC101_4h_R1 2 RPGFSPTSHR 10 1 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 RPGFS(0.843)PT(0.125)S(0.031)HR;RPGFS(0.958)PT(0.021)S(0.021)HR ; 79.089 0.024514 80604000 2794 2251.79 2231.08 2457.43 3001.3 2539.82 2664.3 2245.33 2836.6 2573.86 TRUE FALSE FALSE 2466.491555 2321.164981 2351.698933 2557.654617 2779.900078 2491.377165 2767.062943 2500.929291 2719.674147 2558.550566 0.964019077 0.907218724 0.919152806 0.999649822 1.086513636 0.973745525 1.081496289 0.977478938 1.062974554 1 11.32111103 -5.998436656 24.94657635 0.970814767 1.031194281 0.217943812 0.052802482 51.31583185 818821.3839 0.006647957 0.011988103 1.00E-06 5.998436656 0.060379514 GVFPEAATKPLLS(ph)MGWCGK ddPTM_HeLa_CUDC101_4h_R1 1 GVFPEAATKPLLSMGWCGK 19 1 J3QL04 J3QL04 ASPSCR1 1 0 GVFPEAATKPLLS(1)MGWCGK 50.079 0.039107 46003000 1340.4 1135.8 1338.8 920.65 731.29 816.61 660.68 533.85 1108.3 1333 TRUE FALSE FALSE 1183.280344 1170.792652 1411.179578 958.1980864 677.3441936 801.0345248 686.1626489 594.6213261 1062.615405 1325.071257 0.892993745 0.883569578 1.064983917 0.723129478 0.511175675 0.604521848 0.517830755 0.448746679 0.801930764 1 10.37185423 -5.998134611 3.451999167 0.949733717 0.527935874 0.859274646 0.077428332 0.05154709 1.305234244 0.010173133 0.018513751 1.00E-06 5.998134611 -0.421797844 AATAARPPAPPPAPQPPS(ph)PTPSPPRPTLAR ddPTM_HeLa_CUDC101_4h_R1 1 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36-3;Q96B36;H9KV91 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 1 0 AATAARPPAPPPAPQPPS(0.407)PT(0.407)PS(0.093)PPRPT(0.093)LAR 85.798 2.29E-07 112990000 329.9 444.6 472.44 330.15 314.77 264.29 342.44 337.77 452.31 392.85 TRUE FALSE FALSE 291.2296221 458.297599 497.9815355 343.614944 291.5500442 259.2491086 355.6480255 376.2203715 433.6655904 390.5133107 0.745761064 1.173577408 1.275197341 0.879905843 0.746581579 0.663867534 0.910719342 0.963399611 1.110501431 1 8.609227914 -5.997996976 24.95435377 0.936928342 0.815923634 0.156857143 0.173131177 138.7967909 1729121.464 0.028900543 0.052131849 1.00E-06 5.997996976 -0.121004708 TVTDVSTIDGNAAELVSGRPVSDT(ph)TEPSSPEGK ddPTM_HeLa_CUDC101_4h_R1 1 TVTDVSTIDGNAAELVSGRPVSDTTEPSSPEGK 33 1 C9JA33;B1ALY0;Q8IXS6;Q8IXS6-2 C9JA33 PALM2;PALM2-AKAP2 Paralemmin-2 1 0 TVTDVSTIDGNAAELVS(0.139)GRPVS(0.139)DT(0.334)T(0.334)EPS(0.048)S(0.006)PEGK 73.616 5.35E-06 33109000 1969.9 1561.5 1838.6 1558.3 1384 1283.7 1258 1495.3 1761.3 2031.6 TRUE FALSE FALSE 1738.991308 1609.607964 1938.000277 1621.85421 1281.905077 1259.215561 1306.521481 1665.518908 1688.698469 2019.515953 0.861093128 0.797026615 0.959636033 0.803090566 0.634758579 0.623523453 0.646947839 0.824711934 0.836189715 1 10.97979383 -5.997596413 3.612738769 0.921558379 0.676678541 0.594232556 0.07879536 0.109493293 3.095543406 0.012906554 0.023404028 1.01E-06 5.997596413 -0.244879838 IPEPES(ph)PAKPNVPTASTAPPADSR ddPTM_HeLa_CUDC101_4h_R1 2 IPEPESPAKPNVPTASTAPPADSR 24 1 K7EL81;Q9BZL4-5;Q9BZL4-2;Q9BZL4-3;Q9BZL4-4;Q9BZL4;K7ER83 K7EL81 PPP1R12C Protein phosphatase 1 regulatory subunit 12C 1 0 IPEPES(1)PAKPNVPTASTAPPADSR;IPEPES(1)PAKPNVPTASTAPPADSR ; 86.707 3.28E-05 49198000 2569.5 1975.9 2326.78 2031.38 1823.25 1832.03 1748.07 2157.4 2437.86 2395.39 TRUE FALSE FALSE 2268.307105 2036.775137 2452.572765 2114.228457 1688.75248 1797.08708 1815.493645 2402.989695 2337.370379 2381.142114 0.952613073 0.855377394 1.029998483 0.887905197 0.709219525 0.754716432 0.762446573 1.009175253 0.981617336 1 11.21743801 -5.997120076 8.863656799 0.969093442 0.80115765 0.41965509 0.085677408 0.074309062 71.27631129 0.012314794 0.02180928 1.01E-06 5.997120076 -0.167935792 S(ph)IHVDSLEPQR ddPTM_HeLa_CUDC101_4h_R1 2 SIHVDSLEPQR 11 0 E7EVA0 E7EVA0 MAP4 Microtubule-associated protein 1 0 S(1)IHVDSLEPQR;S(1)IHVDSLEPQR ; 127.78 0.001642 9742000 2659.7 2303.87 2140.75 2446.85 3459.6 2938.7 2674.07 2079.64 2729.24 2315.55 TRUE FALSE FALSE 2347.933998 2374.849504 2256.48542 2546.643119 3204.3922 2882.649194 2777.209776 2316.377811 2616.739572 2301.777006 1.020052764 1.031746124 0.980323209 1.106381336 1.392138419 1.252358151 1.206550317 1.006343276 1.136834526 1 11.16853236 -5.996831006 24.99973575 1.011208874 1.220599939 0.426365862 0.096901344 53.76925749 424168.8889 0.012735219 0.022999262 1.01E-06 5.996831006 0.209391066 SPGS(ph)PVGEGTGSPPK ddPTM_HeLa_CUDC101_4h_R1 2 SPGSPVGEGTGSPPK 15 0 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;P35611-5;A0A0A0MSR2 E7EV99 ADD1 Alpha-adducin 1 0 SPGS(1)PVGEGTGSPPK;S(0.01)PGS(0.99)PVGEGTGSPPK ; 234.63 3.14E-43 375592200 7960.1 6509.7 7527.8 6722.4 6750.5 6632.6 6395.5 6755.3 7088.3 7465 TRUE FALSE FALSE 7027.029145 6710.256141 7934.775638 6996.568529 6252.529064 6506.094206 6642.176577 7524.296046 6796.117274 7420.597848 0.946962669 0.904274329 1.069290615 0.942857796 0.842591014 0.87676146 0.895099925 1.013974372 0.915844978 1 12.85731971 -5.996488343 24.96759086 0.97570534 0.902661899 0.176269051 0.059655026 107.4128427 763681.7738 0.008293527 0.014982449 1.01E-06 5.996488343 -0.073043441 RVVLGDGVQLPPGDYST(ph)TPGGTLFS(ph)TTPGGTR ddPTM_HeLa_CUDC101_4h_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 RVVLGDGVQLPPGDY(0.068)S(0.079)T(0.659)T(0.199)PGGT(0.195)LFS(0.493)T(0.142)T(0.161)PGGT(0.006)R 84.549 9.94E-08 86269000 1043.4 1220.6 1002.1 1104.4 1477.9 1161.8 938.7 1228.9 1112.1 1275.3 TRUE FALSE FALSE 921.0942337 1258.205239 1056.276557 1149.442206 1368.878261 1139.640601 974.9059734 1368.793009 1066.258767 1267.714459 0.726578629 0.992498926 0.833213307 0.906704343 1.079800149 0.89897263 0.769026469 1.0797329 0.841087486 1 10.30801411 -5.995781503 24.9931438 0.8758254 0.94606874 0.095962165 0.111194137 306.4559787 1815617.811 0.019350321 0.034978943 1.01E-06 5.995781503 0.07024334 ASLGSLEGEAEAEAS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 3 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ASLGSLEGEAEAEAS(0.912)S(0.088)PK;ASLGSLEGEAEAEAS(0.5)S(0.5)PK;ASLGSLEGEAEAEAS(0.5)S(0.5)PK ;; 382.37 0 2692680000 26597 23349.7 22696.9 21647 20865.2 21973.3 21346.3 20372.2 22646 23219.6 TRUE FALSE FALSE 23479.33998 24069.07658 23923.96307 22529.85823 19326.01577 21554.19591 22169.63394 22691.2889 21712.52229 23081.48879 1.017236808 1.042787006 1.036499997 0.976100737 0.837295027 0.9338304 0.960494106 0.983094683 0.940689853 1 14.49444866 -5.995538427 24.99971883 1.013119814 0.928241428 0.415111471 0.043833267 77.06351377 431806.5851 0.005624854 0.010166593 1.01E-06 5.995538427 -0.084878385 NEKPTQSVS(ph)SPEATSGSTGSVEK ddPTM_HeLa_CUDC101_4h_R1 1 NEKPTQSVSSPEATSGSTGSVEK 23 1 H0YE68;Q9BZ95-3;Q9BZ95-4;Q9BZ95-2;Q9BZ95-5;Q9BZ95 H0YE68 WHSC1L1 Histone-lysine N-methyltransferase NSD3 1 0 NEKPTQSVS(0.53)S(0.47)PEATSGSTGSVEK 109.69 5.21E-06 20237000 6956.1 5817.6 5852.3 5470.8 5357.4 5592.3 4379.9 3057.3 6491.5 8174.7 TRUE FALSE FALSE 6140.716503 5996.83336 6168.69304 5693.922871 4962.195275 5485.636195 4548.83421 3405.330674 6223.917622 8126.076521 0.755680369 0.73797402 0.759123179 0.700697668 0.610650818 0.675065781 0.55978235 0.419062098 0.76591915 1 12.98834323 -5.995459826 0.098119617 1.336009248 4.58E-16 0.670483125 0.083096495 5.035407729 0.17530471 0.844084127 1.527760436 1.01E-06 5.995459826 -1.336009248 ASS(ph)PIKQSHEPVPDTSVEK ddPTM_HeLa_CUDC101_4h_R1 1 ASSPIKQSHEPVPDTSVEK 19 1 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 AS(0.161)S(0.838)PIKQS(0.002)HEPVPDTSVEK 74.579 0.0058982 9721300 1934.8 2027.2 1809.7 1964.6 2541 2114.2 1811.7 2164.4 2041.2 2188.1 TRUE FALSE FALSE 1708.005677 2089.655629 1907.537856 2044.72488 2353.555492 2073.875157 1881.577876 2410.786547 1957.060872 2175.085084 0.785259248 0.960723626 0.876994592 0.940066618 1.08205215 0.953468521 0.865059436 1.10836425 0.899762904 1 11.08685612 -5.995323839 24.8821275 0.900556648 0.991717492 0.237384323 0.081627446 181.899618 967884.0703 0.014591935 0.026380968 1.01E-06 5.995323839 0.091160844 T(ph)TSPLEEEEREIK ddPTM_HeLa_CUDC101_4h_R1 2 TTSPLEEEEREIK 13 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 T(0.847)T(0.149)S(0.004)PLEEEEREIK;T(0.639)T(0.296)S(0.065)PLEEEEREIK ; 153.49 0.0033044 57732000 7038.3 8382.1 7387.3 7811.6 10357.7 8180.5 8473.5 7558.9 8236.4 8947.7 TRUE FALSE FALSE 6213.281143 8640.342566 7786.679783 8130.190813 9593.633106 8024.470592 8800.325733 8419.374622 7896.892106 8894.478682 0.698554841 0.971427655 0.875450947 0.914071651 1.078605442 0.902185601 0.98941445 0.946584384 0.887842041 1 13.11869433 -5.994834637 24.37564338 0.866860281 0.977165433 0.187791407 0.086312551 152.8568305 721326.8363 0.017741361 0.032073463 1.01E-06 5.994834637 0.110305152 NSTPS(ph)EPGSGR ddPTM_HeLa_CUDC101_4h_R1 1 NSTPSEPGSGR 11 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 NST(0.22)PS(0.741)EPGS(0.039)GR 129.76 0.0021311 171030000 7692.1 6163.6 6596.4 6138.8 5590.5 5432 5533.3 5746.7 5916.8 7263.2 TRUE FALSE FALSE 6790.443698 6353.49321 6953.021337 6389.166798 5178.099953 5328.39365 5746.721235 6400.881099 5672.907 7219.998163 0.940504907 0.879985433 0.963022591 0.884926374 0.717188542 0.738004848 0.795944972 0.886548854 0.785721391 1 12.81778275 -5.994150551 3.986286253 0.961529866 0.78216422 0.31379782 0.075610066 0.092100276 3.353207199 0.008482473 0.015300328 1.01E-06 5.994150551 -0.179365645 SSSLEMTPYNTPQLS(ph)PATTPANKK ddPTM_HeLa_CUDC101_4h_R1 4 SSSLEMTPYNTPQLSPATTPANKK 24 1 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7;B4DGD8;A0A0A0MQV8;B0QZ65 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 SSSLEMT(0.01)PY(0.026)NT(0.245)PQLS(0.709)PAT(0.008)T(0.001)PANKK;SSSLEMTPY(0.001)NT(0.008)PQLS(0.99)PATTPANKK;SSSLEMTPYNTPQLS(1)PATTPANKK;SSSLEMTPYNTPQLS(0.995)PAT(0.004)TPANKK ;;; 142.65 8.26E-09 276331000 15184.8 11693.2 12077.5 12613.7 15139.7 12776.3 12626.8 12953.7 12372 12716.4 TRUE FALSE FALSE 13404.86076 12053.45363 12730.44618 13128.14121 14022.87449 12532.61336 13113.81991 14428.29685 11862.02092 12640.76229 1.060447183 0.95353851 1.007094817 1.038556134 1.109337726 0.99144443 1.037423188 1.141410345 0.93839443 1 13.62579585 -5.993829282 24.92135103 1.021068232 1.063475536 0.250447528 0.052563704 235.3757418 950588.7088 0.007020732 0.012703327 1.01E-06 5.993829282 0.042407304 YMLTHQELAS(ph)DGEIETK ddPTM_HeLa_CUDC101_4h_R1 10 YMLTHQELASDGEIETK 17 0 Q02241;A0A2U3TZL8;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 YMLT(0.003)HQELAS(0.997)DGEIETK;YMLTHQELAS(1)DGEIETK;YMLT(0.003)HQELAS(0.997)DGEIETK;YMLTHQELAS(1)DGEIETK;YMLTHQELAS(0.999)DGEIET(0.001)K;YMLTHQELAS(1)DGEIETK;YMLTHQELAS(0.998)DGEIET(0.002)K;YMLTHQELAS(1)DGEIETK;YMLTHQELAS(0.999)DGEIET(0.001)K;YMLTHQELAS(0.999)DGEIET(0.001)K ;;;;;;;;; 210.57 9.38E-24 258843000 31855.8 27544.8 26812.4 25615.2 26186 26411.8 24646 21951.39 26047.6 30507.3 TRUE FALSE FALSE 28121.71141 28393.42264 28261.95945 26659.89857 24254.31095 25908.03892 25596.60448 24450.24751 24973.9069 30325.84122 0.927318428 0.936278154 0.931943132 0.87911489 0.799790211 0.854322184 0.844052578 0.806251254 0.823519015 1 14.88826005 -5.993605506 0.234200794 1.01425528 0.741590652 0.127151004 0.058731414 1.214957954 0.12735323 0.032637756 0.104595545 1.01E-06 5.993605506 -0.272664628 AQLGGPEAAKS(ph)DETAAK ddPTM_HeLa_CUDC101_4h_R1 6 AQLGGPEAAKSDETAAK 17 1 P04792;C9J3N8 P04792 HSPB1 Heat shock protein beta-1 1 0 AQLGGPEAAKS(0.964)DET(0.036)AAK;AQLGGPEAAKS(0.95)DET(0.05)AAK;AQLGGPEAAKS(0.514)DET(0.486)AAK;AQLGGPEAAKS(1)DETAAK;AQLGGPEAAKS(0.713)DET(0.287)AAK;AQLGGPEAAKS(0.985)DET(0.015)AAK ;;;;; 193.22 6.13E-24 209822000 8570.4 7804.62 7814.95 7525.98 7787.71 7387.91 6577.08 8443.56 7852.74 8437.51 TRUE FALSE FALSE 7565.790704 8045.071091 8237.449836 7832.921994 7213.226149 7246.997926 6830.760179 9404.74074 7529.046733 8387.323315 0.90205068 0.959194106 0.982130952 0.933900089 0.860015273 0.864041799 0.814414793 1.121304186 0.897669787 1 13.03399475 -5.99334743 23.98788408 0.955132884 0.903231248 0.024075987 0.082295673 210.7585073 759940.1667 0.011698662 0.02116358 1.02E-06 5.99334743 -0.051901636 FY(ph)T(ph)HVLMS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 FYTHVLMSK 9 0 A0A140T8W2;Q9H4I0-2;Q9H4I0 A0A140T8W2 RAD21L1 Double-strand-break repair protein rad21-like protein 1 3 0 FY(1)T(1)HVLMS(1)K 68.515 0.024933 9914900 184.5 207.72 178.87 116.66 0 135.28 152.29 0 128.89 116.24 TRUE FALSE FALSE 162.8731897 214.119607 188.5402533 121.417899 0 132.6997594 158.1638763 0 123.5770996 115.5485993 1.409564379 1.853069689 1.631696571 1.050795075 0 1.148432436 1.368808253 0 1.069481589 1 6.852355961 -5.993134388 24.99029043 1.290478695 0.69498484 0.357167692 0.469680511 186.0401179 677164.2288 0.070733476 0.128005831 1.02E-06 5.993134388 -0.595493855 GSLLTILGSPS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 GSLLTILGSPSPER 14 0 Q96A19 Q96A19 CCDC102A Coiled-coil domain-containing protein 102A 1 0 GSLLTILGS(0.163)PS(0.837)PER;GSLLTILGS(0.155)PS(0.845)PER ; 118.16 0.0015985 21469000 2668.6 2825.8 2760.2 2610.1 2777.8 2634.3 2335.7 2796.7 3225.5 3108.4 TRUE FALSE FALSE 2355.790753 2912.859549 2909.424761 2716.55116 2572.887228 2584.055117 2425.788731 3115.065023 3092.543525 3089.911099 0.762413765 0.942700115 0.941588502 0.879168064 0.832673545 0.836287852 0.785067484 1.008140663 1.000851942 1 11.59334961 -5.993113324 22.48129511 0.894342831 0.857481578 0.040243844 0.085726344 186.1783324 607746.3031 0.01507588 0.02726003 1.02E-06 5.993113324 -0.036861253 KYTLENKEEGSLSDTEADAVS(ph)GQLPDPTTNPSAGK ddPTM_HeLa_CUDC101_4h_R1 1 KYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGK 35 2 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 0 KY(0.013)T(0.013)LENKEEGS(0.044)LS(0.194)DT(0.194)EADAVS(0.54)GQLPDPT(0.001)T(0.001)NPSAGK 47.319 0.0085645 132870000 3859.5 3063 3391.9 3243.7 3547.8 3162.7 3382.5 3167.8 2837 3415.2 TRUE FALSE FALSE 3407.095261 3157.367399 3575.276374 3375.992106 3286.085862 3102.376767 3512.964158 3528.409547 2720.057659 3394.886239 1.003596298 0.930036289 1.053135841 0.994434532 0.967951687 0.913838211 1.034781112 1.039330717 0.801222035 1 11.72914752 -5.992525117 24.85349276 0.999822965 0.98616942 0 0.076106473 716.0997195 2380963.664 0.006244197 0.011300696 1.02E-06 5.992525117 -0.013653545 RFS(ph)DVTGNKIDKNVQY(ph)PECLDMK ddPTM_HeLa_CUDC101_4h_R1 1 RFSDVTGNKIDKNVQYPECLDMK 23 3 A0A087WUW7;C9J2P7 A0A087WUW7 USP17L15 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 17-like protein 15 2 0 RFS(0.926)DVT(0.074)GNKIDKNVQY(1)PECLDMK 47.807 0.02132 4219300 665.43 582.11 630.34 557.47 451.03 496.39 597.98 572.94 669.36 622.26 TRUE FALSE FALSE 587.4293041 600.0441191 664.4180871 580.2060362 417.7584155 486.9221878 621.0442889 638.1611737 641.7686975 618.5587698 0.949674199 0.970068081 1.074138982 0.937996621 0.675373846 0.787188237 1.004018242 1.031690447 1.037522591 1 9.272766863 -5.992428463 24.9997295 0.982803495 0.86871184 0.25989846 0.100889711 224.0955865 739912.3166 0.015324494 0.027738968 1.02E-06 5.992428463 -0.114091656 PVPDS(ph)PVSVTR ddPTM_HeLa_CUDC101_4h_R1 1 PVPDSPVSVTR 11 0 G3XAC1;A0A0C4DFT5;Q9BXS9-5;Q9BXS9-7;Q9BXS9-4;Q9BXS9-2;Q9BXS9-3;Q9BXS9 G3XAC1 SLC26A6 Solute carrier family 26 member 6 1 0 PVPDS(0.998)PVS(0.002)VTR 94.547 0.019095 10868000 1977.9 1786.8 1925.2 1548.1 1400.4 1346.4 1170.3 1269.8 1756.6 2128.5 TRUE FALSE FALSE 1746.05356 1841.84919 2029.282135 1611.238209 1297.095282 1320.719663 1215.438863 1414.348899 1684.192205 2115.839587 0.825229649 0.870505118 0.95909073 0.76151246 0.613040464 0.624205952 0.574447548 0.668457528 0.795992387 1 11.04701454 -5.991350542 2.9053145 0.913824651 0.616564513 0.803511937 0.062214724 0.086538746 1.489755819 0.010877112 0.020207551 1.02E-06 5.991350542 -0.297260138 QPGYQPPNPHPGPS(ph)SPPAAPASK ddPTM_HeLa_CUDC101_4h_R1 1 QPGYQPPNPHPGPSSPPAAPASK 23 0 Q9BUL9 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 1 0 QPGYQPPNPHPGPS(0.5)S(0.5)PPAAPASK 76.78 0.00069833 62644000 2521.6 2398.8 2327.7 1965.5 2284.1 1808 1684.6 1953.1 2322 2559.2 TRUE FALSE FALSE 2226.02187 2472.704185 2453.542503 2045.661586 2115.606494 1773.515412 1749.575586 2175.433009 2226.286177 2543.977765 0.875016245 0.971983411 0.964451237 0.804119287 0.831613595 0.697142655 0.687732263 0.855130512 0.87512014 1 11.31287035 -5.990564858 1.764728182 0.944200035 0.74914691 0.627431965 0.062101306 0.167987272 1.043985269 0.010410802 0.021140383 1.02E-06 5.990564858 -0.195053125 TDALTSS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 3 TDALTSSPGR 10 0 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 TDALTS(0.003)S(0.997)PGR;TDALTS(0.027)S(0.973)PGR;TDALT(0.001)S(0.004)S(0.995)PGR ;; 131.42 0.0021282 356943000 20424.1 15469.6 15392.3 15560.9 13962.2 15087.7 13461.2 10928 17094.5 16893.3 TRUE FALSE FALSE 18030.01796 15946.20004 16224.4543 16195.54076 12932.23632 14799.92726 13980.40299 12171.99935 16389.85747 16792.8179 1.073674357 0.949584527 0.966154364 0.964432584 0.770105196 0.881324823 0.832522753 0.724833641 0.976004002 1 14.03555672 -5.989812542 0.874060903 1.033014216 0.787667229 0.720788649 0.05477642 0.208989224 0.308206393 0.009789039 0.027477484 1.02E-06 5.989812542 -0.245346987 ELFQT(ph)PGHTEELVAAGK ddPTM_HeLa_CUDC101_4h_R1 3 ELFQTPGHTEELVAAGK 17 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(0.782)PGHT(0.218)EELVAAGK;ELFQT(0.981)PGHT(0.019)EELVAAGK;ELFQT(0.999)PGHT(0.001)EELVAAGK ;; 123.92 0.00076295 37379200 11289.4 10055.9 9428.4 9679.3 9329.5 9830.6 7458.7 2829.3 8695.1 11081.5 TRUE FALSE FALSE 9966.073646 10365.71036 9938.127823 10074.06369 8641.281372 9643.097684 7746.384557 3151.376076 8336.684298 11015.58675 0.904724721 0.941003925 0.902187787 0.914528107 0.784459473 0.875404816 0.703220331 0.286083361 0.756808011 1 13.42725872 -4.223443148 1.205010636 0.938626732 1.20E-31 0.835763492 0.078500415 0.340349956 0.382421971 0.009216334 0.406651607 5.98E-05 4.223443148 -0.938626732 down TTYDS(ph)AEEENKENLYAGK ddPTM_HeLa_CUDC101_4h_R1 1 TTYDSAEEENKENLYAGK 18 1 E7ESG2;Q9HAW4-2;Q9HAW4-3;Q9HAW4 E7ESG2 CLSPN Claspin 1 0 T(0.006)T(0.002)Y(0.001)DS(0.991)AEEENKENLYAGK 111.45 0.00023867 108920000 5948.3 4987.4 4776.7 4191.6 4785.7 3978.8 4090.1 2745.8 5636.7 6407.4 TRUE FALSE FALSE 5251.049291 5141.055882 5034.942851 4362.551566 4432.668445 3902.911019 4247.856527 3058.370773 5404.35284 6369.2885 0.824432633 0.807163293 0.790503186 0.684935463 0.695944052 0.612770331 0.666927951 0.480174634 0.848501813 1 12.63691651 -4.223377456 0.129522191 1.13976594 8.88E-17 0.823732061 0.057498422 4.699160602 0.100880544 0.171402194 0.971913738 5.98E-05 4.223377456 -1.13976594 down SKT(ph)FDWAEFRPIQQALAQER ddPTM_HeLa_CUDC101_4h_R1 1 SKTFDWAEFRPIQQALAQER 20 2 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;H0Y2S9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.059)KT(0.941)FDWAEFRPIQQALAQER 109.77 0.00043147 146780000 1069.5 687.82 1008.4 815.99 739.95 910.62 786.53 787.31 914.14 792.65 TRUE FALSE FALSE 944.1348313 709.0109189 1062.917154 849.2695992 685.3653627 893.2514407 816.8667256 876.934188 876.4587623 787.9352825 1.198239059 0.899833952 1.348990428 1.07784182 0.869824436 1.133660924 1.036718045 1.11295205 1.112348668 1 9.621933328 -5.989678038 24.9730176 1.100900929 1.036094498 0.064765521 0.128388279 576.2453607 1394161.473 0.019420181 0.035176441 1.02E-06 5.989678038 -0.064806431 SPS(ph)PAHLPDDPKVAEK ddPTM_HeLa_CUDC101_4h_R1 4 SPSPAHLPDDPKVAEK 16 1 Q92615;H0Y4V9;A0A087X183;H0Y641 Q92615 LARP4B La-related protein 4B 1 0 S(0.045)PS(0.955)PAHLPDDPKVAEK;S(0.116)PS(0.884)PAHLPDDPKVAEK;S(0.011)PS(0.989)PAHLPDDPKVAEK;S(0.039)PS(0.961)PAHLPDDPKVAEK ;;; 123.58 0.00029748 161617000 12198 13022.8 12768.8 12934.2 24904.8 16964.3 17449.4 22144.8 15400.6 11175.1 TRUE FALSE FALSE 10768.16893 13424.01703 13459.11995 13461.71258 23067.62252 16640.73424 18122.4292 24665.67452 14765.78075 11108.63001 0.969351659 1.208431375 1.211591343 1.211824732 2.076549719 1.498000584 1.631382915 2.220406522 1.329217081 1 13.43939328 -5.989634104 0.803951108 0.980377537 1.905538663 0.618094315 0.250209645 0.241773023 0.297763909 0.039642509 0.117444647 1.02E-06 5.989634104 0.925161127 VPDS(ph)PENELK ddPTM_HeLa_CUDC101_4h_R1 2 VPDSPENELK 10 0 A0A2R8Y549;Q8NI35-4;Q8NI35-3;Q8NI35-2;Q8NI35;A0A0U1RR46;A0A0X1KG69;A0A087WUZ6 A0A2R8Y549 INADL InaD-like protein 1 0 VPDS(1)PENELK;VPDS(1)PENELK ; 147.96 0.00062443 23892000 8511.9 7555.5 7004 7027.6 6946.5 6678.5 6930.2 7446.9 7506.8 7393.6 TRUE FALSE FALSE 7514.147985 7788.276 7382.657426 7314.215904 6434.070534 6551.11874 7197.500135 8294.624995 7197.366527 7349.622538 1.022385564 1.059683808 1.004494773 0.995182523 0.875428704 0.891354448 0.979302011 1.128578366 0.979283832 1 12.84345444 -5.989475918 24.92044011 1.014235592 0.960328647 0.08512474 0.066546616 340.7671333 806910.8888 0.009744936 0.017649938 1.02E-06 5.989475918 -0.053906946 TQEDEEEISTS(ph)PGVSEFVSDAFDACNLNQEDLRK ddPTM_HeLa_CUDC101_4h_R1 1 TQEDEEEISTSPGVSEFVSDAFDACNLNQEDLRK 34 1 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 1 0 TQEDEEEIS(0.06)T(0.198)S(0.52)PGVS(0.205)EFVS(0.017)DAFDACNLNQEDLRK 89.311 5.99E-09 5726300 4613.6 4331.8 3998.7 4200.5 5665.2 4553.6 4728 3835.9 4395.4 4223.1 TRUE FALSE FALSE 4072.800802 4465.257624 4214.881817 4371.814546 5247.289483 4466.747667 4910.360544 4272.563351 4214.219752 4197.980813 0.9701809 1.063667945 1.004025984 1.041408892 1.249955566 1.064022888 1.169695804 1.017766288 1.003868274 1 12.03547986 -5.989345013 24.97503112 0.995118273 1.12683782 0.437885926 0.061917503 124.8852618 292725.9409 0.00844966 0.015305949 1.02E-06 5.989345013 0.131719546 LPEQPVDVPSEIADS(ph)SMTRPQELPELPK ddPTM_HeLa_CUDC101_4h_R1 1 LPEQPVDVPSEIADSSMTRPQELPELPK 28 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;P18583-8 P18583-10 SON Protein SON 1 0 LPEQPVDVPS(0.365)EIADS(0.429)S(0.095)MT(0.111)RPQELPELPK 46.307 0.022973 4626300 670.54 555.18 569.21 481.62 297.95 523.28 538.78 226.64 548.83 493.89 TRUE FALSE FALSE 591.9403177 572.2844377 599.9832144 501.2625453 275.9708221 513.2993058 559.5609251 252.4397815 526.2069951 490.9523203 1.205698177 1.165661947 1.222080413 1.021000461 0.562113286 1.045517629 1.139745963 0.514183906 1.071808755 1 8.939439111 -5.989244809 24.99367081 1.114663861 0.847066199 0.382212285 0.188272124 204.0031251 474073.4827 0.027621668 0.050035354 1.03E-06 5.989244809 -0.267597662 VDS(ph)PGRTEPCTAALDLGVQLTPETLVEAK ddPTM_HeLa_CUDC101_4h_R1 1 VDSPGRTEPCTAALDLGVQLTPETLVEAK 29 1 H9KVB4;O15417-2;O15417;O15417-3 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 0 VDS(0.888)PGRT(0.071)EPCT(0.041)AALDLGVQLTPETLVEAK 87.882 3.29E-07 4803300 1422.2 1305.9 1049.3 1274.9 1605.3 1458 1200.9 1286.9 1702.9 1359.3 TRUE FALSE FALSE 1255.491872 1346.133231 1106.028332 1326.895933 1486.880217 1430.191079 1247.219115 1433.395494 1632.705741 1351.214823 0.929157859 0.996239242 0.818543664 0.982002203 1.100402535 1.058448335 0.9230354 1.060819841 1.208324327 1 10.40004134 -5.989215995 24.97384675 0.955782071 1.030750438 0 0.102488104 254.2379689 588765.9905 0.009728012 0.017621769 1.03E-06 5.989215995 0.074968367 LDT(ph)GSPEPETR ddPTM_HeLa_CUDC101_4h_R1 1 LDTGSPEPETR 11 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 LDT(0.643)GS(0.357)PEPETR 176.32 1.82E-06 154400000 4764.4 4267.1 3674.9 3675.3 3505 4193.3 3586.9 2933.5 3749.5 3611.6 TRUE FALSE FALSE 4205.924254 4398.564293 3873.57621 3825.19462 3246.443133 4113.319789 3725.247935 3267.437782 3594.944023 3590.118043 1.171528124 1.225186537 1.078955111 1.065478788 0.904271975 1.145733856 1.037639401 0.910119875 1.00134424 1 11.80981557 -5.988751894 24.956905 1.094990258 1.009151204 0.199591931 0.090073427 336.4809651 746566.2946 0.014651475 0.026542367 1.03E-06 5.988751894 -0.085839055 KLSSWDQAETPGHT(ph)PSLR ddPTM_HeLa_CUDC101_4h_R1 1 KLSSWDQAETPGHTPSLR 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 KLSSWDQAETPGHT(0.903)PS(0.097)LR 103.24 0.00022624 0 1765.4 1503.4 1455.8 1576.3 2148.2 1827.4 1654.6 1529.6 1715.5 1572.4 TRUE FALSE FALSE 1558.462488 1549.717972 1534.504952 1640.588327 1989.731566 1792.54539 1718.418476 1703.723481 1644.786364 1563.047295 0.997066751 0.99147222 0.981739296 1.049608884 1.272982316 1.146827352 1.099402738 1.090001235 1.052294687 1 10.61014572 -5.988597904 24.96619012 0.997601224 1.149778921 0.664312824 0.049583768 88.83035728 194502.8231 0.006777542 0.012278299 1.03E-06 5.988597904 0.152177697 (ac)AASAAAAS(ph)AAAASAASGSPGPGEGSAGGEKR ddPTM_HeLa_CUDC101_4h_R1 1 AASAAAASAAAASAASGSPGPGEGSAGGEKR 31 1 Q13263-2;Q13263 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 1 0 AAS(0.004)AAAAS(0.596)AAAAS(0.023)AAS(0.027)GS(0.346)PGPGEGS(0.003)AGGEKR 62.107 1.58E-09 504390000 2388.2 2377.4 2362 2414.3 2504.4 2757.4 2495.1 2515.9 2571.8 2230.4 TRUE FALSE FALSE 2108.258816 2450.644876 2489.696865 2512.765589 2319.655401 2704.807189 2591.336843 2802.299886 2465.789315 2217.133482 0.950893951 1.105321306 1.122935035 1.133339788 1.046240752 1.219956855 1.168778003 1.263929263 1.112151946 1 11.11447991 -5.988328891 0.497014654 0.972593254 1.245899124 0.433691083 0.067896297 0.487338211 0.206869127 0.015511512 0.059516338 1.03E-06 5.988328891 0.27330587 APELS(ph)QGPQLQK ddPTM_HeLa_CUDC101_4h_R1 1 APELSQGPQLQK 12 0 C9JG08 C9JG08 1 0 APELS(1)QGPQLQK 102.07 0.0099073 13070000 1345.2 1332.4 1251.8 1314.8 1789.6 1404.7 1327 1495.1 1853.1 1395.6 TRUE FALSE FALSE 1187.517695 1373.449665 1319.476094 1368.423227 1657.584773 1377.907688 1378.182835 1665.296141 1776.714434 1387.298909 0.855992668 0.990017116 0.951111607 0.986393933 1.19482886 0.993230571 0.993428904 1.200387407 1.28070052 1 10.43806295 -5.987557187 23.96765997 0.938234273 1.0820944 0 0.131593977 106.9524774 206012.0703 0.012114023 0.021946166 1.03E-06 5.987557187 0.143860127 SLVS(ph)LGVSVSK ddPTM_HeLa_CUDC101_4h_R1 1 SLVSLGVSVSK 11 0 F5GZQ5;I3L0C4;Q96ND8 F5GZQ5 ZNF583 Zinc finger protein 583 1 0 S(0.147)LVS(0.853)LGVSVSK 76.326 0.030229 16940000 5325.3 8124.3 6445 8438.6 12990 11987 12044 6256 9780.6 9122 TRUE FALSE FALSE 4701.076407 8374.600053 6793.436195 8782.762583 12031.75358 11758.36795 12508.54111 6968.157752 9377.439528 9067.741938 0.518439589 0.923559593 0.7491872 0.968572181 1.326874283 1.296725031 1.379454907 0.768455675 1.034153772 1 13.14652762 -5.987038926 3.834237021 0.780237474 1.21227987 0.352465512 0.21216758 0.16159186 5.291155726 0.034892436 0.06334827 1.03E-06 5.987038926 0.432042396 NSGLSK(ac)EQK ddPTM_HeLa_CUDC101_4h_R1 2 NSGLSKEQK 9 1 O95251-4;O95251;O95251-2;E7EUP3;O95251-3;O95251-5 O95251-4 KAT7 Histone acetyltransferase KAT7;Histone acetyltransferase 0 1 ; NSGLSK(1)EQK;NSGLSK(1)EQK 164.66 0.0015062 50848000 8620.7 6219.3 8440 9126.9 8457.3 7248.8 8296.1 7402.8 7362.1 7025.8 FALSE TRUE FALSE 7610.194614 6410.909261 8896.29193 9499.134432 7833.421828 7110.541217 8616.083356 8245.504829 7058.631122 6984.010229 1.089659718 0.91794099 1.273808548 1.360126077 1.12162233 1.01811724 1.233687104 1.18062611 1.010684534 1 12.76983996 -6.753138786 24.99999727 1.034192445 1.195341587 0.488909633 0.094949327 147.8112706 445181.3178 0.015852596 0.022205867 1.77E-07 6.753138786 0.161149142 IAEPS(ph)VCGR ddPTM_HeLa_CUDC101_4h_R1 1 IAEPSVCGR 9 0 A0A3B3IT92;P33991;A0A3B3ITP6;A0A3B3IU45 A0A3B3IT92 MCM4 DNA replication licensing factor MCM4 1 0 IAEPS(1)VCGR 99.788 0.017941 9912400 4965.9 4352.8 3611.9 4059.2 4573.1 3983.2 3575.8 3819.3 3783 4213.8 TRUE FALSE FALSE 4383.80473 4486.904609 3807.170239 4224.751721 4235.751524 3907.227096 3713.719804 4254.073674 3627.063139 4188.73613 1.046569799 1.0711834 0.908906678 1.0085982 1.011224243 0.932793801 0.886596741 1.015598391 0.865908719 1 12.03229929 -5.987002591 0.880403723 1.023076897 0.945342611 0 0.070554302 0.609180509 0.91207759 0.009085103 0.025445532 1.03E-06 5.987002591 -0.077734286 DKAS(ph)PEPEKDFSEK ddPTM_HeLa_CUDC101_4h_R1 1 DKASPEPEKDFSEK 14 2 A0A087WVZ6;A0A087WYS3;H7C4X9;A0A087WV57;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-16;Q9ULU4-4;Q9ULU4-12;Q9ULU4-14;Q9ULU4-21;Q9ULU4-8;Q9ULU4-23;Q9ULU4-17;Q9ULU4-6;Q9ULU4-3;Q9ULU4-19;Q9ULU4-18;Q9ULU4-15;Q9ULU4-2 A0A087WVZ6;Q9ULU4-2 ZMYND8 Protein kinase C-binding protein 1 1 0 DKAS(0.963)PEPEKDFS(0.037)EK 85.51 0.016244 45360000 2102.4 1812.7 1831.8 1702.9 1613.9 1652.2 1621.7 1601.3 1784.4 1795.6 TRUE FALSE FALSE 1855.959859 1868.547138 1930.832649 1772.351623 1494.845812 1620.687038 1684.249512 1783.585519 1710.846277 1784.919691 1.039800204 1.046852218 1.081747632 0.992958748 0.837486314 0.907988771 0.943599603 0.999252531 0.958500422 1 10.80164345 -5.986922098 24.92647208 1.02660352 0.921688417 0.512047972 0.047691489 127.9690298 243907.2145 0.00659051 0.011941497 1.03E-06 5.986922098 -0.104915103 AS(ph)PTSTEEEQVMLR ddPTM_HeLa_CUDC101_4h_R1 2 ASPTSTEEEQVMLR 14 0 Q96PE3-2;Q96PE3-4;Q96PE3-3;Q96PE3 Q96PE3-2 INPP4A "Type I inositol 3,4-bisphosphate 4-phosphatase" 1 0 AS(0.934)PT(0.064)S(0.002)TEEEQVMLR;AS(0.795)PT(0.196)S(0.007)T(0.002)EEEQVMLR ; 143.94 0.00040664 13647000 2857.5 2365.2 2278 2239.7 2238.7 2452.4 2187.9 1902.74 2639.3 2235.96 TRUE FALSE FALSE 2522.548182 2438.069009 2401.155571 2331.044647 2073.555561 2405.624556 2272.288036 2119.34023 2530.506937 2222.66041 1.134922892 1.096914759 1.080306987 1.048763291 0.932916046 1.082317634 1.022328029 0.953515085 1.138503626 1 11.11807183 -5.986245686 24.84890013 1.069266576 1.0037222 0.365803755 0.053708823 277.7178399 501728.3031 0.009172768 0.016621334 1.03E-06 5.986245686 -0.065544376 EES(ph)DEEEEDDEESGR ddPTM_HeLa_CUDC101_4h_R1 2 EESDEEEEDDEESGR 15 0 Q96EV2;H7BXM6;A8MTF7;H7C0H2;Q96EV2-2 Q96EV2 RBM33 RNA-binding protein 33 1 0 EES(1)DEEEEDDEESGR;EES(1)DEEEEDDEESGR ; 204.67 3.71E-17 7972800 1681.01 1495.8 1373.3 1251.63 936.47 1227.03 1162.99 1011.16 1426.78 1264.91 TRUE FALSE FALSE 1483.964556 1541.883825 1447.544752 1302.676881 867.3884738 1203.626447 1207.846914 1126.266367 1367.967525 1257.386259 1.180197847 1.226261074 1.151233157 1.036019657 0.689834542 0.957244791 0.960601331 0.895720276 1.087945343 1 10.29621219 -5.986104799 24.97051301 1.104120829 0.884618896 0.626505188 0.091181332 152.0971029 273325.9497 0.015807709 0.028644536 1.03E-06 5.986104799 -0.219501933 GS(ph)PSSHLLGADHGLR ddPTM_HeLa_CUDC101_4h_R1 1 GSPSSHLLGADHGLR 15 0 F8VU11;Q6NWY9-2;Q6NWY9-3;Q6NWY9 F8VU11 PRPF40B Pre-mRNA-processing factor 40 homolog B 1 0 GS(0.73)PS(0.213)S(0.057)HLLGADHGLR 61.87 0.039531 11211000 1711.3 1026.8 915.04 1192.1 1962.3 1476.6 1516.6 997.99 1688.9 811.24 TRUE FALSE FALSE 1510.704008 1058.434491 964.5098302 1240.718991 1817.545038 1448.436315 1575.09577 1111.597148 1619.282827 806.4147084 1.873358698 1.312518832 1.196046923 1.538561955 2.253858988 1.796143225 1.953208137 1.378443543 2.008002595 1 9.655378143 -5.985498137 24.27288335 1.397680015 1.855421034 0.186938576 0.347009811 184.7785151 309275.1176 0.05535887 0.10031181 1.03E-06 5.985498137 0.457741019 NSK(ac)TAVSASR ddPTM_HeLa_CUDC101_4h_R1 1 NSKTAVSASR 10 1 F8W7U8;P49959;P49959-3 F8W7U8 MRE11A Double-strand break repair protein MRE11A 0 1 NSK(1)TAVSASR 90.827 0.02565 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 ASPIKMDLAPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ASPIKMDLAPSK 12 1 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 ASPIKMDLAPS(1)K 112.11 0.02611 338100000 6250.8 5257.2 4231 4911.6 4869.2 4799.7 4310.3 4011.8 5143.7 4746.8 TRUE FALSE FALSE 5518.0907 5419.168101 4459.740658 5111.916278 4510.008817 4708.153719 4476.549715 4468.487096 4931.674509 4718.565822 1.169442349 1.148477801 0.945147493 1.083362291 0.955800764 0.997793375 0.948709816 0.947001115 1.045163869 1 12.20413271 -5.985167328 1.146770174 1.082897936 0.958188325 0.371625253 0.063588742 0.446994673 1.162027905 0.013254544 0.031849568 1.03E-06 5.985167328 -0.124709611 SSSSSAS(ph)PS(ph)SPSSREEK ddPTM_HeLa_CUDC101_4h_R1 1 SSSSSASPSSPSSREEK 17 1 E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 S(0.001)S(0.002)S(0.011)S(0.011)S(0.015)AS(0.96)PS(0.979)S(0.019)PS(0.002)SREEK 107.82 0.015851 4739200 2056.8 2681.5 2571.3 2808.1 4733.7 2982.4 3366 2951 3483.1 3473.2 TRUE FALSE FALSE 1815.705022 2764.113837 2710.312256 2922.626456 4384.504382 2925.515689 3495.827748 3286.929912 3339.525144 3452.541252 0.525903933 0.800602697 0.785019514 0.846514565 1.269935408 0.847351407 1.012537575 0.952032046 0.96726582 1 11.75344294 -5.985023616 24.70113508 0.77511464 1.013869314 0.262209979 0.157312715 227.5826721 375358.3143 0.028842921 0.052267861 1.04E-06 5.985023616 0.238754674 VEMYS(ph)GSDDDDDFNKLPK ddPTM_HeLa_CUDC101_4h_R1 2 VEMYSGSDDDDDFNKLPK 18 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 VEMYS(0.993)GS(0.007)DDDDDFNKLPK;VEMYS(0.5)GS(0.5)DDDDDFNKLPK ; 91.589 0.0026119 37534700 2317.71 2230.2 2080.59 2305.5 2806.2 2464.2 2390.1 2526.8 2287.4 2462.1 TRUE FALSE FALSE 2046.031547 2298.909819 2193.072989 2399.528255 2599.192217 2417.199491 2482.286958 2814.440698 2193.112404 2447.45532 0.835983207 0.939306144 0.896062523 0.980417594 1.061997821 0.987637842 1.014231777 1.149945691 0.896078628 1 11.25706681 -5.98476273 3.491657126 0.920457126 1.045678386 0.582913866 0.055395439 0.1827278 4.749595094 0.010776677 0.019723297 1.04E-06 5.98476273 0.125221259 TALPTSGSSAGELELLAGEVPARS(ph)PGAFDMSGVR ddPTM_HeLa_CUDC101_4h_R1 3 TALPTSGSSAGELELLAGEVPARSPGAFDMSGVR 34 1 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 TALPTSGSS(0.001)AGELELLAGEVPARS(0.965)PGAFDMS(0.034)GVR;TALPTSGSSAGELELLAGEVPARS(1)PGAFDMSGVR;TALPTSGSSAGELELLAGEVPARS(0.999)PGAFDMS(0.001)GVR ;; 127.25 7.01E-19 39916500 2878 2830.75 2905.64 2985.71 4107.97 3430.54 3175.02 2901.56 3186.55 3396.87 TRUE FALSE FALSE 2540.645203 2917.962052 3062.727687 3107.480159 3804.933237 3365.108165 3297.481585 3231.861862 3055.19906 3376.665266 0.752412514 0.864154964 0.907027332 0.920280784 1.126831633 0.996577363 0.976549739 0.957116447 0.904797728 1 11.72138345 -5.984720085 24.44515813 0.881487716 1.011966609 0.426420609 0.070636619 190.838397 305305.1501 0.014879621 0.026964227 1.04E-06 5.984720085 0.130478894 VVDNS(ph)PPPALPPK ddPTM_HeLa_CUDC101_4h_R1 1 VVDNSPPPALPPK 13 0 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 VVDNS(1)PPPALPPK 113.76 0.0036307 21904000 4354.8 3790.1 3476.4 3700.9 4313.5 4055.7 3874.9 3244.2 3783.5 3844 TRUE FALSE FALSE 3844.336945 3906.868489 3664.3447 3851.838699 3995.301699 3978.34428 4024.356191 3613.506614 3627.542529 3821.135717 1.006071815 1.022436463 0.95896743 1.008035041 1.045579638 1.041141842 1.053183265 0.945662987 0.949336218 1 11.89978578 -5.984309742 24.57290158 1.000933549 1.025290195 0.11313409 0.035629398 322.1248144 504483.9078 0.004353149 0.007888781 1.04E-06 5.984309742 0.024356645 SAQQEASADVAT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SAQQEASADVATPK 14 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 SAQQEASADVAT(1)PK;SAQQEAS(0.001)ADVAT(0.999)PK ; 191.37 6.62E-11 18647700 4029.7 3736.9 4163.5 3542.1 3909 3983.9 2870.46 1119.63 3822.4 4465.9 TRUE FALSE FALSE 3557.344675 3852.02946 4388.591404 3686.562148 3620.640858 3907.913745 2981.174604 1247.084153 3664.839054 4439.336628 0.80132348 0.867703845 0.988569188 0.830430863 0.815581507 0.880292276 0.671536054 0.280916781 0.825537543 1 12.11612839 -4.221283711 1.498604275 0.897742092 6.30E-15 0.87887446 0.067325495 0.360369288 0.67942481 0.012199354 0.491122023 6.01E-05 4.221283711 -0.897742092 down ASCGPPS(ph)LPDPTFLPDAER ddPTM_HeLa_CUDC101_4h_R1 1 ASCGPPSLPDPTFLPDAER 19 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 ASCGPPS(1)LPDPTFLPDAER 131.45 4.04E-05 4648100 572.88 540.91 522.85 466.57 453.9 445.46 487.36 350.42 726.92 527.59 TRUE FALSE FALSE 505.7278748 557.574796 551.1168525 485.5987413 420.4167013 436.9635927 506.1576385 390.3103964 696.9560499 524.4518712 0.96429797 1.063157225 1.050843524 0.925916691 0.801630663 0.833181492 0.965117423 0.744225386 1.328922801 1 9.034666573 -5.984112182 5.274086554 0.994534789 0.846034484 0.398205101 0.121407266 0.093697516 7.771010599 0.008685384 0.015589782 1.04E-06 5.984112182 -0.148500305 QENEDSSDAT(ph)TPVPR ddPTM_HeLa_CUDC101_4h_R1 1 QENEDSSDATTPVPR 15 0 Q6P4R8-3;Q6P4R8;Q6P4R8-2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 QENEDS(0.076)S(0.051)DAT(0.862)T(0.011)PVPR 152.94 7.74E-07 0 633.35 490.82 580.13 575.89 595.64 799.65 708 436.44 576.78 527 TRUE FALSE FALSE 559.1096731 505.9415824 611.4935826 599.3772834 551.7008239 784.3980086 735.3077972 486.1225654 553.0048843 523.8653806 1.067277384 0.965785488 1.167272367 1.144143716 1.053134726 1.497327439 1.403619755 0.927953218 1.05562403 1 9.033052315 -5.984046253 1.167747279 1.03024481 1.267319671 0.236105144 0.154237047 0.432549682 1.166997018 0.024708114 0.058870218 1.04E-06 5.984046253 0.237074861 SGAQASS(ph)TPLS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 2 SGAQASSTPLSPTR 14 0 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 SGAQAS(0.084)S(0.532)T(0.384)PLS(0.782)PT(0.218)R;S(0.001)GAQAS(0.104)S(0.528)T(0.368)PLS(0.889)PT(0.111)R ; 135.55 0.0063852 832940000 11745.4 10262.7 9544.3 9635.4 11346.8 9901.3 8486 2675.6 11737.7 11850.6 TRUE FALSE FALSE 10368.62202 10578.88162 10060.29373 10028.37326 10509.76917 9712.449199 8813.307863 2980.179489 11253.86704 11780.1121 0.88018025 0.898028943 0.854006621 0.851296929 0.892162067 0.824478504 0.748151442 0.252983967 0.955327669 1 13.52406565 -4.221261616 1.588530475 0.919840554 2.80E-25 0.93609666 0.050194683 0.251778274 0.547378916 0.009461345 0.367881981 6.01E-05 4.221261616 -0.919840554 down DKDSGSSS(ph)PLPK ddPTM_HeLa_CUDC101_4h_R1 2 DKDSGSSSPLPK 12 1 Q86VQ1;H7C0B2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 DKDS(0.007)GS(0.022)S(0.236)S(0.735)PLPK;DKDS(0.009)GS(0.006)S(0.075)S(0.91)PLPK ; 93.716 0.0094607 177404000 23432 18206.4 17959.1 18214.4 18040.8 17262 16877.4 14163.2 20285 19268.3 TRUE FALSE FALSE 20685.33648 18767.3176 18930.02327 18957.26196 16709.96613 16932.75611 17528.36697 15775.48144 19448.84371 19153.69129 1.079966058 0.979827717 0.988322458 0.98974457 0.872414924 0.884046623 0.915143024 0.823626172 1.015409689 1 14.22533483 -5.983527794 1.05803436 1.035228891 0.867189016 0.772899435 0.035318466 0.185464347 0.408459626 0.006959219 0.01748747 1.04E-06 5.983527794 -0.168039875 ESVS(ph)PEDSEK ddPTM_HeLa_CUDC101_4h_R1 2 ESVSPEDSEK 10 0 A0A1W2PP02;P35251-2;P35251 A0A1W2PP02;P35251-2 RFC1 Replication factor C subunit 1 1 0 ESVS(0.96)PEDS(0.04)EK;ESVS(0.989)PEDS(0.011)EK ; 199.8 6.10E-17 320663000 17967 17362.1 17886.1 15719 14110.1 15563.9 14486.8 12080.9 12752.8 19960.7 TRUE FALSE FALSE 15860.9355 17897.00572 18853.07667 16360.08876 13069.22603 15267.04454 15045.56073 13456.14082 12227.12419 19841.97287 0.799362826 0.901977129 0.950161397 0.824519259 0.658665654 0.769431782 0.758269393 0.678165468 0.616225225 1 14.27626786 -5.982896402 5.091439104 0.905165579 0.723607329 0.201895381 0.107438534 0.109115826 8.006301577 0.012028761 0.021625124 1.04E-06 5.982896402 -0.18155825 QGNCRPPRCICSALGLLAPWMAVVLS(ph)QGK ddPTM_HeLa_CUDC101_4h_R1 1 QGNCRPPRCICSALGLLAPWMAVVLSQGK 29 2 H0Y5M2 H0Y5M2 L3MBTL2 1 0 QGNCRPPRCICSALGLLAPWMAVVLS(1)QGK 53.987 0.0040381 27941000 1881.5 1602.3 1534.9 1526.4 960.11 1448.7 1306.1 1205.1 1544.9 1799.7 TRUE FALSE FALSE 1660.953422 1651.664964 1617.881337 1588.65319 889.2845981 1421.068461 1356.476715 1342.283713 1481.218568 1788.995304 0.92842805 0.923236053 0.904351919 0.888014175 0.497086044 0.794338844 0.758233804 0.7503003 0.827961127 1 10.80493389 -5.982750107 24.96806055 0.954566768 0.708596788 0.562780552 0.088640316 102.9464805 149007.2671 0.011715346 0.021232658 1.04E-06 5.982750107 -0.24596998 YNLDAS(ph)EEEDSNKKK ddPTM_HeLa_CUDC101_4h_R1 1 YNLDASEEEDSNKKK 15 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 YNLDAS(1)EEEDSNKKK 73.735 0.026957 292620000 4497.8 3824.3 3563.4 3512.8 2899.4 3376.2 3596.4 3286.3 3670.3 3571.4 TRUE FALSE FALSE 3970.574702 3942.12215 3756.048183 3656.067168 2685.517038 3311.80461 3735.114353 3660.399108 3519.008681 3550.157154 1.118422236 1.110407787 1.057994906 1.029832486 0.756450186 0.93286141 1.052098313 1.031052697 0.991226171 1 11.79366717 -5.982555876 24.99740027 1.061631399 0.943039389 0.292285416 0.083025417 242.5831561 347619.2886 0.013136972 0.023809152 1.04E-06 5.982555876 -0.11859201 ADDTDSQSWRS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 1 ADDTDSQSWRSPLK 14 1 O75369-8 O75369-8 FLNB Filamin-B 1 0 ADDT(0.061)DS(0.043)QS(0.063)WRS(0.833)PLK 62.469 0.037452 137520000 2984.8 2668.4 2687 2713.2 3939.8 3120.4 3134.7 2511.9 3428.8 2717.3 TRUE FALSE FALSE 2634.926269 2750.610241 2832.267348 2823.856023 3649.168803 3060.883569 3255.606429 2797.844543 3287.463413 2701.137379 0.975487692 1.018315567 1.048546205 1.045432212 1.350974901 1.133183226 1.205272436 1.035802386 1.217066351 1 11.3993513 -5.981924178 24.99531576 0.997209943 1.181910157 0.198611967 0.102346381 123.4954764 170769.0531 0.010427803 0.018899651 1.04E-06 5.981924178 0.184700214 SAQGSSSPVPSMVQKS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SAQGSSSPVPSMVQKSPR 18 1 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 SAQGSSSPVPS(0.006)MVQKS(0.994)PR;SAQGSSSPVPS(0.035)MVQKS(0.965)PR ; 104.97 0.00051318 66969000 5108.5 5077.9 4573.2 4930.7 5891.4 4914.7 5264.6 5139.1 5038.8 5398.5 TRUE FALSE FALSE 4509.689374 5234.34408 4820.441025 5131.795258 5456.803159 4820.960286 5467.657386 5724.114371 4831.098531 5366.389482 0.840358194 0.975393996 0.898265219 0.956284533 1.016848139 0.898361981 1.01887077 1.066660255 0.900251193 1 12.38973605 -5.981540079 5.539777111 0.925520867 0.993844288 0.288519909 0.056794554 0.242603341 23.25825323 0.010604398 0.019054143 1.04E-06 5.981540079 0.068323421 GEEGS(ph)DDDETENGPKPK ddPTM_HeLa_CUDC101_4h_R1 7 GEEGSDDDETENGPKPK 17 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 GEEGS(0.969)DDDET(0.031)ENGPKPK;GEEGS(0.941)DDDET(0.059)ENGPKPK;GEEGS(0.995)DDDET(0.005)ENGPKPK;GEEGS(0.999)DDDET(0.001)ENGPKPK;GEEGS(0.997)DDDET(0.003)ENGPKPK;GEEGS(1)DDDETENGPKPK;GEEGS(0.996)DDDET(0.004)ENGPKPK ;;;;;; 188.9 1.64E-10 1338074000 21528.1 18236.1 19635.3 18761 18482.1 18948.5 18530 17295.3 20745.6 20826.9 TRUE FALSE FALSE 19004.60875 18797.93263 20696.84371 19526.15467 17118.7123 18587.08893 19244.70831 19264.12704 19890.45759 20703.02067 0.917963086 0.907980189 0.99970164 0.943154865 0.826870271 0.89779599 0.929560406 0.930498373 0.960751472 1 14.33755366 -5.98100821 24.9944758 0.958635173 0.896972277 0.364279529 0.03837067 236.3592922 311063.0499 0.006685082 0.012116527 1.04E-06 5.98100821 -0.061662896 DQS(ph)PFSK ddPTM_HeLa_CUDC101_4h_R1 3 DQSPFSK 7 0 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 DQS(0.931)PFS(0.069)K;DQS(0.913)PFS(0.087)K;DQS(0.992)PFS(0.008)K ;; 128.86 0.010928 1373790000 24725.4 18904 20293.2 20803.3 18908.8 19847.2 19546.5 15696.9 22897.4 21747.9 TRUE FALSE FALSE 21827.12609 19486.40983 21390.31178 21651.74849 17513.9355 19468.64773 20300.41505 17483.77165 21953.55948 21618.54252 1.009648364 0.901374818 0.989442824 1.001535995 0.810134887 0.900553204 0.939027922 0.80873961 1.015496741 1 14.39998164 -5.980055176 0.608106506 1.005261942 0.856220749 0.491527122 0.054056021 0.571215645 0.378084055 0.01161367 0.04119562 1.05E-06 5.980055176 -0.149041193 GSDIDNPTLTVMDIS(ph)PPS(ph)RSPR ddPTM_HeLa_CUDC101_4h_R1 1 GSDIDNPTLTVMDISPPSRSPR 22 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 2 0 GSDIDNPTLT(0.003)VMDIS(0.951)PPS(0.817)RS(0.229)PR 54.008 0.020096 6709200 2150.9 2114.1 1969 1735.6 2026.6 1638.8 1676.5 1693.1 1795.2 2002.1 TRUE FALSE FALSE 1898.774763 2179.232915 2075.450096 1806.38527 1877.101756 1607.54262 1741.163167 1885.83566 1721.201096 1990.19142 0.9540664 1.094986589 1.042839435 0.907643984 0.943176489 0.807732665 0.87487221 0.947564963 0.864841984 1 10.95869148 -5.979816602 2.602043113 0.992341773 0.884466025 0.322548936 0.067246506 0.203197999 2.779820844 0.008707092 0.016486399 1.05E-06 5.979816602 -0.107875748 WASLADS(ph)YSDPGLTEDGLGR ddPTM_HeLa_CUDC101_4h_R1 1 WASLADSYSDPGLTEDGLGR 20 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 WAS(0.015)LADS(0.406)Y(0.111)S(0.321)DPGLT(0.147)EDGLGR 79.514 0.0040587 6611400 923.85 789.4 784.15 664.21 725.4 649.77 556.97 559.36 835.24 889.19 TRUE FALSE FALSE 815.5577035 813.7204783 826.5435209 691.2993548 671.8886872 637.3767198 578.4525195 623.0352814 800.8110537 883.9010583 0.922679859 0.920601317 0.935108645 0.782100381 0.760140155 0.721095098 0.654431301 0.704869935 0.905996261 1 9.787741077 -5.979767499 0.655306744 0.972653787 0.655252719 0.901082003 0.035587653 0.148573373 0.116246474 0.006882395 0.023409967 1.05E-06 5.979767499 -0.317401068 S(ph)GEQIT(ph)SSPVSPK ddPTM_HeLa_CUDC101_4h_R1 1 SGEQITSSPVSPK 13 0 A0A087WZV0;O43314-2;O43314;A0A087WWN8 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 2 0 S(0.999)GEQIT(0.559)S(0.249)S(0.192)PVSPK 88.282 0.0029422 0 3863.7 3973.8 3817.6 4126.7 4784.9 4835.4 3851.9 4334.8 4289.4 4750.8 TRUE FALSE FALSE 3410.802943 4096.228068 4023.991004 4295.004663 4431.92746 4743.172801 4000.469073 4828.25611 4112.589116 4722.54203 0.722238769 0.86737779 0.852081565 0.909468806 0.938462259 1.004368573 0.847100788 1.022384995 0.870842248 1 12.20534792 -5.979209796 2.7096184 0.86429982 0.949452917 0.239144389 0.076007743 0.483847007 7.200623143 0.016743489 0.03154055 1.05E-06 5.979209796 0.085153097 TSSISGPLS(ph)PAYTGQVPYNYNQLEGR ddPTM_HeLa_CUDC101_4h_R1 1 TSSISGPLSPAYTGQVPYNYNQLEGR 26 0 Q01082-3 Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 T(0.009)S(0.009)S(0.009)IS(0.083)GPLS(0.884)PAY(0.003)T(0.003)GQVPYNYNQLEGR 69.7 0.000256 13055000 1731.3 1654.8 1884.1 1864.7 2543.7 2030 2108 1588.8 2292.1 2278.7 TRUE FALSE FALSE 1528.359638 1705.782427 1985.960145 1940.750526 2356.056319 1991.281132 2189.306266 1769.66257 2197.618668 2265.146191 0.674728918 0.753056219 0.876747008 0.856788199 1.040134331 0.879096078 0.96651875 0.781257553 0.970188448 1 11.14538845 -5.978935562 24.85640105 0.83741567 0.921472352 0.060017061 0.108054851 483.876117 570978.9257 0.0201843 0.036584546 1.05E-06 5.978935562 0.084056682 RREEGPPPPS(ph)PDGAS(ph)SDAEPEPPSGR ddPTM_HeLa_CUDC101_4h_R1 2 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 Q9NTJ3;C9JWF0;C9IYK2;C9JJ64;C9JR83;E9PD53;Q9NTJ3-2;F8WCB7 Q9NTJ3 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 2 0 RREEGPPPPS(1)PDGAS(0.59)S(0.396)DAEPEPPS(0.014)GR;RREEGPPPPS(1)PDGAS(0.648)S(0.344)DAEPEPPS(0.008)GR ; 75.127 0.0012883 121337000 4278.84 3686.8 3725.1 3787.33 4874.4 3840.08 3478.97 3969.9 4455.4 4083.6 TRUE FALSE FALSE 3777.280862 3800.385938 3926.490174 3941.793688 4514.825223 3766.836872 3613.155038 4421.817369 4271.746526 4059.310566 0.930522758 0.93621463 0.967280062 0.97105004 1.112214784 0.92794991 0.890090812 1.089302555 1.052333015 1 11.98701901 -5.977538984 24.99938196 0.963792112 0.9974987 0.017572097 0.069993751 601.9546879 669979.5133 0.009589631 0.017381865 1.05E-06 5.977538984 0.033706588 FSS(ph)KNQLK ddPTM_HeLa_CUDC101_4h_R1 1 FSSKNQLK 8 1 H7C5R8;Q460N5-5;Q460N5-3;Q460N5-4;Q460N5-1;Q460N5 H7C5R8 PARP14 Poly [ADP-ribose] polymerase 14 1 0 FS(0.084)S(0.916)KNQLK 82.241 0.0026986 0 491.09 511.57 513.25 577.79 791.92 809.07 619.61 552.61 537.92 636.23 TRUE FALSE FALSE 433.5251746 527.3308653 540.9978475 601.3547736 733.5016393 793.6383378 643.5085653 615.5168887 515.7467099 632.4456757 0.68547417 0.833796302 0.855406035 0.950840201 1.159785998 1.254871949 1.017492237 0.97323282 0.815479858 1 9.304797754 -5.976480721 3.466406085 0.847183054 1.105402581 0.599003028 0.10109278 0.172356068 4.388013459 0.020847457 0.038328446 1.06E-06 5.976480721 0.258219527 SSRRGPKST(ph)AS(ph)AS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SSRRGPKSTASASPR 15 3 Q5TG92-2;Q5TG92 Q5TG92-2 C1orf195 Putative uncharacterized protein C1orf195 3 0 SS(0.005)RRGPKS(0.057)T(0.978)AS(0.967)AS(0.994)PR 74.76 0.0019511 0 684.97 683.79 1020 757.92 726.78 739 710.49 791.56 997.41 951.5 TRUE FALSE FALSE 604.6788549 704.8567594 1075.144285 788.8312536 673.1668873 724.9048063 737.8938373 881.6679908 956.2963376 945.8404357 0.63930324 0.74521741 1.136707889 0.834000349 0.711712951 0.766413423 0.780146216 0.932152991 1.011054615 1 9.88545301 -5.976264506 24.7724674 0.844981749 0.79147185 0.03489351 0.1469287 898.5351973 937785.638 0.025662414 0.046515018 1.06E-06 5.976264506 -0.053509899 NSPTFK(ac)SFEEK ddPTM_HeLa_CUDC101_4h_R1 1 NSPTFKSFEEK 11 1 H0YC42;P55327-2;P55327-4;P55327;P55327-7;P55327-5;P55327-6;P55327-3;E5RK35 H0YC42 TPD52 Tumor protein D52 0 1 NSPTFK(1)SFEEK 107.09 0.0065778 323270 0 0 0 0 0 0 116.88 0 0 67.677 FALSE TRUE FALSE 0 0 0 0 0 0 121.3881008 0 0 67.27445419 0 0 0 0 0 0 1.804371395 0 0 1 6.071986876 -9.370578543 1.103040085 0.998473693 0.223839137 0 0.614385527 0.61946667 1.35243391 0.366419396 0.095468452 4.26E-10 9.370578543 -0.774634556 GDLAFGAPGPRPPS(ph)PFDDPADDPEHKEAEGSSSSK ddPTM_HeLa_CUDC101_4h_R1 1 GDLAFGAPGPRPPSPFDDPADDPEHKEAEGSSSSK 35 2 Q7Z3Z5;Q93074-3;Q93074;Q93074-2 Q7Z3Z5 TNRC11;MED12 Mediator of RNA polymerase II transcription subunit 12 1 0 GDLAFGAPGPRPPS(0.997)PFDDPADDPEHKEAEGS(0.001)S(0.001)S(0.001)S(0.001)K 41.551 0.019279 19928000 1999.1 1263.4 1136.6 1418.5 2163 1625.3 1733 1223.4 1581.4 1168 TRUE FALSE FALSE 1764.768528 1302.323857 1198.048034 1476.352561 2003.439799 1594.30011 1799.842391 1362.666911 1516.214023 1161.052684 1.519972825 1.121675075 1.031863627 1.271563799 1.725537374 1.373150532 1.550181499 1.173647785 1.305895971 1 10.18121772 -5.976218511 24.82423586 1.222722349 1.461749135 0.29091154 0.189677401 278.1534341 290347.9697 0.034667645 0.062838146 1.06E-06 5.976218511 0.239026786 LLMQPLSSIHVRT(ph)ET(ph)LALT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 LLMQPLSSIHVRTETLALTK 20 1 Q5UIP0-2;Q5UIP0;H7BZN3 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 3 0 LLMQPLSSIHVRT(1)ET(1)LALT(1)K 48.907 0.035538 10189000 1122 999.84 960.71 999.52 1219.4 998.65 1001.1 1072.4 1124.7 1079.7 TRUE FALSE FALSE 990.4808608 1030.643885 1012.648889 1040.284746 1129.447291 979.6024151 1039.712762 1194.477681 1078.33939 1073.277896 0.92285592 0.96027682 0.943510429 0.969259452 1.052334438 0.912720199 0.968726521 1.112924887 1.004715921 1 10.06780796 -5.976127777 24.95724572 0.960778581 1.002697434 0.130787367 0.053915886 389.899651 407618.9314 0.00802051 0.014537921 1.06E-06 5.976127777 0.041918853 S(ph)RSPLELEPEAK ddPTM_HeLa_CUDC101_4h_R1 1 SRSPLELEPEAK 12 1 A0A087WTQ7;A0A087WV56;A0A087WW71;A0A087X0X5;Q92466-3;Q92466-2;Q92466-5;Q92466-4;Q92466 A0A087WTQ7 DDB2 DNA damage-binding protein 2 1 0 S(0.694)RS(0.306)PLELEPEAK 142.57 0.00065602 1641900000 8177.3 7451.6 7517.1 7180.5 7610.7 7375.6 6824.3 7117.1 7033.9 7730.4 TRUE FALSE FALSE 7218.76929 7681.174964 7923.497164 7473.351827 7049.273824 7234.922719 7087.515537 7927.281896 6743.959665 7684.419237 0.939403365 0.999577812 1.031112036 0.972533069 0.917346335 0.941505467 0.922322861 1.031604556 0.87761475 1 12.90772051 -5.976036047 24.90544982 0.978359852 0.949502827 0.01013454 0.048934565 409.4297773 425512.8138 0.005961853 0.010806408 1.06E-06 5.976036047 -0.028857025 GSLAEAVGSPPPAAT(ph)PTPTPPTR ddPTM_HeLa_CUDC101_4h_R1 2 GSLAEAVGSPPPAATPTPTPPTR 23 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 GSLAEAVGS(0.138)PPPAAT(0.616)PT(0.184)PT(0.056)PPT(0.006)R;GSLAEAVGS(0.001)PPPAAT(0.956)PT(0.032)PT(0.01)PPT(0.002)R ; 148.69 5.82E-12 28041000 3222.4 2800.19 2724.85 2603.37 3119.36 2182.77 2450.81 2226.55 2823.16 3347.28 TRUE FALSE FALSE 2844.675157 2886.460535 2872.163633 2709.546681 2889.251027 2141.137299 2545.338563 2480.011452 2706.78815 3327.37023 0.854931961 0.86749004 0.863193283 0.814320768 0.868328688 0.643492353 0.764970048 0.745336792 0.813491726 1 11.70016669 -5.975601457 0.044600826 1.615095433 5.33E-13 0.29572274 0.07495951 41.7972602 0.625627624 9.725717903 12.9169071 1.06E-06 5.975601457 -1.615095433 KYESDEDS(ph)LGS(ph)SGR ddPTM_HeLa_CUDC101_4h_R1 1 KYESDEDSLGSSGR 14 1 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase 2 0 KYES(0.028)DEDS(0.981)LGS(0.981)S(0.01)GR 101.45 0.013562 21959000 6966.8 6459 6269.8 6597.1 8123.6 7113.6 7606.2 5781.2 6813.2 7091.3 TRUE FALSE FALSE 6150.162265 6657.994134 6608.764353 6866.158253 7524.338212 6977.919932 7899.573682 6439.30844 6532.357012 7049.120632 0.872472268 0.944514143 0.937530324 0.974044652 1.067415158 0.98989935 1.120646687 0.913491026 0.926691052 1 12.78322758 -5.975573154 4.878767081 0.939030625 1.027489846 0.332821203 0.057504097 0.184622958 11.40261467 0.009495608 0.017166553 1.06E-06 5.975573154 0.088459221 NSQEDSEDSEDKDVK ddPTM_HeLa_CUDC101_4h_R1 2 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 0 ; ; 167.69 7.10E-06 42091000 4688.4 3807.7 5236.5 4410.6 4990.9 3977.3 3747 2669.8 4926.5 5168.2 FALSE FALSE TRUE 4138.832859 3925.010724 5519.60103 4590.483332 4622.73125 3901.439629 3891.523045 2973.71924 4723.427585 5137.459317 0.805618615 0.763998405 1.074383404 0.893531812 0.899808829 0.759410321 0.75748007 0.578830713 0.919409244 1 12.32683935 -4.33738104 0.915947281 0.907811874 0.43957297 0.592128101 0.086035408 1.200746237 0.810687448 0.015857068 0.543621266 4.60E-05 4.33738104 -0.468238905 AELGMGDSTSQS(ph)PPIKR ddPTM_HeLa_CUDC101_4h_R1 2 AELGMGDSTSQSPPIKR 17 1 Q9NR19;Q9NR19-2 Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" 1 0 AELGMGDS(0.01)T(0.009)S(0.067)QS(0.914)PPIKR;AELGMGDS(0.017)T(0.015)S(0.191)QS(0.776)PPIKR ; 63.225 0.022243 59025000 3245.5 3174.9 2847.6 2915.2 2729.5 2983.6 2553.6 2828.2 3245.7 3305.9 TRUE FALSE FALSE 2865.06741 3272.714906 3001.54987 3034.094457 2528.150223 2926.692801 2652.093207 3150.150856 3111.910872 3286.23636 0.87183851 0.995885429 0.91337005 0.923273351 0.769314786 0.890591084 0.807030571 0.958589253 0.946952846 1 11.68222053 -5.975559194 24.89941266 0.94029106 0.85417414 0.345228458 0.058106023 215.9400796 219990.8034 0.009470758 0.017166727 1.06E-06 5.975559194 -0.08611692 NSRPEANEALER ddPTM_HeLa_CUDC101_4h_R1 1 NSRPEANEALER 12 1 Q9Y696 Q9Y696 CLIC4 Chloride intracellular channel protein 4 0 0 97.957 0.016573 11740000 1840.6 1522.6 2008.9 1787 2247.4 1676.2 1638.7 1516.7 1785.4 1927.1 FALSE FALSE TRUE 1624.847658 1569.509501 2117.507211 1859.881584 2081.613779 1644.229278 1701.905208 1689.354997 1711.805056 1915.637523 0.848202041 0.819314449 1.105379898 0.970894317 1.08664283 0.858319623 0.888427579 0.881876126 0.893595493 1 10.90360889 STEIS(ph)SETGSDFSMFEALR ddPTM_HeLa_CUDC101_4h_R1 1 STEISSETGSDFSMFEALR 19 0 A0A5H1ZRS1;Q15154-5;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 STEIS(0.531)S(0.454)ET(0.011)GS(0.003)DFSMFEALR 81.317 0.0022884 0 359.86 397.43 396.47 396.13 576.64 392.51 368.9 561.94 441.86 469.68 TRUE FALSE FALSE 317.6777563 409.6743472 417.9043675 412.2858936 534.102416 385.0235257 383.1285966 625.9089782 423.6463438 466.8863225 0.680417783 0.877460588 0.895088049 0.883054126 1.143966722 0.824662251 0.820603599 1.340602515 0.907386495 1 8.866927515 -5.975386809 24.32793162 0.852625395 1.003862097 0.177857248 0.159847757 260.1199889 257103.2815 0.026000498 0.047128241 1.06E-06 5.975386809 0.151236702 ECINAAPDS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 3 ECINAAPDSPSK 12 0 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 0 ECINAAPDS(0.836)PS(0.164)K;ECINAAPDS(0.994)PS(0.006)K;ECINAAPDS(0.972)PS(0.028)K ;; 217.79 1.26E-24 360668000 20196.1 15293.8 15697.4 15027.2 14625.7 14994.7 14532.8 14255.4 15974.2 13927.4 TRUE FALSE FALSE 17828.74377 15764.98385 16546.04893 15640.07417 13546.79125 14708.70108 15093.33496 15878.17711 15315.73671 13844.55921 1.287779806 1.138713311 1.195130064 1.129691017 0.978492059 1.062417435 1.090199749 1.146889322 1.106263947 1 13.7570315 -5.97500021 24.71568255 1.144458732 1.068424719 0.179110013 0.077603806 394.6090603 390122.0434 0.01675826 0.030376307 1.06E-06 5.97500021 -0.076034013 GALQGSAWQVS(ph)SEDVR ddPTM_HeLa_CUDC101_4h_R1 1 GALQGSAWQVSSEDVR 16 0 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 1 0 GALQGS(0.016)AWQVS(0.492)S(0.492)EDVR 73.834 0.026161 3229300 741.14 833.47 743.15 690.36 606.2 605.53 687.19 651.24 775.22 777.82 TRUE FALSE FALSE 654.2646927 859.1482228 783.3269369 718.5158648 561.4818337 593.9805241 713.6951485 725.3745292 743.2651035 773.193492 0.846184945 1.111168461 1.013105962 0.929283384 0.726185411 0.76821718 0.923048572 0.938153951 0.961292498 1 9.594685684 -5.973283737 24.78319678 0.949080667 0.838346808 0.345937293 0.088507246 245.1593428 227419.4279 0.015155471 0.027471092 1.06E-06 5.973283737 -0.110733859 FDSPDLLLEAGDPAT(ph)SPCR ddPTM_HeLa_CUDC101_4h_R1 1 FDSPDLLLEAGDPATSPCR 19 0 A0A096LNM2;Q969U6-2;Q969U6 A0A096LNM2 FBXW5 F-box/WD repeat-containing protein 5 1 0 FDSPDLLLEAGDPAT(0.553)S(0.447)PCR 81.656 0.027878 2847700 876.27 943.89 800.59 862.24 1120.7 1028.7 990.58 690.33 972.93 906.02 TRUE FALSE FALSE 773.5549589 972.9701321 843.8723171 897.4058741 1038.028194 1009.079261 1028.787002 768.9143768 932.8254136 900.6309527 0.858903368 1.080320557 0.936979031 0.99641909 1.15255665 1.120413704 1.142295853 0.853750778 1.035746563 1 9.814792251 -5.973059378 6.732817978 0.946106571 1.076707817 0.088503057 0.099165077 0.178186027 28.05879489 0.014646967 0.0264348 1.06E-06 5.973059378 0.130601246 VS(ph)PAGGTLDDKPK ddPTM_HeLa_CUDC101_4h_R1 1 VSPAGGTLDDKPK 13 1 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 1 0 VS(0.999)PAGGT(0.001)LDDKPK 64.04 0.038035 26875000 3903.6 2945 3329.5 3038.1 2905.6 3042.1 2703.4 2521.4 3753.8 3454 TRUE FALSE FALSE 3446.025925 3035.731959 3509.502841 3162.00685 2691.259677 2984.077011 2807.671044 2808.425984 3599.066775 3433.455454 1.003661172 0.884162326 1.022148936 0.920940112 0.783834161 0.86911773 0.817739179 0.817959057 1.048234591 1 11.74544553 -5.972867796 4.160249502 0.992099744 0.825848416 0.76148513 0.044616378 0.069347234 2.739439714 0.006037613 0.010992932 1.06E-06 5.972867796 -0.166251329 EISS(ph)SPTSK ddPTM_HeLa_CUDC101_4h_R1 1 EISSSPTSK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EISS(0.476)S(0.476)PT(0.039)S(0.009)K 98.04 0.01958 131090000 8953.8 3134.6 7830.9 8110.4 4997.6 4103.1 4505.7 1975.7 8517.6 10296 TRUE FALSE FALSE 7904.249137 3231.173311 8254.262141 8441.177168 4628.937005 4024.840204 4679.486358 2200.605702 8166.500923 10234.75893 0.772294608 0.315705854 0.806493069 0.824755837 0.452276115 0.393252077 0.457215103 0.215012949 0.797918249 1 13.3211895 -5.972709096 0.18585186 1.128112517 6.39E-17 0.532900931 0.17234271 3.372076633 0.2506823 0.388370242 1.078407502 1.06E-06 5.972709096 -1.128112517 EELRHT(ph)PELPLAPRPLK ddPTM_HeLa_CUDC101_4h_R1 1 EELRHTPELPLAPRPLK 17 2 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 EELRHT(1)PELPLAPRPLK 79.804 0.011356 56267000 2474 2308.3 2102.6 1903.3 1562.5 1712.3 1597.7 1071.7 2188.9 2382.4 TRUE FALSE FALSE 2184.00147 2379.415987 2216.272916 1980.924801 1447.237488 1679.64073 1659.323824 1193.697996 2098.672616 2368.229379 0.922208587 1.004723617 0.935835412 0.836458165 0.611105284 0.70923904 0.700660096 0.504046613 0.886177933 1 11.20959311 -5.972699086 2.354351385 0.964857682 0.638835695 0.843980405 0.064204234 0.075202912 0.838995401 0.00920163 0.017742607 1.06E-06 5.972699086 -0.326021987 S(ph)PTEDFR ddPTM_HeLa_CUDC101_4h_R1 2 SPTEDFR 7 0 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 S(0.984)PT(0.016)EDFR;S(0.998)PT(0.002)EDFR ; 112.41 0.013571 317420000 7328.4 7327.3 6974.3 6260.9 6225 6370.8 5806.2 5067.3 7700.6 7323.7 TRUE FALSE FALSE 6469.376061 7553.045428 7351.351754 6516.246564 5765.794152 6249.287604 6030.147079 5644.140949 7383.178009 7280.138307 0.888633675 1.03748653 1.009781881 0.895071809 0.791989645 0.858402319 0.82830117 0.775279358 1.014153536 1 12.82975014 -5.971599852 4.504805884 0.958491519 0.81875318 0.736670613 0.047932645 0.108631967 5.265340511 0.008345701 0.015156146 1.07E-06 5.971599852 -0.139738339 RLS(ph)STSLASGHSVR ddPTM_HeLa_CUDC101_4h_R1 2 RLSSTSLASGHSVR 14 1 Q9BZL6-2;Q9BZL6;Q9BZL6-3;M0QZ82 Q9BZL6-2 PRKD2 Serine/threonine-protein kinase D2 1 0 RLS(0.966)S(0.032)T(0.002)SLASGHSVR;RLS(0.926)S(0.064)T(0.01)SLASGHSVR ; 144.08 0.00021466 17399800 753.23 473.86 719.73 663.98 1309.52 898.32 682.9 711.23 728.09 659.79 TRUE FALSE FALSE 664.9375212 488.4590649 758.6407809 691.0599744 1212.919319 881.1860427 709.2396818 792.1935483 698.077822 655.8655397 1.013832075 0.744754885 1.156701694 1.053661052 1.849341435 1.343546793 1.081379702 1.207859691 1.064361183 1 9.357256265 -5.970321753 24.99999611 0.99800997 1.360894614 0.425764316 0.208424447 154.3297654 130001.7099 0.030312196 0.05494502 1.07E-06 5.970321753 0.362884645 ALPASET(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 ALPASETPK 9 0 J3QSV6;O76021-2;O76021 J3QSV6 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 ALPAS(0.041)ET(0.959)PK;ALPAS(0.001)ET(0.999)PK ; 118.9 0.028774 173378000 16571.2 14595.6 14318.2 14667.2 13086.7 14327.4 11389.2 3681.1 16144.3 15213.3 TRUE FALSE FALSE 14628.74906 15045.27314 15092.2852 15265.39181 12121.32021 14054.12872 11828.48526 4100.141544 15478.82512 15122.81062 0.967330044 0.994872813 0.997981499 1.009428221 0.801525624 0.929333116 0.782161832 0.271122984 1.023541557 1 13.88443867 -4.221210645 1.615833487 0.975654837 3.13E-23 0.925028691 0.059696728 0.204926852 0.464582167 0.008364473 0.321802958 6.01E-05 4.221210645 -0.975654837 down MS(ph)SHTETSSFLQTLTGR ddPTM_HeLa_CUDC101_4h_R1 1 MSSHTETSSFLQTLTGR 17 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 MS(0.966)S(0.034)HTETSSFLQTLTGR 130.64 6.49E-05 0 744.24 1534.8 1247.3 1396 2697 2170.9 1975.3 1570.5 1927.7 1436.7 TRUE FALSE FALSE 657.0013154 1582.085369 1314.732811 1452.934914 2498.047683 2129.493699 2051.487983 1749.279372 1848.23939 1428.154445 0.4600352 1.107783108 0.920581675 1.017351393 1.749143934 1.491080819 1.436460875 1.224853081 1.29414532 1 10.47993629 -5.970039429 3.792573404 0.787260875 1.473038966 0.408731864 0.260788993 0.115770059 3.617378603 0.03920193 0.071834499 1.07E-06 5.970039429 0.685778091 GRPPAEKLS(ph)PNPPNLTK ddPTM_HeLa_CUDC101_4h_R1 2 GRPPAEKLSPNPPNLTK 17 2 P51532-5;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;P51532;A0A2R8Y4C5;P51532-4;P51532-2;P51532-3;A0A2R8Y6V2;A0A2R8Y6N0;A0A2R8YG32;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y526;A0A2R8YDA1;A0A2R8Y7Y7;A0A2R8YF58;K7EQF0;A0A2R8Y5K3;A0A2R8Y523;A0A2R8YFK5;K7EP28;A0A2R8YF38 P51532-5 SMARCA4 Transcription activator BRG1 1 0 GRPPAEKLS(0.998)PNPPNLT(0.002)K;GRPPAEKLS(0.989)PNPPNLT(0.011)K ; 65.652 0.029196 142663000 8809.5 6564.1 7252.2 6834.5 5797.3 6999.9 6350.6 5253.5 6804.2 7479 TRUE FALSE FALSE 7776.863764 6766.332141 7644.275869 7113.240451 5369.644729 6866.38857 6595.544769 5851.537205 6523.727996 7434.514575 1.046048627 0.910124269 1.028214524 0.956786133 0.722258955 0.923582636 0.88715204 0.787077239 0.877492125 1 12.86002283 -5.96952361 10.63427057 1.011727529 0.84049907 0.41056835 0.074729111 0.230337385 78.48351283 0.008820779 0.015969904 1.07E-06 5.96952361 -0.17122846 KPGPPLS(ph)PEIR ddPTM_HeLa_CUDC101_4h_R1 1 KPGPPLSPEIR 11 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPGPPLS(1)PEIR 77.372 0.023965 69232000 2800.1 2400.1 2269.3 2258.2 1927.8 1971.2 1994.2 2413.8 2169.7 2319 TRUE FALSE FALSE 2471.876523 2474.044236 2391.985222 2350.299157 1785.590035 1933.602644 2071.116962 2688.577235 2080.264048 2305.206485 1.072301566 1.073241921 1.03764467 1.019561229 0.774590062 0.838798024 0.89845182 1.166306469 0.902419832 1 11.17068027 -5.969410612 24.97799137 1.038359496 0.910364938 0.155010499 0.105605413 198.2682341 161896.5652 0.014176871 0.025697539 1.07E-06 5.969410612 -0.127994558 KQSFDDNDSEELEDKDS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 KQSFDDNDSEELEDKDSK 18 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 KQS(0.003)FDDNDS(0.009)EELEDKDS(0.987)K 52.112 0.028568 302540000 5696.4 4885.7 4526.4 4455.3 4149 4351.4 4068 4788.1 4372.7 4287.6 TRUE FALSE FALSE 5028.676627 5036.222626 4771.110876 4637.006391 3842.936536 4268.404295 4224.904123 5333.15795 4192.455455 4262.097165 1.179859687 1.181630177 1.119427993 1.087963557 0.901653901 1.001479819 0.991273535 1.251299007 0.983660225 1 12.05734777 -5.969230359 24.99250134 1.098471154 1.026218099 0.061613854 0.102404874 395.4367968 321190.0852 0.015950911 0.028913291 1.07E-06 5.969230359 -0.072253055 AEDGATPSPSNET(ph)PK ddPTM_HeLa_CUDC101_4h_R1 12 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGATPS(0.003)PS(0.006)NET(0.991)PK;AEDGATPSPSNET(1)PK;AEDGATPSPSNET(1)PK;AEDGATPS(0.002)PS(0.003)NET(0.996)PK;AEDGATPSPSNET(1)PK;AEDGATPS(0.011)PS(0.122)NET(0.867)PK;AEDGATPSPSNET(1)PK;AEDGATPS(0.005)PS(0.008)NET(0.987)PK;AEDGATPS(0.002)PS(0.009)NET(0.989)PK;AEDGATPS(0.063)PS(0.302)NET(0.634)PK;AEDGAT(0.012)PS(0.002)PS(0.013)NET(0.972)PK;AEDGATPSPSNET(1)PK ;;;;;;;;;;; 281.68 1.82E-102 12655371100 59447.1 54206 53399.9 51002.9 46570.7 48296.1 47147.1 56272.4 55139.9 53994.2 TRUE FALSE FALSE 52478.80105 55876.02261 56286.86012 53083.01872 43135.27224 47374.93236 48965.57944 62678.22256 52867.00998 53673.0401 0.977749741 1.041044489 1.048698937 0.989007118 0.803667394 0.882657891 0.912293758 1.167778506 0.984982589 1 15.71190999 -5.96903128 24.99870278 0.998858235 0.93042618 0.105709553 0.089396696 335.5330829 270849.0267 0.01284575 0.023284729 1.07E-06 5.96903128 -0.068432055 NSSLLSFDNEDENE ddPTM_HeLa_CUDC101_4h_R1 4 NSSLLSFDNEDENE 14 0 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 0 0 ;;; ;;; 234.72 1.17E-42 115628000 30139.8 27012.5 24582.1 24915.5 28953.6 26890.3 25247.8 25697 30224.3 29330.6 FALSE FALSE TRUE 26606.85833 27844.72311 25911.08268 25931.66178 26817.75061 26377.41233 26221.6161 28622.24261 28978.44156 29156.14029 0.912564491 0.955020892 0.888700714 0.889406538 0.919797694 0.904694931 0.899351418 0.981688328 0.993905273 1 14.83151213 -9.253106603 0.639346972 1.010664748 0.915182937 0.555358758 0.027830341 0.589755463 0.359486256 0.032204268 0.005903949 5.58E-10 9.253106603 -0.095481811 NSSNKPAVTTK(ac)SPAVKPAAAPK ddPTM_HeLa_CUDC101_4h_R1 2 NSSNKPAVTTKSPAVKPAAAPK 22 3 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ; NSSNK(0.001)PAVTTK(0.999)SPAVKPAAAPK;NSSNKPAVTTK(1)SPAVKPAAAPK 208.87 2.73E-29 28970500 705.74 770.42 1095.68 723.28 941.15 822.74 710.26 815.04 475.64 584.74 FALSE TRUE FALSE 623.014227 794.155727 1154.915775 752.7784847 871.7232395 807.0476053 737.6549661 907.8208591 456.0339179 581.2619405 1.071830415 1.366261356 1.986911054 1.295076165 1.499708099 1.388440476 1.269057743 1.561810254 0.784558365 1 9.183044638 -7.213384668 3.961265844 1.032155062 1.488003891 0.581281301 0.204237833 0.121721868 4.034670326 0.031234154 0.037859639 6.12E-08 7.213384668 0.455848828 APQTSSS(ph)PPPVR ddPTM_HeLa_CUDC101_4h_R1 7 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 APQT(0.111)S(0.048)S(0.179)S(0.662)PPPVR;APQTSSS(0.999)PPPVR;APQTS(0.009)S(0.03)S(0.961)PPPVR;APQT(0.265)S(0.118)S(0.118)S(0.498)PPPVR;APQT(0.002)S(0.003)S(0.029)S(0.966)PPPVR;APQT(0.196)S(0.08)S(0.034)S(0.689)PPPVR;APQT(0.119)S(0.047)S(0.16)S(0.674)PPPVR ;;;;;; 185.2 1.09E-10 3861496000 23688.5 19303.8 19388.6 19347.6 19857.1 18515 18002.1 20065.5 19420 20707.9 TRUE FALSE FALSE 20911.76994 19898.5272 20436.80636 20136.67876 18392.28129 18161.85722 18696.44703 22349.67541 18619.49938 20584.72849 1.015887577 0.966664545 0.992813987 0.978233877 0.893491566 0.882297633 0.908267847 1.085740598 0.904529753 1 14.3292868 -5.967913098 6.462558303 1.002300049 0.935418355 0 0.062475525 0.191169792 24.39793672 0.007801153 0.014113729 1.08E-06 5.967913098 -0.066881695 NSSPEDLFDEI ddPTM_HeLa_CUDC101_4h_R1 2 NSSPEDLFDEI 11 0 Q13426-2;Q13426 Q13426-2 XRCC4 DNA repair protein XRCC4 0 0 ; ; 122.33 0.020703 2231100 3757.1 4267 3250.1 3034.8 4417.1 3835.3 3729.6 3310 4134 4279.5 FALSE FALSE TRUE 3316.698433 4398.461212 3425.810237 3158.572262 4091.259333 3762.148043 3873.451921 3686.797021 3963.59477 4254.045344 0.779657518 1.033947891 0.80530647 0.742486741 0.961733833 0.884369521 0.910533765 0.866656729 0.931723677 1 12.0546197 -9.602303952 1.395305176 1.000126319 0.86288657 0.139500212 0.083891682 0.459225092 1.601940219 0.05882444 0.013529605 2.50E-10 9.602303952 -0.137239749 NGS(ph)PPPGAPSSR ddPTM_HeLa_CUDC101_4h_R1 2 NGSPPPGAPSSR 12 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 0 NGS(0.978)PPPGAPS(0.005)S(0.017)R;NGS(0.999)PPPGAPS(0.001)SR ; 116.79 0.0040486 62180000 4272 4078.2 4293.1 3778.68 3717.69 3666.1 3604.6 3663.57 3720.79 4017.4 TRUE FALSE FALSE 3771.242636 4203.844508 4525.197972 3932.790903 3443.443415 3596.175251 3743.630629 4080.616 3567.417461 3993.504326 0.944344197 1.052670578 1.133139619 0.984796956 0.862261096 0.900506161 0.937429967 1.021813342 0.89330502 1 11.96343956 -5.96791172 24.51481239 0.99404856 0.928189057 0.192769517 0.07028642 220.953416 168802.8033 0.010336325 0.018736075 1.08E-06 5.96791172 -0.065859502 NLT(ph)LHQS(ph)IHTDEK ddPTM_HeLa_CUDC101_4h_R1 1 NLTLHQSIHTDEK 13 0 Q86YE8-2;Q86YE8-4;Q86YE8-3;Q86YE8 Q86YE8-2 ZNF573 Zinc finger protein 573 2 0 NLT(1)LHQS(0.5)IHT(0.5)DEK 98.048 0.040475 86977000 2058.2 1996.4 1681.3 2011 2604 2288 2071.3 2152.2 2561.5 2150.5 TRUE FALSE FALSE 1816.940916 2057.906718 1772.196164 2093.017272 2411.908108 2244.360212 2151.190735 2397.197749 2455.913886 2137.70873 0.849947839 0.96266937 0.829016666 0.979093757 1.128267885 1.049890558 1.006306755 1.121386517 1.148853373 1 11.06184958 -5.967538043 6.929094923 0.922707393 1.068345591 0.234054142 0.091324068 0.119111373 18.04816856 0.010201714 0.018457458 1.08E-06 5.967538043 0.145638198 KTS(ph)QSEEEEAPR ddPTM_HeLa_CUDC101_4h_R1 1 KTSQSEEEEAPR 12 1 Q7RTP6;A0A5F9ZHV5;J3KSK6;Q7RTP6-2;Q7RTP6-4;Q7RTP6-3;Q7RTP6-5 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 KT(0.022)S(0.976)QS(0.002)EEEEAPR 81.185 0.017599 6803100 731.93 853.21 1016.3 917.1 1172.4 1348.1 1354.3 1032.6 1332.7 899.08 TRUE FALSE FALSE 646.1342749 879.4963888 1071.244252 954.503302 1085.914388 1322.387239 1406.535805 1150.14701 1277.765542 893.7322322 0.722961813 0.984071467 1.198618796 1.067996954 1.21503326 1.479623528 1.573777642 1.286903357 1.429696162 1 9.803698845 -5.967199692 0.894926194 0.875015917 1.469158839 0.248144034 0.214136643 0.232704943 0.359998431 0.026647788 0.075119173 1.08E-06 5.967199692 0.594142922 KAAVLS(ph)DS(ph)EDEEK ddPTM_HeLa_CUDC101_4h_R1 1 KAAVLSDSEDEEK 13 1 Q96ST2-3;Q96ST2;Q96ST2-2 Q96ST2-3 IWS1 Protein IWS1 homolog 2 0 KAAVLS(1)DS(1)EDEEK 103.14 0.014784 11415000 5643.5 4362.9 5209.6 4551 4046.9 4455.2 3918.3 4000.6 4643.9 5238.4 TRUE FALSE FALSE 4981.977485 4497.315778 5491.246734 4736.609451 3748.36825 4370.224483 4069.430144 4456.012133 4452.476476 5207.241764 0.956740192 0.863665638 1.054540385 0.909619654 0.719837568 0.839258994 0.781494374 0.855733675 0.855054687 1 12.34630367 -5.966172112 7.003600501 0.97403196 0.801602062 0.497122648 0.067272781 0.078988067 11.93527188 0.007850405 0.014210323 1.08E-06 5.966172112 -0.172429897 LTLT(ph)SDESTLIEDGGAR ddPTM_HeLa_CUDC101_4h_R1 1 LTLTSDESTLIEDGGAR 17 0 Q9NRX5 Q9NRX5 SERINC1 Serine incorporator 1 1 0 LT(0.001)LT(0.974)S(0.007)DES(0.009)T(0.009)LIEDGGAR 118.2 0.0015837 8123400 1269.3 942.74 925.88 981.23 846.43 752.88 909.21 549.7 781.8 1108.6 TRUE FALSE FALSE 1120.514578 971.784702 975.9358734 1021.248801 783.9905452 738.5200684 944.2785343 612.275626 749.5738731 1102.005998 1.016795353 0.881832498 0.885599421 0.926718006 0.711421305 0.670159754 0.856872409 0.555600992 0.680190375 1 10.10591636 -5.966099687 0.621222852 1.012135273 0.656527456 0.202370497 0.131160131 0.330665912 0.228628369 0.016174719 0.057520878 1.08E-06 5.966099687 -0.355607817 NAVASVQNGPGGGPS(ph)SSSIGSASKSDESSTEETDKSR ddPTM_HeLa_CUDC101_4h_R1 1 NAVASVQNGPGGGPSSSSIGSASKSDESSTEETDKSR 37 2 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y815 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 NAVASVQNGPGGGPS(0.149)S(0.149)S(0.149)S(0.149)IGS(0.116)AS(0.116)KS(0.116)DES(0.012)S(0.01)T(0.01)EET(0.01)DKS(0.012)R 66.677 2.35E-05 10102000 3607.2 3321.9 2969.5 3120.2 4280.2 3277.4 3497.3 3002.4 3390.7 3219 TRUE FALSE FALSE 3184.369484 3424.243802 3130.040152 3247.455243 3964.458173 3214.889056 3632.192033 3344.18108 3250.933911 3199.853245 0.995161103 1.070125265 0.978182408 1.014876307 1.238949999 1.004698906 1.135112068 1.045104517 1.01596344 1 11.64379002 -5.96550664 24.99939417 1.002630526 1.104077161 0.351938524 0.061564102 129.1151298 93576.89688 0.008050625 0.014592966 1.08E-06 5.96550664 0.101446635 AHLS(ph)ENELEALEKNDMEQMK ddPTM_HeLa_CUDC101_4h_R1 2 AHLSENELEALEKNDMEQMK 20 1 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 0 AHLS(1)ENELEALEKNDMEQMK;AHLS(1)ENELEALEKNDMEQMK ; 103.92 0.00018339 23531500 5845.6 5169.3 4984.9 5091.1 6684.6 4955.6 5438.3 4995.5 5928.7 5382.7 TRUE FALSE FALSE 5160.387629 5328.560006 5254.398772 5298.737064 6191.490376 4861.080187 5648.057053 5564.167527 5684.316477 5350.683461 0.964435229 0.995865303 0.982005161 0.990291633 1.157140096 0.908497059 1.055576749 1.039898467 1.062353346 1 12.38550747 -5.965260737 24.99998083 0.983947897 1.037177641 0.06532233 0.061828182 234.3947374 168680.286 0.007713436 0.013981748 1.08E-06 5.965260737 0.053229744 S(ph)SPQLDPLR ddPTM_HeLa_CUDC101_4h_R1 2 SSPQLDPLR 9 0 Q8ND56-3;Q8ND56-2;Q8ND56 Q8ND56-3 LSM14A Protein LSM14 homolog A 1 0 S(0.5)S(0.5)PQLDPLR;S(0.604)S(0.396)PQLDPLR ; 97.452 0.020131 58566100 9403.3 7217.1 5758.4 7154.8 6917.7 6261.3 5650.6 5547.4 5873.3 6923.2 TRUE FALSE FALSE 8301.059428 7439.450297 6069.716522 7446.60367 6407.395053 6141.876135 5868.545535 6178.893593 5631.200088 6882.020498 1.206195104 1.080997986 0.881967225 1.082037415 0.931033997 0.892452462 0.852735841 0.897831326 0.818248084 1 12.74861647 -5.964927431 0.899008623 1.094164844 0.870756976 0.022906222 0.116335137 0.406137887 0.634285245 0.017538619 0.0493919 1.08E-06 5.964927431 -0.223407868 QSHSGS(ph)ISPY(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 QSHSGSISPYPK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 QS(0.056)HS(0.102)GS(0.843)IS(0.315)PY(0.684)PK 126.1 0.027075 36164000 6268.5 5617.6 5262.9 5191.3 5259.2 5282.8 4685.6 4427.9 4917.1 5755.4 TRUE FALSE FALSE 5533.715932 5790.671598 5547.428293 5403.023653 4871.239294 5182.039392 4866.325162 4931.954238 4714.415057 5721.166625 0.967235582 1.012148741 0.969632359 0.944391941 0.851441605 0.905766207 0.850582666 0.862053941 0.824030371 1 12.48209365 -5.96361518 2.521680192 0.985719544 0.868285546 0.292672556 0.054798802 0.068448246 0.879644927 0.003135126 0.006005445 1.09E-06 5.96361518 -0.117433998 INPDNYGMDLNS(ph)DDS(ph)TDDEAHPR ddPTM_HeLa_CUDC101_4h_R1 1 INPDNYGMDLNSDDSTDDEAHPR 23 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 2 0 INPDNYGMDLNS(0.956)DDS(0.627)T(0.417)DDEAHPR 91.599 0.00066637 2001500 895.7 620.43 532.56 630.24 880.43 734.65 713.19 521.93 807.32 536.37 TRUE FALSE FALSE 790.7074038 639.5447129 561.3518045 655.9439113 815.482433 720.6377753 740.6979772 581.3444015 774.0419279 533.1796474 1.483003726 1.199491984 1.05283802 1.230249344 1.529470296 1.351585303 1.389209023 1.090334945 1.451746952 1 9.0584779 -5.963241629 24.99536777 1.215948517 1.348894617 0.071889303 0.173643938 351.3483463 238912.311 0.030739758 0.055720462 1.09E-06 5.963241629 0.1329461 ASLGSLEGEAEAEASS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ASLGSLEGEAEAEAS(0.078)S(0.922)PK;ASLGSLEGEAEAEAS(0.047)S(0.953)PK;ASLGSLEGEAEAEAS(0.089)S(0.911)PK ;; 233.14 1.14E-43 450181000 7543.8 6896.1 5826.1 6096.9 5733.6 6103 6132.7 5424.2 6458.2 6082.9 TRUE FALSE FALSE 6659.5272 7108.560667 6141.076589 6345.557935 5310.643751 5986.595443 6369.240293 6041.669003 6191.990262 6046.71864 1.101345638 1.175606323 1.015604819 1.04942173 0.878268705 0.990056889 1.053338293 0.999164896 1.024024869 1 12.56193674 -5.963188894 24.99978005 1.057358495 0.983348211 0.28957199 0.061884895 209.7242898 142430.6988 0.010211413 0.018509727 1.09E-06 5.963188894 -0.074010283 KGS(ph)SSSVCSVASSSDISLGSTK ddPTM_HeLa_CUDC101_4h_R1 1 KGSSSSVCSVASSSDISLGSTK 22 1 A0A087X2H1;Q9ULT8;H0YJP0 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 1 0 KGS(0.237)S(0.237)S(0.237)S(0.237)VCS(0.05)VASSSDISLGSTK 77.681 0.00088099 10465000 1781.4 1785.4 1735.6 2241 3262 3168.2 3039.7 3149.9 1926.9 1242.4 TRUE FALSE FALSE 1572.586992 1840.406058 1829.431786 2332.397666 3021.368759 3107.771864 3156.942247 3508.471884 1847.472366 1235.01015 1.273339327 1.490195087 1.48130911 1.888565586 2.446432331 2.516393784 2.556207533 2.840844575 1.495916748 1 10.27030718 -5.963073308 0.601612355 1.077753193 2.887545392 0.926606775 0.164871046 0.102268305 0.065731174 0.024672343 0.089563785 1.09E-06 5.963073308 1.809792199 up QEKEPS(ph)KS(ph)AESPTSPVT(ph)SETGSTFK ddPTM_HeLa_CUDC101_4h_R1 1 QEKEPSKSAESPTSPVTSETGSTFK 25 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 3 0 QEKEPS(0.971)KS(0.928)AES(0.093)PT(0.091)S(0.091)PVT(0.508)S(0.08)ET(0.08)GS(0.08)T(0.08)FK 42.325 0.0031807 0 850.64 620.21 916.86 728.59 606.78 779.62 560.52 726.3 707.78 773.57 TRUE FALSE FALSE 750.9292687 639.317935 966.4282249 758.3050494 562.0190483 764.7500474 582.1394442 808.9790562 678.6050088 768.9687712 0.976540656 0.831396487 1.25678475 0.986132438 0.730873696 0.99451379 0.757039123 1.052031092 0.882487084 1 9.5867812 -5.96212362 24.99372763 0.998186799 0.879495671 0.121784468 0.137343333 220.4434665 145464.5099 0.017835947 0.032330357 1.09E-06 5.96212362 -0.118691128 SIQDLTVTGTEPGQVSS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SIQDLTVTGTEPGQVSSR 18 0 Q9UG54;O43318-4;O43318-3;O43318-2;O43318 Q9UG54 DKFZp586F0420;MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 0 SIQDLTVTGT(0.001)EPGQVS(0.232)S(0.766)R 214.42 2.35E-24 47874000 2920.4 2239 2629.4 2135.2 2153.7 1860.8 2154.2 1750.2 2289.3 2235 TRUE FALSE FALSE 2578.075139 2307.980936 2771.553318 2222.282685 1994.825842 1825.30834 2237.288216 1949.435693 2194.934085 2221.706121 1.160403311 1.038832686 1.247488717 1.000259514 0.897880158 0.821579561 1.007013572 0.877449846 0.987949785 1 11.11745228 -5.961237824 4.913163749 1.087553936 0.90546455 0.523954988 0.083314566 0.125497505 7.19364677 0.012932997 0.023542685 1.09E-06 5.961237824 -0.182089387 SPQQTVPY(ph)VVPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SPQQTVPYVVPLSPK 15 0 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 2 0 S(0.327)PQQT(0.034)VPY(0.64)VVPLS(0.999)PK 137.39 0.0058499 28437000 4110.4 3299.7 3581.1 3393.7 3276.8 3685.4 3483.8 2938.3 3795.8 3469.3 TRUE FALSE FALSE 3628.585143 3401.359846 3774.705098 3532.109755 3035.076992 3615.107135 3618.171333 3272.784195 3639.335517 3448.664449 1.052171122 0.986283211 1.094541134 1.024196412 0.880073152 1.04826294 1.049151457 0.949000473 1.055288379 1 11.75182205 -5.959955188 24.99999767 1.027969162 0.986321793 0.185272028 0.05361886 255.5676105 159549.7576 0.007756722 0.014060227 1.10E-06 5.959955188 -0.041647369 S(ph)GGDGGDEVEGSGVGAGEGETVQHFPLAR ddPTM_HeLa_CUDC101_4h_R1 2 SGGDGGDEVEGSGVGAGEGETVQHFPLAR 29 0 Q96DT7-3;Q96DT7-2;Q96DT7 Q96DT7-3 ZBTB10 Zinc finger and BTB domain-containing protein 10 1 0 S(1)GGDGGDEVEGSGVGAGEGETVQHFPLAR;S(1)GGDGGDEVEGSGVGAGEGETVQHFPLAR ; 172.36 8.94E-19 6421300 2234.31 1784.85 1551.31 1871.33 1709.88 1772.31 1474.08 1399.89 2063.13 2013.73 TRUE FALSE FALSE 1972.407569 1839.839113 1635.178511 1947.650926 1583.745559 1738.50614 1530.935759 1559.247819 1978.086908 2001.752244 0.985340506 0.9191143 0.816873574 0.97297302 0.791179609 0.868492165 0.764797823 0.778941462 0.98817769 1 10.96704771 -5.959586105 0.403080041 1.008108065 0.738533035 0.688271634 0.050597447 0.636782268 0.171435201 0.017165522 0.070068315 1.10E-06 5.959586105 -0.26957503 NSSTYWEGK ddPTM_HeLa_CUDC101_4h_R1 1 NSSTYWEGK 9 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 0 0 119.53 0.032187 14363000 1212.3 1166 1068.3 1125.6 1319.4 1023.7 1058.5 1265.3 959.31 1183.7 FALSE FALSE TRUE 1070.196032 1201.923078 1126.055529 1171.506833 1222.070491 1004.174628 1099.3267 1409.336637 919.7668358 1176.6593 0.909520735 1.021470767 0.956993694 0.995621106 1.038593322 0.853411543 0.934277832 1.197744018 0.781676426 1 10.20048093 -4.257545615 24.90758938 0.960642806 1.197744115 0.483171452 0.077070228 186.4190394 1192431.699 0.007635645 0.077066202 5.53E-05 4.257545615 0.237101308 NSSYFVEWIPNNVK ddPTM_HeLa_CUDC101_4h_R1 2 NSSYFVEWIPNNVK 14 0 Q5JP53;P07437;Q5ST81;P68371;Q9BVA1;Q13885;P04350;K7ESM5;Q9BUF5;A0A0B4J269;Q13509;Q13509-2 Q5JP53;P68371;Q9BVA1;P04350;A0A0B4J269 TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB4A;TUBB6;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-4A chain;Tubulin beta-6 chain;Tubulin beta-3 chain 0 0 ; ; 202.29 4.15E-16 24347000 5795.3 4990.7 4413.2 4193.1 4871.8 4741 4334.6 4113.5 5795.4 4728.3 FALSE FALSE TRUE 5115.983719 5144.457552 4651.790941 4364.112742 4512.41702 4650.573324 4501.786974 4581.764213 5556.511159 4700.175861 1.088466447 1.094524482 0.989705721 0.928499884 0.960052805 0.989446664 0.957791178 0.974806975 1.182192182 1 12.19849902 -6.565866142 7.776181254 1.046795645 0.962845214 0.529619649 0.051578968 0.139883095 21.67382054 0.006238482 0.008851575 2.72E-07 6.565866142 -0.083950431 TPTS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 2 TPTSPLK 7 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 1 0 TPT(0.006)S(0.994)PLK;T(0.003)PT(0.001)S(0.996)PLK ; 128.36 0.0050793 253019000 19560.8 16684 17515.8 17164.3 15580.3 16028.6 16185.8 16090.8 15958.6 18936.8 TRUE FALSE FALSE 17267.91268 17198.01426 18462.75713 17864.33434 14430.97231 15722.88116 16810.09173 17922.51163 15300.77975 18824.16307 0.917326981 0.913613753 0.980800956 0.949010815 0.766619597 0.835249944 0.893006062 0.95210138 0.812826562 1 14.2002981 -5.959191257 24.99803743 0.957359917 0.86155096 0.117040716 0.067576935 114.6070684 70203.88731 0.008211757 0.014885071 1.10E-06 5.959191257 -0.095808957 LEPAS(ph)PPEDTSAEVSR ddPTM_HeLa_CUDC101_4h_R1 1 LEPASPPEDTSAEVSR 16 0 E9PFE2;Q9UHL9-2;Q9UHL9;Q9UHL9-3 E9PFE2 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 1 0 LEPAS(0.999)PPEDTS(0.001)AEVSR 144.97 0.00025782 50399000 2004.2 1325.4 1504.8 1311.5 1363.8 1171.6 1199.4 1009.9 1592.1 1414.8 TRUE FALSE FALSE 1769.270714 1366.234003 1586.15404 1364.988639 1263.195191 1149.253682 1245.66126 1124.862934 1526.472964 1406.384707 1.258027555 0.971451123 1.127823726 0.970565616 0.898186097 0.817168785 0.885718718 0.799825914 1.085387915 1 10.45777557 -5.959189892 1.413823498 1.115064382 0.835617123 0.673538008 0.077789894 0.22048308 0.878818303 0.016903985 0.037547659 1.10E-06 5.959189892 -0.279447258 TDNSVASSPSSAISTAT(ph)PSPK ddPTM_HeLa_CUDC101_4h_R1 1 TDNSVASSPSSAISTATPSPK 21 0 H0Y6I7;F5H5V6;F5H6S1;F8W8R6;A0A087X0R0;O15550 H0Y6I7 KDM6A Lysine-specific demethylase 6A 1 0 TDNSVASSPSSAIST(0.006)AT(0.497)PS(0.497)PK 175.77 1.54E-18 0 2676.3 2054.1 2319.1 1987.5 2426.5 1981.2 1740.4 2051 2173.1 2373 TRUE FALSE FALSE 2362.588171 2117.384386 2444.477561 2068.558841 2247.501929 1943.411911 1807.527811 2284.47755 2083.523898 2358.88529 1.001569759 0.897620751 1.03628505 0.876922184 0.952781358 0.823868765 0.766263548 0.968456397 0.883266307 1 11.20388955 -5.95917102 0.947739995 0.997472257 0.848012052 0.165170201 0.074551486 0.347699009 0.607249231 0.010489906 0.028702018 1.10E-06 5.95917102 -0.149460206 QEAGDSPPPAPGT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 QEAGDSPPPAPGTPK 15 0 J3KR72;P49848-4;P49848-2;P49848;P49848-3 J3KR72 TAF6 Transcription initiation factor TFIID subunit 6 1 0 QEAGDSPPPAPGT(1)PK;QEAGDSPPPAPGT(1)PK ; 185.2 4.25E-10 23605000 7962.7 6705.1 6374.7 6169.8 5990.4 5706 5784.4 5298 7039.5 6598.7 TRUE FALSE FALSE 7029.324377 6911.676183 6719.335564 6421.431112 5548.500127 5597.167557 6007.506246 5901.102905 6749.32883 6559.450639 1.071633093 1.053697415 1.024374743 0.978958676 0.845878783 0.85329822 0.915855089 0.899633709 1.02894727 1 12.67935928 -5.958728257 3.446306992 1.035298143 0.879859132 0.886269217 0.026463734 0.072413032 1.794607838 0.005236024 0.009707802 1.10E-06 5.958728257 -0.155439011 SVT(ph)PPPPPR ddPTM_HeLa_CUDC101_4h_R1 1 SVTPPPPPR 9 0 O95835;O95835-2;H0YG09 O95835 LATS1 Serine/threonine-protein kinase LATS1 1 0 S(0.004)VT(0.996)PPPPPR 120.27 0.027184 32556000 4441.8 4012.6 3928.2 3681 3574.1 3826.2 3089.3 3626.9 3759.2 3840.2 TRUE FALSE FALSE 3921.138937 4136.22345 4140.570374 3831.127091 3310.445764 3753.22161 3208.455336 4039.771636 3604.244185 3817.35832 1.027186502 1.083530312 1.084669037 1.003606885 0.867208547 0.983198667 0.840491006 1.058263673 0.944172352 1 11.8983589 -5.958344156 12.1899768 1.025341928 0.933827576 0.289232187 0.067239445 0.763940569 221.7626203 0.008603325 0.01559468 1.10E-06 5.958344156 -0.091514352 NSTFSEIFK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 NSTFSEIFKK 10 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 1 ; NSTFSEIFK(1)K;NSTFSEIFK(1)K 203.02 1.99E-08 13169100 3805.8 1320.29 1076.8 935.54 2666.7 2403.9 2975.6 2197.1 2473.2 1677.59 FALSE TRUE FALSE 3359.689893 1360.96657 1135.015065 973.6953649 2469.982854 2358.049613 3090.369889 2447.208983 2371.253649 1667.61162 2.014671673 0.816117226 0.680623145 0.583886172 1.481149942 1.414028053 1.853171237 1.467493362 1.421945986 1 10.70356761 -9.912132391 2.121168845 0.995981809 1.4222791 0 0.482410963 0.759353025 6.193555128 0.432225113 0.083183288 1.22E-10 9.912132391 0.426297291 ASVLDTSMS(ph)AGSGSPSKTVTPK ddPTM_HeLa_CUDC101_4h_R1 1 ASVLDTSMSAGSGSPSKTVTPK 22 1 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 ASVLDT(0.001)S(0.005)MS(0.461)AGS(0.367)GS(0.064)PS(0.094)KT(0.007)VT(0.001)PK 75.319 0.0012325 62965000 1644.4 2025 1651 2075.8 4333.7 2584.1 2497 3745.6 2645.8 1622.3 TRUE FALSE FALSE 1451.645925 2087.38785 1740.258054 2160.460096 4014.011585 2534.812598 2593.310126 4171.983964 2536.739004 1612.650487 0.900161527 1.294383294 1.079129091 1.339695187 2.489077216 1.571830113 1.608104265 2.58703544 1.573024672 1 10.65521808 -5.957053088 5.33440752 0.998863805 1.995907337 0.548789254 0.368985124 0.079892149 5.410580582 0.045902367 0.083547876 1.10E-06 5.957053088 0.997043531 APLKPY(ph)PVSPSDKVLIQEK ddPTM_HeLa_CUDC101_4h_R1 1 APLKPYPVSPSDKVLIQEK 19 2 J3KR24;A0A0A0MSX9;P41252;Q5TCC6 J3KR24 IARS "Isoleucine--tRNA ligase, cytoplasmic" 1 0 APLKPY(0.378)PVS(0.378)PS(0.244)DKVLIQEK 73.168 0.010973 46348000 2728.8 2716.1 3073.7 2670.3 3516.5 3080.5 3142 3298.1 3101.2 2581.7 TRUE FALSE FALSE 2408.934201 2799.779822 3239.873519 2779.206376 3257.094801 3021.744595 3263.187992 3673.542373 2973.367223 2566.343934 0.93866382 1.090960485 1.262447125 1.082943849 1.269157558 1.177451142 1.271531828 1.431430263 1.158600445 1 11.32549881 -5.956723595 0.493543655 0.962451445 1.374141412 0.481831046 0.100115378 0.495308773 0.204440455 0.022958523 0.091254758 1.10E-06 5.956723595 0.411689968 T(ph)PSPPPPIPEDIALGK ddPTM_HeLa_CUDC101_4h_R1 1 TPSPPPPIPEDIALGK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 T(0.919)PS(0.081)PPPPIPEDIALGK 144.4 0.0012855 11209000 1589.5 1588.8 1407.3 1319.1 1280.7 1394.5 1061.9 1275.1 1284.4 1413.4 TRUE FALSE FALSE 1403.18122 1637.749045 1483.382895 1372.8986 1186.225313 1367.902236 1102.857839 1420.25223 1231.456488 1404.993034 0.998710446 1.165663463 1.055793772 0.977156873 0.844292665 0.973600725 0.78495609 1.010860692 0.876485832 1 10.45634726 -5.956575033 6.409647392 1.018304495 0.900477642 0.27685966 0.088322874 0.163245654 16.86666065 0.010965716 0.019914529 1.11E-06 5.956575033 -0.117826853 ADS(ph)PVNGLPK ddPTM_HeLa_CUDC101_4h_R1 2 ADSPVNGLPK 10 0 Q96S94;Q96S94-3;A0A0A0MSF3 Q96S94 CCNL2 Cyclin-L2 1 0 ADS(1)PVNGLPK;ADS(1)PVNGLPK ; 123.26 0.0040432 360540000 21483 18287.3 17190.1 17346.9 17045.8 16625.9 16918.7 17026.5 18187.9 17301.3 TRUE FALSE FALSE 18964.79531 18850.71004 18119.4488 18054.38156 15788.36529 16308.78866 17571.25993 18964.72794 17438.18706 17198.3911 1.102707526 1.096074041 1.053554876 1.049771543 0.918014087 0.948274089 1.021680448 1.102703609 1.01394293 1 14.06998599 -5.956429773 24.99523877 1.054283179 0.994359742 0.198835277 0.05394746 184.3635764 105764.3359 0.009080251 0.016459343 1.11E-06 5.956429773 -0.059923437 GPSS(ph)VEDIK ddPTM_HeLa_CUDC101_4h_R1 2 GPSSVEDIK 9 0 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 1 0 GPS(0.187)S(0.813)VEDIK;GPS(0.053)S(0.947)VEDIK ; 108.31 0.011061 176597000 14069.6 11726.1 11559.5 11374.3 12133.9 11792.8 10062.6 10244.5 13117.3 12682.4 TRUE FALSE FALSE 12420.38282 12087.36724 12184.44154 11838.19312 11238.80637 11567.87199 10450.71785 11410.69247 12576.59934 12606.96452 0.985200109 0.958784902 0.966484955 0.939020103 0.891476005 0.917577897 0.828963851 0.905110223 0.997591397 1 13.62193333 -5.956313959 0.638312685 0.995597095 0.862421268 0.807744833 0.022532864 0.228671982 0.167573167 0.004262604 0.015075662 1.11E-06 5.956313959 -0.133175828 SQDSYPGSPS(ph)LSPR ddPTM_HeLa_CUDC101_4h_R1 1 SQDSYPGSPSLSPR 14 0 A0A0D9SEU5;R4GMX8;Q6VN20-2;Q6VN20-3;Q6VN20 A0A0D9SEU5 RANBP10 Ran-binding protein 10 1 0 SQDSYPGS(0.021)PS(0.979)LSPR 218.12 2.22E-25 26222000 2425.2 1852.9 2156.5 1789.6 1766 1721.5 1533.7 1489.9 1769.4 1997.4 TRUE FALSE FALSE 2140.921732 1909.985653 2273.086913 1862.587623 1635.725698 1688.665256 1592.855323 1659.504194 1696.464583 1985.519376 1.078267862 0.9619577 1.1448324 0.938085846 0.823827618 0.850490444 0.802236101 0.835803575 0.854418548 1 10.95530072 -5.955734748 3.91706503 1.038803145 0.829034789 0.542841818 0.074869921 0.068179369 2.231457345 0.007144589 0.013150047 1.11E-06 5.955734748 -0.209768356 ATVTPS(ph)PVKGK ddPTM_HeLa_CUDC101_4h_R1 3 ATVTPSPVKGK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 ATVT(0.034)PS(0.966)PVKGK;AT(0.003)VT(0.002)PS(0.995)PVKGK;AT(0.001)VT(0.347)PS(0.652)PVKGK ;; 125.84 0.014891 5692049000 9016.01 20619.7 8864.07 10625.1 8602.67 9057.3 9180.1 10838.6 9543.4 12614.5 TRUE FALSE FALSE 7959.166975 21254.96852 9343.288437 11058.4375 7968.068173 8884.547093 9534.179532 12072.42241 9150.017013 12539.46839 0.634729219 1.695045424 0.74511041 0.881890456 0.635439073 0.708526615 0.760333631 0.962753925 0.729697362 1 13.61418857 -5.954832449 23.08295103 0.892774845 0.761708834 0.067988036 0.287978355 178.8740855 91411.67303 0.044086286 0.07991313 1.11E-06 5.954832449 -0.131066011 SPITSS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 1 SPITSSPPK 9 0 G3V5T8;Q52LA3 G3V5T8 LIN52 Protein lin-52 homolog 1 0 SPIT(0.003)S(0.43)S(0.567)PPK 85.377 0.035191 85772000 7941.3 6576.9 6462.6 6346.3 6061.1 6329.4 5488 5734.5 6796 6942 TRUE FALSE FALSE 7010.432852 6779.526493 6811.987704 6605.129545 5613.984728 6208.67724 5699.673998 6387.2923 6515.866004 6900.708675 1.015900422 0.982439169 0.987143209 0.957166844 0.81353742 0.899715889 0.825954879 0.925599471 0.944231428 1 12.75252881 -5.953732024 4.302650651 1.003157401 0.865964036 0.692674397 0.03689491 0.060713651 2.437457881 0.004369019 0.008011372 1.11E-06 5.953732024 -0.137193365 NSTWSGESK ddPTM_HeLa_CUDC101_4h_R1 1 NSTWSGESK 9 0 P19338 P19338 NCL Nucleolin 0 0 123.96 0.001439 0 2974.2 1752.8 2754 3172.5 2430.4 2184.7 2470.2 1708.3 2978.9 4863.6 FALSE FALSE TRUE 2625.568785 1806.80169 2902.88957 3301.888263 2251.114234 2143.030487 2565.476441 1902.765967 2856.108481 4834.671091 0.543070818 0.373717603 0.600431656 0.682960268 0.4656189 0.443262933 0.53064136 0.393566787 0.590755488 1 12.23920203 -9.122666595 0.548256772 1.07506716 0.492795568 0.195526554 0.154658262 0.401239866 0.182994029 0.119897567 0.023305382 7.54E-10 9.122666595 -0.582271592 ESAAPAS(ph)PAPSPAPS(ph)PTPAPPQK ddPTM_HeLa_CUDC101_4h_R1 2 ESAAPASPAPSPAPSPTPAPPQK 23 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 ES(0.002)AAPAS(0.935)PAPS(0.1)PAPS(0.798)PT(0.166)PAPPQK;ES(0.001)AAPAS(0.94)PAPS(0.059)PAPS(0.995)PT(0.005)PAPPQK ; 112.75 2.70E-06 5762100 10485.4 10508.4 9215.1 9114 8629 8206.8 7895.3 6948.2 10684.4 11169.1 TRUE FALSE FALSE 9256.317307 10832.15135 9713.29618 9485.708314 7992.455861 8050.268963 8199.824366 7739.155002 10243.98451 11102.6657 0.833702244 0.975635189 0.874861627 0.854363139 0.71986819 0.725075327 0.738545552 0.697053772 0.922659908 1 13.43861848 -5.953204692 1.771284354 0.92273923 0.716953011 0.818407607 0.044758075 0.155289481 0.97711153 0.010129976 0.020948856 1.11E-06 5.953204692 -0.205786219 AGS(ph)PDVLR ddPTM_HeLa_CUDC101_4h_R1 1 AGSPDVLR 8 0 Q8NDX6 Q8NDX6 ZNF740 Zinc finger protein 740 1 0 AGS(1)PDVLR 101.46 0.017506 78420000 6116.4 5389 5445.7 4898.1 4214.8 4402.9 4457.5 4387.2 4074.3 5317.1 TRUE FALSE FALSE 5399.444864 5555.028702 5740.111014 5097.865689 3903.882601 4318.922018 4629.427268 4886.621114 3906.35563 5285.473653 1.021563103 1.050999223 1.08601639 0.964504986 0.738606009 0.817130555 0.875877466 0.924537976 0.739073901 1 12.36781705 -5.952617599 7.568145963 1.019600922 0.840719475 0.267175049 0.101856521 0.088111015 11.8441309 0.007631977 0.013854217 1.12E-06 5.952617599 -0.178881447 NSWGEPWGER ddPTM_HeLa_CUDC101_4h_R1 2 NSWGEPWGER 10 0 Q9UBR2 Q9UBR2 CTSZ Cathepsin Z 0 0 ; ; 139.15 0.0074895 38573000 4680.4 4338.9 4014.5 4280 4622.9 3749.1 3597.4 3505.6 3819.3 3886 FALSE FALSE TRUE 4131.770607 4472.576366 4231.536013 4454.5569 4281.877877 3677.592164 3736.152923 3904.663334 3661.866837 3862.885899 1.069607209 1.157832896 1.09543386 1.153168128 1.108466051 0.952032304 0.967192151 1.010815084 0.947961429 1 11.91546335 -5.251774089 24.83661196 1.061616682 0.975731074 0.327317165 0.062945301 665.9485207 1711262.426 0.009301527 0.023366446 5.60E-06 5.251774089 -0.085885608 TKPTQAAGPSS(ph)PQKPPT(ph)PEETK ddPTM_HeLa_CUDC101_4h_R1 4 TKPTQAAGPSSPQKPPTPEETK 22 2 F5H8D7;P18887 F5H8D7 XRCC1 DNA repair protein XRCC1 2 0 T(0.001)KPT(0.001)QAAGPS(0.345)S(0.819)PQKPPT(0.638)PEET(0.196)K;T(0.005)KPT(0.018)QAAGPS(0.457)S(0.523)PQKPPT(0.977)PEET(0.02)K;TKPTQAAGPS(0.561)S(0.695)PQKPPT(0.688)PEET(0.055)K;T(0.001)KPT(0.002)QAAGPS(0.47)S(0.536)PQKPPT(0.986)PEET(0.006)K ;;; 71.117 0.0051245 328233000 15325.7 12943.8 13331 13210.3 11521.3 12540.6 11757.2 12891.7 13845.2 14268.9 TRUE FALSE FALSE 13529.24468 13342.58314 14051.71418 13749.07313 10671.39665 12301.40895 12210.67914 14359.23902 13274.495 14184.02795 0.953836578 0.940676597 0.990671637 0.969334887 0.752353048 0.867271906 0.860875288 1.012352702 0.935876258 1 13.79197966 -5.951241994 24.99991402 0.975299826 0.870524432 0.339152887 0.061841303 84.04035881 43089.96474 0.00870138 0.015772589 1.12E-06 5.951241994 -0.104775394 NSYVAGQYDDAASYQR ddPTM_HeLa_CUDC101_4h_R1 2 NSYVAGQYDDAASYQR 16 0 P11413-3;P11413;P11413-2;E9PD92;E7EM57;E7EUI8 P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 0 0 ; ; 241.41 3.66E-43 37670000 5396.3 4485.7 4842.1 4046.4 4495.9 3982.9 4033.2 3881.9 4467.4 4417.7 FALSE FALSE TRUE 4763.753894 4623.8991 5103.878573 4211.429682 4164.246414 3906.932818 4188.761875 4323.799805 4283.251881 4391.423324 1.084785853 1.052938594 1.162237889 0.959012459 0.948268046 0.889673468 0.953850623 0.984601002 0.975367567 1 12.1004729 -6.030258538 24.64935106 1.050997045 0.942498981 0.523932678 0.051541975 349.9491201 285076.8044 0.007837571 0.013009506 9.33E-07 6.030258538 -0.108498065 S(ph)FDDPIVQTER ddPTM_HeLa_CUDC101_4h_R1 2 SFDDPIVQTER 11 0 O95757;E9PDE8;D6RJ96 O95757 HSPA4L Heat shock 70 kDa protein 4L 1 0 S(1)FDDPIVQTER;S(1)FDDPIVQTER ; 161.87 9.89E-05 16859700 1930.94 2507.5 1705.33 2157.52 3374.8 2136.19 2137.7 1983.51 3298.6 2773.9 TRUE FALSE FALSE 1704.59814 2584.753103 1797.525298 2245.512991 3125.847728 2095.445735 2220.151805 2209.304761 3162.630312 2757.400719 0.618190214 0.937387549 0.651891212 0.814358601 1.133621133 0.759935152 0.805161103 0.80122731 1.146960719 1 11.42909323 -5.950479602 24.99996621 0.810844209 0.875806557 0 0.178212356 394.0280522 198919.7866 0.026017668 0.04716102 1.12E-06 5.950479602 0.064962348 GPEDSWLLLSAPGPTPASPRPAS(ph)PCGK ddPTM_HeLa_CUDC101_4h_R1 1 GPEDSWLLLSAPGPTPASPRPASPCGK 27 1 Q14934-18;Q14934-17;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-9;Q14934-10;Q14934-11;Q14934-12;Q14934-13;Q14934-14;Q14934-15;Q14934-16;Q14934-2 Q14934-18 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 GPEDSWLLLSAPGPT(0.095)PAS(0.428)PRPAS(0.477)PCGK 128.49 3.64E-11 41042000 2013.6 1529.3 1701.2 1388.4 1749.7 1468.1 1186.1 1391.3 1635.3 1756 TRUE FALSE FALSE 1777.56886 1576.41592 1793.172018 1445.024953 1620.628117 1440.098439 1231.848274 1549.679968 1567.892242 1745.555234 1.018340082 0.903102858 1.027278876 0.827831125 0.928431301 0.825008806 0.705705698 0.887786269 0.898219782 1 10.76947029 -5.948962062 0.768872598 1.007990462 0.789500363 0.406823096 0.072947773 0.306564888 0.3399309 0.011119761 0.03522252 1.12E-06 5.948962062 -0.218490099 GDVTAEEAAGAS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 7 GDVTAEEAAGASPAK 15 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK;GDVT(0.006)AEEAAGAS(0.994)PAK;GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK;GDVTAEEAAGAS(1)PAK ;;;;;; 225.6 9.99E-33 926416000 38507.08 32528.52 30796.7 28656.89 29133.05 28793.97 26447.68 21059.75 33092.62 33993.35 TRUE FALSE FALSE 33993.33846 33530.68515 32461.66276 29825.64184 26983.96294 28244.773 27467.77588 23457.10681 31728.5282 33791.15604 1.005983294 0.992291744 0.960655584 0.882646388 0.798551044 0.83586288 0.812868783 0.694178879 0.938959536 1 15.04435809 -5.947674347 0.908498086 1.005462104 0.76257401 0.851300358 0.038368209 0.117367639 0.187102903 0.005515067 0.01565578 1.13E-06 5.947674347 -0.242888094 SSS(ph)PIPLTPSK ddPTM_HeLa_CUDC101_4h_R1 2 SSSPIPLTPSK 11 0 Q8N5Y2;Q8N5Y2-3;Q8N5Y2-2;A0A3B3IT59;Q8N5Y2-6;Q8N5Y2-4;A0A3B3ITL5;A0A3B3ITF3;A0A3F2YNX2;A0A3B3IRN2 Q8N5Y2 MSL3 Male-specific lethal 3 homolog 1 0 SS(0.002)S(0.997)PIPLTPSK;S(0.007)S(0.289)S(0.704)PIPLTPSK ; 163.45 7.49E-05 95242000 13226.9 11736.6 10974.5 10871.3 10447.3 10393.5 10248.9 9952.1 12516.7 11770.2 TRUE FALSE FALSE 11676.46283 12098.19073 11567.81467 11314.6786 9676.623493 10195.2613 10644.20351 11085.00684 12000.75633 11700.19033 0.997972042 1.034016576 0.988686025 0.967050816 0.827048383 0.87137568 0.909746184 0.94742107 1.025688984 1 13.51424438 -5.946088791 6.260209863 1.00056783 0.889229928 0.76274646 0.031501371 0.074340772 6.262676915 0.004563202 0.008307314 1.13E-06 5.946088791 -0.111337903 NTAELQPESGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 NTAELQPESGKR 12 1 O15355 O15355 PPM1G Protein phosphatase 1G 0 1 ; NTAELQPESGK(1)R;NTAELQPESGK(1)R 232.17 1.95E-30 7036700 2754.3 2568.9 2329.2 2735.1 3638.2 2946.8 3244 3292.5 2981.1 2609.6 FALSE TRUE FALSE 2431.445129 2648.044764 2455.123597 2846.6492 3369.817234 2890.5947 3369.122167 3667.304891 2858.217796 2594.077983 0.937306105 1.020803839 0.946433998 1.097364543 1.299042379 1.114305244 1.298774435 1.413721914 1.101824161 1 11.34100614 -5.314616917 0.657913054 0.966101132 1.413171719 0.711143227 0.083056866 0.382163699 0.231638064 0.013672575 0.099400432 4.85E-06 5.314616917 0.447070587 QLGAQS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 1 QLGAQSPGR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QLGAQS(1)PGR 93.839 0.023518 7242100 1917.4 1547.4 1403.7 1362.6 1162.3 1326.6 1330.7 944.31 1365.4 1324.3 TRUE FALSE FALSE 1692.645279 1595.07356 1479.588268 1418.172718 1076.559445 1301.297315 1382.025545 1051.806433 1309.117634 1316.423005 1.285791324 1.211672505 1.123945922 1.077292567 0.817791425 0.988510008 1.049833936 0.79898819 0.99445059 1 10.36240743 -5.945451431 5.870853481 1.142946041 0.929134616 0.454710541 0.107503104 0.157339671 11.57839564 0.018804655 0.034273491 1.13E-06 5.945451431 -0.213811425 NTDEMVELR ddPTM_HeLa_CUDC101_4h_R1 4 NTDEMVELR 9 0 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ;;; ;;; 136.52 0.01291 184868000 13997.2 13592.5 12354.6 11430.7 13242.5 11994.1 11644.6 12533 13607.6 13953.6 FALSE FALSE TRUE 12356.46943 14011.26881 13022.52705 11896.89335 12265.62716 11765.33253 12093.73612 13959.70606 13046.68897 13870.60337 0.89083864 1.010141264 0.938858008 0.85770554 0.884289373 0.848220673 0.871896903 1.006423851 0.94059996 1 13.75974293 -6.423185615 6.527458444 0.95265919 0.889759662 0.271293507 0.051223619 0.299019633 16.75625431 0.0089603 0.013705482 3.77E-07 6.423185615 -0.062899529 NTDQASMPDNTAAQK ddPTM_HeLa_CUDC101_4h_R1 2 NTDQASMPDNTAAQK 15 0 P35579;P35579-2;A0A494C024;P35749-4;P35749-3;P35749;P35749-2 P35579;P35749-4 MYH9;MYH11 Myosin-9;Myosin-11 0 0 ; ; 337.53 1.18E-190 51537000 4700.1 3956.5 3949.8 4384.1 4599 4574.4 3948.8 4311 4384.3 3880.5 FALSE FALSE TRUE 4149.161403 4078.395075 4163.338135 4562.902548 4259.740932 4487.150941 4101.106539 4801.746814 4203.577298 3857.418613 1.075631612 1.057286098 1.079306799 1.182890167 1.10429833 1.163252266 1.063173835 1.244808328 1.089738429 1 11.91342 -1.000000049 0.058852361 0.805792714 1.717287166 0.374107105 0.053542225 150.3405306 0.668717674 2.175456871 11.88363495 0.099999989 1.000000049 0.911494452 GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(ph)PGKQK ddPTM_HeLa_CUDC101_4h_R1 1 GGPEGVAAQAVASAASAGPADAEMEEIFDDASPGKQK 37 1 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 1 0 GGPEGVAAQAVASAASAGPADAEMEEIFDDAS(1)PGKQK 83.25 5.45E-10 4783100 1579.8 1558.2 1289.4 1352.5 1374.3 1410.3 1310.8 1208.4 1286.5 1403.2 TRUE FALSE FALSE 1394.618239 1606.206295 1359.108864 1407.660796 1272.920627 1383.400877 1361.357995 1345.959371 1233.469925 1394.853704 0.99983119 1.151523124 0.974373771 1.009181674 0.912583609 0.991789227 0.975986221 0.964946623 0.88430057 1 10.4458981 -5.945002498 24.99996476 1.011081187 0.964090981 0.085088271 0.063997252 124.5518868 56616.15528 0.007340022 0.013304927 1.14E-06 5.945002498 -0.046990207 IACDEEFSDS(ph)EDEGEGGRR ddPTM_HeLa_CUDC101_4h_R1 1 IACDEEFSDSEDEGEGGRR 19 1 Q92769;Q92769-3 Q92769 HDAC2 Histone deacetylase 2 1 0 IACDEEFS(0.325)DS(0.675)EDEGEGGRR 79.326 0.0037685 38217000 984.05 1229.4 980.66 867.39 895.52 904.69 699.39 886.42 1216.2 905.47 TRUE FALSE FALSE 868.7011507 1267.276357 1033.677446 902.7659134 829.4592737 887.4345456 726.3657066 987.3264698 1166.067721 900.0842242 0.965133181 1.407953081 1.148423023 1.002979376 0.921535176 0.985946117 0.806997487 1.096926758 1.295509564 1 9.813916196 -5.940457758 6.183733964 1.034695585 0.945930462 0.067122533 0.164518314 0.471779389 36.07425493 0.022815784 0.041579421 1.15E-06 5.940457758 -0.088765123 ALLPLELQDDGS(ph)DSRK ddPTM_HeLa_CUDC101_4h_R1 2 ALLPLELQDDGSDSRK 16 1 A0A1W2PPT2;Q15906;Q15906-2 A0A1W2PPT2 VPS72 Vacuolar protein sorting-associated protein 72 homolog 1 0 ALLPLELQDDGS(0.702)DS(0.298)RK;ALLPLELQDDGS(0.985)DS(0.015)RK ; 113.73 0.00064361 8792900 3030 2585 2498.6 2966.7 3531.3 3230.6 3358.4 3089.3 2488.9 2929 TRUE FALSE FALSE 2674.827993 2664.640786 2633.681874 3087.694849 3270.803034 3168.981688 3487.934613 3440.973425 2386.306489 2911.578178 0.918686647 0.915187786 0.904554751 1.060488388 1.123378056 1.088406869 1.197953275 1.181824157 0.819592105 1 11.50758564 -5.939217728 2.349636397 0.952633623 1.151755066 0.777961201 0.057709471 0.099342273 1.108548706 0.007401937 0.014494404 1.15E-06 5.939217728 0.199121443 NTDVVATLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 NTDVVATLKK 10 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4;K7EPS6 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 0 1 ; NTDVVATLK(1)K;NTDVVATLK(1)K 122.7 0.0027432 1729190 1008.23 876.74 858.14 685.42 1380.03 1072.09 829.06 915.25 1604.08 1051.45 FALSE TRUE FALSE 890.0468078 903.7513202 904.5336441 713.3743902 1278.227936 1051.641669 861.0371219 1019.43836 1537.959143 1045.195929 0.851559773 0.864671681 0.865420176 0.682526951 1.222955334 1.006167017 0.823804512 0.97535623 1.471455352 1 10.02955769 -5.7650682 24.99954739 0.902000527 0.993915741 0 0.216614585 170.9757777 1177892.766 0.019052353 0.035527847 1.72E-06 5.7650682 0.091915214 NTEDLQCYVK(ac)PTK ddPTM_HeLa_CUDC101_4h_R1 1 NTEDLQCYVKPTK 13 1 Q92613 Q92613 JADE3 Protein Jade-3 0 1 NTEDLQCYVK(1)PTK 180.84 8.19E-08 939410 427.75 275.02 320.56 504.28 559.05 425.94 368.96 322.41 397.6 187.82 FALSE TRUE FALSE 377.6097934 283.4930402 337.8904432 524.8467181 517.8099953 417.8159042 383.1909108 359.1118512 381.2107597 186.7028383 2.022517691 1.518418482 1.809776682 2.811134115 2.773444689 2.237865841 2.052410742 1.923440771 2.041804845 1 7.54460005 -9.068827391 0.354584942 0.636522004 2.313426189 0.115014232 0.478581121 1.416123057 0.261761931 0.938841223 0.178613322 8.53E-10 9.068827391 1.676904185 NTEDLTEEWLR ddPTM_HeLa_CUDC101_4h_R1 1 NTEDLTEEWLR 11 0 G3V4P8;P60983 G3V4P8 GMFB Glia maturation factor beta 0 0 163.12 0.00044219 9044300 1145.4 1147.8 1043.5 1138.1 1077.8 1073.4 1248.4 1062.5 1358.9 1235.2 FALSE FALSE TRUE 1011.137948 1183.162358 1099.914766 1184.516637 998.2928413 1052.926683 1296.551206 1183.450705 1302.885567 1227.852975 0.823500833 0.963602631 0.895803316 0.964705597 0.813039396 0.857534823 1.055949883 0.96383747 1.061108775 1 10.26192211 -4.759311439 24.99764204 0.909718272 1.009893677 0.152392608 0.078061748 62.86385935 738427.0962 0.010647661 0.036262292 1.74E-05 4.759311439 0.100175406 IACKS(ph)PPPESVDT(ph)PTSTK ddPTM_HeLa_CUDC101_4h_R1 1 IACKSPPPESVDTPTSTK 18 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 2 0 IACKS(0.999)PPPES(0.017)VDT(0.74)PT(0.175)S(0.051)T(0.018)K 75.177 0.02072 23042000 4252 4045.4 4398.6 4121.6 4162.7 3855.2 3271.8 848.55 3555.6 3723.8 TRUE FALSE FALSE 3753.587006 4170.033979 4636.401621 4289.696663 3855.625914 3781.668483 3397.994422 945.145502 3409.036663 3701.650672 1.014030587 1.126533633 1.252522734 1.158860477 1.041596373 1.021616792 0.91796734 0.25533082 0.920950399 1 11.85395304 -4.219819937 2.458631368 1.04718742 0.024557335 0.878285438 0.090066525 0.167519283 1.126109243 0.013608642 0.374326018 6.03E-05 4.219819937 -1.022630085 down HVVLGAIENKVES(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 HVVLGAIENKVESK 14 1 P41227;P41227-2 P41227 NAA10 N-alpha-acetyltransferase 10 1 0 HVVLGAIENKVES(1)K 77.051 0.017991 23675000 3125.1 3293.9 2996 2777.1 2473.7 3163.6 2428.1 1983.8 3635.5 3096.4 TRUE FALSE FALSE 2758.780515 3395.381155 3157.972822 2890.362142 2291.220079 3103.259601 2521.75263 2209.627773 3485.643151 3077.982475 0.896295069 1.103119067 1.025987915 0.939044379 0.744390229 1.008212238 0.819287521 0.717881856 1.132444119 1 11.5877693 -5.938885546 8.825747547 0.969318716 0.83580786 0.420448486 0.103083933 0.281123122 37.40483435 0.013744226 0.024949065 1.15E-06 5.938885546 -0.133510855 TKEYVSNDAAQS(ph)DDEEK ddPTM_HeLa_CUDC101_4h_R1 1 TKEYVSNDAAQSDDEEK 17 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 TKEYVSNDAAQS(1)DDEEK 158.37 3.02E-05 10060000 3360.9 3215.3 3230.1 2825.6 2550.6 2803.4 2373.3 2352 2978.4 3220.1 TRUE FALSE FALSE 2966.940397 3314.359582 3404.728977 2940.840181 2362.44732 2749.929816 2464.838976 2619.742173 2855.629091 3200.946702 0.926894657 1.035431043 1.063663126 0.918740752 0.73804644 0.859098908 0.77003437 0.818427302 0.892120162 1 11.64428294 -5.937458134 5.58121889 0.978253699 0.800228624 0.723084602 0.054601122 0.07858526 4.817111179 0.007695072 0.014059874 1.15E-06 5.937458134 -0.178025075 NQSPT(ph)EAEKPASSSLPSSPPPQLLTR ddPTM_HeLa_CUDC101_4h_R1 2 NQSPTEAEKPASSSLPSSPPPQLLTR 26 1 Q99567;I3L2W3 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 NQS(0.024)PT(0.959)EAEKPAS(0.011)S(0.004)S(0.002)LPSSPPPQLLTR;NQS(0.046)PT(0.934)EAEKPAS(0.001)S(0.011)S(0.005)LPS(0.002)S(0.002)PPPQLLTR ; 72.935 0.00034162 101679000 1852.28 1525.32 1477.5 1678.77 1953.94 1783.86 1591.72 1825.76 1629.39 1875.9 TRUE FALSE FALSE 1635.158546 1572.313301 1557.378119 1747.237497 1809.801739 1749.835843 1653.113174 2033.597138 1562.225855 1864.742063 0.876881891 0.843180047 0.835170799 0.936986155 0.970537306 0.938379563 0.886510368 1.090551438 0.837770481 1 10.86476037 -5.937062579 6.487391286 0.922567928 0.962367798 0.153338632 0.072148977 0.551748419 43.99434209 0.011638705 0.02120118 1.16E-06 5.937062579 0.03979987 VSNS(ph)PEPQK ddPTM_HeLa_CUDC101_4h_R1 3 VSNSPEPQK 9 0 O60271;O60271-3;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 VS(0.016)NS(0.984)PEPQK;VS(0.19)NS(0.81)PEPQK;VS(0.226)NS(0.774)PEPQK ;; 113.67 0.0084033 30809600 12351.8 4927.4 11364 12057.6 7402.8 7051.5 6934.1 3515.1 11192.5 14401.2 TRUE FALSE FALSE 10903.94073 5079.207354 11978.37221 12549.36105 6856.710192 6917.004386 7201.55056 3915.244775 10731.14041 14315.54102 0.761685549 0.35480373 0.836739051 0.876624993 0.478969686 0.483181486 0.503058218 0.27349611 0.74961473 1 13.80529457 -5.936683336 0.147358284 1.192885768 1.54E-11 0.419358946 0.176314682 6.089297822 0.3283441 0.769614881 1.853194944 1.16E-06 5.936683336 -1.192885768 GAQASSGS(ph)PALPR ddPTM_HeLa_CUDC101_4h_R1 4 GAQASSGSPALPR 13 0 P42684-2;P42684-6;P42684-3;P42684;P42684-4;P42684-7;P42684-10;P42684-5 P42684-2 ABL2 Abelson tyrosine-protein kinase 2 1 0 GAQAS(0.029)S(0.132)GS(0.839)PALPR;GAQAS(0.021)S(0.077)GS(0.902)PALPR;GAQAS(0.002)S(0.082)GS(0.915)PALPR;GAQAS(0.031)S(0.156)GS(0.813)PALPR ;;; 148.18 0.00042714 249460000 9491.6 7718.5 8083.4 7757.7 8169.3 7784.2 6737.8 7440.4 7759.2 8586 TRUE FALSE FALSE 8379.009036 7956.297836 8520.413055 8074.092538 7566.667015 7635.729354 6997.679203 8287.385061 7439.362492 8534.93009 0.98173142 0.932204219 0.998299103 0.946005703 0.886552899 0.894644628 0.819887114 0.970996244 0.871637191 1 13.05916362 -5.934455733 2.702547907 0.986283694 0.88707323 0.143283779 0.053050884 0.136779665 2.026878671 0.00549497 0.010557556 1.16E-06 5.934455733 -0.099210464 SQNSQESTADES(ph)EDDMSSQASK ddPTM_HeLa_CUDC101_4h_R1 2 SQNSQESTADESEDDMSSQASK 22 0 Q9BXW9;Q9BXW9-1 Q9BXW9 FANCD2 Fanconi anemia group D2 protein 1 0 SQNSQESTADES(1)EDDMSSQASK;SQNSQESTADES(1)EDDMSSQASK ; 186.27 1.12E-13 29164000 9533.5 6559.7 6232.8 7041.4 8125.4 6958.3 6174 1618.22 6257.2 7013.2 TRUE FALSE FALSE 8415.997582 6761.796582 6569.764021 7328.578728 7526.00543 6825.582021 6412.133248 1802.431624 5999.275568 6971.485174 1.207202966 0.969921962 0.942376532 1.05122202 1.079541194 0.979071439 0.919765744 0.258543421 0.860544836 1 12.76725032 -4.219535442 2.104464689 1.069531463 1.25E-15 0.825049443 0.100614396 0.213086902 0.942493175 0.014079547 0.446867471 6.03E-05 4.219535442 -1.069531463 down SINEENGEVS(ph)EDQSQNK ddPTM_HeLa_CUDC101_4h_R1 2 SINEENGEVSEDQSQNK 17 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 SINEENGEVS(1)EDQSQNK;SINEENGEVS(0.607)EDQS(0.393)QNK ; 204.71 2.37E-17 27424000 7152.9 6065.5 5960.9 5308.9 5854.4 5246.4 5070.6 4227.5 6099.8 6473.5 TRUE FALSE FALSE 6314.447905 6252.370866 6283.164285 5525.419889 5422.532576 5146.333661 5266.174741 4708.741512 5848.363662 6434.995334 0.981266897 0.971620109 0.976405414 0.858651732 0.842663016 0.799741631 0.818364966 0.731739693 0.908837281 1 12.65172339 -5.934255701 0.90349098 0.993464479 0.771726487 0.836101003 0.035397559 0.091034104 0.143187938 0.00386011 0.011125733 1.16E-06 5.934255701 -0.221737992 GDS(ph)LILEHQWELEKLELLHEVEK ddPTM_HeLa_CUDC101_4h_R1 1 GDSLILEHQWELEKLELLHEVEK 23 1 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 GDS(1)LILEHQWELEKLELLHEVEK 45.017 0.03228 35190000 954.1 1041.6 964.32 1083.6 1541.5 1269.2 1099.1 1280.8 1191.8 1312.9 TRUE FALSE FALSE 842.2618443 1073.690461 1016.454056 1127.793892 1427.786616 1244.992125 1141.492655 1426.601095 1142.6735 1305.090812 0.645366465 0.822694062 0.778837799 0.864149744 1.094013231 0.95395057 0.874646151 1.093104849 0.875550949 1 10.34993448 -5.934035126 7.612654163 0.823618722 0.990628913 0.410895348 0.101784429 0.272443252 27.00904572 0.021070895 0.038304911 1.16E-06 5.934035126 0.167010192 RTS(ph)QEGPGDSVK ddPTM_HeLa_CUDC101_4h_R1 1 RTSQEGPGDSVK 12 1 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 RT(0.202)S(0.798)QEGPGDSVK 81.709 0.017235 6677600 1114.2 816.75 947.15 877.37 805.77 738.57 618.52 690.68 978.12 1116.1 TRUE FALSE FALSE 983.595165 841.9130994 998.355794 913.1529409 746.3299524 724.4830078 642.3765236 769.3042194 937.8014796 1109.461388 0.886551958 0.758848491 0.899856277 0.823059686 0.672695743 0.653004256 0.57899854 0.693403329 0.845276357 1 10.11564374 -5.933033678 0.290848154 1.008638392 0.501099569 0.654566733 0.073457651 0.886806608 0.127459176 0.040793099 0.15657825 1.17E-06 5.933033678 -0.507538823 NTGIICTIGPASR ddPTM_HeLa_CUDC101_4h_R1 1 NTGIICTIGPASR 13 0 P14618;B4DNK4;P14618-2;H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;H3BU13 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 117.27 0.014854 11733000 645.96 516.46 543.94 461.55 782.55 767.17 578.05 627.67 774.4 441.76 FALSE FALSE TRUE 570.241548 532.3715204 573.3470417 480.374004 724.8228456 752.5375104 600.3455821 699.1214157 742.4789042 439.1323919 1.298564074 1.212325782 1.305635959 1.093916124 1.650579322 1.713691644 1.36711751 1.592051574 1.690786009 1 8.778512146 -1.000000012 0.061272212 0.405290271 3.383396036 0 0.25939668 151.5570085 0.699932453 6.898291959 40.31303126 0.099999997 1.000000012 2.978105765 NSPLDCGSAS(ph)PNK ddPTM_HeLa_CUDC101_4h_R1 3 NSPLDCGSASPNK 13 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 NSPLDCGS(0.001)AS(0.998)PNK;NSPLDCGS(0.031)AS(0.969)PNK;NSPLDCGS(0.387)AS(0.613)PNK ;; 195.5 2.12E-16 112425000 16651.3 13436.1 13338.7 12915.2 12008.2 11452.9 10989.7 12491.4 14774.8 13851.3 TRUE FALSE FALSE 14699.45986 13850.05032 14059.83047 13441.93768 11122.37901 11234.45501 11413.57641 13913.37048 14165.77649 13768.91185 1.067583264 1.005892874 1.021128657 0.976252722 0.807789252 0.815929039 0.828938157 1.010491652 1.028823239 1 13.74912693 -5.931985492 4.46021408 1.028682755 0.860223843 0.640613266 0.056086909 0.097357762 3.822704943 0.008541529 0.015744685 1.17E-06 5.931985492 -0.168458912 TEELIES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 TEELIESPK 9 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 TEELIES(1)PK;TEELIES(1)PK;TEELIES(1)PK ;; 139.32 0.0019548 39682000 13680.5 11799 11055.7 10092.1 8468.1 9234.7 8763.8 7966.7 12457.1 10334.8 TRUE FALSE FALSE 12076.89253 12162.5132 11653.40458 10503.69946 7843.425134 9058.563484 9101.822702 8873.596925 11943.61307 10273.32815 1.175557945 1.183892214 1.134335866 1.022424214 0.763474603 0.881755489 0.885966317 0.863750948 1.162584597 1 13.32661601 -5.931829757 5.283485916 1.097054499 0.854913432 0.813589034 0.062651769 0.091811582 4.860823961 0.012073989 0.022114277 1.17E-06 5.931829757 -0.242141068 TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIKVTLATLK ddPTM_HeLa_CUDC101_4h_R1 2 TVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLK 35 2 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 1 0 TVSLGAGAKDELHIVEAEAMNY(0.46)EGS(0.539)PIKVT(0.001)LATLK;TVSLGAGAKDELHIVEAEAMNY(0.107)EGS(0.89)PIKVT(0.002)LATLK ; 105.21 1.08E-13 1561430000 6270.6 6320 5675.8 6285.4 7981.3 7583.6 6185.2 7387.3 7114.7 6559.4 TRUE FALSE FALSE 5535.569774 6514.711709 5982.650916 6541.74578 7392.5354 7438.955465 6423.765236 8228.240372 6821.429055 6520.384397 0.848963717 0.999130007 0.917530402 1.003276093 1.133757605 1.140876828 0.985181984 1.261925658 1.046169771 1 12.6707413 -5.931290437 3.134097233 0.932790338 1.121200414 0.4621783 0.082637415 0.147134444 2.935303679 0.012177239 0.023023647 1.17E-06 5.931290437 0.188410075 NTHGCK(ac)VGPGR ddPTM_HeLa_CUDC101_4h_R1 1 NTHGCKVGPGR 11 1 Q9HBN3;Q5JQP4;Q5JQP2;Q5JQP8;Q9UGP5-2;Q9UGP5 Q9HBN3 POLL DNA polymerase lambda 0 1 NTHGCK(1)VGPGR 85.924 0.030566 328880 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 NTLPTKETIEQEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 NTLPTKETIEQEKR 14 2 P63313 P63313 TMSB10 Thymosin beta-10 0 1 NTLPTKETIEQEK(1)R 120.29 0.008034 3215100 1071.7 579.67 789.27 607.25 1961.2 1299 1944.7 2191.6 1342.1 343.48 FALSE TRUE FALSE 946.0769506 597.5289456 831.9403236 632.0162798 1816.526183 1274.223739 2019.70773 2441.082885 1286.77807 341.4369657 2.770868552 1.750041752 2.436585394 1.851048197 5.320238773 3.731944304 5.91531654 7.149439371 3.768713406 1 8.41547545 -1 0.279229132 1.43237292 46.42582294 0.690689484 1.058703152 13.5014646 0.172006037 0.35877498 300.0878732 0.1 1 44.99345002 RLDS(ph)SACLHAVGDK ddPTM_HeLa_CUDC101_4h_R1 1 RLDSSACLHAVGDK 14 1 E5RJP4;O94808 E5RJP4 GFPT2 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 1 0 RLDS(0.5)S(0.5)ACLHAVGDK 63.337 0.034219 12668000 1305.2 980.85 1128.9 1275.9 1974.6 2079.9 1776.9 1562.5 784.49 940.19 TRUE FALSE FALSE 1152.206435 1011.068826 1189.931749 1327.936717 1828.937692 2040.229373 1845.435628 1740.368684 752.1529902 934.5977081 1.232836786 1.081822497 1.273202083 1.420864513 1.956925077 2.183002756 1.974577524 1.862158091 0.804787968 1 9.868201689 -5.930346364 1.962506286 1.117200579 2.024150312 0.901410397 0.142667557 0.062745928 0.487083906 0.019148454 0.039035752 1.17E-06 5.930346364 0.906949732 SRNT(ph)DEMVELR ddPTM_HeLa_CUDC101_4h_R1 1 SRNTDEMVELR 11 1 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 S(0.223)RNT(0.777)DEMVELR 94.673 0.022188 7142900 378.55 395.91 214.04 298.71 245.48 316.75 54.153 259.84 285.84 392.05 TRUE FALSE FALSE 334.1769428 408.1075178 225.6116498 310.8926849 227.3714295 310.7085215 56.24169935 289.4191353 274.0575542 389.7180692 0.857483831 1.047186544 0.578909904 0.797737415 0.583425423 0.797264859 0.14431381 0.742637199 0.703220035 1 8.606287013 -5.929073239 0.461632145 0.968095953 0.425449278 0.273266617 0.206516731 0.886440151 0.312751809 0.050376989 0.20965913 1.18E-06 5.929073239 -0.542646675 SSS(ph)LVDIREEETEGGSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSLVDIREEETEGGSR 17 1 Q96Q42-3;Q96Q42 Q96Q42-3 ALS2 Alsin 1 0 S(0.2)S(0.2)S(0.6)LVDIREEETEGGSR 54.875 0.036964 8435500 1848.8 1587.9 1570.3 1551.2 1451.1 1457.6 1409.5 1419.7 1732.2 1733.7 TRUE FALSE FALSE 1632.086467 1636.821317 1655.195168 1614.464641 1344.055244 1429.798709 1463.864887 1581.312909 1660.797983 1723.387875 0.947022136 0.949769544 0.960431016 0.936797029 0.779891319 0.829644173 0.849411156 0.917560656 0.963682063 1 10.75103172 -5.928656404 6.001913849 0.970183622 0.843846234 0.733077173 0.034345038 0.082741147 5.262860293 0.005611163 0.010245732 1.18E-06 5.928656404 -0.126337388 EKT(ph)PS(ph)PKEEDEEPES(ph)PPEKK ddPTM_HeLa_CUDC101_4h_R1 1 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 3 0 EKT(1)PS(1)PKEEDEEPES(1)PPEKK 63.095 0.0188 33621000 2507.8 2369.3 2772 2361.5 2295.8 2128.2 2104.1 2278.2 2448.7 2899.4 TRUE FALSE FALSE 2213.839486 2442.295325 2921.862705 2457.812177 2126.443408 2087.608131 2185.255842 2537.541079 2347.76355 2882.15424 0.768119712 0.847385366 1.013777356 0.852769135 0.737796534 0.724322141 0.758202254 0.880432089 0.814586366 1 11.49293183 -5.927186388 5.677072945 0.89385734 0.771512478 0.304024046 0.080875382 0.229054688 13.14602976 0.015130817 0.027672108 1.18E-06 5.927186388 -0.122344861 IIGFLRNVEKDY(ph)YDMES(ph)MVHADTRSFILK ddPTM_HeLa_CUDC101_4h_R1 1 IIGFLRNVEKDYYDMESMVHADTRSFILK 29 3 G3V4R5 G3V4R5 ZC3H14 2 0 IIGFLRNVEKDY(0.832)Y(0.173)DMES(0.333)MVHADT(0.331)RS(0.331)FILK 42.106 0.019535 50673000 280.27 236.95 268.03 246.98 502.14 269.97 218.05 275.76 394.27 263.82 TRUE FALSE FALSE 247.4171755 244.2501486 282.5205125 257.0529119 465.0981326 264.8207721 226.4602615 307.1514037 378.0180237 262.2507869 0.943437304 0.931360975 1.077291382 0.980179755 1.773486128 1.009799723 0.863525575 1.171212515 1.441437138 1 8.034803292 -5.926284502 25 0.978145959 1.192564951 0.007711708 0.266070674 54.83298712 18594.62063 0.03231664 0.058578883 1.18E-06 5.926284502 0.214418991 EEDEEPES(ph)PPEKK ddPTM_HeLa_CUDC101_4h_R1 6 EEDEEPESPPEKK 13 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK;EEDEEPES(1)PPEKK ;;;;; 180.95 1.75E-10 6079740000 34194.1 24993.2 25843.7 26843 23421.3 27415.6 24138.1 22399.8 30635.5 26675.4 TRUE FALSE FALSE 30185.91943 25763.21087 27240.88859 27937.77357 21693.55736 26892.69311 25069.1146 24949.70269 29372.69172 26516.73353 1.138372469 0.971583126 1.027309361 1.053590312 0.818108208 1.014178201 0.945407343 0.940904077 1.107703997 1 14.69461545 -5.92576226 24.99779717 1.055214661 0.936691208 0.457260821 0.063758788 31.35560541 10557.30625 0.01046037 0.018961032 1.19E-06 5.92576226 -0.118523453 NTSEQDQPMGGWEMIR ddPTM_HeLa_CUDC101_4h_R1 1 NTSEQDQPMGGWEMIR 16 0 P20700 P20700 LMNB1 Lamin-B1 0 0 135.04 0.0020035 9746400 490.54 625.27 346.32 470.13 454.4 388.39 388.54 543.8 375.43 427.42 FALSE FALSE TRUE 433.0396448 644.5338276 365.0431068 489.3039335 420.8798173 380.9821079 403.526118 605.7039939 359.9546165 424.8776868 1.019210136 1.516986765 0.859172223 1.151634808 0.99059054 0.896686552 0.949746552 1.425596148 0.847195858 1 8.73090377 -7.488145628 24.98110855 1.00847486 1.098402395 0.087137446 0.210434638 1228.274474 883419.6295 0.033728314 0.037380622 3.25E-08 7.488145628 0.089927535 KVSVSES(ph)NVLLDEEVLTDPK ddPTM_HeLa_CUDC101_4h_R1 1 KVSVSESNVLLDEEVLTDPK 20 1 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 KVS(0.336)VS(0.249)ES(0.415)NVLLDEEVLTDPK 124.66 1.16E-05 15969000 7755.7 5747.9 6074.1 6759.7 9623.3 8512.2 9523.6 6857.1 5295.1 5598.8 TRUE FALSE FALSE 6846.588603 5924.985986 6402.484219 7035.389784 8913.408331 8349.843967 9890.928442 7637.684547 5076.833737 5565.498089 1.230184342 1.064592224 1.15038836 1.264107843 1.601547281 1.500286917 1.777186567 1.372327225 0.912197553 1 12.44229509 -5.922824418 2.512830957 1.11022492 1.578585401 0.764846785 0.12707652 0.100617756 1.287536538 0.018303431 0.035715107 1.19E-06 5.922824418 0.46836048 RPMEEDGEEKS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 3 RPMEEDGEEKSPSK 14 2 Q12906-7;Q12906-4;Q12906-6;Q12906;Q12906-5;Q12906-2;Q12906-3 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 RPMEEDGEEKS(0.928)PS(0.072)K;RPMEEDGEEKS(0.99)PS(0.01)K;RPMEEDGEEKS(0.939)PS(0.061)K ;; 84.94 0.016741 2640220000 17413.9 16321 16910.5 15822.8 14473.5 15153.3 14160 15300.6 16598.6 17289.4 TRUE FALSE FALSE 15372.66904 16823.83066 17824.73278 16468.12218 13405.81874 14864.27605 14706.15594 17042.35846 15914.39868 17186.56188 0.894458656 0.978894486 1.03713197 0.95819759 0.780017483 0.864877813 0.855677595 0.991609525 0.925979192 1 14.06899335 -5.922458179 24.99963022 0.95918674 0.870956363 0.357958646 0.060431364 33.87627208 10920.24169 0.009734698 0.017645639 1.20E-06 5.922458179 -0.088230377 NTTADK(ac)LAIK ddPTM_HeLa_CUDC101_4h_R1 2 NTTADKLAIK 10 1 P38432 P38432 COIL Coilin 0 1 ; NTTADK(1)LAIK;NTTADK(1)LAIK 137.89 0.0011093 1904450 1681.4 1599.8 1499.71 1475.39 1738.19 1352.06 1440.42 1504.73 1714.08 1373.18 FALSE TRUE FALSE 1484.308841 1649.087942 1580.788859 1535.562781 1609.967187 1326.271708 1495.977482 1676.022381 1643.424897 1365.012264 1.087395974 1.20811218 1.158076671 1.124944311 1.179452543 0.971618895 1.095944352 1.227844192 1.203963466 1 10.4146982 -8.263507595 0.995564619 1.014036232 1.130247504 0 0.09105552 0.399284742 0.826495655 0.021850054 0.014763879 5.45E-09 8.263507595 0.116211273 FSSVSS(ph)PQPR ddPTM_HeLa_CUDC101_4h_R1 2 FSSVSSPQPR 10 0 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 FS(0.004)S(0.022)VS(0.282)S(0.692)PQPR;FS(0.001)S(0.005)VS(0.053)S(0.941)PQPR ; 107.34 0.0093815 166017000 11037.4 9572.1 8825.6 8717.4 8687 7528.1 7399.5 8833.4 9666.2 9299.2 TRUE FALSE FALSE 9743.612704 9867.005055 9302.738632 9072.933252 8046.177317 7384.514035 7684.901194 9838.95855 9267.755145 9243.887945 1.054060019 1.067408553 1.006366443 0.981506192 0.870432156 0.798853694 0.831349454 1.064374494 1.002581944 1 13.17428406 -5.922020084 3.042813572 1.028156393 0.88027092 0.456769952 0.068846585 0.159745896 2.994262081 0.010202225 0.019420335 1.20E-06 5.922020084 -0.147885473 SRS(ph)PSSPELNNK ddPTM_HeLa_CUDC101_4h_R1 2 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.001)RS(0.929)PS(0.035)S(0.035)PELNNK;S(0.283)RS(0.528)PS(0.16)S(0.029)PELNNK ; 104.94 0.0042243 46708000 5793.5 5473.7 5798.7 5156.4 5134.1 4723.8 4737.9 4575.8 6292.7 6199.9 TRUE FALSE FALSE 5114.394712 5642.338209 6112.195262 5366.70028 4755.367672 4633.701385 4920.64239 5096.690576 6033.312243 6163.022719 0.829851673 0.915514751 0.991752836 0.87079028 0.771596648 0.751855315 0.7984138 0.826979034 0.978953432 1 12.58942239 -5.921282998 4.297514436 0.922541575 0.786217911 0.665297026 0.051018794 0.148188599 5.233122249 0.010289249 0.01905088 1.20E-06 5.921282998 -0.136323665 IVQISGNS(ph)MPR ddPTM_HeLa_CUDC101_4h_R1 1 IVQISGNSMPR 11 0 Q9NWH9;Q9NWH9-3;H7C3F4;H0YKH2 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 IVQIS(0.006)GNS(0.994)MPR 106.55 0.007984 6156500 1162.2 1370.8 1050 1186.2 1522.3 1303.1 1374.5 1205.1 1332.6 1283.1 TRUE FALSE FALSE 1025.968678 1413.032723 1106.766176 1234.578363 1410.002962 1278.245539 1427.514925 1342.283713 1277.669664 1275.468064 0.804386018 1.107854256 0.86773335 0.967941415 1.105478845 1.002177612 1.119208678 1.052385199 1.001726111 1 10.31681106 -5.920082682 4.809826022 0.920587709 1.067727209 0.242534235 0.085462443 0.182028476 7.674998944 0.014112162 0.025988013 1.20E-06 5.920082682 0.1471395 NVALLSQLYHSPAR ddPTM_HeLa_CUDC101_4h_R1 1 NVALLSQLYHSPAR 14 0 Q15717;Q15717-2 Q15717 ELAVL1 ELAV-like protein 1 0 0 85.163 0.019385 400330 140.91 0 142.41 0 157.82 127.85 208.86 138.88 115.29 175.98 FALSE FALSE TRUE 124.3927434 0 150.1091154 0 146.177933 125.4114743 216.9158002 154.6895378 110.5376974 174.9332631 0.711086852 0 0.858093611 0 0.835621141 0.716910392 1.239991733 0.884277438 0.631884957 1 7.45066083 -8.638130791 1.153391922 0.962407349 0.656138017 0 0.380360015 0.742187044 1.986736721 0.126081704 0.071113678 2.30E-09 8.638130791 -0.306269332 NVDLLSDMVQEHDEPILK ddPTM_HeLa_CUDC101_4h_R1 3 NVDLLSDMVQEHDEPILK 18 0 P55209;F5H4R6;P55209-2;F8W020;F8W0J6;F8VXI6;F8VUX1;F8VY35;H0YIV4;F8VV59;B7Z9C2;F8W118;P55209-3;H0YHC3;F8W543;H0YH88 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 0 0 ;; ;; 182.09 4.52E-11 34388800 9552.9 9116 8002.7 8045.3 9499.3 9402.1 8872.3 8965.9 9815.2 9745.3 FALSE FALSE TRUE 8433.123543 9396.853155 8435.350169 8373.422109 8798.555564 9222.770607 9214.507583 9986.541815 9410.613302 9687.334522 0.870530849 0.970014314 0.870760698 0.864368015 0.908253508 0.952044196 0.951191224 1.030886442 0.971434741 1 13.24188405 -4.111355846 1.578636393 0.927876954 1.099016964 0.331750222 0.045039807 1.858213696 3.233353809 0.008218923 0.54456615 7.74E-05 4.111355846 0.17114001 FPEAEALS(ph)PEQAAHYLR ddPTM_HeLa_CUDC101_4h_R1 2 FPEAEALSPEQAAHYLR 17 0 Q2NKX8 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 FPEAEALS(1)PEQAAHYLR;FPEAEALS(1)PEQAAHYLR ; 152 6.57E-05 13674700 7089 5233.9 5216 5164.1 5365.6 5159.9 4924 3786 6071.5 5735.7 TRUE FALSE FALSE 6258.038166 5395.150255 5497.992738 5374.714319 4969.790378 5061.483504 5113.920329 4216.982936 5821.2302 5701.583801 1.097596455 0.946254662 0.964292191 0.942670406 0.871650852 0.887732897 0.896929784 0.739616058 1.020984765 1 12.47714702 -5.917127202 0.679313116 1.044148946 0.814192946 0.719308768 0.04882807 0.3455341 0.288210665 0.011457845 0.040599249 1.21E-06 5.917127202 -0.229956001 ALHSFIT(ph)PPT(ph)TPQLR ddPTM_HeLa_CUDC101_4h_R1 2 ALHSFITPPTTPQLR 15 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;J3QR75 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 2 0 ALHS(0.042)FIT(0.958)PPT(0.567)T(0.432)PQLR;ALHS(0.002)FIT(0.998)PPT(0.893)T(0.107)PQLR ; 93.115 0.0057303 36378000 3756.7 2845.3 3143.5 2909.9 2752.88 2523.97 2554.7 2384.5 2931.6 3317.3 TRUE FALSE FALSE 3316.345321 2932.96032 3313.447119 3028.5783 2549.805527 2475.829477 2653.235635 2655.941842 2810.758207 3297.568552 1.005694125 0.88943119 1.004815235 0.9184277 0.773238065 0.750804551 0.804603632 0.8054243 0.852372942 1 11.68718694 -5.917020941 3.029439397 0.992326275 0.781828017 0.620955089 0.057570604 0.064148598 1.190100643 0.005814768 0.011095705 1.21E-06 5.917020941 -0.210498259 KSKLET(ph)T(ph)YR ddPTM_HeLa_CUDC101_4h_R1 4 KSKLETTYR 9 2 Q92628 Q92628 KIAA0232 Uncharacterized protein KIAA0232 2 0 KSKLET(0.973)T(0.744)Y(0.283)R;KSKLET(0.99)T(0.917)Y(0.093)R;KSKLET(0.992)T(0.92)Y(0.089)R;KSKLET(0.993)T(0.924)Y(0.083)R ;;; 80.438 0.0023366 545766000 9938.58 10350.91 10049.07 9286.55 12659.66 10875.75 10671 10985.78 11268.1 10098.25 TRUE FALSE FALSE 8773.594718 10669.80927 10592.35312 9665.295649 11725.7821 10668.31319 11082.58404 12236.35679 10803.62415 10038.18516 0.874022005 1.062922142 1.055205991 0.962852896 1.168117734 1.062773103 1.1040426 1.218980981 1.076252727 1 13.29321084 -5.916545696 0.69774079 0.945124257 1.160677149 0.304607523 0.077696616 0.467626288 0.414305499 0.014912871 0.05197364 1.21E-06 5.916545696 0.215552892 LSPS(ph)PSSR ddPTM_HeLa_CUDC101_4h_R1 6 LSPSPSSR 8 0 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 1 0 LS(0.005)PS(0.986)PS(0.009)SR;LS(0.02)PS(0.649)PS(0.318)S(0.013)R;LS(0.28)PS(0.554)PS(0.159)S(0.006)R;LSPS(0.973)PS(0.027)SR;LS(0.013)PS(0.969)PS(0.018)SR;LSPS(0.965)PS(0.035)SR ;;;;; 169.65 1.87E-05 5062126000 29786.2 23972 24816.7 23297.6 23296.9 22867.5 21631 19981.5 23609.4 24271.5 TRUE FALSE FALSE 26294.70679 24710.54891 26158.36587 24247.77683 21578.3341 22431.34054 22465.31492 22256.11319 22636.21054 24127.13204 1.089839718 1.024180946 1.084188781 1.005000378 0.89435968 0.929714336 0.931122476 0.922451668 0.938205606 1 14.55836881 -5.916293043 4.615356574 1.04474171 0.921601585 0.573824928 0.042893463 0.084279769 3.27851777 0.005393649 0.009958675 1.21E-06 5.916293043 -0.123140125 NVFHIASQK(ac)NFK ddPTM_HeLa_CUDC101_4h_R1 2 NVFHIASQKNFK 12 1 E5RGR5;A0A087WWE7;Q8N0T1-2;Q8N0T1 E5RGR5 C8orf59 Uncharacterized protein C8orf59 0 1 ; NVFHIASQK(1)NFK;NVFHIASQK(1)NFK 122.55 0.0015704 5217000 3410.5 2644.2 1855.93 2284.3 3575.8 2410.8 2233.4 1724.2 1909.17 1878.8 FALSE TRUE FALSE 3010.72636 2725.664668 1956.26719 2377.463628 3312.020358 2364.818007 2319.542986 1920.475959 1830.473205 1867.624814 1.612061661 1.459428386 1.047462625 1.272987813 1.773386353 1.266216849 1.241974817 1.028298588 0.980107563 1 10.86698895 -9.60630978 1.428396771 1.001304771 1.377527523 0.266209602 0.222050771 0.462758457 1.704004882 0.164100913 0.038404306 2.48E-10 9.60630978 0.376222753 DGPSS(ph)APATPTK ddPTM_HeLa_CUDC101_4h_R1 3 DGPSSAPATPTK 12 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 0 DGPS(0.155)S(0.845)APATPTK;DGPS(0.002)S(0.998)APATPTK;DGPS(0.001)S(0.999)APATPTK ;; 202.18 1.45E-16 58214500 15502.9 13665.2 13263.8 12952.6 11525.7 12600.9 10814.7 11415.5 12850.4 14451.7 TRUE FALSE FALSE 13685.67356 14086.20861 13980.88115 13480.86301 10675.47207 12360.55883 11231.8266 12714.99438 12320.70107 14365.74065 0.952660493 0.98054176 0.973209909 0.938403619 0.743120201 0.860419183 0.78184807 0.885091461 0.857644682 1 13.81034475 -5.916195768 5.974836428 0.976192323 0.818720883 0.581566517 0.053410564 0.064411804 3.639531857 0.005376909 0.009828886 1.21E-06 5.916195768 -0.15747144 NVKY(ph)IIDKY(ph)GNHPAFYRYK ddPTM_HeLa_CUDC101_4h_R1 1 NVKYIIDKYGNHPAFYRYK 19 3 Q5SRI9 Q5SRI9 MANEA "Glycoprotein endo-alpha-1,2-mannosidase" 2 0 NVKY(0.999)IIDKY(0.983)GNHPAFY(0.006)RY(0.012)K 47.64 0.0031502 0 1019.9 925.92 977.83 921.04 770.11 887.95 787.18 790.03 977.65 1073.1 TRUE FALSE FALSE 900.3488681 954.4464977 1030.694448 958.6039923 713.3005196 871.0138332 817.5417963 879.9638218 937.3508532 1066.717153 0.844037114 0.894751242 0.966230312 0.898648708 0.668687587 0.816536821 0.766409159 0.824927038 0.878724834 1 10.05896197 -5.914520095 8.168826632 0.924668379 0.77270227 0.606826821 0.056954008 0.154824244 13.0858019 0.010258318 0.018642196 1.22E-06 5.914520095 -0.151966109 TLENQS(ph)HETLER ddPTM_HeLa_CUDC101_4h_R1 1 TLENQSHETLER 12 0 P48681 P48681 NES Nestin 1 0 TLENQS(1)HETLER 103.6 0.0055353 5602700 1542.4 1192.2 1136.3 1098.8 880.26 973.26 1023.4 600.73 1156.7 1144.5 TRUE FALSE FALSE 1361.60221 1228.930269 1197.731815 1143.613813 815.3249735 954.6966871 1062.872881 669.114675 1109.020336 1137.692463 1.196810434 1.080195491 1.052772919 1.005204702 0.716647952 0.839151808 0.93423567 0.58813317 0.974797999 1 10.15189491 -5.913370291 3.893868644 1.089736502 0.786789494 0.641600604 0.102172283 0.107941181 3.166765289 0.015940753 0.029762028 1.22E-06 5.913370291 -0.302947008 NVGSSTGEK(ac)NER ddPTM_HeLa_CUDC101_4h_R1 1 NVGSSTGEKNER 12 1 Q96EB6;B0QZ35;E9PC49 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 0 1 NVGSSTGEK(1)NER 86.313 0.029407 288150 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 GSVSSVS(ph)PKPPSSFK ddPTM_HeLa_CUDC101_4h_R1 2 GSVSSVSPKPPSSFK 15 1 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 GS(0.001)VS(0.015)S(0.435)VS(0.437)PKPPS(0.089)S(0.023)FK;GSVS(0.008)S(0.029)VS(0.95)PKPPS(0.008)S(0.005)FK ; 160.79 0.00030004 41015000 6746.4 6509.8 5693.5 5133.2 5904.5 4879.1 4701.8 4566.8 6494.3 6080.3 TRUE FALSE FALSE 5955.597219 6710.359222 6001.307832 5342.554084 5468.936798 4786.039297 4883.150001 5086.666052 6226.602205 6044.134105 0.985351601 1.110226726 0.992914407 0.883923816 0.904833795 0.791848628 0.807915562 0.841587226 1.030189287 1 12.56131996 -5.91223932 1.579794733 1.003320874 0.819223074 0.804696682 0.043919865 0.130103365 0.652178049 0.007013567 0.015371066 1.22E-06 5.91223932 -0.1840978 NVIFQPVAELK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 NVIFQPVAELKK 12 1 Q01813-2;Q01813;B1APP6;H0Y757 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 0 1 NVIFQPVAELK(1)K 167.18 5.31E-06 486040 1867.2 858.35 473.28 531.24 1537 1255.7 1259.4 1298.8 1248.2 937.21 FALSE TRUE FALSE 1648.329646 884.7947461 498.8669484 552.9062634 1423.618572 1231.749615 1307.97548 1446.650142 1196.748668 931.6354332 1.769286126 0.949722085 0.535474426 0.593479213 1.528085474 1.322136933 1.403956347 1.552807129 1.284567573 1 9.863621701 -13.52136769 0.007593036 8.36E-05 2.401653654 0 0.395822121 239847.6297 147.3494916 25938.77725 20920.81148 3.01E-14 13.52136769 2.401570029 NVIGLQMGTNR ddPTM_HeLa_CUDC101_4h_R1 2 NVIGLQMGTNR 11 0 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 0 0 ; ; 147.73 0.0014377 3050100 2495.3 1612.21 822.67 1720.99 1285.14 1728.7 1145.53 965.49 582.4 385.46 FALSE FALSE TRUE 2202.804717 1661.880279 867.1460286 1791.179411 1190.337783 1695.727928 1189.713476 1075.397479 558.3932255 383.1672668 5.748937625 4.337218816 2.263100489 4.674667087 3.106574819 4.425555299 3.104945487 2.806600595 1.457309311 1 8.58183051 -9.57286199 1.37025068 1.009165533 4.037454545 0.502328645 1.005338933 0.283010834 0.957195261 0.781490153 0.185418298 2.67E-10 9.57286199 3.028289012 RYPSSISSS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 4 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 RYPSSISS(0.218)S(0.782)PQK;RYPSSIS(0.001)S(0.13)S(0.868)PQK;RYPSSISS(0.028)S(0.972)PQK;RYPSSISS(0.235)S(0.765)PQK ;;; 117.08 0.0021192 645381000 14509 8415.1 6504.5 9737.4 6831.9 7232.6 6951.3 5996.1 6445.7 6387.5 TRUE FALSE FALSE 12808.27701 8674.359257 6856.152945 10134.53326 6327.924348 7094.650205 7219.41397 6678.671787 6180.005518 6349.506866 2.017208152 1.366146921 1.079792981 1.596113442 0.996600914 1.117354521 1.137003884 1.051841021 0.973304801 1 12.63242883 -5.910309511 1.246224229 1.468543098 1.076802288 0.009683108 0.317988563 0.682903386 2.108032149 0.066221475 0.16072963 1.23E-06 5.910309511 -0.39174081 KELS(ph)PAGSISK ddPTM_HeLa_CUDC101_4h_R1 3 KELSPAGSISK 11 1 O95453;O95453-3;O95453-2;A0A494C0W0;A0A494C0K5;A0A494C0Q6;O95453-4 O95453 PARN Poly(A)-specific ribonuclease PARN 1 0 KELS(1)PAGSISK;KELS(0.996)PAGS(0.002)IS(0.001)K;KELS(1)PAGSISK ;; 109.95 0.014333 203758000 10618.8 8433.6 8357.4 8518.8 8877.5 7680.3 7131.7 6996.2 9115.6 9838.1 TRUE FALSE FALSE 9374.080361 8693.42922 8809.226324 8866.233485 8222.624511 7533.811074 7406.772058 7792.619128 8739.85111 9779.582544 0.958535839 0.888936637 0.900777337 0.906606539 0.840795042 0.770361213 0.757370984 0.796825334 0.893683454 1 13.25555717 -5.906836786 0.408942004 0.997045828 0.720996929 0.716315482 0.040122521 0.338623615 0.091555378 0.008933921 0.038531287 1.24E-06 5.906836786 -0.276048899 NVLFSHLDDNER ddPTM_HeLa_CUDC101_4h_R1 2 NVLFSHLDDNER 12 0 P10644;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EPB2;P10644-2 P10644 PRKAR1A "cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed" 0 0 ; ; 163.71 6.51E-05 19338700 9777.6 7621 6303.8 7461.1 7750 7625.5 6994.4 6037.4 6632 10669.1 FALSE FALSE TRUE 8631.48455 7855.793977 6644.602496 7765.395908 7178.29794 7480.056292 7264.176351 6724.673212 6358.626153 10605.63972 0.813857983 0.740718541 0.626515955 0.732194956 0.676837808 0.705290439 0.684935237 0.634065779 0.599551401 1 13.37254402 -8.063072661 0.493041585 1.00461597 0.664217687 0 0.126973737 0.166424631 0.095738453 0.023442203 0.013390501 8.65E-09 8.063072661 -0.340398283 GPSLDIDT(ph)PDVNIEGPEGK ddPTM_HeLa_CUDC101_4h_R1 2 GPSLDIDTPDVNIEGPEGK 19 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GPS(0.005)LDIDT(0.995)PDVNIEGPEGK;GPSLDIDT(1)PDVNIEGPEGK ; 139.74 0.00020894 69762000 13189.8 6645.9 7706.6 7995.6 8045 6830.3 5227.5 5042.7 7014.2 8891.7 TRUE FALSE FALSE 11643.71164 6850.652302 8123.242107 8321.695128 7451.536378 6700.023408 5429.126426 5616.740585 6725.071707 8838.811773 1.31733902 0.775064848 0.919042323 0.941494778 0.843047297 0.758023089 0.614237136 0.63546331 0.760856988 1 13.10963672 -5.906378034 0.659088591 1.135639104 0.611887237 0.208684919 0.1727914 0.462174543 0.358867008 0.033621504 0.122745263 1.24E-06 5.906378034 -0.523751868 EGAKDIDISS(ph)PEFK ddPTM_HeLa_CUDC101_4h_R1 1 EGAKDIDISSPEFK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 EGAKDIDIS(0.028)S(0.972)PEFK 142.54 0.002239 10092000 1192.4 1820 1570.9 1789.6 4532 2720.6 2692.6 4296.8 2128 1400.3 TRUE FALSE FALSE 1052.62868 1876.072043 1655.827606 1862.587623 4197.683389 2668.709088 2796.454484 4785.930344 2040.282939 1391.970953 0.756214544 1.347781028 1.189556148 1.338093743 3.015640074 1.917216075 2.008989108 3.438240096 1.465751088 1 10.44291339 -5.906267317 4.775480376 0.956140927 2.499620089 0.668788584 0.475394578 0.080901601 3.188854967 0.065076373 0.120135279 1.24E-06 5.906267317 1.543479161 GEPAAAAAPEAGAS(ph)PVEK ddPTM_HeLa_CUDC101_4h_R1 2 GEPAAAAAPEAGASPVEK 18 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEPAAAAAPEAGAS(1)PVEK;GEPAAAAAPEAGAS(1)PVEK ; 221.81 5.45E-33 305530000 19158 14506.7 13582.1 14858.8 10947.8 12159 11868.3 7966.9 15205.5 15299.2 TRUE FALSE FALSE 16912.32828 14953.63423 14316.38941 15464.80609 10140.20261 11927.08733 12326.06431 8873.819693 14578.72285 15208.19968 1.112053277 0.983261303 0.941359905 1.016872899 0.666758908 0.784253731 0.810488064 0.583489162 0.958609379 1 13.89256176 -5.903233955 1.368250416 1.046916804 0.711003995 0.695522961 0.088054594 0.152962303 0.572216511 0.013600321 0.031730908 1.25E-06 5.903233955 -0.335912809 NVPEK(ac)HTR ddPTM_HeLa_CUDC101_4h_R1 2 NVPEKHTR 8 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 0 1 ; NVPEK(1)HTR;NVPEK(1)HTR 114.89 0.0031158 1662200 1644.76 1249.52 2113.94 2151.57 1830.83 2063.41 1667.87 1234.56 1149.59 1007.12 FALSE TRUE FALSE 1451.963726 1288.01623 2228.225991 2239.320324 1695.773318 2024.053892 1732.200305 1375.09732 1102.203414 1001.129605 1.450325431 1.286562922 2.225711815 2.23679363 1.693859925 2.02177009 1.73024581 1.373545755 1.100959763 1 9.967413041 -7.60701606 0.847721707 1.106437642 1.86029555 0.526212558 0.290421268 0.305180308 0.462136198 0.081040609 0.078559111 2.47E-08 7.60701606 0.753857908 YEDDGIS(ph)DDEIEGK ddPTM_HeLa_CUDC101_4h_R1 2 YEDDGISDDEIEGK 14 0 I3VM54;Q9Y2K7-3;Q9Y2K7 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 YEDDGIS(1)DDEIEGK;YEDDGIS(1)DDEIEGK ; 208.47 1.19E-23 14196000 6577.5 5150.1 5357.3 5179.9 4872.1 5538.8 4724.3 3802.5 5077.9 5377.9 TRUE FALSE FALSE 5806.495421 5308.768477 5646.931843 5391.158711 4512.69489 5433.156618 4906.517834 4235.36123 4868.586813 5345.912012 1.08615619 0.993051974 1.056308415 1.008463794 0.844139387 1.016319873 0.917807443 0.79226168 0.910712111 1 12.38422038 -5.903110671 5.942656962 1.038198476 0.903846465 0.351141983 0.071645548 0.127684092 6.575885399 0.009044795 0.016549404 1.25E-06 5.903110671 -0.13435201 NVPFK(ac)IVR ddPTM_HeLa_CUDC101_4h_R1 1 NVPFKIVR 8 1 P38646;D6RJI2;A0A3B3ITI4 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 1 NVPFK(1)IVR 91.065 0.027317 339000 181.71 152.31 0 171.76 169.91 140.39 62.814 0 64.853 0 FALSE TRUE FALSE 160.4102293 157.0024906 0 178.7651152 157.3760778 137.7122947 65.23675702 0 62.17973189 0 0 SVPTS(ph)TVFYPSDGVATEK ddPTM_HeLa_CUDC101_4h_R1 2 SVPTSTVFYPSDGVATEK 18 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 1 0 SVPT(0.124)S(0.832)T(0.039)VFY(0.004)PSDGVATEK;SVPT(0.02)S(0.874)T(0.106)VFYPSDGVATEK ; 171.56 3.50E-12 5675600 2273.36 2067.62 1662.26 1958.41 2396.67 2492.95 2089.69 1607.92 1477.34 1969.18 TRUE FALSE FALSE 2006.880187 2131.320921 1752.126804 2038.282425 2219.872429 2445.401132 2170.290043 1790.959113 1416.44342 1957.46723 1.025243313 1.088815633 0.89509892 1.041285593 1.134053431 1.24926798 1.108723564 0.914936958 0.723610285 1 10.93477244 -5.902291918 5.384081503 1.009573586 1.111970053 0.17426804 0.126406856 0.236015922 10.72881061 0.012788313 0.023485667 1.25E-06 5.902291918 0.102396467 NVPHEDICEDSDIDGDYR ddPTM_HeLa_CUDC101_4h_R1 2 NVPHEDICEDSDIDGDYR 18 0 O00629 O00629 KPNA4 Importin subunit alpha-3 0 0 ; ; 208.85 5.29E-24 57625000 5824.5 5085.5 4910.5 4456.8 5653.6 4991.6 4869.4 4613.6 5521.3 5132.5 FALSE FALSE TRUE 5141.760939 5242.178227 5175.976483 4638.567568 5236.545192 4896.393547 5057.214389 5138.793575 5293.709677 5101.971662 1.007798804 1.027480859 1.014505142 0.909171566 1.026376769 0.959706143 0.991227456 1.007217193 1.03758116 1 12.31683917 NVPNWHR ddPTM_HeLa_CUDC101_4h_R1 2 NVPNWHR 7 0 F5H018;B5MDF5;J3KQE5;P62826;B4DV51 F5H018 RAN GTP-binding nuclear protein Ran 0 0 ; ; 114.02 0.0002559 53298000 12021.1 10916.8 10757.5 9920.6 10225.8 10198.5 9946.5 10158.7 10840 10403.1 FALSE FALSE TRUE 10612.00488 11253.13367 11339.08299 10325.20495 9471.463107 10003.9806 10330.13984 11315.12535 10393.17061 10341.2219 1.026184815 1.088182207 1.096493538 0.998451155 0.915894002 0.967388642 0.998928361 1.094176825 1.00502346 1 13.33611904 -6.01727256 24.89209609 1.026271322 0.988114103 0.136451765 0.0518819 1319.010617 1900874.556 0.00830926 0.013990712 9.61E-07 6.01727256 -0.038157219 DEEPSGWEEPS(ph)PQSISR ddPTM_HeLa_CUDC101_4h_R1 2 DEEPSGWEEPSPQSISR 17 0 Q9UPQ9-1;Q9UPQ9;H0Y720 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 DEEPSGWEEPS(0.984)PQS(0.015)IS(0.001)R;DEEPSGWEEPS(0.978)PQS(0.022)ISR ; 178.51 1.11E-07 18431100 3287 2612.32 2608.9 2580.5 2362.4 2326.43 2121.22 1970.37 2755 2852.6 TRUE FALSE FALSE 2901.702843 2692.802483 2749.945025 2685.743944 2188.130459 2282.057224 2203.036166 2194.668956 2641.437734 2835.632608 1.023299998 0.949630243 0.969781846 0.947141014 0.771655133 0.804778876 0.776911706 0.773960967 0.931516208 1 11.46945491 -5.90165868 2.03114676 1.004059466 0.778471939 0.869323871 0.034685055 0.054856339 0.457981859 0.004237829 0.008693727 1.25E-06 5.90165868 -0.225587527 NVPQEESLEDSDVDADFK ddPTM_HeLa_CUDC101_4h_R1 3 NVPQEESLEDSDVDADFK 18 0 O00505 O00505 KPNA3 Importin subunit alpha-4 0 0 ;; ;; 194.67 7.28E-16 22917900 8836.2 8033.3 8019.2 7391.6 8552.1 8253.4 7628.5 7901.2 8508.4 8342 FALSE FALSE TRUE 7800.434031 8280.796451 8452.742209 7693.061397 7921.228621 8095.980146 7922.7338 8800.64067 8157.680151 8292.381413 0.940674776 0.998602939 1.019338328 0.927726429 0.955241712 0.976315457 0.955423226 1.061292315 0.983756022 1 13.01757076 -4.254913939 24.61334783 0.971788585 1.061292366 0.486465864 0.027185936 438.9279187 1655536.966 0.004197132 0.053319848 5.56E-05 4.254913939 0.089503781 NVQQTVSAK(ac)GPPEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 NVQQTVSAKGPPEKR 15 2 G3V4A5;A0A087WYL7;O75586;O75586-2 G3V4A5 MED6 Mediator of RNA polymerase II transcription subunit 6 0 2 NVQQTVSAK(1)GPPEK(1)R 217.19 5.04E-62 0 321.88 543.93 706.41 593.19 637.4 485.95 601.31 761.02 464.48 628.99 FALSE TRUE FALSE 284.1497143 560.6878386 744.6006614 617.3828522 590.3802719 476.6813134 624.5027281 847.6514407 445.3339378 625.2487395 0.454458676 0.896743653 1.190887105 0.987419587 0.944232646 0.762386684 0.998806857 1.355702758 0.712250837 1 9.288286434 -7.004282392 24.46106326 0.738868413 1.020782666 0.353969795 0.191080744 160.0692964 914325.2838 0.040061567 0.051932316 9.90E-08 7.004282392 0.281914253 MT(ph)ALAQDFAVGLGPR ddPTM_HeLa_CUDC101_4h_R1 2 MTALAQDFAVGLGPR 15 0 P50416-2;P50416 P50416-2 CPT1A "Carnitine O-palmitoyltransferase 1, liver isoform" 1 0 MT(1)ALAQDFAVGLGPR;MT(1)ALAQDFAVGLGPR ; 73.735 0.025976 36853000 6165.4 8836.9 7188.5 9127.3 14490.9 13662.4 12703.3 7869.9 13641.9 11446.3 TRUE FALSE FALSE 5442.701158 9109.154415 7577.132054 9499.550746 13421.93518 13401.81248 13193.27054 8765.777605 13079.57511 11378.2169 0.478343945 0.800578377 0.665933171 0.83488923 1.179616745 1.177848217 1.159520042 0.770399939 1.149527665 1 13.47398687 -5.899495769 5.036982504 0.745865768 1.084032265 0.220988187 0.207707086 0.183300912 7.589544737 0.032545238 0.059967936 1.26E-06 5.899495769 0.338166497 TET(ph)PPPLASLNVSK ddPTM_HeLa_CUDC101_4h_R1 2 TETPPPLASLNVSK 14 0 K7ELG9;Q3MHD2;Q3MHD2-2 K7ELG9 LSM12 Protein LSM12 homolog 1 0 T(0.034)ET(0.963)PPPLAS(0.002)LNVSK;T(0.23)ET(0.77)PPPLASLNVSK ; 144.88 0.0018358 138042000 5025.3 4622.9 3694.8 3795.6 3484.6 3597.8 2810 2627.7 3833.7 4629.2 TRUE FALSE FALSE 4436.241952 4765.32607 3894.552064 3950.400974 3227.548 3529.177959 2918.382641 2926.826746 3675.673263 4601.665313 0.964051414 1.03556555 0.846335359 0.858472033 0.70138695 0.766934951 0.634201413 0.636036423 0.798770231 1 12.16794034 -5.898789036 0.799512233 0.990205297 0.637365252 0.691780954 0.075983533 0.135426494 0.162133347 0.007983606 0.025827 1.26E-06 5.898789036 -0.352840044 TLEFLMRHLVHMASFS(ph)AQTNMHAR ddPTM_HeLa_CUDC101_4h_R1 1 TLEFLMRHLVHMASFSAQTNMHAR 24 1 A0A0A0MRJ9;Q7Z6I6-4;Q7Z6I6-2;Q7Z6I6 A0A0A0MRJ9 ARHGAP30 Rho GTPase-activating protein 30 1 0 TLEFLMRHLVHMAS(0.059)FS(0.815)AQT(0.127)NMHAR 44.529 0.0026768 0 1396.1 1243.7 1620.9 1569.7 2520.2 2223.3 1594.5 1777.5 2866.7 1948.5 TRUE FALSE FALSE 1232.451274 1282.016923 1708.530757 1633.719151 2334.289867 2180.894257 1656.000399 1979.843415 2748.533413 1936.910235 0.636297569 0.661887629 0.88209083 0.843466631 1.205161615 1.12596558 0.854970132 1.022165808 1.419029836 1 10.91954138 -5.89848996 8.312028808 0.8146184 1.042869967 0 0.229867637 0.247322619 18.26596859 0.025018133 0.045462607 1.26E-06 5.89848996 0.228251567 S(ph)APASPTHPGLMSPR ddPTM_HeLa_CUDC101_4h_R1 1 SAPASPTHPGLMSPR 15 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 1 0 S(0.974)APAS(0.025)PTHPGLMSPR 192.4 9.81E-12 9112000 341.35 511.43 381.2 418.77 755.47 697.29 589.45 470.11 467.68 397.75 TRUE FALSE FALSE 301.3374705 527.1865521 401.8088251 435.8492507 699.7404832 683.990355 612.185284 523.6254221 448.4020324 395.3841653 0.762138439 1.33335272 1.016249158 1.102343718 1.769773665 1.729938665 1.548330302 1.32434596 1.134092035 1 8.627111284 -5.898367242 4.483572223 0.938398224 1.597531168 0.631245722 0.190826017 0.089289525 3.160513996 0.030080261 0.055802932 1.26E-06 5.898367242 0.659132944 MQYAPNTQVEILPQGHES(ph)PIFK ddPTM_HeLa_CUDC101_4h_R1 1 MQYAPNTQVEILPQGHESPIFK 22 0 P40121-2;P40121;H7C0X8 P40121-2 CAPG Macrophage-capping protein 1 0 MQYAPNTQVEILPQGHES(1)PIFK 98.627 0.0001204 16696000 2111.7 1757.6 1941.8 1784.2 1750.9 1642.4 1606.2 1694 1535.6 1975.2 TRUE FALSE FALSE 1864.169727 1811.749573 2046.779582 1856.967388 1621.739595 1611.073956 1668.151672 1886.838113 1472.301918 1963.451423 0.949435115 0.922737151 1.042439634 0.945766912 0.825963697 0.82053161 0.849601703 0.960980288 0.749854008 1 10.93917619 -5.897980928 5.435210248 0.975914956 0.860767217 0.036419427 0.085288386 0.114790467 5.195801027 0.006987962 0.012832832 1.26E-06 5.897980928 -0.115147739 S(ph)SEDLAGPLPSSVSSSSTTSSKPK ddPTM_HeLa_CUDC101_4h_R1 2 SSEDLAGPLPSSVSSSSTTSSKPK 24 1 Q9NRF2-2;Q9NRF2-3;Q9NRF2 Q9NRF2-2 SH2B1 SH2B adapter protein 1 1 0 S(0.809)S(0.191)EDLAGPLPSSVSSSSTTSSKPK;S(0.801)S(0.199)EDLAGPLPSSVSSSSTTSSKPK ; 162.35 2.01E-09 305690000 12446 9977 9378.7 9800.7 10225.4 9615.1 9325.4 8200.8 10430.8 9818.7 TRUE FALSE FALSE 10987.09875 10284.37954 9885.740891 10200.41491 9471.092614 9431.707987 9685.083802 9134.345923 10000.83801 9760.297936 1.125692967 1.053695247 1.012852369 1.045092576 0.970369212 0.966334025 0.992293869 0.93586753 1.024644747 1 13.25270947 -5.897420586 1.296950962 1.058982482 0.963200304 0.507435527 0.03582949 0.333316924 1.11733113 0.008113146 0.019480873 1.27E-06 5.897420586 -0.095782178 NVSIGIVGK ddPTM_HeLa_CUDC101_4h_R1 1 NVSIGIVGK 9 0 P25786;P25786-2;F5GX11 P25786 PSMA1 Proteasome subunit alpha type-1 0 0 114.5 0.029388 5062900 2996.6 2587.6 2683.5 2639.3 2977 2620.8 2465.4 2410.3 2470.7 2671.7 FALSE FALSE TRUE 2645.343091 2667.320889 2828.578127 2746.942062 2757.392641 2570.812607 2560.491304 2684.678809 2368.8567 2655.80861 0.996059385 1.004334755 1.065053452 1.034314767 1.038249756 0.967996187 0.964109874 1.010870587 0.891953092 1 11.37493547 -5.236262054 24.67546937 1.008819812 0.979303981 0.047099112 0.04466775 875.8556119 858394.618 0.003982816 0.010148414 5.80E-06 5.236262054 -0.029515831 PSS(ph)SPVIFAGGQDR ddPTM_HeLa_CUDC101_4h_R1 2 PSSSPVIFAGGQDR 14 0 Q15366-2;Q15366;Q15366-3;Q15366-6;H3BSS4 Q15366-2 PCBP2 Poly(rC)-binding protein 2 1 0 PS(0.001)S(0.647)S(0.351)PVIFAGGQDR;PS(0.007)S(0.497)S(0.497)PVIFAGGQDR ; 219.84 1.34E-32 454770000 8328.3 6112.3 6147.4 5963.6 5283.6 4673.3 4668.2 3466.7 5622.3 7332.1 TRUE FALSE FALSE 7352.069299 6300.612718 6479.747039 6206.821385 4893.839354 4584.164589 4848.254038 3861.335115 5390.546414 7288.488343 1.008723476 0.864460835 0.88903854 0.851592414 0.671447785 0.628959583 0.665193358 0.529785455 0.739597316 1 12.83140391 -5.89514857 0.648021135 1.008715439 0.551562851 0.619433979 0.094898815 0.140315711 0.104479499 0.008687722 0.032421576 1.27E-06 5.89514857 -0.457152589 TLDS(ph)DEERPRPAPPDWSHMR ddPTM_HeLa_CUDC101_4h_R1 2 TLDSDEERPRPAPPDWSHMR 20 2 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 T(0.061)LDS(0.939)DEERPRPAPPDWSHMR;T(0.015)LDS(0.985)DEERPRPAPPDWSHMR ; 83.964 0.0024281 293235000 2420.12 2287.04 2257.77 2347.2 2936.5 3033.7 2464.8 2392.85 3094.2 2486.1 TRUE FALSE FALSE 2136.437202 2357.500992 2379.831876 2442.928961 2719.880245 2975.837227 2559.868162 2665.242372 2966.655766 2471.312567 0.864494937 0.953946912 0.962982954 0.988514765 1.100581239 1.204152509 1.035833426 1.078472391 1.200437292 1 11.27106178 -5.894859031 2.673728409 0.938194306 1.108285471 0.112281284 0.097110342 0.14195808 2.056587463 0.009694107 0.018968398 1.27E-06 5.894859031 0.170091165 TTSFAES(ph)CKPVQQPSAFGSMK ddPTM_HeLa_CUDC101_4h_R1 1 TTSFAESCKPVQQPSAFGSMK 21 1 P49841;P49841-2;A0A3B3ITW1 P49841 GSK3B Glycogen synthase kinase-3 beta 1 0 T(0.006)T(0.002)S(0.05)FAES(0.942)CKPVQQPSAFGSMK 77.031 0.0014521 101830000 2136.9 2034.9 2438.7 2131.7 3174.3 3010.1 3402.4 2763.8 1787.3 1734.8 TRUE FALSE FALSE 1886.415821 2097.592857 2570.543499 2218.63994 2940.138213 2952.687358 3533.631708 3078.41982 1713.626738 1724.481332 1.093903301 1.216361591 1.490618339 1.286554918 1.704940586 1.71221764 2.049098266 1.785127947 0.993705589 1 10.7519468 -5.89445036 0.534449919 1.013529628 2.024558039 0.892244342 0.114780735 0.223792987 0.10751885 0.025639819 0.105830895 1.28E-06 5.89445036 1.011028411 GS(ph)PETNHLIR ddPTM_HeLa_CUDC101_4h_R1 2 GSPETNHLIR 10 0 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 0 GS(1)PETNHLIR;GS(1)PETNHLIR ; 152.38 0.00021087 41940000 3177.2 3325.7 3061.6 2641.6 3245.6 2559.14 2320.13 722.31 3085.5 2918 TRUE FALSE FALSE 2804.773432 3428.160875 3227.119357 2749.335866 3006.178554 2510.328668 2409.618191 804.5348507 2958.314384 2900.643606 0.966948655 1.181862145 1.112552866 0.947836494 1.036383287 0.865438506 0.830718461 0.277364254 1.019882063 1 11.50215733 -4.217818778 1.584737958 1.006156848 4.10E-18 0.888348432 0.079236706 0.292215405 0.627703665 0.011815726 0.467286658 6.06E-05 4.217818778 -1.006156848 down GNVFSSPT(ph)AAGTPNKETAGLK ddPTM_HeLa_CUDC101_4h_R1 1 GNVFSSPTAAGTPNKETAGLK 21 1 E9PGZ1;Q05682-5;Q05682-4;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682 E9PGZ1;E7EX44;Q05682 CALD1 Caldesmon 1 0 GNVFS(0.016)S(0.313)PT(0.389)AAGT(0.269)PNKET(0.012)AGLK 77.899 0.0027011 50050000 2012.7 2050 1941.7 1725.6 2232.9 1924.8 1702.1 675.46 2191.8 2087.8 TRUE FALSE FALSE 1776.774357 2113.15807 2046.674175 1795.977427 2068.183416 1888.087647 1767.750567 752.3516361 2101.453076 2075.381673 0.856119325 1.018202145 0.986167606 0.865372115 0.996531598 0.909754419 0.85177131 0.362512422 1.012562221 1 11.01916096 -4.217119591 2.496168645 0.939350367 0.194904182 0.901388564 0.058398067 0.151004168 1.051369521 0.009004814 0.248847171 6.07E-05 4.217119591 -0.744446185 down S(ph)LEDVTAEYIHK ddPTM_HeLa_CUDC101_4h_R1 2 SLEDVTAEYIHK 12 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3 RAI14 Ankycorbin 1 0 S(0.995)LEDVT(0.005)AEYIHK;S(0.999)LEDVT(0.001)AEYIHK ; 175.01 3.31E-07 25110000 9803.7 9571.5 8855.1 8336.2 9248.2 8743.3 8192.1 7462.1 10078.4 8811.3 TRUE FALSE FALSE 8654.525147 9866.38657 9333.833491 8676.186268 8565.978711 8576.53612 8508.072041 8311.555301 9662.964086 8758.889996 0.988084695 1.126442571 1.065641137 0.990557739 0.977975373 0.979180709 0.971364185 0.948927924 1.103217884 1 13.09653233 -5.890276722 3.807218379 1.011623271 0.970100739 0.221893823 0.050854212 0.359196473 9.884142554 0.007167121 0.013487829 1.29E-06 5.890276722 -0.041522532 VDDLSS(ph)SPTSSPER ddPTM_HeLa_CUDC101_4h_R1 2 VDDLSSSPTSSPER 14 0 Q96JK2-2;Q96JK2-3;Q96JK2 Q96JK2-2 DCAF5 DDB1- and CUL4-associated factor 5 1 0 VDDLS(0.096)S(0.45)S(0.45)PT(0.002)SSPER;VDDLS(0.075)S(0.415)S(0.415)PT(0.075)S(0.009)S(0.009)PER ; 109.99 0.0035773 9591100 4940.5 4154.9 4268.5 4079 4257.8 3357.8 3621.7 3998 4319.7 4717.4 TRUE FALSE FALSE 4361.382079 4282.907544 4499.268022 4245.359251 3943.710577 3293.755559 3761.390182 4453.11616 4141.640138 4689.340695 0.930062958 0.913328296 0.95946708 0.905321137 0.84099468 0.702392036 0.80211493 0.949625214 0.883203078 1 12.19516938 -5.889866425 2.420240216 0.960631124 0.81127019 0.381771387 0.064940274 0.169881119 2.019800038 0.009623448 0.019171927 1.29E-06 5.889866425 -0.149360934 VS(ph)PGQAAPAMARPR ddPTM_HeLa_CUDC101_4h_R1 1 VSPGQAAPAMARPR 14 1 Q96HA7-2;Q96HA7 Q96HA7-2 TONSL Tonsoku-like protein 1 0 VS(1)PGQAAPAMARPR 91.932 0.0071645 16721000 1197.7 1036.9 967.65 1032.5 1250.8 1190.6 1110.7 939.04 869.22 1063.3 TRUE FALSE FALSE 1057.307422 1068.84566 1019.964086 1074.609813 1158.530976 1167.891289 1153.540071 1045.936518 833.3903837 1056.975444 1.000314082 1.011230361 0.96498371 1.016683802 1.096081259 1.104937012 1.091359385 0.989556118 0.788467119 1 10.04572615 -5.887933487 5.357209529 0.998470597 1.074057334 0.272566448 0.073700977 0.112857094 4.903568498 0.004501331 0.0082785 1.29E-06 5.887933487 0.075586737 KSVSS(ph)PTSSNTPTPTK ddPTM_HeLa_CUDC101_4h_R1 1 KSVSSPTSSNTPTPTK 16 1 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 KS(0.248)VS(0.248)S(0.391)PT(0.084)S(0.029)SNTPTPTK 84.159 0.0067304 22583000 2309.7 2591.5 2143.3 2995.9 3460.4 5176.8 3914.8 3154.2 1907 2168.6 TRUE FALSE FALSE 2038.960467 2671.341043 2259.173281 3118.085751 3205.133186 5078.061165 4065.795147 3513.261378 1828.392653 2155.701071 0.945845644 1.239198273 1.047999332 1.446436982 1.486817087 2.355642549 1.886066302 1.629753506 0.848166138 1 11.07394142 -5.887594158 1.38838215 0.993360627 1.941495501 0.779853879 0.211463361 0.12632103 0.487239195 0.031910303 0.074731485 1.30E-06 5.887594158 0.948134874 NVTELNEPLSNEER ddPTM_HeLa_CUDC101_4h_R1 2 NVTELNEPLSNEER 14 0 P61981 P61981 YWHAG "14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed" 0 0 ; ; 240.18 4.24E-43 61448000 4034.3 3243.7 3832.3 3268.6 4148.6 3308.7 3124.6 3224.9 3516.6 4030 FALSE FALSE TRUE 3561.40547 3343.634552 4039.48573 3401.907636 3842.566043 3245.59206 3245.116869 3592.009581 3371.64426 4006.029381 0.88901132 0.834650532 1.008351499 0.849196876 0.959195672 0.810176799 0.81005818 0.896650833 0.841642419 1 11.96795729 -13.52287875 0.151136286 1.45409781 0.838226633 0 0.076855212 49.95558113 0.513472411 6.719817031 0.131062506 3.00E-14 13.52287875 -0.615871177 AGT(ph)EDEEEEEEGRR ddPTM_HeLa_CUDC101_4h_R1 2 AGTEDEEEEEEGRR 14 1 O95456;O95456-2;F8WBH7 O95456 PSMG1 Proteasome assembly chaperone 1 1 0 AGT(1)EDEEEEEEGRR;AGT(1)EDEEEEEEGRR ; 173.19 3.50E-06 77214000 5233.6 4506.7 4891.4 4192.4 3633.8 3496.1 3287.4 3255.9 4910.6 4939.3 TRUE FALSE FALSE 4620.125342 4645.546085 5155.84388 4363.384193 3365.741814 3429.417717 3414.196119 3626.538495 4708.18299 4909.920824 0.940977565 0.946154989 1.05008697 0.888687282 0.685498185 0.69846701 0.695366838 0.738614455 0.958912202 1 12.26148404 -5.887303273 3.826699503 0.974343968 0.703264787 0.938549424 0.033138036 0.040650314 1.125901525 0.005305946 0.009988491 1.30E-06 5.887303273 -0.271079181 LTLS(ph)EGHPETPVDGDLGK ddPTM_HeLa_CUDC101_4h_R1 1 LTLSEGHPETPVDGDLGK 18 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 LT(0.473)LS(0.527)EGHPETPVDGDLGK 108.25 0.00037086 5015600 1488.7 1666.1 1436.7 1362.3 1240.9 1214.6 1185.4 1168.6 1402.9 1593.5 TRUE FALSE FALSE 1314.196843 1717.430566 1514.372348 1417.860482 1149.361279 1191.433529 1231.121275 1301.6287 1345.071868 1584.021791 0.82965831 1.084221553 0.956029997 0.895101627 0.725596886 0.752157284 0.777212335 0.821723986 0.849149851 1 10.62937647 -5.886948013 4.951553074 0.934589433 0.769190582 0.572327174 0.071205933 0.141487578 5.594577201 0.012228068 0.022584282 1.30E-06 5.886948013 -0.165398851 VLKSS(ph)Y(ph)SRSSAVK ddPTM_HeLa_CUDC101_4h_R1 1 VLKSSYSRSSAVK 13 2 G5E9L9;Q8N568-2;Q8N568;A0A0U1RR70;Q8N568-3 G5E9L9 DCLK2 Serine/threonine-protein kinase DCLK2 2 0 VLKS(0.004)S(0.565)Y(0.685)S(0.585)RS(0.131)S(0.03)AVK 96.745 0.00064035 0 1271.9 905.54 819.75 827.86 673.9 669.69 707.42 884.82 977.39 603.63 TRUE FALSE FALSE 1122.80981 933.4386141 864.0681646 861.6237091 624.1877396 656.916779 734.7054264 985.5443322 937.1015705 600.0395819 1.871226239 1.555628399 1.44001861 1.435944786 1.040244275 1.094789075 1.224428269 1.642465534 1.561732924 1 9.228913862 -5.886677426 20.18373681 1.436969627 1.237500662 0.151682489 0.251519474 5.503679472 955.2275257 0.052746183 0.095610969 1.30E-06 5.886677426 -0.199468965 VNFPENGFLS(ph)PDK ddPTM_HeLa_CUDC101_4h_R1 2 VNFPENGFLSPDK 13 0 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 1 0 VNFPENGFLS(1)PDK;VNFPENGFLS(1)PDK ; 87.932 0.0032577 9144500 2879.48 2767.58 2218.78 2211.35 1855.72 2019.16 1980.79 1581.33 2308.84 2206.26 TRUE FALSE FALSE 2541.951719 2852.845859 2338.733958 2301.538411 1718.827233 1980.647887 2057.189734 1761.342215 2213.668638 2193.137067 1.159048268 1.300806002 1.066387502 1.049427528 0.783729963 0.903111765 0.938012386 0.803115428 1.009361736 1 11.09878027 -5.886574111 5.426752668 1.095338592 0.866953072 0.632650661 0.090197585 0.125052443 5.504287401 0.015082351 0.02772459 1.30E-06 5.886574111 -0.22838552 LTVENS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 LTVENSPK 8 0 F8VVL1;O43583 F8VVL1 DENR Density-regulated protein 1 0 LT(0.008)VENS(0.992)PK;LT(0.323)VENS(0.677)PK;LT(0.238)VENS(0.762)PK ;; 102.53 0.016525 544460000 23650.4 20254.3 19667.4 18162.5 15700.5 17263.7 15835.8 14036.5 19723.1 18033.2 TRUE FALSE FALSE 20878.13596 20878.31098 20730.67913 18903.24526 14542.30539 16934.42369 16446.59211 15634.35842 18910.10547 17925.93772 1.164688636 1.164698399 1.156462744 1.054519186 0.811243775 0.944688303 0.917474576 0.872164049 1.054901884 1 14.12976097 -5.885781678 6.042347367 1.09345336 0.893663154 0.757860242 0.05916644 0.109840742 5.439705422 0.01154018 0.021121926 1.30E-06 5.885781678 -0.199790206 S(ph)PGNTSQPPAFFSK ddPTM_HeLa_CUDC101_4h_R1 3 SPGNTSQPPAFFSK 14 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;Q9Y618-2;H7C184 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 S(0.984)PGNT(0.015)S(0.001)QPPAFFSK;S(1)PGNTSQPPAFFSK;S(1)PGNTSQPPAFFSK ;; 161.08 4.32E-05 492820000 11797.2 10221.6 10558.8 9851.8 10036.9 9203.1 9369.18 8530.9 11092.8 10878 TRUE FALSE FALSE 10414.3501 10536.51538 11129.64067 10253.59899 9296.497883 9027.566201 9730.552411 9502.023173 10635.55009 10813.29717 0.963105881 0.974403571 1.029255045 0.948239822 0.859728327 0.834857866 0.899869139 0.878735045 0.983562175 1 13.40051887 -5.885351436 4.08860091 0.984735462 0.868315202 0.862171155 0.02289522 0.064492405 1.973704906 0.003713187 0.006953105 1.30E-06 5.885351436 -0.11642026 SHS(ph)SSEAYEPR ddPTM_HeLa_CUDC101_4h_R1 2 SHSSSEAYEPR 11 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 S(0.156)HS(0.73)S(0.109)S(0.004)EAYEPR;SHS(0.99)S(0.009)SEAYEPR ; 128.85 9.01E-05 12919000 1327.38 1142.68 1091.21 1292.178 1693.48 1520.34 1500.94 1302.42 1474.08 1443.55 TRUE FALSE FALSE 1171.786529 1177.884616 1150.204113 1344.878604 1568.555354 1491.342048 1558.831759 1450.682228 1413.317798 1434.9637 0.816596635 0.820846281 0.801556244 0.937221341 1.093097584 1.039289041 1.086321388 1.010953955 0.984915366 1 10.48679853 -5.884529437 5.018346947 0.894202038 1.057464585 0.598562792 0.066547841 0.147059633 5.897236105 0.012574956 0.023213608 1.30E-06 5.884529437 0.163262547 GAS(ph)QAGMTGYGMPR ddPTM_HeLa_CUDC101_4h_R1 2 GASQAGMTGYGMPR 14 0 P37802;P37802-2;C9J5W6;Q9UI15 P37802 TAGLN2;TAGLN3 Transgelin-2;Transgelin-3 1 0 GAS(0.985)QAGMT(0.015)GYGMPR;GAS(0.995)QAGMT(0.004)GYGMPR ; 101.78 0.006756 27312000 1024.69 881.6 998.19 1048.18 1268.34 1282.73 1223.27 1201.17 1108.44 936.3 TRUE FALSE FALSE 904.5773915 908.761051 1052.155171 1090.929311 1174.777085 1258.264062 1270.451934 1337.906338 1062.749634 930.730846 0.971900088 0.976395115 1.130461266 1.172121152 1.262209252 1.351909704 1.365004651 1.437479314 1.141844217 1 9.862220211 -5.882927917 0.847167172 0.982328412 1.415131152 0.870868153 0.057715272 0.071543084 0.097074804 0.005421806 0.017099357 1.31E-06 5.882927917 0.43280274 FHPEPYGLEDDQRS(ph)MGYDDLDYGMMSDYGTAR ddPTM_HeLa_CUDC101_4h_R1 2 FHPEPYGLEDDQRSMGYDDLDYGMMSDYGTAR 32 1 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-19;O60716-4;O60716-6;O60716-11;O60716-13;O60716-21;O60716-24;O60716-9;O60716-17;O60716-16;O60716-10;O60716-23;O60716-15;O60716-18;O60716-12;O60716-22;O60716-20;O60716-14 O60716-5 CTNND1 Catenin delta-1 1 0 FHPEPY(0.075)GLEDDQRS(0.437)MGY(0.377)DDLDY(0.103)GMMS(0.004)DY(0.002)GT(0.002)AR;FHPEPY(0.082)GLEDDQRS(0.483)MGY(0.431)DDLDY(0.003)GMMS(0.001)DYGTAR ; 51.557 0.0063612 17798000 1758.75 1495.12 1397.36 1660.16 2131.5 2045.83 1405.62 2178.9 1538.43 1795.81 TRUE FALSE FALSE 1552.591991 1541.182875 1472.905508 1727.868501 1974.263492 2006.809201 1459.835234 2426.937169 1475.015264 1785.128442 0.869736852 0.86334565 0.825097776 0.967923909 1.105950387 1.124181966 0.817776021 1.359530839 0.826279627 1 10.80181217 -5.882862702 4.687555268 0.92143227 1.082557046 0.359043606 0.134153841 0.224658576 8.275640758 0.018696477 0.034667377 1.31E-06 5.882862702 0.161124777 NYADHVR ddPTM_HeLa_CUDC101_4h_R1 5 NYADHVR 7 0 Q6P587;Q6P587-2;Q6P587-3 Q6P587 FAHD1 "Acylpyruvase FAHD1, mitochondrial" 0 0 ;;;; ;;;; 127.12 0.0015482 1126620 4394.45 2691.72 4083.65 4031.4 3169.89 2519.94 2954.8 2348.67 3284.3 3201.99 FALSE FALSE TRUE 3879.339233 2774.648703 4304.424471 4195.817917 2936.05353 2471.876343 3068.767626 2616.033099 3148.919764 3182.944421 1.218789498 0.871723893 1.352340444 1.318219033 0.922433176 0.776600536 0.964128561 0.821890914 0.98931032 1 11.63614625 -5.550834757 18.59444561 1.120596788 0.862585093 0.422671895 0.146792152 9.537559869 6343.480554 0.021822016 0.043650615 2.81E-06 5.550834757 -0.258011694 NSS(ph)PAPPQPAPGK ddPTM_HeLa_CUDC101_4h_R1 4 NSSPAPPQPAPGK 13 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 NS(0.231)S(0.769)PAPPQPAPGK;NS(0.031)S(0.969)PAPPQPAPGK;NS(0.001)S(0.999)PAPPQPAPGK;NS(0.002)S(0.998)PAPPQPAPGK ;;; 193.11 1.31E-12 509730000 50442.4 38587.7 41245.2 40366.8 35428.6 36760.8 36356.7 32347.5 41219.5 43409.8 TRUE FALSE FALSE 44529.61834 39776.5413 43475.04027 42013.13258 32815.10276 36059.64899 37758.9901 36029.80865 39520.41476 43151.59658 1.031934433 0.921786086 1.007495521 0.973617106 0.760460918 0.835650401 0.875031125 0.834958878 0.91585058 1 15.39712632 -5.882473023 5.895541275 1.005751914 0.831339951 0.676383764 0.047972875 0.064689979 3.109925635 0.005952788 0.010907109 1.31E-06 5.882473023 -0.174411963 FNEEHIPDSPFVVPVASPS(ph)GDAR ddPTM_HeLa_CUDC101_4h_R1 2 FNEEHIPDSPFVVPVASPSGDAR 23 0 P21333-2;P21333;Q60FE5;A0A087WWY3;H0Y5C6 P21333-2 FLNA Filamin-A 1 0 FNEEHIPDSPFVVPVAS(0.382)PS(0.617)GDAR;FNEEHIPDSPFVVPVAS(0.412)PS(0.588)GDAR ; 127.42 1.20E-07 582090000 4557.4 4088.5 3934.9 4102.2 4766.2 4391 3929 4325 4590.1 4489.8 TRUE FALSE FALSE 4023.188481 4214.461839 4147.632596 4269.505447 4414.606922 4307.248991 4080.542846 4817.340518 4400.894135 4463.09447 0.901434757 0.944291425 0.92931768 0.956624485 0.98913589 0.965081295 0.914285564 1.079372294 0.986063406 1 12.12382863 -5.882238481 5.520478495 0.949533108 0.9800684 0.107955838 0.045972646 0.464045734 20.74916074 0.007491067 0.013763964 1.31E-06 5.882238481 0.030535292 PS(ph)AAS(ph)S(ph)KT(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 PSAASSKTK 9 1 P51816-4;P51816-2;P51816-6;P51816-3;P51816-5;P51816 P51816-4 AFF2 AF4/FMR2 family member 2 4 0 PS(1)AAS(1)S(1)KT(1)K;PS(1)AAS(1)S(1)KT(1)K ; 81.191 0.001779 18264000 854.36 1297.64 1693.82 1672.58 7167.1 7990.2 4303.18 2540.21 5497.8 209.98 TRUE FALSE FALSE 754.2132159 1337.61875 1785.393033 1740.795042 6638.397312 7837.800248 4469.155094 2829.377239 5271.178357 208.7310296 3.613325806 6.408336857 8.553558309 8.339895822 31.80359587 37.54976087 21.41107195 13.55513478 25.25344874 1 7.705501275 -5.881842888 4.460884174 3.269979192 26.50315512 0.382548842 9.36020937 0.0837085 2.890030324 0.990976632 1.844216316 1.31E-06 5.881842888 23.23317593 ESTESSNTT(ph)IEDEDVK ddPTM_HeLa_CUDC101_4h_R1 1 ESTESSNTTIEDEDVK 16 0 H0Y9J2;D6R938;Q13557-8;Q13557-12;Q13557;E9PBG7;E9PF82;Q13557-10;Q13557-6;Q13557-11 H0Y9J2 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 1 0 ESTESSNT(0.342)T(0.658)IEDEDVK 243.04 4.55E-44 45915000 6191.1 4517.5 4574.6 4195.8 4296.6 3975.1 3534.7 2763.2 5052 6032.4 TRUE FALSE FALSE 5465.388643 4656.67882 4821.916713 4366.92286 3979.648378 3899.28159 3671.034563 3077.751519 4843.754422 5996.519017 0.911426884 0.776563671 0.804119307 0.728242977 0.663659761 0.650257521 0.612194267 0.513256359 0.807761037 1 12.54990954 -5.881595595 0.311416017 1.017241522 0.423947079 0.77207198 0.065519139 0.312424267 0.049240627 0.015989272 0.066555654 1.31E-06 5.881595595 -0.593294443 T(ph)LSPTPS(ph)AEGYQDVR ddPTM_HeLa_CUDC101_4h_R1 1 TLSPTPSAEGYQDVR 15 0 O14639-3;O14639-5;J3QSX6;O14639-4;H0Y7N6;F6XFR5;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639;A0A494C1P1;A0A494C1G0 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 2 0 T(0.997)LS(0.003)PT(0.001)PS(0.999)AEGYQDVR 210.91 5.23E-23 46075000 4793 4110 3591.3 3291.2 3721.6 3238.8 2695.8 2602.6 4609.1 4210.2 TRUE FALSE FALSE 4231.171806 4236.624228 3785.456541 3425.429362 3447.064982 3177.025286 2799.777909 2898.869464 4419.110947 4185.157543 1.010994631 1.012297431 0.90449559 0.818470829 0.823640436 0.75911725 0.668977901 0.692654801 1.05590074 1 12.03106622 -5.880432855 0.763214727 1.010057063 0.674720284 0.947097199 0.030988662 0.103862024 0.111640321 0.005492365 0.018678707 1.32E-06 5.880432855 -0.335336779 LES(ph)LNIQR ddPTM_HeLa_CUDC101_4h_R1 1 LESLNIQR 8 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 LES(1)LNIQR 81.525 0.040515 5994400 2812.7 2124.4 2659.6 3031.3 2984.4 3701.2 3399.6 2824 2420 2665.6 TRUE FALSE FALSE 2482.99957 2189.850246 2803.386021 3154.929516 2764.246758 3630.605777 3530.723711 3145.472745 2320.246576 2649.744893 0.937071179 0.826438142 1.057983366 1.190654061 1.043212411 1.370171818 1.332476844 1.187085124 0.875649042 1 11.37163775 -5.878991504 1.155979701 0.960412775 1.288959065 0.702351273 0.095487931 0.199465111 0.526674162 0.015136408 0.039137518 1.32E-06 5.878991504 0.328546291 SDS(ph)DSSTLPR ddPTM_HeLa_CUDC101_4h_R1 2 SDSDSSTLPR 10 0 Q9ULE0 Q9ULE0 WWC3 Protein WWC3 1 0 S(0.094)DS(0.848)DS(0.057)S(0.001)TLPR;S(0.003)DS(0.99)DS(0.006)S(0.001)TLPR ; 128.88 0.0026615 110385000 4199.8 4142.7 3680.4 3911.8 4617.6 4104.5 3875 4052.1 4330.5 4419.7 TRUE FALSE FALSE 3707.50581 4270.331677 3879.373557 4071.340112 4276.968848 4026.213501 4024.460048 4513.374685 4151.994957 4393.411428 0.843878583 0.97198538 0.882998012 0.926692202 0.97349609 0.916420774 0.916021664 1.027305264 0.945050339 1 12.10112589 -5.878696061 9.72214614 0.924715484 0.952259662 0.070483352 0.050270852 0.914106628 73.83922101 0.009631954 0.01748032 1.32E-06 5.878696061 0.027544178 AGDRNS(ph)EDDGVVMTFSSVK ddPTM_HeLa_CUDC101_4h_R1 4 AGDRNSEDDGVVMTFSSVK 19 1 Q9NY61 Q9NY61 AATF Protein AATF 1 0 AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK;AGDRNS(1)EDDGVVMTFSSVK ;;; 146.13 3.72E-07 58006000 14253.8 10078 8600.09 9069.65 8605.41 8948.86 7597.09 8322.64 10992.09 6831.9 TRUE FALSE FALSE 12582.99117 10388.49123 9065.036879 9439.549529 7970.606049 8778.175405 7890.112306 9270.055696 10538.9914 6791.263555 1.852820329 1.529684594 1.334808583 1.389954823 1.173655828 1.292568803 1.161803285 1.364997194 1.551845443 1 12.72946431 -5.87797429 5.812503926 1.417461292 1.245814612 0.169425961 0.207403114 0.526803209 24.93820555 0.047808393 0.087670982 1.32E-06 5.87797429 -0.17164668 SSSASS(ph)PEMK ddPTM_HeLa_CUDC101_4h_R1 3 SSSASSPEMK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SSS(0.001)AS(0.295)S(0.704)PEMK;SSS(0.001)AS(0.314)S(0.685)PEMK;SSSAS(0.055)S(0.945)PEMK ;; 103.31 0.0033737 28663000 15334.9 6978.8 15372.8 16723.8 8840.6 8153.3 7871.5 3965.31 16686.7 19155.4 TRUE FALSE FALSE 13537.36627 7193.808556 16203.90007 17405.86885 8188.446551 7997.789387 8175.106392 4416.704862 15998.86716 19041.46283 0.710941506 0.377797054 0.850979792 0.914103554 0.430032431 0.420019694 0.429331846 0.231951972 0.840212084 1 14.2168567 -5.877851213 0.170834989 1.12132 4.04E-15 0.544523016 0.173735061 4.896802057 0.307724157 0.525941672 1.467108522 1.32E-06 5.877851213 -1.12132 QLS(ph)SDAEAQK ddPTM_HeLa_CUDC101_4h_R1 1 QLSSDAEAQK 10 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 QLS(0.828)S(0.172)DAEAQK 103.44 0.0017686 0 1960.8 1359.5 1523.8 1578.4 2143.8 1758.1 1844 1590.2 1655.3 1565.1 TRUE FALSE FALSE 1730.957996 1401.384584 1606.181237 1642.773974 1985.656145 1724.567172 1915.123698 1771.22194 1587.067833 1555.790716 1.112590517 0.900753919 1.03238901 1.055909357 1.276300292 1.108482751 1.230964858 1.138470568 1.020103679 1 10.60343229 -5.87776629 7.766263251 1.039508143 1.185498732 0.593829028 0.067146326 0.15075236 9.680258605 0.010516404 0.019132133 1.33E-06 5.87776629 0.145990589 RHGAPAAPS(ph)PPPR ddPTM_HeLa_CUDC101_4h_R1 2 RHGAPAAPSPPPR 13 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 RHGAPAAPS(1)PPPR;RHGAPAAPS(1)PPPR ; 107.51 0.0028357 52714000 3147.1 1913.41 2026.79 2320.76 3262 2926.78 2652.7 2074.31 2131.95 2172.48 TRUE FALSE FALSE 2778.201709 1972.359894 2136.364398 2415.410624 3021.368759 2870.956548 2755.015528 2310.441066 2044.070119 2159.557992 1.286467749 0.913316475 0.989260027 1.118474536 1.399068129 1.329418593 1.275731209 1.069867572 0.946522449 1 11.07652034 -5.877149799 9.432871021 1.106251963 1.273152306 0.352530947 0.134374505 0.337440532 26.48454517 0.0223908 0.040644198 1.33E-06 5.877149799 0.166900343 AIS(ph)SANLLVR ddPTM_HeLa_CUDC101_4h_R1 3 AISSANLLVR 10 0 B7WPE2;Q32P44;G3V1D0;H0Y3M3;Q32P44-2 B7WPE2 EML3 Echinoderm microtubule-associated protein-like 3 1 0 AIS(0.723)S(0.277)ANLLVR;AIS(0.5)S(0.5)ANLLVR;AIS(0.5)S(0.5)ANLLVR ;; 154.67 0.00017525 164751000 8245.1 6914.1 5330.58 7234.2 8224.8 10483.6 8590.1 4910 4837.65 5931.2 TRUE FALSE FALSE 7278.621877 7127.115226 5618.767279 7529.241945 7618.07289 10283.6428 8921.423034 5468.934553 4638.240019 5895.920959 1.234518225 1.208821366 0.952992301 1.277025591 1.2920921 1.744196177 1.513151736 0.927579354 0.786686262 1 12.52550147 -5.876484549 2.693297906 1.112111397 1.412182106 0.286754582 0.232141315 0.263892215 3.879158641 0.03188412 0.062805683 1.33E-06 5.876484549 0.30007071 NYQQNYQNSESGEKNEGSESAPEGQAQQR ddPTM_HeLa_CUDC101_4h_R1 1 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 H0Y449;P67809;C9J5V9 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 0 0 138.57 4.26E-16 5098800 398.83 489.4 264.66 273.03 312.86 237.51 402.58 439.08 347.14 457.9 FALSE FALSE TRUE 352.079752 504.4778339 278.9683202 284.1653435 289.7809411 232.9798925 418.1076455 489.0630924 332.8307423 455.1763904 0.773501788 1.108312831 0.612879591 0.624297194 0.636634384 0.511845292 0.918561802 1.074447407 0.731212667 1 8.830281918 -9.106588676 0.462676319 1.044167079 0.753942731 0 0.205862081 2.393957787 0.751469495 0.322872956 0.059163982 7.82E-10 9.106588676 -0.290224348 S(ph)QSIEQESQEK ddPTM_HeLa_CUDC101_4h_R1 2 SQSIEQESQEK 11 0 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 S(0.998)QS(0.002)IEQESQEK;S(0.987)QS(0.013)IEQESQEK ; 222.56 2.36E-32 39657000 5480.8 3845.1 4848.5 3817.3 3956.4 3452.7 3340.6 2797.5 4198.7 4513.7 TRUE FALSE FALSE 4838.348932 3963.562973 5110.624576 3972.985994 3664.544254 3386.8455 3469.448061 3115.956092 4025.627809 4486.852312 1.078339245 0.88337273 1.139022241 0.88547287 0.816729413 0.754837749 0.773247662 0.694463708 0.89720533 1 12.13148798 -5.876133785 2.074860409 1.031206718 0.7490871 0.65859811 0.079505403 0.101955272 0.890717475 0.009948424 0.020568988 1.33E-06 5.876133785 -0.282119618 RLS(ph)PAER ddPTM_HeLa_CUDC101_4h_R1 1 RLSPAER 7 1 P41212 P41212 ETV6 Transcription factor ETV6 1 0 RLS(1)PAER 77.533 0.026376 9388800 1196.9 651.21 1310.8 1379.3 1010.8 690.67 1015.2 480 1071.3 1425.6 TRUE FALSE FALSE 1056.601196 671.2730082 1381.665813 1435.553816 936.2352978 677.4966205 1054.356604 534.6412598 1027.140561 1417.120468 0.745597301 0.473688034 0.974981199 1.013007608 0.660660345 0.478079765 0.744013391 0.377272978 0.724808218 1 10.46874669 -5.87531187 0.079552706 1.382829966 4.57E-20 0.179164424 0.196561367 36.45047697 0.93949746 6.056712186 10.30274395 1.33E-06 5.87531187 -1.382829966 YVASYLLAALGGNS(ph)SPSAK ddPTM_HeLa_CUDC101_4h_R1 1 YVASYLLAALGGNSSPSAK 19 0 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 1 0 YVASYLLAALGGNS(0.976)S(0.024)PSAK 294.93 1.66E-123 293250000 1193.1 1274 1295.7 1155.3 1171.5 1013.8 1128.9 1035.2 1315.3 1401 TRUE FALSE FALSE 1053.246627 1313.25043 1365.749461 1202.418128 1085.080779 994.4634541 1172.442051 1153.042984 1261.082777 1392.66679 0.756280421 0.942975333 0.980672097 0.863392548 0.779138834 0.71407135 0.84186832 0.827938881 0.905516515 1 10.4436344 -5.874787857 4.68539595 0.894803067 0.789293437 0.395076502 0.070885374 0.273968006 10.09414205 0.01494649 0.027748752 1.33E-06 5.874787857 -0.10550963 DEEQSEADAGS(ph)GPPT(ph)PGPTTLGPK ddPTM_HeLa_CUDC101_4h_R1 2 DEEQSEADAGSGPPTPGPTTLGPK 24 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2;A0A087X0E3 A0A0A0MS59 SRCAP Helicase SRCAP 2 0 DEEQS(0.001)EADAGS(0.999)GPPT(1)PGPTTLGPK;DEEQS(0.002)EADAGS(0.998)GPPT(0.912)PGPT(0.069)T(0.02)LGPK ; 112.85 6.62E-07 9698300 3067 3146 2936.1 2997.5 3757.2 4173 3152.2 2734.9 2707.8 3186.8 TRUE FALSE FALSE 2707.490909 3242.924531 3094.834447 3119.751006 3480.038841 4093.406978 3273.78141 3046.229961 2596.183338 3167.844772 0.85467916 1.02370058 0.976952682 0.984818143 1.098550937 1.292174103 1.033441234 0.961609605 0.819542473 1 11.62928593 -5.874516719 3.065998367 0.941975617 1.106569018 0.378627614 0.097334757 0.209850618 3.954126943 0.014927591 0.028907536 1.34E-06 5.874516719 0.164593401 NYTDEAIETDDLTIK ddPTM_HeLa_CUDC101_4h_R1 2 NYTDEAIETDDLTIK 15 0 O14818;H0Y586;O14818-2 O14818 PSMA7 Proteasome subunit alpha type-7 0 0 ; ; 207.64 1.13E-22 48285000 3620.7 3941.4 3416.1 3537.5 3701.2 4055.3 3550.8 3418.5 3724.5 3577.2 FALSE FALSE TRUE 3196.287035 4062.829862 3600.784699 3681.77454 3428.16985 3977.951909 3687.755545 3807.648222 3570.974534 3555.922655 0.898862924 1.142552934 1.012616147 1.035392189 0.964073233 1.118683474 1.037074173 1.070790507 1.004232904 1 11.79600823 -7.275930823 24.99984563 0.952240826 1.050437972 0.327987621 0.055393583 603.8287118 1041689.574 0.009865095 0.011310949 5.30E-08 7.275930823 0.098197146 S(ph)NIDISSGLEDEEPKRPLPR ddPTM_HeLa_CUDC101_4h_R1 1 SNIDISSGLEDEEPKRPLPR 20 2 Q9BZ71-3;Q9BZ71 Q9BZ71-3 PITPNM3 Membrane-associated phosphatidylinositol transfer protein 3 1 0 S(0.999)NIDIS(0.001)SGLEDEEPKRPLPR 84.125 0.0011884 19397000 2113.4 2093.6 1931.8 1835.5 1810.3 1708.2 1914.5 1490.5 1686.7 1948.3 TRUE FALSE FALSE 1865.670456 2158.101334 2036.238951 1910.359624 1676.757776 1675.618931 1988.342906 1660.172495 1617.173512 1936.711425 0.963318764 1.114312286 1.051389962 0.986393532 0.865775744 0.865187714 1.026659357 0.857212114 0.835010054 1 10.91939329 -5.874435707 6.883792341 0.999682482 0.910070159 0.219635784 0.080407312 0.206204716 11.74013031 0.009423958 0.017188399 1.34E-06 5.874435707 -0.089612322 LIES(ph)PFER ddPTM_HeLa_CUDC101_4h_R1 4 LIESPFER 8 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 LIES(1)PFER;LIES(1)PFER;LIES(1)PFER;LIES(1)PFER ;;; 147.73 0.0033084 115490000 12113.4 10591.8 10178.7 9032.4 9669.4 8866.8 8196.1 6931.3 10444.8 11105.3 TRUE FALSE FALSE 10693.48561 10918.1208 10728.99131 9400.780313 8956.107626 8697.680563 8512.226323 7720.331175 10014.26092 11039.24518 0.968679057 0.989027839 0.971895373 0.851578179 0.811297102 0.787887253 0.771087713 0.699353176 0.907150875 1 13.43035391 -5.874070971 0.984607193 0.988446309 0.738196781 0.884624875 0.034248356 0.081161561 0.152541427 0.004077934 0.011692949 1.34E-06 5.874070971 -0.250249527 NYYEQWGK ddPTM_HeLa_CUDC101_4h_R1 2 NYYEQWGK 8 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ; ; 146.81 0.019411 367460000 7111.7 6743.5 6739.7 5995.1 6657.8 5719.8 5840.9 5847 6290.9 6188.1 FALSE FALSE TRUE 6278.077307 6951.259242 7104.068568 6239.606091 6166.667358 5610.704345 6066.18547 6512.598846 6031.586439 6151.292906 1.020611017 1.130048487 1.15489031 1.014356849 1.002499385 0.912117896 0.986164301 1.058736585 0.980539625 1 12.58667396 -3.706949781 6.256264454 1.019808537 3.712880445 0.024310286 0.067375788 12914.31791 4299.100451 0.009774174 486070.9472 0.000196359 3.706949781 2.693071908 EGNTTEDDFPS(ph)SPGNGNK ddPTM_HeLa_CUDC101_4h_R1 2 EGNTTEDDFPSSPGNGNK 18 0 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 1 0 EGNTTEDDFPS(0.892)S(0.108)PGNGNK;EGNTTEDDFPS(0.725)S(0.275)PGNGNK ; 210.2 4.91E-24 224745000 12454.9 10751.5 10685.3 10621.2 11361.3 10677.7 10264.4 10168.2 11832.6 11258 TRUE FALSE FALSE 10994.9555 11082.74097 11262.97964 11054.37844 10523.19953 10474.04066 10660.30135 11325.70679 11344.85522 11191.03692 0.982478709 0.990322975 1.006428602 0.987788578 0.940323905 0.935931205 0.952574943 1.012033726 1.013744777 1 13.4500561 -5.873388858 7.012504491 0.992570834 0.958054543 0.405216945 0.021342538 0.171932319 10.00400803 0.003004095 0.005476842 1.34E-06 5.873388858 -0.034516291 VDDDS(ph)LGEFPVTNSR ddPTM_HeLa_CUDC101_4h_R1 3 VDDDSLGEFPVTNSR 15 0 J3KMZ8;Q92785;Q92785-2 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 VDDDS(1)LGEFPVTNSR;VDDDS(0.914)LGEFPVT(0.085)NS(0.001)R;VDDDS(1)LGEFPVTNSR ;; 170.78 7.07E-07 172194000 2983.54 2981.4 2936.93 2998.01 4218.05 4013.75 4109.41 3136.64 2769.72 3060.43 TRUE FALSE FALSE 2633.813964 3073.2534 3095.70932 3120.281806 3906.892855 3937.194406 4267.91132 3493.702419 2655.550969 3042.226426 0.865752115 1.010198772 1.017580182 1.025657321 1.284221589 1.29418191 1.402890752 1.148403153 0.872897213 1 11.57091182 -5.873177832 1.972585491 0.945500348 1.301178032 0.802988375 0.077128239 0.102712214 0.810478451 0.012247018 0.02566785 1.34E-06 5.873177832 0.355677684 EPLIPAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 EPLIPASPK 9 0 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 0 EPLIPAS(1)PK;EPLIPAS(1)PK ; 111.63 0.0094155 66223000 14001.4 11663.8 11738.1 11933.3 14025.9 13278.1 13270.5 11226.6 10925.3 11712 TRUE FALSE FALSE 12360.17712 12023.14785 12372.69719 12419.99155 12991.2373 13024.84237 13782.34763 12504.59076 10474.95451 11642.3365 1.061657779 1.032709186 1.062733171 1.066795445 1.115861691 1.118748145 1.183812856 1.07406196 0.899729578 1 13.507093 -5.872870596 0.221634829 0.991269049 1.192110998 0.594543157 0.045988113 2.345378293 0.211064679 0.041655831 0.142090773 1.34E-06 5.872870596 0.200841949 VVPGQFDDADSS(ph)DSENR ddPTM_HeLa_CUDC101_4h_R1 2 VVPGQFDDADSSDSENR 17 0 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 0 VVPGQFDDADS(0.417)S(0.583)DSENR;VVPGQFDDADS(0.448)S(0.55)DS(0.002)ENR ; 178.52 1.10E-07 66709300 5760.4 4651.1 5049 4837 4749 4416.4 4538.5 4132.9 4851.3 5398.9 TRUE FALSE FALSE 5085.174644 4794.394878 5321.964212 5034.273767 4398.675731 4332.164528 4713.551465 4603.37263 4651.327361 5366.787103 0.947526806 0.893345457 0.991648096 0.938042384 0.819610625 0.807217511 0.878281805 0.857752048 0.866687512 1 12.38984294 -5.871073449 4.615059475 0.968107676 0.841307578 0.474992367 0.046161119 0.085933782 3.113911534 0.00561733 0.010446646 1.35E-06 5.871073449 -0.126800098 TGDLGIPPNPEDRSPS(ph)PEPIYNSEGK ddPTM_HeLa_CUDC101_4h_R1 1 TGDLGIPPNPEDRSPSPEPIYNSEGK 26 1 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637;Q15637-7;Q15637-5 Q15637-6 SF1 Splicing factor 1 1 0 TGDLGIPPNPEDRS(0.41)PS(0.463)PEPIY(0.048)NS(0.079)EGK 50.757 0.016472 9496100 1017.4 1127.2 1063.9 1146.7 1654.8 1449.9 1506.8 1306.6 1551.1 1273 TRUE FALSE FALSE 898.1419143 1161.927696 1121.417652 1193.467382 1532.728701 1422.245573 1564.917781 1455.338063 1487.163001 1265.428139 0.709753392 0.91820915 0.886196234 0.943133273 1.2112333 1.123924409 1.236670603 1.150075628 1.175225171 1 10.30540987 -5.87104343 3.543201822 0.867258737 1.181602485 0.432359641 0.122363433 0.113795976 2.776449072 0.01663687 0.031711194 1.35E-06 5.87104343 0.314343748 VKPPGGHS(ph)PQVNHLK ddPTM_HeLa_CUDC101_4h_R1 1 VKPPGGHSPQVNHLK 15 1 Q92610 Q92610 ZNF592 Zinc finger protein 592 1 0 VKPPGGHS(1)PQVNHLK 61.684 0.02868 26924000 2826.9 2486.8 3039.3 2602.2 2628.5 2539.8 2045.1 2618.3 2994.2 3111.5 TRUE FALSE FALSE 2495.535067 2563.41536 3203.613751 2708.328964 2434.600792 2491.357547 2123.980192 2916.356688 2870.777809 3092.99266 0.806835108 0.828781586 1.035765068 0.875633815 0.787134358 0.805484468 0.686707156 0.942891565 0.92815539 1 11.59478769 -5.870911048 4.776275262 0.909613896 0.797394036 0.271500666 0.086798729 0.253207274 9.591966416 0.014777246 0.027413615 1.35E-06 5.870911048 -0.11221986 IY(ph)VT(ph)KT(ph)QK ddPTM_HeLa_CUDC101_4h_R1 1 IYVTKTQK 8 1 Q9UBM8;Q9UBM8-2 Q9UBM8 MGAT4C "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" 3 0 IY(1)VT(1)KT(1)QK 50.703 0.039619 14305000 985.7 1072.6 839.39 1137.9 1906.8 1544.7 1692.3 1396.7 1626.1 1245.3 TRUE FALSE FALSE 870.1577402 1105.645535 884.7699624 1184.30848 1766.139163 1515.237421 1757.572578 1555.694682 1559.07147 1237.8929 0.702934592 0.893167361 0.7147387 0.956713202 1.426730182 1.224045651 1.419809886 1.256728011 1.259455862 1 10.27367079 -5.868075222 4.879668439 0.848971144 1.329160861 0.587125072 0.164031703 0.075009059 2.930861152 0.018840417 0.034914039 1.35E-06 5.868075222 0.480189716 LESEST(ph)SPSLEMK ddPTM_HeLa_CUDC101_4h_R1 2 LESESTSPSLEMK 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 LESES(0.001)T(0.94)S(0.059)PSLEMK;LES(0.001)ES(0.022)T(0.448)S(0.448)PS(0.081)LEMK ; 227.56 2.13E-32 38068000 7355.3 6828.7 6424.3 6236.3 6699.3 6001.7 5377.8 5995.9 6858.7 7095.6 TRUE FALSE FALSE 6493.122884 7039.084153 6771.61709 6490.64327 6205.105986 5887.227572 5585.223547 6678.44902 6575.981483 7053.395056 0.920567022 0.997971062 0.960050733 0.920215473 0.879733226 0.834665792 0.791848961 0.946841764 0.932314358 1 12.78410213 -5.868069811 2.002045036 0.964581353 0.852064778 0.540695585 0.043000323 0.182575994 1.485079708 0.006945039 0.014540403 1.35E-06 5.868069811 -0.112516575 PKPSS(ph)SPVIFAGGQDR ddPTM_HeLa_CUDC101_4h_R1 2 PKPSSSPVIFAGGQDR 16 1 Q15366-2;Q15366;Q15366-3;Q15366-6;H3BSS4 Q15366-2 PCBP2 Poly(rC)-binding protein 2 1 0 PKPS(0.014)S(0.844)S(0.142)PVIFAGGQDR;PKPS(0.187)S(0.774)S(0.039)PVIFAGGQDR ; 111.11 0.0078721 156490000 8081.3 6051.2 5605.1 5966.9 4692.6 3461.6 3937.1 2782.4 4768.6 7656.9 TRUE FALSE FALSE 7134.022264 6237.6303 5908.128661 6210.255973 4346.436247 3395.575747 4088.955266 3099.137169 4572.03629 7611.356418 0.937286585 0.819516254 0.776225463 0.815919743 0.571046211 0.446119661 0.537217684 0.407172782 0.600686138 1 12.89393786 -5.866790163 0.535942094 0.988285837 0.368761341 0.534554017 0.13338394 0.190240264 0.090976158 0.013056929 0.055453091 1.36E-06 5.866790163 -0.619524496 GPEDSWLLLSAPGPT(ph)PASPRPASPCGK ddPTM_HeLa_CUDC101_4h_R1 1 GPEDSWLLLSAPGPTPASPRPASPCGK 27 1 Q14934-18;Q14934-17;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-9;Q14934-10;Q14934-11;Q14934-12;Q14934-13;Q14934-14;Q14934-15;Q14934-16;Q14934-2 Q14934-18 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 GPEDSWLLLSAPGPT(0.861)PAS(0.079)PRPAS(0.059)PCGK 117.8 4.63E-09 41128000 1324.7 1159.7 861.02 963.09 885.59 761.45 662.38 704.77 893.15 1020.2 TRUE FALSE FALSE 1169.420674 1195.428982 907.5693456 1002.368973 820.26179 746.9266099 687.9282185 784.998168 856.333979 1014.131805 1.153124937 1.178770823 0.894922476 0.988401082 0.80883154 0.736518277 0.678342021 0.774059313 0.844401068 1 9.986029454 -5.865676716 1.20969273 1.077528065 0.715468126 0.594272621 0.103184639 0.159215353 0.462066499 0.013747355 0.035002366 1.36E-06 5.865676716 -0.362059939 HLDRS(ph)PESDRPR ddPTM_HeLa_CUDC101_4h_R1 1 HLDRSPESDRPR 12 2 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 HLDRS(0.864)PES(0.136)DRPR 62.694 0.03041 325670000 738.52 711.49 785.86 647.9 801.39 777.6 819.48 652.01 794.35 743.04 TRUE FALSE FALSE 651.9518051 733.4101636 828.3459687 674.3241625 742.2730563 762.7685756 851.0876181 726.2321829 761.6065568 738.620365 0.882661562 0.992946036 1.121477295 0.912950948 1.004945289 1.03269367 1.152266656 0.983227944 1.031120441 1 9.52868923 -5.863712764 0.692412681 0.949977664 1.068252277 0.015563048 0.077093944 0.948737554 0.814194296 0.01584778 0.058567859 1.37E-06 5.863712764 0.118274613 AQSLVIS(ph)PPAPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 AQSLVISPPAPSPR 14 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 2 0 AQS(0.015)LVIS(0.985)PPAPS(1)PR 120.99 0.013502 32280000 5021.6 4087.4 3975.3 3891.4 4442 4250.6 3144.7 1307.8 4512.2 4681.6 TRUE FALSE FALSE 4432.97566 4213.327949 4190.216743 4050.108112 4114.32251 4169.526887 3265.992132 1456.674666 4326.205206 4653.753635 0.952559161 0.905361194 0.900395051 0.870288466 0.884086875 0.895949209 0.701797385 0.313010696 0.929616294 1 12.18417912 -4.215246003 1.264847873 0.954458338 6.84E-21 0.948432319 0.042895006 0.278650772 0.346747088 0.007920108 0.353816744 6.09E-05 4.215246003 -0.954458338 down PAPEPEAEGSAVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 PAPEPEAEGSAVKR 14 1 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 0 1 ; PAPEPEAEGSAVK(1)R;PAPEPEAEGSAVK(1)R 185.99 1.67E-11 7367900 951.58 895.35 917.83 1042.94 489.78 601.09 660.62 457.55 691.08 866.09 FALSE TRUE FALSE 840.0372349 922.9346722 967.4506661 1085.475601 453.6499052 589.6252097 686.1003347 509.6356425 662.5933899 860.9384582 0.975722744 1.072010041 1.123716401 1.260805103 0.526924893 0.684863365 0.796921462 0.591953627 0.7696176 1 9.749766304 -5.75142451 24.99999383 1.023506891 0.663126761 0.663938207 0.133413258 85.49419306 213416.5345 0.016314973 0.032325949 1.77E-06 5.75142451 -0.360380129 S(ph)TGGAPTFNVTVTK ddPTM_HeLa_CUDC101_4h_R1 1 STGGAPTFNVTVTK 14 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 1 0 S(0.865)T(0.134)GGAPTFNVTVTK 101.2 0.0070706 13746000 1305.4 1234.1 1017.6 1074.4 928.71 1076.7 960.23 776.88 1383.6 1115.2 TRUE FALSE FALSE 1152.382991 1272.121158 1072.614534 1118.218676 860.2009136 1056.163741 997.2663928 865.3168789 1326.567422 1108.566741 1.039525135 1.147536825 0.967568749 1.008706679 0.775957714 0.952729053 0.899599777 0.78057265 1.196650931 1 10.11447991 -5.862285797 7.312356979 1.025597175 0.863191022 0.571239698 0.084983446 0.117303629 7.49505372 0.009450642 0.017218166 1.37E-06 5.862285797 -0.162406153 S(ph)IHRDHIESPK ddPTM_HeLa_CUDC101_4h_R1 1 SIHRDHIESPK 11 1 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(1)IHRDHIESPK 59.607 0.038616 19149000 3619.6 3328.2 3671.3 3735.3 5027.5 4118.8 4106.5 4502.9 3655.1 4406.9 TRUE FALSE FALSE 3195.315975 3430.737897 3869.781583 3887.641679 4656.631341 4040.240752 4264.889081 5015.491935 3504.435231 4380.687563 0.729409694 0.783150555 0.883373107 0.887450115 1.062990974 0.922284617 0.97356614 1.144909757 0.79997379 1 12.09694161 -5.862146118 5.566361695 0.862690687 1.014345149 0.493558663 0.087780573 0.214282452 9.986900316 0.017319343 0.031864001 1.37E-06 5.862146118 0.151654462 SWEDS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 SWEDSPER 8 0 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 SWEDS(1)PER;SWEDS(1)PER ; 112.3 0.010545 164953000 5008.8 4356.4 4402 4250.7 4534 3792 4016.7 4503.2 4654.8 4552.3 TRUE FALSE FALSE 4421.676057 4490.61552 4639.985435 4424.061919 4199.535853 3719.673918 4171.625465 5015.826085 4462.927174 4525.222717 0.977117886 0.992352377 1.025360678 0.977645123 0.928028545 0.821986928 0.921860807 1.108415298 0.986233707 1 12.14377308 -5.861765527 4.889516694 0.991997997 0.934819501 0.105907283 0.066748178 0.322942206 12.81543038 0.009692408 0.017976125 1.37E-06 5.861765527 -0.057178496 AGGPTTPLS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 AGGPTTPLSPTR 12 0 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 1 0 AGGPTT(0.002)PLS(0.968)PT(0.029)R 94.538 0.016162 301860000 2524.6 2274.3 2204.4 1983.5 1869.2 1701.4 1727.5 1286 2616.5 2336.2 TRUE FALSE FALSE 2228.670215 2344.368487 2323.576532 2064.395703 1731.31284 1668.94863 1794.130254 1432.393042 2508.646763 2322.304179 0.959680577 1.009501042 1.000547884 0.888942854 0.745515103 0.71866065 0.77256471 0.616798202 1.080240386 1 11.18134124 -5.860145724 2.201568958 0.984538093 0.709643138 0.889689861 0.048943332 0.058026799 0.571881401 0.005706639 0.011738135 1.38E-06 5.860145724 -0.274894955 DQDMSS(ph)PTTMK ddPTM_HeLa_CUDC101_4h_R1 1 DQDMSSPTTMK 11 0 Q5VW31;O00712;O00712-4;A0A1B0GW37;U3KQE8;A0A0A0MRX8;A0A1B0GU97;A0A2R8Y7V8;Q5VW30;Q5VW27;A0A1B0GWI9;A0A1B0GWJ4;A0A1B0GWB8;A0A1B0GVN4;Q5VW26;O00712-5;O00712-6 Q5VW31 NFIB Nuclear factor 1 B-type;Nuclear factor 1 1 0 DQDMS(0.229)S(0.761)PT(0.009)TMK 110.15 0.0012607 0 6494.3 5247.4 5038.4 4864.7 4590.9 4028.5 4053.6 3203.4 5610.4 5642.2 TRUE FALSE FALSE 5733.047999 5409.066174 5310.791144 5063.103493 4252.238453 3951.663074 4209.94871 3568.062107 5379.136937 5608.639943 1.022181501 0.964416726 0.946894648 0.902732845 0.758158573 0.704567081 0.750618466 0.636172431 0.959080453 1 12.45343525 -5.857977412 1.014929581 1.009654097 0.681070786 0.936405537 0.033110752 0.06981114 0.139803062 0.004698561 0.013387188 1.39E-06 5.857977412 -0.328583311 RPS(ph)PHDEEEFEVEEAAEAQAEPK ddPTM_HeLa_CUDC101_4h_R1 2 RPSPHDEEEFEVEEAAEAQAEPK 23 1 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 RPS(1)PHDEEEFEVEEAAEAQAEPK;RPS(1)PHDEEEFEVEEAAEAQAEPK ; 78.674 0.00043372 32748000 8584.2 7562.8 7789.8 7358.4 7056.7 6894 6904.4 5988.8 7889.8 8092.8 TRUE FALSE FALSE 7577.973089 7795.800904 8210.940151 7658.507358 6536.1413 6762.508436 7170.705021 6670.540784 7564.579105 8044.663666 0.941987559 0.969064864 1.020669166 0.951998452 0.812481612 0.840620406 0.891361693 0.829188275 0.940322606 1 12.97381639 -5.857035303 5.583089834 0.975220165 0.847038259 0.817654194 0.029519916 0.068173351 3.256145798 0.004674242 0.008602812 1.39E-06 5.857035303 -0.128181906 SPGS(ph)PPGPELPIETALDDR ddPTM_HeLa_CUDC101_4h_R1 1 SPGSPPGPELPIETALDDR 19 0 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-5;Q8TEW0-9;Q8TEW0-8;Q5VWU8;Q8TEW0-10;B1AP52;F5GZI3 Q5VWV2;F5GZI3 PARD3 Partitioning defective 3 homolog 1 0 S(0.007)PGS(0.957)PPGPELPIET(0.035)ALDDR 78.225 0.0078644 3252400 1182.5 970.77 773.19 914.97 878.76 894.31 719.06 690.4 1142.2 957.75 TRUE FALSE FALSE 1043.889143 1000.678273 814.9909902 952.2864314 813.9356255 877.2525268 746.7943851 768.9923453 1095.118033 952.0532604 1.096460866 1.051073837 0.856035081 1.000244914 0.854926567 0.921432196 0.784403999 0.80771988 1.150269715 1 9.894898474 -5.855976053 0.720835082 1.045876177 0.802261071 0.668885627 0.068834548 0.356489838 0.334637099 0.012706305 0.046064666 1.39E-06 5.855976053 -0.243615106 ARS(ph)PDLGPQEQMNPK ddPTM_HeLa_CUDC101_4h_R1 2 ARSPDLGPQEQMNPK 15 1 H3BUW4;H3BMU4;A0A0C4DGM2;C9K0J8;Q8IWY8-4;Q8IWY8-3;Q8IWY8-2;Q8IWY8 H3BUW4 ZSCAN29 Zinc finger and SCAN domain-containing protein 29 1 0 ARS(1)PDLGPQEQMNPK;ARS(1)PDLGPQEQMNPK ; 105.63 0.017112 22406600 4062.9 3601.63 3378.81 3188 3403.9 2616.44 2765.77 3178.1 3177.42 3498.5 TRUE FALSE FALSE 3586.653021 3712.591951 3561.478689 3318.02042 3152.801079 2566.535766 2872.446675 3539.882058 3046.445403 3477.690766 1.031331784 1.067545162 1.024092977 0.95408725 0.906578903 0.737999994 0.825963798 1.017882927 0.875996633 1 11.76391394 -5.855473657 2.368308774 1.020075113 0.854990092 0.341724139 0.08129416 0.162937373 1.859235957 0.010043309 0.020405112 1.39E-06 5.855473657 -0.165085021 APSPS(ph)INR ddPTM_HeLa_CUDC101_4h_R1 1 APSPSINR 8 0 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 0 APS(0.49)PS(0.51)INR 123.11 0.0068735 113990000 2518.8 1885.6 2073.7 1844.5 1618.2 1545.2 1357.8 1257.9 1913.2 2083.9 TRUE FALSE FALSE 2223.550082 1943.693101 2185.810495 1919.726683 1498.82861 1515.727884 1410.170801 1401.094251 1834.337086 2071.50487 1.073398433 0.938300039 1.055179993 0.92673047 0.723545781 0.731703751 0.680747036 0.676365415 0.885509425 1 11.0164635 -5.852467353 2.372092001 1.028499381 0.694983492 0.838910581 0.058791258 0.050785482 0.581461011 0.006328211 0.012871213 1.40E-06 5.852467353 -0.333515889 LADAMAESPS(ph)RDVVGSGTELQR ddPTM_HeLa_CUDC101_4h_R1 1 LADAMAESPSRDVVGSGTELQR 22 1 K7ESE9;Q9H6U6-6;Q9H6U6-2;Q9H6U6 K7ESE9 BCAS3 Breast carcinoma-amplified sequence 3 1 0 LADAMAES(0.038)PS(0.851)RDVVGS(0.056)GT(0.056)ELQR 68.189 0.0022131 20645000 758.22 503.19 511.2 610.26 774.97 698.25 640.33 615.97 726.45 638.38 TRUE FALSE FALSE 669.342601 518.6926875 538.8370183 635.1490406 717.8020071 684.9320446 665.0277426 686.089535 696.5054235 634.5828874 1.054775687 0.817375788 0.849119995 1.000892166 1.131139874 1.079342129 1.047976168 1.081166146 1.097579902 1 9.309664807 -5.85189885 8.146204225 0.992571663 1.081679365 0.290842173 0.08356993 0.331139624 26.27666249 0.013352329 0.02428306 1.41E-06 5.85189885 0.089107702 AS(ph)PEPEGEAAGK ddPTM_HeLa_CUDC101_4h_R1 2 ASPEPEGEAAGK 12 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 AS(1)PEPEGEAAGK;AS(1)PEPEGEAAGK ; 178.22 2.30E-07 76182000 4740.9 4670.1 4588.9 4338 4585 4309.9 3790 4502.6 4126.5 4826 TRUE FALSE FALSE 4185.178889 4813.980246 4836.989815 4514.92239 4246.773685 4227.695838 3936.18157 5015.157784 3956.403923 4797.294737 0.872403952 1.003478108 1.008274471 0.941139254 0.885243438 0.881266645 0.820500258 1.04541373 0.824715624 1 12.22800536 -5.850650831 6.18801581 0.949703735 0.900094436 0.034773095 0.076486784 0.405828935 22.94417592 0.010721097 0.019646939 1.41E-06 5.850650831 -0.049609299 SAS(ph)PHDVDLCLVSPCEFEHR ddPTM_HeLa_CUDC101_4h_R1 1 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 S(0.223)AS(0.777)PHDVDLCLVSPCEFEHR 92.136 0.0010337 53036000 2462.8 1164.2 1407.2 1281.4 2418.8 1700.8 2002.8 1630.4 1797.3 361.17 TRUE FALSE FALSE 2174.114317 1200.067622 1483.277489 1333.661031 2240.369943 1668.360074 2080.048667 1815.998146 1723.214533 359.0217448 6.055661945 3.342604284 4.131441926 3.714708232 6.240206827 4.646961077 5.793656505 5.05818428 4.79974976 1 8.487927416 -5.849910758 6.939518868 3.514642383 5.399412714 0.250282398 1.280842806 0.291659695 19.25045766 0.280972799 0.512833285 1.41E-06 5.849910758 1.884770331 DSENLASPS(ph)EYPENGER ddPTM_HeLa_CUDC101_4h_R1 2 DSENLASPSEYPENGER 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 DSENLAS(0.081)PS(0.896)EY(0.023)PENGER;DSENLAS(0.032)PS(0.968)EYPENGER ; 144.74 0.00016907 267059000 4086.3 3831.3 3579 3932.5 5468.6 4904.4 4753.6 4405.1 3794.9 4180.9 TRUE FALSE FALSE 3607.310108 3949.337812 3772.491566 4092.884348 5065.192273 4810.856741 4936.947944 4906.558778 3638.472616 4156.031821 0.8679698 0.9502665 0.907714793 0.984805825 1.218756855 1.157560132 1.187899457 1.180587394 0.87546794 1 12.02099099 -5.848085865 4.636190716 0.935717547 1.184222069 0.908368801 0.039906864 0.058487345 2.244897478 0.0075935 0.014180144 1.42E-06 5.848085865 0.248504523 KLSSWDQAET(ph)PGHT(ph)PSLR ddPTM_HeLa_CUDC101_4h_R1 2 KLSSWDQAETPGHTPSLR 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 KLSS(0.001)WDQAET(0.999)PGHT(0.734)PS(0.266)LR;KLSSWDQAET(1)PGHT(0.789)PS(0.211)LR ; 96.881 0.0012583 54494000 7271.7 4971.3 5656.2 6239 8497.7 8551.6 7821.6 7245 5663.4 5332.8 TRUE FALSE FALSE 6419.322349 5124.459861 5961.991281 6493.453387 7870.841601 8388.492478 8123.281732 8069.741515 5429.952255 5301.080268 1.210946076 0.966682186 1.124674779 1.224930214 1.484761823 1.582411896 1.53238233 1.522282461 1.024310514 1 12.37207067 -5.846455628 2.247953999 1.091937111 1.547267253 0.91254118 0.06795761 0.080980987 0.832944723 0.013335853 0.027492763 1.42E-06 5.846455628 0.455330142 VDLYQQAS(ph)PPDALR ddPTM_HeLa_CUDC101_4h_R1 2 VDLYQQASPPDALR 14 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 VDLYQQAS(1)PPDALR;VDLYQQAS(1)PPDALR ; 121.45 0.0013755 48631000 5319.56 6877.7 6146 7720.9 13322.9 11716 11575.9 7375.9 11840.2 10618.5 TRUE FALSE FALSE 4696.009241 7089.593785 6478.271351 8035.791675 12340.09621 11492.53682 12022.38634 8215.542642 11352.14194 10555.34069 0.444894142 0.671659399 0.613743463 0.761301024 1.169085544 1.088788809 1.138986101 0.77833041 1.075487971 1 13.36568552 -5.845760786 6.398727566 0.715901151 1.052904642 0.313716175 0.198572885 0.189207017 11.63105718 0.033806089 0.061892358 1.43E-06 5.845760786 0.337003491 YYS(ph)PCEEHPAETNQNEGSESGTIR ddPTM_HeLa_CUDC101_4h_R1 1 YYSPCEEHPAETNQNEGSESGTIR 24 0 A0A2R8YFR7;Q12774;A0A5F9ZGZ6 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 Y(0.118)Y(0.033)S(0.745)PCEEHPAET(0.088)NQNEGS(0.01)ES(0.004)GT(0.002)IR 65.765 0.0017489 6910300 1382.1 1222.4 1440 1210.6 1166.9 1166.4 1115.6 1030.2 1553.8 1299.8 TRUE FALSE FALSE 1220.092333 1260.060695 1517.850756 1259.973501 1080.820112 1144.152863 1158.629066 1147.473804 1489.751706 1292.068732 0.944293677 0.975227296 1.174744592 0.975159811 0.836503574 0.885520124 0.896724019 0.888090374 1.152997259 1 10.3354671 -5.845211978 6.972422049 0.990457075 0.879077173 0.428100728 0.080735219 0.174373529 12.11579155 0.009919704 0.018107767 1.43E-06 5.845211978 -0.111379902 QLS(ph)EEQPSGNGVK ddPTM_HeLa_CUDC101_4h_R1 2 QLSEEQPSGNGVK 13 0 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 0 QLS(1)EEQPSGNGVK;QLS(1)EEQPSGNGVK ; 155.06 1.68E-07 0 12767.1 10479.8 10401.8 10264.7 10034.9 9988.1 9143.9 8464.3 10792.4 10710.9 TRUE FALSE FALSE 11270.55989 10802.67022 10964.15277 10683.33883 9294.645419 9797.593634 9496.583286 9427.841698 10347.5327 10647.19109 1.058547724 1.01460283 1.029769512 1.00339505 0.872966902 0.920204545 0.891933206 0.885476894 0.971855639 1 13.37818525 -5.843946159 4.857023498 1.026807319 0.894639576 0.843681164 0.025096652 0.0512321 2.144452824 0.0035971 0.006697143 1.43E-06 5.843946159 -0.132167743 SMS(ph)FQGIR ddPTM_HeLa_CUDC101_4h_R1 2 SMSFQGIR 8 0 P15924-2;P15924-3;P15924 P15924-2 DSP Desmoplakin 1 0 S(0.002)MS(0.998)FQGIR;S(0.017)MS(0.983)FQGIR ; 97.597 0.021043 198198000 4553 3890.9 3402 3714.1 6134.7 5049.1 4369.8 3537.2 4616.2 4646.3 TRUE FALSE FALSE 4019.304242 4010.774017 3585.92241 3865.577052 5682.155403 4952.79683 4538.34465 3939.86055 4425.918282 4618.663601 0.870231 0.868384096 0.776398266 0.836947088 1.230259637 1.072344136 0.982609915 0.85303042 0.958268163 1 12.17325976 -5.843306504 24.50874525 0.911544507 1.033702105 0.304735536 0.106202521 29.26968129 8759.497232 0.017321083 0.031397099 1.43E-06 5.843306504 0.122157598 Y(ph)S(ph)SFGDLVQVLGTPGK ddPTM_HeLa_CUDC101_4h_R1 1 YSSFGDLVQVLGTPGK 16 0 Q5JS37 Q5JS37 NHLRC3 NHL repeat-containing protein 3 2 0 Y(0.998)S(0.921)S(0.081)FGDLVQVLGTPGK 83.692 0.0032403 0 1788.6 1853.3 2053.9 1744.5 1470.1 1630.4 1392 1597.3 1827.9 1997.9 TRUE FALSE FALSE 1578.943019 1910.397976 2164.940047 1815.64825 1361.653652 1599.302836 1445.689906 1779.130175 1752.553188 1986.016402 0.795030201 0.961924571 1.090091726 0.914216141 0.685620547 0.805281787 0.727934525 0.895828541 0.882446483 1 10.95566182 -5.842396139 9.442589704 0.92231037 0.777104882 0.434727101 0.089027663 0.303653825 32.67735129 0.015779569 0.028650124 1.44E-06 5.842396139 -0.145205488 SLDNNYST(ph)PNER ddPTM_HeLa_CUDC101_4h_R1 2 SLDNNYSTPNER 12 0 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;C9JZR2;O60716-19;O60716-11;O60716-13;O60716-21;O60716-9;O60716-17;O60716-10;O60716-18;O60716-27;O60716-29;O60716-25;O60716-26;H0YC95 O60716-5 CTNND1 Catenin delta-1 1 0 SLDNNYS(0.025)T(0.975)PNER;SLDNNYS(0.003)T(0.997)PNER ; 169.09 5.04E-06 79623000 8741.9 8077.7 7169.8 7888 8595.2 7962 6609.7 3602.4 8399.9 8163.3 TRUE FALSE FALSE 7717.187734 8326.564363 7557.421075 8209.706735 7961.14922 7810.138116 6864.638343 4012.482655 8053.652567 8114.744329 0.951008118 1.026103106 0.931319678 1.011702452 0.981072095 0.962462624 0.84594635 0.494468155 0.992471511 1 12.98632993 -4.214269731 1.853428401 0.979639342 0.299128278 0.968413007 0.026629573 0.114213954 0.360066586 0.003856269 0.139521233 6.11E-05 4.214269731 -0.680511064 down LTTTGQVT(ph)SPVK ddPTM_HeLa_CUDC101_4h_R1 3 LTTTGQVTSPVK 12 0 P49916-4;P49916-2;P49916-3;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 LTTTGQVT(0.5)S(0.5)PVK;LTTTGQVT(0.5)S(0.5)PVK;LTTTGQVT(0.943)S(0.057)PVK ;; 183.89 6.12E-10 350725000 20980.4 15682.3 15007.6 15058 14389.8 15300.1 12818.4 10003.4 16227.9 19152.6 TRUE FALSE FALSE 18521.10932 16165.45307 15818.95625 15672.13033 13328.29312 15008.27608 13312.80998 11142.14662 15558.97909 19038.67948 0.972814807 0.849084785 0.83088516 0.82317318 0.700063948 0.788304467 0.699250701 0.585237365 0.817229951 1 14.2166458 -5.842217419 0.380677589 1.013579164 0.568515699 0.615709039 0.073355077 0.436844948 0.098878323 0.016878631 0.077504698 1.44E-06 5.842217419 -0.445063465 PDPAK(ac)SAPAPK ddPTM_HeLa_CUDC101_4h_R1 3 PDPAKSAPAPK 11 1 Q5QNW6;Q5QNW6-2;Q93079 Q5QNW6;Q93079 HIST2H2BF;HIST1H2BH Histone H2B type 2-F;Histone H2B type 1-H 0 1 ;; PDPAK(1)SAPAPK;PDPAK(1)SAPAPK;PDPAK(1)SAPAPK 168.3 0.00011737 1144689400 7817.7 10542.24 16664.5 20998.32 16555.88 15416.322 16000.76 14696.825 2618 2690.1 FALSE TRUE FALSE 6901.321057 10867.03392 17565.43328 21854.72225 15334.58572 15122.28134 16617.91467 16369.85215 2510.084932 2674.099166 2.580802218 4.063811118 6.568729202 8.172741884 5.734486557 5.6550937 6.214397314 6.121632422 0.938665613 1 11.38483725 -7.143234238 1.602841253 1.613865945 6.430301788 0.890080646 0.774572078 0.090739771 0.446376333 0.162006749 0.201400596 7.19E-08 7.143234238 4.816435843 PDPAK(ac)SAPAPK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 PDPAKSAPAPKK 12 2 Q5QNW6;Q5QNW6-2;Q93079 Q5QNW6;Q93079 HIST2H2BF;HIST1H2BH Histone H2B type 2-F;Histone H2B type 1-H 0 2 ; PDPAK(1)SAPAPK(1)K;PDPAK(1)SAPAPK(1)K 128.36 0.00017949 6448100 2729.3 3940.4 5395.1 6178 4405.3 4214.2 4695.8 3542.2 685.25 915.07 FALSE TRUE FALSE 2409.375591 4061.799053 5686.775425 6429.965544 4080.329796 4133.821156 4876.918579 3945.42973 657.003705 909.6271229 2.648750824 4.465345141 6.251765456 7.068792675 4.485716941 4.544522752 5.361448066 4.337414343 0.72227805 1 9.829131462 -7.405878502 1.555783558 1.574601247 5.352817896 0.7976397 0.884893077 0.126315689 0.592071985 0.188758997 0.211480524 3.93E-08 7.405878502 3.778216649 (ac)MEGIS(ph)NFKTPSK ddPTM_HeLa_CUDC101_4h_R1 1 MEGISNFKTPSK 12 1 E5RIE1;Q96KB5;Q96KB5-2 E5RIE1 PBK Lymphokine-activated killer T-cell-originated protein kinase 1 0 MEGIS(0.892)NFKT(0.106)PS(0.002)K 81.972 0.0026133 45243000 2618 1897.1 2422 1807.9 2262.9 1710.2 1699 597.14 2024.8 2238.8 TRUE FALSE FALSE 2311.122009 1955.547402 2552.940646 1881.633976 2095.970375 1677.580784 1764.530999 665.1160039 1941.336887 2225.483518 1.038480847 0.878706756 1.147139768 0.845494456 0.941804493 0.753805081 0.792875339 0.298863595 0.872321395 1 11.1199031 -4.212253416 0.806754659 1.009106034 5.16E-17 0.761790883 0.106020951 0.730971619 0.324022582 0.013891999 0.670991736 6.13E-05 4.212253416 -1.009106034 down T(ph)SSAVWNSPPLQGAR ddPTM_HeLa_CUDC101_4h_R1 1 TSSAVWNSPPLQGAR 15 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 T(0.839)S(0.004)S(0.004)AVWNS(0.153)PPLQGAR 159.12 0.00035303 17909000 1585.4 1235.7 1211.6 1210.1 1241.3 994.05 927.96 475.47 1593.1 1532.3 TRUE FALSE FALSE 1399.561815 1273.770452 1277.102761 1259.453108 1149.731772 975.0901525 963.751728 529.5955829 1527.431744 1523.185811 0.918838532 0.836254148 0.838441871 0.826854543 0.754820432 0.640164939 0.632721051 0.347689414 1.002787534 1 10.57287623 -4.211310508 0.358752569 0.981322017 1.52E-16 0.937170023 0.047218273 1.009528223 0.08777851 0.014612825 0.431133693 6.15E-05 4.211310508 -0.981322017 down VS(ph)RLSTSTTIENIEITIK ddPTM_HeLa_CUDC101_4h_R1 1 VSRLSTSTTIENIEITIK 18 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 VS(0.32)RLS(0.195)T(0.195)S(0.195)T(0.047)T(0.047)IENIEITIK 58.914 0.025354 7058800 984.55 868.55 948.61 1031 1333.5 1343.2 1050.8 1017.5 919.4 1274.7 TRUE FALSE FALSE 869.1425415 895.308996 999.894726 1073.048636 1235.130362 1317.580698 1091.329708 1133.328087 881.5019429 1267.118028 0.685920745 0.706571114 0.789109384 0.846841899 0.974755575 1.039824759 0.861269183 0.894413987 0.695674691 1 10.3073352 -5.841075763 6.068116905 0.830093117 0.943421945 0.310927434 0.102079709 0.328228417 19.49798742 0.020091099 0.036886819 1.44E-06 5.841075763 0.113328828 VQT(ph)PEVDVK ddPTM_HeLa_CUDC101_4h_R1 3 VQTPEVDVK 9 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VQT(1)PEVDVK;VQT(1)PEVDVK;VQT(1)PEVDVK ;; 134.98 0.012245 118619000 20670.5 14825.6 14480.4 14913.9 14514.6 12749.4 11147 5905.9 16619.4 17396 TRUE FALSE FALSE 18247.53532 15282.35916 15263.25422 15522.15331 13443.88688 12506.22644 11576.94352 6578.203784 15934.3413 17292.52782 1.055226599 0.883755072 0.882650263 0.897621994 0.777439078 0.723215632 0.669476646 0.380407298 0.921458185 1 14.07786116 -4.211155583 0.426293204 1.028412607 1.81E-17 0.884365855 0.062620066 0.994280646 0.1180337 0.014503432 0.522309254 6.15E-05 4.211155583 -1.028412607 down GRDVESVQT(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 GRDVESVQTPSK 12 1 P46013 P46013 MKI67 Antigen KI-67 1 0 GRDVESVQT(0.924)PS(0.076)K 108.06 0.0072974 18836000 3308.8 3449.1 3695.5 3483.5 3582.1 3311.3 2670.7 1019.7 3109.9 3505.2 TRUE FALSE FALSE 2920.94748 3555.362683 3895.289908 3625.572187 3317.85562 3248.14247 2773.709794 1135.778526 2981.708606 3484.350915 0.838304623 1.0203802 1.117938464 1.040530152 0.952216267 0.932208767 0.796047775 0.325965597 0.855742914 1 11.76667421 -4.209784505 1.933316806 0.954735929 0.07737952 0.854525307 0.080017522 0.297758248 1.035503703 0.013524987 0.485664499 6.17E-05 4.209784505 -0.877356409 down S(ph)PTEPGPER ddPTM_HeLa_CUDC101_4h_R1 1 SPTEPGPER 9 0 P30291 P30291 WEE1 Wee1-like protein kinase 1 0 S(0.997)PT(0.003)EPGPER 90.149 0.028464 6759300 1316.5 1094.9 951.52 1036.5 740.89 737.9 876.45 709.99 1022.4 1116.9 TRUE FALSE FALSE 1162.181866 1128.632571 1002.962049 1078.77295 686.2360208 723.8257869 910.2549701 790.8123917 980.2562393 1110.256629 1.04676868 1.016551076 0.903360559 0.971642881 0.618087749 0.651944576 0.819859973 0.712278919 0.882909603 1 10.11667747 -5.840544274 5.925026528 1.010539933 0.706258208 0.754988901 0.073259002 0.05874509 3.38433639 0.009697279 0.017826662 1.44E-06 5.840544274 -0.304281726 PVSVAGSPLS(ph)PGPVR ddPTM_HeLa_CUDC101_4h_R1 2 PVSVAGSPLSPGPVR 15 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 PVSVAGS(0.231)PLS(0.769)PGPVR;PVSVAGS(0.001)PLS(0.999)PGPVR ; 158.65 7.69E-05 176543000 4114 3956.8 3321.5 3416.5 3406.2 2911.7 3183.6 2731.2 3102.5 3720.2 TRUE FALSE FALSE 3631.763156 4078.704318 3501.070337 3555.839637 3154.931412 2856.164174 3306.392518 3042.108768 2974.613637 3698.072085 0.982069325 1.102927208 0.946728527 0.961538757 0.853128695 0.772338697 0.89408547 0.822620192 0.804368754 1 11.85255763 -5.839454227 2.395607434 0.997934828 0.831635253 0.383938882 0.076740604 0.108423657 1.267095825 0.006766697 0.013820972 1.45E-06 5.839454227 -0.166299575 GRAEGEWEDQEALDY(ph)FSDKESGKQK ddPTM_HeLa_CUDC101_4h_R1 2 GRAEGEWEDQEALDYFSDKESGKQK 25 3 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 GRAEGEWEDQEALDY(0.512)FS(0.244)DKES(0.244)GKQK;GRAEGEWEDQEALDY(0.712)FS(0.144)DKES(0.144)GKQK ; 43.611 0.02138 16918900 1941.19 2690.4 2987.9 3055.3 6004.2 3912.8 4186.3 6069.7 3125.7 2017.94 TRUE FALSE FALSE 1713.646651 2773.288035 3149.434912 3179.90834 5561.282128 3838.169859 4347.766993 6760.650113 2996.857323 2005.937203 0.854287287 1.382539808 1.570056584 1.5852482 2.772410881 1.913404793 2.167449204 3.37031992 1.49399359 1 10.97006073 -5.83944409 0.569164804 0.895270591 2.908609441 0.677824855 0.419391975 0.365529132 0.19834015 0.083968655 0.357374948 1.45E-06 5.83944409 2.013338849 PEPAK(ac)SAPAPK ddPTM_HeLa_CUDC101_4h_R1 4 PEPAKSAPAPK 11 1 O60814;P57053;P62807;Q16778 O60814;P62807;Q16778 HIST1H2BK;H2BFS;HIST1H2BC;HIST2H2BE Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E 0 1 ;;; PEPAK(1)SAPAPK;PEPAK(1)SAPAPK;PEPAK(1)SAPAPK;PEPAK(1)SAPAPK 158.47 0.00013907 7050486800 3824.12 41089.96 7945.27 31142.07 12982.75 14117.72 12853.86 10280.72 2060.61 3013.64 FALSE TRUE FALSE 3375.862451 42355.89296 8374.815329 32412.17822 12025.0384 13848.44801 13349.63769 11451.03561 1975.670784 2995.714735 1.126897168 14.13882719 2.795598403 10.81951424 4.014079931 4.622752577 4.456244625 3.822471971 0.65949897 1 11.54868454 -7.44892841 24.9999597 1.055868794 6.285088717 0.357710525 3.345280171 102.8119227 34756.86479 0.525457219 0.60087786 3.56E-08 7.44892841 5.229219923 PEPAK(ac)SAPAPK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 PEPAKSAPAPKK 12 2 O60814;P57053;P62807;Q16778 O60814;P62807;Q16778 HIST1H2BK;H2BFS;HIST1H2BC;HIST2H2BE Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E 0 2 ; PEPAK(1)SAPAPK(1)K;PEPAK(1)SAPAPK(1)K 162.68 1.23E-05 108601000 8359.8 13758.5 19121.9 23100.9 16826.9 16000.8 16668.8 13544.5 2484.86 2320.66 FALSE TRUE FALSE 7379.876917 14182.38308 20155.68775 24043.05455 15585.61311 15695.6114 17311.7212 15086.35113 2382.433019 2306.856611 3.199105172 6.147925714 8.737295442 10.4224313 6.756212344 6.803895536 7.504463483 6.539787111 1.032761641 1 11.17171262 -7.307087332 1.747574552 1.820313956 7.813368661 0.84405047 1.171605072 0.10363916 0.60063335 0.248558189 0.28974284 4.93E-08 7.307087332 5.993054706 NINTFVET(ph)PVQK ddPTM_HeLa_CUDC101_4h_R1 3 NINTFVETPVQK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 NINTFVET(1)PVQK;NINTFVET(1)PVQK;NINTFVET(1)PVQK ;; 167.22 8.40E-05 69414000 9585.2 7982.2 8795.8 8711 8530.1 8754.1 7125.3 2518.07 7501.5 10890.9 TRUE FALSE FALSE 8461.637386 8228.122121 9271.327554 9066.272232 7900.851517 8587.130128 7400.125208 2804.71691 7192.284995 10826.12044 0.78159461 0.760024994 0.856385037 0.837444242 0.729795272 0.793186273 0.683543588 0.259069435 0.664345555 1 13.40222872 -4.208739703 1.242520273 0.868126898 4.31E-40 0.703000206 0.099864722 0.622200536 0.735353607 0.015431726 0.710744817 6.18E-05 4.208739703 -0.868126898 down PEPAK(ac)SAPAPK(ac)KGSK ddPTM_HeLa_CUDC101_4h_R1 1 PEPAKSAPAPKKGSK 15 3 O60814;P57053;P62807;Q16778 O60814;P62807;Q16778 HIST1H2BK;H2BFS;HIST1H2BC;HIST2H2BE Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E 0 2 PEPAK(1)SAPAPK(0.547)K(0.453)GSK 99.238 0.0098497 7875500 2337.6 3835.8 5243.9 5239.3 6606.8 3487.1 3658.1 4945 1003.5 821.55 FALSE TRUE FALSE 2063.590072 3953.976451 5527.401096 5452.9813 6119.429527 3420.589377 3799.194142 5507.918812 962.1353053 816.6633841 2.526855142 4.841623279 6.768273445 6.677146798 7.493209131 4.188493624 4.652093159 6.744417491 1.178129599 1 9.673597734 -7.291723953 1.805025538 1.5745095 6.039682809 0.808187484 0.99082726 0.11341369 0.699953755 0.204368766 0.239628908 5.11E-08 7.291723953 4.465173309 PEPAK(ac)SAPAPKK(ac)GSK ddPTM_HeLa_CUDC101_4h_R1 1 PEPAKSAPAPKKGSK 15 3 O60814;P57053;P62807;Q16778 O60814;P62807;Q16778 HIST1H2BK;H2BFS;HIST1H2BC;HIST2H2BE Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E 0 2 PEPAK(1)SAPAPK(0.461)K(0.539)GSK 100.04 0.0098979 6995100 2586.7 4574.9 5965.6 6832.1 8613.3 4719 5268.7 5148.9 1458.4 928.68 FALSE TRUE FALSE 2283.490947 4715.847246 6288.118381 7110.742569 7977.914019 4628.992937 5471.915524 5735.029963 1398.284135 923.1561701 2.473569501 5.108395957 6.811543469 7.702643171 8.641998264 5.014311866 5.927399612 6.212415786 1.514677776 1 9.850430919 -7.218680232 1.726563862 1.553405894 6.759206164 0.850165056 0.953722125 0.098271969 0.556060413 0.198849844 0.239782609 6.04E-08 7.218680232 5.20580027 LSQSSQDSS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 3 LSQSSQDSSPVR 12 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 LSQSSQDS(0.004)S(0.996)PVR;LSQSSQDS(0.004)S(0.996)PVR;LSQSSQDS(0.004)S(0.996)PVR ;; 178.67 1.90E-07 763320000 12071.5 9853.6 10168.2 8854.3 9155.5 8118.5 7762.2 2864.39 10688.3 11025.4 TRUE FALSE FALSE 10656.49707 10157.17774 10717.92365 9215.416626 8480.117005 7963.653139 8061.590654 3190.460579 10247.72375 10959.82043 0.972324057 0.926764978 0.977928764 0.840836461 0.773745981 0.726622593 0.735558644 0.291105187 0.935026611 1 13.41993654 -4.208562194 0.535797668 0.987403642 1.71E-17 0.871217811 0.072066731 0.895666287 0.165708605 0.012888447 0.557888965 6.19E-05 4.208562194 -0.987403642 down PEPSK(ac)SAPAPK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 PEPSKSAPAPKK 12 2 U3KQK0;Q99877 U3KQK0 HIST1H2BN Histone H2B;Histone H2B type 1-N 0 2 ; PEPSK(1)SAPAPK(1)K;PEPSK(1)SAPAPK(1)K 178.1 2.66E-07 6697400 2160.77 4076.9 6203.1 7876 5992.1 5229.5 5311.9 4115.1 588.13 686.71 FALSE TRUE FALSE 1907.487816 4202.504457 6538.458349 8197.217323 5550.074721 5129.756 5516.781762 4583.54635 563.8870325 682.6254184 2.794340446 6.156384371 9.578398597 12.00836814 8.130483529 7.514745074 8.0817116 6.714584935 0.826056307 1 9.414950326 -7.180636573 2.149227328 1.73296833 8.709135637 0.835385242 1.416369754 0.093570972 0.826045721 0.275796581 0.336965007 6.60E-08 7.180636573 6.976167307 SGAQASSTPLSPT(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 SGAQASSTPLSPTR 14 0 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 SGAQASSTPLS(0.135)PT(0.865)R;SGAQASSTPLS(0.233)PT(0.767)R ; 145.94 0.0016926 2896874000 5558.2 4831.97 4698.07 4478.32 4548.11 3804.45 2905.46 2111.08 5732.7 5672.1 TRUE FALSE FALSE 4906.676222 4980.837268 4952.061875 4660.965247 4212.604986 3731.886455 3017.524565 2351.396814 5496.39568 5638.362097 0.870230776 0.883383717 0.878280215 0.826652344 0.747132751 0.661874209 0.535177506 0.417035439 0.974821337 1 12.46106042 -4.208167659 0.397987814 0.957351643 6.19E-14 0.980396665 0.025191755 0.773870559 0.080793805 0.010567544 0.355241651 6.19E-05 4.208167659 -0.957351643 down PEPTK(ac)SAPAPK ddPTM_HeLa_CUDC101_4h_R1 3 PEPTKSAPAPK 11 1 P58876 P58876 HIST1H2BD Histone H2B type 1-D 0 1 ;; PEPTK(1)SAPAPK;PEPTK(1)SAPAPK;PEPTK(1)SAPAPK 169.21 0.0003039 898016000 2315.827 19031.9 5417.61 15008.2 6669.41 6610.6 7377.44 5501.41 890.87 1820.54 FALSE TRUE FALSE 2044.36927 19618.25028 5710.502384 15620.29927 6177.420912 6484.513819 7661.990332 6127.668277 854.1479615 1809.711347 1.12966594 10.84054112 3.155476918 8.631376099 3.413484101 3.583175753 4.233819025 3.385992074 0.471980221 1 10.82154389 -7.452909939 24.99993097 1.057165077 5.239972201 0.416706145 2.410175153 111.0502192 39678.32763 0.381580824 0.436345761 3.52E-08 7.452909939 4.182807124 PEPTK(ac)SAPAPK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 PEPTKSAPAPKK 12 2 P58876 P58876 HIST1H2BD Histone H2B type 1-D 0 2 ; PEPTK(1)SAPAPK(1)K;PEPTK(1)SAPAPK(1)K 210.95 4.75E-16 19381100 3907.8 7154.8 10338.9 11277.9 8925.3 8029.1 8023 6543.2 1272.63 1072.2 FALSE TRUE FALSE 3449.733608 7375.230907 10897.85221 11737.86151 8266.898401 7875.958295 8332.449798 7288.051439 1220.171653 1065.822507 3.236686771 6.91975527 10.22482837 11.01296082 7.75635563 7.389558998 7.817858738 6.837959786 1.144816933 1 10.05775149 -7.293652332 2.124382543 1.881568578 8.522190448 0.848088304 1.280521125 0.09391234 0.801868849 0.269280477 0.315438654 5.09E-08 7.293652332 6.64062187 VPAS(ph)PLPGLER ddPTM_HeLa_CUDC101_4h_R1 4 VPASPLPGLER 11 0 E7ETY4;E9PC69;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-6;Q7KZI7-3;Q7KZI7-14;Q7KZI7-9;Q7KZI7-13;Q7KZI7-4;Q7KZI7-16;Q7KZI7-5;Q7KZI7-15;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER ;;; 127.52 0.0026159 680254000 9582.6 7274.2 7488.1 7798.9 6710.7 6624 6773 8208.9 6471.8 7723.2 TRUE FALSE FALSE 8459.342154 7498.30948 7892.929336 8116.972852 6215.665031 6497.658236 7034.236879 9143.367994 6205.029665 7677.262063 1.101869662 0.976690573 1.028091691 1.057274427 0.809620016 0.846350976 0.916242903 1.19096729 0.808234708 1 12.90637618 -5.838487231 25 1.042179601 0.932278925 0 0.124255109 40.77696842 13229.31816 0.014939343 0.027079866 1.45E-06 5.838487231 -0.109900676 TEGAEAT(ph)PGAQK ddPTM_HeLa_CUDC101_4h_R1 2 TEGAEATPGAQK 12 0 H3BM18;X6RHM1;Q16666-3;Q16666-2;Q16666 H3BM18 IFI16 Gamma-interferon-inducible protein 16 1 0 TEGAEAT(1)PGAQK;TEGAEAT(1)PGAQK ; 150.14 0.0030033 10328300 6238.8 4866.1 6229.5 5765.5 5657.4 6154.6 4583.5 1645.1 4705.6 6751 TRUE FALSE FALSE 5507.497321 5016.018773 6566.285613 6000.642011 5240.064873 6037.211259 4760.28713 1832.371534 4511.633176 6710.844752 0.820686147 0.747449682 0.978458876 0.894170888 0.780835359 0.899620164 0.709342461 0.273046331 0.672289904 1 12.71227867 -4.205925265 1.732061815 0.896258392 1.15E-12 0.720238634 0.104639356 0.342314509 0.895666334 0.013314756 0.526705075 6.22E-05 4.205925265 -0.896258392 down PEPVK(ac)SAPVPK(ac)K(ac)GSK ddPTM_HeLa_CUDC101_4h_R1 1 PEPVKSAPVPKKGSK 15 3 Q99879 Q99879 HIST1H2BM Histone H2B type 1-M 0 3 PEPVK(1)SAPVPK(1)K(1)GSK 143.64 5.71E-12 0 0 73.034 203.26 379.49 456.98 389.02 507.15 278.21 0 0 FALSE TRUE FALSE 0 75.28409097 214.2488504 394.9672425 423.2694958 381.6000917 526.7109454 309.8803018 0 0 0 LDADS(ph)DS(ph)GDDSDKR ddPTM_HeLa_CUDC101_4h_R1 2 LDADSDSGDDSDKR 14 1 O60333-3 O60333-3 KIF1B Kinesin-like protein KIF1B 2 0 LDADS(0.999)DS(0.917)GDDS(0.084)DKR;LDADS(1)DS(0.993)GDDS(0.007)DKR ; 97.203 0.018041 20754100 11422.4 9693.9 9052.3 9106.8 8965 8909.1 7778.8 7342.1 9852.1 9498.3 TRUE FALSE FALSE 10083.48359 9992.557569 9541.69472 9478.214667 8303.669811 8739.173761 8078.830922 8177.894986 9445.992268 9441.803689 1.06796158 1.058331427 1.010579656 1.003856358 0.879458002 0.925583082 0.855644873 0.866136943 1.000443621 1 13.20484677 -5.837180443 2.372622622 1.033926485 0.879210719 0.858133355 0.028173864 0.085894137 0.984802668 0.004957729 0.010155639 1.45E-06 5.837180443 -0.154715766 PFDPQYYEDEFEDEEMLDEEGR ddPTM_HeLa_CUDC101_4h_R1 1 PFDPQYYEDEFEDEEMLDEEGR 22 0 Q8WVC0 Q8WVC0 LEO1 RNA polymerase-associated protein LEO1 0 0 105.92 1.60E-05 0 280.19 149.32 128.4 152.99 0 61.02 157.75 139.97 183.96 166.38 FALSE FALSE TRUE 247.3465529 153.9203722 135.3416924 159.2295935 0 59.85614517 163.8344703 155.903619 176.3770909 165.3903644 1.495531822 0.93064897 0.818316671 0.962750122 0 0.361908297 0.990592596 0.942640278 1.066429061 1 7.369731375 -6.705386487 1.727026756 1.230129493 0.622094129 0.343804103 0.313198885 0.276332992 1.680203137 0.059809931 0.088818497 1.97E-07 6.705386487 -0.608035363 TVSLGAGAKDELHIVEAEAMNY(ph)EGSPIKVTLATLK ddPTM_HeLa_CUDC101_4h_R1 4 TVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLK 35 2 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 1 0 TVSLGAGAKDELHIVEAEAMNY(0.686)EGS(0.301)PIKVT(0.011)LAT(0.002)LK;TVSLGAGAKDELHIVEAEAMNY(0.881)EGS(0.119)PIKVTLATLK;TVSLGAGAKDELHIVEAEAMNY(0.526)EGS(0.465)PIKVT(0.008)LAT(0.001)LK;TVSLGAGAKDELHIVEAEAMNY(0.75)EGS(0.249)PIKVTLATLK ;;; 111.18 3.53E-15 2062908000 16841.5 16373.6 15390.4 15744.8 23204.1 19597.6 18485.1 19169.5 18712.5 16609.3 TRUE FALSE FALSE 14867.3649 16878.05121 16222.45158 16386.941 21492.37977 19223.80843 19198.0765 21351.67839 17941.16283 16510.50714 0.900478996 1.022261222 0.982553197 0.992515909 1.301739528 1.164337852 1.162779334 1.293217598 1.086651226 1 14.01109682 -5.836092702 6.382609678 0.961613289 1.220416091 0.736775909 0.066224804 0.062470932 4.200610685 0.008677472 0.015904227 1.46E-06 5.836092702 0.258802802 PGFSIADK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 PGFSIADKK 9 1 P62913;Q5VVC8;P62913-2 P62913 RPL11 60S ribosomal protein L11 0 1 ; PGFSIADK(1)K;PGFSIADK(1)K 116.52 0.002147 3396600 6836.2 2613.43 2135.37 2333.03 4091.5 4104.7 4427.5 2894.5 2872.5 3313.7 FALSE TRUE FALSE 6034.870999 2693.946681 2250.814561 2428.181048 3789.678196 4026.409686 4598.270158 3223.99818 2754.094334 3293.989965 1.832085423 0.817836942 0.683309477 0.737154962 1.150482617 1.22235032 1.395957549 0.97875167 0.836096759 1 11.68562044 -7.234551511 24.98879351 1.392929289 1.005645602 0.016924698 0.330087793 934.5152148 868511.9054 0.063204709 0.077399425 5.83E-08 7.234551511 -0.387283687 LSSSDRYS(ph)DASDDSFSEPR ddPTM_HeLa_CUDC101_4h_R1 2 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 1 0 LS(0.004)S(0.015)S(0.158)DRY(0.005)S(0.456)DAS(0.272)DDS(0.088)FS(0.002)EPR;LSS(0.001)SDRYS(0.788)DAS(0.167)DDS(0.034)FS(0.011)EPR ; 176.46 3.88E-07 10911700 1648.24 1715.54 1711.18 1512.47 2006.33 2246.29 1771.63 1918.62 1954.58 1601.28 TRUE FALSE FALSE 1455.035806 1768.393754 1803.691567 1574.155064 1858.327033 2203.445761 1839.962363 2137.027945 1874.011385 1591.755515 0.914107595 1.110970709 1.133146108 0.988942742 1.167470139 1.384286556 1.15593277 1.342560415 1.177323632 1 10.63640305 -5.835532072 0.694758403 0.96362304 1.313924369 0.381298455 0.110507524 0.36579861 0.313777155 0.017775985 0.067483552 1.46E-06 5.835532072 0.350301329 PGGDTIFGK(ac)IIR ddPTM_HeLa_CUDC101_4h_R1 1 PGGDTIFGKIIR 12 1 D6RC06;D6REP8;D6RE99;D6RD60;P49773 D6RC06 HINT1 Histidine triad nucleotide-binding protein 1 0 1 PGGDTIFGK(1)IIR 87.568 0.027615 360030 0 0 0 0 0 0 0 0 0 65.972 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 65.57959561 0 0 0 0 0 0 0 0 0 1 6.0351751 -9.157829429 0.677150941 1.083625666 2.50E-23 0 0.307667284 0.066591669 0.049088893 0.041658111 0.0090835 6.95E-10 9.157829429 -1.083625666 GNKS(ph)PSPPDGSPAAT(ph)PEIR ddPTM_HeLa_CUDC101_4h_R1 1 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-11;O00499-2;O00499;O00499-9;O00499-10;O00499-7;O00499-8;O00499-4;O00499-3;O00499-5 O00499-6 BIN1 Myc box-dependent-interacting protein 1 2 0 GNKS(0.979)PS(0.025)PPDGS(0.385)PAAT(0.611)PEIR 152.63 0.00029436 21887000 2421 1941.7 2367.6 2133.8 1977.2 1910.1 1862.2 1896.5 2436.1 2409.2 TRUE FALSE FALSE 2137.21405 2001.521476 2495.599618 2220.825587 1831.345895 1873.668025 1934.025678 2112.389894 2335.682927 2394.869971 0.892413398 0.835753715 1.042060591 0.927326165 0.764695335 0.78236733 0.807570223 0.882047844 0.975285905 1 11.22573161 -5.835417564 6.57403723 0.945432089 0.807445291 0.552555601 0.06019202 0.134055493 9.502837556 0.009823147 0.017983153 1.46E-06 5.835417564 -0.137986798 FSHLVGY(ph)GARY(ph)YSYLMS(ph)RAVAS(ph)MVWK ddPTM_HeLa_CUDC101_4h_R1 1 FSHLVGYGARYYSYLMSRAVASMVWK 26 2 Q99797 Q99797 MIPEP Mitochondrial intermediate peptidase 4 0 FS(0.168)HLVGY(0.85)GARY(0.821)Y(0.135)S(0.029)Y(0.043)LMS(0.967)RAVAS(0.987)MVWK 59.814 0.02815 6260200 809.08 895.07 750.57 696.18 644.82 580.55 613.05 427.88 660.95 839.21 TRUE FALSE FALSE 714.2408689 922.6460458 791.1480846 724.5732295 597.2529133 569.476976 636.6955439 476.5881296 633.7053612 834.2183416 0.856179771 1.106000671 0.948370523 0.86856545 0.715943157 0.682647393 0.763224101 0.57129903 0.759639689 1 9.704281222 -5.835288675 2.420403625 0.946916792 0.681613761 0.610551466 0.095102656 0.126087959 1.504506086 0.012624639 0.025785864 1.46E-06 5.835288675 -0.26530303 FSGEEGEIEDDES(ph)GTENREEKDNIQPTTE ddPTM_HeLa_CUDC101_4h_R1 5 FSGEEGEIEDDESGTENREEKDNIQPTTE 29 2 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 FSGEEGEIEDDES(0.842)GT(0.157)ENREEKDNIQPT(0.001)TE;FS(0.006)GEEGEIEDDES(0.495)GT(0.495)ENREEKDNIQPT(0.004)T(0.001)E;FSGEEGEIEDDES(0.445)GT(0.445)ENREEKDNIQPT(0.102)T(0.009)E;FSGEEGEIEDDES(0.803)GT(0.196)ENREEKDNIQPTTE;FSGEEGEIEDDES(0.844)GT(0.156)ENREEKDNIQPTTE ;;;; 69.435 6.57E-05 123501000 16114.6 12980.2 12853.3 12943.1 13975.4 13080.2 12447.9 11221.5 14249.4 13504 TRUE FALSE FALSE 14225.67102 13380.10458 13548.18828 13470.97556 12944.46258 12830.71698 12928.01967 12498.9102 13662.0337 13423.67761 1.059744686 0.996754017 1.009275451 1.003523472 0.964300765 0.955827259 0.963075846 0.931109236 1.017756393 1 13.71249235 -5.834874436 1.006222419 1.026701252 0.945584522 0.740022141 0.017922747 0.256698904 0.503433569 0.004186336 0.012236207 1.46E-06 5.834874436 -0.08111673 STDSEVSQS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 4 STDSEVSQSPAK 12 0 A0A0G2JNJ7;H7C148;H7C3F5;A0A2H2FJL5;B7Z6J7;O75175 A0A0G2JNJ7 CNOT3 CCR4-NOT transcription complex subunit 3 1 0 STDSEVS(0.013)QS(0.987)PAK;STDS(0.001)EVS(0.125)QS(0.875)PAK;STDSEVS(0.002)QS(0.998)PAK;STDSEVSQS(1)PAK ;;; 217.19 2.72E-24 868940000 34620.6 29114.8 28494.9 27679.2 30678.6 27016 25830 24111.4 31823.9 30965.9 TRUE FALSE FALSE 30562.42575 30011.79248 30035.42049 28808.07742 28415.5008 26500.71481 26826.27175 26856.14431 30512.10537 30781.71345 0.99287604 0.974987716 0.975755314 0.93588284 0.923129274 0.860923966 0.871500276 0.87247074 0.991241291 1 14.90978592 -5.83389165 0.872442373 0.996833012 0.86054988 0.965435472 0.009719477 0.06751791 0.096918354 0.001611695 0.005211903 1.47E-06 5.83389165 -0.136283132 AHTPT(ph)PGIYMGRPTHSGGGGGGGGGGGGGGGGR ddPTM_HeLa_CUDC101_4h_R1 9 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 33 1 Q13595;Q13595-4;Q13595-3 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 AHT(0.218)PT(0.774)PGIY(0.009)MGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.211)PT(0.779)PGIY(0.01)MGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.041)PT(0.925)PGIY(0.03)MGRPT(0.003)HS(0.001)GGGGGGGGGGGGGGGGR;AHT(0.024)PT(0.532)PGIY(0.423)MGRPT(0.02)HSGGGGGGGGGGGGGGGGR;AHT(0.292)PT(0.687)PGIY(0.02)MGRPT(0.001)HSGGGGGGGGGGGGGGGGR;AHT(0.385)PT(0.615)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.233)PT(0.761)PGIY(0.006)MGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.055)PT(0.904)PGIY(0.036)MGRPT(0.005)HSGGGGGGGGGGGGGGGGR;AHT(0.347)PT(0.652)PGIY(0.001)MGRPTHSGGGGGGGGGGGGGGGGR ;;;;;;;; 91.335 1.54E-09 484881300 10173.05 9115.52 9803.31 9784.71 12085.34 10500.15 10589.03 10203.76 11898.5 11311.06 TRUE FALSE FALSE 8980.5805 9396.358367 10333.30659 10183.77277 11193.82855 10299.87713 10997.45243 11365.31479 11408.03879 11243.78131 0.79871533 0.835693803 0.919024153 0.905724906 0.995557298 0.916051002 0.97809199 1.010808951 1.01460874 1 13.45683968 -5.833803072 6.617888667 0.897935822 0.970980359 0.158523276 0.06594588 0.310771849 22.67215505 0.012045917 0.022050569 1.47E-06 5.833803072 0.073044537 LAT(ph)VHMS(ph)RMINK ddPTM_HeLa_CUDC101_4h_R1 1 LATVHMSRMINK 12 1 K7EQQ1;O96005-3;O96005-4;O96005 K7EQQ1 CLPTM1 Cleft lip and palate transmembrane protein 1 2 0 LAT(1)VHMS(1)RMINK 44.367 0.0033737 0 405.67 479.05 503.02 439.52 457.9 612.03 609.25 440.74 575.03 449.69 TRUE FALSE FALSE 358.1179776 493.8089627 530.2147828 457.4455254 424.1216293 600.3565475 632.7489766 490.9120601 551.32702 447.0152239 0.801131502 1.104680414 1.186122428 1.023333213 0.948785649 1.343033784 1.4154976 1.098199868 1.233351775 1 8.804180156 -5.833497221 0.668026069 0.916403604 1.302189984 0.049377496 0.171533071 0.609061009 0.477018269 0.031250968 0.122019929 1.47E-06 5.833497221 0.38578638 INS(ph)SPNVNTTASGVEDLNIIQVTIPDDDNER ddPTM_HeLa_CUDC101_4h_R1 1 INSSPNVNTTASGVEDLNIIQVTIPDDDNER 31 0 P78347-2;P78347-4;P78347-3;P78347;A0A494C1K3 P78347-2 GTF2I General transcription factor II-I 1 0 INS(0.588)S(0.407)PNVNT(0.002)T(0.002)ASGVEDLNIIQVTIPDDDNER 105.42 1.70E-10 18966000 1071.8 1116.5 1147.6 1073.7 1675.5 1418.2 1211.4 1433.6 1111.4 1173.7 TRUE FALSE FALSE 946.1652287 1150.898042 1209.642727 1117.490127 1551.901703 1391.150198 1258.124104 1596.795229 1065.587622 1166.71878 0.810962543 0.986439973 1.036790311 0.957805896 1.330142044 1.192361194 1.078343921 1.36862049 0.913320022 1 10.18824115 -5.832042314 6.815696626 0.927477727 1.226516376 0.691724941 0.094396142 0.101669846 7.935117254 0.015924098 0.029122597 1.47E-06 5.832042314 0.29903865 LSSGPEQITLEASSTEGHPGAPS(ph)PQHTDQTEAFQK ddPTM_HeLa_CUDC101_4h_R1 1 LSSGPEQITLEASSTEGHPGAPSPQHTDQTEAFQK 35 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 LSSGPEQIT(0.001)LEAS(0.026)S(0.211)T(0.211)EGHPGAPS(0.438)PQHT(0.075)DQT(0.039)EAFQK 51.976 0.0080767 11598000 1356.5 825.97 1100.1 1156.2 1487.1 1492.8 1041 1286.8 1260.1 1261.4 TRUE FALSE FALSE 1197.493126 851.4171567 1159.574734 1203.354834 1377.399596 1464.327327 1081.151719 1433.284111 1208.158145 1253.897137 0.955017036 0.679016748 0.924776602 0.959691827 1.098494889 1.167820935 0.862233183 1.143063549 0.963522533 1 10.29220329 -5.831562705 6.915385183 0.947254385 1.060129525 0.271186382 0.116088345 0.30249685 24.30303983 0.017735265 0.032419576 1.47E-06 5.831562705 0.112875141 YMNSDTTS(ph)PELR ddPTM_HeLa_CUDC101_4h_R1 3 YMNSDTTSPELR 12 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 YMNSDTT(0.028)S(0.971)PELR;YMNSDTT(0.031)S(0.968)PELR;YMNSDT(0.008)T(0.225)S(0.767)PELR ;; 169.58 1.00E-06 172725000 10323.4 8540.1 8151 8162.6 8600.6 8200.8 7175.1 7328.3 8315.1 8444.8 TRUE FALSE FALSE 9113.306701 8803.210358 8591.667715 8495.50611 7966.150873 8044.383403 7451.84601 8162.52405 7972.348059 8394.569954 1.085619246 1.048679135 1.023479197 1.012023982 0.948964737 0.958284158 0.887698364 0.972357619 0.949702975 1 13.0352407 -5.83016508 1.613194029 1.041654645 0.932929716 0.43522457 0.040724447 0.182243341 0.958168043 0.005786698 0.013220958 1.48E-06 5.83016508 -0.108724929 S(ph)EGSEYEEIPK ddPTM_HeLa_CUDC101_4h_R1 2 SEGSEYEEIPK 11 0 P48634 P48634 PRRC2A Protein PRRC2A 1 0 S(1)EGSEYEEIPK;S(1)EGSEYEEIPK ; 215.77 5.68E-24 23237000 6901 5988.1 5412.2 4967.3 4377.8 4007.5 4301.1 2869.9 6667.9 5022.9 TRUE FALSE FALSE 6092.075241 6172.586263 5704.799903 5169.887965 4054.858416 3931.063614 4466.994868 3196.597815 6393.04634 4993.023567 1.220117462 1.236242165 1.142554171 1.035422304 0.812104802 0.787311248 0.894647263 0.640212843 1.280395787 1 12.285698 -5.830151535 2.909857233 1.120756397 0.785796102 0.771657775 0.098547245 0.114949995 1.975790115 0.016153695 0.032077023 1.48E-06 5.830151535 -0.334960295 SSTVAS(ph)LDTDSTK ddPTM_HeLa_CUDC101_4h_R1 2 SSTVASLDTDSTK 13 0 C9IZZ8;C9J6Y2;C9J0J6;C9JZ07;G3V1A3;C9J5T5;C9JBU8;A8MPU2;O14713-2;O14713 C9IZZ8 ITGB1BP1 Integrin beta-1-binding protein 1 1 0 SST(0.002)VAS(0.978)LDT(0.02)DSTK;SSTVAS(1)LDTDSTK ; 277.31 4.02E-86 82463000 7120.2 6658 5980.4 5988.8 6630.6 5417.4 5697.5 5194.4 7485.8 6825 TRUE FALSE FALSE 6285.58095 6863.125088 6303.718514 6233.04915 6141.473848 5314.072121 5917.254484 5785.7095 7177.232156 6784.404596 0.926474956 1.011603154 0.929148376 0.918731933 0.90523402 0.783277596 0.872184788 0.852795469 1.057901553 1 12.72800649 -5.828555001 1.395659282 0.966989128 0.840160587 0.661173396 0.044832152 0.184328332 0.719644726 0.006154124 0.014960345 1.48E-06 5.828555001 -0.126828541 AET(ph)PPLPIPPPPPDIQPLER ddPTM_HeLa_CUDC101_4h_R1 2 AETPPLPIPPPPPDIQPLER 20 0 U3KPW8;A0A669KB72;Q8IX15;Q8IX15-3 U3KPW8 HOMEZ Homeobox and leucine zipper protein Homez 1 0 AET(1)PPLPIPPPPPDIQPLER;AET(1)PPLPIPPPPPDIQPLER ; 213.36 3.94E-24 64931000 2078.36 1683.11 1677.49 1555.16 1805.61 1571.96 1382.5 1460.75 2163.3 1741.26 TRUE FALSE FALSE 1834.737791 1734.964624 1768.180184 1618.586147 1672.413748 1541.977482 1435.823488 1627.035875 2074.127858 1730.902908 1.059988855 1.002346588 1.021536318 0.935110883 0.966208873 0.890851517 0.829522835 0.939992571 1.198292434 1 10.75730909 -5.827637232 1.070217629 1.027808972 0.8802508 0.550203832 0.063935073 0.194564507 0.435250544 0.006084168 0.017177906 1.49E-06 5.827637232 -0.147558172 TLS(ph)PTPS(ph)AEGYQDVR ddPTM_HeLa_CUDC101_4h_R1 1 TLSPTPSAEGYQDVR 15 0 O14639-3;O14639-5;J3QSX6;O14639-4;H0Y7N6;F6XFR5;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639;A0A494C1P1;A0A494C1G0 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 2 0 T(0.497)LS(0.503)PTPS(1)AEGYQDVR 135.61 0.0052732 46536000 5658.2 5079.7 4913.1 4520.7 4485.8 4181.8 3835.2 3408.4 4927.7 5154.7 TRUE FALSE FALSE 4994.954373 5236.199536 5178.717047 4705.073686 4154.891471 4102.039132 3983.124949 3796.398479 4724.57812 5124.039615 0.974807915 1.021888964 1.010670767 0.918235228 0.81086248 0.800547896 0.77734078 0.740899518 0.922041685 1 12.32306591 -5.827606384 2.021111914 0.992591673 0.77382045 0.915237932 0.029354929 0.044024389 0.365934756 0.003256194 0.00694509 1.49E-06 5.827606384 -0.218771223 TGS(ph)NAAQYK ddPTM_HeLa_CUDC101_4h_R1 1 TGSNAAQYK 9 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 T(0.327)GS(0.673)NAAQY(0.001)K 95.094 0.022341 268210000 6153.8 4575.6 4537.8 4508.3 3530.9 4016.6 3578.9 2895.8 3781.4 4364.6 TRUE FALSE FALSE 5432.460893 4716.568813 4783.127194 4692.167961 3270.432542 3939.990047 3716.939372 3225.446167 3625.529091 4338.639165 1.252111707 1.087107877 1.10244872 1.081483798 0.753792242 0.908116554 0.856706269 0.743423466 0.835637386 1 12.08302689 -5.826570121 6.158656112 1.116524147 0.825465473 0.483848754 0.115027704 0.093804769 6.605814444 0.015074595 0.027718034 1.49E-06 5.826570121 -0.291058674 GTQSIPNDS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 3 GTQSIPNDSPAR 12 0 Q9NQ92;H9KV77;J3QRX6 Q9NQ92 COPRS Coordinator of PRMT5 and differentiation stimulator 1 0 GTQSIPNDS(1)PAR;GTQSIPNDS(1)PAR;GTQSIPNDS(1)PAR ;; 214.58 9.05E-24 243078100 12107.8 9745.1 9507.4 9420.5 9209.3 9404.2 8532.9 7552.8 10315 9252.5 TRUE FALSE FALSE 10688.54204 10045.33498 10021.3988 9804.708709 8529.948287 9224.830553 8862.016811 8412.580223 9889.811334 9197.465719 1.162118171 1.092185096 1.089582621 1.06602286 0.927423765 1.002975258 0.963528116 0.914662852 1.075275694 1 13.16702068 -5.822042255 6.309529268 1.080484472 0.956732916 0.684436656 0.042814559 0.137255789 10.6591052 0.009417933 0.017310914 1.51E-06 5.822042255 -0.123751556 LVPIKPAPLPLS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 1 LVPIKPAPLPLSPGK 15 1 A0A1B0GVH1;Q9BRW5;Q02086-2;Q02086 A0A1B0GVH1 SP2 Transcription factor Sp2 1 0 LVPIKPAPLPLS(1)PGK 110.25 0.0014069 8747400 4570.5 3417.2 3070.3 3125.1 2663.7 2837.4 2463 1592.1 3361.7 4684 TRUE FALSE FALSE 4034.752918 3522.479882 3236.289705 3252.555086 2467.204158 2783.281322 2557.998735 1773.338229 3223.129303 4656.13936 0.866544707 0.756523723 0.6950586 0.698551919 0.52988194 0.597765897 0.54938191 0.380860213 0.692232138 1 12.18491852 -5.821347443 0.265608656 1.037242978 0.249606153 0.601631559 0.105521304 0.57331505 0.06649836 0.036738181 0.148518798 1.51E-06 5.821347443 -0.787636825 LEGGRQDS(ph)EDEEER ddPTM_HeLa_CUDC101_4h_R1 1 LEGGRQDSEDEEER 14 1 A0A3B3ISZ4;Q9BYE7-3;Q9BYE7 A0A3B3ISZ4 PCGF6 Polycomb group RING finger protein 6 1 0 LEGGRQDS(1)EDEEER 135.61 0.0033061 17673000 1641.2 1658.5 1732.9 1472.5 1623 1478.1 1415.9 1205.5 1688.4 1806.1 TRUE FALSE FALSE 1448.821024 1709.596419 1826.585816 1532.554915 1503.274523 1449.907705 1470.511737 1342.729247 1618.803437 1795.357237 0.806982028 0.952231892 1.017394075 0.853621153 0.837312203 0.807587301 0.819063586 0.747889734 0.901660909 1 10.81005522 -5.819841684 2.477318571 0.918020817 0.799428649 0.514963465 0.059466414 0.273594043 3.422891547 0.012393265 0.02538596 1.51E-06 5.819841684 -0.118592168 RPAS(ph)PS(ph)SPEHLPATPAESPAQR ddPTM_HeLa_CUDC101_4h_R1 2 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 2 0 RPAS(0.828)PS(0.586)S(0.584)PEHLPAT(0.002)PAESPAQR;RPAS(0.869)PS(0.595)S(0.537)PEHLPATPAESPAQR ; 59.628 0.0078659 186804000 1771.91 1533.35 1481.09 1596.25 2204 1952.53 1573.21 1817.72 1866.72 1788.45 TRUE FALSE FALSE 1564.209396 1580.590696 1561.162205 1661.351975 2041.415311 1915.288743 1633.889237 2024.641897 1789.773011 1777.81222 0.879850739 0.889065042 0.878136728 0.934492381 1.148273866 1.077329046 0.91904489 1.138839004 1.006727815 1 10.79588723 -5.817719342 13.57786206 0.931431132 1.060472891 0.471732603 0.071980853 0.965773979 232.1008923 0.011177189 0.020265439 1.52E-06 5.817719342 0.129041758 RGS(ph)DASDFDLLETQSACSDTSESSAAGGQGNSR ddPTM_HeLa_CUDC101_4h_R1 1 RGSDASDFDLLETQSACSDTSESSAAGGQGNSR 33 1 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;H0Y390;Q9UPN3-5;H0Y314;H3BPE1;H3BQK9;H0Y6T5;H0Y4F5 A0A590UJG2;H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 RGS(0.343)DAS(0.084)DFDLLET(0.055)QS(0.235)ACS(0.033)DT(0.139)S(0.06)ES(0.036)S(0.016)AAGGQGNSR 71.024 3.32E-06 9334400 289.96 432.71 494.29 390.03 439.99 642.64 481.23 500.73 472.81 458.94 TRUE FALSE FALSE 255.9713284 446.0412822 521.0128125 405.9371093 407.5328143 630.3827127 499.7912023 557.7310792 453.3205717 456.2102045 0.561081988 0.977710007 1.142045503 0.889802782 0.893300523 1.381781263 1.095528328 1.222530916 0.993666006 1 8.833554907 -5.817497269 0.799776452 0.80859297 1.226969673 0.270623615 0.17890252 0.592034706 0.696979913 0.039289535 0.137525871 1.52E-06 5.817497269 0.418376702 APVQPQQS(ph)PAAAPGGTDEKPSGK ddPTM_HeLa_CUDC101_4h_R1 3 APVQPQQSPAAAPGGTDEKPSGK 23 1 Q13200;C9JPC0;F8WBS8 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 0 APVQPQQS(1)PAAAPGGTDEKPSGK;APVQPQQS(1)PAAAPGGTDEKPSGK;APVQPQQS(1)PAAAPGGTDEKPSGK ;; 136.74 9.25E-08 348753000 16585.4 13594 14308.7 14068 13735.4 12590 13256.7 13028.3 14498.7 15034.7 TRUE FALSE FALSE 14641.28455 14012.81503 15082.2716 14641.75385 12722.16691 12349.86673 13768.01536 14511.38901 13901.05745 14945.27294 0.979659898 0.937608506 1.009166689 0.979691298 0.851250222 0.826339323 0.921228767 0.970968484 0.930130718 1 13.86740162 -5.815429659 8.743113065 0.98677664 0.889865898 0.422476966 0.044141536 0.162335356 24.28207564 0.006119388 0.011136031 1.53E-06 5.815429659 -0.096910741 PLECWSLHR ddPTM_HeLa_CUDC101_4h_R1 1 PLECWSLHR 9 0 Q96MC9 Q96MC9 C1orf147 Uncharacterized protein C1orf147 0 0 84.615 0.033533 9712200 2695.1 2279.7 2597.2 2434.8 2703.2 2564.9 2446.1 2454.8 2709.4 3428.3 FALSE FALSE TRUE 2379.184464 2349.934855 2737.612488 2534.101668 2503.790322 2515.978806 2540.446896 2734.244509 2597.717385 3407.908319 0.698136288 0.689553425 0.80331166 0.743594437 0.734700023 0.738276553 0.74545635 0.802323376 0.762261523 1 11.73467081 -9.286229279 0.919174866 1.006514377 0.741779356 0.086565282 0.08011767 0.161718886 0.235569011 0.029493451 0.007228339 5.17E-10 9.286229279 -0.264735021 PLISVYSEK ddPTM_HeLa_CUDC101_4h_R1 1 PLISVYSEK 9 0 P36578;H3BTP7;H3BU31 P36578 RPL4 60S ribosomal protein L4 0 0 128.69 0.025691 377360 347.09 206.77 122.16 176.18 161.7 167.99 78.741 218.96 0 0 FALSE FALSE TRUE 306.4046364 213.1403386 128.7643391 183.3653819 149.7717132 164.7858706 81.77806675 243.8855213 0 0 0 PLISVYSEK(ac)GESSGK ddPTM_HeLa_CUDC101_4h_R1 1 PLISVYSEKGESSGK 15 1 P36578;H3BTP7;H3BU31 P36578 RPL4 60S ribosomal protein L4 0 1 PLISVYSEK(1)GESSGK 217.88 4.37E-21 271490 83.589 0 0 0 72.324 0 72.879 0 0 153.8 FALSE TRUE FALSE 73.79082413 0 0 0 66.98880261 0 75.68996744 0 0 152.8851908 0.482655146 0 0 0 0.438164104 0 0.495077169 0 0 1 7.256304856 -8.109070616 0.837617777 0.924652419 0.145695246 0 0.350242181 0.196900251 0.297815037 0.066448262 0.04620037 7.78E-09 8.109070616 -0.778957174 SFELPPYTPPPILS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 2 SFELPPYTPPPILSPVR 17 0 A0A1C7CYX1;Q6PJG2;A0A0A0MSU2 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 SFELPPY(0.001)T(0.004)PPPILS(0.995)PVR;SFELPPYT(0.004)PPPILS(0.996)PVR ; 126.42 9.11E-05 21133000 2900.95 2703.06 2848.74 3151.26 3859.4 4709.6 3848.2 2218.26 2782.71 3599 TRUE FALSE FALSE 2560.905039 2786.338075 3002.751501 3279.782004 3574.699751 4619.772227 3996.626363 2470.777752 2668.005516 3577.592988 0.715817883 0.778830371 0.83932172 0.916756606 0.99919129 1.29130738 1.117127179 0.690625725 0.745754345 1 11.80477355 -5.815123504 3.017447615 0.853696953 1.053840154 0.257646748 0.1587318 0.303073494 5.621627615 0.025967728 0.051627764 1.53E-06 5.815123504 0.200143202 AIS(ph)SDMFFGR ddPTM_HeLa_CUDC101_4h_R1 3 AISSDMFFGR 10 0 Q8N6H7;E9PMU9;H0YDN9;A0A0D9SF70;G5E9L0;Q8N6H7-3;Q8N6H7-2 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 0 AIS(0.948)S(0.052)DMFFGR;AIS(0.5)S(0.5)DMFFGR;AIS(0.953)S(0.047)DMFFGR ;; 141.71 0.0010958 40095500 3353.7 3245.3 3116.12 3463.2 5813 6026.3 5091.3 3170.17 3306.58 3830.9 TRUE FALSE FALSE 2960.58437 3345.283846 3284.586873 3604.444265 5384.186571 5911.358368 5287.673146 3531.049339 3170.281373 3808.113636 0.777441183 0.87846219 0.862523335 0.946516992 1.413872349 1.552306189 1.388528193 0.92724369 0.83250703 1 11.89486081 -5.814910625 5.905254089 0.889960582 1.341776716 0.643402527 0.159467702 0.095394503 7.103493095 0.024730967 0.045724697 1.53E-06 5.814910625 0.451816134 S(ph)PRPDHPGTPPHK ddPTM_HeLa_CUDC101_4h_R1 1 SPRPDHPGTPPHK 13 1 P30291 P30291 WEE1 Wee1-like protein kinase 1 0 S(1)PRPDHPGTPPHK 74.141 0.020097 5002100 3582.9 3127.2 3312.3 2966.6 2880.6 2349.5 2543.8 2598.1 3126.9 3325 TRUE FALSE FALSE 3162.917893 3223.545325 3491.372957 3087.590771 2668.103877 2304.687202 2641.915218 2893.857202 2998.007859 3305.222752 0.956945456 0.975288375 1.056320018 0.934155124 0.807238748 0.697286499 0.799315331 0.875540748 0.907051683 1 11.69053179 -5.814433416 3.599523087 0.984259617 0.785875825 0.726922195 0.053544295 0.076471054 2.023321754 0.00718185 0.013951584 1.53E-06 5.814433416 -0.198383792 TSLAEDSCLGRHS(ph)PVPR ddPTM_HeLa_CUDC101_4h_R1 1 TSLAEDSCLGRHSPVPR 17 1 Q13469-3;Q13469-4;Q13469-2;Q13469;Q13469-5 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 0 T(0.001)S(0.001)LAEDS(0.033)CLGRHS(0.966)PVPR 55.66 0.028947 10384000 1839.4 1369.9 1246.5 1308.1 2158.5 1823.8 1411.9 1399.9 1989.2 1272 TRUE FALSE FALSE 1623.78832 1412.104995 1313.88956 1361.449972 1999.271755 1789.014054 1466.357456 1559.258957 1907.204334 1264.434087 1.284201633 1.116788142 1.039112733 1.076726724 1.581159331 1.414873319 1.159694658 1.233167449 1.508346187 1 10.30427612 -5.814319119 24.99999725 1.124362661 1.338664093 0.16715691 0.174878209 87.06510217 41161.5046 0.022552119 0.040879218 1.53E-06 5.814319119 0.214301432 HSPAPPPDPGFPAPS(ph)PPPADSPSEGFSLK ddPTM_HeLa_CUDC101_4h_R1 2 HSPAPPPDPGFPAPSPPPADSPSEGFSLK 29 0 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 0 HSPAPPPDPGFPAPS(1)PPPADSPSEGFSLK;HSPAPPPDPGFPAPS(1)PPPADSPSEGFSLK ; 104.89 7.87E-10 21341000 2609.3 2358.4 2450.17 2420.6 3001.3 2719.1 2593.6 2211.55 2401.01 2783.6 TRUE FALSE FALSE 2303.441809 2431.059509 2582.633602 2519.322531 2779.900078 2667.237698 2693.636021 2463.303913 2302.039352 2767.043023 0.832456088 0.878576693 0.933355058 0.910474651 1.004646496 0.963930693 0.973470957 0.890229712 0.831949244 1 11.43412936 -5.813933533 24.9927257 0.915903315 0.959588595 0.184179137 0.054647729 193.8591217 92296.57546 0.010110868 0.01832752 1.53E-06 5.813933533 0.04368528 DKAPVQPQQS(ph)PAAAPGGTDEKPSGK ddPTM_HeLa_CUDC101_4h_R1 4 DKAPVQPQQSPAAAPGGTDEKPSGK 25 2 Q13200;C9JPC0;F8WBS8 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 0 DKAPVQPQQS(1)PAAAPGGTDEKPSGK;DKAPVQPQQS(1)PAAAPGGTDEKPSGK;DKAPVQPQQS(1)PAAAPGGTDEKPSGK;DKAPVQPQQS(1)PAAAPGGTDEKPSGK ;;; 119.91 3.51E-10 670830000 29449.5 25398.8 26953.6 25871.8 26359.5 25045.6 24549.8 25448.7 25846.6 27759.8 TRUE FALSE FALSE 25997.47425 26181.30692 28410.79315 26926.96383 24415.0122 24567.89691 25496.69401 28345.67714 24781.19221 27594.68348 0.942118951 0.948780838 1.029574888 0.975802598 0.884772323 0.890312691 0.923971244 1.027215158 0.898042271 1 14.75210272 -5.813765418 24.95675799 0.974978622 0.928078391 0.083830228 0.049436239 119.3501286 56923.26924 0.006736101 0.012210231 1.54E-06 5.813765418 -0.04690023 NELQEPCDS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 NELQEPCDSPK 11 0 O94913 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 NELQEPCDS(1)PK;NELQEPCDS(1)PK ; 144.68 0.001121 78889000 7205.1 6634 7151.4 6244.7 5960.3 5931.1 5429 4702.6 7649.6 6868.9 TRUE FALSE FALSE 6360.5291 6838.385677 7538.026316 6499.385858 5520.620544 5817.974149 5638.398349 5237.924975 7334.28025 6828.043477 0.931530258 1.001514665 1.103980421 0.951866502 0.808521586 0.85207046 0.825770716 0.767119453 1.074140824 1 12.73725653 -5.81376197 4.97355039 0.980973325 0.816589626 0.739709222 0.055826945 0.086483648 4.516251999 0.007933462 0.01487683 1.54E-06 5.81376197 -0.164383699 STS(ph)TPTS(ph)PGPR ddPTM_HeLa_CUDC101_4h_R1 1 STSTPTSPGPR 11 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BRB0;A0A0C4DGL7;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 2 0 S(0.004)T(0.006)S(0.968)T(0.026)PT(0.036)S(0.96)PGPR 128.88 0.022344 111990000 7445.4 6559.6 6286.3 6445.3 6510.9 6401.7 6328.5 5848.2 5961.4 6440.9 TRUE FALSE FALSE 6572.661498 6761.693501 6626.156393 6708.167193 6030.603879 6279.598238 6572.592365 6513.935449 5715.668569 6402.58924 1.026563044 1.05608735 1.034918241 1.047727246 0.941900792 0.980790428 1.026552246 1.017390809 0.89271205 1 12.64443974 -5.811372991 24.99999041 1.02052787 0.993373362 0.002505303 0.048468058 150.555393 75377.28467 0.004418658 0.008009509 1.54E-06 5.811372991 -0.027154509 PMFIVNTNVPR ddPTM_HeLa_CUDC101_4h_R1 1 PMFIVNTNVPR 11 0 P14174 P14174 MIF Macrophage migration inhibitory factor 0 0 139.38 5.49E-05 0 1186.5 1576.4 1273.2 962.43 1491.3 1219.7 1214.5 893.12 947.59 808.29 FALSE FALSE TRUE 1047.420269 1624.967016 1342.033043 1001.682055 1381.28977 1196.436255 1261.343672 994.7891707 908.5299391 803.4822551 1.303600997 2.022405604 1.670270917 1.246676014 1.719129155 1.489063694 1.569846333 1.23809725 1.130740515 1 9.650122352 -7.816622485 1.828079807 1.094700877 1.558684088 0.422846136 0.224772477 0.204338817 1.41946038 0.047715059 0.045489692 1.53E-08 7.816622485 0.463983212 DSGNWDTSGSELS(ph)EGELEKR ddPTM_HeLa_CUDC101_4h_R1 1 DSGNWDTSGSELSEGELEKR 20 1 O75400-2;O75400-3;O75400 O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 DSGNWDTSGS(0.03)ELS(0.97)EGELEKR 103.04 0.00025748 31080000 1114.5 999.3 1090.6 907.39 747.93 737.13 631.29 626.99 744.76 999.01 TRUE FALSE FALSE 983.8599995 1030.087249 1149.561135 944.3972863 692.756694 723.0704734 655.6390668 698.3640072 714.0606776 993.0678441 0.99072788 1.03727782 1.157585699 0.950989695 0.697592514 0.7281179 0.660215786 0.703238969 0.719045211 1 9.955748472 -5.81108925 4.286107116 1.01182505 0.694790789 0.620318548 0.10545158 0.047759419 1.833578832 0.007910614 0.015078394 1.54E-06 5.81108925 -0.317034261 VS(ph)GSPEQAVEENLSSYSLDRR ddPTM_HeLa_CUDC101_4h_R1 1 VSGSPEQAVEENLSSYSLDRR 21 1 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 VS(0.58)GS(0.42)PEQAVEENLSSYSLDRR 64.962 0.005659 27667000 1754.7 1472.6 1470.6 1326.1 2156.4 1623.6 1661.1 1346.6 2106 1568.8 TRUE FALSE FALSE 1549.016726 1517.969061 1550.105084 1380.18409 1997.326668 1592.632535 1725.169183 1499.891501 2019.189789 1559.468708 0.993297729 0.973388599 0.993995632 0.885034809 1.280773803 1.021266106 1.106254441 0.961796472 1.294793399 1 10.60683889 -5.810826424 24.9999999 0.987583429 1.088418444 0.022102728 0.127743992 104.4861546 52891.11359 0.011150618 0.020212238 1.55E-06 5.810826424 0.100835015 SAEIDS(ph)DDTGGSAAQK ddPTM_HeLa_CUDC101_4h_R1 1 SAEIDSDDTGGSAAQK 16 0 P33176 P33176 KIF5B Kinesin-1 heavy chain 1 0 SAEIDS(0.748)DDT(0.251)GGS(0.001)AAQK 107.13 0.0021323 4983900 1851.6 1636.8 1449.3 1589.1 1306.7 1567.6 1455.6 1209.4 1588.4 1692.5 TRUE FALSE FALSE 1634.558255 1687.227868 1527.653542 1653.910367 1210.307344 1537.700642 1511.74298 1347.073207 1522.92548 1682.432935 0.971544375 1.00285 0.908002637 0.983046832 0.719379251 0.913974406 0.89854576 0.80066978 0.905192384 1 10.71633328 -5.810658522 24.99829136 0.980840723 0.843587617 0.499170363 0.061004264 54.36690471 27612.65336 0.007854639 0.014237763 1.55E-06 5.810658522 -0.137253106 TAS(ph)NPKVENEDEPVR ddPTM_HeLa_CUDC101_4h_R1 3 TASNPKVENEDEPVR 15 1 Q9UBF8-2 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 1 0 T(0.026)AS(0.974)NPKVENEDEPVR;T(0.092)AS(0.908)NPKVENEDEPVR;T(0.06)AS(0.94)NPKVENEDEPVR ;; 142.4 0.00193 228771000 10292.9 8967.9 8466.6 9259.5 10619.1 10721.4 9321.7 9188.9 9591.6 9629.7 TRUE FALSE FALSE 9086.381865 9244.190369 8924.330006 9637.142433 9835.750149 10516.90716 9681.241092 10234.92723 9196.230188 9572.422116 0.949224946 0.96571069 0.932295912 1.006761122 1.027509029 1.0986673 1.011367967 1.069209768 0.960700445 1 13.2246683 -5.810006058 2.620719484 0.971560864 1.054899388 0.699216919 0.027582115 0.136785089 1.916289006 0.004495814 0.009158732 1.55E-06 5.810006058 0.083338524 IT(ph)T(ph)T(ph)STYISASTLKVNK ddPTM_HeLa_CUDC101_4h_R1 1 ITTTSTYISASTLKVNK 17 1 A0A3B3IRI4;A0A3B3IU93;A0A3B3ITI0;A0A3B3ISI1;Q8WYB5-2;Q8WYB5 A0A3B3IRI4 KAT6B Histone acetyltransferase KAT6B 3 0 IT(0.906)T(0.687)T(0.687)S(0.348)T(0.349)Y(0.012)IS(0.006)AS(0.002)T(0.002)LKVNK 59.248 0.0030257 0 1136.2 933.97 1026.1 968.67 1846.3 1414.9 1142.6 1162.1 1321.4 1069.6 TRUE FALSE FALSE 1003.016358 962.7445087 1081.57407 1008.17655 1710.102127 1387.91314 1186.670465 1294.388767 1266.931333 1063.237972 0.943360174 0.905483565 1.017245526 0.948213454 1.608390758 1.305364534 1.116091126 1.21740269 1.191578336 1 10.05424882 -5.809829516 24.99999646 0.969083954 1.297372442 0.53695877 0.139275262 52.79308945 27274.54346 0.017679451 0.032046783 1.55E-06 5.809829516 0.328288488 YLSFT(ph)PPEK ddPTM_HeLa_CUDC101_4h_R1 1 YLSFTPPEK 9 0 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 YLS(0.482)FT(0.518)PPEK 140.16 0.0088903 317530000 6235.2 4774.8 5242.6 4977.3 4009.7 5084.2 4762.3 3225.3 3813.6 4752.3 TRUE FALSE FALSE 5504.319308 4921.905928 5526.030814 5180.295808 3713.912419 4987.227356 4945.983506 3592.455115 3656.401794 4724.033108 1.165173736 1.041886417 1.169769705 1.096583298 0.786174088 1.055713887 1.046983244 0.760463577 0.774000036 1 12.20580336 -5.80928859 24.99053482 1.085614711 0.932192561 0.117385336 0.141111473 101.5637649 53044.07696 0.015636347 0.028343336 1.55E-06 5.80928859 -0.15342215 LYEALT(ph)PVH ddPTM_HeLa_CUDC101_4h_R1 2 LYEALTPVH 9 0 G5E9W3;Q9UKF6 G5E9W3 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 1 0 LYEALT(1)PVH;LYEALT(1)PVH ; 134.26 0.012709 25132700 8113.7 7593.9 6854 6690.6 8318.6 7296.8 6586.2 6737.3 7193.8 7575.5 TRUE FALSE FALSE 7162.624386 7827.859058 7224.547972 6963.471587 7704.953451 7157.625697 6840.23194 7504.246999 6897.268519 7530.440589 0.951156085 1.039495494 0.959379187 0.924709717 1.023174323 0.950492287 0.908344188 0.996521639 0.915918323 1 12.87851856 -5.809266636 0.004776107 1.929008873 2.76E-05 0 0.045135508 24945.60611 35.84528231 7114.544753 7363.062585 1.55E-06 5.809266636 -1.928981246 MT(ph)LTDSIERCLKKGK ddPTM_HeLa_CUDC101_4h_R1 1 MTLTDSIERCLKKGK 15 3 E9PMY4;C9JNM6;O00458-2;O00458 E9PMY4 IFRD1 Interferon-related developmental regulator 1 1 0 MT(0.498)LT(0.498)DS(0.004)IERCLKKGK 45.213 0.040659 21975000 592.46 580.08 389.19 513.45 873.61 633.47 619.51 598.3 430.18 685.51 TRUE FALSE FALSE 523.0127369 597.9515772 410.2307886 534.3907103 809.1655308 621.3876152 643.4047082 666.4080536 412.4477983 681.432556 0.767519445 0.877491942 0.602012312 0.784216583 1.187447714 0.91188425 0.94419426 0.977951593 0.605265766 1 9.412427065 -5.808774066 24.99997579 0.85595869 0.994324843 0.296521126 0.144357231 155.4119714 82080.86237 0.021099508 0.038246187 1.55E-06 5.808774066 0.138366154 LTRPAAS(ph)PAVGEK ddPTM_HeLa_CUDC101_4h_R1 1 LTRPAASPAVGEK 13 1 F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8;Q8N2M8-4 F5H0Q6 CLASRP CLK4-associating serine/arginine rich protein 1 0 LT(0.047)RPAAS(0.953)PAVGEK 110.56 0.022466 48627000 3002.1 2767.4 2836.6 2624.3 2658.1 2664.7 2495.1 2281.5 2260.5 2763.5 TRUE FALSE FALSE 2650.198389 2852.660314 2989.955176 2731.330297 2462.017259 2613.875287 2591.336843 2541.216738 2167.321233 2747.062579 0.964738994 1.038440236 1.088419026 0.994273053 0.896236321 0.95151647 0.943311908 0.925066927 0.788959542 1 11.42367406 -5.808527138 12.44323535 0.997003113 0.931670391 0.067679999 0.074994602 0.773942825 203.4337101 0.006136897 0.011132535 1.55E-06 5.808527138 -0.065332721 LQLERPVS(ph)PETQADLQR ddPTM_HeLa_CUDC101_4h_R1 2 LQLERPVSPETQADLQR 17 1 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 LQLERPVS(0.708)PET(0.292)QADLQR;LQLERPVS(0.598)PET(0.402)QADLQR ; 142.4 0.00093861 31851200 1977.94 1758.88 1821.02 1421.05 1309.41 1058.83 866.06 854.53 1595.2 2001.89 TRUE FALSE FALSE 1746.088872 1813.069008 1919.469849 1479.006561 1212.817433 1038.634582 899.4642243 951.8062411 1529.445181 1989.982669 0.877439235 0.911097888 0.964566114 0.74322585 0.609461304 0.521931471 0.451996009 0.478298759 0.768572111 1 10.95854015 -5.806688085 1.337143741 0.94254739 0.468665634 0.883363302 0.066794229 0.069056303 0.246646209 0.008283478 0.020884245 1.56E-06 5.806688085 -0.473881756 SESGTDLREHS(ph)PSESEKEVVGADPR ddPTM_HeLa_CUDC101_4h_R1 1 SESGTDLREHSPSESEKEVVGADPR 25 2 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 SES(0.001)GT(0.006)DLREHS(0.698)PS(0.221)ES(0.074)EKEVVGADPR 47.288 0.020274 31083000 4681.5 4512.7 4481.1 5062.5 8307.8 5923.6 6215.5 7295.1 5484.7 6403.4 TRUE FALSE FALSE 4132.741667 4651.730938 4723.361821 5268.970632 7694.950145 5810.617199 6455.233917 8125.544696 5258.618345 6365.312292 0.649259844 0.730793828 0.742047146 0.827763099 1.208888078 0.912856578 1.014126821 1.276535121 0.82613674 1 12.63601558 -5.806145882 11.34705704 0.813698673 1.083087042 0.580454807 0.12691992 0.506893686 127.2411311 0.024056651 0.043672389 1.56E-06 5.806145882 0.269388369 PQYQTWEEFSR ddPTM_HeLa_CUDC101_4h_R1 1 PQYQTWEEFSR 11 0 Q6P2S0;Q659G3;E9PE20;P49458-2;P49458 Q6P2S0 SRP9;DKFZp564M2223 Signal recognition particle 9 kDa protein 0 0 147.28 0.0050034 20578000 680.22 677.84 638.66 822.79 691.72 521.09 661.37 421.8 654.68 719.35 FALSE FALSE TRUE 600.4856427 698.723447 673.1878914 856.3469326 640.6931937 511.1510764 686.8792624 469.816007 627.6938133 715.0712742 0.839756349 0.977138185 0.941427681 1.197568639 0.895985081 0.714825354 0.960574543 0.65701983 0.877805942 1 9.481943238 -5.512244926 24.94005626 0.949522741 0.797386991 0.346532778 0.116294611 531.1042676 1245625.433 0.017149509 0.036189866 3.07E-06 5.512244926 -0.15213575 KAS(ph)PEPPDSAEGALK ddPTM_HeLa_CUDC101_4h_R1 6 KASPEPPDSAEGALK 15 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 KAS(0.999)PEPPDS(0.001)AEGALK;KAS(0.939)PEPPDS(0.061)AEGALK;KAS(0.997)PEPPDS(0.003)AEGALK;KAS(0.986)PEPPDS(0.014)AEGALK;KAS(1)PEPPDSAEGALK;KAS(0.998)PEPPDS(0.002)AEGALK ;;;;; 191.47 4.08E-11 1528924000 36376.3 32610.5 32688.5 32098.7 32554.7 29716.2 31028.6 32106.9 33797.3 34330 TRUE FALSE FALSE 32112.32526 33615.19085 34455.73919 33407.82373 30153.20464 29149.413 32225.3835 35761.81972 32404.16099 34125.80363 0.94099836 0.98503734 1.009668213 0.978960791 0.883589584 0.854175137 0.944311344 1.047940734 0.949550122 1 15.0585754 -5.805929501 24.83079548 0.976118257 0.92775256 0.15493016 0.050799844 171.4210033 95672.82618 0.007867188 0.014260547 1.56E-06 5.805929501 -0.048365698 SWS(ph)LATFR ddPTM_HeLa_CUDC101_4h_R1 2 SWSLATFR 8 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 S(0.002)WS(0.998)LATFR;S(0.002)WS(0.991)LAT(0.007)FR ; 110.53 0.011355 16208300 2153.66 2153 2412.9 2348.4 4502.7 3169.8 3007.6 2873 3047.1 3468.9 TRUE FALSE FALSE 1901.21124 2219.331378 2543.348673 2444.177903 4170.544792 3109.341346 3123.604139 3200.050707 2921.497248 3448.266829 0.551352704 0.643607786 0.737573047 0.708813449 1.209461158 0.901711353 0.905847574 0.928017136 0.847236422 1 11.7516557 -5.805784344 24.99997113 0.761989781 0.974477794 0.410408748 0.138961573 150.7686746 84997.08631 0.028251414 0.051210238 1.56E-06 5.805784344 0.212488012 S(ph)PPADAIPK ddPTM_HeLa_CUDC101_4h_R1 3 SPPADAIPK 9 0 P18754-2;M0R1Q8;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;C9JW69;P18754 P18754-2 RCC1 Regulator of chromosome condensation 1 0 S(1)PPADAIPK;S(1)PPADAIPK;S(1)PPADAIPK ;; 97.813 0.019792 582860000 15382.8 12195.5 12344.5 12084.4 11061.7 11547 11038 11017.7 11877.4 11067 TRUE FALSE FALSE 13579.6515 12571.2289 13011.88101 12577.25407 10245.70043 11326.76021 11463.73936 12271.91043 11387.80854 11001.17299 1.234382144 1.142717137 1.182772148 1.14326482 0.931327999 1.029595682 1.042047004 1.115509268 1.035144939 1 13.42536974 -5.805667271 24.99997072 1.123971493 1.030505425 0.269269703 0.075383454 177.8161393 100510.6427 0.014592881 0.026451954 1.56E-06 5.805667271 -0.093466068 PGPTPSGTNVGSSGRS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 6 PGPTPSGTNVGSSGRSPSK 19 1 P60468 P60468 SEC61B Protein transport protein Sec61 subunit beta 1 0 PGPTPSGTNVGSS(0.018)GRS(0.959)PS(0.023)K;PGPTPSGTNVGS(0.009)S(0.087)GRS(0.901)PS(0.003)K;PGPTPSGTNVGS(0.006)S(0.097)GRS(0.879)PS(0.018)K;PGPTPSGTNVGS(0.004)S(0.111)GRS(0.884)PS(0.002)K;PGPTPSGTNVGS(0.009)S(0.015)GRS(0.948)PS(0.028)K;PGPTPSGTNVGS(0.014)S(0.241)GRS(0.737)PS(0.008)K ;;;;; 153.25 1.82E-05 633795800 24036.9 23011.6 17982.3 19780.2 14407.2 12388.8 13611.32 13054.69 15374.9 22352.3 TRUE FALSE FALSE 21219.33102 23720.56012 18954.47753 20586.92205 13344.40956 12152.50428 14136.31317 14540.78314 14741.14011 22219.34753 0.954993435 1.067563307 0.853061842 0.92653135 0.600576122 0.546933445 0.636216395 0.654419898 0.663437128 1 14.43952883 -5.805440693 4.048622847 0.974450197 0.604270341 0.602680624 0.113458619 0.045250254 1.561062849 0.008508869 0.016366666 1.57E-06 5.805440693 -0.370179856 GSGGGGGGGGQGST(ph)NYGK ddPTM_HeLa_CUDC101_4h_R1 1 GSGGGGGGGGQGSTNYGK 18 0 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 0 GSGGGGGGGGQGS(0.289)T(0.688)NY(0.023)GK 108.97 0.00046668 0 591.56 499.88 555.73 569.57 339.97 517.54 483.71 370.9 540.66 623.26 TRUE FALSE FALSE 522.2182335 515.2807103 585.7744448 592.7995265 314.8910904 507.6687868 502.3668567 413.1217568 518.373766 619.5528218 0.842895416 0.831697786 0.945479424 0.956818379 0.508255437 0.819411629 0.810853956 0.666806352 0.836690186 1 9.275083479 -5.805346304 24.99992703 0.919818435 0.717588255 0.498607888 0.097218827 84.7389641 48248.81906 0.014885257 0.026981929 1.57E-06 5.805346304 -0.20223018 T(ph)SDSDQQAYLVQR ddPTM_HeLa_CUDC101_4h_R1 1 TSDSDQQAYLVQR 13 0 Q96CV9-3;Q96CV9-2;Q96CV9 Q96CV9-3 OPTN Optineurin 1 0 T(0.968)S(0.032)DSDQQAYLVQR 170.26 2.35E-06 7852700 1453.4 1178.1 1449.3 1498.8 2081.8 1908.1 1815.2 1838.9 1746.2 1756.8 TRUE FALSE FALSE 1283.034655 1214.395865 1527.653542 1559.927542 1928.229762 1871.706172 1885.212872 2048.232943 1674.220897 1746.350475 0.734694824 0.695390691 0.874769162 0.893249989 1.104148216 1.071781523 1.079515766 1.172864767 0.958696963 1 10.77012741 -5.805325252 3.916591714 0.856233188 1.104837506 0.652819098 0.088765088 0.141630101 4.544659702 0.017544327 0.033877545 1.57E-06 5.805325252 0.248604318 HLTVEELFGT(ph)SLPK ddPTM_HeLa_CUDC101_4h_R1 1 HLTVEELFGTSLPK 14 0 Q9NPI6;Q9NPI6-2;A0A087WT55 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 1 0 HLTVEELFGT(0.915)S(0.085)LPK 103.97 0.0024625 0 1222.3 1266.3 815.94 1161.2 1694.9 1743.9 1292.1 1233.3 1523 1306.8 TRUE FALSE FALSE 1079.023847 1305.313202 860.0521845 1208.558755 1569.870604 1710.638013 1341.93673 1373.693887 1460.221295 1299.027095 0.830639985 1.004839088 0.662074092 0.930356849 1.208497197 1.316860918 1.033032132 1.05747901 1.124088405 1 10.34321581 -5.804342387 7.298193624 0.903928504 1.156848261 0.398054471 0.13629332 0.135139082 18.49421841 0.018513551 0.033959373 1.57E-06 5.804342387 0.252919758 ADT(ph)PGPEDGGVK ddPTM_HeLa_CUDC101_4h_R1 1 ADTPGPEDGGVK 12 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 ADT(1)PGPEDGGVK 162.31 0.00044267 16734000 7056 6172.3 6030.2 5662.8 5568.1 5333.8 4777.7 4240 5999 6306.3 TRUE FALSE FALSE 6228.906376 6362.461247 6356.210852 5893.753461 5157.352356 5232.066652 4961.977489 4722.664461 5751.718681 6268.789847 0.993637772 1.014942501 1.013945436 0.940174037 0.822703023 0.834621479 0.791536742 0.753361426 0.91751659 1 12.61397125 -5.804332711 1.970122255 1.000093393 0.79230997 0.88084765 0.032696256 0.044667249 0.352877854 0.003075823 0.006687469 1.57E-06 5.804332711 -0.207783423 GDFS(ph)YIGNLMTK ddPTM_HeLa_CUDC101_4h_R1 2 GDFSYIGNLMTK 12 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 GDFS(1)YIGNLMTK;GDFS(1)YIGNLMTK ; 99.069 0.012398 10961800 3202.5 2535.46 3263.7 2928.8 3154.6 3881.6 3497.3 2937.8 2340.6 2858.9 TRUE FALSE FALSE 2827.107805 2613.574517 3440.145494 3048.249123 2921.891443 3807.564947 3632.192033 3272.227277 2244.119477 2841.895136 0.994796666 0.919659028 1.21051106 1.072611401 1.02814893 1.339797834 1.278087987 1.151424356 0.789655976 1 11.47263761 -5.804246679 0.807547721 0.994863703 1.258135042 0.510773697 0.111748917 0.383085923 0.459544413 0.016018239 0.056411615 1.57E-06 5.804246679 0.263271339 VLAPILPDNFST(ph)PTGSR ddPTM_HeLa_CUDC101_4h_R1 1 VLAPILPDNFSTPTGSR 17 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 VLAPILPDNFS(0.007)T(0.986)PT(0.007)GS(0.001)R 292.38 7.97E-104 82235000 2994.9 2447.1 2130.2 2289.6 2873 2203.7 2195 662.77 2868 2907.2 TRUE FALSE FALSE 2643.842362 2522.49225 2245.365056 2382.979784 2661.064514 2161.668094 2279.661885 738.2170578 2749.779826 2889.907845 0.914853519 0.872862522 0.776967701 0.824586773 0.920812931 0.748005892 0.788835495 0.255446574 0.95151125 1 11.49680777 -4.201450419 1.325765029 0.923460879 7.36E-44 0.827377026 0.082706752 0.495128504 0.67392271 0.013767916 0.637138054 6.29E-05 4.201450419 -0.923460879 down ELFQT(ph)PGHTEEAVAAGK ddPTM_HeLa_CUDC101_4h_R1 4 ELFQTPGHTEEAVAAGK 17 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(1)PGHTEEAVAAGK;ELFQT(1)PGHTEEAVAAGK;ELFQT(0.749)PGHT(0.251)EEAVAAGK;ELFQT(1)PGHTEEAVAAGK ;;; 127.58 0.0003863 58491400 16908.5 15463.3 17215.9 15376.4 15351.6 16253.8 13622.2 3938.52 14063.7 18120.7 TRUE FALSE FALSE 14926.51126 15939.70594 18146.64363 16003.51605 14219.14305 15943.78585 14147.61282 4386.865197 13483.98833 18012.91727 0.82865596 0.884904189 1.007423915 0.888446653 0.789385908 0.885130687 0.785414856 0.243539963 0.748573267 1 14.13674423 -4.200508828 2.142425638 0.908991958 4.24E-11 0.841956322 0.081314127 0.216324457 0.96066594 0.011329578 0.397328612 6.30E-05 4.200508828 -0.908991958 down LLPPAS(ph)P ddPTM_HeLa_CUDC101_4h_R1 4 LLPPASP 7 0 Q9Y4R8 Q9Y4R8 TELO2 Telomere length regulation protein TEL2 homolog 1 0 LLPPAS(1)P;LLPPAS(1)P;LLPPAS(1)P;LLPPAS(1)P ;;; 113.7 0.0061297 62920900 6049.18 4722.21 4128.01 4570.55 5958.59 5481.68 4812.51 4253.23 4578.41 4553.08 TRUE FALSE FALSE 5340.10429 4867.695693 4351.182707 4756.956785 5519.036687 5377.126087 4998.130123 4737.400511 4389.686002 4525.998078 1.179873301 1.075496633 0.961375288 1.051029343 1.219407652 1.188053109 1.104315565 1.046708467 0.969882427 1 12.14402026 -5.803878223 24.99994734 1.073714472 1.140559243 0.223283844 0.076952483 238.9369859 140752.8724 0.013186676 0.023903021 1.57E-06 5.803878223 0.066844772 PSGEAFVELESEDEVK ddPTM_HeLa_CUDC101_4h_R1 2 PSGEAFVELESEDEVK 16 0 P31943;G8JLB6;E9PCY7;D6RDU3;D6RBM0;D6RIH9;D6RJ04;D6RIU0;D6RIT2;D6RFM3;D6R9T0;D6RAM1;E7EN40;D6RDL0;E7EQJ0 P31943;E7EQJ0 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 0 0 ; ; 201.6 7.55E-16 8384100 2918.5 2566.3 2513 2308.32 2682.8 2221.4 1890.54 1146.17 3366.5 3821.4 FALSE FALSE TRUE 2576.397854 2645.364661 2648.860381 2402.463267 2484.895189 2179.030496 1963.458761 1276.64536 3227.731445 3798.670143 0.678236793 0.696392306 0.697312555 0.632448509 0.654148714 0.573629827 0.516880563 0.33607692 0.849700375 1 11.89127873 -13.52287875 0.066832188 2.545861806 1.38E-17 0.822508041 0.071518551 55.88264473 0.291139898 13.68287942 2.14398563 3.00E-14 13.52287875 -2.545861806 ERPVQS(ph)LKTS(ph)RDTSPSSGSAVSSSK ddPTM_HeLa_CUDC101_4h_R1 1 ERPVQSLKTSRDTSPSSGSAVSSSK 25 3 Q8NEY8;F8W6A0;F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;F8WF16;B7Z8L1;Q8NEY8-5;Q8NEY8-6;Q8NEY8-7 Q8NEY8 PPHLN1 Periphilin-1 2 0 ERPVQS(0.56)LKT(0.484)S(0.64)RDT(0.23)S(0.062)PS(0.009)S(0.009)GS(0.004)AVS(0.001)S(0.001)SK 45.126 0.0404 29572000 1799.6 2027.9 2514.7 1962.9 3317.4 2255.2 1925.2 3046.6 2546.2 2788.7 TRUE FALSE FALSE 1588.653616 2090.377195 2650.652289 2042.955546 3072.682011 2212.185817 1999.455609 3393.412629 2441.244558 2772.112688 0.573084068 0.754073672 0.956184898 0.736966991 1.108426084 0.798014391 0.721275011 1.224125067 0.880644055 1 11.43677019 -5.80308171 24.99446071 0.799321843 0.933916247 0.130421028 0.175205809 281.0983588 168719.4288 0.030483737 0.055256841 1.57E-06 5.80308171 0.134594404 PSGPEPGFR ddPTM_HeLa_CUDC101_4h_R1 1 PSGPEPGFR 9 0 H0YAG0;C9JF58;Q8WVF1-2;Q8WVF1-3;Q8WVF1 H0YAG0 OSCP1 Protein OSCP1 0 0 13.579 0.039756 364300 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 S(ph)PGSTPTTPTSSQAPQK ddPTM_HeLa_CUDC101_4h_R1 3 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 S(0.956)PGS(0.01)T(0.034)PTTPTSSQAPQK;S(0.91)PGS(0.054)T(0.016)PT(0.016)T(0.002)PT(0.001)S(0.001)SQAPQK;S(0.943)PGS(0.016)T(0.04)PT(0.002)TPTSSQAPQK ;; 281.99 2.01E-103 274542000 13907.2 11694.6 11639.6 11096.4 11745.3 10913.4 9780 9977.8 11901.2 11666.7 TRUE FALSE FALSE 12277.0191 12054.89676 12268.87198 11548.95915 10878.87262 10705.24508 10157.21788 11113.63242 11410.6275 11597.30595 1.058609573 1.039456648 1.057907072 0.995831205 0.938051705 0.923080336 0.875825637 0.95829432 0.983903292 1 13.50150209 -5.802274876 2.460071908 1.031520061 0.916280597 0.744202881 0.028911396 0.101213338 1.249913409 0.004427507 0.009156368 1.58E-06 5.802274876 -0.115239464 ASLLHSMPT(ph)HSSPR ddPTM_HeLa_CUDC101_4h_R1 1 ASLLHSMPTHSSPR 14 0 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4X8;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 ASLLHSMPT(0.333)HS(0.333)S(0.333)PR 117.07 0.0026269 16962000 2118.4 1825.1 1446.5 1345.4 2931.5 1986 2034 1464.1 2017.6 1665.9 TRUE FALSE FALSE 1870.084363 1881.329168 1524.702165 1400.271227 2715.249085 1948.120359 2112.452061 1630.767226 1934.433674 1655.991153 1.12928403 1.136074408 0.920718787 0.84557893 1.639651927 1.176407468 1.275642118 0.984768079 1.168142517 1 10.69347925 -5.801033559 24.9999979 1.043563048 1.262964179 0.296667739 0.177356452 151.1208092 95418.15986 0.024916422 0.04516532 1.58E-06 5.801033559 0.219401131 ELPPLS(ph)PSLSR ddPTM_HeLa_CUDC101_4h_R1 2 ELPPLSPSLSR 11 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 ELPPLS(0.98)PS(0.02)LSR;ELPPLS(0.993)PS(0.007)LSR ; 166.7 2.53E-05 364400000 7686.5 6741.9 6333.9 6593.7 6301.6 5518.8 6109 7090.8 7298.6 6847.7 TRUE FALSE FALSE 6785.500122 6949.609948 6676.329793 6862.619586 5836.743523 5413.538085 6344.626176 7897.98801 6997.748619 6806.969576 0.99684596 1.020955048 0.980807938 1.008175446 0.857465787 0.795293416 0.932077939 1.160279611 1.028027016 1 12.73279695 -5.800807483 24.99876432 0.99947514 0.925908572 0.1223252 0.088555371 233.6015667 148336.4407 0.012828957 0.023254724 1.58E-06 5.800807483 -0.073566568 GSS(ph)GENNNPGSPTVSNFR ddPTM_HeLa_CUDC101_4h_R1 2 GSSGENNNPGSPTVSNFR 18 0 D6RDZ7;D6RD37;D6RAX8;D6RBL1;D6RDZ9;D6RCK9;Q99576-3;D6R8Z7 D6RDZ7 TSC22D3 1 0 GS(0.001)S(0.999)GENNNPGS(0.001)PTVSNFR;GS(0.063)S(0.937)GENNNPGSPTVSNFR ; 365.25 1.10E-246 15161600 3389.8 2760.59 2562.2 2601.3 2798.83 2080.28 1823.88 2919.9 3042.58 2782.4 TRUE FALSE FALSE 2992.452783 2845.640506 2700.720282 2707.392258 2592.365887 2040.602125 1894.227663 3252.289613 2917.163565 2765.850161 1.081928741 1.028848397 0.97645213 0.9788644 0.93727633 0.73778477 0.684862719 1.175873393 1.054707737 1 11.43350729 -5.800352615 1.896226578 1.034335098 0.850273328 0.230839742 0.124857369 0.306688056 2.242637299 0.018242216 0.04018602 1.58E-06 5.800352615 -0.18406177 NSYNNSQAPS(ph)PGLGSK ddPTM_HeLa_CUDC101_4h_R1 4 NSYNNSQAPSPGLGSK 16 0 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 NSYNNSQAPS(1)PGLGSK;NSYNNSQAPS(1)PGLGSK;NSY(0.001)NNS(0.03)QAPS(0.964)PGLGS(0.006)K;NSYNNS(0.014)QAPS(0.985)PGLGSK ;;; 276.62 4.60E-86 124131000 16586.6 15705.3 16027.6 16353.9 18367.7 17054 17939.6 16871.3 14457.9 15151.8 TRUE FALSE FALSE 14642.34389 16189.16168 16894.10054 17020.88273 17012.75136 16728.72336 18631.53638 18791.8606 13861.93924 15061.67642 0.972158974 1.074857886 1.121661365 1.130078901 1.129539029 1.110681368 1.23701611 1.247660624 0.920345044 1 13.87859474 -5.800218428 0.453326138 0.979373356 1.267005497 0.836564924 0.040804433 0.470294227 0.150482183 0.012352243 0.059218714 1.58E-06 5.800218428 0.287632141 S(ph)SPGGQDEGGFMAQGK ddPTM_HeLa_CUDC101_4h_R1 6 SSPGGQDEGGFMAQGK 16 0 F5GZ78;A0A1B0GTU4;P49023;A0A1B0GV30 F5GZ78 PXN Paxillin 1 0 S(0.604)S(0.396)PGGQDEGGFMAQGK;S(0.869)S(0.131)PGGQDEGGFMAQGK;S(0.847)S(0.153)PGGQDEGGFMAQGK;S(0.5)S(0.5)PGGQDEGGFMAQGK;S(0.5)S(0.5)PGGQDEGGFMAQGK;S(0.5)S(0.5)PGGQDEGGFMAQGK ;;;;; 324.79 7.19E-167 434988800 23099.5 19877.7 19474.5 19360.8 19537.1 18629.8 17769.4 17080.7 21456.5 20314.5 TRUE FALSE FALSE 20391.81163 20490.10838 20527.35038 20150.41711 18095.88706 18274.4676 18454.77171 19025.09785 20572.05399 20193.66845 1.009812144 1.014679845 1.016524087 0.997858173 0.896116874 0.904960268 0.913889012 0.942131832 1.018737831 1 14.3016154 -5.799593831 7.347909046 1.006295251 0.913598476 0.930053219 0.012790717 0.035662693 5.453521522 0.001838047 0.00337696 1.59E-06 5.799593831 -0.092696775 S(ph)RENLSAVMLYNPGLEFER ddPTM_HeLa_CUDC101_4h_R1 1 SRENLSAVMLYNPGLEFER 19 1 A0A1B0GTU3;Q96L93-5;Q96L93-6;Q96L93-4;Q96L93;Q96L93-2 A0A1B0GTU3 KIF16B Kinesin-like protein KIF16B 1 0 S(0.961)RENLS(0.039)AVMLYNPGLEFER 53.773 0.029474 4186800 820.13 680.62 655.02 672.28 627.69 600.41 683.23 491.62 609.62 697.99 TRUE FALSE FALSE 723.9956046 701.5890955 690.4323625 699.6984842 581.3865592 588.9581796 709.58241 547.5840336 584.4912056 693.8383244 1.04346442 1.01117086 0.99509113 1.008446002 0.837928 0.848840658 1.022691288 0.789209841 0.842402596 1 9.43845572 -5.798754826 10.30905825 1.017403335 0.883432799 0.249158273 0.079850551 0.23508452 63.48606624 0.007994078 0.014546772 1.59E-06 5.798754826 -0.133970535 AGTFIAPPVYSNITPYQSHLRS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 1 AGTFIAPPVYSNITPYQSHLRSPVR 25 1 A0A1C7CYX1;Q6PJG2;A0A0A0MSU2 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 AGTFIAPPVY(0.002)S(0.005)NIT(0.002)PY(0.03)QS(0.216)HLRS(0.744)PVR 65.744 0.0012149 40458000 1733.3 2022.4 1719.8 2041.5 2894 3277.1 2713.2 2887.4 1461.3 1847 TRUE FALSE FALSE 1530.125202 2084.707747 1812.77759 2124.761194 2680.515386 3214.594778 2817.849033 3216.089945 1401.064595 1836.013962 0.833395188 1.135453101 0.98734412 1.157268538 1.459964598 1.750855301 1.534764491 1.751669656 0.763101275 1 10.84236131 -5.798430931 1.404166994 0.93614842 1.683995279 0.900322766 0.108908659 0.082439232 0.325865022 0.016160617 0.040001381 1.59E-06 5.798430931 0.747846859 S(ph)STVTEAPIAVVTSR ddPTM_HeLa_CUDC101_4h_R1 2 SSTVTEAPIAVVTSR 15 0 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 0 S(0.739)S(0.181)T(0.08)VTEAPIAVVTSR;S(0.655)S(0.148)T(0.196)VT(0.001)EAPIAVVTSR ; 84.62 0.015839 24035100 2574.85 2878.22 2580.33 3043.12 4948.47 4351.06 5099.98 2987.12 4280.87 3815.8 TRUE FALSE FALSE 2273.029986 2966.894547 2719.830445 3167.231587 4583.431227 4268.07078 5296.687937 3327.161666 4104.410727 3793.103452 0.599253359 0.782181289 0.717046208 0.834997418 1.20835914 1.125218659 1.396399546 0.877160802 1.082071918 1 11.889163 -5.797429159 6.263515162 0.796745476 1.167701321 0.426033876 0.175912391 0.118102976 12.76829038 0.02698782 0.05008217 1.59E-06 5.797429159 0.370955844 TAFYNEDDS(ph)EEEQR ddPTM_HeLa_CUDC101_4h_R1 4 TAFYNEDDSEEEQR 14 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 TAFYNEDDS(1)EEEQR;TAFYNEDDS(1)EEEQR;TAFYNEDDS(1)EEEQR;TAFYNEDDS(1)EEEQR ;;; 293.38 1.25E-122 217506000 10816.4 8719.1 9112.7 9450.2 8000.8 9370.3 8437 7435.8 9112.4 9876.3 TRUE FALSE FALSE 9548.517989 8987.725136 9605.360126 9835.620003 7410.596924 9191.577139 8762.417916 8282.261415 8736.783015 9817.555328 0.9725963 0.915474865 0.978386147 1.001840038 0.754831185 0.936238894 0.892525443 0.843617493 0.889914314 1 13.26114811 -5.796929624 24.99999875 0.980993724 0.86502864 0.412822434 0.056471442 89.87962001 63312.67787 0.006896924 0.012502078 1.60E-06 5.796929624 -0.115965085 VPS(ph)PGPPTLTSYSVLR ddPTM_HeLa_CUDC101_4h_R1 1 VPSPGPPTLTSYSVLR 16 0 F8W130;Q12815;F8W1U0 F8W130 TROAP Tastin 1 0 VPS(0.998)PGPPT(0.001)LTSYSVLR 71.143 0.030563 23522000 531.07 553.87 558.65 762.24 717.84 898.86 908.77 637.21 784.18 752.69 TRUE FALSE FALSE 468.8187796 570.9340782 588.8523088 793.3274419 664.8863733 881.7157431 943.8215633 709.7474107 751.8557685 748.2129664 0.626584677 0.763063598 0.787011633 1.060296303 0.888632519 1.178428847 1.261434385 0.948590097 1.00486867 1 9.547305158 -5.796709481 1.358167077 0.813094287 1.129704696 0.374865993 0.145077402 0.3336301 1.230621544 0.026977706 0.067966873 1.60E-06 5.796709481 0.31661041 S(ph)PAGSPELR ddPTM_HeLa_CUDC101_4h_R1 1 SPAGSPELR 9 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 S(0.997)PAGS(0.003)PELR 83.883 0.037298 9203800 1236.5 836.49 962.49 966.35 879.78 952.96 809.39 914.29 940.42 913.85 TRUE FALSE FALSE 1091.559344 862.2612654 1014.525121 1005.76193 814.8803822 934.7838757 840.6084434 1018.369078 901.6554896 908.4143796 1.201609496 0.949193765 1.116808742 1.107162054 0.897035979 1.029028048 0.925357923 1.121040244 0.992559684 1 9.827206733 -5.796699051 24.99896708 1.087801417 0.990840736 0.077633976 0.090364951 225.3481895 159770.2834 0.014372837 0.026053695 1.60E-06 5.796699051 -0.096960681 SPSLS(ph)PSPPSPLEK ddPTM_HeLa_CUDC101_4h_R1 2 SPSLSPSPPSPLEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.019)PS(0.261)LS(0.555)PS(0.165)PPSPLEK;SPSLS(0.5)PS(0.5)PPSPLEK ; 143.05 0.00043211 25625000 7173.4 8224.2 6430.7 7063.2 6475.4 6163.9 6152.7 7391.7 7660 7855.7 TRUE FALSE FALSE 6332.544926 8477.577854 6778.363094 7351.267826 5997.722643 6046.333877 6390.0117 8233.14125 7344.251558 7808.973947 0.810931752 1.085619943 0.868022245 0.941387162 0.768055148 0.774280196 0.818290821 1.05431793 0.940488675 1 12.93091728 -5.795924315 24.98479429 0.921572965 0.845528653 0.131200195 0.102144579 333.5222316 241640.3976 0.016407094 0.029741372 1.60E-06 5.795924315 -0.076044312 IS(ph)GLIYEETR ddPTM_HeLa_CUDC101_4h_R1 1 ISGLIYEETR 10 0 P62805 P62805 HIST1H4A Histone H4 1 0 IS(0.999)GLIYEETR 88.803 0.030299 1738700 657.27 656.88 738.23 673.29 1071.1 964.53 637.81 808.14 753.74 847.16 TRUE FALSE FALSE 580.225807 677.1176942 778.1409468 700.7496764 992.0870869 946.1331973 662.4105454 900.135391 722.6705182 842.1210546 0.689005225 0.804062184 0.924025047 0.832124636 1.178081324 1.123512103 0.786597772 1.068890733 0.858155148 1 9.717883825 -5.795331619 24.92745576 0.850225306 1.027239809 0.362743695 0.121678795 192.6276893 141675.5382 0.02224905 0.040331407 1.60E-06 5.795331619 0.177014502 YDDYRDYDS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 YDDYRDYDSPER 12 1 P52756;C9JR02;C9J9P7;C9JFQ5;F8W910;P52756-3;P52756-4;P52756-2;P52756-5 P52756 RBM5 RNA-binding protein 5 1 0 YDDYRDYDS(1)PER;YDDYRDYDS(1)PER ; 167.22 8.70E-05 34625000 4197.6 3470.5 3607.5 3597.9 2875.7 3184.4 3091 3161.8 4072.9 3627.6 TRUE FALSE FALSE 3705.563691 3577.421991 3802.532362 3744.637913 2663.56534 3123.662876 3210.220905 3521.726532 3905.013338 3606.022874 1.027604045 0.99206858 1.054494798 1.038439867 0.738643495 0.866234903 0.890238642 0.976623459 1.08291419 1 11.81619283 -5.794466211 24.99977324 1.016634321 0.86940666 0.636116766 0.060283465 89.72111442 67914.46995 0.008154157 0.014781352 1.61E-06 5.794466211 -0.147227661 AGDLLEDS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 7 AGDLLEDSPK 10 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK;AGDLLEDS(1)PK ;;;;;; 150.14 0.00047846 306309100 38289.7 35283.6 36203.6 33196.7 25999.8 32303.3 27413.3 26244.1 35545.3 32956.2 TRUE FALSE FALSE 33801.43941 36370.64589 38160.87613 34550.60491 24081.84655 31687.16837 28470.64016 29231.62226 34080.10769 32760.17506 1.031784456 1.110209144 1.164855684 1.054652634 0.735095173 0.967246613 0.869062516 0.892291394 1.040290769 1 14.99965545 -5.794411845 24.99877136 1.038257069 0.873385355 0.641627541 0.07161916 109.5472339 83055.25958 0.011142013 0.020197557 1.61E-06 5.794411845 -0.164871714 T(ph)SQVGAASAPAKESPR ddPTM_HeLa_CUDC101_4h_R1 1 TSQVGAASAPAKESPR 16 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 T(0.374)S(0.374)QVGAAS(0.003)APAKES(0.249)PR 115 0.017576 687860000 4667.1 3729.7 4016.3 3916.3 3513.1 3583.8 3370 3805.3 4049.6 3961.2 TRUE FALSE FALSE 4120.029613 3844.607636 4233.433327 4076.023642 3253.945612 3515.444986 3499.982029 4238.47997 3882.673774 3937.638606 1.046319895 0.976373919 1.075119824 1.035144169 0.826369796 0.892779998 0.888853036 1.076401467 0.986041169 1 11.94311499 -5.794378626 24.99606849 1.023857641 0.916774647 0.353225598 0.065209559 137.7879292 104560.5407 0.009109009 0.016512282 1.61E-06 5.794378626 -0.107082995 SSS(ph)VGSSSSYPIS(ph)PAVSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 S(0.068)S(0.021)S(0.91)VGSSS(0.001)S(0.001)YPIS(0.993)PAVS(0.005)R 119.5 0.00090023 189980000 1977.7 2050.8 1787.8 2034.4 2754.7 2471.1 2826.1 2258.7 2528.8 1973.3 TRUE FALSE FALSE 1745.877004 2113.982717 1884.453876 2117.371625 2551.491269 2423.967885 2935.103624 2515.821278 2424.561794 1961.562724 0.890043934 1.077703349 0.960690093 1.079431007 1.300744166 1.235733049 1.49630883 1.282559689 1.236035822 1 10.93778775 -5.792629339 1.233971478 0.954123966 1.37375437 0.55126755 0.118086078 0.125433819 0.37853396 0.012432137 0.033089425 1.61E-06 5.792629339 0.419630404 HFFHHADEDDEEEDDS(ph)PPER ddPTM_HeLa_CUDC101_4h_R1 2 HFFHHADEDDEEEDDSPPER 20 0 A0A087WZV0;O43314-2;O43314;D6RFG4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 HFFHHADEDDEEEDDS(1)PPER;HFFHHADEDDEEEDDS(1)PPER ; 125.92 1.70E-05 37229000 3476.3 2752.3 3180.1 2898.8 3835.1 3223.5 2930 3253.7 3140.6 3252.1 TRUE FALSE FALSE 3068.813384 2837.095101 3352.025825 3017.025594 3552.192314 3162.017108 3043.011081 3624.088056 3011.143139 3232.756365 0.949286936 0.877608697 1.036894046 0.933267235 1.098812256 0.978117975 0.941305418 1.121052021 0.931447594 1 11.65854907 -5.791841287 24.99997208 0.969687038 1.024092059 0.248601332 0.06408628 285.508208 234777.3325 0.008956687 0.016236571 1.61E-06 5.791841287 0.054405021 KMS(ph)DDEDDDEEEYGKEEHEK ddPTM_HeLa_CUDC101_4h_R1 1 KMSDDEDDDEEEYGKEEHEK 20 2 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 0 KMS(1)DDEDDDEEEYGKEEHEK 59.15 0.011146 93704000 3536.5 3730.5 3057 3197.5 2585.7 2952 2917.8 2422.2 3340.4 3392.4 TRUE FALSE FALSE 3121.956831 3845.432283 3222.270667 3327.907871 2394.958062 2895.695518 3030.340523 2697.933457 3202.707298 3372.221854 0.925786311 1.140326008 0.955533416 0.986859114 0.710201809 0.858690692 0.898618375 0.800046253 0.949732087 1 11.71948374 -5.79177614 24.99787692 0.979336882 0.825712871 0.588262893 0.071495532 120.6261062 99397.13988 0.010680615 0.019361963 1.62E-06 5.79177614 -0.153624011 RPTPNDDTLDEGVGLVHSNIATEHIPS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 2 RPTPNDDTLDEGVGLVHSNIATEHIPSPAK 30 1 Q01581 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 1 0 RPTPNDDTLDEGVGLVHSNIAT(0.049)EHIPS(0.95)PAK;RPTPNDDTLDEGVGLVHS(0.001)NIAT(0.227)EHIPS(0.772)PAK ; 128.4 4.02E-14 297440000 11539.3 9215.3 9637.7 9033.4 10991.1 9632.5 8212.5 8742.4 10160.3 10634.9 TRUE FALSE FALSE 10186.68075 9499.21247 10158.74321 9401.821098 10180.30845 9448.776111 8529.258876 9737.599478 9741.488134 10571.64314 0.963585377 0.898555914 0.960942692 0.889343404 0.962982605 0.893785004 0.80680541 0.921105579 0.921473417 1 13.36791201 -5.791741445 0.216492448 1.017195437 0.807072206 0.203407342 0.046111688 3.087301859 0.256386826 0.05334792 0.190975554 1.62E-06 5.791741445 -0.210123231 SSS(ph)PGKPQAVSSLNSSHSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSPGKPQAVSSLNSSHSR 19 1 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 S(0.129)S(0.129)S(0.742)PGKPQAVSSLNSSHSR 94.845 0.0011094 7302400 4148.2 1896.4 2261.3 2274.4 5800.6 3870.6 3419.2 3133.3 3678.9 3190.8 TRUE FALSE FALSE 3661.954284 1954.825836 2383.552718 2367.159863 5372.701294 3796.774754 3551.079689 3489.982207 3527.254185 3171.82098 1.154527417 0.616310267 0.751477695 0.746309416 1.693885414 1.197033117 1.119571285 1.100308696 1.112059668 1 11.63109563 -5.791636701 24.99999814 0.989407849 1.26064399 0.356018928 0.231232306 238.9855195 197852.6236 0.037195126 0.067427967 1.62E-06 5.791636701 0.271236141 SGSLDSELS(ph)VSPK ddPTM_HeLa_CUDC101_4h_R1 2 SGSLDSELSVSPK 13 0 Q12802-4;Q12802;Q12802-2;A0A087WTD7;A8MYJ1 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 SGSLDSELS(0.703)VS(0.297)PK;SGSLDS(0.004)ELS(0.908)VS(0.088)PK ; 117.27 0.0026821 291170000 7509.2 5992.2 6500.8 6438.1 6296.1 6374.6 5889 5903.5 6109.8 6798.8 TRUE FALSE FALSE 6628.982959 6176.812579 6852.252912 6700.673546 5831.649247 6253.015126 6116.140703 6575.530577 5857.951458 6758.360435 0.980856677 0.913951341 1.013892789 0.991464366 0.862879289 0.925226641 0.904974033 0.972947602 0.866771093 1 12.72245758 -5.790870996 24.99137835 0.986274802 0.916305941 0.035936847 0.051758983 128.4754281 109092.4817 0.005084018 0.009216544 1.62E-06 5.790870996 -0.069968862 LGSAPAASPALAS(ph)PEGPK ddPTM_HeLa_CUDC101_4h_R1 2 LGSAPAASPALASPEGPK 18 0 Q6ZUT6-4;Q6ZUT6;Q6ZUT6-2 Q6ZUT6-4 C15orf52 Uncharacterized protein C15orf52 1 0 LGSAPAASPALAS(1)PEGPK;LGS(0.005)APAAS(0.152)PALAS(0.844)PEGPK ; 204.9 1.62E-33 0 3772 3169.2 3232.1 3104.1 2850.7 2699 2543.5 2230.85 3669.8 3380.2 TRUE FALSE FALSE 3329.851878 3266.839296 3406.837103 3230.698615 2640.40954 2647.521072 2641.603647 2484.800947 3518.529291 3360.09442 0.990999496 0.972246279 1.013911122 0.961490426 0.78581409 0.787930558 0.786169469 0.73950331 1.04715191 1 11.71428606 -5.790168696 3.794862043 0.994550788 0.773755132 0.957932609 0.022977006 0.020891405 0.641437689 0.002264655 0.004422644 1.62E-06 5.790168696 -0.220795656 QGGSQPS(ph)SFSPGQSQVTPQDQEK ddPTM_HeLa_CUDC101_4h_R1 1 QGGSQPSSFSPGQSQVTPQDQEK 23 0 Q9H0L4 Q9H0L4 CSTF2T Cleavage stimulation factor subunit 2 tau variant 1 0 QGGS(0.067)QPS(0.381)S(0.304)FS(0.246)PGQS(0.002)QVTPQDQEK 90.616 0.00015097 7226400 2044.5 1730.3 2046.9 1721.9 1881.2 1575.3 1685.4 1397.1 1988.1 2057.6 TRUE FALSE FALSE 1804.846809 1783.608492 2157.561606 1792.126525 1742.427624 1545.253777 1750.406443 1556.140217 1906.149677 2045.361304 0.882409776 0.872026125 1.054855982 0.876190686 0.851892338 0.755491841 0.855793272 0.760814343 0.93193788 1 10.99814 -5.789713857 2.506037732 0.944264013 0.79967462 0.572310656 0.058004737 0.175502648 2.250524165 0.009723246 0.020157843 1.62E-06 5.789713857 -0.144589393 PTYPELMQHPFFTLHESK ddPTM_HeLa_CUDC101_4h_R1 1 PTYPELMQHPFFTLHESK 18 0 P52564;P52564-2 P52564 MAP2K6 Dual specificity mitogen-activated protein kinase kinase 6 0 0 54.281 0.037143 942350 165.44 152.89 342.97 230.35 261.68 141.25 280.02 308.04 171.17 353.88 FALSE FALSE TRUE 146.047374 157.6003597 361.5119956 239.7446687 242.3763877 138.5558916 290.8204652 343.1060285 164.1143002 351.775106 0.415172568 0.448014533 1.027679303 0.681528239 0.689009494 0.393876341 0.826722699 0.975356194 0.466531876 1 8.458509581 -9.61496083 1.448878622 0.998455668 0.642998159 0 0.267214253 0.460725291 1.748541776 0.155873617 0.036472617 2.43E-10 9.61496083 -0.355457509 PVGVK(ac)IPTCK ddPTM_HeLa_CUDC101_4h_R1 2 PVGVKIPTCK 10 1 G3V438;H0YJG7;O95433-2;O95433 G3V438 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 0 1 ; PVGVK(1)IPTCK;PVGVK(1)IPTCK 111.61 0.0054189 1001620 1500.47 1025.91 1155.93 1196.26 1084.02 937.59 903.2 1323.15 1083.57 821.24 FALSE TRUE FALSE 1324.587181 1057.517071 1218.423072 1245.048653 1004.054004 919.7070329 938.0367266 1473.772048 1038.904786 816.355228 1.622562257 1.295412873 1.492515795 1.525130986 1.229922918 1.12660151 1.149054596 1.805307294 1.272613625 1 9.673053251 -9.537295605 1.301923497 1.000213811 1.414123838 0.155729833 0.219122629 0.40647397 1.234917587 0.147869009 0.035299929 2.90E-10 9.537295605 0.413910027 PVIVEPLEQLDDEDGLPEK ddPTM_HeLa_CUDC101_4h_R1 2 PVIVEPLEQLDDEDGLPEK 19 0 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 ; ; 199.91 4.03E-17 29422000 21537 17100.8 14964.4 16526.8 12913.5 14050.1 13602.6 12663.2 15843 23166 FALSE FALSE TRUE 19012.46551 17627.65538 15773.42073 17200.83434 11960.89683 13782.11775 14127.25684 14104.7275 15189.94483 23028.2076 0.825616385 0.765481 0.684960853 0.746946295 0.519401989 0.598488514 0.61347618 0.612497844 0.65962341 1 14.4911145 -7.294468432 0.392946326 1.004692093 0.558842367 0.263802388 0.112567681 0.211320979 0.089674526 0.029100809 0.032829566 5.08E-08 7.294468432 -0.445849726 GPSQATS(ph)PIR ddPTM_HeLa_CUDC101_4h_R1 1 GPSQATSPIR 10 0 Q7RTP6;J3QR21;J3QLA3 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 GPSQAT(0.045)S(0.955)PIR 85.973 0.034564 38453000 4095.7 2976.7 2902.1 3123.8 2637.6 2886.1 2860.7 2499 2473.2 2867.3 TRUE FALSE FALSE 3615.608255 3068.408599 3058.996304 3251.202066 2443.029503 2831.052451 2971.038157 2783.476059 2371.253649 2850.245172 1.26852535 1.076541986 1.073239711 1.140674528 0.8571296 0.993266291 1.042379858 0.976574256 0.831947256 1 11.47687031 -5.7895835 24.99970051 1.121970997 0.974549672 0.022981382 0.120000035 199.516308 177224.7212 0.016074967 0.029142486 1.62E-06 5.7895835 -0.147421324 TPGDFSYAYQKPEET(ph)TRSPDEEDYDYESYEK ddPTM_HeLa_CUDC101_4h_R1 4 TPGDFSYAYQKPEETTRSPDEEDYDYESYEK 31 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.001)PGDFS(0.002)Y(0.007)AY(0.006)QKPEET(0.704)T(0.139)RS(0.139)PDEEDY(0.002)DYESYEK;T(0.001)PGDFS(0.006)Y(0.138)AY(0.122)QKPEET(0.456)T(0.138)RS(0.138)PDEEDY(0.001)DYESYEK;T(0.003)PGDFS(0.02)Y(0.067)AY(0.057)QKPEET(0.487)T(0.161)RS(0.161)PDEEDY(0.016)DY(0.016)ES(0.012)Y(0.001)EK;TPGDFSY(0.006)AY(0.059)QKPEET(0.602)T(0.16)RS(0.16)PDEEDY(0.009)DY(0.004)ES(0.001)YEK ;;; 72.603 2.23E-05 654950000 6899.7 6057.76 5906.38 6292.6 7818.7 6895.3 6265 6715.4 7566.5 7398.9 TRUE FALSE FALSE 6090.927625 6244.392405 6225.696769 6549.239427 7241.930078 6763.783641 6506.643149 7479.853991 7254.605667 7354.891014 0.828146551 0.849012228 0.846470295 0.890460432 0.984641386 0.919630709 0.884668874 1.016990459 0.986364809 1 12.84448825 -5.789342224 24.95568699 0.903332275 0.944435323 0.133954203 0.062697416 506.2432379 452771.4627 0.011567704 0.020971472 1.62E-06 5.789342224 0.041103048 REGPVGGES(ph)DSEEMFEK ddPTM_HeLa_CUDC101_4h_R1 2 REGPVGGESDSEEMFEK 17 1 Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5;J3QL92 Q9Y4B5-2 MTCL1 Microtubule cross-linking factor 1 1 0 REGPVGGES(0.996)DS(0.004)EEMFEK;REGPVGGES(0.816)DS(0.184)EEMFEK ; 190.67 4.01E-11 19438000 4645 4011.7 3416 3761.3 4785.2 4217.1 3985.2 3759.5 4409.5 3963.5 TRUE FALSE FALSE 4100.520141 4135.295722 3600.679293 3914.702072 4432.205329 4136.665844 4138.910499 4187.466284 4227.738544 3939.924926 1.040760984 1.049587441 0.913895407 0.993598138 1.124946646 1.049935195 1.050504915 1.062828953 1.073050534 1 11.94395242 -5.789076782 24.99997438 1.011842153 1.06893486 0.302939022 0.044664731 203.6300198 184197.2213 0.006291034 0.011405301 1.63E-06 5.789076782 0.057092708 FES(ph)PEVAER ddPTM_HeLa_CUDC101_4h_R1 2 FESPEVAER 9 0 A0A087X0X3;P52272-2;P52272 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 FES(1)PEVAER;FES(1)PEVAER ; 126.71 0.0040826 53649000 8322.4 6952.5 6083.8 6315.3 6909.5 6308.5 5358.7 5421.1 7526.9 6869.9 TRUE FALSE FALSE 7346.860888 7166.698284 6412.70863 6572.865231 6399.799951 6188.175873 5565.386854 6038.216111 7216.637996 6829.037529 1.075826697 1.049444853 0.939035494 0.962487789 0.937145231 0.906156372 0.814959184 0.884197236 1.056757701 1 12.73746655 -5.789006041 0.83046394 1.03642851 0.849296227 0.800886817 0.035406639 0.248053254 0.315903957 0.00751656 0.026323305 1.63E-06 5.789006041 -0.187132283 S(ph)TSFRQGPEESGLGDGTGPK ddPTM_HeLa_CUDC101_4h_R1 1 STSFRQGPEESGLGDGTGPK 20 1 Q92614;A0A0D9SFK2;Q92614-2;Q92614-3;Q92614-4;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 S(0.347)T(0.347)S(0.306)FRQGPEESGLGDGTGPK 66.3 0.0075715 20795000 1291.4 1840.8 1561.9 1394.9 2316.2 2037.2 1844.6 2293.9 1473.6 1183.5 TRUE FALSE FALSE 1140.02405 1897.512866 1646.341038 1451.790051 2145.338541 1998.343804 1915.74684 2555.028304 1412.857584 1176.460489 0.96902876 1.612899781 1.399401895 1.234032137 1.823553413 1.698606814 1.628398792 2.171792701 1.200939256 1 10.20023715 -5.788932093 0.393426435 0.93594031 2.144151843 0.660310577 0.211757516 0.720364087 0.169764786 0.072583042 0.353814828 1.63E-06 5.788932093 1.208211533 FEEVEEEPEVIPGPPSES(ph)PGMLTK ddPTM_HeLa_CUDC101_4h_R1 1 FEEVEEEPEVIPGPPSESPGMLTK 24 0 O43395 O43395 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 1 0 FEEVEEEPEVIPGPPS(0.168)ES(0.825)PGMLT(0.007)K 115.66 1.70E-07 6992500 3846.2 4166.1 3433 3723.1 4637.2 5016.6 4141.5 2360.1 4269.7 4470.2 TRUE FALSE FALSE 3395.354266 4294.452603 3618.598364 3874.944111 4295.122995 4920.916713 4301.239042 2628.764244 4093.701159 4443.611052 0.764097989 0.966433055 0.814337331 0.872025941 0.966583921 1.107413915 0.96796029 0.591582885 0.921255508 1 12.11751683 -5.788535498 24.12686236 0.88526923 0.926857009 0 0.137554414 668.4963453 595239.3453 0.02195143 0.039799309 1.63E-06 5.788535498 0.041587779 PVSSAASVYAGAGGSGSR ddPTM_HeLa_CUDC101_4h_R1 1 PVSSAASVYAGAGGSGSR 18 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 143.56 0.010552 1309000 303.66 256.66 146.42 270.45 349.51 257.39 222.83 267.8 0 185.9 FALSE FALSE TRUE 268.0654351 264.5673904 154.3359081 281.48012 323.7273436 252.4807146 231.4246277 298.2852695 0 184.7942585 1.450615605 1.431686203 0.835176966 1.523208146 1.751825767 1.366280081 1.252336677 1.614147928 0 1 7.529776123 AAPQS(ph)PSVPK ddPTM_HeLa_CUDC101_4h_R1 2 AAPQSPSVPK 10 0 E9PF10;O75694-2;O75694 E9PF10 NUP155 Nuclear pore complex protein Nup155 1 0 AAPQS(0.672)PS(0.328)VPK;AAPQS(0.835)PS(0.165)VPK ; 142.1 0.0010571 849638000 12355.8 9906 11071.1 10470.1 10852.5 10666.7 10835.7 8535.1 11417.2 10793.4 TRUE FALSE FALSE 10907.47185 10211.19212 11669.63715 10897.11593 10051.9327 10463.25047 11253.63658 9506.701284 10946.57818 10729.20038 1.016615542 0.95171977 1.087652084 1.015650333 0.93687622 0.975212514 1.048879337 0.886058695 1.020260392 1 13.38925494 -5.788257044 24.97204799 1.010489968 0.968940855 0.214074397 0.048994563 299.2208398 278627.4096 0.006697619 0.012142815 1.63E-06 5.788257044 -0.041549113 DTHEDHDTS(ph)TENTDESNHDPQFEPIVSLPEQEIK ddPTM_HeLa_CUDC101_4h_R1 1 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 C9JJ34;P43487-2;P43487 C9JJ34 RANBP1 Ran-specific GTPase-activating protein 1 0 DT(0.001)HEDHDT(0.088)S(0.443)T(0.443)ENT(0.02)DES(0.004)NHDPQFEPIVSLPEQEIK 72.603 1.75E-06 12957000 3796 1814.5 959.81 1567.3 5922.6 4289.9 3284.6 1676.9 3871.3 2691.7 TRUE FALSE FALSE 3351.038634 1870.402594 1011.700232 1631.221268 5485.701597 4208.077305 3411.288122 1867.791518 3711.723375 2675.689649 1.252401838 0.699035703 0.378108213 0.609645169 2.050201002 1.572707547 1.274919206 0.698059851 1.387202502 1 11.38569507 -5.788081898 24.99998688 0.99334893 1.402521835 0.237822846 0.423750584 302.3270046 283687.6324 0.065609107 0.118951008 1.63E-06 5.788081898 0.409172904 QGS(ph)SLNLFEDVQITEPEAEPESK ddPTM_HeLa_CUDC101_4h_R1 2 QGSSLNLFEDVQITEPEAEPESK 23 0 Q6WKZ4;E7EX40;Q6WKZ4-2;Q6WKZ4-3 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 0 QGS(0.714)S(0.286)LNLFEDVQITEPEAEPESK;QGS(0.652)S(0.348)LNLFEDVQITEPEAEPESK ; 147.69 1.75E-11 0 3163.7 2680.7 2189.84 2576.6 3559.4 3946.6 3325.1 2598.8 2181.09 2175.4 TRUE FALSE FALSE 2792.855882 2763.28919 2308.229374 2681.684885 3296.830153 3871.32518 3453.350221 2894.636887 2091.184547 2162.460624 1.291517566 1.277844858 1.067408742 1.240108077 1.524573496 1.790240774 1.596954036 1.338584784 0.967039364 1 11.07845815 -5.787974019 3.461415525 1.149444425 1.588845077 0.681251924 0.1426788 0.113258358 2.834327514 0.023090191 0.045636179 1.63E-06 5.787974019 0.439400653 PVTVEPMDQLDDEEGLPEK ddPTM_HeLa_CUDC101_4h_R1 2 PVTVEPMDQLDDEEGLPEK 19 0 Q15233;Q15233-2;H7C367 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 0 ; ; 161.14 1.39E-05 12559900 18957.7 14774.1 13952.5 13513.4 11965.9 11563.8 10839.3 10063.6 13937.4 20165.2 FALSE FALSE TRUE 16735.50714 15229.27251 14706.81435 14064.53486 11083.1994 11343.23978 11257.37543 11209.19955 13362.89447 20045.25649 0.834886156 0.759744457 0.733680527 0.701639057 0.552908834 0.565881498 0.561597974 0.559194618 0.666636243 1 14.29097326 -6.818377136 0.344390882 1.009487666 0.480624471 0.437395777 0.103989851 0.171650655 0.052294859 0.019941446 0.034781131 1.52E-07 6.818377136 -0.528863195 SYIEGYVPSQADVAVFEAVS(ph)SPPPADLCHALR ddPTM_HeLa_CUDC101_4h_R1 3 SYIEGYVPSQADVAVFEAVSSPPPADLCHALR 32 0 P24534;C9JZW3;F2Z2G2 P24534 EEF1B2 Elongation factor 1-beta 1 0 SYIEGYVPSQADVAVFEAVS(0.775)S(0.225)PPPADLCHALR;SYIEGYVPSQADVAVFEAVS(0.578)S(0.422)PPPADLCHALR;SYIEGY(0.002)VPS(0.015)QADVAVFEAVS(0.543)S(0.44)PPPADLCHALR ;; 111.67 9.11E-12 30973100 3774.38 3858.18 3665.09 3452.8 4700.63 4019.81 3592.56 3738.89 4356.81 4184.5 TRUE FALSE FALSE 3331.952898 3977.045953 3863.235852 3593.620108 4353.87389 3943.138822 3731.126243 4164.510124 4177.220448 4159.610408 0.801025233 0.956110203 0.928749444 0.863931896 1.046702326 0.947958687 0.896989352 1.001177927 1.004233579 1 12.0222327 -5.787622909 24.99350815 0.907285185 0.965959618 0.06361764 0.068447778 393.1319506 375263.443 0.012169204 0.022063505 1.63E-06 5.787622909 0.058674433 SPRS(ph)PSGHPHVR ddPTM_HeLa_CUDC101_4h_R1 2 SPRSPSGHPHVR 12 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 S(0.399)PRS(0.59)PS(0.011)GHPHVR;S(0.162)PRS(0.811)PS(0.027)GHPHVR ; 63.292 0.033358 1813500 190.877 156.92 300.88 0 1420.73 448.4 568.51 736.77 528.02 342.46 TRUE FALSE FALSE 168.5026874 161.7545192 317.1464829 0 1315.925578 439.8475171 590.4376211 820.6409187 506.2547921 340.4230327 0.494980278 0.475157389 0.931624633 0 3.865559765 1.292061567 1.734423245 2.410650396 1.48713437 1 8.411184841 -5.787403036 24.9999972 0.698682777 2.20961396 0.537492129 0.72087572 119.1750203 114751.4757 0.094242778 0.17086976 1.63E-06 5.787403036 1.510931183 RAGDLLEDS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 RAGDLLEDSPK 11 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK;RAGDLLEDS(1)PK ;;; 147.7 0.0012419 1973270000 28445.7 27366.4 26649.6 24976.3 20731.4 23394.5 21023.2 21383.6 27144.9 23980.2 TRUE FALSE FALSE 25111.33817 28209.52635 28090.35799 25994.94147 19202.08592 22948.28889 21834.07187 23817.82259 26025.97573 23837.5647 1.053435553 1.183406388 1.178407205 1.090503237 0.805538912 0.962694351 0.915952285 0.999171807 1.091805143 1 14.54094923 -5.787151747 24.99972286 1.055845929 0.923479825 0.528504931 0.076253222 184.5743135 179458.2458 0.012738892 0.023096993 1.63E-06 5.787151747 -0.132366104 SS(ph)PSTGSLDSGNESK ddPTM_HeLa_CUDC101_4h_R1 1 SSPSTGSLDSGNESK 15 0 A0A0U1RQT1;A0A087X1H5;Q15057 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 S(0.226)S(0.772)PS(0.002)TGSLDSGNESK 192.4 9.78E-12 22255000 3147.8 2385.2 3134 2839 2540.8 2626.8 2490.5 2559.4 3029.9 3106.2 TRUE FALSE FALSE 2778.819656 2458.685185 3303.43352 2954.786691 2353.370246 2576.698167 2586.559419 2850.751751 2905.00624 3087.724184 0.899957214 0.796277465 1.069860299 0.956946448 0.76216984 0.834497518 0.837691214 0.923253367 0.940824396 1 11.59232817 -5.786879418 24.97306739 0.94863794 0.838930314 0.317756328 0.074880089 202.5690849 198850.3471 0.01165864 0.021138722 1.63E-06 5.786879418 -0.109707627 IS(ph)MSEVDLNVAAPK ddPTM_HeLa_CUDC101_4h_R1 5 ISMSEVDLNVAAPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(0.922)MS(0.078)EVDLNVAAPK;IS(0.656)MS(0.344)EVDLNVAAPK;IS(0.999)MS(0.001)EVDLNVAAPK;IS(0.997)MS(0.003)EVDLNVAAPK;IS(0.998)MS(0.002)EVDLNVAAPK ;;;; 238.83 1.10E-43 188231200 15522.8 14026 12489 13274.3 16966.5 18115.7 16540.9 12170.8 12935.2 12339.9 TRUE FALSE FALSE 13703.24092 14458.12444 13164.19312 13815.68333 15714.9151 17770.17321 17178.88805 13556.27468 12402.00558 12266.50173 1.117127052 1.178667297 1.073182347 1.126293677 1.281124435 1.448674904 1.400471662 1.105145948 1.011046658 1 13.58243625 -5.786504861 2.928784367 1.069950261 1.331742297 0.570030997 0.09625431 0.135106948 2.376391837 0.014853943 0.030046841 1.63E-06 5.786504861 0.261792036 MQY(ph)HALS(ph)LAMHGFSVTLLGFCNSK ddPTM_HeLa_CUDC101_4h_R1 1 MQYHALSLAMHGFSVTLLGFCNSK 24 0 K7EPU3;Q9BT22 K7EPU3 ALG1 Chitobiosyldiphosphodolichol beta-mannosyltransferase 2 0 MQY(1)HALS(1)LAMHGFSVTLLGFCNSK 47.472 0.0024474 0 773 647.84 708.42 604.99 1025.6 807.46 751.95 705.72 836.03 623.14 TRUE FALSE FALSE 682.3901118 667.7991825 746.7193281 629.6641072 949.9435313 792.0590458 780.9529634 786.0563122 801.5684895 619.4335356 1.101635725 1.078080446 1.205487409 1.016516012 1.533568134 1.278682862 1.260753444 1.268992179 1.2940347 1 9.274805681 -5.786192999 24.99793395 1.062776272 1.326101956 0.422386662 0.11597196 101.4720298 102473.3086 0.01370819 0.024855911 1.64E-06 5.786192999 0.263325684 VTPRPQQTSASS(ph)PSSVNSR ddPTM_HeLa_CUDC101_4h_R1 1 VTPRPQQTSASSPSSVNSR 19 1 Q9ULD2-2;Q9ULD2;H0YC63;Q9ULD2-5 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 VTPRPQQT(0.005)S(0.005)AS(0.069)S(0.488)PS(0.291)S(0.083)VNS(0.059)R 83.727 0.002935 13640000 471.22 469.42 492.95 468.76 608.1 723.19 401.41 375.9 445.66 580.77 TRUE FALSE FALSE 415.9843059 483.8822738 519.6003681 487.878059 563.2416745 709.3963557 416.8925182 418.6909366 427.2897062 577.3155542 0.720549278 0.83815908 0.900028354 0.845080399 0.975621859 1.228784415 0.722122443 0.725237582 0.740131983 1 9.173216285 -5.786000547 24.71944365 0.863705789 0.921871893 0.037430541 0.152416704 742.9224877 747708.5575 0.025016876 0.045362123 1.64E-06 5.786000547 0.058166104 SST(ph)SS(ph)S(ph)SGSPS(ph)PSRR ddPTM_HeLa_CUDC101_4h_R1 1 SSTSSSSGSPSPSRR 15 1 H3BV80 H3BV80 RNPS1 4 0 S(0.048)S(0.048)T(0.254)S(0.656)S(0.586)S(0.586)S(0.43)GS(0.384)PS(0.504)PS(0.504)RR 46.069 0.0033534 0 1746 1793.8 1530.9 1634.6 2233.1 2205.2 2040.9 1868.4 2204.4 1646.1 TRUE FALSE FALSE 1541.336527 1849.064852 1613.665085 1701.266053 2068.368662 2163.139484 2119.618197 2081.091104 2113.533699 1636.308924 0.941959372 1.130021859 0.986161636 1.039697351 1.264045335 1.321962774 1.295365542 1.27182042 1.291647114 1 10.67622943 -5.785849894 3.171905046 0.987644638 1.297536642 0.428954368 0.107831584 0.058384785 1.212316136 0.007964857 0.015935527 1.64E-06 5.785849894 0.309892004 PYMAEQGRERAK ddPTM_HeLa_CUDC101_4h_R1 1 PYMAEQGRERAK 12 2 A0A3B3IRY6 A0A3B3IRY6 0 0 83.783 0.016404 1459400 606.58 593.33 380.34 580.07 624.18 404.15 574.51 755.81 602.24 530.77 FALSE FALSE TRUE 535.4776119 611.609794 400.9023309 603.7277619 578.1354849 396.4415121 596.6690431 841.8483553 577.4154123 527.6129564 1.014906108 1.15920162 0.75984171 1.144262578 1.0957568 0.751386992 1.130883986 1.595579383 1.094392026 1 9.043336183 -4.305223141 3.688712417 1.001383885 1.635206395 0.626756755 0.136623867 0.099472379 2.426307647 0.016512342 0.158255273 4.95E-05 4.305223141 0.63382251 STPKEDDSSASTSQS(ph)TR ddPTM_HeLa_CUDC101_4h_R1 1 STPKEDDSSASTSQSTR 17 1 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 STPKEDDS(0.003)S(0.008)AS(0.026)T(0.035)S(0.035)QS(0.82)T(0.074)R 66.448 0.018426 7175000 1152.4 1313 1029 1095.1 1629.4 1218.3 1219 1392.1 1407.1 1345.4 TRUE FALSE FALSE 1017.317419 1353.451974 1084.630853 1139.762911 1509.202408 1195.062957 1266.017238 1550.571037 1349.098742 1337.397501 0.760669448 1.012004264 0.811001106 0.852224496 1.128462112 0.893573494 0.946627489 1.159394298 1.008749262 1 10.38521261 -5.785748073 24.99881206 0.886265512 1.016026721 0.219324208 0.109248799 263.4025079 270879.8842 0.017385618 0.031524744 1.64E-06 5.785748073 0.129761209 PYQYPALTPEQK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 PYQYPALTPEQKK 13 1 P04075;H3BQN4;J3KPS3;H3BUH7;H3BR04;H3BMQ8 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 1 PYQYPALTPEQK(1)K 184.87 3.03E-08 1013400 1271.5 864.01 693.67 830.99 1176.6 916.63 1097.1 1249.2 960.48 489.26 FALSE TRUE FALSE 1122.456697 890.629124 731.1718984 864.881364 1089.804562 899.14681 1139.415515 1391.403879 920.8886079 486.3498598 2.307920266 1.83125194 1.503386675 1.77831112 2.240783132 1.848765435 2.342789849 2.860911442 1.893469463 1 8.925850692 -10.36193913 0.420325496 2.11E-15 2.134091039 0.115407168 0.456377415 2.979862194 0.358984775 3.194187979 0.11029559 4.35E-11 10.36193913 2.134091039 TEGT(ph)PPPPGQPAK ddPTM_HeLa_CUDC101_4h_R1 3 TEGTPPPPGQPAK 13 0 F8VWT9;J3KPF0;Q9Y4D8-2;Q9Y4D8-4;Q9Y4D8;A0A494C150 F8VWT9 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 1 0 T(0.17)EGT(0.83)PPPPGQPAK;T(0.002)EGT(0.998)PPPPGQPAK;T(0.001)EGT(0.999)PPPPGQPAK ;; 169.58 2.51E-06 28849000 15431.3 10973.6 12182.6 12127.5 11983.9 12238.9 11330.9 10913.6 10329.3 10865.6 TRUE FALSE FALSE 13622.46641 11311.68361 12841.22821 12622.11187 11099.87157 12005.46337 11767.93661 12155.96011 9903.521882 10800.97093 1.261226097 1.04728396 1.188895729 1.168609003 1.027673498 1.111517053 1.089525811 1.125450683 0.916910336 1 13.39887339 -5.784711873 24.94894914 1.12817948 1.090253059 0 0.098101428 776.4647756 832396.7347 0.015103074 0.027390585 1.64E-06 5.784711873 -0.03792642 QAAPPIELDAVWEDIRER ddPTM_HeLa_CUDC101_4h_R1 2 QAAPPIELDAVWEDIRER 18 1 O75400-2;O75400-3;O75400 O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 0 ; ; 85.176 0.0088047 6054500 1867.14 1684.05 1663.52 1768.5 2256.46 1624.56 1684.76 1732.4 1830.91 1730.23 FALSE FALSE TRUE 1648.27668 1735.933584 1753.454923 1840.627074 2090.005441 1593.574225 1749.741758 1929.609413 1755.439115 1719.938515 0.958334653 1.009299791 1.01948698 1.070170275 1.215162881 0.926529763 1.017328086 1.121906043 1.020640621 1 10.74814128 -6.615148449 2.283559404 0.981122119 1.066173366 0.182075825 0.070940534 0.33091093 3.508218103 0.011389808 0.017046551 2.43E-07 6.615148449 0.085051247 THTTALAGRS(ph)PS(ph)PASGR ddPTM_HeLa_CUDC101_4h_R1 1 THTTALAGRSPSPASGR 17 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 THTTALAGRS(1)PS(0.999)PAS(0.001)GR 94.339 0.0055929 27219000 2201 1271.4 1190.7 1477.9 3623.6 2763.6 2299.9 1714.4 2511 2258.7 TRUE FALSE FALSE 1943.002116 1310.570327 1255.072844 1538.17515 3356.294247 2710.888934 2388.607913 1909.560366 2407.495517 2245.265152 0.865377577 0.583704034 0.558986471 0.685075056 1.494832022 1.20738031 1.063842242 0.850483233 1.072254435 1 11.13267011 -5.784459865 24.99999647 0.85839134 1.151488595 0.373354314 0.219150484 239.7430885 260357.8556 0.03504877 0.063561084 1.64E-06 5.784459865 0.293097255 QAASK(ac)AASK(ac)QR ddPTM_HeLa_CUDC101_4h_R1 1 QAASKAASKQR 11 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 2 QAASK(1)AASK(1)QR 132.03 0.0012398 281510 0 0 0 0 0 0 0 70.147 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 78.13225094 0 0 0 QADFEAHNILR ddPTM_HeLa_CUDC101_4h_R1 1 QADFEAHNILR 11 0 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 0 0 117.79 0.0043968 4006700 1890 1547 1594.5 1692.6 1745.3 1868.9 1652 1743.9 1856.9 1658.8 FALSE FALSE TRUE 1668.457065 1594.661236 1680.703493 1761.631544 1616.552696 1833.253846 1715.718193 1942.418527 1780.357796 1648.933384 1.011840188 0.967086513 1.019267067 1.068346097 0.980362647 1.111781631 1.040501824 1.177984839 1.079702681 1 10.6873174 -1 0.492367858 1.00347319 5.838453231 0.505808357 0.043303603 37.63218601 0.368415782 0.006365914 188.6885983 0.1 1 4.834980041 QADLYISEGLHPR ddPTM_HeLa_CUDC101_4h_R1 2 QADLYISEGLHPR 13 0 P40227;Q92526-3;Q92526 P40227 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 0 0 ; ; 140.33 0.00068792 11514700 9393.3 6983.5 5932.3 6597.1 10005.1 8402.7 7597.2 8052.7 9380.4 8461.1 FALSE FALSE TRUE 8292.231613 7198.653358 6253.018082 6866.158253 9267.043706 8242.432497 7890.226549 8969.386818 8993.735942 8410.773001 0.985906006 0.85588487 0.743453435 0.816352819 1.101806422 0.979985133 0.938109559 1.066416466 1.069311458 1 13.03802268 -4.253874014 22.8346493 0.959176125 1.066416637 0.091256976 0.106458887 593.2314556 1790401.067 0.015131891 0.201324404 5.57E-05 4.253874014 0.107240512 GLNPDGTPALSTLGGFSPASKPS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58-6;Q9UK58 Q9UK58-6 CCNL1 Cyclin-L1 1 0 GLNPDGTPALSTLGGFSPAS(0.031)KPS(0.595)S(0.375)PR 128.94 6.78E-11 93701000 2283.5 1744.4 1261.6 1659.5 1714.6 1399 1223.8 1219.7 1829.3 1663.3 TRUE FALSE FALSE 2015.831592 1798.142896 1329.805912 1727.181583 1588.117374 1372.316406 1271.002376 1358.545718 1753.89548 1653.406618 1.219198938 1.087538224 0.804282442 1.044619977 0.960512288 0.829993295 0.768717364 0.821664619 1.06077686 1 10.69122585 -5.784136323 0.741474164 1.098937363 0.778925288 0.535980632 0.096151935 0.48588435 0.476958269 0.02222745 0.08505929 1.64E-06 5.784136323 -0.320012075 DSDYVYPSLES(ph)DEDNPIFK ddPTM_HeLa_CUDC101_4h_R1 2 DSDYVYPSLESDEDNPIFK 19 0 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 DSDYVYPSLES(1)DEDNPIFK;DSDY(0.001)VY(0.004)PS(0.035)LES(0.96)DEDNPIFK ; 145.44 3.32E-05 6372100 8237.9 7748.4 7842.8 7101 9973.3 8549.7 7553.9 7606 9937.3 8493.3 TRUE FALSE FALSE 7272.26585 7987.11902 8266.805491 7390.609473 9237.589529 8386.628717 7845.256453 8471.836295 9527.680288 8442.781474 0.861359005 0.946029344 0.979156634 0.875376142 1.094140546 0.993349022 0.929226521 1.00344138 1.128500165 1 13.04350266 -5.78377987 24.99910839 0.933986145 0.998789239 0 0.081896822 304.1591397 340354.7116 0.009734767 0.017655216 1.65E-06 5.78377987 0.064803094 APFHT(ph)PPEEPNECDFK ddPTM_HeLa_CUDC101_4h_R1 1 APFHTPPEEPNECDFK 16 0 Q9UBU7 Q9UBU7 DBF4 Protein DBF4 homolog A 1 0 APFHT(1)PPEEPNECDFK 113.33 0.0017817 5742200 1253.6 1338 1074.2 1128.2 1917.1 1995.3 1614.9 1601.8 1592.7 1002.1 TRUE FALSE FALSE 1106.654908 1379.222194 1132.274501 1174.212872 1775.679352 1957.242977 1677.187234 1784.142437 1527.048232 996.1394646 1.110943746 1.384567365 1.136662628 1.178763531 1.782560992 1.964828266 1.683687168 1.791056876 1.532966303 1 9.960203931 -5.783688571 4.289958565 1.0925143 1.815120817 0.683809868 0.181905669 0.050936094 2.137065949 0.019604794 0.037925399 1.65E-06 5.783688571 0.722606517 QAEPELDLR ddPTM_HeLa_CUDC101_4h_R1 2 QAEPELDLR 9 0 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;F8W7E0;P20810-2;E9PCH5;P20810-3;H0Y7F0;E7EQ12;D6RC54;D6RAA8;E7EVY3;H0Y9H6 P20810-6;E7EVY3 CAST Calpastatin 0 0 ; ; 117.53 0.035948 8577600 5201 4749 4461.2 4370.3 4914.5 4183.9 4391.1 5051.7 5036.4 5207.4 FALSE FALSE TRUE 4591.346664 4895.311061 4702.385966 4548.539724 4551.967126 4104.099078 4560.466198 5626.765108 4828.79746 5176.426153 0.88697231 0.945693209 0.908423269 0.878702717 0.879364834 0.792844128 0.881006714 1.086998045 0.932843881 1 12.33774068 -9.372981832 0.713005986 1.012567956 0.900038274 0.055028047 0.073635257 1.199938483 0.891613869 0.084392933 0.014331808 4.24E-10 9.372981832 -0.112529682 QAESFEDLRR ddPTM_HeLa_CUDC101_4h_R1 1 QAESFEDLRR 10 1 A0A0C4DG98;Q8NI27 A0A0C4DG98 THOC2 THO complex subunit 2 0 0 96.229 0.0017981 0 1705.5 1641.4 1304.4 1541.7 1295.1 1536.4 1548.6 1032.8 1645.9 1502.9 FALSE FALSE TRUE 1505.583875 1691.969588 1374.91981 1604.57719 1199.563053 1507.09573 1608.330021 1150.369777 1578.055305 1493.960684 1.007780119 1.132539569 0.920318603 1.074042448 0.802941514 1.008792096 1.076554449 0.770013421 1.056289715 1 10.54492647 -5.806052435 24.99988164 1.011950015 0.932873449 0.228759177 0.099364749 189.4257604 106148.2073 0.013342381 0.0241852 1.56E-06 5.806052435 -0.079076566 DRS(ph)SSAPNVHINTIEPVNIDDLIR ddPTM_HeLa_CUDC101_4h_R1 3 DRSSSAPNVHINTIEPVNIDDLIR 24 1 H7C560;A0A2U3TZI2;A0A2R8Y8E0;P15056;A0A2R8Y679;A0A2R8Y492;A0A2R8YDP5 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINT(0.002)IEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR ;; 115.06 1.80E-07 29426200 3843.59 3291.83 2925.65 3373.84 5126.73 4670.03 4230.62 4314.62 4185.24 3542.58 TRUE FALSE FALSE 3393.050207 3393.247381 3083.819489 3511.439778 4748.541342 4580.956959 4393.796431 4805.778901 4012.722636 3521.508577 0.963521778 0.96357777 0.875709777 0.997140771 1.348439522 1.300850717 1.247702891 1.364693226 1.139489667 1 11.78197788 -5.783270291 8.194702511 0.972473724 1.309681498 0.84249786 0.068690919 0.033106287 10.01159087 0.006633443 0.012262844 1.65E-06 5.783270291 0.337207774 SGYMS(ph)DSDLMGK ddPTM_HeLa_CUDC101_4h_R1 2 SGYMSDSDLMGK 12 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 SGYMS(0.996)DS(0.004)DLMGK;S(0.003)GYMS(0.853)DS(0.144)DLMGK ; 135.94 0.0013766 145718000 4588.5 5167.3 4612.7 4553.5 6541 5676.9 5166.3 4867.7 5519.2 5369.2 TRUE FALSE FALSE 4050.642986 5326.498388 4862.076515 4739.211412 6058.483462 5568.622591 5365.565922 5421.819292 5291.69624 5337.26376 0.758936258 0.997982979 0.910968004 0.887947762 1.13512911 1.043347835 1.005302747 1.015842487 0.991462382 1 12.38188459 -5.782493597 24.98029752 0.895010393 1.04625122 0.34984504 0.077626701 195.7172483 232213.1796 0.014561641 0.026413975 1.65E-06 5.782493597 0.151240827 MRKMS(ph)QEICTLKK ddPTM_HeLa_CUDC101_4h_R1 1 MRKMSQEICTLKK 13 3 H3BQL2;A0A1B0GVY7;H3BSY2-2;D6RF30;P0CJ92;H3BSY2;A6NMD2;A6NC78 H3BQL2 GOLGA8T;GOLGA8M;GOLGA8K;GOLGA8H;GOLGA8J;GOLGA8IP Golgin subfamily A member 8M;Golgin subfamily A member 8K;Golgin subfamily A member 8H;Golgin subfamily A member 8J;Putative golgin subfamily A member 8I 1 0 MRKMS(1)QEICTLKK 54.7 0.037018 23826000 8571.3 2864.4 1579.2 1906.9 16244 7444.8 11472 4341.6 5599.3 2586.5 TRUE FALSE FALSE 7566.585207 2952.648769 1664.576329 1984.671624 15045.71248 7302.802844 11914.47888 4835.830195 5368.494484 2571.115383 2.942919348 1.148392168 0.647414091 0.771910758 5.851823136 2.840324823 4.633972852 1.880829708 2.088002164 1 11.32817864 -5.782487675 24.99999856 1.697323029 3.792511867 0.483065502 1.181543347 180.4124934 214283.6059 0.184304832 0.334322589 1.65E-06 5.782487675 2.095188838 ATCAPQHGAPGPGPADAS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ATCAPQHGAPGPGPADASK 19 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 1 0 ATCAPQHGAPGPGPADAS(1)K 67.478 0.010826 5691600 2235.6 1450.8 1795.1 1794.6 1377.7 1617 1562.8 1460.2 1281.4 1375.3 TRUE FALSE FALSE 1973.546357 1495.497428 1892.148536 1867.791545 1276.069816 1586.158419 1623.07772 1626.423266 1228.58015 1367.119654 1.443579829 1.093903832 1.384040182 1.366223899 0.933400242 1.160219161 1.187224333 1.189671482 0.898663219 1 10.4169238 -5.78206561 24.99984391 1.229060066 1.125641896 0.02856474 0.177424356 558.3596197 676754.0345 0.028125287 0.051021226 1.65E-06 5.78206561 -0.103418171 QAGPAPAAATAASK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 QAGPAPAAATAASKK 15 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 0 1 ; QAGPAPAAATAASK(1)K;QAGPAPAAATAASK(1)K 239.61 1.77E-35 18595300 4279.3 5312.2 5082.3 5091.3 4958 4457.9 4619.7 4321.5 4564.4 5383.4 FALSE TRUE FALSE 3777.686941 5475.862585 5357.064511 5298.94522 4592.258218 4372.872985 4797.883376 4813.442092 4376.2535 5351.379297 0.705927712 1.023261907 1.001062383 0.990201764 0.858144781 0.817148765 0.896569484 0.899476906 0.817780474 1 12.38569507 -4.551083435 24.91183104 0.885561162 0.898750538 0 0.099319067 2614.581621 2309332.23 0.017887927 0.066933575 2.81E-05 4.551083435 0.013189376 QAGPASVPLRTEEEFK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 QAGPASVPLRTEEEFKK 17 2 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 1 ; QAGPASVPLRTEEEFK(1)K;QAGPASVPLRTEEEFK(1)K 135.61 0.005242 4615100 1361.74 420.972 771.16 509.36 1455.08 1097.58 1405.69 1255.63 1244.76 531.72 FALSE TRUE FALSE 1202.118901 433.9416483 812.8512422 530.1339024 1347.741647 1076.64549 1459.907934 1398.565844 1193.450466 528.5573058 2.27433977 0.820992622 1.537867764 1.00298283 2.549849624 2.036951298 2.762061782 2.646006078 2.257939589 1 9.045916086 -1 0.284759 1.416514827 12.94113523 0.3451214 0.567499433 39.90762904 0.509392387 0.251592794 233.2848574 0.1 1 11.5246204 AGMSSNQSIS(ph)SPVLDAVPRT(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 4 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMS(0.001)S(0.005)NQS(0.043)IS(0.824)S(0.127)PVLDAVPRT(0.843)PS(0.157)R;AGMSSNQSIS(0.563)S(0.437)PVLDAVPRT(0.883)PS(0.117)R;AGMS(0.001)S(0.002)NQS(0.003)IS(0.688)S(0.315)PVLDAVPRT(0.865)PS(0.126)R;AGMS(0.029)S(0.086)NQS(0.065)IS(0.596)S(0.224)PVLDAVPRT(0.804)PS(0.196)R ;;; 145.22 3.66E-07 276789000 5564.49 5202.49 4611.63 4824.08 6185.9 5257.93 5266.7 5018.7 5581.4 5295 TRUE FALSE FALSE 4912.228917 5362.77255 4860.948667 5020.826834 5729.578481 5157.643746 5469.838383 5590.008522 5351.33233 5263.505105 0.933261927 1.018859571 0.923519322 0.95389417 1.0885481 0.979887669 1.039200737 1.062031557 1.016686072 1 12.36180813 -5.782013716 24.99991288 0.967289843 1.037720912 0.402129197 0.03992978 167.9940852 204129.6827 0.005754674 0.010439323 1.65E-06 5.782013716 0.070431069 RLS(ph)LESEGAGEGAAASPELSALEEAFRR ddPTM_HeLa_CUDC101_4h_R1 1 RLSLESEGAGEGAAASPELSALEEAFRR 28 2 O94811 O94811 TPPP Tubulin polymerization-promoting protein 1 0 RLS(0.923)LES(0.064)EGAGEGAAAS(0.01)PELS(0.002)ALEEAFRR 44.564 0.039793 5668600 346.4 339.98 263.03 278.67 202.99 244.7 233.59 186.97 291.45 268.92 TRUE FALSE FALSE 305.7955171 350.4543808 277.2501974 290.0353671 188.0158321 240.0327552 242.5996445 208.253909 279.4363076 267.3204519 1.143928626 1.310989782 1.037145476 1.084972605 0.703335008 0.897921403 0.907523696 0.779042185 1.04532334 1 8.062426408 -5.781906928 24.68361897 1.08829534 0.833493745 0.666190349 0.097208812 110.2835804 133000.4872 0.015785865 0.028639416 1.65E-06 5.781906928 -0.254801594 SDS(ph)PENKYSDSTGHSK ddPTM_HeLa_CUDC101_4h_R1 1 SDSPENKYSDSTGHSK 16 1 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5;Q9BTA9-3;E9PMZ7;C9JMU2;A0A494C0B7;A0A494C0C1;A0A494C0S5;C9JVK6;C9JD58;J3QTA0 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 0 S(0.012)DS(0.647)PENKY(0.143)S(0.176)DS(0.015)T(0.005)GHS(0.001)K 58.658 0.035552 6993200 2142.4 1002.4 1271 1313.3 3488.3 2133.1 1990.3 2331.3 2447.8 2184.3 TRUE FALSE FALSE 1891.27112 1033.282756 1339.714105 1366.862051 3230.975059 2092.414671 2067.066538 2596.685769 2346.900648 2171.307686 0.871028612 0.475880393 0.61700795 0.62951099 1.48803188 0.963665668 0.951991535 1.195908707 1.080869682 1 11.08434846 -5.781820262 24.99993263 0.852887563 1.122461039 0.363715603 0.226920826 273.5935709 335599.3735 0.035767866 0.064890132 1.65E-06 5.781820262 0.269573477 GPSPAAAS(ph)PEGSPLR ddPTM_HeLa_CUDC101_4h_R1 1 GPSPAAASPEGSPLR 15 0 Q9P107-2;Q9P107 Q9P107-2 GMIP GEM-interacting protein 1 0 GPS(0.015)PAAAS(0.617)PEGS(0.368)PLR 99.451 0.0060828 11746000 706.95 623.1 648.48 642.75 544.76 519.18 512.26 662.93 516.13 694.68 TRUE FALSE FALSE 624.0823927 642.2969724 683.5387903 668.9641232 504.5741401 509.2775065 532.0180398 738.3952715 494.8549029 690.5480125 0.903749459 0.930126452 0.989849769 0.968743825 0.730686543 0.737497607 0.770428747 1.069288823 0.716611871 1 9.431597916 -5.781558617 24.99022859 0.955283904 0.816545102 0.072925286 0.119689122 204.1990081 253636.4669 0.013764324 0.024972904 1.65E-06 5.781558617 -0.138738802 KKEGLDS(ph)DVADS(ph)S(ph)ILTSGFQPVS(ph)IKPSK ddPTM_HeLa_CUDC101_4h_R1 1 KKEGLDSDVADSSILTSGFQPVSIKPSK 28 3 H0Y8R2;Q6ZN44-3;Q6ZN44 H0Y8R2 UNC5A Netrin receptor UNC5A 4 0 KKEGLDS(1)DVADS(0.501)S(0.501)ILT(0.5)S(0.5)GFQPVS(0.537)IKPS(0.462)K 42.106 0.036971 63031000 2152.8 1513.6 1737.8 1383.4 3122.5 2016.1 2037.7 1976.4 2050.9 1988.7 TRUE FALSE FALSE 1900.452047 1560.232222 1831.750725 1439.821032 2892.159396 1977.646252 2116.294772 2201.385387 1966.361034 1976.871124 0.96134342 0.789243266 0.926590865 0.728333281 1.462998453 1.000392098 1.070527434 1.113570511 0.994683472 1 10.94900311 -5.781273341 24.99995673 0.944844165 1.143813475 0.423331031 0.143511217 215.0924179 271115.4625 0.020687373 0.037535104 1.65E-06 5.781273341 0.19896931 EKEIS(ph)DDEAEEEK ddPTM_HeLa_CUDC101_4h_R1 4 EKEISDDEAEEEK 13 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 0 EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK;EKEIS(1)DDEAEEEK ;;; 155.56 0.00051424 794663000 27093.3 19674.5 20351.4 20190 15382.4 17397.9 17207.2 15014.2 21915.7 17799.4 TRUE FALSE FALSE 23917.46444 20280.64802 21451.65824 21013.43547 14247.671 17066.06404 17870.88747 16723.35584 21012.32557 17693.52838 1.351763421 1.146218413 1.212401381 1.187633977 0.805247585 0.964537071 1.010023953 0.945167944 1.187571248 1 14.11093415 -5.781085124 24.98465771 1.173523418 0.939249336 0.628293831 0.093900715 178.6091809 227147.5907 0.020344956 0.036915716 1.66E-06 5.781085124 -0.234274082 VSGS(ph)PEQAVEENLSSYSLDRR ddPTM_HeLa_CUDC101_4h_R1 1 VSGSPEQAVEENLSSYSLDRR 21 1 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 VS(0.431)GS(0.566)PEQAVEENLS(0.002)SY(0.001)S(0.001)LDRR 46.92 0.037459 25052000 863.75 886.95 695.57 761.35 1091.5 1112.3 882.38 604.21 860.46 841.46 TRUE FALSE FALSE 762.5025344 914.2758782 733.1746182 792.4011438 1010.98222 1091.084731 916.4136922 672.9908241 824.9914746 836.4549585 0.911588277 1.093036593 0.876526119 0.947332711 1.208651117 1.304415402 1.095592396 0.804575091 0.986295157 1 9.708144046 -5.780495889 24.9559995 0.96101744 1.117122133 0.197411004 0.130752625 251.618175 329513.4927 0.01928764 0.035002576 1.66E-06 5.780495889 0.156104693 RNVSSFPDDATS(ph)PLQENR ddPTM_HeLa_CUDC101_4h_R1 2 RNVSSFPDDATSPLQENR 18 1 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 RNVSS(0.001)FPDDAT(0.011)S(0.987)PLQENR;RNVSSFPDDAT(0.26)S(0.74)PLQENR ; 170.79 2.42E-12 13648000 2823.29 2132.37 2487.87 2140.32 3135.08 2914.86 2451.34 1827.52 3262.75 2492.75 TRUE FALSE FALSE 2492.348226 2198.065792 2622.371778 2227.611501 2903.811394 2859.263902 2545.889005 2035.55749 3128.258064 2477.923012 1.005821494 0.88705976 1.058294291 0.898983338 1.171873129 1.153895374 1.027428614 0.821477294 1.262451678 1 11.27491565 -5.78023294 24.995654 0.99131571 1.050382042 0 0.132695375 513.1791066 682533.7263 0.014600545 0.026498986 1.66E-06 5.78023294 0.059066331 Y(ph)RT(ph)QMSSLQLK ddPTM_HeLa_CUDC101_4h_R1 1 YRTQMSSLQLK 11 1 Q9C0A1 Q9C0A1 ZFHX2 Zinc finger homeobox protein 2 2 0 Y(0.997)RT(0.994)QMS(0.004)S(0.004)LQLK 72.23 0.0030874 0 1572.3 1015.8 1401.5 1342.2 1212.6 1086.5 971.54 1655.9 1377.4 1353.4 TRUE FALSE FALSE 1387.997377 1047.095594 1477.269329 1396.940717 1123.148914 1065.776823 1009.012623 1844.400963 1320.622989 1345.349917 1.031699902 0.77830725 1.098055837 1.038347496 0.834837762 0.792193027 0.750000138 1.370945164 0.981620449 1 10.39376574 -5.779916273 24.96268252 1.003981107 0.913294357 0.00767009 0.17865448 558.3937038 754400.8913 0.024665105 0.044766772 1.66E-06 5.779916273 -0.09068675 ESQLAHIKDEPPPLS(ph)PAPLTPATPSSLDPFFSR ddPTM_HeLa_CUDC101_4h_R1 2 ESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSR 33 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 ESQLAHIKDEPPPLS(0.793)PAPLT(0.194)PAT(0.009)PS(0.002)S(0.002)LDPFFS(0.001)R;ESQLAHIKDEPPPLS(0.956)PAPLT(0.042)PAT(0.002)PSSLDPFFSR ; 75.261 1.63E-06 208568000 3643.3 3028.83 2155.58 2869.24 4959.8 4058.3 3691.5 3332.9 3424.1 3313.86 TRUE FALSE FALSE 3216.237897 3122.144662 2272.117175 2986.260009 4593.925435 3980.894689 3833.882392 3712.303864 3282.957149 3294.149013 0.976348636 0.947784891 0.689743289 0.906534585 1.394571228 1.208474381 1.163846073 1.126938657 0.996602502 1 11.6856901 -5.77989189 24.99817384 0.955083145 1.218129422 0.641711027 0.109314478 136.9952048 185591.3347 0.017323041 0.031441788 1.66E-06 5.77989189 0.263046277 S(ph)GSLLQVEETEREEGLGAGR ddPTM_HeLa_CUDC101_4h_R1 1 SGSLLQVEETEREEGLGAGR 20 1 Q8WYL5-2;Q8WYL5-5;Q8WYL5-4;Q8WYL5 Q8WYL5-2 SSH1 Protein phosphatase Slingshot homolog 1 1 0 S(0.831)GS(0.15)LLQVEET(0.019)EREEGLGAGR 75.3 0.003468 9031000 482.81 382.11 365.33 411.81 587.41 642.83 486.98 547.99 512.59 359.4 TRUE FALSE FALSE 426.2157437 393.8823562 385.0808449 428.6053918 544.0779346 630.5690888 505.7629817 610.3709665 491.4608232 357.2622728 1.193005184 1.10250196 1.077865966 1.199693963 1.522909011 1.765003295 1.415663002 1.708467457 1.375630344 1 8.480839762 -5.77979799 2.948387031 1.094655811 1.614520065 0.733670299 0.130424722 0.070796324 1.263676442 0.015506125 0.031432612 1.66E-06 5.77979799 0.519864254 MS(ph)GFIYQGK ddPTM_HeLa_CUDC101_4h_R1 2 MSGFIYQGK 9 0 B1ALK7;A0A2R8YG42;Q14155-6;Q14155-1;Q14155-5;Q14155-2;Q14155-3;Q14155;E9PDQ5;E7EUY6;Q15052-2;Q15052;F6SJA5 B1ALK7 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 7;Rho guanine nucleotide exchange factor 6 1 0 MS(1)GFIYQGK;MS(1)GFIYQGK ; 143.24 0.0014302 591900000 2169.77 1572.66 2057.07 1962.38 2704.5 2222.86 2349.1 2152.61 2074.48 2194 TRUE FALSE FALSE 1915.43285 1621.111791 2168.281426 2042.414339 2504.994423 2180.462649 2439.705574 2397.654421 1988.969056 2180.94999 0.878256199 0.743305348 0.994191263 0.936479217 1.148579488 0.999776546 1.11864352 1.099362403 0.911973711 1 11.09074097 -5.779731734 22.37445871 0.928500654 1.086964634 0.564127978 0.076903466 48.63122677 59483.80909 0.012585379 0.022860995 1.66E-06 5.779731734 0.15846398 T(ph)VFSPTLPAAR ddPTM_HeLa_CUDC101_4h_R1 2 TVFSPTLPAAR 11 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 T(0.962)VFS(0.019)PT(0.018)LPAAR;T(0.912)VFS(0.046)PT(0.042)LPAAR ; 185.99 4.36E-10 477650000 8473.5 7449.4 6625.7 5854.7 7422.6 6143.7 5470.2 5245.8 7342.3 7183.5 TRUE FALSE FALSE 7480.249175 7678.907184 6983.905384 6093.479972 6875.049586 6026.519159 5681.187446 5842.960668 7039.647286 7140.772223 1.04754065 1.075360892 0.97803223 0.853336275 0.962787969 0.843959024 0.795598469 0.818253333 0.985838375 1 12.80186438 -5.779712663 0.869502893 1.027045554 0.805450055 0.761410354 0.04628974 0.22240858 0.313513607 0.008325027 0.028428743 1.66E-06 5.779712663 -0.221595499 ATNES(ph)EDEIPQLVPIGK ddPTM_HeLa_CUDC101_4h_R1 8 ATNESEDEIPQLVPIGK 17 0 J3QSV6;O76021-2;O76021 J3QSV6 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AT(0.211)NES(0.789)EDEIPQLVPIGK;ATNES(1)EDEIPQLVPIGK;AT(0.048)NES(0.952)EDEIPQLVPIGK;AT(0.036)NES(0.964)EDEIPQLVPIGK;AT(0.001)NES(0.999)EDEIPQLVPIGK;AT(0.044)NES(0.956)EDEIPQLVPIGK;AT(0.02)NES(0.98)EDEIPQLVPIGK;AT(0.039)NES(0.961)EDEIPQLVPIGK ;;;;;;; 157.11 6.05E-05 3210535100 29843.1 26328.94 24973.46 25693.78 27619.12 27273.98 23220.65 24831.69 28526 27298.5 TRUE FALSE FALSE 26344.93706 27140.10343 26323.60079 26741.68341 25581.71254 26753.77427 24116.27825 27658.42922 27350.14621 27136.12731 0.970843656 1.000146525 0.970057388 0.985464252 0.942717885 0.985909816 0.888714811 1.019247474 1.007886862 1 14.72792722 -5.779269345 23.97855901 0.985674886 0.95602819 0.156831657 0.033120643 188.7118303 253788.1781 0.004332791 0.007867831 1.66E-06 5.779269345 -0.029646696 EIS(ph)DDEAEEEK ddPTM_HeLa_CUDC101_4h_R1 3 EISDDEAEEEK 11 0 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 1 0 EIS(1)DDEAEEEK;EIS(1)DDEAEEEK;EIS(1)DDEAEEEK ;; 198.32 2.71E-16 111218000 9277.7 7355.6 5714.01 6354.57 4457.1 5841.2 4948.37 3942.43 7089.4 4995.39 TRUE FALSE FALSE 8190.18207 7582.217317 6022.926665 6613.736831 4128.308613 5729.788842 5139.230288 4391.220295 6797.171931 4965.677198 1.649358535 1.526925133 1.212911437 1.331890207 0.831368703 1.153878638 1.034950538 0.884314489 1.368830808 1 12.27777476 -5.779264613 24.70827096 1.325905684 0.993026185 0.497599929 0.182064209 212.9000949 295109.0343 0.039037391 0.070873969 1.66E-06 5.779264613 -0.332879499 AELPGSSS(ph)PLLAQPR ddPTM_HeLa_CUDC101_4h_R1 1 AELPGSSSPLLAQPR 15 0 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 0 AELPGS(0.017)S(0.378)S(0.605)PLLAQPR 174.47 4.47E-07 33494000 5177.1 4240 3762.6 3930.2 3712.8 3416.4 3605.7 3574.8 3938.3 3695.7 TRUE FALSE FALSE 4570.248186 4370.629374 3966.017537 4090.490544 3438.914141 3351.237862 3744.773057 3981.740782 3775.961607 3673.717812 1.244038987 1.189701985 1.0795651 1.113447127 0.936085545 0.912219728 1.019341509 1.083845027 1.027831151 1 11.8430251 -5.779187799 21.4442076 1.12104411 0.984717054 0.350816945 0.079753556 44.77281691 54096.19338 0.015414729 0.028017848 1.66E-06 5.779187799 -0.136327055 QAQQERDELADEIANSSGK ddPTM_HeLa_CUDC101_4h_R1 1 QAQQERDELADEIANSSGK 19 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 145.82 6.32E-05 12798000 2459.3 1989.7 1952.6 1684.2 2241.5 1900 2152.1 2366.7 2069.8 2441.7 FALSE FALSE TRUE 2171.024582 2051.000299 2058.163462 1752.888956 2076.149011 1863.760666 2235.107218 2636.115561 1984.481968 2427.17666 0.894465005 0.845014841 0.847966074 0.722192572 0.855376143 0.767871864 0.920867135 1.086083104 0.8176092 1 11.2450634 -8.441080388 0.813600928 0.989890819 0.857600071 0 0.106216562 0.600120704 0.828692622 0.038709372 0.020656426 3.62E-09 8.441080388 -0.132290748 GLEPS(ph)PAAVAALPPEVR ddPTM_HeLa_CUDC101_4h_R1 3 GLEPSPAAVAALPPEVR 17 0 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 0 GLEPS(1)PAAVAALPPEVR;GLEPS(1)PAAVAALPPEVR;GLEPS(1)PAAVAALPPEVR ;; 207.92 1.26E-23 15786100 3762.13 3364.91 2928.66 3071.33 4145.66 3877.41 3620.71 2451.3 4043.58 3525.1 TRUE FALSE FALSE 3321.138824 3468.578889 3086.992218 3196.592113 3839.842921 3803.454864 3760.361998 2730.346084 3876.901921 3504.132548 0.947777739 0.989853791 0.880957605 0.912234931 1.095804131 1.085419804 1.073122077 0.779178883 1.106379929 1 11.77484163 -5.77905836 24.93938471 0.964165627 1.018508372 0.020607305 0.101375975 488.8486878 691956.974 0.013128286 0.023835498 1.66E-06 5.77905836 0.054342745 TSQEELLAEVVQGQS(ph)RTPR ddPTM_HeLa_CUDC101_4h_R1 1 TSQEELLAEVVQGQSRTPR 19 1 H0YJA2;Q6PJT7-5;Q6PJT7-2;Q6PJT7;Q6PJT7-9;G3V5I6;G3V256;Q6PJT7-10;Q6PJT7-4;Q6PJT7-3;Q6PJT7-11;A0A087WTC9 H0YJA2 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 TSQEELLAEVVQGQS(0.587)RT(0.413)PR 69.398 0.008003 7601100 1276.8 1091 1049.8 1052.2 1697.9 1280 1313.1 1270.8 1395.5 1290.3 TRUE FALSE FALSE 1127.13544 1124.612417 1106.555363 1095.113264 1572.6493 1255.586133 1363.746707 1415.462735 1337.976899 1282.625238 0.878772229 0.876805152 0.862726953 0.853806109 1.226117538 0.978918935 1.063246431 1.103566882 1.043154976 1 10.32488399 -5.778827053 24.99951704 0.92369681 1.08269396 0.524994575 0.080662914 154.662608 222369.3821 0.011809125 0.021441946 1.66E-06 5.778827053 0.15899715 SGPPS(ph)PPSTATSFGGPRPR ddPTM_HeLa_CUDC101_4h_R1 2 SGPPSPPSTATSFGGPRPR 19 1 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2;A0A087X0E3 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 SGPPS(0.997)PPS(0.003)TATSFGGPRPR;S(0.016)GPPS(0.926)PPS(0.053)T(0.005)ATSFGGPRPR ; 117.23 5.27E-05 31393000 2845.66 2234.69 2215.57 2397.54 2174.9 2398.84 2054.88 2104.72 2462.57 2222.51 TRUE FALSE FALSE 2512.096049 2303.53815 2335.350416 2495.322044 2014.46196 2353.086124 2134.13741 2344.312817 2361.061822 2209.290412 1.137060133 1.042659733 1.057059046 1.129467648 0.911814015 1.065086831 0.965983195 1.061115734 1.068696904 1 11.10936736 -5.778596044 24.99883812 1.067799166 1.003076333 0.281915672 0.055554992 303.9777014 442922.7705 0.009482646 0.017219186 1.66E-06 5.778596044 -0.064722833 RLNHS(ph)PPQSSSR ddPTM_HeLa_CUDC101_4h_R1 4 RLNHSPPQSSSR 12 1 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 RLNHS(0.953)PPQS(0.006)S(0.02)S(0.02)R;RLNHS(0.989)PPQS(0.006)S(0.003)S(0.002)R;RLNHS(0.722)PPQS(0.082)S(0.071)S(0.126)R;RLNHS(0.992)PPQS(0.002)S(0.005)S(0.001)R ;;; 121.92 0.0016267 286127000 10758.6 7695.8 7171.8 8122 11190.7 9110.1 9089 9305.8 9087.6 8316.7 TRUE FALSE FALSE 9497.493217 7932.898476 7559.529202 8453.250266 10365.18436 8936.340021 9439.565775 10365.13466 8713.005282 8267.231899 1.148811759 0.959559206 0.914396656 1.022500683 1.25376722 1.080934965 1.141804886 1.253761209 1.053920513 1 13.01318864 -5.778491816 24.99675835 1.046707015 1.172396061 0.497513309 0.078030896 227.0757459 332864.4252 0.013722888 0.024918697 1.67E-06 5.778491816 0.125689046 AAPPPPPPPPPLES(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 4 AAPPPPPPPPPLESSPR 17 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 AAPPPPPPPPPLES(0.5)S(0.5)PR;AAPPPPPPPPPLES(0.5)S(0.5)PR;AAPPPPPPPPPLES(0.5)S(0.5)PR;AAPPPPPPPPPLES(0.5)S(0.5)PR ;;; 172.32 4.10E-07 332841000 4028.48 3314.85 3256.41 3213.57 4024.24 4024.54 3390.62 2747.08 3067.21 3260.11 TRUE FALSE FALSE 3556.267681 3416.976599 3432.461375 3344.633275 3727.379833 3947.778605 3521.397349 3059.796483 2940.778306 3240.718721 1.097370055 1.054388515 1.059166707 1.03206528 1.150170735 1.218179961 1.086609994 0.944172187 0.907446329 1 11.66209809 -5.778477898 24.992484 1.047980783 1.107299194 0.131680811 0.08129075 379.2011259 556220.2264 0.010878213 0.019754113 1.67E-06 5.778477898 0.059318411 SLS(ph)PGAASSSSGDGDGKEGLEEPK ddPTM_HeLa_CUDC101_4h_R1 3 SLSPGAASSSSGDGDGKEGLEEPK 24 1 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 S(0.056)LS(0.864)PGAAS(0.056)S(0.01)S(0.01)S(0.004)GDGDGKEGLEEPK;S(0.028)LS(0.961)PGAAS(0.005)S(0.005)S(0.001)SGDGDGKEGLEEPK;S(0.021)LS(0.975)PGAAS(0.001)S(0.001)S(0.001)S(0.001)GDGDGKEGLEEPK ;; 130.48 4.41E-09 78416000 13241.2 9564.4 9990.6 9939.8 9781.9 8383.9 8000.7 6789.1 11345.3 13241.2 TRUE FALSE FALSE 11689.08661 9859.067827 10530.72206 10345.18801 9060.308725 8223.991076 8309.289679 7561.943702 10877.64193 13162.44075 0.888063759 0.749030367 0.800058458 0.785962741 0.688345642 0.624807453 0.631287907 0.57450923 0.826415263 1 13.68413942 -5.778362949 0.23632702 1.04119678 0.40010432 0.751335632 0.062102222 0.714516674 0.067199602 0.036404283 0.14093007 1.67E-06 5.778362949 -0.64109246 SVEST(ph)SPEPSK ddPTM_HeLa_CUDC101_4h_R1 3 SVESTSPEPSK 11 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;P18583-8 P18583-10 SON Protein SON 1 0 SVES(0.012)T(0.494)S(0.494)PEPSK;SVES(0.001)T(0.5)S(0.5)PEPSK;SVES(0.001)T(0.5)S(0.5)PEPSK ;; 213.63 5.04E-23 1371916000 20714.1 19247.5 19798 17966.4 18325.9 18071.5 16487 16406.6 18730.7 18437.9 TRUE FALSE FALSE 18286.0246 19840.49266 20868.33977 18699.14745 16974.03487 17726.81625 17122.90911 18274.26103 17958.61262 18328.23055 0.997697216 1.082509989 1.138589986 1.020237464 0.926114216 0.96718645 0.93423689 0.997055388 0.979833409 1 14.16177989 -5.778342567 24.191713 1.018826307 0.955371589 0.362901285 0.048889732 179.8554774 257407.647 0.008021084 0.014570193 1.67E-06 5.778342567 -0.063454718 S(ph)QENILQGFSTSHK ddPTM_HeLa_CUDC101_4h_R1 2 SQENILQGFSTSHK 14 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 S(1)QENILQGFSTSHK;S(1)QENILQGFSTSHK ; 84.842 0.0021729 3704300 5114.6 4642.9 4007.44 4115.6 8578 7382.3 5911 5056.3 6105.9 4577.6 TRUE FALSE FALSE 4515.074341 4785.942246 4224.094328 4283.451957 7945.21803 7241.494927 6138.98925 5631.888754 5854.212218 4550.372232 0.992242856 1.051769394 0.928296437 0.941341002 1.746058921 1.591407155 1.349118036 1.237676495 1.286534798 1 12.15176885 -5.777979199 24.99985976 0.991763658 1.479521938 0.647535949 0.160057559 82.87013163 125257.7242 0.019472988 0.035369629 1.67E-06 5.777979199 0.48775828 SLSLASTSRDS(ph)PGAVAAPLISGVEIK ddPTM_HeLa_CUDC101_4h_R1 1 SLSLASTSRDSPGAVAAPLISGVEIK 26 1 Q5THJ4-2;Q5THJ4;H3BLS7;A0A2R8YD87 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 SLSLAS(0.004)T(0.004)S(0.104)RDS(0.887)PGAVAAPLISGVEIK 121.56 2.62E-10 27438000 1378.4 1387.7 1501.7 1307.6 1816.7 1646.1 1315.8 1389.9 1795.6 1707.9 TRUE FALSE FALSE 1216.826042 1430.453392 1582.886444 1360.92958 1682.68566 1614.703385 1366.550847 1548.120598 1721.584608 1697.741335 0.716732294 0.842562623 0.932348416 0.801611855 0.991131939 0.951089163 0.804922881 0.911870711 1.014044114 1 10.72940095 -5.777845465 24.98736709 0.86261795 0.909504055 0 0.095607483 756.4724384 1152148.024 0.017183186 0.031211409 1.67E-06 5.777845465 0.046886105 SPSVPKS(ph)PTPK ddPTM_HeLa_CUDC101_4h_R1 2 SPSVPKSPTPK 11 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 1 0 SPS(0.002)VPKS(0.966)PT(0.032)PK;SPS(0.002)VPKS(0.983)PT(0.015)PK ; 84.297 0.018475 1035460000 17439.5 13155.6 14432.2 14371.4 13330.7 12400.4 12396 12300.8 15066.9 15268.2 TRUE FALSE FALSE 15395.26825 13560.90844 15212.44839 14957.52781 12347.32082 12163.88303 12874.11787 13701.07335 14445.836 15177.38407 1.014355845 0.893494451 1.002310301 0.985514219 0.813534188 0.801447929 0.848243532 0.902729567 0.951800122 1 13.88963553 -5.777469643 12.72034336 0.995806838 0.839109626 0.675436624 0.043723745 0.290706575 230.0482375 0.006331339 0.011624492 1.67E-06 5.777469643 -0.156697212 S(ph)PAGGESATVAAK ddPTM_HeLa_CUDC101_4h_R1 2 SPAGGESATVAAK 13 0 Q147X3 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 S(1)PAGGESATVAAK;S(1)PAGGESATVAAK ; 177.21 1.66E-07 61724000 3999.6 2752.4 2670.5 3042.4 2367 2443.7 2676.1 2516.8 3115.5 2554.9 TRUE FALSE FALSE 3530.772951 2837.198182 2814.875308 3166.482222 2192.391126 2397.090494 2779.318073 2803.302339 2987.077771 2539.703341 1.390230463 1.117137634 1.108348074 1.246792163 0.863246935 0.943846651 1.094347528 1.103791255 1.176152239 1 11.31044427 -5.777030377 24.99705156 1.180551412 1.003849344 0.348507946 0.114784009 276.2613624 442929.6886 0.023742334 0.043144465 1.67E-06 5.777030377 -0.176702068 ETIELS(ph)PTGRPK ddPTM_HeLa_CUDC101_4h_R1 2 ETIELSPTGRPK 12 1 F6XU50;A0A0B4J1V9;Q9NRZ9-6;Q9NRZ9-5;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9;A0A087WSW7;Q9NRZ9-4 F6XU50 HELLS Lymphoid-specific helicase 1 0 ETIELS(0.959)PT(0.041)GRPK;ETIELS(0.958)PT(0.042)GRPK ; 186.13 4.83E-10 64090000 6470.7 5082.3 5010.1 5282.5 5534 5438.8 4044 1722.83 5021.3 5783.9 TRUE FALSE FALSE 5712.214355 5238.879639 5280.961161 5497.943183 5125.767845 5335.063952 4199.978435 1918.950003 4814.319889 5749.497106 0.993515476 0.911189195 0.918508361 0.956247665 0.891515858 0.927918365 0.730494921 0.333759626 0.837346258 1 12.48922006 -4.197900847 1.312806709 0.976804148 3.98E-18 0.902727398 0.058478608 0.231042413 0.305584246 0.006637961 0.312621451 6.34E-05 4.197900847 -0.976804148 down QATINIGTIGHVAHGK ddPTM_HeLa_CUDC101_4h_R1 2 QATINIGTIGHVAHGK 16 0 H7BZU1;Q2VIR3-2;Q2VIR3;P41091 H7BZU1 EIF2S3;EIF2S3L Putative eukaryotic translation initiation factor 2 subunit 3-like protein;Eukaryotic translation initiation factor 2 subunit 3 0 0 ; ; 55.335 0.027698 6228700 8595.9 7346.7 6863 6054.7 8100.8 7573.3 6144.3 7479 7862.3 7213.7 FALSE FALSE TRUE 7588.301633 7573.043119 7234.034539 6301.636837 7503.220123 7428.85192 6381.287709 8330.379129 7538.212666 7170.792592 1.058223556 1.056095686 1.00881938 0.878792233 1.046358548 1.03598756 0.889899914 1.161709675 1.051238419 1 12.80791687 -6.530720192 24.56944392 1.030505387 0.994905075 0.043365734 0.077104396 392.2679844 1229078.678 0.011348789 0.016068505 2.95E-07 6.530720192 -0.035600312 WDQTADQT(ph)PGATPK ddPTM_HeLa_CUDC101_4h_R1 3 WDQTADQTPGATPK 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 WDQT(0.009)ADQT(0.99)PGAT(0.001)PK;WDQTADQT(0.783)PGAT(0.217)PK;WDQT(0.002)ADQT(0.993)PGAT(0.006)PK ;; 161.24 0.0002038 421398000 7521 6047.9 6511 6339.3 8040.1 7192.3 6755.7 6180.7 6428.4 7274 TRUE FALSE FALSE 6639.399781 6234.22863 6863.004355 6597.844055 7446.997841 7055.118861 7016.269612 6884.285905 6163.418631 7230.733924 0.918219347 0.862184765 0.949143535 0.91247225 1.029908986 0.975712692 0.970339897 0.952086742 0.852391845 1 12.81992637 -5.776770674 24.99629241 0.948139135 0.980728417 0.145948296 0.049785275 458.6903899 747853.4039 0.007242493 0.013163969 1.67E-06 5.776770674 0.032589282 KAEQGS(ph)EEEGEGEEEEEEGGESKADDPYAHLSK ddPTM_HeLa_CUDC101_4h_R1 1 KAEQGSEEEGEGEEEEEEGGESKADDPYAHLSK 33 2 Q8NE71;Q5STZ8 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 KAEQGS(1)EEEGEGEEEEEEGGESKADDPYAHLSK 59.732 0.00035679 23466000 854.88 422.4 520.61 639.95 1507.2 961.77 1146.2 1033.6 665.82 834.98 TRUE FALSE FALSE 754.6722623 435.4136433 548.7557514 666.0499271 1396.016859 943.4258397 1190.409318 1151.260846 638.3746178 830.0135018 0.909228899 0.524586217 0.661140753 0.802456738 1.681920662 1.136639148 1.434204763 1.387038697 0.769113534 1 9.696990995 -5.776477896 24.99993362 0.885758262 1.392161003 0.708072441 0.191335255 123.0411891 204542.8196 0.030396537 0.055253664 1.67E-06 5.776477896 0.506402741 AIEQADLLQEEDES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 AIEQADLLQEEDESPR 16 0 A0A2R8YGH5;H7C1E4;P61966 A0A2R8YGH5 AP1S1 AP-1 complex subunit sigma-1A 1 0 AIEQADLLQEEDES(1)PR;AIEQADLLQEEDES(1)PR ; 256.67 9.87E-70 9243100 3338.5 2288.9 2210.8 2514.1 2176.5 2590.5 1965.92 2063.4 2757.7 2165.48 TRUE FALSE FALSE 2947.166091 2359.418296 2330.322535 2616.635865 2015.943931 2541.090529 2041.746193 2298.289115 2644.026439 2152.599629 1.369119483 1.096078558 1.082561989 1.215570155 0.936515971 1.180475224 0.94850253 1.067680717 1.228294572 1 11.0718643 -5.776444667 24.96793717 1.166779654 1.037750054 0.247974846 0.112468903 346.3793827 576355.384 0.022172205 0.040306108 1.67E-06 5.776444667 -0.1290296 TRDDGDEEGLLT(ph)HSEEELEHSQDT(ph)DADDGALQ ddPTM_HeLa_CUDC101_4h_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9-2;Q9UKM9 Q9UKM9-2 RALY RNA-binding protein Raly 2 0 TRDDGDEEGLLT(0.415)HS(0.415)EEELEHS(0.415)QDT(0.754)DADDGALQ 54.66 0.0024357 92666000 948.02 746.56 608.74 659.27 1024.9 882.67 849.64 583.68 1236.7 725.79 TRUE FALSE FALSE 836.8945327 769.5606287 641.6503257 686.1578802 949.2951689 865.8345404 882.4108994 650.1237719 1185.722703 721.4729688 1.159980441 1.06665206 0.889361561 0.951051404 1.315773716 1.200092835 1.223068552 0.901106209 1.643474882 1 9.494801533 -5.776352492 24.99985937 1.05326786 1.167377577 0 0.222969883 345.9009584 579856.9251 0.019235481 0.034971929 1.67E-06 5.776352492 0.114109717 VFS(ph)LMDPNSPERVTFVS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 VFSLMDPNSPERVTFVSR 18 1 Q7L5D6-2;Q7L5D6;C9JPA8;C9JY46;C9JHN8 Q7L5D6-2 GET4 Golgi to ER traffic protein 4 homolog 2 0 VFS(1)LMDPNS(0.006)PERVT(0.09)FVS(0.905)R 60.207 0.029038 16488000 809.7 934.49 906.41 946.73 2157.8 1971.9 1737.5 865.59 1251.7 1289.9 TRUE FALSE FALSE 714.7881934 963.2805293 955.4132663 985.3417415 1998.623393 1934.289293 1804.515957 964.1252668 1200.104396 1282.227617 0.557458117 0.751255484 0.745119863 0.768460863 1.558711859 1.508538162 1.40732888 0.751914289 0.935952697 1 10.32443667 -5.776323465 24.8585426 0.777606814 1.328239019 0.534311499 0.234278063 131.5595105 219723.0614 0.037871767 0.068853201 1.67E-06 5.776323465 0.550632205 LNAS(ph)PAAR ddPTM_HeLa_CUDC101_4h_R1 2 LNASPAAR 8 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 LNAS(1)PAAR;LNAS(1)PAAR ; 88.134 0.031794 234993000 12521.3 9553.9 9755.4 10339.3 8520.2 9362.2 8778.9 7910.3 11332.7 10247.5 TRUE FALSE FALSE 11053.5722 9848.244335 10282.80643 10760.98134 7891.681821 9183.631633 9117.505114 8810.776577 10865.56131 10186.54741 1.085114686 0.96678923 1.009449622 1.056391426 0.774716054 0.901545073 0.895053519 0.864942381 1.066657904 1 13.31437753 -5.776037809 24.99989357 1.033462388 0.864669258 0.772224404 0.045620186 87.84740405 150439.1449 0.007280355 0.013238161 1.67E-06 5.776037809 -0.16879313 QDDDWIVDDDGIGYVEDGR ddPTM_HeLa_CUDC101_4h_R1 1 QDDDWIVDDDGIGYVEDGR 19 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 0 0 223.68 1.50E-32 6947800 1434.4 952.22 809.5 888.16 833.51 945.97 693.11 530.92 919.52 942.64 FALSE FALSE TRUE 1266.261806 981.5567695 853.2640186 924.3830038 772.0236279 927.9271983 719.8434849 591.3577867 881.6169964 937.0331354 1.351352219 1.047515539 0.910601756 0.986499803 0.823902164 0.990282161 0.768215613 0.631095918 0.940860001 1 9.871956255 -6.186381771 0.928896275 1.161149464 0.783228134 0.393478679 0.14106354 0.359991138 0.612081597 0.029689168 0.068843976 6.51E-07 6.186381771 -0.37792133 KRLS(ph)QSDEDVIR ddPTM_HeLa_CUDC101_4h_R1 1 KRLSQSDEDVIR 12 2 H0Y917;A0A499FIZ0;Q9H7D7-3;Q9H7D7-4;Q9H7D7-2;Q9H7D7 H0Y917 WDR26 WD repeat-containing protein 26 1 0 KRLS(0.996)QS(0.004)DEDVIR 75.483 0.037214 55743000 3292.1 2809.3 2780.2 2683.7 3831.9 3958.7 2710 2810.5 3128.9 2616.6 TRUE FALSE FALSE 2906.205028 2895.851203 2930.506022 2793.152886 3549.228371 3883.194393 2814.525608 3130.43596 2999.925418 2601.036347 1.117325804 1.113345151 1.126668616 1.073861536 1.364543935 1.492941226 1.082078538 1.203534108 1.153357746 1 11.34487084 -5.775959164 24.30322363 1.068614634 1.286022349 0.406489198 0.108184666 111.4742166 186585.7094 0.016604982 0.030203966 1.68E-06 5.775959164 0.217407715 KKEEPSQNDIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 5 KKEEPSQNDISPK 13 2 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK;KKEEPSQNDIS(1)PK ;;;; 102.03 0.0020402 3544013000 30105.3 30322.8 33078.4 30283.8 29393.7 30093.7 27723.1 25927.9 27954.4 34274.6 TRUE FALSE FALSE 26576.40237 31257.00953 34866.71836 31518.90426 27225.38531 29519.71281 28792.38925 28879.42733 26802.1078 34070.73315 0.780036116 0.917415231 1.023362726 0.925102026 0.799084222 0.86642435 0.845076891 0.84763152 0.78666073 1 15.05624537 -5.775852634 24.63045408 0.907897253 0.841868007 0.156727527 0.074649544 351.5257802 600713.9793 0.013602771 0.024742463 1.68E-06 5.775852634 -0.066029247 S(ph)FS(ph)FNPHPGY(ph)LTPSMK ddPTM_HeLa_CUDC101_4h_R1 2 SFSFNPHPGYLTPSMK 16 0 Q9ULE4 Q9ULE4 FAM184B Protein FAM184B 3 0 S(1)FS(1)FNPHPGY(1)LTPS(0.001)MK;S(1)FS(1)FNPHPGY(0.998)LT(0.001)PS(0.001)MK ; 72.417 0.001858 0 1038.74 855.44 1083.25 937.99 1355.97 940.48 1014.47 1289.09 1027.03 1233.97 TRUE FALSE FALSE 916.9804718 881.7950925 1141.813772 976.2452865 1255.942795 922.5419109 1053.598448 1435.834795 984.6953887 1226.630292 0.747560596 0.718876012 0.930854047 0.795875736 1.023896771 0.752094512 0.858937249 1.170552207 0.802764611 1 10.26048477 -5.775542276 24.99805446 0.863388305 0.930533886 0.135168734 0.130015215 647.7799645 1148220.595 0.021507312 0.039120598 1.68E-06 5.775542276 0.067145582 QDEDYDEQVEESLQDEDDNDVYILTK ddPTM_HeLa_CUDC101_4h_R1 1 QDEDYDEQVEESLQDEDDNDVYILTK 26 0 H0Y8C6;O00410-2;O00410;O00410-3 H0Y8C6 IPO5 Importin-5 0 0 69.444 0.00037691 3132700 3048.1 2358.4 2450.9 2392.1 2719.3 2597.3 2702.4 2328.9 2762.2 1760.7 FALSE FALSE TRUE 2690.806339 2431.059509 2583.403068 2489.660178 2518.702657 2547.76083 2806.632473 2594.012562 2648.340947 1750.227278 1.537403955 1.388996469 1.476038626 1.422478217 1.439071764 1.455674278 1.603581722 1.482100408 1.513141167 1 10.77332656 -9.335339588 0.730676932 0.948446613 1.481480457 0 0.168799159 0.205148736 0.165552319 0.068624981 0.012578828 4.62E-10 9.335339588 0.533033843 QDEHGFISR ddPTM_HeLa_CUDC101_4h_R1 2 QDEHGFISR 9 0 E9PJL7;P02511;E9PNH7;A0A024R3B9 E9PJL7 CRYAB Alpha-crystallin B chain 0 0 ; ; 104.43 0.012562 12728300 8076.1 7431.7 7418.8 6794.4 7696.3 7225.1 6736.9 7670.5 8251.3 7726.3 FALSE FALSE TRUE 7129.431801 7660.661868 7819.882769 7071.505 7128.559282 7087.293255 6996.74449 8543.678715 7911.177922 7680.343624 0.928269899 0.997437386 1.018168347 0.920727684 0.928156295 0.922783355 0.910993678 1.112408394 1.030055204 1 12.90695514 -6.226190084 24.98680188 0.971661679 0.952618988 0.008226483 0.062204449 2484.059111 1760850.433 0.009031674 0.014976771 5.94E-07 6.226190084 -0.019042691 QDEHGYISR ddPTM_HeLa_CUDC101_4h_R1 4 QDEHGYISR 9 0 P04792 P04792 HSPB1 Heat shock protein beta-1 0 0 ;;; ;;; 139.15 0.0018286 602827000 29085.2 23629.5 24646.8 23507.6 26758.8 24606.3 23601.6 24365.5 26797.6 26045.4 FALSE FALSE TRUE 25675.87695 24357.49689 25979.28056 24466.34154 24784.85664 24136.97582 24511.92162 27139.17003 25692.99159 25890.4808 0.99171109 0.94078967 1.003429823 0.944993711 0.957296113 0.932272213 0.946754207 1.048229666 0.99237213 1 14.66013414 -7.439315468 8.70092838 0.99636187 0.965603088 0.122410773 0.032959254 0.475993171 46.16783233 0.005322759 0.006068757 3.64E-08 7.439315468 -0.030758782 QDENDDDDDWNPCK ddPTM_HeLa_CUDC101_4h_R1 3 QDENDDDDDWNPCK 14 0 Q14974;Q14974-2 Q14974 KPNB1 Importin subunit beta-1 0 0 ;; ;; 318.91 8.21E-166 367844000 16692.9 14477.5 15435.5 15132.2 17400.5 15635.9 15341.6 13972.7 15130.7 3079.27 FALSE FALSE TRUE 14736.18357 14923.53461 16269.98982 15749.35652 16116.89978 15337.67126 15933.33065 15563.29569 14507.00614 3060.954365 4.814244778 4.875451521 5.31533237 5.145243818 5.265318544 5.010748097 5.205347336 5.084458581 4.739373545 1 11.57976582 -9.092466828 0.548121988 0.419238531 5.231477812 0.110890812 1.158761483 0.078383302 0.036338036 0.192724409 0.038875572 8.08E-10 9.092466828 4.812239281 HGS(ph)FNTVQASER ddPTM_HeLa_CUDC101_4h_R1 3 HGSFNTVQASER 12 0 F8VSE7;Q96AV8-2;Q96AV8-3;Q96AV8 F8VSE7 E2F7 Transcription factor E2F7 1 0 HGS(1)FNTVQASER;HGS(0.992)FNT(0.008)VQASER;HGS(0.994)FNT(0.006)VQASER ;; 109.48 0.0037742 28766700 5327.81 4329.63 4489.43 4614.73 6255.66 5620.41 4609.87 5539.52 4651.43 5088.47 TRUE FALSE FALSE 4703.292188 4463.020768 4732.142166 4802.938636 5794.192425 5513.210043 4787.67423 6170.116565 4459.696087 5058.203554 0.929834503 0.882333168 0.935538105 0.949534471 1.145504004 1.089954167 0.946516719 1.219823698 0.881675883 1 12.30440938 -5.775496361 24.8850225 0.955356436 1.088704757 0.545632998 0.073803551 147.7632429 261584.7208 0.010296651 0.018731276 1.68E-06 5.775496361 0.133348321 GKAS(ph)PFEEDQNR ddPTM_HeLa_CUDC101_4h_R1 4 GKASPFEEDQNR 12 1 C9JW01;Q8TB72-2;Q8TB72-3;Q8TB72;A0A0A0MR59;Q8TB72-4;A0A0C4DG68 C9JW01 PUM2 Pumilio homolog 2 1 0 GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR ;;; 74.649 0.026043 559392000 13614.5 12230.1 12392.6 12379.4 12182.9 12366.4 11138.3 10972.8 12396.8 13350.2 TRUE FALSE FALSE 12018.62895 12606.89488 13062.58144 12884.28544 11284.19174 12130.53152 11567.90796 12221.8992 11885.79866 13270.79242 0.905645162 0.94997303 0.984310585 0.970875366 0.850302784 0.914077407 0.87168178 0.920962277 0.895635941 1 13.6959669 -5.775488225 24.9999734 0.957320285 0.889773706 0.412794124 0.035653483 175.6287876 312532.0204 0.005874716 0.010686738 1.68E-06 5.775488225 -0.067546579 QDILTQESR ddPTM_HeLa_CUDC101_4h_R1 1 QDILTQESR 9 0 A0A088AWL3;O75376;O75376-2 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 0 0 157.33 0.00052267 35187000 2201.8 1831 1585 1616.8 1708.6 1379 1400 1592.9 1714.1 1633.2 FALSE FALSE TRUE 1943.708342 1887.41094 1670.689894 1682.740092 1582.559982 1352.697873 1453.998469 1774.229297 1643.444072 1623.485654 1.197243928 1.162567058 1.029075859 1.036498283 0.974791479 0.833205929 0.895602906 1.092851848 1.01229356 1 10.66487892 -5.990578854 1.767746278 1.098671406 0.934845896 0.34356547 0.085035445 0.299387308 1.866999819 0.015599789 0.031662822 1.02E-06 5.990578854 -0.16382551 LDPPPS(ph)PHSNR ddPTM_HeLa_CUDC101_4h_R1 2 LDPPPSPHSNR 11 0 Q96P47;Q96P47-2;Q96P47-4;H0Y873 Q96P47 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" 1 0 LDPPPS(0.908)PHS(0.092)NR;LDPPPS(0.988)PHS(0.012)NR ; 81.185 0.02389 51078000 15558.9 13287.4 15093.9 14169.1 14347.4 12877.6 12769 14951.9 14502.2 15063.9 TRUE FALSE FALSE 13735.10933 13696.76904 15909.92189 14746.97714 13289.02089 12631.98124 13261.50461 16653.96386 13904.41318 14974.29925 0.917245548 0.914685142 1.062481898 0.984819182 0.887455277 0.843577454 0.88561771 1.11216983 0.928551844 1 13.87020087 -5.775191368 24.98278203 0.966115533 0.922546848 0.041353319 0.078750922 539.1882905 979525.1497 0.011736951 0.021359619 1.68E-06 5.775191368 -0.043568684 GWVT(ph)CS(ph)S(ph)T(ph)DNT(ph)DLAFKK ddPTM_HeLa_CUDC101_4h_R1 1 GWVTCSSTDNTDLAFKK 17 1 Q9Y3M8-3;Q9Y3M8-4;Q9Y3M8-2;Q9Y3M8 Q9Y3M8-3 STARD13 StAR-related lipid transfer protein 13 5 0 GWVT(1)CS(1)S(1)T(1)DNT(1)DLAFKK 41.711 0.0032753 0 83.376 145.04 225.73 184.29 384.67 317.88 299.67 231.52 260.2 317.9 TRUE FALSE FALSE 73.60279167 149.5085105 237.9336466 191.8061428 356.2936605 311.8169686 311.2283723 257.875301 249.4744459 316.0091167 0.232913507 0.473114548 0.752932856 0.606963953 1.127479056 0.986734091 0.984871499 0.816037536 0.789453319 1 8.30382237 -5.775079799 24.62342483 0.623281723 0.979783712 0.396087792 0.202544782 207.3073217 374227.3759 0.0441528 0.080358748 1.68E-06 5.775079799 0.356501988 LGEVTGSPS(ph)PPPR ddPTM_HeLa_CUDC101_4h_R1 2 LGEVTGSPSPPPR 13 0 O94875-12;O94875-4;O94875-10;O94875-5;O94875-3;H7BXR3;H7BZX1 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 LGEVTGS(0.002)PS(0.998)PPPR;LGEVTGS(0.004)PS(0.996)PPPR ; 127.78 0.0013939 40020000 4580.6 4412.1 4303.7 4212.7 6065.3 5602.9 4613.5 4763 5756.2 4702.2 TRUE FALSE FALSE 4043.669012 4548.031571 4536.37104 4384.512115 5617.874903 5496.034018 4791.44424 5305.200667 5518.927 4674.231105 0.865098221 0.973001007 0.970506365 0.938017829 1.201882144 1.175815636 1.025076453 1.134988953 1.180713336 1 12.19051335 -5.774910683 24.90456447 0.940830209 1.129584396 0.304863383 0.093284128 99.53684077 184014.952 0.009830666 0.017891041 1.68E-06 5.774910683 0.188754188 (ac)NTGPY(ph)YFVK ddPTM_HeLa_CUDC101_4h_R1 1 NTGPYYFVK 9 0 X6RLL4 X6RLL4 RPP40 1 0 NT(0.078)GPY(0.461)Y(0.461)FVK 64.836 0.031764 13338000 3421.9 3149.5 2975.5 3080.9 2593.4 2723.2 2253.7 2705.1 3247.3 3502.7 TRUE FALSE FALSE 3020.790069 3246.532362 3136.36453 3206.552419 2402.090049 2671.259497 2340.625964 3013.03765 3113.44492 3481.865785 0.867577976 0.93241169 0.900771231 0.920929357 0.689885882 0.767191978 0.672233253 0.865351463 0.894188666 1 11.76564488 -5.774606191 24.01687479 0.931498438 0.744529515 0.666111384 0.058780285 63.9440033 116636.9915 0.009660005 0.017594495 1.68E-06 5.774606191 -0.186968923 QDLPALEEK(ac)PR ddPTM_HeLa_CUDC101_4h_R1 1 QDLPALEEKPR 11 1 A0A087WYC1;P34932;A0A087WTS8 A0A087WYC1 HSPA4 Heat shock 70 kDa protein 4 0 1 QDLPALEEK(1)PR 101.39 0.010777 1160200 700.04 348.25 282.22 203.05 522.58 345.78 607.8 579.53 641.54 460.39 FALSE TRUE FALSE 617.9823724 358.9791697 297.4776669 211.3312567 484.0303145 339.1848226 631.2430496 645.5013527 615.0954497 457.6515798 1.350333747 0.784394036 0.650009046 0.461773248 1.057639339 0.741142034 1.379309233 1.4104646 1.344025623 1 8.838105851 -7.25355059 24.88667779 1.165435381 0.913233369 0.167847085 0.299681126 940.7465057 2967764.51 0.054285071 0.065835607 5.58E-08 7.25355059 -0.252202012 QDLPSLDEK(ac)PR ddPTM_HeLa_CUDC101_4h_R1 1 QDLPSLDEKPR 11 1 Q92598-2;Q92598-3;Q92598;Q92598-4 Q92598-2 HSPH1 Heat shock protein 105 kDa 0 1 QDLPSLDEK(1)PR 98.156 0.013344 710460 671.15 308.48 327.59 279.28 603.35 566.95 728.33 423.84 537.69 558.78 FALSE TRUE FALSE 592.4788144 317.9839032 345.3005063 290.6702456 558.8420725 556.1363734 756.4219321 472.0882324 515.5261906 555.4563517 1.066652335 0.57247325 0.621651918 0.523299886 1.006095386 1.001224258 1.361802651 0.849910584 0.928112873 1 9.117529737 IPVEGPLSPS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 IPVEGPLSPSR 11 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 IPVEGPLS(0.291)PS(0.709)R;IPVEGPLS(0.316)PS(0.684)R ; 120.59 0.0041147 23784000 2088.76 1965.36 1432.81 1629.36 1155.08 1236.21 1103.96 1354.47 1602.28 1569.5 TRUE FALSE FALSE 1843.918719 2025.910412 1510.272043 1695.812343 1069.87205 1212.631354 1146.540107 1508.65739 1536.23334 1560.164544 1.181874518 1.298523556 0.968021 1.086944547 0.685743086 0.777245809 0.734884094 0.966986076 0.984661103 1 10.60748248 -5.774334986 24.85653962 1.09584906 0.786193381 0.612905669 0.114863145 104.7477785 201903.532 0.017619663 0.032086648 1.68E-06 5.774334986 -0.309655679 QDPSVLHTEEMR ddPTM_HeLa_CUDC101_4h_R1 2 QDPSVLHTEEMR 12 0 P50502;Q3KNR6;Q8NFI4;F8WAQ7 P50502 ST13;ST13P5 Hsc70-interacting protein;Putative protein FAM10A5 0 0 ; ; 208.08 2.30E-23 26305000 9027.9 6846.7 6386.8 6012.2 9097.1 8072.3 6650.6 7455.4 8013.8 7551.3 FALSE FALSE TRUE 7969.663247 7057.638712 6732.089727 6257.403503 8426.025057 7918.334327 6907.11587 8304.0926 7683.467772 7506.384532 1.061717957 0.940218115 0.896848503 0.833610838 1.122514444 1.054879922 0.920165473 1.106270611 1.023591016 1 12.87390248 -4.21507308 22.04278177 1.004395124 1.10627225 0.118235607 0.08492436 14506.20144 6895563.09 0.012221251 7.683752184 6.09E-05 4.21507308 0.101877126 KEEPS(ph)QNDISPK ddPTM_HeLa_CUDC101_4h_R1 1 KEEPSQNDISPK 12 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 KEEPS(0.619)QNDIS(0.381)PK 129.17 0.0037144 28467000 3590.8 3627.3 4148 3856.4 3049.4 3388.3 3316.1 2950.5 3465.4 4246.3 TRUE FALSE FALSE 3169.891867 3739.052814 4372.253427 4013.680661 2824.451837 3323.673823 3444.003088 3286.372994 3322.554745 4221.042819 0.750973635 0.885812576 1.035823045 0.950874188 0.669136031 0.787405853 0.815912853 0.778568978 0.787140735 1 12.04338375 -5.774225185 24.98959367 0.897014385 0.768313545 0.368988379 0.088809892 250.5240785 489644.3182 0.016481703 0.030015999 1.68E-06 5.774225185 -0.128700841 IEPIPGES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 IEPIPGESPK 10 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 IEPIPGES(1)PK;IEPIPGES(1)PK;IEPIPGES(1)PK;IEPIPGES(1)PK ;;; 193.15 5.98E-13 189513000 27939.8 25502.4 27318.1 25666.6 22816.7 23299.7 21656 23693.1 24948.2 25502 TRUE FALSE FALSE 24664.739 26288.09872 28794.99912 26713.39489 21133.5575 22855.29704 22491.27917 26390.22673 23919.82464 25350.31297 0.972955996 1.036993064 1.135883378 1.053769826 0.833660615 0.901578496 0.887218994 1.041021733 0.943571177 1 14.62971594 -5.774056553 24.99998256 1.007625482 0.912802629 0.353206926 0.069490321 216.0012276 427990.2178 0.010459439 0.01905006 1.68E-06 5.774056553 -0.094822852 SSS(ph)TSDILEPFTVER ddPTM_HeLa_CUDC101_4h_R1 3 SSSTSDILEPFTVER 15 0 A0A1B0GUI1;Q6GYQ0-3;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 S(0.003)S(0.053)S(0.89)T(0.053)S(0.002)DILEPFTVER;SSS(0.993)T(0.007)SDILEPFTVER;S(0.004)S(0.004)S(0.989)T(0.004)SDILEPFTVER ;; 351.03 8.51E-218 255246400 8083.43 5732.03 6093.03 6307.79 7599.94 6671.85 7108.5 5883.27 6063.59 6368.8 TRUE FALSE FALSE 7135.902589 5908.62705 6422.437632 6565.048941 7039.307567 6544.595577 7382.677226 6552.997676 5813.646254 6330.918094 1.127151305 0.933297029 1.014455966 1.036982132 1.11189364 1.033751421 1.166130586 1.035078574 0.91829434 1 12.62819902 -5.774047469 24.43976964 1.045639203 1.088603193 0.106826398 0.071441251 351.8022255 681940.2424 0.010091869 0.018384096 1.68E-06 5.774047469 0.04296399 ESVNS(ph)PVFGK ddPTM_HeLa_CUDC101_4h_R1 2 ESVNSPVFGK 10 0 Q9UPS8;E7ESJ3;Q9UPS8-2 Q9UPS8 ANKRD26 Ankyrin repeat domain-containing protein 26 1 0 ES(0.012)VNS(0.988)PVFGK;ES(0.008)VNS(0.992)PVFGK ; 169.09 3.88E-07 144505000 7948.8 7083.5 6767.5 7714.5 6718.5 6746.6 6792 7609.2 7312.7 7456.9 TRUE FALSE FALSE 7017.053714 7301.734239 7133.371521 8029.130655 6222.88964 6617.919846 7053.969715 8475.400571 7011.267411 7412.546027 0.94664555 0.985050779 0.962337569 1.083181221 0.839507723 0.892799832 0.951625756 1.143385895 0.945864941 1 12.85575344 -5.773970327 24.99752188 0.980806583 0.951884478 0.027383928 0.08147906 791.6900759 1579312.558 0.01173711 0.021383106 1.68E-06 5.773970327 -0.028922104 S(ph)PLAQMEEERR ddPTM_HeLa_CUDC101_4h_R1 5 SPLAQMEEERR 11 1 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;A0A0U1RRM2 G3V1Q4 7-Sep Septin-7 1 0 S(1)PLAQMEEERR;S(1)PLAQMEEERR;S(1)PLAQMEEERR;S(1)PLAQMEEERR;S(1)PLAQMEEERR ;;;; 132.51 0.00096789 308304500 7202.63 5727.35 6728.15 5558.16 8406.91 8427.85 5798.41 5425.93 7884.96 6163.65 TRUE FALSE FALSE 6358.34863 5903.802865 7091.894141 5784.845789 7786.748998 8267.102803 6022.056616 6043.595939 7559.938611 6126.988336 1.037760851 0.963573381 1.157484518 0.94415812 1.270893394 1.349293054 0.98287385 0.986389333 1.233875143 1 12.58096239 -5.773833917 24.9985882 1.020758365 1.150036865 0.063602583 0.135278932 261.6684269 527760.1565 0.017416637 0.031732191 1.68E-06 5.773833917 0.129278501 GAGGAGAGPGGGGS(ph)GGVAK ddPTM_HeLa_CUDC101_4h_R1 1 GAGGAGAGPGGGGSGGVAK 19 0 H0YLD8;H0YLW6;H0YLM1 H0YLD8 SHF 1 0 GAGGAGAGPGGGGS(1)GGVAK 66.56 0.018939 12067000 2777.5 2364.9 2507.2 2225.3 3174.2 2952.5 2389.5 2092.9 2917.8 2703.7 TRUE FALSE FALSE 2451.92566 2437.759766 2642.746816 2316.057353 2940.04559 2896.185982 2481.663815 2331.147276 2797.527049 2687.618272 0.912304283 0.907033484 0.983304379 0.861750858 1.09392231 1.077603174 0.923369156 0.867365466 1.040894489 1 11.39211253 -5.773607938 24.99991757 0.949335038 0.991982359 0.058112467 0.078035578 520.5485754 1069451.661 0.011456173 0.020875017 1.68E-06 5.773607938 0.042647321 AEAGAGS(ph)ATEFQFR ddPTM_HeLa_CUDC101_4h_R1 2 AEAGAGSATEFQFR 14 0 P46783;Q9NQ39 P46783 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 1 0 AEAGAGS(1)ATEFQFR;AEAGAGS(0.773)AT(0.227)EFQFR ; 209.53 1.06E-23 72093000 3056 2445 2033.95 2002.56 1997.45 1206.63 1511.44 1040.65 2018.91 2355.9 TRUE FALSE FALSE 2697.780313 2520.327552 2143.911489 2084.233053 1850.102093 1183.615543 1569.736747 1159.11339 1935.689675 2341.887002 1.151968609 1.076195201 0.915463251 0.889980196 0.790004851 0.505411039 0.670287143 0.49494847 0.82655127 1 11.19345575 -5.773551956 1.024666983 1.072385744 0.542890085 0.754851261 0.104888386 0.129237725 0.261656515 0.013581232 0.041377057 1.68E-06 5.773551956 -0.52949566 SS(ph)SVPHPFQVTLLR ddPTM_HeLa_CUDC101_4h_R1 1 SSSVPHPFQVTLLR 14 0 Q5VV41;Q5VV41-2 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 S(0.032)S(0.921)S(0.047)VPHPFQVTLLR 120.9 0.0014088 31324000 1096.5 777.91 805.37 726.31 1168.5 1063 999.15 538.59 859.07 761.81 TRUE FALSE FALSE 967.9699322 801.876485 848.9107383 755.9320612 1082.302083 1042.725046 1037.68755 599.9009085 823.658771 757.2787202 1.278221487 1.058892141 1.121001707 0.998221713 1.429199123 1.376936943 1.37028484 0.792179804 1.087656036 1 9.564680579 -5.773491006 24.99941977 1.119213082 1.260930314 0.128013642 0.182271635 380.790337 789896.8691 0.028056972 0.051140373 1.68E-06 5.773491006 0.141717232 PQS(ph)S(ph)QGIVEETSEEGNSVPASQS(ph)VAALT(ph)S(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 PQSSQGIVEETSEEGNSVPASQSVAALTSK 30 0 Q96RL1-2 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 5 0 PQS(0.712)S(0.69)QGIVEET(0.288)S(0.288)EEGNS(0.052)VPAS(0.23)QS(0.792)VAALT(0.974)S(0.974)K 40.104 0.0262 8938600 1425.7 1042.3 1093.9 1072.6 1490.4 1327.4 1245 1013.1 1110.5 1171.7 TRUE FALSE FALSE 1258.581607 1074.412028 1153.039543 1116.345264 1380.456161 1302.082057 1293.020067 1128.427209 1064.72472 1164.730676 1.080577367 0.922455336 0.989962372 0.958457854 1.185214908 1.117925442 1.110145112 0.96883102 0.914138128 1 10.18578068 -5.77309396 24.99999221 1.02032161 1.098172873 0.291334805 0.073813568 254.0162416 544885.2033 0.010401271 0.01896804 1.69E-06 5.77309396 0.077851263 VNNGNTAPEDSS(ph)PAKK ddPTM_HeLa_CUDC101_4h_R1 2 VNNGNTAPEDSSPAKK 16 1 E9PJ27;G3V167;Q9UGN5-2;Q9UGN5 E9PJ27 PARP2 Poly [ADP-ribose] polymerase 2 1 0 VNNGNTAPEDS(0.097)S(0.903)PAKK;VNNGNTAPEDS(0.016)S(0.984)PAKK ; 142.84 0.00015466 118020000 11268.5 9538.5 10247.5 9929 9263 9271.2 8734.3 8847.7 9218.9 10096.5 TRUE FALSE FALSE 9947.623512 9832.369879 10801.51085 10333.94754 8579.686944 9094.367307 9071.184877 9854.886404 8838.89304 10036.44557 0.991150048 0.979666537 1.076228708 1.029642164 0.854853134 0.906134273 0.903824448 0.981910014 0.880679617 1 13.29296081 -5.772890674 24.99995546 1.003191843 0.910723161 0.336062736 0.054780996 117.0641709 255569.5151 0.005750669 0.010488385 1.69E-06 5.772890674 -0.092468683 SST(ph)PLSEAK ddPTM_HeLa_CUDC101_4h_R1 1 SSTPLSEAK 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.055)S(0.257)T(0.689)PLSEAK 144.77 0.0061172 86542000 13016 11115 12111 11162 11877 11802 8982.5 3325.8 12941 11977 TRUE FALSE FALSE 11490.28421 11457.43998 12765.75729 11617.23461 11000.85737 11576.89651 9328.958034 3704.395629 12407.5665 11905.76027 0.965102937 0.962344253 1.072233692 0.975765876 0.923994531 0.972377761 0.783566763 0.311143139 1.042148189 1 13.53937213 -4.197158712 1.715194604 0.984689326 4.34E-13 0.963308644 0.040173086 0.126916404 0.318655033 0.005156471 0.214370466 6.35E-05 4.197158712 -0.984689326 down KGAGDGS(ph)DEEVDGKADGAEAK ddPTM_HeLa_CUDC101_4h_R1 1 KGAGDGSDEEVDGKADGAEAK 21 2 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 KGAGDGS(1)DEEVDGKADGAEAK 70.316 0.003935 261670000 3854.1 3505.9 3706.7 3476.1 2825.1 3237 2927.1 2383.4 3168.8 3552.8 TRUE FALSE FALSE 3402.32824 3613.912623 3907.095414 3617.870383 2616.698001 3175.259618 3039.999228 2654.716622 3038.180723 3531.667788 0.963377205 1.023287818 1.106303211 1.024408467 0.740924164 0.899082193 0.860782896 0.751689225 0.860267983 1 11.78613392 -5.77287991 24.99974689 0.998591244 0.82266432 0.60518129 0.072294761 95.63295719 208976.4726 0.008914918 0.016261048 1.69E-06 5.77287991 -0.175926924 S(ph)RSPGS(ph)PVGEGTGSPPK ddPTM_HeLa_CUDC101_4h_R1 1 SRSPGSPVGEGTGSPPK 17 1 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;P35611-5;A0A0A0MSR2 E7EV99 ADD1 Alpha-adducin 2 0 S(0.562)RS(0.438)PGS(0.974)PVGEGT(0.026)GSPPK 136.46 0.0027718 5567800 4889.5 3731.6 4268.5 4071.7 3966 3967.4 3678.3 3569.5 4147.8 4043.3 TRUE FALSE FALSE 4316.360222 3846.566173 4499.268022 4237.761525 3673.436081 3891.728455 3820.173263 3975.837452 3976.825928 4019.250272 1.073921734 0.957035744 1.119429674 1.054366173 0.913960523 0.968272238 0.950469119 0.989198777 0.989444712 1 11.9727107 -5.772550308 24.99812776 1.037490658 0.956031663 0.394180254 0.046436823 156.3120882 351682.0118 0.006815091 0.012437002 1.69E-06 5.772550308 -0.081458995 LEKPETQS(ph)SPITVQSSK ddPTM_HeLa_CUDC101_4h_R1 1 LEKPETQSSPITVQSSK 17 1 Q96CB8;A0A087WXN4;E9PGI3 Q96CB8 INTS12 Integrator complex subunit 12 1 0 LEKPET(0.001)QS(0.558)S(0.357)PIT(0.082)VQS(0.002)S(0.001)K 64.761 0.021045 57742000 3627.1 3231.3 3033.6 3126.2 2989.5 2969.6 2892.8 2468.9 2993 3359.3 TRUE FALSE FALSE 3201.936836 3330.852523 3197.605592 3253.699949 2768.970541 2912.959828 3004.376265 2749.949596 2869.627273 3339.318734 0.958859304 0.997464689 0.957562259 0.974360403 0.82920223 0.87232159 0.899697365 0.823506175 0.859345124 1 11.70533809 -5.772354666 24.97576578 0.979222021 0.860442934 0.523628372 0.044793673 57.19702542 130875.2336 0.003713633 0.006778777 1.69E-06 5.772354666 -0.118779088 QDVDNASLAR ddPTM_HeLa_CUDC101_4h_R1 2 QDVDNASLAR 10 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 0 ; ; 155.53 0.00065127 92525000 4333.4 3862.2 4286.7 4164.1 3931.1 3694.3 3617.2 4216.9 4697.7 4049.6 FALSE FALSE TRUE 3825.445421 3981.189804 4518.451969 4333.929997 3641.110585 3623.837383 3756.716616 4696.934851 4504.058818 4025.512799 0.950300151 0.988989479 1.122453758 1.07661563 0.90450851 0.900217578 0.933226847 1.166791682 1.118878275 1 11.97495686 -4.252022075 24.44116435 0.981270385 1.166791818 0.257405301 0.080061888 777.0707106 2016709.7 0.009858681 0.16442591 5.60E-05 4.252022075 0.185521433 NQS(ph)SEDILR ddPTM_HeLa_CUDC101_4h_R1 3 NQSSEDILR 9 0 Q13625-2;Q13625;Q13625-3;H0Y847 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 NQS(0.988)S(0.012)EDILR;NQS(0.774)S(0.226)EDILR;NQS(0.972)S(0.028)EDILR ;; 142.19 0.0015702 37224100 7935 8018.5 6446.2 7322 10287.4 10532.3 8598.5 6388.5 8585.6 8370.3 TRUE FALSE FALSE 7004.871329 8265.540481 6794.701071 7620.622808 9528.518997 10331.41393 8930.147025 7115.741017 8231.697934 8320.513083 0.841879732 0.993393123 0.816620442 0.91588376 1.145184065 1.241679909 1.073268792 0.855204594 0.989325761 1 13.02245678 -5.772313031 24.85210397 0.919615416 1.090068625 0.324369557 0.107189619 167.3855078 382565.7583 0.016601198 0.030307844 1.69E-06 5.772313031 0.170453209 SHT(ph)SEGAHLDITPNSGAAGNSAGPK ddPTM_HeLa_CUDC101_4h_R1 1 SHTSEGAHLDITPNSGAAGNSAGPK 25 0 Q92597;E5RJY1;E7ESM1;Q92597-3;Q92597-2 Q92597 NDRG1 Protein NDRG1 1 0 S(0.114)HT(0.443)S(0.443)EGAHLDITPNSGAAGNSAGPK 80.172 3.33E-05 49534000 1462.9 1264.6 824.5 895.68 2158.8 1639 1409.6 1326.6 1519.5 1141 TRUE FALSE FALSE 1291.42108 1303.560827 869.074964 932.2097019 1999.549625 1607.738806 1463.968744 1477.614782 1456.865567 1134.213281 1.138605147 1.149308378 0.766235926 0.821899829 1.762939703 1.417492488 1.290734969 1.302766249 1.284472322 1 10.14747624 -5.77231267 24.99999847 1.033807702 1.430716304 0.542057952 0.187433179 123.3650035 283642.5431 0.02651874 0.048409994 1.69E-06 5.77231267 0.396908602 VAEPGAEATSSTGEES(ph)GSEHPPAVPMHNK ddPTM_HeLa_CUDC101_4h_R1 1 VAEPGAEATSSTGEESGSEHPPAVPMHNK 29 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VAEPGAEAT(0.008)S(0.016)S(0.05)T(0.05)GEES(0.652)GS(0.224)EHPPAVPMHNK 68.192 9.22E-05 13958000 1346.9 1029.5 963.11 846.63 1703.1 1427.3 1017.6 1039.9 1134.2 1133.2 TRUE FALSE FALSE 1189.018424 1061.217675 1015.17864 881.1592308 1577.465706 1400.076631 1056.849173 1158.278013 1087.447796 1126.459676 1.055535719 0.942082258 0.9012117 0.782237704 1.400374767 1.242899911 0.938204177 1.028246317 0.965367708 1 10.13757995 -5.772201185 24.99998626 0.994156944 1.143591443 0.318930892 0.138628683 264.8980211 615366.2769 0.021567398 0.039383768 1.69E-06 5.772201185 0.1494345 IGPLGLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 IGPLGLSPK 9 0 P30050 P30050 RPL12 60S ribosomal protein L12 1 0 IGPLGLS(1)PK;IGPLGLS(1)PK ; 123.51 0.004852 536120000 11037 10150.8 8720.5 9131.5 9464.2 7513.3 5872.9 7962.4 11265.1 10883.6 TRUE FALSE FALSE 9743.259591 10463.53412 9191.956608 9503.92204 8766.044821 7369.996321 6099.41972 8868.807431 10800.74781 10818.86386 0.900580663 0.967156464 0.849623096 0.878458419 0.810255581 0.681217216 0.563776363 0.819754047 0.998325512 1 13.40126138 -5.772034774 0.924624769 0.95386747 0.665579088 0.710881484 0.071009733 0.235301311 0.379954195 0.012152382 0.039933433 1.69E-06 5.772034774 -0.288288382 IIYDS(ph)DS(ph)ESEETLQVK ddPTM_HeLa_CUDC101_4h_R1 1 IIYDSDSESEETLQVK 16 0 P35251-2;P35251;D6RAD2;E0CX09 P35251-2 RFC1 Replication factor C subunit 1 2 0 IIY(0.055)DS(0.945)DS(0.811)ES(0.189)EETLQVK 116.86 0.0074017 4152600 922.62 909.28 795.21 708.1 1211.9 958.19 875.36 915.61 877.94 825.03 TRUE FALSE FALSE 814.4718822 937.293839 838.201458 736.9793787 1122.500551 939.9141222 909.1229284 1019.839341 841.7509416 820.1226849 0.993109808 1.142870276 1.022043986 0.898620892 1.368698333 1.146065265 1.108520646 1.243520464 1.026371977 1 9.679695933 -5.771970241 24.99997032 1.004822843 1.203928593 0.574108774 0.085102811 110.3579556 261986.9987 0.012099568 0.02209774 1.69E-06 5.771970241 0.19910575 RAS(ph)GQAFELILS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 5 RASGQAFELILSPR 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 2 0 RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR;RAS(1)GQAFELILS(1)PR ;;;; 101.53 0.003641 351668000 15236.8 13840.8 11799.4 13244.4 14940.6 13637.7 10933.5 5136.85 14522.1 14336.5 TRUE FALSE FALSE 13450.7654 14267.21864 12437.31126 13784.56388 13838.4617 13377.58359 11355.20876 5721.60824 13923.49289 14251.22586 0.943832168 1.001122204 0.872718696 0.967254608 0.971036586 0.938697044 0.796788211 0.40148183 0.977003173 1 13.7987984 -4.196192369 1.687196619 0.966966734 0.136100942 0.959539096 0.034686905 0.158564891 0.381608407 0.005293987 0.223286682 6.37E-05 4.196192369 -0.830865792 down ELLHSVHPES(ph)PNLK ddPTM_HeLa_CUDC101_4h_R1 2 ELLHSVHPESPNLK 14 0 Q9Y217 Q9Y217 MTMR6 Myotubularin-related protein 6 1 0 ELLHSVHPES(1)PNLK;ELLHSVHPES(1)PNLK ; 107.39 0.0034588 13962000 4090.9 2407.3 2429.8 2265.6 5206.3 3959.4 3507 2637 3940.2 3205.5 TRUE FALSE FALSE 3611.370903 2481.46606 2561.162338 2358.000961 4822.241621 3883.881042 3642.266165 2937.185421 3777.783288 3186.433543 1.1333583 0.778759709 0.803770831 0.740012597 1.513366451 1.21888029 1.143054175 0.92177834 1.18558358 1 11.63772686 -5.771893648 24.99980965 0.998971062 1.196655207 0.26669906 0.196410663 277.3926337 663343.2504 0.030263394 0.055281363 1.69E-06 5.771893648 0.197684145 QEDKDDLDVTELTNEDLLDQLVK ddPTM_HeLa_CUDC101_4h_R1 1 QEDKDDLDVTELTNEDLLDQLVK 23 1 P42166;P42167;G5E972;H0YJH7;P42167-2;P42167-3 P42166;P42167 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 0 0 127.92 2.22E-07 6682100 1434.6 1370.6 1116.6 1206.7 1403.3 1333.1 1192.4 1178.3 1326.6 1488 FALSE FALSE TRUE 1266.438363 1412.826561 1176.966774 1255.914442 1299.781355 1307.673339 1238.391267 1312.432909 1271.916987 1479.14931 0.856193729 0.955161559 0.795705184 0.849078882 0.878735734 0.884071223 0.83723209 0.887288998 0.85989763 1 10.53055197 -9.426019092 0.563762258 1.031097792 0.862976473 0 0.058372891 0.71646564 0.291290142 0.065804531 0.008727446 3.75E-10 9.426019092 -0.168121319 DASSQDCY(ph)DIPR ddPTM_HeLa_CUDC101_4h_R1 1 DASSQDCYDIPR 12 0 Q13480-2;B7Z3B9;Q13480 Q13480-2 GAB1 GRB2-associated-binding protein 1 1 0 DASSQDCY(1)DIPR 134.3 0.0083643 5933100 1302.2 1151.9 1562.3 1188.5 1131.2 1122.7 895.32 971.55 1363.6 1317.2 TRUE FALSE FALSE 1149.55809 1187.388674 1646.762664 1236.972167 1047.75363 1101.286368 929.8527923 1082.147325 1307.391831 1309.365236 0.877950673 0.906842981 1.257680148 0.944711325 0.80019967 0.841084167 0.7101554 0.826467127 0.998492854 1 10.35465187 -5.771813525 5.368872651 0.964933264 0.790604819 0.459290742 0.10460594 0.148765722 12.72589021 0.016464548 0.031531625 1.69E-06 5.771813525 -0.174328445 VEAPEYIPISDDPKAS(ph)AK ddPTM_HeLa_CUDC101_4h_R1 1 VEAPEYIPISDDPKASAK 18 1 Q1ED39;H3BPL4 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 0 VEAPEYIPIS(0.012)DDPKAS(0.988)AK 97.57 0.0016138 21010000 4798.3 3817.1 3739.9 3810.4 4169.8 3954.1 3431.8 1101.9 4554.9 4470.6 TRUE FALSE FALSE 4235.850548 3934.700327 3942.090307 3965.804582 3862.202161 3878.68213 3564.165676 1227.335842 4367.145094 4444.008672 0.953159829 0.885394385 0.887057294 0.892393529 0.869080699 0.872789055 0.802015914 0.276177643 0.982703999 1 12.11764592 -4.19401075 1.745533303 0.947522461 7.33E-23 0.935755183 0.049862929 0.226200143 0.589370998 0.008936845 0.37356716 6.40E-05 4.19401075 -0.947522461 down LSSSDRYSDAS(ph)DDS(ph)FSEPR ddPTM_HeLa_CUDC101_4h_R1 1 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 2 0 LS(0.002)S(0.017)S(0.021)DRY(0.001)S(0.352)DAS(0.608)DDS(0.988)FS(0.011)EPR 142.58 0.00069438 18763000 2409.9 1907 2048 1936.4 1748.5 1797.9 1660 1494.6 2097.3 1934.9 TRUE FALSE FALSE 2127.415175 1965.75241 2158.721075 2015.374762 1619.516639 1763.608053 1724.026756 1664.739223 2010.848406 1923.391129 1.106075173 1.022024268 1.122351581 1.047823675 0.842011078 0.916926374 0.896347462 0.865522981 1.045470355 1 10.90943645 -5.77177441 24.77254608 1.054798508 0.883978398 0.836005534 0.038400299 66.32805027 158985.2566 0.007022581 0.012832815 1.69E-06 5.77177441 -0.17082011 S(ph)LTNSHLEK ddPTM_HeLa_CUDC101_4h_R1 2 SLTNSHLEK 9 0 F8VX12;F8VX04;Q9H2H9 F8VX12 SLC38A1 Sodium-coupled neutral amino acid transporter 1 1 0 S(0.782)LT(0.217)NS(0.001)HLEK;S(0.981)LT(0.019)NSHLEK ; 112.42 0.0057864 41995000 16779 11721 10527.9 12726.3 8731.4 11151.2 9963.4 7738.2 7299.1 10591.3 TRUE FALSE FALSE 14812.19106 12082.11012 11097.07012 13245.33352 8087.302017 10938.50944 10347.69168 8619.085409 6998.228009 10528.30248 1.40689262 1.147583872 1.05402273 1.258069243 0.768148715 1.038962308 0.982845212 0.818658604 0.664706207 1 13.36198522 -5.771719229 24.9918265 1.185514619 0.91768942 0.057039876 0.207311449 167.3906814 406951.7695 0.025021282 0.04572144 1.69E-06 5.771719229 -0.267825199 HVDSLSQRS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 HVDSLSQRSPK 11 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 HVDS(0.008)LS(0.03)QRS(0.962)PK 69.229 0.034799 48867000 2064.2 1628.2 1321.8 1639.8 5084 3155.6 3554.1 4247.4 3035 2071.3 TRUE FALSE FALSE 1822.237605 1678.362912 1393.260506 1706.678132 4708.963449 3095.412188 3691.182828 4730.906847 2909.896015 2058.979815 0.885019655 0.815142965 0.676675165 0.828895028 2.287037208 1.503371798 1.792724144 2.297694621 1.413270783 1 11.00771397 -5.771516277 24.99998139 0.903839748 1.924184239 0.761226246 0.282797886 58.53834691 145229.1849 0.03358249 0.061386517 1.69E-06 5.771516277 1.020344491 QEEMNSQQEEEEMETDAR ddPTM_HeLa_CUDC101_4h_R1 2 QEEMNSQQEEEEMETDAR 18 0 E9PPJ0;Q13435;E9PJ04;H0YCG1 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 0 0 ; ; 259.08 1.02E-86 0 655.05 637.53 570.53 740.71 755.03 591.67 635.96 679.37 632.94 753.21 FALSE FALSE TRUE 578.266032 657.1715436 601.3745776 770.9193554 699.3329411 580.3848805 660.4891902 756.7067347 606.8499453 748.7298734 0.772329317 0.877715137 0.803192979 1.029636165 0.934025696 0.775159241 0.88214617 1.010653857 0.810505854 1 9.548301507 GTPKPPGPPAQPPGPPNAS(ph)SNPDLRR ddPTM_HeLa_CUDC101_4h_R1 2 GTPKPPGPPAQPPGPPNASSNPDLRR 26 2 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 GTPKPPGPPAQPPGPPNAS(0.5)S(0.5)NPDLRR;GTPKPPGPPAQPPGPPNAS(0.5)S(0.5)NPDLRR ; 87.671 7.35E-06 60277000 2734 1940.32 1958.27 2107.8 3170.7 2448.5 2641.6 2607.5 2425.8 2305.34 TRUE FALSE FALSE 2413.524664 2000.098959 2064.14 2193.765195 2936.803778 2401.798942 2743.487397 2904.32726 2325.807497 2291.627735 1.053192291 0.872785282 0.900730938 0.957295621 1.281536147 1.048075525 1.197178475 1.267364335 1.014915059 1 11.16215699 -5.771381176 24.99981416 0.998404429 1.187694109 0.65353138 0.080637521 118.9124293 299019.77 0.012749495 0.023312324 1.69E-06 5.771381176 0.18928968 LQPMES(ph)NY(ph)TVLIGGCGRVGYLK ddPTM_HeLa_CUDC101_4h_R1 1 LQPMESNYTVLIGGCGRVGYLK 22 1 G3V325;O75127 G3V325 ATP5J2-PTCD1;PTCD1 "Pentatricopeptide repeat-containing protein 1, mitochondrial" 2 0 LQPMES(0.811)NY(0.769)T(0.42)VLIGGCGRVGYLK 49.592 0.0032556 0 931.07 686.43 899.45 740.4 1375.9 1159.3 1085.6 987.03 971.36 748.48 TRUE FALSE FALSE 821.931386 707.5780947 948.0769877 770.5967123 1274.402598 1137.188284 1127.471956 1099.389505 931.3201297 744.0280077 1.1047049 0.951010026 1.274249058 1.03570928 1.712842239 1.528421339 1.51536225 1.477618442 1.251727247 1 9.53921312 -5.771198448 24.99980138 1.060267721 1.553322602 0.784533215 0.115685273 51.35189658 131548.3123 0.014465669 0.026457163 1.69E-06 5.771198448 0.493054881 QEETAVLEEDSADWEK ddPTM_HeLa_CUDC101_4h_R1 1 QEETAVLEEDSADWEK 16 0 Q96A49 Q96A49 SYAP1 Synapse-associated protein 1 0 0 156 5.36E-07 0 816.44 768.33 594.11 629.24 591.31 586.68 544.76 517.8 632.43 564.51 FALSE FALSE TRUE 720.7381408 792.0013366 626.2293837 654.903127 547.6902394 575.4900565 565.7715757 576.744259 606.3609677 561.1522694 1.284389604 1.411384004 1.115970509 1.167068482 0.976010023 1.025550618 1.008231823 1.027785666 1.080564048 1 9.132248491 -5.768132585 24.78975507 1.161034101 1.010465484 0.365141831 0.106811018 169.2353445 626802.8784 0.020531671 0.03785246 1.71E-06 5.768132585 -0.150568617 QEGGDNDLIER ddPTM_HeLa_CUDC101_4h_R1 2 QEGGDNDLIER 11 0 A0A1B0GWJ0;A0A1B0GTJ7;A0A0A6YY92;P30566;A0A096LNY6 A0A1B0GWJ0 ADSL Adenylosuccinate lyase 0 0 ; ; 153.54 0.0021068 23253800 2509.1 1889.06 2039.15 2067.38 1966.04 2301.6 1955.73 1875.63 2034.69 2065.89 FALSE FALSE TRUE 2214.987102 1947.2597 2149.392617 2151.696692 1821.009146 2257.700815 2031.163161 2089.144138 1950.819217 2053.601994 1.078586361 0.948216697 1.046645174 1.047767142 0.886739081 1.099385772 0.989073426 1.017307221 0.949950001 1 11.00394089 -7.283492548 24.97190307 1.037110222 1.006731302 0 0.063876441 1944.969933 2202381.243 0.009860161 0.011281383 5.21E-08 7.283492548 -0.03037892 GAGPQLLEELDNAPGS(ph)DAAELELAPARTPPDSVKDASAAEPAAAER ddPTM_HeLa_CUDC101_4h_R1 2 GAGPQLLEELDNAPGSDAAELELAPARTPPDSVKDASAAEPAAAER 46 2 Q9UHR6 Q9UHR6 ZNHIT2 Zinc finger HIT domain-containing protein 2 1 0 GAGPQLLEELDNAPGS(0.49)DAAELELAPART(0.49)PPDS(0.012)VKDAS(0.009)AAEPAAAER;GAGPQLLEELDNAPGS(0.511)DAAELELAPART(0.421)PPDS(0.028)VKDAS(0.04)AAEPAAAER ; 75.643 1.15E-08 49331000 3291.4 3265.4 2958.2 2692.9 4513 3315.9 3516.7 3586.1 4116.7 3249.8 TRUE FALSE FALSE 2905.587081 3366.003104 3118.12924 2802.728102 4180.084981 3252.654732 3652.340297 3994.327128 3947.007884 3230.470045 0.899431674 1.041954594 0.965224626 0.867591422 1.293955654 1.006867325 1.130590981 1.236453851 1.221806062 1 11.65752838 -5.771144932 24.99997912 0.95460961 1.152932993 0.280031327 0.118537081 106.3901009 274044.6291 0.012107477 0.022145118 1.69E-06 5.771144932 0.198323383 QEGHNLGLLHGDMDQSER ddPTM_HeLa_CUDC101_4h_R1 2 QEGHNLGLLHGDMDQSER 18 0 A0A0A0MSJ0;Q86XP3-2;Q86XP3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 0 0 ; ; 57.708 0.020031 16239900 3635.4 2950.2 3060.3 3151.5 3005 2931.5 3137 2785.7 3171.1 3257.5 FALSE FALSE TRUE 3209.263923 3041.092165 3225.749075 3280.031792 2783.327137 2875.586522 3257.995141 3102.812828 3040.385916 3238.124245 0.991087333 0.939152403 0.99617829 1.012941921 0.85954921 0.888040824 1.006136545 0.958213025 0.938934298 1 11.66094263 -5.801590626 24.99990185 0.992077519 0.930713694 0.219498496 0.044126366 131.6539219 81973.0905 0.006181962 0.011205875 1.58E-06 5.801590626 -0.061363825 QEK(ac)PAEKPAETPVATSPTATDSTSGDSSR ddPTM_HeLa_CUDC101_4h_R1 1 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 2 P54727;P54727-2;H0Y579 P54727 RAD23B UV excision repair protein RAD23 homolog B 0 1 QEK(0.987)PAEK(0.013)PAETPVATSPTATDSTSGDSSR 155.95 1.43E-17 5032200 1861.3 1237 981.43 932.12 1994.4 1874.7 2061.7 1530.7 2060.7 1497.1 FALSE TRUE FALSE 1643.121236 1275.110504 1034.489074 970.1358826 1847.277085 1838.943221 2141.22046 1704.948701 1975.757074 1488.195183 1.104103316 0.856816712 0.695129971 0.651887531 1.241286833 1.235686852 1.438803515 1.145648582 1.327619587 1 10.53934804 -5.555585535 24.9689109 0.9786096 1.281349767 0.390192879 0.196277178 147.8242435 112851.0651 0.027192887 0.054386026 2.78E-06 5.555585535 0.302740166 GRAS(ph)SHSS(ph)QTQGGGSVTK ddPTM_HeLa_CUDC101_4h_R1 2 GRASSHSSQTQGGGSVTK 18 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 GRAS(0.804)S(0.197)HS(0.151)S(0.478)QT(0.364)QGGGS(0.006)VT(0.001)K;GRAS(0.904)S(0.105)HS(0.01)S(0.889)QT(0.092)QGGGS(0.001)VTK ; 84.948 0.0079767 12799700 3997.6 2476.26 3230.7 3045.7 5781.6 4181.3 4575.3 4792.1 4332 3235.71 TRUE FALSE FALSE 3529.007388 2552.550636 3405.361414 3169.916811 5355.102887 4101.548669 4751.770854 5337.613294 4153.433126 3216.463853 1.09716992 0.793589094 1.058728333 0.985528504 1.664903798 1.275173251 1.477327609 1.659466277 1.291304151 1 11.65125976 -5.771063435 24.98918495 1.023227338 1.498793838 0.700040805 0.154000884 67.25175394 174621.7295 0.018531331 0.033902853 1.69E-06 5.771063435 0.4755665 S(ph)TELLLGVK ddPTM_HeLa_CUDC101_4h_R1 2 STELLLGVK 9 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 S(0.964)T(0.036)ELLLGVK;S(0.989)T(0.011)ELLLGVK ; 141.1 0.0017174 9893500 6203.4 4824.3 4288.1 4115.3 3725.2 3672.3 3313 2654 4886.5 3286.3 TRUE FALSE FALSE 5476.246856 4972.930965 4519.927657 4283.139722 3450.399418 3602.256996 3440.78352 2956.120632 4685.076402 3266.752941 1.676357825 1.522285601 1.383614781 1.311130593 1.056216824 1.10270261 1.05327326 0.904910988 1.434169184 1 11.67364164 -5.770991292 3.601861121 1.350518501 1.030395579 0.512049527 0.169768124 0.259234756 7.163654503 0.039433847 0.078248337 1.69E-06 5.770991292 -0.320122922 FLSHS(ph)TDSLNK ddPTM_HeLa_CUDC101_4h_R1 4 FLSHSTDSLNK 11 0 Q12802-4;Q12802;Q12802-2;A0A087WTD7;A8MYJ1;A0A087WY36 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 FLS(0.001)HS(0.977)T(0.022)DS(0.001)LNK;FLS(0.003)HS(0.841)T(0.155)DS(0.001)LNK;FLS(0.002)HS(0.988)T(0.01)DSLNK;FLS(0.005)HS(0.874)T(0.023)DS(0.098)LNK ;;; 131.17 0.0018869 117541000 22506 15189.2 14590.9 14472.5 24345.5 21521.5 18199.4 14549.9 20729.6 15844.2 TRUE FALSE FALSE 19867.8808 15657.16125 15379.72819 15062.75111 22549.58097 21111.01324 18901.35695 16206.2018 19875.11711 15749.95799 1.261456113 0.994108127 0.976493283 0.9563677 1.431723245 1.340385368 1.200089357 1.028967938 1.261915563 1 13.94306036 -5.770780097 24.99997835 1.092869154 1.253140906 0.263938751 0.141465195 245.1151461 656039.9502 0.023011851 0.042126519 1.70E-06 5.770780097 0.160271752 NLEPVSWS(ph)SLNPK ddPTM_HeLa_CUDC101_4h_R1 1 NLEPVSWSSLNPK 13 0 P98172 P98172 EFNB1 Ephrin-B1 1 0 NLEPVS(0.193)WS(0.613)S(0.193)LNPK 89.747 0.018487 12261000 3544.7 8956.6 3000.4 4511.8 3164.2 3663.6 3493.7 3326.6 3584 4759.5 TRUE FALSE FALSE 3129.195639 9232.54223 3162.6107 4695.810706 2930.78327 3593.722934 3628.453179 3705.286697 3436.266003 4731.190282 0.661397123 1.951420611 0.66845984 0.992522056 0.619460029 0.759581145 0.766921845 0.783161631 0.726300529 1 12.20798747 -5.770762121 24.88895336 0.924213255 0.736705488 0.098621455 0.354479523 452.7593162 1208735.403 0.052583101 0.096260682 1.70E-06 5.770762121 -0.187507766 TGS(ph)PTFVR ddPTM_HeLa_CUDC101_4h_R1 1 TGSPTFVR 8 0 Q9UPP1-4;Q9UPP1-3;Q9UPP1-2;Q9UPP1;Q9UPP1-5;B0QZZ4;Q5JPR8;B0QZZ2;B0QZZ3;B0QZE1 Q9UPP1-4 PHF8 Histone lysine demethylase PHF8 1 0 T(0.006)GS(0.497)PT(0.497)FVR 112.11 0.010631 11713000 3139.8 2679.1 2781.3 2755.3 2637.4 2757.3 2574.9 2138.7 2544 2812.5 TRUE FALSE FALSE 2771.757404 2761.639895 2931.665491 2867.673043 2442.844256 2704.709096 2674.214756 2382.160963 2439.135243 2795.771125 0.991410698 0.987791837 1.048607114 1.025718099 0.873764034 0.967428654 0.956521345 0.852058647 0.872437383 1 11.44903054 -5.770758852 24.99997743 1.001419641 0.919519143 0.289467462 0.054818201 108.8404926 291970.8403 0.005235253 0.009583527 1.70E-06 5.770758852 -0.081900499 QELSHALYQHDAACR ddPTM_HeLa_CUDC101_4h_R1 1 QELSHALYQHDAACR 15 0 F5H2I0;F5GY56;Q9UMS4 F5H2I0 PRPF19 Pre-mRNA-processing factor 19 0 0 113.65 0.001406 8400900 2172.5 1883.9 1853.1 1782.6 2128.7 1854.8 1715.4 1766.8 2158.4 1250.9 FALSE FALSE TRUE 1917.842843 1941.940726 1953.284191 1855.302133 1971.670042 1819.42278 1781.563553 1967.92537 2069.429838 1243.459591 1.542344325 1.561724032 1.570846536 1.492048593 1.585632582 1.463194135 1.432747445 1.582621087 1.66425178 1 10.28014391 -9.149221443 0.737483723 0.970535807 1.530295909 0 0.21044141 0.146635168 0.13326953 0.049216369 0.011715602 7.09E-10 9.149221443 0.559760102 AVVVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 AVVVSPK 7 0 G3V5E1;O75909-1;O75909 G3V5E1 CCNK Cyclin-K 1 0 AVVVS(1)PK;AVVVS(1)PK ; 127.4 0.0051299 298752300 19693.5 16147.1 15451.9 15845.8 13735.4 14367.4 14347.1 10853.5 17068 15280.8 TRUE FALSE FALSE 17385.05778 16644.57301 16287.27645 16492.06022 12722.16691 14093.36578 14900.47245 12089.01857 16364.44982 15189.90912 1.144513614 1.095765148 1.07224318 1.085724745 0.837540686 0.927811067 0.980945464 0.795858518 1.077323747 1 13.89082562 -5.770545657 24.99958685 1.073551108 0.895373122 0.732221289 0.057206347 96.10266643 263832.5004 0.010177873 0.018639974 1.70E-06 5.770545657 -0.178177986 QEMEK(ac)MTKK ddPTM_HeLa_CUDC101_4h_R1 2 QEMEKMTKK 9 2 Q9NUQ3;Q9NUQ3-2;P40222 Q9NUQ3;P40222 TXLNG;TXLNA Gamma-taxilin;Alpha-taxilin 0 1 ; QEMEK(1)MTKK;QEMEK(1)MTKK 143.37 0.001552 5324600 1656.67 1648.27 1268.75 1660.64 1413.61 1409.3 1200.43 1626.66 1295.18 1518.78 FALSE TRUE FALSE 1462.477654 1699.051245 1337.342463 1728.368077 1309.330807 1382.419951 1246.730987 1811.832399 1241.792132 1509.746229 0.968691046 1.125388633 0.885806129 1.144807017 0.867252245 0.915663788 0.825788443 1.200090694 0.822517128 1 10.56009035 QQTEKPES(ph)EDEWER ddPTM_HeLa_CUDC101_4h_R1 4 QQTEKPESEDEWER 14 1 A2AB15;A0A140T947;O60231 A2AB15 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 1 0 QQTEKPES(1)EDEWER;QQT(0.002)EKPES(0.998)EDEWER;QQT(0.001)EKPES(0.999)EDEWER;QQTEKPES(1)EDEWER ;;; 196.45 9.98E-16 510002700 13709.9 11363.5 11564.8 11878.2 11367 11227.6 10307.1 10711.1 12263.3 12354.1 TRUE FALSE FALSE 12102.8463 11713.59597 12190.02807 12362.64434 10528.47906 11013.45224 10704.6483 11930.40833 11757.80158 12280.61726 0.985524265 0.953827948 0.992623401 1.006679393 0.857324907 0.896815852 0.871670216 0.97148279 0.957427573 1 13.58409546 -5.770453214 24.99999996 0.990526678 0.897169095 0.606161605 0.032531269 76.81290803 213042.0855 0.004283235 0.007846362 1.70E-06 5.770453214 -0.093357583 EISQDS(ph)LAAR ddPTM_HeLa_CUDC101_4h_R1 1 EISQDSLAAR 10 0 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2;H0YKB1 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 EIS(0.178)QDS(0.822)LAAR 85.924 0.034638 6843300 1101.4 960.12 920.24 1004.6 1333.2 1175.8 1208.3 1037.8 1066.6 1138.2 TRUE FALSE FALSE 972.2955616 989.7001592 969.990958 1045.57193 1234.852492 1153.373574 1254.904536 1155.938957 1022.634297 1131.429936 0.859351102 0.874733934 0.857314207 0.924115491 1.091408715 1.019394606 1.109131459 1.021661988 0.903842354 1 10.14393153 -5.770240128 24.60829965 0.920184545 1.06095117 0.715464384 0.047845341 92.03270959 257338.9138 0.009523356 0.017456076 1.70E-06 5.770240128 0.140766625 QEMQEVQSSR ddPTM_HeLa_CUDC101_4h_R1 7 QEMQEVQSSR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;;;;; ;;;;;; 223.87 2.99E-32 881246000 18962.9 16316.2 16562.8 16244.5 18141.6 16322.3 15598.4 16621.6 17270.5 16512.4 FALSE FALSE TRUE 16740.09761 16818.88278 17458.23507 16907.02092 16803.33031 16010.97932 16200.03551 18513.73576 16558.60268 16414.18351 1.019855639 1.024655462 1.06360667 1.030025095 1.02370796 0.975435623 0.986953479 1.127910855 1.008798438 1 14.00265537 -8.275249409 0.847780951 1.002554828 1.029241519 0.06864442 0.039690325 1.127494826 1.720738153 0.01388675 0.008623665 5.31E-09 8.275249409 0.026686691 NSTPSEPGS(ph)GR ddPTM_HeLa_CUDC101_4h_R1 1 NSTPSEPGSGR 11 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 NST(0.079)PS(0.31)EPGS(0.611)GR 98.368 0.015394 178860000 4980.9 4033.1 4519.5 4264 4143.1 3938.3 3610.9 4051.7 4196.1 4458.4 TRUE FALSE FALSE 4397.046453 4157.355031 4763.837841 4437.904351 3837.471767 3863.183489 3750.173623 4512.92915 4023.134982 4431.881239 0.992139955 0.938056506 1.074901962 1.001359042 0.865878746 0.871680282 0.846180983 1.018287474 0.907771388 1 12.11370351 -5.770216269 24.90430855 0.998217304 0.894567408 0.307928569 0.060601214 111.336078 315915.2138 0.007334388 0.01344132 1.70E-06 5.770216269 -0.103649896 QAS(ph)SDSDSILSLK ddPTM_HeLa_CUDC101_4h_R1 1 QASSDSDSILSLK 13 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 QAS(0.751)S(0.21)DS(0.034)DS(0.005)ILS(0.001)LK 131.61 6.29E-05 0 879.12 810.28 584.65 700.24 1046.4 824.14 839.08 874.31 820.14 799.06 TRUE FALSE FALSE 776.0708863 835.2437664 616.2579475 728.7988139 969.2091567 808.4209026 871.4435967 973.8379163 786.3334821 794.3071556 0.977041288 1.051537507 0.775843379 0.917527695 1.220194417 1.017768626 1.097111603 1.226021835 0.989961473 1 9.63355319 -5.769908053 24.99999598 0.971851035 1.128440697 0.506536783 0.089463928 135.7213397 400657.9696 0.013175415 0.024164927 1.70E-06 5.769908053 0.156589661 RAVVVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 RAVVVSPK 8 1 G3V5E1;O75909-1;O75909 G3V5E1 CCNK Cyclin-K 1 0 RAVVVS(1)PK 65.695 0.039372 58734000 5232.7 4111.5 3996.7 3994 3131.4 3046.9 3308.7 3217.8 4478.4 3370.5 TRUE FALSE FALSE 4619.330838 4238.170442 4212.773691 4156.892584 2900.402861 2988.785459 3436.317667 3584.101345 4293.798456 3350.452116 1.378718656 1.264954787 1.25737469 1.240696013 0.865675067 0.892054372 1.025628049 1.069736627 1.281557923 1 11.71014007 -5.769905276 24.99985184 1.200590465 0.962640335 0.594579171 0.108314062 156.4127607 461889.0803 0.023082546 0.042332396 1.70E-06 5.769905276 -0.23795013 TAQVPS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 4 TAQVPSPPR 9 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR;TAQVPS(1)PPR ;;; 98.182 0.019446 2275500000 9842.6 7986.7 9138.7 8973.2 8649.6 8009.5 8137.7 8837.6 9366.9 9270.9 TRUE FALSE FALSE 8688.865348 8232.76076 9632.765765 9339.165881 8011.53624 7856.732132 8451.573815 9843.636661 8980.792417 9215.756274 0.942827164 0.89333534 1.045249622 1.013391154 0.869330308 0.852532543 0.917078703 1.068131184 0.974504116 1 13.16988685 -5.769592912 24.99989606 0.974279211 0.92077353 0.122527168 0.066181926 292.8662238 897971.4452 0.009975805 0.018306131 1.70E-06 5.769592912 -0.053505681 MAPPVDDLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 8 MAPPVDDLSPK 11 0 Q92576-2;Q92576;E7EVH3;E7ER40 Q92576-2 PHF3 PHD finger protein 3 1 0 MAPPVDDLS(1)PK;MAPPVDDLS(1)PK;MAPPVDDLS(1)PK;MAPPVDDLS(1)PK;MAPPVDDLS(1)PK;MAPPVDDLS(1)PK;MAPPVDDLS(1)PK;MAPPVDDLS(1)PK ;;;;;;; 171.73 7.61E-07 708044000 34370.6 32541.6 31478.3 30715.4 29545.7 27688.9 26168.6 29861 31192.3 31916.7 TRUE FALSE FALSE 30341.73037 33544.16812 33180.11211 31968.10678 27366.17257 27160.78037 27177.93167 33260.25554 29906.54019 31726.85805 0.95634211 1.057279863 1.045805168 1.007603927 0.862555395 0.85608163 0.856622223 1.048331212 0.942625335 1 14.95341704 -5.769485182 24.99459452 0.99269396 0.898819657 0.357041975 0.061945236 148.647328 461779.8589 0.008982457 0.016490946 1.70E-06 5.769485182 -0.093874303 EENISAPLISS(ph)SPVK ddPTM_HeLa_CUDC101_4h_R1 1 EENISAPLISSSPVK 15 0 A2A2Y4-4;A2A2Y4-3;A2A2Y4-5;A2A2Y4-2;A2A2Y4 A2A2Y4-4 FRMD3 FERM domain-containing protein 3 1 0 EENISAPLIS(0.004)S(0.889)S(0.107)PVK 171.15 6.81E-07 8663000 6665.2 4655.7 4765.2 5101.3 4229 4251.8 4051.9 3916.7 4469.3 4988.7 TRUE FALSE FALSE 5883.91536 4799.136599 5022.821126 5309.353064 3917.035095 4170.703999 4208.18314 4362.561296 4285.073562 4959.026991 1.186506016 0.967757709 1.012864244 1.070644115 0.789879769 0.841032728 0.848590489 0.879721224 0.864095632 1 12.27584136 -5.769471231 24.99543297 1.072740194 0.840521128 0.413035497 0.089746188 81.35547211 253182.0694 0.012155147 0.022314567 1.70E-06 5.769471231 -0.232219066 KLRS(ph)SVAAPEKS(ph)S(ph)SNDSVDEETAESDTS(ph)PVLEK ddPTM_HeLa_CUDC101_4h_R1 1 KLRSSVAAPEKSSSNDSVDEETAESDTSPVLEK 33 3 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 4 0 KLRS(0.483)S(0.483)VAAPEKS(0.664)S(0.664)S(0.333)NDS(0.333)VDEET(0.04)AES(0.172)DT(0.172)S(0.657)PVLEK 42.039 0.027424 4181900 437.29 612.45 479.44 509.82 417.89 435.45 448.79 341.81 459.66 629.49 TRUE FALSE FALSE 386.0315291 631.3188586 505.3599766 530.6126632 387.0630873 427.1445168 466.0999806 380.7202688 440.7126202 625.7457655 0.616914329 1.008906322 0.8076123 0.847968444 0.618562855 0.682616712 0.74487117 0.608426441 0.704299804 1 9.289432813 -5.769323226 24.95068264 0.831550796 0.670779955 0.331363216 0.116266315 209.3052264 662407.7738 0.022384306 0.041114177 1.70E-06 5.769323226 -0.160770841 SQS(ph)IEQESQEK ddPTM_HeLa_CUDC101_4h_R1 3 SQSIEQESQEK 11 0 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 SQS(1)IEQESQEK;S(0.001)QS(0.996)IEQES(0.003)QEK;S(0.339)QS(0.661)IEQESQEK ;; 225.72 1.46E-32 431056000 10267.1 8703.3 9429 8777.2 8536.5 7611 8104.5 7747.01 10066 9261 TRUE FALSE FALSE 9063.606102 8971.438357 9938.760261 9135.172154 7906.779402 7465.832856 8417.09328 8628.898304 9651.075219 9205.91516 0.984541563 0.974529767 1.079605893 0.992315484 0.858880325 0.810982149 0.914313584 0.937321076 1.048355872 1 13.16834543 -5.769030997 23.99046235 0.998234126 0.877841933 0.676273508 0.044293126 46.87053583 148117.6423 0.006197253 0.011401677 1.70E-06 5.769030997 -0.120392193 RTDALTS(ph)SPGR ddPTM_HeLa_CUDC101_4h_R1 2 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RT(0.001)DALT(0.19)S(0.62)S(0.19)PGR;RTDALT(0.013)S(0.751)S(0.236)PGR ; 98.253 0.0082675 1415049000 3216 2184.81 2226.2 2821.6 1785.56 2274.86 2260.06 1900.88 2280.75 2381.7 TRUE FALSE FALSE 2839.025355 2252.121406 2346.555106 2936.677044 1653.842796 2231.470836 2347.231271 2117.268496 2186.73652 2367.533542 1.199148947 0.951252164 0.991139117 1.240395116 0.698550946 0.942529766 0.991424717 0.894292925 0.923634863 1 11.20916915 -5.768793412 24.99999962 1.084904812 0.893882104 0.29379584 0.121299858 135.5181547 460694.7303 0.017660537 0.032479526 1.70E-06 5.768793412 -0.191022708 EEPLS(ph)EEEPCTSTAIAS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 1 EEPLSEEEPCTSTAIASPEK 20 0 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 EEPLS(1)EEEPCT(0.005)S(0.004)T(0.01)AIAS(0.981)PEK 80.722 0.011039 7942900 3237.3 2521.8 2522.1 2539.6 1964.1 2160.2 2203 1670.6 2671.5 2117.9 TRUE FALSE FALSE 2857.828601 2599.493669 2658.452355 2643.175865 1819.212256 2118.997784 2287.970448 1860.774351 2561.379639 2105.302637 1.35744313 1.234736338 1.262741189 1.255484993 0.864109617 1.006505073 1.086765583 0.883851242 1.216632514 1 11.03981192 -5.76860661 24.99954884 1.191465452 0.972640366 0.58926247 0.104750173 145.166624 506348.1556 0.022005243 0.040496885 1.70E-06 5.76860661 -0.218825086 QEPLEEDSPSSSSAGLDK(ac)AQR ddPTM_HeLa_CUDC101_4h_R1 2 QEPLEEDSPSSSSAGLDKAQR 21 1 P15408;P15408-3;P15408-2 P15408 FOSL2 Fos-related antigen 2 0 1 ; QEPLEEDSPSSSSAGLDK(1)AQR;QEPLEEDSPSSSSAGLDK(1)AQR 287.03 1.52E-100 2823200 531.64 612.35 683.92 844.92 940.43 689.2 870.59 1687.72 98.038 245.92 FALSE TRUE FALSE 469.3219651 631.2157777 720.8947839 879.3794897 871.0563525 676.0546583 904.1689479 1879.843223 93.99683214 244.4572569 1.919852865 2.582111023 2.948960457 3.597272999 3.563225586 2.765533193 3.698679104 7.689864668 0.384512341 1 7.933438423 -1 0.246330354 1.128015479 32.94394008 0.777813784 0.886800246 16.25971483 0.202088358 0.484739005 215.7963809 0.1 1 31.8159246 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSSPR 40 2 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;C9JQE8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 VHEPPREDAAPTKPAPPAPPPPQNLQPES(0.007)DAPQQPGS(0.496)S(0.496)PR 57.41 9.39E-05 113510000 1841.1 1582.7 1862.7 1440.8 2477.5 1812.1 1662.2 2050.3 2012.4 1946.5 TRUE FALSE FALSE 1625.289049 1631.461111 1963.403196 1499.562052 2294.739761 1777.537212 1726.311611 2283.697864 1929.44802 1934.922131 0.839976463 0.843166288 1.014719489 0.774998656 1.185959747 0.918660851 0.892186607 1.180253111 0.997170888 1 10.91805979 -5.768605331 24.99937806 0.914085753 1.024430602 0.233368205 0.115467153 219.9963304 767488.8726 0.01681808 0.030945992 1.70E-06 5.768605331 0.110344849 VSNS(ph)PEPQKAVEQEDELSDVSQGGSK ddPTM_HeLa_CUDC101_4h_R1 1 VSNSPEPQKAVEQEDELSDVSQGGSK 26 1 O60271;O60271-3;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 VS(0.311)NS(0.687)PEPQKAVEQEDELS(0.001)DVSQGGSK 63.823 0.0014888 12559000 843.96 730.73 860.58 828.79 1261.6 1043.8 1019 1140.6 990.29 992.36 TRUE FALSE FALSE 745.0322882 753.2429252 907.1055579 862.5916385 1168.534281 1023.891254 1058.303171 1270.441294 949.469827 986.4573986 0.75526048 0.763583837 0.919558776 0.874433746 1.184576529 1.037947767 1.072832109 1.287882574 0.962504644 1 9.946112937 -5.768564267 24.89314283 0.873969987 1.132892637 0.650002324 0.09559941 89.76688174 313631.3156 0.017058776 0.031402527 1.70E-06 5.768564267 0.25892265 MTNS(ph)PVLPVGSTTNGSR ddPTM_HeLa_CUDC101_4h_R1 2 MTNSPVLPVGSTTNGSR 17 0 P37275-3;P37275-4;P37275-5;P37275;P37275-2 P37275-3 ZEB1 Zinc finger E-box-binding homeobox 1 1 0 MT(0.118)NS(0.597)PVLPVGS(0.022)T(0.022)T(0.062)NGS(0.179)R;MT(0.041)NS(0.959)PVLPVGSTTNGSR ; 145.17 0.00016518 15906800 2227.17 2332.7 1814.58 2048.23 1663.62 1923.51 1336.19 1554.49 2245.05 2303.62 TRUE FALSE FALSE 1966.104509 2404.567722 1912.681684 2131.765673 1540.898067 1886.822252 1387.727296 1731.446858 2152.508089 2289.917966 0.858591678 1.050067189 0.835262098 0.930935389 0.672905357 0.823969365 0.606016162 0.756117417 0.939993537 1 11.1610802 -5.768551902 24.98081412 0.933099465 0.714786453 0.65942907 0.077812 77.75549592 273096.0902 0.011939572 0.021976011 1.70E-06 5.768551902 -0.218313011 T(ph)SMLRSLLCSCSWR ddPTM_HeLa_CUDC101_4h_R1 1 TSMLRSLLCSCSWR 14 1 Q7L591-2;Q7L591-4;Q7L591-3 Q7L591-2 1 0 T(0.5)S(0.5)MLRSLLCSCSWR 73.252 0.02973 221170000 7258.9 4524.6 4603.7 4349 8832 6430.8 5826.6 6051.3 6649.8 5881.9 TRUE FALSE FALSE 6408.022746 4663.997563 4852.589947 4526.371018 8180.480956 6308.143204 6051.333914 6740.155532 6375.692429 5846.914197 1.095966612 0.79768531 0.829940338 0.774146989 1.399110827 1.078884176 1.034961983 1.152771411 1.090437146 1 12.5134597 -5.768401254 24.99999791 0.990840494 1.150787955 0.343030739 0.145417644 205.4754553 737861.7679 0.023219939 0.042753949 1.70E-06 5.768401254 0.159947461 QEQALLEEIER ddPTM_HeLa_CUDC101_4h_R1 1 QEQALLEEIER 11 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 174.84 2.77E-06 5373200 1470.8 1046.8 966.92 1176.6 1254.7 1198.5 1226 1000.6 1432.1 1273.5 FALSE FALSE TRUE 1298.395054 1079.050667 1019.19462 1224.586834 1162.143281 1175.640609 1273.287231 1114.504259 1373.068232 1265.925165 1.025649137 0.852381086 0.805098633 0.967345359 0.918018942 0.928680969 1.005815561 0.880387159 1.084636177 1 10.30597641 -7.278518564 24.81415399 1.012112096 0.911467022 0.492964218 0.058072647 521.7546352 758049.7167 0.009393307 0.01075697 5.27E-08 7.278518564 -0.100645074 LQGQVS(ph)AK ddPTM_HeLa_CUDC101_4h_R1 1 LQGQVSAK 8 0 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 LQGQVS(1)AK 83.862 0.037431 35259000 2099.5 1626.4 2210.5 1992.2 2129.2 1587.8 1700.4 466.29 2304.6 2024.3 TRUE FALSE FALSE 1853.399793 1676.507456 2330.006316 2073.450527 1972.133158 1557.51536 1765.984998 519.3705688 2209.603413 2012.259374 0.921054123 0.833146799 1.15790556 1.030409178 0.980059124 0.774013222 0.877613006 0.258103193 1.098070876 1 10.97460056 -4.189081143 1.846339075 0.965100819 2.69E-27 0.793966428 0.10855897 0.331005776 0.9813733 0.014070974 0.58363512 6.47E-05 4.189081143 -0.965100819 down VADPDHDHTGFLTEY(ph)VATR ddPTM_HeLa_CUDC101_4h_R1 3 VADPDHDHTGFLTEYVATR 19 0 P28482-2;P28482 P28482-2 MAPK1 Mitogen-activated protein kinase 1 1 0 VADPDHDHTGFLT(0.009)EY(0.99)VATR;VADPDHDHTGFLTEY(1)VATR;VADPDHDHTGFLTEY(1)VATR ;; 220.64 2.83E-32 92636000 16704 15086.3 14308.1 15878.9 28361.4 27190.3 27877 21433.3 16248.4 16890.8 TRUE FALSE FALSE 14745.98244 15551.09102 15081.63917 16526.51018 26269.23603 26671.69033 28952.22523 23873.18024 15578.63407 16790.33277 0.878242417 0.926193139 0.898233488 0.984287233 1.564545288 1.588514694 1.724338977 1.421840803 0.927833551 1 14.0353432 -5.768390564 5.059415515 0.936855924 1.591571025 0.946337012 0.074612691 0.028467466 2.011611616 0.011295706 0.021787093 1.70E-06 5.768390564 0.6547151 S(ph)RATAQKDEKCY(ph)EVFS(ph)LS(ph)QS(ph)SQR ddPTM_HeLa_CUDC101_4h_R1 1 SRATAQKDEKCYEVFSLSQSSQR 23 3 Q9HBJ0 Q9HBJ0 PLAC1 Placenta-specific protein 1 5 0 S(0.5)RAT(0.5)AQKDEKCY(0.926)EVFS(0.768)LS(0.768)QS(0.768)S(0.768)QR 41.521 0.025119 15066000 892.26 768.28 1521 737.43 2584.7 2391.4 1386.7 1812.9 2290.6 945.96 TRUE FALSE FALSE 787.6706354 791.9497962 1603.229861 767.5055828 2394.03183 2345.788029 1440.185484 2019.273208 2196.180498 940.3333878 0.837650397 0.842201081 1.704958987 0.816205819 2.54593941 2.494634413 1.531569018 2.147401373 2.335533893 1 9.877028534 -5.768369641 24.99990209 0.973228376 2.156059756 0.334950868 0.557577996 62.30003436 224739.0398 0.052270335 0.096262386 1.70E-06 5.768369641 1.18283138 KLSVPT(ph)S(ph)DEEDEVPAPKPR ddPTM_HeLa_CUDC101_4h_R1 2 KLSVPTSDEEDEVPAPKPR 19 2 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 2 0 KLS(0.067)VPT(0.966)S(0.966)DEEDEVPAPKPR;KLS(0.486)VPT(0.567)S(0.947)DEEDEVPAPKPR ; 83.253 0.0066955 91031000 4769.1 4371 4331.4 4307.8 4318.2 4026.4 4079 3767.7 3953.3 4681.4 TRUE FALSE FALSE 4210.073327 4505.665329 4565.568586 4483.490704 3999.654989 3949.603128 4236.328396 4196.599738 3790.343301 4653.554825 0.904700489 0.968220102 0.981092682 0.963455009 0.859483801 0.848728182 0.910342428 0.901805157 0.81450492 1 12.18411749 -5.76814981 24.99089615 0.957754692 0.880010663 0.174513107 0.053480424 104.2343495 388189.4219 0.005896 0.010865569 1.71E-06 5.76814981 -0.077744029 S(ph)SSMSSIDLVSASDDVHR ddPTM_HeLa_CUDC101_4h_R1 1 SSSMSSIDLVSASDDVHR 18 0 A0A2U3TZL3;Q9Y5P4;Q9Y5P4-3;A0A0A0MRE4;A0A2R8YFA1 A0A2U3TZL3 COL4A3BP Collagen type IV alpha-3-binding protein 1 0 S(0.332)S(0.332)S(0.332)MS(0.004)SIDLVSASDDVHR 159.72 1.84E-05 13881000 1497.5 938.61 1036.4 1061.2 2362.6 1987.3 1896.2 1602.6 1398.3 1102.7 TRUE FALSE FALSE 1321.96532 967.5274616 1092.430919 1104.480323 2188.315705 1949.395564 1969.337069 1785.033506 1340.661482 1096.141091 1.206017483 0.882666902 0.996615242 1.007607809 1.996381417 1.778416646 1.796609109 1.628470568 1.223073829 1 10.09821779 -5.768088853 24.99963113 1.067672181 1.798189951 0.893717549 0.126186668 36.11343648 135774.0548 0.019297611 0.03556982 1.71E-06 5.768088853 0.73051777 S(ph)SPEQPRPSTSK ddPTM_HeLa_CUDC101_4h_R1 3 SSPEQPRPSTSK 12 1 P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-4;H3BVD2;P29590-11;P29590-12;P29590-13;H3BT57;H3BUJ5;H3BRN3;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 1 0 S(0.909)S(0.091)PEQPRPSTSK;S(0.992)S(0.008)PEQPRPSTSK;S(0.707)S(0.293)PEQPRPSTSK ;; 190.34 2.00E-10 701124700 19510.5 16765.3 18183.4 17301.5 17462.7 16173.5 17035.3 15197 17566.8 17959.8 TRUE FALSE FALSE 17223.50877 17281.81902 19166.44961 18007.12995 16174.51141 15865.01743 17692.35723 16926.96505 16842.68907 17852.97431 0.964741699 0.968007836 1.073571791 1.008634732 0.905984131 0.888648421 0.991003343 0.948131373 0.943410816 1 14.12387683 -5.767991773 24.99990567 0.990782778 0.934353825 0.333347006 0.041220658 145.6772723 555817.0924 0.006073698 0.011200627 1.71E-06 5.767991773 -0.056428953 LEDNDSAAS(ph)DPDAETTAR ddPTM_HeLa_CUDC101_4h_R1 1 LEDNDSAASDPDAETTAR 18 0 Q9BYV8-5;Q9BYV8-2;Q9BYV8;F8WF85;C9J6R3;C9J9X8;C9JCX6;C9JXA0 Q9BYV8-5 CEP41 Centrosomal protein of 41 kDa 1 0 LEDNDS(0.047)AAS(0.709)DPDAET(0.122)T(0.122)AR 127.01 7.33E-05 12489000 1124.1 994.08 1114.6 1050.9 1386.4 1204.7 1048.6 1265.2 1371.2 1299.8 TRUE FALSE FALSE 992.334702 1024.706427 1174.858647 1093.760244 1284.128034 1181.722355 1089.044853 1409.225254 1314.678556 1292.068732 0.768020058 0.793074239 0.909284946 0.846518624 0.993854276 0.914597131 0.842869134 1.090673599 1.017498933 1 10.3354671 -5.767919567 24.99729344 0.878611535 0.948817764 0.10920699 0.094915924 299.8287956 1156593.631 0.015729627 0.029011999 1.71E-06 5.767919567 0.07020623 SKTDNSSLSS(ph)PLNPK ddPTM_HeLa_CUDC101_4h_R1 1 SKTDNSSLSSPLNPK 15 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 0 SKTDNSSLS(0.186)S(0.814)PLNPK 116.96 0.00069095 15519000 4104.6 4304.8 4413.9 4415.4 4529.9 4429 3467.6 1255.2 4019.2 5149.1 TRUE FALSE FALSE 3623.46501 4437.425786 4652.528785 4595.479097 4195.738302 4344.524204 3601.346494 1398.086894 3853.526875 5118.472924 0.707919152 0.866943296 0.908968134 0.897822293 0.819724626 0.848793042 0.70359784 0.273145314 0.752866515 1 12.32149774 -4.188960658 1.790424308 0.863310303 2.42E-15 0.832901885 0.077712084 0.418441781 1.149127163 0.015250048 0.64465477 6.47E-05 4.188960658 -0.863310303 down QESRPGEWLVR ddPTM_HeLa_CUDC101_4h_R1 1 QESRPGEWLVR 11 1 E9PI87;Q9BUP3;Q9BUP3-3 E9PI87 HTATIP2 Oxidoreductase HTATIP2 0 0 104.07 0.012281 5422700 3586.4 3748.2 3465.4 3419.2 3700 3421.5 3234.1 3086.1 3764.6 3769.6 FALSE FALSE TRUE 3166.007629 3863.677599 3652.750006 3558.649755 3427.058371 3356.240588 3358.84032 3437.40915 3609.421595 3747.178252 0.844904463 1.031089887 0.974800173 0.949687876 0.914570416 0.895671453 0.896365237 0.917332702 0.963237229 1 11.87158889 -5.593462481 4.875765063 0.939124144 0.902765159 0.16116782 0.048290007 0.503466715 22.70372333 0.009636 0.019784534 2.55E-06 5.593462481 -0.036358985 EEPSQNDIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 EEPSQNDISPK 11 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 EEPS(0.001)QNDIS(0.999)PK;EEPSQNDIS(1)PK;EEPS(0.03)QNDIS(0.97)PK;EEPS(0.001)QNDIS(0.999)PK ;;; 175.01 4.86E-07 456638500 11994.16 11365.8 11670.3 11691.22 8722.9 9503.33 9554.95 8085.74 9741.44 12173.5 TRUE FALSE FALSE 10588.22275 11715.96683 12301.23172 12168.03849 8079.429045 9322.069814 9923.487622 9006.187958 9339.89372 12101.09148 0.874980803 0.968174387 1.016539024 1.005532311 0.667661182 0.770349503 0.820048971 0.74424592 0.771822421 1 13.56284956 -5.767910118 24.99998199 0.952189694 0.756951081 0.583616062 0.077663505 66.08954773 255341.0085 0.009614915 0.017734095 1.71E-06 5.767910118 -0.195238613 S(ph)YSPDGKES(ph)PSDK ddPTM_HeLa_CUDC101_4h_R1 1 SYSPDGKESPSDK 13 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 2 0 S(0.968)YS(0.032)PDGKES(0.885)PS(0.115)DK 153.75 7.63E-07 0 1925.3 2110.3 2065.2 1935.9 1836.9 1520.9 1373.7 2127.9 1806 2292 TRUE FALSE FALSE 1699.619253 2175.315842 2176.850959 2014.85437 1701.395547 1491.891366 1426.684069 2370.131535 1731.555916 2278.367082 0.745981306 0.954769694 0.955443474 0.884341415 0.746760941 0.654807286 0.626187097 1.040276413 0.759998654 1 11.15378449 -5.767901747 8.044436948 0.890118706 0.748744764 0.156206654 0.129263429 0.162519024 77.50965324 0.020159217 0.038055784 1.71E-06 5.767901747 -0.141373942 QEVPSWLENMAYEHHYK ddPTM_HeLa_CUDC101_4h_R1 2 QEVPSWLENMAYEHHYK 17 0 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;F6S8Q4;A0A2R8Y645;O00571;O00571-2;A0A2U3TZJ9;A0A0D9SFB3;A0A0D9SF53;A0A0D9SG12;A0A2R8YF78;A0A2R8YDT5;A0A2R8Y7T2;A0A0J9YVQ7;O15523-2;O15523;A0A087WVZ1 A0A2R8Y5G6 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 0 ; ; 64.476 0.015871 22232000 7259 6013.5 5660.6 5905.1 6275.8 6454.5 5268.9 5755.7 6345.1 6757.1 FALSE FALSE TRUE 6408.111024 6198.768807 5966.629158 6145.935502 5812.846737 6331.391166 5472.123238 6410.905623 6083.552292 6716.908469 0.954026849 0.922860396 0.888299906 0.914994678 0.865405084 0.942604949 0.814678846 0.954442904 0.90570719 1 12.71358165 -7.518797632 0.662743956 0.99297297 0.889671623 0.114140272 0.046524237 0.312691583 0.303043468 0.010605348 0.010475696 3.03E-08 7.518797632 -0.103301347 EIS(ph)PGSGPGEIR ddPTM_HeLa_CUDC101_4h_R1 2 EISPGSGPGEIR 12 0 O43491;O43491-4;E9PHY5;E9PK52;H0Y5B0;Q6R5J7;E9PMV8;E9PMG5 O43491 EPB41L2 Band 4.1-like protein 2 1 0 EIS(0.989)PGS(0.011)GPGEIR;EIS(0.838)PGS(0.162)GPGEIR ; 148.13 0.00077611 171979000 4588.7 4560.7 4288 4406.6 4135.2 3915 4244.5 3960.6 4147.7 4464.3 TRUE FALSE FALSE 4050.819542 4701.209761 4519.82225 4586.320195 3830.154534 3840.327898 4408.211787 4411.458695 3976.73005 4437.746145 0.912810109 1.059368789 1.018494998 1.033479619 0.863085541 0.865378003 0.993344739 0.994076396 0.896114812 1 12.11561143 -5.767694648 24.99981575 0.97588491 0.929026914 0.154978196 0.063081887 274.813627 1098323.797 0.009854014 0.018185083 1.71E-06 5.767694648 -0.046857996 QEYDESGPSIVHR ddPTM_HeLa_CUDC101_4h_R1 2 QEYDESGPSIVHR 13 0 P60709;Q6S8J3;A5A3E0;A0A2R8YFE2;P0CG38;P0CG39;Q9BYX7;P63261 P60709;P63261 ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ; ; 180.3 2.16E-08 617570000 15626.4 7838.5 8407.4 7730.3 12465.4 11547.8 11412.5 10915 13695.7 11497.2 FALSE FALSE TRUE 13794.69708 8079.994894 8861.929475 8045.575047 11545.85228 11327.54495 11852.68395 12157.51948 13131.15745 11428.81414 1.207010361 0.706984539 0.775402361 0.703972866 1.010240619 0.991139134 1.03708782 1.063760363 1.148951876 1 13.4803881 -10.62354316 9.138296544 0.88689825 1.013623068 0 0.176017121 13063.81571 63444.96778 29432.15442 0.028479355 2.38E-11 10.62354316 0.126724818 QEYDESGPSIVHRK ddPTM_HeLa_CUDC101_4h_R1 1 QEYDESGPSIVHRK 14 1 P60709;Q6S8J3;A5A3E0;A0A2R8YFE2;P0CG38;P0CG39;Q9BYX7;P63261 P60709;P63261 ACTB;POTEE;POTEF;POTEI;POTEJ;POTEKP;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 79.744 0.018141 16843000 5175.4 4026.2 3817.6 3764.6 7874.8 6386.3 6319.7 7569.5 6608.2 4057.1 FALSE FALSE TRUE 4568.747457 4150.24245 4023.991004 3918.13666 7293.891693 6264.491968 6563.452946 8431.181283 6335.807199 4032.968189 1.132849862 1.029078896 0.99777405 0.971526795 1.808566632 1.553320451 1.627449719 2.090564787 1.571003515 1 11.97762631 -5.76071324 24.99997764 1.050276846 1.744319731 0.681684332 0.215421131 5.080295539 174895.5819 0.020109246 0.03839376 1.73E-06 5.76071324 0.694042886 RPAAAAAAGSAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 8 RPAAAAAAGSASPR 14 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 RPAAAAAAGSAS(1)PR;RPAAAAAAGS(0.151)AS(0.849)PR;RPAAAAAAGS(0.007)AS(0.993)PR;RPAAAAAAGS(0.018)AS(0.982)PR;RPAAAAAAGSAS(1)PR;RPAAAAAAGSAS(1)PR;RPAAAAAAGS(0.034)AS(0.966)PR;RPAAAAAAGS(0.01)AS(0.99)PR ;;;;;;; 199.61 2.70E-16 1026789900 12158.72 10406.95 9435.71 10253.28 8880.91 9357.36 8211.61 8354.51 9761.85 10008.25 TRUE FALSE FALSE 10733.49327 10727.57579 9945.833024 10671.45308 8225.782963 9178.883948 8528.334548 9305.553648 9359.462411 9948.720484 1.078881781 1.078286983 0.999709766 1.072645783 0.82681818 0.922619543 0.857229285 0.935351804 0.940770467 1 13.28029528 -5.767642637 24.99989499 1.040620764 0.886136086 0.6551972 0.050308613 52.77277291 212681.7834 0.006272714 0.01157934 1.71E-06 5.767642637 -0.154484678 S(ph)SPAPHSGPCPSR ddPTM_HeLa_CUDC101_4h_R1 2 SSPAPHSGPCPSR 13 0 P85299-2;P85299-4;P85299-3;P85299;P85299-5 P85299-2 PRR5 Proline-rich protein 5 1 0 S(0.5)S(0.5)PAPHSGPCPSR;S(0.5)S(0.5)PAPHSGPCPSR ; 109.55 0.0030571 5952500 1687.57 1055.29 1231.75 1064.87 1889.59 1658.17 1574.13 956.53 1537.03 1156.14 TRUE FALSE FALSE 1489.755603 1087.802234 1298.342131 1108.300001 1750.19871 1626.54317 1634.844721 1065.417509 1473.672973 1149.263228 1.296270138 0.946521395 1.129716935 0.964356968 1.522887593 1.415292102 1.422515471 0.927043938 1.282276277 1 10.16649356 -5.767198574 24.99997966 1.115226814 1.335787491 0.249059201 0.184746651 154.3383821 669968.0453 0.027757251 0.051315757 1.71E-06 5.767198574 0.220560677 QFEDELHPDLK ddPTM_HeLa_CUDC101_4h_R1 1 QFEDELHPDLK 11 0 Q9Y3C6 Q9Y3C6 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 0 0 96.334 0.016055 11386000 9011.9 6710.3 7645 7974.7 9067.6 8092.7 6685.9 7891.5 8179.5 8907.2 FALSE FALSE TRUE 7955.538743 6917.036389 8058.311825 8299.942736 8398.701213 7938.345231 6943.777403 8789.836461 7842.337548 8854.219578 0.898502536 0.781213559 0.910109779 0.937399695 0.948553527 0.896560692 0.784233703 0.992728538 0.885717536 1 13.11214944 -8.902242311 0.904096381 0.995754672 0.891783236 0 0.071724277 0.526748622 0.830746155 0.032273515 0.012301143 1.25E-09 8.902242311 -0.103971435 QFHLTDDDLLR ddPTM_HeLa_CUDC101_4h_R1 1 QFHLTDDDLLR 11 0 E9PGM4;Q04446 E9PGM4 GBE1 "1,4-alpha-glucan-branching enzyme" 0 0 173.04 6.03E-07 4403200 1458.8 1455.7 958.85 990.01 1560.9 1424.4 1296.7 1144.6 1263.8 1328.9 FALSE FALSE TRUE 1287.801675 1500.548392 1010.688331 1030.386887 1445.755517 1397.231943 1346.714153 1274.896637 1211.705629 1320.995644 0.974872008 1.135922286 0.765095885 0.780007786 1.094443819 1.057711242 1.019469034 0.965102832 0.917266938 1 10.36740999 -3.896301908 16.77948898 0.98263548 0.001445474 0 0.116622182 22338543.65 14667676.08 0.015597741 828333800.8 0.000126969 3.896301908 -0.981190006 EELSHS(ph)PEPCTK ddPTM_HeLa_CUDC101_4h_R1 1 EELSHSPEPCTK 12 0 P41229-4;P41229-3;P41229-2;P41229-5;P41229 P41229-4 KDM5C Lysine-specific demethylase 5C 1 0 EELSHS(1)PEPCTK 106.76 0.0042125 20681000 6558.6 5362.7 5595.5 5236.5 4685.1 4400.8 4950.2 3490.4 5668 5143.9 TRUE FALSE FALSE 5789.81085 5527.918431 5898.009655 5450.067104 4339.489507 4316.862072 5141.130872 3887.733027 5434.362641 5113.303854 1.132303304 1.081085456 1.153463558 1.065860207 0.848666465 0.844241257 1.005442082 0.760317231 1.062788912 1 12.32004004 -5.767179484 24.42873988 1.073275773 0.873263161 0.705719624 0.068691301 50.87552917 216517.715 0.011113492 0.020557795 1.71E-06 5.767179484 -0.200012612 SKPLAAS(ph)PKPAGLK ddPTM_HeLa_CUDC101_4h_R1 1 SKPLAASPKPAGLK 14 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.001)KPLAAS(0.999)PKPAGLK 83.894 0.017655 375660000 6376.5 5073.6 5478.4 5478.4 4830.1 4935.7 4876.8 4174.3 5221.1 5395 TRUE FALSE FALSE 5629.056336 5229.911602 5774.578875 5701.832832 4473.793146 4841.559746 5064.89981 4649.485439 5005.884048 5362.9103 1.049627165 0.975200276 1.076762159 1.063197501 0.834209952 0.90278589 0.9444312 0.866970577 0.933426772 1 12.38880041 -5.767116938 24.99997143 1.026890237 0.892314992 0.628018095 0.048267019 52.28728108 230237.5037 0.005799189 0.010725595 1.71E-06 5.767116938 -0.134575245 SEEEQS(ph)SSSVKKDETNVK ddPTM_HeLa_CUDC101_4h_R1 2 SEEEQSSSSVKKDETNVK 18 2 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2D6;G3V2Q1;P07910-4;B4DY08;G3V4W0;G3V5V7 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 SEEEQS(0.575)S(0.348)S(0.07)S(0.006)VKKDETNVK;SEEEQS(0.355)S(0.218)S(0.071)S(0.355)VKKDETNVK ; 106.38 0.00055689 88746000 8391.9 6223.6 6058 6542.1 5929 6015 5251.1 5476.5 6660.6 6257.1 TRUE FALSE FALSE 7408.214203 6415.341739 6385.513804 6808.915115 5491.629482 5900.273897 5453.636686 6099.922623 6386.047249 6219.882491 1.191053724 1.03142491 1.026629332 1.094701568 0.882915311 0.948615011 0.876807029 0.980713483 1.026715096 1 12.60267161 -5.767012608 24.9962898 1.082401857 0.920898174 0.555674925 0.059405095 84.85035722 380561.3369 0.011494446 0.021264235 1.71E-06 5.767012608 -0.161503683 HASSS(ph)PES(ph)PKPAPAPGSHR ddPTM_HeLa_CUDC101_4h_R1 1 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HAS(0.284)S(0.333)S(0.393)PES(0.989)PKPAPAPGSHR 55.744 0.027961 21925000 1699.5 1392.9 1200.9 1338.7 2440.6 1797.7 1960.5 1801.1 2097.3 1816.3 TRUE FALSE FALSE 1500.287186 1435.813598 1265.824287 1393.297972 2260.5618 1763.411868 2036.117142 2006.129944 2010.848406 1805.496567 0.830955436 0.79524582 0.701094818 0.771697935 1.252044364 0.97669079 1.127732492 1.111123655 1.113737042 1 10.81817996 -5.766944759 24.99989056 0.880367797 1.107656944 0.476855872 0.126816155 94.92353006 431049.1998 0.01825388 0.03378336 1.71E-06 5.766944759 0.227289147 KVS(ph)VSESNVLLDEEVLTDPK ddPTM_HeLa_CUDC101_4h_R1 1 KVSVSESNVLLDEEVLTDPK 20 1 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 KVS(0.333)VS(0.333)ES(0.333)NVLLDEEVLTDPK 77.08 0.0028158 16513000 5617.3 4364.3 4768.7 4659.2 7659 7101.9 6906.9 5388.9 4251.1 4616.7 TRUE FALSE FALSE 4958.848609 4498.75891 5026.510347 4849.222315 7094.010829 6966.44309 7173.301447 6002.350593 4075.867859 4589.239663 1.080538166 0.980284152 1.095281728 1.056650485 1.54579219 1.51799505 1.563069696 1.307918312 0.888135761 1 12.16403943 -5.766915102 24.99002079 1.040039592 1.491813632 0.872830787 0.087011774 26.84382464 122510.1383 0.010372599 0.019195381 1.71E-06 5.766915102 0.45177404 QGCDCECLGGGR ddPTM_HeLa_CUDC101_4h_R1 1 QGCDCECLGGGR 12 0 Q9NRX4-2;Q9NRX4 Q9NRX4-2 PHPT1 14 kDa phosphohistidine phosphatase 0 0 109.39 0.032713 2143900 775.52 928 547.85 760.4 894.07 707.85 600.75 828.1 873.01 447.73 FALSE FALSE TRUE 684.6147212 956.59058 577.4684282 791.4123987 828.1162373 694.3489406 623.9211287 922.3675567 837.0241583 445.066882 1.538228857 2.149318717 1.297486853 1.778187573 1.860655714 1.56010022 1.401859257 2.072424604 1.880670506 1 8.797878342 -8.606880861 0.690004743 1.009213144 1.710054733 0 0.371438651 0.399784402 0.382663051 0.140797095 0.057695462 2.47E-09 8.606880861 0.70084159 SSS(ph)PHDKNLPQK ddPTM_HeLa_CUDC101_4h_R1 2 SSSPHDKNLPQK 12 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.13)S(0.13)S(0.74)PHDKNLPQK;S(0.01)S(0.01)S(0.98)PHDKNLPQK ; 76.868 0.023436 20214100 7074.7 3748.3 3903.4 4349.3 10437.6 7674 8462.4 6019.6 7020.9 5983.5 TRUE FALSE FALSE 6245.414391 3863.78068 4114.429611 4526.683253 9667.639043 7527.631236 8788.797603 6704.846932 6731.49553 5947.909876 1.050018329 0.649603098 0.691743772 0.761054446 1.625384252 1.265592686 1.477627904 1.127261016 1.131741346 1 12.53816707 -5.766704672 24.99999805 0.948935015 1.373629874 0.59158957 0.195922325 80.85223897 383894.6123 0.03012496 0.05579947 1.71E-06 5.766704672 0.424694859 DELTES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 DELTESPK 8 0 Q8NC51-2;Q8NC51 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 DELT(0.04)ES(0.96)PK;DELT(0.141)ES(0.859)PK ; 117.02 0.0083695 163236000 17016.3 14129.5 14261.3 13895.1 9565.6 10952.2 10092.7 6103 13410.8 14370.2 TRUE FALSE FALSE 15021.67511 14564.81315 15032.30902 14461.80224 8859.964745 10743.30503 10481.97882 6797.740851 12858.00115 14284.72541 1.05159005 1.019607499 1.052334475 1.012396236 0.620240466 0.752083412 0.733789311 0.4758748 0.900122388 1 13.80218568 -5.76652011 24.83392342 1.026116226 0.659416881 0.820663285 0.08213663 27.99389105 136831.3042 0.010083478 0.018692688 1.71E-06 5.76652011 -0.366699344 QGDGK(ac)WHLVYR ddPTM_HeLa_CUDC101_4h_R1 2 QGDGKWHLVYR 11 1 Q5JX58;Q5JX59;Q5JX61;Q5JX60;Q5JX44;Q5JX52;Q5JX45;E7ENH5;A6PVH9;F2Z2V0;B0QZ18;Q99829 Q5JX58 CPNE1 Copine-1 0 1 ; QGDGK(1)WHLVYR;QGDGK(1)WHLVYR 107.34 0.0064606 5629400 2923.1 2412.5 2412.5 2804.8 2929.7 2587.5 2585.4 2721.6 2596.4 2119.4 FALSE TRUE FALSE 2580.458649 2486.826265 2542.927047 2919.191867 2713.581868 2538.147749 2685.119744 3031.415943 2489.375293 2106.793715 1.224827391 1.18038432 1.207012832 1.385608779 1.288014982 1.204744314 1.274505295 1.438876489 1.181594228 1 11.04083335 -13.52287875 0.120887744 0.023429818 1.424122771 0.436037467 0.086069525 32.55792649 0.283808191 7.674005137 0.304400408 3.00E-14 13.52287875 1.400692953 QGDTGDWIGTFLGHK ddPTM_HeLa_CUDC101_4h_R1 2 QGDTGDWIGTFLGHK 15 0 Q9Y3F4-2;Q9Y3F4 Q9Y3F4-2 STRAP Serine-threonine kinase receptor-associated protein 0 0 ; ; 149.22 0.00022106 14540000 11071.8 9473 8084 8908.6 11057.8 10393.7 9817.4 9931.1 10532.2 9967.1 FALSE FALSE TRUE 9773.980388 9764.851902 8521.045493 9271.931214 10242.08812 10195.45749 10196.06041 11061.61628 10098.05826 9907.815246 0.986491991 0.985570649 0.86003274 0.935819955 1.033738304 1.029031854 1.029092706 1.116453628 1.019201308 1 13.27435125 -4.24253021 0.981832646 0.980680654 1.18198128 0.467766573 0.04663154 1.549929017 1.107734497 0.007573344 0.3320098 5.72E-05 4.24253021 0.201300627 QGEEEDAEIIVK ddPTM_HeLa_CUDC101_4h_R1 1 QGEEEDAEIIVK 12 0 A0A0J9YYL3;A0A0J9YXJ8;A0A0J9YVP6;A0A0J9YXX5;Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5;Q9UHX1-2;Q9UHX1 A0A0J9YYL3 PUF60 Poly(U)-binding-splicing factor PUF60 0 0 136.7 0.0074911 3761900 1391.1 1056.1 998.16 914.95 1310.8 1139.7 960.52 1076.5 1182.9 1161.6 FALSE FALSE TRUE 1228.037367 1088.637189 1052.123549 952.2656158 1214.104895 1117.962121 997.5675782 1199.044409 1134.140361 1154.690752 1.06352057 0.942795452 0.911173444 0.824693204 1.051454594 0.968191804 0.863926187 1.038411719 0.982202689 1 10.17329081 -7.244481032 22.20455572 1.02999582 0.939283757 0.178205692 0.068676377 179.7297298 235330.0539 0.011024064 0.013473361 5.70E-08 7.244481032 -0.090712063 NSPEDLGLS(ph)LTGDSCK ddPTM_HeLa_CUDC101_4h_R1 1 NSPEDLGLSLTGDSCK 16 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 NSPEDLGLS(0.748)LT(0.248)GDS(0.004)CK 86.488 0.0028902 0 767.4 674.38 604.8 641.89 988.38 907.88 779.36 786.93 756.02 715.05 TRUE FALSE FALSE 677.4465353 695.1568485 637.4973174 668.0690487 915.4691765 890.5637016 809.4201763 876.5109303 724.8565356 710.7968508 0.953080384 0.977996523 0.896876958 0.939887463 1.28794771 1.252908902 1.138750369 1.233138455 1.019780173 1 9.473293479 -5.766377668 24.99965496 0.968220888 1.223563982 0.882507888 0.047092744 29.55824285 149637.0159 0.006993552 0.01297167 1.71E-06 5.766377668 0.255343094 QGGLGPMNIPLVSDPK ddPTM_HeLa_CUDC101_4h_R1 1 QGGLGPMNIPLVSDPK 16 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 0 0 133.15 0.0021468 5337800 1898.1 1753.2 1563.8 1630.4 1564.2 1195 1636 1045.9 1742.4 2394.9 FALSE FALSE TRUE 1675.607595 1807.214014 1648.343758 1696.894759 1448.812082 1172.207366 1699.101068 1164.961028 1670.577535 2380.655028 0.703843092 0.759124692 0.69239085 0.712784817 0.608577079 0.492388587 0.713711583 0.489344745 0.701730202 1 11.21714286 -13.52287875 0.11601203 2.244898434 0.436178423 0.306453824 0.114238271 26.03314665 0.219638356 7.57239252 0.338100569 3.00E-14 13.52287875 -1.808720011 GGVTGS(ph)PEASISGSK ddPTM_HeLa_CUDC101_4h_R1 5 GGVTGSPEASISGSK 15 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GGVT(0.025)GS(0.975)PEASISGSK;GGVTGS(1)PEASISGSK;GGVT(0.205)GS(0.795)PEASISGSK;GGVT(0.001)GS(0.993)PEAS(0.006)ISGSK;GGVT(0.083)GS(0.478)PEAS(0.439)ISGSK ;;;; 279.71 1.26E-86 3022477200 19789.4 29712.2 16486.92 19089.4 16274.67 16865.4 15885.55 13258.14 16944.2 19937.9 TRUE FALSE FALSE 17469.71653 30627.59766 17378.25277 19867.94824 15074.12002 16543.72059 16498.26098 14767.39307 16245.7529 19819.30848 0.881449347 1.545341387 0.876834466 1.00245416 0.760577496 0.834727438 0.832433735 0.745101328 0.819693226 1 14.27461901 -5.766332948 24.97372504 0.990878222 0.798977215 0.24388643 0.192017227 152.2174254 776828.0182 0.027580499 0.051164457 1.71E-06 5.766332948 -0.191901007 QRS(ph)PAPGSPDEEGGAEAPAAGIR ddPTM_HeLa_CUDC101_4h_R1 2 QRSPAPGSPDEEGGAEAPAAGIR 23 1 H0YL34;A0A075B7B1;O15061-2;O15061 H0YL34 SYNM Synemin 1 0 QRS(1)PAPGSPDEEGGAEAPAAGIR;QRS(1)PAPGSPDEEGGAEAPAAGIR ; 164.18 4.83E-16 26594000 1735.39 1366.5 1389.2 1386.76 1327.44 1273.39 1192.04 1068.14 1485 1391.35 TRUE FALSE FALSE 1531.970215 1408.600245 1464.304354 1443.318067 1229.517396 1249.102207 1238.017382 1189.73274 1423.787671 1383.074188 1.107655849 1.018456029 1.058731604 1.043557952 0.888974291 0.903134639 0.895120011 0.86020891 1.029436948 1 10.43366283 -5.766293707 6.80289363 1.049705521 0.888135823 0.874438174 0.028918468 0.047657316 10.65877364 0.006062548 0.01153682 1.71E-06 5.766293707 -0.161569698 SRS(ph)PHEAGFCVYLK ddPTM_HeLa_CUDC101_4h_R1 1 SRSPHEAGFCVYLK 14 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 0 S(0.062)RS(0.938)PHEAGFCVYLK 69.602 0.026509 22514000 1914.5 1675.6 1195.4 1404.7 2561.3 1834.8 2046 1838.9 2101.6 1889.1 TRUE FALSE FALSE 1690.085212 1727.22325 1260.02694 1461.989738 2372.358002 1799.804247 2124.914905 2048.232943 2014.971158 1877.863549 0.90000427 0.91978102 0.670989615 0.778538855 1.263328213 0.958431856 1.131559802 1.090725119 1.073012552 1 10.87487652 -5.766249459 24.99999847 0.914557839 1.101580469 0.416662196 0.125755545 104.8246268 544821.4201 0.01855045 0.034424245 1.71E-06 5.766249459 0.187022629 QGMDLSANQDEETDQETFQLEIDRDTK ddPTM_HeLa_CUDC101_4h_R1 2 QGMDLSANQDEETDQETFQLEIDRDTK 27 1 Q16658 Q16658 FSCN1 Fascin 0 0 ; ; 177.18 5.31E-14 17764000 1538.2 1018.92 972.86 1141.07 1340.67 1095.99 1130.49 1108.64 1424.97 1287.51 FALSE FALSE TRUE 1357.894528 1050.311717 1025.455754 1187.607767 1241.771445 1075.085817 1174.093378 1234.843096 1366.232133 1279.851833 1.060977914 0.820651024 0.801230055 0.92792598 0.970246253 0.84000803 0.917366642 0.964832853 1.067492422 1 10.32176109 -7.271637797 24.80369982 1.028795128 0.891675363 0.591024958 0.057233082 353.1734526 858955.8629 0.010176933 0.011708183 5.35E-08 7.271637797 -0.137119765 LEPVT(ph)S(ph)S(ph)LPNFSS(ph)T(ph)SDK ddPTM_HeLa_CUDC101_4h_R1 1 LEPVTSSLPNFSSTSDK 17 0 Q8WXI7 Q8WXI7 MUC16 Mucin-16 5 0 LEPVT(0.985)S(0.874)S(0.828)LPNFS(0.463)S(0.795)T(0.727)S(0.328)DK 40.211 0.0033275 0 1225.6 1245 1267 1207.9 1032.8 890.14 1116.6 1134.1 1308.9 1196.5 TRUE FALSE FALSE 1081.937026 1283.356974 1335.497852 1257.163383 956.6124016 873.1620626 1159.667636 1263.20136 1254.946588 1189.383165 0.909662301 1.079010543 1.122849131 1.056987706 0.804292872 0.734130168 0.975016017 1.062064268 1.055123887 1 10.21599784 -5.76623924 24.99998433 0.98650673 0.888261157 0.232496448 0.105569985 181.7507102 946651.3123 0.016960922 0.031468849 1.71E-06 5.76623924 -0.098245574 RQS(ph)SSYDDPWK ddPTM_HeLa_CUDC101_4h_R1 1 RQSSSYDDPWK 11 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4;H0YCF0;H7C1V2;Q96D71-2 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 0 RQS(0.43)S(0.203)S(0.349)Y(0.018)DDPWK 64.224 0.03903 16353000 5363.3 3731 3637.2 3919.1 2963.9 3287.1 3038.7 2258.1 2771.2 3430.7 TRUE FALSE FALSE 4734.622104 3845.947688 3833.838034 4078.937838 2745.259002 3224.404044 3155.903677 2515.152976 2656.969963 3410.294044 1.388332514 1.127746651 1.124195739 1.196066317 0.804991877 0.945491504 0.925405152 0.737517922 0.779102895 1 11.73568042 -5.766218874 24.99931796 1.178874054 0.865079698 0.294910404 0.164794683 75.13791827 393014.2974 0.022453352 0.04166872 1.71E-06 5.766218874 -0.313794357 AGGPTT(ph)PLSPTR ddPTM_HeLa_CUDC101_4h_R1 2 AGGPTTPLSPTR 12 0 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 1 0 AGGPT(0.21)T(0.789)PLS(0.001)PTR;AGGPT(0.032)T(0.968)PLSPTR ; 130.69 0.0075157 164810000 8037.9 7180.3 7379.4 7026.4 6829.1 6730.6 6499.8 5569.5 7313.7 7256 TRUE FALSE FALSE 7095.709547 7401.516532 7778.352685 7312.966963 6325.330898 6602.225019 6750.499463 6203.509367 7012.22619 7212.840989 0.983760706 1.026158284 1.078403461 1.013881628 0.876954158 0.915343209 0.935900219 0.860064623 0.972186438 1 12.8163519 -5.76615322 24.9987164 1.00349135 0.901144999 0.735293041 0.033611565 52.88826073 280482.1579 0.005183906 0.009624451 1.71E-06 5.76615322 -0.102346352 KGLPLGSAVSS(ph)PVLFS(ph)PVGR ddPTM_HeLa_CUDC101_4h_R1 2 KGLPLGSAVSSPVLFSPVGR 20 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 2 0 KGLPLGS(0.004)AVS(0.625)S(0.663)PVLFS(0.708)PVGR;KGLPLGS(0.002)AVS(0.131)S(0.899)PVLFS(0.967)PVGR ; 98.491 0.00048806 72010000 8415.4 6489.7 5973.5 6596.5 7883.7 7025.9 6060.6 1922.27 7862.8 7689.7 TRUE FALSE FALSE 7428.959569 6689.639965 6296.445479 6865.533783 7302.135158 6891.892663 6294.359372 2141.093447 7538.692056 7643.961322 0.971872993 0.87515356 0.823714984 0.89816438 0.955281542 0.901612707 0.823442075 0.280102601 0.986228441 1 12.90010476 -4.186534851 1.995409197 0.954809407 2.89E-11 0.918893672 0.056870477 0.212158781 0.760215722 0.009808359 0.393355941 6.51E-05 4.186534851 -0.954809407 down ETIHLPAS(ph)SPHPPPFP ddPTM_HeLa_CUDC101_4h_R1 1 ETIHLPASSPHPPPFP 16 0 Q5SZC3;Q5SZC6;Q9Y2T3-3 Q5SZC3 GDA 1 0 ETIHLPAS(0.5)S(0.5)PHPPPFP 78.95 0.011413 10882000 2658.4 2309.6 2365.5 2120.9 2999.4 2518.2 2506.6 2091.8 2604 2545.1 TRUE FALSE FALSE 2346.786382 2380.756038 2493.386085 2207.399469 2778.140238 2470.169531 2603.280402 2329.922057 2496.662018 2529.961632 0.927597617 0.941024563 0.985543043 0.872503141 1.098095798 0.9763664 1.02898019 0.920931775 0.986837898 1 11.30489979 -5.766089515 24.99984174 0.958761196 1.005604926 0.187425359 0.053905318 170.7117247 917780.2822 0.007796004 0.014483027 1.71E-06 5.766089515 0.046843731 QGPGPGGPK(ac)GGK ddPTM_HeLa_CUDC101_4h_R1 2 QGPGPGGPKGGK 12 1 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 1 ; QGPGPGGPK(1)GGK;QGPGPGGPK(1)GGK 142 0.00026539 3722700 1960.25 1644.92 2070.44 1925.49 2187.4 1853.52 2036.73 2155.36 1829.79 1752.28 FALSE TRUE FALSE 1730.472467 1695.598035 2182.374249 2004.019805 2026.03986 1818.167194 2115.287358 2400.71747 1754.365282 1741.857361 0.993463934 0.97344253 1.252900667 1.150507412 1.163149122 1.043809462 1.214386095 1.378251471 1.007180795 1 10.76641077 -1 0.237886579 0.976570987 3.034073005 0.58734435 0.082872074 24.39700823 0.300109169 0.053038953 19.97925579 0.1 1 2.057502018 RNPNTQLSTS(ph)FDETYIKK ddPTM_HeLa_CUDC101_4h_R1 1 RNPNTQLSTSFDETYIKK 18 2 Q9P242 Q9P242 NYAP2 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 1 0 RNPNT(0.001)QLS(0.023)T(0.066)S(0.906)FDET(0.004)YIKK 84.159 0.0062232 15496000 1184.7 1240.6 1122.3 1066.4 1083.3 1089.4 1004 917.85 1019.6 1054.9 TRUE FALSE FALSE 1045.831262 1278.821416 1182.974933 1109.892401 1003.387117 1068.62151 1042.724616 1022.334334 977.5716564 1048.625408 0.99733542 1.219521677 1.128119654 1.058426005 0.956859437 1.019068871 0.994372832 0.974928059 0.932241055 1 10.03428369 -5.766026751 24.97298663 1.031622517 0.989223523 0.119133075 0.077173533 287.9919293 1567795.037 0.012225473 0.022714347 1.71E-06 5.766026751 -0.042398994 RPS(ph)PGEMR ddPTM_HeLa_CUDC101_4h_R1 2 RPSPGEMR 8 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-3;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 0 RPS(1)PGEMR;RPS(1)PGEMR ; 88.155 0.016937 63384000 1951.19 1974.18 1622.07 1866.39 1637.29 1519.93 1618.24 1596.87 1579.42 2040 TRUE FALSE FALSE 1722.474466 2035.002146 1709.764011 1942.509451 1516.510379 1490.939868 1680.656059 1778.651226 1514.315639 2027.865989 0.849402512 1.003519047 0.843134615 0.957908196 0.7478356 0.735226033 0.828780633 0.877104915 0.74675331 1 10.9857466 -5.766017979 24.99914745 0.928116347 0.795060582 0.223802123 0.084693213 82.4191198 450011.4465 0.01082052 0.020099772 1.71E-06 5.766017979 -0.133055765 EVMESAVGNSS(ph)GSGQNEESPR ddPTM_HeLa_CUDC101_4h_R1 1 EVMESAVGNSSGSGQNEESPR 21 0 Q9NVF7 Q9NVF7 FBXO28 F-box only protein 28 1 0 EVMESAVGNS(0.265)S(0.614)GS(0.117)GQNEES(0.004)PR 187.04 2.36E-13 29063000 2092.1 1885.4 1692.2 1731 1491.9 1542.3 1468.8 1443.7 1897.5 1481.2 TRUE FALSE FALSE 1846.867209 1943.486939 1783.685451 1801.597662 1381.845509 1512.883197 1525.452108 1608.044972 1819.284247 1472.389757 1.254333101 1.319954129 1.211422073 1.223587473 0.938505245 1.027501849 1.036038251 1.092132681 1.235599636 1 10.5239439 -5.765845121 24.99556804 1.153630478 1.024719585 0.418960944 0.094060101 140.7847937 798735.9552 0.018572474 0.034516298 1.71E-06 5.765845121 -0.128910893 RRS(ph)PSPPPT(ph)RR ddPTM_HeLa_CUDC101_4h_R1 1 RRSPSPPPTRR 11 3 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 RRS(0.683)PS(0.317)PPPT(1)RR 112.75 0.0076308 5898900 1144.5 801.6 1035.9 846.39 1235.8 977.26 999.92 943.28 1058.9 972.75 TRUE FALSE FALSE 1010.343445 826.2963459 1091.903887 880.9094426 1144.637496 958.6203937 1038.487249 1050.659182 1015.251694 966.9640397 1.044861446 0.854526448 1.12920837 0.91100538 1.183743603 0.991371296 1.073966773 1.086554555 1.049937383 1 9.917318428 -5.765762392 24.99828695 1.009905456 1.076589044 0.191642076 0.083624173 159.5740672 922759.9774 0.011024944 0.020501017 1.71E-06 5.765762392 0.066683588 ELLS(ph)PGVK ddPTM_HeLa_CUDC101_4h_R1 1 ELLSPGVK 8 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 ELLS(1)PGVK 107.55 0.012726 10660000 2821.3 2794.6 2485.1 2510.9 3666.4 3869.2 2975.9 2142.9 3738.7 3025.6 TRUE FALSE FALSE 2490.591491 2880.698314 2619.452023 2613.305355 3395.936976 3795.401457 3090.68146 2386.839074 3584.589204 3007.603597 0.828098322 0.957805183 0.870943241 0.868899531 1.129117208 1.261935403 1.027622611 0.793601616 1.191842305 1 11.55439872 -5.765721419 24.99991525 0.913072123 1.066170614 0.060170248 0.147065595 116.9412446 682745.6067 0.018710849 0.034799416 1.72E-06 5.765721419 0.15309849 ES(ph)PSLASR ddPTM_HeLa_CUDC101_4h_R1 3 ESPSLASR 8 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BSK9;Q8WWM7-7;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 1 0 ES(0.933)PS(0.019)LAS(0.048)R;ES(0.98)PS(0.002)LAS(0.018)R;ES(0.995)PS(0.004)LAS(0.001)R ;; 114.4 0.0095757 116500000 11680.8 9136.7 8916.8 9230.3 7800.5 8310 7362.5 5711.3 9484.9 9257.6 TRUE FALSE FALSE 10311.59433 9418.190897 9398.86918 9606.751531 7225.072656 8151.500595 7646.474091 6361.451306 9093.928407 9202.535383 1.120516673 1.023434359 1.02133475 1.043924433 0.785117618 0.885788563 0.830909502 0.691271594 0.988198146 1 13.16781568 -5.765707476 24.62695567 1.051669808 0.806854255 0.793014449 0.058186662 30.10813861 173725.9786 0.009332349 0.017362134 1.72E-06 5.765707476 -0.244815553 EIS(ph)DDEAEEEKGEK ddPTM_HeLa_CUDC101_4h_R1 2 EISDDEAEEEKGEK 14 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 1 0 EIS(1)DDEAEEEKGEK;EIS(1)DDEAEEEKGEK ; 234.22 1.11E-42 84618000 4438.6 3567.8 3032.1 3559.1 2252.22 2907.18 2346.63 2264.97 3401.5 2864.1 TRUE FALSE FALSE 3918.314036 3677.719689 3196.024498 3704.255482 2086.078218 2851.730385 2437.140305 2522.805029 3261.28873 2847.064206 1.376264725 1.291758606 1.122568466 1.301079011 0.732712038 1.001638944 0.856018737 0.886107529 1.14549181 1 11.47525931 -5.765660749 24.9995773 1.194443971 0.877649238 0.666000584 0.116700749 69.04525844 408899.5228 0.023182119 0.043121119 1.72E-06 5.765660749 -0.316794734 QLVAGNS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 QLVAGNSPK 9 0 Q96EU6-2;Q96EU6 Q96EU6-2 RRP36 Ribosomal RNA processing protein 36 homolog 1 0 QLVAGNS(1)PK;QLVAGNS(1)PK;QLVAGNS(1)PK ;; 109.16 0.010641 140352000 17508.6 15071.2 15579.4 15629.8 15097.5 14432.4 13788.4 14332.7 16020.6 16199.1 TRUE FALSE FALSE 15456.26845 15535.52581 16421.66949 16267.2508 13983.7875 14157.12602 14320.22321 15964.27663 15360.22409 16102.74703 0.959852901 0.964774878 1.019805469 1.010215882 0.868410059 0.87917459 0.889303122 0.991400821 0.95388843 1 13.9750192 -5.765551749 24.99998 0.984298361 0.903810247 0.510871288 0.03718224 62.54604176 380233.9459 0.005445475 0.010138189 1.72E-06 5.765551749 -0.080488114 S(ph)RATAQKDEKCYEVFS(ph)LS(ph)QS(ph)S(ph)QR ddPTM_HeLa_CUDC101_4h_R1 1 SRATAQKDEKCYEVFSLSQSSQR 23 3 Q9HBJ0 Q9HBJ0 PLAC1 Placenta-specific protein 1 5 0 S(0.5)RAT(0.5)AQKDEKCY(0.754)EVFS(0.811)LS(0.811)QS(0.811)S(0.811)QR 41.912 0.031161 14641000 1115 626.53 1863.1 982.43 3243.6 3908.9 1930.8 1965.6 3333.9 1010.4 TRUE FALSE FALSE 984.3013902 645.8326467 1963.824822 1022.497742 3004.32609 3834.344245 2005.271603 2189.355959 3196.475231 1004.390096 0.9799991 0.643009772 1.955241126 1.018028499 2.99119446 3.817584682 1.996506747 2.179786487 3.182503734 1 9.972103992 -5.765414006 24.99182306 1.043480584 2.769236451 0.273950811 0.875587521 42.2134607 265433.825 0.081623314 0.152005645 1.72E-06 5.765414006 1.725755867 ESLCDS(ph)PHQNLSRPLLENK ddPTM_HeLa_CUDC101_4h_R1 2 ESLCDSPHQNLSRPLLENK 19 1 O15042-2;O15042;E7ET15;E7EW00;H0Y8D9;C9J5L1;U3KPT1;C9JDJ7 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 0 ES(0.146)LCDS(0.853)PHQNLS(0.001)RPLLENK;ES(0.098)LCDS(0.9)PHQNLS(0.002)RPLLENK ; 59.537 0.016002 107246000 7438.3 6747.8 5999.8 5239.9 9065.5 7527.8 7456.6 5534.6 7844.7 6021 TRUE FALSE FALSE 6566.39375 6955.69172 6324.167336 5453.605771 8396.756126 7384.219757 7744.20356 6164.636492 7521.338146 5985.186824 1.097107566 1.162151145 1.05663658 0.911183883 1.402922978 1.23374925 1.293895042 1.0299823 1.256658876 1 12.54718057 -5.765295184 24.99999513 1.049096647 1.243520922 0.264252179 0.123813017 68.0073661 440945.3003 0.015174331 0.028279291 1.72E-06 5.765295184 0.194424276 AQAVS(ph)EEEEEEEGK ddPTM_HeLa_CUDC101_4h_R1 4 AQAVSEEEEEEEGK 14 0 Q9GZR7-2;Q9GZR7;G3V529 Q9GZR7-2 DDX24 ATP-dependent RNA helicase DDX24 1 0 AQAVS(1)EEEEEEEGK;AQAVS(1)EEEEEEEGK;AQAVS(1)EEEEEEEGK;AQAVS(1)EEEEEEEGK ;;; 217.37 1.13E-24 183970200 9410 8274.7 8584.3 7956.73 6615.01 7205.6 6266.2 4468.12 6830.81 8293.5 TRUE FALSE FALSE 8306.974065 8529.633699 9048.393224 8281.239841 6127.033891 7068.165185 6507.889433 4976.75272 6549.241121 8244.169893 1.00761801 1.034626143 1.097550553 1.004496505 0.743195976 0.857353169 0.789392931 0.603669355 0.794408801 1 13.00915852 -5.765247424 22.94635581 1.01415256 0.759112817 0.598835756 0.095384494 11.38338237 68595.72279 0.009466621 0.017669169 1.72E-06 5.765247424 -0.255039743 PAS(ph)GPSSRPTS(ph)PCGK ddPTM_HeLa_CUDC101_4h_R1 1 PASGPSSRPTSPCGK 15 1 H3BRS1;Q12968;I3L3K7;H3BR83;Q12968-5;Q12968-6;Q12968-4;Q12968-3;Q12968-2 H3BRS1 NFATC3 "Nuclear factor of activated T-cells, cytoplasmic 3" 2 0 PAS(0.968)GPS(0.007)S(0.026)RPT(0.009)S(0.989)PCGK 169.02 1.20E-10 0 4844.8 2837.2 3237 2997.7 1677 1130.6 1225.5 2720.4 2792.2 2130.4 TRUE FALSE FALSE 4276.899888 2924.610769 3412.002011 3119.959163 1553.291051 1109.035689 1272.767946 3030.07934 2677.104334 2117.728286 2.019569704 1.381013225 1.611161372 1.473257539 0.733470418 0.52369121 0.601006255 1.430815917 1.264139669 1 11.04830178 -5.765219624 23.69578516 1.494598538 0.785117696 0.46033231 0.334979432 39.712391 248935.274 0.063481208 0.118435279 1.72E-06 5.765219624 -0.709480842 TPLSFTNPLHSDDS(ph)DS(ph)DERNSDGAVTQNK ddPTM_HeLa_CUDC101_4h_R1 1 TPLSFTNPLHSDDSDSDERNSDGAVTQNK 29 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 2 0 T(0.003)PLS(0.013)FT(0.011)NPLHS(0.267)DDS(0.792)DS(0.895)DERNS(0.012)DGAVT(0.006)QNK 59.628 0.0025255 15948000 1734.7 2047.8 1492 1547.4 2301.5 1902.4 2011.4 1507.2 2074.6 2022.6 TRUE FALSE FALSE 1531.361096 2110.890291 1572.662033 1610.50966 2131.72293 1866.11489 2088.980372 1678.773556 1989.08411 2010.569485 0.761655395 1.049896711 0.782197305 0.801021637 1.060258273 0.928152398 1.038999342 0.834974154 0.989313786 1 10.97338848 -5.765145345 24.9982407 0.884192466 0.968164581 0.079507915 0.10821045 172.702903 1164962.455 0.01724294 0.032151117 1.72E-06 5.765145345 0.083972115 IGEEQS(ph)PEDAEDGPPELLFIHGGHTAK ddPTM_HeLa_CUDC101_4h_R1 2 IGEEQSPEDAEDGPPELLFIHGGHTAK 27 0 Q09028-3;Q09028;Q09028-4;Q09028-2;H0YF10;H0YEU5;H0YCT5;H0YDK2 Q09028-3 RBBP4 Histone-binding protein RBBP4 1 0 IGEEQS(1)PEDAEDGPPELLFIHGGHTAK;IGEEQS(1)PEDAEDGPPELLFIHGGHTAK ; 127.4 7.24E-11 19505500 6152.2 5247.1 5349.5 5277.9 6533.7 5885.7 5628 5654.7 6143.6 5674.9 TRUE FALSE FALSE 5431.048442 5408.756932 5638.710151 5493.155575 6051.721968 5773.440079 5845.073845 6298.408191 5890.358208 5641.145442 0.962756323 0.95880473 0.999568298 0.97376599 1.072782475 1.023451733 1.036150176 1.116512286 1.044177688 1 12.46177242 -5.76509228 24.99993436 0.980925077 1.057592285 0.523972555 0.033031249 43.33807805 296602.8421 0.004004764 0.007467687 1.72E-06 5.76509228 0.076667208 EREVDEDS(ph)EPER ddPTM_HeLa_CUDC101_4h_R1 5 EREVDEDSEPER 12 1 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EREVDEDS(1)EPER;EREVDEDS(1)EPER;EREVDEDS(1)EPER;EREVDEDS(1)EPER;EREVDEDS(1)EPER ;;;; 138.55 0.0064699 91235200 7996.1 6002.24 7011.88 6950.99 5578.27 5927.69 5748.11 4742.83 6009.61 6868.41 TRUE FALSE FALSE 7058.809279 6187.1619 7390.963443 7234.481417 5166.772136 5814.629189 5969.816528 5282.734596 5761.891332 6827.556392 1.03387052 0.906204438 1.082519575 1.05960039 0.756752759 0.851641328 0.874370886 0.773737234 0.843917062 1 12.73715361 -5.765070666 24.99991051 1.01548681 0.821108479 0.535360012 0.076518556 32.61847008 224566.8856 0.007665986 0.014298411 1.72E-06 5.765070666 -0.19437833 (ac)AKIS(ph)SPTETER ddPTM_HeLa_CUDC101_4h_R1 1 AKISSPTETER 11 1 P31949 P31949 S100A11 "Protein S100-A11;Protein S100-A11, N-terminally processed" 1 0 AKIS(0.77)S(0.217)PT(0.011)ET(0.002)ER 56.956 0.0049651 6423700 1418.7 1285.9 1195.3 1245.3 1806.9 1486.6 1503.2 1472.3 1366.4 1158 TRUE FALSE FALSE 1252.402137 1325.517055 1259.921534 1296.088717 1673.608587 1458.245582 1561.178928 1639.900681 1310.076414 1151.112164 1.087993138 1.151509901 1.094525427 1.125944766 1.453905743 1.266814501 1.356235279 1.42462284 1.138096229 1 10.1688127 -5.765067605 0.43994734 1.017403519 1.475458209 0.700057351 0.080888902 0.541913378 0.159803311 0.021463565 0.10732063 1.72E-06 5.765067605 0.45805469 DQT(ph)PDENDQVVVK ddPTM_HeLa_CUDC101_4h_R1 2 DQTPDENDQVVVK 13 0 O00425;O00425-2 O00425 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 1 0 DQT(1)PDENDQVVVK;DQT(1)PDENDQVVVK ; 282.52 2.05E-102 26363000 10248.6 9115.9 8798 8551.2 8813.4 7998.1 7861 8125.1 8949.8 8532 TRUE FALSE FALSE 9047.274644 9396.750074 9273.646492 8899.954897 8163.253041 7845.549568 8164.201403 9050.028541 8580.885456 8481.251285 1.06673819 1.107943835 1.093429045 1.049368141 0.96250574 0.925046235 0.962617558 1.067062894 1.011747579 1 13.05006141 -5.765054444 24.77399646 1.044893407 0.974240071 0.379609517 0.046099063 79.36848137 543916.377 0.007650912 0.014278578 1.72E-06 5.765054444 -0.070653336 HTGPNS(ph)PDTANDGFVRL ddPTM_HeLa_CUDC101_4h_R1 3 HTGPNSPDTANDGFVRL 17 1 E7EQJ0 E7EQJ0 HNRNPH1 1 0 HT(0.001)GPNS(0.999)PDTANDGFVRL;HTGPNS(1)PDTANDGFVRL;HTGPNS(0.993)PDT(0.007)ANDGFVRL ;; 110.34 0.00055919 8916000 2565.95 3303.63 4244.16 3580.56 2844.82 3002 2355.98 3624.5 6915.6 4321.24 TRUE FALSE FALSE 2265.173231 3405.410925 4473.612127 3726.590713 2634.963296 2944.741852 2446.850938 4037.098429 6630.536041 4295.537072 0.527331785 0.792778846 1.04145583 0.867549424 0.613418823 0.685535197 0.569626311 0.939835546 1.5435872 1 12.06862281 -5.765001921 24.97146892 0.800657478 0.691457801 0.006594811 0.284880503 228.3782039 1600822.736 0.031119842 0.058062208 1.72E-06 5.765001921 -0.109199677 EPDPPDDRDAS(ph)DGEDEKPPLPPR ddPTM_HeLa_CUDC101_4h_R1 3 EPDPPDDRDASDGEDEKPPLPPR 23 2 O15357 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 EPDPPDDRDAS(1)DGEDEKPPLPPR;EPDPPDDRDAS(1)DGEDEKPPLPPR;EPDPPDDRDAS(1)DGEDEKPPLPPR ;; 77.66 0.00080126 29131800 5998.7 5072.1 4628.6 4992.5 4268.56 4432.92 4095.5 3481.26 5243.6 4976.6 TRUE FALSE FALSE 5295.541479 5228.365389 4878.836117 5196.115729 3953.676833 4348.369437 4253.464807 3877.552567 5027.456589 4946.998962 1.070455345 1.056876185 0.986221375 1.05035715 0.799207128 0.878991378 0.859807095 0.783819159 1.016263926 1 12.27233788 -5.764907746 24.99982804 1.033159549 0.836019469 0.885556199 0.035113959 22.91601572 165179.1714 0.005709895 0.010657648 1.72E-06 5.764907746 -0.19714008 S(ph)PDSVLVTASVK ddPTM_HeLa_CUDC101_4h_R1 1 SPDSVLVTASVK 12 0 O00141-5;E9PR89;O00141-4;O00141;O00141-3;O00141-2 O00141-5 SGK1 Serine/threonine-protein kinase Sgk1 1 0 S(0.997)PDS(0.003)VLVTASVK 110.38 0.0056581 2947700 1746.4 1666.9 1741.9 1777 1556.9 1506.7 1626.8 1439 1924.1 1940.2 TRUE FALSE FALSE 1541.689639 1718.255213 1836.072383 1849.473741 1442.050589 1477.962208 1689.546221 1602.809943 1844.787784 1928.659604 0.799358081 0.890906415 0.951994006 0.958942541 0.74769575 0.766315738 0.876020951 0.831048641 0.956512896 1 10.91338282 -5.764873135 24.99943562 0.909101557 0.807541424 0.469212772 0.06142643 96.04576462 699268.5571 0.012408282 0.023165442 1.72E-06 5.764873135 -0.101560133 IQITFIVEDVNDNPAT(ph)CQK ddPTM_HeLa_CUDC101_4h_R1 1 IQITFIVEDVNDNPATCQK 19 0 H7C555;E7EQG5;Q6ZTQ4-2;Q6ZTQ4 H7C555 CDHR3 Cadherin-related family member 3 1 0 IQITFIVEDVNDNPAT(1)CQK 66.122 0.028087 27404000 8215.9 7159.6 7232.9 7378.1 6491.7 6943.5 6056.2 6491.4 8115.2 6891.6 TRUE FALSE FALSE 7252.844656 7380.17879 7623.932452 7679.010809 6012.820224 6811.064306 6289.789663 7230.354737 7780.688021 6850.608457 1.058715398 1.077302671 1.112883987 1.120923909 0.877706011 0.994227644 0.918135915 1.055432489 1.135765979 1 12.74201642 -5.764490994 24.9999999 1.045424902 0.96063356 0.401887494 0.063613714 73.73039298 604035.2865 0.008877644 0.016603215 1.72E-06 5.764490994 -0.084791343 RVNNGNTAPEDSS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 2 RVNNGNTAPEDSSPAK 16 1 E9PJ27;G3V167;Q9UGN5-2;Q9UGN5 E9PJ27 PARP2 Poly [ADP-ribose] polymerase 2 1 0 RVNNGNTAPEDS(0.005)S(0.995)PAK;RVNNGNTAPEDS(0.052)S(0.948)PAK ; 133.35 0.00023319 14392800 10745.3 8442.7 8139.8 8697.1 8058.7 8224.7 7119.5 7180.2 8168.3 8433.8 TRUE FALSE FALSE 9485.752223 8702.80958 8579.86221 9051.80533 7464.225756 8067.827551 7394.1015 7997.564945 7831.599217 8383.635383 1.131460493 1.038071097 1.023405935 1.079699309 0.890332823 0.962330443 0.881968402 0.953949519 0.934153128 1 13.03336026 -5.764361243 24.99976799 1.059401983 0.922145877 0.454797018 0.056412401 38.87391682 332613.4695 0.007900747 0.014785478 1.72E-06 5.764361243 -0.137256106 ESRQESDPEDDDVKKPALQSS(ph)VVATSK ddPTM_HeLa_CUDC101_4h_R1 1 ESRQESDPEDDDVKKPALQSSVVATSK 27 3 Q9H307 Q9H307 PNN Pinin 1 0 ES(0.054)RQES(0.037)DPEDDDVKKPALQS(0.21)S(0.612)VVAT(0.059)S(0.028)K 44.304 0.034416 65547000 3185.1 3322.8 3747.1 3319 4591.7 3919 3641.8 4205 3271.7 4285.3 TRUE FALSE FALSE 2811.747406 3425.17153 3949.67956 3454.363166 4252.979439 3844.251604 3782.265446 4683.680203 3136.839141 4259.810845 0.660063911 0.804066578 0.927195996 0.810919379 0.998396312 0.902446551 0.887895163 1.099504267 0.736379913 1 12.05657365 -5.764257656 24.97673993 0.838311639 0.961076334 0.323439534 0.1036711 106.919505 947577.0693 0.020307251 0.038028327 1.72E-06 5.764257656 0.122764695 EAESLIAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 EAESLIAKK 9 1 F5GWF6;P78371-2;P78371;F8VQ14 F5GWF6 CCT2 T-complex protein 1 subunit beta 0 1 ; EAESLIAK(1)K;EAESLIAK(1)K 159.58 0.0021704 2301000 902.76 895.53 957.15 857.32 1353.88 1409.39 2149.45 8069.7 1381.03 1040.76 FALSE TRUE FALSE 796.9398413 923.1202178 1008.896424 892.2852153 1254.00697 1382.508234 2232.355007 8988.322029 1324.103359 1034.569513 0.77031058 0.892274715 0.975184762 0.862470046 1.212105087 1.336312559 2.157762217 8.687982696 1.279859248 1 10.01481487 -4.185491828 2.245681681 0.933541523 11.7032898 0.991686569 0.208614613 0.047233275 0.228629838 0.02883198 1.078680275 6.52E-05 4.185491828 10.76974828 up AQGEPVAGHES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 AQGEPVAGHESPK 13 0 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;D6RHZ5;H7BXG7;O94979-7;O94979-6;O94979-10;O94979-4;H0YAB3 D6REX3 SEC31A Protein transport protein Sec31A 1 0 AQGEPVAGHES(1)PK 96.561 0.0076666 321000000 7056.9 5631.2 5950.2 5565.1 4021.8 4627.6 4052.6 3746.8 4815.8 4363.1 TRUE FALSE FALSE 6229.70088 5804.690597 6271.88581 5792.068832 3725.119827 4539.33624 4208.91014 4173.320567 4617.290686 4337.148087 1.436358813 1.338365783 1.446085235 1.33545563 0.858886935 1.046617766 0.970432656 0.962226902 1.06459143 1 12.08253099 -5.764162368 24.99901186 1.249971455 0.96653879 0.529726488 0.142551353 62.78457447 576416.0455 0.028104849 0.052656998 1.72E-06 5.764162368 -0.283432665 DIDIS(ph)SPEFK ddPTM_HeLa_CUDC101_4h_R1 4 DIDISSPEFK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 DIDIS(0.657)S(0.343)PEFK;DIDIS(0.663)S(0.337)PEFK;DIDIS(0.649)S(0.351)PEFK;DIDIS(0.612)S(0.388)PEFK ;;; 196.16 9.80E-17 3037962000 28888.1 31203.7 23292.5 26415 26365.8 26313.3 24277.5 22844.5 27446.1 27340.7 TRUE FALSE FALSE 25501.88071 32165.04901 24551.76301 27492.31788 24420.84746 25811.41764 25213.89131 25445.02554 26314.76014 27178.0763 0.938325451 1.183492483 0.903366476 1.011562319 0.898549522 0.949714666 0.927729065 0.936233502 0.968234832 1 14.73015572 -5.764149606 24.99986823 0.984832936 0.929580285 0.179896134 0.071345178 116.9008274 1078340.972 0.010264978 0.019234226 1.72E-06 5.764149606 -0.05525265 VNNGNTAPEDSS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 2 VNNGNTAPEDSSPAK 15 0 E9PJ27;G3V167;Q9UGN5-2;Q9UGN5 E9PJ27 PARP2 Poly [ADP-ribose] polymerase 2 1 0 VNNGNTAPEDS(0.185)S(0.815)PAK;VNNGNTAPEDS(0.341)S(0.659)PAK ; 161.82 4.58E-05 26330000 4981.2 4258.58 4164.25 4453.26 4050 4381.73 3474.65 4025.87 4008.36 4370.56 TRUE FALSE FALSE 4397.311287 4389.781802 4389.381951 4634.883191 3751.239569 4298.155801 3608.668414 4484.158768 3843.133704 4344.563715 1.012141052 1.01040797 1.010315935 1.06682362 0.863432974 0.989318165 0.830616985 1.032130972 0.884584496 1 12.08499559 -5.764071695 24.99995046 1.010456361 0.926173749 0.177143431 0.068858451 52.00058801 493873.4897 0.007132212 0.013366477 1.72E-06 5.764071695 -0.084282612 LSTEADTDT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 LSTEADTDTPK 11 0 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 LSTEADT(0.293)DT(0.707)PK;LSTEADTDT(1)PK;LSTEADT(0.084)DT(0.916)PK ;; 156 0.00090726 58452000 8199.1 8407.2 7703.7 7361 7810.4 7664.2 6868.4 6684.8 7870.4 7598.9 TRUE FALSE FALSE 7238.013927 8666.215867 8120.185324 7661.213397 7234.242353 7518.018154 7133.316489 7445.770611 7545.978781 7553.701405 0.958207578 1.147280704 1.074994217 1.014233021 0.957708276 0.995276058 0.944347163 0.985711536 0.998977637 1 12.88296804 -5.763991028 24.96108818 1.003740316 0.970625165 0.124175553 0.054400007 162.9485884 1594049.341 0.009283386 0.017402512 1.72E-06 5.763991028 -0.033115151 ADIKS(ph)PSLDVTVPEAELNLETPEISVGGK ddPTM_HeLa_CUDC101_4h_R1 2 ADIKSPSLDVTVPEAELNLETPEISVGGK 29 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ADIKS(0.653)PS(0.235)LDVT(0.112)VPEAELNLETPEISVGGK;ADIKS(0.714)PS(0.27)LDVT(0.016)VPEAELNLETPEISVGGK ; 104.4 9.55E-10 91521000 8108.2 7349.3 6004.6 7032.8 8549.1 7062.6 6083.7 3324.7 7793.3 7601.8 TRUE FALSE FALSE 7157.769087 7575.723222 6329.226839 7319.627982 7918.449925 6927.892672 6318.350347 3703.170409 7472.056875 7556.584156 0.947222838 1.002532767 0.837577761 0.968642423 1.04788748 0.916802159 0.836138421 0.49005878 0.988814089 1 12.88351852 -4.17993958 1.67702801 0.969651863 0.250554866 0.880325487 0.052850204 0.282878285 0.649974974 0.007572606 0.347374954 6.61E-05 4.17993958 -0.719096997 down T(ph)SSPLFNK ddPTM_HeLa_CUDC101_4h_R1 1 TSSPLFNK 8 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 T(0.723)S(0.092)S(0.185)PLFNK 148.94 0.014721 176210000 7944.7 6560.8 6241 6534.5 6580.8 5939.7 5774.2 6423.2 6643.3 6476.9 TRUE FALSE FALSE 7013.434309 6762.930472 6578.407338 6801.005155 6095.347495 5826.410119 5996.912828 7154.391125 6369.460362 6438.375111 1.089317442 1.050409514 1.021749622 1.056323224 0.946721399 0.904950398 0.931432656 1.111210671 0.989296251 1 12.65248092 -5.763987678 24.93424288 1.043027507 0.965666311 0.194985164 0.058280041 64.52038058 631321.0692 0.008699141 0.016311541 1.72E-06 5.763987678 -0.077361195 GNDPLTS(ph)SPGR ddPTM_HeLa_CUDC101_4h_R1 3 GNDPLTSSPGR 11 0 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 GNDPLT(0.056)S(0.472)S(0.472)PGR;GNDPLT(0.095)S(0.709)S(0.196)PGR;GNDPLT(0.108)S(0.679)S(0.213)PGR ;; 110.98 0.0067125 46847400 9589.7 24810.5 8407.1 11744.9 8810 9623 8115.2 8151.5 9857.8 12656.3 TRUE FALSE FALSE 8465.609903 25574.8821 8861.613256 12223.90779 8160.103852 9439.457308 8428.205982 9079.433811 9451.457312 12581.01976 0.672887418 2.032814714 0.70436367 0.971615021 0.648604327 0.750293496 0.669914374 0.721677096 0.751247314 1 13.61896125 -5.763817796 24.89402393 0.93699026 0.699405398 0.132418653 0.370256987 122.3768695 1280896.382 0.055027519 0.103282547 1.72E-06 5.763817796 -0.237584862 QGVGK(ac)YINPAATK ddPTM_HeLa_CUDC101_4h_R1 2 QGVGKYINPAATK 13 1 Q13356 Q13356 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2 0 1 ; QGVGK(1)YINPAATK;QGVGK(1)YINPAATK 225.15 5.22E-23 16333800 4959.2 5019.3 4973.8 4832.6 4665.8 4363.3 3752 2834.8 3958.5 4500.6 FALSE TRUE FALSE 4377.890094 5173.938684 5242.698673 5029.694316 4321.61323 4280.077322 3896.715897 3157.502173 3795.328955 4473.830231 0.978555257 1.156489723 1.171859101 1.124247917 0.965976134 0.95669194 0.871002183 0.705771567 0.848339959 1 12.1272948 -4.397351723 1.274731551 1.025174988 0.61591142 0.557439643 0.092725683 0.626828108 1.025272473 0.013112943 0.312048999 4.01E-05 4.397351723 -0.409263568 QGVGK(ac)YINPAATK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 QGVGKYINPAATKR 14 2 Q13356 Q13356 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2 0 2 ; QGVGK(1)YINPAATK(1)R;QGVGK(1)YINPAATK(1)R 172.99 3.46E-07 1909540 341.24 471.27 314.43 549.59 416.73 389.37 257.4 0 258.63 472.99 FALSE TRUE FALSE 301.2403645 485.7892701 331.4290369 572.0046557 385.9886581 381.943416 267.3280042 0 247.9691619 470.1766344 0.640696161 1.033205894 0.704903248 1.216573972 0.820943939 0.812340274 0.568569309 0 0.527395757 1 8.877059035 -4.424641553 2.341941908 0.859423322 1.72E-14 0.641019831 0.191839363 0.190233025 1.55979479 0.025386724 0.285155665 3.76E-05 4.424641553 -0.859423322 QGVGK(ac)YINPAATKR ddPTM_HeLa_CUDC101_4h_R1 1 QGVGKYINPAATKR 14 2 Q13356 Q13356 PPIL2 Peptidyl-prolyl cis-trans isomerase-like 2 0 1 QGVGK(1)YINPAATKR 125.84 0.0060734 3941400 1664.5 2397.3 2344.6 2489.7 3249.9 2526.9 2385.6 1756.8 2350.8 1079.6 FALSE TRUE FALSE 1469.389833 2471.157971 2471.356168 2591.240727 3010.161352 2478.703593 2477.613391 1956.787011 2253.899029 1073.178491 1.369194263 2.302653279 2.302837961 2.414547765 2.804902797 2.309684375 2.308668513 1.823356531 2.10020891 1 10.06767433 -7.338479775 2.229352148 1.141817671 2.360274144 0.432798879 0.38248144 0.084552945 0.794858331 0.046011865 0.053019177 4.59E-08 7.338479775 1.218456473 QGVTEAAEK(ac)TK ddPTM_HeLa_CUDC101_4h_R1 2 QGVTEAAEKTK 11 1 O76070;F8W754;G4Y816;Q16143 O76070 SNCG;SNCB Gamma-synuclein;Beta-synuclein 0 1 ; QGVTEAAEK(1)TK;QGVTEAAEK(1)TK 140.39 0.00034096 3896100 2089 2327.76 2638.9 2157.1 3572.7 2265.2 2516.6 2795 2410.6 2969.5 FALSE TRUE FALSE 1844.130587 2399.475527 2781.566916 2245.075862 3309.149039 2221.995084 2613.666105 3113.171502 2311.234048 2951.837282 0.62473992 0.81287527 0.942317157 0.760568977 1.12104724 0.752749854 0.885437053 1.054655526 0.782981522 1 11.52739748 SLVHEVGKPPQDVTDDS(ph)PPSK ddPTM_HeLa_CUDC101_4h_R1 4 SLVHEVGKPPQDVTDDSPPSK 21 1 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 SLVHEVGKPPQDVT(0.008)DDS(0.874)PPS(0.118)K;SLVHEVGKPPQDVT(0.088)DDS(0.868)PPS(0.044)K;SLVHEVGKPPQDVT(0.003)DDS(0.941)PPS(0.056)K;SLVHEVGKPPQDVT(0.003)DDS(0.963)PPS(0.034)K ;;; 103.03 7.23E-05 24342000 8673.03 5908.88 5968.85 6086.13 10952.9 8755.96 8456.73 7137.19 8769.96 8273.85 TRUE FALSE FALSE 7656.390571 6090.925589 6291.544086 6334.348688 10144.92639 8588.954651 8782.908909 7949.65886 8408.458537 8224.636772 0.930909265 0.74057077 0.764963154 0.770167591 1.233480173 1.044295923 1.067878029 0.966566559 1.022350138 1 13.00573625 -5.763710704 24.99998715 0.918520951 1.074916841 0.401700954 0.115194268 64.05803919 705084.7902 0.018830718 0.035362754 1.72E-06 5.763710704 0.15639589 SFEVEEVET(ph)PNST(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 SFEVEEVETPNSTPPR 16 0 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 2 0 SFEVEEVET(0.989)PNS(0.133)T(0.878)PPR 161.48 0.00084705 7199800 2351.7 2026.9 1923.8 1753.9 2375.5 1922.6 1623.7 673.74 2465.9 2346.7 TRUE FALSE FALSE 2076.037291 2089.346387 2027.806447 1825.431623 2200.264098 1885.929608 1686.326653 750.4358382 2364.254558 2332.741724 0.889955913 0.895661258 0.869280309 0.782526245 0.943209475 0.808460529 0.72289471 0.321696924 1.013508926 1 11.18781087 -4.175037345 1.193845641 0.925361989 7.33E-22 0.877874872 0.066040699 0.468797682 0.480617409 0.010670013 0.56242083 6.68E-05 4.175037345 -0.925361989 down S(ph)APSGPVR ddPTM_HeLa_CUDC101_4h_R1 2 SAPSGPVR 8 0 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 S(0.99)APS(0.01)GPVR;S(0.996)APS(0.004)GPVR ; 92.051 0.026624 31365000 1655.1 1032.53 1410.21 1416.45 1134.64 1139.7 1112.26 1055.02 1369.95 1435.04 TRUE FALSE FALSE 1461.091687 1064.341025 1486.450218 1474.218953 1050.939868 1117.962121 1155.160241 1175.119212 1313.480081 1426.504318 1.024246242 0.746118334 1.042022936 1.033448644 0.73672393 0.783707492 0.809783907 0.823775433 0.920768388 1 10.4782684 -5.763663417 24.99996135 0.993527993 0.789675964 0.462215203 0.087087944 31.95181326 359170.4595 0.012472595 0.023425251 1.72E-06 5.763663417 -0.203852029 QHFISFDTDR ddPTM_HeLa_CUDC101_4h_R1 1 QHFISFDTDR 10 0 C9J0K6;P30626-3;P30626-2;P30626 C9J0K6 SRI Sorcin 0 0 86.344 0.031441 13830000 985.16 695.35 549.38 558.37 1002.5 604.62 451.93 642.02 632.97 724.36 FALSE FALSE TRUE 869.6810382 716.7729093 579.0811446 581.1427421 928.5475723 593.0878809 469.3610915 715.1049617 606.8787087 720.0514745 1.207803982 0.995446763 0.804221872 0.807084997 1.289557212 0.823674281 0.651843803 0.993130334 0.84282684 1 9.491956234 -7.000943176 9.731151153 1.098342103 0.894930902 0.03781043 0.182326426 0.109888839 200.9302266 0.028100061 0.036115811 9.98E-08 7.000943176 -0.203411201 GNS(ph)RPGTPSAEGGSTSSTLR ddPTM_HeLa_CUDC101_4h_R1 2 GNSRPGTPSAEGGSTSSTLR 20 1 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 1 0 GNS(0.984)RPGT(0.004)PSAEGGS(0.007)T(0.001)S(0.004)STLR;GNS(0.998)RPGT(0.002)PSAEGGSTSSTLR ; 152.64 7.37E-05 15557400 1627.72 1405.88 1468.96 1482.08 1192.79 1174.51 1167.55 1173.43 1735.64 1493.39 TRUE FALSE FALSE 1436.921129 1449.193496 1548.376421 1542.525628 1104.800258 1152.108179 1212.582795 1307.008528 1664.096185 1484.50725 0.967944838 0.976211801 1.043023819 1.039082584 0.744220184 0.776087943 0.816825108 0.880432567 1.120975451 1 10.53576842 -5.76364733 25 0.992024949 0.80325788 0.770792819 0.057184567 17.10260832 193651.3666 0.006222746 0.011689689 1.72E-06 5.76364733 -0.188767069 SKGHYEVTGS(ph)DDETGKLQGSGVSLASK ddPTM_HeLa_CUDC101_4h_R1 1 SKGHYEVTGSDDETGKLQGSGVSLASK 27 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.001)KGHY(0.002)EVT(0.032)GS(0.921)DDET(0.042)GKLQGS(0.001)GVSLASK 63.109 0.00094224 59453000 1988.7 1348.4 1450.8 1183.8 3552.7 2280.6 2721.2 2333.3 2250.6 1976.8 TRUE FALSE FALSE 1755.587601 1389.942606 1529.234636 1232.080481 3290.624399 2237.101355 2826.157596 2598.91344 2157.829315 1965.041906 0.893409752 0.707334842 0.77821986 0.626999596 1.674582303 1.138449693 1.438217469 1.322574055 1.098108549 1 10.94034436 -5.76354246 25 0.893845694 1.378438401 0.681801891 0.180095935 26.05856155 309772.0856 0.025506964 0.047936603 1.72E-06 5.76354246 0.484592706 QHYIDLK ddPTM_HeLa_CUDC101_4h_R1 2 QHYIDLK 7 0 Q32Q12;P22392-2;J3KPD9;P22392;O60361;F6XY72 Q32Q12 NME1-NME2;NME2;NME2P1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase 0 0 ; ; 113.71 0.012255 133238000 28891 25861 24369 24538 25991 22697 22940 24079 25154 23357 FALSE FALSE TRUE 25504.44078 26657.74676 25686.46185 25538.7657 24073.69571 22264.09254 23824.80348 26820.05603 24117.14147 23218.07153 1.098473693 1.148146465 1.106313323 1.099952064 1.036851647 0.958912221 1.026131884 1.155137109 1.038722852 1 14.50296053 -4.250823831 23.35944101 1.054193751 1.155137256 0.228756545 0.053797025 808.1677842 1778276.617 0.008758964 0.15628771 5.61E-05 4.250823831 0.100943505 LLPEGEETLES(ph)DDEKDEHTSK ddPTM_HeLa_CUDC101_4h_R1 4 LLPEGEETLESDDEKDEHTSK 21 1 Q8N6N3 Q8N6N3 C1orf52 UPF0690 protein C1orf52 1 0 LLPEGEET(0.183)LES(0.817)DDEKDEHTSK;LLPEGEET(0.013)LES(0.96)DDEKDEHT(0.02)S(0.007)K;LLPEGEET(0.003)LES(0.997)DDEKDEHTSK;LLPEGEETLES(0.635)DDEKDEHT(0.183)S(0.183)K ;;; 85.518 0.0004791 271820000 16934.5 9782.4 7736.64 7692.46 22589.5 15916.8 15198.93 12584.57 14616.47 11754.06 TRUE FALSE FALSE 14949.46358 10083.78415 8154.90616 8006.191768 20923.11759 15613.21356 15785.15782 14017.14658 14013.97292 11684.14633 1.279465625 0.863031313 0.697946254 0.685218376 1.79072711 1.336273367 1.350989399 1.19967229 1.199400669 1 13.51226471 -5.763256657 24.99970274 1.048540576 1.408589185 0.451325945 0.237907121 46.72667176 642818.1614 0.039129878 0.073656896 1.72E-06 5.763256657 0.360048609 QIAEEDFYEK ddPTM_HeLa_CUDC101_4h_R1 1 QIAEEDFYEK 10 0 P33993;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 0 0 135.66 0.0094285 9787500 1214.1 879.62 1003.1 1022.9 1151.1 997.57 1152.5 1103.5 978.31 1151.1 FALSE FALSE TRUE 1071.785038 906.7200496 1057.33062 1064.618283 1066.185646 978.5430143 1196.952311 1229.117979 937.9836477 1144.253206 0.936667717 0.792412068 0.924035532 0.930404457 0.931774227 0.855180487 1.046055458 1.074166079 0.819734341 1 10.16019062 -4.6087823 8.149474436 0.941851935 1.067154405 0.357436463 0.069841501 0.189228034 15.39654162 0.009310537 0.035144205 2.46E-05 4.6087823 0.12530247 LGASNS(ph)PGQPNSVK ddPTM_HeLa_CUDC101_4h_R1 5 LGASNSPGQPNSVK 14 0 P49756 P49756 RBM25 RNA-binding protein 25 1 0 LGAS(0.008)NS(0.992)PGQPNSVK;LGASNS(1)PGQPNSVK;LGAS(0.01)NS(0.99)PGQPNS(0.001)VK;LGASNS(0.993)PGQPNS(0.006)VK;LGAS(0.005)NS(0.982)PGQPNS(0.013)VK ;;;; 249.36 5.33E-56 2531162000 28128.8 24054.7 23367.6 24619.7 23268.3 22751 22467.1 20356.4 23284.8 24745.6 TRUE FALSE FALSE 24831.5847 24795.7968 24630.92314 25623.79778 21551.84387 22317.06258 23333.66357 22673.69029 22324.99069 24598.41207 1.009479174 1.008024287 1.001321673 1.041685037 0.876147769 0.907256229 0.948584141 0.921754227 0.907578531 1 14.58627757 -5.763192903 24.99999999 1.006938836 0.915504817 0.517442282 0.037306069 13.337805 190161.601 0.002923633 0.005505439 1.73E-06 5.763192903 -0.091434019 DPQT(ph)PVLQTK ddPTM_HeLa_CUDC101_4h_R1 1 DPQTPVLQTK 10 0 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 DPQT(0.999)PVLQT(0.001)K 156 0.00047372 25448000 3858.8 3319 2825.8 2875.1 2654.4 2969 2392.1 906.27 3365.7 3676.9 TRUE FALSE FALSE 3406.477314 3421.254456 2978.571296 2992.359005 2458.5902 2912.371272 2484.364098 1009.436114 3226.964421 3655.029635 0.93199718 0.936040141 0.81492398 0.818696236 0.672659443 0.796811945 0.679711068 0.276177272 0.882883244 1 11.83566739 -4.17344041 0.401308404 0.979419695 4.10E-19 0.788760192 0.090163364 1.67736991 0.174328836 0.0224045 0.798225584 6.71E-05 4.17344041 -0.979419695 down SSLPPNS(ph)PKPVR ddPTM_HeLa_CUDC101_4h_R1 1 SSLPPNSPKPVR 12 1 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 S(0.004)S(0.004)LPPNS(0.991)PKPVR 63.681 0.040072 16833000 1468.7 1203.2 1252.9 1300.6 1223.8 1054.4 1220.3 1099.3 1263.9 1391.7 TRUE FALSE FALSE 1296.541212 1240.269166 1320.635564 1353.64409 1133.522712 1034.289077 1267.36738 1224.439868 1211.801507 1383.422107 0.937198565 0.896522587 0.95461505 0.978475104 0.819361428 0.747630873 0.9161104 0.885080456 0.875944877 1 10.4340257 -5.762992438 24.99998342 0.962698963 0.840592185 0.395061023 0.055710166 23.64014367 380551.7016 0.007834224 0.014766797 1.73E-06 5.762992438 -0.122106778 DNTFFRES(ph)PVGR ddPTM_HeLa_CUDC101_4h_R1 1 DNTFFRESPVGR 12 1 Q8NEY8;F8W6A0;F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;F8WF16;B7Z8L1;Q8NEY8-5;Q8NEY8-6;F8VWU8;F8VPY7 Q8NEY8 PPHLN1 Periphilin-1 1 0 DNTFFRES(1)PVGR 79.804 0.019989 52467000 3732.8 3439.8 3203.8 3428.5 3148.6 3075.4 3259.1 2802.2 3304.9 3397.2 TRUE FALSE FALSE 3295.246843 3545.776161 3377.007119 3568.329049 2916.334051 3016.741869 3384.804579 3121.191121 3168.670623 3376.993303 0.975793123 1.049980217 1.000004091 1.05665861 0.863588935 0.893321839 1.002313086 0.924251499 0.938311195 1 11.7215236 -5.762897469 24.99986262 0.998628941 0.924718649 0.436081378 0.045729211 29.31210588 502589.5729 0.006251642 0.011791003 1.73E-06 5.762897469 -0.073910292 TSQLGDS(ph)PFYPGK ddPTM_HeLa_CUDC101_4h_R1 1 TSQLGDSPFYPGK 13 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 TSQLGDS(1)PFYPGK 169.98 5.01E-07 41609000 5306.7 4616.5 4961.2 4516.2 5190 4971.5 4145.6 1756.7 5324.3 5334.7 TRUE FALSE FALSE 4684.65667 4758.728893 5229.417479 4700.390157 4807.14404 4876.676921 4305.497181 1956.675627 5104.8301 5302.968967 0.883402618 0.897370685 0.98613013 0.886369539 0.906500504 0.91961257 0.811903145 0.368977386 0.962636239 1 12.37258459 -4.170501635 1.92520227 0.936158636 0.099100602 0.948832996 0.039032834 0.201261548 0.63589903 0.007173738 0.322866301 6.75E-05 4.170501635 -0.837058033 down GGYLS(ph)DGDSPELTTK ddPTM_HeLa_CUDC101_4h_R1 1 GGYLSDGDSPELTTK 15 0 Q5VT97-2;Q5VT97 Q5VT97-2 SYDE2 Rho GTPase-activating protein SYDE2 1 0 GGYLS(0.999)DGDS(0.001)PELTTK 147.56 0.00027421 9770200 2133.6 2151.9 1705.7 1740.7 1576.9 1711.8 1456.8 1240.2 1668.3 1539.3 TRUE FALSE FALSE 1883.502642 2218.197488 1797.915301 1811.69327 1460.575229 1679.150267 1512.989264 1381.379355 1599.531968 1530.144175 1.230931485 1.449665675 1.174997318 1.184001677 0.954534385 1.097380426 0.988788696 0.902777253 1.045347225 1 10.57945188 -5.762700101 24.99999999 1.150154666 0.994043661 0.359291273 0.123337831 41.86317018 830172.0147 0.021725569 0.041019557 1.73E-06 5.762700101 -0.156111005 S(ph)QSFTHSPSGDPK ddPTM_HeLa_CUDC101_4h_R1 1 SQSFTHSPSGDPK 13 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 S(0.703)QS(0.225)FT(0.072)HSPSGDPK 117.53 0.0016751 30893000 5617.1 4024.8 4259.9 4304.1 7305.7 6307.8 6037.6 6131.3 5210.8 4720.8 TRUE FALSE FALSE 4958.672053 4148.799317 4490.203079 4479.639802 6766.773066 6187.489225 6270.472254 6829.262408 4996.008618 4692.720472 1.05667322 0.884092573 0.956844352 0.95459336 1.441972329 1.318529254 1.336212607 1.455288558 1.064629493 1 12.19620881 -5.762560225 25 1.005159273 1.379339329 0.903750574 0.064042525 7.002716773 156198.9115 0.009796239 0.018509855 1.73E-06 5.762560225 0.374180056 QIATLHAQVADMK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 QIATLHAQVADMKK 14 1 P35579 P35579 MYH9 Myosin-9 0 1 QIATLHAQVADMK(1)K 115.91 0.0040263 0 1116.4 486.9 442 452.12 1196.3 1122.4 944.16 849.7 875.12 2236.7 FALSE TRUE FALSE 985.5372844 501.9008119 465.895857 470.5594078 1108.051332 1100.99209 980.5765675 946.4264134 839.0471832 2223.396009 0.443257647 0.225736131 0.209542454 0.211639944 0.498359864 0.495184882 0.441026503 0.425667047 0.377371903 1 11.11854921 -8.817702331 0.758006187 0.992003568 0.363484012 0.018520733 0.215880247 0.225682908 0.247958084 0.077715386 0.027816836 1.52E-09 8.817702331 -0.628519556 LS(ph)PEVAPPAHR ddPTM_HeLa_CUDC101_4h_R1 3 LSPEVAPPAHR 11 0 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 0 LS(1)PEVAPPAHR;LS(1)PEVAPPAHR;LS(1)PEVAPPAHR ;; 99.011 0.009474 278001000 26959.6 23645.2 22416.3 22930.4 21608.7 21899.5 19763.9 16877.4 20377.7 23514.1 TRUE FALSE FALSE 23799.43656 24373.68059 23628.19298 23865.60083 20014.66925 21481.80352 20526.20024 18798.655 19537.72258 23374.23709 1.018190945 1.042758337 1.010864778 1.021021595 0.856270482 0.919037633 0.878154875 0.804246784 0.83586568 1 14.51263166 -5.7625601 24.99997708 1.012604053 0.869308685 0.456214065 0.062740708 7.785274299 173673.1444 0.004162129 0.007864796 1.73E-06 5.7625601 -0.143295368 TATCHSSSS(ph)PPIDAASAEPYGFR ddPTM_HeLa_CUDC101_4h_R1 3 TATCHSSSSPPIDAASAEPYGFR 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TATCHSS(0.001)S(0.023)S(0.975)PPIDAASAEPYGFR;TATCHSS(0.001)S(0.03)S(0.969)PPIDAASAEPYGFR;T(0.001)AT(0.003)CHS(0.009)S(0.038)S(0.115)S(0.834)PPIDAASAEPYGFR ;; 98.924 6.09E-05 249151000 4074.6 3255.43 2608.11 2894.5 4616.5 4180.5 3654.2 3443.43 4033.5 3122.6 TRUE FALSE FALSE 3596.981565 3355.72594 2749.112316 3012.550221 4275.949992 4100.763928 3795.143718 3835.416152 3867.237423 3104.026636 1.158811436 1.081087997 0.885660027 0.970529758 1.377549388 1.321111063 1.222651788 1.235626044 1.245877654 1 11.59992522 -5.762396152 24.99999999 1.054941398 1.286755558 0.557084745 0.10142819 14.3960586 376177.5731 0.014557792 0.027530289 1.73E-06 5.762396152 0.23181416 ESS(ph)PLPK ddPTM_HeLa_CUDC101_4h_R1 2 ESSPLPK 7 0 Q9HCE3 Q9HCE3 ZNF532 Zinc finger protein 532 1 0 ES(0.004)S(0.996)PLPK;ES(0.132)S(0.868)PLPK ; 123.98 0.011482 39358000 22629 16041.4 19451.6 18413.4 16526.1 16117.9 16371.2 11428.5 21672 18818.2 TRUE FALSE FALSE 19976.46292 16535.61652 20503.21233 19164.37804 15307.00253 15810.47791 17002.64267 12729.47424 20778.67099 18706.26851 1.067902073 0.883961251 1.096061052 1.024489627 0.818281985 0.84519678 0.908927543 0.680492437 1.110786525 1 14.19123418 -5.762290894 24.6344561 1.025329083 0.822344292 0.642074674 0.079311364 8.690680718 251438.1853 0.010418016 0.019715422 1.73E-06 5.762290894 -0.202984791 SLTLS(ph)FVSER ddPTM_HeLa_CUDC101_4h_R1 2 SLTLSFVSER 10 0 Q86V48-2;Q86V48-3;Q86V48;E5RFK8 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 SLTLS(0.5)FVS(0.5)ER;SLTLS(0.942)FVS(0.058)ER ; 105.2 0.010616 8105000 2600.1 1586 5803.6 2751.5 8243.3 9726.5 5262.7 5643.6 6518.4 3675.4 TRUE FALSE FALSE 2295.320219 1634.86278 6117.360171 2863.718063 7635.208182 9540.983218 5465.684102 6286.044612 6249.708793 3653.538557 0.628245791 0.4474738 1.674365844 0.783820403 2.089811853 2.611436302 1.495997378 1.720535999 1.710590622 1 11.83507872 -5.762247504 24.99804398 0.857234203 1.990055726 0.448138979 0.485266144 10.30236242 318703.6963 0.060345677 0.114226937 1.73E-06 5.762247504 1.132821523 T(ph)LSMIEEEIR ddPTM_HeLa_CUDC101_4h_R1 4 TLSMIEEEIR 10 0 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5;C9JVY5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 T(0.77)LS(0.23)MIEEEIR;T(0.998)LS(0.002)MIEEEIR;T(0.986)LS(0.014)MIEEEIR;T(0.857)LS(0.143)MIEEEIR ;;; 168.85 1.91E-06 291283000 6643.4 5852.29 5371.43 5670.52 7551.27 6829.84 6845 6303.89 5828.54 6054.04 TRUE FALSE FALSE 5864.670723 6032.592118 5661.825753 5901.788316 6994.227856 6699.572181 7109.013943 7021.499356 5588.285114 6018.030301 0.974516649 1.002419698 0.940810443 0.98068438 1.162212137 1.113249992 1.181285834 1.166743769 0.928590392 1 12.55507566 -5.762204703 24.99999864 0.984505688 1.154643667 0.906461885 0.028875774 3.704046359 121002.9394 0.003434973 0.00650497 1.73E-06 5.762204703 0.170137979 QIEEELWEEEFIER ddPTM_HeLa_CUDC101_4h_R1 1 QIEEELWEEEFIER 14 0 Q9BPZ3;D6RA77 Q9BPZ3 PAIP2 Polyadenylate-binding protein-interacting protein 2 0 0 157.2 0.00036587 6066500 953.07 688.55 713.94 734.77 928.52 862.43 761.57 702.66 833.82 1040.4 FALSE FALSE TRUE 841.3525794 709.7634094 752.537756 764.7370965 860.0249295 845.9805847 790.94401 782.6479742 799.4495867 1034.211655 0.813520691 0.686284482 0.727643856 0.739439643 0.831575361 0.817995602 0.764779633 0.75675803 0.773003846 1 10.01431575 -8.63261091 0.758557601 0.991808498 0.764840266 0.049196604 0.079447458 0.215674651 0.249478415 0.025248027 0.01085083 2.33E-09 8.63261091 -0.226968232 QIEQEK(ac)LASMK ddPTM_HeLa_CUDC101_4h_R1 1 QIEQEKLASMK 11 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 0 1 QIEQEK(1)LASMK 207.88 4.94E-48 0 228.36 234.32 190.73 298.19 303.08 259.66 383.1 209.09 216.36 199 FALSE TRUE FALSE 201.591987 241.5391215 201.0414407 310.3514771 280.7223922 254.7074181 397.8762953 232.8919604 207.4415492 197.8163391 1.019086633 1.221027153 1.016303515 1.568886971 1.419106194 1.287595449 2.01134192 1.177314075 1.048657306 1 7.628017784 -6.344620131 1.140433172 1.010145361 1.533896875 0.449072487 0.225278856 0.258709868 0.666435694 0.035431049 0.068063414 4.52E-07 6.344620131 0.523751514 QIESSDYDSSSSK(ac)GK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 QIESSDYDSSSSKGKK 16 2 Q9UNL4-2;Q9UNL4-8;Q9UNL4-3;Q9UNL4-6;Q9UNL4 Q9UNL4-2 ING4 Inhibitor of growth protein 4 0 2 ; QIESSDYDSSSSK(1)GK(1)K;QIESSDYDSSSSK(1)GK(1)K 386.99 0 86300000 7543.8 8111.4 8387.5 8113.6 8729.9 6835 7342.2 7736.9 5156.3 5472.3 FALSE TRUE FALSE 6659.5272 8361.30262 8840.953621 8444.507678 8085.912669 6704.633763 7625.391113 8617.637422 4943.755132 5439.750516 1.224233939 1.53707465 1.625249834 1.552370399 1.486449175 1.232525967 1.401790595 1.584197179 0.908820196 1 12.40932477 -7.645711235 1.497322647 1.069805031 1.481969276 0.728212979 0.124939373 0.153271669 0.706178365 0.02725236 0.02754621 2.26E-08 7.645711235 0.412164245 EGSVLDILKS(ph)PGFAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 EGSVLDILKSPGFASPK 17 1 P49790-3;P49790 P49790-3 NUP153 Nuclear pore complex protein Nup153 2 0 EGSVLDILKS(1)PGFAS(1)PK 68.291 0.030861 18732000 6316.2 6174.8 6050.6 5651.6 7158.4 5978.2 5286.9 1817.8 6476.4 7239.1 TRUE FALSE FALSE 5575.824611 6365.038269 6377.713738 5882.096676 6630.339094 5864.175795 5490.817504 2024.731004 6209.440051 7196.041511 0.774846088 0.884519393 0.886280843 0.817407274 0.921386999 0.814916894 0.76303305 0.281367332 0.862896641 1 12.81298779 -4.170288607 1.856270356 0.884049806 5.05E-12 0.897387644 0.059479893 0.33908768 0.978710692 0.012170352 0.558631524 6.76E-05 4.170288607 -0.884049806 down QIILEK(ac)EETEELKR ddPTM_HeLa_CUDC101_4h_R1 1 QIILEKEETEELKR 14 2 P12956;P12956-2;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 1 QIILEK(1)EETEELKR 118.08 0.0087659 936710 563.88 361.55 251.25 379.15 438.17 557.94 515.17 653.41 518.85 300.5 FALSE TRUE FALSE 497.7828412 372.688927 264.833335 394.6133758 405.8470721 547.2982241 535.0402795 727.7915532 497.4627834 298.7126126 1.666427262 1.247650455 0.886582366 1.321046916 1.358653953 1.832189874 1.791153961 2.436427263 1.665355805 1 8.222614344 -4.360541951 0.882915938 1.279484667 2.892932506 0.66524109 0.249851586 1.005291799 0.636987248 0.046133652 1.509041558 4.36E-05 4.360541951 1.613447839 QIILEKEETEELK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 QIILEKEETEELKR 14 2 P12956;P12956-2;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 1 ; QIILEKEETEELK(1)R;QIILEKEETEELK(1)R 136.33 0.0036826 2636500 1418.78 411.28 538.78 615.81 1259.31 846.75 1116.3 787.85 960.62 844.48 FALSE TRUE FALSE 1252.472759 423.9510493 567.9080765 640.9253936 1166.41321 830.5996545 1159.356065 877.5356594 921.022837 839.4569954 1.492003481 0.505030099 0.676518368 0.763499973 1.389485366 0.989448726 1.381078568 1.045361066 1.097165003 1 9.713312609 QILGVIDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 QILGVIDKK 9 1 Q14444-2;Q14444;E9PLA9 Q14444-2 CAPRIN1 Caprin-1 0 1 QILGVIDK(1)K 142.43 0.001628 1364700 1650.7 695.93 563.96 731.45 1761.6 1067.8 1261.1 1317.7 1403.9 951.12 FALSE TRUE FALSE 1457.207448 717.3707784 594.4493835 761.2816926 1631.650278 1047.433494 1309.741049 1467.701642 1346.030648 945.4626959 1.541263822 0.758751013 0.62873912 0.805194849 1.72576907 1.107852799 1.385291091 1.552363354 1.423673989 1 9.884876726 -4.351194308 0.998255225 1.163300178 1.710576355 0.146904919 0.336373496 3.29210849 2.773870258 0.058203006 1.856824771 4.45E-05 4.351194308 0.547276177 GNPTVEVDLFTS(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 GNPTVEVDLFTSK 13 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798 P06733 ENO1 Alpha-enolase;Enolase 1 0 GNPTVEVDLFT(0.073)S(0.927)K;GNPTVEVDLFT(0.025)S(0.975)K ; 241.27 6.84E-44 62974000 10316.6 9066 9292.3 7654.8 10186.3 8160.3 8015.5 7523.3 8084.6 9442.7 TRUE FALSE FALSE 9107.303787 9345.312714 9794.669846 7966.995831 9434.876943 8004.655873 8324.66052 8379.722062 7751.349366 9386.5344 0.970252001 0.995608423 1.043480951 0.848768618 1.005150201 0.852780753 0.886872637 0.892738651 0.825794594 1 13.19637688 -5.762184879 1.035089729 0.989050541 0.881085583 0.079640927 0.071773916 0.356939915 0.737616293 0.007678839 0.023466731 1.73E-06 5.762184879 -0.107964958 HIVSNDSSDSDDESHEPKGTENEDAGSDY(ph)QSDNQASWIHR ddPTM_HeLa_CUDC101_4h_R1 1 HIVSNDSSDSDDESHEPKGTENEDAGSDYQSDNQASWIHR 40 1 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 HIVS(0.003)NDS(0.038)S(0.038)DS(0.165)DDES(0.165)HEPKGT(0.188)ENEDAGS(0.188)DY(0.201)QS(0.015)DNQASWIHR 49.479 0.0031472 26723000 1493.1 1035.6 900.53 987.86 2179.2 2018.6 1435.3 1631.4 1114.1 1255.3 TRUE FALSE FALSE 1318.081081 1067.505609 949.2153758 1028.149201 2018.444758 1980.098568 1490.660002 1817.111982 1068.176326 1247.83342 1.056295705 0.855487272 0.760690779 0.823947479 1.617559464 1.586829249 1.194598556 1.456213588 0.856024778 1 10.28520964 -5.762172399 24.99995361 0.978122437 1.453359335 0.771286914 0.148096208 8.569934978 292298.1605 0.023177305 0.043891687 1.73E-06 5.762172399 0.475236898 SVSSNVASVSPIPAGS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 SVSSNVASVSPIPAGSK 17 0 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 SVSSNVASVS(0.006)PIPAGS(0.994)K 161.48 3.72E-05 77929000 6607.3 5372 5415.7 5558.8 5502.2 5441.9 4552.3 1700.1 6292.2 6739.6 TRUE FALSE FALSE 5832.80231 5537.504953 5708.489124 5785.511891 5096.313668 5338.104824 4727.883736 1893.632512 6032.832853 6699.512559 0.870630849 0.82655341 0.852075292 0.863572064 0.760699174 0.796790032 0.705705631 0.282652282 0.900488326 1 12.70984042 -4.170191639 0.795087935 0.91769807 1.01E-65 0.849362613 0.071424317 0.867347818 0.356940766 0.013518586 0.725650749 6.76E-05 4.170191639 -0.91769807 down EFIPPNPWS(ph)SSGLS(ph)GKS(ph)SGTMS(ph)VISK ddPTM_HeLa_CUDC101_4h_R1 2 EFIPPNPWSSSGLSGKSSGTMSVISK 26 1 Q9UPZ9 Q9UPZ9 ICK Serine/threonine-protein kinase ICK 4 0 EFIPPNPWS(0.477)S(0.477)S(0.064)GLS(0.8)GKS(0.8)S(0.219)GT(0.219)MS(0.473)VIS(0.473)K;EFIPPNPWS(0.343)S(0.343)S(0.343)GLS(0.779)GKS(0.779)S(0.235)GT(0.235)MS(0.471)VIS(0.471)K ; 62.663 0.0011638 598610000 5870 5930.8 5865.5 6267 3295.5 4179.8 3910.1 3952.2 5624.5 5862.6 TRUE FALSE FALSE 5181.927498 6113.520918 6182.606672 6522.595348 3052.397531 4100.077279 4060.913867 4402.102473 5392.655729 5827.728994 0.889184707 1.049040016 1.060894678 1.1192345 0.523771358 0.703546318 0.696826134 0.755371857 0.925344287 1 12.50871807 -5.762162444 24.99999843 0.975057646 0.674208532 0.781360895 0.086421835 8.013800568 277093.9046 0.013909218 0.026340943 1.73E-06 5.762162444 -0.300849115 QISDGEREELNLTANR ddPTM_HeLa_CUDC101_4h_R1 2 QISDGEREELNLTANR 16 1 O95816-2;O95816 O95816-2 BAG2 BAG family molecular chaperone regulator 2 0 0 ; ; 150.12 0.00022485 17246600 1152.57 773.36 860.2 1153.43 1235.62 1058.59 991.77 1170.46 1047.52 1171.37 FALSE FALSE TRUE 1017.467492 797.1863049 906.705014 1200.471861 1144.470774 1038.399159 1030.022901 1303.700435 1004.340782 1164.402639 0.873810706 0.684631139 0.778686842 1.030976589 0.982882326 0.89178702 0.88459341 1.119630265 0.862537363 1 10.1853743 TLS(ph)KSEHSLFQAK ddPTM_HeLa_CUDC101_4h_R1 1 TLSKSEHSLFQAK 13 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 T(0.136)LS(0.856)KS(0.008)EHSLFQAK 83.37 0.014774 75472000 2543.3 2010 2006.4 2200.8 3653.3 3278.5 2811.8 2551.4 2889.1 3160.1 TRUE FALSE FALSE 2245.178229 2071.925718 2114.872053 2290.558137 3383.803337 3215.968075 2920.252068 2841.841063 2770.010075 3141.303585 0.714728191 0.659575129 0.67324663 0.729174394 1.077197172 1.023768632 0.929630642 0.904669347 0.88180273 1 11.61714766 -5.762097387 24.99998413 0.820498286 0.982799758 0.427543986 0.110727811 21.63460374 822025.8257 0.022265405 0.042178354 1.73E-06 5.762097387 0.162301472 GS(ph)PEPSALPPQR ddPTM_HeLa_CUDC101_4h_R1 2 GSPEPSALPPQR 12 0 O00562-2;O00562 O00562-2 PITPNM1 Membrane-associated phosphatidylinositol transfer protein 1 1 0 GS(0.913)PEPS(0.087)ALPPQR;GS(0.98)PEPS(0.02)ALPPQR ; 114.76 0.0022092 4628700 8806.7 7228.5 7436.9 7215.1 7926.9 7966.3 6267.5 2925.1 9099.2 8179.4 TRUE FALSE FALSE 7774.391976 7451.201517 7838.961309 7509.362964 7342.14838 7814.3561 6509.239574 3258.08156 8724.127125 8130.748565 0.956171737 0.916422573 0.964113113 0.923575844 0.903010137 0.961086921 0.800570762 0.400711144 1.072979573 1 12.98917247 -4.169706937 1.680837661 0.964773389 0.10416381 0.931375337 0.046116076 0.172683661 0.390989498 0.005309822 0.25624394 6.77E-05 4.169706937 -0.860609579 down QISQMADDTVAELDR ddPTM_HeLa_CUDC101_4h_R1 3 QISQMADDTVAELDR 15 0 Q96E11-8;Q96E11-3;Q96E11 Q96E11-8 MRRF "Ribosome-recycling factor, mitochondrial" 0 0 ;; ;; 175.6 2.03E-06 12377500 2493.1 2043.45 2034.61 1958.51 1922.45 2054.85 1786.8 1727.08 2460.03 2238.77 FALSE FALSE TRUE 2200.862597 2106.406272 2144.607171 2038.386503 1780.634694 2015.65716 1855.717475 1923.683806 2358.626522 2225.453696 0.988950074 0.946506448 0.963671891 0.915941997 0.800122104 0.905728644 0.833860294 0.864400733 1.059840753 1 11.11988377 -6.281867008 1.294878893 0.993226795 0.85202554 0.765339488 0.036827563 0.121462186 0.400977357 0.004754177 0.009084744 5.23E-07 6.281867008 -0.141201255 NSTGGTSVGWDS(ph)PPAS(ph)PLQR ddPTM_HeLa_CUDC101_4h_R1 2 NSTGGTSVGWDSPPASPLQR 20 0 Q13424-2;Q13424 Q13424-2 SNTA1 Alpha-1-syntrophin 2 0 NSTGGT(0.028)S(0.246)VGWDS(0.726)PPAS(1)PLQR;NS(0.165)T(0.042)GGT(0.101)S(0.045)VGWDS(0.647)PPAS(1)PLQR ; 161.31 7.78E-07 11750000 2514.39 2354.43 1807.53 1935.93 2936.45 2519.77 2135.59 2422.69 2496.01 2315.53 TRUE FALSE FALSE 2219.657016 2426.967198 1905.250539 2014.885593 2719.833934 2471.709585 2217.960422 2698.479237 2393.123411 2301.757125 0.96433155 1.054397604 0.827737435 0.875368462 1.181633763 1.073835966 0.963594464 1.1723562 1.039694147 1 11.1685199 -5.761865062 24.99999948 0.969012783 1.08654939 0.376384186 0.085837036 10.54966157 619639.1962 0.012125254 0.022998438 1.73E-06 5.761865062 0.117536607 T(ph)RTPAS(ph)INATPANINLADLTR ddPTM_HeLa_CUDC101_4h_R1 1 TRTPASINATPANINLADLTR 21 1 Q7KZ85-2;Q7KZ85 Q7KZ85-2;Q7KZ85 SUPT6H Transcription elongation factor SPT6 2 0 T(0.522)RT(0.522)PAS(0.954)INAT(0.001)PANINLADLTR 57.803 0.032159 4997400 1194.7 973.48 1177.2 1024.1 841.35 906.33 705.99 682.81 1185.6 1029.4 TRUE FALSE FALSE 1054.659077 1003.471765 1240.842993 1065.867225 779.2852867 889.0432653 733.2202708 760.5383304 1136.729066 1023.277083 1.030668129 0.980645205 1.212616811 1.041621319 0.761558428 0.868819678 0.71654128 0.74323792 1.110871224 1 9.998981136 -5.761772641 24.99993724 1.03020706 0.7754166 0.775394183 0.075297633 3.333831763 250122.1638 0.010604295 0.020123674 1.73E-06 5.761772641 -0.25479046 SGSSSPDS(ph)EITELKFPSINHD ddPTM_HeLa_CUDC101_4h_R1 2 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 S(0.017)GS(0.017)S(0.064)S(0.243)PDS(0.658)EITELKFPSINHD;S(0.009)GS(0.009)S(0.031)S(0.122)PDS(0.67)EIT(0.158)ELKFPS(0.001)INHD ; 127.01 3.28E-07 40484600 2216.24 1223.96 975.36 1137.07 2820.2 2434.33 1835.84 1477.63 2045.14 1665.6 TRUE FALSE FALSE 1956.455707 1261.668757 1028.090912 1183.444629 2612.159465 2387.899211 1906.648964 1645.837426 1960.838464 1655.692937 1.181653713 0.762018565 0.620942983 0.714773013 1.577683522 1.442235548 1.151571599 0.994047501 1.184300796 1 10.69321942 -5.761606396 24.99999999 0.998873597 1.292172934 0.34971416 0.236668764 5.317662229 796166.0429 0.038809633 0.073720466 1.73E-06 5.761606396 0.293299336 VGGPLAVLGPSRS(ph)SEDLAGPLPSSVSSSSTTSSKPK ddPTM_HeLa_CUDC101_4h_R1 1 VGGPLAVLGPSRSSEDLAGPLPSSVSSSSTTSSKPK 36 2 Q9NRF2-2;Q9NRF2-3;Q9NRF2 Q9NRF2-2 SH2B1 SH2B adapter protein 1 1 0 VGGPLAVLGPS(0.096)RS(0.452)S(0.452)EDLAGPLPSSVSSSSTTSSKPK 113.92 4.81E-16 45183000 1974.9 2134.2 1907.6 1775.5 3337.8 2846.2 2544.5 2612.9 2494.8 2494.4 TRUE FALSE FALSE 1743.405216 2199.952172 2010.730626 1847.912564 3091.577144 2791.913477 2642.642217 2910.341974 2391.963288 2479.563198 0.703109813 0.887233757 0.810921306 0.745257296 1.24682329 1.12596988 1.065769253 1.173731719 0.964671233 1 11.27587028 -5.761391229 25 0.847591012 1.144901555 0.709407153 0.094360574 0.693969276 359803.3932 0.017773088 0.03380586 1.73E-06 5.761391229 0.297310543 QIYYSDKYDDEEFEYR ddPTM_HeLa_CUDC101_4h_R1 1 QIYYSDKYDDEEFEYR 16 1 Q5T179;P61024 Q5T179 CKS1B Cyclin-dependent kinases regulatory subunit;Cyclin-dependent kinases regulatory subunit 1 0 0 144.88 0.00032255 82015000 2108.8 1870.2 1700.2 1757.1 1813.8 1519.1 1758.4 1754.9 2039.3 1562.3 FALSE FALSE TRUE 1861.609661 1927.818645 1792.117955 1828.762133 1679.999588 1490.125698 1826.222077 1954.670722 1955.239191 1553.00737 1.198712702 1.241345458 1.153966162 1.177561786 1.081771806 0.95950974 1.175926214 1.258635831 1.259001875 1 10.60084896 -9.367412827 1.112178549 1.000712695 1.15430622 0 0.113030042 0.489894399 1.09189354 0.057525778 0.015177862 4.29E-10 9.367412827 0.153593524 QIYYSDKYFDEHYEYR ddPTM_HeLa_CUDC101_4h_R1 1 QIYYSDKYFDEHYEYR 16 1 P33552 P33552 CKS2 Cyclin-dependent kinases regulatory subunit 2 0 0 100.18 0.0024431 23826000 1196.2 1513.1 1203.3 1249.3 1456.5 1077.4 921.53 1229.7 1304.1 1147.4 FALSE FALSE TRUE 1055.983249 1559.716818 1268.354038 1300.251854 1349.056897 1056.85039 957.0737208 1369.684077 1250.344446 1140.575214 0.925833945 1.367482651 1.11203016 1.13999659 1.18278644 0.926594211 0.839114956 1.200871333 1.09624024 1 10.15554587 GLDDTEEPS(ph)PPEDK ddPTM_HeLa_CUDC101_4h_R1 2 GLDDTEEPSPPEDK 14 0 O94806;O94806-2 O94806 PRKD3 Serine/threonine-protein kinase D3 1 0 GLDDTEEPS(1)PPEDK;GLDDTEEPS(1)PPEDK ; 231.17 2.97E-43 23711000 7169.5 6847.4 6601.6 6589.7 7661.6 7061.5 6629.8 6566.4 7240.6 7499.1 TRUE FALSE FALSE 6329.102078 7058.360278 6958.502465 6858.456449 7096.419032 6926.813653 6885.513607 7313.892434 6942.139403 7454.49502 0.849031633 0.946859614 0.933463963 0.920043065 0.951965091 0.929212996 0.923672709 0.98113855 0.931268904 1 12.86389491 -5.761346276 24.99997034 0.928416519 0.94363241 0.04085769 0.037353024 12.49315986 3352784.707 0.008338393 0.015855377 1.73E-06 5.761346276 0.015215891 QKDFLDGVYAFEYYPSTPGR ddPTM_HeLa_CUDC101_4h_R1 1 QKDFLDGVYAFEYYPSTPGR 20 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 0 77.391 0.0063752 10661000 1258.8 1178.9 1042.5 1024.4 1437.8 1181.3 1237.6 1312.6 1318.9 1257.5 FALSE FALSE TRUE 1111.245372 1215.220512 1098.860703 1066.17946 1331.736359 1158.768671 1285.334647 1462.021078 1264.534384 1250.020334 0.888981836 0.972160595 0.879074263 0.852929693 1.065371756 0.926999857 1.02825099 1.169597836 1.011611051 1 10.28773585 -3.7822326 1.071732478 0.94137048 1.568561098 0.530845285 0.062943847 2.473310721 1.113943819 0.009622438 2.258235382 0.000165108 3.7822326 0.627190619 IEVKEESPQS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 IEVKEESPQSK 11 1 P11171;A0A2R8Y5G2;P11171-7;P11171-2;A0A2R8Y5Z6;A0A2R8Y570;A0A3B3IU06;A0A2R8Y6G5;A0A2R8YFR9;A0A2U3TZH6;P11171-5;A0A2R8Y6T6;A0A3B3ITC5 P11171 EPB41 Protein 4.1 1 0 IEVKEES(0.171)PQS(0.829)K 121.56 0.019517 7223100 1846.1 2003.3 1805 1896.2 1665.6 1526.4 1530.1 1819.3 1772.3 2042.2 TRUE FALSE FALSE 1629.702957 2065.019299 1902.58376 1973.535232 1542.732006 1497.286463 1589.11647 2026.401758 1699.245044 2030.052904 0.802788417 1.017224376 0.937208955 0.972159508 0.759946701 0.737560317 0.782795595 0.998201453 0.83704471 1 10.98730161 -5.761291863 25 0.920508403 0.811133435 0.247908832 0.091254813 4.86940583 824955.0507 0.015003665 0.02854911 1.73E-06 5.761291863 -0.109374968 CHSSQPGMLLDSWS(ph)RMVK ddPTM_HeLa_CUDC101_4h_R1 1 CHSSQPGMLLDSWSRMVK 18 1 O95714;A0A3B3IRP6;A0A0J9YVP0 O95714 HERC2 E3 ubiquitin-protein ligase HERC2 1 0 CHSSQPGMLLDS(0.002)WS(0.998)RMVK 57.537 0.02737 67279000 2124 2064.8 1131.8 1852.3 5076.2 4593.4 4537.2 2641.7 3552.8 3224.2 TRUE FALSE FALSE 1875.02794 2128.414041 1192.988532 1927.8448 4701.738839 4505.788548 4712.201324 2942.42045 3406.35208 3205.022315 0.585028045 0.664087121 0.372224719 0.60150745 1.466990984 1.405852473 1.470255387 0.918065511 1.062816962 1 11.64611869 -5.76123438 24.99999997 0.739172372 1.332828689 0.601937525 0.238751814 3.134320058 382139.6604 0.037636702 0.071646026 1.73E-06 5.76123438 0.593656317 DAPTSPASVASSSS(ph)TPSSK ddPTM_HeLa_CUDC101_4h_R1 1 DAPTSPASVASSSSTPSSK 19 0 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 DAPTSPAS(0.001)VAS(0.003)S(0.015)S(0.009)S(0.969)T(0.003)PSSK 125.36 4.87E-05 5967600 1813.8 1616.7 1630.9 1815.2 2008.9 2078.1 2156.5 1504.2 1737.5 1929.3 TRUE FALSE FALSE 1601.189114 1666.508611 1719.071387 1889.231702 1860.707449 2038.463705 2239.676927 1675.432048 1665.879515 1917.824438 0.834898691 0.868957856 0.896365357 0.985091057 0.970217822 1.062904229 1.167821665 0.873610751 0.86862983 1 10.90525494 -5.761187027 1.776319599 0.914380442 1.043326301 0.333719165 0.081381523 0.351517142 2.250786057 0.01391244 0.032020336 1.73E-06 5.761187027 0.128945859 ASPDQNASTHT(ph)PQSSVK ddPTM_HeLa_CUDC101_4h_R1 2 ASPDQNASTHTPQSSVK 17 0 Q14677-2;Q14677;Q14677-3;H0YD52 Q14677-2 CLINT1 Clathrin interactor 1 1 0 ASPDQNASTHT(1)PQSSVK;ASPDQNASTHT(0.926)PQS(0.056)S(0.019)VK ; 141.93 0.00026877 28671000 8102.2 3213.5 3069.4 3038 10673.5 7166.3 6727.9 4828.2 6699.8 6029.2 TRUE FALSE FALSE 7152.472398 3312.504126 3235.341048 3161.902771 9886.13717 7029.614767 6987.397357 5377.822772 6423.631408 5993.33805 1.193403799 0.552697695 0.539822887 0.527569569 1.649521033 1.172904767 1.16586071 0.89730009 1.071795276 1 12.54914404 -5.760840304 24.99999985 0.967376264 1.213965987 0.221086645 0.300870789 29.20542092 1218677.591 0.049862735 0.095125767 1.73E-06 5.760840304 0.246589723 S(ph)SSPGKPQAVSSLNSSHSR ddPTM_HeLa_CUDC101_4h_R1 2 SSSPGKPQAVSSLNSSHSR 19 1 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 S(0.333)S(0.333)S(0.333)PGKPQAVSSLNSSHSR;S(0.333)S(0.333)S(0.333)PGKPQAVSSLNSSHSR ; 140.96 2.05E-05 28657000 10854.7 4561.7 3866.2 4151.3 13747.3 9112.9 9395.2 7070.6 8707.1 6986 TRUE FALSE FALSE 9582.328521 4702.24057 4075.218467 4320.607957 12733.18907 8939.086616 9757.576011 7875.488524 8348.189653 6944.446961 1.379854807 0.677122397 0.586831247 0.62216732 1.833578561 1.287228006 1.405090436 1.134069936 1.202138874 1 12.76164409 -5.760749122 24.99999997 1.057493835 1.405158432 0.334650239 0.308998418 24.98470403 904840.6935 0.052173661 0.099582399 1.73E-06 5.760749122 0.347664597 APPQTHLPSGASSGTGSASAT(ph)HGGGSPPGTR ddPTM_HeLa_CUDC101_4h_R1 1 APPQTHLPSGASSGTGSASATHGGGSPPGTR 31 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;A0A0G2JJR8;A0A1B0GX79;F6X9W3;F6VEM6;F6U341;F6TC96;F6S6P2;X6REW1;A0A0G2JJM1;F6XTU0;F6U1F2;F6UR09;F6WML8 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 APPQTHLPS(0.003)GAS(0.002)S(0.006)GT(0.001)GS(0.015)AS(0.06)AT(0.469)HGGGS(0.405)PPGT(0.039)R 92.251 6.71E-08 16672000 977.09 383.32 210.48 183.35 1434 1025.4 635.57 573.11 809.03 614.25 TRUE FALSE FALSE 862.5569914 395.1296349 221.8591855 190.8278055 1328.216677 1005.842203 660.0841478 638.3505258 775.681441 610.5964137 1.412646671 0.647120792 0.363348327 0.312526902 2.17527756 1.647311024 1.08104819 1.045454103 1.270366847 1 9.254075306 -5.760555756 24.9999998 1.029314566 1.469687821 0.267870316 0.465800383 37.2624863 1054194.197 0.076894064 0.146946491 1.74E-06 5.760555756 0.440373255 ASALLFSS(ph)DEEDQWNIPASQTHLASDSR ddPTM_HeLa_CUDC101_4h_R1 2 ASALLFSSDEEDQWNIPASQTHLASDSR 28 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;Q9Y4E1-5 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 0 AS(0.001)ALLFS(0.06)S(0.94)DEEDQWNIPASQTHLASDSR;AS(0.003)ALLFS(0.23)S(0.768)DEEDQWNIPASQTHLASDSR ; 112.05 1.40E-10 22103000 3273.7 2054.71 1390.78 1688.65 5457 3994.8 3470.7 3744.6 3526.7 3126 TRUE FALSE FALSE 2889.961849 2118.01318 1465.969774 1757.520446 5054.447982 3918.605846 3604.566062 4170.870128 3381.327933 3107.406413 0.930023777 0.681601599 0.471766348 0.565590789 1.62658092 1.261053536 1.159991833 1.342235155 1.088151173 1 11.60149523 -5.760532921 24.99998657 0.876055676 1.327902095 0.591950347 0.21976979 17.20274853 474422.8044 0.035566103 0.06797076 1.74E-06 5.760532921 0.451846419 SSS(ph)VGSSSSYPISPAVSR ddPTM_HeLa_CUDC101_4h_R1 5 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 S(0.076)S(0.007)S(0.916)VGSSSSYPISPAVSR;S(0.009)S(0.009)S(0.982)VGSSSSYPISPAVSR;S(0.068)S(0.068)S(0.864)VGS(0.001)SSSYPISPAVSR;S(0.003)S(0.093)S(0.897)VGS(0.007)SSSYPISPAVSR;SS(0.006)S(0.689)VGS(0.304)S(0.001)SSYPISPAVSR ;;;; 298.1 1.88E-123 7596674000 11546.7 10666.2 11789.5 10391.7 15069.7 14288.9 13702.6 10836.8 12129.9 12051.2 TRUE FALSE FALSE 10193.21333 10994.81298 12426.87603 10815.51844 13958.03825 14016.36304 14231.11387 12070.41751 11629.90039 11979.51893 0.8508867 0.917800877 1.037343495 0.902834121 1.165158496 1.170027204 1.187953703 1.007587832 0.970815311 1 13.54828235 -5.760494163 24.99999996 0.93427167 1.139297355 0.641533587 0.067690544 12.56851345 332407.039 0.011297666 0.021598012 1.74E-06 5.760494163 0.205025685 TQLS(ph)PSIKR ddPTM_HeLa_CUDC101_4h_R1 1 TQLSPSIKR 9 1 Q8NFC6;H0Y9Y2 Q8NFC6;H0Y9Y2 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 T(0.001)QLS(0.881)PS(0.118)IKR 127.51 0.0079543 128530000 9396.2 8829.4 8818.5 8143.1 8681.2 7565.1 7634.5 7184.3 8764.9 9023.1 TRUE FALSE FALSE 8294.79168 9101.423349 9295.254785 8475.210815 8040.805171 7420.808322 7928.965222 8002.131672 8403.607112 8969.4302 0.924784685 1.01471589 1.036326119 0.944899579 0.896467779 0.827344453 0.883998765 0.892156078 0.936916496 1 13.13080062 -5.760422354 3.145032899 0.973474852 0.869097601 0.664213645 0.035982296 0.13588676 2.781347312 0.006192747 0.012554694 1.74E-06 5.760422354 -0.10437725 DNS(ph)PEPNDPEEPQEVSSTPSDKK ddPTM_HeLa_CUDC101_4h_R1 2 DNSPEPNDPEEPQEVSSTPSDKK 23 1 G5E9C0;Q9HB58-5;Q9HB58-3;Q9HB58-7;Q9HB58;Q9HB58-6;Q9HB58-2 G5E9C0 SP110 Sp110 nuclear body protein 1 0 DNS(1)PEPNDPEEPQEVSSTPSDKK;DNS(0.997)PEPNDPEEPQEVS(0.002)STPSDKK ; 130.53 7.09E-08 83721000 6736.3 6149.9 6194.2 5924.1 5416.3 5158.6 5064.6 4798.2 6408.4 5841.6 TRUE FALSE FALSE 5946.681126 6339.37113 6529.077188 6165.710404 5016.75034 5060.2083 5259.943319 5344.407693 6144.24304 5806.853903 1.024079687 1.091704946 1.124374282 1.061798782 0.863936035 0.871419943 0.905816369 0.920362004 1.058101881 1 12.50354102 -5.760277785 24.9999442 1.030898912 0.890131369 0.786866106 0.041626083 14.49236749 311892.1831 0.007298656 0.013966478 1.74E-06 5.760277785 -0.140767543 QKSEEELK ddPTM_HeLa_CUDC101_4h_R1 1 QKSEEELK 8 1 H0YM11;V9GY01;Q9Y448-3;Q9Y448-2;Q9Y448 H0YM11 KNSTRN Small kinetochore-associated protein 0 0 101.64 0.035639 2277400 1374.4 1307.2 972.42 1394.7 1521.9 1009.7 1490.8 1488.4 1279.3 1384.4 FALSE FALSE TRUE 1213.294915 1347.473283 1024.991967 1451.581894 1409.632469 990.4416548 1548.300655 1657.83344 1226.566713 1376.165527 0.881648967 0.979150586 0.744817354 1.054801814 1.02431898 0.719711136 1.125083157 1.204675896 0.891293008 1 10.42643829 -4.543442293 24.7351508 0.93251659 1.184777798 0.468731217 0.107382537 112.4762046 135293.5549 0.014114333 0.052822792 2.86E-05 4.543442293 0.252261208 QKVDSLLENLEK ddPTM_HeLa_CUDC101_4h_R1 2 QKVDSLLENLEK 12 1 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2D6;G3V2Q1;P07910-4;B4DY08;G3V4W0;G3V5V7;G3V576;A0A0G2JPF8;P0DMR1;O60812;B7ZW38;A0A0G2JNQ3;B2RXH8 P07910-2;A0A0G2JNQ3 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 0 0 ; ; 147.52 0.0010233 28202000 11044.9 9908.1 8621.9 9554.1 10350.6 9809.9 10132.8 9611.7 11166.9 10639.8 FALSE FALSE TRUE 9750.233565 10213.35682 9088.025994 9943.757494 9587.056859 9622.792502 10523.62549 10705.85708 10706.59566 10576.514 0.921875919 0.965663811 0.859264782 0.940173435 0.906447707 0.90982648 0.994999439 1.012229273 1.012299105 1 13.36857658 -9.32804111 0.97994387 1.001128111 0.935997038 0.278643929 0.042553895 0.685282997 1.145426828 0.032056789 0.007893826 4.70E-10 9.32804111 -0.065131074 QLATK(ac)AAR ddPTM_HeLa_CUDC101_4h_R1 2 QLATKAAR 8 1 K7EK07;P84243;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;K7EP01;Q6NXT2;Q71DI3;P68431;Q5TEC6 K7EK07;Q71DI3 H3F3B;H3F3A;H3F3C;HIST2H3A;HIST1H3A;HIST2H3PS2 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1 0 1 ; QLATK(1)AAR;QLATK(1)AAR 149.82 0.0016495 167219000 19923.6 5761.4 589.23 10250.1 3776.3 8807.3 5376.2 1196.91 291.43 0 FALSE TRUE FALSE 17588.18581 5938.901905 621.0855561 10668.14338 3497.729872 8639.315426 5583.561835 1333.161396 279.417132 0 0 KAS(ph)PEPEGEAAGK ddPTM_HeLa_CUDC101_4h_R1 4 KASPEPEGEAAGK 13 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 0 KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK ;;; 109.67 0.0025248 1384720000 28122.6 21479.7 27504.2 25286.2 24082 21603 24414.1 20806.7 25668.1 26123.6 TRUE FALSE FALSE 24826.11146 22141.4641 28991.16025 26317.48053 22305.51884 21190.95877 25355.76002 23175.25062 24610.05005 25968.21567 0.95601915 0.8526371 1.116409407 1.013449706 0.858954621 0.816034457 0.976415182 0.892446787 0.947698924 1 14.66445927 -5.760257749 24.99986658 0.981768331 0.887428764 0.295001401 0.071982388 31.31894424 662590.5259 0.010382674 0.019869321 1.74E-06 5.760257749 -0.094339568 QLDDLKVELSQLR ddPTM_HeLa_CUDC101_4h_R1 2 QLDDLKVELSQLR 13 1 F2Z388;P42766 F2Z388 RPL35 60S ribosomal protein L35 0 0 ; ; 107.09 0.0067568 26026000 4383.6 3588.7 3730.6 3849.9 4464.7 4600.9 4384.5 4271.2 4200.5 4032.4 FALSE FALSE TRUE 3869.761053 3699.263593 3932.28752 4006.915563 4135.347976 4513.145498 4553.611634 4757.416143 4027.353612 4008.415105 0.965409258 0.922874377 0.981008059 0.999625901 1.031666598 1.125917695 1.136012991 1.186857154 1.004724687 1 11.9688162 -5.265986358 1.349260292 0.977625224 1.172569774 0.917466448 0.023208548 0.09936793 0.329767164 0.003848216 0.015680376 5.42E-06 5.265986358 0.19494455 QLEAIDQLHLEYAK ddPTM_HeLa_CUDC101_4h_R1 2 QLEAIDQLHLEYAK 14 0 O43707;O43707-2;F5GXS2;O43707-3 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 106.76 0.0040318 26583000 6578.8 6175.3 5417.9 5727 4497.7 5396.6 4939.3 5559.6 5787.3 6540.4 FALSE FALSE TRUE 5807.643037 6365.553673 5710.808062 5960.571814 4165.913632 5293.668846 5129.810456 6192.482391 5548.745044 6501.49741 0.893277759 0.979090396 0.878383502 0.916799844 0.640762177 0.814223019 0.789019841 0.952470177 0.853456472 1 12.66655632 -5.974248846 24.99638785 0.944036868 0.796889344 0.321917133 0.082701726 160.2711103 155572.769 0.011752934 0.021303528 1.06E-06 5.974248846 -0.147147524 EGS(ph)PANWK ddPTM_HeLa_CUDC101_4h_R1 1 EGSPANWK 8 0 O96019-2;O96019 O96019-2 ACTL6A Actin-like protein 6A 1 0 EGS(1)PANWK 105.4 0.013901 220970000 5188.8 4214.7 4719.7 4671.5 4435.8 4332.1 3835.3 4147.2 4710.2 4907.5 TRUE FALSE FALSE 4580.57673 4344.549911 4974.861258 4862.023962 4108.579871 4249.47241 3983.228806 4619.300484 4516.043562 4878.309972 0.938967953 0.890585046 1.019791954 0.996661547 0.842213778 0.871095202 0.816518185 0.946905898 0.925739362 1 12.25216572 -5.760140521 24.99995361 0.969435748 0.865558032 0.469914385 0.047816594 20.82511473 400819.5731 0.006910536 0.013236751 1.74E-06 5.760140521 -0.103877716 QLEEAEEESQR ddPTM_HeLa_CUDC101_4h_R1 2 QLEEAEEESQR 11 0 P35749-4;P35749-3;P35749;P35749-2 P35749-4 MYH11 Myosin-11 0 0 ; ; 170.89 4.61E-06 294420000 2602.3 2521 2375.5 2256.3 2385.3 2379.1 2171.2 2263.3 2523.1 2389.8 FALSE FALSE TRUE 2297.262339 2598.669022 2503.926715 2348.321667 2209.341171 2333.722631 2254.943911 2520.944923 2419.09675 2375.585363 0.96703001 1.093906816 1.054025149 0.988523377 0.930019693 0.98237793 0.949216116 1.061188944 1.01831607 1 11.21406733 -4.235397812 22.67154323 0.990826675 1.061189269 0.125574362 0.046401806 3218.34758 2801706.934 0.006573061 0.547247044 5.82E-05 4.235397812 0.070362594 LSPS(ph)PTSQR ddPTM_HeLa_CUDC101_4h_R1 7 LSPSPTSQR 9 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LS(0.036)PS(0.938)PT(0.024)S(0.002)QR;LS(0.135)PS(0.855)PT(0.01)SQR;LS(0.134)PS(0.821)PT(0.045)SQR;LSPS(0.999)PT(0.001)SQR;LS(0.008)PS(0.897)PT(0.094)S(0.001)QR;LS(0.002)PS(0.977)PT(0.019)S(0.001)QR;LSPS(0.982)PT(0.018)S(0.001)QR ;;;;;; 257.09 2.62E-68 18663708000 16294.83 20861 14137.2 15803.85 14261.3 13287.91 13896.55 13710.61 15346.74 15716.1 TRUE FALSE FALSE 14384.77473 21503.70268 14901.49979 16448.39931 13209.27231 13034.46526 14432.54459 15271.37042 14714.14088 15622.61994 0.920765837 1.376446638 0.95384128 1.052857932 0.845522221 0.834332865 0.923823574 0.977516606 0.941848483 1 13.9313488 -5.760062275 24.99999376 1.001114803 0.892981587 0.196159945 0.130209563 60.25102065 1093760.375 0.019582271 0.037534326 1.74E-06 5.760062275 -0.108133216 APYS(ph)PTTSK ddPTM_HeLa_CUDC101_4h_R1 2 APYSPTTSK 9 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 0 APY(0.001)S(0.993)PT(0.006)TSK;APY(0.001)S(0.482)PT(0.47)T(0.039)S(0.008)K ; 131.42 0.0030143 195643000 9162.4 7779.2 7696.3 7332.5 7964.7 7332.3 7235.5 6105.6 7623.1 7553 TRUE FALSE FALSE 8088.397361 8018.867931 8112.385258 7631.551044 7377.159949 7192.448594 7514.575659 6800.636824 7308.872591 7508.07442 1.077293179 1.068032558 1.080488126 1.016445844 0.982563509 0.957961814 1.0008659 0.905776427 0.97346832 1 12.87422723 -5.759952379 2.454352303 1.0433885 0.960466911 0.484623923 0.038399023 0.187256054 2.303108543 0.005849315 0.012351918 1.74E-06 5.759952379 -0.082921589 SKSATLLY(ph)DQPLQVFTGSSSSSDLISGTK ddPTM_HeLa_CUDC101_4h_R1 1 SKSATLLYDQPLQVFTGSSSSSDLISGTK 29 1 Q96RT1-7;Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8 Q96RT1-7 ERBB2IP Protein LAP2 1 0 S(0.074)KS(0.074)AT(0.074)LLY(0.777)DQPLQVFT(0.001)GSSSSSDLISGTK 72.514 0.00014535 0 907.62 975.75 825.4 783.85 1323.7 1139.5 1053 1100.5 925.13 988.33 TRUE FALSE FALSE 801.2301595 1005.811701 870.0236207 815.8187911 1226.053288 1117.765936 1093.614563 1225.776472 886.9957498 982.4513692 0.815541801 1.023777596 0.885564057 0.830391016 1.247953157 1.137731567 1.1131488 1.247671396 0.902839344 1 9.940242186 -5.759838181 24.99999999 0.912672748 1.177885387 0.77744708 0.072518576 18.38976423 287116.0837 0.012646619 0.02426426 1.74E-06 5.759838181 0.26521264 QLEMILNKPGLK ddPTM_HeLa_CUDC101_4h_R1 2 QLEMILNKPGLK 12 1 A0A0A0MSS8;P42330;S4R3Z2;P42330-2;P17516;A6NHU4;Q04828;H0Y804 A0A0A0MSS8;Q04828 AKR1C3;AKR1C4;AKR1C1 Aldo-keto reductase family 1 member C3;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C1 0 0 ; ; 120.03 0.0052978 1617550 685.9 749.174 466.939 450.5 847.19 420.19 522.04 459.17 665.566 753.44 FALSE FALSE TRUE 605.4998418 772.255163 492.1831348 468.8733372 784.6944815 412.1755758 542.1752577 511.4400568 638.1310878 748.9585054 0.808455792 1.031105405 0.657156747 0.626033797 1.047714227 0.550331658 0.723905602 0.682868347 0.852024622 1 9.548741981 -13.52287874 0.039194503 2.284786045 0.000364816 0.220509504 0.150355879 559.6648783 1.751965003 87.85190247 29.18913066 3.00E-14 13.52287874 -2.28442123 SAS(ph)WGSADQLKEQIAK ddPTM_HeLa_CUDC101_4h_R1 1 SASWGSADQLKEQIAK 16 1 Q86VQ1;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 S(0.045)AS(0.932)WGS(0.022)ADQLKEQIAK 89.913 0.0050176 54921000 1245.2 1235 961.89 987.07 1621.5 1384.5 1197.4 1504 1290.9 1151.3 TRUE FALSE FALSE 1099.239544 1273.048886 1013.892683 1027.326981 1501.885175 1358.092969 1243.584119 1675.209281 1237.688556 1144.452016 0.960494217 1.112365453 0.885919784 0.897658413 1.31231817 1.186675326 1.086619711 1.463765415 1.081468282 1 10.16044126 -5.759730846 25 0.978646081 1.244387943 0.584644669 0.111963638 22.60714963 330787.7283 0.014613777 0.028051743 1.74E-06 5.759730846 0.265741862 QLEVEPEEPEAENK ddPTM_HeLa_CUDC101_4h_R1 1 QLEVEPEEPEAENK 14 0 K7EJE8;K7EKE6;P36776-3;P36776-2;P36776 K7EJE8 LONP1 "Lon protease homolog, mitochondrial" 0 0 122.45 0.00053823 0 931.62 803.08 873.48 903.57 974.91 944.24 779.15 791.05 748.99 959.67 FALSE FALSE TRUE 822.4169158 827.8219429 920.7029709 940.4214902 902.9928316 926.2301952 809.2020765 881.0999345 718.1163152 953.9618402 0.862106723 0.867772596 0.965136059 0.985806193 0.946571229 0.970930027 0.848254136 0.923621782 0.75277258 1 9.897787747 -9.601531258 1.427587316 0.999601894 0.914606233 0 0.08960098 0.445518085 1.641507555 0.035581028 0.008390154 2.50E-10 9.601531258 -0.084995661 QLFHPEQLITGK ddPTM_HeLa_CUDC101_4h_R1 2 QLFHPEQLITGK 12 0 Q9BQE3;F5H5D3;A0A1W2PQM2;P0DPH8;P0DPH7;F8VVB9;F8VQQ4;F8VS66;P0DPH7-2;F8VRZ4;Q9NY65;C9J2C0;Q9NY65-2;F8VX09;F8VWV9;Q6PEY2;C9K0S6;P68363;P68363-2;Q71U36-2;Q71U36;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 Q9BQE3;P68363;P68366-2 TUBA1C;TUBA1B;TUBA1A;TUBA8;TUBA3E;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-8 chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain 0 0 ; ; 98.942 0.0081549 830800 2391.7 1672.48 1846.32 2095.86 2052.72 2061.54 1903.94 1748.89 1972.32 2450.6 FALSE FALSE TRUE 2111.348552 1724.007126 1946.137644 2181.33823 1901.294935 2022.219559 1977.375604 1947.976568 1891.020135 2436.023722 0.866719208 0.707713603 0.798899299 0.895450323 0.780491141 0.830131308 0.811722639 0.799654187 0.776273284 1 11.25031247 -8.388393445 0.797162288 0.987833032 0.807798632 0 0.081247319 0.235822576 0.315521166 0.020266456 0.011141115 4.09E-09 8.388393445 -0.1800344 QLFHPEQLITGKEDAANNYAR ddPTM_HeLa_CUDC101_4h_R1 2 QLFHPEQLITGKEDAANNYAR 21 1 Q9BQE3;F5H5D3;A0A1W2PQM2;P0DPH8;P0DPH7;F8VVB9;F8VQQ4;F8VS66;P0DPH7-2;F8VRZ4;Q9NY65;C9J2C0;Q9NY65-2;F8VX09;F8VWV9;C9K0S6;P68363;P68363-2;Q71U36-2;Q71U36;P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 Q9BQE3;P68363;P68366-2 TUBA1C;TUBA1B;TUBA1A;TUBA8;TUBA4A Tubulin alpha-1C chain;Tubulin alpha-8 chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-4A chain 0 0 ; ; 87.16 0.00051902 78461000 5880.5 7065.3 6159.8 6078.8 7799.9 6432 6323 8047.9 5974.8 4435.2 FALSE FALSE TRUE 5191.196704 7282.973519 6492.81742 6326.719739 7224.516917 6309.320316 6566.880228 8964.040405 5728.516215 4408.819233 1.177457371 1.651910213 1.472688508 1.435014548 1.638651198 1.431068044 1.489487294 2.03320661 1.299331162 1 12.10617661 -1 0.081780896 0.456793418 4.080312512 0.480651405 0.19296499 68.70553659 0.412328124 2.756747507 28.23147259 0.1 1 3.623519094 QLFWEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 QLFWEKK 7 1 A0A087WT34;A0A087X1H1;A0A0A0MTS6;K7EIE8;O95983-2;O95983 A0A087WT34 MBD3 Methyl-CpG-binding domain protein 3 0 1 QLFWEK(1)K 109.21 0.0085287 417950 439.96 435.76 352.46 404.91 426.77 320.69 448.61 337.42 367.28 337.46 FALSE TRUE FALSE 388.3885557 449.1852491 371.5150537 421.42398 395.2880273 314.5733726 465.913038 375.8305289 352.1405629 335.4527729 1.15780398 1.339041693 1.107503302 1.256284085 1.17837162 0.937757556 1.388907994 1.12036793 1.049747062 1 8.389965859 -8.727171224 0.837399908 1.008327059 1.187327139 0.217369755 0.120369385 0.570723275 0.793413672 0.055450999 0.023558687 1.87E-09 8.727171224 0.179000079 NKPPPPPPASASPSAVPNGPQS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 NKPPPPPPASASPSAVPNGPQSPK 24 1 H0Y7W6 H0Y7W6 FNBP1 1 0 NKPPPPPPASASPS(0.013)AVPNGPQS(0.987)PK;NKPPPPPPASASPSAVPNGPQS(1)PK ; 135.08 5.84E-09 60635000 5812.2 5240.9 5152 5046.8 5151.3 4661.1 4341.4 4631.3 5233.5 5457.7 TRUE FALSE FALSE 5130.902727 5402.365917 5430.532704 5252.630318 4771.298862 4572.197283 4508.849252 5158.508472 5017.772915 5425.237358 0.945747142 0.995784251 1.000976058 0.968184426 0.879463616 0.842764469 0.831087924 0.950835536 0.924894633 1 12.40547054 -5.759728255 4.545738156 0.977764778 0.869130681 0.613319582 0.03742454 0.086016421 4.373039752 0.005195298 0.010164374 1.74E-06 5.759728255 -0.108634097 QLHDDYFYHDEL ddPTM_HeLa_CUDC101_4h_R1 3 QLHDDYFYHDEL 12 0 Q14257;Q14257-2;A8MXP8 Q14257 RCN2 Reticulocalbin-2 0 0 ;; ;; 151.26 0.00049667 91285900 12075.9 11195.3 10545.2 10543.3 11527.1 10263.6 9704.5 9431.7 11331.1 10845.9 FALSE FALSE TRUE 10660.38131 11540.21392 11115.30541 10973.30135 10676.7688 10067.83893 10078.80582 10505.3666 10864.02726 10781.3881 0.988776325 1.070382942 1.030971643 1.01780042 0.990296305 0.933816577 0.934833782 0.974398334 1.007664983 1 13.39625532 -5.398388358 4.42298001 1.005310505 0.946733954 0.583745233 0.025425558 0.156599112 4.921206667 0.004121436 0.009494485 4.00E-06 5.398388358 -0.058576551 FDLSHGS(ph)PQMVR ddPTM_HeLa_CUDC101_4h_R1 2 FDLSHGSPQMVR 12 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 FDLS(0.139)HGS(0.861)PQMVR;FDLS(0.053)HGS(0.947)PQMVR ; 95.751 0.0097196 71336000 16091.4 13926.5 13926 13676.9 14031.9 13512.1 13208.5 11688.8 13178.2 13414.7 TRUE FALSE FALSE 14205.19048 14355.55896 14678.88168 14234.7031 12996.79469 13254.37921 13717.95627 13019.40574 12634.98902 13334.90877 1.065263417 1.076539721 1.10078606 1.067476602 0.97464444 0.993960996 1.028725169 0.976340069 0.947512221 1 13.70292033 -5.759480732 24.99995344 1.043468218 0.995978441 0.240963774 0.042947363 57.44306603 733184.1735 0.005826878 0.011201346 1.74E-06 5.759480732 -0.047489776 DHAPSIPT(ph)SPFGDSLESSTELRR ddPTM_HeLa_CUDC101_4h_R1 2 DHAPSIPTSPFGDSLESSTELRR 23 1 Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5;J3QL92 Q9Y4B5-2 MTCL1 Microtubule cross-linking factor 1 1 0 DHAPS(0.002)IPT(0.499)S(0.499)PFGDSLESSTELRR;DHAPS(0.032)IPT(0.484)S(0.484)PFGDSLESSTELRR ; 89.297 0.0026574 28033000 3021.3 2785.3 2481.9 2553.01 3706.9 3327.2 3449.5 2780.9 3191.4 2913 TRUE FALSE FALSE 2667.147794 2871.111792 2616.079021 2657.132783 3433.449372 3263.739203 3582.548371 3097.466415 3059.849141 2895.673346 0.921080341 0.991517843 0.903444107 0.917621729 1.185717089 1.127108901 1.237207358 1.069687787 1.056696932 1 11.49968315 -5.75937887 24.99995421 0.95650331 1.158820003 0.713408407 0.058785023 18.07562213 219304.0824 0.00740915 0.014248648 1.74E-06 5.75937887 0.202316692 QLIVGVNK ddPTM_HeLa_CUDC101_4h_R1 2 QLIVGVNK 8 0 Q5VTE0;P68104;A0A087WV01;A0A2U3TZH3;Q05639;A0A2R8Y488 Q5VTE0;A0A2U3TZH3 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 0 ; ; 170.73 0.012992 172861000 19589.8 16498.7 16832.9 15872.7 17696.8 15174.6 16582.6 16933.2 16993.2 16991.1 FALSE FALSE TRUE 17293.51334 17007.00539 17742.93749 16520.05731 16391.34232 14885.16979 17222.19644 18860.80704 16292.7331 16890.03618 1.023888472 1.006925338 1.050497305 0.978094845 0.97047408 0.881298869 1.019666048 1.116682453 0.964635773 1 14.0438848 AEQLVLSGADS(ph)DEDTSR ddPTM_HeLa_CUDC101_4h_R1 4 AEQLVLSGADSDEDTSR 17 0 H7C1N2;J3KR05;O75128-2 H7C1N2 COBL Protein cordon-bleu 1 0 AEQLVLS(0.004)GADS(0.996)DEDTSR;AEQLVLS(0.045)GADS(0.955)DEDTSR;AEQLVLS(0.055)GADS(0.945)DEDTSR;AEQLVLSGADS(0.774)DEDT(0.204)S(0.021)R ;;; 264.1 2.18E-70 64224000 10708.4 10165.1 9715.4 9536.4 9782 8675.9 8700.3 8939.9 9819.1 10062.3 TRUE FALSE FALSE 9453.177585 10478.27468 10240.64391 9925.335612 9060.401348 8510.421663 9035.873485 9957.58208 9414.352542 10002.44899 0.945086308 1.047570919 1.02381366 0.99229055 0.905818301 0.850833798 0.903366115 0.995514407 0.941204754 1 13.28806565 -5.759336878 24.98807346 0.984874242 0.9086284 0.412271291 0.044884329 44.93887208 534082.6625 0.006837967 0.013157226 1.74E-06 5.759336878 -0.076245842 (ac)S(ph)DQEAKPSTEDLGDKK ddPTM_HeLa_CUDC101_4h_R1 6 SDQEAKPSTEDLGDKK 16 2 B8ZZJ0;B9A032;B8ZZN6;P63165 B8ZZJ0 SUMO1 Small ubiquitin-related modifier 1 1 0 S(0.999)DQEAKPS(0.001)T(0.001)EDLGDKK;S(0.999)DQEAKPSTEDLGDKK;S(0.96)DQEAKPS(0.01)T(0.03)EDLGDKK;S(0.946)DQEAKPS(0.04)T(0.015)EDLGDKK;S(0.963)DQEAKPS(0.009)T(0.029)EDLGDKK;S(1)DQEAKPSTEDLGDKK ;;;;; 58.817 7.37E-05 11919839000 18005.73 23109.5 16137.31 18912.6 15812.66 17296 14220.3 14112.4 17800.8 20229.1 TRUE FALSE FALSE 15895.12562 23821.4763 17009.74179 19683.93758 14646.19158 16966.10762 14768.78173 15718.89857 17067.04349 20108.77641 0.790457127 1.184630821 0.845886465 0.978872964 0.728348223 0.843716558 0.734444574 0.781693438 0.848736051 1 14.29553768 -5.759068773 25 0.922644091 0.774483527 0.366758538 0.10732521 64.50782573 680273.0889 0.016891875 0.032542458 1.74E-06 5.759068773 -0.148160564 QLLEEELAR ddPTM_HeLa_CUDC101_4h_R1 1 QLLEEELAR 9 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 122.96 0.0015723 0 2851 2606.7 2420.8 2642.2 3603.8 3136.7 2982.6 3035.1 2861.1 2914 FALSE FALSE TRUE 2516.810102 2687.009337 2551.675771 2749.960337 3337.954854 3076.872674 3097.639881 3380.603516 2743.164247 2896.667398 0.868864027 0.927620941 0.880900504 0.949353156 1.152343157 1.062211242 1.069380586 1.167066512 0.947006981 1 11.50017833 -5.816489915 7.003292547 0.931286453 1.105852671 0.795607302 0.045600486 0.093089331 9.487439734 0.008649465 0.015840052 1.53E-06 5.816489915 0.174566218 REFITGDVEPTDAESEWHS(ph)ENEEEEKLAGDMK ddPTM_HeLa_CUDC101_4h_R1 2 REFITGDVEPTDAESEWHSENEEEEKLAGDMK 32 2 Q99733;Q99733-2;E9PNJ7;C9J6D1;C9JZI7;A8MXH2;E9PKT8 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 REFITGDVEPT(0.025)DAES(0.213)EWHS(0.762)ENEEEEKLAGDMK;REFITGDVEPTDAES(0.176)EWHS(0.823)ENEEEEKLAGDMK ; 92.819 2.40E-09 32257500 2744.77 1672.59 1505.54 1835.62 3662.51 2921.63 2721.15 2652.97 3053.75 2683.97 TRUE FALSE FALSE 2423.032221 1724.120515 1586.934046 1910.484518 3392.333934 2865.904776 2826.105667 2954.973381 2927.873132 2668.005627 0.908181076 0.646220719 0.594801611 0.716072147 1.271486799 1.074174937 1.059257761 1.107558901 1.097401408 1 11.38154599 -5.759013952 24.99999511 0.884574276 1.11934769 0.434062608 0.160401426 64.16983349 661413.978 0.026028955 0.050167034 1.74E-06 5.759013952 0.234773414 TNS(ph)MQQLEQWIK ddPTM_HeLa_CUDC101_4h_R1 3 TNSMQQLEQWIK 12 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;Q9HAU0-5;Q9HAU0-3 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 T(0.034)NS(0.966)MQQLEQWIK;T(0.067)NS(0.933)MQQLEQWIK;T(0.009)NS(0.991)MQQLEQWIK ;; 190.82 3.34E-11 88606900 5176.5 4948.8 4048.4 3930.7 6553.2 6865.2 6097.6 3973.19 4088.98 3954.85 TRUE FALSE FALSE 4569.718517 5101.266662 4267.26875 4091.010936 6069.783492 6734.257748 6332.786475 4425.481889 3920.430514 3931.326376 1.162385943 1.297594291 1.08545268 1.040618495 1.543953086 1.712973461 1.610852386 1.125696894 0.997228451 1 11.94080043 -5.758784686 24.99958846 1.095353954 1.521732452 0.588009725 0.164031373 35.68927027 336083.7178 0.024081044 0.046462788 1.74E-06 5.758784686 0.426378498 TVSSDGCSTPSREEGGCSLAS(ph)TPATTLHLLQLSGQR ddPTM_HeLa_CUDC101_4h_R1 1 TVSSDGCSTPSREEGGCSLASTPATTLHLLQLSGQR 36 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.115)VS(0.041)S(0.038)DGCS(0.081)T(0.081)PS(0.081)REEGGCS(0.177)LAS(0.258)T(0.115)PAT(0.009)T(0.005)LHLLQLSGQR 40.323 0.024176 33010000 621.88 408.2 391.35 251.08 645.76 510.89 563.36 380.02 475.84 134.08 TRUE FALSE FALSE 548.9841691 420.7761582 412.5075648 261.3201277 598.1235713 501.1456245 585.0889839 423.2799407 456.2256738 133.2824862 4.118952045 3.157025129 3.09498702 1.960648658 4.487638162 3.760026083 4.389841461 3.175810662 3.422997926 1 7.058343407 -5.75876843 24.99997782 2.583981895 3.970701242 0.27940209 0.875572373 82.93757727 776276.5162 0.180738262 0.348758028 1.74E-06 5.75876843 1.386719347 QLLTLSSELSQAR ddPTM_HeLa_CUDC101_4h_R1 1 QLLTLSSELSQAR 13 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 134.75 0.012227 567300 158.22 0 0 0 0 0 0 218.34 0 197.59 FALSE FALSE TRUE 139.6736914 0 0 0 0 0 0 243.194943 0 196.4147259 0.71111619 0 0 0 0 0 0 1.238170621 0 1 7.617759287 -7.416775496 3.252497648 0.881523151 0.143286159 0.0194346 0.461169306 0.162849416 3.140264831 0.064128204 0.07206809 3.83E-08 7.416775496 -0.738236992 EAGS(ph)PAQEFK ddPTM_HeLa_CUDC101_4h_R1 4 EAGSPAQEFK 10 0 Q5JSZ5;Q5JSZ5-5;Q5JT00 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 EAGS(1)PAQEFK;EAGS(1)PAQEFK;EAGS(1)PAQEFK;EAGS(1)PAQEFK ;;; 147.73 0.00063978 531342000 17310.2 15914.2 15777.2 15353.1 15458.2 13973.1 13619.5 13586.5 17084.5 16296.4 TRUE FALSE FALSE 15281.1246 16404.49764 16630.16316 15979.26578 14317.87938 13706.5864 14144.80868 15133.13224 16380.26968 16199.46829 0.943310257 1.012656548 1.026586976 0.986406806 0.883848724 0.846113351 0.873164997 0.934174627 1.011160946 1 13.98365884 -5.758435986 23.95647271 0.981162071 0.880798781 0.744406776 0.031448415 21.55265967 171908.4486 0.005153456 0.009955382 1.74E-06 5.758435986 -0.10036329 KGAANASGSS(ph)PDAPAK ddPTM_HeLa_CUDC101_4h_R1 4 KGAANASGSSPDAPAK 16 1 E7EPJ7;O75962-5;O75962-4;O75962 E7EPJ7 TRIO Triple functional domain protein 1 0 KGAANASGS(0.011)S(0.988)PDAPAK;KGAANASGS(0.007)S(0.993)PDAPAK;KGAANAS(0.01)GS(0.283)S(0.707)PDAPAK;KGAANAS(0.019)GS(0.251)S(0.73)PDAPAK ;;; 161.1 2.96E-05 283879000 51201.9 37013.6 44590 42638.7 41206.1 39103.8 38716.6 31025.5 41377.7 44238.4 TRUE FALSE FALSE 45200.0909 38153.94514 47000.67028 44377.69049 38166.4081 38357.96017 40209.91223 34557.31751 39672.09369 43975.26803 1.027852539 0.867622799 1.068797813 1.009151109 0.867906207 0.872262112 0.914375603 0.78583529 0.90214558 1 15.42440475 -5.758302786 12.89717274 1.005722369 0.864821103 0.40886856 0.065629003 0.114316677 437.9442818 0.007901199 0.015163614 1.74E-06 5.758302786 -0.140901266 APPQTHLPS(ph)GASSGTGSASATHGGGSPPGTR ddPTM_HeLa_CUDC101_4h_R1 1 APPQTHLPSGASSGTGSASATHGGGSPPGTR 31 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;P46379-4;A0A0G2JJR8;A0A1B0GX79;F6X9W3;F6VEM6;F6U341;F6TC96;F6S6P2;X6REW1;A0A0G2JJM1;F6XTU0;F6U1F2;F6UR09;F6WML8 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 APPQTHLPS(0.595)GAS(0.164)S(0.164)GT(0.074)GS(0.002)ASATHGGGS(0.001)PPGTR 115.58 1.73E-11 10571000 884.42 355.6 192.9 247.26 1463 1125 937.99 653.6 734.69 649.82 TRUE FALSE FALSE 780.7496283 366.5556145 203.3287575 257.3443315 1355.077405 1103.542499 974.1685885 728.0031821 704.4057672 645.9548417 1.208675248 0.56746322 0.314772403 0.398393688 2.097789686 1.708389547 1.508106334 1.127018694 1.090487634 1 9.3352895 -5.758212838 24.99999949 0.947505801 1.610029114 0.515150628 0.378019963 72.22186308 559582.3066 0.062770715 0.121478798 1.74E-06 5.758212838 0.662523313 SSRRQAT(ph)VNVS(ph)Y(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 SSRRQATVNVSYK 13 2 O14646-2;O14646 O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 3 0 SS(0.001)RRQAT(0.999)VNVS(1)Y(1)K 65.956 0.03179 9290800 1451.4 914.69 1987.9 967.15 2946.9 3482.1 1484.3 1601.3 3802.2 1653 TRUE FALSE FALSE 1281.269092 942.8705147 2095.371887 1006.594557 2729.513058 3415.684744 1541.549948 1783.585519 3645.471707 1643.167882 0.779755438 0.573812649 1.275202558 0.612593861 1.661128535 2.078719272 0.938157303 1.085455441 2.218563146 1 10.68226417 -5.75792756 24.9997752 0.880613336 1.450518467 0.028574699 0.545066542 72.70718804 517576.4529 0.05018997 0.097265959 1.75E-06 5.75792756 0.569905131 NLLEENFEEHSMS(ph)PEREMGNENIPSTVSTISR ddPTM_HeLa_CUDC101_4h_R1 1 NLLEENFEEHSMSPEREMGNENIPSTVSTISR 32 1 P38398-8;P38398-4;P38398;P38398-7;Q5YLB2 P38398-8 BRCA1 Breast cancer type 1 susceptibility protein 1 0 NLLEENFEEHS(0.051)MS(0.922)PEREMGNENIPS(0.017)T(0.008)VS(0.001)T(0.001)IS(0.001)R 62.713 0.00032692 5504800 545.38 588.28 387.82 344.71 781.06 600.98 474.07 525.65 683.71 543.76 TRUE FALSE FALSE 481.4513831 606.4042095 408.7867223 358.7687638 723.4427599 589.5173078 492.3550387 585.4878712 655.5271844 540.5256913 0.890709528 1.121878607 0.756276212 0.663740447 1.338405873 1.09063698 0.910881844 1.083182318 1.212758607 1 9.078219381 -5.757914504 24.99999953 0.927846094 1.090774202 0.165919424 0.178420186 116.1738651 823944.7549 0.022852668 0.044293798 1.75E-06 5.757914504 0.162928108 KQNS(ph)PVAPTAQPK ddPTM_HeLa_CUDC101_4h_R1 1 KQNSPVAPTAQPK 13 1 Q6P1N0;Q6P1N0-2 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 KQNS(0.809)PVAPT(0.191)AQPK 142.19 9.27E-06 0 4395.4 3694.8 3544.6 3516.3 3120.5 3413.9 2965.7 2554.4 3470.5 4170.2 TRUE FALSE FALSE 3880.177875 3808.632409 3736.231798 3659.709913 2890.306932 3348.785545 3080.088042 2845.182571 3327.444521 4145.395465 0.936021161 0.91876214 0.901296831 0.882837342 0.6972331 0.807832588 0.743014284 0.686347683 0.80268446 1 12.01729402 -5.7578528 0.415014836 0.990410363 0.649311636 0.512469157 0.070650547 0.457925908 0.118784618 0.01295842 0.065476953 1.75E-06 5.7578528 -0.341098728 SVGDDEELQQNESGT(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 SVGDDEELQQNESGTSPK 18 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 0 SVGDDEELQQNESGT(0.5)S(0.5)PK 262.37 6.31E-70 8509000 4919.8 4414 3915.4 4156.1 3781.9 3460.8 3344.6 3123.8 4502.2 4412 TRUE FALSE FALSE 4343.108502 4549.990108 4127.078367 4325.603722 3502.916772 3394.791006 3473.602342 3479.400765 4316.61741 4385.757228 0.99027563 1.03744687 0.941018427 0.986284351 0.798702844 0.774049002 0.792018838 0.793340941 0.984235375 1 12.09861024 -5.757729089 5.154856684 0.994175696 0.78679132 0.94987159 0.022554131 0.024903117 1.881605873 0.003165213 0.006155409 1.75E-06 5.757729089 -0.207384377 DLDFINLLSFDFHGS(ph)WEK ddPTM_HeLa_CUDC101_4h_R1 1 DLDFINLLSFDFHGSWEK 18 0 E9PII8;E9PPX4;H0YE91;E9PR52;Q15782-5;Q15782-6;Q15782 E9PII8 CHI3L2 Chitinase-3-like protein 2 1 0 DLDFINLLS(0.006)FDFHGS(0.994)WEK 56.708 0.032641 9199500 1224.4 1773.1 2128.9 1951.8 725.25 1521.6 950.99 963.75 1551.3 1763.8 TRUE FALSE FALSE 1080.877688 1827.727109 2243.994774 2031.40284 671.7497524 1492.578015 987.6700029 1073.459404 1487.354757 1753.308839 0.616478777 1.042444473 1.279862808 1.158610962 0.383132588 0.851292129 0.563317757 0.612247757 0.848313043 1 10.77586443 -5.757471954 24.99943605 0.892951661 0.617470092 0.405549402 0.210964279 124.4892694 784417.3085 0.037136156 0.072124227 1.75E-06 5.757471954 -0.27548157 VFS(ph)LSEADSHGGHWV ddPTM_HeLa_CUDC101_4h_R1 2 VFSLSEADSHGGHWV 15 0 H7BXG1 H7BXG1 CLEC16A 1 0 VFS(0.994)LS(0.006)EADSHGGHWV;VFS(0.998)LS(0.002)EADSHGGHWV ; 221.59 1.13E-32 9906400 5971.7 3978.2 3801.1 4026.1 6903.6 5904.1 6521.1 5004.3 5218.4 4307.1 TRUE FALSE FALSE 5271.706379 4100.763627 4006.598964 4190.30176 6394.335182 5791.489129 6772.621011 5573.969284 5003.295343 4281.481178 1.231280989 0.95779088 0.935797402 0.978703768 1.493486697 1.352683543 1.58184066 1.301878731 1.168589826 1 12.06389427 -5.757398354 24.99669246 1.076531708 1.437442414 0.729279413 0.114589914 49.71846685 307540.5616 0.019127976 0.037162361 1.75E-06 5.757398354 0.360910706 QLPSQK(ac)TVVVEAGKK ddPTM_HeLa_CUDC101_4h_R1 2 QLPSQKTVVVEAGKK 15 2 O94842-3;O94842-2;O94842 O94842-3 TOX4 TOX high mobility group box family member 4 0 1 ; QLPSQK(1)TVVVEAGKK;QLPSQK(1)TVVVEAGKK 149 0.0034173 2814200 1600.12 1623.22 1354.47 1602.7 2024.39 1958.15 1534.03 1137.1 1704.81 2532.61 FALSE TRUE FALSE 1412.556359 1673.229484 1427.696745 1668.065033 1875.054783 1920.801551 1593.198051 1266.542868 1634.53701 2517.545923 0.561084644 0.664627195 0.567098591 0.662575812 0.744794669 0.762965844 0.632837732 0.503086302 0.649258071 1 11.29780238 -9.333851564 0.960308397 1.008935845 0.639164192 0.023925564 0.13073653 0.240394254 0.381618747 0.063493276 0.015196863 4.64E-10 9.333851564 -0.369771653 QLQLAQEAAQK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 QLQLAQEAAQKR 12 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 1 ; QLQLAQEAAQK(1)R;QLQLAQEAAQK(1)R 201.46 9.55E-48 0 315.25 230.55 185.804 265.376 514.8 418.54 574.85 311.7 444.52 459.88 FALSE TRUE FALSE 278.2968729 237.6529722 195.8491263 276.1991803 476.8242296 410.5570468 597.0221571 347.1826681 426.1966975 457.1446133 0.608772071 0.51986388 0.428418318 0.604183386 1.043048995 0.89809009 1.305980952 0.759459169 0.932301694 1 8.83650681 -5.74676563 24.98260405 0.740907838 1.015986413 0.331236509 0.212357949 285.2733019 485685.5292 0.036048106 0.071849866 1.79E-06 5.74676563 0.275078575 VLSAPPHFHFGQT(ph)NRTPEFLR ddPTM_HeLa_CUDC101_4h_R1 2 VLSAPPHFHFGQTNRTPEFLR 21 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 1 0 VLSAPPHFHFGQT(0.5)NRT(0.5)PEFLR;VLSAPPHFHFGQT(0.5)NRT(0.5)PEFLR ; 58.427 0.012216 225200000 4468.2 3145.9 3225.2 2631.3 6064.1 4489.8 4121.3 3869.2 4328.7 4149.2 TRUE FALSE FALSE 3944.444369 3242.82145 3399.564068 2738.615787 5616.763424 4404.164546 4280.259922 4309.654088 4150.269154 4124.520374 0.956340135 0.786229951 0.82423258 0.663984061 1.361797958 1.06780041 1.037759432 1.044886119 1.006242854 1 12.01001065 -5.757394601 24.99997821 0.930165105 1.117306471 0.420101271 0.137091514 106.181528 656278.2767 0.021155334 0.041107038 1.75E-06 5.757394601 0.187141366 DISGPS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 DISGPSPSK 9 0 S4R3D6;Q96GX9-3;Q96GX9 S4R3D6 APIP Methylthioribulose-1-phosphate dehydratase 1 0 DIS(0.001)GPS(0.791)PS(0.207)K;DIS(0.008)GPS(0.897)PS(0.095)K ; 115.91 0.0072901 642830000 13240.1 8899.2 10593.8 10909.9 9450.6 8814.2 9009.7 6990.9 10409.4 11044.9 TRUE FALSE FALSE 11688.11555 9173.373804 11166.53287 11354.85288 8753.448066 8646.08382 9357.207147 7786.715798 9980.320126 10979.20444 1.064568531 0.835522633 1.017062113 1.03421454 0.797275259 0.787496386 0.852266409 0.709224046 0.909020337 1 13.4224859 -5.757328306 24.86806727 1.014067009 0.791324882 0.580628614 0.075220051 40.64072673 245833.866 0.010136649 0.019697673 1.75E-06 5.757328306 -0.222742126 VHPVS(ph)TMIK ddPTM_HeLa_CUDC101_4h_R1 2 VHPVSTMIK 9 0 P00338-3;P00338;P00338-4 P00338-3 LDHA L-lactate dehydrogenase A chain 1 0 VHPVS(0.724)T(0.276)MIK;VHPVS(0.888)T(0.112)MIK ; 81.525 0.026054 27307000 8812.2 8004.2 7769.9 7630.7 7058.9 7110.5 6794.9 6478 6743 6810.4 TRUE FALSE FALSE 7779.247274 8250.799915 8189.964297 7941.912929 6538.17901 6974.879059 7056.981569 7215.429335 6465.050686 6769.891438 1.149094833 1.218749221 1.209763018 1.173122642 0.965773096 1.030279307 1.042406903 1.065811675 0.954971102 1 12.72491698 -5.757282312 24.99995437 1.10244008 1.027535667 0.211115019 0.083646973 176.4913346 1061376.584 0.013640817 0.026511579 1.75E-06 5.757282312 -0.074904413 AVDITT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 AVDITTPK 8 0 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 AVDIT(0.079)T(0.921)PK 117.53 0.039275 823010000 18013 16075 15899 15838 16642 14752 12832 4521.8 15280 14807 TRUE FALSE FALSE 15901.54345 16570.2517 16758.54803 16483.9421 15414.35282 14470.63018 13326.93454 5036.543434 14650.15193 14718.92731 1.080346626 1.125778486 1.138571289 1.119914635 1.047247024 0.983130759 0.905428382 0.342181419 0.995327419 1 13.84538491 -4.168993075 1.8086405 1.057640218 8.73E-15 0.945704123 0.051747998 0.206530329 0.557767823 0.008527684 0.399317221 6.78E-05 4.168993075 -1.057640218 down PCSEETPAISPS(ph)KR ddPTM_HeLa_CUDC101_4h_R1 3 PCSEETPAISPSKR 14 1 P33316-2;H0YNJ9 P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 PCSEETPAIS(0.004)PS(0.996)KR;PCSEETPAIS(0.007)PS(0.993)KR;PCSEET(0.003)PAIS(0.228)PS(0.769)KR ;; 162.64 6.95E-05 8704759000 14253.6 14056.8 12823.7 13730.5 11945 11365.6 11805.9 13165.6 13890.3 12971.4 TRUE FALSE FALSE 12582.81462 14489.87335 13516.98801 14290.48914 11063.84115 11148.82012 12261.25752 14664.31869 13317.73595 12894.24554 0.975847294 1.12374728 1.048296155 1.108284242 0.858044863 0.86463532 0.950909263 1.137276209 1.032843365 1 13.65443974 -5.757198862 24.99996125 1.012047451 0.946295852 0.154551657 0.087115951 195.7248916 1153881.381 0.013139596 0.025542263 1.75E-06 5.757198862 -0.065751599 LQLEETMPS(ph)PYGR ddPTM_HeLa_CUDC101_4h_R1 2 LQLEETMPSPYGR 13 0 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 0 LQLEET(0.001)MPS(0.999)PYGR;LQLEETMPS(1)PYGR ; 153 0.00021518 31037000 2442.89 1846.7 1986.27 2111.25 2049.2 2231.15 1800.97 681.93 1946.68 2556.6 TRUE FALSE FALSE 2156.538137 1903.594638 2093.653764 2197.355901 1898.034599 2188.594531 1870.434016 759.5581547 1866.437026 2541.393229 0.848565311 0.74903585 0.823821257 0.864626487 0.746848058 0.86117902 0.735987644 0.298874706 0.734414889 1 11.31140391 -4.165972209 1.587949088 0.888850796 4.70E-30 0.729744792 0.090709433 0.490899758 0.963148781 0.014317552 0.720778046 6.82E-05 4.165972209 -0.888850796 down AEGEWEDQEALDYFS(ph)DK ddPTM_HeLa_CUDC101_4h_R1 1 AEGEWEDQEALDYFSDK 17 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEWEDQEALDY(0.019)FS(0.981)DK 91.518 0.0062453 4291800 2119.4 1966.8 1772.7 1823.5 1828.6 1640.3 1773.7 1424.3 2712.1 1867.9 TRUE FALSE FALSE 1870.967145 2027.394777 1868.537524 1897.870212 1693.707821 1609.01401 1842.112203 1586.436555 2600.30609 1856.789648 1.007635489 1.091881775 1.006326983 1.022124512 0.912170004 0.86655697 0.992095257 0.854397566 1.400431165 1 10.85859467 -5.757193674 24.52719438 1.012430156 0.909593657 0.210108644 0.129953064 44.69446491 258192.6198 0.00593821 0.01154362 1.75E-06 5.757193674 -0.102836499 DSNAPKS(ph)PLTGYVR ddPTM_HeLa_CUDC101_4h_R1 1 DSNAPKSPLTGYVR 14 1 H0YNS8;H0YKM5;Q9NP66 H0YNS8 HMG20A High mobility group protein 20A 1 0 DS(0.001)NAPKS(0.91)PLT(0.09)GYVR 127.2 0.0051361 30408000 1892.5 1548.3 1521.8 1497.8 1519 1394.5 1204.9 1341.4 1650.2 1550.6 TRUE FALSE FALSE 1670.664019 1596.001288 1604.073111 1558.886758 1406.946396 1367.902236 1251.373397 1494.099554 1582.178058 1541.376962 1.083877637 1.035438654 1.040675416 1.01135984 0.912785406 0.887454704 0.811854223 0.969327809 1.02647055 1 10.59000402 -5.75717254 2.47672367 1.040260825 0.882520789 0.739079479 0.04038734 0.111376066 1.395001336 0.006651279 0.014039063 1.75E-06 5.75717254 -0.157740036 DFQESS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 1 DFQESSPQK 9 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 DFQES(0.185)S(0.815)PQK 132.17 0.0029133 9830500 8014.1 6013 6729.5 6869.5 5357.4 5005.4 4646.6 4457.8 7002.2 6976.1 TRUE FALSE FALSE 7074.699347 6198.253403 7093.317126 7149.667903 4962.195275 4909.930335 4825.820919 4965.257933 6713.566352 6934.605847 1.020202085 0.893814809 1.022886849 1.031012874 0.715569909 0.70803308 0.69590414 0.716011557 0.968125154 1 12.75959817 -5.757158889 24.99685896 1.002572565 0.707892311 0.926820024 0.038499902 18.24321714 106533.8144 0.005437656 0.010577111 1.75E-06 5.757158889 -0.294680253 SLNSENSYVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SLNSENSYVSPR 12 0 F5H6W4;Q9H992;Q9H992-2 F5H6W4 7-Mar E3 ubiquitin-protein ligase MARCH7 1 0 SLNSENS(0.002)YVS(0.998)PR 84.734 0.028374 4892100 1200.2 1171 1072.8 908.15 873.72 802.8 713.45 765.38 891.1 791.34 TRUE FALSE FALSE 1059.514375 1207.077122 1130.798813 945.1882824 809.2674163 787.4879276 740.9680055 852.5077654 854.3684808 786.6330745 1.346897823 1.534485596 1.437517503 1.201561837 1.028773697 1.001086724 0.941948705 1.08374259 1.086108007 1 9.619547036 -5.757092018 4.675724821 1.2243312 1.005107517 0.378517286 0.153761617 0.237661101 13.12639782 0.029542731 0.057802924 1.75E-06 5.757092018 -0.219223682 SQAPLESS(ph)LDSLGDVFLDSGRK ddPTM_HeLa_CUDC101_4h_R1 1 SQAPLESSLDSLGDVFLDSGRK 22 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 SQAPLES(0.214)S(0.785)LDSLGDVFLDSGRK 139.22 2.37E-07 6541400 3028.9 2866.7 2768.3 2850.4 3599.1 3429.1 3351.4 2586.3 4073 3471.8 TRUE FALSE FALSE 2673.856934 2955.019629 2917.962672 2966.651632 3333.601563 3363.695631 3480.664621 2880.713938 3905.109216 3451.149579 0.774772832 0.856242119 0.84550455 0.859612591 0.965939461 0.974659473 1.008552235 0.834711412 1.131538673 1 11.75286129 -5.757036548 24.8502926 0.881911154 0.952485683 0 0.103877805 183.0772942 1033302.675 0.013697653 0.026649189 1.75E-06 5.757036548 0.070574529 QLSESFK(ac)SK ddPTM_HeLa_CUDC101_4h_R1 1 QLSESFKSK 9 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 0 1 QLSESFK(1)SK 92.051 0.023161 713160 281.05 144.75 155.24 168.06 171.83 205.69 212.94 281.77 131.22 132.31 FALSE TRUE FALSE 248.105745 149.2095759 163.632744 174.9142132 159.1544432 201.766806 221.1531671 313.8455578 125.8110561 131.5230142 1.886405558 1.134475033 1.244137727 1.329913356 1.210088167 1.53407985 1.681478853 2.386240611 0.956570656 1 7.039171458 -4.174625492 1.534429275 1.374970646 2.927450299 0.611044373 0.26354235 0.95834807 1.761312937 0.04849993 2.375640723 6.69E-05 4.174625492 1.552479653 TPHPVLT(ph)PVAANQAK ddPTM_HeLa_CUDC101_4h_R1 2 TPHPVLTPVAANQAK 15 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3;A0A0A0MSW3;A0A494C104;H0Y837 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 T(0.006)PHPVLT(0.994)PVAANQAK;TPHPVLT(1)PVAANQAK ; 125.96 0.0011049 45669000 11110.4 9546.2 9856 9851.4 10869 9161.1 8397.5 3038.7 11198.2 10764.6 TRUE FALSE FALSE 9808.055754 9840.307107 10388.84517 10253.18267 10067.21552 8986.367281 8721.394388 3384.613325 10736.60546 10700.57168 0.916591753 0.919605737 0.970868238 0.958190177 0.940810998 0.83980254 0.815040042 0.316302103 1.003367463 1 13.38540025 -4.162010389 1.567687952 0.953093992 8.09E-17 0.953661955 0.041560798 0.211201019 0.398955147 0.006400341 0.330016382 6.89E-05 4.162010389 -0.953093992 down AEQGS(ph)EEEGEGEEEEEEGGESKADDPYAHLSK ddPTM_HeLa_CUDC101_4h_R1 1 AEQGSEEEGEGEEEEEEGGESKADDPYAHLSK 32 1 Q8NE71;Q5STZ8 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 AEQGS(0.995)EEEGEGEEEEEEGGES(0.005)KADDPYAHLSK 84.369 4.19E-08 37922000 2596.4 1183.5 1190.6 1061.6 3846.6 2511.1 2646.6 2275.4 2029.3 2136.5 TRUE FALSE FALSE 2292.053928 1219.962232 1254.967437 1104.896637 3562.843982 2463.204951 2748.680249 2534.422339 1945.651395 2123.792003 1.07922712 0.574426418 0.590908825 0.520247103 1.677586118 1.15981459 1.294232319 1.193347717 0.916121443 1 11.05242677 -5.757035299 24.99986937 0.930170224 1.316356281 0.493907869 0.246494214 106.8079632 606290.0322 0.04060624 0.0790227 1.75E-06 5.757035299 0.386186056 S(ph)SSVGSSSSYPISPAVSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 S(0.956)S(0.012)S(0.032)VGS(0.001)SSSYPISPAVSR 207.05 6.81E-24 6190200000 3060.9 2886.8 2740.1 2642.9 4134 3881.4 3072.5 3521.7 3130.6 3379.6 TRUE FALSE FALSE 2702.105942 2975.738886 2888.238094 2750.688886 3829.043056 3807.368762 3191.007354 3922.596093 3001.555343 3359.497989 0.804318369 0.885768914 0.859723121 0.818779739 1.139766438 1.133314791 0.949846484 1.167613764 0.893453532 1 11.71402995 -5.756942977 24.99920932 0.894084123 1.089627569 0.671221885 0.074993442 71.63072903 398248.9956 0.013537319 0.02635755 1.75E-06 5.756942977 0.195543446 KYESDEDS(ph)LGSSGR ddPTM_HeLa_CUDC101_4h_R1 2 KYESDEDSLGSSGR 14 1 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase 1 0 KYES(0.003)DEDS(0.996)LGS(0.001)SGR;KY(0.004)ES(0.023)DEDS(0.972)LGS(0.002)SGR ; 201.3 1.96E-16 82000000 5666.7 5346 5180.1 5091.4 5312.5 5384.9 4243.5 2041.46 6290.1 5623 TRUE FALSE FALSE 5002.458016 5510.703923 5460.151875 5299.049299 4920.607459 5282.192004 4407.173216 2273.851555 6030.819416 5589.554146 0.894965481 0.985893289 0.976849268 0.948027188 0.880321995 0.945011331 0.788465967 0.406803744 1.078944627 1 12.44851749 -4.159578031 1.630750539 0.95037899 0.104043385 0.907156247 0.054065213 0.233144548 0.481312998 0.006506523 0.334631001 6.93E-05 4.159578031 -0.846335605 down QSFTMVADT(ph)PENLR ddPTM_HeLa_CUDC101_4h_R1 5 QSFTMVADTPENLR 14 0 C9J9W2;Q14847;Q14847-2;F6S2S5 C9J9W2 LASP1 LIM and SH3 domain protein 1 1 0 QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFT(0.048)MVADT(0.952)PENLR;QSFT(0.001)MVADT(0.999)PENLR ;;;; 212.59 3.34E-23 263253800 11221.7 9688.2 8910.34 9512.8 9931.6 9102.2 7790.3 3114.52 10593.5 10236.3 TRUE FALSE FALSE 9906.309337 9986.681959 9392.059933 9900.773102 9198.965655 8928.5907 8090.774481 3469.064367 10156.83145 10175.41403 0.97355344 0.981452148 0.923015015 0.973009361 0.904038462 0.877467066 0.795129756 0.340926114 0.998173776 1 13.31279988 -4.158642591 1.321783301 0.97539614 1.76E-14 0.964694118 0.03546201 0.21486939 0.271209161 0.005433862 0.298943114 6.94E-05 4.158642591 -0.97539614 down S(ph)SPPLPPPAEER ddPTM_HeLa_CUDC101_4h_R1 4 SSPPLPPPAEER 12 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 S(0.979)S(0.021)PPLPPPAEER;S(0.908)S(0.092)PPLPPPAEER;S(0.984)S(0.016)PPLPPPAEER;S(0.996)S(0.004)PPLPPPAEER ;;; 158.34 0.00015172 260888000 7212.63 6863.36 6938.24 6966 6520.2 6287.82 5894.92 6713.9 7777.9 7078.9 TRUE FALSE FALSE 6367.176445 7074.811987 7313.342241 7250.10359 6039.217836 6167.89031 6122.289039 7478.183237 7457.29167 7036.794388 0.904840485 1.005402687 1.039300261 1.030313405 0.858234233 0.876519899 0.870039495 1.062725842 1.059756937 1 12.78070264 -5.756745326 24.99986856 0.969935014 0.910651284 0.176973177 0.071841996 190.2134011 1013036.208 0.010449035 0.020362944 1.75E-06 5.756745326 -0.059283731 VLTLSERPLDFLDLERPPTT(ph)PQNEEIR ddPTM_HeLa_CUDC101_4h_R1 1 VLTLSERPLDFLDLERPPTTPQNEEIR 27 2 Q9GZY8-5;C9JHF5;A0A0A0MS29;Q9GZY8-4;Q9GZY8-3;Q9GZY8-2;Q9GZY8 Q9GZY8-5 MFF Mitochondrial fission factor 1 0 VLTLS(0.001)ERPLDFLDLERPPT(0.425)T(0.574)PQNEEIR 48.852 0.030119 38344000 707.18 744.66 556.69 603.47 822.3 828.66 725.83 601.23 722.77 669.2 TRUE FALSE FALSE 624.2854324 767.602092 586.7863453 628.082115 761.6405673 812.8546911 753.8255062 669.6715929 692.9771147 665.2195686 0.938465225 1.153907865 0.882094233 0.944172638 1.144946125 1.221934425 1.133198032 1.006692564 1.041726893 1 9.377686799 -5.756717482 24.99913963 0.976435422 1.13396045 0.361962627 0.084708578 80.76422405 427585.296 0.011770922 0.022941739 1.75E-06 5.756717482 0.157525028 SMS(ph)ENAVR ddPTM_HeLa_CUDC101_4h_R1 5 SMSENAVR 8 0 Q9GZY8-5;C9JHF5;A0A0A0MS29;Q9GZY8-4;Q9GZY8-3;Q9GZY8-2;Q9GZY8;H7C433 Q9GZY8-5 MFF Mitochondrial fission factor 1 0 S(0.064)MS(0.936)ENAVR;S(0.391)MS(0.609)ENAVR;S(0.146)MS(0.854)ENAVR;S(0.035)MS(0.965)ENAVR;SMS(1)ENAVR ;;;; 123.01 0.0031874 1174305000 21813.4 19898.7 14242.9 17028.5 16483.4 16343.4 14790.1 13574.2 12724.7 15179.7 TRUE FALSE FALSE 19256.46632 20511.75536 15012.91426 17722.99583 15267.45242 16031.67687 15360.55911 15119.43206 12200.18248 15089.41047 1.276157631 1.359347696 0.99493047 1.174532025 1.011799132 1.062445541 1.017969466 1.00198958 0.808526119 1 13.88124882 -5.756568627 24.94668998 1.143990545 1.025930422 0.019342303 0.149143483 177.855947 910919.4508 0.019399099 0.037822191 1.75E-06 5.756568627 -0.118060123 AEWEEVT(ph)NT(ph)AVEKRYGIWK ddPTM_HeLa_CUDC101_4h_R1 1 AEWEEVTNTAVEKRYGIWK 19 2 A0A0A0MTS7;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12;A0A0A0MRA3;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9 A0A0A0MTS7 TTN Titin 2 0 AEWEEVT(1)NT(1)AVEKRYGIWK 58.671 0.028247 23582000 4726.2 5633.6 5863.7 5805.7 3183.2 3718.5 3677.2 3428.1 4457 5674.6 TRUE FALSE FALSE 4172.202 5807.164539 6180.709359 6042.48154 2948.381678 3647.575808 3819.030836 3818.341047 4273.280574 5640.847227 0.739641021 1.029484456 1.095705859 1.071201062 0.522684193 0.646636163 0.677031425 0.67690914 0.757560062 1 12.46169615 -5.756302817 24.99997864 0.917247977 0.635246446 0.614847164 0.121786727 86.59027551 421435.5101 0.020974082 0.040949348 1.75E-06 5.756302817 -0.28200153 SHNVAAGSYEAPLPPGS(ph)FHGDFAYGTYR ddPTM_HeLa_CUDC101_4h_R1 2 SHNVAAGSYEAPLPPGSFHGDFAYGTYR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 SHNVAAGSYEAPLPPGS(0.994)FHGDFAY(0.001)GT(0.003)Y(0.001)R;SHNVAAGSY(0.016)EAPLPPGS(0.919)FHGDFAY(0.016)GT(0.026)Y(0.022)R ; 94.403 9.84E-09 40176000 2066 1668.25 2026.44 1787.22 2379 2350.9 2286.3 1587.57 1914.99 2016.96 TRUE FALSE FALSE 1823.826612 1719.646805 2135.995476 1860.110557 2203.50591 2306.060499 2374.483357 1768.292552 1836.053302 2004.963032 0.90965598 0.857695019 1.065354045 0.927753044 1.099025705 1.150176069 1.184302812 0.881957684 0.915754192 1 10.96935992 -5.756296707 24.84334629 0.955192977 1.091490435 0.328966731 0.091678718 101.860728 492064.6822 0.012896656 0.025176448 1.75E-06 5.756296707 0.136297458 QLVHELDEAEYR ddPTM_HeLa_CUDC101_4h_R1 4 QLVHELDEAEYR 12 0 H0YKK6;Q06323-3;Q06323;Q06323-2 H0YKK6 PSME1 Proteasome activator complex subunit 1 0 0 ;;; ;;; 193 3.78E-12 28095400 7222.8 7255.1 7455.3 6826.8 8259.8 7170.5 6741.4 6613.8 7850.8 9598.6 FALSE FALSE TRUE 6376.154333 7478.621032 7858.356069 7105.226412 7650.49101 7033.734659 7001.418056 7366.688258 7527.186701 9541.5071 0.668254424 0.783798718 0.823596942 0.744665003 0.801811593 0.737172292 0.733785343 0.772067576 0.788888655 1 13.22000145 -9.43128427 1.103990233 1.00312432 0.752410908 0.168649426 0.075378925 0.176864648 0.37782826 0.03485975 0.00831238 3.70E-10 9.43128427 -0.250713412 ASTVS(ph)PGGYMVPK ddPTM_HeLa_CUDC101_4h_R1 2 ASTVSPGGYMVPK 13 0 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 1 0 AST(0.038)VS(0.962)PGGYMVPK;AS(0.001)T(0.025)VS(0.974)PGGYMVPK ; 184.96 5.77E-11 55380000 4750.7 4469.9 4554.7 4392.5 3779.7 3956.4 3876.8 2720 4562.3 4253.8 TRUE FALSE FALSE 4193.830148 4607.612321 4800.940859 4571.645136 3500.879061 3880.938262 4026.329475 3029.633805 4374.240063 4228.498208 0.99180133 1.089656917 1.135377295 1.081151016 0.827924925 0.917805346 0.952188999 0.71647986 1.034466576 1 12.04592965 -5.756240651 24.99857501 1.02075029 0.865227965 0.612916551 0.075390069 87.32364555 419899.1252 0.011556624 0.022568943 1.75E-06 5.756240651 -0.155522325 QLVSKPLSSSVSNNK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 QLVSKPLSSSVSNNKR 16 2 J3QR07;Q96MU7-2;Q96MU7;J3KS01 J3QR07 YTHDC1 YTH domain-containing protein 1 0 1 QLVSKPLSSSVSNNK(1)R 128.85 0.0097512 1653600 318.24 254.34 0 282.85 453.6 199.73 356.93 275.21 210.58 197.97 FALSE TRUE FALSE 280.9363896 262.1759139 0 294.3858456 420.1388317 195.920483 370.6969097 306.538794 201.8998033 196.7924656 1.427576959 1.332245689 0 1.495920307 2.134933522 0.995569024 1.883694625 1.557675458 1.025952912 1 7.620531177 -6.016802809 24.94529897 1.12002802 1.639108542 0.309692617 0.463009884 823.9191376 1223183.834 0.069232448 0.116758031 9.62E-07 6.016802809 0.519080522 KEKPELSEPSHLNGPSS(ph)DPEAAFLSR ddPTM_HeLa_CUDC101_4h_R1 2 KEKPELSEPSHLNGPSSDPEAAFLSR 26 2 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 KEKPELSEPSHLNGPS(0.128)S(0.868)DPEAAFLS(0.004)R;KEKPELSEPSHLNGPS(0.114)S(0.886)DPEAAFLSR ; 137.36 2.51E-11 218480000 5167.5 3451.9 3751.7 3162.2 6735.8 5285.9 4846.7 5277.6 5422.2 4235 TRUE FALSE FALSE 4561.773483 3558.248947 3954.52825 3291.168184 6238.913454 5185.080264 5033.638843 5878.380651 5198.694621 4209.810032 1.083605543 0.845227913 0.939360261 0.781785439 1.481994058 1.231666091 1.195692633 1.396352949 1.234900051 1 12.03953942 -5.756220406 24.99999493 0.999762683 1.310319693 0.594247958 0.139126782 68.49158764 328085.5691 0.018038808 0.035233599 1.75E-06 5.756220406 0.31055701 QMEQISQFLQAAER ddPTM_HeLa_CUDC101_4h_R1 3 QMEQISQFLQAAER 14 0 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 0 0 ;; ;; 246.63 3.69E-55 111870800 2851.19 1964.51 2133.65 1970.48 2264.11 2258.34 2196.19 2146.94 2374.03 2743.33 FALSE FALSE TRUE 2516.97783 2025.034225 2249.001573 2050.844692 2097.091116 2215.265927 2280.897784 2391.338971 2276.171479 2727.012551 0.922979921 0.74258339 0.824712586 0.752048131 0.769006771 0.812341669 0.836408979 0.876907945 0.834675835 1 11.41310562 -7.479827581 2.968788668 0.969428272 0.801534661 0.386617443 0.059167244 0.092526042 1.590584272 0.008321617 0.009159052 3.31E-08 7.479827581 -0.167893612 QMFLTQTDTGDDR ddPTM_HeLa_CUDC101_4h_R1 1 QMFLTQTDTGDDR 13 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 0 0 121.08 0.00060687 0 531.83 497.34 419.15 490.91 348.52 555.41 511.31 392.9 740.36 558.2 FALSE FALSE TRUE 469.4896936 512.6624559 441.8105169 510.9314317 322.8103739 544.8164796 531.031398 437.6261478 709.8420474 554.8798016 0.846110621 0.923916233 0.796227427 0.920796595 0.581766309 0.981863961 0.957020595 0.78868639 1.279271737 1 9.116031478 -9.272621361 0.587117069 1.024485515 0.8472794 0.32301229 0.14049491 1.5016042 0.737732919 0.145398294 0.024378587 5.34E-10 9.272621361 -0.177206116 (ac)SETAPAETATPAPVEKS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 2 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 1 0 S(0.251)ET(0.018)APAETATPAPVEKS(0.73)PAK;S(0.004)ET(0.001)APAET(0.001)AT(0.004)PAPVEKS(0.991)PAK ; 87.228 1.82E-05 14096000 2786.97 5894.2 2944.86 3563.4 2202.68 2089.82 1900.58 2581.66 2469.11 3685.4 TRUE FALSE FALSE 2460.285601 6075.793316 3104.068039 3708.730854 2040.192685 2049.960165 1973.886007 2875.545739 2367.332241 3663.479077 0.671570807 1.658476325 0.847300605 1.012352132 0.556900324 0.5595665 0.53880095 0.784922113 0.646197833 1 11.83899866 -5.756137518 24.96083455 0.919759142 0.601352601 0.286381383 0.272714367 148.3453838 698392.9705 0.040278215 0.078690305 1.75E-06 5.756137518 -0.318406541 QSSTPGSLFLS(ph)PPAPAPK ddPTM_HeLa_CUDC101_4h_R1 1 QSSTPGSLFLSPPAPAPK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 QSSTPGS(0.003)LFLS(0.997)PPAPAPK 120.9 8.98E-05 11019000 2652.1 2378.9 2595.6 2158.7 2281.3 2141.2 1775 798.69 3176.3 2837.9 TRUE FALSE FALSE 2341.224858 2452.191089 2735.925987 2246.741117 2113.013044 2100.360177 1843.462345 889.6096412 3045.37157 2821.020045 0.829921384 0.869256882 0.969835713 0.796428626 0.74902447 0.74453926 0.653473678 0.315350344 1.079528511 1 11.4620012 -4.157508392 0.592718806 0.920030306 1.42E-30 0.831900283 0.083494007 1.150726292 0.251727179 0.01475935 0.741987875 6.96E-05 4.157508392 -0.920030306 down S(ph)PPPPGGGNLGMNSR ddPTM_HeLa_CUDC101_4h_R1 1 SPPPPGGGNLGMNSR 15 0 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 S(1)PPPPGGGNLGMNSR 89.506 0.0026773 0 250.14 201.75 163.92 133.07 320.08 247.29 193.67 221.13 154.6 192.02 TRUE FALSE FALSE 220.8189684 207.9656784 172.782011 138.4971698 296.4683361 242.5733553 201.1399168 246.3025454 148.2273226 190.8778565 1.156860059 1.089522285 0.905196727 0.725580077 1.553183494 1.270830256 1.053762445 1.290367305 0.776555884 1 7.576505937 -5.756015576 24.99997166 1.041231199 1.27350157 0.412583895 0.182317104 130.6505783 602201.5604 0.024926917 0.048727999 1.75E-06 5.756015576 0.232270371 QMREEAERTRDELER ddPTM_HeLa_CUDC101_4h_R1 2 QMREEAERTRDELER 15 3 A0A5K1VW66;P35240-4;P35240-6;P35240-5;P35240-3;P35240;P35240-2 A0A5K1VW66 NF2 Merlin 0 0 ; ; 107.97 0.0058226 761667000 8318.7 6749.4 6971.1 7019.4 8178 6916.6 7326.8 6845.8 7107.9 6741.5 FALSE FALSE TRUE 7343.594596 6957.341014 7347.978752 7305.681472 7574.725233 6784.677379 7609.39713 7625.0982 6814.909354 6701.401258 1.09582971 1.038191976 1.096483925 1.090172218 1.130319606 1.012426673 1.135493434 1.137836388 1.016937964 1 12.71024708 -13.52287874 0.192835533 0.575892726 1.111720968 0.469850131 0.037168662 32.96076049 0.392825525 5.2519727 0.041081033 3.00E-14 13.52287874 0.535828243 SSS(ph)MSSIDLVSASDDVHR ddPTM_HeLa_CUDC101_4h_R1 1 SSSMSSIDLVSASDDVHR 18 0 A0A2U3TZL3;Q9Y5P4;Q9Y5P4-3;A0A0A0MRE4;A0A2R8YFA1 A0A2U3TZL3 COL4A3BP Collagen type IV alpha-3-binding protein 1 0 S(0.092)S(0.092)S(0.759)MS(0.033)S(0.023)IDLVSASDDVHR 181.64 3.26E-11 10835000 1638.6 1155.2 983.62 1041.7 2271.4 1953.7 1665.4 1592 1353.6 1516 TRUE FALSE FALSE 1446.525792 1190.790343 1036.797472 1084.185029 2103.843347 1916.436428 1729.635036 1773.226845 1297.804035 1506.982765 0.959882107 0.790181793 0.687995574 0.719440895 1.396063311 1.271704277 1.147747059 1.176673607 0.861193682 1 10.5574472 -5.755829738 24.99964168 0.923935626 1.242572573 0.687175031 0.128114498 85.73929493 382097.166 0.021786077 0.042615815 1.75E-06 5.755829738 0.318636948 QMVEILHK ddPTM_HeLa_CUDC101_4h_R1 1 QMVEILHK 8 0 O76003 O76003 GLRX3 Glutaredoxin-3 0 0 99.442 0.00096942 0 5884.3 4916.6 5063.1 4933.5 4807.5 4913.1 4052.6 4481.5 4228.7 4073.5 FALSE FALSE TRUE 5194.551274 5068.074618 5336.826501 5134.709454 4452.860303 4819.390803 4208.91014 4991.655845 4054.391196 4049.270641 1.282836277 1.251601848 1.31797229 1.268057858 1.099669718 1.190187377 1.03942426 1.232729617 1.001264562 1 11.98344636 -9.404211568 1.136552322 1.000291902 1.213267756 0.51849692 0.080500714 0.356808728 0.826093585 0.059567867 0.015226545 3.94E-10 9.404211568 0.212975854 QMVETELK ddPTM_HeLa_CUDC101_4h_R1 1 QMVETELK 8 0 P62258;P62258-2;K7EIT4 P62258 YWHAE 14-3-3 protein epsilon 0 0 126.24 0.030613 15657000 1673.6 1381.1 1660.2 1342.3 1876.2 1699 1147.3 1449.5 1630.3 1517 FALSE FALSE TRUE 1477.423145 1423.650054 1749.955434 1397.044796 1737.796464 1666.594406 1191.551745 1614.505221 1563.098344 1507.976817 0.979738633 0.944079536 1.160465741 0.926436521 1.15240264 1.105185695 0.790165825 1.070643264 1.036553299 1 10.55839853 -4.784338112 24.99999536 1.012221236 0.930404144 0.113197711 0.101686947 347.8799792 379803.0603 0.013129702 0.039426257 1.64E-05 4.784338112 -0.081817092 QMWTSNLSK ddPTM_HeLa_CUDC101_4h_R1 1 QMWTSNLSK 9 0 Q8NEL0 Q8NEL0 CCDC54 Coiled-coil domain-containing protein 54 0 0 133.6 0.015074 91718000 1375.7 1258 849.18 935.45 1057.8 1098 1050 1139.5 1140.9 839.32 FALSE FALSE TRUE 1214.442531 1296.757489 895.0892394 973.6016944 979.7682014 1077.057479 1090.498852 1269.216074 1093.871619 834.3276873 1.455594187 1.554254412 1.072826964 1.166929624 1.174320613 1.290928607 1.307039031 1.521244103 1.311081528 1 9.704470312 -9.472351476 1.234243725 1.001448554 1.321766236 0.010148332 0.175467172 0.4066252 1.116119567 0.108599748 0.027211153 3.37E-10 9.472351476 0.320317682 TLTEPS(ph)VDFNHSDDFTPISTVQK ddPTM_HeLa_CUDC101_4h_R1 1 TLTEPSVDFNHSDDFTPISTVQK 23 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 T(0.028)LT(0.134)EPS(0.838)VDFNHSDDFTPISTVQK 125.79 1.38E-07 76995000 4020.9 2603.5 2931.2 2963.4 3780.8 3798.4 3419.9 2588.7 2675.9 2990.9 TRUE FALSE FALSE 3549.576197 2683.710749 3089.669538 3084.260261 3501.897916 3725.951849 3551.806689 2883.387144 2565.598269 2973.109994 1.193893332 0.902661104 1.039204585 1.037385185 1.177856831 1.253216953 1.194643554 0.969821887 0.862934192 1 11.53775712 -5.755724818 24.9854687 1.070202047 1.159605595 0.145666023 0.118168228 230.5998426 1008228.139 0.016357769 0.032025245 1.75E-06 5.755724818 0.089403548 LQLS(ph)PWESSVVNR ddPTM_HeLa_CUDC101_4h_R1 2 LQLSPWESSVVNR 13 0 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 LQLS(0.992)PWES(0.007)SVVNR;LQLS(0.774)PWES(0.226)SVVNR ; 238.64 1.57E-43 35309000 5752 4492.7 4580.2 4865.2 5065.4 4872.3 4477 1439.74 5011.4 5479.7 TRUE FALSE FALSE 5077.759279 4631.114762 4827.819466 5063.623885 4691.735534 4779.368995 4649.67939 1603.634182 4804.827971 5447.106501 0.932193868 0.850197212 0.886308991 0.92959884 0.861326198 0.877414274 0.853605375 0.294401107 0.882088127 1 12.41127436 -4.157439144 2.142073357 0.938842772 3.60E-12 0.918961462 0.052933617 0.209961536 0.838453066 0.008919894 0.414818606 6.96E-05 4.157439144 -0.938842772 down S(ph)PVIGSEVFLPNSNHVASGAGEAEER ddPTM_HeLa_CUDC101_4h_R1 1 SPVIGSEVFLPNSNHVASGAGEAEER 26 0 P29590;P29590-5;P29590-9;P29590-3;P29590-8;H3BVD2;P29590-11;P29590-12;P29590-13;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 1 0 S(0.952)PVIGS(0.048)EVFLPNSNHVASGAGEAEER 94.045 3.79E-06 11274000 412.61 393.6 257.83 333.95 538.23 508.71 492.65 461.54 300.54 374.01 TRUE FALSE FALSE 364.2444813 405.7263495 271.7690697 347.5699245 498.5258452 499.0072043 511.6516755 514.079848 288.151614 371.7853719 0.979717086 1.091291859 0.730983762 0.934867132 1.34089688 1.342191603 1.37620174 1.382732853 0.775048283 1 8.538326197 -5.755708873 22.92614848 0.973512719 1.360319058 0.795552916 0.107598501 15.00208963 60016.98713 0.012849811 0.025099723 1.76E-06 5.755708873 0.386806339 DLGSTEDGDGT(ph)DDFLT(ph)DKEDEK ddPTM_HeLa_CUDC101_4h_R1 1 DLGSTEDGDGTDDFLTDKEDEK 22 1 Q15527 Q15527 SURF2 Surfeit locus protein 2 2 0 DLGS(0.13)T(0.13)EDGDGT(0.74)DDFLT(1)DKEDEK 56.332 0.0021239 0 3309.2 3833.1 3481.4 3807.9 5206.1 5088.4 5392.8 3261.7 4446.5 5308 TRUE FALSE FALSE 2921.300592 3951.193268 3669.615015 3963.202621 4822.056375 4991.347248 5600.802102 3632.998744 4263.213388 5276.42778 0.553651204 0.74883869 0.695473371 0.751114729 0.913886549 0.945970921 1.061476123 0.688533776 0.807973418 1 12.36534582 -5.755514149 22.93174226 0.770756539 0.916932189 0.20724462 0.134728413 85.60265825 331286.4956 0.026852292 0.052493237 1.76E-06 5.755514149 0.146175651 S(ph)HLRKNPPT(ph)YS(ph)S(ph)STSMAAVIGNPK ddPTM_HeLa_CUDC101_4h_R1 1 SHLRKNPPTYSSSTSMAAVIGNPK 24 2 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 4 0 S(0.988)HLRKNPPT(0.932)Y(0.479)S(0.46)S(0.46)S(0.212)T(0.212)S(0.258)MAAVIGNPK 40.369 0.0033129 0 744.76 564.47 562.35 481.85 861.77 908.79 605.65 474.65 729.84 573.09 TRUE FALSE FALSE 657.4603618 581.8606516 592.752342 501.5019257 798.198944 891.4563449 629.0101234 528.6822374 699.7556863 569.6812352 1.154084637 1.021379353 1.040498274 0.880320247 1.401132589 1.564833612 1.10414401 0.928031686 1.228328481 1 9.154011076 -5.755367416 24.99996689 1.055458223 1.261671641 0.220339481 0.179508397 169.1333163 696362.2702 0.026103414 0.05115967 1.76E-06 5.755367416 0.206213417 QNLYDLDEDDDGIASVPTK ddPTM_HeLa_CUDC101_4h_R1 1 QNLYDLDEDDDGIASVPTK 19 0 F6VRR5;Q9BY77;F8WCX5 F6VRR5 POLDIP3 Polymerase delta-interacting protein 3 0 0 164.15 4.88E-05 17206000 5709.2 4937.3 5120 4209.8 5481.1 5139.6 5069.1 4767 5079.7 5150.5 FALSE FALSE TRUE 5039.976231 5089.412361 5396.802687 4381.49384 5076.770173 5041.570693 5264.616885 5309.656011 4870.312616 5119.864597 0.984396391 0.99405214 1.054090901 0.855783148 0.991582898 0.984707818 1.028272679 1.037069616 0.95125809 1 12.32188994 -4.720995506 4.876917741 0.986653813 1.034484514 0.154174149 0.04818158 0.282210255 15.08832795 0.00617923 0.023723523 1.90E-05 4.720995506 0.047830702 RAFLS(ph)ADER ddPTM_HeLa_CUDC101_4h_R1 1 RAFLSADER 9 1 H7C347;Q8N819-2;Q8N819 H7C347 PPM1N Probable protein phosphatase 1N 1 0 RAFLS(1)ADER 70.816 0.034506 420370 0 63.063 144.53 116.45 0 0 66.958 53.189 68.547 138.9 TRUE FALSE FALSE 0 65.00589628 152.343729 121.1993343 0 0 69.54059249 59.24382076 65.72146365 138.0738166 0 0.470805384 1.10334988 0.877786515 0 0 0.503647934 0.429073536 0.475987883 1 7.109295952 -5.755346485 24.99952911 0.581874596 0.235843783 0.261054259 0.334179202 256.3272547 1051716.062 0.066146369 0.129628362 1.76E-06 5.755346485 -0.346030813 QNPLPSSFPGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 QNPLPSSFPGKK 12 1 Q8IUR6-2;Q8IUR6;Q8IUR6-3 Q8IUR6-2 CREBRF CREB3 regulatory factor 0 1 ; QNPLPSSFPGK(1)K;QNPLPSSFPGK(1)K 163.9 2.60E-06 2088100 951.87 1096 1273.33 1637.11 1433.86 1295.87 1151.79 757.48 469.62 508.38 FALSE TRUE FALSE 840.2932415 1129.766461 1342.170071 1703.878422 1328.087004 1271.153439 1196.214926 843.7084614 450.2620648 505.3561332 1.662774401 2.235584743 2.655889547 3.37163895 2.628021938 2.515361654 2.367073134 1.669532447 0.890979718 1 8.981156628 -7.493334817 1.212175065 1.201102557 2.565926158 0.684387227 0.417217628 0.187226824 0.549283944 0.095176368 0.101757837 3.21E-08 7.493334817 1.364823601 VPMPS(ph)LIAENNCR ddPTM_HeLa_CUDC101_4h_R1 1 VPMPSLIAENNCR 13 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 VPMPS(1)LIAENNCR 108.9 0.004942 15649000 974.81 716.11 914.55 930.49 802.83 734.25 765.44 943.87 783.26 909.68 TRUE FALSE FALSE 860.5442495 738.1725003 963.9933394 968.4394041 743.6068304 720.2454046 794.9632772 1051.316346 750.9736913 904.2691829 0.951646109 0.816319426 1.066046878 1.070963627 0.822329064 0.796494471 0.879122381 1.162614369 0.83047582 1 9.820608488 -5.755280219 24.99303196 0.976499709 0.904092721 0.006304484 0.122805725 303.1096949 1229964.712 0.016344314 0.032040904 1.76E-06 5.755280219 -0.072406988 ISS(ph)KSPGHMVILDQTK ddPTM_HeLa_CUDC101_4h_R1 1 ISSKSPGHMVILDQTK 16 1 Q9NWH9;Q9NWH9-3 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 IS(0.217)S(0.779)KS(0.003)PGHMVILDQTK 89.659 0.0051091 93166000 4527.8 3397.6 2759.3 2586.1 6760.9 5377.4 5109.4 4123.8 4124.5 4233.1 TRUE FALSE FALSE 3997.058148 3502.276029 2908.476104 2691.572336 6262.161877 5274.835054 5306.47127 4593.236723 3954.486364 4207.921333 0.949888991 0.83230549 0.691190703 0.639644167 1.488184161 1.253548875 1.261067128 1.091569057 0.939771933 1 12.03889202 -5.75521827 24.99987393 0.91897748 1.271265945 0.646263035 0.150047096 93.75794877 376767.832 0.02419856 0.047444984 1.76E-06 5.75521827 0.352288465 SVVS(ph)FDKVKEPR ddPTM_HeLa_CUDC101_4h_R1 1 SVVSFDKVKEPR 12 2 Q15424-2;Q15424;Q15424-4;Q15424-3 Q15424-2 SAFB Scaffold attachment factor B1 1 0 S(0.333)VVS(0.667)FDKVKEPR 161.87 0.00067917 22309000 2738.6 2398 2722.8 2705 3506.2 3364.4 2705.8 3526.3 2581.3 2402.8 TRUE FALSE FALSE 2417.585459 2471.879538 2870.002804 2815.321592 3247.554611 3300.229675 2810.163612 3927.719738 2474.897721 2388.508039 1.012173884 1.034905262 1.201588087 1.178694627 1.35965823 1.381711772 1.176535129 1.644423914 1.036168889 1 11.22189402 -5.755151712 0.515976359 0.990008753 1.501927818 0.715393825 0.104859074 0.482394577 0.201931341 0.023840113 0.116125458 1.76E-06 5.755151712 0.511919065 TASISS(ph)SPSEGTPT(ph)VGSYGCTPQSLPK ddPTM_HeLa_CUDC101_4h_R1 1 TASISSSPSEGTPTVGSYGCTPQSLPK 27 0 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 2 0 T(0.016)AS(0.006)IS(0.106)S(0.434)S(0.434)PS(0.006)EGT(0.107)PT(0.889)VGS(0.001)YGCTPQSLPK 117.01 1.56E-09 0 2044.8 1768.9 1878.4 1725.4 1642.6 1551.5 1206 608.79 2259.6 1466.7 TRUE FALSE FALSE 1805.111644 1823.397712 1979.951986 1795.76927 1521.428671 1521.907722 1252.515824 678.0921928 2166.458332 1457.976003 1.238094207 1.250636299 1.358014111 1.231686438 1.043521064 1.043849638 0.85907849 0.465091463 1.485935521 1 10.50975126 -4.15574602 1.147219215 1.150595477 0.016138796 0.718998246 0.145371693 0.783898824 0.71398974 0.019802082 1.125979475 6.99E-05 4.15574602 -1.13445668 down EMEHNTVCAAGT(ph)SPVGEIGEEK ddPTM_HeLa_CUDC101_4h_R1 5 EMEHNTVCAAGTSPVGEIGEEK 22 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 EMEHNTVCAAGT(0.981)S(0.019)PVGEIGEEK;EMEHNTVCAAGT(0.991)S(0.009)PVGEIGEEK;EMEHNTVCAAGT(0.997)S(0.003)PVGEIGEEK;EMEHNTVCAAGT(0.5)S(0.5)PVGEIGEEK;EMEHNTVCAAGT(0.987)S(0.013)PVGEIGEEK ;;;; 193.42 1.24E-18 326215000 21147.2 10668.26 9340.93 8962.59 26689.7 20768.27 19159.03 17720.1 20515.56 12618.16 TRUE FALSE FALSE 18668.35727 10996.93645 9845.928931 9328.12316 24720.854 20372.14985 19898.0002 19737.28456 19669.89993 12543.10662 1.488336011 0.876731481 0.784967331 0.743685232 1.97087171 1.624170986 1.586369374 1.573556309 1.568184065 1 13.61460709 -5.75482573 24.99992906 1.138914562 1.676817506 0.527324245 0.279995327 118.0572841 446258.2734 0.044377664 0.087126986 1.76E-06 5.75482573 0.537902943 RPPS(ph)PEPSTK ddPTM_HeLa_CUDC101_4h_R1 1 RPPSPEPSTK 10 1 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 RPPS(1)PEPSTK 74.537 0.029645 6508000000 4830.8 3839.4 4982.4 4470.7 4253.8 3985.4 3890.5 3507.1 4164 4762.9 TRUE FALSE FALSE 4264.540947 3957.687363 5251.763615 4653.03447 3940.005649 3909.385135 4040.557888 3906.334088 3992.358158 4734.570059 0.900724014 0.835912726 1.109237703 0.982778671 0.832178128 0.825710695 0.85341601 0.825066276 0.843235628 1 12.20901771 -5.754821519 24.94282691 0.957124375 0.834874259 0.33600841 0.075505018 119.614915 450826.2344 0.010498916 0.020613129 1.76E-06 5.754821519 -0.122250116 KAASPS(ph)PQS(ph)VR ddPTM_HeLa_CUDC101_4h_R1 1 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KAAS(0.405)PS(0.653)PQS(0.942)VR 96.866 0.032955 111810000 7256.2 7267.8 6299.2 6683.8 6676.5 6215.8 5839.8 5652.3 7386.7 7240.2 TRUE FALSE FALSE 6405.639236 7491.712304 6639.753806 6956.394254 6183.987896 6097.243971 6065.043042 6295.734985 7082.2171 7197.134968 0.890026276 1.040929806 0.922555133 0.966550479 0.859229113 0.84717655 0.842702418 0.87475572 0.984032831 1 12.813207 -5.754716155 23.36755274 0.953626338 0.854390677 0.634413896 0.040621661 45.63899611 158621.0061 0.007059578 0.013845493 1.76E-06 5.754716155 -0.099235662 ASGDPGASGMS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 ASGDPGASGMSPR 13 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 ASGDPGASGMS(1)PR;ASGDPGAS(0.001)GMS(0.999)PR;ASGDPGAS(0.001)GMS(0.999)PR;ASGDPGASGMS(1)PR ;;; 203.32 5.10E-17 369279000 24999.3 23241.3 24214.6 22260 23213.6 21182.1 20261.4 20770.9 24998 22993 TRUE FALSE FALSE 22068.91995 23957.33691 25523.71452 23167.85902 21501.17898 20778.08673 21042.88899 23135.3753 23967.57186 22856.23661 0.96555353 1.048175048 1.116706786 1.013634021 0.940713878 0.909077338 0.920662896 1.012212802 1.048622845 1 14.48030026 -5.754689784 24.58807114 1.001674853 0.941267195 0.325002308 0.050540692 155.7258561 567285.9459 0.007955405 0.015625673 1.76E-06 5.754689784 -0.060407659 IQIVTAVDASGS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 IQIVTAVDASGSPK 14 0 C9JMI6;C9JKS0;P49116;P49116-2 C9JMI6 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 IQIVTAVDAS(0.027)GS(0.973)PK 174.59 2.92E-07 25901000 1477 1338 1144.7 1318.6 1016.4 1045.3 831.33 821.16 1433.3 1308 TRUE FALSE FALSE 1303.868299 1379.222194 1206.585945 1372.378207 941.422197 1025.362644 863.3946766 914.6375352 1374.218767 1300.219958 1.002805942 1.06076067 0.927986021 1.055496956 0.724048413 0.788607064 0.664037397 0.703448312 1.056912532 1 10.34453999 -5.75458765 25 1.003583015 0.72093336 0.902978619 0.047612032 30.95228112 112934.9983 0.005950803 0.011691946 1.76E-06 5.75458765 -0.282649655 APS(ph)PPVEHPR ddPTM_HeLa_CUDC101_4h_R1 2 APSPPVEHPR 10 0 Q86WR7;Q86WR7-2 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 APS(1)PPVEHPR;APS(1)PPVEHPR ; 114.24 0.0043533 162969000 635.35 651.8 650.16 613.27 488.57 492.63 427.7 384.23 647.73 618.23 TRUE FALSE FALSE 560.8752361 671.8811854 685.3096162 638.2818014 452.5291645 483.2339035 444.1965323 427.9691901 621.0302952 614.5527405 0.912655984 1.093284825 1.115135563 1.038611919 0.736355295 0.786318035 0.722796439 0.696391313 1.010540275 1 9.263393017 -5.75439834 24.99908986 0.987027607 0.738192634 0.827008461 0.063968192 68.76671809 244152.8468 0.011403146 0.022419465 1.76E-06 5.75439834 -0.248834973 QNTVSK(ac)GPFSK ddPTM_HeLa_CUDC101_4h_R1 2 QNTVSKGPFSK 11 1 A0A3B3IS53;A0A3F2YNX6;Q92794;A5PLL3 A0A3B3IS53 KAT6A;MYST3 Histone acetyltransferase KAT6A;Histone acetyltransferase 0 1 ; QNTVSK(1)GPFSK;QNTVSK(1)GPFSK 133.05 0.00074986 2258300 1001.02 939.07 1079.52 1777.59 1799.93 1445.42 1535.65 1579.65 336.45 46.705 FALSE TRUE FALSE 883.681953 968.0016336 1137.882117 1850.087804 1667.15275 1417.851022 1594.880535 1759.470971 322.5813886 46.42719658 19.03371339 20.84988336 24.50895596 39.84922502 35.90896872 30.53923403 34.3522903 37.89742005 6.948112579 1 5.536898264 -7.64326475 0.382886809 1.46E-15 38.2937776 0.902109481 3.93134128 0.218004049 0.090092659 3.089987867 2.502168003 2.27E-08 7.64326475 38.2937776 QNVAYEYLCHLEEAKR ddPTM_HeLa_CUDC101_4h_R1 1 QNVAYEYLCHLEEAKR 16 1 P46940;A0A0J9YXZ5;A0A087X225 P46940 IQGAP1 Ras GTPase-activating-like protein IQGAP1 0 0 72.209 0.019689 9247900 2462.7 2237 2701.4 2487.3 2946.1 2909.7 2587 2549.4 3082.1 2025.8 FALSE FALSE TRUE 2174.026039 2305.919319 2847.445855 2588.742845 2728.772072 2854.20232 2686.781457 2839.613391 2955.054533 2013.750452 1.079590591 1.145086928 1.414001349 1.285533092 1.355069627 1.417356514 1.334217681 1.410111858 1.467438297 1 10.9756692 -6.964300582 2.243202171 1.035739123 1.367479301 0.107932094 0.144195817 0.059794231 0.604816607 0.008347014 0.011036884 1.09E-07 6.964300582 0.331740178 LYSILQGDS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 1 LYSILQGDSPTK 12 0 O15042-2;O15042;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 0 LYSILQGDS(0.98)PT(0.02)K 119.17 0.0035205 25787000 2452.8 2368.4 2031.9 2231.1 2062.4 2044.5 1790.9 1608.6 2133.5 2344.5 TRUE FALSE FALSE 2165.286502 2441.367597 2141.75066 2322.093902 1910.260861 2005.504569 1859.975613 1791.716522 2045.556227 2330.55481 0.929086282 1.047547814 0.918987467 0.996369573 0.819659273 0.86052667 0.798082759 0.768793986 0.87771213 1 11.18645773 -5.754354777 24.97172887 0.970391729 0.814271207 0.681656249 0.049941417 59.22832485 208765.4415 0.006212395 0.012216694 1.76E-06 5.754354777 -0.156120522 NTDSWAPPLEIVNHRS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 NTDSWAPPLEIVNHRSPSR 19 1 Q9NRR4;H0YB67 Q9NRR4 DROSHA Ribonuclease 3 1 0 NTDSWAPPLEIVNHRS(0.801)PS(0.199)R 71.427 0.007179 8791300 699.41 789.12 620.23 632.42 959.15 990.55 697.56 836.44 727.75 790.84 TRUE FALSE FALSE 617.42622 813.4318519 653.7615099 658.2128212 888.3954154 971.6569091 724.4651229 931.6569486 697.751837 786.1360485 0.785393598 1.034721475 0.831613702 0.837275968 1.13007846 1.235990782 0.921551841 1.185109054 0.887571354 1 9.618635196 -5.754294962 24.96891224 0.898213611 1.112552404 0.524268228 0.103573806 115.5614536 403870.1445 0.016583838 0.032617613 1.76E-06 5.754294962 0.214338793 VAELALSLSSTS(ph)DDEPPSSVSHGAK ddPTM_HeLa_CUDC101_4h_R1 1 VAELALSLSSTSDDEPPSSVSHGAK 25 0 Q8N1G2;Q5T7F5 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 1 0 VAELALS(0.007)LS(0.005)S(0.023)T(0.091)S(0.874)DDEPPSSVSHGAK 97.188 4.40E-06 12746000 2276.7 966.82 954.31 816.49 3159.1 2237 2287.1 1742.9 1959.4 1548.4 TRUE FALSE FALSE 2009.828677 996.6065782 1005.902885 849.7899914 2926.059487 2194.332952 2375.314213 1941.304691 1878.632703 1539.190048 1.305770317 0.64748767 0.65352741 0.552102057 1.901038465 1.425641333 1.543223474 1.261250808 1.220533296 1 10.58795566 -5.754274208 24.99951687 1.028421501 1.525880416 0.505439787 0.291255123 145.3562914 507148.2567 0.047574894 0.093579625 1.76E-06 5.754274208 0.497458915 HAPTYTIPLSPVLS(ph)PTLPAEAPTAQVPPSLPR ddPTM_HeLa_CUDC101_4h_R1 1 HAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPR 32 0 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 1 0 HAPT(0.004)YT(0.014)IPLS(0.433)PVLS(0.509)PT(0.039)LPAEAPTAQVPPSLPR 77.233 2.90E-06 36218000 774.55 664.77 782.55 636.46 927.68 895 695.63 743.96 633.25 759.47 TRUE FALSE FALSE 683.7584231 685.2507758 824.8570201 662.4175898 859.2468946 877.9293662 722.4606821 828.6493992 607.147167 754.9526387 0.90569711 0.90767386 1.092594393 0.877429333 1.138146753 1.162893301 0.956961596 1.097617727 0.804218882 1 9.560242331 -5.754216067 24.99997208 0.956998103 1.084765218 0.408735191 0.089680235 133.1622878 460871.9179 0.011110875 0.021862764 1.76E-06 5.754216067 0.127767115 IDGATQSS(ph)PAEPK ddPTM_HeLa_CUDC101_4h_R1 6 IDGATQSSPAEPK 13 0 Q32MZ4-3;Q32MZ4-2;Q32MZ4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 IDGATQS(0.064)S(0.936)PAEPK;IDGATQS(0.185)S(0.815)PAEPK;IDGATQS(0.078)S(0.922)PAEPK;IDGATQS(0.059)S(0.941)PAEPK;IDGAT(0.005)QS(0.229)S(0.765)PAEPK;IDGATQS(0.063)S(0.937)PAEPK ;;;;; 201.3 9.23E-17 1642367900 35992.4 31735.2 30645.5 30727.9 31358 29279.8 28461.6 26729.2 30417.9 30511.9 TRUE FALSE FALSE 31773.42543 32712.9239 32302.28843 31981.11658 29044.78281 28721.3366 29559.37345 29771.94408 29164.06129 30330.41386 1.047576389 1.078551847 1.065013111 1.054424009 0.957612479 0.946948391 0.974578638 0.981587136 0.961545115 1 14.88847756 -5.754101141 24.98291337 1.033206393 0.964550484 0.518323195 0.032728198 102.026156 347343.2502 0.004567545 0.008988522 1.76E-06 5.754101141 -0.068655909 MSQPGSPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 5 MSQPGSPSPK 10 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8Y8C1;A0A2R8YFD8;A0A2R8Y445;A0A2R8YER1;A0A2R8YE38;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8YD40;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 MSQPGS(0.01)PS(0.99)PK;MS(0.003)QPGS(0.159)PS(0.838)PK;MS(0.001)QPGS(0.038)PS(0.961)PK;MSQPGS(0.105)PS(0.895)PK;MSQPGS(0.09)PS(0.91)PK ;;;; 173.76 2.33E-07 2084250000 49064.3 40168.4 41972.6 40245.2 40939.6 37829.6 37624.2 33653.3 39010 38588 TRUE FALSE FALSE 43313.05713 41405.94079 44241.76572 41886.57321 37919.56727 37108.06341 39075.378 37484.25564 37401.99129 38358.47686 1.129165198 1.079446948 1.153376498 1.091976967 0.98855769 0.9674019 1.01868951 0.977209178 0.975064558 1 15.22725781 -5.753807208 24.86184985 1.073587464 0.988690423 0.387465862 0.051414536 146.9341174 478633.9333 0.008393056 0.016537876 1.76E-06 5.753807208 -0.084897041 SYES(ph)SEDCSEAAGSPAR ddPTM_HeLa_CUDC101_4h_R1 2 SYESSEDCSEAAGSPAR 17 0 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 SYES(0.5)S(0.5)EDCSEAAGSPAR;SYES(0.983)S(0.017)EDCSEAAGSPAR ; 247.02 6.99E-56 17816600 5270.6 4223 4030.3 4361.7 3819.2 3056.8 3559.6 4490.9 4180.5 3768.3 TRUE FALSE FALSE 4652.788258 4353.105625 4248.190209 4539.588979 3537.465225 2998.496633 3696.894964 5002.125903 4008.178021 3745.885984 1.242106214 1.162103076 1.134094905 1.211886587 0.94436009 0.800477282 0.98692138 1.335365231 1.070021361 1 11.87109127 -5.753713897 24.99880429 1.128715908 0.9991979 0.143344862 0.140209661 278.774865 902076.6649 0.022431705 0.044208962 1.76E-06 5.753713897 -0.129518008 RGNDPLTS(ph)SPGR ddPTM_HeLa_CUDC101_4h_R1 2 RGNDPLTSSPGR 12 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RGNDPLT(0.001)S(0.5)S(0.5)PGR;RGNDPLT(0.012)S(0.957)S(0.031)PGR ; 146.67 0.0018154 466346000 8225.8 7245.5 7359.2 7281.1 8967.4 8190.4 7603.2 7651.2 8267.1 8484.5 TRUE FALSE FALSE 7261.584194 7468.725267 7757.060612 7578.05473 8305.892768 8034.181766 7896.457971 8522.181681 7926.326639 8434.033817 0.8609859 0.885546042 0.919733165 0.898508933 0.984806671 0.952590651 0.936261123 1.010451448 0.939802568 1 13.04200709 -5.753671951 24.97353229 0.925299788 0.967227246 0.292919509 0.039504846 316.3812601 1017207.552 0.008351971 0.016460911 1.76E-06 5.753671951 0.041927459 S(ph)LPSTSSTSSTK ddPTM_HeLa_CUDC101_4h_R1 2 SLPSTSSTSSTK 12 0 A0A590UJA3;S4R3W2;A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UK73;B1AKN7 A0A590UJA3 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 S(0.903)LPS(0.095)T(0.002)SSTSSTK;S(0.999)LPS(0.001)TSSTSSTK ; 147.96 0.00078892 33408000 5001.5 4347.9 4205.7 4025 4473 4425.3 3638.2 2368.4 4785.4 5650.7 TRUE FALSE FALSE 4415.231752 4481.853645 4433.072864 4189.156898 4143.035701 4340.894776 3778.526593 2638.009083 4588.143787 5617.089385 0.786035516 0.797896088 0.789211736 0.745787829 0.737576958 0.772801442 0.672684078 0.469639862 0.816818724 1 12.45560705 -5.753624352 0.068977585 1.440696102 5.66E-16 0.599938733 0.079147467 19.14439582 0.395714732 3.135885185 5.179740761 1.76E-06 5.753624352 -1.440696102 LGVCAGES(ph)S(ph)SWGSVRPLMK ddPTM_HeLa_CUDC101_4h_R1 1 LGVCAGESSSWGSVRPLMK 19 1 Q8IY26 Q8IY26 PPAPDC2 Presqualene diphosphate phosphatase 2 0 LGVCAGES(0.826)S(0.826)S(0.347)WGSVRPLMK 53.395 0.026313 14590000 4069.9 3411.7 3261.4 3384.3 4248.7 4090.9 3863.1 3250.6 4368.1 3723.6 TRUE FALSE FALSE 3592.832492 3516.810433 3437.721149 3522.326382 3935.281866 4012.872898 4012.101061 3620.635165 4188.045069 3701.451862 0.970654928 0.950116485 0.928749387 0.951606698 1.06317251 1.084134834 1.083926311 0.978166217 1.131460093 1 11.85387555 -5.753579823 24.93689944 0.975876506 1.056875786 0.193280991 0.059998887 104.2104451 330637.2717 0.005361361 0.010565092 1.76E-06 5.753579823 0.080999281 TADGRVS(ph)PAGGTLDDKPK ddPTM_HeLa_CUDC101_4h_R1 2 TADGRVSPAGGTLDDKPK 18 2 C9JA69;Q8WY36-2;Q8WY36 C9JA69 BBX HMG box transcription factor BBX 1 0 T(0.051)ADGRVS(0.949)PAGGTLDDKPK;T(0.215)ADGRVS(0.779)PAGGT(0.006)LDDKPK ; 117.22 0.00012373 110860000 5672 5434.7 4960.2 5125.8 5324.4 4738.1 4290.2 5515.6 5979.4 5388.5 TRUE FALSE FALSE 5007.136758 5602.136665 5228.363416 5334.85228 4931.62962 4647.728637 4455.674451 6143.473609 5732.926601 5356.448962 0.934786608 1.045867646 0.976087601 0.995968097 0.920690117 0.867688401 0.831833642 1.146930299 1.07028493 1 12.38706117 -5.753343701 24.52706755 0.977122588 0.928639236 0.052593694 0.087679842 308.4705212 934547.4252 0.011434877 0.022545574 1.76E-06 5.753343701 -0.048483353 FHDTS(ph)SPLMVTPPSAEAHWAVR ddPTM_HeLa_CUDC101_4h_R1 2 FHDTSSPLMVTPPSAEAHWAVR 22 0 Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R165;Q9UBC2-4 Q9UBC2-3 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 FHDT(0.141)S(0.429)S(0.429)PLMVTPPSAEAHWAVR;FHDT(0.22)S(0.76)S(0.02)PLMVTPPSAEAHWAVR ; 101.42 8.00E-05 28125000 2938.57 1475.13 1502.59 1452.9 3598.7 2490.78 3114.14 2831.06 2882.8 1848.17 TRUE FALSE FALSE 2594.115279 1520.577007 1583.82456 1512.155542 3333.231071 2443.272521 3234.253423 3153.336427 2763.969764 1837.177003 1.412011622 0.82767039 0.862096879 0.823086474 1.814322227 1.329905893 1.76044737 1.716403168 1.504465688 1 10.84327491 -5.753320825 24.98606193 1.117594531 1.63954212 0.55942996 0.251634288 120.6474273 371307.3527 0.038183556 0.075314419 1.76E-06 5.753320825 0.52194759 EEEVS(ph)CSGPLSQK ddPTM_HeLa_CUDC101_4h_R1 1 EEEVSCSGPLSQK 13 0 F5GY68;F5H0F9;Q9UJX4-2;Q9UJX4-3;Q9UJX4 F5GY68 ANAPC5 Anaphase-promoting complex subunit 5 1 0 EEEVS(0.999)CS(0.001)GPLSQK 121.24 0.00020235 0 734.17 448.96 750.59 577.68 888.06 865.68 643.16 812.09 928.29 684.81 TRUE FALSE FALSE 648.1117055 462.7919255 791.1691658 601.2402873 822.5495831 849.1685963 667.9668966 904.535043 890.0254933 680.7367197 0.952073962 0.679839815 1.1622249 0.883220003 1.208322629 1.247425872 0.981241172 1.328759 1.307444519 1 9.410953122 -5.753282803 24.99543628 0.961567711 1.180422402 0.207276219 0.177176482 142.6770547 437223.2214 0.018770211 0.037029217 1.76E-06 5.753282803 0.218854691 QTEQTY(ph)WQAT(ph)PFR ddPTM_HeLa_CUDC101_4h_R1 1 QTEQTYWQATPFR 13 0 Q2HIZ1;E7ES19;F5H4Z8;P49746-2;P49746;P35443 Q2HIZ1 THBS3;THBS4 Thrombospondin-3;Thrombospondin-4 2 0 QT(0.002)EQT(0.073)Y(0.925)WQAT(1)PFR 85.837 0.0015408 0 1682.1 1350.6 1510.9 1270.3 1819.4 1887.4 1483.4 1205.2 1406.9 1383.3 TRUE FALSE FALSE 1484.926788 1392.210385 1592.583824 1322.108325 1685.186487 1851.40099 1540.615235 1342.395096 1348.906987 1375.07207 1.079890153 1.012463576 1.158182076 0.961482931 1.225525937 1.346402876 1.120388719 0.976236174 0.980971846 1 10.42529152 -5.753204236 24.99424767 1.04177196 1.17660377 0.295053576 0.10113537 180.1230566 546681.835 0.014543965 0.028691755 1.77E-06 5.753204236 0.13483181 QPLLLSEDEEDTKR ddPTM_HeLa_CUDC101_4h_R1 1 QPLLLSEDEEDTKR 14 1 Q99613-2;Q99613;B5ME19;H3BPE4 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 0 0 113.54 0.002842 12992000 1771.1 1639.6 1556.1 1620.4 1509.6 1376.1 1296.4 1516.5 1508 1445.6 FALSE FALSE TRUE 1563.494343 1690.114133 1640.227473 1686.486916 1398.239816 1349.853185 1346.402582 1689.13223 1445.839602 1437.001507 1.088025542 1.17613943 1.141423628 1.173615273 0.973025991 0.93935405 0.936952798 1.17545613 1.006150373 1 10.48884586 -4.201499347 21.60539487 1.050159204 1.175461657 0.159760498 0.08739062 23645.78623 8521415.1 0.013033699 28.48363481 6.29E-05 4.201499347 0.125302454 ELAEAAKEPLPVEQDDDIEVIVDETSDHTEETS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 1 ELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVR 36 1 C9JAY7;E7EVC7;Q676U5-4;Q676U5-5;Q676U5-3;Q676U5-2;Q676U5;C9JK97;C9J1B2 C9JAY7 ATG16L1 Autophagy-related protein 16-1 1 0 ELAEAAKEPLPVEQDDDIEVIVDET(0.008)S(0.008)DHT(0.03)EET(0.283)S(0.672)PVR 99.23 4.47E-13 10309000 3328.4 1867.5 1799.1 1436.8 4940.8 3462.3 2898.2 2871 3700 3144.8 TRUE FALSE FALSE 2938.249998 1925.035461 1896.364788 1495.398914 4576.327027 3396.262396 3009.984545 3197.823035 3547.484434 3126.09459 0.939910778 0.615795654 0.606624251 0.478360098 1.463911886 1.086423427 0.962857795 1.022945066 1.134797535 1 11.61014572 -5.753090228 24.99999638 0.8800657 1.118406695 0.29855106 0.232923983 255.4091497 764769.6199 0.035945686 0.070945128 1.77E-06 5.753090228 0.238340996 (ac)S(ph)ETAPAETATPAPVEKSPAK ddPTM_HeLa_CUDC101_4h_R1 4 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 1 0 S(0.893)ET(0.05)APAET(0.05)AT(0.006)PAPVEKSPAK;S(0.407)ET(0.021)APAET(0.173)AT(0.018)PAPVEKS(0.38)PAK;S(0.875)ET(0.074)APAET(0.007)AT(0.001)PAPVEKS(0.043)PAK;S(0.896)ET(0.032)APAET(0.005)AT(0.002)PAPVEKS(0.065)PAK ;;; 107.5 5.60E-08 1633290000 8879.19 12039 11166.05 10075.5 7816.15 6505.82 6132.07 9238.32 7026.11 10569.4 TRUE FALSE FALSE 7838.384808 12409.90732 11769.72044 10486.42244 7239.568186 6381.732323 6368.585994 10289.97301 6736.490772 10506.53274 0.746048673 1.181161057 1.120228788 0.998085924 0.689053979 0.607406124 0.606154871 0.979388088 0.641171635 1 13.35899902 -5.753082814 24.95213461 0.929764444 0.704254961 0.273682197 0.179178052 189.946057 567161.3082 0.025919196 0.051155882 1.77E-06 5.753082814 -0.225509483 SQQTSFQSS(ph)PCNK ddPTM_HeLa_CUDC101_4h_R1 1 SQQTSFQSSPCNK 13 0 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 SQQTSFQS(0.01)S(0.99)PCNK 153.81 0.00017969 16278000 3867.7 3248 3568 3179.7 3243.6 3005.7 2943.6 2614.2 3435.8 3140.4 TRUE FALSE FALSE 3414.334069 3348.06703 3760.896873 3309.38191 3004.32609 2948.37128 3057.135638 2911.789961 3294.17487 3121.720761 1.09373462 1.072506892 1.204751213 1.060114649 0.962394243 0.944469895 0.979311051 0.932751576 1.055243285 1 11.60812578 -5.752891031 6.346893812 1.062118615 0.955173719 0.576618332 0.051547822 0.119051593 19.21897497 0.009142428 0.017736727 1.77E-06 5.752891031 -0.106944896 AAS(ph)ADYLRPR ddPTM_HeLa_CUDC101_4h_R1 2 AASADYLRPR 10 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B0QYZ7 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 AAS(1)ADYLRPR;AAS(0.995)ADY(0.005)LRPR ; 134.75 0.0010073 22943000 8995.5 7588.8 7764.2 7811.3 7585.8 6017.7 5154.7 3349.2 7525.4 8910.3 TRUE FALSE FALSE 7941.061126 7822.601933 8183.956137 8129.878577 7026.210647 5902.922399 5353.518506 3730.45939 7215.199827 8857.301139 0.896555396 0.883181209 0.923978536 0.917873114 0.793267671 0.666447071 0.604418707 0.421173372 0.814604778 1 13.11265145 -4.155363638 0.506299484 0.957183106 2.59E-15 0.889597617 0.056068506 0.713003449 0.113595265 0.009041203 0.413488536 6.99E-05 4.155363638 -0.957183106 down S(ph)PSKPLPEVTDEYKNDVK ddPTM_HeLa_CUDC101_4h_R1 2 SPSKPLPEVTDEYKNDVK 18 2 P05455;E7ERC4;E9PFL9;E9PGX9 P05455 SSB Lupus La protein 1 0 S(0.948)PS(0.048)KPLPEVT(0.004)DEYKNDVK;S(0.76)PS(0.24)KPLPEVTDEYKNDVK ; 105.95 0.00057415 139892000 5970.7 5167.8 5241.9 5122.2 5240.8 4896.5 4158 4855.6 5554 5479.2 TRUE FALSE FALSE 5270.823597 5327.013793 5525.29297 5331.105456 4854.196625 4803.107421 4318.375453 5408.341877 5325.061769 5446.609475 0.967725632 0.978042178 1.014446326 0.978793409 0.891232729 0.881852727 0.792855716 0.992974051 0.977683785 1 12.41114271 -5.752677622 4.465139112 0.986274798 0.880776649 0.503939432 0.046681083 0.109281103 5.244812792 0.006296832 0.012395436 1.77E-06 5.752677622 -0.105498149 EEGGEGT(ph)PVKQDLSAPPGYTLTENVAR ddPTM_HeLa_CUDC101_4h_R1 1 EEGGEGTPVKQDLSAPPGYTLTENVAR 27 1 Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5;Q9Y4B5-4 Q9Y4B5-2 MTCL1 Microtubule cross-linking factor 1 1 0 EEGGEGT(0.998)PVKQDLS(0.002)APPGYTLTENVAR 101.2 1.31E-06 20316000 1021 662.95 686.58 791.12 1065.9 931.54 980.24 832.14 833.72 926.2 TRUE FALSE FALSE 901.3199277 683.3747037 723.6985916 823.3852931 987.2706806 913.7724266 1018.048185 926.867454 799.3537087 920.6909212 0.978960373 0.742241167 0.786038588 0.894312384 1.072314995 0.99248554 1.105743699 1.006708584 0.868210699 1 9.84657311 -5.752614007 24.99438557 0.946194643 1.044999131 0.302711642 0.094153478 278.6679332 789210.969 0.015763621 0.031151436 1.77E-06 5.752614007 0.098804489 RGS(ph)SPDVHALLEITEESDAVLVDKSDSD ddPTM_HeLa_CUDC101_4h_R1 3 RGSSPDVHALLEITEESDAVLVDKSDSD 28 2 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 RGS(0.5)S(0.5)PDVHALLEITEESDAVLVDKSDSD;RGS(0.5)S(0.5)PDVHALLEITEESDAVLVDKSDSD;RGS(0.5)S(0.5)PDVHALLEITEESDAVLVDKSDSD ;; 133.58 2.56E-16 74601000 2088.71 1801.82 1686.22 1538.77 2617.67 2191.87 2206.41 1898.63 2141.26 1987.5 TRUE FALSE FALSE 1843.87458 1857.331939 1777.382154 1601.527692 2424.569699 2150.063732 2291.511973 2114.762365 2052.996356 1975.678262 0.93328687 0.940098383 0.899631376 0.81062171 1.227208775 1.088266128 1.159860903 1.070398154 1.039134963 1 10.94813231 -5.752483823 24.99999964 0.949790577 1.134666344 0.661727571 0.069452126 93.02685905 259688.3569 0.009705322 0.019185671 1.77E-06 5.752483823 0.184875767 TIDLGAAAHYT(ph)GDKASPDQNASTHTPQSSVK ddPTM_HeLa_CUDC101_4h_R1 1 TIDLGAAAHYTGDKASPDQNASTHTPQSSVK 31 1 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 1 0 T(0.001)IDLGAAAHY(0.218)T(0.243)GDKAS(0.243)PDQNAS(0.121)T(0.121)HT(0.05)PQS(0.002)S(0.001)VK 44.264 0.022302 19713000 746.04 214.88 228.9 264.75 1160.4 746.13 760.36 684.35 649.88 716.4 TRUE FALSE FALSE 658.5903221 221.5001981 241.2750264 275.5476493 1074.799604 731.8988134 789.6873399 762.2536378 623.0916713 712.1388209 0.924806095 0.31103514 0.338803361 0.386929685 1.509255741 1.027747388 1.108895228 1.070372258 0.874958158 1 9.47601469 -5.752298366 24.99989839 0.820971922 1.163246624 0.363359371 0.296027787 266.6775624 729334.9225 0.050934305 0.100733139 1.77E-06 5.752298366 0.342274702 SAPASPT(ph)HPGLMSPR ddPTM_HeLa_CUDC101_4h_R1 1 SAPASPTHPGLMSPR 15 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 1 0 SAPAS(0.083)PT(0.765)HPGLMS(0.152)PR 84.31 0.0027996 0 1200 958.17 877.34 896.75 1537.4 1508.3 1223.4 1362.4 1497.9 1077.2 TRUE FALSE FALSE 1059.337819 987.690082 924.7716542 933.3233411 1423.989065 1479.53169 1270.586948 1517.490109 1436.155928 1070.792766 0.989302368 0.92239144 0.863632706 0.871619019 1.329845615 1.38171618 1.186585292 1.417165073 1.341208096 1 10.06446358 -5.75224506 24.99945978 0.970133255 1.322445661 0.571518451 0.139025297 57.63349822 156704.9519 0.011294139 0.022338251 1.77E-06 5.75224506 0.352312406 NKS(ph)TESLQANVQR ddPTM_HeLa_CUDC101_4h_R1 2 NKSTESLQANVQR 13 1 P26373;J3QSB4 P26373 RPL13 60S ribosomal protein L13 1 0 NKS(0.97)T(0.026)ES(0.004)LQANVQR;NKS(0.538)T(0.187)ES(0.275)LQANVQR ; 156.57 0.00043225 55672000 4114.8 2919.1 3165.8 3369.2 3166.7 2988.2 3110.7 2759.4 2900.6 3077.5 TRUE FALSE FALSE 3632.469382 3009.034011 3336.952724 3506.610539 2933.09885 2931.205064 3230.680741 3073.518942 2781.03604 3059.194893 1.187393909 0.983603241 1.090794422 1.146252743 0.958781298 0.958162251 1.056055875 1.004682294 0.909074491 1 11.5789363 -5.75221504 24.99932402 1.085613319 0.99623309 0.024462801 0.083346941 235.5155971 638277.3285 0.011675942 0.023101479 1.77E-06 5.75221504 -0.089380228 RNSVASPTS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 RNSVASPTSPTR 12 1 Q96HB5-2;Q96HB5;Q96HB5-5;Q96HB5-3;Q96HB5-4 Q96HB5-2 CCDC120 Coiled-coil domain-containing protein 120 1 0 RNSVAS(0.013)PT(0.21)S(0.714)PT(0.063)R 67.415 0.032997 2197700 767.05 495.17 632.87 698.74 496.14 479.45 570.53 451.86 855.52 622.38 TRUE FALSE FALSE 677.1375618 510.4256008 667.0848665 727.2376374 459.5407407 470.3052901 592.5355332 503.2979159 820.2551035 618.6780561 1.094490996 0.825026192 1.078242326 1.175470231 0.742778471 0.760177746 0.957744545 0.813505362 1.325818971 1 9.273045054 -5.752204318 24.99999262 1.038340059 0.824324325 0.461532027 0.134851515 123.4032757 334059.147 0.014646545 0.028970926 1.77E-06 5.752204318 -0.214015734 RSEDESET(ph)EDEEEKSQEDQEQK ddPTM_HeLa_CUDC101_4h_R1 1 RSEDESETEDEEEKSQEDQEQK 22 2 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 1 0 RS(0.008)EDES(0.076)ET(0.833)EDEEEKS(0.084)QEDQEQK 71.969 0.002601 169760000 991.48 1164.7 994.75 1078 884.2 814.49 886.26 747.82 1184.6 1159.3 TRUE FALSE FALSE 875.2602174 1200.583026 1048.529194 1121.9655 818.9743276 798.9549603 920.4433451 832.948806 1135.770287 1152.404432 0.759507854 1.041807019 0.909862167 0.973586588 0.710665722 0.693293898 0.798715555 0.722792088 0.985565705 1 10.1704314 -5.751692697 24.99661425 0.90413704 0.733457912 0.597476619 0.08188526 163.1745073 418478.9062 0.014987297 0.029676327 1.77E-06 5.751692697 -0.170679128 QVDLESNPQNRS(ph)PESRPSVVYPSTK ddPTM_HeLa_CUDC101_4h_R1 1 QVDLESNPQNRSPESRPSVVYPSTK 25 2 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 0 QVDLES(0.071)NPQNRS(0.907)PES(0.01)RPS(0.01)VVY(0.002)PSTK 54.235 0.0064516 74696000 1432.5 1406.5 1162.2 1181.5 1716.6 1431.5 1502.2 1283.3 1370.1 1495.2 TRUE FALSE FALSE 1264.584522 1449.832598 1225.032047 1229.686677 1589.969838 1404.196523 1560.140357 1429.385685 1313.623898 1486.306484 0.850823525 0.975460051 0.824212274 0.82734395 1.069745611 0.9447557 1.049676076 0.961703189 0.883817646 1 10.53751592 -5.751515734 24.9988266 0.916573843 1.00514809 0.383708498 0.066337417 237.1564306 597420.3524 0.011205406 0.022200025 1.77E-06 5.751515734 0.088574247 EGT(ph)PPPPPPSR ddPTM_HeLa_CUDC101_4h_R1 3 EGTPPPPPPSR 11 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;C9JQE8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 EGT(1)PPPPPPSR;EGT(1)PPPPPPSR;EGT(1)PPPPPPSR ;; 136.01 0.0078533 259085000 15243.4 15354 17626 16754.7 13455.1 13672.8 12988.1 14735.3 14427.4 16657.7 TRUE FALSE FALSE 13456.59176 15827.03854 18578.91488 17438.02909 12462.54408 13412.01412 13489.05537 16412.70699 13832.69647 16558.61926 0.812663879 0.955818737 1.1220087 1.053108886 0.75263184 0.809971768 0.814624405 0.991188138 0.83537741 1 14.01529476 -5.751495263 24.99932274 0.939553884 0.837846073 0.225371603 0.104473974 319.5936768 803446.5013 0.017281698 0.034234165 1.77E-06 5.751495263 -0.101707811 EGS(ph)PGDQAAALLTAR ddPTM_HeLa_CUDC101_4h_R1 1 EGSPGDQAAALLTAR 15 0 C9J0V9;F8WE52;C9JNK1;F8WDU5;Q8N720-2 C9J0V9 ZNF655 1 0 EGS(0.923)PGDQAAALLT(0.077)AR 100.69 0.0055506 6674700 910.42 877.18 929.59 915.67 828.33 805.35 726.59 688.16 977.47 998.16 TRUE FALSE FALSE 803.7019477 904.2048761 979.8464473 953.0149805 767.2257462 789.9892906 754.6148197 766.4973528 937.1782729 992.2228999 0.81000141 0.911292086 0.98752654 0.960484767 0.773239306 0.796181272 0.760529534 0.772505203 0.94452393 1 9.954520444 -5.751388076 24.96132981 0.917849045 0.776005442 0.692284673 0.051452574 144.8930422 359823.5832 0.011074543 0.021944375 1.77E-06 5.751388076 -0.141843603 AEDGATPSPS(ph)NETPK ddPTM_HeLa_CUDC101_4h_R1 1 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGATPS(0.022)PS(0.829)NET(0.148)PK 153.41 0.00014997 823470000 3755.1 28367 0 8559.4 3951.7 4519.9 3860.6 3674.5 4778 8371 TRUE FALSE FALSE 3314.93287 29240.95365 0 8908.489329 3660.190964 4433.690438 4009.504635 4092.790227 4581.048818 8321.20892 0.398371547 3.5140271 0 1.070576333 0.439862885 0.532818065 0.481841602 0.491850435 0.550526836 1 13.02257743 -5.751183417 24.27309598 0.904969276 0.489555494 0.076592223 0.897178097 412.3169732 975832.159 0.12782567 0.253233449 1.77E-06 5.751183417 -0.415413783 EGEEPTVYS(ph)DEEEPKDESARK ddPTM_HeLa_CUDC101_4h_R1 1 EGEEPTVYSDEEEPKDESARK 21 2 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 EGEEPT(0.225)VY(0.054)S(0.714)DEEEPKDES(0.007)ARK 63.979 0.010143 15684000 1649.3 1631 1294.5 1533.2 1367 1379.1 1268 1153.4 1597.2 1519.8 TRUE FALSE FALSE 1455.971554 1681.249177 1364.484586 1595.730523 1266.159133 1352.795965 1316.907185 1284.698394 1531.36274 1510.760162 0.963734411 1.112849822 0.9031775 1.056243448 0.83809407 0.895440586 0.871685141 0.850365548 1.013637226 1 10.56105893 -5.75098622 24.99996541 0.991251231 0.866705823 0.616349028 0.054807096 112.7220499 269586.1287 0.007263924 0.01440319 1.77E-06 5.75098622 -0.124545408 VDENENCSSLGS(ph)PSEPPQTLDLVR ddPTM_HeLa_CUDC101_4h_R1 2 VDENENCSSLGSPSEPPQTLDLVR 24 0 A0A0C4DGQ6;Q96P16-3;Q96P16 A0A0C4DGQ6 RPRD1A Regulation of nuclear pre-mRNA domain-containing protein 1A 1 0 VDENENCSSLGS(0.999)PS(0.001)EPPQTLDLVR;VDENENCSSLGS(0.991)PS(0.009)EPPQTLDLVR ; 194.07 1.58E-20 13654100 3071.2 2344.1 2457.63 2694.9 2235.22 2521.4 2026.05 2272.1 2793.1 2304.63 TRUE FALSE FALSE 2711.198592 2416.318943 2590.496912 2804.80967 2070.332274 2473.308496 2104.195427 2530.74668 2677.967236 2290.921958 1.183453056 1.054736471 1.13076611 1.224314805 0.903711393 1.079612724 0.918492845 1.104684806 1.168947387 1 11.1617126 -5.750925304 24.99996423 1.098273125 1.001257957 0.307151958 0.085992935 271.0742865 644545.4159 0.013556115 0.026886615 1.77E-06 5.750925304 -0.097015168 LTTTGQVT(ph)SPVKGASFVTSTNPR ddPTM_HeLa_CUDC101_4h_R1 2 LTTTGQVTSPVKGASFVTSTNPR 23 1 P49916-4;P49916-2;P49916-3;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 LTTTGQVT(0.749)S(0.25)PVKGASFVTSTNPR;LTTTGQVT(0.826)S(0.169)PVKGAS(0.003)FVT(0.001)STNPR ; 95.523 0.00015829 246580000 2071.37 2375.97 1726.12 1800.08 2430.51 2277.12 2336.4 1855.8 2233.66 2026.28 TRUE FALSE FALSE 1828.567149 2449.170819 1819.439268 1873.495043 2251.21612 2233.68773 2426.515731 2067.056771 2141.587589 2014.227596 0.907825487 1.21593549 0.903293784 0.930130759 1.117657271 1.108954983 1.204687958 1.026228006 1.06323019 1 10.97601099 -5.750707563 24.35507111 0.971003504 1.120444895 0.194543269 0.097825558 129.1936252 293192.5258 0.013509895 0.026788965 1.78E-06 5.750707563 0.14944139 NTFTAWS(ph)DEESDYEIDDR ddPTM_HeLa_CUDC101_4h_R1 2 NTFTAWSDEESDYEIDDR 18 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 NTFTAWS(1)DEESDYEIDDR;NTFTAWS(1)DEESDYEIDDR ; 212.41 3.57E-24 50470000 5101 4341 3398.9 3657.9 3510.9 3343.9 3218.3 1732.49 4726.3 5032.7 TRUE FALSE FALSE 4503.068513 4474.741065 3582.654815 3807.084973 3251.907902 3280.120679 3342.430909 1929.709659 4531.479914 5002.765277 0.900115889 0.894453531 0.716134901 0.760996122 0.650022082 0.655661519 0.668116676 0.385728602 0.905795028 1 12.28851005 -4.154914667 0.232808202 1.02664478 9.92E-19 0.851277862 0.065627485 2.508937609 0.10834393 0.047626641 0.755033917 7.00E-05 4.154914667 -1.02664478 down MS(ph)VDAVEIETLRK ddPTM_HeLa_CUDC101_4h_R1 2 MSVDAVEIETLRK 13 1 P78347-2;P78347-4;P78347-3;P78347;A0A494C1K3;P78347-5 P78347-2 GTF2I General transcription factor II-I 1 0 MS(1)VDAVEIETLRK;MS(1)VDAVEIETLRK ; 127.66 0.00074964 12997700 3308 3121.6 3151.1 3164.3 3662.3 3776.5 3453.2 2730.5 4520.2 3565.6 TRUE FALSE FALSE 2920.241255 3217.772796 3321.457998 3293.353831 3392.139425 3704.469555 3586.391081 3041.329083 4333.875443 3544.391653 0.823904788 0.907849107 0.937102421 0.929173227 0.957044186 1.045163717 1.011849545 0.858068007 1.222741691 1 11.79132231 -5.750556914 2.95700522 0.915983546 0.978640407 0 0.114183527 0.443287734 7.963221446 0.011670418 0.023973094 1.78E-06 5.750556914 0.062656861 TAHNSEADLEES(ph)FNEHELEPSSPK ddPTM_HeLa_CUDC101_4h_R1 1 TAHNSEADLEESFNEHELEPSSPK 24 0 Q8IWS0-5;Q8IWS0 Q8IWS0-5 PHF6 PHD finger protein 6 1 0 TAHNSEADLEES(0.55)FNEHELEPS(0.027)S(0.423)PK 74.742 0.00039742 48333000 5325.9 4360.9 4591 4501.9 6102.7 5415.3 5019.6 4842.6 5381.4 5658.9 TRUE FALSE FALSE 4701.606076 4495.25416 4839.203347 4685.506941 5652.515979 5312.012175 5213.207653 5393.86201 5159.576414 5625.240611 0.835805328 0.799122112 0.860266019 0.832943382 1.004848747 0.944317327 0.92675283 0.958867786 0.917218795 1 12.45769909 -5.750369204 24.99994045 0.899601634 0.955387856 0.280234952 0.05826486 422.4844221 954095.6566 0.011821593 0.023469833 1.78E-06 5.750369204 0.055786222 QPASAQSTPSTTPHS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 2 QPASAQSTPSTTPHSSPK 18 0 A0A087WT18;Q96A73-2;Q96A73 A0A087WT18 KIAA1191 Putative monooxygenase p33MONOX 1 0 QPASAQSTPSTTPHS(0.5)S(0.5)PK;QPASAQSTPSTT(0.008)PHS(0.496)S(0.496)PK ; 181.51 3.30E-11 17971000 6048.2 4037.7 3217.6 3350.9 10007.6 8748.4 7908.5 6972.5 5939 6200.3 TRUE FALSE FALSE 5339.239164 4162.096751 3391.553189 3487.564186 9269.359286 8581.538846 8213.533494 7766.221216 5694.191906 6163.42034 0.866278603 0.675290102 0.550271278 0.56584883 1.50393106 1.392333862 1.332625886 1.260050554 0.923868825 1 12.58951547 -5.75027846 24.99999423 0.85818347 1.370841767 0.755656209 0.164353807 112.4631557 251911.0788 0.02889856 0.057371222 1.78E-06 5.75027846 0.512658298 YGGDS(ph)DHPS(ph)DGETSVQPMMTK ddPTM_HeLa_CUDC101_4h_R1 1 YGGDSDHPSDGETSVQPMMTK 21 0 Q8WYQ5-3;Q8WYQ5;Q8WYQ5-2 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 2 0 Y(0.015)GGDS(0.985)DHPS(0.51)DGET(0.277)S(0.212)VQPMMT(0.001)K 51.264 0.0031544 0 2661.1 2149.4 2145 1901.3 2899.1 2255.2 2338.4 2204.6 2510 2297.9 TRUE FALSE FALSE 2349.169892 2215.620466 2260.965188 1978.843232 2685.239169 2212.185817 2428.592871 2455.562753 2406.536738 2284.231989 1.028428769 0.96996298 0.989814169 0.866305718 1.175554489 0.968459346 1.063198871 1.075005851 1.053543051 1 11.15749346 -5.750269274 24.99999947 0.998952984 1.062736647 0.26889435 0.066434999 278.3253053 622920.2522 0.008917278 0.017701649 1.78E-06 5.750269274 0.063783663 RRSQFFEQGS(ph)SDSVVPDLPVPTISAPSR ddPTM_HeLa_CUDC101_4h_R1 1 RRSQFFEQGSSDSVVPDLPVPTISAPSR 28 2 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 E9PMS6 LMO7 LIM domain only protein 7 1 0 RRS(0.233)QFFEQGS(0.314)S(0.314)DS(0.138)VVPDLPVPTISAPSR 50.14 0.021619 18435000 473.12 602.09 348.42 425.9 713.59 896.93 552.44 506.06 384 444.29 TRUE FALSE FALSE 417.6615908 620.6396792 367.2566391 443.2700429 660.9498874 879.8225546 573.7477959 563.6678248 368.1713575 441.6473433 0.94569026 1.405283398 0.831560848 1.003674198 1.496555787 1.992138225 1.299108451 1.276284876 0.833631999 1 8.786751023 -5.750267037 6.285350143 0.999064109 1.537635049 0.531384138 0.235719438 0.087097378 13.22618903 0.032918428 0.064067784 1.78E-06 5.750267037 0.53857094 LS(ph)VYRKY(ph)DLKGS(ph)TVAR ddPTM_HeLa_CUDC101_4h_R1 1 LSVYRKYDLKGSTVAR 16 3 S4R320;P48426-2;P48426 S4R320 PIP4K2A Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha 3 0 LS(0.505)VY(0.497)RKY(0.997)DLKGS(0.5)T(0.5)VAR 45.33 0.0032615 0 1017.4 1020.8 936.76 1012.4 877 798.62 816.25 915.69 943.81 1015.1 TRUE FALSE FALSE 898.1419143 1052.249638 987.4040791 1053.690048 812.3054572 783.3876541 847.7330359 1019.928448 904.9057523 1009.06214 0.890075922 1.042799642 0.978536445 1.044227116 0.805010341 0.776352241 0.840119753 1.010768721 0.896779015 1 9.978799306 -5.750255746 24.99885582 0.963320675 0.850944652 0.357032329 0.075873031 204.1044127 456232.875 0.011481395 0.022794045 1.78E-06 5.750255746 -0.112376023 DSLS(ph)PVLHPSDLILTR ddPTM_HeLa_CUDC101_4h_R1 3 DSLSPVLHPSDLILTR 16 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 0 DS(0.25)LS(0.75)PVLHPSDLILTR;DS(0.009)LS(0.985)PVLHPS(0.006)DLILTR;DS(0.207)LS(0.793)PVLHPSDLILTR ;; 125.86 0.00050837 43814600 7760.6 5301.6 3787.71 4322.1 8468.6 6946.9 6413.2 5508.9 6718.7 5540 TRUE FALSE FALSE 6850.914232 5464.936012 3992.48506 4498.37392 7843.88825 6814.399457 6660.559272 6136.010908 6441.752342 5507.047834 1.244026644 0.992353104 0.724977371 0.816839449 1.424336321 1.23739609 1.209460944 1.11421057 1.16972878 1 12.42706342 -5.750184371 24.99803508 1.056506651 1.243076273 0.323303911 0.165308115 302.8686942 672684.68 0.028192703 0.055981519 1.78E-06 5.750184371 0.186569622 QQEELDALK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 QQEELDALKK 10 1 O95347-2;O95347 O95347-2 SMC2 Structural maintenance of chromosomes protein 2 0 1 QQEELDALK(1)K 146.11 0.0004194 506840 575.98 257.71 44.711 151.83 545.68 418.41 457.29 401.11 362.28 294.83 FALSE TRUE FALSE 508.4644975 265.6497396 47.1282119 158.0222837 505.4262735 410.4295264 474.9278285 446.7707411 347.3466651 293.076338 1.734921696 0.906418244 0.160805243 0.539184721 1.724555032 1.400418502 1.620491888 1.524417645 1.185174714 1 8.195132684 QQEGFK(ac)GTFPDAR ddPTM_HeLa_CUDC101_4h_R1 2 QQEGFKGTFPDAR 13 1 Q15233;Q15233-2 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 1 ; QQEGFK(1)GTFPDAR;QQEGFK(1)GTFPDAR 188.48 1.84E-08 2546800 1252.72 1067.15 1201.97 1124.94 1040.03 1078.24 904.51 841.95 1181.31 1055.41 FALSE TRUE FALSE 1105.878061 1100.027627 1266.952134 1170.819916 963.3090589 1057.674368 939.3972537 937.7941847 1132.615902 1049.132374 1.054088204 1.048511755 1.207618948 1.115988739 0.918195914 1.00814196 0.895403932 0.893875938 1.079573874 1 10.03498101 -5.117388034 1.425457353 1.045850307 0.893827369 0.475634269 0.069542608 0.387943738 1.411551161 0.011360653 0.052651342 7.63E-06 5.117388034 -0.152022938 TSLAGDTSNSSS(ph)PASTGAK ddPTM_HeLa_CUDC101_4h_R1 1 TSLAGDTSNSSSPASTGAK 19 0 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;H0Y390;Q9UPN3-5;H0Y314;H3BPE1;H3BQK9;H0Y6T5;H0Y4F5 A0A590UJG2;H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 TSLAGDTSNS(0.007)S(0.08)S(0.91)PAS(0.002)TGAK 288.53 1.99E-104 25454000 3212 2627 2488.8 2400.2 3234.8 2436.8 2474.8 773.86 2687.3 2839.5 TRUE FALSE FALSE 2835.494229 2707.934756 2623.352056 2498.090531 2996.175249 2390.3221 2570.253865 861.9530944 2576.528357 2822.610528 1.004564463 0.959372443 0.929406317 0.885028418 1.06149085 0.846848007 0.910594586 0.305374435 0.912817525 1 11.46281436 -4.154656538 2.116227184 0.982291429 1.97E-19 0.891455188 0.066294975 0.200471082 0.771182033 0.008643575 0.41171018 7.00E-05 4.154656538 -0.982291429 down SQS(ph)PHYFR ddPTM_HeLa_CUDC101_4h_R1 2 SQSPHYFR 8 0 Q9UKJ3;Q9UKJ3-2 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 1 0 S(0.001)QS(0.999)PHYFR;S(0.009)QS(0.991)PHYFR ; 99.788 0.01221 166682000 6980.2 4221.1 4129.1 4035 7424.1 6004.5 6249.2 4807 6280 4868 TRUE FALSE FALSE 6161.991537 4351.147088 4352.331636 4199.564741 6876.438934 5889.974167 6490.233737 5354.209449 6021.135742 4839.04492 1.273390026 0.899174767 0.899419557 0.867849919 1.421032259 1.217176998 1.341222048 1.10645996 1.244281845 1 12.24050662 -5.750164743 24.99647299 1.077478064 1.272576586 0.347056789 0.15396883 257.7660411 571477.5501 0.025148096 0.049936479 1.78E-06 5.750164743 0.195098522 IADPEHDHTGFLTEY(ph)VATR ddPTM_HeLa_CUDC101_4h_R1 2 IADPEHDHTGFLTEYVATR 19 0 B3KR49;E9PJF0;E9PQW4;P27361-2;P27361-3;P27361 B3KR49 MAPK3 Mitogen-activated protein kinase;Mitogen-activated protein kinase 3 1 0 IADPEHDHTGFLTEY(1)VATR;IADPEHDHTGFLT(0.226)EY(0.742)VAT(0.032)R ; 185.63 9.79E-12 32100000 4988.2 4601.3 4182 4963.2 8717.1 8900.1 8362.5 7494 4932.6 5271.3 TRUE FALSE FALSE 4403.490758 4743.060599 4408.09157 5165.620749 8074.0569 8730.345421 8685.044426 8347.086668 4729.27614 5239.946073 0.84036948 0.905173552 0.841247507 0.985815632 1.540866411 1.666113601 1.657468284 1.592971865 0.902542903 1 12.35533625 -5.749780022 3.719741724 0.914669058 1.636211851 0.981985938 0.046803211 0.028362056 0.84429207 0.009874645 0.019750635 1.78E-06 5.749780022 0.721542793 SLS(ph)LGDK ddPTM_HeLa_CUDC101_4h_R1 1 SLSLGDK 7 0 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-6 SYNRG Synergin gamma 1 0 S(0.001)LS(0.999)LGDK 92.838 0.030193 19661000 4682.2 4300.8 3778.9 4212 5160.2 4889.4 4541.5 4361.6 5269.5 4958.1 TRUE FALSE FALSE 4133.359614 4433.30255 3983.198765 4383.783566 4779.542327 4796.142841 4716.667176 4858.106914 5052.28898 4928.609001 0.838646282 0.899503805 0.808179096 0.889456552 0.969754818 0.973123013 0.956997639 0.985695338 1.025094297 1 12.26696482 -5.74973418 24.04675779 0.908223633 0.97048811 0.191992469 0.06146588 212.0006891 435521.5381 0.010290174 0.020432422 1.78E-06 5.74973418 0.062264477 QQHVIETLIGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 QQHVIETLIGKK 12 1 E7ENZ3;B7ZAR1;E9PCA1;P48643-2;P48643 E7ENZ3 CCT5 T-complex protein 1 subunit epsilon 0 1 ; QQHVIETLIGK(1)K;QQHVIETLIGK(1)K 103.14 0.0076192 1619240 2744.44 1420.69 1126.93 1090.58 2679.21 2276.04 2442.29 2343.79 2531.06 1895.61 FALSE TRUE FALSE 2422.740904 1464.459775 1187.855245 1135.058566 2481.570016 2232.628329 2536.489943 2610.59758 2426.728636 1884.334827 1.285727392 0.777175985 0.630384381 0.602365646 1.316947487 1.184836313 1.346093012 1.385421286 1.287843647 1 10.87983962 NSQEDS(ph)EDS(ph)EDKDVK ddPTM_HeLa_CUDC101_4h_R1 3 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 NS(0.422)QEDS(0.579)EDS(0.999)EDKDVK;NS(0.001)QEDS(0.999)EDS(1)EDKDVK;NS(0.004)QEDS(0.996)EDS(1)EDKDVK ;; 156 0.00121 1800480000 23086.1 39663.2 21941.8 26612.9 22987.8 23006 21705.5 20652.5 25011.8 27616.7 TRUE FALSE FALSE 20379.98235 40885.17618 23128.04008 27698.28909 21292.03579 22567.19888 22542.68841 23003.49712 23980.80302 27452.43464 0.742374315 1.489309663 0.842476829 1.008955652 0.775597359 0.822047267 0.821154433 0.837940147 0.873540119 1 14.74464648 -5.749689769 24.85145267 0.931598973 0.815244233 0.127240522 0.192611462 483.7584017 1023183.952 0.029651831 0.058911371 1.78E-06 5.749689769 -0.11635474 QQLLIGAYAK ddPTM_HeLa_CUDC101_4h_R1 2 QQLLIGAYAK 10 0 Q99832-4;Q99832-3;Q99832;Q99832-2 Q99832-4 CCT7 T-complex protein 1 subunit eta 0 0 ; ; 157.91 0.0049426 1068400 1849.04 1533.68 805.28 1265.72 1479.9 1385 1024.54 1104.34 840.28 572.53 FALSE FALSE TRUE 1632.298334 1580.930863 848.8158726 1317.341533 1370.730725 1358.583433 1064.056851 1230.053602 805.6433027 569.1245661 2.868086235 2.777829244 1.491441282 2.314680495 2.408489823 2.387146002 1.869637887 2.161308218 1.415583425 1 9.152600644 SRS(ph)FTSSYAISAANHVK ddPTM_HeLa_CUDC101_4h_R1 1 SRSFTSSYAISAANHVK 17 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 S(0.065)RS(0.764)FT(0.124)S(0.036)S(0.01)YAISAANHVK 165.9 7.56E-06 26436000 1796.9 1118.7 884.16 1108.6 1985.8 1756.7 1731.6 1379.6 1509.6 1366.6 TRUE FALSE FALSE 1586.270106 1153.165821 931.960364 1153.8135 1839.31149 1723.193874 1798.388392 1536.648087 1447.373649 1358.471402 1.167687522 0.848870148 0.686036057 0.849346919 1.353956724 1.268480051 1.323832352 1.131159688 1.065442855 1 10.40776848 -5.749631959 24.99384668 1.014709182 1.273185654 0.512258164 0.147766246 203.5451742 430859.702 0.025762987 0.051195446 1.78E-06 5.749631959 0.258476472 KLSS(ph)SDAPAQDTGSSAAAVETDASR ddPTM_HeLa_CUDC101_4h_R1 1 KLSSSDAPAQDTGSSAAAVETDASR 25 1 H0YHT2;A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-3;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;H0YIM6 H0YHT2 KIF21A Kinesin-like protein KIF21A 1 0 KLS(0.328)S(0.48)S(0.191)DAPAQDT(0.001)GSSAAAVETDASR 73.781 0.00020061 12408000 1902.6 1575.4 2048.9 2061.8 1562.8 1901.3 1377.2 1905.7 1880.6 1938.4 TRUE FALSE FALSE 1679.580112 1623.936207 2159.669732 2145.889116 1447.515358 1865.03587 1430.319065 2122.637185 1803.080872 1926.870311 0.871662251 0.842784383 1.120817379 1.113665566 0.751226146 0.967909392 0.742301678 1.101598366 0.935756217 1 10.91204376 -5.749479142 24.99930372 0.955944267 0.885665636 0.085968967 0.12897072 543.3183854 1135637.891 0.018580414 0.036925866 1.78E-06 5.749479142 -0.070278631 DS(ph)QSPDSAWR ddPTM_HeLa_CUDC101_4h_R1 1 DSQSPDSAWR 10 0 O94875-12;O94875-11;O94875-9;O94875-8;C9J4Z9;C9IZT7;C9JWC3;C9JN77;C9JI79;C9J372;C9JZ60;C9JDX2;C9JBB0;C9JFS9;C9JC90;C9J620;C9JM25 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 DS(0.426)QS(0.269)PDS(0.305)AWR 132.14 0.0020555 36680000 3655.6 3842.2 3208.8 3592.4 3265.4 3027.9 2896.1 2985.2 3695.8 3769.7 TRUE FALSE FALSE 3227.09611 3960.573628 3382.277434 3738.9136 3024.517948 2970.147852 3007.803547 3325.023101 3543.45756 3747.277657 0.861184146 1.056920247 0.902595896 0.997767964 0.807124058 0.792614833 0.802663646 0.887316982 0.945608488 1 11.87162716 -5.749471654 24.97498913 0.944430898 0.818888327 0.572426557 0.057482716 157.0355579 327709.3055 0.009701807 0.019282044 1.78E-06 5.749471654 -0.125542571 QLVYVEQAGSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 QLVYVEQAGSSPK 13 0 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 0 QLVYVEQAGS(0.195)S(0.805)PK;QLVYVEQAGS(0.078)S(0.922)PK ; 249.36 7.52E-56 61905000 10096.4 8722.2 8131.5 8404.7 7646.3 7001.5 7519.9 6783.2 8086.3 7256.4 TRUE FALSE FALSE 8912.915297 8990.920644 8571.113486 8747.479994 7082.247683 6867.958053 7809.945062 7555.372069 7752.979291 7213.23861 1.235632949 1.246447141 1.188247603 1.212697994 0.981840206 0.952132381 1.082723792 1.047431324 1.074826401 1 12.81643143 -5.749437671 24.99948194 1.137880545 1.016231363 0.42489426 0.07946681 269.9084897 562214.2819 0.015957773 0.031720564 1.78E-06 5.749437671 -0.121649181 VYS(ph)SSEFLAVQPTPTFAER ddPTM_HeLa_CUDC101_4h_R1 1 VYSSSEFLAVQPTPTFAER 19 0 O60307;V9GYV0 O60307 MAST3 Microtubule-associated serine/threonine-protein kinase 3 1 0 VYS(0.919)S(0.08)S(0.001)EFLAVQPTPTFAER 166.67 3.60E-06 8787300 682.96 675.69 524.97 479.72 779.02 734.55 481.02 552.85 493.69 601.27 TRUE FALSE FALSE 602.9044641 696.507208 553.3514661 499.2850551 721.5532466 720.5396826 499.5731025 615.7842093 473.3398892 597.6936193 1.008718254 1.165324818 0.925811232 0.835352828 1.207229295 1.205533503 0.835834759 1.03026733 0.791944023 1 9.223262331 -5.749405303 24.99945123 1.000573555 1.062711549 0.087477367 0.140510663 597.3875876 1240997.201 0.018009181 0.035794346 1.78E-06 5.749405303 0.062137994 EPGPIAPSTNSS(ph)PVLK ddPTM_HeLa_CUDC101_4h_R1 1 EPGPIAPSTNSSPVLK 16 0 Q14674;Q14674-2 Q14674 ESPL1 Separin 1 0 EPGPIAPS(0.006)T(0.006)NS(0.493)S(0.494)PVLK 181.51 9.17E-17 0 1755 1485.2 1350.3 1612.1 1434.2 1572.2 1281.5 1349.6 1432.8 1547 TRUE FALSE FALSE 1549.28156 1530.957252 1423.301302 1677.848406 1328.401923 1542.212904 1330.927884 1503.233009 1373.739378 1537.798375 1.007467289 0.995551352 0.925544808 1.091071777 0.863833611 1.002870681 0.865476194 0.977522823 0.893315665 1 10.58665064 -5.749350866 24.99983974 1.001916905 0.928389796 0.134202785 0.064604664 193.8383655 400867.8761 0.006901453 0.013717745 1.78E-06 5.749350866 -0.073527109 PAAAAAAGSAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 PAAAAAAGSASPR 13 0 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 PAAAAAAGSAS(1)PR 171.26 4.42E-07 5477800 1193.2 1049.1 1096.7 1272.7 868.07 901.5 880.38 805.04 996.83 1251.5 TRUE FALSE FALSE 1053.334905 1081.421528 1155.990919 1324.606207 804.0342055 884.3053895 914.3365515 896.6824995 955.7402455 1244.056022 0.846694109 0.869270763 0.929211304 1.064748036 0.646300642 0.710824411 0.734964129 0.720773408 0.768245343 1 10.28083574 -5.74927941 24.99976522 0.929763886 0.706026851 0.617264323 0.080279224 102.0940134 209894.3664 0.011043642 0.021957374 1.78E-06 5.74927941 -0.223737034 SETAPAETATPAPVEKS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 4 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 1 0 SETAPAETAT(0.001)PAPVEKS(0.999)PAK;SETAPAETAT(0.001)PAPVEKS(0.999)PAK;SETAPAETAT(0.001)PAPVEKS(0.999)PAK;SETAPAETATPAPVEKS(1)PAK ;;; 168.86 5.21E-08 428298000 10451.9 9560.1 13883.7 11504.5 8343.4 6940 6383.6 10313.9 7971.3 11537 TRUE FALSE FALSE 9226.744126 9854.635349 14634.29482 11973.70324 7727.924004 6807.631063 6629.81759 11487.99269 7642.71964 11468.37741 0.804537887 0.859287674 1.276056263 1.044062539 0.673846328 0.593600195 0.578095519 1.001710379 0.666416823 1 13.48537367 -5.749224535 24.98568072 0.940734277 0.693818004 0.266443023 0.185928749 213.3494365 436407.2577 0.025579524 0.050859166 1.78E-06 5.749224535 -0.246916274 SSSQIPEGFGLTS(ph)GGSNYSLAR ddPTM_HeLa_CUDC101_4h_R1 1 SSSQIPEGFGLTSGGSNYSLAR 22 0 A2RRE0;Q9Y4E6-2;Q9Y4E6 A2RRE0 WDR7 WD repeat-containing protein 7 1 0 SSSQIPEGFGLT(0.228)S(0.751)GGS(0.021)NYSLAR 125.47 4.37E-07 23760000 1774.6 1188.6 1383.6 1581.8 2202.6 2256.4 2283.3 1973.7 1550.5 1309.3 TRUE FALSE FALSE 1566.584078 1225.219357 1458.401601 1646.312641 2040.118586 2213.362929 2371.367646 2198.37803 1486.587734 1301.512225 1.203664512 0.941381366 1.120543912 1.264922917 1.567498596 1.700608635 1.822009505 1.689095183 1.142200361 1 10.34597315 -5.749220612 1.687392116 1.08495663 1.753501603 0.938635997 0.075207141 0.072026722 0.415141658 0.014225792 0.033612318 1.78E-06 5.749220612 0.668544974 ASEIDQVVPAAQS(ph)SPINCEK ddPTM_HeLa_CUDC101_4h_R1 1 ASEIDQVVPAAQSSPINCEK 20 0 O94782;C9JWX4;C9JC88 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 ASEIDQVVPAAQS(0.592)S(0.408)PINCEK 94.019 0.00087043 11267000 3597.4 2449.8 2578.5 2803.2 2691 2536.6 2692.4 2040.1 2475.6 2491.4 TRUE FALSE FALSE 3175.718225 2525.275434 2717.90151 2917.526612 2492.490291 2488.218581 2796.24677 2272.336738 2373.55472 2476.581042 1.282299336 1.019661942 1.097440973 1.17804609 1.006423876 1.004699034 1.129075416 0.917529731 0.958399778 1 11.27413412 -5.749016987 24.87466444 1.126748708 1.021925593 0.043306951 0.103187784 317.1223999 635003.1122 0.016931213 0.033668518 1.78E-06 5.749016987 -0.104823115 QQQEK(ac)EMK ddPTM_HeLa_CUDC101_4h_R1 2 QQQEKEMK 8 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 1 ; QQQEK(1)EMK;QQQEK(1)EMK 182.98 0.00022312 5105900 2012.29 1389.31 2094.32 2456.6 2082.34 1853.24 2062.3 1516.72 2282.6 2373.4 FALSE TRUE FALSE 1776.412417 1432.112994 2207.545274 2556.790766 1928.729927 1817.892535 2141.843602 1689.377274 2188.510262 2359.282911 0.752945909 0.607011981 0.935684849 1.083715206 0.817506844 0.770527573 0.907836695 0.716055402 0.927616714 1 11.20413271 -9.449066717 1.231929477 0.998270691 0.822561127 0.158524089 0.125633961 0.589846637 1.625587081 0.085300792 0.022096559 3.56E-10 9.449066717 -0.175709564 S(ph)LGPGAGPR ddPTM_HeLa_CUDC101_4h_R1 2 SLGPGAGPR 9 0 H3BUV2;P78549-3;P78549-2;P78549 H3BUV2 NTHL1 Endonuclease III-like protein 1 1 0 S(1)LGPGAGPR;S(1)LGPGAGPR ; 99.788 0.017941 45986000 3175.6 2995.3 2458.5 2823.5 2344.22 2080.88 1864.15 2299.46 2463.7 2644.1 TRUE FALSE FALSE 2803.360982 3087.581643 2591.413947 2938.654534 2171.291561 2041.190681 1936.05089 2561.221232 2362.145243 2628.372776 1.066576632 1.174712229 0.985938513 1.118050895 0.826097265 0.776598624 0.736596767 0.974451286 0.898710132 1 11.35995419 -5.748455799 24.64832409 1.045731976 0.818173272 0.565987324 0.09080271 87.15933877 165463.9878 0.011087619 0.022061636 1.78E-06 5.748455799 -0.227558704 SCDEPLTPPPHS(ph)PTSMLQLIHDPVSPR ddPTM_HeLa_CUDC101_4h_R1 2 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7-3;Q9Y2K7;Q9Y2K7-4;Q9Y2K7-5;Q9Y2K7-2 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 S(0.001)CDEPLT(0.133)PPPHS(0.606)PT(0.13)S(0.13)MLQLIHDPVSPR;SCDEPLTPPPHS(0.866)PT(0.095)S(0.039)MLQLIHDPVSPR ; 77.689 6.40E-05 27897000 3819.3 2907 2190.15 2563.4 4109.1 3875.9 3219.8 3107.4 3500.7 3034.1 TRUE FALSE FALSE 3371.607444 2996.561224 2308.556134 2667.946532 3805.979879 3801.973665 3343.988765 3461.133855 3356.399664 3016.053038 1.117887319 0.993537311 0.765422923 0.884582101 1.261907477 1.26057918 1.108730093 1.14757062 1.11284504 1 11.55844608 -5.748298247 24.99353726 1.016907472 1.193262248 0.463003417 0.109299901 216.9887029 412695.2447 0.018047843 0.035925744 1.79E-06 5.748298247 0.176354775 SKEGHSLEMENENLVENGADS(ph)DEDDNSFLK ddPTM_HeLa_CUDC101_4h_R1 1 SKEGHSLEMENENLVENGADSDEDDNSFLK 30 1 Q9UHB6-4;Q9UHB6-5;Q9UHB6;F8VQE1;Q9UHB6-2;F8VS07;Q9UHB6-3 Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 1 0 SKEGHSLEMENENLVENGADS(0.999)DEDDNS(0.001)FLK 119.41 5.96E-14 67082000 5528.7 3277.7 3245 3292.5 6389.5 5273.1 5147 4626.2 5861.3 4410.3 TRUE FALSE FALSE 4880.634167 3378.682052 3420.434516 3426.782381 5918.159315 5172.524403 5345.521514 5152.827908 5619.694733 4384.067339 1.113266241 0.770672937 0.780196619 0.781644559 1.349924364 1.17984602 1.219306434 1.175353276 1.281844985 1 12.09805424 -5.748042421 24.99427419 0.991400076 1.226603036 0.405782462 0.160213185 206.37554 385025.7857 0.022737989 0.045269275 1.79E-06 5.748042421 0.235202961 T(ph)HSTSSSLGSGESPFSR ddPTM_HeLa_CUDC101_4h_R1 1 THSTSSSLGSGESPFSR 17 0 F8WBF9;Q5TH30;Q9UGV2-3;Q9UGV2-2;Q9UGV2 F8WBF9 NDRG3 Protein NDRG3 1 0 T(0.571)HS(0.388)T(0.013)S(0.026)S(0.002)SLGSGESPFSR 135.57 8.14E-05 0 920.02 464.88 650.09 517.96 1306.6 1105.6 862.04 793.23 886.97 953.53 TRUE FALSE FALSE 812.1766503 479.2024018 685.2358318 539.0846476 1210.214721 1084.512522 895.2891716 883.5280969 850.4087212 947.8583612 0.856854445 0.505563301 0.722930619 0.568739666 1.27678857 1.144171499 0.944538982 0.932130931 0.89718966 1 9.888527683 -5.747926616 24.99954055 0.855074449 1.070114225 0.359127873 0.180940732 302.7864579 560172.3005 0.030393538 0.060516832 1.79E-06 5.747926616 0.215039776 RVS(ph)STWTTTTSATGLPTLEPAPVR ddPTM_HeLa_CUDC101_4h_R1 1 RVSSTWTTTTSATGLPTLEPAPVR 24 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 RVS(0.439)S(0.15)T(0.15)WT(0.195)T(0.052)T(0.011)T(0.003)S(0.001)ATGLPTLEPAPVR 75.758 0.00022269 38264000 451.74 523.1 357.06 352.58 542.03 659.95 310.64 348.38 292.11 433.06 TRUE FALSE FALSE 398.787722 539.216091 376.3637436 366.9597364 502.0455268 647.3625533 322.6214889 388.038171 280.0691022 430.4841399 0.9263703 1.25258062 0.874280162 0.852434974 1.166234665 1.50380117 0.749438734 0.90139946 0.650590989 1 8.749816276 -5.747921253 24.99954576 0.973737772 1.086847261 0.074353225 0.23197093 572.4374082 1058621.983 0.030088378 0.059909389 1.79E-06 5.747921253 0.11310949 DTS(ph)PSSGSAVSSSK ddPTM_HeLa_CUDC101_4h_R1 6 DTSPSSGSAVSSSK 14 0 Q8NEY8;F8W6A0;F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;F8WF16;B7Z8L1;Q8NEY8-5;Q8NEY8-6;Q8NEY8-7 Q8NEY8 PPHLN1 Periphilin-1 1 0 DT(0.036)S(0.963)PSSGSAVSSSK;DT(0.051)S(0.931)PS(0.001)S(0.013)GS(0.004)AVSSSK;DT(0.063)S(0.937)PSSGSAVSSSK;DT(0.09)S(0.909)PSSGSAVSSSK;DT(0.035)S(0.791)PS(0.025)S(0.14)GS(0.009)AVSSSK;DT(0.302)S(0.696)PS(0.001)SGSAVSSSK ;;;;; 276.32 3.50E-86 2657091000 43138.44 51572.2 38665.18 39912.6 40183.31 37587.2 37772.9 32551.78 38934.1 39507.7 TRUE FALSE FALSE 38081.81746 53161.07835 40755.53659 41540.40834 37219.06728 36870.28678 39229.81341 36257.34306 37329.21992 39272.70644 0.969676422 1.353639287 1.037757269 1.05774244 0.947708234 0.938827245 0.998907816 0.923219873 0.950513048 1 15.2612394 -5.747773467 24.72247981 1.02485394 0.954551732 0.144766046 0.110353996 451.4268637 816653.4806 0.016863562 0.033573482 1.79E-06 5.747773467 -0.070302208 LS(ph)PACS(ph)GT(ph)S(ph)TPRGNVLASHSPMSPESIK ddPTM_HeLa_CUDC101_4h_R1 1 LSPACSGTSTPRGNVLASHSPMSPESIK 28 1 Q8IZD9 Q8IZD9 DOCK3 Dedicator of cytokinesis protein 3 4 0 LS(0.75)PACS(0.75)GT(0.75)S(0.75)T(0.75)PRGNVLAS(0.1)HS(0.073)PMS(0.073)PES(0.002)IK 40.937 0.033985 9461800 511.52 574.58 701.88 409.59 879.04 743.3 488.22 603.59 626.67 736.61 TRUE FALSE FALSE 451.560401 592.2821288 739.8257559 426.2948506 814.1949705 729.1227909 507.0508089 672.3002458 600.8383974 732.228611 0.616693194 0.808875971 1.010375373 0.582188191 1.111940941 0.995758401 0.692476095 0.918156209 0.820561213 1 9.516150336 -5.747753664 24.99637305 0.815084297 0.917373405 0.119438381 0.161425169 581.7246516 1062488.787 0.027641254 0.055050308 1.79E-06 5.747753664 0.102289109 S(ph)YGSRSPFEHSVEHK ddPTM_HeLa_CUDC101_4h_R1 2 SYGSRSPFEHSVEHK 15 1 O14646-2 O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 S(0.347)Y(0.301)GS(0.347)RS(0.006)PFEHSVEHK;S(0.334)Y(0.28)GS(0.334)RS(0.053)PFEHSVEHK ; 63.894 0.025662 24487000 6232.8 3922.2 4511.8 4407.6 8713.2 7691.7 6835.1 6312.4 6743.2 7044.5 TRUE FALSE FALSE 5502.200632 4043.038333 4755.721555 4587.360979 8070.444595 7544.993638 7098.732097 7030.9781 6465.242442 7002.599001 0.785736929 0.577362538 0.67913664 0.655094056 1.152492752 1.07745619 1.013728202 1.004052652 0.923263269 1 12.77367476 -5.746948927 24.9999839 0.836136314 1.059598132 0.503821359 0.132479957 237.3698918 409525.4003 0.024257783 0.048342949 1.79E-06 5.746948927 0.223461818 ENPPVEDS(ph)SDEDDKRNQGNLYDK ddPTM_HeLa_CUDC101_4h_R1 1 ENPPVEDSSDEDDKRNQGNLYDK 23 2 Q8TCJ2 Q8TCJ2 STT3B Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B 1 0 ENPPVEDS(0.5)S(0.5)DEDDKRNQGNLYDK 62.108 0.003489 11165000 1998.2 1677.9 1625.9 2119.1 1449.8 1441.4 1410.3 1942.7 1598.3 1967.1 TRUE FALSE FALSE 1763.974025 1729.59411 1713.801072 2205.526058 1342.851142 1413.907697 1464.695743 2163.849115 1532.417398 1955.399602 0.902104114 0.884522073 0.876445444 1.127915775 0.68674001 0.723078646 0.749051878 1.106602003 0.783685031 1 10.93324775 -5.746774627 24.99909314 0.951364422 0.804896343 0.125061265 0.137462571 267.4097179 455852.2623 0.017881005 0.035639382 1.79E-06 5.746774627 -0.146468079 SEHS(ph)LFQAK ddPTM_HeLa_CUDC101_4h_R1 2 SEHSLFQAK 9 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(0.185)EHS(0.815)LFQAK;S(0.23)EHS(0.77)LFQAK ; 84.31 0.002907 6427400 17457.7 14176.9 14015.5 13691.8 13175.4 12986.5 11825.7 9582.8 13380 13143.7 TRUE FALSE FALSE 15411.33487 14613.67349 14773.22032 14250.21079 12203.47699 12738.80415 12281.82121 10673.66722 12828.47074 13065.52069 1.179542342 1.118491473 1.130702762 1.090673011 0.934021482 0.97499399 0.940017739 0.816933934 0.981856831 1 13.673477 -5.74669882 4.984705171 1.094102681 0.920356142 0.597242657 0.066923549 0.112139815 7.384147081 0.011436232 0.022479301 1.79E-06 5.74669882 -0.173746539 VEENPDADS(ph)DFDAKS(ph)SADDEIEETR ddPTM_HeLa_CUDC101_4h_R1 1 VEENPDADSDFDAKSSADDEIEETR 25 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 2 0 VEENPDADS(0.973)DFDAKS(0.762)S(0.265)ADDEIEETR 83.479 4.52E-05 14185000 1857.2 1600.3 1573.9 1633.4 1479.1 1397.2 1192.1 1345.5 1353.9 1558.7 TRUE FALSE FALSE 1639.501831 1649.603346 1658.989795 1700.017112 1369.98974 1370.550738 1238.079696 1498.666281 1298.091669 1549.428783 1.058133068 1.064652577 1.070710582 1.097189578 0.884190196 0.884552264 0.799055568 0.967237925 0.837787243 1 10.59752073 -5.746616569 24.78387304 1.039154508 0.877765332 0.413011469 0.078577325 85.56796489 143069.4368 0.006974084 0.013899818 1.79E-06 5.746616569 -0.161389176 AQPGSPES(ph)SGQPK ddPTM_HeLa_CUDC101_4h_R1 1 AQPGSPESSGQPK 13 0 Q96PN7;Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5 Q96PN7 TRERF1;BCAR2 Transcriptional-regulating factor 1 1 0 AQPGS(0.12)PES(0.824)S(0.056)GQPK 175.01 2.68E-07 23349000 2793.8 2540.7 2749.4 2730.4 2450.6 2630.8 2288.6 2231.1 2536.2 2653.5 TRUE FALSE FALSE 2466.314999 2618.975956 2898.04088 2841.757514 2269.82412 2580.621873 2376.872069 2485.079406 2431.656763 2637.716864 0.935018854 0.992895026 1.098692934 1.077355023 0.860526068 0.97835439 0.90110963 0.942132736 0.921879371 1 11.365074 -5.746350618 24.99998884 0.988099099 0.923273779 0.301021835 0.059483526 311.4968751 516104.0042 0.009159946 0.018262606 1.79E-06 5.746350618 -0.06482532 QRELEQLGR ddPTM_HeLa_CUDC101_4h_R1 1 QRELEQLGR 9 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 109.29 0.001204 0 2420.2 2717.5 2080.6 3092 3955.4 3777.8 3128.6 3139.7 3308.7 1935.3 FALSE FALSE TRUE 2136.507825 2801.222954 2193.083529 3218.105125 3663.618022 3705.744759 3249.27115 3497.110757 3172.313986 1923.78875 1.110572991 1.456096962 1.139981471 1.67279548 1.904376467 1.926274265 1.688995817 1.817824726 1.648992898 1 10.90973467 -6.44418555 0.919618636 1.044978077 1.856966208 0.476079548 0.234972365 0.13538654 0.22813282 0.026182521 0.0508921 3.60E-07 6.44418555 0.811988131 QRMPMPVNTPLGSNSR ddPTM_HeLa_CUDC101_4h_R1 1 QRMPMPVNTPLGSNSR 16 1 Q14686 Q14686 NCOA6 Nuclear receptor coactivator 6 0 0 82.651 0.01665 13903000 1806.7 1425 1694.6 1540.9 1640.3 1796.5 1722.8 1244.2 1674.9 1661.7 FALSE FALSE TRUE 1594.921365 1468.902561 1786.215202 1603.744562 1519.298337 1762.234756 1789.248973 1385.834699 1605.859913 1651.816134 0.965556233 0.889265173 1.081364423 0.970897746 0.919774487 1.066846799 1.083201051 0.838976367 0.972178368 1 10.68983739 -5.264974636 24.98649783 0.978950868 1.005027366 0.011168227 0.077635565 1135.118594 8022822.805 0.010308131 0.023838004 5.43E-06 5.264974636 0.026076499 SFSKEELMSS(ph)DLEETAGSTSIPK ddPTM_HeLa_CUDC101_4h_R1 2 SFSKEELMSSDLEETAGSTSIPK 23 1 O00567 O00567 NOP56 Nucleolar protein 56 1 0 SFSKEELMS(0.223)S(0.777)DLEETAGSTSIPK;SFSKEELMS(0.273)S(0.727)DLEETAGSTSIPK ; 122.67 1.51E-07 486691000 6601.3 5913.7 6100.3 6051.2 7640.1 6979.5 6478.6 6379.9 5981.2 7542.9 TRUE FALSE FALSE 5827.505621 6095.894088 6430.10067 6297.994092 7076.505044 6846.377666 6728.481772 7106.162028 5734.652404 7498.034495 0.777204429 0.812998939 0.857571497 0.83995267 0.94378134 0.913089646 0.897366073 0.947736641 0.764820755 1 12.87229675 -5.746308595 24.9800597 0.878996236 0.922598342 0.155259202 0.067960524 653.4025892 1078724.212 0.013014924 0.025950204 1.79E-06 5.746308595 0.043602106 SPSVPKSPT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SPSVPKSPTPK 11 1 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 1 0 SPSVPKS(0.017)PT(0.983)PK 138.2 0.025779 67391000 5449.7 3981.5 4696.6 4959.6 4266.5 3671.7 3920.2 3953.3 5297.9 4860.1 TRUE FALSE FALSE 4810.894427 4104.165296 4950.512402 5161.873925 3951.768795 3601.66844 4071.403427 4403.327692 5079.51832 4831.191909 0.99579866 0.849514027 1.024697941 1.068447295 0.817969741 0.745503078 0.842732705 0.911437131 1.051400651 1 12.23816345 -5.746051498 24.99785327 0.992220116 0.82436878 0.602343934 0.067070846 122.7721541 199444.1076 0.009327739 0.018600898 1.79E-06 5.746051498 -0.167851336 SKHEEEEWT(ph)DDDLVESL ddPTM_HeLa_CUDC101_4h_R1 3 SKHEEEEWTDDDLVESL 17 1 D6RHI7;P51946 D6RHI7 CCNH Cyclin-H 1 0 SKHEEEEWT(0.999)DDDLVES(0.001)L;SKHEEEEWT(1)DDDLVESL;SKHEEEEWT(1)DDDLVESL ;; 89.911 0.008254 68721000 26072.1 14204.9 12289.8 12118.8 30426.2 22743.1 22049.9 18021.6 22442.1 19092.4 TRUE FALSE FALSE 23015.96796 14642.53613 12954.22376 12613.05705 28181.71984 22309.31326 22900.37203 20073.1061 21517.02714 18978.83756 1.212717475 0.771519124 0.682561496 0.664585331 1.484902316 1.175483651 1.206626695 1.057657301 1.133737884 1 14.21210401 -5.745852202 24.99978776 1.013312309 1.225437009 0.29283047 0.210293677 366.8453374 588368.2139 0.035081064 0.069967392 1.80E-06 5.745852202 0.212124701 S(ph)TPSPTPVESSDPK ddPTM_HeLa_CUDC101_4h_R1 1 STPSPTPVESSDPK 14 0 Q9NW07 Q9NW07 ZNF358 Zinc finger protein 358 1 0 S(0.532)T(0.037)PS(0.421)PT(0.01)PVESSDPK 155.14 9.27E-05 33428000 6068.2 5594.7 5136.6 4742.4 5397.4 4628 3969.9 4155.6 5599.5 5794.3 TRUE FALSE FALSE 5356.894795 5767.066076 5414.300133 4935.81557 4999.244555 4539.728611 4123.020373 4628.656706 5368.68624 5759.835246 0.93004306 1.001255388 0.940009549 0.856936937 0.867949228 0.788169872 0.715822623 0.80360922 0.932090244 1 12.49181183 -5.745292483 0.905012918 0.970854813 0.750359024 0.841608737 0.035528314 0.169341282 0.259290301 0.006438529 0.022061892 1.80E-06 5.745292483 -0.220495789 ALPTSKPEGSLHS(ph)SPVGPSSSK ddPTM_HeLa_CUDC101_4h_R1 1 ALPTSKPEGSLHSSPVGPSSSK 22 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 ALPTSKPEGSLHS(0.74)S(0.256)PVGPS(0.002)S(0.002)SK 83.312 0.00045529 20542000 3091.5 1552.6 1686.3 1200.1 4117.6 3093.2 2521.2 2125.2 3358.6 2516.5 TRUE FALSE FALSE 2729.119056 1600.433766 1777.466479 1249.045265 3813.852851 3034.202364 2618.443529 2367.124178 3220.157086 2501.531746 1.090979181 0.639781513 0.710551238 0.499312178 1.524607016 1.21293778 1.046736078 0.946269893 1.287274124 1 11.28859605 -5.744987985 24.99977433 0.948685193 1.17509449 0.223134896 0.261537158 379.5646639 576788.6382 0.038461226 0.076745433 1.80E-06 5.744987985 0.226409297 EGTLTQVPLAPPPPGAPPS(ph)PAPAR ddPTM_HeLa_CUDC101_4h_R1 1 EGTLTQVPLAPPPPGAPPSPAPAR 24 0 P48634 P48634 PRRC2A Protein PRRC2A 1 0 EGTLTQVPLAPPPPGAPPS(1)PAPAR 98.376 8.64E-06 8058400 1118 1067.7 1174 882.85 1447.5 1373.3 993.88 1247.2 1069.9 1158.1 TRUE FALSE FALSE 986.9497348 1100.594571 1237.469991 918.856439 1340.720809 1347.106591 1032.214285 1389.176207 1025.798269 1151.21157 0.857313947 0.956031541 1.074928383 0.798164702 1.164617212 1.170164222 0.896633001 1.206707996 0.891059729 1 10.16893728 -5.744775737 24.99993116 0.936458006 1.098654613 0.405136374 0.106300334 210.1584697 315292.2064 0.015267281 0.030467995 1.80E-06 5.744775737 0.162196607 IKEEPVS(ph)EEGEEDEEQEAEEEPMDTSPSGLHSK ddPTM_HeLa_CUDC101_4h_R1 1 IKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSK 33 1 A0A0C4DH01;Q9NVU0-3;Q9NVU0-2;Q9NVU0-5;Q9NVU0-4;Q9NVU0 A0A0C4DH01 POLR3E DNA-directed RNA polymerase III subunit RPC5 1 0 IKEEPVS(0.996)EEGEEDEEQEAEEEPMDT(0.002)S(0.001)PSGLHSK 60.517 0.0003633 25931000 1890 758.08 581.16 614.26 1945.5 1403 1247.5 1095.9 1243.6 931.66 TRUE FALSE FALSE 1668.457065 781.4355463 612.5792675 639.3121779 1801.984341 1376.240113 1295.616493 1220.652826 1192.338282 926.1184449 1.801559049 0.843774952 0.66144808 0.690313622 1.945738529 1.486030345 1.398974937 1.318031007 1.287457655 1 9.855052907 -5.74460661 24.99990555 1.239997737 1.523666127 0.20038292 0.375028448 543.2942243 806892.2153 0.068886724 0.137479566 1.80E-06 5.74460661 0.28366839 NTPSQHSHSIQHS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 5 NTPSQHSHSIQHSPER 16 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 NTPSQHS(0.02)HS(0.006)IQHS(0.974)PER;NTPS(0.001)QHS(0.031)HS(0.209)IQHS(0.758)PER;NTPSQHS(0.184)HS(0.01)IQHS(0.806)PER;NTPSQHSHS(0.002)IQHS(0.998)PER;NTPSQHS(0.003)HS(0.005)IQHS(0.993)PER ;;;; 120.15 0.00045587 62892600 5782.84 3676.03 3304.42 3136.03 7111.67 5655.4 5204.38 4194.82 6042.32 5005.19 TRUE FALSE FALSE 5104.984261 3789.284127 3483.066941 3263.930858 6587.056273 5547.532668 5405.11468 4672.341353 5793.253012 4975.418907 1.026041095 0.761601022 0.700055012 0.656011266 1.323919934 1.114988058 1.086363738 0.939085018 1.164374924 1 12.28060228 -5.744435849 24.9999888 0.94340407 1.113887159 0.25855844 0.175827866 349.9808399 514567.8045 0.026643736 0.053178304 1.80E-06 5.744435849 0.170483089 RTS(ph)STLDSEGTFNSYR ddPTM_HeLa_CUDC101_4h_R1 1 RTSSTLDSEGTFNSYR 16 1 Q92609;Q92609-2;C9JNM0;C9JED7;F2Z3C3;C9K0P2;C9J397;C9JWX0;C9JW04;C9JDR8 Q92609 TBC1D5 TBC1 domain family member 5 1 0 RT(0.021)S(0.831)S(0.136)T(0.012)LDSEGTFNSYR 143.23 2.36E-05 0 586.9 400.71 468.47 579.43 399.26 436.43 338.64 458.64 621.21 525.31 TRUE FALSE FALSE 518.1044717 413.0554001 493.7969052 603.0616599 369.8073852 428.1058249 351.7014582 510.8497237 595.6034609 522.1854328 0.992184843 0.791012874 0.94563516 1.154880282 0.708191692 0.819834867 0.673518325 0.978291794 1.140597618 1 9.028418402 -5.7442272 24.99995665 0.984803353 0.788061653 0.407152158 0.122175645 174.5671384 253549.8949 0.015314814 0.030569253 1.80E-06 5.7442272 -0.1967417 AGAAS(ph)PLNS(ph)PLSSAVPSLGK ddPTM_HeLa_CUDC101_4h_R1 1 AGAASPLNSPLSSAVPSLGK 20 0 E7EPJ7;O75962-5;O75962-4;O75962 E7EPJ7 TRIO Triple functional domain protein 2 0 AGAAS(0.999)PLNS(0.652)PLS(0.284)S(0.06)AVPS(0.005)LGK 126.25 0.00019711 14388000 2139 1761.1 1319.4 1701.5 1882.1 2116.7 1768.9 1288 1997.5 1594.8 TRUE FALSE FALSE 1888.269663 1815.357404 1390.730755 1770.894525 1743.261233 2076.327474 1837.127066 1434.620714 1915.162205 1585.314059 1.191101317 1.145109005 0.877258829 1.117062272 1.099631472 1.309726273 1.158841086 0.904944169 1.208064859 1 10.63055296 -5.744191966 3.718226887 1.080435178 1.136793043 0.005220291 0.129044057 0.721519304 21.37573928 0.019572157 0.039262739 1.80E-06 5.744191966 0.056357866 EMEHNTVCAAGTS(ph)PVGEIGEEK ddPTM_HeLa_CUDC101_4h_R1 4 EMEHNTVCAAGTSPVGEIGEEK 22 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 EMEHNTVCAAGT(0.146)S(0.854)PVGEIGEEK;EMEHNTVCAAGT(0.281)S(0.719)PVGEIGEEK;EMEHNTVCAAGT(0.226)S(0.774)PVGEIGEEK;EMEHNTVCAAGT(0.327)S(0.673)PVGEIGEEK ;;; 134.81 5.00E-09 75771000 14650 7057.3 6468 6143.3 16659.9 13517.3 12655.3 11115.8 12585.8 8983.2 TRUE FALSE FALSE 12932.74921 7274.727048 6817.679645 6393.850328 15430.93237 13259.48002 13143.41916 12381.17774 12067.008 8929.767527 1.448273896 0.814660295 0.763477842 0.716015317 1.728032933 1.484862846 1.47186577 1.386506166 1.351323868 1 13.1244069 -5.744081603 24.99995345 1.115198466 1.5121808 0.468873895 0.248616446 242.6158003 349431.263 0.042938839 0.085718715 1.80E-06 5.744081603 0.396982335 ALEQQEAES(ph)DS(ph)SDTEEKDDDDDDEEDVGKR ddPTM_HeLa_CUDC101_4h_R1 1 ALEQQEAESDSSDTEEKDDDDDDEEDVGKR 30 2 Q9BXY0 Q9BXY0 MAK16 Protein MAK16 homolog 2 0 ALEQQEAES(0.5)DS(0.5)S(0.5)DT(0.5)EEKDDDDDDEEDVGKR 69.248 2.84E-05 74082000 5572 5756.6 5071.2 5300.4 4617 4178.5 3988.7 4057 5243 5111.1 TRUE FALSE FALSE 4918.858607 5933.954023 5345.364412 5516.573222 4276.413108 4098.802074 4142.545495 4518.832481 5026.881321 5080.69895 0.968146047 1.16794049 1.052092333 1.085790218 0.841697796 0.806739804 0.815349529 0.88941158 0.989407436 1 12.31081127 -5.743517627 24.01562713 1.011752715 0.834405961 0.713350887 0.061846419 80.00170232 107203.3107 0.010031171 0.020023427 1.81E-06 5.743517627 -0.177346754 AQLYLPS(ph)TSPPHEGLDGFAQELSR ddPTM_HeLa_CUDC101_4h_R1 1 AQLYLPSTSPPHEGLDGFAQELSR 24 0 I3L465;I3L1Z8;I3L1A6;Q8N137-4;Q8N137-5;Q8N137;Q8N137-3;Q8N137-2 I3L465 CNTROB Centrobin 1 0 AQLY(0.002)LPS(0.355)T(0.355)S(0.288)PPHEGLDGFAQELSR 64.028 0.0025529 9343900 1608 986.49 889.03 1090 1589.5 1387.3 1504.3 1233.3 1163.9 1237.4 TRUE FALSE FALSE 1419.512678 1016.882588 937.093651 1134.454911 1472.245752 1360.839564 1562.321355 1373.693887 1115.923549 1230.03989 1.154037921 0.826707 0.76184005 0.922291156 1.196908949 1.10633775 1.270138772 1.11678808 0.907225496 1 10.26448939 -5.743475482 24.98416142 1.018619669 1.174785559 0.369384633 0.126794877 306.5130177 426295.4026 0.021458248 0.042844172 1.81E-06 5.743475482 0.15616589 GVAPADS(ph)PEAPR ddPTM_HeLa_CUDC101_4h_R1 4 GVAPADSPEAPR 12 0 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 0 GVAPADS(1)PEAPR;GVAPADS(1)PEAPR;GVAPADS(1)PEAPR;GVAPADS(1)PEAPR ;;; 198.52 2.91E-16 163017000 8274 7044.8 6315.1 7595.8 6844.4 6313.8 5813.4 6409.7 7003.3 7601.1 TRUE FALSE FALSE 7304.134263 7261.841938 6656.513408 7905.589556 6339.502248 6193.374785 6037.624785 7139.354339 6714.62101 7555.888319 0.966681078 0.961083811 0.880970328 1.046281949 0.839014816 0.819675268 0.799062206 0.944872931 0.888660701 1 12.88338566 -5.74335481 24.98383279 0.97723587 0.844758027 0.410547343 0.059618552 122.6078071 169381.7317 0.007295798 0.014568173 1.81E-06 5.74335481 -0.132477843 YPEPERPS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 YPEPERPSSR 10 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 YPEPERPS(0.5)S(0.5)R 117.95 0.026952 230250000 2230.2 1813 1965.2 2037.9 1799.8 1684.9 1825.1 1484.2 1710.2 1915.5 TRUE FALSE FALSE 1968.779337 1868.856381 2071.444656 2121.014371 1667.03234 1652.76334 1895.494718 1653.155329 1639.704832 1904.106521 1.033964915 0.981487307 1.08788276 1.113915817 0.875493215 0.867999412 0.995477248 0.868205277 0.861141335 1 10.89489847 -5.743152498 24.99980196 1.025637427 0.906071557 0.350316777 0.072948039 140.6460445 192274.6881 0.007499282 0.014975776 1.81E-06 5.743152498 -0.11956587 RSEIIMSPAT(ph)LRR ddPTM_HeLa_CUDC101_4h_R1 1 RSEIIMSPATLRR 13 2 A0A0A0MQZ3;A0A5F9ZH43;A4UGR9-2;A4UGR9-3;A4UGR9;A4UGR9-8 A0A0A0MQZ3 XIRP2 Xin actin-binding repeat-containing protein 2 1 0 RSEIIMSPAT(1)LRR 79.875 0.0023822 0 3095.5 3195.4 3155.5 2824.8 2997.1 2873 2648.5 2311.1 3270.4 3122 TRUE FALSE FALSE 2732.650182 3293.846487 3326.095875 2940.007554 2776.009904 2818.202312 2750.653532 2574.186282 3135.592728 3103.430205 0.880525741 1.061356715 1.071748245 0.947341284 0.894497289 0.908092699 0.886326855 0.829464854 1.01036354 1 11.59964799 -5.743128771 3.582087672 0.963371655 0.879830783 0.428405187 0.059342861 0.270725587 7.350945281 0.01063534 0.021421432 1.81E-06 5.743128771 -0.083540872 MT(ph)FNGSCS(ph)S(ph)VCT(ph)WKS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 MTFNGSCSSVCTWKSK 16 1 Q5H8Y1;P08922 Q5H8Y1 ROS1 Tyrosine-protein kinase receptor;Proto-oncogene tyrosine-protein kinase ROS 5 0 MT(0.573)FNGS(0.447)CS(0.99)S(0.99)VCT(1)WKS(1)K 47.532 0.0033452 0 339.61 316.86 356.19 210.92 481.25 463 281.87 321.17 530.28 329.82 TRUE FALSE FALSE 299.8014306 326.622081 375.4467088 219.5222293 445.7491463 454.1690464 292.7418203 357.7306946 508.421634 327.858216 0.914424028 0.996229666 1.145149612 0.669564521 1.359579003 1.385260531 0.892891519 1.091114016 1.550736291 1 8.356928238 -5.742898124 24.99998033 0.959038348 1.176048998 0 0.252672828 248.4341878 334972.7632 0.024006404 0.047943825 1.81E-06 5.742898124 0.21701065 EFITGDVEPTDAESEWHS(ph)ENEEEEKLAGDMK ddPTM_HeLa_CUDC101_4h_R1 7 EFITGDVEPTDAESEWHSENEEEEKLAGDMK 31 1 Q99733;Q99733-2;E9PNJ7;C9J6D1;C9JZI7;A8MXH2;E9PKT8 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 EFITGDVEPT(0.001)DAES(0.066)EWHS(0.933)ENEEEEKLAGDMK;EFITGDVEPT(0.148)DAES(0.12)EWHS(0.732)ENEEEEKLAGDMK;EFITGDVEPT(0.001)DAES(0.056)EWHS(0.943)ENEEEEKLAGDMK;EFITGDVEPT(0.01)DAES(0.261)EWHS(0.729)ENEEEEKLAGDMK;EFITGDVEPT(0.02)DAES(0.274)EWHS(0.706)ENEEEEKLAGDMK;EFITGDVEPT(0.001)DAES(0.054)EWHS(0.945)ENEEEEKLAGDMK;EFITGDVEPTDAES(0.012)EWHS(0.988)ENEEEEKLAGDMK ;;;;;; 119.87 3.16E-14 2457870000 27824.2 18115 17165.1 15782.6 33806.8 26823.6 24531.5 25980.2 27483.3 23663.3 TRUE FALSE FALSE 24562.68945 18673.10168 18093.09723 16426.28265 31312.93972 26311.98452 25477.68817 28937.68095 26350.42674 23522.54964 1.044218838 0.793838337 0.769180956 0.698320671 1.331188166 1.118585567 1.083117628 1.230210219 1.120219838 1 14.52175682 -5.742049473 24.99972464 0.961311999 1.177929075 0.461285206 0.143694468 230.7561356 297516.0056 0.022327121 0.044601784 1.81E-06 5.742049473 0.216617076 ALSIS(ph)PLSDASLDLQR ddPTM_HeLa_CUDC101_4h_R1 1 ALSISPLSDASLDLQR 16 0 P10070 P10070 GLI2 Zinc finger protein GLI2 1 0 ALS(0.324)IS(0.675)PLS(0.001)DASLDLQR 160.87 5.73E-05 3992800 864.77 601.83 730.3 506.32 1016.8 931.7 762.9 788.89 810.95 642.44 TRUE FALSE FALSE 763.4029715 620.371669 769.782227 526.9699181 941.7926898 913.9293748 792.3253086 878.6940488 777.5222978 638.6187383 1.195397075 0.971427288 1.20538622 0.8251714 1.47473388 1.431103286 1.24068597 1.375929011 1.217506238 1 9.318811075 -5.741910964 24.99995502 1.077081546 1.374224727 0.589254304 0.127246168 133.883851 171394.9661 0.017777604 0.035514853 1.81E-06 5.741910964 0.297143181 QSDDEVYAPGLDIESSLK ddPTM_HeLa_CUDC101_4h_R1 1 QSDDEVYAPGLDIESSLK 18 0 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 0 118.21 0.00055904 3647200 1414.5 1021.2 1156.4 972.36 1328.9 1181.2 1216.7 1118.7 1302.1 1314.3 FALSE FALSE TRUE 1248.694454 1052.661962 1218.918482 1012.017044 1230.869695 1158.670578 1263.628527 1246.048286 1248.426887 1306.482485 0.955768231 0.805722215 0.932977285 0.774612025 0.942124911 0.886862695 0.96719898 0.953742817 0.955563432 1 10.35147207 -7.485102819 9.534045753 0.980576033 0.89480004 0.255981097 0.059883945 0.383287716 93.415278 0.01010927 0.011292423 3.27E-08 7.485102819 -0.085775992 VSS(ph)PLSPLSPGIKS(ph)PTIPR ddPTM_HeLa_CUDC101_4h_R1 1 VSSPLSPLSPGIKSPTIPR 19 1 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 2 0 VS(0.199)S(0.749)PLS(0.052)PLS(0.369)PGIKS(0.379)PT(0.252)IPR 73.994 0.012165 19918000 1161.5 1006.7 865.44 975.61 1390.6 1417.3 1150.9 1065.8 1147 1277.9 TRUE FALSE FALSE 1025.350731 1037.715234 912.2283042 1015.399593 1288.018208 1390.267364 1195.290599 1187.126364 1099.720175 1270.298994 0.807172749 0.816906286 0.718120937 0.799339051 1.013948853 1.094441049 0.940952173 0.934525155 0.865717583 1 10.31095239 -5.741908796 24.84090333 0.876400738 0.999071111 0.420738837 0.084601888 273.7525594 348183.0994 0.016164149 0.032290393 1.81E-06 5.741908796 0.122670373 ATT(ph)PASTANSDVATIPTDTPLKEENEGFVK ddPTM_HeLa_CUDC101_4h_R1 1 ATTPASTANSDVATIPTDTPLKEENEGFVK 30 1 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 AT(0.203)T(0.775)PAS(0.007)T(0.006)ANS(0.008)DVATIPTDTPLKEENEGFVK 100.69 4.29E-09 3126300 1263.6 1505.5 1141.4 1308.4 1243.7 1206.1 1089.8 1064.5 1842.6 1408.9 TRUE FALSE FALSE 1115.482723 1551.882671 1203.107537 1361.762207 1151.954729 1183.095652 1131.833951 1185.678377 1766.647248 1400.5198 0.796477653 1.108076209 0.859043575 0.97232628 0.822519416 0.844754677 0.808152767 0.846598796 1.261422543 1 10.45174666 -5.741523924 24.65817883 0.919209495 0.829927416 0.141015617 0.1348476 294.8996766 365125.427 0.013828487 0.027625529 1.81E-06 5.741523924 -0.089282079 PCSEETPAIS(ph)PSKR ddPTM_HeLa_CUDC101_4h_R1 3 PCSEETPAISPSKR 14 1 P33316-2;H0YNJ9 P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 0 PCSEET(0.059)PAIS(0.917)PS(0.024)KR;PCSEET(0.001)PAIS(0.551)PS(0.448)KR;PCSEETPAIS(0.987)PS(0.013)KR ;; 177.39 3.28E-07 4475124000 18546.86 17180.95 16575.78 17097.33 15108.35 12933.27 13501.69 15496.07 15789.98 15772 TRUE FALSE FALSE 16372.82519 17710.27471 17471.91681 17794.63302 13993.83712 12686.58942 14022.45471 17260.07997 15139.11034 15678.18744 1.044305998 1.129612385 1.114409231 1.134993001 0.89256728 0.809187253 0.894392592 1.100897667 0.965616108 1 13.93647116 -5.741450999 24.99743108 1.045386951 0.913908117 0.37330491 0.086648508 216.6501059 270940.8164 0.012782907 0.025539643 1.81E-06 5.741450999 -0.131478834 S(ph)S(ph)KASLGSLEGEAEAEASSPK ddPTM_HeLa_CUDC101_4h_R1 2 SSKASLGSLEGEAEAEASSPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 S(0.656)S(0.656)KAS(0.639)LGS(0.049)LEGEAEAEASSPK;S(0.5)S(0.5)KAS(0.5)LGS(0.5)LEGEAEAEASSPK ; 63.857 0.013757 88477000 9136.5 8203.3 7723.8 7367.8 9345.6 9034.5 8017.2 7252.1 8989.7 8058 TRUE FALSE FALSE 8065.53332 8456.03395 8141.371991 7668.29073 8656.193707 8862.181965 8326.42609 8077.64975 8619.140761 8010.070658 1.006924116 1.055675326 1.016392032 0.957331222 1.080663839 1.106379999 1.039494712 1.008436766 1.076038044 1 12.96759925 -5.741242501 24.99779243 1.005935352 1.060771481 0.154549558 0.03945103 193.6110938 239632.2285 0.004775392 0.009540993 1.81E-06 5.741242501 0.054836129 SSS(ph)PAPADIAQTVQEDLR ddPTM_HeLa_CUDC101_4h_R1 20 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 0 SSS(1)PAPADIAQTVQEDLR;S(0.015)S(0.015)S(0.97)PAPADIAQTVQEDLR;S(0.001)S(0.014)S(0.986)PAPADIAQTVQEDLR;S(0.001)S(0.018)S(0.982)PAPADIAQTVQEDLR;SS(0.026)S(0.974)PAPADIAQTVQEDLR;S(0.006)S(0.224)S(0.77)PAPADIAQTVQEDLR;S(0.162)S(0.162)S(0.677)PAPADIAQTVQEDLR;S(0.014)S(0.025)S(0.96)PAPADIAQTVQEDLR;SS(0.003)S(0.997)PAPADIAQTVQEDLR;S(0.194)S(0.194)S(0.608)PAPADIAQT(0.004)VQEDLR;S(0.199)S(0.199)S(0.602)PAPADIAQTVQEDLR;S(0.026)S(0.464)S(0.51)PAPADIAQTVQEDLR;S(0.001)S(0.079)S(0.92)PAPADIAQTVQEDLR;S(0.001)S(0.014)S(0.986)PAPADIAQTVQEDLR;S(0.05)S(0.05)S(0.9)PAPADIAQTVQEDLR;SS(0.003)S(0.996)PAPADIAQTVQEDLR;S(0.153)S(0.153)S(0.694)PAPADIAQTVQEDLR;SS(0.028)S(0.972)PAPADIAQTVQEDLR;S(0.118)S(0.118)S(0.763)PAPADIAQTVQEDLR;SS(0.078)S(0.922)PAPADIAQTVQEDLR ;;;;;;;;;;;;;;;;;;; 310.08 1.27E-144 23377709760 34534.52 34884.99 33193.68 32731.954 34209.974 32323.68 29403.81 29756.13 35299.84 35135.33 TRUE FALSE FALSE 30486.43592 35959.75519 34988.23075 34066.90456 31686.37237 31707.15966 30537.9248 33143.44756 33844.76565 34926.34349 0.872877973 1.029588316 1.001771936 0.975392817 0.907234174 0.907829348 0.874352187 0.948952689 0.969032606 1 15.09202799 -5.741219537 22.43312286 0.95340464 0.906948965 0.267393898 0.045115912 126.0355992 139828.1549 0.008600283 0.017173759 1.81E-06 5.741219537 -0.046455674 LS(ph)LDLSHR ddPTM_HeLa_CUDC101_4h_R1 2 LSLDLSHR 8 0 A0A0J9YYG8;Q8TDM6-4;Q8TDM6;A0A0A0MSL1;Q8TDM6-2 A0A0J9YYG8 DLG5 Disks large homolog 5 1 0 LS(1)LDLSHR;LS(1)LDLSHR ; 78.655 0.029609 15852200 15469.2 11786.9 10280.3 11269.8 11104.4 10954.3 8169.8 4250.9 11937.1 11400.7 TRUE FALSE FALSE 13655.92383 12150.04042 10836.08411 11729.43116 10285.25054 10745.36498 8484.911923 4734.805273 11445.04769 11332.88813 1.20498179 1.072104505 0.95616263 1.034990465 0.907557757 0.948157685 0.74869811 0.417793348 1.00989682 1 13.46822795 -4.152105167 0.733211486 1.085661679 1.19E-15 0.863101363 0.075361552 0.928456864 0.315350462 0.015588066 0.859625723 7.05E-05 4.152105167 -1.085661679 down T(ph)Y(ph)VDEVNSELVNIYT(ph)FNHTVTR ddPTM_HeLa_CUDC101_4h_R1 1 TYVDEVNSELVNIYTFNHTVTR 22 0 E9PMC3;F5H8L4;C9JBG5;Q8NBJ9;Q8NBJ9-2 E9PMC3 SIDT2 SID1 transmembrane family member 2 3 0 T(0.99)Y(0.994)VDEVNS(0.016)ELVNIYT(0.452)FNHT(0.301)VT(0.247)R 50.865 0.018479 7751200 2536.1 1223.6 1020.1 1028.1 2983.3 2593.2 2291.5 1392.7 1718.1 1746.4 TRUE FALSE FALSE 2238.822202 1261.297666 1075.249692 1070.030362 2763.227903 2543.739031 2379.883923 1551.239339 1647.279191 1736.012335 1.289634962 0.726548792 0.619379062 0.616372557 1.591709832 1.465277048 1.370891136 0.893564698 0.948886801 1 10.76156148 -5.741063123 24.99905212 1.030130291 1.342892466 0.311021549 0.280444797 330.5597413 405552.1765 0.046499116 0.092910715 1.82E-06 5.741063123 0.312762176 QSGEAFVELGSEDDVK ddPTM_HeLa_CUDC101_4h_R1 1 QSGEAFVELGSEDDVK 16 0 P52597;A0A1B0GW42 P52597 HNRNPF "Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed" 0 0 235.88 1.44E-42 18348000 2184.7 1861.4 1695 1777.6 2034.2 1835.8 1939.6 1709.2 2223.3 1628.8 FALSE FALSE TRUE 1928.612778 1918.747528 1786.636827 1850.098211 1884.141119 1800.785174 2014.411022 1903.768419 2131.654633 1619.111825 1.191154773 1.185061771 1.103467222 1.142662405 1.163688072 1.11220556 1.244145704 1.175810336 1.316558004 1 10.66098691 -9.306012515 0.851703915 0.99145391 1.165397759 0 0.105463784 0.294817001 0.353237987 0.034445786 0.007616482 4.94E-10 9.306012515 0.173943849 Y(ph)S(ph)MRPTTVAY(ph)VHK ddPTM_HeLa_CUDC101_4h_R1 1 YSMRPTTVAYVHK 13 1 A0A2R8YGW2 A0A2R8YGW2 3 0 Y(1)S(0.964)MRPT(0.036)T(0.033)VAY(0.967)VHK 67.519 0.002364 0 1214.5 1445.5 1830.2 1628.4 896.45 1154.6 1074 903.85 1199.4 1370 TRUE FALSE FALSE 1072.138151 1490.034142 1929.146148 1694.813191 830.3206695 1132.577929 1115.42454 1006.740631 1149.960224 1361.851179 0.787265281 1.09412406 1.416561646 1.244492215 0.609700004 0.831645885 0.819050243 0.739244233 0.844409611 1 10.41135334 -5.740883259 24.99811399 0.978062444 0.760687011 0.3460853 0.190573643 332.1288816 403896.7544 0.03253128 0.065002565 1.82E-06 5.740883259 -0.217375433 ERPSGPES(ph)PVQGPR ddPTM_HeLa_CUDC101_4h_R1 2 ERPSGPESPVQGPR 14 1 A0A669KBI7;Q9UMN6 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 0 ERPSGPES(1)PVQGPR;ERPSGPES(1)PVQGPR ; 99.273 0.004554 51729000 6472.4 6020.3 5773 5979.5 5726.5 5154.8 5590.5 5134.8 6838.2 5842 TRUE FALSE FALSE 5713.715084 6205.778307 6085.105842 6223.369856 5304.067504 5056.480778 5806.127458 5719.324876 6556.326502 5807.251524 0.983893165 1.068625714 1.047846097 1.071654952 0.913352467 0.870718404 0.999806437 0.984859163 1.128989587 1 12.50363981 -5.740797446 24.99362278 1.008144366 0.941195302 0.328055804 0.059674002 241.4960085 292406.2161 0.007306567 0.01459918 1.82E-06 5.740797446 -0.066949064 SGS(ph)AAQAEGLCK ddPTM_HeLa_CUDC101_4h_R1 1 SGSAAQAEGLCK 12 0 F8WF93;H7BZZ2;F8WE30;H7C0X4;Q92685 F8WF93 ALG3 "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase" 1 0 S(0.004)GS(0.996)AAQAEGLCK 121.24 0.0031676 25406000 2620.5 1688.2 2079.7 1991.8 1985.1 1868.2 1852.4 1580.1 1995.5 1694.7 TRUE FALSE FALSE 2313.328962 1740.211441 2192.134873 2073.034213 1838.663128 1832.567198 1923.847689 1759.972197 1913.244645 1684.619849 1.373205334 1.032999488 1.301263828 1.230564993 1.091440973 1.087822394 1.142007017 1.044729586 1.13571299 1 10.71820735 -5.74067037 23.77410108 1.182217586 1.09484488 0.13652782 0.107431135 308.4142909 353034.8482 0.021385832 0.042724775 1.82E-06 5.74067037 -0.087372706 LLDPEDIS(ph)VDHPDEK ddPTM_HeLa_CUDC101_4h_R1 1 LLDPEDISVDHPDEK 15 0 A0A087WUZ3;Q01082;Q01082-2;F8W6C1;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 LLDPEDIS(1)VDHPDEK 75.564 0.018512 5194300 1390.8 1537.5 1507 1151.2 1965.9 2016.1 1674.9 1454 1517.4 1585.4 TRUE FALSE FALSE 1227.772532 1584.868553 1588.472978 1198.150912 1820.879474 1977.646252 1739.501454 1619.517483 1454.85213 1575.96997 0.779058329 1.005646416 1.007933532 0.760262527 1.155402392 1.254875593 1.103765609 1.027632197 0.923147114 1 10.62202433 -5.740300497 24.96754208 0.903294944 1.141690724 0.556082807 0.09721655 150.5215155 177782.8848 0.016465412 0.032904714 1.82E-06 5.740300497 0.23839578 RSQS(ph)FNNYDK ddPTM_HeLa_CUDC101_4h_R1 1 RSQSFNNYDK 10 1 A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-4;Q8IVL1-8;Q8IVL1-9;Q8IVL1-10;Q8IVL1-13;Q8IVL1-12;Q8IVL1-11;Q8IVL1-3;Q8IVL1-2;Q8IVL1 A0A0A0MTL4 NAV2 Neuron navigator 2 1 0 RS(0.004)QS(0.996)FNNYDK 87.447 0.0023055 0 1127.5 1089.8 1061.2 922.91 879.27 597.68 772.21 550.33 940.1 1134.3 TRUE FALSE FALSE 995.3361592 1123.375446 1118.571682 960.550259 814.4080039 586.2802498 801.9943984 612.9773427 901.3486801 1127.553133 0.882739917 0.996294909 0.992034565 0.851889131 0.722279048 0.51995798 0.711269717 0.543634996 0.799384662 1 10.1389797 -5.739063656 2.199939978 0.950595909 0.60354372 0.789948941 0.077096128 0.080538145 0.794365812 0.009808192 0.021453178 1.82E-06 5.739063656 -0.347052189 SDGPAS(ph)PVEGPKDPSCPK ddPTM_HeLa_CUDC101_4h_R1 1 SDGPASPVEGPKDPSCPK 18 1 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 1 0 S(0.002)DGPAS(0.989)PVEGPKDPS(0.009)CPK 65.598 0.015569 9643700 1097.6 883.56 850.02 1041.8 663.29 694.75 892.59 289.43 832.93 812.46 TRUE FALSE FALSE 968.9409919 910.7814363 895.9746524 1084.289107 614.3604182 681.4988013 927.0174953 322.3775413 798.5962729 807.6274518 1.199737564 1.127724713 1.109391032 1.342560985 0.760697791 0.843828178 1.147828115 0.399166151 0.988817642 1 9.657546139 -5.739034414 24.99973927 1.116071315 0.817586831 0.420790789 0.193959894 193.0091528 215360.8386 0.02643197 0.05283253 1.82E-06 5.739034414 -0.298484485 QSK(ac)VDK(ac)LYAGLKDLAEER ddPTM_HeLa_CUDC101_4h_R1 1 QSKVDKLYAGLKDLAEER 18 3 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 2 QSK(1)VDK(1)LYAGLKDLAEER 64.275 0.031174 0 73.309 308.37 275.15 219.34 198.39 0 142.99 361.87 199.34 0 FALSE TRUE FALSE 64.71583015 317.8705142 290.0254413 228.2856333 183.7551649 0 148.5051722 403.0638181 191.1231208 0 0 LNELEAMT(ph)RVR ddPTM_HeLa_CUDC101_4h_R1 2 LNELEAMTRVR 11 1 P29375;P29375-2;F5H322;F5GZR8 P29375 KDM5A Lysine-specific demethylase 5A 1 0 LNELEAMT(1)RVR;LNELEAMT(1)RVR ; 102.95 0.00045198 0 5026.7 3813 4441.1 4942.4 3735.3 3903.7 3895.4 3832.7 4387.3 4339.2 TRUE FALSE FALSE 4437.477846 3930.47401 4681.1993 5143.972435 3459.754361 3829.243427 4045.646883 4268.999076 4206.453637 4313.390245 1.028767998 0.911226155 1.085271453 1.192559018 0.802096301 0.887757242 0.937927396 0.98970852 0.975208223 1 12.07460653 -5.738995977 24.99962218 1.022531124 0.905582424 0.365148653 0.081958072 217.3580844 242113.1126 0.011661433 0.023308412 1.82E-06 5.738995977 -0.1169487 IQPSS(ph)PPPNHPNNHLFR ddPTM_HeLa_CUDC101_4h_R1 2 IQPSSPPPNHPNNHLFR 17 0 H0Y4E8;Q9Y2K2-7;Q9Y2K2-8;Q9Y2K2 H0Y4E8 SIK3 Serine/threonine-protein kinase SIK3 1 0 IQPS(0.453)S(0.547)PPPNHPNNHLFR;IQPS(0.189)S(0.811)PPPNHPNNHLFR ; 90.725 0.0042626 13699000 2115.8 1748.58 1512.89 1976.86 1663.92 1770.44 1774.32 1646.77 1700.85 1782.37 TRUE FALSE FALSE 1867.789131 1802.451677 1594.68141 2057.484896 1541.175937 1736.671807 1842.756117 1834.23164 1630.740243 1771.768384 1.054194864 1.017317892 0.90005072 1.161260645 0.869851811 0.980191216 1.040066034 1.035254753 0.920402609 1 10.7909743 -5.738338443 24.99999801 1.023515981 0.985453608 0.007069283 0.080769066 579.8528396 627517.8875 0.010203925 0.020397599 1.83E-06 5.738338443 -0.038062374 SRS(ph)DIDVNAAASAK ddPTM_HeLa_CUDC101_4h_R1 1 SRSDIDVNAAASAK 14 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 S(0.019)RS(0.981)DIDVNAAASAK 151.58 0.00010808 624190000 8318.1 6758.6 6941.7 7052 7276.8 6362 6530.5 6802.4 6601 6867.3 TRUE FALSE FALSE 7343.064927 6966.824455 7316.989299 7339.611041 6740.004961 6240.65545 6782.383573 7576.75772 6328.903986 6826.452994 1.075677945 1.020562869 1.071858153 1.075171989 0.987336318 0.914187127 0.993544316 1.109911359 0.927114563 1 12.73692044 -5.737877128 24.89905353 1.040779234 0.994476325 0.01715352 0.061791132 346.940718 366622.5748 0.007841489 0.015675546 1.83E-06 5.737877128 -0.046302909 ELNSNHDGADET(ph)SEKEQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_HeLa_CUDC101_4h_R1 1 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK 44 2 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNS(0.003)NHDGADET(0.498)S(0.498)EKEQQEAIEHIDEVQNEIDRLNEQASEEILK 48.546 0.0030097 20418000 2225.3 996.38 1223.4 1232.4 2394.6 2183 1796.9 1666.7 2160.9 1707.6 TRUE FALSE FALSE 1964.453707 1027.077287 1289.540705 1282.662599 2217.955129 2141.362912 1866.207035 1856.430391 2071.826787 1697.443119 1.157301641 0.605073169 0.759695974 0.755643935 1.306644743 1.261522632 1.099422428 1.093662798 1.220557416 1 10.72914752 -5.737760547 24.99996145 0.990779889 1.188907309 0.281823061 0.193464456 334.9929976 353681.5636 0.030949912 0.061872607 1.83E-06 5.737760547 0.19812742 THS(ph)EGSLLQEPR ddPTM_HeLa_CUDC101_4h_R1 2 THSEGSLLQEPR 12 0 C9J582;P49796-1;P49796-4;P49796-6;P49796 C9J582 RGS3 Regulator of G-protein signaling 3 1 0 T(0.251)HS(0.749)EGSLLQEPR;T(0.179)HS(0.82)EGS(0.001)LLQEPR ; 116.58 0.0026305 8080900 3412.6 2952.7 2899.4 2972.1 3661 3690.9 3356.7 2763.9 3176.2 3257.6 TRUE FALSE FALSE 3012.580201 3043.669187 3056.150334 3093.315085 3390.935324 3620.502232 3486.169043 3078.531204 3045.275692 3238.22365 0.930318757 0.939919387 0.943773706 0.9552506 1.047159088 1.118051939 1.076568335 0.950685171 0.940415493 1 11.66098691 -5.737740414 6.694334202 0.961339887 1.055701483 0.530428982 0.043704215 0.113670946 18.08739391 0.006859611 0.013515891 1.83E-06 5.737740414 0.094361597 SLLGDSAPTLHLNKGT(ph)PSQS(ph)PVVGR ddPTM_HeLa_CUDC101_4h_R1 1 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 0 SLLGDS(0.018)APT(0.036)LHLNKGT(0.899)PS(0.237)QS(0.809)PVVGR 91.064 2.47E-05 233300000 3767.8 2592.6 2726.4 2555.9 4202.2 3304.9 3910.9 3509.8 3645.9 3251.9 TRUE FALSE FALSE 3326.144196 2672.474933 2873.797431 2660.14065 3892.212078 3241.864539 4061.744723 3909.341445 3495.614459 3232.557554 1.028951268 0.826736999 0.889016632 0.822921357 1.204065825 1.00287914 1.256511185 1.209364839 1.081377331 1 11.65846034 -5.737396474 24.99749128 0.976102091 1.162703865 0.522528352 0.1029743 175.5023369 182469.3957 0.015373735 0.030735202 1.83E-06 5.737396474 0.186601774 VAPLWHS(ph)SSEVISMADR ddPTM_HeLa_CUDC101_4h_R1 2 VAPLWHSSSEVISMADR 17 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 VAPLWHS(0.607)S(0.339)S(0.052)EVIS(0.002)MADR;VAPLWHS(0.625)S(0.323)S(0.052)EVISMADR ; 130.02 0.00016811 16260900 4276.1 3537.9 3324.4 3458 4815.9 4648.1 4269.6 4377 3667.8 3354.3 TRUE FALSE FALSE 3774.86204 3646.898506 3504.12712 3599.032187 4460.640652 4559.445237 4434.279902 4875.259988 3516.611732 3334.348474 1.132113835 1.093736463 1.050918087 1.079380939 1.337784783 1.367417135 1.329878966 1.462132715 1.05466233 1 11.70318917 -5.737366287 4.107383096 1.065590695 1.37662351 0.92039755 0.044211038 0.053669161 2.006053814 0.008512709 0.017005844 1.83E-06 5.737366287 0.311032815 QSNVAAPGDATPPAEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 QSNVAAPGDATPPAEKK 17 1 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 0 1 ; QSNVAAPGDATPPAEK(1)K;QSNVAAPGDATPPAEK(1)K 219.53 4.66E-32 2863000 1768.46 2110.43 2064.34 1689.06 2043 1687.62 1761.75 1752.2 2215.23 2729.9 FALSE TRUE FALSE 1561.1638 2175.449847 2175.944465 1757.947168 1892.29196 1655.43146 1829.701288 1951.663365 2123.917282 2713.662433 0.575297716 0.801665609 0.801847878 0.647813503 0.697320321 0.610035884 0.674255304 0.719199021 0.782675566 1 11.40602555 -9.441095876 1.075597565 1.006954676 0.682882155 0.335420918 0.094836593 0.232796752 0.464794592 0.058999372 0.01349597 3.62E-10 9.441095876 -0.324072521 ATT(ph)PPNQGRPDS(ph)PVYANLQELK ddPTM_HeLa_CUDC101_4h_R1 1 ATTPPNQGRPDSPVYANLQELK 22 1 Q1RLN5;Q8IWW6-3;Q8IWW6-2;Q8IWW6-4;Q8IWW6 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 2 0 AT(0.197)T(0.812)PPNQGRPDS(0.891)PVY(0.1)ANLQELK 64.574 0.012576 141720000 4255 3743.3 3364.4 3562.3 3668.3 2926.8 3367 3792.4 4217.3 3355.2 TRUE FALSE FALSE 3756.23535 3858.626636 3546.289641 3707.585992 3397.696817 2870.976166 3496.866318 4224.111487 4043.461109 3335.243121 1.12622535 1.156925146 1.063277702 1.111638899 1.01872538 0.860799666 1.048459195 1.266507818 1.212343737 1 11.70357621 -5.737281497 24.96034251 1.072662185 1.035195361 0 0.10987891 866.0377077 894801.3613 0.015538591 0.031063414 1.83E-06 5.737281497 -0.037466825 SGSPRPTEPT(ph)DFLMLFEGSPSGK ddPTM_HeLa_CUDC101_4h_R1 2 SGSPRPTEPTDFLMLFEGSPSGK 23 1 Q9UPN4-3;Q9UPN4-2;I3L2J8;Q9UPN4 Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa 1 0 S(0.001)GS(0.009)PRPT(0.186)EPT(0.804)DFLMLFEGSPSGK;S(0.02)GS(0.155)PRPT(0.397)EPT(0.428)DFLMLFEGSPSGK ; 68.458 0.0017187 52668000 5535.7 4612.7 5442.4 5337.2 6193.6 6465.8 5445.7 5078.7 6106.6 6183.8 TRUE FALSE FALSE 4886.813638 4754.81182 5736.632606 5554.874085 5736.710467 6342.475638 5655.742473 5656.838679 5854.883363 6147.018483 0.794989254 0.773515133 0.933238223 0.903669657 0.93325089 1.031797066 0.920078976 0.920257308 0.952475315 1 12.58567111 -5.736657175 2.954881025 0.892036965 0.957077223 0.148863919 0.069970395 0.506686739 9.068537316 0.013802772 0.028540754 1.83E-06 5.736657175 0.065040257 RVES(ph)EES(ph)GDEEGK ddPTM_HeLa_CUDC101_4h_R1 1 RVESEESGDEEGK 13 1 B5MBZ8;Q15435-3;Q15435;H7C118;C9JRC4;C9JD73 B5MBZ8 PPP1R7 Protein phosphatase 1 regulatory subunit 7 2 0 RVES(1)EES(1)GDEEGK 120.21 0.0043048 15171000 5292.5 4463.3 4536.7 4715.5 4558.5 4615.9 3919.7 4046.6 5227.6 4524.3 TRUE FALSE FALSE 4672.121173 4600.808983 4781.967725 4907.818472 4222.228537 4527.859398 4070.884142 4507.248587 5012.116115 4497.389262 1.038851854 1.022995501 1.063276369 1.091259436 0.938817676 1.006775072 0.905166065 1.002192233 1.114450145 1 12.13487204 -5.736292502 24.99989556 1.027462498 0.962199582 0.424895146 0.04605359 174.9750865 173951.5196 0.005452899 0.010902328 1.84E-06 5.736292502 -0.065262916 ALSAAVADSLT(ph)NSPR ddPTM_HeLa_CUDC101_4h_R1 1 ALSAAVADSLTNSPR 15 0 Q14687-3;Q14687;Q14687-2;H7C3B5 Q14687-3 GSE1 Genetic suppressor element 1 1 0 ALSAAVADS(0.002)LT(0.599)NS(0.4)PR 144.15 0.0016727 36940000 1865.3 1928.5 1718.1 1598.6 2219.3 2207.1 1860.4 1809.4 2019.8 1979.6 TRUE FALSE FALSE 1646.652362 1987.914799 1810.985683 1663.797818 2055.58666 2165.003245 1932.156251 2015.374782 1936.542989 1967.825251 0.836787901 1.01020901 0.92029802 0.845500797 1.044598172 1.100200967 0.981873899 1.024163493 0.98410313 1 10.9423864 -5.736069969 24.93611835 0.92334818 1.038184674 0.40546964 0.061585982 187.1388068 183941.5233 0.010594973 0.021183732 1.84E-06 5.736069969 0.114836493 T(ph)SSKS(ph)T(ph)HPSPPTTR ddPTM_HeLa_CUDC101_4h_R1 1 TSSKSTHPSPPTTR 14 1 A0A182DWF7;Q02505-2;Q02505-3;Q02505-4;Q02505-5;Q02505 A0A182DWF7 MUC3A Mucin-3A 3 0 T(0.712)S(0.327)S(0.357)KS(0.753)T(0.715)HPS(0.132)PPT(0.002)T(0.001)R 75.968 0.0026692 0 1092.2 3051.9 996.64 1565.3 992.22 939.55 1019.4 996.15 1308.6 1331 TRUE FALSE FALSE 964.1739717 3145.925422 1050.521373 1629.1397 919.0259074 921.6296491 1058.718599 1109.547689 1254.658954 1323.083153 0.72873271 2.377723135 0.793994974 1.23132072 0.694609334 0.696577269 0.800190523 0.838607677 0.948284279 1 10.36968802 -5.735775509 24.92087213 1.010375534 0.756194368 0.11023053 0.454382785 534.5096659 519032.0299 0.067866831 0.135695039 1.84E-06 5.735775509 -0.254181165 RS(ph)SITEPEGPNGPNIQK ddPTM_HeLa_CUDC101_4h_R1 2 RSSITEPEGPNGPNIQK 17 1 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 0 RS(0.497)S(0.437)IT(0.066)EPEGPNGPNIQK;RS(0.429)S(0.429)IT(0.143)EPEGPNGPNIQK ; 172.3 4.90E-12 26097000 4622.8 3737.7 3435 3847.3 3705.3 3430.1 3243.3 3219.8 3728.4 3516.1 TRUE FALSE FALSE 4080.922392 3852.854107 3620.70649 4004.209523 3431.967401 3364.676557 3368.395167 3586.329017 3574.713774 3495.186081 1.167583727 1.102331612 1.035912368 1.145635577 0.981912643 0.962660207 0.963724131 1.026076705 1.022753493 1 11.77115355 -5.735448485 24.05738427 1.083466446 0.98067884 0.446757461 0.051851073 128.5604159 118995.3781 0.009788212 0.019569909 1.84E-06 5.735448485 -0.102787606 NS(ph)PVT(ph)KTPPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_HeLa_CUDC101_4h_R1 1 NSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLR 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 0 NS(0.829)PVT(0.427)KT(0.42)PPRDLPT(0.202)IPGVT(0.038)S(0.026)PS(0.029)S(0.029)DEPPMEASQSHLR 43.483 0.020964 23022000 542.82 334.07 213.84 163.47 719.72 472.7 464.33 434.05 514.24 403.08 TRUE FALSE FALSE 479.1914625 344.3623007 225.4008372 170.1370132 666.6276895 463.6840351 482.2393636 483.4604975 493.0428095 400.6824622 1.1959382 0.859439414 0.562542308 0.424618068 1.66373064 1.157235664 1.203544974 1.206592609 1.230507586 1 8.646315555 -5.735408398 24.9999601 0.989346958 1.289577655 0.31698892 0.281194408 302.8481414 290851.4973 0.044155604 0.088288004 1.84E-06 5.735408398 0.300230697 SAPAS(ph)PTHPGLMSPR ddPTM_HeLa_CUDC101_4h_R1 3 SAPASPTHPGLMSPR 15 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 1 0 SAPAS(1)PTHPGLMSPR;S(0.002)APAS(0.997)PT(0.001)HPGLMSPR;S(0.064)APAS(0.928)PT(0.007)HPGLMSPR ;; 245.39 1.29E-55 118983000 1988.53 1583.37 1404.3 1164.65 2593.27 1914.22 1967.65 2155.41 2011.54 1873.58 TRUE FALSE FALSE 1755.437528 1632.151753 1480.220706 1212.149461 2401.969639 1877.709443 2043.54292 2400.773162 1928.62347 1862.435863 0.942549251 0.876353267 0.794776741 0.650840915 1.28969254 1.008200862 1.097242037 1.289050114 1.035538194 1 10.86297503 -5.735388351 24.99999764 0.929227586 1.154142775 0.512344844 0.132653986 181.2435317 173930.3034 0.019799792 0.039589478 1.84E-06 5.735388351 0.224915188 SKETSSPGTDDVFTPAPSDS(ph)PSSQR ddPTM_HeLa_CUDC101_4h_R1 2 SKETSSPGTDDVFTPAPSDSPSSQR 25 1 P19634 P19634 SLC9A1 Sodium/hydrogen exchanger 1 1 0 SKETSSPGTDDVFT(0.002)PAPS(0.204)DS(0.713)PS(0.079)S(0.003)QR;SKETSSPGTDDVFT(0.003)PAPS(0.202)DS(0.6)PS(0.145)S(0.05)QR ; 160.93 2.06E-11 9534800 4151.3 3824.33 3051.45 3777.8 3098.58 3205.74 2709.7 2959.08 2849.12 3222.88 TRUE FALSE FALSE 3664.690907 3942.153074 3216.420617 3931.875013 2870.003927 3144.595851 2814.214037 3295.929706 2731.678068 3203.710166 1.143889652 1.230496165 1.003967416 1.227287991 0.895837569 0.98154817 0.878423419 1.028785232 0.852660798 1 11.64552792 -5.735297761 24.99954103 1.087702787 0.943839599 0.237433939 0.113225578 189.9707378 181670.2946 0.013301378 0.026596247 1.84E-06 5.735297761 -0.143863188 GDQCCYSHSPPT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 GDQCCYSHSPPTPR 14 0 Q9NXH9-2;Q9NXH9 Q9NXH9-2 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase 1 0 GDQCCYSHSPPT(1)PR;GDQCCYSHS(0.001)PPT(0.999)PR;GDQCCYSHSPPT(1)PR;GDQCCYS(0.029)HS(0.098)PPT(0.873)PR ;;; 111.09 0.0046667 93929900 6478.7 6081.1 6112.9 6458.1 6971.9 7021.7 7193.8 9051.2 6043.2 2940.06 TRUE FALSE FALSE 5719.276607 6268.451483 6443.381865 6721.489232 6457.596827 6887.772771 7471.267276 10081.55202 5794.096738 2922.572392 1.9569324 2.144840449 2.204695385 2.299853803 2.209559238 2.356750098 2.556401099 3.449547408 1.98253318 1 11.51302305 -5.734450665 0.109650551 8.74E-16 4.78371057 0.609081323 0.357526447 5.669181376 0.192034444 2.667265348 5.817371124 1.84E-06 5.734450665 4.78371057 S(ph)PSPVLR ddPTM_HeLa_CUDC101_4h_R1 4 SPSPVLR 7 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-2 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 S(0.924)PS(0.076)PVLR;S(0.603)PS(0.397)PVLR;S(0.994)PS(0.006)PVLR;S(0.989)PS(0.011)PVLR ;;; 104.44 0.016768 776839000 8071.3 6577.1 6709.7 7066 6872.8 6513.6 6470.2 6164.49 7010.9 6691.6 TRUE FALSE FALSE 7125.194449 6779.732655 7072.446678 7354.182022 6365.807237 6389.363932 6719.757781 6866.230624 6721.907735 6651.798066 1.071168183 1.019233084 1.063238332 1.105593097 0.957005485 0.960546888 1.010216744 1.032236781 1.010539958 1 12.69952866 -5.734428619 24.99994006 1.040160284 0.989341538 0.356120724 0.035852818 234.7899431 217309.9575 0.005900662 0.011798864 1.84E-06 5.734428619 -0.050818746 HSS(ph)ETFSSTPSATR ddPTM_HeLa_CUDC101_4h_R1 1 HSSETFSSTPSATR 14 0 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 HS(0.008)S(0.992)ETFSSTPSATR 136.33 0.00063937 15013000 1801.4 1182.4 1047.6 1012.7 2112.4 1909.6 1723.8 1339.1 1551.2 1501.1 TRUE FALSE FALSE 1590.242623 1218.828343 1104.236425 1054.002283 1956.57246 1873.177562 1790.287543 1491.537731 1487.258879 1492.17139 1.065723839 0.816815247 0.740019834 0.706354706 1.311225019 1.255336735 1.199786804 0.999575344 0.99670781 1 10.54319754 -5.734320967 24.99999771 0.969363096 1.196635357 0.461780028 0.145407654 214.4375128 197685.177 0.024170266 0.048330855 1.84E-06 5.734320967 0.227272261 ASS(ph)HS(ph)SQTQGGGSVTKK ddPTM_HeLa_CUDC101_4h_R1 2 ASSHSSQTQGGGSVTKK 17 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.047)S(0.935)HS(0.968)S(0.048)QT(0.001)QGGGSVTKK;AS(0.023)S(0.978)HS(0.969)S(0.028)QT(0.002)QGGGSVTKK ; 106.7 0.00073078 73883000 18504.7 6185.5 10307.4 9997.5 19806.4 16167.2 20093.7 10176.7 17080.4 14343.5 TRUE FALSE FALSE 16335.60712 6376.067923 10864.64922 10405.24126 18345.32133 15858.8376 20868.72074 11335.17439 16376.33868 14258.18422 1.145700382 0.44718653 0.761993887 0.729773238 1.286652006 1.112262077 1.463631021 0.794994244 1.148557097 1 13.79950265 -5.734264491 24.99977687 0.971846744 1.182036496 0.173759255 0.261736641 380.6877217 350214.9965 0.039753197 0.079490605 1.84E-06 5.734264491 0.210189752 QSSCGK(ac)FQTK ddPTM_HeLa_CUDC101_4h_R1 2 QSSCGKFQTK 10 1 Q9GZR7-2;Q9GZR7 Q9GZR7-2 DDX24 ATP-dependent RNA helicase DDX24 0 1 ; QSSCGK(1)FQTK;QSSCGK(1)FQTK 166.29 0.00046417 21393300 4663.3 7037.2 7129.3 6623.4 6392.6 6225.7 5628.5 5351.8 5303.3 2636.9 FALSE TRUE FALSE 4116.675043 7254.007791 7514.731523 6893.530881 5921.030634 6106.955145 5845.59313 5961.027279 5084.695729 2621.215602 1.570521342 2.767421263 2.866887988 2.629898463 2.2588873 2.329817945 2.230107713 2.274146116 1.939823541 1 11.35602031 -7.470792127 2.775276845 1.224770249 2.474720044 0.63051992 0.326229846 0.083538329 1.247425335 0.054050307 0.059610156 3.38E-08 7.470792127 1.249949795 KRCS(ph)EELVK ddPTM_HeLa_CUDC101_4h_R1 1 KRCSEELVK 9 2 Q96JM4-2;Q96JM4 Q96JM4-2 LRRIQ1 Leucine-rich repeat and IQ domain-containing protein 1 1 0 KRCS(1)EELVK 57.174 0.037834 30540000 7271.8 8980 8367.4 9191 5205.1 5755.6 6465.6 6438.9 6680.1 7396.5 TRUE FALSE FALSE 6419.410627 9256.663156 8819.766954 9565.848707 4821.130143 5645.821519 6714.980358 7171.878349 6404.743451 7352.505289 0.873091603 1.258980822 1.199559416 1.30103255 0.655712571 0.767877247 0.913291469 0.97543328 0.871096748 1 12.8440202 -5.734260223 24.99716831 1.009435736 0.829865325 0.303895536 0.168400386 305.1628722 280662.3273 0.027239134 0.054467388 1.84E-06 5.734260223 -0.179570412 ASTTSLSGS(ph)DS(ph)ETEGK ddPTM_HeLa_CUDC101_4h_R1 1 ASTTSLSGSDSETEGK 16 0 Q8N1G2;Q5T7F5 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 2 0 AS(0.003)T(0.028)T(0.245)S(0.005)LS(0.154)GS(0.883)DS(0.68)ET(0.002)EGK 128.81 0.0047304 4705500 4596.1 3762.1 4179.5 4140.2 3672.5 3621.5 3151 2771.3 4219.4 4301.7 TRUE FALSE FALSE 4057.352125 3878.005842 4405.456412 4309.055251 3401.586992 3552.425921 3272.535126 3086.77359 4045.474546 4276.113297 0.948841119 0.906899694 1.030247822 1.007703714 0.795485703 0.830760477 0.765305991 0.721864314 0.946063461 1 12.06208436 -5.734155964 8.32109665 0.976064383 0.780592 0.840134158 0.041646394 0.066768057 17.25029844 0.006349303 0.012571569 1.84E-06 5.734155964 -0.195472383 QSSGASSSSFSSSR ddPTM_HeLa_CUDC101_4h_R1 2 QSSGASSSSFSSSR 14 0 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;F6S8Q4;A0A2R8Y645;O00571;O00571-2;A0A2U3TZJ9;A0A0D9SFB3;A0A0D9SF53;A0A0D9SG12;A0A2R8YF78;A0A2R8YDT5;A0A2R8Y7T2;A0A0J9YVQ7;A0A087WVZ1 A0A2R8Y5G6 DDX3X ATP-dependent RNA helicase DDX3X 0 0 ; ; 152 0.0010007 1480420 0 0 157.78 0 66.611 65.63 278.973 151.57 0 0 FALSE FALSE TRUE 0 0 166.3100641 0 61.69723924 64.3782171 289.7330821 168.8241161 0 0 0 (ac)AS(ph)EDNRVPSPPPTGDDGGGGGR ddPTM_HeLa_CUDC101_4h_R1 1 ASEDNRVPSPPPTGDDGGGGGR 22 1 E9PEM5;A0A494C1L5;P50851-2;P50851;A0A494C0R9 E9PEM5 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 0 AS(0.972)EDNRVPS(0.028)PPPTGDDGGGGGR 90.476 3.87E-07 22257000 0 0 0 0 57.659 0 126.72 0 0 56.546 TRUE FALSE FALSE 0 0 0 0 53.40561044 0 131.6076328 0 0 56.20966188 0 0 0 0 0.950114423 0 2.341370299 0 0 1 5.812746231 -5.733324294 24.91259327 0.395833255 0.872559125 0.127812428 0.695311278 409.7019143 363032.0181 0.102830379 0.205626936 1.85E-06 5.733324294 0.47672587 ADAPDAGAQS(ph)DSELPSYHQNDVSLDR ddPTM_HeLa_CUDC101_4h_R1 4 ADAPDAGAQSDSELPSYHQNDVSLDR 26 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 ADAPDAGAQS(1)DSELPSYHQNDVSLDR;ADAPDAGAQS(0.973)DS(0.027)ELPSYHQNDVSLDR;ADAPDAGAQS(0.921)DS(0.079)ELPSYHQNDVSLDR;ADAPDAGAQS(0.857)DS(0.143)ELPSYHQNDVSLDR ;;; 198.69 5.45E-23 257168000 16762.1 7398.83 6411.42 5591.76 18191.7 14877 13403.8 8627.86 11878.4 9555.5 TRUE FALSE FALSE 14797.27205 7626.779183 6758.040759 5819.816142 16849.73453 14593.24601 13920.78906 9610.020707 11388.76732 9498.663461 1.557826752 0.802931824 0.711472807 0.612698425 1.773905835 1.536347305 1.465552403 1.011723465 1.198986296 1 13.21350881 -5.732292274 24.99987857 1.144512018 1.454605873 0.249039496 0.329637062 355.164354 304627.6678 0.057073724 0.114133017 1.85E-06 5.732292274 0.310093855 RYS(ph)PPIQR ddPTM_HeLa_CUDC101_4h_R1 1 RYSPPIQR 8 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RY(0.001)S(0.999)PPIQR 66.19 0.038867 4720700 759.09 4113.5 934.07 1904.3 783.35 1113 850.99 896.72 1175.8 1576.5 TRUE FALSE FALSE 670.1106209 4240.232059 984.5686496 1981.965585 725.5638312 1091.771379 883.8129694 998.7989801 1127.333026 1567.122908 0.427605657 2.705743141 0.628265112 1.264716108 0.462991018 0.696672465 0.563971699 0.637345658 0.71936478 1 10.61390262 -5.731967041 24.96548817 0.913064409 0.595970477 0.100486285 0.610718834 545.397775 461993.9546 0.091712094 0.183402569 1.85E-06 5.731967041 -0.317093933 SNS(ph)TSSMSSGLPEQDR ddPTM_HeLa_CUDC101_4h_R1 2 SNSTSSMSSGLPEQDR 16 0 P42684-2;P42684-6;P42684-3;P42684 P42684-2 ABL2 Abelson tyrosine-protein kinase 2 1 0 S(0.042)NS(0.478)T(0.478)S(0.002)SMSSGLPEQDR;S(0.001)NS(0.992)T(0.003)S(0.001)S(0.002)MS(0.001)S(0.001)GLPEQDR ; 231.38 4.16E-43 36509000 2322.33 1804.66 2174.61 1660.6 3071.5 3189 2630.8 2232.71 1930.37 2456.75 TRUE FALSE FALSE 2050.109998 1860.259436 2292.175994 1728.326446 2844.921564 3128.175138 2732.270837 2486.872681 1850.799332 2442.137142 0.839473739 0.761734222 0.938594297 0.707710643 1.164931124 1.280917064 1.118803195 1.018318193 0.757860523 1 11.2539285 -5.731940327 24.99494813 0.896561938 1.153473697 0.626794142 0.111646233 122.779029 104031.7344 0.016515493 0.033027129 1.85E-06 5.731940327 0.256911759 SGSSS(ph)PDSEITELKFPSINHD ddPTM_HeLa_CUDC101_4h_R1 3 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 0 S(0.006)GS(0.031)S(0.157)S(0.804)PDS(0.001)EITELKFPSINHD;S(0.086)GS(0.086)S(0.366)S(0.41)PDS(0.051)EITELKFPSINHD;S(0.026)GS(0.035)S(0.158)S(0.71)PDS(0.071)EITELKFPSINHD ;; 203.2 1.58E-19 964711000 8091.6 3652.52 3517.39 3275.78 9807.8 7380.8 6785.5 5926.7 7301.92 6410.3 TRUE FALSE FALSE 7143.114914 3765.049812 3707.550743 3409.380468 9084.298134 7240.023537 7047.219008 6601.371571 7000.931767 6372.171251 1.120986024 0.590858228 0.581834762 0.535042191 1.425620527 1.136194125 1.105936851 1.035968952 1.098672884 1 12.63756932 -5.731224029 24.99982258 0.947367289 1.168092009 0.26392483 0.239831335 341.4997872 282551.2168 0.040041427 0.080074793 1.86E-06 5.731224029 0.22072472 RGS(ph)PTTGFIEQK ddPTM_HeLa_CUDC101_4h_R1 3 RGSPTTGFIEQK 12 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 RGS(0.938)PT(0.036)T(0.026)GFIEQK;RGS(0.998)PT(0.001)T(0.001)GFIEQK;RGS(1)PTTGFIEQK ;; 159.66 0.00026958 97322400 13239.3 11854.7 11454.4 10483.7 11372.5 9059.24 8841.6 10615.1 10208 11006.8 TRUE FALSE FALSE 11687.40932 12219.92926 12073.65951 10911.2706 10533.57333 8886.450091 9182.623474 11823.48008 9787.221919 10941.33106 1.068188985 1.116859474 1.103490923 0.997252577 0.962732347 0.812190952 0.83926018 1.080625383 0.894518397 1 13.41750064 -5.730790244 2.745538487 1.04520368 0.903060271 0.26016537 0.089217957 0.201594685 3.103018112 0.011481114 0.024082133 1.86E-06 5.730790244 -0.142143408 QSSSSTTSQGGVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 QSSSSTTSQGGVKR 14 1 P18615;P18615-3;A0A0A0MT02;A2ABK4;A0A0G2JI50;E9PD43;A0A0A0MSN9;P18615-4 P18615 NELFE Negative elongation factor E 0 1 ; QSSSSTTSQGGVK(1)R;QSSSSTTSQGGVK(1)R 232.5 1.20E-34 740710 0 0 0 0 0 0 78.025 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 81.03445039 0 0 0 0 S(ph)SSVGSSSSYPIS(ph)PAVSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 S(0.88)S(0.044)S(0.076)VGSSSS(0.002)YPIS(0.998)PAVSR 264.01 9.12E-70 182930000 2339.9 2611.3 1946.3 2113.9 3090.1 3029.7 2974 2556.3 2735.7 2217.4 TRUE FALSE FALSE 2065.620469 2691.751058 2051.522865 2200.113979 2862.149479 2971.91352 3088.708176 2847.298859 2622.933288 2204.210806 0.937124736 1.221185855 0.930728975 0.998141363 1.298491719 1.348289153 1.401276215 1.291754333 1.189964808 1 11.10604649 -5.729925532 4.264065405 0.988083326 1.347634871 0.62825365 0.103624852 0.064935314 2.61586422 0.012092672 0.02419835 1.86E-06 5.729925532 0.359551545 EDGRSS(ph)SGPPHETAAPK ddPTM_HeLa_CUDC101_4h_R1 1 EDGRSSSGPPHETAAPK 17 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;C9JQE8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 EDGRS(0.283)S(0.538)S(0.179)GPPHETAAPK 90.758 0.0037234 8571900 1383.2 802.37 829.77 579.94 1695.4 1046.8 1281.6 1139.6 1442.1 1062.6 TRUE FALSE FALSE 1221.063393 827.0900687 874.6298761 603.5924599 1570.33372 1026.834034 1331.031741 1269.327458 1382.656028 1056.279608 1.156003944 0.783021903 0.828028743 0.571432465 1.486664807 0.972123315 1.260113072 1.201696452 1.308986766 1 10.04477607 -5.729717216 24.99999862 0.99930311 1.213858877 0.258034825 0.22689044 267.7895526 211041.6751 0.031733143 0.063461888 1.86E-06 5.729717216 0.214555768 QSVDNVTNPEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 QSVDNVTNPEKR 12 1 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 0 1 QSVDNVTNPEK(1)R 172.13 1.90E-06 1343100 297.75 238.77 228.37 215.44 267.96 294.33 220.43 192.95 212.2 215.16 FALSE TRUE FALSE 262.8481964 246.1262207 240.716373 224.2265744 248.1931247 288.7161456 228.9320589 214.9146481 203.4530262 213.8802188 1.228950475 1.15076664 1.12547282 1.048374533 1.160430479 1.349896439 1.070375093 1.004836489 0.951247513 1 7.740659247 -9.525339826 1.286337268 1.000121886 1.154107525 0.317833573 0.094121769 0.498078879 1.477522438 0.066699501 0.016035071 2.98E-10 9.525339826 0.153985639 NSASATT(ph)PLSGNSSR ddPTM_HeLa_CUDC101_4h_R1 1 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 NSASAT(0.007)T(0.992)PLS(0.001)GNSSR 133.87 0.0028453 25048000 4918.2 4298.1 4089.6 4340.1 4922.3 4451.7 3725.1 1530.2 5327.7 5286.5 TRUE FALSE FALSE 4341.696052 4430.519366 4310.696146 4517.108038 4559.191736 4366.79124 3868.778355 1704.391783 5108.089951 5255.055663 0.826194113 0.843096563 0.82029505 0.859573776 0.867582006 0.83096955 0.736201213 0.324333726 0.972033462 1 12.35949033 -4.148671952 1.473283503 0.895011895 6.10E-16 0.893120802 0.057682424 0.446131496 0.711002829 0.011218425 0.627848495 7.10E-05 4.148671952 -0.895011895 down SAS(ph)EPSLHR ddPTM_HeLa_CUDC101_4h_R1 5 SASEPSLHR 9 0 H7C155;P04049;P04049-2;Q96II5;P10398 H7C155;Q96II5 RAF1;ARAF RAF proto-oncogene serine/threonine-protein kinase;Serine/threonine-protein kinase A-Raf 1 0 S(0.083)AS(0.906)EPS(0.011)LHR;S(0.017)AS(0.983)EPSLHR;S(0.041)AS(0.958)EPSLHR;S(0.242)AS(0.758)EPSLHR;S(0.014)AS(0.986)EPSLHR ;;;; 115.23 0.0048928 163768000 22001.6 13748.9 14728.7 13696.6 23226.1 19154.9 18298.5 16437.5 19374.6 17799.2 TRUE FALSE FALSE 19422.6058 14172.48731 15524.97807 14255.20655 21512.75688 18789.5522 19004.27927 18308.67856 18575.97079 17693.32957 1.097736055 0.801007366 0.877448081 0.805682531 1.215868206 1.061956831 1.074092878 1.034778586 1.049885536 1 14.11091794 -5.729582311 24.99971649 0.997710589 1.092581204 0.241065635 0.11071731 348.5999427 273560.698 0.018323212 0.036643834 1.86E-06 5.729582311 0.094870614 KRQS(ph)PEPSPVTLGR ddPTM_HeLa_CUDC101_4h_R1 1 KRQSPEPSPVTLGR 14 2 Q9NRL2;Q9NRL2-2 Q9NRL2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 0 KRQS(0.998)PEPS(0.002)PVTLGR 54.95 0.036329 23483000 4878.2 4759.3 4578.6 4733.5 4523.2 4539.1 4502.8 3822.2 3802.6 4692.3 TRUE FALSE FALSE 4306.384791 4905.928392 4826.132966 4926.55259 4189.532547 4452.52423 4676.474504 4257.303798 3645.855219 4664.389991 0.923247155 1.051783492 1.034676126 1.05620512 0.898195167 0.954578035 1.002590803 0.912724666 0.781636018 1 12.1874727 -5.72940649 24.99970193 0.981935557 0.947245417 0.032066757 0.079863221 428.499292 334415.2064 0.008270684 0.016540377 1.86E-06 5.72940649 -0.03469014 ILNDLSS(ph)DAPGVPR ddPTM_HeLa_CUDC101_4h_R1 1 ILNDLSSDAPGVPR 14 0 C9JBT4;C9J896;P16220;P16220-1;C9J4L5;H7C3I0;E7EWP8;P16220-3 C9JBT4 CREB1 Cyclic AMP-responsive element-binding protein 1 1 0 ILNDLS(0.226)S(0.774)DAPGVPR 103.77 0.0056866 5311800 978.1 874.3 1097.7 901.91 1415.6 1646.5 1476.2 901.01 857.1 906.71 TRUE FALSE FALSE 863.4486007 901.2361467 1157.044982 938.6937882 1311.174008 1615.095756 1533.137528 1003.577336 821.7699752 901.3168486 0.957985643 0.999910462 1.283727231 1.041469257 1.454731497 1.791928952 1.700997303 1.113456758 0.911743719 1 9.815890549 -5.729086738 3.428805513 1.007573022 1.563486952 0.606108151 0.190471095 0.107361188 2.618432511 0.027205548 0.055409826 1.87E-06 5.729086738 0.55591393 VASEAPLEHKPQVEASS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 VASEAPLEHKPQVEASSPR 19 1 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 0 VASEAPLEHKPQVEAS(0.339)S(0.661)PR 81.884 0.0032102 77806000 1958.9 1450.5 1337.6 1343.2 1975.3 1909.3 1811 1348.4 1761.9 1550.3 TRUE FALSE FALSE 1729.280711 1495.188186 1409.914702 1397.981502 1829.586054 1872.883284 1880.850877 1501.896406 1689.273736 1541.078747 1.122123522 0.970221794 0.914888162 0.907144755 1.187211269 1.215306672 1.220476813 0.974574731 1.096163152 1 10.58972487 -5.7284429 24.99992218 1.030418646 1.159178066 0.349184933 0.093593317 200.393908 151828.3202 0.014731991 0.029462434 1.87E-06 5.7284429 0.12875942 RTDALTSS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 4 RTDALTSSPGR 11 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RTDALTS(0.103)S(0.897)PGR;RTDALTSS(1)PGR;RTDALTS(0.003)S(0.997)PGR;RTDALT(0.002)S(0.127)S(0.87)PGR ;;; 171.62 1.58E-06 1368611000 12446.4 10458.8 9794.3 11090.9 10461.1 10172.5 9490.23 8165.04 10820.9 10541.66 TRUE FALSE FALSE 10987.45186 10781.02323 10323.80948 11543.23484 9689.405494 9978.476511 9856.27135 9094.515149 10374.85792 10478.95774 1.048525257 1.02882591 0.985194305 1.101563259 0.924653552 0.952239408 0.94057745 0.86788356 0.990065824 1 13.35520761 -5.727294905 24.74435824 1.025713023 0.924919787 0.649101462 0.037552263 78.02667934 56545.19342 0.005175813 0.010351163 1.87E-06 5.727294905 -0.100793236 DVDDGSGSPHS(ph)PHQLSSK ddPTM_HeLa_CUDC101_4h_R1 1 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 DVDDGS(0.027)GS(0.163)PHS(0.81)PHQLSSK 114.37 0.00018275 30265000 2930.8 1521.8 1416.3 1257.1 3458.1 2595.4 2652.2 2397.4 2630.4 2232.3 TRUE FALSE FALSE 2587.256067 1568.684854 1492.869462 1308.369972 3203.002853 2545.897069 2754.496242 2670.310325 2521.973799 2219.02218 1.165944212 0.706926171 0.672760045 0.589615545 1.44342985 1.147305823 1.24131082 1.203372526 1.136524827 1 11.11570837 -5.726752808 24.9998897 0.984886779 1.249633664 0.389477546 0.209085392 218.9501102 157804.3652 0.034702036 0.069401638 1.88E-06 5.726752808 0.264746885 QTDFEHR ddPTM_HeLa_CUDC101_4h_R1 1 QTDFEHR 7 0 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 0 0 139.97 0.0016231 0 2080.9 534.22 2515.9 2595.4 1150.6 1193.6 1660.8 536.17 2653 3031.4 FALSE FALSE TRUE 1836.980056 550.678685 2651.917164 2701.25163 1065.72253 1170.834069 1724.857612 597.2054255 2543.642217 3013.369098 0.60961004 0.182745182 0.880050561 0.896422424 0.353664784 0.388546517 0.572401706 0.198185289 0.844119036 1 11.55716168 -13.52287874 0.111811025 2.666302135 0.216464343 0.36506142 0.229168955 73.46124449 0.601600286 27.81188989 1.376279005 3.00E-14 13.52287874 -2.449837792 SIPAGAEPGEKGS(ph)AR ddPTM_HeLa_CUDC101_4h_R1 4 SIPAGAEPGEKGSAR 15 1 A6NGP5;Q9H910;Q9H910-3;H3BU16;Q9H910-2 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 0 SIPAGAEPGEKGS(1)AR;SIPAGAEPGEKGS(1)AR;SIPAGAEPGEKGS(1)AR;SIPAGAEPGEKGS(1)AR ;;; 192.23 5.80E-11 143276000 14647.9 11501.33 12775.68 13097.04 13602.87 12993.77 11721.6 4873.25 14070.7 14066.9 TRUE FALSE FALSE 12930.89537 11855.67234 13466.37191 13631.1939 12599.41338 12745.93549 12173.70604 5428.001082 13490.69979 13983.22945 0.92474313 0.847849374 0.963037326 0.974824446 0.901037448 0.911515865 0.870593312 0.388179362 0.964777116 1 13.77140997 -4.14792995 2.129529255 0.949502687 0.111975389 0.933852528 0.043314889 0.200493625 0.769788769 0.007133685 0.355084771 7.11E-05 4.14792995 -0.837527299 down ALRPGDLPPS(ph)PDDVKR ddPTM_HeLa_CUDC101_4h_R1 1 ALRPGDLPPSPDDVKR 16 2 O75382-3;O75382-2;O75382;A0A1W2PPI7;O75382-4 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 ALRPGDLPPS(1)PDDVKR 76.176 0.018623 9442800 1809.5 1226.9 1521.5 1329.6 1204.4 1095 999.61 955.34 1366.2 1206.7 TRUE FALSE FALSE 1597.393153 1264.699335 1603.756892 1383.826835 1115.553812 1074.114699 1038.165293 1064.092044 1309.884658 1199.522495 1.331690869 1.054335655 1.336996096 1.15364809 0.929998242 0.895451902 0.865482137 0.887096364 1.09200508 1 10.2282445 -5.72640531 4.189115228 1.167263129 0.886496558 0.626331152 0.101442765 0.138150793 5.277102635 0.019813071 0.03975802 1.88E-06 5.72640531 -0.280766571 QTDVGITHFR ddPTM_HeLa_CUDC101_4h_R1 1 QTDVGITHFR 10 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 81.709 0.0026998 0 2963.3 2275.6 2302 2250.5 2196.3 2198.7 2213.1 2068.2 2619.3 2284.3 FALSE FALSE TRUE 2615.946466 2345.708539 2426.453083 2342.285117 2034.283325 2156.763461 2298.460008 2303.635528 2511.331345 2270.712882 1.152037533 1.033027362 1.068586479 1.031519721 0.895878709 0.949817777 1.012219566 1.014498815 1.105966045 1 11.14892958 -5.99074216 23.85874395 1.069014149 0.969167488 0.499629812 0.048959755 101.8408831 262454.0507 0.009566441 0.01732 1.02E-06 5.99074216 -0.099846661 SNSQSDSHDEEVS(ph)PTPPNPVVK ddPTM_HeLa_CUDC101_4h_R1 3 SNSQSDSHDEEVSPTPPNPVVK 22 0 C9J4C2;C9IZL8;C9JR00;C9JSK5;P31321 C9J4C2 PRKAR1B cAMP-dependent protein kinase type I-beta regulatory subunit 1 0 SNSQSDSHDEEVS(0.977)PT(0.023)PPNPVVK;SNSQSDSHDEEVS(0.998)PT(0.002)PPNPVVK;SNSQSDSHDEEVS(0.96)PT(0.04)PPNPVVK ;; 118.15 1.80E-06 35308000 12316.3 6546 6145.4 5386 14454.9 11165.8 10081.6 9172.3 10038.7 9522 TRUE FALSE FALSE 10872.60198 6747.674501 6477.638913 5605.66436 13388.59083 10952.83097 10470.45069 10216.43756 9624.900537 9465.362721 1.148672513 0.71288071 0.684351895 0.592229218 1.414482595 1.157148573 1.10618589 1.079349821 1.016854908 1 13.20844208 -5.726176502 24.99996933 0.98003531 1.1810593 0.297299523 0.202582429 279.517935 198165.696 0.034213912 0.068425752 1.88E-06 5.726176502 0.20102399 GFNGCDS(ph)PEPDGEDSLEQSPLLEDK ddPTM_HeLa_CUDC101_4h_R1 1 GFNGCDSPEPDGEDSLEQSPLLEDK 25 0 Q14814-4;Q14814;Q05BX2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 GFNGCDS(0.964)PEPDGEDS(0.036)LEQSPLLEDK 128.94 1.21E-10 3697000 2334 1661.3 1871.6 1637 1890.7 1563.2 1403 1530.3 1910.1 1754.4 TRUE FALSE FALSE 2060.412058 1712.482684 1972.784357 1703.763936 1751.226828 1533.384564 1457.11418 1704.503166 1831.36487 1743.964751 1.181452812 0.981947991 1.131206555 0.976948608 1.004164119 0.87925204 0.835518137 0.977372487 1.05011576 1 10.76815517 -5.725625858 1.406893839 1.081568988 0.892319666 0.504790568 0.068820107 0.266431703 1.053865084 0.012929205 0.033701878 1.88E-06 5.725625858 -0.189249322 SCDEPLT(ph)PPPHS(ph)PTSMLQLIHDPVSPR ddPTM_HeLa_CUDC101_4h_R1 1 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 I3VM54;Q9Y2K7-3;Q9Y2K7;Q9Y2K7-4;Q9Y2K7-5;Q9Y2K7-2 I3VM54 KDM2A Lysine-specific demethylase 2A 2 0 S(0.025)CDEPLT(0.972)PPPHS(0.872)PT(0.111)S(0.016)MLQLIHDPVS(0.003)PR 53.481 0.018692 6526300 1216 761.64 760.74 915.34 1144.2 1336.6 1154.4 814.11 893.46 755.94 TRUE FALSE FALSE 1073.462323 785.1052256 801.8679055 952.6715216 1059.794646 1311.106582 1198.925595 906.7849917 856.6312006 751.4436353 1.42853339 1.044795895 1.067103197 1.267788397 1.410344829 1.744783668 1.595496373 1.206723897 1.139980646 1 9.553521083 -5.725606624 3.052790659 1.184226672 1.528602818 0.481733166 0.170006374 0.209488913 3.997257561 0.030718229 0.063547766 1.88E-06 5.725606624 0.344376146 QTESTSFLEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 QTESTSFLEKK 11 1 G3V5Z7;P60900-3;P60900-2;P60900;G3V295 G3V5Z7 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 0 1 ; QTESTSFLEK(1)K;QTESTSFLEK(1)K 173.72 0.00019575 2384200 1069.7 905.83 643.47 537.56 1154.65 1001.85 797.29 1044.23 974.84 929.7 FALSE TRUE FALSE 944.3113876 933.7375486 678.2579346 559.4840203 1069.47377 982.7413804 828.0417424 1163.100922 934.6566826 924.1701031 1.021793915 1.010352472 0.733910275 0.605390738 1.157226106 1.063377161 0.895984126 1.258535543 1.011347023 1 9.852014609 ASEDTTSGS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 4 ASEDTTSGSPPK 12 0 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 1 0 ASEDTT(0.003)S(0.005)GS(0.992)PPK;ASEDTT(0.001)SGS(0.999)PPK;ASEDTTS(0.002)GS(0.998)PPK;ASEDT(0.001)T(0.003)S(0.015)GS(0.981)PPK ;;; 179.67 1.01E-07 318672000 15326.9 12889.4 14238.3 14157.5 13297.1 12643.5 12467.7 11295.2 12747.9 13448.8 TRUE FALSE FALSE 13530.30402 13286.50714 15008.06557 14734.90404 12316.19942 12402.3463 12948.58337 12580.99991 12222.42617 13368.80594 1.012080217 0.993843968 1.122618253 1.102185499 0.921263984 0.927707857 0.968566933 0.941071324 0.914249651 1 13.70658299 -5.725396337 24.99960156 1.020621913 0.940864602 0.355627364 0.05559765 143.1850815 99313.10343 0.007116838 0.014233344 1.88E-06 5.725396337 -0.079757311 SSTPS(ph)HGQTTATEPTPAQK ddPTM_HeLa_CUDC101_4h_R1 1 SSTPSHGQTTATEPTPAQK 19 0 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 S(0.005)S(0.005)T(0.156)PS(0.812)HGQT(0.021)T(0.001)ATEPTPAQK 146.67 8.57E-08 0 3956.5 2078.1 2116.7 1867.6 4425.7 3544.5 3307.3 2964.7 3452.9 2945.3 TRUE FALSE FALSE 3492.725068 2142.123798 2231.135205 1943.7688 4099.224928 3476.894568 3434.863669 3302.189464 3310.570001 2927.781225 1.192959719 0.731654326 0.762056668 0.663905071 1.400113128 1.187552724 1.173196836 1.127881222 1.130743641 1 11.51559204 -5.725193763 24.99999274 1.009162689 1.21621272 0.33143872 0.187140747 241.5755755 166622.7838 0.031361963 0.062722447 1.88E-06 5.725193763 0.207050031 ILSQS(ph)TDSLNMR ddPTM_HeLa_CUDC101_4h_R1 3 ILSQSTDSLNMR 12 0 Q92974-2;Q92974;V9GYM8;A0A5F9ZI21;Q92974-3;V9GYF5;V9GYG5;V9GZ14 Q92974-2 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 ILSQS(0.463)T(0.421)DS(0.116)LNMR;ILSQS(0.989)T(0.009)DS(0.003)LNMR;ILSQS(0.92)T(0.078)DS(0.002)LNMR ;; 201.72 1.63E-16 325572600 2560.59 2311.11 2088.05 2233.46 3256 2963.15 2998.57 3087.22 1971.9 2351.72 TRUE FALSE FALSE 2260.441522 2382.31256 2200.936299 2324.550153 3015.811367 2906.632851 3114.225849 3438.656646 1890.617447 2337.731865 0.966937892 1.019070063 0.941483637 0.994361324 1.290058716 1.243355962 1.332156992 1.47093715 0.808740077 1 11.19089375 -5.724761538 3.646200695 0.982754444 1.336801109 0.848760198 0.078078842 0.049243221 1.366397831 0.008218401 0.016672153 1.88E-06 5.724761538 0.354046665 QTLSIYQALK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 QTLSIYQALKK 11 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 1 QTLSIYQALK(1)K 118.48 0.0016449 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 QTNPSAMEVEEDDPVPEIR ddPTM_HeLa_CUDC101_4h_R1 6 QTNPSAMEVEEDDPVPEIR 19 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ;;;;; ;;;;; 254.94 1.26E-56 37798600 7325.07 6792.32 6324.18 6267.35 7369.99 6308.05 6054 5846.49 7420.97 8178.53 FALSE FALSE TRUE 6466.436399 7001.583328 6666.0843 6522.959623 6826.320521 6187.734456 6287.504808 6512.030789 7115.074476 8129.88374 0.795391005 0.861215677 0.819948294 0.802343531 0.839657828 0.761109833 0.773381885 0.800999251 0.875175427 1 12.98901901 -10.20662826 0.361898003 1.165411771 0.791714095 0.461963781 0.047975854 1.263833006 0.127748328 0.202481538 0.009960056 6.21E-11 10.20662826 -0.373697676 SHSESASPSALSSS(ph)PNNLSPTGWSQPK ddPTM_HeLa_CUDC101_4h_R1 1 SHSESASPSALSSSPNNLSPTGWSQPK 27 0 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 SHSESASPSALS(0.013)S(0.058)S(0.872)PNNLS(0.052)PT(0.004)GWSQPK 129.26 3.10E-11 9742800 2409.3 982.34 727.06 664.12 2741.1 2166.1 1893.4 1395.9 1818 1460.1 TRUE FALSE FALSE 2126.885506 1012.604731 766.3670628 691.2056842 2538.894514 2124.785251 1966.429072 1554.803614 1743.061271 1451.41526 1.465387312 0.697667138 0.528013646 0.476228756 1.749254389 1.463940272 1.354835605 1.071232786 1.200939055 1 10.50324463 -5.724547278 24.99999752 1.077256895 1.409754144 0.264511449 0.348527458 282.914102 191715.8695 0.060116913 0.120231249 1.89E-06 5.724547278 0.332497249 SS(ph)SPVGLAK ddPTM_HeLa_CUDC101_4h_R1 2 SSSPVGLAK 9 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(0.182)S(0.409)S(0.409)PVGLAK;S(0.041)S(0.48)S(0.48)PVGLAK ; 126.39 0.0041597 475100000 16392.2 14540.9 14058.3 14584.1 15447.6 14760.2 13945.1 13009.6 15206.7 15044.9 TRUE FALSE FALSE 14470.73116 14988.88789 14818.33422 15178.90264 14308.06132 14478.67378 14482.96718 14490.56028 14579.87339 14955.41227 0.967591592 1.002238362 0.990834218 1.014943779 0.956714604 0.968122678 0.968409758 0.968917474 0.974889433 1 13.86838006 -5.724515236 24.99995581 0.988203576 0.965930424 0.471152222 0.013285408 160.2393026 108491.4069 0.002278363 0.004556635 1.89E-06 5.724515236 -0.022273153 RFPTDYASTS(ph)EDEFGSNR ddPTM_HeLa_CUDC101_4h_R1 2 RFPTDYASTSEDEFGSNR 18 1 H0Y2V6;Q5SW79;Q5SW79-3 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 RFPTDYAST(0.252)S(0.746)EDEFGS(0.002)NR;RFPTDYAST(0.046)S(0.954)EDEFGSNR ; 148.44 3.77E-05 14644900 2089.33 1479.7 1855.09 1597.05 1757.78 1629.31 1535.37 1379.85 2021.98 1864.18 TRUE FALSE FALSE 1844.421905 1525.287803 1955.381777 1662.184602 1628.112071 1598.233626 1594.589735 1536.926546 1938.633129 1853.091774 0.995321403 0.823104297 1.055199642 0.896979105 0.87859225 0.862468685 0.860502301 0.829385014 1.046161423 1 10.85571862 -5.724190552 0.3933885 1.005898158 0.797457245 0.525540422 0.058745276 1.186941244 0.270768913 0.019316563 0.100877785 1.89E-06 5.724190552 -0.208440913 GVQKPAGPST(ph)SPDGNSR ddPTM_HeLa_CUDC101_4h_R1 1 GVQKPAGPSTSPDGNSR 17 1 Q86YV5 Q86YV5 SGK223 Tyrosine-protein kinase SgK223 1 0 GVQKPAGPS(0.14)T(0.5)S(0.345)PDGNS(0.015)R 70.555 0.029011 17944000 3334 2669.6 3038.3 3327.9 2806.8 2757.3 2867.5 2662.2 3104.6 3151.3 TRUE FALSE FALSE 2943.193574 2751.847212 3202.559688 3463.626146 2599.747956 2704.709096 2978.100436 2965.254087 2976.627074 3132.555927 0.939550208 0.878467065 1.02234717 1.10568693 0.829912703 0.863419252 0.950693461 0.946592545 0.950223122 1 11.61312455 -5.723795082 24.99998571 0.975671513 0.898997708 0.288591342 0.064847484 195.630146 129919.1116 0.00980998 0.01961962 1.89E-06 5.723795082 -0.076673805 (ac)AS(ph)GVAVSDGVIK ddPTM_HeLa_CUDC101_4h_R1 17 ASGVAVSDGVIK 12 0 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 1 0 AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(0.931)GVAVS(0.069)DGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(0.999)GVAVS(0.001)DGVIK;AS(0.998)GVAVS(0.002)DGVIK;AS(0.998)GVAVS(0.002)DGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK ;;;;;;;;;;;;;;;; 111.65 7.98E-17 7166483100 124388.22 89053.38 104250.57 94968.99 121240.1 125948.21 116593.71 72482.23 90066.98 103585.56 TRUE FALSE FALSE 109807.6214 91797.00908 109886.6712 98842.2359 112296.4594 123545.9577 121090.7685 80733.31408 86354.38096 102969.4285 1.066409934 0.891497704 1.067177635 0.959918272 1.090580583 1.199831441 1.175987575 0.784051298 0.838640966 1 16.65185654 -5.723683987 24.98664265 1.018954862 1.080512319 0.028867682 0.129816621 394.8248968 261294.739 0.016056908 0.03211328 1.89E-06 5.723683987 0.061557457 DVDDGSGS(ph)PHS(ph)PHQLSSK ddPTM_HeLa_CUDC101_4h_R1 1 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 2 0 DVDDGS(0.348)GS(0.652)PHS(1)PHQLSSK 223.15 4.46E-32 3411000 5052 2929.1 2670.1 3094.7 5143.3 4458.5 3900.6 3872.3 4204.5 4045.8 TRUE FALSE FALSE 4459.812218 3019.342099 2814.453683 3220.915242 4763.889006 4373.461541 4051.047449 4313.10698 4031.18873 4021.735402 1.108927309 0.750756029 0.699810754 0.800876965 1.184535662 1.08745631 1.007288408 1.072449216 1.00235056 1 11.97360245 -5.723555966 24.99998956 0.982616096 1.082137947 0.177174116 0.141288123 380.6993666 251228.9864 0.024964252 0.049927659 1.89E-06 5.723555966 0.099521851 TAS(ph)PLPLR ddPTM_HeLa_CUDC101_4h_R1 1 TASPLPLR 8 0 Q9HCK8-2;Q9HCK8;H0YJG4 Q9HCK8-2 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 0 T(0.005)AS(0.995)PLPLR 76.17 0.033103 7041000 1101.2 678.98 608.35 723.57 538.92 576.57 383.59 649.1 565.15 286.45 TRUE FALSE FALSE 972.1190053 699.898569 641.2392412 753.0803121 499.1649453 565.5728879 398.3851948 722.9909202 541.8542778 284.7461827 3.413984329 2.457973492 2.251967823 2.644742434 1.753017163 1.986235189 1.399088799 2.539071511 1.902937812 1 8.153532691 -5.723406064 24.9739439 2.233869478 1.88696866 0.069417973 0.62729978 583.359182 383050.3414 0.135460852 0.270917154 1.89E-06 5.723406064 -0.346900818 KPS(ph)PQPSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 KPSPQPSSPR 10 1 G3V5E1;O75909-1;O75909;O75909-4 G3V5E1 CCNK Cyclin-K 2 0 KPS(0.945)PQPS(0.06)S(0.995)PR;KPS(1)PQPS(0.01)S(0.991)PR ; 154.23 0.0004002 147843000 12960.5 11086.5 12252.9 12043.6 12002.2 10945.3 11358.5 9904 12731 12186.9 TRUE FALSE FALSE 11441.28984 11428.06192 12915.32884 12534.79006 11116.82162 10736.53664 11796.60115 11031.43133 12206.22279 12114.41178 0.944436267 0.943344352 1.066112749 1.034700677 0.917652613 0.886261491 0.973765905 0.910603959 1.007578661 1 13.56443674 -5.723380246 24.95904782 0.982120503 0.923205598 0.413186516 0.042215772 167.8011247 110042.562 0.006663115 0.013326029 1.89E-06 5.723380246 -0.058914905 GLS(ph)SAGGGSPHREDAQPEHSASAR ddPTM_HeLa_CUDC101_4h_R1 3 GLSSAGGGSPHREDAQPEHSASAR 24 1 Q92994-9;Q92994-3;Q92994-7;Q92994-8;Q92994-5;Q92994 Q92994-9 BRF1 Transcription factor IIIB 90 kDa subunit 1 0 GLS(0.442)S(0.442)AGGGS(0.116)PHREDAQPEHSASAR;GLS(0.462)S(0.462)AGGGS(0.076)PHREDAQPEHSASAR;GLS(0.36)S(0.36)AGGGS(0.279)PHREDAQPEHSASAR ;; 47.728 0.023703 24077900 5865.6 2486.06 2512.23 2367.41 6660.6 5472.5 4886.4 3871.69 5207.9 4282.7 TRUE FALSE FALSE 5178.04326 2562.652562 2648.048753 2463.963213 6169.260808 5368.12118 5074.870085 4312.42754 4993.228158 4257.22631 1.216295043 0.601953567 0.622012682 0.578771959 1.449126816 1.260943344 1.192060209 1.012966478 1.172882951 1 12.05569807 -5.723289613 24.99942873 0.99011362 1.228449258 0.259651528 0.252495819 266.5971863 174699.0516 0.042217289 0.084433251 1.89E-06 5.723289613 0.238335638 QTVAVGVIK ddPTM_HeLa_CUDC101_4h_R1 2 QTVAVGVIK 9 0 Q5VTE0;P68104;A0A087WVQ9;A0A2U3TZH3;Q05639 Q5VTE0;A0A2U3TZH3 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 0 0 ; ; 143.03 0.016432 14703800 18829.9 13696.1 9826.3 13227.2 12415.6 12735.7 11621.3 11538.3 11576.4 7548.9 FALSE FALSE TRUE 16622.68767 14118.06061 10357.5395 13766.66239 11499.72592 12492.78774 12069.53743 12851.77343 11099.21589 7503.998807 2.21517728 1.881404964 1.380269343 1.834576836 1.532479711 1.664817394 1.608414093 1.712656647 1.479106831 1 12.87344388 -9.570462338 1.367889313 1.002541056 1.779002876 0.296997321 0.258092984 0.25771078 0.868904606 0.182106383 0.043303055 2.69E-10 9.570462338 0.77646182 QTVAVGVIK(ac)AVDKK ddPTM_HeLa_CUDC101_4h_R1 2 QTVAVGVIKAVDKK 14 2 Q5VTE0;P68104;A0A087WVQ9 Q5VTE0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 0 1 ; QTVAVGVIK(1)AVDKK;QTVAVGVIK(1)AVDKK 157.37 0.00024168 2637350 546.72 517.12 549.14 689.07 623.61 527.08 622.726 603.76 831.19 605.81 FALSE TRUE FALSE 482.6343104 533.0518543 578.8281695 717.173253 577.6075327 517.0268272 646.7447504 672.4895979 796.9279964 602.2066152 0.801443057 0.885164395 0.961178697 1.190908959 0.959151756 0.858553882 1.07395823 1.116709085 1.323346467 1 9.234114746 -6.519001932 22.21056862 0.903043077 1.032079838 0 0.163177865 43.24782018 247770.8739 0.017519334 0.025159629 3.03E-07 6.519001932 0.129036761 QTVDK(ac)VMGIPK ddPTM_HeLa_CUDC101_4h_R1 2 QTVDKVMGIPK 11 1 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 0 1 ; QTVDK(1)VMGIPK;QTVDK(1)VMGIPK 147.28 0.00013996 2154750 1108.89 1381.65 1012.32 1457.22 1264.76 1370.37 1365.59 912.06 600.31 889.92 FALSE TRUE FALSE 978.9075952 1424.216999 1067.049081 1516.65173 1171.461175 1344.232475 1418.261264 1015.885224 575.5649677 884.6267163 1.10657702 1.60996381 1.206213945 1.714453907 1.324243495 1.519547681 1.603231326 1.148377282 0.650630325 1 9.788925003 -7.380307425 5.258458014 1.046359732 1.451079184 0.544420937 0.212169533 0.115035945 4.497408253 0.026855405 0.030535109 4.17E-08 7.380307425 0.404719452 QTVGTK(ac)QPK ddPTM_HeLa_CUDC101_4h_R1 2 QTVGTKQPK 9 1 A0A669KBI3;F5GXF9;P51825;P51825-3;P51825-2 A0A669KBI3 AFF1 AF4/FMR2 family member 1 0 1 ; QTVGTK(1)QPK;QTVGTK(1)QPK 151.22 0.0015555 7187900 5435.3 4727.7 4439.8 6435.1 5412.9 6161 7130.2 5378.3 2350.59 2028.86 FALSE TRUE FALSE 4798.182373 4873.354833 4679.829018 6697.551193 5013.601151 6043.48919 7405.214202 5990.543932 2253.697685 2016.79225 2.379115832 2.416389111 2.320431872 3.320892963 2.485928409 2.996584893 3.67177839 2.970332681 1.117466454 1 10.97784676 -8.722847967 0.20987534 3.02E-21 3.58330629 0.859784171 0.306958128 1.337454497 0.124574718 1.477969428 0.514150403 1.89E-09 8.722847967 3.58330629 NINPSTANS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 NINPSTANSPK 11 0 P46937-6;P46937-7;P46937;P46937-9;H0YCI3;P46937-4 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 NINPS(0.202)T(0.202)ANS(0.595)PK 108.66 0.0073776 31087000 4526.5 4190.3 4710.4 4239.8 4204.4 4072.2 3047.9 1609.1 4760.7 4758 TRUE FALSE FALSE 3995.910532 4319.398176 4965.058472 4412.71737 3894.249788 3994.52957 3165.458524 1792.27344 4564.461931 4729.699204 0.844855108 0.91325008 1.049761995 0.932980551 0.823360983 0.844563131 0.669272693 0.378940259 0.965063894 1 12.20753272 -4.14686267 0.99510114 0.931962743 1.25E-13 0.898544883 0.058839963 0.629212821 0.412476504 0.01121169 0.658682824 7.13E-05 4.14686267 -0.931962743 down (ac)AADVSVTHRPPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 AADVSVTHRPPLSPK 15 1 A0A087WZ13;Q8IY67-2;Q8IY67;Q8IY67-3 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 AADVSVT(0.006)HRPPLS(0.993)PK 47 0.018178 275920000 9577.6 5554.6 4533.9 4863 10894 9074.6 8909.1 8052.6 9063.1 7705.8 TRUE FALSE FALSE 8454.928247 5725.730642 4779.016348 5061.33416 10090.37132 8901.517124 9252.726971 8969.275434 8689.515182 7659.965559 1.103781496 0.747487779 0.623895279 0.660751556 1.317286775 1.162083179 1.207933234 1.170928951 1.13440656 1 12.90312219 -5.722630468 24.99990849 0.96532988 1.210336659 0.412884269 0.179188318 180.348953 116176.2466 0.029978218 0.059955612 1.89E-06 5.722630468 0.245006778 SNSSSEAVLGQEELS(ph)AQAK ddPTM_HeLa_CUDC101_4h_R1 1 SNSSSEAVLGQEELSAQAK 19 0 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5;Q9BXF6 RAB11FIP5 Rab11 family-interacting protein 5 1 0 SNS(0.007)S(0.342)S(0.105)EAVLGQEELS(0.546)AQAK 185.25 2.20E-11 61189000 3538.7 3522.1 3033.8 3248.3 4196.1 4044.1 3567.1 3961.8 3455.2 3579.6 TRUE FALSE FALSE 3123.89895 3630.611726 3197.816405 3380.779714 3886.562063 3966.96553 3704.684242 4412.795298 3312.775194 3558.30838 0.877916869 1.020319584 0.898690069 0.95010869 1.092249925 1.114845906 1.041136362 1.240138523 0.930997215 1 11.79697583 -5.721668131 3.961987152 0.943880198 1.120025107 0.673414163 0.060241565 0.110126587 3.653988896 0.009564333 0.019303283 1.90E-06 5.721668131 0.17614491 QVAPEK(ac)PVK ddPTM_HeLa_CUDC101_4h_R1 2 QVAPEKPVK 9 1 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 1 ; QVAPEK(1)PVK;QVAPEK(1)PVK 145.9 0.0015255 27525000 16522.6 11616.6 12234.2 13149.5 13399 12490.9 12765.8 11428 10954.6 14955.8 FALSE TRUE FALSE 14585.84587 11974.49368 12895.61786 13685.79345 12410.58246 12252.65689 13258.18118 12728.91733 10503.04675 14866.84224 0.981099123 0.805449704 0.867407998 0.920558194 0.834782684 0.824160013 0.891795377 0.85619509 0.706474622 1 13.85981063 -7.331028467 7.224211048 0.991409636 0.859318435 0 0.095375967 0.083049481 7.561647121 0.005335742 0.006092236 4.67E-08 7.331028467 -0.1320912 SLS(ph)SPPSSK ddPTM_HeLa_CUDC101_4h_R1 4 SLSSPPSSK 9 0 Q5VW31;O00712;O00712-4;A0A1B0GW37;U3KQE8;A0A0A0MRX8;A0A1B0GU97;A0A2R8Y7V8;Q5VW30;Q5VW27;A0A1B0GWI9;A0A1B0GWJ4;A0A1B0GWB8;A0A1B0GVN4;Q5VW26;O00712-5;O00712-6 Q5VW31 NFIB Nuclear factor 1 B-type;Nuclear factor 1 1 0 S(0.016)LS(0.912)S(0.072)PPSSK;SLS(0.422)S(0.422)PPS(0.153)S(0.004)K;S(0.026)LS(0.485)S(0.485)PPS(0.004)SK;S(0.027)LS(0.593)S(0.376)PPS(0.004)SK ;;; 134.57 0.0025924 284058000 28650.8 25035.7 25518.2 23370.9 23402.7 19434.7 18262.5 17611.1 27032.6 27736.4 TRUE FALSE FALSE 25292.39666 25807.02024 26897.79108 24324.06632 21676.32945 19064.01548 18966.89074 19615.87644 25918.30479 27571.42266 0.917341008 0.936006116 0.975567761 0.882220211 0.786188283 0.691441124 0.687918465 0.711456811 0.940042344 1 14.75088609 -5.721295221 1.684727534 0.95921249 0.693147281 0.95647417 0.024145348 0.066902389 0.383822742 0.005213435 0.012549531 1.90E-06 5.721295221 -0.266065209 QVELALWDTAGQEDYDR ddPTM_HeLa_CUDC101_4h_R1 2 QVELALWDTAGQEDYDR 17 0 Q5JR06;Q5JR07;E9PN11;C9JNR4;E9PQH6;C9JX21;Q5JR08;Q5JR05;U3KQA9;U3KQV3;P61586;P08134;P62745 Q5JR06 RHOC;RHOA;RHOB Transforming protein RhoA;Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB 0 0 ; ; 164.15 0.00012653 20021900 2712.6 2842.4 2241.3 2131.5 2566.3 2788.3 2446.1 1971.11 1805.88 2494.5 FALSE FALSE TRUE 2394.63314 2929.970975 2362.471458 2218.431783 2376.989162 2735.117823 2540.446896 2195.493195 1731.440862 2479.662603 0.965709261 1.181600663 0.952739076 0.894650659 0.958593786 1.103020153 1.024513131 0.88539997 0.698256634 1 11.27592812 DSLVEHDEEFVQRQDS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 DSLVEHDEEFVQRQDSPR 18 1 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 DSLVEHDEEFVQRQDS(1)PR 59.68 0.019898 7356100 3451.3 2619.3 2657.2 2380.6 3726.3 3592.2 2787.9 2902.6 3246.6 3001.1 TRUE FALSE FALSE 3046.743846 2699.997528 2800.85627 2477.691158 3451.418273 3523.68477 2895.430237 3233.020251 3112.773774 2983.249324 1.021283679 0.90505259 0.938860942 0.83053439 1.156932559 1.181156648 0.970562606 1.083724456 1.043417239 1 11.54266884 -5.720088249 24.99997416 0.984382253 1.094917686 0.404125114 0.079998719 147.0748978 88917.46843 0.011972898 0.023945611 1.91E-06 5.720088249 0.110535433 NS(ph)PQPLRR ddPTM_HeLa_CUDC101_4h_R1 1 NSPQPLRR 8 1 Q9UL54-2 Q9UL54-2 1 0 NS(1)PQPLRR 75.416 0.028401 9813800 1788.3 855.2 1304.9 2075.8 814.81 718.5 977.47 844.16 1268.9 1518.6 TRUE FALSE FALSE 1578.678185 881.5476983 1375.446841 2160.460096 754.7030896 704.7958096 1015.171345 940.2557622 1216.595405 1509.5673 1.045781917 0.583973764 0.911153045 1.431178389 0.499946634 0.466885981 0.672491611 0.622864421 0.805923264 1 10.55991936 -5.71987015 24.99999558 1.002044441 0.566138318 0.458848564 0.208888225 88.3002131 53103.85681 0.028572037 0.057143671 1.91E-06 5.71987015 -0.435906122 VGGS(ph)SVDLHR ddPTM_HeLa_CUDC101_4h_R1 4 VGGSSVDLHR 10 0 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-19;O60716-4;O60716-6;O60716-11;O60716-13;O60716-21;O60716-24;O60716-9;O60716-17;O60716-16;O60716-10;O60716-23;O60716-15;O60716-18;O60716-12;O60716-22;O60716-20;O60716-14 O60716-5 CTNND1 Catenin delta-1 1 0 VGGS(0.944)S(0.056)VDLHR;VGGS(0.955)S(0.045)VDLHR;VGGS(0.715)S(0.285)VDLHR;VGGS(0.833)S(0.167)VDLHR ;;; 122.46 0.0027186 286492000 32261.2 20328.2 24854.6 23580 35351.9 34030.7 31789.1 32951.8 21972.1 21606.4 TRUE FALSE FALSE 28479.59104 20954.48775 26198.31486 24541.69432 32744.06077 33381.6211 33015.21624 36702.89972 21066.40074 21477.88417 1.325996118 0.975630913 1.219780992 1.142649533 1.524547786 1.55423229 1.537172655 1.708869432 0.980841528 1 14.39056426 -5.719280483 4.119969496 1.146449784 1.585921123 0.797461847 0.116258821 0.090302528 3.252001461 0.019947832 0.040201864 1.91E-06 5.719280483 0.43947134 TKPTQAAGPSS(ph)PQKPPTPEETK ddPTM_HeLa_CUDC101_4h_R1 1 TKPTQAAGPSSPQKPPTPEETK 22 2 F5H8D7;P18887 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 T(0.008)KPT(0.001)QAAGPS(0.286)S(0.684)PQKPPT(0.021)PEETK 74.703 0.00096185 301150000 7219.7 6670 6697.9 6409.1 6306.8 5362.6 5737.6 5261.4 6294.6 6787.4 TRUE FALSE FALSE 6373.41771 6875.494794 7060.008734 6670.4908 5841.559929 5260.31734 5958.901154 5860.336509 6035.133924 6747.028243 0.944625912 1.019040464 1.046387903 0.988656125 0.865797462 0.779649521 0.883189004 0.868580403 0.894487722 1 12.72003649 -5.719199913 5.123067583 0.984096256 0.844602737 0.665565231 0.046254005 0.078331312 4.710449854 0.006072461 0.01213267 1.91E-06 5.719199913 -0.139493519 TRPASQPT(ph)PFALHHAASCEVDPSSGDSISLAR ddPTM_HeLa_CUDC101_4h_R1 1 TRPASQPTPFALHHAASCEVDPSSGDSISLAR 32 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 T(0.099)RPAS(0.249)QPT(0.642)PFALHHAAS(0.009)CEVDPSSGDSISLAR 44.452 0.020035 12992000 594.21 421.13 443.47 432.72 583.76 770.99 404.01 435.11 459.61 402.76 TRUE FALSE FALSE 524.5576046 434.1045161 467.4453296 450.368192 540.6971878 756.2846503 419.592801 484.6411636 440.6646813 400.3643656 1.310200531 1.08427361 1.167549787 1.124895797 1.350512769 1.888990917 1.04802734 1.210500247 1.100659097 1 8.645169763 -5.716599857 5.980812292 1.145060581 1.390700263 0.236509317 0.21305 0.236904348 20.11569361 0.03272888 0.06532062 1.92E-06 5.716599857 0.245639682 AQS(ph)PGAVEEILDR ddPTM_HeLa_CUDC101_4h_R1 2 AQSPGAVEEILDR 13 0 E9PHY4;H7BXT7;A0A0C4DH16;B8ZZS0;Q9NYM9 E9PHY4 BET1L BET1-like protein 1 0 AQS(1)PGAVEEILDR;AQS(1)PGAVEEILDR ; 160.03 6.12E-05 9029000 3697.4 2881.6 2105.7 2406.5 1789.68 2340.1 1504.28 1047.57 2118.66 2746.9 TRUE FALSE FALSE 3263.996377 2970.37868 2219.540511 2504.647472 1657.658872 2295.466491 1562.300583 1166.821134 2031.327938 2730.561317 1.19535729 1.08782713 0.812851372 0.917264687 0.607076231 0.840657369 0.572153635 0.427319148 0.743923209 1 11.41498184 -5.716530796 0.695394977 1.095491485 0.497340285 0.518244123 0.158536229 0.325214917 0.269041705 0.024561454 0.105810378 1.92E-06 5.716530796 -0.598151199 LLFACS(ph)PPPASQPVVK ddPTM_HeLa_CUDC101_4h_R1 1 LLFACSPPPASQPVVK 16 0 C9JH94;C9JFR5;P30304-2;P30304 C9JH94 CDC25A M-phase inducer phosphatase 1 1 0 LLFACS(0.693)PPPAS(0.307)QPVVK 90.685 0.0022687 0 1005.5 565.52 587.79 576.7 513.4 562.98 344.62 293.54 792.25 665.02 TRUE FALSE FALSE 887.6368142 582.9430009 619.5677054 600.2203187 475.5275048 552.2420945 357.9121088 326.9554071 759.5931197 661.0644315 1.342738729 0.881824786 0.937227411 0.90796039 0.719336092 0.835383161 0.541417889 0.494589319 1.149045514 1 9.368647082 -5.71576368 0.662737672 1.151337648 0.503920215 0.741239913 0.124180172 0.422718025 0.31215681 0.032732544 0.145903339 1.92E-06 5.71576368 -0.647417433 QVHPDTGISSK ddPTM_HeLa_CUDC101_4h_R1 4 QVHPDTGISSK 11 0 O60814;P57053;P58876;P62807;Q16778;Q5QNW6;Q5QNW6-2;Q8N257;Q93079;U3KQK0;Q99877;Q99879;Q99880 O60814;P58876;P62807;Q16778;Q5QNW6;Q8N257;Q93079;U3KQK0;Q99879;Q99880 HIST1H2BK;H2BFS;HIST1H2BD;HIST1H2BC;HIST2H2BE;HIST2H2BF;HIST3H2BB;HIST1H2BH;HIST1H2BN;HIST1H2BM;HIST1H2BL Histone H2B type 1-K;Histone H2B type F-S;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 2-E;Histone H2B type 2-F;Histone H2B type 3-B;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-N;Histone H2B type 1-M;Histone H2B type 1-L 0 0 ;;; ;;; 109.16 0.0066895 176632000 42703.3 27728.3 30031.4 29278 41556.4 38043.6 36064 35723.2 39412.4 36641.7 FALSE FALSE TRUE 37697.68391 28582.57606 31654.98832 30472.08339 38490.86716 37317.98171 37455.00056 39789.78469 37787.80419 36423.75354 1.034975263 0.784723519 0.869075404 0.836599209 1.056751801 1.024550687 1.028312486 1.092413077 1.037449481 1 15.15259198 SVSSNVAS(ph)VSPIPAGSK ddPTM_HeLa_CUDC101_4h_R1 1 SVSSNVASVSPIPAGSK 17 0 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 SVS(0.202)S(0.202)NVAS(0.298)VS(0.298)PIPAGSK 156 6.65E-05 13365000 2148 1589.4 1805.6 1981.7 1775.7 1382.6 1394.6 661.63 1877.1 2012 TRUE FALSE FALSE 1896.214696 1638.36753 1903.216198 2062.522292 1644.710149 1356.229209 1448.390189 736.9472848 1799.725143 2000.032535 0.948091925 0.819170439 0.951592619 1.03124437 0.822341697 0.678103573 0.724183314 0.368467648 0.899847934 1 10.96580775 -4.146567277 0.639797924 0.969529614 2.51E-16 0.822320662 0.078875198 0.971760892 0.246623705 0.013342453 0.710595696 7.14E-05 4.146567277 -0.969529614 down EQTLS(ph)PTITSGLHNIAR ddPTM_HeLa_CUDC101_4h_R1 2 EQTLSPTITSGLHNIAR 17 0 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;H7BXG7;O94979-7;O94979-6;O94979-10;O94979-4;H0Y8W8 D6REX3 SEC31A Protein transport protein Sec31A 1 0 EQT(0.043)LS(0.794)PT(0.15)IT(0.013)SGLHNIAR;EQT(0.013)LS(0.787)PT(0.164)IT(0.035)SGLHNIAR ; 157.07 3.90E-05 84558000 8355.8 4894.2 4139 4392.8 9104.3 6992.2 6799.1 6889.2 7258.6 6612 TRUE FALSE FALSE 7376.345791 5044.984501 4362.76686 4571.957371 8432.693927 6858.835435 7061.343565 7673.438681 6959.397436 6572.67153 1.122275129 0.76756985 0.663773755 0.695601073 1.28299336 1.043538446 1.074349073 1.167476367 1.058838465 1 12.68226417 -5.715305478 24.99996487 0.979438816 1.130211008 0.266674879 0.169584962 221.0003528 119758.8675 0.028997549 0.057994935 1.93E-06 5.715305478 0.150772192 EDMAALEKDYEEVGADS(ph)ADGEDEGEEY ddPTM_HeLa_CUDC101_4h_R1 3 EDMAALEKDYEEVGADSADGEDEGEEY 27 1 Q9BQE3;F5H5D3 Q9BQE3 TUBA1C Tubulin alpha-1C chain 1 0 EDMAALEKDYEEVGADS(0.963)ADGEDEGEEY(0.037);EDMAALEKDYEEVGADS(0.717)ADGEDEGEEY(0.282);EDMAALEKDYEEVGADS(0.997)ADGEDEGEEY(0.002) ;; 78.272 3.72E-05 18392200 4637.1 4439.05 4910.92 4498.79 5832.87 5415.14 4767.74 5461.87 5645.65 5085.59 TRUE FALSE FALSE 4093.546167 4575.811869 5176.41919 4682.270102 5402.590801 5311.855227 4951.633329 6083.627203 5412.933917 5055.340685 0.809746845 0.905144115 1.023950612 0.926202682 1.068689756 1.050741297 0.979485585 1.203405979 1.070735734 1 12.3035926 -5.714127896 0.883697736 0.910664853 1.095131326 0.238902755 0.08946328 0.517850738 0.746154921 0.01574254 0.05666664 1.93E-06 5.714127896 0.184466472 RRPESAPAES(ph)SPSK ddPTM_HeLa_CUDC101_4h_R1 3 RRPESAPAESSPSK 14 2 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 0 RRPES(0.003)APAES(0.737)S(0.242)PS(0.018)K;RRPES(0.001)APAES(0.756)S(0.242)PSK;RRPES(0.002)APAES(0.976)S(0.021)PS(0.001)K ;; 120.99 0.00117 19362600 3892.3 4468.1 5477.9 4821.4 3706.1 4183 3105.53 3146.66 4015.3 4571 TRUE FALSE FALSE 3436.050494 4605.756865 5774.051844 5018.037532 3432.708387 4103.216244 3225.311332 3504.863055 3849.787634 4543.811489 0.756204456 1.013632911 1.270750747 1.104367455 0.755468926 0.903033996 0.709825075 0.771348693 0.847259541 1 12.14968727 -5.713314943 24.99998069 0.938798643 0.787991874 0.296228916 0.144689564 180.4874472 93759.67009 0.025455075 0.050910062 1.94E-06 5.713314943 -0.150806768 ELKAEDEDIVLT(ph)PDGTR ddPTM_HeLa_CUDC101_4h_R1 1 ELKAEDEDIVLTPDGTR 17 1 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-5;Q8TEW0-9;F5GZI3 Q5VWV2;F5GZI3 PARD3 Partitioning defective 3 homolog 1 0 ELKAEDEDIVLT(0.982)PDGT(0.018)R 68.189 0.032741 2870200 1175.8 1037.9 953.86 951.27 1397.6 1275.7 1198.5 1155.3 1248.5 1297.4 TRUE FALSE FALSE 1037.974506 1069.876469 1005.428557 990.0669023 1294.501832 1251.368148 1244.726546 1286.814682 1197.036302 1289.683007 0.804829172 0.829565454 0.779593552 0.767682366 1.003736442 0.970291258 0.965141465 0.997775946 0.928163196 1 10.33280079 -5.713232291 24.99999762 0.879720755 0.981876432 0.434857413 0.069757535 145.8108447 75616.07918 0.013973061 0.027946077 1.94E-06 5.713232291 0.102155676 TNATSPGVNSSTS(ph)PQSTDK ddPTM_HeLa_CUDC101_4h_R1 1 TNATSPGVNSSTSPQSTDK 19 0 B7ZM87;O75044 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 1 0 TNATSPGVNS(0.002)S(0.002)T(0.422)S(0.573)PQSTDK 218.22 3.07E-26 18878000 2967.4 2562 2699.1 2384.2 2384.3 2332.6 1953 1825.2 2672.1 2524.1 TRUE FALSE FALSE 2619.56587 2640.932183 2845.02151 2481.437981 2208.414939 2288.109541 2028.327864 2032.97339 2561.954907 2509.086541 1.044031693 1.052547268 1.133887359 0.988980627 0.880166907 0.911929303 0.808392947 0.810244428 1.021070762 1 11.29294652 -5.713121021 2.307173001 1.032943018 0.842546185 0.818586416 0.043824017 0.106400691 1.15301907 0.007283111 0.015962561 1.94E-06 5.713121021 -0.190396833 KHS(ph)PS(ph)PPPPTPTESR ddPTM_HeLa_CUDC101_4h_R1 4 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 2 0 KHS(1)PS(0.999)PPPPT(0.001)PTESR;KHS(1)PS(0.991)PPPPT(0.004)PT(0.004)ES(0.001)R;KHS(1)PS(1)PPPPTPTESR;KHS(1)PS(1)PPPPTPTESR ;;; 84.436 0.0084479 1320486000 12034.3 11145.8 12305.8 11981.2 11992.7 10599.6 10369.2 11437.7 12483 12772.8 TRUE FALSE FALSE 10623.6576 11489.18889 12971.08877 12469.84512 11108.02241 10397.43029 10769.14352 12739.72154 11968.44546 12696.82682 0.836717532 0.904886634 1.021600827 0.982122959 0.874866025 0.818899906 0.848175979 1.003378381 0.942632803 1 13.63218036 -5.712765203 24.95209078 0.931525765 0.878788226 0.138452073 0.067264956 233.6560503 119778.8121 0.011982529 0.023965021 1.94E-06 5.712765203 -0.052737539 TVSSPPT(ph)S(ph)PRPGSAATVSASTSNIIPPR ddPTM_HeLa_CUDC101_4h_R1 1 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 2 0 T(0.011)VS(0.05)S(0.359)PPT(0.787)S(0.786)PRPGS(0.002)AATVS(0.001)AS(0.001)T(0.001)S(0.001)NIIPPR 61.141 0.0032861 192830000 2480.9 2417.2 2235.8 2167.4 2595.8 2462.5 2284.5 2178.9 2432.1 2437.5 TRUE FALSE FALSE 2190.092663 2491.671067 2356.674111 2255.79594 2404.313006 2415.531915 2372.61393 2426.937169 2331.847809 2423.001642 0.903875848 1.028340643 0.972625883 0.930992329 0.99228699 0.99691716 0.979204425 1.001624236 0.962379789 1 11.24257967 -5.71248257 24.4579213 0.959721002 0.991872961 0.113445039 0.032756482 159.0619121 79463.16592 0.006117528 0.01223503 1.94E-06 5.71248257 0.032151958 S(ph)HSLSQHTATSSK ddPTM_HeLa_CUDC101_4h_R1 1 SHSLSQHTATSSK 13 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 S(0.961)HS(0.039)LSQHTATSSK 107.63 0.0033894 1365600 2221.1 646.41 1083.8 831.93 2976.8 2329.6 2602.6 1582.5 1779.1 2132.1 TRUE FALSE FALSE 1960.746025 666.3251259 1142.393506 865.8597013 2757.207395 2285.166761 2702.983154 1762.645403 1705.764745 2119.418174 0.9251341 0.314390588 0.539012791 0.408536509 1.30092656 1.078204759 1.275342066 0.831664758 0.804826893 1 11.04945255 -5.7113798 24.9998963 0.83940664 1.129425626 0.303677249 0.269787659 153.7777535 76796.10411 0.044820831 0.089641558 1.94E-06 5.7113798 0.290018986 AAGMSS(ph)PGAQSHPEELPR ddPTM_HeLa_CUDC101_4h_R1 2 AAGMSSPGAQSHPEELPR 18 0 M0R0P8;Q13459-2;Q13459;M0R300;M0QZY4;M0R2J3 M0R0P8 MYO9B Unconventional myosin-IXb 1 0 AAGMS(0.081)S(0.919)PGAQSHPEELPR;AAGMS(0.206)S(0.794)PGAQSHPEELPR ; 147.49 4.78E-05 34808000 4729.8 4358.7 4578.1 4273.3 4227.2 3758 3982.1 3175.3 4209.7 4564.7 TRUE FALSE FALSE 4175.380014 4492.986381 4825.605934 4447.583645 3915.367878 3686.322411 4135.690931 3536.763317 4036.174384 4537.548961 0.920184013 0.990179152 1.063482945 0.980173147 0.862881682 0.812403886 0.911437202 0.77944356 0.889505418 1 12.14769749 -5.71095151 5.002729667 0.973381997 0.842137228 0.595398918 0.053643565 0.107200573 5.737639283 0.007610112 0.015265615 1.95E-06 5.71095151 -0.131244769 LSGEHS(ph)ESSTPRPR ddPTM_HeLa_CUDC101_4h_R1 1 LSGEHSESSTPRPR 14 1 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 LSGEHS(1)ESSTPRPR 82.837 0.012511 21076000 1224.9 443.42 618.52 532.87 1238 1023.8 976.12 974.78 1016.9 780.2 TRUE FALSE FALSE 1081.319079 457.0812446 651.9590621 554.6027419 1146.675206 1004.272721 1013.769275 1085.745015 974.9829516 775.5593357 1.394244166 0.589356898 0.840630797 0.715100336 1.478513833 1.294901208 1.30714599 1.399950932 1.257135214 1 9.599093351 -5.710855144 24.99965441 1.082532501 1.360256029 0.343012695 0.24369258 147.0220908 72660.09003 0.041860391 0.083720701 1.95E-06 5.710855144 0.277723528 (ac)AMS(ph)SGGSGGGVPEQEDSVLFR ddPTM_HeLa_CUDC101_4h_R1 1 AMSSGGSGGGVPEQEDSVLFR 21 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 0 AMS(0.433)S(0.143)GGS(0.425)GGGVPEQEDSVLFR 60.631 0.00012653 0 262.83 222.65 210.45 221.22 290.33 332 112.36 364.84 348.09 260.89 TRUE FALSE FALSE 232.0214658 229.5095826 221.8275636 230.2423078 268.9129343 325.6676531 116.6937628 406.3719109 333.7415829 259.3382147 0.894667475 0.884981733 0.855360109 0.887807098 1.036919818 1.255764229 0.44996748 1.566957309 1.286897048 1 8.018690999 -5.710707813 9.046811541 0.931873214 1.045689007 0.020021472 0.285108002 0.885867019 147.3181419 0.033780978 0.067512221 1.95E-06 5.710707813 0.113815792 QVVESAYEVIK ddPTM_HeLa_CUDC101_4h_R1 2 QVVESAYEVIK 11 0 P00338-3;P00338;P00338-4 P00338-3 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 150.46 0.0003113 446680 240.23 185.19 240.56 212.1 409.12 216.07 191.57 147.24 168.87 207.81 FALSE FALSE TRUE 212.0706036 190.8954844 253.5654013 220.7503548 378.9400327 211.9488247 198.9589191 164.0012064 161.9091071 206.5739369 1.026608713 0.924102466 1.227480122 1.068626363 1.834403887 1.026019197 0.963136599 0.793910446 0.783782841 1 7.690514433 -6.75707842 24.99577167 1.006281605 1.165132543 0.114566111 0.267543891 232.765907 1334140.833 0.04110456 0.056983396 1.75E-07 6.75707842 0.158850938 SRSFTSS(ph)YAISAANHVK ddPTM_HeLa_CUDC101_4h_R1 1 SRSFTSSYAISAANHVK 17 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 S(0.031)RS(0.212)FT(0.212)S(0.212)S(0.324)Y(0.01)AISAANHVK 113.51 0.00042581 26598000 1966.3 1454.2 998.63 1056.5 2223.8 1861.4 1938.5 1474.9 1789.7 1604.4 TRUE FALSE FALSE 1735.813295 1499.002178 1052.618958 1099.588637 2059.754704 1825.896896 2013.268594 1642.796654 1715.927808 1594.856957 1.088381805 0.93989757 0.660008381 0.689459096 1.291498084 1.144865618 1.262350573 1.030058932 1.075913298 1 10.63921132 -5.710093581 24.99998377 0.980391436 1.185252518 0.369866901 0.159074454 118.9129079 57897.27302 0.025703668 0.051407291 1.95E-06 5.710093581 0.204861082 HVTLPSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 HVTLPSSPR 9 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 HVTLPS(0.31)S(0.69)PR;HVTLPS(0.208)S(0.792)PR;HVTLPS(0.214)S(0.786)PR;HVT(0.005)LPS(0.285)S(0.71)PR ;;; 122.55 0.0032611 216024000 18802 8352.9 7921.8 7856 17617.8 14746.7 13474.3 10391.4 12652.4 10180 TRUE FALSE FALSE 16598.05806 8610.242948 8350.07647 8176.401637 16318.16999 14465.43127 13994.00826 11574.31497 12130.86272 10119.44891 1.640213634 0.850860855 0.825151305 0.807988825 1.612555204 1.429468284 1.382882447 1.143769298 1.198767129 1 13.3048431 -5.709600215 24.99975592 1.201076576 1.394168959 0.15925375 0.27632139 247.9030754 119551.2034 0.051463405 0.102926729 1.95E-06 5.709600215 0.193092383 AVPMAPAPAS(ph)PGSSNDSSAR ddPTM_HeLa_CUDC101_4h_R1 10 AVPMAPAPASPGSSNDSSAR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 AVPMAPAPAS(0.89)PGS(0.033)S(0.056)NDS(0.011)S(0.011)AR;AVPMAPAPAS(0.995)PGS(0.004)S(0.001)NDSSAR;AVPMAPAPAS(0.978)PGS(0.011)S(0.011)NDSS(0.001)AR;AVPMAPAPAS(0.987)PGS(0.01)S(0.003)NDSSAR;AVPMAPAPAS(0.987)PGS(0.01)S(0.003)NDSSAR;AVPMAPAPAS(0.593)PGS(0.308)S(0.096)NDS(0.002)S(0.002)AR;AVPMAPAPAS(0.714)PGS(0.218)S(0.067)NDSSAR;AVPMAPAPAS(0.978)PGS(0.015)S(0.007)NDSSAR;AVPMAPAPAS(0.924)PGS(0.054)S(0.017)NDS(0.004)S(0.001)AR;AVPMAPAPAS(0.938)PGS(0.047)S(0.015)NDS(0.001)SAR ;;;;;;;;; 277.07 3.04E-87 532244500 21431.19 17783.65 19016.24 18379.69 19744.06 17833.38 17743.61 16645.04 17790.46 19213.84 TRUE FALSE FALSE 18919.0584 18331.54318 20044.31546 19129.2932 18287.58003 17493.23799 18427.98698 18539.84407 17057.12971 19099.55523 0.990549684 0.959789009 1.049465038 1.001556998 0.95748722 0.915897663 0.96483854 0.970695069 0.893064237 1 14.22125142 -5.709279434 5.559061284 0.997330556 0.949842644 0.048381288 0.041117279 0.134439722 8.923151297 0.00350678 0.007022996 1.95E-06 5.709279434 -0.047487912 QYMEGFNDELEAFKER ddPTM_HeLa_CUDC101_4h_R1 1 QYMEGFNDELEAFKER 16 1 K7EQA9;K7EKQ2;Q16543;K7EL68 K7EQA9 CDC37 "Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed" 0 0 77.24 0.025231 11115000 434.25 398.94 311.12 309.77 469.4 289.07 398.43 381.41 549.81 358.4 FALSE FALSE TRUE 383.3478733 411.2308685 327.9400883 322.4037595 434.7732972 283.5564714 413.7975786 424.8281727 527.1465991 356.2682209 1.076009172 1.154273226 0.920486502 0.904946725 1.220353856 0.795907282 1.161477657 1.192439145 1.479634074 1 8.476819991 -4.553504213 24.99910176 1.026095042 1.184699665 0.012679441 0.184908773 176.134456 143775.5871 0.014734879 0.055134009 2.80E-05 4.553504213 0.158604623 MPIEDS(ph)SPEK ddPTM_HeLa_CUDC101_4h_R1 1 MPIEDSSPEK 10 0 A0A088AWL3;O75376;O75376-2 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 MPIEDS(0.886)S(0.114)PEK 137.01 0.0015677 14438000 3109.8 2872.8 2464.3 2496.1 2264.5 1981.1 2020.1 1514.1 2220.7 2584.5 TRUE FALSE FALSE 2745.273958 2961.307563 2597.527512 2597.901747 2097.452347 1943.313818 2098.015934 1686.459024 2129.161806 2569.127279 1.068562846 1.15265117 1.011054428 1.011200094 0.816406553 0.756410099 0.816625922 0.656432648 0.828749056 1 11.32706265 -5.708671945 2.350866543 1.042688334 0.749581555 0.666814031 0.086488855 0.080484432 0.905289502 0.008571703 0.018747382 1.96E-06 5.708671945 -0.293106779 QYMKYYNDYGDIIK ddPTM_HeLa_CUDC101_4h_R1 1 QYMKYYNDYGDIIK 14 1 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 0 0 58.781 0.033663 3485900 475.82 848.71 1010.4 1074.8 427.18 586.19 495.18 535.86 350.59 545.08 FALSE FALSE TRUE 420.0451009 874.8577491 1065.02528 1118.63499 395.6677825 575.0094024 514.2792585 596.8601364 336.1385318 541.8378399 0.775222899 1.614611761 1.96557937 2.064519875 0.730232836 1.061220461 0.949138692 1.101547534 0.6203674 1 9.081717339 -7.272470154 24.85555804 0.893855252 1.355047804 0.26280647 0.418253722 840.4795382 1893842.479 0.076686279 0.088130635 5.34E-08 7.272470154 0.461192552 QYPK(ac)FNFVGK ddPTM_HeLa_CUDC101_4h_R1 2 QYPKFNFVGK 10 1 Q07666-2;Q07666;Q5VWX1 Q07666-2 KHDRBS1;KHDRBS2 "KH domain-containing, RNA-binding, signal transduction-associated protein 1;KH domain-containing, RNA-binding, signal transduction-associated protein 2" 0 1 ; QYPK(1)FNFVGK;QYPK(1)FNFVGK 141.48 0.00070086 687270 358.82 201.2 0 199.292 301.98 186.26 370.68 399.39 459.87 154.21 FALSE TRUE FALSE 316.7596635 207.3987335 0 207.4199892 279.703537 182.7074008 384.9772518 444.8549432 440.913964 153.2927521 2.066370779 1.352958511 0 1.353097171 1.824636411 1.19188545 2.511385872 2.901995934 2.876287091 1 7.260145675 -4.666857496 4.396884395 1.390894412 2.810192291 0.333182123 0.707888906 0.148053202 4.976573339 0.086072463 0.35234563 2.15E-05 4.666857496 1.419297879 QYQDFLEDLEEDEAIRK ddPTM_HeLa_CUDC101_4h_R1 1 QYQDFLEDLEEDEAIRK 17 1 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 0 0 184.22 7.06E-11 5154600 862.73 787.24 726.78 748.3 654.15 771.63 741.32 725.04 694.28 571.01 FALSE FALSE TRUE 761.6020972 811.4939313 766.0719252 778.8189084 605.8946578 756.9124434 769.9129607 807.5756229 665.6614845 567.6136071 1.341761522 1.429659052 1.349636294 1.372093443 1.067442095 1.333499468 1.356403284 1.422755925 1.17273701 1 9.148765365 -9.119299929 0.811899944 0.992627693 1.330886509 0.423687069 0.108294776 0.35278751 0.40851418 0.073774477 0.019959892 7.60E-10 9.119299929 0.338258816 S(ph)NGDLSPK ddPTM_HeLa_CUDC101_4h_R1 2 SNGDLSPK 8 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 S(1)NGDLSPK;S(1)NGDLSPK ; 105.2 0.014078 23106000 6994.2 2846.9 5873.2 6570.3 3726.1 3988.6 4055.5 1621.51 6424.1 7861.2 TRUE FALSE FALSE 6174.350479 2934.609615 6190.722957 6838.265233 3451.233026 3912.5241 4211.921993 1806.096144 6159.295879 7814.441233 0.790120534 0.375536718 0.792215691 0.875080512 0.441648088 0.500678677 0.538992088 0.231122878 0.788194024 1 12.931927 -5.708072467 0.165330748 1.148035519 6.30E-14 0.477359528 0.170798307 5.225039841 0.286006933 0.498669565 1.520034468 1.96E-06 5.708072467 -1.148035519 RAAASK(ac)LGEFAK ddPTM_HeLa_CUDC101_4h_R1 1 RAAASKLGEFAK 12 2 C9J9C1;P30153;B3KQV6;P30154-4;P30154;P30154-3;P30154-2 C9J9C1 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform 0 1 RAAASK(1)LGEFAK 98.942 0.019968 908830 689.35 902.49 639.88 561.99 1446.8 875.49 515.87 478.77 1040.3 802.32 FALSE TRUE FALSE 608.545438 930.2946472 674.4738483 584.9103813 1340.072446 858.7914869 535.7672787 533.2712415 997.4183937 797.547765 0.76302068 1.166443802 0.845684582 0.73338602 1.68024099 1.076790036 0.671768265 0.668638626 1.250606468 1 9.639427114 -10.01866396 2.524724488 1.001537287 0.917814062 0.007891582 0.30304482 1.911003435 22.1309747 0.250324554 0.044079328 9.58E-11 10.01866396 -0.083723225 RAAEDDEDDDVDTK ddPTM_HeLa_CUDC101_4h_R1 4 RAAEDDEDDDVDTK 14 1 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 0 ;;; ;;; 269.05 9.58E-86 203171000 20133 17719.1 18989.1 17725.9 18952.3 16913.8 16963.9 17525.3 19352.2 19074.3 FALSE FALSE TRUE 17773.04026 18265.00447 20015.70818 18448.83882 17554.22659 16591.19745 17618.20331 19520.30931 18554.49412 18960.84522 0.937354852 0.963301175 1.055633752 0.972996647 0.925814561 0.875024149 0.92918871 1.029506285 0.978568936 1 14.21073566 -5.790411917 9.318563464 0.976421531 0.934491598 0.168120191 0.046056693 0.4539978 137.5686666 0.007299305 0.013357814 1.62E-06 5.790411917 -0.041929933 RAAEDDEDDDVDTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 RAAEDDEDDDVDTKK 15 2 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 1 ; RAAEDDEDDDVDTK(1)K;RAAEDDEDDDVDTK(1)K 314.06 1.23E-121 15688200 7295.6 5443 5297.9 5195.8 7731.3 6710.5 6895 6654.3 6854.8 5737.5 FALSE TRUE FALSE 6440.420827 5610.692378 5584.320499 5407.707182 7160.977402 6582.508393 7160.94246 7411.798614 6572.242243 5703.373095 1.129230145 0.983749842 0.979125932 0.948159465 1.255568816 1.154143045 1.255562689 1.299546512 1.152343032 1 12.4775997 -5.74738542 24.99964637 1.042127585 1.23601212 0.679238516 0.070157038 121.1340913 215476.0183 0.010812087 0.021540234 1.79E-06 5.74738542 0.193884535 RAAEDDEDDDVDTKK ddPTM_HeLa_CUDC101_4h_R1 3 RAAEDDEDDDVDTKK 15 2 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 0 0 ;; ;; 162.31 2.29E-05 549410000 15767.6 13795.6 16222.2 15142.1 15528.9 14253.9 13527.6 14023.1 14606.8 13750.3 FALSE FALSE TRUE 13919.34583 14220.62608 17099.2212 15759.66029 14383.36398 13982.03061 14049.36406 15619.43302 14004.70152 13668.5126 1.018351172 1.040393091 1.250993557 1.152990142 1.052299135 1.022937244 1.027863416 1.142730996 1.024595867 1 13.73856864 -6.98729411 24.98858678 1.009755625 1.104038333 0.313570006 0.063980839 214.7404218 422326.8907 0.010956737 0.014394548 1.03E-07 6.98729411 0.094282709 RAAEEEDEADPKR ddPTM_HeLa_CUDC101_4h_R1 2 RAAEEEDEADPKR 13 2 P20962 P20962 PTMS Parathymosin 0 0 ; ; 128.28 0.00063727 9057400 2596.1 2009.28 2568.8 2732.4 2963.2 2154.97 2568.4 2395.2 2577.3 2321.9 FALSE FALSE TRUE 2291.789093 2071.183535 2707.677098 2843.839082 2744.61064 2113.867538 2667.464048 2667.859886 2471.062603 2308.089236 0.99293782 0.897358518 1.173124963 1.232118342 1.189126745 0.915851738 1.155702304 1.155873805 1.070609648 1 11.17248329 -6.74812963 24.99929295 0.989123904 1.134463322 0.398579689 0.088268642 175.7973029 330193.8366 0.013482391 0.019004275 1.79E-07 6.74812963 0.145339418 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(ph)PTMGR ddPTM_HeLa_CUDC101_4h_R1 1 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGR 38 2 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 MDRDPLGGLADMFGQMPGS(0.21)GIGT(0.208)GPGVIQDRFS(0.384)PT(0.198)MGR 41.936 0.024314 24588000 1167.1 836.83 767.01 934.32 1390.2 1465.8 1075.8 1459.8 1164.6 963.7 TRUE FALSE FALSE 1030.294307 862.6117404 808.4768807 972.4256081 1287.647716 1437.842307 1117.293966 1625.977731 1116.594695 957.9678695 1.075499858 0.900459992 0.843949893 1.015092091 1.344144993 1.500929575 1.166316744 1.697319694 1.165586791 1 9.903833458 -5.707996846 4.1253934 1.007192807 1.424509659 0.672778077 0.14681524 0.093362379 3.260939238 0.019395521 0.039269699 1.96E-06 5.707996846 0.417316852 S(ph)EAEDEDDEDYVPYVPLR ddPTM_HeLa_CUDC101_4h_R1 2 SEAEDEDDEDYVPYVPLR 18 0 D6RD33;D6RGI7;A0A499FJW5;Q9UJV9 D6RD33 DDX41 Probable ATP-dependent RNA helicase DDX41 1 0 S(1)EAEDEDDEDYVPYVPLR;S(1)EAEDEDDEDYVPYVPLR ; 259.29 1.99E-70 45382000 2237.5 1284.55 1335.82 1288.77 1091.23 982.37 1025.5 890.3 1365.31 349.93 TRUE FALSE FALSE 1975.223642 1324.125463 1408.03847 1341.331611 1010.732137 963.632929 1065.053879 991.6481533 1309.031344 347.8486008 5.678400423 3.806614314 4.047848594 3.856078788 2.905666818 2.770265359 3.061831717 2.850803916 3.763221531 1 8.442315707 -5.706753934 19.77379553 3.42077608 2.899825447 0.083158624 1.08863866 56.57016967 20451.21074 0.255669612 0.511335953 1.96E-06 5.706753934 -0.520950633 VRQS(ph)PLATR ddPTM_HeLa_CUDC101_4h_R1 1 VRQSPLATR 9 1 K7EK59;O75381-2;O75381 K7EK59 PEX14 Peroxisomal membrane protein PEX14 1 0 VRQS(0.998)PLAT(0.002)R 77.74 0.027358 28904000 1257.8 973.24 1234.7 903.15 1091 835.63 895.31 799.18 979.37 1026.5 TRUE FALSE FALSE 1110.362591 1003.224371 1301.451617 939.9843607 1010.519104 819.69175 929.8424066 890.1554208 938.9999541 1020.394332 1.088170088 0.98317321 1.275439872 0.92119716 0.990322145 0.803308803 0.91125791 0.872364137 0.920232428 1 9.994911075 -5.706399212 2.090375438 1.052565362 0.872483408 0.362694533 0.099050008 0.215381458 1.913109072 0.013083518 0.029532224 1.97E-06 5.706399212 -0.180081953 LLPDPGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 LLPDPGSPR 9 0 A6ND36 A6ND36 FAM83G Protein FAM83G 1 0 LLPDPGS(1)PR;LLPDPGS(1)PR;LLPDPGS(1)PR ;; 111.5 0.0094817 66403000 23084.9 18240 17488.1 16736.5 19428.5 16098.2 16652 13693.4 18494.8 17890.5 TRUE FALSE FALSE 20378.92302 18801.95278 18433.55958 17419.08681 17995.29826 15791.15366 17294.27322 15252.20131 17732.43652 17784.08651 1.145907776 1.057234667 1.036519901 0.97947605 1.011876446 0.887937294 0.972457776 0.857631979 0.997095718 1 14.11829925 -5.705649508 0.975296567 1.068887642 0.902964179 0.54879431 0.051928863 0.345900228 0.621103687 0.010450554 0.035157659 1.97E-06 5.705649508 -0.165923463 STDEYS(ph)EADEEEEEEEGKPSR ddPTM_HeLa_CUDC101_4h_R1 2 STDEYSEADEEEEEEEGKPSR 21 1 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 S(0.003)T(0.003)DEYS(0.994)EADEEEEEEEGKPSR;STDEYS(1)EADEEEEEEEGKPSR ; 181.88 2.42E-13 89742000 3101.8 2344.1 2223.23 2321.6 2320 1881.54 1477.34 2182.7 2658.17 2385.49 TRUE FALSE FALSE 2738.211706 2416.318943 2343.424539 2416.284883 2148.858222 1845.652759 1534.321499 2431.169745 2548.599108 2371.300999 1.154729706 1.018984491 0.988244234 1.018970128 0.906193783 0.778329179 0.647037849 1.025247215 1.074768285 1 11.21146309 -5.705235439 1.718295374 1.064765648 0.799950621 0.518486682 0.097773122 0.200012595 1.193400106 0.015659379 0.037793614 1.97E-06 5.705235439 -0.264815027 SETAPAETATPAPVEKS(ph)PAKK ddPTM_HeLa_CUDC101_4h_R1 2 SETAPAETATPAPVEKSPAKK 21 2 P16401 P16401 HIST1H1B Histone H1.5 1 0 SETAPAETAT(0.002)PAPVEKS(0.998)PAKK;SETAPAETATPAPVEKS(1)PAKK ; 83.404 0.00049247 28730000 12383.5 10338 15563.3 13812.5 10778.2 8212.4 8489.7 12824 9111 12689.1 TRUE FALSE FALSE 10931.9249 10656.50153 16404.69907 14375.83345 9983.113659 8055.762153 8817.150573 14283.83232 8735.440724 12613.62467 0.866675931 0.844840544 1.300553925 1.139706772 0.79145479 0.63865561 0.699017991 1.132412982 0.692540087 1 13.62269529 -5.700958861 24.9852507 0.970851497 0.794448976 0.130680786 0.197449057 99.05938429 40921.71237 0.026624339 0.053248667 1.99E-06 5.700958861 -0.176402522 DITQDNS(ph)ELK ddPTM_HeLa_CUDC101_4h_R1 2 DITQDNSELK 10 0 Q6NXT6-2;Q6NXT6 Q6NXT6-2 TAPT1 Transmembrane anterior posterior transformation protein 1 homolog 1 0 DITQDNS(1)ELK;DITQDNS(1)ELK ; 95.909 0.020692 31621000 2793 1711.29 1352.13 1567.72 1829 1821.36 1767.73 1300.51 1487.99 871.07 TRUE FALSE FALSE 2465.608774 1764.012817 1425.230238 1631.658398 1694.078314 1786.620593 1835.911938 1448.554802 1426.654422 865.8888369 2.84748881 2.037227807 1.645973683 1.884373985 1.956461663 2.063337136 2.120262856 1.672910817 1.647618449 1 9.758038013 -5.700160304 5.317754519 1.88835948 1.974628515 0.007673798 0.443646477 2.194830314 122.5363092 0.101400423 0.203779902 1.99E-06 5.700160304 0.086269035 TASRPDDIPDS(ph)PSSPK ddPTM_HeLa_CUDC101_4h_R1 1 TASRPDDIPDSPSSPK 16 1 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 TASRPDDIPDS(0.97)PS(0.027)S(0.003)PK 220.42 9.76E-32 10951000 2309.6 1933.3 1748.6 1964.6 1976.3 1739.7 1803.2 1920.1 1590.2 1848.5 TRUE FALSE FALSE 2038.872189 1992.862681 1843.134605 2044.72488 1830.512286 1706.518121 1872.750028 2138.676423 1524.651283 1837.50504 1.109587264 1.084548145 1.003063701 1.112772393 0.99619443 0.928714798 1.019180893 1.163902344 0.829739919 1 10.84353249 -5.699583972 24.99997992 1.055445792 1.019419568 0 0.096678851 178.0745055 71970.44811 0.010288183 0.020576364 2.00E-06 5.699583972 -0.036026224 AAEDSPYWVS(ph)PAYSK ddPTM_HeLa_CUDC101_4h_R1 3 AAEDSPYWVSPAYSK 15 0 Q9NW82 Q9NW82 WDR70 WD repeat-containing protein 70 1 0 AAEDSPYWVS(1)PAYSK;AAEDS(0.186)PYWVS(0.814)PAYSK;AAEDSPYWVS(0.997)PAYS(0.003)K ;; 206.06 2.35E-23 45247300 11304.6 10014.4 9235.4 9150.7 11318.1 9598.9 8200.1 3337.37 10112.2 9875.2 TRUE FALSE FALSE 9979.491925 10322.93179 9734.69366 9523.905099 10483.18631 9415.816975 8516.380604 3717.282711 9695.370836 9816.461871 1.016607822 1.051593938 0.991670297 0.97019733 1.067919017 0.959186426 0.867561115 0.378678465 0.987664493 1 13.26098742 -4.145883502 1.788573926 1.010333321 0.028924783 0.974292008 0.030575655 0.118814016 0.297198471 0.004024233 0.215388662 7.15E-05 4.145883502 -0.981408538 down EMLNSVMQELEDYS(ph)EGGPLY(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 EMLNSVMQELEDYSEGGPLYK 21 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 2 0 EMLNS(0.017)VMQELEDY(0.484)S(0.527)EGGPLY(0.971)K 43.12 0.0031082 0 1304.7 1099.1 1182.9 1243.4 1316.4 1397 1191.7 1184.2 1317.3 1339 TRUE FALSE FALSE 1151.765044 1132.961968 1246.851152 1294.111226 1219.291795 1370.354553 1237.664268 1319.004541 1263.000336 1331.035568 0.865315001 0.851188349 0.936752692 0.972258937 0.916047492 1.029540145 0.929850635 0.990961153 0.948885489 1 10.37833341 -5.699458047 1.565962591 0.928289275 0.975205459 0.179579292 0.049045828 0.761435921 3.752973164 0.009858129 0.024850432 2.00E-06 5.699458047 0.046916183 RAEDGSVIDYELIDQDAR ddPTM_HeLa_CUDC101_4h_R1 5 RAEDGSVIDYELIDQDAR 18 1 P07355;P07355-2;H0YN42;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5;H0YNA0 P07355 ANXA2 Annexin A2;Annexin 0 0 ;;;; ;;;; 211.26 4.46E-24 1393781000 12033.3 11293.6 10270 9908.4 12647.1 11698.9 10302 10865.4 10734.4 10744.5 FALSE FALSE TRUE 10622.77482 11641.54243 10825.22727 10312.50738 11714.14863 11475.76297 10699.35159 12102.27322 10291.92349 10680.59124 0.994586777 1.089971723 1.01354195 0.965537127 1.09676968 1.074450161 1.00175649 1.133108921 0.963609903 1 13.38270389 -1 0.22598505 0.992187118 1.557069973 0.345603417 0.046001132 42.84715632 0.517860819 0.030327712 8.992328114 0.1 1 0.564882855 RAEFTVETR ddPTM_HeLa_CUDC101_4h_R1 1 RAEFTVETR 9 1 P21333-2;P21333;Q60FE5;A0A087WWY3;F8WE98 P21333-2 FLNA Filamin-A 0 0 88.134 0.032733 8430500 3098.5 1724.9 1978.9 2212.5 1873 2025.9 1902.1 1957.4 2239.2 2373.2 FALSE FALSE TRUE 2735.298527 1778.042124 2085.88532 2302.735313 1734.832522 1987.259333 1975.464634 2180.222504 2146.899228 2359.084101 1.159474783 0.753700186 0.884192861 0.976114125 0.735383923 0.842385963 0.837386269 0.924181763 0.910056249 1 11.20401114 -7.263536113 24.99912222 1.075307537 0.851365323 0.389808777 0.092342685 93.43360357 1113996.187 0.01462095 0.017159412 5.45E-08 7.263536113 -0.223942214 RFS(ph)EGVLQSPSQDQEK ddPTM_HeLa_CUDC101_4h_R1 3 RFSEGVLQSPSQDQEK 16 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RFS(0.999)EGVLQS(0.001)PSQDQEK;RFS(1)EGVLQSPSQDQEK;RFS(1)EGVLQSPSQDQEK ;; 157.42 7.43E-08 58538000 4559.6 3886.5 3925.8 4079.4 5223.4 5753.3 5153.1 4876.9 3179.72 3751.6 TRUE FALSE FALSE 4025.1306 4006.238458 4138.040623 4245.775565 4838.080188 5643.565388 5351.856793 5432.066583 3048.650596 3729.285316 1.079330289 1.074264401 1.109606874 1.138495772 1.297321009 1.513310168 1.435089123 1.456597209 0.817489234 1 11.86468346 -5.698560781 1.440969309 1.043981513 1.475281487 0.858233282 0.080470031 0.061661352 0.25578096 0.006883976 0.018084349 2.00E-06 5.698560781 0.431299975 GLDIESYDS(ph)LERPLR ddPTM_HeLa_CUDC101_4h_R1 1 GLDIESYDSLERPLR 15 1 Q9H792 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 GLDIES(0.003)YDS(0.997)LERPLR 84.94 0.0087482 5847900 2820.2 1926.7 2260.4 1945.3 2385.3 1959.2 1905.6 1523.7 2249.8 2756.4 TRUE FALSE FALSE 2489.620431 1986.059343 2382.604061 2024.637742 2209.341171 1921.831524 1979.09963 1697.151849 2157.062292 2740.00481 0.908619 0.724837904 0.869561999 0.738917587 0.806327479 0.701397135 0.722297867 0.619397398 0.78724763 1 11.41996271 -5.697103401 0.178157485 1.080761624 0.445221246 0.353747414 0.085502355 2.393186847 0.143641863 0.121870443 0.398959002 2.01E-06 5.697103401 -0.635540377 VGSPQPS(ph)SSGGEK ddPTM_HeLa_CUDC101_4h_R1 1 VGSPQPSSSGGEK 13 0 V9GYB6;O94761 V9GYB6 RECQL4 ATP-dependent DNA helicase Q4 1 0 VGS(0.032)PQPS(0.724)S(0.223)S(0.021)GGEK 108.23 0.0051232 65772000 4233.3 3257.7 3474.6 3524.6 3160.7 2843.6 3178.2 1965.3 2993.6 3380.4 TRUE FALSE FALSE 3737.078991 3358.065876 3662.447386 3668.348423 2927.541458 2789.363068 3300.784239 2189.021808 2870.202541 3360.29323 1.112128834 0.999337155 1.089918985 1.091675092 0.871216069 0.830095136 0.982290536 0.651437734 0.854152404 1 11.71437142 -5.69651155 5.499342681 1.055176302 0.840549191 0.429981335 0.104285261 0.102786684 5.923338165 0.011756498 0.023628444 2.01E-06 5.69651155 -0.214627111 TDALTS(ph)SPGR ddPTM_HeLa_CUDC101_4h_R1 1 TDALTSSPGR 10 0 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 TDALT(0.117)S(0.859)S(0.024)PGR 84.821 0.036301 20701000 5715.3 4265.6 4418.8 4483.7 4024.8 4404.8 3775.7 3176.5 4953.4 4894.7 TRUE FALSE FALSE 5045.361198 4397.01808 4657.693694 4666.564666 3727.898523 4320.785779 3921.330014 3538.09992 4749.218755 4865.586107 1.036948291 0.903697516 0.957272894 0.959096101 0.766176662 0.888029866 0.805931686 0.727168288 0.97608359 1 12.24839789 -5.696042047 0.564027087 1.019032913 0.73940171 0.71543165 0.052824896 0.412400776 0.206694087 0.011424914 0.057253092 2.01E-06 5.696042047 -0.279631202 NVPESSPHS(ph)PCEGLPSEAALTPRPEGK ddPTM_HeLa_CUDC101_4h_R1 1 NVPESSPHSPCEGLPSEAALTPRPEGK 27 1 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H0YCW2;S4R3B3;H7C453;S4R3U7 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 0 NVPES(0.143)S(0.113)PHS(0.745)PCEGLPSEAALTPRPEGK 70.295 0.00010427 14427000 3211.3 2118.8 2235.4 2156.7 3500.2 3313.5 3228.3 2950.8 2443 2569.9 TRUE FALSE FALSE 2834.876282 2184.077717 2356.252486 2244.659548 3241.997219 3250.300508 3352.816612 3286.707144 2342.298506 2554.614121 1.109708217 0.854954061 0.922351625 0.878668731 1.269075119 1.27232543 1.31245521 1.286576755 0.91688936 1 11.31888967 -5.691804735 8.585493307 1.015101414 1.287601195 0.772036326 0.085318431 0.134641788 15.03037938 0.013971518 0.027962657 2.03E-06 5.691804735 0.272499781 SHILEDDENS(ph)VDISMLK ddPTM_HeLa_CUDC101_4h_R1 5 SHILEDDENSVDISMLK 17 0 O75717;O75717-2 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 0 SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(1)VDISMLK;SHILEDDENS(0.998)VDIS(0.002)MLK;SHILEDDENS(1)VDISMLK ;;;; 191.66 7.84E-12 212884000 25858.38 19449.46 25283.29 22639.96 33508.09 33956.53 34509.35 30154 19742.26 21501.9 TRUE FALSE FALSE 22827.2999 20048.67481 26650.18114 23563.31543 31036.26496 33308.86577 35840.38719 33586.60947 18928.47569 21374.00574 1.067993532 0.937993329 1.246850097 1.102428609 1.452056546 1.558381998 1.676821258 1.57137646 0.885583915 1 14.38356969 -5.691620448 1.186677447 1.030784164 1.643597748 0.892302278 0.09100207 0.087166855 0.239780761 0.011696316 0.034647125 2.03E-06 5.691620448 0.612813584 SDGS(ph)LEDGDDVHR ddPTM_HeLa_CUDC101_4h_R1 2 SDGSLEDGDDVHR 13 0 Q9NRX5 Q9NRX5 SERINC1 Serine incorporator 1 1 0 S(0.053)DGS(0.947)LEDGDDVHR;SDGS(1)LEDGDDVHR ; 189.99 2.29E-11 30815000 5594.2 3868.9 3554.9 4010.1 3559.1 3477.7 3429.5 2419 3496.3 3700.9 TRUE FALSE FALSE 4938.456356 3988.096223 3747.088647 4173.649211 3296.552284 3411.368667 3561.776964 2694.369182 3352.181034 3678.886882 1.342377875 1.084049701 1.018538696 1.134486964 0.896073293 0.927282837 0.968167024 0.732387069 0.911194375 1 11.8450536 -5.69155644 0.920055937 1.156535869 0.844139784 0.284910542 0.130813518 0.465289549 0.73073401 0.024664355 0.088003957 2.03E-06 5.69155644 -0.312396085 ADSGPTQPPLSLS(ph)PAPETK ddPTM_HeLa_CUDC101_4h_R1 4 ADSGPTQPPLSLSPAPETK 19 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 1 0 ADSGPTQPPLS(0.004)LS(0.995)PAPETK;ADSGPTQPPLS(0.188)LS(0.812)PAPETK;ADSGPTQPPLS(0.006)LS(0.994)PAPETK;ADSGPTQPPLS(0.085)LS(0.915)PAPETK ;;; 212.55 2.18E-24 1204569000 23095.9 20083.6 19207.5 18874.7 19470.4 17352.7 15224.23 17339.26 20107.6 19525.7 TRUE FALSE FALSE 20388.63361 20702.35191 20245.91555 19644.49185 18034.10738 17021.72616 15811.43365 19313.09127 19278.75622 19409.56027 1.05044284 1.066605921 1.043089862 1.012103911 0.929135289 0.876976393 0.81462091 0.995029821 0.993260844 1 14.24447981 -5.690576597 2.778205539 1.029652127 0.888579126 0.639167903 0.046058603 0.117173314 1.833341912 0.006612401 0.014104669 2.04E-06 5.690576597 -0.141073001 RAGELTEDEVER ddPTM_HeLa_CUDC101_4h_R1 2 RAGELTEDEVER 12 1 P62269 P62269 RPS18 40S ribosomal protein S18 0 0 ; ; 166.6 2.80E-05 47865000 4526.9 3966.8 4679.8 4300.4 4315.3 4350.6 4338.1 4033.2 4240.3 3760.8 FALSE FALSE TRUE 3996.263644 4089.012406 4932.804144 4475.7889 3996.968916 4267.619554 4505.42197 4492.323185 4065.513039 3738.430594 1.068968259 1.093777804 1.319485281 1.197237393 1.069156914 1.141553774 1.205164 1.201660181 1.087491913 1 11.86821703 -7.091311403 3.266590229 1.032299458 1.183578817 0.468955313 0.064390719 0.148679968 3.034824085 0.011278731 0.01414026 8.10E-08 7.091311403 0.15127936 DLAVPAALT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 DLAVPAALTPR 11 0 Q8TEM1 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 1 0 DLAVPAALT(1)PR;DLAVPAALT(1)PR ; 118.76 0.021763 28909000 11915.5 9232 8561.6 9578.4 7744.5 7479.2 7160.6 4918 9251.9 7985.8 TRUE FALSE FALSE 10518.78315 9516.426977 9024.465993 9969.048553 7173.203664 7336.546721 7436.786741 5477.845241 8870.532766 7938.300106 1.325067459 1.198799094 1.136826005 1.255816538 0.903619612 0.924196191 0.936823582 0.690052677 1.117434797 1 12.95461439 -5.689779851 6.396780624 1.165692324 0.869460346 0.684089927 0.102775612 0.131626251 9.177386627 0.019956388 0.040043331 2.04E-06 5.689779851 -0.296231978 RAS(ph)QEANLLTLAQK ddPTM_HeLa_CUDC101_4h_R1 2 RASQEANLLTLAQK 14 1 A0A1C7CYX1;Q6PJG2;A0A0A0MSU2;H7C1L3 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 0 RAS(1)QEANLLTLAQK;RAS(1)QEANLLTLAQK ; 209.23 2.25E-23 144134000 6824.1 5440 5007.5 5204.6 4771.1 4032.8 4451.5 2961 4498.5 5246.7 TRUE FALSE FALSE 6024.189343 5607.599952 5278.220597 5416.866084 4419.145458 3955.881059 4623.195846 3298.068271 4313.069926 5215.492395 1.155056682 1.075181311 1.012027283 1.038610676 0.847311265 0.758486593 0.886435162 0.632359904 0.826972719 1 12.34858775 -5.689474994 1.589142425 1.072937324 0.760467948 0.529780435 0.104458511 0.140480434 0.713047555 0.012207509 0.030781591 2.04E-06 5.689474994 -0.312469376 AVSLDSPVSVGS(ph)SPPVK ddPTM_HeLa_CUDC101_4h_R1 1 AVSLDSPVSVGSSPPVK 17 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 AVSLDS(0.021)PVS(0.065)VGS(0.548)S(0.365)PPVK 107.07 0.00038791 0 1838.8 1834.6 1754.2 1564.2 1794.6 1798.2 1264.3 660.63 1612.7 2031.9 TRUE FALSE FALSE 1623.258651 1891.121851 1849.037358 1627.994837 1662.215933 1763.902331 1313.064475 735.8334488 1546.223823 2019.814168 0.803667326 0.936285071 0.915449246 0.806012188 0.822954883 0.873299316 0.650091724 0.364307499 0.765527764 1 10.98000685 -4.144240101 1.123632437 0.899730508 7.01E-15 0.817785045 0.072811804 0.639954606 0.547348542 0.012141063 0.720366959 7.17E-05 4.144240101 -0.899730508 down SGLTVPT(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 3 SGLTVPTSPK 10 0 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 SGLTVPT(0.928)S(0.072)PK;SGLTVPT(0.853)S(0.147)PK;SGLTVPT(0.5)S(0.5)PK ;; 169.21 1.85E-06 4787100000 46665 38976 40038 36918.7 38997 33214.5 31122.6 29001.7 44668 42545 TRUE FALSE FALSE 41194.99944 40176.80436 42202.57539 38424.40416 36120.269 32580.98875 32323.00911 32303.1363 42826.76613 42291.94045 0.974062647 0.949987254 0.997886948 0.908551458 0.854069797 0.770382924 0.764282952 0.763813057 1.012646043 1 15.36809514 -5.689148546 1.28336932 0.986081167 0.757232934 0.965228776 0.018289549 0.051160202 0.166253962 0.002745086 0.007753873 2.05E-06 5.689148546 -0.228848233 S(ph)HSPSASQSGSQLR ddPTM_HeLa_CUDC101_4h_R1 1 SHSPSASQSGSQLR 14 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 S(0.917)HS(0.083)PSASQSGSQLR 142.57 0.00028672 54570000 2901.8 1143.4 1079.6 1019.3 2960.1 2504.7 1979.5 1547.7 2270.5 1724.7 TRUE FALSE FALSE 2561.655403 1178.626799 1137.966442 1060.87146 2741.73932 2456.927021 2055.849978 1723.883912 2176.909029 1714.441408 1.494163283 0.687469862 0.663753475 0.618785486 1.599202695 1.433077275 1.199136914 1.005507627 1.26974828 1 10.74352288 -5.688731916 24.99848818 1.107363572 1.310209508 0.13899199 0.31672089 106.497291 36613.48312 0.055067277 0.110134543 2.05E-06 5.688731916 0.202845936 S(ph)PHQLLSPSSFSPSATPSQK ddPTM_HeLa_CUDC101_4h_R1 1 SPHQLLSPSSFSPSATPSQK 20 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 0 S(1)PHQLLSPSSFSPSATPSQK 156.79 6.70E-06 37482000 3920.7 2398.8 2338.3 2617 4412.2 3897.2 3630.2 3589.7 3646.5 3862.3 TRUE FALSE FALSE 3461.121489 2472.704185 2464.715571 2723.732572 4086.720796 3822.867403 3770.21803 3998.336938 3496.189727 3839.326868 0.901491748 0.644046279 0.641965547 0.709429717 1.064436798 0.99571293 0.981999751 1.041416132 0.910625703 1 11.90663768 -5.687342202 25 0.885388844 1.016315347 0.304749998 0.129245266 66.23340239 22344.7897 0.02348368 0.046967357 2.05E-06 5.687342202 0.130926503 RAPFDLFENK ddPTM_HeLa_CUDC101_4h_R1 2 RAPFDLFENK 10 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ; ; 147.62 0.00067652 24433000 20503.2 14065.2 9321.5 14732.4 15133.6 13967.1 13706.1 11492.6 10216.1 7683.5 FALSE FALSE TRUE 18099.84598 14498.53214 9825.448486 15333.25095 14017.22448 13700.70084 14234.74887 12800.87113 9794.988034 7637.7982 2.369772741 1.898260698 1.286424206 2.007548583 1.835244152 1.793802413 1.863724138 1.675989702 1.282436087 1 12.89894109 -9.551463119 1.328619166 1.001376769 1.897204998 0.502059937 0.270765781 0.260829971 0.826919198 0.208376868 0.049626676 2.81E-10 9.551463119 0.89582823 RAPFDLFENK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 RAPFDLFENKK 11 2 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 1 ; RAPFDLFENK(1)K;RAPFDLFENK(1)K 196.16 2.21E-08 6249300 4467.6 1906.4 1877.27 1621.82 4331.6 3264 4221.4 3308.6 3827.4 2468.96 FALSE TRUE FALSE 3943.9147 1965.133924 1978.760895 1687.96483 4012.066498 3201.744638 4384.220812 3685.23765 3669.632952 2454.274516 1.606957443 0.8006985 0.806250842 0.687765292 1.634726055 1.304558482 1.786361217 1.501558862 1.495200691 1 11.26108091 RAPFDLFENKK ddPTM_HeLa_CUDC101_4h_R1 2 RAPFDLFENKK 11 2 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ; ; 82.831 0.016619 21458900 10142.8 8894.9 8400.2 9225.7 10330.1 9087.8 8921.9 8840.8 8864.5 8703.3 FALSE FALSE TRUE 8953.876359 9168.941326 8854.340221 9601.963923 9568.069103 8914.465356 9266.020672 9847.200936 8499.101558 8651.532385 1.03494687 1.059805468 1.02344184 1.109857017 1.105939235 1.030391491 1.071026526 1.138203095 0.98238106 1 13.07873997 -1.000000139 0.076292513 0.922727663 1.407322622 0.606899779 0.030137541 106.0758425 0.598511826 0.620473883 5.479219466 0.099999968 1.000000139 0.484594959 RAPFDLFENR ddPTM_HeLa_CUDC101_4h_R1 2 RAPFDLFENR 10 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 0 ; ; 144.17 0.00091815 54932000 17328.4 9789.9 4926.4 10573.2 10725.1 10377.7 8654.3 7813.3 4962 3408.5 FALSE FALSE TRUE 15297.19122 10091.51522 5192.736086 11004.4208 9933.93074 10179.76266 8988.09925 8702.73449 4757.46426 3388.22609 4.514808284 2.978406678 1.532582522 3.247841349 2.931897245 3.004452003 2.652744832 2.568522365 1.40411653 1 11.72631443 KAMT(ph)VGEY(ph)RHLANS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 KAMTVGEYRHLANSK 15 2 Q6B0I6 Q6B0I6 KDM4D Lysine-specific demethylase 4D 3 0 KAMT(1)VGEY(1)RHLANS(1)K 41.912 0.03828 7828500 2274.6 1878.4 2297.4 2161.1 2513.1 2465 2306.3 2115.8 2810.8 2518.4 TRUE FALSE FALSE 2007.974836 1936.271278 2421.604393 2249.238999 2327.71362 2417.984232 2395.254764 2356.65412 2694.937634 2503.420445 0.802092529 0.773450293 0.967318294 0.898466338 0.929813298 0.965872208 0.956792843 0.941373681 1.076502207 1 11.28968489 -5.68497835 1.662523429 0.896624645 0.955329073 0 0.085148809 0.806104654 4.487525509 0.013583693 0.033681818 2.07E-06 5.68497835 0.058704428 AS(ph)PEPPGPESSSR ddPTM_HeLa_CUDC101_4h_R1 2 ASPEPPGPESSSR 13 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 AS(1)PEPPGPESSSR;AS(0.999)PEPPGPESS(0.001)SR ; 147.7 0.00044839 450058000 3081.3 2462.72 2184.51 2104.95 2125.66 2019.92 1670.36 1632.92 2376.5 1969.81 TRUE FALSE FALSE 2720.114685 2538.593484 2302.611218 2190.798959 1968.854297 1981.393391 1734.786345 1818.805012 2278.539664 1958.093483 1.389164874 1.296461843 1.1759455 1.118842884 1.005495557 1.011899283 0.885956856 0.92886526 1.163652136 1 10.93523393 -5.68474835 1.439190243 1.198092724 0.926571412 0.599244848 0.096864462 0.342591606 1.415515049 0.023936998 0.063581042 2.07E-06 5.68474835 -0.271521312 KFNGEDIDTIS(ph)PTLGFNIK ddPTM_HeLa_CUDC101_4h_R1 2 KFNGEDIDTISPTLGFNIK 19 1 V9GYD0;P36404-2;P36404 V9GYD0 ARL2-SNX15;ARL2 ADP-ribosylation factor-like protein 2 1 0 KFNGEDIDT(0.002)IS(0.986)PT(0.012)LGFNIK;KFNGEDIDT(0.004)IS(0.921)PT(0.074)LGFNIK ; 127.54 2.40E-05 44710000 5331.5 6204.1 5894.3 5532 8167.1 6112.6 6668.7 7361.8 6179.1 5567.2 TRUE FALSE FALSE 4706.549652 6395.240967 6212.963687 5757.618871 7564.629304 5996.012339 6925.913993 8199.837555 5924.394883 5534.086047 0.850465571 1.155609239 1.122672043 1.040392004 1.366915736 1.083469301 1.251500959 1.481696794 1.070528147 1 12.43412936 -5.683082753 0.514349403 0.930362129 1.405645024 0.488263896 0.124427716 0.720353836 0.289842757 0.030714735 0.162413253 2.07E-06 5.683082753 0.475282895 KT(ph)LDELSQGTTTVK ddPTM_HeLa_CUDC101_4h_R1 1 KTLDELSQGTTTVK 14 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 0 KT(1)LDELSQGTTTVK 133.86 0.00010534 0 1001.4 728.16 562.37 712.4 1016.5 1106.1 985.37 689.83 804.17 754.47 TRUE FALSE FALSE 884.01741 750.5937465 592.7734233 741.4547513 941.5148202 1085.002985 1023.376051 768.3574588 771.0217722 749.9823789 1.178717574 1.000815176 0.790383134 0.988629563 1.255382589 1.446704637 1.364533461 1.024500682 1.028053184 1 9.550712889 -5.680861979 5.896993552 1.049094283 1.296034136 0.45856082 0.139399287 0.174381059 9.862082732 0.022329927 0.044915226 2.09E-06 5.680861979 0.246939852 GGPGAAPGGASPASSSSAASS(ph)PSSGR ddPTM_HeLa_CUDC101_4h_R1 2 GGPGAAPGGASPASSSSAASSPSSGR 26 0 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 1 0 GGPGAAPGGAS(0.004)PAS(0.373)S(0.004)S(0.011)S(0.007)AAS(0.142)S(0.457)PS(0.002)S(0.001)GR;GGPGAAPGGASPASSSSAAS(0.155)S(0.843)PS(0.002)SGR ; 379.87 0 32131000 4595.2 3914.2 4118 3729.1 4100.1 3438.3 3401.8 3125.79 3331.7 4241.7 TRUE FALSE FALSE 4056.557622 4034.791863 4340.631536 3881.188817 3797.643792 3372.720156 3533.008566 3481.617299 3194.365916 4216.47018 0.962074306 0.956912225 1.029446753 0.920482928 0.900668955 0.799891856 0.837906689 0.825718468 0.757592436 1 12.04182004 -5.680763227 1.792735023 0.982264613 0.822765191 0.228318693 0.075534218 0.082367164 0.534748154 0.003973244 0.009583513 2.09E-06 5.680763227 -0.159499422 SSS(ph)PVTELASR ddPTM_HeLa_CUDC101_4h_R1 4 SSSPVTELASR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.001)S(0.004)S(0.995)PVTELASR;SS(0.001)S(0.975)PVT(0.024)ELASR;SS(0.003)S(0.984)PVT(0.013)ELASR;S(0.023)S(0.078)S(0.9)PVTELASR ;;; 215.72 5.78E-24 853260000 18713.1 15999.4 14918.7 15411.1 16798 15212.6 15380.9 13309 17207.8 15771.2 TRUE FALSE FALSE 16519.57879 16492.32255 15725.25005 16039.63127 15558.84501 14922.445 15974.14647 14824.04276 16498.4872 15677.3922 1.053719813 1.051981244 1.003052666 1.023105824 0.992438335 0.951844848 1.018928803 0.945568151 1.052374463 1 13.93639798 -5.680744528 3.014998089 1.026439807 0.976014565 0.511262621 0.025881919 0.196477991 3.596228732 0.004143269 0.008758435 2.09E-06 5.680744528 -0.050425242 RGQS(ph)PLPR ddPTM_HeLa_CUDC101_4h_R1 3 RGQSPLPR 8 1 H3BTS1;H3BN52;Q9BQ65-3;Q9BQ65-2;Q9BQ65 H3BTS1 USB1 U6 snRNA phosphodiesterase 1 0 RGQS(1)PLPR;RGQS(1)PLPR;RGQS(1)PLPR ;; 82.417 0.020975 89016000 4931 3927.6 5350.1 4735.9 4277.1 3492.95 4147.2 3579.24 4870.8 4646 TRUE FALSE FALSE 4352.995655 4048.604701 5639.342589 4929.050472 3961.586854 3426.327798 4307.158893 3986.686214 4670.023562 4618.365385 0.942540334 0.876631527 1.221068954 1.067271656 0.857789829 0.741891884 0.932615446 0.863224514 1.011185381 1 12.1731666 -5.680656118 8.255558573 0.990725523 0.846162425 0.410403772 0.096681323 0.242158617 21.95112976 0.014494366 0.029024613 2.09E-06 5.680656118 -0.144563099 T(ph)AAILHGGSPDFVGNGK ddPTM_HeLa_CUDC101_4h_R1 1 TAAILHGGSPDFVGNGK 17 0 H0YME5;Q9P2K8-2;Q9P2K8;Q9P2K8-3 H0YME5 EIF2AK4 Eukaryotic translation initiation factor 2-alpha kinase 4 1 0 T(0.576)AAILHGGS(0.424)PDFVGNGK 133.48 0.0011678 17437000 2775.8 2251 2183.5 2296.5 2712.7 2710.5 2880.9 1913.1 2427 2223 TRUE FALSE FALSE 2450.424932 2320.350642 2301.546615 2390.161196 2512.589525 2658.801729 2992.017278 2130.879571 2326.958033 2209.777497 1.108901206 1.050038135 1.041528669 1.081629802 1.137032814 1.203198843 1.353990292 0.964295986 1.053028206 1 11.1096854 -5.680110926 2.383045618 1.052322154 1.189984774 0.255432305 0.091921247 0.26603267 3.066924339 0.013334218 0.029506523 2.09E-06 5.680110926 0.13766262 RPGAPSLS(ph)PAPR ddPTM_HeLa_CUDC101_4h_R1 4 RPGAPSLSPAPR 12 1 Q5QP82;Q5QP82-2 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 1 0 RPGAPS(0.023)LS(0.977)PAPR;RPGAPS(0.019)LS(0.981)PAPR;RPGAPS(0.002)LS(0.998)PAPR;RPGAPS(0.05)LS(0.95)PAPR ;;; 102.64 0.0050303 45758100 8139.3 6668.5 7168.39 7412.84 7363.59 6382.17 6847.3 6933.91 7091.31 7344.45 TRUE FALSE FALSE 7185.223592 6873.948581 7555.934847 7715.167656 6820.392636 6260.440741 7111.402655 7723.238287 6799.0032 7300.764885 0.984174084 0.941538139 1.034951127 1.056761556 0.934202477 0.857504774 0.974062686 1.057867006 0.931272724 1 12.8338319 -5.67947087 24.99995606 0.99566273 0.950176788 0.076936103 0.057891421 45.12047552 13757.71346 0.007902432 0.015804862 2.09E-06 5.67947087 -0.045485942 S(ph)GGGDLTLGLEPSEEEAPR ddPTM_HeLa_CUDC101_4h_R1 2 SGGGDLTLGLEPSEEEAPR 19 0 B4DTR1;P04626-3;P04626-2;P04626-5;P04626-4;P04626 B4DTR1 ERBB2 Receptor protein-tyrosine kinase;Receptor tyrosine-protein kinase erbB-2 1 0 S(1)GGGDLTLGLEPSEEEAPR;S(1)GGGDLTLGLEPSEEEAPR ; 324.06 1.07E-220 11180000 1604.08 977.17 829.58 1262.54 870.3 852.92 832.53 538.24 847.58 1190.23 TRUE FALSE FALSE 1416.052174 1007.275449 874.4296041 1314.031838 806.0997029 836.6519721 864.640961 599.511066 812.6423937 1183.150459 1.196848772 0.851350259 0.739068812 1.110621078 0.681316308 0.707139118 0.730795441 0.506707377 0.686846197 1 10.20841783 -5.679319338 0.566405784 1.086349522 0.543282218 0.186577398 0.185319437 0.625330634 0.314237635 0.033247704 0.16945912 2.09E-06 5.679319338 -0.543067303 VEVKEEEESSSNGTASQSTS(ph)PSQPR ddPTM_HeLa_CUDC101_4h_R1 1 VEVKEEEESSSNGTASQSTSPSQPR 25 1 Q92793;Q92793-2;I3L466 Q92793 CREBBP CREB-binding protein 1 0 VEVKEEEESSSNGT(0.006)AS(0.006)QS(0.026)T(0.123)S(0.62)PS(0.218)QPR 67.76 0.00065137 0 797.18 719.92 773.39 808.88 932.6 1068.1 748.59 829.86 1053.6 946.92 TRUE FALSE FALSE 703.7357688 742.0998819 815.2018028 841.8696227 863.803956 1047.727772 777.4633671 924.327908 1010.170162 941.2876777 0.747630916 0.78838797 0.866049585 0.894380796 0.917683272 1.113079239 0.825957234 0.981982374 1.073178993 1 9.878491899 -5.679174204 3.432971703 0.869524182 0.96558674 0.059946426 0.110728874 0.396064809 9.247042827 0.01705003 0.035442079 2.09E-06 5.679174204 0.096062558 TLSSFFT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 TLSSFFTPR 9 0 M0R0Q7;P18858-2;P18858;P18858-3;B4E135;F5GZ28 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 0 TLSSFFT(1)PR 127.51 0.018765 53111000 3384 2556.4 2599.7 2748.5 3314.4 2734.8 2362.8 921.87 2789.3 2784.9 TRUE FALSE FALSE 2987.33265 2635.159654 2740.247646 2860.59571 3069.903315 2682.638246 2453.933987 1026.811954 2674.323873 2768.335291 1.079107961 0.951893242 0.989853958 1.033327039 1.10893479 0.969043835 0.886429471 0.370913147 0.966040451 1 11.43480297 -4.14308871 1.796406755 1.031120306 0.002329682 0.937992728 0.049231525 0.199440039 0.501040282 0.007020568 0.381235518 7.19E-05 4.14308871 -1.028790624 down SPVDES(ph)GDEVQYGDVPVENGMAPFFEMK ddPTM_HeLa_CUDC101_4h_R1 1 SPVDESGDEVQYGDVPVENGMAPFFEMK 28 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;D6R9F5;F8WA26 Q8WX93-3 PALLD Palladin 1 0 S(0.127)PVDES(0.873)GDEVQYGDVPVENGMAPFFEMK 57.67 0.00080258 0 344.79 363.83 280.78 277.4 462.59 360.94 297.65 377.32 573.51 309.97 TRUE FALSE FALSE 304.3742389 375.0391711 295.9598161 288.713571 428.4656573 354.0556709 309.1304602 420.2725836 549.8696751 308.1262847 0.987823026 1.217160592 0.960514668 0.936997541 1.390552117 1.149060267 1.003258974 1.36396213 1.784559456 1 8.267377946 -5.678740636 0.458254543 0.989692656 1.255082091 0 0.287043743 1.764112305 0.545753215 0.038132361 0.208657472 2.10E-06 5.678740636 0.265389435 SS(ph)PVGGGPR ddPTM_HeLa_CUDC101_4h_R1 1 SSPVGGGPR 9 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 S(0.223)S(0.777)PVGGGPR 112.3 0.0090854 92627000 3254.7 1365.6 3073.3 3078.6 1896.6 1976.4 2400.3 919.34 3038.9 3633.4 TRUE FALSE FALSE 2873.189 1407.672517 3239.451894 3204.158615 1756.691597 1938.703463 2492.880375 1023.993949 2913.635256 3611.788375 0.795503142 0.389743908 0.89691077 0.88713908 0.486377222 0.536771057 0.690206656 0.283514382 0.806701543 1 11.81849765 -5.677114804 0.120555532 1.24996198 1.35E-16 0.360158176 0.18262208 12.54845039 0.459378511 1.427080201 3.430361226 2.10E-06 5.677114804 -1.24996198 GSPTDAEGS(ph)PGLSR ddPTM_HeLa_CUDC101_4h_R1 2 GSPTDAEGSPGLSR 14 0 Q8TER5;Q8TER5-3;G3V485;G3V3N2;G3V5C1;Q8TER5-4 Q8TER5;Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 GSPTDAEGS(1)PGLSR;GSPTDAEGS(1)PGLSR ; 196.37 2.01E-16 160079000 6886.9 6302.7 6229.5 6142.4 6289.3 5334.2 5305.5 5593.8 6644.6 6633.1 TRUE FALSE FALSE 6079.628022 6496.878716 6566.285613 6392.913622 5825.350869 5232.459022 5510.134912 6230.575581 6370.706776 6593.646026 0.922043434 0.985324158 0.995850488 0.969556691 0.883479466 0.793560801 0.835673448 0.944936315 0.966188775 1 12.68686072 -5.676586729 4.204369245 0.967371871 0.853597712 0.630617815 0.040830977 0.119658402 3.954838025 0.00667845 0.013638688 2.11E-06 5.676586729 -0.113774159 (ac)SET(ph)APAAPAAPAPAEKT(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 2 0 S(0.434)ET(0.567)APAAPAAPAPAEKT(1)PVK;S(0.447)ET(0.625)APAAPAAPAPAEKT(0.928)PVK ; 74 9.38E-05 17586600 6173.7 5006.3 6981.5 6333.2 5194.5 4558.3 3823.5 4505.4 5622.5 7132.7 TRUE FALSE FALSE 5450.028245 5160.538169 7358.941008 6591.49527 4811.312084 4471.358022 3970.973676 5018.276525 5390.73817 7090.274383 0.76866253 0.727833352 1.037892275 0.929653059 0.67857911 0.630632579 0.560059239 0.707769016 0.760300361 1 12.79162574 -5.676363562 4.862669969 0.889234602 0.630743875 0.537733101 0.102376718 0.128197947 5.309846258 0.016976717 0.034386735 2.11E-06 5.676363562 -0.258490727 GRNDS(ph)GEENVPLDLTR ddPTM_HeLa_CUDC101_4h_R1 5 GRNDSGEENVPLDLTR 16 1 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 GRNDS(1)GEENVPLDLTR;GRNDS(1)GEENVPLDLTR;GRNDS(1)GEENVPLDLTR;GRNDS(1)GEENVPLDLTR;GRNDS(1)GEENVPLDLTR ;;;; 144.82 0.00014608 138588000 10536.9 7860.5 8321.1 8205.5 7482.8 7162.13 6438 5534.13 8253 8979.4 TRUE FALSE FALSE 9301.780555 8102.672688 8770.963836 8540.155757 6930.808752 7025.524303 6686.315817 6164.112989 7912.807847 8925.990129 1.042100699 0.90776178 0.982632034 0.956774053 0.776475063 0.787086273 0.749083936 0.690580305 0.886490768 1 13.1237965 -5.675802699 0.810801434 1.01696198 0.698661907 0.744193495 0.057720691 0.158969374 0.185984431 0.007370914 0.029546216 2.11E-06 5.675802699 -0.318300073 SSS(ph)PVQVEEEPVR ddPTM_HeLa_CUDC101_4h_R1 2 SSSPVQVEEEPVR 13 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2;A0A0J9YVR0 Q8IZ21-3;A0A0J9YVR0 PHACTR4 Phosphatase and actin regulator 4 1 0 S(0.067)S(0.067)S(0.867)PVQVEEEPVR;S(0.038)S(0.006)S(0.956)PVQVEEEPVR ; 266.07 2.04E-70 695830000 5824.7 5565.1 4752.7 4585.9 5098 4421.5 4335.6 3973.3 5045.7 4728.3 TRUE FALSE FALSE 5141.937496 5736.554135 5009.645338 4772.932824 4721.930697 4337.167254 4502.825544 4425.604411 4837.71411 4700.175861 1.09398832 1.220497765 1.065842106 1.015479626 1.004628515 0.922767016 0.958012142 0.941582728 1.029262362 1 12.19849902 -5.673820221 1.875140423 1.061938885 0.943115184 0.510817173 0.057544822 0.281812454 2.003406016 0.010424985 0.024840939 2.12E-06 5.673820221 -0.118823701 ASSVSTKES(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 ASSVSTKESPAR 12 1 E7ETY2;Q13428-6;Q13428-7;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 ASSVSTKES(1)PAR;ASSVS(0.002)T(0.001)KES(0.997)PAR ; 211.82 7.88E-23 381250000 9197.6 6234.2 7630.2 7662.5 7373.7 5988 7600.9 5011.8 8560.3 7730.9 TRUE FALSE FALSE 8119.471271 6426.268313 8042.711692 7975.00987 6829.756841 5873.788877 7894.069259 5582.323054 8207.440811 7684.916263 1.056546486 0.836218391 1.046558143 1.037748441 0.88872235 0.764326985 1.027216041 0.726399984 1.067993525 1 12.90781382 -5.670946601 4.986902825 1.01371124 0.853808427 0.388646398 0.096302778 0.157581614 6.619351764 0.012924898 0.026172492 2.13E-06 5.670946601 -0.159902813 AASSS(ph)S(ph)PGSPVASSPSR ddPTM_HeLa_CUDC101_4h_R1 1 AASSSSPGSPVASSPSR 17 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 2 0 AAS(0.002)S(0.023)S(0.974)S(0.929)PGS(0.071)PVASSPSR 144.41 0.0016571 4095800 1678.4 1290.9 1241.5 1343.2 1805.5 2180.5 1621.8 1528.8 1006.9 1261.1 TRUE FALSE FALSE 1481.660496 1330.671099 1308.619245 1397.981502 1672.311862 2138.910595 1684.353369 1702.832412 965.3951558 1253.598921 1.181925472 1.061480731 1.043889894 1.115174462 1.334008696 1.706216047 1.343614246 1.35835504 0.770098904 1 10.29186013 -5.670566001 3.564090012 1.083295123 1.46476105 0.657541928 0.142755356 0.094389634 2.340705722 0.016400806 0.03405218 2.14E-06 5.670566001 0.381465927 S(ph)ADSVMAEQVALSR ddPTM_HeLa_CUDC101_4h_R1 2 SADSVMAEQVALSR 14 0 P11413-3 P11413-3 G6PD Glucose-6-phosphate 1-dehydrogenase 1 0 S(0.992)ADS(0.008)VMAEQVALSR;S(1)ADSVMAEQVALSR ; 127.66 0.00099945 9998700 933.84 750.74 722.27 625.6 792.64 557.9 638.74 469.19 854.04 761.2 TRUE FALSE FALSE 824.3766908 773.8694096 761.3181009 651.1146721 734.1685264 547.258987 663.3764158 522.6006931 818.8361097 756.6723485 1.089476432 1.022727223 1.006139715 0.86049751 0.970259489 0.723244332 0.876702336 0.690656523 1.082154134 1 9.563524915 -5.669182754 0.82345483 1.043301937 0.748953573 0.748791117 0.066710821 0.263991724 0.319552794 0.011466201 0.045721932 2.14E-06 5.669182754 -0.294348363 NSQEDSEDS(ph)EDKDVK ddPTM_HeLa_CUDC101_4h_R1 1 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 NSQEDS(0.208)EDS(0.792)EDKDVK 209.33 8.59E-23 33832000 1968.4 1658.8 1949.1 1750 1665.9 1426.8 1599.5 1222.2 1725.9 1737.8 TRUE FALSE FALSE 1737.667136 1709.905662 2054.474242 1821.372564 1543.009876 1399.586167 1661.193251 1361.330308 1654.757671 1727.463488 1.005906723 0.989836065 1.189301109 1.054362409 0.893222859 0.81019725 0.961637257 0.788051566 0.957911807 1 10.7544395 -5.668660754 5.342509401 1.020402668 0.862800856 0.562358918 0.073159744 0.127256672 5.813938723 0.010355602 0.020917134 2.14E-06 5.668660754 -0.157601812 TLS(ph)MIEEEIR ddPTM_HeLa_CUDC101_4h_R1 4 TLSMIEEEIR 10 0 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5;C9JVY5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 T(0.007)LS(0.993)MIEEEIR;T(0.002)LS(0.998)MIEEEIR;T(0.004)LS(0.996)MIEEEIR;T(0.001)LS(0.999)MIEEEIR ;;; 114.76 0.013139 31458400 9052.1 8619 7833.9 8338.8 11004.2 10841.7 10753.3 9422.6 9128 9118.7 TRUE FALSE FALSE 7991.02656 8884.541174 8257.42433 8678.892307 10192.44209 10634.91264 11168.05838 10495.2307 8751.739976 9064.461567 0.881577632 0.980151012 0.910966886 0.957463633 1.124439881 1.173253652 1.232070797 1.157843808 0.965500257 1 13.14600561 -5.667750794 2.721353715 0.942746294 1.189962341 0.902183643 0.036329352 0.073928609 1.106681933 0.007187689 0.015556339 2.15E-06 5.667750794 0.247216046 IGQQVDREPGDVAT(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 2 IGQQVDREPGDVATPPR 17 1 H3BT22;Q9Y5N6 H3BT22 ORC6 Origin recognition complex subunit 6 1 0 IGQQVDREPGDVAT(1)PPR;IGQQVDREPGDVAT(1)PPR ; 108.25 0.0014519 255470000 3663.6 3692.8 2952.7 2895.65 3524.6 2619.11 2760.2 2543.43 3203.2 3366.5 TRUE FALSE FALSE 3234.158362 3806.570791 3112.331893 3013.747123 3264.59728 2569.15484 2866.661839 2832.96379 3071.16274 3346.475908 0.966437067 1.137486387 0.930032661 0.900573381 0.97553288 0.767719509 0.85662109 0.846551378 0.91773042 1 11.70842691 -5.667471789 1.234033382 0.993093764 0.82836238 0.482739223 0.068627296 0.270945475 0.80776633 0.010015867 0.029527082 2.15E-06 5.667471789 -0.164731385 T(ph)GSSSPPGGPPKPGSQLDSMLGSLQSDLNK ddPTM_HeLa_CUDC101_4h_R1 1 TGSSSPPGGPPKPGSQLDSMLGSLQSDLNK 30 1 F5GZ78;A0A1B0GTU4;P49023;P49023-2;P49023-3;P49023-4 F5GZ78 PXN Paxillin 1 0 T(0.242)GS(0.242)S(0.214)S(0.214)PPGGPPKPGS(0.067)QLDS(0.02)MLGS(0.001)LQSDLNK 52.674 0.0077116 28978000 3184.5 2994.5 2881.3 2932.8 3691 3917.9 2971.3 3415.2 3915.9 3376.3 TRUE FALSE FALSE 2811.217737 3086.756996 3037.071793 3052.412261 3418.722284 3843.172585 3085.904036 3803.972563 3754.484945 3356.217617 0.837614856 0.919713007 0.904909079 0.90947984 1.018623544 1.145090403 0.919458864 1.133410582 1.118665525 1 11.71262055 -5.66512098 4.452247522 0.918842312 1.055507321 0.208374737 0.092869745 0.167976977 5.903639286 0.011426985 0.023305784 2.16E-06 5.66512098 0.13666501 DGES(ph)DGFADEEES(ph)GEEGEEDQEEGREPGAGR ddPTM_HeLa_CUDC101_4h_R1 2 DGESDGFADEEESGEEGEEDQEEGREPGAGR 31 1 P48681 P48681 NES Nestin 2 0 DGES(1)DGFADEEES(1)GEEGEEDQEEGREPGAGR;DGES(1)DGFADEEES(1)GEEGEEDQEEGREPGAGR ; 112.12 6.84E-11 34601000 2789.49 1481.87 1844.33 1771.4 1852.9 1670.14 1651.86 1451.39 1681.3 1322.92 TRUE FALSE FALSE 2462.510211 1527.524658 1944.040059 1843.645349 1716.215258 1638.284862 1715.572794 1616.610371 1611.996102 1315.051213 1.872558412 1.161570472 1.478299886 1.401957072 1.305055835 1.245795484 1.304567287 1.229313623 1.22580481 1 10.36090327 -5.66502835 3.469693421 1.405890021 1.265535262 0.008983269 0.21982237 0.761034337 17.9368768 0.047952796 0.10006444 2.16E-06 5.66502835 -0.140354759 SQSFT(ph)HSPSGDPK ddPTM_HeLa_CUDC101_4h_R1 1 SQSFTHSPSGDPK 13 0 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 S(0.256)QS(0.256)FT(0.485)HS(0.004)PSGDPK 105.17 0.0087396 26013000 7253.8 5407.7 5389 4728.9 8756.8 7556.8 8363.9 7799.2 6633.2 6733.4 TRUE FALSE FALSE 6403.52056 5574.304827 5680.345641 4921.764982 8110.82831 7412.66663 8686.498425 8687.029403 6359.776688 6693.349437 0.956698977 0.832812463 0.848655175 0.735321684 1.211774222 1.10746745 1.297780507 1.297859836 0.950163554 1 12.70851262 -5.663921768 9.525011189 0.940766367 1.226810021 0.743598082 0.095186745 0.150798471 13.48880332 0.015518255 0.031057096 2.17E-06 5.663921768 0.286043654 VLTANSNPSS(ph)PSAAK ddPTM_HeLa_CUDC101_4h_R1 1 VLTANSNPSSPSAAK 15 0 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 1 0 VLTANSNPS(0.015)S(0.985)PSAAK 219.52 2.17E-32 69924000 5140.3 4096.1 3714.6 4005.8 3208.1 3407.4 3046.3 2211.4 3920 4418.8 TRUE FALSE FALSE 4537.761826 4222.295986 3915.422512 4169.173839 2971.444854 3342.409522 3163.796811 2463.136837 3758.415941 4392.516781 1.033066475 0.961247548 0.891384759 0.949153765 0.676478885 0.76093267 0.720269715 0.560757525 0.855640656 1 12.10083208 -5.661172891 0.673265482 1.018655448 0.602371948 0.722675724 0.077694979 0.225576901 0.169394997 0.010898426 0.051085792 2.18E-06 5.661172891 -0.416283501 (ac)MAPS(ph)RNGMVLK ddPTM_HeLa_CUDC101_4h_R1 1 MAPSRNGMVLK 11 1 P26373;P26373-2;J3QSB4;H3BTH3 P26373 RPL13 60S ribosomal protein L13 1 0 MAPS(1)RNGMVLK 63.565 0.034046 8291400 502.33 543.88 405.12 572.73 689.64 697.91 776.87 659.99 619.02 446.15 TRUE FALSE FALSE 443.4476389 560.6362981 427.0220126 596.088405 638.7666312 684.5985295 806.8341361 735.1205938 593.5037336 443.49628 0.999890324 1.264128525 0.962853652 1.344066302 1.440297608 1.543639847 1.819257957 1.65755752 1.338238358 1 8.792778193 -5.659876089 0.768863148 1.002024679 1.787833972 0.717414119 0.146670094 0.15831713 0.162749926 0.01683027 0.071568977 2.19E-06 5.659876089 0.785809294 GPS(ph)SVEDIK ddPTM_HeLa_CUDC101_4h_R1 1 GPSSVEDIK 9 0 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 1 0 GPS(0.603)S(0.397)VEDIK 96.171 0.021331 156300000 6144.8 5101.2 5321.6 5038.6 5537.5 4583.8 4562.5 4696.8 5675.3 5469.2 TRUE FALSE FALSE 5424.515859 5258.361926 5609.301793 5244.095887 5129.009657 4496.371652 4738.477153 5231.464727 5441.361732 5436.668955 0.997764606 0.96720289 1.031753421 0.96457885 0.943410331 0.827045327 0.871577282 0.962255523 1.000863171 1 12.40850727 -5.65875678 2.575326209 0.997742156 0.885730052 0.63881219 0.035848701 0.117136142 1.571981965 0.004983929 0.010956765 2.19E-06 5.65875678 -0.112012104 SNATNSSYS(ph)PTTGR ddPTM_HeLa_CUDC101_4h_R1 2 SNATNSSYSPTTGR 14 0 Q13009-2;Q13009 Q13009-2 TIAM1 T-lymphoma invasion and metastasis-inducing protein 1 1 0 SNATNS(0.003)S(0.007)YS(0.913)PT(0.058)T(0.02)GR;SNAT(0.015)NS(0.032)S(0.018)YS(0.865)PT(0.058)T(0.012)GR ; 115.38 0.0022713 5157500 1951.45 1722.48 1467.85 1663.53 1595.95 1578.87 1428.17 1286.67 1642.68 1701.47 TRUE FALSE FALSE 1722.703989 1775.547567 1547.206411 1731.375944 1478.219948 1548.755685 1483.254995 1433.139312 1574.968035 1691.349581 1.0185381 1.04978154 0.914776241 1.02366534 0.87398842 0.915692239 0.876965361 0.847334772 0.931190129 1 10.72395916 -5.656540031 0.884808515 1.010534652 0.858065637 0.534032793 0.046684713 0.255452925 0.363797184 0.006182878 0.023585774 2.21E-06 5.656540031 -0.152469015 FSVPSGSS(ph)PGSQSDAEPR ddPTM_HeLa_CUDC101_4h_R1 1 FSVPSGSSPGSQSDAEPR 18 0 Q8TEP8;K7ELX0 Q8TEP8 CEP192 Centrosomal protein of 192 kDa 1 0 FSVPS(0.106)GS(0.197)S(0.638)PGS(0.019)QS(0.04)DAEPR 93.427 0.0039703 14901000 3172.3 2928.3 3062.1 2885.9 3074.3 2688.4 2656.8 2847.1 3343.5 3023.2 TRUE FALSE FALSE 2800.447803 3018.517452 3227.646388 3003.599476 2847.515014 2637.123249 2759.273666 3171.202356 3205.679515 3005.217872 0.931861822 1.004425496 1.074014107 0.999461471 0.947523652 0.87751483 0.91816094 1.055232097 1.066704529 1 11.55325387 -5.655094656 7.098881759 0.980905954 0.941578962 0.080272225 0.061054419 0.452717822 27.21209181 0.008660897 0.017380608 2.21E-06 5.655094656 -0.039326992 ASAGRLT(ph)PESQSK ddPTM_HeLa_CUDC101_4h_R1 1 ASAGRLTPESQSK 13 1 A0A0D9SGJ6;J3KQV8;O43426;H7BZ56;H7BZC2;J3KPK1;C9JFZ1;O43426-4;O43426-2 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 AS(0.004)AGRLT(0.883)PES(0.113)QSK 128.71 0.02211 7697000 3121.4 2529 2796.7 2908.5 2722.6 2540.2 2100.4 2526.4 2675.7 2951 TRUE FALSE FALSE 2755.514224 2606.915492 2947.898062 3027.121202 2521.759222 2491.749917 2181.413132 2813.995164 2565.406513 2933.447321 0.939343347 0.888686657 1.004926197 1.031933037 0.859657238 0.849427191 0.74363467 0.959279256 0.874536418 1 11.51838137 -5.654531932 6.758163768 0.970263667 0.84271584 0.345704316 0.067963945 0.136802441 7.772229946 0.008676505 0.017427269 2.22E-06 5.654531932 -0.127547827 TPPRDLPT(ph)IPGVTSPSSDEPPMEASQSHLR ddPTM_HeLa_CUDC101_4h_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 T(0.234)PPRDLPT(0.668)IPGVT(0.041)S(0.017)PS(0.02)S(0.02)DEPPMEASQSHLR 43.451 0.025922 17699000 940.64 741.1 433.44 624.35 956.45 848.27 919.16 836.06 834.66 735.06 TRUE FALSE FALSE 830.3796051 763.9324126 456.8730775 649.8136917 885.894589 832.0906631 954.6123091 931.2336909 800.2549615 730.6878304 1.136435521 1.045497654 0.625264386 0.889317797 1.212411857 1.138777229 1.306457107 1.27446175 1.095207732 1 9.513111369 -5.654478199 7.588114725 1.016963357 1.234491587 0.429972164 0.143977199 0.231963082 14.9539419 0.023622337 0.047361143 2.22E-06 5.654478199 0.21752823 AAHVPENS(ph)DTEQDVLTVKPVR ddPTM_HeLa_CUDC101_4h_R1 3 AAHVPENSDTEQDVLTVKPVR 21 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 0 AAHVPENS(1)DTEQDVLTVKPVR;AAHVPENS(0.947)DT(0.053)EQDVLTVKPVR;AAHVPENS(0.997)DT(0.003)EQDVLTVKPVR ;; 155.24 2.25E-07 111754000 6295.1 5592.4 5102.7 4953.6 5020.2 4229.6 4016.84 3997.42 5692 6546.9 TRUE FALSE FALSE 5557.197921 5764.695215 5378.567397 5155.629219 4649.869848 4148.927427 4171.770864 4452.470135 5457.373351 6507.958748 0.853907982 0.885791604 0.826459971 0.792203734 0.714489754 0.637515938 0.641026015 0.684157707 0.838569137 1 12.66798939 -5.654388219 0.210808782 1.03496007 0.446183419 0.734530513 0.057220453 1.336911456 0.099085689 0.05728726 0.224051655 2.22E-06 5.654388219 -0.588776651 SST(ph)PSDINSPR ddPTM_HeLa_CUDC101_4h_R1 1 SSTPSDINSPR 11 0 Q674X7-3;A0A1B0GWK2;Q674X7-4;Q674X7-2;Q674X7;Q674X7-5 Q674X7-3 KAZN Kazrin 1 0 S(0.046)S(0.046)T(0.901)PS(0.007)DINSPR 129.74 0.010306 11816000 3196.6 2867.5 2437.5 2771.8 2382.9 2058.8 2022.7 1616 2399.2 2901.5 TRUE FALSE FALSE 2821.899394 2955.844276 2569.278623 2884.845985 2207.118214 2019.53182 2100.716217 1799.958908 2300.303961 2884.241749 0.978385184 1.024825425 0.890798638 1.000209496 0.765233433 0.700195059 0.728342628 0.624066588 0.79754201 1 11.49397638 -5.653889599 2.958539429 0.985794061 0.690545785 0.720339 0.073274913 0.049206069 0.863855362 0.005977869 0.012824938 2.22E-06 5.653889599 -0.295248276 LPS(ph)PGLHGQR ddPTM_HeLa_CUDC101_4h_R1 1 LPSPGLHGQR 10 0 P10070;P10070-4;P10070-3;P10070-2;P10070-1 P10070 GLI2 Zinc finger protein GLI2 1 0 LPS(1)PGLHGQR 103.46 0.00093346 0 1431.4 1777.1 1337.9 1491.3 1478.4 1265.8 1128 1501.8 1331.1 1676.5 TRUE FALSE FALSE 1263.613462 1831.850345 1410.230921 1552.12166 1369.341377 1241.656974 1171.507338 1672.758842 1276.231495 1666.528103 0.758231115 1.099201592 0.846208905 0.931350427 0.821673139 0.745056127 0.702962846 1.003738754 0.765802564 1 10.70262993 -5.653844311 5.754394525 0.90038414 0.802535341 0.095345286 0.120602865 0.363742995 17.23482357 0.018314126 0.036940997 2.22E-06 5.653844311 -0.097848799 ATRPASTSQPDPS(ph)PDR ddPTM_HeLa_CUDC101_4h_R1 2 ATRPASTSQPDPSPDR 16 1 P20749;H7C0A2 P20749 BCL3 B-cell lymphoma 3 protein 1 0 ATRPASTSQPDPS(1)PDR;ATRPAST(0.001)SQPDPS(0.998)PDR ; 154.31 0.00058992 13220900 2623.6 2324.9 2062.16 2229.1 2195.01 2024.16 1832.65 1759.7 2396 2338.8 TRUE FALSE FALSE 2316.065585 2396.527413 2173.646607 2320.012333 2033.088485 1985.55252 1903.335924 1960.017135 2297.235866 2324.888714 0.996204924 1.030813819 0.934946518 0.997902532 0.874488518 0.854041963 0.818678293 0.843058476 0.988105733 1 11.18294594 -5.653106964 1.646259609 0.997789633 0.831216967 0.882524928 0.025674947 0.074741899 0.406341205 0.003512527 0.008941764 2.22E-06 5.653106964 -0.166572666 RQLQEDQENNLQDNQTSNSS(ph)PCR ddPTM_HeLa_CUDC101_4h_R1 2 RQLQEDQENNLQDNQTSNSSPCR 23 1 Q92576-2;Q92576 Q92576-2 PHF3 PHD finger protein 3 1 0 RQLQEDQENNLQDNQT(0.072)S(0.085)NS(0.085)S(0.759)PCR;RQLQEDQENNLQDNQT(0.005)S(0.034)NS(0.204)S(0.757)PCR ; 127.73 9.67E-08 9877700 3876.8 2538.09 3685 3254.8 3040.6 2695.5 2753.13 2095.12 4190.3 3258.62 TRUE FALSE FALSE 3422.367381 2616.285545 3884.222247 3387.544812 2816.300996 2644.087829 2859.319146 2333.619992 4017.57406 3239.237583 1.056534846 0.807685598 1.199116195 1.04578461 0.869433292 0.81626857 0.882713624 0.720422609 1.24028385 1 11.66143857 -5.651428294 4.117397507 1.024561024 0.818092939 0.479252029 0.118421567 0.134864761 4.157279516 0.013454815 0.027688773 2.23E-06 5.651428294 -0.206468085 LLELKSPT(ph)ELMK ddPTM_HeLa_CUDC101_4h_R1 1 LLELKSPTELMK 12 1 Q5VT06;H0Y7F7 Q5VT06 CEP350 Centrosome-associated protein 350 1 0 LLELKS(0.306)PT(0.694)ELMK 142.1 0.020196 11249000 1498.2 1592.6 1447.6 1297.1 1481.1 1178.7 1305.6 1131 1514.4 1475.7 TRUE FALSE FALSE 1322.583267 1641.666118 1525.861635 1350.001345 1371.842204 1156.218261 1355.957429 1259.748468 1451.975791 1466.922471 0.901604068 1.11912262 1.040178786 0.920294952 0.93518385 0.788193162 0.924355211 0.858769631 0.989810859 1 10.51857691 -5.651026579 2.442687903 0.972440718 0.86455207 0.434293848 0.067009719 0.28060712 3.388675517 0.011115738 0.024830649 2.23E-06 5.651026579 -0.107888647 DAPIS(ph)PASIASSSSTPSSK ddPTM_HeLa_CUDC101_4h_R1 4 DAPISPASIASSSSTPSSK 19 0 Q04727-4;Q04727;Q04727-3;H7C4E4;H0Y5S0 Q04727-4 TLE4 Transducin-like enhancer protein 4 1 0 DAPIS(0.724)PAS(0.264)IAS(0.01)S(0.001)S(0.001)STPSSK;DAPIS(0.969)PAS(0.025)IAS(0.004)S(0.001)S(0.001)STPSSK;DAPIS(0.999)PAS(0.001)IASSSSTPSSK;DAPIS(0.895)PAS(0.039)IAS(0.023)S(0.032)S(0.008)S(0.003)T(0.001)PSSK ;;; 124.98 4.94E-05 53323000 8013.03 7084.82 6242.11 6593.53 7651.25 7744.06 6497.32 6191.07 7439.35 6926.15 TRUE FALSE FALSE 7073.75477 7303.094907 6579.577348 6862.442653 7086.832531 7596.354958 6747.923809 6895.836384 7132.696844 6884.952952 1.027422383 1.060732725 0.955645942 0.996730508 1.029321853 1.103327069 0.980097301 1.001580756 1.035983382 1 12.74923108 -5.649571686 9.982729446 1.011451767 1.030601887 0.036002325 0.039280757 0.826509118 69.74572714 0.005613215 0.011232354 2.24E-06 5.649571686 0.01915012 RQSSGSATNVAS(ph)TPDNR ddPTM_HeLa_CUDC101_4h_R1 1 RQSSGSATNVASTPDNR 17 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 RQSSGSATNVAS(0.5)T(0.5)PDNR 73.296 0.011351 603130 54.033 207.07 231.46 38.91 177.46 223.35 256.16 191.71 218.01 101.58 TRUE FALSE FALSE 47.69933365 213.4495813 243.9734277 40.49691798 164.3691294 219.0899709 266.040177 213.5334915 209.0235355 100.9757976 0.472383826 2.113868731 2.41615747 0.401055688 1.627807189 2.169727558 2.634692503 2.114699725 2.070035993 1 6.657865732 -5.649285938 0.430083056 0.755676426 2.724133545 0.003697144 0.758648501 1.418800114 0.376543749 0.211675171 1.203940992 2.24E-06 5.649285938 1.96845712 NLDPDPEPPS(ph)PDS(ph)PTETFAAPAEVR ddPTM_HeLa_CUDC101_4h_R1 1 NLDPDPEPPSPDSPTETFAAPAEVR 25 0 Q9BUA3;H0YGY5 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 2 0 NLDPDPEPPS(0.989)PDS(0.91)PT(0.057)ET(0.043)FAAPAEVR 63.848 0.010559 4465700 990.91 1249.2 1169 1094.3 1358.7 1386.1 1181.2 1337.8 1291.1 1264.8 TRUE FALSE FALSE 874.7570319 1287.686371 1232.199676 1138.930284 1258.471408 1359.662452 1226.75928 1490.089744 1237.880312 1257.276913 0.695755265 1.024186762 0.980054325 0.905870673 1.000950065 1.081434358 0.975727198 1.185172279 0.98457253 1 10.29608672 -5.648033019 0.75213727 0.867754911 1.105623268 0.229830706 0.104353005 0.781134318 0.75934753 0.024261699 0.106333006 2.25E-06 5.648033019 0.237868357 S(ph)PQHFHRPDQGINIYR ddPTM_HeLa_CUDC101_4h_R1 2 SPQHFHRPDQGINIYR 16 1 O14639-3;O14639-5;J3QSX6;O14639-4;H0Y7N6;F6XFR5 O14639-3 ABLIM1 Actin-binding LIM protein 1 1 0 S(1)PQHFHRPDQGINIYR;S(1)PQHFHRPDQGINIYR ; 103.14 0.0015057 28322000 4264.3 3245.31 2907.94 3363.19 3256.96 2894.29 2994.77 2578.99 3182.01 2970.21 TRUE FALSE FALSE 3764.445218 3345.294154 3065.152032 3500.355425 3016.70055 2839.08624 3110.279282 2872.571797 3050.846201 2952.543059 1.27498402 1.133021293 1.038139655 1.185539162 1.02172957 0.961573188 1.053423852 0.972914447 1.033294397 1 11.52774238 -5.646240907 6.353994152 1.128834029 1.000348792 0.294640119 0.079819203 0.239451817 12.46491698 0.015630012 0.031445915 2.26E-06 5.646240907 -0.128485238 YSLS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 YSLSPSK 7 0 P49792;A6NKT7;J3KNE0;J3KQ37;O14715;Q99666;Q7Z3J3;P0DJD1;P0DJD0;A0A1W2PNU4;F8VYC4;A0A286YES2;Q99666-2;F8W705 P49792 RANBP2;RGPD3;RGPD8;RGPD5;RGPD4;RGPD2;RGPD1 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 1 1 0 YSLS(0.967)PS(0.033)K;YS(0.021)LS(0.939)PS(0.04)K ; 131.11 0.01069 385190000 21589 11509.7 7203.1 12975.6 11590.4 11015.2 11148.7 9997.1 6351.4 5627 TRUE FALSE FALSE 19058.37015 11864.30021 7592.521374 13504.80105 10735.39928 10805.10341 11578.70909 11135.12945 6089.592604 5593.530354 3.40721672 2.121075504 1.357375556 2.414360913 1.919252888 1.93171445 2.070018103 1.990715836 1.088685002 1 12.44954341 -5.644875457 16.30274491 2.116423623 1.981190645 0 0.681775241 8.683232119 1190.693971 0.133151762 0.266305781 2.27E-06 5.644875457 -0.135232978 KKEPAITSQNS(ph)PEAR ddPTM_HeLa_CUDC101_4h_R1 2 KKEPAITSQNSPEAR 15 2 E5RIS7;A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193 E5RIS7 TCEA1 Transcription elongation factor A protein 1 1 0 KKEPAITSQNS(1)PEAR;KKEPAITS(0.015)QNS(0.985)PEAR ; 154.51 0.00087483 1496768400 8679.5 7804.4 8262.1 7921.3 8511.1 7450.2 7556.7 7602.7 8023.3 8476.4 TRUE FALSE FALSE 7662.102167 8044.844314 8708.774117 8244.364853 7883.25311 7308.099848 7848.16445 8468.160637 7692.576178 8425.981996 0.909342338 0.954766378 1.033561919 0.978445581 0.935588649 0.867329155 0.931424308 1.005005783 0.91295901 1 13.04062912 -5.644396426 6.738094703 0.963630915 0.929054158 0.086733844 0.046495672 0.433218304 23.95136467 0.007486173 0.015041584 2.27E-06 5.644396426 -0.034576757 STS(ph)ESSASFPR ddPTM_HeLa_CUDC101_4h_R1 1 STSESSASFPR 11 0 Q5T011-5;Q5T011 Q5T011-5 SZT2 Protein SZT2 1 0 S(0.001)T(0.004)S(0.984)ES(0.004)S(0.004)AS(0.002)FPR 103.43 0.010489 3743700 1546.6 1150.2 1383.5 1347.2 1536.5 1861 1642 1465.7 1300.9 1221.6 TRUE FALSE FALSE 1365.309892 1185.636299 1458.296195 1402.144639 1423.155456 1825.504526 1705.33249 1632.549363 1247.276351 1214.333869 1.124328265 0.976367644 1.200902184 1.15466156 1.171963899 1.503297052 1.404335771 1.344399102 1.027128027 1 10.24594942 -5.643538973 1.197608063 1.059428122 1.422538821 0.778340408 0.079090077 0.168434674 0.469168758 0.013204595 0.040548961 2.27E-06 5.643538973 0.363110699 RCATPVIIDEILPSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 RCATPVIIDEILPSKK 16 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 0 1 RCATPVIIDEILPSK(1)K 133.25 0.0085072 385180 364.36 374.14 453.38 337.27 657.29 440.31 560.06 574.7 346.98 117.7 FALSE TRUE FALSE 321.6502731 385.6668099 477.8910942 351.0253284 608.8030262 431.9118204 581.6617018 640.121525 332.6773375 116.9999152 2.749149627 3.296299911 4.084542228 3.000218658 5.203448441 3.691556697 4.971471142 5.471128112 2.843398109 1 6.870363674 -6.864121727 0.191821296 2.40E-19 6.600947419 0.637801982 0.777616569 0.833998147 0.118464546 1.417201784 2.080101204 1.37E-07 6.864121727 6.600947419 RCEAFGWHAIIVDGHSVEELCK ddPTM_HeLa_CUDC101_4h_R1 1 RCEAFGWHAIIVDGHSVEELCK 22 1 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 0 0 47.822 0.01847 11040000 2020.1 1772.3 1403.3 1507.9 2098.9 2121.4 1835 1690.8 2069.7 1031.5 FALSE FALSE TRUE 1783.30694 1826.902462 1479.166643 1569.39868 1944.068329 2080.937829 1905.776565 1883.273838 1984.38609 1025.364592 1.739193019 1.781710112 1.442576284 1.530576238 1.895977629 2.02946137 1.858633094 1.83668702 1.935298044 1 10.00192127 -10.7194353 0.247510378 2.22E-12 1.898042496 0 0.329834802 4.278165557 0.187945922 2.558182432 0.124684275 1.91E-11 10.7194353 1.898042496 ENFS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 1 ENFSPER 7 0 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 ENFS(1)PER 97.597 0.02469 197600000 4076 3571.4 3283.6 3462.3 3622.9 3200.4 3141.8 2875.6 3198.3 3678.8 TRUE FALSE FALSE 3598.217459 3681.430601 3461.121348 3603.507559 3355.645885 3139.357702 3262.980278 3202.94668 3066.46472 3656.918334 0.983947994 1.006702984 0.946458475 0.985394595 0.917615757 0.858470826 0.892275949 0.875859505 0.838537927 1 11.83641269 -5.643444529 2.375397594 0.989972158 0.876621388 0.258737318 0.050949853 0.063174584 0.721050103 0.002579363 0.005825149 2.27E-06 5.643444529 -0.11335077 HAPS(ph)PEPAVQGTGVAGVPEESGDAAAIPAKK ddPTM_HeLa_CUDC101_4h_R1 3 HAPSPEPAVQGTGVAGVPEESGDAAAIPAKK 31 1 P13051 P13051 UNG Uracil-DNA glycosylase 1 0 HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAKK;HAPS(0.999)PEPAVQGT(0.001)GVAGVPEESGDAAAIPAKK;HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAKK ;; 144.89 1.78E-16 184855000 6314 5638 5902.5 5564.3 6075.1 5286.5 4569.6 5729.2 6662.8 6260.5 TRUE FALSE FALSE 5573.882491 5811.700097 6221.607004 5791.236205 5626.951976 5185.66882 4745.851003 6381.38897 6388.156564 6223.262268 0.895652835 0.933867134 0.99973402 0.930578844 0.904180434 0.833271779 0.762598586 1.025408973 1.02649644 1 12.60345533 -5.642337406 2.841323748 0.951382623 0.863449725 0.235525614 0.071783777 0.292096186 4.743284429 0.010303496 0.022385371 2.28E-06 5.642337406 -0.087932897 RCVK(ac)VLAGQEYAAK(ac)IINTK ddPTM_HeLa_CUDC101_4h_R1 1 RCVKVLAGQEYAAKIINTK 19 3 A0A5F9ZHY2;A0A5K1VW76;A0A5F9ZHM9;A0A5F9ZH21;A0A5F9ZHR5;D6RFJ0;A0A5F9ZH50;Q9UQM7;Q9UQM7-2 A0A5F9ZHY2 CAMK2A Calcium/calmodulin-dependent protein kinase type II subunit alpha 0 2 RCVK(1)VLAGQEYAAK(1)IINTK 52.731 0.039901 1783600 348.38 744.15 1174 2069.7 1846.2 1637.3 1891.6 1754.1 97.209 79.513 FALSE TRUE FALSE 307.5434245 767.0763795 1237.469991 2154.111312 1710.009504 1606.07123 1964.559646 1953.779654 93.20200388 79.04005314 3.890982006 9.704907183 15.65623936 27.25341427 21.63472108 20.31971344 24.85524196 24.71885552 1.179174357 1 6.304512012 -6.801829355 1.463208476 2.166168057 23.64645194 0.95050537 2.171756064 0.055134867 0.238105309 0.395336097 0.57189921 1.58E-07 6.801829355 21.48028388 SLS(ph)MVDLQDAR ddPTM_HeLa_CUDC101_4h_R1 2 SLSMVDLQDAR 11 0 H0Y3A3;A0A3B3ITG3;Q5VWQ8-3;Q5VWQ8-4;Q5VWQ8-2;Q5VWQ8-5;Q5VWQ8 H0Y3A3 DAB2IP Disabled homolog 2-interacting protein 1 0 S(0.077)LS(0.923)MVDLQDAR;S(0.001)LS(0.999)MVDLQDAR ; 194.86 3.95E-16 20923000 3678.4 2868.7 2849.2 2747.8 4130.7 4401.7 3750.1 4002.7 3288.6 2692.3 TRUE FALSE FALSE 3247.223528 2957.081247 3003.23637 2859.867161 3825.986491 4317.744906 3894.742613 4458.351189 3153.042516 2676.28608 1.213331995 1.104919713 1.122165673 1.068595462 1.42958801 1.61333459 1.455278882 1.665872427 1.178141059 1 11.38601662 -5.640650555 3.636415739 1.102918677 1.561760554 0.887342706 0.075525466 0.063926824 1.621400702 0.013426876 0.028087812 2.29E-06 5.640650555 0.458841878 RDCLVKLECFRFLPPEDTPPPAQGEALLGGLELIK ddPTM_HeLa_CUDC101_4h_R1 1 RDCLVKLECFRFLPPEDTPPPAQGEALLGGLELIK 35 3 O75052-2;O75052-3;O75052 O75052-2 NOS1AP Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein 0 0 32.855 0.034417 2877500 1755 1904.6 2017.2 1938 2286.9 1941.9 1931.9 1911.1 2166 1682.6 FALSE FALSE TRUE 1549.28156 1963.278468 2126.255934 2017.040017 2118.199943 1904.861493 2006.41403 2128.651899 2076.716563 1672.59182 0.92627594 1.173794135 1.271234205 1.205936794 1.266417734 1.138868115 1.199583787 1.272666692 1.241615879 1 10.7078697 -7.173849252 4.639580667 0.965278754 1.221206774 0.254262317 0.097189715 0.053670767 2.029257451 0.007730308 0.009487411 6.70E-08 7.173849252 0.25592802 RDDDEPGPWTK ddPTM_HeLa_CUDC101_4h_R1 2 RDDDEPGPWTK 11 1 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2;A0A087WWG9 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 0 0 ; ; 123.95 0.0035427 19448900 6009.2 5841.8 6408.6 5784.6 5977.1 5551.6 5798.3 6178.6 6409.1 6337.4 FALSE FALSE TRUE 5304.810685 6021.778934 6755.068301 6020.520991 5536.181241 5445.71248 6021.942373 6881.946849 6144.914185 6299.704863 0.842072891 0.955882706 1.072283297 0.955683024 0.878800096 0.864439303 0.95590865 1.092423693 0.9754289 1 12.62106853 -7.023665763 24.56252305 0.924031442 0.964233807 0.016595042 0.077870244 1775.155571 1842417.323 0.015024775 0.01846619 9.47E-08 7.023665763 0.040202365 RDDFFYEDR ddPTM_HeLa_CUDC101_4h_R1 1 RDDFFYEDR 9 1 G3V1T9;J3KPD3;Q9Y580 G3V1T9 RBM7 RNA-binding protein 7 0 0 159.83 4.19E-06 0 852.89 808.17 794.83 654.59 817.23 713.41 896.82 806.31 772.65 770.09 FALSE FALSE TRUE 752.9155271 833.0687598 837.800914 681.2870096 756.9445711 699.8028929 931.4106478 898.0970712 740.80104 765.5094704 0.983548285 1.088254022 1.094435727 0.889978551 0.988811504 0.914166212 1.216719954 1.173201777 0.967722894 1 9.580276416 -4.750981321 24.9999956 0.994505124 1.19496097 0.636498634 0.061645786 96.70037815 231157.4907 0.00829446 0.030364777 1.77E-05 4.750981321 0.200455846 RDDGSWEVIEGYR ddPTM_HeLa_CUDC101_4h_R1 4 RDDGSWEVIEGYR 13 1 P49448;P00367 P49448 GLUD2;GLUD1 "Glutamate dehydrogenase 2, mitochondrial;Glutamate dehydrogenase 1, mitochondrial" 0 0 ;;; ;;; 224.43 9.07E-33 43654900 11126 9731.1 9168.2 9087.9 10502.5 10315.9 9534.6 9254.1 9424.7 10292.9 FALSE FALSE TRUE 9821.827146 10030.90366 9663.860624 9458.543843 9727.751499 10119.14139 9902.352716 10307.54934 9036.209877 10231.67737 0.959943007 0.980377243 0.944504041 0.924437265 0.950748459 0.989001219 0.967813229 1.007415398 0.883160165 1 13.32075506 -9.231021134 0.843938973 1.001240291 0.964043239 0 0.042699142 0.763139002 0.925521008 0.018509786 0.004498876 5.87E-10 9.231021134 -0.037197053 TGS(ph)NIS(ph)GASSDISLDEQYKHQLEETKK ddPTM_HeLa_CUDC101_4h_R1 1 TGSNISGASSDISLDEQYKHQLEETKK 27 2 P22059 P22059 OSBP Oxysterol-binding protein 1 2 0 T(0.374)GS(0.416)NIS(0.508)GAS(0.372)S(0.228)DIS(0.09)LDEQY(0.012)KHQLEET(0.001)KK 41.933 0.032539 13159000 1513 1421.6 1483.5 1403.2 1838 2057.1 1987.6 1752 1244.3 1239.4 TRUE FALSE FALSE 1335.648434 1465.397811 1563.702497 1460.428561 1702.414402 2017.864245 2064.262398 1951.440598 1193.009427 1232.027994 1.084105589 1.189419249 1.269210201 1.185385859 1.381798474 1.637839607 1.67549959 1.583925534 0.968329805 1 10.26681932 -5.640169329 0.533440145 1.023326814 1.769007855 0.916742728 0.071574361 0.25254629 0.108396361 0.016735594 0.091671015 2.29E-06 5.640169329 0.745681041 MPKIKMPKFS(ph)MPSLK ddPTM_HeLa_CUDC101_4h_R1 1 MPKIKMPKFSMPSLK 15 3 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPKIKMPKFS(0.995)MPS(0.005)LK 47.915 0.0033645 0 625.11 504.25 644.6 537.32 783.77 719.63 743.74 694.88 764.15 703.09 TRUE FALSE FALSE 551.8355534 519.7853448 679.4490258 559.2342321 725.9528486 705.9042567 772.4263009 773.9823304 732.6514136 698.9079894 0.789568243 0.743710693 0.972158047 0.800154299 1.038695879 1.010010284 1.105190258 1.10741663 1.04828021 1 9.448958728 -5.6401669 6.135049314 0.885103116 1.068656174 0.444534242 0.09497852 0.156633824 7.836849525 0.014733703 0.029679541 2.29E-06 5.6401669 0.183553058 HSST(ph)GDSADAGPPAAGSAR ddPTM_HeLa_CUDC101_4h_R1 1 HSSTGDSADAGPPAAGSAR 19 0 F5H1N7;Q6ZU35 F5H1N7 KIAA1211 Uncharacterized protein KIAA1211 1 0 HS(0.213)S(0.313)T(0.381)GDS(0.093)ADAGPPAAGSAR 69.255 0.020236 603170 298.83 122.4 108.17 197.61 191.1 58.02 0 63.996 315.51 233.74 TRUE FALSE FALSE 263.8016004 126.1709989 114.0179974 205.6693899 177.0029337 56.91336517 0 71.28104596 302.5045443 232.3497041 1.135364478 0.543021991 0.490717205 0.885171732 0.761795391 0.244947009 0 0.306783459 1.30193643 1 7.860153997 -5.638839376 0.484724019 1.06834253 5.02E-14 0.678780315 0.225938805 0.696021795 0.239571036 0.060681556 0.343485965 2.30E-06 5.638839376 -1.06834253 AISS(ph)PTVSR ddPTM_HeLa_CUDC101_4h_R1 3 AISSPTVSR 9 0 O94811 O94811 TPPP Tubulin polymerization-promoting protein 1 0 AIS(0.102)S(0.892)PT(0.006)VSR;AIS(0.305)S(0.627)PT(0.068)VSR;AIS(0.284)S(0.604)PT(0.112)VSR ;; 99.788 0.017941 120381000 8034.5 6521.6 7262.9 7304.4 7235.9 6090.7 6634.5 6058.9 6917.9 7577.9 TRUE FALSE FALSE 7092.70809 6722.522766 7655.554343 7602.305004 6702.122073 5974.530045 6890.394887 6748.620685 6632.741234 7532.826314 0.941573295 0.892430342 1.016292428 1.009223456 0.889722103 0.79313259 0.914715752 0.895894901 0.880511638 1 12.87897555 -5.637884356 6.000589154 0.970905012 0.867841203 0.357908932 0.053108354 0.130446282 6.383238618 0.00691631 0.013943718 2.30E-06 5.637884356 -0.103063808 RDDPGEFR ddPTM_HeLa_CUDC101_4h_R1 2 RDDPGEFR 8 1 A0A087X2H1;Q9ULT8;H0YJD4 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 0 0 ; ; 91.087 0.029168 6773200 1899.67 1401.59 1842.65 1857.97 1803.39 1844.19 1396.42 1266.13 1433.05 1499.64 FALSE FALSE TRUE 1676.993562 1444.771327 1942.269233 1933.746047 1670.357513 1809.015148 1450.280387 1410.261121 1373.979072 1490.720075 1.124955376 0.96917681 1.30290674 1.297189245 1.120503803 1.213517668 0.97287238 0.946026786 0.92168818 1 10.54179366 -3.062378088 13.78281347 1.08737403 1.117775107 0 0.138219104 0 0 0.01781359 0 0.000866207 3.062378088 0.030401077 DLELALS(ph)PIHNSSALPTTGR ddPTM_HeLa_CUDC101_4h_R1 2 DLELALSPIHNSSALPTTGR 20 0 A0A087WUU7;Q96GX5-2;Q96GX5-3;Q96GX5 A0A087WUU7 MASTL Serine/threonine-protein kinase greatwall 1 0 DLELALS(1)PIHNSSALPTTGR;DLELALS(1)PIHNSSALPTTGR ; 90.778 0.0011722 11540900 3449.2 2435.5 2206.4 2119.9 3261.8 2797.8 2011.76 1602.11 3326.1 3555.9 TRUE FALSE FALSE 3044.890005 2510.534868 2325.684658 2206.358685 3021.183512 2744.436626 2089.354257 1784.487726 3188.99675 3534.749349 0.861416102 0.7102441 0.65794896 0.624190987 0.854709405 0.776416191 0.591089792 0.504841376 0.902184691 1 11.7873922 -5.637592012 0.084248276 1.399282951 1.16E-15 0.598468482 0.094189135 18.08189976 0.434576551 2.513371178 4.812194445 2.30E-06 5.637592012 -1.399282951 RDEFEFLEK ddPTM_HeLa_CUDC101_4h_R1 2 RDEFEFLEK 9 1 A0A3B3IUA7;Q14258 A0A3B3IUA7 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 0 0 ; ; 140.49 0.0018811 16366800 18689.1 16251.8 16561.6 14685.1 17931.3 17415.2 15987.1 16221.2 17163.1 18952.7 FALSE FALSE TRUE 16498.39203 16752.49869 17456.97019 15284.02185 16608.54372 17083.03408 16603.7278 18067.75584 16455.62975 18839.9685 0.875712294 0.889199931 0.926592324 0.81125517 0.881558997 0.906744302 0.881303374 0.959011998 0.87344253 1 14.20150893 -9.258632804 0.820281259 1.005581642 0.888704507 0 0.052983489 0.398843952 0.44572697 0.030303094 0.006901178 5.51E-10 9.258632804 -0.116877135 RDEFLGR ddPTM_HeLa_CUDC101_4h_R1 2 RDEFLGR 7 1 A0A2R8Y602;A0A2U3TZY2;H0YGM0;Q9H078-5;Q9H078-3;Q9H078-4;Q9H078-2;Q9H078 A0A2R8Y602 CLPB Caseinolytic peptidase B protein homolog 0 0 ; ; 139.68 0.010666 25837000 4549.5 4195.6 4182.6 3846.8 4518.8 3796.4 4092.9 3953.5 3992.1 3828.2 FALSE FALSE TRUE 4016.214507 4324.861463 4408.724008 4003.689131 4185.457127 3723.989995 4250.764524 4403.550459 3827.543948 3805.429696 1.055390541 1.136497533 1.158535135 1.052099093 1.099864525 0.978599079 1.117026161 1.157175618 1.005811237 1 11.89384365 -7.979736406 1.247449084 1.013311621 1.095030731 0.338513604 0.051758897 0.352366932 1.143562064 0.013080693 0.011078327 1.05E-08 7.979736406 0.08171911 RDHRPPCAQEAPR ddPTM_HeLa_CUDC101_4h_R1 1 RDHRPPCAQEAPR 13 2 Q13501;E7EMC7;Q13501-2;C9JRJ8;E9PFW8;E3W990 Q13501 SQSTM1 Sequestosome-1 0 0 89.189 0.0091171 3858100 86.669 143.09 144.51 143.77 0 57.61 75.128 0 0 0 FALSE FALSE TRUE 76.5097912 147.4984333 152.3226477 149.633562 0 56.51118523 78.02571213 0 0 0 0 SNEDS(ph)LILEK ddPTM_HeLa_CUDC101_4h_R1 4 SNEDSLILEK 10 0 A0A0U1RRH6;O94880 A0A0U1RRH6 PHF14 PHD finger protein 14 1 0 S(0.059)NEDS(0.941)LILEK;S(0.002)NEDS(0.998)LILEK;S(0.003)NEDS(0.997)LILEK;S(0.005)NEDS(0.995)LILEK ;;; 117.48 0.005569 42026800 10332.2 8818.2 8946.5 8934.5 12117.7 11212.6 11417.9 10664.1 10924.6 11103.7 TRUE FALSE FALSE 9121.075179 9089.87829 9430.174852 9298.887528 11223.80141 10998.73834 11858.29223 11878.05804 10474.28336 11037.6547 0.826359895 0.82353349 0.854364003 0.842469508 1.016864698 0.996474218 1.074348904 1.076139666 0.948959145 1 13.43014604 -5.636889198 5.445000075 0.898353495 1.044483544 0.641513592 0.057532234 0.155051302 6.820480938 0.011696209 0.02367385 2.31E-06 5.636889198 0.146130049 RDNYVPEVSALDQEIIEVDPDTK ddPTM_HeLa_CUDC101_4h_R1 2 RDNYVPEVSALDQEIIEVDPDTK 23 1 H0YN88;A0A075B716;H3BNC9;P08708 H0YN88 RPS17 40S ribosomal protein S17 0 0 ; ; 159.59 9.27E-08 27579000 8790.8 8595.1 8117.8 7848.2 8276.3 8756 7815.4 8060.8 8846.5 9533.2 FALSE FALSE TRUE 7760.35575 8859.904843 8556.672823 8168.283519 7665.773838 8588.993888 8116.842596 8978.408889 8481.843526 9476.496102 0.818905602 0.934934679 0.902936352 0.861951868 0.808924919 0.906347008 0.856523604 0.947439728 0.895040048 1 13.21013801 -9.49295754 1.195589877 1.001081021 0.872975351 0.083794548 0.05355493 0.302220532 0.762479936 0.032284924 0.007585693 3.21E-10 9.49295754 -0.12810567 MQTLQT(ph)PS(ph)PLRMK ddPTM_HeLa_CUDC101_4h_R1 1 MQTLQTPSPLRMK 13 1 H0YL54 H0YL54 LHX9 2 0 MQT(0.068)LQT(0.997)PS(0.935)PLRMK 76.357 0.0029849 0 686.2 889.05 448.64 711.44 567.74 619.97 396.69 561.99 938.06 722.26 TRUE FALSE FALSE 605.7646762 916.4405767 472.8948355 740.4555983 525.8589513 608.1451052 411.9904662 625.96467 899.3927698 717.9639654 0.843725738 1.276443695 0.658660961 1.031326966 0.732430841 0.847041265 0.573831677 0.871860846 1.252699039 1 9.487767627 -5.635434577 1.571175067 0.940033032 0.734184968 0.229267935 0.194740806 0.433518204 2.135921287 0.024163181 0.063681893 2.32E-06 5.635434577 -0.205848064 S(ph)PNREWEVLQPAPHQVITNLPEGVR ddPTM_HeLa_CUDC101_4h_R1 1 SPNREWEVLQPAPHQVITNLPEGVR 25 1 A0A088AWL3;O75376;O75376-2 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 S(1)PNREWEVLQPAPHQVITNLPEGVR 79.911 0.00010135 0 863.56 458.3 533.84 490.42 583.58 409.73 439.62 339.13 356.15 476.75 TRUE FALSE FALSE 762.3348059 472.4196798 562.7010052 510.4214474 540.5304661 401.9150829 456.5762907 377.7351884 341.4693463 473.9142698 1.608592217 0.996846286 1.187347672 1.077033295 1.140565922 0.848075503 0.963415368 0.79705384 0.720529784 1 8.888482292 -5.635308661 0.86598139 1.269321646 0.84230829 0 0.242646217 0.64911328 0.874455493 0.042288018 0.167865609 2.32E-06 5.635308661 -0.427013356 RNSNS(ph)PPS(ph)PSSMNQR ddPTM_HeLa_CUDC101_4h_R1 1 RNSNSPPSPSSMNQR 15 1 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 2 0 RNS(0.012)NS(0.978)PPS(0.871)PS(0.125)S(0.014)MNQR 102.64 0.0092156 6144900 889.7 653.45 815.39 755.85 760.91 585.7 687.19 708.42 767.39 739.76 TRUE FALSE FALSE 785.4107147 673.58202 859.4724498 786.6768301 704.7791852 574.5287483 713.6951485 789.0636693 735.7578594 735.3598746 1.068063056 0.915989631 1.168778009 1.069784819 0.958413981 0.781289227 0.970538607 1.07303063 1.000541211 1 9.522306647 -5.635234949 6.013540474 1.03674879 0.932910373 0.197577506 0.089939055 0.240433348 11.83410049 0.012853701 0.025915614 2.32E-06 5.635234949 -0.103838417 RDQALTEEHAR ddPTM_HeLa_CUDC101_4h_R1 4 RDQALTEEHAR 11 1 P12814-4;P12814-3;P12814;P12814-2;H9KV75;H0YJ11 P12814-4 ACTN1 Alpha-actinin-1 0 0 ;;; ;;; 144.7 0.00076477 65043000 10517.9 6462.5 8581.6 9572.1 6878.13 7288.26 7743.7 6595.6 7862.1 12391.7 FALSE FALSE TRUE 9285.007706 6661.601965 9045.547254 9962.491612 6370.744053 7149.248584 8042.377103 7346.416444 7538.02091 12317.99362 0.75377598 0.540802518 0.734336089 0.808775513 0.517190076 0.580390671 0.652896677 0.596397163 0.611952007 1 13.58847967 -8.637870121 0.354091094 1.081980922 0.595675649 0 0.14801259 0.752475832 0.178659278 0.146408451 0.044017653 2.30E-09 8.637870121 -0.486305273 RDQLGDN ddPTM_HeLa_CUDC101_4h_R1 1 RDQLGDN 7 1 P59052-2 P59052-2 0 0 39.542 0.039053 9022700 837.86 738.63 539.35 665.78 710.7 743.41 667.77 468.97 815.74 721.29 FALSE FALSE TRUE 739.6473209 761.3863148 568.5088924 692.9333861 658.2730769 729.2306929 693.5261126 522.3556492 782.1148519 716.999735 1.031586603 1.061905992 0.792899725 0.966434647 0.918093892 1.017058525 0.967261323 0.728529766 1.090816096 1 9.485828775 -6.791177105 24.99999386 1.018856925 0.910894521 0.401205034 0.085037203 188.625814 158573.8037 0.012658111 0.016637295 1.62E-07 6.791177105 -0.107962404 LDSQEPGRQT(ph)PDR ddPTM_HeLa_CUDC101_4h_R1 1 LDSQEPGRQTPDR 13 1 Q8TB03-2;Q8TB03 Q8TB03-2 CXorf38 Uncharacterized protein CXorf38 1 0 LDSQEPGRQT(1)PDR 93.649 0.016255 183130000 3497 3390 3487.5 3080 3219.9 2976 3064.7 2374 3435.3 2992.7 TRUE FALSE FALSE 3087.086961 3494.441882 3676.044799 3205.615713 2982.374392 2919.237758 3182.906506 2644.246564 3293.69548 2974.899287 1.037711419 1.174642078 1.235687142 1.077554365 1.002512725 0.981289609 1.06992076 0.888852465 1.107162012 1 11.53862511 -5.634815768 5.839919697 1.053090423 0.989562057 0.20208279 0.084491045 0.423300023 20.19061421 0.013885517 0.028026212 2.32E-06 5.634815768 -0.063528366 ES(ph)PRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR ddPTM_HeLa_CUDC101_4h_R1 1 ESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 40 1 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 0 ES(0.855)PRPLQLPGAEGPAIS(0.145)DGEEGGGEPGAGGGAAGAAGAGR 42.269 0.015679 24982000 377.71 397.87 323.04 374.58 317.89 189.71 320.19 221.56 310.06 411.73 TRUE FALSE FALSE 333.4354064 410.1279031 340.5045195 389.8569915 294.439888 186.0915978 332.5398356 246.7814948 297.2791956 409.2810116 0.814685746 1.002069218 0.831957774 0.952541116 0.719407643 0.454679285 0.81249759 0.60296346 0.726344949 1 8.676947925 -5.634806221 4.598360426 0.913423506 0.634336845 0.51143636 0.115868908 0.109013256 3.915430307 0.01526865 0.031236234 2.32E-06 5.634806221 -0.279086661 DSISAVSSEKVS(ph)PS(ph)KSPSLS(ph)PSPPSPLEK ddPTM_HeLa_CUDC101_4h_R1 1 DSISAVSSEKVSPSKSPSLSPSPPSPLEK 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 3 0 DS(0.016)IS(0.027)AVS(0.121)S(0.121)EKVS(0.507)PS(0.506)KS(0.505)PS(0.324)LS(0.834)PS(0.031)PPS(0.007)PLEK 49.37 0.021392 45730000 3117.8 2591.7 2826.8 2671.7 2638.7 2413.8 2109.6 2105 2637.9 2865.4 TRUE FALSE FALSE 2752.33621 2671.547205 2979.625359 2780.663474 2444.048358 2367.760787 2190.967979 2344.624691 2529.164645 2848.356473 0.966289239 0.937925864 1.046085835 0.976234365 0.858055647 0.831272633 0.769204276 0.823150021 0.887938244 1 11.475914 -5.634551814 2.583976791 0.985136504 0.805385571 0.744042786 0.042840133 0.067244019 0.906695389 0.004575192 0.010175801 2.32E-06 5.634551814 -0.179750933 LQELESCS(ph)GLGSTSDDTDVR ddPTM_HeLa_CUDC101_4h_R1 1 LQELESCSGLGSTSDDTDVR 20 0 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7;B4DGD8 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 LQELES(0.003)CS(0.943)GLGS(0.017)T(0.017)S(0.017)DDT(0.002)DVR 76.573 0.0022516 0 308.14 487.48 263.44 306.48 462.69 499.07 407.65 460.94 356.91 369.11 TRUE FALSE FALSE 272.0202963 502.498681 277.6823633 318.9795791 428.5582805 489.5510713 423.3731971 513.4115464 342.1980187 366.9145173 0.7413724 1.369525209 0.75680397 0.86935666 1.16800579 1.334237399 1.153874205 1.399267465 0.932636902 1 8.519300177 -5.63376498 3.924103568 0.90548465 1.278246775 0.441102013 0.176065346 0.15136404 4.344532115 0.026743298 0.055555664 2.32E-06 5.63376498 0.372762126 ETYYLSDS(ph)PLLGPPVGEPR ddPTM_HeLa_CUDC101_4h_R1 3 ETYYLSDSPLLGPPVGEPR 19 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 ETYYLS(0.001)DS(0.998)PLLGPPVGEPR;ETYYLS(0.016)DS(0.984)PLLGPPVGEPR;ETYYLS(0.031)DS(0.969)PLLGPPVGEPR ;; 189.56 1.02E-11 44621000 4570.85 4233.89 3661.77 3835.68 4366.11 3799.76 3300.46 1370.79 5012.68 4450.9 TRUE FALSE FALSE 4035.061892 4364.331133 3859.736362 3992.11561 4044.030764 3727.285909 3427.759848 1526.835193 4806.055209 4424.425849 0.911996727 0.986417511 0.872369997 0.902290093 0.914023853 0.842433806 0.774735517 0.345092277 1.086255115 1 12.11127454 -4.143085954 1.291724437 0.945989965 1.36E-24 0.895914385 0.061798791 0.325942455 0.380691631 0.00739657 0.435399631 7.19E-05 4.143085954 -0.945989965 down ARHDS(ph)PDLAPNVTYSLPR ddPTM_HeLa_CUDC101_4h_R1 2 ARHDSPDLAPNVTYSLPR 18 1 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 ARHDS(1)PDLAPNVTYSLPR;ARHDS(1)PDLAPNVTYSLPR ; 98.76 0.0014369 100510000 3117.09 3160.5 2686.43 2601.43 3579.5 3732.2 2981.4 3188.74 3647.6 3073.26 TRUE FALSE FALSE 2751.709435 3257.871259 2831.666532 2707.52756 3315.447416 3661.014503 3096.393597 3551.733272 3497.244384 3054.980113 0.900729083 1.066413246 0.926901789 0.886266836 1.085259902 1.198375887 1.013556057 1.162604384 1.144768298 1 11.57694727 -5.633479141 6.176755152 0.955335659 1.117973835 0.300607036 0.08847975 0.115589217 5.877093289 0.009648043 0.019436975 2.33E-06 5.633479141 0.162638176 S(ph)RTGSESSQTGTSTTSSR ddPTM_HeLa_CUDC101_4h_R1 2 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 S(0.612)RT(0.387)GS(0.001)ESSQTGTSTTSSR;S(0.877)RT(0.123)GSESSQTGTSTTSSR ; 200.2 3.71E-17 54238300 306.55 345.73 513.28 441.561 659.23 680.53 771.26 616.17 539.07 529.19 TRUE FALSE FALSE 270.6166737 356.3815315 541.0294694 459.5697662 610.5999163 667.5500241 801.0077566 686.3123022 516.8493064 526.0423543 0.514438945 0.677476877 1.02849032 0.873636433 1.160742878 1.269004327 1.522705824 1.304671186 0.98252413 1 9.039035153 -5.632977232 1.135408264 0.767456928 1.423072469 0.681819855 0.160537264 0.245905136 0.60905139 0.032896115 0.105884858 2.33E-06 5.632977232 0.655615541 S(ph)VEDVRPHHTDANNQSACFEAPDQK ddPTM_HeLa_CUDC101_4h_R1 1 SVEDVRPHHTDANNQSACFEAPDQK 25 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.62)VEDVRPHHT(0.135)DANNQS(0.246)ACFEAPDQK 47.175 0.022956 43102000 5816.3 2811 2522.8 2165.4 6562 5984.9 5832.4 6156 5372 3965.8 TRUE FALSE FALSE 5134.522131 2897.603578 2659.190199 2253.714372 6077.934333 5870.748004 6057.357622 6856.774157 5150.563886 3942.211245 1.302447234 0.735019865 0.674542797 0.571687876 1.541757647 1.48920178 1.536538061 1.73932185 1.306516461 1 11.94478937 -5.631465892 11.33974761 1.037518033 1.571830897 0.600388843 0.249072011 0.26809314 26.2592187 0.041144414 0.082307839 2.34E-06 5.631465892 0.534312864 SVS(ph)HPGSCSSER ddPTM_HeLa_CUDC101_4h_R1 1 SVSHPGSCSSER 12 0 H7C0Q0;Q9HB20 H7C0Q0 PLEKHA3 Pleckstrin homology domain-containing family A member 3 1 0 S(0.005)VS(0.995)HPGSCSSER 71.879 0.033454 1823400 1551.2 618.32 922.56 851.51 1986.4 2033.8 2102.5 1693.3 1254 1236 TRUE FALSE FALSE 1369.370687 637.3697063 972.4363842 886.2382583 1839.867229 1995.008654 2183.594129 1886.058427 1202.309589 1228.648217 1.114534387 0.518756872 0.791468519 0.721311638 1.497472754 1.623742765 1.777232978 1.535067891 0.978562922 1 10.26285619 -5.630211065 5.444510751 0.968888548 1.643068618 0.787341928 0.187345844 0.090288076 4.015093141 0.031513967 0.063823778 2.34E-06 5.630211065 0.67418007 EVLTPTSTS(ph)DNETR ddPTM_HeLa_CUDC101_4h_R1 1 EVLTPTSTSDNETR 14 0 H7C150;H7C183;Q70CQ2-3;Q70CQ2-2;Q70CQ2 H7C150 USP34 Ubiquitin carboxyl-terminal hydrolase 34 1 0 EVLTPT(0.001)S(0.009)T(0.205)S(0.785)DNETR 178.68 9.96E-08 7442100 3088.7 2413.3 2460.5 2106.6 2429 1845.5 1897.7 1473.1 2873.4 2866.3 TRUE FALSE FALSE 2726.647268 2487.650913 2593.522073 2192.516254 2249.817509 1810.300162 1970.894925 1640.79175 2754.957236 2849.25112 0.956969798 0.873089387 0.910246926 0.769506148 0.789617136 0.63535999 0.69172384 0.575867721 0.966905731 1 11.47636706 -5.629762162 0.455589935 0.996643855 0.530695893 0.932371504 0.036521796 0.244356595 0.072872402 0.008783794 0.050826711 2.35E-06 5.629762162 -0.465947962 TSPCQDS(ph)SVNYGITK ddPTM_HeLa_CUDC101_4h_R1 1 TSPCQDSSVNYGITK 15 0 Q15699 Q15699 ALX1 ALX homeobox protein 1 1 0 T(0.001)S(0.001)PCQDS(0.471)S(0.471)VNY(0.002)GIT(0.054)K 70.272 0.038873 5109600 2258.4 2006.5 1925.9 1852 1865 1654.2 1813 1268.1 2156 1724.1 TRUE FALSE FALSE 1993.673776 2068.317887 2030.01998 1927.532565 1727.422666 1622.648891 1882.928017 1412.455378 2067.128767 1713.844977 1.163275444 1.206829039 1.184482848 1.124683149 1.007922355 0.946788603 1.098657138 0.824144189 1.206135208 1 10.7430209 -5.629704301 4.463910064 1.101488049 0.971617447 0.439857639 0.09069775 0.223766613 7.769936027 0.014477345 0.029718241 2.35E-06 5.629704301 -0.129870602 RGS(ph)IGENQGEEK ddPTM_HeLa_CUDC101_4h_R1 4 RGSIGENQGEEK 12 1 E7EX44;Q05682-3;Q05682-6;Q05682-2 E7EX44 CALD1 Caldesmon 1 0 RGS(1)IGENQGEEK;RGS(1)IGENQGEEK;RGS(1)IGENQGEEK;RGS(1)IGENQGEEK ;;; 158.65 7.83E-05 505940000 19510.6 17315.1 20039.8 18288.1 19208.9 17831.1 17547.2 15840.8 19619.6 19020.8 TRUE FALSE FALSE 17223.59704 17848.55771 21123.21221 19033.96777 17791.89772 17491.00148 18224.00138 17644.05264 18810.87178 18907.66344 0.910932073 0.943985372 1.11717729 1.00668006 0.940988704 0.925074721 0.963842066 0.933169384 0.994880824 1 14.20668347 -5.628832666 22.77389557 0.97218379 0.941279283 0.119604376 0.053746194 13.76790954 2906.05653 0.00909704 0.01819408 2.35E-06 5.628832666 -0.030904507 S(ph)PSPGLFR ddPTM_HeLa_CUDC101_4h_R1 4 SPSPGLFR 8 0 E7ESG2;Q9HAW4-2;Q9HAW4-3;Q9HAW4 E7ESG2 CLSPN Claspin 1 0 S(0.502)PS(0.498)PGLFR;S(0.982)PS(0.018)PGLFR;S(0.986)PS(0.014)PGLFR;S(0.844)PS(0.156)PGLFR ;;; 120.31 0.0074035 195555000 17242.9 14447.4 13814.7 13503.7 15260.1 12029.3 12709.7 10683.7 16684.6 15152.2 TRUE FALSE FALSE 15221.7134 14892.50727 14561.56447 14054.43925 14134.39283 11799.86114 13199.91739 11899.88922 15996.85373 15062.07404 1.010598763 0.988742137 0.966770209 0.933101193 0.938409464 0.783415426 0.876367846 0.790056482 1.062061817 1 13.87863282 -5.628015718 0.879362737 1.004738351 0.806112982 0.831849634 0.036081184 0.157654576 0.219600296 0.004837564 0.019111963 2.35E-06 5.628015718 -0.19862537 SSS(ph)MSSLTGAYASGIPSSSR ddPTM_HeLa_CUDC101_4h_R1 2 SSSMSSLTGAYASGIPSSSR 20 0 Q96HA1;Q96HA1-2;Q96HA1-3 Q96HA1 POM121 Nuclear envelope pore membrane protein POM 121 1 0 S(0.005)S(0.005)S(0.95)MS(0.02)S(0.02)LT(0.001)GAYASGIPSSSR;S(0.004)S(0.004)S(0.981)MS(0.004)S(0.004)LT(0.001)GAYASGIPSSSR ; 146.81 2.10E-05 14494200 2006.77 2135.5 1611.09 1917.95 2118.1 2213.4 1960.21 1899.27 1661.46 1972.35 TRUE FALSE FALSE 1771.539463 2201.292224 1698.190399 1996.172291 1961.851983 2171.183083 2035.815956 2115.47522 1592.973916 1960.618374 0.903561593 1.122754052 0.866150405 1.018134032 1.000629194 1.10739709 1.038354013 1.078983675 0.812485457 1 10.93709303 -5.627791591 1.981717213 0.962730722 1.070458521 0.298310069 0.082395935 0.296253936 2.342983869 0.010180137 0.024485792 2.36E-06 5.627791591 0.107727799 TYSAPAINAIQGGSFES(ph)PKK ddPTM_HeLa_CUDC101_4h_R1 2 TYSAPAINAIQGGSFESPKK 20 1 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 TYSAPAINAIQGGS(0.005)FES(0.995)PKK;TYSAPAINAIQGGS(0.01)FES(0.99)PKK ; 137.86 1.14E-05 71265000 3797.3 3094.8 2975.5 2960.4 3063.1 2605 2739.5 2343.9 2881.2 2822.5 TRUE FALSE FALSE 3352.18625 3190.14712 3136.36453 3081.137908 2837.141216 2555.313965 2845.163433 2610.720102 2762.435717 2805.711644 1.194772192 1.137018883 1.117849918 1.098166276 1.011201996 0.910754307 1.014061241 0.930501931 0.984575775 1 11.45415103 -5.626282414 3.393671829 1.100567785 0.957832857 0.479790504 0.063568419 0.180747853 4.091174311 0.011398842 0.024200598 2.36E-06 5.626282414 -0.142734928 IQEQES(ph)SGEEDSDLSPEER ddPTM_HeLa_CUDC101_4h_R1 1 IQEQESSGEEDSDLSPEER 19 0 P41236;Q6NXS1;E7EMN6 P41236 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3 1 0 IQEQES(0.5)S(0.5)GEEDSDLSPEER 261.66 9.19E-71 27020000 2325.1 1873.2 1943.6 1825.6 1905.6 1293.5 1476.7 1612.1 2222.4 1959 TRUE FALSE FALSE 2052.555303 1930.911072 2048.676895 1900.055859 1765.027684 1268.828643 1533.656814 1795.614948 2130.791731 1947.347781 1.054026057 0.991559438 1.052034421 0.975714702 0.906375174 0.65156756 0.787561846 0.922082314 1.094201946 1 10.92729485 -5.625482199 2.919191925 1.023335978 0.786089479 0.705435295 0.069636664 0.09851265 1.685870374 0.009493229 0.020684178 2.37E-06 5.625482199 -0.237246499 QLSES(ph)ESSLEMDDER ddPTM_HeLa_CUDC101_4h_R1 1 QLSESESSLEMDDER 15 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 QLSES(0.421)ES(0.29)S(0.29)LEMDDER 199.33 1.55E-32 0 524.75 576.3 423.06 459.75 742.46 835.33 564.72 712.65 741.03 669.81 TRUE FALSE FALSE 463.2396005 594.0551199 445.9319033 478.5005922 687.690205 819.397472 586.5014396 793.7751954 710.4844298 665.8259403 0.695736787 0.892207834 0.66974246 0.718657179 1.032837808 1.230648165 0.880863006 1.192166221 1.067072318 1 9.379001268 -5.62495036 6.286864519 0.832199493 1.087335415 0.397303531 0.148088411 0.168656206 8.997630694 0.022099487 0.044515048 2.37E-06 5.62495036 0.255135922 T(ph)SPTPPESATTVK ddPTM_HeLa_CUDC101_4h_R1 3 TSPTPPESATTVK 13 0 Q5M775-4;Q5M775;J3KSG2 Q5M775-4 SPECC1 Cytospin-B 1 0 T(0.722)S(0.278)PTPPESATTVK;T(0.929)S(0.069)PT(0.002)PPESATTVK;T(0.939)S(0.061)PTPPESATTVK ;; 186.51 2.27E-10 596114000 19386.3 17899.3 17202.2 16651.5 17055.8 15174 14608.1 14062.6 16988.2 16572.7 TRUE FALSE FALSE 17113.8673 18450.75622 18132.20297 17330.62014 15797.62761 14884.58123 15171.53931 15663.42954 16287.93921 16474.12484 1.038833168 1.119983999 1.100647418 1.051990337 0.958935771 0.903512713 0.920931428 0.95078978 0.988698299 1 14.00791421 -5.624212498 4.229750029 1.036089386 0.925432843 0.663753257 0.040348366 0.125747983 4.078327511 0.006814037 0.014076637 2.38E-06 5.624212498 -0.110656543 AVS(ph)PLDPSKEVSGK ddPTM_HeLa_CUDC101_4h_R1 1 AVSPLDPSKEVSGK 14 1 Q14865-2;Q14865 Q14865-2 ARID5B AT-rich interactive domain-containing protein 5B 1 0 AVS(0.998)PLDPS(0.002)KEVSGK 66.738 0.030528 36651000 7704.3 6415.7 7880.3 7420.2 6532.2 6009.6 5923.6 5014.5 6585 6842 TRUE FALSE FALSE 6801.213633 6613.360113 8306.332855 7722.827829 6050.33262 5894.976893 6152.075236 5585.330411 6313.563513 6801.30348 0.99998679 0.972366567 1.221285431 1.135492314 0.889584274 0.866742222 0.904543556 0.821214702 0.928287281 1 12.73159555 -5.622975189 8.487629778 1.024515449 0.869905676 0.506668859 0.082352201 0.182830936 13.88795439 0.012143176 0.024325016 2.38E-06 5.622975189 -0.154609773 GNDPLTSS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 4 GNDPLTSSPGR 11 0 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 GNDPLTS(0.005)S(0.995)PGR;GNDPLT(0.001)S(0.117)S(0.882)PGR;GNDPLTS(0.002)S(0.998)PGR;GNDPLTS(0.004)S(0.996)PGR ;;; 190.35 3.65E-11 6561651000 32185.9 28210 28566.9 27693.5 31160.7 28972.1 26864.2 26206.9 29208.3 29968.8 TRUE FALSE FALSE 28413.11759 29079.11666 30111.31302 28822.96063 28862.03724 28419.50546 27900.36119 29190.18756 28004.32151 29790.54424 0.953762958 0.976119014 1.01076747 0.967520445 0.968832157 0.953977384 0.936550906 0.979847408 0.940040614 1 14.86256686 -5.622236619 2.262978679 0.979704443 0.955289902 0.097492742 0.021715132 0.386047605 3.988789943 0.003274537 0.007580982 2.39E-06 5.622236619 -0.024414542 SES(ph)PCESPYPNEK ddPTM_HeLa_CUDC101_4h_R1 1 SESPCESPYPNEK 13 0 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;B7ZBA0;H0Y594;B7ZB98 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 S(0.002)ES(0.997)PCES(0.001)PYPNEK 157.33 8.09E-05 6538700 2823.2 1775.7 1797.7 2031.2 2059.2 2022.9 1631.1 1410 2107.2 2218 TRUE FALSE FALSE 2492.268776 1830.407212 1894.8891 2114.041116 1907.296919 1984.316553 1694.012073 1570.508701 2020.340324 2204.807237 1.130379442 0.830189225 0.859435268 0.958832627 0.865062889 0.899995482 0.768326611 0.712311115 0.916334222 1 11.10643681 -5.621251399 0.452273738 1.058835381 0.696279747 0.358765375 0.090156227 0.977157604 0.285538911 0.026954239 0.157617917 2.39E-06 5.621251399 -0.362555634 DGQDAIAQS(ph)PEKESKDYEMNANHK ddPTM_HeLa_CUDC101_4h_R1 2 DGQDAIAQSPEKESKDYEMNANHK 24 2 Q9NWH9;H0YL55;H7BXE3 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 DGQDAIAQS(0.931)PEKES(0.06)KDY(0.008)EMNANHK;DGQDAIAQS(0.94)PEKES(0.059)KDY(0.001)EMNANHK ; 54.869 0.0060418 136624000 3210.5 3716.5 4057.4 3495.2 5144.1 4622.9 4201.4 5200.3 4130.4 3554.1 TRUE FALSE FALSE 2834.170057 3831.00096 4276.755317 3637.749364 4764.629991 4534.725885 4363.449405 5792.281132 3960.143164 3532.960055 0.80220835 1.084360112 1.210530334 1.029660485 1.348622661 1.283548586 1.23506899 1.639498053 1.120913654 1 11.78666172 -5.61795253 0.560038168 0.908364 1.522638675 0.571777319 0.141022795 0.549346308 0.261576211 0.030761106 0.169201269 2.41E-06 5.61795253 0.614274675 EEPLS(ph)EEEPCTSTAIAS(ph)PEKK ddPTM_HeLa_CUDC101_4h_R1 2 EEPLSEEEPCTSTAIASPEKK 21 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 0 EEPLS(0.998)EEEPCT(0.003)S(0.007)T(0.006)AIAS(0.987)PEKK;EEPLS(0.997)EEEPCT(0.017)S(0.011)T(0.021)AIAS(0.954)PEKK ; 79.365 0.0009742 240827700 5853.6 4449.5 4298.8 4403.8 4463.8 4046.1 3667.1 3301.8 4977.3 4564 TRUE FALSE FALSE 5167.449881 4586.583821 4531.206131 4583.405999 4134.514367 3968.927384 3808.541275 3677.663566 4772.133587 4536.853125 1.138994307 1.010961496 0.998755306 1.010261049 0.911317659 0.874819456 0.839467616 0.810619931 1.051859837 1 12.14747624 -5.61725802 0.901363451 1.062635489 0.812679539 0.852049781 0.037480322 0.241017561 0.354356543 0.009503394 0.037215195 2.41E-06 5.61725802 -0.24995595 VAS(ph)PTSGVK ddPTM_HeLa_CUDC101_4h_R1 3 VASPTSGVK 9 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 VAS(0.973)PT(0.021)S(0.006)GVK;VAS(0.658)PT(0.304)S(0.038)GVK;VAS(0.808)PT(0.147)S(0.045)GVK ;; 102.95 0.014973 329019000 21195.1 17409.2 17215.7 18735.5 17822.3 14828.8 14863.5 14227.6 16990.1 19717.4 TRUE FALSE FALSE 18710.64251 17945.55682 18146.43282 19499.61467 16507.58444 14545.96535 15436.79017 15847.21247 16289.76089 19600.12003 0.954618772 0.915584027 0.925832739 0.994872207 0.842218538 0.742136544 0.787586512 0.808526297 0.83110516 1 14.25857487 -5.616606839 3.950064569 0.96936185 0.781217617 0.610828019 0.053301728 0.05799467 1.712721401 0.005203153 0.010855975 2.42E-06 5.616606839 -0.188144233 FS(ph)SKNQLK ddPTM_HeLa_CUDC101_4h_R1 1 FSSKNQLK 8 1 H7C5R8;Q460N5-5;Q460N5-3;Q460N5-4;Q460N5-1;Q460N5 H7C5R8 PARP14 Poly [ADP-ribose] polymerase 14 1 0 FS(0.5)S(0.5)KNQLK 82.75 0.0026487 0 2268.4 2246.9 2251.4 2072.4 2239.2 1997.3 1882.1 1762.6 2017.7 2404.4 TRUE FALSE FALSE 2002.501591 2316.124326 2373.117494 2156.92143 2074.018677 1959.20483 1954.693227 1963.247259 1934.529552 2390.098522 0.837832237 0.969049729 0.99289526 0.902440385 0.86775447 0.819717184 0.817829562 0.821408507 0.809393226 1 11.22285437 -5.616597029 2.203664214 0.930599998 0.819649318 0.364047302 0.058208195 0.257323088 2.518439465 0.009736066 0.022788559 2.42E-06 5.616597029 -0.11095068 NSPQS(ph)SPTSTPK ddPTM_HeLa_CUDC101_4h_R1 3 NSPQSSPTSTPK 12 0 Q9Y6Y0 Q9Y6Y0 IVNS1ABP Influenza virus NS1A-binding protein 1 0 NSPQS(0.664)S(0.287)PT(0.029)S(0.015)T(0.005)PK;NSPQS(0.497)S(0.497)PT(0.006)STPK;NSPQS(0.486)S(0.486)PT(0.025)S(0.002)TPK ;; 211.77 1.59E-23 83947000 19919.7 15783.61 18012.29 16210.19 16805.65 13082.92 13853.93 13531.94 16840.12 17063.92 TRUE FALSE FALSE 17584.74296 16269.88432 18986.08888 16871.31161 15565.93068 12833.3851 14388.28072 15072.36135 16145.96313 16962.42304 1.03668815 0.959172182 1.119302875 0.994628631 0.91767141 0.756577351 0.848244421 0.888573602 0.951866551 1 14.05005465 -5.61648228 3.125921027 1.02029378 0.832790198 0.687715222 0.0539687 0.088084301 1.720678383 0.006968268 0.015057637 2.42E-06 5.61648228 -0.187503581 RDYDDMSPR ddPTM_HeLa_CUDC101_4h_R1 3 RDYDDMSPR 9 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ;; ;; 115.78 0.00091547 16572600 3212.27 2952.3 3524.28 3298.25 3284.67 3009.84 2873.54 2676.51 3087.51 3529.28 FALSE FALSE TRUE 2835.73258 3043.256864 3714.813237 3432.766891 3042.366438 2952.432317 2984.3734 2981.19308 2960.241531 3508.287686 0.808295338 0.867447922 1.058867907 0.978473603 0.867194116 0.841559354 0.850663819 0.849757302 0.843785287 1 11.77655134 -5.543985335 21.95041489 0.920713403 0.848779862 0.208366259 0.070822934 93.57922231 97319.78892 0.012975369 0.025955303 2.86E-06 5.543985335 -0.07193354 TLSDVEDQKELAS(ph)PVSPELR ddPTM_HeLa_CUDC101_4h_R1 1 TLSDVEDQKELASPVSPELR 20 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 TLSDVEDQKELAS(0.757)PVS(0.243)PELR 76.693 0.003075 25615000 1918.6 1345.2 1343.6 1397 2079.4 2102.9 2237.5 1735.2 1444.2 1346.4 TRUE FALSE FALSE 1693.704616 1386.644018 1416.23908 1453.975698 1926.006805 2062.790686 2323.801125 1932.728154 1384.669465 1338.391553 1.265477664 1.036052577 1.058164987 1.086360486 1.439045846 1.541246044 1.73626404 1.444067807 1.034577259 1 10.38628453 -5.615788693 2.976341766 1.112164201 1.584303213 0.838511654 0.099347161 0.091985968 1.636276 0.017810419 0.038843942 2.42E-06 5.615788693 0.472139012 QSLPAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 QSLPASPR 8 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 QSLPAS(1)PR;QSLPAS(1)PR ; 139.15 0.0046406 304730000 7112.8 7464.4 6359.5 6527.6 6547.9 6250.7 5288.2 5491.1 5921.6 6639.4 TRUE FALSE FALSE 6279.048366 7694.369317 6703.313806 6793.823743 6064.874462 6131.478312 5492.167645 6116.184628 5677.509142 6599.908554 0.951384147 1.165829686 1.01566768 1.029381496 0.918933105 0.929024738 0.832158143 0.926707481 0.860240577 1 12.68823032 -5.615745933 4.207680099 0.998649119 0.893949518 0.305808776 0.075409405 0.189122504 6.180428468 0.009707366 0.020109515 2.42E-06 5.615745933 -0.104699601 SIS(ph)PEVSASRR ddPTM_HeLa_CUDC101_4h_R1 3 SISPEVSASRR 11 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 S(0.014)IS(0.985)PEVSAS(0.001)RR;S(0.068)IS(0.932)PEVSASRR;S(0.026)IS(0.974)PEVSASRR ;; 105.03 0.0012919 18592000 4399.91 4741.07 4093.38 4490.4 5631.5 4783.4 4679.5 5255.35 5014 3954.35 TRUE FALSE FALSE 3884.15922 4887.136747 4314.680505 4673.537921 5216.075465 4692.164615 4859.989883 5853.597801 4807.320798 3930.82935 0.988127154 1.243283875 1.097651442 1.188944496 1.326965635 1.193683113 1.236377733 1.489150833 1.222978758 1 11.94061802 -5.615606682 0.35104396 0.96957933 1.477125244 0.353226176 0.113439371 1.061560535 0.182230125 0.03615232 0.206300852 2.42E-06 5.615606682 0.507545914 SRES(ph)LNVDVVK ddPTM_HeLa_CUDC101_4h_R1 2 SRESLNVDVVK 11 1 Q07866-6;Q07866-4;G3V5R9;Q07866-9;Q07866-7;H0YG16;G3V3H3;Q07866-10;Q07866-5;Q07866-3;G5E9S8;F8W6L3;Q07866;Q07866-8;Q07866-2;G3V2E7;E7EVH7;H0YJT3;H0YJL0;H0YJU9;H0YGB8 Q07866-6 KLC1 Kinesin light chain 1 1 0 S(0.027)RES(0.973)LNVDVVK;S(0.002)RES(0.998)LNVDVVK ; 141.06 0.00076182 33070000 9399.7 8373.2 7723.6 8411.1 9839.2 10548.4 10096.7 7945.1 8166 8461.4 TRUE FALSE FALSE 8297.881415 8631.168367 8141.161179 8754.141014 9113.381818 10347.20684 10486.1331 8849.538069 7829.394024 8411.071216 0.98654276 1.026167553 0.967910147 1.040787884 1.083498354 1.230188947 1.246706018 1.052129728 0.930843863 1 13.03807384 -5.614096089 2.349449062 0.995647434 1.182050959 0.684379845 0.056175869 0.108635095 1.209293975 0.00718912 0.016550098 2.43E-06 5.614096089 0.186403525 EIIKQEES(ph)VDPDYWEK ddPTM_HeLa_CUDC101_4h_R1 1 EIIKQEESVDPDYWEK 16 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8Y8C1;A0A2R8YFD8;A0A2R8Y445;A0A2R8YER1;A0A2R8YE38;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8YD40;A0A2R8Y4X2;A0A2R8Y5Z7 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 EIIKQEES(0.988)VDPDY(0.012)WEK 71.735 0.016621 10759000 1705.1 1283.9 1376.5 2106.3 2448.9 3352.4 3833.9 2651.1 1148.5 1211.1 TRUE FALSE FALSE 1505.230763 1323.455437 1450.917754 2192.204018 2268.249526 3288.458555 3981.774807 2952.890508 1101.158344 1203.896323 1.250299327 1.099310141 1.205184969 1.820924257 1.884090417 2.731513081 3.307406734 2.452778076 0.914662104 1 10.23349544 -5.613591109 1.145482024 1.116798275 2.963392692 0.89718753 0.251112254 0.1003625 0.252483108 0.037759881 0.122964344 2.43E-06 5.613591109 1.846594418 up S(ph)PGASNFSTLPK ddPTM_HeLa_CUDC101_4h_R1 4 SPGASNFSTLPK 12 0 Q9Y4E8 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 0 S(1)PGASNFSTLPK;S(1)PGASNFSTLPK;S(0.997)PGAS(0.003)NFSTLPK;S(1)PGASNFSTLPK ;;; 215.09 7.82E-24 234802000 8850.9 7783.8 7662.6 8106.1 8369.5 8070.3 7003.3 7354.3 8411 8059.7 TRUE FALSE FALSE 7813.410919 8023.609652 8076.863334 8436.701796 7752.098659 7916.372474 7273.419627 8191.483785 8064.29502 8011.760546 0.975242692 1.001478964 1.008125903 1.053039684 0.967589909 0.988093994 0.907842862 1.022432428 1.00655717 1 12.96790359 -5.613543576 23.0421661 0.99545069 0.968099711 0.165554412 0.033240253 15.69898383 3980.906672 0.004667286 0.009334577 2.43E-06 5.613543576 -0.027350979 REDIFYTSK ddPTM_HeLa_CUDC101_4h_R1 2 REDIFYTSK 9 1 B4DK69;P52895;S4R3P0;P52895-2;A0A0A0MSS8;P42330;S4R3Z2;P17516;S4R3D5;A6NHU4;Q04828;H0Y804 B4DK69;A0A0A0MSS8;Q04828 AKR1C2;AKR1C3;AKR1C4;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C3;Aldo-keto reductase family 1 member C4;Aldo-keto reductase family 1 member C1 0 0 ; ; 163.66 4.19E-05 306770000 19193.9 14588 12909.9 15723.2 14897.7 13253.9 13072.5 12267.5 11921.3 10302.2 FALSE FALSE TRUE 16944.02014 15037.43899 13607.84824 16364.46006 13798.72635 13001.10394 13576.7107 13663.98261 11429.89897 10240.92206 1.654540484 1.468367683 1.328771781 1.597947916 1.347410543 1.269524743 1.32573128 1.33425316 1.116100572 1 13.322058 -9.526560877 1.294506048 1.000872137 1.439500449 0.559012105 0.124746869 0.256677051 0.772600193 0.09817719 0.023708311 2.97E-10 9.526560877 0.438628313 REDPSFER ddPTM_HeLa_CUDC101_4h_R1 2 REDPSFER 8 1 Q9NWH9;Q9NWH9-3;H7C3F4;H0YMM0 Q9NWH9 SLTM SAFB-like transcription modulator 0 0 ; ; 101.46 0.0025313 4493000 1574.69 1684.8 1683.31 1779.37 1381.61 1459.46 1681.13 1414.63 1799.9 1740.28 FALSE FALSE TRUE 1390.107225 1736.706691 1774.31483 1851.9404 1279.691383 1431.623232 1745.971747 1575.665761 1725.70736 1729.928737 0.803563289 1.003918054 1.025657758 1.070529878 0.739736473 0.827561969 1.009273798 0.910826976 0.997559797 1 10.75649689 -4.71080926 24.99875245 0.916181375 0.960049993 0 0.106615798 438.6501413 216577.9632 0.016144813 0.060408201 1.95E-05 4.71080926 0.043868618 Y(ph)EST(ph)RSGRR ddPTM_HeLa_CUDC101_4h_R1 1 YESTRSGRR 9 2 A0A0G2JNZ0;A0A0G2JLB3;P04062-5;P04062;P04062-2 A0A0G2JNZ0 GBA Glucosylceramidase 2 0 Y(0.997)ES(0.004)T(0.5)RS(0.499)GRR 70.942 0.0026193 0 0 0 0 0 69.92 134.05 0 90.919 229.3 67.766 TRUE FALSE FALSE 0 0 0 0 64.7621409 131.4932196 0 101.2688515 219.8481569 67.36292482 0 0 0 0 0.961391464 1.952011733 0 1.503332163 3.263637343 1 6.073882875 -5.612791318 7.384077008 0.396937998 1.104706519 0 1.063494332 0.265203286 18.66319857 0.090188618 0.181029715 2.44E-06 5.612791318 0.707768521 S(ph)SCSSEPNTPK ddPTM_HeLa_CUDC101_4h_R1 2 SSCSSEPNTPK 11 0 I3L2J0;A0A0A0MQR4;Q96RK0;I3L373;I3L135;I3L1Q4 I3L2J0 CIC Protein capicua homolog 1 0 S(0.499)S(0.499)CS(0.003)SEPNTPK;S(0.683)S(0.268)CS(0.049)SEPNTPK ; 114.87 0.0055951 6934500 6038.4 4251.7 4833.8 4304.5 3487.8 2656 2372.31 2665.9 5190.1 3249.6 TRUE FALSE FALSE 5330.587906 4382.689837 5095.129849 4480.056116 3230.511943 2605.341225 2463.810791 2969.37528 4976.161881 3230.271235 1.65019824 1.356755987 1.57730713 1.386897815 1.000074516 0.806539462 0.76272567 0.919234041 1.540478034 1 11.65743959 -5.612693311 3.51718662 1.345773746 0.829974043 0.686747265 0.179213304 0.163348402 3.97521891 0.037938304 0.080547058 2.44E-06 5.612693311 -0.515799703 GACST(ph)PDMPQFEPVKTETMTVSSLAIR ddPTM_HeLa_CUDC101_4h_R1 1 GACSTPDMPQFEPVKTETMTVSSLAIR 27 1 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 GACS(0.187)T(0.813)PDMPQFEPVKTETMTVSSLAIR 77.505 3.41E-05 0 887.86 909.9 578.21 730.27 617.51 486.51 603.15 395.65 679.84 580.51 TRUE FALSE FALSE 783.7863967 937.9329405 609.4697816 760.0535671 571.9575176 477.2306323 626.4136975 440.6891967 651.8167075 577.0571007 1.358247556 1.625372843 1.056168932 1.317120206 0.991162775 0.827007642 1.085531565 0.763683865 1.129553222 1 9.172570273 -5.612153616 5.39794775 1.210511455 0.910925875 0.433671292 0.184330592 0.19613998 9.255821503 0.030819251 0.062566758 2.44E-06 5.612153616 -0.29958558 REDYVGGQSHR ddPTM_HeLa_CUDC101_4h_R1 2 REDYVGGQSHR 11 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 0 0 ; ; 88.338 0.018613 941060 345.14 0 482.47 398.53 185.33 369.07 326.46 329.265 302.2 491.71 FALSE FALSE TRUE 304.6832124 0 508.5537876 414.783776 171.6585751 362.0306047 339.0516716 366.7471967 289.7431881 488.7852871 0.623347757 0 1.04044414 0.848601189 0.351194235 0.740674104 0.693661779 0.750323724 0.592782139 1 8.933057049 -9.032273466 1.004800623 0.984181384 0.633311687 0 0.295072619 0.614608967 1.188106213 0.137434836 0.049961837 9.28E-10 9.032273466 -0.350869697 REEAAVDAQQQK ddPTM_HeLa_CUDC101_4h_R1 1 REEAAVDAQQQK 12 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 140.45 0.0012909 2040900 2044.9 1465.8 1798.6 1878.1 1563.7 1661.9 1465.8 1284.4 1625.5 1978 FALSE FALSE TRUE 1805.199922 1510.959561 1895.837756 1954.697036 1448.348966 1630.202026 1522.336397 1430.610904 1558.496202 1966.234768 0.918099889 0.768453282 0.964197047 0.994132068 0.736610394 0.829098362 0.774239385 0.727589059 0.792629765 1 10.94121987 -1.134122027 0.140032467 1.037303505 5.81E-15 0.123122162 0.09591287 39.84091705 0.381601568 0.199833554 8.25153323 0.073430752 1.134122027 -1.037303505 (ac)S(ph)ETAPAAPAAPAPAEKTPVK ddPTM_HeLa_CUDC101_4h_R1 1 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 1 0 S(0.5)ET(0.5)APAAPAAPAPAEKT(0.001)PVK 145.46 1.39E-24 1259100000 3610.8 3698.3 4445.1 3642.6 2649.9 2198.2 2024.9 1533.1 2798.4 3442.4 TRUE FALSE FALSE 3187.547498 3812.240239 4685.415552 3791.160973 2454.422156 2156.272997 2103.001071 1707.621907 2683.048768 3421.924452 0.931507268 1.114063239 1.369234072 1.107903177 0.717263689 0.630134601 0.614566774 0.499023848 0.78407598 1 11.74059219 -5.612127694 4.101869416 1.02088584 0.595277776 0.682414004 0.146602513 0.105652339 3.342518236 0.021840763 0.045424737 2.44E-06 5.612127694 -0.425608064 EES(ph)EESEAEPVQR ddPTM_HeLa_CUDC101_4h_R1 4 EESEESEAEPVQR 13 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EES(0.968)EES(0.032)EAEPVQR;EES(0.991)EES(0.009)EAEPVQR;EES(0.999)EES(0.001)EAEPVQR;EES(0.992)EES(0.008)EAEPVQR ;;; 184.11 6.36E-11 261468000 6276.6 6965 6019.03 6280 5973.7 4895.2 4688.3 4923.53 8745 7172 TRUE FALSE FALSE 5540.866463 7179.583394 6344.436968 6536.125544 5533.032052 4801.832216 4869.129301 5484.004754 8384.527399 7129.340625 0.777191995 1.007047323 0.889905154 0.916792434 0.776093098 0.673531041 0.682970496 0.769216263 1.176059308 1 12.79955294 -5.611895487 3.522365511 0.902705348 0.707334066 0.497171872 0.108242776 0.149573442 3.652249385 0.013169043 0.027962098 2.44E-06 5.611895487 -0.195371282 T(ph)NSSSSSPVVLK ddPTM_HeLa_CUDC101_4h_R1 1 TNSSSSSPVVLK 12 0 E9PMC9;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7;Q7Z589-2 E9PMC9 C11orf30;EMSY Protein EMSY 1 0 T(0.571)NS(0.405)S(0.018)S(0.002)S(0.003)S(0.001)PVVLK 105.58 0.001972 0 1984.8 2046.3 1974.4 1999.2 2440.8 3071.9 2323.6 1969.6 2293.9 2184.9 TRUE FALSE FALSE 1752.144753 2109.344078 2081.142036 2080.736017 2260.747047 3013.308626 2413.22203 2193.811303 2199.344471 2171.904118 0.806732092 0.971195763 0.958210825 0.958023883 1.040905548 1.387404076 1.111108916 1.010086626 1.012634238 1 11.0847447 -5.611434418 3.489076303 0.918754991 1.169940055 0.43691886 0.105983587 0.148251144 3.559999456 0.016696385 0.035510002 2.45E-06 5.611434418 0.251185065 LGIHEDS(ph)QNR ddPTM_HeLa_CUDC101_4h_R1 1 LGIHEDSQNR 10 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 1 0 LGIHEDS(1)QNR 93.839 0.014712 5105200 4236.8 3516.8 3630.2 3520.6 3666.2 3234.6 3079.4 3019.2 3383.1 3568 TRUE FALSE FALSE 3740.168727 3625.14844 3826.459593 3664.185285 3395.75173 3172.905394 3198.17349 3362.893524 3243.647186 3546.777377 1.054525934 1.022096414 1.078855306 1.0331027 0.95741891 0.894588258 0.901712498 0.948154667 0.914533629 1 11.79229306 -5.610972128 3.394786197 1.030959807 0.91441369 0.513139905 0.043880868 0.082433525 1.883669395 0.00424367 0.009066159 2.45E-06 5.610972128 -0.116546117 REEEFDLFMR ddPTM_HeLa_CUDC101_4h_R1 1 REEEFDLFMR 10 1 P51531;P51531-2;F6VDE0;A0A0U1RQZ9;A0A0U1RRG6 P51531 SMARCA2 Probable global transcription activator SNF2L2 0 0 187.16 2.53E-11 4875400 2027 1670.9 1490.6 1589.1 1745.6 1662.3 1445.4 1327.9 1605.2 1592.1 FALSE FALSE TRUE 1789.398133 1722.378448 1571.186345 1653.910367 1616.830566 1630.594397 1501.149562 1479.062768 1539.032977 1582.630118 1.13064835 1.088301321 0.992769142 1.045039108 1.02160988 1.030306689 0.94851573 0.934559978 0.972452728 1 10.6281084 -4.545448915 0.741395833 1.060588991 0.876184251 0.32544577 0.047414722 1.507537491 0.741628492 0.009134784 0.211928737 2.85E-05 4.545448915 -0.18440474 REEEMMIR ddPTM_HeLa_CUDC101_4h_R1 1 REEEMMIR 8 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 113.71 0.00056843 0 563.72 583.93 433.39 405.44 671.75 430.88 380.26 499.32 513.74 693.03 FALSE FALSE TRUE 497.6415961 601.9201912 456.8203743 421.9755957 622.1963408 422.6616819 394.9267556 556.1605705 492.5634198 688.9078267 0.722363104 0.873731097 0.663108121 0.612528381 0.903163408 0.613524285 0.573265015 0.807307667 0.71499176 1 9.428167158 -10.63974709 0.272638662 1.35455292 0.677329238 0 0.1383723 5.903114484 0.306978473 1.374260854 0.060790268 2.29E-11 10.63974709 -0.677223682 QQAAYYAQT(ph)SPQGMPQHPPAPQGQ ddPTM_HeLa_CUDC101_4h_R1 5 QQAAYYAQTSPQGMPQHPPAPQGQ 24 0 Q96AE4 Q96AE4 FUBP1 Far upstream element-binding protein 1 1 0 QQAAY(0.006)Y(0.006)AQT(0.494)S(0.494)PQGMPQHPPAPQGQ;QQAAY(0.001)Y(0.006)AQT(0.547)S(0.446)PQGMPQHPPAPQGQ;QQAAY(0.003)Y(0.015)AQT(0.491)S(0.491)PQGMPQHPPAPQGQ;QQAAY(0.002)Y(0.006)AQT(0.555)S(0.437)PQGMPQHPPAPQGQ;QQAAYYAQT(0.625)S(0.375)PQGMPQHPPAPQGQ ;;;; 78.991 0.00029336 76064400 10428.6 9689.9 9818.5 9764.1 9107.4 7965.9 7331.54 7082.3 9691.2 10384.4 TRUE FALSE FALSE 9206.175317 9988.434334 10349.31781 10162.3222 8435.565246 7813.96373 7614.319954 7888.520404 9291.724634 10322.63313 0.8918437 0.967624656 1.002585065 0.984469958 0.817191229 0.756973888 0.737633495 0.764196529 0.900131248 1 13.3335234 -5.610586304 3.672020433 0.955913693 0.754834797 0.870108503 0.036269031 0.073188533 1.92687984 0.006779774 0.014314822 2.45E-06 5.610586304 -0.201078896 RAS(ph)WASENGETDAEGTQMTPAK ddPTM_HeLa_CUDC101_4h_R1 2 RASWASENGETDAEGTQMTPAK 22 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 RAS(0.708)WAS(0.27)ENGET(0.021)DAEGT(0.001)QMTPAK;RAS(0.752)WAS(0.248)ENGETDAEGTQMTPAK ; 119.88 3.35E-07 45255000 5581.5 4584.2 4765.5 5621 6464.9 7441.6 7006.1 6249.4 4863.6 5338.4 TRUE FALSE FALSE 4927.245031 4725.433768 5023.137345 5850.248676 5987.997207 7299.663879 7276.327624 6960.806435 4663.120349 5306.646959 0.928504396 0.890474494 0.946574623 1.10243789 1.128395624 1.37556991 1.371172358 1.311714627 0.878731972 1 12.37358486 -5.610342799 1.491458319 0.958353612 1.362258614 0.918956855 0.053295246 0.077011737 0.339383424 0.008010548 0.022105013 2.45E-06 5.610342799 0.403905002 REELFIVSK ddPTM_HeLa_CUDC101_4h_R1 2 REELFIVSK 9 1 P15121;E9PCX2;E9PEF9 P15121 AKR1B1 Aldose reductase 0 0 ; ; 100.69 0.017879 18604400 9462.1 7981.1 7019.3 7953.7 7577.3 7414.4 7611.1 8326.6 6783.4 13053.6 FALSE FALSE TRUE 8352.966982 8226.988231 7398.78459 8278.086265 7018.337675 7272.982673 7904.662677 9274.466487 6503.785381 12975.95661 0.643726489 0.634017859 0.570191841 0.63795576 0.540872468 0.56049684 0.609177644 0.714742409 0.501218182 1 13.66355328 -9.014937276 0.56502906 1.043329773 0.597634086 0 0.16111194 0.230181623 0.119382789 0.05264485 0.011896215 9.66E-10 9.014937276 -0.445695687 REELITNWEQIR ddPTM_HeLa_CUDC101_4h_R1 2 REELITNWEQIR 12 1 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 196.5 3.89E-16 16843800 2704.75 2360.6 1863.63 2044.23 1993.69 2301.57 2045.5 2001.45 2089.24 2170.27 FALSE FALSE TRUE 2387.703305 2433.327288 1964.383475 2127.602535 1846.619461 2257.671387 2124.39562 2229.286978 2003.120643 2157.361138 1.106770333 1.127918384 0.910549208 0.986206017 0.855962142 1.046496735 0.984719518 1.033339731 0.928505019 1 11.07505199 -6.756889526 24.99999777 1.057640528 0.969327481 0.169262571 0.073642513 113.4796245 623531.1899 0.010766038 0.014930666 1.75E-07 6.756889526 -0.088313047 SSGAPQDSDSSATCS(ph)ADEVDEAEGGDKNR ddPTM_HeLa_CUDC101_4h_R1 1 SSGAPQDSDSSATCSADEVDEAEGGDKNR 29 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;C9JQE8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 SSGAPQDS(0.001)DS(0.001)S(0.004)AT(0.016)CS(0.977)ADEVDEAEGGDKNR 115.83 3.65E-11 39644000 1874.7 1720.7 1722.4 1607.2 1699 1512.8 1685.6 1100.9 1710 1651.4 TRUE FALSE FALSE 1654.950508 1773.712727 1815.518154 1672.748563 1573.668155 1483.94586 1750.614157 1226.222006 1639.513076 1641.577399 1.008146499 1.080492902 1.105959521 1.018988543 0.958631713 0.903975567 1.066421941 0.74697788 0.998742476 1 10.68086706 -5.610173173 3.332518054 1.019788038 0.922336805 0.335106817 0.079998424 0.260589856 5.757220422 0.011102268 0.023798477 2.45E-06 5.610173173 -0.097451233 GDGEKS(ph)DEENEEKEGSK ddPTM_HeLa_CUDC101_4h_R1 1 GDGEKSDEENEEKEGSK 17 2 D6R9U7;O15318 D6R9U7 POLR3G DNA-directed RNA polymerase III subunit RPC7 1 0 GDGEKS(1)DEENEEKEGSK 62.792 0.035787 9925400 2982.3 2445.4 2498.9 2687.6 2558 2282.3 2143.3 2102.6 2706.2 2688.5 TRUE FALSE FALSE 2632.719315 2520.739875 2633.998093 2797.211945 2369.301436 2238.76893 2225.967799 2341.951485 2594.649291 2672.508682 0.985111604 0.943211108 0.985590097 1.046661499 0.886545833 0.837703146 0.832913215 0.876312021 0.970866552 1 11.38397892 -5.608485616 5.434850721 0.991210019 0.849532663 0.852557851 0.026817197 0.050844317 2.473152516 0.003794735 0.007704372 2.46E-06 5.608485616 -0.141677356 RET(ph)LS(ph)FNEQET(ph)NKS(ph)HLFVDEGLK ddPTM_HeLa_CUDC101_4h_R1 1 RETLSFNEQETNKSHLFVDEGLK 23 2 Q96RY7 Q96RY7 IFT140 Intraflagellar transport protein 140 homolog 4 0 RET(1)LS(1)FNEQET(1)NKS(1)HLFVDEGLK 45.696 0.0033838 0 121.35 162.95 144.2 147.52 238.11 295.99 149.33 233.38 0 265.2 TRUE FALSE FALSE 107.125537 167.9702964 151.9958882 153.5365032 220.5450997 290.3444839 155.0897081 259.9470358 0 263.6225786 0.406359491 0.637162026 0.576566275 0.582410293 0.836594122 1.101364251 0.588302068 0.986057557 0 1 8.042330129 -5.608336558 7.239928816 0.686095487 0.878929856 0.15230535 0.286035157 0.390011037 27.96880467 0.03662357 0.073550936 2.46E-06 5.608336558 0.192834369 GGGQSVQFTDIETLKQES(ph)PNGSR ddPTM_HeLa_CUDC101_4h_R1 4 GGGQSVQFTDIETLKQESPNGSR 23 1 Q02241;A0A2U3TZL8;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23 1 0 GGGQSVQFTDIET(0.005)LKQES(0.975)PNGS(0.019)R;GGGQSVQFTDIETLKQES(0.974)PNGS(0.026)R;GGGQSVQFTDIET(0.003)LKQES(0.99)PNGS(0.007)R;GGGQSVQFT(0.003)DIET(0.232)LKQES(0.734)PNGS(0.03)R ;;; 130.51 7.48E-08 370307000 9805.5 8559.6 7813.7 8538.8 8747.5 8614.4 7150.8 5897.1 8744 10415.5 TRUE FALSE FALSE 8656.114154 8823.31113 8236.132257 8887.049172 8102.214352 8450.094673 7426.608751 6568.402027 8383.568619 10353.54814 0.83605292 0.852201681 0.795488865 0.858357835 0.782554371 0.816154477 0.717300837 0.634410729 0.809729042 1 13.33783764 -5.606965908 0.048499762 1.556711111 1.99E-15 0.425606401 0.068346261 35.90434919 0.476016285 6.209780664 9.165984611 2.47E-06 5.606965908 -1.556711111 KGS(ph)PCDTLASSTEK ddPTM_HeLa_CUDC101_4h_R1 1 KGSPCDTLASSTEK 14 1 Q15788-2;Q15788-3;Q15788 Q15788-2 NCOA1 Nuclear receptor coactivator 1 1 0 KGS(0.999)PCDT(0.001)LASSTEK 66.674 0.02908 11100000 2596.5 2179.3 2246.1 1992.8 2269.6 1875.3 1753.7 1733.1 2517.2 2221.7 TRUE FALSE FALSE 2292.142206 2246.44165 2367.53096 2074.074998 2102.17613 1839.531777 1821.340796 1930.389099 2413.439951 2208.48523 1.037879799 1.017186631 1.072015755 0.939139175 0.951863341 0.832938229 0.824701371 0.874078338 1.092803302 1 11.10884147 -5.605767952 1.561653284 1.021015662 0.840040318 0.823480282 0.038339612 0.097908498 0.474289845 0.004724454 0.012769428 2.48E-06 5.605767952 -0.180975344 TEFLDLDNSPLSPPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 TEFLDLDNSPLSPPSPR 17 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 TEFLDLDNS(0.023)PLS(0.328)PPS(0.648)PR;TEFLDLDNS(0.055)PLS(0.112)PPS(0.833)PR ; 108.28 0.0007945 8954600 2152.29 2114.2 1747.5 1648.36 2759.7 2681.1 2563.1 2454.7 2868 2387.9 TRUE FALSE FALSE 1900.001829 2179.335996 1841.975136 1715.587246 2556.122429 2629.962485 2661.959626 2734.133126 2749.779826 2373.696665 0.80044003 0.918118995 0.775994323 0.72274915 1.076853023 1.107960644 1.121440522 1.151846049 1.158437751 1 11.21291987 -5.605427152 7.819020243 0.882488209 1.120926557 0.458767202 0.116620337 0.133937115 10.99661945 0.014581381 0.02924575 2.48E-06 5.605427152 0.238438347 KPGPSGPSES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 KPGPSGPSESPK 12 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPGPS(0.009)GPS(0.134)ES(0.857)PK;KPGPS(0.005)GPS(0.349)ES(0.645)PK;KPGPSGPS(0.14)ES(0.86)PK;KPGPSGPS(0.01)ES(0.99)PK ;;; 97.129 0.0074698 930410000 22614.2 20753.7 22465.2 22643.6 20910.2 19037.5 15991.9 18421.5 21883.8 23557.8 TRUE FALSE FALSE 19963.39776 21393.0969 23679.73667 23567.10388 19367.6962 18674.39141 16608.71294 20518.5291 20981.7405 23417.67716 0.852492654 0.913544787 1.01119067 1.006380937 0.82705454 0.797448495 0.709238274 0.876198308 0.895978724 1 14.51531036 -5.604788879 5.746133858 0.938639569 0.789810089 0.571212026 0.061326464 0.13554425 7.312699097 0.010679804 0.021625891 2.48E-06 5.604788879 -0.14882948 AQPFGFIDSDT(ph)DAEEERIPATPVVIPMK ddPTM_HeLa_CUDC101_4h_R1 2 AQPFGFIDSDTDAEEERIPATPVVIPMK 28 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AQPFGFIDS(0.234)DT(0.475)DAEEERIPAT(0.291)PVVIPMK;AQPFGFIDS(0.393)DT(0.401)DAEEERIPAT(0.206)PVVIPMK ; 49.744 0.028928 91985000 5248.3 5506.1 5477.5 4676 4671.1 4261.49 3637.79 3193.84 5397.6 6101 TRUE FALSE FALSE 4633.10223 5675.736415 5773.630219 4866.707491 4326.522259 4180.209178 3778.100779 3557.413836 5175.108643 6064.710981 0.763944439 0.935862638 0.952004182 0.802463218 0.713392983 0.689267665 0.622964687 0.586575988 0.853314966 1 12.56622318 -5.599608501 1.234111598 0.895045148 0.610369216 0.776431685 0.063739686 0.239299746 0.705631016 0.014809358 0.046338209 2.51E-06 5.599608501 -0.284675932 ALSAS(ph)HTDLAH ddPTM_HeLa_CUDC101_4h_R1 2 ALSASHTDLAH 11 0 Q07866-6;Q07866-4;Q07866-7;H0YG16;H0YJK1 Q07866-6 KLC1 Kinesin light chain 1 1 0 ALS(0.002)AS(0.985)HT(0.013)DLAH;ALSAS(0.949)HT(0.051)DLAH ; 120.03 0.002716 103861200 10314.1 7058.8 6858.1 6965.4 10214.9 9702.5 9182 9426.9 8341.9 8085.1 TRUE FALSE FALSE 9105.096833 7276.273261 7228.869631 7249.479119 9461.367178 9517.440978 9536.152816 10500.02019 7998.043351 8037.009466 1.132896119 0.905345862 0.899447694 0.902012017 1.177224839 1.184201788 1.186529997 1.306458607 0.995151665 1 12.97244307 -5.599207061 7.732727172 1.027529697 1.215114 0.636330327 0.083756034 0.171413068 14.98802075 0.014794852 0.029684883 2.52E-06 5.599207061 0.187584302 S(ph)PSTLLPK ddPTM_HeLa_CUDC101_4h_R1 2 SPSTLLPK 8 0 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;P27816-4;H0Y2V1;H7C4C5;B5MEG9;F8W9U4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 S(0.995)PS(0.005)TLLPK;S(0.595)PS(0.4)T(0.006)LLPK ; 125.57 0.0064093 767679000 6789.1 8160.7 5955.7 5952.5 6572.2 5790.6 5345.2 5299.5 6177.9 6484.5 TRUE FALSE FALSE 5993.29199 8412.121494 6277.683157 6195.268679 6087.3819 5680.153953 5551.366155 5902.773659 5923.244347 6445.929906 0.929779268 1.305028385 0.973898762 0.961113256 0.944376062 0.881200081 0.861220373 0.915736557 0.918912311 1 12.65417278 -5.59742898 1.904824913 0.995716462 0.883498519 0.22802943 0.104247921 0.468337502 3.402684852 0.016166806 0.040229284 2.53E-06 5.59742898 -0.112217943 GGSCPSRAKMS(ph)MTGAGK ddPTM_HeLa_CUDC101_4h_R1 1 GGSCPSRAKMSMTGAGK 17 2 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7;Q96KQ7-3 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 0 GGS(0.203)CPS(0.203)RAKMS(0.576)MT(0.017)GAGK 63.31 0.019881 41628000 2175.9 1657.3 1852.2 1516.6 1538.7 1318.4 947.89 1097.1 1828.9 1740.8 TRUE FALSE FALSE 1920.8443 1708.359449 1952.335535 1578.453503 1425.193167 1293.253717 984.4504348 1221.989429 1753.511968 1730.445644 1.110028684 0.987236701 1.128227021 0.912165897 0.823598922 0.747352984 0.568899947 0.706170363 1.013329701 1 10.75692791 -5.597184565 1.304422176 1.053195472 0.641908617 0.877499782 0.060937859 0.105301675 0.349415186 0.009896468 0.029903768 2.53E-06 5.597184565 -0.411286855 REPAEQPGDGER ddPTM_HeLa_CUDC101_4h_R1 2 REPAEQPGDGER 12 1 Q15424-2;Q15424;Q15424-4;Q15424-3;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 0 ; ; 117.2 0.0041245 6722700 2096.74 1710.48 1959.21 1743.5 1786.91 1788.02 1805.39 1628.48 2121.07 1977.53 FALSE FALSE TRUE 1850.963316 1763.177861 2065.130819 1814.607466 1655.093209 1753.916498 1875.024497 1813.859581 2033.638597 1965.767564 0.941598259 0.896941171 1.050546798 0.923103779 0.841957737 0.89222985 0.953838354 0.922723324 1.034526479 1 10.94087703 -6.014999315 24.6678395 0.970909226 0.902711092 0.374067931 0.049377414 525.4632685 864177.3545 0.007075775 0.012017529 9.66E-07 6.014999315 -0.068198133 REPEDEGEDDD ddPTM_HeLa_CUDC101_4h_R1 1 REPEDEGEDDD 11 1 P39687 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 0 140.83 0.024808 29615000 3518.4 2648.6 2797.4 3021.1 2772.9 2595.1 2839.7 1890.5 3234.8 3430 FALSE FALSE TRUE 3105.978486 2730.200227 2948.635906 3144.313516 2568.348691 2545.602791 2949.22818 2105.706878 3101.460175 3409.598207 0.910951466 0.800739577 0.86480451 0.922194735 0.753270191 0.746599053 0.864978218 0.617582117 0.909626292 1 11.73538602 -1.52733279 0.112502047 1.092940552 1.73E-19 0.557544036 0.069993655 36.71198351 0.324718312 0.353223425 6.195950925 0.029693898 1.52733279 -1.092940552 DGESDGFADEEES(ph)GEEGEEDQEEGREPGAGR ddPTM_HeLa_CUDC101_4h_R1 2 DGESDGFADEEESGEEGEEDQEEGREPGAGR 31 1 P48681 P48681 NES Nestin 1 0 DGES(0.001)DGFADEEES(0.999)GEEGEEDQEEGREPGAGR;DGES(0.004)DGFADEEES(0.996)GEEGEEDQEEGREPGAGR ; 89.345 9.36E-08 62160000 2173.5 1971.4 1762.99 1705.53 1777.94 1554.42 1567.93 1449.55 2239.5 1501.34 TRUE FALSE FALSE 1918.725625 2032.136497 1858.302572 1775.088885 1646.784908 1524.772028 1628.405585 1614.560913 2147.186862 1492.409963 1.285655867 1.361647636 1.245168967 1.189411039 1.103440039 1.021684434 1.091124842 1.08184812 1.438737958 1 10.54342818 -5.594742032 4.685216571 1.16932209 1.066602071 0.180313563 0.126836068 0.372885082 15.59136478 0.019868681 0.040936463 2.54E-06 5.594742032 -0.102720019 REPLPSR ddPTM_HeLa_CUDC101_4h_R1 2 REPLPSR 7 1 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q8IZ40;Q96E39 P38159;Q96E39 RBMX;RCOR2;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;REST corepressor 2;RNA binding motif protein, X-linked-like-1" 0 0 ; ; 131.03 0.011182 14411300 4821.3 3646.1 3966.6 3973.3 3357 3547.2 3618.3 2624.5 3691.8 3160.7 FALSE FALSE TRUE 4256.154523 3758.432019 4181.046394 4135.348348 3109.360798 3479.54307 3757.859043 2923.262471 3539.622441 3141.900016 1.354643528 1.196229034 1.330738207 1.31619349 0.989643459 1.107464608 1.196046667 0.930412316 1.126586595 1 11.61742156 -4.258893701 23.59832952 1.178879981 0.930412125 0.272879148 0.122085092 143.3866859 1328999.664 0.021395043 0.192857156 5.51E-05 4.258893701 -0.248467856 KGTENGVNGTLTSNVADS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 KGTENGVNGTLTSNVADSPR 20 1 G3XAN4;Q15629-2;Q15629 G3XAN4 TRAM1 Translocating chain-associated membrane protein 1 1 0 KGTENGVNGTLT(0.003)S(0.039)NVADS(0.957)PR 100.81 0.00037292 5945200 3059.3 2664.7 2475.2 2393.9 2494.3 2096 1797.6 2173.4 2042.1 2388.1 TRUE FALSE FALSE 2700.693492 2746.796249 2609.016799 2491.533589 2310.300458 2056.022292 1866.934034 2420.811071 1957.923774 2373.895475 1.137663187 1.157083906 1.099044514 1.049554884 0.973210692 0.866096386 0.786443234 1.019763126 0.824772529 1 11.2130407 -5.5901664 2.440791126 1.076933388 0.88147463 0.274797038 0.104470042 0.164201012 1.968977253 0.011595397 0.026789228 2.57E-06 5.5901664 -0.195458758 TLSS(ph)PSNRPSGETSVPPPPAVGR ddPTM_HeLa_CUDC101_4h_R1 3 TLSSPSNRPSGETSVPPPPAVGR 23 1 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 0 T(0.009)LS(0.152)S(0.774)PS(0.052)NRPS(0.011)GETSVPPPPAVGR;T(0.063)LS(0.194)S(0.534)PS(0.194)NRPS(0.01)GET(0.002)S(0.002)VPPPPAVGR;T(0.003)LS(0.185)S(0.698)PS(0.028)NRPS(0.071)GET(0.007)S(0.007)VPPPPAVGR ;; 97.124 6.53E-05 472554000 2396.17 2022.31 2278.56 2322.77 2038.33 1716.64 1823.43 1507.12 2192.43 2241.38 TRUE FALSE FALSE 2115.294585 2084.614974 2401.745846 2417.5026 1887.966457 1683.897952 1893.760306 1678.684449 2102.057107 2228.048172 0.94939356 0.935623834 1.077959568 1.085031567 0.847363392 0.755772686 0.849963807 0.753432744 0.943452271 1 11.12156471 -5.590101875 6.371137942 0.987237315 0.794010436 0.757827836 0.055050526 0.080064306 5.845957323 0.008222284 0.016599113 2.57E-06 5.590101875 -0.193226879 QEEEAAQQGPVVVS(ph)PASDYKDK ddPTM_HeLa_CUDC101_4h_R1 2 QEEEAAQQGPVVVSPASDYKDK 22 1 I3L0X5;I3L4C3;O75391 I3L0X5 SPAG7 Sperm-associated antigen 7 1 0 QEEEAAQQGPVVVS(1)PASDYKDK;QEEEAAQQGPVVVS(1)PASDYKDK ; 132.16 1.60E-07 177192000 5983 5177.5 5276.9 4653.8 5654.8 5009.2 3820.8 1961.28 6163.8 6089.2 TRUE FALSE FALSE 5281.68181 5337.012638 5562.185176 4843.602079 5237.65667 4913.657856 3968.169536 2184.544187 5909.725555 6052.981168 0.872575292 0.881716379 0.91891665 0.800201082 0.865301993 0.811774846 0.655572754 0.360903847 0.976333048 1 12.56343015 -4.14271623 0.822396544 0.926816458 3.32E-31 0.915936034 0.051311104 0.665798486 0.286557505 0.010094007 0.585762732 7.20E-05 4.14271623 -0.926816458 down NAASFPLRS(ph)PQPVCSPAGSEGTPK ddPTM_HeLa_CUDC101_4h_R1 2 NAASFPLRSPQPVCSPAGSEGTPK 24 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 NAASFPLRS(0.997)PQPVCS(0.002)PAGSEGTPK;NAAS(0.025)FPLRS(0.968)PQPVCS(0.007)PAGSEGTPK ; 119.01 1.15E-08 46357000 4091.4 2909.8 3208.7 3328.5 2868.2 2696.9 2517.1 2018.72 3707.9 2485.7 TRUE FALSE FALSE 3611.812294 2999.447489 3382.172028 3464.250617 2656.6186 2645.461126 2614.18539 2248.522925 3555.058793 2470.914946 1.461730725 1.213901553 1.368793383 1.402011276 1.075155826 1.070640303 1.05798275 0.909996084 1.438762107 1 11.27082964 -5.587675167 8.312325552 1.246807114 1.026459207 0.460326569 0.141612013 0.2961755 34.04840264 0.02720261 0.054542734 2.58E-06 5.587675167 -0.220347907 S(ph)RGQGYVGGQR ddPTM_HeLa_CUDC101_4h_R1 2 SRGQGYVGGQR 11 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(1)RGQGYVGGQR;S(1)RGQGYVGGQR ; 68.277 0.035917 14238600 1735.06 1401.63 1475.84 1597.34 1437.25 1368.69 1374.69 444.038 1654.71 1567.18 TRUE FALSE FALSE 1531.678897 1444.812559 1555.628375 1662.486429 1331.226931 1342.584519 1427.712254 494.5854911 1586.502153 1557.858344 0.983195233 0.927435132 0.998568567 1.067161489 0.854523735 0.861814249 0.916458329 0.317477833 1.018386659 1 10.60534834 -4.141834979 2.109081459 0.977568026 3.87E-16 0.894601671 0.065910982 0.233979295 0.863449637 0.009272966 0.482991733 7.21E-05 4.141834979 -0.977568026 down RGS(ph)FDATGSGFSMTFSSSSYSSSGYGR ddPTM_HeLa_CUDC101_4h_R1 2 RGSFDATGSGFSMTFSSSSYSSSGYGR 27 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 RGS(0.754)FDAT(0.077)GS(0.162)GFS(0.006)MTFSSSSYSSSGYGR;RGS(0.996)FDAT(0.003)GS(0.001)GFSMTFSSSSYSSSGYGR ; 142.12 1.97E-11 36463800 1203.73 787.71 939.42 935.01 1237.11 1291.63 1066.71 1283.74 980.99 930.81 TRUE FALSE FALSE 1062.630594 811.9784114 990.2078868 973.1437493 1145.85086 1266.99431 1107.853362 1429.875773 940.553177 925.2735007 1.148450262 0.877555026 1.070178586 1.051736323 1.238391523 1.369318703 1.197325289 1.545354721 1.016513686 1 9.853736063 -5.586952947 2.480584376 1.053584219 1.355121814 0.690457043 0.10334206 0.14108467 1.747521835 0.015513137 0.035757356 2.59E-06 5.586952947 0.301537594 APS(ph)PTAEQPPGGGDSAR ddPTM_HeLa_CUDC101_4h_R1 4 APSPTAEQPPGGGDSAR 17 0 Q15742;Q15742-3;Q15742-2 Q15742 NAB2 NGFI-A-binding protein 2 1 0 APS(0.511)PT(0.489)AEQPPGGGDSAR;APS(0.918)PT(0.082)AEQPPGGGDSAR;APS(0.996)PT(0.004)AEQPPGGGDSAR;APS(0.978)PT(0.022)AEQPPGGGDSAR ;;; 188.16 3.83E-11 138428400 1820.59 2003.57 1568.06 1532.7 2990.69 3985.31 2552.89 2235.65 3455.7 2702.88 TRUE FALSE FALSE 1607.1832 2065.297617 1652.834067 1595.210131 2770.072757 3909.296852 2651.355822 2490.147359 3313.254583 2686.80315 0.598176759 0.768682148 0.615167534 0.593720508 1.030992076 1.454999356 0.986806876 0.926806774 1.233158664 1 11.39167491 -5.586119499 7.185680473 0.773321786 1.13101679 0.293033235 0.227697819 0.173479922 16.3117381 0.030907736 0.06216389 2.59E-06 5.586119499 0.357695004 DVDASPS(ph)PLSVQDLK ddPTM_HeLa_CUDC101_4h_R1 1 DVDASPSPLSVQDLK 15 0 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 0 DVDAS(0.108)PS(0.892)PLSVQDLK 279.91 1.04E-86 24751000 4922.8 4557.5 4120.1 4349.2 4354.7 3130.4 3618 4197.2 4019.1 4461.2 TRUE FALSE FALSE 4345.756846 4697.911173 4342.845069 4526.579175 4033.462457 3070.692836 3757.547472 4674.992282 3853.430997 4434.664584 0.979951643 1.059361105 0.979295048 1.020726391 0.909530446 0.692429558 0.847312666 1.054192982 0.868934036 1 12.11460928 -5.585582519 5.428233302 0.996491444 0.853370799 0.245147638 0.093732673 0.151571523 8.772261615 0.01184734 0.024158658 2.60E-06 5.585582519 -0.143120645 RKPS(ph)TSDDSDSNFEK ddPTM_HeLa_CUDC101_4h_R1 1 RKPSTSDDSDSNFEK 15 2 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 RKPS(0.864)T(0.1)S(0.035)DDSDSNFEK 75.608 0.024003 11211000 3251.4 2865.5 3005.2 3097 2761.4 2103.9 2578 1722.1 2351.7 3219.7 TRUE FALSE FALSE 2870.275821 2953.782659 3167.670202 3223.309046 2557.697023 2063.771613 2677.434324 1918.136903 2254.761931 3200.549081 0.896807313 0.922898723 0.989727113 1.007111269 0.799143197 0.644817986 0.836554683 0.599314947 0.704492221 1 11.64410372 -5.584704858 4.408003097 0.954088779 0.708914333 0.477258301 0.10278744 0.07788507 3.056935128 0.00975438 0.020304923 2.60E-06 5.584704858 -0.245174447 RESGEEFR ddPTM_HeLa_CUDC101_4h_R1 1 RESGEEFR 8 1 P30533;A0A3B3IRQ7;D6REW6 P30533 LRPAP1 Alpha-2-macroglobulin receptor-associated protein 0 0 114.89 0.0097751 3356300 580.84 301.64 578.76 814.64 515.14 321 532.46 386.37 656.31 889.43 FALSE FALSE TRUE 512.7548157 310.9331709 610.0495163 847.8645404 477.1391485 314.8774598 552.9971606 430.352799 629.256624 884.1396308 0.57994778 0.351678807 0.689992276 0.95897131 0.539664926 0.356139968 0.625463605 0.48674755 0.711716342 1 9.78813042 -9.114747489 0.712633504 1.025569542 0.574237652 0.206255058 0.186683743 0.577792032 0.491638948 0.152551673 0.036768017 7.68E-10 9.114747489 -0.45133189 RESPSPAPKPR ddPTM_HeLa_CUDC101_4h_R1 1 RESPSPAPKPR 11 2 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 0 0 63.694 0.035386 1678600 901.22 1023.5 968.56 1144.9 1220.8 1001.2 805.14 673.66 1101.8 1372.2 FALSE FALSE TRUE 795.5803578 1055.032822 1020.923283 1191.593971 1130.744016 982.1037781 836.1945195 750.3467314 1056.383338 1364.038093 0.583253768 0.773462872 0.748456578 0.873578221 0.828968063 0.719997325 0.613028715 0.550092212 0.774452959 1 10.41366822 -9.485687273 1.199620353 1.001697454 0.706418392 0.171648901 0.119525274 0.326943473 0.834104397 0.080295955 0.019149997 3.27E-10 9.485687273 -0.295279062 RDSS(ph)DDWEIPDGQITVGQR ddPTM_HeLa_CUDC101_4h_R1 2 RDSSDDWEIPDGQITVGQR 19 1 H7C560;A0A2U3TZI2;A0A2R8Y8E0;P15056;A0A2R8Y679;A0A2R8Y492;A0A2R8YDP5 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 RDS(0.124)S(0.873)DDWEIPDGQIT(0.003)VGQR;RDS(0.257)S(0.743)DDWEIPDGQITVGQR ; 129.2 2.42E-05 48673000 2727.32 2797.97 2431.01 2353.62 2827.12 2783.79 2606.01 2405.45 2708.01 2587.7 TRUE FALSE FALSE 2407.627684 2884.172139 2562.437754 2449.610797 2618.56899 2730.693844 2706.524679 2679.276705 2596.384682 2572.308245 0.935979461 1.121238928 0.996162788 0.952300643 1.017984137 1.061573335 1.05217743 1.041584619 1.009359857 1 11.32884782 -5.58373218 0.52116308 0.975917231 1.066434406 0.029334115 0.050423385 1.732940199 0.686188505 0.012882908 0.07602218 2.61E-06 5.58373218 0.090517176 KTQQLHPVLQKPS(ph)VFGNDSDDDDETSVSESLQR ddPTM_HeLa_CUDC101_4h_R1 1 KTQQLHPVLQKPSVFGNDSDDDDETSVSESLQR 33 2 Q9H0G5 Q9H0G5 NSRP1 Nuclear speckle splicing regulatory protein 1 1 0 KT(0.006)QQLHPVLQKPS(0.579)VFGNDS(0.277)DDDDET(0.085)S(0.04)VS(0.01)ES(0.003)LQR 43.921 0.014466 60089000 1050.7 864.55 934.09 1012.5 1326 1087.2 1173.5 1188.7 1066.3 915.49 TRUE FALSE FALSE 927.5385388 891.1857608 984.5897309 1053.794126 1228.183622 1066.463471 1218.762288 1324.016803 1022.346663 910.0446248 1.019223139 0.97927699 1.081913682 1.157958739 1.34958615 1.171880414 1.339233544 1.454892175 1.123402781 1 9.829793481 -5.582903642 0.624106695 0.998884918 1.430452639 0.762886291 0.075451294 0.301590577 0.182924471 0.012880419 0.069506066 2.61E-06 5.582903642 0.43156772 LELSS(ph)SASPQEER ddPTM_HeLa_CUDC101_4h_R1 1 LELSSSASPQEER 13 0 A0A075B6T1;Q9C0C7-6;Q9C0C7-4;Q9C0C7-2;Q9C0C7-3;Q9C0C7;Q9C0C7-5 A0A075B6T1 AMBRA1 Activating molecule in BECN1-regulated autophagy protein 1 1 0 LELS(0.031)S(0.517)S(0.079)AS(0.372)PQEER 90.689 0.017332 9990100 1356.6 1358 1286.7 1492 1215.5 1104.7 1086.9 924.56 1183.9 1435.9 TRUE FALSE FALSE 1197.581404 1399.83837 1356.262894 1552.850209 1125.834987 1083.629688 1128.822097 1029.808173 1135.099141 1427.359203 0.839018939 0.980719056 0.950190317 1.087918308 0.788753794 0.759184994 0.790846547 0.721477937 0.795244209 1 10.47913273 -5.582859069 12.72099765 0.939365697 0.762772297 0.554730438 0.078050407 0.524945925 110.4283709 0.011333341 0.022669957 2.61E-06 5.582859069 -0.1765934 RFDAQTGADR ddPTM_HeLa_CUDC101_4h_R1 2 RFDAQTGADR 10 1 P43686;P43686-2 P43686 PSMC4 26S protease regulatory subunit 6B 0 0 ; ; 146.71 0.00074046 18347500 7480.3 4983.7 4545.4 6389.2 5141 5428 4835.1 4878.5 4562.6 4099.6 FALSE FALSE TRUE 6603.470573 5137.24189 4791.138073 6649.779192 4761.758672 5324.469944 5021.591427 5433.84872 4374.527697 4075.215397 1.620397925 1.260606223 1.17567726 1.631761403 1.168467973 1.306549329 1.232227241 1.333389328 1.073446989 1 11.9926606 -9.626937355 1.458051434 1.000889574 1.374456535 0.355134479 0.158628746 0.337743047 1.294695571 0.121228579 0.027965429 2.36E-10 9.626937355 0.373566961 RFDDAVVQSDMK ddPTM_HeLa_CUDC101_4h_R1 7 RFDDAVVQSDMK 12 1 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ;;;;;; ;;;;;; 129.37 0.0013855 502850000 47130.7 41093.7 36494.5 40718.2 42561.9 39485.8 37140.7 41961.5 38747.7 35876.7 FALSE FALSE TRUE 41606.11079 42359.74819 38467.50306 42378.8642 39422.19343 38732.67415 38573.22924 46738.22755 37150.50341 35663.30379 1.166636468 1.187768481 1.078629823 1.188304495 1.105399367 1.086065228 1.081594388 1.310541161 1.041701117 1 15.12215274 -9.266004513 0.884628624 0.995472989 1.145765054 0.359180462 0.068209722 0.49486178 0.662589866 0.050068037 0.012151075 5.42E-10 9.266004513 0.150292065 RFDEDDDKSFR ddPTM_HeLa_CUDC101_4h_R1 1 RFDEDDDKSFR 11 2 A0A2R8Y7R9;Q13136-2;Q13136 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 0 0 60.167 0.039213 10076000 2083.5 1912.5 2027.5 2285.9 2467 2150.9 2232.7 2675.4 2242.1 1373.5 FALSE FALSE TRUE 1839.275288 1971.421858 2137.112783 2379.128883 2285.014325 2109.875166 2318.815987 2979.956722 2149.679689 1365.330361 1.347128388 1.443915637 1.565271559 1.742529831 1.67359812 1.545322089 1.69835525 2.182590241 1.574475856 1 10.41503436 -1 0.074119456 0.280804215 4.679035905 0.418045815 0.218825706 52.89544136 0.290810056 2.905752432 24.18803505 0.1 1 4.39823169 RFDEILEASDGIMVAR ddPTM_HeLa_CUDC101_4h_R1 11 RFDEILEASDGIMVAR 16 1 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ;;;;;;;;;; ;;;;;;;;;; 257.37 9.70E-70 315471300 24077.79 23924 20796.61 20401.59 24510.1 21986.68 21255.62 21193.68 23153.74 24000.87 FALSE FALSE TRUE 21255.42796 24661.07008 21920.93764 21233.65502 22702.03875 21567.32071 22075.45638 23606.28286 22199.33304 23858.11176 0.8909099 1.033655569 0.918804383 0.889997299 0.951543818 0.903982718 0.925280953 0.989444727 0.930473177 1 14.54219225 RFDTEEEFK ddPTM_HeLa_CUDC101_4h_R1 1 RFDTEEEFK 9 1 P54136-2;P54136 P54136-2 RARS "Arginine--tRNA ligase, cytoplasmic" 0 0 104.43 0.014206 6665100 1817.3 1764 1813.7 1542.1 2198.4 2061.3 2011.9 1462.2 2243 2112.3 FALSE FALSE TRUE 1604.278849 1818.346749 1911.754108 1604.993504 2036.228412 2021.984137 2089.499657 1628.650938 2150.542591 2099.735946 0.764038379 0.865988294 0.910473582 0.764378734 0.969754514 0.962970673 0.995124964 0.775645595 1.024196683 1 11.0359922 -4.208596316 21.02831434 0.893872133 0.775640916 0.135286003 0.091493693 11256.47779 4478419.11 0.014196876 13.09298845 6.19E-05 4.208596316 -0.118231218 RFDYDWER ddPTM_HeLa_CUDC101_4h_R1 1 RFDYDWER 8 1 Q93008;Q93008-3;O00507-2;O00507 Q93008 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y 0 0 109.29 0.012472 4652200 1052.6 601.44 369.93 612.04 606.99 670.22 672.26 575.43 383.08 331.96 FALSE FALSE TRUE 929.2158236 619.9696535 389.9295348 637.0016367 562.213557 657.4366702 698.1892934 640.9346252 367.2892803 329.9854872 2.815929366 1.878778545 1.181656618 1.930392885 1.703752374 1.992319953 2.115818182 1.942311557 1.113046769 1 8.366258766 -5.099811043 6.465759729 1.822584636 2.035025244 0.030845519 0.512030094 1.078361416 58.9368739 0.09782921 0.253663824 7.95E-06 5.099811043 0.212440608 RFEK(ac)PLEEK ddPTM_HeLa_CUDC101_4h_R1 2 RFEKPLEEK 9 2 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 1 ; RFEK(1)PLEEK;RFEK(1)PLEEK 146.71 0.0022148 17315500 14152.7 5853.9 5871.9 4712.9 11634.9 10717.6 12423 8969.9 10875.5 10127.5 FALSE TRUE FALSE 12493.74196 6034.25172 6189.352676 4905.112433 10776.61661 10513.17964 12902.15927 9990.997158 10427.20729 10067.26118 1.241026903 0.59939358 0.61480005 0.48723405 1.07046161 1.04429392 1.281595763 0.992424551 1.035754124 1 13.29738363 -7.287082669 24.90869832 1.113818255 0.875730563 0.150714507 0.239850989 1051.757175 1021625.072 0.046221746 0.052866473 5.16E-08 7.287082669 -0.238087693 RFEKPLEEK ddPTM_HeLa_CUDC101_4h_R1 1 RFEKPLEEK 9 2 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 0 63.426 0.037989 36231000 5231.8 4075.6 4301.8 4124 3576.9 4200.9 3904 3798.4 3881.4 4773.6 FALSE FALSE TRUE 4618.536335 4201.164405 4534.36832 4292.194545 3313.039213 4120.774832 4054.578588 4230.794502 3721.407049 4745.206415 0.973305675 0.885349137 0.955568193 0.904532737 0.698186533 0.86840792 0.85445779 0.891593354 0.784245557 1 12.21225513 -6.739647458 0.915563119 0.990813649 0.836650954 0 0.087598173 0.291256996 0.487690943 0.011790682 0.018951466 1.82E-07 6.739647458 -0.154162696 RFELYFQGPSSNKPR ddPTM_HeLa_CUDC101_4h_R1 2 RFELYFQGPSSNKPR 15 2 P33993;P33993-2;C9J8M6 P33993 MCM7 DNA replication licensing factor MCM7 0 0 ; ; 109.84 0.0032495 7339900 1152.7 834.02 690.68 909.4 1173.16 1174.85 1049.68 652.99 1188.39 617.41 FALSE FALSE TRUE 1017.582253 859.7151676 728.02025 946.4892628 1086.618324 1152.441694 1090.166509 727.3237421 1139.404061 613.7376179 1.658008608 1.400786171 1.186207638 1.542172478 1.770493273 1.87774329 1.776274547 1.185072775 1.856500283 1 9.261478203 -6.046980399 5.054337042 1.318976134 1.676237665 0.073438546 0.288307936 0.228652472 13.44989986 0.045114008 0.077309323 8.97E-07 6.046980399 0.357261531 STPQPPS(ph)GK ddPTM_HeLa_CUDC101_4h_R1 1 STPQPPSGK 9 0 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 1 0 STPQPPS(1)GK 90.913 0.027386 12418000 4336.6 3864.9 3688.5 4399.3 3504.5 3539.2 2781.6 3001.7 4540.3 3686 TRUE FALSE FALSE 3828.270322 3983.972988 3887.911467 4578.722469 3245.980017 3471.695657 2888.887244 3343.401395 4353.146912 3664.075508 1.044812072 1.087306465 1.061089341 1.249625577 0.88589332 0.947495664 0.788435511 0.912481576 1.188061464 1 11.83923352 -5.581945664 24.99999961 1.045692079 0.880584971 0.547325845 0.089387496 45.8289355 19396.80305 0.011453958 0.022907919 2.62E-06 5.581945664 -0.165107109 AIST(ph)PETPLTK ddPTM_HeLa_CUDC101_4h_R1 1 AISTPETPLTK 11 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 0 AIS(0.085)T(0.915)PET(0.001)PLTK 155.47 0.001054 84490000 7061.5 6175.2 5656.3 5761.3 5359.1 4872 3505.8 4248.9 7258.3 6305.7 TRUE FALSE FALSE 6233.761675 6365.450593 5962.096687 5996.270716 4963.76987 4779.074717 3641.01988 4732.577601 6959.109802 6268.193416 0.994506911 1.015515982 0.951166675 0.956618649 0.791898006 0.762432554 0.580872293 0.755014609 1.11022576 1 12.61383398 -5.581896789 1.363279046 0.997608843 0.670051924 0.852135792 0.058960036 0.082772506 0.30076533 0.006399284 0.019048502 2.62E-06 5.581896789 -0.327556919 TPFNTDLGENS(ph)GIGK ddPTM_HeLa_CUDC101_4h_R1 2 TPFNTDLGENSGIGK 15 0 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 1 0 T(0.015)PFNT(0.233)DLGENS(0.752)GIGK;TPFNTDLGENS(1)GIGK ; 186.94 6.92E-11 21081500 3303.8 2587.04 2451.7 2520.15 3743.1 3928 3312.3 3065.4 2586.88 3399.7 TRUE FALSE FALSE 2916.533572 2666.743636 2584.246318 2622.93261 3466.97897 3853.079944 3440.056521 3414.352745 2480.247711 3379.478433 0.863012926 0.789099173 0.764687915 0.77613533 1.025891728 1.140140415 1.017925277 1.010319436 0.733914348 1 11.72258489 -5.580050213 10.71464448 0.8975226 1.057415738 0.490693038 0.096549448 0.423416042 77.41848183 0.015122711 0.03026345 2.63E-06 5.580050213 0.159893138 STLTTLPFPGAEANS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 1 STLTTLPFPGAEANSPGK 18 0 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 0 STLTTLPFPGAEANS(1)PGK 95.767 0.0033509 14030000 2365.3 1961.7 1862.4 1597.1 1665 1506.7 1323 1009 2091.9 1872.5 TRUE FALSE FALSE 2088.04312 2022.137652 1963.086977 1662.236641 1542.176267 1477.962208 1374.028553 1123.860481 2005.670997 1861.362287 1.121782221 1.086375106 1.054650667 0.893021554 0.828520207 0.794021786 0.738184373 0.603783847 1.077528545 1 10.86214317 -5.57815851 0.923204621 1.063740199 0.661128227 0.915664492 0.048224744 0.164301687 0.252442431 0.010435806 0.041769387 2.64E-06 5.57815851 -0.402611972 KVELS(ph)ESEEDKGGK ddPTM_HeLa_CUDC101_4h_R1 3 KVELSESEEDKGGK 14 2 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 KVELS(0.997)ES(0.003)EEDKGGK;KVELS(0.996)ES(0.004)EEDKGGK;KVELS(1)ESEEDKGGK ;; 107.15 0.0035562 822580000 18105.8 15711.3 15846.1 16159.3 15596.4 14086.7 13033.9 12342.7 17186.4 15564.2 TRUE FALSE FALSE 15983.46557 16195.34653 16702.7881 16818.3461 14445.88464 13818.01967 13536.62189 13747.74308 16477.96932 15471.62345 1.033082638 1.046777449 1.07957566 1.087044689 0.933701928 0.893120216 0.874932223 0.888577926 1.06504462 1 13.91733697 -5.577859525 5.111984903 1.028254432 0.888355273 0.861163449 0.02988649 0.065124883 3.584646321 0.004990681 0.010252384 2.64E-06 5.577859525 -0.139899159 QIASNSPGS(ph)S(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 QIASNSPGSSPK 12 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 2 0 QIAS(0.11)NS(0.017)PGS(0.875)S(0.998)PK 132.79 3.96E-05 0 4837.4 4290.6 3879.2 4390.9 4097.1 3489.6 3699.9 3386.9 4253 4066.4 TRUE FALSE FALSE 4270.367305 4422.7883 4088.921286 4569.979881 3794.865096 3423.041694 3842.606382 3772.451006 4077.68954 4042.212872 1.056442953 1.094150269 1.011555159 1.130563883 0.93880882 0.846823708 0.950619501 0.933263815 1.008776546 1 11.98092958 -5.577301785 10.1298212 1.038067688 0.910704888 0.664692704 0.046078905 0.203117442 36.56364632 0.006782974 0.013578887 2.65E-06 5.577301785 -0.1273628 GSWSS(ph)APTSR ddPTM_HeLa_CUDC101_4h_R1 2 GSWSSAPTSR 10 0 H7BXC7;Q9H7P9-3;Q9H7P9 H7BXC7 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 0 GSWS(0.463)S(0.535)APT(0.002)SR;GSWS(0.423)S(0.492)APT(0.085)SR ; 126.66 0.0032073 112135000 11720.9 9683.6 10560 9982.2 10173 8809.8 8544.7 7584.1 10747.8 10585.5 TRUE FALSE FALSE 10346.99387 9981.940238 11130.90554 10389.31726 9422.558057 8641.767743 8874.271941 8447.443288 10304.77113 10522.53698 0.983317416 0.948624867 1.057815769 0.987339582 0.895464476 0.821262759 0.843358589 0.802795306 0.979304816 1 13.36119496 -5.574958372 2.614460291 0.99378959 0.824817662 0.887847699 0.027373638 0.061925895 0.852726057 0.00392982 0.00900295 2.66E-06 5.574958372 -0.168971928 SPS(ph)PLTGK ddPTM_HeLa_CUDC101_4h_R1 1 SPSPLTGK 8 0 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 S(0.191)PS(0.809)PLTGK 115.7 0.0089783 24230000 7150.8 6915.7 6540 6641.4 6425.3 5532.6 5396.8 4921.1 6718.9 6829.9 TRUE FALSE FALSE 6312.594064 7128.76452 6893.572182 6912.264999 5951.31842 5427.074873 5604.956384 5481.298132 6441.944098 6789.275451 0.929789064 1.050003726 1.015361983 1.018115268 0.876576369 0.799359948 0.825560316 0.807346553 0.948841175 1 12.7290419 -5.573142004 4.05470403 0.980058068 0.814596767 0.848948694 0.034869569 0.075569327 2.609097033 0.006151805 0.013017795 2.67E-06 5.573142004 -0.1654613 ESYTEEIVS(ph)EAESHVSGISR ddPTM_HeLa_CUDC101_4h_R1 4 ESYTEEIVSEAESHVSGISR 20 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR ;;; 203.53 4.69E-18 13981900 5970.7 4076.37 2859.96 2709.52 6534.3 5944.6 5954 5811.3 5205.93 5052.78 TRUE FALSE FALSE 5270.823597 4201.958128 3014.578089 2820.025937 6052.277707 5831.216659 6183.647774 6472.834902 4991.339362 5022.72584 1.049395043 0.836589187 0.600187664 0.561453288 1.204978711 1.160966544 1.231133845 1.288709579 0.993751107 1 12.29425481 -5.57264125 24.99999563 0.94174008 1.219962349 0.490453654 0.172729052 101.4429735 50963.21515 0.029682169 0.059364348 2.68E-06 5.57264125 0.278222268 LIVENLSS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 LIVENLSSR 9 0 Q13247-3;Q13247;A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80;Q08170;A0A0D9SEM4;B4DJK0;B4DUA4;Q13243;Q13243-3 Q13247-3;Q08170;B4DJK0 SRSF6;SRSF4;SRSF5 Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 4;Serine/arginine-rich splicing factor 5 1 0 LIVENLS(0.032)S(0.968)R 111.5 0.0094817 26924000 3255.7 2914.5 3330.9 3484.4 5719.1 5009.1 6318.5 5331 3381.5 3385.1 TRUE FALSE FALSE 2874.071781 3004.29229 3510.978529 3626.508893 5297.213387 4913.559763 6562.206662 5937.859491 3242.113139 3364.965275 0.854116327 0.892815243 1.043392203 1.077725503 1.574225276 1.460211135 1.950155834 1.764612413 0.963490816 1 11.7163759 -5.572342073 1.066396517 0.924461651 1.84699225 0.910547421 0.112105906 0.104419334 0.222314002 0.017808341 0.06373393 2.68E-06 5.572342073 0.922530599 GKIEVLDS(ph)PASK ddPTM_HeLa_CUDC101_4h_R1 1 GKIEVLDSPASK 12 1 Q8N5I9 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 GKIEVLDS(0.988)PAS(0.012)K 207.4 1.33E-22 54040000 2889.9 2640.6 2399 2562.6 2551.1 2249.2 2157.7 1982.2 2581.8 2617.8 TRUE FALSE FALSE 2551.150303 2721.953756 2528.697197 2667.113905 2362.910436 2206.300257 2240.923212 2207.845636 2475.377111 2602.229209 0.980371096 1.046008456 0.971742684 1.024934274 0.908033169 0.847850085 0.861155199 0.848443953 0.951252527 1 11.34553233 -5.571167626 3.712018107 0.995579624 0.855223541 0.865362342 0.025624705 0.046937528 1.345773231 0.00307209 0.006594331 2.68E-06 5.571167626 -0.140356083 EVLTPTST(ph)SDNETR ddPTM_HeLa_CUDC101_4h_R1 1 EVLTPTSTSDNETR 14 0 H7C150;H7C183;Q70CQ2-3;Q70CQ2-2;Q70CQ2 H7C150 USP34 Ubiquitin carboxyl-terminal hydrolase 34 1 0 EVLTPT(0.193)S(0.193)T(0.412)S(0.198)DNET(0.003)R 104.9 0.024485 8519400 3202.8 2321 2235 2554 2563.1 1886.2 1724.9 1768.6 2972.1 3319.4 TRUE FALSE FALSE 2827.372639 2392.507259 2355.830861 2658.163159 2374.025219 1850.223878 1791.429971 1969.930275 2849.58878 3299.656061 0.856868894 0.72507777 0.713962551 0.805587949 0.719476568 0.560732344 0.542914152 0.597010791 0.863601759 1 11.68809994 -5.571130578 0.178016993 1.094303251 0.255684283 0.767859575 0.067032707 2.208905068 0.123869708 0.132812068 0.475065443 2.68E-06 5.571130578 -0.838618968 SMSSIPPYPASSLASS(ph)SPPGSGR ddPTM_HeLa_CUDC101_4h_R1 1 SMSSIPPYPASSLASSSPPGSGR 23 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 SMSSIPPYPASSLAS(0.133)S(0.433)S(0.433)PPGSGR 191.71 1.99E-14 29607000 7906 6977.2 6308.7 6422 8567.1 8330.2 7929.4 7740.8 7761 7658.8 TRUE FALSE FALSE 6979.270665 7192.159262 6649.767405 6683.916918 7935.122101 8171.315314 8235.239614 8621.981383 7441.088295 7613.245117 0.916727435 0.944690359 0.87344717 0.87793271 1.042278553 1.073302539 1.081698998 1.132497542 0.977387196 1 12.89429581 -5.571090907 5.247153929 0.94604339 1.089408252 0.764960498 0.041186298 0.092183874 5.692015265 0.007408091 0.01522208 2.68E-06 5.571090907 0.143364862 S(ph)PPPETIK ddPTM_HeLa_CUDC101_4h_R1 2 SPPPETIK 8 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 S(1)PPPETIK;S(1)PPPETIK ; 102.06 0.016955 173283000 10872.9 9476.7 9654.1 9157.7 10044.7 8813.2 9014.2 8454.3 9207.1 9291.6 TRUE FALSE FALSE 9598.395144 9768.665894 10176.02985 9531.190589 9303.722493 8645.102894 9361.880714 9416.703339 8827.579441 9236.33315 1.039199755 1.057634641 1.101739152 1.031923647 1.007296114 0.935988639 1.013592793 1.019528333 0.955745023 1 13.1731045 -5.570195583 5.491865996 1.029763299 0.988937216 0.171599069 0.040965749 0.241485993 16.67390835 0.005606545 0.011478684 2.69E-06 5.570195583 -0.040826084 SYLLGNSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SYLLGNSSPR 10 0 P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5 P02545 LMNA Prelamin-A/C;Lamin-A/C 1 0 SYLLGNS(0.029)S(0.971)PR;SYLLGNS(0.012)S(0.988)PR ; 105.13 0.010682 140948000 7297.7 6905.5 7517 8028.9 10570.9 13414.6 17013.6 9062.2 6824.1 6366.2 TRUE FALSE FALSE 6442.274669 7118.25027 7923.391758 8356.353246 9791.105767 13158.73886 17669.82025 10093.80422 6542.80771 6328.333559 1.018004915 1.124822231 1.252050273 1.320466623 1.547185476 2.079337116 2.792175868 1.595017728 1.033891094 1 12.62760993 -5.569923896 1.345271872 1.03268968 2.255185893 0.722608642 0.28581925 0.144153639 0.508167129 0.040888042 0.124011637 2.69E-06 5.569923896 1.222496212 RFSEGTSADR ddPTM_HeLa_CUDC101_4h_R1 1 RFSEGTSADR 10 1 A0A087X2I1;P62333;H0YJX2 A0A087X2I1 PSMC6 26S protease regulatory subunit 10B 0 0 161.19 5.95E-05 1901800 615.67 243.59 410.13 411.29 452.46 474.28 594.94 320.98 522.94 636.37 FALSE FALSE TRUE 543.5020959 251.0947192 432.3028684 428.0641839 419.0829272 465.2338992 617.8870351 357.5190658 501.3841919 632.5848429 0.859176602 0.396934454 0.683391126 0.676690548 0.662492837 0.735449014 0.976765476 0.565171723 0.792595962 1 9.305115178 -7.488980226 9.338633968 0.938192497 0.68144172 0.304239863 0.144922229 0.266134771 69.82385683 0.024494955 0.027219909 3.24E-08 7.488980226 -0.256750777 TSTTGVATTQS(ph)PTPR ddPTM_HeLa_CUDC101_4h_R1 3 TSTTGVATTQSPTPR 15 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 TSTTGVAT(0.002)T(0.004)QS(0.887)PT(0.107)PR;TSTTGVATT(0.176)QS(0.778)PT(0.046)PR;TSTTGVATTQS(0.998)PT(0.002)PR ;; 224.67 1.18E-32 483473000 8968.1 8566.3 7484.9 7212.8 8518.4 7364.1 7449.3 6261.5 8456.6 8055.1 TRUE FALSE FALSE 7916.872913 8830.217549 7889.556335 7506.96916 7890.014603 7223.642062 7736.621996 6974.28385 8108.015369 8007.187907 0.98872076 1.102786353 0.985309253 0.937528786 0.985366485 0.902144691 0.966209621 0.871002895 1.012592119 1 12.96707995 -5.569095111 1.036369969 1.002501046 0.911390553 0.491117568 0.043023297 0.423948089 0.845937775 0.006908368 0.025378294 2.70E-06 5.569095111 -0.091110494 RFTDEESR ddPTM_HeLa_CUDC101_4h_R1 2 RFTDEESR 8 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;H0YF00;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 0 0 ; ; 164.68 0.00049645 10218500 2863.7 1917.64 3206 3079.2 2382 2328.55 2355.2 1681.33 3127.2 3306.5 FALSE FALSE TRUE 2528.021427 1976.720215 3379.326058 3204.783085 2206.284606 2284.136788 2446.040853 1872.725811 2998.295492 3286.832791 0.769136 0.601405773 1.028140545 0.975036848 0.67124942 0.6949355 0.744193882 0.569766073 0.912214184 1 11.68248235 -13.52287875 0.037347754 2.219885401 8.04E-10 0.331606465 0.131647029 665.6689071 1.98799068 99.16670312 34.67894393 3.00E-14 13.52287875 -2.2198854 RFVNVVPTFGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 RFVNVVPTFGKK 12 2 E9PR30;P62861 E9PR30 FAU 40S ribosomal protein S30 0 1 RFVNVVPTFGK(1)K 105.66 0.010772 6381100 3175.6 2520.4 1620.9 3156.5 2249.5 2370.1 2298.3 2223.7 1679.6 479.04 FALSE TRUE FALSE 2803.360982 2598.050537 1708.530757 3285.235714 2083.558867 2324.894291 2386.946201 2476.837019 1610.366177 476.1906488 5.887055928 5.455904149 3.587913289 6.898992498 4.375472034 4.882276242 5.012585205 5.201355856 3.381767746 1 8.89539548 -9.303584352 0.884361457 0.832469213 5.183627575 0.49896749 1.091877216 0.224174089 0.294949041 0.665600711 0.153256964 4.97E-10 9.303584352 4.351158362 ESEQES(ph)EEEILAQKK ddPTM_HeLa_CUDC101_4h_R1 2 ESEQESEEEILAQKK 15 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 ESEQES(1)EEEILAQKK;ESEQES(1)EEEILAQKK ; 114.9 0.00086403 253890000 8927.8 8339.3 7683 7788.7 7520.6 6334.2 6287.5 5096.8 8458.4 8362.6 TRUE FALSE FALSE 7881.296818 8596.223948 8098.36622 8106.356852 6965.820321 6213.385688 6530.010981 5676.99911 8109.741172 8312.858883 0.948085 1.034087559 0.974197485 0.975158723 0.837957244 0.7474427 0.785531316 0.682917777 0.975565842 1 13.02112901 -5.567967124 2.142877502 0.980785027 0.739829133 0.92498127 0.031747569 0.062552529 0.574305448 0.004975018 0.012100143 2.70E-06 5.567967124 -0.240955894 RGAAGDWGER ddPTM_HeLa_CUDC101_4h_R1 3 RGAAGDWGER 10 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 0 ;; ;; 128.51 0.002877 48363800 7892.85 7261.74 7233.55 7119.58 8159.02 7261.54 7527.7 7257.33 8274.03 6890.11 FALSE FALSE TRUE 6967.662088 7485.465602 7624.617593 7409.947246 7557.14535 7123.038223 7818.045911 8083.475112 7932.970981 6849.127319 1.017306551 1.092907936 1.113224684 1.081881954 1.103373466 1.039992088 1.141465992 1.180219718 1.158245512 1 12.74170446 -1 0.131166627 0.957878263 1.635395919 0 0.061467375 34.26838949 0.302445185 0.119192748 4.317595768 0.1 1 0.677517656 RGADDDRPSWR ddPTM_HeLa_CUDC101_4h_R1 3 RGADDDRPSWR 11 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 ;; ;; 107.55 0.0036596 88648000 1781.57 1911.06 1915.18 1913.16 2163.54 1794.88 1899.23 2205.48 2001.15 1536.1 FALSE FALSE TRUE 1572.737065 1969.937493 2018.720424 1991.186934 2003.939965 1760.645654 1972.483937 2456.542928 1918.66175 1526.963209 1.029977053 1.290101479 1.322049158 1.304017623 1.312369514 1.153037378 1.291769131 1.608776763 1.25652127 1 10.57644959 -7.25061757 3.860141444 1.012481752 1.319191116 0.347333291 0.131253685 0.101204488 3.403074552 0.017816458 0.021211803 5.62E-08 7.25061757 0.306709364 RGAEDDRGPWR ddPTM_HeLa_CUDC101_4h_R1 1 RGAEDDRGPWR 11 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 68.626 0.030064 12688000 1938.3 1513.7 1170.7 1599.3 1459.3 1410.1 1654.8 1986.5 1368.7 1100.7 FALSE FALSE TRUE 1711.095412 1560.335303 1233.991583 1664.526367 1351.650346 1383.204692 1718.62619 2212.63513 1312.281607 1094.152987 1.563853896 1.426066849 1.127805341 1.521292165 1.235339447 1.264178509 1.570736643 2.022235607 1.199358428 1 10.09559876 -11.37451839 0.349339293 5.55E-12 1.485700601 0.256761355 0.240465701 10.59514459 0.531267716 7.704858647 0.083205987 4.22E-12 11.37451839 1.485700601 KELRAS(ph)GS(ph)S(ph)QRMLQWLAT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 KELRASGSSQRMLQWLATK 19 3 D6R9T3;E7EMP6;Q96FZ2 D6R9T3 HMCES Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein 4 0 KELRAS(1)GS(1)S(1)QRMLQWLAT(1)K 42.633 0.039255 8894300 812.88 998.78 1188.3 1057.9 832.28 904.4 564.1 728.89 902.64 979.75 TRUE FALSE FALSE 717.5954386 1029.551228 1252.543092 1101.045735 770.8843625 887.1500768 585.857526 811.8638913 865.4327971 973.9224034 0.736809664 1.057118333 1.286080994 1.130527166 0.791525444 0.910904271 0.601544357 0.833602234 0.888605493 1 9.927663021 -5.565069518 24.98276419 0.938980163 0.778510004 0.256662225 0.164359376 222.7350548 131889.2555 0.028872582 0.057745203 2.72E-06 5.565069518 -0.160470158 RGAYGGGYGGYDDYNGYNDGYGFGSDR ddPTM_HeLa_CUDC101_4h_R1 2 RGAYGGGYGGYDDYNGYNDGYGFGSDR 27 1 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7 P31943 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 0 0 ; ; 214.67 1.29E-30 69323000 2658.03 2805.27 2319.99 2461.92 3207.1 2357.77 2645.5 2739.92 2714.03 2815.5 FALSE FALSE TRUE 2346.459753 2891.697044 2445.415677 2562.327739 2970.518622 2312.799466 2747.537821 3051.821418 2602.156535 2798.753281 0.838394641 1.033208988 0.873751786 0.915524693 1.061372091 0.826367755 0.981700617 1.090421738 0.9297556 1 11.4505686 -4.363433312 3.759094409 0.929833424 1.092964513 0.278946656 0.074729192 0.239967768 5.425389771 0.011102305 0.086329025 4.33E-05 4.363433312 0.163131089 RGDDWNDR ddPTM_HeLa_CUDC101_4h_R1 2 RGDDWNDR 8 1 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;A0A087X0F4 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 0 0 ; ; 134.05 0.0029279 2863100 1497.61 913.24 2005.96 1963.67 1355.49 1445.56 1284.21 729.66 2169.44 3131 FALSE FALSE TRUE 1322.062426 941.3758419 2114.408265 2043.75695 1255.498203 1417.988351 1333.74241 812.721545 2080.014765 3112.376673 0.424775843 0.302462054 0.679354875 0.656654758 0.4033889 0.455596639 0.428528597 0.261125702 0.668304316 1 11.60380096 -9.248809692 0.7019643 1.053022925 0.452448899 0.415457289 0.161344223 0.386394627 0.296313942 0.139458016 0.027828671 5.64E-10 9.248809692 -0.600574026 RGDDWNDREWDR ddPTM_HeLa_CUDC101_4h_R1 4 RGDDWNDREWDR 12 2 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 0 0 ;;; ;;; 99.343 0.0057877 103354300 7961.7 7424.45 7155.88 7206.1 8451 7773.3 7304.2 7671.7 8068.1 7969.4 FALSE FALSE TRUE 7028.441595 7653.188504 7542.748518 7499.995905 7827.586567 7625.037254 7585.925441 8545.015318 7735.529503 7921.997654 0.887205715 0.966068009 0.952127083 0.946730387 0.988082414 0.962514455 0.95757734 1.07864401 0.976461978 1 12.95164856 RGDFIHVMDNSDPNWWK ddPTM_HeLa_CUDC101_4h_R1 1 RGDFIHVMDNSDPNWWK 17 1 P62993-2;P62993 P62993-2 GRB2 Growth factor receptor-bound protein 2 0 0 63.462 0.028054 12326000 1101.2 1315.8 1275.2 1423.6 1629.9 1499.6 1418.5 1752.9 1499.2 1689.1 FALSE FALSE TRUE 972.1190053 1356.338238 1344.141169 1481.660561 1509.665524 1470.997629 1473.21202 1952.443051 1437.402341 1679.053158 0.57896857 0.807799462 0.800535208 0.882438149 0.89911717 0.876087586 0.87740642 1.162823846 0.856079115 1 10.71343219 -1 0.731644417 0.805384229 53.93466809 0.461407937 0.103047271 313.8524145 1.371317314 0.02562256 27444.97646 0.1 1 53.12928386 RGDFIPGLR ddPTM_HeLa_CUDC101_4h_R1 2 RGDFIPGLR 9 1 P08559-3;P08559;P08559-2;P08559-4 P08559-3 PDHA1 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial" 0 0 ; ; 137.05 0.0023631 12994000 6611.3 5613 4424.7 5629.5 4479 4558.9 4259.1 4763.3 3782.1 4812.6 FALSE FALSE TRUE 5836.333436 5785.929877 4663.912666 5859.095343 4148.593093 4471.946578 4423.374914 5305.534818 3626.200237 4783.974441 1.219975882 1.209439964 0.974903341 1.224733831 0.867185464 0.934776436 0.924623442 1.1090224 0.757989049 1 12.22399397 -5.755799756 24.99987724 1.111898762 0.95473023 0.055908489 0.149413074 132.37356 586792.265 0.016539696 0.032352308 1.75E-06 5.755799756 -0.157168532 RGDLPFVVPR ddPTM_HeLa_CUDC101_4h_R1 2 RGDLPFVVPR 10 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 158.08 8.54E-05 115895000 5668.1 5050 4952.9 5128.1 4850.2 4745.8 4598.4 5242.4 4318.3 3542.5 FALSE FALSE TRUE 5003.69391 5205.584514 5220.668756 5337.246084 4492.410409 4655.281772 4775.761828 5839.173625 4140.297846 3521.429052 1.420927083 1.478259092 1.482542649 1.515647768 1.275735033 1.32198653 1.356199928 1.658182953 1.17574365 1 11.7819453 -9.060728693 0.708641581 0.979078422 1.434976144 0.581486608 0.11522505 0.338012649 0.290924812 0.088648444 0.022727923 8.70E-10 9.060728693 0.455897721 ASSPSPLTIGT(ph)PESQR ddPTM_HeLa_CUDC101_4h_R1 1 ASSPSPLTIGTPESQR 16 0 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 1 0 ASSPSPLT(0.044)IGT(0.955)PES(0.001)QR 129.36 0.0023527 10131000 1288.7 1319.8 1270 1331.5 1250.9 1173.5 1013.1 1040.1 1320.4 1354.6 TRUE FALSE FALSE 1137.64054 1360.461474 1338.660042 1385.804325 1158.623599 1151.117443 1052.175606 1158.50078 1265.972553 1346.542779 0.844860302 1.010336615 0.994145944 1.029157296 0.860443216 0.854868825 0.781390404 0.860352005 0.94016512 1 10.39504435 -5.564880732 11.16718253 0.944077091 0.832189959 0.547465122 0.055687343 0.524220122 137.6408536 0.010682533 0.021384214 2.72E-06 5.564880732 -0.111887132 SLSYS(ph)PVER ddPTM_HeLa_CUDC101_4h_R1 3 SLSYSPVER 9 0 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SLS(0.242)YS(0.758)PVER;SLS(0.077)YS(0.923)PVER;S(0.012)LS(0.076)YS(0.913)PVER ;; 152.69 0.00043416 302172000 11340.7 10132.3 10209.7 10160.9 10631.3 8883.6 8728.4 8995 10933.1 11035.3 TRUE FALSE FALSE 10011.36034 10444.46415 10761.66726 10575.30542 9847.05018 8714.160131 9065.057312 10018.95444 10482.43299 10969.66154 0.912640768 0.952122735 0.981039134 0.964050293 0.897662169 0.794387329 0.826375297 0.91333305 0.955583994 1 13.42123139 -5.564600237 3.875676463 0.959229087 0.842621637 0.692590751 0.03484863 0.110501992 3.530294516 0.006180067 0.013226813 2.73E-06 5.564600237 -0.11660745 S(ph)SDELDAWTDFR ddPTM_HeLa_CUDC101_4h_R1 1 SSDELDAWTDFR 12 0 O43524-2;O43524 O43524-2 FOXO3 Forkhead box protein O3 1 0 S(0.999)S(0.001)DELDAWTDFR 237.41 4.82E-43 7799800 807.18 716.69 596.62 758.5 543.34 392.77 643.62 353.44 538.91 508.39 TRUE FALSE FALSE 712.563584 738.7703694 628.8750819 789.4349085 503.2588907 385.2785666 668.444639 393.6741809 516.6959017 505.3660737 1.409994895 1.461851929 1.244395132 1.562105075 0.995830383 0.76237521 1.322693932 0.778988146 1.022419051 1 8.981185006 -5.564495882 24.99287974 1.248983042 0.972755273 0.327027908 0.220656015 158.2934138 95061.52598 0.03451739 0.069034836 2.73E-06 5.564495882 -0.276227768 RGEAHLAVNDFELAR ddPTM_HeLa_CUDC101_4h_R1 5 RGEAHLAVNDFELAR 15 1 Q02790 Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" 0 0 ;;;; ;;;; 135.86 0.00037042 52727900 8462.07 7602.79 7409.89 7722.3 9480.16 7854.39 7815.44 8218.65 7737.75 7267.41 FALSE FALSE TRUE 7470.158982 7837.022948 7810.491067 8037.248773 8780.827484 7704.580597 8116.884139 9154.227895 7418.79667 7224.183122 1.034048951 1.084831713 1.081159065 1.112547763 1.215476869 1.066498518 1.123571205 1.267164431 1.026939177 1 12.81861875 -1 0.148524847 0.962770573 1.879425756 0.632230349 0.048276505 29.34445978 0.282745215 0.105923902 5.807317694 0.1 1 0.916655183 RGEDVETSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 RGEDVETSKK 10 2 O60869-2;O60869-3;O60869 O60869-2 EDF1 Endothelial differentiation-related factor 1 0 1 ; RGEDVETSK(1)K;RGEDVETSK(1)K 182.92 9.17E-05 7394800 2630.5 2824 3589.1 3909.5 3502.9 3524.5 3813.4 4765 2404.2 2853.9 FALSE TRUE FALSE 2322.156778 2911.004093 3783.137602 4068.946308 3244.498046 3457.276035 3960.484115 5307.428339 2305.097858 2836.924876 0.818547152 1.026112506 1.333534643 1.434280598 1.143667241 1.218670281 1.396048288 1.870838521 0.812533979 1 11.47011223 -1 0.286683209 0.903463302 7.771568569 0.724003225 0.160235456 20.77641636 0.265336494 0.076010045 73.03890908 0.1 1 6.868105268 RGEEGHDPKEPEQLR ddPTM_HeLa_CUDC101_4h_R1 4 RGEEGHDPKEPEQLR 15 2 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 ;;; ;;; 74.475 0.010099 97685500 10295.9 8884.2 10219.7 9665.7 10773.4 8923.6 8946.2 10255 10448.2 11075.5 FALSE FALSE TRUE 9089.03021 9157.911672 10772.20789 10059.90902 9978.667746 8753.397198 9291.257931 11422.38775 10017.52077 11009.62243 0.825553307 0.831809785 0.978435724 0.913737877 0.906358761 0.795067883 0.843921577 1.037491323 0.909887767 1 13.42647737 -9.514927536 1.282593714 0.999666389 0.881591269 0.042917425 0.075495871 0.47973454 1.419114731 0.048931667 0.011925343 3.06E-10 9.514927536 -0.11807512 ELVLDNS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 ELVLDNSR 8 0 P39687;H0YN26;H7BZ09 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 1 0 ELVLDNS(1)R;ELVLDNS(1)R ; 87.184 0.033046 13437400 5154.9 4264.8 4472.7 4472.3 5817.5 7061 6853.3 4439.1 4307.5 4374.3 TRUE FALSE FALSE 4550.650436 4396.193433 4714.507691 4654.699725 5388.354615 6926.323189 7117.634077 4944.429201 4129.943027 4348.281469 1.046539988 1.011018598 1.08422321 1.070468818 1.239191771 1.592887498 1.636884394 1.137099619 0.949787417 1 12.08622962 -5.564180491 2.883630167 1.028984937 1.471873196 0.684739448 0.130161369 0.099564594 1.677771467 0.017546735 0.03957177 2.73E-06 5.564180491 0.442888259 FNGTHIPGS(ph)PFK ddPTM_HeLa_CUDC101_4h_R1 1 FNGTHIPGSPFK 12 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 1 0 FNGTHIPGS(1)PFK 76.82 0.026828 10633000 3674.3 3538.2 2504.8 2955.8 3117.7 2849.1 2427.5 2579.5 2441.9 2898.2 TRUE FALSE FALSE 3243.604124 3647.207748 2640.217065 3076.3503 2887.713482 2794.758164 2521.129488 2873.139853 2341.243848 2880.961378 1.125875602 1.265968984 0.916436119 1.067820737 1.002343698 0.970078317 0.875100065 0.997285099 0.812660616 1 11.4923346 -5.563456015 1.24638729 1.069984619 0.933794647 0.039204273 0.119912893 0.505605603 1.51236856 0.014842279 0.047664162 2.73E-06 5.563456015 -0.136189972 RYGS(ph)IY(ph)TLRLDPSARTYCYK ddPTM_HeLa_CUDC101_4h_R1 1 RYGSIYTLRLDPSARTYCYK 20 3 Q8NEP7-2;Q8NEP7 Q8NEP7-2 KLHDC9 Kelch domain-containing protein 9 2 0 RY(0.059)GS(0.849)IY(0.778)T(0.312)LRLDPS(0.001)ARTYCYK 56.817 0.014782 2307100 669.66 667.1 556.06 582.89 869.82 799.83 786.42 763.65 791.01 917.4 TRUE FALSE FALSE 591.1634699 687.6525603 586.1222856 606.6627737 805.6551115 784.5745754 816.7524828 850.5808292 758.404233 911.943264 0.648245887 0.75405191 0.642717929 0.665241795 0.883448722 0.860332661 0.89561765 0.932712443 0.831635325 1 9.832800261 -5.563029575 24.99867982 0.795998402 0.89211601 0.24368644 0.104756701 310.8113969 193516.2466 0.022411863 0.044823778 2.74E-06 5.563029575 0.096117608 DGDSYDPYDFS(ph)DTEEEMPQVHTPK ddPTM_HeLa_CUDC101_4h_R1 3 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 1 0 DGDSYDPYDFS(0.876)DT(0.124)EEEMPQVHTPK;DGDSYDPY(0.002)DFS(0.756)DT(0.241)EEEMPQVHTPK;DGDSYDPYDFS(0.995)DT(0.005)EEEMPQVHTPK ;; 131.56 5.15E-09 719853000 16589.6 15383 13739.6 13655.5 15389.3 13002.4 12676.6 11589.6 15783 15085.3 TRUE FALSE FALSE 14644.99224 15856.932 14482.40434 14212.43031 14254.062 12754.40088 13165.54071 12908.91322 15132.41806 14995.57196 0.976621117 1.057440959 0.965778723 0.94777514 0.950551405 0.850544475 0.87796189 0.860848339 1.009125767 1 13.87224893 -5.561124651 1.296323668 0.993001447 0.859566217 0.819609626 0.027370845 0.140743398 0.457773606 0.00419565 0.013141735 2.75E-06 5.561124651 -0.13343523 RGEK(ac)GEVVETVEDVIVR ddPTM_HeLa_CUDC101_4h_R1 1 RGEKGEVVETVEDVIVR 17 2 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;B5MCW3;Q9H0E9 H7C128 BRD8 Bromodomain-containing protein 8 0 1 RGEK(1)GEVVETVEDVIVR 193.32 1.24E-12 983580 335.2 407.24 428.46 377.62 467.32 409.81 549 502.44 179.54 449.14 FALSE TRUE FALSE 295.9083641 419.7865817 451.6238436 393.0209758 432.8467346 401.993557 570.1751139 559.6357387 172.1392852 446.4684953 0.662775464 0.940237858 1.011546948 0.880288262 0.969489985 0.900385047 1.277078047 1.253471957 0.385557519 1 8.802414566 -4.779523674 5.72822157 0.871263359 1.268805242 0.45709307 0.181899533 0.083460854 8.613407831 0.019508771 0.064969453 1.66E-05 4.779523674 0.397541884 RGEK(ac)GEVVETVEDVIVRK ddPTM_HeLa_CUDC101_4h_R1 1 RGEKGEVVETVEDVIVRK 18 3 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;B5MCW3;Q9H0E9 H7C128 BRD8 Bromodomain-containing protein 8 0 1 RGEK(1)GEVVETVEDVIVRK 44.312 0.037263 492530 188.58 186.24 60.144 231.06 163.77 217.5 197.11 196.01 198.94 264.12 FALSE TRUE FALSE 166.4749383 191.9778337 63.39556657 240.4836255 151.6890134 213.3515499 204.7125987 218.3229861 190.739609 262.5490025 0.634071875 0.731207629 0.241461845 0.91595711 0.577755055 0.812616113 0.779711965 0.831551383 0.726491463 1 8.036442904 -9.256219937 0.963823402 1.001763145 0.685948327 0.043647991 0.195075265 0.538775487 0.889971857 0.117903409 0.031531615 5.54E-10 9.256219937 -0.315814818 VQAGPGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 VQAGPGSPR 9 0 I3L4F6;I3L0U5;Q6PK04 I3L4F6 CCDC137 Coiled-coil domain-containing protein 137 1 0 VQAGPGS(1)PR;VQAGPGS(1)PR ; 118.23 0.0061401 273590000 7256.8 5382.2 7204.4 7520 5996.4 5738.8 5035.9 4837.9 6688.3 6679 TRUE FALSE FALSE 6406.168905 5548.019203 7593.891656 7826.698104 5554.057519 5629.341951 5230.13635 5388.626981 6412.605443 6639.273011 0.964890116 0.835636551 1.143783611 1.178848662 0.836546036 0.847885294 0.787757386 0.81162907 0.96585958 1 12.69680956 -5.560310863 24.91219471 0.996752929 0.817833506 0.511563524 0.091957449 107.0444546 71240.97651 0.013667015 0.027334081 2.75E-06 5.560310863 -0.178919423 RGFGFVEFEDPRDADDAVYELDGK ddPTM_HeLa_CUDC101_4h_R1 1 RGFGFVEFEDPRDADDAVYELDGK 24 2 B4DJK0;B4DUA4;Q13243;G3V5K8;Q13243-2 B4DJK0 SRSF5 Serine/arginine-rich splicing factor 5 0 0 80.016 6.74E-05 4437300 2359 2165.1 2088.4 2058.5 3255 2563.4 2274.6 2857.9 2329.2 2198.6 FALSE FALSE TRUE 2082.481596 2231.804165 2201.305221 2142.454528 3014.885135 2514.507416 2362.332084 3183.231784 2233.18939 2185.522629 0.952852909 1.021176416 1.007221427 0.980293912 1.379480173 1.150529115 1.080900308 1.45650827 1.021810234 1 11.0937626 -5.780557036 24.99240865 0.983454662 1.245263056 0.624040746 0.101640338 109.7031676 143414.1873 0.013876776 0.025182483 1.66E-06 5.780557036 0.261808394 S(ph)VTPPEEQQEAEEPK ddPTM_HeLa_CUDC101_4h_R1 2 SVTPPEEQQEAEEPK 15 0 G8JLH2;B4DIG0;P30305-3;P30305-2;P30305;P30305-4 G8JLH2 CDC25B M-phase inducer phosphatase 2 1 0 S(0.526)VT(0.474)PPEEQQEAEEPK;S(0.979)VT(0.021)PPEEQQEAEEPK ; 185.74 8.22E-11 12269000 5443.4 5261.8 4987.1 4887.6 5555 3902.1 3698.3 1964.53 5875.3 5874.6 TRUE FALSE FALSE 4805.332904 5423.909821 5256.717711 5086.937454 5145.218717 3827.673944 3840.94467 2188.164154 5633.117647 5839.657618 0.82287922 0.928806135 0.90017567 0.871102004 0.881082258 0.655462048 0.657734566 0.374707611 0.964631493 1 12.51166807 -4.139942328 0.675954758 0.919090169 3.59E-16 0.903824451 0.05612838 0.925852502 0.261969516 0.012245847 0.676390762 7.25E-05 4.139942328 -0.919090169 down RGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDR ddPTM_HeLa_CUDC101_4h_R1 2 RGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDR 32 1 P31942;P31942-4;P31942-3;P31942-5 P31942 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 0 0 ; ; 147.69 3.14E-17 256420000 2904.6 2664.7 2865.9 2428.4 3354 3211.6 2362.8 2707.9 3224.4 2887.3 FALSE FALSE TRUE 2564.127191 2746.796249 3020.839223 2527.440648 3106.582102 3150.344081 2453.933987 3016.15639 3091.488867 2870.126211 0.893384821 0.957029777 1.052510935 0.880602616 1.082385189 1.097632595 0.854991665 1.050879358 1.077126454 1 11.48689846 -6.971460677 24.10355462 0.948367265 0.999256687 0 0.089021461 290.4652247 245317.8325 0.01305499 0.01715742 1.07E-07 6.971460677 0.050889422 GFSQYGVSGS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 1 GFSQYGVSGSPTK 13 0 Q9NXC5 Q9NXC5 MIOS WD repeat-containing protein mio 1 0 GFSQYGVS(0.117)GS(0.595)PT(0.288)K 189.09 2.91E-11 105990000 2476.3 2239.5 2075.6 2305.4 2353.4 2117 2066.7 2084.4 2138.7 2336 TRUE FALSE FALSE 2186.031868 2308.496341 2187.813214 2399.424177 2179.794371 2076.621752 2146.413311 2321.679671 2050.541881 2322.105368 0.941400807 0.994139358 0.942167933 1.033296856 0.938714668 0.894284032 0.924339326 0.999816676 0.883052901 1 11.18121772 -5.559936465 24.99906054 0.975246922 0.934388038 0.047220837 0.04590116 192.9888661 130189.3681 0.005364873 0.010729764 2.75E-06 5.559936465 -0.040858884 RGGGSGGGEESEGEEVDED ddPTM_HeLa_CUDC101_4h_R1 1 RGGGSGGGEESEGEEVDED 19 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 0 0 107.53 0.0071684 5516400 1093 1244.1 1026.5 897.05 1083.7 991.05 928.75 1047.4 1287.6 1328 FALSE FALSE TRUE 964.8801969 1282.429246 1081.995695 933.6355764 1003.75761 972.1473725 964.5721986 1166.631782 1234.524583 1320.100997 0.730913922 0.971462978 0.819630996 0.707245566 0.760364254 0.736418937 0.730680608 0.883744338 0.935174343 1 10.36643259 -9.511284707 0.77369713 1.031381635 0.784236445 0.422776008 0.080141338 0.627942702 0.525740355 0.105511892 0.015564095 3.08E-10 9.511284707 -0.24714519 SVSSNVASVS(ph)PIPAGSK ddPTM_HeLa_CUDC101_4h_R1 1 SVSSNVASVSPIPAGSK 17 0 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 SVSSNVASVS(1)PIPAGSK 262.37 3.08E-70 67380000 7380.5 6065.5 5506.8 6413.2 7099.3 5612.4 5033.6 2136.5 6742.5 6312.3 TRUE FALSE FALSE 6515.368978 6252.370866 5804.514265 6674.758016 6575.598783 5505.352821 5227.747638 2379.710524 6464.571296 6274.754159 1.038346493 0.996432802 0.925058435 1.063748132 1.047945245 0.877381437 0.833139834 0.379251595 1.030250928 1 12.61534322 -4.139826455 1.342184533 1.013206755 5.20E-21 0.939573639 0.04774341 0.271464945 0.34402297 0.006778084 0.402128124 7.25E-05 4.139826455 -1.013206755 down RGGPNYQEGLR ddPTM_HeLa_CUDC101_4h_R1 2 RGGPNYQEGLR 11 1 P53396;P53396-2;P53396-3;K7EIE7 P53396 ACLY ATP-citrate synthase 0 0 ; ; 135.99 0.001703 9307000 3455.5 2914 2674.5 3088.1 2842.8 2860.5 3033.4 3247.4 2556.2 2278.76 FALSE FALSE TRUE 3050.451528 3003.776886 2819.09156 3214.046066 2633.092308 2805.940728 3150.399254 3617.07089 2450.832354 2265.205834 1.346655338 1.326050304 1.244518938 1.418875944 1.162407525 1.238713359 1.39077836 1.59679568 1.081946866 1 11.14542644 -12.21485042 0.242108838 7.03E-11 1.38036701 0.53496368 0.112652276 13.95547257 0.319108281 6.782082172 0.077556276 6.10E-13 12.21485042 1.38036701 RGILTLK ddPTM_HeLa_CUDC101_4h_R1 4 RGILTLK 7 1 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;C9JUM1;C9JZR7;C9JTX5;Q6S8J3;A5A3E0;P0CG38;P0CG39;P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P60709;P63267;P63261 ACTB;POTEE;POTEF;POTEI;POTEJ;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;; ;;; 119.29 0.0013087 20576700 35105 18369.3 8532.9 18839.2 15646.5 17970.8 14235 13311.7 8026.6 2449.4 FALSE FALSE TRUE 30990.04512 18935.23636 8994.214385 19607.54401 14492.28887 17628.03693 14784.04872 14827.05012 7695.740151 2434.83086 12.72780201 7.77681796 3.693979131 8.052938842 5.952072116 7.23994312 6.07189968 6.08956062 3.160687782 1 11.24960584 -4.636251818 19.51125816 6.638604919 6.079639778 0 3.062155162 21.582067 3579.322355 0.596822684 2.233121748 2.31E-05 4.636251818 -0.558965141 RGLKPSCTIIPLMK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 RGLKPSCTIIPLMKK 15 3 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 1 RGLKPSCTIIPLMK(1)K 59.294 0.028142 683420 2194.3 2448.6 1993.3 2051.9 2057.4 2160.8 2298.5 2284.7 1404.1 881.24 FALSE TRUE FALSE 1937.08748 2524.038464 2101.063827 2135.585351 1905.629701 2119.58634 2387.153915 2544.781013 1346.222404 875.9983453 2.211291255 2.88132789 2.398479219 2.437887426 2.17538048 2.41962368 2.725066694 2.905006644 1.536786469 1 9.774784334 -8.804947347 0.505486291 0.831257177 2.588957187 0.755034632 0.280592633 0.321726938 0.145046218 0.267678817 0.07212113 1.57E-09 8.804947347 1.757700011 EATSDPSRT(ph)PEEEPLNLEGLVAHR ddPTM_HeLa_CUDC101_4h_R1 2 EATSDPSRTPEEEPLNLEGLVAHR 24 1 A0A087WWW7;E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0 A0A087WWW7 TNS1 Tensin-1 1 0 EAT(0.044)S(0.044)DPS(0.199)RT(0.712)PEEEPLNLEGLVAHR;EAT(0.092)S(0.092)DPS(0.347)RT(0.469)PEEEPLNLEGLVAHR ; 97.57 8.65E-06 8476300 1712.46 1399.94 1308.38 1252.75 1621.09 1561.98 1578.22 1167.6 1729.31 1450.96 TRUE FALSE FALSE 1511.728035 1443.070492 1379.11498 1303.84256 1501.50542 1532.187834 1639.092474 1300.514864 1658.02711 1442.329625 1.048115499 1.00051366 0.956171846 0.903983761 1.041027927 1.062300744 1.136420167 0.901676594 1.149547982 1 10.4941852 -5.55983627 24.99989891 1.006995692 1.045078888 0.017827502 0.080312833 375.776207 254192.5382 0.009684179 0.019368424 2.76E-06 5.55983627 0.038083196 GDDGPDIADEES(ph)RGLEGK ddPTM_HeLa_CUDC101_4h_R1 1 GDDGPDIADEESRGLEGK 18 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 GDDGPDIADEES(1)RGLEGK 63.674 0.018385 3556100 1121.5 814.68 1031.7 1001 1444.6 1613.9 1639 1395.7 689 989.35 TRUE FALSE FALSE 990.0394701 839.7793252 1087.476823 1041.825107 1338.034736 1583.117546 1702.216779 1554.580846 660.5991284 983.4653022 1.006684697 0.853898275 1.105760234 1.05934099 1.3605307 1.609734012 1.730835623 1.580717533 0.671705577 1 9.941730343 -5.559256353 1.722584985 0.996293432 1.667484917 0.867021416 0.122325551 0.049895386 0.293394248 0.00946273 0.025235771 2.76E-06 5.559256353 0.671191485 GTQGATAGAS(ph)SELDASK ddPTM_HeLa_CUDC101_4h_R1 2 GTQGATAGASSELDASK 17 0 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 1 0 GTQGAT(0.029)AGAS(0.485)S(0.485)ELDASK;GTQGAT(0.021)AGAS(0.49)S(0.49)ELDASK ; 126.8 8.41E-05 6313400 3772.9 2895.4 2924.7 3001.8 2964 2305.3 2574.5 2060.78 2958.6 2904 TRUE FALSE FALSE 3330.646381 2984.603842 3082.818129 3124.226379 2745.351625 2261.330243 2673.799327 2295.370865 2836.645256 2886.726879 1.15377953 1.033905862 1.067928577 1.082272937 0.95102576 0.783354414 0.926239107 0.795146532 0.98265107 1 11.4952189 -5.559128183 3.43756916 1.071166716 0.844694433 0.729226509 0.058921843 0.095178311 2.341507898 0.009567201 0.020938948 2.76E-06 5.559128183 -0.226472282 LMELHGEGS(ph)SSGK ddPTM_HeLa_CUDC101_4h_R1 1 LMELHGEGSSSGK 13 0 H0Y9Y4;P61247;D6R9B6;D6RAT0;D6RG13 H0Y9Y4 RPS3A 40S ribosomal protein S3a 1 0 LMELHGEGS(0.598)S(0.158)S(0.244)GK 83.54 0.016738 12341000 4394.8 3101.9 3203.8 3168.2 4707.8 4383 4243.9 4184.8 3640.6 4193 TRUE FALSE FALSE 3879.648206 3197.465862 3377.007119 3297.41289 4360.514973 4299.401578 4407.588645 4661.180716 3490.532927 4168.05985 0.930804342 0.767135305 0.810210803 0.791114573 1.046173791 1.031511478 1.057467696 1.11830945 0.83744789 1 12.02516028 -5.55725648 24.82582816 0.925489852 1.063084977 0.502234504 0.085925382 156.3665904 112919.4205 0.01456284 0.029125785 2.77E-06 5.55725648 0.137595125 SS(ph)PVPVSDTQK ddPTM_HeLa_CUDC101_4h_R1 1 SSPVPVSDTQK 11 0 Q76FK4-2;Q76FK4-4;Q76FK4;F8WE42;F5H101;F5GWN9 Q76FK4-2 NOL8 Nucleolar protein 8 1 0 S(0.041)S(0.959)PVPVSDTQK 82.494 0.035418 15021000 3606.4 2730.7 2631.2 2726.7 2585.9 2981.7 2236.1 1994 2866.5 3447.2 TRUE FALSE FALSE 3183.663259 2814.82963 2773.450631 2837.906612 2395.143309 2924.82904 2322.347126 2220.9889 2748.341657 3426.695901 0.929076682 0.821441328 0.809365847 0.828175798 0.69896582 0.853542049 0.677721979 0.648142982 0.802038388 1 11.74260245 -5.55647529 0.222598567 1.04168743 0.506082518 0.398761231 0.080814171 1.759035779 0.134140781 0.061541705 0.273405898 2.78E-06 5.55647529 -0.535604912 IQPQPPDEDGDHS(ph)DKEDEQPQVVVLK ddPTM_HeLa_CUDC101_4h_R1 4 IQPQPPDEDGDHSDKEDEQPQVVVLK 26 1 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 0 IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK ;;; 91.378 5.74E-06 691306000 10314.5 10367.5 9800.1 10327.6 10584.9 9238.2 9250.5 9728.2 10591.4 11002.4 TRUE FALSE FALSE 9105.449946 10686.91039 10329.92305 10748.80417 9804.073015 9061.996727 9607.294884 10835.61897 10154.81801 10936.95724 0.832539595 0.977137439 0.944496977 0.98279658 0.896416874 0.828566532 0.878424838 0.990734327 0.928486579 1 13.4169238 -5.555961 24.9064973 0.929997076 0.891382021 0.097171502 0.057970212 444.8039888 334876.4157 0.010838753 0.021677606 2.78E-06 5.555961 -0.038615055 LEADQS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 LEADQSPK 8 0 P49454 P49454 CENPF Centromere protein F 1 0 LEADQS(1)PK 97.452 0.021176 16394000 4982.1 3088.7 5257.7 6182.3 3587.6 3105.2 3706.4 1648.9 5861.1 5315.5 TRUE FALSE FALSE 4398.10579 3183.859186 5541.947166 6434.440916 3322.949896 3045.973484 3849.35709 1836.604111 5619.502977 5283.88317 0.832362422 0.602560481 1.048839838 1.217748521 0.628884059 0.576464957 0.728509122 0.347586056 1.063517644 1 12.36738285 -5.555266357 22.52586041 0.921760372 0.574294822 0.533087694 0.17749336 42.29808406 29418.44456 0.025478018 0.05095678 2.78E-06 5.555266357 -0.347465549 (ac)MQT(ph)PVNIPVPVLR ddPTM_HeLa_CUDC101_4h_R1 1 MQTPVNIPVPVLR 13 0 Q9H840 Q9H840 GEMIN7 Gem-associated protein 7 1 0 MQT(1)PVNIPVPVLR 63.283 0.02653 1785500 256.23 295.14 200.41 199.6 325.47 326.92 324.28 233.09 429.13 292.63 TRUE FALSE FALSE 226.1951078 304.2329136 211.2447708 207.7405507 301.4607265 320.6845457 336.7875882 259.6240234 411.4410798 290.8894237 0.777598253 1.045871347 0.726202995 0.714156424 1.03634131 1.102427656 1.157785608 0.89251792 1.414424335 1 8.184327033 -5.554400176 24.4641977 0.879560599 1.062895716 0 0.20715043 141.9768257 110189.6254 0.019109673 0.038219661 2.79E-06 5.554400176 0.183335117 RGAS(ph)S(ph)S(ph)PQRRQSPS(ph)PS(ph)TR ddPTM_HeLa_CUDC101_4h_R1 1 RGASSSPQRRQSPSPSTR 18 3 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 5 0 RGAS(0.999)S(0.999)S(0.999)PQRRQS(0.197)PS(0.843)PS(0.827)T(0.134)R 46.818 0.028173 29360000 3208.7 2714.3 2130.3 2640.8 2448.9 2362.7 1964.2 1850.1 2835.9 2956 TRUE FALSE FALSE 2832.58105 2797.924366 2245.470462 2748.503239 2268.249526 2317.635434 2039.959852 2060.707906 2719.003002 2938.417581 0.963981794 0.952187458 0.764176772 0.935368498 0.771928926 0.7887359 0.69423756 0.701298522 0.925329 1 11.52082372 -5.553747761 0.380316469 1.003799097 0.609145531 0.731963161 0.05729759 0.691261328 0.134936748 0.017613995 0.109924191 2.79E-06 5.553747761 -0.394653566 RGPGLYYVDSEGNR ddPTM_HeLa_CUDC101_4h_R1 2 RGPGLYYVDSEGNR 14 1 P28074-3;P28074 P28074-3 PSMB5 Proteasome subunit beta type-5 0 0 ; ; 156.2 7.53E-05 20980300 5635.4 4793 4416.1 4890.4 5150 5055.1 4130.2 4887 5259.4 4585.8 FALSE FALSE TRUE 4974.826955 4940.666649 4654.847724 5089.85165 4770.09476 4958.68239 4289.503198 5443.316326 5042.605306 4558.523458 1.091324198 1.083830476 1.021130585 1.116557082 1.046412244 1.087782576 0.94098522 1.194096373 1.106192686 1 12.15435088 -9.398864887 1.083239431 0.999346338 1.06994295 0 0.069808756 0.731656199 1.513178614 0.039720369 0.009755218 3.99E-10 9.398864887 0.070596612 S(ph)YDVPPPPMEPDHPFYSNISK ddPTM_HeLa_CUDC101_4h_R1 9 SYDVPPPPMEPDHPFYSNISK 21 0 P18669;Q8N0Y7 P18669 PGAM1;PGAM4 Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4 1 0 S(1)YDVPPPPMEPDHPFYSNISK;S(0.955)Y(0.045)DVPPPPMEPDHPFYSNISK;S(0.999)Y(0.001)DVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(0.98)Y(0.02)DVPPPPMEPDHPFYSNISK;S(1)YDVPPPPMEPDHPFYSNISK;S(0.932)Y(0.062)DVPPPPMEPDHPFY(0.004)S(0.002)NISK;S(0.955)Y(0.045)DVPPPPMEPDHPFYSNISK;S(0.927)Y(0.073)DVPPPPMEPDHPFYSNISK ;;;;;;;; 156.36 4.83E-07 972217000 45408.6 36558.4 32507.7 32715.6 42291.7 41018.5 36620.6 36083 38836.6 37541.3 TRUE FALSE FALSE 40085.87274 37684.72097 34265.16459 34049.88358 39171.92555 40236.14045 38033.06881 40190.54287 37235.73891 37318.00268 1.074169834 1.009826847 0.918193958 0.912425134 1.049679049 1.078196516 1.019161426 1.07697465 0.997795601 1 15.18758415 -5.552935179 24.99987191 1.014930404 1.055836426 0.205258373 0.051194725 391.5007507 325635.4986 0.008971868 0.017943845 2.80E-06 5.552935179 0.040906022 RGPWWDDWER ddPTM_HeLa_CUDC101_4h_R1 1 RGPWWDDWER 10 1 H0YIQ2;P49750-3;P49750-1;P49750 H0YIQ2 YLPM1 YLP motif-containing protein 1 0 0 96.113 0.021404 7515400 2351 1979.4 1879.8 1767.4 1492.9 1682.7 1405.2 1400 1510.3 1872.8 FALSE FALSE TRUE 2075.419344 2040.382968 1981.427674 1839.482211 1382.771741 1650.605301 1459.399035 1559.370341 1448.044795 1861.660502 1.114821602 1.096001642 1.064333519 0.988086823 0.742762571 0.886630671 0.783923295 0.837623369 0.77782431 1 10.86237429 -5.920037234 4.650061464 1.058991486 0.816891034 0.441310416 0.099722092 0.064573163 2.581131956 0.008164808 0.015059452 1.20E-06 5.920037234 -0.242100452 EQTLSPT(ph)ITSGLHNIAR ddPTM_HeLa_CUDC101_4h_R1 2 EQTLSPTITSGLHNIAR 17 0 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;H7BXG7;O94979-7;O94979-6;O94979-10;O94979-4;H0Y8W8 D6REX3 SEC31A Protein transport protein Sec31A 1 0 EQTLS(0.022)PT(0.527)IT(0.437)S(0.013)GLHNIAR;EQT(0.144)LS(0.035)PT(0.653)IT(0.168)S(0.001)GLHNIAR ; 138.2 0.0010294 26059400 3258 2384.7 2385 2057.87 3635.1 3269.9 3541.1 3217.8 3575.6 2955.31 TRUE FALSE FALSE 2876.102179 2458.16978 2513.940314 2141.798833 3366.945915 3207.532106 3677.681413 3584.101345 3428.212255 2937.731685 0.979021397 0.836757759 0.855741975 0.729065505 1.146103959 1.091839708 1.251877914 1.220023382 1.166958941 1 11.52048692 -5.552617977 24.964029 0.949094951 1.181753791 0.522583122 0.116260703 117.206659 98386.53857 0.015392239 0.030784773 2.80E-06 5.552617977 0.23265884 NLS(ph)FEIK ddPTM_HeLa_CUDC101_4h_R1 3 NLSFEIK 7 0 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 NLS(1)FEIK;NLS(1)FEIK;NLS(1)FEIK ;; 104.43 0.016772 407585000 17633.1 16804.9 15671.7 15338.7 20266 19833.9 19202.2 17539.5 19098 19629.3 TRUE FALSE FALSE 15566.17475 17322.63905 16518.95951 15964.27849 18771.01756 19455.6014 19942.83529 19536.12578 18310.77236 19512.54405 0.79775219 0.887769376 0.846581536 0.818154642 0.961997447 0.997081741 1.022052031 1.001208542 0.938410302 1 14.25211427 -5.552007182 7.108612595 0.890508597 1.003841716 0.514222893 0.055187052 0.171634903 30.02621454 0.011756217 0.023861595 2.81E-06 5.552007182 0.113333119 INHTVILDDPFDDPPDLLIPDRS(ph)PEPTREQLDSGR ddPTM_HeLa_CUDC101_4h_R1 5 INHTVILDDPFDDPPDLLIPDRSPEPTREQLDSGR 35 2 Q8WUA2 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 1 0 INHTVILDDPFDDPPDLLIPDRS(0.855)PEPT(0.073)REQLDS(0.073)GR;INHTVILDDPFDDPPDLLIPDRS(0.963)PEPT(0.034)REQLDS(0.003)GR;INHTVILDDPFDDPPDLLIPDRS(0.781)PEPT(0.164)REQLDS(0.055)GR;INHTVILDDPFDDPPDLLIPDRS(0.982)PEPT(0.016)REQLDS(0.002)GR;INHTVILDDPFDDPPDLLIPDRS(0.986)PEPT(0.014)REQLDSGR ;;;; 99.319 6.87E-13 75955700 2738.32 2932.22 2477.62 2822.45 3581.29 3024.24 3338.14 3215.81 2948.75 2289.28 TRUE FALSE FALSE 2417.338281 3022.558223 2611.567632 2937.561711 3317.105372 2966.557661 3466.893178 3581.884812 2827.201277 2275.663261 1.062256584 1.32820979 1.147607239 1.290859575 1.457643329 1.303601333 1.523464933 1.573995974 1.242363633 1 11.15207138 -5.55131209 0.31783772 0.974895456 1.737164035 0.619029116 0.110986447 0.835400636 0.114844995 0.039361742 0.229517205 2.81E-06 5.55131209 0.76226858 FDLS(ph)HGSPQMVR ddPTM_HeLa_CUDC101_4h_R1 1 FDLSHGSPQMVR 12 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 FDLS(0.655)HGS(0.345)PQMVR 88.282 0.015227 51065000 8135 7573.7 7158 7673.7 7674.5 6899.1 6715.5 5931.6 7150.7 7869.7 TRUE FALSE FALSE 7181.427632 7807.03672 7544.983132 7986.666655 7108.367425 6767.511162 6974.519085 6606.829368 6855.945119 7822.890674 0.918001789 0.997973389 0.964475083 1.020935481 0.908662503 0.865090852 0.891552672 0.844550901 0.876395364 1 12.93348609 -5.551096857 6.454400211 0.967472446 0.872057082 0.525861374 0.04098541 0.088678501 12.11633453 0.005342419 0.010910724 2.81E-06 5.551096857 -0.095415365 STS(ph)PTFNK ddPTM_HeLa_CUDC101_4h_R1 2 STSPTFNK 8 0 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 S(0.009)T(0.009)S(0.973)PT(0.009)FNK;S(0.165)T(0.321)S(0.514)PTFNK ; 130.66 0.0054484 101972000 20039.5 17409.1 16684 16325.9 17997.4 15667.3 15607.8 13826.1 18088.7 16966.2 TRUE FALSE FALSE 17690.50019 17945.45374 17585.98751 16991.74077 16669.76766 15368.47236 16209.79807 15400.00734 17343.07613 16865.28429 1.048929854 1.064046916 1.042732942 1.007498034 0.988407155 0.911248936 0.961133996 0.913118752 1.028329901 1 14.04176902 -5.550724069 2.200994569 1.028290576 0.931284587 0.813606178 0.022069867 0.123360768 1.192146281 0.003998621 0.009746447 2.81E-06 5.550724069 -0.097005989 PYQYPALT(ph)PEQK ddPTM_HeLa_CUDC101_4h_R1 1 PYQYPALTPEQK 12 0 P04075;H3BQN4;J3KPS3;H3BUH7;H3BR04;H3BMQ8 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 PYQYPALT(1)PEQK 123.95 0.01306 25730000 6609 5390.4 5244.3 5902.8 5907.3 5032.3 5284.8 5283.4 5206.9 5826.5 TRUE FALSE FALSE 5834.303039 5556.471835 5527.822721 6143.541698 5471.530248 4936.317262 5488.636506 5884.8409 4992.269378 5791.843719 1.007330881 0.959361493 0.954415034 1.060722975 0.944695768 0.852287717 0.947649276 1.016056576 0.861948219 1 12.49980696 -5.549491301 24.81418924 0.999493006 0.932717777 0 0.063252848 171.9507945 160330.5833 0.006480313 0.012960927 2.82E-06 5.549491301 -0.066775229 S(ph)TPPYLFPEYPEASK ddPTM_HeLa_CUDC101_4h_R1 1 STPPYLFPEYPEASK 15 0 Q8TE76-2;Q8TE76-3;Q8TE76 Q8TE76-2 MORC4 MORC family CW-type zinc finger protein 4 1 0 S(0.5)T(0.5)PPYLFPEYPEASK 107.18 0.0030897 5451100 1386.1 1072.8 1320.2 1115.2 1129.7 761.86 873.94 1016.8 1328 1077.7 TRUE FALSE FALSE 1223.623459 1105.851696 1391.574005 1160.682676 1046.364282 747.3287898 907.6481585 1132.548402 1273.259278 1071.289792 1.142196507 1.032261956 1.298970657 1.083444167 0.976733176 0.697597228 0.847248023 1.057182109 1.188529273 1 10.06513308 -5.549397688 4.601867439 1.085221474 0.860494534 0.480640262 0.116479346 0.140010903 7.209639471 0.017050251 0.035996635 2.82E-06 5.549397688 -0.22472694 HSAGS(ph)GAEESNSSSTVQK ddPTM_HeLa_CUDC101_4h_R1 2 HSAGSGAEESNSSSTVQK 18 0 Q8IYL3 Q8IYL3 C1orf174 UPF0688 protein C1orf174 1 0 HS(0.177)AGS(0.823)GAEESNSSSTVQK;HS(0.375)AGS(0.625)GAEESNSSSTVQK ; 188.27 1.41E-11 23712000 13981.3 9429.9 9367.5 8397.4 15514 14348.2 15291.2 13402.1 13517.4 13185.8 TRUE FALSE FALSE 12342.43321 9720.424042 9873.935385 8739.882269 14369.56313 14074.53199 15880.98671 14927.74089 12960.20705 13107.37028 0.941640691 0.741599866 0.7533117 0.666791438 1.096296422 1.073787624 1.211607391 1.138881452 0.988772483 1 13.67809065 -5.548576155 24.9917711 0.913852789 1.137876859 0.54297525 0.118251817 176.0462119 171211.5399 0.020182982 0.040367006 2.83E-06 5.548576155 0.22402407 ISINQT(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 4 ISINQTPGK 9 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;H0YDG6 E9PMS6 LMO7 LIM domain only protein 7 1 0 ISINQT(1)PGK;IS(0.001)INQT(0.999)PGK;ISINQT(1)PGK;ISINQT(1)PGK ;;; 168.22 5.17E-06 659260000 32746.7 27853.8 26606.2 26136.5 27465.8 25114.9 23728.1 21071.4 28297.4 25472.2 TRUE FALSE FALSE 28908.18147 28711.94256 28044.61165 27202.45944 25439.70265 24635.87513 24643.30077 23470.083 27130.96919 25320.69022 1.141682206 1.133932066 1.107576903 1.074317454 1.004700205 0.972954328 0.973247591 0.92691324 1.071494061 1 14.62802911 -5.547878809 2.125035948 1.078237573 0.95705074 0.691111664 0.039487475 0.227458006 2.045803968 0.008991611 0.022212288 2.83E-06 5.547878809 -0.121186833 SVSSS(ph)SYRR ddPTM_HeLa_CUDC101_4h_R1 2 SVSSSSYRR 9 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SVSSS(0.5)S(0.5)YRR;SVSS(0.004)S(0.859)S(0.138)YRR ; 111.27 0.0051167 41371100 2876.54 1204.27 3377.92 3617.82 2288.13 1762.25 2464.41 1315.96 2391.04 2870.79 TRUE FALSE FALSE 2539.356342 1241.372131 3560.540573 3765.370337 2119.339208 1728.638017 2559.463119 1465.763567 2292.480319 2853.714413 0.889842491 0.435002229 1.247686368 1.319462915 0.742659882 0.605750179 0.896888318 0.513633586 0.803332074 1 11.47862525 -5.547550553 24.97133755 0.955368632 0.691175973 0.214865021 0.244812721 259.1270033 262272.1344 0.034707152 0.06941648 2.83E-06 5.547550553 -0.264192659 SGT(ph)FDLLEMDR ddPTM_HeLa_CUDC101_4h_R1 3 SGTFDLLEMDR 11 0 H0YA31;H0YA26;E9PHT6;Q9NVE7 H0YA31 PANK4 Pantothenate kinase 4 1 0 S(0.028)GT(0.972)FDLLEMDR;S(0.022)GT(0.978)FDLLEMDR;S(0.024)GT(0.976)FDLLEMDR ;; 201.38 7.71E-16 26914700 3967.34 3755.16 3134.95 3210.24 4766.54 5487 5056.7 3668.46 3645.35 4100.61 TRUE FALSE FALSE 3502.294419 3870.852029 3304.43488 3341.167463 4414.92184 5382.344617 5251.738613 4086.062658 3495.08713 4076.219389 0.859201649 0.949618178 0.810661685 0.81967312 1.083092302 1.320425645 1.28838468 1.002414803 0.857433518 1 11.99301599 -5.546698132 5.4134432 0.916496791 1.211721267 0.680047001 0.098590072 0.083389496 7.050856181 0.014965603 0.031103517 2.84E-06 5.546698132 0.295224475 SWSYNGYYS(ph)DLSTAR ddPTM_HeLa_CUDC101_4h_R1 1 SWSYNGYYSDLSTAR 15 0 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 SWSYNGYYS(1)DLSTAR 213.02 1.01E-23 5802400 913.21 560.6 738.11 801.01 604.9 567.66 531.05 377.76 838.91 575.14 TRUE FALSE FALSE 806.1649081 577.8714215 778.0144593 833.6786501 560.2777321 556.8328313 551.5327764 420.7626714 804.3297747 571.7190417 1.410071817 1.010761195 1.360833561 1.458196403 0.979987881 0.973962367 0.964691984 0.735960569 1.406861966 1 9.159162531 -5.546170524 22.98082533 1.213609034 0.911873847 0.511302637 0.167871573 75.66297718 74652.47841 0.027967435 0.055939344 2.84E-06 5.546170524 -0.301735188 HSTS(ph)PASSEYSWK ddPTM_HeLa_CUDC101_4h_R1 1 HSTSPASSEYSWK 13 0 Q96N46 Q96N46 TTC14 Tetratricopeptide repeat protein 14 1 0 HST(0.01)S(0.99)PASSEYSWK 150.9 2.81E-07 0 1222.5 579.11 583.13 498.86 1249.2 1201.9 1237.9 1102.1 961.69 967.86 TRUE FALSE FALSE 1079.200403 596.9516927 614.6557717 519.2056671 1157.049005 1178.97576 1285.646218 1227.558609 922.0487312 962.1031257 1.121709695 0.620465392 0.638866828 0.53965698 1.202624723 1.225415164 1.336287331 1.275911673 0.958367878 1 9.910047731 -5.544933268 24.99965968 0.951787099 1.273097672 0.470153686 0.203730302 231.7323913 262676.9316 0.035873608 0.071750998 2.85E-06 5.544933268 0.321310572 YS(ph)PSQNS(ph)PIHHIPSRR ddPTM_HeLa_CUDC101_4h_R1 1 YSPSQNSPIHHIPSRR 16 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;H0YF00;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 Y(0.014)S(0.913)PS(0.085)QNS(0.987)PIHHIPSRR 89.557 0.0071991 113030000 2982.4 2161.8 2363.7 1888.9 2986.2 3117.1 2698.2 2495.2 3233.6 2238.2 TRUE FALSE FALSE 2632.807593 2228.402496 2491.488772 1965.937507 2765.913975 3057.646511 2802.270478 2779.243482 3100.309639 2224.887087 1.183344363 1.001580039 1.119827063 0.88361226 1.243170492 1.374292893 1.259511323 1.249161586 1.393468306 1 11.11951641 -5.544337859 24.72977481 1.071268895 1.293822698 0.314867713 0.131730562 113.4933801 130790.9391 0.013670136 0.027342135 2.86E-06 5.544337859 0.222553803 TTSVSLTIGSS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 2 TTSVSLTIGSSSPK 14 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;D6R9Z5;D6RBH5;D6RBB1;H0Y952;Q8WX93-6 Q8WX93-3 PALLD Palladin 1 0 TTSVSLTIGS(0.003)S(0.923)S(0.074)PK;TTSVSLTIGS(0.035)S(0.483)S(0.483)PK ; 250.81 4.12E-56 70593000 7310.8 8008 6958.5 6336 7200.9 6274.2 6048.8 5164.5 7600.3 7623.2 TRUE FALSE FALSE 6453.839106 8254.716988 7334.697558 6594.409467 6669.703953 6154.530089 6282.104242 5752.405804 7287.012417 7577.856867 0.851670759 1.089320785 0.967911863 0.870220906 0.880157025 0.812172913 0.829008036 0.759107213 0.961619168 1 12.88757417 -5.543254705 1.28955715 0.943768616 0.793206896 0.570668048 0.06230823 0.358812401 1.149934967 0.011906837 0.03803755 2.86E-06 5.543254705 -0.15056172 S(ph)LYESFVSSSDR ddPTM_HeLa_CUDC101_4h_R1 3 SLYESFVSSSDR 12 0 P18615;P18615-3;A0A0A0MT02;A2ABK4 P18615 NELFE Negative elongation factor E 1 0 S(0.982)LY(0.001)ES(0.016)FVSSSDR;S(1)LYESFVSSSDR;S(1)LYESFVSSSDR ;; 142.12 0.0011823 37116100 3609.8 3414.5 2870.99 3349.08 4474.1 4374.9 4725.5 3741.4 3919.9 4014.04 TRUE FALSE FALSE 3186.664716 3519.696698 3026.204404 3485.669958 4144.054557 4291.456072 4907.764118 4167.305853 3758.320063 3990.164312 0.798629948 0.882093173 0.758415987 0.873565519 1.038567395 1.07550861 1.229965419 1.044394548 0.941896065 1 11.96223244 -5.542385689 2.514833188 0.886655948 1.128201815 0.663372553 0.078160435 0.163968775 2.076773519 0.014376062 0.033891819 2.87E-06 5.542385689 0.241545866 LYPPGDEEEAELADSSGLYHEGSPSPGS(ph)PWK ddPTM_HeLa_CUDC101_4h_R1 1 LYPPGDEEEAELADSSGLYHEGSPSPGSPWK 31 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 LYPPGDEEEAELADS(0.022)S(0.022)GLY(0.079)HEGS(0.072)PS(0.241)PGS(0.564)PWK 47.506 0.017983 12354000 2311.7 1723.8 1005.1 1240.6 2533.3 2515.4 2160 2474.5 2631.3 2417.4 TRUE FALSE FALSE 2040.72603 1776.908235 1059.438746 1291.19703 2346.423506 2467.422936 2243.311924 2756.187078 2522.8367 2403.021197 0.84923347 0.739447591 0.44087782 0.537322364 0.976447278 1.026800321 0.933538134 1.146967443 1.04986036 1 11.23063366 -5.541789008 24.96486499 0.84266482 1.021558764 0.254406827 0.188825461 368.8328441 486922.8365 0.031454557 0.062916938 2.87E-06 5.541789008 0.178893944 GTEPSPGGTPQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_HeLa_CUDC101_4h_R1 1 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 1 0 GTEPS(0.004)PGGT(0.003)PQPS(0.01)RPVS(0.983)PAGPPEGVPEEAQPPR 83.022 7.74E-09 15830000 760.98 734.68 628.36 660.6 636.35 592.98 514.59 542.84 700.06 565.97 TRUE FALSE FALSE 671.779078 757.31462 662.3310423 687.5421234 589.4077283 581.6698945 534.4379087 604.6347114 671.2032305 562.6035853 1.194054029 1.346089218 1.177260614 1.222072062 1.047643036 1.03388942 0.949936905 1.074708244 1.193030489 1 9.135974936 -5.541616351 23.233787 1.130446094 1.017256061 0.324541153 0.094961636 144.4905264 179161.0768 0.017421154 0.034849052 2.87E-06 5.541616351 -0.113190034 MREDYDS(ph)VEQDGDEPGPQR ddPTM_HeLa_CUDC101_4h_R1 3 MREDYDSVEQDGDEPGPQR 19 1 Q9Y5S9;Q9Y5S9-2 Q9Y5S9 RBM8A RNA-binding protein 8A 1 0 MREDYDS(1)VEQDGDEPGPQR;MREDYDS(1)VEQDGDEPGPQR;MREDYDS(1)VEQDGDEPGPQR ;; 149.67 2.32E-05 132127000 2789.37 2697.77 2248.93 2526.18 2610.63 2328.36 2219.51 2156.08 2561.17 2586.88 TRUE FALSE FALSE 2462.404277 2780.885096 2370.513958 2629.208539 2418.049026 2283.950412 2305.117244 2401.519432 2455.597489 2571.493123 0.957577625 1.081428168 0.921843398 1.022444321 0.940328794 0.888180642 0.896411981 0.93390078 0.954930607 1 11.32839058 -5.541613901 5.897300132 0.985742243 0.906326199 0.445832028 0.042111209 0.109495133 12.9157642 0.005667955 0.011740524 2.87E-06 5.541613901 -0.079416043 ISLEQPPNGS(ph)DTPNPEK ddPTM_HeLa_CUDC101_4h_R1 1 ISLEQPPNGSDTPNPEK 17 0 Q9UHI6;E9PJ60 Q9UHI6 DDX20 Probable ATP-dependent RNA helicase DDX20 1 0 ISLEQPPNGS(0.586)DT(0.414)PNPEK 70.622 0.024722 24642000 3649.4 2291.8 2646.7 2422.4 2247 1924 1703.5 1357.3 2163.6 2398.6 TRUE FALSE FALSE 3221.622864 2362.407642 2789.788608 2521.195943 2081.243287 1887.302906 1769.204566 1511.809546 2074.415492 2384.333021 1.351163129 0.990804397 1.170049898 1.057400925 0.872882801 0.791543333 0.742012358 0.634059728 0.870019194 1 11.21937004 -5.54159599 1.082965243 1.158963715 0.673808508 0.557838134 0.133908816 0.25128201 0.549576854 0.022490306 0.08201481 2.87E-06 5.54159599 -0.485155207 DGPSS(ph)APAT(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 1 DGPSSAPATPTK 12 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 2 0 DGPS(0.006)S(0.994)APAT(0.99)PT(0.01)K 102.33 0.035778 8121400 8976.3 7228.2 7333.9 6839.1 6365.3 6191 5692 4235.5 7433.8 7743.7 TRUE FALSE FALSE 7924.111721 7450.892274 7730.392818 7118.028059 5895.7445 6072.91699 5911.542347 4717.6522 7127.375618 7697.640128 1.029420912 0.967945 1.0042549 0.924702628 0.765915839 0.788932308 0.767968137 0.612869934 0.925916969 1 12.91020051 -5.541585811 0.791691242 1.01588856 0.662195883 0.850550971 0.050287512 0.160855206 0.169989498 0.007231172 0.034309113 2.87E-06 5.541585811 -0.353692677 SSLS(ph)PTMRPGTGAER ddPTM_HeLa_CUDC101_4h_R1 1 SSLSPTMRPGTGAER 15 1 O75400-2;H7BXZ7;H7C2N3;O75400-5 O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 SSLS(0.936)PT(0.063)MRPGTGAER 123.72 0.0041973 8741600 2123.4 2093 2164.3 2271.5 1936.6 1816 1656.5 1480.4 2281.1 1915.2 TRUE FALSE FALSE 1874.498271 2157.482849 2281.308605 2364.141588 1793.740876 1781.362826 1720.39176 1648.922752 2187.072093 1903.808305 0.984604524 1.133245844 1.198286928 1.241796026 0.942185656 0.935683924 0.903658081 0.866118058 1.148787977 1 10.89467251 -5.541076725 24.99473432 1.039167646 0.908158903 0.41076537 0.097108746 259.556781 356497.6531 0.015931402 0.031867149 2.88E-06 5.541076725 -0.131008743 SYELPDGQVIT(ph)IGNER ddPTM_HeLa_CUDC101_4h_R1 2 SYELPDGQVITIGNER 16 0 P60709;A0A2R8Y793;P63267-2;Q6S8J3;A5A3E0;Q562R1;A0A2R8YEA7;Q9BYX7;P63267;P68133;P68032;P62736;P63261 P60709;P63267;P63261 ACTB;ACTG2;POTEE;POTEF;ACTBL2;POTEKP;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Beta-actin-like protein 2;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 SYELPDGQVIT(1)IGNER;SYELPDGQVIT(1)IGNER ; 140.75 7.99E-05 23581000 3800.3 3910.9 3062.8 3513.9 3560 3221.7 3313.3 2821.2 3081.9 3320.1 TRUE FALSE FALSE 3354.834595 4031.390193 3228.384232 3657.21203 3297.385893 3160.25144 3441.095091 3142.354004 2954.862778 3300.351898 1.016508148 1.221503136 0.978193942 1.108127904 0.999101306 0.957549843 1.042644905 0.952126956 0.89531749 1 11.68840414 -5.541059407 24.91978616 1.030550956 0.988021726 0.074313967 0.08357122 504.998153 692186.4627 0.010485495 0.020973975 2.88E-06 5.541059407 -0.04252923 (ac)MS(ph)SSMWY(ph)IMQSIQS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 MSSSMWYIMQSIQSK 15 0 F8VS92;F5H023;F5H243;F5GYF0;F5H5S9;F5H772;F5H7B4;F5H6A7;F5GZZ3;Q9H765 F8VS92 ASB8 Ankyrin repeat and SOCS box protein 8 3 0 MS(0.773)S(0.246)S(0.255)MWY(0.726)IMQS(0.209)IQS(0.791)K 43.12 0.0028085 0 1403.8 1223.2 837.41 883.61 1337.5 1442.6 1150.1 1093.1 1172 1093.6 TRUE FALSE FALSE 1239.248692 1260.885342 882.6829176 919.6474351 1238.83529 1415.084809 1194.459742 1217.534086 1123.689664 1087.095219 1.139963336 1.159866515 0.811964677 0.845967694 1.139583054 1.301711924 1.09876276 1.119988447 1.033662594 1 10.0862626 -5.541021398 24.99843282 1.038602369 1.17512066 0.292150242 0.118263174 299.4510736 412607.42 0.019123363 0.038251913 2.88E-06 5.541021398 0.136518291 VGVSSKPDSS(ph)PVLSPGNK ddPTM_HeLa_CUDC101_4h_R1 2 VGVSSKPDSSPVLSPGNK 18 1 Q8N4C8;Q8N4C8-4;Q8N4C8-2;Q8N4C8-3;Q8N4C8-5 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 VGVSSKPDS(0.17)S(0.593)PVLS(0.238)PGNK;VGVSSKPDS(0.047)S(0.952)PVLS(0.001)PGNK ; 141.79 4.93E-05 285120000 8401.2 7926 7154.6 7820.9 7915.4 7459.1 6344.3 6942.6 7330.1 7927.6 TRUE FALSE FALSE 7416.424071 8170.190665 7541.399317 8139.870107 7331.496712 7316.830095 6589.001776 7732.917521 7027.950175 7880.446283 0.941117267 1.036767509 0.956976172 1.032919941 0.930340294 0.928479154 0.836120385 0.981279136 0.891821342 1 12.94406162 -5.540567294 22.98455214 0.979542133 0.911047969 0.228344057 0.052032196 76.66194502 99614.33111 0.006291181 0.012585642 2.88E-06 5.540567294 -0.068494163 IGEDAEVLMSLYDPVES(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 IGEDAEVLMSLYDPVESK 18 0 A0A096LNH6;Q14185 A0A096LNH6 DOCK1 Dedicator of cytokinesis protein 1 1 0 IGEDAEVLMS(0.114)LYDPVES(0.886)K 76.341 0.012996 11207000 1030.1 897.94 833.5 643.77 1069 1032.9 944.53 1038 786.17 854.37 TRUE FALSE FALSE 909.3532395 925.6044671 878.5615312 670.0257232 990.1419997 1013.199153 980.9608385 1156.161724 753.7637398 849.2881692 1.070724016 1.089859132 1.034468115 0.788926241 1.165849279 1.192998078 1.15503886 1.361330307 0.887524126 1 9.730110343 -5.539817804 24.99891636 1.0218379 1.220165726 0.553950571 0.102395418 144.1127754 212683.2269 0.013356213 0.026717098 2.89E-06 5.539817804 0.198327826 VDIDT(ph)PDIDIHGPEGK ddPTM_HeLa_CUDC101_4h_R1 4 VDIDTPDIDIHGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK;VDIDT(1)PDIDIHGPEGK ;;; 142.23 0.00042215 388336400 23021.3 12695 13760.1 15207.9 13546.2 12216.1 9500.5 8228.7 13209.2 15504.3 TRUE FALSE FALSE 20322.77811 13086.1179 14504.01263 15828.1439 12546.92381 11983.09825 9866.937467 9165.421946 12664.71119 15412.07973 1.318626588 0.849081897 0.94108082 1.026995978 0.814096736 0.777513383 0.640208047 0.594690795 0.821739272 1 13.91177393 -5.539430963 0.653159379 1.135558592 0.555702002 0.407442116 0.152058884 0.514279186 0.341425741 0.029830864 0.164507477 2.89E-06 5.539430963 -0.57985659 AREES(ph)WGPPR ddPTM_HeLa_CUDC101_4h_R1 2 AREESWGPPR 10 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 AREES(1)WGPPR;AREES(1)WGPPR ; 93.348 0.013182 11666100 3258.3 2365.4 2616.2 2617.3 2623.9 2159.05 2495.7 1837.13 2717.6 2933.5 TRUE FALSE FALSE 2876.367013 2438.27517 2757.639686 2724.044807 2430.340125 2117.869718 2591.959985 2046.261453 2605.579378 2916.051412 0.98639105 0.836156441 0.945675949 0.934155275 0.83343528 0.726279965 0.888859495 0.70172338 0.893529986 1 11.50980044 -5.538899653 0.370709224 1.007868675 0.689169265 0.471125315 0.069920906 1.105184856 0.203256716 0.022187099 0.139777786 2.89E-06 5.538899653 -0.31869941 RKS(ph)ELPQDVYTIK ddPTM_HeLa_CUDC101_4h_R1 1 RKSELPQDVYTIK 13 2 H0Y8C4;E9PFR3;Q14738-3;Q14738-2;Q14738 H0Y8C4 PPP2R5D Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform 1 0 RKS(1)ELPQDVYTIK 79.92 0.026119 212740000 4111.6 3178.6 3504.9 3412 4577.6 5404.1 5063.2 3940.1 3069.5 3483.8 TRUE FALSE FALSE 3629.644481 3276.528898 3694.385496 3551.156108 4239.919568 5301.025796 5258.48932 4388.625058 2942.973911 3463.078203 1.048097752 0.94613194 1.066792397 1.025433415 1.224321058 1.530726564 1.518443712 1.267261321 0.849814454 1 11.75783925 -5.538891682 3.042588749 1.020589711 1.444975865 0.826193041 0.091994845 0.06002299 1.135154973 0.010400739 0.023549342 2.89E-06 5.538891682 0.424386154 ETQST(ph)PQSAPQVR ddPTM_HeLa_CUDC101_4h_R1 2 ETQSTPQSAPQVR 13 0 Q9UJF2-2;Q9UJF2;H0Y638 Q9UJF2-2 RASAL2 Ras GTPase-activating protein nGAP 1 0 ETQS(0.02)T(0.971)PQS(0.009)APQVR;ETQS(0.097)T(0.843)PQS(0.06)APQVR ; 150.34 0.0016038 9876000 3432.8 3289 3413.9 3531.1 3599.7 3037.3 2662.6 1189.71 2891.7 3095.4 TRUE FALSE FALSE 3030.412388 3390.330192 3598.46576 3675.113521 3334.157303 2979.368563 2765.297374 1325.141777 2772.502902 3076.988423 0.98486311 1.101833912 1.169476535 1.194386528 1.083578111 0.968274219 0.89870256 0.430661931 0.901044307 1 11.5873033 -4.139546648 1.754252158 1.034029225 0.085004728 0.821687887 0.086761913 0.428390053 1.009367915 0.013319307 0.743214988 7.25E-05 4.139546648 -0.949024496 down SEPVKEES(ph)SELEQPFAQDTSSVGPDRK ddPTM_HeLa_CUDC101_4h_R1 1 SEPVKEESSELEQPFAQDTSSVGPDRK 27 2 Q15424-2;Q15424;Q15424-4;Q15424-3;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 S(0.001)EPVKEES(0.5)S(0.5)ELEQPFAQDTSSVGPDRK 72.271 0.00015551 12679000 742.82 584.5 751.17 600.05 866.4 947.95 811.73 855.55 675.88 711.41 TRUE FALSE FALSE 655.7477656 602.5077522 791.7805224 624.5226326 802.4873981 929.8694331 843.038698 952.9423537 648.0199403 707.1785017 0.927273332 0.851988219 1.119633191 0.883118804 1.134773464 1.314900596 1.192115846 1.347527324 0.916345645 1 9.465930607 -5.538462066 3.957555926 0.963315626 1.272151379 0.782696452 0.079368585 0.071476727 2.518106686 0.010731354 0.023293037 2.89E-06 5.538462066 0.308835754 NVFEVGPGDS(ph)PTFPR ddPTM_HeLa_CUDC101_4h_R1 2 NVFEVGPGDSPTFPR 15 0 Q16584;Q16584-2 Q16584 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 0 NVFEVGPGDS(0.835)PT(0.165)FPR;NVFEVGPGDS(0.985)PT(0.015)FPR ; 193.41 4.07E-16 21678400 2801.42 2721.03 2061.33 2113.6 2947.3 2836.6 2969.2 2343.2 2668.81 2548.19 TRUE FALSE FALSE 2473.041794 2804.861709 2172.771735 2199.801744 2729.883551 2782.496581 3083.723039 2609.940416 2558.800522 2533.033253 0.976316356 1.107313418 0.857774659 0.868445664 1.07771327 1.098484032 1.217403299 1.030361687 1.010172496 1 11.3066503 -5.538376376 23.97922938 0.979710831 1.119362328 0.416354312 0.079278574 105.0123467 162483.4501 0.011180359 0.022368103 2.89E-06 5.538376376 0.139651497 DDGSSMSFYVRPS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 1 DDGSSMSFYVRPSPAK 16 1 Q9NYB0;A0A590UJT3 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 0 DDGSSMSFYVRPS(1)PAK 127.05 0.0025208 13396000 1171.9 1081.7 1002.7 882.24 1177.3 1304.7 915.76 994.83 1164.4 1062.8 TRUE FALSE FALSE 1034.531658 1115.025895 1056.908995 918.2215606 1090.452925 1279.815021 951.08117 1108.077426 1116.402939 1056.478418 0.979226495 1.055417579 1.000407558 0.869134234 1.032158259 1.211397222 0.900237197 1.04884057 1.056721008 1 10.04504758 -5.537016142 24.99548169 0.987161456 1.0521015 0.091387216 0.08501743 363.3701401 642451.4064 0.011292322 0.022592541 2.90E-06 5.537016142 0.064940045 GYSFT(ph)TTAER ddPTM_HeLa_CUDC101_4h_R1 1 GYSFTTTAER 10 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 GYS(0.236)FT(0.729)T(0.034)T(0.001)AER 128.51 0.013279 35424000 1726.9 1364.3 1421 1567.6 1328.2 1087.8 1177.3 1107.8 1461.5 1106.4 TRUE FALSE FALSE 1524.4754 1406.332466 1497.823558 1631.533504 1230.221332 1067.052027 1222.708855 1233.907474 1401.256351 1099.819084 1.386114701 1.278694366 1.361881768 1.483456259 1.118566999 0.970206867 1.111736352 1.121918589 1.274078957 1 10.10305051 -5.536700405 24.98737199 1.231295222 1.067674571 0.333861333 0.132877959 337.6882327 610485.6455 0.026627538 0.053274874 2.91E-06 5.536700405 -0.163620652 ASSEDAGPS(ph)PQTR ddPTM_HeLa_CUDC101_4h_R1 1 ASSEDAGPSPQTR 13 0 Q5T5P2;Q5T5P2-2;Q5T5P2-7;Q5T5P2-3;Q5T5P2-9;Q5T5P2-10;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 ASSEDAGPS(0.994)PQT(0.005)R 129.17 0.0012455 10412000 3085.4 3254.4 3714.7 3182.5 3006.9 2262.4 2632.2 2029.7 3367.8 3378.3 TRUE FALSE FALSE 2723.734089 3354.664207 3915.527918 3312.296106 2785.086978 2219.248489 2733.724836 2260.752844 3228.977859 3358.205721 0.811068265 0.998945415 1.165958325 0.986329124 0.82933781 0.66084352 0.814043291 0.673202606 0.961518777 1 11.7134749 -5.536571857 4.503391283 0.941591253 0.727019644 0.60122414 0.095709254 0.148089836 7.492011675 0.017014161 0.036379336 2.91E-06 5.536571857 -0.214571609 PQLELAES(ph)SPAASFLSSR ddPTM_HeLa_CUDC101_4h_R1 1 PQLELAESSPAASFLSSR 18 0 H0YCR5;Q9BQC3-2;Q9BQC3-3;Q9BQC3 H0YCR5 DPH2 Diphthamide biosynthesis protein 2 1 0 PQLELAES(0.499)S(0.499)PAASFLSS(0.002)R 101.53 0.00055516 0 939.01 595.59 667.69 564.34 698.8 630.85 441.5 366.21 712.6 1006.9 TRUE FALSE FALSE 828.9406712 613.939422 703.7873411 587.3562245 647.2509162 618.8175873 458.5288029 407.8978661 683.2263264 1000.910914 0.828186265 0.613380685 0.703146835 0.58682168 0.646661863 0.618254411 0.458111503 0.407526644 0.682604532 1 9.967097858 -5.536461666 0.149229425 1.185071403 3.85E-11 0.479876632 0.11626789 2.757683244 0.121107903 0.24440676 0.760416377 2.91E-06 5.536461666 -1.185071403 T(ph)PAPEPEPCEASELPAKR ddPTM_HeLa_CUDC101_4h_R1 2 TPAPEPEPCEASELPAKR 18 1 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 0 T(1)PAPEPEPCEASELPAKR;T(1)PAPEPEPCEASELPAKR ; 158.5 0.00031981 53188000 3825.2 3018.8 3450.8 3437.7 3215.6 3004.6 2536.79 2782.11 3269.5 2845.8 TRUE FALSE FALSE 3376.815855 3111.80565 3637.360686 3577.904265 2978.391594 2947.292261 2634.63484 3098.814157 3134.729826 2828.873055 1.193696496 1.10001601 1.285798484 1.264780779 1.052854453 1.041860912 0.931337246 1.095423547 1.108119652 1 11.46601172 -5.535686748 24.94963123 1.12283545 1.01932644 0.284544504 0.090328962 315.9883768 615535.3544 0.016344573 0.032703173 2.91E-06 5.535686748 -0.10350901 KIPDPDSDDVS(ph)EVDAR ddPTM_HeLa_CUDC101_4h_R1 2 KIPDPDSDDVSEVDAR 16 1 P51532-5;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;P51532;A0A2R8Y4C5;P51532-4;P51532-2;P51532-3;A0A2R8Y6V2;A0A2R8Y6N0;A0A2R8YG32;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y526;A0A2R8YDA1;A0A2R8Y7Y7;A0A2R8YF58;A0A2R8YGP5;A0A2R8Y583;A0A2R8Y7R0 P51532-5 SMARCA4 Transcription activator BRG1 1 0 KIPDPDS(0.001)DDVS(0.999)EVDAR;KIPDPDS(0.397)DDVS(0.603)EVDAR ; 126.19 6.44E-05 29234000 4401.1 3196.15 3490.01 3404.94 4293.11 4330.22 3965.07 3748.38 3395.97 3761.57 TRUE FALSE FALSE 3885.20973 3294.619593 3678.690497 3543.808171 3976.415828 4247.628268 4118.004078 4175.080428 3255.986679 3739.196014 1.039049495 0.88110374 0.983818576 0.947746028 1.063441396 1.135973683 1.101307357 1.116571694 0.870771863 1 11.86851239 -5.534982385 5.579250333 1.000119683 1.114280944 0.547385401 0.060085704 0.097899219 10.07598114 0.007136002 0.014948116 2.92E-06 5.534982385 0.114161261 TCNSPQNST(ph)DSVSDIVPDSPFPGALGSDTR ddPTM_HeLa_CUDC101_4h_R1 1 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 T(0.014)CNS(0.329)PQNS(0.159)T(0.38)DS(0.114)VS(0.003)DIVPDSPFPGALGSDTR 83.764 9.92E-07 12221000 873.81 971.29 691.7 594.14 961.76 914.44 957.26 756.95 967.12 953.27 TRUE FALSE FALSE 771.3833164 1001.214294 729.0953943 618.3715973 890.8128809 896.9985806 994.1818389 843.1181283 927.2549043 947.5999076 0.814039037 1.056579138 0.76941269 0.652566122 0.940072781 0.946600536 1.049157805 0.889740619 0.978529965 1 9.888134248 -5.534257601 24.97068861 0.89014016 0.966027406 0.092684865 0.117260199 474.4876211 1041252.333 0.018452096 0.03692924 2.92E-06 5.534257601 0.075887246 VVSDADDS(ph)DSDAVSDK ddPTM_HeLa_CUDC101_4h_R1 1 VVSDADDSDSDAVSDK 16 0 Q96ST2-3;Q96ST2;Q96ST2-2 Q96ST2-3 IWS1 Protein IWS1 homolog 1 0 VVSDADDS(0.927)DS(0.073)DAVSDK 219.85 2.06E-32 8634300 822.53 718.14 785.76 787.85 936.18 1006.2 830.65 758.25 1048.1 951.71 TRUE FALSE FALSE 726.1142803 740.2650422 828.2405624 819.9819284 867.1198665 987.0084114 862.6884487 844.566115 1004.896874 946.0491866 0.767522757 0.782480502 0.875473045 0.866743442 0.916569539 1.043295027 0.911885408 0.892729603 1.062203624 1 9.885771383 -5.533622869 8.519908555 0.876558081 0.951237888 0.055970764 0.091644658 0.265034288 145.0121447 0.014472719 0.029569425 2.93E-06 5.533622869 0.074679808 LTFDSSFS(ph)PNTGKK ddPTM_HeLa_CUDC101_4h_R1 2 LTFDSSFSPNTGKK 14 1 C9JI87;P21796 C9JI87 VDAC1 Voltage-dependent anion-selective channel protein 1 1 0 LTFDS(0.026)S(0.057)FS(0.916)PNT(0.001)GKK;LTFDS(0.006)S(0.013)FS(0.947)PNT(0.034)GKK ; 145.94 0.00071745 109070000 13707.5 12775.7 8307.6 11860.2 11363.9 10028.3 8914.2 10323.4 9145 10486 TRUE FALSE FALSE 12100.72763 13169.30417 8756.733985 12343.91022 10525.60774 9837.026886 9258.02368 11498.57413 8768.039229 10423.62881 1.160893951 1.263408782 0.840084979 1.184223887 1.009783439 0.943723829 0.888176647 1.103125825 0.841169557 1 13.34756999 -5.533410061 24.67502092 1.081134909 0.97056355 0.016642413 0.140557692 256.8218712 601736.0758 0.017317044 0.034662473 2.93E-06 5.533410061 -0.110571358 GGVGAPGS(ph)PSTPPTR ddPTM_HeLa_CUDC101_4h_R1 1 GGVGAPGSPSTPPTR 15 0 Q9ULR3 Q9ULR3 PPM1H Protein phosphatase 1H 1 0 GGVGAPGS(0.932)PS(0.022)T(0.044)PPT(0.002)R 87.932 0.013125 4406000 1308.2 1114.5 1100 957.09 1290.2 1374.1 1184.5 971.74 1281.9 1136.4 TRUE FALSE FALSE 1154.854779 1148.836424 1159.469327 996.1242671 1195.024516 1347.891332 1230.186562 1082.358954 1229.059539 1129.640642 1.022320494 1.016992821 1.026405464 0.881806328 1.057880242 1.193203645 1.089006995 0.958144487 1.088009313 1 10.14164818 -5.532994142 24.98634541 1.003209352 1.088429707 0.183072851 0.071404101 204.3522447 504775.8073 0.009272454 0.01855965 2.93E-06 5.532994142 0.085220355 IQVEQTRDEDLDTDS(ph)LD ddPTM_HeLa_CUDC101_4h_R1 4 IQVEQTRDEDLDTDSLD 17 1 V9GYT7 V9GYT7 PSIP1 1 0 IQVEQTRDEDLDT(0.11)DS(0.89)LD;IQVEQTRDEDLDTDS(1)LD;IQVEQTRDEDLDT(0.068)DS(0.932)LD;IQVEQTRDEDLDT(0.011)DS(0.989)LD ;;; 128.82 0.0013392 89246000 8410 8381.16 8453 8174.2 11092.6 11201 10150.5 10955.2 8731.4 8492.6 TRUE FALSE FALSE 7424.192549 8639.373605 8909.994749 8507.579208 10274.321 10987.35959 10542.00819 12202.29569 8371.487996 8442.085638 0.879426349 1.023369577 1.055425772 1.007757985 1.217035865 1.301498239 1.248744521 1.44541245 0.991637417 1 13.04338375 -5.532941964 0.800738692 0.945793843 1.397045032 0.868997826 0.060520809 0.204531819 0.221383957 0.011811582 0.05607032 2.93E-06 5.532941964 0.451251189 S(ph)SSPAPADIAQTVQEDLR ddPTM_HeLa_CUDC101_4h_R1 2 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 0 S(0.546)S(0.105)S(0.349)PAPADIAQTVQEDLR;S(0.884)S(0.065)S(0.051)PAPADIAQTVQEDLR ; 189.44 1.68E-11 58457400 2866.45 2771.7 2568.51 2574.2 2707.79 2395.62 2162 2436.7 2822.89 2616.9 TRUE FALSE FALSE 2530.449076 2857.092792 2707.37142 2679.187003 2508.041726 2349.92754 2245.389064 2714.084079 2706.529279 2601.334562 0.972750339 1.098318084 1.040762484 1.029927884 0.964136548 0.903354599 0.86316812 1.043342951 1.04043875 1 11.34503624 -5.532783881 5.720717182 1.003143922 0.929670715 0.308388921 0.056181493 0.169001092 19.36283938 0.008125339 0.017023989 2.93E-06 5.532783881 -0.073473207 KS(ph)SPSVKPAVDPAAAK ddPTM_HeLa_CUDC101_4h_R1 1 KSSPSVKPAVDPAAAK 16 2 H3BV90;Q6FI81-3;Q6FI81;H3BPG7;H3BT65 H3BV90 CIAPIN1 Anamorsin 1 0 KS(0.773)S(0.227)PS(0.001)VKPAVDPAAAK 113.23 0.0010652 417130000 11185 8731.1 10119 10372 10054 9320.3 8864.4 7702.7 9640.3 9520.3 TRUE FALSE FALSE 9873.911255 9000.094842 10666.06375 10795.01499 9312.33645 9142.530806 9206.302877 8579.544233 9242.922754 9463.672832 1.043348754 0.951015002 1.127053306 1.140679225 0.984008705 0.966065815 0.972804432 0.906576589 0.976673953 1 13.20818448 -5.531867537 24.99849772 1.032785528 0.954934935 0.329024801 0.058592328 196.6189036 546811.2652 0.008573078 0.017165053 2.94E-06 5.531867537 -0.077850593 ASEQETAKEEDGS(ph)VELESQVQK ddPTM_HeLa_CUDC101_4h_R1 2 ASEQETAKEEDGSVELESQVQK 22 1 A0A087WVF1;Q96B23-2;Q96B23;K7EQH1 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 AS(0.004)EQET(0.101)AKEEDGS(0.695)VELES(0.2)QVQK;ASEQET(0.028)AKEEDGS(0.958)VELES(0.013)QVQK ; 75.611 0.0011948 32043000 4821 3713.3 3677.1 3448.7 5355.9 5808.6 4391.4 5391.5 6421.9 4791.7 TRUE FALSE FALSE 4255.889688 3827.702372 3875.895149 3589.352893 4960.805927 5697.810633 4560.777769 6005.246567 6157.186564 4763.198755 0.893494038 0.803599129 0.813716863 0.753559336 1.041486233 1.196215175 0.957503141 1.260759182 1.292657913 1 12.21771503 -5.531796642 24.37444199 0.912157588 1.11988644 0.262436168 0.158591796 102.7913418 280949.4565 0.016283656 0.03260844 2.94E-06 5.531796642 0.207728853 RGWDSSHEDDLPVYLAR ddPTM_HeLa_CUDC101_4h_R1 1 RGWDSSHEDDLPVYLAR 17 1 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 0 0 114.06 0.00048356 5180800 2884.7 2094.4 2076.7 2235.3 3293.1 2822.1 2684.7 2946.7 2788.3 3299 FALSE FALSE TRUE 2546.559839 2158.925982 2188.972684 2326.465196 3050.174574 2768.273144 2788.249778 3282.140417 2673.365094 3279.377401 0.776537595 0.658334104 0.667496423 0.70942283 0.930107822 0.844145948 0.850237541 1.000842543 0.815205073 1 11.67920623 -2.384558548 15.7477691 0.853424734 0.816175218 0 0.122446512 0 0 0.019257772 0 0.004125166 2.384558548 -0.037249516 (ac)ADGDS(ph)GSERGGGGGPCGFQPASR ddPTM_HeLa_CUDC101_4h_R1 1 ADGDSGSERGGGGGPCGFQPASR 23 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 ADGDS(0.5)GS(0.5)ERGGGGGPCGFQPASR 64.52 0.0001206 30823000 214.51 0 184.67 103.86 166.47 199.3 109.9 170.81 209.16 114.45 TRUE FALSE FALSE 189.365463 0 194.6538188 108.0958597 154.1898398 195.4986846 114.1388798 190.25432 200.5383363 113.7692463 1.664469697 0 1.710952873 0.950132511 1.355285763 1.718379007 1.003248976 1.672282503 1.762676143 1 6.829966816 -5.531694367 24.383833 1.219201639 1.438220482 0.055130586 0.516219109 426.2281659 1178936.797 0.071289765 0.142763847 2.94E-06 5.531694367 0.219018843 AWTSETMS(ph)T(ph)PLMR ddPTM_HeLa_CUDC101_4h_R1 1 AWTSETMSTPLMR 13 0 Q8NET4 Q8NET4 RGAG1 Retrotransposon gag domain-containing protein 1 2 0 AWT(0.003)S(0.054)ET(0.322)MS(0.713)T(0.908)PLMR 54.343 0.0033002 0 1273.5 907.06 764.74 751.2 1214.5 1190.2 1229.4 946.21 1279.4 1113.1 TRUE FALSE FALSE 1124.222261 935.0054435 806.0841576 781.837183 1124.908755 1167.498918 1276.81837 1053.922722 1226.66259 1106.479232 1.016035573 0.845027558 0.728512686 0.706599058 1.016656004 1.055147611 1.153946982 0.952501133 1.108617817 1 10.11176066 -5.531057041 24.99609398 0.94851708 1.05921153 0.177588013 0.130711995 318.9903737 974959.0427 0.020814623 0.041685293 2.94E-06 5.531057041 0.11069445 AEPVPGGQTS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 2 AEPVPGGQTSSPR 13 0 O15018-2;O15018 O15018-2 PDZD2 PDZ domain-containing protein 2;Processed PDZ domain-containing protein 2 1 0 AEPVPGGQT(0.106)S(0.447)S(0.447)PR;AEPVPGGQT(0.03)S(0.485)S(0.485)PR ; 134.04 0.00015106 8834500 4306.8 3920.8 4083.5 3737.3 4082.7 3573.5 3510.6 3288.7 4186.7 3945.2 TRUE FALSE FALSE 3801.963433 4041.595201 4304.266362 3889.723248 3781.527355 3505.341441 3646.005018 3663.072315 4014.122454 3921.733775 0.969459849 1.030563376 1.097541702 0.991837659 0.964248868 0.893824426 0.929692128 0.934044105 1.023558121 1 11.93727589 -5.529872813 3.495631609 0.998535264 0.920491473 0.569260695 0.036610831 0.171779294 4.455647425 0.005962159 0.013254654 2.95E-06 5.529872813 -0.078043791 T(ph)VSDNSLSNSR ddPTM_HeLa_CUDC101_4h_R1 3 TVSDNSLSNSR 11 0 H0Y7W6;B7ZL14;Q96RU3-4;Q96RU3-3;Q96RU3-5;Q96RU3-2;Q96RU3 H0Y7W6;Q96RU3-5 FNBP1 Formin-binding protein 1 1 0 T(0.614)VS(0.384)DNS(0.002)LSNSR;T(0.998)VSDNS(0.001)LSNSR;T(0.925)VS(0.046)DNS(0.029)LSNSR ;; 188.15 3.08E-10 468150000 6567.9 6515.8 6010.8 5985.1 6267.9 5480.9 5641.4 5100.1 6279.1 6024.8 TRUE FALSE FALSE 5798.020718 6716.544075 6335.76203 6229.198248 5805.529504 5376.360964 5858.990688 5680.674769 6020.27284 5988.964222 0.968117441 1.121486759 1.057906141 1.040112784 0.969371212 0.897711318 0.978297828 0.948523744 1.005227718 1 12.5480908 -5.5291733 22.31249719 1.005470175 0.94324825 0.371561786 0.047079309 48.60837808 172303.2964 0.007830486 0.015710903 2.96E-06 5.5291733 -0.062221925 SVS(ph)TPPR ddPTM_HeLa_CUDC101_4h_R1 1 SVSTPPR 7 0 Q9UQ84-4;Q9UQ84 Q9UQ84-4 EXO1 Exonuclease 1 1 0 S(0.002)VS(0.499)T(0.499)PPR 98.629 0.023494 12093000 7296.5 5415.7 6777 6738.2 6601.2 5532.4 4690.6 2484.7 6844.6 7245.2 TRUE FALSE FALSE 6441.215331 5582.551298 7143.385119 7013.012921 6114.242627 5426.878688 4871.518013 2767.548204 6562.462691 7202.105228 0.894351738 0.775127705 0.991846813 0.973744856 0.848952137 0.753512829 0.676401949 0.384269337 0.911186727 1 12.81420296 -4.139114982 0.795634461 0.94131188 4.48E-12 0.8602294 0.066580205 0.797434628 0.31845416 0.011907018 0.692486789 7.26E-05 4.139114982 -0.94131188 down S(ph)RTPLLPR ddPTM_HeLa_CUDC101_4h_R1 3 SRTPLLPR 8 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.998)RT(0.002)PLLPR;S(0.996)RT(0.004)PLLPR;S(0.975)RT(0.025)PLLPR ;; 114.86 0.0022372 6841500 2768.37 2425.25 2707.06 2717.54 3391.14 3513.7 3060.92 3112.51 3608.54 3525.8 TRUE FALSE FALSE 2443.865865 2499.969078 2853.411852 2828.373027 3140.982358 3446.682027 3178.98071 3466.825557 3459.794454 3504.828385 0.697285458 0.713292864 0.814137395 0.806993301 0.896187206 0.983409642 0.907028921 0.989157008 0.987150888 1 11.77512809 -5.528558589 4.346799501 0.835217802 0.953591388 0.253789254 0.094755866 0.295089775 13.62134795 0.018137101 0.039204594 2.96E-06 5.528558589 0.118373586 VSAEAEVAPVSPEVT(ph)QEVVEEHCASPEDK ddPTM_HeLa_CUDC101_4h_R1 1 VSAEAEVAPVSPEVTQEVVEEHCASPEDK 29 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VSAEAEVAPVS(0.468)PEVT(0.532)QEVVEEHCASPEDK 69.578 0.00010976 4122000 1792.3 1664.8 1336.5 1252 1781.8 1874.8 1514.2 1691.5 1407.7 1489.4 TRUE FALSE FALSE 1582.209311 1716.090515 1408.755233 1303.061972 1650.360164 1839.041314 1572.603201 1884.053523 1349.67401 1480.540983 1.068669716 1.159096935 0.951513838 0.880125567 1.114700764 1.242141444 1.062181473 1.272543986 0.91160868 1 10.53190871 -5.5284055 24.87207217 1.026274016 1.179135382 0.460759591 0.093058792 101.1743494 455315.0352 0.012356651 0.024775605 2.96E-06 5.5284055 0.152861367 WS(ph)YDSVLDDEGR ddPTM_HeLa_CUDC101_4h_R1 1 WSYDSVLDDEGR 12 0 E9PQR4 E9PQR4 TUB Tubby-like protein 1 0 WS(1)YDSVLDDEGR 116.9 0.0040195 1749400 286.25 401.28 436.53 258.98 458.42 579.86 514.8 267.28 403.48 434.19 TRUE FALSE FALSE 252.6962089 413.6429612 460.1301322 269.5423238 424.6032699 568.8001366 534.6560084 297.7060748 386.8483836 431.6074186 0.585476982 0.958377784 1.066084855 0.624508088 0.983771946 1.317864597 1.238755372 0.689761255 0.896296882 1 8.753575852 -5.527665858 24.75703985 0.822364796 1.106627978 0.179148971 0.211196296 126.4648262 654025.128 0.033709529 0.067621049 2.97E-06 5.527665858 0.284263182 ASVGMYLIS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ASVGMYLISK 10 0 F8WEJ5;P08243-3;P08243-2;P08243 F8WEJ5 ASNS Asparagine synthetase [glutamine-hydrolyzing] 1 0 ASVGMYLIS(1)K 83.005 0.039036 30080000 1660.8 1193.9 1377 1033.7 1597.8 1558.1 1495.9 1466.3 1682 1370.8 TRUE FALSE FALSE 1466.123542 1230.682644 1451.444785 1075.858754 1479.933477 1528.381838 1553.597364 1633.217665 1612.667248 1362.646421 1.07593835 0.903156259 1.065166109 0.789536257 1.086072994 1.121627603 1.140132422 1.198563061 1.183481807 1 10.41219554 -5.527663881 24.99811332 1.00968796 1.14406689 0.311729035 0.100533431 111.548709 582742.8761 0.012476196 0.025022206 2.97E-06 5.527663881 0.13437893 EQTLSPTIT(ph)SGLHNIAR ddPTM_HeLa_CUDC101_4h_R1 2 EQTLSPTITSGLHNIAR 17 0 D6REX3;O94979-3;O94979-9;O94979-2;O94979;O94979-8;H7BXG7;O94979-7;O94979-6;O94979-10;O94979-4;H0Y8W8 D6REX3 SEC31A Protein transport protein Sec31A 1 0 EQT(0.122)LS(0.06)PT(0.06)IT(0.753)S(0.004)GLHNIAR;EQT(0.011)LS(0.116)PT(0.116)IT(0.72)S(0.038)GLHNIAR ; 235.4 8.57E-43 30383700 6244.8 4047.3 3437.3 3261.4 5593.7 5664 5060.4 5111.9 5549.6 4864.9 TRUE FALSE FALSE 5512.794011 4171.992516 3623.130835 3394.413989 5181.063895 5555.968637 5255.581323 5693.818033 5320.843139 4835.963358 1.139957771 0.862701432 0.749205601 0.70191061 1.07136128 1.148885594 1.086770294 1.177390648 1.100265396 1 12.2395876 -5.527371463 24.98749749 0.996917446 1.128846442 0.241301344 0.142156067 214.7767824 1194540.276 0.024857731 0.04987328 2.97E-06 5.527371463 0.131928996 (ac)MNFT(ph)PTHTPVCR ddPTM_HeLa_CUDC101_4h_R1 2 MNFTPTHTPVCR 12 0 Q9BR77;F5H5Q8 Q9BR77 CCDC77 Coiled-coil domain-containing protein 77 1 0 MNFT(0.976)PT(0.017)HT(0.006)PVCR;MNFT(0.9)PT(0.072)HT(0.028)PVCR ; 80.312 0.0061678 8236200 886.95 649.95 815.38 729.24 694.37 731.55 653.77 611.81 768.46 822.99 TRUE FALSE FALSE 782.9830655 669.9741891 859.4619092 758.9815592 643.1477085 717.5969026 678.9861279 681.4559774 736.7837535 818.0948189 0.957081071 0.818944423 1.050565154 0.927742777 0.786153015 0.877156151 0.829960186 0.832979212 0.900609241 1 9.676124254 -5.527151222 0.272450396 1.006413949 0.747528041 0.242472764 0.07076898 2.936024233 0.303762907 0.046086967 0.248738693 2.97E-06 5.527151222 -0.258885908 VQGS(ph)PLKK ddPTM_HeLa_CUDC101_4h_R1 1 VQGSPLKK 8 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 VQGS(1)PLKK 75.294 0.0033161 0 2587.2 1418.1 3274.3 3569.1 2319.2 1629.4 1807.1 999.73 2821.5 3348.5 TRUE FALSE FALSE 2283.932338 1461.78998 3451.318562 3714.663325 2148.117236 1598.32191 1876.800452 1113.535222 2705.196576 3328.582973 0.68615755 0.439162849 1.036873225 1.115989403 0.645354871 0.480180883 0.563843674 0.334537318 0.812717183 1 11.70069242 -5.527029914 24.38882767 0.847285871 0.485422034 0.463073103 0.188183929 67.76104665 398107.7007 0.030828889 0.061883336 2.97E-06 5.527029914 -0.361863837 GALHTVS(ph)HEDIRDIR ddPTM_HeLa_CUDC101_4h_R1 1 GALHTVSHEDIRDIR 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2;H0YD72 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 GALHT(0.001)VS(0.999)HEDIRDIR 87.824 0.0060939 22354000 1157.7 1653.9 1487.3 1487.4 2924.7 1667.4 2083 2680.8 1628.8 1192.7 TRUE FALSE FALSE 1021.996161 1704.854699 1567.707937 1548.062601 2708.950708 1635.597123 2163.342008 2985.971436 1561.660175 1185.605767 0.862003365 1.437960868 1.322284338 1.305714466 2.284866338 1.379545519 1.824672305 2.518519661 1.317183348 1 10.21140866 -5.526908156 0.444842129 0.902453836 2.433585408 0.564546451 0.331955726 0.826406447 0.222127076 0.086263778 0.56250806 2.97E-06 5.526908156 1.531131572 RQS(ph)PLPPQK ddPTM_HeLa_CUDC101_4h_R1 6 RQSPLPPQK 9 1 Q01105;B2REB7 Q01105 SET Protein SET 1 0 RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK;RQS(1)PLPPQK ;;;;; 134.3 0.005375 1161063000 56783.6 50786 55202.6 54925 52910.5 47079.5 44235.4 40813 53721.8 53025.1 TRUE FALSE FALSE 50127.51249 52350.65646 58187.01953 57165.07891 49007.39783 46181.53698 45941.5742 45458.98695 51507.36467 52709.70435 0.951011073 0.993188202 1.103914739 1.084526647 0.929760439 0.876148663 0.871596128 0.86244056 0.977189406 1 15.68578098 -5.526278235 24.89933393 0.995489566 0.87567176 0.654663847 0.04713215 59.62840143 436743.8124 0.008139798 0.016344962 2.98E-06 5.526278235 -0.119817806 RMS(ph)DEFVDSFK ddPTM_HeLa_CUDC101_4h_R1 4 RMSDEFVDSFK 11 1 Q92934;F5H3B1;F5H1R6 Q92934 BAD Bcl2-associated agonist of cell death 1 0 RMS(1)DEFVDSFK;RMS(1)DEFVDSFK;RMS(1)DEFVDSFK;RMS(0.998)DEFVDS(0.002)FK ;;; 135.47 0.00061804 13065800 11842.5 10337.3 11180.1 10482 12379 11886 10875.9 10751.9 11965.9 12288.2 TRUE FALSE FALSE 10454.3401 10655.77996 11784.53002 10909.50127 11465.82583 11659.29435 11295.38711 11975.85284 11472.66054 12215.10924 0.855853181 0.872344221 0.964750277 0.893115326 0.938659295 0.954497756 0.924706188 0.980413077 0.939218824 1 13.57637915 -5.526260787 24.17819837 0.925297119 0.9497262 0.101238314 0.041932656 214.816139 1535720.989 0.008603332 0.017282811 2.98E-06 5.526260787 0.024429081 RGS(ph)PSAAFTFPDTDDFGK ddPTM_HeLa_CUDC101_4h_R1 4 RGSPSAAFTFPDTDDFGK 18 1 Q9ULT0;Q9ULT0-4;H7C055;Q9ULT0-3 Q9ULT0 TTC7A Tetratricopeptide repeat protein 7A 1 0 RGS(0.5)PS(0.5)AAFTFPDTDDFGK;RGS(0.764)PS(0.236)AAFTFPDTDDFGK;RGS(0.78)PS(0.217)AAFT(0.002)FPDTDDFGK;RGS(0.893)PS(0.107)AAFTFPDTDDFGK ;;; 149.95 3.46E-05 105635000 13322.3 10946.1 10630.3 11075.3 11968 10593.3 10895.7 9715.3 11208.1 11009.9 TRUE FALSE FALSE 11760.68019 11283.33637 11205.00617 11526.99861 11085.14448 10391.25045 11315.9508 10821.25048 10746.09737 10944.41263 1.07458304 1.030967742 1.023810647 1.053231361 1.012858786 0.949457116 1.033947749 0.988746573 0.981879772 1 13.41790691 -5.525376448 22.28392256 1.035747862 0.992726508 0.188836037 0.031218812 19.88599014 177418.3102 0.004734683 0.009533626 2.98E-06 5.525376448 -0.043021354 RIEQHYFEDR ddPTM_HeLa_CUDC101_4h_R1 2 RIEQHYFEDR 10 1 C9JNK6;O75431-2;O75431 C9JNK6 MTX2 Metaxin-2 0 0 ; ; 123.96 0.0026447 77596000 8589.2 7765.9 7427.1 7967.7 7926.3 8155.2 7093.4 7505.6 8096.1 6409.8 FALSE FALSE TRUE 7582.386996 8005.158174 7828.631492 8292.657245 7341.59264 7999.653147 7366.994814 8360.007165 7762.375331 6371.674225 1.190014858 1.25636652 1.228661607 1.301487953 1.152223479 1.255502536 1.156210213 1.312058161 1.218263059 1 12.63745679 -8.759935614 0.599839727 0.990226792 1.236724546 0.065915276 0.083178176 0.30358929 0.203752767 0.037632926 0.011862079 1.74E-09 8.759935614 0.246497754 RIESLIDRDYMER ddPTM_HeLa_CUDC101_4h_R1 2 RIESLIDRDYMER 13 2 A0A669KAX4;Q13620-1;Q13620;Q13620-3;K4DI93;A0A0A0MR50;Q13619-2;Q13619 A0A669KAX4;K4DI93;A0A0A0MR50 CUL4B;CUL4A Cullin-4B;Cullin-4A 0 0 ; ; 107.09 0.0025829 49978000 1952.63 2018.56 2013.85 1774.04 2220.53 2016.74 1742.72 2199.8 1840.39 1894.14 FALSE FALSE TRUE 1723.745671 2080.749441 2122.724823 1846.393019 2056.725926 1978.274045 1809.937294 2450.21634 1764.528345 1882.873571 0.915486678 1.105092489 1.127385744 0.980625066 1.092333525 1.050667488 0.961263317 1.301317506 0.937146483 1 10.87872042 -7.25584242 24.97793377 0.960090931 1.079551177 0.324454485 0.090003102 424.0956019 1892641.412 0.014317291 0.017271546 5.55E-08 7.25584242 0.119460246 RIILLVK ddPTM_HeLa_CUDC101_4h_R1 1 RIILLVK 7 1 P52209-2;P52209;K7EMN2;K7EM49;K7EPF6 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 0 103.28 0.016148 0 280.25 184.87 0 253.75 247.75 206.43 68.361 0 0 0 FALSE FALSE TRUE 247.3995198 190.5656256 0 264.0990218 229.4739761 202.4926917 70.99770667 0 0 0 0 EKTDDT(ph)SGEDNDEKEAVASK ddPTM_HeLa_CUDC101_4h_R1 2 EKTDDTSGEDNDEKEAVASK 20 2 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;C9JQE8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 EKT(0.004)DDT(0.498)S(0.498)GEDNDEKEAVASK;EKT(0.152)DDT(0.424)S(0.424)GEDNDEKEAVASK ; 110.56 0.00039816 47061000 1811.74 1805.23 1673.79 1904.57 1722.44 1365.85 1562.02 1124.47 2232.5 1881.82 TRUE FALSE FALSE 1599.370584 1860.846997 1764.28015 1982.246597 1595.379033 1339.798687 1622.267635 1252.47512 2140.475405 1870.626851 0.854991781 0.994771884 0.943149164 1.059669702 0.852857978 0.716229795 0.867232091 0.669548349 1.144255683 1 10.86930609 -5.523897225 24.98448337 0.944661467 0.7662792 0.549903542 0.094198927 19.53752089 479278.6325 0.011214278 0.022578676 2.99E-06 5.523897225 -0.178382267 MNKEGMVRCDT(ph)AVGT(ph)PDYIS(ph)PEVLK ddPTM_HeLa_CUDC101_4h_R1 1 MNKEGMVRCDTAVGTPDYISPEVLK 25 2 A0A0U1RQV4;Q13464 A0A0U1RQV4 ROCK1 Rho-associated protein kinase 1 3 0 MNKEGMVRCDT(1)AVGT(0.989)PDY(0.075)IS(0.936)PEVLK 47.175 0.021321 14697000 1884.3 1372.8 1633.3 1444.8 1357.2 1257.3 987.35 972.11 1496.9 1719.9 TRUE FALSE FALSE 1663.42521 1415.094341 1721.601138 1503.725189 1257.08206 1233.319097 1025.43242 1082.771073 1435.197148 1709.669958 0.972951067 0.827700302 1.006978645 0.879541213 0.735277621 0.721378469 0.599783844 0.633321693 0.839458599 1 10.73950213 -5.523749728 0.697456327 0.986292157 0.569622999 0.740165716 0.071173808 0.219972029 0.170010089 0.009781907 0.052432097 2.99E-06 5.523749728 -0.416669158 RILVATNLFGR ddPTM_HeLa_CUDC101_4h_R1 2 RILVATNLFGR 11 1 Q13838-2;Q13838;Q5STU3;A0A0G2JJZ9;A0A140T9X3;H0Y400;O00148 Q13838-2;O00148 DDX39B;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A 0 0 ; ; 172.61 6.61E-05 2875700 754.79 539.47 108.62 745.76 493.4 635.71 577.61 536.12 124.26 0 FALSE FALSE TRUE 666.3146604 556.0904313 114.4923258 776.1753162 457.002865 623.5848909 599.8886112 597.1497337 119.1379502 0 0 DTPGHGSGWAET(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 DTPGHGSGWAETPR 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 DTPGHGS(0.008)GWAET(0.992)PR;DTPGHGS(0.419)GWAET(0.581)PR ; 103.75 0.0080282 12708900 5534.2 4155.6 4061.7 3879.9 5149.1 5223.9 4836.7 4500.1 4159.1 4325.5 TRUE FALSE FALSE 4885.489465 4283.62911 4281.287788 4038.139092 4769.261151 5124.262811 5023.253139 5012.373194 3987.660138 4299.771734 1.136220657 0.996245702 0.99570118 0.93915197 1.109189382 1.19175229 1.168260422 1.165730068 0.927412055 1 12.07004436 -5.5234721 24.999277 1.04571113 1.170535883 0.555569933 0.064075925 14.87833296 626862.8446 0.00997003 0.02009006 3.00E-06 5.5234721 0.124824753 RIPIK(ac)LISK ddPTM_HeLa_CUDC101_4h_R1 1 RIPIKLISK 9 2 F8WEM5;C9K074;Q75N03-2;Q75N03 F8WEM5 CBLL1 E3 ubiquitin-protein ligase Hakai 0 1 RIPIK(1)LISK 110.38 0.00089597 0 2472.2 1185.7 176.34 1799.2 829.37 889.72 764.89 548.11 274.98 0 FALSE TRUE FALSE 2182.412464 1222.230012 185.8734738 1872.579153 768.1890274 872.7500734 794.3920635 610.5046269 263.645208 0 0 RIPLAEWESR ddPTM_HeLa_CUDC101_4h_R1 2 RIPLAEWESR 10 1 P31930 P31930 UQCRC1 "Cytochrome b-c1 complex subunit 1, mitochondrial" 0 0 ; ; 108.35 0.0094143 38984000 6031 4723.3 4295.5 5971.9 4677.7 4788.7 4672.9 4192.4 4489.9 4896.3 FALSE FALSE TRUE 5324.055322 4868.819275 4527.727723 6215.459895 4332.63539 4697.363526 4853.135318 4669.64587 4304.824422 4867.17659 1.093869356 1.000337503 0.93025754 1.277015489 0.890174275 0.96511056 0.997115109 0.959415748 0.884460291 1 12.2488694 GIS(ph)EET(ph)TT(ph)GVHNLY(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 GISEETTTGVHNLYK 15 0 P23526-2;P23526 P23526-2 AHCY Adenosylhomocysteinase 4 0 GIS(1)EET(0.634)T(0.444)T(0.939)GVHNLY(0.983)K 50.791 0.003251 0 829.36 620.48 756.95 831.07 775.98 660.63 639.96 651.1 875.08 787.55 TRUE FALSE FALSE 732.143678 639.5962534 797.8730066 864.9646268 718.7375014 648.0295834 664.6434716 725.2185922 839.008832 782.8656176 0.935209903 0.816993669 1.019169815 1.104869862 0.91808541 0.827766054 0.848987945 0.926364086 1.071715009 1 9.612620873 -5.523270534 24.99997855 0.97031994 0.867016125 0.318236262 0.07860107 13.0857517 835005.4186 0.010902243 0.021968152 3.00E-06 5.523270534 -0.103303815 AGMSSNQSISSPVLDAVPRT(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AGMSSNQSISSPVLDAVPRT(0.761)PS(0.239)R 64.592 0.0070201 30554000 663.91 797.66 689.23 758.37 961.96 1069.1 957.01 892.92 939.99 989.57 TRUE FALSE FALSE 586.0874762 822.2349591 726.4918586 789.2996066 890.9981273 1048.708699 993.9221963 994.5664035 901.2432143 983.6839936 0.595808695 0.835873069 0.738541913 0.80239143 0.905776787 1.066103246 1.01040802 1.011062912 0.916191806 1 9.942051117 -5.522742233 3.06145561 0.800716894 1.026481144 0.468163602 0.101382544 0.239690698 4.583353283 0.022044327 0.050341484 3.00E-06 5.522742233 0.22576425 EES(ph)REPAPASPAPAGVEIR ddPTM_HeLa_CUDC101_4h_R1 2 EESREPAPASPAPAGVEIR 19 1 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 EES(1)REPAPASPAPAGVEIR;EES(1)REPAPASPAPAGVEIR ; 99.13 0.00092109 15391200 1563.64 1331.31 1380.54 1279.36 1709.19 1709.99 1540.16 1585.59 1656.54 1699.03 TRUE FALSE FALSE 1380.35249 1372.326083 1455.176168 1331.537831 1583.106459 1677.37479 1599.564487 1766.087156 1588.25672 1688.924094 0.817296937 0.812544559 0.861599508 0.788394123 0.937346127 0.993161739 0.947090809 1.045687703 0.940395561 1 10.72188877 -5.522312069 24.98660096 0.889976875 0.986284966 0.41038364 0.064932085 24.62422723 1085757.477 0.012637168 0.025514845 3.00E-06 5.522312069 0.096308091 NS(ph)PATLFEVPDTW ddPTM_HeLa_CUDC101_4h_R1 1 NSPATLFEVPDTW 13 0 O95453;O95453-3;O95453-2;A0A494C0W0;A0A494C0K5;A0A494C0Q6;O95453-4 O95453 PARN Poly(A)-specific ribonuclease PARN 1 0 NS(0.94)PAT(0.06)LFEVPDTW 115.12 0.0032638 9707800 1326.7 961.11 1162.3 984.98 1299.6 1432.7 1314.8 946.35 1624.7 1114.9 TRUE FALSE FALSE 1171.186237 990.7206599 1225.137454 1025.151742 1203.731097 1405.373635 1365.512276 1054.078659 1557.729178 1108.268525 1.05677118 0.893935574 1.105451816 0.925003028 1.086136681 1.268080436 1.232113198 0.951104028 1.405552123 1 10.11409176 -5.521559334 24.99053058 1.016111587 1.161685282 0.001741775 0.156655873 40.76645678 772138.1223 0.013046173 0.026380192 3.01E-06 5.521559334 0.145573695 GAPS(ph)SPATGVLPSPQGK ddPTM_HeLa_CUDC101_4h_R1 1 GAPSSPATGVLPSPQGK 17 0 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 1 0 GAPS(0.8)S(0.2)PATGVLPSPQGK 312.38 2.85E-144 47542000 4277.3 3484.7 3065.9 3104.8 3982.9 4140.7 3444.8 3413.4 3674 3584.5 TRUE FALSE FALSE 3775.921378 3592.059477 3231.651828 3231.427164 3689.089402 4061.723046 3577.66709 3801.967659 3522.556165 3563.179235 1.059705709 1.008105189 0.906957415 0.906894364 1.035336468 1.139915446 1.004065991 1.067015552 0.988599207 1 11.79894934 -5.519976718 24.99547905 1.007957344 1.067692411 0.272165621 0.057267469 170.7693196 1470845.486 0.009410528 0.019097692 3.02E-06 5.519976718 0.059735067 GLLTDS(ph)PAATVLAEAR ddPTM_HeLa_CUDC101_4h_R1 2 GLLTDSPAATVLAEAR 16 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 GLLT(0.151)DS(0.849)PAATVLAEAR;GLLT(0.076)DS(0.902)PAAT(0.022)VLAEAR ; 200.81 1.62E-16 25194000 4958 4765.7 4384.6 4049.7 5115.2 4313.2 4079.8 1443.16 4559.4 5032.6 TRUE FALSE FALSE 4376.830756 4912.525568 4621.644739 4214.86427 4737.861887 4230.932896 4237.159253 1607.443501 4371.459602 5002.665871 0.874899677 0.981981546 0.923836382 0.842523642 0.947067425 0.845735655 0.846980262 0.321317382 0.873826019 1 12.28848138 -4.136116791 1.973812221 0.930948404 6.39E-15 0.912725885 0.054102896 0.251346108 0.778562078 0.008559077 0.47167082 7.31E-05 4.136116791 -0.930948404 down AGS(ph)S(ph)TPGDAPPAVAEVQGR ddPTM_HeLa_CUDC101_4h_R1 1 AGSSTPGDAPPAVAEVQGR 19 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 2 0 AGS(0.872)S(0.718)T(0.41)PGDAPPAVAEVQGR 132.25 0.00039943 9089600 1087 849.35 1064.6 1144.2 1365.9 1357.1 1305.4 1291.6 1363.1 1330.9 TRUE FALSE FALSE 959.5835078 875.5174668 1122.155496 1190.865422 1265.140278 1331.215579 1355.749715 1438.630523 1306.912441 1322.983748 0.725317684 0.661774922 0.848200515 0.900136093 0.95627802 1.006222171 1.02476672 1.087413603 0.987852227 1 10.36957962 -5.519697372 1.452324473 0.847720838 1.050670191 0.435017907 0.097682604 0.393254053 1.613116663 0.019369517 0.058453155 3.02E-06 5.519697372 0.202949354 VLGDHLLLDPTHELPPYT(ph)PPPMLS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 1 VLGDHLLLDPTHELPPYTPPPMLSPVR 27 0 Q96PN7;Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5 Q96PN7 TRERF1;BCAR2 Transcriptional-regulating factor 1 2 0 VLGDHLLLDPT(0.002)HELPPY(0.621)T(0.666)PPPMLS(0.71)PVR 42.254 0.0027707 0 456.98 361.75 259.89 351.24 472.13 490.63 448.46 489.07 282.46 335.8 TRUE FALSE FALSE 403.4134971 372.8950887 273.9404395 365.5650854 437.3019105 481.2720502 465.7572524 544.7437519 270.8168792 333.8026467 1.208538941 1.117112439 0.82066587 1.095153346 1.310061244 1.441786202 1.395307248 1.631933591 0.811308364 1 8.382851583 -5.519276371 2.213290214 1.078614471 1.487748726 0.699179546 0.13933435 0.140122959 1.361069169 0.019035893 0.047249986 3.02E-06 5.519276371 0.409134255 ALEEGDGSVSGSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 ALEEGDGSVSGSSPR 15 0 Q8N3X1;Q8N3X1-2 Q8N3X1 FNBP4 Formin-binding protein 4 1 0 ALEEGDGSVSGS(0.002)S(0.998)PR;ALEEGDGSVSGS(0.002)S(0.998)PR ; 270.21 1.22E-85 446560000 4098.7 4136 3752.9 3587.7 4562.2 3748.4 3326.3 1664.26 3887.7 4099.3 TRUE FALSE FALSE 3618.256599 4263.425258 3955.793126 3734.021913 4225.655595 3676.905515 3454.596505 1853.712631 3727.44736 4074.917181 0.887933776 1.046260591 0.970766509 0.916343019 1.036991774 0.90232644 0.847770973 0.454908051 0.914729599 1 11.99255502 -4.127154102 1.744570241 0.95776276 0.150632179 0.895992701 0.051659518 0.325817907 0.737726953 0.008071227 0.483531941 7.46E-05 4.127154102 -0.807130581 down SQPDPVDT(ph)PTSSKPQSK ddPTM_HeLa_CUDC101_4h_R1 2 SQPDPVDTPTSSKPQSK 17 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 S(0.004)QPDPVDT(0.992)PT(0.003)S(0.001)S(0.001)KPQSK;S(0.001)QPDPVDT(0.872)PT(0.095)S(0.016)S(0.016)KPQS(0.001)K ; 95.067 0.0056097 95689000 10276.6 8824.7 9826.1 9423.1 8896.4 9567.2 8415 3208.5 7943.4 11036.2 TRUE FALSE FALSE 9071.992526 9096.578547 10357.32869 9807.414748 8240.130296 9384.7216 8739.569369 3573.742671 7615.96969 10970.55619 0.826940072 0.829181163 0.944102424 0.893976073 0.751113266 0.855446291 0.796638677 0.325757656 0.694219104 1 13.42134905 -4.126977851 1.791388455 0.897192147 5.79E-19 0.722593615 0.093042 0.435016715 1.047630119 0.01229967 0.733522437 7.46E-05 4.126977851 -0.897192147 down EQPGEEYS(ph)EEEESVLK ddPTM_HeLa_CUDC101_4h_R1 1 EQPGEEYSEEEESVLK 16 0 Q96PY6-4;Q96PY6-2;Q96PY6-6;Q96PY6;Q96PY6-3 Q96PY6-4 NEK1 Serine/threonine-protein kinase Nek1 1 0 EQPGEEYS(0.779)EEEES(0.221)VLK 186.98 6.83E-11 11883000 1381.5 1035.4 1088.6 965.14 1342.2 1391.3 1344.2 1141.3 1262 1097.4 TRUE FALSE FALSE 1219.562664 1067.299447 1147.453009 1004.502581 1243.18858 1364.763271 1396.046244 1271.220979 1209.979826 1090.872616 1.117969822 0.978390539 1.051867094 0.920824821 1.139627636 1.251074828 1.279751846 1.16532486 1.10918526 1 10.09126693 -5.518993117 6.056092823 1.041207173 1.231281222 0.685231876 0.061604618 0.07333932 11.01557942 0.009504286 0.020176838 3.03E-06 5.518993117 0.190074049 TKEVYELLDS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 2 TKEVYELLDSPGK 13 1 E9PBS1;P22234;P22234-2 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 TKEVYELLDS(1)PGK;TKEVYELLDS(1)PGK ; 137.17 0.0042623 770870000 11904.6 9796.8 10049.6 9389.65 10514.6 9067.1 8118.56 3391.4 10548.5 9665.9 TRUE FALSE FALSE 10509.16083 10098.6278 10592.91177 9772.600513 9738.958906 8894.160174 8431.695579 3777.463267 10113.68637 9608.406797 1.093746451 1.051020009 1.102462874 1.017088547 1.01358728 0.925664406 0.87753316 0.39314148 1.052587237 1 13.23008152 -4.126467814 1.348772608 1.044903138 1.62E-21 0.955894951 0.041556091 0.284459117 0.356410642 0.007011471 0.440106978 7.47E-05 4.126467814 -1.044903138 down RY(ph)SPDELR ddPTM_HeLa_CUDC101_4h_R1 2 RYSPDELR 8 1 S5FZ81;Q8WUB8-3;Q8WUB8-2;Q8WUB8 S5FZ81 PHF10 PHD finger protein 10 1 0 RY(0.74)S(0.26)PDELR;RY(0.52)S(0.48)PDELR ; 88.496 0.032417 26137000 3038.6 2702.5 2750.2 2731.3 2932.8 2378.4 2603.2 2464 2750.4 2924.1 TRUE FALSE FALSE 2682.419914 2785.760822 2898.884131 2842.69422 2716.453187 2333.035983 2703.606296 2744.4918 2637.027348 2906.707323 0.92283798 0.958390547 0.997308572 0.977977451 0.934546511 0.802638767 0.930126771 0.944192688 0.90722149 1 11.5051701 -5.516997999 24.07161242 0.965606735 0.891515562 0.317040895 0.044492476 131.829035 539612.9635 0.006530677 0.013428613 3.04E-06 5.516997999 -0.074091173 EAPATGPS(ph)PQHPQK ddPTM_HeLa_CUDC101_4h_R1 1 EAPATGPSPQHPQK 14 0 Q9H0F6;H0YCU2 Q9H0F6 SHARPIN Sharpin 1 0 EAPAT(0.018)GPS(0.982)PQHPQK 78.441 0.018731 7709700 1632.4 1674 1843.3 1931.5 1818 1619.8 1591.1 1378.3 2027.6 1942 TRUE FALSE FALSE 1441.052547 1725.573956 1942.954374 2010.274919 1683.889762 1588.905014 1652.46926 1535.200101 1944.02147 1930.448898 0.746485726 0.893871865 1.006478015 1.041351015 0.872278859 0.823075408 0.856002592 0.795255499 1.007030786 1 10.91472065 -5.51692611 24.80754667 0.901516503 0.831196429 0.191309732 0.08801642 528.9651956 2204452.903 0.016547847 0.034000932 3.04E-06 5.51692611 -0.070320074 YDDYSS(ph)SRDGYGGSR ddPTM_HeLa_CUDC101_4h_R1 1 YDDYSSSRDGYGGSR 15 1 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 YDDY(0.067)S(0.067)S(0.431)S(0.431)RDGY(0.003)GGSR 64.675 0.029953 38141000 629.86 677.96 648.2 755.78 1045.3 1107.4 1183.9 1132.1 713.47 626.31 TRUE FALSE FALSE 556.0287656 698.847144 683.2436527 786.6039752 968.1903015 1086.27819 1229.56342 1260.973688 684.0604646 622.5846803 0.89309741 1.122493319 1.097430879 1.263448973 1.555114239 1.744787857 1.974933625 2.025385025 1.098742848 1 9.282126267 -5.51676663 0.786885112 0.950724309 2.103876849 0.970497282 0.067720632 0.073736039 0.07606361 0.010496148 0.051521047 3.04E-06 5.51676663 1.15315254 up EGLVFS(ph)RLSPEYYDLAR ddPTM_HeLa_CUDC101_4h_R1 2 EGLVFSRLSPEYYDLAR 17 1 P22749-2 P22749-2 1 0 EGLVFS(0.5)RLS(0.5)PEYYDLAR;EGLVFS(0.795)RLS(0.205)PEYYDLAR ; 71.344 0.013364 6690700 2062.72 1686.45 1824.71 1507.12 2104.13 2225.7 1810.02 2005.9 1563.21 1981.18 TRUE FALSE FALSE 1820.931088 1738.407526 1923.359342 1568.586868 1948.912522 2183.248481 1879.833078 2234.243548 1498.773822 1969.395853 0.924614056 0.882711072 0.976624044 0.796481248 0.98959918 1.108587934 0.954522715 1.134481696 0.761032283 1 10.94353741 -5.516505711 24.9969818 0.945118355 1.053790585 0.348113653 0.09147037 256.3722192 1005568.541 0.010309843 0.021228618 3.04E-06 5.516505711 0.10867223 SVPVNNLPERSPT(ph)DSPR ddPTM_HeLa_CUDC101_4h_R1 1 SVPVNNLPERSPTDSPR 17 1 P49454 P49454 CENPF Centromere protein F 1 0 SVPVNNLPERS(0.411)PT(0.568)DS(0.021)PR 247.91 1.07E-54 13113000 780.55 1034.7 719.21 1086.1 847.49 686.04 672.34 665.22 978.71 885.92 TRUE FALSE FALSE 689.0551122 1066.577881 758.0926681 1130.395853 784.9723511 672.95493 698.272379 740.9459559 938.3671596 880.6505084 0.782438783 1.211125038 0.860832601 1.283591892 0.891355133 0.764156636 0.792905213 0.841362094 1.065538656 1 9.78242578 -5.515264933 24.99501116 0.947949016 0.803640708 0.22650625 0.153796762 535.1745369 1756895.875 0.023383692 0.048436511 3.05E-06 5.515264933 -0.144308309 CPGNITEESHDSVY(ph)S(ph)S(ph)VT(ph)QNR ddPTM_HeLa_CUDC101_4h_R1 1 CPGNITEESHDSVYSSVTQNR 21 0 Q9P2P6 Q9P2P6 STARD9 StAR-related lipid transfer protein 9 4 0 CPGNIT(0.001)EES(0.001)HDS(0.204)VY(0.864)S(0.965)S(0.981)VT(0.984)QNR 46.862 0.026805 8845400 385.53 332.04 299.89 308.8 319.66 196.39 331.33 205.78 352.52 306.57 TRUE FALSE FALSE 340.3387578 342.2697588 316.1029605 321.3941987 296.0793187 192.644188 344.1095091 229.2051634 337.9889764 304.746508 1.11679297 1.123129387 1.037265242 1.054627995 0.971559348 0.632145678 1.129166373 0.75211744 1.10908236 1 8.251465879 -5.515134067 15.74196712 1.058680606 0.856096427 0.422201957 0.122279291 2.166760777 4400.455453 0.016354433 0.034186906 3.05E-06 5.515134067 -0.202584179 RKDDEDSFR ddPTM_HeLa_CUDC101_4h_R1 2 RKDDEDSFR 9 2 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 0 ; ; 78.264 0.02259 7766800 2006.89 1061.92 2712.1 2707.6 1710.55 1476.02 1740.04 723.37 2677 3761.3 FALSE FALSE TRUE 1771.645396 1094.636497 2858.72433 2818.027631 1584.366134 1447.867378 1807.153926 805.7155168 2566.652927 3738.92762 0.473837842 0.292767501 0.764584025 0.753699434 0.423748811 0.38724135 0.483334825 0.215493745 0.686467669 1 11.86840883 -13.52287874 0.212837575 3.697041482 0.395061655 0.31982958 0.191536 25.99835221 0.324809956 29.07893113 0.150433245 3.00E-14 13.52287874 -3.301979827 RKDPELWGSVLLESNPYR ddPTM_HeLa_CUDC101_4h_R1 2 RKDPELWGSVLLESNPYR 18 2 A0A087WVQ6;Q00610-2;Q00610 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 0 ; ; 104.16 0.00053694 43202000 10877.2 9383.9 9227.3 9994.4 11510.4 11064.6 10585.7 9182.8 9477 8580.4 FALSE FALSE TRUE 9602.191105 9673.006836 9726.155749 10402.01483 10661.30072 10853.56119 10993.99399 10228.13283 9086.354049 8529.363399 1.125780513 1.134083094 1.140314381 1.219553482 1.24995269 1.2724937 1.288958329 1.199167201 1.065302722 1 13.05822235 -7.298591454 0.300812636 0.980137796 1.298381993 0.83978392 0.03542807 0.322902196 0.096636202 0.034285377 0.037702657 5.03E-08 7.298591454 0.318244197 AS(ph)SPFR ddPTM_HeLa_CUDC101_4h_R1 2 ASSPFR 6 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 AS(0.879)S(0.121)PFR;AS(0.879)S(0.121)PFR ; 99.375 0.029787 487190000 4391.6 1409.85 3289.3 4111.6 2009.53 2112.4 2116.65 900.49 3734.9 4583.5 TRUE FALSE FALSE 3876.823305 1453.285807 3467.129508 4279.28882 1861.290975 2072.109489 2198.2899 1002.998142 3580.945841 4556.237138 0.850882688 0.318966235 0.760963357 0.939215561 0.408514948 0.45478526 0.482479255 0.220137388 0.785943693 1 12.15362712 -5.51454231 0.218832486 1.077465978 1.36E-17 0.452787903 0.194089324 3.547906213 0.258124703 0.241488716 1.093521645 3.06E-06 5.51454231 -1.077465978 RKEDEVEEWQHR ddPTM_HeLa_CUDC101_4h_R1 4 RKEDEVEEWQHR 12 2 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ;;; ;;; 88.155 0.0078076 669830000 27000.3 27727.1 26495.2 26941.1 27186.8 29182.1 27195 29215 24898.3 28533.3 FALSE FALSE TRUE 23835.36576 28581.33909 27927.61066 28039.87451 25181.28393 28625.50006 28243.92026 32540.71751 23871.98154 28363.58266 0.840351025 1.007677324 0.984629163 0.988587191 0.887803358 1.009234285 0.995781125 1.147271059 0.841641968 1 14.79175215 -1.000000059 0.722834346 0.935268598 31.72622281 0.511708346 0.061137402 213.7108006 0.967019621 0.011357998 10687.25598 0.099999986 1.000000059 30.79095422 S(ph)HSLSRPGPTEGDAEGEAEGPVGSTLGSYATLTR ddPTM_HeLa_CUDC101_4h_R1 1 SHSLSRPGPTEGDAEGEAEGPVGSTLGSYATLTR 34 1 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 S(0.304)HS(0.304)LS(0.304)RPGPT(0.088)EGDAEGEAEGPVGSTLGSYATLTR 56.977 0.00043675 5162600 646.86 450.37 534.19 406.78 665.37 768.38 641.99 658.29 517.48 525.65 TRUE FALSE FALSE 571.0360514 464.2453659 563.0699272 423.3702467 616.2869807 753.7244317 666.7517694 733.2270727 496.1492554 522.5234104 1.092843 0.88846807 1.077597512 0.810241681 1.179443769 1.442470168 1.27602277 1.403242531 0.94952541 1 9.029351865 -5.513281882 7.075444642 1.018981859 1.356568234 0.776868531 0.09529688 0.053783796 15.15700155 0.013131469 0.027934615 3.07E-06 5.513281882 0.337586375 EEAKESPS(ph)AAGPEDK ddPTM_HeLa_CUDC101_4h_R1 1 EEAKESPSAAGPEDK 15 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 EEAKES(0.313)PS(0.687)AAGPEDK 60.669 0.036615 11498000 3206.1 2421.1 2576.9 2725.4 2573.3 2598 2067.8 947.75 3035.9 3049.3 TRUE FALSE FALSE 2830.285818 2495.691221 2716.215009 2836.553592 2383.472786 2548.447479 2147.555739 1055.638029 2910.758917 3031.162628 0.933729452 0.823344547 0.89609676 0.93579723 0.786322965 0.840749175 0.708492418 0.348261759 0.960278043 1 11.56565554 -4.126136057 0.795675857 0.948728802 1.68E-39 0.872751725 0.06387651 0.771577832 0.304094675 0.011279811 0.678549379 7.48E-05 4.126136057 -0.948728802 down RKEPPDTTSSGDQK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 RKEPPDTTSSGDQKR 15 3 A0A0A0MQV9;Q9UPS6-2;Q9UPS6 A0A0A0MQV9 SETD1B Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase SETD1B 0 1 RKEPPDTTSSGDQK(1)R 60.209 0.027611 297280 287.07 189.12 302.74 232.22 268.54 164.65 276.29 305 220.88 187.24 FALSE TRUE FALSE 253.4200898 194.946563 319.1070401 241.6909353 248.7303392 161.5095756 286.9465979 339.7199671 211.7752329 186.1262882 1.361549152 1.047388657 1.71446518 1.298531968 1.336352547 0.867741882 1.541676894 1.825212175 1.137803988 1 7.540138023 -12.63706736 0.151149342 5.56E-25 1.504810475 0.205362603 0.263898829 59.07197991 0.778843293 18.5585415 0.650821689 2.31E-13 12.63706736 1.504810475 AMS(ph)TTSISSPQPGK ddPTM_HeLa_CUDC101_4h_R1 2 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-2;Q9UJU6-6;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 AMS(0.965)T(0.035)TSISSPQPGK;AMS(0.968)T(0.032)TSISSPQPGK ; 186.05 5.16E-11 69807000 4453.5 4204.8 3464.4 4309.6 8012.5 9761.6 9848 9736.2 3397.8 3782.4 TRUE FALSE FALSE 3931.467481 4334.344904 3651.695943 4485.364116 7421.433838 9575.413744 10227.84066 10844.52965 3257.741246 3759.902117 1.045630274 1.152781314 0.971221013 1.192947044 1.97383698 2.54671889 2.720241204 2.884258504 0.8664431 1 11.87647939 -5.512883884 1.586334715 1.024197571 2.803667772 0.987651374 0.085314611 0.0227998 0.112209228 0.010569838 0.030464747 3.07E-06 5.512883884 1.779470201 up RKEWTEEEDR ddPTM_HeLa_CUDC101_4h_R1 1 RKEWTEEEDR 10 2 Q5SXM2;A0A1B0GUB4 Q5SXM2 SNAPC4 snRNA-activating protein complex subunit 4 0 0 78.655 0.022299 3033200 1045.6 954.88 1204.8 970.39 952.4 926.02 897.78 983.29 1180.4 1073.7 FALSE FALSE TRUE 923.036353 984.298721 1269.935132 1009.966699 882.1433494 908.3577114 932.4076753 1095.223759 1131.743412 1067.313585 0.864822079 0.922220737 1.189842564 0.946269881 0.826508125 0.851069193 0.873602368 1.026149929 1.060366352 1 10.0597684 -5.966989794 23.67964045 0.955680888 0.8893398 0.129059952 0.100750664 223.6183791 160409.1436 0.015470941 0.028043274 1.08E-06 5.966989794 -0.066341088 KVEEEGS(ph)PGDPDHEASTQGR ddPTM_HeLa_CUDC101_4h_R1 4 KVEEEGSPGDPDHEASTQGR 20 1 Q9NZT2-2;Q9NZT2;A0A0A0MRN5 Q9NZT2-2 OGFR Opioid growth factor receptor 1 0 KVEEEGS(1)PGDPDHEASTQGR;KVEEEGS(0.999)PGDPDHEAS(0.001)TQGR;KVEEEGS(0.999)PGDPDHEAS(0.001)TQGR;KVEEEGS(0.702)PGDPDHEAS(0.149)T(0.149)QGR ;;; 169.8 4.56E-08 264796000 7291.03 5641.49 6086.76 5415.36 7013.34 7077 6266.5 6336.84 6762.04 6555.03 TRUE FALSE FALSE 6436.386516 5815.29762 6415.828657 5636.221788 6495.979881 6942.018016 6508.201004 7058.200251 6483.305849 6516.04039 0.987775724 0.892458805 0.984620762 0.864976497 0.996921365 1.065373693 0.99879691 1.083203883 0.994976314 1 12.66977983 -5.510249549 24.58811832 0.974902177 1.041934634 0.388264025 0.049281862 509.4197775 991800.899 0.007361282 0.015729193 3.09E-06 5.510249549 0.067032456 RKKWIIIAVSVVLVAIIALIIGLSVGK ddPTM_HeLa_CUDC101_4h_R1 1 RKKWIIIAVSVVLVAIIALIIGLSVGK 27 3 P32856 P32856 STX2 Syntaxin-2 0 0 2.1381 0.035948 229920 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 SSGS(ph)TTELHCVTDER ddPTM_HeLa_CUDC101_4h_R1 1 SSGSTTELHCVTDER 15 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 0 SS(0.001)GS(0.965)T(0.031)T(0.002)ELHCVTDER 123.63 0.00084212 5077800 1940 1699.3 1695.2 1831.6 2154.7 2382.8 2387.4 2109.8 2179.5 1576.5 TRUE FALSE FALSE 1712.596141 1751.653419 1786.84764 1906.300565 1995.752074 2337.35206 2479.482818 2349.971104 2089.660088 1567.122908 1.092828222 1.117751141 1.140208997 1.216433348 1.273513433 1.491492498 1.582187846 1.499544862 1.333437267 1 10.61390262 -5.510102952 0.633842983 1.036770964 1.634114436 0.697077465 0.102997955 0.167535168 0.102073022 0.009385587 0.054700573 3.09E-06 5.510102952 0.597343471 GSS(ph)PGPRPVEGTPASR ddPTM_HeLa_CUDC101_4h_R1 2 GSSPGPRPVEGTPASR 16 1 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 GS(0.223)S(0.777)PGPRPVEGTPASR;GSS(1)PGPRPVEGTPASR ; 177.04 1.31E-06 1472400000 9931.4 8907.1 9459 9071.2 9784.8 8056.4 8665.6 7926.9 9026.6 10022 TRUE FALSE FALSE 8767.256347 9181.517193 9970.382152 9441.162745 9062.994798 7902.737593 8999.835095 8829.266254 8654.519727 9962.388698 0.880035563 0.921618045 1.000802363 0.947680625 0.909721059 0.793257303 0.903381244 0.886259965 0.868719339 1 13.28227599 -5.509980495 8.216379207 0.944666301 0.862867433 0.316504978 0.048717929 0.155057684 70.66714304 0.007808983 0.016663572 3.09E-06 5.509980495 -0.081798868 APS(ph)PIDHPR ddPTM_HeLa_CUDC101_4h_R1 2 APSPIDHPR 9 0 Q8NAS9-2;Q8NAS9 Q8NAS9-2 C5orf17 Uncharacterized protein C5orf17 1 0 APS(1)PIDHPR;APS(1)PIDHPR ; 119.74 0.0036943 49900000 4977.9 4276 4612.3 4583 4667.2 3526.7 3428.8 4315.3 5206.4 4911.2 TRUE FALSE FALSE 4394.398108 4407.738492 4861.654889 4769.914549 4322.909954 3459.434073 3561.049965 4806.536309 4991.789988 4881.987964 0.900124732 0.902857304 0.995835083 0.977043488 0.885481485 0.708611758 0.729426207 0.984544891 1.022491253 1 12.25325302 -5.509208174 5.958531544 0.952079082 0.798617527 0.443137362 0.079003205 0.114510436 15.27546945 0.011142895 0.023994985 3.10E-06 5.509208174 -0.153461555 KLSNPDIFS(ph)STGK ddPTM_HeLa_CUDC101_4h_R1 1 KLSNPDIFSSTGK 13 1 Q6P0Q8;Q6P0Q8-2 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 KLS(0.052)NPDIFS(0.419)S(0.419)T(0.11)GK 112.71 0.0080056 32923000 1766.9 1722.4 1951 1961.6 1925 1655.6 1567.9 1671.1 1798.6 1993.1 TRUE FALSE FALSE 1559.78666 1775.465102 2056.476961 2041.602527 1782.996585 1624.022188 1628.374428 1861.331269 1724.460947 1981.244953 0.78727603 0.896136089 1.037972089 1.030464468 0.899937478 0.81969783 0.82189455 0.939475589 0.870392601 1 10.95219154 -5.507947924 24.21765661 0.918583927 0.857061132 0.134867778 0.079304657 1046.273136 1697042.331 0.014816303 0.032059571 3.10E-06 5.507947924 -0.061522795 RKQEELQQLEQQR ddPTM_HeLa_CUDC101_4h_R1 1 RKQEELQQLEQQR 13 2 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 101.39 0.0041504 6041300 2449.3 2032 2344.3 2670.1 2338.1 2425.8 2502.8 2272.3 2689 3037.5 FALSE FALSE TRUE 2162.196767 2094.603511 2471.039949 2778.998219 2165.623021 2379.531907 2599.333834 2530.969447 2578.158282 3019.432815 0.716093684 0.693707607 0.818378848 0.92037094 0.717228418 0.78807248 0.860868247 0.83822678 0.853855158 1 11.56006186 -9.41793379 1.153074647 0.99967891 0.788520338 0.238326539 0.079963372 0.297314576 0.708735116 0.049784613 0.012651281 3.82E-10 9.41793379 -0.211158572 KSSEAS(ph)PTAQR ddPTM_HeLa_CUDC101_4h_R1 1 KSSEASPTAQR 11 1 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 0 KS(0.001)S(0.002)EAS(0.962)PT(0.035)AQR 88.224 0.0019888 0 428.41 144.7 410.93 335.62 320.79 57.53 300.28 171.81 307.95 355.09 TRUE FALSE FALSE 378.1924292 149.1580355 433.1461188 349.3080343 297.1259608 56.4327111 311.8619002 191.3681559 295.2561707 352.9779089 1.071433706 0.422570455 1.227119624 0.989603104 0.841769282 0.159876042 0.883516765 0.54215335 0.836472094 1 8.463434085 -5.507759968 18.3889588 0.99369581 0.553482248 0.296929529 0.25989744 16.00749358 19468.09039 0.03448097 0.074363321 3.11E-06 5.507759968 -0.440213562 SDS(ph)YVELSQYR ddPTM_HeLa_CUDC101_4h_R1 1 SDSYVELSQYR 11 0 P52298-3;P52298;F8WE41 P52298-3 NCBP2 Nuclear cap-binding protein subunit 2 1 0 S(0.123)DS(0.876)YVELS(0.001)QYR 86.262 0.030146 2451300 939.94 1188.9 900.19 956.76 1241.1 1644.5 1124 1193 1694.2 1291.4 TRUE FALSE FALSE 829.7616581 1225.5286 948.8569943 995.7808083 1149.546526 1613.133902 1167.353057 1328.806298 1624.364359 1283.718695 0.646373431 0.95467068 0.739147134 0.775700168 0.895481642 1.256610119 0.909352696 1.03512265 1.265358497 1 10.32611338 -5.506594221 23.07204903 0.828165488 1.055391798 0.085935642 0.185100159 240.9160262 341330.1539 0.021908151 0.047679458 3.11E-06 5.506594221 0.227226311 TSSAVWNS(ph)PPLQGAR ddPTM_HeLa_CUDC101_4h_R1 1 TSSAVWNSPPLQGAR 15 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 T(0.036)S(0.001)S(0.001)AVWNS(0.963)PPLQGAR 148.7 0.00024996 16640000 1821.1 1648.2 1627.8 1500 1645.2 1359.3 1160.6 635.63 1693.3 2130 TRUE FALSE FALSE 1607.633419 1698.979088 1715.803792 1561.176484 1523.836874 1333.373617 1205.364731 707.9875499 1623.501457 2117.330665 0.759273667 0.802415568 0.810361754 0.737332392 0.719697163 0.629742741 0.569285068 0.334377413 0.766768027 1 11.04803088 -4.125476905 0.212916226 0.984292207 4.45E-26 0.745577073 0.083866608 4.249476547 0.160657785 0.081559482 1.13254475 7.49E-05 4.125476905 -0.984292207 down S(ph)KTPPPPPQTAQTK ddPTM_HeLa_CUDC101_4h_R1 3 SKTPPPPPQTAQTK 14 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.5)KT(0.5)PPPPPQTAQTK;S(0.5)KT(0.5)PPPPPQTAQTK;S(0.681)KT(0.319)PPPPPQTAQTK ;; 138.98 0.00031316 165337100 12475.1 10843.6 11066.3 11146.7 11605.5 10036.2 9395.8 9816.3 10862.2 11477.3 TRUE FALSE FALSE 11012.78769 11177.67846 11664.57765 11601.31061 10749.38539 9844.776206 9758.199153 10933.74791 10414.45552 11409.03251 0.965269201 0.979721852 1.022398494 1.016853147 0.942182028 0.862893168 0.855304702 0.958341376 0.912825475 1 13.47788884 -5.506051554 4.693209277 0.988101836 0.8895312 0.519620371 0.038819425 0.086697187 4.952730397 0.004554184 0.009973191 3.12E-06 5.506051554 -0.098570635 SPPPS(ph)PPTHR ddPTM_HeLa_CUDC101_4h_R1 2 SPPPSPPTHR 10 0 Q96HA1 Q96HA1 POM121 Nuclear envelope pore membrane protein POM 121 1 0 SPPPS(0.998)PPT(0.002)HR;SPPPS(0.958)PPT(0.042)HR ; 118.76 0.00032525 0 628.53 588.03 515.76 538.98 509.12 301.85 469.5 328.96 549.41 413.78 TRUE FALSE FALSE 554.8546662 606.1465073 543.6435457 560.9619341 471.5632319 296.0927142 487.6087723 366.4074767 526.7630873 411.3188182 1.348964943 1.473665878 1.321708421 1.363812958 1.146466466 0.719861823 1.18547645 0.890811362 1.280668581 1 8.684113268 -5.505887297 24.23327051 1.221291695 0.953354426 0.457457065 0.165890238 508.3072519 724948.5196 0.028850266 0.063051244 3.12E-06 5.505887297 -0.267937269 PVS(ph)VAGSPLSPGPVR ddPTM_HeLa_CUDC101_4h_R1 1 PVSVAGSPLSPGPVR 15 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 PVS(0.979)VAGS(0.017)PLS(0.004)PGPVR 134.4 0.00057689 25441000 1560 1211.4 1334.8 1460.1 1427.4 1179.1 1300.5 1068.8 1289.6 1308.6 TRUE FALSE FALSE 1377.139165 1248.721798 1406.963326 1519.649189 1322.103546 1156.610632 1350.660721 1190.467872 1236.442142 1300.816389 1.058672981 0.959952387 1.081600245 1.168227278 1.016364459 0.889142112 1.03831773 0.915169798 0.950512426 1 10.34520162 -5.50500223 24.67707 1.038231952 0.955976088 0.248535114 0.068843007 676.7718793 934227.1979 0.009152522 0.020072897 3.13E-06 5.50500223 -0.082255864 QPSS(ph)PGPTPR ddPTM_HeLa_CUDC101_4h_R1 3 QPSSPGPTPR 10 0 Q13424-2;Q13424 Q13424-2 SNTA1 Alpha-1-syntrophin 1 0 QPS(0.233)S(0.764)PGPT(0.002)PR;QPS(0.033)S(0.967)PGPTPR;QPS(0.217)S(0.781)PGPT(0.002)PR ;; 133.88 0.0018815 135769000 12006.7 10660.7 10608.8 11369.7 11073.5 9643.2 8953.1 8603.4 11586.8 11713.2 TRUE FALSE FALSE 10599.29283 10989.14353 11182.34382 11833.40551 10256.62997 9459.272027 9298.424066 9582.77628 11109.1872 11643.52937 0.91031615 0.943798327 0.960391258 1.016307439 0.880886683 0.812405906 0.798591542 0.823013021 0.954108231 1 13.50724081 -5.502811469 3.793583515 0.95940182 0.812149754 0.851565117 0.028670921 0.083286699 2.601292066 0.005647407 0.012646443 3.14E-06 5.502811469 -0.147252066 (ac)MEVAEPSSPT(ph)EEEEEEEEHSAEPRPR ddPTM_HeLa_CUDC101_4h_R1 2 MEVAEPSSPTEEEEEEEEHSAEPRPR 26 1 M0QXG9;M0R3F4;M0R2A4;M0R2K3;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8;M0R3H9 M0QXG9 BABAM1 BRISC and BRCA1-A complex member 1 1 0 MEVAEPS(0.162)S(0.162)PT(0.676)EEEEEEEEHSAEPRPR;MEVAEPS(0.203)S(0.203)PT(0.594)EEEEEEEEHSAEPRPR ; 68.634 3.71E-06 97625000 0 153.98 0 0 61.132 193.123 125.12 0 0 68.084 TRUE FALSE FALSE 0 158.7239413 0 0 56.62241415 189.4395005 129.9459203 0 0 67.67903334 0 2.345245395 0 0 0.836631544 2.799086973 1.920032156 0 0 1 6.080637057 -5.502037327 24.20729494 0.584352224 1.642759167 0.189536152 0.935521775 607.7809953 705935.9245 0.130425153 0.288440767 3.15E-06 5.502037327 1.058406943 RNSNS(ph)PPSPSSMNQR ddPTM_HeLa_CUDC101_4h_R1 1 RNSNSPPSPSSMNQR 15 1 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 RNS(0.006)NS(0.987)PPS(0.007)PSSMNQR 90.379 0.0059296 4531300 233.41 182.86 320.38 268.07 463.93 389.54 413.95 460.22 386.72 355.68 TRUE FALSE FALSE 206.0500336 188.4936999 337.7007119 279.0030533 429.7068082 382.1101735 429.9161902 512.6095845 370.7792379 353.5643995 0.582779358 0.533124093 0.955132113 0.789115232 1.215356548 1.080737127 1.215948751 1.449833708 1.0486894 1 8.465829207 -5.499152543 1.091765167 0.780358792 1.324615678 0.559390453 0.18070447 0.329774998 0.726371339 0.03253325 0.123119958 3.17E-06 5.499152543 0.544256886 STIFIS(ph)PSSVK ddPTM_HeLa_CUDC101_4h_R1 1 STIFISPSSVK 11 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 S(0.005)TIFIS(0.939)PS(0.021)S(0.035)VK 171.26 8.01E-07 58343000 2924.3 2494.9 2028.2 2217 2804.8 2287.1 1613.8 1028.7 2537.2 2680.3 TRUE FALSE FALSE 2581.517987 2571.764912 2137.850627 2307.418843 2597.895492 2243.477378 1676.044807 1145.80305 2432.615542 2664.357456 0.968908275 0.965247702 0.802388817 0.86603201 0.975055162 0.842033179 0.629061541 0.430048546 0.913021463 1 11.37957194 -4.124165856 0.778332879 0.969949737 5.63E-22 0.860591082 0.064251027 0.748919188 0.281081862 0.010990351 0.660428661 7.51E-05 4.124165856 -0.969949737 down EFDGKS(ph)LVSVTK ddPTM_HeLa_CUDC101_4h_R1 1 EFDGKSLVSVTK 12 1 P08238;Q58FF7;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 1 0 EFDGKS(1)LVSVTK 127.03 0.010902 15599000 1617 1561 1565.1 1501.6 1850.7 1517 1814.1 1550.9 1607 1496.8 TRUE FALSE FALSE 1427.457711 1609.09256 1649.71404 1562.841738 1714.177548 1488.065752 1884.070445 1727.448187 1540.75878 1487.896967 0.959379408 1.081454291 1.108755564 1.050369598 1.152080813 1.000113439 1.266264054 1.160999871 1.035527872 1 10.53905891 -5.498988453 0.414161242 0.976634103 1.238494826 0.408854816 0.067661618 1.220994023 0.277037821 0.020272354 0.136311891 3.17E-06 5.498988453 0.261860723 KDTDDIES(ph)PKR ddPTM_HeLa_CUDC101_4h_R1 1 KDTDDIESPKR 11 2 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;Q9UPQ0-2;G5EA03;Q9UPQ0-5;Q9UPQ0-4;D6RD46;D6RJ93;D6R8Y0;Q9UPQ0-7;D6RGH8 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 KDTDDIES(1)PKR 116.79 0.0042066 390310000 5223.2 5045 4647.4 4772.4 5142.6 4321.8 4184.4 4495.6 5288.2 5103.4 TRUE FALSE FALSE 4610.944414 5200.43047 4898.652502 4967.0391 4763.240644 4239.368866 4345.79371 5007.360932 5070.218158 5073.04475 0.908910653 1.025110309 0.965623751 0.979104137 0.938931328 0.835665577 0.856644072 0.987052387 0.999442821 1 12.30863617 -5.498331416 12.43308523 0.96357571 0.88909773 0.368670563 0.048100559 1.421496507 717.295942 0.007350909 0.016137063 3.17E-06 5.498331416 -0.074477979 RAEVLGHKT(ph)PEPAPR ddPTM_HeLa_CUDC101_4h_R1 1 RAEVLGHKTPEPAPR 15 2 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7ER34;K7EJ51 Q9UHD8-7 9-Sep Septin-9 1 0 RAEVLGHKT(1)PEPAPR 75.764 0.010163 21248000 3003.5 2604.4 2491.1 2505 2797.4 1925 2446.3 2558.6 2526.4 2626.3 TRUE FALSE FALSE 2651.434283 2684.638477 2625.776401 2607.164728 2591.041375 1888.283832 2540.65461 2849.860682 2422.260723 2610.678651 1.015611126 1.028329732 1.005783075 0.998654019 0.992478095 0.723292325 0.97317784 1.091616803 0.927827989 1 11.35020917 -5.496473055 24.99674241 1.008090931 0.921100776 0.094378308 0.088308587 948.7253185 898102.6566 0.011597205 0.025853166 3.19E-06 5.496473055 -0.086990154 MT(ph)STNLALVFGSALLK ddPTM_HeLa_CUDC101_4h_R1 1 MTSTNLALVFGSALLK 16 0 Q6ZRI8-3;Q6ZRI8-5;Q6ZRI8-2;Q6ZRI8-4;Q6ZRI8 Q6ZRI8-3 ARHGAP36 Rho GTPase-activating protein 36 1 0 MT(0.693)S(0.154)T(0.154)NLALVFGSALLK 56.527 0.029676 7194800 2787.9 2743.6 2532.6 2541.6 3139.7 2714.4 2693.9 2690.9 3052.1 2666.4 TRUE FALSE FALSE 2461.106588 2828.127064 2669.520017 2645.257434 2908.090586 2662.627342 2797.804625 2997.221179 2926.291146 2650.540134 0.92853021 1.067000279 1.00716076 0.998006934 1.097169044 1.004560281 1.055560182 1.130796376 1.104035781 1 11.37207067 -5.495901744 0.503117268 0.969327758 1.110715707 0 0.060595921 1.142582776 0.39939945 0.01172719 0.077642639 3.19E-06 5.495901744 0.14138795 ENS(ph)REALAEAALESPRPALVR ddPTM_HeLa_CUDC101_4h_R1 1 ENSREALAEAALESPRPALVR 21 2 O14745;O14745-2 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 0 ENS(1)REALAEAALESPRPALVR 45.679 0.031532 5719400 676.18 528.27 553.33 750.14 651.48 437.52 522.35 540.32 873.51 635.79 TRUE FALSE FALSE 596.9192054 544.5453725 583.2446935 780.7339516 603.4216183 429.175035 542.4972145 601.8278448 837.5035481 632.0082928 0.944480021 0.861611119 0.922843419 1.235322322 0.954768514 0.679065512 0.858370405 0.952246753 1.325146454 1 9.303799678 -5.495269683 24.70400354 0.980690324 0.830104336 0.22080092 0.155315201 627.8502639 561786.4826 0.015755876 0.035145292 3.20E-06 5.495269683 -0.150585988 RLDEEEEDNEGGEWER ddPTM_HeLa_CUDC101_4h_R1 1 RLDEEEEDNEGGEWER 16 1 Q99613-2;Q99613 Q99613-2 EIF3C Eukaryotic translation initiation factor 3 subunit C 0 0 246.66 1.16E-55 112360000 1664.1 1579.1 1249.4 1607.9 1554.2 1629.9 1331.9 1819.7 1448.9 1636.7 FALSE FALSE TRUE 1469.036721 1627.750199 1316.946343 1673.477112 1439.549762 1598.812373 1383.271829 2026.847293 1389.175729 1626.964836 0.902930837 1.000482717 0.809449789 1.028588372 0.884806931 0.98269633 0.850216181 1.245784327 0.853844962 1 10.66796735 -4.250265644 24.90561057 0.94379167 1.245784512 0.61948738 0.074243278 741.5557777 1652853.204 0.008917867 0.182071098 5.62E-05 4.250265644 0.301992842 RLDEELEDAEK ddPTM_HeLa_CUDC101_4h_R1 2 RLDEELEDAEK 11 1 Q15008;Q15008-4;C9J0E9;Q15008-3;Q15008-2;C9J7B7 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 0 ; ; 205.31 1.86E-17 31293000 14977.7 11288.4 12115.8 11493.7 11980.5 11617.1 10885.6 10477.2 12620.8 15296.1 FALSE FALSE TRUE 13222.03671 11636.18222 12770.8168 11962.46277 11096.72238 11395.52317 11305.46124 11669.8821 12100.56528 15205.11812 0.869578033 0.76528062 0.839902505 0.78673922 0.729801788 0.749453117 0.743529985 0.767496971 0.795821853 1 13.8922694 -7.924326858 0.393104432 1.016786606 0.735011604 0.22844408 0.067660278 0.203197801 0.082411415 0.022872488 0.014170054 1.19E-08 7.924326858 -0.281775001 RLDEELEDAEKNLGESEIR ddPTM_HeLa_CUDC101_4h_R1 2 RLDEELEDAEKNLGESEIR 19 2 Q15008;Q15008-4;C9J0E9;Q15008-3;Q15008-2;C9J7B7 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 0 ; ; 109.07 0.00016521 8656500 3848.4 3768.4 3203.6 3271.3 4215.5 3999.4 3883 3492.3 4325.5 2946.1 FALSE FALSE TRUE 3397.296386 3884.499937 3376.796306 3404.717754 3904.530963 3923.118108 4032.768611 3889.849316 4147.201059 2928.576466 1.160050429 1.326412331 1.153050414 1.16258455 1.333252182 1.339599001 1.377040572 1.328238945 1.416114999 1 11.51598385 -7.174890365 0.086404884 0.597013724 1.782727401 0 0.145032337 4.181357969 0.303922255 1.930929462 2.083437292 6.69E-08 7.174890365 1.185713677 RLDEYTQEEIDAFPR ddPTM_HeLa_CUDC101_4h_R1 1 RLDEYTQEEIDAFPR 15 1 H0YAX3;E5RJI7;Q9BYD1 H0YAX3 MRPL13 "39S ribosomal protein L13, mitochondrial" 0 0 153.79 0.00014836 5971900 1047.8 1053.4 1030.9 1116.5 994.66 963.62 817.48 1078.4 1038.3 1240.6 FALSE FALSE TRUE 924.9784724 1085.854005 1086.633572 1162.035696 921.2859134 945.240554 849.0104774 1201.160697 995.5008345 1233.220856 0.750050948 0.880502466 0.881134605 0.942277038 0.747056708 0.766481161 0.688449659 0.974002906 0.807236457 1 10.26821548 -9.465312684 1.135447507 1.00258527 0.818920975 0 0.105268606 0.441941923 0.99594503 0.065531342 0.015256527 3.43E-10 9.465312684 -0.183664295 RLDFDYK ddPTM_HeLa_CUDC101_4h_R1 1 RLDFDYK 7 1 Q99961-3;Q99961-2;Q99961;Q99962;M0R0I3 Q99961-3 SH3GL1;SH3GL2 Endophilin-A2;Endophilin-A1 0 0 104.06 0.017994 11888000 4746 4483 4090.6 4293.2 4303.5 4171.8 3478.8 3856.4 4383.5 3615.6 FALSE FALSE TRUE 4189.681074 4621.115916 4311.750209 4468.295253 3986.039379 4092.229866 3612.978481 4295.396988 4202.810275 3594.09425 1.165712634 1.285752569 1.199676444 1.243232632 1.109052546 1.138598373 1.005254239 1.195126418 1.169365626 1 11.81141253 -9.005917127 0.943084155 1.00569903 1.164860751 0 0.088239871 0.425128535 0.718744392 0.0419946 0.014879004 9.86E-10 9.005917127 0.159161722 RLDLPIER ddPTM_HeLa_CUDC101_4h_R1 1 RLDLPIER 8 1 B4E1E0;P17812-2;P17812;A0A3B3IRI2;A0A3B3ISY3;A0A3B3ITB8;A0A3B3IRQ8;A0A3B3ITF6 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 0 0 89.886 0.030826 15026000 5786.4 4391.2 4635.9 4664 5550.1 5318.3 4818.1 5471 4785.7 3780.5 FALSE FALSE TRUE 5108.126964 4526.487667 4886.530777 4854.21808 5140.68018 5216.862288 5003.935731 6093.796525 4588.43142 3758.013418 1.359262567 1.204489491 1.300296256 1.291697911 1.367924914 1.388196823 1.331537484 1.621547304 1.220972602 1 11.8757545 -12.69087316 0.153285545 1.28E-15 1.489190954 0.502853805 0.105760563 19.77494841 0.259837298 6.260921203 0.203388808 2.04E-13 12.69087316 1.489190954 RLDQLER ddPTM_HeLa_CUDC101_4h_R1 4 RLDQLER 7 1 M0R2F5;Q96CT7 M0R2F5 CCDC124 Coiled-coil domain-containing protein 124 0 0 ;;; ;;; 134.48 0.0013745 3906800 4470.47 3756.73 3648.38 3421.23 3860.3 3392.68 3679.33 3647.08 3534.12 3613.28 FALSE FALSE TRUE 3946.448283 3872.470398 3845.622459 3560.762547 3575.53336 3327.970282 3821.242991 4062.248845 3388.442078 3591.78805 1.098741972 1.078145577 1.070670765 0.991362101 0.995474485 0.926549739 1.063883207 1.130982338 0.943385865 1 11.8104865 -6.269168481 24.55588804 1.052317047 1.017259058 0 0.064994245 1069.54742 3398016.844 0.009757147 0.015086908 5.38E-07 6.269168481 -0.035057989 GPSPSS(ph)PTPPAAAAPAEQAPR ddPTM_HeLa_CUDC101_4h_R1 2 GPSPSSPTPPAAAAPAEQAPR 21 0 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 GPSPS(0.206)S(0.792)PT(0.002)PPAAAAPAEQAPR;GPS(0.001)PS(0.009)S(0.987)PT(0.002)PPAAAAPAEQAPR ; 297.87 1.51E-125 74821000 4408.4 3756.2 3672.9 3751.7 4122.1 3261.8 3184 3801.7 4100.2 3881.4 TRUE FALSE FALSE 3891.654035 3871.92407 3871.468084 3904.710542 3818.020895 3199.5866 3306.807947 4234.470161 3931.188021 3858.31326 1.008641282 1.003527658 1.003409475 1.012025276 0.989557 0.82927082 0.857060514 1.097492577 1.018887725 1 11.91375457 -5.495126274 24.38636822 1.004419 0.918946651 0.220918647 0.066375195 522.0527769 458732.1414 0.008723013 0.019458258 3.20E-06 5.495126274 -0.085472349 VDIDT(ph)PDINIEGSEGK ddPTM_HeLa_CUDC101_4h_R1 4 VDIDTPDINIEGSEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VDIDT(1)PDINIEGSEGK;VDIDT(1)PDINIEGSEGK;VDIDT(1)PDINIEGSEGK;VDIDT(1)PDINIEGSEGK ;;; 163.91 0.00016518 182062000 27390.4 15918.3 16082.6 18109.1 17019.1 12947.6 10705.2 9932.9 15899.9 17757.8 TRUE FALSE FALSE 24179.73883 16408.72396 16952.074 18847.66737 15763.6349 12700.6461 11118.10315 11063.62119 15244.49939 17652.17582 1.369788013 0.929558153 0.960339064 1.067724884 0.893013703 0.719494652 0.629843214 0.626756798 0.863604552 1 14.1075584 -5.494972976 0.771433282 1.158412038 0.565367145 0.500867057 0.148965871 0.411958598 0.401588094 0.028837778 0.147667582 3.20E-06 5.494972976 -0.593044893 AGGGGGLGAGS(ph)PALSGGQGR ddPTM_HeLa_CUDC101_4h_R1 2 AGGGGGLGAGSPALSGGQGR 20 0 A0A3B3ITT1;Q6IQ22 A0A3B3ITT1 RAB12 Ras-related protein Rab-12 1 0 AGGGGGLGAGS(1)PALSGGQGR;AGGGGGLGAGS(0.996)PALS(0.004)GGQGR ; 253.34 2.81E-57 147952000 11396.4 7938.8 8385.9 7830.5 9310.8 7811.3 7560 6264.9 7841.3 8683.1 TRUE FALSE FALSE 10060.53127 8183.385018 8839.26712 8149.861636 8623.960834 7662.312467 7851.591732 6978.070892 7518.078295 8631.452535 1.165566424 0.948088979 1.024076433 0.944205115 0.999132046 0.887719933 0.90964895 0.808446882 0.871009632 1 13.07538765 -5.493624076 0.636913085 1.071640253 0.823886653 0.158901532 0.086206781 0.654756883 0.400540732 0.015049986 0.089204091 3.21E-06 5.493624076 -0.247753601 RLDVFEK ddPTM_HeLa_CUDC101_4h_R1 2 RLDVFEK 7 1 A0A087WW66;Q99460-2;Q99460;H7BZR6;C9J9M4 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 0 ; ; 124.08 0.011994 22850000 8554.1 7276.7 6306.6 6883.7 8208.5 6670.5 6562.4 6804.7 7268.6 6940.5 FALSE FALSE TRUE 7551.401365 7500.886502 6647.553872 7164.44704 7602.975309 6543.271326 6815.513966 7579.319542 6968.985231 6899.217597 1.094530106 1.087208281 0.96352286 1.038443409 1.102005438 0.948407734 0.987867663 1.098576677 1.010112398 1 12.75221705 -6.797637484 24.99975509 1.049079145 1.022417743 0.046774741 0.054751997 483.7728532 334109.7685 0.009554833 0.012557753 1.59E-07 6.797637484 -0.026661401 RPS(ph)VGSQSNQAGQGK ddPTM_HeLa_CUDC101_4h_R1 2 RPSVGSQSNQAGQGK 15 1 Q9UPP1-4;Q9UPP1-3;Q9UPP1-2;Q9UPP1;H0Y3N9 Q9UPP1-4 PHF8 Histone lysine demethylase PHF8 1 0 RPS(0.902)VGS(0.097)QS(0.001)NQAGQGK;RPS(0.998)VGS(0.002)QSNQAGQGK ; 152.86 8.63E-05 13749100 5785.2 4913.6 5913.8 6786.2 7919.5 7881.3 8052 8354.2 5096.9 6132.9 TRUE FALSE FALSE 5107.067626 5064.982192 6233.517916 7062.970568 7335.294263 7730.977334 8362.568337 9305.208359 4886.803625 6096.421238 0.837715674 0.830812372 1.022488059 1.158543725 1.20321316 1.268117315 1.371717605 1.52633947 0.801585624 1 12.57374688 -5.493242916 0.791246408 0.914671457 1.489456863 0.890951352 0.077036062 0.223021302 0.230981618 0.015608097 0.078403633 3.21E-06 5.493242916 0.574785406 RLEEPEEPK ddPTM_HeLa_CUDC101_4h_R1 1 RLEEPEEPK 9 1 O75822-2;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 0 0 83.883 0.038999 10867000 2394 2176.6 2700.2 2567.7 2324.2 2588.9 2780.2 2387.8 2798.5 2764 FALSE FALSE TRUE 2113.378949 2243.658466 2846.18098 2672.421905 2152.748396 2539.521046 2887.433245 2659.6175 2683.144646 2747.559605 0.769184022 0.81660047 1.035894171 0.972652932 0.783512901 0.924282422 1.050908319 0.967992649 0.976555573 1 11.42393506 -6.770906694 24.99793603 0.882377853 0.951685767 0.10226409 0.093015433 415.1817973 1096263.833 0.018360549 0.024304513 1.69E-07 6.770906694 0.069307913 RLEEPSLR ddPTM_HeLa_CUDC101_4h_R1 2 RLEEPSLR 8 1 O00429-7;O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 O00429-7 DNM1L Dynamin-1-like protein 0 0 ; ; 143.37 0.0044304 9795600 3665.1 3780.5 3777 3306.4 3569 3488.5 3280.2 3212.1 3733.9 3722.4 FALSE FALSE TRUE 3235.482534 3896.972724 3981.196045 3441.249283 3305.72198 3421.962675 3406.718413 3577.75248 3579.987062 3700.258999 0.874393532 1.05316215 1.075923617 0.930002274 0.893375837 0.924790042 0.920670259 0.966892448 0.967496346 1 11.85341054 -3.879436346 17.23290781 0.949962453 2.992547741 0 0.063348547 1237.182185 171643.0341 0.009884549 2921.712174 0.000131997 3.879436346 2.042585288 RLEEWLGR ddPTM_HeLa_CUDC101_4h_R1 2 RLEEWLGR 8 1 P56192;P56192-2 P56192 MARS "Methionine--tRNA ligase, cytoplasmic" 0 0 ; ; 91.867 0.028093 35719000 6741.5 5501.4 5189.4 5643.6 6400.2 5878.4 5498.2 5401.5 5830.7 4633.5 FALSE FALSE TRUE 5951.271589 5670.891613 5469.954661 5873.770402 5928.069997 5766.279314 5710.267416 6016.384926 5590.356078 4605.939736 1.292086291 1.231212725 1.18758711 1.275259934 1.287048971 1.25192244 1.239761643 1.30622311 1.213727578 1 12.16927982 -9.334346501 0.741801138 0.973462719 1.2604466 0.234739847 0.073443787 0.210726678 0.176647641 0.038253487 0.007118907 4.63E-10 9.334346501 0.286983881 QGNFFAS(ph)PMLK ddPTM_HeLa_CUDC101_4h_R1 1 QGNFFASPMLK 11 0 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 QGNFFAS(1)PMLK 81.494 0.036817 31928000 1039.1 971.01 687.75 923.1 927.64 943.27 766.65 322.99 1102 999.5 TRUE FALSE FALSE 917.2982732 1000.925667 724.9318453 960.748008 859.2098453 925.2786963 796.2199473 359.757876 1056.575094 993.5549295 0.923248676 1.007418551 0.72963439 0.966980264 0.864783435 0.931280867 0.80138493 0.362091582 1.063428968 1 9.95645592 -4.12363762 1.700817211 0.942739758 6.61E-09 0.798842945 0.086429645 0.406135696 0.860204662 0.011259391 0.691357195 7.52E-05 4.12363762 -0.942739752 down LSQMQS(ph)PIPLTETR ddPTM_HeLa_CUDC101_4h_R1 2 LSQMQSPIPLTETR 14 0 H3BSW6;Q2VPK5-3;Q2VPK5;Q2VPK5-5 H3BSW6 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 1 0 LS(0.005)QMQS(0.995)PIPLTETR;LS(0.017)QMQS(0.957)PIPLT(0.016)ET(0.01)R ; 106.19 0.0044967 22265000 3438.7 3118.5 2886.8 3070.4 3035.2 2407.5 2369.9 2261.4 3322.8 3171.2 TRUE FALSE FALSE 3035.620799 3214.577289 3042.86914 3195.624183 2811.299343 2361.580949 2461.307837 2518.828635 3185.832778 3152.337561 0.962974535 1.019743992 0.96527389 1.013731595 0.891814182 0.749152305 0.780788158 0.799035188 1.010625517 1 11.62220632 -5.492812348 3.403410217 0.985505577 0.777929094 0.945622155 0.023462621 0.038002712 0.90392815 0.003374062 0.007710681 3.22E-06 5.492812348 -0.207576483 RAS(ph)ISEPSDTDPEPR ddPTM_HeLa_CUDC101_4h_R1 2 RASISEPSDTDPEPR 15 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 RAS(0.993)IS(0.007)EPSDTDPEPR;RAS(1)ISEPSDTDPEPR ; 252.1 9.39E-56 127165000 3445.6 2298.82 2564.43 2577 2744 2353.47 1890.8 1939.82 2708.2 3202.3 TRUE FALSE FALSE 3041.711991 2369.643919 2703.070843 2682.101199 2541.580587 2308.581481 1963.728789 2160.641268 2596.56685 3183.252577 0.955535861 0.744409645 0.849153744 0.842566254 0.798422533 0.72522724 0.616893803 0.678752696 0.815696143 1 11.63628592 -5.489614006 0.280199137 1.024792076 0.494085234 0.488316389 0.080137373 1.21976844 0.129813375 0.037700034 0.215296332 3.24E-06 5.489614006 -0.530706842 IQPAGNTS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 IQPAGNTSPR 10 0 H0Y5S9;H0Y682;P49674 H0Y5S9 CSNK1E Casein kinase I isoform epsilon 1 0 IQPAGNT(0.008)S(0.992)PR;IQPAGNT(0.013)S(0.987)PR;IQPAGNT(0.033)S(0.967)PR ;; 131.42 0.0021282 783420000 22631.2 18448.9 19500.7 19029.8 19725.9 16526 17013.8 15313.3 17340.4 17844.5 TRUE FALSE FALSE 19978.40504 19017.28874 20554.96683 19805.9175 18270.75966 16210.79408 17670.02797 17056.50417 16625.62137 17738.36012 1.126282526 1.072099597 1.158786195 1.116558541 1.030014022 0.913883469 0.996147775 0.961560373 0.937269356 1 14.11458502 -5.48893341 6.052631429 1.073938939 0.962052102 0.383455423 0.062775567 0.146046203 15.95051567 0.008711789 0.019200759 3.24E-06 5.48893341 -0.111886837 RLGSGPDRELRK ddPTM_HeLa_CUDC101_4h_R1 1 RLGSGPDRELRK 12 3 Q6NUJ5-2;Q6NUJ5 Q6NUJ5-2 PWWP2B PWWP domain-containing protein 2B 0 0 98.04 0.015416 0 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 TATPPGYKPGS(ph)PPSFR ddPTM_HeLa_CUDC101_4h_R1 1 TATPPGYKPGSPPSFR 16 1 P54259 P54259 ATN1 Atrophin-1 1 0 TAT(0.001)PPGY(0.003)KPGS(0.964)PPS(0.032)FR 64.5 0.025991 65855000 2279.4 1987.8 1800.9 1747.4 2005.8 1476.2 1718.8 1531.3 2171.1 1770.7 TRUE FALSE FALSE 2012.212187 2049.041762 1898.262101 1818.666525 1857.83613 1448.043945 1785.094692 1705.617002 2081.606339 1760.167798 1.143193388 1.164117287 1.078455193 1.033234745 1.055488081 0.822673808 1.014161658 0.969008185 1.182618124 1 10.78149725 -5.487178912 21.53422039 1.074723993 0.9424876 0.493303357 0.071996649 88.79697605 53561.68553 0.010760733 0.024042263 3.26E-06 5.487178912 -0.132236393 TPEELDDS(ph)DFETEDFDVR ddPTM_HeLa_CUDC101_4h_R1 7 TPEELDDSDFETEDFDVR 18 0 G3XAM7;P35221-3;P35221;P35221-2 G3XAM7 CTNNA1 Catenin alpha-1 1 0 TPEELDDS(0.726)DFET(0.274)EDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR;TPEELDDS(1)DFETEDFDVR ;;;;;; 310.46 1.21E-144 2048351300 8325.3 7809.18 6937.73 7102.17 7689.09 6608.55 6052.77 6613.03 7295.51 7377.11 TRUE FALSE FALSE 7349.420954 8049.77158 7312.804669 7391.827191 7121.88115 6482.502919 6286.227366 7365.830604 6994.78599 7333.230622 1.002207804 1.097711499 0.997214604 1.007990553 0.971179214 0.883990052 0.857224829 1.004445514 0.953847813 1 12.8402332 -5.485049761 3.606767528 1.009003882 0.91000929 0.428535618 0.048652744 0.146135501 3.922553458 0.006360394 0.014490745 3.27E-06 5.485049761 -0.098994592 SFSKEELMSS(ph)DLEETAGSTSIPKR ddPTM_HeLa_CUDC101_4h_R1 1 SFSKEELMSSDLEETAGSTSIPKR 24 2 O00567 O00567 NOP56 Nucleolar protein 56 1 0 S(0.015)FS(0.013)KEELMS(0.351)S(0.611)DLEET(0.008)AGSTSIPKR 53.359 0.0092404 25879000 497.56 517.77 770.4 555.81 912.81 810.07 843.21 901.75 725.17 674.95 TRUE FALSE FALSE 439.2367711 533.72188 812.0501543 578.4783342 845.4738249 794.6192644 875.7328922 1004.401575 695.2781857 670.9353674 0.654663314 0.795489262 1.210325456 0.862196811 1.260141984 1.184345472 1.305241808 1.497016887 1.036281912 1 9.390029985 -5.484011455 0.742913856 0.838719551 1.4537766 0.585034136 0.158127727 0.463331364 0.410350208 0.031726667 0.169780027 3.28E-06 5.484011455 0.615057049 RLLEDGEDFNLGDALDSSNSMQTIQK ddPTM_HeLa_CUDC101_4h_R1 1 RLLEDGEDFNLGDALDSSNSMQTIQK 26 1 P05783 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 106.99 1.44E-07 20062000 1146.2 1113.7 1020.7 909.03 1281.1 1098.4 1015.5 1147.9 1145.6 880.97 FALSE FALSE TRUE 1011.844174 1148.011777 1075.882129 946.1041726 1186.595805 1077.44985 1054.668175 1278.572296 1098.377883 875.7299513 1.155429447 1.310919851 1.228554679 1.080360642 1.354979128 1.230344867 1.204330369 1.460007499 1.254242682 1 9.774342244 -12.82796795 0.05732561 1.31E-12 1.737501261 0.080605493 0.120193144 140.7546055 0.723456834 21.88718365 5.30403542 1.49E-13 12.82796795 1.737501261 ANASNSPS(ph)SLR ddPTM_HeLa_CUDC101_4h_R1 1 ANASNSPSSLR 11 0 Q5T5X7 Q5T5X7 BEND3 BEN domain-containing protein 3 1 0 ANAS(0.002)NS(0.26)PS(0.719)S(0.019)LR 147.96 0.0008465 14585000 2548.7 2182.6 2174.9 2424.3 2611.7 2795.1 2616.9 2377.3 2502.9 2490.1 TRUE FALSE FALSE 2249.94525 2249.843319 2292.481673 2523.173433 2419.040094 2741.788124 2717.83471 2647.922223 2399.729403 2475.288774 0.908962733 0.908921554 0.926147162 1.01934508 0.977275912 1.107663943 1.097986925 1.069742751 0.969474522 1 11.27338113 -5.482411034 1.623003479 0.951321996 1.095058479 0.739503815 0.036052267 0.180959713 0.928083598 0.006819991 0.019894405 3.29E-06 5.482411034 0.143736483 RLPDAHSDYAR ddPTM_HeLa_CUDC101_4h_R1 2 RLPDAHSDYAR 11 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 0 0 ; ; 109.16 0.0049434 13860900 1606.47 1365.22 1561.66 1409.53 1422.1 1415.2 1504.46 1158.56 1273.45 1237.07 FALSE FALSE TRUE 1418.162022 1407.28081 1646.088063 1467.016726 1317.194516 1388.207418 1562.487526 1290.445787 1220.957852 1229.711853 1.15324742 1.144398834 1.338596566 1.192975999 1.071140783 1.128888377 1.270612723 1.049388753 0.992881259 1 10.26410459 -8.825621151 0.742908843 1.001398267 1.174042292 0.410755557 0.081774715 0.532500131 0.558476708 0.050226107 0.017526553 1.49E-09 8.825621151 0.172644025 LS(ph)PGESAYQK ddPTM_HeLa_CUDC101_4h_R1 2 LSPGESAYQK 10 0 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 0 LS(0.999)PGES(0.001)AYQK;LS(1)PGESAYQK ; 163.45 3.90E-05 443470000 10607.7 9174.7 8911.2 8990.3 8633.2 7425.2 6811.8 6021.9 7964.5 8952.5 TRUE FALSE FALSE 9364.281486 9457.361632 9392.966427 9356.963293 7996.346036 7283.576681 7074.533408 6707.408755 7636.199939 8899.250132 1.052255117 1.062714441 1.055478415 1.051432779 0.898541553 0.818448361 0.794958373 0.753704936 0.85807229 1 13.11946806 -5.477282429 2.116357779 1.032984364 0.782647094 0.730734773 0.060440028 0.057514763 0.505777172 0.004578945 0.011869023 3.33E-06 5.477282429 -0.250337271 RLPQFDDDADTGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 RLPQFDDDADTGKK 14 2 O43257 O43257 ZNHIT1 Zinc finger HIT domain-containing protein 1 0 1 ; RLPQFDDDADTGK(1)K;RLPQFDDDADTGK(1)K 175.6 2.59E-07 3342100 1797.2 1841.91 2463.9 2421.3 2608.9 2381 2222.92 2422.79 1330.78 1222.36 FALSE TRUE FALSE 1586.53494 1898.657064 2597.105887 2520.05108 2416.446645 2335.586392 2308.658769 2698.59062 1275.924685 1215.089348 1.305694057 1.562565803 2.137378531 2.0739636 1.988698731 1.922151976 1.899990953 2.220898919 1.050066554 1 10.24684669 -7.154349978 1.454214229 1.11345097 2.034390625 0.922143562 0.120317325 0.07957312 0.322374536 0.026164005 0.032442785 7.01E-08 7.154349978 0.920939655 MS(ph)PMGTASGSNSPTSDSASVQR ddPTM_HeLa_CUDC101_4h_R1 10 MSPMGTASGSNSPTSDSASVQR 22 0 O76080;Q5QPB1 O76080 ZFAND5 AN1-type zinc finger protein 5 1 0 MS(0.499)PMGT(0.499)AS(0.002)GSNSPTSDSASVQR;MS(1)PMGTASGSNSPTSDSASVQR;MS(0.922)PMGT(0.078)ASGSNSPTSDSASVQR;MS(1)PMGTASGSNSPTSDSASVQR;MS(0.742)PMGT(0.159)AS(0.008)GS(0.002)NS(0.002)PT(0.011)S(0.076)DSASVQR;MS(0.571)PMGT(0.408)AS(0.021)GS(0.001)NSPTSDSASVQR;MS(1)PMGTASGSNSPTSDSASVQR;MS(0.992)PMGT(0.008)ASGSNSPTSDSASVQR;MS(0.999)PMGT(0.001)ASGSNSPTSDSASVQR;MS(0.996)PMGT(0.004)ASGSNSPTSDSASVQR ;;;;;;;;; 274.17 9.73E-89 222254500 20826.29 20649.12 20424.25 19723.99 22126.63 15584.87 14928.67 22446.41 18013.29 22675.1 TRUE FALSE FALSE 18385.06386 21285.29491 21528.44673 20528.41957 20494.39259 15287.61457 15504.4738 25001.61858 17270.77456 22540.2275 0.815655648 0.94432476 0.95511222 0.910745891 0.909236279 0.678236924 0.687857911 1.109199922 0.766220064 1 14.46021446 -5.477237883 24.8502341 0.916635427 0.808434562 0.052937611 0.128063716 621.5187108 338399.6583 0.017462842 0.039046625 3.33E-06 5.477237883 -0.108200865 KSVS(ph)SPTSSNTPTPTK ddPTM_HeLa_CUDC101_4h_R1 1 KSVSSPTSSNTPTPTK 16 1 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 KS(0.101)VS(0.668)S(0.222)PT(0.008)S(0.001)SNTPTPTK 105.06 0.0013752 21699000 2364.2 2568.1 2359.1 2491.8 3244.6 4836.3 4042.9 3557.4 1292.8 2486.9 TRUE FALSE FALSE 2087.07206 2647.220117 2486.640082 2593.426374 3005.252322 4744.055635 4198.836007 3962.360036 1239.510237 2472.107808 0.844247995 1.070835223 1.005878495 1.04907495 1.215663942 1.919032665 1.698484182 1.602826553 0.501398132 1 11.27152594 -5.476985629 2.97494083 0.951496548 1.734865202 0.814439169 0.175450032 0.053945167 0.946333778 0.016586896 0.039122271 3.33E-06 5.476985629 0.783368655 TS(ph)SLTQFPPSQSEER ddPTM_HeLa_CUDC101_4h_R1 1 TSSLTQFPPSQSEER 15 0 B7Z7F3;Q9H6Z4-3;Q9H6Z4-2;Q9H6Z4 B7Z7F3 RANBP3 Ran-binding protein 3 1 0 T(0.222)S(0.315)S(0.241)LT(0.222)QFPPSQSEER 137.79 0.0004961 5260200 1074.7 740.27 777.24 664.17 1116.2 1363.2 1090.1 1111.3 1038.3 1053.8 TRUE FALSE FALSE 948.7252951 763.0768413 819.2599454 691.2577234 1033.86015 1337.199231 1132.145522 1237.8059 995.5008345 1047.531951 0.905676714 0.728452092 0.782085878 0.65989178 0.986948559 1.276523576 1.080774215 1.181640235 0.950329805 1 10.03277853 -5.475940137 7.470420923 0.899492896 1.164803772 0.613613128 0.115352366 0.191715254 26.65452838 0.01936207 0.043071332 3.34E-06 5.475940137 0.265310876 LT(ph)PVSPESSSTEEK ddPTM_HeLa_CUDC101_4h_R1 2 LTPVSPESSSTEEK 14 0 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 LT(0.724)PVS(0.276)PESSSTEEK;LT(0.987)PVS(0.013)PESSSTEEK ; 225.33 3.24E-32 52061000 7452.1 6015.1 5410.5 5784.4 5601.1 3769.3 3719.7 3261.2 5869.9 5995.9 TRUE FALSE FALSE 6578.576135 6200.418101 5703.007996 6020.312834 5187.918012 3697.406883 3863.170075 3632.441826 5627.940238 5960.23612 1.103744214 1.040297394 0.956842629 1.010079586 0.870421558 0.620345706 0.64815722 0.60944596 0.944247866 1 12.54115377 -5.475933578 1.77358186 1.042644915 0.614000826 0.919158123 0.050187663 0.062839036 0.386093749 0.007550231 0.021135387 3.34E-06 5.475933578 -0.42864409 EIEPNY(ph)ESPSSNNQDKDSSQASK ddPTM_HeLa_CUDC101_4h_R1 1 EIEPNYESPSSNNQDKDSSQASK 23 1 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 EIEPNY(0.468)ES(0.368)PS(0.082)S(0.082)NNQDKDSSQASK 98.292 0.0001978 13713000 2416.6 2365.1 2256.5 2210.4 2232 2168.3 1725.4 1851 2636.6 2455.9 TRUE FALSE FALSE 2133.329811 2437.965928 2378.493216 2300.549666 2067.349807 2126.94329 1791.949256 2061.710358 2527.918232 2441.292198 0.873852714 0.998637496 0.974276335 0.942349166 0.846826041 0.871236672 0.734016705 0.844516015 1.035483681 1 11.25342927 -5.474698709 1.586249988 0.9472515 0.798388747 0.617642535 0.054923388 0.231161206 1.129098636 0.008828657 0.026254915 3.35E-06 5.474698709 -0.148862754 RLQEALER ddPTM_HeLa_CUDC101_4h_R1 2 RLQEALER 8 1 E9PGZ1;Q05682-5;Q05682-4;C9J813;C9JEK3;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682 E9PGZ1;E7EX44;Q05682 CALD1 Caldesmon 0 0 ; ; 109.44 0.000825 0 1406.13 1229.52 1101.91 1324.4 1444.44 1198.4 1364.01 1233.34 1306.16 1297.35 FALSE FALSE TRUE 1241.305573 1267.400054 1161.482588 1378.414757 1337.886539 1175.542517 1416.620323 1373.73844 1252.319532 1289.633305 0.96252599 0.982760021 0.900630112 1.0688424 1.037416244 0.911532381 1.098467539 1.065216318 0.97106637 1 10.33274519 -6.231122059 24.99444786 0.976327218 1.032880041 0.307261896 0.052854961 842.027965 694191.8912 0.007914062 0.013122751 5.87E-07 6.231122059 0.056552823 EGGGVHAVPPDPEDEGLEETGSKDKDQPPS(ph)PSPPPQSEALSSTSR ddPTM_HeLa_CUDC101_4h_R1 1 EGGGVHAVPPDPEDEGLEETGSKDKDQPPSPSPPPQSEALSSTSR 45 2 H3BU99;H3BPL8;H3BR21;H3BUX9;Q7L1V2 H3BU99 MON1B Vacuolar fusion protein MON1 homolog B 1 0 EGGGVHAVPPDPEDEGLEET(0.099)GS(0.099)KDKDQPPS(0.605)PS(0.192)PPPQS(0.001)EALS(0.001)S(0.001)T(0.001)S(0.001)R 52.259 0.0015743 35280000 2927.5 2212.1 2222.4 2292.2 2841.4 2863.5 2506 2688.4 2708.1 2560.1 TRUE FALSE FALSE 2584.342888 2280.252179 2342.549666 2385.685824 2631.795583 2808.883508 2602.657259 2994.436589 2596.470972 2544.872411 1.015509806 0.896018271 0.920497883 0.937448107 1.0341562 1.103742371 1.022706383 1.176654899 1.0202755 1 11.31337761 -5.474401507 4.226836836 0.986473352 1.091846944 0.53934826 0.054184831 0.167760047 6.310188861 0.008322892 0.018788932 3.35E-06 5.474401507 0.105373592 RLQSIGTENTEENR ddPTM_HeLa_CUDC101_4h_R1 2 RLQSIGTENTEENR 14 1 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8;H3BR04;H3BMQ8 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ; ; 170.26 5.17E-07 22673000 1601.47 1370.02 1591.96 1389.65 1691 1115.06 1576.55 1413.45 1668.58 1591.56 FALSE FALSE TRUE 1413.748114 1412.228692 1678.026173 1446.325934 1566.258299 1093.792088 1637.358062 1574.351435 1599.800426 1582.09333 0.893593372 0.892632985 1.060636652 0.914184964 0.989991089 0.691357499 1.034931398 0.995106549 1.011192194 1 10.62761899 RLQSIGTENTEENRR ddPTM_HeLa_CUDC101_4h_R1 4 RLQSIGTENTEENRR 15 2 P04075;H3BQN4;J3KPS3;P04075-2;H3BUH7;H3BPS8;H3BR04;H3BMQ8 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 0 0 ;;; ;;; 116.98 0.00058283 83977000 3016.88 3598.28 3348.15 2954.62 4545.59 3247.38 3151.78 4252.02 3663.67 3219.41 FALSE FALSE TRUE 2663.2459 3709.138742 3529.161117 3075.122175 4210.270882 3185.441637 3273.34521 4736.05277 3512.651972 3200.260806 0.832196518 1.159011395 1.102772971 0.960897365 1.315602426 0.995369387 1.022837015 1.479895876 1.097614284 1 11.64397377 -7.250525331 24.7099844 0.920759467 1.134870719 0.163886736 0.161554432 556.68791 1260371.557 0.024761041 0.030164025 5.62E-08 7.250525331 0.214111252 SEWLDPSQKS(ph)PLHVGETR ddPTM_HeLa_CUDC101_4h_R1 3 SEWLDPSQKSPLHVGETR 18 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 SEWLDPS(0.144)QKS(0.856)PLHVGETR;SEWLDPS(0.122)QKS(0.878)PLHVGET(0.001)R;SEWLDPS(0.005)QKS(0.995)PLHVGETR ;; 101.38 0.0010469 154064000 5592.7 4293.52 5143.68 4425.92 5106.4 5183.86 4914.96 3605.08 5444.77 5186.9 TRUE FALSE FALSE 4937.132184 4425.798262 5421.7629 4606.428148 4729.711045 5084.986507 5104.531654 4015.467735 5220.334276 5156.048088 0.95754192 0.858370245 1.051534588 0.893402868 0.917313214 0.98621782 0.990008543 0.778787875 1.012468113 1 12.33205 -5.473503361 0.012816305 1.859536574 1.54E-07 0.205681348 0.069817388 2708.557608 8.769502153 601.0479172 672.2008093 3.36E-06 5.473503361 -1.85953642 RMYS(ph)FDDVLEEGK ddPTM_HeLa_CUDC101_4h_R1 1 RMYSFDDVLEEGK 13 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;E9PJ10 E9PMS6 LMO7 LIM domain only protein 7 1 0 RMY(0.002)S(0.998)FDDVLEEGK 116.61 0.001525 3615400 3076.5 2763.6 2735.1 3197.9 3659.9 3471.5 4605.4 3310.3 2820.2 2664.1 TRUE FALSE FALSE 2715.877334 2848.74324 2882.967779 3328.324185 3389.916469 3405.286921 4783.031821 3687.131171 2703.950162 2648.253815 1.025535135 1.075706273 1.088629709 1.256799543 1.28005724 1.285861235 1.806107781 1.392287684 1.021031348 1 11.37082568 -5.473423365 0.695766163 1.008999377 1.636088741 0.73723126 0.119811009 0.316529809 0.237855243 0.020120246 0.114819624 3.36E-06 5.473423365 0.627089364 ALNHSVEDIEPDLLT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 ALNHSVEDIEPDLLTPR 17 0 Q8IWR0;I3L2K5 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A 1 0 ALNHSVEDIEPDLLT(1)PR;ALNHSVEDIEPDLLT(1)PR;ALNHSVEDIEPDLLT(1)PR;ALNHSVEDIEPDLLT(1)PR ;;; 171.29 4.73E-12 39404300 9149 7706.8 7950.4 8095.5 9155 9711.4 8017.7 8301.2 9232 8989.1 TRUE FALSE FALSE 8076.568089 7944.237373 8380.222673 8425.669482 8479.653889 9526.171225 8326.945375 9246.175053 8851.453052 8935.632433 0.903860823 0.889051495 0.937843262 0.942929283 0.948970759 1.06608808 0.93188092 1.034753289 0.990579359 1 13.12535413 -5.472359301 24.92408757 0.945955217 1.00375893 0.311137285 0.044731539 410.7944796 202667.3626 0.007129057 0.015940855 3.37E-06 5.472359301 0.057803713 TYSAPAINAIQGGSFES(ph)PKKEK ddPTM_HeLa_CUDC101_4h_R1 1 TYSAPAINAIQGGSFESPKKEK 22 2 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 TYSAPAINAIQGGS(0.163)FES(0.837)PKKEK 53.454 0.013071 39417000 3213.6 2683.6 2503.8 2510 3216.2 2626 2493.5 2409.2 2645.3 2799.3 TRUE FALSE FALSE 2836.90668 2766.278535 2639.163002 2612.368649 2978.947334 2575.913425 2589.67513 2683.45359 2536.259614 2782.649639 1.019498337 0.994116721 0.948435248 0.93880617 1.070543446 0.925705266 0.930650806 0.964351944 0.911454888 1 11.44224356 -5.472331061 0.440458625 1.009459909 0.93098495 0 0.050312722 2.271177055 0.580984934 0.011393358 0.079154979 3.37E-06 5.472331061 -0.078474959 S(ph)SFSSDPDEK ddPTM_HeLa_CUDC101_4h_R1 2 SSFSSDPDEK 10 0 P46013 P46013 MKI67 Antigen KI-67 1 0 S(0.953)S(0.047)FSSDPDEK;S(0.996)S(0.004)FSSDPDEK ; 227.37 3.03E-33 16530300 10055.9 7735 8006.1 7979.7 7216.5 8252.5 7878.3 4696.6 7670.1 10601.6 TRUE FALSE FALSE 8877.162646 7973.306182 8438.933983 8305.146657 6684.153172 8095.097312 8182.16867 5231.24196 7353.935232 10538.54121 0.842352131 0.756585378 0.800768704 0.788073652 0.634257915 0.768142113 0.776404296 0.49639147 0.697813396 1 13.36338756 -5.471159773 0.069196779 1.443823843 8.30E-16 0.105036311 0.118231617 23.52410542 0.421402441 3.189806537 5.761391793 3.38E-06 5.471159773 -1.443823843 AMST(ph)TSISSPQPGK ddPTM_HeLa_CUDC101_4h_R1 1 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-2;Q9UJU6-6;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 AMS(0.248)T(0.747)T(0.004)S(0.001)ISSPQPGK 177.36 7.80E-07 51070000 5209.4 4546 3751.9 4760.2 8436 10579 10720 10559 3913.5 4171.9 TRUE FALSE FALSE 4598.762029 4686.056872 3954.739063 4954.341531 7813.693087 10377.2232 11133.47399 11760.99388 3752.183874 4147.085353 1.108914246 1.129963932 0.953618922 1.194656273 1.88414089 2.502293133 2.684650313 2.835966197 0.904776139 1 12.01788203 -5.471107232 1.603973023 1.04784107 2.767494506 0.988410521 0.079711812 0.025132399 0.125521497 0.011173887 0.033117054 3.38E-06 5.471107232 1.719653436 up KNSTDLDS(ph)APEDPTS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 KNSTDLDSAPEDPTSPK 17 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L373;I3L135;I3L1Q4 I3L2J0 CIC Protein capicua homolog 2 0 KNS(0.26)T(0.323)DLDS(0.417)APEDPT(0.296)S(0.704)PK 90.758 0.0035027 34905000 3059.1 4029.9 3497.8 3795.2 3740.2 4419.1 4698.5 3835.2 3689.7 3783.4 TRUE FALSE FALSE 2700.516935 4154.056442 3686.901648 3949.98466 3464.292898 4334.81303 4879.722719 4271.783666 3537.609004 3760.896169 0.718051447 1.104538987 0.980325296 1.050277509 0.921134948 1.152601092 1.297489348 1.135841957 0.940629266 1 11.87686076 -5.470696838 0.691898247 0.882080098 1.255995195 0.420334252 0.114018124 0.700093413 0.518338257 0.026278432 0.151096803 3.38E-06 5.470696838 0.373915096 EISSS(ph)PTSK ddPTM_HeLa_CUDC101_4h_R1 1 EISSSPTSK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EIS(0.001)S(0.079)S(0.919)PTSK 154.15 0.00028098 135950000 9085.5 3685 9091.4 8141.3 5886 5101.5 4736.6 2199.5 9491.4 10563 TRUE FALSE FALSE 8020.511463 3798.530482 9582.908584 8473.337404 5451.801507 5004.197387 4919.292249 2449.882189 9100.160475 10500.17081 0.763845809 0.361758923 0.912643114 0.806971387 0.519210745 0.476582475 0.468496403 0.233318318 0.866667852 1 13.35812518 -5.469922725 0.184191235 1.087041458 6.82E-17 0.570331472 0.162164527 4.898513511 0.273056048 0.344826149 1.370379713 3.39E-06 5.469922725 -1.087041458 MPLPS(ph)PTESR ddPTM_HeLa_CUDC101_4h_R1 2 MPLPSPTESR 10 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 MPLPS(0.99)PT(0.01)ESR;MPLPS(0.996)PT(0.004)ESR ; 168.85 3.96E-07 59555000 5096.8 4689.3 4484.6 4322.7 4531.3 3867 3628 3319.5 4645.5 4569.8 TRUE FALSE FALSE 4499.36083 4833.771775 4727.051041 4498.99839 4197.035027 3793.243418 3767.933175 3697.378462 4454.010524 4542.618626 0.990477344 1.064093681 1.040600462 0.990397557 0.923924144 0.835034532 0.829462802 0.813931075 0.980494048 1 12.14930847 -5.46902514 2.030000646 1.005073906 0.8216633 0.922136453 0.024128089 0.070451043 0.56861802 0.003983622 0.010553519 3.40E-06 5.46902514 -0.183410607 RAASAATAAPTAT(ph)PAAQESGTIPK ddPTM_HeLa_CUDC101_4h_R1 1 RAASAATAAPTATPAAQESGTIPK 24 1 O00116;B8ZZ81 O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" 1 0 RAASAATAAPT(0.001)AT(0.999)PAAQESGTIPK 107.17 1.03E-05 4017500 2464.9 2319.5 2149.7 2187.5 2992.9 2965.1 2750.7 2709.6 1876.4 2001.4 TRUE FALSE FALSE 2175.968159 2390.961046 2265.919284 2276.715705 2772.11973 2908.545658 2856.79542 3018.049911 1799.053998 1989.495584 1.093728569 1.201792588 1.138941601 1.144368313 1.393378177 1.461951301 1.435939564 1.516992516 0.904276447 1 10.95818698 -5.468400165 0.415783907 1.017038787 1.650671246 0.894137207 0.065011929 0.445207717 0.100285477 0.017353091 0.120847727 3.40E-06 5.468400165 0.633632459 SETAPAAPAAPAPAEKT(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 3 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 1 0 SET(0.001)APAAPAAPAPAEKT(0.999)PVK;SETAPAAPAAPAPAEKT(1)PVK;SETAPAAPAAPAPAEKT(1)PVK ;; 119.51 2.99E-05 120967000 11642.9 9680.1 14217.6 11686.1 8888.8 7010.5 5355.3 4674.56 9029.8 12062.9 TRUE FALSE FALSE 10278.13691 9978.332407 14986.24646 12162.70967 8233.090933 6876.786393 5561.855715 5206.693015 8657.587822 11991.14933 0.8571436 0.832141451 1.249775651 1.014307247 0.686597315 0.573488512 0.463830077 0.43421134 0.721998166 1 13.54968233 -5.466690732 2.342421601 0.953470052 0.477434186 0.693666603 0.136340664 0.115781991 1.246224432 0.018669803 0.047063206 3.41E-06 5.466690732 -0.476035866 TTSIS(ph)PALAR ddPTM_HeLa_CUDC101_4h_R1 2 TTSISPALAR 10 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 T(0.029)T(0.006)S(0.099)IS(0.866)PALAR;T(0.004)TS(0.002)IS(0.995)PALAR ; 127.51 0.002997 144030000 6983.8 6084 5925.5 5709.9 6518.1 5474.3 5834.1 5330.2 5775.2 5901.8 TRUE FALSE FALSE 6165.169551 6271.440829 6245.850454 5942.774402 6037.272749 5369.886848 6059.123191 5936.968423 5537.143812 5866.695831 1.050875949 1.068990282 1.064628308 1.012967874 1.029075466 0.915317072 1.032799955 1.011978223 0.94382664 1 12.51833248 -5.466021473 24.99858318 1.0306239 0.988123175 0.120399134 0.044370659 340.6042109 149753.9935 0.005382398 0.012035372 3.42E-06 5.466021473 -0.042500725 RGPEVTSQGVQTS(ph)SPACK ddPTM_HeLa_CUDC101_4h_R1 1 RGPEVTSQGVQTSSPACK 18 1 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHH4;A0A5F9ZHX3;F8W0B5;F8WB05;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 RGPEVTSQGVQT(0.001)S(0.665)S(0.335)PACK 142.72 0.00018375 13997000 3126.6 2493.5 2443.7 2393.2 2303.1 2047.2 1775 1622.8 2687.3 2250.4 TRUE FALSE FALSE 2760.104688 2570.321779 2575.813814 2490.80504 2133.204901 2008.153071 1843.462345 1807.532992 2576.528357 2237.014521 1.233834051 1.148996466 1.15145154 1.113450546 0.953594571 0.897693355 0.824072588 0.808011292 1.151770958 1 11.12735891 -5.465945274 1.64818047 1.121048271 0.82373132 0.838233102 0.05802735 0.17544469 0.925830718 0.013758652 0.04033192 3.42E-06 5.465945274 -0.297316951 AASPVLLS(ph)SNSQK ddPTM_HeLa_CUDC101_4h_R1 1 AASPVLLSSNSQK 13 0 G3V1Z7;P41970 G3V1Z7 ELK3 ETS domain-containing protein Elk-3 1 0 AAS(0.24)PVLLS(0.615)S(0.138)NS(0.007)QK 97.565 0.011282 17859000 2985.1 2420.3 2249.1 2251.4 2446.3 1567.7 1798.3 1478.1 2123.4 2415.7 TRUE FALSE FALSE 2635.191103 2494.866574 2370.693149 2343.221823 2265.841323 1537.798734 1867.661033 1646.360929 2035.872553 2401.331309 1.097387559 1.03895142 0.987241178 0.975801138 0.943577138 0.640394238 0.777760664 0.685603408 0.84780994 1 11.22961875 -5.464306933 2.451654088 1.038103903 0.706957444 0.715755234 0.078092612 0.071566232 0.843611708 0.008254805 0.020553185 3.43E-06 5.464306933 -0.331146458 AAPWGSNPS(ph)PSAESTQAMDR ddPTM_HeLa_CUDC101_4h_R1 3 AAPWGSNPSPSAESTQAMDR 20 0 Q96N67-2;Q96N67-6;Q96N67;A0A1B0GWE0 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 AAPWGS(0.021)NPS(0.887)PS(0.077)AES(0.005)T(0.01)QAMDR;AAPWGSNPS(0.572)PS(0.379)AES(0.024)T(0.024)QAMDR;AAPWGSNPS(0.893)PS(0.102)AES(0.003)T(0.001)QAMDR ;; 165.49 2.62E-06 38620400 2633.25 2490.41 2172.45 2234.6 2488.51 2294.8 2609.62 2121.15 2754.51 2504.23 TRUE FALSE FALSE 2324.584427 2567.13658 2289.899218 2325.736647 2304.937575 2251.030513 2710.273918 2362.613142 2640.967932 2489.334729 0.933817538 1.031254074 0.919884012 0.9342804 0.925925127 0.904269919 1.088754311 0.949094196 1.060913143 1 11.28154452 -5.461920378 0.002783644 1.920462351 3.68E-08 0.029704993 0.061186771 224891.7391 156.6058209 53360.53147 54686.92359 3.45E-06 5.461920378 -1.920462314 DSNELSDS(ph)AGEEDSADLKR ddPTM_HeLa_CUDC101_4h_R1 1 DSNELSDSAGEEDSADLKR 19 1 Q9Y6X9-2;Q9Y6X9 Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 1 0 DSNELS(0.097)DS(0.903)AGEEDSADLKR 80.835 0.0031963 4835800 1599.9 1239.7 1346.7 1153.9 1529.7 1554.7 1571.6 1200.6 1425.4 1329.2 TRUE FALSE FALSE 1412.362147 1277.893688 1419.506676 1200.96103 1416.857079 1525.046688 1632.217138 1337.271451 1366.644409 1321.293859 1.068923569 0.967153278 1.07433079 0.908928034 1.072325485 1.15420705 1.235317282 1.012092383 1.034322834 1 10.36773565 -5.459191877 5.081477817 1.022450622 1.14144362 0.389264269 0.068807848 0.165295735 8.477211052 0.009402755 0.021172367 3.47E-06 5.459191877 0.118992998 RIS(ph)GLIYEETR ddPTM_HeLa_CUDC101_4h_R1 3 RISGLIYEETR 11 1 P62805 P62805 HIST1H4A Histone H4 1 0 RIS(1)GLIYEETR;RIS(1)GLIYEETR;RIS(1)GLIYEETR ;; 95.822 0.0095226 189425100 7745.9 8782.1 7395.9 7988.9 9812.1 10115.2 10511 8243.7 8428.9 9654 TRUE FALSE FALSE 6837.937344 9052.666092 7795.744725 8314.721873 9088.280931 9922.269413 10916.41279 9182.129486 8081.457174 9596.577579 0.712539162 0.943322348 0.812346346 0.866425744 0.94703355 1.033938332 1.137531865 0.956812927 0.842118673 1 13.22830427 -5.458517144 2.405751952 0.863473862 1.054264138 0.490182778 0.082228316 0.255634451 2.89695912 0.016759417 0.042116548 3.48E-06 5.458517144 0.190790276 IQPEDMFVCDINEKDISGPS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 IQPEDMFVCDINEKDISGPSPSK 23 1 S4R3D6;Q96GX9-3;Q96GX9 S4R3D6 APIP Methylthioribulose-1-phosphate dehydratase 1 0 IQPEDMFVCDINEKDIS(0.003)GPS(0.684)PS(0.313)K;IQPEDMFVCDINEKDIS(0.012)GPS(0.7)PS(0.288)K ; 98.23 5.80E-05 110135000 4305.2 3905.4 4738.7 4207.5 5811.3 4928.7 5015.2 6063.8 4594.8 2189.33 TRUE FALSE FALSE 3800.550982 4025.720745 4994.888456 4379.100036 5382.611977 4834.693259 5208.637944 6754.078481 4405.400399 2176.307768 1.746329742 1.849793859 2.295120447 2.012169465 2.473277014 2.221511742 2.393337018 3.103457416 2.024254319 1 11.08766688 -5.458101421 0.108049925 1.46E-15 4.671997385 0.503429867 0.365812484 5.413635962 0.156264738 2.029671092 4.989668064 3.48E-06 5.458101421 4.671997385 TVS(ph)PSTIR ddPTM_HeLa_CUDC101_4h_R1 3 TVSPSTIR 8 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 0 T(0.314)VS(0.651)PS(0.034)T(0.001)IR;T(0.012)VS(0.945)PS(0.042)TIR;TVS(0.953)PS(0.046)TIR ;; 117.53 0.0081379 305234000 16915.9 14969.3 13952.3 13730.1 15391.2 13566.7 13577.5 11838.8 14105.9 13972 TRUE FALSE FALSE 14933.04384 15430.48639 14706.60354 14290.07282 14255.82184 13307.9378 14101.18872 13186.48114 13524.44883 13888.89392 1.075178767 1.110994617 1.058875071 1.02888487 1.0264188 0.958171174 1.01528522 0.949426298 0.973759963 1 13.76164409 -5.457912556 2.986877536 1.0440764 0.978315245 0.361858003 0.039394169 0.232922457 4.063417016 0.005978891 0.014239934 3.48E-06 5.457912556 -0.065761155 TST(ph)IY(ph)S(ph)ST(ph)LGVFMSRK ddPTM_HeLa_CUDC101_4h_R1 1 TSTIYSSTLGVFMSRK 16 1 Q6Q759 Q6Q759 SPAG17 Sperm-associated antigen 17 4 0 T(0.313)S(0.318)T(0.722)IY(0.69)S(0.8)S(0.217)T(0.936)LGVFMS(0.004)RK 54.09 0.0030068 0 409.47 374.66 309.13 330.77 363.18 259.62 259.18 121.1 345.56 314.11 TRUE FALSE FALSE 361.4725473 386.2028305 325.8425029 344.2602303 336.388935 254.6681811 269.1766594 134.8855345 331.3158705 312.2416598 1.157669184 1.236871566 1.043558707 1.102544198 1.077335213 0.815612437 0.86207798 0.431990832 1.061087975 1 8.286519226 -4.122872561 0.89341581 1.090366861 8.50E-18 0.85616033 0.082596073 0.807118571 0.40636438 0.014549918 0.907290229 7.54E-05 4.122872561 -1.090366861 down S(ph)MPVLGSVSSVTK ddPTM_HeLa_CUDC101_4h_R1 2 SMPVLGSVSSVTK 13 0 A0MZ66-4;A0MZ66;A0MZ66-3;A0MZ66-7;A0MZ66-8;A0MZ66-5;A0MZ66-6 A0MZ66-4 KIAA1598 Shootin-1 1 0 S(1)MPVLGSVSSVTK;S(1)MPVLGSVSSVTK ; 180.85 8.62E-11 48140000 3171.4 2379.57 2846.4 2701.9 2385.12 1811.42 1765.88 1662.17 1598.05 2073.69 TRUE FALSE FALSE 2799.6533 2452.881731 3000.284994 2812.095161 2209.174449 1776.870182 1833.990583 1851.384714 1532.177703 2061.3556 1.358161251 1.18993624 1.455491228 1.364197017 1.071709534 0.8619911 0.889701216 0.898139416 0.743286458 1 11.00937769 -5.456496092 4.058663774 1.211328869 0.887538534 0.322597477 0.192630157 0.168089795 5.390254865 0.024614243 0.056232644 3.50E-06 5.456496092 -0.323790336 SIT(ph)SPPSTSTTK ddPTM_HeLa_CUDC101_4h_R1 1 SITSPPSTSTTK 12 0 C9JWJ8;Q14938-2;K7EN08;Q14938-6;Q14938-5;Q14938-3;Q14938-4;Q14938 C9JWJ8;K7EN08 NFIX Nuclear factor 1;Nuclear factor 1 X-type 1 0 S(0.003)IT(0.54)S(0.42)PPS(0.014)T(0.014)S(0.003)T(0.005)T(0.001)K 103.75 0.0022191 0 3361.4 2797.1 3405.8 2942.6 2825.8 2570.1 2154.5 2020.7 3131.7 3138.9 TRUE FALSE FALSE 2967.381788 2883.275336 3589.92785 3062.611947 2617.346364 2521.079625 2237.599787 2250.72832 3002.61 3120.229683 0.951013896 0.924058684 1.150533203 0.981534136 0.838831314 0.807978861 0.717126627 0.72133418 0.962304159 1 11.60743652 -5.455594903 1.873996416 0.986562096 0.733322012 0.768372271 0.061586937 0.129085536 0.883865167 0.009478252 0.026247035 3.50E-06 5.455594903 -0.253240083 VVS(ph)DADDS(ph)DSDAVSDK ddPTM_HeLa_CUDC101_4h_R1 1 VVSDADDSDSDAVSDK 16 0 Q96ST2-3;Q96ST2;Q96ST2-2 Q96ST2-3 IWS1 Protein IWS1 homolog 2 0 VVS(1)DADDS(0.974)DS(0.022)DAVS(0.005)DK 147.49 0.0021184 10456000 5261.8 5051.7 3810 4557.7 4744.7 4352.8 4116.4 3057.4 5704.2 5622.9 TRUE FALSE FALSE 4645.01978 5207.336889 4015.980125 4743.582706 4394.692934 4269.777592 4275.170927 3405.442058 5469.070462 5589.454741 0.831032721 0.931635934 0.718492288 0.848666449 0.786247163 0.763898768 0.764863681 0.609261943 0.97846225 1 12.44849184 -5.455257336 0.050962824 1.531750753 3.27E-13 0.748231662 0.057834028 45.09535665 0.583289241 6.925132723 10.79355546 3.51E-06 5.455257336 -1.531750753 LS(ph)GPAELR ddPTM_HeLa_CUDC101_4h_R1 1 LSGPAELR 8 0 Q96PC5;G3V599;Q96PC5-14;Q96PC5-6;Q96PC5-11;Q96PC5-13;Q96PC5-5;Q96PC5-8;Q96PC5-10;Q96PC5-9;Q96PC5-12;Q96PC5-7;Q96RT6 Q96PC5 MIA2;CTAGE1 Melanoma inhibitory activity protein 2;cTAGE family member 2 1 0 LS(1)GPAELR 86.898 0.033424 2837400 2465.3 2091.4 1938.4 1953.8 1692.2 1860.9 1499 1294.5 1848.8 2308.9 TRUE FALSE FALSE 2176.321271 2155.833555 2043.195767 2033.484409 1567.369777 1825.406433 1556.816932 1441.860647 1772.591681 2295.16656 0.948219318 0.939292857 0.890216772 0.885985551 0.682900232 0.795326346 0.678302376 0.628216127 0.772315052 1 11.16438314 -5.45207624 0.461512493 0.990560537 0.566729799 0.570109315 0.080529035 0.39003741 0.109541956 0.010679805 0.075752592 3.53E-06 5.45207624 -0.423830738 VSGAGFS(ph)PSSK ddPTM_HeLa_CUDC101_4h_R1 2 VSGAGFSPSSK 11 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 VSGAGFS(0.95)PS(0.047)S(0.003)K;VSGAGFS(0.999)PS(0.001)SK ; 202.18 1.31E-16 156320000 9391.4 7892.8 8518.7 8040.4 8800.8 7774.1 7482.4 6699.6 8856.9 8712.5 TRUE FALSE FALSE 8290.554328 8135.967813 8979.24669 8368.322266 8151.582518 7625.821995 7770.998674 7462.255383 8491.814833 8660.677663 0.957263929 0.939414689 1.036783383 0.966243358 0.941217632 0.880511005 0.897273744 0.861624884 0.980502354 1 13.0802642 -5.451536605 2.132979641 0.980051664 0.879173712 0.753838647 0.025652784 0.12860787 1.143108009 0.004114111 0.010821669 3.54E-06 5.451536605 -0.100877952 RGTGQS(ph)DDSDIWDDTALIK ddPTM_HeLa_CUDC101_4h_R1 2 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 0 RGT(0.233)GQS(0.765)DDS(0.001)DIWDDTALIK;RGT(0.387)GQS(0.612)DDSDIWDDTALIK ; 167.87 5.94E-07 216457000 11355.9 11100.9 10536 10611.9 11480.6 10062.9 10270.8 8926.3 13249.5 11253.6 TRUE FALSE FALSE 10024.77862 11442.90557 11105.60803 11044.69915 10633.69901 9870.966948 10666.9482 9942.433911 12703.35 11186.66309 0.896136635 1.02290607 0.992754313 0.987309537 0.950569346 0.882387078 0.953541562 0.888775664 1.135579923 1 13.44949213 -5.450604138 7.537650316 0.961853407 0.913068036 0.14999107 0.066675485 0.398566726 37.00074882 0.006924928 0.015507228 3.54E-06 5.450604138 -0.048785371 (ac)SQGDS(ph)NPAAIPHAAEDIQGDDR ddPTM_HeLa_CUDC101_4h_R1 1 SQGDSNPAAIPHAAEDIQGDDR 22 0 P68402-3;P68402-2;P68402-4;P68402 P68402-3 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 1 0 S(0.39)QGDS(0.61)NPAAIPHAAEDIQGDDR 119.31 3.19E-19 30246000 0 0 0 121.38 53.266 134.71 63.746 118.33 128.97 150.26 TRUE FALSE FALSE 0 0 0 126.330401 49.3366733 132.1406312 66.20470457 131.8002089 123.653802 149.3662468 0 0 0 0.845776095 0.330306708 0.884675313 0.443237384 0.882396202 0.827856391 1 7.222710361 -5.450604025 1.685839265 0.443906511 0.703893058 0.103985091 0.372510507 1.025819523 5.654141985 0.071204598 0.20875359 3.54E-06 5.450604025 0.259986547 HIEDTGSTPS(ph)IGENDLK ddPTM_HeLa_CUDC101_4h_R1 2 HIEDTGSTPSIGENDLK 17 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 HIEDTGS(0.002)T(0.083)PS(0.914)IGENDLK;HIEDTGST(0.084)PS(0.916)IGENDLK ; 158.14 5.50E-05 21177500 5488.8 3719.9 4259.2 4011.1 5813.4 5678.4 6102.4 5085.2 4724.8 4643.8 TRUE FALSE FALSE 4845.411184 3834.50571 4489.465235 4174.689995 5384.557064 5570.093981 6337.771612 5664.078613 4530.041744 4616.178471 1.049658547 0.830666694 0.972550187 0.904360614 1.166453398 1.20664615 1.372947699 1.227005985 0.981340252 1 12.17248329 -5.449991648 2.477934794 0.996671369 1.285090415 0.76230102 0.077361041 0.117900221 1.414215441 0.011870775 0.029726572 3.55E-06 5.449991648 0.288419046 ANVVT(ph)TPSTNR ddPTM_HeLa_CUDC101_4h_R1 1 ANVVTTPSTNR 11 0 Q8IWZ3;Q8IWZ3-4;Q8IWZ3-6;H0Y785;H0Y472;H0Y4P6;E9PDP5 Q8IWZ3 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 0 ANVVT(0.498)T(0.498)PS(0.004)TNR 115.92 0.025544 10881000 5111.4 3535.3 3993.3 3965.5 3452.1 3292.8 2784.4 2393.8 3831 4337.3 TRUE FALSE FALSE 4512.24944 3644.218403 4209.189877 4127.23023 3197.445461 3229.995326 2891.795241 2666.300516 3673.084558 4311.501547 1.046561016 0.845231844 0.976270061 0.957260524 0.74160833 0.749157873 0.670716503 0.618415762 0.851926995 1 12.07397468 -5.44959956 0.637436117 1.019378414 0.577874351 0.693983802 0.077469874 0.289237347 0.173630363 0.011339135 0.070906372 3.55E-06 5.44959956 -0.441504063 SSGNS(ph)PTPVSR ddPTM_HeLa_CUDC101_4h_R1 3 SSGNSPTPVSR 11 0 O95429;O95429-2;H0YBT1 O95429 BAG4 BAG family molecular chaperone regulator 4 1 0 S(0.121)S(0.216)GNS(0.54)PT(0.121)PVS(0.002)R;S(0.243)S(0.004)GNS(0.746)PT(0.006)PVSR;S(0.002)SGNS(0.988)PT(0.009)PVS(0.001)R ;; 125.47 0.0016207 342950000 8970.5 7781.9 9243.5 8113.1 8262.7 7122.97 7335.34 5392.3 8669.9 8459.3 TRUE FALSE FALSE 7918.991588 8021.651115 9743.23157 8443.987286 7653.177083 6987.111215 7618.266521 6006.137636 8312.523052 8408.983707 0.941729924 0.95393824 1.158669336 1.004162641 0.910119147 0.830910305 0.905967568 0.7142525 0.988528857 1 13.03771573 -5.449120576 2.565524283 0.98753221 0.823042156 0.576692471 0.072155045 0.186353742 2.394510101 0.010926993 0.027109049 3.56E-06 5.449120576 -0.164490054 VYEDSGIPLPAES(ph)PKKGPK ddPTM_HeLa_CUDC101_4h_R1 1 VYEDSGIPLPAESPKKGPK 19 2 Q8IXM2-2;F8W038;F8W1H0;H0YIS7;Q8IXM2;Q8IXM2-3 Q8IXM2-2 BAP18;C17orf49;RNASEK-C17orf49 Chromatin complexes subunit BAP18 1 0 VYEDS(0.001)GIPLPAES(0.999)PKKGPK 87.156 0.003598 43544000 1132.3 889.07 1087.6 1205 1279.6 1444.7 1366.5 1314.4 1168.9 1214.7 TRUE FALSE FALSE 999.5735105 916.4611929 1146.398946 1254.145108 1185.206457 1417.144755 1419.206363 1464.025983 1120.717447 1207.47491 0.82782135 0.758989843 0.94941844 1.038651071 0.981557834 1.17364323 1.175350602 1.212469071 0.928149676 1 10.2377775 -5.446468308 1.129752175 0.906380914 1.212723565 0.752402693 0.07091634 0.257240325 0.603015632 0.01435125 0.055799317 3.58E-06 5.446468308 0.306342651 VEESSEIS(ph)PEPK ddPTM_HeLa_CUDC101_4h_R1 1 VEESSEISPEPK 12 0 O94782 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 VEES(0.02)S(0.306)EIS(0.675)PEPK 96.23 0.014757 20576000 7132.4 6090.3 6687.9 5598.4 5848.2 5037.6 4846.5 4115.8 8456.2 5191.2 TRUE FALSE FALSE 6296.350884 6277.934924 7049.468104 5826.72695 5416.789937 4941.516173 5033.431128 4584.326035 8107.631857 5160.322512 1.220146778 1.216578016 1.366090605 1.129140076 1.049699883 0.957598321 0.975410184 0.888379752 1.571148284 1 12.33324552 -5.446099056 2.367262748 1.138830423 0.939871236 0.314629511 0.165733888 0.271307876 2.96832684 0.018292595 0.046567308 3.58E-06 5.446099056 -0.198959186 DIEVLS(ph)EDTDYEEDEVTKK ddPTM_HeLa_CUDC101_4h_R1 1 DIEVLSEDTDYEEDEVTKK 19 1 H7C5R6;Q4LE39-2;Q4LE39;H0Y7Y8;Q4LE39-4;Q4LE39-3 H7C5R6 ARID4B AT-rich interactive domain-containing protein 4B 1 0 DIEVLS(0.998)EDT(0.002)DYEEDEVTKK 102.66 0.00053842 15757000 2726.3 2699.1 2457 2365 2560.8 1862.5 1856.6 1601.8 3399.5 2818.9 TRUE FALSE FALSE 2406.727247 2782.256072 2589.832852 2461.454922 2371.894886 1826.975916 1928.209684 1784.142437 3259.371171 2802.133057 0.858891137 0.99290648 0.924236215 0.878421856 0.846460478 0.651994705 0.6881221 0.636708679 1.163175019 1 11.45230975 -5.445253998 1.6188961 0.935393399 0.649450885 0.726821271 0.083680163 0.118025452 0.597858122 0.008701448 0.026211395 3.59E-06 5.445253998 -0.285942514 HSS(ph)NPPLESHVGWVMDSR ddPTM_HeLa_CUDC101_4h_R1 4 HSSNPPLESHVGWVMDSR 18 0 Q6PKG0;Q6PKG0-3;H0YC33;H0YBR8 Q6PKG0 LARP1 La-related protein 1 1 0 HS(0.431)S(0.569)NPPLESHVGWVMDSR;HS(0.328)S(0.672)NPPLESHVGWVMDSR;HS(0.186)S(0.814)NPPLESHVGWVMDSR;HS(0.225)S(0.775)NPPLESHVGWVMDSR ;;; 119.43 6.01E-05 188439700 7876.11 5962.64 6809.45 6692.51 8430.34 8361.3 8034.27 7694.14 7642.57 7657.96 TRUE FALSE FALSE 6952.884325 6146.341871 7177.589464 6965.459485 7808.450614 8201.822133 8344.154485 8570.009797 7327.54003 7612.410113 0.913361763 0.807410765 0.942880028 0.915013692 1.025752751 1.077427781 1.09612519 1.125794547 0.962578201 1 12.89413757 -5.442528289 2.210021899 0.941384923 1.104436209 0.71186956 0.049899776 0.169355317 1.613749408 0.008941511 0.023355918 3.61E-06 5.442528289 0.163051286 SASQS(ph)SLDKLDQELKEQQK ddPTM_HeLa_CUDC101_4h_R1 2 SASQSSLDKLDQELKEQQK 19 2 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 S(0.012)AS(0.042)QS(0.473)S(0.473)LDKLDQELKEQQK;SAS(0.001)QS(0.602)S(0.397)LDKLDQELKEQQK ; 139.26 4.29E-05 128889000 4860.9 5064.16 4486.43 4966.68 5765.24 5550.68 5423.4 5516.16 5530.23 4570.1 TRUE FALSE FALSE 4291.112671 5220.180767 4728.979977 5169.242678 5339.949731 5444.810027 5632.582355 6144.097357 5302.271579 4542.916842 0.944572137 1.149081295 1.040956756 1.137868655 1.175445186 1.198527337 1.239860326 1.352456488 1.167151362 1 12.14940318 -5.442034667 0.465047746 0.969966506 1.382016312 0.525082791 0.0780327 0.522156449 0.148419112 0.0138287 0.099175525 3.61E-06 5.442034667 0.412049806 GLNPDGTPALSTLGGFSPASKPSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58-6;Q9UK58 Q9UK58-6 CCNL1 Cyclin-L1 1 0 GLNPDGTPALSTLGGFSPAS(0.013)KPS(0.262)S(0.725)PR 143.13 4.77E-11 91068000 2308.2 2257.4 1571.9 1792.5 2067.7 1571.9 1401.6 1351.9 1789.6 2117 TRUE FALSE FALSE 2037.636295 2326.947818 1656.881669 1865.605898 1915.16989 1541.918626 1455.660182 1505.794831 1715.831931 2104.40799 0.968270556 1.105749374 0.787338613 0.886522911 0.910075375 0.732708977 0.691719566 0.715543202 0.815351367 1 11.03919872 -5.441551718 0.625387509 0.992892942 0.647960116 0.503268868 0.091234686 0.464385901 0.265097933 0.013786388 0.088152874 3.62E-06 5.441551718 -0.344932826 RLTDLDK(ac)AQLLEIAK ddPTM_HeLa_CUDC101_4h_R1 1 RLTDLDKAQLLEIAK 15 2 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2;H7C2G8 P18583-10 SON Protein SON 0 1 RLTDLDK(1)AQLLEIAK 125.67 0.0095478 231870 294.77 144.85 143.64 59.196 170.63 225.7 127.08 220.68 142.01 204.05 FALSE TRUE FALSE 260.2175074 149.3126568 151.4056129 61.61026875 158.0429648 221.3951485 131.9815182 245.8013192 136.1562877 202.8363015 1.282894164 0.736123937 0.746442386 0.303743799 0.779165089 1.091496674 0.650679968 1.211821145 0.671261932 1 7.664172064 -7.250133124 24.57760925 1.133588911 0.774228712 0.016224891 0.280160525 522.8135883 1136495.955 0.041272036 0.050294525 5.62E-08 7.250133124 -0.359360199 RLTLEDLEDSWDR ddPTM_HeLa_CUDC101_4h_R1 2 RLTLEDLEDSWDR 13 1 Q6P2Q9;I3L3Z8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 ; ; 203.85 4.19E-17 29304000 4145.5 3404.9 3986.9 3705.9 4813.8 4546.6 3848.1 3940.8 3801.2 3915 FALSE FALSE TRUE 3659.570774 3509.800933 4202.443874 3857.04262 4458.695564 4459.88118 3996.522506 4389.404743 3644.512927 3891.713406 0.940349505 0.901865211 1.079844129 0.991091126 1.145689597 1.145994249 1.026931351 1.127884889 0.936480297 1 11.92618976 -6.208029622 1.560414528 0.967933065 1.103985924 0.592666664 0.055097904 0.213463221 1.017166548 0.008835598 0.016640701 6.19E-07 6.208029622 0.136052859 SLPAPVAQRPDS(ph)PGGGLQAPGQK ddPTM_HeLa_CUDC101_4h_R1 2 SLPAPVAQRPDSPGGGLQAPGQK 23 1 Q5JVS0-2;Q5JVS0 Q5JVS0-2 HABP4 Intracellular hyaluronan-binding protein 4 1 0 SLPAPVAQRPDS(1)PGGGLQAPGQK;SLPAPVAQRPDS(1)PGGGLQAPGQK ; 97.124 6.53E-05 190713000 4289.4 4124.3 4080.4 3913.3 3789.5 3375.9 3022.7 2956.5 3279.5 3559.6 TRUE FALSE FALSE 3786.603034 4251.364795 4300.998767 4072.901289 3509.956135 3311.510332 3139.286552 3293.056009 3144.317622 3538.427341 1.070137287 1.201484271 1.215511399 1.151048445 0.991953712 0.93587066 0.887198252 0.930655258 0.88862009 1 11.78889258 -5.440598672 3.329399398 1.070540515 0.915071392 0.399523184 0.092167108 0.208104175 4.408353197 0.013272845 0.031275352 3.63E-06 5.440598672 -0.155469123 TGT(ph)PSDPR ddPTM_HeLa_CUDC101_4h_R1 1 TGTPSDPR 8 0 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-19;O60716-4;O60716-6;O60716-11;O60716-13;O60716-21;O60716-24;O60716-9;O60716-17;O60716-16;O60716-10;O60716-23;O60716-15;O60716-18;O60716-12;O60716-22;O60716-20;O60716-14 O60716-5 CTNND1 Catenin delta-1 1 0 T(0.222)GT(0.773)PS(0.005)DPR 117.53 0.039275 80805000 14398 11763 14039 14722 11660 9346.1 8951.4 5910.2 12585 14352 TRUE FALSE FALSE 12710.28827 12125.40409 14797.99081 15322.42679 10799.86503 9167.838714 9296.658497 6582.993278 12066.24097 14266.63367 0.890910117 0.849913467 1.037244745 1.074004362 0.757001636 0.642607004 0.651636449 0.46142583 0.845766511 1 13.80035734 -5.438425483 2.571970689 0.953968074 0.584214344 0.775249278 0.087806795 0.096062377 1.236624113 0.012640939 0.031541709 3.64E-06 5.438425483 -0.36975373 S(ph)PSPLTGK ddPTM_HeLa_CUDC101_4h_R1 1 SPSPLTGK 8 0 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 S(0.709)PS(0.291)PLTGK 113.66 0.0099176 20518000 6535.5 5211.6 5803.7 5728.8 5843.8 4767 4663.6 4039.8 5258.9 6111.5 TRUE FALSE FALSE 5769.418597 5372.163219 6117.465577 5962.445226 5412.714516 4676.077417 4843.476614 4499.674503 5042.125916 6075.148526 0.949675316 0.884285083 1.006965599 0.98144847 0.890960031 0.769705859 0.797260609 0.740669052 0.829959283 1 12.56870397 -5.438206546 2.567539505 0.970895985 0.769306529 0.629384497 0.056611357 0.078219887 1.003460344 0.00560558 0.013995648 3.65E-06 5.438206546 -0.201589456 RMEEEQHHWDDR ddPTM_HeLa_CUDC101_4h_R1 2 RMEEEQHHWDDR 12 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 0 ; ; 66.023 0.019962 9024500 2324.65 2115.69 2105.64 2028.06 2615.47 1869.11 1517.74 1618.12 2047.44 2330.58 FALSE FALSE TRUE 2052.158051 2180.871901 2219.477268 2110.773053 2422.531989 1833.459841 1576.27974 1802.32024 1963.043657 2316.717607 0.885804142 0.941362855 0.958026676 0.911105025 1.045674269 0.791404112 0.68039356 0.777962854 0.847338342 1 11.17786648 -5.078914476 5.454097002 0.948232244 0.730098992 0.707116797 0.057202298 0.075657495 3.870701818 0.007646407 0.020252183 8.34E-06 5.078914476 -0.218133252 RMEELHNQEMQK ddPTM_HeLa_CUDC101_4h_R1 1 RMEELHNQEMQK 12 1 P23246;P23246-2;H0Y9K7 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 58.274 0.034598 11875000 2934 2581.7 2508.9 2543.7 2850.7 2708.1 2373.4 2554.4 2578 2274.1 FALSE FALSE TRUE 2590.080968 2661.239117 2644.538723 2647.443081 2640.40954 2656.447505 2464.942833 2845.182571 2471.733749 2260.573552 1.145762749 1.177240667 1.169852987 1.171137775 1.168026379 1.175121023 1.090405942 1.258610926 1.093410009 1 11.14247314 -8.935072182 0.549907771 0.982566712 1.173002015 0.484278448 0.047284245 0.390881636 0.198716425 0.037245069 0.00908313 1.16E-09 8.935072182 0.190435303 RMEELHNQEVQK ddPTM_HeLa_CUDC101_4h_R1 2 RMEELHNQEVQK 12 1 Q15233;Q15233-2;H7C367;C9JYS8 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 0 ; ; 107.85 0.0043004 14813500 3437.8 3620.3 3058.3 3455.6 3626.1 3390.35 3079.27 3265.8 3133.93 3516 FALSE FALSE TRUE 3034.826295 3731.837152 3223.640949 3596.534304 3358.609827 3325.684722 3198.038475 3637.565471 3004.748079 3495.086676 0.86831217 1.067738084 0.922335051 1.029025783 0.960951799 0.951531401 0.915009776 1.040765454 0.859706313 1 11.77111252 -7.279957783 24.84631767 0.937814087 0.97849716 0.194600781 0.061165907 1528.672312 2051029.551 0.010981627 0.012568346 5.25E-08 7.279957783 0.040683073 ASS(ph)VTTFTGEPNTCPR ddPTM_HeLa_CUDC101_4h_R1 3 ASSVTTFTGEPNTCPR 16 0 H0YFA4;P52943;P52943-2 H0YFA4 CRIP2 Cysteine-rich protein 2 1 0 ASS(0.608)VT(0.31)T(0.082)FTGEPNTCPR;ASS(0.918)VT(0.082)TFTGEPNTCPR;AS(0.004)S(0.976)VT(0.02)T(0.001)FTGEPNTCPR ;; 177.39 2.38E-07 198272000 6691.2 5503 4758.18 5386.3 8814.3 9039.7 8938 9748.5 5754.3 4929.54 TRUE FALSE FALSE 5906.867679 5672.540907 5015.421604 5605.976596 8164.08665 8867.282784 9282.741654 10858.22984 5517.105318 4900.218877 1.205429355 1.157609701 1.02350971 1.144025754 1.666065712 1.809568717 1.894352454 2.215866293 1.125889569 1 12.25863048 -5.43771268 1.243014889 1.092135162 2.074915839 0.93484749 0.104674337 0.093320993 0.269663351 0.018431457 0.066937649 3.65E-06 5.43771268 0.982780677 RMGESDDSILR ddPTM_HeLa_CUDC101_4h_R1 2 RMGESDDSILR 11 1 Q8WVC2;P63220 Q8WVC2 RPS21 40S ribosomal protein S21 0 0 ; ; 187.85 7.05E-11 35001000 4080.3 4445.8 3812.1 4189.3 5364.2 4298.5 4117.3 4968.9 4520.8 4076.7 FALSE FALSE TRUE 3602.013419 4582.769828 4018.193657 4360.157762 4968.493653 4216.513274 4276.10564 5534.539491 4334.450711 4052.451607 0.888847979 1.130863554 0.991546364 1.075930865 1.226046387 1.040484547 1.05518981 1.365726239 1.069587285 1 11.98457924 -6.340401084 0.835217936 0.951095722 1.168669072 0.265363633 0.107882011 0.425710935 0.588507345 0.020010283 0.043523453 4.57E-07 6.340401084 0.217573349 SDSDYDLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 SDSDYDLSPK 10 0 Q08499-6;Q08499;Q08499-10;A0A087WSZ7;Q08499-11;Q08499-9;A0A1B0GW84;Q08499-2;Q08499-12;Q08499-7;A0A1W2PQN6;E9PMG3;Q07343-3;Q07343 Q08499-6 PDE4D;PDE4B "cAMP-specific 3,5-cyclic phosphodiesterase 4D;cAMP-specific 3,5-cyclic phosphodiesterase 4B" 1 0 SDSDYDLS(1)PK;SDSDYDLS(1)PK;SDS(0.206)DYDLS(0.794)PK ;; 142.89 0.00097703 570266000 14237.4 13413.2 12853.6 13166.2 12680.7 11993.6 10128.3 9887.4 13362.2 13744.6 TRUE FALSE FALSE 12568.51355 13826.44479 13548.5045 13703.17455 11745.27002 11764.84206 10518.95192 11012.94165 12811.40446 13662.84651 0.919904468 1.011973953 0.991631172 1.002951657 0.859650295 0.861082795 0.769894613 0.806050309 0.937681943 1 13.73797046 -5.437708607 1.880899172 0.970259268 0.798433355 0.810032497 0.03637734 0.124902025 0.858885777 0.00620137 0.017376792 3.65E-06 5.437708607 -0.171825912 RMLASLGMLSVLAPEDR ddPTM_HeLa_CUDC101_4h_R1 1 RMLASLGMLSVLAPEDR 17 1 H0YMT0 H0YMT0 RASGRP1 0 0 64.374 0.029968 45520000 1840.7 1882.8 1964.5 1558.9 1748.3 1749.8 1648.4 1910.4 1667.1 1662.1 FALSE FALSE TRUE 1624.935936 1940.806836 2070.706812 1622.47868 1619.331392 1716.42548 1711.97934 2127.872214 1598.381432 1652.213755 0.983490139 1.174670547 1.253292321 0.982002889 0.980097997 1.038864054 1.036173034 1.287891598 0.967418064 1 10.69018463 -4.259746036 4.967681619 1.024990681 1.301408562 0.365980586 0.091784843 0.140131509 10.5381295 0.013566695 0.132750277 5.50E-05 4.259746036 0.276417882 SFGTRPLSSGFS(ph)PEEAQQQDEEFEK ddPTM_HeLa_CUDC101_4h_R1 1 SFGTRPLSSGFSPEEAQQQDEEFEK 25 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(0.211)FGT(0.059)RPLS(0.229)S(0.229)GFS(0.271)PEEAQQQDEEFEK 46.415 0.030021 25172000 989.26 897.65 1192.6 857.81 866 772.18 749.15 555.33 964.24 861.09 TRUE FALSE FALSE 873.3004424 925.3055325 1257.075563 892.7951996 802.1169053 757.451953 778.0449664 618.5465225 924.4936191 855.9681984 1.020248701 1.081004568 1.46860078 1.043023796 0.937087274 0.884906652 0.908964805 0.722627924 1.080056036 1 9.741413387 -5.436471482 2.180250248 1.055044786 0.837408671 0.411912153 0.140380742 0.323474272 2.996305353 0.022550354 0.059441962 3.66E-06 5.436471482 -0.217636115 IYLEENPEKSETIQDTDTQS(ph)LVGSPSTR ddPTM_HeLa_CUDC101_4h_R1 1 IYLEENPEKSETIQDTDTQSLVGSPSTR 28 1 E9PMR6;Q9NZN5-2;Q9NZN5 E9PMR6 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 0 IYLEENPEKS(0.025)ET(0.085)IQDT(0.049)DT(0.175)QS(0.652)LVGS(0.009)PS(0.003)T(0.002)R 70.767 5.06E-05 15296000 640.66 839.79 648.41 582.78 811.64 956.35 956.41 759.61 860.46 658.22 TRUE FALSE FALSE 565.562806 865.6629345 683.4650059 606.5482874 751.7669342 938.1092171 993.2990541 846.080932 824.9914746 654.3048782 0.864371984 1.323026869 1.044566576 0.927011715 1.148955111 1.433749386 1.518098194 1.293098921 1.26086707 1 9.353819217 -5.436164867 2.941200056 0.975551708 1.426916856 0.422324778 0.158301704 0.118732675 1.982243688 0.020586999 0.0497605 3.66E-06 5.436164867 0.451365149 DSDAGSS(ph)TPTTSTR ddPTM_HeLa_CUDC101_4h_R1 4 DSDAGSSTPTTSTR 14 0 P51532-5;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;P51532;A0A2R8Y4C5;P51532-4;P51532-2;P51532-3;A0A2R8Y6V2;A0A2R8Y6N0;A0A2R8YG32;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y526;A0A2R8YDA1;A0A2R8Y7Y7;A0A2R8YF58;K7EQF0;A0A2R8Y5K3;A0A2R8Y523;A0A2R8YFK5;K7EP28 P51532-5 SMARCA4 Transcription activator BRG1 1 0 DSDAGS(0.066)S(0.572)T(0.346)PT(0.016)TSTR;DSDAGS(0.098)S(0.566)T(0.335)PT(0.001)TSTR;DSDAGS(0.089)S(0.439)T(0.439)PT(0.017)T(0.005)S(0.006)T(0.006)R;DSDAGS(0.088)S(0.454)T(0.454)PT(0.004)TSTR ;;; 228.03 3.40E-33 127366690 7636.63 6405.86 6559.55 6212.84 7438.53 7707.78 7220.23 6383.13 7064.25 6559.42 TRUE FALSE FALSE 6741.475808 6603.216954 6914.179115 6466.226469 6889.804462 7560.766939 7498.71669 7109.759718 6773.058625 6520.404278 1.033904574 1.012700543 1.060391169 0.991691035 1.056652957 1.159554932 1.150038613 1.090386334 1.038748264 1 12.6707457 -5.436155235 4.190254435 1.018369685 1.134135447 0.789310242 0.025385038 0.069023388 2.181414998 0.003585618 0.008229175 3.66E-06 5.436155235 0.115765761 KPVTVSPTT(ph)PTS(ph)PTEGEAS ddPTM_HeLa_CUDC101_4h_R1 1 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 2 0 KPVT(0.003)VS(0.016)PT(0.12)T(0.814)PT(0.16)S(0.711)PT(0.129)EGEAS(0.047) 78.441 0.016816 23571000 4232.4 3854 3395.3 4109.4 4785.2 4418.9 4476.6 4055.6 3973.8 4795.5 TRUE FALSE FALSE 3736.284488 3972.737172 3578.860188 4276.999094 4432.205329 4334.616845 4649.263962 4517.273111 3809.998282 4766.976153 0.783785018 0.833387255 0.750761085 0.897214284 0.929772918 0.909301139 0.975306738 0.947618147 0.799248446 1 12.21885869 -5.435502387 1.785482825 0.878389633 0.952406139 0.233216895 0.071285373 0.703632375 4.350155727 0.014460724 0.041635736 3.67E-06 5.435502387 0.074016506 GSPS(ph)PEKPDVEK ddPTM_HeLa_CUDC101_4h_R1 1 GSPSPEKPDVEK 12 1 Q7Z3Z5;Q93074-3;Q93074;Q93074-2 Q7Z3Z5 TNRC11;MED12 Mediator of RNA polymerase II transcription subunit 12 1 0 GS(0.007)PS(0.993)PEKPDVEK 142.39 0.005866 9311700 2326.2 1782.6 1886 2199.5 1987.2 1288 1489.9 1161.1 1763.2 2155.7 TRUE FALSE FALSE 2053.526362 1837.519793 1987.962865 2289.205117 1840.608215 1263.433546 1547.365942 1293.274931 1690.52015 2142.877801 0.958303064 0.85750097 0.92770706 1.068285423 0.85894222 0.589596638 0.722097145 0.603522483 0.788901798 1 11.06533387 -5.435481293 4.097895217 0.970777554 0.649003844 0.700799832 0.083877216 0.061404402 1.865104316 0.008802787 0.020248291 3.67E-06 5.435481293 -0.32177371 YILT(ph)IENGVGEPKS(ph)S(ph)T(ph)VSVK ddPTM_HeLa_CUDC101_4h_R1 1 YILTIENGVGEPKSSTVSVK 20 1 A0A0A0MTS7;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12;A0A0A0MRA3;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9 A0A0A0MTS7 TTN Titin 4 0 Y(0.01)ILT(0.991)IENGVGEPKS(0.944)S(0.685)T(0.685)VS(0.685)VK 51.495 0.035637 29202000 2540 2151.6 2411.6 2604.5 2264.3 2372.2 2268.2 2129.2 2386.8 2481.6 TRUE FALSE FALSE 2242.26505 2217.888246 2541.978391 2710.722768 2097.2671 2326.954237 2355.685234 2371.579521 2288.415094 2466.839333 0.908962745 0.899080948 1.030459648 1.098864742 0.850183906 0.943293796 0.954940682 0.961383861 0.927670912 1 11.26844804 -5.434271946 0.003433728 1.901090626 1.58E-08 0 0.067847707 155341.459 132.1006025 36010.99581 37130.73383 3.68E-06 5.434271946 -1.901090611 SQTTS(ph)LENGVFPR ddPTM_HeLa_CUDC101_4h_R1 1 SQTTSLENGVFPR 13 0 A0A087WX11;J3KNG8;Q8TF40-3;Q8TF40;Q8TF40-2 A0A087WX11 FNIP1 Folliculin-interacting protein 1 1 0 SQT(0.001)T(0.078)S(0.922)LENGVFPR 206.46 1.40E-23 11534000 3420.9 2578.2 2803.1 2922.3 2701.7 2402.5 2116.3 2040.3 2849.2 2489.3 TRUE FALSE FALSE 3019.907288 2657.631286 2954.644065 3041.484025 2502.400974 2356.676315 2197.9264 2272.559505 2731.75477 2474.493533 1.220414298 1.074010197 1.194039922 1.229133956 1.011278041 0.952387341 0.888232833 0.918393794 1.103965209 1 11.27291756 -5.434190878 3.093746266 1.119340779 0.915449632 0.65990541 0.069380561 0.171998342 3.156720168 0.013831649 0.033120674 3.68E-06 5.434190878 -0.203891147 MRT(ph)CS(ph)S(ph)SPPVPGSVVGAAWS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 MRTCSSSPPVPGSVVGAAWSSR 22 1 A0A087WYI2 A0A087WYI2 EVL 4 0 MRT(0.966)CS(0.931)S(0.747)S(0.335)PPVPGS(0.022)VVGAAWS(0.581)S(0.419)R 49.588 0.02595 3384800 991.99 842.35 697.6 831.54 927.49 965.76 864.05 795.89 731.44 837.92 TRUE FALSE FALSE 875.710436 868.3018051 735.3143661 865.4537954 859.0709105 947.3397371 897.3766979 886.4909005 701.2897336 832.9360146 1.05135379 1.042459192 0.882798142 1.039039951 1.031376835 1.137349953 1.077365707 1.064296519 0.841949107 1 9.702061863 -5.432733732 6.02679934 1.016173934 1.091321927 0.249337639 0.073428986 0.216469542 11.75299097 0.007194994 0.016203388 3.69E-06 5.432733732 0.075147993 ALQTS(ph)PQPPEGPGLPR ddPTM_HeLa_CUDC101_4h_R1 2 ALQTSPQPPEGPGLPR 16 0 H7C398;A0A2R8YGT1;F8W9A8;B7WPL9;Q6PFW1-5;Q6PFW1-7;Q6PFW1-4;Q6PFW1-3;Q6PFW1-2;Q6PFW1 H7C398 PPIP5K1 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 1 0 ALQT(0.104)S(0.896)PQPPEGPGLPR;ALQT(0.23)S(0.77)PQPPEGPGLPR ; 158.65 9.85E-08 27455000 5088 4114.9 4080.5 4210.5 4647 3487.7 3830 3564.2 4448.2 4455.9 TRUE FALSE FALSE 4491.592353 4241.675192 4301.104173 4382.222389 4304.200068 3421.177933 3977.724383 3969.934121 4264.843313 4429.396109 1.014041698 0.957619298 0.971036247 0.989349853 0.97173519 0.772380218 0.898028599 0.896269835 0.962849835 1 12.1128943 -5.430168794 6.668070993 0.997986428 0.860207633 0.686732579 0.037952593 0.089884508 5.48970163 0.005152203 0.011576209 3.71E-06 5.430168794 -0.137778794 TPSS(ph)PCPASK ddPTM_HeLa_CUDC101_4h_R1 1 TPSSPCPASK 10 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 T(0.057)PS(0.247)S(0.696)PCPASK 107.03 0.009501 127520000 16136 11599 14573 15095 13064 11911 11754 4535.5 14832 16011 TRUE FALSE FALSE 14244.56254 11956.35144 15360.86046 15710.63935 12100.29475 11683.81752 12207.35572 5051.802987 14220.61868 15915.76586 0.89499699 0.7512269 0.96513486 0.987111741 0.76027097 0.73410338 0.766997694 0.317408727 0.893492579 1 13.95816896 -4.116359294 0.746868343 0.936107694 1.59E-24 0.750021841 0.095104758 1.180436762 0.402908825 0.016035929 0.970016981 7.65E-05 4.116359294 -0.936107694 down RNDFQLIGIQDGYLSLLQDSGEVR ddPTM_HeLa_CUDC101_4h_R1 2 RNDFQLIGIQDGYLSLLQDSGEVR 24 1 I3L397;I3L504;P63241;P63241-2 I3L397 EIF5A Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1 0 0 ; ; 174.53 3.09E-11 42838000 1462.63 1650.72 1490.84 1785.29 2324.8 1789.43 1643.96 1232.93 1868.35 1818.85 FALSE FALSE TRUE 1291.182729 1701.576727 1571.43932 1858.101843 2153.304136 1755.299604 1707.368088 1373.281768 1791.335822 1808.031399 0.714137337 0.941121226 0.869143822 1.027693348 1.190966117 0.970834691 0.944324357 0.759545309 0.990765881 1 10.82020402 -6.274937334 22.39380723 0.868781539 0.988123142 0.04801661 0.125866034 307.3636678 509931.8694 0.022484152 0.034503976 5.31E-07 6.274937334 0.119341602 GNKSPS(ph)PPDGS(ph)PAATPEIR ddPTM_HeLa_CUDC101_4h_R1 1 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-11;O00499-2;O00499;O00499-9;O00499-10;O00499-7;O00499-8;O00499-4;O00499-3;O00499-5 O00499-6 BIN1 Myc box-dependent-interacting protein 1 2 0 GNKS(0.12)PS(0.931)PPDGS(0.948)PAATPEIR 136.81 0.00059354 14888000 4269.6 3750.1 3897.7 4435.3 4184.6 2970.3 3184.7 3269.7 4214.3 4262.4 TRUE FALSE FALSE 3769.12396 3865.636136 4108.421452 4616.190705 3875.910395 2913.646476 3307.534946 3641.909431 4040.58477 4237.047055 0.889563866 0.912342036 0.96964263 1.089482992 0.914766899 0.687659693 0.780622661 0.859539529 0.953632263 1 12.04884344 -5.42986002 6.4396814 0.95614004 0.77801307 0.641366126 0.064153092 0.134901041 7.833672569 0.010246592 0.023040938 3.72E-06 5.42986002 -0.178126971 RNEIDAEPPAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 RNEIDAEPPAKR 12 2 Q8TDN6 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog 0 1 ; RNEIDAEPPAK(1)R;RNEIDAEPPAK(1)R 117.93 0.0034604 11434100 3235.79 3286.4 3247.06 2912.7 2919.44 3336.04 3300.67 3573.97 3876.05 2980.6 FALSE TRUE FALSE 2856.495601 3387.650089 3422.605885 3031.492496 2704.078728 3272.410595 3427.977948 3980.816298 3716.277578 2962.871259 0.964097104 1.143367292 1.155165239 1.023160384 0.912654817 1.10447276 1.156978366 1.343567084 1.254282503 1 11.53278022 -4.377014272 1.367814618 1.007435046 1.436583249 0.272698603 0.108028108 0.521440981 0.993336268 0.012080843 0.289408067 4.20E-05 4.377014272 0.429148204 YSPTS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 YSPTSPK 7 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YS(0.001)PT(0.204)S(0.795)PK;YS(0.001)PT(0.203)S(0.797)PK ; 94.309 0.028497 316530000 22451.9 17038 20056.1 19275.8 19384.9 17513.3 16909.8 14126.4 17780 18238.1 TRUE FALSE FALSE 19820.12232 17562.92058 21140.39343 20061.95044 17954.91455 17179.26298 17562.01665 15734.49228 17047.10087 18129.61897 1.093245388 0.968741848 1.166069373 1.10658423 0.990363591 0.947579925 0.968691988 0.867888746 0.94029008 1 14.14606098 -5.429642283 2.954577562 1.052775471 0.930746984 0.371004917 0.067857362 0.19432175 3.261355876 0.009114195 0.022083532 3.72E-06 5.429642283 -0.122028487 VISDSESDIGGS(ph)DVEFKPDTK ddPTM_HeLa_CUDC101_4h_R1 1 VISDSESDIGGSDVEFKPDTK 21 1 A0A087WWJ1;A0A494C0M1;P52701-2;P52701;P52701-3 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 VIS(0.001)DS(0.003)ES(0.003)DIGGS(0.991)DVEFKPDT(0.003)K 88.976 0.00043915 19866000 2497.9 1926.2 1604.6 1910.5 1561.7 1806.1 1182 944.98 2218.2 2232.5 TRUE FALSE FALSE 2205.099949 1985.543939 1691.34953 1988.418448 1446.496502 1771.651652 1227.590136 1052.552703 2126.764857 2219.220991 0.993636937 0.894703118 0.762136595 0.895998396 0.651803722 0.79832142 0.553162637 0.47428927 0.958338474 1 11.11583762 -4.114046432 0.318580329 1.021971163 3.27E-20 0.832179129 0.072259847 1.872099616 0.127025539 0.026881629 0.753573576 7.69E-05 4.114046432 -1.021971163 down RNEVLDR ddPTM_HeLa_CUDC101_4h_R1 1 RNEVLDR 7 1 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 107.01 0.015577 8697700 2045.4 1216.1 2355.6 2893.8 1633.7 1254 2066.3 1085.5 2008.7 2014.1 FALSE FALSE TRUE 1805.641313 1253.5666 2482.950861 3011.821672 1513.185206 1230.082039 2145.997883 1209.068932 1925.900536 2002.120044 0.90186466 0.626119599 1.240160833 1.504316228 0.755791447 0.614389753 1.071862744 0.603894325 0.9619306 1 10.96731276 -4.24888756 23.39292004 0.956871057 0.603893775 0.148789176 0.257916037 1246.221507 2322487.271 0.035184141 0.766622574 5.64E-05 4.24888756 -0.352977282 IMGT(ph)S(ph)PLQIDRAEDRS(ph)IFS(ph)AVLDELK ddPTM_HeLa_CUDC101_4h_R1 1 IMGTSPLQIDRAEDRSIFSAVLDELK 26 2 P31327-2;P31327;P31327-3;A0A669KBF2 P31327-2 CPS1 "Carbamoyl-phosphate synthase [ammonia], mitochondrial" 4 0 IMGT(1)S(1)PLQIDRAEDRS(1)IFS(1)AVLDELK 42.325 0.0029803 0 175.74 218.08 166.01 195.76 212.25 332.01 195.91 172.83 264.94 234.65 TRUE FALSE FALSE 155.1400236 224.7987863 174.9850028 203.7439389 196.5927404 325.6774624 203.4663143 192.5042686 254.0190611 233.2542914 0.665111123 0.963749841 0.750189854 0.873484204 0.842825824 1.396233529 0.872293981 0.825297865 1.089022026 1 7.865759814 -5.429201802 23.44898108 0.843227291 1.032736098 0.091741396 0.184856828 43.34979706 10847.08816 0.026299412 0.058807262 3.72E-06 5.429201802 0.189508807 RNLEVLR ddPTM_HeLa_CUDC101_4h_R1 4 RNLEVLR 7 1 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 0 0 ;;; ;;; 157.33 0.0012853 30646300 11690 9552.6 7787.8 10073.7 9736.6 9779.2 8870.5 8578.3 8007.4 6470.9 FALSE FALSE TRUE 10319.71592 9846.904283 8208.832025 10484.54903 9018.350416 9592.678053 9212.638156 9554.818997 7677.331583 6432.410799 1.60433098 1.530826403 1.276167254 1.629956381 1.402017175 1.491303704 1.432221673 1.485418033 1.193538756 1 12.65114383 -9.356578164 0.993313403 0.989599181 1.485930904 0.646301503 0.110652964 0.201781035 0.344381489 0.073175238 0.017531161 4.40E-10 9.356578164 0.496331723 QEQLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 QEQLSPK 7 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 QEQLS(1)PK;QEQLS(1)PK ; 106.4 0.015046 104623000 11440.1 7808.6 11990.7 13035.4 9743.7 8051.7 8021.6 5008.6 11849.5 11280.6 TRUE FALSE FALSE 10099.10882 8049.173711 12638.95351 13567.03996 9024.926663 7898.127238 8330.995799 5578.758779 11361.05859 11213.50249 0.900620375 0.717810846 1.12711916 1.209884242 0.804826741 0.704340793 0.742943234 0.497503682 1.013158788 1 13.45294935 -5.426837738 3.479644456 0.963992839 0.657708782 0.546010396 0.139667463 0.161606946 3.647574144 0.020620809 0.048542622 3.74E-06 5.426837738 -0.306284057 NSFNNPAYYVLEGVPHQLLPPEPPS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 1 NSFNNPAYYVLEGVPHQLLPPEPPSPAR 28 0 O15357;A0A0A0MTP6;O15357-2 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 0 NSFNNPAYYVLEGVPHQLLPPEPPS(1)PAR 108.26 2.25E-10 74271000 871.11 725.66 738.58 714.56 803.76 444.64 468.02 737.52 701.13 815.52 TRUE FALSE FALSE 768.9998063 748.0167245 778.5098689 743.7028454 744.4682261 436.1592328 486.0716882 821.4762956 672.2291246 810.6692508 0.948598711 0.922715058 0.960329836 0.917393678 0.918337812 0.538023654 0.599593099 1.013331016 0.829227362 1 9.662969611 -5.426260863 6.708077882 0.964023449 0.705883289 0.353253226 0.125584408 0.149194215 8.859290942 0.015995424 0.035942324 3.75E-06 5.426260863 -0.25814016 GRLS(ph)PVPVPR ddPTM_HeLa_CUDC101_4h_R1 2 GRLSPVPVPR 10 1 Q9UKM9-2;Q9UKM9;Q5QPM0;Q5QPL9;Q5QPM1 Q9UKM9-2 RALY RNA-binding protein Raly 1 0 GRLS(1)PVPVPR;GRLS(1)PVPVPR ; 72.496 0.03365 2399580000 3089.2 2623.8 2261.1 2650.8 2521.9 2245.6 2108.18 1837 2670 2315.33 TRUE FALSE FALSE 2727.088659 2704.636168 2383.341905 2758.911082 2335.864461 2202.768921 2189.493209 2046.116655 2559.94147 2301.558314 1.184887927 1.175132584 1.035534008 1.198714395 1.014905617 0.957077172 0.951309031 0.889013605 1.11226444 1 11.16839528 -5.424020456 3.102269107 1.099520485 0.933015445 0.62106349 0.063985294 0.183973824 3.371860056 0.012063136 0.029014578 3.77E-06 5.424020456 -0.16650504 STFAGS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 STFAGSPER 9 0 H0YE03;H7C3G7;Q2TBE0-3;Q2TBE0-2;Q2TBE0 H0YE03 CWF19L2 CWF19-like protein 2 1 0 S(0.065)T(0.001)FAGS(0.935)PER;S(0.003)TFAGS(0.997)PER ; 97.472 0.020113 54295000 9275.6 6817.9 6060.2 7158.4 6324.9 6533.8 5529 4973.2 6281.6 6175.3 TRUE FALSE FALSE 8188.328229 7027.951418 6387.832743 7450.350493 5858.324728 6409.178651 5742.255382 5539.328986 6022.669789 6138.569041 1.333914822 1.144884316 1.040606158 1.21369499 0.954346964 1.0440835 0.935438755 0.902381149 0.9811195 1 12.58368667 -5.421303099 1.03521106 1.15656714 0.91643105 0.270382398 0.110577063 0.561796174 1.071281777 0.021792266 0.093908319 3.79E-06 5.421303099 -0.24013609 (ac)SDQDHS(ph)MDEMTAVVK ddPTM_HeLa_CUDC101_4h_R1 1 SDQDHSMDEMTAVVK 15 0 P08047;H3BUU5;P08047-3 P08047 SP1 Transcription factor Sp1 1 0 S(0.133)DQDHS(0.867)MDEMTAVVK 109.55 9.53E-144 35494000 2579.2 2055 1847.2 2108.6 3109.8 3158.5 3892.8 2758.4 2114.5 2226.2 TRUE FALSE FALSE 2276.870086 2118.312114 1947.065219 2194.597822 2880.39625 3098.256875 4042.9466 3072.405106 2027.339415 2212.958463 1.028880625 0.957230851 0.87984716 0.991703124 1.301604299 1.400051978 1.826941927 1.388369984 0.916121766 1 11.11176066 -5.419484364 1.865607066 0.996282686 1.595998395 0.823334858 0.120654073 0.094433837 0.636724295 0.016164547 0.046113724 3.81E-06 5.419484364 0.599715709 SYSVGASGSS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 SYSVGASGSSSR 12 0 Q8N684-2;Q8N684;Q8N684-3;F5H669 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 0 SYSVGASGS(0.084)S(0.64)S(0.276)R 106.79 0.0065609 15240000 1719.2 1411 1456.1 1482.7 1546.4 1181.9 1360.3 1032 1564.7 1446.1 TRUE FALSE FALSE 1517.677982 1454.471238 1534.82117 1543.170915 1432.325153 1159.357227 1412.767227 1149.478709 1500.202404 1437.498533 1.055777065 1.011807111 1.067702773 1.073511297 0.996401123 0.806510198 0.982795596 0.799638179 1.043620129 1 10.48934477 -5.419360202 5.550363451 1.032253796 0.876019832 0.698176617 0.052235123 0.099130195 4.385686874 0.007011988 0.015857979 3.81E-06 5.419360202 -0.156233964 DELHIVEAEAMNYEGS(ph)PIKVTLATLK ddPTM_HeLa_CUDC101_4h_R1 7 DELHIVEAEAMNYEGSPIKVTLATLK 26 1 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 1 0 DELHIVEAEAMNY(0.442)EGS(0.557)PIKVT(0.001)LATLK;DELHIVEAEAMNY(0.451)EGS(0.529)PIKVT(0.018)LAT(0.002)LK;DELHIVEAEAMNY(0.202)EGS(0.792)PIKVT(0.006)LATLK;DELHIVEAEAMNY(0.122)EGS(0.858)PIKVT(0.017)LAT(0.003)LK;DELHIVEAEAMNY(0.003)EGS(0.997)PIKVTLATLK;DELHIVEAEAMNY(0.004)EGS(0.996)PIKVTLATLK;DELHIVEAEAMNY(0.29)EGS(0.71)PIKVTLATLK ;;;;;; 129.26 5.93E-11 5518621300 20569.79 17941.54 16823.94 16358.66 17456.36 17792.31 14757.4 14598.75 19453.45 19569.76 TRUE FALSE FALSE 18158.6304 18494.29758 17733.49309 17025.83686 16168.6391 17452.95133 15326.59786 16260.61269 18651.57056 19453.3582 0.933444509 0.950699483 0.911590323 0.875213251 0.831148994 0.897169072 0.787863859 0.835876897 0.958784101 1 14.24773161 -5.418115587 0.209433274 1.018232577 0.708122462 0.783593778 0.029161024 2.035549827 0.132271769 0.037100452 0.174172738 3.82E-06 5.418115587 -0.310110115 KTPSKPPAQLSPS(ph)VPK ddPTM_HeLa_CUDC101_4h_R1 1 KTPSKPPAQLSPSVPK 16 2 F5H8D7;P18887;M0QYS5 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 KTPS(0.005)KPPAQLS(0.204)PS(0.791)VPK 74.296 0.021187 52961000 2019.2 2298.9 2388.1 2032.7 2201.7 1578.7 1636.1 1581.7 1929.4 2435.8 TRUE FALSE FALSE 1782.512437 2369.726384 2517.20791 2115.602292 2039.284977 1548.588928 1699.204925 1761.754335 1849.869315 2421.311753 0.736176345 0.97869528 1.039605043 0.873742214 0.842223218 0.639566105 0.701770403 0.727603264 0.763994687 1 11.24157313 -5.417501561 3.93683164 0.893823153 0.691675361 0.501503619 0.092961671 0.188288965 5.140804423 0.016599834 0.038554559 3.82E-06 5.417501561 -0.202147792 YRNEGS(ph)PSPR ddPTM_HeLa_CUDC101_4h_R1 1 YRNEGSPSPR 10 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 Y(0.001)RNEGS(0.983)PS(0.016)PR 71.888 0.034372 2570800 566.02 488.1 586.81 541.85 494.38 360.97 236.5 329.17 609.22 641.88 TRUE FALSE FALSE 499.6719936 503.1377825 618.5347236 563.9489851 457.9105723 354.0850987 245.6218842 366.6413822 584.1076937 638.0620692 0.783108757 0.788540499 0.969395853 0.883846592 0.717658351 0.554938329 0.384949829 0.57461711 0.91544024 1 9.317552963 -5.415995019 2.033421077 0.891738893 0.478424179 0.829942983 0.078362099 0.118019552 0.946986983 0.014802814 0.040710597 3.84E-06 5.415995019 -0.413314714 ELVSSS(ph)S(ph)SGSDSDSEVDKK ddPTM_HeLa_CUDC101_4h_R1 1 ELVSSSSSGSDSDSEVDKK 19 1 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 2 0 ELVS(0.007)S(0.028)S(0.584)S(0.297)S(0.313)GS(0.284)DS(0.322)DS(0.165)EVDKK 60.489 0.017205 10804000 1735.4 1503.3 1613.4 1661.2 1322.7 1200.9 887.01 826.58 1648.5 1772.8 TRUE FALSE FALSE 1531.979043 1549.614891 1700.625284 1728.950916 1225.127056 1177.994833 921.2222728 920.674526 1580.548132 1762.255307 0.869328659 0.879336204 0.965027756 0.981101268 0.695204067 0.668458667 0.522751879 0.522441058 0.896889416 1 10.78320723 -5.41214396 1.570417107 0.937617516 0.532679129 0.890636865 0.057537299 0.100927401 0.477022079 0.010132026 0.031979914 3.87E-06 5.41214396 -0.404938387 KDS(ph)LTQAQEQGNLLN ddPTM_HeLa_CUDC101_4h_R1 1 KDSLTQAQEQGNLLN 15 1 Q5JTD0-4;Q5JTD0-2;Q5JTD0 Q5JTD0-4 TJAP1 Tight junction-associated protein 1 1 0 KDS(0.78)LT(0.22)QAQEQGNLLN 83.751 0.033859 115340000 5939.3 4502.2 4665.4 4828.7 5329.1 4494.7 4402.3 4348.8 5411.3 4929.2 TRUE FALSE FALSE 5243.104257 4640.907446 4917.625636 5025.635257 4935.98291 4408.971086 4572.098186 4843.849814 5188.243924 4899.880899 1.070047286 0.94714699 1.003621463 1.025664779 1.007367936 0.899811889 0.933103943 0.988564807 1.058851027 1 12.25853097 -5.410882802 5.689234872 1.023506632 0.940218585 0.453991002 0.037750182 0.158609305 6.950975979 0.005950894 0.01345312 3.88E-06 5.410882802 -0.083288047 GS(ph)GGGGGGGGQGSTNYGK ddPTM_HeLa_CUDC101_4h_R1 1 GSGGGGGGGGQGSTNYGK 18 0 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 0 GS(0.993)GGGGGGGGQGSTNY(0.007)GK 161.1 2.41E-05 25577000 4673.6 2124.8 4948.9 4994 2886.7 2463.4 2615.3 891.41 4610 5770.5 TRUE FALSE FALSE 4125.767693 2190.262569 5216.452504 5197.676906 2673.753892 2416.414749 2716.172997 992.8845112 4419.973849 5736.176809 0.719253926 0.381833169 0.909395348 0.906122157 0.466121248 0.421258763 0.473516261 0.173091685 0.770543516 1 12.48587378 -5.410590095 0.20001585 1.043126257 7.87E-22 0.487328502 0.187202298 4.964768705 0.301012596 0.30785519 1.388526705 3.89E-06 5.410590095 -1.043126257 TRT(ph)PASINATPANINLADLTR ddPTM_HeLa_CUDC101_4h_R1 2 TRTPASINATPANINLADLTR 21 1 Q7KZ85-2;Q7KZ85 Q7KZ85-2;Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 0 T(0.373)RT(0.626)PASINATPANINLADLTR;T(0.152)RT(0.847)PAS(0.001)INATPANINLADLTR ; 126.29 1.06E-05 34778000 1975.46 1988.46 1769.02 1699.32 1822.12 1453.9 1541.51 1130 1959.93 1934.5 TRUE FALSE FALSE 1743.899573 2049.722096 1864.658572 1768.625615 1687.705838 1426.16928 1600.966557 1258.634632 1879.140856 1922.993508 0.906867114 1.065901724 0.969664518 0.919725214 0.877645104 0.741640195 0.832538722 0.654518399 0.977195632 1 10.90913818 -5.408649996 1.264964093 0.96588796 0.728283065 0.776625055 0.055695042 0.192126956 0.572671974 0.009190855 0.033908206 3.90E-06 5.408649996 -0.237604895 TTS(ph)PGGRPSAR ddPTM_HeLa_CUDC101_4h_R1 1 TTSPGGRPSAR 11 1 A1L390-3;A1L390;G3V311;A1L390-2 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 T(0.016)T(0.05)S(0.934)PGGRPSAR 71.933 0.031625 42506000 3240.4 1756.2 3632.1 3714.5 2422.3 2264.4 2892.5 1283.9 3427.6 3754.1 TRUE FALSE FALSE 2860.565224 1810.30644 3828.462313 3865.993365 2243.611755 2221.210343 3004.064694 1430.053986 3286.312877 3731.770446 0.766543726 0.485106591 1.025910454 1.035967625 0.601219123 0.595216232 0.804997182 0.383210599 0.880631037 1 11.86564453 -5.408197731 0.071196833 1.389637787 1.35E-17 0.261295665 0.19043673 66.41739551 1.189460292 8.258489468 15.46909219 3.91E-06 5.408197731 -1.389637787 HSQPS(ph)PEPHS(ph)PTEPPAWGSSIVK ddPTM_HeLa_CUDC101_4h_R1 2 HSQPSPEPHSPTEPPAWGSSIVK 23 0 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7 Q5VZ89-5 DENND4C DENN domain-containing protein 4C 2 0 HS(0.061)QPS(0.892)PEPHS(0.961)PT(0.086)EPPAWGSSIVK;HS(0.018)QPS(0.986)PEPHS(0.992)PT(0.004)EPPAWGSSIVK ; 105.44 5.60E-05 69026000 7841 6465.1 5776.6 6009.1 7944.1 8026.1 7537.4 7708.9 7093.5 6515 TRUE FALSE FALSE 6921.889866 6664.282068 6088.900469 6254.177072 7358.07957 7873.015515 7828.120043 8586.450016 6801.102928 6476.24849 1.068811655 1.029034336 0.940189444 0.965709868 1.136163873 1.215675329 1.208743002 1.325837023 1.050160898 1 12.66094263 -5.407598996 2.304226018 1.021365154 1.254225876 0.835730642 0.047823168 0.101023182 1.040437019 0.007749998 0.020419991 3.91E-06 5.407598996 0.232860722 S(ph)LSDSES(ph)DDSKSK ddPTM_HeLa_CUDC101_4h_R1 1 SLSDSESDDSKSK 13 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 2 0 S(0.951)LS(0.049)DS(0.024)ES(0.974)DDS(0.002)KSK 188.63 4.01E-10 22145000 8017.4 6005 7702.3 7438.6 7313.4 5720.7 6268 4844.6 7882.7 7025.3 TRUE FALSE FALSE 7077.612526 6190.006932 8118.709636 7741.97826 6773.905052 5611.587179 6509.75886 5396.089681 7557.77177 6983.513203 1.013474496 0.886374344 1.162553775 1.108607951 0.969985286 0.803547873 0.93216103 0.772689837 1.082230612 1 12.76973728 -5.406152967 4.830353915 1.016699492 0.847026805 0.54811479 0.081402282 0.142851255 5.068790596 0.011029833 0.025183253 3.93E-06 5.406152967 -0.169672686 GSST(ph)PTKGIENK ddPTM_HeLa_CUDC101_4h_R1 2 GSSTPTKGIENK 12 1 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5;H0YBE9 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 GS(0.004)S(0.035)T(0.958)PT(0.004)KGIENK;GS(0.005)S(0.042)T(0.953)PTKGIENK ; 141.73 0.020398 23996000 5125 5941.7 6594.6 5568.2 8824.8 6572.1 6585.3 8690.5 6121.9 4853.1 TRUE FALSE FALSE 4524.255269 6124.756734 6951.124024 5795.295264 8173.812085 6446.748142 6839.297227 9679.791392 5869.552691 4824.233545 0.937818459 1.269581308 1.44087635 1.201288289 1.694323463 1.336325881 1.41769613 2.006493115 1.216680875 1 12.23608404 -5.40600114 0.354698501 0.929213126 1.986755352 0.544934759 0.202518938 1.304551995 0.205222847 0.074733408 0.535020992 3.93E-06 5.40600114 1.057542226 MPDVHFKS(ph)PQISMSDIDLNLK ddPTM_HeLa_CUDC101_4h_R1 1 MPDVHFKSPQISMSDIDLNLK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPDVHFKS(0.992)PQIS(0.006)MS(0.002)DIDLNLK 63.63 0.0058625 11208000 3132.1 2503.7 2093.5 2147.1 2616.9 2372.3 2319.5 1104.6 2308.5 3385.4 TRUE FALSE FALSE 2764.959986 2580.836029 2206.680942 2234.668019 2423.856501 2327.05233 2408.963892 1230.343199 2213.342653 3365.26349 0.821617681 0.766904594 0.65572308 0.66403954 0.720257569 0.691491866 0.715832177 0.365600852 0.657702631 1 11.71650375 -5.405701149 0.097211616 1.315210366 4.24E-11 0.19557724 0.134986853 11.88494475 0.29728427 1.258262612 2.915142423 3.93E-06 5.405701149 -1.315210366 NMT(ph)T(ph)IT(ph)TLI ddPTM_HeLa_CUDC101_4h_R1 1 NMTTITTLI 9 0 D6RDK8 D6RDK8 IQGAP2 3 0 NMT(0.959)T(0.532)IT(0.977)T(0.532)LI 43.604 0.039852 9774100 2073.6 1659.8 1695 2039.4 1936.8 1175.2 1594 1208.9 1960.4 1913 TRUE FALSE FALSE 1830.535751 1710.936471 1786.636827 2122.575547 1793.926123 1152.785018 1655.481114 1346.516289 1879.591482 1901.621391 0.962618406 0.899725087 0.939533409 1.116192507 0.943366609 0.606211638 0.870562943 0.708088527 0.988415197 1 10.89301432 -5.40522395 6.756002066 0.98170848 0.743815233 0.674367297 0.079850952 0.106023318 5.517760074 0.010626601 0.023892426 3.93E-06 5.40522395 -0.237893248 DLS(ph)PEPAPDEGPR ddPTM_HeLa_CUDC101_4h_R1 1 DLSPEPAPDEGPR 13 0 Q8TBE0-3;Q8TBE0-2;Q8TBE0 Q8TBE0-3 BAHD1 Bromo adjacent homology domain-containing 1 protein 1 0 DLS(1)PEPAPDEGPR 127.78 0.0013939 23798000 2968.8 2258.9 2606.8 2433.7 2375.3 2165.8 2044.2 1623.9 2006.9 2477.3 TRUE FALSE FALSE 2620.801764 2328.494032 2747.731493 2532.956805 2200.078851 2124.490973 2123.045479 1808.758212 1924.174733 2462.564909 1.064256928 0.945556409 1.115800636 1.028584788 0.893409487 0.862714711 0.862127723 0.73450174 0.781370158 1 11.26594604 -5.403733978 1.39426312 1.031607841 0.798800534 0.34951368 0.094806368 0.156058637 0.573216173 0.008048519 0.027726691 3.95E-06 5.403733978 -0.232807308 SWSYNGYYSDLS(ph)TAR ddPTM_HeLa_CUDC101_4h_R1 1 SWSYNGYYSDLSTAR 15 0 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 SWSYNGYYS(0.365)DLS(0.634)TAR 207.21 2.13E-23 6833000 1110.9 733.47 1211.6 838.22 844.99 647.96 563.69 434.59 1078.2 968.93 TRUE FALSE FALSE 980.681986 756.0673413 1277.102761 872.4062347 782.6567712 635.6012426 585.4317121 484.0619689 1033.75614 963.1667613 1.018185039 0.784980724 1.32594148 0.905768627 0.812586981 0.659907784 0.607819679 0.502573374 1.073288844 1 9.911641796 -5.401939032 1.524239985 1.011804395 0.555801354 0.695338804 0.129180544 0.165131423 0.731919522 0.018105572 0.058775788 3.96E-06 5.401939032 -0.456003041 ASLGS(ph)LEGEAEAEAS(ph)SPKGK ddPTM_HeLa_CUDC101_4h_R1 3 ASLGSLEGEAEAEASSPKGK 20 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 AS(0.014)LGS(0.986)LEGEAEAEAS(0.681)S(0.32)PKGK;AS(0.013)LGS(0.987)LEGEAEAEAS(0.955)S(0.045)PKGK;AS(0.016)LGS(0.981)LEGEAEAEAS(0.55)S(0.453)PKGK ;; 118.08 3.32E-05 176556000 6168.7 7577.5 6415.7 6565.7 10087.1 8592.9 8794.1 9491.5 7356.4 7827.9 TRUE FALSE FALSE 5445.614337 7810.953793 6762.552148 6833.477625 9342.994729 8429.004749 9133.291383 10571.97399 7053.166078 7781.339303 0.699829955 1.003805835 0.869073033 0.878187849 1.20069237 1.083233158 1.173742852 1.358631668 0.906420579 1 12.92580277 -5.39433174 0.878494498 0.862457847 1.295571553 0.663552937 0.105982136 0.40548194 0.519356165 0.022468612 0.115961227 4.03E-06 5.39433174 0.433113705 RNSSEASSGDFLDLK ddPTM_HeLa_CUDC101_4h_R1 1 RNSSEASSGDFLDLK 15 1 Q9UK76-3;Q9UK76;J3KSH8;J3KT51;Q9UK76-2 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 0 0 130.95 6.72E-05 0 4056.7 3937.6 3401.4 4148.5 4416.1 5544.9 4646.6 4683.3 4081.3 5359.3 FALSE FALSE TRUE 3581.179776 4058.912789 3585.289973 4317.693761 4090.333101 5439.140271 4825.820919 5216.427941 3913.067087 5327.422645 0.672216194 0.761890516 0.672987711 0.810465782 0.767788361 1.020970295 0.905845329 0.979165403 0.734514107 1 12.37922202 -5.264115139 24.92696135 0.815089089 0.962378841 0.420067523 0.096586466 284.7018827 2652254.252 0.019548553 0.045646843 5.44E-06 5.264115139 0.147289753 SSS(ph)KESLVR ddPTM_HeLa_CUDC101_4h_R1 1 SSSKESLVR 9 1 Q13439-3;Q13439-4;Q13439;Q13439-5;E7EVX2;Q86W71 Q13439-3 GOLGA4 Golgin subfamily A member 4 1 0 SSS(0.897)KES(0.103)LVR 141.71 0.0081711 246560000 5014.4 4192 4247.7 4758.7 4465.7 3863.5 3629.4 3158.2 4895.7 4556.2 TRUE FALSE FALSE 4426.619633 4321.150551 4477.343511 4952.780355 4136.274208 3789.810175 3769.387174 3517.716722 4693.897174 4529.09952 0.977373011 0.954086024 0.988572561 1.093546373 0.913266355 0.836769022 0.832259737 0.7766923 1.036386406 1 12.14500853 -5.394081896 3.090135791 0.992827121 0.81471395 0.810840129 0.041274821 0.079808823 1.439579827 0.0055547 0.013568787 4.04E-06 5.394081896 -0.178113171 LVNTTIT(ph)PEPEPKPQPNSR ddPTM_HeLa_CUDC101_4h_R1 1 LVNTTITPEPEPKPQPNSR 19 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 LVNT(0.001)T(0.005)IT(0.995)PEPEPKPQPNSR 133.51 5.06E-05 35253000 1645.5 1229.6 1125.9 978.01 1320.3 1296.6 772.81 898.63 1333.6 1307.8 TRUE FALSE FALSE 1452.616984 1267.482519 1186.76956 1017.897475 1222.904099 1271.869515 802.6175406 1000.926407 1278.628444 1300.021147 1.117379504 0.974970693 0.912884811 0.782985321 0.940680159 0.978345251 0.617388065 0.769930865 0.983544342 1 10.34431938 -5.393457299 0.493895951 1.055471354 0.659835184 0.487006286 0.098122422 1.008315023 0.320570516 0.025525121 0.192108394 4.04E-06 5.393457299 -0.39563617 LSLEGDHSTPPS(ph)AYGSVK ddPTM_HeLa_CUDC101_4h_R1 1 LSLEGDHSTPPSAYGSVK 18 0 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4;H0YMW4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LSLEGDHSTPPS(0.745)AY(0.001)GS(0.254)VK 89.659 0.0034512 12493000 3399.7 1556.5 1284.4 1337.8 3596.4 3312.1 4305 3136.8 2131.4 2315.4 TRUE FALSE FALSE 3001.19232 1604.45392 1353.838549 1392.361266 3331.100737 3248.927211 4471.045292 3493.880633 2043.54279 2301.627898 1.303943319 0.69709527 0.588209132 0.604946294 1.44728031 1.411577959 1.942557829 1.51800412 0.887868448 1 11.1684389 -5.39335465 2.581307684 1.031540353 1.677173967 0.574691584 0.280664631 0.205887813 2.648555688 0.046874487 0.120099021 4.04E-06 5.39335465 0.645633614 KRS(ph)QTY(ph)ESDGK ddPTM_HeLa_CUDC101_4h_R1 1 KRSQTYESDGK 11 2 Q13443 Q13443 ADAM9 Disintegrin and metalloproteinase domain-containing protein 9 2 0 KRS(0.507)QT(0.53)Y(0.664)ES(0.299)DGK 73.848 0.0028427 0 2328.6 1269.2 2026.3 1945.6 1247.7 1486.7 1560.7 956.93 1621.1 1992.9 TRUE FALSE FALSE 2055.645038 1308.302548 2135.847907 2024.949978 1155.659657 1458.343675 1620.896722 1065.863043 1554.277572 1981.046142 1.037656314 0.660409932 1.078141423 1.022161945 0.583358273 0.736148262 0.818202407 0.538030397 0.784574139 1 10.95204677 -5.389396627 0.473670414 1.019370325 0.549288935 0.238473642 0.164698612 1.281081967 0.369406269 0.037077287 0.282531508 4.08E-06 5.389396627 -0.47008139 GMGPGT(ph)PAGYGR ddPTM_HeLa_CUDC101_4h_R1 4 GMGPGTPAGYGR 12 0 P23246 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR ;;; 135.1 0.0067708 324445000 8224 6595.7 7114.4 6467 6357.2 5722.5 6008.3 4208.97 6303.3 7426.4 TRUE FALSE FALSE 7259.995187 6798.905699 7499.025984 6730.752213 5888.242021 5613.352847 6240.042144 4688.102132 6043.475306 7382.227443 0.983442361 0.920982962 1.015821585 0.911750859 0.797624032 0.760387416 0.845279042 0.635052519 0.818652006 1 12.84984047 -5.387306018 0.626830968 0.995702762 0.671597052 0.555340282 0.076340794 0.366447506 0.204778251 0.009680536 0.066167813 4.10E-06 5.387306018 -0.32410571 DSFDDRGPSLNPVLDYDHGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 DSFDDRGPSLNPVLDYDHGSR 21 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 DSFDDRGPSLNPVLDYDHGS(1)R;DSFDDRGPSLNPVLDYDHGS(1)R ; 83.411 0.00055129 45328000 10397 8097 9093.3 8674 11563.3 11929.3 13667.7 11099.6 7176.6 8096.2 TRUE FALSE FALSE 9178.279421 8346.458973 9584.911304 9027.763212 10710.2984 11701.76848 14194.86777 12363.1336 6880.77751 8048.043442 1.140436118 1.037079264 1.190961676 1.121733907 1.330795301 1.453989229 1.763766295 1.53616636 0.854962769 1 12.97442238 -5.386553687 1.163009302 1.07033888 1.66987662 0.842917673 0.104058166 0.118254355 0.290885708 0.012837488 0.051945889 4.11E-06 5.386553687 0.599537741 ITAHS(ph)SPPLTK ddPTM_HeLa_CUDC101_4h_R1 1 ITAHSSPPLTK 11 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 ITAHS(0.619)S(0.381)PPLTK 69.345 0.039583 6789900 6673.1 5477.4 5545.8 5402.5 6189.8 4666.7 4748.7 4546.7 5858 6127.3 TRUE FALSE FALSE 5890.889334 5646.152202 5845.622723 5622.837302 5733.190786 4577.690473 4931.85895 5064.27795 5616.530761 6090.854547 0.967169596 0.926988513 0.959737698 0.92316066 0.941278558 0.751567853 0.809715437 0.831456064 0.922125248 1 12.57242894 -5.385861073 4.257093898 0.972201904 0.79936036 0.792287553 0.034199849 0.065773589 1.966654923 0.005073318 0.011767941 4.11E-06 5.385861073 -0.172841544 AADPPAENS(ph)SAPEAEQGGAE ddPTM_HeLa_CUDC101_4h_R1 1 AADPPAENSSAPEAEQGGAE 20 0 H0Y449;P67809 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 1 0 AADPPAENS(0.571)S(0.429)APEAEQGGAE 112.82 6.39E-05 0 1149.8 1116.9 1120.8 881.27 1166.3 1291.7 1204.4 959.85 1003.5 1082.1 TRUE FALSE FALSE 1015.022187 1151.310365 1181.393838 917.2119998 1080.264373 1267.062975 1250.854111 1069.115444 962.1353053 1075.663621 0.943624166 1.070325651 1.098293012 0.852694078 1.004277128 1.177936066 1.162867356 0.993912431 0.894457418 1 10.07101128 -5.384891012 6.337184154 0.981697765 1.115878619 0.346876376 0.082784348 0.186850727 8.894745416 0.011031351 0.024865848 4.12E-06 5.384891012 0.134180854 DS(ph)HSPDLQLPTPEVIPSSGSK ddPTM_HeLa_CUDC101_4h_R1 3 DSHSPDLQLPTPEVIPSSGSK 21 0 H3BPE1;H3BQK9;H0Y6T5;H0Y4F5 H3BPE1 MACF1 1 0 DS(0.5)HS(0.5)PDLQLPTPEVIPSSGSK;DS(0.565)HS(0.435)PDLQLPTPEVIPSSGSK;DS(0.822)HS(0.178)PDLQLPTPEVIPSSGSK ;; 146.39 4.55E-07 70246000 13712.9 11145.1 11256.3 10138.1 11194 10411.8 7796.7 4463.4 11103.2 12006 TRUE FALSE FALSE 12105.49465 11488.46732 11864.84963 10551.57554 10368.24092 10213.21226 8097.421331 4971.495414 10645.5214 11934.58778 1.014320299 0.962619534 0.994156635 0.884117301 0.86875568 0.855765817 0.678483537 0.416561972 0.891989032 1 13.54286112 -4.112132134 0.666544493 1.001604741 2.12E-20 0.920175727 0.049189618 0.453801786 0.121718647 0.006156897 0.359679004 7.72E-05 4.112132134 -1.001604741 down RPAEDMEEEQAFK ddPTM_HeLa_CUDC101_4h_R1 1 RPAEDMEEEQAFK 13 1 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 97.273 0.012001 14786000 2315.8 2278.2 2379.7 2157 2027.7 2133.2 2023.3 2274.7 2116.7 2532.4 FALSE FALSE TRUE 2044.345435 2348.388642 2508.35378 2244.971783 1878.120611 2092.512764 2101.339359 2533.642653 2029.44873 2517.337172 0.812106323 0.932886014 0.996431391 0.891804168 0.746074317 0.831240561 0.834746883 1.006477273 0.806188679 1 11.29768275 -5.990833238 24.96845894 0.917977995 0.847467692 0.078153719 0.085323067 356.9665986 972298.755 0.013797877 0.024986018 1.02E-06 5.990833238 -0.070510304 RPAEDMEEEQAFK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 RPAEDMEEEQAFKR 14 2 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 1 ; RPAEDMEEEQAFK(1)R;RPAEDMEEEQAFK(1)R 278.36 1.73E-70 21824400 2658.7 1777.23 1869.64 1697.53 2436.3 2146.6 2367.65 2229.97 2384.5 2215.03 FALSE TRUE FALSE 2347.051216 1831.98435 1970.718394 1766.762611 2256.579003 2105.657181 2458.971054 2483.820771 2286.209901 2201.854903 1.065942725 0.832018653 0.895026457 0.802397382 1.024853636 0.956310599 1.116772522 1.128058333 1.038310879 1 11.10450369 -4.75136331 23.72191221 0.987019383 1.122415627 0.319576919 0.088340005 126.4092299 297590.0816 0.014016061 0.051093076 1.77E-05 4.75136331 0.135396244 RPAEDMEEEQAFKR ddPTM_HeLa_CUDC101_4h_R1 3 RPAEDMEEEQAFKR 14 2 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ;; ;; 112.84 0.0013725 135618000 6366.8 5840.5 5848.5 5356.7 5399.7 5259 4070.2 4321.6 5426.4 6254.3 FALSE FALSE TRUE 5620.493355 6020.438882 6164.687601 5575.16938 5001.374889 5158.693337 4227.188977 4813.553475 5202.721495 6217.099145 0.904037916 0.968367842 0.991569775 0.896747703 0.804454742 0.829758898 0.679929478 0.774244284 0.836840683 1 12.60202587 -5.608849491 1.273629584 0.958040725 0.738020109 0.665419436 0.056532634 0.154141535 0.487083341 0.007624564 0.023165105 2.46E-06 5.608849491 -0.220020615 RPAGGRPSPSAMGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 RPAGGRPSPSAMGKR 15 3 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 0 1 RPAGGRPSPSAMGK(1)R 62.081 0.026526 904220 445.52 323.79 287.85 528.04 433.88 352.86 403.15 385.28 119.26 106.53 FALSE TRUE FALSE 393.296821 333.7655861 303.4120417 549.5757536 401.8735368 346.1297834 418.6996305 429.1387178 114.3440523 105.8963548 3.713978839 3.15181374 2.86517928 5.18975138 3.794970445 3.268571274 3.953862541 4.052440885 1.079773261 1 6.726509119 -9.475170689 0.433296898 2.99E-10 3.912642321 0.780801189 0.579611278 0.865448085 0.189479249 1.553947398 0.17911028 3.35E-10 9.475170689 3.91264232 SISGT(ph)STSEKPNSMDTANTSPFK ddPTM_HeLa_CUDC101_4h_R1 1 SISGTSTSEKPNSMDTANTSPFK 23 1 Q9UJF2-2;Q9UJF2 Q9UJF2-2 RASAL2 Ras GTPase-activating protein nGAP 1 0 S(0.028)IS(0.032)GT(0.24)S(0.24)T(0.24)S(0.209)EKPNS(0.009)MDTANTSPFK 87.156 0.0003864 27309000 940.94 819.29 718.34 742.97 960.1 1169 1021.1 1032.9 793.72 803.61 TRUE FALSE FALSE 830.6444396 844.5313538 757.1756333 773.271528 889.2753358 1146.703273 1060.484169 1150.481161 761.0025256 798.830092 1.039826176 1.057210241 0.947855672 0.968005006 1.113222129 1.435478313 1.327546596 1.440207589 0.952646293 1 9.64174487 -5.383277687 3.675522971 1.01392998 1.394204343 0.934646258 0.047828105 0.038959463 0.942823823 0.006286588 0.014909114 4.14E-06 5.383277687 0.380274363 AAS(ph)PVLLSSNSQK ddPTM_HeLa_CUDC101_4h_R1 2 AASPVLLSSNSQK 13 0 G3V1Z7;P41970 G3V1Z7 ELK3 ETS domain-containing protein Elk-3 1 0 AAS(0.982)PVLLS(0.016)S(0.002)NSQK;AAS(1)PVLLSSNSQK ; 123.28 0.00012725 23338000 4876.07 4105.81 4243.53 3842.75 3806.49 2981.97 3307.83 2603.39 3826.6 4846.42 TRUE FALSE FALSE 4304.504466 4232.30514 4472.948068 3999.473955 3525.692816 2925.093891 3435.414111 2899.749394 3668.865928 4817.593278 0.89349686 0.878510263 0.928461124 0.830180906 0.731836959 0.607169124 0.713097581 0.601908303 0.761555764 1 12.23409688 -5.382531531 0.379460546 0.978395807 0.496963838 0.595139301 0.081018473 0.684272938 0.121784049 0.017759603 0.133759336 4.14E-06 5.382531531 -0.481431969 APETDDS(ph)FSDVDCHSNQEDTGCK ddPTM_HeLa_CUDC101_4h_R1 1 APETDDSFSDVDCHSNQEDTGCK 23 0 Q68D20 Q68D20 PMS2CL Protein PMS2CL 1 0 APET(0.053)DDS(0.678)FS(0.269)DVDCHSNQEDTGCK 76.133 0.00075865 7334300 2605.3 1590.2 1797.3 1903.7 1436.2 1639.1 1622.6 828.93 1651.3 254.97 TRUE FALSE FALSE 2299.910683 1639.192177 1894.467475 1981.341114 1330.254387 1607.836898 1685.184226 923.2920405 1583.232715 253.4534271 9.074293095 6.467429523 7.474617709 7.817377485 5.248516079 6.343717332 6.64889106 3.642846937 6.246641575 1 7.985576861 -5.382079421 14.85524987 5.48317311 5.67884034 0 2.225873399 24.83787704 2933.623574 0.474420107 1.060868456 4.15E-06 5.382079421 0.19566723 GRAEGEWEDQEALDYFS(ph)DKESGK ddPTM_HeLa_CUDC101_4h_R1 6 GRAEGEWEDQEALDYFSDKESGK 23 2 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 GRAEGEWEDQEALDY(0.448)FS(0.536)DKES(0.016)GK;GRAEGEWEDQEALDY(0.418)FS(0.488)DKES(0.094)GK;GRAEGEWEDQEALDY(0.125)FS(0.874)DKES(0.001)GK;GRAEGEWEDQEALDY(0.163)FS(0.61)DKES(0.227)GK;GRAEGEWEDQEALDY(0.144)FS(0.766)DKES(0.09)GK;GRAEGEWEDQEALDY(0.342)FS(0.633)DKES(0.026)GK ;;;;; 99.343 3.71E-05 1575467000 26392.9 25772.3 25089.1 24266.5 28682.2 28226.8 27037.4 25920.5 28911.2 25657.3 TRUE FALSE FALSE 23299.16427 26566.31402 26445.49264 25256.19276 26566.37125 27688.42082 28080.24157 28871.18495 27719.4681 25504.68924 0.913524727 1.04162469 1.036887468 0.990256832 1.041626934 1.085620788 1.100983482 1.131995167 1.086838104 1 14.6384749 -5.381926081 0.601746801 0.96342984 1.149368606 0.277829174 0.051310517 0.617325957 0.311509981 0.008862432 0.062507678 4.15E-06 5.381926081 0.185938766 QELTLS(ph)PGPAK ddPTM_HeLa_CUDC101_4h_R1 1 QELTLSPGPAK 11 0 Q93015-2 Q93015-2 1 0 QELT(0.149)LS(0.851)PGPAK 95.651 0.018026 4766500 1816.5 2046.8 1388.8 1719.5 1439.2 1605.5 1277.3 1155.6 1610.3 1753.5 TRUE FALSE FALSE 1603.572624 2109.859482 1463.882729 1789.628642 1333.033083 1574.877762 1326.565889 1287.148833 1543.922752 1743.070104 0.919970241 1.210427209 0.839830094 1.026710652 0.764761601 0.903507988 0.761051369 0.738437789 0.885749087 1 10.76741488 -5.381671891 0.972313449 0.97773081 0.748276474 0.397802896 0.106994035 0.47995974 0.779674355 0.015940232 0.076112374 4.15E-06 5.381671891 -0.229454336 S(ph)SPVESLKK ddPTM_HeLa_CUDC101_4h_R1 1 SSPVESLKK 9 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(0.976)S(0.024)PVESLKK 115.7 0.015132 140750000 7454.8 5783.1 5784 6333.3 6678.1 5370.3 5109.1 5626 6096.4 6119.5 TRUE FALSE FALSE 6580.959645 5961.270456 6096.700536 6591.599349 6185.469868 5267.870475 5306.159698 6266.441099 5845.103812 6083.100942 1.081842913 0.979972306 1.002235635 1.083591973 1.016828411 0.865984393 0.872278752 1.030139259 0.960875689 1 12.57059123 -5.38080713 6.088126981 1.034957128 0.918379412 0.343326801 0.057276734 0.149334283 6.87335462 0.007787537 0.017584361 4.16E-06 5.38080713 -0.116577716 NVSSFPDDAT(ph)SPLQENR ddPTM_HeLa_CUDC101_4h_R1 1 NVSSFPDDATSPLQENR 17 0 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 NVSSFPDDAT(0.968)S(0.032)PLQENR 223.93 4.02E-32 479450000 4016.4 3354.6 2861.8 3236 3154.9 2969.4 2666.3 972.17 3608.2 3842.9 TRUE FALSE FALSE 3545.60368 3457.95125 3016.517564 3367.978067 2922.169312 2912.763642 2769.140084 1082.837903 3459.468469 3820.04226 0.928158235 0.905212826 0.789655548 0.881659897 0.764957326 0.762495136 0.724897762 0.283462284 0.905609999 1 11.89937288 -4.111432231 0.488226738 0.962804451 7.84E-33 0.80745597 0.083281441 1.428304749 0.205925978 0.016995585 0.812859071 7.74E-05 4.111432231 -0.962804451 down AKAGLESGAEPGDGDS(ph)DTTK ddPTM_HeLa_CUDC101_4h_R1 2 AKAGLESGAEPGDGDSDTTK 20 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 AKAGLES(0.004)GAEPGDGDS(0.602)DT(0.304)T(0.091)K;AKAGLESGAEPGDGDS(0.977)DT(0.012)T(0.012)K ; 173.74 3.08E-08 89819000 7619 9250.5 10011.9 9009.3 12119.6 10175.5 11100.4 12974.2 9847.5 5371.6 TRUE FALSE FALSE 6725.91237 9535.49694 10553.1736 9376.738196 11225.56125 9981.419291 11528.54615 14451.13048 9441.581882 5339.649484 1.259616832 1.785790803 1.976379466 1.756058749 2.102303023 1.869302343 2.159045492 2.706381857 1.768202559 1 12.38252933 -5.380536064 0.215832629 0.79264479 3.274963516 0.507525347 0.313699649 1.890724661 0.125978141 0.263657224 1.314798937 4.16E-06 5.380536064 2.482318726 S(ph)LPAGDALYLSFNPPQPSR ddPTM_HeLa_CUDC101_4h_R1 1 SLPAGDALYLSFNPPQPSR 19 0 Q92974-2;Q92974;V9GYM8;A0A5F9ZI21;Q92974-3;V9GYF0 Q92974-2 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 S(0.999)LPAGDALY(0.001)LSFNPPQPSR 97.713 0.0018932 28468000 254.95 218.37 223.21 248.42 214.89 118.29 0 202.02 222.26 274.7 TRUE FALSE FALSE 225.0651475 225.0977209 235.2774078 258.5516414 199.0379928 116.0338153 0 225.0171402 213.0983487 273.0660722 0.824214981 0.824334269 0.861613477 0.946846451 0.728900486 0.424929448 0 0.824039173 0.78039116 1 8.093106264 -5.380066265 2.913040572 0.903552042 0.369373745 0.511421674 0.196668483 0.129888461 2.105902293 0.026209283 0.065431105 4.17E-06 5.380066265 -0.534178297 RPDDVPLSLSPSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 RPDDVPLSLSPSKR 14 2 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 0 1 ; RPDDVPLSLSPSK(1)R;RPDDVPLSLSPSK(1)R 102.15 0.018772 2651500 635.04 836.71 843.5 611.02 940.57 704.88 1165.8 954.87 504.19 615.7 FALSE TRUE FALSE 560.6015739 862.4880434 889.1021614 635.9400367 871.186025 691.4355884 1210.765297 1063.568541 483.4070748 612.037789 0.915959086 1.409207175 1.452691611 1.039053549 1.423418685 1.129726956 1.978252517 1.737749793 0.789832072 1 9.257476922 -1 0.250657539 0.925343218 7.160221477 0.596749252 0.228556921 22.0239261 0.275001323 0.121020379 58.64066579 0.1 1 6.234878259 RSSQPSPTAVPAS(ph)DSPPTK ddPTM_HeLa_CUDC101_4h_R1 1 RSSQPSPTAVPASDSPPTK 19 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 RS(0.004)S(0.004)QPSPT(0.059)AVPAS(0.904)DS(0.028)PPT(0.001)K 94.301 0.0013344 23067000 931.68 716.97 946.23 860.4 826.41 663.85 672.48 649.8 872.74 682.11 TRUE FALSE FALSE 822.4698827 739.0589959 997.386056 895.490831 765.4473807 651.1881673 698.4177789 723.7706054 836.7652878 678.0527794 1.212987997 1.089972666 1.470956371 1.320680127 1.128890558 0.960379763 1.030034534 1.067425173 1.234071024 1 9.405253766 -5.379799506 6.569911349 1.14954392 1.021093912 0.225565432 0.132550781 0.404383826 20.28427451 0.022520109 0.050710748 4.17E-06 5.379799506 -0.128450008 AGAASPLNSPLSSAVPSLGKEPFPPS(ph)SPLQK ddPTM_HeLa_CUDC101_4h_R1 1 AGAASPLNSPLSSAVPSLGKEPFPPSSPLQK 31 1 E7EPJ7;O75962-5;O75962-4;O75962 E7EPJ7 TRIO Triple functional domain protein 1 0 AGAASPLNSPLSSAVPS(0.002)LGKEPFPPS(0.499)S(0.499)PLQK 87.485 1.36E-07 28832000 1650.1 1419.2 1784.1 1674.1 2263 2346.8 2121 2434.5 1768.6 1642.9 TRUE FALSE FALSE 1456.677779 1462.92387 1880.553843 1742.377034 2096.062999 2302.0387 2202.80768 2711.633639 1695.697559 1633.127958 0.891955693 0.895780311 1.151504286 1.066895601 1.28346526 1.409588691 1.348827365 1.660392639 1.038312737 1 10.67342212 -5.378493645 0.707511607 0.943201398 1.612524024 0.863552621 0.086805529 0.245869227 0.184107697 0.015494898 0.098277042 4.18E-06 5.378493645 0.669322625 MRFT(ph)CEMFHPNSGQPDVQGK ddPTM_HeLa_CUDC101_4h_R1 1 MRFTCEMFHPNSGQPDVQGK 20 1 F8WDB1 F8WDB1 UBE2G2 1 0 MRFT(0.991)CEMFHPNS(0.009)GQPDVQGK 45.257 0.036802 43954000 5865.2 5332.6 5075.9 4624.2 5790.3 5746.1 5228.1 5032.6 5286.9 5549.5 TRUE FALSE FALSE 5177.690147 5496.891085 5350.318508 4812.794863 5363.161105 5636.502716 5429.749568 5605.490842 5068.971744 5516.491327 0.938583937 0.996446973 0.969877081 0.872437674 0.972205119 1.021755022 0.984275919 1.016133355 0.918876047 1 12.42953524 -5.378459192 6.557914613 0.964554681 1.004804376 0.269801246 0.037951675 0.32232258 16.21530428 0.005631876 0.012683191 4.18E-06 5.378459192 0.040249695 RPDQQLQGEGK ddPTM_HeLa_CUDC101_4h_R1 2 RPDQQLQGEGK 11 1 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 0 ; ; 132.14 0.0019186 17330700 7994.3 6560.2 6493.7 6658 8213.9 7312.4 7532.9 6511.1 6651.1 7254.5 FALSE FALSE TRUE 7057.220273 6762.311986 6844.769064 6929.542018 7607.976961 7172.928153 7823.446476 7252.297305 6376.938843 7211.349911 0.978626798 0.93773178 0.949166127 0.960921617 1.055000389 0.994672044 1.08487961 1.005678187 0.884291973 1 12.81605363 -5.761484935 24.99999964 0.980117475 1.035731598 0.395409665 0.042519396 0.908969419 499111.7776 0.004573934 0.00869293 1.73E-06 5.761484935 0.055614123 SEEIS(ph)ESESEETNAPKK ddPTM_HeLa_CUDC101_4h_R1 1 SEEISESESEETNAPKK 17 1 P54259 P54259 ATN1 Atrophin-1 1 0 S(0.026)EEIS(0.943)ES(0.026)ES(0.005)EETNAPKK 64.5 0.020365 10839000 2114.1 2010.8 2092.9 1758.6 1968.9 1619.4 1520.1 1368.3 1891.6 1939.6 TRUE FALSE FALSE 1866.288403 2072.750365 2206.048505 1830.323309 1823.65817 1588.512643 1578.730766 1524.061741 1813.627447 1928.063173 0.967960194 1.075042765 1.144178539 0.949306711 0.945849802 0.82389035 0.818816929 0.790462555 0.940647315 1 10.91293661 -5.377409649 1.89636428 1.003412331 0.80253284 0.713439051 0.057316431 0.15605666 1.081107004 0.008929812 0.02612554 4.19E-06 5.377409649 -0.200879491 TSDDEVGS(ph)PKEESR ddPTM_HeLa_CUDC101_4h_R1 2 TSDDEVGSPKEESR 14 1 B8ZZI9;Q6ULP2-7;Q6ULP2-8;Q6ULP2-6;Q6ULP2;Q6ULP2-9 B8ZZI9 AFTPH Aftiphilin 1 0 TSDDEVGS(0.992)PKEES(0.008)R;T(0.04)S(0.008)DDEVGS(0.951)PKEESR ; 76.051 0.019135 64014000 6000.3 5737.4 5934.3 5889.1 7149.4 6451.4 6495.4 6362.7 5979.8 6432.8 TRUE FALSE FALSE 5296.95393 5914.162494 6255.126208 6129.282953 6622.003006 6328.350294 6745.929754 7087.004049 5733.310113 6394.53742 0.828356077 0.924877298 0.97819839 0.958518584 1.035571859 0.989649427 1.054951955 1.10829034 0.896594974 1 12.64262428 -5.376436439 0.771543769 0.919848595 1.093791073 0.626680634 0.046951811 0.663621653 0.614471466 0.012181021 0.072143406 4.20E-06 5.376436439 0.173942478 SSPQLDPLRKS(ph)PT(ph)MEQAVQTASAHLPAPAAVGR ddPTM_HeLa_CUDC101_4h_R1 1 SSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGR 33 2 Q8ND56-3;Q8ND56-2;Q8ND56 Q8ND56-3 LSM14A Protein LSM14 homolog A 2 0 S(0.134)S(0.422)PQLDPLRKS(0.778)PT(0.652)MEQAVQT(0.013)AS(0.003)AHLPAPAAVGR 62.858 0.00089713 33602000 722.46 468.71 469.41 606.55 814.69 775.83 760.98 727.83 850.49 871.18 TRUE FALSE FALSE 637.774334 483.1503995 494.7877245 631.2877307 754.5919418 761.0323354 790.3312535 810.6832252 815.4324422 865.9981826 0.736461515 0.557911563 0.571349611 0.728971196 0.87135511 0.87879207 0.91262461 0.936125781 0.941609877 1 9.758220187 -5.376178072 2.880601291 0.811751459 0.912306708 0.140948924 0.137695655 0.687130873 10.91672745 0.025921671 0.065048251 4.21E-06 5.376178072 0.10055525 LEPVSPPS(ph)PPHTDPELELVPPR ddPTM_HeLa_CUDC101_4h_R1 1 LEPVSPPSPPHTDPELELVPPR 22 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;C9JQE8;C9J330;H7C1Y3;H0YGK8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 LEPVS(0.002)PPS(0.964)PPHT(0.034)DPELELVPPR 95.223 0.00016964 23619000 1592.7 1722 1429.4 1443.7 1548.3 1186.8 981.11 1111.6 1446.7 1682 TRUE FALSE FALSE 1406.00612 1775.052779 1506.677688 1502.580326 1434.084994 1164.163767 1018.951741 1238.140051 1387.066414 1671.995389 0.84091507 1.061637365 0.901125504 0.898674922 0.857708701 0.696272116 0.609422579 0.740516427 0.829587463 1 10.70735515 -5.375239384 2.129976082 0.93143105 0.666436121 0.693145643 0.071352913 0.135740857 1.19011851 0.011138201 0.030956725 4.21E-06 5.375239384 -0.264994929 RGPEVTSQGVQTSS(ph)PACK ddPTM_HeLa_CUDC101_4h_R1 3 RGPEVTSQGVQTSSPACK 18 1 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHH4;A0A5F9ZHX3;F8W0B5;F8WB05;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 1 0 RGPEVTSQGVQTS(0.343)S(0.657)PACK;RGPEVTSQGVQT(0.001)S(0.091)S(0.907)PACK;RGPEVTSQGVQT(0.003)S(0.249)S(0.748)PACK ;; 183.6 8.65E-11 166471000 12922.5 10837.7 10291.8 10206.2 10440.3 9459.3 8707.9 7399.09 10937.9 10461.3 TRUE FALSE FALSE 11407.74414 11171.59669 10848.20584 10622.45295 9670.139869 9278.879613 9043.76662 8241.372497 10487.03513 10399.07572 1.096995968 1.074287465 1.043189427 1.021480489 0.929903784 0.892279262 0.869670234 0.792510096 1.008458387 1 13.34416769 -5.374994401 1.086222065 1.05034673 0.818826796 0.883878893 0.031697413 0.171154202 0.359207446 0.006563731 0.028560366 4.22E-06 5.374994401 -0.231519934 ES(ph)PEGSYTDDANQEVR ddPTM_HeLa_CUDC101_4h_R1 2 ESPEGSYTDDANQEVR 16 0 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 0 ES(1)PEGSYTDDANQEVR;ES(0.772)PEGS(0.228)YTDDANQEVR ; 346.42 1.52E-217 42345000 2201.63 1670.02 1753.24 1866.94 1788.87 1575.2 1489.89 1232.64 2022.15 1726.04 TRUE FALSE FALSE 1943.558269 1721.471337 1848.025458 1943.081883 1656.908624 1545.155684 1547.355556 1372.958755 1938.796121 1715.773437 1.132759271 1.003320893 1.077080119 1.132481621 0.965691966 0.900559276 0.901841422 0.800198164 1.129983761 1 10.74464335 -5.372943392 2.181314906 1.064619 0.860859053 0.752805072 0.054111919 0.140229764 1.289760176 0.008988643 0.024780865 4.24E-06 5.372943392 -0.203759947 REQGGSGLGSGSS(ph)GGGGSTSGLGSGYIGR ddPTM_HeLa_CUDC101_4h_R1 1 REQGGSGLGSGSSGGGGSTSGLGSGYIGR 29 1 Q2M2I8-2;Q2M2I8;E9PG46 Q2M2I8-2 AAK1 AP2-associated protein kinase 1 1 0 REQGGSGLGS(0.005)GS(0.427)S(0.563)GGGGS(0.004)T(0.001)SGLGSGYIGR 73.892 2.99E-05 0 532.81 73.465 1873.2 258.68 447.7 152.82 217.55 144.15 335.86 234.72 TRUE FALSE FALSE 470.3548195 75.72836957 1974.470858 269.2300885 414.6740629 149.9052131 225.9409764 160.5594533 322.0157086 233.323875 2.015888085 0.324563312 8.462360991 1.15389001 1.777246597 0.642476957 0.968357723 0.688139837 1.380123267 1 7.866190129 -5.371788569 2.999678036 1.945484329 0.778522843 0.079500563 2.168718203 0.704814549 12.09340607 0.315620865 0.785697734 4.25E-06 5.371788569 -1.166961486 RPEGPGAQAPSSPR ddPTM_HeLa_CUDC101_4h_R1 1 RPEGPGAQAPSSPR 14 1 P40222 P40222 TXLNA Alpha-taxilin 0 0 146.84 7.22E-06 0 237.58 59.859 349.61 329.19 226.23 260.57 202.72 178.4 209.31 167.35 FALSE FALSE TRUE 209.7312325 61.70318484 368.5109741 342.6157911 209.5414636 255.6000614 210.5389783 198.7083349 200.6821532 166.3545948 1.26074806 0.370913619 2.21521368 2.059551115 1.25960731 1.536477317 1.265603626 1.194486604 1.20635173 1 7.378117904 -6.757180078 24.99999998 1.070155168 1.577911624 0.36965397 0.391720963 110.0252885 645790.885 0.063409044 0.087863105 1.75E-07 6.757180078 0.507756455 RPELEDSTLR ddPTM_HeLa_CUDC101_4h_R1 2 RPELEDSTLR 10 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;E9PMV1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 155.53 0.00012296 44076000 4591.3 3609.1 3401.1 3583.4 4002.3 3505.1 3528.6 3507.8 3514.6 3980.4 FALSE FALSE TRUE 4053.114774 3720.292093 3584.973754 3729.546541 3707.058303 3438.246057 3664.699284 3907.113773 3369.7267 3956.724404 1.024361153 0.940245444 0.906045857 0.94258436 0.936900811 0.868962734 0.926195234 0.987461692 0.851645542 1 11.95009087 -7.186693672 4.926438999 1.011485567 0.926296211 0 0.05808475 0.098612613 4.458249158 0.00483116 0.005918289 6.51E-08 7.186693672 -0.085189356 RVS(ph)EVEEEKEPVPQPLPSDDTR ddPTM_HeLa_CUDC101_4h_R1 2 RVSEVEEEKEPVPQPLPSDDTR 22 2 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 1 0 RVS(0.995)EVEEEKEPVPQPLPS(0.005)DDTR;RVS(1)EVEEEKEPVPQPLPSDDTR ; 81.94 0.00048991 188200000 4902.3 3807.9 4338.3 4059.6 5651.9 5471 6224.3 4898.7 4305.5 4782.5 TRUE FALSE FALSE 4327.659825 3925.216886 4572.841621 4225.168035 5234.970597 5366.64979 6464.373336 5456.348207 4128.025468 4754.053477 0.910309454 0.825656864 0.961882663 0.888750633 1.101159384 1.128857682 1.359760332 1.147725458 0.868317003 1 12.21494242 -5.370997921 1.898946606 0.942012467 1.245565258 0.751700651 0.077835595 0.129442392 0.898488952 0.01118022 0.032856483 4.26E-06 5.370997921 0.303552791 AHFNAMFQPSS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 2 AHFNAMFQPSSPTR 14 0 Q8WUA4;H0Y4Q6 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 AHFNAMFQPS(0.229)S(0.769)PT(0.002)R;AHFNAMFQPS(0.041)S(0.917)PT(0.041)R ; 133.04 0.00074085 80473000 3246.9 2917.4 2517.49 2808.5 2972.1 2531.2 2358.3 2270.4 2629.7 2876.7 TRUE FALSE FALSE 2866.303304 3007.281636 2653.593124 2923.042769 2752.854104 2482.921577 2449.260421 2528.853159 2521.302653 2859.58926 1.002347905 1.051648108 0.927963033 1.022189728 0.962674655 0.868279096 0.85650777 0.884341396 0.88170098 1 11.48159222 -5.367833464 3.165361942 1.00048591 0.867048097 0.495825119 0.047972381 0.074811975 1.41937199 0.003945526 0.009714279 4.29E-06 5.367833464 -0.133437813 LPS(ph)IVVEPTEGEVESGELR ddPTM_HeLa_CUDC101_4h_R1 2 LPSIVVEPTEGEVESGELR 19 0 B5MBX5;B5MCP4;Q53QV2 B5MBX5 LBH Protein LBH 1 0 LPS(1)IVVEPTEGEVESGELR;LPS(1)IVVEPTEGEVESGELR ; 172.6 1.47E-07 9441900 853.61 284.63 353.67 619.46 618.83 724.56 685.15 605.51 451.84 456.37 TRUE FALSE FALSE 753.5511298 293.3991129 372.79047 644.7242563 573.1801438 710.7402252 711.576465 674.4388108 433.214964 453.6554909 1.661064717 0.646744322 0.821747951 1.421175913 1.26347009 1.566695961 1.568539297 1.486676177 0.954942622 1 8.825453311 -5.367046231 2.419284626 1.23051438 1.548229119 0.247529748 0.294412893 0.483053381 5.46729779 0.051652214 0.137535325 4.29E-06 5.367046231 0.317714739 T(ph)PTSSPASSPLVAK ddPTM_HeLa_CUDC101_4h_R1 2 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 T(0.695)PT(0.139)S(0.083)S(0.083)PASSPLVAK;T(0.318)PT(0.064)S(0.306)S(0.306)PAS(0.006)S(0.002)PLVAK ; 197.36 8.70E-16 111365000 7678 6055.9 5914.8 6123.8 5737.8 5610.7 4588.3 4242.9 5690.1 6143 TRUE FALSE FALSE 6777.996479 6242.475101 6234.571979 6373.555033 5314.533925 5503.685246 4765.272268 4725.894586 5455.55167 6106.461163 1.109971274 1.022273774 1.020979552 1.043739551 0.870313228 0.901288831 0.780365606 0.773917079 0.89340643 1 12.57612083 -5.364972066 0.983834383 1.051548994 0.763679804 0.652368916 0.064086509 0.192746482 0.319971045 0.008044912 0.03876363 4.32E-06 5.364972066 -0.28786919 LPS(ph)DTDDSDASEDPGPGAER ddPTM_HeLa_CUDC101_4h_R1 1 LPSDTDDSDASEDPGPGAER 20 0 Q9UJK0 Q9UJK0 TSR3 Ribosome biogenesis protein TSR3 homolog 1 0 LPS(0.768)DT(0.231)DDS(0.001)DASEDPGPGAER 195.77 3.23E-17 12111000 247.14 272.27 180.79 270.01 250.12 37.804 141.71 183.91 236.81 312.32 TRUE FALSE FALSE 218.1706238 280.658316 190.5640543 281.0221749 231.6691459 37.08295169 147.1758022 204.845571 227.0485916 310.4623067 0.702728219 0.904001258 0.613807377 0.905173249 0.746206998 0.119444296 0.47405369 0.659808185 0.731324179 1 8.278274311 -5.364861708 0.129663912 1.17194463 1.28E-12 0.274061228 0.203759332 15.00298722 0.510756852 1.220743899 3.687295856 4.32E-06 5.364861708 -1.17194463 QLS(ph)ENRK ddPTM_HeLa_CUDC101_4h_R1 1 QLSENRK 7 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154;Q15154-4;Q15154-2;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 QLS(1)ENRK 74.415 0.029203 9277700 4142.9 3594.9 3953.6 4292 4106.9 3546.7 3568.8 3053 3753.6 3992.1 TRUE FALSE FALSE 3657.275542 3705.654608 4167.343575 4467.046312 3803.942169 3479.052607 3706.449811 3400.541179 3598.875019 3968.354812 0.921610016 0.933801231 1.050143894 1.125667064 0.958569067 0.876698978 0.934001617 0.856914601 0.906893458 1 11.95432531 -5.362886446 5.453307514 0.97938169 0.894135599 0.320781205 0.063980665 0.24820345 10.84512067 0.009810905 0.022319189 4.34E-06 5.362886446 -0.08524609 RDS(ph)SESQLASTESDKPTTGR ddPTM_HeLa_CUDC101_4h_R1 2 RDSSESQLASTESDKPTTGR 20 2 A0A087WVF1;Q96B23-2;Q96B23;K7EQH1 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 RDS(0.944)S(0.056)ES(0.001)QLASTESDKPTTGR;RDS(0.485)S(0.485)ES(0.031)QLASTESDKPTTGR ; 151.85 1.30E-05 144198000 3163.61 3180.85 2530.21 3053.2 3863.24 4021.97 3789.58 3951.67 2851.25 3492.75 TRUE FALSE FALSE 2792.776432 3278.848218 2667.000806 3177.722693 3578.256482 3945.257623 3935.74537 4401.51214 2733.720268 3471.974968 0.804376891 0.944375535 0.768150932 0.91524931 1.030611256 1.136315112 1.133575388 1.26772577 0.787367505 1 11.76154083 -5.361967051 1.58264224 0.896883187 1.20120327 0.76422948 0.077087464 0.179246504 0.853203524 0.013327922 0.04379453 4.35E-06 5.361967051 0.304320084 GSSAAASPGS(ph)PPPGR ddPTM_HeLa_CUDC101_4h_R1 4 GSSAAASPGSPPPGR 15 0 Q86UX6 Q86UX6 STK32C Serine/threonine-protein kinase 32C 1 0 GSSAAASPGS(1)PPPGR;GSSAAASPGS(1)PPPGR;GSSAAASPGS(1)PPPGR;GSSAAAS(0.008)PGS(0.992)PPPGR ;;; 194.67 3.66E-16 67005800 5864.08 4809.17 5206.52 5158.19 5532.2 4484.86 4555.66 3860.21 5464.77 5445.85 TRUE FALSE FALSE 5176.701432 4957.334827 5488.00022 5368.563284 5124.100628 4399.318768 4731.373332 4299.640703 5239.509868 5413.457842 0.956265216 0.91574276 1.013769827 0.991706861 0.946548542 0.812663347 0.874002065 0.794250335 0.967867493 1 12.40233469 -5.360775782 4.032364843 0.976956812 0.831517933 0.810695671 0.031849086 0.073535073 2.119607039 0.004742511 0.011164646 4.36E-06 5.360775782 -0.145438879 RPFDPNDR ddPTM_HeLa_CUDC101_4h_R1 3 RPFDPNDR 8 1 A0A0B4J1Z1;C9JAB2;Q16629-3;Q16629-2;Q16629-4;Q16629;F8WEA1 A0A0B4J1Z1 SRSF7 Serine/arginine-rich splicing factor 7 0 0 ;; ;; 126.24 0.0065686 68332100 2904.11 2927.7 3493.4 3266 3355.8 2637.08 3079.03 2645.77 3231.6 3769.74 FALSE FALSE TRUE 2563.694628 3017.898967 3682.263771 3399.201597 3108.24932 2586.782093 3197.789219 2946.953762 3098.39208 3747.317419 0.684141305 0.805349168 0.982639942 0.90710266 0.829459843 0.690302369 0.853354243 0.786416904 0.826829365 1 11.87164247 -9.599482812 1.410151355 0.999538197 0.803490671 0.013586403 0.100093291 0.374229798 1.340359071 0.068590145 0.016026492 2.51E-10 9.599482812 -0.196047526 (ac)SETAPAAPAAPAPAEKT(ph)PVKK ddPTM_HeLa_CUDC101_4h_R1 3 SETAPAAPAAPAPAEKTPVKK 21 2 P10412 P10412 HIST1H1E Histone H1.4 1 0 SETAPAAPAAPAPAEKT(1)PVKK;S(0.001)ET(0.001)APAAPAAPAPAEKT(0.999)PVKK;S(0.001)ET(0.001)APAAPAAPAPAEKT(0.998)PVKK ;; 63.115 0.00060073 527000000 8764 7171.9 10438.9 9486.6 7366.8 6090.1 4765 4059.5 6685.1 9414.6 TRUE FALSE FALSE 7736.697205 7392.857738 11003.25851 9873.504553 6823.365841 5973.941489 4948.787646 4521.617071 6409.537348 9358.60154 0.826693729 0.789953254 1.175737471 1.055019226 0.729101011 0.638336985 0.528795635 0.483150934 0.684881958 1 13.19207725 -5.359641867 2.178471132 0.934479616 0.526194084 0.595848832 0.137029525 0.145591411 1.334388909 0.018613903 0.051853888 4.37E-06 5.359641867 -0.408285532 RPGEK(ac)TYTQR ddPTM_HeLa_CUDC101_4h_R1 2 RPGEKTYTQR 10 2 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 1 ; RPGEK(1)TYTQR;RPGEK(1)TYTQR 189.17 3.93E-05 3018200 1373.95 1012.43 1126.03 1224.94 1110.79 690.61 751.25 470.54 1397.52 659.76 FALSE TRUE FALSE 1212.897664 1043.621768 1186.906588 1274.898348 1028.849235 677.4377649 780.2259642 524.1043716 1339.913634 655.8357182 1.849392508 1.591285347 1.809762041 1.943929421 1.5687606 1.032938198 1.189666776 0.799139719 2.043062915 1 9.357190666 -5.255928591 22.72965598 1.507216434 1.025489924 0.418375432 0.321377619 145.8138445 601407.8793 0.055073397 0.13574483 5.55E-06 5.255928591 -0.481726511 SLEEDLETLKS(ph)LEK ddPTM_HeLa_CUDC101_4h_R1 1 SLEEDLETLKSLEK 14 1 P48681 P48681 NES Nestin 1 0 SLEEDLETLKS(1)LEK 94.639 0.0059564 9405900 1526.3 1551.8 1789.3 1578.6 2129.5 2445.3 2654.5 2227.2 1735.8 1831.2 TRUE FALSE FALSE 1347.389428 1599.609119 1886.03497 1642.982131 1972.411028 2398.659977 2756.884954 2480.735445 1664.249589 1820.307941 0.740198621 0.878757425 1.036107643 0.902584719 1.083558986 1.317722086 1.514515699 1.362810868 0.914268159 1 10.82996682 -5.359480934 1.557165847 0.885351168 1.451988763 0.868783843 0.084820794 0.12490462 0.574427767 0.017025494 0.056669693 4.37E-06 5.359480934 0.566637595 DMSPLSETEMALGKDVT(ph)PPPETEVVLIK ddPTM_HeLa_CUDC101_4h_R1 6 DMSPLSETEMALGKDVTPPPETEVVLIK 28 1 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMS(0.006)PLS(0.021)ET(0.036)EMALGKDVT(0.935)PPPET(0.003)EVVLIK;DMS(0.013)PLS(0.043)ET(0.157)EMALGKDVT(0.781)PPPET(0.006)EVVLIK;DMSPLS(0.002)ET(0.005)EMALGKDVT(0.992)PPPET(0.001)EVVLIK;DMSPLSETEMALGKDVT(0.997)PPPET(0.003)EVVLIK;DMSPLSETEMALGKDVT(1)PPPETEVVLIK;DMS(0.147)PLS(0.224)ET(0.224)EMALGKDVT(0.398)PPPET(0.006)EVVLIK ;;;;; 123.29 1.93E-13 397729000 13597.18 12514.37 12663.17 11181.53 14271.4 14161.88 13029.89 12966.09 13884.9 13863.64 TRUE FALSE FALSE 12003.33917 12899.92291 13347.77927 11637.56112 13218.62725 13891.76573 13532.45722 14442.09727 13312.55855 13781.17845 0.870995119 0.936053687 0.96855137 0.844453264 0.959179746 1.008024516 0.981952107 1.047958077 0.965995658 1 13.75041164 -5.359252271 4.10661645 0.932996852 1.009774654 0.384475422 0.045782335 0.238667538 7.10589757 0.008187335 0.019229173 4.37E-06 5.359252271 0.076777802 RPGHDDGQRPSGGAAAAPR ddPTM_HeLa_CUDC101_4h_R1 1 RPGHDDGQRPSGGAAAAPR 19 2 Q8N726-2;Q8N726 Q8N726-2 CDKN2A Tumor suppressor ARF 0 0 65.225 0.010431 1275400 119.22 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 105.2452123 0 0 0 0 0 0 0 0 0 0 LPPQSSGVDTSPCPNS(ph)PVFR ddPTM_HeLa_CUDC101_4h_R1 2 LPPQSSGVDTSPCPNSPVFR 20 0 O75815;O75815-3;O75815-2 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 0 LPPQSSGVDT(0.004)S(0.013)PCPNS(0.983)PVFR;LPPQSSGVDT(0.312)S(0.312)PCPNS(0.376)PVFR ; 135.38 7.18E-07 8934000 160.17 266.28 182.37 203.93 286.81 327.41 414.22 280.15 379.7 248.13 TRUE FALSE FALSE 141.3951154 274.4837712 192.2294738 212.2471469 265.6525977 321.1651998 430.1966042 312.0411436 364.0486053 246.6541117 0.573252618 1.112828687 0.779348345 0.860505205 1.07702481 1.302087354 1.744129061 1.265096055 1.475947848 1 7.946345527 -5.35802088 1.792638142 0.820601562 1.508542149 0.30698115 0.272189241 0.16374831 1.008387012 0.030513425 0.09341387 4.39E-06 5.35802088 0.687940587 ELEDS(ph)PQENVSVTEIIKPCDDPKSEAK ddPTM_HeLa_CUDC101_4h_R1 1 ELEDSPQENVSVTEIIKPCDDPKSEAK 27 2 Q5F1R6;Q5F1R6-3;Q5F1R6-2;A0A2R8Y534;A0A2R8Y4Q0 Q5F1R6 DNAJC21 DnaJ homolog subfamily C member 21 1 0 ELEDS(0.978)PQENVS(0.021)VT(0.001)EIIKPCDDPKSEAK 89.024 2.98E-06 18132000 2249.5 2150.8 1992.2 2061.8 2377.1 2411.3 2320.2 1999.3 2404 2360.9 TRUE FALSE FALSE 1985.81702 2217.063599 2099.904358 2145.889116 2201.746069 2365.30847 2409.690891 2226.892231 2304.906102 2346.857262 0.846160119 0.944694692 0.894772934 0.91436712 0.938167866 1.007862092 1.02677352 0.94888269 0.982124537 1 11.19651438 -5.353937826 4.436787291 0.92372026 0.997619484 0.286932335 0.044718768 0.250860982 8.569447536 0.008521765 0.019826037 4.43E-06 5.353937826 0.073899224 SSSQIPEGFGLT(ph)SGGSNYSLAR ddPTM_HeLa_CUDC101_4h_R1 1 SSSQIPEGFGLTSGGSNYSLAR 22 0 A2RRE0;Q9Y4E6-2;Q9Y4E6 A2RRE0 WDR7 WD repeat-containing protein 7 1 0 S(0.003)S(0.003)S(0.038)QIPEGFGLT(0.714)S(0.23)GGS(0.005)NY(0.003)S(0.005)LAR 81.789 0.0042824 21300000 798.32 592.26 502.39 663.76 881.03 890.38 1064.1 903.76 686.76 521.25 TRUE FALSE FALSE 704.7421398 610.5068286 529.550723 690.8310018 816.0381722 873.397485 1105.142693 1006.640385 658.4514621 518.1495818 1.360113304 1.178244372 1.022003571 1.333265578 1.574908484 1.685608781 2.1328642 1.9427602 1.27077486 1 9.017224832 -5.352977579 1.167916026 1.1631672 2.060068857 0.874028906 0.127653808 0.155958329 0.383540334 0.024891893 0.104145508 4.44E-06 5.352977579 0.896901658 FFTSS(ph)TSLTLK ddPTM_HeLa_CUDC101_4h_R1 1 FFTSSTSLTLK 11 0 Q99567;J3KMX1;I3L245 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 FFTS(0.013)S(0.633)T(0.278)S(0.071)LT(0.005)LK 142.89 0.001258 10524000 2012.2 1839.7 1596.7 1771.4 1993.8 2191.8 2021.2 1538.8 1882.6 2004.3 TRUE FALSE FALSE 1776.332966 1896.378976 1683.022432 1843.645349 1846.721346 2149.995067 2099.158361 1713.970772 1804.998431 1992.378334 0.891564085 0.951816702 0.844730342 0.925349025 0.926892907 1.079109841 1.053594252 0.860263707 0.905951646 1 10.96027591 -5.351812233 24.99999883 0.936854069 1.003268782 0.19025508 0.066836251 88.68502878 24529.44267 0.010170323 0.022741534 4.45E-06 5.351812233 0.066414712 AVPS(ph)PPPPPIVK ddPTM_HeLa_CUDC101_4h_R1 1 AVPSPPPPPIVK 12 0 A0A286YF23;A0A0J9YY01;A0A2R8YFM0;Q96JP2 A0A286YF23 MYO15B Unconventional myosin-XVB 1 0 AVPS(1)PPPPPIVK 83.314 0.030228 33791000 7932.1 6892.5 6491.1 7460.3 7538.9 5989.8 6394 5360 6475.5 7156.6 TRUE FALSE FALSE 7002.311262 7104.849755 6842.028501 7764.56328 6982.770367 5875.554545 6640.618722 5970.160734 6208.577149 7114.032225 0.984295691 0.998709245 0.961765182 1.091443366 0.981548881 0.825910589 0.933453562 0.839209122 0.872722663 1 12.79645179 -5.351321111 6.34202927 0.997904644 0.873362081 0.45878733 0.057502588 0.099071134 5.784270771 0.005501728 0.012424523 4.45E-06 5.351321111 -0.124542562 KT(ph)EEERPQET(ph)TNQHSTKSGTEPK ddPTM_HeLa_CUDC101_4h_R1 1 KTEEERPQETTNQHSTKSGTEPK 23 3 O94913;E9PKN0;E9PQ01 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 2 0 KT(0.659)EEERPQET(0.61)T(0.61)NQHS(0.097)T(0.017)KS(0.004)GT(0.004)EPK 47.047 0.0028489 0 216.47 316.55 301.84 195.35 308.42 381.91 335.02 343.57 355.41 311.76 TRUE FALSE FALSE 191.0957147 326.3025303 318.1583834 203.3172174 285.6684711 374.6257031 347.9418336 382.68062 340.7598494 309.9056377 0.616625487 1.052909307 1.026629867 0.656061693 0.921791785 1.208837974 1.122734766 1.234829489 1.099560021 1 8.27568519 -5.351156224 4.257987325 0.839854757 1.182587533 0.332974558 0.162989356 0.16284908 5.269704862 0.025401236 0.059497615 4.45E-06 5.351156224 0.342732777 TQAS(ph)SSPAALKPPAGR ddPTM_HeLa_CUDC101_4h_R1 1 TQASSSPAALKPPAGR 16 1 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 TQAS(0.388)S(0.388)S(0.224)PAALKPPAGR 101.28 0.0022051 19588000 2231.8 1757.3 1865.2 1882.9 1938 1367.6 1495.2 1092.3 1918.8 1841.1 TRUE FALSE FALSE 1970.191787 1811.44033 1966.038354 1959.692801 1795.037601 1341.515309 1552.870365 1216.643017 1839.706252 1830.149055 1.07651985 0.989777486 1.0742504 1.070783166 0.980814976 0.73300877 0.84849393 0.664778103 1.005222086 1 10.83774544 -5.349389743 3.84983454 1.038105676 0.757493709 0.859659694 0.05198157 0.059254463 1.628502014 0.007279652 0.017354489 4.47E-06 5.349389743 -0.280611967 SVS(ph)TTNIAGHFNDESPLGLR ddPTM_HeLa_CUDC101_4h_R1 4 SVSTTNIAGHFNDESPLGLR 20 0 Q92974-2;Q92974;V9GYM8;A0A5F9ZI21;Q92974-3;V9GYF5;V9GYG5;V9GZ14 Q92974-2 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 S(0.193)VS(0.765)T(0.039)T(0.002)NIAGHFNDESPLGLR;S(0.141)VS(0.441)T(0.371)T(0.047)NIAGHFNDESPLGLR;S(0.176)VS(0.596)T(0.176)T(0.053)NIAGHFNDESPLGLR;S(0.402)VS(0.471)T(0.118)T(0.009)NIAGHFNDESPLGLR ;;; 118.59 1.65E-05 183534200 2715.1 2479.78 2719.4 2369.43 3616.85 3593.67 3534.33 3665.96 2688.19 2935.16 TRUE FALSE FALSE 2396.840094 2556.179083 2866.41899 2466.065597 3350.042181 3525.126732 3670.650292 4083.278068 2577.38167 2917.701538 0.821482274 0.876093408 0.982423648 0.845208314 1.148178502 1.2081862 1.258062295 1.399484497 0.883360288 1 11.5106166 -5.34910557 1.337302859 0.909861011 1.338412335 0.863346513 0.070015417 0.146278181 0.485180509 0.012938838 0.048574298 4.48E-06 5.34910557 0.428551324 LGS(ph)LSAR ddPTM_HeLa_CUDC101_4h_R1 4 LGSLSAR 7 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;H0Y4T4;Q00G26 H0Y2V6 CEP170;PLIN5 Centrosomal protein of 170 kDa;Perilipin-5 1 0 LGS(0.998)LS(0.002)AR;LGS(0.999)LS(0.001)AR;LGS(0.983)LS(0.017)AR;LGS(0.998)LS(0.002)AR ;;; 128.12 0.011012 147269000 13356.8 11317.5 12625.3 13116.1 16698.6 18066.2 19520 17898.4 11215.3 11712.5 TRUE FALSE FALSE 11791.13615 11666.17876 13307.86191 13651.03125 15466.77755 17721.61734 20272.89294 19935.88151 10753.00059 11642.83353 1.012737674 1.002005116 1.143008862 1.17248359 1.328437576 1.52210519 1.7412336 1.712287774 0.923572476 1 13.50715459 -5.347900282 0.815124084 1.003877721 1.818280722 0.977926665 0.043039063 0.061380894 0.064202478 0.005530233 0.032366642 4.49E-06 5.347900282 0.814403001 RPLEDGDQPDAK ddPTM_HeLa_CUDC101_4h_R1 2 RPLEDGDQPDAK 12 1 Q96AE4;E9PEB5;Q96AE4-2 Q96AE4 FUBP1 Far upstream element-binding protein 1 0 0 ; ; 101.38 0.010956 25528000 7842.2 6988.1 7669 6924.1 7374.1 6606.3 6394.6 7363.5 7749.5 7736.5 FALSE FALSE TRUE 6922.949204 7203.395078 8083.609337 7206.494727 6830.127334 6480.295834 6641.241864 8201.731076 7430.06233 7690.482954 0.900196938 0.936663552 1.051118556 0.937066602 0.888127231 0.842638346 0.863566294 1.066478025 0.966137286 1 12.90885849 -5.99346277 22.16085776 0.958516074 0.907114193 0.114084117 0.067855555 77.16300961 261564.7308 0.010568951 0.019104603 1.02E-06 5.99346277 -0.051401881 RPLEDGDQPDAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 RPLEDGDQPDAKK 13 2 Q96AE4;E9PEB5;Q96AE4-2 Q96AE4 FUBP1 Far upstream element-binding protein 1 0 1 ; RPLEDGDQPDAK(1)K;RPLEDGDQPDAK(1)K 125.47 0.0036085 5386900 4576.2 3820.5 3820.9 3671 4085.8 3950.1 3578.7 4190.8 4541.1 4161.5 FALSE TRUE FALSE 4039.784773 3938.205077 4027.469412 3820.719247 3784.398674 3874.758424 3716.731658 4667.863732 4353.913936 4136.747213 0.976560705 0.952005253 0.973583641 0.923604719 0.914824735 0.936667924 0.898467193 1.12838989 1.052496977 1 12.01428109 -7.771447639 0.981935319 0.994599125 0.95440663 0.094295967 0.063326198 0.932611399 1.897136711 0.014652477 0.013233753 1.69E-08 7.771447639 -0.040192495 ATVT(ph)PSPVK ddPTM_HeLa_CUDC101_4h_R1 1 ATVTPSPVK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 AT(0.002)VT(0.763)PS(0.236)PVK 136.52 0.01125 995170000 9460.3 6211.5 5216.3 6656.3 5937.4 5690.1 4556 3842.7 5870.8 6192.7 TRUE FALSE FALSE 8351.377975 6402.868953 5498.308956 6927.772685 5499.409831 5581.570823 4731.726446 4280.137435 5628.803139 6155.865545 1.356653734 1.040124887 0.893182107 1.125393762 0.89336094 0.906707722 0.768653313 0.695294172 0.914380455 1 12.58774601 -5.347352345 0.671079816 1.15639855 0.667277783 0.389775662 0.138250222 0.713943956 0.46211098 0.029699831 0.204021352 4.49E-06 5.347352345 -0.489120767 RPLEEDWR ddPTM_HeLa_CUDC101_4h_R1 2 RPLEEDWR 8 1 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 0 0 ; ; 109.48 0.012381 10061500 4658.1 3879 4040 3451 3692.2 3303.2 2921.1 4195.1 4010.6 4095.9 FALSE FALSE TRUE 4112.084579 3998.507392 4258.41462 3591.746696 3419.833762 3240.196964 3033.767806 4672.653227 3845.28137 4071.537405 1.009958689 0.982063283 1.04589844 0.882159818 0.839936717 0.795816578 0.745116035 1.147638536 0.944429828 1 11.99135794 -6.190231969 6.096017569 1.005502854 0.866216407 0.22749995 0.102774742 0.206008843 13.93737918 0.01402225 0.023356464 6.45E-07 6.190231969 -0.139286448 VTNDIS(ph)PESS(ph)PGVGR ddPTM_HeLa_CUDC101_4h_R1 3 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154;Q15154-4;Q15154-2;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 2 0 VTNDIS(1)PES(0.015)S(0.985)PGVGR;VT(0.001)NDIS(0.996)PES(0.046)S(0.957)PGVGR;VTNDIS(1)PES(0.319)S(0.681)PGVGR ;; 165.24 0.00024012 194979000 13876.8 13039.2 12346.9 12096.8 13526.2 11064.6 10449.8 10099.8 13679.9 13454.5 TRUE FALSE FALSE 12250.18254 13440.9223 13014.41076 12590.15979 12528.39917 10853.56119 10852.85229 11249.52041 13116.00873 13374.47204 0.915937654 1.00496844 0.973078468 0.941357517 0.936739719 0.811513244 0.81146024 0.84111884 0.980674878 1 13.70719432 -5.345248179 3.444092851 0.962413937 0.819293472 0.86051291 0.026571019 0.085339013 1.934357213 0.005065454 0.012380856 4.52E-06 5.345248179 -0.143120465 HS(ph)SNPPLESHVGWVMDSR ddPTM_HeLa_CUDC101_4h_R1 1 HSSNPPLESHVGWVMDSR 18 0 Q6PKG0;Q6PKG0-3;H0YC33;H0YBR8 Q6PKG0 LARP1 La-related protein 1 1 0 HS(0.542)S(0.458)NPPLESHVGWVMDSR 94.463 0.0030379 116360000 2249.5 2227.1 1990.5 1853.7 2752.1 2650.7 2627 2661.8 2572.2 2292.1 TRUE FALSE FALSE 1985.81702 2295.714311 2098.112451 1929.301898 2549.083066 2600.142314 2728.32427 2964.808553 2466.172827 2278.466487 0.871558582 1.007569927 0.920844113 0.846754565 1.118771367 1.141180846 1.197438841 1.301229827 1.082382752 1 11.15384744 -5.344411277 1.631491511 0.936791725 1.242471509 0.689808533 0.07738642 0.13736527 0.69468749 0.010459824 0.034257033 4.52E-06 5.344411277 0.305679784 GDEASEEGQNGSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 GDEASEEGQNGSSPK 15 0 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;P35611-5 E7EV99 ADD1 Alpha-adducin 1 0 GDEASEEGQNGS(0.027)S(0.973)PK;GDEASEEGQNGS(0.185)S(0.815)PK;GDEASEEGQNGS(0.083)S(0.917)PK ;; 209.56 1.68E-23 201573400 12612.2 7856.7 9614.5 9933.1 8135 8215.2 8310.2 5618.8 10271.3 10214.5 TRUE FALSE FALSE 11133.81703 8098.755615 10134.28895 10338.21475 7534.897257 8058.508747 8630.727198 6258.42148 9847.912667 10153.7437 1.096523348 0.797612768 0.998083983 1.018167787 0.742080702 0.793649021 0.850004437 0.61636591 0.969879973 1 13.30972413 -5.342918768 0.514096163 1.041982699 0.63108687 0.534178095 0.097812498 0.882558321 0.299882651 0.022744024 0.180367941 4.54E-06 5.342918768 -0.410895829 RAPS(ph)PGAYK ddPTM_HeLa_CUDC101_4h_R1 2 RAPSPGAYK 9 1 P54259 P54259 ATN1 Atrophin-1 1 0 RAPS(1)PGAYK;RAPS(1)PGAYK ; 76.165 0.027915 122124000 9034.3 8272.3 8543 8709 8786.7 7345.7 6127.6 7511.6 9182.2 8700.9 TRUE FALSE FALSE 7975.313049 8527.159758 9004.860421 9064.190664 8138.522647 7205.593011 6363.943585 8366.690181 8803.70583 8649.14666 0.922092475 0.985896077 1.041127035 1.0479867 0.940962498 0.83309872 0.735788608 0.96734285 1.017869875 1 13.07834209 -5.342683411 4.156906208 0.976474354 0.834169463 0.513787429 0.065041801 0.145962159 4.684980798 0.009439381 0.022267836 4.54E-06 5.342683411 -0.142304891 S(ph)PSASSVGSR ddPTM_HeLa_CUDC101_4h_R1 1 SPSASSVGSR 10 0 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 S(0.811)PS(0.172)AS(0.015)S(0.003)VGSR 118.23 0.0052853 54884000 2628.2 2350.9 2446.6 2608.6 2312.6 1934.5 2009.5 1520.6 2016.6 1945.7 TRUE FALSE FALSE 2320.12638 2423.328442 2578.870597 2714.989983 2142.004105 1897.602636 2087.007088 1693.698958 1933.474894 1934.12689 1.199572992 1.252931468 1.333351297 1.403728989 1.107478582 0.981115896 1.07904352 0.875691748 0.999662899 1 10.91746673 -5.342075661 4.744519549 1.152423312 0.988603136 0.320043849 0.132861597 0.288830898 11.67027473 0.022390988 0.051837516 4.55E-06 5.342075661 -0.163820177 GAPVNIS(ph)SSDLTGR ddPTM_HeLa_CUDC101_4h_R1 1 GAPVNISSSDLTGR 14 0 H7BYT1;P48730-2;P48730;J3KRM8 H7BYT1 CSNK1D Casein kinase I isoform delta 1 0 GAPVNIS(0.708)S(0.022)S(0.03)DLT(0.241)GR 75.998 0.034177 54654000 802.92 642.04 603.25 740.24 883.1 906.75 1005.7 783.79 678.45 808.84 TRUE FALSE FALSE 708.8029347 661.8204914 635.8635197 770.4301868 817.9554724 889.4552545 1044.490186 873.0134854 650.4840038 804.0289837 0.88156391 0.823130142 0.790846515 0.958211958 1.017320879 1.10624775 1.299070316 1.085798526 0.809030541 1 9.651103699 -5.341198507 1.942373806 0.921071896 1.192321356 0.680924069 0.085746497 0.169705353 1.229641399 0.013193883 0.039282185 4.56E-06 5.341198507 0.27124946 ST(ph)PPYLFPEYPEASK ddPTM_HeLa_CUDC101_4h_R1 1 STPPYLFPEYPEASK 15 0 Q8TE76-2;Q8TE76-3;Q8TE76 Q8TE76-2 MORC4 MORC family CW-type zinc finger protein 4 1 0 S(0.368)T(0.631)PPY(0.001)LFPEYPEASK 98.676 0.030965 5153500 2216.3 2128.2 1748.5 1681 1658.4 1522.6 1138.3 1139 1984.3 1661.6 TRUE FALSE FALSE 1956.508674 2193.767319 1843.029199 1749.558446 1536.063136 1493.558942 1182.204612 1268.659156 1902.506314 1651.716729 1.184530397 1.328174063 1.115826441 1.059236378 0.929979765 0.904246422 0.715742955 0.768085189 1.151835712 1 10.68975057 -5.339913477 1.282626939 1.11206737 0.740541409 0.764336998 0.087905711 0.232473081 0.702172034 0.016956545 0.066470512 4.57E-06 5.339913477 -0.371525961 RPPEDDFR ddPTM_HeLa_CUDC101_4h_R1 2 RPPEDDFR 8 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 0 0 ; ; 120.15 0.007771 8756400 3144.1 2633.8 2310.8 2755.8 2409.26 2321.8 2407.2 2694.7 2526.7 3212.2 FALSE FALSE TRUE 2775.553364 2714.944256 2435.728838 2868.193436 2231.53369 2277.515533 2500.04651 3001.453756 2422.548357 3193.093692 0.869236431 0.850255119 0.762811578 0.898249069 0.698862578 0.713262984 0.782954323 0.93998299 0.758683769 1 11.64073917 -8.185936809 0.50223265 1.002307072 0.787747262 0 0.102019402 0.511888748 0.294972538 0.046976619 0.02399994 6.52E-09 8.185936809 -0.21455981 GHTASES(ph)DEQQWPEEK ddPTM_HeLa_CUDC101_4h_R1 1 GHTASESDEQQWPEEK 16 0 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 GHTAS(0.157)ES(0.843)DEQQWPEEK 157.68 8.15E-05 11050000 4409.9 3247.8 2886 3421.7 4444 5125.3 5437.2 3686.3 2919.6 4186.9 TRUE FALSE FALSE 3892.978207 3347.860868 3042.02589 3561.251716 4116.174974 5027.543442 5646.914625 4105.933491 2799.252852 4161.996133 0.935363245 0.80438827 0.730905506 0.855659545 0.988990581 1.207964467 1.356780363 0.986529867 0.672574592 1 12.02305991 -5.339732983 4.064347686 0.928074524 1.201844294 0.487719807 0.141799451 0.146328158 4.562069928 0.018081384 0.042875478 4.57E-06 5.339732983 0.27376977 TAMPS(ph)PGVSQNK ddPTM_HeLa_CUDC101_4h_R1 6 TAMPSPGVSQNK 12 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 T(0.001)AMPS(0.999)PGVSQNK;T(0.016)AMPS(0.95)PGVS(0.034)QNK;T(0.002)AMPS(0.997)PGVS(0.001)QNK;T(0.001)AMPS(0.926)PGVS(0.073)QNK;TAMPS(0.986)PGVS(0.014)QNK;T(0.003)AMPS(0.995)PGVS(0.001)QNK ;;;;; 162.67 8.63E-05 101648600 32055.9 26283.9 28431.7 26641.1 25696.1 22172.8 21250.1 21920.3 28345.3 32606.7 TRUE FALSE FALSE 28298.356 27093.6758 29968.8037 27727.63921 23800.5499 21749.89078 22069.72348 24415.61835 27176.89474 32412.7539 0.873062378 0.835895521 0.924599119 0.855454594 0.734295826 0.671028782 0.680896278 0.75327195 0.838462996 1 14.98427398 -5.338277525 0.18960022 1.038680468 0.483022183 0.539106387 0.068308142 3.235627177 0.175787891 0.102658994 0.462992642 4.59E-06 5.338277525 -0.555658285 DIEVLS(ph)EDTDYEEDEVTK ddPTM_HeLa_CUDC101_4h_R1 1 DIEVLSEDTDYEEDEVTK 18 0 H7C5R6;Q4LE39-2;Q4LE39;H0Y7Y8;Q4LE39-4;Q4LE39-3 H7C5R6 ARID4B AT-rich interactive domain-containing protein 4B 1 0 DIEVLS(0.769)EDT(0.231)DYEEDEVTK 182.22 3.10E-11 2315400 2287.9 2298 2261.5 1711.1 2320.1 1649.4 1496.5 1433.8 2631.8 2297.5 TRUE FALSE FALSE 2019.71583 2368.798656 2383.763531 1780.886054 2148.950845 1617.940443 1554.220506 1597.017996 2523.31609 2283.834368 0.884353024 1.037202474 1.043754996 0.779778989 0.940939884 0.708431603 0.680531184 0.699270498 1.104859497 1 11.15724231 -5.337164169 1.250695983 0.954659257 0.669686509 0.671316306 0.087234944 0.221081152 0.631082903 0.012007271 0.048208644 4.60E-06 5.337164169 -0.284972748 SPS(ph)PLGTSVR ddPTM_HeLa_CUDC101_4h_R1 2 SPSPLGTSVR 10 0 Q86SQ0-2;Q86SQ0-3;Q86SQ0;G5E9V3;E9PFQ4;E9PDY7 Q86SQ0-2 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 S(0.035)PS(0.965)PLGTSVR;SPS(0.99)PLGT(0.009)SVR ; 131.42 0.0021282 43475000 5031.7 4253.2 3875.6 4021.9 4433.2 3612.6 2967.3 3139.8 4169.1 4410.3 TRUE FALSE FALSE 4441.891754 4384.236051 4085.126659 4185.930466 4106.171668 3543.695674 3081.749755 3497.22214 3997.247933 4384.067339 1.013189673 1.000038483 0.931812024 0.95480524 0.936612363 0.808312327 0.70294307 0.797711775 0.911767002 1 12.09805424 -5.334246261 1.191431843 1.001041335 0.734841761 0.796358206 0.044143035 0.10925764 0.279538182 0.00523231 0.021970096 4.63E-06 5.334246261 -0.266199575 S(ph)TGSATSLASQGER ddPTM_HeLa_CUDC101_4h_R1 1 STGSATSLASQGER 14 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.978)T(0.021)GS(0.001)ATSLASQGER 131.86 0.00077721 10235000 363.81 393.27 467.45 381.01 396.1 324.93 264.17 325.83 432.3 418.88 TRUE FALSE FALSE 321.1647433 405.3861826 492.721761 396.5492347 366.8804921 318.7325016 274.3591254 362.9211701 414.480411 416.3884831 0.771310342 0.973576837 1.18332226 0.952353993 0.88110144 0.765469062 0.65890181 0.871592719 0.995417568 1 8.701786356 -5.333818957 3.48381169 0.923991762 0.752923691 0.364428804 0.113083013 0.271516633 6.415586985 0.019443579 0.047715417 4.64E-06 5.333818957 -0.171068071 DPHLLDPTVEY(ph)VK ddPTM_HeLa_CUDC101_4h_R1 1 DPHLLDPTVEYVK 13 0 O75815 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 0 DPHLLDPTVEY(1)VK 163.71 0.00025059 9144600 5206.2 3712 3771.2 3625.9 3927.5 2970.3 2541.1 2253 4622.5 4448.3 TRUE FALSE FALSE 4595.937128 3826.36232 3975.082479 3773.779874 3637.77615 2913.646476 2639.111078 2509.472413 4431.958593 4421.841314 1.039371792 0.865332347 0.89896543 0.853440819 0.822683559 0.658921537 0.596835321 0.567517519 1.002288024 1 12.11043154 -5.333799442 0.523922287 1.021637795 0.459038599 0.939689131 0.03971727 0.282396595 0.099819584 0.010040831 0.080087319 4.64E-06 5.333799442 -0.562599196 TAS(ph)LTSAASVDGNR ddPTM_HeLa_CUDC101_4h_R1 1 TASLTSAASVDGNR 14 0 G3V578;H0YJT9;A0A0A0MS87;Q9UN36-4;Q9UN36-5;Q9UN36-2;Q9UN36-3;Q9UN36-6;Q9UN36 G3V578 NDRG2 Protein NDRG2 1 0 TAS(0.958)LT(0.041)S(0.001)AAS(0.001)VDGNR 116.63 0.0019685 6796600 739.72 499.91 547.34 655.79 814.58 912.77 853.17 895.86 918.33 708.67 TRUE FALSE FALSE 653.0111429 515.3116346 576.930856 682.5359508 754.4900563 895.360433 886.0770527 997.8410812 880.4760487 704.4547993 0.926973801 0.731504186 0.818974981 0.968885373 1.071026923 1.270997705 1.257819598 1.416472827 1.249868763 1 9.46036333 -5.333556705 1.675617883 0.932300762 1.341941865 0.613277274 0.130627042 0.141660183 0.756137384 0.014728038 0.047912378 4.64E-06 5.333556705 0.409641103 ASGS(ph)ENEGDYNPGRK ddPTM_HeLa_CUDC101_4h_R1 1 ASGSENEGDYNPGRK 15 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 0 AS(0.012)GS(0.988)ENEGDYNPGRK 65.374 0.027331 43926000 2142.9 1784.3 1981.1 1805.3 1948.1 1742.9 1570.2 1451.9 1726.6 1952.5 TRUE FALSE FALSE 1891.71251 1839.272168 2088.204258 1878.927937 1804.392544 1709.657086 1630.76314 1617.178427 1655.428817 1940.886443 0.974664189 0.94764543 1.075902336 0.968077212 0.929674454 0.880864047 0.840215637 0.833216406 0.852924097 1 10.9225 -5.332754464 1.555361838 0.9907146 0.835928755 0.478505268 0.053908104 0.129963342 0.593494225 0.004777125 0.01631887 4.65E-06 5.332754464 -0.154785845 AAAGEEETAAAGS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 2 AAAGEEETAAAGSPGR 16 0 Q9NS37;E9PIM0 Q9NS37 CREBZF CREB/ATF bZIP transcription factor 1 0 AAAGEEETAAAGS(1)PGR;AAAGEEET(0.037)AAAGS(0.963)PGR ; 139.21 0.0003464 22837700 4806.1 3498.5 3705 3770.5 3366.8 3546.8 2801.2 2538.2 4102.9 4038.6 TRUE FALSE FALSE 4242.736244 3606.284638 3905.303507 3924.277287 3118.437872 3479.150699 2909.243222 2827.138428 3933.776725 4014.578228 1.056832375 0.898297264 0.972780523 0.977506743 0.776778455 0.866629195 0.724669706 0.704218044 0.979872979 1 11.97103271 -5.331453133 0.583948686 1.025526433 0.653436058 0.783104423 0.054604974 0.418886023 0.19147836 0.011002473 0.084128858 4.66E-06 5.331453133 -0.372090375 GHTAS(ph)ESDEQQWPEEK ddPTM_HeLa_CUDC101_4h_R1 1 GHTASESDEQQWPEEK 16 0 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 GHT(0.007)AS(0.95)ES(0.043)DEQQWPEEK 260.08 6.98E-70 14154000 1802.9 1237.5 1433.3 1245.4 1574.1 1898.2 1916.2 1201.6 1204.3 1301.6 TRUE FALSE FALSE 1591.566795 1275.625908 1510.788533 1296.192795 1457.981779 1861.994998 1990.108476 1338.385287 1154.658244 1293.858025 1.230093846 0.985908719 1.167661756 1.001804502 1.126848349 1.439103025 1.538119668 1.034414334 0.892414949 1 10.3374636 -5.331422313 6.511388355 1.098297221 1.356701394 0.386900119 0.155003527 0.177542108 13.58125814 0.020536835 0.046431391 4.66E-06 5.331422313 0.258404173 RPPSAFFLFCSEHRPK ddPTM_HeLa_CUDC101_4h_R1 2 RPPSAFFLFCSEHRPK 16 2 P26583;D6R9A6 P26583 HMGB2 High mobility group protein B2 0 0 ; ; 56.482 0.020803 2525400 2522.5 2240.6 1359.66 1335.61 3512.5 2368.8 2937.2 3096.9 2619.1 1910.56 FALSE FALSE TRUE 2226.816374 2309.63023 1433.167332 1390.081949 3253.389873 2323.619087 3050.488788 3449.438578 2511.139589 1899.195904 1.172504832 1.216109526 0.754617957 0.731931838 1.71303543 1.223475199 1.606200172 1.816262646 1.322211987 1 10.89117301 -4.921407741 0.979528202 1.058465816 1.847622291 0.480396377 0.254954324 0.533942366 0.707210878 0.038070026 0.347231641 1.20E-05 4.921407741 0.789156475 RPPSAFFLFCSEYRPK ddPTM_HeLa_CUDC101_4h_R1 1 RPPSAFFLFCSEYRPK 16 2 Q5T7C4;P09429 Q5T7C4 HMGB1 High mobility group protein B1 0 0 137.93 0.0018002 4419500 1251.5 1286.1 866.38 1313.6 1203.7 1199.2 1313 926.73 1167.6 797.56 FALSE FALSE TRUE 1104.801067 1325.723217 913.2191235 1367.174286 1114.905449 1176.327258 1363.64285 1032.225197 1119.471034 792.8160776 1.393514963 1.672169945 1.151867563 1.72445328 1.406259889 1.483732849 1.719998986 1.301973088 1.412018582 1 9.630842409 -8.813063866 0.489471062 0.939520145 1.517309886 0.092795034 0.215748629 0.66909536 0.280000979 0.180515433 0.04745704 1.54E-09 8.813063866 0.577789741 VSAEAEVAPVS(ph)PEVTQEVVEEHCASPEDK ddPTM_HeLa_CUDC101_4h_R1 2 VSAEAEVAPVSPEVTQEVVEEHCASPEDK 29 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VSAEAEVAPVS(0.986)PEVT(0.014)QEVVEEHCASPEDK;VSAEAEVAPVS(0.991)PEVT(0.009)QEVVEEHCASPEDK ; 147.76 2.36E-16 552950000 9617.2 7965 7438.7 7308.8 9243.8 8906.1 8328.4 8089 9148.2 8725.2 TRUE FALSE FALSE 8489.886395 8210.392209 7840.858623 7606.884455 8561.90329 8736.230981 8649.629178 9009.819063 8771.107324 8673.302122 0.978852838 0.946628181 0.90402231 0.877045945 0.987156122 1.007255467 0.997270596 1.038799172 1.011276582 1 13.08236565 -5.32980967 4.239822359 0.970696084 1.013073623 0.247215968 0.04174365 0.350083132 12.32919024 0.00688422 0.016285029 4.68E-06 5.32980967 0.042377539 TADSSSS(ph)EDEEEYVVEK ddPTM_HeLa_CUDC101_4h_R1 1 TADSSSSEDEEEYVVEK 17 0 P45973;F8VNY3 P45973 CBX5 Chromobox protein homolog 5 1 0 TADSSS(0.017)S(0.983)EDEEEYVVEK 328.59 1.45E-167 104400000 3577.3 3666.5 3702.3 3512.8 3630.4 2127.1 2714.3 1433.1 4058.9 3850.1 TRUE FALSE FALSE 3157.974317 3779.460519 3902.457537 3656.067168 3362.592625 2086.529111 2818.99146 1596.238311 3891.590424 3827.199434 0.825139732 0.98752641 1.019664014 0.95528525 0.878603972 0.545184318 0.736567694 0.41707738 1.016824571 1 11.90207337 -5.328289486 4.366402255 0.931575954 0.582148935 0.780434043 0.09399145 0.085788957 3.22727924 0.014106472 0.033234039 4.70E-06 5.328289486 -0.349427019 RPQYSNPPVQGEVMEGADNQGAGEQGR ddPTM_HeLa_CUDC101_4h_R1 1 RPQYSNPPVQGEVMEGADNQGAGEQGR 27 1 H0Y449;P67809;C9J5V9 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 0 0 69.845 0.00018282 12507000 627.1 640.15 526.75 545.71 546.69 536.91 598.77 504.49 697.85 640.48 FALSE FALSE TRUE 553.5922886 659.8722627 555.2276983 567.9664126 506.3617679 526.6693363 621.8647595 561.9191024 669.0843276 636.6703965 0.86951159 1.036442508 0.872080281 0.892088616 0.79532796 0.827224478 0.976745209 0.882590278 1.050911635 1 9.314402874 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR ddPTM_HeLa_CUDC101_4h_R1 2 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR 30 2 H0Y449;P67809;C9J5V9 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 0 0 ; ; 92.275 3.85E-08 117950000 2489 2344.2 2061.75 2623.7 2872.8 2556.1 2414.9 2689.8 2655.8 2588 FALSE FALSE TRUE 2197.243193 2416.422023 2173.214441 2730.705827 2660.879267 2507.346651 2508.043502 2995.995959 2546.3268 2572.606461 0.854092232 0.939289417 0.844751995 1.061454936 1.034312596 0.974632805 0.974903678 1.164576085 0.989784811 1 11.32901507 -6.243297278 24.66690224 0.924206221 1.034082748 0.420056471 0.068055832 619.8360674 842759.6664 0.011316066 0.01873979 5.71E-07 6.243297278 0.109876527 RPRPTPGDGEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 RPRPTPGDGEKR 12 3 I3L4Q4;Q9BUL5-4;Q9BUL5;I3L410;I3L1N0;Q9BUL5-3 I3L4Q4 PHF23 PHD finger protein 23 0 1 RPRPTPGDGEK(1)R 76.165 0.018143 438230 0 63.195 166.35 0 0 0 0 341 0 0 FALSE TRUE FALSE 0 65.14196305 175.3433842 0 0 0 0 379.8180616 0 0 0 ELS(ph)PAGSISK ddPTM_HeLa_CUDC101_4h_R1 1 ELSPAGSISK 10 0 O95453;O95453-3;O95453-2;A0A494C0W0;A0A494C0K5;A0A494C0Q6;O95453-4 O95453 PARN Poly(A)-specific ribonuclease PARN 1 0 ELS(1)PAGSISK 122.18 0.0043079 647960000 4675.4 3943.2 3701.2 3840.2 4322.4 3255 3481.2 3048.6 4365.6 4064.4 TRUE FALSE FALSE 4127.356699 4064.685318 3901.298068 3996.819955 4003.545163 3192.916298 3615.47105 3395.640301 4185.64812 4040.224768 1.02156611 1.006054255 0.965614116 0.989256832 0.990921395 0.790281849 0.89486879 0.840458266 1.035993877 1 11.98021984 -5.327931329 6.97612538 1.004223581 0.847459085 0.858973493 0.029580218 0.059445987 5.349900993 0.003915295 0.008829564 4.70E-06 5.327931329 -0.156764495 TNS(ph)PAYSDISDAGEDGEGKVDSVK ddPTM_HeLa_CUDC101_4h_R1 1 TNSPAYSDISDAGEDGEGKVDSVK 24 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 T(0.119)NS(0.344)PAY(0.223)S(0.273)DIS(0.041)DAGEDGEGKVDSVK 115.63 1.51E-07 14089000 1588.3 2017.1 1786.3 1809.7 1536.3 1751.3 1311.4 1276.3 2530.7 2102.6 TRUE FALSE FALSE 1402.121882 2079.24446 1882.872781 1883.507388 1422.97021 1717.89687 1361.981137 1421.588833 2426.383475 2090.093642 0.670841657 0.994809237 0.900855705 0.901159331 0.680816487 0.821923399 0.65163642 0.68015557 1.160897017 1 11.02935186 -5.327737863 1.227901091 0.860199718 0.676035913 0.295403578 0.139173417 0.626592217 1.712410362 0.02140921 0.088219549 4.70E-06 5.327737863 -0.184163804 ELVGPPLAETVFT(ph)PKT(ph)SPENVQDR ddPTM_HeLa_CUDC101_4h_R1 1 ELVGPPLAETVFTPKTSPENVQDR 24 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 2 0 ELVGPPLAET(0.048)VFT(0.644)PKT(0.716)S(0.592)PENVQDR 67.728 0.002144 24140000 1343 1302.3 1334 1028.1 1458.9 1570.2 1541.4 1396 1481.9 1316.5 TRUE FALSE FALSE 1185.575576 1342.422319 1406.120075 1070.030362 1351.279854 1540.251051 1600.852314 1554.914997 1420.815455 1308.669399 0.90593971 1.025791785 1.074465465 0.817647576 1.032560136 1.176959629 1.223267171 1.188164863 1.085694718 1 10.35388497 -5.325702586 3.390710051 0.96076818 1.202922283 0.588636276 0.077269409 0.098892875 2.243934366 0.009885993 0.0245402 4.72E-06 5.325702586 0.242154103 EAEDS(ph)DSDDNIKR ddPTM_HeLa_CUDC101_4h_R1 1 EAEDSDSDDNIKR 13 1 Q96ST2-3;Q96ST2;Q96ST2-2 Q96ST2-3 IWS1 Protein IWS1 homolog 1 0 EAEDS(0.959)DS(0.041)DDNIKR 157.2 0.00016751 6938200 2407.2 2270 2181.9 1763.5 1909.5 1447.4 1536.3 1265.5 2219.3 1294 TRUE FALSE FALSE 2125.031665 2339.936009 2299.860114 1835.423152 1768.639989 1419.793257 1595.555606 1409.559405 2127.819515 1286.30323 1.652045657 1.81911695 1.787961081 1.426897724 1.374979046 1.103778038 1.240419497 1.09582202 1.654212991 1 10.32901507 -5.325457789 5.604548124 1.404618923 1.156310867 0.242349277 0.249101804 0.392821041 24.74477334 0.047822019 0.109384746 4.73E-06 5.325457789 -0.248308056 MYS(ph)FDDVLEEGK ddPTM_HeLa_CUDC101_4h_R1 2 MYSFDDVLEEGK 12 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;E9PJ10 E9PMS6 LMO7 LIM domain only protein 7 1 0 MYS(1)FDDVLEEGK;MYS(1)FDDVLEEGK ; 134.21 0.001431 9606900 4235.3 3756.27 3286.07 3841.02 4714.2 4645.9 4733.9 4284.1 4213.7 4442.2 TRUE FALSE FALSE 3738.844554 3871.996226 3463.724884 3997.673398 4366.442858 4557.287198 4916.488109 4771.784627 4040.009503 4415.777597 0.846701282 0.876854901 0.784397495 0.905315839 0.988827621 1.032046361 1.113391243 1.080621594 0.914903302 1 12.1084518 -5.324168202 1.875179225 0.908892921 1.09291719 0.690894277 0.055870685 0.221833414 1.492766381 0.011323315 0.03482264 4.74E-06 5.324168202 0.184024269 AAIELPSLEVLS(ph)DQEEDREQCGVK ddPTM_HeLa_CUDC101_4h_R1 2 AAIELPSLEVLSDQEEDREQCGVK 24 1 Q9BQI3-2;Q9BQI3 Q9BQI3-2 EIF2AK1 Eukaryotic translation initiation factor 2-alpha kinase 1 1 0 AAIELPS(0.137)LEVLS(0.863)DQEEDREQCGVK;AAIELPS(0.306)LEVLS(0.694)DQEEDREQCGVK ; 73.783 0.00030647 23449000 2586.5 2026.01 1935.41 1804.39 2076.03 1526.97 1706.39 1193.9 2386.7 1828.99 TRUE FALSE FALSE 2283.314391 2088.428967 2040.044119 1877.980823 1922.885403 1497.845591 1772.206034 1329.80875 2288.319216 1818.111086 1.255871772 1.148680618 1.122067917 1.032929637 1.057628116 0.823847125 0.974751239 0.731423267 1.258624532 1 10.82822464 -5.32288202 1.06202289 1.126174446 0.812521487 0.665482618 0.093457265 0.358725988 0.702154588 0.017420273 0.082229057 4.75E-06 5.32288202 -0.313652959 PSTQPRPDS(ph)WGEDNWEGLETDSR ddPTM_HeLa_CUDC101_4h_R1 2 PSTQPRPDSWGEDNWEGLETDSR 23 1 H0YDH0;E9PPN3;E9PS17;Q96KG9-3;Q96KG9-2;Q96KG9 H0YDH0 SCYL1 N-terminal kinase-like protein 1 0 PSTQPRPDS(1)WGEDNWEGLETDSR;PSTQPRPDS(1)WGEDNWEGLETDSR ; 143.09 1.46E-07 104735000 3987.2 3066.9 3030.8 3103.2 3254.3 2390.8 2533.4 1792.78 2717.7 2862 TRUE FALSE FALSE 3519.82646 3161.387554 3194.654216 3229.761909 3014.236772 2345.199473 2631.114087 1996.862829 2605.675256 2844.976697 1.237207484 1.111217381 1.122910504 1.135250743 1.059494363 0.824329941 0.924827992 0.70189075 0.915886326 1 11.47420112 -5.320443337 2.922248284 1.116940471 0.820604971 0.602786237 0.097214154 0.127091244 2.130451495 0.014180592 0.036730032 4.78E-06 5.320443337 -0.296335499 EMVPLGDS(ph)HSLK ddPTM_HeLa_CUDC101_4h_R1 1 EMVPLGDSHSLK 12 0 A0A0J9YWL9 A0A0J9YWL9 1 0 EMVPLGDS(0.997)HS(0.003)LK 79.886 0.0030485 0 1518.7 1143 1005 1121 1342 941.65 1154.6 968.61 1274.1 1022.4 TRUE FALSE FALSE 1340.680288 1178.214475 1059.33334 1166.719225 1243.003334 923.6895951 1199.133309 1078.872647 1221.581059 1016.318719 1.319153394 1.159296245 1.042323948 1.147985571 1.223044809 0.908858193 1.179879191 1.061549518 1.201966505 1 9.989137189 -5.319968146 24.99985075 1.150236876 1.063070402 0.174666011 0.104039088 517.4915961 221039.4018 0.019241553 0.043025432 4.79E-06 5.319968146 -0.087166473 SEEIS(ph)ESESEETNAPK ddPTM_HeLa_CUDC101_4h_R1 1 SEEISESESEETNAPK 16 0 P54259 P54259 ATN1 Atrophin-1 1 0 SEEIS(0.5)ES(0.5)ESEETNAPK 275.42 5.91E-86 24974000 2070.2 1932.3 1951.3 1855.6 1619.2 1424.8 1009.2 976.38 2271.7 1969.8 TRUE FALSE FALSE 1827.534294 1991.831873 2056.79318 1931.279389 1499.754842 1397.624314 1048.125182 1087.527153 2178.059564 1958.083542 0.93332805 1.017235389 1.050411352 0.986311027 0.765929956 0.713771544 0.535281136 0.555403858 1.112342511 1 10.9352266 -5.319129729 1.441450921 0.980445168 0.544375581 0.90083237 0.062471974 0.082087446 0.318108455 0.007851484 0.028696392 4.80E-06 5.319129729 -0.436069587 ATFSGS(ph)AGR ddPTM_HeLa_CUDC101_4h_R1 2 ATFSGSAGR 9 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 ATFS(0.001)GS(0.999)AGR;ATFS(0.027)GS(0.973)AGR ; 112.85 0.0088126 48590000 4431.4 3242.5 3559.2 3925.8 3976.8 3095.4 3416.1 3048.9 3461.5 3352.8 TRUE FALSE FALSE 3911.95801 3342.397582 3751.621118 4085.911093 3683.439387 3036.360402 3547.860121 3395.974452 3318.815505 3332.857396 1.173754993 1.002862464 1.125647056 1.22594837 1.105189616 0.9110382 1.064510028 1.018937821 0.995786831 1 11.70254387 -5.317846069 24.9995729 1.093480601 1.004796369 0.213628233 0.080133716 363.3807386 161050.5842 0.012625994 0.028232589 4.81E-06 5.317846069 -0.088684232 SLIGS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 2 SLIGSPGR 8 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 SLIGS(1)PGR;SLIGS(1)PGR ; 99.013 0.019747 95405000 11741 10738.5 9700.7 8998.2 9654.3 7313.8 7149.3 6676.8 11453.4 12012.6 TRUE FALSE FALSE 10364.73778 11069.34046 10225.14919 9365.18549 8942.121523 7174.301451 7425.050896 7436.859923 10981.286 11941.14852 0.867984998 0.926991272 0.856295286 0.784278453 0.748849368 0.600804976 0.621803747 0.622792683 0.919617237 1 13.54365398 -5.317604494 0.329807068 0.98101554 0.434417134 0.90682561 0.041368147 0.762444534 0.099646401 0.020366394 0.154352163 4.81E-06 5.317604494 -0.546598406 DAS(ph)VPLIDVTNLPTPR ddPTM_HeLa_CUDC101_4h_R1 2 DASVPLIDVTNLPTPR 16 0 Q96A65;Q96A65-2 Q96A65 EXOC4 Exocyst complex component 4 1 0 DAS(1)VPLIDVTNLPTPR;DAS(0.999)VPLIDVT(0.001)NLPTPR ; 154.52 6.20E-05 3291600 1452.11 971.91 1091.63 1124.46 1438.21 1721.87 1585.37 1558.75 942.62 1315.63 TRUE FALSE FALSE 1281.895867 1001.853395 1150.64682 1170.320339 1332.116114 1689.028199 1646.518252 1736.191799 903.7648046 1307.804574 0.98018916 0.766057418 0.879830857 0.894874022 1.018589581 1.291498923 1.258994107 1.327562109 0.691054935 1 10.35293126 -5.31727067 3.738230619 0.956528428 1.293019843 0.719566585 0.110394112 0.082080056 2.330916223 0.012120345 0.029598533 4.82E-06 5.31727067 0.336491415 SSS(ph)PVGLAK ddPTM_HeLa_CUDC101_4h_R1 2 SSSPVGLAK 9 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(0.02)S(0.223)S(0.757)PVGLAK;S(0.34)S(0.058)S(0.602)PVGLAK ; 130.98 0.0030726 497420000 14860.3 13120.5 13134.8 13367.6 14259.7 13264.7 12140.2 11782.8 13188.1 13624 TRUE FALSE FALSE 13118.39816 13524.72705 13844.90702 13912.78851 13207.79034 13011.69795 12608.45158 13124.10632 12644.48094 13542.96384 0.96865046 0.998653412 1.022295207 1.027307513 0.975251097 0.960771815 0.930996474 0.969071946 0.933656848 1 13.72525588 -5.317145279 3.176799555 0.991867078 0.950287478 0.286249343 0.026644643 0.199720599 3.999627413 0.003295922 0.008364446 4.82E-06 5.317145279 -0.0415796 (ac)S(ph)DQDHSMDEMTAVVK ddPTM_HeLa_CUDC101_4h_R1 5 SDQDHSMDEMTAVVK 15 0 P08047;H3BUU5;P08047-3 P08047 SP1 Transcription factor Sp1 1 0 S(0.968)DQDHS(0.032)MDEMTAVVK;S(0.488)DQDHS(0.5)MDEMT(0.012)AVVK;S(0.992)DQDHS(0.008)MDEMTAVVK;S(0.5)DQDHS(0.5)MDEMTAVVK;S(1)DQDHSMDEMTAVVK ;;;; 96.067 5.40E-43 76244900 14707.8 13200.1 12264.14 12384 15409.1 16360.2 16966.2 14441.2 13467.5 13356.5 TRUE FALSE FALSE 12983.77398 13606.77944 12927.17651 12889.07305 14272.40139 16048.15644 17620.59202 16085.12783 12912.36395 13277.05494 0.977910691 1.024834159 0.973647888 0.970778015 1.074967412 1.208713567 1.327146125 1.211498175 0.972532237 1 13.69664755 -5.314598019 2.271047935 0.989957836 1.270138675 0.930304851 0.032255855 0.047254783 0.471056099 0.00421606 0.011951234 4.85E-06 5.314598019 0.280180839 SIGS(ph)PESTPK ddPTM_HeLa_CUDC101_4h_R1 1 SIGSPESTPK 10 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6;Q8NEY1-5;H0Y6F6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(0.001)IGS(0.855)PES(0.009)T(0.135)PK 145.91 0.00076143 98838000 3642.8 3686.9 3354.4 3537.3 3741.9 3135.9 2974.2 3007.3 3880.9 3685.1 TRUE FALSE FALSE 3215.796506 3800.489019 3535.749011 3681.566384 3465.867492 3076.087932 3088.91589 3349.638876 3720.927659 3663.180861 0.877869979 1.037483314 0.965212788 1.005019005 0.946136056 0.839731383 0.843233247 0.914407179 1.015764113 1 11.83888122 -5.314232031 6.920715407 0.955355851 0.863637596 0.482126369 0.049584595 0.203967347 22.60092307 0.008242219 0.01865086 4.85E-06 5.314232031 -0.091718255 VS(ph)PSTSYTPSR ddPTM_HeLa_CUDC101_4h_R1 2 VSPSTSYTPSR 11 0 Q9BTE3;Q9BTE3-2 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein 1 0 VS(0.938)PS(0.017)T(0.017)S(0.017)YT(0.011)PSR;VS(0.994)PS(0.004)T(0.001)S(0.001)YTPSR ; 128.36 0.0024336 331310000 2578.08 1651.24 1855.93 2103.52 2257.1 1840.63 1799.76 1958.97 2049.33 1858.19 TRUE FALSE FALSE 2275.881371 1702.112747 1956.26719 2189.310638 2090.59823 1805.523049 1869.177346 2181.971226 1964.85575 1847.137403 1.232112655 0.921486807 1.059080492 1.185245144 1.131804394 0.977470894 1.011931946 1.181271747 1.063730152 1 10.85107547 -5.31391913 24.99445062 1.100705587 1.05239478 0 0.097263985 1008.340062 480238.8301 0.016374624 0.036614817 4.85E-06 5.31391913 -0.048310807 SRTS(ph)VQTEDDQLIAGQSAR ddPTM_HeLa_CUDC101_4h_R1 3 SRTSVQTEDDQLIAGQSAR 19 1 G3XAM7;P35221-3;P35221;P35221-2;A0A0A0MTJ6;A0A0A0MRI5;P26232-4;P26232-6;P26232-3;P26232-2;P26232-5;P26232 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 0 S(0.291)RT(0.291)S(0.417)VQTEDDQLIAGQSAR;S(0.203)RT(0.203)S(0.595)VQTEDDQLIAGQSAR;S(0.031)RT(0.333)S(0.634)VQT(0.002)EDDQLIAGQSAR ;; 130.98 2.23E-05 118715000 3220.86 2892.76 2285.19 2646.05 2473.88 2351.05 2409.92 1731.18 2712.18 2947.11 TRUE FALSE FALSE 2843.315673 2981.882507 2408.734284 2753.967356 2291.386801 2306.207638 2502.871422 1928.250534 2600.382792 2929.580459 0.970553877 1.017853085 0.822211343 0.940055204 0.782155272 0.787214303 0.85434466 0.658200231 0.887629758 1 11.51647836 -5.312327093 0.409315988 1.000949864 0.648786487 0.589207055 0.069032627 0.92747299 0.186397635 0.016859929 0.140236363 4.87E-06 5.312327093 -0.352163377 S(ph)VSSPTSSNTPTPTK ddPTM_HeLa_CUDC101_4h_R1 1 SVSSPTSSNTPTPTK 15 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 S(0.862)VS(0.128)S(0.01)PTSSNTPTPTK 290.37 9.50E-104 42931000 1962.4 2489.9 1855.5 2231.7 2348.5 3941.1 3579.7 2917.5 1259.7 1278.9 TRUE FALSE FALSE 1732.370447 2566.610868 1955.813943 2322.718372 2175.255834 3865.930084 3717.770228 3249.616407 1207.774633 1271.293046 1.362683806 2.018897906 1.538444617 1.827051898 1.711057762 3.040943311 2.924400664 2.556150541 0.950036372 1 10.31208091 -5.312214315 0.33250765 1.011761082 3.625608336 0.789676983 0.323253486 1.126986798 0.149167199 0.143270522 1.097323773 4.87E-06 5.312214315 2.613847254 up SHWDDST(ph)SDSELEK ddPTM_HeLa_CUDC101_4h_R1 1 SHWDDSTSDSELEK 14 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 SHWDDST(0.979)S(0.02)DSELEK 164.63 3.14E-05 3381800 3170.1 2886.2 3057.1 3360.8 3253.1 2762.1 2566.5 2579.7 2899.3 3236.4 TRUE FALSE FALSE 2798.505684 2975.120401 3222.376073 3497.867951 3013.125294 2709.417544 2665.490765 2873.36262 2779.789627 3217.149749 0.869871129 0.924769014 1.00162452 1.087256803 0.936582233 0.842179493 0.82852555 0.893139221 0.864053539 1 11.65156738 -5.309748448 5.716346379 0.952620639 0.851949667 0.341990642 0.063816916 0.198345338 15.83921576 0.010297469 0.023671693 4.90E-06 5.309748448 -0.100670973 SSSS(ph)SQESLNRPFSSK ddPTM_HeLa_CUDC101_4h_R1 1 SSSSSQESLNRPFSSK 16 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 S(0.007)S(0.002)S(0.01)S(0.836)S(0.146)QESLNRPFSSK 118.23 0.00032449 118770000 2805.1 2551.3 2256 2249.5 2442.2 1998.2 2020.8 1736.9 2405.9 2031.3 TRUE FALSE FALSE 2476.29043 2629.902529 2377.966184 2341.244333 2262.043772 1960.087664 2098.742933 1934.621675 2306.727784 2019.217737 1.226361271 1.302436325 1.177667044 1.159480867 1.120257479 0.970716346 1.039384161 0.958104537 1.142386847 1 10.97958077 -5.308602028 6.022351402 1.134807199 0.994399532 0.482600829 0.078239296 0.21901243 20.05338275 0.015686661 0.035913406 4.91E-06 5.308602028 -0.140407667 IQPEEKPVEVS(ph)PAVTK ddPTM_HeLa_CUDC101_4h_R1 2 IQPEEKPVEVSPAVTK 16 1 Q8N0X7 Q8N0X7 SPG20 Spartin 1 0 IQPEEKPVEVS(0.993)PAVT(0.007)K;IQPEEKPVEVS(0.849)PAVT(0.151)K ; 78.708 0.010217 65452000 7265.7 6206.7 5625.3 6255.2 6126.6 5351.6 5379.7 2023.31 6383.6 6302.5 TRUE FALSE FALSE 6414.02566 6397.92107 5929.420734 6510.314093 5674.652924 5249.527146 5587.196831 2253.635432 6120.465306 6265.01245 1.023784982 1.021214422 0.946433991 1.039154215 0.905768818 0.837911686 0.891809374 0.35971763 0.976927876 1 12.61310166 -4.110999122 1.272806599 1.000484185 1.51E-43 0.891013599 0.062925509 0.415065936 0.445349861 0.008784209 0.590323351 7.74E-05 4.110999122 -1.000484185 down AFDGAGSS(ph)LGR ddPTM_HeLa_CUDC101_4h_R1 2 AFDGAGSSLGR 11 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 AFDGAGS(0.096)S(0.904)LGR;AFDGAGS(0.028)S(0.972)LGR ; 139.76 1.98E-05 0 10119.4 7703.7 8231.7 8228.3 9481.6 9811.8 10022.3 7895.1 7751.9 8399.6 TRUE FALSE FALSE 8933.219272 7941.041866 8676.730602 8563.88564 8782.161258 9624.656263 10408.86347 8793.846271 7432.363401 8349.638806 1.0698929 0.951064118 1.039174365 1.025659413 1.051801337 1.152703307 1.2466244 1.0532008 0.890141906 1 13.02749807 -5.307559361 3.683272636 1.027459635 1.162008928 0.472960214 0.06815354 0.1261952 3.555805311 0.007413929 0.018291397 4.93E-06 5.307559361 0.134549293 VDGIPNDS(ph)SDSEMEDK ddPTM_HeLa_CUDC101_4h_R1 1 VDGIPNDSSDSEMEDK 16 0 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 VDGIPNDS(0.498)S(0.498)DS(0.004)EMEDK 190.19 3.37E-11 14286000 3011 2108.7 2006 2413.5 2191.6 1732 1816 1349 2103.2 2408.8 TRUE FALSE FALSE 2658.055144 2173.666548 2114.450428 2511.932962 2029.930034 1698.964986 1886.043728 1502.564707 2016.505206 2394.47235 1.110079698 0.907785194 0.883054852 1.049054904 0.847756723 0.709536272 0.787665695 0.62751391 0.842150132 1 11.22549206 -5.306498542 0.611111892 1.046215904 0.60575215 0.517008428 0.098377084 0.509900593 0.256838183 0.016256538 0.125227773 4.94E-06 5.306498542 -0.440463753 RPWEEDFR ddPTM_HeLa_CUDC101_4h_R1 2 RPWEEDFR 8 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 0 0 ; ; 125.16 0.0067823 22442000 7852.8 5886.5 6116.7 6161.9 6320 5265.9 5073.3 6419.4 6375.7 6039.5 FALSE FALSE TRUE 6932.306688 6067.856088 6447.387304 6413.208916 5853.786191 5165.461731 5268.97888 7150.158548 6112.890947 6003.576785 1.154696098 1.010706834 1.073924351 1.068231347 0.975049775 0.860397379 0.877639958 1.190983109 1.018208173 1 12.55160656 -5.733055538 5.146949382 1.069486758 0.959315263 0.122914497 0.094014026 0.224387216 15.13601856 0.01431433 0.028380995 1.85E-06 5.733055538 -0.110171496 S(ph)QEQENHATLVSFS(ph)EEEKY(ph)QLRK ddPTM_HeLa_CUDC101_4h_R1 1 SQEQENHATLVSFSEEEKYQLRK 23 2 Q6PI26-2;Q6PI26 Q6PI26-2 SHQ1 Protein SHQ1 homolog 3 0 S(0.982)QEQENHAT(0.042)LVS(0.332)FS(0.647)EEEKY(0.997)QLRK 53.679 0.0020524 0 538.34 361.7 370.3 342.81 529.7 614.27 578.93 492.88 554.01 547.23 TRUE FALSE FALSE 475.2366013 372.8435483 390.3195381 356.7912736 490.6250863 602.5538232 601.259524 548.9874669 531.1734733 543.9750516 0.873636759 0.685405603 0.717532058 0.655896392 0.901925713 1.107686504 1.105307168 1.009214421 0.976466608 1 9.087396676 -5.304800789 6.445107866 0.877849689 1.077176489 0.432196955 0.119756501 0.210261002 23.90163004 0.020956582 0.04782346 4.96E-06 5.304800789 0.1993268 SSPSTGS(ph)LDSGNESK ddPTM_HeLa_CUDC101_4h_R1 1 SSPSTGSLDSGNESK 15 0 A0A0U1RQT1;A0A087X1H5;Q15057 A0A0U1RQT1 ACAP2 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2" 1 0 SSPS(0.01)T(0.155)GS(0.732)LDS(0.102)GNES(0.001)K 140.77 0.00042496 16605000 3206.9 2640.3 2519 2630.4 2875.4 2399.4 2336.9 2158 2786.5 2943 TRUE FALSE FALSE 2830.992043 2721.644513 2655.18476 2737.679082 2663.287471 2353.635443 2427.035016 2403.657997 2671.639291 2925.494905 0.967696795 0.930319348 0.907601909 0.935800325 0.910371598 0.804525565 0.829615191 0.8216244 0.913226438 1 11.51446499 -5.303266162 0.341387664 0.999861347 0.736850689 0.678546886 0.034623628 0.772832493 0.107078483 0.009825749 0.077125975 4.97E-06 5.303266162 -0.263010658 RPYDLDR ddPTM_HeLa_CUDC101_4h_R1 1 RPYDLDR 7 1 Q15424-2;Q15424;Q15424-4;Q15424-3;K7EII0;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 0 87.181 0.002457 0 1074.8 760.5 502.99 1081.4 554.53 619.71 612.24 635.93 657.75 437.54 FALSE FALSE TRUE 948.8135733 783.9301036 530.1831609 1125.504166 513.6234267 607.8900643 635.8543019 708.3217007 630.6372666 434.9374926 2.181494098 1.802397165 1.218987027 2.587737745 1.180913201 1.397649259 1.461944102 1.628559765 1.449949193 1 8.764664268 -9.594125264 1.406708693 1.00244214 1.738551771 0.112508951 0.433560885 0.429105396 1.531373331 0.294118839 0.069176251 2.55E-10 9.594125264 0.736109631 SEEPAGQILSHLS(ph)SELK ddPTM_HeLa_CUDC101_4h_R1 1 SEEPAGQILSHLSSELK 17 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SEEPAGQILS(0.065)HLS(0.467)S(0.467)ELK 76.678 0.010871 3056600 452.33 518.59 392.69 461.42 608.05 675.7 565.77 674.33 568.62 731.26 TRUE FALSE FALSE 399.3085631 534.5671432 413.9200092 480.238702 563.1953629 662.8121483 587.5919384 751.0930015 545.1812429 726.910433 0.549322922 0.735396163 0.569423674 0.660657325 0.774779584 0.911820932 0.808341594 1.033267604 0.749997824 1 9.505633802 -5.302782967 4.4782609 0.75074967 0.908055702 0.308335548 0.130291058 0.347609186 16.07668178 0.027036931 0.064489576 4.98E-06 5.302782967 0.157306033 EGS(ph)MGEDTLPDQGPPYER ddPTM_HeLa_CUDC101_4h_R1 1 EGSMGEDTLPDQGPPYER 18 0 A0A1B0GV68 A0A1B0GV68 1 0 EGS(1)MGEDTLPDQGPPYER 216.72 3.93E-44 0 430.89 631.12 507.32 549.26 554.48 373.75 447.98 412.44 478.01 568.65 TRUE FALSE FALSE 380.3817274 650.5640591 534.7472538 571.6611969 513.5771151 366.6213415 465.2587387 459.3905025 458.3062255 565.2676445 0.672923227 1.150895625 0.946007186 1.011310664 0.908555655 0.648580093 0.823076897 0.812695556 0.81077739 1 9.14279031 -5.30210142 24.75476823 0.889829605 0.767613309 0.219194399 0.130817578 773.1261419 470672.7284 0.02326068 0.052013002 4.99E-06 5.30210142 -0.122216296 RQDEDYDEQVEESLQDEDDNDVYILTK ddPTM_HeLa_CUDC101_4h_R1 3 RQDEDYDEQVEESLQDEDDNDVYILTK 27 1 H0Y8C6;O00410-2;O00410;O00410-3 H0Y8C6 IPO5 Importin-5 0 0 ;; ;; 183.24 1.80E-17 105552200 5513.56 4508.11 4215.99 3913.66 5578.69 4892.1 4674.33 4531.09 4398.6 4055.65 FALSE FALSE TRUE 4867.268855 4646.999526 4443.919172 4073.275971 5167.161153 4798.791343 4854.620474 5046.89097 4217.287846 4031.526813 1.20730162 1.152664918 1.102291856 1.010355669 1.2816884 1.190316117 1.204164253 1.251855985 1.046077092 1 11.9771106 -13.33951491 0.248291936 4.61E-10 1.197644847 0.421210627 0.072317876 29.83835007 0.427426124 14.61889086 0.046020012 4.58E-14 13.33951491 1.197644847 RQDLEDSLQAQQYFADANEAESWMR ddPTM_HeLa_CUDC101_4h_R1 1 RQDLEDSLQAQQYFADANEAESWMR 25 1 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 58.332 0.006916 3685900 683.99 661.92 646.74 677.68 933.47 768.12 563.79 627.14 892.6 774.11 FALSE FALSE TRUE 603.8137291 682.3129706 681.7047207 705.3187196 864.6097778 753.4693908 585.5355692 698.5310826 855.8066502 769.5055593 0.78467754 0.886690112 0.88589967 0.916586906 1.123591334 0.979160425 0.760924417 0.907766129 1.112151355 1 9.587787939 -5.996893393 24.99914116 0.894155249 0.943411847 0 0.117961669 304.206456 2447923.396 0.017281516 0.031204331 1.01E-06 5.996893393 0.049256597 T(ph)ESPATAAETASEELDNR ddPTM_HeLa_CUDC101_4h_R1 1 TESPATAAETASEELDNR 18 0 Q9NTJ3;C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2 Q9NTJ3 SMC4 Structural maintenance of chromosomes protein 4 1 0 T(0.973)ES(0.023)PAT(0.004)AAETASEELDNR 179.66 1.58E-07 13106000 2526.6 2254.2 2581.6 1860.2 2399.7 2452.2 2171.9 2210.6 2378.6 2381 TRUE FALSE FALSE 2230.435778 2323.64923 2721.169105 1936.066996 2222.678912 2405.428371 2255.670911 2462.245768 2280.553101 2366.837706 0.942369547 0.981752667 1.149706673 0.817997361 0.939092235 1.016304736 0.953031509 1.040310353 0.963544351 1 11.20874507 -5.302047978 0.001842572 1.362743891 0.587091158 0 0.080494287 2817628.214 1217.551199 254044.8998 258508.0551 4.99E-06 5.302047978 -0.775652733 MESMNRPYTSLVPPLS(ph)PQPK ddPTM_HeLa_CUDC101_4h_R1 1 MESMNRPYTSLVPPLSPQPK 20 1 C9K0J5;Q70E73 C9K0J5 RAPH1 Ras-associated and pleckstrin homology domains-containing protein 1 1 0 MES(0.001)MNRPY(0.004)T(0.004)S(0.004)LVPPLS(0.986)PQPK 60.528 0.013732 53673000 2573.5 2249.3 1912.4 2198.7 2472.8 2471.1 2213.2 2147.9 2390.3 2386 TRUE FALSE FALSE 2271.838231 2318.598267 2015.790129 2288.37249 2290.386471 2423.967885 2298.563865 2392.408254 2291.770822 2371.807966 0.957850831 0.977565764 0.849896011 0.964821993 0.965671127 1.021991628 0.969118874 1.008685479 0.966254796 1 11.21177149 -5.300817097 23.90453095 0.967451215 0.996850695 0.158482279 0.040774768 612.5845731 371872.8558 0.006343542 0.014184854 5.00E-06 5.300817097 0.02939948 S(ph)PTNSLLK ddPTM_HeLa_CUDC101_4h_R1 2 SPTNSLLK 8 0 Q14106-2;Q14106 Q14106-2 TOB2 Protein Tob2 1 0 S(0.999)PT(0.001)NSLLK;S(1)PTNSLLK ; 103.31 0.01581 46061000 6372.3 5111.8 3776.1 4033.1 4334.4 4134.8 3050 3142.8 3571.2 3524.4 TRUE FALSE FALSE 5625.348654 5269.288499 3980.247388 4197.587251 4014.659947 4055.935579 3167.639522 3500.563648 3423.993624 3503.436712 1.605665841 1.504034162 1.136097985 1.198134174 1.1459205 1.157701969 0.90415206 0.99917993 0.977324241 1 11.77455512 -5.299347246 0.983730766 1.299600477 0.942334161 0.201752001 0.193574929 0.814508922 1.31795567 0.039908553 0.208426203 5.02E-06 5.299347246 -0.357266316 IQEQESS(ph)GEEDSDLSPEER ddPTM_HeLa_CUDC101_4h_R1 1 IQEQESSGEEDSDLSPEER 19 0 P41236;Q6NXS1;E7EMN6 P41236 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3 1 0 IQEQES(0.311)S(0.689)GEEDSDLSPEER 240.42 2.02E-44 28823000 1638.2 1740.3 1664.9 1828.3 1727.5 1494.2 1293.8 1373.9 1964.2 1785.4 TRUE FALSE FALSE 1446.172679 1793.91658 1754.90953 1902.865977 1600.065767 1465.700625 1343.702299 1530.299223 1883.234845 1774.780361 0.814846001 1.010782303 0.98880378 1.07216984 0.901557061 0.825849021 0.757109065 0.862247102 1.061108679 1 10.79342478 -5.297975351 3.89997782 0.936520726 0.807294606 0.399020424 0.081925562 0.226570168 7.513911832 0.013326091 0.032735701 5.04E-06 5.297975351 -0.12922612 LAIQGPEDS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 LAIQGPEDSPSR 12 0 Q15773 Q15773 MLF2 Myeloid leukemia factor 2 1 0 LAIQGPEDS(0.997)PS(0.003)R 189.33 5.35E-11 198050000 3511.8 3277.3 3449.6 2896.4 3307.2 2379.6 2260.2 1992.9 2998 3190 TRUE FALSE FALSE 3100.152128 3378.269728 3636.09581 3014.527711 3063.234445 2334.213095 2347.376671 2219.76368 2874.421171 3171.025738 0.977649626 1.065355506 1.146662345 0.950647507 0.966007437 0.736106638 0.740257842 0.7000144 0.906464157 1 11.63073387 -5.29728032 2.703534857 1.005706757 0.717863419 0.808792991 0.061835401 0.081298023 1.167565294 0.008346918 0.0225183 5.04E-06 5.29728032 -0.287843338 RQEQIQAMPLADSQAVR ddPTM_HeLa_CUDC101_4h_R1 1 RQEQIQAMPLADSQAVR 17 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 88.311 0.0061172 15185000 967.22 794.71 1145.8 1020.7 902.23 913.55 834.86 649.46 918.11 1049.9 FALSE FALSE TRUE 853.8439378 819.1940731 1207.745414 1062.328558 835.6742904 896.1255558 867.0608299 723.3919012 880.2651172 1043.655148 0.81812842 0.784927928 1.157226519 1.017892318 0.800718793 0.858641437 0.830792462 0.693133074 0.843444426 1 10.02742937 -4.152080178 0.905963058 0.922992957 0.54369342 0.288304063 0.10952519 2.753139532 1.477536026 0.018765018 1.076989331 7.05E-05 4.152080178 -0.379299536 TAPAAPAEDAVAAAAAAPSEPSEPSRPS(ph)PQPK ddPTM_HeLa_CUDC101_4h_R1 3 TAPAAPAEDAVAAAAAAPSEPSEPSRPSPQPK 32 1 Q53GA4 Q53GA4 PHLDA2 Pleckstrin homology-like domain family A member 2 1 0 TAPAAPAEDAVAAAAAAPSEPS(0.064)EPS(0.064)RPS(0.872)PQPK;TAPAAPAEDAVAAAAAAPS(0.025)EPS(0.079)EPS(0.079)RPS(0.818)PQPK;TAPAAPAEDAVAAAAAAPSEPS(0.166)EPS(0.13)RPS(0.704)PQPK ;; 146.34 1.80E-17 73457000 9133.4 6693.2 7193.5 6498.1 6469.9 5880 5388.5 4245.6 6780.4 8839.1 TRUE FALSE FALSE 8062.796697 6899.409559 7582.402369 6763.120605 5992.628367 5767.848797 5596.33625 4728.901943 6500.909042 8786.52464 0.917632059 0.785226223 0.862958073 0.76971509 0.682024875 0.656442568 0.636922615 0.538199361 0.739872624 1 13.10107693 -5.297209241 0.282879076 1.016635731 0.361511467 0.569314871 0.086895127 0.622543216 0.061099687 0.019641122 0.13599598 5.04E-06 5.297209241 -0.655124264 T(ph)PPPMAPKTPPPMT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 TPPPMAPKTPPPMTPK 16 1 Q9H987-2;Q9H987 Q9H987-2 SYNPO2L Synaptopodin 2-like protein 2 0 T(0.975)PPPMAPKT(0.057)PPPMT(0.969)PK 48.832 0.038209 43961000 851.51 1009.1 934.48 929.88 865.32 751.4 663.48 659.78 751.75 833.37 TRUE FALSE FALSE 751.6972886 1040.189175 985.0008154 967.8045257 801.4870676 737.0682969 689.0706459 734.8866883 720.7625468 828.4130782 0.90739428 1.255640697 1.189021325 1.168263215 0.967496879 0.889735225 0.831795953 0.887101746 0.87005211 1 9.694206519 -5.296912763 3.56007505 1.014287128 0.862451096 0.294002462 0.121470778 0.305213821 8.117564505 0.019837229 0.049729643 5.05E-06 5.296912763 -0.151836031 LAPVPS(ph)PEPQKPAPVS(ph)PESVK ddPTM_HeLa_CUDC101_4h_R1 4 LAPVPSPEPQKPAPVSPESVK 21 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 2 0 LAPVPS(1)PEPQKPAPVS(0.944)PES(0.056)VK;LAPVPS(1)PEPQKPAPVS(0.921)PES(0.079)VK;LAPVPS(1)PEPQKPAPVS(0.867)PES(0.133)VK;LAPVPS(1)PEPQKPAPVS(0.908)PES(0.092)VK ;;; 103.66 0.00012396 415365000 21666.2 18626.1 18406.2 17925.3 20288.8 18537.9 16729.2 16138.3 19055.9 19299.5 TRUE FALSE FALSE 19126.52088 19199.94806 19401.29485 18656.37121 18792.13564 18184.32044 17374.45085 17975.41884 18270.40774 19184.70572 0.996967124 1.000794505 1.011289677 0.972460641 0.979537342 0.947855063 0.905640728 0.936966097 0.952342351 1 14.22766901 -5.296581954 1.291544709 0.99902205 0.918574147 0.664799476 0.018681329 0.103830116 0.315029635 0.001609668 0.006576778 5.05E-06 5.296581954 -0.080447903 RQFHLTDDDLLR ddPTM_HeLa_CUDC101_4h_R1 1 RQFHLTDDDLLR 12 1 E9PGM4;Q04446 E9PGM4 GBE1 "1,4-alpha-glucan-branching enzyme" 0 0 101.3 0.0072072 3752400 569.28 258.35 524.76 565.48 568.32 602.33 489.69 572.42 489.87 399.28 FALSE FALSE TRUE 502.5498614 266.3094573 553.1301129 588.5427186 526.3961659 590.8415588 508.5775073 637.581979 469.6773513 396.9050648 1.26617145 0.670965127 1.393608099 1.482829953 1.326252075 1.488621868 1.281358069 1.606384084 1.183349352 1 8.632650162 -6.56138864 24.99999945 1.092108347 1.426450959 0.555809533 0.171749803 105.5366793 68512.31749 0.027375001 0.038714141 2.75E-07 6.56138864 0.334342612 RQFPEYQERARK ddPTM_HeLa_CUDC101_4h_R1 1 RQFPEYQERARK 12 3 O94818-4;O94818-3;O94818 O94818-4 NOL4 Nucleolar protein 4 0 0 104.42 0.011334 3912600 1253.6 801.38 883.33 887.65 1285.4 847.02 953.21 951.02 769.7 731.46 FALSE FALSE TRUE 1106.654908 826.0695679 931.0854917 923.8522038 1190.578603 830.8645047 989.975629 1059.280273 737.9726402 727.1092434 1.521992628 1.13610104 1.280530402 1.270582395 1.637413654 1.142695561 1.361522547 1.456837858 1.014940529 1 9.506028326 -9.505814308 1.208892672 0.996675541 1.361848281 0.454199301 0.150043273 0.356509159 0.918701306 0.109710928 0.025541943 3.12E-10 9.505814308 0.36517274 VQTTPS(ph)KPGGDR ddPTM_HeLa_CUDC101_4h_R1 3 VQTTPSKPGGDR 12 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 VQT(0.004)T(0.011)PS(0.985)KPGGDR;VQT(0.007)T(0.021)PS(0.971)KPGGDR;VQTT(0.021)PS(0.979)KPGGDR ;; 104.81 0.0042868 1021550000 13524.5 12180.1 12408.2 12856.1 13477 10181 10405.3 9240.6 13506.3 13262.9 TRUE FALSE FALSE 11939.17861 12555.35444 13079.02482 13380.42733 12482.82856 9986.814388 10806.63591 10292.51255 12949.5646 13184.01168 0.9055801 0.952316696 0.992036805 1.014898018 0.946815648 0.757494352 0.819677361 0.780681389 0.982217318 1 13.68650181 -5.296423308 7.427923466 0.961275739 0.789338851 0.864275958 0.033378321 0.079976044 14.67203923 0.006150994 0.013984447 5.05E-06 5.296423308 -0.171936888 S(ph)APPNLWAAQR ddPTM_HeLa_CUDC101_4h_R1 1 SAPPNLWAAQR 11 0 Q92934;F5H3B1;F5H1R6 Q92934 BAD Bcl2-associated agonist of cell death 1 0 S(1)APPNLWAAQR 84.892 0.032063 13529000 596.94 527.44 436.67 407.51 544.81 770.7 592.25 518.58 537.39 540.4 TRUE FALSE FALSE 526.9675981 543.6898012 460.2777011 424.1300192 504.6204517 756.0001816 615.0932809 577.613051 515.2385567 537.1856768 0.980978498 1.012107777 0.856831671 0.789540819 0.939378084 1.407334957 1.145029191 1.075257729 0.959144257 1 9.069277028 -5.295879701 24.76087331 0.96364745 1.202789551 0.586434742 0.103798732 316.4182169 227488.4653 0.015386203 0.034406266 5.06E-06 5.295879701 0.239142102 RPMSS(ph)PEMK ddPTM_HeLa_CUDC101_4h_R1 1 RPMSSPEMK 9 1 P51610-2;P51610;A6NEM2;P51610-4;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 RPMS(0.209)S(0.791)PEMK 105.13 0.026451 32363000 4005.7 3909.4 3590.3 3584 3117.5 2469.7 2034.7 1566.5 3407.2 3566.9 TRUE FALSE FALSE 3536.157918 4029.84398 3784.402478 3730.171011 2887.528236 2422.594587 2113.179061 1744.824028 3266.753774 3545.68392 0.997313353 1.136549132 1.06732652 1.052031454 0.814378354 0.683251706 0.595986306 0.492098018 0.921332484 1 11.79184822 -5.295195091 1.53759556 1.019715409 0.538013338 0.909901639 0.062558378 0.081734971 0.362039287 0.009091859 0.032475032 5.07E-06 5.295195091 -0.48170207 RQLEEAEEEAQR ddPTM_HeLa_CUDC101_4h_R1 4 RQLEEAEEEAQR 12 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ;;; ;;; 179.67 1.05E-07 34139900 8621.8 8960.9 9236.2 8077.6 8570.46 8668.6 7895.5 8692.8 8922.1 12836.9 FALSE FALSE TRUE 7611.165674 9236.974708 9735.53691 8407.039442 7938.234241 8503.260898 8200.03208 9682.353214 8554.327262 12760.54555 0.596460837 0.72386989 0.762940493 0.658830722 0.622092074 0.666371266 0.642608269 0.75877267 0.670373162 1 13.63940239 -9.368083371 0.940566708 1.012815255 0.672875797 0 0.11348101 0.193785856 0.287874353 0.047288468 0.010546208 4.28E-10 9.368083371 -0.339939458 RQLEEAEEESQR ddPTM_HeLa_CUDC101_4h_R1 4 RQLEEAEEESQR 12 1 P35749-4;P35749-3;P35749;P35749-2 P35749-4 MYH11 Myosin-11 0 0 ;;; ;;; 210.44 2.00E-23 119241000 7892.8 7253.2 6674.3 6951.3 8251.2 6632.8 7396.8 6014.4 7031.1 6907.3 FALSE FALSE TRUE 6967.617949 7476.662495 7035.132847 7234.80406 7642.525415 6506.290391 7682.097054 6699.054985 6741.275082 6866.215072 1.01476838 1.088905957 1.024601294 1.053681538 1.11306234 0.947580337 1.118825579 0.975654697 0.981803659 1 12.74529933 -7.48369486 15.20283154 1.006513298 1.047442341 0.142263729 0.052402576 7.128522746 2765.966727 0.007888107 0.008853334 3.28E-08 7.48369486 0.040929043 SGS(ph)PLEKDSDGLR ddPTM_HeLa_CUDC101_4h_R1 1 SGSPLEKDSDGLR 13 1 B1AKL4;Q9NRA8;Q9NRA8-3;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(0.012)GS(0.988)PLEKDS(0.001)DGLR 73.273 0.025508 44968000 5207.3 4897.2 4961.4 4961.1 6313.5 5064 4730.5 3950.3 5589.8 5316.5 TRUE FALSE FALSE 4596.908188 5048.076927 5229.628291 5163.435102 5847.765683 4967.412637 4912.95697 4399.986184 5359.386078 5284.877222 0.869823081 0.955192849 0.989545844 0.977020825 1.106509279 0.93992962 0.929625564 0.832561666 1.014098503 1 12.36765424 -5.294657285 0.002815911 1.88429839 7.30E-08 0.011711149 0.072274313 347489.1303 227.2832983 75024.98741 77071.44636 5.07E-06 5.294657285 -1.884298317 PSSS(ph)PVIFAGGQDR ddPTM_HeLa_CUDC101_4h_R1 2 PSSSPVIFAGGQDR 14 0 Q15366-2;Q15366;Q15366-3;Q15366-6;H3BSS4 Q15366-2 PCBP2 Poly(rC)-binding protein 2 1 0 PSS(0.013)S(0.986)PVIFAGGQDR;PSS(0.008)S(0.992)PVIFAGGQDR ; 149.32 0.00025577 170324000 5420.9 4273.2 4309.4 4016.9 3251.8 3112.2 2972.7 2163.79 3871.2 5600.8 TRUE FALSE FALSE 4785.47032 4404.852227 4542.379199 4180.726545 3011.921192 3052.83997 3087.358035 2410.107107 3711.627497 5567.486193 0.859538785 0.791174342 0.81587615 0.75091817 0.540984043 0.54833364 0.554533577 0.432889642 0.666661285 1 12.44281036 -5.294351304 0.279283452 1.009555906 0.201884846 0.579164269 0.108849706 0.768038857 0.073644905 0.029851462 0.205040357 5.08E-06 5.294351304 -0.80767106 RKHS(ph)PS(ph)PPPPTPTESR ddPTM_HeLa_CUDC101_4h_R1 1 RKHSPSPPPPTPTESR 16 2 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 2 0 RKHS(1)PS(1)PPPPTPTESR 57.788 0.03253 4849100 2812.4 2210.9 2804.2 2502.4 2870 2255 2151.6 2558.7 2507.6 2654.9 TRUE FALSE FALSE 2482.734735 2279.015208 2955.803534 2604.458688 2658.285818 2211.989632 2234.587933 2849.972065 2404.235667 2639.108537 0.940747491 0.863554938 1.120000748 0.986870624 1.007266575 0.838157886 0.84672074 1.079899529 0.911002952 1 11.36583497 -5.293917522 24.78150912 0.977633842 0.914105442 0.070443779 0.088511406 982.3502107 749552.2283 0.011868932 0.026542019 5.08E-06 5.293917522 -0.063528401 RHS(ph)S(ph)GS(ph)MDDRPSLSAR ddPTM_HeLa_CUDC101_4h_R1 1 RHSSGSMDDRPSLSAR 16 2 A0A087X241;Q2NKQ1-4;Q2NKQ1;Q2NKQ1-3 A0A087X241 SGSM1 Small G protein signaling modulator 1 3 0 RHS(1)S(1)GS(1)MDDRPSLSAR 64.476 0.022091 3485000 290.2 267.74 277.42 220.11 356.45 404.37 492.47 385.55 194.18 234.97 TRUE FALSE FALSE 256.1831959 275.988752 292.4181643 229.0870372 330.1553936 396.657316 511.4647329 429.4394536 186.1758182 233.572388 1.096804285 1.181598366 1.251938069 0.980796742 1.413503524 1.698220065 2.189748271 1.838571148 0.79707974 1 7.867725924 -5.292153762 1.767143716 1.069863578 2.016485478 0.86554601 0.152757027 0.073395736 0.435384778 0.018155137 0.059390786 5.10E-06 5.292153762 0.9466219 (ac)ADGDS(ph)GS(ph)ERGGGGGPCGFQPASR ddPTM_HeLa_CUDC101_4h_R1 2 ADGDSGSERGGGGGPCGFQPASR 23 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 2 0 ADGDS(1)GS(1)ERGGGGGPCGFQPASR;ADGDS(1)GS(1)ERGGGGGPCGFQPASR ; 98.676 3.56E-07 114633000 226.91 463.064 582.94 367.66 442.097 134.96 303.532 263.82 462.103 437.07 TRUE FALSE FALSE 200.3119538 477.330453 614.4554997 382.654764 409.4843851 132.3858629 315.2393309 293.8522024 443.0549187 434.4702882 0.461048682 1.098649242 1.414263567 0.880738624 0.942491112 0.304706366 0.725571666 0.67634591 1.019758844 1 8.76311371 -5.291785136 24.52901887 0.840402989 0.584544114 0.234180745 0.26762494 884.6434466 715071.8817 0.046334161 0.103619895 5.11E-06 5.291785136 -0.255858875 GLPPS(ph)VER ddPTM_HeLa_CUDC101_4h_R1 1 GLPPSVER 8 0 Q96E39 Q96E39 RBMXL1 "RNA binding motif protein, X-linked-like-1" 1 0 GLPPS(1)VER 86.882 0.033446 6441700 1975.6 1688 1724.4 1787.6 1765.6 1471.9 1440.5 1120.6 1821.8 1849.7 TRUE FALSE FALSE 1744.023163 1740.005279 1817.62628 1860.506055 1635.355206 1443.82596 1496.060568 1248.164574 1746.704633 1838.697902 0.9485099 0.946324721 0.988539922 1.01186065 0.889409404 0.785243709 0.813652186 0.678830695 0.949968252 1 10.84446875 -5.291604776 1.651185051 0.976405065 0.741731286 0.869455369 0.037371691 0.09729611 0.500764177 0.005623523 0.019201899 5.11E-06 5.291604776 -0.234673778 TNSMSSSGLGS(ph)PNR ddPTM_HeLa_CUDC101_4h_R1 3 TNSMSSSGLGSPNR 14 0 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 1 0 TNSMSS(0.001)SGLGS(0.998)PNR;TNSMSSSGLGS(1)PNR;TNSMSSSGLGS(1)PNR ;; 202.32 7.45E-17 597509000 10510.9 8782.7 8318.2 8141.6 9732.3 7707.5 7759.6 6794.2 8670.4 9423.4 TRUE FALSE FALSE 9278.828235 9053.284577 8767.907053 8473.649639 9014.367618 7560.492279 8058.890371 7567.624265 8313.002442 9367.349198 0.990550052 0.966472412 0.936007281 0.904594188 0.96231788 0.807111182 0.860317065 0.807872548 0.887444491 1 13.19342513 -5.29157411 0.461342297 1.000904145 0.764925728 0.523595728 0.046384666 0.556182395 0.143561234 0.007114269 0.061209742 5.11E-06 5.29157411 -0.235978417 S(ph)GSIVELIAGGGSSCS(ph)PVLSR ddPTM_HeLa_CUDC101_4h_R1 2 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 2 0 S(0.709)GS(0.291)IVELIAGGGS(0.02)S(0.148)CS(0.821)PVLS(0.011)R;S(0.954)GS(0.046)IVELIAGGGS(0.007)S(0.104)CS(0.885)PVLS(0.004)R ; 166.98 4.14E-07 8283400 2025.35 1667.99 1256.84 1393.15 1796.71 2042.45 2095.53 1665.95 1557.27 1470.54 TRUE FALSE FALSE 1787.941543 1719.378795 1324.788572 1449.968679 1664.170283 2003.493669 2176.355294 1855.595014 1493.078671 1461.793163 1.223115273 1.176212093 0.90627635 0.991910973 1.138444429 1.370572609 1.488825745 1.269396424 1.021402145 1 10.51352348 -5.289882808 4.070161262 1.089470211 1.391302957 0.654438157 0.102925882 0.122067385 4.636160112 0.017343068 0.042555525 5.13E-06 5.289882808 0.301832745 GS(ph)PPTSSNIVQGQIK ddPTM_HeLa_CUDC101_4h_R1 2 GSPPTSSNIVQGQIK 15 0 A2RRE0;Q9Y4E6-2;Q9Y4E6 A2RRE0 WDR7 WD repeat-containing protein 7 1 0 GS(1)PPTSSNIVQGQIK;GS(1)PPTSSNIVQGQIK ; 190.82 2.70E-11 7315800 2037.17 1452.84 1096.74 1670.04 1758.99 1182.49 1486.37 1192.27 1662.48 1318.27 TRUE FALSE FALSE 1798.376021 1497.600278 1156.033082 1738.15145 1629.232812 1159.935973 1543.699789 1327.993197 1593.951871 1310.428871 1.372356837 1.142832176 0.882179191 1.326398928 1.24328214 0.885157523 1.178011125 1.013403494 1.216358938 1 10.35582333 -5.287802685 24.81122001 1.169959818 1.040772662 0.156608559 0.151395607 1220.53854 1148679.972 0.02576199 0.057624835 5.15E-06 5.287802685 -0.129187155 (ac)MPWPFS(ph)ES(ph)IKK ddPTM_HeLa_CUDC101_4h_R1 1 MPWPFSESIKK 11 1 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 2 0 MPWPFS(1)ES(1)IKK 53.528 0.0033203 0 377.38 489.53 477.27 575.78 483.8 293.26 306.55 402.17 895.75 497.48 TRUE FALSE FALSE 333.1440885 504.6118391 503.0726599 599.2627971 448.1110379 287.6665541 318.3737362 447.9514072 858.8268059 494.5209668 0.673670301 1.020405348 1.017292883 1.21180463 0.906151747 0.581707498 0.643802301 0.905828948 1.736684314 1 8.94988788 -5.286963071 23.18989162 0.900817949 0.703781865 0.060783587 0.30725188 385.904796 350618.6194 0.027616263 0.061783763 5.16E-06 5.286963071 -0.197036083 IVS(ph)RY(ph)GVEPPVLVK ddPTM_HeLa_CUDC101_4h_R1 1 IVSRYGVEPPVLVK 14 1 Q86XJ1;G3V1N3 Q86XJ1 GAS2L3 GAS2-like protein 3 2 0 IVS(1)RY(1)GVEPPVLVK 76.357 0.023547 9035400 1055.6 1171.3 924.77 836.51 1145.9 1340.2 1060.7 1149.2 999.66 1238.1 TRUE FALSE FALSE 931.8641682 1207.386365 974.7658635 870.6264935 1061.36924 1314.637918 1101.611554 1280.020283 958.4535917 1230.735726 0.757160248 0.981028127 0.792018825 0.707403283 0.862385984 1.068172387 0.895083754 1.040044792 0.778764743 1 10.26530529 -5.286506761 23.37924196 0.868035437 0.990498654 0.328337119 0.09982471 417.6624092 389534.9409 0.01677991 0.037540699 5.17E-06 5.286506761 0.122463217 EYDSGDT(ph)DEIIAMK ddPTM_HeLa_CUDC101_4h_R1 1 EYDSGDTDEIIAMK 14 0 Q76FK4-2;Q76FK4-4;Q76FK4;F8WE42;F5H101;F5GWN9 Q76FK4-2 NOL8 Nucleolar protein 8 1 0 EYDS(0.45)GDT(0.55)DEIIAMK 180.28 1.18E-07 4724300 2833.4 2332.9 1453.6 2051.4 1844.7 1918.9 1488.7 1168 2491.8 2094 TRUE FALSE FALSE 2501.273147 2404.773884 1532.186013 2135.064959 1708.620156 1882.30018 1546.119658 1300.960399 2389.086949 2081.544795 1.201642719 1.155283273 0.736081211 1.025711752 0.820842367 0.90428041 0.742775107 0.624997551 1.147747075 1 11.02343889 -5.286144059 0.567229451 1.094612211 0.602137641 0.615165036 0.118343255 0.864109345 0.359532131 0.027650171 0.227350788 5.17E-06 5.286144059 -0.492474569 ASLGS(ph)LEGEAEAEASS(ph)PKGK ddPTM_HeLa_CUDC101_4h_R1 2 ASLGSLEGEAEAEASSPKGK 20 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 AS(0.014)LGS(0.986)LEGEAEAEAS(0.46)S(0.54)PKGK;AS(0.057)LGS(0.942)LEGEAEAEAS(0.204)S(0.797)PKGK ; 87.457 0.0026234 115767000 8503.6 9755.5 8312.4 8810.7 13232.3 10623.7 11593 12013 9824.5 10131.3 TRUE FALSE FALSE 7506.820899 10056.05539 8761.793488 9170.038429 12256.17959 10421.07062 12040.14589 13380.51136 9419.529952 10071.03858 0.745386967 0.99851225 0.869999 0.910535528 1.216972758 1.034756301 1.195521773 1.328612859 0.935308695 1 13.29792485 -5.286087452 0.795981896 0.881974394 1.303218662 0.649473613 0.099575528 0.487497741 0.466871177 0.020649082 0.133781914 5.18E-06 5.286087452 0.421244268 AEVLGHKT(ph)PEPAPR ddPTM_HeLa_CUDC101_4h_R1 2 AEVLGHKTPEPAPR 14 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7ER34;K7EJ51 Q9UHD8-7 9-Sep Septin-9 1 0 AEVLGHKT(1)PEPAPR;AEVLGHKT(1)PEPAPR ; 91.202 0.015812 100192000 5215.4 4513.4 4646.5 4064.4 5130.1 3746.7 3871.1 4204.5 5235 4580.2 TRUE FALSE FALSE 4604.058718 4652.452504 4897.703845 4230.1638 4751.662744 3675.23794 4020.409624 4683.123285 5019.211084 4552.956767 1.011223904 1.021852994 1.075719383 0.929102563 1.043643282 0.807220039 0.883032682 1.028589447 1.102406928 1 12.15258804 -5.284933526 24.9954297 1.008454999 0.903955895 0.375959467 0.068172051 545.5262185 580384.6825 0.008136124 0.018202128 5.19E-06 5.284933526 -0.104499104 DSQQTEFTQNAATGLNIS(ph)RDETVLQEEAR ddPTM_HeLa_CUDC101_4h_R1 1 DSQQTEFTQNAATGLNISRDETVLQEEAR 29 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 0 DSQQTEFT(0.007)QNAAT(0.249)GLNIS(0.737)RDET(0.007)VLQEEAR 60.951 0.0010869 5277000 399.2 140.5 237.25 166.85 205.2 167.46 139.77 0 162.11 281.93 TRUE FALSE FALSE 352.4063811 144.8286385 250.0764526 173.6548642 190.0628048 164.2659795 145.1609757 0 155.4277572 280.2530678 1.257457711 0.516778066 0.892323694 0.619635908 0.678182781 0.586134456 0.517963913 0 0.55459788 1 8.130586356 -5.284320655 0.425390748 1.121942847 2.24E-17 0.323730016 0.262805478 1.088734926 0.234171248 0.062390918 0.539699348 5.20E-06 5.284320655 -1.121942847 TQKPNPAVPPPLS(ph)SSPLYSR ddPTM_HeLa_CUDC101_4h_R1 1 TQKPNPAVPPPLSSSPLYSR 20 1 O75140;A0A2R8Y7U0;A0A2R8YEW8;A0A2R8Y721;A0A2R8Y5T1;A0A2R8Y6V4;A0A2R8Y842;A0A2R8Y6H3;A0A2R8Y5K9;H0Y770;O75140-9;O75140-4;O75140-8;O75140-1;O75140-5;O75140-6;A0A5F9UWT1;H7C1T0 O75140 DEPDC5 DEP domain-containing protein 5 1 0 TQKPNPAVPPPLS(0.673)S(0.155)S(0.155)PLY(0.003)S(0.014)R 86.825 0.0013797 15036000 2320.2 2078.4 1822.5 2268.7 2242.8 1764.6 1764.8 1822.3 1952.6 2024.4 TRUE FALSE FALSE 2048.229673 2142.43304 1921.029863 2361.227392 2077.353112 1730.943195 1832.868927 2029.743266 1872.113002 2012.358779 1.017825298 1.064637709 0.954615987 1.173363029 1.032297587 0.860156356 0.910806237 1.008638861 0.930307767 1 10.97467183 -5.28405932 24.60988861 1.022850293 0.924961056 0.289292665 0.070469097 535.9372834 583084.7184 0.008963207 0.020055675 5.20E-06 5.28405932 -0.097889236 VMPT(ph)KSPPPPGGGNLGMNSR ddPTM_HeLa_CUDC101_4h_R1 1 VMPTKSPPPPGGGNLGMNSR 20 1 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 VMPT(0.956)KS(0.044)PPPPGGGNLGMNSR 73.953 0.0080121 28667000 1411.5 1141.9 990.43 984.01 1173.8 910.92 726.7 743.04 1169.9 1101.3 TRUE FALSE FALSE 1246.04611 1177.080586 1043.975642 1024.142181 1087.211113 893.5457187 754.7290624 827.6246701 1121.676227 1094.749419 1.138202121 1.07520549 0.95362064 0.935503745 0.993114126 0.81621027 0.68940805 0.755994619 1.024596321 1 10.09638497 -5.280939363 0.81727892 1.06321873 0.676323858 0.818595293 0.05766304 0.299213749 0.305175208 0.012020821 0.076570647 5.24E-06 5.280939363 -0.386894873 IILS(ph)PFATTTK ddPTM_HeLa_CUDC101_4h_R1 2 IILSPFATTTK 11 0 Q9P0V3 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 IILS(0.982)PFAT(0.015)T(0.003)TK;IILS(0.985)PFAT(0.013)T(0.002)T(0.001)K ; 116.24 0.0052016 15565600 4325.8 3890.1 3039.3 3936.8 4155.2 3857.4 3262.2 1456.93 4004.5 4665.6 TRUE FALSE FALSE 3818.736281 4009.94937 3203.613751 4097.35972 3848.679174 3783.826522 3388.024147 1622.781022 3839.432815 4637.848804 0.823385247 0.864614079 0.690754246 0.883461254 0.82984145 0.815858102 0.7305163 0.34989951 0.827847775 1 12.17924007 -4.110749585 1.284254617 0.886280358 2.20E-31 0.76520736 0.079558279 0.764395096 0.83624945 0.014431574 0.970800938 7.75E-05 4.110749585 -0.886280358 down RQVDQLTNDK ddPTM_HeLa_CUDC101_4h_R1 2 RQVDQLTNDK 10 1 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ; ; 155.33 0.00013689 26151000 8144.8 6373.7 6667.3 7336.9 6920 6665.2 6802.6 7068.1 6510.1 6870.6 FALSE FALSE TRUE 7190.078891 6570.066142 7027.754405 7636.130495 6409.525387 6538.072415 7064.978561 7872.703934 6241.750923 6829.733366 1.052761287 0.961979889 1.028993963 1.118071539 0.938473736 0.957295412 1.034444272 1.152710291 0.913908434 1 12.73761354 -4.277021168 4.437467774 1.01745344 1.160377597 0.342596485 0.059593811 0.146287001 6.966728323 0.006938179 0.063397049 5.28E-05 4.277021168 0.142924156 EKPDS(ph)DDDLDIASLVTAK ddPTM_HeLa_CUDC101_4h_R1 4 EKPDSDDDLDIASLVTAK 18 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(1)DDDLDIASLVTAK;EKPDS(0.998)DDDLDIAS(0.002)LVTAK ;;; 132.36 3.74E-05 1055659000 32393.6 30423.8 28704.4 27403 32084.2 31485.4 29293.7 26947.9 32837.1 31255.9 TRUE FALSE FALSE 28596.47131 31361.12122 30256.24669 28520.61279 29717.41249 30884.86845 30423.56782 30015.54001 31483.54084 31069.98852 0.92038886 1.009370222 0.973809394 0.917947323 0.9564668 0.994041837 0.979194692 0.966062153 1.013310347 1 14.92323409 -5.280816557 23.86989933 0.962325147 0.979709078 0 0.03243194 1219.164842 1501837.016 0.005097988 0.011418279 5.24E-06 5.280816557 0.017383931 RRDELSEEINNLR ddPTM_HeLa_CUDC101_4h_R1 2 RRDELSEEINNLR 13 2 A0A087WZG9;B4DSP0;Q86TG7-2;A0A087WXK2;A0A087WUL4;A0A087WX23;Q86TG7;A0A087WYS2 A0A087WZG9 PEG10 Retrotransposon-derived protein PEG10 0 0 ; ; 92.112 0.0074125 17920100 5262.6 4857.7 4542.2 4443.9 5162.4 4721.1 4088.1 5194.7 5446.9 5246.1 FALSE FALSE TRUE 4645.726006 5007.359979 4787.765071 4625.14145 4781.580037 4631.052883 4245.779386 5786.04365 5222.376477 5214.895964 0.890856891 0.960203236 0.918094072 0.88690963 0.91690804 0.888043197 0.814163775 1.109522355 1.001434451 1 12.34842276 -9.415986269 1.001692138 1.002895326 0.915597445 0.14901113 0.07221515 0.816987122 1.385659572 0.053607659 0.011854037 3.84E-10 9.415986269 -0.087297881 EPFPPSS(ph)PLQK ddPTM_HeLa_CUDC101_4h_R1 4 EPFPPSSPLQK 11 0 E7EPJ7;O75962-5;O75962-4;O75962 E7EPJ7 TRIO Triple functional domain protein 1 0 EPFPPS(0.284)S(0.716)PLQK;EPFPPS(0.232)S(0.768)PLQK;EPFPPS(0.176)S(0.824)PLQK;EPFPPS(0.185)S(0.815)PLQK ;;; 141.58 0.0013285 42506900 6849 5545.4 5658.9 6010.7 6501.2 7253.3 6210.9 5929.2 5026.06 6532.8 TRUE FALSE FALSE 6046.170602 5716.247201 5964.837251 6255.842326 6021.619428 7114.955387 6450.456494 6604.156161 4818.883679 6493.942615 0.931047741 0.880242949 0.918523246 0.963335018 0.927267114 1.095629544 0.993303587 1.016971746 0.742058248 1 12.66487892 -5.280186317 24.99493703 0.953635875 1.031101831 0.243299266 0.077862666 637.6435046 850157.3171 0.006723983 0.01505713 5.25E-06 5.280186317 0.077465955 RWDQTADQT(ph)PGAT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 RWDQTADQTPGATPK 15 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 RWDQT(0.028)ADQT(0.973)PGAT(0.999)PK;RWDQTADQT(1)PGAT(1)PK ; 110.37 0.0013867 41043000 12430.3 8783.8 9858.9 9684 11017.2 11765.8 11192.3 9005.5 8713.8 9775.2 TRUE FALSE FALSE 10973.23908 9054.418467 10391.90196 10078.95538 10204.48311 11541.38697 11623.99076 10030.64972 8354.613476 9717.056676 1.129276019 0.931806695 1.069449557 1.037243655 1.050161942 1.187745153 1.19624606 1.032272431 0.859788489 1 13.24630367 -5.279692946 23.41072019 1.050604873 1.144503693 0.231630912 0.087721547 344.2644891 441529.1541 0.010029662 0.022478744 5.25E-06 5.279692946 0.09389882 SAAS(ph)PVVSSMPER ddPTM_HeLa_CUDC101_4h_R1 1 SAASPVVSSMPER 13 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 S(0.225)AAS(0.771)PVVS(0.003)SMPER 170.26 4.88E-07 175800000 2025.3 2292.1 1710.9 1843.8 2295 1648.8 1819 1795.3 1788.2 2044 TRUE FALSE FALSE 1787.897404 2362.716884 1803.396429 1918.998134 2125.702422 1617.351887 1889.159439 1999.669695 1714.489639 2031.842197 0.879939105 1.162844677 0.88756717 0.944462191 1.046194643 0.796002706 0.929776654 0.984165846 0.843810431 1 10.98857264 -5.278178154 24.95793161 0.960711226 0.905961202 0.079204427 0.097101489 1718.543926 2562390.894 0.013082382 0.029321661 5.27E-06 5.278178154 -0.054750024 RREDEEEELRER ddPTM_HeLa_CUDC101_4h_R1 2 RREDEEEELRER 12 3 A0A0U1RQE4 A0A0U1RQE4 0 0 ; ; 102.52 0.0038256 7329700 545.4 329.13 756.29 739.74 399.34 623.16 614.68 376.46 566.84 869.69 FALSE FALSE TRUE 481.4690388 339.2701052 797.1773251 769.9097946 369.8814838 611.2742613 638.3884135 419.3146847 543.4746153 864.5170452 0.556922552 0.392438885 0.922107123 0.890566356 0.427847532 0.707070225 0.738433576 0.485027666 0.628645344 1 9.755750599 -9.334408636 1.040620329 1.00153617 0.642871218 0 0.204972235 0.454942637 0.87630583 0.120124787 0.031109245 4.63E-10 9.334408636 -0.358664952 RREDQMDGDGPRPR ddPTM_HeLa_CUDC101_4h_R1 1 RREDQMDGDGPRPR 14 3 Q15527 Q15527 SURF2 Surfeit locus protein 2 0 0 62.338 0.026925 3452400 329.92 370.49 466.07 278.38 222.31 327.3 378.9 198.39 283.94 320.23 FALSE FALSE TRUE 291.2472777 381.9043578 491.267154 289.7335397 205.9106342 321.0572978 393.5142999 220.9739157 272.235873 318.3252577 0.914936125 1.199729988 1.543286755 0.910180806 0.646856098 1.008582543 1.236201936 0.694176508 0.85521292 1 8.314357823 -3.428853248 15.18189116 0.995792692 0.990491089 0 0.254101747 0 0 0.032503124 0 0.000372518 3.428853248 -0.005301602 RREEEGLQLR ddPTM_HeLa_CUDC101_4h_R1 2 RREEEGLQLR 10 2 C9J352;C9JWD9;F2Z3G4;C9J4U1;C9JYI4;P52294 C9J352 KPNA1 "Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed" 0 0 ; ; 136.57 0.00076649 34157000 6666.8 5733.5 5794.8 6715.8 6372.4 5590.4 5061.7 6618 5566.6 4888.6 FALSE FALSE TRUE 5885.32781 5910.142339 6108.084416 6989.699352 5902.320748 5483.772434 5256.931465 7371.366369 5337.142392 4859.52239 1.211091819 1.216198191 1.256931016 1.438351095 1.214588652 1.128459135 1.081779451 1.516891122 1.098285379 1 12.24659881 -8.79908453 0.557915213 0.982512601 1.26092546 0.302777113 0.126045423 0.807753734 0.453883416 0.110883205 0.031849402 1.59E-09 8.79908453 0.278412859 RREEEMMIR ddPTM_HeLa_CUDC101_4h_R1 2 RREEEMMIR 9 2 P23246;P23246-2;H0Y9K7 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 0 ; ; 114.89 0.0037075 28963000 5523.5 4118.6 3838.9 4701.4 4636.5 4506.9 4261 4018.4 3540.8 3670.7 FALSE FALSE TRUE 4876.043703 4245.489184 4046.442546 4893.143413 4294.474632 4420.938392 4425.348197 4475.838413 3394.846725 3648.866513 1.33631737 1.163509043 1.108958777 1.341003678 1.176933883 1.211592251 1.212800792 1.226638025 0.930383919 1 11.83323266 -9.507643229 1.235999775 0.999028323 1.23154693 0.654231026 0.072923856 0.262324824 0.712484154 0.051846206 0.012311411 3.11E-10 9.507643229 0.232518607 GPSLNPVLDYDHGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 GPSLNPVLDYDHGSR 15 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 GPSLNPVLDYDHGS(1)R;GPSLNPVLDYDHGS(1)R ; 98.169 0.004255 21593000 6691.9 5509.4 5891.3 6220.5 6923.9 7636.5 8059.9 5711.6 5491.4 6842.2 TRUE FALSE FALSE 5907.485626 5679.138084 6209.801498 6474.198877 6413.137691 7490.846486 8370.773043 6361.785457 5265.042168 6801.50229 0.868556 0.834982897 0.913004397 0.951877777 0.942900174 1.101351755 1.230724138 0.935350043 0.774099889 1 12.73163772 -5.278079194 5.128632837 0.927688613 1.104399377 0.448143111 0.092895752 0.11984121 9.794447326 0.012005749 0.028788993 5.27E-06 5.278079194 0.176710763 GNLELRPGGAHPGTCS(ph)PSRPGS ddPTM_HeLa_CUDC101_4h_R1 1 GNLELRPGGAHPGTCSPSRPGS 22 2 Q5JTU8;B1AMJ5;A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8 Q5JTU8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 GNLELRPGGAHPGT(0.374)CS(0.602)PS(0.018)RPGS(0.006) 60.454 0.011535 51739000 1361.8 997.22 930.61 718.49 990.78 1230.6 941.1 1004.8 1014.8 862.12 TRUE FALSE FALSE 1202.171868 1027.943166 980.9215915 747.7931278 917.6921333 1207.128355 977.3985422 1119.18237 972.9695145 856.9920719 1.402780618 1.199478035 1.144609879 0.872578816 1.070829198 1.408564204 1.140498931 1.305942502 1.135330823 1 9.743138048 -5.277993899 24.83280565 1.160177036 1.270551613 0.17476648 0.146569745 1673.163805 2509847.058 0.027339478 0.06128026 5.27E-06 5.277993899 0.110374578 HS(ph)EKVHVNLLLMEAR ddPTM_HeLa_CUDC101_4h_R1 1 HSEKVHVNLLLMEAR 15 1 P58005-4;P58005 P58005-4 SESN3 Sestrin-3 1 0 HS(1)EKVHVNLLLMEAR 62.475 0.034918 10462000 2275.2 2146.1 1942.6 2095.1 2301 2603 2201.3 2178.7 1976.1 2372.9 TRUE FALSE FALSE 2008.504505 2212.218797 2047.622832 2180.547234 2131.259814 2553.352112 2286.204878 2426.714401 1894.644322 2358.785885 0.851499289 0.937863335 0.868083383 0.924436274 0.903541024 1.082485752 0.969229506 1.028798085 0.803228616 1 11.20382875 -5.277780959 24.56371565 0.922291195 1.021076957 0.464071268 0.059398668 519.7415704 781245.0345 0.008766148 0.019661752 5.27E-06 5.277780959 0.098785762 KAEDS(ph)DSEPEPEDNVR ddPTM_HeLa_CUDC101_4h_R1 3 KAEDSDSEPEPEDNVR 16 1 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 1 0 KAEDS(0.894)DS(0.106)EPEPEDNVR;KAEDS(0.726)DS(0.274)EPEPEDNVR;KAEDS(0.973)DS(0.027)EPEPEDNVR ;; 128.72 0.00026242 96737000 7899.5 7363.2 7769.3 7883.8 7861.6 6638.8 5736.9 5889.7 7976.4 8027.2 TRUE FALSE FALSE 6973.532585 7590.051464 8189.331859 8205.335441 7281.665431 6512.175951 5958.174155 6560.159641 7647.609416 7979.453857 0.873936075 0.951199368 1.026302302 1.0283079 0.912551856 0.816118003 0.746689468 0.822131409 0.958412637 1 12.96207429 -5.277463701 3.178223022 0.952999593 0.784907505 0.726651832 0.047931936 0.1355372 2.807295991 0.009013778 0.023591379 5.28E-06 5.277463701 -0.168092088 RRGEEGHDPKEPEQLR ddPTM_HeLa_CUDC101_4h_R1 1 RRGEEGHDPKEPEQLR 16 3 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 0 45.207 0.03224 3468600 646.9 755.54 783.13 698.15 712.57 716.45 791.32 604.16 864.28 894.32 FALSE FALSE TRUE 571.0713626 778.8172919 825.4683766 726.6235747 660.0051307 702.7849099 821.8414775 672.9351323 828.6540126 889.0005449 0.642374592 0.876059409 0.928535288 0.817348852 0.742412515 0.790533722 0.924455539 0.75695694 0.932118678 1 9.796040493 -9.652685928 1.503878034 0.999570896 0.790282606 0.320214579 0.085992858 0.337885181 1.378909841 0.069735165 0.015874191 2.22E-10 9.652685928 -0.20928829 (ac)SETAPAAPAAPAPAEKT(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 3 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 1 0 S(0.333)ET(0.333)APAAPAAPAPAEKT(0.333)PVK;S(0.19)ET(0.19)APAAPAAPAPAEKT(0.621)PVK;S(0.174)ET(0.174)APAAPAAPAPAEKT(0.652)PVK ;; 65.954 1.59E-05 1002804000 11662 9601.5 13728.1 11426.8 9442 7362.5 5631.4 4473.13 8121 11203.7 TRUE FALSE FALSE 10294.99804 9897.310834 14470.28261 11892.83429 8745.482471 7222.072579 5848.604984 4982.333038 7786.248943 11137.05989 0.92439101 0.888682554 1.299291083 1.067861214 0.785259535 0.648472097 0.525148023 0.447365201 0.699129664 1 13.4430808 -5.276966148 1.857819319 0.990117485 0.493401103 0.645513532 0.146985997 0.134703132 0.885476402 0.018123318 0.058393171 5.28E-06 5.276966148 -0.496716383 S(ph)KSEEAHAEDSVMDHHFR ddPTM_HeLa_CUDC101_4h_R1 4 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 S(0.559)KS(0.441)EEAHAEDSVMDHHFR;S(0.507)KS(0.493)EEAHAEDSVMDHHFR;S(0.655)KS(0.336)EEAHAEDS(0.01)VMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR ;;; 58.688 0.015796 149230000 12125.3 8250.5 6296.5 7195.1 11558.6 11548.4 10714.4 11193.1 9955.1 11405 TRUE FALSE FALSE 10703.99071 8504.688126 6636.907836 7488.547278 10705.94511 11328.13351 11127.658 12467.27726 9544.746564 11337.16255 0.944150767 0.7501602 0.585411721 0.660530996 0.944323155 0.999203589 0.981520548 1.099682324 0.841899066 1 13.46877199 -5.276220568 3.574229314 0.899541995 1.02618618 0.186951269 0.142194092 0.463006251 12.78581296 0.025162809 0.064167949 5.29E-06 5.276220568 0.126644186 ETNLDSLPLVDTHS(ph)KR ddPTM_HeLa_CUDC101_4h_R1 1 ETNLDSLPLVDTHSKR 16 1 P08670 P08670 VIM Vimentin 1 0 ETNLDSLPLVDT(0.368)HS(0.632)KR 76.156 0.032894 4578900 3677.2 3992.3 3671.8 3190.5 4206.8 4423.4 4280 3822.9 3694.3 4459.1 TRUE FALSE FALSE 3246.16419 4115.298031 3870.308615 3320.622381 3896.472745 4339.031015 4445.081034 4258.083483 3542.01939 4432.577075 0.732342413 0.928421088 0.873150889 0.749140359 0.87905358 0.978895785 1.002820923 0.960633828 0.799088054 1 12.11393 -5.275570826 5.20051258 0.865552067 0.98384678 0.36513168 0.076657766 0.221067786 19.27112357 0.015065186 0.036182917 5.30E-06 5.275570826 0.118294713 RRKEDEVEEWQHR ddPTM_HeLa_CUDC101_4h_R1 2 RRKEDEVEEWQHR 13 3 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ; ; 58.674 0.024857 78363000 3180.4 3915.98 3953.47 3818.6 4262.5 3835.42 4173.5 4769.9 3508.6 2256.32 FALSE FALSE TRUE 2807.598333 4036.626702 4167.206547 3974.339013 3948.063867 3762.265754 4334.473293 5312.886135 3363.974023 2242.899308 1.251771902 1.799736032 1.857955251 1.771964974 1.76025016 1.677411795 1.932531379 2.368758203 1.499832833 1 11.13114914 -7.341992731 1.412195637 1.081030678 1.890967138 0.598604541 0.22630197 0.126573924 0.485890487 0.038165215 0.043819753 4.55E-08 7.341992731 0.80993646 SQSGEDES(ph)MNQPGPIK ddPTM_HeLa_CUDC101_4h_R1 2 SQSGEDESMNQPGPIK 16 0 A0A0C4DG33;O43933-2;O43933 A0A0C4DG33 PEX1 Peroxisome biogenesis factor 1 1 0 S(0.002)QS(0.484)GEDES(0.514)MNQPGPIK;SQS(0.434)GEDES(0.566)MNQPGPIK ; 193.54 3.97E-16 22610500 9628.7 9052.1 8346.2 8283.4 9871.2 7614.5 8076.8 7354.3 8200.4 9187.6 TRUE FALSE FALSE 8500.038382 9330.984472 8797.420818 8621.232856 9143.021242 7469.266099 8388.324882 8191.483785 7862.376041 9132.951747 0.930700021 1.021683321 0.963261502 0.943970043 1.001102546 0.817837026 0.918468105 0.896915259 0.860880059 1 13.1568655 -5.275223638 24.99229451 0.970607067 0.881812924 0.355354234 0.049460472 433.4027279 785804.1681 0.005422959 0.012184865 5.31E-06 5.275223638 -0.088794144 RSMGKT(ph)SNKVEAR ddPTM_HeLa_CUDC101_4h_R1 1 RSMGKTSNKVEAR 13 3 A0A0A0MS01 A0A0A0MS01 TRGV10 1 0 RS(0.035)MGKT(0.483)S(0.483)NKVEAR 56.793 0.032222 81718000 1394.3 1296.4 1325.9 1082.7 1411.2 1661.5 1456 1396.1 1347.3 1353.4 TRUE FALSE FALSE 1230.862268 1336.340547 1397.582165 1126.857186 1307.098588 1629.809656 1512.158408 1555.026381 1291.763724 1345.349917 0.914901211 0.993303326 1.038824285 0.837594125 0.971567747 1.211439222 1.123988926 1.155852735 0.960169327 1 10.39376574 -5.27516942 20.99883796 0.958880941 1.159783115 0.744616374 0.054807816 34.84154737 53287.51033 0.008168407 0.01841037 5.31E-06 5.27516942 0.200902174 S(ph)LNDDGSSDPR ddPTM_HeLa_CUDC101_4h_R1 1 SLNDDGSSDPR 11 0 P54259 P54259 ATN1 Atrophin-1 1 0 S(0.797)LNDDGS(0.042)S(0.162)DPR 149.82 0.00069069 12101000 3893.2 2952.8 2442.6 3174 3057.7 2100.7 2080.2 1812.3 3565.4 3375.8 TRUE FALSE FALSE 3436.844998 3043.772268 2574.654344 3303.449439 2832.139563 2060.632648 2160.434011 2018.604906 3418.432703 3355.720591 1.024174959 0.90703984 0.767243361 0.98442327 0.843973592 0.614065621 0.643806286 0.601541413 1.018688121 1 11.71240688 -5.274919324 0.507756852 1.014450747 0.482034797 0.795656234 0.074073164 0.578184717 0.184081212 0.017691956 0.15333944 5.31E-06 5.274919324 -0.53241595 SSGDPEQIKEDS(ph)LSEESADAR ddPTM_HeLa_CUDC101_4h_R1 1 SSGDPEQIKEDSLSEESADAR 21 1 Q9BVS4-2;Q9BVS4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 0 SSGDPEQIKEDS(0.413)LS(0.413)EES(0.174)ADAR 57.316 0.01273 7208100 1777.4 1786.1 1722.4 1684.6 1822.7 1630.9 1497.9 1451.7 1488.5 1793.7 TRUE FALSE FALSE 1569.055866 1841.127624 1815.518154 1753.305269 1688.243052 1599.7933 1555.674505 1616.95566 1427.1434 1783.030993 0.879993602 1.032583074 1.018220189 0.983328544 0.946838871 0.897232469 0.872488763 0.906857854 0.800403025 1 10.80011606 -5.274731306 3.72572958 0.958371635 0.88879416 0.143534947 0.065702282 0.268727804 8.281118253 0.008266094 0.020930011 5.31E-06 5.274731306 -0.069577475 AAVGQES(ph)PGGLEAGNAK ddPTM_HeLa_CUDC101_4h_R1 2 AAVGQESPGGLEAGNAK 17 0 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 0 AAVGQES(1)PGGLEAGNAK;AAVGQES(1)PGGLEAGNAK ; 224.36 7.81E-33 395360000 10632.4 8791.7 8050.7 8328.4 9573.3 10207.4 9385 8090 9131.1 9139.1 TRUE FALSE FALSE 9386.08619 9062.561856 8485.945194 8668.06815 8867.096732 10012.71085 9746.982594 9010.932899 8754.712193 9084.740227 1.033170565 0.997558723 0.93408782 0.954134949 0.976042959 1.102146083 1.072896126 0.991875681 0.963672265 1 13.14922955 -5.274123345 24.87445179 1.001313943 1.057364982 0.350423231 0.04045592 719.9517901 1411891.463 0.006231557 0.014021215 5.32E-06 5.274123345 0.05605104 GS(ph)DGEDSASGGKTPAPGPEAASGEWELLR ddPTM_HeLa_CUDC101_4h_R1 1 GSDGEDSASGGKTPAPGPEAASGEWELLR 29 1 Q14674;Q14674-2 Q14674 ESPL1 Separin 1 0 GS(0.989)DGEDS(0.005)AS(0.004)GGKT(0.002)PAPGPEAASGEWELLR 54.703 0.0040441 6661200 981.57 813.83 690.1 815.27 904.99 948.43 1038.7 597.37 804.83 831.38 TRUE FALSE FALSE 866.5118526 838.9031377 727.4088934 848.5202345 838.2306907 930.3402779 1078.763007 665.3721861 771.6545667 826.4349148 1.048493762 1.015086757 0.880176866 1.026723604 1.014273085 1.125727219 1.305321191 0.805111418 0.933714867 1 9.690757395 -5.273964647 21.51086091 1.011608751 1.101380045 0.070851184 0.124516905 191.3086284 328555.7043 0.015890399 0.035868396 5.32E-06 5.273964647 0.089771294 AMT(ph)LSPQEEVAAGQMASSSR ddPTM_HeLa_CUDC101_4h_R1 1 AMTLSPQEEVAAGQMASSSR 20 0 A0A494BZT8;Q9Y6A5 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 AMT(1)LSPQEEVAAGQMASSSR 104.81 0.0046429 14530000 1774.7 1434.9 1586.1 1454.3 1682.7 1894.9 1860.4 1326 1825 1621.6 TRUE FALSE FALSE 1566.672356 1479.107568 1671.849364 1513.61264 1558.570573 1858.75794 1932.156251 1476.94648 1749.772728 1611.954651 0.971908456 0.91758634 1.037156574 0.938992073 0.966882395 1.153108084 1.198641817 0.916245677 1.08549749 1 10.65459544 -5.273539667 24.55049919 0.980191139 1.100262855 0.235566377 0.081806292 438.3136454 889302.4184 0.00978882 0.022049493 5.33E-06 5.273539667 0.120071717 ITAHSS(ph)PPLTK ddPTM_HeLa_CUDC101_4h_R1 3 ITAHSSPPLTK 11 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 IT(0.001)AHS(0.384)S(0.616)PPLTK;ITAHS(0.096)S(0.904)PPLTK;ITAHS(0.157)S(0.843)PPLTK ;; 135.1 0.0016763 87744200 17842 17664.2 16409.1 16102.8 17809.4 14408.1 15072.7 12944.3 17274.1 16096.2 TRUE FALSE FALSE 15750.58781 18208.41306 17296.22558 16759.54179 16495.63604 14133.2895 15654.05909 14417.82679 16562.05429 16000.45909 0.984383493 1.137993164 1.080983082 1.047441308 1.030947672 0.883305249 0.978350621 0.901088319 1.035098693 1 13.96582568 -5.273254975 24.75210675 1.016873388 0.926658318 0.499441107 0.051759456 554.2622357 1161105.988 0.008410104 0.01895459 5.33E-06 5.273254975 -0.09021507 MSS(ph)PEDDSDTKR ddPTM_HeLa_CUDC101_4h_R1 3 MSSPEDDSDTKR 12 1 Q15424-2;Q15424;Q15424-4;Q15424-3 Q15424-2 SAFB Scaffold attachment factor B1 1 0 MS(0.218)S(0.782)PEDDSDTKR;MSS(1)PEDDSDTKR;MS(0.089)S(0.906)PEDDS(0.004)DTKR ;; 196.02 7.99E-16 40834000 14289.9 12636.6 13886 13651.7 14567.7 12502.3 11706.9 11437 14688.8 14290.9 TRUE FALSE FALSE 12614.85958 13025.91867 14636.71916 14208.47533 13493.06979 12263.83946 12158.43905 12738.94185 14083.32145 14205.89709 0.888001617 0.916937423 1.030326988 1.000181491 0.949821733 0.863292151 0.855872669 0.896736177 0.991371496 1 13.79420232 -5.273135709 10.42235835 0.954303315 0.870343511 0.499320679 0.042561039 0.317924285 277.5379229 0.007669664 0.017694573 5.33E-06 5.273135709 -0.083959804 APSDSS(ph)LGTPSDGRPELR ddPTM_HeLa_CUDC101_4h_R1 2 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 APSDS(0.358)S(0.642)LGTPSDGRPELR;APS(0.011)DS(0.386)S(0.591)LGT(0.011)PS(0.001)DGRPELR ; 283.22 3.35E-103 182007000 4549.7 4345.2 4533.6 3982.8 4524.1 3718.6 3262.4 3616.95 4815.2 4285.2 TRUE FALSE FALSE 4016.391063 4479.070462 4778.700129 4145.235799 4190.366156 3647.673901 3388.231861 4028.688968 4616.715418 4259.71144 0.942878671 1.051496216 1.121836584 0.973125964 0.983720662 0.856319484 0.795413471 0.945765699 1.083809428 1 12.05653999 -5.272151155 6.48433586 0.990688848 0.858409605 0.502329336 0.066244555 0.099914753 21.54704734 0.009092744 0.021503786 5.34E-06 5.272151155 -0.132279243 NTFTAWS(ph)DEESDYEIDDRDVNK ddPTM_HeLa_CUDC101_4h_R1 6 NTFTAWSDEESDYEIDDRDVNK 22 1 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 NT(0.001)FT(0.02)AWS(0.858)DEES(0.069)DY(0.052)EIDDRDVNK;NTFT(0.018)AWS(0.961)DEES(0.019)DY(0.002)EIDDRDVNK;NT(0.002)FT(0.168)AWS(0.745)DEES(0.03)DY(0.055)EIDDRDVNK;NT(0.05)FT(0.121)AWS(0.777)DEES(0.051)DY(0.002)EIDDRDVNK;NT(0.005)FT(0.048)AWS(0.721)DEES(0.172)DY(0.054)EIDDRDVNK;NT(0.002)FT(0.122)AWS(0.84)DEESDY(0.035)EIDDRDVNK ;;;;; 114.71 4.47E-06 1040353000 8282.44 8273.9 7845.1 7533.8 8588.77 6956.17 6147.69 7257.27 9504.45 8597.04 TRUE FALSE FALSE 7311.584939 8528.809052 8269.229836 7841.060928 7955.193548 6823.492647 6384.808463 8083.408282 9112.672548 8545.904424 0.855565962 0.997999583 0.967624891 0.917522656 0.930877898 0.798451786 0.747119105 0.94588096 1.066320438 1 13.06101747 -5.272049161 21.75776071 0.937027125 0.822147477 0.371126745 0.073410548 98.7658723 202543.8183 0.010029944 0.022718367 5.35E-06 5.272049161 -0.114879648 TET(ph)QEKNTLPTK ddPTM_HeLa_CUDC101_4h_R1 1 TETQEKNTLPTK 12 1 P63313;CON__P21752 P63313 TMSB10 Thymosin beta-10 1 0 T(0.062)ET(0.893)QEKNT(0.045)LPTK 168.67 1.84E-05 12393000 1591.7 1171.8 1021.4 1242.1 1556.4 1828.7 1467.9 1736.2 1039.2 1615 TRUE FALSE FALSE 1405.123339 1207.901769 1076.619974 1292.758207 1441.587473 1793.820594 1524.517395 1933.84199 996.3637361 1605.393908 0.875251446 0.752402113 0.670626672 0.805259195 0.897964958 1.117370999 0.949622013 1.204590338 0.620635055 1 10.64871161 -5.271562472 22.46030471 0.89156869 1.076437198 0.376876213 0.139743511 163.3800849 362496.9154 0.018788317 0.042568881 5.35E-06 5.271562472 0.184868508 KVAS(ph)PSPSGSVLFTDEGVPK ddPTM_HeLa_CUDC101_4h_R1 2 KVASPSPSGSVLFTDEGVPK 20 1 P56181-2 P56181-2 1 0 KVAS(0.998)PS(0.002)PSGSVLFTDEGVPK;KVAS(0.943)PS(0.056)PSGSVLFTDEGVPK ; 89.297 0.0011001 93733000 4431.9 4421.4 3626.6 4228.7 4745.9 3781.3 3738.4 3966.7 3360.4 4311.4 TRUE FALSE FALSE 3912.3994 4557.618093 3822.664966 4401.164664 4395.804412 3709.178003 3882.59134 4418.253094 3221.88289 4285.755601 0.912884393 1.06343397 0.89194656 1.026928522 1.025677808 0.865466524 0.905929246 1.030915784 0.751765427 1 12.06533387 -5.270739509 24.98381091 0.969965165 0.931286388 0 0.093725521 1419.296253 3812791.171 0.009189172 0.020811406 5.36E-06 5.270739509 -0.038678777 SQPAPVS(ph)PQQK ddPTM_HeLa_CUDC101_4h_R1 2 SQPAPVSPQQK 11 0 Q13118-2;Q13118 Q13118-2 KLF10 Krueppel-like factor 10 1 0 SQPAPVS(1)PQQK;SQPAPVS(1)PQQK ; 175.29 4.63E-07 19341800 8480.9 7738.2 9018.8 8603.4 8344.5 5926.7 5666.8 5096.9 7756.8 7666.9 TRUE FALSE FALSE 7486.781758 7976.60477 9506.383608 8954.283839 7728.94286 5813.658072 5885.370374 5677.110494 7437.061421 7621.296938 0.982350093 1.04662039 1.247344604 1.174902895 1.014124357 0.762817421 0.772226882 0.74490084 0.975826225 1 12.89582081 -5.270230464 5.881733911 1.031137944 0.759878784 0.713869863 0.086330318 0.082367587 11.98192281 0.014446568 0.034537155 5.37E-06 5.270230464 -0.27125916 IYEFPET(ph)DDEEENKLVK ddPTM_HeLa_CUDC101_4h_R1 2 IYEFPETDDEEENKLVK 17 1 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181 G3V1Q4 7-Sep Septin-7 1 0 IYEFPET(1)DDEEENKLVK;IYEFPET(1)DDEEENKLVK ; 100.02 0.0038109 54263000 3542.5 3453.49 2884.95 3005.07 3725.8 2571.3 2840.97 2646.07 3542.7 3388.2 TRUE FALSE FALSE 3127.25352 3559.887934 3040.919123 3127.629744 3450.955157 2522.256737 2950.547165 2947.287913 3396.668407 3368.046836 0.928506542 1.056959154 0.90287317 0.928618246 1.024616143 0.748878166 0.876041014 0.875073316 1.008497973 1 11.71769649 -5.270193936 24.99787886 0.968091701 0.837601848 0.577000924 0.056458322 348.9106925 996284.6157 0.0077957 0.017681728 5.37E-06 5.270193936 -0.130489853 SKESVPEFPLS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 3 SKESVPEFPLSPPK 14 1 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK ;; 112.01 0.0017343 5760927000 22080 45995 21351.1 24632.3 21477.5 19236.6 16167.1 10630.8 24345.2 29820.7 TRUE FALSE FALSE 19491.81587 47412.05143 22505.40505 25636.91166 19893.14761 18869.69391 16790.67046 11840.9673 23341.68055 29643.32515 0.657544853 1.599417447 0.759206497 0.864846016 0.671083541 0.636557937 0.566423314 0.399448012 0.787417755 1 14.85541967 -5.269554476 1.132049774 0.895282514 0.458126502 0.365444145 0.247249164 0.581809623 1.297847943 0.041020259 0.194548647 5.38E-06 5.269554476 -0.437156012 AFS(ph)DPFVEAEK ddPTM_HeLa_CUDC101_4h_R1 3 AFSDPFVEAEK 11 0 A0A087WYC1;P34932;A0A087WTS8;P34932-2 A0A087WYC1 HSPA4 Heat shock 70 kDa protein 4 1 0 AFS(1)DPFVEAEK;AFS(1)DPFVEAEK;AFS(1)DPFVEAEK ;; 162.93 8.28E-05 21918700 9298.6 8830.6 7312.7 7668.7 9073.3 9255.7 8389.3 8172 8750.5 8806.9 TRUE FALSE FALSE 8208.632204 9102.660319 7708.046682 7981.462733 8403.980736 9079.162944 8712.878111 9102.267448 8389.800686 8754.516167 0.937645445 1.039767378 0.880465183 0.911696612 0.959959474 1.037083349 0.99524382 1.039722501 0.958339733 1 13.09581173 -5.269462913 24.16127855 0.963177174 1.021139284 0.335765569 0.043207928 402.0723913 1210762.78 0.006604658 0.015031856 5.38E-06 5.269462913 0.05796211 SGSSQELDVKPSAS(ph)PQER ddPTM_HeLa_CUDC101_4h_R1 2 SGSSQELDVKPSASPQER 18 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SGSSQELDVKPS(0.116)AS(0.884)PQER;SGSSQELDVKPSAS(1)PQER ; 204.63 6.93E-17 51970000 4344.6 3297.6 3464.2 4031 4099.2 2913.8 3072.2 2750.94 3764.2 3687.2 TRUE FALSE FALSE 3835.332574 3399.195147 3651.485131 4195.401603 3796.810183 2858.22412 3190.695783 3064.09589 3609.038083 3665.26837 1.046398841 0.927406892 0.996239501 1.144636949 1.035888726 0.779813053 0.870521736 0.83598132 0.984658617 1 11.83970312 -5.26897107 24.98803321 1.023384208 0.832947005 0.70635378 0.056238356 223.7459491 742327.1256 0.008025484 0.018277213 5.38E-06 5.26897107 -0.190437204 MLTTVGPASSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 MLTTVGPASSSPK 13 0 A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-4;Q8IVL1-8;Q8IVL1-9;Q8IVL1-10;Q8IVL1-13;Q8IVL1-12;Q8IVL1-11;Q8IVL1-3;Q8IVL1-2;Q8IVL1 A0A0A0MTL4 NAV2 Neuron navigator 2 1 0 MLTTVGPASS(0.043)S(0.957)PK 231.52 3.96E-43 42653000 2888.2 2678.4 2900.9 2580.4 3053.4 2152.4 2020.4 2423.6 2936.3 2882 TRUE FALSE FALSE 2549.649574 2760.918329 3057.731429 2685.639865 2828.156765 2111.346556 2098.327505 2699.492827 2815.264471 2864.857736 0.889974236 0.963719173 1.067324004 0.937442663 0.987189252 0.736981292 0.732436895 0.942278143 0.9826891 1 11.48424778 -5.268254535 24.9645423 0.958750913 0.796752587 0.549427595 0.06997653 316.0888113 1157864.029 0.010514936 0.024006502 5.39E-06 5.268254535 -0.161998325 S(ph)PSQESIGAR ddPTM_HeLa_CUDC101_4h_R1 2 SPSQESIGAR 10 0 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 S(0.999)PS(0.001)QESIGAR;S(0.995)PS(0.005)QESIGAR ; 148.13 0.00061321 50801000 1694.76 1534.08 1598.63 1558.25 1638.85 1288.85 1181.38 1337.04 1573.55 1426.7 TRUE FALSE FALSE 1496.102802 1581.343186 1685.056773 1621.80217 1517.955301 1264.267334 1226.946222 1489.243229 1508.687603 1418.213925 1.054920401 1.115024439 1.188154159 1.143552564 1.070328865 0.891450374 0.865134801 1.050083632 1.063794098 1 10.46985945 -5.268210325 24.33286376 1.05743228 0.928514121 0.453120627 0.071765696 312.0114673 1121283.671 0.011841013 0.027064932 5.39E-06 5.268210325 -0.128918159 ALSYAS(ph)LDKEDLLSPINQNTLQR ddPTM_HeLa_CUDC101_4h_R1 1 ALSYASLDKEDLLSPINQNTLQR 23 1 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 ALS(0.005)Y(0.011)AS(0.984)LDKEDLLSPINQNTLQR 99.846 4.72E-05 65959000 1825.2 1612.6 1478.1 1678 1714.8 1307.6 1444.8 1131 1803.4 1405.2 TRUE FALSE FALSE 1611.252823 1662.282295 1558.010557 1746.436093 1588.30262 1282.659709 1500.52642 1259.748468 1729.063089 1396.841808 1.153496991 1.190029025 1.115380817 1.250274786 1.137066926 0.918256957 1.074227884 0.901854785 1.237837441 1 10.44795293 -5.268090827 24.96357633 1.103786254 0.975724675 0.417714025 0.089338343 515.9018615 1936236.934 0.013652128 0.031219449 5.39E-06 5.268090827 -0.128061578 AS(ph)SPAESSPEDSGYMR ddPTM_HeLa_CUDC101_4h_R1 1 ASSPAESSPEDSGYMR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 AS(0.625)S(0.373)PAES(0.002)SPEDSGYMR 194.77 3.57E-16 10017000 2574.9 2561.5 2347.1 2411 2600.8 2351.4 2270 2068.8 2641.1 2450.7 TRUE FALSE FALSE 2273.074125 2640.416779 2473.991326 2509.331001 2408.944166 2306.550963 2357.55466 2304.30383 2532.23274 2436.123127 0.933070295 1.08386015 1.015544452 1.030050974 0.988843355 0.946812145 0.967748565 0.945889723 1.03945187 1 11.25037134 -5.267942607 23.30250025 0.986146495 0.954909987 0.114272683 0.043022448 409.8953331 1468755.533 0.006838919 0.01567595 5.40E-06 5.267942607 -0.031236508 SRLT(ph)PVSPESSSTEEK ddPTM_HeLa_CUDC101_4h_R1 7 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 S(0.045)RLT(0.955)PVSPESSSTEEK;S(0.005)RLT(0.995)PVSPESSSTEEK;S(0.035)RLT(0.965)PVSPESSSTEEK;S(0.051)RLT(0.949)PVSPESSSTEEK;SRLT(0.988)PVS(0.011)PES(0.001)SSTEEK;SRLT(1)PVSPESSSTEEK;S(0.13)RLT(0.545)PVS(0.325)PESSSTEEK ;;;;;; 208.4 3.18E-22 3592116000 32540.5 27945.7 26926 25990.1 26982.9 21072.7 19088.4 15531.8 27107.3 28203.4 TRUE FALSE FALSE 28726.15192 28806.67389 28381.70101 27050.08862 24992.42522 20670.77336 19824.64598 17299.87733 25989.92562 28035.64492 1.02462961 1.027501738 1.012343432 0.964846312 0.891451768 0.737303294 0.70712288 0.617067215 0.927031488 1 14.77497464 -5.267474798 1.144353022 1.01452126 0.630592562 0.94847026 0.032288472 0.043960085 0.100488231 0.002755609 0.012970657 5.40E-06 5.267474798 -0.383928698 QAQIEVVPS(ph)ASALIIK ddPTM_HeLa_CUDC101_4h_R1 1 QAQIEVVPSASALIIK 16 0 P30050 P30050 RPL12 60S ribosomal protein L12 1 0 QAQIEVVPS(0.631)AS(0.369)ALIIK 144.33 0.00026739 6688500 2064.2 1672.1 1508.6 1533.9 1912.3 1340.7 1244.7 1514.3 1561.3 1677.8 TRUE FALSE FALSE 1822.237605 1723.615419 1590.159479 1596.459072 1771.233439 1315.128381 1292.708496 1686.681791 1496.942553 1667.820371 1.09258625 1.033453871 0.953435698 0.957212839 1.06200492 0.78853119 0.775088564 1.011309024 0.897544232 1 10.7037482 -5.267397719 24.98349361 1.031326481 0.849987487 0.328583926 0.083993255 264.1179184 1107456.092 0.010758691 0.024658138 5.40E-06 5.267397719 -0.181338993 SAS(ph)WGSTDQLK ddPTM_HeLa_CUDC101_4h_R1 2 SASWGSTDQLK 11 0 Q6P1L5;Q6P1L5-2 Q6P1L5 FAM117B Protein FAM117B 1 0 SAS(0.995)WGS(0.002)T(0.002)DQLK;S(0.046)AS(0.944)WGS(0.005)T(0.005)DQLK ; 125.28 0.0030995 97271000 4043.1 2825 2477.5 2474.5 3665.6 4097.8 3737.3 3298.9 4214.3 3990.3 TRUE FALSE FALSE 3569.173947 2912.034902 2611.441144 2575.420806 3395.195991 4019.641292 3881.448913 3674.433441 4040.58477 3966.565518 0.899814696 0.734145166 0.658363295 0.649282306 0.855953589 1.013380788 0.978541485 0.92635138 1.018660792 1 11.95367466 -5.26644257 24.64456412 0.883301699 0.973336245 0.122892229 0.128222249 789.2661317 3887752.734 0.022182216 0.051125002 5.41E-06 5.26644257 0.090034546 AQPFGFIDS(ph)DTDAEEERIPATPVVIPMKK ddPTM_HeLa_CUDC101_4h_R1 2 AQPFGFIDSDTDAEEERIPATPVVIPMKK 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AQPFGFIDS(0.861)DT(0.111)DAEEERIPAT(0.029)PVVIPMKK;AQPFGFIDS(0.735)DT(0.205)DAEEERIPAT(0.06)PVVIPMKK ; 56.416 0.001267 166567000 5768.3 5934.7 5702.5 5607.4 5609.9 4716.2 4490.3 3937.1 5819.4 5090.9 TRUE FALSE FALSE 5092.148618 6117.541073 6010.794399 5836.094009 5196.068853 4626.246343 4663.492375 4385.28355 5579.521869 5060.6191 1.006230368 1.208852307 1.187758707 1.153237162 1.026765451 0.914166083 0.921526059 0.866550804 1.102537409 1 12.30509818 -5.26622388 4.110439628 1.046506679 0.900148834 0.489682026 0.081429017 0.202523299 8.289172522 0.014090266 0.035354803 5.42E-06 5.26622388 -0.146357846 SPGRGDCS(ph)TNSPVGVSK ddPTM_HeLa_CUDC101_4h_R1 1 SPGRGDCSTNSPVGVSK 17 1 Q96L73-2;Q96L73-3;Q96L73 Q96L73-2 NSD1 "Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific" 1 0 S(0.022)PGRGDCS(0.472)T(0.472)NS(0.034)PVGVSK 98.508 0.0016312 0 1063 970.26 1019.9 911.74 1042.9 790.47 866.27 637.53 1050.6 942.34 TRUE FALSE FALSE 938.3967514 1000.152561 1075.038879 948.9246981 965.9673447 775.3931018 899.6823241 710.1038382 1007.293823 936.7349198 1.001774068 1.067700733 1.147644714 1.01301305 1.031206721 0.827761499 0.960444951 0.758062738 1.075324302 1 9.871497037 -5.2660859 24.59402412 1.019980529 0.859925248 0.637667821 0.066376395 168.6205875 892511.7197 0.009185638 0.021214555 5.42E-06 5.2660859 -0.160055282 S(ph)PSGLRPR ddPTM_HeLa_CUDC101_4h_R1 1 SPSGLRPR 8 1 P49815;X5D2U8;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4;H3BQK4 P49815 TSC2 Tuberin 1 0 S(1)PSGLRPR 74.255 0.031344 37266000 947.94 605.02 747.46 787.66 797.67 593.51 589.42 470.21 688.52 678.66 TRUE FALSE FALSE 836.8239102 623.6599491 787.8699485 819.7841794 738.8274733 582.1897856 612.1541268 523.7368057 660.1389142 674.6233001 1.240431379 0.92445658 1.167866494 1.215173237 1.095170406 0.862984995 0.9074014 0.776339634 0.978529668 1 9.397938337 -5.265893566 4.902723842 1.11293346 0.852068642 0.52762018 0.102416395 0.110849542 8.068913612 0.015938288 0.039049185 5.42E-06 5.265893566 -0.260864818 ASES(ph)SSEEKDDYEIFVK ddPTM_HeLa_CUDC101_4h_R1 1 ASESSSEEKDDYEIFVK 17 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 AS(0.028)ES(0.518)S(0.366)S(0.088)EEKDDY(0.001)EIFVK 58.024 0.031501 10935000 2627.3 1830.5 1693.4 1790.8 2105.2 1464.1 1238.7 1595 2229.8 1707.8 TRUE FALSE FALSE 2319.331877 1886.895535 1784.950326 1863.836564 1949.90359 1436.174732 1286.477074 1776.568353 2137.8867 1697.64193 1.366207936 1.111480285 1.051429218 1.097897343 1.148595329 0.845982128 0.757802368 1.046491797 1.259327225 1 10.72931648 -5.265621556 23.22340075 1.155399171 0.8708631 0.510902282 0.118206974 95.68862813 531360.4282 0.021833948 0.050592243 5.42E-06 5.265621556 -0.284536071 NAEEES(ph)ESEAEEGD ddPTM_HeLa_CUDC101_4h_R1 1 NAEEESESEAEEGD 14 0 H0Y503;Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3 H0Y503 BZW1 Basic leucine zipper and W2 domain-containing protein 1 1 0 NAEEES(0.922)ES(0.078)EAEEGD 219.97 1.33E-32 6758700 1354.7 1365.1 1110.9 1138.9 1391.1 810.12 983.31 665.17 1386.9 1306.3 TRUE FALSE FALSE 1195.90412 1407.157113 1170.958614 1185.349265 1288.481324 794.6683108 1021.236596 740.8902641 1329.731395 1298.53007 0.920967598 1.083653853 0.901757026 0.912839289 0.992261446 0.611975286 0.78645587 0.57056073 1.024028189 1 10.34266371 -5.264922252 24.99946606 0.964369268 0.669343145 0.795158801 0.074201954 93.83393404 673526.5571 0.009691117 0.022519867 5.43E-06 5.264922252 -0.295026123 RKADT(ph)TTPTPTAILAPGSPAS(ph)PPGSLEPK ddPTM_HeLa_CUDC101_4h_R1 1 RKADTTTPTPTAILAPGSPASPPGSLEPK 29 2 P25440-2;P25440;A0A0G2JK44;A0A140T9E9;H0Y6K2;P25440-3;P25440-4;A0A0G2JHL0;A0A140T9V2;A0A140T9F7;U3KQA6;E9PIQ3;H0YDJ7;U3KPW0 P25440-2 BRD2 Bromodomain-containing protein 2 2 0 RKADT(0.601)T(0.159)T(0.142)PT(0.034)PT(0.035)AILAPGS(0.408)PAS(0.546)PPGS(0.075)LEPK 56.265 0.0038967 18726000 1142.8 1127.9 1118.8 947.49 1155.4 731.49 736.58 802.16 1063.6 966.78 TRUE FALSE FALSE 1008.842716 1162.649262 1179.285712 986.1327376 1070.168444 717.538047 764.9901373 893.474652 1019.757958 961.0295496 1.049752026 1.209795539 1.227106609 1.026121141 1.113564556 0.746634739 0.796011046 0.929705702 1.061109888 1 9.908436981 -5.264440327 24.98065419 1.059390834 0.821306547 0.658362626 0.087396276 143.6099755 1195452.482 0.014041842 0.03270843 5.44E-06 5.264440327 -0.238084287 KVDAQS(ph)SAGEEDVLLSK ddPTM_HeLa_CUDC101_4h_R1 1 KVDAQSSAGEEDVLLSK 17 1 K7EQL6;Q8NFA0 K7EQL6 USP32 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 32 1 0 KVDAQS(0.864)S(0.136)AGEEDVLLSK 57.499 0.03068 9508600 3593.3 2638.6 2535.3 2639.8 3202.5 3617.6 3381.1 2817.4 3334 3252 TRUE FALSE FALSE 3172.098821 2719.892138 2672.365987 2747.462454 2966.257955 3548.600307 3511.51016 3138.121428 3196.571109 3232.656959 0.98126676 0.841379761 0.826677875 0.849908446 0.917591317 1.097734882 1.086261303 0.970756089 0.988837093 1 11.65850471 -5.264335422 24.98899545 0.951681537 1.055051813 0.355788493 0.073351515 293.5025558 2532542.293 0.012627303 0.029442144 5.44E-06 5.264335422 0.103370276 ETDKSPT(ph)STEPR ddPTM_HeLa_CUDC101_4h_R1 1 ETDKSPTSTEPR 12 1 Q6IQ19-2;Q6IQ19 Q6IQ19-2 CCSAP "Centriole, cilia and spindle-associated protein" 1 0 ET(0.062)DKS(0.371)PT(0.545)S(0.022)TEPR 137.81 9.87E-06 0 1466.7 1622.7 1488.2 1639 1632 1319.9 1223.6 1274.8 1776 1600 TRUE FALSE FALSE 1294.775649 1672.693464 1568.656594 1705.845504 1511.610611 1294.725107 1270.794662 1419.918079 1702.792528 1590.483129 0.814076947 1.051688907 0.986276789 1.072532914 0.950409711 0.814045168 0.798999146 0.892758969 1.070613386 1 10.63524935 -5.264164554 24.66118397 0.941280936 0.831640896 0.314760173 0.085434854 235.81381 2133988.504 0.013790298 0.032214321 5.44E-06 5.264164554 -0.10964004 VDSLEFSLES(ph)QK ddPTM_HeLa_CUDC101_4h_R1 1 VDSLEFSLESQK 12 0 P49454 P49454 CENPF Centromere protein F 1 0 VDS(0.002)LEFS(0.408)LES(0.59)QK 102.33 0.0096877 3014100 989.43 1022.6 1231.2 827.42 1127.5 856.17 802.22 745.73 1406.7 1152.5 TRUE FALSE FALSE 873.4505153 1054.105094 1297.762396 861.165764 1044.326571 839.8399837 833.1618941 830.6208889 1348.715231 1145.644879 0.762409479 0.920097592 1.132778944 0.751686478 0.911562205 0.733071826 0.727242717 0.725024747 1.177254187 1 10.1619442 -5.26401831 1.868460448 0.900323063 0.717428007 0.312513419 0.135819415 0.364340068 2.421248267 0.018051377 0.0586598 5.44E-06 5.26401831 -0.182895056 GDLS(ph)DVEEEEEEEMDVDEATGAVK ddPTM_HeLa_CUDC101_4h_R1 1 GDLSDVEEEEEEEMDVDEATGAVK 24 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 GDLS(1)DVEEEEEEEMDVDEATGAVK 173.24 2.28E-11 7739200 3645.6 2747.3 2567.9 2680.5 3011.5 2531.6 2501.8 2191.1 2657 2360.1 TRUE FALSE FALSE 3218.268294 2831.941057 2706.728441 2789.822376 2789.347645 2483.313948 2598.295264 2440.525967 2547.477335 2346.06202 1.371774602 1.207104089 1.153732688 1.189151161 1.188948809 1.058503111 1.107513459 1.040264898 1.085852511 1 11.19602544 -5.263799322 23.86665875 1.181898868 1.072635783 0.203468689 0.09075235 188.137093 1902710.731 0.019493194 0.045678082 5.45E-06 5.263799322 -0.109263085 AS(ph)DSSSPSCSSGPR ddPTM_HeLa_CUDC101_4h_R1 2 ASDSSSPSCSSGPR 14 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 0 AS(0.941)DS(0.007)S(0.026)S(0.026)PS(0.001)CSSGPR;AS(0.994)DS(0.003)S(0.003)SPSCSSGPR ; 240.18 7.65E-44 29136000 6293.4 5721.3 5826.6 5295.3 5872.9 4980 4487.7 4262.1 6223.4 5546.2 TRUE FALSE FALSE 5555.697192 5897.566472 6141.603621 5511.265222 5439.667867 4885.014797 4660.792092 4747.280236 5966.868818 5513.210956 1.00770626 1.069715365 1.113979434 0.999647078 0.986660571 0.886056209 0.845386133 0.861073569 1.082285598 1 12.42867709 -5.263721747 2.257155767 1.017981202 0.852534618 0.785578588 0.041124478 0.116139845 1.143058527 0.006009204 0.017793773 5.45E-06 5.263721747 -0.165446584 SVSTPS(ph)EAGSQDSGDGAVGSR ddPTM_HeLa_CUDC101_4h_R1 1 SVSTPSEAGSQDSGDGAVGSR 21 0 E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E9PGG1;E7ETL8;E7ESD3;E7EMU4;Q13409;Q13409-7;Q13409-5;E7ET01;E7ERR6;E7EUM4;E7ERH4 E7EQL5 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 0 SVST(0.422)PS(0.422)EAGS(0.021)QDS(0.136)GDGAVGSR 340.33 6.05E-249 0 1113.9 1199.7 1128 834.02 1023.7 1427.4 1177.1 1062.4 1153.3 1166 TRUE FALSE FALSE 983.3303306 1236.661335 1188.983092 868.0349405 948.1836905 1400.174723 1222.501141 1183.339322 1105.760486 1159.06458 0.848382694 1.066947741 1.025812636 0.748909901 0.818059413 1.208021319 1.054730825 1.02094339 0.954011109 1 10.17874524 -5.263676637 24.99930985 0.924841305 1.09058174 0.369824284 0.102477398 179.5107068 2005878.614 0.015784556 0.036955179 5.45E-06 5.263676637 0.165740435 EKENQINS(ph)FGK ddPTM_HeLa_CUDC101_4h_R1 1 EKENQINSFGK 11 1 F5H5B4;Q13043-2;Q13043 F5H5B4 STK4 Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit 1 0 EKENQINS(1)FGK 76.759 0.025962 10483000 5733.1 5204.2 6007.2 6164.8 6168.9 4992.8 4960 4802.3 5172.7 5546.3 TRUE FALSE FALSE 5061.074709 5364.535234 6331.967403 6416.227191 5713.832537 4897.570659 5151.308861 5348.97442 4959.479117 5513.310361 0.917973845 0.973015282 1.148487386 1.163770361 1.036370558 0.888317606 0.934340446 0.970192873 0.899546514 1 12.4287031 -5.262654507 24.99833674 0.995648711 0.931289323 0.147115235 0.085118981 222.0043647 4567258.088 0.013787613 0.032469629 5.46E-06 5.262654507 -0.064359388 HERPAGPGT(ph)PPPDSGPLAK ddPTM_HeLa_CUDC101_4h_R1 2 HERPAGPGTPPPDSGPLAK 19 1 H0YME5;Q9P2K8-2;Q9P2K8 H0YME5 EIF2AK4 Eukaryotic translation initiation factor 2-alpha kinase 4 1 0 HERPAGPGT(1)PPPDSGPLAK;HERPAGPGT(1)PPPDSGPLAK ; 94.671 0.0028496 125057000 3728.9 2819.9 3110.2 3202.8 3342.3 4162.8 3655.5 3725 2893.1 3080.1 TRUE FALSE FALSE 3291.803995 2906.777777 3278.34682 3333.424028 3095.745188 4083.401526 3796.49386 4149.038943 2773.845193 3061.779428 1.075127739 0.949375304 1.070732526 1.088721152 1.01109347 1.333669398 1.239963214 1.355107068 0.905958531 1 11.58015464 -5.262364975 24.99980416 1.035017221 1.302618236 0.82101587 0.062612057 20.41157389 551315.0632 0.006882833 0.016269745 5.47E-06 5.262364975 0.267601015 LSSSSPGATVS(ph)PSSSDAEYDKLPDADLAR ddPTM_HeLa_CUDC101_4h_R1 2 LSSSSPGATVSPSSSDAEYDKLPDADLAR 29 1 Q8NI08-2;Q8NI08;Q8NI08-7;Q8NI08-4;Q8NI08-3 Q8NI08-2 NCOA7 Nuclear receptor coactivator 7 1 0 LSS(0.001)S(0.003)S(0.013)PGAT(0.013)VS(0.834)PS(0.096)S(0.02)S(0.02)DAEYDKLPDADLAR;LSSS(0.001)S(0.005)PGAT(0.188)VS(0.757)PS(0.037)S(0.008)S(0.003)DAEYDKLPDADLAR ; 127.4 3.17E-14 236380000 2200.29 1925.8 2093.29 1890.36 2217.69 1878.25 1860.54 1716.43 1748.41 2023.61 TRUE FALSE FALSE 1942.375342 1985.131615 2206.459589 1967.457052 2054.095427 1842.425511 1932.301651 1911.821453 1676.3398 2011.573478 0.965599996 0.986855135 1.096882422 0.978068698 1.021138651 0.915912608 0.96059213 0.950410947 0.833347535 1 10.97410872 -5.26223889 24.99981476 0.994066171 0.944133919 0.063071381 0.062765237 76.88779233 2404256.805 0.005494826 0.013016519 5.47E-06 5.26223889 -0.049932252 MANS(ph)SPVLSK ddPTM_HeLa_CUDC101_4h_R1 4 MANSSPVLSK 10 0 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 1 0 MANS(0.911)S(0.088)PVLSK;MANS(0.92)S(0.08)PVLSK;MANS(0.497)S(0.497)PVLS(0.006)K;MANS(0.5)S(0.5)PVLSK ;;; 176.87 1.30E-07 131413000 18299.1 16097.1 16430.2 15038.4 17413.7 15494.1 14639.6 13955.5 17131.2 15704.4 TRUE FALSE FALSE 16154.10724 16593.03257 17318.46631 15651.73095 16129.12604 15198.57586 15204.25428 15544.13771 16425.04469 15610.98953 1.034790729 1.062907162 1.109376589 1.002609791 1.033190498 0.973581837 0.973945581 0.995717644 1.052146288 1 13.93027437 -5.262186037 24.89362852 1.027411131 0.980368075 0.378328325 0.032198416 66.1259132 2204722.395 0.005060056 0.011986921 5.47E-06 5.262186037 -0.047043056 GAGQQQS(ph)QEMMEVDRR ddPTM_HeLa_CUDC101_4h_R1 1 GAGQQQSQEMMEVDRR 16 1 B5MBZ8;Q15435-3;Q15435;C9JRC4 B5MBZ8 PPP1R7 Protein phosphatase 1 regulatory subunit 7 1 0 GAGQQQS(1)QEMMEVDRR 69.024 0.018143 13643000 1069.3 1093.5 743.82 955.13 925.97 1483.2 985.89 1364.4 1216.5 1117.5 TRUE FALSE FALSE 943.958275 1127.189439 784.0331591 994.0843298 857.6630379 1454.910431 1023.916108 1519.717781 1166.355355 1110.85306 0.849759801 1.014706156 0.705793761 0.89488373 0.772076045 1.309723566 0.921738567 1.36806373 1.049963669 1 10.11745228 -5.262026735 24.99998929 0.905258445 1.172031615 0.458404308 0.149211302 36.59351534 1557601.149 0.019260963 0.045647268 5.47E-06 5.262026735 0.26677317 PGGARPCS(ph)PGLER ddPTM_HeLa_CUDC101_4h_R1 1 PGGARPCSPGLER 13 1 P23677 P23677 ITPKA Inositol-trisphosphate 3-kinase A 1 0 PGGARPCS(1)PGLER 71.268 0.027897 22640000 2492.9 2261.4 2470.4 2766.5 2380.3 1867.7 1852.3 1562.9 2010.6 1952.9 TRUE FALSE FALSE 2200.686041 2331.071054 2603.957297 2879.329828 2204.710011 1832.076734 1923.743831 1740.814219 1927.722217 1941.284064 1.133623915 1.200788229 1.341358199 1.483208914 1.135696755 0.943744797 0.990964623 0.896733379 0.993013981 1 10.92279552 -5.261878909 21.87330754 1.13295659 0.948529253 0.3261175 0.145768606 8.765512841 436363.2168 0.024449733 0.058037377 5.47E-06 5.261878909 -0.184427337 SVPGTTSS(ph)PLVGDISPK ddPTM_HeLa_CUDC101_4h_R1 1 SVPGTTSSPLVGDISPK 17 0 Q9UQR0;H0Y6S1;B4DRC2;Q9UQR0-2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 0 SVPGTT(0.001)S(0.027)S(0.778)PLVGDIS(0.195)PK 203.53 4.91E-17 7779700 2678.6 2443.5 2029.5 2381.8 2483.6 2868.8 2411.1 2379.5 2657.2 2675.4 TRUE FALSE FALSE 2364.618568 2518.781339 2139.220909 2478.940099 2300.389776 2814.08242 2504.096935 2650.372662 2547.669091 2659.486602 0.889125956 0.947093073 0.804373636 0.932112272 0.864975133 1.058129948 0.941571555 0.996573045 0.957955227 1 11.37693205 -5.261753752 24.99998293 0.92949055 0.993039516 0.279406481 0.058687759 40.40829352 3213602.126 0.009466254 0.022491497 5.47E-06 5.261753752 0.063548966 VTFFEPGS(ph)GDENGTSNKEDEFR ddPTM_HeLa_CUDC101_4h_R1 1 VTFFEPGSGDENGTSNKEDEFR 22 1 Q5JW30;O95793-2;O95793-3;O95793 Q5JW30 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 1 0 VT(0.001)FFEPGS(0.988)GDENGT(0.005)S(0.005)NKEDEFR 53.998 0.016267 7525200 947.09 915.41 1037.9 952.38 964.96 592.75 613.5 663.46 800.25 679.18 TRUE FALSE FALSE 836.0735459 943.6126971 1094.012013 991.2221729 893.7768233 581.4442813 637.1629005 738.9856046 767.2633563 675.1402072 1.238370248 1.397654424 1.620421954 1.468172333 1.323838832 0.861220048 0.943749008 1.094566131 1.136450397 1 9.399043329 -5.260706362 24.99999515 1.215522612 0.964235454 0.343889738 0.188128193 87.26965304 2976303.248 0.034302755 0.082086884 5.49E-06 5.260706362 -0.251287158 T(ph)TPPEAAQNGQSPMAALILVADNAGGSHASK ddPTM_HeLa_CUDC101_4h_R1 1 TTPPEAAQNGQSPMAALILVADNAGGSHASK 31 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 0 T(0.499)T(0.499)PPEAAQNGQS(0.002)PMAALILVADNAGGSHASK 75.887 6.22E-06 0 481.65 352.62 302.95 264.17 357.06 576.57 428.74 481.25 363.68 416.88 TRUE FALSE FALSE 425.1917171 363.4838042 319.3283934 274.9439944 330.7203952 565.5728879 445.2766454 536.0335547 348.6889565 414.4003792 1.02604085 0.87713193 0.770579395 0.663474283 0.798069721 1.364798191 1.074508296 1.293516082 0.84143011 1 8.694881513 -5.260357276 24.99865017 0.944378594 1.2272976 0.564499801 0.142140271 76.81238739 1774475.928 0.023060509 0.05533666 5.49E-06 5.260357276 0.282919006 ARS(ph)LEQPK ddPTM_HeLa_CUDC101_4h_R1 1 ARSLEQPK 8 1 B9ZVR7;Q15772-1;Q15772;C9J8D8 B9ZVR7 SPEG Striated muscle preferentially expressed protein kinase 1 0 ARS(1)LEQPK 72.879 0.033038 5833500 1588 1415.5 1870.2 1965.1 1865 1284 1404.7 1019.4 1699.2 1833.5 TRUE FALSE FALSE 1401.857047 1459.109877 1971.308669 2045.245272 1727.422666 1259.509839 1458.87975 1135.444375 1629.158257 1822.59426 0.769154758 0.80056758 1.081594907 1.122161589 0.947782347 0.691053333 0.800441317 0.622982526 0.893867764 1 10.83177771 -5.260230959 24.91624406 0.917412097 0.714387275 0.472271542 0.113628027 97.17755834 2003657.753 0.019683236 0.047301203 5.49E-06 5.260230959 -0.203024822 RIDFIPVSPAPS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 RIDFIPVSPAPSPTR 15 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 RIDFIPVSPAPS(0.881)PT(0.119)R 151.11 0.00040692 32422000 1641.4 1683.2 1348.9 1282.3 1651 1265.4 1162.6 1291 1517.6 1490.1 TRUE FALSE FALSE 1448.99758 1735.057397 1421.825614 1334.597737 1529.209019 1241.264603 1207.441871 1437.962222 1455.043886 1481.236819 0.978234919 1.171357189 0.959890813 0.90100227 1.032386584 0.837991999 0.815157884 0.970784822 0.98231685 1 10.5325866 -5.260118155 24.98613747 0.996815181 0.868696196 0.376708757 0.075545034 92.40597997 1747497.087 0.01036338 0.024942271 5.49E-06 5.260118155 -0.128118985 (ac)METMAS(ph)PGKDNYR ddPTM_HeLa_CUDC101_4h_R1 2 METMASPGKDNYR 13 1 S4R3E5;O60684 S4R3E5 KPNA6 Importin subunit alpha-7 1 0 MET(0.174)MAS(0.826)PGKDNYR;MET(0.002)MAS(0.998)PGKDNYR ; 68.463 0.0019069 24789000 5473.7 4757.71 4807.25 5214.2 5196.47 4509.41 4384.5 3709.74 5170.37 4763.7 TRUE FALSE FALSE 4832.081184 4904.289406 5067.144476 5426.857614 4813.136761 4423.400517 4553.611634 4132.041806 4957.24516 4735.365301 1.020424165 1.035672877 1.070064114 1.146027237 1.01642354 0.934120229 0.961617815 0.872591985 1.046855912 1 12.20926001 -5.26006399 4.514109173 1.027630451 0.925053745 0.587275267 0.046039257 0.139012735 7.638733106 0.007287962 0.018169237 5.49E-06 5.26006399 -0.102576707 EGLISQDGSS(ph)LEALLR ddPTM_HeLa_CUDC101_4h_R1 1 EGLISQDGSSLEALLR 16 0 J3KMZ8;Q92785;Q92785-2 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 EGLISQDGS(0.089)S(0.911)LEALLR 242.09 4.26E-44 7946900 909.36 829.17 842.35 1070.1 1452.7 1853.6 2189.9 2033.4 846.69 865.08 TRUE FALSE FALSE 802.7661993 854.7157449 887.889989 1113.743303 1345.537215 1818.245668 2274.365177 2264.874037 811.7890798 859.9344657 0.933520206 0.993931258 1.0325089 1.295149047 1.564697391 2.114400272 2.644812212 2.633775162 0.944012727 1 9.748082908 -5.25984044 1.02750146 0.968129408 2.796103267 0.992985079 0.055379141 0.034040699 0.060186934 0.008751184 0.04607518 5.50E-06 5.25984044 1.827973859 up QGEVPES(ph)PEAR ddPTM_HeLa_CUDC101_4h_R1 2 QGEVPESPEAR 11 0 H7BYP4;U5Y3L1;Q9H930-3;Q9H930-1;Q9H930-2;Q9H930 H7BYP4 SP140L Nuclear body protein SP140-like protein 1 0 QGEVPES(1)PEAR;QGEVPES(1)PEAR ; 133.04 0.0017868 38883000 3206.2 2576.05 2418.6 2516.9 2947.1 2456.4 2345.42 2274.75 2502.02 2563.39 TRUE FALSE FALSE 2830.374096 2655.415047 2549.356832 2619.550061 2729.698304 2409.548263 2435.883635 2533.698345 2398.885677 2548.142842 1.110759589 1.042098191 1.000476421 1.02802324 1.071250112 0.945609572 0.955944696 0.994331363 0.941425118 1 11.31523044 -5.259516074 24.99779325 1.047881045 0.964360156 0.19430915 0.047032898 130.9981566 1702614.165 0.006507388 0.015713331 5.50E-06 5.259516074 -0.083520889 TVQS(ph)LEIDLDSMR ddPTM_HeLa_CUDC101_4h_R1 2 TVQSLEIDLDSMR 13 0 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 TVQS(0.996)LEIDLDS(0.004)MR;TVQS(1)LEIDLDSMR ; 233.48 3.31E-43 28036000 2853.2 2626.2 2322.4 2821.8 2858.7 2528.1 2313.7 2332.9 2408.9 2719.9 TRUE FALSE FALSE 2518.752221 2707.110109 2447.955969 2936.885201 2647.819396 2479.880705 2402.940184 2598.467906 2309.604122 2703.721914 0.931587013 1.00125316 0.905402274 1.086237895 0.979323866 0.917209973 0.888752712 0.961070698 0.854231388 1 11.40073106 -5.259451393 23.33760234 0.974579061 0.918985278 0.080123128 0.061362521 84.58855898 992983.0854 0.006969031 0.016813607 5.50E-06 5.259451393 -0.055593783 VEVKEEEESSSNGTASQS(ph)TSPSQPR ddPTM_HeLa_CUDC101_4h_R1 1 VEVKEEEESSSNGTASQSTSPSQPR 25 1 Q92793;Q92793-2;I3L466 Q92793 CREBBP CREB-binding protein 1 0 VEVKEEEESS(0.001)S(0.003)NGT(0.088)AS(0.317)QS(0.446)T(0.121)S(0.019)PS(0.004)QPR 57.227 0.0022264 0 743.7 1125.5 1317.9 1044.8 1290.1 1526.3 1417.7 1324.4 1760.2 1788.5 TRUE FALSE FALSE 656.5246134 1160.175321 1389.14966 1087.41146 1194.931893 1497.18837 1472.381164 1475.164343 1687.643811 1777.861922 0.369277617 0.652567731 0.781359701 0.611639996 0.672117378 0.842128599 0.828175206 0.82974067 0.949254714 1 10.79592757 -5.259390699 23.38793087 0.689338825 0.832830876 0.068782127 0.168159785 166.2082088 1897392.775 0.033062101 0.079823113 5.50E-06 5.259390699 0.14349205 SQS(ph)GEDESMNQPGPIK ddPTM_HeLa_CUDC101_4h_R1 1 SQSGEDESMNQPGPIK 16 0 A0A0C4DG33;O43933-2;O43933 A0A0C4DG33 PEX1 Peroxisome biogenesis factor 1 1 0 S(0.005)QS(0.993)GEDES(0.002)MNQPGPIK 184.21 9.82E-11 18216000 3187.7 2453.2 2307.5 2466 2764.3 2365.7 2265.4 2046.3 2301.3 2326.5 TRUE FALSE FALSE 2814.042638 2528.780184 2432.25043 2566.574139 2560.383096 2320.578214 2352.777237 2279.242521 2206.43944 2312.661875 1.216798127 1.093450025 1.05171035 1.109792213 1.107115192 1.003423042 1.017345969 0.985549399 0.954069189 1 11.17533864 -5.25909406 23.13963626 1.100836967 1.003630102 0.13028719 0.069468374 84.25740912 831281.3636 0.011422232 0.027637932 5.51E-06 5.25909406 -0.097206866 VATTPGSPS(ph)LGR ddPTM_HeLa_CUDC101_4h_R1 1 VATTPGSPSLGR 12 0 A0A087WWW7;E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0;H0Y4U1 A0A087WWW7 TNS1 Tensin-1 1 0 VATT(0.005)PGS(0.293)PS(0.702)LGR 113.95 0.004762 26887000 1564.9 1683.4 1318.8 1319.7 1432.9 1784.8 1455.3 1464.3 1470.7 1565.6 TRUE FALSE FALSE 1381.464794 1735.263559 1390.098317 1373.52307 1327.197822 1750.757914 1511.431408 1630.989993 1410.077124 1556.287742 0.887666694 1.115001752 0.893214205 0.882563702 0.852797196 1.124957723 0.971177352 1.048000283 0.90605168 1 10.60389311 -5.258968707 24.9989172 0.94422136 1.040358336 0.293322399 0.07980965 254.6762954 2576860.699 0.01157494 0.028119434 5.51E-06 5.258968707 0.096136976 SFS(ph)ASQSTDR ddPTM_HeLa_CUDC101_4h_R1 2 SFSASQSTDR 10 0 Q9ULJ3-2;Q9ULJ3 Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 S(0.042)FS(0.957)ASQSTDR;S(0.053)FS(0.834)AS(0.038)QS(0.073)T(0.002)DR ; 122.55 0.0042172 45508000 1578.45 1092.76 1403.45 1623.65 1520.07 1813.82 1695.56 1537.03 1730.6 1548.53 TRUE FALSE FALSE 1393.426484 1126.42664 1479.324752 1689.869465 1407.937465 1779.224406 1760.958317 1711.999282 1659.263936 1539.319275 0.905222527 0.731769334 0.96102529 1.097803096 0.914649409 1.155851443 1.143985102 1.112179462 1.077920587 1 10.58807678 -5.258951418 24.90401282 0.946160472 1.138003323 0.425015567 0.096503631 140.9509919 1410879.48 0.013269358 0.032177762 5.51E-06 5.258951418 0.191842851 RGVS(ph)GDRDENSFSLNSSISSSAR ddPTM_HeLa_CUDC101_4h_R1 1 RGVSGDRDENSFSLNSSISSSAR 23 2 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 RGVS(0.994)GDRDENS(0.005)FSLNSSISSSAR 73.936 0.001253 20545000 695.1 569.42 545.1 609.06 523.24 624.79 341.88 530.42 665.1 707.74 TRUE FALSE FALSE 613.6214317 586.9631553 574.5697548 633.9000994 484.6416276 612.8731717 355.0664261 590.8008688 637.6842965 703.530331 0.872203237 0.834311087 0.816695073 0.901027392 0.688870979 0.871139658 0.504692421 0.839766024 0.906406261 1 9.458468813 -5.258906201 0.114977451 1.150077429 0.369962927 0.351826088 0.104621374 15.14325388 0.426840474 0.801201825 2.287782509 5.51E-06 5.258906201 -0.780114503 S(ph)STVAPAQPDGAESEWTDVETR ddPTM_HeLa_CUDC101_4h_R1 2 SSTVAPAQPDGAESEWTDVETR 22 0 Q02241;A0A2U3TZL8;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 S(0.691)S(0.135)T(0.173)VAPAQPDGAESEWTDVETR;S(0.803)S(0.188)T(0.009)VAPAQPDGAESEWTDVETR ; 136.26 1.70E-07 7592900 7174.9 6749 6597.6 5815.1 6143 4989.6 4492.7 3543.7 6950 6709.3 TRUE FALSE FALSE 6333.869098 6956.92869 6954.286213 6052.264913 5689.843129 4894.431693 4665.984944 3947.100484 6663.518058 6669.392785 0.949692019 1.043112756 1.042716547 0.907468657 0.85312761 0.733864664 0.699611658 0.591823066 0.999119151 1 12.7033397 -5.258669276 1.08869464 0.986210758 0.613680272 0.937638248 0.03745057 0.116592973 0.236443999 0.006598997 0.032912203 5.51E-06 5.258669276 -0.372530486 ES(ph)PGAAATSSSGPQAQQHR ddPTM_HeLa_CUDC101_4h_R1 2 ESPGAAATSSSGPQAQQHR 19 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 ES(1)PGAAATSSSGPQAQQHR;ES(1)PGAAATSSSGPQAQQHR ; 236.27 3.52E-72 13019000 2165.24 1330.39 1477.49 1468.2 1756.35 2139.87 2051.25 1573.09 2210.46 1766.53 TRUE FALSE FALSE 1911.433849 1371.377739 1557.367579 1528.079542 1626.78756 2099.055545 2130.3674 1752.164207 2119.343903 1756.022601 1.08850185 0.78095677 0.886872172 0.870193551 0.926404682 1.195346543 1.213177665 0.997802765 1.206900129 1 10.7780957 -5.25861677 24.92841353 0.990852641 1.14321586 0.26056552 0.125949661 267.6725394 2363979.397 0.017417641 0.042326556 5.51E-06 5.25861677 0.152363219 SPLGEAPPGT(ph)PPCR ddPTM_HeLa_CUDC101_4h_R1 2 SPLGEAPPGTPPCR 14 0 M0QXZ5;Q96B54 M0QXZ5 ZNF428 Zinc finger protein 428 1 0 SPLGEAPPGT(1)PPCR;S(0.327)PLGEAPPGT(0.673)PPCR ; 136.57 0.00013412 34827000 2707.44 2133.1 1753.77 1883.32 2393.04 1772.23 1801.83 1932.65 2190.59 1683.26 TRUE FALSE FALSE 2390.077987 2198.818283 1848.584111 1960.12993 2216.510207 1738.427665 1871.327187 2152.655064 2100.292953 1673.247895 1.428406392 1.314101927 1.10478795 1.171452202 1.32467533 1.038954043 1.118380123 1.286512937 1.255219241 1 10.70843548 -5.258231242 24.95877371 1.212436717 1.144992158 0.067867653 0.127194471 996.0461103 7749021.044 0.024919994 0.060731636 5.52E-06 5.258231242 -0.067444559 ALSSGGSIT(ph)SPPLSPALPK ddPTM_HeLa_CUDC101_4h_R1 2 ALSSGGSITSPPLSPALPK 19 0 I1E4Y6;Q6Y7W6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;E7ESB6;C9JW88;F8WCD5;C9JPV7;C9JXQ0;C9J0V6;C9JHT0;C9JRZ2 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 ALSS(0.001)GGS(0.025)IT(0.882)S(0.091)PPLS(0.001)PALPK;ALSSGGSIT(0.5)S(0.5)PPLS(0.001)PALPK ; 219.58 2.06E-32 789770000 8593.3 7801.9 6634.7 7398.7 8395.9 6912.5 6594.9 6190.2 7758 7748.3 TRUE FALSE FALSE 7586.006401 8042.267291 6993.391951 7700.450966 7776.551184 6780.65558 6849.267502 6894.867346 7438.211956 7702.212767 0.9849126 1.044150238 0.907971795 0.99977126 1.009651566 0.880351632 0.889259711 0.895180068 0.96572403 1 12.91105726 -5.258061612 24.99403069 0.991633744 0.888363388 0.650276756 0.033235683 119.6234756 885156.8189 0.004270696 0.010429261 5.52E-06 5.258061612 -0.103270356 TLLSESSSQSSKSPS(ph)LSSK ddPTM_HeLa_CUDC101_4h_R1 1 TLLSESSSQSSKSPSLSSK 19 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 TLLSES(0.006)S(0.006)S(0.002)QS(0.026)S(0.026)KS(0.09)PS(0.84)LS(0.002)SK 88.19 0.0022687 271390000 2711.1 1691.3 1822.7 1807.9 2194.8 2242 2236.6 1727.8 2096 1932.3 TRUE FALSE FALSE 2393.308968 1743.406948 1921.240675 1881.633976 2032.893977 2199.237585 2322.866411 1924.485768 2009.601993 1920.806594 1.245991645 0.907643151 1.000225989 0.979606163 1.058354331 1.144955246 1.20931822 1.001915432 1.046228183 1 10.90749655 -5.258061179 23.32418022 1.079861805 1.127788488 0.001041229 0.102180707 427.8411189 2953888.771 0.018078481 0.043953018 5.52E-06 5.258061179 0.047926683 TPADTGFAFPDWAYKPES(ph)SPGSR ddPTM_HeLa_CUDC101_4h_R1 1 TPADTGFAFPDWAYKPESSPGSR 23 1 P50548 P50548 ERF ETS domain-containing transcription factor ERF 1 0 TPADTGFAFPDWAYKPES(0.454)S(0.454)PGS(0.091)R 144.83 1.42E-07 103140000 1589.6 1258 1107.2 1319.3 1443.8 1982.9 1980 1594.9 1449.9 1484.2 TRUE FALSE FALSE 1403.269498 1296.757489 1167.058581 1373.106757 1337.29375 1945.079486 2056.369263 1776.456969 1390.134508 1475.371912 0.951129329 0.878936001 0.791026704 0.930685168 0.906411285 1.318365539 1.393797215 1.204074006 0.942226497 1 10.52686296 -5.257978035 24.97777929 0.946964484 1.314250777 0.857274659 0.072242716 90.85524298 655625.9835 0.011420868 0.027868276 5.52E-06 5.257978035 0.367286293 LSLQDQVDT(ph)LTFQS(ph)QSLRDR ddPTM_HeLa_CUDC101_4h_R1 1 LSLQDQVDTLTFQSQSLRDR 20 1 Q5JR59-4;Q5JR59-3;Q5JR59 Q5JR59-4 MTUS2 Microtubule-associated tumor suppressor candidate 2 2 0 LS(0.001)LQDQVDT(0.869)LT(0.181)FQS(0.475)QS(0.475)LRDR 47.09 0.039482 3915000 409.85 329.11 389.8 342.03 433.89 521.24 437.01 492.09 384.08 519.59 TRUE FALSE FALSE 361.8080043 339.249489 410.8737671 355.9794618 401.8827991 511.2982154 453.8656221 548.1075365 368.2480598 516.4994556 0.700500263 0.656824485 0.795496999 0.689215561 0.778089492 0.989929825 0.87873398 1.061196736 0.712968922 1 9.012623018 -5.257593694 24.7497516 0.817488872 0.966831568 0.385456195 0.109281112 384.8359637 2476679.328 0.020346512 0.049761977 5.53E-06 5.257593694 0.149342696 TLRDS(ph)PNVEAAHLAR ddPTM_HeLa_CUDC101_4h_R1 1 TLRDSPNVEAAHLAR 15 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YC29;E5RJ97 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 T(0.111)LRDS(0.889)PNVEAAHLAR 117.78 0.00060257 28459000 236.55 217.78 330.38 231.94 293.6 348.16 396.92 263.05 319.8 298.44 TRUE FALSE FALSE 208.8219676 224.4895437 348.2413421 241.3995157 271.9417129 341.5194281 412.2293374 292.9945487 306.6177086 296.6648656 0.703898546 0.756710921 1.173854347 0.813711173 0.916663024 1.151196072 1.389545528 0.98762807 1.033549113 1 8.212690267 -5.257258064 3.748601102 0.871556057 1.205289403 0.337614086 0.161566744 0.163512454 5.155386718 0.024077223 0.061925301 5.53E-06 5.257258064 0.333733346 GS(ph)EGY(ph)LAAT(ph)YPT(ph)VGQTSPR ddPTM_HeLa_CUDC101_4h_R1 1 GSEGYLAATYPTVGQTSPR 19 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 4 0 GS(0.954)EGY(0.946)LAAT(0.599)Y(0.522)PT(0.737)VGQT(0.236)S(0.007)PR 51.841 0.0028803 0 512.48 442.63 513.42 326.23 379.4 663.15 459.51 476.46 495.53 513.31 TRUE FALSE FALSE 452.4078713 456.2669057 541.1770382 339.5350695 351.4124179 650.5015186 477.2334546 530.6982805 475.1040437 510.2568093 0.886627798 0.894190724 1.060597386 0.665419968 0.688697165 1.274851225 0.935280913 1.040061143 0.931107699 1 8.99507972 -5.257245618 24.9985607 0.913581235 1.068586051 0.282026148 0.142750748 472.0562169 2813862.315 0.020740264 0.050858141 5.53E-06 5.257245618 0.155004816 (ac)IVREET(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 IVREETR 7 1 K7EIZ5 K7EIZ5 1 0 IVREET(1)R 49.418 0.030842 9017800 203.67 137.65 182.84 142.68 150.7 239.28 271.7 114.32 185.87 145.73 TRUE FALSE FALSE 179.7961113 141.8908333 192.7248835 148.4991071 139.5831612 234.7161327 282.17956 127.3337267 178.2083599 144.8631915 1.24114421 0.979481619 1.330392362 1.025098961 0.963551609 1.620260677 1.947903792 0.878992968 1.230183859 1 7.178547255 -5.257111551 24.99580235 1.107137352 1.528937628 0.27664857 0.272830223 306.3373475 1769272.595 0.035483066 0.087105836 5.53E-06 5.257111551 0.421800276 EAEEGPTGASESQDS(ph)PRK ddPTM_HeLa_CUDC101_4h_R1 1 EAEEGPTGASESQDSPRK 18 1 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 EAEEGPTGAS(0.011)ES(0.307)QDS(0.681)PRK 64.761 0.015944 5564700 1051.6 722.64 1018.1 894.55 989.78 1072.3 987.6 951.64 934.58 969.08 TRUE FALSE FALSE 928.3330421 744.9036819 1073.141566 931.0336156 916.7659013 1051.847664 1025.692063 1059.970851 896.0562168 963.3158691 0.963684988 0.773270436 1.11400798 0.966488403 0.951677358 1.091903183 1.064751548 1.10033571 0.930179026 1 9.911865122 -5.257052982 24.1733786 0.973392867 1.083572299 0.340226794 0.079821733 223.5081607 1231737.811 0.010656595 0.026154948 5.53E-06 5.257052982 0.110179431 TEEARPSPAPGPGTPT(ph)GTPTR ddPTM_HeLa_CUDC101_4h_R1 2 TEEARPSPAPGPGTPTGTPTR 21 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 T(0.001)EEARPSPAPGPGT(0.306)PT(0.64)GT(0.045)PT(0.008)R;TEEARPS(0.001)PAPGPGT(0.176)PT(0.695)GT(0.102)PT(0.027)R ; 101.04 0.00023351 17974000 1679 1010.42 1377.74 1478.44 1500.36 1360.45 1250.19 1196.09 1872.02 1391.99 TRUE FALSE FALSE 1482.190165 1041.549843 1452.224792 1538.737174 1389.681432 1334.501683 1298.410247 1332.248051 1794.854543 1383.710382 1.071170806 0.752722431 1.049514993 1.112037023 1.004315246 0.96443714 0.938354055 0.962808452 1.297131659 1 10.43432629 -5.256974659 3.935494844 1.018531076 0.951868688 0.069764116 0.127094453 0.439450136 15.8568777 0.013396234 0.034179409 5.53E-06 5.256974659 -0.066662388 RT(ph)SSEQAVALPR ddPTM_HeLa_CUDC101_4h_R1 1 RTSSEQAVALPR 12 1 Q14934-18;Q14934-17;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-9;Q14934-10;Q14934-11;Q14934-12;Q14934-13;Q14934-14;Q14934-15;Q14934-16;Q14934-2 Q14934-18 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 RT(0.848)S(0.116)S(0.036)EQAVALPR 128.85 0.018305 11320000 1231.7 1116.5 1079.4 988.82 1251.8 950.4 891.01 1067.2 1346.9 1039.4 TRUE FALSE FALSE 1087.321993 1150.898042 1137.755629 1029.148354 1159.457208 932.2727035 925.3765542 1188.685734 1291.380212 1033.217603 1.052364952 1.113897052 1.101177164 0.996061576 1.122181044 0.902300446 0.895626005 1.150469883 1.249862767 1 10.01292841 -5.256775961 24.99822679 1.04141645 0.974081508 0.06408895 0.1025234 628.2131283 3367519.975 0.010825509 0.02667041 5.54E-06 5.256775961 -0.067334942 TTRT(ph)PEEGGYSYDISEK ddPTM_HeLa_CUDC101_4h_R1 2 TTRTPEEGGYSYDISEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.001)TRT(0.921)PEEGGYS(0.061)YDIS(0.016)EK;T(0.26)T(0.26)RT(0.481)PEEGGYSYDISEK ; 203.17 9.71E-16 730700000 7572.9 6714.5 6400.2 6850.4 7374.9 6381.5 5860.6 5565.9 6864.4 7229.2 TRUE FALSE FALSE 6685.216142 6921.365786 6746.214172 7129.788922 6830.86832 6259.78352 6086.645305 6199.499558 6581.446527 7186.200397 0.930285237 0.963146782 0.938773455 0.992150028 0.950553553 0.871083907 0.846990756 0.862695057 0.915845115 1 12.81101345 -5.256423367 3.407423089 0.965422536 0.855666219 0.744619925 0.025454721 0.088970122 2.189255973 0.004025863 0.010556997 5.54E-06 5.256423367 -0.109756318 ASSEDVASS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 1 ASSEDVASSPER 12 0 M0R2H0;A0A087WWI0;Q9H2I8 M0R2H0 C10orf11 Leucine-rich repeat-containing protein C10orf11 1 0 ASSEDVAS(0.027)S(0.973)PER 137.95 0.0013134 60979000 4799.5 5009.4 4707.4 5048.4 5555.1 4291.9 4200.4 4433.6 5122.8 5148.3 TRUE FALSE FALSE 4236.909886 5163.733676 4961.896283 5254.295573 5145.31134 4210.039158 4362.410835 4938.303103 4911.636016 5117.677683 0.827896978 1.008999393 0.969560139 1.02669529 1.005399648 0.822646407 0.852420005 0.964950004 0.959739226 1 12.32127357 -5.256140641 24.96658126 0.941141612 0.877246931 0.19887724 0.066921427 805.039944 3793169.802 0.012110004 0.029891403 5.54E-06 5.256140641 -0.063894681 SNSS(ph)EALLVDR ddPTM_HeLa_CUDC101_4h_R1 1 SNSSEALLVDR 11 0 Q96HB5-2;Q96HB5;Q96HB5-5;Q96HB5-3;Q96HB5-4 Q96HB5-2 CCDC120 Coiled-coil domain-containing protein 120 1 0 S(0.006)NS(0.018)S(0.976)EALLVDR 163.62 7.23E-05 16509000 1371.4 1324 1239.8 1229.4 1287.7 1238.2 1076.3 1031.4 1519.9 1314.7 TRUE FALSE FALSE 1210.646571 1364.790871 1306.827338 1279.540246 1192.708936 1214.583398 1117.813252 1148.810407 1457.249079 1306.880106 0.926363915 1.044312225 0.999959623 0.979080055 0.912638375 0.9293763 0.85532961 0.879048049 1.115059501 1 10.35191108 -5.255337271 1.379420003 0.974400456 0.868137531 0.451505427 0.055601953 0.284906793 0.990501941 0.00612453 0.024794544 5.55E-06 5.255337271 -0.106262926 TWGGPGT(ph)PPTPSGTGR ddPTM_HeLa_CUDC101_4h_R1 1 TWGGPGTPPTPSGTGR 16 0 Q6ICB4;B1AHR3 Q6ICB4 FAM109B Sesquipedalian-2 1 0 TWGGPGT(0.978)PPT(0.007)PS(0.007)GT(0.007)GR 96.666 0.026867 13379000 973.27 544.94 786.41 775.48 1004.3 564.18 674.17 591.13 718.75 795.44 TRUE FALSE FALSE 859.184766 561.7289555 828.9257034 807.1074263 930.2147898 553.4192065 700.1729627 658.4218498 689.1228208 790.7086875 1.086600893 0.710412019 1.048332612 1.020739293 1.176431731 0.699902777 0.885500531 0.832698388 0.871525546 1 9.627002465 -5.254853167 24.97974049 1.023193211 0.813980567 0.264208861 0.129612077 412.8046117 1565651.709 0.016824013 0.041798024 5.56E-06 5.254853167 -0.209212644 GSDIDNPTLTVMDISPPS(ph)RSPR ddPTM_HeLa_CUDC101_4h_R1 2 GSDIDNPTLTVMDISPPSRSPR 22 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 GSDIDNPTLT(0.005)VMDIS(0.001)PPS(0.497)RS(0.497)PR;GSDIDNPTLTVMDISPPS(0.7)RS(0.3)PR ; 105.44 1.92E-05 80547000 2897.9 3115.3 2678.4 2665.6 3224.3 2471.2 2640.2 2280.5 2712.5 2893.2 TRUE FALSE FALSE 2558.212555 3211.2787 2823.202406 2774.31469 2986.449813 2424.065977 2742.033398 2540.102902 2600.689602 2875.991118 0.889506417 1.116581578 0.981645036 0.964646474 1.038407175 0.842862818 0.953422068 0.883209578 0.904275951 1 11.4898435 -5.254729873 24.9921418 0.968804411 0.899190552 0.260931477 0.066827638 753.4867455 2806642.512 0.01002609 0.024921599 5.56E-06 5.254729873 -0.06961386 SAAS(ph)REDLVGPEVGASPQSGR ddPTM_HeLa_CUDC101_4h_R1 1 SAASREDLVGPEVGASPQSGR 21 1 Q86X27-3;Q86X27;H7C2H2 Q86X27-3 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 S(0.23)AAS(0.769)REDLVGPEVGAS(0.001)PQSGR 76.678 0.0031402 0 429.17 361.82 352.02 453.48 451.75 574.85 554.21 505.58 408.11 519.13 TRUE FALSE FALSE 378.8633432 372.9672453 371.051266 471.9748745 418.4253025 563.885694 575.5860653 563.1331836 391.2875331 516.0421917 0.734171254 0.722745642 0.719032808 0.914605205 0.81083545 1.092712385 1.115385669 1.091254151 0.758247173 1 9.011345215 -5.254617714 23.00168678 0.847560066 1.10134431 0.670272989 0.090767219 119.6237413 403348.5539 0.017143224 0.04253987 5.56E-06 5.254617714 0.253784244 GSPS(ph)GGSTAEASDTLSIR ddPTM_HeLa_CUDC101_4h_R1 1 GSPSGGSTAEASDTLSIR 18 0 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 GS(0.384)PS(0.616)GGSTAEASDTLSIR 205.98 7.46E-24 16332000 557.5 640 336.44 453.08 492.15 609.73 541.17 560.75 546.39 478.3 TRUE FALSE FALSE 492.1506951 659.7176414 354.6289641 471.5585608 455.845075 598.1004161 562.0431082 624.5835134 523.8675729 475.4550503 1.035115086 1.387549971 0.745872746 0.991804715 0.958755354 1.25795365 1.182116181 1.313654178 1.101823553 1 8.893165144 -5.253923322 24.51910662 1.019408602 1.244328844 0.302407627 0.152009341 394.4730267 1286855.86 0.020042531 0.049989418 5.57E-06 5.253923322 0.224920241 RS(ph)SIGLR ddPTM_HeLa_CUDC101_4h_R1 2 RSSIGLR 7 1 Q96GN5-5;Q96GN5-2;Q96GN5;C9J8L0;C9IZR6;Q96GN5-4 Q96GN5-5 CDCA7L Cell division cycle-associated 7-like protein 1 0 RS(0.999)S(0.001)IGLR;RS(0.983)S(0.017)IGLR ; 88.643 0.018649 15737000 2710.78 2156.46 2506.9 2635 2752.8 3069.7 2893.4 2536.5 2753.4 3051.6 TRUE FALSE FALSE 2393.026478 2222.897977 2642.430597 2742.466689 2549.731428 3011.150587 3004.999407 2825.244907 2639.903687 3033.448947 0.78887976 0.732795579 0.871097765 0.904075439 0.840538764 0.992649172 0.990621388 0.931363921 0.870264749 1 11.56674332 -5.253721796 24.60134588 0.879871675 0.973452489 0.325404318 0.070056142 685.5624031 2185357.859 0.013724978 0.034263297 5.58E-06 5.253721796 0.093580814 EAEAYTGLS(ph)PPVPSFNCEVR ddPTM_HeLa_CUDC101_4h_R1 2 EAEAYTGLSPPVPSFNCEVR 20 0 O43164-2;O43164 O43164-2 PJA2 E3 ubiquitin-protein ligase Praja-2 1 0 EAEAY(0.001)T(0.003)GLS(0.536)PPVPS(0.46)FNCEVR;EAEAYT(0.008)GLS(0.6)PPVPS(0.392)FNCEVR ; 101.64 0.00028163 0 1163.03 1108.58 700.48 799.82 1017.59 687.61 527.33 720.42 1272.08 794.04 TRUE FALSE FALSE 1026.701386 1142.734036 738.3500676 832.4401167 942.524413 674.4949849 547.6692947 802.4297008 1219.644324 789.3170148 1.300746553 1.447750415 0.935429053 1.054633438 1.194101223 0.854529894 0.693852134 1.016612699 1.54518945 1 9.624461039 -5.25341463 21.47863772 1.148980641 0.838883365 0.373037005 0.200220145 70.23545179 187982.4369 0.024859344 0.061872527 5.58E-06 5.25341463 -0.310097275 KST(ph)T(ph)SAS(ph)T(ph)S(ph)EEKKK ddPTM_HeLa_CUDC101_4h_R1 1 KSTTSASTSEEKKK 14 3 A0A494C050 A0A494C050 5 0 KS(0.023)T(0.95)T(0.562)S(0.562)AS(0.958)T(0.948)S(0.996)EEKKK 50.145 0.0032929 0 1108 990.29 777.88 836.67 991.96 1416.2 1185.7 1382.2 870.71 1148.1 TRUE FALSE FALSE 978.1219196 1020.799661 819.9345458 870.793019 918.7850871 1389.188345 1231.432846 1539.544061 834.8189653 1141.27105 0.857046115 0.894441037 0.718439801 0.763002811 0.805054231 1.21722911 1.079001212 1.3489732 0.731481768 1 10.15642575 -5.253280722 24.60331153 0.891260141 1.201461212 0.690758533 0.113704599 264.7715717 798444.0622 0.016766716 0.041926432 5.58E-06 5.253280722 0.310201071 YEAVS(ph)PERLELER ddPTM_HeLa_CUDC101_4h_R1 1 YEAVSPERLELER 13 1 Q92585 Q92585 MAML1 Mastermind-like protein 1 1 0 YEAVS(1)PERLELER 66.568 0.034115 31511000 2389.5 2103.7 2019.9 2114.9 2496.1 1824.2 1795.1 1607.6 2281.9 2289.2 TRUE FALSE FALSE 2109.406432 2168.512504 2129.101904 2201.154763 2311.967676 1789.406424 1864.337608 1790.602686 2187.839116 2275.583737 0.926973769 0.952947795 0.935628898 0.96729236 1.015988838 0.786350507 0.819278842 0.786876201 0.96144083 1 11.15202096 -5.25326074 24.99447956 0.964557126 0.799679536 0.89423263 0.026511253 174.2327404 532465.5708 0.004712681 0.01178706 5.58E-06 5.25326074 -0.164877591 NMS(ph)PDEIKIPPEPPGR ddPTM_HeLa_CUDC101_4h_R1 1 NMSPDEIKIPPEPPGR 16 1 J3QQJ0;Q9UHR5-2;Q9UHR5;J3KS14;F5H478;J3KRU5;X6R3T8;J3QLH3 J3QQJ0 SAP30BP SAP30-binding protein 1 0 NMS(1)PDEIKIPPEPPGR 160.09 0.00031601 8129500 832.98 689.67 489.51 625.58 690.39 815.13 682.53 691.41 636.82 720.96 TRUE FALSE FALSE 735.3393471 710.9179152 515.9743913 651.0938564 639.4613052 799.5827533 708.8554107 770.1173196 610.5700101 716.6716979 1.0260477 0.991971522 0.719959213 0.908496678 0.892265325 1.115689033 0.989093629 1.074574763 0.851952173 1 9.485168572 -5.253207919 24.9492773 0.973603158 1.052716583 0.159298648 0.101126024 1116.751116 3384826.043 0.01480177 0.037024745 5.58E-06 5.253207919 0.079113425 LSLFSDGDSS(ph)ESEDTLSSSER ddPTM_HeLa_CUDC101_4h_R1 1 LSLFSDGDSSESEDTLSSSER 21 0 M0QZ79;M0QXD7;M0R025;M0QYG0;M0QYA8;Q8IV63-2;Q8IV63 M0QZ79 VRK3 Inactive serine/threonine-protein kinase VRK3 1 0 LSLFSDGDS(0.047)S(0.906)ES(0.047)EDTLSSSER 180.76 1.16E-11 4302300 2335.3 2513.6 2019.2 2257.6 2606.2 1887.6 2079 1586.8 2125.7 2341 TRUE FALSE FALSE 2061.559674 2591.041037 2128.36406 2349.674686 2413.945818 1851.597175 2159.187726 1767.434898 2038.077746 2327.075628 0.88590145 1.113432243 0.914608891 1.009711355 1.037330196 0.795675548 0.927854557 0.759509006 0.875810705 1 11.18430238 -5.253115145 24.72706875 0.965562051 0.837697186 0.418528453 0.079470941 451.6868084 1341726.974 0.01088336 0.027223364 5.58E-06 5.253115145 -0.127864865 LLS(ph)PLSSAR ddPTM_HeLa_CUDC101_4h_R1 3 LLSPLSSAR 9 0 A0A087WZ13;Q8IY67-2;E9PAU2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 LLS(0.996)PLS(0.004)SAR;LLS(0.484)PLS(0.312)S(0.204)AR;LLS(0.996)PLS(0.004)SAR ;; 144.77 0.0012675 142286700 15502.3 12276.3 9973.1 11454.9 11102.9 9845.8 8227.7 4709.1 13076 11284 TRUE FALSE FALSE 13685.14389 12654.51825 10512.27595 11922.08033 10283.86119 9658.007769 8545.045145 5245.164909 12537.00175 11216.88227 1.220048813 1.128167164 0.937183408 1.062869347 0.916819928 0.861024261 0.761802161 0.467613441 1.117690411 1 13.45338411 -4.110389535 0.607477271 1.101283113 5.55E-17 0.873220142 0.07342598 1.239804279 0.274704201 0.017714339 0.991466472 7.76E-05 4.110389535 -1.101283113 down (ac)DDDIAALVVDNGS(ph)GMCK ddPTM_HeLa_CUDC101_4h_R1 3 DDDIAALVVDNGSGMCK 17 0 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;C9JUM1;C9JZR7;C9JTX5 P60709 ACTB "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed" 1 0 DDDIAALVVDNGS(1)GMCK;DDDIAALVVDNGS(1)GMCK;DDDIAALVVDNGS(1)GMCK ;; 160.04 5.11E-56 11386900 2874.67 2652.71 2345.66 2314.87 2792.23 2208.38 2032.48 2133.7 2635.8 2387.46 TRUE FALSE FALSE 2537.70554 2734.436851 2472.473475 2409.280404 2586.252756 2166.258831 2110.873434 2376.591783 2527.151208 2373.259282 1.069291316 1.152186308 1.041805037 1.015177913 1.089747242 0.912777987 0.889440716 1.001404188 1.064844127 1 11.21265401 -5.25301071 24.83348894 1.045253124 0.930030931 0.567971894 0.049375807 375.5359235 1106442.675 0.007558386 0.018940452 5.58E-06 5.25301071 -0.115222193 DVNAAIAT(ph)IK ddPTM_HeLa_CUDC101_4h_R1 1 DVNAAIATIK 10 0 Q9BQE3;F5H5D3;A0A1W2PQM2;P0DPH8;P0DPH7;P0DPH7-2;Q6PEY2;P68363;P68363-2;Q71U36-2;Q71U36 Q9BQE3;P68363 TUBA1C;TUBA3E;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain 1 0 DVNAAIAT(1)IK 124.07 0.01855 10169000 2211 1983.7 1686 1754.8 1835.4 2486.6 2111.9 1967.1 1347.4 2052.2 TRUE FALSE FALSE 1951.829932 2044.815446 1777.15026 1826.368329 1700.006199 2439.172248 2193.35669 2191.026713 1291.859602 2039.993423 0.956782463 1.002363744 0.871154897 0.895281479 0.833339059 1.195676525 1.075178315 1.074036165 0.633266552 1 10.99434879 -5.252255027 24.99470464 0.957640422 1.110985128 0.337045091 0.120686732 412.4055957 1122335.292 0.009676838 0.024284736 5.59E-06 5.252255027 0.153344706 RSGPTDDGEEEMEEDTVTNGS ddPTM_HeLa_CUDC101_4h_R1 2 RSGPTDDGEEEMEEDTVTNGS 21 1 P09661 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A 0 0 ; ; 97.2 0.0059676 41184200 2292.07 2593.4 2565.46 2085.48 2152.12 2332.08 2188.11 2365.66 2321.03 2029.3 FALSE FALSE TRUE 2023.397029 2673.29958 2704.156528 2170.534889 1993.362395 2287.59946 2272.506136 2634.957172 2225.356161 2017.229633 1.003057359 1.325233149 1.340529845 1.075997919 0.988168309 1.134030267 1.126548063 1.306225691 1.103174435 1 10.97815961 -7.351335689 13.05404333 1.00138776 1.175201368 0.253911932 0.112365282 0.967446752 138.6468698 0.019403585 0.022182198 4.45E-08 7.351335689 0.173813608 SIQDLTVTGTEPGQVS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 2 SIQDLTVTGTEPGQVSSR 18 0 Q9UG54;O43318-4;O43318-3;O43318-2;O43318 Q9UG54 DKFZp586F0420;MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 0 SIQDLTVTGT(0.002)EPGQVS(0.632)S(0.366)R;SIQDLT(0.003)VT(0.043)GT(0.043)EPGQVS(0.455)S(0.455)R ; 200.1 6.73E-17 72055000 4008.19 3152.55 2463.63 2855.95 3301.02 2691.78 2532.97 2341.16 2937.24 2506.77 TRUE FALSE FALSE 3538.356044 3249.676329 2596.82129 2972.427985 3057.510331 2640.438781 2630.667501 2607.668191 2816.165724 2491.859621 1.419966043 1.304116934 1.042121823 1.192855312 1.226999429 1.059625815 1.055704535 1.046474757 1.130146217 1 11.28300708 -5.252126553 21.17536649 1.199937754 1.054111835 0.220617495 0.113969886 132.5364893 301348.804 0.023320259 0.058281548 5.60E-06 5.252126553 -0.145825919 RSKGNNKHSK ddPTM_HeLa_CUDC101_4h_R1 1 RSKGNNKHSK 10 3 P0C7H9 P0C7H9 USP17L7 Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7 0 0 68.657 0.040636 0 325.19 412.77 424.94 492.38 494.47 496.47 440.57 433.27 116.37 137.71 FALSE FALSE TRUE 287.0717212 425.4869544 447.9135418 512.4613846 457.9939332 487.0006619 457.5629325 482.5917055 111.5731793 136.8908948 2.097084116 3.108219543 3.272047731 3.743575388 3.345685876 3.557582574 3.342537377 3.525374761 0.815051867 1 7.09688268 -7.587381276 0.722656845 1.1854573 3.55821583 0.94999196 0.229918176 0.086351173 0.097886406 0.069877164 0.066714758 2.59E-08 7.587381276 2.37275853 EGSIETLSNS(ph)SGSTSGSIPR ddPTM_HeLa_CUDC101_4h_R1 1 EGSIETLSNSSGSTSGSIPR 20 0 K7ESE9;Q9H6U6-6;Q9H6U6-2;Q9H6U6;Q9H6U6-3;Q9H6U6-8 K7ESE9 BCAS3 Breast carcinoma-amplified sequence 3 1 0 EGSIETLS(0.091)NS(0.874)S(0.026)GS(0.005)TS(0.003)GS(0.002)IPR 133.35 1.86E-05 9718400 1764.8 1446.1 1457.3 1491.4 1729 1181.2 1283.5 1077.6 1356.9 1298.5 TRUE FALSE FALSE 1557.932819 1490.652627 1536.086046 1552.225738 1601.455115 1158.670578 1333.005025 1200.269628 1300.968008 1290.776464 1.20697337 1.154849556 1.190048075 1.202551938 1.240691289 0.897653939 1.032715626 0.929881867 1.007895669 1 10.33402346 -5.250763415 24.89618479 1.12764217 0.961346991 0.512899588 0.083720883 576.3769635 1344099.451 0.014211697 0.035801334 5.61E-06 5.250763415 -0.16629518 VLQLEDDS(ph)LDSK ddPTM_HeLa_CUDC101_4h_R1 1 VLQLEDDSLDSK 12 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 VLQLEDDS(1)LDSK 173.44 6.56E-07 3268000 1192.4 961.8 1091.4 969.88 975.9 1527.3 1581.4 1253.7 904.59 1008.3 TRUE FALSE FALSE 1052.62868 991.431918 1150.404385 1009.435899 903.9098013 1498.169297 1642.395128 1396.41614 867.3024173 1002.302587 1.050210479 0.989154304 1.147761565 1.007116924 0.901833252 1.494727557 1.638622058 1.393208158 0.865309966 1 9.969102397 -5.250381491 24.02836865 1.022796532 1.521829651 0.86112452 0.094136993 89.85171127 195243.3697 0.010434539 0.026302043 5.62E-06 5.250381491 0.49903312 RSMMQSPR ddPTM_HeLa_CUDC101_4h_R1 1 RSMMQSPR 8 1 Q9C0H6;Q9C0H6-2 Q9C0H6 KLHL4 Kelch-like protein 4 0 0 69.998 0.022668 33877000 864.22 1200.6 2055.9 1439.9 2132.1 1763.3 1656 1362.5 2175.1 3365.9 FALSE FALSE TRUE 762.9174417 1237.589063 2167.048173 1498.625346 1974.819231 1729.66799 1719.872475 1517.601493 2085.441457 3345.879477 0.228017012 0.369884532 0.647676698 0.447901772 0.590224258 0.516954661 0.514027025 0.453573269 0.623286485 1 11.70816976 -9.475594083 1.212373001 1.000318576 0.453762321 0.346822556 0.156730507 0.204231441 0.53658312 0.092687682 0.022697854 3.35E-10 9.475594083 -0.546556255 EDS(ph)GTFSLGK ddPTM_HeLa_CUDC101_4h_R1 4 EDSGTFSLGK 10 0 G5E9Q4;O75569 G5E9Q4 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 1 0 EDS(0.996)GT(0.004)FSLGK;EDS(1)GTFSLGK;EDS(0.998)GT(0.002)FSLGK;EDS(0.983)GT(0.012)FS(0.005)LGK ;;; 223.77 6.21E-33 459600000 18787.5 14575.3 14936.1 14245.2 16393.4 18090.2 17048.3 15766.6 14259.7 15697.5 TRUE FALSE FALSE 16585.25773 15024.34772 15743.59075 14826.18083 15184.09154 17745.15958 17705.85864 17561.40601 13671.90913 15604.13057 1.062876118 0.96284427 1.008937388 0.950144627 0.973081549 1.137209119 1.134690495 1.125433162 0.876172438 1 13.92964036 -5.250261651 24.80771228 1.014206152 1.132668896 0.576999282 0.054919814 323.1650863 717226.3208 0.005855196 0.014781938 5.62E-06 5.250261651 0.118462744 KPISDNSFS(ph)SDEEQSTGPIK ddPTM_HeLa_CUDC101_4h_R1 2 KPISDNSFSSDEEQSTGPIK 20 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 KPISDNS(0.004)FS(0.918)S(0.076)DEEQS(0.001)TGPIK;KPIS(0.002)DNS(0.026)FS(0.849)S(0.124)DEEQSTGPIK ; 100.79 0.00037397 56974000 6925.7 5906.8 6203.7 6017.2 6663.7 6880.1 6458.9 5998.4 5885.6 6611.6 TRUE FALSE FALSE 6113.879945 6088.781507 6539.090787 6262.607425 6172.132127 6748.873556 6708.021937 6681.23361 5642.993077 6572.273909 0.930253369 0.926434533 0.994951044 0.9528829 0.939116691 1.026870403 1.020654652 1.016578691 0.858605888 1 12.68217689 -5.250152387 24.39023324 0.962672781 1.021296596 0.383912588 0.040415127 392.2677146 847653.7801 0.004378498 0.011046294 5.62E-06 5.250152387 0.058623815 SPS(ph)PLVSLQAVK ddPTM_HeLa_CUDC101_4h_R1 2 SPSPLVSLQAVK 12 0 Q9UPZ3-2;Q9UPZ3 Q9UPZ3-2 HPS5 Hermansky-Pudlak syndrome 5 protein 1 0 S(0.012)PS(0.988)PLVSLQAVK;SPS(1)PLVSLQAVK ; 203.29 1.00E-16 49659000 3925.6 2591.4 1962.28 2413.3 3087.5 2086.98 2096.1 1858.61 2311.28 1965.77 TRUE FALSE FALSE 3465.447119 2671.237962 2068.366792 2511.724805 2859.741276 2047.174334 2176.947279 2070.18665 2216.00806 1954.077513 1.77344404 1.367007166 1.058487588 1.28537624 1.463473817 1.047642338 1.114053698 1.0594189 1.134043069 1 10.93227198 -5.249876076 24.10442587 1.349151888 1.077739811 0.160100351 0.21276849 713.8907317 1488143.177 0.042383604 0.106978577 5.63E-06 5.249876076 -0.271412076 VEANS(ph)PLPK ddPTM_HeLa_CUDC101_4h_R1 1 VEANSPLPK 9 0 Q9H7C4-2;Q9H7C4 Q9H7C4-2 SYNC Syncoilin 1 0 VEANS(1)PLPK 110.98 0.0097392 40523000 7618.7 7028.3 6796.8 6433.8 7566.8 5720.9 5278.7 4990.7 7348.4 6485.7 TRUE FALSE FALSE 6725.647535 7244.833592 7164.255567 6696.198173 7008.612239 5611.783364 5482.301227 5558.821115 7045.495842 6447.122768 1.043201406 1.123731291 1.111232999 1.038633576 1.087091481 0.870432217 0.850348508 0.862217351 1.092812421 1 12.65443974 -5.249077971 22.70640405 1.041024829 0.859934178 0.82367077 0.042981901 84.96758955 156073.3141 0.006891729 0.017396627 5.64E-06 5.249077971 -0.181090651 S(ph)LDGSGSEPAVCEMCGIVGTR ddPTM_HeLa_CUDC101_4h_R1 1 SLDGSGSEPAVCEMCGIVGTR 21 0 Q969R5;H7C228;Q969R5-2;Q969R5-3 Q969R5 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 0 S(1)LDGSGSEPAVCEMCGIVGTR 178.1 6.53E-10 6866500 410.9 368.74 242.37 311.24 401.82 243.73 228.14 292.01 282.77 288.12 TRUE FALSE FALSE 362.7349249 380.1004423 255.4732553 323.9337125 372.1785391 239.0812563 236.9394362 325.2512381 271.1141009 286.4062494 1.266504923 1.32713739 0.891996092 1.131028786 1.299477717 0.834762708 0.827284449 1.135628984 0.946606792 1 8.161919163 -5.248483042 24.74582208 1.136464826 0.922031286 0.225782413 0.160162315 719.0211441 1373283.414 0.022784323 0.057664642 5.64E-06 5.248483042 -0.21443354 EELQQEMAQQS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 EELQQEMAQQSR 12 0 Q9H4E7 Q9H4E7 DEF6 Differentially expressed in FDCP 6 homolog 1 0 EELQQEMAQQS(1)R 86.262 0.026378 3479100 2293.3 1687.2 1903 1913.3 2135 1792.6 1752.2 1657.6 1875.2 1759.5 TRUE FALSE FALSE 2024.48285 1739.180632 2005.881936 1991.332644 1977.505304 1758.409142 1819.782941 1846.294484 1797.903462 1749.034416 1.157486 0.994366158 1.146851039 1.138532567 1.130626868 1.005359944 1.040450048 1.055607864 1.027940586 1 10.77234296 -5.248055646 24.87161227 1.083569764 1.034470364 0.139223503 0.058368805 1466.909191 2726021.454 0.009961723 0.025220389 5.65E-06 5.248055646 -0.0490994 AIEINPDS(ph)AQPYK ddPTM_HeLa_CUDC101_4h_R1 1 AIEINPDSAQPYK 13 0 P50502;H7C3I1;Q3KNR6;Q8NFI4;F6VDH7;Q8IZP2 P50502 ST13;ST13P5;ST13P4 Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4 1 0 AIEINPDS(1)AQPYK 119.62 0.00026221 0 1635.5 1734.8 1554.1 1368.3 1911.5 1284.9 1408.3 1427.4 1582.8 1583.6 TRUE FALSE FALSE 1443.789169 1788.247132 1638.119347 1424.105188 1770.492453 1260.392673 1462.618603 1589.889446 1517.556314 1574.180677 0.917168652 1.13598595 1.04061711 0.904664381 1.124707271 0.800665827 0.92913007 1.009979013 0.964029312 1 10.62038542 -5.248012208 24.99821087 0.984773606 0.914845505 0.161315024 0.089166491 1410.604518 2626206.339 0.012641222 0.032029822 5.65E-06 5.248012208 -0.0699281 RSPSAPAATSSASSSTSSYK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 RSPSAPAATSSASSSTSSYKR 21 2 A0A087X0S7;A0A0C4DH00;A0A087WTU1;A0A0B4J2G4;Q15345-3;Q15345 A0A087X0S7 LRRC41 Leucine-rich repeat-containing protein 41 0 1 RSPSAPAATSSASSSTSSYK(1)R 148.44 1.10E-05 588400 164.88 84.364 173.89 181.28 143.69 0 0 132.19 142.39 196.31 FALSE TRUE FALSE 145.5530163 86.96315484 183.2910194 188.673382 133.090275 0 0 147.2379753 136.5206239 195.1423394 0.745881272 0.445639604 0.939268331 0.966850057 0.682016396 0 0 0.754515784 0.699595097 1 7.608383018 -5.430967838 5.012928341 0.850691114 0.231104534 0.483757655 0.249914811 0.125405277 5.141402008 0.03570883 0.081035356 3.71E-06 5.430967838 -0.619586579 RIPSIVS(ph)SPLNSPLDR ddPTM_HeLa_CUDC101_4h_R1 2 RIPSIVSSPLNSPLDR 16 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 RIPSIVS(0.679)S(0.32)PLNSPLDR;RIPSIVS(0.61)S(0.389)PLNS(0.001)PLDR ; 98.188 0.0026795 66894000 3191.9 3406.3 3096.8 2978.5 3405.1 3761.5 3655.1 3050.5 3446.3 3868.8 TRUE FALSE FALSE 2817.750321 3511.244066 3264.222375 3099.976104 3153.912557 3689.755655 3796.078431 3397.756589 3304.242055 3845.788206 0.732684737 0.913010254 0.848778508 0.806070417 0.820095228 0.95942768 0.98707423 0.883500705 0.859184614 1 11.9090636 -5.246870046 23.98673055 0.86384707 0.947708221 0.243939361 0.070334202 810.0885827 1333711.693 0.014506318 0.036781637 5.66E-06 5.246870046 0.08386115 GVPAGNS(ph)DTEGGQPGR ddPTM_HeLa_CUDC101_4h_R1 4 GVPAGNSDTEGGQPGR 16 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 GVPAGNS(0.934)DT(0.066)EGGQPGR;GVPAGNS(0.965)DT(0.035)EGGQPGR;GVPAGNS(0.588)DT(0.412)EGGQPGR;GVPAGNS(0.919)DT(0.081)EGGQPGR ;;; 222.51 1.56E-32 292677000 1790.85 1473.42 1507.05 1518.17 1816.95 1294.69 1482.93 1049.29 1396.3 1447.93 TRUE FALSE FALSE 1580.929278 1518.814324 1588.525682 1580.087535 1682.917218 1269.995945 1540.127107 1168.736932 1338.743923 1439.317648 1.098388031 1.055232197 1.103665813 1.09780321 1.169246567 0.88235974 1.070039757 0.812007644 0.930124024 1 10.49116931 -5.246448183 24.9895625 1.06356787 0.936326118 0.367156656 0.085629875 668.2686061 1113968.213 0.010592547 0.026883533 5.67E-06 5.246448183 -0.127241752 SPISPLSDAS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 SPISPLSDASK 11 0 A0A5F9ZHZ1;H7C4C2;P51826;P51826-2 A0A5F9ZHZ1 AFF3 AF4/FMR2 family member 3 1 0 SPIS(0.01)PLS(0.01)DAS(0.98)K 82.452 0.035476 9267500 825.15 762.35 871.27 893.35 1058.3 625.25 474.57 925.72 911.96 908.29 TRUE FALSE FALSE 728.4271678 785.8370999 918.3734916 929.7846744 980.2313174 613.324398 492.8743239 1031.100223 874.3686228 902.8874507 0.80677516 0.870359976 1.017151685 1.029790229 1.0856628 0.679292195 0.545886781 1.14200305 0.968413751 1 9.81840235 -5.246274153 24.97663137 0.931695173 0.764743291 0.176064494 0.162338325 1098.152298 1808617.872 0.022930895 0.058213594 5.67E-06 5.246274153 -0.166951882 GSPASPTS(ph)PSDCPPALAPR ddPTM_HeLa_CUDC101_4h_R1 1 GSPASPTSPSDCPPALAPR 19 0 O94885;A0A087WW74 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 0 GS(0.005)PAS(0.119)PT(0.191)S(0.676)PS(0.008)DCPPALAPR 79.317 0.002508 0 819.1 723.6 885.49 666.4 804.87 932.82 839.27 772.85 672.78 734.47 TRUE FALSE FALSE 723.0863397 745.8932583 933.3622679 693.5786724 745.4963436 915.0280127 871.640925 860.82812 645.0477236 730.1013398 0.990391745 1.021629762 1.278400979 0.949975893 1.021086119 1.253289047 1.19386293 1.179052925 0.883504369 1 9.511952917 -5.24613844 0.388159159 0.988310348 1.284039193 0.404872941 0.100261021 2.242257233 0.389627742 0.031158101 0.275939789 5.67E-06 5.24613844 0.295728844 S(ph)FILS(ph)S(ph)HLT(ph)T(ph)HK ddPTM_HeLa_CUDC101_4h_R1 1 SFILSSHLTTHK 12 0 P17019 P17019 ZNF708 Zinc finger protein 708 5 0 S(1)FILS(1)S(1)HLT(1)T(1)HK 52.391 0.0032935 0 441.18 376.19 390.88 224.17 349.85 500.65 470.62 400.13 440.29 401.06 TRUE FALSE FALSE 389.4655492 387.779968 412.0121551 233.3126215 324.0422625 491.1009354 488.771971 445.6791818 422.1410598 398.6744773 0.976901135 0.972673171 1.033455058 0.585220863 0.812799115 1.2318344 1.22599263 1.117902467 1.058861512 1 8.639067438 -5.24611157 24.6234793 0.949769502 1.195318141 0.449376659 0.135134125 535.3104057 859951.5864 0.019765439 0.050175941 5.67E-06 5.24611157 0.245548639 DAQQVEPEGQEKPS(ph)PATVR ddPTM_HeLa_CUDC101_4h_R1 2 DAQQVEPEGQEKPSPATVR 19 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3;A0A2R8Y7F4;A0A2R8YET2;H7C5N8 E7EPN9 PRRC2C Protein PRRC2C 1 0 DAQQVEPEGQEKPS(0.866)PAT(0.134)VR;DAQQVEPEGQEKPS(0.954)PAT(0.046)VR ; 99.13 0.00092109 20617700 3581.7 2846.5 2904.5 3084 2994.6 2811.3 2242.45 1159.41 2936 3453.7 TRUE FALSE FALSE 3161.858556 2934.197291 3061.526056 3209.77885 2773.694324 2757.679136 2328.942048 1291.392548 2814.976837 3433.157239 0.920976913 0.854664406 0.891752356 0.934934996 0.807913571 0.803248714 0.678367428 0.376153045 0.819938221 1 11.74532022 -4.106573879 0.686338541 0.950898018 8.17E-32 0.854827584 0.06357215 0.723995952 0.205276077 0.009357485 0.560746575 7.82E-05 4.106573879 -0.950898018 down S(ph)PSPSFR ddPTM_HeLa_CUDC101_4h_R1 1 SPSPSFR 7 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 0 S(0.995)PS(0.005)PSFR 96.034 0.026501 15067000 884.61 637.03 796.73 841.92 736.31 1042.5 823.05 890.42 836.21 884.87 TRUE FALSE FALSE 780.9173568 656.6561392 839.8036338 876.2571367 681.9938782 1022.616049 854.7953142 991.7818136 801.7410699 879.6067539 0.88780282 0.746533762 0.95474896 0.996191915 0.77533952 1.162583217 0.971792577 1.127528648 0.91147671 1 9.780714871 -5.246048608 24.99965053 0.924930148 1.075750583 0.444001868 0.094017609 734.1459931 1192491.382 0.013626336 0.034597796 5.67E-06 5.246048608 0.150820435 RRPES(ph)APAESSPSK ddPTM_HeLa_CUDC101_4h_R1 1 RRPESAPAESSPSK 14 2 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 0 RRPES(0.999)APAES(0.001)SPSK 78.225 0.0033004 0 438.61 340.56 240.55 458.96 354.57 330.41 278.99 304.86 280.85 284.5 TRUE FALSE FALSE 387.1968007 351.0522499 253.5548606 477.6783726 328.4140775 324.1079798 289.7507378 339.5640301 269.2732441 282.8077813 1.369116503 1.241310434 0.896562532 1.689056681 1.161262522 1.146036287 1.02455009 1.200688427 0.952142274 1 8.143678006 -5.245655086 4.290852745 1.200886361 1.11120189 0.015161756 0.219224658 0.730766667 33.4753887 0.031589471 0.080561394 5.68E-06 5.245655086 -0.089684471 RS(ph)PTVEPSTLPR ddPTM_HeLa_CUDC101_4h_R1 3 RSPTVEPSTLPR 12 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 RS(0.999)PT(0.001)VEPSTLPR;RS(0.996)PT(0.004)VEPSTLPR;RS(0.614)PT(0.34)VEPS(0.023)T(0.023)LPR ;; 179.65 5.48E-08 68155000 5118.8 5503.48 5056.6 5251.49 5503.7 5858.5 5114 5497.8 5490.7 6022.7 TRUE FALSE FALSE 4518.782024 5673.035696 5329.975091 5465.668461 5097.703016 5746.758873 5311.248693 6123.647329 5264.371022 5986.876713 0.754781206 0.947578507 0.890276407 0.912941543 0.851479538 0.959892637 0.8871485 1.02284507 0.879318428 1 12.54758785 -5.245463797 23.83374504 0.887378579 0.949680723 0.163322363 0.067285092 941.9585566 1405287.482 0.01329 0.033742517 5.68E-06 5.245463797 0.062302143 QDGGTAPVASAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 QDGGTAPVASASPK 14 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 QDGGTAPVAS(0.005)AS(0.995)PK;QDGGTAPVAS(0.046)AS(0.954)PK;QDGGTAPVAS(0.01)AS(0.99)PK ;; 115.87 0.00041604 18262000 4085.6 3926.8 3866.2 3288.11 3858.3 4435.25 4031.58 4106.1 3882.97 4018.24 TRUE FALSE FALSE 3606.692161 4047.780054 4075.218467 3422.213338 3573.680896 4350.654996 4187.079391 4573.521827 3722.912333 3994.33933 0.902950867 1.013379115 1.020248439 0.856765802 0.894686355 1.089205157 1.048253302 1.145000825 0.932047086 1 11.96374118 -5.245198184 23.82566282 0.951899003 1.089563156 0.599720666 0.055370351 274.7681851 403080.1718 0.008586302 0.021804904 5.69E-06 5.245198184 0.137664153 LMRVFDESLSMFT(ph)ELQQMR ddPTM_HeLa_CUDC101_4h_R1 1 LMRVFDESLSMFTELQQMR 19 1 H0Y8N5;F5H7P7;Q96BP3-2;Q96BP3 H0Y8N5 PPWD1 Peptidylprolyl isomerase domain and WD repeat-containing protein 1 1 0 LMRVFDESLS(0.002)MFT(0.998)ELQQMR 59.163 0.02657 72752000 836.21 862.54 653.48 623.07 714.15 1026.1 831.43 1047 893.97 836.47 TRUE FALSE FALSE 738.1907314 889.113835 688.8091055 648.4814877 661.4685773 1006.528852 863.4985336 1166.186248 857.1201782 831.4946392 0.887787722 1.069295932 0.828398733 0.779898579 0.795517549 1.210505522 1.038489598 1.402518059 1.030818646 1 9.699563152 -5.245077679 24.34323451 0.924559705 1.199302969 0.556256543 0.123851296 358.1494602 532859.64 0.016992297 0.043164716 5.69E-06 5.245077679 0.274743263 FFQGSQEFLAS(ph)ASASAER ddPTM_HeLa_CUDC101_4h_R1 1 FFQGSQEFLASASASAER 18 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 FFQGS(0.112)QEFLAS(0.887)AS(0.001)ASAER 222.93 4.77E-33 11370000 2076 1365.9 1437.5 1607.9 1633.9 1814.7 1604.4 1564.6 1692.5 1492.8 TRUE FALSE FALSE 1832.654427 1407.98176 1515.215598 1673.477112 1513.370452 1780.087621 1666.282245 1742.70774 1622.734434 1483.920759 1.235008282 0.948825435 1.021089293 1.127740212 1.019845866 1.199584014 1.122891661 1.17439407 1.093545207 1 10.53519834 -5.24456466 24.78523745 1.090005891 1.161350084 0.21093272 0.079547497 1501.912698 2205972.998 0.014589431 0.037099188 5.69E-06 5.24456466 0.071344194 TLSSSS(ph)MDLSR ddPTM_HeLa_CUDC101_4h_R1 1 TLSSSSMDLSR 11 0 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 0 TLSS(0.139)S(0.31)S(0.551)MDLSR 171.32 7.96E-07 80447000 2641.5 2139.8 2069.8 2080.1 2128.3 2653.5 2519.6 2365.8 1919.4 2018.5 TRUE FALSE FALSE 2331.867374 2205.724702 2181.699649 2164.935469 1971.299549 2602.888909 2616.781816 2635.113109 1840.28152 2006.493872 1.162160227 1.099293017 1.087319368 1.078964406 0.98245979 1.297232423 1.304156396 1.313292378 0.917162791 1 10.97046103 -5.244392667 24.00624649 1.075549438 1.304820067 0.737232536 0.069141092 198.5095496 279552.4392 0.009315521 0.023672478 5.70E-06 5.244392667 0.22927063 SFSEDT(ph)LMDGPAR ddPTM_HeLa_CUDC101_4h_R1 2 SFSEDTLMDGPAR 13 0 Q9BRG2;M0QZQ6 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 0 S(0.086)FS(0.374)EDT(0.54)LMDGPAR;S(0.002)FSEDT(0.998)LMDGPAR ; 215.02 1.87E-23 36189000 3905.8 3061.2 3337.5 2753.2 3230.3 4018.1 3749.9 3066.6 3470.9 3465.9 TRUE FALSE FALSE 3447.968045 3155.511944 3517.935345 2865.487396 2992.007205 3941.461437 3894.534899 3415.689348 3327.828033 3445.284673 1.000778854 0.91589295 1.021086987 0.83171281 0.868435409 1.144016188 1.130395677 0.991409905 0.965908002 1 11.75040748 -5.243750918 24.94429144 0.97488647 1.092786098 0.412324659 0.072899324 731.8768643 1032091.516 0.010789823 0.027440009 5.70E-06 5.243750918 0.117899629 LKSPVLSNTTTEPAS(ph)TMSPPPAK ddPTM_HeLa_CUDC101_4h_R1 1 LKSPVLSNTTTEPASTMSPPPAK 23 1 Q9P275;A0A075B784 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36;Ubiquitin carboxyl-terminal hydrolase 1 0 LKSPVLSNTTTEPAS(0.455)T(0.455)MS(0.089)PPPAK 92.289 0.00013079 0 2736.4 2436.9 2376.3 2353.3 2336.9 1901.4 1635.9 1378.9 2436 2658.2 TRUE FALSE FALSE 2415.64334 2511.978001 2504.769966 2449.277746 2164.511543 1865.133963 1698.997211 1535.868402 2335.587049 2642.388908 0.914189177 0.950646588 0.947918741 0.926917964 0.819149496 0.70585142 0.642977726 0.581242374 0.883892239 1 11.3676271 -5.243615119 1.033296646 0.959598152 0.573721681 0.946050962 0.031898301 0.096537693 0.171897174 0.005205205 0.027828366 5.71E-06 5.243615119 -0.385876471 MNGVMFPGNS(ph)PSYTER ddPTM_HeLa_CUDC101_4h_R1 8 MNGVMFPGNSPSYTER 16 0 Q9NY27-2;Q9NY27-3;Q9NY27 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 1 0 MNGVMFPGNS(0.637)PS(0.355)YT(0.009)ER;MNGVMFPGNS(0.97)PS(0.029)YT(0.001)ER;MNGVMFPGNS(0.803)PS(0.091)Y(0.051)T(0.055)ER;MNGVMFPGNS(0.964)PS(0.033)YT(0.003)ER;MNGVMFPGNS(0.992)PS(0.008)YTER;MNGVMFPGNS(0.742)PS(0.239)Y(0.005)T(0.014)ER;MNGVMFPGNS(0.498)PS(0.498)YT(0.003)ER;MNGVMFPGNS(0.968)PS(0.03)YT(0.002)ER ;;;;;;; 239.33 1.39E-43 160262000 18958.9 17598.5 16797.1 17902.5 20642.6 18620.5 19248.4 17841 19445.6 18624.4 TRUE FALSE FALSE 16736.56648 18140.68893 17705.20203 18632.64133 19119.83652 18265.34499 19990.81724 19871.94732 18644.04414 18513.62124 0.904013659 0.979856328 0.956333815 1.006428785 1.032744285 0.986589536 1.079789684 1.073369011 1.007044699 1 14.17629949 -5.243501025 0.730482576 0.955554621 1.088071702 0.508019097 0.034753454 0.65100319 0.492549039 0.007343 0.054228691 5.71E-06 5.243501025 0.132517081 AEPASPDS(ph)PKGSSETETEPPVALAPGPAPTR ddPTM_HeLa_CUDC101_4h_R1 1 AEPASPDSPKGSSETETEPPVALAPGPAPTR 31 1 F5GWT5;A0A6E1WCP9;P11474-2;P11474 F5GWT5 ESRRA Steroid hormone receptor ERR1 1 0 AEPAS(0.002)PDS(0.916)PKGS(0.037)S(0.037)ET(0.009)ET(0.001)EPPVALAPGPAPTR 92.822 1.36E-08 13104000 735.71 845.15 873.88 757 790.05 592.1 578.73 464.3 830.54 736.62 TRUE FALSE FALSE 649.4711891 871.1880698 921.1245961 787.873732 731.7695855 580.806679 601.05181 517.1540352 796.3047897 732.2385515 0.886966669 1.189759905 1.257956979 1.075979584 0.999359545 0.793193254 0.820841526 0.706264419 1.08749367 1 9.516169922 -5.243253601 4.862678874 1.001441428 0.774862977 0.531634951 0.115855888 0.165007593 11.1230377 0.019607786 0.049509689 5.71E-06 5.243253601 -0.226578451 NSWDS(ph)PAFSNDVIR ddPTM_HeLa_CUDC101_4h_R1 1 NSWDSPAFSNDVIR 14 0 A0A2R8Y7T6;A0A3B3IRZ4;Q6DN90;Q6DN90-3;A0A2R8Y695;A0A3B3IU98;A0A0C4DGT3;Q6DN90-2 A0A2R8Y7T6 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 0 NS(0.246)WDS(0.754)PAFSNDVIR 130.47 0.00082992 36103000 3946.6 3448.4 3075.1 3497.4 3536.1 3161.9 2835 2885.5 3210.1 3010.4 TRUE FALSE FALSE 3483.985531 3554.641117 3241.349208 3640.039089 3275.248948 3101.592026 2944.3469 3213.973656 3077.778319 2992.494007 1.16424144 1.187852376 1.083159799 1.216389767 1.094488056 1.036457222 0.983910709 1.074011727 1.02849941 1 11.54713264 -5.242350859 5.040879291 1.099889956 1.025631018 0.215570623 0.067038362 0.294191845 22.23937207 0.01169813 0.029488532 5.72E-06 5.242350859 -0.074258937 S(ph)TSESSASFPR ddPTM_HeLa_CUDC101_4h_R1 1 STSESSASFPR 11 0 Q5T011-5;Q5T011 Q5T011-5 SZT2 Protein SZT2 1 0 S(0.987)T(0.012)S(0.001)ESSASFPR 112.94 0.0061494 5724500 2253.9 1718.8 1833.8 2274.5 1723.6 2226.8 1884.8 1543.8 1925.2 2057.2 TRUE FALSE FALSE 1989.701259 1771.754191 1932.940775 2367.263941 1596.453462 2184.3275 1957.497367 1719.539952 1845.842441 2044.963683 0.97297633 0.866398854 0.945220099 1.157606837 0.780675704 1.068149776 0.957228426 0.840865765 0.90262847 1 10.99785951 -5.241201742 0.009004633 1.895688144 1.32E-05 0 0.106545051 12464.77646 25.46939707 2564.07862 2800.68199 5.74E-06 5.241201742 -1.895674993 YSQSAPGS(ph)PVSAQPVIMAVPPRPSSLVAK ddPTM_HeLa_CUDC101_4h_R1 1 YSQSAPGSPVSAQPVIMAVPPRPSSLVAK 29 1 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 1 0 Y(0.002)S(0.012)QS(0.139)APGS(0.589)PVS(0.255)AQPVIMAVPPRPS(0.002)S(0.002)LVAK 41.27 0.034857 8754400 1104.4 879.75 940.46 812.21 983.33 1178.3 1032.6 1042.2 880.28 1111.4 TRUE FALSE FALSE 974.9439062 906.8540547 991.3041123 845.3354345 910.791705 1155.825891 1072.427728 1160.839835 843.9944858 1104.789343 0.882470411 0.820838887 0.897278851 0.765155312 0.824403051 1.046195727 0.970707886 1.050734099 0.763941552 1 10.10955559 -5.241096035 24.64997074 0.909437858 1.01736211 0.349617946 0.083824581 786.2170685 952654.8828 0.012452637 0.031704313 5.74E-06 5.241096035 0.107924253 DIS(ph)LDSELHDLR ddPTM_HeLa_CUDC101_4h_R1 2 DISLDSELHDLR 12 0 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 DIS(1)LDSELHDLR;DIS(1)LDSELHDLR ; 130.95 0.00098335 11091700 7273.6 5210.4 5105.2 4490.4 6656.2 5797.5 5178 2134.15 6956.5 6386.1 TRUE FALSE FALSE 6420.999634 5370.926248 5381.202554 4673.537921 6165.185387 5686.922347 5377.717195 2377.093009 6669.750126 6348.115193 1.011481273 0.846066287 0.847685083 0.736208745 0.971183603 0.895844227 0.847136044 0.374456502 1.050666209 1 12.63211259 -4.10638765 1.714832492 0.957330249 5.88E-22 0.738431176 0.094871085 0.584416697 1.215400451 0.015270525 1.031816623 7.83E-05 4.10638765 -0.957330249 down VCMT(ph)VDSLVNK ddPTM_HeLa_CUDC101_4h_R1 1 VCMTVDSLVNK 11 0 P40126;P40126-2 P40126 DCT L-dopachrome tautomerase 1 0 VCMT(0.887)VDS(0.113)LVNK 88.596 0.0029019 0 982.45 773.11 740.44 914.41 936.31 1021.7 946.8 929.9 1064.5 893.07 TRUE FALSE FALSE 867.2887003 796.9286027 780.4704261 951.7035922 867.2402767 1002.212775 983.3183932 1035.756057 1020.620859 887.7579799 0.976942725 0.89768678 0.879147745 1.072030456 0.976888179 1.128925673 1.107642415 1.166709937 1.149661149 1 9.794022613 -5.240945273 1.494419608 0.975859091 1.148945816 0.400035447 0.076317806 0.217028673 0.896424285 0.008210004 0.031677764 5.74E-06 5.240945273 0.173086725 RTQS(ph)LSALPK ddPTM_HeLa_CUDC101_4h_R1 1 RTQSLSALPK 10 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 RT(0.003)QS(0.968)LS(0.028)ALPK 106.26 0.020028 24534000 1928.6 1794.4 2237.2 2327.2 2661 2697.1 3017.2 2850.3 2480.8 2255 TRUE FALSE FALSE 1702.532432 1849.683337 2358.149799 2422.113275 2464.703331 2645.657311 3133.574415 3174.766631 2378.540374 2241.58716 0.75952096 0.825166815 1.052000048 1.080534952 1.099534908 1.180260736 1.397926644 1.416303005 1.061096538 1 11.13030488 -5.24024775 0.725988321 0.88432217 1.490029435 0.765564052 0.096749483 0.386182483 0.28722571 0.019668742 0.14663545 5.75E-06 5.24024775 0.605707266 VS(ph)EVEEEKEPVPQPLPSDDTR ddPTM_HeLa_CUDC101_4h_R1 1 VSEVEEEKEPVPQPLPSDDTR 21 1 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 1 0 VS(1)EVEEEKEPVPQPLPSDDTR 56.468 0.013481 4678100 1041.8 798.06 864.33 986.03 831.36 1239.8 1279.1 988.57 831.72 951.37 TRUE FALSE FALSE 919.6817833 822.6472827 911.0582943 1026.244565 770.0322291 1216.152881 1328.435315 1101.104813 797.4361496 945.7112089 0.972476349 0.869871558 0.963357826 1.085156394 0.814236124 1.285966444 1.404694481 1.164314013 0.843213173 1 9.885255886 -5.239601712 23.26646368 0.973477428 1.296962118 0.72001094 0.097807201 116.7816087 124421.6025 0.011382325 0.028980931 5.76E-06 5.239601712 0.323484691 APSLT(ph)NDEVEEFR ddPTM_HeLa_CUDC101_4h_R1 2 APSLTNDEVEEFR 13 0 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 0 APS(0.102)LT(0.898)NDEVEEFR;APS(0.388)LT(0.612)NDEVEEFR ; 185.86 2.49E-10 28118000 501.7 474.09 475.32 680.99 457.7 751.01 614.17 595.63 670.09 674.57 TRUE FALSE FALSE 442.8914865 488.696151 501.017237 708.7637157 423.9363829 736.6857355 637.8587426 663.4341116 642.4686066 670.5576276 0.660482363 0.728790682 0.74716507 1.056976592 0.63221469 1.098616592 0.951236279 0.989376728 0.958110951 1 9.389217512 -5.239482254 24.94235191 0.825327989 1.006892501 0.274392181 0.139110096 964.9392867 1096127.866 0.022409083 0.057082218 5.76E-06 5.239482254 0.181564512 T(ph)TPDQELVPASEPVWERPWSVEEIRR ddPTM_HeLa_CUDC101_4h_R1 1 TTPDQELVPASEPVWERPWSVEEIRR 26 2 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 A0A0A0MR88 FAM21C WASH complex subunit FAM21C 1 0 T(0.735)T(0.265)PDQELVPASEPVWERPWSVEEIRR 57.838 0.0049173 32136000 1524.7 1131.5 1165.4 1384.9 1473.7 1119.2 1081 1022 1140.3 1166.2 TRUE FALSE FALSE 1345.976977 1166.360174 1228.405049 1441.382208 1364.988087 1097.853125 1122.694532 1138.340349 1093.296351 1159.263391 1.161062264 1.006121804 1.059642752 1.243360413 1.177461566 0.947026477 0.968455091 0.981951434 0.943095728 1 10.17899268 -5.239343045 24.58745854 1.089769335 0.966075389 0.282566483 0.086289982 653.9553269 727680.5185 0.01243032 0.03166179 5.76E-06 5.239343045 -0.123693946 HSEEAEFT(ph)PPLKCS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 HSEEAEFTPPLKCSPK 16 1 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 2 0 HS(0.003)EEAEFT(0.997)PPLKCS(1)PK 75.912 0.033428 14517000 2647.1 2298.2 2541 2406.1 2794.9 2234.1 2193 1985.3 2872.4 2461.9 TRUE FALSE FALSE 2336.810951 2369.004818 2678.374146 2504.231158 2588.725795 2191.488265 2277.584745 2211.298527 2753.998456 2447.256509 0.954869644 0.968024728 1.094439482 1.023281029 1.057807298 0.895487766 0.930668582 0.903582652 1.125341151 1 11.25694961 -5.238765072 24.85607924 0.994308779 0.911988548 0.37856466 0.05919262 609.1768141 667792.1209 0.006751352 0.017199922 5.77E-06 5.238765072 -0.082320231 S(ph)GYSSPGSPGTPGSR ddPTM_HeLa_CUDC101_4h_R1 1 SGYSSPGSPGTPGSR 15 0 I3L170;A0A0G2JQJ7;A0A0G2JPD5;A0A0G2JS76;A0A0G2JMX7;P10636-3;P10636-2;P10636-4;P10636-6;P10636-5;P10636-7;P10636-8;P10636;P10636-9 I3L170 MAPT Microtubule-associated protein;Microtubule-associated protein tau 1 0 S(0.802)GYS(0.092)S(0.092)PGS(0.013)PGTPGSR 147.7 0.00027135 8733800 2385.3 2008.2 2515 2172.6 2734.6 1921.2 1902.6 1946.2 2550.1 2344.2 TRUE FALSE FALSE 2105.69875 2070.070262 2650.968507 2261.208019 2532.874006 1884.556311 1975.983919 2167.747541 2444.983799 2330.256594 0.903633855 0.888344342 1.137629441 0.970368681 1.086950687 0.808733388 0.847968384 0.930261305 1.049233722 1 11.18627311 -5.238731237 24.99407081 0.971377532 0.860885764 0.341974182 0.081891469 830.2799381 913859.0142 0.01155007 0.02942482 5.77E-06 5.238731237 -0.110491768 S(ph)IGVSNFNHR ddPTM_HeLa_CUDC101_4h_R1 1 SIGVSNFNHR 10 0 B4DK69;P52895;S4R3P0 B4DK69 AKR1C2 Aldo-keto reductase family 1 member C2 1 0 S(0.999)IGVS(0.001)NFNHR 81.239 0.0032607 0 1773.3 1887.7 1164 1792.9 4404.1 5768.1 5203.8 6020.6 6034.3 7545.9 TRUE FALSE FALSE 1565.436462 1945.8578 1226.929361 1866.022212 4079.218317 5658.083103 5404.512309 6705.960768 5785.5636 7501.016651 0.208696572 0.259412542 0.163568409 0.24876924 0.543822059 0.754308831 0.720503974 0.894006917 0.771303927 1 12.87287043 -5.238023099 4.068144931 0.520077234 0.789567889 0.234132106 0.259792708 0.423741345 16.31992271 0.052447463 0.135689642 5.78E-06 5.238023099 0.269490655 NPQMPQYSSPQPGSALS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 NPQMPQYSSPQPGSALSPR 19 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 NPQMPQYSSPQPGS(0.295)ALS(0.704)PR;NPQMPQYSSPQPGS(0.044)ALS(0.956)PR ; 208.87 3.58E-24 42802000 5009.42 3689.39 3861.7 3524.7 4096.8 3076.18 3290.12 2394.12 4331.15 4220.51 TRUE FALSE FALSE 4422.223381 3803.055733 4070.475183 3668.452501 3794.587226 3017.506992 3417.021031 2666.656943 4152.618164 4195.406219 1.054063218 0.90648093 0.970221945 0.87439745 0.904462412 0.719240721 0.814467265 0.635613527 0.989801213 1 12.03459479 -5.237319124 0.519007922 1.026729284 0.608946853 0.818211272 0.053187547 0.494202923 0.162243133 0.011599685 0.104917098 5.79E-06 5.237319124 -0.417782431 SAS(ph)PTVPR ddPTM_HeLa_CUDC101_4h_R1 1 SASPTVPR 8 0 K7EQ87;K7EKI0;Q92817 K7EQ87 EVPL Envoplakin 1 0 S(0.006)AS(0.497)PT(0.497)VPR 109.44 0.011859 121860000 5378.6 4743.2 5317.8 4730 5645.6 4504.1 4032.8 4397.2 5081.9 4897.9 TRUE FALSE FALSE 4748.128661 4889.33237 5605.296353 4922.909845 5229.135336 4418.191797 4188.346447 4897.759474 4872.421931 4868.767073 0.975221979 1.004223923 1.151276344 1.011120428 1.074016328 0.90745598 0.860247858 1.005954773 1.000750674 1 12.24934077 -5.236623999 24.63071822 1.008510144 0.91812235 0.351556167 0.060923668 631.5519265 626850.9001 0.00887566 0.022618976 5.80E-06 5.236623999 -0.090387794 RVS(ph)GDAAQDLDR ddPTM_HeLa_CUDC101_4h_R1 1 RVSGDAAQDLDR 12 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 RVS(1)GDAAQDLDR 88.311 0.012638 20923000 1338.7 1450.4 1279.4 1526.6 1780.4 1083.1 995.73 1071.8 1284.3 1572.8 TRUE FALSE FALSE 1181.779615 1495.085105 1348.568234 1588.861347 1649.063439 1062.441672 1034.13564 1193.80938 1231.36061 1563.444916 0.755881837 0.956276163 0.862562039 1.016256685 1.054762737 0.679551714 0.661446802 0.763576233 0.787594496 1 10.61051267 -5.235286078 24.49092997 0.905971942 0.697517047 0.52134212 0.094913405 444.9693033 416684.9371 0.015865956 0.040434489 5.82E-06 5.235286078 -0.208454895 SS(ph)PGAVAGLSNAPGTPR ddPTM_HeLa_CUDC101_4h_R1 1 SSPGAVAGLSNAPGTPR 17 0 V9GYB2;U3KPY3;Q9BWG4-2;Q9BWG4 V9GYB2 SSBP4 Single-stranded DNA-binding protein 4 1 0 S(0.056)S(0.944)PGAVAGLSNAPGTPR 229.02 2.16E-33 64924000 1014.2 893.7 939.12 990.43 1141.1 771.77 798.59 742.38 1068.1 913.17 TRUE FALSE FALSE 895.3170134 921.2338377 989.8916679 1030.824016 1056.923326 757.0497731 829.3918838 826.8895384 1024.072466 907.7384242 0.98631609 1.014867073 1.090503213 1.135595882 1.164347898 0.833995513 0.9136904 0.910933719 1.128158111 1 9.826132817 -5.235026895 24.9903147 1.023280742 0.888954927 0.508722337 0.073571323 596.956488 564812.9113 0.010726115 0.027338441 5.82E-06 5.235026895 -0.134325815 RSTVNEK(ac)PK ddPTM_HeLa_CUDC101_4h_R1 1 RSTVNEKPK 9 2 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 0 1 RSTVNEK(1)PK 72.531 0.039692 0 328.67 275.01 189.1 313.84 270.99 264.34 286.82 163.1 160.77 106.63 FALSE TRUE FALSE 290.1438008 283.4827321 199.323318 326.6397517 250.9996076 259.2981549 297.8827435 181.6666447 154.1429926 105.99576 2.73731516 2.674472376 1.880483879 3.081630357 2.368015547 2.446306861 2.810326974 1.713904827 1.454237344 1 6.727862746 -9.292285573 0.888396322 0.94622181 2.494686562 0.578789259 0.414769183 0.282560252 0.377865678 0.297915884 0.070008803 5.10E-10 9.292285573 1.548464753 DQEPKPS(ph)PEPAAVSR ddPTM_HeLa_CUDC101_4h_R1 2 DQEPKPSPEPAAVSR 15 1 Q9H7S9 Q9H7S9 ZNF703 Zinc finger protein 703 1 0 DQEPKPS(0.995)PEPAAVS(0.005)R;DQEPKPS(0.997)PEPAAVS(0.003)R ; 174.35 2.28E-06 25000000 2085.44 2095.08 2095.61 2136.7 1984.88 1813.68 1441.99 1446.88 1776.09 2212.67 TRUE FALSE FALSE 1840.987885 2159.626932 2208.905015 2223.843862 1838.459357 1779.087076 1497.608037 1611.586971 1702.878818 2199.50894 0.836999501 0.981867767 1.004271897 1.011063797 0.835849913 0.808856488 0.680882905 0.732703078 0.774208637 1 11.10296575 -5.23496419 1.895429223 0.937512943 0.710959162 0.562540708 0.077420505 0.182227005 1.245372705 0.011201613 0.037086534 5.82E-06 5.23496419 -0.226553781 RSVSDNDIR ddPTM_HeLa_CUDC101_4h_R1 2 RSVSDNDIR 9 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 0 ; ; 125.68 0.0045271 21421800 4611.6 4055.3 4726.1 4249.1 4379 3894 4245.3 3770 4606 3524.4 FALSE FALSE TRUE 4071.035239 4180.238986 4981.607262 4422.396664 4055.969894 3819.728438 4409.042643 4199.161561 4416.13873 3503.436712 1.162011925 1.193182389 1.421920152 1.262302427 1.157711763 1.090280417 1.258490735 1.198583536 1.2605162 1 11.77455512 -8.400921251 0.791197838 1.015321339 1.224379924 0 0.112582178 0.370238461 0.48730567 0.037080507 0.020084916 3.97E-09 8.400921251 0.209058585 QQDLHLES(ph)PQRQPEYSPESPR ddPTM_HeLa_CUDC101_4h_R1 2 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 QQDLHLES(0.996)PQRQPEY(0.002)S(0.002)PES(0.001)PR;QQDLHLES(0.991)PQRQPEY(0.002)S(0.006)PES(0.001)PR ; 53.777 0.016295 32506000 6755.9 6487.5 5955.2 6125.8 6921.2 5533.6 5277.9 4614.2 7055.9 6547.1 TRUE FALSE FALSE 5963.983643 6687.372185 6277.156125 6375.636602 6410.636865 5428.0558 5481.470371 5139.461877 6765.052816 6508.157558 0.916385873 1.027536922 0.964505864 0.979637715 0.985015622 0.834038782 0.842246108 0.789695368 1.039472809 1 12.66803346 -5.234706382 6.996270649 0.968033862 0.823243814 0.792589013 0.037896715 0.075004784 14.45909214 0.005358756 0.013489379 5.82E-06 5.234706382 -0.144790048 SATT(ph)TGSPGTEK ddPTM_HeLa_CUDC101_4h_R1 1 SATTTGSPGTEK 12 0 A0A1B0GUI1;Q6GYQ0-3;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 SAT(0.011)T(0.881)T(0.101)GS(0.006)PGTEK 122.46 0.014283 38680000 6054.7 2055.2 5560.8 5464.4 3263.1 3165.1 3521.8 1373 5433.5 6498.5 TRUE FALSE FALSE 5344.977244 2118.518276 5861.433669 5687.261851 3022.387614 3104.730991 3657.637006 1529.29677 5209.52883 6459.846633 0.827415502 0.327951791 0.907364215 0.880401993 0.467872968 0.480619923 0.566211121 0.236738867 0.806447757 1 12.6572842 -5.234526016 0.194465618 1.080273965 1.28E-15 0.431464435 0.190923728 5.615737346 0.300600287 0.313363245 1.570653994 5.83E-06 5.234526016 -1.080273965 S(ph)APAMQSSGSFNYAR ddPTM_HeLa_CUDC101_4h_R1 1 SAPAMQSSGSFNYAR 15 0 Q8WX93-3;Q8WX93;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 S(1)APAMQSSGSFNYAR 127.18 0.00012767 0 346.12 216.07 362.81 183.29 303.83 198.44 153.01 233.97 239.8 174 TRUE FALSE FALSE 305.5483383 222.7268606 382.424606 190.7653584 281.4170662 194.6550876 158.911647 260.6041991 229.9153425 172.9650403 1.766532346 1.287698718 2.210993652 1.102912809 1.627017031 1.125401337 0.918750094 1.506687124 1.329259035 1 7.434336659 -5.233932466 23.80494105 1.424712588 1.157126473 0.111094009 0.356068575 850.2299773 735799.9565 0.056238611 0.143333216 5.84E-06 5.233932466 -0.267586115 STGGAPTFNVT(ph)VTK ddPTM_HeLa_CUDC101_4h_R1 2 STGGAPTFNVTVTK 14 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 1 0 STGGAPTFNVT(0.99)VT(0.01)K;STGGAPTFNVT(0.998)VT(0.002)K ; 203.52 2.36E-16 59625000 3974.4 3802.6 3493.9 3070.6 3203.6 4181.3 3828.8 3388 2894.08 3399.6 TRUE FALSE FALSE 3508.526857 3919.753599 3682.790802 3195.83234 2967.27681 4101.548669 3976.478099 3773.676225 2774.784797 3379.379028 1.038216438 1.159903511 1.089783292 0.945686268 0.878053863 1.213698918 1.176688991 1.116677411 0.821093099 1 11.72254246 -5.233386726 24.99621096 1.0212221 1.16978851 0.386689564 0.0978383 533.6319436 475490.1116 0.0109781 0.027983389 5.84E-06 5.233386726 0.14856641 SHNVAAGS(ph)YEAPLPPGS(ph)FHGDFAYGTYR ddPTM_HeLa_CUDC101_4h_R1 1 SHNVAAGSYEAPLPPGSFHGDFAYGTYR 28 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 2 0 S(0.324)HNVAAGS(0.621)Y(0.058)EAPLPPGS(0.918)FHGDFAY(0.009)GT(0.06)Y(0.009)R 47.683 0.020816 5769800 432.61 496.66 376.21 414.3 604.68 684.92 850.22 663.44 544.7 514.89 TRUE FALSE FALSE 381.9001116 511.9615059 396.5490506 431.1969448 560.0739611 671.8562922 883.0132702 738.9633279 522.2472354 511.8274114 0.746150173 1.000261992 0.77477103 0.842465517 1.094263317 1.312661802 1.725216842 1.443774428 1.020358081 1 8.999513604 -5.233332256 1.887632346 0.877116665 1.584338988 0.838987092 0.118883424 0.095158348 0.644693381 0.018187572 0.060450033 5.84E-06 5.233332256 0.707222323 IHLQGQT(ph)LS(ph)NPSLCEDPFT(ph)LDEKK ddPTM_HeLa_CUDC101_4h_R1 1 IHLQGQTLSNPSLCEDPFTLDEKK 24 1 A0A087WXL3;O75417-2;O75417 A0A087WXL3 POLQ DNA polymerase theta 3 0 IHLQGQT(0.993)LS(0.961)NPS(0.055)LCEDPFT(0.991)LDEKK 41.434 0.0030191 0 110.64 0 162.05 78.681 175.9 186.29 281.17 173.69 157.63 148.31 TRUE FALSE FALSE 97.67094692 0 170.8109132 81.88995127 162.9242074 182.7368286 292.0148211 193.4621675 151.1324247 147.4278455 0.662499995 0 1.15860686 0.555457831 1.1051115 1.239500096 1.980730438 1.312249846 1.025128083 1 7.20386523 -5.232688038 2.021055162 0.777520187 1.636731846 0.500312562 0.350952792 0.204101848 1.59427961 0.050054866 0.160367085 5.85E-06 5.232688038 0.859211658 S(ph)SSEDAESLAPR ddPTM_HeLa_CUDC101_4h_R1 1 SSSEDAESLAPR 12 0 Q4G0J3;Q4G0J3-3;H0YA82 Q4G0J3 LARP7 La-related protein 7 1 0 S(0.379)S(0.379)S(0.242)EDAESLAPR 119.21 0.0035129 79286000 1049.8 931.43 882.86 1340.5 1281 1325.6 1450.8 1360.8 1260.3 1224 TRUE FALSE FALSE 926.7440354 960.1262543 930.5900821 1395.171384 1186.503182 1300.316389 1506.757842 1515.707971 1208.349901 1216.719594 0.761674292 0.789110539 0.764835289 1.146666324 0.975165674 1.068706706 1.238377232 1.245733182 0.9931211 1 10.24878101 -5.230003919 0.895806359 0.874163875 1.277358024 0.605656571 0.108885424 0.456827769 0.570594188 0.020724843 0.129658315 5.89E-06 5.230003919 0.403194149 TSNTLEKDLDLLASVPS(ph)PSSSGSR ddPTM_HeLa_CUDC101_4h_R1 2 TSNTLEKDLDLLASVPSPSSSGSR 24 1 A0A087WV97;Q8WU79-3;Q8WU79-2;Q8WU79 A0A087WV97 SMAP2 Stromal membrane-associated protein 2 1 0 TSNTLEKDLDLLAS(0.036)VPS(0.379)PS(0.326)S(0.132)S(0.027)GS(0.099)R;TSNTLEKDLDLLAS(0.003)VPS(0.944)PS(0.025)S(0.01)S(0.01)GS(0.01)R ; 87.671 2.98E-05 27464000 2364.2 3128.8 2767.9 2618.2 5353.7 3326.6 4106 4763.4 3328.3 2981.8 TRUE FALSE FALSE 2087.07206 3225.194619 2917.541046 2724.981513 4958.768217 3263.150647 4264.369795 5305.646202 3191.106065 2964.064121 0.704125139 1.088098802 0.984304296 0.919339596 1.672962532 1.100904203 1.43869013 1.78999036 1.076598189 1 11.53336094 -5.229770312 0.598650163 0.863353293 1.772715935 0.560833629 0.217021641 0.73185161 0.336309788 0.043093225 0.371695379 5.89E-06 5.229770312 0.909362642 TVSSPPTS(ph)PRPGSAATVSASTSNIIPPR ddPTM_HeLa_CUDC101_4h_R1 1 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 1 0 T(0.118)VS(0.036)S(0.084)PPT(0.203)S(0.506)PRPGS(0.029)AAT(0.006)VS(0.002)AS(0.005)T(0.005)S(0.005)NIIPPR 42.472 0.032478 104550000 588.88 529.91 329.43 506.55 558.74 370.16 349.94 358.68 511.68 363.29 TRUE FALSE FALSE 519.8523791 546.235899 347.2399823 527.2092985 517.5228634 363.0998147 363.437303 399.5106814 490.5883338 361.1291349 1.439519354 1.512577763 0.961539651 1.459891345 1.43306871 1.005456995 1.006391531 1.106282055 1.358484504 1 8.496371007 -5.229344507 24.61274508 1.24897289 1.036078264 0.268400852 0.186418636 803.2964409 616026.2032 0.031341866 0.079898609 5.90E-06 5.229344507 -0.212894626 SRIPS(ph)PLQPEMQGTPDDEPSEPEPSPSTLIYR ddPTM_HeLa_CUDC101_4h_R1 2 SRIPSPLQPEMQGTPDDEPSEPEPSPSTLIYR 32 1 Q96GY3;K7EMY4 Q96GY3 LIN37 Protein lin-37 homolog 1 0 S(0.127)RIPS(0.676)PLQPEMQGT(0.095)PDDEPS(0.095)EPEPS(0.004)PS(0.001)T(0.001)LIY(0.001)R;S(0.027)RIPS(0.486)PLQPEMQGT(0.486)PDDEPSEPEPSPSTLIYR ; 75.479 4.21E-06 0 1296.72 1184.55 900.59 1211.97 1186.4 1092.99 785.85 1123.33 1196.53 1144.61 TRUE FALSE FALSE 1144.720447 1221.044581 949.2786195 1261.399375 1098.881636 1072.143037 816.1604977 1251.205347 1147.208527 1137.801809 1.006080706 1.073161048 0.83430929 1.108628379 0.965793539 0.942293314 0.717313412 1.099668973 1.008267449 1 10.15203356 -5.229065576 3.501926008 1.00190715 0.895130951 0.098035004 0.109559768 0.311105856 8.005527026 0.013725822 0.036644658 5.90E-06 5.229065576 -0.106776199 VLDDVSIRS(ph)PETK ddPTM_HeLa_CUDC101_4h_R1 2 VLDDVSIRSPETK 13 1 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 VLDDVSIRS(1)PETK;VLDDVSIRS(0.999)PET(0.001)K ; 79.337 0.018284 149654000 10683.2 10380.6 10860.8 10041.9 10656.8 10392.8 8679.9 4748.7 10412.1 11127.3 TRUE FALSE FALSE 9430.931491 10700.41398 11447.9677 10451.45209 9870.669095 10194.57466 9014.686651 5289.272813 9982.908831 11061.11432 0.852620379 0.967390235 1.034974177 0.944882385 0.892375651 0.921658918 0.814989013 0.478186253 0.902522887 1 13.43320911 -4.10491434 1.580878141 0.938783998 0.159491986 0.886863965 0.049785475 0.47302206 0.815134206 0.009272166 0.635121169 7.85E-05 4.10491434 -0.779292012 down MVWDS(ph)QAS(ph)EHFFEY(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 MVWDSQASEHFFEYK 15 0 H0YDL6;H0YCC4;H0YC89;Q9BWS9-3;Q9BWS9;Q9BWS9-2 H0YDL6 CHID1 Chitinase domain-containing protein 1 3 0 MVWDS(1)QAS(1)EHFFEY(1)K 44.968 0.03652 35137000 4191.7 3695.6 3811.1 3378 4013.4 4105.7 3847.4 3723.2 4348 3820.9 TRUE FALSE FALSE 3700.35528 3809.457056 4017.139594 3515.769441 3717.339478 4027.390613 3995.795507 4147.034038 4168.7736 3798.173117 0.974246083 1.002970886 1.057650473 0.925647498 0.978717758 1.060349407 1.052030906 1.091849663 1.097573352 1 11.89108995 -5.228922325 6.62638283 0.988793497 1.067033256 0.224538068 0.046989273 0.117688628 17.3193061 0.004464339 0.011310339 5.90E-06 5.228922325 0.078239759 ISMPDIDLNLT(ph)GPK ddPTM_HeLa_CUDC101_4h_R1 2 ISMPDIDLNLTGPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ISMPDIDLNLT(1)GPK;ISMPDIDLNLT(1)GPK ; 157.58 0.00030812 102207000 10517.9 8178.4 7870.7 7786.9 7905.1 7336.5 7143.2 2465.4 8850 8774.1 TRUE FALSE FALSE 9285.007706 8430.36681 8296.21385 8104.48344 7321.956522 7196.568486 7418.715617 2746.051171 8485.199254 8721.911263 1.06456113 0.96657333 0.951192187 0.929209573 0.839489912 0.825113701 0.850583707 0.314845117 0.972860076 1 13.0904286 -4.103906652 0.700293743 1.016433593 1.30E-32 0.820035916 0.084446486 1.002121712 0.295510599 0.013910916 0.846014438 7.87E-05 4.103906652 -1.016433593 down SKS(ph)DSYTLDPDTLR ddPTM_HeLa_CUDC101_4h_R1 1 SKSDSYTLDPDTLR 14 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 S(0.246)KS(0.745)DS(0.006)Y(0.001)T(0.001)LDPDTLR 74.133 0.021328 199370000 4992.1 3969.1 4399.9 4083.8 4510.1 5028.3 4695.8 4297.2 4580.9 4799.2 TRUE FALSE FALSE 4406.933606 4091.383266 4637.771903 4250.355016 4177.398908 4932.393555 4876.918579 4786.375878 4392.073363 4770.654145 0.92375877 0.85761473 0.972145907 0.890937571 0.875644887 1.033902984 1.022274604 1.003295509 0.920643842 1 12.21997138 -5.228515625 24.98405259 0.944949712 1.020069407 0.445233257 0.045426277 640.9247514 486362.194 0.007566629 0.019289582 5.91E-06 5.228515625 0.075119695 RTAQEVETYRR ddPTM_HeLa_CUDC101_4h_R1 2 RTAQEVETYRR 11 2 P17844-2;P17844;J3KTA4;J3QR02;J3KRX8;J3QRQ7;J3KTQ4 P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 0 0 ; ; 131.09 0.00089952 8706600 1732.55 1546.46 1720.46 1550.44 1996.76 1483.89 1398.98 1974.1 1534.44 1112.1 FALSE FALSE TRUE 1529.463115 1594.1046 1813.473272 1613.673645 1849.462993 1455.587271 1452.939127 2198.823564 1471.189734 1105.48518 1.383522044 1.44199545 1.640432007 1.459697221 1.672987596 1.316695418 1.31429996 1.98901225 1.330809097 1 10.11046397 -8.701387493 0.383880455 0.895441167 1.578256054 0.301935383 0.210332036 0.964017219 0.258294401 0.2729713 0.076532231 1.99E-09 8.701387493 0.682814887 YQPLASTAS(ph)DNDFVTPEPR ddPTM_HeLa_CUDC101_4h_R1 1 YQPLASTASDNDFVTPEPR 19 0 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 0 YQPLAS(0.039)T(0.208)AS(0.748)DNDFVT(0.005)PEPR 75.017 0.010185 63073000 2918 2061.3 2054.4 2022.9 2501.4 2063.2 2010 1750.9 2155.8 2100.1 TRUE FALSE FALSE 2575.956463 2124.80621 2165.467078 2105.402606 2316.876705 2023.847898 2087.526373 1950.215379 2066.937012 2087.608512 1.233926979 1.01781833 1.037295578 1.008523674 1.109823366 0.969457581 0.999960654 0.934186351 0.990098 1 11.02763547 -5.228493427 0.673546246 1.101762501 0.932421546 0.08418688 0.077071688 1.418018362 0.869731402 0.017995209 0.144383799 5.91E-06 5.228493427 -0.169340955 MGQAPSQSLLPPAQDQPRS(ph)PVPSAFSDQSR ddPTM_HeLa_CUDC101_4h_R1 4 MGQAPSQSLLPPAQDQPRSPVPSAFSDQSR 30 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MGQAPS(0.006)QS(0.005)LLPPAQDQPRS(0.927)PVPS(0.042)AFS(0.017)DQS(0.003)R;MGQAPS(0.001)QS(0.001)LLPPAQDQPRS(0.915)PVPS(0.08)AFS(0.002)DQSR;MGQAPS(0.001)QS(0.003)LLPPAQDQPRS(0.809)PVPS(0.132)AFS(0.039)DQS(0.015)R;MGQAPSQS(0.001)LLPPAQDQPRS(0.977)PVPS(0.015)AFS(0.006)DQS(0.001)R ;;; 76.439 1.25E-05 442045000 3089.93 3040.13 3095.33 2541.96 2975.24 3327.75 3105.33 2805.23 3489.99 3256.03 TRUE FALSE FALSE 2727.733089 3133.792802 3262.672903 2645.632116 2755.762473 3264.278713 3225.103618 3124.566044 3346.131135 3236.662989 0.842760923 0.968217208 1.008036028 0.817394991 0.851420887 1.008532159 0.996428615 0.965366507 1.033821299 1 11.66029144 -5.227676937 24.78014424 0.921125993 0.990741059 0.110555911 0.071725191 875.1620411 642329.0534 0.010778107 0.027476897 5.92E-06 5.227676937 0.069615065 ADVVPQQADPEFPRAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 ADVVPQQADPEFPRASPR 18 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR ;;; 122.44 4.81E-05 434659800 13484.1 13028.7 12136.8 11041.7 14475.3 11411.6 10520.8 12263.5 12721.9 12573 TRUE FALSE FALSE 11903.51424 13430.0988 12792.95212 11492.02825 13407.48596 11193.94274 10926.59078 13659.52727 12197.4979 12498.21524 0.952417126 1.074561331 1.023582318 0.919493546 1.072752045 0.8956433 0.874252089 1.09291823 0.975939177 1 13.60943447 -5.225839922 24.99928905 0.989082979 0.946269324 0.06283337 0.071576301 1324.046402 929793.4198 0.009510428 0.024245772 5.95E-06 5.225839922 -0.042813655 LLSMPGAQGAAAAGSEPPPAT(ph)TSPEGQPK ddPTM_HeLa_CUDC101_4h_R1 1 LLSMPGAQGAAAAGSEPPPATTSPEGQPK 29 0 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;A2ABF9;A0A0G2JK64;Q96KQ7-2;Q96KQ7;Q96KQ7-3 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 0 LLSMPGAQGAAAAGS(0.075)EPPPAT(0.4)T(0.4)S(0.126)PEGQPK 53.197 0.017877 5680800 1237.1 1603.3 1152.7 1131.4 1597.6 1629.2 1991 1393 1260.1 1508.8 TRUE FALSE FALSE 1092.089013 1652.695773 1215.018449 1177.543382 1479.748231 1598.125724 2067.793537 1551.573489 1208.158145 1499.82559 0.728144006 1.101925306 0.810106493 0.78512021 0.986613537 1.065541043 1.378689329 1.034502611 0.805532425 1 10.55057903 -5.224966695 2.421723888 0.878409159 1.20547322 0.488971842 0.132622831 0.193991255 2.207817221 0.020625838 0.061288925 5.96E-06 5.224966695 0.327064061 RTDDIPVWDQEFLK ddPTM_HeLa_CUDC101_4h_R1 1 RTDDIPVWDQEFLK 14 1 E5RJR5;P63208;E5RGM3;E7ERH2;F8W8N3;P63208-2 E5RJR5 SKP1 S-phase kinase-associated protein 1 0 0 201.3 1.00E-16 30824000 6232.3 5801.7 5016.3 5729.7 6569.9 5890.9 5249.9 5256.1 5584.1 6111.8 FALSE FALSE TRUE 5501.759242 5980.4435 5287.496351 5963.381932 6085.251566 5778.540897 5452.390402 5854.433178 5353.921034 6075.446742 0.905572788 0.984362756 0.870305769 0.981554474 1.001613844 0.951130204 0.897446827 0.963621842 0.88123907 1 12.56877478 -9.578507339 1.366782653 0.999947558 0.939833863 0 0.054274875 0.51160356 1.71597702 0.028114536 0.006590775 2.64E-10 9.578507339 -0.060113695 RTDIFGVEETAIGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 RTDIFGVEETAIGKK 15 2 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 1 RTDIFGVEETAIGK(1)K 197.17 3.97E-15 2402000 2021.9 2347.9 2360.3 2151.1 2333 2055.9 2007.2 1883.4 2344 2511.5 FALSE TRUE FALSE 1784.895947 2420.236016 2487.904958 2238.831156 2160.899238 2016.687133 2084.618376 2097.798643 2247.379328 2496.561486 0.714941714 0.969427763 0.996532619 0.896765879 0.865550178 0.807785886 0.834995808 0.840275176 0.900189857 1 11.28572672 -5.458734768 5.085947667 0.883763439 0.82886184 0.133606842 0.079455432 0.636345129 32.56893974 0.016684495 0.037573845 3.48E-06 5.458734768 -0.054901599 RSEAS(ph)KR ddPTM_HeLa_CUDC101_4h_R1 1 RSEASKR 7 2 Q12923-3;Q12923;Q12923-4;Q12923-2 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 1 0 RSEAS(1)KR 79.451 0.038535 9970800 2246.5 1577.5 1667.7 1729.7 1662.2 1721.4 1134.1 1289.9 1874.6 1934.4 TRUE FALSE FALSE 1983.168675 1626.100905 1757.860907 1800.244642 1539.582818 1688.567163 1177.842617 1436.737002 1797.328195 1922.894103 1.031345758 0.845652864 0.914174579 0.936216217 0.800659181 0.878138406 0.612536393 0.747174272 0.93469952 1 10.9090636 -5.223864603 0.440649039 1.018887774 0.589596072 0.616459574 0.073354553 0.865081236 0.194575528 0.018108936 0.169130653 5.97E-06 5.223864603 -0.429291702 DSPSAGGPVGQLEPIPIPAPAS(ph)PGTRPTLK ddPTM_HeLa_CUDC101_4h_R1 1 DSPSAGGPVGQLEPIPIPAPASPGTRPTLK 30 1 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 DS(0.002)PS(0.002)AGGPVGQLEPIPIPAPAS(0.832)PGT(0.072)RPT(0.092)LK 63.291 0.00061878 9080300 472.31 475.14 689.18 608.78 502.42 769.82 594.04 769.98 439.33 780.77 TRUE FALSE FALSE 416.9465378 489.7785002 726.4391555 633.6086798 465.3574776 755.1369661 616.9523218 857.6314108 421.2206314 776.1259453 0.537215049 0.63105544 0.935981022 0.816373533 0.599590157 0.972956736 0.794912637 1.105015772 0.542722008 1 9.600146974 -5.222836397 24.86965112 0.769274607 0.941356862 0.25884961 0.168981463 835.1910467 538063.7913 0.02809791 0.071634325 5.99E-06 5.222836397 0.172082254 SQSAAVTPSST(ph)TSSTR ddPTM_HeLa_CUDC101_4h_R1 1 SQSAAVTPSSTTSSTR 16 0 Q16186;A0A087WX59 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 1 0 SQSAAVT(0.012)PS(0.022)S(0.073)T(0.838)T(0.04)S(0.012)S(0.002)T(0.002)R 118.23 0.00034905 0 863.76 782.64 792.15 658.56 738.64 935.52 896.09 761.47 736.7 846.81 TRUE FALSE FALSE 762.5113622 806.7522107 834.9760251 685.4189233 684.1519988 917.6765147 930.6524915 848.1526668 706.3329142 841.7731365 0.905839506 0.958396242 0.991925246 0.814256114 0.812751048 1.090170825 1.105585877 1.007578681 0.839101278 1 9.717287659 -5.222764783 24.99498403 0.938493727 1.071559254 0.467452774 0.074042658 428.3012172 276805.9918 0.01053024 0.02684639 5.99E-06 5.222764783 0.133065527 ALVVPEPEPDS(ph)DSNQERK ddPTM_HeLa_CUDC101_4h_R1 1 ALVVPEPEPDSDSNQERK 18 1 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 ALVVPEPEPDS(0.926)DS(0.074)NQERK 116.65 9.37E-05 29800000 4646.8 3917.3 4010.2 3897 4497.4 5059.6 5340.6 4560.6 3756.1 3768.7 TRUE FALSE FALSE 4102.109148 4037.98737 4227.003542 4055.936504 4165.635762 4963.09656 5546.588731 5079.760269 3601.271968 3746.283605 1.094980941 1.077864838 1.128319153 1.082656022 1.111938177 1.324805349 1.480557618 1.355946534 0.961291869 1 11.8712444 -5.222642237 2.342349939 1.058151972 1.420977854 0.886886531 0.053562466 0.066967035 0.710739254 0.007712605 0.023271927 5.99E-06 5.222642237 0.362825882 ERPDLEAPAPGS(ph)PFR ddPTM_HeLa_CUDC101_4h_R1 4 ERPDLEAPAPGSPFR 15 1 H0YBA8;Q9NQT8;Q9NQT8-2 H0YBA8 KIF13B Kinesin-like protein KIF13B 1 0 ERPDLEAPAPGS(1)PFR;ERPDLEAPAPGS(1)PFR;ERPDLEAPAPGS(1)PFR;ERPDLEAPAPGS(1)PFR ;;; 100.59 0.0031413 69469400 6100.5 5363.21 5572.4 5333.44 5805.71 5382.67 4553.27 4567.35 5522 5897.3 TRUE FALSE FALSE 5385.408638 5528.444143 5873.6608 5550.960736 5377.43434 5280.004538 4728.891149 5087.278662 5294.380823 5862.222597 0.91866328 0.943062815 1.001951172 0.94690378 0.917302994 0.900683052 0.806672055 0.867807146 0.903135412 1 12.51723204 -5.220163508 1.501037093 0.96161456 0.836520982 0.605694732 0.034736807 0.203781113 0.847008802 0.005536197 0.02177293 6.02E-06 5.220163508 -0.125093578 RTIPWLEDR ddPTM_HeLa_CUDC101_4h_R1 2 RTIPWLEDR 9 1 O43707;O43707-2;K7EJH8 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 108.43 0.011504 25922000 3651.8 3196.1 2599.8 3070.3 2845.6 3115.9 2871.3 2930.1 3218 1922.66 FALSE FALSE TRUE 3223.74154 3294.568053 2740.353052 3195.520105 2635.685757 3056.469399 2982.047003 3263.65074 3085.352678 1911.223933 1.686741927 1.723800124 1.433821022 1.671975769 1.379056484 1.599220974 1.560281321 1.707623416 1.614333425 1 10.90028111 -9.277212233 0.904072813 0.983603464 1.593205162 0 0.216374072 0.205751616 0.28901569 0.085540551 0.020883887 5.28E-10 9.277212233 0.609601698 TTIACSLGELPNLKEEDILNKS(ph)LDAK ddPTM_HeLa_CUDC101_4h_R1 1 TTIACSLGELPNLKEEDILNKSLDAK 26 2 Q7Z4H7-3;Q7Z4H7 Q7Z4H7-3 HAUS6 HAUS augmin-like complex subunit 6 1 0 T(0.005)T(0.005)IACS(0.037)LGELPNLKEEDILNKS(0.954)LDAK 40.986 0.03142 18163000 2603.8 1898.1 2352.3 1858.5 1908.8 1785.4 1601.8 1235.9 2071.9 2344.8 TRUE FALSE FALSE 2298.586511 1956.578211 2479.472453 1934.297663 1767.991627 1751.34647 1663.581963 1376.58986 1986.495405 2330.853025 0.986156779 0.83942582 1.063761819 0.829866852 0.758516993 0.751375763 0.713722377 0.590594879 0.852261118 1 11.18664232 -5.219995651 0.511776018 0.999538142 0.534029487 0.675519909 0.078499006 0.53883293 0.169592496 0.013638477 0.126587709 6.03E-06 5.219995651 -0.465508655 QRSVS(ph)QERLEDS(ph)VLMK ddPTM_HeLa_CUDC101_4h_R1 2 QRSVSQERLEDSVLMK 16 2 Q5T5U3;A0A087WW76;A0A452Q6Z5;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 2 0 QRSVS(1)QERLEDS(1)VLMK;QRS(0.003)VS(0.997)QERLEDS(1)VLMK ; 83.045 0.0011463 0 1958.22 1625 1625.14 1261.36 1672.65 1791.12 1805.27 1504.84 1949.82 1692.55 TRUE FALSE FALSE 1728.68042 1675.064324 1712.999984 1312.803713 1549.261942 1756.95737 1874.899869 1676.144903 1869.447594 1682.482637 1.027458104 0.995590853 1.018138283 0.780277718 0.920818978 1.044264785 1.114365062 0.996233106 1.11112445 1 10.7163759 -5.219231065 0.002253542 1.846044543 0.142761038 0.016064666 0.090393886 863328.3997 433.7995475 162100.0199 165788.3186 6.04E-06 5.219231065 -1.703283505 RTLEGELHDLR ddPTM_HeLa_CUDC101_4h_R1 2 RTLEGELHDLR 11 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 126.1 0.0019968 51221000 11595.1 9599.3 9703.3 9437 11472.7 10078.2 10065.2 10648.7 10070.8 9879.5 FALSE FALSE TRUE 10235.93996 9895.043055 10227.88975 9821.88165 10626.38178 9885.975126 10453.41814 11860.90496 9655.677361 9820.736295 1.042278262 1.007566313 1.041458547 1.000116626 1.082035141 1.006642967 1.064423056 1.207740907 0.983192815 1 13.26161548 -4.270721807 2.609262315 1.023272769 1.243840293 0.809088496 0.02727409 0.134670319 1.191483036 0.003447684 0.064123745 5.36E-05 4.270721807 0.220567524 RTLK(ac)MIQPSASGSLVGR ddPTM_HeLa_CUDC101_4h_R1 1 RTLKMIQPSASGSLVGR 17 2 H7C608;E2QRF9;O75496;C9K0U5 H7C608 GMNN Geminin 0 1 RTLK(1)MIQPSASGSLVGR 87.668 0.034073 3100000 501.86 377.1 320.83 267.1 476.03 693.64 500.53 376.49 235.12 391.99 FALSE TRUE FALSE 443.0327316 388.718004 338.1750403 277.9934925 440.9142153 680.4099727 519.8356098 419.3480998 225.4282541 389.658426 1.136977162 0.997586548 0.8678756 0.71342867 1.131540308 1.746170305 1.334080248 1.076194102 0.578527857 1 8.606066204 -5.508307336 24.59391516 1.018253847 1.390093775 0.420898233 0.234990965 393.7388615 664559.4113 0.028149162 0.060831961 3.10E-06 5.508307336 0.371839927 RTLPSTSSSGSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 RTLPSTSSSGSKR 13 2 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 0 1 RTLPSTSSSGSK(1)R 107.69 0.010168 1034700 147.52 229.24 171.23 349.34 164.14 270.33 208.15 395.86 146.8 181.96 FALSE TRUE FALSE 130.2279292 236.3026127 180.4872117 363.5875952 152.0317192 265.1739057 216.1784152 440.9231023 140.7488419 180.8776938 0.719977828 1.306422078 0.997841182 2.010129538 0.840522211 1.466039842 1.195163487 2.437686444 0.778143722 1 7.498870693 -1 0.364500424 0.899912735 16.70162594 0.477639058 0.384636462 34.92548029 0.431590566 0.102648835 389.3802244 0.1 1 15.80171321 LVFDNQLTIKS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 LVFDNQLTIKSPSK 14 1 J3QR52;J3QLN7;Q99741 J3QR52 CDC6 Cell division control protein 6 homolog 1 0 LVFDNQLT(0.001)IKS(0.833)PS(0.166)K 69.314 0.026837 14914000 1555.6 1124.1 1431.7 1674.6 1308.1 1055.9 941.23 675.93 1041.4 1447.1 TRUE FALSE FALSE 1373.254926 1158.732189 1509.102033 1742.897426 1211.604069 1035.760467 977.5335564 752.875139 998.4730512 1438.492585 0.954648596 0.805518361 1.049085722 1.211613772 0.84227342 0.720031843 0.679554116 0.523377838 0.69411067 1 10.49034207 -5.217927682 2.095429457 0.984188768 0.608693414 0.495022284 0.139030194 0.140954549 1.186219769 0.015463842 0.049289079 6.05E-06 5.217927682 -0.375495354 S(ph)SPAGNSPAPL ddPTM_HeLa_CUDC101_4h_R1 1 SSPAGNSPAPL 11 0 A0A087WZG9;B4DSP0;Q86TG7-2 A0A087WZG9 PEG10 Retrotransposon-derived protein PEG10 1 0 S(0.493)S(0.493)PAGNS(0.014)PAPL 100.04 0.013778 8821600 2672.3 2677.9 2293.4 2588 2869.5 2406 2182.3 2397.3 2541.7 2587.2 TRUE FALSE FALSE 2359.057045 2760.402925 2417.388141 2693.549826 2657.822702 2360.109559 2266.472042 2670.198942 2436.93005 2571.811219 0.917274576 1.073330307 0.939955516 1.047335748 1.033443933 0.917683826 0.881274654 1.038256199 0.947554016 1 11.32856903 -5.214206928 24.98825237 0.97795699 0.939291877 0.073842608 0.060952306 923.1621794 488396.0911 0.008853916 0.022573064 6.11E-06 5.214206928 -0.038665113 GY(ph)VFQMEMIVR ddPTM_HeLa_CUDC101_4h_R1 2 GYVFQMEMIVR 11 0 Q5QPJ9;Q5QPK2;O60762;H0Y368 Q5QPJ9 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 1 0 GY(1)VFQMEMIVR;GY(1)VFQMEMIVR ; 43.419 0.036246 3478000 891.7 564.26 590.88 799.56 825.14 863.78 864.55 833.01 801.79 690.68 TRUE FALSE FALSE 787.1762777 581.6441818 622.8247601 832.1695128 764.2710661 847.3048357 897.8959831 927.8364913 768.7398768 686.5718046 1.146531612 0.847171669 0.907151671 1.212064794 1.113169899 1.234109572 1.30779618 1.351404886 1.119678775 1 9.423266801 -5.213971584 1.113824738 1.044805041 1.35347486 0.599622335 0.099051822 0.366876193 0.77270861 0.0170961 0.088265062 6.11E-06 5.213971584 0.30866982 TSKEPPSS(ph)PLQPQK ddPTM_HeLa_CUDC101_4h_R1 4 TSKEPPSSPLQPQK 14 1 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 1 0 TSKEPPS(0.027)S(0.973)PLQPQK;TS(0.001)KEPPS(0.195)S(0.804)PLQPQK;TSKEPPS(0.19)S(0.81)PLQPQK;T(0.012)S(0.035)KEPPS(0.097)S(0.856)PLQPQK ;;; 108.18 0.0022549 154162200 22735.1 20834.3 21788.3 22745.8 23569 20929.8 19569.3 18324.1 21563.6 22483.8 TRUE FALSE FALSE 20070.12604 21476.18009 22966.2414 23673.47204 21830.36183 20530.59894 20324.09446 20410.04148 20674.73928 22350.06536 0.897989591 0.960900102 1.027569317 1.059212654 0.976747114 0.918592344 0.909352797 0.91319829 0.925041558 1 14.44799143 -5.213960899 6.343490214 0.967007346 0.912718896 0.282706374 0.04466678 0.328639834 33.24207595 0.007992695 0.020473715 6.11E-06 5.213960899 -0.05428845 SQSGT(ph)LDGESAAWSASGEDSR ddPTM_HeLa_CUDC101_4h_R1 1 SQSGTLDGESAAWSASGEDSR 21 0 P49815;X5D2U8;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4;H3BQK4 P49815 TSC2 Tuberin 1 0 SQS(0.002)GT(0.513)LDGES(0.485)AAWSASGEDSR 215.88 6.25E-26 36002000 1413.1 952.74 1066.1 1240.5 1224.3 1470.4 1493.4 1261.4 1472.6 1147.8 TRUE FALSE FALSE 1247.45856 982.0927901 1123.736591 1291.092952 1133.985828 1442.35457 1551.000938 1404.992677 1411.898805 1140.972835 1.093328888 0.860750371 0.984893379 1.131572035 0.993876273 1.264144532 1.359367104 1.231398886 1.237451727 1 10.15604873 -5.208768236 5.344612054 1.03015692 1.296949531 0.551286003 0.099516379 0.087530841 5.660409435 0.011012476 0.028475572 6.18E-06 5.208768236 0.266792611 SVS(ph)QDLIK ddPTM_HeLa_CUDC101_4h_R1 1 SVSQDLIK 8 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(0.029)VS(0.971)QDLIK 95.483 0.022979 9546300 2271 1987.9 1803.3 1744.2 2413.5 2612.7 2602 2452 2135.2 2400.4 TRUE FALSE FALSE 2004.796823 2049.144843 1900.791853 1815.336015 2235.460913 2562.867101 2702.360012 2731.125769 2047.186152 2386.122314 0.8401903 0.858776112 0.796602857 0.76078917 0.936859314 1.074071973 1.132532057 1.144587498 0.857955244 1 11.22045228 -5.208361237 2.900431 0.895033698 1.132512532 0.743389593 0.067295158 0.150246238 2.489124199 0.012991978 0.03681941 6.19E-06 5.208361237 0.237478833 VVNTDHGS(ph)PEQLQIPVTDSGR ddPTM_HeLa_CUDC101_4h_R1 4 VVNTDHGSPEQLQIPVTDSGR 21 0 Q6IQ49-3;Q6IQ49-2;Q6IQ49 Q6IQ49-3 SDE2 Protein SDE2 homolog 1 0 VVNTDHGS(1)PEQLQIPVTDSGR;VVNT(0.061)DHGS(0.939)PEQLQIPVTDSGR;VVNTDHGS(1)PEQLQIPVTDSGR;VVNTDHGS(1)PEQLQIPVTDSGR ;;; 243.09 2.35E-47 317438000 9733.5 8954.4 8823.4 8610.7 10208.4 8226.3 7679.7 7552.9 9933.5 8691.9 TRUE FALSE FALSE 8592.553885 9230.27445 9300.419693 8961.881565 9455.34667 8069.397033 7975.908602 8412.691606 9524.036926 8640.200192 0.994485509 1.068294049 1.076412524 1.037230778 1.094343471 0.93393635 0.923116181 0.973668598 1.102293548 1 13.07684902 -5.208208143 24.99933959 1.01752925 0.941527882 0.428199257 0.046675271 265.852952 124853.7124 0.006246005 0.015924245 6.19E-06 5.208208143 -0.076001368 NYSEVIEVDES(ph)DVEEDIFPTTSK ddPTM_HeLa_CUDC101_4h_R1 1 NYSEVIEVDESDVEEDIFPTTSK 23 0 F8W7U8;P49959;P49959-3;P49959-2 F8W7U8 MRE11A Double-strand break repair protein MRE11A 1 0 NYSEVIEVDES(0.999)DVEEDIFPTTSK 94.207 9.68E-05 6884800 3018.3 2809.6 3056.7 2407.2 3212.9 3259.4 2883.8 2886.8 3090.4 2693.3 TRUE FALSE FALSE 2664.499449 2896.160446 3221.954448 2505.376021 2975.890768 3197.232376 2995.029132 3215.421643 2963.012404 2677.280132 0.995226244 1.08175473 1.203443155 0.935791511 1.111535073 1.194209129 1.118683509 1.201003065 1.106724832 1 11.38655239 -5.208003991 0.316944675 0.985153249 1.264847718 0.186259769 0.079828905 2.786226619 0.319985181 0.034006271 0.281621571 6.19E-06 5.208003991 0.279694469 ELILGSETPS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 ELILGSETPSSPR 13 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 0 ELILGSET(0.001)PS(0.499)S(0.499)PR 174.46 2.93E-07 42957000 5597.2 4623.6 4366.9 4393.3 5507.5 4816.7 4118.3 4188 5179.1 5148.5 TRUE FALSE FALSE 4941.104701 4766.047636 4602.987823 4572.477763 5101.222697 4724.829473 4277.144211 4664.744992 4965.615306 5117.876493 0.965459934 0.931254914 0.899394081 0.893432612 0.996745956 0.923201152 0.835726344 0.911461032 0.970249148 1 12.32132962 -5.207994413 0.118895441 1.058321525 0.760813039 0.37486885 0.038501472 15.84719349 0.453548125 0.303780588 0.918503179 6.19E-06 5.207994413 -0.297508486 SDS(ph)DTEGLLFSR ddPTM_HeLa_CUDC101_4h_R1 2 SDSDTEGLLFSR 12 0 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 S(0.014)DS(0.977)DT(0.01)EGLLFSR;S(0.002)DS(0.528)DT(0.47)EGLLFSR ; 188.13 6.97E-11 12140100 3783.8 2762.8 2105.23 2708.9 2433.6 2515 1995.79 1504.08 2708.4 2847.8 TRUE FALSE FALSE 3340.2687 2847.918593 2219.045102 2819.380651 2254.078176 2467.030565 2072.768289 1675.298387 2596.758606 2830.861159 1.179947907 1.006025528 0.783876346 0.995944517 0.796251759 0.871477062 0.73220415 0.591798147 0.917303414 1 11.46702528 -5.207342884 0.501344389 1.082126488 0.543471464 0.55928173 0.106167954 0.910812009 0.271438315 0.025818329 0.244615874 6.20E-06 5.207342884 -0.538655024 IAQLSES(ph)PVILTPNAK ddPTM_HeLa_CUDC101_4h_R1 1 IAQLSESPVILTPNAK 16 0 Q6P4F7-3;Q6P4F7;H3BQ41;H3BR51;Q6P4F7-2 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 IAQLS(0.174)ES(0.571)PVILT(0.254)PNAK 149.31 0.00019297 19886000 1523.9 1247.4 1346.1 1143.5 1116.7 1440.6 738.19 396.14 1307.6 1864.9 TRUE FALSE FALSE 1345.270752 1285.830915 1418.874238 1190.136873 1034.323266 1413.122955 766.6622356 441.2349763 1253.700175 1853.807492 0.725679855 0.693616204 0.765383808 0.641995934 0.557945348 0.762281392 0.413560868 0.238015532 0.676283908 1 10.85627572 -5.206956776 0.164141265 1.090234504 1.81E-15 0.517351284 0.137347512 5.200308617 0.219469378 0.311174552 1.317563458 6.21E-06 5.206956776 -1.090234504 S(ph)SPYGTLKPEEMSGPGLAEPK ddPTM_HeLa_CUDC101_4h_R1 3 SSPYGTLKPEEMSGPGLAEPK 21 1 Q5JSZ5;A0A494C0D3;Q5JSZ5-5;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 S(0.353)S(0.353)PY(0.287)GT(0.007)LKPEEMS(0.001)GPGLAEPK;S(0.459)S(0.459)PY(0.079)GT(0.004)LKPEEMSGPGLAEPK;S(0.324)S(0.324)PY(0.273)GT(0.079)LKPEEMSGPGLAEPK ;; 106.11 2.15E-05 82437000 5386.4 5192.7 5277.3 5565.9 5284.2 5186.8 4459.6 4340.4 5428.7 5666.1 TRUE FALSE FALSE 4755.014357 5352.680932 5562.606801 5792.90146 4894.395094 5087.870432 4631.608266 4834.493591 5204.926688 5632.397785 0.844225592 0.950337873 0.98760901 1.028496509 0.868971845 0.903322284 0.822315547 0.858336676 0.924104953 1 12.45953351 -5.205253993 1.957705552 0.937321009 0.84514246 0.370271719 0.05360635 0.409554191 2.990018408 0.010411851 0.03480337 6.23E-06 5.205253993 -0.092178549 AQSS(ph)PAAPASLSAPEPASQAR ddPTM_HeLa_CUDC101_4h_R1 4 AQSSPAAPASLSAPEPASQAR 21 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;Q8WUI4-10;H0YI15 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 AQS(0.011)S(0.989)PAAPASLSAPEPASQAR;AQS(0.028)S(0.969)PAAPAS(0.002)LS(0.001)APEPASQAR;AQS(0.017)S(0.981)PAAPAS(0.001)LSAPEPASQAR;AQS(0.386)S(0.61)PAAPAS(0.002)LS(0.002)APEPASQAR ;;; 131.48 4.10E-07 42591100 4953.77 4237.33 3598.07 3791.91 5073.91 3629.08 3628.76 2925.09 4481.65 4077.61 TRUE FALSE FALSE 4373.09659 4367.877115 3792.592548 3946.56048 4699.617768 3559.861345 3768.722489 3258.070422 4296.91449 4053.356194 1.078882876 1.077595184 0.935667226 0.973652522 1.159438634 0.878250313 0.929778265 0.803795735 1.060088056 1 11.98490124 -5.205012455 16.51768684 1.035496876 0.876511911 0.585676991 0.065421385 4.557560501 1333.439413 0.00919156 0.023434531 6.24E-06 5.205012455 -0.158984965 SVS(ph)ENSLVAMDFSGQTGR ddPTM_HeLa_CUDC101_4h_R1 3 SVSENSLVAMDFSGQTGR 18 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 0 S(0.024)VS(0.906)ENS(0.07)LVAMDFSGQTGR;SVS(0.825)ENS(0.175)LVAMDFSGQTGR;S(0.001)VS(0.938)ENS(0.061)LVAMDFSGQTGR ;; 181.32 5.22E-11 67664000 6060.7 5541.3 5054.5 4360.5 5914.5 5716.2 5991.8 4687.9 5516.2 5533.4 TRUE FALSE FALSE 5350.273933 5712.020885 5327.761559 4538.340038 5478.199118 5607.173009 6222.905733 5221.551587 5288.819901 5500.487091 0.972690935 1.038457284 0.968598139 0.825079663 0.995948 1.019395722 1.131337213 0.949288945 0.961518464 1 12.42534367 -5.203464458 3.893621986 0.977280753 1.046066086 0.161209407 0.067055814 0.314889131 9.72344008 0.009285485 0.024819855 6.26E-06 5.203464458 0.068785333 LAS(ph)TSDIEEK ddPTM_HeLa_CUDC101_4h_R1 3 LASTSDIEEK 10 0 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIS4;H0YHI8;A0A3B3ISH4;F8VZN8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 LAS(0.972)T(0.028)SDIEEK;LAS(0.624)T(0.363)S(0.013)DIEEK;LAS(0.489)T(0.489)S(0.022)DIEEK ;; 172.17 2.86E-07 33059700 4703.4 4201.9 3968.64 4590.2 4867.4 6214.5 6481.1 5637.6 3782.9 4829.1 TRUE FALSE FALSE 4152.074582 4331.355559 4183.196683 4777.408197 4508.341599 6095.968767 6731.078198 6279.361596 3626.967261 4800.376298 0.86494773 0.902295005 0.871430993 0.995215354 0.939164207 1.269893939 1.402198032 1.308097784 0.755558947 1 12.22893179 -5.201529841 3.306584974 0.930639573 1.353438736 0.874908602 0.073152055 0.052530587 1.140458355 0.008719943 0.024034824 6.29E-06 5.201529841 0.422799163 SHS(ph)APSEVGFSDAR ddPTM_HeLa_CUDC101_4h_R1 2 SHSAPSEVGFSDAR 14 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 S(0.004)HS(0.996)APSEVGFSDAR;S(0.233)HS(0.383)APS(0.383)EVGFSDAR ; 175.01 2.72E-07 20997000 1803.99 1588.95 1654.62 1558.62 2127 1430.99 1466.26 1382.25 1820.35 1769.93 TRUE FALSE FALSE 1592.529027 1637.903666 1744.073762 1622.187261 1970.095448 1403.69625 1522.814139 1539.599753 1745.314403 1759.402378 0.90515339 0.930943192 0.991287601 0.922010383 1.119752635 0.797825596 0.865529204 0.875069724 0.99199275 1 10.78086975 -5.200543849 24.9999994 0.962096461 0.848080254 0.486318871 0.061169053 181.9498668 74697.06885 0.008719323 0.022229998 6.30E-06 5.200543849 -0.114016207 AADPVPSFDESS(ph)QDTSEK ddPTM_HeLa_CUDC101_4h_R1 1 AADPVPSFDESSQDTSEK 18 0 A0A075B754;Q96QE3-2;Q96QE3 A0A075B754 ATAD5 ATPase family AAA domain-containing protein 5 1 0 AADPVPS(0.001)FDES(0.385)S(0.612)QDT(0.001)S(0.001)EK 130.27 3.05E-05 0 988.2 887.21 994.65 1012.2 921.37 1279.6 1210 1192.1 841.86 1061.7 TRUE FALSE FALSE 872.364694 914.5438885 1048.423788 1053.481891 853.4023707 1255.193762 1256.670105 1327.803845 807.1581745 1055.384961 0.826584352 0.866550048 0.993404138 0.9981968 0.808617142 1.189323146 1.190722013 1.258122765 0.764799769 1 10.04355362 -5.19853134 7.298936575 0.91810841 1.212836545 0.753956022 0.082651715 0.109527337 11.12942471 0.011558953 0.029641042 6.33E-06 5.19853134 0.294728135 HGGS(ph)PQPLATTPLSQEPVNPPSEAS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HGGS(0.999)PQPLAT(0.001)TPLSQEPVNPPS(0.14)EAS(0.722)PT(0.138)R 119.5 7.95E-13 57532000 1307.6 1289 907.28 1243.8 1297.1 1130.5 1014.5 439.98 1237.1 1344.5 TRUE FALSE FALSE 1154.32511 1328.712562 956.3303012 1294.52754 1201.415517 1108.937596 1053.629605 490.0655447 1186.106214 1336.502854 0.863690718 0.994171137 0.715546771 0.968593173 0.898924767 0.82973081 0.788348189 0.366677515 0.88747002 1 10.3842472 -4.102916841 1.424459228 0.920656205 1.56E-18 0.790441281 0.081083672 0.58804748 0.798992914 0.012283449 0.853702156 7.89E-05 4.102916841 -0.920656205 down RVAIFIEK ddPTM_HeLa_CUDC101_4h_R1 2 RVAIFIEK 8 1 Q9P258 Q9P258 RCC2 Protein RCC2 0 0 ; ; 102.62 0.0054607 3631200 5205.5 4013.7 3718.8 4510.1 4019.9 4458.4 3606.8 4071.8 3578.2 1925.16 FALSE FALSE TRUE 4595.319181 4137.35734 3919.849577 4694.041372 3723.359986 4373.363448 3745.915484 4535.317253 3430.705081 1913.709063 2.401263217 2.161957332 2.048299636 2.452850051 1.945624891 2.285281255 1.957411164 2.369909482 1.792699396 1 10.9021558 -9.30335318 0.871887703 0.9470728 2.204302204 0.476967027 0.293177999 0.166908587 0.212107649 0.142298826 0.03231934 4.97E-10 9.30335318 1.257229404 SAQGSS(ph)SPVPSMVQK ddPTM_HeLa_CUDC101_4h_R1 1 SAQGSSSPVPSMVQK 15 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 SAQGS(0.004)S(0.498)S(0.498)PVPS(0.001)MVQK 180.74 4.79E-09 35000000 5033 4684.8 3974.2 4016.3 4027.2 3374.6 3303.8 2395.8 4178 4033.9 TRUE FALSE FALSE 4443.03937 4829.133135 4189.057273 4180.102074 3730.121479 3310.235127 3431.228673 2668.528188 4005.781072 4009.906183 1.10801579 1.204300778 1.044677128 1.042443858 0.930226621 0.825514358 0.855688018 0.665483945 0.99897127 1 11.96935277 -5.197874206 1.054480639 1.0664004 0.718487518 0.793032064 0.066660921 0.240476097 0.441469917 0.011544525 0.064228845 6.34E-06 5.197874206 -0.347912881 RVDIIPGFEFDR ddPTM_HeLa_CUDC101_4h_R1 1 RVDIIPGFEFDR 12 1 Q9H4A4;A6NKB8 Q9H4A4 RNPEP Aminopeptidase B 0 0 149.57 0.00069649 9783600 2428.7 2242.4 2074.8 1725.4 2289.2 2566.5 2144.5 1915.9 1946.1 2292 FALSE FALSE TRUE 2144.011468 2311.485686 2186.969964 1795.76927 2120.330277 2517.548289 2227.214083 2133.998312 1865.880934 2278.367082 0.941029865 1.014536114 0.959884814 0.788182591 0.930635934 1.104979223 0.977548395 0.936634982 0.81895536 1 11.15378449 -9.461255452 1.041173967 1.001574264 0.956193968 0 0.093628998 1.819027003 3.320703496 0.064289958 0.013780598 3.46E-10 9.461255452 -0.045380296 RVEEELEK ddPTM_HeLa_CUDC101_4h_R1 1 RVEEELEK 8 1 Q9NWB6;Q9NWB6-2;Q9NWB6-3 Q9NWB6 ARGLU1 Arginine and glutamate-rich protein 1 0 0 89.886 0.030826 6530100 3755.7 2955.6 3243.9 3722.7 3522.9 3235.1 2977.6 2246 3679.4 3669.5 FALSE FALSE TRUE 3315.462539 3046.658533 3419.275046 3874.527797 3263.022686 3173.395858 3092.447029 2501.675561 3527.733575 3647.673651 0.90892521 0.835233309 0.937385132 1.062191459 0.894548964 0.869978008 0.847786103 0.685827681 0.967118748 1 11.83276095 -3.448051499 0.761883914 0.950877048 1.98E-20 0.642577142 0.058577577 3.901086142 0.663161694 0.010546312 4.246075572 0.000356409 3.448051499 -0.950877048 S(ph)WASPVYTEADGTFSR ddPTM_HeLa_CUDC101_4h_R1 5 SWASPVYTEADGTFSR 16 0 E9PMS6;Q8WWI1-3;E9PMP7;E9PJ10;E9PK58;E9PLU6 E9PMS6 LMO7 LIM domain only protein 7 1 0 S(0.992)WAS(0.008)PVYTEADGTFSR;S(1)WASPVYTEADGTFSR;S(0.977)WAS(0.023)PVYTEADGTFSR;S(0.556)WAS(0.412)PVY(0.001)T(0.027)EADGT(0.003)FS(0.001)R;S(1)WASPVYTEADGTFSR ;;;; 232.26 3.86E-43 633409800 5453.11 4930.76 4365.26 4818.87 5324.38 5476.68 5244.38 4563.5 4738.39 4609.72 TRUE FALSE FALSE 4813.904712 5082.670871 4601.25916 5015.404348 4931.611095 5372.221454 5446.657493 5082.990394 4543.071559 4582.30118 1.050543062 1.10919616 1.004137218 1.094516521 1.076230239 1.172385062 1.188629311 1.109265889 0.991438882 1 12.16185657 -5.197595643 0.252288134 0.99697287 1.24588045 0.640209863 0.039394301 2.82335727 0.218366319 0.031604592 0.216178711 6.34E-06 5.197595643 0.24890758 RVELLK ddPTM_HeLa_CUDC101_4h_R1 1 RVELLK 6 1 A0A3B3IT92;P33991;A0A3B3ITP6;A0A3B3IS57;A0A3B3IU45;E5RG31;A0A3B3IRR8 A0A3B3IT92 MCM4 DNA replication licensing factor MCM4 0 0 94.407 0.0022795 0 2877.7 2712.2 2673.3 2849.9 3096.6 2946.7 2799.5 2669.5 2960.7 2520 FALSE FALSE TRUE 2540.380368 2795.759667 2817.826684 2966.13124 2868.169987 2890.496607 2907.477653 2973.38509 2838.658693 2505.010928 1.014119475 1.116066855 1.124876005 1.184079162 1.144973044 1.153885827 1.160664658 1.186974898 1.133192139 1 11.29060118 -7.099675566 1.631767481 1.004103514 1.16250903 0.489631854 0.043925928 0.048213542 0.247518873 0.002828135 0.003576465 7.95E-08 7.099675566 0.158405516 AET(ph)PY(ph)MVMNPET(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 AETPYMVMNPETK 13 0 O75339 O75339 CILP Cartilage intermediate layer protein 1;Cartilage intermediate layer protein 1 C1;Cartilage intermediate layer protein 1 C2 3 0 AET(1)PY(1)MVMNPET(1)K 49.559 0.038331 26611000 3223.5 3178.1 3364.9 3151.3 3606.1 3027.8 2875.4 2758.7 3506.1 3313.8 TRUE FALSE FALSE 2845.646217 3276.013494 3546.816672 3279.823635 3340.085187 2970.04976 2986.305141 3072.739257 3361.577074 3294.08937 0.863864303 0.994512633 1.076721447 0.995669293 1.013963136 0.901629988 0.9065647 0.932803853 1.020487515 1 11.68566398 -5.19601134 24.99212175 0.958828331 0.912955977 0.120041266 0.058862097 444.9049822 169942.8146 0.010394783 0.026501597 6.37E-06 5.19601134 -0.045872354 GYYSPYSVSGSGSTAGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 GYYSPYSVSGSGS(0.107)T(0.059)AGS(0.834)R 251.04 2.00E-56 258110000 2269.3 2066.9 1907.4 2018.9 2168.9 2405.6 2579 2041.8 1737.2 1923.4 TRUE FALSE FALSE 2003.296094 2130.578739 2010.519814 2101.239468 2008.904568 2359.717188 2678.472894 2274.230259 1665.591881 1911.959531 1.04777118 1.11434301 1.051549356 1.098997878 1.050704544 1.234187832 1.400904596 1.189476148 0.871143899 1 10.90083627 -5.195560879 3.319927147 1.038979563 1.29992935 0.665994589 0.078881708 0.081373274 1.766385941 0.008330877 0.023034708 6.37E-06 5.195560879 0.260949788 RVIISAPSADAPMFVMGVNHEK ddPTM_HeLa_CUDC101_4h_R1 2 RVIISAPSADAPMFVMGVNHEK 22 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 117.27 5.74E-05 4741600 1524.78 1461.58 1373.13 1309.59 1449.04 1363.32 1443.6 1496.26 1301.22 1247.12 FALSE FALSE TRUE 1346.0476 1506.609547 1447.365561 1363.000741 1342.147206 1337.316942 1499.280136 1666.58819 1247.583161 1239.702075 1.085783131 1.21529969 1.1675108 1.099458304 1.082636896 1.078740586 1.209387454 1.34434573 1.006357242 1 10.27577774 -1 0.095257732 0.905010979 1.849815494 0.536724931 0.068357997 84.5373413 0.578775588 0.715941007 10.48071516 0.1 1 0.944804515 RVLGLVLLR ddPTM_HeLa_CUDC101_4h_R1 1 RVLGLVLLR 9 1 J3QLE5;P14678-2;P63162;P14678;P63162-2;P14678-3 J3QLE5 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N 0 0 101.54 0.0045179 0 0 0 0 0 0 72.831 0 0 0 116.82 FALSE FALSE TRUE 0 0 0 0 0 71.44187002 0 0 0 116.1251494 0 0 0 0 0 0.615214451 0 0 0 1 6.859536643 -9.201574579 0.824587521 1.03256946 0.078008354 0 0.355900091 0.249994191 0.290357728 0.152578027 0.03770984 6.29E-10 9.201574579 -0.954561105 SEPVKEESS(ph)ELEQPFAQDTSSVGPDRK ddPTM_HeLa_CUDC101_4h_R1 3 SEPVKEESSELEQPFAQDTSSVGPDRK 27 2 Q15424-2;Q15424;Q15424-4;Q15424-3;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 SEPVKEES(0.186)S(0.814)ELEQPFAQDTSSVGPDRK;S(0.001)EPVKEES(0.204)S(0.795)ELEQPFAQDTSSVGPDRK;SEPVKEES(0.051)S(0.929)ELEQPFAQDT(0.013)S(0.003)S(0.003)VGPDRK ;; 99.774 1.20E-06 75390000 3086.05 2856.44 3024.86 3157.48 3578.73 4135.66 4039.73 4019.01 3237.16 3225.38 TRUE FALSE FALSE 2724.307897 2944.443531 3188.393081 3286.255682 3314.734218 4056.779176 4195.543739 4476.517853 3103.722895 3206.195296 0.849701171 0.91836063 0.994447558 1.024970527 1.033852873 1.265293846 1.30857398 1.396208727 0.968039251 1 11.64664659 -5.193338764 0.969491002 0.929265796 1.416862898 0.92918157 0.04586032 0.169736337 0.253312272 0.010075293 0.061309615 6.41E-06 5.193338764 0.487597102 SSSSSAS(ph)PSS(ph)PSSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSSSASPSSPSSR 14 0 E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 SSSS(0.001)S(0.001)AS(0.996)PS(0.06)S(0.911)PS(0.029)S(0.003)R 123.68 0.01194 7496300 8781.7 3495.8 5415.6 6719.6 4958.8 4419 3769.6 1140.4 7119.2 8206.2 TRUE FALSE FALSE 7752.322438 3603.501454 5708.383717 6993.654333 4592.999203 4334.714938 3914.994735 1270.218526 6825.743563 8157.389157 0.950343583 0.44174691 0.699780727 0.857339793 0.5630477 0.531385086 0.479932324 0.155713857 0.836755907 1 12.99389176 -5.192910917 0.286694384 1.041133083 6.41E-18 0.612220071 0.156458585 2.016642518 0.192337509 0.091102177 0.706699652 6.41E-06 5.192910917 -1.041133083 IGGDAGTS(ph)LNSNDYGYGGQK ddPTM_HeLa_CUDC101_4h_R1 1 IGGDAGTSLNSNDYGYGGQK 20 0 Q96AE4;E9PEB5;Q96AE4-2;C9JSZ1 Q96AE4 FUBP1 Far upstream element-binding protein 1 1 0 IGGDAGT(0.114)S(0.886)LNSNDYGYGGQK 165.58 2.54E-06 8716100 2930.9 2112.8 2227.1 2245.9 2826.9 2773.6 2734.8 2463.5 2493.4 2750.6 TRUE FALSE FALSE 2587.344345 2177.892864 2347.503763 2337.49751 2618.365219 2720.698201 2840.282152 2743.934882 2390.620997 2734.239309 0.946275747 0.79652606 0.858558267 0.854898656 0.957621087 0.995047578 1.038783307 1.003545986 0.874327638 1 11.4169238 -5.192769457 3.197998935 0.941037699 1.019682779 0.25528025 0.066283407 0.372574614 7.465950433 0.01124331 0.031413293 6.42E-06 5.192769457 0.07864508 QSPSPSEVSQS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 1 QSPSPSEVSQSPGR 14 0 A0A5F9ZH11;P55201-3;P55201;P55201-2;C9JHC0;A0A5F9ZHX4;A0A5F9ZHW9;P55201-4 A0A5F9ZH11 BRPF1 Peregrin 1 0 QS(0.106)PS(0.053)PS(0.009)EVS(0.005)QS(0.827)PGR 112.57 0.0029522 4973300 526.83 538.66 499.72 448.84 500.96 595.94 677.43 436.37 701.3 486.07 TRUE FALSE FALSE 465.075786 555.2554761 526.7363748 467.1456353 464.0051789 584.5734374 703.558702 486.0445969 672.3921172 483.178834 0.962533442 1.14917177 1.090147866 0.966817258 0.960317684 1.209849017 1.456104143 1.005931061 1.391600935 1 8.916413448 -5.192640548 5.397252275 1.000660953 1.252310879 0.025270183 0.170349626 0.135866029 7.577634699 0.015417651 0.040089082 6.42E-06 5.192640548 0.251649926 TDNVSDFSES(ph)SDSENSNKR ddPTM_HeLa_CUDC101_4h_R1 1 TDNVSDFSESSDSENSNKR 19 1 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 TDNVSDFS(0.001)ES(0.728)S(0.27)DS(0.001)ENSNKR 110.33 0.00016448 10408000 508.97 517.53 506.94 433.3 669.29 384.3 504.01 419.95 460.78 525.64 TRUE FALSE FALSE 449.3093081 533.4744859 534.3467098 450.9718469 619.9178101 376.9701178 523.4498345 467.7554105 441.7864534 522.5134699 0.859899953 1.02097748 1.022646765 0.863081763 1.186414984 0.721455311 1.001792039 0.895202588 0.845502516 1 9.029324419 -5.19253787 24.99997486 0.95508718 0.88571499 0.118095965 0.11598079 373.7436192 135606.148 0.015266004 0.038920826 6.42E-06 5.19253787 -0.069372189 RPS(ph)VNGEPGSVPPPR ddPTM_HeLa_CUDC101_4h_R1 2 RPSVNGEPGSVPPPR 15 1 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 RPS(1)VNGEPGSVPPPR;RPS(1)VNGEPGSVPPPR ; 144.41 0.00069799 11678000 2172.25 1731.02 2123.26 2018.82 2218.68 1693.47 1410.71 1624.52 2060.25 1930.48 TRUE FALSE FALSE 1917.622148 1784.350674 2238.049858 2101.156206 2055.012397 1661.169881 1465.121557 1809.44879 1975.325623 1918.997419 0.999283339 0.929834848 1.166259963 1.094923935 1.070878145 0.865644667 0.763482818 0.942913613 1.029352934 1 10.90613706 -5.19202834 6.418034406 1.018459177 0.845725185 0.547511026 0.074549622 0.149632289 11.23851212 0.010686975 0.027544331 6.43E-06 5.19202834 -0.172733992 VQIPVSRPDPEPVSDNEEDS(ph)Y(ph)DEEIHDPR ddPTM_HeLa_CUDC101_4h_R1 1 VQIPVSRPDPEPVSDNEEDSYDEEIHDPR 29 1 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2;H0YKB1 G3V1L9 TJP1 Tight junction protein ZO-1 2 0 VQIPVS(0.006)RPDPEPVS(0.433)DNEEDS(0.786)Y(0.775)DEEIHDPR 40.819 0.033165 3951200 1186.2 1264.5 1324.2 1301.2 1409.8 1168.6 1033.8 1097.1 1132.7 1374.2 TRUE FALSE FALSE 1047.155434 1303.457746 1395.790257 1354.26856 1305.801863 1146.310902 1073.674012 1221.989429 1086.009627 1366.026197 0.766570536 0.954196741 1.021788792 0.991392817 0.955912753 0.839157334 0.785983471 0.894557829 0.795013762 1 10.41576944 -5.189253516 8.464707715 0.914123548 0.834078916 0.171742103 0.08380873 0.671559525 73.35413956 0.014752929 0.037749937 6.47E-06 5.189253516 -0.080044632 KTPSKPPAQLS(ph)PSVPK ddPTM_HeLa_CUDC101_4h_R1 1 KTPSKPPAQLSPSVPK 16 2 F5H8D7;P18887;M0QYS5 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 KTPS(0.001)KPPAQLS(0.982)PS(0.017)VPK 73.984 0.021613 60249000 4760.8 4341.2 4723.5 4394.3 4354.7 4114 3260.9 3111.7 4854.1 4989.7 TRUE FALSE FALSE 4202.746241 4474.947226 4978.866698 4573.518548 4033.462457 4035.532304 3386.674005 3465.92335 4654.011943 4960.021042 0.847324276 0.902203275 1.003799511 0.922076441 0.813194626 0.813611932 0.682794282 0.698771904 0.938304879 1 12.27613053 -5.188975221 1.19993013 0.930316598 0.678737966 0.790551514 0.048841812 0.248223971 0.617886219 0.010203118 0.05062632 6.47E-06 5.188975221 -0.251578632 LSAMLVPVT(ph)PEVKPK ddPTM_HeLa_CUDC101_4h_R1 4 LSAMLVPVTPEVKPK 15 1 Q5JSL0;Q5JSK6;P82970;Q5JSK8;Q5JSK7 Q5JSL0 HMGN5 High mobility group nucleosome-binding domain-containing protein 5 1 0 LS(0.002)AMLVPVT(0.998)PEVKPK;LS(0.001)AMLVPVT(0.999)PEVKPK;LS(0.003)AMLVPVT(0.997)PEVKPK;LSAMLVPVT(1)PEVKPK ;;; 111.63 0.0026235 483596000 23483.7 20367.6 19806.9 18989.8 22034.9 18096.6 16484.1 7434 21217.4 22500.2 TRUE FALSE FALSE 20730.97628 20995.10161 20877.72093 19764.28612 20409.42933 17751.43751 17119.89726 8280.256511 20342.80979 22366.36781 0.926881667 0.938690707 0.933442618 0.883660963 0.912505307 0.793666529 0.765430373 0.370210156 0.909526749 1 14.44904337 -4.101910297 0.925573305 0.954978652 8.52E-23 0.929829976 0.045258614 0.471385777 0.249833617 0.00722865 0.483486725 7.91E-05 4.101910297 -0.954978652 down (ac)AMSSGGS(ph)GGGVPEQEDSVLFR ddPTM_HeLa_CUDC101_4h_R1 1 AMSSGGSGGGVPEQEDSVLFR 21 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 0 AMS(0.266)S(0.266)GGS(0.469)GGGVPEQEDSVLFR 73.448 2.52E-05 0 76.483 150.84 71.402 0 152.51 0 0 71.194 72.045 60.683 TRUE FALSE FALSE 67.51777868 155.4872016 75.2622081 0 141.2596411 0 0 79.29843718 69.07527461 60.32205482 1.119288441 2.57761779 1.247673149 0 2.341757779 0 0 1.314584482 1.145108117 1 5.914613668 -5.188772085 24.99999999 1.1822042 0.394375377 0.207170674 0.767465307 188.00645 64679.55425 0.102688601 0.261805614 6.47E-06 5.188772085 -0.787828822 KNTFTAWSDEES(ph)DY(ph)EIDDRDVNK ddPTM_HeLa_CUDC101_4h_R1 1 KNTFTAWSDEESDYEIDDRDVNK 23 2 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50 Q6PKG0 LARP1 La-related protein 1 2 0 KNTFTAWS(0.019)DEES(0.998)DY(0.983)EIDDRDVNK 76.533 0.00058364 18651000 2992.6 2628.2 2370.5 2346.2 2574.7 3222.1 2917.5 2601.2 2819.5 3107.3 TRUE FALSE FALSE 2641.811964 2709.171727 2498.6564 2441.888177 2384.769511 3160.643811 3030.028952 2897.310094 2703.279017 3088.817641 0.855282594 0.877090214 0.808936198 0.790557573 0.772065492 1.023253613 0.980967252 0.937999724 0.875182458 1 11.59283898 -5.188227249 24.99989001 0.896490493 0.980762895 0.291693102 0.071586426 220.0587746 75142.73463 0.013170516 0.033578359 6.48E-06 5.188227249 0.084272402 TPTS(ph)SPASSPLVAK ddPTM_HeLa_CUDC101_4h_R1 1 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 T(0.235)PT(0.009)S(0.376)S(0.376)PAS(0.002)S(0.001)PLVAK 179.46 6.31E-08 79855000 3275.1 2337.7 2189.6 2228.6 2422.1 2451.9 1659.6 1656.1 2428.3 2637.9 TRUE FALSE FALSE 2891.197743 2409.721766 2307.976399 2319.491941 2243.426509 2405.134093 1723.611328 1844.62373 2328.204446 2622.209653 1.102580695 0.918966095 0.88016471 0.884556251 0.855548108 0.91721655 0.657312555 0.703461574 0.887878833 1 11.35656732 -5.187185369 0.452522231 1.048904015 0.585714286 0.533422831 0.083175824 0.920496482 0.215249274 0.020288825 0.198606197 6.50E-06 5.187185369 -0.463189728 AS(ph)PEPQRENAS(ph)PAPGTTAEEAMSR ddPTM_HeLa_CUDC101_4h_R1 1 ASPEPQRENASPAPGTTAEEAMSR 24 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 2 0 AS(0.997)PEPQRENAS(0.997)PAPGT(0.003)T(0.002)AEEAMS(0.001)R 52.143 0.019945 15105000 1365.4 1318.1 1353.5 1086.4 1445.1 1021 1019.3 830.08 1233.8 1048.4 TRUE FALSE FALSE 1205.349882 1358.709099 1426.674304 1130.708088 1338.497852 1001.526126 1058.614742 924.5729519 1182.942242 1042.16407 1.156583609 1.30373819 1.368953646 1.084961687 1.284344654 0.961006194 1.015785108 0.887166405 1.135082542 1 10.02536671 -5.185531167 18.64738662 1.128887354 0.960754695 0.391369524 0.118390091 13.1750595 3235.120386 0.019918279 0.05078263 6.52E-06 5.185531167 -0.168132659 ATGPEAAGGGGAGGGGGGYRPIIQS(ph)PGYK ddPTM_HeLa_CUDC101_4h_R1 1 ATGPEAAGGGGAGGGGGGYRPIIQSPGYK 29 1 Q9ULL5;Q9ULL5-2 Q9ULL5 PRR12 Proline-rich protein 12 1 0 ATGPEAAGGGGAGGGGGGY(0.246)RPIIQS(0.746)PGY(0.008)K 52.329 0.0088961 12162000 1901.7 1732.3 2056.5 1682.2 1508.9 1400.7 1219.5 1153.8 2179.6 2319.2 TRUE FALSE FALSE 1678.785609 1785.67011 2167.680611 1750.807387 1397.591453 1373.983981 1266.536524 1285.143928 2089.755965 2305.405295 0.728195434 0.774557998 0.940260099 0.759435831 0.606223754 0.595983701 0.549376947 0.557448155 0.906459255 1 11.17080469 -5.184722921 0.093188393 1.274791876 1.57E-17 0.738107362 0.080166147 17.85879504 0.385362065 1.607364789 3.950338852 6.54E-06 5.184722921 -1.274791876 S(ph)SLS(ph)GDEEDELFK ddPTM_HeLa_CUDC101_4h_R1 1 SSLSGDEEDELFK 13 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 2 0 S(0.991)S(0.009)LS(1)GDEEDELFK 171.11 4.32E-06 15859000 8816.7 7744.7 6333.4 7964.1 8822.8 8672.5 8513.7 7768.5 8660.8 8643.9 TRUE FALSE FALSE 7783.219791 7983.305027 6675.802761 8288.910422 8171.959621 8507.086512 8842.076261 8652.834639 8303.798158 8592.485698 0.90581702 0.929103092 0.776934987 0.964669679 0.951058856 0.990061178 1.029047539 1.007023455 0.966402325 1 13.06885983 -5.183316183 2.150629363 0.938455795 1.018205347 0.292994159 0.057269714 0.408163919 3.620206319 0.009601827 0.031166 6.56E-06 5.183316183 0.079749551 KVEGNFNPFAS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 2 KVEGNFNPFASPQK 14 1 Q5TH58;Q9H6K1-2;Q9H6K1 Q5TH58 C6orf106 Uncharacterized protein C6orf106 1 0 KVEGNFNPFAS(1)PQK;KVEGNFNPFAS(1)PQK ; 115.91 0.0011436 190051000 13404.6 12587.6 11899.7 10944 12313.1 9890.5 8632.3 7549.9 12883.5 12676.5 TRUE FALSE FALSE 11833.33311 12975.40904 12543.03378 11390.34362 11404.78714 9701.855191 8965.250703 8409.350098 12352.43668 12601.09961 0.939071468 1.029704505 0.995392002 0.90391664 0.905062851 0.769921315 0.711465743 0.667350498 0.980266568 1 13.62126201 -5.180655608 1.101026829 0.976798867 0.657087945 0.946791703 0.028210306 0.112434466 0.227511492 0.005189664 0.028303853 6.60E-06 5.180655608 -0.319710922 ATS(ph)AGSS(ph)PSCSLAGR ddPTM_HeLa_CUDC101_4h_R1 1 ATSAGSSPSCSLAGR 15 0 Q9BXB5-2;Q9BXB5 Q9BXB5-2 OSBPL10 Oxysterol-binding protein-related protein 10 2 0 AT(0.408)S(0.592)AGS(0.055)S(0.816)PS(0.122)CS(0.006)LAGR 121.95 0.0085069 8337700 2143.8 1575.8 1873.9 1839.8 1944.2 2261.7 2551.2 1737.9 1800.8 1833.9 TRUE FALSE FALSE 1892.507014 1624.34853 1975.208702 1914.834996 1800.780239 2218.561841 2649.600639 1935.735511 1726.570262 1822.991881 1.038132442 0.891034429 1.083498354 1.05038043 0.987815831 1.216989425 1.453435238 1.061845382 0.947108037 1 10.83209242 -5.179503602 4.651263306 1.014422812 1.273216686 0.539448796 0.102690371 0.11006803 4.277677656 0.012598152 0.033301187 6.61E-06 5.179503602 0.258793874 KDS(ph)SSEVFSDAAK ddPTM_HeLa_CUDC101_4h_R1 2 KDSSSEVFSDAAK 13 1 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3;A0A1B0GTZ9 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 KDS(0.876)S(0.115)S(0.008)EVFS(0.002)DAAK;KDS(0.707)S(0.222)S(0.07)EVFSDAAK ; 142.35 0.0013795 40436000 5876.6 5123 5474.3 6342.4 7103.2 7627.4 8610.5 7823.7 5665.9 5982 TRUE FALSE FALSE 5187.753856 5280.833558 5770.257217 6601.070486 6579.211088 7481.920053 8942.609869 8714.318384 5432.349204 5946.418798 0.872416497 0.888069565 0.970375181 1.110091756 1.106415695 1.258222858 1.503864792 1.465473368 0.913549716 1 12.53780536 -5.17932357 0.904610345 0.935525819 1.555638756 0.938350956 0.054361106 0.161680163 0.201856183 0.010861004 0.072152057 6.62E-06 5.17932357 0.620112936 S(ph)VELDLNQAHMEETPK ddPTM_HeLa_CUDC101_4h_R1 7 SVELDLNQAHMEETPK 16 0 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 1 0 S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK;S(1)VELDLNQAHMEETPK ;;;;;; 190.37 2.03E-11 206533000 20580.15 17141.5 16124.7 16826.29 17941.58 15728.66 13544.75 12730.09 17300.58 17550.62 TRUE FALSE FALSE 18167.77601 17669.6093 16996.45006 17512.53884 16618.06539 15428.66202 14067.17554 14179.23199 16587.44277 17446.22813 1.041358389 1.012803981 0.97421918 1.003800862 0.952530556 0.884355168 0.806316153 0.812739114 0.950775299 1 14.09062754 -5.17751982 1.094694633 1.017290072 0.788804776 0.881107985 0.027084449 0.09988166 0.199082453 0.003259114 0.017951537 6.64E-06 5.17751982 -0.228485296 TVSLPLS(ph)SPNIK ddPTM_HeLa_CUDC101_4h_R1 2 TVSLPLSSPNIK 12 0 Q8IWZ3;Q8IWZ3-4;Q8IWZ3-6;H0Y785;H0Y472;H0Y4P6;A0A0A0MQZ8;H0Y7Y3 Q8IWZ3 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 0 TVS(0.001)LPLS(0.557)S(0.441)PNIK;TVSLPLS(0.954)S(0.046)PNIK ; 187.62 7.65E-11 170988000 9731 8406 7329.2 7030.9 8796.8 6221.7 6529.7 5126.2 7515.4 7888.7 TRUE FALSE FALSE 8590.346931 8664.978896 7725.438722 7317.650492 8147.87759 6103.031439 6781.552716 5709.745887 7205.612031 7841.777662 1.09545913 1.104976355 0.985164213 0.9331622 1.039034507 0.77827142 0.864797882 0.728118819 0.918874819 1 12.93696502 -5.173152533 0.85448024 1.047795371 0.733662859 0.629566118 0.072985575 0.34168083 0.368719524 0.010608523 0.075114027 6.71E-06 5.173152533 -0.314132512 AAS(ph)PSPQSVR ddPTM_HeLa_CUDC101_4h_R1 3 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 AAS(0.99)PS(0.01)PQSVR;AAS(0.592)PS(0.407)PQS(0.001)VR;AAS(0.93)PS(0.07)PQSVR ;; 127.52 0.0029957 1082620000 11177.6 10008.1 8289 9385.5 9393.5 9237.3 8269.6 7753.8 9309.7 8499.3 TRUE FALSE FALSE 9867.378672 10316.4377 8737.128413 9768.281258 8700.560219 9061.113893 8588.561242 8636.46125 8925.950226 8448.745786 1.167910471 1.22106144 1.034133188 1.156181226 1.029804949 1.072480357 1.016548664 1.022218146 1.056482282 1 13.04452147 -5.17115941 1.45517965 1.093135861 1.020319147 0.181442743 0.065476154 0.828469167 3.190130052 0.012322259 0.052532884 6.74E-06 5.17115941 -0.072816714 SASAPT(ph)LAETEKETAEHLDLAGASSR ddPTM_HeLa_CUDC101_4h_R1 1 SASAPTLAETEKETAEHLDLAGASSR 26 1 Q86W92-2 Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 S(0.018)AS(0.131)APT(0.63)LAET(0.215)EKET(0.006)AEHLDLAGASSR 54.261 0.015811 10259000 383.63 260.72 304.82 376.34 278.33 273.13 203.15 181.38 353.8 326.18 TRUE FALSE FALSE 338.6614729 268.7524742 321.2994912 391.6887719 257.7981504 267.9205003 210.9855636 202.027566 339.2162143 324.2398669 1.044478201 0.828869308 0.99093148 1.208021628 0.795084679 0.826303387 0.650708272 0.623080585 1.046189099 1 8.340917678 -5.169506995 1.491601289 1.012789071 0.629177507 0.671367651 0.101857545 0.183091655 0.744617225 0.014732432 0.061655288 6.77E-06 5.169506995 -0.383611564 GWAFGSNS(ph)LPIAGSVGMGVAR ddPTM_HeLa_CUDC101_4h_R1 2 GWAFGSNSLPIAGSVGMGVAR 21 0 A0A087WZT0;M0QZ22;Q5PRF9 A0A087WZT0 SAMD4B Protein Smaug homolog 2 1 0 GWAFGS(0.025)NS(0.54)LPIAGS(0.436)VGMGVAR;GWAFGS(0.088)NS(0.912)LPIAGSVGMGVAR ; 89.604 0.00073523 20824300 2686.1 2039.9 1678.57 2067.58 1979.84 1555.62 1480.22 1123.22 1586.42 1736.95 TRUE FALSE FALSE 2371.23943 2102.746901 1769.318572 2151.904849 1833.791148 1525.94914 1537.312581 1251.082825 1521.027096 1726.618544 1.373342964 1.217841027 1.024730435 1.246311675 1.062070805 0.883778959 0.890360286 0.724585537 0.880928275 1 10.75373367 -5.168055832 1.29696077 1.178045918 0.770665402 0.438806441 0.141800027 0.317791831 0.942010832 0.02300715 0.108967983 6.79E-06 5.168055832 -0.407380516 S(ph)PAAGSSQSSGWPNDVDAGSPR ddPTM_HeLa_CUDC101_4h_R1 2 SPAAGSSQSSGWPNDVDAGSPR 22 0 C9JWJ8 C9JWJ8 NFIX Nuclear factor 1 1 0 S(1)PAAGSSQSSGWPNDVDAGSPR;S(0.913)PAAGS(0.043)S(0.043)QS(0.002)SGWPNDVDAGSPR ; 110.38 1.67E-05 14940900 1440.36 961.4 1174 1221.03 1213.16 1237.15 967.57 1097.52 1196.35 1171.5 TRUE FALSE FALSE 1271.523184 991.0195945 1237.469991 1270.828881 1123.667604 1213.553425 1004.889499 1222.45724 1147.035947 1164.531866 1.09187496 0.851002556 1.062633001 1.091278752 0.96490928 1.042095507 0.862912839 1.049741339 0.984976006 1 10.1855344 -5.166701993 2.017050095 1.031529538 0.961733657 0 0.082890382 0.604814405 4.693603089 0.011778561 0.040164333 6.81E-06 5.166701993 -0.069795881 SS(ph)SPPILTKPTLK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPPILTKPTLK 13 1 A0A3B3IS53;A0A3F2YNX6;Q92794;A0A3B3ITI3 A0A3B3IS53 KAT6A Histone acetyltransferase KAT6A 1 0 S(0.205)S(0.696)S(0.09)PPILT(0.009)KPTLK 70.54 0.028764 32309000 2760.7 2024.8 2040.3 2222.9 1777.9 2021.7 1495.4 1316.9 2395.1 2221.3 TRUE FALSE FALSE 2437.094931 2087.181688 2150.60479 2313.55947 1646.747859 1983.139441 1553.078079 1466.810573 2296.372964 2208.087609 1.103712969 0.945244056 0.973967147 1.047766158 0.745780128 0.898125343 0.703358903 0.664290025 1.039982723 1 11.1085817 -5.166539122 0.652143986 1.046039313 0.607478213 0.758206498 0.072430175 0.473608555 0.2590268 0.013884154 0.124072498 6.81E-06 5.166539122 -0.438561101 RVTIMPK ddPTM_HeLa_CUDC101_4h_R1 1 RVTIMPK 7 1 K7EK07;P84243;Q6NXT2;A0A590UJL8;Q71DI3;P68431;Q5TEC6;Q16695 K7EK07;Q71DI3 H3F3B;H3F3A;H3F3C;HIST2H3A;HIST1H3A;HIST2H3PS2;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 0 69.198 0.034494 1302200 1664.3 1172.7 674.05 1160.9 1019.3 1100.6 1103 668.97 402.7 92.218 FALSE FALSE TRUE 1469.213277 1208.829497 710.4911819 1208.24652 944.1082697 1079.607889 1145.543079 745.1228407 386.1005356 91.66948323 16.02728875 13.1868257 7.750574748 13.18046614 10.29904649 11.77717874 12.49644963 8.128363054 4.211876427 1 6.518369636 -9.444360578 1.156271438 0.952491145 11.99010665 0.665472723 2.512925414 0.204854033 0.486568171 1.818473774 0.445402325 3.59E-10 9.444360578 11.0376155 (ac)SSIGTGYDLSASTFS(ph)PDGR ddPTM_HeLa_CUDC101_4h_R1 1 SSIGTGYDLSASTFSPDGR 19 0 P25788-2;P25788;G3V3W4;G3V5N4 P25788-2 PSMA3 Proteasome subunit alpha type-3 1 0 SSIGT(0.002)GYDLS(0.005)AS(0.145)T(0.145)FS(0.702)PDGR 72.09 0.0018233 0 417.67 486.56 315.06 439.58 422.13 511.8 520.88 455.52 492.49 443.52 TRUE FALSE FALSE 368.7113557 501.5503369 332.0930966 457.5079724 390.9903109 502.0382677 540.9705161 507.3745555 472.1893537 440.8819233 0.83630409 1.137606943 0.753247251 1.037710889 0.886836793 1.138713658 1.227019044 1.150817325 1.071010919 1 8.784248516 -5.166456347 4.470485201 0.931359947 1.186993319 0.417735273 0.111545479 0.129079917 4.423073778 0.014343962 0.038236715 6.82E-06 5.166456347 0.255633372 SSS(ph)SPELQTLQDILGDPGDKADVGR ddPTM_HeLa_CUDC101_4h_R1 2 SSSSPELQTLQDILGDPGDKADVGR 25 1 P49815;X5D2U8;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4;H3BQK4;A0A2R8Y670 P49815 TSC2 Tuberin 1 0 S(0.048)S(0.048)S(0.844)S(0.06)PELQTLQDILGDPGDKADVGR;S(0.037)S(0.037)S(0.731)S(0.188)PELQT(0.007)LQDILGDPGDKADVGR ; 115.34 4.29E-08 38700000 4440.4 3410 3368.6 3402.2 4419.6 4152.8 4458.8 3978.9 4017.4 3621.3 TRUE FALSE FALSE 3919.903043 3515.058058 3550.716705 3540.956422 4093.574913 4073.592259 4630.77741 4431.841893 3851.801072 3599.760347 1.088934447 0.97647002 0.986375859 0.983664489 1.137179845 1.131628738 1.286412695 1.231149151 1.070015974 1 11.81368515 -5.166381737 1.562262974 1.030348024 1.260181185 0.78682445 0.047510771 0.154933592 0.697410708 0.007837345 0.031721112 6.82E-06 5.166381737 0.229833161 S(ph)ITST(ph)PLSGK ddPTM_HeLa_CUDC101_4h_R1 3 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3 RAI14 Ankycorbin 2 0 S(1)IT(0.001)S(0.18)T(0.807)PLS(0.013)GK;S(1)ITS(0.002)T(0.983)PLS(0.015)GK;S(1)ITS(0.003)T(0.995)PLS(0.002)GK ;; 156.36 0.00035198 91658000 15703.6 16558.8 16907.4 18673.2 24838.8 24307.5 27361 27365.9 14672.9 14417.6 TRUE FALSE FALSE 13862.84781 17068.957 17821.46519 19434.77381 23006.49121 23843.87494 28416.32294 30481.12344 14068.07685 14331.84347 0.967275971 1.19098126 1.243487289 1.356055405 1.605270896 1.663699089 1.982740252 2.126811076 0.981595764 1 13.80693657 -5.164880911 0.500350418 0.966633835 2.416926655 0.981634382 0.053706754 0.190928136 0.055332212 0.013851217 0.138698813 6.84E-06 5.164880911 1.45029282 up EGS(ph)PEPWLPLTDGR ddPTM_HeLa_CUDC101_4h_R1 2 EGSPEPWLPLTDGR 14 0 J3KSM5;Q494U1-3;Q494U1;Q494U1-2 J3KSM5 PLEKHN1 Pleckstrin homology domain-containing family N member 1 1 0 EGS(0.98)PEPWLPLT(0.02)DGR;EGS(0.991)PEPWLPLT(0.009)DGR ; 102.28 0.0064896 5979800 1817.8 1478.62 1668.5 1691.98 1788.87 1253.18 1084.93 951.12 1690.31 1671 TRUE FALSE FALSE 1604.72024 1524.17453 1758.704157 1760.986258 1656.908624 1229.277679 1126.776114 1059.391656 1620.634706 1661.060818 0.966081568 0.917591044 1.058783723 1.060157605 0.997500276 0.740055792 0.678347296 0.637780173 0.975662474 1 10.69788918 -5.164327968 3.280533092 0.991410697 0.665530803 0.922632692 0.041642585 0.051682522 1.054116585 0.006489317 0.018343059 6.85E-06 5.164327968 -0.325879894 EGTQASEGYFSQS(ph)QEEEFAQSEELCAK ddPTM_HeLa_CUDC101_4h_R1 2 EGTQASEGYFSQSQEEEFAQSEELCAK 27 0 Q16643-3;Q16643;Q16643-2 Q16643-3 DBN1 Drebrin 1 0 EGTQASEGY(0.001)FS(0.032)QS(0.962)QEEEFAQS(0.004)EELCAK;EGTQASEGY(0.001)FS(0.011)QS(0.988)QEEEFAQSEELCAK ; 105.52 9.96E-08 22227800 6018.5 5647.3 4783.5 4789 5652.7 4625.7 4362.9 3918.7 5893.3 4564.8 TRUE FALSE FALSE 5313.020553 5821.286619 5042.110479 4984.31612 5235.711583 4537.472479 4531.178514 4364.788968 5650.37568 4537.648367 1.170875335 1.282886233 1.111172588 1.098435956 1.153838103 0.999961238 0.998574184 0.96190551 1.245221142 1 12.1477291 -5.162915512 5.93893965 1.105818307 0.985380276 0.379594414 0.083320107 0.253234012 12.63095802 0.013035707 0.033843081 6.87E-06 5.162915512 -0.120438031 RVWGSPGGEGTGDLDEFDF ddPTM_HeLa_CUDC101_4h_R1 1 RVWGSPGGEGTGDLDEFDF 19 1 B4E321;Q13438-8;Q13438-6;Q13438-5;Q13438-3;Q13438-2;Q13438-7;Q13438-4;Q13438 B4E321 OS9 Protein OS-9 0 0 111.31 0.0050361 8059300 1151.2 1263 1074.6 1247.7 1396.4 1045.6 749.73 1009.6 1211.7 960.99 FALSE FALSE TRUE 1016.258081 1301.911533 1132.696126 1298.586599 1293.390354 1025.656922 778.6473372 1124.528783 1161.753213 955.2739887 1.063839373 1.362867144 1.185729058 1.359386537 1.353947003 1.073678268 0.815103673 1.177179319 1.2161466 1 9.899770772 -7.488652504 15.52777713 1.028155784 1.185652595 0.027896552 0.166120845 7.187082012 3261.163147 0.028882071 0.032072354 3.25E-08 7.488652504 0.15749681 RWDDDVVFK ddPTM_HeLa_CUDC101_4h_R1 1 RWDDDVVFK 9 1 Q9P013 Q9P013 CWC15 Spliceosome-associated protein CWC15 homolog 0 0 121.5 0.0055798 14532000 1867.4 1782.5 1657.7 1994.5 1591.3 1825.5 1635.4 1721.4 1900.1 1813 FALSE FALSE TRUE 1648.506203 1837.416712 1747.320276 2075.844331 1473.912969 1790.681629 1698.477926 1917.357218 1821.777074 1802.216195 0.91471057 1.019531795 0.96953977 1.151828696 0.817833606 0.993599788 0.942438499 1.063888574 1.010853791 1 10.81555637 TQS(ph)SLTVSEVLTR ddPTM_HeLa_CUDC101_4h_R1 2 TQSSLTVSEVLTR 13 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 T(0.144)QS(0.855)S(0.001)LTVSEVLTR;T(0.021)QS(0.411)S(0.316)LT(0.251)VS(0.001)EVLTR ; 226.06 6.45E-33 184105000 2107.4 1414.39 1465.96 1772.72 1870.43 1404.29 1293.57 1068.82 1458.97 1692.59 TRUE FALSE FALSE 1860.373767 1457.965679 1545.214232 1845.019184 1732.452105 1377.505508 1343.463428 1190.490148 1398.830639 1682.522399 1.1057052 0.866535673 0.918391477 1.09657927 1.029675507 0.818714514 0.798481749 0.707562734 0.831389014 1 10.71641 -5.161387202 2.942637679 1.02978581 0.758905283 0.429186868 0.097016356 0.122333721 2.031903522 0.012011302 0.035059783 6.90E-06 5.161387202 -0.270880527 AS(ph)PHDVLETIFVR ddPTM_HeLa_CUDC101_4h_R1 2 ASPHDVLETIFVR 13 0 H0YCL5;H0YEM7;O75143-4;O75143-3;O75143-2;O75143;O75143-5 H0YCL5 ATG13 Autophagy-related protein 13 1 0 AS(1)PHDVLETIFVR;AS(1)PHDVLETIFVR ; 90.725 0.0017303 1332200 2421.88 2329.07 1949.24 1916.87 2328.25 1864.68 1705.57 1622.92 2326.47 1917.73 TRUE FALSE FALSE 2137.990898 2400.825886 2054.621811 1995.048244 2156.499636 1829.114336 1771.354406 1807.666653 2230.571922 1906.323257 1.121525896 1.259401247 1.077792973 1.046542467 1.131235025 0.959498516 0.929199389 0.948247705 1.170091124 1 10.89657706 -5.16082047 5.798207932 1.079046984 0.940755124 0.492319186 0.072783861 0.190240715 9.067016787 0.011337011 0.029485838 6.91E-06 5.16082047 -0.13829186 ATGDGSS(ph)PELPSLER ddPTM_HeLa_CUDC101_4h_R1 1 ATGDGSSPELPSLER 15 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 0 ATGDGS(0.38)S(0.62)PELPSLER 238.07 1.90E-43 32190000 4938.7 4616.5 3788.1 4049.7 5093.7 3729.3 3472 3185.8 4306.5 4236.8 TRUE FALSE FALSE 4359.793073 4758.728893 3992.896144 4214.86427 4717.947899 3658.169816 3605.916203 3548.458595 4128.984247 4211.599325 1.035187048 1.129910166 0.948071228 1.000775227 1.120227148 0.868593979 0.856186908 0.842544202 0.980383918 1 12.04015248 -5.158964419 7.115613395 1.025073661 0.853282762 0.684813049 0.05432566 0.109379511 6.652077979 0.007211832 0.018556875 6.93E-06 5.158964419 -0.171790899 RQEQPSIESTS(ph)PISR ddPTM_HeLa_CUDC101_4h_R1 1 RQEQPSIESTSPISR 15 1 Q5T5P2;Q5T5P2-3 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 RQEQPSIES(0.015)T(0.23)S(0.755)PISR 140.77 0.00086936 7176200 4020.9 3909.1 3514.7 3566.2 4075 3431.1 3052.6 2999.7 4174.3 3842.6 TRUE FALSE FALSE 3549.576197 4029.534738 3704.715313 3711.64505 3774.395369 3365.657484 3170.339805 3341.173723 4002.233587 3819.744044 0.929270694 1.05492271 0.969885749 0.971699938 0.988127823 0.881121207 0.829987499 0.874711416 1.047775333 1 11.89926025 -5.157477228 4.033731817 0.974566608 0.853086397 0.684674245 0.039868684 0.103573328 2.957356041 0.005296836 0.014381736 6.96E-06 5.157477228 -0.121480211 KSS(ph)PSVKPAVDPAAAK ddPTM_HeLa_CUDC101_4h_R1 1 KSSPSVKPAVDPAAAK 16 2 H3BV90;Q6FI81-3;Q6FI81;H3BPG7;H3BT65 H3BV90 CIAPIN1 Anamorsin 1 0 KS(0.28)S(0.615)PS(0.105)VKPAVDPAAAK 60.561 0.023784 704370000 4679.9 3815 4118.7 3836.2 3984.1 3528.9 3314.5 2779.6 3811.5 3668 TRUE FALSE FALSE 4131.329216 3932.535628 4341.36938 3992.656817 3690.20088 3461.592112 3442.341375 3096.018428 3654.388357 3646.182573 1.133056048 1.078535029 1.190661546 1.095023833 1.012072436 0.949374323 0.944094627 0.849112288 1.002250514 1 11.83217109 -5.157065503 1.49519226 1.077698165 0.886315043 0.645204597 0.056945389 0.252686768 1.031131159 0.010097362 0.042792455 6.97E-06 5.157065503 -0.191383122 (ac)MNS(ph)SDEEKQLQLITSLK ddPTM_HeLa_CUDC101_4h_R1 1 MNSSDEEKQLQLITSLK 17 1 A0MZ66-4;A0MZ66;A0MZ66-3;A0MZ66-2 A0MZ66-4 KIAA1598 Shootin-1 1 0 MNS(0.499)S(0.499)DEEKQLQLIT(0.001)SLK 48.112 0.039367 4903700 1424.6 1177.5 1034.3 1298 1317.5 1520.5 1428.2 1452.1 1392.6 1328 TRUE FALSE FALSE 1257.610548 1213.777379 1090.217387 1350.93805 1220.31065 1491.498996 1483.286152 1617.401194 1335.196439 1320.100997 0.952662372 0.919457967 0.825859074 1.023359617 0.924407036 1.129837035 1.12361566 1.225210191 1.011435066 1 10.36643259 -5.155635999 3.889317128 0.961430778 1.165600453 0.721023503 0.059395596 0.100256365 2.696535604 0.008501668 0.023252371 6.99E-06 5.155635999 0.204169675 (ac)SETAPLAPT(ph)IPAPAEKTPVKK ddPTM_HeLa_CUDC101_4h_R1 1 SETAPLAPTIPAPAEKTPVKK 21 2 P16402 P16402 HIST1H1D Histone H1.3 1 0 S(0.012)ET(0.012)APLAPT(0.81)IPAPAEKT(0.165)PVKK 70.942 0.00013346 60944000 2233.7 2374 3002.4 2681.9 2154.1 1646.9 1573 906.91 1813.3 2437.1 TRUE FALSE FALSE 1971.869072 2447.140126 3164.718826 2791.279474 1995.196335 1615.488126 1633.671137 1010.148969 1738.555007 2422.604021 0.813946091 1.010127988 1.306329387 1.152181475 0.823575094 0.66683953 0.674345094 0.416968254 0.71763895 1 11.2423429 -5.155534047 1.850350967 0.965221115 0.538441659 0.553359763 0.166200885 0.23220232 1.503056876 0.025584167 0.092896287 6.99E-06 5.155534047 -0.426779457 RYDDPEVQK ddPTM_HeLa_CUDC101_4h_R1 2 RYDDPEVQK 9 1 P38646;D6RJI2;A0A3B3ITI4 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 0 ; ; 167.93 3.69E-06 46188000 10539.3 9247.8 8611.5 9442.8 9178.3 9488.3 7665.2 7722.7 7425 8136.1 FALSE FALSE TRUE 9303.899231 9532.713757 9077.063738 9827.918199 8501.235095 9307.326486 7960.849332 8601.820952 7118.938357 8087.706115 1.150375533 1.17866718 1.122328582 1.215167572 1.051130565 1.150799294 0.984314862 1.063567448 0.88021724 1 12.98151486 -3.034039715 10.27157821 1.089173346 0.647208064 0 0.09860993 0 0 0.011168388 0 0.000924614 3.034039715 -0.441965282 RYDDPEVQK(ac)DIK ddPTM_HeLa_CUDC101_4h_R1 2 RYDDPEVQKDIK 12 2 P38646;D6RJI2;A0A3B3ITI4 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 1 ; RYDDPEVQK(1)DIK;RYDDPEVQK(1)DIK 158.25 2.96E-05 6988300 5342.8 4235 3530.9 4546.7 5573 4553.4 4374.9 4141.3 4157 4206.2 FALSE TRUE FALSE 4716.525083 4365.47533 3721.791134 4732.134079 5161.890893 4466.551481 4543.641358 4612.728852 3985.646701 4181.181335 1.128036482 1.044077016 0.890129089 1.131769636 1.234553223 1.068251081 1.086688425 1.103211863 0.953234596 1 12.0296949 TRLST(ph)ASEETVQNR ddPTM_HeLa_CUDC101_4h_R1 1 TRLSTASEETVQNR 14 1 H7C3R4;O43379-3;O43379-2;O43379;O43379-4 H7C3R4 WDR62 WD repeat-containing protein 62 1 0 T(0.001)RLS(0.084)T(0.689)AS(0.205)EET(0.021)VQNR 160.63 0.00078267 6692600 700.23 629.45 802.83 643.18 1010.3 1085.4 1171.1 1168.5 858.02 869.71 TRUE FALSE FALSE 618.1501009 648.8426084 846.2334182 669.4116605 935.7721818 1064.697803 1216.269719 1301.517317 822.6520524 864.5369262 0.71500717 0.750508843 0.978828541 0.774300831 1.082397007 1.231523803 1.406845309 1.505450233 0.951552244 1 9.755783776 -5.154632795 1.296845831 0.854599039 1.500251465 0.854605048 0.09817327 0.165983748 0.490154015 0.01885542 0.09084099 7.00E-06 5.154632795 0.645652426 AMSTTSIS(ph)SPQPGK ddPTM_HeLa_CUDC101_4h_R1 3 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-2;Q9UJU6-6;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 AMSTT(0.001)S(0.028)IS(0.65)S(0.321)PQPGK;AMSTTS(0.007)IS(0.762)S(0.231)PQPGK;AMSTTS(0.003)IS(0.498)S(0.498)PQPGK ;; 210.91 8.95E-24 438189000 28936.7 22642.3 23050.8 21763.6 23510.3 19905.1 18804.3 15759 24931.9 26349.7 TRUE FALSE FALSE 25544.78389 23339.88243 24296.99597 22651.21368 21775.99201 19525.44338 19529.58815 17552.94086 23904.19653 26192.97081 0.975253402 0.891074273 0.927615128 0.864782152 0.83136778 0.745445926 0.745604166 0.670139366 0.912618759 1 14.67689208 -5.153908865 0.396339959 1.002095285 0.568127848 0.890780723 0.033728411 0.317526755 0.054900347 0.005902642 0.058630408 7.02E-06 5.153908865 -0.433967437 RYEEDMYWR ddPTM_HeLa_CUDC101_4h_R1 3 RYEEDMYWR 9 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 0 ;; ;; 131.12 0.003194 36571400 6120.7 5521.2 4593.2 4874.2 5603.8 5313.9 4645.3 5150.2 4880.1 3938.8 FALSE FALSE TRUE 5403.240824 5691.301628 4841.522286 5072.990944 5190.418838 5212.546211 4824.470777 5736.47795 4678.940212 3915.371842 1.38000707 1.453578832 1.236542142 1.295660067 1.325651572 1.331302982 1.232187126 1.465117026 1.195018098 1 11.93493361 -9.242894886 0.890863221 0.99199698 1.33606548 0.470379831 0.094280359 0.244004832 0.335558834 0.056195714 0.014169926 5.72E-10 9.242894886 0.344068499 RYEEIVK ddPTM_HeLa_CUDC101_4h_R1 1 RYEEIVK 7 1 Q5VTE0;P68104;A0A087WVQ9;A0A087WV01 Q5VTE0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 0 0 90.37 0.034513 13060000 3095.6 3057.8 2850 3165.4 3351.1 3116.7 2607.7 2842.1 4086.8 4228 FALSE FALSE TRUE 2732.738461 3152.007194 3004.079621 3294.498694 3103.896029 3057.25414 2708.279863 3165.633176 3918.340374 4202.851668 0.650210542 0.749968698 0.714771745 0.783872226 0.738521431 0.727423755 0.644391017 0.753210778 0.932305178 1 12.03715282 -9.358317589 0.960367746 1.008758537 0.716491735 0.81896789 0.04584454 0.171067765 0.268687397 0.036066704 0.008332483 4.38E-10 9.358317589 -0.292266803 AMSTTSISS(ph)PQPGK ddPTM_HeLa_CUDC101_4h_R1 2 AMSTTSISSPQPGK 14 0 B4DDD6;Q9UJU6-4;Q9UJU6-2;Q9UJU6-6;Q9UJU6-3;H0Y5J4;Q9UJU6-5;Q9UJU6 B4DDD6;H0Y5J4 DBNL Drebrin-like protein 1 0 AMSTTSIS(0.006)S(0.993)PQPGK;AMSTTS(0.001)IS(0.266)S(0.733)PQPGK ; 181.76 1.27E-16 216350000 12133 9165.4 9785.3 8772.7 10442.1 7567.9 7265.7 6008.6 10782.3 10330 TRUE FALSE FALSE 10710.78813 9447.77511 10314.32292 9130.488625 9671.807087 7423.554916 7545.940483 6692.594736 10337.84903 10268.5567 1.043066562 0.920068456 1.004456928 0.889169617 0.941885736 0.722940442 0.73485892 0.651756126 1.006748011 1 13.3259458 -5.151211628 0.680926942 1.017481113 0.598052222 0.887085287 0.044397943 0.266118609 0.160568673 0.007757379 0.068754477 7.06E-06 5.151211628 -0.419428891 RYFGGTEDR ddPTM_HeLa_CUDC101_4h_R1 4 RYFGGTEDR 9 1 Q16658 Q16658 FSCN1 Fascin 0 0 ;;; ;;; 99.788 0.01876 39242600 10200.5 8721.1 8649.4 8392.2 9206 7952.4 8013.6 8950.3 8456.3 5446.5 FALSE FALSE TRUE 9004.812853 8989.786754 9117.012727 8734.47019 8526.891721 7800.72122 8322.687236 9969.165974 8107.727735 5414.103976 1.663213875 1.660438513 1.683937502 1.613280836 1.574940518 1.440814815 1.537223384 1.841332567 1.497519769 1 12.40250688 -9.194438629 0.787391899 0.970833493 1.622024711 0.273934489 0.180711835 0.218499843 0.227730769 0.088998877 0.021243463 6.39E-10 9.194438629 0.651191217 NS(ph)LESISSIDR ddPTM_HeLa_CUDC101_4h_R1 2 NSLESISSIDR 11 0 A0A0G2JMS7;A0A0G2JNZ2;A0A669KB89;Q14160-2;Q14160;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 0 NS(1)LESISSIDR;NS(0.999)LES(0.001)ISSIDR ; 138.21 0.0015092 32403000 2585.3 2114.3 1864.45 2021.17 1843.9 1653 1705.63 1149.59 2246.1 2854.8 TRUE FALSE FALSE 2282.255053 2179.439077 1965.247807 2103.602049 1707.879171 1621.471779 1771.41672 1280.454679 2153.514807 2837.819523 0.8042284 0.767997774 0.692520363 0.741274078 0.601827973 0.571379457 0.62421754 0.451210751 0.758862496 1 11.47056713 -5.148805903 0.121550099 1.213814082 9.69E-19 0.657404395 0.083705059 3.553172016 0.101593966 0.26375541 0.840276624 7.10E-06 5.148805903 -1.213814082 SAVQKPPS(ph)TGSAPAIESVD ddPTM_HeLa_CUDC101_4h_R1 1 SAVQKPPSTGSAPAIESVD 19 1 Q9NUQ3;Q9NUQ3-2 Q9NUQ3 TXLNG Gamma-taxilin 1 0 SAVQKPPS(0.464)T(0.137)GS(0.35)APAIES(0.049)VD 112.91 0.0011397 11908000 5079.3 4527 4593.4 3757.2 4675.5 4659.3 4484.5 4655.7 5130.1 4775.2 TRUE FALSE FALSE 4483.912154 4666.471504 4841.733098 3910.434856 4330.59768 4570.431615 4657.468667 5185.686069 4918.635107 4746.796898 0.944618497 0.98307798 1.020000055 0.823804966 0.912319986 0.962845412 0.981181367 1.092460069 1.036200877 1 12.21273861 -5.146899486 0.002282636 1.92556826 8.52E-09 0 0.069563266 564495.8386 279.535842 116526.963 119291.2715 7.13E-06 5.146899486 -1.925568251 STSAPQMSPGSSDNQSS(ph)SPQPAQQK ddPTM_HeLa_CUDC101_4h_R1 2 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 STSAPQMSPGSSDNQS(0.006)S(0.497)S(0.497)PQPAQQK;STSAPQMSPGSSDNQS(0.005)S(0.606)S(0.389)PQPAQQK ; 145.19 6.35E-10 15247900 8115.3 6578.2 6798.9 6121.2 7693.9 6156.2 5326.9 5400.9 7675.1 6773.4 TRUE FALSE FALSE 7164.036836 6780.866545 7166.4691 6370.848994 7126.336325 6038.780742 5532.360317 6015.716625 7358.729129 6733.111516 1.064000918 1.007092565 1.064362158 0.946196863 1.058401648 0.896878171 0.821664739 0.893452694 1.092916568 1 12.71705764 -5.144479416 4.286969954 1.026807265 0.857909249 0.749797136 0.043207301 0.075309363 2.28960723 0.005443037 0.014687008 7.17E-06 5.144479416 -0.168898016 LPSSSGLPAADVSPATAEEPLS(ph)PSTPTR ddPTM_HeLa_CUDC101_4h_R1 2 LPSSSGLPAADVSPATAEEPLSPSTPTR 28 0 O43149 O43149 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 1 0 LPSSSGLPAADVSPATAEEPLS(0.728)PS(0.205)T(0.059)PT(0.009)R;LPSSSGLPAADVSPATAEEPLS(0.806)PS(0.138)T(0.047)PT(0.009)R ; 130.49 4.53E-15 16518500 5062.4 3839.6 3427.3 3824.4 4719.3 5340.4 5346.1 5406.4 3472.3 3524.3 TRUE FALSE FALSE 4468.993146 3957.893525 3612.590205 3980.375562 4371.166641 5238.540768 5552.300868 6021.842723 3329.170324 3503.337307 1.275638842 1.129749487 1.031185378 1.136166807 1.247715038 1.495300141 1.584860486 1.718887505 0.950285409 1 11.77451418 -5.143927032 1.450389648 1.123822035 1.6876944 0.867035345 0.090792608 0.144708364 0.550438431 0.01632737 0.072114692 7.18E-06 5.143927032 0.563872365 EELDT(ph)DEY(ph)EET(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 EELDTDEYEETK 12 0 Q8WZA0;Q8WZA0-2 Q8WZA0 LZIC Protein LZIC 3 0 EELDT(1)DEY(1)EET(1)K 75.02 0.018733 33821000 5652.8 5902.9 5592.9 5415 6155.3 6199.2 6090.1 5314.9 6229 6627.3 TRUE FALSE FALSE 4990.187353 6084.761352 5895.269092 5635.847106 5701.235782 6080.960589 6324.997197 5919.926732 5972.237984 6587.880525 0.757479941 0.923629585 0.894865818 0.855487146 0.865412747 0.923052652 0.960095918 0.898608697 0.906549225 1 12.68559868 -5.143626455 5.688145287 0.883265093 0.932002592 0.09077477 0.058965183 0.597012721 25.60893257 0.012647558 0.032990352 7.18E-06 5.143626455 0.048737499 ADSHEGEVAEGKLPS(ph)PPGPQELLDSPPALYAEPLDSLR ddPTM_HeLa_CUDC101_4h_R1 1 ADSHEGEVAEGKLPSPPGPQELLDSPPALYAEPLDSLR 38 1 Q99704-3;Q99704 Q99704-3 DOK1 Docking protein 1 1 0 ADS(0.002)HEGEVAEGKLPS(0.763)PPGPQELLDS(0.231)PPALY(0.004)AEPLDSLR 43.566 0.010738 14694000 1244.5 1119.6 1012.7 1030.8 1083.4 1225.4 1172.3 1045.7 1313.4 1135.9 TRUE FALSE FALSE 1098.621597 1154.093549 1067.449625 1072.840479 1003.47974 1202.027537 1217.516004 1164.738261 1259.261096 1129.143616 0.972968877 1.022096332 0.94536214 0.950136426 0.888708687 1.064547963 1.078264967 1.031523576 1.115235545 1 10.14101328 -5.142408195 19.58531634 0.977823465 1.060151228 0.252037409 0.056822055 2.46489611 397.4361619 0.005334527 0.013600551 7.20E-06 5.142408195 0.082327763 SEWLDPS(ph)QKSPLHVGETR ddPTM_HeLa_CUDC101_4h_R1 2 SEWLDPSQKSPLHVGETR 18 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 0 SEWLDPS(0.541)QKS(0.458)PLHVGET(0.001)R;SEWLDPS(0.999)QKSPLHVGETR ; 119.62 5.24E-05 137409000 2148.5 2107.99 1819.27 2056.76 2059.5 1933.05 1567.52 1617.71 2018.6 2148 TRUE FALSE FALSE 1896.656087 2172.934673 1917.625239 2140.643563 1907.574788 1896.180292 1627.979771 1801.863567 1935.392454 2135.2236 0.888270477 1.017661416 0.898091066 1.002538358 0.893384088 0.888047646 0.762439948 0.84387582 0.906412075 1 11.06017144 -5.141952293 1.895246895 0.950657926 0.804205001 0.554236223 0.049866985 0.202670366 1.379583722 0.007787526 0.028241851 7.21E-06 5.141952293 -0.146452925 TVS(ph)PGS(ph)VSPIHGQGQVVENLK ddPTM_HeLa_CUDC101_4h_R1 2 TVSPGSVSPIHGQGQVVENLK 21 0 A0A087WVF7;Q9NZM3-2;Q9NZM3;Q9NZM3-4;Q9NZM3-3 A0A087WVF7 ITSN2 Intersectin-2 2 0 T(0.298)VS(0.424)PGS(0.862)VS(0.416)PIHGQGQVVENLK;T(0.12)VS(0.833)PGS(0.841)VS(0.206)PIHGQGQVVENLK ; 92.275 0.0017163 36035000 5524.6 4602 4179.1 4578.8 5224.7 3909.4 4115.7 3514.9 5196.3 4868.8 TRUE FALSE FALSE 4877.014763 4743.782165 4405.034787 4765.543255 4839.28429 3834.834709 4274.443928 3915.022008 4982.106315 4839.840161 1.007680956 0.980152651 0.910161212 0.984648893 0.999885147 0.792347388 0.883178738 0.808915559 1.029394804 1 12.24074369 -5.140877568 0.68830677 1.001185082 0.785692534 0.673919752 0.046554623 0.531631429 0.3275355 0.00798047 0.07121755 7.23E-06 5.140877568 -0.215492548 TAPAAPAEDAVAAAAAAPSEPSEPS(ph)RPSPQPKPR ddPTM_HeLa_CUDC101_4h_R1 2 TAPAAPAEDAVAAAAAAPSEPSEPSRPSPQPKPR 34 2 Q53GA4 Q53GA4 PHLDA2 Pleckstrin homology-like domain family A member 2 1 0 TAPAAPAEDAVAAAAAAPS(0.002)EPS(0.009)EPS(0.495)RPS(0.495)PQPKPR;TAPAAPAEDAVAAAAAAPS(0.003)EPS(0.105)EPS(0.446)RPS(0.446)PQPKPR ; 107.36 3.01E-15 628070000 7668.1 6582.7 6488.1 6163.2 6064.5 5895.3 4687.8 4187.9 6073.5 6617 TRUE FALSE FALSE 6769.256942 6785.505185 6838.866311 6414.561936 5617.133917 5782.856975 4868.610016 4664.633608 5823.147759 6577.64179 1.029131284 1.031601507 1.039714008 0.975206942 0.853973825 0.879168729 0.740175609 0.709165041 0.885294144 1 12.68335473 -5.135504184 0.882139979 1.018677107 0.682359195 0.796100444 0.05184858 0.153473851 0.175893849 0.005133862 0.037196748 7.32E-06 5.135504184 -0.336317912 GSPSVAASS(ph)PPAIPK ddPTM_HeLa_CUDC101_4h_R1 1 GSPSVAASSPPAIPK 15 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 0 GSPS(0.004)VAAS(0.261)S(0.734)PPAIPK 151.66 0.00018712 9244000 2731 2775.8 2446.3 2099 2689.7 2097.7 1839.2 1708.3 2841.9 2477.7 TRUE FALSE FALSE 2410.87632 2861.319108 2578.554378 2184.606293 2491.28619 2057.689868 1910.13856 1902.765967 2724.755679 2462.96253 0.978852212 1.161738789 1.046932037 0.886983162 1.011499834 0.835453176 0.775545116 0.772551731 1.106291974 1 11.26617896 -5.133898174 1.588419376 1.003885234 0.760104903 0.677032483 0.07282483 0.185781492 0.863954753 0.009968796 0.04134224 7.35E-06 5.133898174 -0.243780331 TAVPPLSEGDGYS(ph)SENTSR ddPTM_HeLa_CUDC101_4h_R1 1 TAVPPLSEGDGYSSENTSR 19 0 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 TAVPPLSEGDGYS(0.794)S(0.196)ENT(0.005)S(0.005)R 173.98 1.22E-07 9802800 2557.6 2286.4 1777.7 1983.8 2344.4 1645.3 1794.3 1382.2 2312.1 2075.1 TRUE FALSE FALSE 2257.802005 2356.841274 1873.807839 2064.707939 2171.458283 1613.918644 1863.506752 1539.544061 2216.794259 2062.757213 1.09455538 1.142568432 0.908399606 1.000945689 1.052696977 0.782408435 0.903405762 0.746352528 1.074675316 1 11.01035831 -5.133648307 0.932688232 1.04660792 0.765075151 0.633089022 0.076231249 0.40866379 0.538218528 0.012427875 0.085453741 7.35E-06 5.133648307 -0.281532768 QSGLSSLVNGKS(ph)PIR ddPTM_HeLa_CUDC101_4h_R1 2 QSGLSSLVNGKSPIR 15 1 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 0 QSGLSSLVNGKS(1)PIR;QSGLSSLVNGKS(1)PIR ; 132.4 0.0018693 101585000 3684.1 2916 3012.7 3438 3628.7 3663.6 3285.4 2505.4 3574.1 3354.6 TRUE FALSE FALSE 3252.255383 3005.838504 3175.575675 3578.2165 3361.01803 3593.722934 3412.118979 2790.604609 3426.774085 3334.64669 0.975292343 0.901396395 0.952297491 1.073042164 1.007908286 1.077692262 1.023232533 0.836851657 1.027627333 1 11.7033182 -5.133021649 0.002143564 1.265378178 0.706487209 0.00670949 0.07076061 2486032.706 1170.643971 150951.8333 154280.6015 7.36E-06 5.133021649 -0.558890969 EDKSPSEESAPTT(ph)SPESVSGSVPSSGSSGR ddPTM_HeLa_CUDC101_4h_R1 1 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 P54725-2;P54725-3;P54725;A0A494C0B4 P54725-2 RAD23A UV excision repair protein RAD23 homolog A 1 0 EDKSPSEESAPT(0.008)T(0.496)S(0.496)PESVSGSVPSSGSSGR 133.91 1.91E-16 120620000 4578.5 3722.7 4205.7 3698.5 4283 4486.5 4291.9 3965.9 4819.8 4364.4 TRUE FALSE FALSE 4041.815171 3837.391975 4433.072864 3849.340816 3967.051623 4400.927488 4457.440021 4417.362025 4621.125804 4338.440355 0.931628613 0.884509561 1.021812564 0.88726374 0.914395796 1.014403133 1.027429135 1.018191254 1.065158312 1 12.08296078 -5.131802173 7.031640033 0.955564555 1.022230621 0.210760819 0.055144763 0.249401532 13.12719904 0.006672104 0.017189274 7.38E-06 5.131802173 0.066666066 TAS(ph)LPGYGR ddPTM_HeLa_CUDC101_4h_R1 1 TASLPGYGR 9 0 O14639-3;O14639-5;J3QSX6;O14639-4;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 1 0 T(0.05)AS(0.944)LPGY(0.006)GR 92.239 0.025517 188590000 1976.5 1848.5 1742.8 1809.4 1871.6 1285.4 1209.3 842.01 1911.1 1850.8 TRUE FALSE FALSE 1744.817666 1905.450094 1837.02104 1883.195153 1733.535797 1260.883137 1255.943106 937.8610149 1832.323649 1839.791359 0.948378009 1.035688142 0.998494221 1.023591693 0.942245863 0.685340286 0.682655182 0.509764876 0.995941002 1 10.84532645 -5.131411424 1.813154922 0.986451269 0.579384774 0.93617691 0.044419721 0.065288458 0.40442523 0.006669606 0.025173928 7.39E-06 5.131411424 -0.407066495 RYTCGEAPDYDR ddPTM_HeLa_CUDC101_4h_R1 2 RYTCGEAPDYDR 12 1 A0A0A0MTN3;P21266 A0A0A0MTN3 GSTM3 Glutathione S-transferase Mu 3 0 0 ; ; 117.7 0.0039921 70846000 5436.4 4801.5 5685.7 5371.3 6409.5 5152.6 5225.4 4835 5805.2 4078.2 FALSE FALSE TRUE 4799.153433 4949.428524 5993.08614 5590.364831 5936.683955 5054.32274 5426.945428 5385.396856 5565.907199 4053.942685 1.183823701 1.220892575 1.478335193 1.378994541 1.464422271 1.246767192 1.338683314 1.328434385 1.372961492 1 11.98510998 -7.682938909 0.799496605 1.036786302 1.368223817 0.086037901 0.130129393 0.193340768 0.265285428 0.023102811 0.021107751 2.08E-08 7.682938909 0.331437516 KPALPVS(ph)PAAR ddPTM_HeLa_CUDC101_4h_R1 1 KPALPVSPAAR 11 1 A0A087X0M4;Q9BWU0;A0A087WWF4 A0A087X0M4 SLC4A1AP Kanadaptin 1 0 KPALPVS(1)PAAR 73.758 0.027992 204350000 4263 4996.6 4023.7 4021 3958.2 3344.7 2680.7 2338.6 4012.6 4259.6 TRUE FALSE FALSE 3763.297602 5150.539324 4241.233393 4184.99376 3666.211472 3280.90542 2784.095497 2604.816771 3847.19893 4234.26371 0.888772608 1.2163955 1.00164602 0.988363987 0.865843916 0.774846737 0.657515849 0.615175849 0.908587465 1 12.04789541 -5.129798417 1.437786372 0.975593082 0.617538316 0.738839143 0.086199556 0.200974398 0.747558694 0.014122739 0.063952615 7.42E-06 5.129798417 -0.358054766 IES(ph)DVQEPTEPEDDLDIMLGNK ddPTM_HeLa_CUDC101_4h_R1 5 IESDVQEPTEPEDDLDIMLGNK 22 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 IES(0.782)DVQEPT(0.218)EPEDDLDIMLGNK;IES(1)DVQEPTEPEDDLDIMLGNK;IES(0.985)DVQEPT(0.015)EPEDDLDIMLGNK;IES(1)DVQEPTEPEDDLDIMLGNK;IES(1)DVQEPTEPEDDLDIMLGNK ;;;; 166.66 2.22E-08 30570200 13957.1 10991.37 11683.38 10996.3 15323 21394 21531.2 23243.9 13212.39 13996.93 TRUE FALSE FALSE 12321.0699 11330.00108 12315.01886 11444.77664 14192.65282 20985.94509 22361.6656 25889.89162 12667.76969 13913.67564 0.885536663 0.814306829 0.885101765 0.822555947 1.020050574 1.508296272 1.607171691 1.860751414 0.910454579 1 13.76421597 -5.129642966 1.911980702 0.918597661 1.758135188 0.955655737 0.075805828 0.058395065 0.404865477 0.012903255 0.047132064 7.42E-06 5.129642966 0.839537527 AAGGAPS(ph)PPPPVR ddPTM_HeLa_CUDC101_4h_R1 4 AAGGAPSPPPPVR 13 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR ;;; 145.83 0.00053025 315249000 9524.9 8412.3 8162.2 8149.9 9166.7 8900.7 8768.8 7532.7 8482.7 8752.8 TRUE FALSE FALSE 8408.405661 8671.472992 8603.473221 8482.288149 8490.490804 8730.933977 9107.015553 8390.19212 8133.039516 8700.737956 0.966401437 0.996636496 0.988821094 0.974892956 0.97583571 1.003470513 1.046694614 0.964308104 0.93475284 1 13.08692205 -5.127866646 5.709408537 0.983973121 1.009964569 0.155335495 0.026006273 0.258618146 10.91485073 0.00294161 0.007681348 7.45E-06 5.127866646 0.025991447 SSSSPLVVVS(ph)VKSPNQSLR ddPTM_HeLa_CUDC101_4h_R1 1 SSSSPLVVVSVKSPNQSLR 19 1 Q96B01-3;Q96B01-2;Q96B01 Q96B01-3 RAD51AP1 RAD51-associated protein 1 1 0 SSS(0.001)S(0.001)PLVVVS(0.586)VKS(0.36)PNQS(0.052)LR 60.398 0.018403 19070000 644.13 664.31 516.8 558.6 602.56 416.33 422.51 287.6 562.77 559.3 TRUE FALSE FALSE 568.6260578 684.7766037 544.7397712 581.3821225 558.1103493 408.3891989 438.8063522 320.3392215 539.5723824 555.9732587 1.022757927 1.231671835 0.979794914 1.045701593 1.003843873 0.734548276 0.789258018 0.576177391 0.970500602 1 9.118871683 -5.121710712 1.632219694 1.031141897 0.656051815 0.770637042 0.084373336 0.142052306 0.700425072 0.011992104 0.049383129 7.56E-06 5.121710712 -0.375090082 AVGMPSPVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 AVGMPSPVSPK 11 0 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 AVGMPS(0.028)PVS(0.972)PK;AVGMPS(0.37)PVS(0.63)PK ; 147.96 0.0008465 180918000 12147.5 10657.1 11386.1 11215.5 11401.2 10510.5 9671.8 9086.8 10707.8 10111.6 TRUE FALSE FALSE 10723.58846 10985.43262 12001.66701 11672.91657 10560.15619 10310.02972 10044.84457 10121.20458 10266.41995 10051.45575 1.066869191 1.092919562 1.194022767 1.161316018 1.050609628 1.025725027 0.999342266 1.006939177 1.021386375 1 13.29511684 -5.120394824 3.110371005 1.060526052 1.004599864 0.18433597 0.058648645 0.498662167 9.093793193 0.010391269 0.030634357 7.58E-06 5.120394824 -0.055926187 VLGDHLLLDPTHELPPY(ph)T(ph)PPPMLSPVR ddPTM_HeLa_CUDC101_4h_R1 1 VLGDHLLLDPTHELPPYTPPPMLSPVR 27 0 Q96PN7;Q05GC8;Q96PN7-2;Q96PN7-3;Q96PN7-4;Q96PN7-5 Q96PN7 TRERF1;BCAR2 Transcriptional-regulating factor 1 2 0 VLGDHLLLDPT(0.025)HELPPY(0.762)T(0.787)PPPMLS(0.426)PVR 53.266 0.0014136 0 325.61 210.93 225.89 465.3 601.1 608.67 702.8 809.6 295.3 309.5 TRUE FALSE FALSE 287.4424894 217.4285033 238.1022967 484.2769452 556.7580506 597.0606339 729.9072314 901.7615915 283.127609 307.6590802 0.934288984 0.706718954 0.773916039 1.574070055 1.809659088 1.94065663 2.372454702 2.931041693 0.920264108 1 8.265188763 -5.118910014 0.749936525 0.927289277 3.039896336 0.929142625 0.191344305 0.222333729 0.16764239 0.035961976 0.309624586 7.60E-06 5.118910014 2.112607058 up RSDS(ph)AISVR ddPTM_HeLa_CUDC101_4h_R1 2 RSDSAISVR 9 1 H3BR17;Q6Q0C0-2;Q6Q0C0 H3BR17 TRAF7 E3 ubiquitin-protein ligase TRAF7 1 0 RS(0.057)DS(0.938)AIS(0.005)VR;RS(0.228)DS(0.772)AISVR ; 112.64 0.0047519 21663000 2757.5 2166.8 2476.8 2291.6 2694.2 2006.23 2098.44 2149.95 2701.1 2634.1 TRUE FALSE FALSE 2434.27003 2233.55654 2610.7033 2385.061353 2495.454234 1967.964505 2179.377534 2394.691618 2589.759515 2618.432256 0.929666989 0.853012918 0.99704825 0.910873805 0.95303372 0.751581218 0.832321527 0.91455168 0.989049653 1 11.35448756 -5.115942219 0.084944846 1.1274699 0.620977741 0.366635682 0.060853254 39.59533238 0.75022577 1.407299596 3.297151542 7.66E-06 5.115942219 -0.506492159 SSS(ph)VTSIDK ddPTM_HeLa_CUDC101_4h_R1 1 SSSVTSIDK 9 0 H0Y332;Q5T5C0-3;Q5T5C0-2;Q5T5C0;Q5JRH0 H0Y332 STXBP5 Syntaxin-binding protein 5 1 0 S(0.026)S(0.012)S(0.961)VT(0.001)S(0.001)IDK 118.28 0.0061177 22027000 2671.7 1735.3 2459.3 2038 2648.9 2485.4 2482.3 2356.2 2131.4 2249.6 TRUE FALSE FALSE 2358.527376 1788.762536 2592.257197 2121.118449 2453.495924 2437.995136 2578.043143 2624.420284 2043.54279 2236.219279 1.054694143 0.7999048 1.159214224 0.948528827 1.097162495 1.090230801 1.152857936 1.173597021 0.913838285 1 11.12684595 -5.115562402 1.151670429 1.013506729 1.177612293 0.356613848 0.092963274 0.530650625 1.16738485 0.012630134 0.071952652 7.66E-06 5.115562402 0.164105564 ADS(ph)LLAVVK ddPTM_HeLa_CUDC101_4h_R1 2 ADSLLAVVK 9 0 Q15424-2;Q15424;Q15424-4;Q15424-3;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 ADS(1)LLAVVK;ADS(1)LLAVVK ; 96.229 0.021277 43176000 6428.9 5028.4 4845.2 4944.4 5695.9 6612.5 6209.2 6114.5 5867 6466.1 TRUE FALSE FALSE 5675.314088 5183.319044 5107.146168 5146.054004 5275.724805 6486.37758 6448.690924 6810.549964 5625.159777 6427.63935 0.882954655 0.806410995 0.794560163 0.80061337 0.820787309 1.009138383 1.003275164 1.059572511 0.875151742 1 12.65007327 -5.113762272 7.165945809 0.903179127 1.025259155 0.464391974 0.071220141 0.275032086 15.43762575 0.013396691 0.034506109 7.70E-06 5.113762272 0.122080028 S(ph)VDEVNYWDKQDHPISR ddPTM_HeLa_CUDC101_4h_R1 2 SVDEVNYWDKQDHPISR 17 1 F5H5P2;P12694;P12694-2 F5H5P2 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" 1 0 S(0.999)VDEVNY(0.001)WDKQDHPISR;S(1)VDEVNYWDKQDHPISR ; 95.988 0.0020804 99906000 4633.7 3189.9 3161.68 3407.1 3346 4588.5 4394 4630 4078.5 3027.58 TRUE FALSE FALSE 4090.54471 3288.177038 3332.609984 3546.056265 3099.172246 4500.982007 4563.478052 5157.060485 3910.382504 3009.57182 1.3591783 1.092573042 1.107336918 1.178259393 1.029771819 1.495555606 1.516321366 1.713552889 1.299315231 1 11.55534253 -5.111861436 4.031211761 1.155467463 1.595985759 0.743733205 0.114682989 0.110339771 3.083471302 0.020561066 0.056765962 7.73E-06 5.111861436 0.440518296 SNS(ph)LSEQLAINTSPDAVK ddPTM_HeLa_CUDC101_4h_R1 1 SNSLSEQLAINTSPDAVK 18 0 Q5T1M5;Q5T1M5-2;Q5T1M5-3 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 S(0.144)NS(0.428)LS(0.428)EQLAINTSPDAVK 103.73 0.0012438 12219000 4715.6 3987.4 3993.3 3777.5 4986.7 4983.8 4919 4761.8 4662.1 4787.9 TRUE FALSE FALSE 4162.844516 4110.247068 4209.189877 3931.562778 4618.841076 4888.742319 5108.727478 5303.864064 4469.926265 4759.421358 0.874653493 0.863602266 0.884391097 0.826058985 0.970462737 1.027171572 1.07339256 1.114392626 0.939174309 1 12.21657047 -5.111752071 1.974224591 0.921052243 1.096245292 0.710405957 0.04917791 0.205530434 1.524549587 0.009684472 0.035325544 7.73E-06 5.111752071 0.175193049 SSSCGSGGGGIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 SSSCGSGGGGISPK 14 0 F5H375;F5GWH4;Q96EP1-2;Q96EP1-4;Q96EP1 F5H375 CHFR E3 ubiquitin-protein ligase CHFR 1 0 SSSCGSGGGGIS(1)PK;SSSCGSGGGGIS(1)PK;SSSCGS(0.001)GGGGIS(0.999)PK ;; 137.73 0.00059638 25383000 4140.7 2957.52 4331.33 4642.1 3984.28 3141.76 2800.69 2165.3 4298.68 4116.96 TRUE FALSE FALSE 3655.333423 3048.637686 4565.494801 4831.424903 3690.367602 3081.836163 2908.713551 2411.789 4121.486591 4092.472139 0.893184681 0.744937921 1.1155836 1.180563908 0.901745321 0.753050004 0.710747307 0.589323254 1.007089713 1 11.99875688 -5.111729163 2.24322181 0.961476878 0.64950397 0.582719649 0.116204737 0.192440623 1.8611949 0.017937379 0.060879186 7.73E-06 5.111729163 -0.311972907 RNALFPEVFS(ph)PTPDENSDQNSR ddPTM_HeLa_CUDC101_4h_R1 1 RNALFPEVFSPTPDENSDQNSR 22 1 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 RNALFPEVFS(0.697)PT(0.028)PDENS(0.271)DQNS(0.004)R 50.47 0.025055 9290900 956.72 855.5 500.23 719.83 856.16 854.45 839.42 752.2 820.88 817.31 TRUE FALSE FALSE 844.5747319 881.856941 527.2739469 749.1877788 793.0027825 838.1527899 871.7967106 837.8274075 787.042979 812.4486038 1.039542351 1.08543105 0.648993603 0.922135598 0.976065167 1.031637923 1.073048445 1.031237427 0.968729561 1 9.66613274 -5.109970068 4.21792078 0.985989598 1.052262915 0.071099877 0.11485467 0.603767375 18.06204392 0.017213742 0.047101379 7.76E-06 5.109970068 0.066273317 SRLT(ph)PVS(ph)PESSSTEEK ddPTM_HeLa_CUDC101_4h_R1 2 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 S(0.024)RLT(0.976)PVS(0.725)PES(0.223)S(0.042)S(0.008)T(0.001)EEK;S(0.188)RLT(0.865)PVS(0.928)PES(0.01)S(0.003)S(0.004)T(0.001)EEK ; 170.79 6.07E-06 278460000 18483.8 15754 15496.1 16173.3 17053.5 13770.2 12103.5 10658.3 15932.8 15837.3 TRUE FALSE FALSE 16317.15698 16239.36207 16333.86604 16832.91708 15795.49728 13507.55638 12570.33605 11871.59779 15276.04324 15743.09904 1.036464101 1.031522576 1.037525458 1.069225128 1.003328331 0.857998565 0.798466428 0.754082647 0.970332665 1 13.94243194 -5.108748761 2.184134081 1.024585328 0.773127547 0.938660135 0.026119082 0.048469733 0.443817973 0.003563056 0.012298892 7.78E-06 5.108748761 -0.251457781 EPEPAAGPQAEESATVSAPAPMS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 2 EPEPAAGPQAEESATVSAPAPMSPTR 26 0 Q9BWG6-2;Q9BWG6 Q9BWG6-2 SCNM1 Sodium channel modifier 1 1 0 EPEPAAGPQAEESAT(0.001)VS(0.087)APAPMS(0.715)PT(0.197)R;EPEPAAGPQAEESAT(0.049)VS(0.135)APAPMS(0.619)PT(0.196)R ; 103.53 6.82E-06 10343900 5376.8 4505.7 4534 3849.4 4111 4108.9 3510.2 2803.1 4308.5 4843 TRUE FALSE FALSE 4746.539655 4644.515276 4779.121755 4006.395171 3807.73972 4030.529578 3645.58959 3122.193573 4130.901806 4814.193621 0.985946979 0.964754566 0.992714903 0.832204827 0.790940295 0.837218005 0.757258614 0.648539261 0.858067234 1 12.23307845 -5.107758502 0.475916377 1.002841641 0.590408797 0.716557442 0.059506188 0.511425537 0.128144646 0.009489229 0.102813323 7.80E-06 5.107758502 -0.412432844 RRDS(ph)DGVDGFEAEGKK ddPTM_HeLa_CUDC101_4h_R1 2 RRDSDGVDGFEAEGKK 16 3 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 RRDS(1)DGVDGFEAEGKK;RRDS(1)DGVDGFEAEGKK ; 79.81 0.010556 279380000 8340.9 7685.4 8430.6 8307.8 9297.9 9107.1 9339.1 8806.2 8350.2 8575.7 TRUE FALSE FALSE 7363.192346 7922.178065 8886.383737 8646.627993 8612.012441 8933.397241 9699.312215 9808.662212 8006.001222 8524.691355 0.863748849 0.929321395 1.042428795 1.014303936 1.010243313 1.047943775 1.137790427 1.15061787 0.93915438 1 13.05743189 -5.106854678 0.647588986 0.937709683 1.193480512 0.736460695 0.043410068 0.726768924 0.377378225 0.011462633 0.11195084 7.82E-06 5.106854678 0.25577083 KDIEVLS(ph)EDTDYEEDEVTK ddPTM_HeLa_CUDC101_4h_R1 2 KDIEVLSEDTDYEEDEVTK 19 1 H7C5R6;Q4LE39-2;Q4LE39;H0Y7Y8;Q4LE39-4;Q4LE39-3 H7C5R6 ARID4B AT-rich interactive domain-containing protein 4B 1 0 KDIEVLS(0.998)EDT(0.002)DYEEDEVTK;KDIEVLS(0.68)EDT(0.279)DY(0.041)EEDEVTK ; 86.946 0.0016246 8408100 5245 4950.7 4833.6 4615.6 5236.7 4331.2 3561.6 3545.8 5877.4 5130.8 TRUE FALSE FALSE 4630.189051 5103.225199 5094.919037 4803.844118 4850.399074 4248.589576 3698.972105 3949.439539 5635.131084 5100.281773 0.907830049 1.00057711 0.998948541 0.941878181 0.951006099 0.833010756 0.725248578 0.774357127 1.10486662 1 12.31636124 -5.105446711 2.479189105 0.96157306 0.749287029 0.753944949 0.05466663 0.084484088 1.001062055 0.005765171 0.01875267 7.84E-06 5.105446711 -0.212286032 RAEDGS(ph)VIDYELIDQDAR ddPTM_HeLa_CUDC101_4h_R1 2 RAEDGSVIDYELIDQDAR 18 1 P07355;P07355-2;H0YN42;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5;H0YNA0 P07355 ANXA2 Annexin A2;Annexin 1 0 RAEDGS(1)VIDYELIDQDAR;RAEDGS(1)VIDYELIDQDAR ; 172.06 1.33E-07 25357000 4448.3 3705.5 3470.1 3749.7 4278.9 3604.4 3336.9 3014.9 3349.7 3829.1 TRUE FALSE FALSE 3926.877017 3819.662063 3657.704102 3902.628974 3963.254072 3535.652075 3465.605351 3358.104029 3211.623948 3806.324343 1.031671677 1.003504094 0.960954394 1.025301215 1.04122868 0.928888806 0.910486085 0.882243269 0.843759927 1 11.89418279 -5.105152097 3.955118394 1.012458352 0.900173874 0.214951601 0.057688267 0.071953568 1.974170122 0.003403304 0.009465388 7.85E-06 5.105152097 -0.112284479 SSGDPEQIKEDS(ph)LS(ph)EESADAR ddPTM_HeLa_CUDC101_4h_R1 2 SSGDPEQIKEDSLSEESADAR 21 1 Q9BVS4-2;Q9BVS4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 2 0 SSGDPEQIKEDS(0.971)LS(0.971)EES(0.057)ADAR;S(0.001)S(0.001)GDPEQIKEDS(0.989)LS(0.988)EES(0.022)ADAR ; 57.171 0.025494 27619000 7778.6 7807.8 6936.4 7292.4 7825.2 6887.2 5882.4 5587.1 7748 8109.6 TRUE FALSE FALSE 6866.8043 8048.349063 7311.402765 7589.815592 7247.950586 6755.838135 6109.286138 6223.11288 7428.624161 8061.363739 0.851816705 0.998385549 0.906968474 0.941505164 0.899097327 0.83805152 0.757847721 0.771967757 0.921509611 1 12.9768082 -5.10469594 1.719548325 0.932978998 0.759472885 0.734069845 0.041060794 0.20726715 1.143822621 0.008467188 0.034183521 7.86E-06 5.10469594 -0.173506113 LGRGS(ph)VSDCSDGTSELEEPLGEDPR ddPTM_HeLa_CUDC101_4h_R1 2 LGRGSVSDCSDGTSELEEPLGEDPR 25 1 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 0 LGRGS(0.693)VS(0.273)DCS(0.009)DGT(0.018)S(0.007)ELEEPLGEDPR;LGRGS(0.713)VS(0.233)DCS(0.016)DGT(0.031)S(0.008)ELEEPLGEDPR ; 80.751 2.87E-05 18755400 1086.91 1408.54 1234.04 1416.19 1845.88 1924.27 1922.5 2076.41 1603.34 734.66 TRUE FALSE FALSE 959.5040574 1451.935448 1300.755935 1473.948349 1709.71311 1887.567756 1996.651469 2312.780121 1537.249647 730.2902096 1.313866795 1.988162279 1.781149354 2.018304956 2.341142038 2.584681721 2.734052083 3.166932941 2.104984602 1 9.51232608 -5.104661803 0.277393251 0.900251484 4.155935023 0.633282577 0.372424346 0.644239619 0.055641337 0.084088011 0.689895024 7.86E-06 5.104661803 3.255683539 NAEEESES(ph)EAEEGD ddPTM_HeLa_CUDC101_4h_R1 5 NAEEESESEAEEGD 14 0 H0Y503;Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3 H0Y503 BZW1 Basic leucine zipper and W2 domain-containing protein 1 1 0 NAEEES(0.024)ES(0.976)EAEEGD;NAEEES(0.016)ES(0.984)EAEEGD;NAEEES(0.306)ES(0.694)EAEEGD;NAEEESES(1)EAEEGD;NAEEES(0.479)ES(0.521)EAEEGD ;;;; 222.74 9.89E-33 236005300 23707.8 22346 19478 20173.7 22154 17856.5 15843.3 14107.8 23669.9 23019.7 TRUE FALSE FALSE 20928.80762 23034.45377 20531.0396 20996.47068 20519.74356 17515.91701 16454.38139 15713.77493 22694.2167 22882.7778 0.914609573 1.00662839 0.897226717 0.917566515 0.896733069 0.765462881 0.719072725 0.686707491 0.991759694 1 14.48197457 -5.104322912 0.827353556 0.961709932 0.64483072 0.911586243 0.032908306 0.231119752 0.221459945 0.006376507 0.051404711 7.86E-06 5.104322912 -0.316879212 WISENQDSADVDPQEHS(ph)FTR ddPTM_HeLa_CUDC101_4h_R1 1 WISENQDSADVDPQEHSFTR 20 0 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 WISENQDSADVDPQEHS(0.75)FT(0.25)R 83.435 0.0019213 6422900 1823.5 1718.2 1614 1341.8 1622 1833.3 1946.4 1538.3 1534.1 1584 TRUE FALSE FALSE 1609.752094 1771.135705 1701.257722 1396.524404 1502.348291 1798.332857 2021.4733 1713.413854 1470.863749 1574.578298 1.02233855 1.124831778 1.080452922 0.886919632 0.954127396 1.142104435 1.283818851 1.088173168 0.934131857 1 10.62074978 -5.100377981 5.18198377 1.012517568 1.192123963 0.49618181 0.078908618 0.129091694 5.272806465 0.010444695 0.027680996 7.94E-06 5.100377981 0.179606395 (ac)SETAPLAPTIPAPAEKT(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 3 SETAPLAPTIPAPAEKTPVK 20 1 P16402 P16402 HIST1H1D Histone H1.3 1 0 SETAPLAPTIPAPAEKT(1)PVK;SETAPLAPT(0.004)IPAPAEKT(0.996)PVK;SETAPLAPT(0.001)IPAPAEKT(0.999)PVK ;; 90.193 8.38E-05 59228400 12543.2 11581.5 14852.4 13807.7 10710.1 9695.4 7146.7 5534.28 9937.5 13354.1 TRUE FALSE FALSE 11072.90511 11938.31229 15655.36567 14370.83769 9920.037261 9510.476399 7422.350613 6164.280065 9527.872044 13274.66922 0.83413793 0.899330303 1.179341301 1.082575954 0.747290731 0.71643792 0.559136389 0.464364118 0.717748359 1 13.69638829 -5.099509303 1.510096238 0.946640274 0.490719793 0.638274156 0.128707311 0.198676613 0.821485936 0.018463308 0.083222404 7.95E-06 5.099509303 -0.455920481 RS(ph)SPPPPPSGS(ph)SSRTPAR ddPTM_HeLa_CUDC101_4h_R1 1 RSSPPPPPSGSSSRTPAR 18 2 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 2 0 RS(0.904)S(0.096)PPPPPS(0.138)GS(0.273)S(0.231)S(0.196)RT(0.163)PAR 66.401 0.012662 1200000 313.37 376.31 275.11 257.43 269.65 343.83 326.46 333.9 363.15 277.38 TRUE FALSE FALSE 276.6372436 387.9036651 289.9832788 267.9291081 249.7584567 337.2720156 339.0516716 371.9098263 348.1808033 275.7301314 1.003289855 1.406823632 1.051692382 0.971707759 0.905807629 1.223196079 1.229650419 1.348818225 1.262759356 1 8.107113122 -5.09833105 5.373966425 1.029003529 1.275504123 0.176671818 0.150220031 0.172168171 7.466098822 0.019143988 0.05052319 7.97E-06 5.09833105 0.246500594 S(ph)RT(ph)GSESSQTGTSTTSSR ddPTM_HeLa_CUDC101_4h_R1 2 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 S(0.881)RT(0.704)GS(0.409)ES(0.005)SQTGTSTTSSR;S(0.956)RT(0.95)GS(0.08)ES(0.011)S(0.003)QTGTSTTSSR ; 104.76 0.0013523 60833000 3189.67 3006.9 2527.94 2852.995 3446.41 3660.73 3863.12 3580.32 3156 3318.6 TRUE FALSE FALSE 2815.781718 3099.539025 2664.608083 2969.352468 3192.175201 3590.907674 4012.121832 3987.889157 3025.908344 3298.86082 0.853561842 0.939578598 0.80773583 0.900114503 0.967659861 1.088529608 1.216214339 1.208868568 0.917258566 1 11.6877522 -5.094970914 1.930058897 0.918074692 1.218890882 0.859799689 0.049833707 0.123915622 0.876352555 0.009763819 0.036775387 8.04E-06 5.094970914 0.30081619 VLSPLRS(ph)PPLIGSESAYESFLSADDK ddPTM_HeLa_CUDC101_4h_R1 2 VLSPLRSPPLIGSESAYESFLSADDK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VLS(0.001)PLRS(0.999)PPLIGSESAYESFLSADDK;VLS(0.043)PLRS(0.957)PPLIGSESAYESFLSADDK ; 138.24 3.62E-11 1283180000 4338.5 4402.1 3904.9 3501.3 4307.4 4816.6 4508.4 4512.8 4507.7 4989.3 TRUE FALSE FALSE 3829.947607 4537.723483 4116.010706 3644.098148 3989.651684 4724.73138 4682.290498 5026.518911 4321.890698 4959.623422 0.772225486 0.91493307 0.829903877 0.734752992 0.804426333 0.952639138 0.944081859 1.013488018 0.871415092 1 12.27601487 -5.09305463 6.497632832 0.869879516 0.971644396 0.340702874 0.07427901 0.332574336 19.40284485 0.014463012 0.037516881 8.07E-06 5.09305463 0.10176488 LSSGDPSTSPS(ph)LSQTTPSKDTDDQSRK ddPTM_HeLa_CUDC101_4h_R1 1 LSSGDPSTSPSLSQTTPSKDTDDQSRK 27 2 Q99504-2;Q99504-4;Q99504-5;Q99504-3;Q99504 Q99504-2 EYA3 Eyes absent homolog 3 1 0 LSSGDPS(0.061)T(0.061)S(0.055)PS(0.209)LS(0.209)QT(0.189)T(0.189)PS(0.014)KDT(0.014)DDQS(0.001)RK 50.498 0.022848 6439200 787.81 681.42 748.38 553.57 828.35 607.77 543.61 521.98 666.03 678.52 TRUE FALSE FALSE 695.464106 702.4137425 788.8396865 576.1469773 767.2442708 596.1777999 564.5772198 581.4000933 638.5759615 674.4841329 1.031105214 1.041408846 1.16954521 0.854203901 1.137527532 0.88390189 0.83705041 0.861992247 0.946762022 1 9.397640694 -5.090871537 7.112461703 1.023609739 0.852081022 0.451466912 0.083765418 0.148204732 9.999056455 0.010140284 0.026163862 8.11E-06 5.090871537 -0.171528716 QEVGPPLPPLLAPLIAT(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 QEVGPPLPPLLAPLIATPPR 20 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 QEVGPPLPPLLAPLIAT(1)PPR 87.447 0.011378 48277000 336.21 347.8 218.83 328.73 243.4 386.04 399.77 359.11 368.51 276.99 TRUE FALSE FALSE 296.7999735 358.5153058 230.6606117 342.1370303 225.4448669 378.6769302 415.1892628 399.9896308 353.3198618 275.3424512 1.077930309 1.302070582 0.837722664 1.24258729 0.818779908 1.375294396 1.507901383 1.452698736 1.283201556 1 8.105083246 -5.090730878 5.916754283 1.046343652 1.47189559 0.516349335 0.161455367 0.094976862 4.966872376 0.01806846 0.047256322 8.11E-06 5.090730878 0.425551938 AAS(ph)KDTISNNR ddPTM_HeLa_CUDC101_4h_R1 1 AASKDTISNNR 11 1 Q14669;Q14669-2;Q14669-3;Q14669-4 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 AAS(0.995)KDT(0.005)ISNNR 139.19 0.0072809 3614700 1710.9 1117 1950.4 1752.3 1645.5 1905.9 1829.2 1643 1967.6 2051.8 TRUE FALSE FALSE 1510.350896 1151.413446 2055.844524 1823.766368 1524.114743 1869.548133 1899.752857 1830.032479 1886.494695 2039.595802 0.740514809 0.56453021 1.007966638 0.894180291 0.74726313 0.91662678 0.931435951 0.897252523 0.924935565 1 10.99406756 -5.089699616 24.98871264 0.853734301 0.916809608 0.061633032 0.126600544 198.558497 55307.18237 0.020651465 0.052651139 8.13E-06 5.089699616 0.063075308 EGPLGWSSDGSLGSVLLDSPS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 2 EGPLGWSSDGSLGSVLLDSPSSPR 24 0 C9JRJ5;Q9UGP4 C9JRJ5 LIMD1 LIM domain-containing protein 1 1 0 EGPLGWSSDGSLGSVLLDS(0.065)PS(0.869)S(0.066)PR;EGPLGWSSDGSLGSVLLDS(0.452)PS(0.512)S(0.036)PR ; 146.6 8.77E-09 8914500 2390.1 2077.96 2214 1788.83 2292 2376.1 2330.9 2154.5 2409.5 2280.7 TRUE FALSE FALSE 2109.936101 2141.979485 2333.695537 1861.786219 2122.923726 2330.779851 2420.803594 2399.759571 2310.17939 2267.134295 0.930662161 0.944796031 1.029359197 0.821206853 0.936390813 1.02807313 1.067781295 1.058499083 1.018986566 1 11.14665414 -5.089304232 4.012430516 0.956755811 1.060781208 0.398901432 0.055475094 0.175470601 5.103727599 0.00781179 0.021826565 8.14E-06 5.089304232 0.104025398 VDDS(ph)PSTSGGSSDGDQR ddPTM_HeLa_CUDC101_4h_R1 1 VDDSPSTSGGSSDGDQR 17 0 F8WF15;F8W8F0;C9J180;Q96LR5 F8WF15 UBE2E2 Ubiquitin-conjugating enzyme E2 E2 1 0 VDDS(0.903)PS(0.032)T(0.058)S(0.002)GGS(0.002)S(0.002)DGDQR 118.71 0.00031737 12936000 2220.1 1746.8 1875.9 1746.1 1435.1 1749.1 1155.4 1251.2 1952 2467.3 TRUE FALSE FALSE 1959.863243 1800.616838 1977.316828 1817.313505 1329.235532 1715.738832 1199.964165 1393.63155 1871.537734 2452.62439 0.799088214 0.734159232 0.806204503 0.740966906 0.541964574 0.699552218 0.48925721 0.568220538 0.763075562 1 11.26011059 -5.089094615 0.112640851 1.232684803 8.16E-14 0.557183551 0.09472831 7.124658134 0.181974887 0.534933269 1.628590069 8.15E-06 5.089094615 -1.232684803 LGS(ph)FGSITR ddPTM_HeLa_CUDC101_4h_R1 4 LGSFGSITR 9 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 LGS(0.999)FGS(0.001)ITR;LGS(1)FGSITR;LGS(0.998)FGS(0.002)ITR;LGS(0.955)FGS(0.045)ITR ;;; 147.3 0.0010009 2595290000 8696 7593.7 6727.1 6923.1 9029.8 9730.9 10061.1 9727 7997.7 8320.7 TRUE FALSE FALSE 7676.668062 7827.652896 7090.787374 7205.453942 8363.689644 9545.299295 10449.16 10834.28236 7668.031421 8271.208106 0.928119322 0.946373588 0.857285572 0.871148912 1.01118114 1.15403931 1.263317264 1.309879068 0.927075141 1 13.01388235 -5.089036624 1.91637497 0.948499615 1.295596142 0.915683239 0.044260761 0.088757001 0.618296003 0.007998243 0.030461409 8.15E-06 5.089036624 0.347096526 RIDFTPVSPAPS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 RIDFTPVSPAPSPTR 15 1 G1UD79;Q7Z309-3;Q7Z309-4;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 RIDFTPVSPAPS(0.862)PT(0.138)R 118.23 0.0020201 24610000 1158.5 1027 1282.6 1157.3 1243.5 1046.7 777.96 940.6 1010.7 1262.3 TRUE FALSE FALSE 1022.702386 1058.640653 1351.941236 1204.499696 1151.769482 1026.735941 807.9661778 1047.674102 969.0385182 1254.791783 0.815037522 0.843678343 1.077422767 0.959919974 0.917896895 0.818252044 0.643904581 0.834938606 0.772270373 1 10.29323227 -5.08826575 3.591928139 0.921923303 0.737143743 0.345537613 0.095229724 0.184056647 4.433462883 0.013797925 0.039742607 8.16E-06 5.08826575 -0.18477956 DSSKGEDSAEET(ph)EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK ddPTM_HeLa_CUDC101_4h_R1 1 DSSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK 45 2 Q12906-7;Q12906-4;Q12906-6 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 DS(0.117)S(0.117)KGEDS(0.34)AEET(0.423)EAKPAVVAPAPVVEAVS(0.002)T(0.001)PSAAFPSDATAENVK 59.399 3.41E-05 43683000 6926.7 6454 5268.3 6505.2 6982 7381.2 6815.1 6957.9 6809.6 6307.7 TRUE FALSE FALSE 6114.762726 6652.84009 5553.120234 6770.510174 6466.95177 7240.415908 7077.96069 7749.959211 6528.905406 6270.18152 0.975213031 1.061028308 0.885639469 1.079794923 1.031381907 1.154737847 1.128828674 1.236002369 1.041262583 1 12.61429149 -5.087652685 0.891241965 0.987885788 1.229760521 0.665963199 0.054044329 0.325478362 0.373033963 0.007532446 0.057960005 8.17E-06 5.087652685 0.241874733 VEPGLGADNS(ph)VVR ddPTM_HeLa_CUDC101_4h_R1 2 VEPGLGADNSVVR 13 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 1 0 VEPGLGADNS(1)VVR;VEPGLGADNS(1)VVR ; 130.95 0.0010666 12740500 2389.73 2383.3 2449.7 2096.86 2898.8 2029.5 1786 1639.64 2868.2 2654.6 TRUE FALSE FALSE 2109.609472 2456.726648 2582.138192 2182.379014 2684.961299 1990.790669 1854.886618 1826.28999 2749.971582 2638.810321 0.79945476 0.930997817 0.978523606 0.827031408 1.017489312 0.754427347 0.702925331 0.692088391 1.042125521 1 11.36567194 -5.085926865 5.589042555 0.91114544 0.70413911 0.625578992 0.078199173 0.126015073 6.310377527 0.011904109 0.031361963 8.20E-06 5.085926865 -0.20700633 SHWDDSTS(ph)DSELEK ddPTM_HeLa_CUDC101_4h_R1 2 SHWDDSTSDSELEK 14 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 SHWDDST(0.025)S(0.975)DSELEK;SHWDDST(0.021)S(0.979)DSELEK ; 183.31 4.56E-11 72528000 11836.7 10947.5 13859.6 13046.9 14107.7 12130.5 11976.7 10881.3 13375.8 13935.5 TRUE FALSE FALSE 10449.21997 11284.7795 14608.8919 13579.00898 13067.00308 11899.13092 12438.64533 12119.98321 12824.44386 13852.61103 0.754314111 0.814631948 1.054594825 0.980249063 0.943288096 0.85898109 0.897927857 0.874924098 0.925778096 1 13.75787031 -5.085812322 0.004888684 1.768879797 2.31E-07 0 0.085782366 108438.595 112.6265317 19856.30975 20903.74101 8.21E-06 5.085812322 -1.768879567 GVSS(ph)PVETR ddPTM_HeLa_CUDC101_4h_R1 2 GVSSPVETR 9 0 A8MVZ6;Q96G01-4;Q96G01-3;Q96G01 A8MVZ6 BICD1 Protein bicaudal D homolog 1 1 0 GVS(0.028)S(0.972)PVETR;GVS(0.252)S(0.748)PVETR ; 150.81 0.00063214 40322000 5006.5 5091.8 4712.1 4666.3 5282.3 4388.7 3796.5 3549.9 5422.1 5302 TRUE FALSE FALSE 4419.645659 5248.672323 4966.850379 4856.611883 4892.635253 4304.99286 3942.932277 3954.006267 5198.598743 5270.463468 0.838568692 0.995865421 0.942393474 0.921477193 0.928312146 0.816814856 0.7481187 0.750219841 0.986364629 1 12.36371412 -5.084976489 2.400962308 0.929759623 0.74782128 0.750824608 0.046126612 0.157494814 1.754041307 0.008961569 0.03014491 8.22E-06 5.084976489 -0.181938343 VTPDIEES(ph)LLEPENEK ddPTM_HeLa_CUDC101_4h_R1 2 VTPDIEESLLEPENEK 16 0 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 1 0 VTPDIEES(1)LLEPENEK;VTPDIEES(1)LLEPENEK ; 176.28 3.16E-07 12476500 4857.1 4196.9 4967.3 4126.3 6485.6 7527 9334.3 8769.4 3893.1 3909.7 TRUE FALSE FALSE 4287.758101 4326.201514 5235.847263 4294.588349 6007.170209 7383.435016 9694.327078 9767.673049 3732.62477 3886.444931 1.103259708 1.113151374 1.347207373 1.105017163 1.545672283 1.899791493 2.494394556 2.513266809 0.960421371 1 11.92423536 -5.083662485 0.969628035 1.063523013 2.728857059 0.963237972 0.108534648 0.09050271 0.128094422 0.016353699 0.116323521 8.25E-06 5.083662485 1.665334046 up AVEESS(ph)DEERQR ddPTM_HeLa_CUDC101_4h_R1 3 AVEESSDEERQR 12 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 AVEES(0.038)S(0.962)DEERQR;AVEES(0.089)S(0.911)DEERQR;AVEES(0.145)S(0.855)DEERQR ;; 87.18 0.014142 42107000 3890.27 3801.8 4307.31 3911.71 4752.48 3494.54 3034.45 2949.64 5412.1 4397.14 TRUE FALSE FALSE 3434.258448 3918.928952 4540.176208 4071.246442 4401.899019 3427.887472 3151.489753 3285.415095 5189.010947 4370.985616 0.785694292 0.896577865 1.038707652 0.931425266 1.00707241 0.784236731 0.721002087 0.751641708 1.187148942 1 12.09374292 -5.081534183 5.791314634 0.915794988 0.739704562 0.399384089 0.110583838 0.166847407 9.184683781 0.01339296 0.035182234 8.29E-06 5.081534183 -0.176090426 SATTT(ph)GSPGTEK ddPTM_HeLa_CUDC101_4h_R1 3 SATTTGSPGTEK 12 0 A0A1B0GUI1;Q6GYQ0-3;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 S(0.005)AT(0.001)T(0.124)T(0.781)GS(0.089)PGTEK;S(0.002)AT(0.001)T(0.016)T(0.965)GS(0.015)PGTEK;SAT(0.002)T(0.037)T(0.607)GS(0.353)PGTEK ;; 222.25 1.26E-31 55026400 14683.5 4392.1 13216.9 14042.9 8034.9 8000 8395 3045.87 12638.3 15538.6 TRUE FALSE FALSE 12962.32239 4527.415395 13931.44559 14615.63016 7442.181435 7847.413329 8718.797962 3392.599529 12117.34392 15446.17572 0.83919299 0.293109147 0.901934942 0.946229697 0.481813853 0.508048948 0.564463212 0.219640097 0.784488287 1 13.91496207 -5.080905053 0.203071852 1.062683851 1.84E-15 0.368258464 0.209656247 6.246911368 0.330695195 0.294620344 1.74836569 8.30E-06 5.080905053 -1.062683851 VDNLT(ph)Y(ph)RT(ph)SPDSLRR ddPTM_HeLa_CUDC101_4h_R1 1 VDNLTYRTSPDSLRR 15 2 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 3 0 VDNLT(0.991)Y(0.988)RT(0.991)S(0.028)PDS(0.002)LRR 58.592 0.03765 4021600 1340.3 1380.5 952.59 1065.6 1224.8 1384.9 1464.3 1293.5 1457.4 1138.1 TRUE FALSE FALSE 1183.192066 1423.031569 1004.089897 1109.059774 1134.448944 1358.48534 1520.778542 1440.746811 1397.325355 1131.330531 1.045841188 1.257838916 0.887530098 0.980314545 1.002756412 1.200785538 1.34423893 1.273497685 1.235116809 1 10.14380477 -5.080840963 3.316800884 1.025813087 1.306104296 0.436397903 0.111287174 0.11523507 2.423920304 0.012553256 0.037252398 8.30E-06 5.080840963 0.280291209 IS(ph)MPDLDLHLK ddPTM_HeLa_CUDC101_4h_R1 1 ISMPDLDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)MPDLDLHLK 112.42 0.0040388 3580100 4718.4 4931.3 3674.8 4402.3 5408.7 5793 5879.2 5969.9 4679.6 4462.8 TRUE FALSE FALSE 4165.316305 5083.227508 3873.470804 4581.844822 5009.710977 5682.508177 6105.962713 6649.489285 4486.704907 4436.255067 0.938926243 1.145837521 0.873139787 1.032818166 1.129265766 1.280924584 1.376377738 1.498896971 1.011372169 1 12.1151266 -5.078961193 1.018360212 0.976654517 1.514909339 0.873116817 0.067838836 0.16320092 0.260694844 0.010226149 0.069656473 8.34E-06 5.078961193 0.538254822 YS(ph)GSYNDYLR ddPTM_HeLa_CUDC101_4h_R1 2 YSGSYNDYLR 10 0 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 Y(0.095)S(0.896)GS(0.008)YNDYLR;Y(0.003)S(0.887)GS(0.099)YNDY(0.01)LR ; 94.547 0.022171 37786000 2420.3 1679.65 1462.44 1566.77 1892.97 2273.3 2268.1 2258.9 1786.98 1625.81 TRUE FALSE FALSE 2136.596103 1731.398026 1541.50393 1630.669653 1753.329374 2229.94059 2355.581377 2516.044045 1713.319928 1616.13961 1.32203684 1.071317116 0.953818544 1.008990586 1.084887323 1.379794528 1.457535823 1.556823451 1.060131141 1 10.65833611 -5.078192159 2.818150303 1.11892658 1.5040376 0.746120197 0.104025179 0.15458686 2.377460426 0.020852818 0.065765511 8.35E-06 5.078192159 0.385111021 RLSS(ph)ASTGKPPLSVEDDFEK ddPTM_HeLa_CUDC101_4h_R1 1 RLSSASTGKPPLSVEDDFEK 20 2 O75152;A0A1B0GTU1;A0A494C0C4 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 RLS(0.139)S(0.374)AS(0.244)T(0.244)GKPPLSVEDDFEK 71.842 0.0065974 47589000 873.17 949.59 909.14 1125.8 1254.7 1102 1416.7 1305.9 800.57 909.54 TRUE FALSE FALSE 770.8183362 978.8457424 958.2908584 1171.71499 1162.143281 1080.981186 1471.342594 1454.558377 767.5701658 904.1300156 0.852552534 1.082638255 1.059903821 1.295958512 1.285371861 1.195603693 1.627357314 1.608793373 0.848959942 1 9.82038644 -5.074301566 0.502325083 0.927086535 1.82416671 0.84660766 0.10224858 0.627824165 0.174520661 0.025412949 0.286613381 8.43E-06 5.074301566 0.897080175 TLTDEVNSPDS(ph)DRR ddPTM_HeLa_CUDC101_4h_R1 1 TLTDEVNSPDSDRR 14 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 TLTDEVNS(0.004)PDS(0.996)DRR 145.49 0.00074283 127210000 2968 3035.4 3133.9 2898.2 3035.3 2770 2584.7 2221.9 3168.5 3212.3 TRUE FALSE FALSE 2620.095539 3128.917076 3303.328114 3016.401123 2811.391966 2717.166865 2684.392745 2474.832115 3037.893089 3193.193097 0.820525242 0.979870926 1.03449056 0.944634738 0.880432808 0.850924696 0.840660951 0.775033654 0.951365294 1 11.64078408 -5.072685681 1.396154464 0.929568293 0.796132374 0.498737862 0.057837682 0.496182634 1.703839588 0.012029236 0.060243398 8.46E-06 5.072685681 -0.133435919 SQTT(ph)SLENGVFPR ddPTM_HeLa_CUDC101_4h_R1 1 SQTTSLENGVFPR 13 0 A0A087WX11;J3KNG8;Q8TF40-3;Q8TF40;Q8TF40-2 A0A087WX11 FNIP1 Folliculin-interacting protein 1 1 0 SQT(0.005)T(0.498)S(0.498)LENGVFPR 165.78 9.17E-05 9296300 1957.9 1392.7 1473.7 1673.6 1445.4 1325.5 1256.8 1073.5 1525 1774.1 TRUE FALSE FALSE 1728.39793 1435.607436 1553.37268 1741.856642 1338.775722 1300.218296 1305.275197 1195.702901 1462.138855 1763.547574 0.980068786 0.814045199 0.880822668 0.987700399 0.759137854 0.737274296 0.740141755 0.678010006 0.829089544 1 10.78426478 -5.071443728 0.341586817 1.008989237 0.536019553 0.470389151 0.080642924 1.344590803 0.165803758 0.024149926 0.244174494 8.48E-06 5.071443728 -0.472969684 SDTS(ph)SPEVR ddPTM_HeLa_CUDC101_4h_R1 1 SDTSSPEVR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.005)DT(0.056)S(0.469)S(0.469)PEVR 144.65 0.0012799 104630000 5364.3 3615 5706.9 5512.8 4442 4127.5 3692.5 1880 5790.8 6657 TRUE FALSE FALSE 4735.504886 3726.373865 6015.432276 5737.635812 4114.32251 4048.774814 3834.920962 2094.011601 5552.100773 6617.403868 0.715613703 0.563117189 0.909032061 0.867052386 0.621742694 0.611837345 0.579520464 0.316440048 0.83901495 1 12.69204962 -5.069752469 0.114164217 1.187083114 4.71E-21 0.540034943 0.131401238 16.93692281 0.43558643 1.200832011 3.740241231 8.52E-06 5.069752469 -1.187083114 AS(ph)PGGVSTSSSDGK ddPTM_HeLa_CUDC101_4h_R1 2 ASPGGVSTSSSDGK 14 0 P54259 P54259 ATN1 Atrophin-1 1 0 AS(0.998)PGGVS(0.001)TSSSDGK;AS(1)PGGVSTSSSDGK ; 173.33 3.51E-07 31411000 5247.5 3895.1 4258.7 4154 3583.3 3565.7 3025.3 2666.2 4763.2 5044.4 TRUE FALSE FALSE 4632.396005 4015.103414 4488.938204 4323.418075 3318.967098 3497.690213 3141.986834 2969.709431 4566.85888 5014.395684 0.923819398 0.800715314 0.895210208 0.86220122 0.661887754 0.697529759 0.626593319 0.592236755 0.910749603 1 12.29186013 -5.067474235 0.304765167 1.004154044 0.380427144 0.850541661 0.052334827 0.972693288 0.097066987 0.023040109 0.214040084 8.56E-06 5.067474235 -0.6237269 NRT(ph)PAKVEDAADSATKPENLSSK ddPTM_HeLa_CUDC101_4h_R1 1 NRTPAKVEDAADSATKPENLSSK 23 3 P46013 P46013 MKI67 Antigen KI-67 1 0 NRT(1)PAKVEDAADSATKPENLSSK 52.769 0.017666 8737900 1387.1 1336.7 1517.5 1562.6 1301.9 1226.9 990.5 363.37 1294.5 1943.1 TRUE FALSE FALSE 1224.506241 1377.882143 1599.54064 1626.329582 1205.861431 1203.498927 1028.703917 404.734572 1241.140162 1931.542355 0.63395257 0.713358493 0.828115747 0.841984944 0.624299761 0.623076643 0.532581599 0.209539579 0.642564301 1 10.9155376 -5.067155359 0.126110438 1.123136429 1.18E-34 0.39594423 0.155898794 14.80347432 0.426240256 0.94256923 3.257108549 8.57E-06 5.067155359 -1.123136429 SDAGLES(ph)DTAMK ddPTM_HeLa_CUDC101_4h_R1 2 SDAGLESDTAMK 12 0 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 0 SDAGLES(0.953)DT(0.047)AMK;S(0.003)DAGLES(0.951)DT(0.045)AMK ; 185.2 1.09E-10 127134000 5499.3 5185.9 5752.2 5394.3 5453.8 6233.9 6351.8 5485.9 5116.1 6125.8 TRUE FALSE FALSE 4854.68039 5345.671432 6063.181331 5614.30287 5051.48404 6114.998744 6596.791054 6110.392681 4905.212193 6089.363469 0.797239386 0.877870316 0.995700349 0.921985179 0.829558634 1.004209845 1.083330152 1.003453434 0.805537757 1 12.57207571 -5.06601228 6.298251043 0.904414141 1.043782861 0.457774025 0.06969403 0.188368034 14.29378884 0.011896088 0.03113388 8.59E-06 5.06601228 0.139368721 AGASIPSSGAAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 AGASIPSSGAASPR 14 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 AGASIPSSGAAS(1)PR;AGASIPSSGAAS(1)PR ; 198.29 1.60E-16 212930000 8753.1 8928.6 8570.1 7971.1 9193.3 7801.2 7546.5 6434.8 8615.3 9186.3 TRUE FALSE FALSE 7727.074887 9203.679583 9033.425529 8296.195912 8515.128575 7652.405108 7837.571033 7167.311622 8260.173687 9131.659479 0.846185176 1.007886858 0.989242487 0.908509119 0.932484243 0.838008155 0.858285512 0.784885993 0.904564357 1 13.15666135 -5.064213033 1.375722711 0.936997495 0.805801593 0.528818752 0.049495054 0.424681479 1.405720792 0.009864852 0.050677413 8.63E-06 5.064213033 -0.131195902 KSEDSLLRNS(ph)DEEESASESELWK ddPTM_HeLa_CUDC101_4h_R1 1 KSEDSLLRNSDEEESASESELWK 23 2 Q70Z53 Q70Z53 FRA10AC1 Protein FRA10AC1 1 0 KS(0.141)EDS(0.369)LLRNS(0.477)DEEES(0.007)AS(0.007)ESELWK 44.963 0.028938 9550800 1641.9 1725.4 1792.8 1325.4 2254.3 1261.7 1173.3 1110.4 1976.1 1683.9 TRUE FALSE FALSE 1449.438971 1778.557529 1889.724191 1379.455541 2088.00478 1237.635175 1218.554574 1236.803448 1894.644322 1673.884088 0.865913585 1.062533267 1.128945669 0.824104579 1.247401057 0.739379258 0.72798026 0.738882373 1.131885018 1 10.70898391 -5.063679679 24.9999724 0.969958636 0.733490816 0.484149586 0.130423191 137.4118447 53946.24808 0.016811865 0.042862071 8.64E-06 5.063679679 -0.236467821 STAQQELDGKPASPT(ph)PVIVASHTANKEEK ddPTM_HeLa_CUDC101_4h_R1 1 STAQQELDGKPASPTPVIVASHTANKEEK 29 2 H0YAC7;P35606-2;P35606 H0YAC7 COPB2 Coatomer subunit beta 1 0 STAQQELDGKPAS(0.144)PT(0.856)PVIVASHTANKEEK 138.23 2.94E-16 18577000 3341.4 3010.4 3201.3 2915.3 3723.8 3016.5 2663.2 2876.2 2751.2 3260.6 TRUE FALSE FALSE 2949.726157 3103.146856 3374.371961 3034.198535 3449.102693 2958.965288 2765.920516 3203.614982 2637.794372 3241.205806 0.910070614 0.957405065 1.041085375 0.936132636 1.064141835 0.912921137 0.853361583 0.98840221 0.813831188 1 11.66231491 -5.06286764 24.9997761 0.968319485 0.911444709 0.055982414 0.072932326 281.3828946 111893.5621 0.008008905 0.020418813 8.65E-06 5.06286764 -0.056874775 RYS(ph)GNMEYVISR ddPTM_HeLa_CUDC101_4h_R1 2 RYSGNMEYVISR 12 1 O95835;O95835-2 O95835 LATS1 Serine/threonine-protein kinase LATS1 1 0 RY(0.002)S(0.998)GNMEYVISR;RY(0.005)S(0.995)GNMEYVISR ; 127.05 0.0011609 38025000 2614.5 2182.23 2503.5 2296.9 2760.1 2122.7 1962.65 1748.39 1955.52 2250.25 TRUE FALSE FALSE 2308.032273 2249.46192 2638.846783 2390.57751 2556.492922 2082.213034 2038.350068 1947.41965 1874.912638 2236.865413 1.031815441 1.005631321 1.179707446 1.068717633 1.142890809 0.93086201 0.911252888 0.870602066 0.838187504 1 11.12726274 -5.062753014 8.058453117 1.038850887 0.898173332 0.338517579 0.086846151 0.198787778 23.65989149 0.009179209 0.023636573 8.65E-06 5.062753014 -0.140677555 ESPSST(ph)TPPIEISSSR ddPTM_HeLa_CUDC101_4h_R1 2 ESPSSTTPPIEISSSR 16 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 0 ES(0.012)PS(0.026)S(0.137)T(0.738)T(0.087)PPIEISSSR;ESPS(0.022)S(0.124)T(0.731)T(0.124)PPIEISSSR ; 159.41 0.00032982 17697400 5925.5 5213.1 4757.1 4416.2 5008.4 5313.8 5029.8 5115.1 5471.5 5172.9 TRUE FALSE FALSE 5230.921872 5373.709432 5014.283215 4596.311724 4638.94031 5212.448118 5223.801071 5697.382308 5245.962454 5142.131361 1.017267259 1.045035425 0.97513713 0.893853424 0.902143486 1.013674633 1.015882463 1.107980701 1.020192229 1 12.32815075 -5.061754773 0.002232751 1.40649818 0.58874195 0 0.060369572 1371713.204 650.0586766 117649.8997 120447.5 8.67E-06 5.061754773 -0.817756229 LTEVPVEPVLTVHPES(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 LTEVPVEPVLTVHPESK 17 0 Q9H307 Q9H307 PNN Pinin 1 0 LTEVPVEPVLT(0.001)VHPES(0.999)K;LTEVPVEPVLTVHPES(1)K ; 151.89 6.64E-05 13718500 11470.1 9440.2 9342.7 9915 10828.9 11324.1 11128.9 10420.6 10539.3 10757.5 TRUE FALSE FALSE 10125.59227 9731.041373 9847.794622 10319.37656 10030.07362 11108.11166 11558.1454 11606.83898 10104.86559 10693.51391 0.946891017 0.909994736 0.920912873 0.965012684 0.937958627 1.038770955 1.080855694 1.085409256 0.94495277 1 13.38444838 -5.059254283 3.389079462 0.962419511 1.081272091 0.808560695 0.026883139 0.10473042 2.368952937 0.004930266 0.014782121 8.72E-06 5.059254283 0.118852579 SLGKDGS(ph)LEDDEDEEDDLDEGVGGK ddPTM_HeLa_CUDC101_4h_R1 2 SLGKDGSLEDDEDEEDDLDEGVGGK 25 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 S(0.011)LGKDGS(0.989)LEDDEDEEDDLDEGVGGK;S(0.005)LGKDGS(0.995)LEDDEDEEDDLDEGVGGK ; 87.05 1.65E-05 64216000 4790.5 3746.9 4193.5 4367.7 5130.7 4660.7 4713.1 4645.5 3921.8 4229.5 TRUE FALSE FALSE 4228.964852 3862.337548 4420.213295 4545.833685 4752.218483 4571.804913 4894.885846 5174.324942 3760.141744 4204.342746 1.005856351 0.918654301 1.05134466 1.081223382 1.130311863 1.087400621 1.164245196 1.230709591 0.8943471 1 12.03766457 -5.058309039 0.57336309 0.995538811 1.260894692 0.74918841 0.050093817 0.597393245 0.224254062 0.007967484 0.088768832 8.74E-06 5.058309039 0.265355881 NKENLQPQSSGVQGQVPIS(ph)PEPLQRPEMLK ddPTM_HeLa_CUDC101_4h_R1 1 NKENLQPQSSGVQGQVPISPEPLQRPEMLK 30 2 Q9H467 Q9H467 CUEDC2 CUE domain-containing protein 2 1 0 NKENLQPQS(0.006)S(0.034)GVQGQVPIS(0.96)PEPLQRPEMLK 71.794 1.85E-05 15749000 1823 1055.9 1165.6 1292.2 1185 1032.4 734.76 725.92 1265.9 855.78 TRUE FALSE FALSE 1609.310703 1088.431027 1228.615862 1344.901501 1097.584911 1012.70869 763.0999393 808.5557985 1213.719066 850.6897825 1.891771521 1.279468791 1.444258397 1.580954102 1.290229333 1.190455923 0.897036681 0.9504708 1.426746966 1 9.732489316 -5.058228225 1.835872262 1.429798362 0.910983376 0.460290843 0.214542006 0.380509094 2.416403432 0.048528722 0.197138356 8.75E-06 5.058228225 -0.518814986 EFDPTITDASLS(ph)LPSRR ddPTM_HeLa_CUDC101_4h_R1 2 EFDPTITDASLSLPSRR 17 1 E9PGZ1;Q05682-5;Q05682-4;C9J813;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682 E9PGZ1;E7EX44;Q05682 CALD1 Caldesmon 1 0 EFDPTITDAS(0.165)LS(0.832)LPS(0.003)RR;EFDPTIT(0.001)DAS(0.053)LS(0.887)LPS(0.06)RR ; 93.215 0.0028726 18470300 4725.7 3507.3 3591.2 3303.8 4635.9 4130.1 4391 3888.3 3509.4 3913.5 TRUE FALSE FALSE 4171.76061 3615.355756 3785.351135 3438.543244 4293.918893 4051.325224 4560.362341 4330.928355 3364.741047 3890.222328 1.072370743 0.929344251 0.973042365 0.883893761 1.103772106 1.041412259 1.172262651 1.113285563 0.864922558 1 11.92563689 -5.058107143 1.854324544 1.013392454 1.141176057 0.35097047 0.078643758 0.314801716 2.042973608 0.009986351 0.040283847 8.75E-06 5.058107143 0.127783604 S(ph)LDPADERDDVLAK ddPTM_HeLa_CUDC101_4h_R1 1 SLDPADERDDVLAK 14 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 S(1)LDPADERDDVLAK 75.877 0.019334 1875500 1197.9 946.84 1197.4 907.81 1062.5 1623.7 1703.6 1607 1176.4 1552 TRUE FALSE FALSE 1057.483978 976.0110181 1262.135066 944.8344157 984.1214918 1592.730628 1769.308423 1789.934384 1127.908294 1542.768635 0.685445603 0.632636026 0.818097437 0.61242781 0.637893116 1.032384631 1.146839768 1.160209213 0.731093612 1 10.59130601 -5.058087073 5.01121521 0.798400948 1.141834996 0.658612252 0.121277242 0.138849224 7.274848208 0.023056624 0.062606346 8.75E-06 5.058087073 0.343434048 TQEISRPNS(ph)PSEGEGESSDSR ddPTM_HeLa_CUDC101_4h_R1 2 TQEISRPNSPSEGEGESSDSR 21 1 A0A590UJ84;B1AKN3;Q9P2R6-2;Q9P2R6 A0A590UJ84 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 TQEIS(0.042)RPNS(0.685)PS(0.199)EGEGES(0.05)S(0.015)DS(0.01)R;TQEIS(0.001)RPNS(0.466)PS(0.13)EGEGES(0.154)S(0.219)DS(0.031)R ; 57.248 0.01279 20388100 957.91 1160.9 909.44 927.65 1091.02 812.25 641.3 607.26 1042.52 1086.27 TRUE FALSE FALSE 845.6252419 1196.665953 958.6070773 965.4835766 1010.537628 796.7576846 666.0351558 676.3880238 999.5468843 1079.808818 0.783124964 1.108220208 0.887756297 0.894124553 0.935848654 0.737869215 0.616808406 0.626396092 0.925670237 1 10.07656019 -5.056669842 2.776635436 0.912984617 0.621840421 0.712491264 0.080794222 0.140561173 2.119247929 0.014169459 0.045819449 8.78E-06 5.056669842 -0.291144196 QAPGVGAVGGGSPEREEVGAGYNS(ph)EDEYEAAAAR ddPTM_HeLa_CUDC101_4h_R1 2 QAPGVGAVGGGSPEREEVGAGYNSEDEYEAAAAR 34 1 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 QAPGVGAVGGGSPEREEVGAGY(0.457)NS(0.542)EDEYEAAAAR;QAPGVGAVGGGSPEREEVGAGY(0.458)NS(0.536)EDEY(0.006)EAAAAR ; 80.415 1.13E-07 16535300 555.7 230.42 288.59 306.42 430.64 307.13 0 118.32 184.89 418.69 TRUE FALSE FALSE 490.5616884 237.5189671 304.1920483 318.9171321 398.8725452 301.272007 0 131.7890705 177.2687559 416.1996133 1.178669256 0.570685218 0.73088018 0.766260039 0.95836837 0.723864217 0 0.31664871 0.425922443 1 8.701131814 -5.055172346 0.516879959 1.061264654 7.53E-21 0.199365945 0.298082685 1.097248051 0.322190028 0.052631074 0.606517258 8.81E-06 5.055172346 -1.061264654 S(ph)ASADNLTLPR ddPTM_HeLa_CUDC101_4h_R1 1 SASADNLTLPR 11 0 Q8ND76-3;Q8ND76-2;Q8ND76 Q8ND76-3 CCNY Cyclin-Y 1 0 S(0.971)AS(0.029)ADNLTLPR 113.52 0.0059814 15846000 2244.8 1346.4 1844.7 1670.2 1770.2 1621.4 1523.5 1285.9 1481.6 1749.5 TRUE FALSE FALSE 1981.667947 1387.880988 1944.430062 1738.317975 1639.615873 1590.474496 1582.261905 1432.281658 1420.527821 1739.093896 1.13948301 0.798048335 1.118070776 0.999553836 0.942798935 0.91454205 0.909819711 0.823579257 0.816820658 1 10.76412011 -5.053173933 0.5558738 1.054925381 0.792419706 0 0.116654258 1.547352745 0.537984611 0.019634391 0.222795406 8.85E-06 5.053173933 -0.262505675 DVEDMELS(ph)DVEDDGSKIIVEDRK ddPTM_HeLa_CUDC101_4h_R1 1 DVEDMELSDVEDDGSKIIVEDRK 23 2 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 DVEDMELS(1)DVEDDGSKIIVEDRK 58.332 0.0050347 7855400 1800.7 2003 2162.2 1885.7 2729.2 2300.4 2205.4 2850.3 1980.6 993.89 TRUE FALSE FALSE 1589.624676 2064.710056 2279.095072 1962.606997 2527.872353 2256.523703 2290.463017 3174.766631 1898.95883 987.9782981 1.6089672 2.08983341 2.30682706 1.986487963 2.558631458 2.283981042 2.318333329 3.213397133 1.922065326 1 9.948335542 -5.050693111 0.111242521 1.59E-10 4.97283383 0.533863181 0.377781007 7.450388876 0.184580577 2.212776486 6.779459007 8.90E-06 5.050693111 4.97283383 HYGIT(ph)SPISLAAPK ddPTM_HeLa_CUDC101_4h_R1 1 HYGITSPISLAAPK 14 0 G3XAH6;P51003;G3V457;G3V3I9;A0A0C4DGK1;P51003-2 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 0 HYGIT(0.45)S(0.45)PIS(0.1)LAAPK 197.36 8.70E-16 31656000 4548.1 3755.9 3209 3473.4 4654.6 3455.1 3118.4 2709.7 3906.8 3841.8 TRUE FALSE FALSE 4014.978612 3871.614827 3382.488247 3615.060265 4311.239431 3389.199724 3238.677733 3018.161295 3745.76005 3818.948803 1.051330829 1.013790712 0.88571186 0.946611346 1.128907365 0.887469275 0.848054766 0.79031206 0.980835367 1 11.89895986 -5.048257308 5.739289746 1.013513719 0.829293991 0.585823101 0.062274561 0.096932409 7.707434108 0.008998402 0.024084965 8.95E-06 5.048257308 -0.184219727 LDNS(ph)PNMNITQPSK ddPTM_HeLa_CUDC101_4h_R1 1 LDNSPNMNITQPSK 14 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 LDNS(1)PNMNITQPSK 211.57 8.15E-24 11314000 3264.6 2613 2834.1 2491 2601.3 2409.9 2112.8 1924.8 3252.2 3545.4 TRUE FALSE FALSE 2881.928537 2693.503433 2987.320019 2592.593747 2409.407282 2363.935173 2194.291404 2143.911452 3118.142939 3524.311803 0.817728027 0.764263659 0.847632158 0.735631207 0.683653268 0.67075086 0.62261557 0.608320595 0.88475229 1 11.78312585 -5.047385409 0.082545508 1.343033914 6.92E-13 0.856875509 0.044817107 8.306953439 0.148286701 0.759527419 1.784382336 8.97E-06 5.047385409 -1.343033914 HPRPT(ph)ETASDSEGNFETPEAETPIR ddPTM_HeLa_CUDC101_4h_R1 1 HPRPTETASDSEGNFETPEAETPIR 25 1 E5RFM9 E5RFM9 TACC1 1 0 HPRPT(0.418)ET(0.418)AS(0.135)DS(0.028)EGNFETPEAETPIR 45.913 0.032633 4519500 937.5 737.9 775.06 847.46 902.47 897.89 925.43 765.43 833.38 880.45 TRUE FALSE FALSE 827.6076712 760.6338244 816.962088 882.0230818 835.8965861 880.7642442 961.1241451 852.5634572 799.0277237 875.2130442 0.945607103 0.869084195 0.933443684 1.007781006 0.955077843 1.006342684 1.098160215 0.974121059 0.912952257 1 9.77349043 -5.046035619 5.07646711 0.964304047 1.039992561 0.326395991 0.049026088 0.182787897 10.99085964 0.006939541 0.018995404 8.99E-06 5.046035619 0.075688514 STTSVS(ph)EEDVSSR ddPTM_HeLa_CUDC101_4h_R1 1 STTSVSEEDVSSR 13 0 Q96IZ0 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein 1 0 STT(0.003)S(0.002)VS(0.995)EEDVSSR 140.33 0.000744 23849000 1549.6 1412.2 1435.4 1403.3 1644.1 1413 1323.1 1250 1526.9 1455.2 TRUE FALSE FALSE 1367.958237 1455.708208 1513.002066 1460.53264 1522.818019 1386.049379 1374.13241 1392.294947 1463.960536 1446.544406 0.945673172 1.006334961 1.045942357 1.009670103 1.052728152 0.958179627 0.949941395 0.962497205 1.012039817 1 10.4983949 -5.043976847 24.99535274 0.989611093 0.955679413 0.222736494 0.032341848 678.0634599 385393.6616 0.005556304 0.01416667 9.04E-06 5.043976847 -0.03393168 DLSPPDNHLS(ph)PQNDDALETR ddPTM_HeLa_CUDC101_4h_R1 2 DLSPPDNHLSPQNDDALETR 20 0 O94972-2;O94972-3;O94972 O94972-2 TRIM37 E3 ubiquitin-protein ligase TRIM37 1 0 DLS(0.001)PPDNHLS(0.998)PQNDDALET(0.001)R;DLS(0.005)PPDNHLS(0.994)PQNDDALET(0.001)R ; 57.41 0.019481 5883900 2206 1730.94 1482.12 1696.83 2044.43 2216.4 2269.7 2022.02 2286.98 2216.52 TRUE FALSE FALSE 1947.416024 1784.26821 1562.24789 1766.034062 1893.616472 2174.125863 2357.243089 2252.198584 2192.709716 2203.33604 0.883848849 0.809803034 0.709037506 0.801527334 0.859431533 0.98674275 1.069851827 1.022176619 0.995177166 1 11.10547383 -5.04384899 4.31979263 0.899645913 1.043956034 0.387324185 0.087397728 0.226400676 9.205066528 0.015223279 0.043227589 9.04E-06 5.04384899 0.144310121 EIDIS(ph)HHVK ddPTM_HeLa_CUDC101_4h_R1 1 EIDISHHVK 9 0 D6RA62;D6RE03;F2Z2J1;Q15349;Q15349-3;Q15349-2 D6RA62 RPS6KA2 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-2 1 0 EIDIS(1)HHVK 86.472 0.033647 2321100 1318.4 1225 657.54 1054.2 1363.5 915.58 894.39 727.75 857.82 982.98 TRUE FALSE FALSE 1163.859151 1262.740798 693.0886013 1097.194833 1262.917321 898.116837 928.8869219 810.5941183 822.4602965 977.1331912 1.191095708 1.292291378 0.709308217 1.122871316 1.292472032 0.91913451 0.950624675 0.82956359 0.84170746 1 9.932411417 -5.040919298 24.16714305 1.093085751 0.90129032 0.139421258 0.177946819 371.1830283 219222.5086 0.02280525 0.058151975 9.10E-06 5.040919298 -0.191795431 GYTS(ph)DSEVYTDHGR ddPTM_HeLa_CUDC101_4h_R1 1 GYTSDSEVYTDHGR 14 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 GYT(0.219)S(0.777)DS(0.003)EVYTDHGR 124.5 0.00076384 12375000 1633.8 1202.6 1444.3 1222.6 1366.1 1208.6 1280.8 869.66 1129.1 1702.9 TRUE FALSE FALSE 1442.288441 1239.650681 1522.383227 1272.462913 1265.325525 1185.547969 1330.200885 968.6585791 1082.55802 1692.771075 0.852028051 0.732320335 0.899343833 0.751704073 0.747487681 0.700359302 0.785812627 0.572232473 0.639518264 1 10.72517117 -5.040910986 0.063875564 1.44193559 7.20E-16 0 0.128128108 30.13004952 0.409436461 3.232749433 6.327777063 9.10E-06 5.040910986 -1.44193559 VDINT(ph)PDVDVHGPDWHLK ddPTM_HeLa_CUDC101_4h_R1 1 VDINTPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VDINT(1)PDVDVHGPDWHLK 76.668 0.017881 167810000 4269.9 2883.5 3314.2 2960.8 3052.3 2405 2032.1 1470.3 3133.3 2850.5 TRUE FALSE FALSE 3769.388795 2972.337217 3493.375677 3081.554222 2827.13791 2359.128632 2110.478778 1637.673009 3004.144048 2833.545099 1.33027309 1.048981792 1.232863976 1.08752609 0.997738808 0.832571408 0.744819194 0.577959041 1.060206894 1 11.46839245 -5.040424821 1.005305367 1.156856652 0.567094144 0.804242499 0.093596308 0.31300142 0.474570303 0.020173864 0.14761794 9.11E-06 5.040424821 -0.589762509 MLSS(ph)TPPTPIACAPSAVNQAAPHQQNR ddPTM_HeLa_CUDC101_4h_R1 1 MLSSTPPTPIACAPSAVNQAAPHQQNR 27 0 A0A088AWL3;O75376;O75376-2;E7EVK1 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 MLS(0.069)S(0.375)T(0.375)PPT(0.182)PIACAPSAVNQAAPHQQNR 111.04 3.49E-08 15411000 1125.4 1002.7 930.17 751.03 974.43 1050.9 1063.7 950.87 980.71 939.48 TRUE FALSE FALSE 993.482318 1033.591999 980.4578038 781.6602496 902.5482402 1030.855833 1104.727265 1059.113197 940.2847187 933.8919312 1.063808654 1.106757607 1.049862164 0.836992187 0.966437561 1.103827755 1.182928376 1.134085392 1.006845318 1 9.867111802 -5.039839544 5.015487548 1.019840397 1.156281954 0.445756277 0.069652197 0.154132318 9.47937686 0.010696739 0.029541318 9.12E-06 5.039839544 0.136441557 GQEEISGALPVAS(ph)PASSR ddPTM_HeLa_CUDC101_4h_R1 3 GQEEISGALPVASPASSR 18 0 Q9UBK8;Q9UBK8-1;H0Y9D5;H0Y8S9 Q9UBK8 MTRR Methionine synthase reductase 1 0 GQEEISGALPVAS(0.984)PAS(0.014)S(0.002)R;GQEEISGALPVAS(0.991)PAS(0.008)S(0.001)R;GQEEISGALPVAS(1)PASSR ;; 276.05 1.43E-86 53766000 7359 6503.5 6013.5 5735.4 6154.1 5763.5 5279.3 4414.9 6529.6 6756.1 TRUE FALSE FALSE 6496.389176 6703.865126 6338.608 5969.314403 5700.124304 5653.57084 5482.924369 4917.47437 6260.447124 6715.914417 0.96731268 0.99820586 0.943819055 0.88883122 0.8487488 0.841816987 0.816407719 0.732212185 0.932180897 1 12.71336813 -5.038742284 0.447423849 0.994437491 0.672485844 0.886843096 0.027803525 0.432902576 0.091075164 0.005556349 0.065547478 9.15E-06 5.038742284 -0.321951647 GSSGDSDS(ph)PGSSSLSLTR ddPTM_HeLa_CUDC101_4h_R1 1 GSSGDSDSPGSSSLSLTR 18 0 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 GSSGDS(0.001)DS(0.996)PGS(0.003)SSLSLTR 166.9 4.96E-06 11282000 1821.5 1766 1887.6 1457 1743.2 1645.3 1351.2 1343 2046.2 1676.1 TRUE FALSE FALSE 1607.986531 1820.408367 1989.649366 1516.422758 1614.607609 1613.918644 1403.316237 1495.881691 1961.85477 1666.130483 0.965102402 1.09259652 1.194173798 0.910146458 0.969076327 0.968662815 0.842260706 0.897817852 1.177491673 1 10.70228567 -5.038336396 1.404277284 1.004049688 0.865385424 0.290379486 0.093919287 0.490442341 1.692639958 0.012112069 0.063259684 9.16E-06 5.038336396 -0.138664264 CLPTSDSS(ph)PEPQQPPEDR ddPTM_HeLa_CUDC101_4h_R1 1 CLPTSDSSPEPQQPPEDR 18 0 Q9UPN4-3;Q9UPN4-2;I3L2J8;Q9UPN4 Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa 1 0 CLPTSDS(0.354)S(0.645)PEPQQPPEDR 251.28 1.90E-56 8001100 3133.4 2793.7 2700.4 2828.8 3114.1 2684.5 2131.6 2424.8 3339.9 2901.9 TRUE FALSE FALSE 2766.107602 2879.770586 2846.391792 2944.170691 2884.379047 2633.297635 2213.816526 2700.829431 3202.227908 2884.63937 0.958909329 0.998312169 0.98674095 1.020637353 0.999909756 0.912868923 0.767450014 0.936279751 1.110096445 1 11.49417525 -5.036894838 4.715602163 0.985693005 0.848468857 0.540462856 0.056963221 0.079424443 4.216984953 0.005410495 0.015178994 9.19E-06 5.036894838 -0.137224148 RNS(ph)SS(ph)PVS(ph)PASVPGQR ddPTM_HeLa_CUDC101_4h_R1 2 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 3 0 RNS(0.747)S(0.411)S(0.849)PVS(0.914)PAS(0.079)VPGQR;RNS(0.882)S(0.559)S(0.607)PVS(0.735)PAS(0.216)VPGQR ; 79.013 0.0018547 8511800 3059.8 2590.6 2675.9 2680.9 2537.69 2876.5 2828.5 2435.4 3231.6 2687.1 TRUE FALSE FALSE 2701.134882 2670.413315 2820.567248 2790.23869 2350.489664 2821.635555 2937.596192 2712.636092 3098.39208 2671.11701 1.011237947 0.999736554 1.055950465 1.044596204 0.879965069 1.056350413 1.099763201 1.015543715 1.159961196 1 11.38322746 -5.036738422 24.98605182 1.003326421 1.062754472 0.005430629 0.069217055 560.9701803 381519.5869 0.006375739 0.016260258 9.19E-06 5.036738422 0.059428052 ALLNLPGTQT(ph)SGEAK ddPTM_HeLa_CUDC101_4h_R1 1 ALLNLPGTQTSGEAK 15 0 Q96GM8;Q96GM8-2 Q96GM8 TOE1 Target of EGR1 protein 1 1 0 ALLNLPGT(0.005)QT(0.709)S(0.285)GEAK 136.39 0.0025545 14141000 1732 1395 1275 1424.3 1625.8 1285.2 1048 1071.2 1643.6 1327.1 TRUE FALSE FALSE 1528.977586 1437.978297 1343.930357 1482.38911 1505.867973 1260.686951 1088.421711 1193.141078 1575.850112 1319.20635 1.159013209 1.090032879 1.018741576 1.123697676 1.141495394 0.955640451 0.825057968 0.90443855 1.194544062 1 10.36545453 -5.036563963 4.338367966 1.080754199 0.867479169 0.707143417 0.062077543 0.094652753 4.024861982 0.009519466 0.027216047 9.19E-06 5.036563963 -0.21327503 DGS(ph)FGEGLTMK ddPTM_HeLa_CUDC101_4h_R1 2 DGSFGEGLTMK 11 0 Q9ULT0;Q9ULT0-4;G5E9G4 Q9ULT0 TTC7A Tetratricopeptide repeat protein 7A 1 0 DGS(1)FGEGLTMK;DGS(1)FGEGLTMK ; 176.32 3.76E-07 66112000 5988.5 4960.1 4054.4 4037 4579.9 4447.1 3606.9 3251.2 4371.5 4162.8 TRUE FALSE FALSE 5286.537108 5112.914802 4273.593128 4201.646309 4242.049901 4362.278977 3746.019341 3621.303466 4191.30492 4138.03948 1.277546319 1.235588695 1.03275794 1.015371247 1.025135193 1.054189791 0.905264282 0.875125403 1.012872144 1 12.01473169 -5.03587068 0.726097338 1.134401186 0.83984005 0.411649848 0.091828225 1.082233229 0.715961377 0.021034544 0.210305174 9.21E-06 5.03587068 -0.294561136 VQEHEDS(ph)GDSEVENEAK ddPTM_HeLa_CUDC101_4h_R1 2 VQEHEDSGDSEVENEAK 17 0 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 1 0 VQEHEDS(0.997)GDS(0.003)EVENEAK;VQEHEDS(0.999)GDS(0.001)EVENEAK ; 156.36 4.14E-05 165414000 8968.7 10314 8828.8 9156.8 9563.1 8567.5 7364.8 6893.1 11493.7 9959.1 TRUE FALSE FALSE 7917.402582 10631.76211 9306.111634 9530.253883 8857.649165 8404.089212 7648.862803 7677.782641 11019.92482 9899.86283 0.799748715 1.073930245 0.940024301 0.962665246 0.894724434 0.848909662 0.772623109 0.775544346 1.113139142 1 13.27319282 -5.035665046 1.963077781 0.923583793 0.769919255 0.379788934 0.090591856 0.324444765 2.3813149 0.012946991 0.051525255 9.21E-06 5.035665046 -0.153664538 KSEAPAEVTHFS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 KSEAPAEVTHFSPK 14 1 Q6PID6 Q6PID6 TTC33 Tetratricopeptide repeat protein 33 1 0 KSEAPAEVTHFS(1)PK;KSEAPAEVT(0.002)HFS(0.998)PK ; 102.69 0.0033417 65516000 7114.7 6050.3 6380.1 6534.4 7462.1 6263.7 5517.9 5331 6961.2 6912.4 TRUE FALSE FALSE 6280.725651 6236.702572 6725.027505 6800.901076 6911.63575 6144.230359 5730.727251 5937.859491 6674.25639 6871.284737 0.914054051 0.907647232 0.978714718 0.989756841 1.005872412 0.894189456 0.834011029 0.864155645 0.971325836 1 12.74636415 -5.035384525 4.889978051 0.960958232 0.851296968 0.691270761 0.032177592 0.105061837 6.236341658 0.00585808 0.016343743 9.22E-06 5.035384525 -0.109661264 EVS(ph)DSEAGGGPQGER ddPTM_HeLa_CUDC101_4h_R1 1 EVSDSEAGGGPQGER 15 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EVS(0.894)DS(0.106)EAGGGPQGER 160.63 6.13E-05 42682000 977.51 885.04 589.61 742.51 701.27 689.12 584.2 485.62 818.74 673.09 TRUE FALSE FALSE 862.9277596 912.3070334 621.4861001 772.7927672 649.5387092 675.9761842 606.7327897 540.9010179 784.9911907 669.0864307 1.289710447 1.363511486 0.928857725 1.154996921 0.97078446 1.010297255 0.906807793 0.808417258 1.173228382 1 9.386048776 -5.034365067 0.808066517 1.147049185 0.792493441 0.488826769 0.120639759 0.901374521 0.780840656 0.024656697 0.225738613 9.24E-06 5.034365067 -0.354555744 KIVEPEVVGES(ph)DSEVEGDAWR ddPTM_HeLa_CUDC101_4h_R1 3 KIVEPEVVGESDSEVEGDAWR 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 0 KIVEPEVVGES(0.983)DS(0.017)EVEGDAWR;KIVEPEVVGES(0.928)DS(0.072)EVEGDAWR;KIVEPEVVGES(0.9)DS(0.1)EVEGDAWR ;; 190.99 4.65E-14 90527000 8682 9522.9 8976.7 8853.8 12224.7 8531.6 7853.3 7510.4 11724.7 9958.8 TRUE FALSE FALSE 7664.309121 9816.289262 9462.007555 9214.896233 11322.90824 8368.873945 8156.204412 8365.353578 11241.4029 9899.564615 0.774206687 0.991587978 0.955800373 0.930838536 1.143778406 0.845377981 0.823895265 0.845022373 1.135545182 1 13.27314936 -5.03425873 24.99472627 0.923502208 0.83450299 0.120667619 0.112951643 1011.972023 738321.6017 0.016011924 0.04084921 9.24E-06 5.03425873 -0.088999218 DYS(ph)YER ddPTM_HeLa_CUDC101_4h_R1 1 DYSYER 6 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 DYS(0.998)Y(0.002)ER 60.019 0.038792 27861000 2650.8 2475.2 2214.3 1714.4 2445.5 2715.5 2708 2280.2 2570 2849.1 TRUE FALSE FALSE 2340.077242 2551.457978 2334.011756 1784.320642 2265.100337 2663.706362 2812.448467 2539.768751 2464.063512 2832.153426 0.826253698 0.900889745 0.824112046 0.630022592 0.799780236 0.940523326 0.993042411 0.896762417 0.870031789 1 11.46768371 -5.033927508 23.57700012 0.878376073 0.950372585 0.110340688 0.096737645 675.944423 469729.952 0.01697834 0.043324385 9.25E-06 5.033927508 0.071996512 EMEDKVT(ph)SPEKAEEAK ddPTM_HeLa_CUDC101_4h_R1 1 EMEDKVTSPEKAEEAK 16 2 P56211 P56211 ARPP19 cAMP-regulated phosphoprotein 19 1 0 EMEDKVT(0.964)S(0.036)PEKAEEAK 68.525 0.021403 11292000 3712.6 3393.5 3633 3290.1 3024.7 2678.5 2252 1615.4 3630.1 3805 TRUE FALSE FALSE 3277.414656 3498.049713 3829.410969 3424.284499 2801.573907 2627.412075 2338.860394 1799.290606 3480.465742 3782.367691 0.866498163 0.924830688 1.012437521 0.905328297 0.740693168 0.694647451 0.618358813 0.475704837 0.920181755 1 11.8850739 -5.033813819 0.835338007 0.943269333 0.448562954 0.909263895 0.050488245 0.264946425 0.249668743 0.010632745 0.094501148 9.25E-06 5.033813819 -0.494706379 EPPSS(ph)PLQPQK ddPTM_HeLa_CUDC101_4h_R1 3 EPPSSPLQPQK 11 0 Q92615;H0Y4V9;A0A087X183 Q92615 LARP4B La-related protein 4B 1 0 EPPS(0.188)S(0.812)PLQPQK;EPPS(0.225)S(0.775)PLQPQK;EPPS(0.208)S(0.792)PLQPQK ;; 145.14 0.0010827 93642000 11409.9 9342.3 8627.5 8458.5 8242.7 7836.3 7206 5557.1 7992.7 11097.7 TRUE FALSE FALSE 10072.44882 9630.12519 9093.928747 8803.474191 7634.652443 7686.835634 7483.937834 6189.697801 7663.237523 11031.69039 0.913046729 0.872951003 0.824345901 0.798016794 0.692065511 0.69679581 0.678403542 0.56108335 0.694656689 1 13.42936625 -5.033636792 0.266433211 1.014899487 0.36570168 0.398265651 0.097118402 0.638632586 0.049865126 0.015706045 0.132458421 9.25E-06 5.033636792 -0.649197807 SSFES(ph)PAQDQSWMFLGHSEVGDPSLDAR ddPTM_HeLa_CUDC101_4h_R1 1 SSFESPAQDQSWMFLGHSEVGDPSLDAR 28 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 S(0.177)S(0.177)FES(0.56)PAQDQS(0.086)WMFLGHSEVGDPSLDAR 51.034 0.014385 5797000 504.25 550.33 435.76 497.53 755.75 382.87 343.71 310.22 716.76 539.53 TRUE FALSE FALSE 445.1425794 567.285015 459.3185037 517.8214239 699.9998282 375.5673927 356.9670098 345.5341908 687.2148494 536.3208516 0.82999305 1.057734402 0.856424848 0.96550679 1.305188538 0.700266252 0.665584806 0.64426768 1.281350235 1 9.066952535 -5.032687509 24.97478769 0.951473336 0.661925881 0.463125055 0.164891867 376.6522701 287779.9985 0.018738018 0.047815891 9.27E-06 5.032687509 -0.289547455 S(ph)RTGS(ph)ESSQTGTSTTSSR ddPTM_HeLa_CUDC101_4h_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 S(0.989)RT(0.013)GS(0.998)ESSQTGTSTTSSR 148.66 7.78E-05 57432000 2166.7 2080.3 2256.5 2588.6 2836.1 2558.8 3241.9 2863.9 2053.3 2390.5 TRUE FALSE FALSE 1912.722711 2144.391577 2378.493216 2694.174297 2626.886553 2509.995153 3366.941169 3189.9148 1968.662105 2376.2812 0.804922713 0.902414907 1.000930873 1.133777558 1.105461152 1.056270257 1.416895092 1.342397861 0.828463443 1 11.21448985 -5.032318852 0.637080418 0.907973104 1.486797717 0.778316058 0.089981526 0.616883966 0.294253732 0.019662518 0.21608399 9.28E-06 5.032318852 0.578824612 GALHTVS(ph)HEDIR ddPTM_HeLa_CUDC101_4h_R1 1 GALHTVSHEDIR 12 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2;H0YD72 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 GALHT(0.394)VS(0.606)HEDIR 86.756 0.016505 279340000 5676.8 4220.3 4356.7 4242.3 5235.6 4590.3 3718.1 3969.2 4468.9 4624.4 TRUE FALSE FALSE 5011.374109 4350.322441 4592.23638 4415.319331 4849.380219 4502.747675 3861.508362 4421.037684 4284.69005 4596.893863 1.090165285 0.946361297 0.99898682 0.960500604 1.054925426 0.979519608 0.840025565 0.961744564 0.932083746 1 12.16644364 -5.031466073 0.62603055 1.03521714 0.875625137 0.032032288 0.063850078 1.326056011 0.605710749 0.011390543 0.126569932 9.30E-06 5.031466073 -0.159592003 RS(ph)SDPALIGLSTSVSDSNFSSEEPSRK ddPTM_HeLa_CUDC101_4h_R1 1 RSSDPALIGLSTSVSDSNFSSEEPSRK 27 2 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-5;Q8TEW0-9;Q8TEW0-8;Q5VWU8;Q8TEW0-10 Q5VWV2 PARD3 Partitioning defective 3 homolog 1 0 RS(0.495)S(0.495)DPALIGLS(0.007)T(0.002)S(0.001)VSDSNFSSEEPSRK 62.594 0.0020757 10039000 830.34 632.59 762.17 638.85 710.47 858.63 867.6 787.17 809.35 823.69 TRUE FALSE FALSE 733.0088039 652.0793481 803.3752156 664.9050643 658.0600436 842.2530633 901.0636226 876.7782509 775.9882504 818.7906552 0.895233475 0.796393246 0.981172917 0.812057466 0.80369755 1.028654953 1.100481078 1.070821028 0.947724849 1 9.677350827 -5.030976127 10.19700219 0.920645662 1.080492775 0.535436022 0.072622431 0.418792502 137.0964036 0.01178517 0.030645863 9.31E-06 5.030976127 0.159847113 SQIEESLGFCSAVST(ph)PEVER ddPTM_HeLa_CUDC101_4h_R1 1 SQIEESLGFCSAVSTPEVER 20 0 O94885 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 0 SQIEESLGFCS(0.004)AVS(0.12)T(0.876)PEVER 107.72 0.00090017 3805100 1736.1 1532.4 1467.1 1486.1 1836.1 1319 1102.6 1271.4 1767.7 1277 TRUE FALSE FALSE 1532.59699 1579.611428 1546.415864 1546.709581 1700.654561 1293.842273 1145.127651 1416.131037 1694.834658 1269.404347 1.207335545 1.244372159 1.218221654 1.218453037 1.339726435 1.01925149 0.902098416 1.115587039 1.335141684 1 10.30993597 -5.030146288 24.83028927 1.145081198 0.996800702 0.26126284 0.119417033 706.7132074 582091.6749 0.018161032 0.046377863 9.33E-06 5.030146288 -0.148280496 S(ph)TPAMMNGQGSTTSSSK ddPTM_HeLa_CUDC101_4h_R1 1 STPAMMNGQGSTTSSSK 17 0 Q6ZN18-2;Q6ZN18;F5GZR7;A0A669KBC9;A0A669KBL4;G5EA50;Q6ZN18-3 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 S(0.636)T(0.364)PAMMNGQGSTTSSSK 116.96 0.00088199 2758700 1005.9 563.41 563.69 757.13 909.65 620.4 578.79 511.04 489 546.55 TRUE FALSE FALSE 887.9899268 580.7679943 594.1647865 788.009034 842.5469318 608.5669037 601.1141242 569.2147279 468.843213 543.2990963 1.63444028 1.068965508 1.093623734 1.45041477 1.550797595 1.120132369 1.106414732 1.047700487 0.862955996 1 9.085602837 -5.02993423 24.15199937 1.299912305 1.086111432 0.030856452 0.240033459 725.2591101 585165.8499 0.037305257 0.095294014 9.33E-06 5.02993423 -0.213800873 AELEEMEEVHPS(ph)DEEEEDATKAEGFYQK ddPTM_HeLa_CUDC101_4h_R1 2 AELEEMEEVHPSDEEEEDATKAEGFYQK 28 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 AELEEMEEVHPS(0.998)DEEEEDAT(0.002)KAEGFYQK;AELEEMEEVHPS(1)DEEEEDATKAEGFYQK ; 119.28 1.17E-13 37136000 8491.8 5668.1 6772.5 6769.6 6497.5 6149.5 5149.4 5177.7 6843.5 4967.6 TRUE FALSE FALSE 7496.404077 5842.727443 7138.641836 7045.693549 6018.19237 6032.208533 5348.014083 5767.108439 6561.408033 4938.052494 1.518089183 1.183204806 1.445639115 1.426816251 1.21873803 1.221576429 1.083020905 1.167891278 1.328744083 1 12.26972646 -5.028761482 2.564094923 1.27327548 1.126536044 0.174477753 0.143689224 0.621538734 8.02275587 0.02965413 0.102035967 9.36E-06 5.028761482 -0.146739435 TDS(ph)TSDGRPAWMR ddPTM_HeLa_CUDC101_4h_R1 3 TDSTSDGRPAWMR 13 1 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6I5;A0A2R8Y542 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 1 0 TDS(0.499)T(0.499)S(0.003)DGRPAWMR;T(0.003)DS(0.5)T(0.214)S(0.283)DGRPAWMR;T(0.016)DS(0.833)T(0.105)S(0.046)DGRPAWMR ;; 115.37 0.011049 1184589000 10884.3 7847.8 8705.9 8891.4 9740.8 10261.5 9891.1 9616.1 8715.3 8441.9 TRUE FALSE FALSE 9608.458854 8089.581416 9176.567288 9254.029724 9022.24059 10065.77898 10272.60304 10710.75795 8356.051645 8391.687203 1.14499726 0.963999398 1.093530665 1.102761519 1.07514024 1.199494064 1.224140366 1.276353336 0.995753469 1 13.03474519 -5.028724385 1.160334359 1.063324361 1.28133867 0.709028275 0.053368571 0.326023094 0.705067281 0.00956643 0.061371325 9.36E-06 5.028724385 0.218014309 SSGLS(ph)TPVPPSAGHLAHVR ddPTM_HeLa_CUDC101_4h_R1 1 SSGLSTPVPPSAGHLAHVR 19 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 S(0.071)S(0.071)GLS(0.429)T(0.429)PVPPSAGHLAHVR 67.902 0.0026469 0 1115.4 472.79 554.81 514.7 963.12 573.15 525.34 479.66 549.15 374.02 TRUE FALSE FALSE 984.6545028 487.3560995 584.8047068 535.6916907 892.0725564 562.2181187 545.6025398 534.2625555 526.5138046 371.7953124 2.648377938 1.3108183 1.57292114 1.440824219 2.399364722 1.512171079 1.467480954 1.436980343 1.4161389 1 8.538364771 -5.027933177 24.75730154 1.760716419 1.461628956 0.024174275 0.472640029 1774.028548 1572330.989 0.090793094 0.232115541 9.38E-06 5.027933177 -0.299087463 NKELYEINPPEIS(ph)EEIIGSPIPEPR ddPTM_HeLa_CUDC101_4h_R1 1 NKELYEINPPEISEEIIGSPIPEPR 25 1 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 NKELYEINPPEIS(0.634)EEIIGS(0.366)PIPEPR 113.43 7.02E-08 13439000 2564.2 2393 2058.3 2000.6 2765.1 2095.8 1820.5 1696.3 2403.6 2335.5 TRUE FALSE FALSE 2263.628363 2466.725494 2169.577924 2082.193115 2561.124082 2055.826107 1890.717295 1889.399935 2304.522591 2321.608342 0.975025943 1.062507163 0.934515045 0.896875273 1.103168022 0.885518056 0.814399768 0.813832334 0.992640554 1 11.18090889 -5.027131484 6.537798268 0.989475142 0.821789509 0.643797982 0.055078243 0.076410338 12.08235799 0.007254444 0.019601414 9.39E-06 5.027131484 -0.167685634 GADNDGSGSESGYTT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 GADNDGSGSESGYT(0.477)T(0.523)PK 110.74 0.0048896 102880000 13699 13345 13183 12992 13135 10941 9438.5 7704.5 13548 13868 TRUE FALSE FALSE 12093.22399 13756.14363 13895.71286 13521.86992 12166.05722 10732.31865 9802.546107 8581.549137 12989.54571 13785.51252 0.877241522 0.997869583 1.007993924 0.980875386 0.882524839 0.778521556 0.711075928 0.622504903 0.94226063 1 13.75086528 -5.025914001 1.392678237 0.953288482 0.635551439 0.898918673 0.040700224 0.151370166 0.510518399 0.008383627 0.044923956 9.42E-06 5.025914001 -0.317737044 RAS(ph)PAPSDSSPGEPFVGGPVSSPR ddPTM_HeLa_CUDC101_4h_R1 1 RASPAPSDSSPGEPFVGGPVSSPR 24 1 O60346 O60346 PHLPP1 PH domain leucine-rich repeat-containing protein phosphatase 1 1 0 RAS(0.693)PAPS(0.194)DS(0.103)S(0.01)PGEPFVGGPVSSPR 89.631 2.25E-05 9489700 499.57 473.88 539.67 519.17 642.43 459.25 440.22 363.39 511.82 544.95 TRUE FALSE FALSE 441.0111619 488.4796811 568.8461926 540.3439966 595.0392188 450.4905714 457.1994329 404.7568487 490.722563 541.7086132 0.814111408 0.901738812 1.050096267 0.997480903 1.098448879 0.831610501 0.843995133 0.747185551 0.905879196 1 9.08137322 -5.025837208 24.10302368 0.938456955 0.806143362 0.4146568 0.082530147 476.2794457 444313.0243 0.014461995 0.037045462 9.42E-06 5.025837208 -0.132313593 TPTGEGLLDS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 TPTGEGLLDSPSK 13 0 O95425-3;O95425;A0A6I8PIX7;O95425-2;O95425-4;A0A0J9YWY6 O95425-3 SVIL Supervillin 1 0 TPTGEGLLDS(0.999)PS(0.001)K;TPTGEGLLDS(0.998)PS(0.002)K ; 201.72 8.37E-17 310780000 7071.3 6282.8 6679.3 5832.5 6000.9 5601 4280.1 3871.9 6337.1 6387.5 TRUE FALSE FALSE 6242.412933 6476.365621 7040.403162 6070.37456 5558.225562 5494.170257 4445.184891 4312.661445 6075.882056 6349.506866 0.983133504 1.019979308 1.108811016 0.956038743 0.875379093 0.86529086 0.700083484 0.67921203 0.956906132 1 12.63242883 -5.025077063 1.086182599 1.001899026 0.648277236 0.873855333 0.046269346 0.166535969 0.304691463 0.007135905 0.049324314 9.44E-06 5.025077063 -0.353621791 RHYTLDAS(ph)LPLR ddPTM_HeLa_CUDC101_4h_R1 1 RHYTLDASLPLR 12 1 Q8IXX5-2;Q8IXX5;Q1AE95 Q8IXX5-2 TMEM183A;TMEM183B Transmembrane protein 183A;Transmembrane protein 183B 1 0 RHYTLDAS(1)LPLR 67.153 0.03335 99247000 4372.2 3991 3787.9 3378.8 4189.1 4184.7 4048 3803.1 4494.7 4094.8 TRUE FALSE FALSE 3859.697344 4113.957979 3992.685332 3516.602068 3880.078439 4104.88382 4204.132716 4236.029531 4309.426564 4070.443947 0.948225155 1.010690242 0.980896773 0.863935756 0.953232249 1.008460962 1.032843781 1.040679981 1.058711683 1 11.99097044 -5.025029783 3.53503436 0.968386136 1.03545373 0.217949366 0.047676935 0.217281453 5.689807919 0.005986008 0.018301674 9.44E-06 5.025029783 0.067067595 SS(ph)PVCSTAPVETEPK ddPTM_HeLa_CUDC101_4h_R1 2 SSPVCSTAPVETEPK 15 0 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 0 S(0.228)S(0.772)PVCSTAPVETEPK;S(0.399)S(0.601)PVCSTAPVETEPK ; 288.96 1.41E-103 31849100 6255.6 4878.5 4563.4 4833.6 5482.6 4847.8 4368.3 4223 5516.3 4369.9 TRUE FALSE FALSE 5522.328051 5028.800803 4810.111208 5030.735101 5078.159521 4755.336292 4536.786794 4703.72925 5288.915779 4343.90764 1.271281185 1.157667524 1.107323545 1.158112814 1.16903027 1.09471395 1.044402223 1.082833623 1.217547935 1 12.08477771 -5.022808829 5.813181772 1.136150609 1.06450793 0.201727248 0.068578203 0.33915012 38.9132901 0.014154178 0.039084683 9.49E-06 5.022808829 -0.071642679 AASSS(ph)SPGS(ph)PVASSPSR ddPTM_HeLa_CUDC101_4h_R1 1 AASSSSPGSPVASSPSR 17 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 2 0 AAS(0.011)S(0.089)S(0.811)S(0.103)PGS(0.765)PVAS(0.211)S(0.008)PS(0.002)R 123.76 0.0028169 19219000 2578.4 2139.1 2213.7 2271.4 2505.9 2930.2 3034 2994.7 2142.8 2206.5 TRUE FALSE FALSE 2276.163861 2205.003136 2333.379318 2364.03751 2321.044749 2874.311317 3151.022396 3335.604543 2054.472877 2193.37564 1.037744661 1.005301188 1.063830233 1.077807862 1.058206678 1.310451007 1.436608641 1.520763011 0.936671694 1 11.0989372 -5.021287306 1.367330396 1.021679071 1.53128123 0.961530045 0.037609778 0.04820002 0.155366391 0.004159376 0.022842222 9.52E-06 5.021287306 0.509602159 VLSVAEVAATTAT(ph)PDGGPR ddPTM_HeLa_CUDC101_4h_R1 1 VLSVAEVAATTATPDGGPR 19 0 Q147X3;Q147X3-2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 VLSVAEVAAT(0.02)T(0.392)AT(0.588)PDGGPR 176.44 3.77E-07 5547500 1207.6 808.25 754.07 865.89 832.34 692.94 615.82 470.27 889.91 752.44 TRUE FALSE FALSE 1066.046959 833.1512245 794.8373051 901.2047369 770.9399365 679.723324 639.5723837 523.8036359 853.2275331 747.9644534 1.4252642 1.11389147 1.062667218 1.204876425 1.030717346 0.908764208 0.855083929 0.700305521 1.14073273 1 9.546825898 -5.020974244 0.87060965 1.193462172 0.673897958 0.663469194 0.110076286 0.608847464 0.632721806 0.026930346 0.234771481 9.53E-06 5.020974244 -0.519564214 SCTPS(ph)PDQISHR ddPTM_HeLa_CUDC101_4h_R1 3 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 SCTPS(1)PDQISHR;S(0.001)CTPS(0.999)PDQISHR;S(0.01)CT(0.002)PS(0.989)PDQISHR ;; 149.22 3.53E-08 74255000 10652.2 9525.6 9641.8 10464.9 12029.6 12252.4 11168.4 12115.2 11969.1 10451.6 TRUE FALSE FALSE 9403.565264 9819.072445 10163.06487 10891.70386 11142.20037 12018.70588 11599.16893 13494.3454 11475.72863 10389.43342 0.905108574 0.945101821 0.978211656 1.048344353 1.072455054 1.156820146 1.116439026 1.298852868 1.104557695 1 13.34282936 -5.020713005 0.662986646 0.952477445 1.303795146 0.668482459 0.062889302 0.446616173 0.233335895 0.008962198 0.09780181 9.53E-06 5.020713005 0.351317701 LEQLESGEEELVLAEYESDEEKKVAS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 LEQLESGEEELVLAEYESDEEKKVASR 27 2 F5GXJ8;F6WZM0;F5H235;C9K0E8;B4DMS8;Q96FC9-5;Q96FC9-4;Q96FC9-3;Q96FC9-2;Q96FC9 F5GXJ8 DDX11 Probable ATP-dependent RNA helicase DDX11 1 0 LEQLESGEEELVLAEY(0.189)ES(0.221)DEEKKVAS(0.59)R 68.97 0.00010404 6654000 3552.8 3040.8 3165.4 3105.5 3512.6 2782 2483.4 2318.4 3130.3 2589.8 TRUE FALSE FALSE 3136.34617 3134.483444 3336.531099 3232.155713 3253.482496 2728.937985 2579.18557 2582.317285 3001.267709 2574.395754 1.218284393 1.217560835 1.29604436 1.255500716 1.263784906 1.060030487 1.001860559 1.003077044 1.165814426 1 11.33001814 -5.02021214 12.4363316 1.150387377 1.009548915 0.401433911 0.087864346 1.561023434 962.7242228 0.017377742 0.045898618 9.55E-06 5.02021214 -0.140838461 GMYDGPVFDLTTT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 GMYDGPVFDLTTTPK 15 0 Q14195-2;Q14195;H0YBT4 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 GMYDGPVFDLT(0.029)T(0.472)T(0.499)PK;GMYDGPVFDLT(0.029)T(0.142)T(0.829)PK ; 157.86 0.0004009 584951800 8752.7 7789.2 7008.9 7145.8 8038.4 8389.4 8464.8 7444.2 7840.9 8116.7 TRUE FALSE FALSE 7726.721774 8029.17602 7387.822335 7437.236611 7445.423247 8229.386173 8791.290172 8291.617638 7517.694783 8068.421507 0.957649742 0.995135915 0.915646552 0.921770957 0.922785608 1.019949957 1.089592328 1.027662924 0.931742941 1 12.97807074 -5.019495781 6.860861673 0.968056213 1.058057946 0.600027419 0.034702385 0.094799583 20.48360109 0.005250289 0.014326775 9.56E-06 5.019495781 0.090001733 S(ph)NSPLPVPPSK ddPTM_HeLa_CUDC101_4h_R1 1 SNSPLPVPPSK 11 0 Q13247-3;Q13247 Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 1 0 S(0.562)NS(0.436)PLPVPPS(0.002)K 96.371 0.017328 43324000 6074.4 5276.1 4647.7 4926.4 5444.5 4662.2 4544.3 4062.5 6081.6 5700.8 TRUE FALSE FALSE 5362.36804 5438.650387 4898.968721 5127.319886 5042.870082 4573.276303 4719.575173 4524.958579 5830.913874 5666.891388 0.946262717 0.959723774 0.864489609 0.904785275 0.88988296 0.807016756 0.83283318 0.798490437 1.028943997 1 12.46834184 -5.018719964 0.240679098 1.010099556 0.67635876 0.885830631 0.025527163 1.546830478 0.102098915 0.02003214 0.153015073 9.58E-06 5.018719964 -0.333740796 SEAPAEVTHFS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 SEAPAEVTHFSPK 13 0 Q6PID6 Q6PID6 TTC33 Tetratricopeptide repeat protein 33 1 0 SEAPAEVT(0.024)HFS(0.976)PK;SEAPAEVT(0.005)HFS(0.995)PK;SEAPAEVT(0.001)HFS(0.999)PK;SEAPAEVT(0.043)HFS(0.957)PK ;;; 173.71 3.28E-07 756170000 17455.1 15282.6 17024 15599 18522.8 16278.4 15315.7 14040.6 16533.1 16988.3 TRUE FALSE FALSE 15409.03964 15753.43879 17944.36893 16235.19464 17156.40995 15967.91664 15906.43168 15638.92515 15851.59862 16887.25284 0.912465739 0.93285977 1.062598465 0.961387551 1.015938478 0.945560346 0.941919437 0.9260787 0.938672428 1 14.04364703 -5.016190147 23.88886972 0.96779779 0.936434248 0.128534929 0.042012712 831.109817 1226328.745 0.00678708 0.017912054 9.63E-06 5.016190147 -0.031363543 TYS(ph)APAINAIQGGSFESPK ddPTM_HeLa_CUDC101_4h_R1 1 TYSAPAINAIQGGSFESPK 19 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 T(0.047)YS(0.953)APAINAIQGGSFESPK 131.31 4.02E-05 10769000 1777.5 1171.8 1207.5 1210.7 1291.4 1667.5 1738.5 1486.5 1071.6 1455.8 TRUE FALSE FALSE 1569.144145 1207.901769 1272.781102 1260.077579 1196.135995 1635.695216 1805.554527 1655.717151 1027.428194 1447.140837 1.084306451 0.834681558 0.879514329 0.870735969 0.8265512 1.130294422 1.247670221 1.144129935 0.709971116 1 10.49898962 -5.01558708 22.52609906 0.986921143 1.194170762 0.389970215 0.128706323 143.114068 206829.4658 0.016174145 0.042866998 9.65E-06 5.01558708 0.207249619 (ac)SETAPLAPTIPAPAEKT(ph)PVKK ddPTM_HeLa_CUDC101_4h_R1 1 SETAPLAPTIPAPAEKTPVKK 21 2 P16402 P16402 HIST1H1D Histone H1.3 1 0 S(0.005)ET(0.003)APLAPT(0.046)IPAPAEKT(0.946)PVKK 65.854 0.00018838 59335000 3781.1 3402.8 5162 3903.1 3647.5 2981.2 2145.6 1665 3151.6 4179.2 TRUE FALSE FALSE 3337.88519 3507.636235 5441.073334 4062.285289 3378.431192 2924.338577 2228.356511 1854.53687 3021.689714 4154.341933 0.803469056 0.844330171 1.309731703 0.97784086 0.813228965 0.703923419 0.536392176 0.446409299 0.727357007 1 12.02040425 -5.013398308 1.554357554 0.935600648 0.457027923 0.589203123 0.148937291 0.235057311 1.023314532 0.022364786 0.110112475 9.70E-06 5.013398308 -0.478572725 ADS(ph)PAGPESSRR ddPTM_HeLa_CUDC101_4h_R1 2 ADSPAGPESSRR 12 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 ADS(1)PAGPESSRR;ADS(1)PAGPESSRR ; 69.92 0.029996 17804700 2196.5 2098.5 2002.95 2295.3 1959.88 1724.19 1543.57 1147.43 2056.65 2229.6 TRUE FALSE FALSE 1939.0296 2163.152298 2111.235536 2388.912255 1815.303557 1691.303948 1603.106012 1278.048793 1971.874017 2216.33824 0.87487982 0.976002786 0.95257822 1.077864476 0.819055289 0.763107326 0.723312887 0.576648803 0.889699045 1 11.11396236 -5.012825306 1.275466948 0.950973042 0.606631002 0.783568916 0.065783904 0.206508977 0.560671645 0.010831144 0.064569753 9.71E-06 5.012825306 -0.34434204 (ac)SQPGQKPAAS(ph)PRPR ddPTM_HeLa_CUDC101_4h_R1 1 SQPGQKPAASPRPR 14 2 P20810-6;P20810-9;P20810-7;P20810-10;P20810-5;F8W7E0;E9PSG1 P20810-6 CAST Calpastatin 1 0 SQPGQKPAAS(1)PRPR 62.68 0.035544 1646100 606.88 442.19 480.77 559.69 622.07 509.83 412.49 493.85 585.45 536.54 TRUE FALSE FALSE 535.7424464 455.8133498 506.7618804 582.5165774 576.1811354 500.1058422 428.3998775 550.0678878 561.3175032 533.3486362 1.004488265 0.854625509 0.950151263 1.092187245 1.080308632 0.93767155 0.803226723 1.031347697 1.052440121 1 9.058935084 -5.011214499 24.86026433 0.998658352 0.905577698 0.165596931 0.082301215 591.3838739 1310988.213 0.010959065 0.029982674 9.75E-06 5.011214499 -0.093080654 ATS(ph)PGPTDLETR ddPTM_HeLa_CUDC101_4h_R1 1 ATSPGPTDLETR 12 0 Q5VT06 Q5VT06 CEP350 Centrosome-associated protein 350 1 0 AT(0.02)S(0.98)PGPTDLETR 127.52 0.0020969 10264000 3174.6 2800.1 3060.9 3073.9 3040.7 2673.6 2021.9 1872.1 3262.2 3345.9 TRUE FALSE FALSE 2802.4782 2886.367762 3226.381513 3199.266929 2816.393619 2622.605535 2099.88536 2085.212297 3127.730735 3325.998438 0.84259757 0.867819939 0.970049016 0.961896702 0.846781402 0.788516767 0.631354885 0.626943258 0.940388516 1 11.69957178 -5.011178733 1.54374554 0.92447753 0.608914032 0.857624282 0.047619464 0.15865246 0.679507469 0.009852887 0.048961508 9.75E-06 5.011178733 -0.315563498 EVLT(ph)PTSTSDNETR ddPTM_HeLa_CUDC101_4h_R1 1 EVLTPTSTSDNETR 14 0 H7C150;H7C183;Q70CQ2-3;Q70CQ2-2;Q70CQ2 H7C150 USP34 Ubiquitin carboxyl-terminal hydrolase 34 1 0 EVLT(0.949)PT(0.034)S(0.013)T(0.003)S(0.001)DNETR 118.52 0.0006647 0 912.16 1012 849.3 715.56 1076.1 794.78 564.93 819.13 1094 886.89 TRUE FALSE FALSE 805.2379875 1043.17852 895.215727 744.7436297 996.7182469 779.6208957 586.7195393 912.3764482 1048.904857 881.6147388 0.913367202 1.183258939 1.01542736 0.844749523 1.130559873 0.884310188 0.665505593 1.034892463 1.189754221 1 9.784004533 -5.010683497 24.85292771 0.981868569 0.83137625 0.178130733 0.141338093 523.5276266 1217888.495 0.016429625 0.04518475 9.76E-06 5.010683497 -0.150492319 SPS(ph)FGAGEGLLR ddPTM_HeLa_CUDC101_4h_R1 1 SPSFGAGEGLLR 12 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 S(0.082)PS(0.918)FGAGEGLLR 122.52 0.0029491 43163000 675.26 762.45 543.74 561.63 529.3 688.84 762.3 548.41 461.81 636.25 TRUE FALSE FALSE 596.1070464 785.9401808 573.1362291 584.535699 490.2545935 675.7015247 791.7021664 610.8387777 442.7739963 632.4655567 0.942513059 1.242660841 0.906193583 0.924217442 0.775148288 1.068360984 1.251771196 0.965805602 0.700076062 1 9.304843104 -5.010655396 24.65478585 0.970860678 1.121607836 0.166120325 0.153208983 483.783486 1119403.849 0.016975637 0.046714251 9.76E-06 5.010655396 0.150747158 ILIVTQT(ph)PHYMR ddPTM_HeLa_CUDC101_4h_R1 3 ILIVTQTPHYMR 12 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 ILIVT(0.037)QT(0.945)PHY(0.018)MR;ILIVT(0.011)QT(0.989)PHYMR;ILIVT(0.004)QT(0.995)PHY(0.001)MR ;; 133.04 0.0070831 128623000 5848.8 4564.74 4705.93 4229.79 3981.29 5604.7 5708.8 5261 4427.37 5180.47 TRUE FALSE FALSE 5163.21253 4705.374229 4960.34681 4402.299119 3687.598169 5497.799686 5928.990328 5859.890974 4244.871935 5149.656334 1.002632447 0.913725873 0.963238416 0.85487241 0.716086265 1.067605162 1.151337088 1.137918842 0.824301984 1 12.33026044 -5.007830822 24.62293633 0.961234835 1.135838829 0.449806054 0.097920137 244.9808196 770320.0219 0.013833633 0.039054525 9.82E-06 5.007830822 0.174603994 SDDY(ph)MPMSPASVSAPK ddPTM_HeLa_CUDC101_4h_R1 1 SDDYMPMSPASVSAPK 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(0.04)DDY(0.96)MPMSPASVSAPK 122.39 0.0031532 14078000 6805.2 6383.5 6358.4 6001.6 6683.2 5068 4539.8 3683.9 6132.9 5719.1 TRUE FALSE FALSE 6007.504772 6580.168069 6702.154337 6246.371189 6190.193651 4971.336344 4714.901607 4103.260285 5880.099266 5685.082539 1.056713729 1.157444597 1.178901853 1.098730079 1.08884851 0.8744528 0.829346201 0.72175914 1.034303236 1 12.47296558 -5.006579964 2.226133168 1.058345796 0.764708709 0.8129474 0.061312022 0.128357221 1.23429343 0.010850967 0.041202973 9.85E-06 5.006579964 -0.293637087 SEPIS(ph)PPRDR ddPTM_HeLa_CUDC101_4h_R1 1 SEPISPPRDR 10 1 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 S(0.019)EPIS(0.981)PPRDR 70.68 0.035807 111300000 3156.4 3772.2 3964.4 3433.1 3953.6 3428.3 3021.3 2977.4 3823.1 3964.7 TRUE FALSE FALSE 2786.411577 3888.417011 4178.727456 3573.116657 3661.950805 3362.910889 3137.832553 3316.335181 3665.5102 3941.117788 0.707010479 0.986627962 1.060289918 0.906625188 0.929165532 0.853288602 0.796178323 0.841470709 0.930068675 1 11.94438915 -5.00631331 7.014254616 0.890969294 0.819909568 0.109553114 0.093708191 0.345017506 102.5706596 0.018099899 0.050884179 9.86E-06 5.00631331 -0.071059726 S(ph)PLTGYVR ddPTM_HeLa_CUDC101_4h_R1 2 SPLTGYVR 8 0 H0YNS8;H0YKM5;Q9NP66 H0YNS8 HMG20A High mobility group protein 20A 1 0 S(0.998)PLT(0.002)GYVR;S(1)PLTGYVR ; 98.044 0.020634 82927000 938.49 619.96 592.15 618.33 789.29 632.48 488.53 558.63 779.81 568.05 TRUE FALSE FALSE 828.4816249 639.0602328 624.1634202 643.5481701 731.0656492 620.4164978 507.3727657 622.2221811 747.6659017 564.6712133 1.467192953 1.131738643 1.105357251 1.13968652 1.294674904 1.098721669 0.898527769 1.101919429 1.32407299 1 9.141267275 -5.005535042 7.753499502 1.20738715 0.999224082 0.292002722 0.1315891 0.152041409 74.22639846 0.025345282 0.071128839 9.87E-06 5.005535042 -0.208163068 APSQVSISAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 APSQVSISASPR 12 0 A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-4;Q8IVL1-8;Q8IVL1-9;Q8IVL1-10;Q8IVL1-13;Q8IVL1-12;Q8IVL1-11;Q8IVL1-3;Q8IVL1-2;Q8IVL1;Q8IVL1-5;Q8IVL1-6;Q8IVL1-7 A0A0A0MTL4 NAV2 Neuron navigator 2 1 0 APSQVSIS(0.001)AS(0.999)PR;APSQVSISAS(1)PR ; 143.58 0.0011239 64079000 2511.9 1995.51 2090.97 2079.6 2618 1928.74 1611.28 1648.06 2135.71 1826.41 TRUE FALSE FALSE 2217.45889 2056.989298 2204.014163 2164.415077 2424.875356 1891.952498 1673.427609 1835.668489 2047.67513 1815.546432 1.221372723 1.132986335 1.21396739 1.192156278 1.335617373 1.042084336 0.921721185 1.011083196 1.127856106 1 10.82618811 -5.005383587 24.48942824 1.139364867 0.970277266 0.458857739 0.087869974 178.3956017 811525.588 0.015821231 0.04550328 9.88E-06 5.005383587 -0.169087601 TEEGPTLS(ph)YGR ddPTM_HeLa_CUDC101_4h_R1 2 TEEGPTLSYGR 11 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 TEEGPT(0.033)LS(0.967)YGR;T(0.095)EEGPT(0.034)LS(0.869)Y(0.002)GR ; 93.345 0.020259 11067200 2533.04 2319.04 2549.76 2610.03 3124.3 2395.1 2160.32 2006.56 2769.75 2534 TRUE FALSE FALSE 2236.120891 2390.486874 2687.607738 2716.478305 2893.826613 2349.417458 2243.644266 2234.97868 2655.579733 2518.927655 0.887727318 0.949009738 1.066965037 1.078426488 1.148832761 0.932705413 0.890714055 0.887273866 1.0542501 1 11.29859397 -5.003641366 24.31779926 0.979346907 0.894672839 0.220029412 0.078511848 170.6137042 1139444.424 0.012885145 0.037474773 9.92E-06 5.003641366 -0.084674068 DEDEGIPS(ph)ENEEEKK ddPTM_HeLa_CUDC101_4h_R1 2 DEDEGIPSENEEEKK 15 1 Q12802-4;Q12802;Q12802-2;A0A087WTD7;A8MYJ1 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 DEDEGIPS(1)ENEEEKK;DEDEGIPS(1)ENEEEKK ; 68.525 0.022488 54717000 8376.2 6648.8 6014 6265 5430.9 6931 6803.9 6319.4 8303.3 6020.8 TRUE FALSE FALSE 7394.354533 6853.641647 6339.135031 6520.51378 5030.273327 6798.802723 7066.328702 7038.774952 7961.03446 5984.988014 1.235483599 1.145138742 1.059172553 1.089478168 0.840481771 1.135975996 1.180675498 1.176071687 1.330167152 1 12.54713264 -5.003240398 24.88979972 1.090958629 1.173361679 0.0569471 0.123745376 272.3723879 2092193.938 0.016830309 0.049053471 9.93E-06 5.003240398 0.08240305 SASNVPSGKST(ph)DEEEEAQTPQAPR ddPTM_HeLa_CUDC101_4h_R1 1 SASNVPSGKSTDEEEEAQTPQAPR 24 1 Q9P2K3;Q9P2K3-3 Q9P2K3 RCOR3 REST corepressor 3 1 0 SASNVPS(0.026)GKS(0.144)T(0.83)DEEEEAQTPQAPR 116.94 5.67E-07 0 925.22 1014 1027.5 934.32 945.87 965.58 872.75 938.88 924.19 1013.5 TRUE FALSE FALSE 816.7671141 1045.240138 1083.049758 972.4256081 876.0950545 947.1631703 906.4122599 1045.758304 886.094497 1007.471657 0.810709769 1.037488381 1.075017595 0.965213861 0.869597719 0.940138776 0.899690084 1.038002704 0.879523003 1 9.976523537 -5.00318992 0.001736902 0.136100319 1.742683281 0 0.082970886 2413507.107 865.9048222 396712.9116 404245.6071 9.93E-06 5.00318992 1.606582962 SGAVQGAGSLGPGS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 2 SGAVQGAGSLGPGSPVR 17 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 SGAVQGAGSLGPGS(1)PVR;SGAVQGAGSLGPGS(1)PVR ; 226.14 5.65E-33 245240000 4203.9 4246.3 4496.5 3859.11 5078.7 4129.9 3689.4 3593.48 4770.6 4490.8 TRUE FALSE FALSE 3711.125215 4377.12347 4739.594391 4016.501186 4704.054419 4051.129038 3831.701394 4002.547238 4573.953849 4464.088522 0.831328769 0.980518968 1.061716041 0.899736008 1.053754735 0.90749299 0.858339026 0.896610186 1.02461092 1 12.12414992 -5.003136084 24.68504391 0.941746551 0.878834929 0.13729358 0.073071742 215.2171347 1694108.099 0.011720484 0.034194504 9.93E-06 5.003136084 -0.062911622 TEAELSQDLET(ph)SPTAKPQIK ddPTM_HeLa_CUDC101_4h_R1 2 TEAELSQDLETSPTAKPQIK 20 1 Q5VT06;H0Y7F7 Q5VT06 CEP350 Centrosome-associated protein 350 1 0 TEAELS(0.003)QDLET(0.497)S(0.497)PT(0.003)AKPQIK;TEAELS(0.002)QDLET(0.591)S(0.407)PTAKPQIK ; 95.195 0.0014538 35245000 7820 6999 6974.6 6616.4 7753.6 7016.5 5872.2 6579.9 7740.9 7434.3 TRUE FALSE FALSE 6903.351454 7214.630894 7351.667973 6886.245391 7181.632375 6882.671953 6098.692721 7328.929219 7421.816826 7390.080453 0.934137524 0.976258776 0.994802157 0.931822791 0.971793531 0.931339245 0.825253901 0.991725228 1.004294456 1 12.85137436 -5.003011819 24.99828073 0.967491181 0.90094132 0.259395603 0.044280445 113.568966 942665.3355 0.005841574 0.017067138 9.93E-06 5.003011819 -0.066549862 VMPTKS(ph)PPPPGGGNLGMNSR ddPTM_HeLa_CUDC101_4h_R1 1 VMPTKSPPPPGGGNLGMNSR 20 1 Q02078-3;Q02078-5;Q02078;Q02078-8;Q02078-7;Q02078-4;Q02078-6;Q02078-2 Q02078-3;Q02078-8 MEF2A Myocyte-specific enhancer factor 2A 1 0 VMPT(0.176)KS(0.824)PPPPGGGNLGMNSR 77.027 0.0029808 30016000 2463 1987.5 2025.4 1941.9 2084 1722.8 1309.6 1162 2033.7 2006.9 TRUE FALSE FALSE 2174.290874 2048.732519 2134.899251 2021.099076 1930.267472 1689.94046 1360.111711 1294.277383 1949.870025 1994.96287 1.089890397 1.026952707 1.070144855 1.013101099 0.967570626 0.847103716 0.681772945 0.648772668 0.97739665 1 10.96214618 -5.002364119 1.295471542 1.043789087 0.621336111 0.951689258 0.032422475 0.081654097 0.229427803 0.005318464 0.031707306 9.95E-06 5.002364119 -0.422452976 RS(ph)PVPAQIAITVPK ddPTM_HeLa_CUDC101_4h_R1 3 RSPVPAQIAITVPK 14 1 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK ;; 163.9 5.43E-05 937540000 25590.5 22188.7 22502.2 21695.2 24428.3 21304 19853.7 17468.7 23670.1 23092 TRUE FALSE FALSE 22590.82038 22872.30755 23718.737 22580.02403 22626.27298 20897.66169 20619.46386 19457.2662 22694.40846 22954.64776 0.984150165 0.996412918 1.033286908 0.983679831 0.985694628 0.910389125 0.89826967 0.847639502 0.988662893 1 14.48649867 -5.001549075 1.388342316 0.996011756 0.856311022 0.912461921 0.016134979 0.103121923 0.342767869 0.002447197 0.013630406 9.96E-06 5.001549075 -0.139700734 VAS(ph)DTEEADRTSSK ddPTM_HeLa_CUDC101_4h_R1 1 VASDTEEADRTSSK 14 1 A0A590UJ84;B1AKN3;Q9P2R6-2;Q9P2R6;D6RA28 A0A590UJ84 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 VAS(0.982)DT(0.018)EEADRTSSK 68.329 0.027964 47338000 1875.3 1690.8 1998.4 2196.5 2351 1908.9 1553.1 1803.4 1906.9 2162 TRUE FALSE FALSE 1655.480177 1742.891544 2106.439549 2286.082764 2177.571414 1872.490913 1613.003587 2008.691766 1828.296775 2149.140328 0.770298782 0.810971495 0.980131228 1.063719635 1.013229051 0.871274383 0.750534326 0.934648957 0.850710748 1 11.06954397 -5.001541459 24.99859345 0.91127515 0.834669817 0.097384455 0.098450492 138.4353054 2245242.039 0.016864549 0.049588141 9.96E-06 5.001541459 -0.076605334 SSGNSSSSGSGSGST(ph)SAGSSSPGAR ddPTM_HeLa_CUDC101_4h_R1 1 SSGNSSSSGSGSGSTSAGSSSPGAR 25 0 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNSS(0.022)S(0.189)S(0.189)GS(0.189)GS(0.013)GS(0.065)T(0.299)S(0.033)AGSSSPGAR 280.93 9.93E-109 5058900 960.31 908.31 805.44 871.32 924.24 1032.2 1135.5 872.22 966.04 1072.5 TRUE FALSE FALSE 847.7439175 936.2939545 848.9845227 906.8561958 856.0606565 1012.512505 1179.296615 971.5099992 926.2194223 1066.120722 0.795166907 0.878225078 0.79633057 0.850613047 0.802967843 0.94971656 1.106156733 0.911257026 0.868775367 1 10.0581551 -5.001286433 24.95752816 0.881023462 1.013514343 0.389662685 0.074104076 49.99871854 970093.5934 0.013111132 0.038589055 9.97E-06 5.001286433 0.132490881 ANVSS(ph)PHREFPPATAR ddPTM_HeLa_CUDC101_4h_R1 1 ANVSSPHREFPPATAR 16 1 H0Y555;Q5QPM9;Q5QPM7;Q92530 H0Y555 PSMF1 Proteasome inhibitor PI31 subunit 1 0 ANVS(0.277)S(0.714)PHREFPPAT(0.009)AR 58.29 0.036155 28665000 497.36 405.84 593.75 512.92 666.52 637.63 682.12 702.37 630.72 491.26 TRUE FALSE FALSE 439.0602147 418.3434494 625.849921 533.8390946 617.3521475 625.4682701 708.4295969 782.3249617 604.7214546 488.3379637 0.899090891 0.856667883 1.281591782 1.093175494 1.264190363 1.280810252 1.450695317 1.602015448 1.238325708 1 8.931736128 -4.999963017 0.530016076 0.944552998 1.749614815 0.643364633 0.133930892 0.625461824 0.18850904 0.021767384 0.269401693 1.00E-05 4.999963017 0.805061817 SSGSS(ph)PAMETR ddPTM_HeLa_CUDC101_4h_R1 1 SSGSSPAMETR 11 0 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 SS(0.001)GS(0.023)S(0.977)PAMETR 151.13 0.00058181 6394400 3074.1 3131.3 2902.4 3374.8 2978.8 2796.9 2256.1 2001.4 3115.8 3440.2 TRUE FALSE FALSE 2713.758658 3227.771641 3059.312523 3512.438931 2759.059859 2743.553792 2343.118533 2229.231286 2987.365405 3419.737537 0.793557584 0.943865313 0.894604481 1.027107751 0.806804566 0.80227028 0.685174961 0.65187204 0.873565697 1 11.73966989 -4.999591502 1.47781195 0.909643988 0.648681232 0.676113739 0.067080094 0.269464376 1.039153746 0.012968242 0.068209963 1.00E-05 4.999591502 -0.260962756 RLS(ph)LQPR ddPTM_HeLa_CUDC101_4h_R1 1 RLSLQPR 7 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 RLS(1)LQPR 68.016 0.035054 3793800 731.77 665.3 745.08 517.31 578.7 706.47 785.68 618.05 630.96 624 TRUE FALSE FALSE 645.9930299 685.7971044 785.3612785 538.4081378 536.0104539 692.9952618 815.9839408 688.4063138 604.9515617 620.2884202 1.04143977 1.105610039 1.266122747 0.867996436 0.864131002 1.117214572 1.315491172 1.109816484 0.975274634 1 9.276795382 -4.999482414 24.98193404 1.023677246 1.213578642 0.307595027 0.118133824 16.23183788 783253.0611 0.016145719 0.04780443 1.00E-05 4.999482414 0.189901397 AVVQS(ph)PQVTEVL ddPTM_HeLa_CUDC101_4h_R1 4 AVVQSPQVTEVL 12 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 AVVQS(1)PQVTEVL;AVVQS(1)PQVTEVL;AVVQS(0.992)PQVT(0.008)EVL;AVVQS(0.992)PQVT(0.008)EVL ;;; 110.29 0.0056797 11682500 10165.3 9055.9 7920.6 7929.1 9550.9 8401.8 6871.5 3474.86 9577.1 8465 TRUE FALSE FALSE 8973.738944 9334.901545 8348.811595 8252.48297 8846.349135 8241.549663 7136.536057 3870.424017 9182.327884 8414.649804 1.066442354 1.109363047 0.992175764 0.980728035 1.051303303 0.979428717 0.848108504 0.459962578 1.091231138 1 13.03868752 -4.100838548 1.39945914 1.033005834 0.042373855 0.948636341 0.040866824 0.273735944 0.356229428 0.006007192 0.421642356 7.93E-05 4.100838548 -0.990631979 down RVAAPQDGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 RVAAPQDGSPR 11 1 Q9HD15 Q9HD15 SRA1 Steroid receptor RNA activator 1 1 0 RVAAPQDGS(1)PR;RVAAPQDGS(1)PR ; 110.22 0.0036955 15700800 3992 3119.1 3995.9 3747.5 3968.8 3424.2 3355.5 1289.48 4411.2 3861.8 TRUE FALSE FALSE 3524.063811 3215.195774 4211.930441 3900.339248 3676.029531 3358.88909 3484.922759 1436.269191 4229.368469 3838.829842 0.918004693 0.83754579 1.097191231 1.016022957 0.957591163 0.874977331 0.907808604 0.374142447 1.101733769 1 11.9064509 -4.096529821 2.064453678 0.961432692 1.42E-11 0.822650786 0.082853662 0.350828353 1.089679883 0.010165828 0.732965826 8.01E-05 4.096529821 -0.961432692 down SMFGS(ph)LDPPNMPQALPK ddPTM_HeLa_CUDC101_4h_R1 1 SMFGSLDPPNMPQALPK 17 0 Q99570 Q99570 PIK3R4 Phosphoinositide 3-kinase regulatory subunit 4 1 0 S(0.008)MFGS(0.992)LDPPNMPQALPK 118.5 0.00031838 7858400 2925.5 2288.1 1778.3 2221.3 2771.4 2215 1681.7 1988 2182.8 2208.5 TRUE FALSE FALSE 2582.577325 2358.593649 1874.440277 2311.894215 2566.959343 2172.752565 1746.563732 2214.305884 2092.82406 2195.363744 1.17637787 1.0743521 0.853817634 1.053080257 1.169263795 0.989700487 0.795569179 1.008628247 0.953292622 1 11.10024428 -4.997957646 24.83418169 1.069751063 0.899732693 0.178428593 0.104563115 57.06631207 693853.6931 0.014989212 0.044526118 1.00E-05 4.997957646 -0.170018369 QVETEEAGVVTT(ph)ATASVNLKVSPK ddPTM_HeLa_CUDC101_4h_R1 1 QVETEEAGVVTTATASVNLKVSPK 24 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QVETEEAGVVT(0.142)T(0.805)AT(0.014)AS(0.025)VNLKVS(0.014)PK 102.66 7.63E-06 0 1112.6 871.51 878.64 705.21 1080 800.98 566.34 662.92 768.32 847.52 TRUE FALSE FALSE 982.1827146 898.3601901 926.1419361 733.971512 1000.330552 785.702641 588.1839235 738.3841332 736.6495244 842.4789133 1.165824686 1.066329585 1.099305777 0.871204609 1.187365685 0.932608079 0.698158629 0.876442272 0.874383338 1 9.718496767 -4.996601911 5.734297183 1.070934455 0.790919725 0.427610875 0.110916918 0.07835192 9.557960283 0.01342777 0.039029576 1.01E-05 4.996601911 -0.28001473 SRDS(ph)GDENEPIQER ddPTM_HeLa_CUDC101_4h_R1 1 SRDSGDENEPIQER 14 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 1 0 S(0.008)RDS(0.992)GDENEPIQER 193.31 1.33E-15 44700000 1822.5 1430.9 1451.8 1404.5 1728.2 1417.8 1124 1253 1661.2 1317.9 TRUE FALSE FALSE 1608.869313 1474.984333 1530.288699 1461.781581 1600.714129 1390.757827 1167.353057 1395.636455 1592.724633 1310.061072 1.22808726 1.12588975 1.168104856 1.115811783 1.221862219 1.061597705 0.891067662 1.065321675 1.215763652 1 10.35541835 -4.994636087 23.98372065 1.123960053 0.977729082 0.418741795 0.078372731 85.14002479 380669.1547 0.013259871 0.039568726 1.01E-05 4.994636087 -0.146230971 VLISVGS(ph)YK ddPTM_HeLa_CUDC101_4h_R1 2 VLISVGSYK 9 0 Q8TEV9-2;Q8TEV9 Q8TEV9-2 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 1 0 VLIS(0.001)VGS(0.999)YK;VLIS(0.005)VGS(0.995)YK ; 144.17 0.0013302 52085000 10012.5 7231.1 7232.4 7523.1 8408.2 7408.9 6193 6252.9 6414.2 6764.6 TRUE FALSE FALSE 8838.849928 7453.88162 7623.405421 7829.924536 7787.943837 7267.587577 6431.866085 6964.704861 6149.803961 6724.363858 1.314451465 1.10848874 1.133699125 1.164411192 1.158168118 1.080784403 0.956501793 1.03574182 0.914555502 1 12.71518208 -4.994510219 3.713238037 1.148889211 0.996958194 0.100651829 0.104934135 0.252272713 7.625511857 0.016284875 0.050801205 1.01E-05 4.994510219 -0.151931018 LFQLGPPS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 LFQLGPPSPVK 11 0 Q9NZH5-2;Q9NZH5;O95997 Q9NZH5-2 PTTG2;PTTG1 Securin-2;Securin 1 0 LFQLGPPS(1)PVK;LFQLGPPS(1)PVK ; 90.861 0.023713 490590000 9296.5 9322.2 8049.3 8229.5 8516.7 6646.1 5466.7 4400.7 7689.7 9715.6 TRUE FALSE FALSE 8206.778363 9609.405932 8484.469506 8565.134581 7888.440009 6519.336716 5677.55245 4901.6579 7372.727311 9657.811179 0.84975552 0.994987969 0.87850853 0.886860845 0.816793771 0.67503253 0.587871552 0.507533002 0.763395264 1 13.23748054 -4.994308806 0.825609351 0.933727737 0.444117431 0.807485824 0.06823095 0.26127728 0.233269209 0.009693334 0.092652144 1.01E-05 4.994308806 -0.489610306 YFPSSCLDLNSPT(ph)SPTPTR ddPTM_HeLa_CUDC101_4h_R1 2 YFPSSCLDLNSPTSPTPTR 19 0 A0A096LNR9;A0A1B0GUM4;A0A669KBC2;O76039;O76039-1 A0A096LNR9 CDKL5 Cyclin-dependent kinase-like 5 1 0 YFPSSCLDLNS(0.016)PT(0.949)S(0.034)PT(0.001)PTR;YFPSSCLDLNS(0.099)PT(0.621)S(0.268)PT(0.011)PT(0.002)R ; 154.31 0.0001436 18878500 2317.2 1897.7 1991.25 1943.03 2171.3 1847.01 1438.59 1687.63 2019.82 1677.78 TRUE FALSE FALSE 2045.581329 1956.165888 2098.902998 2022.275162 2011.127525 1811.781362 1494.076898 1879.742978 1936.562165 1667.80049 1.226514407 1.172901615 1.258485659 1.212540213 1.205856178 1.086329793 0.895836707 1.127079041 1.161147377 1 10.703731 -4.993000853 24.68242926 1.140050443 1.006364175 0.310704763 0.088890318 187.2564179 660340.7014 0.015799374 0.047237348 1.02E-05 4.993000853 -0.133686268 NS(ph)PQALR ddPTM_HeLa_CUDC101_4h_R1 2 NSPQALR 7 0 Q7L7X3;Q7L7X3-3 Q7L7X3 TAOK1 Serine/threonine-protein kinase TAO1 1 0 NS(1)PQALR;NS(1)PQALR ; 93.667 0.029242 125168000 9419.8 4842.5 7495 8023.7 5724.5 5504.2 5496.3 3205.7 6607.5 9937.4 TRUE FALSE FALSE 8315.625323 4991.691685 7900.202371 8350.941167 5302.21504 5399.216556 5708.294132 3570.62393 6335.136053 9878.291903 0.841808018 0.505319314 0.79975389 0.845383114 0.536754238 0.546573903 0.577862467 0.361461674 0.641318977 1 13.27004589 -4.991428956 0.16645574 1.11527234 2.60E-16 0.281020991 0.158731658 5.754542884 0.224506326 0.295228662 1.469514083 1.02E-05 4.991428956 -1.11527234 PELS(ph)GGGDS(ph)APS(ph)VWGLEPDQNGARS(ph)LFK ddPTM_HeLa_CUDC101_4h_R1 1 PELSGGGDSAPSVWGLEPDQNGARSLFK 28 1 Q9BV73-2;Q9BV73;H7C0D6 Q9BV73-2 CEP250 Centrosome-associated protein CEP250 4 0 PELS(1)GGGDS(1)APS(1)VWGLEPDQNGARS(1)LFK 48.867 0.010696 1841000 596.22 567.26 443.27 575.13 620.29 530.53 389.38 508.46 558.9 556.5 TRUE FALSE FALSE 526.3319954 584.7366082 467.234517 598.5862873 574.5324425 520.4110242 404.398517 566.3410311 535.8619054 553.1899133 0.95144901 1.05702688 0.844618649 1.08206291 1.038580836 0.940745686 0.731030171 1.023773242 0.968676204 1 9.111631041 -4.990884949 24.99890505 0.984370096 0.867023245 0.198877815 0.090515873 204.6459956 561251.1256 0.011181226 0.033476859 1.02E-05 4.990884949 -0.117346851 DLS(ph)SEDTR ddPTM_HeLa_CUDC101_4h_R1 1 DLSSEDTR 8 0 F8VS03;F8VYN3;P18846 F8VS03 ATF1 Cyclic AMP-dependent transcription factor ATF-1 1 0 DLS(0.903)S(0.097)EDTR 87.806 0.032225 5157000 3234.2 2344.8 2662.7 2728.9 2932.3 3096.5 3131.1 2792.2 2825.2 3184.9 TRUE FALSE FALSE 2855.091979 2417.040509 2806.653616 2840.196337 2715.990071 3037.439422 3251.867576 3110.052762 2708.74406 3165.956073 0.901810358 0.763447266 0.886510599 0.897105415 0.85787358 0.959406685 1.027136037 0.98234236 0.855584853 1 11.62842552 -4.990716766 8.424029886 0.922437287 1.002185491 0.244718266 0.065808018 0.203676131 112.744457 0.01086865 0.031679678 1.02E-05 4.990716766 0.079748204 EFAPS(ph)DEELDSYRR ddPTM_HeLa_CUDC101_4h_R1 3 EFAPSDEELDSYRR 14 1 I3L0X5;I3L4C3;O75391 I3L0X5 SPAG7 Sperm-associated antigen 7 1 0 EFAPS(1)DEELDSYRR;EFAPS(1)DEELDSYRR;EFAPS(1)DEELDSYRR ;; 125.39 0.00060632 19829700 5241 4966.8 4563.3 4399.4 5472.5 5006.1 4996.3 4662.7 5333.8 4931.7 TRUE FALSE FALSE 4626.657925 5119.821221 4810.005801 4578.826548 5068.804578 4910.616983 5189.008965 5193.482921 5113.938506 4902.366029 0.943760196 1.044357192 0.981160071 0.934003402 1.033950657 1.001683056 1.058470325 1.059382937 1.043157218 1 12.25926249 -4.988688519 1.132314777 0.977499502 1.068785117 0.210210591 0.0385389 0.475046215 0.948378653 0.005379258 0.037686781 1.03E-05 4.988688519 0.091285615 IQIVTAVDAS(ph)GSPK ddPTM_HeLa_CUDC101_4h_R1 1 IQIVTAVDASGSPK 14 0 C9JMI6;C9JKS0;P49116;P49116-2 C9JMI6 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 IQIVT(0.001)AVDAS(0.647)GS(0.352)PK 95.073 0.010372 18622000 2285.2 1982 2483.7 2206.8 2073.1 2118.4 1711.2 1645.7 2496.7 2200.4 TRUE FALSE FALSE 2017.33232 2043.063071 2617.976335 2296.802843 1920.171543 2077.995049 1777.201557 1833.039836 2393.784969 2187.311923 0.922288357 0.934051997 1.196892088 1.050057296 0.877868183 0.950022275 0.812504855 0.83803312 1.094395794 1 11.09494326 -4.988172835 1.556477675 0.981905796 0.81924705 0.371437194 0.090005959 0.415808947 1.806951604 0.013210077 0.067314091 1.03E-05 4.988172835 -0.162658746 (ac)S(ph)YGRPPPDVEGMTSLK ddPTM_HeLa_CUDC101_4h_R1 6 SYGRPPPDVEGMTSLK 16 1 J3QL05;J3KP15;Q01130-2;Q01130 J3QL05 SRSF2 Serine/arginine-rich splicing factor 2 1 0 S(0.54)Y(0.46)GRPPPDVEGMTSLK;S(0.573)Y(0.427)GRPPPDVEGMTSLK;S(0.557)Y(0.442)GRPPPDVEGMTSLK;S(0.548)Y(0.452)GRPPPDVEGMTSLK;S(0.55)Y(0.449)GRPPPDVEGMTSLK;S(0.564)Y(0.436)GRPPPDVEGMTSLK ;;;;; 82.85 0.00042843 139401800 12258 10223.4 10107.9 10670 13344.1 13684.2 14438.3 13306.3 14102.8 14360.4 TRUE FALSE FALSE 10821.13582 10538.37084 10654.36365 11105.16872 12359.73233 13423.19668 14995.19007 14821.03541 13521.47661 14274.9837 0.758048909 0.738240481 0.746366081 0.777946158 0.865831624 0.940330088 1.050452342 1.038252352 0.947214855 1 13.80120148 -4.987300143 2.454088649 0.851721414 1.047233387 0.500385823 0.083545267 0.271815023 3.220741587 0.016509237 0.060634888 1.03E-05 4.987300143 0.195511973 EMLQQS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 EMLQQSK 7 0 P07900;P07900-2;P08238;Q58FF7 P07900;P08238 HSP90AA1;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 1 0 EMLQQS(1)K 91.855 0.031314 23971000 2870.4 2146.1 2344.9 2443.2 2099.8 2171.9 2091.2 1611.8 2867.6 2501.9 TRUE FALSE FALSE 2533.936063 2212.218797 2471.672387 2542.844256 1944.901937 2130.474626 2171.858285 1795.280797 2749.396314 2487.018588 1.018864948 0.889506338 0.993829479 1.022446824 0.782021472 0.856637999 0.873277866 0.721860627 1.105498901 1 11.28020157 -4.987208015 0.478639893 1.010617384 0.686702434 0.644747046 0.068360943 1.121677197 0.266059247 0.014235488 0.180798748 1.03E-05 4.987208015 -0.32391495 S(ph)QDVELWEGEVVK ddPTM_HeLa_CUDC101_4h_R1 1 SQDVELWEGEVVK 13 0 Q9UHB6-4;Q9UHB6-5;Q9UHB6;F8VQE1;Q9UHB6-2;F8VS07;Q9UHB6-3 Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 1 0 S(1)QDVELWEGEVVK 88.108 0.020497 4663200 1077 1032.7 863.63 905.35 869.45 875.28 685.71 833.77 917.4 775.07 TRUE FALSE FALSE 950.7556926 1064.516263 910.3204501 942.2740863 805.3124057 858.5854923 712.1580644 928.6830066 879.5843837 770.4598492 1.234010693 1.381663514 1.181528734 1.223002194 1.045236045 1.114380578 0.924328588 1.205361976 1.141635589 1 9.589575966 -4.985956105 24.77893377 1.141709178 1.053472617 0.07832238 0.119761815 498.8301618 880117.5178 0.019539251 0.058578642 1.03E-05 4.985956105 -0.088236562 SDS(ph)DYDLSPK ddPTM_HeLa_CUDC101_4h_R1 3 SDSDYDLSPK 10 0 Q08499-6;Q08499;Q08499-10;A0A087WSZ7;Q08499-11;Q08499-9;A0A1B0GW84;Q08499-2;Q08499-12;Q08499-7;A0A1W2PQN6;E9PMG3;Q07343-3;Q07343 Q08499-6 PDE4D;PDE4B "cAMP-specific 3,5-cyclic phosphodiesterase 4D;cAMP-specific 3,5-cyclic phosphodiesterase 4B" 1 0 S(0.001)DS(0.999)DYDLSPK;S(0.018)DS(0.982)DYDLSPK;S(0.002)DS(0.997)DYDLS(0.001)PK ;; 208.17 6.69E-24 523150000 12668.3 11371.2 10818.4 10173.8 12057.6 14141.2 14660.3 14577.3 11845.4 11815.2 TRUE FALSE FALSE 11183.34108 11721.53319 11403.27543 10588.73154 11168.13487 13871.48017 15225.75268 16236.72091 11357.1276 11744.92266 0.952185161 0.998008546 0.97091107 0.901558217 0.950890456 1.181061857 1.296368918 1.382445962 0.966981897 1 13.51974959 -4.983073912 2.184203945 0.970345201 1.35471126 0.955005168 0.033348216 0.049941947 0.461821538 0.005384975 0.02125012 1.04E-05 4.983073912 0.384366059 TSS(ph)EASMDAAYLDK ddPTM_HeLa_CUDC101_4h_R1 1 TSSEASMDAAYLDK 14 0 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 1 0 T(0.203)S(0.138)S(0.659)EASMDAAYLDK 116.79 0.0019318 22974000 5032.3 4221 3944 4275.9 5020.3 4844.9 5626.3 4196.3 4580.5 4835.2 TRUE FALSE FALSE 4442.421422 4351.044007 4157.22457 4450.289684 4649.962471 4752.491605 5843.308276 4673.98983 4391.689851 4806.440015 0.924264405 0.905252951 0.864928004 0.92590143 0.967444191 0.988775807 1.215724789 0.972443184 0.913709489 1 12.23075301 -4.982106969 24.48078213 0.949622985 1.096125694 0.475297218 0.06640349 125.460316 171648.6995 0.009139466 0.027410219 1.04E-05 4.982106969 0.146502709 SIDAVIATASAPPSSS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 2 SIDAVIATASAPPSSSPGR 19 0 Q9NR48;Q9NR48-2 Q9NR48 ASH1L Histone-lysine N-methyltransferase ASH1L 1 0 SIDAVIATAS(0.002)APPS(0.212)S(0.212)S(0.575)PGR;SIDAVIATAS(0.001)APPS(0.036)S(0.204)S(0.759)PGR ; 245.66 2.66E-56 21468300 3055.9 3129.3 2624.3 2918.2 2815.9 2744.7 2332.3 2169.07 2578.4 2867.3 TRUE FALSE FALSE 2697.692034 3225.710024 2766.177596 3037.21681 2608.176667 2692.34942 2422.257592 2415.988161 2472.117261 2850.245172 0.946477188 1.131730721 0.970505142 1.06559844 0.915070988 0.944602747 0.849841837 0.847642226 0.867334952 1 11.47687031 -4.979460075 1.449852661 0.991240359 0.837909185 0.384087199 0.069206287 0.319928801 1.172561258 0.008665923 0.047822438 1.05E-05 4.979460075 -0.153331174 LLHPS(ph)PDLVSQEATLSEAR ddPTM_HeLa_CUDC101_4h_R1 4 LLHPSPDLVSQEATLSEAR 19 0 A0A087WU05;A0A087WY48;Q8IY22-3;Q8IY22-2;Q8IY22 A0A087WU05 CMIP C-Maf-inducing protein 1 0 LLHPS(0.998)PDLVS(0.002)QEATLSEAR;LLHPS(1)PDLVSQEATLSEAR;LLHPS(1)PDLVSQEATLSEAR;LLHPS(0.998)PDLVS(0.002)QEATLSEAR ;;; 169.58 2.01E-07 42820000 8882.6 8069 7022.7 6873.1 9288.7 8172.6 8955.3 7829.4 7682.1 8063.8 TRUE FALSE FALSE 7841.395093 8317.596326 7402.368405 7153.414726 8603.491107 8016.721271 9300.708921 8720.667248 7365.440586 8015.836159 0.978237945 1.037645501 0.923468027 0.892410297 1.073311746 1.00011042 1.160291794 1.087929827 0.918861169 1 12.96863731 -4.978347257 1.824833247 0.984184459 1.124937852 0.495435289 0.056908007 0.223480059 1.395278679 0.007358541 0.033180259 1.05E-05 4.978347257 0.140753393 DVDELPSLQPS(ph)VGSPSRPSSSR ddPTM_HeLa_CUDC101_4h_R1 1 DVDELPSLQPSVGSPSRPSSSR 22 1 O43815-2;O43815 O43815-2 STRN Striatin 1 0 DVDELPSLQPS(0.417)VGS(0.228)PS(0.321)RPS(0.011)S(0.011)S(0.014)R 79.845 0.00064886 34469000 1331 1240.7 1380.1 1151.3 1348.7 1133.3 839.75 848.1 1511.4 1309.3 TRUE FALSE FALSE 1174.982198 1278.924496 1454.712381 1198.25499 1249.209088 1111.684191 872.1394388 944.6442759 1449.099452 1301.512225 0.902782298 0.982645012 1.117709348 0.920663646 0.959813564 0.854148097 0.670097001 0.72580515 1.113396727 1 10.34597315 -4.974779937 2.619530733 0.965799642 0.695101777 0.714446633 0.074232675 0.104042859 1.417722133 0.009186004 0.033093925 1.06E-05 4.974779937 -0.270697866 GRAS(ph)PGGVSTSSSDGK ddPTM_HeLa_CUDC101_4h_R1 4 GRASPGGVSTSSSDGK 16 1 P54259 P54259 ATN1 Atrophin-1 1 0 GRAS(1)PGGVSTSSSDGK;GRAS(1)PGGVSTSSSDGK;GRAS(1)PGGVSTSSSDGK;GRAS(1)PGGVSTSSSDGK ;;; 130.01 0.00027113 296578800 14900.9 12262.9 12153.2 11896.6 11917.6 10028.4 9622.6 7193.6 12758.3 13344.3 TRUE FALSE FALSE 13154.23909 12640.70541 12810.23875 12381.79477 11038.46239 9837.124978 9993.746905 8012.490346 12232.39747 13264.92751 0.991655558 0.952941914 0.965722485 0.933423478 0.832153993 0.741589049 0.75339627 0.604035743 0.922160899 1 13.69532917 -4.974444506 0.590937112 0.999373865 0.539504411 0.920958052 0.035198036 0.217572616 0.083478363 0.0046813 0.058135648 1.06E-05 4.974444506 -0.459869454 RSPT(ph)DSDVSLDSEDSGAK ddPTM_HeLa_CUDC101_4h_R1 3 RSPTDSDVSLDSEDSGAK 18 1 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 RS(0.022)PT(0.906)DS(0.072)DVSLDSEDSGAK;RS(0.038)PT(0.916)DS(0.038)DVS(0.008)LDSEDSGAK;RS(0.005)PT(0.831)DS(0.048)DVS(0.007)LDS(0.109)EDSGAK ;; 226.57 1.21E-32 38707300 9638 7671 7643.8 7613.9 8078.9 7506.9 7079 5938.55 8112.3 8211 TRUE FALSE FALSE 8508.24825 7907.334418 8057.046949 7924.427752 7482.935642 7363.71839 7352.039401 6614.570528 7777.90756 8162.160607 1.042401474 0.968779567 0.987121834 0.970873784 0.916783681 0.902177591 0.900746721 0.810394557 0.952922631 1 12.99473538 -4.973761779 0.518723246 1.020010836 0.779684768 0.760011999 0.030313752 0.565207047 0.15961095 0.005577279 0.071853052 1.06E-05 4.973761779 -0.240326068 ALQEVGSGGTLGLSS(ph)PKS ddPTM_HeLa_CUDC101_4h_R1 2 ALQEVGSGGTLGLSSPKS 18 1 A0A0M3HER3 A0A0M3HER3 1 0 ALQEVGSGGTLGLS(0.046)S(0.951)PKS(0.002);ALQEVGSGGTLGLS(0.036)S(0.963)PKS ; 166.9 6.82E-08 9727500 4630.7 4526.12 4441.87 4797.5 5473.89 4848.8 4042.36 3921.9 5447.6 4916.9 TRUE FALSE FALSE 4087.896366 4665.564392 4682.010928 4993.162787 5070.09204 4756.317219 4198.275179 4368.353243 5223.047622 4887.65406 0.83637187 0.954561091 0.957926005 1.021586783 1.037326287 0.973128859 0.858955059 0.893752543 1.068620561 1 12.25492646 -4.971222592 0.0022008 1.861086907 8.91E-06 0 0.075312588 836460.1644 374.2847487 156348.0701 160176.1168 1.07E-05 4.971222592 -1.861077995 GLS(ph)PAMS(ph)PALQR ddPTM_HeLa_CUDC101_4h_R1 2 GLSPAMSPALQR 12 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 2 0 GLS(1)PAMS(1)PALQR;GLS(1)PAMS(1)PALQR ; 135.04 0.013519 8637700 9285.7 7443.8 7548.8 6755.5 7687.7 6694.6 5806.7 4982.6 7895.8 7073.3 TRUE FALSE FALSE 8197.244322 7673.134655 7956.910962 7031.01849 7120.593687 6566.911659 6030.666364 5549.799044 7570.331782 7031.227697 1.165834002 1.091293724 1.131653149 0.999970246 1.01270987 0.933963732 0.857697492 0.789307257 1.076672824 1 12.7795609 -4.970700945 0.938866626 1.083423027 0.764314201 0.839421192 0.045312027 0.370543102 0.453424548 0.010645366 0.093346657 1.07E-05 4.970700945 -0.319108826 T(ph)GSESS(ph)QTGTSTTSSR ddPTM_HeLa_CUDC101_4h_R1 3 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 T(0.984)GS(0.016)ES(0.011)S(0.59)QT(0.394)GT(0.004)S(0.001)TTSSR;T(0.995)GS(0.005)ES(0.003)S(0.767)QT(0.227)GT(0.001)S(0.001)TTSSR;T(0.828)GS(0.172)ES(0.002)S(0.762)QT(0.235)GT(0.001)STTSSR ;; 190.19 1.24E-10 446127700 17726 13426.6 14222.6 13074.3 15389.6 17876.8 20164.5 18217.4 13900.5 14903.3 TRUE FALSE FALSE 15648.18515 13840.25763 14991.51678 13607.52647 14254.33987 17535.82982 20942.25152 20291.19518 13327.51551 14814.65451 1.056263927 0.934227499 1.011938332 0.918517975 0.962178353 1.183681321 1.413617274 1.369670495 0.899617031 1 13.85473736 -4.970417612 3.10268122 1.007356845 1.391982682 0.897248687 0.056533719 0.051970309 1.020592556 0.007394679 0.024946379 1.07E-05 4.970417612 0.384625837 AAVPSGAS(ph)TGIYEALELR ddPTM_HeLa_CUDC101_4h_R1 3 AAVPSGASTGIYEALELR 18 0 P06733;A0A2R8Y6G6;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8YEG5;A0A2R8Y798;F5H1C3;E5RI09;P09104-2;K7EPM1;K7EKN2;E5RGZ4;F5H0C8;P09104;E5RG95;P13929-3;P13929-2;P13929 P06733;P13929-3 ENO1;ENO2;ENO3 Alpha-enolase;Enolase;Gamma-enolase;Beta-enolase 1 0 AAVPS(0.066)GAS(0.924)T(0.011)GIYEALELR;AAVPS(0.021)GAS(0.934)T(0.044)GIYEALELR;AAVPS(0.001)GAS(0.935)T(0.064)GIYEALELR ;; 143.99 6.42E-06 19264000 2671.6 2533.85 3022.94 2144.47 2986.99 2669.12 2190.29 2401.14 2448.41 2886.47 TRUE FALSE FALSE 2358.439098 2611.914915 3186.36928 2231.930756 2766.645699 2618.210983 2274.770219 2674.476072 2347.485503 2869.301148 0.821955931 0.910296543 1.110503609 0.777865634 0.964222839 0.912490829 0.792795911 0.932100164 0.818138419 1 11.48648368 -4.969109027 24.82619115 0.921467644 0.859996796 0.04046791 0.097350207 432.2566829 347387.398 0.013654816 0.04096381 1.07E-05 4.969109027 -0.061470848 STS(ph)PAGQHHS(ph)PISSR ddPTM_HeLa_CUDC101_4h_R1 1 STSPAGQHHSPISSR 15 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 S(0.1)T(0.12)S(0.78)PAGQHHS(0.846)PIS(0.131)S(0.023)R 88.945 0.039319 26795000 2571 2425.5 2104 1534.1 2702.3 2753.7 3093.7 2763.6 2695.3 2717.2 TRUE FALSE FALSE 2269.631277 2500.22678 2217.748604 1596.667229 2502.956713 2701.17776 3213.025045 3078.197053 2584.198593 2701.037974 0.840281144 0.925654065 0.821072723 0.591130982 0.926664763 1.000051753 1.189551971 1.139634868 0.956742785 1 11.39929821 -4.968462623 2.770941895 0.890069573 1.166037285 0.539364719 0.108547444 0.187866955 2.886481879 0.017630156 0.062313735 1.08E-05 4.968462623 0.275967712 SNS(ph)FIGVPNGEVEMPLK ddPTM_HeLa_CUDC101_4h_R1 3 SNSFIGVPNGEVEMPLK 17 0 Q9H7E2-2;Q9H7E2;Q9H7E2-3 Q9H7E2-2 TDRD3 Tudor domain-containing protein 3 1 0 S(0.033)NS(0.967)FIGVPNGEVEMPLK;S(0.449)NS(0.551)FIGVPNGEVEMPLK;S(0.208)NS(0.792)FIGVPNGEVEMPLK ;; 115.53 0.00013476 9277100 3943.09 2686.64 2401.23 2611.36 3586.64 3588.37 3501.61 3526.66 2707.61 3150.02 TRUE FALSE FALSE 3480.886968 2769.412194 2531.047757 2717.862548 3322.060713 3519.927821 3636.668271 3928.120719 2596.00117 3131.283541 1.111648601 0.884433542 0.808309987 0.867970758 1.060926189 1.124116604 1.161398584 1.254476213 0.829053369 1 11.61253844 -4.968107042 1.772271408 1.008122343 1.224856883 0.439342113 0.110579524 0.353355319 2.063646301 0.01722717 0.080643173 1.08E-05 4.968107042 0.21673454 DLLPSGSRDEPPPASQSTSQDCS(ph)QALKQSP ddPTM_HeLa_CUDC101_4h_R1 1 DLLPSGSRDEPPPASQSTSQDCSQALKQSP 30 2 Q5JRA6-4;Q5JRA6-2;Q5JRA6 Q5JRA6-4 MIA3 Melanoma inhibitory activity protein 3 1 0 DLLPSGSRDEPPPAS(0.008)QS(0.119)T(0.119)S(0.119)QDCS(0.557)QALKQS(0.079)P 69.845 4.55E-05 13378000 1485.2 1596.3 1361.5 1509.4 1461.1 1427.5 1055.7 1065 1436.3 1635.2 TRUE FALSE FALSE 1311.107107 1645.480111 1435.106808 1570.959856 1353.317564 1400.272816 1096.418703 1186.235295 1377.095106 1625.473758 0.806599984 1.012308014 0.882885252 0.966462761 0.832568079 0.861455197 0.674522549 0.729778189 0.847196148 1 10.66664455 -4.966452081 1.63401935 0.915008447 0.692481428 0.572302798 0.068517766 0.263624019 1.277604576 0.01196901 0.060222654 1.08E-05 4.966452081 -0.222527019 RPSS(ph)PVISK ddPTM_HeLa_CUDC101_4h_R1 1 RPSSPVISK 9 1 Q96T17;Q96T17-2;Q96T17-5;Q96T17-4 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 RPS(0.245)S(0.755)PVISK 73.36 0.031372 99556000 7402.7 6159.2 7292.8 5789.8 7027.2 5867.6 4894.8 4454 6137.9 6309.5 TRUE FALSE FALSE 6534.966728 6348.957652 7687.070828 6025.93307 6508.817456 5755.685306 5083.594076 4961.025356 5884.893164 6271.970813 1.041931942 1.012274744 1.225622863 0.960771861 1.037762714 0.917683688 0.810525786 0.790983489 0.938284526 1 12.61470313 -4.964159747 1.944166149 1.032921415 0.787611156 0.616886232 0.072967882 0.156337242 1.122513905 0.009518728 0.041649557 1.09E-05 4.964159747 -0.245310259 MYREEPT(ph)S(ph)IMNAIK ddPTM_HeLa_CUDC101_4h_R1 1 MYREEPTSIMNAIK 14 1 Q96N64-3;Q96N64-2;Q96N64 Q96N64-3 PWWP2A PWWP domain-containing protein 2A 2 0 MY(0.57)REEPT(0.689)S(0.742)IMNAIK 75.294 0.0030947 0 389.29 438.35 439.08 341.23 533.38 555.94 529.29 559.25 503.24 391.68 TRUE FALSE FALSE 343.6580163 451.8550439 462.8179929 355.1468343 494.03362 545.3363708 549.7048926 622.9127594 482.4962342 389.3502699 0.882644865 1.1605361 1.188693135 0.912152531 1.268866772 1.400631803 1.411851834 1.599877559 1.239234364 1 8.604924816 -4.962976357 0.548042731 0.950931097 1.759979401 0.599567063 0.138083095 0.666873 0.212563384 0.022991779 0.29759983 1.09E-05 4.962976357 0.809048304 LAIQGPEDSPS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 LAIQGPEDSPSR 12 0 Q15773 Q15773 MLF2 Myeloid leukemia factor 2 1 0 LAIQGPEDS(0.096)PS(0.904)R;LAIQGPEDS(0.096)PS(0.904)R ; 178.67 1.90E-07 596300000 7834.4 6904.6 6199.9 6433.1 7368.2 5940 4915.5 4379.6 7609.6 7173 TRUE FALSE FALSE 6916.063508 7117.322542 6535.085348 6695.469624 6824.662566 5826.704397 5105.092482 4878.155961 7295.929067 7130.334677 0.969949353 0.998175102 0.916518739 0.939011972 0.957130748 0.817171235 0.715968144 0.684141233 1.02322393 1 12.79975408 -4.962264552 1.124105484 0.981243556 0.650006307 0.936870543 0.028872789 0.107068016 0.207044984 0.004216264 0.031069787 1.09E-05 4.962264552 -0.331237249 GCWEVS(ph)PTER ddPTM_HeLa_CUDC101_4h_R1 1 GCWEVSPTER 10 0 Q8IZT6;Q8IZT6-2 Q8IZT6 ASPM Abnormal spindle-like microcephaly-associated protein 1 0 GCWEVS(0.772)PT(0.228)ER 99.752 0.016522 3759100 1865 1500.1 1431.4 1328.8 1646.3 1230.5 1033.2 983.26 1480.4 833.29 TRUE FALSE FALSE 1646.387527 1546.316303 1508.785814 1382.994208 1524.855729 1207.030263 1073.05087 1095.190344 1419.377285 828.333554 1.987590047 1.866779748 1.821471322 1.669610269 1.840871617 1.457179003 1.295433301 1.322161029 1.71353349 1 9.69406802 -4.961855821 5.469573177 1.574408894 1.318623359 0.16596961 0.273441086 0.442860028 33.48249276 0.057800342 0.176282496 1.09E-05 4.961855821 -0.255785535 T(ph)VSSPIPYTPSPSSSR ddPTM_HeLa_CUDC101_4h_R1 1 TVSSPIPYTPSPSSSR 16 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 T(0.494)VS(0.494)S(0.013)PIPYTPSPSSSR 142.95 0.0013915 8457200 690.99 875.44 706.79 657.05 761.68 814.2 995.57 839.08 854.73 715.65 TRUE FALSE FALSE 609.9931997 902.4112687 745.0012053 683.847339 705.4923839 798.6704915 1033.969468 934.5974755 819.4976676 711.393282 0.857462693 1.268512497 1.047242396 0.961278882 0.991705153 1.122684894 1.453442835 1.313756398 1.151961494 1 9.47450354 -4.955140234 3.104620855 0.972191669 1.384158104 0.493379934 0.123688721 0.114820586 2.244698698 0.01741668 0.059636179 1.11E-05 4.955140234 0.411966435 S(ph)TEPSVTPDLLNFK ddPTM_HeLa_CUDC101_4h_R1 1 STEPSVTPDLLNFK 14 0 A0A494BZV2;Q6WCQ1-2;Q6WCQ1 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(0.854)T(0.146)EPSVTPDLLNFK 172.58 3.86E-07 7057800 4329.1 4027.5 3296.6 3684.4 3398.1 3436.4 2758.7 1339.3 3878.4 4228.7 TRUE FALSE FALSE 3821.64946 4151.582501 3474.824168 3834.665757 3147.428933 3370.856395 2865.103983 1491.760498 3718.53071 4203.547504 0.909148631 0.987637822 0.82664087 0.912245134 0.74875541 0.80190753 0.681591913 0.354881323 0.884617268 1 12.03739166 -4.093756838 0.566246149 0.956560815 1.58E-24 0.857827372 0.067578288 1.021267925 0.194051385 0.012041583 0.666978053 8.06E-05 4.093756838 -0.956560815 down AEVYGSENES(ph)ER ddPTM_HeLa_CUDC101_4h_R1 1 AEVYGSENESER 12 0 Q9BVS4-2;Q9BVS4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 0 AEVYGS(0.202)ENES(0.798)ER 124.48 0.0026142 34611000 1520.9 1013.6 1047.4 1319.1 876 905.71 720.96 734.71 1149.3 359.38 TRUE FALSE FALSE 1342.622408 1044.827815 1104.025612 1372.8986 811.3792252 888.4350908 748.7676687 818.3464166 1101.925368 357.2423918 3.758295316 2.924702775 3.090410426 3.843045034 2.271228846 2.486925156 2.095965333 2.290731547 3.08453138 1 8.480759476 -4.954698146 2.69009427 2.553721855 2.195792996 0.013170329 0.796360767 1.389409041 20.02648056 0.164591503 0.598182383 1.11E-05 4.954698146 -0.357928858 SGS(ph)PSDNSGAEEMEVSLAKPK ddPTM_HeLa_CUDC101_4h_R1 2 SGSPSDNSGAEEMEVSLAKPK 21 1 P31749-2;P31749 P31749-2 AKT1 RAC-alpha serine/threonine-protein kinase 1 0 S(0.103)GS(0.517)PS(0.359)DNS(0.021)GAEEMEVSLAKPK;S(0.162)GS(0.544)PS(0.203)DNS(0.091)GAEEMEVSLAKPK ; 130.02 2.40E-07 111988000 6744.8 5772.8 6203.1 5746.3 6548.5 5713 5065.7 4565.6 6317 6190.5 TRUE FALSE FALSE 5954.184768 5950.653126 6538.458349 5980.658952 6065.430201 5604.034044 5261.085746 5085.329449 6056.610586 6153.678631 0.967581365 0.967007457 1.062528406 0.971883537 0.98565924 0.910680323 0.854949708 0.826388532 0.984226013 1 12.58723339 -4.954223382 1.753967825 0.988766408 0.828449033 0.84342361 0.02638081 0.113235844 0.644724189 0.003996304 0.019238804 1.11E-05 4.954223382 -0.160317375 DTS(ph)PSSGS(ph)AVSSSK ddPTM_HeLa_CUDC101_4h_R1 1 DTSPSSGSAVSSSK 14 0 Q8NEY8;F8W6A0;F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;F8WF16;B7Z8L1;Q8NEY8-5;Q8NEY8-6;Q8NEY8-7 Q8NEY8 PPHLN1 Periphilin-1 2 0 DT(0.41)S(0.59)PS(0.039)S(0.014)GS(0.698)AVS(0.22)S(0.025)S(0.004)K 122.16 0.00036863 0 2721.6 2290.5 2174.1 2309.4 2601.1 2881 3240.9 3101 2217.5 2169.6 TRUE FALSE FALSE 2402.578174 2361.06759 2291.638422 2403.587314 2409.222035 2826.049725 3365.902599 3454.005305 2126.093711 2156.695123 1.114009184 1.094761872 1.062569483 1.114477094 1.117089759 1.310361254 1.56067613 1.601526924 0.98581097 1 11.07460653 -4.953923571 1.471089943 1.061755784 1.636363915 0.962549791 0.040628383 0.069733598 0.262693948 0.007052006 0.039894145 1.11E-05 4.953923571 0.574608131 RNDDIS(ph)ELEDLSELEDLKDAK ddPTM_HeLa_CUDC101_4h_R1 2 RNDDISELEDLSELEDLKDAK 21 2 D6RAY8;Q9H4L7;Q9H4L7-2 D6RAY8 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 0 RNDDIS(1)ELEDLSELEDLKDAK;RNDDIS(1)ELEDLSELEDLKDAK ; 120.33 7.77E-07 46057000 4727.7 3850.9 3722.9 3887.4 4295.2 5215 5424.9 5517.8 3812.8 4098.8 TRUE FALSE FALSE 4173.526173 3969.541665 3924.171235 4045.944975 3978.351653 5115.532564 5634.14021 6145.924048 3655.63477 4074.420155 1.024323956 0.974259284 0.963123852 0.993011231 0.976421552 1.255524067 1.382807859 1.508416858 0.897215955 1 11.99237904 -4.953794558 1.902109965 1.000714987 1.479237532 0.945237591 0.046156058 0.042651687 0.291544114 0.004919562 0.022188992 1.11E-05 4.953794558 0.478522545 T(ph)DGSIS(ph)GDRQPVTVADYISR ddPTM_HeLa_CUDC101_4h_R1 1 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 0 T(0.596)DGS(0.521)IS(0.882)GDRQPVT(0.001)VADYISR 60.334 0.036446 56814000 5795.3 5066 4945.5 5078.7 5409.1 5882.3 6050.7 5635.5 5594.1 5663.9 TRUE FALSE FALSE 5115.983719 5222.077455 5212.868689 5285.831338 5010.081469 5770.104928 6284.077526 6277.022541 5363.50883 5630.210871 0.908666449 0.927510101 0.925874503 0.938833635 0.889856807 1.024847037 1.116135376 1.114882317 0.952630186 1 12.45897324 -4.95019509 3.458026013 0.946090448 1.114956652 0.856478549 0.029462161 0.086553973 2.123494783 0.005782008 0.019210616 1.12E-05 4.95019509 0.168866204 TPADTGFAFPDWAYKPESS(ph)PGSR ddPTM_HeLa_CUDC101_4h_R1 1 TPADTGFAFPDWAYKPESSPGSR 23 1 P50548 P50548 ERF ETS domain-containing transcription factor ERF 1 0 TPADTGFAFPDWAYKPES(0.25)S(0.733)PGS(0.017)R 149.09 1.15E-07 96551000 1829.8 1703.6 1358.4 1434 1984.5 1905.3 2150.7 1906.9 1532.1 1927.1 TRUE FALSE FALSE 1615.313618 1756.085897 1431.839213 1492.484718 1838.107389 1868.959577 2233.653219 2123.973788 1468.94619 1915.637523 0.843225087 0.916710951 0.747447884 0.779106016 0.959527764 0.975633205 1.166010371 1.108755577 0.766818446 1 10.90360889 -4.9495762 2.406210845 0.90047146 1.141134161 0.591293853 0.087142779 0.18611466 2.117954498 0.013507307 0.052302254 1.12E-05 4.9495762 0.240662702 LS(ph)PGETPER ddPTM_HeLa_CUDC101_4h_R1 1 LSPGETPER 9 0 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 0 LS(0.965)PGET(0.035)PER 94.409 0.022983 6795700 1983.8 1577.9 1797.5 1521.9 2132.5 1774.4 1665.8 1395.8 1644.1 1857.4 TRUE FALSE FALSE 1751.261971 1626.513229 1894.678287 1583.96966 1975.189724 1740.556276 1730.050464 1554.69223 1576.329502 1846.352102 0.948498376 0.880933397 1.026173873 0.857891438 1.069779551 0.942700081 0.937010044 0.842034533 0.853753464 1 10.85046199 -4.949545917 0.010275479 1.862453877 1.02E-07 0 0.078675351 6191.115586 12.79387679 1094.318911 1227.086327 1.12E-05 4.949545917 -1.862453775 EQLDTSNES(ph)AEPK ddPTM_HeLa_CUDC101_4h_R1 1 EQLDTSNESAEPK 13 0 Q96DX7 Q96DX7 TRIM44 Tripartite motif-containing protein 44 1 0 EQLDTS(0.137)NES(0.863)AEPK 181.71 8.02E-11 9478000 4958 3933.6 3627.8 4134.5 3507.8 3732.5 3323.4 2712.9 4847.1 4647.1 TRUE FALSE FALSE 4376.830756 4054.789554 3823.929841 4303.122781 3249.036583 3661.308781 3451.584651 3021.72557 4647.300486 4619.458843 0.947476946 0.877762892 0.827787404 0.93152097 0.703337056 0.792583916 0.747183765 0.654129774 1.006027036 1 12.17350814 -4.948870715 0.266755649 1.015637469 0.493399866 0.826309894 0.048955569 1.703111086 0.128009709 0.031083071 0.284674253 1.12E-05 4.948870715 -0.522237602 SQS(ph)ES(ph)SDEVTELDLSHGK ddPTM_HeLa_CUDC101_4h_R1 1 SQSESSDEVTELDLSHGK 18 0 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5 Q86YS7 C2CD5 C2 domain-containing protein 5 2 0 S(0.417)QS(0.578)ES(0.543)S(0.462)DEVT(0.001)ELDLSHGK 90.475 0.00098558 0 1742.8 1566.3 1226.8 1374.9 1655.1 1674.2 1648.5 1607.1 1564.5 1531.3 TRUE FALSE FALSE 1538.511626 1614.555846 1293.124519 1430.974365 1533.00657 1642.267424 1712.083197 1790.045768 1500.010648 1522.191759 1.010721295 1.060678352 0.84951486 0.940074965 1.007104762 1.078883402 1.124748696 1.175966009 0.985428175 1 10.5719344 -4.948606733 1.858950184 0.992366382 1.162877377 0.625298203 0.053926701 0.205744679 1.33532635 0.00821956 0.038016719 1.13E-05 4.948606733 0.170510995 GVDLLLEGVQGESS(ph)PTRR ddPTM_HeLa_CUDC101_4h_R1 1 GVDLLLEGVQGESSPTRR 18 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 0 GVDLLLEGVQGES(0.208)S(0.655)PT(0.137)RR 84.324 0.0039455 7613100 1597.2 1782.9 1785.2 1258.4 1659 1682.5 1643.9 1550.8 1817 1710.1 TRUE FALSE FALSE 1409.978637 1837.829036 1881.713312 1309.722991 1536.618875 1650.409116 1707.305774 1727.336803 1742.102491 1699.928249 0.829434206 1.081121534 1.106936903 0.770457807 0.903931608 0.970869869 1.004339903 1.01612336 1.024809425 1 10.73125814 -4.947708924 3.438270339 0.932293411 1.009949062 0 0.10174862 0.503512377 12.16656191 0.015391593 0.051336444 1.13E-05 4.947708924 0.077655651 FRDLS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 2 FRDLSPPR 8 1 Q5JTU8;B1AMJ5;A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8 Q5JTU8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 FRDLS(1)PPR;FRDLS(1)PPR ; 66.92 0.040156 12906600 2217.1 2055.78 2126.56 2147.1 2285.7 2073.64 1546.24 1768.98 2116.9 2316.2 TRUE FALSE FALSE 1957.214899 2119.116145 2241.528266 2234.668019 2117.088465 2034.088772 1605.878995 1970.353533 2029.640486 2302.423139 0.85006742 0.920385184 0.973551832 0.970572255 0.919504512 0.883455668 0.697473443 0.855773858 0.881523666 1 11.16893728 -4.947219341 5.772297836 0.932033025 0.777087675 0.552295085 0.054785222 0.121397312 8.769062105 0.009127903 0.027963623 1.13E-05 4.947219341 -0.15494535 VESGYFS(ph)LEK ddPTM_HeLa_CUDC101_4h_R1 2 VESGYFSLEK 10 0 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 VES(0.003)GYFS(0.997)LEK;VESGYFS(1)LEK ; 134.99 0.00177 53317000 4612 3981.7 3680.9 3313.2 4141.4 2990.3 2626.1 2099.95 3669.4 3879.8 TRUE FALSE FALSE 4071.388351 4104.371458 3879.900588 3448.326617 3835.897173 2933.26501 2727.389557 2338.99982 3518.145779 3856.722777 1.0556601 1.064212207 1.006009717 0.894107981 0.994600181 0.760558946 0.707178015 0.606473411 0.912211217 1 11.91315973 -4.943808876 0.854823558 1.028531191 0.547896162 0.855372337 0.05696229 0.202202167 0.191137251 0.007274028 0.073058168 1.14E-05 4.943808876 -0.480635028 YSDVEVPAS(ph)VTGYSFASDGDSGTCSPLRHSFQK ddPTM_HeLa_CUDC101_4h_R1 1 YSDVEVPASVTGYSFASDGDSGTCSPLRHSFQK 33 1 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;P35611-5 E7EV99 ADD1 Alpha-adducin 1 0 YSDVEVPAS(0.183)VT(0.169)GY(0.145)S(0.145)FAS(0.145)DGDS(0.065)GT(0.058)CS(0.051)PLRHS(0.04)FQK 49.101 0.0088934 17696000 2265.9 1271.2 1078.2 1162.3 2390.5 2119.3 2409.3 2600.4 1724.2 1353.2 TRUE FALSE FALSE 2000.294637 1310.364165 1136.490753 1209.703618 2214.157578 2078.877883 2502.227508 2896.419025 1653.127746 1345.151106 1.487040844 0.974139009 0.844879618 0.89930686 1.646028887 1.545460487 1.860183214 2.153229486 1.228953192 1 10.39355253 -4.943334558 1.19062358 1.170113852 2.147761377 0.719792402 0.223634852 0.337589002 0.748564134 0.041995102 0.300414866 1.14E-05 4.943334558 0.977647525 GNKS(ph)PS(ph)PPDGS(ph)PAATPEIR ddPTM_HeLa_CUDC101_4h_R1 1 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-11;O00499-2;O00499;O00499-9;O00499-10;O00499-7;O00499-8;O00499-4;O00499-3;O00499-5 O00499-6 BIN1 Myc box-dependent-interacting protein 1 3 0 GNKS(1)PS(1)PPDGS(0.636)PAAT(0.364)PEIR 62.646 0.0029555 0 2209.4 2101.3 2102.4 1923.3 2274.6 1931.5 1349.4 1467.9 2278.2 2237 TRUE FALSE FALSE 1950.417481 2166.038562 2216.062103 2001.740487 2106.80729 1894.659856 1401.44681 1634.999803 2184.291632 2223.694225 0.87710687 0.974072127 0.996567819 0.900186934 0.947435698 0.852032548 0.630233597 0.735262872 0.982280571 1 11.1187427 -4.942415735 3.638901244 0.943782461 0.683767782 0.843911691 0.045984129 0.072612735 1.960342132 0.007684306 0.025343443 1.14E-05 4.942415735 -0.260014679 RSEACPCQPDS(ph)GSPLPAEEEK ddPTM_HeLa_CUDC101_4h_R1 2 RSEACPCQPDSGSPLPAEEEK 21 1 A0A0G2JMS7;A0A0G2JNZ2;A0A669KB89;Q14160-2;Q14160;A0A0G2JPP5;Q14160-3 A0A0G2JMS7 SCRIB Protein scribble homolog 1 0 RS(0.001)EACPCQPDS(0.565)GS(0.434)PLPAEEEK;RSEACPCQPDS(0.731)GS(0.269)PLPAEEEK ; 83.236 0.00064432 30388000 4764.7 3974.6 3392.4 3427.9 4057.8 3198.3 2823.8 2385.66 3977.7 3008.3 TRUE FALSE FALSE 4206.189089 4097.052715 3575.803405 3567.704579 3758.464178 3137.297756 2932.714912 2657.233891 3813.737522 2990.406498 1.406560978 1.37006548 1.195758305 1.193050036 1.25684056 1.049120833 0.980707778 0.888586182 1.275324116 1 11.54612589 -4.942031596 1.995110463 1.214249305 0.913577716 0.567609108 0.108776378 0.311260901 2.363077496 0.023560635 0.104101845 1.14E-05 4.942031596 -0.300671589 MEVDRS(ph)PGLPMSDLK ddPTM_HeLa_CUDC101_4h_R1 2 MEVDRSPGLPMSDLK 15 1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;H0Y2S9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 MEVDRS(1)PGLPMSDLK;MEVDRS(1)PGLPMSDLK ; 116.61 0.00072796 88584000 10076.9 9011.3 8363.3 9373.4 11343.8 10084.6 9558.6 6476.8 9573.1 9666.6 TRUE FALSE FALSE 8895.701058 9288.927472 8815.445296 9755.687767 10506.99047 9892.253057 9927.278404 7214.092732 9178.492766 9609.102633 0.925757732 0.966680014 0.917405676 1.01525482 1.093441383 1.029466896 1.033111913 0.750756133 0.955187296 1 13.23018599 -4.940502555 0.001905176 1.675293867 0.258269334 0.006635003 0.088424018 1983157.75 757.2594987 278617.7946 284634.8133 1.15E-05 4.940502555 -1.417024533 RAS(ph)DSVFQPK ddPTM_HeLa_CUDC101_4h_R1 1 RASDSVFQPK 10 1 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 RAS(0.96)DS(0.04)VFQPK 89.663 0.015464 7201200 4218.5 3994.9 3828.5 4187.8 4810.9 4375.6 4588.5 4470.5 3940.6 3734.1 TRUE FALSE FALSE 3724.013825 4117.978134 4035.480291 4358.596585 4456.009492 4292.14272 4765.479982 4979.40365 3778.1668 3711.889407 1.003266374 1.109402162 1.087176865 1.174225875 1.200469357 1.156322899 1.283842124 1.34147414 1.017855433 1 11.85793801 -4.940495226 0.342385794 0.983554506 1.483068545 0.902923391 0.034590191 0.846331403 0.098114761 0.013989913 0.163999091 1.15E-05 4.940495226 0.499514039 NIGS(ph)DFIPR ddPTM_HeLa_CUDC101_4h_R1 2 NIGSDFIPR 9 0 Q5T853;Q5T857;P41279;P41279-2 Q5T853 MAP3K8 Mitogen-activated protein kinase kinase kinase 8 1 0 NIGS(1)DFIPR;NIGS(1)DFIPR ; 100.09 0.017662 12228800 5215.5 4194.3 4065.6 3968.6 5775.1 5202.9 5500.8 5485.9 4401.4 4612 TRUE FALSE FALSE 4604.146996 4323.521412 4285.398634 4130.456662 5349.082379 5103.663351 5712.967699 6110.392681 4219.972429 4584.567619 1.004270714 0.943059798 0.93474434 0.90094792 1.166758313 1.113226759 1.246130099 1.332817659 0.920473375 1 12.16256996 -4.940141023 1.105787569 0.987715031 1.344429632 0.817404701 0.061032042 0.22465018 0.411594652 0.009031432 0.070265879 1.15E-05 4.940141023 0.356714601 WLAES(ph)PVGLPPEEEDKLTR ddPTM_HeLa_CUDC101_4h_R1 4 WLAESPVGLPPEEEDKLTR 19 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 WLAES(1)PVGLPPEEEDKLTR;WLAES(1)PVGLPPEEEDKLTR;WLAES(1)PVGLPPEEEDKLTR;WLAES(1)PVGLPPEEEDKLTR ;;; 146.72 2.46E-05 118832000 14508.1 13055.7 13387 14477.6 14798.2 12478.2 10813.1 9363.5 14291.1 14533.8 TRUE FALSE FALSE 12807.48251 13457.93064 14110.74171 15068.05911 13706.56627 12240.19913 11230.16489 10429.40299 13702.01481 14447.35231 0.886493403 0.931515364 0.97670088 1.04296336 0.948725135 0.847227842 0.777316469 0.721890265 0.948410097 1 13.8185175 -4.937946995 2.021460927 0.954053648 0.736006448 0.817437629 0.040784799 0.141585241 1.106139393 0.007859775 0.03457897 1.15E-05 4.937946995 -0.2180472 SFS(ph)ENGDR ddPTM_HeLa_CUDC101_4h_R1 1 SFSENGDR 8 0 P47974 P47974 ZFP36L2 "Zinc finger protein 36, C3H1 type-like 2" 1 0 S(0.01)FS(0.99)ENGDR 84.687 0.036342 13185000 1260.2 869.01 1076.1 1303.4 1311.6 1423.2 1907.4 1453.8 1137.7 1340.7 TRUE FALSE FALSE 1112.481266 895.7831681 1134.277221 1356.558286 1214.845881 1396.054831 1980.969057 1619.294716 1090.803524 1332.725457 0.834741515 0.672143811 0.851095937 1.017882775 0.911549993 1.047518695 1.486404456 1.215024976 0.818475793 1 10.3801639 -4.936971725 4.369212911 0.90426194 1.347459342 0.730008287 0.113963812 0.086119014 3.299790545 0.017068851 0.054324168 1.16E-05 4.936971725 0.443197402 AEAPPLEREDS(ph)GTFSLGK ddPTM_HeLa_CUDC101_4h_R1 2 AEAPPLEREDSGTFSLGK 18 1 G5E9Q4;O75569 G5E9Q4 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 1 0 AEAPPLEREDS(0.943)GT(0.057)FSLGK;AEAPPLEREDS(0.922)GT(0.078)FS(0.001)LGK ; 106.57 0.0032913 100903000 5159.1 4890.8 4704.5 4574.4 4999.4 5542.2 5764.1 5400.3 4810.5 5486.8 TRUE FALSE FALSE 4554.358119 5041.479751 4958.8395 4760.963804 4630.604222 5436.491769 5986.423268 6015.048323 4612.209154 5454.16427 0.83502401 0.924335884 0.909184112 0.872904366 0.849003439 0.996759815 1.097587636 1.10283593 0.845630774 1 12.41314244 -4.936350598 3.361445986 0.91164889 1.100510552 0.738004303 0.049085577 0.126941504 2.889658975 0.009253094 0.03138393 1.16E-05 4.936350598 0.188861662 ERPISMINEASNYNVTSDYAVHPMS(ph)PVGR ddPTM_HeLa_CUDC101_4h_R1 1 ERPISMINEASNYNVTSDYAVHPMSPVGR 29 1 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-5;Q9HAU0-3;F5H1X3 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 ERPISMINEASNYNVT(0.002)SDY(0.001)AVHPMS(0.997)PVGR 93.566 6.96E-09 21573000 715.83 592.64 470.69 373.03 614.77 572.25 621.74 519.2 592.99 482.56 TRUE FALSE FALSE 631.9214925 610.8985359 496.1369252 388.2437758 569.4196419 561.3352847 645.7207201 578.3036293 568.5467012 479.6897117 1.317354692 1.273528535 1.034287193 0.8093644 1.187058275 1.17020497 1.346121679 1.205578555 1.185238473 1 8.905957687 -4.935422331 5.011212388 1.13114089 1.275549294 0.160516265 0.141848318 0.354814005 17.43440185 0.023959465 0.074777767 1.16E-05 4.935422331 0.144408403 FTGS(ph)FDDDPDPHRDPYGEEVDRR ddPTM_HeLa_CUDC101_4h_R1 1 FTGSFDDDPDPHRDPYGEEVDRR 23 2 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 1 0 FT(0.079)GS(0.921)FDDDPDPHRDPYGEEVDRR 52.158 0.014534 19448000 2299.5 1760.4 1745.6 2034.6 2071.5 2182.5 2275.3 2072.5 2083.1 2076.3 TRUE FALSE FALSE 2029.956096 1814.635837 1839.972416 2117.579782 1918.689572 2140.872449 2363.059083 2308.425023 1997.233736 2063.950075 0.98352965 0.879205296 0.891481067 1.025984014 0.929620147 1.037269493 1.14492066 1.11845003 0.96767541 1 11.01119236 -4.933879227 3.727265252 0.974654899 1.130877288 0.683117964 0.046991739 0.111644421 3.11208211 0.007166822 0.023645274 1.16E-05 4.933879227 0.156222389 RGSDASDFDLLETQS(ph)ACSDTSESSAAGGQGNSR ddPTM_HeLa_CUDC101_4h_R1 1 RGSDASDFDLLETQSACSDTSESSAAGGQGNSR 33 1 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;H0Y390;Q9UPN3-5;H0Y314;H3BPE1;H3BQK9;H0Y6T5;H0Y4F5 A0A590UJG2;H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 RGSDASDFDLLET(0.113)QS(0.885)ACS(0.002)DTSESSAAGGQGNSR 143.39 2.45E-23 17301000 688.7 499.25 495.43 564.37 545.02 506.47 358.12 424.77 564.08 443.4 TRUE FALSE FALSE 607.97163 514.6313007 522.2144444 587.387448 504.8149604 496.8099286 371.9328084 473.1240998 540.8283836 440.7626371 1.379362902 1.167592844 1.184797441 1.332661616 1.145321581 1.127159806 0.843839239 1.07342152 1.22702865 1 8.783858123 -4.932971603 5.658719554 1.190577546 0.959698052 0.431988574 0.110774249 0.193713547 11.56994374 0.021042567 0.064872427 1.17E-05 4.932971603 -0.230879494 GGVTGSPEASIS(ph)GSKGDLK ddPTM_HeLa_CUDC101_4h_R1 1 GGVTGSPEASISGSKGDLK 19 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GGVTGSPEAS(0.148)IS(0.501)GS(0.351)KGDLK 101.39 0.0061813 31900000 3464.2 3175.8 3055.3 3429.8 3576 3623.2 3615.8 3420.3 3040.2 3462.4 TRUE FALSE FALSE 3058.131727 3273.642634 3220.47876 3569.682069 3312.205604 3554.093497 3755.262617 3809.653127 2914.881669 3441.805491 0.888525437 0.951141092 0.935694585 1.037153924 0.962345378 1.032624739 1.091073458 1.106876358 0.846904823 1 11.74894985 -4.93168715 0.810523725 0.947275362 1.140633386 0.644644008 0.047609719 0.603807636 0.494121127 0.007913928 0.085106239 1.17E-05 4.93168715 0.193358024 EEKREEDEENDNDNESDHDEADS(ph) ddPTM_HeLa_CUDC101_4h_R1 1 EEKREEDEENDNDNESDHDEADS 23 2 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 0 EEKREEDEENDNDNES(0.44)DHDEADS(0.56) 78.401 0.00071151 28144000 3806.5 3383.2 3855.8 3407.9 4440.8 3820.9 4094.1 3612.2 3753 4295.4 TRUE FALSE FALSE 3360.30784 3487.432382 4064.256211 3546.888892 4113.211031 3748.022699 4252.010808 4023.398247 3598.299752 4269.85077 0.786984844 0.81675744 0.951849709 0.830682167 0.963314938 0.87778775 0.995821877 0.942280764 0.842722602 1 12.05996993 -4.931448288 1.488720782 0.89193988 0.969472526 0.162120388 0.068462839 0.978911647 3.768821415 0.013288049 0.076966624 1.17E-05 4.931448288 0.077532646 SLS(ph)MDSQVPVYSPSIDLK ddPTM_HeLa_CUDC101_4h_R1 2 SLSMDSQVPVYSPSIDLK 18 0 Q9ULJ3-2;Q9ULJ3 Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 S(0.114)LS(0.883)MDS(0.003)QVPVYSPSIDLK;S(0.059)LS(0.889)MDS(0.052)QVPVYSPSIDLK ; 194.27 1.36E-16 19449000 5063.4 3517.4 3952.2 3400.5 4720.3 4767.8 5135.5 4750.5 4996 4447.9 TRUE FALSE FALSE 4469.875928 3625.766925 4165.867887 3539.187088 4372.092873 4676.862159 5333.577955 5291.277718 4790.062765 4421.443693 1.010953941 0.820041411 0.9421963 0.800459609 0.988838302 1.057768115 1.206297835 1.196730771 1.083370749 1 12.1103018 -4.928735233 2.58783795 0.969840195 1.206678947 0.589974707 0.082550555 0.159740578 2.117266009 0.01203224 0.045844124 1.18E-05 4.928735233 0.236838752 TNS(ph)TGGSSGSSVGGGSGK ddPTM_HeLa_CUDC101_4h_R1 4 TNSTGGSSGSSVGGGSGK 18 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EKH8;K7EIZ7 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 T(0.251)NS(0.69)T(0.057)GGS(0.001)SGSSVGGGSGK;T(0.02)NS(0.449)T(0.276)GGS(0.171)S(0.08)GS(0.005)SVGGGSGK;T(0.053)NS(0.742)T(0.206)GGSSGSSVGGGSGK;TNS(0.497)T(0.497)GGS(0.005)S(0.001)GSSVGGGSGK ;;; 220.36 6.33E-33 135818000 5691.64 1910.99 4637.46 5604.02 3493.88 3302.87 3498.24 1290.68 4845.11 5974.31 TRUE FALSE FALSE 5024.474587 1969.865337 4888.175115 5832.576158 3236.143433 3239.873258 3633.168289 1437.605794 4645.392515 5938.774538 0.846045687 0.331695592 0.823094914 0.982117796 0.544917712 0.545545758 0.611770705 0.242071118 0.782213988 1 12.53594955 -4.927442737 0.17728857 1.09063005 3.62E-11 0.337227232 0.200315173 8.855164761 0.364459781 0.407344091 2.293990088 1.18E-05 4.927442737 -1.09063005 S(ph)RERPSQPEGLR ddPTM_HeLa_CUDC101_4h_R1 1 SRERPSQPEGLR 12 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 S(0.999)RERPS(0.001)QPEGLR 55.776 0.037627 9805800 1141.7 814.35 1157.2 1247.6 1126.8 1290.8 1371.2 1202 1129.8 1498.2 TRUE FALSE FALSE 1007.871657 839.4391583 1219.761732 1298.482521 1043.678209 1266.180141 1424.087643 1338.830821 1083.229166 1489.28864 0.676747025 0.563651085 0.819023056 0.871881035 0.700789747 0.85019123 0.95622004 0.898973366 0.727346692 1 10.54040768 -4.927101302 5.662807257 0.812198709 0.925112582 0.164572553 0.118470672 0.408808731 23.1563608 0.021538072 0.066487663 1.18E-05 4.927101302 0.112913874 EDSGLFS(ph)PIR ddPTM_HeLa_CUDC101_4h_R1 3 EDSGLFSPIR 10 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 EDSGLFS(1)PIR;EDSGLFS(1)PIR;EDSGLFS(1)PIR ;; 134.75 0.0017936 29481300 7747.3 6903.6 6292.6 7241.2 7816.7 7130.5 7586.7 6639.2 7029.8 6603.7 TRUE FALSE FALSE 6839.173238 7116.291733 6632.79699 7536.527435 7240.077614 6994.497593 7879.32156 7394.979691 6740.028669 6564.420899 1.041854772 1.084069995 1.010416165 1.148087173 1.102927086 1.065516319 1.200307184 1.126524305 1.026751449 1 12.68045203 -4.925005314 0.216831173 0.986997748 1.263219927 0.560297769 0.040635885 4.185972156 0.226691857 0.04341269 0.316810847 1.19E-05 4.925005314 0.276222179 QEEEDRDS(ph)PGPQVPDPK ddPTM_HeLa_CUDC101_4h_R1 1 QEEEDRDSPGPQVPDPK 17 1 M0R353;Q6NSJ2-2;Q6NSJ2 M0R353 PHLDB3 Pleckstrin homology-like domain family B member 3 1 0 QEEEDRDS(1)PGPQVPDPK 55.972 0.034686 8359000 4701.7 4264.4 3950.4 4580.7 4572.3 4031.3 3392.1 3401 4656.1 3795 TRUE FALSE FALSE 4150.573853 4395.781109 4163.970573 4767.520745 4235.010538 3954.409669 3522.934433 3788.156093 4464.173587 3772.427171 1.100239624 1.165239489 1.103790845 1.263780725 1.122622213 1.048240162 0.933864134 1.004169443 1.183369058 1 11.88127733 -4.924018755 5.267516317 1.082873896 0.970572804 0.298545718 0.078326995 0.23545259 11.5992988 0.012279186 0.038231965 1.19E-05 4.924018755 -0.112301092 LVVSSPTS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 LVVSSPTSPK 10 0 Q9Y4G2 Q9Y4G2 PLEKHM1 Pleckstrin homology domain-containing family M member 1 1 0 LVVS(0.007)S(0.019)PT(0.202)S(0.772)PK 112.71 0.0073626 13695000 5826.5 5079.5 4547.5 5299.1 5853.8 4652.2 3615.1 3454.1 4848 4912.1 TRUE FALSE FALSE 5143.526502 5235.993374 4793.351605 5515.220203 5421.976836 4563.467036 3754.535618 3847.300782 4648.163388 4882.882611 1.053379103 1.072316046 0.981664313 1.129500879 1.110404912 0.93458463 0.768917854 0.787915887 0.951930193 1 12.25351738 -4.923298584 3.50449615 1.038807095 0.778299261 0.797459048 0.052860542 0.067611033 1.644955709 0.006943248 0.023493378 1.19E-05 4.923298584 -0.260507834 S(ph)GDETPGSEVPGDK ddPTM_HeLa_CUDC101_4h_R1 3 SGDETPGSEVPGDK 14 0 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.983)GDET(0.017)PGSEVPGDK;S(1)GDETPGSEVPGDK;S(0.989)GDET(0.011)PGSEVPGDK ;; 157.37 6.50E-05 74154700 19112.7 13458.5 14138.9 12964.2 11257.9 14544.9 11739.8 6431.3 16606.5 20127 TRUE FALSE FALSE 16872.33828 13873.14043 14903.2917 13492.93611 10427.42715 14267.48027 12192.60802 7163.413196 15921.97304 20007.28371 0.843309793 0.693404494 0.744893306 0.674401199 0.521181551 0.713114307 0.609408463 0.358040267 0.79580883 1 14.28823769 -4.922531206 0.149661275 1.145532937 6.21E-15 0.642398607 0.099976025 5.078881928 0.168540117 0.270405394 1.23576302 1.20E-05 4.922531206 -1.145532937 GGVTGSPEAS(ph)ISGSKGDLK ddPTM_HeLa_CUDC101_4h_R1 1 GGVTGSPEASISGSKGDLK 19 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GGVTGSPEAS(0.396)IS(0.329)GS(0.274)KGDLK 85.636 0.023583 32680000 2774.7 2247.3 2080 2236.5 2126.8 2601.1 2767.7 2502.9 2356.3 2470.7 TRUE FALSE FALSE 2449.453872 2316.536649 2192.451092 2327.714137 1969.910201 2551.488351 2874.451116 2787.820019 2259.172317 2456.004167 0.997332947 0.943213648 0.892690298 0.947764735 0.80207934 1.038877859 1.170377133 1.135103945 0.919856875 1 11.26209729 -4.921765875 4.827336098 0.969377664 1.149209279 0.632276933 0.063464602 0.11712104 4.955894815 0.00960713 0.030289811 1.20E-05 4.921765875 0.179831615 PGMY(ph)PDPHSPFAVS(ph)PIPGR ddPTM_HeLa_CUDC101_4h_R1 1 PGMYPDPHSPFAVSPIPGR 19 0 P41162 P41162 ETV3 ETS translocation variant 3 2 0 PGMY(0.999)PDPHS(0.407)PFAVS(0.594)PIPGR 102.58 0.011854 4443700 1635.3 1611 1452.6 1768 1520.3 1668.9 2201 1463.9 1060.8 1237.4 TRUE FALSE FALSE 1443.612613 1660.633 1531.13195 1840.106682 1408.150498 1637.068513 2285.893307 1630.544459 1017.073375 1230.03989 1.173630729 1.350064347 1.244782354 1.495973177 1.144800676 1.330906848 1.858389574 1.325602911 0.826862107 1 10.26448939 -4.921545198 0.145307178 0.838293197 2.0657473 0.541999941 0.179702449 11.05182382 0.35371173 0.641104267 2.828343085 1.20E-05 4.921545198 1.227454103 GSDYSWSYQT(ph)PPS(ph)SPSSSSSR ddPTM_HeLa_CUDC101_4h_R1 2 GSDYSWSYQTPPSSPSSSSSR 21 0 Q765P7;A0A087WXN9;H3BPV0 Q765P7 MTSS1L MTSS1-like protein 2 0 GSDYSWS(0.006)Y(0.006)QT(0.975)PPS(0.242)S(0.242)PS(0.054)S(0.123)S(0.138)S(0.123)S(0.09)R;GSDYSWS(0.005)Y(0.002)QT(0.992)PPS(0.541)S(0.319)PS(0.056)S(0.048)S(0.015)S(0.013)S(0.008)R ; 78.451 0.0026849 9011300 2679.4 2443.1 2410.7 2402.1 2559.7 2461.4 2200.5 2058.16 2592.2 2520.2 TRUE FALSE FALSE 2365.324794 2518.369015 2541.029734 2500.068021 2370.876031 2414.452896 2285.374022 2292.452615 2485.348419 2505.209738 0.944162382 1.005252765 1.014298202 0.99794759 0.946378259 0.963772757 0.912248578 0.915074127 0.992071993 1 11.29071568 -4.921506635 1.441328273 0.979729928 0.907586552 0.60813787 0.02255474 0.352448894 1.249536368 0.004210379 0.025593679 1.20E-05 4.921506635 -0.072143376 RPTSNGVVSS(ph)PNSTSRPTLPVK ddPTM_HeLa_CUDC101_4h_R1 1 RPTSNGVVSSPNSTSRPTLPVK 22 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 RPT(0.004)S(0.004)NGVVS(0.298)S(0.691)PNS(0.001)T(0.001)S(0.001)RPT(0.001)LPVK 66.017 0.0056026 28941000 939.96 843.38 853.52 766.47 911.92 877.66 612.76 362.71 879.72 986.47 TRUE FALSE FALSE 829.7793137 869.3635381 899.663873 797.7299596 844.6494784 860.9200978 636.3943585 403.9994403 843.4575692 980.6024326 0.846193407 0.886560658 0.917460372 0.813510076 0.861357723 0.877950196 0.648983051 0.411991065 0.860142236 1 9.93752453 -4.0924163 0.985581191 0.915107962 3.51E-14 0.884342167 0.053651569 0.70162937 0.420357942 0.010488713 0.733280155 8.08E-05 4.0924163 -0.915107962 down IGEHTPS(ph)ALAIMENANVLAR ddPTM_HeLa_CUDC101_4h_R1 2 IGEHTPSALAIMENANVLAR 20 0 P04075;H3BQN4;J3KPS3;P04075-2;H3BPS8;H3BR04;H3BU78 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 IGEHT(0.412)PS(0.588)ALAIMENANVLAR;IGEHT(0.024)PS(0.976)ALAIMENANVLAR ; 104.23 0.00023551 8587100 1769.06 1732.92 1386.73 1785.5 1978.22 1639.03 1174.97 1361.88 1888.65 1783.59 TRUE FALSE FALSE 1561.693469 1786.309211 1461.700818 1858.320408 1832.290652 1607.768234 1220.288986 1516.910914 1810.799048 1772.981127 0.880829155 1.00751733 0.824431121 1.048133214 1.033451864 0.906816327 0.688269586 0.855570818 1.021330131 1 10.79196146 -4.921244626 6.419323337 0.952118363 0.774112077 0.495569187 0.078405333 0.133541698 8.66703879 0.010721009 0.032780104 1.20E-05 4.921244626 -0.178006286 SSSVGSSSSYPIS(ph)PAVSR ddPTM_HeLa_CUDC101_4h_R1 4 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR;SSSVGSS(0.001)S(0.009)S(0.003)YPIS(0.987)PAVSR ;;; 330.65 2.77E-169 724370000 5223.73 4807.46 4818.65 4823.98 5473.91 4400.47 3650.01 3495.37 5155.11 4316.6 TRUE FALSE FALSE 4611.412288 4955.572144 5079.160795 5020.722755 5070.110565 4316.538366 3790.792108 3893.268792 4942.614184 4290.924671 1.07468964 1.154896094 1.18369843 1.170079444 1.181589273 1.005969272 0.883444106 0.907326297 1.151876242 1 12.06707286 -4.919601404 4.245477336 1.076070821 0.89745577 0.581708352 0.070723096 0.156594076 5.327634012 0.012179261 0.039330987 1.20E-05 4.919601404 -0.178615051 GSS(ph)PTPPCSPVQPSK ddPTM_HeLa_CUDC101_4h_R1 3 GSSPTPPCSPVQPSK 15 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 0 GSS(0.999)PT(0.001)PPCSPVQPSK;GS(0.093)S(0.906)PT(0.001)PPCSPVQPSK;GS(0.173)S(0.757)PT(0.069)PPCSPVQPSK ;; 183.28 1.09E-10 190134000 11842.8 9996.8 11110.8 9756.33 10056.3 9035.22 7515.75 6545.62 9633.73 8984.39 TRUE FALSE FALSE 10454.60494 10304.78956 11711.48346 10154.23531 9314.466784 8862.888232 7805.634995 7290.746922 9236.623572 8930.950449 1.170603845 1.153828993 1.311336741 1.136971408 1.042942388 0.992379062 0.873998242 0.81634614 1.03422627 1 13.124598 -4.919374084 1.52128433 1.109792321 0.814207437 0.652337856 0.081864969 0.284804874 1.15103532 0.015007027 0.086752449 1.20E-05 4.919374084 -0.295584884 QPAQELS(ph)PTPGGTAHQALK ddPTM_HeLa_CUDC101_4h_R1 2 QPAQELSPTPGGTAHQALK 19 0 Q9UPN4-3;Q9UPN4-2;I3L2J8;Q9UPN4 Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa 1 0 QPAQELS(0.985)PT(0.015)PGGTAHQALK;QPAQELS(0.829)PT(0.164)PGGT(0.007)AHQALK ; 142.31 3.79E-05 298153000 4149.6 3522.4 3549.2 3589.8 4154.5 3725.4 3025.9 3223 3792.6 3798.6 TRUE FALSE FALSE 3663.190178 3630.920969 3741.080488 3736.20756 3848.030812 3654.344202 3142.609977 3589.893292 3636.267423 3776.005758 0.970123038 0.96157718 0.990750737 0.989460239 1.019074402 0.967780357 0.832257729 0.950711816 0.962993082 1 11.88264525 -4.918940281 7.680971774 0.986538259 0.892181289 0.581634821 0.031209611 0.102750652 8.383833437 0.003869239 0.011716499 1.21E-05 4.918940281 -0.09435697 HQEVQDQDPVFQGSDSSGYQS(ph)DHKK ddPTM_HeLa_CUDC101_4h_R1 1 HQEVQDQDPVFQGSDSSGYQSDHKK 25 1 Q3B726 Q3B726 TWISTNB DNA-directed RNA polymerase I subunit RPA43 1 0 HQEVQDQDPVFQGS(0.086)DS(0.086)S(0.086)GY(0.275)QS(0.468)DHKK 77.533 0.00029596 24664000 2594.2 2164.2 2055.3 2129.6 2486.2 2437.4 2416.4 2315.7 2223.3 2247 TRUE FALSE FALSE 2290.111809 2230.876437 2166.415735 2216.454293 2302.797979 2390.910656 2509.601357 2579.309928 2131.654633 2233.634744 1.025284825 0.998765104 0.969905998 0.992308299 1.030964434 1.070412547 1.123550466 1.154759047 0.954343425 1 11.12517757 -4.917344038 1.48594692 1.006539136 1.156186704 0.871102996 0.02229501 0.106938815 0.407914538 0.002755292 0.016355223 1.21E-05 4.917344038 0.149647567 DGPSS(ph)APAT(ph)PTKAPYSPTTSK ddPTM_HeLa_CUDC101_4h_R1 2 DGPSSAPATPTKAPYSPTTSK 21 1 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 2 0 DGPS(0.142)S(0.858)APAT(0.996)PT(0.002)KAPY(0.001)S(0.001)PTTSK;DGPS(0.216)S(0.801)APAT(0.969)PT(0.013)KAPY(0.001)SPTTSK ; 84.318 0.0016565 35933000 6670.8 5949.8 6037.9 5023 6338.1 5831.8 4742.3 5099.8 5390.1 5627.6 TRUE FALSE FALSE 5888.858936 6133.106286 6364.327138 5227.859651 5870.55099 5720.568131 4925.2121 5680.340618 5167.917797 5594.126785 1.052685998 1.096347387 1.137680175 0.934526487 1.049413289 1.022602517 0.880425541 1.015411491 0.923811346 1 12.44969724 -4.916001084 9.701949665 1.034124742 0.948148303 0.170619933 0.068948902 0.331616683 35.4533196 0.008196792 0.024665438 1.21E-05 4.916001084 -0.085976439 SRLT(ph)PVSPES(ph)SSTEEK ddPTM_HeLa_CUDC101_4h_R1 1 SRLTPVSPESSSTEEK 16 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 S(0.296)RLT(0.706)PVS(0.275)PES(0.649)S(0.065)S(0.007)T(0.002)EEK 145.82 0.0021267 180130000 11631 10640 10039 10567 11069 9555.5 7988.6 7072.6 10925 10397 TRUE FALSE FALSE 10267.63181 10967.80579 10581.73871 10997.96793 10252.46192 9373.244758 8296.722978 7877.716196 10474.66688 10335.15818 0.993466344 1.061213152 1.023858418 1.064131554 0.991998549 0.906928041 0.802766908 0.762225024 1.013498458 1 13.33527285 -4.914344322 1.894504129 1.009226584 0.764651797 0.93305835 0.025663288 0.075494588 0.509177646 0.004317115 0.020631152 1.22E-05 4.914344322 -0.244574786 QPPTAAGRPVDAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 QPPTAAGRPVDASPR 15 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 QPPTAAGRPVDAS(1)PR 58.626 0.040013 33601000 1836.3 1713.5 1685.5 1596.4 1689.2 1530.7 1529.1 597.23 1980.6 1921.4 TRUE FALSE FALSE 1621.051698 1766.290904 1776.623228 1661.508092 1564.591081 1501.504448 1588.077899 665.2162491 1898.95883 1909.971427 0.848730863 0.92477347 0.930183145 0.869912538 0.819169889 0.786139743 0.831466836 0.348285969 0.994234156 1 10.89933534 -4.089593947 1.396180971 0.912751758 6.17E-47 0.85205129 0.067793691 0.580217173 0.7361625 0.011203478 0.828070427 8.14E-05 4.089593947 -0.912751758 down RVSGPDPKPGSNCS(ph)PAQSVLSEVPS(ph)VPTNGMAK ddPTM_HeLa_CUDC101_4h_R1 1 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 2 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 2 0 RVS(0.011)GPDPKPGS(0.166)NCS(0.663)PAQS(0.237)VLS(0.144)EVPS(0.733)VPT(0.047)NGMAK 47.104 0.012185 47215000 3567.9 3050.3 2697 3003 3382.8 2488.4 2046.2 1703.2 3289.9 2495.4 TRUE FALSE FALSE 3149.676171 3144.276128 2842.807978 3125.47532 3133.257583 2440.937916 2125.122619 1897.085403 3154.28893 2480.55725 1.269745405 1.267568458 1.146036028 1.25998919 1.263126495 0.984028051 0.856711781 0.764781947 1.271604971 1 11.27644854 -4.914208984 2.661597309 1.160040736 0.79818923 0.736928877 0.093873885 0.149188179 2.092513002 0.017472615 0.066663289 1.22E-05 4.914208984 -0.361851507 GEAAAERPGEAAVASS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 GEAAAERPGEAAVASSPSK 19 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEAAAERPGEAAVAS(0.047)S(0.866)PS(0.087)K 124.04 2.86E-05 1935800000 7034.3 5888.7 5664.5 5422.6 4928.7 4985.1 4186 2359.2 5924.6 6782.6 TRUE FALSE FALSE 6209.750017 6070.123867 5970.740004 5643.757066 4565.11962 4890.017523 4347.455422 2627.761792 5680.38548 6742.256794 0.921019505 0.900310394 0.885569949 0.837072399 0.677090737 0.725279038 0.644807155 0.389745136 0.842505062 1 12.71901586 -4.08821649 0.362204301 0.983217339 8.62E-16 0.859293283 0.063345245 1.151142313 0.095367175 0.014417253 0.505455421 8.16E-05 4.08821649 -0.983217339 down QLEHVMDSAAEDPQS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 QLEHVMDSAAEDPQSPK 17 0 C9JKA9;Q9NS87-2;Q9NS87;Q9NS87-3;Q9NS87-4 C9JKA9 KIF15 Kinesin-like protein KIF15 1 0 QLEHVMDSAAEDPQS(1)PK;QLEHVMDSAAEDPQS(1)PK ; 85.884 0.0058325 17681100 7990.3 7033.3 6453.2 7622.5 7985.1 8082.4 7969.6 7543.4 7697.3 8272 TRUE FALSE FALSE 7053.689147 7249.987636 6802.079512 7933.378497 7396.055082 7928.241686 8276.990142 8402.110165 7380.014036 8222.797776 0.857821065 0.881693535 0.827222035 0.964802822 0.899457251 0.964178118 1.006590502 1.021806737 0.897506449 1 13.00541363 -4.914180718 2.413357633 0.919827578 1.018473762 0.437254317 0.048398556 0.314575318 3.596846319 0.009246739 0.037251091 1.22E-05 4.914180718 0.098646184 ALQT(ph)SPQPPEGPGLPR ddPTM_HeLa_CUDC101_4h_R1 1 ALQTSPQPPEGPGLPR 16 0 H7C398;A0A2R8YGT1;F8W9A8;B7WPL9;Q6PFW1-5;Q6PFW1-7;Q6PFW1-4;Q6PFW1-3;Q6PFW1-2;Q6PFW1 H7C398 PPIP5K1 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 1 0 ALQT(0.661)S(0.339)PQPPEGPGLPR 130.47 0.0023138 12009000 2090.7 2038.9 1662.3 2015.6 2048.6 1732.2 1472.3 1284 1863.2 1914.5 TRUE FALSE FALSE 1845.631315 2101.716092 1752.168966 2097.80488 1897.478859 1699.161171 1529.087104 1430.16537 1786.398107 1903.112469 0.969796239 1.104357271 0.920685979 1.102302105 0.997039792 0.892832767 0.803466495 0.751487573 0.938671853 1 10.89414511 -4.913875041 2.071717362 0.999150657 0.762279908 0.71704739 0.05759245 0.122807302 1.010774862 0.007489555 0.033414468 1.22E-05 4.913875041 -0.236870749 QATPGVPAQQS(ph)PSM ddPTM_HeLa_CUDC101_4h_R1 1 QATPGVPAQQSPSM 14 0 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 1 0 QATPGVPAQQS(0.966)PS(0.034)M 73.156 0.039963 5055900 1647.4 1386 1529.5 1344.2 1781 1449.1 1286.3 1228.3 1590.6 1415.6 TRUE FALSE FALSE 1454.294269 1428.701017 1612.189396 1399.022286 1649.619178 1421.460832 1335.913022 1368.124707 1525.034795 1407.179948 1.033481376 1.015293758 1.145688153 0.994202829 1.172287297 1.010148584 0.949354788 0.972245738 1.083752506 1 10.45859111 -4.913312426 5.719471367 1.0354291 0.96272253 0.239710838 0.060772379 0.246266162 12.6995411 0.008260666 0.025537448 1.22E-05 4.913312426 -0.07270657 RWIEIMS(ph)S(ph)T(ph)NTMPVSSCTPK ddPTM_HeLa_CUDC101_4h_R1 1 RWIEIMSSTNTMPVSSCTPK 20 1 A0A182DWE8;Q6ZTR5-6;Q6ZTR5 A0A182DWE8 CXorf22 Uncharacterized protein CXorf22 3 0 RWIEIMS(0.978)S(0.979)T(0.502)NT(0.505)MPVS(0.028)S(0.004)CT(0.004)PK 51.089 0.0028397 0 640.2 758.19 605.35 515.49 714.42 601.26 460.96 459.37 660.45 699.7 TRUE FALSE FALSE 565.1567265 781.5489352 638.0770521 536.5139103 661.7186599 589.7919673 478.7393816 511.662824 633.2259715 695.5381533 0.812545974 1.123660768 0.917386126 0.771365176 0.951376509 0.847964938 0.688300677 0.735635884 0.910411555 1 9.441985845 -4.91330487 3.671574884 0.917619407 0.712169416 0.458510673 0.091904179 0.174362194 4.558150927 0.014462458 0.04860587 1.22E-05 4.91330487 -0.20544999 ALAEEASEEELPS(ph)DVDLNDPYFAEEVK ddPTM_HeLa_CUDC101_4h_R1 4 ALAEEASEEELPSDVDLNDPYFAEEVK 27 0 Q9H501 Q9H501 ESF1 ESF1 homolog 1 0 ALAEEAS(0.044)EEELPS(0.956)DVDLNDPYFAEEVK;ALAEEASEEELPS(1)DVDLNDPYFAEEVK;ALAEEAS(0.001)EEELPS(0.992)DVDLNDPY(0.007)FAEEVK;ALAEEAS(0.077)EEELPS(0.85)DVDLNDPY(0.073)FAEEVK ;;; 128.01 4.81E-11 17325800 7041.15 7644.33 6030.34 5921.64 7317.42 6441.61 5384.55 5265.89 8018.07 6842.87 TRUE FALSE FALSE 6215.797071 7879.842747 6356.358421 6163.150075 6777.628505 6318.747022 5592.233897 5865.337632 7687.561761 6802.168305 0.913796424 1.158431017 0.934460621 0.906056686 0.996392356 0.928931296 0.822125188 0.8622747 1.130163415 1 12.73177899 -4.910179734 4.118448719 0.969740826 0.843009691 0.318537236 0.085071239 0.181114647 5.713216999 0.009818442 0.032069866 1.23E-05 4.910179734 -0.126731135 AISPT(ph)SSSR ddPTM_HeLa_CUDC101_4h_R1 3 AISPTSSSR 9 0 A0A0U1RRL2;B1AM27;O14795;O14795-2 A0A0U1RRL2 UNC13B Protein unc-13 homolog B 1 0 AIS(0.369)PT(0.631)SSSR;AIS(0.316)PT(0.682)S(0.002)SSR;AIS(0.272)PT(0.72)S(0.008)SSR ;; 123.75 0.023143 142036900 13192.8 9497 11105.7 11260.8 10709.4 8386.8 7783.5 5290.2 11117.3 9961.1 TRUE FALSE FALSE 11646.35998 9789.591313 11706.10773 11720.0641 9919.388898 8226.835763 8083.712202 5892.414984 10659.04019 9901.850934 1.176180096 0.988662764 1.182214094 1.183623564 1.00177118 0.830838175 0.816383952 0.595082174 1.076469466 1 13.27348252 -4.908402549 1.254579855 1.091805487 0.622235477 0.814466868 0.078011183 0.22206988 0.552826881 0.013805845 0.099119363 1.23E-05 4.908402549 -0.46957001 HIEDTGS(ph)TPS(ph)IGENDLK ddPTM_HeLa_CUDC101_4h_R1 2 HIEDTGSTPSIGENDLK 17 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 2 0 HIEDT(0.047)GS(0.936)T(0.017)PS(1)IGENDLK;HIEDT(0.071)GS(0.923)T(0.013)PS(0.992)IGENDLK ; 121.72 0.0029127 25002000 6924.6 6152.5 5772.8 5402.8 6911.1 6339.8 7045.4 5675.2 6427.1 6171.5 TRUE FALSE FALSE 6112.908885 6342.051232 6084.89503 5623.149537 6401.281922 6218.878878 7317.143438 6321.241828 6162.172218 6134.791644 0.996433007 1.033784291 0.991866616 0.916599921 1.043439173 1.013706616 1.192728924 1.03039226 1.004463163 1 12.58279863 -4.905393238 8.330837364 0.997993803 1.111184107 0.463729467 0.048213996 0.139322809 10.89636792 0.005969037 0.018027964 1.24E-05 4.905393238 0.113190305 EITALAPST(ph)MK ddPTM_HeLa_CUDC101_4h_R1 1 EITALAPSTMK 11 0 P60709;P63267-2;A0A2R8YFE2;P63267;P68133;P68032;P62736;A6NL76;P63261 P60709;P63267;P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 EITALAPS(0.26)T(0.74)MK 110.8 0.032639 28213000 8146.2 7536.8 6408 6747.2 7201 7859.1 7990.5 7779 6062 6703.3 TRUE FALSE FALSE 7191.314785 7768.999875 6754.435863 7022.37998 6669.796576 7709.200762 8298.696262 8664.529916 5812.121794 6663.428473 1.079221427 1.165916301 1.013657742 1.053868892 1.00095568 1.156942075 1.245409371 1.300311086 0.872241942 1 12.70204895 -4.904914062 2.313328708 1.045470545 1.285922972 0.648452114 0.072450062 0.110697747 1.15615683 0.007599592 0.031787928 1.24E-05 4.904914062 0.240452426 RSEACPCQPDSGS(ph)PLPAEEEK ddPTM_HeLa_CUDC101_4h_R1 2 RSEACPCQPDSGSPLPAEEEK 21 1 A0A0G2JMS7;A0A0G2JNZ2;A0A669KB89;Q14160-2;Q14160;A0A0G2JPP5;Q14160-3 A0A0G2JMS7 SCRIB Protein scribble homolog 1 0 RSEACPCQPDS(0.177)GS(0.823)PLPAEEEK;RSEACPCQPDS(0.113)GS(0.887)PLPAEEEK ; 93.147 0.00025163 27581000 3616.1 3206.9 2472.5 3056.7 2728.8 2546.8 1988.56 1662.4 3035.8 2614.53 TRUE FALSE FALSE 3192.22624 3305.700788 2606.170829 3181.365438 2527.501861 2498.224033 2065.259425 1851.640896 2910.663039 2598.978659 1.228261813 1.271923021 1.002767306 1.22408294 0.97249812 0.961232992 0.794642702 0.712449442 1.119925717 1 11.34372907 -4.904186923 1.156911801 1.121980455 0.683795993 0.725849158 0.092111329 0.336846151 0.679558136 0.017086006 0.134744197 1.25E-05 4.904186923 -0.438184462 VAAAAGSGPS(ph)PPGS(ph)PGHDR ddPTM_HeLa_CUDC101_4h_R1 1 VAAAAGSGPSPPGSPGHDR 19 0 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 2 0 VAAAAGS(0.158)GPS(0.842)PPGS(1)PGHDR 145.33 0.00050099 5394600 2037.7 1652.5 1130.9 1828.5 1348.1 1329.3 1067.6 849.28 1088.8 1245.1 TRUE FALSE FALSE 1798.843895 1703.411566 1192.039875 1903.074133 1248.653349 1303.945817 1108.77769 945.9586023 1043.919203 1237.69409 1.453383279 1.376278339 0.96311349 1.537596527 1.008854578 1.053528354 0.895841467 0.76429112 0.843438788 1 10.27343906 -4.902259589 1.244493442 1.22960571 0.758234824 0.270627476 0.217909884 0.532089218 1.293503629 0.032539197 0.238153146 1.25E-05 4.902259589 -0.471370886 ADLNQGIGEPQS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 2 ADLNQGIGEPQSPSR 15 0 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 ADLNQGIGEPQS(0.995)PS(0.005)R;ADLNQGIGEPQS(1)PSR ; 223.15 1.47E-32 244050000 6682.7 5684.4 6164 5404.9 5310.7 5004.8 3734.5 3046.7 5796.8 5962.4 TRUE FALSE FALSE 5899.364036 5859.529626 6497.244485 5625.335184 4918.940241 4909.341779 3878.540916 3393.524013 5557.85345 5926.93538 0.995348128 0.988627216 1.09622327 0.949113635 0.829929791 0.828310326 0.654392307 0.572559644 0.937728032 1 12.53307061 -4.902254176 0.881976388 1.00430954 0.509561183 0.904988588 0.048216655 0.191461981 0.190901559 0.007037765 0.07360137 1.25E-05 4.902254176 -0.494748357 RPTSNGVVSSPNS(ph)TSRPTLPVK ddPTM_HeLa_CUDC101_4h_R1 1 RPTSNGVVSSPNSTSRPTLPVK 22 2 Q7Z422-4;Q7Z422-5;Q7Z422;Q7Z422-2;Q7Z422-3 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 RPTSNGVVS(0.004)S(0.015)PNS(0.278)T(0.278)S(0.278)RPT(0.146)LPVK 40.689 0.039123 45379000 4374.1 3178.1 3329.5 3826.9 3711 3505.1 2986.3 1392.4 3822.2 3688.3 TRUE FALSE FALSE 3861.374629 3276.013494 3509.502841 3982.977523 3437.246923 3438.246057 3101.482591 1550.905188 3664.647298 3666.361828 1.053189731 0.893532512 0.95721672 1.086356915 0.937508922 0.937781435 0.845929217 0.42300931 0.999532362 1 11.84013345 -4.088169137 1.355798891 1.009260909 2.20E-16 0.902761157 0.055159733 0.405605397 0.481288981 0.008405446 0.624256477 8.16E-05 4.088169137 -1.009260909 down EAPPPVLLT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 EAPPPVLLTPK 11 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 EAPPPVLLT(1)PK;EAPPPVLLT(1)PK;EAPPPVLLT(1)PK;EAPPPVLLT(1)PK ;;; 141.34 0.0064735 68034000 12135.5 11730.4 10877.5 10574.1 12639.5 12673 12677.3 12246.8 11454.7 11418.4 TRUE FALSE FALSE 10712.99509 12091.79972 11465.57055 11005.3575 11707.10927 12431.28364 13166.26771 13640.92621 10982.53242 11350.48285 0.943836067 1.065311483 1.010139454 0.969593774 1.031419493 1.095220688 1.159974239 1.201792592 0.967582839 1 13.47046605 -4.901444257 0.965164866 0.981074936 1.232526423 0.845553027 0.031945005 0.267021524 0.336071494 0.005762794 0.055231353 1.25E-05 4.901444257 0.251451487 TAS(ph)LSNQECQLYPR ddPTM_HeLa_CUDC101_4h_R1 1 TASLSNQECQLYPR 14 0 Q9Y675 Q9Y675 SNURF SNRPN upstream reading frame protein 1 0 T(0.212)AS(0.781)LS(0.007)NQECQLYPR 145.7 1.70E-05 0 748.62 732.76 644.03 617.18 693.85 829.18 907.05 838.25 675.65 863.57 TRUE FALSE FALSE 660.8678984 755.3354671 678.8482099 642.3512681 642.6660678 813.364773 942.0352223 933.6729917 647.799421 858.4334472 0.769853389 0.879899857 0.790798881 0.748283131 0.748649846 0.94749893 1.097388767 1.087647499 0.754629754 1 9.745562479 -4.900023364 3.830283041 0.860696145 1.092315006 0.60973121 0.083739709 0.158627351 4.376015444 0.015128136 0.050641953 1.26E-05 4.900023364 0.231618861 IVDS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 2 IVDSPEK 7 0 E9PQC4;Q9BZD4 E9PQC4 NUF2 Kinetochore protein Nuf2 1 0 IVDS(1)PEK;IVDS(1)PEK ; 112.3 0.0136 121663000 12295.7 8113.5 9373.2 9974.3 7505.6 7650.5 7641.9 4885.5 9723.5 10847.5 TRUE FALSE FALSE 10854.41669 8363.467318 9879.943544 10381.09507 6951.926841 7504.579459 7936.650643 5441.645572 9322.693214 10782.97859 1.00662508 0.775617539 0.916253655 0.962729823 0.644713034 0.695965349 0.736035093 0.504651431 0.864574954 1 13.39646813 -4.899847267 0.371029198 1.01840037 0.36282714 0.621269057 0.097803022 1.367491596 0.18120671 0.028561681 0.371371936 1.26E-05 4.899847267 -0.65557323 HGLQLGAQS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 2 HGLQLGAQSPGR 12 0 Q8N1G0;A6PVV7 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR ; 161.87 9.83E-05 90769000 2488.1 1920.13 2436.57 2039 2259.7 2195.38 1911.72 1769.61 2255.02 2236.4 TRUE FALSE FALSE 2196.44869 1979.286929 2568.298344 2122.159233 2093.006433 2153.506784 1985.455681 1971.055249 2162.067121 2223.097793 0.988012626 0.890328323 1.155279067 0.954595538 0.941481944 0.96869638 0.893103167 0.886625526 0.972547014 1 11.1183557 -4.898666779 1.051136556 0.995308263 0.870871581 0.265292798 0.063902407 0.755254002 1.184497748 0.009238752 0.081460945 1.26E-05 4.898666779 -0.124436682 TQASS(ph)SPAALKPPAGR ddPTM_HeLa_CUDC101_4h_R1 1 TQASSSPAALKPPAGR 16 1 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 0 TQAS(0.12)S(0.44)S(0.44)PAALKPPAGR 111.62 0.00084419 17898000 2578.6 1995.4 2330.5 2335.7 2633.2 2170.5 1664.4 1568 2328.8 2441.6 TRUE FALSE FALSE 2276.340417 2056.875909 2456.493879 2430.959942 2438.954082 2129.101329 1728.596466 1746.494782 2232.805878 2427.077255 0.93789368 0.847470308 1.012120185 1.001599738 1.004893469 0.877228496 0.712213203 0.719587635 0.919956657 1 11.24500432 -4.898516168 3.098607778 0.967817053 0.712037061 0.796235864 0.048766512 0.077267713 1.461769852 0.007137808 0.025778444 1.26E-05 4.898516168 -0.255779992 IVEPEVVGES(ph)DSEVEGDAWR ddPTM_HeLa_CUDC101_4h_R1 2 IVEPEVVGESDSEVEGDAWR 20 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 0 IVEPEVVGES(0.863)DS(0.137)EVEGDAWR;IVEPEVVGES(0.899)DS(0.101)EVEGDAWR ; 249.49 7.19E-57 64838200 3309.4 3062.2 2481.3 2658.8 2883.9 2384.7 1986.2 1793.16 4095.3 3068 TRUE FALSE FALSE 2921.477149 3156.542752 2615.446584 2767.237356 2671.160443 2339.215821 2062.808399 1997.286086 3926.490001 3049.7514 0.95793944 1.035016412 0.857593371 0.907364894 0.875861699 0.767018525 0.676385754 0.654901277 1.287478711 1 11.57447593 -4.897160918 0.553437138 0.986720131 0.525291457 0.662408636 0.102610582 0.415171348 0.130098366 0.007580445 0.107690634 1.27E-05 4.897160918 -0.461428674 ASIGQS(ph)PGLPSTTFK ddPTM_HeLa_CUDC101_4h_R1 2 ASIGQSPGLPSTTFK 15 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 ASIGQS(1)PGLPSTTFK;ASIGQS(1)PGLPSTTFK ; 258.14 9.13E-70 155835000 8414 7348.1 6817.3 7223.1 7645.7 7587.7 7364.1 6845.8 7231.3 7267.8 TRUE FALSE FALSE 7427.723675 7574.486251 7185.863859 7517.689239 7081.691943 7442.977264 7648.135804 7625.0982 6933.222753 7224.570802 1.028119715 1.048434081 0.994642319 1.040572436 0.980223205 1.030231064 1.058628396 1.055439611 0.959672615 1 12.81869617 -4.896728864 4.307222328 1.014728535 1.056701467 0.341149986 0.026193279 0.151449509 4.973690542 0.002763675 0.008986676 1.27E-05 4.896728864 0.041972933 NAS(ph)ASFQELEDKK ddPTM_HeLa_CUDC101_4h_R1 1 NASASFQELEDKK 13 1 Q99543-2;Q99543;F2Z3H0;F2Z3N9;H7C3L7 Q99543-2 DNAJC2 "DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed" 1 0 NAS(0.987)AS(0.013)FQELEDKK 98.077 0.0058334 40262000 3861.2 2902.7 3069.3 3247.4 2864.4 2770.6 2405.4 1903.7 3437.5 3251.5 TRUE FALSE FALSE 3408.595989 2992.128746 3235.235642 3379.843008 2653.098919 2717.755421 2498.177084 2120.409513 3295.804795 3232.159933 1.054587663 0.9257366 1.000951595 1.04569176 0.820843948 0.840848064 0.772912583 0.656034836 1.019691124 1 11.65828287 -4.893202569 0.673232003 1.023267293 0.591742594 0.846948365 0.050077872 0.427988196 0.214142719 0.009102078 0.119769728 1.28E-05 4.893202569 -0.431524699 GTYFDAIIT(ph)DPPYGIRES(ph)T(ph)RRT(ph)GSQK ddPTM_HeLa_CUDC101_4h_R1 1 GTYFDAIITDPPYGIRESTRRTGSQK 26 3 Q7Z4G4-2;Q7Z4G4 Q7Z4G4-2 TRMT11 tRNA (guanine(10)-N2)-methyltransferase homolog 4 0 GT(0.232)Y(0.212)FDAIIT(0.28)DPPY(0.282)GIRES(0.991)T(0.99)RRT(0.859)GS(0.154)QK 52.483 0.0017154 0 494.3 502.25 522.92 463.58 553.94 463.14 392.2 374.58 595.63 482.07 TRUE FALSE FALSE 436.3589033 517.7237272 551.1906369 482.4867962 513.0769498 454.3063761 407.3272854 417.2206731 571.0778793 479.2026262 0.910593723 1.08038583 1.150224575 1.006853406 1.070688936 0.948046507 0.850010545 0.870656065 1.19172527 1 8.904492004 -4.892497869 4.291212588 0.991950489 0.861160289 0.281304194 0.092915382 0.205262798 6.663479775 0.011652065 0.037989773 1.28E-05 4.892497869 -0.1307902 S(ph)SEDIIK ddPTM_HeLa_CUDC101_4h_R1 1 SSEDIIK 7 0 O14639-3;O14639-5;J3QSX6;O14639-4;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 1 0 S(0.987)S(0.013)EDIIK 105.1 0.015999 18196000 5442.1 5292.1 4699.6 5085.6 5246.2 4685.4 4018 3504 4964.1 5365.7 TRUE FALSE FALSE 4804.185288 5455.143328 4953.674592 5293.01275 4859.198278 4596.033801 4172.975606 3902.881196 4759.477697 5333.784578 0.900708534 1.022752841 0.928735407 0.992355929 0.911022597 0.861683432 0.782366731 0.731728314 0.89232657 1 12.38094384 -4.892015092 1.293832193 0.95840335 0.721809417 0.789172465 0.040595918 0.200986969 0.536745363 0.006474069 0.046282227 1.28E-05 4.892015092 -0.236593933 SSSSSASPS(ph)SPSSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSSSASPSSPSSR 14 0 E9PK91;Q9NYF8-3;H0YF63;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 SSSSSAS(0.016)PS(0.462)S(0.462)PS(0.054)S(0.007)R 137.09 0.00061592 561500 397.12 140.45 553.65 494.57 235.63 210.09 198.8 0 370.89 482.5 TRUE FALSE FALSE 350.5701956 144.777098 583.5819937 514.7407023 218.2480443 206.0828833 206.4677826 0 355.6017572 479.6300685 0.730917886 0.301851588 1.216733545 1.073203571 0.455034116 0.429670483 0.430472975 0 0.741408391 1 8.905778296 -4.886307709 0.923419929 0.859872158 1.08E-09 0.488852655 0.259229742 0.638256267 0.709100957 0.042922247 0.441443625 1.30E-05 4.886307709 -0.859872156 FQSDSSSYPTVDSNS(ph)LLGQSR ddPTM_HeLa_CUDC101_4h_R1 1 FQSDSSSYPTVDSNSLLGQSR 21 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 FQSDSSSYPTVDSNS(1)LLGQSR 318.43 5.74E-195 0 2063.8 1704.5 1569.8 1628.2 2488.2 2339.1 2869.5 2826.8 1343.8 1976.8 TRUE FALSE FALSE 1821.884493 1757.013625 1654.668136 1694.605034 2304.650443 2294.485565 2980.177576 3148.591486 1288.407995 1965.041906 0.927147908 0.894135448 0.842052341 0.862376028 1.172825087 1.167652231 1.516597467 1.602302463 0.655664386 1 10.94034436 -4.885715453 1.24572266 0.944962028 1.661778306 0.832366693 0.117637721 0.132442842 0.319964617 0.012079786 0.090923292 1.30E-05 4.885715453 0.716816278 DSAAPS(ph)PIPGADNLSADPVVSPPTSIPFK ddPTM_HeLa_CUDC101_4h_R1 2 DSAAPSPIPGADNLSADPVVSPPTSIPFK 29 0 Q5T1M5;Q5T1M5-2;Q5T1M5-3 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 DS(0.014)AAPS(0.878)PIPGADNLS(0.105)ADPVVS(0.003)PPTSIPFK;DS(0.03)AAPS(0.968)PIPGADNLS(0.002)ADPVVSPPTSIPFK ; 115.2 5.23E-11 19061900 28259.5 23548.3 21134.3 20958.7 23392 19600.8 17473.1 14288.7 24714.6 24033.4 TRUE FALSE FALSE 24946.96425 24273.79521 22276.88419 21813.48638 21666.41876 19226.9474 18147.04332 15915.26785 23695.85373 23890.44827 1.044223364 1.016046034 0.932459866 0.913063084 0.906907167 0.804796427 0.75959409 0.666177029 0.991854714 1 14.5441463 -4.885066313 0.554591518 1.023214686 0.568767881 0.953306137 0.025320428 0.332629998 0.103964953 0.00590081 0.085294828 1.30E-05 4.885066313 -0.454446805 SSS(ph)PEAMDPPPPK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPEAMDPPPPK 13 0 K7ERU0;K7ENY2;Q9UK33 K7ERU0 ZNF580 Zinc finger protein 580 1 0 S(0.078)S(0.078)S(0.844)PEAMDPPPPK 130.1 7.21E-05 0 2913.3 2354.6 2377.5 2431.4 2595.2 2202.9 1513.5 1377 2699.3 2724.9 TRUE FALSE FALSE 2571.80739 2427.142435 2506.034842 2530.563001 2403.757266 2160.883353 1571.876202 1533.752114 2588.033711 2708.692174 0.949464622 0.896056945 0.92518259 0.934237942 0.887423565 0.797758924 0.580308171 0.56623345 0.955455085 1 11.40338073 -4.884222704 1.054749305 0.96554043 0.49085707 0.946764559 0.033891453 0.131498839 0.206209647 0.006049372 0.054525082 1.31E-05 4.884222704 -0.47468336 TAESQTPT(ph)PSATSFFSGK ddPTM_HeLa_CUDC101_4h_R1 1 TAESQTPTPSATSFFSGK 18 0 P55265-5;P55265;P55265-4;A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ITG9;A0A3B3ISX1 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 0 TAES(0.001)QT(0.134)PT(0.52)PS(0.343)AT(0.002)SFFSGK 118.46 0.00046502 9148200 723.95 603.13 709.1 662.34 804.61 827.88 855.2 852.21 829.93 759.1 TRUE FALSE FALSE 639.0896784 621.7117204 747.4360909 689.3530881 745.2555233 812.0895683 888.1853505 949.2221416 795.7199341 754.5848394 0.846942113 0.823912286 0.990526249 0.913552794 0.987636491 1.076207109 1.177051677 1.257939587 1.054513545 1 9.559539305 -4.88275741 1.101824902 0.920220432 1.285562354 0.733942057 0.066689628 0.279233215 0.49015638 0.010599761 0.091466598 1.31E-05 4.88275741 0.365341921 GQSQLSNPT(ph)DDSWK ddPTM_HeLa_CUDC101_4h_R1 1 GQSQLSNPTDDSWK 14 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 GQSQLS(0.049)NPT(0.951)DDSWK 152.11 0.00085809 36923000 4475.9 3401.7 3190.5 3524 3997.9 3258.9 2707.4 2472.8 3438.9 2917.6 TRUE FALSE FALSE 3951.241787 3506.502345 3362.988081 3667.723952 3702.982882 3196.741912 2811.825325 2754.293557 3297.147086 2900.245985 1.362381607 1.209036186 1.159552706 1.264625129 1.276782349 1.102231303 0.969512703 0.949675845 1.136850841 1 11.50195955 -4.882183581 3.276973137 1.190213414 0.95558839 0.521619537 0.091516207 0.222577969 4.650252984 0.019532042 0.069925285 1.31E-05 4.882183581 -0.234625025 ELQGDGPPS(ph)SPTNDPTVK ddPTM_HeLa_CUDC101_4h_R1 2 ELQGDGPPSSPTNDPTVK 18 0 Q12873-2;Q12873;Q12873-3;A0A5F9ZHX5 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 0 ELQGDGPPS(0.333)S(0.333)PT(0.333)NDPTVK;ELQGDGPPS(0.465)S(0.445)PT(0.09)NDPTVK ; 240.61 3.01E-44 83147000 15129.9 12003.7 12816.9 13176.3 13915.5 13506.6 13751.7 12012.7 13956.3 13157.7 TRUE FALSE FALSE 13356.39606 12373.51977 13509.82038 13713.68647 12888.98129 13248.98411 14282.10768 13380.17721 13381.01541 13079.43742 1.021175119 0.94602844 1.032905312 1.048492074 0.985438508 1.012962843 1.091951223 1.022993328 1.023057413 1 13.67501287 -4.882106148 8.679035531 1.008264669 1.057253673 0.287469455 0.030747511 0.211920057 15.09306823 0.003993797 0.012050996 1.31E-05 4.882106148 0.048989005 QSSGASSSS(ph)FSSSR ddPTM_HeLa_CUDC101_4h_R1 4 QSSGASSSSFSSSR 14 0 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;F6S8Q4;A0A2R8Y645;O00571;O00571-2;A0A2U3TZJ9;A0A0D9SFB3;A0A0D9SF53;A0A0D9SG12;A0A2R8YF78;A0A2R8YDT5;A0A2R8Y7T2;A0A0J9YVQ7;A0A087WVZ1 A0A2R8Y5G6 DDX3X ATP-dependent RNA helicase DDX3X 1 0 QSSGAS(0.001)S(0.001)S(0.004)S(0.994)FSSSR;QSSGASSS(0.003)S(0.996)FS(0.001)SSR;QSSGAS(0.039)S(0.058)S(0.029)S(0.874)FSSSR;QSSGAS(0.114)S(0.064)S(0.025)S(0.796)FSSSR ;;; 228.49 2.84E-33 60199200 10411.1 8111.9 8257.3 9099.6 9170.7 9996.8 12833 10444.8 6876.25 9060.5 TRUE FALSE FALSE 9190.72664 8361.818024 8703.714615 9470.72102 8494.195732 9806.127696 13327.97311 11633.79381 6592.808065 9006.607743 1.020442646 0.928409259 0.966369899 1.051530309 0.943107102 1.088770376 1.479799442 1.291695402 0.731996802 1 13.13676812 -4.881733759 4.930262277 1.000248161 1.382628586 0.728838958 0.101823046 0.040817488 1.572572142 0.007105974 0.022571637 1.31E-05 4.881733759 0.382380425 EVAENQQNQSSDPEEEKGSQPPPAAES(ph)QSSLRR ddPTM_HeLa_CUDC101_4h_R1 2 EVAENQQNQSSDPEEEKGSQPPPAAESQSSLRR 33 2 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;E9PII3;A0A2R8Y5B3;E9PJP4;E9PQD2;E9PIG0;E9PRG1;E9PQN0 O43491 EPB41L2 Band 4.1-like protein 2 1 0 EVAENQQNQSSDPEEEKGS(0.001)QPPPAAES(0.333)QS(0.333)S(0.333)LRR;EVAENQQNQSSDPEEEKGS(0.001)QPPPAAES(0.333)QS(0.333)S(0.333)LRR ; 70.229 2.77E-06 62323000 3309.8 2658.4 2354.9 2771.5 3086.2 3509.5 3580.5 3625.7 2355.3 3212.9 TRUE FALSE FALSE 2921.830261 2740.302153 2482.213017 2884.533749 2858.537175 3442.562135 3718.601084 4038.435032 2258.213537 3193.789528 0.914847467 0.858009624 0.777199936 0.903169644 0.895029917 1.077892611 1.164322524 1.264464987 0.707063981 1 11.64105353 -4.881583231 1.961759888 0.92898289 1.243024848 0.668715368 0.094064418 0.151775053 1.101696368 0.011321428 0.055144209 1.31E-05 4.881583231 0.314041959 NSS(ph)GPQSGWMK ddPTM_HeLa_CUDC101_4h_R1 1 NSSGPQSGWMK 11 0 F8VXG7;Q99590-2;Q99590 F8VXG7 SCAF11 Protein SCAF11 1 0 NS(0.216)S(0.774)GPQS(0.01)GWMK 100.73 0.0016787 0 3343.4 3061.6 2848.9 3161.6 3157.8 2703.7 2157.6 1879.5 2545.4 2906.8 TRUE FALSE FALSE 2951.49172 3155.924267 3002.920151 3290.543714 2924.855385 2652.131427 2240.819355 2093.454683 2440.477535 2889.510224 1.02145052 1.092200415 1.039248841 1.138789434 1.012232233 0.917848085 0.775501445 0.724501566 0.844599031 1 11.49660926 -4.876543866 2.042718815 1.028986725 0.727841566 0.694136615 0.071748975 0.092331318 0.733146261 0.006883865 0.032698372 1.33E-05 4.876543866 -0.301145159 SSSMSYVDGFIGT(ph)WPK ddPTM_HeLa_CUDC101_4h_R1 1 SSSMSYVDGFIGTWPK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 SSSMSYVDGFIGT(1)WPK 116.86 0.0037117 13930000 1213.5 1198.8 1075.7 1414.9 1020.7 1090 898.41 737 776.17 1253.3 TRUE FALSE FALSE 1071.25537 1235.733607 1133.855596 1472.605738 945.4049945 1069.210066 933.0619746 820.8971009 744.1759441 1245.845316 0.859862261 0.991883656 0.91010945 1.182013304 0.758846209 0.858220561 0.748938863 0.658907724 0.597326116 1 10.28290924 -4.876449861 1.222787393 0.946892708 0.65676647 0.199714215 0.148374055 0.432745903 0.991511765 0.015320885 0.119602609 1.33E-05 4.876449861 -0.290126238 VS(ph)EGGPAEIAGLQIGDK ddPTM_HeLa_CUDC101_4h_R1 4 VSEGGPAEIAGLQIGDK 17 0 O14907 O14907 TAX1BP3 Tax1-binding protein 3 1 0 VS(1)EGGPAEIAGLQIGDK;VS(1)EGGPAEIAGLQIGDK;VS(1)EGGPAEIAGLQIGDK;VS(1)EGGPAEIAGLQIGDK ;;; 238.19 1.15E-43 30260800 4409.51 3684.32 3444.89 3923.21 4497.8 4199.26 4114.88 4015.52 3978.64 4023.87 TRUE FALSE FALSE 3892.633922 3797.829532 3631.131174 4083.215461 4166.006255 4119.166112 4273.5923 4472.630566 3814.638775 3999.935842 0.97317409 0.949472612 0.907797354 1.020820239 1.041518269 1.029808046 1.068415212 1.118175576 0.95367499 1 11.96576114 -4.874239374 0.87976478 0.979716823 1.127356283 0.708888443 0.032018756 0.52907891 0.514325492 0.005555983 0.061137794 1.34E-05 4.874239374 0.14763946 S(ph)CPERHYWAQGK ddPTM_HeLa_CUDC101_4h_R1 1 SCPERHYWAQGK 12 1 P26842 P26842 CD27 CD27 antigen 1 0 S(1)CPERHYWAQGK 64.224 0.039299 5297100 1983.7 1229.6 1062.1 1258.7 1723.6 1736.2 1935.3 1691.7 1764.3 1783.7 TRUE FALSE FALSE 1751.173693 1267.482519 1119.520339 1310.035227 1596.453462 1703.084878 2009.945169 1884.27629 1691.574807 1773.090473 0.987639221 0.71484368 0.631394932 0.738842855 0.90037902 0.960517753 1.133582973 1.062707357 0.954026223 1 10.79205044 -4.873914133 4.692583053 0.919972421 1.097112897 0.267798049 0.131730208 0.287018494 10.4116208 0.022906288 0.073670269 1.34E-05 4.873914133 0.177140477 ELLTTMGDRFT(ph)DEEVDELYR ddPTM_HeLa_CUDC101_4h_R1 1 ELLTTMGDRFTDEEVDELYR 20 1 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 1 0 ELLT(0.005)T(0.017)MGDRFT(0.978)DEEVDELYR 86.179 0.0029929 14327000 1184.3 779.3 1073 856.14 948.03 768.28 680.95 500.97 842.86 901.68 TRUE FALSE FALSE 1045.478149 803.3093093 1131.009626 891.0570898 878.0957156 753.626339 707.2144696 557.9983998 808.1169541 896.3167673 1.166415923 0.896233719 1.261841424 0.994131899 0.979671192 0.840803571 0.789022916 0.622545979 0.901597497 1 9.807864875 -4.873856012 0.945118195 1.077293346 0.591277913 0.596625558 0.109909912 0.402666008 0.471220956 0.015613963 0.160432137 1.34E-05 4.873856012 -0.486015433 AS(ph)PS(ph)PQPSSQPLQIHR ddPTM_HeLa_CUDC101_4h_R1 1 ASPSPQPSSQPLQIHR 16 0 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 2 0 AS(1)PS(0.405)PQPS(0.358)S(0.237)QPLQIHR 192.78 5.43E-11 12700000 2960.2 2936.7 2051.5 2087.6 2722.3 2285.8 1705.3 1574.5 2381.2 2362.7 TRUE FALSE FALSE 2613.209843 3027.176246 2162.410295 2172.741351 2521.481353 2242.202173 1771.073992 1753.734716 2283.045928 2348.646555 1.112644999 1.288902427 0.920704859 0.925103586 1.073589105 0.954678416 0.754082809 0.746700142 0.972068753 1 11.19761391 -4.872897594 2.521620749 1.053745046 0.737188504 0.558247892 0.101803439 0.154739625 1.932466803 0.014899058 0.061427937 1.34E-05 4.872897594 -0.316556542 IFDLGS(ph)DNEEVVAGPAPAHAK ddPTM_HeLa_CUDC101_4h_R1 2 IFDLGSDNEEVVAGPAPAHAK 21 0 A0A096LNM2;Q969U6-2;Q969U6 A0A096LNM2 FBXW5 F-box/WD repeat-containing protein 5 1 0 IFDLGS(1)DNEEVVAGPAPAHAK;IFDLGS(1)DNEEVVAGPAPAHAK ; 177.18 5.61E-10 38292000 8909.1 7317.3 6936.7 6821.2 7886.2 7229.3 6418.6 6176.9 7724 6441.4 TRUE FALSE FALSE 7864.788803 7542.73734 7311.718984 7099.39802 7304.450738 7091.413147 6666.167552 6880.053328 7405.613451 6403.086266 1.228280938 1.177984651 1.141905431 1.108746271 1.140770315 1.107499236 1.041086638 1.074490182 1.15656937 1 12.64455173 -4.870365267 5.375891242 1.120222557 1.058314479 0.195200878 0.056925988 0.422964956 18.17732112 0.012197244 0.038273605 1.35E-05 4.870365267 -0.061908077 SSGPTS(ph)LFAVTVAPPGAR ddPTM_HeLa_CUDC101_4h_R1 2 SSGPTSLFAVTVAPPGAR 18 0 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;A0A1X7SBS1;A0A1W2PP22 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 S(0.001)S(0.002)GPT(0.085)S(0.907)LFAVT(0.005)VAPPGAR;SSGPT(0.031)S(0.969)LFAVTVAPPGAR ; 206.13 1.31E-33 11830000 1802.61 1517.83 1842.82 1577.23 1529.29 1893.42 1996.86 2011.61 1409.9 1536.73 TRUE FALSE FALSE 1591.310788 1564.592543 1942.448423 1641.556257 1416.477323 1857.306168 2073.879559 2240.603551 1351.783325 1527.589462 1.041713646 1.024223185 1.271577523 1.074605644 0.927263089 1.215841176 1.35761578 1.466757665 0.884912707 1 10.57704116 -4.869977809 2.350932256 1.038804354 1.438515557 0.700319142 0.099840306 0.112667107 1.213810072 0.012822267 0.055482489 1.35E-05 4.869977809 0.399711203 LGSPDTVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 LGSPDTVSPR 10 0 H0Y9Y2 H0Y9Y2 BOD1L1 1 0 LGSPDTVS(1)PR 136.5 0.0016184 17664000 2931.9 3095.4 2596.5 2664 3280.7 2457.4 1989.8 1658.2 3454.9 2862.3 TRUE FALSE FALSE 2588.227126 3190.765605 2736.874644 2772.649435 3038.689297 2410.529189 2066.547253 1846.962785 3312.48756 2845.274912 0.909658014 1.12142612 0.961901654 0.974475058 1.067977398 0.847204317 0.726308464 0.649133332 1.164206504 1 11.47435234 -4.867624325 2.527589444 0.976993112 0.670746307 0.702597709 0.08528694 0.100613147 1.262091769 0.009369287 0.038821798 1.36E-05 4.867624325 -0.306246805 NLLEDDS(ph)DEEEDFFLR ddPTM_HeLa_CUDC101_4h_R1 2 NLLEDDSDEEEDFFLR 16 0 O75379 O75379 VAMP4 Vesicle-associated membrane protein 4 1 0 NLLEDDS(1)DEEEDFFLR;NLLEDDS(1)DEEEDFFLR ; 243.37 1.50E-55 5548100 2837.2 2095.6 1516.76 2029.92 2138.07 2027.53 1598.36 1659.94 1888.1 1662.4 TRUE FALSE FALSE 2504.627717 2160.162952 1598.760634 2112.708912 1980.348836 1988.858243 1660.009281 1848.90086 1810.271719 1652.511971 1.515648758 1.307199579 0.967472951 1.278483272 1.198386983 1.203536361 1.004536917 1.118842642 1.095466629 1 10.69044501 -4.867476313 5.639428125 1.231324814 1.062985829 0.074561915 0.154355572 0.366512735 16.75607765 0.028927372 0.090177291 1.36E-05 4.867476313 -0.168338985 SQGS(ph)SQFR ddPTM_HeLa_CUDC101_4h_R1 2 SQGSSQFR 8 0 Q15172 Q15172 PPP2R5A Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform 1 0 S(0.001)QGS(0.994)S(0.006)QFR;SQGS(0.996)S(0.004)QFR ; 110.54 0.011352 79801000 4042.2 1540.28 3690.3 3294.5 2517.7 2133.8 2361.65 1178.93 3566.1 4163.8 TRUE FALSE FALSE 3568.379444 1587.734201 3889.808781 3428.86395 2331.974287 2093.10132 2452.739632 1313.134626 3419.103849 4139.033532 0.862128663 0.383600227 0.939786728 0.828421399 0.563410339 0.505698082 0.592587524 0.317256339 0.826063336 1 12.01507822 -4.866707588 0.193578409 1.073456643 3.11E-17 0.456705989 0.167666708 6.216553393 0.280099131 0.254430378 1.679799044 1.36E-05 4.866707588 -1.073456643 VEQATKPS(ph)FER ddPTM_HeLa_CUDC101_4h_R1 3 VEQATKPSFER 11 1 Q96E39;A0A1B0GUK8 Q96E39 RBMXL1 "RNA binding motif protein, X-linked-like-1" 1 0 VEQATKPS(1)FER;VEQATKPS(1)FER;VEQATKPS(1)FER ;; 135.04 0.0083935 150130800 4879.2 4160.63 4714.62 4263.94 4165.51 4694.7 4978.2 4336.99 4702.02 4850.8 TRUE FALSE FALSE 4307.267572 4288.814079 4969.506618 4437.841904 3858.228626 4605.156419 5170.210842 4830.695411 4508.200745 4821.947226 0.893263109 0.88943613 1.030601619 0.92034228 0.800139123 0.955040817 1.072224684 1.001814243 0.934933655 1 12.23540015 -4.864866596 6.384178409 0.937128602 1.036058649 0.325593816 0.062053689 0.209175517 11.11707076 0.009632215 0.029603589 1.37E-05 4.864866596 0.098930047 TTPVDLCLLEESVGS(ph)LEGSR ddPTM_HeLa_CUDC101_4h_R1 1 TTPVDLCLLEESVGSLEGSR 20 0 Q9UKK3 Q9UKK3 PARP4 Poly [ADP-ribose] polymerase 4 1 0 TTPVDLCLLEES(0.365)VGS(0.63)LEGS(0.005)R 83.229 0.0030284 42668000 1951.2 1452.4 1378.6 1555.5 1595.2 1091.8 835.54 825.41 1442.6 284.99 TRUE FALSE FALSE 1722.483294 1497.146722 1453.131286 1618.940013 1477.525274 1070.975734 867.7670577 919.371338 1383.135417 283.2948668 6.080178272 5.284764738 5.129395045 5.714681779 5.215503164 3.780427602 3.063123125 3.245280609 4.882317258 1 8.146160651 -4.864568081 5.040375843 4.027221101 3.160786528 0.027330517 1.455893918 0.761647607 30.64206807 0.305273426 0.970303025 1.37E-05 4.864568081 -0.866434573 YES(ph)VMKT(ph)EPS(ph)IAEY(ph)TVRSKER ddPTM_HeLa_CUDC101_4h_R1 1 YESVMKTEPSIAEYTVRSKER 21 3 X6R9L0;Q13217 X6R9L0 DNAJC3 DnaJ homolog subfamily C member 3 4 0 Y(0.254)ES(0.851)VMKT(0.894)EPS(0.543)IAEY(0.564)T(0.341)VRS(0.552)KER 40.744 0.003193 0 916.43 664.53 544.63 635.89 765.68 772.22 924.88 804.31 918.74 659.94 TRUE FALSE FALSE 809.0074646 685.0033816 574.0743452 661.8243428 709.1973118 757.4911901 960.5529314 895.8693993 880.8691483 656.0146475 1.23321555 1.044189157 0.875093792 1.008856045 1.081069324 1.154686398 1.464224823 1.36562408 1.342758354 1 9.357584218 -4.864286917 4.291943116 1.081046208 1.414694652 0.525090979 0.123812698 0.115096115 3.735710812 0.016788791 0.055445067 1.37E-05 4.864286917 0.333648443 AAS(ph)EELLEK ddPTM_HeLa_CUDC101_4h_R1 2 AASEELLEK 9 0 F8VY01;Q6ZV73-2;Q6ZV73 F8VY01 FGD6 "FYVE, RhoGEF and PH domain-containing protein 6" 1 0 AAS(1)EELLEK;AAS(1)EELLEK ; 160.91 6.37E-05 26204000 5609.8 5490.1 4831.9 4598.9 5345.9 4785.2 4467.4 3978 4943.1 4869.2 TRUE FALSE FALSE 4952.227748 5659.243474 5093.12713 4786.46302 4951.543608 4693.930283 4639.709114 4430.83944 4739.343326 4840.237782 1.023137286 1.169207739 1.052247298 0.988890058 1.022995942 0.969772663 0.958570493 0.915417721 0.979155062 1 12.24086221 -4.862280207 1.177691768 1.026674001 0.914574039 0.390124638 0.050693534 0.643515043 1.326550073 0.008125518 0.067765943 1.37E-05 4.862280207 -0.112099962 ASS(ph)PSASSSSSFR ddPTM_HeLa_CUDC101_4h_R1 1 ASSPSASSSSSFR 13 0 A0A0J9YYE2;Q8IXZ2 A0A0J9YYE2 ZC3H3 Zinc finger CCCH domain-containing protein 3 1 0 AS(0.125)S(0.87)PS(0.002)AS(0.001)S(0.002)SSSFR 92.781 0.014767 8361900 3355.2 2658.3 2477.8 3106.5 3360.3 2920.8 2179.2 2283.6 3138.4 3052.9 TRUE FALSE FALSE 2961.908542 2740.199072 2611.757363 3233.196497 3112.417364 2865.090606 2263.252474 2543.555793 3009.033824 3034.741215 0.976000368 0.902943242 0.860619466 1.065394466 1.025595642 0.944097174 0.745781045 0.838145863 0.991528968 1 11.56735778 -4.86155793 5.31487168 0.980072934 0.793259836 0.596898766 0.058926083 0.095591565 4.14290674 0.008370927 0.026372169 1.38E-05 4.86155793 -0.186813098 GFAS(ph)PLGAGR ddPTM_HeLa_CUDC101_4h_R1 1 GFASPLGAGR 10 0 Q8TDN4 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 GFAS(1)PLGAGR 120.63 0.00048969 0 962.11 1016.3 926.2 819.46 941.07 754.53 616.02 491.52 768.95 883.59 TRUE FALSE FALSE 849.3329243 1047.610998 976.2731736 852.8811208 871.649141 740.1385974 639.7800978 547.47265 737.2535555 878.3343674 0.966981318 1.19272459 1.111505151 0.971021006 0.992388745 0.842661548 0.728401531 0.623307786 0.839376874 1 9.778626444 -4.860802066 1.423895155 1.011658489 0.616900222 0.708049267 0.087834519 0.19339151 0.648303931 0.011589583 0.079133003 1.38E-05 4.860802066 -0.394758268 GLS(ph)SSEKDNIER ddPTM_HeLa_CUDC101_4h_R1 1 GLSSSEKDNIER 12 1 Q8IYH5-2;Q8IYH5;Q8IYH5-4 Q8IYH5-2 ZZZ3 ZZ-type zinc finger-containing protein 3 1 0 GLS(0.986)S(0.005)S(0.009)EKDNIER 109.95 0.028813 11981000 1781.2 1751.5 1853.7 1971.5 2499.5 2205.9 2560.4 2482.5 1965.3 2233.5 TRUE FALSE FALSE 1572.410436 1805.461639 1953.916629 2051.906292 2315.116865 2163.826133 2659.155486 2765.097765 1884.289502 2220.215043 0.708224386 0.813192238 0.880057378 0.92419259 1.042744428 0.97460205 1.19770177 1.245418895 0.848696845 1 11.1164837 -4.857914139 0.810300848 0.857079642 1.327154418 0.754326099 0.078606181 0.67420709 0.52461029 0.019366192 0.23595678 1.39E-05 4.857914139 0.470074776 EEDEHPY(ph)ELLLTAETK ddPTM_HeLa_CUDC101_4h_R1 3 EEDEHPYELLLTAETK 16 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 EEDEHPY(1)ELLLTAETK;EEDEHPY(1)ELLLTAETK;EEDEHPY(1)ELLLTAETK ;; 177.39 1.75E-06 8666200 10840.7 7955.2 7936.2 8296.7 10279.9 7816.5 5226.1 4342.7 8104.6 9087.6 TRUE FALSE FALSE 9569.969579 8200.290283 8365.254978 8635.075287 9521.572257 7667.413286 5427.672428 4837.055414 7770.524958 9033.546551 1.059381221 0.907759786 0.926021129 0.955889831 1.054023711 0.848771105 0.600835164 0.53545475 0.860185412 1 13.14107678 -4.855555961 2.337908136 1.007620184 0.53925123 0.832749968 0.06882906 0.064116197 0.681457573 0.008436271 0.037345807 1.39E-05 4.855555961 -0.468368953 EASRPPEEPSAPSPT(ph)LPAQFK ddPTM_HeLa_CUDC101_4h_R1 1 EASRPPEEPSAPSPTLPAQFK 21 1 H0Y3X6;A0A0C4DFX9;Q9H3P2;Q9H3P2-7 H0Y3X6 NELFA Negative elongation factor A 1 0 EASRPPEEPSAPS(0.305)PT(0.695)LPAQFK 84.025 0.0013446 16264000 2902 2102.7 2153.4 2264.8 2403.9 2611.4 2669.5 2622.3 2148.6 2173.2 TRUE FALSE FALSE 2561.831959 2167.481695 2269.819318 2357.168333 2226.569086 2561.591896 2772.463509 2920.812032 2060.033799 2160.27371 1.185883042 1.003336607 1.050709133 1.091143369 1.030688415 1.185771916 1.283385294 1.352056464 0.953598514 1 11.0769984 -4.855531681 2.150538788 1.07728426 1.339221224 0.724918807 0.065951263 0.157244662 1.394291224 0.010623904 0.049976933 1.39E-05 4.855531681 0.261936964 GFGDGYNGYGGGPGGGNFGGS(ph)PGYGGGR ddPTM_HeLa_CUDC101_4h_R1 4 GFGDGYNGYGGGPGGGNFGGSPGYGGGR 28 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR;GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR;GFGDGYNGY(0.014)GGGPGGGNFGGS(0.986)PGYGGGR;GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR ;;; 156.88 1.75E-16 306842000 14492.5 13142.6 12068.3 12532.4 13028.1 10975.5 9406.2 5076.2 15351.5 13330.1 TRUE FALSE FALSE 12793.71112 13547.50793 12720.7488 13043.52544 12067.04302 10766.16062 9769.000285 5654.054089 14718.70467 13250.81197 0.965503936 1.022390775 0.959997684 0.984356692 0.910664421 0.812490634 0.737237862 0.426694915 1.110777566 1 13.69379315 -4.083789161 0.822223433 0.986096365 4.56E-21 0.933623524 0.047659633 0.297902482 0.120366282 0.004188936 0.285125603 8.25E-05 4.083789161 -0.986096365 down (ac)MEDLDQS(ph)PLVSSSDSPPRPQPAFK ddPTM_HeLa_CUDC101_4h_R1 1 MEDLDQSPLVSSSDSPPRPQPAFK 24 1 Q9NQC3-5;Q9NQC3;Q9NQC3-2;Q9NQC3-4 Q9NQC3-5 RTN4 Reticulon-4 1 0 MEDLDQS(0.801)PLVS(0.099)S(0.099)S(0.001)DSPPRPQPAFK 93.029 7.44E-09 121520000 2314.2 2417.2 1795.9 2866.7 2616.8 3176.9 2608.9 3153 1963.1 2571.2 TRUE FALSE FALSE 2042.932984 2491.671067 1892.991786 2983.616417 2423.763877 3116.305926 2709.526147 3511.924775 1882.180187 2555.906388 0.799298829 0.97486789 0.74063424 1.167341821 0.948299159 1.219256675 1.060103828 1.374042802 0.736404195 1 11.31961928 -4.855388335 0.68596898 0.90209669 1.383293838 0.563230544 0.132159749 0.951536177 0.486259081 0.021956837 0.303623493 1.40E-05 4.855388335 0.481197148 IESDVQEPT(ph)EPEDDLDIMLGNK ddPTM_HeLa_CUDC101_4h_R1 4 IESDVQEPTEPEDDLDIMLGNK 22 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 IES(0.029)DVQEPT(0.971)EPEDDLDIMLGNK;IESDVQEPT(1)EPEDDLDIMLGNK;IES(0.002)DVQEPT(0.998)EPEDDLDIMLGNK;IESDVQEPT(1)EPEDDLDIMLGNK ;;; 179.44 3.05E-10 45231600 10092 8598 8640.3 8318.4 10834.2 13403.9 14453.2 15894.7 8543.3 9941.4 TRUE FALSE FALSE 8909.031058 8862.894189 9107.420753 8657.660307 10034.98265 13148.24294 15010.66477 17704.0884 8191.141558 9882.268111 0.901516834 0.896848182 0.921592154 0.876080289 1.01545339 1.330488385 1.518949354 1.791500514 0.82887263 1 13.27062648 -4.855198195 1.333452157 0.937977342 1.802146595 0.962924404 0.059642394 0.07537736 0.213281359 0.008871837 0.065596174 1.40E-05 4.855198195 0.864169252 T(ph)PSASNDDQQE ddPTM_HeLa_CUDC101_4h_R1 2 TPSASNDDQQE 11 0 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 0 T(0.496)PS(0.496)AS(0.007)NDDQQE;T(0.496)PS(0.496)AS(0.008)NDDQQE ; 183.99 5.56E-10 48385000 4039.4 3755.3 4442.3 4368 5233.2 5108.1 6337.7 5866.9 4507.4 4853.9 TRUE FALSE FALSE 3565.907655 3870.996342 4682.464175 4546.14592 4847.157262 5010.671503 6582.147212 6534.764181 4321.603064 4825.028787 0.739043809 0.802274248 0.970453106 0.942200787 1.004586185 1.038474945 1.364167449 1.35434719 0.895663685 1 12.23632183 -4.855185175 0.982927127 0.875426709 1.46959463 0.829423238 0.08058848 0.353105402 0.451930329 0.017372274 0.177474293 1.40E-05 4.855185175 0.594167922 TPPT(ph)ANHPVEPVTSVTQPSELLQQK ddPTM_HeLa_CUDC101_4h_R1 1 TPPTANHPVEPVTSVTQPSELLQQK 25 0 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 1 0 T(0.464)PPT(0.533)ANHPVEPVT(0.002)S(0.001)VTQPSELLQQK 68.834 0.00085585 13739000 2593.2 2702.5 2192.7 1828.2 2249.9 2141.1 1728.5 1868.1 2105.8 1795.6 TRUE FALSE FALSE 2289.229027 2785.760822 2311.243995 1902.761898 2083.929359 2100.262085 1795.168824 2080.756953 2018.998033 1784.919691 1.28253895 1.560720538 1.29487282 1.066021013 1.167519956 1.176670354 1.005742069 1.165742617 1.131142226 1 10.80164345 -4.854589295 13.05846575 1.178117274 1.08578316 0.067150883 0.15176698 1.663372852 223.036091 0.025536642 0.076649405 1.40E-05 4.854589295 -0.092334115 QT(ph)SPDPCPQLPLVPR ddPTM_HeLa_CUDC101_4h_R1 1 QTSPDPCPQLPLVPR 15 0 A0A1W2PQC8;Q5D1E8 A0A1W2PQC8 ZC3H12A Ribonuclease ZC3H12A 1 0 QT(0.5)S(0.5)PDPCPQLPLVPR 122.12 0.0042465 6067900 2428.3 2119.2 1992.8 1760.3 2144.8 1714.5 1495.2 1233.9 2125.3 1701 TRUE FALSE FALSE 2143.658355 2184.49004 2100.536796 1832.092643 1986.582377 1681.798769 1552.870365 1374.362188 2037.694234 1690.882376 1.267774971 1.291923123 1.24227257 1.083512767 1.174879107 0.994627889 0.918378704 0.812807684 1.205107028 1 10.72356059 -4.854299342 1.519082867 1.151596056 0.816356627 0.681737799 0.087162498 0.321221161 1.262130139 0.017862404 0.115376834 1.40E-05 4.854299342 -0.335239429 TLDS(ph)VAK ddPTM_HeLa_CUDC101_4h_R1 1 TLDSVAK 7 0 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 TLDS(1)VAK 86.882 0.036984 15024000 3493.5 2375 3007.3 2560.6 3488.3 3176.8 3551.4 2978.6 3475.6 3224.1 TRUE FALSE FALSE 3083.997226 2448.170935 3169.883735 2665.032336 3230.975059 3116.207833 3688.378688 3317.671784 3332.334297 3204.92291 0.96226877 0.76387826 0.989067077 0.831543351 1.008128791 0.972319123 1.150847865 1.035179902 1.039754899 1 11.64607394 -4.853623823 6.680399401 0.956793549 1.09215719 0.319145289 0.084944571 0.180737937 10.83996012 0.0113717 0.034848304 1.40E-05 4.853623823 0.135363641 GADNDGSGSESGYT(ph)TPK ddPTM_HeLa_CUDC101_4h_R1 1 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 GADNDGSGSESGYT(0.994)T(0.005)PK 142.35 0.00090785 101500000 6869.8 6415.9 6240.6 6083.1 6729.8 5495.4 4356.8 3670.4 6512.6 5995.1 TRUE FALSE FALSE 6064.532458 6613.566274 6577.985713 6331.195111 6233.356062 5390.584401 4524.843235 4088.2235 6244.147871 5959.440879 1.01763447 1.10976288 1.103792427 1.062380723 1.045963235 0.904545327 0.759273114 0.686007896 1.047774111 1 12.54096127 -4.851395397 2.033313639 1.03010333 0.693265873 0.917934005 0.039504043 0.086287736 0.674964378 0.007027394 0.034768625 1.41E-05 4.851395397 -0.336837457 YKDLDEDELLGNLS(ph)ETELK ddPTM_HeLa_CUDC101_4h_R1 2 YKDLDEDELLGNLSETELK 19 1 Q9NYL9;H0YNU8 Q9NYL9 TMOD3 Tropomodulin-3 1 0 YKDLDEDELLGNLS(0.747)ET(0.253)ELK;YKDLDEDELLGNLS(0.92)ET(0.08)ELK ; 128.8 2.41E-05 267550000 10658.9 10948.1 8380.9 8864.4 8383.1 9255.3 7421.3 6361.7 10161.2 9731 TRUE FALSE FALSE 9409.4799 11285.39798 8833.996805 9225.928547 7764.695414 9078.770573 7707.542027 7085.890213 9742.351035 9673.119579 0.972745124 1.166676158 0.913252104 0.953769719 0.802708511 0.938556636 0.796800036 0.732534128 1.007157097 1 13.23976552 -4.850000763 0.600964692 0.999257676 0.674209708 0.608342696 0.074714167 1.057511952 0.390658992 0.013924779 0.20726111 1.41E-05 4.850000763 -0.325047968 ES(ph)EELLK ddPTM_HeLa_CUDC101_4h_R1 2 ESEELLK 7 0 O43303-2;O43303 O43303-2 CCP110 Centriolar coiled-coil protein of 110 kDa 1 0 ES(1)EELLK;ES(1)EELLK ; 98.582 0.023549 66177000 7272.8 5857 4763.7 4913.2 7337.5 7623.7 7546.7 7484.9 6691.9 8365.1 TRUE FALSE FALSE 6420.293409 6037.447228 5021.240031 5113.581533 6796.227243 7478.290624 7837.778747 8336.950761 6416.05705 8315.344013 0.77210196 0.726061029 0.603852351 0.614957304 0.817311615 0.899336289 0.942568189 1.002598419 0.771592497 1 13.02156023 -4.849962602 2.287084976 0.830052809 0.985197582 0.230174752 0.120636405 0.539214937 5.462668287 0.022916903 0.103814296 1.41E-05 4.849962602 0.155144773 LSS(ph)SPPR ddPTM_HeLa_CUDC101_4h_R1 1 LSSSPPR 7 0 Q9Y2K6;O95231 Q9Y2K6 USP20;VENTX Ubiquitin carboxyl-terminal hydrolase 20;Homeobox protein VENTX 1 0 LS(0.091)S(0.59)S(0.319)PPR 90.37 0.033007 10722000 6381.2 5489.1 5477 5551.6 5434.7 5117.2 4248.2 3828.2 4485.4 4843.5 TRUE FALSE FALSE 5633.205409 5658.212665 5773.103187 5778.018244 5033.793008 5019.597936 4412.054497 4263.986814 4300.509914 4814.690647 1.170003604 1.175197553 1.199060046 1.200080892 1.045507049 1.042558765 0.916373412 0.8856201 0.893205863 1 12.23322739 -4.849495682 1.731759579 1.106262497 0.878011943 0.414451595 0.092707186 0.283778581 1.530567687 0.012833142 0.073421558 1.41E-05 4.849495682 -0.228250554 PSSTS(ph)PDQGDDLENCILR ddPTM_HeLa_CUDC101_4h_R1 2 PSSTSPDQGDDLENCILR 18 0 Q5T7X0;Q5T7W7 Q5T7X0 TSTD2 Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 1 0 PSST(0.055)S(0.944)PDQGDDLENCILR;PSS(0.001)T(0.006)S(0.993)PDQGDDLENCILR ; 170.47 2.95E-07 9486600 2321.72 2081.53 1905.15 1896.14 1897.54 1864.46 1565.28 1432.37 1663.91 1689.83 TRUE FALSE FALSE 2049.571501 2145.659472 2008.148172 1973.472785 1757.562255 1828.898532 1625.653374 1595.425211 1595.322926 1679.778816 1.220143677 1.277346429 1.195483687 1.174840858 1.046305762 1.088773423 0.967778233 0.949782909 0.949722017 1 10.71405556 -4.849228507 1.36901189 1.13061728 0.93300885 0.319003023 0.095725968 0.575748011 1.736844281 0.016022692 0.116453264 1.42E-05 4.849228507 -0.19760843 FQSQADQDQQASGLQS(ph)PPSR ddPTM_HeLa_CUDC101_4h_R1 1 FQSQADQDQQASGLQSPPSR 20 0 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 FQS(0.007)QADQDQQAS(0.002)GLQS(0.992)PPSR 169.77 8.58E-08 16825000 2038.6 1755.5 1843.8 1610 2061 1709.7 1258.8 1247.6 1763.8 1710.7 TRUE FALSE FALSE 1799.638398 1809.584874 1943.481405 1675.662759 1908.964136 1677.090321 1307.352338 1389.621741 1691.095417 1700.52468 1.058284198 1.064133261 1.142871625 0.985379853 1.122573614 0.986219336 0.76879351 0.817172345 0.994455086 1 10.73176423 -4.848716313 4.447463889 1.042349413 0.792590642 0.796421988 0.051424908 0.063145937 2.23083944 0.007078739 0.023341514 1.42E-05 4.848716313 -0.24975877 VSPPAPGS(ph)APETPEDK ddPTM_HeLa_CUDC101_4h_R1 1 VSPPAPGSAPETPEDK 16 0 M0R0P8;Q13459-2;Q13459;M0R300 M0R0P8 MYO9B Unconventional myosin-IXb 1 0 VS(0.005)PPAPGS(0.995)APETPEDK 134.82 0.00041454 21530000 1591.1 2148.2 1146.5 1335.1 1403.4 1407.7 1112.4 1025.2 1234.3 1376.7 TRUE FALSE FALSE 1404.59367 2214.383496 1208.483258 1389.551149 1299.873978 1380.850468 1155.305641 1141.904624 1183.421632 1368.511327 1.026366127 1.618096578 0.883064125 1.01537424 0.949845246 1.00901647 0.844206122 0.834413718 0.864751068 1 10.41839166 -4.846991093 0.965578358 1.052592276 0.79171104 0.154847563 0.199097333 1.451799119 1.763798395 0.03009558 0.317715815 1.42E-05 4.846991093 -0.260881236 SQSAAVTPS(ph)STTSSTR ddPTM_HeLa_CUDC101_4h_R1 1 SQSAAVTPSSTTSSTR 16 0 Q16186;A0A087WX59 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 1 0 SQS(0.003)AAVT(0.111)PS(0.266)S(0.266)T(0.266)T(0.024)S(0.059)S(0.005)TR 187.5 6.27E-11 16942000 3956.5 3576.7 3213.6 3351.7 3921.2 3292.6 2800.6 1376.2 4046.8 3607.4 TRUE FALSE FALSE 3492.725068 3686.893888 3387.336937 3488.396813 3631.940888 3229.799141 2908.62008 1532.861045 3879.989191 3585.943024 0.974004619 1.028151831 0.944615381 0.972797613 1.012827271 0.90068334 0.811117204 0.42746386 1.081999676 1 11.80813685 -4.083211408 1.308879414 0.987485769 5.65E-15 0.948765801 0.040101183 0.19250498 0.209723003 0.003723831 0.281841913 8.26E-05 4.083211408 -0.987485769 down VSVGAPDLSLEASEGS(ph)IKLPK ddPTM_HeLa_CUDC101_4h_R1 2 VSVGAPDLSLEASEGSIKLPK 21 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VSVGAPDLSLEAS(0.018)EGS(0.982)IKLPK;VSVGAPDLS(0.001)LEAS(0.013)EGS(0.986)IKLPK ; 104.38 4.88E-05 140471000 4497.3 2720.4 2652 3408 3808.5 4445.9 7185.2 6574.3 2080.43 3028.9 TRUE FALSE FALSE 3970.133311 2804.2123 2795.375142 3546.992971 3527.554543 4361.101865 7462.335571 7322.691738 1994.673795 3010.883968 1.318593926 0.931358475 0.928423404 1.178057012 1.171600958 1.448445676 2.478453388 2.432073708 0.662487766 1 11.5559714 -4.846830755 3.064828428 1.125805481 2.492590634 0.894739636 0.190958325 0.045585196 0.84225364 0.022067962 0.084218959 1.42E-05 4.846830755 1.366785153 up LVQS(ph)PNSYFMDVK ddPTM_HeLa_CUDC101_4h_R1 1 LVQSPNSYFMDVK 13 0 P42677;H0YMV8;Q71UM5;C9JLI6 P42677 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like 1 0 LVQS(0.946)PNS(0.052)Y(0.002)FMDVK 82.515 0.027354 15252000 3081 2792.6 2327.4 2733.1 2994.4 2661 1841.2 2127.8 2658.3 2572.6 TRUE FALSE FALSE 2719.84985 2878.636696 2453.226284 2844.567631 2773.509078 2610.245859 1912.215701 2370.020151 2548.723749 2557.298061 1.063563881 1.125655527 0.95930401 1.112333238 1.084546663 1.020704586 0.747748465 0.926767273 0.996647121 1 11.32040461 -4.845994791 7.189589424 1.042247497 0.838388621 0.628172914 0.064112868 0.090959386 6.441013406 0.008378478 0.025547334 1.43E-05 4.845994791 -0.203858876 GARPPAAGPGGDEDEDEEDTAPESALDTS(ph)LDK ddPTM_HeLa_CUDC101_4h_R1 1 GARPPAAGPGGDEDEDEEDTAPESALDTSLDK 32 1 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 GARPPAAGPGGDEDEDEEDTAPESALDT(0.263)S(0.737)LDK 118.68 9.19E-15 14698000 1438.6 1282 975.85 1168.9 1153.4 923.71 880.6 628.4 1047.7 1038.6 TRUE FALSE FALSE 1269.969489 1321.4969 1028.607403 1216.572794 1068.31598 906.0917708 914.565037 699.9345159 1004.513363 1032.422361 1.230087159 1.279996395 0.996304847 1.178367343 1.03476641 0.877636716 0.885843887 0.677953658 0.97296746 1 10.01181758 -4.844521738 1.005503178 1.122359583 0.668076049 0.638724449 0.103241178 0.459952596 0.620127006 0.017681204 0.179989724 1.43E-05 4.844521738 -0.454283534 GS(ph)PHY(ph)FSPFRPY ddPTM_HeLa_CUDC101_4h_R1 2 GSPHYFSPFRPY 12 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 2 0 GS(1)PHY(0.992)FS(0.008)PFRPY;GS(1)PHY(0.726)FS(0.274)PFRPY ; 77.527 0.028407 8156800 1804.86 1623.22 1572 1277.04 1787.23 1424.75 1219.18 1057.36 1746.97 1451.65 TRUE FALSE FALSE 1593.297047 1673.229484 1656.987075 1329.123211 1655.389604 1397.575268 1266.204181 1177.725588 1674.959157 1443.015521 1.104144081 1.15953672 1.14828084 0.921073399 1.147173803 0.968510211 0.877470937 0.81615587 1.160735372 1 10.4948711 -4.843594047 2.423636746 1.062344083 0.830520217 0.598981967 0.078234731 0.162037987 1.856783075 0.010853929 0.047636986 1.43E-05 4.843594047 -0.231823865 TPLGAS(ph)LDEQSSSTLK ddPTM_HeLa_CUDC101_4h_R1 3 TPLGASLDEQSSSTLK 16 0 E9PHV5;P28290-3;P28290 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 TPLGAS(0.991)LDEQS(0.006)S(0.001)STLK;TPLGAS(1)LDEQSSSTLK;T(0.003)PLGAS(0.995)LDEQS(0.002)SSTLK ;; 195.17 3.45E-16 157499000 3601.55 2951.31 2580.97 3225.15 4173.37 3607.57 4239 3939.77 3046.02 3737.59 TRUE FALSE FALSE 3179.381769 3042.236363 2720.505045 3356.685557 3865.50881 3538.761613 4402.49965 4388.257492 2920.461766 3715.358648 0.855740204 0.818827104 0.732232148 0.903462054 1.040413369 0.952468375 1.184946076 1.181112756 0.786051104 1 11.85928577 -4.842092067 1.293317789 0.906167071 1.22446267 0.626916618 0.090936676 0.367652802 0.954621754 0.014919072 0.11677483 1.44E-05 4.842092067 0.318295599 SYGSLVQSACS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 1 SYGSLVQSACSPVR 14 0 Q96S90 Q96S90 LYSMD1 LysM and putative peptidoglycan-binding domain-containing protein 1 1 0 SYGS(0.003)LVQS(0.095)ACS(0.902)PVR 74.133 0.037975 6305900 1860.4 1221.1 1059.7 1501.7 1436.8 1402.5 935.3 1110 1185.5 1259 TRUE FALSE FALSE 1642.326732 1258.720644 1116.990587 1562.945817 1330.810127 1375.749649 971.3748343 1236.357913 1136.633188 1251.511412 1.312274676 1.00576042 0.892513306 1.248846636 1.063362358 1.099270559 0.776161388 0.987891841 0.908208409 1 10.28945573 -4.841253764 7.373144128 1.121312879 0.883182349 0.128963238 0.143044247 0.198669674 15.37665215 0.021077316 0.064189692 1.44E-05 4.841253764 -0.238130531 MAGNEALSPTS(ph)PFR ddPTM_HeLa_CUDC101_4h_R1 1 MAGNEALSPTSPFR 14 0 Q86WR7;Q86WR7-2;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 0 MAGNEALS(0.011)PT(0.066)S(0.924)PFR 96.489 0.0096086 14883000 2100.6 1981.7 1736.9 1759.8 2515.2 1799.9 1404.8 1242.5 2115.7 1989.2 TRUE FALSE FALSE 1854.370852 2042.753828 1830.802068 1831.572251 2329.658707 1765.569906 1458.983607 1383.941178 2028.489951 1977.36815 0.937797472 1.033067023 0.925878202 0.926267701 1.178161339 0.892888816 0.737841159 0.699890497 1.025853456 1 10.94936578 -4.840907223 3.633236162 0.981417264 0.713095311 0.699056351 0.07304749 0.090798608 2.318312945 0.009761573 0.034718176 1.44E-05 4.840907223 -0.268321954 DINTFVGT(ph)PVEK ddPTM_HeLa_CUDC101_4h_R1 2 DINTFVGTPVEK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 DINT(0.001)FVGT(0.999)PVEK;DINTFVGT(1)PVEK ; 210.08 9.65E-23 95728000 12008.6 8892.2 10043.5 9044.5 7364.2 8196.4 7130.6 1733.47 8550 13163.6 TRUE FALSE FALSE 10600.97011 9166.158142 10586.48199 9413.373804 6820.957638 8040.067326 7405.629631 1930.801218 8197.565381 13085.30232 0.810143308 0.700492653 0.809036102 0.719385275 0.521268632 0.614434969 0.565950213 0.147554957 0.626471225 1 13.67565964 -4.839109266 0.265168326 0.990971842 1.54E-19 0.545262183 0.144423652 2.080161858 0.14712041 0.065103529 0.658126643 1.45E-05 4.839109266 -0.990971842 T(ph)SSTLDSEGTFNSYR ddPTM_HeLa_CUDC101_4h_R1 1 TSSTLDSEGTFNSYR 15 0 Q92609;Q92609-2;C9JNM0;C9JED7;F2Z3C3;C9K0P2;C9J397;C9JWX0;C9JW04;C9JDR8 Q92609 TBC1D5 TBC1 domain family member 5 1 0 T(0.592)S(0.408)STLDSEGTFNSYR 115.83 0.0069745 5369800 1435.7 862.1 815.09 987.86 912.7 924.8 688.65 637.34 1090.8 745.72 TRUE FALSE FALSE 1267.409422 888.6602792 859.1562309 1028.149201 845.3719394 907.1609808 715.2114612 709.8922094 1045.836762 741.2844243 1.709747812 1.198811482 1.15901023 1.386983413 1.140415085 1.223769111 0.964827316 0.957651592 1.410844108 1 9.533883388 -4.83888086 0.906595024 1.322203432 0.868944344 0.33372479 0.181932731 1.35114314 1.38532092 0.043408253 0.494500362 1.45E-05 4.83888086 -0.453259089 GHLS(ph)EGLVTK ddPTM_HeLa_CUDC101_4h_R1 2 GHLSEGLVTK 10 0 Q16659 Q16659 MAPK6 Mitogen-activated protein kinase 6 1 0 GHLS(0.998)EGLVT(0.002)K;GHLS(0.994)EGLVT(0.006)K ; 103.21 0.012766 23510000 2123.56 1741.77 2041.4 1835.41 1947.14 1969.81 1996.72 1764.56 1720.72 1996.33 TRUE FALSE FALSE 1874.639516 1795.431869 2151.764259 1910.265953 1803.503361 1932.239156 2073.734159 1965.430378 1649.791193 1984.45574 0.944661792 0.904747752 1.084309524 0.962614542 0.90881511 0.973687201 1.044988869 0.990412806 0.831357011 1 10.95452767 -4.838530324 9.170920968 0.97078075 1.017568936 0.084356567 0.066049282 0.434324598 47.14151799 0.006901783 0.02081344 1.45E-05 4.838530324 0.046788186 KSTVGT(ph)LY(ph)AVGGMDNNKGATT(ph)IEK ddPTM_HeLa_CUDC101_4h_R1 1 KSTVGTLYAVGGMDNNKGATTIEK 24 2 F5H1J3;Q9NR64 F5H1J3 KLHL1 Kelch-like protein 1 3 0 KS(0.222)T(0.222)VGT(0.774)LY(0.781)AVGGMDNNKGAT(0.121)T(0.88)IEK 42.612 0.002869 0 674.52 828.23 696.18 727.7 834.56 1020.7 1546.9 1517.3 600.89 852.99 TRUE FALSE FALSE 595.4537881 853.7467846 733.8175966 757.3787514 772.9961715 1001.231848 1606.564451 1690.023299 576.1210599 847.9163775 0.702255321 1.006876158 0.865436281 0.893223402 0.911641987 1.180814376 1.894720392 1.993148551 0.679455044 1 9.727778181 -4.838169134 2.285024874 0.873313724 2.018503364 0.944803631 0.102976901 0.053828971 0.543300851 0.016745897 0.077166127 1.45E-05 4.838169134 1.14518964 DKRPLS(ph)GPDVGTPQPAGLASGAK ddPTM_HeLa_CUDC101_4h_R1 1 DKRPLSGPDVGTPQPAGLASGAK 23 2 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 DKRPLS(0.999)GPDVGT(0.001)PQPAGLASGAK 111.95 5.78E-06 71253000 2079 1796.8 2303.2 1783.1 2342.9 1803.2 1395.2 1186.1 1401.7 2082.5 TRUE FALSE FALSE 1835.302772 1852.157278 2427.717959 1855.822525 2170.068935 1768.806964 1449.013331 1321.12083 1343.921333 2070.113197 0.886571215 0.894713043 1.172746477 0.896483597 1.048285155 0.854449393 0.699968163 0.638187724 0.649201857 1 11.01549394 -4.836809358 2.671342581 0.960814473 0.651951141 0.38964171 0.129179934 0.124727568 1.75073348 0.012134162 0.050495939 1.46E-05 4.836809358 -0.308863332 FVHGPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 FVHGPSPR 8 0 Q5T200-2;Q5T200;Q5T9K0 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 FVHGPS(1)PR;FVHGPS(1)PR;FVHGPS(1)PR ;; 97.813 0.013369 96587000 12165.6 10585.8 11976.1 10723.2 12230.7 10232.9 9271 7813.9 11797.2 11343.7 TRUE FALSE FALSE 10739.56681 10911.93595 12623.56419 11160.53845 11328.46563 10037.72448 9628.585576 8703.402791 11310.91442 11276.22717 0.952407809 0.967693874 1.119484736 0.989740476 1.004632619 0.890166927 0.853883611 0.771836418 1.00307614 1 13.46099683 -4.834529506 1.627533369 0.989859772 0.781929968 0.741213024 0.04640315 0.194805341 0.899443729 0.007252768 0.045239069 1.46E-05 4.834529506 -0.207929804 EPAPLLSAQYETLS(ph)DSDD ddPTM_HeLa_CUDC101_4h_R1 1 EPAPLLSAQYETLSDSDD 18 0 A0A088AWL3;O75376;O75376-2;E7EVK1 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 EPAPLLSAQYETLS(0.875)DS(0.125)DD 149.3 6.74E-05 3329100 848.85 727.46 725.7 822.47 902.95 722.72 531.87 485.07 884.17 768 TRUE FALSE FALSE 749.3490898 749.8721803 764.9335371 856.0138816 836.3411774 708.9353201 552.3844041 540.2884081 847.7241384 763.4319018 0.981553283 0.982238466 1.001966954 1.121270777 1.095502003 0.928616316 0.723554259 0.707710022 1.110412253 1 9.576355664 -4.83377974 3.492254867 1.007411352 0.708500861 0.82634631 0.057678305 0.064451257 1.540513566 0.007512377 0.02735152 1.47E-05 4.83377974 -0.298910491 LLDES(ph)ESAASSR ddPTM_HeLa_CUDC101_4h_R1 1 LLDESESAASSR 12 0 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12;Q8N108-19;Q8N108-16;Q8N108-14;Q8N108-18;Q8N108-15 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 LLDES(0.866)ES(0.134)AASSR 195.72 4.03E-16 6688900 1151.7 1093.1 1123.4 835.54 1139.9 1242.4 1484.6 1207.3 1311.2 1481.8 TRUE FALSE FALSE 1016.699472 1126.777115 1184.134402 869.6169327 1055.811848 1218.70329 1541.861519 1344.734152 1257.151781 1472.986188 0.690230146 0.764961087 0.803900547 0.590376841 0.716783264 0.827369123 1.04675898 0.912930592 0.853471534 1 10.52452819 -4.83373283 7.415688945 0.810527796 0.979099495 0.318506864 0.10987095 0.275616526 23.71358843 0.020727077 0.063163871 1.47E-05 4.83373283 0.1685717 LEFQQQLGEAPSDAS(ph)P ddPTM_HeLa_CUDC101_4h_R1 2 LEFQQQLGEAPSDASP 16 0 Q9BUW7 Q9BUW7 C9orf16 UPF0184 protein C9orf16 1 0 LEFQQQLGEAPSDAS(1)P;LEFQQQLGEAPS(0.004)DAS(0.996)P ; 125.39 0.00051646 30031000 4316.5 3903.4 4002.5 3669 4333 3648.5 3195.5 2779.1 4106.7 3878.4 TRUE FALSE FALSE 3810.526413 4023.659127 4218.887257 3818.637679 4013.363223 3578.910941 3318.751505 3095.46151 3937.420088 3855.331104 0.98837851 1.043661107 1.094299593 0.990482419 1.040990544 0.928301836 0.860821397 0.802904193 1.02129233 1 11.91263905 -4.83325798 2.011590366 1.008245041 0.811670819 0.833835926 0.034414871 0.115797431 0.880407751 0.005356939 0.027497841 1.47E-05 4.83325798 -0.196574222 NESSDSALGDS(ph)ESEDTGHDMTR ddPTM_HeLa_CUDC101_4h_R1 2 NESSDSALGDSESEDTGHDMTR 22 0 A0A087WX11;J3KNG8;Q8TF40-3;Q8TF40 A0A087WX11 FNIP1 Folliculin-interacting protein 1 1 0 NESSDSALGDS(0.999)ES(0.001)EDTGHDMTR;NESSDSALGDS(0.991)ES(0.009)EDTGHDMTR ; 131.62 1.27E-08 8953200 2997.95 2231.71 2324.73 2221.92 2097.14 2032.57 1835.06 1402.29 2377.69 1921.32 TRUE FALSE FALSE 2646.534846 2300.46634 2450.411936 2312.539502 1942.43816 1993.802114 1905.838879 1561.921025 2279.680612 1909.891903 1.385698762 1.204500808 1.283010798 1.210822192 1.01704089 1.043934534 0.997877878 0.817805983 1.193617612 1 10.89927527 -4.830525174 0.919869007 1.196051021 0.807363109 0.59435797 0.101662894 0.874818367 0.925961827 0.024366828 0.277970375 1.48E-05 4.830525174 -0.388687912 DVDETGITVAS(ph)LER ddPTM_HeLa_CUDC101_4h_R1 2 DVDETGITVASLER 14 0 Q8WU90;H7C466 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 1 0 DVDETGITVAS(1)LER;DVDETGITVAS(1)LER ; 221.85 1.10E-32 27952000 2500 1907.17 2117.4 2125.86 2285.3 2251.3 2634.8 2284.3 2066.89 2081.8 TRUE FALSE FALSE 2206.95379 1965.927647 2231.873049 2212.56176 2116.717972 2208.360203 2736.425119 2544.335479 1981.691919 2069.417361 1.066461426 0.949990893 1.078503105 1.069171353 1.02285697 1.067141044 1.322316692 1.229493637 0.957608628 1 11.01500892 -4.830108 5.541572591 1.032542828 1.275370677 0.812480431 0.048015845 0.049321844 2.754045973 0.005922609 0.018733139 1.48E-05 4.830108 0.242827849 SGS(ph)PMVPSYETSVSPQANR ddPTM_HeLa_CUDC101_4h_R1 1 SGSPMVPSYETSVSPQANR 19 0 Q9Y2I7;E9PDH4;Q9Y2I7-2;Q9Y2I7-3;Q9Y2I7-4 Q9Y2I7 PIKFYVE 1-phosphatidylinositol 3-phosphate 5-kinase 1 0 S(0.001)GS(0.999)PMVPSYETSVSPQANR 174.4 3.19E-18 0 1178.1 940.63 696.08 1033.2 957.47 821.36 662.52 544.04 978.3 805.93 TRUE FALSE FALSE 1040.004904 969.6096954 733.7121903 1075.338362 886.8393456 805.6939265 688.0736183 605.9713145 937.9740599 801.1362925 1.298162265 1.210293061 0.915839411 1.342266443 1.10697687 1.005688962 0.85887211 0.756389793 1.170804604 1 9.64590389 -4.829100879 1.734562222 1.145669311 0.759953045 0.571307208 0.119480954 0.275132913 1.478873814 0.020630059 0.12201054 1.48E-05 4.829100879 -0.385716266 FQELLAS(ph)PAYR ddPTM_HeLa_CUDC101_4h_R1 2 FQELLASPAYR 11 0 Q9NSI2-2;Q9NSI2 Q9NSI2-2 FAM207A Protein FAM207A 1 0 FQELLAS(1)PAYR;FQELLAS(1)PAYR ; 133.04 0.0017868 13193900 3221.8 3097.6 2649.4 2573.2 3030.7 2881.6 2250.19 1158.12 2567.2 3219.5 TRUE FALSE FALSE 2844.145488 3193.033384 2792.634578 2678.146218 2807.131299 2826.638281 2336.980582 1289.9557 2461.378929 3200.350271 0.888698188 0.997713723 0.872602791 0.836829094 0.87713252 0.883227785 0.730226502 0.403067037 0.76909673 1 11.6440141 -4.081674938 1.102386858 0.935357811 1.06E-13 0.798439624 0.072829533 0.575633874 0.431942808 0.009216655 0.684455566 8.29E-05 4.081674938 -0.935357811 down SLYASS(ph)PGGVYATR ddPTM_HeLa_CUDC101_4h_R1 3 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SLYAS(0.209)S(0.791)PGGVYATR;SLYAS(0.046)S(0.954)PGGVYATR;SLY(0.008)AS(0.065)S(0.923)PGGVYAT(0.004)R ;; 145.52 0.00036236 24365800 2718.3 9948.2 2782.36 4465.4 3103 3418.63 2511.5 2043.13 2868.19 3608.76 TRUE FALSE FALSE 2399.664995 10254.69225 2932.782798 4647.518313 2874.097872 3353.425329 2608.369396 2275.711661 2749.961994 3587.294935 0.668934403 2.858614203 0.817547163 1.295549543 0.801188061 0.934806139 0.727113171 0.634380976 0.766583747 1 11.80868065 -4.829045513 1.408537482 1.028009694 0.6217322 0.064698156 0.609019832 1.587345412 5.093338857 0.092458898 0.676742438 1.48E-05 4.829045513 -0.406277493 ANVS(ph)SPHREFPPATAR ddPTM_HeLa_CUDC101_4h_R1 1 ANVSSPHREFPPATAR 16 1 H0Y555;Q5QPM9;Q5QPM7;Q92530 H0Y555 PSMF1 Proteasome inhibitor PI31 subunit 1 0 ANVS(0.886)S(0.114)PHREFPPATAR 63.754 0.027211 35681000 574.79 388.28 443.35 510.17 493.25 572.88 614.01 585.84 480.3 600.05 TRUE FALSE FALSE 507.4139875 400.2424466 467.3188421 530.9769377 456.8639302 561.9532685 637.6925714 652.5296576 460.5018307 596.4808759 0.85067939 0.671006335 0.783459891 0.890182668 0.765932235 0.942114477 1.069091394 1.093965765 0.772031174 1 9.220332073 -4.826910082 3.587994125 0.883572567 1.086823985 0.457288387 0.098363273 0.200607255 5.091474415 0.016220834 0.058787678 1.49E-05 4.826910082 0.203251417 TS(ph)DSDQQAYLVQR ddPTM_HeLa_CUDC101_4h_R1 2 TSDSDQQAYLVQR 13 0 Q96CV9-3;Q96CV9-2;Q96CV9 Q96CV9-3 OPTN Optineurin 1 0 T(0.226)S(0.773)DS(0.001)DQQAYLVQR;T(0.226)S(0.773)DSDQQAYLVQR ; 196.97 1.81E-16 25908000 2571.8 2317.2 2285.72 3002 3114 3187.5 4088.8 3742.8 2928.1 2530 TRUE FALSE FALSE 2270.337503 2388.590185 2409.292937 3124.434536 2884.286424 3126.703748 4246.506386 4168.865223 2807.402479 2514.951447 0.902736116 0.949755983 0.957987853 1.242343879 1.146855708 1.243246167 1.688504321 1.657632487 1.116284961 1 11.29631483 -4.826805743 0.708805626 0.951775285 1.919755735 0.854345064 0.101709035 0.331411761 0.180126827 0.015440158 0.219310664 1.49E-05 4.826805743 0.96798045 EGFGLSENPFASLS(ph)PDEQKDEK ddPTM_HeLa_CUDC101_4h_R1 1 EGFGLSENPFASLSPDEQKDEK 22 1 B4DT96;C9JYA1;O15504-2;O15504 B4DT96 NUPL2 Nucleoporin-like protein 2 1 0 EGFGLSENPFAS(0.02)LS(0.98)PDEQKDEK 130.14 1.55E-07 20950000 1908.8 1863.8 1495.5 1660.4 1747.3 1608.6 1403.2 1311.5 1872.8 1814.8 TRUE FALSE FALSE 1685.053358 1921.221469 1576.351254 1728.118289 1618.40516 1577.918635 1457.321894 1460.795859 1795.602391 1804.005489 0.934062212 1.064975401 0.87380624 0.957934053 0.897117647 0.874675074 0.807825643 0.809751338 0.995341978 1 10.81698801 -4.826156603 0.514179005 0.9769413 0.727187092 0.683106581 0.045089726 1.13628335 0.288039541 0.009611571 0.152830678 1.49E-05 4.826156603 -0.249754208 GLLSDSMT(ph)DVPVDTGVAAR ddPTM_HeLa_CUDC101_4h_R1 2 GLLSDSMTDVPVDTGVAAR 19 0 O43399-2;O43399-4;O43399;O43399-3;O43399-5;O43399-7;A0A087WYR3;A0A087WZ51 O43399-2 TPD52L2 Tumor protein D54 1 0 GLLS(0.162)DS(0.099)MT(0.74)DVPVDTGVAAR;GLLSDS(0.222)MT(0.778)DVPVDTGVAAR ; 300.29 4.06E-123 23708000 4129.7 3265.7 2869.5 2693.2 3165.7 2260.56 2231.63 1391.14 3095.2 2869.8 TRUE FALSE FALSE 3645.622826 3366.312346 3024.63385 2803.040337 2932.172618 2217.443584 2317.704717 1549.501754 2967.614546 2852.730302 1.277941635 1.180031755 1.060259306 0.982581611 1.027847819 0.777305721 0.812451396 0.543164474 1.040271681 1 11.47812765 -4.826017914 0.727036937 1.134515753 0.468546858 0.800252716 0.089450055 0.610171844 0.353087733 0.02023192 0.282950169 1.49E-05 4.826017914 -0.665968894 GISS(ph)LPR ddPTM_HeLa_CUDC101_4h_R1 1 GISSLPR 7 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 E9PMS6 LMO7 LIM domain only protein 7 1 0 GIS(0.141)S(0.859)LPR 90.601 0.032744 31312000 8573.7 7168.1 7933.1 6802.4 7554.1 6172 5221.2 4024 6813.8 6883.7 TRUE FALSE FALSE 7568.703883 7388.940665 8361.987382 7079.831274 6996.849093 6054.279383 5422.583433 4482.075894 6532.93228 6842.755446 1.106090075 1.079819485 1.222020493 1.034646252 1.022519239 0.884772141 0.79245612 0.655010387 0.954722455 1 12.74036167 -4.824542356 1.245843774 1.06716646 0.640555464 0.808888577 0.067710744 0.206086617 0.480485458 0.010292946 0.086709466 1.50E-05 4.824542356 -0.426610995 TGSESS(ph)QTGTSTTSSR ddPTM_HeLa_CUDC101_4h_R1 1 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 T(0.193)GS(0.017)ES(0.126)S(0.638)QT(0.011)GT(0.011)S(0.001)TT(0.003)SSR 163.34 3.85E-05 84612000 838.73 674.16 609.37 940.41 848.78 950.34 1020.6 994.28 1041 1031.9 TRUE FALSE FALSE 740.4153408 694.9300705 642.3143854 978.7639846 786.1671904 932.2138479 1059.964884 1107.464816 998.0895394 1025.762213 0.721819669 0.67747677 0.626182538 0.954182141 0.766422452 0.90880112 1.033343664 1.079650627 0.973022331 1 10.00248062 -4.82345215 2.645899185 0.83297804 1.070926398 0.377773809 0.121120937 0.278345736 3.828753378 0.020553271 0.087499228 1.50E-05 4.82345215 0.237948359 SYS(ph)LSELSVLQAK ddPTM_HeLa_CUDC101_4h_R1 1 SYSLSELSVLQAK 13 0 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 S(0.008)YS(0.987)LS(0.005)ELSVLQAK 249.33 7.55E-56 193840000 2614.3 2714.2 2207.1 2255.4 2614.6 2686.5 2947.3 2764.5 2240.3 2729.5 TRUE FALSE FALSE 2307.855717 2797.821285 2326.422502 2347.384961 2421.726167 2635.259489 3060.978348 3079.199506 2147.953886 2713.264813 0.850582555 1.031164106 0.857425523 0.86515144 0.892550611 0.971250383 1.128153188 1.134868772 0.791649188 1 11.40581415 -4.823222827 3.47003878 0.923314 1.137145943 0.621588607 0.069984348 0.11621549 2.773471545 0.009644907 0.035605107 1.50E-05 4.823222827 0.213831943 FHSPS(ph)TTWSPNKDTPQEK ddPTM_HeLa_CUDC101_4h_R1 1 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 FHS(0.004)PS(0.343)T(0.343)T(0.244)WS(0.066)PNKDTPQEK 59.728 0.024163 51549000 2903.1 2298.9 2533.1 2369.6 3724.5 3160.1 3355.2 3375.4 3358.3 3368 TRUE FALSE FALSE 2562.803019 2369.726384 2670.047048 2466.24253 3449.751055 3099.826358 3484.611188 3759.641892 3219.869453 3347.966986 0.765480373 0.707810559 0.797512956 0.736638844 1.030401754 0.925883191 1.040814083 1.122962654 0.961738711 1 11.70906959 -4.82304581 1.150244353 0.858906149 1.134798169 0.458079506 0.102124681 0.675478688 1.276849938 0.019087018 0.175713347 1.50E-05 4.82304581 0.27589202 GLSAS(ph)TMDLSSSS ddPTM_HeLa_CUDC101_4h_R1 1 GLSASTMDLSSSS 13 0 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 GLS(0.02)AS(0.853)T(0.127)MDLSSSS 115.29 0.0032175 8496600 2682.6 1949.9 2315.8 1677.5 2384 2461.6 3338.7 2957.1 1882.7 2191 TRUE FALSE FALSE 2368.149695 2009.974108 2440.999153 1745.915701 2208.13707 2414.649081 3467.474777 3293.724311 1805.094309 2177.967835 1.087320785 0.922866755 1.120769147 0.801626026 1.013852011 1.108670681 1.592068865 1.512292449 0.828797506 1 11.08876693 -4.822428812 4.488122746 1.02073982 1.556114553 0.815804269 0.107221733 0.049634574 1.972973762 0.012291895 0.041206915 1.51E-05 4.822428812 0.535374733 KEPVVGGTLS(ph)PLALANK ddPTM_HeLa_CUDC101_4h_R1 2 KEPVVGGTLSPLALANK 17 1 J3KTM2;J3KRL7;O15534-4;O15534 J3KTM2 PER1 Period circadian protein homolog 1 1 0 KEPVVGGTLS(1)PLALANK;KEPVVGGT(0.013)LS(0.987)PLALANK ; 130.37 0.00013882 99325000 10680.2 9264.7 9854.5 9298.6 10533.3 9095.4 8016.6 6991.3 8934.1 9700.4 TRUE FALSE FALSE 9428.283146 9550.134426 10387.26408 9677.8371 9756.279444 8921.920399 8325.802947 7787.161332 8565.832617 9642.701589 0.977763655 0.990400287 1.077215133 1.003643741 1.011778634 0.925251115 0.86343053 0.807570499 0.888322898 1 13.23522169 -4.821508213 1.819862446 0.998566913 0.812529985 0.668692284 0.044500496 0.114256186 0.686531857 0.004369804 0.025011444 1.51E-05 4.821508213 -0.186036929 DLVLPTQALPAS(ph)PALK ddPTM_HeLa_CUDC101_4h_R1 2 DLVLPTQALPASPALK 16 0 J3KSZ6;U3KQ35;H3BR06;Q15554 J3KSZ6 TERF2 Telomeric repeat-binding factor 2 1 0 DLVLPT(0.001)QALPAS(0.999)PALK;DLVLPTQALPAS(1)PALK ; 243.23 2.60E-45 311990000 17779.5 15805.9 14916.1 14165.4 15230.1 13719.1 12376.6 10115.9 15184.9 15831.4 TRUE FALSE FALSE 15695.41396 16292.86104 15722.50948 14743.12624 14106.60587 13457.43103 12853.96961 11267.45317 14558.97199 15737.23413 0.997342597 1.035306516 0.999064344 0.936830838 0.896384063 0.855133177 0.816787086 0.715974171 0.92512902 1 13.94189438 -4.821198155 0.657853964 1.003916522 0.657951041 0.886540156 0.031819066 0.255947711 0.115355352 0.003835698 0.057425288 1.51E-05 4.821198155 -0.345965482 KASPEAAST(ph)PRDPIDVDLDVSNTTTAQK ddPTM_HeLa_CUDC101_4h_R1 1 KASPEAASTPRDPIDVDLDVSNTTTAQK 28 2 P29590-11;P29590-12;P29590-13;H3BT57;H3BUJ5 P29590-11 PML Protein PML 1 0 KAS(0.217)PEAAS(0.217)T(0.566)PRDPIDVDLDVSNTTTAQK 86.997 2.21E-05 0 926.08 906.59 775.64 661.33 948.65 879.14 970.56 855.01 688.11 895.13 TRUE FALSE FALSE 817.5263062 934.5209633 817.5734446 688.3018959 878.6699795 862.3718692 1007.994824 952.3408823 659.7458146 889.805727 0.918769436 1.050252808 0.918822412 0.773541769 0.987485192 0.969168711 1.132825732 1.07027956 0.741449279 1 9.797346574 -4.818885824 6.122633696 0.952517863 1.101280308 0.320645575 0.096966019 0.134846832 10.21382501 0.010231102 0.0320042 1.52E-05 4.818885824 0.148762445 DLYANTVLSGGT(ph)TMYPGIADR ddPTM_HeLa_CUDC101_4h_R1 1 DLYANTVLSGGTTMYPGIADR 21 0 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 DLYANT(0.043)VLS(0.043)GGT(0.457)T(0.457)MYPGIADR 183.21 1.84E-12 11856000 2007.9 1901.1 2033.8 1728.9 2102.7 2089.8 2246.4 2040.5 1919.9 2268.5 TRUE FALSE FALSE 1772.537006 1959.670638 2143.75338 1799.412015 1947.58801 2049.940547 2333.0444 2272.782272 1840.760909 2255.006861 0.786045061 0.869030898 0.950663795 0.797962989 0.863672765 0.909061778 1.034606342 1.007882642 0.816299472 1 11.13891611 -4.818753213 5.046505648 0.888704643 1.021685795 0.442759129 0.064632123 0.181971118 9.35288249 0.011942523 0.038858063 1.52E-05 4.818753213 0.132981152 QDFS(ph)LS(ph)VALDGGSMLVT(ph)YPYDK ddPTM_HeLa_CUDC101_4h_R1 1 QDFSLSVALDGGSMLVTYPYDK 22 0 O75976;O75976-2;J3QRJ9 O75976 CPD Carboxypeptidase D 3 0 QDFS(0.813)LS(0.959)VALDGGS(0.234)MLVT(0.35)Y(0.322)PY(0.322)DK 41.912 0.028772 12894000 3701.6 3261.9 2979.2 3338.2 3796.9 3223.9 2699.9 2371.3 3811.3 3576 TRUE FALSE FALSE 3267.704059 3362.395273 3140.264564 3474.346225 3516.810251 3162.409479 2804.036047 2641.239207 3654.196601 3554.729793 0.91925526 0.94589335 0.883404575 0.97738687 0.989332652 0.88963428 0.788818338 0.74302109 1.027981538 1 11.79552418 -4.818031567 2.374673879 0.956501969 0.749924801 0.794847874 0.03987349 0.100296087 1.096457397 0.005777369 0.026637663 1.52E-05 4.818031567 -0.206577168 (ac)S(ph)AEVPEAASAEEQKEMEDKVTSPEKAEEAK ddPTM_HeLa_CUDC101_4h_R1 1 SAEVPEAASAEEQKEMEDKVTSPEKAEEAK 30 3 P56211 P56211 ARPP19 cAMP-regulated phosphoprotein 19 1 0 S(0.385)AEVPEAAS(0.048)AEEQKEMEDKVT(0.284)S(0.284)PEKAEEAK 45.596 0.003055 804320000 7064.9 6445.3 6809.6 6843.4 7891.8 6175.6 5009.3 3985 8135.5 7916.9 TRUE FALSE FALSE 6236.763132 6643.872053 7177.747574 7122.503432 7309.637637 6057.810719 5202.510379 4438.636292 7800.151247 7869.809927 0.792492219 0.844222683 0.91206111 0.905041354 0.928820099 0.769753117 0.661071923 0.564008068 0.99114862 1 12.94211308 -4.817641842 1.813163045 0.898257071 0.571456599 0.797145904 0.060603568 0.175310557 1.04278641 0.011674496 0.067499746 1.52E-05 4.817641842 -0.326800472 LS(ph)NGSFSAPSLTNSR ddPTM_HeLa_CUDC101_4h_R1 4 LSNGSFSAPSLTNSR 15 0 O94806;O94806-2 O94806 PRKD3 Serine/threonine-protein kinase D3 1 0 LS(0.976)NGS(0.022)FS(0.001)APSLTNSR;LS(0.959)NGS(0.04)FS(0.001)APSLTNSR;LS(0.897)NGS(0.098)FSAPS(0.003)LT(0.001)NSR;LS(0.994)NGS(0.006)FSAPSLTNSR ;;; 130.47 0.00067091 79682600 4594.01 3887.77 3730.09 3888.16 4205.01 3756.3 2995.86 2637.71 4130.85 4016.4 TRUE FALSE FALSE 4055.507112 4007.547586 3931.749948 4046.735971 3894.81479 3684.654836 3111.411324 2937.976244 3960.574615 3992.510274 1.015778754 1.00376638 0.984781423 1.013581855 0.975530311 0.922891761 0.779312039 0.735871931 0.992001108 1 11.9630804 -4.816100586 1.57154772 1.005646494 0.719407035 0.985229705 0.011690008 0.034822671 0.146255898 0.001659764 0.011091681 1.53E-05 4.816100586 -0.286239459 S(ph)SPETGTTGDVAWQISPK ddPTM_HeLa_CUDC101_4h_R1 1 SSPETGTTGDVAWQISPK 18 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 S(0.5)S(0.5)PETGTTGDVAWQISPK 162.79 1.85E-05 8799400 2294 1871.9 1989.5 1892.2 1873.2 2359.5 2210.8 2323.8 2030.4 2071.8 TRUE FALSE FALSE 2025.100797 1929.57102 2097.058388 1969.372095 1735.017768 2314.496469 2296.071297 2588.331999 1946.706053 2059.476841 0.983308361 0.936922903 1.018248103 0.956248721 0.842455585 1.123827383 1.114880852 1.256791019 0.945242993 1 11.00806219 -4.815007981 2.055092178 0.979018867 1.218281564 0.706330763 0.0607401 0.144011736 1.143774459 0.008186893 0.042474774 1.53E-05 4.815007981 0.239262696 GLLSDS(ph)MTDVPVDTGVAAR ddPTM_HeLa_CUDC101_4h_R1 9 GLLSDSMTDVPVDTGVAAR 19 0 O43399-2;O43399-4;O43399;O43399-3;O43399-5;O43399-7;A0A087WYR3;A0A087WZ51 O43399-2 TPD52L2 Tumor protein D54 1 0 GLLS(0.002)DS(0.99)MT(0.008)DVPVDTGVAAR;GLLS(0.014)DS(0.961)MT(0.024)DVPVDT(0.001)GVAAR;GLLS(0.03)DS(0.952)MT(0.018)DVPVDTGVAAR;GLLS(0.007)DS(0.992)MT(0.002)DVPVDTGVAAR;GLLS(0.01)DS(0.919)MT(0.071)DVPVDTGVAAR;GLLS(0.027)DS(0.665)MT(0.308)DVPVDTGVAAR;GLLS(0.018)DS(0.865)MT(0.117)DVPVDTGVAAR;GLLS(0.013)DS(0.76)MT(0.227)DVPVDTGVAAR;GLLS(0.013)DS(0.86)MT(0.127)DVPVDTGVAAR ;;;;;;;; 234.36 6.27E-44 342545800 28810.12 21767.35 22088.36 19976.69 21701.65 18110.24 16900.13 11880.92 21331.74 24845.72 TRUE FALSE FALSE 25433.04141 22437.97625 23282.52356 20791.42576 20100.76252 17764.81735 17551.97368 13233.39591 20452.43665 24697.93655 1.029763817 0.908495987 0.942691042 0.841828455 0.813864044 0.719283464 0.710665591 0.535809778 0.828103052 1 14.59210289 -4.812481358 0.438967239 1.021675673 0.382274085 0.760861631 0.069334378 0.478791894 0.085253073 0.009256752 0.146114014 1.54E-05 4.812481358 -0.639401588 AQS(ph)GSDSSPEPK ddPTM_HeLa_CUDC101_4h_R1 2 AQSGSDSSPEPK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQS(0.997)GS(0.003)DSSPEPK;AQS(0.891)GS(0.067)DS(0.018)S(0.024)PEPK ; 128.73 0.0018908 11773600 5956.7 3051.6 5620.5 6211.1 3960.5 3215.7 3731.4 1820.11 5853.6 6797.9 TRUE FALSE FALSE 5258.464656 3145.616179 5924.361231 6464.415505 3668.341805 3154.36588 3875.321348 2027.303965 5612.31213 6757.465788 0.77817111 0.465502346 0.876713463 0.956633109 0.542857622 0.466797166 0.57348738 0.300009505 0.830535042 1 12.72226659 -4.812160307 0.183327624 1.052278985 1.23E-16 0.501890268 0.160307793 7.58455922 0.310495069 0.301156587 1.926624889 1.54E-05 4.812160307 -1.052278985 MIS(ph)TPS(ph)PKK ddPTM_HeLa_CUDC101_4h_R1 1 MISTPSPKK 9 1 Q53F19;Q53F19-2 Q53F19 C17orf85 Uncharacterized protein C17orf85 2 0 MIS(0.774)T(0.24)PS(0.986)PKK 99.568 0.035494 27761000 4264.3 3721.8 3570.3 3973.6 3913 3326.2 2507.9 2004.2 4253 4275.8 TRUE FALSE FALSE 3764.445218 3836.464247 3763.321218 4135.660583 3624.345786 3262.758277 2604.630543 2232.350027 4077.68954 4250.367351 0.885675262 0.902619451 0.885410814 0.973012505 0.852713539 0.767641478 0.612801278 0.525213433 0.959373438 1 12.05337182 -4.812150085 1.059664463 0.939850098 0.466932054 0.936079932 0.037635395 0.187233522 0.283199315 0.007784596 0.079791307 1.54E-05 4.812150085 -0.472918044 SSGGREDLES(ph)SGLQR ddPTM_HeLa_CUDC101_4h_R1 2 SSGGREDLESSGLQR 15 1 Q9UK76-3;Q9UK76;J3KSH8;J3KT51;Q9UK76-2 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 SSGGREDLES(0.5)S(0.5)GLQR;SSGGREDLES(0.749)S(0.251)GLQR ; 92.427 0.0053037 273700000 2502.8 1949.68 2288.57 2386.4 2310.5 2469.1 3166.8 2893.1 2382.5 2300 TRUE FALSE FALSE 2209.425578 2009.74733 2412.297017 2483.727707 2140.059018 2422.006031 3288.944537 3222.43881 2284.292342 2286.319498 0.966367815 0.879031707 1.055100575 1.08634323 0.936027979 1.059347144 1.43853234 1.409443786 0.999113354 1 11.15881131 -4.811776974 4.323709008 0.986775106 1.42972866 0.904044901 0.055848245 0.038392183 1.479573076 0.007761638 0.026623361 1.54E-05 4.811776974 0.442953554 GAEETSWS(ph)GEER ddPTM_HeLa_CUDC101_4h_R1 2 GAEETSWSGEER 12 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 GAEETS(0.004)WS(0.995)GEER;GAEETS(0.003)WS(0.997)GEER ; 155.86 0.00018922 210858000 2252.3 2190.59 1858.97 1714.44 2137.88 1981.77 2249.11 1763.87 2134.52 1960.53 TRUE FALSE FALSE 1988.288808 2258.079481 1959.471541 1784.362274 1980.172852 1943.971039 2335.858926 1964.661831 2046.534182 1948.86868 1.020227185 1.158661691 1.005440521 0.915588768 1.01606274 0.997486931 1.19857174 1.008103753 1.050113947 1 10.92842117 -4.809560015 24.9999899 1.013206482 1.103339162 0.172488863 0.071222853 110.6236648 57471.78187 0.009325443 0.027976436 1.55E-05 4.809560015 0.090132679 GVEPSPS(ph)PIKPGDIK ddPTM_HeLa_CUDC101_4h_R1 2 GVEPSPSPIKPGDIK 15 1 Q92890;Q92890-1;Q92890-3;C9JNP9 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 0 GVEPS(0.004)PS(0.996)PIKPGDIK;GVEPS(0.341)PS(0.659)PIKPGDIK ; 157.74 0.00042006 67012000 7947.7 6288.6 7284.8 6597.7 6031.5 5874.6 4675.7 3430.4 7226.4 9302.4 TRUE FALSE FALSE 7016.082654 6482.344312 7678.638323 6866.782724 5586.568261 5762.551793 4856.043315 3820.90287 6928.524733 9247.068911 0.758735846 0.701016114 0.83038619 0.742590197 0.604144764 0.623176041 0.52514406 0.413201514 0.749267125 1 13.17478042 -4.809471968 0.138652874 1.127790311 7.29E-17 0.664086866 0.090224239 5.648986481 0.163257534 0.286014329 1.273901879 1.55E-05 4.809471968 -1.127790311 S(ph)AEEEAADLPTKPTK ddPTM_HeLa_CUDC101_4h_R1 1 SAEEEAADLPTKPTK 15 1 Q8WW12;Q8WW12-2 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 0 S(1)AEEEAADLPTKPTK 182.35 5.95E-10 9991700 1010.7 948.36 818.31 990.16 995.65 1054.3 1223.9 1172.1 1000.8 1032.3 TRUE FALSE FALSE 892.2272781 977.5778475 862.5503139 1030.543005 922.2028831 1034.190984 1271.106233 1305.527126 959.5466004 1026.159834 0.869481779 0.952656512 0.840561368 1.004271431 0.898693218 1.007826413 1.238701995 1.272245398 0.935084934 1 10.00303975 -4.808139391 3.034187902 0.933589042 1.270600293 0.873861149 0.048995611 0.070232464 1.285610426 0.008223993 0.032984475 1.56E-05 4.808139391 0.337011251 TVT(ph)NAVVTVPAYFNDSQR ddPTM_HeLa_CUDC101_4h_R1 1 TVTNAVVTVPAYFNDSQR 18 0 P11142;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 0 T(0.021)VT(0.979)NAVVTVPAYFNDSQR 112.82 0.00024757 0 638.51 480.3 480.35 504.13 457.04 532.5 582.2 517.53 399.88 488.9 TRUE FALSE FALSE 563.6648257 495.0974737 506.319174 524.6906004 423.3250698 522.3434497 604.655649 576.4435233 383.3967771 485.9920011 1.159823257 1.018735849 1.041826147 1.079628058 0.871053575 1.074798451 1.244167903 1.186117306 0.788895242 1 8.924788758 -4.808098026 6.761786444 1.055858164 1.214990445 0.288268971 0.111092767 0.144967941 15.81185365 0.011910509 0.036989438 1.56E-05 4.808098026 0.15913228 SNT(ph)PESIAETPPAR ddPTM_HeLa_CUDC101_4h_R1 2 SNTPESIAETPPAR 14 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(0.091)NT(0.897)PES(0.005)IAET(0.007)PPAR;S(0.019)NT(0.818)PES(0.001)IAET(0.162)PPAR ; 124.5 0.0057478 103384000 4795.6 4610.5 4829.6 3893.1 4797 4201.4 3115.3 2933.8 4194.9 4151.9 TRUE FALSE FALSE 4233.467038 4752.54404 5090.702785 4051.877445 4443.134867 4121.265295 3235.458165 3267.771933 4021.984446 4127.204314 1.025746902 1.151516542 1.233450636 0.981748694 1.076548319 0.998561007 0.783934576 0.791764033 0.974505777 1 12.01094914 -4.808095821 4.185264211 1.041342608 0.783636908 0.653512138 0.077864055 0.100649064 3.66008231 0.011598574 0.04040715 1.56E-05 4.808095821 -0.2577057 GFGEYSRS(ph)PTF ddPTM_HeLa_CUDC101_4h_R1 1 GFGEYSRSPTF 11 1 D6REL5;Q6UWZ7-2;Q6UWZ7 D6REL5 FAM175A BRCA1-A complex subunit Abraxas 1 0 GFGEYS(0.002)RS(0.998)PTF 108.9 0.036526 14772000 2721 3018.2 2714.9 2841.2 3159.7 3092.8 2930.9 3637.9 2741.6 1728.5 TRUE FALSE FALSE 2402.048505 3111.187165 2861.675706 2957.076417 2926.615226 3033.809993 3043.945795 4052.023831 2628.590088 1718.218805 1.397987554 1.810704874 1.665489691 1.721012718 1.703284365 1.76567151 1.771570527 2.358269982 1.529834314 1 10.74669805 -4.808091837 0.079372758 1.42E-10 3.831893951 0.515564949 0.226519464 18.40666374 0.286430199 4.248361704 10.53447912 1.56E-05 4.808091837 3.831893951 SGTPT(ph)QDEMMDKPTSSSVDTMSLLSK ddPTM_HeLa_CUDC101_4h_R1 4 SGTPTQDEMMDKPTSSSVDTMSLLSK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 S(0.082)GT(0.432)PT(0.474)QDEMMDKPT(0.004)S(0.004)S(0.002)S(0.002)VDT(0.001)MSLLSK;S(0.035)GT(0.305)PT(0.643)QDEMMDKPT(0.004)S(0.004)S(0.005)S(0.003)VDT(0.001)MSLLSK;S(0.098)GT(0.311)PT(0.343)QDEMMDKPT(0.039)S(0.039)S(0.039)S(0.039)VDT(0.044)MS(0.044)LLS(0.001)K;S(0.027)GT(0.084)PT(0.422)QDEMMDKPT(0.086)S(0.16)S(0.16)S(0.043)VDT(0.016)MS(0.001)LLSK ;;; 75.887 0.00022734 153088000 6384.9 6275.3 5843.5 5507.8 7144.6 6436.7 7048.7 6269.1 6902.1 6798 TRUE FALSE FALSE 5636.471701 6468.634555 6159.417286 5732.431891 6617.557092 6313.930672 7320.57072 6982.749003 6617.592517 6757.565194 0.834098013 0.957243381 0.9114847 0.848298422 0.97928128 0.934349946 1.083314849 1.033323217 0.979286522 1 12.72228781 -4.807214023 6.432650543 0.921154845 1.058265673 0.470733666 0.053519888 0.128560556 12.75775804 0.009330916 0.029202481 1.56E-05 4.807214023 0.137110828 ATSSS(ph)SGSLSATGR ddPTM_HeLa_CUDC101_4h_R1 2 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 ATS(0.006)S(0.071)S(0.921)S(0.001)GSLSATGR;AT(0.001)S(0.011)S(0.131)S(0.856)S(0.001)GSLSATGR ; 225.72 6.24E-33 60179000 5023 4538.9 4147.8 4254.1 4535.1 4101.9 3041.2 2673.7 4285.2 4516.6 TRUE FALSE FALSE 4434.211554 4678.738129 4372.042614 4427.600586 4200.554708 4023.663092 3158.500103 2978.063201 4108.562242 4489.735062 0.987633233 1.042096708 0.973786327 0.98616077 0.935590775 0.896191654 0.703493649 0.663304885 0.915101267 1 12.1324146 -4.80702777 1.305348566 0.995772541 0.621987857 0.918728337 0.034425262 0.069483361 0.180899271 0.003198597 0.026500969 1.56E-05 4.80702777 -0.373784684 AEELSPAALS(ph)PSLEPIR ddPTM_HeLa_CUDC101_4h_R1 2 AEELSPAALSPSLEPIR 17 0 A0A2R8YFR7;Q12774;A0A2R8YF49;A0A5F9ZGZ6 A0A2R8YFR7 ARHGEF5 Rho guanine nucleotide exchange factor 5 1 0 AEELS(0.009)PAALS(0.944)PS(0.047)LEPIR;AEELS(0.001)PAALS(0.935)PS(0.064)LEPIR ; 88.951 0.007543 15852200 3307.1 2718.47 3035.04 3305.3 3768.7 3827.2 3718.2 3853 3513.5 3710.1 TRUE FALSE FALSE 2919.446751 2802.222839 3199.123443 3440.104421 3490.690509 3754.202537 3861.61222 4291.609946 3368.672043 3688.03216 0.791600134 0.759815185 0.867433716 0.93277506 0.946491342 1.01794192 1.047065766 1.163658493 0.913406363 1 11.84863552 -4.806831992 0.955420627 0.886034996 1.182883658 0.676228286 0.065264201 0.675896184 0.776368394 0.014749897 0.169523146 1.56E-05 4.806831992 0.296848662 T(ph)RSEPLPPSATAPPPPGPMQPR ddPTM_HeLa_CUDC101_4h_R1 2 TRSEPLPPSATAPPPPGPMQPR 22 1 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;Q8WUI4-10 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 T(0.5)RS(0.5)EPLPPSATAPPPPGPMQPR;T(0.853)RS(0.141)EPLPPS(0.005)AT(0.001)APPPPGPMQPR ; 104.68 6.00E-05 76434000 1003.43 880.64 777.62 867.09 726.04 917.31 939.39 877.6 833.29 917.78 TRUE FALSE FALSE 885.8094565 907.7714746 819.6604894 902.4536781 672.4814757 899.8138401 975.622587 977.5024366 798.9414335 912.3210037 0.970940549 0.995013236 0.898434308 0.989184371 0.737110593 0.98629083 1.069385209 1.071445722 0.875724038 1 9.833397721 -4.806151772 5.143801977 0.962323136 1.071295132 0.264383148 0.08111419 0.196071975 11.62387983 0.010927147 0.035819478 1.56E-05 4.806151772 0.108971996 SKPYEGS(ph)QRNSTELAPPLPVR ddPTM_HeLa_CUDC101_4h_R1 1 SKPYEGSQRNSTELAPPLPVR 21 2 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 S(0.034)KPY(0.311)EGS(0.567)QRNS(0.064)T(0.024)ELAPPLPVR 60.618 0.014561 14697000 345.95 503.64 332.86 289.14 504.46 291.82 209.63 139.96 288.93 367.85 TRUE FALSE FALSE 305.3982654 519.1565514 350.8554184 300.932379 467.2469908 286.2540197 217.7154993 155.8924807 277.0201831 365.6620118 0.835192761 1.419771632 0.959507433 0.822979607 1.277811136 0.782837731 0.595400923 0.42632944 0.75758535 1 8.514366944 -4.805694842 2.71493489 0.975616112 0.474059398 0.498443023 0.198579453 0.169043578 2.452964433 0.026695128 0.114471463 1.56E-05 4.805694842 -0.501556714 SQGSPEDSAPQAS(ph)PGPSK ddPTM_HeLa_CUDC101_4h_R1 2 SQGSPEDSAPQASPGPSK 18 0 Q9P107-2;Q9P107 Q9P107-2 GMIP GEM-interacting protein 1 0 SQGSPEDSAPQAS(1)PGPSK;SQGSPEDSAPQAS(1)PGPSK ; 290.88 1.61E-104 12140800 5144.5 4463.1 3854.4 4375 4430.6 3914.6 3268.4 2741.1 4409.7 4289.3 TRUE FALSE FALSE 4541.469509 4600.602821 4062.780523 4553.43141 4103.763465 3839.935527 3394.463283 3053.135744 4227.9303 4263.787053 1.06512578 1.07899451 0.952857277 1.067931244 0.962469142 0.900592708 0.796114637 0.716061967 0.991590398 1 12.05791967 -4.805110651 1.061445658 1.03259781 0.677019752 0.884408342 0.038606617 0.193394672 0.292345405 0.005997351 0.062202974 1.57E-05 4.805110651 -0.355578059 HREDS(ph)DVEMVEDDSRK ddPTM_HeLa_CUDC101_4h_R1 2 HREDSDVEMVEDDSRK 16 2 H0Y4N0;H0Y806;E7EUC9;A0A087WX20;A0A669KB03;A0A669KBB4;A0A669KBK2;H0Y818;A0A669KAW3;P40692-2;P40692-3;P40692 H0Y4N0 MLH1 DNA mismatch repair protein Mlh1 1 0 HREDS(1)DVEMVEDDSRK;HREDS(1)DVEMVEDDSRK ; 60.826 0.023465 82275000 6173.3 4995.2 4644.3 5087.4 5550.4 5426.3 5754.2 5145.2 5293.3 5240.7 TRUE FALSE FALSE 5449.675132 5149.096191 4895.384906 5294.886162 5140.95805 5322.802368 5976.141422 5730.90877 5075.107934 5209.528083 1.046097659 0.988399738 0.939698343 1.016384992 0.986837573 1.021743675 1.147156005 1.100082134 0.97419725 1 12.34693697 -4.80510824 7.14520654 1.010891914 1.123504636 0.705680924 0.03176412 0.083021654 10.74468452 0.004723512 0.014603152 1.57E-05 4.80510824 0.112612722 ELS(ph)LDDPEVEQVSGR ddPTM_HeLa_CUDC101_4h_R1 1 ELSLDDPEVEQVSGR 15 0 L7N2F4;C9J5N1;Q9BTE6;Q9BTE6-2;Q9BTE6-3 L7N2F4 AARSD1;PTGES3L-AARSD1 Alanyl-tRNA editing protein Aarsd1 1 0 ELS(1)LDDPEVEQVSGR 191.51 1.95E-11 4563200 1439.3 1190.3 1035.7 1191.2 1399.9 1372 1499.7 1391 1237.6 1428.5 TRUE FALSE FALSE 1270.587436 1226.971732 1091.693075 1239.782285 1296.632166 1345.831386 1557.543931 1549.345817 1186.585604 1420.003218 0.894777856 0.864062642 0.768796198 0.873084137 0.913119174 0.947766433 1.096859437 1.091086131 0.835621771 1 10.47167848 -4.804364728 4.212019368 0.920920449 1.096932686 0.58149324 0.065652475 0.137125731 5.122963988 0.010865024 0.037936978 1.57E-05 4.804364728 0.176012237 S(ph)SGPYGGGGQYFAKPR ddPTM_HeLa_CUDC101_4h_R1 2 SSGPYGGGGQYFAKPR 16 1 F8W6I7;P09651-3;P09651-2;P09651;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.986)S(0.014)GPYGGGGQYFAKPR;S(0.974)S(0.023)GPY(0.003)GGGGQYFAKPR ; 214.48 3.60E-23 82940000 7823.7 6519 5714.7 6487.7 6745.5 5884.4 5035.7 2427.8 6475.6 5477.6 TRUE FALSE FALSE 6906.617746 6719.842663 6023.653968 6752.296448 6247.897904 5772.164874 5229.928636 2704.170938 6208.673027 5445.018992 1.268428587 1.234126579 1.106268679 1.24008685 1.147451995 1.060081679 0.960497777 0.496632049 1.140248186 1 12.41072137 -4.080356213 1.413771242 1.145101432 4.05E-13 0.873200232 0.075790772 0.672140429 0.861934385 0.015855492 1.224635837 8.31E-05 4.080356213 -1.145101432 down SRT(ph)GS(ph)ESS(ph)QTGTSTTSSR ddPTM_HeLa_CUDC101_4h_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 3 0 S(0.374)RT(0.706)GS(0.65)ES(0.293)S(0.84)QT(0.12)GT(0.01)S(0.003)T(0.001)TSSR 88.57 0.0083787 10624000 3005.8 2738.3 2373.1 2544.9 3142.2 3101.4 3878.5 3779.3 2477.1 2528.8 TRUE FALSE FALSE 2653.46468 2822.663777 2501.396964 2648.692022 2910.406166 3042.245962 4028.095044 4209.520236 2374.99289 2513.758585 1.055576576 1.122885783 0.995082415 1.053677962 1.157790642 1.21023792 1.602419209 1.674592087 0.944797525 1 11.29563039 -4.799431737 1.351912397 1.035119031 1.752756018 0.944304096 0.056887848 0.079613094 0.225919132 0.00736527 0.059629841 1.59E-05 4.799431737 0.717636986 GGIDNPAITS(ph)DQELDDKK ddPTM_HeLa_CUDC101_4h_R1 2 GGIDNPAITSDQELDDKK 18 1 H0YK04;Q13017-2;Q13017;A0A0A0MSK6 H0YK04 ARHGAP5 Rho GTPase-activating protein 5 1 0 GGIDNPAIT(0.09)S(0.91)DQELDDKK;GGIDNPAIT(0.103)S(0.897)DQELDDKK ; 126.62 3.96E-05 519030000 5384.2 4469.2 4794 4361.6 5336.2 4086.4 4225.4 4108.9 4475.2 5029.8 TRUE FALSE FALSE 4753.072238 4606.890755 5053.178141 4539.4849 4942.559157 4008.458728 4388.375093 4576.640567 4290.730362 4999.882526 0.950636783 0.921399799 1.010659373 0.907918311 0.988535057 0.801710582 0.87769564 0.915349619 0.858166235 1 12.28767848 -4.799342269 0.221065378 1.002481613 0.786811784 0 0.064211183 7.082532658 0.373051434 0.050927263 0.423546548 1.59E-05 4.799342269 -0.215669829 RLAS(ph)TSDIEEK ddPTM_HeLa_CUDC101_4h_R1 2 RLASTSDIEEK 11 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIS4;H0YHI8;A0A3B3ISH4;F8VZN8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 RLAS(0.836)T(0.1)S(0.064)DIEEK;RLAS(0.443)T(0.443)S(0.114)DIEEK ; 178.22 2.48E-15 36364000 4726.5 4471.8 4485.1 5487.1 6356.1 6469.2 8713.2 8406.6 4182.8 5478.2 TRUE FALSE FALSE 4172.466835 4609.570858 4727.578073 5710.887655 5887.223166 6345.810788 9049.271043 9363.573363 4010.383214 5445.615423 0.766206666 0.846473814 0.868143948 1.048712994 1.081094185 1.165306452 1.661753602 1.719470186 0.736442606 1 12.41087939 -4.797611868 0.971483662 0.885811118 1.913914818 0.914104174 0.096184512 0.218760697 0.260708633 0.016749739 0.192741323 1.59E-05 4.797611868 1.0281037 Y(ph)GPIYS(ph)VRMGTK ddPTM_HeLa_CUDC101_4h_R1 1 YGPIYSVRMGTK 12 1 A0A1W2PQ28;A0A1W2PRY0;A0A1W2PQT5;A0A1W2PRK7;P05093 A0A1W2PQ28 CYP17A1 "Steroid 17-alpha-hydroxylase/17,20 lyase" 2 0 Y(1)GPIY(0.409)S(0.59)VRMGT(0.002)K 60.019 0.0032981 0 879.53 871.99 875.67 553.76 607.19 834.4 833.67 834.52 943.19 747.8 TRUE FALSE FALSE 776.4328267 898.8549783 923.011369 576.3447264 562.3988034 818.4852102 865.8249312 929.5183836 904.311309 743.3520523 1.044502163 1.209191493 1.241688062 0.775332125 0.756571266 1.101073452 1.164757571 1.250441672 1.216531664 1 9.537901824 -4.797186663 3.247887447 1.016658107 1.219637715 0.144286569 0.161043924 0.293027661 6.218838213 0.021791419 0.085581218 1.60E-05 4.797186663 0.202979608 EALS(ph)PCPSTVSTK ddPTM_HeLa_CUDC101_4h_R1 2 EALSPCPSTVSTK 13 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 EALS(0.997)PCPS(0.002)T(0.001)VSTK;EALS(0.994)PCPS(0.005)TVSTK ; 170.26 4.88E-07 112782000 12670.5 10523.6 10569.6 9523.7 10936.3 8836.7 7859.9 6149.7 10706.5 9240 TRUE FALSE FALSE 11185.2832 10847.81964 11141.02455 9912.117651 10129.55094 8668.15467 8163.058976 6849.75699 10265.17354 9185.040069 1.217771846 1.181031281 1.212953287 1.079158891 1.102831437 0.943725297 0.888734171 0.745751454 1.117597034 1 13.1650703 -4.797107231 1.212837109 1.120346355 0.732188551 0.804523575 0.064441208 0.337736648 0.720872987 0.014098055 0.128956537 1.60E-05 4.797107231 -0.388157804 TTPSYVAFT(ph)DTER ddPTM_HeLa_CUDC101_4h_R1 1 TTPSYVAFTDTER 13 0 P11142;E9PKE3;P11142-2;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65;P54652;P17066;P48741;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;Q53FA3;P34931 P11142;P54652;P17066;A0A0G2JIW1;Q53FA3 HSPA8;HSPA2;HSPA6;HSPA7;HSPA1B;HSPA1A;HSPA1L Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 1 0 T(0.001)T(0.003)PS(0.368)YVAFT(0.579)DT(0.05)ER 187.62 1.90E-10 24470000 876.39 800.69 884.56 554.59 1129.5 766.6 572.33 497.44 727.97 828.25 TRUE FALSE FALSE 773.6608927 825.3583098 932.3819892 577.2085773 1046.179035 751.9783822 594.4049598 554.0665589 697.9627685 823.3235322 0.939680287 1.002471419 1.132461241 0.701071395 1.270677922 0.91334494 0.721957938 0.672963346 0.847738151 1 9.685315651 -4.796563205 3.945104128 0.985374226 0.688760406 0.382380168 0.143872586 0.134985572 4.424642219 0.017172089 0.062040169 1.60E-05 4.796563205 -0.296613821 TVSDNS(ph)LSNSR ddPTM_HeLa_CUDC101_4h_R1 1 TVSDNSLSNSR 11 0 H0Y7W6;B7ZL14;Q96RU3-4;Q96RU3-3;Q96RU3-5;Q96RU3-2;Q96RU3 H0Y7W6;Q96RU3-5 FNBP1 Formin-binding protein 1 1 0 T(0.014)VS(0.084)DNS(0.896)LS(0.006)NSR 152.38 0.00047718 207360000 2347.1 1845.3 2314.9 2301 2118 2191.3 1669.4 1879.7 2065.9 2205.5 TRUE FALSE FALSE 2071.976496 1902.151506 2440.050496 2394.844726 1961.75936 2149.504603 1733.789317 2093.67745 1980.742728 2192.381588 0.94508023 0.867618811 1.112967975 1.092348494 0.894807442 0.980442736 0.790824611 0.954978577 0.90346623 1 11.09828321 -4.796508294 24.67337894 0.97899545 0.8729016 0.18742 0.084297916 149.6313853 105275.7717 0.011051998 0.033158119 1.60E-05 4.796508294 -0.10609385 KLGDVS(ph)PTQIDVSQFGSFK ddPTM_HeLa_CUDC101_4h_R1 2 KLGDVSPTQIDVSQFGSFK 19 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KLGDVS(0.767)PT(0.233)QIDVSQFGSFK;KLGDVS(0.756)PT(0.244)QIDVSQFGSFK ; 147.08 2.54E-05 1424190000 10745.5 9042.1 8569.5 8781.6 9443.9 9589.4 9841.5 9112.3 9514.3 9335 TRUE FALSE FALSE 9485.928779 9320.676383 9032.793091 9139.751605 8747.242312 9406.498172 10221.08995 10149.6074 9122.116527 9279.475005 1.022248433 1.004440055 0.973416393 0.984942747 0.942644094 1.013688616 1.101472868 1.093769571 0.983042308 1 13.17982747 -4.79563774 5.346141892 1.000823822 1.098372982 0.769500159 0.022959946 0.068824385 4.942893532 0.00359923 0.011841384 1.60E-05 4.79563774 0.09754916 VDENMTASTYS(ph)LNKIPER ddPTM_HeLa_CUDC101_4h_R1 1 VDENMTASTYSLNKIPER 18 1 Q9HCD6;Q9HCD6-2;Q9HCD6-3;Q9HCD6-4;J3KRP9 Q9HCD6 TANC2 Protein TANC2 1 0 VDENMTAS(0.01)T(0.035)YS(0.954)LNKIPER 68.705 0.011402 9291300 1406.4 828.8 1308 875.04 1453.5 1424.3 2125.8 2017.3 1113.6 1379.3 TRUE FALSE FALSE 1241.543924 854.3343456 1378.714436 910.7279134 1346.278201 1397.133851 2207.792818 2246.941278 1067.696937 1371.095862 0.905512122 0.623103292 1.005556558 0.66423358 0.981899397 1.01899064 1.610239575 1.638792253 0.778717934 1 10.42111373 -4.79264085 3.612818468 0.914163664 1.647839429 0.828350304 0.136701989 0.063942565 1.721632596 0.018733715 0.070491382 1.61E-05 4.79264085 0.733675764 (ac)S(ph)LYPSLEDLKVDK ddPTM_HeLa_CUDC101_4h_R1 2 SLYPSLEDLKVDK 13 1 B4DHN5;E9PBU7;O00560-2;O00560 B4DHN5 SDCBP Syntenin-1 1 0 S(0.583)LY(0.417)PSLEDLKVDK;S(0.835)LY(0.164)PS(0.001)LEDLKVDK ; 113.69 0.00020764 8767200 3075.37 2863.05 2749.91 2641.37 4691.9 2235.05 726.24 390.71 2400.83 2182.27 TRUE FALSE FALSE 2714.879791 2951.257177 2898.578453 2749.096486 4345.787885 2192.420145 754.2513201 435.1868471 2301.866771 2169.289761 1.251506295 1.36047163 1.336187772 1.267279519 2.003322914 1.010662653 0.347695054 0.200612594 1.061115399 1 11.08300706 -4.792455994 3.938713683 1.22759612 0.244555647 0.695644759 0.269271295 0.09732609 3.204530774 0.040983768 0.14898197 1.61E-05 4.792455994 -0.983040473 S(ph)SGPTSLFAVTVAPPGAR ddPTM_HeLa_CUDC101_4h_R1 1 SSGPTSLFAVTVAPPGAR 18 0 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;A0A1X7SBS1;A0A1W2PP22 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 S(0.903)S(0.097)GPTSLFAVTVAPPGAR 191.51 7.81E-12 16921000 183.48 474.18 297.81 179.3 251.33 464.08 276.68 358.5 189.48 295.06 TRUE FALSE FALSE 161.9727525 488.7889238 313.9105094 186.612629 232.7898866 455.2284472 287.3516403 399.3101909 181.6695542 293.30497 0.552233235 1.666487014 1.07025295 0.636240937 0.79367863 1.552065235 0.979702595 1.361416381 0.619387916 1 8.196257707 -4.792071741 0.472485728 0.836513812 1.485408347 0.134345961 0.348106198 4.389526394 0.904296009 0.087219764 1.444552822 1.61E-05 4.792071741 0.648894535 VGDTEKPEPERS(ph)PPNR ddPTM_HeLa_CUDC101_4h_R1 5 VGDTEKPEPERSPPNR 16 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 0 VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR;VGDT(0.002)EKPEPERS(0.998)PPNR;VGDTEKPEPERS(1)PPNR;VGDTEKPEPERS(1)PPNR ;;;; 82.859 0.011222 3329472000 15365.1 12697.4 14358.1 13407.6 14806 14207.1 12540.7 12384.4 14631 14152.5 TRUE FALSE FALSE 13564.02627 13088.59184 15134.34232 13954.41988 13713.79088 13936.12324 13024.399 13794.19004 14027.90399 14068.3203 0.964153927 0.930359244 1.075774648 0.991903766 0.974799449 0.990603209 0.925796308 0.980514357 0.99712714 1 13.78016247 -4.791148944 24.96596349 0.986034447 0.95315529 0.132199975 0.036916738 289.0364309 242887.0168 0.00507062 0.015215079 1.62E-05 4.791148944 -0.032879157 SS(ph)FMSR ddPTM_HeLa_CUDC101_4h_R1 1 SSFMSR 6 0 Q16513-3;Q16513-2;Q16513;Q16513-4;B1AL79;Q16513-5;A0A3B3IUG4 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 S(0.225)S(0.775)FMSR 110.12 0.019147 14466000 3161.1 2276.6 2456.9 1979 2312.4 2567.1 3970.7 2536.1 1783.8 2460.7 TRUE FALSE FALSE 2790.56065 2346.739348 2589.727446 2059.712174 2141.818859 2518.136845 4123.851229 2824.799373 1710.271009 2446.063647 1.140837301 0.959394229 1.058732649 0.84205175 0.875618613 1.029464972 1.685913298 1.15483478 0.699193176 1 11.25624623 -4.790915132 24.45991164 1.027975879 1.420373868 0.483457537 0.180574865 77.71568515 64490.95648 0.02020493 0.060629669 1.62E-05 4.790915132 0.392397989 RRVS(ph)EVEEEKEPVPQPLPSDDTR ddPTM_HeLa_CUDC101_4h_R1 4 RRVSEVEEEKEPVPQPLPSDDTR 23 3 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 1 0 RRVS(1)EVEEEKEPVPQPLPSDDTR;RRVS(0.952)EVEEEKEPVPQPLPS(0.047)DDTR;RRVS(1)EVEEEKEPVPQPLPSDDTR;RRVS(1)EVEEEKEPVPQPLPSDDTR ;;; 77.357 0.0014861 282527400 7898.11 6585.09 7550.52 7561.45 8815.64 9414.98 10126.6 10343.2 7496.99 8526.66 TRUE FALSE FALSE 6972.305519 6787.968818 7958.72395 7869.838614 8165.3278 9235.404943 10517.18635 11520.62808 7187.960899 8475.943047 0.822599383 0.80085116 0.938977988 0.92849121 0.963353311 1.089602053 1.24082787 1.3592149 0.848042614 1 13.04915818 -4.790254891 1.144605476 0.905756366 1.407894969 0.895181892 0.056025542 0.239904802 0.437622863 0.011641101 0.114840285 1.62E-05 4.790254891 0.502138603 RADLNQGIGEPQS(ph)PSRR ddPTM_HeLa_CUDC101_4h_R1 2 RADLNQGIGEPQSPSRR 17 2 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 RADLNQGIGEPQS(0.959)PS(0.041)RR;RADLNQGIGEPQS(0.769)PS(0.231)RR ; 102.24 0.0021427 202787000 3909.23 3369.5 3962.2 3436.67 4325.3 3970.2 3376.8 2905.9 4074.5 3958.4 TRUE FALSE FALSE 3450.995985 3473.310301 4176.408517 3576.832257 4006.231236 3894.47505 3507.044307 3236.69591 3906.547385 3934.855261 0.87703251 0.882703447 1.061388092 0.909012408 1.018139416 0.989737815 0.891276572 0.822570513 0.992805866 1 11.94209485 -4.790029878 0.007355282 1.839667136 1.44E-06 0.105847891 0.069406581 22804.21524 31.74112126 3798.664698 4145.535321 1.62E-05 4.790029878 -1.839665693 SLSPGAASSSS(ph)GDGDGKEGLEEPK ddPTM_HeLa_CUDC101_4h_R1 1 SLSPGAASSSSGDGDGKEGLEEPK 24 1 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 S(0.014)LS(0.087)PGAAS(0.198)S(0.198)S(0.198)S(0.306)GDGDGKEGLEEPK 106.42 6.30E-07 39719000 10445 8362.6 8347.1 8317.3 8058.2 7110 6363.5 5652.8 9783.5 11464 TRUE FALSE FALSE 9220.652934 8620.241794 8798.369475 8656.515444 7463.76264 6974.388596 6608.942327 6296.291903 9380.219989 11395.81162 0.809126479 0.756439478 0.772070456 0.759622547 0.654956653 0.612013328 0.579944856 0.5525093 0.823128734 1 13.47621606 -4.789749928 0.109588785 1.223594385 7.51E-17 0.799544082 0.057461031 3.863776697 0.08464836 0.24037215 0.821767406 1.62E-05 4.789749928 -1.223594385 S(ph)PSDSGY(ph)S(ph)Y(ph)ET(ph)IGK ddPTM_HeLa_CUDC101_4h_R1 1 SPSDSGYSYETIGK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 5 0 S(0.835)PS(0.166)DS(0.456)GY(0.842)S(0.864)Y(0.842)ET(0.995)IGK 47.639 0.0032718 0 252.02 120.86 239.69 0 219.25 158.7 316.93 165.22 206.01 155.58 TRUE FALSE FALSE 222.4785976 124.5835533 252.6483664 0 203.0763643 155.6730619 329.1540963 184.027977 197.5181806 154.6546032 1.438551411 0.805559943 1.633629786 0 1.313096151 1.006585376 2.128317485 1.189928868 1.277156816 1 7.272905965 -4.788837793 24.9998507 1.123621823 1.659123971 0.194162806 0.474522802 232.6071769 212243.8777 0.062081537 0.186308104 1.63E-05 4.788837793 0.535502148 TT(ph)PDIIKDWPR ddPTM_HeLa_CUDC101_4h_R1 1 TTPDIIKDWPR 11 1 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 T(0.125)T(0.875)PDIIKDWPR 93.348 0.023688 5837300 5143.6 4353.1 4193.7 4542.9 4261.4 4087.9 3116.4 2662.6 4674 4305.5 TRUE FALSE FALSE 4540.675005 4487.213851 4420.424107 4728.179098 3947.045012 4009.930118 3236.600592 2965.699621 4481.335742 4279.890695 1.06093247 1.048441227 1.032835748 1.104742956 0.922230331 0.936923488 0.756234405 0.692938169 1.047067802 1 12.06335824 -4.788806917 1.21693784 1.034763071 0.652356752 0.906736657 0.039612164 0.151571428 0.32453092 0.006188851 0.057342301 1.63E-05 4.788806917 -0.382406319 TS(ph)PDPSPVSAAPSK ddPTM_HeLa_CUDC101_4h_R1 1 TSPDPSPVSAAPSK 14 0 Q13469-3;Q13469-4;Q13469-2;Q13469;Q13469-5 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 0 T(0.131)S(0.869)PDPSPVSAAPSK 189.99 2.36E-11 20245000 4587.5 4285.9 3751.8 3858 5164.6 4083.7 3352.6 3022 4408.3 4212.4 TRUE FALSE FALSE 4049.760204 4417.943499 3954.633657 4015.345916 4783.617747 4005.810226 3481.910905 3366.012265 4226.588008 4187.344457 0.967142838 1.055070473 0.944425207 0.958924196 1.142398911 0.956646932 0.831531998 0.803853683 1.009371942 1 12.03181989 -4.788698051 3.978953855 0.995315856 0.812095269 0.649303028 0.055254168 0.094857514 3.223948937 0.007505289 0.027321039 1.63E-05 4.788698051 -0.183220587 EGFGLSENPFAS(ph)LSPDEQKDEK ddPTM_HeLa_CUDC101_4h_R1 1 EGFGLSENPFASLSPDEQKDEK 22 1 B4DT96;C9JYA1;O15504-2;O15504 B4DT96 NUPL2 Nucleoporin-like protein 2 1 0 EGFGLSENPFAS(0.5)LS(0.5)PDEQKDEK 126.32 2.29E-07 21150000 914.39 821.14 736.81 696.59 753.99 685.77 581.59 527.52 1006 535.38 TRUE FALSE FALSE 807.2065903 846.4383501 776.6441773 724.9999511 698.3696599 672.6900798 604.0221211 587.5707445 964.5322542 532.1955359 1.516748142 1.590464957 1.459321104 1.362281158 1.312242611 1.263990459 1.134962773 1.104050494 1.812364421 1 9.055812599 -4.788014477 2.762489785 1.30531183 1.106811284 0.083451406 0.224368588 0.522714823 7.864613831 0.032877695 0.14284012 1.63E-05 4.788014477 -0.198500546 ASLSPDASDFEHITAET(ph)PSRPLS(ph)STSNPFK ddPTM_HeLa_CUDC101_4h_R1 1 ASLSPDASDFEHITAETPSRPLSSTSNPFK 30 1 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 2 0 ASLSPDASDFEHIT(0.04)AET(0.349)PS(0.271)RPLS(0.335)S(0.335)T(0.335)S(0.335)NPFK 55.171 0.001526 0 1394 935.96 750.46 991.37 1325.6 867.4 700.56 499.95 912.02 880.23 TRUE FALSE FALSE 1230.597433 964.7958182 791.0321376 1031.802354 1227.813129 850.8557902 727.5808339 556.8622871 874.4261496 874.9943528 1.406406143 1.102630909 0.904042563 1.1792103 1.403224061 0.972412893 0.83152632 0.63641815 0.999350621 1 9.773129896 -4.787920548 2.287959356 1.178139993 0.679417501 0.493862619 0.162544637 0.207518557 2.079362204 0.027155243 0.134637762 1.63E-05 4.787920548 -0.498722492 EVIEIEDAS(ph)PTKCPITTK ddPTM_HeLa_CUDC101_4h_R1 2 EVIEIEDASPTKCPITTK 18 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 EVIEIEDAS(0.985)PT(0.015)KCPITTK;EVIEIEDAS(0.988)PT(0.012)KCPITTK ; 90.758 0.0027886 550220000 11134.3 8565.3 9140.5 9229.5 9584.8 8833.8 7466.4 6786.4 9460.4 7875.2 TRUE FALSE FALSE 9829.154233 8829.186741 9634.663079 9605.918903 8877.7484 8665.309983 7754.381549 7558.936344 9070.438308 7828.35796 1.255583135 1.127846578 1.230738697 1.227066896 1.134049879 1.106912845 0.990550201 0.965583892 1.158664225 1 12.93449401 -4.787314982 2.712524342 1.140989082 0.966719457 0.50490671 0.070022546 0.270154009 3.909345793 0.014661496 0.064489653 1.63E-05 4.787314982 -0.174269625 GGSFWSSIPAS(ph)PASRPGSFTFPGDSDSLQR ddPTM_HeLa_CUDC101_4h_R1 3 GGSFWSSIPASPASRPGSFTFPGDSDSLQR 30 1 E7EPJ7;O75962-5;O75962-4;O75962 E7EPJ7 TRIO Triple functional domain protein 1 0 GGS(0.001)FWS(0.019)S(0.05)IPAS(0.805)PAS(0.089)RPGS(0.012)FT(0.014)FPGDS(0.007)DS(0.002)LQR;GGSFWS(0.001)S(0.005)IPAS(0.334)PAS(0.245)RPGS(0.271)FT(0.087)FPGDS(0.028)DS(0.028)LQR;GGSFWS(0.001)S(0.005)IPAS(0.979)PAS(0.015)RPGSFTFPGDSDSLQR ;; 93.179 9.63E-09 65907000 2403.27 2227.25 2164.77 2263.95 2925.92 2421.03 2883.17 2651.58 2048.37 2297.06 TRUE FALSE FALSE 2121.562334 2295.868933 2281.804014 2356.283667 2710.080711 2374.852886 2994.374833 2953.425149 1963.935322 2283.396985 0.929125486 1.005462015 0.999302368 1.031920285 1.186863576 1.040052563 1.31136848 1.293434812 0.860093683 1 11.15696599 -4.786987357 0.597427675 0.966251715 1.432243025 0.774690509 0.067458939 0.63948889 0.22361736 0.011010573 0.181240822 1.63E-05 4.786987357 0.46599131 ENSS(ph)PENKNWLLAMAAK ddPTM_HeLa_CUDC101_4h_R1 1 ENSSPENKNWLLAMAAK 17 1 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 ENS(0.254)S(0.746)PENKNWLLAMAAK 95.554 0.0026091 78934000 2967.5 2610.4 2437.2 2127.6 2981.1 2668.2 1889.5 2242.9 2558.5 2451.6 TRUE FALSE FALSE 2619.654148 2690.82333 2568.962404 2214.372724 2761.190192 2617.308531 1962.378648 2498.22267 2453.037547 2437.017774 1.07494257 1.10414596 1.054141841 0.908640367 1.133020129 1.073980074 0.805237725 1.025114669 1.006573515 1 11.25090106 -4.786386874 24.99991825 1.042333932 0.915176042 0.310187811 0.077049892 167.8930826 168245.9968 0.010149242 0.030465247 1.64E-05 4.786386874 -0.12715789 ASS(ph)LGEIDESSELR ddPTM_HeLa_CUDC101_4h_R1 1 ASSLGEIDESSELR 14 0 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 AS(0.243)S(0.757)LGEIDESSELR 344.54 1.57E-217 213320000 4126.4 4132.3 3600.8 3410.1 4497.6 4470.1 5124.5 5117.7 4004.3 4049.5 TRUE FALSE FALSE 3642.709647 4259.611265 3795.47014 3549.178618 4165.821008 4384.84029 5322.153682 5700.278282 3839.241059 4025.413394 0.904928088 1.058179831 0.942877108 0.881692952 1.034880297 1.089289437 1.322138414 1.416072767 0.953750754 1 11.97492123 -4.785921964 1.514990863 0.957887565 1.444509844 0.912987216 0.049486455 0.1084077 0.408618557 0.007987631 0.0587473 1.64E-05 4.785921964 0.486622279 KIS(ph)CLSFALDDLDDQADAAEAR ddPTM_HeLa_CUDC101_4h_R1 1 KISCLSFALDDLDDQADAAEAR 22 1 Q9Y247 Q9Y247 FAM50B Protein FAM50B 1 0 KIS(0.899)CLS(0.101)FALDDLDDQADAAEAR 69.548 0.0018766 3689200 1019.2 1035.8 727.22 875.9 774.39 873.35 1136.6 1020.8 698.81 732.14 TRUE FALSE FALSE 899.730921 1067.71177 766.5357129 911.622988 717.2647925 856.6923039 1180.439043 1137.003746 670.004756 727.7851987 1.236258889 1.467069916 1.053244438 1.252598967 0.985544627 1.177122461 1.621960772 1.562279293 0.920607835 1 9.507368901 -4.784163244 6.591372637 1.138914185 1.593904227 0.590336039 0.151890339 0.074575256 11.76416841 0.020995108 0.067495112 1.64E-05 4.784163244 0.454990043 SGS(ph)PRPTEPTDFLMLFEGS(ph)PSGK ddPTM_HeLa_CUDC101_4h_R1 1 SGSPRPTEPTDFLMLFEGSPSGK 23 1 Q9UPN4-3;Q9UPN4-2;I3L2J8;Q9UPN4 Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa 2 0 S(0.411)GS(0.569)PRPT(0.019)EPT(0.001)DFLMLFEGS(0.77)PS(0.23)GK 78.414 0.00094778 49751000 2101.9 1908.5 1770 1683.2 1975.6 1849.7 1574.2 1583.3 1823.1 1747.1 TRUE FALSE FALSE 1855.518468 1967.298623 1865.691554 1751.848171 1829.863924 1814.420054 1634.917421 1763.536472 1747.951046 1736.708172 1.068411204 1.132774438 1.074268887 1.008717642 1.053639267 1.044746656 0.941388685 1.015447789 1.00647367 1 10.76213964 -4.783209512 24.71266039 1.043629342 0.978418249 0.313335329 0.041044471 188.8703475 214399.1336 0.006386731 0.019185331 1.65E-05 4.783209512 -0.065211093 SES(ph)PVCSSR ddPTM_HeLa_CUDC101_4h_R1 1 SESPVCSSR 9 0 O00472;D6RC27 O00472 ELL2 RNA polymerase II elongation factor ELL2 1 0 SES(0.995)PVCS(0.005)SR 140.78 0.0017597 35085000 3017.3 1657.9 3203.4 3263.2 2732.1 2188.2 1895.1 1136.8 3355.9 3179.4 TRUE FALSE FALSE 2663.616668 1708.977934 3376.585494 3396.287401 2530.558426 2146.463731 1968.194642 1266.208717 3217.568382 3160.488787 0.842786305 0.540732162 1.068374458 1.074608274 0.800685779 0.679155623 0.622750079 0.400636991 1.018060369 1 11.62593198 -4.782632647 1.197168468 0.912266639 0.389808641 0.549277827 0.151512849 0.44135422 0.901222513 0.023730119 0.226561148 1.65E-05 4.782632647 -0.522457998 AMDT(ph)PKPAGGDEK ddPTM_HeLa_CUDC101_4h_R1 1 AMDTPKPAGGDEK 13 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AMDT(1)PKPAGGDEK 160.63 0.00096929 5928000 3547.9 3473.3 3638.8 3373.6 2630.4 3399 2437.4 551.45 2482.3 4756.1 TRUE FALSE FALSE 3132.02054 3580.308256 3835.524535 3511.18999 2436.360632 3334.169738 2531.411334 614.224839 2379.978543 4727.810506 0.662467444 0.757286751 0.811268669 0.742667242 0.515325356 0.70522491 0.535429948 0.129917398 0.503399732 1 12.2069565 -4.781427904 0.180413784 1.013593579 1.48E-32 0.285672548 0.187693359 7.452346219 0.294916801 0.281077705 1.799608879 1.65E-05 4.781427904 -1.013593579 RFS(ph)SSDFSDLSNGEELQETCSSSLR ddPTM_HeLa_CUDC101_4h_R1 2 RFSSSDFSDLSNGEELQETCSSSLR 25 1 P23497;P23497-2;P23497-3;P23497-4;E9PHV6;P23497-7;P23497-6;H7C4B4;H7C1G8 P23497 SP100 Nuclear autoantigen Sp-100 1 0 RFS(0.435)S(0.233)S(0.233)DFS(0.1)DLSNGEELQETCSSSLR;RFS(0.516)S(0.202)S(0.202)DFS(0.08)DLSNGEELQETCSSSLR ; 114.71 4.92E-08 48510000 3439.1 3098.8 3135.3 2669.85 3224.1 2759.89 2192.08 1900.7 3474 3156.3 TRUE FALSE FALSE 3035.973911 3194.270355 3304.803802 2778.738023 2986.264566 2707.249697 2276.62926 2117.068005 3330.80025 3137.526187 0.967633011 1.01808564 1.053315129 0.885646161 0.951789527 0.862861227 0.725612831 0.674757079 1.061600781 1 11.61541179 -4.780136966 0.970263219 0.989284661 0.610154338 0.876511616 0.044380525 0.215947031 0.253210954 0.005919889 0.070536891 1.66E-05 4.780136966 -0.379130323 VAS(ph)PSPSGSVLFTDEGVPK ddPTM_HeLa_CUDC101_4h_R1 1 VASPSPSGSVLFTDEGVPK 19 0 P56181-2 P56181-2 1 0 VAS(0.697)PS(0.297)PS(0.002)GS(0.004)VLFTDEGVPK 86.367 0.0017358 0 775.72 673.61 597.96 559.93 710.42 704.62 459.04 580.71 581.91 611.65 TRUE FALSE FALSE 684.7912775 694.3631257 630.2875263 582.7663656 658.013732 691.1805475 476.7453266 646.8156791 557.9234235 608.0118786 1.126279439 1.142022303 1.036636863 0.958478586 1.082238284 1.136787901 0.784105284 1.063820793 0.917619282 1 9.247955699 -4.779492886 24.99884827 1.063587457 0.923962893 0.206456655 0.095933941 190.8705295 264300.8941 0.011849647 0.035651707 1.66E-05 4.779492886 -0.139624563 STS(ph)PPPSPEVWADSR ddPTM_HeLa_CUDC101_4h_R1 1 STSPPPSPEVWADSR 15 0 E5RJ61;E5RGQ7;E5RJC0;E5RGQ0;E5RFK4;Q08495-3;Q08495-2;Q08495 E5RJ61 DMTN Dematin 1 0 ST(0.037)S(0.962)PPPS(0.001)PEVWADSR 119.77 0.00093847 8548100 1638.4 1465.6 1342.1 1161.1 1812.8 1513.9 1059.2 1225.6 1716.1 1487.3 TRUE FALSE FALSE 1446.349236 1510.753399 1414.657986 1208.454677 1679.073356 1485.02488 1100.053699 1365.11735 1645.361632 1478.453473 0.978285257 1.021847103 0.956849851 0.817377549 1.13569577 1.004444784 0.744057029 0.923341434 1.112893751 1 10.52987313 -4.779416645 24.99849422 0.988384836 0.833699221 0.3421816 0.092264274 156.5245452 217657.6984 0.010755588 0.032360088 1.66E-05 4.779416645 -0.154685615 ILEDHGS(ph)PAGEIDDEDKDKDETETVK ddPTM_HeLa_CUDC101_4h_R1 2 ILEDHGSPAGEIDDEDKDKDETETVK 26 2 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154;Q15154-4;Q15154-2;H0YBA1 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 ILEDHGS(1)PAGEIDDEDKDKDETETVK;ILEDHGS(0.998)PAGEIDDEDKDKDET(0.001)ET(0.001)VK ; 60.829 0.0016996 212380000 4748.7 4405.7 4281.6 4852.9 4532.9 4492.7 3601.7 3484.9 4772.7 4612.8 TRUE FALSE FALSE 4192.064585 4541.434395 4513.076247 5050.822238 4198.516998 4407.009233 3740.618775 3881.60693 4575.967286 4585.36286 0.914227448 0.99041985 0.984235356 1.101509824 0.915634624 0.961103705 0.815773776 0.846521213 0.997950964 1 12.16282019 -4.778772139 9.185837712 0.969815008 0.831055877 0.575176531 0.051236209 0.114329855 54.74936583 0.007722822 0.024181249 1.66E-05 4.778772139 -0.138759131 (ac)SDAAVDTS(ph)SEITTK ddPTM_HeLa_CUDC101_4h_R1 2 SDAAVDTSSEITTK 14 0 B8ZZQ6;P06454-2;P06454 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 1 0 SDAAVDT(0.316)S(0.514)S(0.168)EIT(0.001)T(0.001)K;SDAAVDT(0.303)S(0.489)S(0.159)EIT(0.017)T(0.032)K ; 87.363 0.00094323 36203000 8414.7 7933.3 7609 7351.2 8647.1 7895.1 8515.1 7270.5 8961.1 8126.1 TRUE FALSE FALSE 7428.341622 8177.71557 8020.365556 7651.013711 8009.22066 7744.514122 8843.530259 8098.144332 8591.719665 8077.765596 0.919603513 1.012373468 0.99289407 0.947169563 0.991514369 0.958744597 1.09479907 1.002522818 1.063625772 1 12.97974057 -4.778614295 24.99849243 0.967944689 1.04866095 0.156760196 0.045216046 148.9818017 216847.2619 0.005349792 0.016104445 1.66E-05 4.778614295 0.080716261 KLPVDSVFNKFEDEDS(ph)DDVPR ddPTM_HeLa_CUDC101_4h_R1 1 KLPVDSVFNKFEDEDSDDVPR 21 2 P49756 P49756 RBM25 RNA-binding protein 25 1 0 KLPVDS(0.052)VFNKFEDEDS(0.948)DDVPR 41.485 0.03943 21692000 922.11 927.46 940.09 1081.4 973.97 1066 1071.8 1017.3 992.38 1254.2 TRUE FALSE FALSE 814.0216636 956.0339433 990.914109 1125.504166 902.1221735 1045.667826 1113.139685 1133.10532 951.4736764 1246.739963 0.652920166 0.766827063 0.79480416 0.902757752 0.72358487 0.838721672 0.892840302 0.908854576 0.763169309 1 10.28394487 -4.778446394 4.117404815 0.821417611 0.903544611 0.132901446 0.091476801 0.512344299 19.33301302 0.018661371 0.068128867 1.67E-05 4.778446394 0.082127 KAEAGAGS(ph)ATEFQFR ddPTM_HeLa_CUDC101_4h_R1 1 KAEAGAGSATEFQFR 15 1 P46783;Q9NQ39 P46783 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 1 0 KAEAGAGS(0.96)AT(0.04)EFQFR 91.592 0.020717 10130000 910.27 752.26 744.11 906.35 797.06 653.94 506.29 368.99 744.5 680.95 TRUE FALSE FALSE 803.5695305 775.436239 784.3388374 943.3148706 738.2624718 641.467184 525.8177749 410.9943301 713.8113949 676.8996791 1.187132385 1.145570404 1.158722425 1.393581501 1.090652713 0.947654732 0.776803109 0.607171702 1.054530556 1 9.402798223 -4.778029655 1.761229487 1.123129352 0.616678384 0.765616901 0.101699792 0.184773112 1.008045496 0.0175274 0.111927404 1.67E-05 4.778029655 -0.506450967 VASET(ph)HSEGSEYEELPK ddPTM_HeLa_CUDC101_4h_R1 1 VASETHSEGSEYEELPK 17 0 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 VAS(0.084)ET(0.857)HS(0.059)EGSEYEELPK 149 0.00062723 8000700 2405 2454.4 2227.3 2413.1 2411.2 2443.1 1919.8 2043.5 2789.2 2524.4 TRUE FALSE FALSE 2123.089546 2530.017155 2347.714575 2511.516648 2233.33058 2396.501938 1993.847329 2276.12378 2674.227995 2509.384757 0.846059792 1.008222094 0.935573777 1.000849568 0.889991291 0.955015739 0.794556245 0.907044555 1.065690699 1 11.29311798 -4.77780107 24.99760763 0.93629769 0.850800379 0.234863769 0.068633427 244.6053128 373712.7241 0.009314281 0.028059214 1.67E-05 4.77780107 -0.085497311 LIPGPLS(ph)PVAR ddPTM_HeLa_CUDC101_4h_R1 4 LIPGPLSPVAR 11 0 P48634;P48634-2;P48634-3 P48634 PRRC2A Protein PRRC2A 1 0 LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR ;;; 150.09 0.00066875 802845000 17063.7 17194.7 15132 15120.2 17048.9 15911.7 15664.2 14070.5 15648.8 16382.7 TRUE FALSE FALSE 15063.51895 17724.44833 15950.08169 15736.86711 15791.23661 15608.21083 16268.37344 15672.22885 15003.74984 16285.25497 0.924979006 1.088374014 0.979418604 0.966326111 0.969664684 0.958425942 0.998963386 0.962356983 0.921308869 1 13.99127869 -4.776889203 24.88578809 0.973929175 0.980660212 0 0.044675291 2026.119833 3263580.301 0.006379817 0.019232965 1.67E-05 4.776889203 0.006731038 DVVLS(ph)TSPK ddPTM_HeLa_CUDC101_4h_R1 1 DVVLSTSPK 9 0 Q9P275;A0A075B784 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36;Ubiquitin carboxyl-terminal hydrolase 1 0 DVVLS(0.378)T(0.245)S(0.378)PK 86.189 0.034047 45047000 12951 11415 10210 10710 10127 10416 9423.1 7574.5 11779 10995 TRUE FALSE FALSE 11432.90341 11766.68262 10761.98348 11146.80009 9379.951386 10217.33215 9786.552124 8436.750463 11293.46463 10929.60125 1.046049453 1.076588464 0.984663872 1.019872531 0.858215334 0.934831191 0.895417124 0.771917499 1.033291552 1 13.41595315 -4.776635833 0.61777273 1.026799334 0.735306602 0.763479208 0.044215804 0.768972615 0.289118788 0.008467842 0.140125742 1.67E-05 4.776635833 -0.291492733 AGKS(ph)GT(ph)STPTT(ph)PGSTAITPGTPPSYSSR ddPTM_HeLa_CUDC101_4h_R1 1 AGKSGTSTPTTPGSTAITPGTPPSYSSR 28 1 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77 MAP2 Microtubule-associated protein 2 3 0 AGKS(0.711)GT(0.431)S(0.421)T(0.422)PT(0.082)T(0.4)PGS(0.157)T(0.142)AIT(0.153)PGT(0.069)PPS(0.011)YS(0.002)S(0.002)R 53.563 0.0079107 45836000 1215.7 1163.7 1025.8 1267.1 1125.6 1163.7 1545.8 1216.9 1145.2 1146.3 TRUE FALSE FALSE 1073.197489 1199.552218 1081.257851 1318.777815 1042.566731 1141.504361 1605.422024 1355.426977 1097.994371 1139.481757 0.941829461 1.052717352 0.94890317 1.157348775 0.914948155 1.001775022 1.408905421 1.189511784 0.963591005 1 10.15416211 -4.776358939 24.6159615 0.986677195 1.299208532 0.683035379 0.081901495 61.57252245 101589.898 0.010418489 0.031448121 1.67E-05 4.776358939 0.312531337 KGS(ph)GS(ph)ERLPPS(ph)GLLAK ddPTM_HeLa_CUDC101_4h_R1 1 KGSGSERLPPSGLLAK 16 2 Q9P1Z3 Q9P1Z3 HCN3 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 3 0 KGS(1)GS(1)ERLPPS(1)GLLAK 84.859 0.0018957 0 964.26 641.84 641.14 816.07 910.17 804.63 910.58 753.11 915.25 831.38 TRUE FALSE FALSE 851.2309045 661.6143296 675.8019677 849.352862 843.0285724 789.2830234 945.7013756 838.8409982 877.5230076 826.4349148 1.03000356 0.800564349 0.817731627 1.027731097 1.020078602 0.955045593 1.144314402 1.015011567 1.061817443 1 9.690757395 -4.775223838 24.99873621 0.983386132 1.079663006 0.183298084 0.090521558 299.369761 542923.5565 0.013226105 0.039974279 1.68E-05 4.775223838 0.096276874 AS(ph)PATPAGHPVSGLLLR ddPTM_HeLa_CUDC101_4h_R1 2 ASPATPAGHPVSGLLLR 17 0 A0A3B3IRR3;Q9HCM7 A0A3B3IRR3 FBRSL1 Fibrosin-1-like protein 1 0 AS(0.998)PAT(0.002)PAGHPVSGLLLR;AS(0.995)PAT(0.005)PAGHPVSGLLLR ; 122.96 0.0002966 31397000 715.56 833.28 598.05 632.86 804.19 608.9 813.22 563.68 788.67 728.37 TRUE FALSE FALSE 631.6831415 858.9523691 630.382392 658.6707663 744.8665059 597.286247 844.5861678 627.8470527 756.1606888 724.0376228 0.87244519 1.186336652 0.870648668 0.909718978 1.028767681 0.824938136 1.166494863 0.867147 1.04436657 1 9.499920855 -4.775130554 24.99995332 0.949298515 1.016821057 0.009347448 0.121671648 495.0016684 903873.295 0.015380475 0.046482541 1.68E-05 4.775130554 0.067522543 S(ph)PEPEVLSTQEDLFDQSNK ddPTM_HeLa_CUDC101_4h_R1 3 SPEPEVLSTQEDLFDQSNK 19 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(1)PEPEVLSTQEDLFDQSNK;S(1)PEPEVLSTQEDLFDQSNK;S(1)PEPEVLSTQEDLFDQSNK ;; 271.43 1.13E-86 38872400 17398.7 12987.1 12931.3 12459.4 12304.9 12562.4 11089.7 4399.2 14386.9 13666 TRUE FALSE FALSE 15359.25076 13387.21716 13630.40519 12967.54819 11397.19204 12322.79315 11517.43344 4899.987146 13793.86589 13584.71402 1.130627464 0.985461831 1.003363425 0.954569096 0.838971805 0.907107292 0.847823033 0.360698586 1.015396119 1 13.72969657 -4.080159629 0.721788065 1.04663731 4.22E-32 0.823798164 0.083386358 1.09132036 0.335056046 0.015082069 0.98340521 8.31E-05 4.080159629 -1.04663731 down QAS(ph)TDAGTAGALT(ph)PQHVR ddPTM_HeLa_CUDC101_4h_R1 1 QASTDAGTAGALTPQHVR 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 2 0 QAS(0.713)T(0.287)DAGT(0.184)AGALT(0.816)PQHVR 143.33 0.00033605 4182000 1459.8 1346.8 1238.2 1074.4 1352.6 1450.3 1405 1364.7 1650.2 1529.9 TRUE FALSE FALSE 1288.684457 1388.293312 1305.140837 1118.218676 1252.821393 1422.637944 1459.191321 1520.051932 1582.178058 1520.800087 0.847372688 0.912870353 0.858193558 0.735283148 0.823790979 0.935453618 0.959489241 0.999508052 1.040359 1 10.5706148 -4.77463955 2.808705134 0.898766996 0.987423012 0.158186936 0.082452579 0.450442569 7.015420842 0.012748784 0.055850634 1.68E-05 4.77463955 0.088656016 ASITPVLGSPS(ph)TK ddPTM_HeLa_CUDC101_4h_R1 1 ASITPVLGSPSTK 13 0 Q9NYF5-3;Q9NYF5-2;Q9NYF5 Q9NYF5-3 FAM13B Protein FAM13B 1 0 ASITPVLGS(0.311)PS(0.563)T(0.125)K 102.5 0.0079809 13411000 1057.3 984.74 866.13 1138.6 972.12 1148.1 1108.6 1099.8 941.22 1215.9 TRUE FALSE FALSE 933.3648968 1015.078672 912.9556077 1185.037029 900.4086443 1126.201905 1151.359073 1224.996786 902.4225132 1208.667773 0.77222618 0.839832661 0.755340407 0.980448934 0.744959587 0.93177127 0.952585234 1.013509927 0.746625776 1 10.23920203 -4.774513665 2.591974598 0.873231368 0.996048245 0.236894164 0.093541789 0.407799083 5.344125145 0.014811142 0.068355097 1.68E-05 4.774513665 0.122816877 TRLS(ph)TASEETVQNR ddPTM_HeLa_CUDC101_4h_R1 1 TRLSTASEETVQNR 14 1 H7C3R4;O43379-3;O43379-2;O43379;O43379-4 H7C3R4 WDR62 WD repeat-containing protein 62 1 0 T(0.143)RLS(0.841)T(0.016)AS(0.001)EETVQNR 179.79 2.38E-07 7052400 1951.8 1354.6 1607.8 1500.9 1815.5 1688.3 2100.7 1941.3 1384.8 1562.3 TRUE FALSE FALSE 1723.012963 1396.33362 1694.722531 1562.113189 1681.574182 1656.09849 2181.724703 2162.289745 1327.717958 1553.00737 1.109468632 0.899115901 1.091252085 1.005863346 1.082785706 1.066381604 1.404838602 1.392324201 0.854933456 1 10.60084896 -4.774195974 6.048437606 1.043797431 1.401624687 0.770834824 0.082691298 0.037939868 4.99735883 0.008468977 0.028243808 1.68E-05 4.774195974 0.357827255 RSS(ph)QPSPT(ph)AVPASDS(ph)PPTKQEVK ddPTM_HeLa_CUDC101_4h_R1 2 RSSQPSPTAVPASDSPPTKQEVK 23 2 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 3 0 RS(0.336)S(0.402)QPS(0.395)PT(0.866)AVPAS(0.177)DS(0.803)PPT(0.021)KQEVK;RS(0.123)S(0.876)QPS(0.018)PT(0.982)AVPAS(0.103)DS(0.894)PPT(0.003)KQEVK ; 121.24 2.91E-07 40219000 5065.6 5175.9 5275.9 4669.3 4922.3 5371.7 5643.8 5549.3 5233.3 5293.8 TRUE FALSE FALSE 4471.818047 5335.363344 5561.131113 4859.734236 4559.191736 5269.243772 5861.483257 6181.009881 5017.581159 5262.312242 0.849781967 1.01388194 1.056784709 0.923497887 0.866385635 1.001317202 1.113860787 1.174580602 0.953493622 1 12.36148114 -4.774017677 2.655170706 0.939642021 1.162727597 0.603764347 0.061379169 0.158550752 2.188165878 0.010704876 0.048644822 1.68E-05 4.774017677 0.223085576 ETSNNVPAIMS(ph)S(ph)LWK ddPTM_HeLa_CUDC101_4h_R1 1 ETSNNVPAIMSSLWK 15 0 Q14207 Q14207 NPAT Protein NPAT 2 0 ETSNNVPAIMS(1)S(1)LWK 65.232 0.0033148 0 661.72 617.3 653.76 546.29 612.53 562.88 363.62 408.64 561.09 484.68 TRUE FALSE FALSE 584.1541847 636.3182813 689.1042431 568.5700675 567.3448822 552.1440018 377.6449452 455.1579258 537.9616327 481.7971018 1.212448523 1.320718367 1.43027893 1.180102714 1.177559766 1.146009388 0.783825689 0.944708725 1.116572995 1 8.912281905 -4.772898249 24.15663638 1.155298979 0.86426724 0.528427361 0.120830401 98.99069254 208686.7354 0.021126523 0.064245265 1.69E-05 4.772898249 -0.291031739 DISFLY(ph)DVT(ph)YAK ddPTM_HeLa_CUDC101_4h_R1 1 DISFLYDVTYAK 12 0 A6H900;Q5T1B0;D6RDY4;D6REE1;B1AM31 A6H900 C1orf125;AXDND1 Axonemal dynein light chain domain-containing protein 1 2 0 DISFLY(0.999)DVT(1)Y(0.001)AK 115.92 0.00016925 0 1603.3 1391 1153 1176.7 1728.6 1410.6 1123.7 1156.7 1126.9 1324.5 TRUE FALSE FALSE 1415.363604 1433.855061 1215.334668 1224.690912 1601.084622 1383.695155 1167.041485 1288.374052 1080.448705 1316.621815 1.074996319 1.089040942 0.923070432 0.930176683 1.216055061 1.050943513 0.886390816 0.978545272 0.820621907 1 10.36262529 -4.772768813 24.99236199 1.038145305 0.932468042 0.045290306 0.106621393 221.2291846 488028.4474 0.011472987 0.034865051 1.69E-05 4.772768813 -0.105677263 QRS(ph)PS(ph)PAPAPAPAAAAGPPTR ddPTM_HeLa_CUDC101_4h_R1 1 QRSPSPAPAPAPAAAAGPPTR 21 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 0 QRS(1)PS(1)PAPAPAPAAAAGPPTR 76.439 0.0030881 79417000 994.26 1023.5 1093.9 1052.6 1019.1 1045.6 1229 1032.2 1065.6 1165.8 TRUE FALSE FALSE 877.71435 1055.032822 1153.039543 1095.529578 943.9230233 1025.656922 1276.402942 1149.701476 1021.675517 1158.86577 0.757390867 0.91040123 0.994972475 0.945346395 0.814523173 0.885052392 1.101424319 0.992092014 0.881616787 1 10.17849775 -4.772624787 24.76862164 0.891949378 1.046758163 0.384007942 0.0746407 164.7776169 364881.9225 0.014044281 0.042713637 1.69E-05 4.772624787 0.154808785 S(ph)VSSSPWLPQDGFDPSDYAEPMDAVVKPR ddPTM_HeLa_CUDC101_4h_R1 2 SVSSSPWLPQDGFDPSDYAEPMDAVVKPR 29 1 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 0 S(0.715)VS(0.192)S(0.046)S(0.046)PWLPQDGFDPSDYAEPMDAVVKPR;S(0.415)VS(0.149)S(0.218)S(0.218)PWLPQDGFDPSDYAEPMDAVVKPR ; 99.269 3.80E-09 20490800 936.69 842.79 688.67 786.23 1117.24 1135.75 1216.75 1295.71 1024.52 1092.66 TRUE FALSE FALSE 826.8926181 868.7553609 725.9015833 818.2958578 1034.823431 1114.087461 1263.680455 1443.208389 982.288852 1086.16081 0.761298521 0.799840459 0.668318703 0.753383708 0.952735011 1.025711341 1.163437719 1.328724417 0.904367791 1 10.085022 -4.772179983 1.339688694 0.852739927 1.345052848 0.766813132 0.093318201 0.3109279 0.846472688 0.018667814 0.161172579 1.69E-05 4.772179983 0.492312922 S(ph)PIINESR ddPTM_HeLa_CUDC101_4h_R1 3 SPIINESR 8 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 S(1)PIINESR;S(1)PIINESR;S(1)PIINESR ;; 131.12 0.0053918 76829000 1655.8 1472.53 1342.89 1826.09 1216.29 1422.89 1652.95 1321.75 1483.93 1527.14 TRUE FALSE FALSE 1461.709634 1517.896904 1415.490695 1900.565843 1126.56671 1395.750744 1716.704835 1472.212677 1422.761777 1518.056503 0.962882232 0.999894866 0.932436106 1.251973058 0.742111185 0.91943267 1.130857008 0.969800975 0.937225837 1 10.56800977 -4.772147046 25 0.978497131 1.050329019 0.061335209 0.123334729 438.2626735 1023253.435 0.015744489 0.047914691 1.69E-05 4.772147046 0.071831888 SSVS(ph)SVGAR ddPTM_HeLa_CUDC101_4h_R1 1 SSVSSVGAR 9 0 Q9BZ67-2;Q9BZ67-3;Q9BZ67;Q8N4M4;E9PRA3;E9PRP1;E9PS62;Q9BZ68 Q9BZ67-2 FRMD8;FRMD8P1 FERM domain-containing protein 8;Putative FERM domain-containing protein FRMD8P1 1 0 SSVS(0.5)S(0.5)VGAR 117.01 0.0067449 12127000 2354.8 1572.7 2190.9 1758.8 1592.9 1830.2 2484 1835.2 1348.4 2004.4 TRUE FALSE FALSE 2078.773914 1621.153023 2309.346681 1830.531466 1475.394941 1795.291984 2579.808712 2044.11175 1292.818381 1992.47774 1.043310985 0.813636705 1.159032613 0.918721163 0.740482521 0.901034902 1.29477417 1.025914473 0.648849598 1 10.96034789 -4.772136014 24.99996801 0.982324901 1.160344356 0.16577595 0.167392623 203.6480537 475966.4129 0.018170836 0.055311309 1.69E-05 4.772136014 0.178019455 NASLSQS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 NASLSQSPR 9 0 C9J1X0;A4D1P6-3;A4D1P6-2;A4D1P6 C9J1X0 WDR91 WD repeat-containing protein 91 1 0 NASLSQS(1)PR 122.55 0.0050847 63234000 5998 4603.4 4927.9 5052.2 5065 4596.2 4228.6 3548 5286.4 4556.9 TRUE FALSE FALSE 5294.923532 4745.225298 5194.31718 5258.250553 4691.365041 4508.535143 4391.698518 3951.889978 5068.492354 4529.795356 1.168910098 1.047558427 1.146700187 1.160814152 1.035668208 0.995306584 0.96951367 0.872421306 1.118923032 1 12.14523016 -4.771993792 1.232581701 1.088679533 0.870156324 0.656019245 0.053820856 0.467625812 1.023190363 0.010855727 0.102628609 1.69E-05 4.771993792 -0.218523209 YSEEGLS(ph)PSKR ddPTM_HeLa_CUDC101_4h_R1 1 YSEEGLSPSKR 11 1 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 YSEEGLS(0.863)PS(0.136)KR 79.283 0.003311 0 2805.8 2169.9 2233.3 2180.7 2725.2 2458.3 2110.7 2090.6 2686.2 2318.7 TRUE FALSE FALSE 2476.908377 2236.752047 2354.038953 2269.638372 2524.167425 2411.412023 2192.110406 2328.585454 2575.473699 2304.908269 1.074623407 0.970429963 1.021315679 0.984697917 1.095127064 1.046207372 0.951061886 1.010272506 1.117386637 1 11.17049362 -4.771971872 24.99126142 1.031573679 0.980667191 0.182927441 0.04718187 227.3597123 539479.0722 0.005886496 0.017926392 1.69E-05 4.771971872 -0.050906488 GLNGGITPLNSIS(ph)PLKK ddPTM_HeLa_CUDC101_4h_R1 1 GLNGGITPLNSISPLKK 17 1 E5RJM0;B7ZLQ8;Q17RY0-2;Q17RY0;H0YBG1 E5RJM0 CPEB4 Cytoplasmic polyadenylation element-binding protein 4 1 0 GLNGGITPLNS(0.001)IS(0.999)PLKK 95.48 0.0024893 18250000 1275.1 1043.7 1177.6 1310 1486.1 1216.5 921.67 972.41 1379.2 1147.8 TRUE FALSE FALSE 1125.634711 1075.85516 1241.264618 1363.427462 1376.473364 1193.297289 957.2191206 1083.105224 1322.348792 1140.972835 0.986556977 0.942927936 1.087900238 1.194969259 1.206403275 1.04585951 0.838949966 0.949282219 1.158966061 1 10.15604873 -4.771662253 24.81516352 1.029007275 0.894116089 0.26708686 0.097874466 188.9314769 458620.1559 0.01430071 0.043611716 1.69E-05 4.771662253 -0.134891186 AHS(ph)SPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR ddPTM_HeLa_CUDC101_4h_R1 1 AHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR 37 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 AHS(0.666)S(0.232)PAS(0.101)LQLGAVS(0.001)PGTLTPTGVVSGPAATPTAQHLR 66.916 3.14E-05 16723000 1173.2 955.56 766.95 1021.9 1274.6 1145 1372.9 1312.2 1152.1 1147.9 TRUE FALSE FALSE 1035.679274 984.999671 808.4136369 1063.577499 1180.575297 1123.161033 1425.853213 1461.575544 1104.60995 1141.07224 0.907636904 0.863222885 0.708468411 0.932086035 1.034619243 0.984303179 1.249573132 1.280879065 0.968045591 1 10.15617441 -4.771581357 1.602463708 0.929554536 1.317464824 0.718583736 0.085535337 0.223653737 0.96318697 0.01403474 0.100025513 1.69E-05 4.771581357 0.387910287 AS(ph)NTSTPTKGNTETSASASQTNHVK ddPTM_HeLa_CUDC101_4h_R1 1 ASNTSTPTKGNTETSASASQTNHVK 25 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 AS(0.185)NT(0.185)S(0.158)T(0.136)PT(0.136)KGNT(0.158)ET(0.02)S(0.02)ASASQTNHVK 57.945 0.0031575 10128000 896.85 474.83 359.66 395.21 753.98 613.24 856.86 683.79 722.01 520.21 TRUE FALSE FALSE 791.7226025 489.4589495 379.1043075 411.328372 698.3603975 601.5434687 889.9093772 761.6298896 692.2484422 517.1157678 1.531035509 0.946517163 0.73311303 0.795428021 1.350491401 1.163266538 1.720909384 1.472842131 1.338672083 1 9.014343486 -4.771504038 24.81480874 1.166975631 1.596875739 0.360679276 0.250847962 175.0285857 431544.4806 0.042567078 0.129909929 1.69E-05 4.771504038 0.429900108 RQEELENGTAWSLSSESSDDSS(ph)SPQLSGTAR ddPTM_HeLa_CUDC101_4h_R1 1 RQEELENGTAWSLSSESSDDSSSPQLSGTAR 31 1 A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4;H3BMG9;H3BSV5 A0A0A0MTL6 FAM65A Protein FAM65A 1 0 RQEELENGTAWSLS(0.001)S(0.006)ES(0.063)S(0.063)DDS(0.267)S(0.295)S(0.295)PQLS(0.007)GT(0.003)AR 70.666 1.67E-05 6975600 971.45 853.11 685.49 597.28 904.73 678.25 1099.6 703.1 937.71 806.71 TRUE FALSE FALSE 857.5781036 879.3933079 722.5496629 621.6396601 837.9898704 665.3135113 1142.01194 783.138062 899.0571969 801.911653 1.069417186 1.096621186 0.901033998 0.77519719 1.044990264 0.829659363 1.424111916 0.976588953 1.121142452 1 9.647299493 -4.770908302 24.99994383 1.000176049 1.200350485 0.252687854 0.148457527 178.3424014 470866.3288 0.019016967 0.058153571 1.69E-05 4.770908302 0.200174436 MEES(ph)FSSKY(ph)VPK ddPTM_HeLa_CUDC101_4h_R1 1 MEESFSSKYVPK 12 1 P42167;G5E972;H0YJH7;P42167-2 P42167 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 2 0 MEES(0.338)FS(0.338)S(0.338)KY(0.985)VPK 107.15 0.035834 12135000 1011.6 720.17 716.93 756.81 803.9 821.86 645.84 679.5 829.61 690.84 TRUE FALSE FALSE 893.0217815 742.3575841 755.6894044 787.675983 744.5978986 806.1843898 670.7502651 756.8515334 795.4131247 686.730853 1.300395603 1.081002231 1.100415689 1.146993731 1.08426452 1.173945202 0.976729475 1.102107951 1.15826036 1 9.423600971 -4.770356727 24.9994016 1.135351092 1.039418703 0.174095824 0.078964246 296.9996441 832635.0744 0.015736867 0.048238783 1.70E-05 4.770356727 -0.095932389 VLLQASQDENFGNT(ph)TPR ddPTM_HeLa_CUDC101_4h_R1 1 VLLQASQDENFGNTTPR 17 0 G3V1T4;P57740 G3V1T4 NUP107 Nuclear pore complex protein Nup107 1 0 VLLQAS(0.115)QDENFGNT(0.513)T(0.372)PR 91.657 0.029803 43821000 3335 3009.5 2716.8 2651.9 3042.8 3040.5 3244.3 2868.8 2779.5 3166.6 TRUE FALSE FALSE 2944.076356 3102.219128 2863.678426 2760.055944 2818.338706 2982.507528 3369.433738 3195.372596 2664.927834 3147.764922 0.935291049 0.985530751 0.909749774 0.87683039 0.895345992 0.947500084 1.07042102 1.015124279 0.846609547 1 11.62011209 -4.770305149 24.99873326 0.952635115 1.042772652 0.370415622 0.05224039 136.621854 385235.6459 0.006819259 0.020916512 1.70E-05 4.770305149 0.090137536 S(ph)SPGSVAASPSGGGGR ddPTM_HeLa_CUDC101_4h_R1 2 SSPGSVAASPSGGGGR 16 0 Q9BXB5-2;Q9BXB5 Q9BXB5-2 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 S(0.852)S(0.148)PGSVAASPSGGGGR;S(0.972)S(0.028)PGSVAASPSGGGGR ; 194.67 3.61E-16 117739000 3443.6 2751.8 3787.4 3572.2 3844.6 3647.9 4153.7 3536.5 4014.8 4359.1 TRUE FALSE FALSE 3039.946428 2836.579696 3992.1583 3717.889756 3560.991518 3578.322385 4313.9096 3939.080865 3849.308245 4333.171879 0.701552238 0.654619705 0.921301626 0.858006527 0.821797892 0.825797472 0.995554693 0.909052531 0.888335001 1 12.08120775 -4.770257409 24.96006132 0.841575632 0.952303617 0.191220755 0.096359448 288.2125591 815815.9064 0.018037201 0.055304388 1.70E-05 4.770257409 0.110727985 DSGNWDTSGS(ph)ELSEGELEKR ddPTM_HeLa_CUDC101_4h_R1 1 DSGNWDTSGSELSEGELEKR 20 1 O75400-2;O75400-3;O75400 O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 0 DSGNWDT(0.001)S(0.045)GS(0.757)ELS(0.197)EGELEKR 80.477 0.0019061 35973000 517.82 442.69 514.52 275.23 527.14 528.82 195.12 379.81 656.75 411.33 TRUE FALSE FALSE 457.1219246 456.3287542 542.3365075 286.455069 488.2539324 518.7336396 202.6458438 423.0460352 629.678487 408.8833909 1.117976261 1.116036416 1.326384294 0.700578882 1.194115348 1.268659112 0.495607912 1.034637368 1.539995268 1 8.675545651 -4.770245436 24.99999898 1.076393024 0.765122595 0.236902383 0.249779322 149.1669271 423483.028 0.025725817 0.078887465 1.70E-05 4.770245436 -0.311270429 YS(ph)PPRDDDKVDNQAK ddPTM_HeLa_CUDC101_4h_R1 1 YSPPRDDDKVDNQAK 15 2 Q14669;Q14669-2;Q14669-3;Q14669-4 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 Y(0.147)S(0.853)PPRDDDKVDNQAK 70.837 0.031527 137080000 3745.8 3349.2 3535.4 3448.6 3764.1 3556.5 3008.5 2928.9 3629.1 3583.1 TRUE FALSE FALSE 3306.723002 3452.384882 3726.534418 3589.248814 3486.429842 3488.665688 3124.538853 3262.314137 3479.506962 3561.787562 0.92838861 0.969284333 1.046253982 1.007709964 0.978842725 0.979470456 0.87723897 0.91592047 0.976899071 1 11.79838576 -4.768488305 24.99999982 0.976031618 0.896579714 0.555324897 0.030972853 107.1531686 380039.7176 0.005446949 0.016866087 1.70E-05 4.768488305 -0.079451904 AAS(ph)SSSPGS(ph)PVASSPSR ddPTM_HeLa_CUDC101_4h_R1 1 AASSSSPGSPVASSPSR 17 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 2 0 AAS(0.639)S(0.3)S(0.06)S(0.346)PGS(0.65)PVAS(0.006)SPSR 166.67 8.99E-05 28952000 2153 1923.3 1707.6 1913.7 2064.6 2408.1 2451.8 2593.7 1843.5 1869.3 TRUE FALSE FALSE 1900.628604 1982.554593 1799.918021 1991.748958 1912.298571 2362.169505 2546.366747 2888.956324 1767.51015 1858.18132 1.022843456 1.066932797 0.968644987 1.071880842 1.029123773 1.271226591 1.370354292 1.554722509 0.951204347 1 10.85967557 -4.768476102 1.104324174 1.012468694 1.607985785 0.951612943 0.041853223 0.097977749 0.160041303 0.005129969 0.054895378 1.70E-05 4.768476102 0.595517091 ERLDGENIY(ph)IR ddPTM_HeLa_CUDC101_4h_R1 1 ERLDGENIYIR 11 1 P11171;A0A2R8Y5G2;P11171-7;P11171-2;A0A2R8Y5Z6;A0A2R8YCW8;A0A2R8YD30;Q4VB86;A0A2R8Y420;P11171-3;P11171-4;A0A2R8Y5C8 P11171 EPB41 Protein 4.1 1 0 ERLDGENIY(1)IR 129.88 0.00011932 0 990.29 891.27 732.28 863.31 1256.2 887.39 477.12 543.53 1014.6 837 TRUE FALSE FALSE 874.2097074 918.7289723 771.8692718 898.5195133 1163.532629 870.4645142 495.5226782 605.4032582 972.7777586 832.0214868 1.050705686 1.104213036 0.927703532 1.079923449 1.398440602 1.046204369 0.595564761 0.727629355 1.169173842 1 9.700476976 -4.768223649 24.71303354 1.055222135 0.661597023 0.641213186 0.127250512 59.03290683 215043.1911 0.017576383 0.054524713 1.71E-05 4.768223649 -0.393625112 EQEAEPEEQEEDS(ph)SSDPR ddPTM_HeLa_CUDC101_4h_R1 1 EQEAEPEEQEEDSSSDPR 18 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 0 EQEAEPEEQEEDS(0.605)S(0.198)S(0.198)DPR 122.13 5.69E-05 0 284.67 308.1 261.16 160.89 281.54 229.81 474.7 339.89 173.53 248.14 TRUE FALSE FALSE 251.3014141 317.5921958 275.2790996 167.4517896 260.7713551 225.4267571 493.009338 378.5817037 166.37702 246.6640522 1.018800315 1.287549576 1.116008178 0.678865802 1.057192375 0.913901945 1.99870769 1.534806958 0.674508581 1 7.946403669 -4.767690147 24.99995276 1.011403097 1.766757386 0.700041498 0.207525514 44.17240138 176670.8395 0.023181133 0.072133009 1.71E-05 4.767690147 0.755354288 SYS(ph)SPDITQAIQEEEK ddPTM_HeLa_CUDC101_4h_R1 1 SYSSPDITQAIQEEEK 16 0 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 SYS(0.9)S(0.099)PDITQAIQEEEK 198.61 2.33E-16 88233000 2333.9 1923.1 2102.7 1927.8 2308.2 1968.9 2285.7 1861.6 1811 2048.1 TRUE FALSE FALSE 2060.32378 1982.348432 2216.378322 2006.424017 2137.928685 1931.346513 2373.860215 2073.517019 1736.349813 2035.91781 1.011987699 0.973687848 1.088638407 0.985513269 1.050105596 0.948636779 1.1659902 1.018467941 0.852858502 1 10.99146361 -4.767402689 24.99991711 1.008097671 1.09222907 0.2255063 0.06967245 97.07458829 406972.9162 0.005905329 0.018425573 1.71E-05 4.767402689 0.084131399 GIGTPPNTTPIKNGS(ph)PEIK ddPTM_HeLa_CUDC101_4h_R1 1 GIGTPPNTTPIKNGSPEIK 19 1 O96028-3;O96028;O96028-6;D6RIS1;D6R9V2;O96028-7;O96028-5 O96028-3;O96028-5 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 GIGT(0.002)PPNT(0.042)T(0.042)PIKNGS(0.914)PEIK 58.246 0.021116 44717000 1218.5 1702.3 1405.3 1527 1743.5 1808.5 1653.4 1980 1815.8 1359.3 TRUE FALSE FALSE 1075.669277 1754.745845 1481.274769 1589.27766 1614.885479 1774.005876 1717.172192 2205.395197 1740.951955 1351.214823 0.796075693 1.298643129 1.096254084 1.1761843 1.195136 1.312896991 1.270835816 1.632157344 1.288434619 1 10.40004134 -4.767400374 0.382357587 0.904822797 1.814800143 0.309379618 0.173553147 1.83124094 0.240158513 0.046000994 0.716412812 1.71E-05 4.767400374 0.909977345 S(ph)PLSPTETFSWPDVR ddPTM_HeLa_CUDC101_4h_R1 4 SPLSPTETFSWPDVR 15 0 A1L390-3;A1L390;G3V311;A1L390-2 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 S(1)PLSPTETFSWPDVR;S(1)PLSPTETFSWPDVR;S(1)PLSPTETFSWPDVR;S(1)PLSPTETFSWPDVR ;;; 252.52 4.07E-56 80330000 2270.68 2508.68 2129.24 2292.02 2444.4 2212.66 2710.58 2232.69 2480.65 2477.23 TRUE FALSE FALSE 2004.514333 2585.969457 2244.353155 2385.498483 2264.081482 2170.457197 2815.127979 2486.850405 2378.396557 2462.495326 0.814017518 1.050141874 0.911414179 0.968732187 0.919425697 0.881405611 1.143201349 1.009890406 0.965848151 1 11.26590527 -4.767136071 24.99757237 0.923131923 1.076545887 0.368234038 0.069734001 99.4806652 436538.767 0.011416195 0.035678114 1.71E-05 4.767136071 0.153413964 ESEDS(ph)ETQPFDTHLEAYGPCLS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 2 ESEDSETQPFDTHLEAYGPCLSPPR 25 0 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 0 ES(0.197)EDS(0.72)ET(0.083)QPFDT(0.001)HLEAY(0.012)GPCLS(0.987)PPR;ES(0.057)EDS(0.618)ET(0.325)QPFDT(0.013)HLEAY(0.012)GPCLS(0.976)PPR ; 74.861 0.001042 7174700 1402.82 1222.36 1236.31 1415.16 1337.32 1793.72 1851.71 2036.4 1374.77 1450.79 TRUE FALSE FALSE 1238.383566 1260.019463 1303.148658 1472.876342 1238.668568 1759.50778 1923.131075 2268.215545 1318.101399 1442.160637 0.858700158 0.873702576 0.903608534 1.021298394 0.858897779 1.220049788 1.333506841 1.572789804 0.913976824 1 10.49401615 -4.766958253 1.354314162 0.925026681 1.593988259 0.9150822 0.067070104 0.134758413 0.376051638 0.011101161 0.095732924 1.71E-05 4.766958253 0.668961578 TLS(ph)DDLDEAAKEFQEK ddPTM_HeLa_CUDC101_4h_R1 1 TLSDDLDEAAKEFQEK 16 1 A0A087WV29;Q9H0A0-2;Q9H0A0 A0A087WV29 NAT10 N-acetyltransferase 10 1 0 T(0.203)LS(0.797)DDLDEAAKEFQEK 68.525 0.019569 2491100 1240.8 1273.8 1370.2 1315.9 1553.4 1304.3 883.15 917.08 1453.6 1347.5 TRUE FALSE FALSE 1095.355305 1313.044268 1444.277157 1369.56809 1438.808777 1279.422651 917.2133913 1021.47668 1393.681993 1339.48501 0.817743608 0.980260517 1.078233161 1.022458691 1.074150712 0.955160111 0.684750769 0.762589109 1.040461059 1 10.38746272 -4.766677899 24.97731344 0.950094255 0.723669912 0.595401177 0.083177352 78.94125606 376401.2809 0.014415699 0.045192098 1.71E-05 4.766677899 -0.226424343 EVYELLDS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 4 EVYELLDSPGK 11 0 E9PBS1;P22234;P22234-2 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 EVYELLDS(1)PGK;EVYELLDS(1)PGK;EVYELLDS(1)PGK;EVYELLDS(1)PGK ;;; 222.73 2.32E-32 648860700 20150.18 15918.1 14861.6 15536.07 15321.93 13886.69 12091.31 6100.98 16313.63 16846.32 TRUE FALSE FALSE 17788.20645 16408.51779 15665.06305 16169.69809 14191.66175 13621.82453 12557.67588 6795.490902 15641.17527 16746.11734 1.0622287 0.97984013 0.935444481 0.965578931 0.84745983 0.813431809 0.749885817 0.405795013 0.934018014 1 14.03153902 -4.077763439 0.592324543 1.02391535 3.47E-16 0.901566836 0.055864424 0.743915228 0.152658641 0.009253123 0.544925177 8.36E-05 4.077763439 -1.02391535 down RTGGPAYGPSSDVSTAS(ph)ETESEKR ddPTM_HeLa_CUDC101_4h_R1 1 RTGGPAYGPSSDVSTASETESEKR 24 2 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 0 RTGGPAYGPSS(0.002)DVS(0.002)T(0.159)AS(0.598)ET(0.12)ES(0.12)EKR 80.664 4.10E-05 19756000 1481.5 1085.4 1207.6 1239.3 1130.2 1169.5 801.9 832.53 1166 942.68 TRUE FALSE FALSE 1307.840816 1118.839887 1272.886509 1289.844011 1046.827398 1147.193736 832.8295516 927.30185 1117.936986 937.0728974 1.395666036 1.193973159 1.358364448 1.376460694 1.117124826 1.224231049 0.888756418 0.989572799 1.193009626 1 9.872017473 -4.766609363 24.68363888 1.213899557 0.939164569 0.487939071 0.11894362 88.29357191 421561.9888 0.022896161 0.071881696 1.71E-05 4.766609363 -0.274734988 LLESSLSS(ph)SEGEEPVEYK ddPTM_HeLa_CUDC101_4h_R1 2 LLESSLSSSEGEEPVEYK 18 0 P08648 P08648 ITGA5 Integrin alpha-5;Integrin alpha-5 heavy chain;Integrin alpha-5 light chain 1 0 LLESSLS(0.454)S(0.544)S(0.002)EGEEPVEYK;LLESSLS(0.066)S(0.934)S(0.001)EGEEPVEYK ; 277 1.14E-86 32039000 11833.2 9390.5 5440.7 8654.3 9719.6 8278.2 6268.6 6166.1 5579 5763.2 TRUE FALSE FALSE 10446.13023 9679.810175 5734.840699 9007.259761 9002.604472 8120.307127 6510.382002 6868.0239 5349.031259 5728.92023 1.823402982 1.689639546 1.001033435 1.572243878 1.571431284 1.417423668 1.136406468 1.198833921 0.933689254 1 12.48404753 -4.766144805 23.57473368 1.418052121 1.167620154 0.059901432 0.295058957 106.8856163 535541.4927 0.047521794 0.150028802 1.71E-05 4.766144805 -0.250431967 PSSGTLASAS(ph)PDWVGPSTR ddPTM_HeLa_CUDC101_4h_R1 1 PSSGTLASASPDWVGPSTR 19 0 H0Y3A3;A0A3B3ITG3;Q5VWQ8-3;Q5VWQ8-4;Q5VWQ8-2;Q5VWQ8-5;Q5VWQ8 H0Y3A3 DAB2IP Disabled homolog 2-interacting protein 1 0 PSSGTLAS(0.041)AS(0.949)PDWVGPS(0.005)T(0.005)R 82.01 0.0022124 0 531.08 547.61 527.07 371.69 695.09 603.61 769.21 670.16 463.98 778.84 TRUE FALSE FALSE 468.8276075 564.481215 555.5649985 386.8491248 643.8145955 592.0971449 798.8786874 746.4483055 444.854548 774.207425 0.605558139 0.729108501 0.717591928 0.499671163 0.831578947 0.764778438 1.031866476 0.964145113 0.574593492 1 9.596576334 -4.76539929 24.81468636 0.773324702 0.99800583 0.330232544 0.143083397 98.22091542 615521.0156 0.024379321 0.077342266 1.72E-05 4.76539929 0.224681127 DQDS(ph)SDDERALEDWVSSETSALPRPR ddPTM_HeLa_CUDC101_4h_R1 1 DQDSSDDERALEDWVSSETSALPRPR 26 2 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 0 DQDS(0.5)S(0.5)DDERALEDWVSSETSALPRPR 43.932 0.024757 8172900 770.55 724.75 702.98 614.89 873.77 679.37 986.34 735.23 665.38 846.44 TRUE FALSE FALSE 680.2272971 747.0786885 740.9852252 639.967872 809.3137279 666.4121492 1024.383464 818.9256113 637.9527548 841.4053372 0.808441861 0.887893926 0.880651919 0.760594025 0.961859513 0.792022726 1.217467276 0.973283119 0.758199083 1 9.716657159 -4.765396567 24.9999583 0.890928915 1.095375198 0.455066032 0.099018417 66.52525342 420293.5539 0.01370041 0.04342934 1.72E-05 4.765396567 0.204446283 KEGITGPPADSSKPIGPDDAIDALSSDFTCGS(ph)PTAAGK ddPTM_HeLa_CUDC101_4h_R1 1 KEGITGPPADSSKPIGPDDAIDALSSDFTCGSPTAAGK 38 2 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;H0YA91;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 1 0 KEGITGPPADS(0.003)S(0.003)KPIGPDDAIDALS(0.037)S(0.037)DFT(0.207)CGS(0.455)PT(0.258)AAGK 47.23 0.0067565 372600000 1600.8 1624.4 1466 1146.5 1753.6 1444 1849.9 1507.2 1837.9 1619.9 TRUE FALSE FALSE 1413.156651 1674.445839 1545.256394 1193.259226 1624.240422 1416.458106 1921.251263 1678.773556 1762.140984 1610.264763 0.877592731 1.039857468 0.95962877 0.741032936 1.008679106 0.879642987 1.193127557 1.042545049 1.094317546 1 10.6530822 -4.765019618 24.99961586 0.936292698 1.117836315 0.299652114 0.10082626 60.96706288 425727.8074 0.012174104 0.038746546 1.72E-05 4.765019618 0.181543617 S(ph)PEAVGPELEAEEK ddPTM_HeLa_CUDC101_4h_R1 2 SPEAVGPELEAEEK 14 0 Q96N64-3;Q96N64-2;Q96N64 Q96N64-3 PWWP2A PWWP domain-containing protein 2A 1 0 S(1)PEAVGPELEAEEK;S(1)PEAVGPELEAEEK ; 220.25 1.30E-32 160485000 4244.8 3419.1 3891.2 3479.4 3863.4 3870.7 3140.5 3147.3 3713 3678.9 TRUE FALSE FALSE 3747.230979 3524.438418 4101.570042 3621.304971 3578.404679 3796.872847 3261.630137 3505.57591 3559.948568 3657.017739 1.024668527 0.963746602 1.121561429 0.990234456 0.978503506 1.038242939 0.891882504 0.958588708 0.973456741 1 11.83645191 -4.764960327 24.99989099 1.013838328 0.925235598 0.363317531 0.045474235 56.11988321 398484.7821 0.005590186 0.017790042 1.72E-05 4.764960327 -0.08860273 MEKAPIDTS(ph)DVEEK ddPTM_HeLa_CUDC101_4h_R1 1 MEKAPIDTSDVEEK 14 1 D6RIY6;Q06265-3;Q06265-4;Q06265;Q06265-2 D6RIY6 EXOSC9 Exosome complex component RRP45 1 0 MEKAPIDT(0.272)S(0.728)DVEEK 65.287 0.03288 9487100 2214.7 2112.7 2354.2 2187 3003 2803.7 2496.4 3043.4 2846.3 2103.2 TRUE FALSE FALSE 1955.096223 2177.789783 2481.475173 2276.195313 2781.474673 2750.224094 2592.686984 3389.848354 2728.974309 2090.690073 0.935143974 1.041660747 1.186916801 1.088729192 1.330409853 1.315462358 1.24011063 1.62140166 1.305298353 1 11.0297635 -4.764772832 0.409631572 0.957725396 1.758682861 0.472683728 0.139295573 1.116407687 0.167771758 0.024942779 0.406468149 1.72E-05 4.764772832 0.800957466 RS(ph)QSIEQESQEK ddPTM_HeLa_CUDC101_4h_R1 1 RSQSIEQESQEK 12 1 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 RS(0.98)QS(0.02)IEQESQEK 100.23 0.0060974 29952000 3528.3 3577.7 3565.8 3617.7 3636.8 3495.7 2574 2615.4 3749.4 3354.1 TRUE FALSE FALSE 3114.718023 3687.924696 3758.577934 3765.245443 3368.52051 3429.025347 2673.280042 2913.126564 3594.848145 3334.149664 0.934186625 1.106106524 1.127297306 1.129297069 1.010308729 1.028455736 0.801787656 0.873723995 1.078190396 1 11.70310315 -4.764428536 24.99970695 1.007013666 0.837755798 0.520647639 0.072607117 54.08439786 452352.4639 0.011861472 0.037980498 1.72E-05 4.764428536 -0.169257869 T(ph)SSFTEQLDEGTPNR ddPTM_HeLa_CUDC101_4h_R1 1 TSSFTEQLDEGTPNR 15 0 Q13439-3;Q13439-4;Q13439;Q13439-5;E7EVX2;Q86W71;C9J0Y3;C9JHJ5 Q13439-3 GOLGA4 Golgin subfamily A member 4 1 0 T(0.694)S(0.102)S(0.102)FT(0.102)EQLDEGTPNR 293.38 8.63E-122 100150000 1775.9 1422.6 1508.7 1756.3 1996.9 1815.6 2003.9 1893.1 1871.6 2002.1 TRUE FALSE FALSE 1567.731694 1466.42862 1590.264886 1827.929505 1849.592665 1780.970455 2081.191094 2108.602852 1794.451856 1990.19142 0.787729099 0.736827928 0.799051222 0.918469192 0.929354155 0.894873949 1.045724081 1.059497509 0.90164787 1 10.95869148 -4.764412327 3.93558864 0.881374186 1.058865678 0.488401983 0.07391514 0.188273882 6.383048619 0.014153324 0.053641376 1.72E-05 4.764412327 0.177491492 QQDLHLES(ph)PQRQPEYS(ph)PESPR ddPTM_HeLa_CUDC101_4h_R1 1 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 0 QQDLHLES(0.998)PQRQPEY(0.423)S(0.521)PES(0.058)PR 60.09 0.011805 39547000 2565.5 2299.4 2079 2377.3 2813.1 2458.3 1512.4 1558.3 2714.2 2486.2 TRUE FALSE FALSE 2264.775979 2370.241789 2191.397029 2474.25657 2605.583217 2411.412023 1570.733775 1735.690573 2602.319527 2471.411972 0.916389499 0.959063813 0.886698395 1.001151001 1.054289308 0.975722401 0.635561287 0.702307261 1.052968731 1 11.27111981 -4.764077304 24.99999988 0.96476766 0.66893421 0.84033796 0.05401292 16.90877945 160255.0379 0.007268696 0.023365832 1.72E-05 4.764077304 -0.295833451 AADSGS(ph)WER ddPTM_HeLa_CUDC101_4h_R1 1 AADSGSWER 9 0 Q674X7-3 Q674X7-3 KAZN Kazrin 1 0 AADS(0.033)GS(0.967)WER 100.82 0.0022111 0 2256.6 2189.9 1977.9 2052.5 1970.6 2072.8 1553.1 1575.7 2086.7 1900.1 TRUE FALSE FALSE 1992.084769 2257.368223 2084.831257 2136.209822 1825.232764 2033.264794 1613.003587 1755.071319 2000.685343 1888.798121 1.054683794 1.195134725 1.103787236 1.13098896 0.966346135 1.076486032 0.853984113 0.929200056 1.059237258 1 10.8832528 -4.763878391 24.99956032 1.04997848 0.891592059 0.526177719 0.06607563 40.75707587 417777.9465 0.01009998 0.032524503 1.72E-05 4.763878391 -0.158386421 RVSGPDPKPGSNCSPAQSVLS(ph)EVPSVPTNGMAK ddPTM_HeLa_CUDC101_4h_R1 1 RVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAK 33 2 P22314;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 RVS(0.029)GPDPKPGS(0.005)NCS(0.027)PAQS(0.229)VLS(0.708)EVPS(0.002)VPTNGMAK 53.995 0.0025133 259240000 2971.2 2499.9 2681.3 2964.6 3360.9 2609.8 1734.2 1675.6 2674.9 2272.6 TRUE FALSE FALSE 2622.92044 2576.918956 2826.259188 3085.509202 3112.973103 2560.022413 1801.088675 1866.343531 2564.63949 2259.082474 1.161055637 1.140692731 1.251065077 1.365824062 1.377981166 1.133213348 0.797265569 0.826151127 1.135257132 1 11.14152123 -4.76383229 23.50865134 1.140015993 0.811708181 0.600419341 0.118525241 19.00579868 186743.1429 0.021104008 0.068132384 1.72E-05 4.76383229 -0.328307812 NATDLQNSS(ph)MSEEELTK ddPTM_HeLa_CUDC101_4h_R1 5 NATDLQNSSMSEEELTK 17 0 Q5QNY5;P40855;H0YJ60;P40855-5 Q5QNY5 PEX19 Peroxisomal biogenesis factor 19 1 0 NATDLQNS(0.152)S(0.753)MS(0.095)EEELTK;NATDLQNS(0.274)S(0.391)MS(0.334)EEELTK;NATDLQNS(0.041)S(0.875)MS(0.084)EEELTK;NATDLQNS(0.29)S(0.616)MS(0.094)EEELTK;NATDLQNS(0.072)S(0.833)MS(0.095)EEELTK ;;;; 214.54 4.56E-24 106511500 14697.1 13011.8 12032.1 12114.9 13902.4 12946.2 12959.7 11692.7 14741.4 12932.8 TRUE FALSE FALSE 12974.32822 13412.67814 12682.59172 12608.99799 12876.84765 12699.2728 13459.55997 13023.7497 14133.75325 12855.87513 1.009213926 1.043311171 0.986521072 0.980796551 1.001631357 0.987818618 1.046957895 1.013058199 1.099400322 1 13.6501402 -4.763493061 24.99999981 1.00318477 1.030008046 0 0.035363955 50.01492464 608882.6654 0.002466341 0.007976418 1.72E-05 4.763493061 0.026823275 (ac)S(ph)MPDAMPLPGVGEELK ddPTM_HeLa_CUDC101_4h_R1 1 SMPDAMPLPGVGEELK 16 0 O43865 O43865 AHCYL1 Putative adenosylhomocysteinase 2 1 0 S(1)MPDAMPLPGVGEELK 59.57 0.022117 2167000 1719 1678.1 1398.4 1808.6 2064.8 1809.9 2302.2 2095.1 1868.4 2036.4 TRUE FALSE FALSE 1517.501426 1729.800272 1474.001734 1882.362525 1912.483818 1775.379173 2390.996625 2333.597715 1791.383761 2024.287402 0.749647221 0.854523063 0.72815833 0.929888969 0.944768917 0.877039086 1.181154723 1.152799604 0.884945369 1 10.98319842 -4.763471387 24.89855151 0.874180778 1.166977246 0.694197906 0.078524016 25.69122538 314821.7421 0.014709886 0.047605056 1.72E-05 4.763471387 0.292796468 GSSLS(ph)GTDDGAQEVVKDILEDVVTSAIK ddPTM_HeLa_CUDC101_4h_R1 1 GSSLSGTDDGAQEVVKDILEDVVTSAIK 28 1 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 GS(0.057)S(0.053)LS(0.445)GT(0.445)DDGAQEVVKDILEDVVTSAIK 63.697 0.00083018 238240000 818.69 472.36 415.53 484.15 584.88 563.33 635.03 597.57 472.08 427.13 TRUE FALSE FALSE 722.7243993 486.9128517 437.9948087 503.8957297 541.7345676 552.5854188 659.5233198 665.5949533 452.6206626 424.5894118 1.70217245 1.146785196 1.031572612 1.186783551 1.275902207 1.301458311 1.553320223 1.567620235 1.066019665 1 8.729924584 -4.76346112 5.470641771 1.287131465 1.564842214 0.272746624 0.199701732 0.243715108 22.9094807 0.038495963 0.134146313 1.72E-05 4.76346112 0.277710749 SAMDSPVPASMFAPEPS(ph)SPGAAR ddPTM_HeLa_CUDC101_4h_R1 3 SAMDSPVPASMFAPEPSSPGAAR 23 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 1 0 SAMDSPVPASMFAPEPS(0.5)S(0.5)PGAAR;SAMDSPVPASMFAPEPS(0.5)S(0.5)PGAAR;SAMDSPVPASMFAPEPS(0.5)S(0.5)PGAAR ;; 252.44 4.01E-59 55613900 10238.8 10198.2 9970.8 9455.5 11691.1 11051.3 10575.7 10652.7 10407 10624.4 TRUE FALSE FALSE 9038.623385 10512.39445 10509.85161 9841.13616 10828.67084 10840.51487 10983.60829 11865.36031 9978.019055 10561.2056 0.855832538 0.99537826 0.995137488 0.93181939 1.025325257 1.026446722 1.039995689 1.123485401 0.944780306 1 13.36648691 -4.763257644 0.625154085 0.936997348 1.158150371 0.587382068 0.043724531 1.350073794 0.51750612 0.011218318 0.188885787 1.72E-05 4.763257644 0.221153023 QVS(ph)PAASLR ddPTM_HeLa_CUDC101_4h_R1 1 QVSPAASLR 9 0 A0A2R8YH03;Q5VWN6 A0A2R8YH03 FAM208B Protein FAM208B 1 0 QVS(0.991)PAAS(0.009)LR 82.505 0.039241 7095800 1835.2 1820.6 1549.6 1614.3 2083.2 1677.9 1349.6 1150.6 2006.8 1884 TRUE FALSE FALSE 1620.080638 1876.690528 1633.376063 1680.138132 1929.526486 1645.896853 1401.654524 1281.579653 1924.078855 1872.793884 0.865060833 1.002080658 0.87216008 0.897129228 1.03029303 0.878845701 0.748429678 0.684314309 1.027384204 1 10.87097641 -4.763202341 2.81855397 0.937948439 0.697300794 0.707830411 0.060569354 0.11554071 1.810334503 0.008841835 0.039279677 1.73E-05 4.763202341 -0.240647645 TQS(ph)PEFEAQSSK ddPTM_HeLa_CUDC101_4h_R1 3 TQSPEFEAQSSK 12 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 TQS(0.998)PEFEAQS(0.002)SK;T(0.311)QS(0.688)PEFEAQSSK;T(0.002)QS(0.989)PEFEAQS(0.007)S(0.002)K ;; 218.21 1.07E-35 22081000 11860.9 8999.6 9136.1 8723.1 8683.6 9112.9 7815.6 6154.5 9815.3 12406.7 TRUE FALSE FALSE 10470.58328 9276.867009 9630.025201 9078.865722 8043.028128 8939.086616 8117.05031 6855.103403 9410.70918 12332.9044 0.848995739 0.752204567 0.780840011 0.73614985 0.652160097 0.724816015 0.658162104 0.555838526 0.763057012 1 13.59022497 -4.762785927 0.091163951 1.300458342 1.38E-17 0.477627613 0.082368847 8.025384425 0.142288547 0.574638988 1.644307209 1.73E-05 4.762785927 -1.300458342 LDQPVS(ph)APPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 LDQPVSAPPSPR 12 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 0 LDQPVS(1)APPS(1)PR 119 0.03416 182270000 7880.7 7323.2 6912.9 6960.3 7981 7592.6 8979.9 8314.5 7386.3 7950.5 TRUE FALSE FALSE 6956.936292 7548.819112 7286.632284 7244.171119 7392.25753 7447.783805 9326.257751 9260.989072 7081.833588 7903.210072 0.880267161 0.955158606 0.92198388 0.916611232 0.935348733 0.942374521 1.180059453 1.17180095 0.896070524 1 12.94822304 -4.762620897 23.03653526 0.939077512 1.175930392 0.904043615 0.031834277 3.048069418 59450.57133 0.006124145 0.020039077 1.73E-05 4.762620897 0.23685288 SSLYS(ph)EVDVHFR ddPTM_HeLa_CUDC101_4h_R1 1 SSLYSEVDVHFR 12 0 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 0 S(0.001)S(0.001)LY(0.001)S(0.998)EVDVHFR 107.83 0.0062982 2147300 1139.2 1109 849.02 1234.8 1192.7 1088.3 1268.1 1093.7 1033.8 1232.2 TRUE FALSE FALSE 1005.664703 1143.166976 894.9205893 1285.160481 1104.716897 1067.542491 1317.011042 1218.202387 991.1863264 1224.87082 0.821037359 0.93329595 0.730624467 1.049221241 0.901904821 0.871555166 1.075224441 0.994555808 0.80921703 1 10.25841389 -4.762478506 24.9985394 0.908098639 1.034890139 0.273410413 0.090817508 28.66994395 689812.3591 0.012948198 0.042381973 1.73E-05 4.762478506 0.126791501 SSRGQEEIS(ph)GALPVAS(ph)PASSR ddPTM_HeLa_CUDC101_4h_R1 2 SSRGQEEISGALPVASPASSR 21 1 Q9UBK8;Q9UBK8-1;H0Y9D5;H0Y8S9 Q9UBK8 MTRR Methionine synthase reductase 2 0 S(0.162)S(0.184)RGQEEIS(0.655)GALPVAS(0.874)PAS(0.103)S(0.022)R;S(0.232)S(0.303)RGQEEIS(0.466)GALPVAS(0.957)PAS(0.042)S(0.001)R ; 131.3 4.99E-06 17602200 3391.8 3085.8 2909 3180.9 3999.2 2787.1 2819.5 1333.18 3794.8 3039.6 TRUE FALSE FALSE 2994.218346 3180.86984 3066.269339 3310.630851 3704.186984 2733.940711 2928.249059 1484.943822 3638.376738 3021.520324 0.990964159 1.052738191 1.014810099 1.095683794 1.225934823 0.904822877 0.969131015 0.491455844 1.204154316 1 11.56105893 -4.076672422 1.97241835 1.020339399 0.113777735 0.737477446 0.09899994 0.49276636 1.308819283 0.011566515 0.953411122 8.38E-05 4.076672422 -0.906561663 down SGGGPGPSGSET(ph)PPPPR ddPTM_HeLa_CUDC101_4h_R1 2 SGGGPGPSGSETPPPPR 17 0 P27987-2;P27987 P27987-2 ITPKB Inositol-trisphosphate 3-kinase B 1 0 SGGGPGPSGSET(0.999)PPPPR;SGGGPGPS(0.001)GS(0.004)ET(0.995)PPPPR ; 159.64 0.0002268 16607700 2331.67 2047.07 2568.3 2113.39 2192.45 2169.9 2684.8 2165.78 2711.9 2630.9 TRUE FALSE FALSE 2058.355177 2110.1378 2707.150067 2199.583179 2030.717331 2128.512773 2788.353635 2412.323641 2600.114334 2615.25129 0.787058278 0.806858526 1.035139559 0.841059973 0.776490328 0.813884609 1.066189565 0.922406061 0.994212045 1 11.35273386 -4.762312247 24.9996703 0.882980294 0.994297803 0.17954283 0.096136692 31.64974777 906619.7308 0.014903275 0.048891913 1.73E-05 4.762312247 0.111317509 GLNVIGASDQS(ph)PLQSPS(ph)NLR ddPTM_HeLa_CUDC101_4h_R1 1 GLNVIGASDQSPLQSPSNLR 20 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;Q9HAU0-5;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 2 0 GLNVIGAS(0.002)DQS(0.998)PLQS(0.382)PS(0.619)NLR 119.37 0.00024724 6601500 1856.1 1458.2 1266.9 1490.6 1773.1 1641.2 1872.4 1678.2 1614.9 1786.7 TRUE FALSE FALSE 1638.530772 1503.125414 1335.392446 1551.393111 1642.301946 1609.896844 1944.619095 1869.239504 1548.333138 1776.072629 0.922558427 0.84631979 0.751879413 0.873496436 0.924681749 0.90643638 1.094898409 1.052456681 0.871773549 1 10.79447486 -4.761599804 24.99999998 0.926979824 1.073677582 0.463456176 0.070536426 3.569564497 556752.3089 0.011887746 0.039333654 1.73E-05 4.761599804 0.146697758 GIQLS(ph)PGVGSSAGPPGDLEDDEGLKHLQQEAEK ddPTM_HeLa_CUDC101_4h_R1 1 GIQLSPGVGSSAGPPGDLEDDEGLKHLQQEAEK 33 1 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 GIQLS(0.892)PGVGS(0.085)S(0.023)AGPPGDLEDDEGLKHLQQEAEK 88.446 3.00E-09 12693000 2243.3 2325.9 1871.4 2023 2562.2 2222.3 1800.5 1759.8 2239.9 2222.3 TRUE FALSE FALSE 1980.343775 2397.558222 1972.573545 2105.506684 2373.191611 2179.91333 1869.945888 1960.128519 2147.570374 2209.081661 0.896455667 1.085318965 0.892938265 0.953114012 1.074288766 0.986796174 0.846481106 0.88730469 0.972155268 1 11.10923103 -4.761449996 24.99999999 0.966414834 0.866892877 0.333353377 0.062172813 0.270300641 639958.4255 0.009259858 0.030711201 1.73E-05 4.761449996 -0.099521957 EKLQEEGGGS(ph)DEEETGS(ph)PSEDGMQSAR ddPTM_HeLa_CUDC101_4h_R1 1 EKLQEEGGGSDEEETGSPSEDGMQSAR 27 1 Q13610-2;Q13610 Q13610-2 PWP1 Periodic tryptophan protein 1 homolog 2 0 EKLQEEGGGS(1)DEEET(0.022)GS(0.952)PS(0.026)EDGMQSAR 116.51 1.52E-08 28317000 1531.1 994.16 1411.9 1118.2 1360.3 1258.4 1377.5 1230.7 1167.9 1226 TRUE FALSE FALSE 1351.626779 1024.788891 1488.231585 1163.805029 1259.953379 1234.398117 1430.630636 1370.797913 1119.758668 1218.707697 1.109065596 0.84088161 1.221155481 0.954950093 1.033843785 1.012874637 1.173891524 1.124796304 0.918808234 1 10.25113643 -4.76082161 24.99999274 1.039377293 1.149343937 0.190970131 0.101219524 18.99387213 768464.4101 0.012225555 0.040813878 1.73E-05 4.76082161 0.109966644 (ac)S(ph)DSGEQNYGERES(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 SDSGEQNYGERESR 14 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 0 S(0.751)DS(0.249)GEQNYGERES(1)R;S(0.888)DS(0.112)GEQNYGERES(1)R ; 77.221 0.00011939 0 140.62 179.35 273.09 52.211 266.4 191.44 257.142 235.73 204.34 256.464 TRUE FALSE FALSE 124.1367368 184.8755609 287.8540715 54.34039026 246.7482027 187.788601 267.0600531 262.5645503 195.9170187 254.9385407 0.48692809 0.725176979 1.129111631 0.213150943 0.967873284 0.73660342 1.047546802 1.02991313 0.768487252 1 7.994005681 -4.760629668 24.87085353 0.752067263 1.038730071 0.175383272 0.247451458 27.15635455 833956.9655 0.037090854 0.124281248 1.74E-05 4.760629668 0.286662808 REEDEPEERS(ph)GDETPGSEVPGDK ddPTM_HeLa_CUDC101_4h_R1 1 REEDEPEERSGDETPGSEVPGDK 23 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 REEDEPEERS(0.881)GDET(0.05)PGS(0.068)EVPGDK 59.242 0.0094416 13184000 2519.7 2727.1 2477.6 2411.6 2534.3 2634.8 2180.5 2169.3 2773.8 2715.5 TRUE FALSE FALSE 2224.344586 2811.118719 2611.54655 2509.955472 2347.349738 2584.54558 2264.602615 2416.244343 2659.46279 2699.348085 0.82403029 1.041406528 0.967473059 0.929837647 0.869598756 0.957470285 0.838944272 0.895121439 0.985224101 1 11.39839531 -4.760338971 24.99995585 0.927468215 0.867032855 0.153236183 0.063016578 53.60940087 1217771.533 0.010603455 0.035653883 1.74E-05 4.760338971 -0.06043536 VNQSALEAVTPS(ph)PSFQQR ddPTM_HeLa_CUDC101_4h_R1 4 VNQSALEAVTPSPSFQQR 18 0 Q9UKG1 Q9UKG1 APPL1 DCC-interacting protein 13-alpha 1 0 VNQSALEAVT(0.026)PS(0.973)PS(0.001)FQQR;VNQSALEAVT(0.001)PS(0.98)PS(0.019)FQQR;VNQSALEAVT(0.002)PS(0.978)PS(0.02)FQQR;VNQSALEAVT(0.016)PS(0.978)PS(0.005)FQQR ;;; 249.49 2.64E-56 272314000 8700.6 7298.81 7251 7970.4 8830.23 8116.17 9178.3 8092.3 8033.94 9189.2 TRUE FALSE FALSE 7680.728857 7523.677685 7643.010993 8295.467363 8178.841525 7961.36758 9532.310106 9013.494722 7702.777593 9134.54223 0.840844419 0.823651311 0.836715273 0.908142647 0.895375085 0.87156722 1.043545464 0.986748377 0.843258195 1 13.15711672 -4.760284914 24.99969599 0.903668542 1.015146941 0.448887224 0.055221183 29.34477932 635371.7127 0.010195426 0.034287005 1.74E-05 4.760284914 0.111478399 HLLNS(ph)PTDPFNR ddPTM_HeLa_CUDC101_4h_R1 3 HLLNSPTDPFNR 12 0 O95155;O95155-4;O95155-2;O95155-3 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 HLLNS(0.5)PT(0.5)DPFNR;HLLNS(1)PTDPFNR;HLLNS(1)PTDPFNR ;; 98.676 0.0081611 32621900 11131.69 8892.83 8542.76 9591.99 9916.78 9594.88 7597.23 7061.88 9461.09 9016.87 TRUE FALSE FALSE 9826.850173 9166.807552 9004.607446 9983.192812 9185.238896 9411.87365 7890.257706 7865.775874 9071.099866 8963.237256 1.096350559 1.022711693 1.004615541 1.113793212 1.02476802 1.050052942 0.880291069 0.877559709 1.01203389 1 13.12980417 -4.760199645 24.8986577 1.045500412 0.878925318 0.760694405 0.03617337 11.44844076 229898.7315 0.00585058 0.01970085 1.74E-05 4.760199645 -0.166575094 ASASRPQPAPADGADPPPAEEPEARPDGEGS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 3 ASASRPQPAPADGADPPPAEEPEARPDGEGSPGK 34 2 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 0 ASASRPQPAPADGADPPPAEEPEARPDGEGS(1)PGK;ASASRPQPAPADGADPPPAEEPEARPDGEGS(1)PGK;ASASRPQPAPADGADPPPAEEPEARPDGEGS(1)PGK ;; 69.576 2.29E-06 259372000 8379 7489 6470.68 7080.9 7230.9 7481.9 7705.3 7278.7 7726.9 7268.81 TRUE FALSE FALSE 7396.826322 7719.727213 6820.504534 7369.689708 6697.490913 7339.195223 8002.496002 8107.277786 7408.393912 7225.574795 1.023700748 1.068389358 0.943939372 1.019945114 0.92691462 1.01572476 1.107523793 1.122025308 1.025301671 1 12.81889664 -4.760088399 4.758511305 1.005260198 1.117698097 0.574550934 0.03860803 0.092493923 5.399242591 0.005167194 0.018670575 1.74E-05 4.760088399 0.112437899 AHS(ph)LLFENSDSFSEDSSTLGR ddPTM_HeLa_CUDC101_4h_R1 2 AHSLLFENSDSFSEDSSTLGR 21 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 AHS(1)LLFENSDSFSEDSSTLGR;AHS(1)LLFENSDSFSEDSSTLGR ; 188.49 1.16E-13 24983000 3470.7 3608.1 3160.7 3204 3297 3396.8 2925.2 2881.3 3284.6 3314.8 TRUE FALSE FALSE 3063.869807 3719.261284 3331.577003 3334.672969 3053.786879 3332.011699 3038.025944 3209.295545 3149.207398 3295.083422 0.929830725 1.128730538 1.011075161 1.012014733 0.926770733 1.011207084 0.921987566 0.973964885 0.955729186 1 11.68609928 -4.759920691 24.99993492 0.983659624 0.947976233 0.070694606 0.05647291 98.13317762 1615252.53 0.008277429 0.028046857 1.74E-05 4.759920691 -0.035683391 ILLYY(ph)IAGSLS(ph)T(ph)MFR ddPTM_HeLa_CUDC101_4h_R1 1 ILLYYIAGSLSTMFR 15 0 O14929 O14929 HAT1 Histone acetyltransferase type B catalytic subunit 3 0 ILLY(0.003)Y(0.889)IAGS(0.135)LS(0.978)T(0.994)MFR 58.32 0.0029526 0 804.99 557.78 757.39 614.21 825.65 799.03 417.02 470.03 779.38 760.21 TRUE FALSE FALSE 710.6302925 574.9645407 798.3367944 639.2601386 764.7434444 783.789834 433.1046011 523.5363153 747.2536265 755.6882371 0.940374956 0.760848869 1.056436709 0.845931043 1.011982729 1.03718676 0.573126032 0.692794051 0.988838505 1 9.561647356 -4.759552227 24.99999823 0.959626914 0.632959957 0.673182505 0.089767764 18.86382885 249877.0104 0.011766696 0.039959122 1.74E-05 4.759552227 -0.326666957 HPPDDDLSQDSPEQEAS(ph)KSPR ddPTM_HeLa_CUDC101_4h_R1 2 HPPDDDLSQDSPEQEASKSPR 21 1 Q9P0K8-2;Q9P0K8 Q9P0K8-2 FOXJ2 Forkhead box protein J2 1 0 HPPDDDLSQDS(0.008)PEQEAS(0.496)KS(0.496)PR;HPPDDDLSQDS(0.009)PEQEAS(0.496)KS(0.496)PR ; 74.793 0.0015202 49253000 4531.1 4194.3 3939 3911.1 4237.1 4290.8 3331.4 3356.3 3985.5 4019.1 TRUE FALSE FALSE 3999.971327 4323.521412 4151.954255 4070.611563 3924.537574 4208.960139 3459.893214 3738.367625 3821.216003 3995.194214 1.001195715 1.082180535 1.039237151 1.018877017 0.982314592 1.053505765 0.866013773 0.935716119 0.956453128 1 11.96404992 -4.759359328 24.99999884 1.012008525 0.90086493 0.601792423 0.037540893 24.19352391 290757.7761 0.004671497 0.015899885 1.74E-05 4.759359328 -0.111143595 ELQEAAAVPTT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 ELQEAAAVPTTPR 13 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 ELQEAAAVPT(0.012)T(0.988)PR 112.62 0.019 8454400 4878 3675.6 3651.2 4130.7 4353.2 4158.6 3007.6 2914.8 3790.5 3623 TRUE FALSE FALSE 4306.208235 3788.840879 3848.594916 4299.1678 4032.073109 4079.281634 3123.604139 3246.60905 3634.253986 3601.450235 1.19568728 1.052031996 1.068623656 1.193732391 1.119569297 1.132677496 0.867318423 0.901472695 1.009108484 1 11.81436225 -4.759094591 24.99992496 1.101004163 0.884395481 0.633112337 0.064488749 32.75294134 349184.8721 0.010935769 0.037344634 1.74E-05 4.759094591 -0.216608682 SIQEIQELDKDDES(ph)LR ddPTM_HeLa_CUDC101_4h_R1 1 SIQEIQELDKDDESLR 16 1 J3KTF8;J3QQX2;P52565;J3KRE2;J3KRY1;P52565-2;J3KS60 J3KTF8 ARHGDIA Rho GDP-dissociation inhibitor 1 1 0 SIQEIQELDKDDES(1)LR 57.537 0.037387 3881300 977.75 844.15 708.43 736.23 774.19 814.9 920.42 845.14 905.82 812.25 TRUE FALSE FALSE 863.1396272 870.1572609 746.7298687 766.2566417 717.0795461 799.3571402 955.9209077 941.3473214 868.4817162 807.4187009 1.069011191 1.077702634 0.924835984 0.949020181 0.888113621 0.990015638 1.183922179 1.165872577 1.075627447 1 9.657173192 -4.759082159 24.99471804 1.010195318 1.174897441 0.559016462 0.062373496 38.19076414 404926.4629 0.009643622 0.032931447 1.74E-05 4.759082159 0.164702123 YMAENPTAGVVQEEEEDNLEYDS(ph)DGNPIAPTKK ddPTM_HeLa_CUDC101_4h_R1 1 YMAENPTAGVVQEEEEDNLEYDSDGNPIAPTKK 33 1 A0A0A0MSJ0;Q86XP3-2;Q86XP3;J3KRE3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 1 0 YMAENPTAGVVQEEEEDNLEY(0.218)DS(0.781)DGNPIAPT(0.001)KK 67.262 0.0001639 40995000 2547.3 2421.1 2449.4 2231.8 2682.2 2345.9 3078.2 2772.1 2829.5 2538.4 TRUE FALSE FALSE 2248.709355 2495.691221 2581.821973 2322.822451 2484.33945 2301.155866 3196.927205 3087.664659 2712.866812 2523.301484 0.891177439 0.989057882 1.023192032 0.920548918 0.984559105 0.911962316 1.266962044 1.22366062 1.075125913 1 11.30109687 -4.758952263 24.99999931 0.954402004 1.245311439 0.784409313 0.056016103 16.22656818 163095.5785 0.006853804 0.02345561 1.74E-05 4.758952263 0.290909435 AGMSSNQSISS(ph)PVLDAVPRT(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMSSNQSIS(0.458)S(0.541)PVLDAVPRT(0.864)PS(0.136)R 101.86 8.82E-05 100790000 1013.6 1145.2 968.5 1216.1 1256.1 1092.5 1343.6 1208 1207.4 1302.1 TRUE FALSE FALSE 894.7873445 1180.482255 1020.86004 1265.697814 1163.440006 1071.662383 1395.423102 1345.513837 1157.630461 1294.355051 0.691299766 0.912023524 0.788701708 0.977859833 0.898856928 0.827950864 1.078083715 1.039524538 0.894368558 1 10.3380177 -4.758942518 24.96649131 0.861375288 1.058804196 0.419725109 0.085972022 56.94924991 569406.5294 0.016505278 0.05646455 1.74E-05 4.758942518 0.197428908 GADILRGS(ph)PSYTQASLGLLTPVSGTQEQTK ddPTM_HeLa_CUDC101_4h_R1 1 GADILRGSPSYTQASLGLLTPVSGTQEQTK 30 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YC29;E5RJ97 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 GADILRGS(0.289)PS(0.212)Y(0.201)T(0.236)QAS(0.048)LGLLT(0.013)PVS(0.001)GT(0.001)QEQTK 43.478 0.024875 11470000 1333.8 1288 1107.3 1091.9 1382.4 1172 1578.1 1362.2 1531.7 1319.7 TRUE FALSE FALSE 1177.453986 1327.681753 1167.163987 1136.432402 1280.423106 1149.646053 1638.967846 1517.267342 1468.562678 1311.850366 0.897552051 1.012067983 0.889708169 0.866282033 0.976043564 0.876354562 1.249355787 1.156585676 1.119458984 1 10.35738746 -4.758846347 24.99994814 0.942167989 1.202970803 0.618972463 0.077424874 21.94329554 211546.3629 0.00797386 0.027319467 1.74E-05 4.758846347 0.260802814 S(ph)MDELNHDFQALALEGR ddPTM_HeLa_CUDC101_4h_R1 4 SMDELNHDFQALALEGR 17 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR ;;; 128.4 0.00017317 34866700 6290.5 5369.45 5089.76 5083.2 5700.5 5560.5 6200.3 5793.27 5514.9 5681.8 TRUE FALSE FALSE 5553.137126 5534.87639 5364.927821 5290.514867 5279.985472 5454.442727 6439.447648 6452.75244 5287.573488 5648.004401 0.983203399 0.979970269 0.949880248 0.93670516 0.934840892 0.965729192 1.140127944 1.142483607 0.936184378 1 12.4635255 -4.758436763 24.99954316 0.978579193 1.141305851 0.877291273 0.026339121 20.52522836 170882.1719 0.004028031 0.013865054 1.74E-05 4.758436763 0.162726657 GGGESLQEAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 GGGESLQEASPR 12 0 P98175-5 P98175-5 RBM10 RNA-binding protein 10 1 0 GGGESLQEAS(1)PR;GGGESLQEAS(1)PR ; 158.86 0.00014386 53927000 4156.8 3488.9 4012.3 3604.5 4007.5 3988.8 4114.3 3843.9 4104.5 4316.8 TRUE FALSE FALSE 3669.546205 3596.388874 4229.217075 3751.50709 3711.874709 3912.720286 4272.989929 4281.474038 3935.310773 4291.123482 0.855148126 0.8380996 0.98557338 0.874248226 0.865012327 0.91181722 0.995774171 0.997751301 0.91708169 1 12.0671397 -4.758425849 24.30360721 0.917497356 0.99676279 0.315821015 0.051275744 68.25249138 550400.5023 0.009241044 0.031794508 1.74E-05 4.758425849 0.079265434 SES(ph)PQAEALLLPR ddPTM_HeLa_CUDC101_4h_R1 1 SESPQAEALLLPR 13 0 A0A087WXB3;A0A087X223;A0A087WYW1;Q96NU1-4;Q96NU1-5 A0A087WXB3 SAMD11 Sterile alpha motif domain-containing protein 11 1 0 S(0.182)ES(0.818)PQAEALLLPR 171.15 4.47E-07 4350600 1848.8 1414.7 1488.3 1671.9 1917.2 1520.7 1991.7 1577.2 1373 1773.1 TRUE FALSE FALSE 1632.086467 1458.28523 1568.762 1740.087309 1775.771976 1491.695181 2068.520536 1756.742073 1316.404359 1762.553522 0.925978386 0.82737075 0.890050702 0.987253599 1.007499604 0.846326175 1.173593034 0.996702824 0.74687341 1 10.78345135 -4.758240766 24.99999409 0.94741586 1.085147905 0.288648515 0.096023371 65.44886591 511513.6526 0.010193758 0.035175332 1.74E-05 4.758240766 0.137732045 (ac)AFAETYPAASS(ph)LPNGDCGRPR ddPTM_HeLa_CUDC101_4h_R1 1 AFAETYPAASSLPNGDCGRPR 21 1 P30520 P30520 ADSS Adenylosuccinate synthetase isozyme 2 1 0 AFAET(0.002)Y(0.001)PAAS(0.097)S(0.9)LPNGDCGRPR 45.28 0.021332 4840800 173.91 168.42 158.63 182.47 202.73 152.07 278.33 225.21 263.17 202.46 TRUE FALSE FALSE 153.5245334 173.6088206 167.2060176 189.9119153 187.7750118 149.1695181 289.0652813 250.8469961 252.3220212 201.2557589 0.762832995 0.86262784 0.83081358 0.943634688 0.933016838 0.741193787 1.436308123 1.246409034 1.253738142 1 7.652886256 -4.758193467 24.99999742 0.879195477 1.341358697 0.564321768 0.146682017 27.99506183 215606.6396 0.014476416 0.049995704 1.75E-05 4.758193467 0.46216322 RSAS(ph)PDDDLGSSNWEAADLGNEER ddPTM_HeLa_CUDC101_4h_R1 1 RSASPDDDLGSSNWEAADLGNEER 24 1 E9PM92;O00193;E9PQA1 E9PM92 C11orf58;SMAP Small acidic protein 1 0 RS(0.257)AS(0.743)PDDDLGSSNWEAADLGNEER 114.71 1.89E-07 261630000 1405.4 1498.3 1288.5 1041.7 1596.5 1314.1 1484.7 1376.6 1574.3 1355.8 TRUE FALSE FALSE 1240.661142 1544.460847 1358.160207 1084.185029 1478.729376 1289.035732 1541.965376 1533.30658 1509.406688 1347.735641 0.920552299 1.145967206 1.007734875 0.804449326 1.097195422 0.956445532 1.144115603 1.137690904 1.119957536 1 10.39632182 -4.757959524 24.9570053 0.976083305 1.140903329 0.178566124 0.099373292 68.0198003 487803.3035 0.011974888 0.041462684 1.75E-05 4.757959524 0.164820023 HRMS(ph)PGVAGSPR ddPTM_HeLa_CUDC101_4h_R1 2 HRMSPGVAGSPR 12 1 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 1 0 HRMS(0.992)PGVAGS(0.008)PR;HRMS(0.999)PGVAGS(0.001)PR ; 83.823 0.016604 23952000 1320.17 935.8 896.43 980.22 1164.45 1181.33 762.29 902.01 977.77 933.31 TRUE FALSE FALSE 1165.421674 964.6308888 944.8937174 1020.197608 1078.550843 1158.798098 791.6917806 1004.691172 937.4659067 927.7586306 1.256169046 1.039743374 1.018469337 1.099636883 1.162533883 1.249029716 0.853338093 1.082923014 1.010463148 1 9.857605707 -4.75780681 24.99999775 1.11856546 0.968130599 0.209089765 0.10323658 107.3077911 738477.9232 0.016176077 0.056099819 1.75E-05 4.75780681 -0.150434861 TEPAAEAEAASGPS(ph)ESPSPPAAEELPGSHAEPPVPAQGEAPGEQAR ddPTM_HeLa_CUDC101_4h_R1 3 TEPAAEAEAASGPSESPSPPAAEELPGSHAEPPVPAQGEAPGEQAR 46 0 P55884;P55884-2 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 1 0 TEPAAEAEAAS(0.007)GPS(0.347)ES(0.314)PS(0.314)PPAAEELPGS(0.018)HAEPPVPAQGEAPGEQAR;TEPAAEAEAAS(0.006)GPS(0.36)ES(0.316)PS(0.316)PPAAEELPGS(0.002)HAEPPVPAQGEAPGEQAR;TEPAAEAEAAS(0.004)GPS(0.353)ES(0.315)PS(0.315)PPAAEELPGS(0.013)HAEPPVPAQGEAPGEQAR ;; 105.67 3.16E-21 295277000 7507.1 6096.7 5495.8 6023.4 6966.6 6349.6 6446.7 5887.7 6183.1 6212 TRUE FALSE FALSE 6627.129118 6284.532101 5792.919572 6269.060287 6452.687797 6228.491959 6695.351378 6557.931969 5928.230001 6175.050748 1.07321047 1.017729628 0.938116917 1.015224092 1.044961096 1.008654376 1.084258519 1.062004547 0.960029357 1 12.59223528 -4.757543086 24.99941768 1.025140688 1.073131544 0.216949299 0.03977551 125.295488 803886.3854 0.005692456 0.01983145 1.75E-05 4.757543086 0.047990856 NMAPSQQS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 3 NMAPSQQSPVR 11 0 H0Y6B5;B7Z836;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-3;Q9NYB9-2;Q9NYB9-4;Q9NYB9;H7C3Q7 H0Y6B5 ABI2 Abl interactor 2 1 0 NMAPSQQS(1)PVR;NMAPSQQS(1)PVR;NMAPSQQS(1)PVR ;; 190.57 3.38E-11 257412000 9737.7 8124 6292.4 8607.2 7935.1 7962.4 6617.7 6226.8 6015.1 6742.9 TRUE FALSE FALSE 8596.261567 8374.290811 6632.586177 8958.238819 7349.743482 7810.530486 6872.946906 6935.633742 5767.155032 6702.792931 1.282489502 1.249373343 0.989525746 1.336493446 1.096519549 1.165265072 1.025385534 1.034737879 0.860410741 1 12.71054665 -4.757516656 24.45818566 1.147647405 1.030061642 0.042027572 0.140167286 123.2751529 768575.2563 0.01775232 0.061728722 1.75E-05 4.757516656 -0.117585763 SVVDSLDIES(ph)MTIEGEY(ph)S(ph)GPKLEDDK ddPTM_HeLa_CUDC101_4h_R1 1 SVVDSLDIESMTIEGEYSGPKLEDDK 26 1 M0R196;A0A087WY80;E7EU14 M0R196 PPP5D1 Protein PPP5D1 3 0 S(0.027)VVDS(0.101)LDIES(0.47)MT(0.471)IEGEY(0.965)S(0.966)GPKLEDDK 44.632 0.0028223 0 478.38 242.08 274.62 295.26 381.3 408.12 102.01 184.09 281.05 258.24 TRUE FALSE FALSE 422.3050216 249.5381979 289.4667879 307.301979 353.1722587 400.335791 105.9445599 205.0460615 269.465 256.703977 1.645105099 0.972085438 1.127628762 1.19710642 1.375795821 1.559523135 0.412711019 0.798764647 1.049711045 1 8.003961837 -4.757272338 24.99923829 1.285373701 0.605737708 0.531453629 0.235596962 64.62403631 387681.5696 0.038739974 0.135147579 1.75E-05 4.757272338 -0.679635993 YGGISTAS(ph)VDFEQPTR ddPTM_HeLa_CUDC101_4h_R1 1 YGGISTASVDFEQPTR 16 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 0 YGGIST(0.004)AS(0.996)VDFEQPTR 142.57 0.00029421 3919000 621.97 627.02 371.18 393.1 689.47 498.59 601.36 513.45 378.71 513.51 TRUE FALSE FALSE 549.0636194 646.337743 391.2471136 409.1323171 638.6091717 489.0802265 624.5546566 571.8990726 363.0994135 510.4556197 1.075634391 1.266197722 0.766466463 0.801504188 1.251057187 0.958124874 1.223523912 1.120369824 0.711324157 1 8.995641725 -4.756955895 24.99964941 1.028155283 1.17194688 0.105773259 0.184351524 175.5088068 978588.853 0.020766354 0.072732638 1.75E-05 4.756955895 0.143791597 VAPVINNGS(ph)PTILGK ddPTM_HeLa_CUDC101_4h_R1 2 VAPVINNGSPTILGK 15 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 VAPVINNGS(0.912)PT(0.088)ILGK;VAPVINNGS(1)PTILGK ; 249.36 8.00E-56 385600000 5306.4 4336.3 5017.9 4459.9 4881.4 4153.6 3649.3 1831.48 4976 5400.7 TRUE FALSE FALSE 4684.391836 4469.896263 5289.182852 4641.793999 4521.308847 4074.377 3790.054723 2039.96828 4770.887174 5368.576396 0.872557544 0.832603643 0.985211434 0.864622883 0.842180219 0.758930618 0.705970157 0.379983096 0.888668955 1 12.39032386 -4.074794541 0.727111629 0.932254976 1.21E-31 0.882613104 0.057298328 0.88906572 0.27570687 0.010859881 0.719814376 8.42E-05 4.074794541 -0.932254976 down S(ph)LSQGSTNATVLDVAQTGGHK ddPTM_HeLa_CUDC101_4h_R1 1 SLSQGSTNATVLDVAQTGGHK 21 0 A0A2R8Y661;H0Y8T6 A0A2R8Y661 RAPGEF2 1 0 S(0.466)LS(0.466)QGS(0.055)T(0.014)NATVLDVAQTGGHK 109.25 3.21E-05 0 1644.8 1125 1316.8 1112.4 1374.5 1223.4 1573.2 1400 1102.9 1162.9 TRUE FALSE FALSE 1451.999037 1159.659917 1387.990191 1157.76848 1273.105873 1200.065683 1633.878851 1559.370341 1057.437995 1155.983019 1.256072982 1.003180754 1.200701194 1.001544539 1.101318836 1.038134353 1.413410772 1.348956096 0.914752187 1 10.17490449 -4.756876047 24.9986845 1.106262461 1.381183536 0.576433637 0.103761544 65.7417235 360129.9371 0.014643509 0.051306935 1.75E-05 4.756876047 0.274921074 EAQTLDSQIQET(ph)SI ddPTM_HeLa_CUDC101_4h_R1 1 EAQTLDSQIQETSI 14 0 E7EVA0;P27816;P27816-2;P27816-4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 EAQTLDSQIQET(0.5)S(0.5)I 197.19 8.88E-16 49362000 3264.2 3529.1 2805.5 3137.2 3383.2 3100.3 3399.9 3083.1 3618.4 3314.7 TRUE FALSE FALSE 2881.575424 3637.827388 2957.173816 3265.148576 3133.628076 3041.166943 3531.035282 3434.067642 3469.24802 3294.984017 0.874533961 1.104050086 0.897477439 0.990945194 0.951029826 0.922968648 1.071639578 1.042210713 1.052887663 1 11.68605575 -4.756855913 24.9996091 0.951509417 1.056925182 0.125248659 0.068953057 107.1513003 584413.0439 0.009117359 0.031965697 1.75E-05 4.756855913 0.105415765 GPGPGQGS(ph)PGGGPGPR ddPTM_HeLa_CUDC101_4h_R1 1 GPGPGQGSPGGGPGPR 16 0 H0YDS2;Q8IYL2 H0YDS2 TRMT44 Probable tRNA (uracil-O(2)-)-methyltransferase 1 0 GPGPGQGS(1)PGGGPGPR 80.459 0.015328 8352800 1736.9 1206.4 1474.7 1502.8 1453.5 1511.7 1041.9 1016.9 1219.7 1291 TRUE FALSE FALSE 1533.303215 1243.567754 1554.426743 1564.09068 1346.278201 1482.866841 1082.086432 1132.659786 1169.42345 1283.321075 1.194793139 0.969023091 1.211253188 1.2187836 1.04905797 1.155491693 0.843192287 0.882600472 0.911247756 1 10.32566645 -4.756656573 24.99898828 1.102950413 0.86289628 0.431592566 0.102620001 70.90404946 370590.8775 0.013212838 0.046415557 1.75E-05 4.756656573 -0.240054134 MDGEATS(ph)PLPR ddPTM_HeLa_CUDC101_4h_R1 2 MDGEATSPLPR 11 0 Q86UU1-3;Q86UU1-2;Q86UU1;A0A087WZL0 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 0 MDGEAT(0.212)S(0.788)PLPR;MDGEAT(0.043)S(0.957)PLPR ; 108.98 0.0072848 22851000 7598 6920.8 6779.8 6648.3 7770.4 7490.6 7428.7 6968.9 7499.1 8136.4 TRUE FALSE FALSE 6707.373958 7134.021645 7146.336496 6919.44641 7197.193073 7347.729285 7715.227447 7762.211407 7189.983924 8088.004331 0.829299007 0.882049682 0.883572288 0.855519622 0.88986019 0.908472472 0.953909906 0.959718997 0.888968852 1 12.98156805 -4.756643861 4.894728759 0.905182669 0.958116761 0.222479108 0.043264565 0.347849459 22.16432522 0.009326714 0.033715377 1.75E-05 4.756643861 0.052934092 RSEDES(ph)ETEDEEEKSQEDQEQK ddPTM_HeLa_CUDC101_4h_R1 2 RSEDESETEDEEEKSQEDQEQK 22 2 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 1 0 RS(0.26)EDES(0.682)ET(0.057)EDEEEKS(0.001)QEDQEQK;RS(0.001)EDES(0.921)ET(0.028)EDEEEKS(0.05)QEDQEQK ; 71.524 0.0010093 210880000 1494.59 1514.35 1322.31 1665.31 1562.86 1403.87 1109.13 926 1535.78 1631.84 TRUE FALSE FALSE 1319.396426 1561.005329 1393.798078 1733.22854 1447.570931 1377.093519 1151.909516 1031.412097 1472.474498 1622.133743 0.813370927 0.962316045 0.859237461 1.068486829 0.892386918 0.848939568 0.71011994 0.635836657 0.907739269 1 10.66367706 -4.756627999 1.903449779 0.920608961 0.634186481 0.69443737 0.06790498 0.206751963 1.345378976 0.01203606 0.074065524 1.75E-05 4.756627999 -0.28642248 SS(ph)IDSQASLSGPLSGGAPGAGAR ddPTM_HeLa_CUDC101_4h_R1 1 SSIDSQASLSGPLSGGAPGAGAR 23 0 A6NKD9 A6NKD9 CCDC85C Coiled-coil domain-containing protein 85C 1 0 S(0.1)S(0.771)IDS(0.128)QASLSGPLSGGAPGAGAR 209.74 1.52E-26 14766000 436.47 511.91 286.36 424.04 481.75 405.15 656.83 544.27 406.32 572.57 TRUE FALSE FALSE 385.3076482 527.6813403 301.8414878 441.3341841 446.2122623 397.4224388 682.1641531 606.2274968 389.5713176 569.1643282 0.676970831 0.927115974 0.530323973 0.775407316 0.783977913 0.698256056 1.198536379 1.065118573 0.684461935 1 9.152701435 -4.756573297 24.99997916 0.809777565 1.131827565 0.521992133 0.135857676 88.6457764 455409.9431 0.021805817 0.076658851 1.75E-05 4.756573297 0.32205 MRTT(ph)KVY(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 MRTTKVYK 8 2 O75140;A0A2R8Y7U0;A0A2R8YEW8;A0A2R8Y721;A0A2R8Y5T1;A0A2R8Y6V4;A0A2R8Y842;A0A2R8Y6H3;A0A2R8Y5K9;H0Y770;O75140-9;O75140-4;O75140-8;O75140-1;O75140-5;O75140-6;A0A5F9UWT1;A0A2R8YF97;A0A2R8Y5P2;A0A2R8YF50;A0A2R8Y6H8;A0A2R8Y7U6;A0A2R8Y5E9;O75140-2;A0A2R8YET0;A0A2R8Y6F4;A0A2R8Y6Y2;C9JGS4;A0A2R8YFS1 O75140 DEPDC5 DEP domain-containing protein 5 2 0 MRT(0.02)T(0.98)KVY(1)K 56.258 0.0031679 0 1457.7 1440.5 1147.3 1511.1 1388 1387.2 1201.1 1142.3 1536.1 1346.3 TRUE FALSE FALSE 1286.830616 1484.880098 1209.326508 1572.72919 1285.610005 1360.741471 1247.426829 1272.334815 1472.781308 1338.292148 0.961546862 1.109533595 0.903634166 1.175176281 0.960634797 1.016774606 0.932103526 0.950715295 1.100493125 1 10.38617737 -4.756409722 24.94778302 0.999180049 0.941409392 0.073927849 0.081198135 215.5719495 1069226.649 0.009516689 0.033515928 1.75E-05 4.756409722 -0.057770656 LDSSEMDHS(ph)ENEDYTMSSPLPGKK ddPTM_HeLa_CUDC101_4h_R1 2 LDSSEMDHSENEDYTMSSPLPGKK 24 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 LDS(0.011)S(0.009)EMDHS(0.973)ENEDY(0.001)T(0.006)MSSPLPGKK;LDS(0.009)S(0.029)EMDHS(0.799)ENEDY(0.01)T(0.152)MS(0.001)S(0.001)PLPGKK ; 97.771 7.72E-06 24641000 2788.2 2034.87 2041.69 1882.61 2311.58 2239.95 2339.05 2155.08 2512.8 2176.1 TRUE FALSE FALSE 2461.371423 2097.561933 2152.069937 1959.390973 2141.059349 2197.226686 2429.267942 2400.405596 2409.22132 2163.15646 1.137861023 0.969676476 0.99487484 0.90580178 0.989784783 1.015750236 1.123019988 1.109677289 1.113752687 1 11.0789223 -4.755933025 24.96997277 1.035166082 1.116348674 0.233972055 0.06567466 196.3388128 890317.9726 0.011071799 0.039205307 1.75E-05 4.755933025 0.081182592 SS(ph)PSIICMPK ddPTM_HeLa_CUDC101_4h_R1 1 SSPSIICMPK 10 0 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 1 0 S(0.144)S(0.854)PS(0.003)IICMPK 93.096 0.02383 15086000 1384.7 1333.9 1024 1163.9 1376 1226.9 1451.6 1311.5 1272.5 1340.3 TRUE FALSE FALSE 1222.387565 1374.995878 1079.360537 1211.368873 1274.495221 1203.498927 1507.588698 1460.795859 1220.047011 1332.327836 0.917482569 1.032025182 0.810131342 0.909212313 0.956592805 0.903305398 1.131544848 1.096423732 0.915725828 1 10.3797334 -4.755848553 24.99940915 0.947436587 1.113984358 0.597119782 0.058977071 75.18092739 336160.6905 0.008462854 0.029971475 1.75E-05 4.755848553 0.16654777 S(ph)RDATPPVSPINMEDQER ddPTM_HeLa_CUDC101_4h_R1 2 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 1 0 S(0.871)RDAT(0.129)PPVSPINMEDQER;S(0.568)RDAT(0.428)PPVS(0.005)PINMEDQER ; 68.625 0.011445 26776000 1531.62 1516.48 1047.24 1312.6 1477.39 1429.64 1837.23 1637.42 1545.75 1806.85 TRUE FALSE FALSE 1352.085825 1563.200951 1103.856962 1366.133502 1368.405883 1402.371999 1908.092577 1823.817274 1482.033531 1796.102776 0.752788673 0.870329344 0.61458452 0.760609872 0.761875045 0.780786054 1.062351555 1.015430352 0.825138489 1 10.81065419 -4.75556743 24.99918409 0.837895523 1.038891034 0.443837503 0.10035838 139.9589479 595841.0718 0.018252864 0.064813016 1.76E-05 4.75556743 0.200995511 RADLNQGIGEPQSPS(ph)RR ddPTM_HeLa_CUDC101_4h_R1 1 RADLNQGIGEPQSPSRR 17 2 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 RADLNQGIGEPQS(0.294)PS(0.706)RR 80.994 0.0096458 7940800 843.78 609.41 704.53 745.5 740.37 790.93 457.83 480.72 709.92 675.25 TRUE FALSE FALSE 744.8733875 628.1851998 742.6190229 775.9047123 685.7543801 775.844328 475.4886565 535.4432217 680.6567971 671.233583 1.109708165 0.935866762 1.106349625 1.155938457 1.021633002 1.155848497 0.708380314 0.797700287 1.014038651 1 9.390671088 -4.755497132 24.99999983 1.0593115 0.753040189 0.755180566 0.070443909 49.815611 209575.8806 0.009779512 0.034742435 1.76E-05 4.755497132 -0.306271311 PLLSQEDS(ph)EEEENELEAINRK ddPTM_HeLa_CUDC101_4h_R1 1 PLLSQEDSEEEENELEAINRK 21 1 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 0 PLLS(0.077)QEDS(0.923)EEEENELEAINRK 114.75 6.34E-06 44449000 1815.2 1510.5 1377.2 1733.1 1704.4 1564.3 2052.8 1943.2 1665.6 1657.3 TRUE FALSE FALSE 1602.425008 1557.036715 1451.655598 1803.783309 1578.669808 1534.463584 2131.977184 2164.406033 1596.943263 1647.442306 0.972674431 0.945123668 0.881157169 1.094899228 0.958254988 0.931421743 1.294113412 1.313797773 0.969347004 1 10.68601223 -4.755228648 24.93878562 0.978931161 1.30395579 0.866145052 0.052540072 33.70322588 135328.9268 0.00698059 0.024849799 1.76E-05 4.755228648 0.325024629 EGPYS(ph)ISVLYGDEEVPR ddPTM_HeLa_CUDC101_4h_R1 2 EGPYSISVLYGDEEVPR 17 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 1 0 EGPYS(0.957)IS(0.043)VLYGDEEVPR;EGPYS(0.965)IS(0.035)VLYGDEEVPR ; 223.29 9.12E-33 12624200 1404.39 1484.34 1407.64 1456.45 1777.89 1484.67 1572.24 1384.61 1500.02 1773.75 TRUE FALSE FALSE 1239.769533 1530.070756 1483.741276 1515.850326 1646.738597 1456.352393 1632.881823 1542.228406 1438.188541 1763.199656 0.703136215 0.86778077 0.841504971 0.859715643 0.933949023 0.825971346 0.926090144 0.87467599 0.815669703 1 10.78398013 -4.754430826 24.95886896 0.859752992 0.900383052 0.052857349 0.073828704 648.246235 2308469.671 0.015088856 0.054106085 1.76E-05 4.754430826 0.040630061 RSTQY(ph)KFRLT(ph)AS(ph)NT(ph)EGK ddPTM_HeLa_CUDC101_4h_R1 1 RSTQYKFRLTASNTEGK 17 3 Q53EP0-2;Q53EP0 Q53EP0-2 FNDC3B Fibronectin type III domain-containing protein 3B 4 0 RS(0.053)T(0.21)QY(0.737)KFRLT(1)AS(1)NT(1)EGK 55.755 0.022638 7702800 1774.4 1416.1 1460.6 1310.4 1765 1709.1 1215.2 1299 1628.1 1554.3 TRUE FALSE FALSE 1566.407522 1459.728363 1539.564454 1363.843776 1634.799466 1676.501765 1262.070671 1446.872909 1560.989029 1545.054954 1.01381994 0.944774397 0.996446404 0.882715383 1.058084997 1.085075816 0.816845166 0.936454011 1.01031295 1 10.59344244 -4.754420902 24.99999978 1.000572699 0.876649594 0.406423237 0.059070409 111.905179 398598.263 0.007744117 0.027764915 1.76E-05 4.754420902 -0.123923104 NSS(ph)SESAIVPK ddPTM_HeLa_CUDC101_4h_R1 1 NSSSESAIVPK 11 0 Q5THJ4-2;Q5THJ4;H3BLS7;A0A2R8YD87 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 NS(0.003)S(0.904)S(0.084)ES(0.009)AIVPK 120.29 0.00418 33496000 4571.6 4133.9 4421.3 4320.1 5022.6 4164.1 3227.3 2880 4123.4 4041.5 TRUE FALSE FALSE 4035.723978 4261.260559 4660.328852 4496.292351 4652.092804 4084.67673 3351.778042 3207.847559 3953.431707 4017.460978 1.004545906 1.06068499 1.160018449 1.11918756 1.157968386 1.016730904 0.834302576 0.798476345 0.984062254 1 11.9720683 -4.754369233 4.382615145 1.038584482 0.808557602 0.691040054 0.064635875 0.102281093 4.637808932 0.010796979 0.040240959 1.76E-05 4.754369233 -0.230026881 (ac)SGAGVAAGTRPPS(ph)SPTPGSR ddPTM_HeLa_CUDC101_4h_R1 1 SGAGVAAGTRPPSSPTPGSR 20 1 F8WCQ0;F8WB40;F8WEI8;C9JC78;B8ZZB0;E9PG54;F5GZA4;E7ESC5;Q96AQ1-2;Q96LY2-2;Q96AQ1;Q96LY2 F8WCQ0 CCDC74B;CCDC74A Coiled-coil domain-containing protein 74A;Coiled-coil domain-containing protein 74B 1 0 S(0.001)GAGVAAGT(0.01)RPPS(0.946)S(0.038)PT(0.003)PGS(0.002)R 50.897 0.0011298 4669300 1315.2 936.34 850.06 1214.5 753.07 1002.6 902.16 861.63 869.02 798.88 TRUE FALSE FALSE 1161.03425 965.1875256 896.0168149 1264.03256 697.5175264 983.4770754 936.9566134 959.7144764 833.1986278 794.1282262 1.462023652 1.215405137 1.128302439 1.5917235 0.878343702 1.238436115 1.179855573 1.208513241 1.049199109 1 9.633228165 -4.754126688 22.35051322 1.219407734 1.194184481 0 0.200001458 594.5794637 1817071.187 0.030382147 0.108387539 1.76E-05 4.754126688 -0.025223253 RVS(ph)VELTNSLFK ddPTM_HeLa_CUDC101_4h_R1 1 RVSVELTNSLFK 12 1 P14923 P14923 JUP Junction plakoglobin 1 0 RVS(1)VELTNSLFK 96.489 0.0077534 7785500 7023.1 6898.6 5226.8 6056.8 6216.3 6339.7 4520.6 4178.9 5196.9 5506 TRUE FALSE FALSE 6199.862864 7111.137689 5509.376618 6303.822484 5757.735934 6218.780785 4694.961056 4654.609084 4982.681582 5473.250067 1.132757098 1.299253205 1.006600567 1.151751228 1.051977502 1.136213531 0.857801306 0.850428726 0.910369802 1 12.41818206 -4.753234356 24.84592534 1.086367829 0.854114856 0.462113088 0.100119498 100.8440128 305361.2956 0.012597277 0.045529551 1.77E-05 4.753234356 -0.232252973 RDS(ph)PLQGSGQQNSQAGQR ddPTM_HeLa_CUDC101_4h_R1 4 RDSPLQGSGQQNSQAGQR 18 1 C9J840;E7EX83;A0A0D9SG62;H7C0P6;E7ENQ1;G3XAA2;H7C360;G5E948;A0A0D9SEY1;O95819-4;O95819-2;O95819;O95819-5;O95819-3;E7EN19;O95819-6 C9J840 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 0 RDS(1)PLQGSGQQNSQAGQR;RDS(1)PLQGSGQQNSQAGQR;RDS(1)PLQGSGQQNSQAGQR;RDS(1)PLQGSGQQNSQAGQR ;;; 140.84 3.98E-05 45851400 3855.62 3745.49 3773.57 3566.5 3715.44 3504.56 3044.85 2711.64 3456.15 3606.28 TRUE FALSE FALSE 3403.670068 3860.884107 3977.580609 3711.957286 3441.359393 3437.716357 3162.290884 3020.322137 3313.686034 3584.829686 0.94946493 1.077006286 1.109559158 1.035462661 0.959978491 0.958962254 0.882131415 0.842528767 0.924363589 1 11.80768886 -4.753112258 1.561321283 0.997701353 0.83512314 0.536697782 0.053877056 0.349941878 1.39569825 0.008615191 0.065499803 1.77E-05 4.753112258 -0.162578213 DVVLST(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 2 DVVLSTSPK 9 0 Q9P275;A0A075B784 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36;Ubiquitin carboxyl-terminal hydrolase 1 0 DVVLS(0.244)T(0.663)S(0.093)PK;DVVLS(0.02)T(0.877)S(0.103)PK ; 128.81 0.017258 76585000 21694.5 19969.7 18013 18696.6 18093.5 18535.6 15503.5 13638.8 20036.5 19673.2 TRUE FALSE FALSE 19151.5036 20584.94279 18986.83727 19459.12816 16758.77855 18182.06431 16101.47519 15191.38586 19210.58699 19556.18293 0.979306834 1.05260535 0.970886667 0.995037131 0.856955502 0.929734825 0.823344476 0.77680731 0.982328047 1 14.25533719 -4.752864889 0.680225991 0.996119606 0.715361914 0.807579956 0.036892338 0.534723875 0.249465648 0.006149563 0.10142802 1.77E-05 4.752864889 -0.280757693 AEQPSPPNS(ph)DS(ph)GQDAHPDPDANPDAAR ddPTM_HeLa_CUDC101_4h_R1 1 AEQPSPPNSDSGQDAHPDPDANPDAAR 27 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 2 0 AEQPS(0.56)PPNS(0.593)DS(0.847)GQDAHPDPDANPDAAR 73.865 0.00049411 19121000 2060.2 1859.3 1772.5 1488.4 2250 1786.8 2005.1 1854.5 1777.4 1824.1 TRUE FALSE FALSE 1818.706479 1916.582829 1868.326712 1549.103385 2084.021983 1752.719767 2082.437379 2065.608784 1704.13482 1813.250172 1.003009131 1.056987535 1.030374485 0.854324135 1.149329538 0.966617731 1.148455635 1.139174735 0.939823333 1 10.82436227 -4.752592025 24.99033305 1.005680005 1.143815267 0.383577064 0.07261646 130.6953853 369154.9287 0.008588286 0.031195503 1.77E-05 4.752592025 0.138135261 (ac)ASCAS(ph)IDIEDATQHLR ddPTM_HeLa_CUDC101_4h_R1 1 ASCASIDIEDATQHLR 16 0 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 AS(0.001)CAS(0.999)IDIEDATQHLR 95.067 0.00039705 5690100 191.19 65.659 221 123.88 159.62 192.53 66.128 67.335 0 166.58 TRUE FALSE FALSE 168.778998 67.68187596 232.9479285 128.9323619 147.8451506 188.857811 68.67857911 75.00014422 0 165.5891748 1.019263477 0.408733699 1.406782351 0.778627963 0.892843091 1.140520274 0.414752832 0.45292903 0 1 7.371464551 -4.751977863 24.99497148 0.977075926 0.433840602 0.050081796 0.392245184 122.0498152 322418.0917 0.030164459 0.109889637 1.77E-05 4.751977863 -0.543235324 NSTGGTS(ph)VGWDSPPAS(ph)PLQR ddPTM_HeLa_CUDC101_4h_R1 1 NSTGGTSVGWDSPPASPLQR 20 0 Q13424-2;Q13424 Q13424-2 SNTA1 Alpha-1-syntrophin 2 0 NS(0.002)T(0.011)GGT(0.082)S(0.645)VGWDS(0.261)PPAS(1)PLQR 124.73 0.00020823 12095000 983.31 735.54 1078.1 921.84 919.87 909.87 1080.7 1017.9 1166.2 1026.5 TRUE FALSE FALSE 868.0478924 758.2011156 1136.385347 959.4366197 852.0130227 892.5157457 1122.382961 1133.773622 1118.128742 1020.394332 0.850698465 0.743047165 1.113672735 0.940260632 0.83498408 0.874677286 1.099950211 1.111113209 1.09578102 1 9.994911075 -4.751706829 24.47661894 0.919008263 1.105531886 0.28042677 0.109941048 129.9660309 326845.1359 0.014002235 0.051037283 1.77E-05 4.751706829 0.186523623 TPTSS(ph)PASSPLVAK ddPTM_HeLa_CUDC101_4h_R1 1 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 T(0.01)PT(0.003)S(0.121)S(0.853)PAS(0.011)S(0.002)PLVAK 170.95 4.63E-07 32973000 2017.7 1864.6 1579.4 1701.5 2208.1 2032.8 1140.7 1092.4 1557.8 1783.6 TRUE FALSE FALSE 1781.188265 1922.046116 1664.787141 1770.894525 2045.212862 1994.027727 1184.697181 1216.7544 1493.586825 1772.991068 1.004623372 1.084069825 0.938970969 0.99881751 1.153538165 1.124668794 0.668191286 0.686272155 0.8424108 1 10.79196955 -4.751579267 24.99940366 1.020693088 0.677231503 0.720376671 0.085009968 60.65707707 153787.1072 0.009226995 0.033688325 1.77E-05 4.751579267 -0.343461585 SQSES(ph)SDEVTELDLSHGKK ddPTM_HeLa_CUDC101_4h_R1 1 SQSESSDEVTELDLSHGKK 19 1 Q86YS7;Q86YS7-3;Q86YS7-2;Q86YS7-4;Q86YS7-5 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 S(0.117)QS(0.075)ES(0.5)S(0.308)DEVTELDLSHGKK 113.7 0.00029966 29664000 6678.2 5985.7 6369.6 6848.5 6835.7 6611.8 5437.7 5229.8 6760.3 6313.9 TRUE FALSE FALSE 5895.391519 6170.112322 6713.959843 7127.811432 6331.44403 6485.690931 5647.433911 5825.139292 6481.637573 6276.344642 0.939303345 0.983074174 1.069724533 1.135662848 1.008778898 1.033354811 0.899796654 0.92811017 1.032708996 1 12.61570886 -4.751546581 24.97687889 0.99636583 0.91395338 0.294465894 0.056102666 246.9318678 623428.8523 0.009107036 0.033246114 1.77E-05 4.751546581 -0.08241245 RPGHPAQPLPLPQTAS(ph)SPQPQQK ddPTM_HeLa_CUDC101_4h_R1 1 RPGHPAQPLPLPQTASSPQPQQK 23 1 O60346 O60346 PHLPP1 PH domain leucine-rich repeat-containing protein phosphatase 1 1 0 RPGHPAQPLPLPQT(0.061)AS(0.47)S(0.47)PQPQQK 66.874 0.0054925 12636000 798.98 491.59 762.6 600.02 930.18 684.53 835.79 766.71 755.07 758.77 TRUE FALSE FALSE 705.3247756 506.7353052 803.8284627 624.4914091 861.5624746 671.4737308 868.0267003 853.9891673 723.945695 754.2568023 0.935125508 0.671833921 1.065722524 0.827955952 1.142266761 0.890245509 1.150837086 1.132226007 0.95981328 1 9.558911992 -4.751421449 24.8862256 0.952394863 1.141531667 0.303298314 0.122372074 179.9966975 447131.986 0.015782364 0.057645346 1.77E-05 4.751421449 0.189136804 SGGIVIS(ph)PFR ddPTM_HeLa_CUDC101_4h_R1 2 SGGIVISPFR 10 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 SGGIVIS(1)PFR;SGGIVIS(1)PFR ; 105.2 0.010607 58402000 8358.8 6593.7 5382.9 6081.1 5695.8 6418.8 4930.4 4744.5 6298.3 4631.9 TRUE FALSE FALSE 7378.994135 6796.844082 5673.915856 6329.113543 5275.632182 6296.372084 5120.56718 5284.594702 6038.681408 4604.349253 1.602613905 1.476179088 1.232294847 1.374594583 1.145793225 1.367483598 1.112115285 1.147739759 1.311516802 1 12.16878155 -4.751120268 24.51289245 1.301159786 1.129927415 0.173499919 0.158624739 342.0703374 812560.4206 0.032069543 0.117228437 1.77E-05 4.751120268 -0.171232372 TNSSSS(ph)SPVVLK ddPTM_HeLa_CUDC101_4h_R1 1 TNSSSSSPVVLK 12 0 E9PMC9;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7;Q7Z589-2 E9PMC9 C11orf30;EMSY Protein EMSY 1 0 T(0.004)NS(0.003)S(0.061)S(0.161)S(0.443)S(0.328)PVVLK 183.06 1.38E-10 62927000 2147.2 1952.1 1970 2270.5 2307.9 2479.4 2619 2550.5 2151.5 2152.1 TRUE FALSE FALSE 1895.508471 2012.241887 2076.504159 2363.100804 2137.650815 2432.109576 2720.015707 2840.838611 2062.814259 2139.299213 0.886041774 0.940607968 0.970646904 1.104614441 0.999229468 1.136872094 1.27145174 1.327929535 0.964247659 1 11.06292256 -4.751108924 0.705666538 0.946222013 1.453987215 0.885146469 0.047125331 0.459001805 0.234002235 0.009984743 0.161880274 1.77E-05 4.751108924 0.507765201 SRS(ph)FSSSAEEHS ddPTM_HeLa_CUDC101_4h_R1 1 SRSFSSSAEEHS 12 1 Q96EQ0 Q96EQ0 SGTB Small glutamine-rich tetratricopeptide repeat-containing protein beta 1 0 S(0.055)RS(0.929)FS(0.005)S(0.005)S(0.005)AEEHS 106.79 0.032792 7486400 1612.2 1086.9 925.5 1027.5 1843 1830.8 2068.9 2359.5 1403.9 1337.4 TRUE FALSE FALSE 1423.22036 1120.386101 975.5353295 1069.405891 1707.045562 1795.88054 2148.698166 2628.095943 1346.030648 1329.445085 1.070537155 0.842747183 0.733791369 0.804400199 1.284028638 1.350849734 1.616236872 1.976836781 1.012475553 1 10.37660847 -4.75093964 1.13627476 0.984353446 2.055456314 0.869127106 0.134897463 0.244084098 0.424195319 0.023426682 0.252206154 1.77E-05 4.75093964 1.071102868 LAEAPSPAPTPSPTPVEDLGPQT(ph)STSPGRLSPDFAEELR ddPTM_HeLa_CUDC101_4h_R1 1 LAEAPSPAPTPSPTPVEDLGPQTSTSPGRLSPDFAEELR 39 1 A0A0G2JMS7;A0A0G2JNZ2;A0A669KB89;Q14160-2;Q14160;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 0 LAEAPSPAPT(0.002)PS(0.026)PT(0.164)PVEDLGPQT(0.184)S(0.164)T(0.164)S(0.147)PGRLS(0.147)PDFAEELR 52.586 0.003389 9285800 2291.4 2326 1562.4 1965.2 2235.1 2020.2 1527.7 1390.8 2160.4 1886 TRUE FALSE FALSE 2022.805566 2397.661303 1646.86807 2045.34935 2070.221126 1981.668051 1586.623901 1549.12305 2071.347398 1874.781988 1.078955088 1.278901397 0.878431775 1.090979838 1.104246328 1.057012529 0.846297815 0.826295036 1.104847076 1 10.87250712 -4.750885635 6.801861098 1.053748775 0.834054882 0.48768587 0.095738417 0.091036579 19.16919775 0.012783868 0.044912189 1.77E-05 4.750885635 -0.219693893 QKEENNTDLPYLEESTLTTAALS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 QKEENNTDLPYLEESTLTTAALSPSK 26 1 A0A087WU78;A0A087WWC4;Q6T4R5-4;Q6T4R5-3;Q6T4R5-2;Q6T4R5 A0A087WU78 NHS Nance-Horan syndrome protein 1 0 QKEENNTDLPYLEES(0.001)T(0.001)LT(0.004)T(0.004)AALS(0.935)PS(0.054)K 99.885 7.75E-07 0 1388.8 1398.8 1016.1 1229.9 1376.8 1312.7 973.89 885.6 1534.8 1342.9 TRUE FALSE FALSE 1226.006969 1441.89537 1071.03344 1280.060638 1275.236207 1287.662435 1011.453264 986.4131243 1471.534894 1334.912371 0.918417565 1.080142338 0.802324904 0.958909862 0.955295819 0.964604466 0.757692629 0.738934739 1.102345687 1 10.38252933 -4.750341432 7.512365211 0.95743708 0.74679417 0.552939568 0.079789282 0.064280483 19.97302943 0.008807322 0.030870221 1.78E-05 4.750341432 -0.21064291 NKDGETPGQILGWGPPWDS(ph)AEEEEEDDASKER ddPTM_HeLa_CUDC101_4h_R1 2 NKDGETPGQILGWGPPWDSAEEEEEDDASKER 32 2 A0A140TA04;Q5STV6;A0A0A0MRT5;Q9UBC1-2;Q9UBC1-3;Q9UBC1 A0A140TA04 NFKBIL1 NF-kappa-B inhibitor-like protein 1 1 0 NKDGETPGQILGWGPPWDS(0.988)AEEEEEDDAS(0.012)KER;NKDGETPGQILGWGPPWDS(0.985)AEEEEEDDAS(0.015)KER ; 75.939 2.52E-06 20252000 4174.7 4032.1 3521.3 3485.4 3770.8 3669.5 4065.4 3759.5 4251.3 3879 TRUE FALSE FALSE 3685.347994 4156.324222 3711.672129 3627.549677 3492.635596 3599.510401 4222.20384 4187.466284 4076.059615 3855.927535 0.955761736 1.077905169 0.962588663 0.940772264 0.905783515 0.933500531 1.094990453 1.085981582 1.057089268 1 11.91286222 -4.75027018 24.98781619 0.974150202 1.090486094 0.427617098 0.051249461 133.2275221 298051.5073 0.006441889 0.023654923 1.78E-05 4.75027018 0.116335893 KDAPTS(ph)PASVASSSSTPSSK ddPTM_HeLa_CUDC101_4h_R1 2 KDAPTSPASVASSSSTPSSK 20 1 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 KDAPT(0.269)S(0.726)PAS(0.005)VASSSSTPSSK;KDAPT(0.481)S(0.516)PAS(0.003)VASSSSTPSSK ; 77.939 0.0025858 21418000 8132.6 6350.7 7453.2 7258.6 7813.7 7347.9 6196.9 5643.6 6679.6 7448 TRUE FALSE FALSE 7179.308956 6546.35754 7856.142537 7554.637082 7237.298918 7207.75105 6435.916509 6286.044612 6404.264061 7403.698965 0.969692176 0.884200934 1.061110477 1.020386852 0.977524742 0.973533781 0.869283927 0.849041086 0.865008706 1 12.85403052 -4.749875884 3.59531191 0.985372186 0.852415946 0.351164648 0.0567686 0.113875101 3.07032926 0.00588327 0.023558103 1.78E-05 4.749875884 -0.132956239 TEDGGEFEEGAS(ph)ENNAK ddPTM_HeLa_CUDC101_4h_R1 2 TEDGGEFEEGASENNAK 17 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 TEDGGEFEEGAS(1)ENNAK;TEDGGEFEEGAS(1)ENNAK ; 229.92 1.07E-33 18173000 2024.23 1777.13 1442.81 1866.26 1725.44 1766.12 2195.19 2031.25 2042.99 2108.47 TRUE FALSE FALSE 1786.952828 1831.881269 1520.812673 1942.374149 1598.157729 1732.434204 2279.859214 2262.479289 1958.777087 2095.928727 0.852582822 0.874018876 0.725603239 0.926736737 0.762505761 0.826571143 1.087756079 1.079463848 0.934562832 1 11.03337394 -4.749745785 24.92338175 0.892529692 1.083610103 0.519610901 0.080981954 167.7650515 357562.1946 0.013479892 0.049588024 1.78E-05 4.749745785 0.191080412 MLVS(ph)LKMSYK ddPTM_HeLa_CUDC101_4h_R1 1 MLVSLKMSYK 10 1 G3V2F2;G3V3R3;G3V3Y5;G3V3H8;G3V277;G3V2Y7;G3V456;G3V5U1;G3V227;G3V3P2;G3V423;G3V3X0;G3V3S7;G3V5W1;G3V4N0;G3V4N8;G3V4C7;G3V2C0;G3V339;G3V313;G3V4S4;P23381-2;P23381 G3V2F2 WARS "Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS" 1 0 MLVS(1)LKMSYK 78.556 0.028592 26720000 2642 2812.5 2378.4 2315.7 2578.2 2444.9 2838.8 2508.5 3211.4 2864.1 TRUE FALSE FALSE 2332.308765 2899.149791 2506.983498 2410.144255 2388.011322 2398.267606 2948.293467 2794.0575 3079.024733 2847.064206 0.819197811 1.018294489 0.880550391 0.846536671 0.838762722 0.842365129 1.035555665 0.981381977 1.081473585 1 11.47525931 -4.749618772 24.97298776 0.903736304 1.008468853 0.144130886 0.086251006 264.899874 559633.9358 0.01131143 0.041636254 1.78E-05 4.749618772 0.10473255 EHSLQVS(ph)PSLEK ddPTM_HeLa_CUDC101_4h_R1 4 EHSLQVSPSLEK 12 0 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 0 EHSLQVS(0.997)PS(0.003)LEK;EHSLQVS(0.995)PS(0.005)LEK;EHSLQVS(0.975)PS(0.025)LEK;EHSLQVS(0.946)PS(0.054)LEK ;;; 90.706 0.013197 304256000 29490.2 25015.8 24168.5 23832.4 27044.4 24187 20614.1 10042.7 27718.4 27302.8 TRUE FALSE FALSE 26033.40346 25786.50715 25475.12222 24804.38828 25049.38849 23725.67327 21409.19274 11185.92037 26575.83582 27140.40173 0.959212163 0.95011516 0.938642046 0.91392856 0.922955701 0.874182833 0.788831092 0.41215014 0.979198321 1 14.72815446 -4.074379286 1.128378065 0.967844464 1.86E-25 0.96840073 0.029140249 0.315376052 0.246115063 0.005190532 0.397888998 8.43E-05 4.074379286 -0.967844464 down S(ph)PETIAAEEDTDSKFK ddPTM_HeLa_CUDC101_4h_R1 2 SPETIAAEEDTDSKFK 16 1 Q9NRE2;Q9NRE2-2;S4R3C8 Q9NRE2 TSHZ2 Teashirt homolog 2 1 0 S(0.965)PET(0.035)IAAEEDTDSKFK;S(0.985)PET(0.015)IAAEEDTDSKFK ; 94.973 0.0034648 23175000 4987.3 3812 3784.5 3843.8 4938.5 4236.2 3699.2 3420.4 4438.2 3916.5 TRUE FALSE FALSE 4402.696254 3929.443202 3989.101517 4000.566778 4574.196694 4155.401543 3841.879383 3809.76451 4255.255517 3893.204484 1.130866943 1.009308198 1.024631903 1.027576844 1.174918172 1.067347364 0.986816747 0.978567791 1.092995638 1 11.92674241 -4.749384739 8.838123737 1.062572195 0.982384429 0.284400568 0.05261498 0.195042614 103.8828203 0.008657782 0.030425135 1.78E-05 4.749384739 -0.080187766 VLTLSERPLDFLDLERPPT(ph)TPQNEEIR ddPTM_HeLa_CUDC101_4h_R1 1 VLTLSERPLDFLDLERPPTTPQNEEIR 27 2 Q9GZY8-5;C9JHF5;A0A0A0MS29;Q9GZY8-4;Q9GZY8-3;Q9GZY8-2;Q9GZY8 Q9GZY8-5 MFF Mitochondrial fission factor 1 0 VLTLSERPLDFLDLERPPT(0.72)T(0.28)PQNEEIR 58.361 0.011484 21331000 522.41 358.48 312.71 376.77 532.03 565.67 199.16 295.19 284.87 432.95 TRUE FALSE FALSE 461.1738917 369.5243439 329.6160485 392.1363091 492.7832069 554.8807872 206.8416679 328.7932364 273.127538 430.3747941 1.071563433 0.858610562 0.765881397 0.911150733 1.145009451 1.289296666 0.48060823 0.763969547 0.634627171 1 8.749449776 -4.749319506 24.99993397 1.015690015 0.622288835 0.292907114 0.194503204 137.0018047 282591.2927 0.021493051 0.079212356 1.78E-05 4.749319506 -0.39340118 RHS(ph)VTLPSSK ddPTM_HeLa_CUDC101_4h_R1 2 RHSVTLPSSK 10 1 G3V2D5;G3V515;G3V2P5;Q07352 G3V2D5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" 1 0 RHS(0.991)VT(0.009)LPSSK;RHS(0.989)VT(0.011)LPSSK ; 84.734 0.019425 70260000 7563.7 6499.8 6449.5 7423 10605.5 11720.8 16408.9 17606.2 6135.4 7472.6 TRUE FALSE FALSE 6677.094552 6700.051134 6798.179479 7725.742025 9823.153394 11497.24527 17041.79677 19610.41864 5882.496215 7428.152643 0.898890326 0.901980809 0.915191139 1.040062368 1.322422124 1.547793351 2.294217363 2.640012879 0.791919135 1 12.85878775 -4.748376697 1.002657417 0.942893975 2.965397243 0.982615203 0.080382686 0.073335219 0.091472545 0.010750121 0.132093206 1.78E-05 4.748376697 2.022503268 up LTPPS(ph)PVRSEPQPAVPQELEMPVLK ddPTM_HeLa_CUDC101_4h_R1 1 LTPPSPVRSEPQPAVPQELEMPVLK 25 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 0 LT(0.003)PPS(0.958)PVRS(0.038)EPQPAVPQELEMPVLK 84.689 2.07E-05 15160000 1142.5 911.46 1021.2 918.35 1606.2 1021.1 1465.3 1283.5 1117.6 1389.4 TRUE FALSE FALSE 1008.577882 939.5410023 1076.409161 955.8042824 1487.713826 1001.624219 1521.817112 1429.608452 1071.532055 1381.135787 0.730252515 0.68026693 0.779365194 0.692042225 1.077166952 0.725217772 1.101859155 1.035096234 0.775833966 1 10.43163945 -4.747585127 24.88590296 0.843492209 1.068477825 0.372078849 0.128999557 224.5470957 403338.3082 0.020275003 0.075053654 1.79E-05 4.747585127 0.224985616 SDLPGSDKDTEESGLHLSPT(ph)AAEAK ddPTM_HeLa_CUDC101_4h_R1 1 SDLPGSDKDTEESGLHLSPTAAEAK 25 1 Q15599-2 Q15599-2 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 0 SDLPGS(0.003)DKDT(0.01)EES(0.007)GLHLS(0.429)PT(0.551)AAEAK 53.444 0.022787 41202000 1317.8 985.15 995 1152.1 1470.7 1348.4 855.96 777.6 1267.8 1286.1 TRUE FALSE FALSE 1163.329482 1015.501304 1048.79271 1199.087618 1362.209391 1322.681517 888.9746639 866.1188408 1215.540747 1278.45022 0.909952897 0.794322132 0.820362571 0.937922806 1.065516177 1.03459759 0.695353366 0.677475609 0.950792396 1 10.32018027 -4.747367663 24.52734951 0.945632846 0.686414185 0.609258298 0.080838757 102.615351 178856.9813 0.012629822 0.046753821 1.79E-05 4.747367663 -0.25921866 GSGIFDEST(ph)PVQTR ddPTM_HeLa_CUDC101_4h_R1 2 GSGIFDESTPVQTR 14 0 A6NGP5;Q9H910;Q9H910-3;H3BU16;Q9H910-2;H3BMV3;H3BMT0;H3BTV5 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 0 GSGIFDES(0.025)T(0.975)PVQTR;GSGIFDES(0.067)T(0.933)PVQTR ; 266.85 4.37E-70 59623000 8682.4 7623.4 5998.7 7056.2 8168.1 7374 6327.9 2973.4 7454.7 7901.9 TRUE FALSE FALSE 7664.662234 7858.267918 6323.007867 7343.982335 7565.555536 7233.353236 6571.969223 3311.879837 7147.414111 7854.899147 0.975781113 1.000428875 0.804976327 0.93495565 0.96316393 0.920871561 0.836671369 0.421632382 0.909930729 1 12.93937704 -4.072570091 1.53079517 0.969250273 2.61E-12 0.870553394 0.058909195 0.420703317 0.632440216 0.008649103 0.700248878 8.46E-05 4.072570091 -0.969250273 down KLS(ph)PIIEDSR ddPTM_HeLa_CUDC101_4h_R1 1 KLSPIIEDSR 10 1 O60566-3;O60566 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 KLS(1)PIIEDSR 119.17 0.010325 84680000 3150 3304.5 2947.6 2909.6 3525.8 3209.7 2638 2472 3097.2 3125.3 TRUE FALSE FALSE 2780.761775 3406.307728 3106.956172 3028.266064 3265.708758 3148.48032 2739.748544 2753.402488 2969.532105 3106.710577 0.895082341 1.096435488 1.000079053 0.974749977 1.051178949 1.013445006 0.881880843 0.886275828 0.955844464 1 11.60117213 -4.746917312 24.44267143 0.975742696 0.884078236 0.360786514 0.054563907 201.8527681 339738.3305 0.009066168 0.033588862 1.79E-05 4.746917312 -0.09166446 AATAARPPAPPPAPQPPS(ph)PT(ph)PSPPRPTLAR ddPTM_HeLa_CUDC101_4h_R1 2 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36-3;Q96B36;H9KV91 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 2 0 AATAARPPAPPPAPQPPS(0.826)PT(0.684)PS(0.465)PPRPT(0.025)LAR;AAT(0.001)AARPPAPPPAPQPPS(0.931)PT(0.532)PS(0.531)PPRPT(0.005)LAR ; 70.771 6.26E-05 242622000 2392 2119.3 1916.02 2060.25 1962.08 2005.08 2276.5 2049.84 2145.7 2164.57 TRUE FALSE FALSE 2111.613386 2184.593121 2019.605837 2144.2759 1817.341267 1966.83644 2364.305368 2283.1855 2057.253338 2151.695041 0.981372056 1.015289378 0.938611559 0.996551955 0.844609126 0.914086988 1.098810622 1.061110174 0.95610823 1 11.0712579 -4.746804738 24.98227901 0.974771535 1.079960452 0.457912089 0.050781426 186.6177983 318563.0907 0.00740459 0.027456055 1.79E-05 4.746804738 0.105188917 IILDLISES(ph)PIK ddPTM_HeLa_CUDC101_4h_R1 2 IILDLISESPIK 12 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 IILDLIS(0.001)ES(0.999)PIK;IILDLISES(1)PIK ; 195.94 3.94E-16 900730000 1134.02 952.42 975.21 920.87 1001.5 1103.29 652.38 643.3 865.63 891.24 TRUE FALSE FALSE 1001.091895 981.7629313 1027.932802 958.4270589 927.6213403 1082.246581 677.5425151 716.5306717 829.948365 885.9388648 1.129978528 1.108161037 1.160275097 1.081820763 1.04704893 1.221581561 0.764773442 0.80878117 0.936800944 1 9.791063337 -4.746797363 24.99997217 1.082028241 0.786777093 0.709163886 0.076545058 88.96521071 151897.7251 0.009836467 0.036481572 1.79E-05 4.746797363 -0.295251148 ST(ph)DSSSVSGSLQQETK ddPTM_HeLa_CUDC101_4h_R1 1 STDSSSVSGSLQQETK 16 0 Q9H8G2;A0A3B3ISJ3 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 0 S(0.024)T(0.939)DS(0.024)S(0.013)SVSGSLQQETK 265.43 1.18E-69 37494000 3737.8 3164.6 3463.7 3221.9 4038.4 3469.3 2468.2 2199.7 3292.2 3457.3 TRUE FALSE FALSE 3299.66075 3262.097575 3650.958099 3353.303008 3740.495278 3403.128883 2563.399301 2450.104957 3156.494123 3436.735826 0.960114748 0.949184849 1.062333064 0.975723238 1.088386035 0.990221261 0.745881974 0.712916291 0.918457013 1 11.74682324 -4.746762758 5.630447966 0.992362655 0.724111755 0.828626743 0.048024911 0.040906268 4.043856627 0.006030833 0.021759989 1.79E-05 4.746762758 -0.2682509 AQLYLPST(ph)SPPHEGLDGFAQELSR ddPTM_HeLa_CUDC101_4h_R1 1 AQLYLPSTSPPHEGLDGFAQELSR 24 0 I3L465;I3L1Z8;I3L1A6;Q8N137-4;Q8N137-5;Q8N137;Q8N137-3;Q8N137-2 I3L465 CNTROB Centrobin 1 0 AQLY(0.005)LPS(0.091)T(0.452)S(0.452)PPHEGLDGFAQELSR 70.345 0.0010836 9536100 1413.4 1341.6 1140.7 1098.7 1354.2 1246.3 1471.9 1390.1 1272.2 1429.3 TRUE FALSE FALSE 1247.723395 1382.933106 1202.369692 1143.509735 1254.303364 1222.528904 1528.671676 1548.343365 1219.759378 1420.79846 0.878184647 0.973349243 0.84626337 0.80483599 0.882815825 0.860452019 1.075924362 1.089769878 0.858502745 1 10.47248621 -4.746462367 24.05725207 0.918173888 1.082847381 0.587095518 0.061314012 105.0412806 168720.6003 0.010105996 0.0374633 1.79E-05 4.746462367 0.164673493 ATSSSNPSS(ph)PAPDWYKDFVTDADAEVLEHSGK ddPTM_HeLa_CUDC101_4h_R1 2 ATSSSNPSSPAPDWYKDFVTDADAEVLEHSGK 32 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 AT(0.016)S(0.016)S(0.014)S(0.012)NPS(0.193)S(0.748)PAPDWY(0.002)KDFVTDADAEVLEHSGK;ATS(0.002)S(0.006)S(0.005)NPS(0.235)S(0.731)PAPDWY(0.008)KDFVT(0.013)DADAEVLEHSGK ; 101.34 1.78E-10 40113000 5093 3905 4057.5 3959.4 5272.2 4286 5322.5 4734.7 4248 5149.2 TRUE FALSE FALSE 4496.00626 4025.308421 4276.860723 4120.881446 4883.28031 4204.251691 5527.790608 5273.67911 4072.895642 5118.572329 0.878371149 0.786412336 0.835557348 0.805084149 0.95403171 0.821371941 1.079947738 1.030302743 0.795709307 1 12.32152575 -4.746232523 24.99914704 0.907127475 1.055125321 0.407101975 0.079221128 219.5899029 360986.1978 0.012071463 0.044819069 1.79E-05 4.746232523 0.147997847 S(ph)SPVCSTAPVETEPK ddPTM_HeLa_CUDC101_4h_R1 1 SSPVCSTAPVETEPK 15 0 Q96BY7 Q96BY7 ATG2B Autophagy-related protein 2 homolog B 1 0 S(0.5)S(0.5)PVCSTAPVETEPK 160.86 5.95E-05 11820000 4537.3 3608.7 3544.1 3743.2 4354.1 4037.2 3539.4 3362.4 4544.2 3744.3 TRUE FALSE FALSE 4005.444572 3719.87977 3735.704766 3895.863875 4032.906718 3960.197136 3675.915844 3745.162025 4356.886153 3722.028737 1.076145526 0.999422635 1.003674348 1.046704405 1.083523799 1.063988866 0.987610817 1.006215236 1.170567575 1 11.86187348 -4.745586315 24.9310815 1.037426551 0.996913009 0.098648072 0.051283139 326.0576843 512760.2846 0.005034589 0.018710514 1.80E-05 4.745586315 -0.040513542 APS(ph)VANVGSHCDLSLK ddPTM_HeLa_CUDC101_4h_R1 4 APSVANVGSHCDLSLK 16 0 P21333-2;P21333;Q60FE5 P21333-2 FLNA Filamin-A 1 0 APS(1)VANVGSHCDLSLK;APS(1)VANVGSHCDLSLK;APS(1)VANVGSHCDLSLK;APS(0.985)VANVGS(0.015)HCDLSLK ;;; 223.06 1.46E-32 370317000 19687.6 11771.4 11433.5 13001.9 9967.9 14206 15137.3 14437.4 13009.6 12405.3 TRUE FALSE FALSE 17379.84937 12134.06288 12051.62959 13532.17368 9232.587876 13935.04422 15721.15073 16080.89526 12473.33878 12331.51272 1.409385025 0.98398819 0.977303423 1.097365261 0.748698727 1.130035263 1.274876091 1.304048872 1.011501108 1 13.59006217 -4.745168405 5.750848067 1.124632958 1.292859775 0.133098371 0.17122912 0.321599824 33.80573048 0.029879113 0.107940215 1.80E-05 4.745168405 0.168226817 TGQAGS(ph)LSGS(ph)PKPFSPQLSAPITTK ddPTM_HeLa_CUDC101_4h_R1 1 TGQAGSLSGSPKPFSPQLSAPITTK 25 1 A0A087WVZ6;A0A087WYS3;H7C4X9;A0A087WV57;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-16;Q9ULU4-4;Q9ULU4-12;Q9ULU4-14;Q9ULU4-21;Q9ULU4-8;Q9ULU4-23;Q9ULU4-17;Q9ULU4-6;Q9ULU4-3;Q9ULU4-19 A0A087WVZ6 ZMYND8 Protein kinase C-binding protein 1 2 0 T(0.018)GQAGS(0.691)LS(0.377)GS(0.913)PKPFS(0.001)PQLSAPITTK 65.875 0.002321 39256000 2430.7 2223.8 1940.1 2378.3 2504 2457.1 2943.3 2703.8 1925.3 2178.6 TRUE FALSE FALSE 2145.777031 2292.312642 2044.987674 2475.297354 2319.284909 2410.234911 3056.824067 3011.589663 1845.938319 2165.64159 0.990827402 1.058491235 0.944287219 1.142985693 1.070945866 1.11294266 1.411509679 1.39062238 0.852374801 1 11.08057878 -4.744839154 0.897726196 1.000658099 1.526370137 0.803062532 0.076027435 0.274555841 0.256023049 0.008703832 0.119377017 1.80E-05 4.744839154 0.525712037 TDTGIVTVEQS(ph)PSSSK ddPTM_HeLa_CUDC101_4h_R1 1 TDTGIVTVEQSPSSSK 16 0 Q8NFC6;H0Y9Y2 Q8NFC6;H0Y9Y2 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 TDTGIVTVEQS(0.735)PS(0.217)S(0.024)S(0.024)K 203.92 6.09E-17 81366000 6692 6359.4 6403.1 6022.2 7451.3 6993 5378.6 5236.6 6749 6707.7 TRUE FALSE FALSE 5907.573904 6555.325576 6749.270954 6267.811346 6901.632444 6859.620176 5586.054404 5832.713377 6470.803363 6667.802302 0.885985162 0.983131365 1.012218217 0.940011575 1.035068548 1.028767781 0.837765451 0.874757996 0.970455192 1 12.70299561 -4.744777471 24.9957729 0.962781343 0.856261661 0.515636839 0.045806387 204.5811763 306902.4441 0.007989313 0.029723573 1.80E-05 4.744777471 -0.106519681 SVAEGLS(ph)GSLVQEPFQLATEKR ddPTM_HeLa_CUDC101_4h_R1 1 SVAEGLSGSLVQEPFQLATEKR 22 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 SVAEGLS(0.973)GS(0.027)LVQEPFQLATEKR 90.062 0.00025101 10143000 650.7 686.67 563.94 600.23 1071.3 615.08 459.79 395.65 738.03 571.34 TRUE FALSE FALSE 574.4259324 707.8254888 594.4283022 624.7099738 992.2723333 603.3483738 477.5242543 440.6891967 707.608091 567.9416443 1.011417173 1.246299679 1.046636231 1.099954511 1.747137832 1.062342196 0.840798098 0.775940981 1.245916897 1 9.149598891 -4.744280306 5.004533175 1.088890748 0.799568825 0.237339354 0.223540511 0.224758561 14.82984614 0.032488685 0.119810899 1.80E-05 4.744280306 -0.289321924 KLENS(ph)PLGEALR ddPTM_HeLa_CUDC101_4h_R1 1 KLENSPLGEALR 12 1 D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;D6RDK6;D6RBN5;Q9NX40-3;Q9NX40-2;Q9NX40-4;Q9NX40 D6RI08 OCIAD1 OCIA domain-containing protein 1 1 0 KLENS(1)PLGEALR 66.738 0.033912 73318000 6853.6 6036.8 5087.3 5902.4 5560.7 5768.8 4512.3 4108.7 5586.8 5174 TRUE FALSE FALSE 6050.231397 6222.786653 5362.334826 6143.125384 5150.498239 5658.769751 4686.340923 4576.4178 5356.509739 5143.224818 1.176349783 1.209899795 1.042601678 1.194411211 1.001414175 1.100237682 0.911167816 0.889795403 1.041469103 1 12.3284575 -4.743989326 6.071954183 1.094231672 0.89726915 0.533896431 0.073017316 0.106337113 13.360856 0.011818626 0.042600682 1.80E-05 4.743989326 -0.196962522 AAS(ph)LGSSQSSR ddPTM_HeLa_CUDC101_4h_R1 2 AASLGSSQSSR 11 0 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;F8W7E0;H0YA91;E9PSG1;H0Y944;D6RBR1;D6RGF7;E7EN75 P20810-6 CAST Calpastatin 1 0 AAS(0.943)LGS(0.054)S(0.003)QSSR;AAS(0.947)LGS(0.052)S(0.002)QSSR ; 110.64 0.0068102 45044000 3722.7 1935.03 2580.9 2813.6 2838.4 3085.4 3488.2 3330.3 3117.4 3199.4 TRUE FALSE FALSE 3286.330749 1994.645981 2720.431261 2928.350769 2629.016887 3026.551136 3622.741042 3709.40789 2988.899453 3180.369827 1.03331717 0.627174225 0.85538205 0.92075794 0.826638734 0.951634967 1.139094269 1.166344826 0.939796192 1 11.63497882 -4.743987993 5.861107719 0.952933929 1.156495843 0.35945747 0.11903103 0.169446748 18.82357054 0.019116647 0.069114092 1.80E-05 4.743987993 0.203561913 S(ph)RDRHDDYYR ddPTM_HeLa_CUDC101_4h_R1 2 SRDRHDDYYR 10 2 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 0 S(1)RDRHDDYYR;S(1)RDRHDDYYR ; 68.626 0.028042 8894700 922.55 1096.22 970.03 1254.63 1036.84 881.01 781.83 642.2 1063.72 945.32 TRUE FALSE FALSE 814.4100875 1129.993239 1022.472756 1305.799234 960.3543789 864.2062021 811.985445 715.3054521 1019.873011 939.6971946 0.866672894 1.202507835 1.088087484 1.389595757 1.021982809 0.919664555 0.864092656 0.761208458 1.085320907 1 9.876052131 -4.743875951 2.076637776 1.006136126 0.778773291 0.271690977 0.148815091 0.482588819 3.829250979 0.024643972 0.142895534 1.80E-05 4.743875951 -0.227362836 GLLAQGLRPES(ph)PPPAGPLLNGAPAGES(ph)PQPK ddPTM_HeLa_CUDC101_4h_R1 1 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 0 GLLAQGLRPES(1)PPPAGPLLNGAPAGES(1)PQPK 81.137 5.60E-07 351280000 1300.2 1126.4 981.26 918.88 1337.8 1112.9 821.16 706.81 1336.9 1142.6 TRUE FALSE FALSE 1147.792527 1161.103049 1034.309884 956.3558981 1239.113159 1091.673287 852.8324163 787.2703934 1281.792416 1135.803764 1.010555312 1.022274345 0.910641359 0.842008037 1.090957081 0.961146037 0.750862467 0.693139447 1.12853334 1 10.14949788 -4.743626263 3.7092165 0.992832549 0.706783772 0.674020052 0.076875442 0.079032526 2.285681307 0.008957835 0.035760966 1.80E-05 4.743626263 -0.286048777 S(ph)FVLNLGK ddPTM_HeLa_CUDC101_4h_R1 1 SFVLNLGK 8 0 P09382 P09382 LGALS1 Galectin-1 1 0 S(1)FVLNLGK 96.015 0.022492 8452600 2026.9 1831.6 1363.2 1713.2 1959.1 1972.7 1446 1492.1 1468.7 1759.4 TRUE FALSE FALSE 1789.309855 1888.029425 1436.898715 1783.071701 1814.581096 1935.074034 1501.772704 1661.954633 1408.159564 1748.935011 1.023085388 1.079530922 0.821584968 1.019518559 1.037534891 1.106429926 0.858678393 0.950266661 0.805152596 1 10.77226097 -4.74336146 24.99986228 1.010134012 0.904472525 0.061592505 0.09846853 250.3910392 346258.766 0.00965962 0.035989365 1.81E-05 4.74336146 -0.105661486 EGRGESENAGT(ph)NQETR ddPTM_HeLa_CUDC101_4h_R1 1 EGRGESENAGTNQETR 16 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 EGRGES(0.047)ENAGT(0.953)NQETR 193.41 6.86E-15 27282000 2611.7 2372.6 2441.5 2359.1 3129.8 2479.4 2897.5 2648.4 2609 3015.7 TRUE FALSE FALSE 2305.560485 2445.696994 2573.494875 2455.314295 2898.920889 2432.109576 3009.257546 2949.883151 2501.455916 2997.762482 0.769093782 0.815840817 0.858471907 0.819048977 0.967028211 0.811308298 1.003834548 0.984028311 0.834440997 1 11.54967037 -4.743130296 24.73189549 0.877128082 0.993931543 0.352001437 0.06977027 268.5020863 362685.5198 0.012967709 0.048323116 1.81E-05 4.743130296 0.116803461 RLS(ph)PQPQIR ddPTM_HeLa_CUDC101_4h_R1 1 RLSPQPQIR 9 1 C9JU82;A0A0A0MR27;J3QT39;Q49A88-2;Q49A88-3;Q49A88-5;Q49A88-6;Q49A88 C9JU82 CCDC14 Coiled-coil domain-containing protein 14 1 0 RLS(1)PQPQIR 70.685 0.034669 18554000 1250.7 1170.1 1151.7 1319.5 1347 1298.5 1062.9 991.37 1148 1291.1 TRUE FALSE FALSE 1104.094842 1206.149394 1213.964386 1373.314913 1247.634494 1273.733276 1103.896409 1104.223554 1100.678954 1283.42048 0.860275225 0.939792853 0.945882043 1.070042854 0.972116709 0.992452042 0.860120612 0.860375513 0.857613675 1 10.32577819 -4.743030138 24.63458742 0.949529427 0.860247948 0.281391032 0.0599552 243.318073 325593.1114 0.009394727 0.035008726 1.81E-05 4.743030138 -0.089281478 RSS(ph)DGSLSHEEDLAK ddPTM_HeLa_CUDC101_4h_R1 1 RSSDGSLSHEEDLAK 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 RS(0.206)S(0.789)DGS(0.002)LS(0.003)HEEDLAK 94.532 0.0043721 26579000 4066 3115.5 2920.2 2993.2 4688.8 3586.6 2886.3 2616 4371.4 3514.2 TRUE FALSE FALSE 3589.389644 3211.484862 3078.074845 3115.275634 4342.916565 3518.191581 2997.625558 2913.794866 4191.209042 3493.297382 1.02750761 0.919327647 0.881137363 0.891786554 1.243214101 1.007126275 0.85810775 0.834110168 1.199785928 1 11.77037375 -4.742563321 6.190846145 1.004718567 0.843445985 0.264029194 0.114447702 0.148574677 19.62794548 0.013463251 0.048620814 1.81E-05 4.742563321 -0.161272582 TLS(ph)DESICSNR ddPTM_HeLa_CUDC101_4h_R1 2 TLSDESICSNR 11 0 Q9P2F8;Q9P2F8-2 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 T(0.304)LS(0.696)DESICSNR;T(0.002)LS(0.996)DES(0.002)ICSNR ; 190.78 3.11E-11 33538000 2108.7 1729.14 1573.24 1601.12 2214.58 1966.22 1478.81 1398.68 2217.6 1725.15 TRUE FALSE FALSE 1861.521383 1782.412754 1658.294113 1666.420594 2051.214845 1928.717629 1535.848197 1557.900078 2126.189589 1714.888731 1.085505636 1.039375163 0.966998082 0.971736862 1.196121246 1.124689663 0.895596413 0.908455487 1.239841134 1 10.74389926 -4.742555466 24.99530828 1.046608853 0.902025808 0.338143738 0.090306886 187.3511071 247979.4086 0.00991702 0.036978955 1.81E-05 4.742555466 -0.144583046 TRTDS(ph)TSDGRPAWMR ddPTM_HeLa_CUDC101_4h_R1 1 TRTDSTSDGRPAWMR 15 2 Q14204;A0A2R8Y706;A0A2R8Y5T0;A0A2R8Y6I5;A0A2R8Y542 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 1 0 T(0.008)RT(0.008)DS(0.869)T(0.094)S(0.021)DGRPAWMR 76.761 0.022185 13625000 461.75 361.07 624.9 431.78 490.75 436.76 701.35 686.38 520.5 473.88 TRUE FALSE FALSE 407.624365 372.1941387 658.6839842 449.3898547 454.5483502 428.4295307 728.4013044 764.5147248 499.0447697 471.0613407 0.865331815 0.7901182 1.398297689 0.953994344 0.964945138 0.909498389 1.546298203 1.622962147 1.059405064 1 8.879771127 -4.74228383 7.548475541 0.959387081 1.589950329 0.690756991 0.157191039 0.062325535 15.8208094 0.02134386 0.076628551 1.81E-05 4.74228383 0.630563248 SDSGGSS(ph)SEPFDR ddPTM_HeLa_CUDC101_4h_R1 2 SDSGGSSSEPFDR 13 0 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 S(0.033)DS(0.068)GGS(0.01)S(0.445)S(0.445)EPFDR;SDS(0.096)GGS(0.028)S(0.438)S(0.438)EPFDR ; 235.31 2.69E-43 120105000 1763.65 1754.72 1703.25 1783.64 2074.2 1912.83 2054.57 1950.78 1829.58 2204.7 TRUE FALSE FALSE 1556.917621 1808.780843 1795.332847 1856.384549 1921.190398 1876.345955 2133.815453 2172.84891 1754.163938 2191.586346 0.710406698 0.825329491 0.819193298 0.847050609 0.876620901 0.856158808 0.973639691 0.991450286 0.800408317 1 11.09775981 -4.741935577 4.716319355 0.853826995 0.986769795 0.392402881 0.068861345 0.234422802 12.79911832 0.014806827 0.055432789 1.81E-05 4.741935577 0.1329428 SSLFS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SSLFSPR 7 0 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 SSLFS(1)PR 85.862 0.038147 21848000 5571.2 4424.6 3677.3 3914.5 4611.9 4194.4 4417.5 4051.8 4205.4 3810.6 TRUE FALSE FALSE 4918.152381 4560.916682 3876.105961 4074.15023 4271.689325 4114.398808 4587.884455 4513.040534 4032.051632 3787.934382 1.298373173 1.204064332 1.023276955 1.075559875 1.127709431 1.086185344 1.21118372 1.191425215 1.064446008 1 11.88719562 -4.741873568 24.55732033 1.131280632 1.201304532 0.118970669 0.084811555 519.3615715 651844.3921 0.016361499 0.061031947 1.81E-05 4.741873568 0.0700239 VPTANVSVVDLT(ph)CR ddPTM_HeLa_CUDC101_4h_R1 1 VPTANVSVVDLTCR 14 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VPTANVS(0.004)VVDLT(0.996)CR 101.3 0.0029492 0 536.23 446.88 310.98 372.19 601.84 391.02 605.1 453.65 416.9 565.04 TRUE FALSE FALSE 473.3739323 460.6478431 327.7925195 387.3695169 557.4434622 383.561945 628.4389097 505.2916823 399.7152055 561.679117 0.842783572 0.820126348 0.583593923 0.689663378 0.992458942 0.682884468 1.11885753 0.899609167 0.711643345 1 9.133602355 -4.741122459 24.97148146 0.867180823 1.009233219 0.113409113 0.151746818 414.9358777 509988.5041 0.021967635 0.081989752 1.82E-05 4.741122459 0.142052395 EVEEELATSGGQS(ph)PTGEQIPQFQQR ddPTM_HeLa_CUDC101_4h_R1 1 EVEEELATSGGQSPTGEQIPQFQQR 25 0 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;H0Y390;Q9UPN3-5;H3BPE1;H3BQK9 A0A590UJG2;H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 EVEEELATSGGQS(0.704)PT(0.296)GEQIPQFQQR 104.67 7.54E-07 6094400 885.69 940.59 836.13 766.74 1049 1025.1 1088.5 1113.4 928.4 945.9 TRUE FALSE FALSE 781.8707608 969.568463 881.333717 798.0109713 971.6173599 1005.547925 1130.48381 1240.144955 890.130959 940.2737447 0.831535247 1.031155521 0.937316097 0.848700685 1.033334564 1.069420401 1.202292222 1.318919051 0.946672141 1 9.876937024 -4.74099717 1.068295166 0.92480937 1.372207753 0.813164204 0.061549979 0.328134271 0.480813639 0.011671987 0.13669274 1.82E-05 4.74099717 0.447398383 T(ph)SPLKDNPSPEPQLDDIKR ddPTM_HeLa_CUDC101_4h_R1 3 TSPLKDNPSPEPQLDDIKR 19 2 Q96JC9-2;Q96JC9 Q96JC9-2 EAF1 ELL-associated factor 1 1 0 T(0.499)S(0.499)PLKDNPS(0.001)PEPQLDDIKR;T(0.707)S(0.293)PLKDNPSPEPQLDDIKR;T(0.812)S(0.188)PLKDNPSPEPQLDDIKR ;; 144.5 0.00014349 192050000 7068.4 6641.2 6950.7 6626.2 7199.8 6251.2 5151.9 4494.8 6081.8 6069.4 TRUE FALSE FALSE 6239.852867 6845.8075 7326.475867 6896.445077 6668.685098 6131.968775 5350.610509 5006.469863 5831.10563 6033.298939 1.034235653 1.134670695 1.214339939 1.143063711 1.105313223 1.01635421 0.886846576 0.829806365 0.966487106 1 12.55873135 -4.739140683 2.850231086 1.056009629 0.839558811 0.58740574 0.072956435 0.176458476 2.815324182 0.012073038 0.055143146 1.82E-05 4.739140683 -0.216450819 SVSSSS(ph)YR ddPTM_HeLa_CUDC101_4h_R1 1 SVSSSSYR 8 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SVS(0.154)S(0.154)S(0.221)S(0.472)YR 90.601 0.028538 19781000 5453 2606.4 4919.5 5087.9 3100.5 3184 4096.7 1967.4 4091.2 5754.8 TRUE FALSE FALSE 4813.807606 2686.700095 5185.463051 5295.406554 2871.782292 3123.270505 4254.711091 2191.360863 3922.559004 5720.570194 0.841490873 0.469655996 0.906459125 0.925678101 0.502009799 0.545971887 0.74375647 0.38306686 0.685693711 1 12.48194324 -4.738908751 0.127452444 1.178789631 1.31E-16 0.169334252 0.187254729 17.32022971 0.441208261 0.919991978 3.844339032 1.82E-05 4.738908751 -1.178789631 ESTESSNTT(ph)IEDEDVKAR ddPTM_HeLa_CUDC101_4h_R1 1 ESTESSNTTIEDEDVKAR 18 1 H0Y9J2;D6R938;Q13557-8;Q13557-12;Q13557;E9PBG7;E9PF82;Q13557-10;Q13557-6;Q13557-11 H0Y9J2 CAMK2D Calcium/calmodulin-dependent protein kinase type II subunit delta 1 0 ESTESSNT(0.001)T(0.999)IEDEDVKAR 113.71 0.00037012 22029000 732.91 722.42 774.83 716.69 913.41 733.1 667.25 601.88 778.51 780.68 TRUE FALSE FALSE 646.9994008 744.6769039 816.7196535 745.919716 846.0295641 719.1173389 692.986056 670.3955863 746.4194883 776.0364806 0.83372292 0.959590074 1.052424305 0.961191561 1.090193032 0.926654039 0.892981288 0.863871226 0.961835567 1 9.599980663 -4.738862843 3.602275661 0.947447006 0.873212368 0.165789873 0.06929229 0.431751031 11.59384657 0.012356047 0.050209779 1.82E-05 4.738862843 -0.074234638 S(ph)YVTTSTR ddPTM_HeLa_CUDC101_4h_R1 2 SYVTTSTR 8 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 S(0.999)YVT(0.001)TSTR;S(0.601)YVT(0.092)T(0.307)STR ; 144.65 0.0039651 258720000 2981.8 2145.27 2466.2 2336.1 2833.2 2497.4 2667.1 2477.7 2349.8 2627 TRUE FALSE FALSE 2632.277924 2211.363226 2599.530232 2431.376255 2624.200481 2449.766256 2769.97094 2759.751353 2252.940249 2611.374487 1.008004764 0.846819649 0.99546436 0.93107146 1.004911587 0.938113728 1.060732941 1.056819451 0.862741158 1 11.35059365 -4.738273012 24.57088487 0.983419558 1.058776318 0.196785568 0.062856776 204.6911529 217096.7045 0.007094369 0.026506626 1.83E-05 4.738273012 0.07535676 NYILDQTNVYGS(ph)AQR ddPTM_HeLa_CUDC101_4h_R1 3 NYILDQTNVYGSAQR 15 0 M0R3F1;A0A0A0MRA5;B7Z4B8;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2 M0R3F1 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 0 NYILDQTNVYGS(1)AQR;NYILDQTNVYGS(1)AQR;NYILDQTNVYGS(1)AQR ;; 191.44 2.02E-11 27930000 6556.8 5391.6 6353.6 5991.7 6434.6 6033.5 6296.9 5877.7 6713.8 6588.1 TRUE FALSE FALSE 5788.221843 5557.708805 6697.094835 6236.067424 5959.932378 5918.42104 6539.773542 6546.79361 6437.054322 6548.913688 0.883844576 0.848645908 1.022626828 0.952229289 0.910064273 0.903725613 0.998604326 0.99967627 0.982919401 1 12.6770399 -4.737090058 23.71924326 0.938475797 0.999140471 0.186353379 0.051088513 194.2259021 189193.9045 0.008107353 0.030295321 1.83E-05 4.737090058 0.060664674 ESYTEEIVS(ph)EAESHVS(ph)GISR ddPTM_HeLa_CUDC101_4h_R1 4 ESYTEEIVSEAESHVSGISR 20 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 2 0 ESYT(0.005)EEIVS(0.995)EAES(0.204)HVS(0.72)GIS(0.076)R;ESYTEEIVS(1)EAES(0.001)HVS(0.971)GIS(0.028)R;ESYT(0.001)EEIVS(0.998)EAES(0.007)HVS(0.967)GIS(0.026)R;ESYTEEIVS(1)EAES(0.001)HVS(0.991)GIS(0.008)R ;;; 111.81 0.00039872 12913600 3944.23 2531.92 2773.08 2907.81 3639.33 3760.17 4643.04 4773.56 3304.22 3370 TRUE FALSE FALSE 3481.893338 2609.925454 2923.001093 3026.40306 3370.863876 3688.451022 4822.123608 5316.962775 3168.018653 3349.95509 1.03938508 0.77909267 0.872549337 0.90341601 1.006241512 1.101044916 1.43945918 1.587174345 0.945689888 1 11.70992604 -4.73630164 2.048512041 0.97949852 1.593272419 0.890861122 0.079670303 0.100078607 0.766807345 0.013443457 0.080046741 1.84E-05 4.73630164 0.6137739 TGNESGSNLS(ph)DSGSVK ddPTM_HeLa_CUDC101_4h_R1 1 TGNESGSNLSDSGSVK 16 0 Q9UDT6-2;Q9UDT6 Q9UDT6-2 CLIP2 CAP-Gly domain-containing linker protein 2 1 0 TGNESGS(0.004)NLS(0.684)DS(0.312)GSVK 157.73 8.11E-05 5671200 4081.8 3784.1 3740.7 3983.4 4570 3489.5 3022.2 2429 3971 3823.4 TRUE FALSE FALSE 3603.337592 3900.683636 3942.933557 4145.86027 4232.880205 3422.943601 3138.767266 2705.507542 3807.313699 3800.658247 0.948082505 1.026317912 1.037434387 1.090826904 1.113722921 0.900618624 0.82584833 0.71185236 1.001751132 1 11.89203359 -4.736243168 2.212860724 1.000229645 0.73105435 0.778999199 0.055106333 0.141845577 1.297540899 0.009203988 0.051083411 1.84E-05 4.736243168 -0.269175295 TAS(ph)TNNIAQAR ddPTM_HeLa_CUDC101_4h_R1 1 TASTNNIAQAR 11 0 Q9UBI6 Q9UBI6 GNG12 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 1 0 T(0.17)AS(0.802)T(0.028)NNIAQAR 81.278 0.03712 3773400 1892.1 1664.1 2249.2 1725.9 1898.9 1703.2 1571.2 1295.8 1825.7 1941 TRUE FALSE FALSE 1670.310906 1715.368949 2370.798555 1796.289662 1758.82193 1670.714298 1631.80171 1443.308634 1750.443873 1929.454846 0.865690591 0.889043324 1.228740108 0.930983001 0.911564183 0.865899661 0.845732002 0.748039602 0.907221994 1 10.91397757 -4.73603964 1.187065862 0.953182176 0.742474979 0.340792662 0.097426954 0.798159926 1.539212669 0.015817218 0.1677583 1.84E-05 4.73603964 -0.210707197 S(ph)ESAPTLHPYSPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SESAPTLHPYSPLSPK 16 0 Q8WUF5;K7EN03 Q8WUF5 PPP1R13L RelA-associated inhibitor 2 0 S(0.717)ES(0.201)APT(0.081)LHPY(0.003)S(0.008)PLS(0.989)PK 103.84 0.0096395 10305000 4445.7 2813.1 3274.5 3773.4 4177.9 3743.3 4437.8 4244.2 3921 4000.1 TRUE FALSE FALSE 3924.581785 2899.768277 3451.529375 3927.295562 3869.704641 3671.902789 4608.967433 4727.342572 3759.37472 3976.307227 0.986991588 0.729261627 0.868023816 0.987674075 0.973190556 0.923445443 1.159107476 1.188877595 0.945443726 1 11.95721351 -4.735960827 8.986238617 0.960154992 1.175027009 0.570061444 0.081875567 0.170392178 53.16348363 0.012588403 0.04599326 1.84E-05 4.735960827 0.214872017 LAPPS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 LAPPSPAR 8 0 O75145-2;O75145 O75145-2 PPFIA3 Liprin-alpha-3 1 0 LAPPS(1)PAR;LAPPS(1)PAR ; 105.2 0.014086 56879000 1784.27 1375.08 1514.98 1229.14 1683.6 1509.85 1646.67 1544.84 1602.74 1655.18 TRUE FALSE FALSE 1575.120575 1417.444585 1596.884401 1279.269642 1559.404182 1481.052127 1710.182613 1720.698341 1536.674379 1645.334916 0.957325199 0.861493044 0.970552795 0.777513216 0.947773105 0.900152372 1.039413069 1.045804307 0.933958408 1 10.68416557 -4.735929994 21.60872857 0.949315014 1.042609535 0.284073161 0.065565483 59.07929021 50040.664 0.009896217 0.036966669 1.84E-05 4.735929994 0.093294521 RMS(ph)GEPIQTVESIR ddPTM_HeLa_CUDC101_4h_R1 2 RMSGEPIQTVESIR 14 1 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 RMS(1)GEPIQTVESIR;RMS(1)GEPIQTVESIR ; 85.046 0.010645 19900000 2433.1 2421.4 2537.3 2448 2440 2663 1938.72 1908.98 2940.1 2443.4 TRUE FALSE FALSE 2147.895706 2496.000464 2674.474113 2547.840021 2260.006061 2612.207712 2013.49708 2126.290567 2818.907834 2428.866548 0.884320181 1.027640018 1.101120239 1.048983125 0.93047766 1.075484248 0.828986295 0.875425028 1.160585721 1 11.24606751 -4.735410156 24.99976517 0.974591088 0.852205546 0.246312215 0.089972317 229.1724853 220105.1039 0.01112107 0.041583264 1.84E-05 4.735410156 -0.122385542 HAQDSDPRS(ph)PTLGIAR ddPTM_HeLa_CUDC101_4h_R1 2 HAQDSDPRSPTLGIAR 16 1 F5GX58;F8WDL1;Q99618;J3KMY0 F5GX58 CDCA3 Cell division cycle-associated protein 3 1 0 HAQDS(0.001)DPRS(0.5)PT(0.5)LGIAR;HAQDSDPRS(0.804)PT(0.196)LGIAR ; 98.573 0.0027454 44292000 1985.63 1757.78 1651.13 1429.79 2039.79 1692.37 2038.56 1822.52 1923.18 2077.34 TRUE FALSE FALSE 1752.877461 1811.935118 1740.395082 1488.103016 1889.318756 1660.090862 2117.187942 2029.98831 1843.905706 2064.983889 0.848857694 0.877457266 0.842812911 0.720636623 0.914931475 0.803924365 1.02528061 0.983052856 0.892939512 1 11.01191481 -4.7351296 24.99685831 0.894902928 1.004166836 0.297107765 0.074917114 291.9194953 277347.4834 0.012751425 0.047681135 1.84E-05 4.7351296 0.109263908 INFS(ph)DLDQR ddPTM_HeLa_CUDC101_4h_R1 4 INFSDLDQR 9 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154;Q15154-4;Q15154-2;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 INFS(1)DLDQR;INFS(1)DLDQR;INFS(1)DLDQR;INFS(1)DLDQR ;;; 142.76 0.0014938 77731000 19963.9 18191.3 16734.3 17214.6 17487.3 14859.6 12000.7 9270.9 19012.4 18767.3 TRUE FALSE FALSE 17623.76191 18751.75239 17639.00688 17916.6858 16197.29672 14576.17789 12463.57102 10326.26178 18228.70082 18655.67126 0.94468656 1.005150237 0.945503736 0.96038816 0.868223742 0.781326905 0.668084833 0.55351864 0.977113102 1 14.18732665 -4.734580456 0.822628294 0.977001716 0.454769922 0.982337011 0.019481954 0.144248569 0.106657925 0.003906884 0.058768631 1.84E-05 4.734580456 -0.522231794 VQGLLENGDSVTS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 3 VQGLLENGDSVTSPEK 16 0 P41229-4;P41229-3;P41229-2;P41229-5;P41229 P41229-4 KDM5C Lysine-specific demethylase 5C 1 0 VQGLLENGDSVT(0.024)S(0.976)PEK;VQGLLENGDS(0.003)VT(0.242)S(0.755)PEK;VQGLLENGDSVT(0.024)S(0.976)PEK ;; 191.44 2.01E-11 61655000 10577.6 9026.9 7742.6 7530.8 8045.7 6969 5302.1 4119.4 9495.3 8997.6 TRUE FALSE FALSE 9337.709763 9305.008089 8161.188376 7837.938575 7452.18474 6836.077936 5506.603773 4588.335845 9103.899715 8944.081875 1.044009871 1.040353635 0.912467986 0.876326792 0.833197286 0.764312987 0.615670099 0.513002442 1.017868557 1 13.12671768 -4.734448036 0.550513282 1.02578158 0.318043869 0.969389207 0.030499101 0.325700632 0.091053477 0.007324231 0.1330648 1.84E-05 4.734448036 -0.707737711 KSPS(ph)SDSWTCADTSTER ddPTM_HeLa_CUDC101_4h_R1 1 KSPSSDSWTCADTSTER 17 1 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHH7;Q8N6T3-4;H0YIQ0 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 KSPS(0.996)S(0.001)DS(0.002)WT(0.001)CADTSTER 199.91 2.61E-16 15880000 2187.7 1730.3 1933.6 2098.2 1972.7 2172.6 2406.8 2375.9 2141.9 2232.5 TRUE FALSE FALSE 1931.261122 1783.608492 2038.136265 2183.773665 1827.177851 2131.161275 2499.631082 2646.362852 2053.609975 2219.220991 0.870242815 0.803709274 0.91840167 0.984027131 0.823342001 0.960319537 1.126355191 1.192473784 0.925374257 1 11.11583762 -4.734131782 3.201502052 0.921274221 1.178721654 0.734336576 0.060544753 0.113597146 2.328345141 0.010208288 0.04399772 1.84E-05 4.734131782 0.257447433 NEIIQS(ph)PISQVPSVEK ddPTM_HeLa_CUDC101_4h_R1 2 NEIIQSPISQVPSVEK 16 0 Q7Z3T8 Q7Z3T8 ZFYVE16 Zinc finger FYVE domain-containing protein 16 1 0 NEIIQS(0.997)PIS(0.003)QVPSVEK;NEIIQS(0.92)PIS(0.08)QVPSVEK ; 205.98 2.32E-23 15552100 8709.2 7469.9 7461.7 8137.8 8351.9 6550.9 5095.1 3550.2 7764.1 7618.9 TRUE FALSE FALSE 7688.320778 7700.038765 7865.102072 8469.694659 7735.796976 6425.952497 5291.619714 3954.340418 7444.060512 7573.582444 1.01514981 1.016697028 1.038491643 1.118320784 1.021418468 0.84846934 0.69869441 0.522122846 0.982898195 1 12.88676017 -4.733402686 1.583421629 1.020078782 0.513914007 0.947795098 0.039865596 0.081377246 0.332064829 0.006191867 0.048289763 1.85E-05 4.733402686 -0.506164775 HSNSNS(ph)VDDTIVALNMR ddPTM_HeLa_CUDC101_4h_R1 1 HSNSNSVDDTIVALNMR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 HS(0.017)NS(0.017)NS(0.966)VDDTIVALNMR 134.58 0.0001509 3579500 1555.1 1330.9 958.71 1212.6 1562.7 1207.2 1638.9 1455.8 1680.1 1576.9 TRUE FALSE FALSE 1372.813535 1371.903451 1010.540763 1262.055069 1447.422734 1184.174671 1702.112922 1621.522387 1610.845567 1567.520529 0.875786639 0.875206051 0.644674659 0.805128256 0.923383591 0.755444442 1.085863241 1.034450495 1.027639216 1 10.61426862 -4.733143396 24.99789099 0.89328682 1.060157072 0.31190912 0.109945172 236.7544593 209155.5999 0.016411137 0.061380807 1.85E-05 4.733143396 0.166870252 LGHDPYRLT(ph)PDPYR ddPTM_HeLa_CUDC101_4h_R1 1 LGHDPYRLTPDPYR 14 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6 P18583-10 SON Protein SON 1 0 LGHDPY(0.024)RLT(0.976)PDPYR 80.102 0.0302 55783000 1533.1 1125.3 1231.7 1272.5 1356.1 1326.1 809.21 676.8 1226 1306.8 TRUE FALSE FALSE 1353.392342 1159.969159 1298.289428 1324.39805 1256.063205 1300.806852 840.4215008 753.8441763 1175.463761 1299.027095 1.041850741 0.892952243 0.999432138 1.019530736 0.966926101 1.001370069 0.646962256 0.580314436 0.904880095 1 10.34321581 -4.733115511 4.512972763 1.005634379 0.59783417 0.886504591 0.051650694 0.032818808 1.530349227 0.006041175 0.023143599 1.85E-05 4.733115511 -0.407800209 AAAT(ph)PESQEPQAK ddPTM_HeLa_CUDC101_4h_R1 3 AAATPESQEPQAK 13 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 AAAT(0.984)PES(0.016)QEPQAK;AAAT(0.995)PES(0.005)QEPQAK;AAAT(0.995)PES(0.005)QEPQAK ;; 173.33 4.07E-11 46120000 10703 9687.4 8980.3 9360.6 10778.5 10537.9 8044.1 7570.4 9205 9314.6 TRUE FALSE FALSE 9448.410565 9985.857312 9465.802182 9742.365728 9983.391529 10336.90711 8354.363632 8432.183735 8825.566004 9259.196345 1.020435275 1.078479918 1.022313582 1.052182648 1.078213611 1.116393554 0.902277403 0.910682031 0.953167605 1 13.17667126 -4.732974398 24.99883343 1.029317405 0.906479504 0.583517637 0.044423467 115.7011276 101610.6637 0.005927763 0.022171045 1.85E-05 4.732974398 -0.122837901 TSPPGGELS(ph)PGAGR ddPTM_HeLa_CUDC101_4h_R1 1 TSPPGGELSPGAGR 14 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 TSPPGGELS(1)PGAGR 94.673 0.010587 15339000 1294 1290 958.84 997.61 1215.3 952.06 846.35 696.66 1228.8 1129.1 TRUE FALSE FALSE 1142.319282 1329.743371 1010.677791 1038.296848 1125.64974 933.9010417 878.994003 775.9649584 1178.148344 1122.384063 1.017761495 1.184748977 0.90047411 0.925081603 1.00290959 0.832069051 0.783149041 0.69135422 1.049683778 1 10.13235071 -4.732570133 0.771897621 1.016275161 0.608144066 0.728970665 0.070882907 0.59824232 0.376051602 0.011502172 0.182026612 1.85E-05 4.732570133 -0.408131095 FMS(ph)SPVLSDLPR ddPTM_HeLa_CUDC101_4h_R1 1 FMSSPVLSDLPR 12 0 E9PJV4;E9PLJ6;E9PL62;E9PP25;E9PS02;E9PP62;E9PIU0;Q6MZQ0-4;Q6MZQ0 E9PJV4 PRR5L Proline-rich protein 5-like 1 0 FMS(0.5)S(0.5)PVLSDLPR 174.21 5.87E-07 4237800 1263.8 1137.4 964.15 1007.8 1100 1139.1 1213.9 1195 926.81 1031.1 TRUE FALSE FALSE 1115.65928 1172.441946 1016.274865 1048.90244 1018.855192 1117.373565 1260.72053 1331.03397 888.6064995 1024.966971 1.088483152 1.14388266 0.991519623 1.023352429 0.994037096 1.09015568 1.230010883 1.298611572 0.866961106 1 10.00136171 -4.732206095 2.610580232 1.042297916 1.289476653 0.64862428 0.071189277 0.102589746 1.350685622 0.007319925 0.035826651 1.85E-05 4.732206095 0.247178737 T(ph)QQSPISNGSPELGIK ddPTM_HeLa_CUDC101_4h_R1 1 TQQSPISNGSPELGIK 16 0 Q15723-2;Q15723-3;Q15723-1;Q15723 Q15723-2 ELF2 ETS-related transcription factor Elf-2 1 0 T(0.658)QQS(0.319)PIS(0.016)NGS(0.006)PELGIK 113.22 0.0061705 15995000 2633.5 2336.7 2465.6 2410.5 2356.3 2554.5 2113.3 2067 2215.7 2355.6 TRUE FALSE FALSE 2324.805122 2408.690957 2598.897794 2508.810609 2182.480443 2505.777169 2194.810689 2302.298925 2124.367908 2341.588786 0.99283236 1.028656684 1.109886505 1.07141383 0.932051117 1.070118367 0.937316877 0.983220853 0.90723355 1 11.19327203 -4.731778718 24.99879352 1.01159592 0.960268863 0.113580667 0.059761348 317.9046696 267933.8006 0.006985431 0.026130279 1.85E-05 4.731778718 -0.051327056 TTDGSLQNT(ph)SSEGSR ddPTM_HeLa_CUDC101_4h_R1 1 TTDGSLQNTSSEGSR 15 0 A8MQB8;Q06787-6;G3V0J0;Q06787-2;Q06787-4;Q06787-7 A8MQB8 FMR1 1 0 TTDGS(0.001)LQNT(0.85)S(0.135)S(0.014)EGSR 127.49 0.0035973 4948300 2046.7 1443 1635.4 1550.2 1831.3 1646.1 1765.1 1637.1 1767.5 1700.5 TRUE FALSE FALSE 1806.788929 1487.45712 1723.814671 1613.423857 1696.208647 1614.703385 1833.180498 1823.460847 1694.642902 1690.38535 1.068862155 0.879951497 1.019776154 0.954471036 1.003444952 0.955227981 1.084474909 1.078724946 1.002518687 1 10.72313645 -4.730175898 24.89976233 1.00956745 1.081600079 0.27605819 0.051579074 233.9680156 186340.1404 0.00784599 0.029351242 1.86E-05 4.730175898 0.072032629 AS(ph)LSSAPVVLVGDHA ddPTM_HeLa_CUDC101_4h_R1 2 ASLSSAPVVLVGDHA 15 0 Q9HBH9 Q9HBH9 MKNK2 MAP kinase-interacting serine/threonine-protein kinase 2 1 0 AS(0.999)LS(0.001)SAPVVLVGDHA;AS(0.994)LS(0.005)S(0.001)APVVLVGDHA ; 171.36 6.66E-07 10407900 4015.5 3980 4631.8 3952.9 4549.4 4026.7 3345 2989.86 4260.4 4196.4 TRUE FALSE FALSE 3544.809177 4102.619083 4882.209118 4114.116348 4213.799826 3949.897406 3474.01777 3330.213577 4084.784509 4171.439626 0.84978077 0.983501968 1.170389495 0.986258155 1.010154815 0.946890705 0.832810272 0.798336756 0.979226568 1 12.02632965 -4.730041683 3.72620545 0.960099912 0.806508492 0.404514462 0.078862679 0.224890048 6.463236311 0.013552039 0.055033685 1.86E-05 4.730041683 -0.15359142 FS(ph)GGFGAR ddPTM_HeLa_CUDC101_4h_R1 3 FSGGFGAR 8 0 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;F6S8Q4;A0A2R8Y645;O00571;O00571-2;A0A2U3TZJ9;A0A0D9SFB3;A0A0D9SF53;A0A0D9SG12;A0A2R8YF78;A0A2R8YDT5;A0A2R8Y7T2;A0A0J9YVQ7;O15523-2;O15523;A0A087WVZ1 A0A2R8Y5G6 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 1 0 FS(1)GGFGAR;FS(1)GGFGAR;FS(1)GGFGAR ;; 93.598 0.024705 96363100 16564 14309.4 12456.1 14479 14403.4 14173.2 11049.2 5853.64 13659.5 15415.8 TRUE FALSE FALSE 14622.39303 14750.25565 13129.51444 15069.5162 13340.88988 13902.86982 11475.37135 6519.994716 13096.44963 15324.10614 0.954208546 0.962552434 0.856788274 0.983386311 0.870581929 0.907254864 0.748844418 0.425473085 0.854630574 1 13.9035153 -4.072115251 1.070536825 0.964672752 1.03E-17 0.877083098 0.056274403 0.44599888 0.31014613 0.0070068 0.535174691 8.47E-05 4.072115251 -0.964672752 down TPS(ph)PTPQPTSPQR ddPTM_HeLa_CUDC101_4h_R1 1 TPSPTPQPTSPQR 13 0 O15021;O15021-2;O15021-3;O15021-6;H7C1I9 O15021 MAST4 Microtubule-associated serine/threonine-protein kinase 4 1 0 T(0.005)PS(0.879)PT(0.116)PQPTSPQR 127.3 8.93E-05 0 616.84 480.63 406.92 409.73 515.39 496.74 638.7 622.64 487.71 490.15 TRUE FALSE FALSE 544.5349503 495.4376406 428.9193261 426.4405604 477.3707065 487.2655121 663.3348729 693.5188208 467.6063874 487.234566 1.117603282 1.016835987 0.880313828 0.875226411 0.979755419 1.000063514 1.361428189 1.42337771 0.959715135 1 8.928472676 -4.729667161 5.564066069 1.019840583 1.402243917 0.82010191 0.075657117 0.068099929 5.55282945 0.012950685 0.048330523 1.86E-05 4.729667161 0.382403334 VLEDEEGSKDIELS(ph)DDPYDCIR ddPTM_HeLa_CUDC101_4h_R1 1 VLEDEEGSKDIELSDDPYDCIR 22 1 Q15024 Q15024 EXOSC7 Exosome complex component RRP42 1 0 VLEDEEGS(0.438)KDIELS(0.559)DDPY(0.003)DCIR 54.511 0.014794 79422000 3009.4 3008.6 3402.3 3373 4145 5192.1 5061.4 5294 2709.5 752.31 TRUE FALSE FALSE 2656.642694 3101.2914 3586.238629 3510.565519 3839.231608 5093.069343 5256.619893 5896.647561 2597.813263 747.8352267 3.552443906 4.147025026 4.795493047 4.694303497 5.133793476 6.810416468 7.029115113 7.884955603 3.473777606 1 9.54657662 -4.729610574 0.167492391 2.41E-17 13.57289013 0.846730649 0.751068586 1.721945559 0.060648239 0.877452376 5.264564854 1.86E-05 4.729610574 13.57289013 up DTSLDFRPVVS(ph)PANGVEGVRVDQDDDQDSSSLK ddPTM_HeLa_CUDC101_4h_R1 1 DTSLDFRPVVSPANGVEGVRVDQDDDQDSSSLK 33 2 Q8ND24 Q8ND24 RNF214 RING finger protein 214 1 0 DT(0.01)S(0.009)LDFRPVVS(0.981)PANGVEGVRVDQDDDQDSSSLK 59.038 0.00038545 13810000 871.5 1017.9 598.81 870.72 837.3 913.77 1019.6 754.29 880.63 758.34 TRUE FALSE FALSE 769.3440911 1049.260292 631.1834799 906.2317252 775.5340471 896.3413597 1058.926314 840.1553247 844.3300587 753.82936 1.020581224 1.391906907 0.837302861 1.202170907 1.028792573 1.189050742 1.404729465 1.114516586 1.120054622 1 9.558094176 -4.729499328 0.254026302 0.982827948 1.427699371 0.067039993 0.161014019 8.355806425 0.525268728 0.108106062 1.150010089 1.86E-05 4.729499328 0.444871423 SDS(ph)YSQSLK ddPTM_HeLa_CUDC101_4h_R1 1 SDSYSQSLK 9 0 Q9H8W4 Q9H8W4 PLEKHF2 Pleckstrin homology domain-containing family F member 2 1 0 S(0.121)DS(0.877)YSQS(0.002)LK 89.356 0.029581 11374000 2093.1 1707.3 1826.8 1660.3 1799.5 1994.3 2086.6 2134.4 1874.9 1694.2 TRUE FALSE FALSE 1847.749991 1759.899889 1925.562334 1728.01421 1666.75447 1956.26205 2167.080861 2377.371468 1797.615828 1684.122823 1.09715869 1.044994976 1.143362175 1.026061868 0.989687003 1.161591081 1.286771268 1.411637819 1.067389981 1 10.71778164 -4.727443715 1.891166006 1.049582837 1.407038476 0.872766625 0.045704666 0.108235974 0.683284903 0.007518219 0.049231734 1.87E-05 4.727443715 0.357455639 GS(ph)PTSAYPER ddPTM_HeLa_CUDC101_4h_R1 1 GSPTSAYPER 10 0 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 GS(0.99)PT(0.008)S(0.002)AYPER 102.53 0.013507 64410000 1162.2 990.13 1041.3 1145.2 1020 1034.6 1155.4 1095.3 856.13 1104.2 TRUE FALSE FALSE 1025.968678 1020.634732 1097.595828 1191.906206 944.7566321 1014.866729 1199.964165 1219.984525 820.839959 1097.632169 0.934710832 0.929851329 0.999966891 1.085888551 0.860722434 0.924596379 1.093229771 1.11146936 0.747827899 1 10.10017895 -4.727310727 10.27744746 0.966155969 1.102772832 0.317463702 0.08922284 0.297320156 85.8657648 0.008018128 0.029755559 1.87E-05 4.727310727 0.136616863 RGMADS(ph)LES(ph)T(ph)PLPS(ph)PEDRLAK ddPTM_HeLa_CUDC101_4h_R1 1 RGMADSLESTPLPSPEDRLAK 21 2 Q9BR77;F5H5Q8 Q9BR77 CCDC77 Coiled-coil domain-containing protein 77 4 0 RGMADS(1)LES(1)T(1)PLPS(1)PEDRLAK 48.112 0.020446 8261200 2697.3 2636 2248.5 2126.8 2435.4 2360.2 1972 1803.1 2261.7 2102.6 TRUE FALSE FALSE 2381.126583 2717.212036 2370.060711 2213.540097 2255.745394 2315.183117 2048.060701 2008.357616 2168.471769 2090.093642 1.139243972 1.300043204 1.133949534 1.059062643 1.079255661 1.107693489 0.979889446 0.960893606 1.037499816 1 11.02935186 -4.727031712 6.741583644 1.091420453 0.968436832 0.316032653 0.077783885 0.217729356 28.7434719 0.012799188 0.047424559 1.87E-05 4.727031712 -0.12298362 TGYES(ph)GEYEMLGEGLGVK ddPTM_HeLa_CUDC101_4h_R1 3 TGYESGEYEMLGEGLGVK 18 0 Q13561;Q13561-3;Q13561-2;F8VW18;F8W1I6;H0YHL1;F8VX93;F8VRV7 Q13561 DCTN2 Dynactin subunit 2 1 0 T(0.045)GYES(0.946)GEY(0.01)EMLGEGLGVK;T(0.182)GYES(0.818)GEYEMLGEGLGVK;T(0.005)GYES(0.995)GEYEMLGEGLGVK ;; 179.66 3.28E-08 27085000 4006.22 3718.69 3911.55 3855.47 4351.11 4180.86 3376.41 3135.94 4277.59 4030.63 TRUE FALSE FALSE 3536.616965 3833.258431 4123.020225 4012.712731 4030.137284 4101.117061 3506.639265 3492.922734 4101.26593 4006.655634 0.882685533 0.956722709 1.029042823 1.001511759 1.005860661 1.023576128 0.875203558 0.871780121 1.023613284 1 11.9681828 -4.726699708 21.42574055 0.963064603 0.873490499 0.410072582 0.04781391 40.66477078 25077.19605 0.008183714 0.030612004 1.88E-05 4.726699708 -0.089574104 GS(ph)SPTPPCSPVQPSK ddPTM_HeLa_CUDC101_4h_R1 1 GSSPTPPCSPVQPSK 15 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 0 GS(0.472)S(0.472)PT(0.055)PPCSPVQPSK 113.43 0.00034376 0 930.97 1042.3 961.56 884.36 1039.7 854.46 637.21 503.56 932.36 938.86 TRUE FALSE FALSE 821.8431079 1074.412028 1013.544842 920.4280233 963.0034024 838.1625991 661.7874032 560.8832349 893.9277262 933.275619 0.880600641 1.151226932 1.086008058 0.986233868 1.031853166 0.898086891 0.709101781 0.600983486 0.957838936 1 9.866159397 -4.726518893 2.315885509 0.977818798 0.609983705 0.77815137 0.074918047 0.138743431 1.40077313 0.012860416 0.069793399 1.88E-05 4.726518893 -0.367835093 KSYESSEDCSEAAGS(ph)PARK ddPTM_HeLa_CUDC101_4h_R1 1 KSYESSEDCSEAAGSPARK 19 2 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 KSYESSEDCSEAAGS(1)PARK 95.223 0.0019498 13754000 1679.3 1609.4 2032.9 1770.7 1698.9 1686.4 1396.4 1246.7 1926.8 1803.5 TRUE FALSE FALSE 1482.455 1658.983706 2142.804723 1842.9168 1573.575532 1654.23473 1450.259616 1388.619289 1847.376488 1792.772702 0.826906277 0.925373141 1.19524618 1.027970137 0.877732872 0.922724185 0.808947846 0.774565168 1.03045773 1 10.80797687 -4.726002361 1.773107605 0.944642477 0.765008201 0.324595808 0.099432893 0.520886905 2.808312805 0.016535999 0.116050519 1.88E-05 4.726002361 -0.179634276 TLPMS(ph)PPSER ddPTM_HeLa_CUDC101_4h_R1 1 TLPMSPPSER 10 0 O15062 O15062 ZBTB5 Zinc finger and BTB domain-containing protein 5 1 0 T(0.01)LPMS(0.868)PPS(0.122)ER 83.226 0.038704 8688700 1924.4 1617.7 1796.4 1594.8 1998.8 2008.5 1425 1438.9 1860.1 1750.2 TRUE FALSE FALSE 1698.824749 1667.53942 1893.518818 1659.842837 1851.352506 1970.191209 1479.962727 1602.69856 1783.425891 1739.789733 0.976454061 0.958471813 1.088360727 0.954047955 1.064124286 1.132430645 0.850656088 0.921202447 1.025081283 1 10.76469724 -4.72454586 24.99979908 1.00416945 0.885929136 0.436521243 0.059536066 129.8982764 88019.93949 0.008012533 0.029978586 1.89E-05 4.72454586 -0.118240315 RKADTTTPTPTAILAPGS(ph)PAS(ph)PPGSLEPK ddPTM_HeLa_CUDC101_4h_R1 2 RKADTTTPTPTAILAPGSPASPPGSLEPK 29 2 P25440-2;P25440;A0A0G2JK44;A0A140T9E9;H0Y6K2;P25440-3;P25440-4;A0A0G2JHL0;A0A140T9V2;A0A140T9F7;U3KQA6;E9PIQ3;H0YDJ7;U3KPW0 P25440-2 BRD2 Bromodomain-containing protein 2 2 0 RKADT(0.018)T(0.139)T(0.111)PT(0.111)PT(0.282)AILAPGS(0.765)PAS(0.568)PPGS(0.006)LEPK;RKADTTTPTPT(0.001)AILAPGS(0.98)PAS(0.984)PPGS(0.034)LEPK ; 66.793 0.00029459 18786000 1852.63 1432.59 1669.11 1657.91 1696.36 1629.56 1260.64 1097.2 1414.41 1690.86 TRUE FALSE FALSE 1635.46752 1476.7264 1759.347135 1725.526736 1571.222902 1598.478858 1309.263307 1222.100813 1356.107421 1680.80269 0.973027667 0.87858403 1.046730319 1.026608743 0.934805086 0.951021121 0.778951221 0.727093561 0.806821306 1 10.71493466 -4.723863354 2.086650898 0.983380508 0.719609256 0.531247854 0.071437006 0.10815664 0.860064374 0.006305015 0.037753988 1.89E-05 4.723863354 -0.263771252 S(ph)AVEAQNEVTENPK ddPTM_HeLa_CUDC101_4h_R1 2 SAVEAQNEVTENPK 14 0 Q32MZ4-3;Q32MZ4-2;Q32MZ4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 S(1)AVEAQNEVTENPK;S(0.999)AVEAQNEVT(0.001)ENPK ; 256.71 7.21E-70 4578400 2917 2274.4 2523.1 2657.8 3032 2544 1917.22 1699.56 2719.9 2203.5 TRUE FALSE FALSE 2575.073682 2344.471568 2659.506418 2766.196572 2808.335401 2495.477439 1991.167818 1893.031041 2607.784571 2190.393484 1.175621504 1.070342651 1.214168339 1.262876553 1.28211457 1.139282716 0.909045718 0.864242454 1.1905553 1 11.09697434 -4.72359905 5.579836006 1.123275929 0.879842615 0.583264829 0.088969809 0.132182359 10.18829533 0.015539652 0.058478115 1.89E-05 4.72359905 -0.243433314 IS(ph)S(ph)KSPGHMVILDQTK ddPTM_HeLa_CUDC101_4h_R1 1 ISSKSPGHMVILDQTK 16 1 Q9NWH9;Q9NWH9-3 Q9NWH9 SLTM SAFB-like transcription modulator 2 0 IS(0.678)S(0.678)KS(0.644)PGHMVILDQTK 73.315 0.030077 69697000 2891.7 2824.5 3029.5 2387 2918.3 2526.5 2145.7 1817.8 2632 3017.8 TRUE FALSE FALSE 2552.73931 2911.519497 3193.283934 2484.352177 2703.022823 2478.311222 2228.460368 2024.731004 2523.507846 2999.849991 0.850955653 0.97055503 1.064481205 0.828158803 0.901052663 0.82614505 0.742857268 0.674944084 0.841211345 1 11.55067464 -4.723451156 0.879407712 0.938204485 0.616325457 0.61612496 0.069236394 0.659905724 0.573872494 0.011977449 0.174356279 1.89E-05 4.723451156 -0.321879028 TTWGDGGENS(ph)PCNVVSK ddPTM_HeLa_CUDC101_4h_R1 1 TTWGDGGENSPCNVVSK 17 0 H3BM38;H3BV99;H3BP15;H3BQY9;O00161 H3BM38 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 1 0 TTWGDGGENS(1)PCNVVSK 221.79 1.09E-32 14960000 1780 1444.7 1184.8 1482 1418.1 1341.2 762.02 571.55 1189.5 1168.2 TRUE FALSE FALSE 1571.351098 1489.209495 1248.853872 1542.442366 1313.489588 1315.618845 791.4113667 636.6129417 1140.468307 1161.251494 1.353153133 1.282417721 1.075437903 1.32825867 1.131098297 1.132931885 0.681515908 0.548212807 0.982102768 1 10.18146474 -4.722831942 3.08440899 1.182008756 0.565727132 0.764636221 0.121973442 0.097610115 1.832938227 0.020174669 0.090063706 1.89E-05 4.722831942 -0.616281624 HS(ph)STGDSADAGPPAAGSAR ddPTM_HeLa_CUDC101_4h_R1 1 HSSTGDSADAGPPAAGSAR 19 0 F5H1N7;Q6ZU35 F5H1N7 KIAA1211 Uncharacterized protein KIAA1211 1 0 HS(0.616)S(0.383)T(0.001)GDSADAGPPAAGSAR 205.98 4.35E-35 0 1595.5 1115 1332.9 991.48 1899.8 1354.6 1056.1 937.09 1390.5 1219.6 TRUE FALSE FALSE 1408.477909 1149.351828 1404.960606 1031.91684 1759.655539 1328.763262 1096.834131 1043.764538 1333.183001 1212.345765 1.161779048 0.948039628 1.158877811 0.851173708 1.45144693 1.096026645 0.904720553 0.860946248 1.099672255 1 10.2435855 -4.72280159 5.525114918 1.086486984 0.876616731 0.241614913 0.150650734 0.199467085 14.86118998 0.020107075 0.075813892 1.89E-05 4.72280159 -0.209870253 VSPSTSYT(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 2 VSPSTSYTPSR 11 0 Q9BTE3;Q9BTE3-2 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein 1 0 VSPSTSYT(0.998)PS(0.002)R;VSPSTSYT(0.995)PS(0.004)R ; 166.11 0.00016597 160125000 4085.4 3416.9 3293 3414.5 4001.2 3461.5 2639.4 2241.1 3238.3 3381.7 TRUE FALSE FALSE 3606.515605 3522.170639 3471.029541 3553.758069 3706.039448 3395.477655 2741.202542 2496.217765 3104.815903 3361.585498 1.072861484 1.047770655 1.032557269 1.057167242 1.102467705 1.010082194 0.8154493 0.742571553 0.923616521 1 11.71492613 -4.721278517 3.174307422 1.042385874 0.755910814 0.830769518 0.045968 0.049324568 0.984159893 0.004850919 0.021371402 1.90E-05 4.721278517 -0.28647506 KQS(ph)AGPNS(ph)PTGGGGGGGSGGTR ddPTM_HeLa_CUDC101_4h_R1 2 KQSAGPNSPTGGGGGGGSGGTR 22 1 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 2 0 KQS(1)AGPNS(0.993)PT(0.007)GGGGGGGSGGTR;KQS(1)AGPNS(0.984)PT(0.015)GGGGGGGSGGTR ; 87.025 0.00032953 9776300 2785.1 2119.79 2108.98 2155.49 2268.63 2482.8 1698.4 1588.34 1812.02 1744.02 TRUE FALSE FALSE 2458.6348 2185.098217 2222.997838 2243.400199 2101.277685 2435.444727 1763.907857 1769.150205 1737.327769 1733.646491 1.418186933 1.260405872 1.282267088 1.294035555 1.212056607 1.404810461 1.017455326 1.020479212 1.00212343 1 10.75959403 -4.721175526 24.46740107 1.231015295 1.018966296 0.29286707 0.133724965 147.2272617 89464.00307 0.022626644 0.084658664 1.90E-05 4.721175526 -0.212048999 DSSLCVSGETLAAGTS(ph)SPKTEGK ddPTM_HeLa_CUDC101_4h_R1 1 DSSLCVSGETLAAGTSSPKTEGK 23 1 F8WF45;A0A2R8Y7M0;P82094;P82094-2 F8WF45 TMF1 TATA element modulatory factor 1 0 DSSLCVSGETLAAGT(0.128)S(0.636)S(0.234)PKT(0.001)EGK 106.1 7.31E-06 23468000 2705.3 2457.7 2461.2 2158.7 2191.7 2424.5 1805.4 1615.8 2501.6 2180.4 TRUE FALSE FALSE 2388.188835 2533.418824 2594.259917 2246.741117 2030.022657 2378.256702 1875.034883 1799.736141 2398.482989 2167.430884 1.10185236 1.168857952 1.196928555 1.036591816 0.93660318 1.097269915 0.865095582 0.830354571 1.106601833 1 11.08177027 -4.720717669 6.597446477 1.062170297 0.843695221 0.604069703 0.074254317 0.113172445 12.69959309 0.011405401 0.042621412 1.90E-05 4.720717669 -0.218475076 VMMPS(ph)RT(ph)NLATGIPS(ph)S(ph)KVK ddPTM_HeLa_CUDC101_4h_R1 1 VMMPSRTNLATGIPSSKVK 19 2 Q96A57-2 Q96A57-2 4 0 VMMPS(0.667)RT(0.667)NLAT(0.667)GIPS(1)S(1)KVK 47.568 0.039642 17970000 487.66 408.19 416.57 359.86 579.69 455.59 529.52 502.3 796.92 470.5 TRUE FALSE FALSE 430.497234 420.7658501 439.0910343 374.5366462 536.9274236 446.9003798 549.9437638 559.4798016 764.0706203 467.7014451 0.920453077 0.899646248 0.938827619 0.800802842 1.148013181 0.955524907 1.175843628 1.196232784 1.633671712 1 8.869444076 -4.719918271 1.138977007 0.949205607 1.247106214 0 0.231800122 0.482106553 0.822745058 0.012259583 0.140534697 1.91E-05 4.719918271 0.297900608 MSPNETLFLES(ph)TNK ddPTM_HeLa_CUDC101_4h_R1 2 MSPNETLFLESTNK 14 0 Q9HB90;Q9NQL2 Q9HB90 RRAGC;RRAGD Ras-related GTP-binding protein C;Ras-related GTP-binding protein D 1 0 MSPNET(0.017)LFLES(0.761)T(0.222)NK;MSPNETLFLES(0.975)T(0.025)NK ; 225.6 6.38E-33 154857000 10282.8 6290.5 6585.6 7601.5 7856.7 8235.4 10013.3 9910.9 5935 7725.5 TRUE FALSE FALSE 9077.465772 6484.302849 6941.637456 7911.522026 7277.126894 8078.323466 10399.51634 11039.11679 5690.356788 7679.548382 1.182031198 0.844359919 0.903912198 1.030206678 0.947598287 1.051926893 1.354183321 1.437469529 0.740975446 1 12.90680576 -4.719095895 4.068412596 1.040957967 1.416468749 0.587029873 0.133659456 0.10582125 3.63865838 0.016371255 0.065545403 1.91E-05 4.719095895 0.375510782 SQPPGEDSDTDVDDDS(ph)RPPGRPAEVHLER ddPTM_HeLa_CUDC101_4h_R1 1 SQPPGEDSDTDVDDDSRPPGRPAEVHLER 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.004)QPPGEDS(0.041)DT(0.011)DVDDDS(0.944)RPPGRPAEVHLER 45.489 0.016777 28654000 596.08 713.11 785.37 522.81 853.66 756.74 480 423.96 752.79 779.06 TRUE FALSE FALSE 526.208406 735.0800739 827.8294778 544.1324516 790.6872025 742.3064453 498.5137608 472.2218927 721.7596776 774.4261165 0.679481741 0.949193291 1.068958627 0.702626681 1.020997595 0.958524551 0.643720234 0.609770103 0.931992946 1 9.596983796 -4.718380299 9.036177122 0.876276244 0.625102255 0.432963932 0.12570077 0.296992805 57.3185623 0.020770337 0.077469032 1.91E-05 4.718380299 -0.251173989 S(ph)TPLSQPSANGVQTEGLDYDR ddPTM_HeLa_CUDC101_4h_R1 1 STPLSQPSANGVQTEGLDYDR 21 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 S(0.866)T(0.134)PLSQPSANGVQTEGLDYDR 200.74 5.46E-19 28278000 1092.9 1124.1 952.61 965.57 1119.6 853.47 531.08 367 1056.1 772.29 TRUE FALSE FALSE 964.7919187 1158.732189 1004.110978 1004.950118 1037.009339 837.1914817 551.5639335 408.7777965 1012.567111 767.6963847 1.256736306 1.50936257 1.307953246 1.309046308 1.350806594 1.090524195 0.718466238 0.53247326 1.31896819 1 9.584392044 -4.717911941 2.758748824 1.196794261 0.560542681 0.757649021 0.143706488 0.13396528 1.97662043 0.025708438 0.123759994 1.91E-05 4.717911941 -0.63625158 (ac)AS(ph)ESDTEEFYDAPEDVHLGGGY(ph)PVGSPGK ddPTM_HeLa_CUDC101_4h_R1 1 ASESDTEEFYDAPEDVHLGGGYPVGSPGK 29 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4 Q5JSH3-2 WDR44 WD repeat-containing protein 44 2 0 AS(0.649)ES(0.148)DT(0.176)EEFY(0.027)DAPEDVHLGGGY(0.904)PVGS(0.096)PGK 79.36 5.52E-07 5358100 2050.2 2298.5 1998.6 1760.2 2502.5 2026.3 2123 1899.4 2362 2334.2 TRUE FALSE FALSE 1809.878664 2369.314061 2106.650361 1831.988564 2317.895561 1987.651704 2204.884821 2115.620018 2264.63736 2320.316075 0.780013845 1.021116945 0.907915255 0.789542677 0.998956817 0.856629718 0.950251927 0.91178096 0.976003823 1 11.18010563 -4.715958266 24.99361247 0.901433161 0.931016383 0 0.083164174 639.2514867 351283.6369 0.013156789 0.049227849 1.92E-05 4.715958266 0.029583222 DSAPS(ph)TPTSPTEFLTPGLR ddPTM_HeLa_CUDC101_4h_R1 1 DSAPSTPTSPTEFLTPGLR 19 0 Q9NZJ4-2;Q9NZJ4 Q9NZJ4-2 SACS Sacsin 1 0 DSAPS(0.941)T(0.039)PT(0.007)S(0.011)PT(0.002)EFLTPGLR 138.2 4.99E-05 18757000 1705.2 1128.3 1362.5 1747.7 1743.3 2095.2 2381.4 2398.3 1043.4 1281.1 TRUE FALSE FALSE 1505.319041 1163.061586 1436.160871 1818.97876 1614.700232 2055.237551 2473.251396 2671.312778 1000.39061 1273.47996 1.182051613 0.913293983 1.127745168 1.428352873 1.267943181 1.613875063 1.942120389 2.097648068 0.785556618 1 10.31456054 -4.715085928 0.655058713 1.068612476 2.49008301 0.889749217 0.136883574 0.382151391 0.158479734 0.020100363 0.360003825 1.93E-05 4.715085928 1.421470534 up SPS(ph)PPLPTHIPPEPPRT(ph)PPFPAK ddPTM_HeLa_CUDC101_4h_R1 2 SPSPPLPTHIPPEPPRTPPFPAK 23 1 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 2 0 S(0.388)PS(0.551)PPLPT(0.062)HIPPEPPRT(1)PPFPAK;S(0.343)PS(0.504)PPLPT(0.153)HIPPEPPRT(1)PPFPAK ; 103.16 2.32E-05 24003000 9927 9697.9 9071.1 9132.3 10127.7 10500.1 9464.5 9478.5 10267.7 9874.4 TRUE FALSE FALSE 8763.372108 9996.680804 9561.511105 9504.754667 9380.599748 10299.82809 9829.548935 10557.49413 9844.46106 9815.66663 0.892794391 1.018441353 0.974107156 0.968324926 0.955676278 1.049325377 1.001414301 1.075575865 1.002933518 1 13.26087054 -4.713940547 0.692705533 0.954338216 1.093499454 0.307600862 0.040122401 1.503144248 0.713032764 0.008274933 0.144651439 1.93E-05 4.713940547 0.139161238 RGSS(ph)GSVDETLFALPAASEPVIR ddPTM_HeLa_CUDC101_4h_R1 1 RGSSGSVDETLFALPAASEPVIR 23 1 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 0 RGS(0.311)S(0.524)GS(0.166)VDETLFALPAASEPVIR 156.02 6.64E-08 5076400 1412.7 1027.7 1024.2 1040.9 1100.1 1278.6 1414.1 1366.6 1005.9 1464 TRUE FALSE FALSE 1247.105448 1059.362219 1079.57135 1083.352401 1018.947815 1254.212835 1468.642311 1522.16822 964.4363762 1455.292063 0.856945131 0.72793788 0.74182453 0.744422669 0.700167232 0.861828953 1.009173587 1.04595377 0.662709844 1 10.507093 -4.713843614 5.017002124 0.868978912 1.034159238 0.21817777 0.118456107 0.245028346 13.32279845 0.01837491 0.070805062 1.93E-05 4.713843614 0.165180326 GNSRPGTPS(ph)AEGGSTSSTLR ddPTM_HeLa_CUDC101_4h_R1 1 GNSRPGTPSAEGGSTSSTLR 20 1 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 1 0 GNS(0.005)RPGT(0.009)PS(0.978)AEGGS(0.004)T(0.002)S(0.001)STLR 62.678 0.011438 181510000 1507.6 1022.6 1091.1 1235.6 1473.9 1093.4 1009.1 1046.9 1297.3 1254.6 TRUE FALSE FALSE 1330.881413 1054.105094 1150.088166 1285.993109 1365.173333 1072.545217 1048.021325 1166.074864 1243.824745 1247.137583 1.06714883 0.845219572 0.922182269 1.031155765 1.094645332 0.860005529 0.840341386 0.935000981 0.997343646 1 10.28440492 -4.713611474 0.441478199 1.022877263 0.805655749 0.109936744 0.08289852 3.848765247 0.655796965 0.022483502 0.406428434 1.93E-05 4.713611474 -0.217221514 SFS(ph)PEER ddPTM_HeLa_CUDC101_4h_R1 2 SFSPEER 7 0 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 S(0.001)FS(0.999)PEER;SFS(1)PEER ; 106.68 0.014977 49391000 4692.8 4376.6 4351.6 4107.8 4163.5 3962.5 3477.4 2881.6 4753.4 4548.5 TRUE FALSE FALSE 4142.717098 4511.437858 4586.860659 4275.333839 3856.3669 3886.921914 3611.524483 3209.629696 4557.46284 4521.44532 0.916237354 0.997786668 1.014467794 0.945567963 0.852905792 0.85966359 0.798754431 0.709868077 1.007965931 1 12.1425683 -4.713209616 0.733560653 0.967755281 0.649954747 0.861056444 0.036491986 0.541656985 0.29561383 0.007332162 0.124269318 1.94E-05 4.713209616 -0.317800534 AYFFT(ph)KGEVHS(ph)MFCK ddPTM_HeLa_CUDC101_4h_R1 1 AYFFTKGEVHSMFCK 15 1 H7C2P8;E7ETE0;B3KW44 H7C2P8 METTL8 2 0 AY(0.12)FFT(0.88)KGEVHS(1)MFCK 62.528 0.034571 5556500 2501 1954.7 2070.9 2043.7 2436.9 1974.4 2391.5 2207.2 1985.3 2276.5 TRUE FALSE FALSE 2207.836571 2014.92199 2182.859118 2127.05092 2257.134742 1936.74161 2483.740956 2458.458726 1903.465094 2262.959277 0.975641318 0.89039251 0.9646038 0.939942199 0.997426142 0.855844659 1.097563258 1.086391059 0.841139791 1 11.14399491 -4.712993672 24.99998621 0.969616667 1.091977811 0.43612059 0.061990155 69.39168021 35807.92807 0.006558896 0.024541047 1.94E-05 4.712993672 0.122361144 SVS(ph)TPSEAGSQDSGDGAVGSR ddPTM_HeLa_CUDC101_4h_R1 1 SVSTPSEAGSQDSGDGAVGSR 21 0 E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E9PGG1;E7ETL8;E7ESD3;E7EMU4;Q13409;Q13409-7;Q13409-5;E7ET01;E7ERR6;E7EUM4;E7ERH4 E7EQL5 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 0 SVS(0.495)T(0.495)PS(0.009)EAGSQDSGDGAVGSR 306.2 1.43E-146 32679000 1704.6 1518.3 1448.2 1586.8 1556.8 1583 1100.4 966.83 1532.3 1405.7 TRUE FALSE FALSE 1504.789372 1565.077023 1526.494073 1651.516563 1441.957966 1552.806912 1142.842797 1076.890019 1469.137945 1397.338834 1.076896552 1.120041171 1.092429435 1.181901285 1.031931505 1.111260114 0.817870919 0.770672075 1.05138275 1 10.44846618 -4.71263753 6.383827299 1.061104258 0.78810396 0.82578915 0.052345554 0.069657191 6.409350374 0.008545905 0.032220529 1.94E-05 4.71263753 -0.273000298 QSQESLPGAVS(ph)PLSGR ddPTM_HeLa_CUDC101_4h_R1 2 QSQESLPGAVSPLSGR 16 0 Q69YU3 Q69YU3 ANKRD34A Ankyrin repeat domain-containing protein 34A 1 0 QSQESLPGAVS(0.928)PLS(0.072)GR;QSQESLPGAVS(1)PLSGR ; 164.01 3.35E-05 33232000 4908 3821 3589.8 3512.7 4145.6 3736.2 3421.3 3031 3401 3548.7 TRUE FALSE FALSE 4332.69168 3938.720481 3783.875447 3655.963089 3839.787347 3664.93821 3553.260687 3376.036788 3260.80934 3527.592175 1.22822919 1.116546439 1.072651049 1.03639052 1.088500926 1.038934783 1.007276497 0.957037158 0.924372541 1 11.78446807 -4.712378663 0.743276347 1.106599397 0.922959101 0.050796401 0.079840527 1.860185185 1.048205684 0.014793592 0.249083206 1.94E-05 4.712378663 -0.183640296 S(ph)LDDLSAPPHHR ddPTM_HeLa_CUDC101_4h_R1 2 SLDDLSAPPHHR 12 0 A6NKD9 A6NKD9 CCDC85C Coiled-coil domain-containing protein 85C 1 0 S(0.999)LDDLS(0.001)APPHHR;S(1)LDDLSAPPHHR ; 130.61 0.0010067 11708900 5759 4646.5 4753.7 4497 6331.3 5575.2 6287.7 6139 5223 5629.7 TRUE FALSE FALSE 5083.93875 4789.653158 5010.699401 4680.407098 5864.252613 5468.862349 6530.218695 6837.838945 5007.705729 5596.214294 0.908460342 0.855873794 0.895373039 0.836352372 1.047896364 0.977243197 1.166899327 1.221868675 0.894838093 1 12.45023549 -4.707844289 1.459876715 0.937731588 1.253756491 0.757813947 0.061075183 0.249474875 0.810773987 0.00998246 0.089895874 1.96E-05 4.707844289 0.316024903 AGFNYESPS(ph)KGGNFPSFPHDEVTDR ddPTM_HeLa_CUDC101_4h_R1 2 AGFNYESPSKGGNFPSFPHDEVTDR 25 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;H0YC29;E5RJ97 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 AGFNY(0.154)ES(0.143)PS(0.641)KGGNFPS(0.061)FPHDEVT(0.001)DR;AGFNY(0.181)ES(0.145)PS(0.596)KGGNFPS(0.077)FPHDEVTDR ; 58.92 0.0028874 22756000 1949.64 1763.89 1509.69 1832.7 2009.76 1831.55 1383.76 1190.82 1587.24 1896.92 TRUE FALSE FALSE 1721.106155 1818.23336 1591.308408 1907.445428 1861.504009 1796.616235 1437.132087 1326.378135 1521.813295 1885.637035 0.912745201 0.964254162 0.843910243 1.01156553 0.987201659 0.952790066 0.762146723 0.70341116 0.807055264 1 10.88083628 -4.705122789 3.850056169 0.956105988 0.716792988 0.594175891 0.065668836 0.074920629 2.201993162 0.007018134 0.029044256 1.97E-05 4.705122789 -0.239313 S(ph)SLETLEDIEENAPLRR ddPTM_HeLa_CUDC101_4h_R1 5 SSLETLEDIEENAPLRR 17 1 Q8TDN4;Q8TDN4-2;V9GYB4 Q8TDN4 CABLES1 CDK5 and ABL1 enzyme substrate 1 1 0 S(0.434)S(0.434)LET(0.132)LEDIEENAPLRR;S(0.485)S(0.485)LET(0.03)LEDIEENAPLRR;S(0.483)S(0.117)LET(0.4)LEDIEENAPLRR;S(0.499)S(0.499)LET(0.003)LEDIEENAPLRR;S(0.915)S(0.046)LET(0.039)LEDIEENAPLRR ;;;; 130.01 0.00013977 26481500 2215.09 2153.38 1631.49 1748.5 2239.29 2027.64 1719.36 1555.61 1944.67 2022.41 TRUE FALSE FALSE 1955.440508 2219.723085 1719.693284 1819.811388 2074.102038 1988.966145 1785.676291 1732.694354 1864.509879 2010.380615 0.972671788 1.104130764 0.855406818 0.905207389 1.031696198 0.989348052 0.888227969 0.861873787 0.927441234 1 10.97325295 -4.704461879 4.664542126 0.983322543 0.869418115 0.255607715 0.065655574 0.172955235 7.542882222 0.008537374 0.033601756 1.97E-05 4.704461879 -0.113904428 DANVSGTLVSSST(ph)LEK ddPTM_HeLa_CUDC101_4h_R1 1 DANVSGTLVSSSTLEK 16 0 Q96IZ0 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein 1 0 DANVS(0.001)GT(0.001)LVS(0.24)S(0.145)S(0.145)T(0.468)LEK 94.45 0.030672 8453300 1465.6 1200 1314 1403.5 1761.4 1398.2 1085.9 937.69 1462.8 1417.3 TRUE FALSE FALSE 1293.80459 1236.970578 1385.038815 1460.740796 1631.465031 1371.531665 1127.783527 1044.432839 1402.502765 1408.869837 0.918327979 0.877987835 0.983085008 1.036817425 1.157995571 0.973497785 0.800488092 0.741326709 0.995480724 1 10.46032261 -4.702625192 4.182140062 0.97657478 0.757332901 0.604295467 0.071468394 0.124435613 4.302872431 0.011192149 0.04526828 1.98E-05 4.702625192 -0.219241879 (ac)AEAS(ph)PHPGR ddPTM_HeLa_CUDC101_4h_R1 4 AEASPHPGR 9 0 U3KQF4;K7EIY6;Q9BV68 U3KQF4 RNF126 E3 ubiquitin-protein ligase RNF126 1 0 AEAS(1)PHPGR;AEAS(1)PHPGR;AEAS(1)PHPGR;AEAS(1)PHPGR ;;; 92.538 0.0005584 20647400 311.16 515.45 130.8 427.27 165.6 168.699 259.87 0 229.435 373.43 TRUE FALSE FALSE 274.6862965 531.3304035 137.8714436 444.6959174 153.3840179 165.4813476 269.893273 0 219.9775922 371.2088218 0.739977825 1.431351769 0.371412088 1.197966997 0.413201435 0.44579045 0.727065892 0 0.592597965 1 8.536087186 -4.702603632 0.599731248 0.908725704 2.74E-13 0.328569557 0.330914104 1.843177729 0.614908195 0.055226543 1.040229451 1.98E-05 4.702603632 -0.908725704 HSLDS(ph)DEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR ddPTM_HeLa_CUDC101_4h_R1 3 HSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR 42 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 HS(0.039)LDS(0.961)DEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR;HS(0.03)LDS(0.959)DEEEDDDDGGS(0.005)S(0.004)KY(0.001)DILAS(0.001)EDVEGQEAATLPSEGGVR;HS(0.043)LDS(0.937)DEEEDDDDGGS(0.008)S(0.008)KY(0.002)DILAS(0.003)EDVEGQEAATLPSEGGVR ;; 77.321 2.44E-08 256724000 1030.8 675.86 561.7 578.32 901.76 754.03 832.9 795.32 1068.93 702.6 TRUE FALSE FALSE 909.9711866 696.6824455 592.067201 601.9063893 835.2389614 739.648134 865.025232 885.856014 1024.868253 698.420904 1.302897982 0.997510873 0.847722624 0.861810387 1.195896281 1.059029204 1.238544303 1.268369845 1.467407758 1 9.44795293 -4.702589933 6.084131357 1.093621439 1.258177254 0.113655368 0.181028281 0.327639003 23.96004764 0.023861653 0.090834461 1.98E-05 4.702589933 0.164555816 TLNAETPKSS(ph)PLPAK ddPTM_HeLa_CUDC101_4h_R1 1 TLNAETPKSSPLPAK 15 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 TLNAETPKS(0.079)S(0.921)PLPAK 115.66 0.0008293 347230000 2945.1 3479.1 2706.1 3025.9 2875.5 3003.8 3562.6 3585.1 3536.3 2974 TRUE FALSE FALSE 2599.879842 3586.286947 2852.399952 3149.309281 2663.380094 2946.50752 3700.010675 3993.213293 3390.532217 2956.310516 0.879433953 1.213095488 0.964851269 1.065283658 0.900913514 0.996684044 1.251563615 1.350742174 1.146879598 1 11.5295821 -4.702393731 3.247211785 0.970118755 1.332859037 0.491467461 0.106716223 0.107998913 2.226415446 0.013516587 0.060349162 1.98E-05 4.702393731 0.362740282 DLES(ph)LT(ph)S(ph)YS(ph)S(ph)FK ddPTM_HeLa_CUDC101_4h_R1 1 DLESLTSYSSFK 12 0 Q9Y217-2 Q9Y217-2 MTMR6 Myotubularin-related protein 6 5 0 DLES(0.9)LT(0.763)S(0.811)Y(0.763)S(0.811)S(0.952)FK 58.098 0.026331 19187000 397.55 252.58 438.93 259.17 262.37 340.19 396.65 412.26 458.4 272.11 TRUE FALSE FALSE 350.9497916 260.3616904 462.6598835 269.7400728 243.0154878 333.7014425 411.9489234 459.190012 439.504558 270.4914776 1.297452307 0.962550439 1.710441629 0.997222076 0.898421976 1.233685606 1.52296452 1.697613603 1.624836989 1 8.07943933 -4.701078241 2.895243788 1.146283537 1.666291805 0.244239669 0.266919484 0.19374534 3.143606044 0.031416774 0.150215722 1.99E-05 4.701078241 0.520008268 TQSRPGGPPNPPGPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 TQSRPGGPPNPPGPSPK 17 1 B9EGQ5;A0A669KBG4;M0QXA7;A0A669KBH9;A0A2R8YFV2;A0A669KAV7;O95785-4;O95785-3;O95785;O95785-2 B9EGQ5 WIZ Protein Wiz 1 0 TQSRPGGPPNPPGPS(1)PK;TQSRPGGPPNPPGPS(1)PK ; 71.042 0.013582 43407000 5777.9 5884.8 5557.4 5916.9 5939.6 5391 4119.7 3319.2 6330.5 6191.5 TRUE FALSE FALSE 5100.623321 6066.103713 5857.849854 6158.216757 5501.447541 5288.175657 4278.598209 3697.044311 6069.554111 6154.672683 0.828739981 0.985609475 0.951772768 1.000575835 0.89386517 0.859213143 0.695178839 0.600689021 0.98617009 1 12.58746642 -4.700645075 1.687157072 0.930329835 0.585062911 0.838440308 0.052705443 0.186028034 0.871492889 0.010139041 0.079130953 1.99E-05 4.700645075 -0.345266924 AAKPGPAEAPS(ph)PTASPSGDASPPATAPYDPR ddPTM_HeLa_CUDC101_4h_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 AAKPGPAEAPS(0.727)PT(0.272)AS(0.001)PSGDASPPATAPYDPR 110.03 4.61E-11 274710000 2116.3 1848.7 2131.6 1894.1 2074 1985.9 2551.6 2534.2 2053.3 2167.6 TRUE FALSE FALSE 1868.230522 1905.656256 2246.840744 1971.349585 1921.005152 1948.022266 2650.016067 2822.683084 1968.662105 2154.707019 0.867046195 0.884415486 1.042759282 0.914903775 0.891538912 0.904077561 1.229873038 1.310007839 0.913656515 1 11.073276 -4.700514116 4.750296571 0.93292896 1.287370984 0.870670391 0.053012415 0.057733839 2.553160347 0.00887175 0.034908012 1.99E-05 4.700514116 0.354442024 S(ph)GGGAGSNGSVLDPAER ddPTM_HeLa_CUDC101_4h_R1 2 SGGGAGSNGSVLDPAER 17 0 Q15149-3;Q15149-2;H0YDN1;E9PMV1 Q15149-3 PLEC Plectin 1 0 S(1)GGGAGSNGSVLDPAER;S(1)GGGAGSNGSVLDPAER ; 211.67 8.05E-24 71057000 2541.5 2375.2 1757.37 1892.19 2237.1 1883.32 1406.79 1093.34 2018.78 1769.65 TRUE FALSE FALSE 2243.589223 2448.377097 1852.378738 1969.361687 2072.07359 1847.398809 1461.050362 1217.801406 1935.565034 1759.124043 1.275401375 1.391816061 1.053012006 1.119512689 1.177900784 1.050181092 0.830555621 0.692277165 1.100300483 1 10.7806415 -4.699741686 1.912777926 1.149540362 0.6847773 0.696357458 0.105469948 0.217411957 1.388271467 0.019229573 0.13158579 2.00E-05 4.699741686 -0.464763061 VQS(ph)PEPPAPER ddPTM_HeLa_CUDC101_4h_R1 1 VQSPEPPAPER 11 0 A0A0G2JMS7;A0A0G2JNZ2;A0A669KB89;Q14160-2;Q14160;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 0 VQS(1)PEPPAPER 86.288 0.030111 17072000 2093.1 1626.8 1548.1 1806.1 1509.6 1644.1 1103.3 1209.3 1723.9 1923.5 TRUE FALSE FALSE 1847.749991 1676.91978 1631.794969 1879.760565 1398.239816 1612.741532 1145.854651 1346.961824 1652.840112 1912.058936 0.966366651 0.87702306 0.853422945 0.983108067 0.731274433 0.843458066 0.599277893 0.704456227 0.86442948 1 10.90091128 -4.699378915 0.35656741 1.000201133 0.446238107 0.566398537 0.081262535 1.55951499 0.172633485 0.022049066 0.353341783 2.00E-05 4.699378915 -0.553963027 SLGSVQAPS(ph)YGAR ddPTM_HeLa_CUDC101_4h_R1 2 SLGSVQAPSYGAR 13 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 SLGS(0.001)VQAPS(0.999)YGAR;SLGS(0.06)VQAPS(0.94)YGAR ; 108.66 0.0050086 207030000 2343.3 2126.31 2197.38 2416.2 2293.9 2506.3 2413.2 2367 2667.5 1977.96 TRUE FALSE FALSE 2068.621926 2191.819091 2316.17701 2514.74308 2124.683567 2458.496503 2506.277932 2636.449712 2557.544521 1966.195006 1.052093978 1.114751632 1.17799964 1.278989659 1.080606736 1.250382844 1.274684314 1.340889232 1.300758324 1 10.9411907 -4.697484854 0.219244504 0.965469755 1.567999283 0.02577175 0.111048437 3.273846147 0.163029474 0.060571519 0.542994774 2.01E-05 4.697484854 0.602529528 VNGDAS(ph)PAAAESGAK ddPTM_HeLa_CUDC101_4h_R1 5 VNGDASPAAAESGAK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 VNGDAS(1)PAAAESGAK;VNGDAS(0.811)PAAAES(0.189)GAK;VNGDAS(0.999)PAAAES(0.001)GAK;VNGDAS(0.984)PAAAES(0.016)GAK;VNGDAS(0.997)PAAAES(0.003)GAK ;;;; 214.63 7.03E-24 916842600 25620.3 23006.3 21146.1 19564.3 19132.4 19192.9 16676.1 12133.5 22978.6 21878.6 TRUE FALSE FALSE 22617.12727 23715.09683 22289.32213 20362.21672 17721.04097 18826.82741 17319.30276 13514.72859 22031.41238 21748.46511 1.039941309 1.090426231 1.024868744 0.936259943 0.814818006 0.86566235 0.79634598 0.621410685 1.013009988 1 14.40862597 -4.697274411 0.602967784 1.027673747 0.526958251 0.872740403 0.048939609 0.609126673 0.205043873 0.010035547 0.190434647 2.01E-05 4.697274411 -0.500715496 VLDNYLTSPLPEEVDET(ph)SAEDEGVSQR ddPTM_HeLa_CUDC101_4h_R1 1 VLDNYLTSPLPEEVDETSAEDEGVSQR 27 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 1 0 VLDNYLTSPLPEEVDET(0.592)S(0.408)AEDEGVSQR 134.38 3.12E-11 4865400 1206.7 1093 699.31 858.77 950.53 993.3 1182.2 1173.1 1017.6 970.16 TRUE FALSE FALSE 1065.252455 1126.674034 737.1168139 893.7943525 880.4112956 974.3544575 1227.79785 1306.640962 975.6540973 964.3894452 1.104587426 1.168277028 0.764335215 0.926798149 0.912920916 1.010332975 1.27313489 1.354889323 1.011680605 1 9.913472051 -4.696372977 4.160436024 1.017571475 1.334310603 0.590097751 0.107277063 0.127392423 4.266976591 0.01639742 0.066803352 2.01E-05 4.696372977 0.316739128 GS(ph)IGLLLGK ddPTM_HeLa_CUDC101_4h_R1 2 GSIGLLLGK 9 0 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 0 GS(1)IGLLLGK;GS(1)IGLLLGK ; 101.38 0.016448 8204500 2957.7 2471.5 2114.1 2407.44 2657.8 2930 3037.3 3110.4 1894.71 2858.1 TRUE FALSE FALSE 2611.00289 2547.643986 2228.394641 2505.625809 2461.739389 2874.115132 3154.449678 3464.475363 1816.609252 2841.099894 0.919011294 0.896710457 0.784342235 0.881921053 0.86647407 1.011620583 1.110291717 1.219413429 0.639403513 1 11.47223384 -4.695308635 2.036991743 0.93086533 1.212366625 0.49737444 0.110055885 0.185368822 1.372662575 0.010784598 0.069853068 2.02E-05 4.695308635 0.281501295 S(ph)RFTPELQPK ddPTM_HeLa_CUDC101_4h_R1 2 SRFTPELQPK 10 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(0.55)RFT(0.45)PELQPK;S(0.996)RFT(0.004)PELQPK ; 112.02 0.0042803 74240000 11755.9 11302.4 12499.7 11324.4 11497.9 9970.7 8491.6 4634 11933.5 12270.7 TRUE FALSE FALSE 10377.89122 11650.61355 13175.47159 11786.25798 10649.72282 9780.52551 8819.123856 5161.515829 11441.59608 12197.71333 0.85080629 0.955147349 1.080159144 0.966267829 0.873091746 0.801832708 0.723014521 0.423154381 0.938011557 1 13.57432309 -4.071068387 0.938076272 0.943227986 6.52E-20 0.88054468 0.060629718 0.846775046 0.444759713 0.011919868 0.880312962 8.49E-05 4.071068387 -0.943227986 down ESVPEFPLS(ph)PPKKK ddPTM_HeLa_CUDC101_4h_R1 1 ESVPEFPLSPPKKK 14 2 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 ESVPEFPLS(1)PPKKK 53.448 0.037986 424500000 6728 6696.5 7006.3 6114.6 7310.9 6423.4 4790.8 3919.8 6790.8 6832.4 TRUE FALSE FALSE 5939.354039 6902.811228 7385.081771 6363.979818 6771.589472 6300.884347 4975.582761 4366.014188 6510.88035 6791.760581 0.874494024 1.016350789 1.087358967 0.937014746 0.997030062 0.927724744 0.732591013 0.642839826 0.958643973 1 12.72956989 -4.694313643 2.786017409 0.959989757 0.653789049 0.815205871 0.05528758 0.105636603 1.575476618 0.009669296 0.047930288 2.02E-05 4.694313643 -0.306200708 EPVS(ph)PMELTGPEDGAASSGAGR ddPTM_HeLa_CUDC101_4h_R1 2 EPVSPMELTGPEDGAASSGAGR 22 0 K7EQ54;A0A0C4DFL8;F5GX28;O94953 K7EQ54 KDM4B Lysine-specific demethylase 4B 1 0 EPVS(1)PMELTGPEDGAASSGAGR;EPVS(1)PMELTGPEDGAASSGAGR ; 159.72 1.73E-07 10686900 1326.24 1454.41 1119.1 1045.18 1135.18 1287.48 1677.84 862.73 1161 1153.53 TRUE FALSE FALSE 1170.780158 1499.218648 1179.601931 1087.806958 1051.440033 1262.923464 1742.554851 960.9396959 1113.143089 1146.668752 1.02102735 1.307455745 1.028720743 0.948667133 0.916951849 1.101384739 1.519667164 0.83802728 0.970762556 1 10.16323297 -4.694091556 0.145673937 0.958075123 1.271553404 0.023550346 0.190114857 55.61084243 1.627607033 0.69974411 3.557900494 2.02E-05 4.694091556 0.313478281 EPS(ph)YFEIPTK ddPTM_HeLa_CUDC101_4h_R1 1 EPSYFEIPTK 10 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2;J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 H0Y2V6;J3KQR7 CEP170;CEP170B Centrosomal protein of 170 kDa;Centrosomal protein of 170 kDa protein B 1 0 EPS(1)YFEIPTK 110.08 0.0012187 0 770.9 932.08 762.3 906.75 654.71 834.2 1233.4 1284.7 879.3 981.16 TRUE FALSE FALSE 680.5362706 960.79628 803.5122438 943.7311843 606.4133477 818.2890249 1280.972651 1430.945055 843.0548818 975.3240167 0.697754038 0.985104707 0.823841339 0.96760786 0.621755783 0.838991977 1.313381634 1.467148384 0.864384417 1 9.929737772 -4.693775239 4.111068006 0.850640625 1.428877826 0.779427622 0.115979409 0.082496452 2.678150333 0.019213887 0.07873383 2.02E-05 4.693775239 0.5782372 TSEVYS(ph)DDEEEEEDDKSSEK ddPTM_HeLa_CUDC101_4h_R1 2 TSEVYSDDEEEEEDDKSSEK 20 1 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog 1 0 T(0.001)S(0.001)EVYS(0.998)DDEEEEEDDKSSEK;T(0.002)S(0.001)EVYS(0.997)DDEEEEEDDKSSEK ; 150.36 9.66E-06 93758000 4233.6 3849.6 4014.9 3831.81 3792.54 3459.79 2997.47 1444.91 2958.12 3356.01 TRUE FALSE FALSE 3737.343826 3968.201613 4231.957638 3988.087774 3512.77188 3393.80027 3113.083422 1609.392714 2836.185042 3336.048303 1.120290681 1.189491654 1.268554066 1.195452647 1.052973926 1.01731149 0.933164972 0.482424883 0.850163062 1 11.70392446 -4.06770456 1.432927028 1.093486833 4.14E-13 0.731654466 0.110788856 0.675224913 0.870909791 0.014595392 1.199633402 8.56E-05 4.06770456 -1.093486833 down S(ph)IGSAVDQGNESIVAK ddPTM_HeLa_CUDC101_4h_R1 2 SIGSAVDQGNESIVAK 16 0 Q9H0H5;F8VRD2;F8W1E5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 S(0.999)IGS(0.001)AVDQGNESIVAK;S(1)IGSAVDQGNESIVAK ; 283.22 3.04E-103 173562000 5659.7 5102.1 5391 4605.9 4856.5 4568.6 3475.9 2845.1 4769.8 5346.1 TRUE FALSE FALSE 4996.278546 5259.289654 5682.453767 4793.74851 4498.245671 4481.461567 3609.966627 3168.974684 4573.186825 5314.301159 0.940157209 0.989648403 1.069275827 0.902046829 0.846441618 0.843283328 0.679292821 0.596310707 0.860543407 1 12.37566427 -4.693750161 0.794183546 0.9789182 0.487414095 0.826623285 0.057309501 0.342579085 0.224589197 0.007767669 0.129597815 2.02E-05 4.693750161 -0.491504105 RTAS(ph)PPPPPKR ddPTM_HeLa_CUDC101_4h_R1 1 RTASPPPPPKR 11 2 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RT(0.095)AS(0.905)PPPPPKR 67.334 0.027221 10909000 1118.5 995.31 1146.4 1038.4 1047.5 798.34 1295.2 1225.8 1380.5 1029 TRUE FALSE FALSE 987.3911255 1025.974321 1208.377852 1080.75044 970.2280119 783.1129946 1345.156298 1365.340117 1323.595206 1022.879462 0.965305456 1.003025634 1.181349217 1.056576537 0.948526242 0.765596557 1.315068244 1.334800597 1.293989424 1 9.99842043 -4.690795284 10.8963766 0.989867144 1.326649778 0.412986975 0.136626065 0.219527701 32.56744411 0.013430364 0.050305901 2.04E-05 4.690795284 0.336782634 VYFQS(ph)PPGAAGEGPGGADDEGPVRR ddPTM_HeLa_CUDC101_4h_R1 1 VYFQSPPGAAGEGPGGADDEGPVRR 25 1 Q96C90 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B 1 0 VY(0.003)FQS(0.997)PPGAAGEGPGGADDEGPVRR 77.791 0.00010086 83245000 1252.2 1082.9 1295.6 1047.6 1377.4 1101.2 816.18 651.94 1163.5 1072.4 TRUE FALSE FALSE 1105.419014 1116.262865 1365.644055 1090.325656 1275.791946 1080.196445 847.660336 726.1542144 1115.540038 1066.021317 1.036957701 1.047129966 1.281066366 1.022799112 1.196779019 1.013297227 0.795162651 0.681181701 1.046451905 1 10.05802057 -4.689639822 3.041361682 1.052991396 0.701087659 0.70829604 0.088137577 0.115776041 2.067484685 0.013179108 0.062102527 2.04E-05 4.689639822 -0.351903736 DLTSLETTSEMEAGS(ph)PENKK ddPTM_HeLa_CUDC101_4h_R1 2 DLTSLETTSEMEAGSPENKK 20 1 Q5VYS8-5;Q5VYS8-3;Q5VYS8-2;Q5VYS8-4;Q5VYS8-6;Q5VYS8 Q5VYS8-5 ZCCHC6 Terminal uridylyltransferase 7 1 0 DLTSLET(0.001)T(0.004)S(0.007)EMEAGS(0.988)PENKK;DLTSLETT(0.046)S(0.046)EMEAGS(0.907)PENKK ; 118.37 1.41E-05 80329000 4868.1 4761.6 4329.2 4109.1 5206.1 4757.6 3965.2 3640.4 4215.4 4565.1 TRUE FALSE FALSE 4297.468698 4908.299252 4563.249647 4276.686859 4822.056375 4666.856707 4118.139092 4054.808421 4041.639428 4537.946582 0.947007335 1.081612391 1.005575884 0.942427766 1.062607567 1.028407149 0.907489548 0.893533749 0.890631777 1 12.14782391 -4.688390407 7.344555001 0.991031135 0.898546753 0.324076154 0.054287661 0.184238934 15.47376478 0.006583663 0.02488287 2.05E-05 4.688390407 -0.092484382 S(ph)SLGSLQT(ph)PEAVTTR ddPTM_HeLa_CUDC101_4h_R1 2 SSLGSLQTPEAVTTR 15 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 2 0 S(0.918)S(0.082)LGS(0.001)LQT(0.999)PEAVTTR;S(0.762)S(0.232)LGS(0.145)LQT(0.861)PEAVTTR ; 170.16 2.77E-06 37050000 7619.7 6238 6119.7 5855.9 6521.9 6254.1 5062.6 1992.54 7465.5 7772.6 TRUE FALSE FALSE 6726.530317 6430.185386 6450.549493 6094.728913 6040.79243 6134.813463 5257.866178 2219.362699 7157.76893 7726.36823 0.870594064 0.832239054 0.834874718 0.788821958 0.781841125 0.794009977 0.680509396 0.287245266 0.926407947 1 12.91557472 -4.06735764 0.487628844 0.934089519 1.93E-59 0.81700275 0.078502867 1.696045512 0.236880081 0.018347496 0.944159881 8.56E-05 4.06735764 -0.934089519 down (ac)MDLFGDLPEPERS(ph)PRPAAGK ddPTM_HeLa_CUDC101_4h_R1 1 MDLFGDLPEPERSPRPAAGK 20 2 F8SNU6;E9PC05;F8SNU7;Q9H0C8 F8SNU6 ILKAP2;ILKAP;ILKAP3 Integrin-linked kinase-associated serine/threonine phosphatase 2C 1 0 MDLFGDLPEPERS(1)PRPAAGK 59.585 0.0036788 12947000 2848.7 2322.8 2063.6 2473.4 2814.8 2720.5 2800.9 2726.4 3174.9 2853.4 TRUE FALSE FALSE 2514.779704 2394.362715 2175.164458 2574.275943 2607.157812 2668.610995 2908.931651 3036.762356 3044.029278 2836.42785 0.886600978 0.844147231 0.766867544 0.907576741 0.919169445 0.940835141 1.025561659 1.070629156 1.073191154 1 11.46985945 -4.687279961 2.232393702 0.919019489 1.070035843 0.323132114 0.077661011 0.317804443 2.901741043 0.011089062 0.066772 2.05E-05 4.687279961 0.151016354 NRPDYVS(ph)EEEEDDEDFETAVKK ddPTM_HeLa_CUDC101_4h_R1 2 NRPDYVSEEEEDDEDFETAVKK 22 2 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NRPDY(0.15)VS(0.849)EEEEDDEDFET(0.001)AVKK;NRPDY(0.177)VS(0.823)EEEEDDEDFETAVKK ; 61.561 0.0051129 33057000 3166.7 2601.6 2721.7 2480.3 3370.6 3044.3 3248.8 3122 3112.9 2645 TRUE FALSE FALSE 2795.504226 2681.752212 2868.843335 2581.457355 3121.957553 2986.23505 3374.107304 3477.39586 2984.584944 2629.267422 1.063225522 1.019961754 1.091118884 0.981816202 1.187386846 1.135766953 1.283287989 1.322572147 1.135139362 1 11.36044517 -4.686340169 0.686856642 1.027823452 1.434858388 0.733610621 0.056594691 0.498734025 0.227172567 0.007620032 0.140457642 2.06E-05 4.686340169 0.407034937 TMS(ph)SDDEDCSAK ddPTM_HeLa_CUDC101_4h_R1 1 TMSSDDEDCSAK 12 0 H0YBW3;Q9NVR2 H0YBW3 INTS10 Integrator complex subunit 10 1 0 T(0.001)MS(0.892)S(0.107)DDEDCSAK 114.87 0.0090325 10385000 4467.3 3169.7 4013.3 4025 3634.8 3711.8 3176.4 2828.5 3667.2 3435.8 TRUE FALSE FALSE 3943.649866 3267.3547 4230.271138 4189.156898 3366.668046 3641.003599 3298.914812 3150.485007 3516.036464 3415.363709 1.154679326 0.956663764 1.238600482 1.226562456 0.985742173 1.066066138 0.965904394 0.92244495 1.029476438 1 11.73782351 -4.685640267 1.471802867 1.085492604 0.907890292 0.275488326 0.092011111 0.662715875 2.161357564 0.014540239 0.136374335 2.06E-05 4.685640267 -0.177602312 AS(ph)GEWDSGTENR ddPTM_HeLa_CUDC101_4h_R1 1 ASGEWDSGTENR 12 0 A0A0U1RQE4;A0A494C1M0;Q5HYK7-3;Q5HYK7-2;Q5HYK7;A0A0U1RQN2 A0A0U1RQE4 SH3D19 SH3 domain-containing protein 19 1 0 AS(1)GEWDSGTENR 137.95 0.0013134 9943700 1470.7 1086.9 1279.6 1223.5 1069.6 1135.8 870.26 711.67 1142.3 1248.5 TRUE FALSE FALSE 1298.306775 1120.386101 1348.779047 1273.399618 990.6977389 1114.136507 903.8262197 792.6836361 1095.213911 1241.073866 1.046115635 0.902755373 1.08678386 1.026046598 0.798258481 0.897719739 0.728261423 0.638707862 0.882472784 1 10.27737327 -4.683098801 0.699829599 1.020554811 0.519229376 0.674482617 0.078759443 0.571636196 0.2718401 0.010957148 0.201285958 2.07E-05 4.683098801 -0.501325435 S(ph)PRPTSAPAITQGQVAEGGVLDASAK ddPTM_HeLa_CUDC101_4h_R1 1 SPRPTSAPAITQGQVAEGGVLDASAK 26 1 P11171;A0A2R8Y5G2;P11171-7;P11171-2;A0A2R8Y5Z6;A0A2R8Y570;A0A2R8YCW8;A0A3B3IU06;A0A2R8Y6G5;A0A2R8YFR9;A0A2R8YD30;Q4VB86;A0A2U3TZH6;A0A2R8Y420;P11171-3;P11171-5;P11171-4;A0A3B3ITP0;A0A2R8Y7N0;A0A2R8Y7Y3;A0A3B3IUD6;A0A2R8Y4N6;P11171-6;A0A2R8Y5C8;A0A2R8Y6D0;A0A1B0GWG0 P11171 EPB41 Protein 4.1 1 0 S(0.562)PRPT(0.215)S(0.215)APAIT(0.008)QGQVAEGGVLDASAK 63.09 0.0016919 14451000 1480.3 1396.7 1078.1 1182.8 1397.2 1084.8 728.1 642.03 1323.2 1454 TRUE FALSE FALSE 1306.781478 1439.730672 1136.385347 1231.039696 1294.13134 1064.109247 756.1830609 715.1161 1268.657136 1445.351543 0.904127085 0.996111069 0.786234569 0.851723376 0.895374793 0.736228672 0.523182795 0.494769666 0.877749875 1 10.49720472 -4.067086851 0.475211079 0.96196216 1.93E-18 0.840606183 0.06689402 1.260172984 0.167648414 0.014038219 0.704861687 8.57E-05 4.067086851 -0.96196216 down GTRPEDSSVLIPTDNS(ph)TPHKEDLSSK ddPTM_HeLa_CUDC101_4h_R1 2 GTRPEDSSVLIPTDNSTPHKEDLSSK 26 2 Q7KZ85-2;U3KQE3;U3KQP6;U3KQ49;L0R819;U3KQP1 Q7KZ85-2 SUPT6H;ASNSD1 Transcription elongation factor SPT6 1 0 GTRPEDSSVLIPTDNS(0.971)T(0.029)PHKEDLSSK;GTRPEDSSVLIPT(0.004)DNS(0.496)T(0.496)PHKEDLS(0.002)S(0.001)K ; 110.4 5.32E-08 35917000 6845.8 5799.8 5653.3 5556.7 6800.6 5359.2 5268.6 2308.31 6726.7 6279.9 TRUE FALSE FALSE 6043.345702 5978.484964 5958.934498 5783.326244 6298.933287 5256.982189 5471.811667 2571.07868 6449.422579 6242.546876 0.968089759 0.957699651 0.954567842 0.926436975 1.009032597 0.84212138 0.876535135 0.411863736 1.033139632 1 12.60791903 -4.066350946 1.462937082 0.974038165 4.38E-18 0.920989678 0.048146628 0.314581492 0.42328271 0.006115722 0.507684653 8.58E-05 4.066350946 -0.974038165 down AVS(ph)LDSPVS(ph)VGSSPPVK ddPTM_HeLa_CUDC101_4h_R1 1 AVSLDSPVSVGSSPPVK 17 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 2 0 AVS(0.982)LDS(0.018)PVS(0.822)VGS(0.105)S(0.073)PPVK 104.26 0.00095703 0 773.98 594.72 617.89 648.88 657.84 734.98 958.09 1035.8 595.96 591.21 TRUE FALSE FALSE 683.2552377 613.0426183 651.2950024 675.3441311 609.3124538 720.9614811 995.0438522 1153.711285 571.3942766 587.6934566 1.162604807 1.043133306 1.108222314 1.149143526 1.03678618 1.22676452 1.693134135 1.963117459 0.972265847 1 9.198920025 -4.682767966 2.092467022 1.080650937 1.968877892 0.962890028 0.059970867 0.05061673 0.396579016 0.009484032 0.061332316 2.08E-05 4.682767966 0.888226955 SLAPDRS(ph)DDEHDPLDNTSR ddPTM_HeLa_CUDC101_4h_R1 1 SLAPDRSDDEHDPLDNTSR 19 1 Q92614;A0A0D9SFK2;Q92614-2;Q92614-3;Q92614-4;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 SLAPDRS(1)DDEHDPLDNTSR 89.877 0.0020168 3898000 1406.2 857.91 987.37 974 1165.3 1274.9 781.38 675.07 857.53 1089.3 TRUE FALSE FALSE 1241.367368 884.3411902 1040.750209 1013.72393 1079.338141 1250.583407 811.5180883 751.9172401 822.1822504 1082.820795 1.146419955 0.816701336 0.961147231 0.936188088 0.99678372 1.154931095 0.749448193 0.694405984 0.759296694 1 10.08057878 -4.682029039 6.759422538 1.034518939 0.712698086 0.287806331 0.129963774 0.113899503 7.839651559 0.015111967 0.05744247 2.08E-05 4.682029039 -0.321820853 SGRS(ph)PTGNTPPVIDSVSEK ddPTM_HeLa_CUDC101_4h_R1 1 SGRSPTGNTPPVIDSVSEK 19 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 S(0.007)GRS(0.992)PT(0.001)GNTPPVIDSVSEK 158.5 0.00010239 19315000 1362.8 1254.1 1187.6 1406.6 1566.9 1339.5 1629.2 1455.4 1490.3 1443.7 TRUE FALSE FALSE 1203.05465 1292.737335 1251.805248 1463.967228 1451.312909 1313.951269 1692.03879 1621.076853 1428.869203 1435.112808 0.838299709 0.900791441 0.872269581 1.020106029 1.011288381 0.915573509 1.179028422 1.129581482 0.995649398 1 10.48694843 -4.681646804 0.899744728 0.920948403 1.223959597 0.526447265 0.071162055 0.770657839 0.687464125 0.012717702 0.1974668 2.08E-05 4.681646804 0.303011194 DQDMS(ph)SPTTMK ddPTM_HeLa_CUDC101_4h_R1 2 DQDMSSPTTMK 11 0 Q5VW31;O00712;O00712-4;A0A1B0GW37;U3KQE8;A0A0A0MRX8;A0A1B0GU97;A0A2R8Y7V8;Q5VW30;Q5VW27;A0A1B0GWI9;A0A1B0GWJ4;A0A1B0GWB8;A0A1B0GVN4;Q5VW26;O00712-5;O00712-6 Q5VW31 NFIB Nuclear factor 1 B-type;Nuclear factor 1 1 0 DQDMS(0.737)S(0.071)PT(0.192)T(0.001)MK;DQDMS(0.705)S(0.285)PT(0.009)T(0.001)MK ; 171.36 7.93E-07 92744000 14044.8 10177.8 10219.8 9957.3 10029.2 9498.7 8397 6071 11714.8 12314.8 TRUE FALSE FALSE 12398.48983 10491.36595 10772.3133 10363.40173 9289.365897 9317.528123 8720.875103 6762.0981 11231.91099 12241.55102 1.012820174 0.857029141 0.879979447 0.846575872 0.758838964 0.761139508 0.712399523 0.552388998 0.91752352 1 13.57949874 -4.68131384 0.336911469 1.025025575 0.350393544 0.853841319 0.050457303 0.99618888 0.09840966 0.01691656 0.262730275 2.08E-05 4.68131384 -0.674632031 VYS(ph)PYNHR ddPTM_HeLa_CUDC101_4h_R1 4 VYSPYNHR 8 0 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 VYS(1)PYNHR;VYS(0.991)PY(0.008)NHR;VYS(1)PYNHR;VYS(1)PYNHR ;;; 110.38 0.0014408 155701900 12657 11528.8 12302.7 12693.6 12329.3 10340.7 9010.4 7067.23 11063.9 10597.4 TRUE FALSE FALSE 11173.36565 11883.98866 12967.82118 13211.29987 11419.7921 10143.46838 9357.934146 7871.734896 10607.84136 10534.36619 1.060658557 1.128116153 1.231001556 1.254114356 1.08405118 0.962893086 0.888324364 0.747243332 1.006974806 1 13.3628159 -4.681228013 1.719779416 1.071956164 0.749240253 0.642039706 0.086633913 0.297618934 1.44276085 0.015148866 0.120809465 2.08E-05 4.681228013 -0.322715911 RS(ph)TQGVTLTDLQEAEK ddPTM_HeLa_CUDC101_4h_R1 1 RSTQGVTLTDLQEAEK 16 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIS4;H0YHI8;A0A3B3ISH4;F8VZN8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 RS(0.871)T(0.129)QGVTLTDLQEAEK 106.82 0.0011599 3912900 2067 1384.1 1141.7 1487.1 675.71 1293.1 1963.8 2068.9 746.15 948.66 TRUE FALSE FALSE 1824.709393 1426.74248 1203.423755 1547.750366 625.8642195 1268.436272 2039.544424 2304.415213 715.3933812 943.0173281 1.934969103 1.512954681 1.27614172 1.641274576 0.663682629 1.345082677 2.162785734 2.443661579 0.758621671 1 9.881140471 -4.680660939 4.269052087 1.396827175 2.371966272 0.518479512 0.386698098 0.147276678 4.909978882 0.058383398 0.239021566 2.09E-05 4.680660939 0.975139097 NLYPSS(ph)SPYTR ddPTM_HeLa_CUDC101_4h_R1 1 NLYPSSSPYTR 11 0 Q9Y2Z0-2;Q9Y2Z0 Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog 1 0 NLYPS(0.107)S(0.445)S(0.445)PY(0.001)T(0.001)R 100.04 0.013778 103110000 3530.6 3037.3 2976.5 3486.7 3743.2 3727.4 2643.2 2400.5 3444.1 3461.2 TRUE FALSE FALSE 3116.74842 3130.875613 3137.418593 3628.902697 3467.071594 3656.306055 2745.149109 2673.763217 3302.13274 3440.612628 0.905870191 0.909976202 0.911877893 1.054725739 1.00769019 1.062690413 0.79786637 0.777118352 0.959751386 1 11.74844976 -4.679723531 8.271607401 0.964760338 0.784403718 0.65012877 0.054968406 0.140387455 12.51340489 0.008689977 0.032716826 2.09E-05 4.679723531 -0.18035662 YSEEGLS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 YSEEGLSPSK 10 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 YSEEGLS(0.923)PS(0.077)K 163.46 3.89E-05 45663000 2642.5 2000.5 2145 2038.9 2308.2 2104.8 1732.4 1501 2197.1 2079.1 TRUE FALSE FALSE 2332.750156 2062.133034 2260.965188 2122.055155 2137.928685 2064.654447 1799.219248 1671.867773 2106.534608 2066.733421 1.128713618 0.997774078 1.093980078 1.026767716 1.034448209 0.998994077 0.870561839 0.808942148 1.019258017 1 11.0131366 -4.679214121 1.34473635 1.057449809 0.776120346 0.802780943 0.039942391 0.255447551 0.653806167 0.007546223 0.079326171 2.09E-05 4.679214121 -0.281329463 RGWDS(ph)SHEDDLPVYLAR ddPTM_HeLa_CUDC101_4h_R1 2 RGWDSSHEDDLPVYLAR 17 1 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 RGWDS(0.998)S(0.002)HEDDLPVYLAR;RGWDS(0.968)S(0.032)HEDDLPVYLAR ; 122.35 0.00015973 50304000 3815.8 3339.39 3406.78 3221.08 3532.53 3072.36 2928.72 2881.1 4452.92 3806.67 TRUE FALSE FALSE 3368.517708 3442.272648 3590.960832 3352.449565 3271.9423 3013.759852 3041.681711 3209.072778 4269.368753 3784.027758 0.89019371 0.90968483 0.948978459 0.885947403 0.864671855 0.796442322 0.803821194 0.84805741 1.128260422 1 11.88570696 -4.678506466 0.028440219 1.667448945 3.12E-10 0.684651217 0.052748122 200.6503881 1.040448427 25.47859234 36.1980774 2.10E-05 4.678506466 -1.667448945 NSDDAPWS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 NSDDAPWSPK 10 0 Q9UPP1-4;Q9UPP1-3;Q9UPP1-2;Q9UPP1;H0Y3N9;Q9UPP1-5;H0Y589 Q9UPP1-4 PHF8 Histone lysine demethylase PHF8 1 0 NSDDAPWS(1)PK 96.371 0.020191 49991000 3818.7 3397.5 3634.2 3462.4 3784.6 2979.1 2458 1705.3 3124.1 3743.2 TRUE FALSE FALSE 3371.077775 3502.172948 3830.675845 3603.611638 3505.417598 2922.278631 2552.805883 1899.424459 2995.323276 3720.93528 0.905975923 0.941207703 1.029492737 0.968469314 0.942079702 0.785361317 0.686065651 0.510469631 0.804992038 1 11.86144958 -4.676006919 1.214573029 0.961550875 0.463977699 0.841655572 0.061194287 0.157207643 0.306525557 0.006877529 0.081222846 2.11E-05 4.676006919 -0.497573176 HIEPELAGRDS(ph)PIR ddPTM_HeLa_CUDC101_4h_R1 2 HIEPELAGRDSPIR 14 1 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 1 0 HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR ; 135.57 0.0003723 127683000 5596 4336.4 4461.8 3991.1 4568.6 3891.2 3349.7 2651.1 4640.8 4433.3 TRUE FALSE FALSE 4940.045363 4469.999344 4703.018404 4153.874309 4231.58348 3816.981843 3478.899051 2952.890508 4449.50426 4406.930534 1.120971916 1.014311278 1.06718687 0.942577669 0.960211069 0.866131611 0.78941545 0.670056059 1.00966063 1 12.10555844 -4.675514601 0.670821521 1.056567229 0.551595304 0.900609799 0.040392325 0.496480355 0.211947373 0.008995215 0.170826624 2.11E-05 4.675514601 -0.504971926 S(ph)YSHDVLPK ddPTM_HeLa_CUDC101_4h_R1 1 SYSHDVLPK 9 0 Q13480-2;B7Z3B9;Q13480 Q13480-2 GAB1 GRB2-associated-binding protein 1 1 0 S(0.5)YS(0.5)HDVLPK 79.659 0.028397 3283300 6936.3 4376.6 3966.9 4262.9 6953.3 6227.7 6714.6 6861.8 6367.7 6059.8 TRUE FALSE FALSE 6123.237429 4511.437858 4181.362613 4436.759488 6440.368912 6108.916999 6973.584371 7642.919576 6105.220711 6023.75604 1.016514844 0.748940998 0.694145411 0.736543688 1.069161644 1.014137518 1.157680411 1.268796333 1.013523899 1 12.55644763 -4.675415113 1.51200445 0.946635255 1.287946531 0.462265011 0.131314521 0.521557389 1.809302132 0.022584999 0.210446746 2.11E-05 4.675415113 0.341311277 QPS(ph)EEEIIK ddPTM_HeLa_CUDC101_4h_R1 4 QPSEEEIIK 9 0 Q15121-2;Q15121;B1AKZ5 Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 1 0 QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK;QPS(1)EEEIIK ;;; 139.78 0.0018935 511682000 17237.8 13804 12754.9 12099.2 15978.1 15537.5 17277.8 17136.3 15373.7 16375.2 TRUE FALSE FALSE 15217.21121 14229.28488 13444.46848 12592.65767 14799.4274 15241.14807 17944.21053 19087.02712 14739.98958 16277.79958 0.934844488 0.874152849 0.825938937 0.773609333 0.909178622 0.93631501 1.102373232 1.1725803 0.905527157 1 13.99061807 -4.675378436 3.286013873 0.931030594 1.160596022 0.654337 0.06733021 0.151754634 3.130388928 0.011925853 0.054738284 2.11E-05 4.675378436 0.229565428 S(ph)PSFGDPQLS(ph)PEAR ddPTM_HeLa_CUDC101_4h_R1 2 SPSFGDPQLSPEAR 14 0 O95425-3;O95425;A0A6I8PIX7;O95425-2;O95425-4 O95425-3 SVIL Supervillin 2 0 S(1)PSFGDPQLS(1)PEAR;S(1)PSFGDPQLS(1)PEAR ; 159.44 0.00050864 25770000 5047.7 4160.7 3761 3517.5 3898.6 3586.6 3043.5 2477.7 4011 4782.3 TRUE FALSE FALSE 4456.016258 4288.886235 3964.331036 3660.958854 3611.008045 3518.191581 3160.888815 2759.751353 3845.664882 4753.854667 0.93734802 0.902191282 0.833919275 0.770103234 0.759595801 0.740071337 0.664910696 0.58052918 0.808957184 1 12.21488208 -4.674661175 0.273552536 1.014836042 0.329904815 0.722475799 0.063012661 0.738144581 0.050879526 0.013486945 0.16642558 2.12E-05 4.674661175 -0.684931227 LSTS(ph)SETVSSTAASK ddPTM_HeLa_CUDC101_4h_R1 2 LSTSSETVSSTAASK 15 0 Q9P242 Q9P242 NYAP2 Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 2 1 0 LST(0.029)S(0.954)S(0.017)ETVSSTAASK;LS(0.03)T(0.298)S(0.597)S(0.038)ET(0.036)VS(0.001)STAASK ; 202.32 1.15E-16 17687200 5335.6 4555.4 4596.6 4230.1 5167.8 4560.3 4060.3 3571.9 4202.7 4571.1 TRUE FALSE FALSE 4710.169056 4695.746475 4845.1061 4402.621762 4786.58169 4473.319875 4216.907131 3978.510658 4029.462927 4543.910894 1.036589222 1.033415176 1.066285456 0.968905831 1.053405712 0.9844647 0.928034733 0.875569691 0.886782998 1 12.14971883 -4.672657048 1.880886385 1.021217301 0.873889541 0.398658036 0.050025253 0.145092137 0.873690934 0.003816 0.028143959 2.12E-05 4.672657048 -0.14732776 LAS(ph)PELER ddPTM_HeLa_CUDC101_4h_R1 4 LASPELER 8 0 P05412;P17535 P05412 JUN;JUND Transcription factor AP-1;Transcription factor jun-D 1 0 LAS(1)PELER;LAS(1)PELER;LAS(1)PELER;LAS(1)PELER ;;; 112.3 0.010545 134114300 20039.7 18980.1 14889 15417.8 17288.6 16383.9 13044.6 12198 19206.2 18329.1 TRUE FALSE FALSE 17690.67674 19564.85438 15693.94438 16046.60453 16013.25442 16071.4044 13547.73459 13586.57101 18414.51231 18220.0777 0.970944089 1.073807407 0.861354416 0.880709994 0.87887959 0.882071123 0.743560747 0.745692265 1.010671448 1 14.15324149 -4.6702312 0.419581976 0.997560022 0.59622006 0.769161811 0.049972073 1.304607718 0.195371978 0.013142459 0.245696026 2.14E-05 4.6702312 -0.401339962 LREVIEIEDAS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 1 LREVIEIEDASPTK 14 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LREVIEIEDAS(0.996)PT(0.004)K 89.913 0.0083512 4132800 4235.7 3275.9 3268.5 3389.7 3788.9 3728.1 3160.1 2876.5 3968.1 3490.9 TRUE FALSE FALSE 3739.197667 3376.826596 3445.204997 3527.946618 3509.400396 3656.992704 3281.986116 3203.949133 3804.533238 3470.135972 1.077536355 0.973110744 0.992815563 1.016659476 1.011314953 1.053847092 0.945780264 0.923292101 1.096364312 1 11.76077648 -4.669869918 5.543060439 1.027306709 0.929677741 0.511796157 0.036559966 0.121846641 5.748792161 0.005153095 0.020042752 2.14E-05 4.669869918 -0.097628968 S(ph)KSTAALSGEAASCSPIIMPYK ddPTM_HeLa_CUDC101_4h_R1 2 SKSTAALSGEAASCSPIIMPYK 22 1 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 S(0.317)KS(0.317)T(0.317)AALS(0.05)GEAASCSPIIMPYK;S(0.314)KS(0.314)T(0.314)AALS(0.056)GEAAS(0.002)CSPIIMPYK ; 60.79 0.0075275 38986000 6899.1 5370.5 6342.4 5614.7 5432.9 6459.9 10059.4 11484.7 4182.1 4342.5 TRUE FALSE FALSE 6090.397956 5535.958739 6685.289329 5843.691735 5032.125791 6336.68817 10447.39443 12792.07183 4009.712068 4316.670617 1.41090171 1.28246031 1.548714257 1.353749742 1.16574236 1.467957306 2.420243599 2.963411611 0.928889977 1 12.0757033 -4.668309911 2.213192124 1.241173717 2.963590065 0.917543632 0.175303601 0.072808474 0.645231932 0.02799908 0.176414631 2.15E-05 4.668309911 1.722416349 up LPSANQGS(ph)PFK ddPTM_HeLa_CUDC101_4h_R1 1 LPSANQGSPFK 11 0 Q56NI9;E5RFE4;E5RFP7;E5RIE3 Q56NI9 ESCO2 N-acetyltransferase ESCO2 1 0 LPSANQGS(1)PFK 156.6 0.00017893 69353000 4370.1 4296 4455.3 4939.5 4613.7 3559.2 2695.6 1774.6 3116.3 3740.5 TRUE FALSE FALSE 3857.843503 4428.354668 4696.166995 5140.95416 4273.356543 3491.31419 2799.570195 1976.613291 2987.844795 3718.25134 1.037542423 1.190977764 1.263004183 1.382626856 1.149292006 0.9389667 0.752926561 0.531597547 0.803561815 1 11.86040858 -4.667278579 1.94432718 1.084861528 0.536689703 0.614388672 0.151885315 0.214778932 1.397562052 0.021900698 0.157754291 2.15E-05 4.667278579 -0.548171825 DLYANTVLSGGTT(ph)MYPGIADR ddPTM_HeLa_CUDC101_4h_R1 1 DLYANTVLSGGTTMYPGIADR 21 0 P60709;A0A2R8Y793;P63261 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 DLY(0.097)ANT(0.252)VLS(0.004)GGT(0.041)T(0.591)MY(0.014)PGIADR 174.7 7.12E-09 15715000 2175.9 1396.6 1500.9 1752.9 1727 1957.3 2023.3 1999.9 1693.4 2065.5 TRUE FALSE FALSE 1920.8443 1439.627591 1582.043194 1824.390839 1599.602651 1919.967764 2101.339359 2227.560532 1623.597335 2053.214314 0.935530347 0.701157975 0.770520244 0.888553536 0.779072423 0.935103438 1.02343888 1.084913794 0.790758823 1 11.00366851 -4.6668054 3.085083431 0.913935184 1.073481621 0.249763448 0.103971558 0.322700925 5.855251895 0.016612435 0.080077662 2.15E-05 4.6668054 0.159546436 S(ph)VSEINSDDELSGK ddPTM_HeLa_CUDC101_4h_R1 3 SVSEINSDDELSGK 14 0 F8WF45;A0A2R8Y7M0;P82094;P82094-2 F8WF45 TMF1 TATA element modulatory factor 1 0 S(0.998)VS(0.002)EINSDDELSGK;S(1)VSEINSDDELSGK;S(0.535)VS(0.021)EINS(0.444)DDELSGK ;; 285.04 1.89E-103 37268100 8514.1 7741.85 7945.5 7002.52 8695.57 7381.84 7775.9 7045.64 7838.05 7846.5 TRUE FALSE FALSE 7516.090105 7980.367222 8375.057764 7288.113033 8054.115125 7241.043701 8075.819068 7847.687178 7514.962261 7799.828669 0.963622462 1.023146477 1.07374894 0.93439399 1.032601544 0.928359328 1.035384162 1.006135841 0.963477863 1 12.92922672 -4.666717275 0.002297875 0.227675051 1.767793432 0.015294605 0.044674199 533864.1199 222.901878 73639.29532 75768.44508 2.15E-05 4.666717275 1.540118381 SSSLGNS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 1 SSSLGNSPER 10 0 Q5SQI0-7;Q5SQI0-6;Q5SQI0-5;Q5SQI0-4;Q5SQI0-3;Q5SQI0-2;Q5SQI0 Q5SQI0-7 ATAT1 Alpha-tubulin N-acetyltransferase 1 1 0 SSSLGNS(1)PER 82.774 0.039384 8980100 1766.6 1430.7 1357.2 1382.2 1344.2 1294.9 1229.4 669.24 1414.1 1960.8 TRUE FALSE FALSE 1559.521826 1474.778171 1430.574337 1438.57209 1245.041044 1270.20194 1276.81837 745.4235764 1355.810199 1949.137074 0.800108851 0.756631327 0.733952658 0.738055886 0.638765257 0.651673993 0.655068536 0.382437739 0.695595101 1 10.92861984 -4.666471071 0.125583082 1.165614919 1.86E-14 0.459545593 0.107676052 6.481943071 0.157854203 0.327594091 1.397985421 2.16E-05 4.666471071 -1.165614919 EDLKPWEKS(ph)PILK ddPTM_HeLa_CUDC101_4h_R1 1 EDLKPWEKSPILK 13 2 E9PDR5;E7EPI0;Q9P2D0-2;Q9P2D0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 0 EDLKPWEKS(1)PILK 86.214 0.01903 32206000 2024.3 1732.8 1491.3 1578.1 1914.1 1769.3 1224 977.92 1622.5 1664.7 TRUE FALSE FALSE 1787.014623 1786.185514 1571.924189 1642.461739 1772.900656 1735.55355 1271.21009 1089.24246 1555.619863 1654.79829 1.07989876 1.079397728 0.94991891 0.992544982 1.071369645 1.048800667 0.7681964 0.658232768 0.940066153 1 10.69243966 -4.665257197 3.650602173 1.035340562 0.679673964 0.853379067 0.051361093 0.050959775 1.264379433 0.006681963 0.029390272 2.16E-05 4.665257197 -0.355666598 RS(ph)LSGSSPCPK ddPTM_HeLa_CUDC101_4h_R1 1 RSLSGSSPCPK 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RS(0.968)LS(0.028)GS(0.001)S(0.003)PCPK 70.54 0.031575 9590000 9942.6 8342.8 8479.3 7953.4 7334.8 5824.6 4929.7 2791.3 9161.7 5510.4 TRUE FALSE FALSE 8777.1435 8599.831779 8937.716606 8277.77403 6793.726417 5713.505459 5119.84018 3109.050309 8784.050848 5477.623896 1.6023633 1.569993111 1.631677672 1.511197955 1.240268873 1.043062753 0.93468268 0.567591052 1.603624311 1 12.4193345 -4.664841409 1.2406446 1.355476976 0.513580161 0.656538566 0.205692413 0.554056477 1.131634689 0.041634337 0.493297087 2.16E-05 4.664841409 -0.841896815 AASSS(ph)SPGSPVASS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 AASSSSPGSPVASSPSR 17 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 2 0 AAS(0.217)S(0.098)S(0.684)SPGSPVAS(0.027)S(0.909)PS(0.064)R 149.19 5.35E-07 0 1851 1507.4 1430.1 1534.4 1704.1 1886.8 1749.3 1758.8 1759.2 1948.1 TRUE FALSE FALSE 1634.028586 1553.841207 1507.415532 1596.979464 1578.391938 1850.812434 1816.771087 1959.014683 1686.685031 1936.512615 0.843799608 0.802391472 0.778417616 0.824667731 0.815069278 0.955745095 0.93816641 1.011619892 0.870990986 1 10.91924518 -4.66386635 1.863952498 0.890317829 1.001946914 0.268463148 0.069320822 0.699425783 4.093150433 0.013563758 0.102983239 2.17E-05 4.66386635 0.111629085 EVYQQQQYGS(ph)GGR ddPTM_HeLa_CUDC101_4h_R1 2 EVYQQQQYGSGGR 13 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 0 EVYQQQQYGS(1)GGR;EVYQQQQYGS(1)GGR ; 219.41 1.27E-41 13550000 1823.72 1697.24 1501.74 1924.47 2133.96 1575.04 1208.27 760.4 1838.76 2214.7 TRUE FALSE FALSE 1609.946306 1749.529953 1582.928607 2002.958205 1976.542022 1544.998736 1254.873379 846.9608624 1762.965535 2201.526866 0.731286241 0.794689349 0.719013986 0.909804116 0.897805088 0.701785093 0.570001392 0.384715206 0.800792196 1 11.10428873 -4.661467094 1.510233143 0.85706782 0.358659959 0.746968519 0.084758652 0.275433521 0.94139485 0.016954468 0.163393076 2.18E-05 4.661467094 -0.498407861 TATNNASSSCQS(ph)TPR ddPTM_HeLa_CUDC101_4h_R1 1 TATNNASSSCQSTPR 15 0 Q92833-2;Q92833-3;Q92833 Q92833-2 JARID2 Protein Jumonji 1 0 TATNNASSSCQS(0.5)T(0.5)PR 102.63 0.0047146 2676900 872.49 810.53 1156.8 899 684.86 683.71 608.06 369.11 624.42 792.01 TRUE FALSE FALSE 770.2180448 835.5014686 1219.340107 935.6651058 634.3392422 670.6693709 631.5130779 411.1279904 598.6811433 787.2990893 0.97830425 1.061224991 1.548763518 1.188449369 0.805715707 0.851860976 0.802126011 0.522200516 0.760424026 1 9.620767999 -4.66107913 1.095363294 1.045144898 0.488693674 0.406631945 0.204134742 0.769550524 1.126960405 0.030818439 0.41815052 2.18E-05 4.66107913 -0.556451225 SFS(ph)PLQPGQAPTGR ddPTM_HeLa_CUDC101_4h_R1 1 SFSPLQPGQAPTGR 14 0 Q7Z3C6;H7C152;Q7Z3C6-2;H7C1G6 Q7Z3C6 ATG9A Autophagy-related protein 9A 1 0 SFS(1)PLQPGQAPTGR 171.15 4.53E-07 24351000 1195.5 877.23 885.6 1039.8 945.66 793.65 546 334.69 737.71 742.69 TRUE FALSE FALSE 1055.365302 904.2564165 933.4782148 1082.207538 875.9005458 778.5124486 567.0594029 372.7897567 707.3012816 738.2724468 1.429506555 1.224827529 1.264408849 1.465864727 1.186419119 1.054505626 0.76808962 0.50494876 0.958049138 1 9.528009506 -4.659962708 1.628831383 1.232959291 0.469532509 0.711085171 0.150782868 0.241538528 1.002691041 0.025726054 0.228662895 2.19E-05 4.659962708 -0.763426782 GLQLT(ph)PGIGGMQQHFFDDEDR ddPTM_HeLa_CUDC101_4h_R1 1 GLQLTPGIGGMQQHFFDDEDR 21 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 GLQLT(1)PGIGGMQQHFFDDEDR 125.16 9.59E-07 5233700 1481.5 998.57 1066.4 1369.4 1332.7 1520.9 1921.9 2080.8 1053.1 1588.3 TRUE FALSE FALSE 1307.840816 1029.334758 1124.05281 1425.250051 1234.389376 1491.891366 1996.028327 2317.669861 1009.690772 1578.852721 0.828348837 0.651951094 0.711942789 0.902712477 0.781826804 0.944921174 1.264227056 1.467945572 0.639509157 1 10.62466088 -4.658433478 2.407428806 0.870666948 1.456395405 0.759812143 0.124694549 0.125786449 1.344411921 0.018101375 0.107423503 2.20E-05 4.658433478 0.585728457 VLEDEEGS(ph)KDIELSDDPYDCIR ddPTM_HeLa_CUDC101_4h_R1 1 VLEDEEGSKDIELSDDPYDCIR 22 1 Q15024 Q15024 EXOSC7 Exosome complex component RRP42 1 0 VLEDEEGS(1)KDIELSDDPYDCIR 87.356 0.00034094 66584000 1721.3 1537.3 2126.2 1700.5 2366.9 2744.2 3028.7 2907.6 1690.2 378.9 TRUE FALSE FALSE 1519.531823 1584.662391 2241.148803 1769.85374 2192.298503 2691.858957 3145.517974 3238.589431 1620.529241 376.6462859 4.034373575 4.207295943 5.950274533 4.698980997 5.820576451 7.146914911 8.351384551 8.598490286 4.302522821 1 8.557066493 -4.657987947 0.168162876 3.73E-16 15.32732482 0.76515072 1.048540026 2.529274847 0.086974521 1.375846581 8.719733641 2.20E-05 4.657987947 15.32732482 up ATSAGS(ph)SPSCSLAGR ddPTM_HeLa_CUDC101_4h_R1 1 ATSAGSSPSCSLAGR 15 0 Q9BXB5-2;Q9BXB5 Q9BXB5-2 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 ATSAGS(0.498)S(0.498)PS(0.004)CSLAGR 146.84 0.00028943 102470000 4215.8 3057.7 2987.1 3162.7 3633.6 3942.6 4879.3 5311.6 2619.6 2930.3 TRUE FALSE FALSE 3721.630315 3151.904113 3148.591661 3291.688576 3365.556567 3867.401474 5067.496235 5916.251074 2511.618979 2912.870445 1.277650477 1.082061208 1.08092403 1.13004977 1.155408945 1.327694296 1.739691597 2.031072506 0.862248777 1 11.50822582 -4.65757578 1.56269278 1.125165467 2.100635402 0.901636372 0.10617932 0.118538418 0.441268244 0.015007159 0.140495408 2.20E-05 4.65757578 0.975469935 ICNGGLS(ph)PGNPGDSK ddPTM_HeLa_CUDC101_4h_R1 1 ICNGGLSPGNPGDSK 15 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 ICNGGLS(1)PGNPGDSK 182.49 1.18E-10 22457000 3842.7 3417.9 3162.7 3186.7 2858.4 2905.7 2628.1 2058.7 3447.8 2769.5 TRUE FALSE FALSE 3392.264531 3523.201448 3333.685129 3316.6674 2647.541527 2850.278614 2729.466697 2293.054086 3305.680225 2753.026891 1.232194477 1.279755552 1.210916297 1.204734836 0.96168386 1.035325381 0.991442077 0.832921064 1.200743892 1 11.42680299 -4.657361277 0.934340307 1.135874751 0.800953351 0.560962442 0.093561688 1.026904292 0.989493811 0.019035368 0.301197718 2.20E-05 4.657361277 -0.334921401 TASISSS(ph)PSEGTPTVGS(ph)YGCTPQSLPK ddPTM_HeLa_CUDC101_4h_R1 1 TASISSSPSEGTPTVGSYGCTPQSLPK 27 0 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 2 0 T(0.001)AS(0.001)IS(0.017)S(0.08)S(0.537)PS(0.148)EGT(0.216)PT(0.072)VGS(0.479)Y(0.002)GCT(0.446)PQS(0.001)LPK 108.39 2.37E-07 18639000 5017 4511.9 4141.9 3634.1 3951.3 3425.7 2481.8 1736.9 4866.2 3405.5 TRUE FALSE FALSE 4428.914865 4650.906291 4365.823643 3782.314306 3659.820471 3360.36048 2577.523857 1934.621675 4665.613176 3385.243935 1.308300067 1.373876264 1.289662939 1.117294464 1.081109823 0.992649435 0.761399742 0.571486638 1.378220674 1 11.72504408 -4.655431725 1.128196154 1.177349864 0.47056912 0.775585834 0.120436269 0.419171971 0.660270161 0.022155793 0.295734206 2.21E-05 4.655431725 -0.706780744 AMTLS(ph)PQEEVAAGQMASSSR ddPTM_HeLa_CUDC101_4h_R1 3 AMTLSPQEEVAAGQMASSSR 20 0 A0A494BZT8;Q9Y6A5 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 0 AMT(0.055)LS(0.945)PQEEVAAGQMASSSR;AMT(0.095)LS(0.905)PQEEVAAGQMASSSR;AMT(0.003)LS(0.997)PQEEVAAGQMASSSR ;; 248.94 7.83E-57 129869800 4464 4237.4 3734 3973.9 4695.7 4210.8 3490.41 2986.92 4629.7 4506.6 TRUE FALSE FALSE 3940.736687 4367.949271 3935.871335 4135.972819 4349.307566 4130.486006 3625.036283 3326.938899 4438.861806 4479.794543 0.879669067 0.975033393 0.878583001 0.92325056 0.970872107 0.922025768 0.809196995 0.742654349 0.990862809 1 12.12921685 -4.655229142 2.597815071 0.939950289 0.748213061 0.74222447 0.040286036 0.134676337 1.701415414 0.006922274 0.038647446 2.21E-05 4.655229142 -0.191737227 IHFS(ph)PSEPK ddPTM_HeLa_CUDC101_4h_R1 2 IHFSPSEPK 9 0 Q8IZT6;Q8IZT6-2 Q8IZT6 ASPM Abnormal spindle-like microcephaly-associated protein 1 0 IHFS(0.993)PS(0.007)EPK;IHFS(0.993)PS(0.007)EPK ; 104.07 0.0010423 10421000 19605.2 13878.9 12989.7 13702.9 15326 13959.4 11266.2 5274 16170 16493.8 TRUE FALSE FALSE 17307.10818 14306.49246 13691.96247 14261.76349 14195.43151 13693.1477 11700.74111 5874.370842 15503.46576 16395.69414 1.055588621 0.872576198 0.835095017 0.869848106 0.865802411 0.835167306 0.713647193 0.358287413 0.945581542 1 14.00102936 -4.063913039 0.48507805 1.014145007 7.39E-26 0.802191725 0.081241909 1.568591216 0.216426398 0.018329342 0.943988361 8.63E-05 4.063913039 -1.014145007 down VNASASS(ph)LK ddPTM_HeLa_CUDC101_4h_R1 2 VNASASSLK 9 0 Q16658 Q16658 FSCN1 Fascin 1 0 VNASAS(0.05)S(0.949)LK;VNASAS(0.181)S(0.819)LK ; 159.09 7.93E-05 71898000 10980.5 9694.5 7496.5 9266.3 8357 8987.8 8136.4 7558.4 7566.2 7582.7 TRUE FALSE FALSE 9693.382435 9993.176054 7901.783466 9644.219766 7740.520759 8816.37269 8450.223674 8418.817704 7254.318034 7537.597763 1.286004207 1.325777306 1.048315884 1.279481881 1.026921441 1.169652848 1.121076494 1.116909919 0.96241777 1 12.87988909 -4.652357327 8.084875448 1.14960861 1.118097234 0 0.122330299 1.505247882 101.4065371 0.018080246 0.068183817 2.23E-05 4.652357327 -0.031511376 VHGLPTT(ph)SPSGMNMAELAQQVVK ddPTM_HeLa_CUDC101_4h_R1 2 VHGLPTTSPSGMNMAELAQQVVK 23 0 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 VHGLPT(0.042)T(0.739)S(0.194)PS(0.024)GMNMAELAQQVVK;VHGLPT(0.125)T(0.68)S(0.157)PS(0.037)GMNMAELAQQVVK ; 121.56 4.07E-07 244250000 8220.1 7814.7 6895.3 6878.2 7857.6 7430 6666.6 3018.7 7635.2 8469.9 TRUE FALSE FALSE 7256.552339 8055.461644 7268.080775 7158.722726 7277.960503 7288.285129 6923.732995 3362.336606 7320.473824 8419.520658 0.861872384 0.956760126 0.863241635 0.850253003 0.864415066 0.865641338 0.822342895 0.399350122 0.869464441 1 13.03952238 -4.063228985 1.619491418 0.917484633 6.78E-14 0.889387436 0.051173178 0.48302923 0.805275808 0.009380053 0.806037919 8.65E-05 4.063228985 -0.917484633 down (ac)MT(ph)TSQK ddPTM_HeLa_CUDC101_4h_R1 1 MTTSQK 6 0 Q9ULM3;E9PJJ8;O75531 Q9ULM3 YEATS2;BANF1 "YEATS domain-containing protein 2;Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed" 1 0 MT(0.948)T(0.039)S(0.014)QK 100.74 0.027837 5085100 4087.1 2869.8 3058.5 3372.6 3174 2956.7 2461.9 1988.3 3649.2 3114.4 TRUE FALSE FALSE 3608.016334 2958.215136 3223.851761 3510.149206 2939.860343 2900.305874 2556.856308 2214.640035 3498.778431 3095.87541 1.165426852 0.955534298 1.041337694 1.13381475 0.949605509 0.936829003 0.825891216 0.715351796 1.130141872 1 11.5961317 -4.650691105 0.8689874 1.071241462 0.627151916 0.768318198 0.064869458 0.563822085 0.448537996 0.012261449 0.208562372 2.24E-05 4.650691105 -0.444089547 EGNTTEDDFPSS(ph)PGNGNK ddPTM_HeLa_CUDC101_4h_R1 1 EGNTTEDDFPSSPGNGNK 18 0 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 1 0 EGNTTEDDFPS(0.071)S(0.929)PGNGNK 245.66 4.25E-56 229580000 18762 17566 18872 17114 18940 18333 18321 17449 20689 19516 TRUE FALSE FALSE 16562.7468 18107.18764 19892.2774 17811.98289 17542.83393 17983.32857 19027.64711 19435.32363 19836.19066 19399.91796 0.853753445 0.933364134 1.02537946 0.918147331 0.904273614 0.926979619 0.980810699 1.001825042 1.022488379 1 14.24376293 -4.649526485 4.064885607 0.933458521 0.997248844 0.048748139 0.05324054 0.337478697 9.837086042 0.008468304 0.036017664 2.24E-05 4.649526485 0.063790323 EKVIET(ph)PENDFK ddPTM_HeLa_CUDC101_4h_R1 4 EKVIETPENDFK 12 1 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 0 EKVIET(1)PENDFK;EKVIET(1)PENDFK;EKVIET(1)PENDFK;EKVIET(1)PENDFK ;;; 169.4 1.74E-05 144413000 23208.1 20617.9 20846 20493.4 21902.5 21230.4 17872.1 16124.7 22263.9 19277.8 TRUE FALSE FALSE 20487.6817 21253.11306 21972.99782 21329.20943 20286.79621 20825.46549 18561.43288 17960.27067 21346.17262 19163.13479 1.069119532 1.109062442 1.146628569 1.113033419 1.058636618 1.086746283 0.968601071 0.937230305 1.113918618 1 14.22604596 -4.649139733 5.072770922 1.057295927 0.945113363 0.506508122 0.046309507 0.161163999 6.336511785 0.007780425 0.03092025 2.24E-05 4.649139733 -0.112182564 QAVDVS(ph)PLRR ddPTM_HeLa_CUDC101_4h_R1 1 QAVDVSPLRR 10 1 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 RPS5 "40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed" 1 0 QAVDVS(1)PLRR 65.565 0.039594 6815500 2943.7 2423.3 2466.2 2781.3 3258.1 2227.8 1943.7 1298.8 2388.6 2624.6 TRUE FALSE FALSE 2598.643948 2497.959001 2599.530232 2894.733436 3017.756454 2185.308427 2018.66916 1446.650142 2290.140897 2608.988762 0.996034933 0.957443373 0.996374637 1.109523152 1.156676678 0.837607451 0.773736242 0.55448692 0.877788716 1 11.34927501 -4.648422808 1.750137565 1.011286114 0.557357468 0.756384243 0.081784325 0.148152758 0.731708263 0.010325056 0.087015232 2.25E-05 4.648422808 -0.453928646 QLVNNKDTTS(ph)FEDISPQGVSDDSSTGSR ddPTM_HeLa_CUDC101_4h_R1 2 QLVNNKDTTSFEDISPQGVSDDSSTGSR 28 1 Q3V6T2;H0Y470;A0A2U3TZV9;A0A2R8Y7B1;H7C2C6;A0A2R8Y820;A0A2R8YCU9;A0A2R8Y885;A0A2R8YDS8;A0A2R8Y7D4;H0Y7U8;A0A2R8Y5D7;Q3V6T2-5;Q3V6T2-4;Q3V6T2-2;Q3V6T2-3;A0A2R8Y802 Q3V6T2 CCDC88A Girdin 1 0 QLVNNKDT(0.096)T(0.096)S(0.793)FEDIS(0.013)PQGVS(0.001)DDSSTGS(0.001)R;QLVNNKDT(0.103)T(0.201)S(0.689)FEDIS(0.006)PQGVSDDSSTGSR ; 48.626 0.017881 49549000 1295.14 923.03 1102.72 928.69 1269.35 1072 786.27 643.76 1037.2 894.05 TRUE FALSE FALSE 1143.325653 951.4674602 1162.336379 966.5659923 1175.712579 1051.553386 816.5966973 717.0430362 994.446177 888.7321508 1.286468202 1.07058967 1.307859041 1.087578514 1.322909921 1.183206194 0.918833303 0.806815682 1.118949254 1 9.79560487 -4.647049805 3.87751112 1.15826215 0.830015429 0.592840575 0.103614455 0.141089217 3.818698827 0.017703568 0.076987237 2.25E-05 4.647049805 -0.328246721 SSINSVDGES(ph)PNGSSDR ddPTM_HeLa_CUDC101_4h_R1 2 SSINSVDGESPNGSSDR 17 0 E9PGE5;Q9NUY8-2;Q9NUY8 E9PGE5 TBC1D23 TBC1 domain family member 23 1 0 SSINSVDGES(0.523)PNGS(0.394)S(0.083)DR;SSINSVDGES(0.999)PNGS(0.001)SDR ; 193.42 2.68E-16 79256000 8806.1 7679.8 7011.1 7166.2 8103.4 7481.9 6461.4 5674.8 8790.3 7142.8 TRUE FALSE FALSE 7773.862307 7916.405535 7390.141273 7458.468611 7505.628326 7339.195223 6710.618362 6320.796294 8427.960113 7100.314308 1.094861716 1.114937338 1.040818892 1.050442035 1.057083954 1.03364371 0.945115677 0.89021359 1.186984089 1 12.79366717 -4.645200773 2.187744576 1.052160002 0.889367887 0.57775764 0.051858427 0.170129096 1.447957625 0.005904633 0.039467784 2.26E-05 4.645200773 -0.162792115 RNAET(ph)PEATTQQETDTDLPEAPPPPLEPAVIAR ddPTM_HeLa_CUDC101_4h_R1 2 RNAETPEATTQQETDTDLPEAPPPPLEPAVIAR 33 1 Q8N163-2;Q8N163;G3V119;H0YB24 Q8N163-2 CCAR2 Cell cycle and apoptosis regulator protein 2 1 0 RNAET(0.771)PEAT(0.109)T(0.109)QQET(0.01)DT(0.001)DLPEAPPPPLEPAVIAR;RNAET(0.759)PEAT(0.02)T(0.02)QQET(0.09)DT(0.111)DLPEAPPPPLEPAVIAR ; 114.68 3.11E-14 15808900 1874.45 1532.46 1618.39 1534.41 1721.05 1641.55 1808.95 1816.51 1930.77 1503.84 TRUE FALSE FALSE 1654.729812 1579.673276 1705.885059 1596.989872 1594.09157 1610.240169 1878.721807 2023.294156 1851.182843 1494.895093 1.106920359 1.056711795 1.141140316 1.068295615 1.066356815 1.077159311 1.256758295 1.353468993 1.23833629 1 10.54582853 -4.643377556 2.495614885 1.060966998 1.349620017 0.601360871 0.066488813 0.093312762 1.073533735 0.006799419 0.040199449 2.27E-05 4.643377556 0.288653019 S(ph)IQDLTVTGTEPGQVSSR ddPTM_HeLa_CUDC101_4h_R1 2 SIQDLTVTGTEPGQVSSR 18 0 Q9UG54;O43318-4;O43318-3;O43318-2;O43318 Q9UG54 DKFZp586F0420;MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 0 S(1)IQDLTVTGTEPGQVSSR;S(1)IQDLTVTGTEPGQVSSR ; 266.28 4.47E-71 239560000 1440.18 1392.25 1196.23 1107.72 1470.39 1372.81 1124.34 1015.1 1204.99 1292.37 TRUE FALSE FALSE 1271.364284 1435.143572 1260.901812 1152.89761 1361.922259 1346.625937 1167.70617 1130.654881 1155.319802 1284.682926 0.98963274 1.117118896 0.981488729 0.897418022 1.060123266 1.048216575 0.908945038 0.880104233 0.899303462 1 10.32719661 -4.643151475 5.87744381 1.003142391 0.887680214 0.300882499 0.064060175 0.147378094 6.834593312 0.007466781 0.028933018 2.27E-05 4.643151475 -0.115462177 SDPVDPDKEPEKEDVSASGPS(ph)PEATQLAK ddPTM_HeLa_CUDC101_4h_R1 2 SDPVDPDKEPEKEDVSASGPSPEATQLAK 29 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 SDPVDPDKEPEKEDVS(0.073)AS(0.073)GPS(0.844)PEAT(0.009)QLAK;SDPVDPDKEPEKEDVS(0.004)AS(0.016)GPS(0.97)PEAT(0.009)QLAK ; 73.649 2.06E-05 102532000 9953 8409.8 8638.5 7766.5 9035.2 9029.5 9036.3 8877.3 9657.9 8504.4 TRUE FALSE FALSE 8786.324428 8668.89597 9105.52344 8083.25144 8368.691297 8857.277332 9384.833118 9887.855949 9259.797274 8453.815451 1.039332415 1.025441828 1.077090397 0.956166063 0.989930682 1.047725419 1.110129878 1.16963234 1.095339415 1 13.0453869 -4.643058495 2.113549389 1.017576903 1.168467779 0.580583078 0.039040838 0.148507439 1.162958232 0.004538301 0.031570401 2.27E-05 4.643058495 0.150890876 SPS(ph)LDNPTPFPNLGPSENPLKR ddPTM_HeLa_CUDC101_4h_R1 2 SPSLDNPTPFPNLGPSENPLKR 22 1 M0R0R8;M0R0X9;M0QXC8;M0QX56;M0R3C2;M0QYT9;M0R205;M0QZB8;M0QZB7;Q14653-3;Q14653-2;Q14653;Q14653-4 M0R0R8 IRF3 Interferon regulatory factor 3 1 0 S(0.203)PS(0.743)LDNPT(0.054)PFPNLGPSENPLKR;S(0.167)PS(0.833)LDNPTPFPNLGPSENPLKR ; 117.51 3.67E-06 0 1062 1078.62 913.08 886.13 1023.52 1110.77 1461.18 1557.45 1237.29 1341.48 TRUE FALSE FALSE 937.5139699 1111.851004 962.4438667 922.2702116 948.0169687 1089.583913 1517.538202 1734.743813 1186.288383 1333.500817 0.703047166 0.833783519 0.72174224 0.691615783 0.710923425 0.817085298 1.138010703 1.30089445 0.889604541 1 10.38100299 -4.642735426 3.252882736 0.81972308 1.275423558 0.763250363 0.095439161 0.123676044 2.464844035 0.018810122 0.09054085 2.28E-05 4.642735426 0.455700478 KSPSSDS(ph)WTCADTSTER ddPTM_HeLa_CUDC101_4h_R1 1 KSPSSDSWTCADTSTER 17 1 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHH7;Q8N6T3-4;H0YIQ0 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 KS(0.001)PS(0.016)S(0.275)DS(0.556)WT(0.151)CADT(0.002)STER 111.31 0.0019642 14898000 1994.6 1622 1764.1 1667 1826 1648.7 1914.1 1870.4 1847.6 1696.9 TRUE FALSE FALSE 1760.796012 1671.971897 1859.472582 1734.987465 1691.299618 1617.253794 1987.927478 2083.318776 1771.441146 1686.806763 1.0438635 0.991205355 1.102362536 1.028563261 1.002663527 0.958766487 1.17851524 1.235066648 1.05017432 1 10.720079 -4.640817859 5.281875701 1.021004181 1.220946454 0.797343534 0.037581991 0.058794485 2.412353209 0.005127215 0.020247302 2.29E-05 4.640817859 0.199942273 LHDFFSYLMDHFIPS(ph)S(ph)HNDRDFLT(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 LHDFFSYLMDHFIPSSHNDRDFLTR 25 1 E7EPQ9;O14830-2;O14830 E7EPQ9 PPEF2 Serine/threonine-protein phosphatase with EF-hands 2 3 0 LHDFFS(0.001)Y(0.003)LMDHFIPS(0.998)S(0.998)HNDRDFLT(1)R 43.801 0.028467 25787000 646.37 639.05 696.73 637.33 876.57 856.7 710.83 910.49 624.84 649.31 TRUE FALSE FALSE 570.6034884 658.738373 734.3973313 663.3230722 811.9071775 840.3598749 738.2469512 1014.136501 599.0838307 645.4478752 0.884042709 1.020591125 1.137810441 1.027694253 1.257897359 1.301979458 1.143774702 1.571213633 0.928167639 1 9.334156782 -4.6407167 0.438521418 0.941226604 1.697744497 0.748336647 0.097965332 1.386237672 0.223425586 0.025727676 0.512475716 2.29E-05 4.6407167 0.756517894 NSLLAGGDDDTMSVISGIS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 NSLLAGGDDDTMSVISGISSR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 0 NSLLAGGDDDTMSVISGIS(0.911)S(0.089)R 276.85 8.80E-89 22173000 1974.6 1650.6 1293.5 1753.2 2116.3 1877.3 1887.4 1951.5 1755.3 1620.4 TRUE FALSE FALSE 1743.140381 1701.45303 1363.430523 1824.703074 1960.184765 1841.49363 1960.19765 2173.650872 1682.945791 1610.761789 1.082183842 1.056303323 0.846450749 1.132819941 1.216930262 1.143243925 1.216938261 1.3494552 1.04481358 1 10.65352744 -4.640334889 0.619932302 1.028644202 1.437109035 0.634157704 0.07916069 1.199378116 0.414213578 0.015270329 0.316613469 2.29E-05 4.640334889 0.408464832 TASES(ph)ISNLSEAGSIK ddPTM_HeLa_CUDC101_4h_R1 1 TASESISNLSEAGSIK 16 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 T(0.006)AS(0.052)ES(0.471)IS(0.471)NLSEAGSIK 198.98 2.21E-16 36689000 1960.1 1995.3 1584.7 1746.7 1917.6 2185.1 2093.9 2251.4 1935.2 1864.5 TRUE FALSE FALSE 1730.340049 2056.772828 1670.373675 1817.937976 1776.142468 2143.422858 2174.662424 2507.690276 1855.430237 1853.409871 0.933598162 1.109723683 0.901243541 0.980861279 0.958310677 1.156475366 1.173330551 1.353014417 1.00109008 1 10.85596625 -4.64010368 1.1155284 0.972520607 1.397964845 0.790888275 0.060533448 0.290785667 0.438487994 0.008820335 0.123315285 2.29E-05 4.64010368 0.425444238 GTNSS(ph)DSEELSAGESITK ddPTM_HeLa_CUDC101_4h_R1 2 GTNSSDSEELSAGESITK 18 0 H7C5R6;Q4LE39-2;Q4LE39 H7C5R6 ARID4B AT-rich interactive domain-containing protein 4B 1 0 GTNS(0.027)S(0.973)DSEELSAGESITK;GT(0.001)NS(0.083)S(0.911)DS(0.005)EELSAGESITK ; 316.88 2.21E-145 33240000 7710.5 7190.3 7353.8 7081.1 7625.2 5728.6 4909.3 3554.2 5446 5302.2 TRUE FALSE FALSE 6806.686878 7411.82462 7751.368672 7369.897865 7062.704188 5619.336499 5098.653346 3958.795761 5221.513575 5270.662279 1.291429145 1.406241612 1.470663128 1.398286871 1.340003175 1.066153778 0.967364835 0.751100251 0.990675042 1 12.36376854 -4.639216649 1.863045843 1.217309968 0.754964103 0.505401139 0.16195487 0.367951642 2.110869492 0.028374158 0.22795045 2.30E-05 4.639216649 -0.462345865 RIDT(ph)PSLEEPSDLEELEQFAK ddPTM_HeLa_CUDC101_4h_R1 3 RIDTPSLEEPSDLEELEQFAK 21 1 A0A0C4DG88;P14859-4;P14859-5;P14859-3;P14859;P14859-2;P14859-6 A0A0C4DG88 POU2F1 "POU domain protein;POU domain, class 2, transcription factor 1" 1 0 RIDT(0.929)PS(0.071)LEEPSDLEELEQFAK;RIDT(0.497)PS(0.497)LEEPS(0.006)DLEELEQFAK;RIDT(0.933)PS(0.067)LEEPSDLEELEQFAK ;; 135.17 5.25E-06 32762500 8697.5 7003.5 6857.7 6068.7 7755.2 7531.4 8740.4 9003.3 7877.6 7157.6 TRUE FALSE FALSE 7677.992235 7219.269534 7228.448005 6316.207817 7183.114347 7387.751093 9077.520156 10028.19928 7552.881994 7115.026277 1.079123525 1.014651142 1.015941154 0.887727968 1.009569616 1.038330823 1.275823841 1.409439528 1.061539578 1 12.79665337 -4.639186802 2.678664266 1.021056628 1.398851046 0.882366478 0.049184934 0.076783095 1.030299171 0.007926604 0.044387436 2.30E-05 4.639186802 0.377794419 SS(ph)SETILSSLAGSDIVK ddPTM_HeLa_CUDC101_4h_R1 1 SSSETILSSLAGSDIVK 17 0 Q01850 Q01850 CDR2 Cerebellar degeneration-related protein 2 1 0 S(0.163)S(0.556)S(0.28)ETILSSLAGSDIVK 314.68 1.75E-144 51176000 4511.6 4432.2 4074.4 3636.1 4950.3 4998.8 4616.3 4422.8 3648 3906 TRUE FALSE FALSE 3982.757087 4568.750829 4294.674388 3784.395875 4585.126231 4903.456219 4794.352237 4926.273674 3497.627896 3882.766938 1.025752292 1.17667398 1.106086061 0.9746647 1.180891438 1.262876783 1.234777238 1.268753379 0.900808097 1 11.9228694 -4.638507447 0.319784839 0.995756872 1.467782741 0.678914578 0.070502525 2.408578745 0.212238296 0.027657975 0.427070988 2.30E-05 4.638507447 0.472025868 GPPDFSSDEEREPT(ph)PVLGSGAAAAGR ddPTM_HeLa_CUDC101_4h_R1 2 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 P42166;P42167;G5E972;P42167-2;P42167-3 P42166;P42167 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 GPPDFS(0.001)S(0.001)DEEREPT(0.947)PVLGS(0.051)GAAAAGR;GPPDFS(0.002)S(0.004)DEEREPT(0.96)PVLGS(0.035)GAAAAGR ; 93.416 7.28E-06 352650000 3654.2 3624.4 3571.7 3919.3 3776.4 3791.8 4497.1 4488.6 3672.9 4754.9 TRUE FALSE FALSE 3225.860215 3736.063468 3764.796906 4079.145995 3497.822496 3719.477733 4670.554653 4999.56408 3521.501507 4726.617643 0.682488083 0.790430653 0.796509722 0.863015861 0.740026539 0.786921645 0.988138878 1.057746672 0.745036255 1 12.20659245 -4.637526215 4.513258125 0.828835731 1.041915399 0.509132035 0.084721107 0.19131318 6.456485272 0.0169639 0.069940328 2.30E-05 4.637526215 0.213079667 T(ph)PSPTPQPTSPQR ddPTM_HeLa_CUDC101_4h_R1 1 TPSPTPQPTSPQR 13 0 O15021;O15021-2;O15021-3;O15021-6;H7C1I9 O15021 MAST4 Microtubule-associated serine/threonine-protein kinase 4 1 0 T(0.955)PS(0.043)PT(0.002)PQPTSPQR 109.6 0.0014061 0 710.82 436.54 452.24 445.98 523.03 476.66 554.85 524.22 572.66 462.7 TRUE FALSE FALSE 627.4987571 449.98928 476.6894624 464.1689921 484.4471189 467.5685047 576.2507504 583.8950858 549.0547124 459.9478398 1.364282431 0.978348502 1.036398959 1.009177459 1.053265342 1.016568541 1.252861087 1.269481092 1.19373256 1 8.845326452 -4.637325267 9.169287178 1.123541796 1.265090342 0.216250796 0.116754267 0.450173432 33.70973929 0.02218924 0.083365113 2.31E-05 4.637325267 0.141548546 QMS(ph)LCGTPEK ddPTM_HeLa_CUDC101_4h_R1 1 QMSLCGTPEK 10 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 QMS(0.844)LCGT(0.156)PEK 98.04 0.01838 13633000 3131.7 2850.9 2481.4 2705.5 3231.5 2609.6 2065.8 1714.9 2962.1 2153.5 TRUE FALSE FALSE 2764.606873 2938.73285 2615.55199 2815.841984 2993.118683 2559.826228 2145.478598 1910.117284 2840.000984 2140.690886 1.291455432 1.37279645 1.221826097 1.315389346 1.398202189 1.195794425 1.002236526 0.8922901 1.326674955 1 11.06386077 -4.636285941 3.380947219 1.19778921 0.911532989 0.464600439 0.122685348 0.226177055 4.841166892 0.022288769 0.105565549 2.31E-05 4.636285941 -0.28625622 KAPPPPISPTQLSDVS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 KAPPPPISPTQLSDVSSPR 19 1 Q9P0K7-3;Q9P0K7;Q9P0K7-2 Q9P0K7-3 RAI14 Ankycorbin 1 0 KAPPPPISPT(0.001)QLS(0.148)DVS(0.537)S(0.314)PR 133.15 2.28E-05 19582000 1521.5 1216 1153.4 1182 1658.8 1407.6 1793 1835.8 1268.8 1732.5 TRUE FALSE FALSE 1343.152076 1253.463519 1215.756293 1230.207069 1536.433629 1380.752375 1862.156611 2044.780051 1216.499527 1722.195013 0.779907076 0.727829026 0.705934162 0.714325068 0.892136847 0.801739852 1.081269308 1.187310401 0.706365724 1 10.7500328 -4.636145538 4.075759321 0.850160701 1.16581024 0.603884833 0.103906893 0.14085835 4.116248351 0.01754936 0.075299429 2.31E-05 4.636145538 0.315649539 SYSS(ph)PDITQAIQEEEKR ddPTM_HeLa_CUDC101_4h_R1 2 SYSSPDITQAIQEEEKR 17 1 P40818;P40818-2 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 SYS(0.113)S(0.885)PDIT(0.002)QAIQEEEKR;SYS(0.029)S(0.971)PDITQAIQEEEKR ; 264 4.57E-70 44722000 2573.6 2362.09 2125.2 2205.27 2416.21 2281.22 2301.7 2173.5 2267.87 2322.08 TRUE FALSE FALSE 2271.926509 2434.863193 2240.09474 2295.210443 2237.971002 2237.709529 2390.47734 2420.922454 2174.387439 2308.268165 0.984255878 1.05484416 0.970465553 0.994343065 0.969545496 0.969432219 1.035615089 1.04880468 0.941999492 1 11.17259512 -4.636022453 6.102616644 0.992585387 1.045396552 0.370595825 0.028540853 0.135923846 6.58544529 0.003165864 0.012216589 2.31E-05 4.636022453 0.052811165 NLYPSSS(ph)PYTR ddPTM_HeLa_CUDC101_4h_R1 1 NLYPSSSPYTR 11 0 Q9Y2Z0-2;Q9Y2Z0 Q9Y2Z0-2 SUGT1 Suppressor of G2 allele of SKP1 homolog 1 0 NLYPS(0.022)S(0.076)S(0.902)PYTR 184.96 1.03E-10 91591000 5300.7 4294 4468.4 4803.7 4892 4792.2 3677.4 3078.1 4858.7 4516.3 TRUE FALSE FALSE 4679.359981 4426.29305 4709.97522 4999.615649 4531.126906 4700.796769 3819.23855 3428.498462 4658.42233 4489.436847 1.042304445 0.98593503 1.049123839 1.113639822 1.009286256 1.047079384 0.850716622 0.763681187 1.037640686 1 12.13231877 -4.635395886 3.503086506 1.02757024 0.778016713 0.874796277 0.035056091 0.058480125 1.334461783 0.005173826 0.024007331 2.32E-05 4.635395886 -0.249553527 RT(ph)GSNISGASSDISLDEQYK ddPTM_HeLa_CUDC101_4h_R1 1 RTGSNISGASSDISLDEQYK 20 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 RT(0.488)GS(0.488)NIS(0.018)GAS(0.005)S(0.001)DISLDEQYK 88.571 0.021317 28771000 2004.1 1235 1734.5 1535 1344.7 1841 1079.9 832.39 1634 1565.9 TRUE FALSE FALSE 1769.182436 1273.048886 1828.272317 1597.603935 1245.50416 1805.885992 1121.552105 927.145913 1566.645828 1556.585957 1.136578695 0.817846827 1.174539901 1.026351245 0.800151225 1.160158219 0.720520508 0.595627828 1.006462779 1 10.60416953 -4.634926427 5.00263414 1.039169382 0.62511726 0.571334142 0.123999592 0.09346246 3.604612749 0.016748419 0.067083799 2.32E-05 4.634926427 -0.414052122 S(ph)LESVLSLGPR ddPTM_HeLa_CUDC101_4h_R1 2 SLESVLSLGPR 11 0 Q13470-2;Q13470 Q13470-2 TNK1 Non-receptor tyrosine-protein kinase TNK1 1 0 S(1)LESVLSLGPR;S(0.887)LES(0.11)VLS(0.003)LGPR ; 125.36 0.0030832 5734000 817.28 567.09 838.4 545.03 696.03 657.86 524.02 460.83 794.54 676.01 TRUE FALSE FALSE 721.4796773 584.5613707 883.72644 567.2586792 644.6852536 645.3124166 544.2316269 513.2890245 761.7887249 671.9890625 1.073647947 0.869897151 1.315090512 0.844148679 0.959368671 0.960301964 0.809881674 0.763835385 1.133632625 1 9.392293941 -4.634851133 0.765833125 1.035001034 0.668770377 0.392077851 0.123680424 1.260939364 0.721119556 0.018391775 0.3518527 2.32E-05 4.634851133 -0.366230657 NSPTFKS(ph)FEEKVENLK ddPTM_HeLa_CUDC101_4h_R1 1 NSPTFKSFEEKVENLK 16 2 H0YC42;P55327-2;P55327-4;P55327;P55327-7;P55327-5;P55327-6;P55327-3;E5RK35 H0YC42 TPD52 Tumor protein D52 1 0 NSPT(0.016)FKS(0.983)FEEKVENLK 107.69 0.0017126 36855000 1162.5 1158.8 983.36 1249 1554.9 1725.6 1908.4 2151.5 1083.2 1805.8 TRUE FALSE FALSE 1026.233512 1194.501254 1036.523416 1299.939619 1440.198125 1692.687055 1982.007627 2396.418063 1038.550038 1795.059021 0.571699036 0.665438429 0.577431385 0.724176533 0.802312407 0.942970139 1.104146217 1.33500795 0.578560384 1 10.80981557 -4.633220438 1.316931164 0.759450126 1.39452412 0.714620013 0.131357916 0.451363106 1.048806269 0.026635975 0.31921367 2.33E-05 4.633220438 0.635073994 MYLQQDELEEEEDERGPT(ph)PPVR ddPTM_HeLa_CUDC101_4h_R1 1 MYLQQDELEEEEDERGPTPPVR 22 1 A0A0A0MSX4;Q9Y6N7-4;Q9Y6N7-3;Q9Y6N7;Q9Y6N7-2;H7C545;A0A087WZ85;A0A087WTM1;Q9Y6N7-6;Q9Y6N7-5 A0A0A0MSX4 ROBO1 Roundabout homolog 1 1 0 MYLQQDELEEEEDERGPT(1)PPVR 84.975 0.00085012 8293800 2018.1 2158.8 1728.1 1531.4 2223.2 1958.7 1543.9 1393 1612.5 1698.1 TRUE FALSE FALSE 1781.541377 2225.310069 1821.526313 1593.857111 2059.198965 1921.341061 1603.44874 1551.573489 1546.032067 1687.999626 1.055415742 1.318311945 1.079103505 0.944228356 1.219904871 1.138235478 0.949910602 0.919178811 0.915895978 1 10.72109887 -4.6331365 6.748907522 1.065201587 0.927183538 0.197604374 0.116160748 0.260685751 14.17634504 0.015605514 0.059573602 2.33E-05 4.6331365 -0.138018049 RSDS(ph)LLSFR ddPTM_HeLa_CUDC101_4h_R1 2 RSDSLLSFR 9 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 RS(0.292)DS(0.708)LLSFR;RSDS(1)LLSFR ; 120.55 0.011386 153966000 5521.4 4356.6 3651.3 4096.6 4866.2 4451.1 4893.3 4879.7 4230.3 4041.3 TRUE FALSE FALSE 4874.189862 4490.821682 3848.700323 4263.677055 4507.230121 4366.202684 5082.03622 5435.185324 4055.925243 4017.262168 1.213311369 1.117881157 0.958040616 1.061339011 1.12196564 1.08686028 1.26504968 1.352957586 1.009624235 1 11.9719969 -4.632987811 2.901685032 1.091141965 1.344516788 0.640247142 0.071312505 0.16948325 2.689105884 0.012742723 0.067569667 2.33E-05 4.632987811 0.253374823 SRPTS(ph)EGSDIES(ph)TEPQK ddPTM_HeLa_CUDC101_4h_R1 1 SRPTSEGSDIESTEPQK 17 1 Q4G0J3;Q4G0J3-3;D6RFF0;H0YA82 Q4G0J3 LARP7 La-related protein 7 2 0 SRPT(0.002)S(0.77)EGS(0.228)DIES(0.804)T(0.196)EPQK 200.71 1.36E-15 65140000 6694.2 5473.2 5838.3 5610.7 6530.6 6069 6130.6 5841.4 6598.4 6341.8 TRUE FALSE FALSE 5909.516024 5641.822805 6153.936158 5839.528598 6048.850649 5953.243937 6367.059296 6506.361364 6326.411159 6304.078692 0.937411526 0.89494803 0.976183271 0.926309598 0.959513823 0.944347973 1.009990453 1.032087587 1.003542543 1 12.62206983 -4.632726271 4.577428389 0.959595 1.027138668 0.411715606 0.031497854 0.170581747 5.886708232 0.004837691 0.019901743 2.33E-05 4.632726271 0.067543668 ALVHQLS(ph)NESR ddPTM_HeLa_CUDC101_4h_R1 2 ALVHQLSNESR 11 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 ALVHQLS(1)NESR;ALVHQLS(0.995)NES(0.005)R ; 89.663 0.018908 11019900 2270.92 1622.41 1486.48 1365.71 1635.97 2174.72 2329.33 2531.5 1647.03 2122.42 TRUE FALSE FALSE 2004.7262 1672.394529 1566.843605 1421.409557 1515.287752 2133.240839 2419.173038 2819.675727 1579.138726 2109.795751 0.950199183 0.792680774 0.742651797 0.673719035 0.718215378 1.011112492 1.146638501 1.336468578 0.748479432 1 11.04288762 -4.632161075 2.225952895 0.905473464 1.323515318 0.59495477 0.130156171 0.240713516 2.116952221 0.021575755 0.145723201 2.33E-05 4.632161075 0.418041853 GLMAGGRPEGQYS(ph)EDEDTDTDEYKEAK ddPTM_HeLa_CUDC101_4h_R1 4 GLMAGGRPEGQYSEDEDTDTDEYKEAK 27 2 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;H0YC88 H0YE35 RIC8A Synembryn-A 1 0 GLMAGGRPEGQY(0.046)S(0.947)EDEDT(0.006)DTDEYKEAK;GLMAGGRPEGQY(0.44)S(0.492)EDEDT(0.043)DT(0.023)DEY(0.002)KEAK;GLMAGGRPEGQY(0.041)S(0.956)EDEDT(0.003)DTDEYKEAK;GLMAGGRPEGQY(0.153)S(0.845)EDEDT(0.002)DTDEYKEAK ;;; 115.96 1.48E-08 94494000 6294.47 6563.9 6009.17 5978.12 6196.44 5615.96 4885.12 4011.36 6289.41 6162.99 TRUE FALSE FALSE 5556.641768 6766.125979 6334.043907 6221.933573 5739.340966 5508.84492 5073.540715 4467.997008 6030.157858 6126.332261 0.907009534 1.104433402 1.033904731 1.015604983 0.936831488 0.899207664 0.828153045 0.729310265 0.984301471 1 12.5808079 -4.631715299 1.255451601 0.976835437 0.700410638 0.739182553 0.052740379 0.403811939 0.825645962 0.009538666 0.120687984 2.33E-05 4.631715299 -0.276424799 (ac)MET(ph)MASPGKDNYR ddPTM_HeLa_CUDC101_4h_R1 11 METMASPGKDNYR 13 1 S4R3E5;O60684 S4R3E5 KPNA6 Importin subunit alpha-7 1 0 MET(0.776)MAS(0.224)PGKDNYR;MET(0.776)MAS(0.224)PGKDNYR;MET(0.877)MAS(0.123)PGKDNYR;MET(0.987)MAS(0.013)PGKDNYR;MET(0.989)MAS(0.011)PGKDNYR;MET(0.988)MAS(0.012)PGKDNYR;MET(0.982)MAS(0.018)PGKDNYR;MET(0.56)MAS(0.44)PGKDNYR;MET(0.963)MAS(0.037)PGKDNYR;MET(0.924)MAS(0.076)PGKDNYR;MET(0.742)MAS(0.258)PGKDNYR ;;;;;;;;;; 139.74 2.07E-07 1358677000 39510.5 35168.3 31899.5 32135.4 37714.5 34912.2 29295.3 25284.3 36218.1 34629.6 TRUE FALSE FALSE 34879.13908 36251.79364 33624.08346 33446.02051 34932.37647 34246.30795 30425.22953 28162.56251 34725.17459 34423.6216 1.013232701 1.053108068 0.976773561 0.971600865 1.014779237 0.994849071 0.883847432 0.818117362 1.00876006 1 15.07111127 -4.631437601 2.473861223 1.005905379 0.820535779 0.896278177 0.021415593 0.067426543 0.75642328 0.003078041 0.018781268 2.34E-05 4.631437601 -0.1853696 Y(ph)RSDIHTEAVQAALAK ddPTM_HeLa_CUDC101_4h_R1 1 YRSDIHTEAVQAALAK 16 1 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 0 Y(0.946)RS(0.054)DIHTEAVQAALAK 165.89 3.70E-05 44778000 2449.1 1707.7 1186.1 1820.7 1862.7 1748.8 1952.5 1903.9 1503.4 1604.1 TRUE FALSE FALSE 2162.020211 1760.312213 1250.224154 1894.956016 1725.292332 1715.444554 2027.808579 2120.63228 1441.429216 1594.558742 1.355873668 1.103949429 0.784056505 1.188388967 1.081987315 1.075811451 1.271705159 1.329917942 0.90396746 1 10.63894153 -4.63105245 5.026924544 1.129960512 1.316113527 0.182392573 0.157626487 0.299524379 11.67950967 0.024245587 0.09712649 2.34E-05 4.63105245 0.186153016 S(ph)RRGFSMLVRLVS(ph)NSR ddPTM_HeLa_CUDC101_4h_R1 1 SRRGFSMLVRLVSNSR 16 3 H3BP50 H3BP50 DDX19A 2 0 S(0.967)RRGFS(0.033)MLVRLVS(0.758)NS(0.242)R 67.648 0.014072 8822800 1570.6 1228.6 1354.8 1428.3 1326.3 1201.6 919.27 873.62 1655.9 1782.5 TRUE FALSE FALSE 1386.496649 1266.45171 1428.044586 1486.552248 1228.461491 1178.681482 954.7265518 973.0693695 1587.643101 1771.897611 0.782492533 0.714743167 0.805940805 0.83896058 0.693302753 0.665208573 0.53881587 0.549167945 0.896012891 1 10.79107952 -4.630997619 0.098979987 1.233777175 2.67E-17 0.802619983 0.061636575 13.85052025 0.255456516 0.834559817 2.745553201 2.34E-05 4.630997619 -1.233777175 RPES(ph)FTTPEGPKPR ddPTM_HeLa_CUDC101_4h_R1 1 RPESFTTPEGPKPR 14 2 F8W8D3;Q14493;H7C4H8 F8W8D3 SLBP Histone RNA hairpin-binding protein 1 0 RPES(0.94)FT(0.03)T(0.03)PEGPKPR 64.476 0.025073 41193000 1558.4 1234.6 1018.2 1354.9 1218.2 1228.6 816.01 594.77 1220.3 1051.8 TRUE FALSE FALSE 1375.726714 1272.636563 1073.246972 1410.158678 1128.335813 1205.166502 847.483779 662.4762127 1169.998717 1045.543847 1.315800115 1.217200566 1.026496378 1.348732225 1.079185552 1.152669499 0.810567421 0.633618776 1.119033622 1 10.03003785 -4.630284818 2.572546429 1.159564474 0.640653531 0.730303527 0.10814217 0.142400244 1.742882363 0.019073002 0.112525866 2.34E-05 4.630284818 -0.518910943 GEAAAERPGEAAVAS(ph)SPSKANGQENGHVK ddPTM_HeLa_CUDC101_4h_R1 2 GEAAAERPGEAAVASSPSKANGQENGHVK 29 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEAAAERPGEAAVAS(0.47)S(0.354)PS(0.177)KANGQENGHVK;GEAAAERPGEAAVAS(0.48)S(0.48)PS(0.04)KANGQENGHVK ; 84.58 3.85E-07 250451000 6717.8 5726.2 6027.5 5800.1 6574.2 6081.2 4942.6 4212.7 6127.5 5862.2 TRUE FALSE FALSE 5930.349668 5902.617435 6353.364882 6036.653148 6089.234364 5965.211242 5133.237738 4692.25674 5874.921856 5827.331374 1.017678468 1.012919475 1.090270052 1.035920692 1.044943899 1.023660894 0.880889966 0.805215362 1.008166771 1 12.50861964 -4.629675356 3.10778285 1.020390522 0.815109947 0.893777152 0.026083213 0.064302707 1.172121934 0.0041914 0.021213445 2.35E-05 4.629675356 -0.205280575 SMS(ph)AEDLLER ddPTM_HeLa_CUDC101_4h_R1 4 SMSAEDLLER 10 0 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 0 S(0.05)MS(0.95)AEDLLER;S(0.004)MS(0.996)AEDLLER;S(0.007)MS(0.993)AEDLLER;S(0.336)MS(0.664)AEDLLER ;;; 134.75 0.0017936 18833300 7676.2 6266.5 5971.2 5867.5 7373.3 7396.3 7261 7340.2 6983 7189.2 TRUE FALSE FALSE 6776.407472 6459.563437 6294.021134 6106.802011 6829.386349 7255.227901 7541.059202 8175.778698 6695.157784 7146.438319 0.948221641 0.903885705 0.880721396 0.854523854 0.955634967 1.015222909 1.055219239 1.144035439 0.936852385 1 12.80300869 -4.628219131 1.563048722 0.952374977 1.151316017 0.694655516 0.045549629 0.340590049 1.235828472 0.008330459 0.083665679 2.35E-05 4.628219131 0.19894104 KET(ph)ES(ph)EAEDNLDDLEK ddPTM_HeLa_CUDC101_4h_R1 2 KETESEAEDNLDDLEK 16 1 A9Z1X7;Q8IYB3;Q8IYB3-2 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KET(1)ES(1)EAEDNLDDLEK;KET(1)ES(1)EAEDNLDDLEK ; 98.269 0.0055724 507110000 15787.5 13732.8 13464.9 13527.7 15241.2 16276.9 16873 17523.5 15672.7 15942.5 TRUE FALSE FALSE 13936.91318 14155.89129 14192.85322 14079.41808 14116.88704 15966.44525 17523.79726 19518.30441 15026.66467 15847.6733 0.879429612 0.893247294 0.895579619 0.888421777 0.890786097 1.007494599 1.105764672 1.231619559 0.948193743 1 13.95198342 -4.627782881 1.719089069 0.927310731 1.24282496 0.880088063 0.038257002 0.174901227 0.811017715 0.007935455 0.071662219 2.36E-05 4.627782881 0.315514229 SNEEGS(ph)EEKGPEVR ddPTM_HeLa_CUDC101_4h_R1 2 SNEEGSEEKGPEVR 14 1 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 1 0 S(0.001)NEEGS(0.999)EEKGPEVR;SNEEGS(1)EEKGPEVR ; 137.32 0.003043 23032300 4769.7 4492.2 4758.6 4759.6 4981.9 4728.7 4943.4 4755.7 5352.6 5311.2 TRUE FALSE FALSE 4210.602996 4630.599357 5015.86431 4953.717061 4614.395162 4638.507926 5134.068594 5297.069665 5131.963562 5279.608746 0.797521786 0.877072446 0.9500447 0.938273516 0.874003242 0.878570392 0.972433535 1.003307237 0.972034825 1 12.3662153 -4.62772789 4.772501151 0.90274981 0.996257313 0.230200902 0.055704564 0.265630683 9.753780082 0.010647774 0.043334878 2.36E-05 4.62772789 0.093507503 GTPAGT(ph)TPGASQAPK ddPTM_HeLa_CUDC101_4h_R1 1 GTPAGTTPGASQAPK 15 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 GTPAGT(0.498)T(0.498)PGAS(0.004)QAPK 193.45 1.33E-23 0 2439.7 1822.2 1631.8 1690.1 2101.7 1647.4 1460 745.29 1994.7 1794.8 TRUE FALSE FALSE 2153.722064 1878.339822 1720.020044 1759.029583 1946.661778 1615.97859 1516.312689 830.130801 1912.477622 1784.12445 1.2071591 1.052807624 0.964069544 0.985934352 1.091102013 0.905754411 0.849891771 0.465287498 1.071941827 1 10.80100054 -4.063219642 0.904049855 1.081993671 1.08E-21 0.852808014 0.072946323 0.959267866 0.461867741 0.014845692 1.109289398 8.65E-05 4.063219642 -1.081993671 down RVS(ph)SDEEHTVDSCISDMK ddPTM_HeLa_CUDC101_4h_R1 1 RVSSDEEHTVDSCISDMK 18 1 H7C150;H7C183;Q70CQ2-3;Q70CQ2-2;Q70CQ2 H7C150 USP34 Ubiquitin carboxyl-terminal hydrolase 34 1 0 RVS(0.586)S(0.407)DEEHT(0.007)VDSCISDMK 60.347 0.022078 3890200 1219.6 1015.3 1154.6 1068 1466.2 1082.6 897.96 756.72 1245.2 982.76 TRUE FALSE FALSE 1076.640337 1046.58019 1217.021168 1111.557656 1358.041347 1061.951209 932.594618 842.861946 1193.872329 976.9144998 1.102082462 1.071311962 1.245780638 1.137824914 1.390133269 1.087046214 0.954632794 0.862779646 1.222084767 1 9.932088492 -4.627535436 3.373872577 1.097852993 0.879390685 0.355214643 0.116258892 0.235254926 5.022411414 0.017605422 0.084456338 2.36E-05 4.627535436 -0.218462307 YKDNPFSLGES(ph)FGSR ddPTM_HeLa_CUDC101_4h_R1 1 YKDNPFSLGESFGSR 15 1 Q8N6H7;E9PMU9;H0YDN9;A0A0D9SF70;G5E9L0;Q8N6H7-3;Q8N6H7-2;E9PQP3 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 0 YKDNPFSLGES(0.5)FGS(0.5)R 77.137 0.014541 17106000 2112.8 1637 1955.8 1921.5 2240.1 2112.8 2640.2 2786.4 1802.5 2388.4 TRUE FALSE FALSE 1865.140787 1687.43403 2061.536464 1999.867075 2074.852286 2072.50186 2742.033398 3103.592513 1728.200187 2374.193691 0.785589143 0.710739834 0.868310143 0.842335267 0.873918709 0.87292872 1.154932476 1.307219594 0.727910361 1 11.21322192 -4.627467204 2.855509847 0.872979844 1.292880715 0.771937543 0.085829795 0.115929096 1.776781793 0.014131778 0.076627182 2.36E-05 4.627467204 0.419900871 EALAEAALES(ph)PRPALVR ddPTM_HeLa_CUDC101_4h_R1 4 EALAEAALESPRPALVR 17 1 O14745;J3QRP6;O14745-2 O14745 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 0 EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR ;;; 127.01 0.00015547 2685120000 10953 9951.8 10316.6 9469.5 10637.2 9388.8 8110.5 6709.6 9888.6 10386.8 TRUE FALSE FALSE 9669.105944 10258.40316 10874.3466 9855.707141 9852.514948 9209.724283 8423.324702 7473.393743 9480.987723 10325.01885 0.936473442 0.993548129 1.053203559 0.954546164 0.954236994 0.891981353 0.815816884 0.723814053 0.918253793 1 13.3338568 -4.627414474 1.142721633 0.977308891 0.682381323 0.849812903 0.035124298 0.254895186 0.404796462 0.005442503 0.076548914 2.36E-05 4.627414474 -0.294927568 ASYDVSDSGQLEHVQPWS(ph)V ddPTM_HeLa_CUDC101_4h_R1 2 ASYDVSDSGQLEHVQPWSV 19 0 Q01813-2;Q01813;B1APP6 Q01813-2 PFKP "ATP-dependent 6-phosphofructokinase, platelet type" 1 0 ASYDVSDSGQLEHVQPWS(1)V;ASYDVSDSGQLEHVQPWS(1)V ; 91.065 0.0032753 25633000 2335.31 2238.05 1927.94 1669.35 2602.29 2098.73 2549.31 2587.38 2182.49 2336.91 TRUE FALSE FALSE 2061.568502 2307.001668 2032.170268 1737.433309 2410.324251 2058.700222 2647.637741 2881.916881 2092.526838 2323.009955 0.887455733 0.993108817 0.874800499 0.747923316 1.037586708 0.886221007 1.139744466 1.240596009 0.900782553 1 11.18177962 -4.626705296 3.942555527 0.933023977 1.221676221 0.657695037 0.079585455 0.102384431 2.860525424 0.011443839 0.05026145 2.36E-05 4.626705296 0.288652244 TRDDGDEEGLLTHSEEELEHS(ph)QDTDADDGALQ ddPTM_HeLa_CUDC101_4h_R1 3 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9-2;Q9UKM9 Q9UKM9-2 RALY RNA-binding protein Raly 1 0 TRDDGDEEGLLT(0.03)HS(0.102)EEELEHS(0.434)QDT(0.434)DADDGALQ;TRDDGDEEGLLT(0.002)HS(0.058)EEELEHS(0.47)QDT(0.47)DADDGALQ;TRDDGDEEGLLT(0.025)HS(0.102)EEELEHS(0.437)QDT(0.437)DADDGALQ ;; 78.45 1.70E-06 58863000 2714.98 2366.89 1826.45 2388.91 2674.86 2731 1657.36 1254.13 2631.94 2531.48 TRUE FALSE FALSE 2396.73416 2439.811075 1925.193412 2486.340076 2477.540907 2678.910725 1721.28493 1396.89509 2523.450319 2516.422644 0.95243705 0.969555365 0.765051696 0.988045502 0.984548805 1.064571061 0.684020601 0.555111477 1.002792724 1 11.29715853 -4.625046479 4.685356256 0.966889018 0.583852849 0.779983424 0.074730667 0.063261195 2.278920006 0.010334902 0.042361677 2.37E-05 4.625046479 -0.383036169 AGTLSITEFADMLSGNAGGFRS(ph)R ddPTM_HeLa_CUDC101_4h_R1 3 AGTLSITEFADMLSGNAGGFRSR 23 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 AGTLSITEFADMLS(0.001)GNAGGFRS(0.999)R;AGTLSITEFADMLS(0.016)GNAGGFRS(0.984)R;AGTLSITEFADMLS(0.035)GNAGGFRS(0.965)R ;; 112.55 2.21E-05 168957000 2695.3 3268.06 2884.99 3199.11 4692.28 4108.93 4266.98 4587.38 3127.22 4909.51 TRUE FALSE FALSE 2379.36102 3368.745055 3040.961286 3329.583534 4346.139853 4030.559006 4431.558848 5109.588796 2998.314668 4880.308016 0.487543207 0.690273041 0.623108475 0.682248645 0.890546219 0.825882094 0.908049007 1.046980801 0.614369966 1 12.25275649 -4.624391778 0.992160242 0.735350307 1.094735968 0.406327462 0.134670419 1.506105688 1.647567987 0.030991605 0.500442154 2.37E-05 4.624391778 0.359385662 VAPGPSSGSTPGQVPGSS(ph)ALSSPR ddPTM_HeLa_CUDC101_4h_R1 1 VAPGPSSGSTPGQVPGSSALSSPR 24 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-5 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 VAPGPSSGSTPGQVPGS(0.031)S(0.598)ALS(0.105)S(0.267)PR 172.69 3.82E-11 12419000 472.58 496.78 391.49 475.11 498.71 539.34 327.54 280.82 605.68 450.71 TRUE FALSE FALSE 417.1848888 512.085203 412.6551336 494.4870394 461.9211569 529.0529881 340.1733275 312.7874137 580.713614 448.0291569 0.931155668 1.142972941 0.921045265 1.103693882 1.031006911 1.180844996 0.759266048 0.698140755 1.296151389 1 8.807448813 -4.623123407 7.438716151 1.001546353 0.71369794 0.480813572 0.127314111 0.101434127 6.432808337 0.012267743 0.04650919 2.38E-05 4.623123407 -0.287848412 LT(ph)PVS(ph)PESSSTEEK ddPTM_HeLa_CUDC101_4h_R1 2 LTPVSPESSSTEEK 14 0 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 2 0 LT(1)PVS(0.98)PES(0.013)S(0.005)S(0.001)TEEK;LT(1)PVS(0.992)PES(0.007)SSTEEK ; 160.8 0.00016546 13774700 7459.4 6483.3 6111.4 6197.5 6241 6004.2 4251.1 3862.7 6908.7 6843.7 TRUE FALSE FALSE 6585.02044 6683.042788 6441.80077 6450.260838 5780.613864 5889.679889 4415.066351 4302.414154 6623.920462 6802.993368 0.967959262 0.982367971 0.946906813 0.948150393 0.849716228 0.865748292 0.648988778 0.632429568 0.973677336 1 12.73195397 -4.622577792 0.6797913 0.985835804 0.464965427 0.938393589 0.03200463 0.288793295 0.122440528 0.005053304 0.10493947 2.38E-05 4.622577792 -0.520870377 TDANESS(ph)SSPEIR ddPTM_HeLa_CUDC101_4h_R1 1 TDANESSSSPEIR 13 0 Q96JM7-2;Q96JM7 Q96JM7-2 L3MBTL3 Lethal(3)malignant brain tumor-like protein 3 1 0 TDANES(0.108)S(0.365)S(0.365)S(0.162)PEIR 150.9 0.00030734 14435000 2190.7 1686.7 1952.2 1564.6 1994.9 1595.3 1607.8 1342.4 2210.8 1992 TRUE FALSE FALSE 1933.909467 1738.665228 2057.741837 1628.411151 1847.740201 1564.87231 1669.813385 1495.21339 2119.669888 1980.151495 0.976647227 0.87804657 1.039184043 0.822366953 0.933130725 0.790279084 0.843275572 0.755100503 1.070458444 1 10.9513951 -4.622065114 0.332335851 1.002270806 0.625849722 0.660095859 0.060303043 2.177158941 0.203732429 0.019418768 0.318407744 2.39E-05 4.622065114 -0.376421083 QDDSPSGASYGQDYDLS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 2 QDDSPSGASYGQDYDLSPSR 20 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 QDDSPSGASYGQDYDLS(0.998)PS(0.002)R;QDDSPSGASYGQDYDLS(0.994)PS(0.005)R ; 262.05 3.76E-71 31342000 5463.2 5714.5 5407.1 5026.4 6784.4 6036.8 3825.2 2734.27 6520.2 6393.8 TRUE FALSE FALSE 4822.811978 5890.556972 5699.424182 5231.398318 6283.928328 5921.658098 3972.739245 3045.528245 6251.434596 6355.769393 0.758808522 0.926804704 0.896732375 0.823094419 0.988696716 0.931698073 0.625060319 0.479175385 0.983584238 1 12.63385106 -4.621646063 3.665318913 0.892736612 0.504686003 0.790657561 0.075284651 0.093974391 2.335537393 0.013382044 0.061448386 2.39E-05 4.621646063 -0.388050608 ITES(ph)EEVVSR ddPTM_HeLa_CUDC101_4h_R1 1 ITESEEVVSR 10 0 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 IT(0.08)ES(0.92)EEVVSR 109.39 0.0086122 4630700 828.27 941.56 725.16 735.07 959.69 966.6 704.77 659.87 718.07 882.06 TRUE FALSE FALSE 731.1814462 970.5683476 764.3643431 765.0493318 888.8955807 948.1637155 731.953215 734.9869335 688.4708507 876.8134679 0.833907636 1.106926824 0.871752512 0.872533737 1.01377957 1.081374489 0.834787833 0.838247769 0.785196482 1 9.776126148 -4.621468486 20.52152397 0.941910139 0.836201833 0.157731135 0.100592905 4.564156835 936.0878503 0.013309644 0.049800308 2.39E-05 4.621468486 -0.105708306 APS(ph)PTAEQPPGGGDSARR ddPTM_HeLa_CUDC101_4h_R1 2 APSPTAEQPPGGGDSARR 18 1 Q15742;Q15742-3;Q15742-2 Q15742 NAB2 NGFI-A-binding protein 2 1 0 APS(0.498)PT(0.406)AEQPPGGGDS(0.096)ARR;APS(0.505)PT(0.14)AEQPPGGGDS(0.355)ARR ; 66.308 0.013794 11198200 2101.43 2524.58 2491.22 2159.48 2837.28 2264.76 2683.04 2610 2473.64 2961.86 TRUE FALSE FALSE 1855.103561 2602.359317 2625.902889 2247.552928 2627.979507 2221.563476 2786.525752 2907.11185 2371.675512 2944.242725 0.630078337 0.883880699 0.891877177 0.76337216 0.892582492 0.754544949 0.946432075 0.98738865 0.805529888 1 11.5236809 -4.620554558 6.238337939 0.827505709 0.977264146 0.259199634 0.095082248 0.282315393 14.7731309 0.01896395 0.073126638 2.40E-05 4.620554558 0.149758437 STSFRGGMGSGGLAT(ph)GIAGGLAGMGGIQNEK ddPTM_HeLa_CUDC101_4h_R1 1 STSFRGGMGSGGLATGIAGGLAGMGGIQNEK 31 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.19)T(0.19)S(0.19)FRGGMGS(0.2)GGLAT(0.23)GIAGGLAGMGGIQNEK 41.734 0.039221 2807600 745.38 625.27 409.31 473.3 669.53 662.57 842.91 862.36 725.07 891.42 TRUE FALSE FALSE 658.0076863 644.5338276 431.4385367 492.6032198 620.1401058 649.9325812 875.4213211 960.5275766 695.1823077 886.1177942 0.742573607 0.727368113 0.486886213 0.555911667 0.699839355 0.733460704 0.987928836 1.083972789 0.784525841 1 9.791354683 -4.619942983 4.47584408 0.793954393 1.063388623 0.356625755 0.146359093 0.239744151 8.1964751 0.027081844 0.113148028 2.40E-05 4.619942983 0.26943423 AAGGS(ph)PAVGCTTR ddPTM_HeLa_CUDC101_4h_R1 1 AAGGSPAVGCTTR 13 0 B5MC79;B5MC16;Q7Z624-2;Q7Z624 B5MC79 CAMKMT Calmodulin-lysine N-methyltransferase 1 0 AAGGS(1)PAVGCTTR 140.33 0.000744 7814700 1496.5 1101.1 1551 1234.4 1418.7 1204.5 1007.7 802.19 1237.9 1153.1 TRUE FALSE FALSE 1321.082539 1135.023586 1634.851752 1284.744168 1314.045327 1181.526169 1046.567327 893.508067 1186.873238 1146.24131 1.152534398 0.990213471 1.426271883 1.120832199 1.146395018 1.030783099 0.913042758 0.779511312 1.03544797 1 10.16269508 -4.618598036 1.862324298 1.102431286 0.771525604 0.475352698 0.117706071 0.334007632 1.88217722 0.017780301 0.150050163 2.41E-05 4.618598036 -0.330905682 RAPS(ph)VANVGSHCDLSLK ddPTM_HeLa_CUDC101_4h_R1 3 RAPSVANVGSHCDLSLK 17 1 P21333-2;P21333;Q60FE5 P21333-2 FLNA Filamin-A 1 0 RAPS(1)VANVGSHCDLSLK;RAPS(0.676)VANVGS(0.324)HCDLSLK;RAPS(0.879)VANVGS(0.12)HCDLSLK ;; 91.14 0.013167 57691000 8943.4 5554.1 5961 6297.9 6536 7584.9 7516.1 7816.9 6725.4 6384 TRUE FALSE FALSE 7895.068209 5725.215238 6283.269691 6554.755584 6053.852302 7440.23067 7805.998495 8706.744299 6448.176165 6346.027684 1.244096087 0.902173064 0.990110665 1.032891111 0.953959327 1.172423292 1.23006058 1.371999104 1.016096444 1 12.6316381 -4.616789585 1.906032527 1.076550996 1.370677791 0.537481377 0.098612097 0.364686702 2.174758429 0.017841448 0.147358406 2.42E-05 4.616789585 0.294126795 DGQS(ph)SPQPSPR ddPTM_HeLa_CUDC101_4h_R1 1 DGQSSPQPSPR 11 0 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 DGQS(0.5)S(0.5)PQPSPR 134.04 0.0017329 54279000 5605.2 3971.4 4270.9 4980.2 5061 4033.3 3407.7 2384.2 4740.8 4375.6 TRUE FALSE FALSE 4948.166953 4093.754127 4501.797773 5183.314082 4687.660113 3956.371522 3539.136131 2655.607691 4545.382217 4349.573737 1.137621122 0.941185131 1.034997461 1.191683231 1.077728623 0.909599828 0.813674246 0.610544355 1.045017855 1 12.08665831 -4.616182865 1.431433422 1.064636755 0.57597879 0.811995939 0.069556107 0.229174595 0.652866405 0.011589757 0.132293607 2.42E-05 4.616182865 -0.488657965 RPS(ph)SPVISK ddPTM_HeLa_CUDC101_4h_R1 1 RPSSPVISK 9 1 Q96T17;Q96T17-2;Q96T17-5;Q96T17-4 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 RPS(0.997)S(0.003)PVISK 112.64 0.018232 250040000 9396.7 8007.1 8851 7794.6 9031.7 7301.7 6907.1 5407 7860.5 7864.2 TRUE FALSE FALSE 8295.23307 8253.78926 9329.511833 8112.497479 8365.449485 7162.432238 7173.509161 6022.511024 7536.486863 7817.423389 1.061121121 1.055819654 1.193425425 1.037745696 1.070103162 0.916213934 0.917630887 0.770395912 0.964062772 1 12.93247746 -4.615516121 1.243572825 1.047070663 0.748529497 0.6763692 0.06190153 0.377243949 0.740617936 0.009171247 0.121888972 2.42E-05 4.615516121 -0.298541166 HLT(ph)PEPDIVASTK ddPTM_HeLa_CUDC101_4h_R1 4 HLTPEPDIVASTK 13 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 HLT(1)PEPDIVASTK;HLT(1)PEPDIVASTK;HLT(1)PEPDIVASTK;HLT(1)PEPDIVASTK ;;; 145.69 0.00075633 152267000 34131.3 29824.2 30037.2 29572.8 30693.5 24201 21987.8 15269.3 31194.2 32525.9 TRUE FALSE FALSE 30130.48075 30743.04825 31661.10189 30778.90661 28429.30166 23739.40625 22835.87681 17007.49539 29908.36187 32332.4345 0.931896445 0.950842358 0.979236559 0.95195141 0.879281195 0.734228851 0.706283865 0.526019635 0.925026597 1 14.98069452 -4.613890053 0.758391168 0.970488388 0.402597962 0.952095477 0.031812493 0.262685443 0.144249125 0.005663836 0.113497707 2.43E-05 4.613890053 -0.567890426 SILKPSTPIPPQEGEEVGES(ph)SEEQDNAPK ddPTM_HeLa_CUDC101_4h_R1 1 SILKPSTPIPPQEGEEVGESSEEQDNAPK 29 1 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;A0A3B3ISZ5;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 SILKPSTPIPPQEGEEVGES(0.5)S(0.5)EEQDNAPK 100.29 3.23E-09 7346500 1829.8 1316.3 1273.8 1630.6 1581.9 1390.3 1768.3 1737.5 1713.5 1609.1 TRUE FALSE FALSE 1615.313618 1356.853643 1342.665481 1697.102916 1465.206389 1363.782344 1836.503923 1935.289977 1642.868805 1599.529002 1.00986829 0.848283239 0.839413027 1.061001654 0.916023646 0.852614953 1.148152938 1.209912402 1.027095353 1 10.64343144 -4.613550074 6.55871434 0.971538492 1.194712303 0.568241859 0.079769397 0.115869531 6.761409458 0.011593487 0.044478277 2.43E-05 4.613550074 0.22317381 S(ph)PMCNQPSINK ddPTM_HeLa_CUDC101_4h_R1 2 SPMCNQPSINK 11 0 Q08499-6;Q08499;Q08499-10;A0A087WSZ7;Q08499-11;Q08499-9;A0A1B0GW84;Q08499-2;Q08499-12;Q08499-7;Q08499-3;A0A1W2PQN6 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 S(1)PMCNQPSINK;S(1)PMCNQPSINK ; 130.15 7.90E-05 9407200 4518.3 4200.1 3843.1 3677.7 4259.8 3997.7 2938.87 2464.75 4052.4 3038.5 TRUE FALSE FALSE 3988.671723 4329.500103 4050.869611 3827.692502 3945.563041 3921.450533 3052.2232 2745.327177 3885.358357 3020.426867 1.320565569 1.433406698 1.341157985 1.267268724 1.306293188 1.298310042 1.010527099 0.908920261 1.286360679 1 11.56053674 -4.611710214 4.819001275 1.214990414 0.931270057 0.480343294 0.120523218 0.187897409 7.330153756 0.023324138 0.095429271 2.45E-05 4.611710214 -0.283720358 SAS(ph)VNKEPVSLPGIMR ddPTM_HeLa_CUDC101_4h_R1 2 SASVNKEPVSLPGIMR 16 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 S(0.001)AS(0.999)VNKEPVSLPGIMR;S(0.001)AS(0.999)VNKEPVSLPGIMR ; 223.06 7.29E-32 344290000 3296.1 2353.1 2132.8 2086.43 2638.1 3242.1 3650 4207.9 2554.4 2573.8 TRUE FALSE FALSE 2909.736155 2425.596222 2248.105619 2171.523634 2443.492619 3180.262344 3790.781723 4686.910327 2449.106551 2558.490923 1.137286096 0.948057388 0.878684227 0.848751744 0.955052291 1.243022719 1.481647517 1.831904223 0.957246527 1 11.3210774 -4.61036807 1.637297592 1.020852373 1.874689161 0.898100739 0.094793521 0.154487137 0.621853399 0.01693429 0.168704484 2.45E-05 4.61036807 0.853836787 EREDS(ph)GDAEAHAFK ddPTM_HeLa_CUDC101_4h_R1 1 EREDSGDAEAHAFK 14 1 Q9NPI1;Q9NPI1-2 Q9NPI1 BRD7 Bromodomain-containing protein 7 1 0 EREDS(1)GDAEAHAFK 67.168 0.029829 14656000 2973.5 3057.2 2774.2 2516 2874.1 2733.7 2926.1 2849.3 2780 2910.2 TRUE FALSE FALSE 2624.950838 3151.388708 2924.181643 2618.613355 2662.083369 2681.559227 3038.960657 3173.652795 2665.407223 2892.890001 0.907380107 1.089356563 1.010816741 0.905189397 0.920215898 0.926948217 1.050492987 1.097052703 0.921364871 1 11.49829575 -4.609069246 4.648015573 0.961140282 1.087109653 0.408656739 0.055767871 0.154365971 5.768739567 0.008394202 0.034836636 2.46E-05 4.609069246 0.125969371 RSNVSSPATPTASSSSSTT(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 2 RSNVSSPATPTASSSSSTTPTR 22 1 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 RSNVSSPATPTASS(0.01)S(0.01)S(0.016)S(0.016)T(0.213)T(0.61)PT(0.126)R;RSNVSSPATPTAS(0.001)S(0.011)S(0.011)S(0.058)S(0.058)T(0.181)T(0.572)PT(0.108)R ; 142.85 2.56E-06 10687100 1517.86 1145.29 1585.24 1350.73 1658.51 1473.88 1533.91 1427.49 1993.52 1597.51 TRUE FALSE FALSE 1339.938752 1180.575027 1670.942869 1405.818608 1536.165022 1445.768195 1593.073423 1589.989691 1911.346262 1588.007939 0.843785927 0.743431439 1.052225765 0.885271775 0.967353489 0.91042882 1.003189835 1.001247948 1.203612535 1 10.63300241 -4.607946901 1.074319172 0.917663536 1.030739956 0 0.121332123 1.947953558 2.58288962 0.01387536 0.216685695 2.47E-05 4.607946901 0.11307642 GVNTGAVGS(ph)YIYDRDPEGK ddPTM_HeLa_CUDC101_4h_R1 1 GVNTGAVGSYIYDRDPEGK 19 1 H0YFA4;P52943;P52943-2;H0YHD8 H0YFA4 CRIP2 Cysteine-rich protein 2 1 0 GVNT(0.002)GAVGS(0.998)YIYDRDPEGK 68.42 0.0025096 0 1690.5 1668.5 1801.8 1431 2012.1 2121.9 2409.4 2666.8 1748.8 2029.8 TRUE FALSE FALSE 1492.342153 1719.904507 1899.210758 1489.362365 1863.671392 2081.428293 2502.331365 2970.377732 1676.713724 2017.726659 0.739615619 0.852397176 0.941262658 0.738138815 0.923649089 1.031570993 1.240173615 1.472140797 0.83099151 1 10.97851503 -4.606952019 1.348217932 0.868000734 1.546741675 0.871537997 0.077893081 0.252209139 0.607927131 0.015705415 0.195827936 2.47E-05 4.606952019 0.678740941 AEGEWEDQEALDY(ph)FSDKES(ph)GKQK ddPTM_HeLa_CUDC101_4h_R1 1 AEGEWEDQEALDYFSDKESGKQK 23 2 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 AEGEWEDQEALDY(0.861)FS(0.534)DKES(0.605)GKQK 44.184 0.038538 8349800 2134.9 2195.3 2135 1743 2246.4 2109.2 2620.3 2775.7 2534.8 2379 TRUE FALSE FALSE 1884.650258 2262.934591 2250.424558 1814.087074 2080.687547 2068.970524 2721.365849 3091.674468 2430.314471 2364.849602 0.796942967 0.956904231 0.95161424 0.767104628 0.87983927 0.874884611 1.150756414 1.30734507 1.027682466 1 11.20753272 -4.603836607 3.094611632 0.895938223 1.28963891 0.732433326 0.080048938 0.100926372 1.828830953 0.012341479 0.065405034 2.49E-05 4.603836607 0.393700688 SVPTAYRVS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SVPTAYRVSR 10 1 Q12872;Q12872-2 Q12872 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 SVPT(0.005)AYRVS(0.995)R 86.262 0.0024778 0 1917.9 1129.3 1081.4 1465.1 1326.9 1407.2 971.98 814.03 1077.2 768.72 TRUE FALSE FALSE 1693.086669 1164.092394 1139.863755 1524.853111 1229.017231 1380.360005 1009.469594 906.6958848 1032.79736 764.1476193 2.215653922 1.523386797 1.491680045 1.995495467 1.608350533 1.806404901 1.32104003 1.186545455 1.351567857 1 9.577707557 -4.602906791 5.89935905 1.620589945 1.218199805 0.182580909 0.318526904 0.33668692 18.56959311 0.062853214 0.245458014 2.50E-05 4.602906791 -0.402390139 S(ph)EALSSVLDQEEAMEIK ddPTM_HeLa_CUDC101_4h_R1 1 SEALSSVLDQEEAMEIK 17 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(1)EALSSVLDQEEAMEIK 212.37 7.20E-24 3100800 731.06 433.84 583.16 515.88 476.65 519.7 211.65 290.73 603.23 702.88 TRUE FALSE FALSE 645.366255 447.2060962 614.6873936 536.9198162 441.4884791 509.7875884 219.8134114 323.825528 578.3646041 698.6992385 0.923668181 0.640055222 0.879759644 0.768456278 0.631871991 0.729623793 0.314603766 0.46346913 0.827773343 1 9.448527758 -4.602642927 0.294998379 1.010027287 2.90E-15 0.655243779 0.117977938 2.077136896 0.156706584 0.050542323 0.738319656 2.50E-05 4.602642927 -1.010027287 T(ph)PPAPSPFDLPELK ddPTM_HeLa_CUDC101_4h_R1 3 TPPAPSPFDLPELK 14 0 O95239 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 T(1)PPAPSPFDLPELK;T(1)PPAPSPFDLPELK;T(1)PPAPSPFDLPELK ;; 134.4 0.0033731 56101500 7132.1 7087.6 6034.4 5624.3 6104.5 5852.3 4672 2429.38 7556.9 7021.4 TRUE FALSE FALSE 6296.08605 7305.960555 6360.637917 5853.683264 5654.183197 5740.677128 4852.200605 2705.930799 7245.401383 6979.636401 0.902065049 1.046753747 0.911313649 0.838680259 0.810097099 0.822489425 0.695193894 0.387689364 1.038077196 1 12.76893617 -4.062256781 0.648684865 0.956052633 3.72E-24 0.883136471 0.063312216 0.94324449 0.229220785 0.010978263 0.706188046 8.66E-05 4.062256781 -0.956052633 down KSFSKEELMS(ph)SDLEETAGSTSIPK ddPTM_HeLa_CUDC101_4h_R1 1 KSFSKEELMSSDLEETAGSTSIPK 24 2 O00567 O00567 NOP56 Nucleolar protein 56 1 0 KS(0.005)FS(0.004)KEELMS(0.666)S(0.136)DLEET(0.04)AGS(0.047)T(0.047)S(0.056)IPK 50.426 0.031293 32616000 2123.8 1914.8 2349.6 2015.8 2565.3 2439.4 2539 2549 1926.6 2245.9 TRUE FALSE FALSE 1874.851383 1973.792718 2476.626483 2098.013037 2376.06293 2392.872509 2636.930081 2839.167857 1847.184733 2232.541287 0.839783521 0.884101329 1.109330653 0.9397421 1.064286221 1.071815569 1.181133848 1.271720202 0.827391074 1 11.12447114 -4.601398712 0.603912846 0.926251411 1.409564423 0.720593673 0.074158565 1.101144587 0.348282076 0.015256219 0.339893903 2.50E-05 4.601398712 0.483313012 AGAASPLNSPLSSAVPSLGKEPFPPSS(ph)PLQK ddPTM_HeLa_CUDC101_4h_R1 1 AGAASPLNSPLSSAVPSLGKEPFPPSSPLQK 31 1 E7EPJ7;O75962-5;O75962-4;O75962 E7EPJ7 TRIO Triple functional domain protein 1 0 AGAASPLNSPLSSAVPS(0.003)LGKEPFPPS(0.281)S(0.717)PLQK 85.871 1.74E-07 22787000 3369.3 2870 2867 3233.4 3734.4 3926.5 4216.7 4143.3 2937.7 2790.9 TRUE FALSE FALSE 2974.355762 2958.421298 3021.998692 3365.272028 3458.920752 3851.608554 4379.339531 4614.956524 2816.606763 2774.299603 1.07211051 1.066366911 1.089283468 1.213016801 1.246772608 1.388317452 1.578538788 1.663467248 1.015249672 1 11.43790788 -4.601311064 0.510272245 1.023173609 2.012366521 0.988795081 0.023797489 0.229968813 0.049885758 0.005702999 0.126751799 2.50E-05 4.601311064 0.989192912 DLQS(ph)PDFTTGFHSDKIEAK ddPTM_HeLa_CUDC101_4h_R1 1 DLQSPDFTTGFHSDKIEAK 19 1 E9PDR5;E7EPI0;Q9P2D0-2;Q9P2D0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 0 DLQS(1)PDFTTGFHSDKIEAK 112.58 0.00010995 83452000 3980.7 3543.5 3335.5 3514.2 3776.5 3426.4 3117 2772.4 3767.9 3238.8 TRUE FALSE FALSE 3514.08838 3652.671035 3515.827219 3657.524266 3497.915119 3361.047129 3237.223734 3087.99881 3612.585567 3219.535474 1.091489257 1.134533558 1.092029347 1.13604099 1.08646578 1.04395406 1.005494041 0.95914421 1.122082858 1 11.65263683 -4.601285513 2.094638314 1.064458612 0.959028899 0.428801144 0.044329066 0.397386589 2.955104557 0.00784482 0.060607491 2.50E-05 4.601285513 -0.105429713 RGLLYDS(ph)DEEDEERPARK ddPTM_HeLa_CUDC101_4h_R1 1 RGLLYDSDEEDEERPARK 18 3 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RGLLYDS(1)DEEDEERPARK 57.806 0.030938 71518000 1693.2 1785.9 1577.6 1580.4 2148.7 1914 2082.4 2025.5 2198.6 1580.2 TRUE FALSE FALSE 1494.725663 1840.921462 1662.889828 1644.855543 1990.194682 1877.493639 2162.718866 2256.074733 2107.972777 1570.8009 0.951569141 1.17196359 1.058625462 1.047144513 1.266993596 1.195246093 1.376825583 1.436257601 1.341973243 1 10.61728461 -4.600461903 0.428512975 0.973946936 1.697209657 0.314676415 0.132261805 1.004803924 0.150984847 0.016854021 0.350467463 2.51E-05 4.600461903 0.723262721 SDLDYIRS(ph)PLPFQNR ddPTM_HeLa_CUDC101_4h_R1 2 SDLDYIRSPLPFQNR 15 1 H7BYL6;A0A0A0MRF6;Q99996-5;Q99996-3;Q99996;Q99996-1;Q99996-6 H7BYL6 AKAP9 A-kinase anchor protein 9 1 0 SDLDYIRS(1)PLPFQNR;SDLDYIRS(1)PLPFQNR ; 71.685 0.020332 33346000 5121.9 4231.9 4409.1 4565 5002.3 4664.5 3648.1 2924.8 4003.4 4838 TRUE FALSE FALSE 4521.518646 4362.279823 4647.469283 4751.180432 4633.290295 4575.532434 3788.808439 3257.74741 3838.378158 4809.223361 0.940176471 0.90706534 0.966365863 0.987930914 0.963417572 0.951407762 0.787821267 0.677395738 0.798128486 1 12.23158822 -4.598952659 2.272598831 0.966914468 0.674801528 0.662793871 0.058916388 0.073049914 0.660421924 0.004484935 0.031937329 2.52E-05 4.598952659 -0.29211294 NVSS(ph)FPDDATSPLQENR ddPTM_HeLa_CUDC101_4h_R1 3 NVSSFPDDATSPLQENR 17 0 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 NVS(0.038)S(0.962)FPDDATSPLQENR;NVS(0.003)S(0.997)FPDDATSPLQENR;NVS(0.075)S(0.916)FPDDAT(0.008)SPLQENR ;; 236.27 1.58E-43 26871700 5509.7 5475.2 4842 4914.7 5715.8 5200.2 4213.1 3547.48 5104.5 4980.4 TRUE FALSE FALSE 4863.861318 5643.884422 5103.773166 5115.142709 5294.156821 5101.014849 4375.600678 3951.310784 4894.090349 4950.776359 0.982444159 1.139999873 1.030903599 1.033200116 1.069358912 1.030346451 0.883821114 0.798119426 0.988550077 1 12.27343906 -4.59648063 3.278799729 1.015542306 0.80936107 0.733971113 0.046675745 0.108241449 2.217773571 0.00732926 0.037630243 2.53E-05 4.59648063 -0.206181236 HKHT(ph)PVYHPRVY(ph)T(ph)GK ddPTM_HeLa_CUDC101_4h_R1 1 HKHTPVYHPRVYTGK 15 2 F5H435;Q3SY52-3;Q3SY52-2;Q3SY52 F5H435 ZIK1 Zinc finger protein interacting with ribonucleoprotein K 3 0 HKHT(1)PVY(0.39)HPRVY(0.821)T(0.789)GK 51.643 0.0031772 0 655.89 715.02 536 666.72 573.07 666.61 461.05 354.56 574.38 640.88 TRUE FALSE FALSE 579.0075685 737.0489187 564.9777813 693.9117234 530.7957678 653.8955249 478.8328529 394.9216772 550.7038133 637.0680173 0.90886303 1.156939132 0.886840598 1.08922706 0.833185395 1.026413989 0.75161967 0.619905044 0.864434877 1 9.315303601 -4.596140265 3.636467921 0.969655104 0.639822681 0.588659934 0.097766001 0.098967747 2.49898397 0.011867524 0.056663687 2.53E-05 4.596140265 -0.329832424 SSFLSS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 SSFLSSPER 9 0 Q4AC94 Q4AC94 C2CD3 C2 domain-containing protein 3 1 0 SSFLS(0.076)S(0.924)PER;SSFLS(0.073)S(0.927)PER ; 133.99 0.0026691 23982000 10392.5 6297.3 4800.8 7548.3 6844 6792.4 6003.5 5389.9 4210.1 4495.3 TRUE FALSE FALSE 9174.306904 6491.312349 5060.34577 7856.152301 6339.131755 6662.846287 6235.057006 6003.464429 4036.557896 4468.561756 2.05307824 1.452662558 1.132432771 1.758094154 1.418606724 1.491049392 1.395316289 1.343489194 0.903323735 1 12.12559485 -4.596046736 2.061413124 1.491570559 1.337408048 0 0.333174724 2.048171546 14.58344816 0.05719525 0.455402059 2.53E-05 4.596046736 -0.154162511 GSFS(ph)DTGLGDGK ddPTM_HeLa_CUDC101_4h_R1 2 GSFSDTGLGDGK 12 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 GS(0.004)FS(0.912)DT(0.084)GLGDGK;GS(0.001)FS(0.959)DT(0.04)GLGDGK ; 165.51 4.33E-05 150769000 6473.6 6301.6 5807 5776.1 6204.1 6789.8 7444.1 7835.4 5800.9 7238.9 TRUE FALSE FALSE 5714.774421 6495.744827 6120.943985 6011.674324 5746.435903 6660.295878 7731.221431 8727.350264 5561.784447 7195.842701 0.79417723 0.902708007 0.850622261 0.835437151 0.798577198 0.925575524 1.074401116 1.212832274 0.772916346 1 12.81294793 -4.594988934 2.289339665 0.884789776 1.211158469 0.744478677 0.067891413 0.173981645 1.596403616 0.01198565 0.085481983 2.54E-05 4.594988934 0.326368693 FARS(ph)DDEQSSADKER ddPTM_HeLa_CUDC101_4h_R1 2 FARSDDEQSSADKER 15 2 A6NGV6;P27540-3;P27540-4;P27540 A6NGV6 ARNT Aryl hydrocarbon receptor nuclear translocator 1 0 FARS(1)DDEQSSADKER;FARS(1)DDEQSSADKER ; 131.08 0.00054705 101219000 3506.7 3032.4 3431.5 3140 3370 2907.5 4687.6 5337.4 3138.5 3209.5 TRUE FALSE FALSE 3095.649942 3125.82465 3617.01727 3268.062772 3121.401814 2852.044282 4868.402302 5944.988041 3009.129702 3190.409751 0.970298546 0.979756487 1.133715589 1.024339513 0.978370196 0.893942943 1.525948916 1.863393264 0.943179697 1 11.63952601 -4.594872281 3.445185861 0.993132307 1.81603878 0.949789707 0.06663768 0.032746254 0.743487765 0.009297459 0.046160108 2.54E-05 4.594872281 0.822906473 GVS(ph)MPNMLEPK ddPTM_HeLa_CUDC101_4h_R1 3 GVSMPNMLEPK 11 0 O14639-3;O14639-5;J3QSX6;O14639-4;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 1 0 GVS(1)MPNMLEPK;GVS(1)MPNMLEPK;GVS(1)MPNMLEPK ;; 142.39 0.001285 160427000 11684.6 9214.6 9818.2 9859.4 10726.4 9462.6 8869.1 7682.2 9261.2 9162.3 TRUE FALSE FALSE 10314.9489 9498.490904 10349.00159 10261.50895 9935.134842 9282.116671 9211.184158 8556.710595 8879.449416 9107.802232 1.132539842 1.042896043 1.13627869 1.12667235 1.090837788 1.019139023 1.011350919 0.939492358 0.974927781 1 13.15288725 -4.593987847 1.49748138 1.073995653 0.93328649 0.370397935 0.05297934 0.566822654 1.778479557 0.008519666 0.097868518 2.55E-05 4.593987847 -0.140709163 QASTDAGTAGALT(ph)PQHVR ddPTM_HeLa_CUDC101_4h_R1 2 QASTDAGTAGALTPQHVR 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 QASTDAGTAGALT(1)PQHVR;QASTDAGTAGALT(1)PQHVR ; 195.94 1.64E-16 54704000 6573.4 5149.5 4967.3 4644.4 5041.5 4874 3904.4 1898.77 5643.1 6122.2 TRUE FALSE FALSE 5802.876017 5308.149991 5235.847263 4833.818707 4669.598589 4781.036571 4054.994016 2114.918302 5410.489029 6085.784882 0.953513167 0.872221101 0.860340509 0.794280245 0.767296032 0.785607225 0.666305841 0.347517755 0.88903718 1 12.57122762 -4.060623445 0.387607458 0.986819849 8.36E-17 0.846680133 0.068255959 1.468982181 0.134713166 0.017361942 0.693771105 8.70E-05 4.060623445 -0.986819849 down MGAS(ph)S(ph)S(ph)S(ph)ALARLGLPAR ddPTM_HeLa_CUDC101_4h_R1 1 MGASSSSALARLGLPAR 17 1 F6V6Z1;Q969Z3-2;Q969Z3 F6V6Z1 2-Mar Mitochondrial amidoxime reducing component 2 4 0 MGAS(1)S(1)S(1)S(1)ALARLGLPAR 52.42 0.039346 6348400000 5136.7 4806.3 4829.4 5012.3 5145.9 4963.6 5091.5 4878.2 4935.3 5543.7 TRUE FALSE FALSE 4534.583813 4954.376406 5090.491972 5216.723259 4766.297209 4868.9276 5287.880861 5433.51457 4731.864845 5510.725826 0.822865074 0.899042442 0.923742558 0.94664903 0.864912783 0.883536535 0.959561595 0.985988914 0.858664538 1 12.42802664 -4.593368368 5.352872037 0.91078791 0.980080113 0.254893259 0.047859953 0.286466647 14.70107696 0.009281415 0.037208874 2.55E-05 4.593368368 0.069292204 GSALDDAVNPLHENGDDS(ph)LSPR ddPTM_HeLa_CUDC101_4h_R1 1 GSALDDAVNPLHENGDDSLSPR 22 0 Q9BVI0 Q9BVI0 PHF20 PHD finger protein 20 1 0 GSALDDAVNPLHENGDDS(0.774)LS(0.226)PR 91.655 0.00025048 4329600 1109.2 1113.4 853.6 618.77 1366.7 1227.7 778.25 632.12 974.79 1111.4 TRUE FALSE FALSE 979.1812574 1147.702534 899.748198 644.0061152 1265.881264 1204.283668 808.2673632 704.0779857 934.6087436 1104.789343 0.886305849 1.038842872 0.814407021 0.582922092 1.145812341 1.090057281 0.73160315 0.637296141 0.845961042 1 10.10955559 -4.592669502 6.596894849 0.938190518 0.659830802 0.290196929 0.152820533 0.161268291 11.79163689 0.020860937 0.080313599 2.55E-05 4.592669502 -0.278359717 AGDPGEMPQS(ph)PTGLGQPK ddPTM_HeLa_CUDC101_4h_R1 3 AGDPGEMPQSPTGLGQPK 18 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9;H0YHL2 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 AGDPGEMPQS(0.984)PT(0.016)GLGQPK;AGDPGEMPQS(0.951)PT(0.049)GLGQPK;AGDPGEMPQS(0.919)PT(0.081)GLGQPK ;; 157 3.76E-05 37028800 6997.1 6683.1 6601.7 6561 7338.2 5929.5 5017.2 3698.1 7445.6 6672.2 TRUE FALSE FALSE 6176.910545 6888.99839 6958.607871 6828.585939 6796.875606 5816.404667 5210.715085 4119.076756 7138.689217 6632.513458 0.931307653 1.03867085 1.049166039 1.029562319 1.024781276 0.876953315 0.785632041 0.621043106 1.076317336 1 12.69533998 -4.592238398 1.544122403 0.986335766 0.59430445 0.868831928 0.049730552 0.168357581 0.571466557 0.007401549 0.082523286 2.56E-05 4.592238398 -0.392031316 FMSS(ph)PVLSDLPR ddPTM_HeLa_CUDC101_4h_R1 2 FMSSPVLSDLPR 12 0 E9PJV4;E9PLJ6;E9PL62;E9PP25;E9PS02;E9PP62;E9PIU0;Q6MZQ0-4;Q6MZQ0 E9PJV4 PRR5L Proline-rich protein 5-like 1 0 FMS(0.301)S(0.698)PVLSDLPR;FMS(0.015)S(0.984)PVLS(0.001)DLPR ; 107.09 0.0064839 7784800 2345.4 1860.77 1653.59 1637.77 2173.64 2075.94 2112.83 2171.8 1927.78 1718.9 TRUE FALSE FALSE 2070.475767 1918.098118 1742.988077 1704.56534 2013.294908 2036.344903 2194.322561 2419.028933 1848.316092 1708.675906 1.211742824 1.122564034 1.020081146 0.997594297 1.178277812 1.191767787 1.284223973 1.415733039 1.081724209 1 10.73866306 -4.591366339 1.136209824 1.092766507 1.470717854 0.732457818 0.066038576 0.54798734 0.828247731 0.013824539 0.213180042 2.56E-05 4.591366339 0.377951346 SDS(ph)ASSEPVGIYQGFEK ddPTM_HeLa_CUDC101_4h_R1 1 SDSASSEPVGIYQGFEK 17 0 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 0 S(0.273)DS(0.4)AS(0.11)S(0.217)EPVGIYQGFEK 134.88 0.00023347 5824800 1517.9 1258.7 1353.9 1432.9 1403.8 1456.7 1422.9 1390 1386.3 1466.3 TRUE FALSE FALSE 1339.974063 1297.479055 1427.095929 1491.339856 1300.244471 1428.915875 1477.78173 1548.231981 1329.156127 1457.578382 0.919315269 0.890160742 0.97908692 1.023162715 0.89205801 0.980335529 1.013860899 1.062194665 0.911893414 1 10.50935775 -4.591266754 2.183139019 0.957153525 1.061415927 0.412825191 0.043788926 0.325286751 2.655029568 0.006642664 0.050264568 2.56E-05 4.591266754 0.104262402 SLSMDS(ph)QVPVYSPSIDLK ddPTM_HeLa_CUDC101_4h_R1 1 SLSMDSQVPVYSPSIDLK 18 0 Q9ULJ3-2;Q9ULJ3 Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 S(0.007)LS(0.388)MDS(0.605)QVPVYSPSIDLK 170.48 2.95E-07 15714000 2974.9 2144.1 1752.7 2074 2365.9 2343.7 2816.2 2879.3 2773.5 2676.4 TRUE FALSE FALSE 2626.186732 2210.15718 1847.456264 2158.586685 2191.372271 2298.997827 2924.821777 3207.067873 2659.175156 2660.480654 0.987109877 0.830736046 0.694406953 0.811352145 0.823675326 0.864128752 1.099358408 1.205446794 0.9995093 1 11.3774712 -4.590370967 4.359421119 0.928876235 1.184879191 0.491414496 0.103983367 0.16632101 6.032930507 0.01801976 0.07819441 2.57E-05 4.590370967 0.256002956 ELDEEGS(ph)DPPLPGR ddPTM_HeLa_CUDC101_4h_R1 4 ELDEEGSDPPLPGR 14 0 H7C0T1;H7C2R9;C9JQV0;Q9BRJ6 H7C0T1 C7orf50 Uncharacterized protein C7orf50 1 0 ELDEEGS(1)DPPLPGR;ELDEEGS(1)DPPLPGR;ELDEEGS(1)DPPLPGR;ELDEEGS(1)DPPLPGR ;;; 147.7 0.00030139 184657000 14635.1 14378.9 14726.1 12652.5 16343.6 14404 15256.4 14843.1 15362.8 16576.1 TRUE FALSE FALSE 12919.59576 14821.89687 15522.23751 13168.52364 15137.96519 14129.2677 15844.84446 16532.77851 14729.53888 16477.50462 0.784074777 0.89952315 0.942025984 0.799181911 0.918704958 0.857488317 0.961604613 1.003354506 0.893918055 1 14.00821015 -4.589123819 4.779981971 0.891599586 0.994726858 0.293441035 0.060428919 0.250190093 10.83999959 0.011599357 0.048424565 2.58E-05 4.589123819 0.103127272 LMS(ph)DVEDVSLENVHTR ddPTM_HeLa_CUDC101_4h_R1 2 LMSDVEDVSLENVHTR 16 0 Q9NSI6-3;Q9NSI6-2;Q9NSI6 Q9NSI6-3 BRWD1 Bromodomain and WD repeat-containing protein 1 1 0 LMS(1)DVEDVSLENVHTR;LMS(1)DVEDVSLENVHTR ; 181.32 8.30E-11 6940500 4642.3 3136.6 3346.7 2897.3 3793.1 3521.8 4028.6 4107.9 3652.9 3373 TRUE FALSE FALSE 4098.136631 3233.234928 3527.632725 3015.464417 3513.29057 3454.627533 4183.984451 4575.526731 3502.325916 3352.937246 1.222252709 0.964299267 1.052102222 0.899350091 1.047824732 1.030328718 1.247856475 1.364632379 1.044554568 1 11.71120977 -4.588247898 3.584037351 1.070579041 1.34728537 0.609574308 0.085411285 0.155345942 3.854465286 0.015379131 0.075102879 2.58E-05 4.588247898 0.276706329 TYS(ph)DEANQMR ddPTM_HeLa_CUDC101_4h_R1 2 TYSDEANQMR 10 0 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5;Q9BXF6 RAB11FIP5 Rab11 family-interacting protein 5 1 0 T(0.013)YS(0.987)DEANQMR;T(0.226)YS(0.774)DEANQMR ; 174.23 2.18E-07 149189000 4694.1 4015.4 3235.5 3905.1 4071.2 3982.5 4166.7 4134.4 4057.1 3807 TRUE FALSE FALSE 4143.864714 4139.109715 3410.420917 4064.366857 3770.875687 3906.540448 4327.411015 4605.043384 3889.864621 3784.355795 1.09499871 1.093742222 0.901189291 1.073991738 0.996437939 1.032286777 1.143500043 1.216863222 1.027880261 1 11.88583202 -4.588203914 2.933788348 1.036786571 1.210216563 0.566611912 0.054589837 0.16437247 2.659230899 0.008219921 0.046919755 2.58E-05 4.588203914 0.173429992 LPSTSDDCPAIGT(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 3 LPSTSDDCPAIGTPLR 16 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 LPSTSDDCPAIGT(1)PLR;LPSTSDDCPAIGT(1)PLR;LPSTSDDCPAIGT(1)PLR ;; 191.44 9.70E-11 64344000 1660.77 1178.59 1074.7 1339.84 1164.3 1200.92 1421.07 1416.72 1464.99 1226.42 TRUE FALSE FALSE 1466.097058 1214.900961 1132.801533 1394.484466 1078.411909 1178.014452 1475.881146 1577.993678 1404.602492 1219.125199 1.202581211 0.996535025 0.929192124 1.143840245 0.884578474 0.966278486 1.210606709 1.294365566 1.15213966 1 10.25163058 -4.587218409 5.631913861 1.060260021 1.275416596 0.422346527 0.100401945 0.154742595 9.187689647 0.015967705 0.063430024 2.59E-05 4.587218409 0.215156575 QYT(ph)SPEEIDAQLQAEK ddPTM_HeLa_CUDC101_4h_R1 1 QYTSPEEIDAQLQAEK 16 0 Q13442;F8WBW6 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 1 0 QY(0.001)T(0.511)S(0.488)PEEIDAQLQAEK 97.69 0.0073349 4729200 2150.9 2207.7 1925.4 2289.2 2319.5 1974.9 1756.1 1391.9 2491 2283.2 TRUE FALSE FALSE 1898.774763 2275.71662 2029.492948 2382.563471 2148.395106 1937.232073 1823.833365 1550.34827 2388.319926 2269.619425 0.836604913 1.00268644 0.894199673 1.049763429 0.946588262 0.853549301 0.803585546 0.683087329 1.052299738 1 11.14823469 -4.586967567 1.511002749 0.935566657 0.664992524 0.620446661 0.07008127 0.375178771 1.196677614 0.010852007 0.125684469 2.59E-05 4.586967567 -0.270574133 S(ph)LPHLPGTPRPTSSLPPGSVK ddPTM_HeLa_CUDC101_4h_R1 1 SLPHLPGTPRPTSSLPPGSVK 21 1 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 S(1)LPHLPGTPRPTSSLPPGSVK 67.217 0.0017704 0 785.93 606.47 455.15 677.2 722.68 737.52 740.59 772.68 418.77 579.69 TRUE FALSE FALSE 693.8044768 625.1546219 479.7567858 704.8191431 669.3693362 723.4530348 769.1548044 860.6387679 401.5081234 576.2419781 1.204015853 1.084882125 0.832561327 1.223130507 1.161611548 1.255467429 1.334777461 1.493537091 0.69677 1 9.170530952 -4.586449385 0.827728482 1.082453026 1.605893216 0.497196847 0.158566327 0.881902217 0.588125474 0.018821273 0.378452251 2.59E-05 4.586449385 0.52344019 ILS(ph)DVTHSAVFGVPASK ddPTM_HeLa_CUDC101_4h_R1 2 ILSDVTHSAVFGVPASK 17 0 Q2M2I8-2;Q2M2I8;E9PG46 Q2M2I8-2 AAK1 AP2-associated protein kinase 1 1 0 ILS(0.765)DVT(0.232)HS(0.003)AVFGVPASK;ILS(0.775)DVT(0.225)HSAVFGVPASK ; 115.74 0.00035517 453360000 18203 13778.6 12346.4 13938.3 16341.4 16737 16706.3 17140.3 14953.6 15618.9 TRUE FALSE FALSE 16069.27193 14203.10233 13013.88373 14506.76412 15135.92748 16417.76961 17350.66759 19091.48247 14337.20628 15525.99809 1.034991235 0.914794801 0.838199493 0.934353079 0.974876294 1.057437307 1.117523491 1.229646066 0.923432181 1 13.92239839 -4.586023075 1.564329311 0.987080936 1.246460924 0.668560362 0.06180525 0.353541236 1.233749267 0.010379629 0.115902256 2.59E-05 4.586023075 0.259379989 AGS(ph)EECVFYTDETASPLAPDLAK ddPTM_HeLa_CUDC101_4h_R1 2 AGSEECVFYTDETASPLAPDLAK 23 0 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 AGS(1)EECVFYTDETASPLAPDLAK;AGS(1)EECVFYTDETASPLAPDLAK ; 249.83 4.56E-59 25221000 16484.2 14266.7 13367.3 12675.5 14017.9 13905.5 12329.8 11129.9 14350.2 12173 TRUE FALSE FALSE 14551.94706 14706.24012 14089.97667 13192.46168 12983.82744 13640.27576 12805.36452 12396.88283 13758.67868 12100.59445 1.202581172 1.215332038 1.164403677 1.090232528 1.072990876 1.127240137 1.058242598 1.024485439 1.137025023 1 13.5627903 -4.585469237 3.752541459 1.110682294 1.029693877 0.211570312 0.061196655 0.400304035 10.97017932 0.012115652 0.057642307 2.60E-05 4.585469237 -0.080988416 DPQRS(ph)PLLEVK ddPTM_HeLa_CUDC101_4h_R1 3 DPQRSPLLEVK 11 1 A0A140T9E6;A2AB20;Q9BW19 A0A140T9E6 KIFC1 Kinesin-like protein KIFC1 1 0 DPQRS(1)PLLEVK;DPQRS(1)PLLEVK;DPQRS(1)PLLEVK ;; 124.23 0.01663 52611000 5319.2 4517.11 4802 4663.6 4844.5 4607.9 4886.2 4695.68 5116.3 4887.3 TRUE FALSE FALSE 4695.691439 4656.276805 5061.610645 4853.801766 4487.130887 4520.011985 5074.662371 5230.217231 4905.403948 4858.230122 0.966543643 0.958430681 1.04186309 0.999088484 0.923614315 0.930382438 1.044549608 1.076568441 1.009710085 1 12.24621511 -4.585268363 6.725235242 0.980078262 1.068942634 0.484969976 0.034403495 0.115934242 9.68539669 0.004841378 0.018635719 2.60E-05 4.585268363 0.088864372 GALQNIIPAST(ph)GAAK ddPTM_HeLa_CUDC101_4h_R1 1 GALQNIIPASTGAAK 15 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 GALQNIIPAS(0.058)T(0.942)GAAK 127.18 0.0036358 260640000 3692.1 3363.1 3302.7 3050.6 3424.2 3502.9 3284.9 3350.1 2923.2 3583.9 TRUE FALSE FALSE 3259.317635 3466.713125 3481.253952 3175.016654 3171.603588 3436.088019 3411.599693 3731.461842 2802.704459 3562.582803 0.914874914 0.973089838 0.977171379 0.89121203 0.890253999 0.964493517 0.957619761 1.047403541 0.786705773 1 11.79870783 -4.58507639 0.003335083 1.891485099 2.39E-07 0 0.073887282 173435.2712 101.7414185 28239.12339 29473.04299 2.60E-05 4.58507639 -1.891484861 RIS(ph)EMEEELK ddPTM_HeLa_CUDC101_4h_R1 2 RISEMEEELK 10 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 RIS(1)EMEEELK;RIS(1)EMEEELK ; 147.73 0.00034112 18547600 8841.7 7867.7 5938.9 6729.2 8356.5 9560.7 10384.2 11820 7432.9 8185.6 TRUE FALSE FALSE 7805.289329 8110.094511 6259.974898 7003.645862 7740.057643 9378.345577 10784.72207 13165.54102 7126.512716 8136.911687 0.95924469 0.996704256 0.769330569 0.860725313 0.951227928 1.15256819 1.325407291 1.618002201 0.87582525 1 12.99026562 -4.584946952 1.418485614 0.954387514 1.686929878 0.895681421 0.077600711 0.174032146 0.469104935 0.012183444 0.152109973 2.60E-05 4.584946952 0.732542364 NQIPRT(ph)PENLITEIR ddPTM_HeLa_CUDC101_4h_R1 1 NQIPRTPENLITEIR 15 1 Q7Z4H7-3;Q7Z4H7;Q5VY60;Q5SYF9 Q7Z4H7-3 HAUS6 HAUS augmin-like complex subunit 6 1 0 NQIPRT(1)PENLITEIR 74.133 0.036921 15274000 2278.3 2467.9 2183.7 2469.3 2995.8 2208.8 1892.8 1485.8 2238.7 2406.1 TRUE FALSE FALSE 2011.241128 2543.933074 2301.757427 2570.008727 2774.805802 2166.67082 1965.80593 1654.937466 2146.419838 2391.78841 0.840894253 1.063611255 0.9623583 1.074513413 1.160138493 0.905878969 0.821897924 0.691924695 0.897412091 1 11.22387405 -4.583808792 2.373575449 0.963179915 0.698908872 0.517310668 0.091694729 0.265505225 2.63544989 0.015317445 0.108012484 2.61E-05 4.583808792 -0.264271043 QPS(ph)PIVPALQNK ddPTM_HeLa_CUDC101_4h_R1 1 QPSPIVPALQNK 12 0 Q1MSJ5-2;Q1MSJ5-1;Q1MSJ5 Q1MSJ5-2 CSPP1 Centrosome and spindle pole-associated protein 1 1 0 QPS(1)PIVPALQNK 94.122 0.0022863 0 598.53 620.75 492.52 614.13 528.02 669.16 474.21 439.94 365.68 552.87 TRUE FALSE FALSE 528.3712207 639.8745717 519.147121 639.1768759 489.0690166 656.3968879 492.5004385 490.0209913 350.6065156 549.5815047 0.961406482 1.164294224 0.94462262 1.163024721 0.889893514 1.194357675 0.896137214 0.891625695 0.63795181 1 9.102189643 -4.583744897 24.99999468 1.010797041 0.892732899 0.055088048 0.155240675 71.04108309 29178.77886 0.012687155 0.047471002 2.61E-05 4.583744897 -0.118064142 LVGATATSS(ph)PPPK ddPTM_HeLa_CUDC101_4h_R1 2 LVGATATSSPPPK 13 0 H9KVD1;Q96QD9-4;Q96QD9 H9KVD1 FYTTD1 UAP56-interacting factor 1 0 LVGATAT(0.007)S(0.043)S(0.949)PPPK;LVGATAT(0.006)S(0.074)S(0.919)PPPK ; 133.32 0.00098513 65543000 10591.4 10702.3 10399 9749.9 11337.6 10496.4 7752 6191.7 9604.8 9364.5 TRUE FALSE FALSE 9349.892148 11032.02518 10961.2014 10147.54306 10501.24784 10296.19866 8050.997237 6896.5381 9208.886079 9308.799538 1.004414383 1.185117923 1.177509662 1.090102222 1.128099041 1.106071585 0.864880289 0.740862242 0.989266773 1 13.18437941 -4.582386636 3.936677573 1.048328636 0.761835691 0.687613574 0.074757632 0.113168989 3.449382449 0.0126661 0.058768288 2.62E-05 4.582386636 -0.286492945 S(ph)QEDLNEPIKR ddPTM_HeLa_CUDC101_4h_R1 2 SQEDLNEPIKR 11 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 S(1)QEDLNEPIKR;S(1)QEDLNEPIKR ; 85.163 0.016894 192748000 7084.1 5828.7 5247.6 5571.8 5524.8 5126.2 6280.6 6225.6 6071.2 5376.4 TRUE FALSE FALSE 6253.712537 6008.275338 5531.301129 5799.042087 5117.246511 5028.426276 6522.844846 6934.297139 5820.942566 5344.420934 1.17013847 1.124214468 1.034967342 1.085064623 0.957493164 0.94087392 1.220496089 1.297483343 1.089162444 1 12.38381793 -4.582125912 7.059380116 1.066050583 1.279010955 0.592707922 0.069496438 0.122052782 11.65002018 0.011972462 0.045863438 2.62E-05 4.582125912 0.212960372 S(ph)LESLR ddPTM_HeLa_CUDC101_4h_R1 2 SLESLR 6 0 Q5VT97-2;Q5VT97 Q5VT97-2 SYDE2 Rho GTPase-activating protein SYDE2 1 0 S(1)LESLR;S(1)LESLR ; 126.28 0.00028874 4528200 2471.2 2518.2 2343 2531.7 2983.5 2591.8 2103.76 1791.87 2407.5 2591.9 TRUE FALSE FALSE 2181.529682 2595.782757 2469.669667 2634.953669 2763.413149 2542.365733 2184.902728 1995.849238 2308.261831 2576.483264 0.846708268 1.007490634 0.958542872 1.022693881 1.072552338 0.986758101 0.848017435 0.77464087 0.895896303 1 11.33118751 -4.581061496 3.986013728 0.954210616 0.787348523 0.508201727 0.063321172 0.169890266 5.334615988 0.011201922 0.051696768 2.62E-05 4.581061496 -0.166862093 SPPAS(ph)PESWK ddPTM_HeLa_CUDC101_4h_R1 3 SPPASPESWK 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 S(0.011)PPAS(0.827)PES(0.161)WK;S(0.001)PPAS(0.995)PES(0.004)WK;S(0.196)PPAS(0.796)PES(0.008)WK ;; 103.43 0.012531 120251000 8540.8 8000.8 7091 7617.5 9725.8 8773.4 11630.1 11866.9 7789.4 7747.5 TRUE FALSE FALSE 7539.660371 8247.295165 7474.360909 7928.174576 9008.347111 8606.062012 12078.67685 13217.77993 7468.317635 7701.417525 0.978996444 1.070880151 0.970517555 1.029443547 1.169699874 1.117464672 1.568370604 1.716278839 0.969732859 1 12.9109083 -4.580735655 1.071949842 0.997837695 1.920136638 0.941712172 0.060769265 0.151330274 0.194398572 0.008299016 0.13854316 2.63E-05 4.580735655 0.922298943 IGGDAGTSLNSNDY(ph)GYGGQK ddPTM_HeLa_CUDC101_4h_R1 1 IGGDAGTSLNSNDYGYGGQK 20 0 Q96AE4;E9PEB5;Q96AE4-2;C9JSZ1 Q96AE4 FUBP1 Far upstream element-binding protein 1 1 0 IGGDAGT(0.081)S(0.429)LNS(0.008)NDY(0.466)GY(0.016)GGQK 100.38 0.0043407 6047700 1650 1480.8 1342.2 1508.7 1495 1583.7 1724.3 1743.1 1381.8 1809.8 TRUE FALSE FALSE 1456.589501 1526.421693 1414.763392 1570.231307 1384.716828 1553.493561 1790.806829 1941.527458 1324.841619 1799.035229 0.809650349 0.848466816 0.78640116 0.872818543 0.769699673 0.863514808 0.995426215 1.079204802 0.73641783 1 10.81300772 -4.579741345 3.38008228 0.879988577 1.06802372 0.45529416 0.079169505 0.20113291 4.450823297 0.012680961 0.065619234 2.63E-05 4.579741345 0.188035143 AIS(ph)TPEK ddPTM_HeLa_CUDC101_4h_R1 1 AISTPEK 7 0 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 1 0 AIS(0.5)T(0.5)PEK 113.26 0.00059271 0 8460.2 3628.7 6568.7 7544.5 5817.3 4812.1 4595.3 1723.2 7979.8 8354.5 TRUE FALSE FALSE 7468.508181 3740.495946 6923.823791 7852.19732 5388.169369 4720.31721 4772.54226 1919.362123 7650.869266 8304.807062 0.899299421 0.450401306 0.833712781 0.94550027 0.64880127 0.568383729 0.574672262 0.231114595 0.921257918 1 13.01973094 -4.579315389 0.276947175 1.001058687 1.29E-15 0.580286654 0.155227231 3.763127276 0.25326089 0.091214599 1.25871224 2.63E-05 4.579315389 -1.001058687 TSLS(ph)FQDPK ddPTM_HeLa_CUDC101_4h_R1 2 TSLSFQDPK 9 0 P48681 P48681 NES Nestin 1 0 T(0.001)S(0.001)LS(0.997)FQDPK;T(0.046)S(0.001)LS(0.953)FQDPK ; 103.21 0.01473 53431000 9842 8254.5 6852.8 7192.8 6466.4 7963.4 6386.4 4600.1 8113.1 9427.4 TRUE FALSE FALSE 8688.33568 8508.811361 7223.283097 7486.153474 5989.386555 7811.511413 6632.725587 5123.75679 7778.674584 9371.325406 0.927119196 0.907962427 0.770785645 0.798836146 0.639118406 0.833554601 0.707768144 0.546748359 0.830050633 1 13.19403739 -4.579066136 0.217763028 1.03738015 0.304556561 0.574250525 0.084844431 3.423765682 0.160561111 0.069995603 0.686890127 2.64E-05 4.579066136 -0.732823589 ESLT(ph)PGREENPSSVLAQER ddPTM_HeLa_CUDC101_4h_R1 3 ESLTPGREENPSSVLAQER 19 1 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;D6RDA9;Q3MSN4 A0A494C0P1 NR3C1 Glucocorticoid receptor 1 0 ES(0.059)LT(0.941)PGREENPSSVLAQER;ES(0.004)LT(0.987)PGREENPS(0.007)S(0.002)VLAQER;ES(0.024)LT(0.976)PGREENPSSVLAQER ;; 101.5 0.0084205 37738300 3293.7 3015.79 2953.81 3030.02 3158.42 3335.47 2303.81 1728.26 3323.77 3217.06 TRUE FALSE FALSE 2907.617479 3108.702915 3113.501903 3153.597312 2925.429649 3271.851467 2392.668723 1924.998133 3186.762794 3197.924784 0.909220096 0.972100073 0.97360073 0.986138676 0.914790011 1.02311708 0.748194184 0.601952285 0.996509615 1 11.64292029 -4.578120077 3.658954666 0.960931338 0.623355321 0.912751571 0.037724162 0.047781321 1.258618934 0.005867737 0.028760866 2.64E-05 4.578120077 -0.337576018 TPST(ph)PVACSTPAQLK ddPTM_HeLa_CUDC101_4h_R1 2 TPSTPVACSTPAQLK 15 0 Q6PL18;A0A0B4J211 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 0 T(0.005)PS(0.033)T(0.715)PVACS(0.191)T(0.056)PAQLK;TPST(0.486)PVACS(0.486)T(0.027)PAQLK ; 150.9 0.00098089 22972400 9172.9 6826.7 6708.4 7615.7 7896.7 6912 4916.7 3319.5 7525.2 5904.3 TRUE FALSE FALSE 8097.666567 7037.022535 7071.076396 7926.301164 7314.176173 6780.165116 5106.338766 3697.378462 7215.008071 5869.180961 1.379692775 1.198978628 1.204780777 1.350495276 1.246200487 1.155214869 0.870025784 0.629964979 1.229304075 1 12.51894348 -4.577389788 2.1806854 1.204318912 0.620031792 0.796823045 0.098725004 0.188728295 1.519603785 0.021060095 0.165055831 2.65E-05 4.577389788 -0.58428712 EAPGS(ph)PPLSPR ddPTM_HeLa_CUDC101_4h_R1 2 EAPGSPPLSPR 11 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;E9PNR0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 EAPGS(0.951)PPLS(0.049)PR;EAPGS(0.892)PPLS(0.108)PR ; 102.73 0.011169 127869000 6279.1 6304 5970.8 5449.8 7805.6 7548.6 7133.2 7898.4 6610.5 6445.7 TRUE FALSE FALSE 5543.073416 6498.218768 6293.599509 5672.0664 7229.796439 7404.623032 7408.329913 8797.52193 6338.012392 6407.36069 0.865110251 1.014180266 0.982245235 0.885242251 1.12835796 1.155643234 1.156221769 1.373033665 0.989176776 1 12.64551449 -4.57717547 0.668591042 0.93826317 1.493229361 0.788814514 0.065972874 0.754488887 0.297267144 0.012849518 0.291685071 2.65E-05 4.57717547 0.554966191 SQSSEGVSSLSSS(ph)PSNSLETQSQSLSR ddPTM_HeLa_CUDC101_4h_R1 2 SQSSEGVSSLSSSPSNSLETQSQSLSR 27 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 SQSSEGVSSLS(0.066)S(0.243)S(0.689)PS(0.001)NSLETQSQSLSR;SQSSEGVSSLS(0.001)S(0.162)S(0.834)PS(0.003)NSLETQSQSLSR ; 153.69 1.39E-11 139038000 4505.6 3486.8 3287.9 3753.5 4536.3 3911.3 3272.1 2686.8 3903.7 4021.6 TRUE FALSE FALSE 3977.460398 3594.224175 3465.653819 3906.583954 4201.666187 3836.698469 3398.305993 2992.654452 3742.787834 3997.679344 0.994942329 0.899077656 0.866916408 0.977212932 1.051026314 0.959731419 0.850069678 0.748597922 0.936240131 1 11.96494704 -4.577144013 2.341783726 0.98223393 0.749136911 0.608149095 0.052791283 0.161116516 1.541572629 0.007959059 0.057829444 2.65E-05 4.577144013 -0.233097019 DKRPLSGPDVGT(ph)PQPAGLASGAK ddPTM_HeLa_CUDC101_4h_R1 1 DKRPLSGPDVGTPQPAGLASGAK 23 2 O96013 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 DKRPLS(0.243)GPDVGT(0.757)PQPAGLASGAK 74.382 0.0039874 59215000 2853.1 2558.5 2689.3 2779 2898 2400.7 1925.4 1356.4 2335.1 2599.8 TRUE FALSE FALSE 2518.663943 2637.324352 2834.691693 2892.339632 2684.220314 2354.910647 1999.663323 1510.807093 2238.84619 2584.336274 0.974588318 1.020503554 1.096874165 1.119180836 1.038649784 0.911224546 0.77376282 0.584601589 0.866313805 1 11.33557809 -4.576670608 1.665497677 1.011172255 0.555406337 0.812468558 0.066794112 0.152125943 0.619112166 0.008561411 0.091239398 2.65E-05 4.576670608 -0.455765918 SSATLWNSPS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SSATLWNSPSR 11 0 Q3KQU3-4;Q3KQU3;C9JIR3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 SSATLWNS(0.39)PS(0.61)R 135.91 0.0016327 71426000 2870.8 2527 2066.8 2419.4 2462.4 2133.2 1992.6 1625.7 2263.1 1994.3 TRUE FALSE FALSE 2534.289176 2604.853875 2178.53746 2518.07359 2280.753658 2092.512764 2069.455249 1810.763117 2169.81406 1982.437815 1.278370074 1.313964986 1.098918434 1.270190455 1.150479294 1.055525045 1.043894156 0.913402228 1.094518095 1 10.9530599 -4.576061307 1.306807514 1.156767841 0.890649703 0.428637751 0.09388752 0.854886944 1.839000485 0.018561425 0.258816704 2.65E-05 4.576061307 -0.266118137 KS(ph)PRPAGPQLFLPDPDPQR ddPTM_HeLa_CUDC101_4h_R1 1 KSPRPAGPQLFLPDPDPQR 19 2 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 0 KS(1)PRPAGPQLFLPDPDPQR 56.404 0.034803 129990000 2156.6 1586.2 1709.3 1823.8 2360.2 2051 2215.8 2200.1 2129.5 2040.8 TRUE FALSE FALSE 1903.806617 1635.068942 1801.709928 1898.182447 2186.092748 2011.880592 2301.264148 2450.550491 2041.721109 2028.661231 0.938454676 0.805984221 0.88812755 0.93568232 1.077603651 0.99172822 1.134375771 1.207964373 1.006437683 1 10.98631225 -4.572703997 0.98181183 0.950517184 1.277544955 0.654908933 0.065809984 0.670403391 0.680822693 0.011183899 0.204971937 2.67E-05 4.572703997 0.327027771 NVPHEDICEDS(ph)DIDGDYR ddPTM_HeLa_CUDC101_4h_R1 5 NVPHEDICEDSDIDGDYR 18 0 O00629 O00629 KPNA4 Importin subunit alpha-3 1 0 NVPHEDICEDS(1)DIDGDYR;NVPHEDICEDS(1)DIDGDYR;NVPHEDICEDS(1)DIDGDYR;NVPHEDICEDS(1)DIDGDYR;NVPHEDICEDS(1)DIDGDYR ;;;; 194.92 1.28E-16 157439000 10032.1 7612.9 7375.3 7552.14 7666.78 7635.13 8825.78 8911.3 7143.8 7816.78 TRUE FALSE FALSE 8856.152446 7847.444425 7774.031027 7860.148912 7101.216914 7489.502616 9166.193291 9925.726371 6849.32954 7770.285445 1.139746089 1.009930006 1.000482039 1.011565015 0.913893957 0.963864541 1.17964692 1.277395334 0.881477211 1 12.92375188 -4.572554987 4.782869332 1.038638195 1.25775677 0.554163841 0.078285056 0.108887003 5.278259806 0.011003349 0.046849367 2.68E-05 4.572554987 0.219118575 SRDAT(ph)PPVS(ph)PINMEDQER ddPTM_HeLa_CUDC101_4h_R1 2 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 2 0 S(0.297)RDAT(0.735)PPVS(0.969)PINMEDQER;S(0.032)RDAT(0.968)PPVS(1)PINMEDQER ; 112.55 0.00054642 33157000 6460.5 6564.4 5491.3 4905.6 6572.2 5813.6 6059 5919 5792 6025.6 TRUE FALSE FALSE 5703.209983 6766.641383 5788.176288 5105.671572 6087.3819 5702.715266 6292.69766 6592.795035 5553.251308 5989.759463 0.952160102 1.129701689 0.966345364 0.852400101 1.016298223 0.952077508 1.05057602 1.100677761 0.92712426 1 12.54828235 -4.572236366 3.967328034 0.979620641 1.092517914 0.275963495 0.067172597 0.200576775 6.397820091 0.008908618 0.041868108 2.68E-05 4.572236366 0.112897274 AVFVDLEPTVIDEVRT(ph)GTYR ddPTM_HeLa_CUDC101_4h_R1 3 AVFVDLEPTVIDEVRTGTYR 20 1 Q9BQE3;F5H5D3;A0A1W2PQM2;F8VVB9;F8VQQ4;F8VS66;F8VRZ4;F8VX09;F8VWV9;F8VRK0;P68363;P68363-2;Q71U36-2;Q71U36 Q9BQE3;P68363 TUBA1C;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain 1 0 AVFVDLEPTVIDEVRT(0.954)GT(0.046)YR;AVFVDLEPT(0.001)VIDEVRT(0.724)GT(0.249)Y(0.026)R;AVFVDLEPTVIDEVRT(0.787)GT(0.21)Y(0.003)R ;; 158.89 1.00E-05 16228700 4746.4 4055.1 4138.3 3999.8 4707.1 4076.4 4213.9 4019.8 3615.1 4151.8 TRUE FALSE FALSE 4190.034187 4180.032825 4362.029016 4162.929133 4359.866611 3998.649462 4376.431535 4477.397783 3466.084048 4127.104909 1.015247802 1.012824466 1.056922252 1.008680231 1.0563983 0.968875168 1.060411991 1.084876174 0.839834248 1 12.0109144 -4.57093646 8.478957755 1.012871634 1.07887861 0.169725706 0.059949043 0.129924383 20.81775573 0.00322344 0.01220083 2.69E-05 4.57093646 0.066006977 DYTGCSTSESLS(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 DYTGCSTSESLSPVK 15 0 O95297-4;O95297-2;O95297 O95297-4 MPZL1 Myelin protein zero-like protein 1 1 0 DYTGCSTSES(0.022)LS(0.978)PVK;DYTGCSTSES(0.034)LS(0.966)PVK ; 231.17 4.39E-43 12038100 3509.2 2562.9 2171.77 2300.95 2238.03 2709.1 1777.4 1811.41 2326.84 1894.76 TRUE FALSE FALSE 3097.856896 2641.859911 2289.182455 2394.792687 2072.934986 2657.428431 1845.954913 2017.613592 2230.92667 1883.489883 1.64474305 1.402640882 1.215394081 1.271465649 1.100581959 1.410906666 0.980071584 1.071210209 1.184464377 1 10.87919257 -4.570092745 0.896366374 1.30809165 0.932004966 0.160969191 0.182242884 2.43878677 1.958797293 0.040645807 0.802574926 2.69E-05 4.570092745 -0.376086685 PRAS(ph)QGPPS(ph)AIS(ph)RHS(ph)PGPTPQPDCSLR ddPTM_HeLa_CUDC101_4h_R1 1 PRASQGPPSAISRHSPGPTPQPDCSLR 27 2 Q4ZG55-4;Q4ZG55 Q4ZG55-4 GREB1 Protein GREB1 4 0 PRAS(0.986)QGPPS(0.965)AIS(0.886)RHS(0.645)PGPT(0.376)PQPDCS(0.142)LR 40.145 0.0030244 0 522.07 507.75 592.98 372.78 567.17 513.59 711.51 755.86 810.46 800.09 TRUE FALSE FALSE 460.873746 523.3931757 625.0382925 387.9835797 525.3309991 503.7941264 738.953179 841.9040471 777.0524958 795.3310291 0.579474117 0.658082178 0.785884455 0.487826534 0.660518677 0.633439547 0.929113981 1.05855803 0.977017704 1 9.635411647 -4.568952221 5.068953738 0.744905352 1.031671693 0.332731879 0.155673372 0.191460021 10.9134984 0.02648343 0.110710142 2.70E-05 4.568952221 0.286766341 GSDS(ph)DSEGDNPEK ddPTM_HeLa_CUDC101_4h_R1 2 GSDSDSEGDNPEK 13 0 I3L4J1;Q9UN37 I3L4J1 VPS4A Vacuolar protein sorting-associated protein 4A 1 0 GS(0.196)DS(0.789)DS(0.015)EGDNPEK;GS(0.002)DS(0.973)DS(0.024)EGDNPEK ; 225.21 7.62E-33 92907000 11560.6 5235.4 9179.9 10305.8 6764.6 6211.8 6085.4 2864.7 9530.5 10981.9 TRUE FALSE FALSE 10205.48399 5396.696469 9676.193162 10726.11507 6265.588935 6093.320265 6320.115916 3190.805868 9137.648756 10916.57917 0.934860988 0.494357837 0.886375943 0.982552767 0.573951678 0.558171215 0.578946556 0.292289903 0.837043236 1 13.41423322 -4.56794991 0.304044372 1.004740676 6.05E-16 0.53662317 0.157563284 3.065779619 0.239368579 0.070844556 1.114827781 2.70E-05 4.56794991 -1.004740676 S(ph)MSAPVIFDR ddPTM_HeLa_CUDC101_4h_R1 1 SMSAPVIFDR 10 0 D6RC15;O60749 D6RC15 SNX2 Sorting nexin-2 1 0 S(0.935)MS(0.065)APVIFDR 112.94 0.0072773 8117900 1802.1 1501.2 1447.6 1219.6 1412.2 1850.9 1795.4 1909.6 1736.2 1886.7 TRUE FALSE FALSE 1590.86057 1547.450193 1525.861635 1269.34056 1308.024819 1815.597166 1864.649179 2126.981145 1664.633101 1875.477824 0.848242805 0.825096502 0.813585538 0.676809154 0.697435503 0.968071786 0.994226194 1.13410093 0.88757813 1 10.87304249 -4.567863103 2.05123034 0.877731725 1.131499609 0.44455782 0.100730108 0.418059628 2.869814644 0.018125425 0.155754796 2.70E-05 4.567863103 0.253767884 ETYEVEASTFCFPESVDVGGAS(ph)PHSK ddPTM_HeLa_CUDC101_4h_R1 1 ETYEVEASTFCFPESVDVGGASPHSK 26 0 C9JUH3;A0A0A0MT72;Q9BSQ5-3;Q9BSQ5-4;Q9BSQ5;Q9BSQ5-2 C9JUH3 CCM2 Cerebral cavernous malformations 2 protein 1 0 ETYEVEASTFCFPES(0.004)VDVGGAS(0.986)PHS(0.01)K 111.68 6.92E-09 0 726.59 568.44 584.85 721.99 640.51 616.65 514.02 427.76 762.92 571.01 TRUE FALSE FALSE 641.4202216 585.9529626 616.4687601 751.4358729 593.2608534 604.8884287 533.8459236 476.4544693 731.4721147 567.6136071 1.130029678 1.032309577 1.086071145 1.323851055 1.04518434 1.065669359 0.940509383 0.839399309 1.288679668 1 9.148765365 -4.567409564 2.094992071 1.081327206 0.831640982 0.405033546 0.107090123 0.301500694 2.180551357 0.013282439 0.111595601 2.71E-05 4.567409564 -0.249686224 YLQDQLS(ph)PLTR ddPTM_HeLa_CUDC101_4h_R1 3 YLQDQLSPLTR 11 0 H0YC17;E7EMV7;A0A0A0MRZ4;Q15025-7;Q15025-8;Q15025-5;Q15025-6;Q15025-4;Q15025-3;Q15025-2;Q15025 H0YC17 TNIP1 TNFAIP3-interacting protein 1 1 0 YLQDQLS(0.935)PLT(0.065)R;YLQDQLS(0.98)PLT(0.02)R;YLQDQLS(0.945)PLT(0.055)R ;; 139.78 0.0014251 24443400 5151.3 4436.5 3922 4378.8 5132.9 4174.1 3750.9 3002.5 4454.8 4429.6 TRUE FALSE FALSE 4547.472423 4573.183306 4134.035183 4557.386391 4754.256193 4094.485997 3895.573469 3344.292463 4271.171258 4403.252542 1.032753034 1.0385921 0.938859433 1.035004544 1.079714631 0.929877621 0.884703621 0.759505032 0.9700037 1 12.10435388 -4.567120678 1.543611461 1.01650837 0.739149462 0.791215809 0.040836486 0.185462184 0.612762735 0.005468581 0.065172665 2.71E-05 4.567120678 -0.277358907 LILDS(ph)AR ddPTM_HeLa_CUDC101_4h_R1 2 LILDSAR 7 0 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 1 0 LILDS(1)AR;LILDS(1)AR ; 117.81 0.012246 6533400 5106.7 3414.4 3297.1 3952.2 4020.7 4242.3 3113.6 2490.5 3026.2 3347.9 TRUE FALSE FALSE 4508.100367 3519.593617 3475.351199 4113.387799 3724.100971 4161.385196 3233.692595 2774.008453 2901.458755 3327.986542 1.354602944 1.057574474 1.044280425 1.235998928 1.11902525 1.250421281 0.971666368 0.833539565 0.871836084 1 11.70043388 -4.566375957 4.346400334 1.159756111 0.858460803 0.262500772 0.13684671 0.149472214 6.013218006 0.019317455 0.08705064 2.71E-05 4.566375957 -0.301295308 DSGSSSVSSTSSSSSSS(ph)PGDK ddPTM_HeLa_CUDC101_4h_R1 2 DSGSSSVSSTSSSSSSSPGDK 21 0 Q9H7S9 Q9H7S9 ZNF703 Zinc finger protein 703 1 0 DSGSSSVSSTSSSS(0.001)S(0.01)S(0.091)S(0.898)PGDK;DSGSSSVSSTSSSS(0.001)S(0.005)S(0.205)S(0.79)PGDK ; 320.25 1.49E-169 10281200 2684.3 2503.3 3235 2901.5 3345.1 2824.3 2199.8 1626.62 3331 3266.4 TRUE FALSE FALSE 2369.650423 2580.423706 3409.893885 3019.835711 3098.338637 2770.431183 2284.647023 1811.787846 3193.69477 3246.971308 0.729803315 0.794717126 1.050176784 0.930046935 0.954224212 0.853235499 0.703624026 0.55799318 0.983591928 1 11.66487892 -4.565561935 2.212342447 0.887154937 0.553520298 0.59921763 0.094233604 0.266731137 2.203465008 0.017011129 0.135193068 2.72E-05 4.565561935 -0.333634639 LSPLPPGS(ph)PGSAAR ddPTM_HeLa_CUDC101_4h_R1 2 LSPLPPGSPGSAAR 14 0 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 LSPLPPGS(0.667)PGS(0.333)AAR;LSPLPPGS(0.638)PGS(0.362)AAR ; 159.41 5.30E-05 26062000 4741.3 4315.3 3807.4 4057.3 5314.1 4139.2 4575.7 4503.1 4857 4582 TRUE FALSE FALSE 4185.532001 4448.249278 4013.239561 4222.774231 4922.08943 4060.251656 4752.186282 5015.714702 4656.792404 4554.74606 0.918938607 0.976618503 0.881111594 0.927115184 1.080650681 0.891433156 1.043348239 1.101206222 1.022404398 1 12.15315491 -4.565387767 6.211076284 0.958570716 1.08797227 0.376469891 0.058565984 0.113690189 10.98915177 0.007685362 0.030387366 2.72E-05 4.565387767 0.129401554 TEES(ph)PASDEAGEKEAK ddPTM_HeLa_CUDC101_4h_R1 4 TEESPASDEAGEKEAK 16 1 P05114;A6NEL0;A6NL93 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 T(0.308)EES(0.661)PAS(0.031)DEAGEKEAK;T(0.035)EES(0.587)PAS(0.378)DEAGEKEAK;T(0.062)EES(0.705)PAS(0.232)DEAGEKEAK;T(0.368)EES(0.432)PAS(0.2)DEAGEKEAK ;;; 102.69 0.0019231 100631000 13865.3 14134.5 14333.4 14275.1 14468.1 14094.6 15265.5 15233.9 13913.1 16499.7 TRUE FALSE FALSE 12240.03055 14569.96719 15108.30696 14857.30028 13400.81709 13825.76899 15854.29545 16968.0656 13339.59613 16401.55905 0.746272383 0.888328186 0.921150661 0.90584683 0.817045321 0.84295456 0.96663344 1.034539799 0.813312691 1 14.00154534 -4.565240813 3.982029889 0.876779081 1.023478251 0.402418861 0.066513586 0.228425768 7.496704953 0.013211518 0.062794445 2.72E-05 4.565240813 0.14669917 GTSS(ph)PDYR ddPTM_HeLa_CUDC101_4h_R1 2 GTSSPDYR 8 0 Q66K14;Q66K14-2;G3V133 Q66K14 TBC1D9B TBC1 domain family member 9B 1 0 GT(0.003)S(0.327)S(0.67)PDYR;GT(0.001)S(0.073)S(0.926)PDYR ; 116.37 0.008669 74673000 20896 9167.7 18828.9 20500.2 13554.9 12689 13331.9 6166.4 19501.1 22444 TRUE FALSE FALSE 18446.60256 9450.145971 19846.84729 21336.28677 12554.98203 12446.97847 13846.11585 6868.358051 18697.2564 22310.50209 0.826812525 0.423573882 0.889574211 0.956333779 0.562738659 0.55789773 0.620609782 0.307853137 0.838047316 1 14.44543536 -4.564586943 0.176944861 1.064880512 2.42E-16 0.433573543 0.168673261 9.666952064 0.341521024 0.32857403 2.393879728 2.73E-05 4.564586943 -1.064880512 TPEDGDYS(ph)YEIIEK ddPTM_HeLa_CUDC101_4h_R1 1 TPEDGDYSYEIIEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 TPEDGDYS(1)YEIIEK 132.23 0.00076587 29509000 2457.2 1991.6 1821.8 1747.7 2193.5 2135.8 1695.9 1400.6 2506.8 1961.4 TRUE FALSE FALSE 2169.170741 2052.958835 1920.292019 1818.97876 2031.689875 2095.063173 1761.311431 1560.038643 2403.468643 1949.733506 1.112547297 1.052943302 0.984899738 0.932937119 1.042034652 1.074538222 0.903360088 0.800129165 1.23271649 1 10.92906123 -4.564083675 3.339300885 1.041014876 0.811797458 0.531683439 0.077758915 0.114038047 2.485267137 0.00852853 0.04602024 2.73E-05 4.564083675 -0.229217418 EFSGPST(ph)PTGTLEFEGGEVSLEGGK ddPTM_HeLa_CUDC101_4h_R1 2 EFSGPSTPTGTLEFEGGEVSLEGGK 25 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 EFS(0.011)GPS(0.195)T(0.743)PT(0.043)GT(0.008)LEFEGGEVSLEGGK;EFS(0.011)GPS(0.173)T(0.759)PT(0.054)GT(0.003)LEFEGGEVSLEGGK ; 121.49 1.04E-09 144394000 15950.2 12734.9 11559.9 12062.8 13086.6 12154.6 10474.8 9072.3 12560.8 12252 TRUE FALSE FALSE 14080.54173 13127.24717 12184.86316 12554.77312 12121.22759 11922.77126 10878.81654 10105.05396 12043.03851 12179.12456 1.156121006 1.077848175 1.000471183 1.030843643 0.995246213 0.978951418 0.89323469 0.829702817 0.988826286 1 13.57212281 -4.563526511 0.662459997 1.071771283 0.732048423 0.671038527 0.048714226 1.091992757 0.416733087 0.011029013 0.257437336 2.73E-05 4.563526511 -0.33972286 RST(ph)DSSSVSGSLQQETK ddPTM_HeLa_CUDC101_4h_R1 1 RSTDSSSVSGSLQQETK 17 1 Q9H8G2;A0A3B3ISJ3 Q9H8G2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 0 RS(0.236)T(0.764)DSSSVSGSLQQETK 152.59 2.70E-07 0 1604.1 1248.1 1326.2 1536.4 1498.4 1326.8 1000.9 715.34 959.08 1254.3 TRUE FALSE FALSE 1416.06983 1286.552482 1397.898384 1599.061033 1387.866017 1301.493501 1039.505048 796.7714141 919.5463165 1246.839368 1.135727557 1.031851027 1.12115355 1.282491614 1.113107312 1.043834141 0.833712084 0.63903293 0.737501831 1 10.2840599 -4.563515056 2.105774556 1.087211359 0.626486363 0.504439766 0.13265605 0.153983635 1.124054742 0.012526774 0.105700883 2.73E-05 4.563515056 -0.460724996 ISTPQT(ph)NTVPIKPLISTPPVSSQPK ddPTM_HeLa_CUDC101_4h_R1 1 ISTPQTNTVPIKPLISTPPVSSQPK 25 1 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 0 IS(0.108)T(0.108)PQT(0.391)NT(0.391)VPIKPLIS(0.001)T(0.001)PPVSSQPK 66.3 0.0021394 18196000 1606 1515.3 1510.8 1381.7 1506.6 1531.6 1878.3 2018.3 1408.9 1784.5 TRUE FALSE FALSE 1417.747115 1561.984597 1592.478418 1438.051698 1395.46112 1502.387282 1950.74666 2248.055114 1350.824546 1773.885715 0.7992325 0.880544098 0.897734507 0.810678888 0.786669123 0.846947055 1.099702559 1.267305495 0.761505961 1 10.79269735 -4.56330265 3.18883312 0.882763526 1.250202926 0.774382458 0.072952662 0.108977695 2.134965414 0.012381308 0.069454349 2.73E-05 4.56330265 0.367439401 LCSSAETLESHPDIGKS(ph)TPQK ddPTM_HeLa_CUDC101_4h_R1 2 LCSSAETLESHPDIGKSTPQK 21 1 O96028-3;O96028;O96028-6;O96028-5 O96028-3;O96028-5 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 LCSSAETLESHPDIGKS(0.5)T(0.5)PQK;LCSSAETLESHPDIGKS(0.5)T(0.5)PQK ; 114.58 6.97E-06 14542300 3230 2446.36 2164.4 2534.57 2985.8 2770.72 2192.36 1766.84 3354 2646.06 TRUE FALSE FALSE 2851.384296 2521.729452 2281.414011 2637.94072 2765.543483 2717.873132 2276.92006 1967.969924 3215.7467 2630.321117 1.084044179 0.958715434 0.867351897 1.002896834 1.051409071 1.033285675 0.865643379 0.748186186 1.222568104 1 11.36102322 -4.5631551 2.827607679 1.020445489 0.754985332 0.52757306 0.086497213 0.135158206 2.002461257 0.009589933 0.059774072 2.73E-05 4.5631551 -0.265460157 SQDSYPGS(ph)PSLSPR ddPTM_HeLa_CUDC101_4h_R1 1 SQDSYPGSPSLSPR 14 0 A0A0D9SEU5;R4GMX8;Q6VN20-2;Q6VN20-3;Q6VN20 A0A0D9SEU5 RANBP10 Ran-binding protein 10 1 0 SQDSYPGS(0.973)PS(0.027)LSPR 230.96 3.02E-43 28613000 2785.1 2722.1 2385.1 2275.9 2819.2 2458.1 1994.4 1571 2344 2604.9 TRUE FALSE FALSE 2458.6348 2805.964675 2514.045721 2368.721039 2611.233233 2411.215838 2071.324676 1749.83629 2247.379328 2589.405939 0.949497629 1.083632594 0.970896715 0.914773927 1.00842946 0.931184949 0.799922733 0.675767466 0.867913097 1 11.33840544 -4.562362508 1.674516847 0.98133305 0.647460732 0.75008595 0.055078894 0.153078738 0.622435031 0.006180679 0.068016052 2.74E-05 4.562362508 -0.333872317 LLLAS(ph)PPNER ddPTM_HeLa_CUDC101_4h_R1 1 LLLASPPNER 10 0 Q52LW3 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 LLLAS(1)PPNER 93.839 0.022939 22350000 1498.1 1149.5 1223.3 1445.6 1233.1 1248.6 1006.1 843.1 1124.2 975.64 TRUE FALSE FALSE 1322.494989 1184.914733 1289.435298 1504.557816 1142.13667 1224.785035 1044.905614 939.0750961 1077.86 969.8368499 1.363626252 1.221767076 1.329538364 1.551351463 1.177658562 1.262877396 1.077403497 0.968281517 1.111382807 1 9.921598261 -4.562158867 3.40355571 1.222335445 0.981019149 0.284855963 0.143537577 0.315185564 7.19010324 0.025303404 0.135106709 2.74E-05 4.562158867 -0.241316296 AS(ph)WES(ph)LDEEWRAPQAGSR ddPTM_HeLa_CUDC101_4h_R1 1 ASWESLDEEWRAPQAGSR 18 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 2 0 AS(1)WES(1)LDEEWRAPQAGSR 68.291 0.023049 5759900 1772.1 1869 1804.9 1419.1 1783.9 1921.4 1341.9 1148.4 2165.6 1597.2 TRUE FALSE FALSE 1564.377124 1926.581675 1902.478354 1476.977032 1652.305251 1884.752496 1393.657533 1279.129214 2076.333051 1587.699783 0.98531041 1.213442047 1.198260763 0.930262161 1.040691237 1.187096273 0.877784041 0.805649297 1.307761753 1 10.63272243 -4.56211087 11.61564022 1.032661529 0.823627557 0.288190302 0.131839937 0.486998286 143.1801069 0.014641447 0.054926353 2.74E-05 4.56211087 -0.209033972 SVESTS(ph)PEPSK ddPTM_HeLa_CUDC101_4h_R1 1 SVESTSPEPSK 11 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;P18583-8 P18583-10 SON Protein SON 1 0 SVES(0.001)T(0.247)S(0.752)PEPS(0.001)K 156 0.00018799 38106000 3002 2920.6 2539.9 2506.9 2906.4 2571.7 2289.7 1997.9 2895.7 2807.7 TRUE FALSE FALSE 2650.110111 3010.580224 2677.214677 2609.142218 2692.000662 2522.649107 2378.014496 2225.33286 2776.33802 2790.999676 0.949520035 1.078674516 0.959231454 0.934841462 0.964529192 0.903851451 0.852029657 0.797324657 0.994746809 1 11.44656624 -4.56181405 0.800039631 0.982596241 0.731986582 0.77144477 0.035838885 0.661059044 0.396855615 0.006172933 0.133349006 2.74E-05 4.56181405 -0.250609659 TSETSISPPGSSIGS(ph)PNR ddPTM_HeLa_CUDC101_4h_R1 1 TSETSISPPGSSIGSPNR 18 0 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 TSET(0.001)S(0.021)IS(0.286)PPGS(0.158)S(0.201)IGS(0.332)PNR 82.248 0.0081852 22489000 1167.3 1267.3 1300.3 1133.8 1358.1 1432 1458.9 1433.5 1472 1272.1 TRUE FALSE FALSE 1030.470864 1306.344011 1370.598151 1180.041265 1257.915669 1404.686986 1515.170262 1596.683846 1411.323537 1264.533493 0.814901993 1.033063986 1.083876512 0.933183084 0.994766589 1.110834149 1.198204927 1.262666315 1.11608237 1 10.30438953 -4.56165818 0.599179622 0.924122883 1.431065035 0.433313215 0.092484102 1.25317571 0.378603007 0.017039561 0.406845557 2.74E-05 4.56165818 0.506942152 TEELIES(ph)PKLESSEGEIIQTVDR ddPTM_HeLa_CUDC101_4h_R1 5 TEELIESPKLESSEGEIIQTVDR 23 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 T(0.001)EELIES(0.991)PKLES(0.005)S(0.001)EGEIIQT(0.001)VDR;T(0.004)EELIES(0.991)PKLES(0.002)S(0.003)EGEIIQTVDR;T(0.001)EELIES(0.992)PKLES(0.005)S(0.002)EGEIIQTVDR;T(0.002)EELIES(0.997)PKLES(0.001)SEGEIIQTVDR;T(0.003)EELIES(0.995)PKLES(0.001)SEGEIIQTVDR ;;;; 72.167 0.00098826 666753200 4269 4423.91 3741.02 3899.95 3968.13 4210.84 4264.48 4170.75 4733.21 4665.42 TRUE FALSE FALSE 3768.594291 4560.205423 3943.270857 4059.006818 3675.408956 4130.525243 4428.962422 4645.531321 4538.10508 4637.669874 0.812605121 0.983296687 0.850269848 0.875225475 0.792511984 0.890646673 0.954997346 1.001695129 0.978531289 1 12.17918441 -4.561063782 3.389105927 0.898392567 0.995790324 0.199124605 0.06749602 0.351857014 7.953393783 0.011333378 0.060862142 2.75E-05 4.561063782 0.097397756 RDS(ph)LGAYASQDANEQGQDLGKR ddPTM_HeLa_CUDC101_4h_R1 2 RDSLGAYASQDANEQGQDLGKR 22 2 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RDS(0.99)LGAY(0.01)ASQDANEQGQDLGKR;RDS(0.991)LGAY(0.008)AS(0.001)QDANEQGQDLGKR ; 159.4 1.50E-07 86856000 2345.4 2101.46 2257.97 1966.52 2204.02 2388.7 1744.64 1413.85 1921.73 2128.19 TRUE FALSE FALSE 2070.475767 2166.203492 2380.042688 2046.723186 2041.433836 2343.139527 1811.931349 1574.796969 1842.515476 2115.531431 0.978702437 1.023952403 1.125033007 0.967474723 0.964974477 1.107589087 0.856489921 0.744397812 0.870946869 1 11.04680441 -4.560042583 5.329395282 1.004597731 0.768079506 0.602096006 0.069132322 0.062375325 4.388982917 0.007497183 0.031200407 2.75E-05 4.560042583 -0.236518225 NEPTTRS(ph)PVSSQQSLK ddPTM_HeLa_CUDC101_4h_R1 1 NEPTTRSPVSSQQSLK 16 1 Q8IWJ2 Q8IWJ2 GCC2 GRIP and coiled-coil domain-containing protein 2 1 0 NEPT(0.305)T(0.305)RS(0.389)PVS(0.001)SQQSLK 79.565 0.0094296 13902000 1535.2 1582.2 1465.9 1435.3 1821.2 1440.1 1192.3 955.6 1682.2 1400.3 TRUE FALSE FALSE 1355.246183 1630.945707 1545.150988 1493.837738 1686.853704 1412.632492 1238.28741 1064.381641 1612.859004 1391.970953 0.973616712 1.171680848 1.110045425 1.073181688 1.211845477 1.014843369 0.889592852 0.76465794 1.158687256 1 10.44291339 -4.559741975 2.681165252 1.032965699 0.771728805 0.536486444 0.089272516 0.206525675 2.696832788 0.013398549 0.088534001 2.76E-05 4.559741975 -0.261236895 SRT(ph)GSESSQTGTS(ph)TTSSR ddPTM_HeLa_CUDC101_4h_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 S(0.017)RT(0.983)GS(0.003)ES(0.025)S(0.006)QT(0.219)GT(0.219)S(0.484)T(0.035)T(0.008)SSR 148.19 0.00062232 50765000 6340.8 6158.4 5580.1 5458.3 6588.9 7192.4 7536.5 8284.3 6680.2 6492.1 TRUE FALSE FALSE 5597.541036 6348.133004 5881.777085 5680.913067 6102.849974 7055.216953 7827.18533 9227.351226 6404.839329 6453.4847 0.867367213 0.983675223 0.911411022 0.880286129 0.945667381 1.093241447 1.21286184 1.429824607 0.992462154 1 12.65586267 -4.558255776 1.243658137 0.932572923 1.510994127 0.920323669 0.046532913 0.201842236 0.374039331 0.008437424 0.129579494 2.77E-05 4.558255776 0.578421204 GVNTFS(ph)PEGR ddPTM_HeLa_CUDC101_4h_R1 2 GVNTFSPEGR 10 0 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 0 GVNT(0.004)FS(0.996)PEGR;GVNT(0.001)FS(0.999)PEGR ; 127.52 0.0029957 178307000 8934.5 7402.3 7416 6953.2 8006.7 6768 5752.5 4562 7907.9 7451.2 TRUE FALSE FALSE 7887.211454 7630.356089 7816.931392 7236.78155 7416.061693 6638.911676 5974.375852 5081.31964 7581.933015 7406.879931 1.064849373 1.03017143 1.055360889 0.977035083 1.001239626 0.896316902 0.806598177 0.686027003 1.023633849 1 12.85465024 -4.55713335 0.906378524 1.032450667 0.583987064 0.963413047 0.022220675 0.225618149 0.184214831 0.004446178 0.089667081 2.77E-05 4.55713335 -0.448463603 YMAENPTAGVVQEEEEDNLEY(ph)DSDGNPIAPTKK ddPTM_HeLa_CUDC101_4h_R1 1 YMAENPTAGVVQEEEEDNLEYDSDGNPIAPTKK 33 1 A0A0A0MSJ0;Q86XP3-2;Q86XP3;J3KRE3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 1 0 YMAENPT(0.001)AGVVQEEEEDNLEY(0.987)DS(0.013)DGNPIAPTKK 74.769 2.05E-06 19938000 3326.9 3147.6 2927.2 2368.3 3345.7 3045.1 3076.2 2981.3 3310.1 3197.9 TRUE FALSE FALSE 2936.925825 3244.573825 3085.453286 2464.889511 3098.894377 2987.019791 3194.850064 3320.679141 3173.656277 3178.878749 0.923887338 1.020666116 0.970610561 0.775395888 0.97483881 0.939645714 1.005024198 1.044607047 0.998357134 1 11.63430227 -4.556393172 3.317626616 0.953858732 1.040448541 0.181947989 0.065087235 0.331503569 7.144279724 0.009215567 0.050863805 2.78E-05 4.556393172 0.086589809 LSDPPTSPSS(ph)PSQMMPHVQTHF ddPTM_HeLa_CUDC101_4h_R1 1 LSDPPTSPSSPSQMMPHVQTHF 22 0 Q13496-2;Q13496 Q13496-2 MTM1 Myotubularin 1 0 LSDPPT(0.004)S(0.015)PS(0.194)S(0.756)PS(0.03)QMMPHVQTHF 64.843 0.0052719 5924100 920.61 818.3 519.59 865.91 1054.2 940.67 1044.8 1081.4 966.54 951.1 TRUE FALSE FALSE 812.6974914 843.5108531 547.6806071 901.2255526 976.4337663 922.728287 1085.098286 1204.502205 926.6988121 945.4428149 0.85959455 0.89218601 0.579284753 0.953231162 1.032779298 0.97597472 1.14771435 1.274008524 0.980174366 1 9.884846389 -4.55522236 1.084484706 0.905163481 1.361009848 0.545048912 0.116859146 0.73327932 0.946841858 0.019214128 0.337897489 2.78E-05 4.55522236 0.455846367 SHDDGNIDLES(ph)DSFLK ddPTM_HeLa_CUDC101_4h_R1 1 SHDDGNIDLESDSFLK 16 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;P18583-8 P18583-10 SON Protein SON 1 0 SHDDGNIDLES(0.754)DS(0.246)FLK 137.45 0.0003737 5493300 1399 1144.5 1141.1 1099.4 1173.7 1361.3 1499.5 1561.4 1263 1618.6 TRUE FALSE FALSE 1235.011341 1179.760688 1202.791318 1144.238284 1087.118489 1335.335471 1557.336217 1739.143465 1210.938605 1608.972495 0.767577659 0.733238568 0.747552442 0.711160873 0.675660083 0.829930577 0.967907296 1.080903166 0.752616101 1 10.65192395 -4.55447461 3.000733031 0.835381936 1.07132417 0.438053824 0.099095295 0.280701591 4.771177472 0.018828336 0.113534519 2.79E-05 4.55447461 0.235942234 AS(ph)GQAFELILSPR ddPTM_HeLa_CUDC101_4h_R1 3 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 AS(1)GQAFELILSPR;AS(1)GQAFELILSPR;AS(1)GQAFELILSPR ;; 186.72 4.56E-11 188409000 2154.6 2557.01 2291.53 2349.02 2706.04 2276.17 1560.14 980.66 2173.4 2442.24 TRUE FALSE FALSE 1902.041054 2635.788447 2415.417043 2444.823189 2506.42082 2232.75585 1620.315122 1092.29437 2083.811532 2427.713448 0.783470164 1.08570822 0.994934985 1.007047677 1.032420372 0.919694971 0.667424372 0.449927223 0.858343283 1 11.24538243 -4.55402238 2.462394433 0.935580657 0.45046335 0.786066083 0.086631815 0.146526856 1.55625565 0.015573747 0.113668238 2.79E-05 4.55402238 -0.485117307 AKEQEAEPEEQEEDS(ph)SSDPR ddPTM_HeLa_CUDC101_4h_R1 1 AKEQEAEPEEQEEDSSSDPR 20 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 0 AKEQEAEPEEQEEDS(0.378)S(0.378)S(0.245)DPR 92.428 0.0008791 6223200 1391.5 1147.9 1280.8 1437.6 1369.4 1392.5 1543.7 1623.9 1483.4 1459.8 TRUE FALSE FALSE 1228.390479 1183.265438 1350.043922 1496.231542 1268.38209 1365.940383 1603.241026 1808.758212 1422.253624 1451.117045 0.846513714 0.815416953 0.930348056 1.031089496 0.874072905 0.941302693 1.10483233 1.246459215 0.980109516 1 10.50294817 -4.55351943 2.196221464 0.921453494 1.254924791 0.724122051 0.06424152 0.175694562 1.410903916 0.01083605 0.089547733 2.80E-05 4.55351943 0.333471296 (ac)STGPTAAT(ph)GSNRR ddPTM_HeLa_CUDC101_4h_R1 1 STGPTAATGSNRR 13 1 Q15836 Q15836 VAMP3 Vesicle-associated membrane protein 3 1 0 STGPTAAT(0.5)GS(0.5)NRR 83.877 0.0074017 2321700 126 154.13 185.38 330.71 127.75 172.17 117.16 0 320.89 295.62 TRUE FALSE FALSE 111.230471 158.8785626 195.4022035 344.1977833 118.326137 168.8861441 121.6789004 0 307.6627784 293.8616391 0.378513069 0.540657716 0.664946279 1.171291987 0.402659351 0.574713136 0.414068678 0 1.046964753 1 8.198993231 -4.553466498 1.341828334 0.702329027 1.57E-14 0.441015335 0.256101884 0.746191875 1.680258399 0.042572989 0.612939588 2.80E-05 4.553466498 -0.702329027 RKSLVGTPY(ph)WMAPELISR ddPTM_HeLa_CUDC101_4h_R1 1 RKSLVGTPYWMAPELISR 18 2 O96013;O96013-2;O96013-4;M0R1R1;O96013-3 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 RKS(0.025)LVGT(0.192)PY(0.783)WMAPELISR 79.347 0.010802 26940000 2611.2 2486.9 2659.6 2571.8 3047.8 2759.2 3084.5 3170 2310.4 3331.7 TRUE FALSE FALSE 2305.119094 2563.518441 2803.386021 2676.68912 2822.969866 2706.572857 3203.470198 3530.859986 2215.164334 3311.8829 0.696014673 0.774036558 0.846462905 0.808207657 0.852376111 0.817230844 0.967265539 1.066118608 0.668853459 1 11.69343595 -4.553139754 3.018229685 0.841109328 1.05901422 0.439699344 0.091091141 0.256617357 4.4212708 0.015980277 0.09617717 2.80E-05 4.553139754 0.217904892 S(ph)GTPTQDEMMDKPTSSSVDTMSLLSK ddPTM_HeLa_CUDC101_4h_R1 1 SGTPTQDEMMDKPTSSSVDTMSLLSK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 S(0.46)GT(0.415)PT(0.107)QDEMMDKPT(0.007)S(0.007)S(0.003)S(0.001)VDTMSLLSK 63.277 0.0017727 17908000 2761 2742.4 1988.7 2111.3 2633.9 2156.8 2769.8 2874 2838.4 2638 TRUE FALSE FALSE 2437.359765 2826.890093 2096.215137 2197.40794 2439.602444 2115.662633 2876.632114 3201.164543 2721.399951 2622.309059 0.929470825 1.078015608 0.799377606 0.837966804 0.930326056 0.806793778 1.096984394 1.220742663 1.037787648 1 11.35662201 -4.552977009 6.388157524 0.941656234 1.192423848 0.52669375 0.090336001 0.086963733 11.18350486 0.01227307 0.049043329 2.80E-05 4.552977009 0.250767614 LGVSVS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 4 LGVSVSPSR 9 0 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 LGVS(0.021)VS(0.947)PS(0.031)R;LGVS(0.004)VS(0.995)PS(0.001)R;LGVS(0.085)VS(0.898)PS(0.016)R;LGVS(0.006)VS(0.968)PS(0.027)R ;;; 139.38 0.0019469 1920463000 14413.4 12267.5 11513.4 11331.8 12448.3 12395.5 12674.5 12365.5 12825.9 12616 TRUE FALSE FALSE 12723.8831 12645.44713 12135.84923 11793.95978 11530.01371 12159.07649 13163.35971 13773.13854 12297.21097 12540.95947 1.014586095 1.008331712 0.96769703 0.940435204 0.919388483 0.969549142 1.049629396 1.098252376 0.980563808 1 13.61436011 -4.550877605 3.865614763 0.991443371 1.090998456 0.592192317 0.031626765 0.1415236 4.463140934 0.005333445 0.026683193 2.81E-05 4.550877605 0.099555085 RDPSSNDINGGMEPTPSTVSTPSPS(ph)ADLLGLR ddPTM_HeLa_CUDC101_4h_R1 1 RDPSSNDINGGMEPTPSTVSTPSPSADLLGLR 32 1 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 1 0 RDPSSNDINGGMEPTPS(0.007)T(0.007)VS(0.046)T(0.046)PS(0.341)PS(0.553)ADLLGLR 122.82 5.75E-15 46294000 1039.3 652.35 718.92 737.54 794.23 766.69 929.78 992.22 879.46 742.6 TRUE FALSE FALSE 917.4748295 672.4481303 757.7869898 767.6200691 735.6412352 752.0666656 965.6419261 1105.170314 843.2082866 738.1829822 1.242882661 0.910950464 1.026557111 1.039877764 0.996556752 1.018807916 1.308133551 1.497149543 1.142275434 1 9.527834668 -4.550434236 3.336369854 1.077444606 1.476987947 0.720264985 0.090368385 0.126679049 2.773682971 0.016232119 0.09046175 2.82E-05 4.550434236 0.399543342 CIFMSETQS(ph)SPTK ddPTM_HeLa_CUDC101_4h_R1 1 CIFMSETQSSPTK 13 0 B4DGW0;A0A087WUY7;O75928-2;O75928 B4DGW0 PIAS2 E3 SUMO-protein ligase PIAS2 1 0 CIFMSETQS(0.821)S(0.179)PTK 225.55 7.15E-33 19123000 4229 3546.9 3639.1 3324.7 3953.4 4139.2 3297.4 2832.9 4541.7 3827.8 TRUE FALSE FALSE 3733.283031 3656.175785 3835.840754 3460.295637 3661.765558 4060.251656 3424.581823 3155.385885 4354.489204 3805.032075 0.981143643 0.960879097 1.008096825 0.90939986 0.962348145 1.067074226 0.900013917 0.829266567 1.144402759 1 11.8936929 -4.549661421 6.961807213 0.986211423 0.845873953 0.436922706 0.062979216 0.063116925 11.11271208 0.005072969 0.020025306 2.82E-05 4.549661421 -0.14033747 GPAST(ph)PTYS(ph)PAPTQPAPR ddPTM_HeLa_CUDC101_4h_R1 1 GPASTPTYSPAPTQPAPR 18 0 Q6P1N0;Q6P1N0-2;K7EJY5 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 2 0 GPAS(0.087)T(0.912)PT(0.395)Y(0.024)S(0.581)PAPTQPAPR 137.27 1.41E-05 0 2186.6 1920.1 1482.4 1839.7 1896.7 2022.4 1455.8 1091.7 1761.4 1906.8 TRUE FALSE FALSE 1930.290063 1979.256005 1562.543028 1914.730918 1756.78422 1983.82609 1511.950694 1215.974715 1688.794346 1895.458269 1.01837645 1.04420975 0.824361609 1.010167804 0.926838775 1.046620821 0.797670262 0.641520172 0.890968888 1 10.88833098 -4.549368484 3.175529432 0.994494202 0.654838686 0.670479276 0.07220599 0.084831752 1.649244279 0.008707629 0.050641293 2.82E-05 4.549368484 -0.339655516 ESS(ph)PPREEAPPPPPPTEDSCAK ddPTM_HeLa_CUDC101_4h_R1 1 ESSPPREEAPPPPPPTEDSCAK 22 1 C9JR56;Q9UPW6-2;Q9UPW6 C9JR56 SATB2 DNA-binding protein SATB;DNA-binding protein SATB2 1 0 ES(0.158)S(0.842)PPREEAPPPPPPTEDSCAK 80.142 0.00061062 6026600 1141 1066.9 1225.9 1178.9 942.77 1127.4 1210.2 1255.7 1160 1168.6 TRUE FALSE FALSE 1007.25371 1099.769924 1292.175862 1226.980638 873.2237354 1105.896723 1256.877819 1398.643812 1112.184309 1161.649115 0.867089465 0.946731599 1.112363316 1.056240324 0.751710412 0.952005824 1.081977168 1.204015734 0.957418462 1 10.18195864 -4.549096643 2.806349543 0.945221442 1.196519423 0.41702955 0.093481769 0.217587946 3.149896974 0.01417834 0.092051233 2.82E-05 4.549096643 0.251297981 GIGT(ph)PPNTTPIKNGS(ph)PEIK ddPTM_HeLa_CUDC101_4h_R1 1 GIGTPPNTTPIKNGSPEIK 19 1 O96028-3;O96028;O96028-6;D6RIS1;D6R9V2;O96028-7;O96028-5 O96028-3;O96028-5 WHSC1 Histone-lysine N-methyltransferase NSD2 2 0 GIGT(0.605)PPNT(0.198)T(0.198)PIKNGS(1)PEIK 64.013 0.036206 7181700 2081.8 2115 2212.2 1903.8 2372 1968.6 1854 1575.8 2491.9 2202.1 TRUE FALSE FALSE 1837.77456 2180.160643 2331.798224 1981.445193 2197.022286 1931.052235 1925.509401 1755.182702 2389.182827 2189.001811 0.839549127 0.995961096 1.065233574 0.905182071 1.003663987 0.882161095 0.879628967 0.801818753 1.091448538 1 11.09605743 -4.549024328 1.554015449 0.941607741 0.792629942 0.284728444 0.078600647 0.739306684 2.437635822 0.011385576 0.141468781 2.82E-05 4.549024328 -0.148977799 S(ph)PVTTLLECMHK ddPTM_HeLa_CUDC101_4h_R1 1 SPVTTLLECMHK 12 0 P55265-5;P55265;P55265-4;A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ITG9;A0A3B3ISX1 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 0 S(1)PVTTLLECMHK 201.06 1.22E-16 10465000 3660.6 2889.5 2304.2 3176.3 2486.8 2646 1889.3 1374 2941.6 1632.2 TRUE FALSE FALSE 3231.510017 2978.52207 2428.772022 3305.843243 2303.353718 2595.531959 1962.170934 1530.410606 2820.346003 1622.491602 1.99169599 1.835770408 1.496939657 2.037510234 1.41963984 1.599719811 1.209356604 0.943247167 1.738280802 1 10.6639953 -4.546286908 2.698995995 1.55081854 0.948590947 0.350930216 0.296414453 0.390448969 5.142233728 0.057681335 0.391423079 2.84E-05 4.546286908 -0.602227593 LLAQAEGEPCY(ph)IR ddPTM_HeLa_CUDC101_4h_R1 2 LLAQAEGEPCYIR 13 0 H0YE41;E9PPF2;E9PM19;P29597 H0YE41 TYK2 Tyrosine-protein kinase;Non-receptor tyrosine-protein kinase TYK2 1 0 LLAQAEGEPCY(1)IR;LLAQAEGEPCY(1)IR ; 168.85 3.24E-06 23065000 7066 5746.9 4565.8 4863.6 5948.1 6323.7 6943.3 7677.8 5126 4956.1 TRUE FALSE FALSE 6237.734191 5923.955177 4812.640959 5061.95863 5509.320513 6203.085959 7211.105407 8551.809717 4914.70411 4926.620897 1.26612831 1.202437797 0.97686448 1.027470702 1.118275717 1.259095451 1.463702111 1.735836773 0.997581144 1 12.26638275 -4.546016301 1.47334174 1.114624484 1.814138973 0.837200784 0.093021579 0.26222487 0.749118053 0.017187302 0.228470122 2.84E-05 4.546016301 0.699514489 NQGGYGGS(ph)SSSSSYGSGR ddPTM_HeLa_CUDC101_4h_R1 2 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-3;P09651-2;P09651;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 NQGGY(0.004)GGS(0.312)S(0.312)S(0.312)S(0.026)S(0.026)S(0.008)YGSGR;NQGGYGGS(0.461)S(0.461)S(0.025)S(0.043)S(0.01)SYGSGR ; 119.68 9.30E-05 151239000 2715 2558.5 2886.3 2626.88 2836.9 2474.8 2956.4 3032.6 2782.9 3057.8 TRUE FALSE FALSE 2396.751816 2637.324352 3042.342109 2734.015521 2627.627539 2427.597313 3070.429338 3377.818926 2668.187684 3039.61207 0.788505823 0.867651625 1.000898154 0.89946199 0.864461477 0.798653663 1.010138553 1.111266454 0.877805333 1 11.5696715 -4.54573274 5.732199238 0.894963541 1.089380034 0.534660233 0.067412813 0.113959675 11.68399383 0.012341523 0.051598332 2.85E-05 4.54573274 0.194416493 SIYDDISSPGLGS(ph)TPLTSR ddPTM_HeLa_CUDC101_4h_R1 2 SIYDDISSPGLGSTPLTSR 19 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 SIYDDISSPGLGS(0.929)T(0.071)PLTSR;SIYDDIS(0.004)S(0.037)PGLGS(0.871)T(0.088)PLTSR ; 197.7 5.99E-17 75526000 4617.5 3416.8 3341.1 3530.9 4494.4 4989.5 5483.2 6306 3797.4 4305.8 TRUE FALSE FALSE 4076.24365 3522.067558 3521.729972 3674.905364 4162.857066 4894.333601 5694.688861 7023.84955 3640.869565 4280.18891 0.952351341 0.822876661 0.822797789 0.858584852 0.972587228 1.143485417 1.330476056 1.641013913 0.850632914 1 12.06345876 -4.544547464 1.311148841 0.942976343 1.749857267 0.916178061 0.072854351 0.199587481 0.418795468 0.012335705 0.186295629 2.85E-05 4.544547464 0.806880925 ALS(ph)DREEEEEDDEEEEEEVEAAAQR ddPTM_HeLa_CUDC101_4h_R1 2 ALSDREEEEEDDEEEEEEVEAAAQR 25 1 Q8N3E9 Q8N3E9 PLCD3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3" 1 0 ALS(1)DREEEEEDDEEEEEEVEAAAQR;ALS(1)DREEEEEDDEEEEEEVEAAAQR ; 104.3 8.16E-07 30166000 3387.6 2944.1 2478.5 2813.1 3556.8 2790.5 2479 1984.99 2883.4 2860.3 TRUE FALSE FALSE 2990.510663 3034.804231 2612.495207 2927.830377 3294.42195 2737.275862 2574.61586 2210.953238 2764.545032 2843.286808 1.05177946 1.067357757 0.918829293 1.02973445 1.158666773 0.962715352 0.905506913 0.777604718 0.972306073 1 11.47334392 -4.544334819 1.948067918 1.028423839 0.769476132 0.617894297 0.06119151 0.215255626 1.268042034 0.008365684 0.081187702 2.86E-05 4.544334819 -0.258947707 SGSIVELIAGGGSSCS(ph)PVLSR ddPTM_HeLa_CUDC101_4h_R1 2 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 1 0 S(0.001)GSIVELIAGGGS(0.016)S(0.228)CS(0.754)PVLSR;S(0.004)GS(0.001)IVELIAGGGSS(0.003)CS(0.992)PVLSR ; 144.75 4.95E-07 217450000 7534.3 4986.2 4603.7 5386.5 6960.7 5370.9 4278.6 3125.4 5499.7 4420 TRUE FALSE FALSE 6651.140775 5139.818912 4852.589947 5606.184752 6447.223029 5268.459031 4443.627035 3481.182903 5273.000038 4393.709643 1.513787054 1.169813058 1.104440289 1.27595704 1.46737576 1.199091305 1.011361104 0.792310641 1.20012483 1 12.10122382 -4.544230138 2.351871643 1.249388656 0.79072651 0.496353832 0.145527537 0.311329208 2.935226241 0.028780336 0.226113222 2.86E-05 4.544230138 -0.458662146 S(ph)PSFASEWDEIEK ddPTM_HeLa_CUDC101_4h_R1 3 SPSFASEWDEIEK 13 0 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.862)PS(0.138)FASEWDEIEK;S(0.961)PS(0.039)FASEWDEIEK;S(0.89)PS(0.11)FASEWDEIEK ;; 242.8 1.69E-44 152760000 6016.7 5542.8 5369.4 5646 5806.1 5472.8 5357.1 5007.03 5925.67 5695.6 TRUE FALSE FALSE 5311.431547 5713.567098 5659.686006 5876.268284 5377.79557 5368.415458 5563.725142 5577.010056 5681.411374 5661.722318 0.938129998 1.009157069 0.999640337 1.037894117 0.949851524 0.948194764 0.982691278 0.985037722 1.003477574 1 12.46702528 -4.544223603 24.95561302 0.976689356 0.984451193 0 0.030995639 1381.233539 1614886.969 0.004821674 0.018042385 2.86E-05 4.544223603 0.007761838 LNEAQPSTIATSMRDSLIDS(ph)LT ddPTM_HeLa_CUDC101_4h_R1 1 LNEAQPSTIATSMRDSLIDSLT 22 1 P56537-2;P56537 P56537-2 EIF6 Eukaryotic translation initiation factor 6 1 0 LNEAQPSTIAT(0.018)S(0.013)MRDS(0.252)LIDS(0.665)LT(0.052) 70.771 0.001819 8729800 2709.2 2660.6 2100.9 2308.1 2684.6 2269.8 1955.1 1553.3 2305.8 2425.3 TRUE FALSE FALSE 2391.631683 2742.569932 2214.481009 2402.234294 2486.562406 2226.507347 2030.508862 1730.121393 2210.753948 2410.874208 0.992018445 1.137583174 0.918538596 0.996416274 1.031394503 0.923526968 0.842229286 0.717632379 0.916992658 1 11.23534066 -4.54375921 1.379538091 1.003569853 0.675338044 0.700074864 0.059127859 0.265895961 0.637250688 0.007271945 0.104402922 2.86E-05 4.54375921 -0.328231809 ATS(ph)TATSGFAGAIGQK ddPTM_HeLa_CUDC101_4h_R1 2 ATSTATSGFAGAIGQK 16 0 A0A2R8YD50;P51659-3;P51659;P51659-2;E7ER27;E7EPL9;A0A2R8Y7L2;E7ET17 A0A2R8YD50 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 1 0 ATS(0.493)T(0.493)AT(0.013)SGFAGAIGQK;AT(0.003)S(0.943)T(0.054)ATSGFAGAIGQK ; 351.2 7.45E-218 41599000 7507.4 6681.2 6240.9 6503 6886.1 7089 7224.6 7312.6 6043.1 7061.5 TRUE FALSE FALSE 6627.393952 6887.039853 6578.301932 6768.220448 6378.126122 6953.789136 7503.255242 8145.036825 5794.00086 7019.497884 0.944140744 0.981129985 0.937147078 0.964202933 0.908629966 0.99063911 1.068916234 1.160344651 0.825415287 1 12.77715212 -4.543030616 2.130772673 0.965923646 1.165733583 0.645080745 0.050994654 0.123905347 0.914061163 0.004282088 0.037638308 2.86E-05 4.543030616 0.199809937 ETES(ph)APGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 ETESAPGSPR 10 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 2 0 ET(0.066)ES(0.934)APGS(1)PR 126.34 0.031611 296280000 18605 15399 15703 14254 16137 16554 15897 15428 15532 15782 TRUE FALSE FALSE 16424.1501 15873.42494 16551.95168 14835.33973 14946.60566 16238.26003 16510.15262 17184.26116 14891.76439 15688.12796 1.046915868 1.011811287 1.055062256 0.945641173 0.952733538 1.035066776 1.05239788 1.095367223 0.94923782 1 13.93738559 -4.54278015 2.214419469 1.01426843 1.095259629 0.338219138 0.039959324 0.3625133 2.942785219 0.005389425 0.045400586 2.87E-05 4.54278015 0.080991199 GLPLGSAVS(ph)SPVLFS(ph)PVGR ddPTM_HeLa_CUDC101_4h_R1 1 GLPLGSAVSSPVLFSPVGR 19 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 2 0 GLPLGS(0.001)AVS(0.5)S(0.5)PVLFS(1)PVGR 134.33 0.00042767 16163000 1637.5 1160.8 1088.2 1239.5 1463.4 980.05 846.25 454.98 1255 1703.1 TRUE FALSE FALSE 1445.554732 1196.562872 1147.031384 1290.052168 1355.447898 961.3571791 878.890146 506.7730841 1203.268369 1692.969885 0.853857322 0.706783318 0.677526159 0.762005384 0.8006332 0.567852498 0.519141039 0.299339692 0.710744107 1 10.7253406 -4.542751205 0.244626937 1.007782015 1.84E-17 0.606124208 0.115376711 2.651384241 0.144876401 0.066997279 0.805560531 2.87E-05 4.542751205 -1.007782015 QHDYS(ph)DYEDSSLEFLER ddPTM_HeLa_CUDC101_4h_R1 1 QHDYSDYEDSSLEFLER 17 0 A8MW92;A0A0A0MQS0;F8W9L8 A8MW92 PHF20L1 PHD finger protein 20-like protein 1 1 0 QHDY(0.038)S(0.952)DY(0.01)EDSSLEFLER 83.064 0.0067469 2156600 673.83 672.73 541.72 539.82 587.04 684.53 417.85 266.25 713.04 586.49 TRUE FALSE FALSE 594.8446689 693.4560139 571.0070218 561.8361929 543.7352287 671.4737308 433.9666145 296.5588238 683.6481894 583.0015314 1.020314076 1.189458306 0.979426281 0.963695913 0.932648028 1.151752945 0.744366166 0.508675892 1.172635324 1 9.187355863 -4.542562275 3.923594273 1.018991759 0.542906471 0.778826938 0.092970821 0.058486594 1.943910979 0.010611431 0.053692302 2.87E-05 4.542562275 -0.476085288 SLS(ph)PPQSQSK ddPTM_HeLa_CUDC101_4h_R1 2 SLSPPQSQSK 10 0 Q9UQB8;Q9UQB8-2;Q9UQB8-6;Q9UQB8-4;Q9UQB8-5;Q9UQB8-3;I3L4C2;B4DWA1;I3L3C6;I3L0Y9 Q9UQB8 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 0 S(0.004)LS(0.968)PPQS(0.012)QS(0.017)K;S(0.003)LS(0.997)PPQSQSK ; 110.64 0.0081427 20518000 6776.9 6181.9 6078.7 5899 6468.1 6427 5253.2 4521.7 5005.8 5554.9 TRUE FALSE FALSE 5982.522055 6372.357012 6407.332909 6139.586718 5990.961149 6304.415683 5455.817684 5036.432051 4799.458805 5521.859208 1.083425316 1.154023812 1.160357892 1.111869478 1.084953622 1.141719744 0.988039984 0.912089907 0.869174426 1 12.43093839 -4.541786894 5.651927455 1.07095601 0.928317273 0.288901457 0.082464444 0.118915626 12.14142458 0.009439037 0.04006 2.87E-05 4.541786894 -0.142638737 SVSCS(ph)DEDEKPR ddPTM_HeLa_CUDC101_4h_R1 1 SVSCSDEDEKPR 12 1 E9PMC9;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7;Q7Z589-2 E9PMC9 C11orf30;EMSY Protein EMSY 1 0 SVSCS(1)DEDEKPR 141.73 0.0059705 4028200 1534.7 1470.4 1355.1 1416 1537 1313.1 1478.8 1424.2 1420.9 1500.6 TRUE FALSE FALSE 1354.804792 1515.701281 1428.360805 1473.7506 1423.618572 1288.054805 1535.837811 1586.325171 1362.329901 1491.674364 0.908244336 1.016107347 0.957555375 0.987984131 0.954376241 0.863495972 1.029606627 1.063452727 0.913289075 1 10.54271691 -4.541189971 24.98026192 0.956828974 1.054991258 0.436298576 0.044038263 149.8821971 204469.9698 0.006442346 0.024113503 2.88E-05 4.541189971 0.098162284 SSSFS(ph)LPSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSFSLPSR 9 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 0 S(0.002)S(0.001)S(0.311)FS(0.686)LPSR 120.45 0.0055893 35060000 2853.3 2336.9 1913.6 2167.6 2389.4 2453.8 2557.6 2552.5 3040 2583.7 TRUE FALSE FALSE 2518.840499 2408.897119 2017.055004 2256.004097 2213.138722 2406.997853 2656.247489 2843.066282 2914.689913 2568.332037 0.980730086 0.937922778 0.785356011 0.878392694 0.861702728 0.937183284 1.034230563 1.106969909 1.134857125 1 11.32661601 -4.540691761 3.222137709 0.952233973 1.100142898 0.266381456 0.088688378 0.258184016 5.198653569 0.011593155 0.068066137 2.88E-05 4.540691761 0.147908925 SSS(ph)TGNLLDKDDLAIPPPDYGAASR ddPTM_HeLa_CUDC101_4h_R1 2 SSSTGNLLDKDDLAIPPPDYGAASR 25 1 Q9UQB8;Q9UQB8-2;Q9UQB8-6;Q9UQB8-4;Q9UQB8-5;Q9UQB8-3;I3L4C2;B4DWA1;I3L3C6 Q9UQB8 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 0 S(0.181)S(0.181)S(0.588)T(0.05)GNLLDKDDLAIPPPDYGAASR;S(0.144)S(0.144)S(0.539)T(0.174)GNLLDKDDLAIPPPDYGAASR ; 96.61 4.10E-06 301050000 8084.6 8064.8 7302.2 8505.6 9106 8708 6881.4 5880.5 7828.9 7949.1 TRUE FALSE FALSE 7136.935443 8313.266929 7696.97902 8852.495132 8434.268522 8541.909409 7146.817903 6549.91235 7506.189428 7901.8184 0.903201653 1.052070107 0.974076931 1.120311134 1.06738324 1.081005533 0.90445231 0.828912033 0.949931908 1 12.94796898 -4.539564722 10.02560772 0.988671242 0.847603607 0.414531144 0.067503256 0.222732797 128.9686405 0.011172487 0.04293357 2.89E-05 4.539564722 -0.141067635 KVDLTLLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 KVDLTLLSPK 10 1 E7EVA0;P27816-4;B5MEG9 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 KVDLT(0.001)LLS(0.999)PK 105.65 0.020702 94238000 2011.8 1677.7 1307.9 1872.5 1888.8 1559.8 1333.7 974.21 1368.2 1742.7 TRUE FALSE FALSE 1775.979854 1729.387948 1378.60903 1948.868644 1749.466987 1530.049414 1385.141256 1085.110129 1311.802217 1732.334343 1.025194623 0.998299177 0.795810021 1.124995675 1.009889918 0.883229857 0.799580786 0.626386086 0.757245403 1 10.75850168 -4.538916676 1.313821073 1.003116737 0.567768196 0.43074958 0.110489689 0.33908123 0.710907677 0.011204121 0.171443187 2.89E-05 4.538916676 -0.435348541 MS(ph)RVS(ph)LQGQEPNVILEAR ddPTM_HeLa_CUDC101_4h_R1 1 MSRVSLQGQEPNVILEAR 18 1 Q8N7S2-2 Q8N7S2-2 DNAJC5G DnaJ homolog subfamily C member 5G 2 0 MS(1)RVS(1)LQGQEPNVILEAR 65.416 0.031395 8202700 1945.7 1346.7 1625.3 1522.6 1349.1 1585.5 1630.2 1625.8 1899 1506.6 TRUE FALSE FALSE 1717.627995 1388.190231 1713.168634 1584.698209 1249.579581 1555.259229 1693.07736 1810.8745 1820.722416 1497.638676 1.146890784 0.926919325 1.143913189 1.0581312 0.834366527 1.038474269 1.130497888 1.209153135 1.215728764 1 10.54847388 -4.538792768 3.257496611 1.046875766 1.201109876 0.199972379 0.104945266 0.290539883 6.008167584 0.013740186 0.080346807 2.89E-05 4.538792768 0.15423411 LVSPGS(ph)ANETSSILVESVTR ddPTM_HeLa_CUDC101_4h_R1 2 LVSPGSANETSSILVESVTR 20 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 0 LVS(0.002)PGS(0.998)ANETSSILVESVTR;LVSPGS(0.998)ANET(0.001)S(0.001)SILVESVTR ; 151.64 1.58E-05 29323000 2290.3 1683.97 1715.46 1884.6 2261.48 1799.8 2208.38 2340.84 2389.92 1913.72 TRUE FALSE FALSE 2021.834506 1735.85112 1808.202957 1961.462134 2094.655126 1765.471814 2293.557956 2607.311764 2291.406486 1902.337108 1.0628161 0.912483446 0.950516577 1.031080204 1.101095656 0.928054132 1.205652745 1.370583453 1.204521783 1 10.89355721 -4.538635271 3.776086508 1.01619662 1.348709896 0.637448498 0.083665044 0.069917904 2.107185599 0.008441456 0.044265492 2.89E-05 4.538635271 0.332513277 NLES(ph)PEKHLQN ddPTM_HeLa_CUDC101_4h_R1 1 NLESPEKHLQN 11 1 P26374 P26374 CHML Rab proteins geranylgeranyltransferase component A 2 1 0 NLES(1)PEKHLQN 108.35 0.037323 18395000 2271.6 2620 2219.1 2162.5 2932.7 2126.8 1792.5 1217 2446.3 2650.3 TRUE FALSE FALSE 2005.326492 2700.719095 2339.071258 2250.696097 2716.360564 2086.234833 1861.637325 1355.538361 2345.462479 2634.535898 0.761168786 1.025121387 0.887849454 0.854304585 1.031058475 0.791879448 0.706628187 0.514526434 0.890275392 1 11.36333312 -4.538307886 1.68672254 0.900978275 0.485039267 0.701840148 0.083394396 0.309073872 1.247626955 0.014937949 0.174202366 2.90E-05 4.538307886 -0.415939009 YSGLTAS(ph)SK ddPTM_HeLa_CUDC101_4h_R1 2 YSGLTASSK 9 0 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 0 YSGLT(0.009)AS(0.952)S(0.038)K;YSGLT(0.001)AS(0.985)S(0.014)K ; 101.39 0.016436 19662100 4142.6 3241.6 3103.2 3113.4 3236.5 3185.5 2746.4 1300.56 2978.8 2994.9 TRUE FALSE FALSE 3657.010708 3341.469854 3270.968379 3240.377909 2997.749843 3124.741895 2852.329568 1448.610493 2856.012603 2977.086202 1.228385898 1.12239607 1.098714702 1.088439397 1.006940895 1.049597386 0.958094383 0.486586681 0.959331511 1 11.53968528 -4.059656772 1.462558382 1.102421543 1.26E-15 0.837833214 0.075790774 0.604636414 0.802691207 0.012928178 1.109551148 8.72E-05 4.059656772 -1.102421543 down HRGS(ph)ADYSMEAK ddPTM_HeLa_CUDC101_4h_R1 3 HRGSADYSMEAK 12 1 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 HRGS(0.997)ADYS(0.003)MEAK;HRGS(0.999)ADYS(0.001)MEAK;HRGS(0.996)ADYS(0.004)MEAK ;; 77.726 0.022428 121378900 12953.7 9814.8 10761.5 9441.5 11723 10131.9 12009.7 12229.8 11671.4 12024.7 TRUE FALSE FALSE 11435.28692 10117.18235 11343.29924 9826.56518 10858.21765 9938.650888 12472.91815 13621.991 11190.29995 11953.17655 0.956673473 0.846401148 0.948977805 0.822088182 0.90839599 0.831465247 1.043481463 1.139612633 0.936177919 1 13.54510644 -4.537945127 8.956364135 0.94293144 1.116056053 0.536775946 0.064517203 0.1131008 58.3946874 0.010390177 0.040514112 2.90E-05 4.537945127 0.173124613 DVMSDETNNEETESPS(ph)QEFVNITK ddPTM_HeLa_CUDC101_4h_R1 1 DVMSDETNNEETESPSQEFVNITK 24 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DVMSDETNNEET(0.008)ES(0.374)PS(0.617)QEFVNITK 113.08 3.24E-07 10688000 2983.5 2310.2 2716.1 2554.4 3151.4 2642.1 3009.2 3112.9 2872.7 2845.7 TRUE FALSE FALSE 2633.778653 2381.374524 2862.940582 2658.579473 2918.9275 2591.706345 3125.265852 3467.259953 2754.28609 2828.77365 0.931067303 0.841839899 1.012078355 0.939834643 1.031870295 0.916194318 1.104812982 1.225711344 0.973667897 1 11.46596103 -4.537295455 3.185056344 0.960933602 1.216285114 0.731739489 0.052855996 0.098812731 1.932876917 0.007515028 0.044931567 2.90E-05 4.537295455 0.255351513 SGGGLHSVAEGVRLS(ph)PEPGR ddPTM_HeLa_CUDC101_4h_R1 2 SGGGLHSVAEGVRLSPEPGR 20 1 Q9NWK9-2;Q9NWK9 Q9NWK9-2 ZNHIT6 Box C/D snoRNA protein 1 1 0 SGGGLHSVAEGVRLS(1)PEPGR;SGGGLHSVAEGVRLS(1)PEPGR ; 77.1 0.0029604 172376000 5168.8 3658.5 2917 2699.3 5848.5 4462.3 3854.2 3759.1 4106.5 4174.9 TRUE FALSE FALSE 4562.921099 3771.214049 3074.701843 2809.389121 5417.067807 4377.189062 4002.857785 4187.020749 3937.228332 4150.067509 1.099481175 0.908711495 0.740879958 0.676950222 1.30529631 1.054727195 0.964528354 1.00890425 0.948714286 1 12.01891909 -4.537002609 0.007256513 1.963166643 2.62E-07 0 0.172353454 58531.17001 73.48292932 9477.750243 10418.86774 2.90E-05 4.537002609 -1.963166381 THAVSVSETDDY(ph)AEIIDEEDTYTMPSTR ddPTM_HeLa_CUDC101_4h_R1 1 THAVSVSETDDYAEIIDEEDTYTMPSTR 28 0 Q05397-5;Q05397;Q05397-7;Q05397-2;E7ESA6;H0YBP1;Q05397-3;Q05397-4;H0YB33;H0YB99 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 THAVSVSET(0.003)DDY(0.997)AEIIDEEDTYTMPSTR 151.42 2.95E-15 7330700 740.81 729.02 687.29 604.27 908.51 803.09 593.48 470.71 897.1 743.08 TRUE FALSE FALSE 653.9733748 751.4802421 724.4469763 628.9147425 841.4910273 787.7723963 616.3707224 524.2937237 860.1211583 738.6601271 0.885350855 1.017355905 0.9807582 0.851426413 1.13921274 1.066488318 0.834444286 0.709790206 1.16443426 1 9.528766893 -4.536409818 5.011565201 0.965884459 0.734037269 0.440592091 0.102020787 0.104829846 7.369196578 0.012013766 0.054255767 2.91E-05 4.536409818 -0.231847191 TLSSS(ph)SMDLSR ddPTM_HeLa_CUDC101_4h_R1 3 TLSSSSMDLSR 11 0 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 0 TLSS(0.013)S(0.611)S(0.376)MDLSR;TLS(0.001)S(0.236)S(0.527)S(0.236)MDLSR;TLS(0.001)S(0.249)S(0.502)S(0.249)MDLSR ;; 210.44 1.76E-23 293306000 12608.4 8512.5 9584.4 8377 9734.3 10431.4 10954.6 11478.4 7738.4 9287.5 TRUE FALSE FALSE 11130.46247 8774.760035 10102.56166 8718.650268 9016.220082 10232.43842 11377.12259 12785.05466 7419.419877 9232.257537 1.205605717 0.95044576 1.094267747 0.944368182 0.976599715 1.108335462 1.232322923 1.384824308 0.803640913 1 13.17246775 -4.535743844 2.162798838 1.068439071 1.392993419 0.490246783 0.115247647 0.252685245 1.921486645 0.014314688 0.126187394 2.91E-05 4.535743844 0.324554348 LDVTILS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 2 LDVTILSPSR 10 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 1 0 LDVTILS(0.993)PS(0.007)R;LDVTILS(0.606)PS(0.394)R ; 142.76 0.00099023 92159000 6024.3 5052.8 4331.2 4824.9 5996 5576.5 3857.1 2646.9 5311.1 5228 TRUE FALSE FALSE 5318.140686 5208.470779 4565.357773 5021.680277 5553.687026 5470.137554 4005.869639 2948.212397 5092.17421 5196.903623 1.023328711 1.002225778 0.878476513 0.966283126 1.068653073 1.052576293 0.770818535 0.567301726 0.979847728 1 12.34343659 -4.535366611 3.047221469 1.004174814 0.580822926 0.874222045 0.052172666 0.064021026 1.123225546 0.007627627 0.047581246 2.91E-05 4.535366611 -0.423351888 SKELVSSSSSGSDS(ph)DSEVDKK ddPTM_HeLa_CUDC101_4h_R1 2 SKELVSSSSSGSDSDSEVDKK 21 2 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 SKELVSSSSSGS(0.017)DS(0.982)DS(0.001)EVDKK;SKELVSSSSSGS(0.021)DS(0.978)DS(0.001)EVDKK ; 112.06 1.68E-05 18022000 3211.8 3368.2 3808.4 3439.5 3416.8 2770.02 2423.91 1500.78 3623.7 4212.4 TRUE FALSE FALSE 2835.317673 3471.97025 4014.293624 3579.777677 3164.749471 2717.186484 2517.401021 1671.622729 3474.329552 4187.344457 0.677115939 0.829158022 0.958672893 0.854904036 0.755789141 0.648904458 0.601192724 0.399208316 0.829721459 1 12.03181989 -4.055260827 0.637619394 0.85684552 5.06E-12 0.751949839 0.084834152 2.178522432 0.508380477 0.022290292 1.441096696 8.81E-05 4.055260827 -0.85684552 down YFEADPPGQVAAS(ph)PDPTT ddPTM_HeLa_CUDC101_4h_R1 4 YFEADPPGQVAASPDPTT 18 0 H0Y8X4;O43598 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 1 0 YFEADPPGQVAAS(1)PDPTT;YFEADPPGQVAAS(1)PDPTT;YFEADPPGQVAAS(0.98)PDPT(0.01)T(0.01);YFEADPPGQVAAS(0.98)PDPT(0.01)T(0.01) ;;; 215.49 1.70E-24 133497300 23713 21757.3 21168.8 19951.7 24196.5 21525 21806.1 20778.5 22729.8 23126 TRUE FALSE FALSE 20933.39809 22427.61662 22313.24936 20765.41656 22411.5724 21114.44649 22647.16858 23143.84045 21792.86802 22988.44552 0.910605202 0.975603879 0.97062889 0.903297987 0.974905953 0.918480828 0.985154414 1.006759697 0.947992242 1 14.48862129 -4.534587026 23.92110526 0.954270998 1.001358397 0.273432967 0.030156422 140.9053872 287884.3623 0.005175704 0.019404268 2.92E-05 4.534587026 0.047087398 ATGAALTPT(ph)EER ddPTM_HeLa_CUDC101_4h_R1 1 ATGAALTPTEER 12 0 M0R0P8;Q13459-2;Q13459;M0R300 M0R0P8 MYO9B Unconventional myosin-IXb 1 0 ATGAALT(0.086)PT(0.914)EER 118.52 0.017526 7175000 2026.2 1563 1393.2 1843.7 2030.4 1761.6 1891.6 1875.8 1734.2 2011.1 TRUE FALSE FALSE 1788.691908 1611.154177 1468.520606 1918.894055 1880.621437 1728.000415 1964.559646 2089.33349 1662.715542 1999.137888 0.894731633 0.805924487 0.734576947 0.959860781 0.94071622 0.864372801 0.982703423 1.045117249 0.831716287 1 10.96516227 -4.534040945 5.285919643 0.91893114 1.032509045 0.212983781 0.081770024 0.211889038 18.11495632 0.012573292 0.055983728 2.92E-05 4.534040945 0.113577905 GNVFSS(ph)PTAAGTPNK ddPTM_HeLa_CUDC101_4h_R1 1 GNVFSSPTAAGTPNK 15 0 E9PGZ1;Q05682-5;Q05682-4;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682 E9PGZ1;E7EX44;Q05682 CALD1 Caldesmon 1 0 GNVFS(0.018)S(0.935)PT(0.046)AAGT(0.002)PNK 160.65 6.11E-05 28623000 8845.5 7461 7179.6 6732.6 7684.2 7516.8 5397.7 2499.8 9733.1 9763.3 TRUE FALSE FALSE 7808.643899 7690.864567 7567.750893 7007.184529 7117.351875 7373.429564 5605.891097 2784.367127 9331.897498 9705.227457 0.804581236 0.792445576 0.779760281 0.722001062 0.733352403 0.759737945 0.577615633 0.286893547 0.961533106 1 13.24454631 -4.054802866 0.244296308 0.973369637 8.19E-29 0.809334315 0.082569978 4.174946189 0.184993903 0.066028484 1.251975423 8.81E-05 4.054802866 -0.973369637 down LRLCDDGPQLPTS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 LRLCDDGPQLPTSPR 15 1 O60504-2;O60504;H0YAZ3;H0YB51 O60504-2 SORBS3 Vinexin 1 0 LRLCDDGPQLPT(0.147)S(0.853)PR;LRLCDDGPQLPT(0.137)S(0.863)PR ; 99.915 0.0033042 44918000 2859.1 3135.9 2849.9 3094 5102.5 4214 4281.4 4921.8 4175.8 1856.39 TRUE FALSE FALSE 2523.960632 3232.513362 3003.974214 3220.186693 4726.098741 4133.624971 4446.535032 5482.077817 4003.671757 1845.34811 1.367742281 1.751709255 1.627863165 1.745029394 2.561087914 2.240024497 2.409591453 2.970755376 2.169602437 1 10.84967728 -4.533395859 0.237982217 0.897737354 4.269563065 0.478491706 0.406834982 1.759358911 0.091923114 0.150091409 1.74821472 2.93E-05 4.533395859 3.371825711 NVTDT(ph)DILALERRLLQT(ph)MDMIIS(ph)KK ddPTM_HeLa_CUDC101_4h_R1 1 NVTDTDILALERRLLQTMDMIISKK 25 3 A0A087WW78;A0A087WW82;U3KPV2;E9PKY3;B7ZAQ6-2;B7ZAQ6-3;P0CG08;B7ZAQ6 A0A087WW78 GPR89B;GPR89A Golgi pH regulator A;Golgi pH regulator B 3 0 NVT(0.041)DT(0.962)DILALERRLLQT(0.998)MDMIIS(1)KK 45.784 0.0025091 0 2357.9 1862.4 2309 2143.6 2390.7 1900.7 2454.4 2482.6 2179.8 2552.5 TRUE FALSE FALSE 2081.510536 1919.778337 2433.831524 2231.025273 2214.342824 1864.447314 2549.06703 2765.209149 2089.947721 2537.317616 0.820358682 0.756617273 0.959214372 0.879284981 0.872710145 0.734810377 1.004630644 1.089815926 0.82368392 1 11.30908841 -4.533167213 24.91800899 0.889338535 1.068519666 0.43521362 0.082778218 146.1737496 354024.4655 0.013298078 0.049867232 2.93E-05 4.533167213 0.179181132 APSSSS(ph)LNSATSSQSK ddPTM_HeLa_CUDC101_4h_R1 1 APSSSSLNSATSSQSK 16 0 Q5F1R6;Q5F1R6-3;Q5F1R6-2;A0A2R8Y534;A0A2R8Y4Q0 Q5F1R6 DNAJC21 DnaJ homolog subfamily C member 21 1 0 APSSS(0.003)S(0.476)LNS(0.476)AT(0.041)S(0.004)SQSK 189.33 4.29E-11 7141800 2043.9 1561.4 1698.7 1939.2 2069.3 1960.1 1616.2 1388.5 1732.5 1795.8 TRUE FALSE FALSE 1804.31714 1609.504883 1790.53686 2018.288958 1916.651862 1922.714358 1678.537375 1546.561227 1661.085617 1785.118502 1.010754826 0.901623551 1.003035293 1.130619035 1.073683265 1.077079396 0.940294649 0.86636334 0.930518403 1 10.80180413 -4.5326057 5.109584719 1.015397079 0.880869767 0.354561095 0.06429637 0.127006381 9.696227871 0.008586093 0.038934333 2.93E-05 4.5326057 -0.134527311 IIIEELSLVAASPTLS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 IIIEELSLVAASPTLSPR 18 0 Q16513-3;Q16513-2;Q16513;Q16513-4;B1AL79;H0Y5V5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 IIIEELS(0.06)LVAAS(0.39)PT(0.071)LS(0.479)PR 234.36 1.00E-43 181480000 761.01 711.51 751.63 650.95 724.56 688.67 558.89 473.54 659.82 742.23 TRUE FALSE FALSE 671.8055614 733.4307798 792.2653914 677.4985546 671.1106523 675.5347672 580.4465745 527.4458795 632.6219403 737.815183 0.910533663 0.994057586 1.073799252 0.918249679 0.909591816 0.915588053 0.786709989 0.71487534 0.857426026 1 9.527115667 -4.531832901 1.025112431 0.966128526 0.63907746 0.669007584 0.056981879 0.494822032 0.539744694 0.008118657 0.15852042 2.94E-05 4.531832901 -0.327051065 RSS(ph)ENLSLDDCNK ddPTM_HeLa_CUDC101_4h_R1 1 RSSENLSLDDCNK 13 1 Q96T17;Q96T17-2;Q96T17-5;Q96T17-4 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 RS(0.067)S(0.723)ENLS(0.21)LDDCNK 93.243 0.0012275 0 2650.4 2317.2 2186.2 2262.2 2133.4 2299.5 1659.5 1231.2 2347.9 1809.3 TRUE FALSE FALSE 2339.72413 2388.590185 2304.392585 2354.462294 1976.023332 2255.640869 1723.507471 1371.354831 2251.118568 1798.538203 1.300903214 1.328073088 1.281258625 1.309097738 1.098682991 1.254152325 0.958282381 0.762483015 1.251637894 1 10.81260909 -4.531457148 3.190698911 1.182881506 0.777311074 0.655743788 0.106595209 0.166464619 3.264872517 0.019958419 0.120971036 2.94E-05 4.531457148 -0.405570432 AEADKIYSFTDNAPS(ph)PSIGGSSR ddPTM_HeLa_CUDC101_4h_R1 2 AEADKIYSFTDNAPSPSIGGSSR 23 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 AEADKIYSFTDNAPS(0.961)PS(0.039)IGGSSR;AEADKIYSFT(0.001)DNAPS(0.837)PS(0.158)IGGS(0.003)S(0.001)R ; 121.26 1.65E-07 105663000 5575.1 5258.9 5086.3 4478.5 5510.7 4895.4 5590.4 5823.4 6212.2 5128.1 TRUE FALSE FALSE 4921.595229 5420.920476 5361.280763 4661.152588 5104.18664 4802.028401 5806.023601 6486.312317 5956.130487 5097.597833 0.965473423 1.063426471 1.051726899 0.914382174 1.001292532 0.942017899 1.138972471 1.272425273 1.168419064 1 12.31560184 -4.531220055 3.221880304 0.988111764 1.261681322 0.544244077 0.071964206 0.074843797 1.503626451 0.006120876 0.036828502 2.94E-05 4.531220055 0.273569558 ITS(ph)PNIR ddPTM_HeLa_CUDC101_4h_R1 1 ITSPNIR 7 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 IT(0.015)S(0.985)PNIR 89.029 0.034536 15487000 1385.2 1493.4 1225.1 1673.4 1425.3 1387 1040.3 743.14 1659.2 1557.9 TRUE FALSE FALSE 1222.828956 1539.409884 1291.332612 1741.648485 1320.158459 1360.545286 1080.424719 827.7360537 1590.807074 1548.633542 0.789618023 0.994044002 0.833852927 1.124635647 0.852466657 0.878545666 0.697663256 0.534494463 1.027232738 1 10.59678008 -4.530232036 1.73419167 0.914901953 0.496507485 0.646230788 0.098122336 0.298002021 1.281391617 0.014922298 0.172426831 2.95E-05 4.530232036 -0.418394468 EGITGPPADSSKPIGPDDAIDALSSDFT(ph)CGSPTAAGK ddPTM_HeLa_CUDC101_4h_R1 2 EGITGPPADSSKPIGPDDAIDALSSDFTCGSPTAAGK 37 1 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;H0YA91;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 1 0 EGITGPPADSSKPIGPDDAIDALS(0.004)S(0.046)DFT(0.553)CGS(0.393)PT(0.004)AAGK;EGITGPPADSSKPIGPDDAIDALS(0.184)S(0.134)DFT(0.441)CGS(0.233)PT(0.01)AAGK ; 98.991 1.62E-13 98850000 15807.8 12959.7 13237.4 12647.4 15138.5 13644.6 14988 15388.5 15470.4 13781.1 TRUE FALSE FALSE 13954.83365 13358.973 13953.05388 13163.21564 14021.76302 13384.35199 15566.09218 17140.26464 14832.70356 13699.1294 1.018665729 0.975169487 1.018535812 0.960879721 1.023551395 0.977022086 1.136283316 1.251193717 1.082747898 1 13.74179659 -4.529947768 2.844994771 1.00313583 1.24736252 0.843953952 0.033686825 0.047980887 0.710403983 0.002997624 0.020170886 2.95E-05 4.529947768 0.24422669 GHKHEDGTQS(ph)DSEDPLAK ddPTM_HeLa_CUDC101_4h_R1 2 GHKHEDGTQSDSEDPLAK 18 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 GHKHEDGT(0.001)QS(0.557)DS(0.442)EDPLAK;GHKHEDGT(0.027)QS(0.801)DS(0.172)EDPLAK ; 96.633 0.00047777 4273500 4909 4259.5 4475.7 4313 5113.7 4159.4 4596 4512 4946.2 4676.5 TRUE FALSE FALSE 4333.574462 4390.730146 4717.66988 4488.902782 4736.472539 4080.066375 4773.26926 5025.627842 4742.315542 4648.68397 0.93221533 0.944510355 1.01483988 0.965628727 1.018884607 0.877682028 1.02680012 1.081086147 1.020141522 1 12.18260664 -4.529523061 24.99742619 0.967118246 1.067514672 0.38868917 0.043317847 91.42271196 343954.957 0.005644479 0.021217245 2.95E-05 4.529523061 0.100396427 SPSSESS(ph)PQHPTPPARPR ddPTM_HeLa_CUDC101_4h_R1 1 SPSSESSPQHPTPPARPR 18 1 O14733;O14733-4;O14733-3;O14733-2 O14733 MAP2K7 Dual specificity mitogen-activated protein kinase kinase 7 1 0 S(0.027)PS(0.129)S(0.129)ES(0.129)S(0.527)PQHPT(0.059)PPARPR 81.316 0.0047952 3220800 412.93 143.83 158.65 255.92 485.65 437.37 293.91 256.94 328.03 328.15 TRUE FALSE FALSE 364.5269714 148.2612318 167.2270989 266.3575238 449.8245671 429.027896 305.2462072 286.189011 314.5084646 326.1981492 1.117501654 0.454512793 0.512654959 0.816551303 1.378991782 1.315237064 0.93576928 0.877347133 0.964163854 1 8.349604786 -4.529351349 24.98252175 0.999354998 0.891952499 0 0.287482781 639.4054858 2467949.979 0.043199308 0.16247064 2.96E-05 4.529351349 -0.107402498 TSGPLS(ph)PPTGPPGPAPAGPAVR ddPTM_HeLa_CUDC101_4h_R1 1 TSGPLSPPTGPPGPAPAGPAVR 22 0 P49815;X5D2U8;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4;A0A2R8YHA2 P49815 TSC2 Tuberin 1 0 T(0.005)S(0.001)GPLS(0.961)PPT(0.033)GPPGPAPAGPAVR 86.573 0.00064645 5342600 1893.1 1236.3 1209.2 1436 1598.5 1350.2 1036.6 706.11 1242.5 1271.8 TRUE FALSE FALSE 1671.193688 1274.388938 1274.57301 1494.566287 1480.58184 1324.447185 1076.582009 786.4907082 1191.283624 1264.235277 1.32190085 1.008031464 1.008177064 1.182189988 1.171128402 1.047627138 0.851567765 0.622107864 0.942295826 1 10.30404926 -4.529269565 1.64720329 1.136958902 0.566331515 0.615152758 0.113418989 0.305483151 1.147359468 0.019054332 0.234252779 2.96E-05 4.529269565 -0.570627387 QKFNDS(ph)EGDDTEETEDYR ddPTM_HeLa_CUDC101_4h_R1 4 QKFNDSEGDDTEETEDYR 18 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 QKFNDS(0.62)EGDDT(0.352)EET(0.027)EDYR;QKFNDS(0.939)EGDDT(0.014)EET(0.046)EDYR;QKFNDS(0.988)EGDDT(0.007)EET(0.006)EDYR;QKFNDS(0.986)EGDDT(0.004)EET(0.01)EDYR ;;; 84.948 0.0040233 1037523000 9494 7826 8439.9 8116.9 8993.1 8312.61 8740.9 8764.45 9744.2 8145.2 TRUE FALSE FALSE 8381.127712 8067.109784 8896.186523 8447.942266 8329.69693 8154.060814 9078.039441 9762.159561 9342.539952 8096.751988 1.035122198 0.996339001 1.098735213 1.043374217 1.028770171 1.007078002 1.121195197 1.205688352 1.15386268 1 12.98312757 -4.528969028 2.775480256 1.02353619 1.203721805 0.461399301 0.050201624 0.096648725 1.34677135 0.004306232 0.029736117 2.96E-05 4.528969028 0.180185615 SVSS(ph)YGNIR ddPTM_HeLa_CUDC101_4h_R1 2 SVSSYGNIR 9 0 Q8N122;Q8N122-3 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 0 SVS(0.124)S(0.876)YGNIR;S(0.001)VS(0.041)S(0.959)YGNIR ; 169.99 4.17E-07 80616000 7143.3 5258.1 5723.9 6151.5 6078.7 5937.2 6565.8 6710.9 5910.4 6221.8 TRUE FALSE FALSE 6305.973203 5420.095829 6033.351348 6402.384759 5630.286411 5823.957802 6819.045105 7474.84173 5666.77081 6184.792457 1.019593341 0.876358563 0.975513955 1.035181828 0.910343629 0.941657759 1.102550353 1.208584085 0.916242679 1 12.59450947 -4.528802431 3.644870415 0.988885392 1.195951961 0.662093722 0.055137542 0.105049169 2.892656333 0.00746359 0.041189907 2.96E-05 4.528802431 0.207066569 S(ph)HSVPENMVEPPLSGR ddPTM_HeLa_CUDC101_4h_R1 1 SHSVPENMVEPPLSGR 16 0 A1L390-3;A1L390;G3V311;A1L390-2 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 S(0.837)HS(0.163)VPENMVEPPLSGR 146.1 0.00024094 11014000 941.48 798.96 646.88 608.96 843.29 718.16 1202.2 1482.5 708.12 829.3 TRUE FALSE FALSE 831.1211416 823.5750106 681.8522895 633.7960209 781.0821768 704.4622945 1248.569257 1651.261808 678.9309939 824.3672867 1.008192774 0.999038928 0.827121964 0.768827234 0.947492931 0.854549066 1.51457885 2.003065665 0.823578282 1 9.687143445 -4.528188379 2.894244688 0.962102529 1.983135761 0.921766189 0.102908206 0.056173469 0.866139906 0.014953337 0.099494444 2.96E-05 4.528188379 1.021033232 MLGEDSDEEEEMDT(ph)SER ddPTM_HeLa_CUDC101_4h_R1 1 MLGEDSDEEEEMDTSER 17 0 A0A087X0M4;Q9BWU0;A0A087WWF4;H7C256 A0A087X0M4 SLC4A1AP Kanadaptin 1 0 MLGEDS(0.355)DEEEEMDT(0.526)S(0.119)ER 132.17 0.0037226 16859000 1488.6 1370.2 965.23 895.35 1301.3 1112.1 1449.6 1583 1293.5 1256.8 TRUE FALSE FALSE 1314.108565 1412.414238 1017.413253 931.866243 1205.305692 1090.888545 1505.511558 1763.202321 1240.181383 1249.324498 1.051855276 1.130542337 0.81437069 0.745896078 0.964765915 0.873182706 1.205060463 1.411324539 0.992681553 1 10.28693253 -4.527919768 3.848621002 0.985543497 1.384007533 0.627477701 0.113165264 0.119613151 3.815831471 0.017347075 0.092553777 2.97E-05 4.527919768 0.398464036 SGDETPGS(ph)EVPGDKAAEEQGDDQDSEK ddPTM_HeLa_CUDC101_4h_R1 1 SGDETPGSEVPGDKAAEEQGDDQDSEK 27 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.015)GDET(0.261)PGS(0.72)EVPGDKAAEEQGDDQDS(0.004)EK 54.263 0.0064985 35850000 2880.7 2658.5 2262.5 2684.2 2678 3050.1 2274.3 1948.1 2533.9 2459.4 TRUE FALSE FALSE 2543.028713 2740.405234 2384.817594 2793.673278 2480.449275 2991.924424 2362.020513 2169.86383 2429.451569 2444.771379 1.040190806 1.120924949 0.975476731 1.142713508 1.014593551 1.223805403 0.9661519 0.88755286 0.993733643 1 11.25548384 -4.527891719 24.99981084 1.044821431 0.907202549 0.339141592 0.076261887 98.58761251 491662.9859 0.010071736 0.037947877 2.97E-05 4.527891719 -0.137618882 VQAYEEPSVASS(ph)PNGKESDLR ddPTM_HeLa_CUDC101_4h_R1 1 VQAYEEPSVASSPNGKESDLR 21 1 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 0 VQAYEEPS(0.001)VAS(0.194)S(0.802)PNGKES(0.003)DLR 91.733 0.00032409 19204000 941.06 1226.4 1175.4 977.04 1781.9 1346.6 1394.4 1734.3 912.86 877.37 TRUE FALSE FALSE 830.7503734 1264.18393 1238.945679 1016.887914 1650.452787 1320.915849 1448.182475 1931.725702 875.2315244 872.1513642 0.952530039 1.449500605 1.42056268 1.165953476 1.892392599 1.514548853 1.66047149 2.2148973 1.003531681 1 9.76843473 -4.526865632 0.303747205 0.916158878 2.782647072 0.737293668 0.202116765 2.30387044 0.176108347 0.094911493 1.559844215 2.97E-05 4.526865632 1.866488194 up IQQFDDGGS(ph)DEEDIWEEKHIAFTPESQR ddPTM_HeLa_CUDC101_4h_R1 1 IQQFDDGGSDEEDIWEEKHIAFTPESQR 28 1 H0YEN2;E9PQP7;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-2;Q5H9R7;Q5H9R7-5;Q5H9R7-3 H0YEN2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 0 IQQFDDGGS(1)DEEDIWEEKHIAFTPESQR 63.013 0.00077538 7725200 488.56 644.17 446.59 625.31 912.84 702.77 946.21 923.04 677.66 397.93 TRUE FALSE FALSE 431.2917374 664.0161142 470.7340063 650.8128446 845.5016118 689.3658331 982.7056367 1028.115143 649.726568 395.5630947 1.090323499 1.678660429 1.190035199 1.645282013 2.137463336 1.742745576 2.484320833 2.599117957 1.64253586 1 8.627764021 -4.52652185 0.330107905 0.956007613 3.725965773 0.680063992 0.296125176 1.318149434 0.116247593 0.078304878 1.422931542 2.97E-05 4.52652185 2.76995816 ALSYASLDKEDLLS(ph)PINQNTLQR ddPTM_HeLa_CUDC101_4h_R1 1 ALSYASLDKEDLLSPINQNTLQR 23 1 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 ALSYAS(0.003)LDKEDLLS(0.949)PINQNT(0.047)LQR 48.532 0.029192 15518000 824.19 596.75 708.35 680.68 1244 839.56 591.16 396.64 854.77 839.85 TRUE FALSE FALSE 727.5796976 615.1351602 746.6455436 708.4410726 1152.232598 823.5467918 613.9612392 441.7918943 819.5360188 834.8545348 0.871504756 0.736817175 0.894342083 0.848580253 1.380159717 0.986455433 0.735411037 0.529184278 0.981651275 1 9.705381034 -4.526446714 3.265113979 0.947443681 0.54788637 0.427135437 0.160428971 0.19225483 3.985698956 0.023136467 0.139476086 2.98E-05 4.526446714 -0.399557311 GTDDS(ph)PKDSQEDLQER ddPTM_HeLa_CUDC101_4h_R1 1 GTDDSPKDSQEDLQER 16 1 Q969E4;Q5H9L2;Q6IPX3-2;Q6IPX3 Q969E4 TCEAL3;TCEAL5;TCEAL6 Transcription elongation factor A protein-like 3;Transcription elongation factor A protein-like 5;Transcription elongation factor A protein-like 6 1 0 GTDDS(0.952)PKDS(0.047)QEDLQER 142.76 0.0014555 23608000 1338.6 1152.5 1476.5 1480.8 1289.1 1438.6 1129.6 936.33 1543.6 1335 TRUE FALSE FALSE 1181.691337 1188.007159 1556.324056 1541.193425 1194.005661 1411.161102 1173.16905 1042.918022 1479.972155 1327.059361 0.890458537 0.895217798 1.172761447 1.161359823 0.899737944 1.063374513 0.884036604 0.78588649 1.115226793 1 10.37401719 -4.525901941 5.211149593 0.97754225 0.805202767 0.269288286 0.109389651 0.173822075 14.51753288 0.01515328 0.069808714 2.98E-05 4.525901941 -0.172339483 S(ph)SSTSESGDSDNMR ddPTM_HeLa_CUDC101_4h_R1 1 SSSTSESGDSDNMR 14 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 S(0.283)S(0.283)S(0.116)T(0.283)S(0.035)ES(0.001)GDS(0.001)DNMR 133.04 0.00074085 5700700 991.64 1299.2 1152.4 1450.5 1348 1162.2 1336.7 1369.4 1435.4 1589 TRUE FALSE FALSE 875.4014624 1339.226812 1214.70223 1509.65766 1248.560726 1140.032971 1388.256967 1525.286961 1376.232204 1579.548557 0.554209909 0.847854158 0.769018606 0.955752612 0.790454158 0.721746075 0.87889477 0.965647402 0.871281986 1 10.62529657 -4.525744949 5.162550296 0.796205432 0.948702928 0.122990883 0.118564049 0.303975218 24.54370152 0.023195086 0.107302066 2.98E-05 4.525744949 0.152497496 TQMAEVLPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 TQMAEVLPSPR 11 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 TQMAEVLPS(1)PR;TQMAEVLPS(1)PR;TQMAEVLPS(1)PR;TQMAEVLPS(1)PR ;;; 122.78 0.0036403 426155000 9464.2 7484 7492.4 7159.9 8230.8 7463.4 6571 3144.98 6738.6 7599.6 TRUE FALSE FALSE 8354.820823 7714.573169 7897.461807 7451.91167 7623.630282 7321.04808 6824.445671 3502.991811 6460.832056 7554.397241 1.105954659 1.021203006 1.045412566 0.986433653 1.009164602 0.969110817 0.903373949 0.463702358 0.855241239 1 12.88310093 -4.054685742 1.422672247 1.040509505 1.13E-15 0.839084887 0.068530277 0.352561355 0.436929643 0.006835542 0.597685736 8.82E-05 4.054685742 -1.040509505 down KIPEFEVENS(ph)PLSDVAK ddPTM_HeLa_CUDC101_4h_R1 1 KIPEFEVENSPLSDVAK 17 1 Q7Z4H7-3;Q7Z4H7;Q5VY60;Q5SYF9;Q7Z4H7-2 Q7Z4H7-3 HAUS6 HAUS augmin-like complex subunit 6 1 0 KIPEFEVENS(0.99)PLS(0.01)DVAK 90.464 0.0036141 45052000 2117.5 1970 1662.4 1839.2 2189.6 2083.2 1500.2 1060.9 2163.6 2127.8 TRUE FALSE FALSE 1869.28986 2030.693365 1752.274372 1914.210526 2028.07757 2043.466431 1558.063217 1181.668568 2074.415492 2115.143751 0.883764926 0.960073453 0.828442214 0.905002568 0.958836755 0.966112317 0.736622849 0.558670571 0.980744449 1 11.04654 -4.525014816 2.764963223 0.936105752 0.562440407 0.853570376 0.050134707 0.090232715 1.242317998 0.008238556 0.057694147 2.99E-05 4.525014816 -0.373665345 IEEDNLTYQHLLPES(ph)PEPSASHALSDYETSEK ddPTM_HeLa_CUDC101_4h_R1 1 IEEDNLTYQHLLPESPEPSASHALSDYETSEK 32 0 Q5JTU8;B1AMJ5;A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8 Q5JTU8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 IEEDNLTY(0.001)QHLLPES(0.666)PEPS(0.234)AS(0.092)HALS(0.004)DY(0.002)ET(0.001)SEK 60.031 0.00085651 10513000 2294.4 1251.9 1123.7 1260 3369 2218.1 1704.1 1393.2 2220 2045 TRUE FALSE FALSE 2025.45391 1290.469555 1184.450621 1311.388246 3120.475582 2175.793438 1769.827708 1551.796256 2128.49066 2032.836249 0.996368454 0.634812349 0.58265914 0.645102746 1.535035389 1.070324006 0.870619908 0.763365105 1.047054656 1 10.98927829 -4.524449596 7.133800274 0.960026864 0.788400346 0.034851705 0.264818919 0.30807101 98.38282645 0.037662545 0.160102374 2.99E-05 4.524449596 -0.171626518 AEGSSTASS(ph)GSQLAEGK ddPTM_HeLa_CUDC101_4h_R1 1 AEGSSTASSGSQLAEGK 17 0 Q9NZB2-4;Q9NZB2;Q9NZB2-6;A0A0C4DH52;Q9NZB2-2;Q9NZB2-5 Q9NZB2-4 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 1 0 AEGSS(0.001)T(0.003)AS(0.075)S(0.742)GS(0.178)QLAEGK 237.81 1.23E-43 9953800 1625.9 1478 1275.9 1449.3 1574.4 1193.1 1616.4 1699.8 1282.3 1676.5 TRUE FALSE FALSE 1435.314467 1523.535428 1344.879013 1508.408718 1458.259649 1170.343605 1678.745089 1893.298361 1229.443051 1666.528103 0.861260283 0.914197261 0.8069945 0.905120481 0.875028537 0.702264548 1.007330801 1.136073468 0.737727164 1 10.70262993 -4.524366099 24.98979679 0.902145467 1.103887874 0.418409036 0.094452057 30.27473457 508679.2508 0.012637207 0.048058068 2.99E-05 4.524366099 0.201742407 S(ph)SGREEDDEELLR ddPTM_HeLa_CUDC101_4h_R1 2 SSGREEDDEELLR 13 1 O14639-3;O14639-5;J3QSX6;O14639-4;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639;A0A494C1P1;A0A494C1G0 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 1 0 S(0.5)S(0.5)GREEDDEELLR;S(0.881)S(0.119)GREEDDEELLR ; 157.2 0.00040926 82809000 3568.7 3288.1 2813.06 3006.5 3517.2 2663.69 2323.63 1588.21 3545.5 3124.3 TRUE FALSE FALSE 3150.382396 3389.402464 2965.142533 3129.118065 3257.743163 2612.884551 2413.253187 1769.005407 3399.352989 3105.716525 1.014381825 1.091343153 0.954737018 1.007534989 1.048950584 0.841314566 0.777035885 0.569596546 1.094547092 1 11.60071044 -4.524343009 1.15842029 1.013047207 0.480325132 0.89679266 0.050394201 0.19302609 0.286555936 0.006144307 0.110287881 2.99E-05 4.524343009 -0.532722075 LSGFS(ph)FKK ddPTM_HeLa_CUDC101_4h_R1 2 LSGFSFKK 8 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 LSGFS(1)FKK;LS(0.139)GFS(0.861)FKK ; 112.36 0.021513 5950000000 4704.5 4060.1 3551.7 3862.7 4256.9 4628.8 5142.7 5714.1 4058.1 4322.4 TRUE FALSE FALSE 4153.045642 4185.186869 3743.715645 4020.237602 3942.876968 4540.513352 5341.055662 6364.570047 3890.8234 4296.690173 0.966568562 0.974049024 0.871302211 0.93565918 0.917654476 1.056746745 1.243062787 1.481272745 0.90553967 1 12.06901004 -4.523785825 1.703279171 0.966722103 1.53166736 0.940020297 0.043792622 0.102721325 0.41840419 0.006636499 0.079753641 2.99E-05 4.523785825 0.564945257 YFPSSLSPVTPSES(ph)LPRPR ddPTM_HeLa_CUDC101_4h_R1 1 YFPSSLSPVTPSESLPRPR 19 1 K7EKZ6;K7EQ21;Q9P0U4;Q9P0U4-2 K7EKZ6 CXXC1 CXXC-type zinc finger protein 1 1 0 YFPS(0.095)S(0.021)LS(0.017)PVT(0.061)PS(0.11)ES(0.696)LPRPR 86.911 0.02189 12830000 834.4 716.39 769.71 869.62 942.65 791.62 923.43 974.66 953.3 885.44 TRUE FALSE FALSE 736.5928969 738.4611268 811.3228508 905.0868624 873.1125875 776.5211674 959.0470044 1085.611355 914.0045705 880.1733635 0.836872516 0.838995086 0.921776191 1.028305218 0.991977971 0.882236613 1.089611484 1.233406281 1.038436981 1 9.781643902 -4.523670797 2.90856378 0.925555377 1.228441954 0.616342785 0.072089577 0.141759908 2.205633961 0.011176844 0.074917822 2.99E-05 4.523670797 0.302886577 SNS(ph)MLELAPK ddPTM_HeLa_CUDC101_4h_R1 1 SNSMLELAPK 10 0 A2A3M4;A6PVU7;Q9P2M7-2;Q9P2M7 A2A3M4 CGN Cingulin 1 0 S(0.215)NS(0.785)MLELAPK 115.34 0.0063728 2589800 1633.5 1484.4 1455.5 1491.1 1582.2 1361.2 1601.2 1643.6 1068.1 1676 TRUE FALSE FALSE 1442.023606 1530.132605 1534.188733 1551.913503 1465.484258 1335.237378 1662.95882 1830.70078 1024.072466 1666.031077 0.865544242 0.918429809 0.920864414 0.931503334 0.879626003 0.801448062 0.998155943 1.098839515 0.614677889 1 10.7021996 -4.523378604 24.99996243 0.920438597 1.073668666 0.222430258 0.109278383 10.0448648 502440.5286 0.008945524 0.034132824 3.00E-05 4.523378604 0.153230069 T(ph)LPQLPNEEK ddPTM_HeLa_CUDC101_4h_R1 2 TLPQLPNEEK 10 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 T(1)LPQLPNEEK;T(1)LPQLPNEEK ; 155.86 0.00047937 17736500 2848.5 2500.5 2479.33 2399.1 3181.8 3189.2 2154.99 1598.49 2468.4 2521.9 TRUE FALSE FALSE 2514.603148 2577.537441 2613.370079 2496.945668 2947.084953 3128.371324 2238.108686 1780.45564 2366.651507 2506.899627 1.003072928 1.028177361 1.042470968 0.996029375 1.17558953 1.247904499 0.892779536 0.710222149 0.944055152 1 11.29168852 -4.523281554 24.99977739 1.032909991 0.755861414 0.586205691 0.089445806 6.399202935 397212.9133 0.012705156 0.048489572 3.00E-05 4.523281554 -0.277048577 QTELFAHFIQPSAQKS(ph)PTSPLNMK ddPTM_HeLa_CUDC101_4h_R1 2 QTELFAHFIQPSAQKSPTSPLNMK 24 1 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 A0A0A0MRP6 SMARCA1 Probable global transcription activator SNF2L1 1 0 QTELFAHFIQPS(0.007)AQKS(0.898)PT(0.071)S(0.025)PLNMK;QTELFAHFIQPS(0.144)AQKS(0.59)PT(0.114)S(0.152)PLNMK ; 73.459 0.00031829 15639100 1514.05 1096.64 1022.5 1350.78 1528.82 1104.2 1415.19 1477.92 1083.24 1461.35 TRUE FALSE FALSE 1336.575354 1130.426179 1077.779443 1405.870647 1416.041994 1083.139225 1469.774352 1646.160439 1038.588389 1452.657825 0.920089598 0.778177874 0.741936211 0.967792017 0.974793905 0.745625849 1.011782904 1.133205914 0.71495735 1 10.5044792 -4.522861567 25 0.920805155 1.102850224 0.25703438 0.117351652 0.502823475 727878.8519 0.014969256 0.057217671 3.00E-05 4.522861567 0.182045069 PTQGALGEQQDLSNTTS(ph)KR ddPTM_HeLa_CUDC101_4h_R1 1 PTQGALGEQQDLSNTTSKR 19 1 A0A2R8YGX0;P10071 A0A2R8YGX0 GLI3 Transcriptional activator GLI3;Transcriptional repressor GLI3R 1 0 PTQGALGEQQDLS(0.002)NT(0.05)T(0.05)S(0.899)KR 51.31 0.034079 5243200 4110.3 2816.4 3086 3275.3 3942.1 4022.4 4624.6 5080.7 3146.9 3341.3 TRUE FALSE FALSE 3628.496865 2903.169946 3252.838495 3408.880891 3651.299137 3945.679422 4802.972371 5659.066351 3017.18345 3321.425799 1.092451581 0.874073401 0.979350042 1.026330587 1.099316787 1.187947484 1.446057405 1.703806345 0.908400077 1 11.69758697 -4.52223951 1.172743153 1.024360399 1.862446007 0.925080975 0.067033049 0.193569883 0.296027814 0.009840431 0.175659842 3.00E-05 4.52223951 0.838085608 GYQSLSDS(ph)PPGSR ddPTM_HeLa_CUDC101_4h_R1 2 GYQSLSDSPPGSR 13 0 Q9NPR2 Q9NPR2 SEMA4B Semaphorin-4B 1 0 GYQS(0.01)LS(0.237)DS(0.741)PPGS(0.012)R;GYQSLS(0.199)DS(0.8)PPGS(0.001)R ; 122.63 0.00015106 5062200 2769 2344 1942.35 2271.1 2400.7 2348.8 1819 1435.17 1932.35 1911.06 TRUE FALSE FALSE 2444.422018 2416.215862 2047.359316 2363.725275 2223.605144 2304.000553 1889.159439 1598.543952 1852.697715 1899.69293 1.286745862 1.271898118 1.077731713 1.244267027 1.170507669 1.212827882 0.994455161 0.841474917 0.975261678 1 10.89155052 -4.521712594 3.259412651 1.157995598 0.853512115 0.484558242 0.103144865 0.182874707 3.765347441 0.016594398 0.101461167 3.01E-05 4.521712594 -0.304483484 S(ph)SSPTQYGLTK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPTQYGLTK 11 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 0 S(0.333)S(0.333)S(0.333)PT(0.001)QYGLTK 179.5 1.09E-07 199920000 8795.1 7133.4 6611.8 7948.4 7889.1 6428.6 7193.2 6908.8 6706.3 7020.2 TRUE FALSE FALSE 7764.151711 7353.171599 6969.253908 8272.570108 7307.13681 6305.985166 7470.644134 7695.269866 6429.863475 6978.443538 1.112590747 1.053697943 0.99868314 1.185446305 1.04710123 0.903637771 1.070531572 1.102720087 0.921389339 1 12.76868958 -4.520759061 24.99841913 1.049162602 1.094672998 0.034697819 0.080718382 187.6416458 2212883.758 0.01029368 0.03982902 3.01E-05 4.520759061 0.045510396 EVIKS(ph)PTASR ddPTM_HeLa_CUDC101_4h_R1 1 EVIKSPTASR 10 1 O94885 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 0 EVIKS(0.5)PT(0.5)AS(0.001)R 126.66 0.01603 45836000 1719.9 1942.9 1812.6 1802.7 1853.6 1479.4 1787.1 1794.9 2147.9 1967.8 TRUE FALSE FALSE 1518.295929 2002.758446 1910.594639 1876.221898 1716.863621 1451.18291 1856.029046 1999.224161 2059.362653 1956.095438 0.776187041 1.02385518 0.976738968 0.959166849 0.877699312 0.741877355 0.948843809 1.022048373 1.052792524 1 10.93376105 -4.520614929 24.99799082 0.90064761 1.003747282 0.027828045 0.099485404 128.633256 1420382.911 0.014676154 0.056864416 3.02E-05 4.520614929 0.103099673 RQS(ph)STPSAPELGQQPDVNISEWK ddPTM_HeLa_CUDC101_4h_R1 2 RQSSTPSAPELGQQPDVNISEWK 23 1 I3L213;Q93100-4;Q93100-2;Q93100-3;Q93100 I3L213 PHKB Phosphorylase b kinase regulatory subunit beta 1 0 RQS(0.415)S(0.415)T(0.155)PS(0.014)APELGQQPDVNISEWK;RQS(0.508)S(0.334)T(0.117)PS(0.041)APELGQQPDVNISEWK ; 107.7 6.05E-06 30466000 4986 3568.1 3419.6 3404.6 4388.4 4012.7 3944.3 3795.3 3686.6 3674.2 TRUE FALSE FALSE 4401.548638 3678.028932 3604.47392 3543.454304 4064.676475 3936.164433 4096.432972 4227.341611 3534.636788 3652.345695 1.205129253 1.007031984 0.986892869 0.970185902 1.112894784 1.077708618 1.121589607 1.157431953 0.967771696 1 11.83460761 -4.520232887 1.812277222 1.075029257 1.165191599 0.104728805 0.076739679 1.179780118 5.623276505 0.01342193 0.15163739 3.02E-05 4.520232887 0.090162342 GLMAGGRPEGQY(ph)SEDEDTDTDEYK ddPTM_HeLa_CUDC101_4h_R1 1 GLMAGGRPEGQYSEDEDTDTDEYK 24 1 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;H0YC88 H0YE35 RIC8A Synembryn-A 1 0 GLMAGGRPEGQY(0.504)S(0.43)EDEDT(0.061)DT(0.005)DEY(0.001)K 74.364 0.00098072 7589500 826.04 965.9 646.36 667.19 934.62 714.87 615.57 456.91 909.27 798.06 TRUE FALSE FALSE 729.2128434 995.6582341 681.3041767 694.400892 865.6749446 701.2350458 639.3127411 508.9227875 871.7895057 793.3131036 0.919199292 1.255063391 0.858808677 0.875317562 1.091214731 0.883932262 0.805876946 0.64151567 1.098922357 1 9.631746569 -4.519870161 1.5955956 0.976662604 0.604997074 0.496231376 0.117129133 0.412146243 1.408828315 0.015509393 0.203097969 3.02E-05 4.519870161 -0.371665531 NMTVEQLLTGSPTS(ph)PTVEPEKPTR ddPTM_HeLa_CUDC101_4h_R1 1 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 NMTVEQLLTGSPT(0.359)S(0.637)PT(0.004)VEPEKPTR 181.49 4.87E-15 68934000 1430.3 1235 1184.9 1009.8 1466.9 1656.1 1509.3 1790.4 1196.9 1240.3 TRUE FALSE FALSE 1262.642402 1273.048886 1248.959278 1050.984009 1358.689709 1624.512652 1567.514207 1994.211899 1147.563275 1232.92264 1.024105131 1.032545631 1.01300701 0.852433052 1.102007267 1.317611177 1.271380827 1.617467174 0.93076665 1 10.26786657 -4.519556845 0.927043872 1.003096581 1.753088141 0.854785097 0.081704533 0.383502576 0.320117685 0.012132819 0.262640646 3.02E-05 4.519556845 0.74999156 RNDEITDESLENFPSSTVAGGS(ph)QSPK ddPTM_HeLa_CUDC101_4h_R1 1 RNDEITDESLENFPSSTVAGGSQSPK 26 1 B3KSJ7;Q96SD1-2;Q96SD1-3;Q96SD1 B3KSJ7 DCLRE1C Protein artemis 1 0 RNDEITDESLENFPS(0.15)S(0.15)T(0.15)VAGGS(0.304)QS(0.245)PK 72.842 0.0001574 10521000 1440.8 1503.8 1355.4 1005.9 1389.9 1214.8 1112.5 495.32 1519.6 1451.4 TRUE FALSE FALSE 1271.911608 1550.130296 1428.677024 1046.92495 1287.369846 1191.629714 1155.409498 551.7052266 1456.961445 1442.767008 0.881577968 1.074414848 0.990234054 0.72563688 0.892292268 0.825933576 0.800828887 0.382393847 1.009838343 1 10.49462262 -4.05074576 1.010593702 0.940391645 1.65E-43 0.752896715 0.093961314 1.052132866 0.629346251 0.014579403 1.179564792 8.90E-05 4.05074576 -0.940391645 down SLS(ph)ESSVIMDR ddPTM_HeLa_CUDC101_4h_R1 4 SLSESSVIMDR 11 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 S(0.001)LS(0.999)ESSVIMDR;S(0.052)LS(0.927)ES(0.008)S(0.013)VIMDR;SLS(0.997)ES(0.001)S(0.001)VIMDR;S(0.001)LS(0.975)ES(0.012)S(0.012)VIMDR ;;; 200.82 1.80E-16 165170000 9390.3 8050.7 7118.64 8277.39 8891 7442.87 6489.33 4939.48 7839.6 7895.8 TRUE FALSE FALSE 8289.583269 8298.732525 7503.495211 8614.977742 8235.128643 7300.909655 6739.625632 5501.770437 7516.44837 7848.83543 1.056154552 1.057320235 0.956001088 1.097612228 1.049216628 0.930190182 0.858678423 0.700966466 0.957651417 1 12.93826289 -4.519556579 1.360289815 1.030657364 0.649734078 0.834647583 0.04547801 0.204805659 0.460312701 0.006006531 0.093563175 3.02E-05 4.519556579 -0.380923286 LTDSS(ph)PSSTSTSNSQR ddPTM_HeLa_CUDC101_4h_R1 1 LTDSSPSSTSTSNSQR 16 0 Q5VT06 Q5VT06 CEP350 Centrosome-associated protein 350 1 0 LT(0.003)DS(0.105)S(0.836)PS(0.014)S(0.032)T(0.01)STSNSQR 170.48 7.21E-07 4227900 1537.8 1513.1 1305.3 1508.6 1311.7 1334.9 1143.7 953.99 1486.1 1299.6 TRUE FALSE FALSE 1357.541415 1559.716818 1375.868466 1570.127229 1214.938504 1309.439007 1187.812892 1062.588365 1424.842329 1291.869921 1.050834448 1.207332713 1.0650209 1.215391118 0.940449564 1.013599732 0.919452394 0.822519627 1.102930183 1 10.3352451 -4.517437051 1.245419455 1.052025698 0.777188244 0.508592476 0.082084137 0.700613879 1.246749359 0.012738805 0.217836473 3.04E-05 4.517437051 -0.274837454 LCALTTMLSSYQILS(ph)T(ph)S(ph)QELK ddPTM_HeLa_CUDC101_4h_R1 1 LCALTTMLSSYQILSTSQELK 21 0 Q9ULX5;Q9ULX5-2 Q9ULX5 RNF112 RING finger protein 112 3 0 LCALT(0.001)T(0.002)MLS(0.002)S(0.007)Y(0.007)QILS(0.993)T(0.994)S(0.994)QELK 60.398 0.0015814 0 545.77 498.17 531.08 257.51 345.18 526.71 618.94 765.19 519.15 413 TRUE FALSE FALSE 481.7956679 513.5180272 559.7917912 268.0123709 319.7167591 516.6638843 642.8127231 852.2961366 497.7504173 410.5434576 1.173555829 1.250825017 1.363538453 0.652823388 0.778764716 1.258487682 1.565760484 2.076019288 1.21241834 1 8.681391135 -4.516899647 1.939195862 1.068203953 2.133141896 0.701383382 0.207409453 0.204916711 1.158658679 0.030652489 0.32306746 3.04E-05 4.516899647 1.064937943 up SRT(ph)SPVTR ddPTM_HeLa_CUDC101_4h_R1 1 SRTSPVTR 8 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.017)RT(0.758)S(0.225)PVTR 66.962 0.0031434 0 1106.3 344.65 846.62 921.02 580.67 536.25 503.65 318.18 905.13 877.54 TRUE FALSE FALSE 976.621191 355.268258 892.3908381 958.5831766 537.835131 526.0219247 523.0759492 354.4003251 867.8201583 872.3203531 1.119567126 0.407268106 1.023008159 1.098888927 0.616556898 0.603014618 0.599637447 0.406273136 0.994841121 1 9.768714241 -4.516571067 0.371992961 1.054901081 0.028125357 0.424854654 0.206204669 3.137107544 0.341870098 0.066848273 1.393045379 3.04E-05 4.516571067 -1.026775725 TSSKES(ph)S(ph)PIPS(ph)PTSDRK ddPTM_HeLa_CUDC101_4h_R1 1 TSSKESSPIPSPTSDRK 17 2 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 3 0 T(0.314)S(0.376)S(0.414)KES(0.448)S(0.448)PIPS(0.95)PT(0.026)S(0.024)DRK 66.644 0.030727 215750000 3947.4 3485.6 3494.6 3461.2 3391.8 3457.8 3720.6 3736.6 3797.3 3779.9 TRUE FALSE FALSE 3484.691756 3592.987205 3683.528647 3602.362697 3141.593671 3391.848226 3864.104788 4161.95944 3640.773687 3757.416987 0.927416831 0.956238612 0.980335337 0.958733808 0.836104612 0.902707429 1.028393921 1.107665041 0.96895652 1 11.87552552 -4.516331264 4.170815312 0.952339394 1.096002188 0.575184576 0.045082847 0.130662415 5.231318063 0.007250648 0.038218074 3.05E-05 4.516331264 0.143662794 SAQGS(ph)SSPVPS(ph)MVQKSPR ddPTM_HeLa_CUDC101_4h_R1 1 SAQGSSSPVPSMVQKSPR 18 1 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 2 0 S(0.056)AQGS(0.434)S(0.154)S(0.356)PVPS(0.92)MVQKS(0.079)PR 150.65 4.54E-07 0 2150.4 2261.7 2002.5 1643.1 2182.7 1778.7 1556.6 1225.1 2059.7 1931.3 TRUE FALSE FALSE 1898.333372 2331.380296 2110.761207 1710.11272 2021.68657 1744.774261 1616.638583 1364.560432 1974.798294 1919.812542 0.98881184 1.214379136 1.099462141 0.890770678 1.05306457 0.908825327 0.842081478 0.710777955 1.028641209 1 10.90674973 -4.516328685 1.124381378 1.016757294 0.639592628 0.634890279 0.081408684 0.606030276 0.825621888 0.012798518 0.240827607 3.05E-05 4.516328685 -0.377164666 DASGDGELDLSGIDDLEIDR ddPTM_HeLa_CUDC101_4h_R1 1 DASGDGELDLSGIDDLEIDR 20 0 Q92994-9;Q92994-3;Q92994-7;Q92994-8;Q92994-5;Q92994 Q92994-9 BRF1 Transcription factor IIIB 90 kDa subunit 0 0 122.63 0.00012861 1840200 1096.8 876.66 715.01 640.71 805.34 817.64 576.03 322.53 878.25 768.38 FALSE FALSE TRUE 968.2347666 903.6688555 753.6656034 666.8409232 745.9316727 802.0448793 598.2476701 359.2455115 842.0481633 763.8096416 1.267638838 1.183107421 0.986719154 0.873045962 0.976593685 1.050058595 0.783241841 0.470333827 1.102431964 1 9.577069321 -4.047440678 0.689162218 1.114412023 1.67E-21 0.738922022 0.108764993 1.756110204 0.475822677 0.02367694 1.630481834 8.97E-05 4.047440678 -1.114412023 down HEVSASTQSTPASS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 HEVSASTQSTPASSR 15 0 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 HEVSAS(0.005)T(0.005)QS(0.117)T(0.322)PAS(0.117)S(0.433)R;HEVSASTQS(0.041)T(0.041)PAS(0.087)S(0.83)R ; 111.11 0.0015022 8436200 2439.7 1652.35 1844.32 1709.63 2263.1 2035.8 2445.1 2598.9 2019.52 2510.71 TRUE FALSE FALSE 2153.722064 1703.256945 1944.029518 1779.356101 2096.155622 1996.970507 2539.408326 2894.748271 1936.274531 2495.776185 0.862946797 0.682455805 0.778927826 0.712946983 0.83988125 0.80014006 1.017482393 1.15985892 0.775820581 1 11.28527285 -4.516096894 3.739152266 0.875000894 1.143155597 0.482076603 0.103047284 0.191921502 5.632837452 0.017692809 0.099545703 3.05E-05 4.516096894 0.268154703 VFCVEEEDSES(ph)SLQK ddPTM_HeLa_CUDC101_4h_R1 1 VFCVEEEDSESSLQK 15 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VFCVEEEDS(0.07)ES(0.865)S(0.065)LQK 244.23 1.44E-55 12936000 1350.2 913.26 887.33 943.97 1164.2 984.24 713.62 495.93 1034.1 649.03 TRUE FALSE FALSE 1191.931603 941.3964581 935.3017438 982.4691768 1078.319285 965.4672619 741.1445624 552.3846666 991.4739603 645.1695407 1.847470359 1.45914585 1.449699164 1.52280775 1.671373519 1.496455119 1.148759381 0.856185284 1.536764986 1 9.333534518 -4.515532543 2.918819574 1.448934524 0.86803844 0.489940981 0.207208813 0.297654072 4.642821146 0.044557139 0.304245703 3.05E-05 4.515532543 -0.580896084 LQNINLAMS(ph)PLPTAETPKPLR ddPTM_HeLa_CUDC101_4h_R1 1 LQNINLAMSPLPTAETPKPLR 21 1 Q16665-3;A8MYV6;Q16665-2;Q16665 Q16665-3 HIF1A Hypoxia-inducible factor 1-alpha 1 0 LQNINLAMS(1)PLPTAETPKPLR 142.32 4.40E-07 27921000 335.81 187.15 116.75 172 274.8 422.47 5303.2 9010.1 249.56 301.67 TRUE FALSE FALSE 296.4468609 192.9158697 123.0618581 179.0149034 254.5285515 414.4120886 5507.7462 10035.77336 239.2730312 299.8756534 0.988565952 0.643319548 0.41037629 0.596963779 0.848780315 1.38194643 18.36676682 33.46644934 0.797907494 1 8.228220586 -4.51540809 2.152342597 0.811182649 35.08404562 0.993934096 0.824719138 0.022371755 0.16467412 0.127422981 1.195243879 3.05E-05 4.51540809 34.27286298 up GQGESDPLDHEPAVS(ph)PLLPR ddPTM_HeLa_CUDC101_4h_R1 4 GQGESDPLDHEPAVSPLLPR 20 0 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 1 0 GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR ;;; 136.61 1.32E-05 162650800 11264.36 7506.89 6423.99 7160.33 11532.05 9829.74 9945.1 9995.96 10766.1 10094.65 TRUE FALSE FALSE 9943.968796 7738.168383 6771.290331 7452.359207 10681.35365 9642.254087 10328.68584 11133.85968 10322.3168 10034.60657 0.990967481 0.771148159 0.674793803 0.742665809 1.064451662 0.960900063 1.029306507 1.109546209 1.0286718 1 13.29269643 -4.515248119 1.382433248 0.93892271 1.135110297 0.18823116 0.12881749 1.417457737 3.307300094 0.021782704 0.337770563 3.05E-05 4.515248119 0.196187587 S(ph)PGAFDMSGVR ddPTM_HeLa_CUDC101_4h_R1 1 SPGAFDMSGVR 11 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 S(1)PGAFDMSGVR 138.42 0.001498 13282000 1230.7 889.18 772.03 903.15 890.97 977.06 733.03 565.83 974.16 727.22 TRUE FALSE FALSE 1086.439212 916.5745819 813.7682771 939.9843607 825.2449182 958.4242084 761.3032126 630.2418 934.0047125 722.8944631 1.502901554 1.267923091 1.125708272 1.300306488 1.141584229 1.325814842 1.053131891 0.871830996 1.292034675 1 9.49764123 -4.512892391 3.441680101 1.23862491 0.887867275 0.459747287 0.128892709 0.238858692 5.613408124 0.026122311 0.157003519 3.07E-05 4.512892391 -0.350757636 SPSEGQTATT(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 SPSEGQTATTSPR 13 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 SPSEGQTAT(0.022)T(0.787)S(0.19)PR 124.42 0.0084558 15148000 3014.4 2792.5 2718.6 2593.8 2865.9 2656.2 2818.4 2813.8 2923.6 2784.9 TRUE FALSE FALSE 2661.056602 2878.533615 2865.575739 2699.586375 2654.488267 2605.537411 2927.106632 3134.111618 2803.087971 2768.335291 0.961247942 1.039806711 1.035125965 0.975165972 0.958875276 0.94119286 1.057352641 1.132128622 1.012553638 1 11.43480297 -4.512421842 3.909881099 0.985100201 1.122607134 0.661009218 0.031732392 0.094338907 3.121310096 0.004634551 0.025646422 3.07E-05 4.512421842 0.137506934 SISSPSVSSET(ph)MDKPVDLSTR ddPTM_HeLa_CUDC101_4h_R1 1 SISSPSVSSETMDKPVDLSTR 21 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 SIS(0.002)S(0.016)PS(0.014)VS(0.046)S(0.091)ET(0.831)MDKPVDLSTR 70.615 0.0034565 21871000 2353 1511.6 1444.3 1520.6 1709.8 1692.4 1142.6 842.73 1700.8 2279.1 TRUE FALSE FALSE 2077.184907 1558.170604 1522.383227 1582.616641 1583.67146 1660.12029 1186.670465 938.6629768 1630.692304 2265.543812 0.916859297 0.687768913 0.671972539 0.698559274 0.699024866 0.732769007 0.523790561 0.414321264 0.719779638 1 11.14564168 -4.511503428 0.186626753 1.087783501 2.21E-18 0.454676245 0.117150819 4.257780875 0.157708539 0.13651685 1.12044298 3.08E-05 4.511503428 -1.087783501 WTAPES(ph)LAY(ph)NTFS(ph)IK ddPTM_HeLa_CUDC101_4h_R1 1 WTAPESLAYNTFSIK 15 0 P42684-2;P42684-6;P42684-3;P42684;P42684-4;P42684-7;P42684-10;P42684-5;P42684-8 P42684-2 ABL2 Abelson tyrosine-protein kinase 2 3 0 WT(0.013)APES(0.985)LAY(0.988)NT(0.018)FS(0.997)IK 68.329 0.0023982 0 431.49 385.2 305.43 213.73 343.45 306.06 438.91 507.81 376.22 349.18 TRUE FALSE FALSE 380.9113963 397.0675554 321.9424697 222.4468332 318.1143777 300.2224154 455.8389057 565.6170378 360.7120524 347.1030618 1.09740143 1.143947142 0.927512618 0.640866814 0.916483929 0.864937387 1.313266738 1.629536296 1.039207348 1 8.439220281 -4.510805048 3.41637708 0.997994866 1.602101365 0.700508228 0.139823586 0.117681842 2.708252731 0.021890128 0.133054016 3.08E-05 4.510805048 0.604106499 TATSLPVVNFGS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 2 TATSLPVVNFGSPLR 15 0 Q96T17;Q96T17-2;Q96T17-5;Q96T17-4 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 TATSLPVVNFGS(1)PLR;TATSLPVVNFGS(1)PLR ; 173.51 5.15E-07 43393000 2512.67 2339.1 2526.51 2492.86 2993.17 2406.51 1898.19 1264.99 2353.91 2902.95 TRUE FALSE FALSE 2218.138632 2411.164898 2663.100773 2594.529606 2772.369812 2360.609831 1971.403824 1408.991348 2256.880833 2885.683124 0.768670203 0.835561215 0.922866669 0.899104127 0.960732587 0.818041943 0.683167118 0.488269601 0.782095863 1 11.49469717 -4.510084201 1.740969163 0.891402355 0.449211186 0.755173618 0.070316936 0.255984667 1.086429715 0.01302414 0.158811259 3.09E-05 4.510084201 -0.442191169 GSVSQPSTPS(ph)PPKPTGIFQTSANSSFEPVK ddPTM_HeLa_CUDC101_4h_R1 2 GSVSQPSTPSPPKPTGIFQTSANSSFEPVK 30 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 GSVSQPS(0.012)T(0.014)PS(0.886)PPKPT(0.085)GIFQT(0.001)SANSSFEPVK;GSVS(0.003)QPS(0.271)T(0.218)PS(0.402)PPKPT(0.021)GIFQT(0.06)S(0.017)ANS(0.006)S(0.002)FEPVK ; 82.086 4.64E-07 37334000 2393.3 2399.6 2392.7 2286.7 2318.7 2267.7 2108.7 1821.5 2513.1 2459.3 TRUE FALSE FALSE 2112.761002 2473.528832 2522.0566 2379.96151 2147.654121 2224.447401 2190.033265 2028.852197 2409.508954 2444.671974 0.864230876 1.011803979 1.0316544 0.973530001 0.878504005 0.909916514 0.895839314 0.829907742 0.985616467 1 11.25542518 -4.5085844 0.897824818 0.948585643 0.803540747 0.400906509 0.051820378 1.830103495 1.395332575 0.010473956 0.237473093 3.10E-05 4.5085844 -0.145044896 EGAAS(ph)PAPETPQPTS(ph)PETSPK ddPTM_HeLa_CUDC101_4h_R1 1 EGAASPAPETPQPTSPETSPK 21 0 A0A2R8Y4Z8;Q9Y3X0 A0A2R8Y4Z8;Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 2 0 EGAAS(0.927)PAPET(0.073)PQPT(0.033)S(0.921)PET(0.021)S(0.025)PK 116.05 2.53E-05 4706400 3732.6 3643.9 3354.2 3166.5 3751.4 3469.5 2714.2 2053.9 3538.4 3641.1 TRUE FALSE FALSE 3295.070286 3756.16424 3535.538198 3295.643557 3474.666696 3403.325068 2818.887603 2287.707674 3392.545654 3619.442575 0.910380595 1.037774232 0.976818426 0.910538982 0.960000504 0.940289837 0.778818159 0.632060774 0.93731164 1 11.82155181 -4.508521488 1.831038189 0.961668498 0.599379975 0.892371754 0.037042302 0.136741859 0.660434878 0.00619435 0.071549142 3.10E-05 4.508521488 -0.362288523 ALVLDCHYPEDEVGQEDEAES(ph)DIFSIR ddPTM_HeLa_CUDC101_4h_R1 2 ALVLDCHYPEDEVGQEDEAESDIFSIR 27 0 Q07021;I3L3Q7;I3L3B0 Q07021 C1QBP "Complement component 1 Q subcomponent-binding protein, mitochondrial" 1 0 ALVLDCHYPEDEVGQEDEAES(0.956)DIFS(0.044)IR;ALVLDCHYPEDEVGQEDEAES(0.695)DIFS(0.305)IR ; 141.84 2.33E-11 12603100 3282.3 3260.9 2630.1 2539.3 3715.3 3299.8 3366.6 3444.5 2387.6 2927.9 TRUE FALSE FALSE 2897.55377 3361.364464 2772.291162 2642.86363 3441.229721 3236.861813 3496.45089 3836.607957 2289.182117 2910.484721 0.995557114 1.154915688 0.952518713 0.908049306 1.182356223 1.112138397 1.201329409 1.318202404 0.786529509 1 11.50704373 -4.508085177 0.72792493 1.002036467 1.436455746 0.558229332 0.100911619 0.933326122 0.426294271 0.012223711 0.307909039 3.10E-05 4.508085177 0.43441928 VRVS(ph)PQDANPLMANGTLTR ddPTM_HeLa_CUDC101_4h_R1 4 VRVSPQDANPLMANGTLTR 19 1 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-4;O60716-6 O60716-5 CTNND1 Catenin delta-1 1 0 VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR;VRVS(1)PQDANPLMANGTLTR ;;; 102.21 0.00020444 109014000 4542.74 3890.44 3400.73 3895.59 4064.85 3688.37 3486.47 3147.42 3858.46 4079.17 TRUE FALSE FALSE 4010.246904 4010.299845 3584.58375 4054.468998 3764.994114 3618.020487 3620.944316 3505.70957 3699.412646 4054.906915 0.988986181 0.988999237 0.884011353 0.999892003 0.928503217 0.892257347 0.892978406 0.864559814 0.912329857 1 11.98545308 -4.507261142 0.313823605 1.003723039 0.769672229 0.334754344 0.04156998 2.53471097 0.202854308 0.012674805 0.221695424 3.11E-05 4.507261142 -0.23405081 YNAPTSHVT(ph)PSVK ddPTM_HeLa_CUDC101_4h_R1 1 YNAPTSHVTPSVK 13 0 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 YNAPTSHVT(0.977)PS(0.023)VK 84.195 0.0022767 0 6014.6 3827.8 4521.5 4406.9 5276 5263.8 4217.8 3530.5 4622.2 4305.3 TRUE FALSE FALSE 5309.577706 3945.729981 4765.945967 4586.63243 4886.799991 5163.401785 4380.481959 3932.397849 4431.67096 4279.691884 1.240644852 0.9219659 1.113618946 1.071720244 1.141857901 1.206489141 1.023550778 0.918850692 1.035511686 1 12.06329122 -4.507099348 5.367237338 1.106630539 0.939230997 0.243406205 0.090293744 0.186085007 16.60697045 0.014609088 0.071917494 3.11E-05 4.507099348 -0.167399541 VAAPQDGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 VAAPQDGSPR 10 0 Q9HD15 Q9HD15 SRA1 Steroid receptor RNA activator 1 1 0 VAAPQDGS(1)PR;VAAPQDGS(1)PR ; 128.57 0.0027388 95680000 9538.2 8158.3 8032.8 8171.4 8570.2 7443.2 6203.9 3501.1 9076.8 8671.3 TRUE FALSE FALSE 8420.146655 8409.647553 8467.077466 8504.665012 7937.99342 7301.233361 6443.186501 3899.651072 8702.650462 8619.722722 0.976846579 0.975628547 0.982291164 0.986651808 0.92091053 0.847038077 0.747493476 0.452410269 1.009620697 1 13.07342575 -4.047342358 0.863662755 0.987853526 1.05E-21 0.98822916 0.017950245 0.20305638 0.087277367 0.002687758 0.206799654 8.97E-05 4.047342358 -0.987853526 down RES(ph)FLYR ddPTM_HeLa_CUDC101_4h_R1 2 RESFLYR 7 1 Q08499-6;Q08499;Q08499-10;A0A087WSZ7;Q08499-11;Q08499-9;A0A1B0GW84;Q08499-2;Q08499-12;Q08499-7;A0A1W2PQN6;E9PMG3;Q07343-3;Q07343;B7Z6T1;V9GYP2;Q08493-3;Q08493-2;Q08493;P27815-6;P27815-2;P27815-7;P27815 Q08499-6;P27815-6 PDE4D;PDE4B;PDE4C;PDE4A "cAMP-specific 3,5-cyclic phosphodiesterase 4D;cAMP-specific 3,5-cyclic phosphodiesterase 4B;cAMP-specific 3,5-cyclic phosphodiesterase 4C;cAMP-specific 3,5-cyclic phosphodiesterase 4A" 1 0 RES(1)FLYR;RES(1)FLYR ; 65.157 0.038157 13843700 2347 1625.11 1670.57 2032.01 2103.18 2733.5 3547 4482.2 1688.1 2135.9 TRUE FALSE FALSE 2071.888218 1675.177713 1760.886067 2114.884151 1948.032602 2681.363042 3683.808978 4992.43553 1618.515803 2123.195572 0.975834843 0.788988888 0.829356509 0.996085419 0.917500313 1.262890276 1.735030455 2.351378082 0.762301799 1 11.05202155 -4.507032984 1.398348949 0.954615178 2.593575849 0.958661226 0.097739751 0.100027121 0.238211447 0.012841981 0.201437794 3.11E-05 4.507032984 1.63896067 up GPS(ph)WDPFR ddPTM_HeLa_CUDC101_4h_R1 4 GPSWDPFR 8 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR;GPS(1)WDPFR ;;; 122.94 0.0069061 425715200 29457 20925.9 14601.1 20321.4 22185.9 28696.6 35758.5 45123.1 15579.9 20130.4 TRUE FALSE FALSE 26004.09511 21570.60218 15390.47963 21150.19453 20549.29036 28149.26017 37137.71732 50259.73131 14937.68993 20010.66349 1.299511889 1.077955371 0.76911391 1.05694619 1.026916992 1.406712985 1.85589635 2.51164742 0.746486489 1 14.28848138 -4.505764092 1.482567722 1.097194994 2.723614602 0.884862158 0.174460409 0.175821903 0.48743447 0.024674254 0.365107065 3.12E-05 4.505764092 1.626419608 up T(ph)LTEPRT(ph)NLKLPKPPK ddPTM_HeLa_CUDC101_4h_R1 1 TLTEPRTNLKLPKPPK 16 3 O00481-4;O00481 O00481-4 BTN3A1 Butyrophilin subfamily 3 member A1 2 0 T(0.846)LT(0.196)EPRT(0.958)NLKLPKPPK 41.621 0.036354 756380000 3341 2977.4 3759.1 3654.6 3221.4 3347 2431.2 1702.4 3763.5 3285.9 TRUE FALSE FALSE 2949.373045 3069.130165 3962.328317 3803.650385 2983.76374 3283.161551 2524.972198 1896.194335 3608.366937 3266.355321 0.90295536 0.939619197 1.213073266 1.164493759 0.913484127 1.005145255 0.77302435 0.580522983 1.104707413 1 11.67346602 -4.502279871 2.303640936 0.986368057 0.56380115 0.638177216 0.106798863 0.208324119 1.793913081 0.015846444 0.142900094 3.15E-05 4.502279871 -0.422566907 MSS(ph)PLADAK ddPTM_HeLa_CUDC101_4h_R1 2 MSSPLADAK 9 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 MS(0.004)S(0.996)PLADAK;MS(0.03)S(0.97)PLADAK ; 138.76 0.0020299 110523000 14567.1 13457.8 13020.8 12977.1 14167.1 12861.7 10779.7 5614 14984.5 14402.2 TRUE FALSE FALSE 12859.56662 13872.41887 13724.74383 13506.36223 13122.02126 12616.3845 11195.47664 6253.075067 14366.83257 14316.53507 0.898231769 0.968978792 0.958663794 0.943409991 0.916564042 0.881245667 0.781996243 0.436772937 1.003513245 1 13.80539475 -4.046665513 1.212989996 0.950688628 2.59E-13 0.961706935 0.031278954 0.370104708 0.322579477 0.00572134 0.497930715 8.98E-05 4.046665513 -0.950688628 down TLS(ph)PTPSAEGYQDVR ddPTM_HeLa_CUDC101_4h_R1 3 TLSPTPSAEGYQDVR 15 0 O14639-3;O14639-5;J3QSX6;O14639-4;H0Y7N6;F6XFR5;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639;A0A494C1P1;A0A494C1G0 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 1 0 T(0.153)LS(0.847)PTPSAEGYQDVR;TLS(1)PTPSAEGYQDVR;T(0.357)LS(0.642)PT(0.001)PSAEGYQDVR ;; 209.22 1.74E-23 1580886000 5855.2 5671.28 5213.23 5261.96 5888.3 5096.56 4407.57 3492.01 5527.98 5735.4 TRUE FALSE FALSE 5168.862332 5846.005415 5495.072983 5476.565473 5453.93184 4999.351609 4577.571451 3889.526303 5300.114325 5701.285586 0.906613474 1.025383719 0.963830508 0.960584309 0.956614391 0.876881457 0.802901623 0.682219167 0.929634947 1 12.47707155 -4.502244668 1.155865618 0.962500508 0.616099961 0.891803013 0.03187235 0.303704802 0.437705586 0.00596256 0.113715218 3.15E-05 4.502244668 -0.346400547 (ac)S(ph)DAAVDTSSEITTK ddPTM_HeLa_CUDC101_4h_R1 4 SDAAVDTSSEITTK 14 0 B8ZZQ6;P06454-2;P06454 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 1 0 S(0.998)DAAVDT(0.001)S(0.001)SEITTK;S(1)DAAVDTSSEITTK;S(1)DAAVDTSSEITTK;S(1)DAAVDTSSEITTK ;;; 122.51 2.15E-16 460990000 14389.4 13093.4 11647.54 10816.6 13734.8 11990.8 14194.9 14972.91 13173.1 13996.4 TRUE FALSE FALSE 12702.69634 13496.79213 12277.24124 11257.7477 12721.61117 11762.09547 14742.40205 16677.36555 12630.09924 13913.14879 0.912999389 0.970074592 0.882420035 0.809144491 0.914358882 0.845394213 1.059602127 1.198676576 0.907781512 1 13.76416134 -4.501196687 3.939709997 0.933505901 1.181732536 0.70731164 0.058400442 0.110033689 3.649245066 0.009535005 0.054364989 3.15E-05 4.501196687 0.248226635 NLS(ph)FNELYPSGTLK ddPTM_HeLa_CUDC101_4h_R1 1 NLSFNELYPSGTLK 14 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 NLS(0.913)FNELYPS(0.087)GTLK 153.48 0.0001394 38347000 3236.4 2270.5 1978.4 1937.9 2557 2574.6 1843.4 1058.8 2591.5 3242.6 TRUE FALSE FALSE 2857.034098 2340.451414 2085.358288 2016.935938 2368.375204 2525.493795 1914.500555 1179.329512 2484.677273 3223.312871 0.88636574 0.726101222 0.646961177 0.625733839 0.734764293 0.783508736 0.593954305 0.365874974 0.770845826 1 11.65432852 -4.500424507 0.15243362 1.128497132 3.25E-12 0.481900366 0.117841547 8.157024219 0.233846353 0.312717121 1.910948189 3.16E-05 4.500424507 -1.128497132 SPEKIEEVLSPEGS(ph)PSKSPSK ddPTM_HeLa_CUDC101_4h_R1 1 SPEKIEEVLSPEGSPSKSPSK 21 2 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 SPEKIEEVLS(0.016)PEGS(0.361)PS(0.279)KS(0.279)PS(0.065)K 45.347 0.032228 88999000 1551.7 1634.6 1699.7 1595.1 2008.9 1458.6 2011.8 2299.3 1917 1796.4 TRUE FALSE FALSE 1369.812078 1684.960089 1791.590923 1660.155073 1860.707449 1430.779635 2089.3958 2561.043018 1837.980449 1785.714933 0.767094486 0.943577308 1.003290553 0.929686504 1.041995794 0.801236305 1.170061224 1.43418357 1.029268678 1 10.80228608 -4.499966355 3.151425287 0.908834203 1.42134138 0.728248578 0.093325027 0.105223413 1.953227778 0.014820086 0.098810584 3.16E-05 4.499966355 0.512507176 EMDTART(ph)PLSEAEFEEIMNR ddPTM_HeLa_CUDC101_4h_R1 3 EMDTARTPLSEAEFEEIMNR 20 1 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 0 EMDT(0.298)ART(0.702)PLSEAEFEEIMNR;EMDT(0.008)ART(0.992)PLSEAEFEEIMNR;EMDT(0.001)ART(0.999)PLSEAEFEEIMNR ;; 144.3 2.78E-05 72464000 3815.98 3329.58 3086.21 3554.02 4146.24 3669.3 4363.3 4509.1 4476 3709.95 TRUE FALSE FALSE 3368.676609 3432.160413 3253.059848 3698.968297 3840.380136 3599.314216 4531.593943 5022.397718 4291.497385 3687.883052 0.913444532 0.930658691 0.882094091 1.003005856 1.041350846 0.975983827 1.228779188 1.361864692 1.16367502 1 11.84857719 -4.499009762 1.337269972 0.955137607 1.458156229 0.695012815 0.080691322 0.213565373 0.448200206 0.007659032 0.128646089 3.17E-05 4.499009762 0.503018622 SSDQPLTVPVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 SSDQPLTVPVSPK 13 0 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 0 SSDQPLTVPVS(1)PK;SSDQPLT(0.008)VPVS(0.992)PK;SSDQPLT(0.009)VPVS(0.991)PK;SSDQPLTVPVS(1)PK ;;; 202.32 7.16E-17 1412440000 31845.3 29575.7 27863 27508.8 27716.3 24012.4 22018 11133.2 29568.8 29966.2 TRUE FALSE FALSE 28112.44221 30486.89226 29369.35806 28630.72777 25671.72377 23554.40348 22867.24164 12400.55849 28349.96155 29787.95971 0.943751854 1.023463593 0.985947287 0.961151017 0.861815445 0.79073571 0.767667268 0.416294322 0.951725523 1 14.86244169 -4.046073624 0.758591344 0.977826972 2.55E-13 0.936335408 0.043483167 0.581016133 0.191059062 0.00713376 0.518611421 8.99E-05 4.046073624 -0.977826972 down ADNSSDS(ph)PTTLK ddPTM_HeLa_CUDC101_4h_R1 2 ADNSSDSPTTLK 12 0 A0A2R8YH03;Q5VWN6;J3KPH3 A0A2R8YH03 FAM208B Protein FAM208B 1 0 ADNSSDS(0.994)PT(0.003)T(0.003)LK;ADNS(0.001)S(0.012)DS(0.67)PT(0.288)T(0.029)LK ; 181.75 1.56E-10 11808700 3102.3 2885.1 2978.5 2958.2 3694.7 2870.5 2295.4 1487.3 3641.1 3532.3 TRUE FALSE FALSE 2738.653097 2973.986511 3139.526719 3078.848182 3422.149342 2815.749995 2383.934347 1656.60822 3491.012317 3511.289723 0.779956459 0.846978389 0.894123518 0.876842535 0.974613208 0.801913319 0.678934106 0.471794797 0.994225083 1 11.77778533 -4.497986086 1.629202845 0.893004892 0.420472522 0.805430112 0.068016065 0.266582425 0.937608961 0.012554316 0.171229265 3.18E-05 4.497986086 -0.47253237 QILIACS(ph)PVSSVR ddPTM_HeLa_CUDC101_4h_R1 4 QILIACSPVSSVR 13 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 QILIACS(0.877)PVS(0.111)S(0.012)VR;QILIACS(0.997)PVS(0.003)SVR;QILIACS(0.991)PVS(0.009)SVR;QILIACS(0.999)PVS(0.001)SVR ;;; 184 6.44E-11 361801000 12533.4 11229.8 9480.8 9600.5 10558 8826.4 7839.3 5792.1 11650.6 8593.4 TRUE FALSE FALSE 11064.25385 11575.77683 9993.360726 9992.049887 9779.157375 8658.051126 8141.664427 6451.449252 11170.35734 8542.286075 1.295233355 1.355114629 1.169869592 1.169716139 1.144793945 1.013551999 0.953101354 0.755236853 1.307654326 1 13.0604065 -4.497933824 1.088791572 1.165516429 0.659537212 0.667076009 0.102127256 0.772174369 0.949534564 0.019983686 0.405252975 3.18E-05 4.497933824 -0.505979217 NHLLQFALES(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 2 NHLLQFALESPAK 13 0 Q9NS91;F8WE49 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 NHLLQFALES(1)PAK;NHLLQFALES(1)PAK ; 128.82 0.00082269 53675000 5589.5 4812.4 4807.1 4722 4014.5 4683 3840.2 2860.3 4565 6249.64 TRUE FALSE FALSE 4934.307283 4960.66434 5066.986367 4914.58357 3718.358333 4593.679577 3988.3178 3185.90499 4376.828768 6212.466863 0.79425893 0.798501537 0.815615838 0.79108407 0.598531697 0.739429228 0.641986169 0.512824464 0.704523479 1 12.60095054 -4.496466603 0.093570137 1.250352448 4.17E-15 0.346003732 0.103810283 14.93547059 0.246964259 0.871146737 2.854560463 3.19E-05 4.496466603 -1.250352448 TSS(ph)LTQFPPSQSEER ddPTM_HeLa_CUDC101_4h_R1 9 TSSLTQFPPSQSEER 15 0 B7Z7F3;Q9H6Z4-3;Q9H6Z4-2;Q9H6Z4 B7Z7F3 RANBP3 Ran-binding protein 3 1 0 T(0.003)S(0.048)S(0.622)LT(0.326)QFPPSQSEER;T(0.004)S(0.149)S(0.846)LTQFPPSQSEER;TS(0.011)S(0.921)LT(0.068)QFPPSQSEER;T(0.001)S(0.015)S(0.953)LT(0.032)QFPPSQSEER;T(0.001)S(0.005)S(0.994)LTQFPPSQSEER;T(0.053)S(0.01)S(0.666)LT(0.271)QFPPSQSEER;TS(0.004)S(0.994)LT(0.002)QFPPSQSEER;TS(0.004)S(0.989)LT(0.007)QFPPSQSEER;TS(0.003)S(0.617)LT(0.379)QFPPSQSEER ;;;;;;;; 186.69 7.19E-11 120745500 15640.76 14508.9 15294.1 14746 18092.5 18856.7 19183.1 20781 16116.9 17370 TRUE FALSE FALSE 13807.37382 14955.90201 16120.94531 15347.40562 16757.85232 18497.03986 19922.99859 23146.62504 15452.55456 17266.68247 0.799654123 0.866171139 0.933644627 0.888845072 0.9705311 1.071256155 1.153840561 1.340536903 0.894934773 1 14.0757033 -4.496424472 0.905329739 0.899822561 1.477173181 0.891518044 0.050034862 0.541115282 0.416430631 0.012172378 0.282461933 3.19E-05 4.496424472 0.577350619 SLS(ph)SPTVTLSAPLEGAK ddPTM_HeLa_CUDC101_4h_R1 1 SLSSPTVTLSAPLEGAK 17 0 A0A1B0GVY1;Q96PU5-9;Q96PU5-4;Q96PU5-2;Q96PU5-6;Q96PU5-5;Q96PU5-7;Q96PU5 A0A1B0GVY1 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.062)LS(0.469)S(0.469)PTVTLSAPLEGAK 331.48 2.26E-191 422560000 3008.4 2940 2510.2 2643 2517.2 2330.3 2863.5 3085.5 2289.7 2435.1 TRUE FALSE FALSE 2655.759912 3030.577915 2645.909005 2750.792964 2331.511171 2285.85341 2973.946154 3436.740848 2195.317597 2420.615917 1.097142217 1.251986279 1.093072629 1.13640208 0.963189226 0.944327183 1.22859068 1.419779497 0.906925209 1 11.24115847 -4.494692682 3.847007076 1.060086735 1.398569036 0.584593191 0.098452111 0.114399225 3.50421191 0.012977878 0.076456154 3.20E-05 4.494692682 0.338482301 ESSTSEGADQKMS(ph)SPEDDSDTKR ddPTM_HeLa_CUDC101_4h_R1 2 ESSTSEGADQKMSSPEDDSDTKR 23 2 Q15424-2;Q15424;Q15424-4;Q15424-3 Q15424-2 SAFB Scaffold attachment factor B1 1 0 ESSTS(0.001)EGADQKMS(0.785)S(0.213)PEDDSDTKR;ESSTS(0.001)EGADQKMS(0.795)S(0.201)PEDDS(0.001)DTKR ; 88.071 0.0002546 63634000 4629 4468.1 4688 4550.7 5213.1 4282.2 4951.7 5181.2 4565.3 4968.7 TRUE FALSE FALSE 4086.395637 4605.756865 4941.44746 4736.297216 4828.539999 4200.52417 5142.688728 5771.006865 4377.116402 4939.145951 0.82734863 0.932500661 1.000465973 0.958930403 0.97760626 0.850455567 1.041210116 1.168422015 0.886209163 1 12.27004589 -4.493506067 3.724928828 0.927209277 1.155740243 0.633498381 0.057175244 0.137645934 3.86272043 0.010192473 0.061407808 3.21E-05 4.493506067 0.228530965 STVTGERQS(ph)GDGQESTEPVENK ddPTM_HeLa_CUDC101_4h_R1 4 STVTGERQSGDGQESTEPVENK 22 1 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 0 STVTGERQS(1)GDGQESTEPVENK;STVTGERQS(0.999)GDGQES(0.001)TEPVENK;STVTGERQS(0.998)GDGQES(0.001)TEPVENK;STVT(0.003)GERQS(0.986)GDGQES(0.007)T(0.003)EPVENK ;;; 137.41 2.27E-07 572675000 12549.1 11987.5 11117.2 11020.5 12203.1 11188.1 11973.3 12264.9 11227.6 11013.4 TRUE FALSE FALSE 11078.11352 12356.82067 11718.22946 11469.96362 11302.90163 10974.70563 12435.11419 13661.08664 10764.79358 10947.89181 1.011894684 1.12869408 1.070364018 1.047686973 1.032427231 1.002449223 1.13584555 1.247828064 0.98327548 1 13.41836546 -4.493278297 2.633105784 1.023814302 1.250737781 0.719094884 0.041569866 0.130967864 1.555160852 0.006403581 0.051325492 3.21E-05 4.493278297 0.22692348 AEPYVAS(ph)EYK ddPTM_HeLa_CUDC101_4h_R1 1 AEPYVASEYK 10 0 A0A088AWN3;A0A0A0MSY4;Q9BZ29-3;Q9BZ29-5;Q9BZ29;Q9BZ29-4;A0A0A0MT38;Q6ZSL5;Q9BZ29-6 A0A088AWN3 DOCK9 Dedicator of cytokinesis protein 9 1 0 AEPYVAS(1)EYK 87.667 0.03201 6193100 1123.6 847.13 926.44 647.86 868.23 1269 1467.9 1923.4 798.48 788.78 TRUE FALSE FALSE 991.8933113 873.2290712 976.5261487 674.2825311 804.1824027 1244.795939 1524.517395 2142.352081 765.5663164 784.0883015 1.265027561 1.113687157 1.245428795 0.859957392 1.025627345 1.587571115 1.944318506 2.732284205 0.97637768 1 9.614872325 -4.492213394 1.333987291 1.11039388 3.02914946 0.933367558 0.141280208 0.169861189 0.351374061 0.022769432 0.390923156 3.22E-05 4.492213394 1.918755579 up KPSQTAS(ph)YER ddPTM_HeLa_CUDC101_4h_R1 1 KPSQTASYER 10 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 KPS(0.009)QT(0.091)AS(0.9)YER 84.734 0.019425 67709000 3871.9 2386.4 3726.4 3461.7 2792.9 2202.1 2336.8 1069.5 3553.8 4236.1 TRUE FALSE FALSE 3418.041751 2459.922155 3927.860456 3602.883089 2586.873331 2160.098611 2426.931159 1191.247557 3407.31086 4210.903489 0.811712204 0.584179182 0.932783301 0.855608089 0.614327386 0.512977468 0.576344522 0.282895953 0.809163845 1 12.03991409 -4.492098376 0.272954451 0.971969124 9.71E-25 0.649501111 0.123868131 3.266690961 0.206465154 0.07126586 1.05293615 3.22E-05 4.492098376 -0.971969124 SRS(ph)TTELDDYSTNK ddPTM_HeLa_CUDC101_4h_R1 1 SRSTTELDDYSTNK 14 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 S(0.224)RS(0.77)T(0.006)TELDDYSTNK 268.08 6.93E-71 195940000 5244 4580.4 4287.3 4002.2 4198.5 4530.4 4986.4 5283.3 4878 4649.5 TRUE FALSE FALSE 4629.306269 4721.516695 4519.084406 4165.427015 3888.78502 4443.990168 5178.727118 5884.729516 4676.926775 4621.844567 1.001614442 1.021565443 0.977766418 0.90124775 0.841392427 0.961518741 1.120489243 1.273242627 1.011917798 1 12.17425303 -4.491770899 2.812024403 0.980219232 1.271781769 0.758560001 0.055034189 0.127927289 1.780663286 0.008761406 0.066090115 3.22E-05 4.491770899 0.291562536 EGLSGDALSSPSAPEPVVGT(ph)PDDKLDADYIKR ddPTM_HeLa_CUDC101_4h_R1 1 EGLSGDALSSPSAPEPVVGTPDDKLDADYIKR 32 2 K7EJ08;Q92503-3;Q92503;Q92503-2 K7EJ08 SEC14L1 SEC14-like protein 1 1 0 EGLSGDALSSPS(0.001)APEPVVGT(0.999)PDDKLDADYIKR 121.84 1.06E-14 85935000 9155.7 8135.6 8062.2 7784.9 9298.6 6809.9 5826 3653.4 8269.5 7253.6 TRUE FALSE FALSE 8082.482725 8386.248193 8498.066919 8102.401871 8612.660803 6680.012504 6050.710772 4069.288288 7928.62771 7210.455265 1.120939307 1.163067779 1.178575639 1.123701843 1.194468378 0.926434221 0.839157938 0.564359411 1.09960154 1 12.81587464 -4.491644633 1.489841003 1.087770337 0.49163453 0.867914657 0.068262934 0.245387082 0.677439906 0.012301926 0.188752392 3.22E-05 4.491644633 -0.596135807 DAS(ph)EETSTSVMQK ddPTM_HeLa_CUDC101_4h_R1 1 DASEETSTSVMQK 13 0 M0QZH1;M0QX70;M0QYR7;M0R2N0;M0QZC7;Q9H0W8-2;Q9H0W8 M0QZH1 SMG9 Protein SMG9 1 0 DAS(0.88)EET(0.119)STSVMQK 188.13 3.58E-11 12833000 1263.4 1259.5 1203.6 995.8 1390.6 1255.7 1671.9 1984.6 1644.1 1324.4 TRUE FALSE FALSE 1115.306167 1298.303702 1268.670257 1036.413028 1288.018208 1231.749615 1736.385743 2210.518842 1576.329502 1316.52241 0.847160792 0.986161491 0.96365261 0.787235387 0.978348867 0.935608544 1.318918486 1.679059031 1.197343464 1 10.36251636 -4.490067222 2.029549075 0.924475682 1.738533177 0.814381017 0.10800466 0.091383787 0.563312744 0.010617893 0.114839441 3.24E-05 4.490067222 0.814057495 SAQGSSS(ph)PVPSMVQK ddPTM_HeLa_CUDC101_4h_R1 2 SAQGSSSPVPSMVQK 15 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 SAQGS(0.001)S(0.249)S(0.75)PVPS(0.001)MVQK;SAQGSS(0.002)S(0.995)PVPS(0.002)MVQK ; 239.33 1.44E-43 131689000 13542.7 11280.4 11666.7 10281 11201.2 9700.4 8890.9 6434 12024.7 11008.6 TRUE FALSE FALSE 11955.24524 11627.93575 12297.43709 10700.30362 10374.90979 9515.381032 9233.824991 7166.420553 11529.03678 10943.12036 1.092489605 1.062579536 1.123759649 0.977811014 0.948076001 0.869530876 0.843801831 0.654879076 1.053541988 1 13.41773655 -4.489543524 0.731606498 1.050993375 0.52191682 0.896802384 0.043149423 0.56228745 0.256010188 0.008734786 0.228046724 3.24E-05 4.489543524 -0.529076556 FNGGHS(ph)PTHSPEK ddPTM_HeLa_CUDC101_4h_R1 1 FNGGHSPTHSPEK 13 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 0 FNGGHS(0.871)PT(0.127)HS(0.002)PEK 68.845 0.035154 113500000 3961.2 3148.8 3489.4 3198.9 3175.9 3088.5 3607.4 3835.4 3177.6 3125.7 TRUE FALSE FALSE 3496.874141 3245.810796 3678.047519 3329.364969 2941.620184 3029.592008 3746.538626 4272.006433 3046.617983 3107.108197 1.125443312 1.044640415 1.183752636 1.071531713 0.946738896 0.975051983 1.205795997 1.374913959 0.980531668 1 11.60135677 -4.488753727 3.521101063 1.056808095 1.361317353 0.685821798 0.07108662 0.115062601 2.769521083 0.010619668 0.067218016 3.25E-05 4.488753727 0.304509259 LPNS(ph)IASR ddPTM_HeLa_CUDC101_4h_R1 2 LPNSIASR 8 0 Q9ULT0;Q9ULT0-4;G5E9G4;H7C055 Q9ULT0 TTC7A Tetratricopeptide repeat protein 7A 1 0 LPNS(0.5)IAS(0.5)R;LPNS(0.997)IAS(0.003)R ; 107.03 0.01297 35319000 2697.7 2399.8 2129.25 2506.9 3095.1 2925.2 3313.6 3521.7 2050.6 2787.6 TRUE FALSE FALSE 2381.479695 2473.734994 2244.363696 2609.142218 2866.780639 2869.406684 3441.406662 3922.596093 1966.0734 2771.019231 0.859423734 0.892716646 0.80994158 0.94158214 1.03455819 1.035505871 1.241928105 1.415578805 0.709512723 1 11.43620101 -4.488704096 1.01004842 0.920435747 1.572506577 0.809375927 0.086059731 0.371478476 0.373578968 0.010851758 0.238586977 3.25E-05 4.488704096 0.65207083 S(ph)SSVT(ph)SIDKESR ddPTM_HeLa_CUDC101_4h_R1 1 SSSVTSIDKESR 12 1 H0Y332;Q5T5C0-3;Q5T5C0-2;Q5T5C0;Q5JRH0 H0Y332 STXBP5 Syntaxin-binding protein 5 2 0 S(0.624)S(0.022)S(0.382)VT(0.83)S(0.141)IDKESR 149.69 0.0056962 67131000 10452 7993.6 9169.3 8593.6 9708.2 9152.5 9096.8 8874.2 8977.3 8909.7 TRUE FALSE FALSE 9226.832404 8239.873341 9665.020094 8944.084153 8992.045427 8977.931312 9447.666623 9884.403057 8607.251894 8856.704708 1.041790678 0.930354304 1.091265929 1.009865909 1.01528116 1.013687552 1.066724807 1.116036199 0.971834579 1 13.1125543 -4.488604835 2.382859553 1.017393001 1.119665349 0.412956836 0.040221415 0.265894348 2.455497409 0.005012434 0.045289266 3.25E-05 4.488604835 0.102272348 ECSEAMEVETSVISIDS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 4 ECSEAMEVETSVISIDSPQK 20 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ECSEAMEVET(0.007)S(0.006)VIS(0.009)IDS(0.977)PQK;ECSEAMEVET(0.016)S(0.038)VIS(0.024)IDS(0.922)PQK;ECSEAMEVETSVISIDS(1)PQK;ECSEAMEVETSVIS(0.007)IDS(0.993)PQK ;;; 244.22 8.47E-57 85809100 17428.1 13531.3 12607.3 12236 13599.2 13820.7 11400.38 10602.3 15488 11376.1 TRUE FALSE FALSE 15385.20454 13948.18331 13288.88877 12735.03697 12596.01411 13557.09317 11840.09648 11809.22298 14849.57808 11308.43445 1.360507027 1.233431858 1.175130725 1.126153848 1.113860116 1.198847925 1.047014644 1.044284514 1.31314181 1 13.46511159 -4.488414465 1.030518056 1.175863748 0.985202891 0.224933508 0.098744077 2.399370153 2.538221709 0.021094701 0.457420101 3.25E-05 4.488414465 -0.190660857 DKS(ph)FDDEESVDGNRPSSAASAFK ddPTM_HeLa_CUDC101_4h_R1 3 DKSFDDEESVDGNRPSSAASAFK 23 2 E7ERI8;E7EW49;O75122-3 E7ERI8 CLASP2 CLIP-associating protein 2 1 0 DKS(0.998)FDDEES(0.002)VDGNRPSSAASAFK;DKS(0.995)FDDEES(0.005)VDGNRPSSAASAFK;DKS(0.9)FDDEES(0.077)VDGNRPS(0.01)S(0.013)AASAFK ;; 90.757 0.00019307 68505000 6359.6 5205.56 5013.36 5380.02 5545.8 4882.06 4509.48 3815.84 5584.2 4235.09 TRUE FALSE FALSE 5614.137329 5365.937133 5284.397406 5599.44047 5136.697383 4788.94284 4683.412154 4250.219801 5354.016912 4209.899496 1.333556142 1.274599818 1.25523125 1.330065118 1.220147271 1.13754327 1.112476 1.009577498 1.271768344 1 12.03957008 -4.487177134 1.637860137 1.193262639 0.990324373 0.306009946 0.097309738 1.028455876 3.619418646 0.02044723 0.286393251 3.26E-05 4.487177134 -0.202938266 VS(ph)PQPMISR ddPTM_HeLa_CUDC101_4h_R1 1 VSPQPMISR 9 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 VS(0.994)PQPMIS(0.006)R 84.188 0.036867 16485000 814.41 832.19 593 680.96 735.39 688.55 470.79 273.31 538.47 634.68 TRUE FALSE FALSE 718.9460944 857.8287875 625.0593737 708.7324922 681.1417448 675.417056 488.948528 304.4225056 516.2740387 630.9048951 1.139547497 1.359680031 0.990734703 1.123358683 1.07962666 1.070552885 0.774995616 0.482517267 0.818307232 1 9.301278734 -4.485645781 1.978217122 1.090443268 0.429293825 0.675801758 0.130376571 0.169450703 0.972881494 0.015156161 0.17121947 3.27E-05 4.485645781 -0.661149443 SAAEMYGSSFDLDYDFQR ddPTM_HeLa_CUDC101_4h_R1 1 SAAEMYGSSFDLDYDFQR 18 0 P07910-2;G3V4C1;B2R5W2;G3V2D6;P07910-4;B4DY08;G3V4W0;G3V251;G3V3K6;G3V5X6 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 0 162.48 0.00010828 5268500 994.04 925.34 883.88 701.76 871.92 1022.6 826.54 659.28 1051.4 867.95 FALSE FALSE TRUE 877.5201381 953.8486286 931.6652264 730.3808061 807.6001987 1003.095609 858.4199247 734.3297703 1008.060847 862.7873948 1.017075752 1.105543074 1.079831755 0.84653625 0.936036159 1.162622003 0.994937953 0.851113235 1.168376883 1 9.752861289 SNSS(ph)SEAVLGQEELSAQAK ddPTM_HeLa_CUDC101_4h_R1 1 SNSSSEAVLGQEELSAQAK 19 0 A0A1B0GTL5;Q9BXF6 A0A1B0GTL5;Q9BXF6 RAB11FIP5 Rab11 family-interacting protein 5 1 0 S(0.001)NS(0.254)S(0.739)S(0.006)EAVLGQEELSAQAK 277.64 5.94E-87 47587000 3641.9 2775.4 3324.4 3042.8 3512.4 3532.5 3509.8 3512.4 3460 3774 TRUE FALSE FALSE 3215.002003 2860.906784 3504.12712 3166.898536 3253.29725 3465.123448 3645.174162 3912.237418 3317.377336 3751.55208 0.856979174 0.762592848 0.934047308 0.84415689 0.867187015 0.923650632 0.971644291 1.042831696 0.884267968 1 11.87327187 -4.485522131 2.087051848 0.907310892 1.050985178 0.366689042 0.062491679 0.529110606 3.484966249 0.011251571 0.11939977 3.27E-05 4.485522131 0.143674286 S(ph)SPADAPDIDKLK ddPTM_HeLa_CUDC101_4h_R1 1 SSPADAPDIDKLK 13 1 Q96AY4;A0A087WW06 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 0 S(0.5)S(0.5)PADAPDIDKLK 63.754 0.038477 7980900 1804.3 1937 1717.5 1472 2092.7 1745.2 1426.3 1075.4 1681 1835.9 TRUE FALSE FALSE 1592.802689 1996.676674 1810.353245 1532.034523 1938.32569 1711.913218 1481.312869 1197.819189 1611.708468 1824.979985 0.872778169 1.094081409 0.99198526 0.839480178 1.062107917 0.938044927 0.811687186 0.65634648 0.883137613 1 10.83366493 -4.48262559 2.233963039 0.955334731 0.641584639 0.61010476 0.077354522 0.217443872 1.696797828 0.011215865 0.110945599 3.29E-05 4.48262559 -0.313750092 QEQINTEPLEDTVLS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 2 QEQINTEPLEDTVLSPTK 18 0 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 QEQINTEPLEDT(0.074)VLS(0.827)PT(0.099)K;QEQINTEPLEDTVLS(0.885)PT(0.115)K ; 229.37 8.71E-34 203310000 12353.7 12481.5 11623.4 10716 12801.9 10061 8851 4824.8 13527.2 14002 TRUE FALSE FALSE 10905.61801 12866.04022 12251.79616 11153.0448 11857.52934 9869.103188 9192.386035 5374.035729 12969.60309 13918.71548 0.783521872 0.924369798 0.880238998 0.801298425 0.851912618 0.709052728 0.660433504 0.386101414 0.931810346 1 13.76473845 -4.04354262 0.652520235 0.898463711 1.34E-23 0.875051473 0.059233338 1.360709876 0.329204475 0.014389037 0.968172512 9.05E-05 4.04354262 -0.898463711 down QSFDDNDSEELEDKDS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 QSFDDNDSEELEDKDSK 17 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 QSFDDNDS(0.146)EELEDKDS(0.854)K 74.783 0.010885 163840000 4854.9 4001.3 4246.8 3811.3 4927 4488.5 4582.4 4540.2 4795.6 4483.6 TRUE FALSE FALSE 4285.815982 4124.57531 4476.394854 3966.741288 4563.545026 4402.889341 4759.144703 5057.038016 4597.923338 4456.931348 0.96160691 0.925429402 1.004367019 0.890016242 1.023920871 0.987874615 1.067807496 1.134645706 1.03163432 1 12.12183502 -4.482052834 1.432577047 0.973964343 1.166420261 0.612105089 0.041088158 0.358165737 0.88188168 0.005295861 0.087143628 3.30E-05 4.482052834 0.192455919 LKTEEGEIDYS(ph)AEEGENRR ddPTM_HeLa_CUDC101_4h_R1 1 LKTEEGEIDYSAEEGENRR 19 2 B7WPG3;V9GYK2;Q8WVV9-2;Q8WVV9-5;Q8WVV9;C9IYN3;Q8WVV9-3;Q8WVV9-4 B7WPG3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 1 0 LKTEEGEIDY(0.142)S(0.858)AEEGENRR 57.227 0.033262 27486000 1344.1 1285.8 1068.7 1156.3 1654.6 1540.4 1582.9 1740.2 1455.1 1468.3 TRUE FALSE FALSE 1186.546636 1325.413974 1126.477155 1203.458912 1532.543454 1511.019436 1643.952983 1938.297334 1395.120162 1459.566486 0.81294456 0.908087426 0.77178886 0.824531752 1.049999071 1.035252214 1.126329632 1.327995232 0.955845571 1 10.51132421 -4.481947085 0.941821435 0.895898351 1.451559257 0.766217603 0.076760094 0.664110895 0.556257031 0.014747377 0.345647292 3.30E-05 4.481947085 0.555660906 S(ph)KSATLLYDQPLQVFTGSSSSSDLISGTK ddPTM_HeLa_CUDC101_4h_R1 1 SKSATLLYDQPLQVFTGSSSSSDLISGTK 29 1 Q96RT1-7;Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8 Q96RT1-7 ERBB2IP Protein LAP2 1 0 S(0.413)KS(0.413)AT(0.174)LLY(0.001)DQPLQVFTGSSSSSDLISGTK 104.13 1.11E-09 12409000 688 730.42 742.43 611.19 999.21 834.67 941.18 986.66 698.19 810.86 TRUE FALSE FALSE 607.3536829 752.9233744 782.5680115 636.11697 925.500269 818.7500604 977.4816279 1098.977386 669.4103127 806.0369687 0.753505989 0.934105263 0.970883523 0.789190812 1.148210696 1.015772343 1.212700739 1.36343298 0.830495795 1 9.654702199 -4.481861275 0.725563345 0.88578706 1.562421742 0.726286967 0.096274063 0.989593871 0.439016925 0.019216171 0.511001451 3.30E-05 4.481861275 0.676634682 GNNFNHIS(ph)PIPPVPHPR ddPTM_HeLa_CUDC101_4h_R1 2 GNNFNHISPIPPVPHPR 17 0 S4R313;Q9NP74-2;Q9NP74;Q9NP74-3 S4R313 PALMD Palmdelphin 1 0 GNNFNHIS(1)PIPPVPHPR;GNNFNHIS(1)PIPPVPHPR ; 102.67 0.0015627 25160000 5652.1 5270.3 4302.5 4858 5265.6 4708 3939.7 3089 5237.2 4806.6 TRUE FALSE FALSE 4989.569406 5432.671696 4535.106164 5056.130238 4877.167179 4618.202744 4091.655549 3440.639274 5021.320399 4778.010129 1.044277695 1.137015525 0.949162108 1.058208355 1.020752792 0.966553569 0.856351376 0.720098782 1.050922929 1 12.2221942 -4.481203936 1.358782799 1.028307211 0.656846026 0.83537905 0.045536634 0.251983383 0.539781782 0.006565638 0.114283599 3.30E-05 4.481203936 -0.371461185 APSTSPS(ph)FEGTQETYTVAHEENVR ddPTM_HeLa_CUDC101_4h_R1 2 APSTSPSFEGTQETYTVAHEENVR 24 0 Q9BUT9 Q9BUT9 FAM195A Protein FAM195A 1 0 APS(0.001)T(0.006)S(0.03)PS(0.962)FEGTQETYTVAHEENVR;APS(0.003)T(0.015)S(0.112)PS(0.871)FEGTQETYTVAHEENVR ; 216.64 1.11E-28 19387800 2091.4 1634.06 1151.22 1359.04 1384.96 1442.91 2090.65 2470.19 1796.44 1794.45 TRUE FALSE FALSE 1846.249262 1684.403452 1213.458435 1414.467525 1282.79426 1415.388896 2171.287071 2751.386445 1722.389983 1783.776532 1.035022734 0.944290623 0.680274919 0.792962291 0.71914516 0.793478819 1.21724164 1.542450187 0.965586189 1 10.80071917 -4.480822902 3.408153558 0.938962485 1.521664954 0.707355705 0.132949805 0.136047723 2.975464171 0.022848682 0.151150465 3.31E-05 4.480822902 0.58270247 SAATWDER ddPTM_HeLa_CUDC101_4h_R1 1 SAATWDER 8 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 148.99 0.016842 13717000 3287.9 2633.5 2863.5 2832.7 2724.7 2769.2 2750.5 3002.3 2707.9 2555.4 FALSE FALSE TRUE 2902.497346 2714.635014 3018.309472 2948.22975 2523.704309 2716.382124 2856.587706 3344.069696 2596.279216 2540.200367 1.142625355 1.068669641 1.188217083 1.160628818 0.993506001 1.069357425 1.124552119 1.316459024 1.022076545 1 11.31072658 -13.52287875 0.242781328 0.207253199 1.144176684 0.276867692 0.080370154 47.96707193 0.628804743 18.16589503 0.052014935 3.00E-14 13.52287875 0.936923485 GITEECLKQPS(ph)LEQK ddPTM_HeLa_CUDC101_4h_R1 1 GITEECLKQPSLEQK 15 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 GITEECLKQPS(1)LEQK 79.92 0.011585 4696600 1570.4 1370.3 1340.7 1443.1 1805.9 1488.9 1888 2125.2 1749.9 1607.1 TRUE FALSE FALSE 1386.320093 1412.517319 1413.182297 1501.955856 1672.682355 1460.501713 1960.820792 2367.124178 1677.768381 1597.540898 0.867783789 0.884182258 0.88459851 0.94016739 1.047035702 0.914218669 1.227399433 1.481729939 1.050219361 1 10.64163715 -4.480572264 1.984093852 0.933398458 1.534988271 0.867023513 0.066725551 0.117359553 0.674867166 0.009485398 0.108455631 3.31E-05 4.480572264 0.601589813 RPS(ph)QGPPAR ddPTM_HeLa_CUDC101_4h_R1 2 RPSQGPPAR 9 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RPS(1)QGPPAR;RPS(1)QGPPAR ; 68.786 0.037009 8341700 618.78 330.15 710.6 439.97 622.77 572.98 374.149 195.646 586.11 622.64 TRUE FALSE FALSE 546.2475464 340.3215302 749.0171854 457.9138783 576.8294978 562.0513611 388.5800523 217.9175498 561.9502977 618.9365096 0.882558288 0.549848853 1.210168044 0.739839824 0.93196877 0.90809211 0.627818922 0.352083851 0.907928825 1 9.273647615 -4.479746902 2.018935689 0.918583806 0.303322271 0.522660494 0.162185216 0.25641159 1.540562406 0.02178886 0.244690477 3.31E-05 4.479746902 -0.615261535 TQTGDSS(ph)SISSFSYR ddPTM_HeLa_CUDC101_4h_R1 2 TQTGDSSSISSFSYR 15 0 A0A087WXA6;A0A087WT45;Q4V328-4;Q4V328;Q4V328-3;Q4V328-2 A0A087WXA6 GRIPAP1 GRIP1-associated protein 1 1 0 TQT(0.003)GDS(0.044)S(0.476)S(0.476)ISSFSYR;TQTGDS(0.12)S(0.44)S(0.44)ISSFSYR ; 244.18 1.44E-55 130481000 5294.1 4403.9 4417.7 4542.9 5262.9 4645.2 5296.2 5661.3 4344.7 4526.6 TRUE FALSE FALSE 4673.533623 4539.578939 4656.534225 4728.179098 4874.666352 4556.600549 5500.476208 6305.759508 4165.609627 4499.675582 1.038637906 1.008868052 1.034859989 1.05078222 1.08333729 1.012650905 1.222416174 1.40138092 0.925757769 1 12.13560527 -4.479524892 2.047985501 1.024589581 1.434054649 0.899364556 0.041108306 0.070834441 0.441382521 0.004101676 0.045324198 3.31E-05 4.479524892 0.409465068 SQS(ph)MDIDGVSCEK ddPTM_HeLa_CUDC101_4h_R1 3 SQSMDIDGVSCEK 13 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 S(0.004)QS(0.945)MDIDGVS(0.051)CEK;SQS(0.915)MDIDGVS(0.085)CEK;SQS(0.999)MDIDGVSCEK ;; 242.93 1.27E-44 51311100 15747.9 9738.1 8987.9 9270.4 10990.1 12807.3 13366.7 14941.3 10352.8 10616.5 TRUE FALSE FALSE 13901.95503 10038.11932 9473.813061 9648.486982 10179.38222 12563.02209 13882.2581 16642.1572 9926.053202 10553.35259 1.317302243 0.951178238 0.897706486 0.914257996 0.964563833 1.190429486 1.315435828 1.576954533 0.940559232 1 13.36541377 -4.47781793 1.8225631 1.090302422 1.623416968 0.604051823 0.137883927 0.406142709 1.86768765 0.024963241 0.318145202 3.33E-05 4.47781793 0.533114546 GSESPNSFLDQES(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 GSESPNSFLDQESR 14 0 G9CGD6;Q5T4Y8;A0A5H1ZRR2;G9CGD6-3;G9CGD6-2;Q6P9H4 G9CGD6 CNKSR3 Connector enhancer of kinase suppressor of ras 3 1 0 GS(0.001)ES(0.077)PNS(0.052)FLDQES(0.87)R 135.86 0.00065403 11627000 2857.7 2305.9 2284.3 2047.5 2311 2569.4 2007.4 1589 1910.1 2278.4 TRUE FALSE FALSE 2522.724738 2376.942046 2407.796168 2131.0059 2140.522134 2520.392976 2084.82609 1769.885337 1831.36487 2264.847975 1.113860517 1.049492978 1.063116021 0.94090461 0.945106319 1.112830973 0.920514804 0.781458781 0.808603884 1 11.1451985 -4.477778553 3.299888899 1.042484716 0.788043818 0.281413324 0.093772447 0.131555924 2.646597755 0.009268279 0.063303083 3.33E-05 4.477778553 -0.254440898 SADGVIVSGVKDVDDFFEHER ddPTM_HeLa_CUDC101_4h_R1 1 SADGVIVSGVKDVDDFFEHER 21 1 G3V5X9;Q9UNH7;A0A0A0MRI2;Q9UNH7-2 G3V5X9 SNX6 "Sorting nexin-6;Sorting nexin-6, N-terminally processed" 0 0 48.053 0.036503 2575600 750.75 848.32 1039.6 772.94 1251.9 890.54 845.81 1322.6 968.69 777.16 FALSE FALSE TRUE 662.7482231 874.4557337 1095.803921 804.4638341 1159.549831 873.5544332 878.433175 1473.159438 928.7601882 772.5374178 0.857884949 1.131926705 1.418447696 1.041326693 1.500962678 1.130760029 1.137075247 1.906910143 1.202220329 1 9.593461001 -1 0.274147408 0.925692153 6.289843424 0.368924427 0.227885009 28.6004153 0.3635262 0.097240847 73.93156777 0.1 1 5.364151272 GSQPPPAAESQS(ph)SLRR ddPTM_HeLa_CUDC101_4h_R1 1 GSQPPPAAESQSSLRR 16 1 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;E9PII3;A0A2R8Y5B3;E9PJP4;E9PQD2;E9PIG0;E9PRG1;E9PQN0 O43491 EPB41L2 Band 4.1-like protein 2 1 0 GSQPPPAAES(0.045)QS(0.608)S(0.348)LRR 126.25 0.00027202 13520000 4390.7 3735.1 3368.8 4069.7 3527.4 3707.3 3680.6 3545.4 3317.7 3619.3 TRUE FALSE FALSE 3876.028802 3850.174004 3550.927518 4235.679957 3267.19073 3636.589429 3822.561975 3948.994005 3180.943002 3597.772243 1.077341349 1.070155014 0.986979519 1.177306308 0.908114941 1.010789228 1.062480256 1.097622011 0.884142405 1 11.81288814 -4.477590886 4.155696156 1.035592439 1.093364435 0.054765818 0.081556179 0.44940306 15.88104493 0.008825172 0.052422072 3.33E-05 4.477590886 0.057771995 SADSSNLK(ac)THVK(ac)TK ddPTM_HeLa_CUDC101_4h_R1 1 SADSSNLKTHVKTK 14 2 E9PEP7;P17010-2;P17010;P17010-3 E9PEP7 ZFX Zinc finger X-chromosomal protein 0 2 SADSSNLK(1)THVK(1)TK 99.752 0.027483 6461000 752.14 1491.1 2177.3 2379.6 2177.6 2013.9 1997.5 2270.4 20.626 0 FALSE TRUE FALSE 663.9752894 1537.039024 2295.011424 2476.650374 2016.962786 1975.488213 2074.544244 2528.853159 19.77578755 0 0 SAEEEAADLPTK(ac)PTK ddPTM_HeLa_CUDC101_4h_R1 1 SAEEEAADLPTKPTK 15 1 Q8WW12;Q8WW12-2 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 0 1 SAEEEAADLPTK(1)PTK 242.4 6.11E-36 701690 549.68 691.51 462.13 418.62 501.22 586.18 616.79 488.3 540.25 435.06 FALSE TRUE FALSE 485.2473437 712.8146035 487.1141457 435.693133 464.2459992 574.9995931 640.5797969 543.8860982 517.9806663 432.4722438 1.122031184 1.648232028 1.126347766 1.007447621 1.073470045 1.329564155 1.481204415 1.257620821 1.197720024 1 8.756463733 -12.74855955 0.059774853 1.36E-07 1.723216696 0.024798987 0.197196726 283.7208218 1.542747208 45.15601096 10.54471945 1.78E-13 12.74855955 1.72321656 TSLS(ph)PTSK ddPTM_HeLa_CUDC101_4h_R1 1 TSLSPTSK 8 0 Q8NDI1-3;Q8NDI1-2;Q8NDI1;H7C0Q4 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 0 T(0.025)SLS(0.88)PT(0.095)S(0.001)K 95.483 0.022979 40215000 4896.4 4004.8 4484.9 4502.4 4287.8 4055.3 3916.3 3153 4435 4459.7 TRUE FALSE FALSE 4322.451414 4128.183141 4727.36726 4686.027333 3971.497537 3977.951909 4067.353003 3511.924775 4252.187423 4433.173506 0.975024192 0.931202701 1.066361886 1.057036754 0.895858809 0.897314735 0.917481122 0.792192043 0.9591746 1 12.11412411 -4.475239513 0.803649106 0.991848455 0.742009159 0.586942585 0.049874794 1.013354912 0.570842046 0.008100391 0.210081934 3.35E-05 4.475239513 -0.249839296 SAEIDSDDTGGSAAQK ddPTM_HeLa_CUDC101_4h_R1 2 SAEIDSDDTGGSAAQK 16 0 P33176 P33176 KIF5B Kinesin-1 heavy chain 0 0 ; ; 272.5 5.05E-85 15431900 2688.6 2765.3 2997.5 2287.9 2606.3 2643.8 2002.51 2603.26 2418.7 2482.38 FALSE FALSE TRUE 2373.446384 2850.495615 3159.553917 2381.210451 2414.038441 2593.37392 2079.747481 2899.604596 2319.000162 2467.614693 0.961838325 1.155162361 1.280408131 0.964984711 0.978288242 1.050963883 0.842816947 1.175063758 0.939774013 1 11.26890143 SAEKEISLWFKPEELVDYK ddPTM_HeLa_CUDC101_4h_R1 1 SAEKEISLWFKPEELVDYK 19 2 Q32Q12;P22392-2;P22392 Q32Q12 NME1-NME2;NME2 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B 0 0 65.949 0.0096582 11222000 1196.3 1614.4 1374 1488.2 2505.9 2137.6 2030.9 2245.5 1690.4 1673.3 FALSE FALSE TRUE 1056.071527 1664.13775 1448.282596 1548.895229 2321.044749 2096.828841 2109.232493 2501.118643 1620.720997 1663.347137 0.634907473 1.000475315 0.870703754 0.931191808 1.395406105 1.26060808 1.268065124 1.503666064 0.974373274 1 10.69987357 -5.834704295 4.422380855 0.844258209 1.344710613 0.758375774 0.123842436 0.088721411 3.310398855 0.023062064 0.043414935 1.46E-06 5.834704295 0.500452404 SAEPAEALVLACK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 SAEPAEALVLACKR 14 1 Q96CW6 Q96CW6 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS 0 1 ; SAEPAEALVLACK(1)R;SAEPAEALVLACK(1)R 166.11 3.97E-05 1534900 336.301 352.86 198.12 304.82 467.97 274.54 237.28 366.05 256.42 291.34 FALSE TRUE FALSE 296.8803066 363.7311984 208.8309665 317.2518771 433.4487854 269.3036069 246.4319691 407.7196524 245.8502591 289.6070967 1.025114059 1.255947118 0.721083733 1.095456157 1.496678743 0.929892982 0.850918268 1.407837228 0.84890965 1 8.177953145 -6.007261669 24.96941339 1.009905057 1.151807962 0.141712369 0.222367062 648.0496812 2228346.094 0.030517202 0.053731593 9.83E-07 6.007261669 0.141902905 SESGGLGVSMVEYVLSS(ph)SPGDSCLRK ddPTM_HeLa_CUDC101_4h_R1 3 SESGGLGVSMVEYVLSSSPGDSCLRK 26 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 SESGGLGVSMVEY(0.001)VLS(0.012)S(0.49)S(0.49)PGDS(0.006)CLRK;S(0.002)ES(0.001)GGLGVS(0.042)MVEY(0.065)VLS(0.061)S(0.448)S(0.366)PGDS(0.016)CLRK;SESGGLGVSMVEYVLS(0.03)S(0.567)S(0.383)PGDS(0.021)CLRK ;; 115.34 2.60E-08 64010000 4514 4382.2 4099.2 3775.95 5243.5 4786.2 5337.9 4954.9 4939.8 3992.9 TRUE FALSE FALSE 3984.875763 4517.210388 4320.815151 3929.949562 4856.697452 4694.911209 5543.784591 5518.945788 4736.179353 3969.150053 1.003961984 1.138080024 1.088599598 0.990123706 1.22361145 1.182850521 1.396718319 1.390460354 1.193247746 1 11.95461439 -4.475055798 0.486046462 1.001428117 1.676046508 0.629758374 0.085879056 0.917276136 0.165731823 0.012750621 0.338901712 3.35E-05 4.475055798 0.674618392 SQPLTS(ph)PESR ddPTM_HeLa_CUDC101_4h_R1 1 SQPLTSPESR 10 0 P46939;P46939-2 P46939 UTRN Utrophin 1 0 SQPLT(0.063)S(0.937)PESR 146.5 5.01E-05 0 4602.5 3935 3851.7 3774.4 4347.8 4457.1 3374.8 2490.2 4420.9 4380 TRUE FALSE FALSE 4063.001927 4056.232686 4059.934553 3928.336346 4027.071456 4372.088244 3504.967166 2773.674302 4238.668631 4353.947565 0.933176587 0.93162185 0.932472082 0.90224705 0.924924197 1.00416649 0.805009044 0.637048164 0.973523123 1 12.08810832 -4.473515455 2.792018435 0.956646635 0.634031367 0.89238677 0.034092861 0.078825588 1.05598792 0.005711838 0.045655006 3.36E-05 4.473515455 -0.322615268 ELHT(ph)MTK ddPTM_HeLa_CUDC101_4h_R1 1 ELHTMTK 7 0 Q17RQ9 Q17RQ9 NKPD1 NTPase KAP family P-loop domain-containing protein 1 1 0 ELHT(0.5)MT(0.5)K 71.715 0.0032153 0 2667.7 2397.3 1781.8 1775.1 2560.6 2216.7 2294.4 2278.3 2260.8 2053.5 TRUE FALSE FALSE 2354.99625 2471.157971 1878.129498 1847.496251 2371.709639 2174.420141 2382.895777 2537.652463 2167.608867 2041.285691 1.153682829 1.210588985 0.920071848 0.905065008 1.161870507 1.065220881 1.167350453 1.243163793 1.061884124 1 10.9952624 -4.473046398 1.570209967 1.065382538 1.274523556 0.288269652 0.094613337 0.828450719 2.564675023 0.015230916 0.233501428 3.36E-05 4.473046398 0.209141019 RSS(ph)FSMEEGDVL ddPTM_HeLa_CUDC101_4h_R1 1 RSSFSMEEGDVL 12 1 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 RS(0.078)S(0.713)FS(0.209)MEEGDVL 146.67 0.0018154 17900000 4970.6 5651.5 4985.5 4671.4 5173.8 4767.1 4112.4 3390.2 6037.2 5050.2 TRUE FALSE FALSE 4387.953803 5825.616016 5255.03121 4861.919884 4792.139082 4676.17551 4271.016646 3776.126664 5788.344061 5020.161186 0.874066318 1.160444018 1.046785355 0.96847884 0.954578729 0.931479157 0.850772811 0.752192315 1.153019564 1 12.29351797 -4.472880788 1.430398685 0.96761785 0.710741789 0.41165623 0.093671657 0.657010037 1.593124917 0.012641971 0.214154573 3.37E-05 4.472880788 -0.256876062 SAEQEK(ac)DPISLK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 SAEQEKDPISLKR 13 2 Q9Y3Y4-2 Q9Y3Y4-2 PYGO1 Pygopus homolog 1 0 2 ; SAEQEK(1)DPISLK(1)R;SAEQEK(1)DPISLK(1)R 168.3 1.63E-06 9916900 6298.6 6214.8 6489.7 6356.1 6119.9 6028 5835.2 8071.8 3690.5 4953.3 FALSE TRUE FALSE 5560.287656 6406.270622 6840.552812 6615.329231 5668.44717 5913.025943 6060.265619 8990.661085 3538.376028 4923.837551 1.129258957 1.301072701 1.389272644 1.343531171 1.151225464 1.200897853 1.230801292 1.825945919 0.718621602 1 12.26556745 -1 0.131052234 0.905611156 2.911804256 0.533614009 0.184523748 52.59308943 0.463877338 0.542624874 19.60129654 0.1 1 2.0061931 SAEQQPSEK(ac)STEPK ddPTM_HeLa_CUDC101_4h_R1 2 SAEQQPSEKSTEPK 14 1 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;F8W7E0;P20810-2;E9PCH5;H0YA91;E9PSG1;H0Y944;D6RBR1;D6RGF7;E7EQK6;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 0 1 ; SAEQQPSEK(1)STEPK;SAEQQPSEK(1)STEPK 249.75 6.59E-45 1054630 282.17 391.27 409.04 378.3 293.15 289.87 131.133 483.01 215.196 316.75 FALSE TRUE FALSE 249.0944603 403.3245649 431.1539397 393.7287092 271.5249085 284.3412127 136.1908437 537.993906 206.3255298 314.8659569 0.79111271 1.280940527 1.36932536 1.250464525 0.862350796 0.903054797 0.432535943 1.708644247 0.655280526 1 8.298593973 -7.27911935 24.27885052 0.901358787 1.086141559 0.124926652 0.335543375 1257.47473 1726810.837 0.055127074 0.063118988 5.26E-08 7.27911935 0.184782772 SVS(ph)VDIR ddPTM_HeLa_CUDC101_4h_R1 2 SVSVDIR 7 0 Q6UB99 Q6UB99 ANKRD11 Ankyrin repeat domain-containing protein 11 1 0 S(0.003)VS(0.997)VDIR;S(0.002)VS(0.998)VDIR ; 120.87 0.011835 37651000 24249 17136.6 18167.5 19460.8 23205 29970 41126 53521 16876.3 19718.6 TRUE FALSE FALSE 21406.56898 17664.55833 19149.69 20254.49554 21493.21338 29398.37218 42712.2436 59613.6143 16180.65177 19601.31289 1.092098733 0.901192611 0.976959559 1.033323413 1.09651907 1.499816484 2.17905014 3.041307214 0.825488163 1 14.25866267 -4.472519966 1.220545568 1.022598863 3.546181912 0.985375772 0.081459305 0.065776342 0.105532065 0.009572004 0.188932803 3.37E-05 4.472519966 2.523583048 up S(ph)SPLPAK ddPTM_HeLa_CUDC101_4h_R1 1 SSPLPAK 7 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 S(0.873)S(0.127)PLPAK 112.41 0.013571 127380000 9587.8 5436.1 8350 8511.9 5693 6268.2 7067.9 4245 8883.1 9948.5 TRUE FALSE FALSE 8463.932618 5603.579798 8801.426257 8859.052074 5273.038732 6148.644529 7340.511271 4728.233641 8516.934858 9889.32588 0.855865478 0.566629097 0.88999254 0.895819612 0.533205073 0.621745567 0.742266092 0.478114858 0.861225018 1 13.27165647 -4.471318967 0.10885629 1.219767627 2.86E-15 0.432111946 0.130021267 22.04694306 0.425711884 1.129987113 4.460248857 3.38E-05 4.471318967 -1.219767627 SQS(ph)SDT(ph)EQQSPTSGGGK ddPTM_HeLa_CUDC101_4h_R1 1 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 S(0.108)QS(0.616)S(0.277)DT(0.985)EQQS(0.012)PT(0.001)SGGGK 108.25 0.0045823 13316000 1823.5 1482.2 1257.7 1388.8 1481.2 1448.9 1859.5 2080.8 1598.7 1836.2 TRUE FALSE FALSE 1609.752094 1527.864825 1325.695066 1445.441267 1371.934827 1421.264647 1931.221538 2317.669861 1532.800909 1825.278201 0.881921503 0.837058605 0.72629754 0.791901895 0.751630533 0.778656451 1.058042296 1.269762527 0.839762897 1 10.83390065 -4.470537666 3.491784586 0.886584942 1.256417856 0.67300832 0.091812783 0.154538169 3.504917693 0.016524444 0.110395183 3.38E-05 4.470537666 0.369832914 GPHHLDNSS(ph)PGPGSEAR ddPTM_HeLa_CUDC101_4h_R1 3 GPHHLDNSSPGPGSEAR 17 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 1 0 GPHHLDNS(0.195)S(0.805)PGPGSEAR;GPHHLDNS(0.035)S(0.964)PGPGSEAR;GPHHLDNS(0.111)S(0.889)PGPGSEAR ;; 194.27 1.60E-16 66184000 10680.7 7994.5 8310.7 8058.2 10591.8 8588.6 7346.6 3895.1 9323.6 9651 TRUE FALSE FALSE 9428.724537 8240.801069 8760.00158 8386.848227 9810.464016 8424.786765 7629.960823 4338.502439 8939.277262 9593.595423 0.982814484 0.858989847 0.91310934 0.874213249 1.02260556 0.878167819 0.795318177 0.452229039 0.931796357 1 13.22785588 -4.039631336 1.192336706 0.969177665 5.65E-12 0.864894004 0.056812678 0.5955902 0.495156894 0.009060852 0.807346339 9.13E-05 4.039631336 -0.969177665 down LFPGS(ph)PAIYK ddPTM_HeLa_CUDC101_4h_R1 1 LFPGSPAIYK 10 0 P49792;A6NKT7;J3KNE0;J3KQ37;O14715;Q99666;Q7Z3J3;P0DJD1;P0DJD0;A0A1W2PNU4;F8VYC4;A0A286YES2;Q99666-2;F8W705;H0YBN8;C9J6W1;C9JF75;Q7Z3J3-2;C9J1W9 P49792 RANBP2;RGPD3;RGPD8;RGPD5;RGPD4;RGPD2;RGPD1;RGPD6 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 1 1 0 LFPGS(0.975)PAIY(0.025)K 83.081 0.038921 32213000 4901.5 3850 4489.4 4531.4 4712.7 4221.9 3920.8 1861.2 4852.6 5026.7 TRUE FALSE FALSE 4326.9536 3968.613937 4732.110544 4716.210078 4365.05351 4141.374292 4072.026569 2073.071485 4652.573774 4996.800965 0.865944758 0.794230942 0.947028024 0.943845895 0.873569618 0.828805134 0.81492671 0.41487974 0.931110486 1 12.28678904 -4.037728721 1.355075693 0.920316934 1.44E-21 0.857446171 0.058673779 0.678411541 0.734967502 0.010521202 0.984399764 9.17E-05 4.037728721 -0.920316934 down HVLEDS(ph)PAGK ddPTM_HeLa_CUDC101_4h_R1 1 HVLEDSPAGK 10 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970;B7ZB24;H0YGQ3;F5H8D6;F8WDQ8 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 HVLEDS(1)PAGK 71.085 0.040341 6089700 2948.9 2791.8 2385.3 2972.9 2799.8 2923.1 2083.6 1271.5 3050.3 3306.1 TRUE FALSE FALSE 2603.234412 2877.812049 2514.256533 3094.147712 2593.264332 2867.346738 2163.96515 1416.24242 2924.565343 3286.43517 0.792114944 0.875663721 0.76504066 0.941490567 0.789081238 0.872479325 0.658453625 0.430935755 0.889889863 1 11.68230781 -4.036878765 1.026451604 0.887821901 5.46E-09 0.787429072 0.070933808 1.088541466 0.660042988 0.013788783 1.177066245 9.19E-05 4.036878765 -0.887821896 down S(ph)NSAPLIHGLSDTSPVFQAEAPSAR ddPTM_HeLa_CUDC101_4h_R1 2 SNSAPLIHGLSDTSPVFQAEAPSAR 25 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 0 S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR;S(0.5)NS(0.5)APLIHGLSDTSPVFQAEAPSAR ; 124.9 3.11E-10 142988000 3794 2562.1 2243.7 1983.1 3921 3001.7 3382.8 3519 3688.3 3476.5 TRUE FALSE FALSE 3349.273071 2641.035264 2365.001209 2063.97939 3631.755642 2944.447574 3513.275729 3919.588736 3536.266713 3455.821623 0.969168388 0.764227889 0.684352801 0.597247085 1.050909462 0.852025334 1.01662531 1.134198799 1.023278137 1 11.75481304 -4.46967228 3.353457948 0.917647062 1.128808172 0.197635648 0.149688467 0.395678444 8.145814512 0.023159285 0.159629544 3.39E-05 4.46967228 0.211161111 PTEATVSLS(ph)SLVDYPHQAR ddPTM_HeLa_CUDC101_4h_R1 2 PTEATVSLSSLVDYPHQAR 19 0 Q92619;F5H1R4;K7ES98;K7EM85;Q92619-2;K7ES92 Q92619 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 0 PTEATVSLS(0.988)S(0.012)LVDYPHQAR;PTEATVSLS(0.829)S(0.171)LVDYPHQAR ; 148.44 2.84E-05 7638300 4054.9 2662.7 2607.9 2890.9 3037.2 3130.9 3662.9 4059.3 2237.6 3161.3 TRUE FALSE FALSE 3579.590769 2744.734631 2748.890962 3008.803398 2813.151807 3071.183299 3804.17928 4521.394304 2145.365181 3142.496447 1.139091429 0.873424896 0.874747516 0.95745642 0.895196496 0.977306848 1.210559612 1.438790586 0.682694545 1 11.6176954 -4.469599145 2.742553352 1.01520545 1.443841529 0.534125983 0.136795809 0.168733212 2.154798587 0.015736306 0.129448583 3.39E-05 4.469599145 0.428636079 EES(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 2 EESPLR 6 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 EES(1)PLR;EES(1)PLR ; 93.195 0.040447 848840000 18890.5 6826.2 15529.5 17014.9 9070 9462.2 10512.1 3351.3 18581.9 15169.4 TRUE FALSE FALSE 16676.18423 7036.507131 16369.07174 17708.84117 8400.92417 9281.7243 10917.55522 3732.798446 17815.94622 15079.17173 1.105908502 0.466637509 1.085541834 1.17439084 0.557121062 0.615532767 0.724015577 0.24754665 1.181493688 1 13.88026957 -4.469540206 0.474076554 1.035816316 1.84E-15 0.490052663 0.227333138 2.387751761 0.408286932 0.050090154 1.327252568 3.39E-05 4.469540206 -1.035816316 SAGEEEDGPVLTDEQK ddPTM_HeLa_CUDC101_4h_R1 2 SAGEEEDGPVLTDEQK 16 0 A0A0C4DG62;F5GYV5;H7BZV4;F8WCT1;Q66PJ3-7;Q66PJ3-4;Q66PJ3-3;F5H7X4;Q66PJ3-2;Q66PJ3 A0A0C4DG62;Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 0 0 ; ; 259.85 3.97E-69 10800600 3752.97 3439.8 3543.8 3574.7 4002.4 3699.2 3572.5 3730.7 4329.4 3529.8 FALSE FALSE TRUE 3313.052546 3545.776161 3735.388547 3720.491717 3707.150926 3628.643923 3710.292522 4155.387808 4150.9403 3508.804593 0.944211186 1.010536799 1.064575826 1.060330269 1.056528179 1.034153891 1.057423525 1.184274501 1.183006973 1 11.77676389 -6.872926715 2.963103529 0.97366922 1.072689133 0 0.077515851 0.147190967 2.611684663 0.00700008 0.009459409 1.34E-07 6.872926715 0.099019913 KADTTTPTPTAILAPGS(ph)PAS(ph)PPGSLEPK ddPTM_HeLa_CUDC101_4h_R1 2 KADTTTPTPTAILAPGSPASPPGSLEPK 28 1 P25440-2;P25440;A0A0G2JK44;A0A140T9E9;H0Y6K2;P25440-3;P25440-4;A0A0G2JHL0;A0A140T9V2;A0A140T9F7;U3KQA6;E9PIQ3;H0YDJ7;U3KPW0 P25440-2 BRD2 Bromodomain-containing protein 2 2 0 KADTTTPTPTAILAPGS(0.989)PAS(0.978)PPGS(0.032)LEPK;KADTTTPTPTAILAPGS(1)PAS(1)PPGSLEPK ; 157.56 1.36E-16 104283000 4944.7 4841.1 3731.3 3758.1 3645.9 3640 3476.9 2276.8 4424.1 4586.1 TRUE FALSE FALSE 4365.089762 4990.248553 3933.025365 3911.371562 3376.949221 3570.573065 3611.005198 2535.981709 4241.736725 4558.821673 0.95750395 1.094635612 0.862728496 0.857978627 0.740750453 0.783222798 0.792091785 0.556280085 0.930445854 1 12.15444526 -4.469461905 0.389744307 0.999191107 0.382696591 0.745587318 0.072402537 1.671356139 0.193893474 0.020194717 0.466782155 3.39E-05 4.469461905 -0.616494516 LVHT(ph)SPNYR ddPTM_HeLa_CUDC101_4h_R1 2 LVHTSPNYR 9 0 Q15751;H0YNB1 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 LVHT(0.885)S(0.115)PNYR;LVHT(0.907)S(0.093)PNYR ; 98.04 0.027604 19416900 1653.88 1140 1240.59 1341.15 1485.45 1225.4 1060.4 804.77 1026.66 1084.9 TRUE FALSE FALSE 1460.014694 1175.122049 1307.660048 1395.847894 1375.871313 1202.027537 1101.299983 896.3817638 984.3406403 1078.446967 1.353812231 1.089642871 1.212539966 1.294312968 1.275789497 1.114591235 1.021190673 0.831178344 0.912739032 1 10.07473952 -4.469370223 1.812946619 1.183893388 0.794330206 0.371334587 0.129919087 0.458919432 2.05950071 0.019999101 0.263333728 3.39E-05 4.469370223 -0.389563181 DGLAPEKTS(ph)PDRDK ddPTM_HeLa_CUDC101_4h_R1 1 DGLAPEKTSPDRDK 14 2 Q7L4I2;E9PI52 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 DGLAPEKT(0.449)S(0.551)PDRDK 71.263 0.036542 419350000 1935.9 1608 2023 1841.1 2083.3 1905.4 2053.2 2094.1 2279.6 2295.6 TRUE FALSE FALSE 1708.976737 1657.540574 2132.369499 1916.188016 1929.61911 1869.05767 2132.392612 2332.483879 2185.633923 2281.945669 0.748912106 0.726371621 0.934452353 0.839716757 0.845602564 0.819063177 0.934462481 1.022146982 0.957794023 1 11.15604873 -4.468754446 3.405338517 0.862965697 1.017521534 0.278239787 0.082286156 0.338381964 7.20790189 0.014699462 0.10041592 3.40E-05 4.468754446 0.154555837 APGASPGNPLS(ph)PSLSDKDR ddPTM_HeLa_CUDC101_4h_R1 2 APGASPGNPLSPSLSDKDR 19 1 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 1 0 APGASPGNPLS(0.974)PS(0.016)LS(0.009)DKDR;APGASPGNPLS(0.988)PS(0.008)LS(0.004)DKDR ; 92.565 0.0016155 31004000 4135.5 3046.3 3173 3087.5 3168.3 3046.8 2903.1 2155.5 3498.1 3558.6 TRUE FALSE FALSE 3650.742959 3140.152892 3344.541978 3213.421595 2934.580821 2988.687366 3015.073539 2400.873407 3353.906837 3537.433289 1.032031606 0.88769247 0.945471393 0.908404861 0.829579127 0.844874552 0.852333682 0.678704928 0.948118753 1 11.78848723 -4.467830608 0.334938786 1.024681409 0.534138227 0.73633359 0.048915762 1.786014758 0.156943393 0.017574036 0.347767006 3.41E-05 4.467830608 -0.490543182 GDSET(ph)DLEALFNAVMNPK ddPTM_HeLa_CUDC101_4h_R1 2 GDSETDLEALFNAVMNPK 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 GDS(0.268)ET(0.732)DLEALFNAVMNPK;GDS(0.151)ET(0.849)DLEALFNAVMNPK ; 234.82 4.58E-43 657000000 1929.26 1746.21 1455.39 1428.38 1849.76 1578.02 2326.6 2847.9 1498.2 1993.65 TRUE FALSE FALSE 1703.115067 1800.00866 1534.072786 1486.63551 1713.30689 1547.921898 2416.337741 3172.093424 1436.443562 1981.791681 0.85938148 0.908273396 0.774083775 0.750147215 0.864524211 0.781071952 1.219269293 1.600619003 0.724820664 1 10.9525896 -4.467657504 2.903449229 0.89321481 1.60255067 0.855626135 0.098033214 0.086341696 1.261163735 0.014315593 0.112032238 3.41E-05 4.467657504 0.70933586 VHGLPTTSPS(ph)GMNMAELAQQVVK ddPTM_HeLa_CUDC101_4h_R1 1 VHGLPTTSPSGMNMAELAQQVVK 23 0 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 VHGLPT(0.034)T(0.099)S(0.397)PS(0.471)GMNMAELAQQVVK 66.636 0.020762 20042000 2143.6 1731.8 1677.8 1686.2 2207.3 2243.7 1398.2 821.9 2004.8 1852.7 TRUE FALSE FALSE 1892.330457 1785.154705 1768.506943 1754.970524 2044.471877 2200.905161 1452.129042 915.4617738 1922.161295 1841.680058 1.027502279 0.969307724 0.960268281 0.952918243 1.110112404 1.195052936 0.788480625 0.497079702 1.043699902 1 10.84680674 -4.467571189 3.641701802 1.018741961 0.518408126 0.835350075 0.074211461 0.069452364 1.725029084 0.010384059 0.067968592 3.41E-05 4.467571189 -0.500333836 SAGQGEVLVYVEDPAGHQEEAK ddPTM_HeLa_CUDC101_4h_R1 2 SAGQGEVLVYVEDPAGHQEEAK 22 0 P21333-2;P21333;Q60FE5;A0A087WWY3;F8WE98 P21333-2 FLNA Filamin-A 0 0 ; ; 213.64 1.52E-26 30704000 7660.8 5933 5866.3 5905.7 5896.8 6239.2 5983 5302.1 6720.5 7109.7 FALSE FALSE TRUE 6762.812637 6115.788698 6183.449923 6146.559973 5461.804812 6120.197655 6213.766314 5905.669632 6443.478145 7067.411188 0.956900972 0.865350626 0.874924319 0.869704593 0.772815486 0.86597447 0.879213923 0.835619929 0.91171689 1 12.78696613 -7.300658303 1.110715101 0.98782648 0.844445463 0.584441032 0.038255762 0.133136854 0.320987308 0.006420662 0.0074896 5.00E-08 7.300658303 -0.143381017 SAGSMCITQFMK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 SAGSMCITQFMKK 13 1 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 0 1 SAGSMCITQFMK(1)K 84.289 0.025604 5432300 7373.6 4942.9 4410 3983.7 6333.2 5557.7 5458.6 5357.8 4836.6 4732.1 FALSE TRUE FALSE 6509.277786 5095.18489 4648.41794 4146.172505 5866.012454 5451.696132 5669.140031 5967.710295 4637.233301 4703.953259 1.383788789 1.083170816 0.988193905 0.881422981 1.247038848 1.158960524 1.205186302 1.268658502 0.985816195 1 12.19965801 -9.802912483 1.819292407 0.99950092 1.187039937 0.134671413 0.139426113 0.559315901 3.351264899 0.121962077 0.025409311 1.57E-10 9.802912483 0.187539017 DLS(ph)TPGLEK ddPTM_HeLa_CUDC101_4h_R1 2 DLSTPGLEK 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DLS(0.5)T(0.5)PGLEK;DLS(0.635)T(0.365)PGLEK ; 139.43 0.0019401 104608000 19650.9 16067.5 15633.4 15742.8 15554.9 13861.2 12028.6 6679.6 15935.3 16110.3 TRUE FALSE FALSE 17347.45129 16562.52063 16478.58889 16384.85943 14407.44602 13596.8207 12492.54713 7439.978664 15278.44019 16014.47522 1.083235701 1.034221878 1.028980886 1.023128089 0.89965146 0.849033173 0.780078458 0.464578362 0.954039391 1 13.9670889 -4.036616261 0.706509344 1.040136565 1.26E-16 0.931115888 0.045573361 0.580797749 0.163802279 0.00721694 0.517158439 9.19E-05 4.036616261 -1.040136565 down SALAPNLLTSGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 SALAPNLLTSGKK 13 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 0 1 ; SALAPNLLTSGK(1)K;SALAPNLLTSGK(1)K 193.62 7.84E-10 2614200 2361.06 2570.86 2935.17 2857.62 3746.38 3254.45 3625.1 3464.78 1985.61 2036.03 FALSE TRUE FALSE 2084.300126 2650.065149 3093.854169 2974.166095 3470.017011 3192.376789 3764.921321 3859.19655 1903.762315 2023.919603 1.029833459 1.309372737 1.528644796 1.469508023 1.714503385 1.577323913 1.860212884 1.906793404 0.940631393 1 10.98293627 -6.45764414 0.623934353 0.983495148 1.846287792 0.924110593 0.09241055 0.137248812 0.106707231 0.02272729 0.050919944 3.49E-07 6.45764414 0.862792644 SALEDKERDEDDEDGDGDGDGATGK ddPTM_HeLa_CUDC101_4h_R1 4 SALEDKERDEDDEDGDGDGDGATGK 25 2 G3V1U3;F8VQZ7;P50579-3;P50579 G3V1U3 METAP2 Methionine aminopeptidase 2 0 0 ;;; ;;; 84.948 1.71E-05 178175000 16293.3 16174.1 16510.7 15618.4 16078.5 15786.8 15934.1 15985.8 16382.7 16872.3 FALSE FALSE TRUE 14383.42407 16672.40485 17403.31838 16255.38586 14892.42109 15485.69309 16548.68357 17805.55886 15707.39817 16771.94281 0.857588428 0.99406521 1.037644749 0.969201126 0.887936553 0.923309438 0.986688529 1.061627687 0.936528245 1 14.0337622 SALEDKERDEDDEDGDGDGDGATGKK ddPTM_HeLa_CUDC101_4h_R1 2 SALEDKERDEDDEDGDGDGDGATGKK 26 3 G3V1U3;F8VQZ7;P50579-3;P50579 G3V1U3 METAP2 Methionine aminopeptidase 2 0 0 ; ; 49.326 0.014368 41497000 6525.4 5665.9 6181.4 5641.2 6166 6510.9 6524 6340 5765.9 6403.9 FALSE FALSE TRUE 5760.502504 5840.459663 6515.585182 5871.272519 5711.146464 6386.71543 6775.632865 7061.719973 5528.227162 6365.809318 0.904912827 0.917473234 1.023528173 0.922313602 0.897159525 1.003284125 1.06437886 1.10932006 0.868424875 1 12.63612823 -4.803186927 2.527561787 0.950627862 1.098847913 0.618788778 0.047050524 0.15321118 1.910404346 0.006674284 0.030080204 1.57E-05 4.803186927 0.148220051 LVEPHS(ph)PSPSSK ddPTM_HeLa_CUDC101_4h_R1 2 LVEPHSPSPSSK 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 LVEPHS(0.924)PS(0.043)PS(0.022)S(0.01)K;LVEPHS(0.99)PS(0.01)PSSK ; 103.88 0.0053909 239670000 19417.8 13989.2 13944 13104.2 18601.1 15554.9 17222.7 17721.2 16481.9 17182 TRUE FALSE FALSE 17141.67492 14420.19067 14697.85482 13638.64592 17228.93391 15258.2162 17886.98531 19738.50978 15802.50911 17079.8007 1.003622655 0.84428331 0.860540183 0.798524887 1.008731555 0.893348609 1.047259603 1.15566394 0.925216247 1 14.06000352 -4.467173153 3.59538552 0.960580113 1.14829585 0.417995473 0.078689274 0.225653778 5.43473918 0.012503106 0.082597559 3.41E-05 4.467173153 0.187715736 RSDLDLGYEPEGSASPT(ph)PPYLK ddPTM_HeLa_CUDC101_4h_R1 1 RSDLDLGYEPEGSASPTPPYLK 22 1 O15169-2;O15169 O15169-2 AXIN1 Axin-1 1 0 RSDLDLGYEPEGS(0.114)AS(0.33)PT(0.547)PPY(0.009)LK 99.881 0.0015598 21042000 2532.3 2314.2 2180.7 2578 2537.8 2517 2805.6 3053.3 2698.7 2616.6 TRUE FALSE FALSE 2235.467633 2385.497759 2298.595238 2683.141983 2350.59155 2468.992419 2913.812932 3400.87533 2587.458444 2601.036347 0.85945267 0.917133573 0.883722844 1.031566509 0.903713457 0.949234109 1.120250755 1.307507807 0.99477981 1 11.34487084 -4.467033951 1.936836674 0.931892585 1.346543352 0.829188533 0.052591896 0.169160572 0.898886743 0.008750175 0.107381304 3.41E-05 4.467033951 0.414650768 TYS(ph)LTTPAR ddPTM_HeLa_CUDC101_4h_R1 4 TYSLTTPAR 9 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 T(0.049)YS(0.94)LT(0.011)TPAR;T(0.009)YS(0.991)LTTPAR;T(0.003)YS(0.985)LT(0.011)T(0.001)PAR;T(0.078)YS(0.894)LT(0.028)TPAR ;;; 128.03 0.0037629 230874000 7320.9 6730.1 6686.1 6702.8 6660.9 6496.6 6633.3 6522.4 7067.8 6645.9 TRUE FALSE FALSE 6462.7552 6937.446404 7047.57079 6976.169156 6169.538677 6372.688179 6889.148603 7264.883652 6776.462292 6606.369891 0.978261179 1.05011474 1.066784165 1.055976167 0.93387727 0.964627819 1.042803948 1.099678609 1.025746727 1 12.68964203 -4.466399181 3.700317418 0.998754311 1.095248982 0.278795846 0.041504224 0.207966609 5.342220216 0.006066205 0.039423479 3.42E-05 4.466399181 0.096494671 GVEPSPS(ph)PIKPGDIKR ddPTM_HeLa_CUDC101_4h_R1 2 GVEPSPSPIKPGDIKR 16 2 Q92890;Q92890-1;Q92890-3 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 0 GVEPS(0.136)PS(0.864)PIKPGDIKR;GVEPS(0.013)PS(0.987)PIKPGDIKR ; 72.793 0.023236 296590000 7642.7 8099.6 8004.3 7459.9 7794.6 7050.4 6464 5365.8 7211.6 7413.5 TRUE FALSE FALSE 6746.834292 8349.139076 8437.03667 7764.146966 7219.607887 6915.925367 6713.318645 5976.620983 6914.334796 7369.404172 0.915519645 1.132946284 1.144873652 1.05356509 0.979673216 0.938464658 0.9109717 0.811004641 0.938248824 1 12.84733226 -4.465881308 1.353956081 0.99437296 0.778078758 0.425287805 0.07476949 0.90165346 1.878212099 0.013094901 0.239334346 3.42E-05 4.465881308 -0.216294201 AGSST(ph)PGDAPPAVAEVQGR ddPTM_HeLa_CUDC101_4h_R1 4 AGSSTPGDAPPAVAEVQGR 19 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 AGS(0.008)S(0.082)T(0.91)PGDAPPAVAEVQGR;AGS(0.001)S(0.004)T(0.995)PGDAPPAVAEVQGR;AGSS(0.006)T(0.993)PGDAPPAVAEVQGR;AGSS(0.029)T(0.971)PGDAPPAVAEVQGR ;;; 253.36 3.10E-56 143733000 12524.8 10081.6 9987.5 10583.2 12033.2 11217.4 11739.2 11933.6 11356 11916.8 TRUE FALSE FALSE 11056.66193 10392.20215 10527.45446 11014.82864 11145.53481 11003.44678 12191.98488 13292.07279 10887.90087 11845.91834 0.933373134 0.877281258 0.888698888 0.929841682 0.940875539 0.928880857 1.029213989 1.122080399 0.919126788 1 13.53210243 -4.465669494 2.708502102 0.948863414 1.1252783 0.7213251 0.036996612 0.177333835 2.186939882 0.006638799 0.055928739 3.42E-05 4.465669494 0.176414887 RAS(ph)SPFR ddPTM_HeLa_CUDC101_4h_R1 1 RASSPFR 7 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 RAS(0.891)S(0.109)PFR 70.816 0.032466 12128000 1900.5 540.36 1601.5 1875.1 1102.1 828.1 1017.7 412.48 1338.8 1574.4 TRUE FALSE FALSE 1677.726271 557.0078511 1688.081934 1951.574683 1020.800279 812.3053722 1056.95303 459.4350559 1283.614097 1565.035399 1.072005318 0.35590751 1.078622206 1.246984371 0.652253795 0.519033226 0.675354072 0.293562086 0.820182149 1 10.61197957 -4.465381582 0.516967646 1.012620056 1.90E-13 0.323229852 0.254046259 2.433949218 0.497651175 0.051623393 1.425358682 3.42E-05 4.465381582 -1.012620056 EGDPVSLSTPLETEFGSPS(ph)ELSPR ddPTM_HeLa_CUDC101_4h_R1 1 EGDPVSLSTPLETEFGSPSELSPR 24 0 E9PMR3;E9PMG4;Q9BUR4 E9PMR3 WRAP53 Telomerase Cajal body protein 1 1 0 EGDPVSLSTPLETEFGS(0.008)PS(0.838)ELS(0.154)PR 187.01 2.97E-15 6168200 4150.1 3722.6 3108 3405.6 3938.5 3561.5 4144.5 4546.8 3715.9 3730.4 TRUE FALSE FALSE 3663.631569 3837.288894 3276.027881 3544.495088 3647.964702 3493.570321 4304.354753 5064.389333 3562.729029 3708.211415 0.987978073 1.034808554 0.883452294 0.955850326 0.983753161 0.942117353 1.16076304 1.365722923 0.960767505 1 11.85650778 -4.462721813 2.625839902 0.982883472 1.376190313 0.898755191 0.041980096 0.074175584 0.845510428 0.005889851 0.051680069 3.45E-05 4.462721813 0.393306841 SVSS(ph)PTSSNTPT(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 1 SVSSPTSSNTPTPTK 15 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 2 0 S(0.004)VS(0.292)S(0.601)PT(0.019)S(0.027)S(0.056)NT(0.007)PT(0.497)PT(0.497)K 130.64 9.42E-05 0 1665.4 1731.9 1765.5 1491.7 1941.9 1350.4 1460.1 652.86 1875.9 1794.9 TRUE FALSE FALSE 1470.184337 1785.257786 1860.94827 1552.537974 1798.649906 1324.64337 1516.416546 727.1789434 1798.574608 1784.223855 0.823990965 1.000579485 1.043001563 0.870147526 1.008085337 0.742419941 0.84990263 0.407560375 1.008043135 1 10.80108092 -4.035018347 1.287242177 0.929158858 1.92E-16 0.757563538 0.090034337 0.921059894 0.891798922 0.013834431 1.2889236 9.23E-05 4.035018347 -0.929158858 down TPVAS(ph)THSISSAATPDR ddPTM_HeLa_CUDC101_4h_R1 1 TPVASTHSISSAATPDR 17 0 J3KNR0;P27448-8;P27448-6;P27448-3;P27448-4;P27448-2;P27448;P27448-7;H0YIY6;A2SY06 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 0 T(0.032)PVAS(0.484)T(0.484)HSISSAATPDR 139.49 2.75E-05 0 700.18 829.88 633.92 624.92 779.98 764.97 801.15 827.26 966.62 922.61 TRUE FALSE FALSE 618.1059618 855.4476191 668.1916327 650.4069387 722.4424293 750.3794718 832.0506239 921.4319345 926.7755145 917.1222747 0.673962435 0.932751982 0.728574206 0.70918236 0.787727492 0.818189125 0.907240667 1.004699111 1.010525576 1 9.840970283 -4.461533794 2.519830374 0.825342771 1.010852072 0.186545615 0.111286024 0.525577724 5.408253685 0.018478458 0.170076944 3.46E-05 4.461533794 0.185509301 GT(ph)PPPVFT(ph)PPLPK ddPTM_HeLa_CUDC101_4h_R1 3 GTPPPVFTPPLPK 13 0 Q6NZY4;Q6NZY4-2 Q6NZY4 ZCCHC8 Zinc finger CCHC domain-containing protein 8 2 0 GT(1)PPPVFT(1)PPLPK;GT(1)PPPVFT(1)PPLPK;GT(1)PPPVFT(1)PPLPK ;; 97.203 0.001381 0 5619.3 4700.5 4294.8 4539.2 4883.5 4613.5 4264.2 2005.49 5469 4871.2 TRUE FALSE FALSE 4960.614172 4845.316834 4526.989879 4724.328196 4523.253934 4525.505174 4428.671622 2233.786875 5243.565505 4842.225886 1.024449146 1.000638332 0.934898533 0.975652171 0.934126999 0.934591917 0.914594182 0.461314058 1.082883291 1 12.24145467 -4.034276923 1.660196663 0.995538263 7.03E-18 0.924196623 0.044743178 0.313528639 0.517116858 0.005811454 0.594815069 9.24E-05 4.034276923 -0.995538263 down EATAQKPTGSVGSTVT(ph)TPPPLVR ddPTM_HeLa_CUDC101_4h_R1 3 EATAQKPTGSVGSTVTTPPPLVR 23 1 Q86YP4-2;Q86YP4;Q86YP4-3 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 EATAQKPTGSVGS(0.001)T(0.024)VT(0.488)T(0.488)PPPLVR;EATAQKPTGSVGSTVT(0.5)T(0.5)PPPLVR;EATAQKPTGSVGS(0.006)T(0.025)VT(0.484)T(0.484)PPPLVR ;; 111.45 8.72E-06 92207000 7149.23 6671.8 5401.84 5930.65 6075.8 4964.75 4316.18 2664.69 6612.6 7267.5 TRUE FALSE FALSE 6311.208097 6877.35025 5693.87981 6172.527541 5627.600339 4870.055666 4482.656508 2968.027539 6340.025829 7224.272587 0.873611567 0.951978233 0.788159602 0.854415094 0.77898505 0.674124018 0.620499359 0.410841023 0.877600582 1 12.81863661 -4.033156675 0.380529848 0.959280328 8.86E-20 0.903709777 0.051431208 1.289037483 0.112776825 0.014426175 0.583845309 9.26E-05 4.033156675 -0.959280328 down KVSGTLDT(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 1 KVSGTLDTPEK 11 1 H7BZL0;Q9BYG3;C9J808 H7BZL0 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 KVSGTLDT(1)PEK 135.91 0.0076682 7621200 3777.3 3717.5 3882.6 3241.1 3278.5 3104 2357.5 1602.8 4194.4 4215.5 TRUE FALSE FALSE 3334.53062 3832.031769 4092.5051 3373.286067 3036.651587 3044.796372 2448.429565 1785.256273 4021.505057 4190.426019 0.795749789 0.914473075 0.976632228 0.804998359 0.724664169 0.726607834 0.584291324 0.426032166 0.959688833 1 12.03288121 -4.033003416 0.474997841 0.918648296 1.62E-19 0.875939206 0.061667755 1.784639738 0.231965326 0.01806838 0.959630179 9.27E-05 4.033003416 -0.918648296 down NMAPGAVCS(ph)PGESK ddPTM_HeLa_CUDC101_4h_R1 3 NMAPGAVCSPGESK 14 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 NMAPGAVCS(0.995)PGES(0.005)K;NMAPGAVCS(0.984)PGES(0.016)K;NMAPGAVCS(0.984)PGES(0.016)K ;; 149.97 0.00023778 25599500 8232.3 7663.3 7855.3 7429.2 8414 7667.7 5773.6 4003.92 7865.6 6787.4 TRUE FALSE FALSE 7267.322273 7899.39719 8279.981279 7732.194888 7793.315983 7521.451398 5996.289686 4459.710068 7541.376639 6747.028243 1.077114548 1.17079652 1.227204182 1.146014899 1.155073864 1.114779889 0.888730485 0.660988795 1.117733077 1 12.72003649 -4.461494641 2.630943765 1.080763985 0.65015722 0.802980449 0.070917407 0.147819518 1.690486366 0.012854556 0.112964279 3.46E-05 4.461494641 -0.430606765 RS(ph)STVAPAQPDGAESEWTDVETR ddPTM_HeLa_CUDC101_4h_R1 2 RSSTVAPAQPDGAESEWTDVETR 23 1 Q02241;A0A2U3TZL8;H7BYN4;Q02241-2;Q02241-3 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 0 RS(0.79)S(0.164)T(0.046)VAPAQPDGAESEWTDVETR;RS(0.682)S(0.122)T(0.196)VAPAQPDGAESEWTDVETR ; 156.57 6.35E-08 43443000 1671.87 1642.93 1582.14 1881.08 1616.03 1724.4 1804.74 1905.4 1441.85 1765.69 TRUE FALSE FALSE 1475.895933 1693.546726 1667.675274 1957.798573 1496.818686 1691.509943 1874.349426 2122.303034 1382.416333 1755.187597 0.84087646 0.96488075 0.950140758 1.11543551 0.852796982 0.963720314 1.067891221 1.209160227 0.787617423 1 10.77740952 -4.460378004 1.942371626 0.937707325 1.236963905 0.50326201 0.087089806 0.324278169 1.721444074 0.011966297 0.14948528 3.46E-05 4.460378004 0.29925658 VWS(ph)PLVTEEGK ddPTM_HeLa_CUDC101_4h_R1 2 VWSPLVTEEGK 11 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 VWS(1)PLVTEEGK;VWS(1)PLVTEEGK ; 153.75 0.0003622 41351000 13270.6 11296 10227.2 10501.2 10878.2 11551.9 9404.3 4834.4 12721.5 11362.9 TRUE FALSE FALSE 11715.04038 11644.01637 10780.11337 10929.48433 10075.73686 11331.56675 9767.027001 5384.728555 12197.11439 11295.31297 1.037159432 1.030871513 0.954388196 0.96761235 0.892028126 1.003209631 0.864697333 0.476722387 1.079838551 1 13.46343662 -4.031501704 1.464583452 1.00389958 4.34E-13 0.909744427 0.049139715 0.396511199 0.499685753 0.006840806 0.677371339 9.30E-05 4.031501704 -1.00389958 down WPT(ph)GDNIHAEHQVR ddPTM_HeLa_CUDC101_4h_R1 2 WPTGDNIHAEHQVR 14 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 WPT(1)GDNIHAEHQVR;WPT(1)GDNIHAEHQVR ; 156 3.12E-05 17058700 7852.7 6360.1 6957.8 7064.8 6683.7 5429.4 4601.5 2774.1 4227.8 5170.3 TRUE FALSE FALSE 6932.21841 6556.047142 7333.959714 7352.933081 6190.656767 5325.843241 4778.981396 3089.892331 4053.528295 5139.546826 1.348799543 1.275608019 1.426966222 1.430657863 1.204514129 1.036247635 0.929844898 0.601199373 0.788693718 1 12.32742544 -4.459962765 1.363098292 1.217872123 0.484316665 0.504202852 0.18741651 0.535814616 1.127569602 0.026295054 0.485999688 3.47E-05 4.459962765 -0.733555458 S(ph)PVSTRPLPSASQK ddPTM_HeLa_CUDC101_4h_R1 3 SPVSTRPLPSASQK 14 1 Q8ND56-3;Q8ND56-2;Q8ND56 Q8ND56-3 LSM14A Protein LSM14 homolog A 1 0 S(1)PVSTRPLPSASQK;S(0.998)PVS(0.001)TRPLPSASQK;S(1)PVSTRPLPSASQK ;; 128.71 0.0046801 2019610000 11334.6 10037.1 8818.7 9744.9 10452.5 9986.6 10274.3 10312.4 10670.4 10207 TRUE FALSE FALSE 10005.97537 10346.33115 9295.465597 10142.33914 9681.439899 9796.122244 10670.58319 11486.32193 10230.5616 10146.28831 0.986171008 1.019715864 0.916144438 0.999610777 0.954185373 0.96548826 1.051673564 1.132071313 1.008305824 1 13.30866444 -4.45968506 2.86856364 0.985922901 1.133270578 0.722489916 0.029317562 0.116708421 1.639134565 0.003897891 0.031545951 3.47E-05 4.45968506 0.147347677 ETPAAQSPTRGPSDT(ph)KR ddPTM_HeLa_CUDC101_4h_R1 1 ETPAAQSPTRGPSDTKR 17 2 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6 A0A087WVP4 SMTN Smoothelin 1 0 ETPAAQSPT(0.002)RGPS(0.071)DT(0.927)KR 68.978 0.023549 16328000 1847.3 1829.3 2087.9 1934.3 2143.1 1596.7 1629 1204.2 1611.3 1959.9 TRUE FALSE FALSE 1630.762294 1885.658565 2200.77819 2013.189115 1985.007783 1566.245608 1691.831076 1341.28126 1544.881532 1948.242428 0.837042799 0.967876758 1.12962235 1.03333604 1.018871037 0.803927471 0.868388375 0.688457063 0.792961651 1 10.92795749 -4.458384043 1.296801948 0.952139921 0.649720957 0.408998134 0.09954543 0.834216388 1.539458785 0.015492766 0.301619738 3.48E-05 4.458384043 -0.302418964 EPHS(ph)PADQPEQQAESTLTSAETR ddPTM_HeLa_CUDC101_4h_R1 1 EPHSPADQPEQQAESTLTSAETR 23 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 0 EPHS(1)PADQPEQQAESTLTSAETR 153.36 9.94E-08 4711900 759.7 690.95 454.81 717.16 663.85 621.22 493.12 508.41 711.14 676.48 TRUE FALSE FALSE 670.6491176 712.2373505 479.3984043 746.4088846 614.8791081 609.3712635 512.1398036 566.2853393 681.8265082 672.4562669 0.997312614 1.059157875 0.712906442 1.10997387 0.914377839 0.906187203 0.761595703 0.842114747 1.013934351 1 9.393296635 -4.457208243 0.444300137 1.000880277 0.665770352 0.284333458 0.103451543 3.550043669 0.528092595 0.023258872 0.604988046 3.49E-05 4.457208243 -0.335109924 SGT(ph)PPRQGS(ph)ITSPQANEQS(ph)VTPQRR ddPTM_HeLa_CUDC101_4h_R1 1 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.244)GT(0.708)PPRQGS(0.49)IT(0.201)S(0.383)PQANEQS(0.883)VT(0.092)PQRR 49.528 0.038035 104070000 1929.4 1640.1 1481.6 1418.8 1967.4 1741.6 1941.2 2084.4 1829.2 1892.5 TRUE FALSE FALSE 1703.238657 1690.629537 1561.699778 1476.664797 1822.268822 1708.381882 2016.072734 2321.679671 1753.799602 1881.243326 0.905379242 0.898676696 0.830142362 0.784940883 0.968651315 0.908113192 1.071670372 1.234119818 0.932255587 1 10.87747075 -4.453199632 2.31267507 0.927343807 1.253960849 0.730852575 0.06280736 0.202209094 1.66382597 0.010744613 0.111765379 3.52E-05 4.453199632 0.326617041 SAQDGPAPAEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 SAQDGPAPAEKR 12 1 E7ES68;G5E9D5;Q9BQ52;Q9BQ52-3;Q9BQ52-4;Q9BQ52-2;H7C2I4 E7ES68 ELAC2 Zinc phosphodiesterase ELAC protein 2 0 1 SAQDGPAPAEK(1)R 74.326 0.035871 0 190.44 0 0 68.446 70.709 0 0 0 0 184.26 FALSE TRUE FALSE 168.1169119 0 0 71.23752373 65.49293794 0 0 0 0 183.1640133 0.91784903 0 0 0.388927511 0.35756444 0 0 0 0 1 7.516992271 -7.268390623 23.63367369 0.96120654 0.114844906 0.201466572 0.33575045 60.3857577 205306.4055 0.026164444 0.030289473 5.39E-08 7.268390623 -0.846361634 TGVPSTAS(ph)VGK ddPTM_HeLa_CUDC101_4h_R1 1 TGVPSTASVGK 11 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7;H7BZ26 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 TGVPS(0.003)T(0.018)AS(0.978)VGK 128.21 0.0024659 38887000 2392.3 1669 1913.1 1769.1 2312.5 2301.9 2652 3001.8 1963.6 1978.8 TRUE FALSE FALSE 2111.87822 1720.419912 2016.527973 1841.251545 2141.911482 2257.995093 2754.288528 3343.512778 1882.659577 1967.03001 1.073638028 0.874628198 1.025163807 0.936056662 1.088906357 1.147921019 1.400227 1.699777208 0.957107704 1 10.94180325 -4.452163771 1.25950299 1.015807246 1.875333865 0.934790416 0.060566154 0.185076296 0.314344637 0.009178955 0.186874077 3.53E-05 4.452163771 0.859526618 KPPNLEGIVFPGES(ph)GLAPGSYKK ddPTM_HeLa_CUDC101_4h_R1 1 KPPNLEGIVFPGESGLAPGSYKK 23 2 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 0 KPPNLEGIVFPGES(0.637)GLAPGS(0.211)Y(0.153)KK 72.09 0.00072919 11165000 2090.1 1189.1 1483.9 1697.1 1692.9 1567.9 1972.6 2170.3 1721.2 1979.6 TRUE FALSE FALSE 1845.101646 1225.734762 1564.124123 1766.315073 1568.01814 1537.99492 2048.683843 2417.358179 1650.251407 1967.825251 0.937634907 0.622888013 0.794849096 0.897597524 0.796827939 0.781570883 1.041090331 1.228441488 0.838616847 1 10.9423864 -4.451055961 3.675554562 0.904727154 1.21686096 0.472124984 0.116048544 0.207618923 5.022862106 0.018935492 0.127961256 3.54E-05 4.451055961 0.312133806 RAS(ph)SASVPAVGASAEGTR ddPTM_HeLa_CUDC101_4h_R1 1 RASSASVPAVGASAEGTR 18 1 V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23;A0A2R8YFI4 V9GYZ0 PANK2 "Pantothenate kinase 2, mitochondrial" 1 0 RAS(0.794)S(0.188)AS(0.018)VPAVGASAEGTR 85.7 0.0036679 11010000 585.27 608.43 623.22 584.01 582.6 624.09 702.94 794.24 619.72 601.45 TRUE FALSE FALSE 516.6655378 627.1750071 656.9131583 607.8284521 539.6227587 612.1865231 730.0526313 884.6530712 594.1748793 597.8725487 0.864173374 1.049011212 1.098751163 1.016652217 0.90257156 1.023941515 1.221084047 1.479668323 0.993815288 1 9.223694161 -4.450502112 1.656468985 0.959067642 1.563717737 0.83065713 0.068580415 0.219239533 0.758262137 0.012066385 0.187165461 3.54E-05 4.450502112 0.604650094 DYSEADGLS(ph)ERTT(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 DYSEADGLSERTTPSK 16 1 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0;Q9H4G0-4;Q4VXN2;Q4VXN7;Q4VXN6;Q4VXN5;Q4VXN1;Q4VXN0 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 2 0 DYS(0.001)EADGLS(0.949)ERT(0.064)T(0.961)PS(0.025)K 109.07 0.016133 8328800 1819.2 1759.1 1319.8 1660.4 1864 1581.5 1789.9 1920.4 1294.4 1606.2 TRUE FALSE FALSE 1605.956134 1813.295786 1391.15238 1728.118289 1726.496434 1551.335522 1858.937043 2139.010573 1241.044284 1596.646251 1.005830899 1.135690379 0.871296556 1.082342621 1.081326833 0.97162131 1.164276083 1.339689723 0.777281933 1 10.64082899 -4.449846764 2.492132995 1.012361143 1.355862214 0.535712379 0.101696698 0.142636791 1.408682722 0.008905691 0.085951947 3.55E-05 4.449846764 0.343501071 TNS(ph)SSSSPVVLK ddPTM_HeLa_CUDC101_4h_R1 1 TNSSSSSPVVLK 12 0 E9PMC9;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7;Q7Z589-2 E9PMC9 C11orf30;EMSY Protein EMSY 1 0 T(0.091)NS(0.829)S(0.067)S(0.007)S(0.002)S(0.002)PVVLK 88.561 0.023376 7514700 873.91 775.69 843.56 715.89 988.39 875.23 1051.7 1183.5 969.43 921.42 TRUE FALSE FALSE 771.4715946 799.5880895 889.1654052 745.0870885 915.4784389 858.536446 1092.264421 1318.224856 929.4696851 915.9393529 0.842273664 0.87297056 0.970768864 0.813467711 0.999496785 0.937328922 1.192507362 1.439205393 1.014772083 1 9.839108266 -4.449327818 1.684428235 0.918160107 1.525543395 0.853989819 0.067287011 0.181997206 0.656621682 0.010328277 0.157813799 3.55E-05 4.449327818 0.607383288 STSLSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 STSLSSPR 8 0 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 ST(0.001)S(0.007)LS(0.074)S(0.918)PR;STS(0.001)LS(0.074)S(0.925)PR ; 97.635 0.021008 15245200 10967.9 7305.2 9501.9 9616.8 9234.1 8627.8 8045.3 3807 8822.5 9617.9 TRUE FALSE FALSE 9682.259388 7530.264553 10015.60146 10009.01467 8552.91884 8463.23909 8355.609916 4240.373492 8458.832816 9560.692303 1.012715302 0.787627539 1.047581194 1.046892249 0.894591999 0.885211951 0.873954485 0.443521594 0.884751077 1 13.22289937 -4.031488441 1.278667047 0.987499817 2.56E-25 0.741902106 0.086021999 0.73530787 0.697845238 0.011536732 1.08927583 9.30E-05 4.031488441 -0.987499817 down S(ph)SPYPSR ddPTM_HeLa_CUDC101_4h_R1 1 SSPYPSR 7 0 A0A087WT36;Q6ZRQ1 A0A087WT36 NSUN4 1 0 S(0.722)S(0.274)PYPS(0.003)R 88.819 0.034776 7534700 4367 3151.9 4198.6 3857.7 3815.4 4147.5 4531.8 5057.9 3916.3 3830.7 TRUE FALSE FALSE 3855.10688 3249.006303 4425.589016 4015.03368 3533.945543 4068.393348 4706.593044 5633.670891 3754.868456 3807.914826 1.012393148 0.853224521 1.162207985 1.054391672 0.928052676 1.068404503 1.23600271 1.479463472 0.986069444 1 11.89478549 -4.448941528 1.713356492 1.004840436 1.549887466 0.79779476 0.076010046 0.196609388 0.741284543 0.010304566 0.154631995 3.56E-05 4.448941528 0.54504703 GAVYQAPS(ph)PPPAPVGLGSMAVFR ddPTM_HeLa_CUDC101_4h_R1 2 GAVYQAPSPPPAPVGLGSMAVFR 23 0 Q13057-2;K7EPT0;K7ESK6 Q13057-2 COASY Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase 1 0 GAVY(0.03)QAPS(0.97)PPPAPVGLGSMAVFR;GAVY(0.005)QAPS(0.994)PPPAPVGLGSMAVFR ; 131.31 1.34E-07 20503100 5859.3 5228.4 4429.5 4833 5263.2 4807.9 4358.6 3805.9 5110.5 4920.1 TRUE FALSE FALSE 5172.481736 5389.480807 4668.972169 5030.11063 4874.944222 4716.197318 4526.712662 4239.148272 4899.843027 4890.835026 1.057586631 1.101955142 0.954637019 1.028476856 0.996750902 0.964292865 0.925550062 0.866753479 1.001841812 1 12.25586509 -4.446911866 0.752424055 1.029992221 0.796147658 0.673657794 0.03618522 0.963571467 0.452401179 0.006328759 0.178919526 3.57E-05 4.446911866 -0.233844563 SVWGSLAVQNS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SVWGSLAVQNSPK 13 0 P18615;P18615-3;P18615-4 P18615 NELFE Negative elongation factor E 1 0 SVWGS(0.001)LAVQNS(0.999)PK 78.814 0.033665 89574000 2474.3 2253.1 2220.9 1722.6 2253.4 2585.8 1867.8 1345.7 2597.9 2421.2 TRUE FALSE FALSE 2184.266305 2322.51534 2340.968572 1792.855074 2087.171171 2536.480173 1939.841672 1498.889048 2490.813462 2406.798595 0.907540128 0.964981177 0.972648304 0.744912797 0.867198101 1.053881359 0.805984213 0.622772945 1.034907311 1 11.2328997 -4.446759613 3.479737108 0.941073227 0.629988845 0.573974097 0.085650198 0.136297315 2.901127395 0.011712441 0.083016106 3.57E-05 4.446759613 -0.311084382 TAS(ph)FSESR ddPTM_HeLa_CUDC101_4h_R1 5 TASFSESR 8 0 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 1 0 T(0.001)AS(0.985)FS(0.01)ES(0.004)R;T(0.001)AS(0.986)FS(0.012)ES(0.001)R;T(0.013)AS(0.986)FS(0.001)ES(0.001)R;T(0.052)AS(0.948)FSESR;T(0.043)AS(0.957)FSESR ;;;; 133.99 0.0051229 4774135000 16156.8 11980.1 12343.4 12431.6 14030.8 15282.8 18508.7 22429.8 13509 14697.2 TRUE FALSE FALSE 14262.9244 12349.19268 13010.72154 12938.61438 12995.77584 14991.30605 19222.58676 24983.11777 12952.1533 14609.7804 0.976258644 0.845268878 0.890548741 0.885613201 0.889525748 1.0261144 1.315734134 1.710026919 0.886539903 1 13.83464687 -4.446087594 1.829225467 0.955608293 1.808606076 0.94773257 0.058779943 0.108322699 0.482792935 0.009891094 0.138909529 3.58E-05 4.446087594 0.852997782 GGLRPGS(ph)LDAEIDLLSSTLAELNGGR ddPTM_HeLa_CUDC101_4h_R1 3 GGLRPGSLDAEIDLLSSTLAELNGGR 26 1 Q15654 Q15654 TRIP6 Thyroid receptor-interacting protein 6 1 0 GGLRPGS(1)LDAEIDLLSSTLAELNGGR;GGLRPGS(1)LDAEIDLLSSTLAELNGGR;GGLRPGS(1)LDAEIDLLSSTLAELNGGR ;; 102.92 9.00E-07 375757000 2418.37 2167.14 1812.23 1774.89 2433.61 2136.73 1614.2 1061.69 2028.29 2072.32 TRUE FALSE FALSE 2134.892335 2233.907015 1910.204635 1847.277686 2254.087439 2095.975435 1676.460235 1182.548498 1944.683028 2059.993748 1.036358647 1.084424172 0.927286618 0.896739462 1.094220524 1.017466891 0.813818118 0.574054411 0.944023752 1 11.00842424 -4.445652872 2.275214854 1.013184628 0.543139042 0.817204815 0.062749104 0.115080173 0.900314644 0.008418421 0.09140882 3.58E-05 4.445652872 -0.470045586 NQEASLGMKT(ph)PEAPAHSEKPR ddPTM_HeLa_CUDC101_4h_R1 2 NQEASLGMKTPEAPAHSEKPR 21 2 B8ZZZ7;Q9NUQ6-2;Q9NUQ6;Q9NUQ6-4;Q9NUQ6-3 B8ZZZ7 SPATS2L SPATS2-like protein 1 0 NQEAS(0.007)LGMKT(0.993)PEAPAHSEKPR;NQEAS(0.029)LGMKT(0.97)PEAPAHS(0.001)EKPR ; 65.954 0.0032285 17226300 6450.8 6180.3 6345.5 6565.1 7048.1 6874.5 5039 3428.5 6422.7 6615.1 TRUE FALSE FALSE 5694.647003 6370.707718 6688.556924 6832.853155 6528.175705 6743.380366 5233.355918 3818.786582 6157.953588 6575.753091 0.866006817 0.968817963 1.017154512 1.039098193 0.992764724 1.025491723 0.795856512 0.580737526 0.936463627 1 12.68294041 -4.442702389 2.905630572 0.95933119 0.575057027 0.845915312 0.053025323 0.114065024 1.613807084 0.0097906 0.082002634 3.61E-05 4.442702389 -0.384274163 REDS(ph)FESLDSLGSR ddPTM_HeLa_CUDC101_4h_R1 4 REDSFESLDSLGSR 14 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;E9PMP7 E9PMS6 LMO7 LIM domain only protein 7 1 0 REDS(1)FESLDSLGSR;REDS(1)FESLDSLGSR;REDS(0.999)FES(0.001)LDSLGSR;REDS(1)FESLDSLGSR ;;; 194.32 1.31E-16 68103000 5616.7 5253.87 4889.29 4712.06 5652.1 5193.91 5351.76 5411.8 5782.4 5425.2 TRUE FALSE FALSE 4958.31894 5415.735507 5153.619807 4904.238174 5235.155844 5094.84482 5558.179176 6027.857437 5544.047025 5392.930669 0.919410844 1.004228654 0.955625081 0.90938276 0.97074414 0.944726556 1.030641689 1.11773316 1.028021194 1 12.39685377 -4.442491581 2.485581338 0.959661766 1.125975192 0.623412696 0.03618122 0.168618788 1.639921235 0.00499578 0.049462566 3.61E-05 4.442491581 0.166313425 ALEESESS(ph)QLISPPLAQAIR ddPTM_HeLa_CUDC101_4h_R1 1 ALEESESSQLISPPLAQAIR 20 0 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 ALEES(0.004)ES(0.083)S(0.661)QLIS(0.252)PPLAQAIR 74.812 0.0064196 11082000 616.41 454.34 558.24 430.76 544.29 487.92 368.68 248.64 594.26 691.86 TRUE FALSE FALSE 544.1553542 468.3376769 588.420143 448.3282547 504.1388111 478.6137389 382.9001111 276.9441726 569.7643513 687.744786 0.791216982 0.680975976 0.855579213 0.651881721 0.733031818 0.695917655 0.556747385 0.402684511 0.828453175 1 9.425729487 -4.442307736 0.135016089 1.123889523 2.17E-18 0.695658699 0.086854125 8.50563115 0.206948912 0.341054394 1.814671417 3.61E-05 4.442307736 -1.123889523 ETSVSKEDT(ph)DHEEK ddPTM_HeLa_CUDC101_4h_R1 2 ETSVSKEDTDHEEK 14 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 ETSVSKEDT(1)DHEEK;ETS(0.002)VS(0.019)KEDT(0.979)DHEEK ; 84.375 0.024168 40513000 5604.1 3473.4 4493.3 4713.6 3331.8 3387.5 3917.9 2128.37 4624.9 5789.3 TRUE FALSE FALSE 4947.195893 3580.411337 4736.221389 4905.840982 3086.019752 3322.889081 4069.014715 2370.655038 4434.259664 5754.864986 0.859654554 0.622153838 0.822994354 0.852468476 0.536245378 0.57740522 0.707056504 0.411939297 0.770523666 1 12.49056637 -4.442179792 0.15090902 1.118536518 3.01E-16 0.458954018 0.12465426 8.690909365 0.24082998 0.319535585 1.996456686 3.61E-05 4.442179792 -1.118536518 TSSPRS(ph)PPSSSEIFTPAHEENVR ddPTM_HeLa_CUDC101_4h_R1 1 TSSPRSPPSSSEIFTPAHEENVR 23 1 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 0 T(0.089)S(0.089)S(0.089)PRS(0.611)PPS(0.056)S(0.056)S(0.009)EIFT(0.001)PAHEENVR 45.913 0.036731 21734000 2412.9 2553 2135.9 2170.8 2829.3 2413.8 2541.2 2555.8 2637.1 2901.5 TRUE FALSE FALSE 2130.06352 2631.654904 2251.373215 2259.334607 2620.588176 2367.760787 2639.214935 2846.741941 2528.397622 2884.241749 0.738517678 0.912425217 0.780577154 0.78333746 0.908588254 0.820930072 0.915046367 0.986998383 0.876624722 1 11.49397638 -4.441635904 3.357778347 0.862412374 0.98537394 0.239822653 0.07351767 0.436629096 8.516897688 0.014201771 0.104692851 3.62E-05 4.441635904 0.122961566 LSSGDPSTSPSLSQT(ph)TPSKDTDDQSR ddPTM_HeLa_CUDC101_4h_R1 1 LSSGDPSTSPSLSQTTPSKDTDDQSR 26 1 Q99504-2;Q99504-4;Q99504-5;Q99504-3;Q99504 Q99504-2 EYA3 Eyes absent homolog 3 1 0 LSSGDPS(0.006)T(0.016)S(0.016)PS(0.016)LS(0.058)QT(0.414)T(0.414)PS(0.058)KDT(0.001)DDQSR 74.381 0.00028563 14265000 6010.6 5011.2 5104.5 4763.7 5097.8 5274.6 4051.4 3975.7 5180.5 5396.2 TRUE FALSE FALSE 5306.046579 5165.589132 5380.46471 4957.984276 4721.74545 5173.995793 4207.663855 4428.277618 4966.957597 5364.103162 0.989176833 0.96299213 1.003050193 0.924289509 0.880248815 0.964559338 0.784411434 0.825539234 0.925962355 1 12.38912127 -4.440940212 0.4520267 0.998659033 0.677127862 0.610595597 0.044342982 1.331066433 0.203006146 0.008226696 0.221526342 3.62E-05 4.440940212 -0.321531171 S(ph)HSAGEVGEDSR ddPTM_HeLa_CUDC101_4h_R1 1 SHSAGEVGEDSR 12 0 A0A2R8YE75;A0A2R8Y6F3;Q9P2P5 A0A2R8YE75 HECW2 E3 ubiquitin-protein ligase HECW2 1 0 S(0.754)HS(0.246)AGEVGEDSR 72.523 0.03259 6363900 1855 1461.9 1942.5 1765.7 1952 1676.6 1339.9 895.8 1993.4 1850.3 TRUE FALSE FALSE 1637.559712 1506.939406 2047.517426 1837.712878 1808.004849 1644.621648 1391.580392 997.7742511 1911.231208 1839.294333 0.890319555 0.819303022 1.113208141 0.999140184 0.982988321 0.894159036 0.756583852 0.542476662 1.039111127 1 10.84493665 -4.440006894 1.635974206 0.955738111 0.47311775 0.756217349 0.077506308 0.27419693 0.90519778 0.011464085 0.186548926 3.63E-05 4.440006894 -0.482620361 LSSS(ph)SATLLNS(ph)PDR ddPTM_HeLa_CUDC101_4h_R1 2 LSSSSATLLNSPDR 14 0 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40 Q14244-5 MAP7 Ensconsin 2 0 LS(0.269)S(0.074)S(0.591)S(0.066)AT(0.001)LLNS(1)PDR;LS(0.005)S(0.098)S(0.695)S(0.014)AT(0.189)LLNS(1)PDR ; 147.83 0.0028648 27864000 6761.3 5471.7 5343.3 5435.8 6826.2 8460.9 9322.3 11460.5 4997.2 5636.9 TRUE FALSE FALSE 5968.750663 5640.276591 5632.174961 5657.49542 6322.644826 8299.522429 9681.864234 12765.117 4791.213301 5603.371468 1.065207027 1.006586235 1.005140386 1.009659176 1.128364389 1.481165844 1.727864071 2.278113644 0.855059017 1 12.45207942 -4.439230262 0.953582458 1.021126123 2.715087493 0.973255107 0.069052732 0.121743403 0.100764531 0.007659805 0.198108502 3.64E-05 4.439230262 1.69396137 up VASET(ph)HS(ph)EGSEYEELPK ddPTM_HeLa_CUDC101_4h_R1 1 VASETHSEGSEYEELPK 17 0 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 2 0 VAS(0.062)ET(0.94)HS(0.996)EGS(0.001)EYEELPK 81.992 0.013915 13599000 3535.3 3545 2659.8 2581.3 3661.4 3218.6 3257 3221.1 3198.5 3337.4 TRUE FALSE FALSE 3120.897493 3654.217248 2803.596833 2686.576571 3391.305817 3157.210568 3382.623581 3587.777004 3066.656476 3317.548996 0.940723859 1.101481019 0.845080762 0.809807654 1.022232323 0.951669612 1.01961526 1.081454112 0.924374133 1 11.69590206 -4.43843198 2.106461543 0.962242337 1.093838895 0.208507674 0.079741956 0.635584417 4.046161941 0.011227037 0.136764126 3.64E-05 4.43843198 0.131596558 SATDGNTSTT(ph)PPTS(ph)AK ddPTM_HeLa_CUDC101_4h_R1 1 SATDGNTSTTPPTSAK 16 0 A0A669KAX4;Q13620-1;Q13620;A0A669KAU9;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 2 0 S(0.001)AT(0.004)DGNT(0.198)S(0.194)T(0.257)T(0.348)PPT(0.283)S(0.716)AK 100.69 0.015276 20712000 5736 4641.6 4512.8 4983.3 5808.3 4935.2 3753 2313.5 5240.1 4999 TRUE FALSE FALSE 5063.634775 4784.602194 4756.775618 5186.540514 5379.833281 4841.069283 3897.754467 2576.859489 5024.10086 4969.265726 1.018990542 0.96283887 0.957239134 1.043723721 1.082621373 0.974202136 0.784372316 0.518559407 1.011034857 1 12.27881698 -4.437067392 1.95456755 1.009424882 0.461217291 0.950352419 0.035201633 0.083202226 0.435531849 0.005356443 0.071676497 3.66E-05 4.437067392 -0.54820759 S(ph)AVFPGEGK ddPTM_HeLa_CUDC101_4h_R1 1 SAVFPGEGK 9 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(1)AVFPGEGK 89.805 0.028949 29015000 4056.8 3352.1 3509.2 3634 3965 4015.6 3098.9 2340.8 3871.9 3713.2 TRUE FALSE FALSE 3581.268054 3455.374228 3698.917967 3782.210227 3672.509849 3939.00912 3218.425611 2607.26721 3712.298643 3691.113721 0.970240508 0.936133235 1.002114334 1.024679951 0.994959822 1.067160055 0.871938893 0.706363284 1.005739439 1 11.84984047 -4.436312655 3.193586669 0.990908486 0.706622179 0.87298379 0.034750229 0.068816188 1.193174698 0.00485948 0.037857967 3.66E-05 4.436312655 -0.284286307 NSATFKS(ph)FEDR ddPTM_HeLa_CUDC101_4h_R1 1 NSATFKSFEDR 11 1 O43399-2;O43399-4;O43399;O43399-3;O43399-5;O43399-7;O43399-6 O43399-2 TPD52L2 Tumor protein D54 1 0 NSAT(0.01)FKS(0.99)FEDR 124.81 0.016002 184930000 2899.7 2228.1 1696.4 2082.8 2918 2554.9 2787.9 2952 2456.3 2920.2 TRUE FALSE FALSE 2559.801562 2296.74512 1788.112515 2167.745587 2702.744953 2506.169539 2895.430237 3288.043748 2355.050274 2902.830521 0.881829491 0.791208823 0.615989291 0.7467696 0.931072253 0.863353724 0.997450666 1.132702624 0.811294444 1 11.50324463 -4.436157267 2.475433662 0.889254253 1.146721158 0.352887803 0.112309359 0.421984687 4.031631802 0.018963286 0.192379306 3.66E-05 4.436157267 0.257466906 AAKPGPAEAPSPT(ph)ASPSGDASPPATAPYDPR ddPTM_HeLa_CUDC101_4h_R1 2 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 AAKPGPAEAPS(0.058)PT(0.909)AS(0.023)PS(0.009)GDASPPATAPYDPR;AAKPGPAEAPS(0.184)PT(0.778)AS(0.024)PS(0.012)GDAS(0.001)PPATAPYDPR ; 100.86 2.30E-09 360548000 3091.19 3088 2891.78 2320.52 3318.3 2855.83 3256.4 3568.55 2962.28 3054.2 TRUE FALSE FALSE 2728.845394 3183.13762 3048.118374 2415.160836 3073.51562 2801.359801 3382.000439 3974.779307 2840.173565 3036.033483 0.898819269 1.048452739 1.003980487 0.795498748 1.012345759 0.922703856 1.113953604 1.309201407 0.935488222 1 11.56797199 -4.435909288 2.351395081 0.953063917 1.334666455 0.723311773 0.069213627 0.160878976 1.351444604 0.0098576 0.106239011 3.67E-05 4.435909288 0.381602538 SET(ph)SPVAPR ddPTM_HeLa_CUDC101_4h_R1 4 SETSPVAPR 9 0 A0A2R8Y661;H0Y8H7;A0A2R8YGD3;Q9Y4G8;H0Y8T6 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 S(0.004)ET(0.952)S(0.044)PVAPR;S(0.323)ET(0.664)S(0.013)PVAPR;S(0.002)ET(0.931)S(0.066)PVAPR;SET(0.933)S(0.067)PVAPR ;;; 142.98 0.0070679 405842000 10700.1 10233.5 9762.9 9888 10755.1 9743.9 10321.2 10506 11184.4 10472.1 TRUE FALSE FALSE 9445.850498 10548.78201 10290.71191 10291.27538 9961.7177 9558.051342 10719.29214 11701.96057 10723.3743 10409.81148 0.907398805 1.013349956 0.988558911 0.98861304 0.956954669 0.918177179 1.029729708 1.124128001 1.030121853 1 13.34565632 -4.435753637 3.205170337 0.962164305 1.123911494 0.553642044 0.03928518 0.143141524 2.499206514 0.005770166 0.044868554 3.67E-05 4.435753637 0.161747189 SGFGEISS(ph)PVIR ddPTM_HeLa_CUDC101_4h_R1 2 SGFGEISSPVIR 12 0 G3V1T4;P57740 G3V1T4 NUP107 Nuclear pore complex protein Nup107 1 0 SGFGEIS(0.069)S(0.931)PVIR;SGFGEIS(0.137)S(0.863)PVIR ; 173.76 6.28E-07 340820000 10351 8889.6 8685.5 8829 9410 8690.9 8102.5 3841.9 9899 9689.7 TRUE FALSE FALSE 9137.671471 9163.478039 9155.064402 9189.084782 8715.843047 8525.135563 8415.016139 4279.246367 9490.95903 9632.065233 0.948672092 0.951351327 0.950477824 0.954009816 0.904877909 0.885078678 0.873646091 0.444270908 0.985350369 1 13.23362945 -4.030103668 1.497002267 0.963404408 9.41E-20 0.953483458 0.033086547 0.327402867 0.430736886 0.005452795 0.548314031 9.33E-05 4.030103668 -0.963404408 down KPVTVSPT(ph)TPTSPT(ph)EGEAS ddPTM_HeLa_CUDC101_4h_R1 1 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 2 0 KPVT(0.003)VS(0.094)PT(0.855)T(0.046)PT(0.004)S(0.04)PT(0.913)EGEAS(0.046) 85.362 0.0033852 33880000 1315.2 1337.2 1022.9 1120.5 1489.5 1357.7 1480.7 1538.1 1353.4 1247.2 TRUE FALSE FALSE 1161.03425 1378.397547 1078.201068 1166.198833 1379.622553 1331.804135 1537.811095 1713.191087 1297.612279 1239.781599 0.936482886 1.111806747 0.869670165 0.940648606 1.112794829 1.074224796 1.240388707 1.3818491 1.046645861 1 10.27587028 -4.434157367 0.877691762 0.972144057 1.549794719 0.762234955 0.070660658 0.54296411 0.364740617 0.010339468 0.282895156 3.68E-05 4.434157367 0.577650662 ATSGS(ph)SLPVGINR ddPTM_HeLa_CUDC101_4h_R1 1 ATSGSSLPVGINR 13 0 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 ATS(0.001)GS(0.5)S(0.5)LPVGINR 148.89 0.00039587 27379000 2596.8 1917.2 2298.8 2285.1 2526.1 2411.4 2041.2 1707.3 2457.1 2251.9 TRUE FALSE FALSE 2292.40704 1976.26666 2423.080081 2378.296255 2339.754636 2365.406563 2119.929768 1901.652131 2355.817298 2238.505599 1.024079208 0.88285089 1.082454332 1.062448205 1.045230638 1.056690036 0.947029022 0.849518595 1.052406257 1 11.12832021 -4.433089644 3.149010599 1.015890605 0.848973015 0.505910658 0.053743371 0.176525306 2.953144832 0.007164295 0.056978965 3.69E-05 4.433089644 -0.16691759 SDS(ph)LLSFR ddPTM_HeLa_CUDC101_4h_R1 4 SDSLLSFR 8 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 S(0.012)DS(0.988)LLSFR;S(0.024)DS(0.976)LLSFR;S(0.153)DS(0.847)LLSFR;S(0.034)DS(0.854)LLS(0.112)FR ;;; 150.81 0.0021337 221155000 23119.9 18847 16471.7 16250.7 19673.5 21187.3 19643.5 20173.1 19536.2 19400.4 TRUE FALSE FALSE 20409.82037 19427.65373 17362.20993 16913.47379 18222.2251 20783.18755 20401.15638 22469.52416 18730.90957 19285.00556 1.058325874 1.007396844 0.900295822 0.877027167 0.94489084 1.077686366 1.057876614 1.165129255 0.971268041 1 14.23519194 -4.432641227 1.532474818 1.002129031 1.188408238 0.452901136 0.061296545 0.743925563 2.0500885 0.010515864 0.188064969 3.69E-05 4.432641227 0.186279206 GQDVVQEWQETSPT(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 GQDVVQEWQETSPTR 15 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GQDVVQEWQETS(0.105)PT(0.895)R 162.76 0.0002147 3382300 1072.8 982.84 942.36 1130.6 1038.8 852.37 800.98 542.58 868.39 1020.4 TRUE FALSE FALSE 947.0480103 1013.120135 993.3068321 1176.710755 962.1697936 836.1124624 831.8740669 604.345114 832.5945966 1014.330615 0.933667974 0.998806622 0.979273244 1.160086008 0.948576114 0.82429974 0.820121225 0.595806835 0.820831575 1 9.986312252 -4.43212161 1.135943043 0.983524926 0.499763353 0.655678268 0.084512628 0.472465987 0.601727292 0.010709259 0.251404476 3.70E-05 4.43212161 -0.483761573 SMSAPS(ph)DLEMIGNEDLEFTR ddPTM_HeLa_CUDC101_4h_R1 1 SMSAPSDLEMIGNEDLEFTR 20 0 F8VWT9;J3KPF0;Q9Y4D8-2;Q9Y4D8-4;Q9Y4D8 F8VWT9 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 1 0 S(0.013)MS(0.19)APS(0.797)DLEMIGNEDLEFT(0.001)R 67.252 0.011673 4817700 3053.2 2093.7 1977.3 2324.8 2756.4 2694.4 2913.5 3078 2418.2 2081.1 TRUE FALSE FALSE 2695.308524 2158.204415 2084.198819 2419.615393 2553.065864 2643.008809 3025.874671 3428.387078 2318.520772 2068.721525 1.302886102 1.043255165 1.007481575 1.169618706 1.234127374 1.277604925 1.462678584 1.657249194 1.120750543 1 11.01452374 -4.431126177 0.914467107 1.128369386 1.866343061 0.814982486 0.085713504 0.75741953 0.560821396 0.019302536 0.521269265 3.71E-05 4.431126177 0.737973675 APY(ph)PQPPT(ph)VRLNPT(ph)AS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 APYPQPPTVRLNPTASR 17 1 Q9HDB9 Q9HDB9 ERVK-5 Endogenous retrovirus group K member 5 Gag polyprotein 4 0 APY(1)PQPPT(1)VRLNPT(1)AS(1)R 44.541 0.003332 0 2404.5 2191.4 1847.2 2053.6 2403.4 1982 1710 1262 2032.6 2081.7 TRUE FALSE FALSE 2122.648155 2258.914437 1947.065219 2137.354684 2226.10597 1944.196652 1775.955273 1405.660979 1948.815368 2069.317956 1.025771873 1.091622692 0.940921241 1.032878818 1.075767967 0.939535003 0.858232186 0.679287093 0.941767002 1 11.01493962 -4.430779406 1.488307028 1.018154413 0.611454131 0.823823348 0.048263114 0.201197767 0.51250844 0.005878946 0.109022444 3.71E-05 4.430779406 -0.406700282 TGPLSTSS(ph)PSRR ddPTM_HeLa_CUDC101_4h_R1 1 TGPLSTSSPSRR 12 1 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 0 TGPLS(0.001)T(0.001)S(0.033)S(0.847)PS(0.117)RR 96.756 0.029295 15272000 2749.4 2484.3 2471.4 2101.3 2646.8 2499.5 2697.9 2769.2 2942 2961.7 TRUE FALSE FALSE 2427.1195 2560.838338 2605.01136 2187.000097 2451.550837 2451.826202 2801.958907 3084.434535 2820.729515 2944.083677 0.824405746 0.869825256 0.884829253 0.742845767 0.832704198 0.83279773 0.951725295 1.04767217 0.958101 1 11.52360296 -4.430223469 3.432303279 0.88677057 1.045680935 0.372211038 0.070045072 0.293133805 5.854470795 0.012410285 0.092159535 3.71E-05 4.430223469 0.158910365 YGS(ph)PPQRDPNWNGER ddPTM_HeLa_CUDC101_4h_R1 2 YGSPPQRDPNWNGER 15 1 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 0 YGS(1)PPQRDPNWNGER;Y(0.006)GS(0.994)PPQRDPNWNGER ; 151.49 0.00095356 43642000 4464.1 3940.9 3538 3618.9 3920.1 3897.8 3951.5 3949.9 4257.6 3975.9 TRUE FALSE FALSE 3940.824965 4062.314458 3729.274982 3766.494384 3630.922033 3823.455959 4103.910679 4399.54065 4082.099926 3952.25117 0.997108938 1.027848252 0.943582485 0.952999752 0.918697187 0.96741219 1.038372943 1.113173344 1.032854379 1 11.94845892 -4.430171582 2.934277132 0.986262018 1.11549384 0.580701259 0.034991784 0.174789763 2.48731824 0.004999458 0.042904975 3.71E-05 4.430171582 0.129231822 SYSPDGKES(ph)PSDK ddPTM_HeLa_CUDC101_4h_R1 1 SYSPDGKESPSDK 13 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 0 S(0.019)YS(0.046)PDGKES(0.926)PS(0.009)DK 126.71 0.0075379 18638000 2835.1 2686.9 2484.1 2421.5 3043.1 2503.1 2723.4 2795.9 2859.5 2755.1 TRUE FALSE FALSE 2502.773876 2769.680204 2618.39796 2520.259237 2818.616576 2455.357538 2828.44245 3114.173955 2741.6302 2738.712543 0.913850518 1.011307379 0.956068926 0.920235036 1.029175765 0.89653715 1.032763536 1.137094129 1.001065339 1 11.41928213 -4.430086454 3.397586259 0.960759648 1.135466578 0.590568618 0.043505745 0.131714963 2.575778872 0.006065671 0.045438492 3.71E-05 4.430086454 0.17470693 AVLSDS(ph)PQLSEGK ddPTM_HeLa_CUDC101_4h_R1 2 AVLSDSPQLSEGK 13 0 Q7Z4H7-3;Q7Z4H7;Q5VY60;Q5SYF9;Q7Z4H7-2 Q7Z4H7-3 HAUS6 HAUS augmin-like complex subunit 6 1 0 AVLS(0.056)DS(0.944)PQLS(0.001)EGK;AVLS(0.001)DS(0.97)PQLS(0.029)EGK ; 193.98 2.43E-16 24146000 9497.4 7840.9 7835.1 7841.2 9331.1 8814.3 6662.2 4537.7 8566.7 8256.8 TRUE FALSE FALSE 8384.129169 8082.468835 8258.689206 8160.998029 8642.763343 8646.181913 6919.163286 5054.253426 8213.577 8207.688186 1.021497038 0.984743652 1.006213811 0.994311412 1.053008246 1.053424755 0.843010008 0.61579501 1.000717475 1 13.00276021 -4.430083336 2.595276725 1.012383385 0.596731288 0.958969519 0.025656668 0.047956147 0.510769593 0.003696127 0.036207234 3.71E-05 4.430083336 -0.415652097 ITEAPAS(ph)EKEIVEVK ddPTM_HeLa_CUDC101_4h_R1 1 ITEAPASEKEIVEVK 15 1 Q5JSL0;Q5JSK6;P82970;Q5JSK8;Q5JSK9 Q5JSL0 HMGN5 High mobility group nucleosome-binding domain-containing protein 5 1 0 IT(0.002)EAPAS(0.998)EKEIVEVK 73.953 0.017922 8764500 800.46 682.43 710.96 823.5 973.81 894.75 1241.7 1581 985.97 1229 TRUE FALSE FALSE 706.6312922 703.4548594 749.3966481 857.0858895 901.9739764 877.6841345 1289.592785 1760.974649 945.3278993 1221.689853 0.578404814 0.575804782 0.613409898 0.701557672 0.738300293 0.718418126 1.055581154 1.441425289 0.773787141 1 10.25466236 -4.428953679 2.297354759 0.750963565 1.496997747 0.775667791 0.122406011 0.227090605 1.783236137 0.025742145 0.291683343 3.72E-05 4.428953679 0.746034183 LNRSDS(ph)DSSTLSK ddPTM_HeLa_CUDC101_4h_R1 2 LNRSDSDSSTLSK 13 1 H0YBE8;H3BLZ3;Q8IX03;Q8IX03-2;H0YAU4 H0YBE8 WWC1 Protein KIBRA 1 0 LNRS(0.001)DS(0.968)DS(0.028)S(0.002)TLSK;LNRS(0.001)DS(0.993)DS(0.006)S(0.001)TLSK ; 171.76 2.09E-06 24322400 4042.4 5120.6 4257.3 4201.5 6238.5 4929.4 5287.1 6553.9 4992.6 2099.6 TRUE FALSE FALSE 3568.556 5278.359617 4487.462516 4372.85533 5778.298284 4835.379908 5491.025218 7299.969484 4786.802915 2087.111486 1.709806124 2.529026194 2.150082804 2.095170938 2.768562352 2.316780843 2.630920895 3.497642332 2.293506096 1 11.02729195 -4.428128971 0.111213024 1.81E-14 5.815604905 0.369589748 0.497044943 10.45300738 0.203496464 2.455675023 10.16245115 3.73E-05 4.428128971 5.815604905 SQSS(ph)DTEQQSPTSGGGK ddPTM_HeLa_CUDC101_4h_R1 6 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SQS(0.011)S(0.983)DT(0.006)EQQSPTSGGGK;SQS(0.013)S(0.975)DT(0.013)EQQSPTSGGGK;S(0.013)QS(0.054)S(0.914)DT(0.018)EQQSPTSGGGK;S(0.001)QS(0.193)S(0.8)DT(0.005)EQQSPTSGGGK;S(0.025)QS(0.064)S(0.911)DTEQQSPTSGGGK;SQS(0.018)S(0.982)DTEQQSPTSGGGK ;;;;; 349.19 6.45E-218 383398600 10705.67 9290.98 8850.07 9093.25 10074.26 9722.86 10653.75 11531.85 10374.28 10394.23 TRUE FALSE FALSE 9450.767591 9577.224081 9328.531554 9464.112039 9331.101911 9537.412645 11064.66871 12844.58919 9946.647787 10332.40466 0.914672615 0.92691144 0.902842258 0.91596413 0.903091025 0.923058374 1.070870632 1.243136483 0.962665335 1 13.33488843 -4.425716391 2.473228635 0.943394723 1.261792354 0.904679639 0.031539981 0.113955313 1.072542099 0.006177116 0.064831894 3.75E-05 4.425716391 0.31839763 VLS(ph)RNSADDEELTNDSLTLSQSK ddPTM_HeLa_CUDC101_4h_R1 2 VLSRNSADDEELTNDSLTLSQSK 23 1 A0A0U1RRH6;O94880 A0A0U1RRH6 PHF14 PHD finger protein 14 1 0 VLS(0.552)RNS(0.448)ADDEELTNDSLTLSQSK;VLS(0.5)RNS(0.5)ADDEELTNDSLTLSQSK ; 114.37 2.48E-06 48610000 3425.6 3448 3012.29 3161 4065.3 3279.3 2867.08 2251.29 3631.1 3497.3 TRUE FALSE FALSE 3024.056361 3554.228793 3175.143509 3289.919243 3765.410918 3216.752816 2977.664236 2507.567754 3481.424521 3476.497904 0.869857093 1.022358963 0.913316676 0.946331433 1.083104613 0.925285418 0.856512593 0.721291318 1.001417121 1 11.763419 -4.425554041 2.154665245 0.9518148 0.70039583 0.623930775 0.059759107 0.279951293 1.857766151 0.009506036 0.117647465 3.75E-05 4.425554041 -0.251418969 NLEEEENLGKGEYQESLRS(ph)LEEEGQELPQSADVQR ddPTM_HeLa_CUDC101_4h_R1 3 NLEEEENLGKGEYQESLRSLEEEGQELPQSADVQR 35 2 P48681 P48681 NES Nestin 1 0 NLEEEENLGKGEY(0.055)QES(0.21)LRS(0.735)LEEEGQELPQSADVQR;NLEEEENLGKGEY(0.061)QES(0.07)LRS(0.868)LEEEGQELPQSADVQR;NLEEEENLGKGEY(0.03)QES(0.245)LRS(0.713)LEEEGQELPQS(0.012)ADVQR ;; 70.154 1.58E-06 53187000 2925.39 2936.41 2560.57 2523.65 3139.67 2693.81 3196.47 3523 3147.1 3343 TRUE FALSE FALSE 2582.480219 3026.877312 2699.00216 2626.575355 2908.062799 2642.430062 3319.758919 3924.04408 3017.375206 3323.115687 0.777126186 0.910855232 0.81219025 0.790395401 0.875101282 0.795166437 0.998989873 1.180832823 0.907995836 1 11.6983208 -4.425532519 3.116441922 0.87384793 1.183972072 0.681651908 0.067951535 0.175070873 2.831427696 0.012888595 0.105474358 3.75E-05 4.425532519 0.310124142 S(ph)PPSSSEIFTPAHEENVR ddPTM_HeLa_CUDC101_4h_R1 4 SPPSSSEIFTPAHEENVR 18 0 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 0 S(0.996)PPS(0.003)SSEIFTPAHEENVR;S(0.563)PPS(0.193)S(0.193)S(0.051)EIFT(0.001)PAHEENVR;S(1)PPSSSEIFTPAHEENVR;S(0.674)PPS(0.08)S(0.053)S(0.192)EIFTPAHEENVR ;;; 271.91 1.71E-86 207481600 3354.08 3076.21 3139.44 2811.37 3326.08 3355.86 3174.77 2972.74 3144.44 2819.16 TRUE FALSE FALSE 2960.919827 3170.984384 3309.167623 2926.02982 3080.721705 3291.852562 3297.221942 3311.144705 3014.824852 2802.391511 1.05656894 1.131527972 1.180837014 1.044118857 1.099318811 1.174658341 1.17657434 1.181542512 1.075804305 1 11.45244281 -4.424871385 0.097996541 0.879293319 1.46175498 0.446447416 0.046906497 21.63067534 0.366553024 0.549667023 1.955259147 3.76E-05 4.424871385 0.582461661 LDVTILSPS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 LDVTILSPSR 10 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 1 0 LDVTILS(0.124)PS(0.876)R 136.01 0.0016673 35762000 3491.9 2990 2620.2 2674.9 2991.1 2540.4 1974.4 1409.7 3231 2747.8 TRUE FALSE FALSE 3082.584775 3082.118356 2761.855938 2783.993984 2770.452512 2491.946103 2050.553269 1570.17455 3097.816812 2731.455963 1.128550054 1.128379296 1.011129586 1.019234438 1.014276836 0.912314215 0.750718041 0.574848934 1.134126581 1 11.41545445 -4.424712176 0.906526726 1.064040193 0.373675512 0.929703806 0.045276876 0.374382389 0.269625589 0.008706807 0.239944541 3.76E-05 4.424712176 -0.69036468 SIYDDIS(ph)SPGLGSTPLT(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 SIYDDISSPGLGSTPLTSR 19 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4 Q8NFH5-2 NUP35 Nucleoporin NUP53 2 0 S(0.005)IYDDIS(0.749)S(0.247)PGLGS(0.001)T(0.044)PLT(0.89)S(0.066)R 120.74 0.00020888 11372000 955.07 975.73 907.97 1163.6 981.8 1242.9 711.35 384.21 1253.7 912.44 TRUE FALSE FALSE 843.1181424 1005.791085 957.0576047 1211.056638 909.37457 1219.193753 738.7870078 427.9469134 1202.021955 907.0127663 0.929554879 1.108905103 1.055175451 1.335214544 1.002603937 1.34418588 0.814527684 0.471820165 1.325253624 1 9.824979047 -4.423999932 3.873558529 1.032973747 0.489282319 0.543478337 0.172905924 0.133990844 3.328195213 0.021506674 0.147490364 3.77E-05 4.423999932 -0.543691428 S(ph)LIVEGK ddPTM_HeLa_CUDC101_4h_R1 3 SLIVEGK 7 0 D6R9L5;H0Y8X0;A0A494C198;B4DFG0;H0Y993;P35659;A0A494C028 D6R9L5 DEK Protein DEK 1 0 S(1)LIVEGK;S(1)LIVEGK;S(1)LIVEGK ;; 93.649 0.029263 49965600 18684 13475.5 12585.3 13525.8 12386.2 14257.7 11674.5 4710 16492.4 14748.4 TRUE FALSE FALSE 16493.88984 13890.66418 13265.69939 14077.44059 11472.4947 13985.75813 12124.78938 5246.167362 15812.57629 14660.67586 1.125042938 0.94747775 0.904849102 0.960217709 0.782535185 0.953964078 0.827027996 0.357839394 1.078570759 1 13.83966399 -4.027949923 0.624422893 1.039019917 2.54E-37 0.744664236 0.102817181 1.657953582 0.362665944 0.019423206 1.31403192 9.38E-05 4.027949923 -1.039019917 down SQDATFS(ph)PGSEQAEK ddPTM_HeLa_CUDC101_4h_R1 3 SQDATFSPGSEQAEK 15 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SQDAT(0.004)FS(0.911)PGS(0.085)EQAEK;SQDAT(0.057)FS(0.936)PGS(0.007)EQAEK;SQDAT(0.064)FS(0.932)PGS(0.004)EQAEK ;; 252.79 3.75E-56 129639200 8488.8 7637 6524.5 5934.6 6689.9 6301.3 4642.5 4394.4 8320.5 8295.4 TRUE FALSE FALSE 7493.755732 7872.286918 6877.234206 6176.63864 6196.399405 6181.113201 4821.56278 4894.640733 7977.525468 8246.058592 0.908768189 0.954672688 0.834002588 0.749041323 0.751437712 0.749583954 0.584711196 0.593573363 0.967434973 1 13.009489 -4.423687179 0.278966045 1.002092298 0.244091417 0.924722023 0.038853285 1.387519357 0.087992092 0.021843795 0.356943002 3.77E-05 4.423687179 -0.758000881 QFLISPPAS(ph)PPVGWK ddPTM_HeLa_CUDC101_4h_R1 1 QFLISPPASPPVGWK 15 0 H0YF64;V9GYW9;E9PD55;E9PDJ2;Q9UKA8-6;P53805-4;P53805-3;Q9UKA8-5;P53805-2;Q9UKA8-2;Q9UKA8;P53805 H0YF64 RCAN3;RCAN1 Calcipressin-3;Calcipressin-1 1 0 QFLIS(0.093)PPAS(0.907)PPVGWK 113.28 0.00193 19129000 3072 2901.1 2382.4 2504.4 3656.8 2646.3 2426.3 1788.8 3119.1 3193.8 TRUE FALSE FALSE 2711.904817 2990.479452 2511.19975 2606.540257 3387.045149 2595.826237 2519.883204 1992.429761 2990.529378 3174.803136 0.854196213 0.941941697 0.790978099 0.821008468 1.066852023 0.817633764 0.793713215 0.627575845 0.941957422 1 11.63245142 -4.422572593 1.472892189 0.918813959 0.569915955 0.538064021 0.081000691 0.537439492 1.317904848 0.012948824 0.249200977 3.78E-05 4.422572593 -0.348898004 ALYRRLAT(ph)VHMSRMINK ddPTM_HeLa_CUDC101_4h_R1 1 ALYRRLATVHMSRMINK 17 3 K7EQQ1;O96005-3;O96005-4;O96005 K7EQQ1 CLPTM1 Cleft lip and palate transmembrane protein 1 1 0 ALY(0.464)RRLAT(0.535)VHMSRMINK 47.545 0.0032998 0 1337.3 1559.8 1475.9 1146.9 1468.9 1336 1411.7 1450.6 1456.3 1498.1 TRUE FALSE FALSE 1180.543721 1607.855589 1555.691618 1193.675539 1360.542173 1310.518026 1466.149742 1615.73044 1396.270698 1489.189235 0.792742584 1.079685208 1.044656772 0.801560683 0.913612684 0.880021152 0.984528835 1.084973221 0.937604614 1 10.54031138 -4.421894745 2.960053515 0.915588695 1.088907952 0.19679274 0.089974889 0.383576943 5.508397157 0.014680502 0.127686661 3.79E-05 4.421894745 0.173319257 QLPLEPES(ph)PSGQVGPRPAPPQEES(ph)PSSEAK ddPTM_HeLa_CUDC101_4h_R1 1 QLPLEPESPSGQVGPRPAPPQEESPSSEAK 30 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 QLPLEPES(0.925)PS(0.14)GQVGPRPAPPQEES(0.712)PS(0.192)S(0.031)EAK 58.47 0.0023425 25791000 2219 1965.5 2061.5 1989.3 2196.9 1850.6 2053.1 2138.6 2177.9 1920.3 TRUE FALSE FALSE 1958.892184 2026.054725 2172.950926 2070.432252 2034.839064 1815.302888 2132.288755 2382.049579 2088.12604 1908.87797 1.026200844 1.061385147 1.138339359 1.084633112 1.065986981 0.950979013 1.117037751 1.247879444 1.09390232 1 10.89850916 -4.421656215 3.403543138 1.030745114 1.246767167 0.517327106 0.053652489 0.135194222 2.614131474 0.007636433 0.058158263 3.79E-05 4.421656215 0.216022053 VTPTEEHVEGPLPSPVT(ph)NGTSPAQLNGGSACSSR ddPTM_HeLa_CUDC101_4h_R1 1 VTPTEEHVEGPLPSPVTNGTSPAQLNGGSACSSR 34 0 Q15599-2;H3BUQ9;H3BN50;H3BQS0;Q15599-3;Q15599 Q15599-2;H3BN50 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 0 VTPTEEHVEGPLPSPVT(0.399)NGT(0.29)S(0.29)PAQLNGGS(0.02)ACS(0.001)SR 102.6 1.68E-12 21639000 1342.4 1274.3 1152 1020.3 1432.6 1327.1 962.56 652.11 1298.8 1119 TRUE FALSE FALSE 1185.045907 1313.559673 1214.280605 1061.912244 1326.919952 1301.787779 999.6862616 726.3435665 1245.262914 1112.344138 1.065359061 1.180893239 1.091641123 0.954661608 1.192904162 1.170310279 0.898720304 0.652984577 1.119494293 1 10.11938748 -4.419596414 3.211273719 1.059930897 0.650174255 0.732932926 0.081372073 0.118572065 2.027819519 0.011863386 0.095707857 3.81E-05 4.419596414 -0.409756642 (ac)SEKS(ph)VEAAAELSAK ddPTM_HeLa_CUDC101_4h_R1 1 SEKSVEAAAELSAK 14 1 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 1 0 S(0.433)EKS(0.567)VEAAAELSAK 61.657 0.0001417 57495000 3398.3 2809.5 2791.8 2868 3153.3 3070.8 3498.5 3886.3 3252.4 3515.5 TRUE FALSE FALSE 2999.956425 2896.057365 2942.733153 2984.969437 2920.687341 3012.229606 3633.438317 4328.700683 3118.334695 3494.58965 0.858457423 0.828726018 0.842082604 0.854168797 0.835774049 0.861969475 1.039732467 1.238686403 0.89233215 1 11.77090734 -4.419583303 2.689029235 0.901670416 1.254083314 0.808004763 0.054688713 0.161093293 1.845490342 0.010873625 0.105657797 3.81E-05 4.419583303 0.352412898 KPSAPS(ph)PPDQTPEEDLVIVK ddPTM_HeLa_CUDC101_4h_R1 1 KPSAPSPPDQTPEEDLVIVK 20 1 Q15776;Q15776-2 Q15776 ZKSCAN8 Zinc finger protein with KRAB and SCAN domains 8 1 0 KPS(0.045)APS(0.952)PPDQT(0.003)PEEDLVIVK 57.829 0.015771 8282100 2034.1 1673.6 1379.7 1917.4 1548.2 1821 1351.4 943.97 1217.5 1497.1 TRUE FALSE FALSE 1795.665881 1725.161632 1454.290755 1995.59986 1433.99237 1786.267459 1403.523951 1051.427729 1167.314135 1488.195183 1.206606433 1.15923076 0.977217755 1.340953044 0.963578156 1.200291118 0.943104753 0.706511983 0.784382417 1 10.53934804 -4.419564423 2.887232618 1.108565726 0.693792897 0.344495179 0.152367923 0.18247799 2.469208838 0.016085594 0.144543994 3.81E-05 4.419564423 -0.414772829 GSTIYTGYPLS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 2 GSTIYTGYPLSPTK 14 0 H3BLW0;Q5SQL3;J3KP92;Q86Z02-4;Q86Z02-3;Q86Z02 H3BLW0 HIPK1 Homeodomain-interacting protein kinase 1 1 0 GSTIYTGYPLS(0.83)PT(0.17)K;GSTIYTGYPLS(0.847)PT(0.152)K ; 150.34 0.00022741 33800000 8821.9 8291.4 7736.6 8113.4 8912 7194.8 5963.2 3872.4 6975.3 7146.5 TRUE FALSE FALSE 7787.810255 8546.848206 8154.863998 8444.299521 8254.579515 7057.571177 6193.202622 4313.218363 6687.775182 7103.9923 1.096258262 1.203104937 1.14792692 1.188669577 1.161963466 0.993465488 0.871791854 0.607154144 0.941410815 1 12.7944143 -4.419560655 1.657468831 1.083506089 0.524452465 0.782259841 0.081357077 0.269310302 0.894597445 0.012620563 0.216667702 3.81E-05 4.419560655 -0.559053624 AAAAAATAPPS(ph)PGPAQPGPR ddPTM_HeLa_CUDC101_4h_R1 2 AAAAAATAPPSPGPAQPGPR 20 0 Q6SPF0 Q6SPF0 SAMD1 Atherin 1 0 AAAAAAT(0.009)APPS(0.991)PGPAQPGPR;AAAAAATAPPS(1)PGPAQPGPR ; 252.79 3.44E-57 248310000 11054.9 10018.8 10028.5 9166.9 10523.7 10240.2 10298.4 10456 9525.9 10070.3 TRUE FALSE FALSE 9759.06138 10327.46735 10570.67104 9540.765805 9747.387617 10044.88525 10695.61274 11646.26878 9133.23837 10010.40141 0.974892113 1.031673649 1.055968748 0.953085238 0.97372595 1.003444801 1.068449935 1.16341676 0.912374839 1 13.28921221 -4.418185321 1.941741959 0.992692662 1.186225111 0.679991096 0.037888841 0.19778844 0.992028211 0.004223897 0.060742429 3.82E-05 4.418185321 0.193532449 NSLLAGGDDDTMSVIS(ph)GISSR ddPTM_HeLa_CUDC101_4h_R1 2 NSLLAGGDDDTMSVISGISSR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 0 NSLLAGGDDDT(0.001)MS(0.013)VIS(0.798)GIS(0.176)S(0.012)R;NSLLAGGDDDTMSVIS(0.999)GIS(0.001)S(0.001)R ; 196.4 1.02E-18 45766000 2359.63 2010.03 1804.98 2008.58 2647.57 2436.18 2803.54 3079.6 2299.56 2376.32 TRUE FALSE FALSE 2083.037748 2071.956642 1902.562679 2090.498574 2452.264036 2389.713925 2911.673477 3430.169216 2204.771163 2362.185543 0.881826474 0.877135434 0.805424741 0.884984916 1.038133538 1.011653777 1.232618448 1.452116759 0.933360705 1 11.20590657 -4.417889391 1.15070343 0.924989569 1.623963556 0.898592904 0.059004781 0.341211008 0.441569112 0.011003987 0.266516942 3.82E-05 4.417889391 0.698973987 KPPNLEGIVFPGESGLAPGS(ph)YK ddPTM_HeLa_CUDC101_4h_R1 1 KPPNLEGIVFPGESGLAPGSYK 22 1 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 0 KPPNLEGIVFPGES(0.011)GLAPGS(0.989)YK 108.19 1.13E-05 12998000 3770.7 2310.8 3039 2929.5 3391.1 2556.1 3563.1 4090.3 2881.6 3320 TRUE FALSE FALSE 3328.704262 2381.993009 3203.297532 3048.977672 3140.945309 2507.346651 3700.529961 4555.923218 2762.819228 3300.252492 1.008621089 0.721760839 0.970621957 0.923861941 0.951728789 0.759743885 1.121286922 1.380477169 0.837153895 1 11.68836069 -4.416682023 3.657114435 0.958467551 1.373632778 0.626989468 0.109193943 0.127815856 2.814079638 0.014841156 0.107495312 3.83E-05 4.416682023 0.415165227 NYSS(ph)PPPCHLSR ddPTM_HeLa_CUDC101_4h_R1 1 NYSSPPPCHLSR 12 0 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 NYS(0.193)S(0.807)PPPCHLSR 88.706 0.014871 14873000 2179.2 2052.8 1920.6 2117.3 1958.1 2141.3 2078.8 2115 2234.3 2104.1 TRUE FALSE FALSE 1923.757479 2116.044335 2024.433445 2203.652646 1813.654864 2100.45827 2158.980012 2355.763051 2142.201208 2091.58472 0.919760726 1.011694298 0.967894547 1.053580391 0.867119963 1.004242501 1.032222119 1.126305346 1.024200066 1 11.03038072 -4.415052444 1.81260998 0.966803309 1.14932303 0.409950178 0.051941644 0.403850821 1.684641143 0.007139002 0.112512989 3.85E-05 4.415052444 0.182519721 AEDGATPS(ph)PSNETPKKK ddPTM_HeLa_CUDC101_4h_R1 1 AEDGATPSPSNETPKKK 17 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGAT(0.005)PS(0.725)PS(0.112)NET(0.159)PKKK 73.918 0.0084383 55924000 3572.4 3094.9 3611.8 3741.3 4118.3 3538.8 4771.3 5850.6 3726.6 4861.2 TRUE FALSE FALSE 3153.648687 3190.250201 3807.064833 3893.886385 3814.501214 3471.303286 4955.330639 6516.608655 3572.987971 4832.285366 0.65262054 0.66019491 0.787839406 0.805806381 0.789378301 0.718356434 1.025463164 1.348556255 0.739399208 1 12.23848994 -4.414818269 2.756837388 0.805195938 1.37242649 0.763511745 0.099163425 0.178241739 2.154068586 0.019917177 0.190879592 3.85E-05 4.414818269 0.567230552 VEEESTGDPFGFDSDDES(ph)LPVSSK ddPTM_HeLa_CUDC101_4h_R1 1 VEEESTGDPFGFDSDDESLPVSSK 24 0 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 1 0 VEEESTGDPFGFDS(0.085)DDES(0.912)LPVS(0.002)SK 119.27 1.30E-08 6914800 5323.3 4340.4 3977.5 3986.7 4813 4740.9 4493.8 4380 4774.4 4595.2 TRUE FALSE FALSE 4699.310844 4474.122579 4192.535681 4149.294858 4457.954579 4650.475231 4667.127371 4878.601495 4577.597211 4567.867546 1.028775637 0.979477302 0.917832148 0.908365844 0.975937795 1.018084519 1.021730014 1.068026042 1.002130023 1 12.1573051 -4.414405171 1.701004058 0.994223084 1.078929952 0.291508098 0.039276518 0.944323146 3.33274531 0.006915388 0.117407739 3.85E-05 4.414405171 0.084706868 SDGSDTTEQESTNLPS(ph)PNK ddPTM_HeLa_CUDC101_4h_R1 2 SDGSDTTEQESTNLPSPNK 19 0 Q68DQ2 Q68DQ2 CRYBG3 Very large A-kinase anchor protein 1 0 SDGSDTTEQES(0.001)T(0.02)NLPS(0.979)PNK;SDGSDTTEQES(0.052)T(0.03)NLPS(0.917)PNK ; 116.61 0.00011317 13549800 6641.8 6060.1 5929.3 5654.3 6621.7 6767.2 6439.4 6545.4 7222.3 6786.7 TRUE FALSE FALSE 5863.258272 6246.804498 6249.855893 5884.906794 6133.230383 6638.126935 6687.769815 7290.501879 6924.593737 6746.332407 0.86910308 0.925955634 0.926407938 0.872312012 0.909120692 0.983960845 0.991319344 1.080661527 1.026423443 1 12.71988769 -4.413610514 1.35383397 0.929041071 1.11419801 0.458040064 0.048236414 0.725497267 1.413836753 0.007883008 0.169216991 3.86E-05 4.413610514 0.185156938 SATDGNTSTTPPTSAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 SATDGNTSTTPPTSAKK 17 1 A0A669KAX4;Q13620-1;Q13620;A0A669KAU9;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 0 1 SATDGNTSTTPPTSAK(1)K 149.3 0.0015537 1486000 176.32 167.11 224.37 237.15 264.94 191.73 304.08 246.14 0 60.786 FALSE TRUE FALSE 155.6520369 172.258461 236.5001209 246.822002 245.395904 188.0730697 315.8084675 274.1595827 0 60.42444217 2.575978053 2.850807634 3.913981038 4.084803983 4.06120264 3.112532991 5.226501994 4.53722985 0 1 5.917060344 -7.456087018 0.254015357 0.360267616 5.195388889 0.851944037 0.589701908 0.453412369 0.111637129 0.830794362 0.786798846 3.50E-08 7.456087018 4.835121273 AAVLSDS(ph)EDEEKASAK ddPTM_HeLa_CUDC101_4h_R1 2 AAVLSDSEDEEKASAK 16 1 Q96ST2-3;Q96ST2;Q96ST2-2 Q96ST2-3 IWS1 Protein IWS1 homolog 1 0 AAVLS(0.051)DS(0.949)EDEEKASAK;AAVLS(0.138)DS(0.862)EDEEKASAK ; 104.16 0.0016295 101609000 4128.9 3796.5 3948.6 3481.8 4112.5 4127 5103.7 6089.5 3979.2 3652.4 TRUE FALSE FALSE 3644.916601 3913.465665 4162.07326 3623.802854 3809.129068 4048.284351 5300.551419 6782.704065 3815.175692 3630.675362 1.003922476 1.077889173 1.146363374 0.998107099 1.049151656 1.115022399 1.459935381 1.868165944 1.050817082 1 11.82602222 -4.411708438 1.453773739 1.019179942 2.075910627 0.967142493 0.047887287 0.108703467 0.253933996 0.007535494 0.152205852 3.88E-05 4.411708438 1.056730685 GGTPAFLPSS(ph)LSPQSSLPASR ddPTM_HeLa_CUDC101_4h_R1 1 GGTPAFLPSSLSPQSSLPASR 21 0 E5RGS7;B3KPU0;H0YBP7;A0A087WVI1;Q96JY6;Q96JY6-3;Q96JY6-5 E5RGS7;Q96JY6 PDLIM2 PDZ and LIM domain protein 2 1 0 GGT(0.007)PAFLPS(0.104)S(0.669)LS(0.22)PQS(0.001)S(0.001)LPASR 138.82 6.63E-07 30818000 2268.9 2349.2 2136.7 1783 2617 2137.2 1752.7 1219 2429 2288.9 TRUE FALSE FALSE 2002.942981 2421.576068 2252.216465 1855.718447 2423.949124 2096.436471 1820.302226 1357.766033 2328.875592 2275.285521 0.880304016 1.064295468 0.989861028 0.815598056 1.065338438 0.921394898 0.80003244 0.59674534 1.023553119 1 11.15183188 -4.411481901 1.954700898 0.953464021 0.548566262 0.701919781 0.076265131 0.243588223 1.231631143 0.010810351 0.157878843 3.88E-05 4.411481901 -0.404897759 HDS(ph)PDPS(ph)PPRR ddPTM_HeLa_CUDC101_4h_R1 1 HDSPDPSPPRR 11 1 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 2 0 HDS(1)PDPS(1)PPRR 66.784 0.035589 12434000 5373.3 6844.7 7091.6 7902 6849.4 6761.7 6104.4 5423.7 7572.5 7651.9 TRUE FALSE FALSE 4743.449919 7055.577094 7474.993347 8224.277715 6344.133408 6632.731838 6339.848753 6041.112085 7260.358345 7606.386158 0.623614134 0.927585971 0.982725987 1.081233262 0.834053554 0.87199515 0.833490257 0.794215802 0.954508251 1 12.89299547 -4.409532594 2.781450209 0.859685267 0.791215259 0 0.124139691 1.709009299 20.96031117 0.023124968 0.222874181 3.89E-05 4.409532594 -0.068470008 DNPS(ph)PGPSR ddPTM_HeLa_CUDC101_4h_R1 2 DNPSPGPSR 9 0 Q9NQS1 Q9NQS1 AVEN Cell death regulator Aven 1 0 DNPS(0.895)PGPS(0.105)R;DNPS(0.988)PGPS(0.012)R ; 115.92 0.0072874 21459000 8578.7 4320.1 8993.7 10522 6635.2 6234.2 5545.5 1864.98 8966.2 10171.2 TRUE FALSE FALSE 7573.11779 4453.19716 9479.926626 10951.13264 6145.734515 6115.293022 5759.391793 2077.281785 8596.609441 10110.70125 0.749020034 0.440443946 0.937613168 1.083122957 0.607844537 0.604833717 0.569633268 0.205453779 0.850248586 1 13.30359544 -4.409374608 0.763938528 0.859485616 1.78E-20 0.517021931 0.179144773 1.422464192 0.670010391 0.032574694 0.994261205 3.90E-05 4.409374608 -0.859485616 LNGDTEEGFNRLS(ph)DEFSK ddPTM_HeLa_CUDC101_4h_R1 2 LNGDTEEGFNRLSDEFSK 18 1 A0A087WVC1;Q9BQ39 A0A087WVC1 DDX50 ATP-dependent RNA helicase DDX50 1 0 LNGDT(0.003)EEGFNRLS(0.992)DEFS(0.006)K;LNGDT(0.007)EEGFNRLS(0.988)DEFS(0.005)K ; 61.537 0.021514 62203000 3836.2 3169.9 3072.5 2925 3310.6 2876 2249.81 1690.67 3828.6 3117.6 TRUE FALSE FALSE 3386.526451 3267.560862 3238.608644 3044.294143 3066.383634 2821.145092 2336.585925 1883.129039 3670.783488 3099.056377 1.092760518 1.054372836 1.045030567 0.982329385 0.989457196 0.910323902 0.753966899 0.607645944 1.184484256 1 11.59761328 -4.409011808 0.856878701 1.044945527 0.409403194 0.898862731 0.050898295 0.307298302 0.190118848 0.005935902 0.174339399 3.90E-05 4.409011808 -0.635542332 TVT(ph)PASS(ph)AKTS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 1 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 3 0 T(0.426)VT(0.574)PAS(0.23)S(0.767)AKT(0.289)S(0.714)PAK 95.751 0.014472 19979000 4632 3358 3997.3 3340.8 3409.1 3901.9 4451 5294.9 3288.2 3443.5 TRUE FALSE FALSE 4089.043982 3461.456 4213.406129 3477.052264 3157.617485 3827.477759 4622.676561 5897.650013 3152.659004 3423.017909 1.194572769 1.011229299 1.23090391 1.015785589 0.922465955 1.118158847 1.35046812 1.722938696 0.921017385 1 11.74105313 -4.408739869 2.068534292 1.080865207 1.80031561 0.809802549 0.101527311 0.166934932 0.974525936 0.014442872 0.198976674 3.90E-05 4.408739869 0.719450404 S(ph)PLGSVR ddPTM_HeLa_CUDC101_4h_R1 3 SPLGSVR 7 0 Q92620;J3KSA8;H3BMS7;Q92620-2 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 1 0 S(0.997)PLGS(0.003)VR;S(1)PLGSVR;S(1)PLGSVR ;; 114.89 0.012962 48609600 6591.72 5526.07 6546.45 5944.06 6813.53 6458.42 6584.51 6721.35 7109.16 6979.16 TRUE FALSE FALSE 5819.048574 5696.321667 6900.370889 6186.484459 6310.909466 6335.236399 6838.476756 7486.481315 6816.117416 6937.647646 0.838763926 0.821073937 0.994626888 0.89172653 0.909661284 0.913167794 0.985705401 1.079109476 0.982482502 1 12.76023085 -4.408623916 2.157560815 0.915979494 1.097456615 0.425027606 0.057830428 0.422987753 2.753980911 0.009939727 0.130163213 3.90E-05 4.408623916 0.181477121 SSPGSVAASPS(ph)GGGGR ddPTM_HeLa_CUDC101_4h_R1 1 SSPGSVAASPSGGGGR 16 0 Q9BXB5-2;Q9BXB5 Q9BXB5-2 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 SSPGS(0.003)VAAS(0.302)PS(0.694)GGGGR 83.081 0.013314 21752000 1572.4 1150.8 1102.8 976.63 1125.8 991.02 1175.2 1226.7 994.38 957.24 TRUE FALSE FALSE 1388.085656 1186.254784 1162.420704 1016.461193 1042.751977 972.1179447 1220.527858 1366.34257 953.3912355 951.5462939 1.45876839 1.246660085 1.22161235 1.068220432 1.095849969 1.02161918 1.282678379 1.435918124 1.001938888 1 9.894130037 -4.407732221 4.043575479 1.192732149 1.428867041 0.241957831 0.142686545 0.357048628 9.19473136 0.025550361 0.174040514 3.91E-05 4.407732221 0.236134893 ELEKPIQSKPQS(ph)PVIQAAAVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 ELEKPIQSKPQSPVIQAAAVSPK 23 2 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 2 0 ELEKPIQS(0.008)KPQS(0.993)PVIQAAAVS(1)PK;ELEKPIQS(0.009)KPQS(0.991)PVIQAAAVS(1)PK;ELEKPIQS(0.001)KPQS(0.999)PVIQAAAVS(1)PK ;; 89.299 0.00013417 158100000 9944.9 7429.6 8075 8057.9 9353.8 9180.3 7825.4 6683.3 8322.4 8488.7 TRUE FALSE FALSE 8779.173897 7658.49717 8511.558926 8386.535991 8663.788809 9005.201073 8127.228299 7444.099857 7979.347149 8438.208835 1.040407279 0.907597491 1.008692614 0.993876326 1.026733159 1.067193435 0.963146144 0.882189574 0.945620961 1 13.04272108 -4.407053241 3.519151299 1.012191975 0.88258599 0.348336819 0.04494672 0.161586723 3.262123677 0.00559849 0.042639233 3.92E-05 4.407053241 -0.129605985 PIPNQPPTAAHTANFLLNASGSTST(ph)PAPSR ddPTM_HeLa_CUDC101_4h_R1 1 PIPNQPPTAAHTANFLLNASGSTSTPAPSR 30 0 P53396;P53396-2;P53396-3;K7EIE7 P53396 ACLY ATP-citrate synthase 1 0 PIPNQPPTAAHTANFLLNAS(0.034)GS(0.136)T(0.136)S(0.136)T(0.549)PAPS(0.007)R 128.86 7.03E-16 0 2048.4 1508.9 1594.3 1424 1819.7 1375.9 2084.8 2559.9 1190.7 1880.2 TRUE FALSE FALSE 1808.289657 1555.387421 1680.49268 1482.076875 1685.464356 1349.657 2165.211434 2851.308669 1141.618842 1869.016487 0.967508671 0.832195666 0.89913208 0.792971536 0.901792129 0.722121506 1.15847637 1.525566355 0.610812612 1 10.86806358 -4.406836216 3.359715767 0.933533787 1.529221797 0.672322137 0.138709264 0.09757802 1.800099282 0.014753707 0.1173462 3.92E-05 4.406836216 0.595688009 EATAQKPTGSVGSTVTT(ph)PPPLVR ddPTM_HeLa_CUDC101_4h_R1 1 EATAQKPTGSVGSTVTTPPPLVR 23 1 Q86YP4-2;Q86YP4;Q86YP4-3 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 EATAQKPTGSVGSTVT(0.161)T(0.839)PPPLVR 99.313 0.00010564 36652000 1790.1 1471 1504.3 1504.5 1542.4 1268.6 1127.3 625.01 2047.5 1830.8 TRUE FALSE FALSE 1580.267192 1516.319766 1585.627008 1565.860013 1428.620225 1244.403569 1170.780339 696.158612 1963.101183 1819.91032 0.868321463 0.833183784 0.871266562 0.860405041 0.784994848 0.683771917 0.6433176 0.382523581 1.078680175 1 10.82965165 -4.027891735 0.415632414 0.94714011 1.52E-29 0.885629831 0.062790349 1.338833881 0.136193105 0.014227497 0.652809423 9.38E-05 4.027891735 -0.94714011 down TASTPT(ph)PPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_HeLa_CUDC101_4h_R1 1 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9J6B6;C9JSU8;C9J556;C9K073;C9J2Z7;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 T(0.008)AS(0.061)T(0.181)PT(0.682)PPQT(0.066)GGGLEPQANGET(0.002)PQVAVIVRPDDR 61.436 0.00067399 109440000 717.29 563.03 566.44 517.04 618.99 591.31 465.09 258.33 682.9 583.54 TRUE FALSE FALSE 633.2103535 580.3762869 597.0634598 538.127126 573.3283409 580.0317469 483.0286771 287.737243 654.750573 580.0690781 1.091611978 1.000529607 1.029297169 0.927694901 0.988379423 0.999935644 0.832708888 0.496039616 1.128745864 1 9.180080905 -4.026323557 1.198174566 1.030478181 4.35E-13 0.906450545 0.051873833 0.488215762 0.401399629 0.007558526 0.712468009 9.41E-05 4.026323557 -1.030478181 down LLASQGSQGAPLLST(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 LLASQGSQGAPLLSTPK 17 0 H3BRB3;Q14807-2;Q14807 H3BRB3 KIF22 Kinesin-like protein;Kinesin-like protein KIF22 1 0 LLASQGSQGAPLLS(0.284)T(0.716)PK 90.561 0.032477 21766000 3527.3 3054.6 2834.7 2704.1 3350.3 2763.8 2725.4 1247.9 3414.9 3310.6 TRUE FALSE FALSE 3113.835241 3148.708605 2987.952456 2814.384886 3103.155044 2711.08512 2830.519591 1389.955892 3274.136377 3290.908404 0.946193227 0.956790107 0.907941544 0.855200006 0.942947862 0.823810567 0.860102818 0.422362376 0.994903527 1 11.68427016 -4.02621678 1.237595804 0.955282981 2.91E-37 0.880116557 0.055335819 0.585150537 0.51433896 0.008548125 0.816059919 9.41E-05 4.02621678 -0.955282981 down SAVENCQDSWR ddPTM_HeLa_CUDC101_4h_R1 3 SAVENCQDSWR 11 0 P52209-2;P52209 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 0 ;; ;; 218.11 2.44E-24 44711700 3672.88 3123.9 3093.94 3006.02 3430.2 2961.11 2911.41 2645.82 3124.25 1733.15 FALSE FALSE TRUE 3242.350574 3220.143656 3261.207755 3128.618489 3177.16098 2904.63176 3023.704059 2947.009454 2995.467093 1722.841147 1.881978835 1.869089128 1.892924232 1.815964574 1.844140411 1.685954486 1.755068402 1.710552049 1.738678635 1 10.75057397 -9.206294116 0.823036305 0.970044652 1.811537231 0.117451784 0.234711877 0.128601103 0.148382598 0.06924627 0.016977253 6.22E-10 9.206294116 0.841492579 S(ph)PHQLLS(ph)PSSFS(ph)PSATPSQK ddPTM_HeLa_CUDC101_4h_R1 1 SPHQLLSPSSFSPSATPSQK 20 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 3 0 S(0.997)PHQLLS(0.859)PS(0.122)S(0.089)FS(0.463)PS(0.364)AT(0.097)PS(0.01)QK 66.014 0.011289 15586000 1865.8 1369.3 1286.3 1197.6 1786.9 1373.9 998.6 499.48 2117.7 1438.9 TRUE FALSE FALSE 1647.093752 1411.48651 1355.841269 1246.443304 1655.083947 1347.695147 1037.116337 556.3387842 2030.40751 1430.341359 1.151538926 0.986817938 0.947914468 0.871430653 1.157125141 0.942219239 0.725083093 0.388955252 1.419526533 1 10.48214378 -4.40667088 1.493153244 1.048220428 0.235203975 0.68942868 0.145174152 0.259696808 0.645679562 0.014282819 0.285713785 3.92E-05 4.40667088 -0.813016453 SPSLSPSPPS(ph)PLEK ddPTM_HeLa_CUDC101_4h_R1 3 SPSLSPSPPSPLEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SPSLSPS(0.029)PPS(0.971)PLEK;SPSLSPS(0.004)PPS(0.995)PLEK;SPSLS(0.002)PS(0.112)PPS(0.887)PLEK ;; 172.57 3.86E-07 327479000 7506 6490.9 6489.4 6764.3 7087.4 7078.4 7953.9 8917.8 6929.8 7996.6 TRUE FALSE FALSE 6626.158058 6690.876935 6840.236593 7040.177392 6564.576622 6943.391313 8260.684587 9932.966305 6644.150711 7949.035868 0.833580093 0.84172182 0.860511477 0.885664313 0.825833061 0.873488487 1.039205852 1.249581266 0.835843594 1 12.95656417 -4.406617921 2.496226724 0.897989141 1.275147411 0.818615633 0.054782117 0.168409711 1.584311012 0.010505937 0.116022502 3.92E-05 4.406617921 0.377158269 GPGQPSS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 2 GPGQPSSPQR 10 0 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 0 GPGQPS(0.004)S(0.996)PQR;GPGQPS(0.003)S(0.997)PQR ; 107.11 0.0094681 87204000 16043.9 10155.7 12119.2 12043.7 10585.5 10806.6 9905.6 6748.7 11081.3 12936.4 TRUE FALSE FALSE 14163.25836 10468.58508 12774.40061 12534.89414 9804.628754 10600.48211 10287.66231 7516.944729 10624.52412 12859.45372 1.101388805 0.814076967 0.993385947 0.974761014 0.762445199 0.824333781 0.800007725 0.584546194 0.82620338 1 13.65054174 -4.406531203 0.399134133 1.047397463 0.366149939 0.434878723 0.106760026 1.974751886 0.231534204 0.024442871 0.627782978 3.92E-05 4.406531203 -0.681247525 NVHS(ph)EDFENR ddPTM_HeLa_CUDC101_4h_R1 2 NVHSEDFENR 10 0 Q9H2P0;A0A669KBJ7 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 NVHS(1)EDFENR;NVHS(1)EDFENR ; 126.5 0.0020821 132760000 10052.7 9067.8 8101 8451.2 9227.2 8571.9 7359.5 6419.2 8732.3 8930 TRUE FALSE FALSE 8874.337745 9347.16817 8538.964564 8795.876465 8546.527839 8408.405289 7643.35838 7149.935781 8372.350898 8876.883963 0.999713163 1.052978524 0.961932656 0.990874332 0.962784675 0.947224874 0.8610407 0.805455587 0.943163269 1 13.11583762 -4.405385285 0.818034853 1.002118957 0.708516934 0.827469031 0.028278775 0.384041141 0.211898341 0.003220121 0.097078669 3.93E-05 4.405385285 -0.293602023 AVSDWIDEQEKGSSEQAES(ph)DNMDVPPEDDSKEGAGEQK ddPTM_HeLa_CUDC101_4h_R1 2 AVSDWIDEQEKGSSEQAESDNMDVPPEDDSKEGAGEQK 38 2 Q12906-7;Q12906-4;Q12906-6;Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7ER69;K7EM82;K7EJ09 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 AVSDWIDEQEKGS(0.037)S(0.168)EQAES(0.795)DNMDVPPEDDSKEGAGEQK;AVSDWIDEQEKGS(0.045)S(0.045)EQAES(0.91)DNMDVPPEDDSKEGAGEQK ; 106.61 9.10E-21 33663000 6741.1 6142.7 5791.6 5471.9 5937 6896.3 6596.7 7248.1 5825 5959.7 TRUE FALSE FALSE 5950.918477 6331.949306 6104.711415 5695.067734 5499.039338 6764.764568 6851.136929 8073.194406 5584.891035 5924.251439 1.004501335 1.068818461 1.030461228 0.961314318 0.928225177 1.14187668 1.156456136 1.362736624 0.942716745 1 12.53241716 -4.405279909 1.267704861 1.003153674 1.454425644 0.836283397 0.05056046 0.292289147 0.476217981 0.006825508 0.1591845 3.93E-05 4.405279909 0.45127197 AS(ph)LGSLEGEAEAEASSPK ddPTM_HeLa_CUDC101_4h_R1 1 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 AS(0.933)LGS(0.067)LEGEAEAEASSPK 169.43 2.08E-07 39345000 7106.4 6579.1 5571.2 5942.2 6437.9 6691.4 6547.5 6753.1 6412 5982.5 TRUE FALSE FALSE 6273.398565 6781.794273 5872.395924 6184.5486 5962.988943 6563.772694 6800.039268 7521.845607 6147.694646 5946.915824 1.054899506 1.140388476 0.987469152 1.039958994 1.002702766 1.10372719 1.143456452 1.264831356 1.03376184 1 12.53792594 -4.403123327 1.240692826 1.031998789 1.330833563 0.735776773 0.042270431 0.444212597 0.683280087 0.006608325 0.15787402 3.95E-05 4.403123327 0.298834774 AGS(ph)ST(ph)PGDAPPAVAEVQGR ddPTM_HeLa_CUDC101_4h_R1 1 AGSSTPGDAPPAVAEVQGR 19 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 2 0 AGS(0.709)S(0.297)T(0.994)PGDAPPAVAEVQGR 183.73 9.65E-11 12776000 2540 2116 1893.5 1805.7 2210.5 2165.2 2292.1 2486.1 2073.8 1958.9 TRUE FALSE FALSE 2242.26505 2181.191452 1995.868338 1879.344251 2047.435819 2123.902417 2380.507065 2769.107575 1988.317086 1947.248376 1.151504389 1.120140337 1.024968547 0.965128165 1.051450778 1.09071983 1.222497908 1.422061823 1.021090638 1 10.9272212 -4.402464809 1.81581127 1.063787432 1.482338149 0.826463295 0.053314412 0.253893452 1.045168866 0.009962855 0.163766707 3.96E-05 4.402464809 0.418550717 VNS(ph)GDTEVGSSLLR ddPTM_HeLa_CUDC101_4h_R1 3 VNSGDTEVGSSLLR 14 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 VNS(0.96)GDT(0.04)EVGSSLLR;VNS(0.838)GDT(0.162)EVGSSLLR;VNS(0.843)GDT(0.136)EVGS(0.018)S(0.003)LLR ;; 154.47 0.00011161 112144200 4696.9 3867.81 3363.56 3818.22 4638 3639.08 3109.35 2260.99 3757.1 3072.76 TRUE FALSE FALSE 4146.336502 3986.972642 3545.404228 3973.943515 4295.86398 3569.670612 3229.278671 2518.371962 3602.230748 3054.483087 1.35745931 1.305285552 1.160721512 1.301019977 1.406412757 1.168666026 1.057225913 0.824483846 1.179325812 1 11.57671254 -4.401810995 2.15374593 1.207880514 0.782278813 0.556920431 0.112827319 0.413350295 2.654251297 0.022293919 0.299677619 3.96E-05 4.401810995 -0.425601701 STNT(ph)SQTGLVGTK ddPTM_HeLa_CUDC101_4h_R1 1 STNTSQTGLVGTK 13 0 Q96R06 Q96R06 SPAG5 Sperm-associated antigen 5 1 0 S(0.016)T(0.003)NT(0.847)S(0.134)QT(0.001)GLVGTK 107.73 0.0016983 0 2428.7 2515.8 2133.3 2150.6 2757.5 2135.2 1816.9 1217.6 2384.9 2357 TRUE FALSE FALSE 2144.011468 2593.308816 2248.632651 2238.310764 2554.084719 2094.474617 1886.978442 1356.206662 2286.593413 2342.980459 0.915078681 1.106841846 0.959731714 0.955326262 1.090100734 0.893936016 0.805375237 0.57883823 0.975933625 1 11.19412921 -4.401441108 1.630533968 0.977288727 0.50131753 0.815665503 0.061588388 0.252928185 0.784747955 0.009321394 0.173319469 3.97E-05 4.401441108 -0.475971197 DYS(ph)PSRNPPEVEAR ddPTM_HeLa_CUDC101_4h_R1 1 DYSPSRNPPEVEAR 14 1 A0A3B3IRR3;Q9HCM7 A0A3B3IRR3 FBRSL1 Fibrosin-1-like protein 1 0 DY(0.042)S(0.778)PS(0.18)RNPPEVEAR 61.127 0.039629 40045000 1780.5 1543.5 1416.1 1497.7 1846.6 1593 1647.9 1672.4 1720.4 1663.2 TRUE FALSE FALSE 1571.792489 1591.053406 1492.658649 1558.78268 1710.379997 1562.616179 1711.460055 1862.779256 1649.484384 1653.307212 0.950695961 0.962345893 0.902831995 0.942827 1.034520375 0.945145686 1.035173646 1.126698802 0.997687769 1 10.69113911 -4.401425821 2.438297131 0.969865158 1.140454547 0.663120815 0.035311331 0.193220952 1.703170656 0.005176685 0.059849827 3.97E-05 4.401425821 0.170589389 RLS(ph)PPSSSAASSYSFSDLNSTR ddPTM_HeLa_CUDC101_4h_R1 1 RLSPPSSSAASSYSFSDLNSTR 22 1 P50402 P50402 EMD Emerin 1 0 RLS(0.891)PPS(0.017)S(0.064)S(0.027)AAS(0.001)SYSFSDLNSTR 59.094 0.0083025 24444000 1139 880.28 868.46 817.3 848.58 706.3 630.56 455.08 984 1057.4 TRUE FALSE FALSE 1005.488147 907.4003834 915.4115745 850.6330267 785.981944 692.8285043 654.8809104 506.8844677 943.4391035 1051.110538 0.95659601 0.863277791 0.870899436 0.809270763 0.747763357 0.659139529 0.623037147 0.482237072 0.897564119 1 10.03769868 -4.024025734 0.306343275 1.010085992 2.83E-19 0.941195308 0.037347924 0.599539592 0.036615103 0.007945558 0.232033873 9.46E-05 4.024025734 -1.010085992 down NLS(ph)NEELTK ddPTM_HeLa_CUDC101_4h_R1 3 NLSNEELTK 9 0 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 NLS(1)NEELTK;NLS(0.999)NEELT(0.001)K;NLS(0.958)NEELT(0.042)K ;; 145.23 0.0012194 391066000 9639.5 9056.1 7136.1 7791.9 8847 8677.9 8750.9 8987.9 8491.8 8463.3 TRUE FALSE FALSE 8509.572423 9335.107707 7521.899152 8109.687361 8194.374436 8512.383516 9088.425144 10011.04621 8141.76441 8412.959915 1.011483771 1.109610387 0.894084749 0.963951742 0.974018005 1.01181791 1.080288654 1.189955296 0.967764555 1 13.03839776 -4.401099765 1.963084035 0.999739498 1.217218991 0.592822111 0.051416797 0.301042219 1.51690355 0.007022844 0.105866141 3.97E-05 4.401099765 0.217479494 TREEEEDSTIEASDQVS(ph)DDTVEMPLPK ddPTM_HeLa_CUDC101_4h_R1 1 TREEEEDSTIEASDQVSDDTVEMPLPK 27 1 P12270 P12270 TPR Nucleoprotein TPR 1 0 TREEEEDSTIEASDQVS(0.968)DDT(0.032)VEMPLPK 135.55 1.37E-11 12987000 2091.8 1747.4 1713.8 1717.1 1781.9 1620.6 1939 2100.9 2245 1906.9 TRUE FALSE FALSE 1846.602375 1801.235323 1806.453212 1787.13076 1650.452787 1589.689755 2013.78788 2340.057964 2152.46015 1895.557674 0.974173669 0.950240316 0.952993009 0.942799464 0.870695105 0.838639614 1.062372254 1.234495788 1.135528704 1 10.88840664 -4.399786036 3.58249661 0.962493951 1.233967339 0.554565525 0.075651085 0.113250341 2.343775188 0.008337211 0.063352174 3.98E-05 4.399786036 0.271473389 EAKPGAAEPEVGVPS(ph)SLSPSSPSSSWTETDVEER ddPTM_HeLa_CUDC101_4h_R1 1 EAKPGAAEPEVGVPSSLSPSSPSSSWTETDVEER 34 1 F6T1Q0;Q6L8Q7-2;Q6L8Q7 F6T1Q0 PDE12 "2,5-phosphodiesterase 12" 1 0 EAKPGAAEPEVGVPS(0.221)S(0.221)LS(0.221)PS(0.164)S(0.164)PS(0.009)S(0.001)SWTETDVEER 100.55 8.97E-13 5709900 5760.9 4412.2 4027.2 4521 5497.7 5118.2 4243.2 3270.1 4601.8 4967.3 TRUE FALSE FALSE 5085.616035 4548.134652 4244.922614 4705.385921 5092.145624 5020.578863 4406.861645 3642.354966 4412.111856 4937.754279 1.029945143 0.92109376 0.859686889 0.952940478 1.031267523 1.016773735 0.892482978 0.737654156 0.893546258 1 12.26963933 -4.399620064 2.519746428 0.993643952 0.7181617 0.501367965 0.062297061 0.189620188 1.810386532 0.008633309 0.096477535 3.98E-05 4.399620064 -0.275482252 S(ph)IEVENDFLPVEK ddPTM_HeLa_CUDC101_4h_R1 3 SIEVENDFLPVEK 13 0 Q5JPT2;Q96B97-2;Q96B97;Q5JPT1;Q5VSN0 Q5JPT2 SH3KBP1 SH3 domain-containing kinase-binding protein 1 1 0 S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK;S(1)IEVENDFLPVEK ;; 218.12 2.16E-25 149812000 15110.3 14165.1 13416.81 13551.86 15958.8 13079 10871.7 7422.4 13611.1 12902.59 TRUE FALSE FALSE 13339.09354 14601.50994 14142.16333 14104.56343 14781.55112 12829.53987 11291.02511 8267.336014 13050.0447 12825.84482 1.040016757 1.138444301 1.10263016 1.099698587 1.152481675 1.000288094 0.880333831 0.644584129 1.01748032 1 13.64676624 -4.399438209 1.883054202 1.049196279 0.58222909 0.859894004 0.053574446 0.200627347 0.904452368 0.009287504 0.147942918 3.99E-05 4.399438209 -0.466967189 AADS(ph)DDGAVSAPAASDGGVSK ddPTM_HeLa_CUDC101_4h_R1 3 AADSDDGAVSAPAASDGGVSK 21 0 Q96GM8 Q96GM8 TOE1 Target of EGR1 protein 1 1 0 AADS(1)DDGAVSAPAASDGGVSK;AADS(1)DDGAVSAPAASDGGVSK;AADS(1)DDGAVSAPAASDGGVSK ;; 288.96 2.37E-106 63241800 6514.2 5344.4 5340.7 5543 6017 6063.5 5849.7 5748.6 6204.4 6209.9 TRUE FALSE FALSE 5750.615351 5509.054629 5629.434397 5769.067499 5573.137898 5947.84884 6075.324889 6402.997387 5948.652006 6172.963239 0.931581014 0.892448961 0.911950093 0.934570202 0.902830242 0.963532198 0.984182904 1.037264785 0.963662309 1 12.59174748 -4.39931226 2.049749976 0.95039121 1.048029081 0.454684772 0.032329754 0.541977805 3.049397804 0.006099538 0.087858877 3.99E-05 4.39931226 0.09763787 SLGGIS(ph)PSEDR ddPTM_HeLa_CUDC101_4h_R1 1 SLGGISPSEDR 11 0 H3BMM1;H3BV44;H3BRD5;B2RTY4-5;B2RTY4-2;B2RTY4;B2RTY4-4 H3BMM1 MYO9A Unconventional myosin-IXa 1 0 S(0.004)LGGIS(0.983)PS(0.013)EDR 106.01 0.0081398 2861500 1640.9 1397.3 1219.4 1404.3 1509.5 1677.6 1252.9 929.77 1444 1489.5 TRUE FALSE FALSE 1448.556189 1440.349157 1285.324452 1461.573424 1398.147192 1645.602575 1301.224773 1035.611259 1384.477709 1480.640388 0.978330864 0.97278797 0.868086852 0.987122488 0.944285462 1.11141273 0.878825665 0.699434695 0.935053319 1 10.53200557 -4.398114112 3.52961912 0.983089017 0.698753209 0.661285112 0.05949846 0.099781286 2.005668491 0.007563495 0.058451308 4.00E-05 4.398114112 -0.284335807 GGITQPNINDS(ph)LEITK ddPTM_HeLa_CUDC101_4h_R1 2 GGITQPNINDSLEITK 16 0 I3L328;G5EA36;P30260;P30260-2 I3L328 CDC27 Cell division cycle protein 27 homolog 1 0 GGITQPNINDS(0.999)LEIT(0.001)K;GGITQPNINDS(0.985)LEIT(0.015)K ; 176.44 3.05E-07 16499800 4991.6 3601.7 3292 3896.1 4010.3 3568.8 2998.2 1384.62 4744.3 4762.7 TRUE FALSE FALSE 4406.492215 3712.664108 3469.975478 4054.999798 3714.468159 3500.731086 3113.841578 1542.239544 4548.737946 4734.371249 0.930744968 0.7841937 0.732932695 0.856502286 0.784574754 0.739428934 0.657709633 0.325753825 0.960790294 1 12.20895712 -4.021323217 0.313508514 0.9888546 1.95E-18 0.793526812 0.083140454 2.735046998 0.172962057 0.03480437 1.060000721 9.52E-05 4.021323217 -0.9888546 down TVSTS(ph)SQPEENVDR ddPTM_HeLa_CUDC101_4h_R1 1 TVSTSSQPEENVDR 14 0 P42684-2;P42684-6;P42684-3;P42684;P42684-4;P42684-7;P42684-10;P42684-5 P42684-2 ABL2 Abelson tyrosine-protein kinase 2 1 0 TVST(0.001)S(0.499)S(0.499)QPEENVDR 204.17 3.48E-17 11908000 1199.2 1044.6 1280.7 1098.5 1035.4 1194.4 1466.9 1860.1 1152.3 1181.8 TRUE FALSE FALSE 1058.631594 1076.782888 1349.938516 1143.301578 959.0206048 1171.61881 1523.478824 2071.846265 1104.801706 1174.770601 0.901138991 0.916589917 1.149108187 0.973212623 0.816347127 0.997317101 1.296830907 1.763617734 0.940440376 1 10.19816335 -4.397905438 1.986487504 0.956174304 1.879494041 0.904906137 0.081075844 0.121530315 0.62877883 0.012182204 0.183148312 4.00E-05 4.397905438 0.923319737 RQS(ph)SGSATNVASTPDNR ddPTM_HeLa_CUDC101_4h_R1 3 RQSSGSATNVASTPDNR 17 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 RQS(0.731)S(0.131)GS(0.131)AT(0.008)NVASTPDNR;RQS(0.974)S(0.026)GSATNVASTPDNR;RQS(0.707)S(0.128)GS(0.128)AT(0.036)NVASTPDNR ;; 199.91 2.61E-16 154986000 4944.63 4536.08 4856.31 4502.71 4850.72 4639.47 3360.11 2100.16 3948.38 3521.96 TRUE FALSE FALSE 4365.027967 4675.831248 5118.856808 4686.349976 4492.89205 4550.97984 3489.710568 2339.233725 3785.626105 3501.011225 1.246790623 1.335565911 1.462108082 1.338570394 1.283312666 1.299904384 0.996772173 0.668159447 1.081295049 1 11.77355597 -4.397695904 2.914956206 1.196412307 0.645931126 0.62407794 0.136462871 0.216863084 2.926145712 0.024769316 0.234250736 4.00E-05 4.397695904 -0.550481181 S(ph)FEVEEVETPNSTPPR ddPTM_HeLa_CUDC101_4h_R1 3 SFEVEEVETPNSTPPR 16 0 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR;S(1)FEVEEVETPNSTPPR ;; 270.79 1.10E-85 116395000 2606.71 2118.9 2000.01 2125.68 2371.98 2322.55 2468.47 2665.39 2213.41 2374.51 TRUE FALSE FALSE 2301.155405 2184.180797 2108.13659 2212.374418 2197.003761 2278.251228 2563.679715 2968.807224 2122.172303 2360.386309 0.974906267 0.925348867 0.893132019 0.937293362 0.930781437 0.965202696 1.086127175 1.257763279 0.899078382 1 11.20480728 -4.397559956 2.19706918 0.967472341 1.291030117 0.856326995 0.039736727 0.14418426 0.969191837 0.006053152 0.080616139 4.00E-05 4.397559956 0.323557777 RADLNQGIGEPQS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 2 RADLNQGIGEPQSPSR 16 1 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 RADLNQGIGEPQS(0.618)PS(0.382)R;RADLNQGIGEPQS(0.993)PS(0.007)R ; 154.31 0.00022832 57791000 5591.8 4050.8 4504.6 4258.8 4647.7 4242 3692.9 3279.6 4561.7 4851.5 TRUE FALSE FALSE 4936.337681 4175.600347 4748.132302 4432.492272 4304.848431 4161.090918 3835.33639 3652.936407 4373.664795 4822.643062 1.023575168 0.865832344 0.984549808 0.919100214 0.892632603 0.862823739 0.795276851 0.757455271 0.906902033 1 12.23560832 -4.397186385 0.361470821 1.016043519 0.57016377 0.620478677 0.05031876 1.555459962 0.151042861 0.012619528 0.296786604 4.01E-05 4.397186385 -0.445879749 RAS(ph)PPDPSPSPSAASASER ddPTM_HeLa_CUDC101_4h_R1 2 RASPPDPSPSPSAASASER 19 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 RAS(1)PPDPSPSPSAASASER;RAS(1)PPDPSPSPSAASASER ; 118.15 3.48E-05 142724000 5252.1 5095.6 5018.1 5589.1 5623.6 4883.8 4148 3063.1 4605.1 4846 TRUE FALSE FALSE 4636.4568 5252.589396 5289.393665 5817.047656 5208.758232 4790.649652 4307.989749 3411.790923 4415.275829 4817.175776 0.962484455 1.090387738 1.098027955 1.207563918 1.081288804 0.994493428 0.89429781 0.708255434 0.916569383 1 12.23397185 -4.396560412 1.99075861 1.022302488 0.664292533 0.62870367 0.079900109 0.326919894 1.697697062 0.012706316 0.191464126 4.01E-05 4.396560412 -0.358009955 GESSSPS(ph)PSAEK ddPTM_HeLa_CUDC101_4h_R1 1 GESSSPSPSAEK 12 0 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 GES(0.007)S(0.058)S(0.302)PS(0.619)PS(0.013)AEK 171.73 8.08E-07 22203000 2966.9 1819.3 2533.2 2864.7 2784 2739.8 2151.7 1499.7 2237.7 2671.9 TRUE FALSE FALSE 2619.12448 1875.350477 2670.152455 2981.534848 2578.629867 2687.54288 2234.69179 1670.419786 2145.461059 2656.00742 0.98611339 0.706078779 1.005325676 1.122562695 0.970866966 1.011873257 0.84137257 0.628921355 0.807776756 1 11.37504346 -4.395197728 2.407756686 0.982267218 0.596288036 0.406130779 0.11377105 0.239136519 2.026005185 0.013968947 0.167558769 4.03E-05 4.395197728 -0.385979182 APSLPAPPYAGAPGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 APSLPAPPYAGAPGSPR 17 0 Q69YU3 Q69YU3 ANKRD34A Ankyrin repeat domain-containing protein 34A 1 0 APS(0.015)LPAPPY(0.003)AGAPGS(0.982)PR;APSLPAPPY(0.007)AGAPGS(0.993)PR ; 82.707 0.0107 25239000 2286.55 2413.73 1962.05 1824.9 2214.92 2182.82 2247.63 2322.37 2178.35 2397.88 TRUE FALSE FALSE 2018.524075 2488.09416 2068.124358 1899.32731 2051.529764 2141.186345 2334.321842 2586.739213 2088.557491 2383.617303 0.84683228 1.043831221 0.867641108 0.796825609 0.860679171 0.898292835 0.979319054 1.085215823 0.876213429 1 11.21893691 -4.394962358 2.658881113 0.914687039 1.09624674 0.390967519 0.070419488 0.353444084 3.829495162 0.011469226 0.121922809 4.03E-05 4.394962358 0.181559701 NNPS(ph)PPPDSDLER ddPTM_HeLa_CUDC101_4h_R1 2 NNPSPPPDSDLER 13 0 E7ESD5;E9PLN6;F2Z2Y1;O95677-3;O95677-5;O95677-2;O95677-4;O95677 E7ESD5 EYA4 Eyes absent homolog;Eyes absent homolog 4 1 0 NNPS(0.999)PPPDS(0.001)DLER;NNPS(1)PPPDSDLER ; 184.87 5.84E-11 162221000 3610.9 3598.3 3556 2966.1 3822.7 3658.2 3615.1 3621 3928.2 3963.3 TRUE FALSE FALSE 3187.635776 3709.159358 3748.248116 3087.070379 3540.707037 3588.42593 3754.535618 4033.200003 3766.277933 3939.726115 0.809100857 0.94147645 0.951398145 0.78357487 0.898719082 0.910831318 0.952994068 1.023725986 0.955974558 1 11.94387962 -4.394694285 1.980896259 0.903271507 1.041185558 0.252092491 0.062577738 0.765268475 3.912295976 0.011296044 0.172389486 4.03E-05 4.394694285 0.137914051 SPRPT(ph)SAPAITQGQVAEGGVLDASAK ddPTM_HeLa_CUDC101_4h_R1 1 SPRPTSAPAITQGQVAEGGVLDASAK 26 1 P11171;A0A2R8Y5G2;P11171-7;P11171-2;A0A2R8Y5Z6;A0A2R8Y570;A0A2R8YCW8;A0A3B3IU06;A0A2R8Y6G5;A0A2R8YFR9;A0A2R8YD30;Q4VB86;A0A2U3TZH6;A0A2R8Y420;P11171-3;P11171-5;P11171-4;A0A3B3ITP0;A0A2R8Y7N0;A0A2R8Y7Y3;A0A3B3IUD6;A0A2R8Y4N6;P11171-6;A0A2R8Y5C8;A0A2R8Y6D0;A0A1B0GWG0 P11171 EPB41 Protein 4.1 1 0 S(0.285)PRPT(0.343)S(0.343)APAIT(0.029)QGQVAEGGVLDASAK 75.654 0.00023637 13755000 1589.4 1348.3 1290.8 1493.1 1620.9 1334.4 1118 742.7 1324.2 1457.4 TRUE FALSE FALSE 1403.092941 1389.839525 1360.584552 1553.995072 1501.329436 1308.948543 1161.121635 827.2459659 1269.615916 1448.73132 0.968497693 0.959349402 0.93915589 1.072659264 1.036306329 0.903513664 0.801474793 0.571014069 0.876363959 1 10.50057434 -4.394572474 1.512490619 0.988452377 0.475725107 0.847615975 0.053095395 0.176196045 0.445354845 0.006036088 0.124173359 4.03E-05 4.394572474 -0.51272727 FNDS(ph)EGDDTEET(ph)EDYR ddPTM_HeLa_CUDC101_4h_R1 2 FNDSEGDDTEETEDYR 16 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 FNDS(0.99)EGDDT(0.501)EET(0.509)EDYR;FNDS(0.997)EGDDT(0.018)EET(0.985)EDYR ; 175.77 1.30E-06 121272000 5557.6 4120 4166.2 4331.9 4565.8 4904.6 5474.7 6408.7 4611.1 4346.9 TRUE FALSE FALSE 4906.146553 4246.932317 4391.437374 4508.573606 4228.99003 4811.052927 5685.861013 7138.240503 4421.028506 4321.044445 1.135407565 0.982848561 1.016290721 1.043399035 0.978696258 1.113400472 1.315853397 1.65197109 1.023138864 1 12.07716435 -4.394322585 1.724208069 1.048431223 1.767653644 0.94481955 0.047007061 0.146923544 0.522037265 0.008833272 0.158464445 4.03E-05 4.394322585 0.719222421 QISLAPETLDSSGDVS(ph)PGPR ddPTM_HeLa_CUDC101_4h_R1 1 QISLAPETLDSSGDVSPGPR 20 0 Q8TER5;Q8TER5-2 Q8TER5 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 QISLAPETLDS(0.006)S(0.036)GDVS(0.958)PGPR 189.15 7.21E-26 0 577.96 413.34 398.04 586.63 460 487.49 615.73 755.96 434.26 391.26 TRUE FALSE FALSE 510.2124049 426.0745155 419.5592464 610.555307 426.0667164 478.1919405 639.4789124 842.0154307 416.359619 388.9327681 1.311826739 1.095496575 1.078744916 1.569822234 1.095476523 1.229497691 1.644188828 2.164938261 1.070518231 1 8.603376979 -4.394036423 1.650418108 1.16719563 2.380230187 0.800857051 0.155420806 0.262222271 0.830836659 0.024620293 0.463710832 4.04E-05 4.394036423 1.213034557 up SCVEEPEPEPEAAEGDGDK ddPTM_HeLa_CUDC101_4h_R1 2 SCVEEPEPEPEAAEGDGDK 19 0 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 0 0 ; ; 188.92 6.62E-11 28069000 7138.2 5473 5921.1 5264.3 5034.3 5509.7 5120.9 4590.4 6543.7 6392.1 FALSE FALSE TRUE 6301.471017 5641.616643 6241.212576 5479.000908 4662.929719 5404.611652 5318.414828 5112.952581 6273.965916 6354.079505 0.991720518 0.887873159 0.982237092 0.862280824 0.733848186 0.850573501 0.837007913 0.804672428 0.987391787 1 12.63346743 -6.408042896 1.143208687 0.994229773 0.808777983 0.732638228 0.045401652 0.159372536 0.413686518 0.007872372 0.014571904 3.91E-07 6.408042896 -0.185451791 EAVAPVQEES(ph)DLEK ddPTM_HeLa_CUDC101_4h_R1 1 EAVAPVQEESDLEK 14 0 E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E9PGG1;E7ETL8;E7ESD3;E7EMU4;Q13409;Q13409-7;Q13409-5;E7ET01;E7ERR6;E7EUM4;E7ERH4;E7EU01 E7EQL5 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 0 EAVAPVQEES(1)DLEK 99.747 0.0078531 4371200 1703.5 1426.1 1582.3 1465.8 1408.2 1641.8 1853.9 2236 1350.3 1485.8 TRUE FALSE FALSE 1503.818312 1470.036451 1667.843924 1525.58166 1304.319892 1610.4854 1925.405544 2490.537202 1294.640062 1476.962396 1.01818321 0.995310683 1.129239261 1.032918417 0.88310975 1.090403795 1.303625299 1.686256339 0.876555873 1 10.52841738 -4.393812772 1.763095473 1.010958223 1.809980181 0.899540741 0.071942407 0.119204628 0.448651365 0.008267535 0.144932443 4.04E-05 4.393812772 0.799021958 HTPPTIGGS(ph)LPYR ddPTM_HeLa_CUDC101_4h_R1 4 HTPPTIGGSLPYR 13 0 H0Y6B5;B7Z836;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-3;Q9NYB9-2;Q9NYB9-4;Q9NYB9;H7C3Q7;E9PEZ7 H0Y6B5 ABI2 Abl interactor 2 1 0 HTPPT(0.048)IGGS(0.952)LPYR;HTPPT(0.292)IGGS(0.708)LPYR;HTPPT(0.027)IGGS(0.973)LPYR;HT(0.001)PPT(0.235)IGGS(0.764)LPYR ;;; 116.9 0.0022754 100419000 12856.7 9928.88 9875.69 10484.08 12581.66 10559.64 9074.36 6802.37 10370.72 11261.35 TRUE FALSE FALSE 11349.65712 10234.77702 10409.59967 10911.6661 11653.53601 10358.23246 9424.361105 7576.724305 9943.234532 11194.36699 1.013872167 0.914279211 0.929896231 0.974746148 1.041017864 0.925307565 0.841884236 0.676833653 0.888235533 1 13.45048533 -4.393577963 1.394604517 0.993554972 0.593450971 0.739590873 0.050838707 0.265578742 0.543821367 0.006195492 0.138119282 4.04E-05 4.393577963 -0.400104001 RNS(ph)SS(ph)PVSPASVPGQR ddPTM_HeLa_CUDC101_4h_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 RNS(0.931)S(0.074)S(0.726)PVS(0.264)PAS(0.005)VPGQR 103.66 0.006024 27514000 2550.5 2713.9 2417.2 2422.7 2484.5 2373.1 2798 3208.7 2491.4 2753 TRUE FALSE FALSE 2251.534256 2797.512042 2547.881144 2521.508178 2301.223385 2327.837071 2905.919797 3573.965438 2388.703437 2736.625034 0.822741234 1.022248941 0.931030416 0.921393376 0.840898317 0.85062332 1.061862609 1.30597557 0.872864718 1 11.41818206 -4.393375032 2.81256265 0.915001413 1.326845215 0.786393113 0.063769081 0.135752155 1.679010732 0.010897237 0.108832704 4.04E-05 4.393375032 0.411843801 SASSGAEGDVSS(ph)EREP ddPTM_HeLa_CUDC101_4h_R1 2 SASSGAEGDVSSEREP 16 1 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 1 0 SASSGAEGDVS(0.03)S(0.97)EREP;SASSGAEGDVS(0.033)S(0.967)EREP ; 197.73 1.31E-15 52434000 10697.8 8842.2 8578.6 7966.6 9588.5 9799.5 10192.9 11119.5 9328.3 9482.8 TRUE FALSE FALSE 9443.820101 9114.617701 9042.385065 8291.512383 8881.175458 9612.590865 10586.04357 12385.29893 8943.783526 9426.395884 1.00184845 0.966924985 0.95926218 0.879605788 0.942160245 1.01975251 1.123021322 1.313895479 0.948802027 1 13.20249056 -4.391486638 1.798177694 0.982463641 1.372741606 0.886453807 0.039131941 0.184988295 0.730598955 0.006444307 0.111409702 4.06E-05 4.391486638 0.390277965 RIS(ph)QVSSGETEYNPTEAR ddPTM_HeLa_CUDC101_4h_R1 1 RISQVSSGETEYNPTEAR 18 1 H0Y764;A0A494C1V1;Q6ZNJ1-2;Q6ZNJ1-3;Q6ZNJ1;H7C3Y7 H0Y764 NBEAL2 Neurobeachin-like protein 2 1 0 RIS(1)QVSSGETEYNPTEAR 103.73 0.0025444 5909000 1317.3 1135.9 853.07 910.12 1170.1 1025.4 1278.7 1543.9 1067.3 1073.4 TRUE FALSE FALSE 1162.888091 1170.895733 899.1895446 947.2386275 1083.784054 1005.842203 1328.019887 1719.651335 1023.305442 1067.015369 1.089851304 1.097356014 0.842714707 0.887746002 1.015715505 0.942668899 1.24461177 1.611646266 0.959035335 1 10.05936524 -4.390959249 2.572004676 1.01483039 1.658192969 0.842233406 0.083906999 0.119787082 1.190957648 0.01291842 0.144916662 4.06E-05 4.390959249 0.64336258 ANSTSDSVFTET(ph)PSPVLK ddPTM_HeLa_CUDC101_4h_R1 1 ANSTSDSVFTETPSPVLK 18 0 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 1 0 ANSTSDSVFTET(0.617)PS(0.382)PVLK 195.55 5.84E-16 25271000 2230.1 1827.2 1478.4 2290.4 1978.2 1551.4 1520.6 1092.9 1767.2 1467.4 TRUE FALSE FALSE 1968.691059 1883.493866 1558.326776 2383.812412 1832.272127 1521.80963 1579.250051 1217.311318 1694.355268 1458.67184 1.349646305 1.291238931 1.068318955 1.634234889 1.256123603 1.043284438 1.082663015 0.83453405 1.161573989 1 10.51043964 -4.390649138 1.424446809 1.207928918 0.757252763 0.339044002 0.171575652 1.081306405 2.328578731 0.029166395 0.643960655 4.07E-05 4.390649138 -0.450676155 VTSSMSSPS(ph)MQPK ddPTM_HeLa_CUDC101_4h_R1 1 VTSSMSSPSMQPK 13 0 A0A2R8Y7R9;Q13136-2;Q13136 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 VTSSMS(0.004)S(0.298)PS(0.698)MQPK 103.43 0.012158 33019000 5521.3 3666.2 3695.3 4400 4362.5 3797.9 4443.2 4670.2 4366 4049.3 TRUE FALSE FALSE 4874.101584 3779.151276 3895.079096 4579.451018 4040.687066 3725.461385 4614.575712 5201.83669 4186.031632 4025.214584 1.210892359 0.938869518 0.967669925 1.137691152 1.00384389 0.925531126 1.146417319 1.29231289 1.039952416 1 11.97484998 -4.38997169 3.832204456 1.066484691 1.290627513 0.407115192 0.090544161 0.234021934 5.413075808 0.015185654 0.11056616 4.07E-05 4.38997169 0.224142821 SDAGLESDTAMK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 SDAGLESDTAMKK 13 1 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 1 ; SDAGLESDTAMK(1)K;SDAGLESDTAMK(1)K 181.66 4.12E-08 2205200 1581.87 2309.7 1778.08 1750.7 2059.17 2167.24 2158.1 1729.42 1690.71 2402.1 FALSE TRUE FALSE 1396.445597 2380.859119 1874.208383 1822.101113 1907.269132 2125.903508 2241.33864 1926.290182 1621.018218 2387.812202 0.584822205 0.997088095 0.784906108 0.763083927 0.798751732 0.890314366 0.938657838 0.806717622 0.678871737 1 11.22147366 -5.258890855 23.58919938 0.809680142 0.884572737 0.073548479 0.122857354 305.7079569 2829581.639 0.022824296 0.05531424 5.51E-06 5.258890855 0.074892594 SDALETLGFLNHYQMK ddPTM_HeLa_CUDC101_4h_R1 1 SDALETLGFLNHYQMK 16 0 P14866;M0QXS5;A0A3B3ITJ4;P14866-2;M0QYT0;M0R076 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 0 121.18 0.030696 13043000 1983.2 1591.4 1339.3 1597.3 1883.9 1869.7 1750.7 1435 1566.5 1938.5 FALSE FALSE TRUE 1750.732302 1640.429148 1411.706609 1662.444798 1744.92845 1834.038588 1818.225085 1598.3546 1501.928207 1926.969716 0.90854168 0.851299911 0.732604461 0.862724922 0.905529773 0.951773436 0.943567027 0.829465345 0.779424915 1 10.91211818 -8.372677798 0.956991075 0.987228237 0.873429283 0 0.08865803 0.405043228 0.770359445 0.02241033 0.013825898 4.24E-09 8.372677798 -0.113798954 AS(ph)PLLSDK ddPTM_HeLa_CUDC101_4h_R1 1 ASPLLSDK 8 0 A0A590UJM5;C9J637;A0A590UJ51;H0Y7H7;H0Y599;Q8N1I0-2;Q8N1I0;Q8N1I0-3 A0A590UJM5 DOCK4 Dedicator of cytokinesis protein 4 1 0 AS(1)PLLSDK 85.807 0.034864 15788000 3465.9 2935 2864.5 2601.3 3363.2 3218.3 2753.2 2398 2846 2848.8 TRUE FALSE FALSE 3059.632456 3025.423871 3019.363535 2707.392258 3115.103436 3156.91629 2859.391846 2670.978627 2728.686675 2831.855211 1.08043393 1.06835401 1.066213952 0.95604897 1.100022143 1.114787323 1.009723885 0.943190392 0.96356857 1 11.46753179 -4.389797269 3.906181275 1.046019597 0.944297964 0.253511845 0.051945044 0.227687239 5.436595835 0.006826474 0.048920455 4.08E-05 4.389797269 -0.101721633 EPSAPSIPTPAYQS(ph)S(ph)PAGGHAPTPPTPAPR ddPTM_HeLa_CUDC101_4h_R1 2 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPR 30 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 2 0 EPSAPS(0.001)IPT(0.032)PAY(0.099)QS(0.909)S(0.923)PAGGHAPT(0.018)PPT(0.017)PAPR;EPS(0.001)APS(0.002)IPT(0.026)PAY(0.205)QS(0.855)S(0.822)PAGGHAPT(0.08)PPT(0.01)PAPR ; 75.044 9.30E-05 23847000 1787.99 1700.84 1574.82 1569.62 2327.3 1602.55 1400.65 976.13 2047.5 1667.56 TRUE FALSE FALSE 1578.404523 1753.240864 1659.959533 1633.635888 2155.619716 1571.984029 1454.67354 1087.248694 1963.101183 1657.641279 0.952199093 1.057672059 1.001398526 0.985518344 1.300413873 0.948325822 0.877556295 0.655901073 1.184273828 1 10.69491612 -4.389205855 2.15157013 1.006409039 0.61480816 0.523740963 0.112545876 0.294934718 1.856254399 0.0141072 0.198678839 4.08E-05 4.389205855 -0.391600879 NSTLPMEET(ph)SPCSSR ddPTM_HeLa_CUDC101_4h_R1 1 NSTLPMEETSPCSSR 15 0 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 NSTLPMEET(0.676)S(0.318)PCS(0.005)S(0.001)R 130.47 0.0032379 12452000 3835.3 3849.2 3153.1 3386.7 3572.4 3765.8 2528.7 1508.4 3761.7 2545.3 TRUE FALSE FALSE 3385.731948 3967.78929 3323.566124 3524.824265 3308.871169 3693.973639 2626.232806 1680.110159 3606.641134 2530.160442 1.338149111 1.568196713 1.313579198 1.393122826 1.307771284 1.459976046 1.037970858 0.664033051 1.425459458 1 11.30501316 -4.388819174 3.348197372 1.246606211 0.653055927 0.569530187 0.168883016 0.195842237 3.530212172 0.028899336 0.240034256 4.08E-05 4.388819174 -0.593550284 SDATADDLIDVVEGNR ddPTM_HeLa_CUDC101_4h_R1 2 SDATADDLIDVVEGNR 16 0 Q9Y295 Q9Y295 DRG1 Developmentally-regulated GTP-binding protein 1 0 0 ; ; 231.74 2.24E-42 18449900 3829.2 3072.4 2633.5 2867.7 3109.9 3204.8 2874.3 2895.1 3468.1 3163.4 FALSE FALSE TRUE 3380.346981 3167.057002 2775.874976 2984.657201 2880.488873 3143.67378 2985.162714 3224.666482 3325.14345 3144.583956 1.074974314 1.007146588 0.882747929 0.949142158 0.91601589 0.999710557 0.949302914 1.025466811 1.0574192 1 11.61865344 -6.988847177 24.93768896 1.035702219 0.95296769 0.493490764 0.041296376 150.9027803 337416.4895 0.007204781 0.009464302 1.03E-07 6.988847177 -0.082734529 S(ph)PEPGQTWTR ddPTM_HeLa_CUDC101_4h_R1 3 SPEPGQTWTR 10 0 Q09666;E9PKR9;E9PLK4;E9PJZ0;E9PJC6;Q09666-2 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(1)PEPGQTWTR;S(1)PEPGQTWTR;S(1)PEPGQTWTR ;; 151.55 0.00038444 512650000 2435.61 2052.05 1825.75 2124.75 1977.33 2108.07 1741.4 1405.98 1834.98 1683.4 TRUE FALSE FALSE 2150.111488 2115.271228 1924.455568 2211.406489 1831.466305 2067.862077 1808.566381 1566.03108 1759.341348 1673.387062 1.284885928 1.264065724 1.150036122 1.321515231 1.094466634 1.235734472 1.08078186 0.935845099 1.051365454 1 10.70855547 -4.388364234 3.163556827 1.163520224 0.928674434 0.347227312 0.100027925 0.318761551 5.109023552 0.01723991 0.152451634 4.09E-05 4.388364234 -0.23484579 SDDDGFEIVPIEDPAK ddPTM_HeLa_CUDC101_4h_R1 1 SDDDGFEIVPIEDPAK 16 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 0 0 190.85 1.47E-10 10609000 2319.2 2216.4 2305.4 2233.2 2511.6 2215.2 2325.8 2556.9 2534.8 2431 FALSE FALSE TRUE 2047.346892 2284.684657 2430.036897 2324.279549 2326.324272 2172.948751 2415.506885 2847.967161 2430.314471 2416.540304 0.847222324 0.94543619 1.005585089 0.961821139 0.962667276 0.899198225 0.999572356 1.178530793 1.005699953 1 11.23872734 -4.308555674 2.836539121 0.936658299 1.209051398 0.635132046 0.049624896 0.19838424 2.334345496 0.008653598 0.117411559 4.91E-05 4.308555674 0.272393098 YEDSDKPFVDS(ph)PASR ddPTM_HeLa_CUDC101_4h_R1 2 YEDSDKPFVDSPASR 15 1 O94913;E9PKN0;E9PQ01 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 YEDSDKPFVDS(0.998)PAS(0.002)R;YEDSDKPFVDS(0.678)PAS(0.322)R ; 127.05 0.0029791 7965800 2208.85 1962.6 1886.3 1816.61 2191.57 2178.8 1656.2 1102.49 2564.83 2106.14 TRUE FALSE FALSE 1949.931951 2023.06538 1988.279084 1890.699208 2029.902247 2137.24302 1720.080189 1227.993005 2459.106622 2093.612586 0.931371909 0.966303601 0.94968816 0.903079787 0.969569185 1.020839784 0.821584758 0.586542617 1.174575773 1 11.03177879 -4.388207177 2.685302559 0.963781086 0.56043676 0.73123006 0.074522147 0.073362315 0.808074845 0.005296868 0.056865133 4.09E-05 4.388207177 -0.403344326 S(ph)STPPLHVHVDENTPVHVHIK ddPTM_HeLa_CUDC101_4h_R1 2 SSTPPLHVHVDENTPVHVHIK 21 0 Q5BJF6-9;Q5BJF6-3;Q5BJF6-4 Q5BJF6-9 1 0 S(0.333)S(0.333)T(0.333)PPLHVHVDENTPVHVHIK;S(0.324)S(0.324)T(0.324)PPLHVHVDENT(0.027)PVHVHIK ; 50.944 0.021438 73294000 6852.6 6195.1 6717.9 6588.4 7601.6 6190.7 5460.1 3937.5 6769.4 7257.2 TRUE FALSE FALSE 6049.348616 6385.963688 7081.089995 6857.103429 7040.845113 6072.622712 5670.697886 4385.729084 6490.362467 7214.033852 0.838552846 0.88521399 0.981571495 0.950522769 0.975992802 0.841779071 0.786064774 0.607944068 0.899685613 1 12.81659048 -4.388148244 1.385923178 0.928150777 0.525324789 0.805107571 0.049402767 0.432011783 0.864160179 0.00989556 0.225856192 4.09E-05 4.388148244 -0.402825988 RDAS(ph)EETSTSVMQK ddPTM_HeLa_CUDC101_4h_R1 1 RDASEETSTSVMQK 14 1 M0QZH1;M0QX70;M0QYR7;M0R2N0;M0QZC7;Q9H0W8-2;Q9H0W8 M0QZH1 SMG9 Protein SMG9 1 0 RDAS(0.998)EETS(0.001)T(0.001)SVMQK 119 0.00015977 0 1311.9 1406 1183 1184.4 1399.8 1210.9 1509.8 1812.2 1497.3 1180.2 TRUE FALSE FALSE 1158.121071 1449.317193 1246.956558 1232.704951 1296.539543 1187.8041 1568.033492 2018.493523 1435.58066 1173.180118 0.987163909 1.235374834 1.06288586 1.050738018 1.105149604 1.012465249 1.336566711 1.720531649 1.223666032 1 10.19620881 -4.38775163 1.888443579 1.02689075 1.842672367 0.787883442 0.098231636 0.150195551 0.670707709 0.011799753 0.195436901 4.09E-05 4.38775163 0.815781617 NSEPAGLET(ph)PEAK ddPTM_HeLa_CUDC101_4h_R1 1 NSEPAGLETPEAK 13 0 P07814;V9GYZ6 P07814 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 0 NSEPAGLET(1)PEAK 160.03 0.00029531 9113800 3199 2462.2 2297.9 2361.7 2804.7 2887.4 2244.8 1585.5 2823.3 2656.7 TRUE FALSE FALSE 2824.018069 2538.057464 2422.131425 2458.020334 2597.802869 2832.327656 2331.382688 1765.986911 2706.922379 2640.89783 1.069340145 0.961058559 0.917162109 0.930751772 0.983681701 1.072486646 0.882799274 0.668707017 1.025000796 1 11.36681277 -4.387443692 2.746585527 1.011226261 0.646590507 0.778271864 0.05237266 0.127715755 1.484134832 0.008636438 0.090413222 4.10E-05 4.387443692 -0.364635754 RS(ph)SPPPPPSGSSSR ddPTM_HeLa_CUDC101_4h_R1 3 RSSPPPPPSGSSSR 14 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 RS(0.5)S(0.5)PPPPPSGSSSR;RS(0.948)S(0.052)PPPPPSGSSSR;RS(0.5)S(0.5)PPPPPSGSSSR ;; 96.489 0.0051233 78895000 947.5 617.08 804.87 992.04 755.35 943.52 720.89 567.245 753.62 781.21 TRUE FALSE FALSE 836.4354863 636.0915034 848.3837068 1032.499679 699.6293354 925.523928 748.6949688 631.8178779 722.5554646 776.5633282 1.077098874 0.819110922 1.092484896 1.329575634 0.900930175 1.191820286 0.964113217 0.813607667 0.930452725 1 9.60095977 -4.386895613 3.784111486 1.04600285 0.814227151 0.198206828 0.139265719 0.263931065 5.968821208 0.017488447 0.129392461 4.10E-05 4.386895613 -0.231775699 S(ph)PSTTYLHTPTPSEDAAIPSK ddPTM_HeLa_CUDC101_4h_R1 1 SPSTTYLHTPTPSEDAAIPSK 21 0 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 S(0.592)PS(0.129)T(0.129)T(0.129)Y(0.014)LHT(0.006)PT(0.001)PSEDAAIPSK 62.605 0.0091902 141300000 4461 3891.1 4291.4 3551.2 3960.2 4343.3 3355 2374.2 4370.5 4024.9 TRUE FALSE FALSE 3938.088342 4010.980179 4523.406065 3696.033286 3668.063936 4260.458789 3484.403474 2644.469331 4190.34614 4000.959716 0.984285927 1.002504515 1.130580257 0.923786678 0.916796018 1.064859207 0.870891916 0.66095875 1.047335249 1 11.96613039 -4.386297592 2.777458756 0.996470857 0.639754751 0.747185348 0.062043274 0.118107148 1.40792017 0.007937635 0.082270759 4.11E-05 4.386297592 -0.356716106 LLDLPAAAS(ph)SEDIERS ddPTM_HeLa_CUDC101_4h_R1 2 LLDLPAAASSEDIERS 16 1 P22466 P22466 GAL Galanin peptides;Galanin;Galanin message-associated peptide 1 0 LLDLPAAAS(0.973)S(0.027)EDIERS;LLDLPAAAS(0.955)S(0.045)EDIERS ; 210.91 2.85E-23 109496000 8266.7 8081.8 5827.3 6416.7 8674.3 6864.6 5982.9 4419.7 7821.3 6724.5 TRUE FALSE FALSE 7297.689958 8330.790679 6142.341465 6678.400761 8034.414171 6733.669192 6213.662457 4922.820783 7498.902704 6684.502375 1.09173272 1.246284347 0.918892854 0.9990872 1.201946491 1.007355344 0.929562458 0.736452844 1.1218341 1 12.70660445 -4.386171599 1.892534035 1.056714823 0.684514642 0.551232491 0.094581937 0.3706479 1.660704483 0.013274755 0.220588074 4.11E-05 4.386171599 -0.37220018 SDFTKHQQTHTGEKPYECVECEKPSISK ddPTM_HeLa_CUDC101_4h_R1 1 SDFTKHQQTHTGEKPYECVECEKPSISK 28 3 C9JVC3;A0A494C0W3;Q9BY31 C9JVC3 ZNF717 Zinc finger protein 717 0 0 11.003 0.039428 23328000 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 SDGAPAEGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 SDGAPAEGKR 10 1 F8WES8;C9JXU6;F5GZF3;C9JCL9;C9JXG5;F8WCP5;Q13769 F8WES8 THOC5 THO complex subunit 5 homolog 0 1 SDGAPAEGK(1)R 111.06 0.0055214 5255100 1074.1 1060.9 1255.8 1080.4 1102.6 944.99 1187.5 1055 1016.8 944.77 FALSE TRUE FALSE 948.1956262 1093.585072 1323.692347 1124.463382 1021.263395 926.9658902 1233.302273 1175.096936 974.8870736 939.150466 1.009631215 1.164440748 1.409457158 1.197319729 1.087433198 0.98702596 1.313210521 1.251233938 1.038052058 1 9.875212508 -7.222224278 4.592008643 1.004113445 1.202605413 0.380159358 0.109001771 0.157124111 7.847563686 0.019042484 0.023059737 5.99E-08 7.222224278 0.198491967 SGNQVSEFISNTFLDKQHEVEIPS(ph)PTQK ddPTM_HeLa_CUDC101_4h_R1 2 SGNQVSEFISNTFLDKQHEVEIPSPTQK 28 1 Q08499-6;Q08499;Q08499-10;A0A087WSZ7;Q08499-11;Q08499-9;A0A1B0GW84;Q08499-2;Q08499-3;Q08499-4;Q08499-8;Q08499-5;D6RHE0 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 SGNQVSEFISNTFLDKQHEVEIPS(0.906)PT(0.094)QK;SGNQVSEFISNTFLDKQHEVEIPS(0.944)PT(0.056)QK ; 106.11 1.96E-10 118599000 5530.4 4898.4 4929 4837 6609.2 5016 4119.4 2689.4 5439.5 5049.1 TRUE FALSE FALSE 4882.134896 5049.313898 5195.476649 5034.273767 6121.652483 4920.328157 4278.286638 2995.550425 5215.281508 5019.067729 0.972717477 1.006026252 1.035147747 1.003029654 1.219679194 0.980327109 0.852406636 0.596834031 1.03909367 1 12.2932037 -4.386082529 2.204380012 1.009009647 0.548003544 0.788552474 0.069408931 0.175117305 1.168724822 0.010207173 0.141118457 4.11E-05 4.386082529 -0.461006103 SDGIYIINLK ddPTM_HeLa_CUDC101_4h_R1 2 SDGIYIINLK 10 0 C9J9K3;A0A0C4DG17;P08865;F8WD59 C9J9K3 RPSA 40S ribosomal protein SA 0 0 ; ; 131.03 0.012001 79104000 9963.3 6803.3 5260.9 6462.9 6170.5 6507.7 5988.9 4816.3 5647.8 6124.5 FALSE FALSE TRUE 8795.417077 7012.901609 5545.320167 6726.484997 5715.314508 6383.576465 6219.893879 5364.568124 5414.995294 6088.071202 1.444696815 1.151908606 0.910850084 1.104863063 0.938772613 1.048538405 1.021652618 0.881160543 0.889443489 1 12.57176952 -6.917452738 6.145510921 1.214361493 0.993446055 0.053776602 0.156044358 0.214501555 12.7610876 0.027979003 0.036880365 1.21E-07 6.917452738 -0.220915437 ASS(ph)LNENVDHSALLK ddPTM_HeLa_CUDC101_4h_R1 1 ASSLNENVDHSALLK 15 0 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 1 0 AS(0.129)S(0.871)LNENVDHSALLK 150.28 0.00021655 7186500 1508.6 918.29 737.62 1013.2 913.29 953.31 1596.7 2268.3 1044.9 1245.1 TRUE FALSE FALSE 1331.764195 946.5814265 777.4979684 1054.522675 845.9184162 935.1272001 1658.285254 2526.514103 1001.82878 1237.69409 1.076004326 0.764794333 0.628182662 0.852005907 0.683463243 0.755539844 1.339818351 2.041307399 0.809431658 1 10.27343906 -4.385790411 2.81859442 0.935687024 2.105770715 0.827023294 0.167247182 0.124560784 1.536676456 0.028089192 0.286425995 4.11E-05 4.385790411 1.170083691 up S(ph)LELSSLAGPGEDPLSADSLGKPTR ddPTM_HeLa_CUDC101_4h_R1 3 SLELSSLAGPGEDPLSADSLGKPTR 25 1 G5E953;Q13615-3;Q13615-2;Q13615 G5E953 MTMR3 Myotubularin-related protein 3 1 0 S(1)LELSSLAGPGEDPLSADSLGKPTR;S(1)LELSSLAGPGEDPLSADSLGKPTR;S(1)LELSSLAGPGEDPLSADSLGKPTR ;; 219.57 6.57E-39 71414000 6145.4 5736.9 5784.5 5895.5 6555.1 6578.8 5189.6 4173.2 5999 5826.1 TRUE FALSE FALSE 5425.045528 5913.647089 6097.227567 6135.943973 6071.543333 6453.320351 5389.76461 4648.260219 5751.718681 5791.446098 0.936734183 1.021100255 1.052798811 1.059483913 1.048363954 1.114284799 0.930642282 0.80260787 0.993140329 1 12.49970791 -4.385326227 3.756804505 0.999324328 0.802732006 0.608741243 0.052269432 0.158736378 3.543992889 0.008854366 0.066116308 4.12E-05 4.385326227 -0.196592322 LISS(ph)VEDFTEFV ddPTM_HeLa_CUDC101_4h_R1 2 LISSVEDFTEFV 12 0 P49815;X5D2U8;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4 P49815 TSC2 Tuberin 1 0 LIS(0.03)S(0.97)VEDFTEFV;LIS(0.063)S(0.937)VEDFTEFV ; 192.1 4.65E-21 732750 870.668 615.93 704.1 664.32 750.09 900.61 614.197 357.43 507.58 833.9 TRUE FALSE FALSE 768.6096169 634.9060732 742.1657758 691.413841 694.7573551 883.4323648 637.886784 398.1183864 486.6573376 828.9399257 0.927219926 0.765925314 0.895319133 0.834094027 0.838127509 1.065737501 0.769521125 0.480274112 0.587083964 1 9.695123741 -4.385094301 3.105823916 0.932509593 0.463206899 0.326475261 0.138665338 0.123721464 1.901424905 0.012968781 0.11811672 4.12E-05 4.385094301 -0.469302694 TS(ph)VQTEDDQLIAGQSAR ddPTM_HeLa_CUDC101_4h_R1 2 TSVQTEDDQLIAGQSAR 17 0 G3XAM7;P35221-3;P35221;P35221-2;A0A0A0MTJ6;A0A0A0MRI5;P26232-4;P26232-6;P26232-3;P26232-2;P26232-5;P26232 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 0 T(0.023)S(0.977)VQTEDDQLIAGQSAR;T(0.003)S(0.997)VQTEDDQLIAGQSAR ; 337.95 1.02E-191 49964000 4697.8 3748 2943.7 3187.7 3402.4 3000.5 2710.6 1884.37 3343.3 3117.1 TRUE FALSE FALSE 4147.131005 3863.471438 3102.845326 3317.708184 3151.411731 2943.270462 2815.14875 2098.879064 3205.487759 3098.559351 1.338406187 1.246860557 1.001383216 1.07072604 1.017057082 0.94988352 0.908534719 0.677372555 1.034509072 1 11.59738189 -4.384485955 0.622121827 1.16003016 0.462947594 0.622197164 0.104838413 1.747291196 0.504647102 0.025564951 0.840089876 4.13E-05 4.384485955 -0.697082567 LSSS(ph)DRYSDASDDS(ph)FSEPR ddPTM_HeLa_CUDC101_4h_R1 1 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 2 0 LS(0.036)S(0.266)S(0.515)DRYS(0.182)DAS(0.004)DDS(0.963)FS(0.034)EPR 177.09 8.22E-07 12800000 1272 1102 1163 1108.3 1302.4 1332.2 1036.5 959.91 1059.1 1238.6 TRUE FALSE FALSE 1122.898088 1135.951314 1225.875298 1153.501264 1206.324547 1306.790505 1076.478152 1069.182274 1015.44345 1231.232752 0.912011223 0.922612976 0.995648707 0.936866943 0.979769702 1.061367562 0.874309224 0.868383555 0.824737198 1 10.2658878 -4.384336604 0.006613136 1.864043178 3.56E-07 0 0.072561363 27833.24381 30.26775714 4075.190259 4463.1941 4.13E-05 4.384336604 -1.864042822 SDGSGTYTK(ac)LQNTQVR ddPTM_HeLa_CUDC101_4h_R1 1 SDGSGTYTKLQNTQVR 16 1 H3BTW3;Q3L8U1-2;Q3L8U1-3;Q3L8U1;H3BSP3 H3BTW3 CHD9 Chromodomain-helicase-DNA-binding protein 9 0 1 SDGSGTYTK(1)LQNTQVR 214.47 3.41E-25 695740 0 0 0 0 0 0 71.707 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 74.47276301 0 0 0 0 AVS(ph)PSNPK ddPTM_HeLa_CUDC101_4h_R1 2 AVSPSNPK 8 0 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 AVS(0.794)PS(0.206)NPK;AVS(0.797)PS(0.203)NPK ; 100.25 0.018618 387740000 9447.3 3993.5 9906.1 9910.6 6058.2 6086.7 6297.8 3121.2 8400.3 10545 TRUE FALSE FALSE 8339.901815 4116.535002 10441.65373 10314.79711 5611.298656 5970.606339 6540.708256 3476.504792 8054.036078 10482.27787 0.795619227 0.392713783 0.996124493 0.984022484 0.535312909 0.569590542 0.623977759 0.33165547 0.768347889 1 13.35566464 -4.384026725 0.165191674 1.060860896 1.36E-16 0.300172427 0.196578896 14.53916699 0.439572783 0.453948686 3.380657169 4.13E-05 4.384026725 -1.060860896 SDK(ac)PDMAEIEK(ac)FDK ddPTM_HeLa_CUDC101_4h_R1 1 SDKPDMAEIEKFDK 14 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 2 SDK(1)PDMAEIEK(1)FDK 149.32 0.0014703 513870 266 168.26 194.6 125.91 315.24 247.97 332.59 206.44 260.27 212.18 FALSE TRUE FALSE 234.8198832 173.4438912 205.1206646 131.045154 291.9853732 243.2403854 345.4181077 229.9402951 249.5415604 210.9179439 1.113323404 0.822328759 0.972514054 0.621308702 1.384355299 1.153246523 1.637689526 1.090188397 1.18312153 1 7.720538028 -5.675799702 24.97746837 1.001682363 1.327674253 0.425575176 0.202297239 18.24157885 5317.662644 0.027250981 0.05450196 2.11E-06 5.675799702 0.32599189 TAQDLSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 TAQDLSSPR 9 0 Q9UHI6;Q9UHI6-2 Q9UHI6 DDX20 Probable ATP-dependent RNA helicase DDX20 1 0 TAQDLS(0.045)S(0.955)PR 94.82 0.022598 34761000 4955.8 3797.6 4187.9 4560.6 4043.1 3882 3498.6 1750.7 4241.7 4213.9 TRUE FALSE FALSE 4374.888637 3914.599555 4414.310542 4746.600981 3744.848568 3807.957318 3633.542174 1949.992611 4066.855331 4188.835535 1.044416425 0.934531691 1.05382761 1.133155251 0.894007066 0.909073007 0.86743491 0.465521407 0.970879686 1 12.03233353 -4.020683436 1.107003747 1.018377233 1.77E-17 0.852905603 0.066163187 0.654477873 0.453153453 0.009413335 0.878960524 9.53E-05 4.020683436 -1.018377233 down SQS(ph)LPNSLDYTQTSDPGR ddPTM_HeLa_CUDC101_4h_R1 1 SQSLPNSLDYTQTSDPGR 18 0 H0YNE5;H0YLG5;Q96TC7 H0YNE5 RMDN3 Regulator of microtubule dynamics protein 3 1 0 S(0.009)QS(0.988)LPNS(0.003)LDYTQTSDPGR 273.01 2.34E-86 206190000 1887.4 1640 1320.6 1281.9 1344.9 1727 1899.9 2291.7 1273.7 1724.3 TRUE FALSE FALSE 1666.161833 1690.526456 1391.995631 1334.181423 1245.689406 1694.060352 1973.179779 2552.577865 1221.197547 1714.043787 0.972064918 0.986279621 0.81211206 0.778382345 0.726754716 0.988341351 1.151183998 1.489213919 0.712465782 1 10.74318825 -4.384008435 2.100827849 0.940305106 1.562793589 0.697267175 0.121839546 0.230579257 1.35368846 0.016549031 0.244627128 4.13E-05 4.384008435 0.622488483 YYSDS(ph)DDELT(ph)VEQR ddPTM_HeLa_CUDC101_4h_R1 1 YYSDSDDELTVEQR 14 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 2 0 YYS(0.017)DS(0.984)DDELT(0.999)VEQR 115.12 0.0086287 18245000 1371.6 1188 1027.3 970.7 1376.5 1070.2 1206.5 1271.5 1243.1 1162.3 TRUE FALSE FALSE 1210.823127 1224.600872 1082.838945 1010.289342 1274.958337 1049.787718 1253.035109 1416.24242 1191.858892 1155.386588 1.047980944 1.059905736 0.937209205 0.874416712 1.103490685 0.908602998 1.084515886 1.225773637 1.031567187 1 10.17415994 -4.382519637 3.48185978 1.00842624 1.229248426 0.504845282 0.069054388 0.161042774 3.126026385 0.009244094 0.074742289 4.14E-05 4.382519637 0.220822185 NSSQSGGKPGSS(ph)PITK ddPTM_HeLa_CUDC101_4h_R1 2 NSSQSGGKPGSSPITK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 NSSQSGGKPGS(0.099)S(0.901)PITK;NSSQSGGKPGS(0.335)S(0.64)PIT(0.025)K ; 178 9.80E-07 289113000 8326.7 7428.6 7775.6 7917 8453.8 8016.9 8120.8 8259.3 8968.5 8330.5 TRUE FALSE FALSE 7350.656848 7657.466361 8195.972456 8239.88948 7830.180016 7863.99099 8434.021976 9199.505327 8598.814634 8280.949816 0.887658664 0.924708703 0.989738211 0.995041591 0.945565447 0.94964843 1.018484856 1.110923932 1.038385068 1 13.01558054 -4.382385041 1.972258074 0.950500799 1.13724253 0.487743449 0.042991665 0.344832476 1.711958751 0.006596549 0.105878983 4.15E-05 4.382385041 0.186741731 SQSLPNS(ph)LDYTQTSDPGR ddPTM_HeLa_CUDC101_4h_R1 1 SQSLPNSLDYTQTSDPGR 18 0 H0YNE5;H0YLG5;Q96TC7 H0YNE5 RMDN3 Regulator of microtubule dynamics protein 3 1 0 SQSLPNS(0.665)LDYT(0.046)QT(0.001)S(0.288)DPGR 216.53 1.07E-24 221930000 3003.9 2456.2 2039.7 2245 1712.2 2385.3 2867.1 3457.9 2064 2671.5 TRUE FALSE FALSE 2651.787396 2531.872611 2149.972352 2336.560804 1585.894417 2339.804377 2977.685007 3851.533359 1978.921046 2655.609799 0.998560631 0.953405358 0.809596482 0.879858481 0.597186536 0.881079885 1.121281074 1.450338585 0.745185173 1 11.37482747 -4.382265649 2.811672529 0.939569582 1.481037889 0.607243528 0.137296813 0.192543794 2.353636263 0.019874717 0.205535418 4.15E-05 4.382265649 0.541468307 RYS(ph)GDSDSSASSAQSGPLGTR ddPTM_HeLa_CUDC101_4h_R1 2 RYSGDSDSSASSAQSGPLGTR 21 1 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 RY(0.001)S(0.999)GDSDSSASSAQSGPLGTR;RYS(1)GDSDSSASSAQSGPLGTR ; 183.1 2.05E-13 41496000 1943.6 1601.21 1649.72 1495.39 1934.22 1752.74 1515.88 1217.52 1794.33 1753.44 TRUE FALSE FALSE 1715.774154 1650.541382 1738.908853 1556.378468 1791.536444 1719.309405 1574.347999 1356.117555 1720.366958 1743.010461 0.984373986 0.946948638 0.997646826 0.892925489 1.027840328 0.98640223 0.903234969 0.778031794 0.987008969 1 10.76736551 -4.382160582 2.188838604 0.984749201 0.751377385 0.751909349 0.035125054 0.166240557 1.083336168 0.004789822 0.067776624 4.15E-05 4.382160582 -0.233371817 T(ph)ISPSTSNNIPLMR ddPTM_HeLa_CUDC101_4h_R1 2 TISPSTSNNIPLMR 14 0 O94806;O94806-2;F8WBA3;Q15139 O94806 PRKD3;PRKD1 Serine/threonine-protein kinase D3;Serine/threonine-protein kinase;Serine/threonine-protein kinase D1 1 0 T(0.994)IS(0.005)PST(0.001)SNNIPLMR;T(0.914)IS(0.063)PS(0.007)T(0.013)S(0.003)NNIPLMR ; 145.1 0.0018058 30914000 2109.91 2065.65 1745.99 1765.95 1764.85 1777.11 1960.4 2167.09 2038.13 1782.51 TRUE FALSE FALSE 1862.589548 2129.290228 1840.383501 1837.973074 1634.660532 1743.214588 2036.013285 2413.782766 1954.117419 1771.907551 1.051177612 1.201693749 1.038645329 1.037284972 0.922542788 0.983806738 1.149051644 1.362250962 1.102832604 1 10.79108762 -4.379380533 2.772465141 1.030186018 1.384452875 0.646869064 0.071392176 0.151746893 1.788906678 0.009955935 0.105739075 4.17E-05 4.379380533 0.354266857 EGPGS(ph)EPDSQVDGGLSGASLGEK ddPTM_HeLa_CUDC101_4h_R1 1 EGPGSEPDSQVDGGLSGASLGEK 23 0 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 EGPGS(1)EPDSQVDGGLSGASLGEK 163.39 1.51E-16 0 3374.6 3414.6 2912.2 3031.9 3242.7 3228.6 3215.3 3230.8 3426.1 3424.5 TRUE FALSE FALSE 2979.034504 3519.799779 3069.642341 3155.553987 3003.492481 3167.019834 3339.315198 3598.581213 3284.874708 3404.130922 0.875123364 1.033978968 0.901740389 0.926977857 0.882308157 0.930346073 0.980959685 1.05712186 0.964967207 1 11.73307081 -4.378733925 2.594148034 0.938040205 1.067002109 0.365594135 0.047361439 0.366667518 3.671595939 0.007813498 0.090408766 4.18E-05 4.378733925 0.128961905 S(ph)LPTTVPES(ph)PNYR ddPTM_HeLa_CUDC101_4h_R1 5 SLPTTVPESPNYR 13 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 2 0 S(1)LPTTVPES(1)PNYR;S(0.999)LPT(0.001)TVPES(0.999)PNY(0.001)R;S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR ;;;; 191.96 8.93E-11 2084910000 12751.61 11706.3 13079.86 9747.32 10897.83 11115.63 12720.92 14491.96 24390.72 12160.94 TRUE FALSE FALSE 11256.88561 12066.95723 13786.9968 10144.85784 10093.91879 10903.61788 13211.57015 16141.66615 23385.3242 12088.60619 0.931197975 0.998209143 1.140495156 0.839208233 0.834994427 0.901974778 1.092894411 1.335279345 1.934493012 1 13.56136029 -4.378441091 2.824516463 0.959621472 1.358967816 0 0.319652367 0.161014715 1.98254984 0.012255399 0.127570773 4.18E-05 4.378441091 0.399346344 TAPTLS(ph)PEHWK ddPTM_HeLa_CUDC101_4h_R1 5 TAPTLSPEHWK 11 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 TAPT(0.402)LS(0.597)PEHWK;T(0.001)APT(0.261)LS(0.738)PEHWK;TAPT(0.001)LS(0.999)PEHWK;T(0.001)APT(0.135)LS(0.864)PEHWK;TAPT(0.011)LS(0.989)PEHWK ;;;; 134.75 0.0016948 506397000 17234.4 14824.5 13081.4 14302.2 14541.8 13759.9 10833.8 9652.9 16253.8 15184.8 TRUE FALSE FALSE 15214.20976 15281.22527 13788.62005 14885.50554 13469.08039 13497.45283 11251.6633 10751.74712 15583.81148 15094.48013 1.007932014 1.01237175 0.913487575 0.986155562 0.892318269 0.894197926 0.745415754 0.712296616 1.0324179 1 13.88173345 -4.378263472 0.566927282 1.00468019 0.509617527 0.910406884 0.032066853 0.555951701 0.130503991 0.005354629 0.1755459 4.19E-05 4.378263472 -0.495062663 SQLPTLEQDGGTQNPVSS(ph)PGMSQELR ddPTM_HeLa_CUDC101_4h_R1 1 SQLPTLEQDGGTQNPVSSPGMSQELR 26 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8;H0YCI3;P46937-4 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 SQLPTLEQDGGTQNPVS(0.219)S(0.777)PGMS(0.003)QELR 169.05 1.94E-13 16072000 3227.2 3103 2890.5 2729.2 3204.8 2959 2496.3 1919.6 3338 2949 TRUE FALSE FALSE 2848.912508 3198.599752 3046.769173 2840.508573 2968.388289 2902.562005 2592.583127 2138.119505 3200.406227 2931.459217 0.971841086 1.09112886 1.039335344 0.968974276 1.012597505 0.99014238 0.884400203 0.729370374 1.091745097 1 11.51740327 -4.378050907 1.868295599 0.999185284 0.679704358 0.797319034 0.045473317 0.184834482 0.791062007 0.005419894 0.094213045 4.19E-05 4.378050907 -0.319480925 SDPIMLLK(ac)DR ddPTM_HeLa_CUDC101_4h_R1 2 SDPIMLLKDR 10 1 P08559-3;P08559;P08559-2;P08559-4;Q5JPU3 P08559-3 PDHA1 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial" 0 1 ; SDPIMLLK(1)DR;SDPIMLLK(1)DR 103.26 0.0091121 2749500 441.98 360.81 155.4 285.81 364.82 424.9 211.2 254.73 119.25 122.82 FALSE TRUE FALSE 390.1717744 371.9261284 163.8013941 297.4665672 337.9079554 416.7957404 219.3460547 283.7274335 114.3344645 122.0894612 3.195785866 3.046340977 1.341650561 2.43646392 2.767707812 3.413855188 1.796601055 2.32393059 0.936481031 1 6.931794861 -6.015339413 23.77782974 2.098099475 2.582557132 0.114968766 0.814949327 966.1827284 1497698.316 0.146713415 0.248871854 9.65E-07 6.015339413 0.484457657 S(ph)LHGPCPVTTFGPK ddPTM_HeLa_CUDC101_4h_R1 1 SLHGPCPVTTFGPK 14 0 O95544;O95544-2 O95544 NADK NAD kinase 1 0 S(1)LHGPCPVTTFGPK 117.48 0.0017641 23544000 2210.9 1560.4 1384.9 1590.2 1504.1 1529.1 1649.6 1731.2 1447.7 1353.6 TRUE FALSE FALSE 1951.741654 1608.474074 1459.771883 1655.055229 1393.14554 1499.934965 1713.225625 1928.27281 1388.025193 1345.548727 1.450517261 1.19540381 1.084889647 1.230022515 1.035373533 1.114738497 1.273254242 1.433075422 1.031568137 1 10.39397892 -4.377797205 3.278465231 1.189979404 1.440457585 0.273967804 0.131196885 0.405781257 6.97083722 0.024307112 0.212136911 4.19E-05 4.377797205 0.25047818 FVAFSGEGQS(ph)LR ddPTM_HeLa_CUDC101_4h_R1 1 FVAFSGEGQSLR 12 0 Q92890;Q92890-1 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 0 FVAFS(0.001)GEGQS(0.999)LR 89.663 0.021938 7378800 1370.4 932.02 548.41 749.4 786.66 996.02 1091.3 1352.5 596.18 668.94 TRUE FALSE FALSE 1209.763789 960.7344315 578.0587034 779.9637712 728.629659 977.022578 1133.391807 1506.463133 571.6052081 664.9611151 1.819300049 1.444797913 0.86931204 1.172946438 1.09574777 1.469292799 1.704448246 2.265490566 0.859606968 1 9.377126169 -4.377453927 1.788157587 1.327023764 2.442946123 0.536165208 0.296334263 0.538251974 2.051892749 0.050915962 0.932416204 4.19E-05 4.377453927 1.115922359 VLT(ph)PPQAAGDGILATTANQR ddPTM_HeLa_CUDC101_4h_R1 1 VLTPPQAAGDGILATTANQR 20 0 Q96QT6-5;Q96QT6-3;Q96QT6;C9J9G2;Q96QT6-2;Q96QT6-4;K7EPF7 Q96QT6-5 PHF12 PHD finger protein 12 1 0 VLT(1)PPQAAGDGILATTANQR 94.313 0.0064123 23366000 2505.1 2494.5 2151.3 2711.8 2758.3 2381 2671.9 2805.2 2928.8 3052.9 TRUE FALSE FALSE 2211.455975 2571.352588 2267.605785 2822.398925 2554.825704 2335.586392 2774.956078 3124.532629 2808.073624 3034.741215 0.728713198 0.84730539 0.747215537 0.930029523 0.841859494 0.769616329 0.91439628 1.029587832 0.925309087 1 11.56735778 -4.377016479 3.570102104 0.854897068 1.032173203 0.309182754 0.081989018 0.316510112 6.441320933 0.01499823 0.119557844 4.20E-05 4.377016479 0.177276136 SES(ph)LDPDSSMDTTLILK ddPTM_HeLa_CUDC101_4h_R1 3 SESLDPDSSMDTTLILK 17 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.005)ES(0.995)LDPDSSMDTTLILK;S(0.001)ES(0.999)LDPDSSMDTTLILK;S(0.189)ES(0.811)LDPDSSMDTTLILK ;; 299.17 5.03E-123 41404100 6715.48 4418.24 4050.34 4489.88 5995.89 6303.68 7050.5 8532.73 5564.34 5342.67 TRUE FALSE FALSE 5928.301614 4554.360737 4269.313632 4672.996713 5553.58514 6183.447807 7322.440147 9504.061493 5334.97555 5310.891561 1.11625356 0.857551069 0.803878894 0.87988931 1.045697333 1.164295624 1.378759115 1.789541621 1.00453483 1 12.37473836 -4.376589181 1.33322895 1.007759675 2.018613262 0.875707619 0.098107446 0.341698885 0.609498706 0.017893193 0.438625779 4.20E-05 4.376589181 1.010853587 ATSS(ph)TQSLAR ddPTM_HeLa_CUDC101_4h_R1 2 ATSSTQSLAR 10 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 ATS(0.039)S(0.875)T(0.083)QS(0.003)LAR;AT(0.001)S(0.018)S(0.953)T(0.029)QSLAR ; 149.49 0.00052199 49327000 5086.7 2991.6 3381.2 4097.3 4262 3927 5130.4 6560.8 4352.9 3411.1 TRUE FALSE FALSE 4490.444737 3083.76765 3563.9979 4264.405604 3947.600751 3852.099018 5328.281247 7307.654952 4173.47162 3390.810625 1.324298297 0.909448504 1.051075478 1.257636027 1.16420561 1.136040742 1.571388625 2.155135087 1.230818256 1 11.7274145 -4.375937824 1.89944627 1.136126931 2.341373243 0.877007107 0.119336989 0.181826687 0.810109089 0.020584064 0.353798345 4.21E-05 4.375937824 1.205246312 up SEPVKEES(ph)SELEQPFAQDTSSVGPDR ddPTM_HeLa_CUDC101_4h_R1 4 SEPVKEESSELEQPFAQDTSSVGPDR 26 1 Q15424-2;Q15424;Q15424-4;Q15424-3;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 SEPVKEES(0.774)S(0.226)ELEQPFAQDTSSVGPDR;S(0.001)EPVKEES(0.492)S(0.492)ELEQPFAQDT(0.006)S(0.007)S(0.003)VGPDR;S(0.001)EPVKEES(0.499)S(0.499)ELEQPFAQDTSSVGPDR;S(0.001)EPVKEES(0.5)S(0.5)ELEQPFAQDTSSVGPDR ;;; 121.56 2.62E-10 181400000 7829.4 6618.7 6651 6669 7655.5 8830 8434.8 9106.7 7110 9808 TRUE FALSE FALSE 6911.649601 6822.614302 7010.573178 6940.990646 7090.769017 8661.582462 8760.133061 10143.36992 6816.922791 9749.66158 0.708911745 0.699779602 0.719058105 0.711921187 0.727283605 0.888398268 0.898506373 1.040381744 0.699195837 1 13.25113643 -4.375437819 1.656716516 0.817811652 1.084564059 0.35040732 0.102750645 1.015975408 3.163855315 0.019989549 0.40072097 4.21E-05 4.375437819 0.266752406 EKDAESVECPDADS(ph)LNIPDVDEEGYSIKPETNQNDTK ddPTM_HeLa_CUDC101_4h_R1 1 EKDAESVECPDADSLNIPDVDEEGYSIKPETNQNDTK 37 2 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 EKDAESVECPDADS(1)LNIPDVDEEGYSIKPETNQNDTK 100.7 8.58E-14 21638000 3843.3 2883.3 2979.2 3094.2 3570.5 3296.3 3430.1 3600.3 3531.2 3329.2 TRUE FALSE FALSE 3392.7942 2972.131055 3140.264564 3220.39485 3307.111328 3233.42857 3562.400106 4010.143599 3385.642441 3309.39777 1.025199881 0.898088191 0.948893056 0.973106007 0.999309106 0.977044403 1.07644966 1.211744214 1.023038836 1 11.69235299 -4.373660442 2.351288453 0.993928761 1.237202369 0.779015438 0.037703767 0.178289901 1.382467889 0.005945477 0.079375051 4.23E-05 4.373660442 0.243273608 S(ph)VDFDSLTVR ddPTM_HeLa_CUDC101_4h_R1 4 SVDFDSLTVR 10 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 0 S(1)VDFDSLTVR;S(1)VDFDSLTVR;S(1)VDFDSLTVR;S(1)VDFDSLTVR ;;; 215.04 2.16E-24 165394000 4458.68 4566.46 4374.55 4064.5 5097.3 4740.64 3528.82 2425.02 4575.09 3962.26 TRUE FALSE FALSE 3936.040289 4707.14722 4611.051405 4230.267878 4721.282334 4650.22019 3664.927769 2701.074475 4386.502854 3938.692301 0.999326677 1.195104075 1.170706177 1.074028524 1.198692859 1.180650793 0.930493547 0.68577951 1.113695236 1 11.943501 -4.373321372 3.310081544 1.05513679 0.673942482 0.648800713 0.090111472 0.162657078 2.847462035 0.014960904 0.130626487 4.23E-05 4.373321372 -0.381194308 IDFSSIAVPGTSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 IDFSSIAVPGTSSPR 15 0 Q5TDH0-3;Q5TDH0;Q5TDH0-2 Q5TDH0-3 DDI2 Protein DDI1 homolog 2 1 0 IDFSSIAVPGT(0.078)S(0.03)S(0.892)PR;IDFSSIAVPGT(0.212)S(0.352)S(0.437)PR ; 182.7 1.15E-10 400630000 4868.4 4548.1 4034.1 3787.5 5106.6 4497.3 3725.6 2727.1 4746.1 4367.2 TRUE FALSE FALSE 4297.733532 4688.22157 4252.195648 3941.970621 4729.896292 4411.521496 3869.29764 3037.542041 4550.463749 4341.2237 0.989982049 1.079930889 0.979492406 0.908032134 1.089530653 1.016193083 0.891291928 0.699697194 1.048198403 1 12.08388605 -4.372484944 2.427501176 1.001573522 0.667420475 0.779870639 0.051204782 0.137114172 1.152251671 0.006628743 0.08534845 4.24E-05 4.372484944 -0.334153048 SS(ph)MEMEGIFNHK ddPTM_HeLa_CUDC101_4h_R1 1 SSMEMEGIFNHK 12 0 E7EPJ7;O75962-5;O75962-4;O75962;E7EWP2;O75962-2 E7EPJ7 TRIO Triple functional domain protein 1 0 S(0.038)S(0.962)MEMEGIFNHK 92.781 0.035621 12291000 3842.1 3230.7 2961.3 2771.3 3394.1 3672.5 2672.8 1953.7 2882.5 2665.2 TRUE FALSE FALSE 3391.734862 3330.234038 3121.396835 2884.325593 3143.724005 3602.453181 2775.890791 2176.101311 2763.68213 2649.347272 1.280215281 1.257001705 1.178175798 1.088692911 1.18660322 1.359751219 1.047764036 0.82137262 1.043155859 1 11.37142125 -4.372342159 3.721899877 1.161093577 0.817782514 0.505988425 0.105435361 0.183875189 4.049313561 0.017707399 0.136607455 4.24E-05 4.372342159 -0.343311063 LRS(ph)PRGS(ph)PDGSLQTGKPSAPK ddPTM_HeLa_CUDC101_4h_R1 1 LRSPRGSPDGSLQTGKPSAPK 21 3 Q8IZL8;C9JFV4;E7EV54 Q8IZL8 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 2 0 LRS(0.999)PRGS(0.978)PDGS(0.023)LQTGKPSAPK 85.496 0.0010721 28617000 3205.8 3040.3 2913.5 3152.1 3371 2664.2 3193.9 3461.2 2772.2 3259 TRUE FALSE FALSE 2830.020984 3133.968039 3071.012623 3280.656263 3122.328046 2613.384824 3317.089793 3855.209017 2657.928743 3239.615323 0.873566983 0.967388942 0.947955951 1.012668461 0.963795925 0.806696031 1.023914713 1.190020614 0.820445787 1 11.6616068 -4.371958284 3.637881927 0.940680994 1.193781909 0.570907485 0.069332368 0.130243453 2.750027939 0.008999345 0.071106421 4.25E-05 4.371958284 0.253100914 HGS(ph)GADSDY(ph)ENTQSGDPLLGLEGK ddPTM_HeLa_CUDC101_4h_R1 1 HGSGADSDYENTQSGDPLLGLEGK 24 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QL89 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 2 0 HGS(0.665)GADS(0.474)DY(0.465)ENT(0.297)QS(0.099)GDPLLGLEGK 51.306 0.029569 21466000 4280.1 3719.3 3559 4094.4 4185.4 4424.3 3321 2235 3788.3 4090.7 TRUE FALSE FALSE 3778.393166 3833.887225 3751.410305 4261.38733 3876.65138 4339.913849 3449.092082 2489.423366 3632.144671 4066.368334 0.929181239 0.94282832 0.922545622 1.047959009 0.953344867 1.067270225 0.848199622 0.612198198 0.893215855 1 11.98952519 -4.371740279 3.063279942 0.971244551 0.594106344 0.803010608 0.053770446 0.083620747 1.236359598 0.006764567 0.065034619 4.25E-05 4.371740279 -0.377138207 FLPISST(ph)PQPER ddPTM_HeLa_CUDC101_4h_R1 2 FLPISSTPQPER 12 0 J3KNG6;Q08AE8-4;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 FLPIS(0.054)S(0.314)T(0.632)PQPER;FLPIS(0.008)S(0.048)T(0.944)PQPER ; 151.16 0.0026269 59661000 6676.9 5356.7 5569.5 5160.4 5602.3 5773.7 5704.3 5724.2 5234.2 5687.9 TRUE FALSE FALSE 5894.243904 5521.733578 5870.604017 5370.863417 5189.02949 5663.576292 5924.316762 6375.81979 5018.444061 5654.068118 1.042478403 0.97659481 1.038297363 0.949911339 0.917751499 1.001681652 1.047797203 1.127651747 0.887581111 1 12.46507355 -4.371267938 2.6060911 1.005533312 1.138240348 0.365448788 0.053020917 0.2762009 2.774138555 0.005995159 0.070793422 4.25E-05 4.371267938 0.132707037 SLGNILQAKPTSS(ph)PAKGPPQK ddPTM_HeLa_CUDC101_4h_R1 1 SLGNILQAKPTSSPAKGPPQK 21 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SLGNILQAKPT(0.037)S(0.201)S(0.762)PAKGPPQK 87.654 0.00036242 602310000 5914 5653 5189.4 4723.7 5978.7 4953.1 5528.3 5898.5 6452.7 5434 TRUE FALSE FALSE 5220.769885 5827.16223 5469.954661 4916.352904 5537.663212 4858.62787 5741.528383 6569.961397 6186.716975 5401.678326 0.966508846 1.078768834 1.012639837 0.910152846 1.025174562 0.899466347 1.062915641 1.216281496 1.145332358 1 12.39919201 -4.369944912 3.31507347 0.985607314 1.224315821 0.421496765 0.071387582 0.114235086 2.005326816 0.00657132 0.057776426 4.27E-05 4.369944912 0.238708507 SPRPAS(ph)PASNVVVLPSGSTVYVK ddPTM_HeLa_CUDC101_4h_R1 1 SPRPASPASNVVVLPSGSTVYVK 23 1 E9PMC9;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7;Q7Z589-2 E9PMC9 C11orf30;EMSY Protein EMSY 1 0 S(0.086)PRPAS(0.851)PAS(0.063)NVVVLPSGSTVYVK 104.54 1.59E-05 32549000 2085.4 1940.4 1877.8 1594.6 2079.7 2162.6 2025.4 2162.9 2184.9 1976 TRUE FALSE FALSE 1840.952573 2000.181424 1979.319548 1659.63468 1926.284674 2121.352008 2103.520356 2409.115793 2094.837497 1964.246664 0.937230851 1.018294423 1.007673621 0.844921725 0.980673512 1.079982492 1.07090438 1.226483332 1.066483928 1 10.93976039 -4.369632621 1.093275404 0.968164898 1.309002897 0.596514607 0.060422402 0.627154967 0.674301383 0.0081366 0.234726326 4.27E-05 4.369632621 0.340837998 SSADKIGEVS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 SSADKIGEVSSPK 13 1 A0A1W2PP02;P35251-2;P35251 A0A1W2PP02;P35251-2 RFC1 Replication factor C subunit 1 1 0 SSADKIGEVS(0.5)S(0.5)PK 139.77 0.0038141 11690000 3341.3 4110.2 4225.6 3747.2 4395.9 3386.4 2658.2 1468.4 3133.1 3260.4 TRUE FALSE FALSE 2949.637879 4236.83039 4454.048718 3900.027013 4071.623215 3321.810062 2760.727664 1635.556721 3003.952292 3241.006996 0.910099202 1.307257404 1.374279267 1.203338042 1.256283377 1.024931469 0.851811696 0.504644613 0.926857701 1 11.66222642 -4.369292787 2.180812157 1.054011599 0.428995586 0.556282121 0.164517944 0.382671035 2.425238445 0.028252786 0.421555924 4.27E-05 4.369292787 -0.625016013 SSS(ph)VGS(ph)SSSYPISPAVSR ddPTM_HeLa_CUDC101_4h_R1 2 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 S(0.021)S(0.026)S(0.959)VGS(0.522)S(0.375)S(0.078)S(0.018)Y(0.001)PISPAVSR;S(0.015)S(0.019)S(0.973)VGS(0.538)S(0.363)S(0.076)S(0.016)YPISPAVSR ; 142.4 0.00085748 426490000 7697.8 6233.6 6461 5854.7 7458.8 7760.5 7203.3 7776 6663.2 6707.7 TRUE FALSE FALSE 6795.475553 6425.649827 6810.301203 6093.479972 6908.579184 7612.481392 7481.133694 8661.188408 6388.540076 6667.802302 1.019147726 0.963683315 1.021371195 0.913866323 1.036110381 1.141677729 1.12197893 1.29895699 0.9581178 1 12.70299561 -4.368859259 0.945826463 1.000513645 1.404634461 0.828426421 0.044301986 0.510133828 0.38458457 0.006486638 0.202102105 4.28E-05 4.368859259 0.404120816 SMGTGDTPGLEVPSS(ph)PLRK ddPTM_HeLa_CUDC101_4h_R1 1 SMGTGDTPGLEVPSSPLRK 19 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SMGTGDTPGLEVPS(0.156)S(0.844)PLRK 177.09 3.54E-08 320950000 2012.5 1907.3 1666.6 1519.1 1829.7 1790.6 1874.7 2003.6 2151.5 1853.1 TRUE FALSE FALSE 1776.597801 1966.061652 1756.701437 1581.055464 1694.726676 1756.447288 1947.007807 2231.681725 2062.814259 1842.077679 0.964453248 1.067306593 0.953652203 0.858300104 0.920008258 0.953514235 1.056962923 1.211502507 1.119830224 1 10.84711818 -4.368543729 2.532756176 0.971906422 1.235168846 0.504006863 0.069649214 0.192316889 1.792009676 0.007819268 0.096731139 4.28E-05 4.368543729 0.263262424 TDTGIVTVEQSPSSS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 TDTGIVTVEQSPSSSK 16 0 Q8NFC6;H0Y9Y2 Q8NFC6;H0Y9Y2 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 TDTGIVTVEQS(0.29)PS(0.036)S(0.01)S(0.665)K 176.17 3.24E-07 99442000 5758.8 4983.6 5427.5 5103.8 5550.1 5295.6 4510.7 3570 4673 5290.9 TRUE FALSE FALSE 5083.762194 5137.138809 5720.927067 5311.955025 5140.68018 5194.595253 4684.67921 3976.39437 4480.376962 5259.429491 0.966599553 0.976748299 1.087746699 1.009986926 0.977421636 0.987672762 0.890720033 0.756050514 0.851875088 1 12.3606906 -4.368391991 1.789847737 0.993160678 0.706364914 0.612279848 0.055341293 0.214201846 0.807481312 0.005074097 0.096013833 4.28E-05 4.368391991 -0.286795764 RAS(ph)SDLSIASSEEDKLSQNACILESVSEK ddPTM_HeLa_CUDC101_4h_R1 2 RASSDLSIASSEEDKLSQNACILESVSEK 29 2 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 RAS(0.422)S(0.422)DLS(0.127)IAS(0.013)S(0.013)EEDKLS(0.002)QNACILESVSEK;RAS(0.262)S(0.262)DLS(0.262)IAS(0.107)S(0.107)EEDKLSQNACILESVSEK ; 66.587 0.00021255 21863000 5369.2 5311.2 4990.6 5079.2 5748.4 6056.1 4111.2 2653.1 4857.2 4562.5 TRUE FALSE FALSE 4739.830515 5474.831777 5260.406932 5286.35173 5324.351984 5940.589983 4269.770361 2955.11818 4656.98416 4535.362047 1.045083163 1.207143271 1.15986483 1.165585388 1.173964047 1.309838095 0.941439805 0.651572719 1.026816407 1 12.14700201 -4.367720971 3.638182636 1.082543954 0.643786665 0.660091119 0.101537271 0.139146353 2.945518322 0.016647935 0.132714952 4.29E-05 4.367720971 -0.438757289 ERPLQQVS(ph)PVASVPWR ddPTM_HeLa_CUDC101_4h_R1 1 ERPLQQVSPVASVPWR 16 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 ERPLQQVS(1)PVASVPWR 97.621 0.0029358 30559000 1078.4 923.93 1015.3 899.59 1141.5 875.36 1015 1112.5 1136 958.12 TRUE FALSE FALSE 951.9915867 952.3951882 1070.190189 936.2791686 1057.293819 858.6639664 1054.14889 1239.142503 1089.173599 952.4210596 0.999549072 0.999972836 1.123652379 0.983051728 1.11011176 0.901559198 1.106809724 1.301044838 1.14358412 1 9.895455711 -4.367466416 3.288699291 1.009858485 1.312268647 0.52389019 0.074073553 0.105892971 1.827455517 0.007607853 0.067963183 4.29E-05 4.367466416 0.302410162 SDSAFFWEER ddPTM_HeLa_CUDC101_4h_R1 1 SDSAFFWEER 10 0 A0A0U1RQV4;Q13464;C9JFJ0;D6REE7;O75116 A0A0U1RQV4;O75116 ROCK1;ROCK2 Rho-associated protein kinase 1;Rho-associated protein kinase 2 0 0 125.97 0.0187 7005800 418.04 369.19 321.54 508.96 495.29 418.39 417.69 303.01 460.24 546.63 FALSE FALSE TRUE 369.0379849 380.5643063 338.923425 529.7175887 458.7534435 410.4099078 433.8004432 337.5034336 441.2687124 543.3786204 0.679154407 0.700366728 0.623733456 0.974859092 0.844261121 0.755292705 0.798339182 0.621120193 0.812083317 1 9.085813993 -9.375494312 1.086028977 1.000757209 0.750768079 0.16055314 0.115399426 0.382174935 0.802603898 0.072739008 0.018532318 4.21E-10 9.375494312 -0.24998913 NLATS(ph)ADT(ph)PPSTVPGTGK ddPTM_HeLa_CUDC101_4h_R1 2 NLATSADTPPSTVPGTGK 18 0 J3KRA9;Q96Q15-4;Q96Q15-3;Q96Q15-2;Q96Q15 J3KRA9 SMG1 Serine/threonine-protein kinase SMG1 2 0 NLAT(0.122)S(0.836)ADT(0.697)PPS(0.183)T(0.161)VPGTGK;NLAT(0.271)S(0.885)ADT(0.758)PPS(0.039)T(0.044)VPGT(0.003)GK ; 99.371 0.00077797 22743000 7418.2 6003.2 5187.04 5026.4 6345.4 6216.7 4857.75 3232.85 5461.7 5558.4 TRUE FALSE FALSE 6548.649841 6188.151476 5467.467072 5231.398318 5877.312484 6098.126805 5045.115045 3600.864576 5236.566414 5525.33839 1.185203399 1.119958822 0.989526195 0.946801435 1.063701817 1.103665762 0.913087071 0.65170028 0.94773678 1 12.43184711 -4.367169461 2.262930444 1.073877979 0.594862863 0.687935845 0.078489508 0.207525621 1.444128493 0.012480101 0.179234302 4.29E-05 4.367169461 -0.479015116 AT(ph)SNVFAMFDQSQIQEFK ddPTM_HeLa_CUDC101_4h_R1 2 ATSNVFAMFDQSQIQEFK 18 0 P24844;J3KTJ1;P24844-2;J3QRS3;P19105;O14950 P24844;J3QRS3 MYL9;MYL12A;MYL12B Myosin regulatory light polypeptide 9;Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 1 0 AT(0.961)S(0.039)NVFAMFDQSQIQEFK;AT(0.937)S(0.063)NVFAMFDQSQIQEFK ; 130.16 5.21E-05 134062000 10179.3 7803.7 7207.1 7836 8168.4 9335.9 7324.6 5606.1 6102.3 7863.1 TRUE FALSE FALSE 8986.097885 8044.122747 7596.737626 8155.58595 7565.833406 9157.833262 7607.112276 6244.275763 5850.760611 7816.329931 1.149656932 1.029143194 0.971905958 1.043403493 0.967952156 1.171628289 0.973233262 0.798875664 0.748530405 1 12.93227565 -4.366027447 3.429199292 1.058533564 0.790813487 0.127244672 0.117683279 0.154191507 2.905155471 0.01039931 0.088820821 4.30E-05 4.366027447 -0.267720077 SDSFENPVLQQHFR ddPTM_HeLa_CUDC101_4h_R1 3 SDSFENPVLQQHFR 14 0 P12956;P12956-2;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 0 ;; ;; 145.52 0.00033505 52921300 12796.4 9865.9 8402.8 9403.3 10418.8 9947.1 9462.5 10111 9800.3 9354.4 FALSE FALSE TRUE 11296.42539 10169.85669 8857.080785 9786.807219 9650.225881 9757.37564 9827.471795 11261.99537 9396.327486 9298.759613 1.214831425 1.093678846 0.952501318 1.052485237 1.037797113 1.049320129 1.056858356 1.211128778 1.010492569 1 13.18282257 -6.977468682 24.98136284 1.104227512 1.055121417 0 0.08191201 596.4994362 661361.0452 0.015785483 0.020745589 1.05E-07 6.977468682 -0.049106094 SLRS(ph)LEEQDQETLR ddPTM_HeLa_CUDC101_4h_R1 1 SLRSLEEQDQETLR 14 1 P48681 P48681 NES Nestin 1 0 S(0.002)LRS(0.998)LEEQDQETLR 102.72 0.031249 5293900 738.91 856.45 865.1 596.02 854.64 880.21 854.87 909.42 862.11 962.44 TRUE FALSE FALSE 652.2960899 882.8362094 911.8699228 620.3282718 791.5949099 863.4214608 887.8426223 1012.944697 826.5734609 956.7153641 0.681807896 0.922778334 0.953125618 0.64839376 0.827409008 0.902485204 0.928011251 1.058773314 0.863970092 1 9.901945957 -4.365460204 1.520125598 0.844631634 1.110628667 0.281323658 0.104611767 1.192435697 2.928587102 0.019640429 0.444922967 4.31E-05 4.365460204 0.265997033 LKS(ph)EDGVEGDLGETQSR ddPTM_HeLa_CUDC101_4h_R1 3 LKSEDGVEGDLGETQSR 17 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR;LKS(1)EDGVEGDLGETQSR ;; 250.38 2.16E-55 409211000 4572.47 5466.6 5458.52 6018.33 7210.7 7190 9237.9 8991.7 4903.52 4589.49 TRUE FALSE FALSE 4036.491998 5635.019466 5753.624102 6263.783511 6678.781027 7052.862729 9594.208897 10015.27878 4701.39483 4562.191509 0.884770398 1.235156274 1.261153569 1.37297689 1.4639414 1.545937455 2.102982498 2.195278028 1.03051238 1 12.15551129 -4.364782922 0.418010424 0.930860516 3.165668959 0.934222824 0.107605943 0.798012869 0.099809283 0.030779951 0.872531812 4.32E-05 4.364782922 2.234808443 up SDTSISDFLS(ph)EEDDIVPSKK ddPTM_HeLa_CUDC101_4h_R1 2 SDTSISDFLSEEDDIVPSKK 20 1 Q4AC94;Q4AC94-2;Q4AC94-4;Q4AC94-1;Q4AC94-3 Q4AC94 C2CD3 C2 domain-containing protein 3 1 0 S(0.002)DT(0.002)S(0.002)IS(0.006)DFLS(0.989)EEDDIVPSKK;SDTSIS(0.001)DFLS(0.998)EEDDIVPSKK ; 104.81 0.00020565 7442400 4436.6 4690.4 4113.8 4285.5 4835.6 4344.4 3750.2 2909.3 4443.3 4522.8 TRUE FALSE FALSE 3916.548473 4834.905665 4336.204472 4460.281214 4478.887422 4261.537808 3894.84647 3240.482952 4260.145293 4495.898184 0.87113816 1.075403727 0.964480131 0.992077896 0.996216382 0.947872401 0.866311093 0.72076431 0.947562671 1 12.13439365 -4.364676427 2.011927354 0.958128139 0.680547107 0.700616134 0.050955908 0.322342726 1.642252496 0.009003763 0.15093177 4.32E-05 4.364676427 -0.277581032 WLNS(ph)PNTYMK ddPTM_HeLa_CUDC101_4h_R1 1 WLNSPNTYMK 10 0 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 0 WLNS(0.955)PNT(0.045)YMK 85.845 0.034757 13620000 2839.3 2016.1 1961.9 2209.6 2402.2 2413.8 1709.8 888.05 2073.1 1899.7 TRUE FALSE FALSE 2506.481558 2078.213651 2067.966248 2299.717039 2224.994492 2367.760787 1775.747559 989.1420224 1987.645941 1888.4005 1.327304011 1.100515305 1.095088806 1.217812132 1.178242906 1.253844609 0.940344783 0.523798856 1.052555292 1 10.88294905 -4.363889014 2.684574183 1.160732546 0.467410651 0.804098725 0.094460048 0.148534386 1.593894254 0.017428376 0.203330104 4.33E-05 4.363889014 -0.693321895 LDDGHLNNSLSS(ph)PVQADVYFPR ddPTM_HeLa_CUDC101_4h_R1 1 LDDGHLNNSLSSPVQADVYFPR 22 0 F8WF17;B9A055;U3KQ88;Q3ZCW2 F8WF17 LGALSL Galectin;Galectin-related protein 1 0 LDDGHLNNSLS(0.242)S(0.757)PVQADVYFPR 130.14 1.77E-07 9630600 1120.5 1044.9 890.07 658.9 1110.5 890.28 974.53 1019.5 1308.3 953.76 TRUE FALSE FALSE 989.1566886 1077.09213 938.1898765 685.77279 1028.580627 873.2993923 1012.117949 1135.555759 1254.37132 948.0869931 1.043318488 1.136068882 0.989560962 0.723322643 1.084901106 0.921117364 1.067537004 1.197733718 1.323055088 1 9.888875632 -4.363826284 3.423446357 1.004712917 1.204114691 0.090738673 0.146122698 0.286811187 5.388951852 0.014347849 0.12346887 4.33E-05 4.363826284 0.199401775 NGSMGS(ph)PVNQQPK ddPTM_HeLa_CUDC101_4h_R1 3 NGSMGSPVNQQPK 13 0 A0A0A0MRW1;A0A0A0MRW0;Q8IW50-3;Q8IW50-2;Q8IW50-4;A0A0A0MRV9;Q5T586;A0A0A0MRW2;Q5T593;A0A0A0MRW3;Q8IW50-7;Q8IW50-5;Q8IW50-6;Q8IW50 A0A0A0MRW1 FAM219A Protein FAM219A 1 0 NGS(0.007)MGS(0.993)PVNQQPK;NGSMGS(1)PVNQQPK;NGS(0.001)MGS(0.999)PVNQQPK ;; 198.87 1.42E-16 16648900 9177.9 7280.3 7323.5 7809.4 7274.3 6743.34 5319 3519.75 6997.8 7133.9 TRUE FALSE FALSE 8102.080475 7504.597414 7719.430562 8127.901087 6737.689381 6614.722025 5524.155612 3920.424113 6709.347722 7091.467246 1.142511161 1.058257361 1.088551959 1.146152243 0.950112177 0.932771991 0.778986269 0.552836808 0.946115591 1 12.79186844 -4.363621265 0.945956276 1.073623185 0.328851318 0.861808063 0.063883524 0.427101508 0.320301681 0.009892545 0.312504644 4.33E-05 4.363621265 -0.744771867 VTPRPQQTSAS(ph)SPSSVNSR ddPTM_HeLa_CUDC101_4h_R1 1 VTPRPQQTSASSPSSVNSR 19 1 Q9ULD2-2;Q9ULD2;H0YC63;Q9ULD2-5 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 VTPRPQQTS(0.004)AS(0.594)S(0.378)PS(0.017)S(0.006)VNS(0.001)R 92.551 0.0016176 17463000 1103.8 1028.6 941.56 1237.1 1286.2 1158.2 926.99 651.05 1000.1 1143.3 TRUE FALSE FALSE 974.4142373 1060.289947 992.4635817 1287.554285 1191.319588 1136.109265 962.7443148 725.1629004 958.8754547 1136.499601 0.857381944 0.932943528 0.873263467 1.13291222 1.048235818 0.999656545 0.847113641 0.638067008 0.843709451 1 10.15038146 -4.363367768 2.80899888 0.952951247 0.613964744 0.564823905 0.086350306 0.208276985 2.497749663 0.01291715 0.14233874 4.33E-05 4.363367768 -0.338986502 NNSNT(ph)CNIENELEDS(ph)RK ddPTM_HeLa_CUDC101_4h_R1 1 NNSNTCNIENELEDSRK 17 1 Q6PL18;A0A0B4J211 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 2 0 NNS(0.145)NT(0.855)CNIENELEDS(1)RK 107.75 0.0014354 3733200 3263.1 2117.4 2388.2 2405.3 2123.6 2422 1556.6 628.3 2843.9 1107.7 TRUE FALSE FALSE 2880.604365 2182.634584 2517.313316 2503.398531 1966.946259 2375.804385 1616.638583 699.8231323 2726.673238 1101.111351 2.616088156 1.982210593 2.286156903 2.273519865 1.786328201 2.157642261 1.468188101 0.635560728 2.476292008 1 10.10474466 -4.36276331 2.894005761 1.890156533 0.54671231 0.454775539 0.45546011 0.337810248 4.351792461 0.087272426 0.927183797 4.34E-05 4.36276331 -1.343444222 SNT(ph)PILVDGKDVMPEVNK ddPTM_HeLa_CUDC101_4h_R1 3 SNTPILVDGKDVMPEVNK 18 1 K7EQ48;A0A2U3TZU2;P06744;A0A0J9YXP8;A0A0J9YYH3;A0A2R8Y6C7;P06744-2;K7EP41;K7EPY4;A0A0J9YX90;K7ERC6 K7EQ48 GPI Glucose-6-phosphate isomerase 1 0 S(0.066)NT(0.934)PILVDGKDVMPEVNK;S(0.058)NT(0.942)PILVDGKDVMPEVNK;S(0.011)NT(0.989)PILVDGKDVMPEVNK ;; 102.9 0.0017101 80724000 9940 8086.9 7807.8 7914.4 8872.8 8180.6 8489.9 8764.9 8654.4 8122.2 TRUE FALSE FALSE 8774.848268 8336.047804 8229.913285 8237.183441 8218.271221 8024.568685 8817.358287 9762.660787 8297.661969 8073.888793 1.086818074 1.03246998 1.019324578 1.020225031 1.017882638 0.993891406 1.092083197 1.209164634 1.027715662 1 12.979048 -4.362480513 2.989926261 1.034076765 1.220191103 0.825012152 0.025708899 0.132030545 1.837301896 0.00498902 0.050876051 4.34E-05 4.362480513 0.186114338 GYYSPYSVS(ph)GSGS(ph)TAGSR ddPTM_HeLa_CUDC101_4h_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 GYYS(0.004)PYS(0.203)VS(0.696)GS(0.101)GS(0.655)T(0.285)AGS(0.057)R 163.34 0.0001608 56972000 4224.2 2992.1 3346.8 2997.8 3730.6 4036.9 4625.9 5574.4 2887.7 3095.5 TRUE FALSE FALSE 3729.045679 3084.283054 3527.738132 3120.063242 3455.40107 3959.902858 4804.322513 6208.967163 2768.667784 3077.087828 1.211874957 1.002338323 1.146453507 1.013966261 1.122945221 1.286899523 1.561321217 2.017806286 0.899768852 1 11.58734991 -4.361973696 1.21239174 1.090736012 2.342017521 0.922055335 0.0888468 0.237307006 0.32678537 0.012817177 0.354062367 4.35E-05 4.361973696 1.251281509 up IS(ph)DAHLADTMIGK ddPTM_HeLa_CUDC101_4h_R1 2 ISDAHLADTMIGK 13 0 Q9Y657 Q9Y657 SPIN1 Spindlin-1 1 0 IS(1)DAHLADTMIGK;IS(1)DAHLADTMIGK ; 130.95 0.0006841 63879000 27720.8 25224.9 22529.6 22949.6 25263.7 24260.8 21378.9 10790.5 26784.7 25227.7 TRUE FALSE FALSE 24471.40985 26002.04927 23747.61832 23885.58388 23400.04718 23798.06566 22203.49133 12018.8469 25680.62333 25077.64452 0.975825693 1.036861706 0.946963671 0.952465207 0.933103871 0.948975317 0.885389827 0.479265383 1.024044476 1 14.61411423 -4.014829388 1.590597926 0.982242538 3.09E-14 0.954666994 0.032444739 0.277111634 0.40036914 0.004508993 0.506762649 9.66E-05 4.014829388 -0.982242538 down GPSQEEEDNHS(ph)DEEDRASEPK ddPTM_HeLa_CUDC101_4h_R1 2 GPSQEEEDNHSDEEDRASEPK 21 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 GPSQEEEDNHS(0.999)DEEDRAS(0.001)EPK;GPSQEEEDNHS(0.999)DEEDRAS(0.001)EPK ; 82.541 0.00070769 85481000 5237.4 4354.1 4890.7 4847.9 4921.9 4033 3575.8 2104.35 5088.3 5184.7 TRUE FALSE FALSE 4623.479911 4488.24466 5155.106036 5045.618316 4558.821243 3956.077244 3713.719804 2343.900698 4878.55812 5153.861174 0.897090503 0.870850904 1.00024154 0.978997716 0.884544827 0.76759484 0.720570399 0.454785377 0.946583145 1 12.33143796 -4.01284678 0.773270008 0.951146077 4.18E-12 0.915763213 0.046308647 0.807503254 0.266810592 0.009018363 0.722649902 9.71E-05 4.01284678 -0.951146077 down GTYVPSS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 4 GTYVPSSPTR 10 0 Q9Y4P8;Q9Y4P8-4 Q9Y4P8 WIPI2 WD repeat domain phosphoinositide-interacting protein 2 1 0 GTYVPS(0.019)S(0.971)PT(0.01)R;GTYVPS(0.002)S(0.998)PTR;GTYVPS(0.002)S(0.997)PT(0.001)R;GTYVPS(0.005)S(0.959)PT(0.036)R ;;; 164.48 3.07E-05 534770000 28564.3 21249 20305.1 22358 23328.7 22701 20858.2 18781.4 20604.1 19182 TRUE FALSE FALSE 25216.03605 21903.6565 21402.85513 23269.85588 21607.78828 22268.01625 21662.70776 20919.39866 19754.79028 19067.90461 1.322433512 1.14871859 1.122454489 1.220367752 1.133202033 1.167827126 1.136082239 1.097100027 1.036023133 1 14.21885869 -4.361848916 2.62459291 1.157256585 1.091227819 0.006571743 0.085268061 1.528791056 15.46882442 0.01632805 0.197646935 4.35E-05 4.361848916 -0.066028766 SKGES(ph)DDFHMDFDSAVAPR ddPTM_HeLa_CUDC101_4h_R1 1 SKGESDDFHMDFDSAVAPR 19 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 S(0.407)KGES(0.593)DDFHMDFDSAVAPR 48.555 0.035374 9682800 4620.8 3367.1 3875 4045.9 4589.7 4460.7 3308 2034.1 4006.6 3938.1 TRUE FALSE FALSE 4079.156829 3470.83636 4084.494221 4210.90929 4251.126975 4375.61958 3435.590668 2265.653722 3841.446252 3914.676006 1.042016459 0.886621614 1.04337989 1.075672491 1.085946057 1.117747567 0.877618138 0.578758936 0.981293534 1 11.93467719 -4.361719386 2.927412479 1.026101769 0.548126033 0.826971497 0.062614009 0.092647363 1.225855135 0.008664934 0.091019062 4.35E-05 4.361719386 -0.477975736 SDTSGHFER ddPTM_HeLa_CUDC101_4h_R1 2 SDTSGHFER 9 0 P20073-2;P20073 P20073-2 ANXA7 Annexin A7 0 0 ; ; 119.22 0.0054418 2933600 3025.7 1102.9 2124.8 1852.28 2986.1 2592.8 2448.1 1046.4 3207.8 3544.3 FALSE FALSE TRUE 2671.032033 1136.879042 2239.673115 1927.823985 2765.821352 2543.34666 2542.524037 1165.517946 3075.573126 3523.218346 0.758122765 0.322681971 0.635689559 0.547176983 0.78502695 0.721881646 0.72164816 0.330810592 0.87294423 1 11.78267817 -8.100741189 1.100670751 0.95143624 0.603415974 0.425489271 0.156879093 0.269832493 0.68366597 0.042766062 0.032992037 7.93E-09 8.100741189 -0.348020266 GEVISSGSKPLS(ph)PGPCLDIPSILSNK ddPTM_HeLa_CUDC101_4h_R1 2 GEVISSGSKPLSPGPCLDIPSILSNK 26 1 Q8TEP8;K7EPA2;H0Y966;A0A0A0MR42;K7ENP4;Q8TEP8-1;C9JT09;Q8TEP8-2 Q8TEP8 CEP192 Centrosomal protein of 192 kDa 1 0 GEVIS(0.006)S(0.005)GS(0.005)KPLS(0.984)PGPCLDIPSILSNK;GEVIS(0.013)S(0.038)GS(0.038)KPLS(0.912)PGPCLDIPSILSNK ; 70.569 0.00020803 29597000 2532.1 1735.17 1763.38 1937.93 2041.6 2062.55 1646.61 1260.34 1718.88 1447.24 TRUE FALSE FALSE 2235.291076 1788.628531 1858.713657 2016.967162 1890.995235 2023.210295 1710.120299 1403.812011 1648.027039 1438.631752 1.553761811 1.243284481 1.292000996 1.402003785 1.31444008 1.406343418 1.188713023 0.975796627 1.145551693 1 10.49048164 -4.360935329 3.347459725 1.289385194 0.963406589 0.312841623 0.14311974 0.359576836 6.449283788 0.028385919 0.252736292 4.36E-05 4.360935329 -0.325978606 SLS(ph)YEEPR ddPTM_HeLa_CUDC101_4h_R1 2 SLSYEEPR 8 0 F5GZK9;Q8IZD4-2;Q8IZD4 F5GZK9 DCP1B mRNA-decapping enzyme 1B 1 0 S(0.002)LS(0.998)YEEPR;S(0.004)LS(0.995)YEEPR ; 114.86 0.0093654 160735000 10825 7730.3 7564.3 8240.5 8893.8 9952.4 11485.2 14250.8 7918.6 8261.9 TRUE FALSE FALSE 9556.10991 7968.46138 7973.248939 8576.583208 8237.722093 9762.574552 11928.18801 15873.05347 7592.191956 8212.757851 1.163568935 0.970254027 0.970836969 1.044300022 1.00303969 1.188708437 1.452397383 1.932731216 0.924438793 1 13.00365105 -4.360608171 1.477991804 1.055239822 2.177101981 0.939815109 0.072530782 0.175870647 0.399026524 0.011501566 0.272115689 4.36E-05 4.360608171 1.121862159 SDVCQHAMMLPVLTHHIRYHQCLMHLDK ddPTM_HeLa_CUDC101_4h_R1 1 SDVCQHAMMLPVLTHHIRYHQCLMHLDK 28 1 Q9NRR4;Q9NRR4-3;Q9NRR4-2;Q9NRR4-4 Q9NRR4 DROSHA Ribonuclease 3 0 0 41.087 0.023953 25301000 2259.5 2157.6 1686.6 1999.7 1758.3 1969.6 1649.9 1056.9 2037.8 2668.7 FALSE FALSE TRUE 1994.644835 2224.073099 1777.782698 2081.256409 1628.593712 1932.033162 1713.537196 1177.213224 1953.801021 2652.826454 0.751894204 0.838378664 0.670146626 0.784542994 0.613908878 0.728292331 0.645928871 0.443758099 0.736497866 1 11.37331458 -11.28581099 0.056244535 2.072971653 5.29E-12 0.416836869 0.106215199 65.8662359 0.47015803 14.03229583 5.173180749 5.18E-12 11.28581099 -2.072971653 SDVLELTDDNFESR ddPTM_HeLa_CUDC101_4h_R1 4 SDVLELTDDNFESR 14 0 H7BZJ3 H7BZJ3 PDIA3 0 0 ;;; ;;; 327.06 2.59E-166 501940000 14367.3 13166.1 12172.6 11952.3 14615.6 13439.9 13042.1 13406.3 14403.3 13545 FALSE FALSE TRUE 12683.18687 13571.73194 12830.68758 12439.76646 13537.43631 13183.5563 13545.13817 14932.419 13809.58988 13464.43374 0.941976998 1.007969009 0.952931837 0.923898227 1.005421882 0.979139306 1.005993897 1.109026885 1.025634657 1 13.71686594 -3.845617723 1.288214244 0.971463813 1.329232709 0.600666032 0.031119579 1.608371783 1.104181268 0.004313524 0.983531098 0.000142686 3.845617723 0.357768896 TYQVTPMT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 TYQVTPMTPR 10 0 Q15398-1;Q15398;Q15398-3 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 TYQVTPMT(1)PR;TYQVTPMT(1)PR ; 125.82 0.00055975 0 4221.1 3592.6 3772.9 3903.8 3788.3 4418.7 3227.8 1953.25 3496.5 4218.3 TRUE FALSE FALSE 3726.309057 3703.283748 3976.874386 4063.013838 3508.844656 4334.42066 3352.297327 2175.600085 3352.37279 4193.209364 0.888653233 0.883162138 0.948408258 0.968950864 0.836792145 1.033676185 0.799458609 0.518838888 0.799476606 1 12.03383915 -4.358862111 2.871289802 0.940032029 0.486658663 0.73524392 0.071753735 0.098636481 1.243310341 0.008414829 0.091524007 4.38E-05 4.358862111 -0.453373365 SDYDMVDYLNELR ddPTM_HeLa_CUDC101_4h_R1 5 SDYDMVDYLNELR 13 0 Q14974;Q14974-2;J3KTM9 Q14974 KPNB1 Importin subunit beta-1 0 0 ;;;; ;;;; 177.1 9.49E-07 45378500 11823.21 8694.65 8162.16 8414.48 8874.75 9700.37 8570.07 7120.03 9545.51 6218.12 FALSE FALSE TRUE 10437.31125 8962.521861 8603.431059 8757.658865 8220.077373 9515.351604 8900.620471 7930.545435 9152.040038 6181.134346 1.688575375 1.44998011 1.391885466 1.416836842 1.329865509 1.539418345 1.439965542 1.283024279 1.480640854 1 12.59365591 -9.515553285 1.270207993 1.000160895 1.468231227 0 0.180764582 0.219659788 0.634793355 0.088568485 0.021353016 3.05E-10 9.515553285 0.468070332 VDPEDTNLNQDS(ph)AK ddPTM_HeLa_CUDC101_4h_R1 1 VDPEDTNLNQDSAK 14 0 Q5F1R6;Q5F1R6-3;Q5F1R6-2;A0A2R8Y534;A0A2R8Y4Q0 Q5F1R6 DNAJC21 DnaJ homolog subfamily C member 21 1 0 VDPEDT(0.002)NLNQDS(0.998)AK 87.138 0.0032388 0 772.71 724.84 925.48 661.73 678.5 835.81 637.74 477.02 961.53 717.79 TRUE FALSE FALSE 682.1341052 747.1714613 975.5142482 688.7182096 628.4484068 819.8683168 662.3378454 531.3220286 921.8953264 713.5205532 0.956011852 1.047161792 1.367184511 0.965239483 0.880771274 1.149046532 0.928267367 0.744648527 1.292037521 1 9.478811177 -4.358027943 3.55624895 1.013046679 0.736564338 0.23038115 0.157261646 0.249742626 5.093161579 0.018196506 0.152118871 4.39E-05 4.358027943 -0.276482342 SEAHLTELLEEICDR ddPTM_HeLa_CUDC101_4h_R1 2 SEAHLTELLEEICDR 15 0 F8W1K5;F8VXJ7;F8W031;Q9Y2B0 F8W1K5 CNPY2 Protein canopy homolog 2 0 0 ; ; 182.33 1.10E-10 5725200 4269.4 1978.11 1417.53 1550.54 5779.4 3922.1 3886.1 2566.4 3779.3 1816 FALSE FALSE TRUE 3768.947404 2039.053224 1494.16596 1613.777723 5353.065176 3847.292477 4035.988179 2858.548602 3623.515654 1805.198351 2.087830072 1.129545251 0.827701819 0.893961443 2.965361215 2.131229776 2.235758844 1.583509424 2.007267319 1 10.81794165 -10.77979435 0.393765407 6.23E-149 1.823957548 0 0.701473488 11.20294645 0.938065389 10.33182655 0.207885333 1.66E-11 10.77979435 1.823957548 SVAAEGALLPQT(ph)PPSPR ddPTM_HeLa_CUDC101_4h_R1 1 SVAAEGALLPQTPPSPR 17 0 Q86X27-3;Q86X27;H7C2H2 Q86X27-3 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 SVAAEGALLPQT(0.98)PPS(0.02)PR 139.39 0.00099456 26268000 1397.8 1166.4 1008 987.72 1153.7 1285 1269.7 1423.4 1277 1061.5 TRUE FALSE FALSE 1233.952003 1202.335401 1062.495529 1028.003491 1068.593849 1260.490766 1318.672754 1585.434102 1224.361519 1055.186151 1.169416412 1.139453357 1.006927098 0.974238991 1.012706477 1.1945672 1.249706275 1.502516026 1.160327511 1 10.04328182 -4.357868066 1.37022924 1.070035397 1.627247387 0.77657454 0.071480693 0.433430783 0.807681041 0.012384838 0.315957155 4.39E-05 4.357868066 0.557211991 SRMNS(ph)LEMT(ph)PAVR ddPTM_HeLa_CUDC101_4h_R1 1 SRMNSLEMTPAVR 13 1 P09601 P09601 HMOX1 Heme oxygenase 1 2 0 S(0.001)RMNS(0.999)LEMT(1)PAVR 73.927 0.035312 12986000 2441.8 1486.8 2052.4 1725.9 1434.1 1615.2 1498.1 842.57 2154.3 2423.7 TRUE FALSE FALSE 2155.575906 1532.606546 2163.358952 1796.289662 1328.3093 1584.392751 1555.882219 938.484763 2065.498842 2409.283725 0.894695749 0.636125389 0.897926189 0.745569998 0.551329545 0.657619829 0.645786216 0.389528536 0.857308262 1 11.23438858 -4.356446013 0.196762281 1.061182873 1.48E-23 0.664718926 0.102540281 4.673618226 0.174404608 0.124363144 1.250001853 4.40E-05 4.356446013 -1.061182873 LEPSTSTDQPVT(ph)PEPTSQATR ddPTM_HeLa_CUDC101_4h_R1 4 LEPSTSTDQPVTPEPTSQATR 21 0 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 LEPSTSTDQPVT(1)PEPTSQATR;LEPSTST(0.003)DQPVT(0.997)PEPTSQATR;LEPSTSTDQPVT(1)PEPTSQATR;LEPSTSTDQPVT(0.984)PEPT(0.014)S(0.001)QATR ;;; 219.96 2.81E-34 47793000 6343.56 6267.26 5919.17 5872.63 6729.91 6954.79 5218.7 3609.45 6521.02 6243.35 TRUE FALSE FALSE 5599.977513 6460.346852 6239.178235 6112.141235 6233.457947 6822.138968 5419.987007 4020.335198 6252.220796 6206.214277 0.902317784 1.040948083 1.005311444 0.984842122 1.004389741 1.09924322 0.873316126 0.647791877 1.007412976 1 12.59949779 -4.356333954 3.350731142 0.97669317 0.633674619 0.794610073 0.05412401 0.104277255 1.877005902 0.00863204 0.077758711 4.40E-05 4.356333954 -0.343018551 EKLQEEGGGS(ph)DEEETGSPSEDGMQSAR ddPTM_HeLa_CUDC101_4h_R1 5 EKLQEEGGGSDEEETGSPSEDGMQSAR 27 1 Q13610-2;Q13610 Q13610-2 PWP1 Periodic tryptophan protein 1 homolog 1 0 EKLQEEGGGS(1)DEEETGSPSEDGMQSAR;EKLQEEGGGS(1)DEEETGSPSEDGMQSAR;EKLQEEGGGS(1)DEEETGSPSEDGMQSAR;EKLQEEGGGS(0.997)DEEET(0.002)GS(0.001)PSEDGMQSAR;EKLQEEGGGS(1)DEEETGSPSEDGMQSAR ;;;; 120.92 1.28E-10 531897000 7590.42 6990 6485.58 6042.66 7220.46 6529.35 6829.95 7195.48 7444.07 6531.28 TRUE FALSE FALSE 6700.682474 7205.353615 6836.210073 6289.105793 6687.821051 6404.813527 7093.383459 8014.584358 7137.222284 6492.431656 1.032075935 1.109808158 1.052950641 0.968682633 1.030094948 0.986504574 1.092561899 1.234450323 1.099314196 1 12.66454321 -4.35627674 2.730268191 1.021221997 1.253816027 0.633834459 0.044704815 0.136761774 1.519344967 0.005444954 0.063864509 4.40E-05 4.35627674 0.23259403 S(ph)RQPSPLLLLPPPAGLTSDPGPSVR ddPTM_HeLa_CUDC101_4h_R1 1 SRQPSPLLLLPPPAGLTSDPGPSVR 25 1 I3L2J0 I3L2J0 CIC 1 0 S(0.607)RQPS(0.393)PLLLLPPPAGLTSDPGPSVR 73.797 0.0002109 31143000 710.26 529.19 650.16 409.07 732.91 578.58 698.34 834.4 750.1 663.04 TRUE FALSE FALSE 627.0043995 545.4937167 685.3096162 425.7536428 678.8446895 567.5445505 725.2752077 929.3847232 719.1805605 659.0962086 0.951309371 0.827638984 1.039771747 0.64596585 1.029962971 0.861095153 1.100408709 1.410089621 1.091161732 1 9.364345261 -4.35614659 2.745290544 0.944432271 1.451923997 0.581913553 0.123629744 0.172823289 1.946230505 0.015155859 0.176563154 4.40E-05 4.35614659 0.507491726 MGFTEVT(ph)PVTGASLR ddPTM_HeLa_CUDC101_4h_R1 1 MGFTEVTPVTGASLR 15 0 P55265-5;P55265;P55265-4 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 0 MGFTEVT(0.712)PVT(0.287)GASLR 99.927 0.028368 6302000 1554.9 952.93 1117.1 1214.1 1346.4 1108.8 1036.8 524.19 1146.6 1625.9 TRUE FALSE FALSE 1372.636979 982.2886438 1177.493805 1263.616246 1247.078754 1087.651487 1076.789723 583.8616708 1099.336663 1616.229074 0.849283682 0.60776573 0.728543883 0.781829919 0.771597773 0.672956269 0.666235833 0.36124933 0.680186169 1 10.65841598 -4.356004763 0.129094956 1.152252843 1.50E-12 0.24311864 0.13728594 12.65160466 0.28349035 0.508289965 2.665312332 4.41E-05 4.356004763 -1.152252843 LSS(ph)SVSAMR ddPTM_HeLa_CUDC101_4h_R1 1 LSSSVSAMR 9 0 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4M5;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 LS(0.003)S(0.647)S(0.35)VS(0.001)AMR 128.35 0.0036875 9616700 1281 1163.4 1261.2 999.63 1374.6 1343.1 1334.3 1389.1 1229.7 1493.6 TRUE FALSE FALSE 1130.843122 1199.242975 1329.384287 1040.399232 1273.198497 1317.482605 1385.764398 1547.229529 1179.011246 1484.716001 0.761656183 0.807725501 0.895379511 0.700739557 0.857536725 0.887363378 0.933353178 1.042104704 0.794098834 1 10.53597128 -4.355838192 1.762912685 0.863970038 1.080614625 0.361347308 0.080560864 0.898298871 3.192707936 0.015052442 0.303751077 4.41E-05 4.355838192 0.216644587 EITALAPS(ph)TMK ddPTM_HeLa_CUDC101_4h_R1 5 EITALAPSTMK 11 0 P60709;P63267-2;A0A2R8YFE2;P63267;P68133;P68032;P62736;A6NL76;P63261 P60709;P63267;P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 EITALAPS(0.976)T(0.024)MK;EITALAPS(0.959)T(0.041)MK;EITALAPS(0.777)T(0.223)MK;EITALAPS(0.969)T(0.031)MK;EITALAPS(0.828)T(0.172)MK ;;;; 206.36 2.67E-23 587683000 31107.4 28468.2 25991.2 24656.8 28232.1 28065.3 27816.1 28456.9 22246.3 27336.6 TRUE FALSE FALSE 27461.03773 29345.2715 27396.36289 25662.41088 26149.47423 27530.00116 28888.97629 31696.31847 21329.2981 27174.00069 1.010562929 1.079902508 1.008182903 0.944373674 0.962297548 1.013100775 1.063110899 1.166420758 0.784915638 1 14.72993936 -4.354924427 2.071372319 1.003602388 1.193794101 0.337498132 0.07682271 0.255396799 1.384120295 0.004998149 0.084048489 4.42E-05 4.354924427 0.190191713 SEDDESGAGELTR ddPTM_HeLa_CUDC101_4h_R1 2 SEDDESGAGELTR 13 0 P33993;P33993-2;P33993-3 P33993 MCM7 DNA replication licensing factor MCM7 0 0 ; ; 185.99 2.80E-10 27887000 2489.8 1972.55 1917.05 2294.3 1739.59 2261.9 1798.43 1576.05 2225.6 2172.33 FALSE FALSE TRUE 2197.949418 2033.321927 2020.691522 2387.871471 1611.263911 2218.758026 1867.796048 1755.461161 2133.859826 2159.408885 1.017847724 0.94161043 0.935761419 1.105798669 0.746159712 1.027483976 0.8649571 0.812935972 0.988168494 1 11.07642073 -1.975893443 0.31846392 1.011159867 9.15E-15 0.27173401 0.087997443 22.64695539 0.51093103 0.027518015 12.03868678 0.010570768 1.975893443 -1.011159867 LTSVVT(ph)PRPFGSQTR ddPTM_HeLa_CUDC101_4h_R1 1 LTSVVTPRPFGSQTR 15 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 E9PMS6 LMO7 LIM domain only protein 7 1 0 LTSVVT(0.752)PRPFGS(0.226)QT(0.022)R 128.85 0.012151 16231000 4693.5 4239.8 3680.8 3312.7 4042.4 3427.1 2806 1665.6 4434.1 4269.1 TRUE FALSE FALSE 4143.335045 4370.423213 3879.795182 3447.806225 3744.200206 3361.733777 2914.22836 1855.205171 4251.324521 4243.707203 0.976348001 1.029859744 0.914246671 0.812451486 0.88229466 0.792169114 0.686717584 0.437166157 1.001794968 1 12.0511094 -4.010531977 0.522598836 0.99179217 6.46E-14 0.928955937 0.046224962 0.88079138 0.134774987 0.009288801 0.563700781 9.76E-05 4.010531977 -0.99179217 down SEDEAGCSSVDEESYK ddPTM_HeLa_CUDC101_4h_R1 2 SEDEAGCSSVDEESYK 16 0 Q7L4I2;Q7L4I2-2 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 0 0 ; ; 155.08 6.30E-07 0 1138.56 1249.9 997.69 1111.72 1408.71 1468.9 1041.53 878.16 1109.34 973.35 FALSE FALSE TRUE 1005.099723 1288.407938 1051.628139 1157.060747 1304.79227 1440.88318 1081.702161 978.1261848 1063.612536 967.5604709 1.038797835 1.331604562 1.086886216 1.195853677 1.348538214 1.489191863 1.117968534 1.010919952 1.099272415 1 9.91820802 -7.362530642 6.432900825 1.017189482 1.229765733 0.265923037 0.134530087 0.201727991 10.9699221 0.023311692 0.026569716 4.34E-08 7.362530642 0.212576251 S(ph)QEATEAAPSCVGDMADTPR ddPTM_HeLa_CUDC101_4h_R1 2 SQEATEAAPSCVGDMADTPR 20 0 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;Q9UHD8-3;K7ER14;K7EJL9 Q9UHD8-7 9-Sep Septin-9 1 0 S(0.991)QEATEAAPS(0.003)CVGDMADT(0.005)PR;S(0.958)QEAT(0.042)EAAPSCVGDMADTPR ; 204.21 5.14E-18 12586100 892.08 694.35 692.64 534.9 854.69 738.63 890.4 1024.23 573.71 601.52 TRUE FALSE FALSE 787.5117347 715.7421005 730.0862135 556.715534 791.6412215 724.5418634 924.7430263 1140.824203 550.061431 597.9421323 1.317036703 1.197008978 1.22099811 0.931052528 1.323942868 1.211725724 1.546542678 1.907917408 0.919924189 1 9.22386206 -4.354387079 1.321748665 1.153125565 2.165208111 0.767150601 0.137204534 0.428873422 0.726117484 0.020854068 0.554081945 4.42E-05 4.354387079 1.012082546 SSGS(ph)ETEQVVDFSDR ddPTM_HeLa_CUDC101_4h_R1 2 SSGSETEQVVDFSDR 15 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 S(0.066)S(0.221)GS(0.356)ET(0.356)EQVVDFSDR;S(0.063)S(0.24)GS(0.619)ET(0.078)EQVVDFSDR ; 201.4 1.45E-16 39658000 1518.93 1428.42 1446.62 1500.02 1726.83 1945.11 1634.46 1932.06 1777.75 1621.56 TRUE FALSE FALSE 1340.883328 1472.427927 1524.828653 1561.197299 1599.445191 1908.010268 1697.50167 2151.997901 1704.470393 1611.914889 0.8318574 0.913465058 0.945973428 0.968535814 0.992264047 1.183691695 1.05309634 1.33505678 1.057419597 1 10.65455985 -4.353627765 0.637084346 0.918238806 1.493817454 0.65838339 0.079268582 1.213293634 0.36065595 0.014188503 0.495532759 4.43E-05 4.353627765 0.575578649 GT(ph)PGPPPAHGAALQPHPR ddPTM_HeLa_CUDC101_4h_R1 3 GTPGPPPAHGAALQPHPR 18 0 Q15654 Q15654 TRIP6 Thyroid receptor-interacting protein 6 1 0 GT(1)PGPPPAHGAALQPHPR;GT(1)PGPPPAHGAALQPHPR;GT(1)PGPPPAHGAALQPHPR ;; 135.14 3.11E-05 22688700 6857.96 4793.2 6385.62 5668.03 5335.11 5188.93 4376.53 2272.16 5722.12 6802.35 TRUE FALSE FALSE 6054.080325 4940.872811 6730.845933 5899.196763 4941.549564 5089.959806 4545.334228 2530.81351 5486.251792 6761.88932 0.895323783 0.730694127 0.995409066 0.872418415 0.73079421 0.752742254 0.672198851 0.374276092 0.811348949 1 12.72321069 -4.005829491 0.450289758 0.95128877 1.97E-26 0.703007251 0.094286001 1.939214506 0.224609722 0.01969701 1.030865919 9.87E-05 4.005829491 -0.95128877 down QLSLAAT(ph)AS(ph)PPQAPSPNR ddPTM_HeLa_CUDC101_4h_R1 2 QLSLAATASPPQAPSPNR 18 0 Q8NEQ6 Q8NEQ6 C1orf64 Uncharacterized protein C1orf64 2 0 QLS(0.369)LAAT(0.859)AS(0.772)PPQAPSPNR;QLS(0.013)LAAT(0.995)AS(0.992)PPQAPSPNR ; 97.904 0.010285 108775000 4129.8 3520.2 2992 3292.8 3802 3554.7 3702.4 3951.6 3355.4 3506.3 TRUE FALSE FALSE 3645.711104 3628.65319 3153.75657 3427.094617 3521.534035 3486.90002 3845.202808 4401.434171 3217.088992 3485.444372 1.045981722 1.041087679 0.904836295 0.98325902 1.010354394 1.000417636 1.10321738 1.262804309 0.923006839 1 11.76712689 -4.353363328 2.19250609 1.010323312 1.302239234 0.756045418 0.047203015 0.180341359 1.132453008 0.005981498 0.094357564 4.43E-05 4.353363328 0.291915922 LDS(ph)PPPSPITEASEAAEAAEAGNLAVSSR ddPTM_HeLa_CUDC101_4h_R1 2 LDSPPPSPITEASEAAEAAEAGNLAVSSR 29 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 LDS(0.971)PPPS(0.027)PIT(0.001)EASEAAEAAEAGNLAVSSR;LDS(0.992)PPPS(0.008)PITEASEAAEAAEAGNLAVSSR ; 166.65 2.02E-17 65325000 2343.94 1769.1 1770.59 1813.55 2043.58 1702.49 1175.03 1482.01 2417.12 2469.3 TRUE FALSE FALSE 2069.186906 1823.603874 1866.313451 1887.514408 1892.829175 1670.01784 1220.351301 1650.716028 2317.485291 2454.612494 0.842979049 0.742929435 0.760329158 0.768966349 0.771131565 0.680359056 0.497166581 0.67249557 0.944134887 1 11.26127957 -4.352144002 0.100957222 1.234104041 1.02E-09 0.797071479 0.060658919 13.34192311 0.227664429 0.677024942 2.575199892 4.44E-05 4.352144002 -1.23410404 LPPKVESLESLYFT(ph)PIPAR ddPTM_HeLa_CUDC101_4h_R1 2 LPPKVESLESLYFTPIPAR 19 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 LPPKVESLES(0.002)LY(0.001)FT(0.997)PIPAR;LPPKVESLES(0.003)LYFT(0.997)PIPAR ; 119.16 6.93E-05 25680200 3030.1 2694 3189 2836.9 2888.9 3256 2246.8 1305.96 2669.2 2529.3 TRUE FALSE FALSE 2674.916271 2776.998947 3361.406986 2952.601044 2675.791603 3193.897225 2333.459829 1454.625208 2559.174446 2514.255611 1.063899891 1.104501442 1.33693924 1.174344021 1.064248039 1.270315242 0.928091726 0.578551044 1.01786566 1 11.29591561 -4.351949626 3.335745095 1.083982642 0.554570467 0.685136339 0.110843439 0.135329411 2.41634008 0.017082783 0.156726495 4.45E-05 4.351949626 -0.529412175 S(ph)FTPDHVVYAR ddPTM_HeLa_CUDC101_4h_R1 3 SFTPDHVVYAR 11 0 Q6NZI2;Q6NZI2-3;Q6NZI2-2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 S(1)FTPDHVVYAR;S(0.998)FT(0.002)PDHVVYAR;S(0.617)FT(0.383)PDHVVYAR ;; 158.56 0.00014908 85177000 5744.63 4702.13 4286.93 3993.7 5619.26 5074.22 3878.66 2615.3 4843.8 3833.86 TRUE FALSE FALSE 5071.25318 4846.997052 4518.694403 4156.580348 5204.738385 4977.437708 4028.261215 2913.015181 4644.136514 3811.05603 1.330668754 1.271825188 1.185680391 1.090663668 1.365694533 1.306052094 1.056993438 0.764359054 1.218595706 1 11.8959751 -4.351721604 3.192284479 1.187885774 0.740389975 0.606658908 0.109872397 0.204711302 3.308029851 0.020346804 0.19747521 4.45E-05 4.351721604 -0.447495799 SEDESVEAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 SEDESVEAKR 10 1 A0A669KBI7;Q9UMN6 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 0 1 SEDESVEAK(1)R 108.57 0.0062811 424510 0 156.18 0 134.26 82.254 0 0 0 0 0 FALSE TRUE FALSE 0 160.9917207 0 139.7357031 76.18628629 0 0 0 0 0 0 SEDFGVNEDLADSDAR ddPTM_HeLa_CUDC101_4h_R1 4 SEDFGVNEDLADSDAR 16 0 P04083 P04083 ANXA1 Annexin A1 0 0 ;;; ;;; 361.58 5.67E-245 985428000 8247 6767.7 7340.7 7029.4 7137.9 6769 6286.2 6056.03 7332.7 8022.8 FALSE FALSE TRUE 7280.299162 6976.204815 7737.560446 7316.089316 6611.351338 6639.892603 6528.66084 6745.423976 7030.443002 7975.080029 0.912881016 0.874750446 0.970217279 0.917368765 0.829001253 0.832580059 0.818632643 0.845812701 0.881551405 1 12.96128328 -1.000000034 0.057968002 1.203799921 0.248915789 0.304222116 0.048741815 122.980422 0.539325985 1.890313562 10.07381871 0.099999992 1.000000034 -0.954884132 SEDGVEGDLGETQSR ddPTM_HeLa_CUDC101_4h_R1 1 SEDGVEGDLGETQSR 15 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 182.07 6.76E-10 6488500 1252.2 1138.1 905.56 828.84 1009.8 1041.4 690.42 827.07 954.98 1049.9 FALSE FALSE TRUE 1105.419014 1173.163512 954.5173128 862.6436778 935.3090658 1021.53703 717.0497307 921.2203057 915.6153202 1043.655148 1.05918034 1.124091147 0.914590719 0.826560075 0.896185936 0.978807063 0.687056191 0.882686496 0.877315962 1 10.02742937 -6.573118572 6.145797006 1.035732704 0.855586666 0.406277012 0.090343645 0.10575997 9.032888184 0.011819162 0.016835257 2.67E-07 6.573118572 -0.180146039 LYSLLGIDLT(ph)APS(ph)NNSSPRDSPCKENK ddPTM_HeLa_CUDC101_4h_R1 1 LYSLLGIDLTAPSNNSSPRDSPCKENK 27 2 A3KN83-4;A3KN83-3;A3KN83-2;A3KN83 A3KN83-4 SBNO1 Protein strawberry notch homolog 1 2 0 LYSLLGIDLT(0.539)APS(0.599)NNS(0.253)S(0.313)PRDS(0.296)PCKENK 53.747 0.022287 15026000 2597.7 2393.5 2368 2056.4 2474.1 2749.4 2111.2 1677.1 2851.5 2311.6 TRUE FALSE FALSE 2293.201544 2467.240898 2496.021243 2140.268881 2291.590572 2696.959776 2192.629691 1868.014285 2733.959963 2297.8505 0.997976824 1.073716892 1.086241791 0.931422162 0.997275746 1.173688095 0.954209027 0.812939869 1.189790181 1 11.16606922 -4.351373283 3.95420081 1.016167096 0.809628784 0.378398759 0.084967139 0.141393686 3.596613221 0.008808337 0.066734811 4.45E-05 4.351373283 -0.206538312 NS(ph)DMHLLDLESMGK ddPTM_HeLa_CUDC101_4h_R1 2 NSDMHLLDLESMGK 14 0 Q9Y3P9;Q9Y3P9-3;Q9Y3P9-2 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 NS(1)DMHLLDLESMGK;NS(1)DMHLLDLESMGK ; 122.64 0.00083595 5480600 7907.1 6475.1 6484.5 6138.1 7476.6 7598.5 6162.8 5000.1 6818.7 6524.4 TRUE FALSE FALSE 6980.241724 6674.590156 6835.071685 6388.438249 6925.066113 7453.571272 6400.50126 5569.291173 6537.6303 6485.592579 1.076268921 1.029141142 1.053885455 0.985019976 1.067761508 1.149250617 0.986879947 0.858717396 1.008023588 1 12.66302268 -4.351323087 3.714160404 1.042794083 0.853743765 0.610302734 0.045118983 0.124289281 2.793320362 0.006549992 0.053026093 4.45E-05 4.351323087 -0.189050318 IKEEVLS(ph)ESEAENQQAGAAALAPEIVIK ddPTM_HeLa_CUDC101_4h_R1 4 IKEEVLSESEAENQQAGAAALAPEIVIK 28 1 Q9UJX5;Q9UJX5-3 Q9UJX5 ANAPC4 Anaphase-promoting complex subunit 4 1 0 IKEEVLS(0.675)ES(0.325)EAENQQAGAAALAPEIVIK;IKEEVLS(0.847)ES(0.153)EAENQQAGAAALAPEIVIK;IKEEVLS(0.869)ES(0.131)EAENQQAGAAALAPEIVIK;IKEEVLS(0.604)ES(0.396)EAENQQAGAAALAPEIVIK ;;; 96.053 7.41E-09 354237000 12060.5 9949.4 9877.4 9232.1 11673.5 10224 10445.1 10446.6 11314.1 10692.6 TRUE FALSE FALSE 10646.78647 10255.92922 10411.40212 9608.624943 10812.36916 10028.99423 10847.97101 11635.79872 10847.72801 10628.99994 1.001673397 0.964900675 0.979527912 0.904000846 1.017251785 0.943550126 1.020601286 1.094721873 1.020578424 1 13.37571824 -4.351286797 3.40844592 0.98778263 1.099392451 0.497148182 0.034660746 0.168868952 3.163866358 0.004643028 0.041560831 4.45E-05 4.351286797 0.111609821 ELEAIFGRPVVDGEEGEPHS(ph)ISPR ddPTM_HeLa_CUDC101_4h_R1 4 ELEAIFGRPVVDGEEGEPHSISPR 24 1 P36507;G5E9C7 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 0 ELEAIFGRPVVDGEEGEPHS(0.5)IS(0.5)PR;ELEAIFGRPVVDGEEGEPHS(0.5)IS(0.5)PR;ELEAIFGRPVVDGEEGEPHS(0.793)IS(0.207)PR;ELEAIFGRPVVDGEEGEPHS(0.562)IS(0.438)PR ;;; 81.345 4.06E-05 127369000 13339.97 10491.13 9574.85 10623.01 11736.29 11171.67 9448.68 7204.56 10518.71 10087.68 TRUE FALSE FALSE 11776.27894 10814.34928 10092.49535 11056.26226 10870.52727 10958.58901 9813.118753 8024.697989 10085.12432 10027.67803 1.174377448 1.078449991 1.006463842 1.102574517 1.084052284 1.092834151 0.978603294 0.800254851 1.005728773 1 13.29169996 -4.351270503 2.215219882 1.080565393 0.756780001 0.70340462 0.052447005 0.253909169 1.633198787 0.009457563 0.148515363 4.45E-05 4.351270503 -0.323785392 SEDSTKDDIDLDALAAEIEGAGAAK ddPTM_HeLa_CUDC101_4h_R1 1 SEDSTKDDIDLDALAAEIEGAGAAK 25 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 0 0 93.407 1.21E-05 3590400 2921 1983.3 2203.1 2139.5 2357.7 2950.3 2403.7 2290.5 2579.8 2748.6 FALSE FALSE TRUE 2578.604808 2044.403122 2322.20625 2226.758058 2183.777168 2894.027943 2496.411514 2551.241261 2473.459552 2732.251205 0.94376564 0.748248594 0.849924138 0.814990237 0.799259294 1.059210053 0.913683013 0.933750622 0.905282628 1 11.41587442 -7.493352527 10.98866133 0.97525301 0.874507937 0.135192354 0.083915984 0.683512009 251.445344 0.014785707 0.01631032 3.21E-08 7.493352527 -0.100745073 SLS(ph)DSESDDSK ddPTM_HeLa_CUDC101_4h_R1 6 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 SLS(0.999)DSESDDSK;S(0.002)LS(0.668)DS(0.328)ES(0.002)DDSK;SLS(0.899)DS(0.087)ES(0.014)DDSK;S(0.001)LS(0.998)DSESDDSK;S(0.362)LS(0.63)DS(0.008)ESDDSK;S(0.009)LS(0.462)DS(0.276)ES(0.253)DDSK ;;;;; 215.77 5.68E-24 3944608000 26687.2 20229.6 24342.1 24678.3 21040.6 18004.9 15959.7 10819.2 26687.9 28386.3 TRUE FALSE FALSE 23558.96687 20852.85 25658.10756 25684.78774 19488.47686 17661.48653 16575.27098 12050.814 25587.81347 28217.45703 0.834907513 0.73900529 0.909299074 0.910244595 0.690653195 0.625906385 0.587411933 0.427069455 0.906807918 1 14.78430036 -4.005134584 0.318047712 0.953262155 1.93E-19 0.826040108 0.0714409 2.69877773 0.173213747 0.032214518 1.024349957 9.88E-05 4.005134584 -0.953262155 down SEDYVDIVQGR ddPTM_HeLa_CUDC101_4h_R1 1 SEDYVDIVQGR 11 0 Q02809;Q02809-2 Q02809 PLOD1 "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1" 0 0 115.23 0.030407 6830600 1493.3 1212.9 1532.4 1449.8 1263.8 989.13 1416.2 1113.7 1616.3 1449.8 FALSE FALSE TRUE 1318.257638 1250.268011 1615.246179 1508.929111 1170.571992 970.2639933 1470.823308 1240.479106 1549.67543 1441.176525 0.914709347 0.867532873 1.120783021 1.047011996 0.812233596 0.673244378 1.020571237 0.860740572 1.075284951 1 10.49303134 -5.748052659 24.98666746 0.969980582 0.842441763 0.327315921 0.107620214 254.028293 474147.5783 0.015221309 0.030305514 1.79E-06 5.748052659 -0.127538818 SEEAHAEDSVMDHHFR ddPTM_HeLa_CUDC101_4h_R1 4 SEEAHAEDSVMDHHFR 16 0 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 0 ;;; ;;; 134.37 0.00013036 83251000 21022.7 12546.4 11708.4 10300.7 19970.4 17875.1 16596.9 14975.4 19331.9 15402.2 FALSE FALSE TRUE 18558.45097 12932.93971 12341.39152 10720.80707 18497.22338 17534.16225 17237.04799 16680.139 18535.0309 15310.58703 1.212131902 0.844705672 0.806069127 0.700221817 1.208132865 1.145231219 1.125825415 1.089451304 1.210602236 1 13.90224198 -7.272545645 24.59896551 1.100173391 0.990168945 0.137874936 0.165438163 1262.74436 2796811.54 0.031546341 0.036256925 5.34E-08 7.272545645 -0.110004446 ERS(ph)PSPPT(ph)IQSK ddPTM_HeLa_CUDC101_4h_R1 1 ERSPSPPTIQSK 12 1 Q14687-3;Q14687;Q14687-2;H0Y613;H7C3B5 Q14687-3 GSE1 Genetic suppressor element 1 2 0 ERS(1)PS(0.006)PPT(0.895)IQS(0.099)K 143.58 0.0097495 24709000 6042 5564 5512.7 5497.8 5639.4 5570 5431.6 5367.6 5448.6 5496.4 TRUE FALSE FALSE 5333.765919 5735.420245 5810.733237 5722.024048 5223.392697 5463.76153 5641.098631 5978.625887 5224.006402 5463.707168 0.976217384 1.049730534 1.063514764 1.047278683 0.956016224 1.00000995 1.032467235 1.094243469 0.956128548 1 12.41566445 -4.351018008 2.381486844 1.000747124 1.106470993 0.344063495 0.036237525 0.379327328 2.949238311 0.005269639 0.075507957 4.46E-05 4.351018008 0.105723869 MVVESAY(ph)EVIK ddPTM_HeLa_CUDC101_4h_R1 1 MVVESAYEVIK 11 0 A0A5F9ZHM4;P07195;A0A3B3IS95 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain 1 0 MVVES(0.023)AY(0.977)EVIK 125.68 0.00011949 0 930.39 1014.7 746.58 971.83 1171.7 939.58 996.45 1011.7 1092.5 1188.4 TRUE FALSE FALSE 821.3310946 1045.961704 786.9423731 1011.465428 1085.266025 921.6590769 1034.88341 1126.867839 1047.466688 1181.331344 0.695258869 0.885409254 0.666148729 0.856208068 0.918680462 0.780186763 0.87603145 0.953896504 0.886683226 1 10.20619796 -4.350983692 3.624782668 0.841836086 0.957495325 0.120426369 0.095602848 0.550281979 11.76728533 0.017156906 0.14288419 4.46E-05 4.350983692 0.115659238 IEVIEIMT(ph)DR ddPTM_HeLa_CUDC101_4h_R1 2 IEVIEIMTDR 10 0 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8VZ49;A0A2R8Y4L2;Q32P51;H0YH80;F8VYN5 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 1 0 IEVIEIMT(1)DR;IEVIEIMT(1)DR ; 128.08 0.013792 2610900 1806.54 1617.51 1149.68 1353.32 1116.92 1483.63 1557.65 1719.57 1499.15 1514.58 TRUE FALSE FALSE 1594.78012 1667.343566 1211.835178 1408.514239 1034.527037 1455.33223 1617.729082 1915.318898 1437.354402 1505.571211 1.059252534 1.107449155 0.804900605 0.935534785 0.687132584 0.966631282 1.074495229 1.272154306 0.954690414 1 10.55609523 -4.350813103 2.784117971 0.984561469 1.297367806 0.382580061 0.12072311 0.334741221 3.886086688 0.018314633 0.213552872 4.46E-05 4.350813103 0.312806337 RAQST(ph)DSLGT(ph)SGSLQSK ddPTM_HeLa_CUDC101_4h_R1 1 RAQSTDSLGTSGSLQSK 17 1 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 2 0 RAQS(0.26)T(0.728)DS(0.109)LGT(0.69)S(0.156)GS(0.041)LQS(0.016)K 127.49 0.0001939 9368700 4613.8 3194.9 4392.5 3745.2 4667.2 3829.7 4489.6 5201.5 3974.5 4375.5 TRUE FALSE FALSE 4072.977358 3293.331082 4629.971837 3897.945444 4322.909954 3756.654853 4662.765376 5793.617735 3810.669428 4349.474331 0.936429795 0.757179105 1.064489978 0.896187711 0.993892509 0.86370319 1.072029634 1.332027113 0.876121834 1 12.08662533 -4.349994943 2.962704991 0.951760949 1.360875639 0.672933494 0.085403517 0.136787058 1.85064647 0.010912121 0.11745322 4.47E-05 4.349994943 0.40911469 TNSS(ph)SSSPVVLK ddPTM_HeLa_CUDC101_4h_R1 1 TNSSSSSPVVLK 12 0 E9PMC9;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7;Q7Z589-2 E9PMC9 C11orf30;EMSY Protein EMSY 1 0 T(0.297)NS(0.099)S(0.587)S(0.002)S(0.004)S(0.011)PVVLK 157.09 0.00017062 68736000 3293.7 2543.8 3050.9 2622.5 2992.7 2863.8 3000.1 3229.4 3052.1 2901.4 TRUE FALSE FALSE 2907.617479 2622.171463 3215.840882 2729.456885 2771.934483 2809.177786 3115.814862 3597.021842 2926.291146 2884.142344 1.008139382 0.909168533 1.115007687 0.946366913 0.961094895 0.974008024 1.080326312 1.247172093 1.014613981 1 11.49392665 -4.349989164 2.53511369 0.996478154 1.276173992 0.69428925 0.051814776 0.160384083 1.46518877 0.006596873 0.08743547 4.47E-05 4.349989164 0.279695839 KVTPIDS(ph)PPVWS(ph)PEGYMALQSK ddPTM_HeLa_CUDC101_4h_R1 1 KVTPIDSPPVWSPEGYMALQSK 22 1 Q5JSZ5;Q5JSZ5-5 Q5JSZ5 PRRC2B Protein PRRC2B 2 0 KVT(0.272)PIDS(0.78)PPVWS(0.7)PEGY(0.248)MALQSK 52.96 0.018104 10062000 1651.7 1759.6 1462 1730.1 2033.2 1648.4 1467.5 1185.6 1772.1 1664.2 TRUE FALSE FALSE 1458.09023 1813.81119 1541.040142 1800.660956 1883.214887 1616.959516 1524.101967 1320.563912 1699.053288 1654.301264 0.881393408 1.096421329 0.931535371 1.088472212 1.13837481 0.97742748 0.921296501 0.798260837 1.027051919 1 10.69200627 -4.349237355 2.575294626 0.978553472 0.77866888 0.347063673 0.081290957 0.429132665 4.079151948 0.012958055 0.168694003 4.47E-05 4.349237355 -0.199884592 STLNPQWNES(ph)FTFK ddPTM_HeLa_CUDC101_4h_R1 2 STLNPQWNESFTFK 14 0 J3KRN5;P17252 J3KRN5 PRKCA Protein kinase C alpha type 1 0 STLNPQWNES(0.997)FT(0.003)FK;STLNPQWNES(0.988)FT(0.012)FK ; 277 2.96E-86 189331000 9269.4 6786.9 6310.7 6738.7 8443.3 8037.3 8406.4 8962.3 5928.9 6792.5 TRUE FALSE FALSE 8182.854983 6995.996345 6651.875531 7013.533313 7820.45458 7884.001894 8730.637664 9982.532005 5684.508233 6752.097908 1.211898153 1.036121875 0.985156854 1.038719137 1.158225886 1.167637377 1.293025928 1.478434131 0.841887708 1 12.72112011 -4.348669641 1.099607856 1.085439269 1.634650308 0.657209507 0.10041466 0.68402794 0.727422762 0.013671401 0.418235134 4.48E-05 4.348669641 0.549211038 TS(ph)PENVQDR ddPTM_HeLa_CUDC101_4h_R1 2 TSPENVQDR 9 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 T(0.019)S(0.981)PENVQDR;T(0.021)S(0.979)PENVQDR ; 222.2 1.56E-31 329290000 16780.2 12901.5 12880.5 14301.7 12991.2 13074.6 12566.2 10068.1 14192.2 13391.9 TRUE FALSE FALSE 14813.25039 13298.97992 13576.85879 14884.98514 12032.86506 12825.22379 13050.88254 11214.21181 13607.19151 13312.24438 1.11275379 0.999003589 1.01987752 1.118142419 0.903894543 0.963415591 0.980366809 0.842398283 1.022156078 1 13.7004662 -4.348655286 0.59312907 1.051148753 0.765128994 0.480118588 0.057326106 2.144282542 0.54308543 0.011730476 0.409669093 4.48E-05 4.348655286 -0.286019759 SSSSS(ph)QESLNRPFSSK ddPTM_HeLa_CUDC101_4h_R1 3 SSSSSQESLNRPFSSK 16 1 E3W994;J3KR49;O75122;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 SSSS(0.002)S(0.998)QESLNRPFSSK;S(0.005)S(0.005)S(0.017)S(0.063)S(0.909)QESLNRPFSSK;SSS(0.002)S(0.008)S(0.923)QES(0.066)LNRPFSSK ;; 264.52 2.62E-100 183735000 12522.7 9727.5 9794.1 10694.8 10913.9 9986.3 8833.8 7857 11192.3 10840.4 TRUE FALSE FALSE 11054.80809 10027.19275 10323.59867 11130.98017 10108.80334 9795.827966 9174.522625 8751.409121 10730.94866 10775.92082 1.025880598 0.930518414 0.958024734 1.032949328 0.938091836 0.909047879 0.851391058 0.812126339 0.995826606 1 13.39552353 -4.348468079 0.556138207 1.008357352 0.676009807 0.78999149 0.0317567 1.05208661 0.232090076 0.006425184 0.220833725 4.48E-05 4.348468079 -0.332347544 GS(ph)PTGGAQLLK ddPTM_HeLa_CUDC101_4h_R1 2 GSPTGGAQLLK 11 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 GS(0.999)PT(0.001)GGAQLLK;GS(1)PTGGAQLLK ; 177.16 3.06E-07 176510000 9378.8 7370.7 7165.9 8199.4 7635.3 7023.3 5672.5 3509.1 7171 8130.8 TRUE FALSE FALSE 8279.431281 7597.782531 7553.31023 8533.806973 7072.059131 6889.342254 5891.290225 3908.56176 6875.408345 8082.43764 1.024373048 0.940036022 0.934533685 1.055845693 0.874990869 0.852384214 0.728900177 0.483586999 0.85066024 1 12.98057476 -4.004184511 0.710720551 1.005376498 1.81E-21 0.833414549 0.065056848 0.621982412 0.172117104 0.006993026 0.544226052 9.90E-05 4.004184511 -1.005376498 down S(ph)PPAPGLQPMR ddPTM_HeLa_CUDC101_4h_R1 4 SPPAPGLQPMR 11 0 P15408;P15408-3;P15408-2;C9JCN8 P15408 FOSL2 Fos-related antigen 2 1 0 S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR;S(1)PPAPGLQPMR ;;; 108.98 0.0072848 481512000 886.34 873.42 580.37 756.28 1149.07 758.7 874.93 951.482 752.25 923.619 TRUE FALSE FALSE 782.4445688 900.3290349 611.7465577 787.1243673 1064.305395 744.2290616 908.6763432 1059.794865 721.2419366 918.1252731 0.852219835 0.980616765 0.66629966 0.857316959 1.159215879 0.810596422 0.989708452 1.154303117 0.785559398 1 9.842547205 -4.348036888 3.421306215 0.91786509 1.165178615 0.259783577 0.130387486 0.28060916 5.313978426 0.017135329 0.154140792 4.49E-05 4.348036888 0.247313525 SEEWADNHLPLTDAELAR ddPTM_HeLa_CUDC101_4h_R1 1 SEEWADNHLPLTDAELAR 18 0 O60664-4;O60664-3;O60664;O60664-2;K7ERZ3 O60664-4 PLIN3 Perilipin-3 0 0 81.606 0.0077931 11188000 3439.1 2719.8 2647.8 2230.9 3091.9 2966 2773.2 2908.8 3147.3 3175.7 FALSE FALSE TRUE 3035.973911 2803.593814 2790.948077 2321.885745 2863.816697 2909.428492 2880.163253 3239.926034 3017.566962 3156.810795 0.961721848 0.88810955 0.884103691 0.735516284 0.907186678 0.921635372 0.912364864 1.026328863 0.955890979 1 11.62425208 -7.418276161 2.356140995 0.985184822 0.891380547 0.205503917 0.067468724 0.287800807 3.049305885 0.012710894 0.014244478 3.82E-08 7.418276161 -0.093804275 T(ph)SSSETEEKKPEKPLILQSLGPK ddPTM_HeLa_CUDC101_4h_R1 1 TSSSETEEKKPEKPLILQSLGPK 23 3 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 0 T(0.531)S(0.107)S(0.153)S(0.1)ET(0.107)EEKKPEKPLILQSLGPK 49.559 0.027279 115070000 2461.8 2470.7 2521.5 2232.7 2574.6 2480.7 2103.6 1650.1 1998.2 2393.6 TRUE FALSE FALSE 2173.231536 2546.819338 2657.819917 2323.759157 2384.676887 2433.384781 2184.736557 1837.940714 1915.83335 2379.362761 0.913367046 1.07037875 1.11703014 0.976630884 1.002233424 1.022704407 0.918202383 0.772450819 0.805187583 1 11.21635953 -4.346342384 2.839966052 0.985130075 0.753491317 0.399213258 0.080363388 0.227925687 2.771259392 0.009467388 0.109288849 4.50E-05 4.346342384 -0.231638758 RNS(ph)CNVGGGGGGFK ddPTM_HeLa_CUDC101_4h_R1 2 RNSCNVGGGGGGFK 14 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 RNS(1)CNVGGGGGGFK;RNS(1)CNVGGGGGGFK ; 99.663 0.0042113 15733900 6183 5014.5 5289.6 5481.6 6577.8 6130.2 6668.5 5991 5809.1 5059.1 TRUE FALSE FALSE 5458.238113 5168.990801 5575.571776 5705.163341 6092.568799 6013.276649 6925.706279 6672.991224 5569.646439 5029.008248 1.085350797 1.027835022 1.10868217 1.134450981 1.211485147 1.195718192 1.377151505 1.326900036 1.107503938 1 12.2960582 -4.346184903 0.352703945 1.018664734 1.63453732 0.838607015 0.046427536 1.220909721 0.110506909 0.012998559 0.316733229 4.51E-05 4.346184903 0.615872586 T(ph)SPPGGELSPGAGR ddPTM_HeLa_CUDC101_4h_R1 1 TSPPGGELSPGAGR 14 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 T(0.969)S(0.031)PPGGELSPGAGR 108.23 0.01932 174760000 2200.7 2163.4 2363.2 1718.4 2518.9 1912.6 2267.3 2656.9 2562.9 2138 TRUE FALSE FALSE 1942.737282 2230.05179 2490.96174 1788.48378 2333.085765 1876.120342 2354.75052 2959.350756 2457.256177 2125.283081 0.914107537 1.049296355 1.172061154 0.841527322 1.097776473 0.882762564 1.107970294 1.392450155 1.156201825 1 11.0534393 -4.346096197 2.909898817 0.977620205 1.427277585 0.487776052 0.110918535 0.150923523 1.949499535 0.012707026 0.142084374 4.51E-05 4.346096197 0.449657379 SEGGGTGESSQGGTSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 SEGGGTGESSQGGTSKR 17 1 F5H0R1;Q9H6E5 F5H0R1 TUT1 Speckle targeted PIP5K1A-regulated poly(A) polymerase 0 1 SEGGGTGESSQGGTSK(1)R 184 1.61E-11 551050 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 GTVPDDAVEALADS(ph)LGKK ddPTM_HeLa_CUDC101_4h_R1 2 GTVPDDAVEALADSLGKK 18 1 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;P20810-2;E9PCH5;P20810-3;H0Y7F0;E7EQ12;E7EQA0;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;E7EVY3 CAST Calpastatin 1 0 GTVPDDAVEALADS(1)LGKK;GTVPDDAVEALADS(1)LGKK ; 151.01 3.23E-05 64162000 6011.1 4897.3 5590.2 5424.8 6054.8 5826.7 6821.8 8399.1 5336.2 6683.3 TRUE FALSE FALSE 5306.48797 5048.180008 5892.423121 5646.046792 5608.149467 5715.565405 7084.919111 9355.219594 5116.239577 6643.547434 0.798743145 0.759862116 0.886939271 0.849854215 0.844149834 0.860318296 1.066436144 1.408166298 0.770106578 1 12.69773808 -4.345735586 2.250711152 0.880602485 1.489984224 0.849028567 0.072075337 0.178294419 1.186150733 0.012647958 0.199081189 4.51E-05 4.345735586 0.60938174 SSENVLDEEGGRS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SSENVLDEEGGRSPR 15 1 O60307 O60307 MAST3 Microtubule-associated serine/threonine-protein kinase 3 1 0 SSENVLDEEGGRS(1)PR 58.246 0.040645 9169000 1542.7 1273.6 1330.9 1468.9 1958.1 1255.6 1334.1 1050.3 1329.1 1492.3 TRUE FALSE FALSE 1361.867045 1312.838106 1402.85248 1528.808091 1813.654864 1231.651522 1385.556684 1169.861907 1274.313935 1483.423733 0.918056665 0.885005462 0.945685611 1.030594332 1.222614162 0.830276269 0.934026235 0.788622887 0.859035694 1 10.53471504 -4.345632659 1.583675848 0.971376079 0.75254278 0.201345344 0.104503489 1.055749873 2.797096224 0.014415011 0.337479027 4.51E-05 4.345632659 -0.218833299 SEGVVAVLLTK ddPTM_HeLa_CUDC101_4h_R1 1 SEGVVAVLLTK 11 0 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 120.06 0.0066231 0 67.708 72.947 150.14 0 124.6 208.84 0 57.012 170.43 0 FALSE FALSE TRUE 59.77137088 75.19441061 158.2570225 0 115.4085062 204.856725 0 63.50201563 163.4048033 0 0 KQS(ph)LGELIGTLNAAK ddPTM_HeLa_CUDC101_4h_R1 2 KQSLGELIGTLNAAK 15 1 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 1 0 KQS(1)LGELIGTLNAAK;KQS(1)LGELIGTLNAAK ; 146.15 0.00016222 505450000 16078.6 14351.6 13477.1 13435.3 15109.9 13543.4 14208.8 14748.9 13053.4 13931.1 TRUE FALSE FALSE 14193.89088 14793.75579 14205.71279 13983.24961 13995.27278 13285.08221 14756.83818 16427.85516 12515.33333 13848.2372 1.024960122 1.06827718 1.025813798 1.009749429 1.010617639 0.959333814 1.06561131 1.186277714 0.903749203 1 13.75741472 -4.345094296 3.238809146 1.01395841 1.196498486 0.618963444 0.043477691 0.090567246 1.515226575 0.003721408 0.036221166 4.52E-05 4.345094296 0.182540075 SEIDLLDIR ddPTM_HeLa_CUDC101_4h_R1 2 SEIDLLDIR 9 0 D6RA82;P12429 D6RA82 ANXA3 Annexin;Annexin A3 0 0 ; ; 146.79 0.0058448 19880100 12839.1 10441.1 9759.4 9163.7 11585.5 11093.9 10866.8 11298.2 10879.1 12122.8 FALSE FALSE TRUE 11334.12016 10762.77792 10287.02268 9537.435295 10730.86075 10882.30234 11285.93612 12584.34142 10430.65889 12050.69305 0.94053679 0.893125223 0.853645732 0.791442887 0.890476648 0.903043692 0.936538345 1.044283625 0.865565064 1 13.5568285 -7.941346003 1.139363548 0.986019009 0.898083983 0 0.071991679 0.428949361 1.169887745 0.016428809 0.013931941 1.14E-08 7.941346003 -0.087935026 SEIDMNDIK ddPTM_HeLa_CUDC101_4h_R1 2 SEIDMNDIK 9 0 P04083 P04083 ANXA1 Annexin A1 0 0 ; ; 152.34 0.0022963 22859000 3893.4 3688.5 3782.7 3817.9 4876 4353 3837.7 3830.1 4339.6 4145.9 FALSE FALSE TRUE 3437.021554 3802.138313 3987.204204 3973.610464 4516.307194 4269.973778 3985.721375 4266.103102 4160.719851 4121.240002 0.833977529 0.922571437 0.967476828 0.964178369 1.095861244 1.036089569 0.967117026 1.035150367 1.009579604 1 12.00886277 -6.242278126 2.036490084 0.920585431 1.027367289 0.288602688 0.057191267 0.293725814 2.376720124 0.01109228 0.019497732 5.72E-07 6.242278126 0.106781858 SEK(ac)AAPR ddPTM_HeLa_CUDC101_4h_R1 1 SEKAAPR 7 1 Q92917 Q92917 GPKOW G patch domain and KOW motifs-containing protein 0 1 SEK(1)AAPR 93.429 0.027832 358650 325.11 287.56 591.06 684.56 259.88 424.73 462.25 249.61 304.48 487.98 FALSE TRUE FALSE 287.0010986 296.4193828 623.0144915 712.4793157 240.7091702 416.6289829 480.0791373 278.0245934 291.9292055 485.0774733 0.591660332 0.611076373 1.2843608 1.468794894 0.4962283 0.858891633 0.989695799 0.573155029 0.601819754 1 8.922071373 -4.242421601 22.73826501 0.858273012 0.573154259 0.080080165 0.303427062 2741.319718 3277425.802 0.043136705 1.744687074 5.72E-05 4.242421601 -0.285118753 SEK(ac)EMDPEYEEK ddPTM_HeLa_CUDC101_4h_R1 1 SEKEMDPEYEEK 12 1 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 A0A0A0MRP6 SMARCA1 Probable global transcription activator SNF2L1 0 1 SEK(1)EMDPEYEEK 111.79 0.0076483 457780 248.59 186.75 223 209.4 133.67 200.64 182.71 0 251.98 168.91 FALSE TRUE FALSE 219.450657 192.5035461 235.0560545 217.9402371 123.8094304 196.8131263 189.7571859 0 241.5932777 167.9053158 1.306990526 1.146500605 1.399932178 1.297994861 0.737376478 1.172167333 1.130144004 0 1.438866164 1 7.391504096 -4.263384686 7.896811284 1.149222881 1.43E-12 0.763392962 0.196560485 0.031683195 23.58234384 0.025917931 0.199019187 5.45E-05 4.263384686 -1.149222881 APS(ph)IDGKEELDLAEK ddPTM_HeLa_CUDC101_4h_R1 1 APSIDGKEELDLAEK 15 1 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;B5MCW3;Q9H0E9-3;Q9H0E9;H0YAH7;H0YA84 H7C128 BRD8 Bromodomain-containing protein 8 1 0 APS(1)IDGKEELDLAEK 58.712 0.03987 10085000 1469 1188.4 1277.2 1388.6 1504.9 1098.2 1482.4 1743.5 1481.8 1519.2 TRUE FALSE FALSE 1296.806047 1225.013195 1346.249295 1445.23311 1393.886525 1077.253665 1539.576665 1941.972993 1420.719577 1510.163731 0.85871884 0.81117906 0.891459163 0.957004251 0.923003577 0.713335675 1.019476652 1.285935394 0.940771883 1 10.56048926 -4.344870114 3.623679703 0.908462268 1.299800522 0.688611442 0.080304925 0.118026145 2.545249908 0.012400836 0.105035743 4.52E-05 4.344870114 0.391338254 KQPPVS(ph)PGTALVGSQK ddPTM_HeLa_CUDC101_4h_R1 2 KQPPVSPGTALVGSQK 16 1 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 KQPPVS(0.985)PGT(0.015)ALVGSQK;KQPPVS(0.995)PGT(0.005)ALVGSQK ; 142.94 0.00059011 415638000 12466.7 9713.4 9986 10045.5 9549.3 9296.1 7956.6 2361.87 10142.5 13463.5 TRUE FALSE FALSE 11005.37232 10012.65834 10525.87337 10455.19891 8844.867164 9118.792381 8263.488727 2630.735734 9724.421857 13383.4185 0.822313994 0.748139075 0.786486155 0.781205408 0.660882506 0.681350014 0.617442302 0.196566799 0.72660224 1 13.70815905 -4.34484951 0.289025894 0.96400622 2.38E-24 0.645892381 0.116632794 2.653050867 0.171681397 0.048209022 0.900798789 4.52E-05 4.34484951 -0.96400622 SELEDFELDK ddPTM_HeLa_CUDC101_4h_R1 2 SELEDFELDK 10 0 H3BP78;Q9NVI1-2;Q9NVI1-1;Q9NVI1;F8W7R3 H3BP78 FANCI Fanconi anemia group I protein 0 0 ; ; 150.61 0.002477 15616000 2622 2038.93 1964.62 1685.54 2285 2415.3 2105.57 1679.37 2046.17 2550.8 FALSE FALSE TRUE 2314.653135 2101.747017 2070.8333 1754.283607 2116.440102 2369.232177 2186.78254 1870.542693 1961.826007 2535.627728 0.912852115 0.828886273 0.816694532 0.691853771 0.834680927 0.934376979 0.862422554 0.73770399 0.773704272 1 11.30812723 -7.66645171 1.065301162 0.977625064 0.815518562 0 0.090450398 0.260538137 0.612878281 0.016180882 0.015687471 2.16E-08 7.66645171 -0.162106502 SELESGK(ac)FLPR ddPTM_HeLa_CUDC101_4h_R1 2 SELESGKFLPR 11 1 Q92628 Q92628 KIAA0232 Uncharacterized protein KIAA0232 0 1 ; SELESGK(1)FLPR;SELESGK(1)FLPR 91.658 0.020598 778170 616.74 468.76 245.98 273.07 582.17 445.73 505.64 488.36 668.45 479.41 FALSE TRUE FALSE 544.4466721 483.20194 259.2784228 284.2069749 539.2244789 437.2284429 525.1427042 543.9529284 640.8962081 476.558448 1.14245519 1.013940561 0.544064267 0.596373805 1.131497052 0.917470763 1.101948158 1.141419128 1.344842822 1 8.896509356 -6.987017117 24.99120839 1.067845664 0.900150615 0.187019804 0.214179547 376.7015349 725123.315 0.033878871 0.04451129 1.03E-07 6.987017117 -0.167695048 DFS(ph)PLQTQTFNR ddPTM_HeLa_CUDC101_4h_R1 2 DFSPLQTQTFNR 12 0 Q6P4F7-3;Q6P4F7 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 DFS(1)PLQTQTFNR;DFS(0.997)PLQT(0.001)QT(0.002)FNR ; 180.3 4.49E-08 29382000 3553.2 2860.9 2616.9 2510.1 2797.5 2632.8 2052.64 1160.39 2790 3150.2 TRUE FALSE FALSE 3136.699282 2949.040938 2758.37753 2612.472728 2591.133998 2582.583727 2131.811012 1292.484107 2674.995019 3131.46247 1.001672321 0.941745579 0.880859201 0.834266019 0.827451717 0.824721277 0.680771695 0.412741369 0.854231863 1 11.61262087 -4.001434812 0.457484988 1.000550768 6.91E-19 0.833498597 0.067084294 1.099794891 0.13072649 0.011642812 0.625042452 9.97E-05 4.001434812 -1.000550768 down LSES(ph)QLSFR ddPTM_HeLa_CUDC101_4h_R1 1 LSESQLSFR 9 0 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 LS(0.006)ES(0.994)QLSFR 92.792 0.024737 6171000 745.39 619.42 689.97 775.54 777.31 760.51 846.17 983.26 899.53 839.14 TRUE FALSE FALSE 658.0165141 638.503596 727.2718652 807.1698734 719.9693899 746.0045388 878.8070603 1095.190344 862.4509927 834.148758 0.788847922 0.76545531 0.871873102 0.967656986 0.863118698 0.894330336 1.053537576 1.312943685 1.033929481 1 9.704160879 -4.344541419 1.913108048 0.887581597 1.40224456 0.709283536 0.081559948 0.296403803 1.28214442 0.013147865 0.253173466 4.52E-05 4.344541419 0.514662963 SELPDSIESALQGDER ddPTM_HeLa_CUDC101_4h_R1 1 SELPDSIESALQGDER 16 0 A0A087X2H1;Q9ULT8;G3V4V5;A0A087WVU6 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 0 0 196.11 1.74E-15 3548000 1117.5 1061.5 1122.8 975.4 1238.7 895.4 899.01 1136.6 1000.6 1055.5 FALSE FALSE TRUE 986.508344 1094.203557 1183.501964 1015.181028 1147.323569 878.3217368 933.6851168 1265.98595 959.3548445 1049.221839 0.940228565 1.042871504 1.127980681 0.967556136 1.093499512 0.837117285 0.889883418 1.206595119 0.91434891 1 10.03510403 -8.254746389 0.00427152 9.78E-08 1.974136504 0.027797436 0.108109398 59902.04069 121.8361567 28396.90505 27907.79592 5.56E-09 8.254746389 1.974136406 RTADSSSS(ph)EDEEEYVVEK ddPTM_HeLa_CUDC101_4h_R1 2 RTADSSSSEDEEEYVVEK 18 1 P45973;F8VNY3 P45973 CBX5 Chromobox protein homolog 5 1 0 RT(0.009)ADS(0.001)S(0.005)S(0.161)S(0.824)EDEEEYVVEK;RT(0.001)ADSSS(0.065)S(0.933)EDEEEYVVEK ; 121.65 4.68E-05 38250000 11151.7 10057 9917.4 9783.8 10804.3 8358.3 7908.8 4328.1 10167.9 10326.4 TRUE FALSE FALSE 9844.514631 10366.84425 10453.56464 10182.82565 10007.28831 8198.879353 8213.845065 4820.793409 9748.774858 10264.97811 0.959039028 1.009923658 1.018371839 0.991996821 0.974896215 0.79872351 0.800181449 0.46963504 0.949712191 1 13.32544293 -4.001211174 0.890181775 0.987481378 1.68E-18 0.938419668 0.040127621 0.501723548 0.21727087 0.005975003 0.535968084 9.97E-05 4.001211174 -0.987481378 down SEMEVQDAELK ddPTM_HeLa_CUDC101_4h_R1 4 SEMEVQDAELK 11 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 0 ;;; ;;; 192.44 3.21E-15 55971500 10978.3 9816.3 9439.2 9360.4 9406.7 9103 8541.5 8806.2 9930.3 10038.9 FALSE FALSE TRUE 9691.440316 10118.72857 9949.511704 9742.157571 8712.786482 8929.375442 8870.948516 9808.662212 9520.968831 9979.188176 0.971165203 1.013983141 0.997026164 0.976247506 0.87309572 0.894799786 0.888944908 0.98291184 0.954082503 1 13.28470674 -5.87149662 6.27544071 0.989114594 0.907658304 0.583838442 0.031244731 0.0997911 5.18027516 0.004264908 0.007801093 1.34E-06 5.87149662 -0.08145629 SSDPLDSGTRS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SSDPLDSGTRSPK 13 1 A0A1W2PR85;O15056-2;O15056;E7ER60 A0A1W2PR85 SYNJ2 Synaptojanin-2 1 0 SSDPLDS(0.001)GT(0.038)RS(0.961)PK;SSDPLDS(0.014)GT(0.201)RS(0.785)PK ; 72.315 0.026649 36294000 13777.9 12084.4 12444.6 13413.8 14080.5 12230.9 11216.4 9248.6 13012.4 12087.1 TRUE FALSE FALSE 12162.87545 12456.70604 13117.39272 13960.87274 13041.80957 11997.61596 11649.02031 10301.42324 12476.02336 12015.20539 1.012290265 1.03674516 1.091732708 1.161933757 1.085442083 0.998536069 0.969523194 0.857365555 1.0383529 1 13.55257369 -4.34396029 1.837406488 1.031093806 0.82078836 0.568599532 0.050808083 0.520142397 2.021953597 0.008758778 0.176915409 4.53E-05 4.34396029 -0.210305446 QLS(ph)LEGSGLGVEDLKDNTPSGK ddPTM_HeLa_CUDC101_4h_R1 1 QLSLEGSGLGVEDLKDNTPSGK 22 1 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-6 SYNRG Synergin gamma 1 0 QLS(0.985)LEGS(0.015)GLGVEDLKDNTPSGK 114.71 4.47E-06 57823000 1968 1410.6 1609 1694.5 1642.6 2071.7 2531.7 3411.7 1577.1 1787.2 TRUE FALSE FALSE 1737.314023 1454.058914 1695.987407 1763.609034 1521.428671 2032.185774 2629.348517 3800.074137 1512.09127 1776.569655 0.977903691 0.818464342 0.954641661 0.992704693 0.8563856 1.143881845 1.480014313 2.138995297 0.851129741 1 10.79487854 -4.343908938 1.488096109 0.965419089 2.484041195 0.961729231 0.075243729 0.119002359 0.268087256 0.010131834 0.252893515 4.53E-05 4.343908938 1.518622106 up NAS(ph)VPNLR ddPTM_HeLa_CUDC101_4h_R1 2 NASVPNLR 8 0 E9PPF9;E9PLD2;Q9H019-3;Q9H019;E9PNJ0;E9PPQ0;E9PRW1;E9PSD6;C9JF50;E9PLU1;E9PRK5;Q9H019-2 E9PPF9 MTFR1L Mitochondrial fission regulator 1-like 1 0 NAS(1)VPNLR;NAS(1)VPNLR ; 99.973 0.018867 538010000 5871.4 4342.1 4774.3 4433 4488.5 4479.3 5126.8 5994.5 4284.8 4500.3 TRUE FALSE FALSE 5183.163392 4475.874954 5032.413099 4613.796901 4157.392297 4393.864816 5324.542393 6676.889649 4108.17873 4473.532015 1.158628881 1.000523734 1.12493061 1.031354394 0.929331071 0.982191432 1.190232321 1.492531992 0.918330017 1 12.12719863 -4.343595518 2.892230915 1.056511256 1.530282394 0.755962795 0.080257194 0.131106797 1.665495056 0.011435775 0.130128833 4.53E-05 4.343595518 0.473771138 SLS(ph)FEMQQDELIEKPMSPMQYAR ddPTM_HeLa_CUDC101_4h_R1 4 SLSFEMQQDELIEKPMSPMQYAR 23 1 Q9Y6Y0 Q9Y6Y0 IVNS1ABP Influenza virus NS1A-binding protein 1 0 S(0.01)LS(0.99)FEMQQDELIEKPMSPMQYAR;S(0.025)LS(0.974)FEMQQDELIEKPMS(0.001)PMQYAR;S(0.09)LS(0.909)FEMQQDELIEKPMS(0.001)PMQYAR;S(0.205)LS(0.795)FEMQQDELIEKPMSPMQYAR ;;; 80.172 0.00033448 156462000 2699.4 2861.25 1846.59 2262.46 2745.77 3004.62 2978.53 3439.68 2693.7 2690.66 TRUE FALSE FALSE 2382.980424 2949.401721 1946.422241 2354.732898 2543.220017 2947.31188 3093.4129 3831.239268 2582.664546 2674.655835 0.890948433 1.102721959 0.727728112 0.880387251 0.950858793 1.101940609 1.156564841 1.432423274 0.965606308 1 11.38513755 -4.343555127 1.12919666 0.937485888 1.612273255 0.731237306 0.094461179 0.573426872 0.646814931 0.014402618 0.440774733 4.53E-05 4.343555127 0.674787367 SEPDKADPFSFEGPEIVDCDGCTIDWK ddPTM_HeLa_CUDC101_4h_R1 1 SEPDKADPFSFEGPEIVDCDGCTIDWK 27 1 Q99733;Q99733-2;C9JZI7;E9PP22;H0YCI4 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 0 0 102.27 1.09E-06 3159700 1432.1 1215.1 1271.9 1398.7 1263.9 1489.4 1549.7 1168.8 1452 332.5 FALSE FALSE TRUE 1264.231409 1252.535791 1340.662761 1455.745032 1170.664615 1460.992177 1609.472448 1301.851468 1392.147945 330.5222752 3.824950703 3.789565438 4.056194883 4.404377983 3.541862993 4.420253296 4.86948254 3.938770743 4.211964064 1 8.368603694 -9.284352616 0.411936666 6.67E-16 4.346689032 0 1.058819057 0.390694059 0.086147206 0.742378418 0.108219255 5.20E-10 9.284352616 4.346689032 AALSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 AALSSPR 7 0 Q68E01-4;Q68E01-3;Q68E01-2;Q68E01 Q68E01-4 INTS3 Integrator complex subunit 3 1 0 AALS(0.027)S(0.973)PR 86.833 0.03704 7924400 4920.3 2542.7 3665.4 4834.7 3220.3 2747.7 2684.2 1302.8 4421.8 4550.8 TRUE FALSE FALSE 4343.549893 2621.037573 3863.562611 5031.879963 2982.744885 2695.2922 2787.730493 1451.105486 4239.531532 4523.731639 0.960169665 0.579397228 0.854065387 1.112329458 0.659354958 0.595811692 0.616245771 0.320776209 0.937175737 1 12.14329763 -4.343523244 0.410719659 0.980975611 1.20E-22 0.588156766 0.149846401 2.448947765 0.292617034 0.040378676 1.160858147 4.53E-05 4.343523244 -0.980975611 GYYS(ph)PYSVSGSGSTAGSR ddPTM_HeLa_CUDC101_4h_R1 5 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 GYY(0.017)S(0.98)PYS(0.004)VSGSGSTAGSR;GY(0.001)Y(0.081)S(0.627)PYS(0.291)VSGSGSTAGSR;GYYS(0.996)PYS(0.004)VSGSGSTAGSR;GYYS(0.923)PYS(0.076)VSGSGSTAGSR;GYYS(0.774)PYS(0.226)VSGSGSTAGSR ;;;; 286.85 4.29E-104 2406910000 13569.7 12152.9 11380.7 12429.4 13820.9 12798.4 14301.6 16403.2 13577 13199.3 TRUE FALSE FALSE 11979.08034 12527.31644 11995.97507 12936.32466 12801.35974 12554.29184 14853.2175 18270.47398 13017.35031 13120.78998 0.912984687 0.95476846 0.914272318 0.98594099 0.975654649 0.956824388 1.132036831 1.392482771 0.992116354 1 13.67956696 -4.343493527 1.856410356 0.95644881 1.489787756 0.952344862 0.029808017 0.119306646 0.476102222 0.005180557 0.103641915 4.53E-05 4.343493527 0.533338946 EGAAGS(ph)PGGPR ddPTM_HeLa_CUDC101_4h_R1 2 EGAAGSPGGPR 11 0 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6;P53814-2;H7BZZ8;B5MCI0 A0A087WVP4 SMTN Smoothelin 1 0 EGAAGS(1)PGGPR;EGAAGS(1)PGGPR ; 87.216 0.028812 18219200 6961.1 7171.3 9658.9 9521.3 7891.6 7222 5544.8 2735.8 10110.8 8768.2 TRUE FALSE FALSE 6145.13041 7392.239253 10181.08935 9909.619769 7309.45239 7084.252383 5758.664793 3047.232414 9694.028544 8716.046356 0.705036453 0.848118396 1.168085728 1.136939773 0.838620183 0.812782779 0.660696898 0.349611772 1.112204794 1 13.08945815 -4.343152845 1.446677631 0.899116242 0.18482805 0.606296601 0.15134305 0.649441626 1.360046656 0.024807037 0.636402593 4.54E-05 4.343152845 -0.714288193 RAS(ph)PPDPS(ph)PSPSAASASER ddPTM_HeLa_CUDC101_4h_R1 1 RASPPDPSPSPSAASASER 19 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 2 0 RAS(1)PPDPS(0.968)PS(0.031)PS(0.001)AASASER 81.525 0.0030704 8382300 1744.1 1845.7 1241.3 1736.4 1828 1784.7 1963.1 2110.9 1958.3 1746.9 TRUE FALSE FALSE 1539.659242 1902.563829 1308.408433 1807.217897 1693.152082 1750.659821 2038.817425 2351.196323 1877.578045 1736.509361 0.886640335 1.095625438 0.753470417 1.040718776 0.975031935 1.008148796 1.17408951 1.35397849 1.081236927 1 10.76197447 -4.341816577 1.155869249 0.948208512 1.519312304 0.604727965 0.096115026 0.568360636 0.677531387 0.012415509 0.376793344 4.55E-05 4.341816577 0.571103791 S(ph)RFSGGFGAR ddPTM_HeLa_CUDC101_4h_R1 2 SRFSGGFGAR 10 1 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;A0A2R8YDT5;A0A0J9YVQ7 A0A2R8Y5G6 1 0 S(0.999)RFS(0.001)GGFGAR;S(0.999)RFS(0.001)GGFGAR ; 71.888 0.034372 91170000 5809.3 5508.9 5143.7 5266.4 5426.4 4781 3792.5 2272.5 4491.8 4775.9 TRUE FALSE FALSE 5128.34266 5678.622679 5421.783981 5481.186555 5026.105283 4689.810391 3938.777995 2531.192214 4306.646103 4747.492734 1.080221276 1.196130884 1.142031022 1.154543432 1.058686251 0.987849935 0.829654349 0.533164 0.907141168 1 12.21295008 -4.341183243 1.430840009 1.068934483 0.366800411 0.82486194 0.077946248 0.299031102 0.607212569 0.010970143 0.286076593 4.56E-05 4.341183243 -0.702134072 YMSQMS(ph)VPEQAELEK ddPTM_HeLa_CUDC101_4h_R1 2 YMSQMSVPEQAELEK 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154;Q15154-4;Q15154-2;E7EV93;E9PGW9;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 0 YMS(0.001)QMS(0.999)VPEQAELEK;Y(0.001)MS(0.001)QMS(0.999)VPEQAELEK ; 118.71 0.00096511 96610000 3841.7 1897.45 2317.67 2473.3 2543.5 3098.9 5239.4 8635 1969.82 2327.7 TRUE FALSE FALSE 3391.38175 1955.908185 2442.970251 2574.171865 2355.871072 3039.793646 5441.485413 9617.973496 1888.623186 2313.854737 1.465684814 0.845302929 1.055801046 1.11250366 1.018158588 1.313735732 2.351697073 4.156688552 0.816223748 1 11.17608258 -4.338046681 1.786120208 1.159535669 4.874609684 0.959737112 0.19601985 0.111482411 0.398679811 0.030952421 0.660132313 4.59E-05 4.338046681 3.715074016 up NSDLLT(ph)SPDVGLLK ddPTM_HeLa_CUDC101_4h_R1 1 NSDLLTSPDVGLLK 14 0 P05412 P05412 JUN Transcription factor AP-1 1 0 NSDLLT(0.676)S(0.324)PDVGLLK 116.87 0.0092202 4920000 3870.1 3230.1 2920.3 2996.8 3610.9 3098.1 2670.9 2349 3129.2 3244.3 TRUE FALSE FALSE 3416.452745 3329.615552 3078.180251 3119.022457 3344.531101 3039.008904 2773.917508 2616.400665 3000.213052 3225.002759 1.059364286 1.032438048 0.95447368 0.967137919 1.03706302 0.942327536 0.860128724 0.811286334 0.930297825 1 11.65508468 -4.337937873 0.739848117 1.024243863 0.67721148 0.653973709 0.044028609 0.804939967 0.330512756 0.006290278 0.226169938 4.59E-05 4.337937873 -0.347032383 SEPTQALELTEDDIKEDGIVPLR ddPTM_HeLa_CUDC101_4h_R1 1 SEPTQALELTEDDIKEDGIVPLR 23 1 O43396;K7ER96 O43396 TXNL1 Thioredoxin-like protein 1 0 0 148.2 2.67E-07 5757600 527.35 499.04 514.28 455.59 565.82 470.84 465.53 412.79 431.86 366.07 FALSE FALSE TRUE 465.5348324 514.4148309 542.0835324 474.1709294 524.0805859 461.8595115 483.485648 459.780345 414.058548 363.8925994 1.279319319 1.413644663 1.489680014 1.303051863 1.440206772 1.269219303 1.328649302 1.263505622 1.137859217 1 8.507368901 -8.60086252 0.743109336 1.012509636 1.357088835 0.641326591 0.082076338 0.228426454 0.255224046 0.040029128 0.017445524 2.51E-09 8.60086252 0.3445792 QT(ph)SLTSSQLAEEK ddPTM_HeLa_CUDC101_4h_R1 1 QTSLTSSQLAEEK 13 0 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 0 QT(0.641)S(0.357)LT(0.001)SSQLAEEK 121.99 0.0097061 8423800 1728.8 1405.5 1742.1 1442.8 1508.1 1500.1 1893 2324.9 1411.9 2086.5 TRUE FALSE FALSE 1526.152685 1448.801789 1836.283196 1501.64362 1396.850468 1471.488092 1966.013644 2589.557218 1353.700884 2074.089405 0.735818177 0.698524271 0.885344282 0.724001394 0.673476497 0.709462229 0.947892429 1.248527287 0.652672388 1 11.01826237 -4.337696834 3.217890517 0.826760123 1.276654981 0.5802454 0.117485917 0.194172459 3.205176983 0.019198454 0.193322037 4.60E-05 4.337696834 0.449894858 SAPTS(ph)PTATNISSK ddPTM_HeLa_CUDC101_4h_R1 2 SAPTSPTATNISSK 14 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 SAPT(0.006)S(0.991)PT(0.001)AT(0.002)NISSK;SAPT(0.012)S(0.98)PT(0.008)AT(0.001)NISSK ; 181.75 8.22E-11 83204000 6836.5 7460.3 6844 6814.9 8019.6 6605.6 7321.3 8197 7804.4 7577.1 TRUE FALSE FALSE 6035.135833 7690.143 7214.007342 7092.841079 7428.010085 6479.609186 7603.684993 9130.113347 7482.699329 7532.031072 0.801262737 1.020991938 0.957777162 0.941690364 0.986189517 0.860273826 1.009513227 1.212171493 0.993450406 1 12.87882324 -4.337159936 2.893768721 0.922004825 1.2392264 0.564047667 0.067750338 0.201578091 2.554030599 0.011597397 0.135164539 4.60E-05 4.337159936 0.317221575 ERVDDSTGTVIS(ph)DVEEDAGELSR ddPTM_HeLa_CUDC101_4h_R1 4 ERVDDSTGTVISDVEEDAGELSR 23 1 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R403 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 1 0 ERVDDSTGT(0.001)VIS(0.997)DVEEDAGELS(0.002)R;ERVDDS(0.005)T(0.002)GT(0.065)VIS(0.928)DVEEDAGELSR;ERVDDSTGTVIS(1)DVEEDAGELSR;ERVDDSTGT(0.008)VIS(0.992)DVEEDAGELSR ;;; 114.03 2.68E-06 68738400 4822.8 5004.35 4036.92 4319.49 5043.32 4314.31 4565.91 4902.59 5033.42 4439.89 TRUE FALSE FALSE 4257.478695 5158.528092 4255.168106 4495.657473 4671.284331 4232.021725 4742.018678 5460.681029 4825.940297 4413.481337 0.964653155 1.168811579 0.964129625 1.018619346 1.058412617 0.958885153 1.074439499 1.23727294 1.093454334 1 12.10770138 -4.336718178 2.746532001 1.001466295 1.262612549 0.422928324 0.067107256 0.194077713 2.149843644 0.008331061 0.104490717 4.61E-05 4.336718178 0.261146253 QLPLEPESPS(ph)GQVGPRPAPPQEESPSSEAK ddPTM_HeLa_CUDC101_4h_R1 2 QLPLEPESPSGQVGPRPAPPQEESPSSEAK 30 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 QLPLEPES(0.152)PS(0.528)GQVGPRPAPPQEES(0.089)PS(0.106)S(0.126)EAK;QLPLEPES(0.132)PS(0.448)GQVGPRPAPPQEES(0.178)PS(0.195)S(0.048)EAK ; 75.82 1.42E-05 86148000 2996.1 2740.6 2514.6 2051.42 2822.1 2577.7 3068.2 3751.5 3204.2 2260.7 TRUE FALSE FALSE 2644.9017 2825.034638 2650.546882 2135.085775 2613.919305 2528.534667 3186.541502 4178.555596 3072.12152 2247.253256 1.176948656 1.257105593 1.179460693 0.950086853 1.163161873 1.125166761 1.417971692 1.859405737 1.36705621 1 11.133947 -4.33587495 1.695755285 1.099698173 2.059311819 0.756342929 0.120832753 0.224244131 0.698218587 0.014602667 0.331623956 4.61E-05 4.33587495 0.959613645 ISLS(ph)KSPTKTDPK ddPTM_HeLa_CUDC101_4h_R1 1 ISLSKSPTKTDPK 13 2 A0A0A0MRN4;Q5BKZ1-3;Q5BKZ1 A0A0A0MRN4 ZNF326 DBIRD complex subunit ZNF326 1 0 IS(0.024)LS(0.744)KS(0.219)PT(0.013)KTDPK 73.722 0.037082 586230000 6758.1 6083.1 6011.3 6061.7 6057.2 5749.2 6197.2 6678.5 5966.9 6133.3 TRUE FALSE FALSE 5965.925763 6270.513101 6336.289061 6308.922327 5610.372424 5639.543589 6436.22808 7438.753445 5720.941856 6096.818859 0.978530919 1.028489323 1.039277894 1.034789203 0.920213074 0.924997727 1.055669888 1.22010406 0.938348668 1 12.57384097 -4.335296144 3.234757259 0.990679019 1.235632945 0.733352379 0.043015025 0.105665602 1.767890101 0.005714341 0.057637567 4.62E-05 4.335296144 0.244953927 GGLVS(ph)DAYGEDDFSR ddPTM_HeLa_CUDC101_4h_R1 3 GGLVSDAYGEDDFSR 15 0 J3QQJ0;Q9UHR5-2;Q9UHR5;J3KS14;F5H478;J3KRU5;X6R3T8;J3QLH3 J3QQJ0 SAP30BP SAP30-binding protein 1 0 GGLVS(1)DAYGEDDFSR;GGLVS(1)DAYGEDDFSR;GGLVS(0.999)DAYGEDDFS(0.001)R ;; 231.58 4.24E-43 23507000 5241.6 3837.3 4288.6 3921 4385.8 4338.9 4571.1 4903 4071.3 4616.8 TRUE FALSE FALSE 4627.187594 3955.522665 4520.454688 4080.915328 4062.268272 4256.142712 4747.408858 5461.137701 3903.479291 4589.339068 1.008247054 0.861893751 0.984990349 0.889216348 0.885153224 0.927397747 1.034442822 1.189961696 0.850553693 1 12.16407068 -4.334536516 3.043287189 0.971832695 1.207893403 0.5238409 0.067664154 0.194359675 2.794398056 0.009068139 0.099638234 4.63E-05 4.334536516 0.236060708 TSASEGNPYVSSTLSVPAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 TSASEGNPYVSSTLSVPASPR 21 0 Q86SQ0-2;Q86SQ0-3;Q86SQ0;G5E9V3;E9PFQ4;E9PDY7;A0A1W2PQ63 Q86SQ0-2 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 TSASEGNPYVSSTLSVPAS(1)PR;TSASEGNPYVSSTLSVPAS(1)PR;TSASEGNPYVSSTLSVPAS(1)PR;TSASEGNPYVSSTLSVPAS(1)PR ;;; 365.69 4.14E-249 340605000 5320.4 4401.66 4302.88 3704.8 4853.83 4621.43 4751.71 5035.7 4214.36 4870.43 TRUE FALSE FALSE 4696.750777 4537.269927 4535.506708 3855.897758 4495.772631 4533.283923 4934.985046 5608.943733 4040.642297 4841.460466 0.970110323 0.937169674 0.936805483 0.796432768 0.928598439 0.936346368 1.019317431 1.158523089 0.834591613 1 12.2412266 -4.3339928 2.677355226 0.958484895 1.181652613 0.483113215 0.067842348 0.260750325 2.69577769 0.009045239 0.118796811 4.63E-05 4.3339928 0.223167718 SEQDQAENEGEDSAVLMER ddPTM_HeLa_CUDC101_4h_R1 1 SEQDQAENEGEDSAVLMER 19 0 Q99613-2;Q99613;B5ME19 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 0 0 219.03 2.48E-32 23292000 1146.7 1034.7 809.76 894.1 1225.3 780.52 809.52 912.38 851.37 777.84 FALSE FALSE TRUE 1012.285564 1066.577881 853.538075 930.5652626 1134.91206 765.6328814 840.7434576 1016.241651 816.2761682 773.2133731 1.309193037 1.379409511 1.103884264 1.203503839 1.467786383 0.990196119 1.087336933 1.314309461 1.055693288 1 9.59472278 -9.402259861 1.143076628 1.000729791 1.233216219 0.258209903 0.137503455 0.507827957 1.192681437 0.092632854 0.023880736 3.96E-10 9.402259861 0.232486429 YQQETSVSQLPGRPKS(ph)PLSK ddPTM_HeLa_CUDC101_4h_R1 2 YQQETSVSQLPGRPKSPLSK 20 2 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 YQQETSVSQLPGRPKS(0.904)PLS(0.096)K;YQQETSVSQLPGRPKS(0.984)PLS(0.016)K ; 91.643 0.0014095 129270000 3415.1 3148 3086.6 3512.4 3937.1 3176.2 3542.5 3996.5 3658.3 3655 TRUE FALSE FALSE 3014.787155 3244.986149 3253.470932 3655.650854 3646.667977 3115.619277 3679.135412 4451.445406 3507.503326 3633.259897 0.829774704 0.893133506 0.895468814 1.006162773 1.003690372 0.857527225 1.012626544 1.225193224 0.9653874 1 11.82704885 -4.333550054 2.907277183 0.923270464 1.254010936 0.679800735 0.060435787 0.175312463 2.242970684 0.010508349 0.123439536 4.64E-05 4.333550054 0.330740472 SPGS(ph)TPTTPT(ph)SSQAPQK ddPTM_HeLa_CUDC101_4h_R1 2 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 2 0 S(0.001)PGS(0.952)T(0.047)PT(0.002)T(0.007)PT(0.88)S(0.095)S(0.016)QAPQK;S(0.076)PGS(0.626)T(0.298)PT(0.01)T(0.046)PT(0.773)S(0.151)S(0.02)QAPQK ; 173.77 1.26E-06 150541000 5497 4430.2 3947.3 4388.1 4377.1 4393.1 4999.4 5931.6 4493 4654.8 TRUE FALSE FALSE 4852.649993 4566.689211 4160.702978 4567.065685 4054.210053 4309.308937 5192.228533 6606.829368 4307.796638 4627.113043 1.048742477 0.986941354 0.899200633 0.987022717 0.876185651 0.931316978 1.122131334 1.427851299 0.930990144 1 12.17589663 -4.333293178 2.831272386 0.994415326 1.471812745 0.846775094 0.059523488 0.112174838 1.340299324 0.009230129 0.112580171 4.64E-05 4.333293178 0.477397419 T(ph)RSWDSSSPVDRPEPEAASPTTR ddPTM_HeLa_CUDC101_4h_R1 1 TRSWDSSSPVDRPEPEAASPTTR 23 2 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 T(0.521)RS(0.435)WDS(0.007)S(0.019)S(0.019)PVDRPEPEAASPTTR 86.701 0.00095119 29421000 355.8 326.46 378.35 464.42 335.07 512.45 690.48 949.06 283.87 398.35 TRUE FALSE FALSE 314.0936634 336.5178456 398.8047454 483.361055 310.3525537 502.67587 717.1120449 1057.097154 272.1687584 395.9805965 0.793204683 0.84983418 1.007132039 1.220668536 0.783756973 1.269445712 1.810977738 2.669568064 0.687328523 1 8.629285928 -4.333100954 1.202887364 0.914752916 3.357056608 0.936019398 0.146155075 0.212158899 0.275926335 0.020457116 0.622817208 4.64E-05 4.333100954 2.442303692 up S(ph)GASEANLIVAK ddPTM_HeLa_CUDC101_4h_R1 2 SGASEANLIVAK 12 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 S(0.999)GAS(0.001)EANLIVAK;S(0.995)GAS(0.005)EANLIVAK ; 176.43 3.90E-07 82050000 3972.6 2930.6 3041 3135.2 2809 2995.8 2374.01 644.59 2491 3782.5 TRUE FALSE FALSE 3506.93785 3020.888312 3205.405659 3263.067007 2601.785666 2938.660106 2465.576361 717.9675201 2388.319926 3760.001522 0.932695859 0.803427417 0.85250116 0.867836619 0.691963993 0.781558223 0.655738128 0.190948731 0.635191213 1 11.87651753 -4.332982768 0.526592744 0.959423978 3.31E-33 0.574871246 0.140042409 1.147991682 0.223418698 0.019236667 0.665338374 4.65E-05 4.332982768 -0.959423978 GSVGAVPSGT(ph)SPGGVATTAAAGSR ddPTM_HeLa_CUDC101_4h_R1 1 GSVGAVPSGTSPGGVATTAAAGSR 24 0 Q6ZNB6-2;Q6ZNB6 Q6ZNB6-2 NFXL1 NF-X1-type zinc finger protein NFXL1 1 0 GSVGAVPS(0.003)GT(0.957)S(0.038)PGGVAT(0.001)TAAAGSR 124.1 4.64E-08 0 1498 1368.7 1362.3 1427.5 1152 1204.1 1003.3 533.65 1368.6 1673 TRUE FALSE FALSE 1322.406711 1410.868025 1435.950059 1485.71962 1067.019255 1181.133799 1041.997617 594.3985589 1312.185729 1663.048922 0.79517006 0.84836231 0.863444268 0.893370965 0.641604249 0.71022192 0.626558608 0.357414957 0.78902413 1 10.69961489 -4.000651374 0.376892786 0.924646458 8.51E-38 0.75957078 0.083758855 2.44998215 0.20712664 0.025512964 1.064983221 9.99E-05 4.000651374 -0.924646458 down EEPLSEEEPCTSTAIAS(ph)PEKK ddPTM_HeLa_CUDC101_4h_R1 2 EEPLSEEEPCTSTAIASPEKK 21 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 EEPLSEEEPCT(0.021)S(0.021)T(0.083)AIAS(0.875)PEKK;EEPLSEEEPCT(0.016)S(0.054)T(0.269)AIAS(0.662)PEKK ; 104.53 4.37E-05 26248200 5141.5 4394.2 4511 4415.9 4141.1 5010.6 4664.8 5002.4 4219.5 4216.2 TRUE FALSE FALSE 4538.821164 4529.580094 4754.878305 4595.999489 3835.619303 4915.031153 4844.722899 5571.852996 4045.570424 4191.121855 1.082960916 1.080756001 1.134512064 1.096603642 0.915177233 1.172724469 1.155948948 1.329441898 0.965271487 1 12.03312075 -4.332719567 1.256316382 1.048740869 1.422977852 0.609787866 0.06978251 0.63341574 0.916935154 0.009941148 0.294590042 4.65E-05 4.332719567 0.374236984 ASGPEACKQES(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 1 ASGPEACKQESPQK 14 1 Q9P219-3;Q9P219-2;Q9P219 Q9P219-3 CCDC88C Protein Daple 1 0 ASGPEACKQES(1)PQK 67.299 0.029618 15639000 4303.3 3668 3181.2 3275 3845.2 4022.4 3243.7 2648.7 4242.5 3209.4 TRUE FALSE FALSE 3798.873697 3781.006732 3353.185295 3408.568656 3561.547257 3945.679422 3368.810596 2950.217302 4067.622354 3190.310346 1.190753653 1.185153268 1.051053011 1.068412877 1.116363886 1.236769779 1.055950748 0.924743044 1.274992685 1 11.63948106 -4.332441475 3.952814595 1.105088105 0.919087429 0.309719513 0.087156834 0.21474653 5.780849816 0.012068968 0.095903337 4.65E-05 4.332441475 -0.186000676 S(ph)LPEEDVAEIQHAEEFLIKPESK ddPTM_HeLa_CUDC101_4h_R1 4 SLPEEDVAEIQHAEEFLIKPESK 23 1 O60832;O60832-2;H7C2Q9;H7C0M1;C9IYT0 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK ;;; 183.1 7.17E-14 508246000 19532 18560.25 17293 17665.16 18665.25 16942.65 14777.01 7911.07 20709.5 19447.13 TRUE FALSE FALSE 17242.48857 19132.0693 18227.91189 18385.62158 17288.35169 16619.49718 15346.96423 8811.634231 19855.84564 19331.45761 0.891939393 0.989685811 0.942914511 0.9510727 0.894311854 0.859712574 0.793885518 0.455818408 1.027126151 1 14.2386628 -4.000647426 1.092747073 0.948495075 2.13E-20 0.927432842 0.042181198 0.535437125 0.350470509 0.006676405 0.668807593 9.99E-05 4.000647426 -0.948495075 down DTT(ph)SPMELAALEK ddPTM_HeLa_CUDC101_4h_R1 2 DTTSPMELAALEK 13 0 Q6VY07-2;Q6VY07 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 DT(0.018)T(0.896)S(0.086)PMELAALEK;DT(0.003)T(0.499)S(0.499)PMELAALEK ; 260.97 3.24E-69 42943000 12048.7 10436.1 9992.6 9441 10304.2 9109.2 7845.7 4323.5 11409.7 10895.9 TRUE FALSE FALSE 10636.36965 10757.62387 10532.83018 9826.044787 9544.079695 8935.457187 8148.311277 4815.669764 10939.38734 10831.0907 0.982022027 0.993217042 0.972462559 0.907207322 0.881174386 0.824982214 0.752307547 0.444615404 1.009998682 1 13.40289091 -3.993716781 0.674507777 0.989443063 6.76E-17 0.963497018 0.031545142 0.482063261 0.119122343 0.005139668 0.396012866 0.000101457 3.993716781 -0.989443063 down AGLQMKS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 1 AGLQMKSPEK 10 1 Q9BRQ0 Q9BRQ0 PYGO2 Pygopus homolog 2 1 0 AGLQMKS(1)PEK 122.7 0.020891 15232000 1273.7 993.4 713.87 909.4 888.11 888.46 879.9 852.65 1110.4 710.35 TRUE FALSE FALSE 1124.398817 1024.005477 752.4639715 946.4892628 822.5958947 871.5141058 913.8380377 949.7122295 1064.628842 706.1248066 1.592351389 1.450176324 1.06562461 1.340399394 1.164944054 1.234221058 1.294159374 1.344963696 1.507706332 1 9.46377939 -4.33090125 3.853506279 1.275622251 1.347495198 0 0.179707815 1.523190384 38.88498778 0.031896507 0.262028131 4.67E-05 4.33090125 0.071872947 SSSSSGVPYS(ph)PAIPNK ddPTM_HeLa_CUDC101_4h_R1 4 SSSSSGVPYSPAIPNK 16 0 A0A0A0MRE1;B4DJ07;A0A0A0MSB8;Q9UPT5-4;Q9UPT5-2;Q9UPT5-5;Q9UPT5-1;Q9UPT5-6;Q9UPT5 A0A0A0MRE1 EXOC7 Exocyst complex component 7 1 0 SSSSSGVPY(0.001)S(0.999)PAIPNK;SSSSSGVPYS(1)PAIPNK;SSSSSGVPYS(1)PAIPNK;SSSS(0.001)SGVPYS(0.999)PAIPNK ;;; 178.67 1.49E-07 243273000 25085 20034.7 19997.6 18056.7 22789.7 20650.6 21595.8 23064.5 19676.2 20948.6 TRUE FALSE FALSE 22144.57433 20651.94536 21078.73075 18793.13027 21108.54923 20256.72421 22428.75724 25690.06945 18865.13871 20823.9968 1.063416142 0.991737828 1.012232712 0.902474701 1.013664641 0.972758708 1.077063037 1.23367621 0.905932655 1 14.34595937 -4.330416927 2.896080767 1.013306495 1.255445319 0.64264516 0.053827827 0.153465279 1.940360344 0.006630143 0.079299188 4.67E-05 4.330416927 0.242138824 ATEPPS(ph)PDAGELSLASR ddPTM_HeLa_CUDC101_4h_R1 2 ATEPPSPDAGELSLASR 17 0 Q8IYB8 Q8IYB8 SUPV3L1 "ATP-dependent RNA helicase SUPV3L1, mitochondrial" 1 0 ATEPPS(1)PDAGELSLASR;ATEPPS(1)PDAGELSLASR ; 270.78 6.80E-86 41930000 4597.3 3833.4 3261.7 3334 4343.6 3655 4036.5 4484 3687.3 3915.6 TRUE FALSE FALSE 4058.411463 3951.50251 3438.037368 3469.974931 4023.181282 3585.286965 4192.189157 4994.440435 3535.307933 3892.309837 1.042674307 1.015207595 0.883289746 0.891495044 1.03362308 0.921120649 1.077044052 1.283155926 0.908280194 1 11.92641084 -4.3302848 3.12796498 0.996848483 1.306102538 0.673691673 0.064882896 0.140364497 2.161837196 0.008930415 0.096073058 4.67E-05 4.3302848 0.309254054 RYS(ph)DFEWLR ddPTM_HeLa_CUDC101_4h_R1 2 RYSDFEWLR 9 1 O60493-4;O60493;O60493-3 O60493-4 SNX3 Sorting nexin-3 1 0 RY(0.206)S(0.794)DFEWLR;RY(0.012)S(0.988)DFEWLR ; 105.66 0.0066314 22165100 5639.5 5284.5 4064.9 4427.1 4780.2 5002.7 4142.5 3062.2 4416 4614.1 TRUE FALSE FALSE 4978.446359 5447.309181 4284.66079 4607.656274 4427.57417 4907.281833 4302.277613 3410.78847 4233.970611 4586.655128 1.085419815 1.187643071 0.934158045 1.00457875 0.965316564 1.069904254 0.937998932 0.743633078 0.92310638 1 12.16322672 -4.329533219 2.295823917 1.037947774 0.694118691 0.539174907 0.076270847 0.24955083 1.708066406 0.009828584 0.161441341 4.68E-05 4.329533219 -0.343829082 KIQSSLSSAS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 KIQSSLSSASPSK 13 1 Q5W0B1 Q5W0B1 RNF219 RING finger protein 219 1 0 KIQSSLSS(0.162)AS(0.8)PS(0.038)K 103.13 0.0040322 25334000 3704.7 3748 3572.4 3872.9 4153.9 4011.3 4090.7 4304.8 4725.4 4544.9 TRUE FALSE FALSE 3270.440682 3863.471438 3765.53475 4030.853602 3847.475073 3934.791136 4248.479669 4794.841031 4530.617012 4517.866733 0.723890472 0.855153918 0.833476278 0.892202856 0.851613228 0.870940063 0.94037295 1.061306434 1.00282219 1 12.141426 -4.329327835 1.808467067 0.863245692 1.109997114 0.328917728 0.077204118 0.780690491 2.843787443 0.014292797 0.311522185 4.68E-05 4.329327835 0.246751422 S(ph)PVPAQIAITVPK ddPTM_HeLa_CUDC101_4h_R1 2 SPVPAQIAITVPK 13 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK ; 209.6 1.03E-23 557990000 7197.5 6258.5 5869.4 5721.4 6079.5 5758.4 5226.1 4416.5 5951.9 5377.9 TRUE FALSE FALSE 6353.819961 6451.316967 6186.717518 5954.743422 5631.027397 5648.568114 5427.672428 4919.256508 5706.560163 5345.912012 1.188538073 1.206775748 1.157280087 1.113887286 1.053333348 1.056614494 1.015294007 0.920190324 1.067462418 1 12.38422038 -4.328454533 0.982016732 1.106217409 0.840976314 0.526188178 0.058598635 1.626500103 1.284140013 0.012938604 0.442912641 4.69E-05 4.328454533 -0.265241094 MESS(ph)T(ph)GPRMPLLK ddPTM_HeLa_CUDC101_4h_R1 1 MESSTGPRMPLLK 13 1 E9PNY9;Q9NQ32-2;Q9NQ32 E9PNY9 C11orf16 Uncharacterized protein C11orf16 2 0 MES(0.006)S(0.997)T(0.997)GPRMPLLK 55.567 0.0031559 0 334.18 326.16 216.42 283.49 346.81 380.25 344.53 397.94 444.81 339.78 TRUE FALSE FALSE 295.007927 336.208603 228.1203198 295.0519475 321.2265172 372.9973648 357.8186375 443.2398811 426.4747435 337.7589734 0.873427356 0.995409832 0.67539381 0.873557687 0.951052503 1.104329993 1.05939047 1.312296389 1.262659994 1 8.399850289 -4.328130165 1.003979222 0.919142388 1.456837777 0.341597237 0.145053629 0.964584391 0.802752906 0.015964867 0.542108949 4.70E-05 4.328130165 0.537695389 RLS(ph)MEIEK ddPTM_HeLa_CUDC101_4h_R1 2 RLSMEIEK 8 1 A0A5K1VW66;P35240-4;P35240-6;P35240-5;P35240-3;P35240;P35240-2;P35240-8 A0A5K1VW66 NF2 Merlin 1 0 RLS(1)MEIEK;RLS(1)MEIEK ; 78.692 0.024573 71515000 9731.2 9691.3 8294.7 9185.5 9032.7 9515.5 7940.3 6341.8 8599.7 8283.2 TRUE FALSE FALSE 8590.523488 9989.877466 8743.136572 9560.124393 8366.375717 9334.007691 8246.560031 7063.724878 8245.216726 8233.931158 1.043307665 1.213257346 1.061842321 1.161064406 1.016085216 1.133602833 1.00153376 0.857880002 1.001370617 1 13.00736567 -4.327638562 3.482474184 1.053700067 0.846358256 0.442131682 0.071417131 0.204401758 4.124251615 0.010483879 0.09863679 4.70E-05 4.327638562 -0.207341811 TYS(ph)ATAR ddPTM_HeLa_CUDC101_4h_R1 1 TYSATAR 7 0 H7C4E7;Q9Y534 H7C4E7 CSDC2 Cold shock domain-containing protein C2 1 0 T(0.131)YS(0.868)AT(0.001)AR 95.531 0.027083 13993000 2617.9 1257.7 2884.5 2871.9 2081.6 1759.6 1700.9 663.99 2144.3 2807.7 TRUE FALSE FALSE 2311.03373 1296.448246 3040.444795 2989.028495 1928.044515 1726.038562 1766.504283 739.5759377 2055.911046 2790.999676 0.828030813 0.464510354 1.089374829 1.070952649 0.690807861 0.618430227 0.632928874 0.264986035 0.736621743 1 11.44656624 -4.327072021 0.754248928 0.90233242 1.35E-18 0.454635484 0.186407631 1.524010141 0.647602838 0.030889691 1.135589157 4.71E-05 4.327072021 -0.90233242 TEIMS(ph)PLYQDEAPK ddPTM_HeLa_CUDC101_4h_R1 4 TEIMSPLYQDEAPK 14 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 TEIMS(1)PLYQDEAPK;TEIMS(1)PLYQDEAPK;T(0.004)EIMS(0.995)PLY(0.001)QDEAPK;T(0.003)EIMS(0.997)PLYQDEAPK ;;; 159.41 5.30E-05 97594300 19705.9 16102 16797.2 15893.1 16716.2 18017 14870.1 10850.9 19893.8 16737.4 TRUE FALSE FALSE 17396.00427 16598.08353 17705.30744 16541.28931 15483.07923 17673.35574 15443.64474 12086.1226 19073.76914 16637.8452 1.045568345 0.997610167 1.064158683 0.994196611 0.930594019 1.06223826 0.928223851 0.726423551 1.146408619 1 14.02218098 -4.326777079 2.614641408 1.017036195 0.688327444 0.730075526 0.055777851 0.110061538 1.060472636 0.005257045 0.073532497 4.71E-05 4.326777079 -0.328708752 SS(ph)GGGYGGGPAGGHGGNR ddPTM_HeLa_CUDC101_4h_R1 1 SSGGGYGGGPAGGHGGNR 18 0 Q9H2U1-3;Q9H2U1-2;Q9H2U1 Q9H2U1-3 DHX36 ATP-dependent RNA helicase DHX36 1 0 S(0.025)S(0.975)GGGYGGGPAGGHGGNR 204.51 9.76E-18 2729000 302.96 343.66 126.46 285.87 318.63 215.21 178.27 42.509 276.37 229.95 TRUE FALSE FALSE 267.4474881 354.2477573 133.2968101 297.5290142 295.1252997 211.1052278 185.1459336 47.34805273 264.9779116 228.5822472 1.170027381 1.549760586 0.583145943 1.301627829 1.291112076 0.923541659 0.809975122 0.207137927 1.159223496 1 7.836569551 -4.326666926 1.67419469 1.106462391 1.18E-16 0.577763695 0.241089152 0.458665444 1.361532697 0.03270426 0.779983072 4.71E-05 4.326666926 -1.106462391 YS(ph)GAYGASVSDEELKR ddPTM_HeLa_CUDC101_4h_R1 2 YSGAYGASVSDEELKR 16 1 C9JRZ6;F8WAR4;Q9NX63;A0A286YEX5 C9JRZ6 CHCHD3 MICOS complex subunit MIC19 1 0 Y(0.01)S(0.99)GAYGASVSDEELKR;Y(0.479)S(0.513)GAY(0.007)GASVSDEELKR ; 108.96 0.00099979 41618000 3913.5 3315.78 3259.16 3076.85 4153.5 3444.01 3552.6 3666.89 3714.6 3730.8 TRUE FALSE FALSE 3454.765462 3417.935252 3435.360048 3202.337242 3847.10458 3378.321247 3689.624972 4084.313936 3561.482616 3708.609036 0.931552889 0.921621885 0.926320358 0.863487418 1.037344337 0.910940251 0.994881083 1.101306149 0.960328409 1 11.85666247 -4.325398571 3.185847013 0.955182489 1.113085751 0.499492158 0.046754886 0.205737195 3.321929477 0.006832762 0.07308318 4.73E-05 4.325398571 0.157903262 S(ph)REDLSAQPVQTK ddPTM_HeLa_CUDC101_4h_R1 3 SREDLSAQPVQTK 13 1 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 S(1)REDLSAQPVQTK;S(0.986)REDLS(0.014)AQPVQTK;S(1)REDLSAQPVQTK ;; 228.11 1.83E-32 581183100 14355.3 12606.8 12720.4 13009.5 14763 12032.8 13467.5 14257.5 14586.1 14251.2 TRUE FALSE FALSE 12672.5935 12995.20057 13408.1033 13540.08364 13673.9629 11803.29439 13986.94599 15880.51617 13984.85478 14166.43323 0.894550752 0.917323391 0.946469947 0.955786359 0.965236816 0.833187451 0.987330104 1.120996084 0.987182487 1 13.79018895 -4.324548626 3.820843403 0.941057061 1.128847646 0.586819552 0.04609024 0.132179952 3.369635548 0.007111268 0.060246601 4.74E-05 4.324548626 0.187790585 VQSS(ph)PNLLAAGR ddPTM_HeLa_CUDC101_4h_R1 1 VQSSPNLLAAGR 12 0 O94875-12;O94875-11;O94875-9;C9J4Z9;C9IZT7;C9JWC3;C9JN77;C9JI79;C9J372;C9JZ60;C9JDX2;C9JBB0;C9JEA9;C9JG84;C9J9D3 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 VQS(0.341)S(0.659)PNLLAAGR 90.229 0.021199 28565000 1108.6 841.09 880.64 803.51 1267.6 1092.3 856.84 612.43 695.66 940.6 TRUE FALSE FALSE 978.6515885 867.002986 928.2500622 836.2806109 1174.091673 1071.466197 889.8886058 682.1465557 666.9846004 935.0052694 1.046680292 0.927270695 0.99277522 0.894412725 1.255705943 1.145946694 0.951747156 0.729564397 0.713348494 1 9.868830685 -4.323581636 3.550390547 1.02826235 0.71222277 0.219157691 0.140067847 0.170028675 3.621211771 0.013646927 0.127129609 4.75E-05 4.323581636 -0.31603958 STTS(ph)VSEEDVSSR ddPTM_HeLa_CUDC101_4h_R1 2 STTSVSEEDVSSR 13 0 Q96IZ0 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein 1 0 STT(0.047)S(0.94)VS(0.013)EEDVSSR;STT(0.001)S(0.795)VS(0.204)EEDVSSR ; 218.02 3.37E-25 84950000 5035.8 3465.1 3064.3 3213.7 3452.4 3473.8 3827.9 4175.9 2763.07 3501.2 TRUE FALSE FALSE 4445.511158 3571.855624 3229.965327 3344.768577 3197.72333 3407.543053 3975.543385 4651.267576 2649.175085 3480.374707 1.277308202 1.02628479 0.928051029 0.961036917 0.918787085 0.979073617 1.142274531 1.336427244 0.761175249 1 11.76502692 -4.322444119 3.505551615 1.075852882 1.352489074 0.196838288 0.14749492 0.300587946 6.210019819 0.020622361 0.19617455 4.76E-05 4.322444119 0.276636193 VTSSITIYPSDSS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 2 VTSSITIYPSDSSSPR 16 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 VTSSITIYPS(0.009)DS(0.135)S(0.852)S(0.004)PR;VTSSITIYPS(0.006)DS(0.13)S(0.814)S(0.05)PR ; 220.97 1.85E-32 56536000 4269 4079.4 3872.6 3710.6 4354.7 4268.2 3309.3 1912.48 4117 4126.4 TRUE FALSE FALSE 3768.594291 4205.081479 4081.96447 3861.934307 4033.462457 4186.791196 3436.94081 2130.188993 3947.295517 4101.855989 0.918753438 1.025165557 0.995150605 0.941508994 0.983326199 1.020706531 0.837898946 0.519323204 0.962319381 1 12.00206113 -4.321858801 2.611103078 0.970890857 0.45817577 0.942714691 0.034418501 0.07759123 0.740566959 0.005673984 0.08124437 4.77E-05 4.321858801 -0.512715087 ATSAGSS(ph)PSCSLAGR ddPTM_HeLa_CUDC101_4h_R1 2 ATSAGSSPSCSLAGR 15 0 Q9BXB5-2;Q9BXB5 Q9BXB5-2 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 ATSAGS(0.225)S(0.772)PS(0.003)CSLAGR;ATSAGS(0.024)S(0.972)PS(0.004)CSLAGR ; 219.95 2.08E-32 106432000 5078.8 4114.7 4054.7 4146.9 4935.4 5187.8 6471.9 7798.7 4271.1 3966.4 TRUE FALSE FALSE 4483.470763 4241.46903 4273.909347 4316.028506 4571.325375 5088.851358 6721.523351 8686.472485 4095.04345 3942.807676 1.137126416 1.075748395 1.083976115 1.094658644 1.159408663 1.290666899 1.704755571 2.203118488 1.038611007 1 11.94500762 -4.321709032 1.067931285 1.068556737 2.720148291 0.99082587 0.034783177 0.144340587 0.138353386 0.007797469 0.262494075 4.77E-05 4.321709032 1.651591554 up EASRPPEEPSAPS(ph)PTLPAQFK ddPTM_HeLa_CUDC101_4h_R1 2 EASRPPEEPSAPSPTLPAQFK 21 1 H0Y3X6;A0A0C4DFX9;Q9H3P2;Q9H3P2-7 H0Y3X6 NELFA Negative elongation factor A 1 0 EASRPPEEPS(0.005)APS(0.71)PT(0.285)LPAQFK;EASRPPEEPS(0.037)APS(0.771)PT(0.192)LPAQFK ; 130.29 2.32E-07 555850000 5895.3 4628.3 4722.1 4846.1 4929.7 4847.7 5264.9 6033.3 4448.6 4955.6 TRUE FALSE FALSE 5204.261871 4770.892437 4977.39101 5043.744905 4566.045852 4755.238199 5467.968957 6720.106485 4265.226825 4926.123871 1.056461836 0.968488118 1.010407196 1.023876995 0.926904392 0.965310318 1.109994206 1.364177325 0.865838322 1 12.26623719 -4.321667051 2.80605346 1.011518616 1.404772272 0.786342901 0.059488569 0.093941977 1.086186174 0.006049661 0.078473275 4.77E-05 4.321667051 0.393253656 RAPSTSPS(ph)FEGTQETYTVAHEENVR ddPTM_HeLa_CUDC101_4h_R1 2 RAPSTSPSFEGTQETYTVAHEENVR 25 1 Q9BUT9 Q9BUT9 FAM195A Protein FAM195A 1 0 RAPS(0.219)T(0.219)S(0.219)PS(0.273)FEGT(0.066)QET(0.003)YTVAHEENVR;RAPS(0.072)T(0.072)S(0.072)PS(0.777)FEGT(0.006)QET(0.001)YTVAHEENVR ; 90.475 2.75E-05 48523000 966.35 775.77 967.96 966.29 995.58 754.42 1039.45 1455.38 909.17 858.09 TRUE FALSE FALSE 853.0759179 799.6705542 1020.290846 1005.699483 922.1380469 740.0306954 1079.541935 1621.054576 871.6936278 852.9860425 1.000105366 0.937495474 1.196140141 1.179033926 1.081070499 0.867576559 1.265603282 1.900446778 1.021931877 1 9.736378325 -4.321134506 2.863036224 1.021316081 1.997930727 0.875778957 0.097819506 0.083860125 1.022388359 0.013917502 0.175935241 4.77E-05 4.321134506 0.976614645 DVDELPSLQPSVGS(ph)PSRPSSSR ddPTM_HeLa_CUDC101_4h_R1 3 DVDELPSLQPSVGSPSRPSSSR 22 1 O43815-2;O43815 O43815-2 STRN Striatin 1 0 DVDELPSLQPS(0.055)VGS(0.463)PS(0.463)RPS(0.006)S(0.006)S(0.006)R;DVDELPSLQPS(0.256)VGS(0.56)PS(0.181)RPS(0.001)S(0.001)SR;DVDELPSLQPS(0.118)VGS(0.647)PS(0.224)RPS(0.004)S(0.004)S(0.004)R ;; 131.9 1.57E-07 157145000 7265.7 6406.6 6679.3 6625.6 7715.5 6419.2 5891.1 4612 7627.1 7426.4 TRUE FALSE FALSE 6414.02566 6603.979752 7040.403162 6895.820606 7146.342936 6296.764455 6118.3217 5137.011438 7312.70771 7382.227443 0.868846931 0.894578202 0.953696322 0.934111101 0.968046974 0.852962673 0.828790734 0.695861984 0.990582824 1 12.84984047 -4.320728823 1.134254019 0.936027803 0.60056075 0.775490884 0.041529885 0.676847287 0.750043814 0.008006686 0.262311567 4.78E-05 4.320728823 -0.335467053 DSISAVSSEKVSPS(ph)KSPSLSPSPPS(ph)PLEK ddPTM_HeLa_CUDC101_4h_R1 1 DSISAVSSEKVSPSKSPSLSPSPPSPLEK 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 DS(0.002)IS(0.006)AVS(0.02)S(0.019)EKVS(0.321)PS(0.267)KS(0.268)PS(0.093)LS(0.095)PS(0.18)PPS(0.729)PLEK 59.282 0.0011637 86026000 5178.2 4688.9 4794.4 4594.6 5873.1 5031.1 5596.7 6542.3 5269.4 5803.8 TRUE FALSE FALSE 4571.219246 4833.359451 5053.599766 4781.987648 5439.853114 4935.14015 5812.566594 7287.048987 5052.193102 5769.278739 0.792338081 0.837775339 0.875950009 0.828870967 0.942900033 0.85541718 1.007503166 1.263077989 0.87570619 1 12.49417525 -4.320505574 2.360810776 0.888661699 1.325939318 0.80670985 0.057506082 0.22583674 1.642823669 0.011559809 0.190545185 4.78E-05 4.320505574 0.437277619 GGS(ph)GSHNWGTVK ddPTM_HeLa_CUDC101_4h_R1 1 GGSGSHNWGTVK 12 0 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 GGS(0.783)GS(0.217)HNWGTVK 78.191 0.024989 8572700 6905.7 4828.2 3936.5 4611.2 4175.2 4012.8 3098.8 1859.8 4440.1 3939.9 TRUE FALSE FALSE 6096.224314 4976.951119 4149.319097 4799.264667 3867.203814 3936.262526 3218.321754 2071.512114 4257.077199 3916.4653 1.556562831 1.270776258 1.05945509 1.225407172 0.987421953 1.005054871 0.821741419 0.528923904 1.086969212 1 11.93533646 -4.319866064 0.656358574 1.257758617 0.131067017 0.6466162 0.153809362 1.726045063 0.533472738 0.038170262 1.428878348 4.79E-05 4.319866064 -1.126691599 (ac)AS(ph)KEMFEDTVEER ddPTM_HeLa_CUDC101_4h_R1 2 ASKEMFEDTVEER 13 1 E9PC52;Q16576 E9PC52 RBBP7 Histone-binding protein RBBP7 1 0 AS(1)KEMFEDTVEER;AS(0.995)KEMFEDT(0.005)VEER ; 62.166 0.0037812 34283300 1855.17 1618.94 2306.44 2001.79 2049.6 2623.2 3501.9 5204 2352.62 2933.9 TRUE FALSE FALSE 1637.709785 1668.817622 2431.133123 2083.431649 1898.405091 2573.166831 3636.969456 5796.402325 2255.644008 2916.449032 0.561542399 0.572208739 0.833593557 0.714372727 0.650930316 0.882294462 1.247054008 1.987486241 0.773421371 1 11.50999715 -4.319540739 1.650223429 0.759785304 2.339617686 0.905239147 0.124941456 0.268122325 0.758163194 0.026029412 0.647539827 4.79E-05 4.319540739 1.579832381 IFTTPLT(ph)PSQYYSGSK ddPTM_HeLa_CUDC101_4h_R1 1 IFTTPLTPSQYYSGSK 16 0 P49454 P49454 CENPF Centromere protein F 1 0 IFT(0.03)T(0.025)PLT(0.819)PS(0.126)QYYSGSK 126.63 0.0024489 27466000 2431.2 1988.7 1816.5 1937.8 2066.8 1967.2 1649.9 886.99 2246.1 2152 TRUE FALSE FALSE 2146.218421 2049.96949 1914.705485 2016.83186 1914.336282 1929.678938 1713.537196 987.9613563 2153.514807 2139.199808 1.003280953 0.958287992 0.89505687 0.942797326 0.894884281 0.902056428 0.801017833 0.461836876 1.006691754 1 11.06285553 -3.987572985 0.929016969 0.984359126 3.15E-31 0.926996894 0.041623463 0.617644254 0.286534069 0.007184232 0.689458919 0.000102903 3.987572985 -0.984359126 down SESELIDELSEDFDR ddPTM_HeLa_CUDC101_4h_R1 5 SESELIDELSEDFDR 15 0 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;P20810-2;E9PCH5;P20810-3;H0Y7F0;E7EQ12;E7EQA0;D6RC54;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;E7EVY3 CAST Calpastatin 0 0 ;;;; ;;;; 424.4 0 167202770 9394.98 7479.13 6654.09 6668.1 6972.18 6576.32 6338.51 6195.76 8313.24 8586.27 FALSE FALSE TRUE 8293.714686 7709.55313 7013.830233 6940.05394 6457.856172 6450.887653 6582.988454 6901.060274 7970.564729 8535.198484 0.971707301 0.903265829 0.821753618 0.813109848 0.756614645 0.7557982 0.77127538 0.808541276 0.933846441 1 13.05920899 -6.866205468 1.202670802 0.99094253 0.773302968 0.917611971 0.024811539 0.049923265 0.143430954 0.003351084 0.004796039 1.36E-07 6.866205468 -0.217639563 SESELIDELSEDFDRSECK ddPTM_HeLa_CUDC101_4h_R1 3 SESELIDELSEDFDRSECK 19 1 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;P20810-2;E9PCH5;P20810-3;H0Y7F0;E7EQ12;E7EQA0;D6RC54;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;E7EVY3 CAST Calpastatin 0 0 ;; ;; 148.41 5.53E-05 55924400 3305.43 3649.74 3319.68 3180.26 3802.63 3437.54 3426.79 3667.76 3527.45 2937.27 FALSE FALSE TRUE 2917.972506 3762.184163 3499.151942 3309.964749 3522.117561 3371.974652 3558.962438 4085.282973 3382.047018 2919.798987 0.99937445 1.288507935 1.198422206 1.13362761 1.206287685 1.154865341 1.218906662 1.39916583 1.158315018 1 11.51165334 -7.272865534 24.48754646 0.999704592 1.219671511 0.430054449 0.086225734 224.683892 481521.9791 0.011725776 0.013472785 5.34E-08 7.272865534 0.219966919 SESETSTMAAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 SESETSTMAAKK 12 1 A0A087WVF1;Q96B23-2;Q96B23 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 0 1 SESETSTMAAK(1)K 79.693 0.020496 244850 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 TITLVKS(ph)PISVPGGSALISNLGK ddPTM_HeLa_CUDC101_4h_R1 2 TITLVKSPISVPGGSALISNLGK 23 1 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 T(0.008)IT(0.03)LVKS(0.937)PIS(0.024)VPGGSALISNLGK;T(0.022)IT(0.056)LVKS(0.693)PIS(0.226)VPGGS(0.002)ALIS(0.001)NLGK ; 117.62 5.86E-07 48692000 7345.6 6825.2 6788.2 7147.5 9002.5 6832.6 6100.4 4302 7699.7 7393 TRUE FALSE FALSE 6484.559903 7035.476322 7155.190625 7439.005944 8338.403511 6702.279539 6335.694471 4791.722291 7382.315107 7349.026107 0.882369964 0.957334512 0.973624331 1.012243777 1.134627009 0.911995609 0.86211348 0.6520214 1.004529716 1 12.84333736 -4.319479021 1.961797042 0.963215321 0.583718855 0.701723377 0.065852995 0.343276073 1.523209908 0.010789972 0.224001416 4.79E-05 4.319479021 -0.379496465 EIPEDVDMEEEKES(ph)EDS(ph)DEENDFTEK ddPTM_HeLa_CUDC101_4h_R1 1 EIPEDVDMEEEKESEDSDEENDFTEK 26 1 Q8IWA0 Q8IWA0 WDR75 WD repeat-containing protein 75 2 0 EIPEDVDMEEEKES(0.977)EDS(0.994)DEENDFT(0.028)EK 58.5 0.0034051 3685300 1373.2 1092.1 1204.2 1108.5 1335 1260.3 1068.3 785.35 998.66 1222.9 TRUE FALSE FALSE 1212.235578 1125.746307 1269.302695 1153.709421 1236.51971 1236.261877 1109.504689 874.7510695 957.4948121 1215.626136 0.997210854 0.926062934 1.044155482 0.949065989 1.017187499 1.016975401 0.912702233 0.719588896 0.787655664 1 10.24748388 -4.318846258 2.485585811 0.995383973 0.677417817 0.473973159 0.073367652 0.10063729 0.838457144 0.004108953 0.063749 4.80E-05 4.318846258 -0.317966156 GEGPGEAGGPLT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 GEGPGEAGGPLTPR 14 0 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 0 GEGPGEAGGPLT(1)PR;GEGPGEAGGPLT(1)PR;GEGPGEAGGPLT(1)PR;GEGPGEAGGPLT(1)PR ;;; 160.46 0.00022593 90162000 6851.4 6462.6 5726.64 5693.7 6548.52 6605.1 7649 9687.9 6366.64 6770.96 TRUE FALSE FALSE 6048.289278 6661.705046 6036.239481 5925.913696 6065.448726 6479.118722 7944.024492 10790.73138 6104.204404 6730.686029 0.898614087 0.98975127 0.896823809 0.880432347 0.901163522 0.962623824 1.180269657 1.603214194 0.90692158 1 12.71653784 -4.318196144 1.901393985 0.940430836 1.762383731 0.96276736 0.040781571 0.112573288 0.459072733 0.007216559 0.156002671 4.81E-05 4.318196144 0.821952895 EAPAEGEAAEPGS(ph)PTAAEGEAASAASSTSSPK ddPTM_HeLa_CUDC101_4h_R1 1 EAPAEGEAAEPGSPTAAEGEAASAASSTSSPK 32 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 EAPAEGEAAEPGS(0.724)PT(0.276)AAEGEAASAASSTSSPK 136.94 1.60E-17 36061000 7092 6547.8 5916.9 6508.7 6745.8 6699.9 8752.9 12474 6072.9 7217.8 TRUE FALSE FALSE 6260.686511 6749.529957 6236.785512 6774.152919 6248.175774 6572.11057 9090.502285 13893.98974 5822.572492 7174.868205 0.872585577 0.940718319 0.869254366 0.944150154 0.870841888 0.915990424 1.266992233 1.936480133 0.811523268 1 12.80873662 -4.316951386 2.101192195 0.926940998 2.146814284 0.968837923 0.056630527 0.071268029 0.377681641 0.008082721 0.15659727 4.82E-05 4.316951386 1.219873286 LGS(ph)PLAVDEALRR ddPTM_HeLa_CUDC101_4h_R1 4 LGSPLAVDEALRR 13 1 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 LGS(1)PLAVDEALRR;LGS(1)PLAVDEALRR;LGS(1)PLAVDEALRR;LGS(1)PLAVDEALRR ;;; 130.47 0.00059034 34122800 14247.1 12428.1 11105.2 11818.9 13141.2 12727 11183.1 9283 13657.2 11371 TRUE FALSE FALSE 12577.07654 12810.99503 11705.5807 12300.92583 12171.79986 12484.25368 11614.43591 10339.7392 13094.24444 11303.36479 1.1126843 1.13337889 1.035583733 1.088253459 1.076829784 1.104472333 1.027520224 0.914748784 1.158437747 1 13.46446468 -4.316611326 3.2176101 1.065710126 0.901784078 0.512489821 0.047861862 0.203908837 3.385236253 0.007004247 0.076678094 4.82E-05 4.316611326 -0.163926048 DYNPYNYSDSIS(ph)PFNK ddPTM_HeLa_CUDC101_4h_R1 2 DYNPYNYSDSISPFNK 16 0 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4X8;H7C5M8;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 DYNPYNYSDS(0.003)IS(0.997)PFNK;DYNPYNYSDS(0.087)IS(0.913)PFNK ; 248.75 8.54E-56 18238400 7450.1 6719.8 5248.6 6046.6 7278.9 7143.2 5760.9 3755.2 7209.2 7017.1 TRUE FALSE FALSE 6576.810572 6926.829073 5532.355192 6293.206484 6741.950049 7006.955361 5983.099843 4182.676789 6912.033725 6975.361977 0.942862979 0.993042239 0.793128043 0.902205004 0.966537661 1.004529282 0.857747578 0.599635804 0.990921152 1 12.76805237 -4.316547415 2.739600636 0.957071485 0.55413195 0.745866032 0.061180917 0.145179701 1.566726322 0.008995413 0.123447383 4.82E-05 4.316547415 -0.402939535 SES(ph)WER ddPTM_HeLa_CUDC101_4h_R1 1 SESWER 6 0 H0Y8X4;O43598;O43598-2 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 1 0 SES(1)WER 95.815 0.035974 97135000 2796.5 2176.2 2905.7 2831.5 3159.8 3618.3 4627.6 5785.3 2305.9 3032.9 TRUE FALSE FALSE 2468.698509 2243.246143 3062.790931 2946.980809 2926.707849 3549.286956 4806.088082 6443.875167 2210.849826 3014.860176 0.81884345 0.744063078 1.015898169 0.97748507 0.970760725 1.177264201 1.594132995 2.137371152 0.733317533 1 11.55787538 -4.315405389 1.040863494 0.906668154 2.715063848 0.949140346 0.09332306 0.251445974 0.224847154 0.014176519 0.49189089 4.84E-05 4.315405389 1.808395694 up AAKPGPAEAPS(ph)PT(ph)ASPSGDASPPATAPYDPR ddPTM_HeLa_CUDC101_4h_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 AAKPGPAEAPS(0.85)PT(0.832)AS(0.18)PS(0.063)GDAS(0.068)PPAT(0.006)APY(0.001)DPR 75.512 2.43E-05 35045000 2331.9 2065.5 2099.5 1876 2113.3 2093.7 2128.3 2282.1 2471.9 1950.6 TRUE FALSE FALSE 2058.558217 2129.135607 2213.005321 1952.511389 1957.406069 2053.766161 2210.389244 2541.885039 2370.007236 1938.997744 1.061660965 1.098059868 1.141314025 1.006969397 1.009493732 1.059189556 1.139964835 1.31092728 1.222284679 1 10.92109541 -4.315252346 1.81349769 1.04059518 1.38090578 0.450649891 0.071278575 0.288602637 1.034714075 0.006979597 0.160741213 4.84E-05 4.315252346 0.3403106 LFVTPPEGS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 LFVTPPEGSSR 11 0 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 LFVT(0.152)PPEGS(0.748)S(0.1)R 84.31 0.032877 16559000 4231.1 3836.6 4197 3859 4165.6 4176.7 3395.8 2243.7 4285.9 4045.9 TRUE FALSE FALSE 3735.136872 3954.801099 4423.902515 4016.3867 3858.311987 4097.036406 3526.777144 2499.113739 4109.233388 4021.834807 0.928714642 0.983332556 1.099971214 0.998645368 0.959341239 1.018698331 0.876907509 0.621386471 1.021731022 1 11.97363811 -4.314438815 2.559697555 0.980955238 0.567709298 0.856623205 0.046713303 0.129675468 1.162304312 0.007170498 0.109097775 4.85E-05 4.314438815 -0.413245939 VS(ph)TPVVK ddPTM_HeLa_CUDC101_4h_R1 1 VSTPVVK 7 0 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 0 VS(0.5)T(0.5)PVVK 88.177 0.035507 39066000 9981.2 8817.1 9526.2 8118.4 9723.6 8962.6 7718.5 4189.1 10391 9957.9 TRUE FALSE FALSE 8811.218867 9088.7444 10041.21519 8449.503443 9006.3094 8791.653338 8016.205131 4665.970211 9962.678582 9898.669968 0.890141695 0.918178344 1.014400442 0.853599875 0.909850458 0.888165114 0.809826487 0.47137345 1.006466385 1 13.27301898 -3.987397903 1.253670071 0.941030382 6.59E-15 0.887441922 0.0501484 0.636490118 0.537827168 0.007972969 0.907041202 0.000102944 3.987397903 -0.941030382 down KGDVVHCWYTGTLQDGTVFDTNIQTS(ph)AK ddPTM_HeLa_CUDC101_4h_R1 2 KGDVVHCWYTGTLQDGTVFDTNIQTSAK 28 1 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 1 0 KGDVVHCWYTGTLQDGTVFDTNIQT(0.099)S(0.901)AK;KGDVVHCWYTGTLQDGTVFDTNIQT(0.136)S(0.864)AK ; 107.18 5.71E-10 66517700 5339.6 4554.6 4528.7 4497.43 5343.7 4515.04 4253.01 3536.11 4497.5 4751.38 TRUE FALSE FALSE 4713.700182 4694.921827 4773.535221 4680.854635 4949.505897 4428.923135 4417.05002 3938.646469 4312.111146 4723.11858 0.998005894 0.994030056 1.010674439 0.991051687 1.047931745 0.937711611 0.935197782 0.833908021 0.91297965 1 12.20552404 -4.314405241 1.231875063 1.001275359 0.772550381 0.638306557 0.035227664 0.325561948 0.437926408 0.002884779 0.092011234 4.85E-05 4.314405241 -0.228724977 QDS(ph)LEPVLR ddPTM_HeLa_CUDC101_4h_R1 2 QDSLEPVLR 9 0 D6RDZ7;D6RD37;D6RAX8;D6RBL1;D6RDZ9;D6RCK9;Q99576-3;E7EWD5 D6RDZ7 TSC22D3 1 0 QDS(1)LEPVLR;QDS(1)LEPVLR ; 100.04 0.017708 4974300 4099.5 2605.7 2667.7 2383.1 2609.3 2582.7 3404.5 4250.9 3256.6 3332.9 TRUE FALSE FALSE 3618.962824 2685.978528 2811.923931 2480.293119 2416.817137 2533.439301 3535.812705 4734.805273 3122.36157 3313.075763 1.092327216 0.810720527 0.848735173 0.748637609 0.729478379 0.764678952 1.067229656 1.429126773 0.94243591 1 11.69395548 -4.314086314 3.606614355 0.954609533 1.459138379 0.559967722 0.135759805 0.185012821 4.171447856 0.023948061 0.227087281 4.85E-05 4.314086314 0.504528846 TGVTSTSDS(ph)EEEGDDQEGEKKR ddPTM_HeLa_CUDC101_4h_R1 2 TGVTSTSDSEEEGDDQEGEKKR 22 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 T(0.004)GVT(0.02)S(0.061)T(0.07)S(0.07)DS(0.776)EEEGDDQEGEKKR;T(0.001)GVT(0.019)S(0.019)T(0.083)S(0.065)DS(0.813)EEEGDDQEGEKKR ; 109.03 1.62E-05 30219000 3541.2 3447.1 3492.2 3644.5 4014.1 3686.1 3990.5 4552 3705.54 4179.8 TRUE FALSE FALSE 3126.105904 3553.301065 3680.998895 3793.138463 3717.98784 3615.793784 4144.414922 5070.18128 3552.796073 4154.938364 0.75238322 0.855199465 0.885933454 0.91292292 0.894835859 0.870240054 0.997467245 1.220278338 0.855077925 1 12.02061136 -4.313987639 2.063382631 0.880834505 1.29472145 0.763101869 0.058244342 0.347695656 1.747182578 0.012805402 0.256840017 4.85E-05 4.313987639 0.413886945 RMS(ph)ADMSEIEAR ddPTM_HeLa_CUDC101_4h_R1 4 RMSADMSEIEAR 12 1 Q9UG54;O43318-4;O43318-3;O43318-2;O43318 Q9UG54 DKFZp586F0420;MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 0 RMS(1)ADMSEIEAR;RMS(1)ADMSEIEAR;RMS(0.999)ADMS(0.001)EIEAR;RMS(1)ADMSEIEAR ;;; 191.63 4.60E-11 50900000 6595.8 6389.4 5775.7 6005.6 6482.55 5582.63 4641.09 2963.5 5266.52 5586.33 TRUE FALSE FALSE 5822.650323 6586.249841 6087.951813 6250.534326 6004.345202 5476.150634 4820.098396 3300.852861 5049.431816 5553.102261 1.048540086 1.186048722 1.096315452 1.125593233 1.081259613 0.986142588 0.868001015 0.594416005 0.909299267 1 12.43907825 -4.31308423 1.534159883 1.052471238 0.449101261 0.804378243 0.071025303 0.301494069 0.700316671 0.009723545 0.265081617 4.86E-05 4.31308423 -0.603369977 KQDDS(ph)PPRPIIGPALPPGFIK ddPTM_HeLa_CUDC101_4h_R1 2 KQDDSPPRPIIGPALPPGFIK 21 2 A0A0A0MRI1;Q8IXQ4-4;Q8IXQ4 A0A0A0MRI1 GPALPP1 GPALPP motifs-containing protein 1 1 0 KQDDS(1)PPRPIIGPALPPGFIK;KQDDS(1)PPRPIIGPALPPGFIK ; 59.585 0.0078607 321720000 7212 6664.4 6390 6305.3 6871.2 6749.6 6956.1 7540.2 7472.8 7407 TRUE FALSE FALSE 6366.620293 6869.722265 6735.462729 6562.457388 6364.325265 6620.862626 7224.399107 8398.545889 7164.768021 7362.942835 0.864684194 0.93301312 0.914778626 0.89128186 0.864372495 0.899214183 0.981183648 1.140650699 0.973084836 1 12.84606679 -4.312929684 2.775797025 0.922948141 1.168265547 0.723740277 0.041511945 0.203568833 2.267758893 0.007782292 0.106621087 4.86E-05 4.312929684 0.245317405 YQEQGGEAS(ph)PQSR ddPTM_HeLa_CUDC101_4h_R1 3 YQEQGGEASPQSR 13 0 B4DDD6;Q9UJU6-4;Q9UJU6-2;Q9UJU6-6;Q9UJU6-3 B4DDD6 DBNL Drebrin-like protein 1 0 YQEQGGEAS(0.988)PQS(0.012)R;YQEQGGEAS(0.999)PQS(0.001)R;YQEQGGEAS(0.948)PQS(0.052)R ;; 175.6 2.41E-07 61246000 6880.8 6122.49 6495.16 6574.8 6692.09 6745.72 5756.48 4392.95 7487.5 6872.2 TRUE FALSE FALSE 6074.243055 6311.11666 6846.307996 6842.948763 6198.427853 6617.05663 5978.509362 4893.025671 7178.862081 6831.323849 0.889175098 0.923849725 1.002193447 1.001701707 0.907353829 0.968634598 0.875161168 0.716263169 1.050874214 1 12.73794947 -4.31288532 2.233209805 0.951081282 0.670566009 0.699969488 0.049643343 0.240525852 1.48975708 0.006920804 0.126741126 4.87E-05 4.31288532 -0.280515272 LFVT(ph)PPEGSSR ddPTM_HeLa_CUDC101_4h_R1 2 LFVTPPEGSSR 11 0 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 LFVT(1)PPEGSSR;LFVT(0.949)PPEGS(0.025)S(0.025)R ; 151.13 0.0028079 249690000 9395.7 8850.5 7860.9 8492.9 9568.5 7853.8 6509.9 3906.3 8140.7 8320.8 TRUE FALSE FALSE 8294.350289 9123.173415 8285.884032 8839.277171 8862.650818 7704.00185 6760.989024 4350.977402 7805.1369 8271.307512 1.002785869 1.102990477 1.001762299 1.068667458 1.071493329 0.93141282 0.817402692 0.526032601 0.943640034 1 13.01389969 -4.312549513 1.476251462 1.018015098 0.363793175 0.916497086 0.046398726 0.190678737 0.401471518 0.006266845 0.176811011 4.87E-05 4.312549513 -0.654221922 S(ph)LSGSSPCPK ddPTM_HeLa_CUDC101_4h_R1 1 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.951)LS(0.013)GS(0.036)SPCPK 141.71 0.0010958 70830000 2672.1 2675.7 2222 2622.5 2484.3 2147.1 2727 3695.2 2883.4 2311.4 TRUE FALSE FALSE 2358.880489 2758.135146 2342.128041 2729.456885 2301.038138 2106.147645 2832.181303 4115.846631 2764.545032 2297.65169 1.026648425 1.200414822 1.019357308 1.18793327 1.001473874 0.916652273 1.232641708 1.791327489 1.203204578 1 11.1659444 -4.312212344 2.870414198 1.033628341 1.881453329 0.820723043 0.099803101 0.083013894 1.012100709 0.011681282 0.153193629 4.87E-05 4.312212344 0.847824987 SKFDS(ph)DEEEEDTENVEAASSGK ddPTM_HeLa_CUDC101_4h_R1 1 SKFDSDEEEEDTENVEAASSGK 22 1 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 S(0.401)KFDS(0.599)DEEEEDTENVEAASSGK 121.02 3.31E-07 264830000 8452.1 6771.2 6727 6393.6 7487.5 7281.9 7258.7 7558.5 6892.1 6896.2 TRUE FALSE FALSE 7461.357651 6979.812646 7090.681968 6654.358643 6935.162042 7143.00989 7538.67049 8418.929087 6608.004721 6855.181096 1.088426045 1.018180636 1.034353705 0.970705011 1.011667226 1.041987045 1.099704061 1.228111843 0.96394313 1 12.74297906 -4.311984358 1.961031978 1.032900854 1.274070465 0.751774621 0.036771036 0.291532474 1.276143335 0.005666981 0.121573015 4.88E-05 4.311984358 0.241169611 GTPAGTT(ph)PGASQAPK ddPTM_HeLa_CUDC101_4h_R1 1 GTPAGTTPGASQAPK 15 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 GTPAGT(0.015)T(0.985)PGASQAPK 137.46 0.00011265 0 2505.2 2073.2 2690.5 2275.8 2281.6 1950 2026.2 923.32 2786.8 2593.1 TRUE FALSE FALSE 2211.544254 2137.072835 2835.956568 2368.616961 2113.290914 1912.806999 2104.351213 1028.427017 2671.926924 2577.676126 0.857960483 0.829069569 1.10019895 0.918896264 0.81984346 0.74206646 0.816375336 0.39897449 1.036564252 1 11.33185529 -3.98657378 0.826225329 0.932270255 1.17E-17 0.72662786 0.096724113 1.458652035 0.534886901 0.01536324 1.377472031 0.00010314 3.98657378 -0.932270255 down S(ph)SSPTSYWK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPTSYWK 9 0 Q92614;A0A0D9SFK2;Q92614-2;Q92614-3;Q92614-4;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 S(0.333)S(0.333)S(0.333)PT(0.001)SYWK 119.22 0.0058853 28737000 7504.7 6660.1 6832.5 6091.4 6715.6 6492.8 6024.6 5341.7 6627.5 6242.7 TRUE FALSE FALSE 6625.010442 6865.289787 7201.885617 6339.833621 6220.203567 6368.960658 6256.97084 5949.777536 6354.311645 6205.568143 1.067591281 1.10631124 1.160552177 1.021636291 1.002358434 1.026329985 1.008283318 0.958780469 1.023969361 1 12.59934759 -4.311909785 0.929797824 1.04649701 0.92191985 0.295289112 0.046764848 2.549447015 1.735596966 0.00859737 0.313956938 4.88E-05 4.311909785 -0.124577161 T(ph)PTS(ph)SPASSPLVAK ddPTM_HeLa_CUDC101_4h_R1 1 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 2 0 T(0.966)PT(0.032)S(0.519)S(0.011)PAS(0.432)S(0.041)PLVAK 147.73 0.0011093 19211000 3831.9 2960.4 2619.7 2879.6 3711.3 3487.1 2627.1 1402.9 3079.8 2878.7 TRUE FALSE FALSE 3382.730491 3051.606415 2761.328906 2997.042535 3437.524793 3420.589377 2728.428127 1562.600465 2952.84934 2861.577364 1.182120928 1.066407099 0.964967413 1.047339335 1.201269215 1.195351005 0.953469985 0.546062631 1.031895687 1 11.4825949 -4.311790198 3.086722715 1.088861854 0.491572278 0.806071496 0.079437183 0.113661326 1.68747739 0.012959567 0.153689034 4.88E-05 4.311790198 -0.597289575 LDVTILS(ph)PSRK ddPTM_HeLa_CUDC101_4h_R1 1 LDVTILSPSRK 11 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 1 0 LDVT(0.004)ILS(0.892)PS(0.105)RK 123.26 0.0072378 165950000 2191.1 1784.2 1872.8 1472.3 2680.3 1961.2 1624.7 976.99 2299 1872.2 TRUE FALSE FALSE 1934.262579 1839.169087 1974.049233 1532.346758 2482.579609 1923.793378 1687.365223 1088.206592 2204.234247 1861.064071 1.039331536 0.988235234 1.06070998 0.823371308 1.333957088 1.033706151 0.906666917 0.584722799 1.184394606 1 10.86191201 -4.311528463 2.567639576 1.028598071 0.51848988 0.550441338 0.127956414 0.224810937 2.024093681 0.015278016 0.234627075 4.88E-05 4.311528463 -0.510108191 AQVPGPLT(ph)PEMEAR ddPTM_HeLa_CUDC101_4h_R1 3 AQVPGPLTPEMEAR 14 0 B8ZZS4;Q9H8Y5 B8ZZS4 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 AQVPGPLT(1)PEMEAR;AQVPGPLT(1)PEMEAR;AQVPGPLT(1)PEMEAR ;; 180.06 1.68E-07 72247600 9143.5 8158.9 7998.4 7323.8 8211.9 8637.6 8842.8 9900.4 9173.1 8302.8 TRUE FALSE FALSE 8071.712791 8410.266038 8430.817698 7622.49622 7606.124497 8472.852171 9183.869758 11027.42152 8794.980935 8253.414576 0.977984653 1.019004433 1.021494512 0.923556687 0.921573056 1.026587492 1.112735786 1.336104156 1.065617249 1 13.01077539 -4.311179397 1.748559526 0.985157891 1.432048863 0.860334494 0.042217833 0.174000401 0.563586283 0.005119002 0.124474522 4.88E-05 4.311179397 0.446890973 SEVDMLK(ac)IR ddPTM_HeLa_CUDC101_4h_R1 1 SEVDMLKIR 9 1 P07355;P07355-2;A6NMY6 P07355 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein 0 1 SEVDMLK(1)IR 111.46 0.0038345 1268500 432.83 393.19 299.58 385.84 432.68 379.23 217.96 333.03 377.9 384.94 FALSE TRUE FALSE 382.0943235 405.3037179 315.776201 401.5762229 400.7620584 371.9968196 226.3667902 370.940789 362.322802 382.6503598 0.998546882 1.059201194 0.825234298 1.049459938 1.04733224 0.972158552 0.591576055 0.969398772 0.946876941 1 8.579882946 -4.935441202 13.58245979 0.997609376 0.780597752 0.37741857 0.106124064 0.708536475 147.7948222 0.012625537 0.037889652 1.16E-05 4.935441202 -0.217011624 NYQQNYQNSES(ph)GEKNEGSESAPEGQAQQR ddPTM_HeLa_CUDC101_4h_R1 2 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 H0Y449;P67809;C9J5V9 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NYQQNY(0.001)QNS(0.442)ES(0.551)GEKNEGS(0.005)ES(0.002)APEGQAQQR;NYQQNY(0.038)QNS(0.157)ES(0.616)GEKNEGS(0.106)ES(0.083)APEGQAQQR ; 112.28 8.89E-11 318943000 4357.7 3665.4 3694.1 4032.5 4278.3 3958.5 4138.9 4565.6 4447.8 4186.4 TRUE FALSE FALSE 3846.897012 3778.326629 3893.81422 4196.96278 3962.698333 3882.998208 4298.538759 5085.329449 4264.459801 4161.499107 0.924401739 0.907924412 0.935675851 1.008521851 0.952228567 0.933076785 1.032930357 1.221994603 1.024741251 1 12.02288761 -4.311010448 2.566663195 0.958226849 1.262088009 0.816786735 0.037266004 0.132117782 1.187475226 0.005334492 0.082164218 4.89E-05 4.311010448 0.303861159 NSPNNISGISNPPGT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 NSPNNISGISNPPGTPR 17 0 Q9NW25;Q9BWW4-2;Q9BWW4-3;Q9BWW4;A0A087WVT6 Q9NW25 SSBP3 Single-stranded DNA-binding protein 3 1 0 NSPNNISGISNPPGT(1)PR;NSPNNISGISNPPGT(1)PR;NSPNNISGISNPPGT(1)PR;NSPNNISGISNPPGT(1)PR ;;; 318.94 3.75E-166 213824000 8978.5 6670.5 7330.9 6955.4 7415.2 7777 7857.7 8275.6 7439.5 8300.7 TRUE FALSE FALSE 7926.053841 6876.010199 7727.230629 7239.071276 6868.195469 7628.666682 8160.774121 9217.660853 7132.840661 8251.327067 0.960579283 0.833321736 0.936483376 0.877322062 0.832374649 0.924538152 0.989025651 1.11711253 0.864447695 1 13.01041045 -4.3109451 2.983488138 0.946274978 1.135772953 0.41652244 0.064012682 0.29444874 3.983967229 0.009943972 0.124221654 4.89E-05 4.3109451 0.189497976 AEGEWEDQEALDYFS(ph)DKES(ph)GKQK ddPTM_HeLa_CUDC101_4h_R1 1 AEGEWEDQEALDYFSDKESGKQK 23 2 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 AEGEWEDQEALDY(0.194)FS(0.904)DKES(0.903)GKQK 61.732 0.0043711 14848000 1447.9 1208.3 1401.4 1132.9 943.27 1208.6 1477.1 1906.2 1252.9 1581.2 TRUE FALSE FALSE 1278.179357 1245.526291 1477.163923 1179.104559 873.6868514 1185.547969 1534.072242 2123.194103 1201.254932 1571.794952 0.813197265 0.792422885 0.939794291 0.750164363 0.555852944 0.754263759 0.976000234 1.350808577 0.764256769 1 10.61819731 -4.310057903 3.225233494 0.858216983 1.395712026 0.617442698 0.125399945 0.184423368 3.085478564 0.02048145 0.230203524 4.90E-05 4.310057903 0.537495043 SEVSSDEDIQFR ddPTM_HeLa_CUDC101_4h_R1 2 SEVSSDEDIQFR 12 0 A0A2R8Y4F5;H0YFD6;P40939 A0A2R8Y4F5 HADHA "Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase" 0 0 ; ; 183.03 7.67E-10 11232400 3355.4 3052.4 2757 2853.8 2665.2 2924.9 2721.3 2578.7 3146.6 3051.4 FALSE FALSE TRUE 2962.085098 3146.440826 2906.051759 2970.190299 2468.593506 2869.112406 2826.261453 2872.248785 3016.895816 3033.250137 0.976538355 1.037316635 0.958065319 0.979210472 0.813844356 0.945887176 0.9317601 0.946921175 0.994608318 1 11.56664876 -5.968070688 24.99925498 0.98996587 0.911621244 0.500456706 0.039935457 124.860262 97759.58531 0.005603303 0.010156799 1.08E-06 5.968070688 -0.078344625 SVNFSLT(ph)PNEIK ddPTM_HeLa_CUDC101_4h_R1 1 SVNFSLTPNEIK 12 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.005)VNFS(0.055)LT(0.939)PNEIK 162.64 0.00041806 110620000 4325.8 3721.3 3525 2993.2 3726.4 4009.1 3105.1 1770.9 4272.6 3797.7 TRUE FALSE FALSE 3818.736281 3835.948842 3715.572163 3115.275634 3451.510896 3932.633097 3224.864747 1972.492098 4096.48162 3775.111112 1.011555996 1.016115481 0.984228557 0.82521429 0.914280612 1.04172645 0.854243664 0.522499084 1.085128755 1 11.88230339 -4.309803396 2.545348326 0.987365258 0.449740619 0.805494606 0.068505143 0.131065274 1.149774471 0.009172713 0.143701092 4.90E-05 4.309803396 -0.537624639 SREDS(ph)PELNPPPGIEDNR ddPTM_HeLa_CUDC101_4h_R1 1 SREDSPELNPPPGIEDNR 18 1 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 0 S(0.325)REDS(0.675)PELNPPPGIEDNR 53.96 0.034425 5592400 1156.7 1065.1 943.3 963.53 1172.9 1137.1 1324 1518.2 1257.4 1007.9 TRUE FALSE FALSE 1021.113379 1097.914469 994.2976513 1002.826918 1086.377504 1115.411712 1375.067124 1691.025751 1205.56944 1001.904966 1.019171892 1.095826955 0.992407149 1.000920199 1.084311926 1.113290931 1.372452648 1.68781053 1.203277238 1 9.968529955 -4.309630367 1.158975609 1.014952 1.983934826 0.895356242 0.067573512 0.139258088 0.160333819 0.00475111 0.159384121 4.90E-05 4.309630367 0.968982826 KEST(ph)S(ph)EQMPS(ph)FPEMVY(ph)YIQEK ddPTM_HeLa_CUDC101_4h_R1 1 KESTSEQMPSFPEMVYYIQEK 21 1 R4GMY1;J3KN16;Q5VYK3 R4GMY1 KIAA0368;ECM29 Proteasome-associated protein ECM29 homolog 4 0 KES(0.301)T(0.849)S(0.847)EQMPS(0.872)FPEMVY(0.612)Y(0.519)IQEK 40.349 0.0031155 0 158.36 72.261 61.543 161.27 149.03 138.85 104.84 0 178.57 133.38 TRUE FALSE FALSE 139.7972809 74.48727576 64.87020074 167.8472877 138.0363538 136.2016676 108.8837139 0 171.209269 132.5866498 1.054384292 0.561800723 0.489266459 1.265944104 1.041102962 1.027265322 0.821226828 0 1.291300966 1 7.050791707 -4.309325311 3.861661826 0.971619647 4.36E-15 0.575806405 0.246826437 0.116316957 3.191134381 0.032335078 0.287003002 4.91E-05 4.309325311 -0.971619647 SFDWGYEER ddPTM_HeLa_CUDC101_4h_R1 1 SFDWGYEER 9 0 P18615;P18615-3;A0A0A0MT02;A0A0G2JI50;E9PD43;A0A0A0MSN9 P18615 NELFE Negative elongation factor E 0 0 137.14 0.01245 16783000 2421 2355.5 2307 2220.7 2734 2253.2 2226 2148.9 2429.2 2027.5 FALSE FALSE TRUE 2137.21405 2428.070163 2431.723398 2311.269745 2532.318267 2210.223964 2311.857566 2393.52209 2329.067348 2015.44034 1.060420399 1.204734328 1.206546952 1.146781524 1.256459056 1.096645691 1.147073183 1.187592628 1.155612152 1 10.97687936 -7.421259261 3.12230164 1.024593229 1.176525712 0.334398403 0.058953602 0.097844275 1.759082713 0.007831224 0.008786078 3.79E-08 7.421259261 0.151932483 SGEVAEGEARS(ph)PSHK ddPTM_HeLa_CUDC101_4h_R1 4 SGEVAEGEARSPSHK 15 1 O00257 O00257 CBX4 E3 SUMO-protein ligase CBX4 1 0 SGEVAEGEARS(0.591)PS(0.409)HK;SGEVAEGEARS(0.798)PS(0.202)HK;SGEVAEGEARS(0.971)PS(0.029)HK;SGEVAEGEARS(0.961)PS(0.039)HK ;;; 95.554 0.0043582 76746000 13185.5 13237.6 15567.3 15479.3 19479.3 15624.2 12568.8 7369.96 12710.8 16539.3 TRUE FALSE FALSE 11639.91568 13645.43477 16408.91533 16110.61276 18042.35085 15326.19442 13053.58283 8208.926456 12186.85544 16440.92351 0.707984297 0.829967657 0.99805314 0.979909234 1.09740495 0.932197903 0.793968953 0.499298379 0.741251271 1 14.00500372 -4.308766697 2.827793284 0.895337812 0.449510141 0.531296104 0.116011889 0.277601585 3.23964515 0.019713893 0.268369485 4.91E-05 4.308766697 -0.445827671 RVS(ph)FADPIYQAGLADDIDR ddPTM_HeLa_CUDC101_4h_R1 1 RVSFADPIYQAGLADDIDR 19 1 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 RVS(0.846)FADPIY(0.154)QAGLADDIDR 51.857 0.032726 2732900 1155.9 931.51 806.26 1061.6 1088.9 865.16 916.5 410.32 1111.7 1148.2 TRUE FALSE FALSE 1020.407154 960.208719 849.8488544 1104.896637 1008.574016 848.6585145 951.849712 457.0291702 1065.875255 1141.370455 0.894019246 0.841277006 0.744586344 0.968043838 0.883651764 0.74354344 0.833953348 0.400421413 0.933855656 1 10.15655141 -3.98588109 0.951684205 0.923265379 4.78E-44 0.711756431 0.087373343 1.331421786 0.646741851 0.014588336 1.42793801 0.000103304 3.98588109 -0.923265379 down TPTSS(ph)PASS(ph)PLVAK ddPTM_HeLa_CUDC101_4h_R1 2 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 2 0 T(0.011)PT(0.108)S(0.108)S(0.772)PAS(0.122)S(0.878)PLVAK;T(0.158)PT(0.064)S(0.064)S(0.713)PAS(0.101)S(0.9)PLVAK ; 119.17 0.014564 86748000 19664.7 17335.1 16421.8 15928.5 20603.1 19726.9 15239.8 8928.5 18068.2 17820.3 TRUE FALSE FALSE 17359.63368 17869.17388 17309.61218 16578.13308 19083.25036 19350.64225 15827.60419 9944.88435 17323.42115 17714.30406 0.979978305 1.008742642 0.977154514 0.935861382 1.077279146 1.092373834 0.893492859 0.56140418 0.977934052 1 14.11262717 -4.308487507 3.168374721 0.998425733 0.518908936 0.892747172 0.046226123 0.067190371 1.070750151 0.006402217 0.074325861 4.91E-05 4.308487507 -0.479516797 FSS(ph)PIVK ddPTM_HeLa_CUDC101_4h_R1 1 FSSPIVK 7 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 FS(0.352)S(0.648)PIVK 95.815 0.026754 80020000 9840.1 8892.1 8462.9 7679.9 8273.5 7189.8 7085.5 2967.3 10164 10088 TRUE FALSE FALSE 8686.658395 9166.055061 8920.429973 7993.119517 7663.180388 7052.666544 7358.790108 3305.085438 9745.035618 10027.99613 0.866240701 0.91404653 0.889552595 0.797080435 0.764178635 0.703297693 0.733824586 0.329585831 0.971782946 1 13.29174572 -3.984732942 0.421770523 0.947971117 3.66E-28 0.851364263 0.070156712 1.793548281 0.182473891 0.017936915 0.894761574 0.000103578 3.984732942 -0.947971117 down FATHAAALS(ph)VR ddPTM_HeLa_CUDC101_4h_R1 2 FATHAAALSVR 11 0 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 FATHAAALS(1)VR;FAT(0.007)HAAALS(0.993)VR ; 91.307 0.014808 11886900 5972.2 5781.9 5156.6 5411.5 6607.6 5815.1 5301.6 4592.4 5134.4 5851.8 TRUE FALSE FALSE 5272.147769 5960.033486 5435.381394 5632.20436 6120.170512 5704.186656 5506.084488 5115.180253 4922.757859 5816.993233 0.906335551 1.024590067 0.934397063 0.968232923 1.052119242 0.980607408 0.946551641 0.879351247 0.84627189 1 12.50605791 -4.307152038 3.138265497 0.967303529 0.870533111 0.168393883 0.055863145 0.355256159 5.513696505 0.006677438 0.079075379 4.93E-05 4.307152038 -0.096770418 QAPGVGAVGGGS(ph)PEREEVGAGYNS(ph)EDEYEAAAAR ddPTM_HeLa_CUDC101_4h_R1 2 QAPGVGAVGGGSPEREEVGAGYNSEDEYEAAAAR 34 1 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 2 0 QAPGVGAVGGGS(0.778)PEREEVGAGY(0.557)NS(0.611)EDEY(0.054)EAAAAR;QAPGVGAVGGGS(0.932)PEREEVGAGY(0.473)NS(0.527)EDEY(0.068)EAAAAR ; 60.979 0.00068406 173918000 3347.6 3176.2 2958.8 3402.6 3793.4 2738 3191.5 3667.9 3518.2 3084 TRUE FALSE FALSE 2955.199403 3274.054957 3118.761678 3541.372735 3513.56844 2685.777212 3314.597224 4085.43891 3373.178307 3065.656231 0.963969597 1.067978505 1.017322701 1.155176076 1.14610647 0.876085578 1.081203166 1.332647434 1.10031199 1 11.58198021 -4.307148244 3.623142545 1.008665224 1.354901129 0.47765274 0.085341902 0.130899232 3.025424791 0.011545331 0.11224842 4.93E-05 4.307148244 0.346235905 GGAPDPSPGATATPGAPAQPSS(ph)PDARR ddPTM_HeLa_CUDC101_4h_R1 1 GGAPDPSPGATATPGAPAQPSSPDARR 27 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 GGAPDPSPGATATPGAPAQPS(0.345)S(0.654)PDARR 119.41 1.38E-10 16962000 2313.4 2240.9 2039.3 1853.3 2410 1972.1 2171.4 2457.7 2478.1 2176.1 TRUE FALSE FALSE 2042.226759 2309.939473 2149.550727 1928.885585 2232.219101 1934.485478 2255.151625 2737.474634 2375.951669 2163.15646 0.944095721 1.067855939 0.993710241 0.891699523 1.03192679 0.894288284 1.042528207 1.265500061 1.098372546 1 11.0789223 -4.306947155 3.319170149 0.975107987 1.291026758 0.603501135 0.065553355 0.101349359 1.836727499 0.006923811 0.075876719 4.93E-05 4.306947155 0.315918771 KHS(ph)PSPPPPTPTESR ddPTM_HeLa_CUDC101_4h_R1 3 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 KHS(0.998)PS(0.002)PPPPTPTESR;KHS(0.98)PS(0.02)PPPPTPTESR;KHS(0.999)PS(0.001)PPPPTPTESR ;; 111.73 0.001186 73307500 3116.45 2430.76 2941.19 2918.68 2762.09 2964.81 3067.87 3459.41 2670.57 3229.17 TRUE FALSE FALSE 2751.144455 2505.648834 3100.199628 3037.716386 2558.336124 2908.261189 3186.198774 3853.215251 2560.487974 3209.962753 0.857064292 0.780585018 0.965805483 0.946340073 0.796998694 0.906010883 0.992596805 1.200392511 0.797669061 1 11.64834084 -4.306430965 2.489478211 0.912815595 1.247795078 0.59705999 0.076852582 0.274034728 2.252471791 0.011305454 0.185413902 4.94E-05 4.306430965 0.334979483 SS(ph)SESLIFSGNQGR ddPTM_HeLa_CUDC101_4h_R1 1 SSSESLIFSGNQGR 14 0 Q8IZW8 Q8IZW8 TNS4 Tensin-4 1 0 S(0.036)S(0.795)S(0.168)ES(0.001)LIFSGNQGR 111.66 0.0031728 14482000 2526.4 2068.1 2197.9 1953.5 2301.7 2029.8 2332.8 2707.7 1949.3 2417.5 TRUE FALSE FALSE 2230.259222 2131.81571 2316.725122 2033.172174 2131.908177 1991.084947 2422.776877 3015.933623 1868.949029 2403.120602 0.928067954 0.887103089 0.964048629 0.846054989 0.887141567 0.828541416 1.008179479 1.255007185 0.777717534 1 11.23069334 -4.305960001 3.540757173 0.937559327 1.278616229 0.651109728 0.075027134 0.109324371 2.373904018 0.009079105 0.091521095 4.94E-05 4.305960001 0.341056902 SFGTEDRPTDRPIPPRDEVFEYIIFR ddPTM_HeLa_CUDC101_4h_R1 1 SFGTEDRPTDRPIPPRDEVFEYIIFR 26 3 Q8ND56-3;Q8ND56-2;Q8ND56;I3L4Q1;K7EMZ9;A0A140TA76 Q8ND56-3 LSM14A Protein LSM14 homolog A 0 0 38.746 0.03582 16006000 672.31 633.31 598.87 873.75 848.95 665.51 771.58 527.76 756.86 1171.6 FALSE FALSE TRUE 593.502841 652.8215304 631.2467237 909.3853017 786.3246498 652.8165056 801.3400991 587.8380651 725.6619105 1164.631271 0.509605792 0.560539242 0.542014232 0.78083538 0.675170476 0.560534928 0.688063354 0.504741784 0.623082969 1 10.18565755 -9.340446473 1.003324809 1.005890016 0.602911863 0.051660508 0.141321218 0.222206148 0.391190206 0.06522926 0.016155338 4.57E-10 9.340446473 -0.402978153 IHQDSES(ph)GDELSSSSTEQIR ddPTM_HeLa_CUDC101_4h_R1 3 IHQDSESGDELSSSSTEQIR 20 0 Q1RLN5;Q8IWW6-3;Q8IWW6-2;Q8IWW6-4;Q8IWW6 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 0 IHQDS(0.016)ES(0.984)GDELSSSSTEQIR;IHQDS(0.003)ES(0.997)GDELSSSSTEQIR;IHQDS(0.003)ES(0.997)GDELSSSSTEQIR ;; 250.45 6.10E-57 43084000 6251.2 4832 4904.5 5126 7302.1 5553.5 4903.4 3370.88 6490.6 6098.4 TRUE FALSE FALSE 5518.443812 4980.868193 5169.652105 5335.060436 6763.438631 5447.57624 5092.525781 3754.607354 6223.054721 6062.126446 0.910314864 0.821637133 0.852778666 0.880064196 1.115687489 0.898624648 0.840056014 0.61935484 1.026546506 1 12.56560823 -4.304600338 1.975122011 0.942342099 0.54260131 0.576659396 0.083232989 0.381159917 1.679037222 0.012110754 0.266256875 4.96E-05 4.304600338 -0.399740789 SFISPIPSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 SFISPIPSKR 10 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 0 1 ; SFISPIPSK(1)R;SFISPIPSK(1)R 157.34 0.00039918 13264800 3131.3 2124.2 1202.98 6894.4 4947 5844.1 6079.4 5090.1 490.61 284.6 FALSE TRUE FALSE 2764.253761 2189.644084 1268.016738 7175.583432 4582.069666 5732.633529 6313.884494 5669.536409 470.3868481 282.9071865 9.77088562 7.739796613 4.482094475 25.36373685 16.1963707 20.26330119 22.31786535 20.04027002 1.66268964 1 8.144185015 -6.385560837 0.306587274 0.993806003 26.61796613 0.732875017 4.431815353 0.856095515 0.173513611 3.165960154 8.108387146 4.12E-07 6.385560837 25.62416012 EIEMSVDDDDINSS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 EIEMSVDDDDINSSK 15 0 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 EIEMSVDDDDINS(0.008)S(0.991)K 81.904 0.018064 32894000 3909.1 3843.8 3706.2 3684.2 4097.4 4154.5 4435.3 5025 3928.3 4239.6 TRUE FALSE FALSE 3450.881224 3962.222922 3906.568383 3834.4576 3795.142965 4075.259834 4606.371007 5597.025688 3766.373811 4214.382671 0.818834333 0.94016686 0.926961002 0.909850362 0.900521681 0.966988561 1.093012042 1.328077236 0.893695259 1 12.0411056 -4.304296539 1.435845759 0.913956015 1.476207365 0.900181258 0.04279938 0.363510055 0.704834615 0.009588117 0.285200537 4.96E-05 4.304296539 0.562251349 SFLLK(ac)DSETSQR ddPTM_HeLa_CUDC101_4h_R1 2 SFLLKDSETSQR 12 1 P34897-3;P34897-2;P34897 P34897-3 SHMT2 "Serine hydroxymethyltransferase, mitochondrial" 0 1 ; SFLLK(1)DSETSQR;SFLLK(1)DSETSQR 151.13 0.00011108 1267870 835 739.24 517.19 521.19 849.64 718.56 680.71 601.99 798.27 767.79 FALSE TRUE FALSE 737.1225658 762.0151082 545.1508558 542.446381 786.9637499 704.8546652 706.9652127 670.5181083 765.3649727 763.2231509 0.965802157 0.998417183 0.714274528 0.710731036 1.031105711 0.923523696 0.926289005 0.878534813 1.002806285 1 9.575961123 KYES(ph)DEDSLGSSGR ddPTM_HeLa_CUDC101_4h_R1 1 KYESDEDSLGSSGR 14 1 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase 1 0 KY(0.083)ES(0.629)DEDS(0.284)LGS(0.004)S(0.001)GR 81.01 0.012897 9375400 1801.2 1655.4 1456.5 1696.5 1633 2018.6 2197.9 2800.8 2000.5 1975.1 TRUE FALSE FALSE 1590.066066 1706.400912 1535.242796 1765.690603 1512.536843 1980.098568 2282.673739 3119.631751 1918.038543 1963.352017 0.809873142 0.869126319 0.78194984 0.899324516 0.770384949 1.008529571 1.162641095 1.588931441 0.976920352 1 10.93910315 -4.303707511 1.518282481 0.886774281 1.821254874 0.892258616 0.075980792 0.275939824 0.615170059 0.01315408 0.375087032 4.97E-05 4.303707511 0.934480594 SSS(ph)APNVHINTIEPVNIDDLIR ddPTM_HeLa_CUDC101_4h_R1 2 SSSAPNVHINTIEPVNIDDLIR 22 0 H7C560;A0A2U3TZI2;A0A2R8Y8E0;P15056;A0A2R8Y679;A0A2R8Y492;A0A2R8YDP5 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 S(0.145)S(0.145)S(0.711)APNVHINTIEPVNIDDLIR;S(0.028)S(0.028)S(0.944)APNVHINTIEPVNIDDLIR ; 174.15 6.79E-10 193111000 6518 5238.1 4643 4789 6793.6 5556.3 5679.5 5958.2 5537.4 5854.9 TRUE FALSE FALSE 5753.969921 5399.479652 4894.014624 4984.31612 6292.449663 5450.322835 5898.560218 6636.457404 5309.146028 5820.074794 0.98864192 0.927733722 0.840885177 0.856400699 1.081163024 0.936469552 1.013485295 1.140270123 0.91221268 1 12.50682198 -4.303693501 2.956612119 0.971891787 1.160568141 0.372005088 0.071018159 0.314247933 4.128529883 0.010125299 0.132684302 4.97E-05 4.303693501 0.188676354 TDASSASSFLDS(ph)DELER ddPTM_HeLa_CUDC101_4h_R1 3 TDASSASSFLDSDELER 17 0 Q14498-2;Q14498;G3XAC6;Q14498-3;H0Y4X3;A0A0U1RQW2;A0A0U1RQH7 Q14498-2 RBM39 RNA-binding protein 39 1 0 TDASSASSFLDS(1)DELER;TDASSASSFLDS(1)DELER;TDASSASSFLDS(1)DELER ;; 252.47 2.65E-56 16403500 4474.69 3900.78 3491.55 3916.28 4006.08 4031.19 4396.26 5085.77 4333.38 4900.55 TRUE FALSE FALSE 3950.173621 4020.958408 3680.313754 4076.002826 3710.55946 3954.301767 4565.825221 5664.713499 4154.756242 4871.401311 0.810890618 0.825421301 0.755493855 0.836720805 0.761702685 0.811738043 0.937271419 1.162850921 0.852887286 1 12.25012112 -4.303392891 3.209449578 0.870550319 1.191781452 0.628332468 0.072647843 0.217392881 3.590001888 0.013993816 0.163554992 4.97E-05 4.303392891 0.321231134 SSPGSVAAS(ph)PSGGGGR ddPTM_HeLa_CUDC101_4h_R1 1 SSPGSVAASPSGGGGR 16 0 Q9BXB5-2;Q9BXB5 Q9BXB5-2 OSBPL10 Oxysterol-binding protein-related protein 10 1 0 SSPGSVAAS(1)PSGGGGR 218.34 2.35E-32 18290000 1737.6 1223 1203.1 1413.9 1558.4 1384.3 1408.6 1486.3 1086.7 1287.3 TRUE FALSE FALSE 1533.921162 1260.67918 1268.143225 1471.564953 1443.439937 1357.896784 1462.930174 1655.494384 1041.905766 1279.643082 1.198710158 0.985180319 0.991013231 1.149980783 1.128001985 1.061152756 1.14323298 1.29371573 0.814215917 1 10.32152575 -4.303074926 2.539698392 1.085284367 1.328070558 0.277381854 0.10924341 0.394080805 3.403728991 0.012094126 0.196265647 4.98E-05 4.303074926 0.242786191 (ac)AEDEPDAKS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 AEDEPDAKSPK 11 1 A0A0A0MSQ2;F8W689;P48382-2;P48382;F8WDU3;F8WFE4;F2Z2G0;F6S3S0;A0A0A0MT34;A0A0A0MSM9;F6X9D6;F6R6G4;F6UE82 A0A0A0MSQ2 RFX5 DNA-binding protein RFX5 1 0 AEDEPDAKS(1)PK;AEDEPDAKS(1)PK ; 51.726 0.026551 201703000 11154.3 10264.2 11465.4 11102.1 10361.3 10957.4 9104.1 6764.4 10634.9 10894.4 TRUE FALSE FALSE 9846.809863 10580.42784 12085.2542 11554.89163 9596.967542 10748.40585 9455.248187 7534.431953 10196.52492 10829.59962 0.909249668 0.976991597 1.115946538 1.066973113 0.886179349 0.992502606 0.873093052 0.695725808 0.941542188 1 13.40269229 -4.302892952 1.920531323 0.974384461 0.623099265 0.646503537 0.065793579 0.391482159 1.597104343 0.010337272 0.236160014 4.98E-05 4.302892952 -0.351285196 MISTPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 MISTPSPK 8 0 Q53F19;Q53F19-2 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 0 MIST(0.006)PS(0.994)PK;MIS(0.007)T(0.007)PS(0.986)PK ; 112.11 0.010631 271100000 12474.8 11400.8 11394.5 10511.7 10941 10727.1 11619.6 13442.6 12091.3 11545.3 TRUE FALSE FALSE 11012.52285 11752.04513 12010.52114 10940.41256 10133.90423 10522.49844 12067.77186 14972.85125 11592.8915 11476.62804 0.959560841 1.023998085 1.046520031 0.953277611 0.883003631 0.916863246 1.051508494 1.304638539 1.010130454 1 13.4864112 -4.302086673 3.130798826 0.975979779 1.339621801 0.813711806 0.047375796 0.100094641 1.541525014 0.006917391 0.084275048 4.99E-05 4.302086673 0.363642022 SSPS(ph)PEVVKPK ddPTM_HeLa_CUDC101_4h_R1 4 SSPSPEVVKPK 11 1 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 S(0.044)S(0.192)PS(0.764)PEVVKPK;S(0.005)S(0.019)PS(0.976)PEVVKPK;SS(0.007)PS(0.993)PEVVKPK;S(0.012)S(0.008)PS(0.98)PEVVKPK ;;; 92.295 0.012191 162512000 15238.5 14087.8 15811.9 15096.5 16911.3 15736.5 16100.1 17276.3 16594.1 17701.5 TRUE FALSE FALSE 13452.26613 14521.82842 16666.73914 15712.20052 15663.78709 15436.35248 16721.08625 19242.96416 15910.08417 17596.21069 0.764497901 0.825281572 0.947177744 0.892930916 0.89017956 0.877254356 0.950266313 1.093585687 0.904176726 1 14.10297716 -4.301877493 2.206299752 0.885874093 1.137350356 0.520499532 0.059864759 0.519732071 3.059736365 0.012580415 0.246055224 4.99E-05 4.301877493 0.251476263 DTAAVVS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 DTAAVVSR 8 0 Q6WKZ4;E7EX40;Q6WKZ4-2;Q6WKZ4-3 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 0 DTAAVVS(1)R 102.06 0.016955 24974000 3135.8 2663.5 2811.1 2709.6 2465.3 2859.6 2176.4 1182.4 1969.2 2159.7 TRUE FALSE FALSE 2768.226278 2745.559278 2963.076569 2820.1092 2283.439731 2805.057894 2260.344477 1316.999637 1888.028743 2146.854008 1.289433872 1.278875633 1.380194721 1.313600827 1.063621337 1.306589961 1.052863617 0.613455611 0.879439745 1 11.06800837 -4.301470814 3.154361928 1.183607823 0.553279203 0.560375216 0.152707372 0.1736017 2.73011302 0.02105835 0.254649994 4.99E-05 4.301470814 -0.63032862 AKVPAQANGTPT(ph)TK ddPTM_HeLa_CUDC101_4h_R1 1 AKVPAQANGTPTTK 14 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 AKVPAQANGT(0.199)PT(0.607)T(0.193)K 76.24 0.039394 13738000 2741.2 2382.4 2623.6 2454.2 2611.6 2421 1917.6 1037.5 2519.1 1977.9 TRUE FALSE FALSE 2419.880691 2455.79892 2765.439752 2554.292884 2418.947471 2374.823459 1991.562474 1155.604806 2415.261632 1966.135363 1.23078031 1.249048751 1.406535788 1.299143961 1.230305663 1.207863662 1.012932534 0.587754449 1.228431001 1 10.94114694 -4.300793657 2.539993433 1.169695199 0.491059197 0.745678174 0.110201985 0.242179737 2.085477168 0.02059847 0.33797963 5.00E-05 4.300793657 -0.678636003 DSHS(ph)PDLQLPTPEVIPSSGSK ddPTM_HeLa_CUDC101_4h_R1 1 DSHSPDLQLPTPEVIPSSGSK 21 0 H3BPE1;H3BQK9;H0Y6T5;H0Y4F5 H3BPE1 MACF1 1 0 DS(0.241)HS(0.759)PDLQLPTPEVIPSSGSK 112.55 1.19E-05 19096000 3926 2849.3 3300.8 3260.7 3300.2 3118.7 2311.6 1347 3352.4 3991 TRUE FALSE FALSE 3465.800231 2937.083556 3479.251232 3393.68544 3056.750821 3059.215994 2400.759186 1500.337035 3214.212653 3967.261355 0.87360018 0.740330241 0.87699068 0.855422705 0.770493937 0.771115316 0.605142685 0.37817953 0.810184247 1 11.95392773 -3.980744102 0.397954113 0.94579519 1.56E-41 0.755204062 0.080624575 2.053172598 0.18835494 0.020821368 0.965933498 0.000104534 3.980744102 -0.94579519 down TGSS(ph)SPPGGPPKPGSQLDSMLGSLQSDLNK ddPTM_HeLa_CUDC101_4h_R1 2 TGSSSPPGGPPKPGSQLDSMLGSLQSDLNK 30 1 F5GZ78;A0A1B0GTU4;P49023;P49023-2;P49023-3;P49023-4 F5GZ78 PXN Paxillin 1 0 T(0.024)GS(0.101)S(0.452)S(0.409)PPGGPPKPGS(0.01)QLDS(0.003)MLGS(0.001)LQSDLNK;T(0.041)GS(0.125)S(0.4)S(0.4)PPGGPPKPGS(0.029)QLDS(0.004)MLGS(0.001)LQSDLNK ; 67.871 0.00052535 464389000 4042 3555 3438.3 3199.3 4191.3 3412.9 3679 3864.1 3817 3970.3 TRUE FALSE FALSE 3568.202887 3664.525336 3624.184898 3329.781283 3882.116149 3347.804619 3820.900262 4303.973525 3659.661644 3946.684479 0.904101381 0.928507297 0.918285948 0.843690774 0.983639855 0.848257477 0.968129143 1.09052891 0.927274948 1 11.94642547 -4.300710601 4.013095296 0.937026834 1.098928878 0.495954396 0.049537625 0.158815866 5.001343852 0.007729459 0.068173798 5.00E-05 4.300710601 0.161902044 VS(ph)PPASPT(ph)LEVELGSAELPLQGAVGPELPPGGGHGR ddPTM_HeLa_CUDC101_4h_R1 1 VSPPASPTLEVELGSAELPLQGAVGPELPPGGGHGR 36 0 Q7Z6J0 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 2 0 VS(0.893)PPAS(0.289)PT(0.559)LEVELGS(0.259)AELPLQGAVGPELPPGGGHGR 52.381 0.01021 10939000 309.7 172.97 275.02 200.92 316.12 192.5 300.96 461.52 284.02 264.7 TRUE FALSE FALSE 273.3974355 178.2990007 289.8884131 209.1143861 292.8004574 188.8283832 312.568128 514.0575713 272.3125754 263.1255526 1.039037953 0.677619482 1.10171137 0.79473234 1.112778499 0.717636054 1.18790488 1.953658876 1.034914978 1 8.039607548 -4.300456191 3.350588466 0.974390662 2.043657133 0.796878546 0.153362773 0.083621753 1.560467846 0.019286157 0.215448597 5.01E-05 4.300456191 1.069266471 RLS(ph)ASSTGSTR ddPTM_HeLa_CUDC101_4h_R1 3 RLSASSTGSTR 11 1 A0A2R8Y5E4;A0A2R8YFK2;A0A2R8Y6M6;A0A2R8Y4C2;A0A2R8YFS8;A0A2R8Y8C4;A0A2R8Y5C9;A0A2R8Y596;P56945-4;P56945-5;P56945-8;P56945;P56945-7;P56945-3;P56945-2;P56945-6 A0A2R8Y5E4 BCAR1 Breast cancer anti-estrogen resistance protein 1 1 0 RLS(0.98)AS(0.013)S(0.006)T(0.001)GSTR;RLS(0.941)AS(0.046)S(0.01)T(0.003)GSTR;RLS(0.727)AS(0.172)S(0.08)T(0.019)GS(0.001)TR ;; 120.53 0.0084442 114565000 5983.03 5349.48 6988.68 7696.24 6745.55 5992.51 4848.08 2689.68 5969.08 5773.76 TRUE FALSE FALSE 5281.708293 5514.291138 7366.50918 8010.125933 6247.944216 5878.212856 5035.07207 2995.862299 5723.031996 5739.417419 0.92025164 0.960775413 1.283494237 1.395633973 1.088602511 1.024182844 0.877279295 0.521980208 0.997145107 1 12.48668859 -4.300410905 2.224432977 1.027716427 0.417005651 0.551439866 0.149207602 0.416425844 2.499862305 0.0247161 0.481910625 5.01E-05 4.300410905 -0.610710776 DGSGDS(ph)HPDFPEDADIDLKDVDK ddPTM_HeLa_CUDC101_4h_R1 2 DGSGDSHPDFPEDADIDLKDVDK 23 1 Q08752 Q08752 PPID Peptidyl-prolyl cis-trans isomerase D 1 0 DGS(0.068)GDS(0.932)HPDFPEDADIDLKDVDK;DGS(0.356)GDS(0.644)HPDFPEDADIDLKDVDK ; 54.74 0.0092905 13797500 9310.4 7789.6 7181.3 7535.4 8287.3 8494.7 8410.9 8888.9 9027.6 8632.9 TRUE FALSE FALSE 8219.049026 8029.588343 7569.5428 7842.726183 7675.96239 8332.677751 8735.31123 9900.776446 8655.478507 8581.551127 0.957757975 0.935680301 0.882071631 0.913905431 0.894472605 0.970999022 1.017917519 1.153728073 1.008614687 1 13.06702273 -4.300384354 2.101891084 0.958130588 1.197669006 0.702718883 0.04088562 0.32377898 1.669971038 0.00678899 0.141693443 5.01E-05 4.300384354 0.239538418 GYYS(ph)PGIVSTR ddPTM_HeLa_CUDC101_4h_R1 1 GYYSPGIVSTR 11 0 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 GYYS(0.996)PGIVS(0.004)TR 147.58 0.00087867 32745000 3906.8 2887 2820.8 3288.2 3488.5 3577.5 2701.6 1442.4 3598.5 2801.4 TRUE FALSE FALSE 3448.850826 2975.945048 2973.30098 3422.307009 3231.160305 3509.265148 2805.801617 1606.596986 3450.168307 2784.737148 1.238483434 1.068662818 1.067713332 1.228951541 1.160310698 1.260178236 1.007564257 0.576929491 1.238956542 1 11.44332544 -4.300335024 3.308755983 1.12835547 0.524612585 0.792370933 0.088387305 0.113087656 2.036149317 0.014366904 0.163422041 5.01E-05 4.300335024 -0.603742885 ELTIGS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ELTIGSK 7 0 R4GN98;P06703 R4GN98 S100A6 Protein S100;Protein S100-A6 1 0 ELTIGS(1)K 87.806 0.03593 9423700 3559.4 2790.9 2170.8 2567.1 2738.9 3209 3493.7 4441 3405.8 3055.7 TRUE FALSE FALSE 3142.172528 2876.884321 2288.160014 2671.797434 2536.856804 3147.793672 3628.453179 4946.545489 3265.411482 3037.524561 1.034451727 0.947114752 0.753297617 0.879596981 0.835172442 1.036302294 1.194542828 1.628479175 1.075023894 1 11.56868036 -4.300169563 1.838926325 0.969951513 1.806366277 0.826754145 0.095962573 0.266316402 0.965219566 0.015373822 0.372135009 5.01E-05 4.300169563 0.836414765 GGPASVPS(ph)SSPGTSVK ddPTM_HeLa_CUDC101_4h_R1 3 GGPASVPSSSPGTSVK 16 0 O43237;O43237-2;J3KRZ2;J3KRI4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 GGPASVPS(0.529)S(0.332)S(0.135)PGT(0.003)S(0.001)VK;GGPASVPS(0.435)S(0.282)S(0.282)PGTSVK;GGPASVPS(0.535)S(0.389)S(0.069)PGT(0.007)SVK ;; 215.96 4.41E-24 178968000 17555.2 14944.1 15171.5 14562.6 15839.4 14462.7 12068 6848.2 16370.6 16721.3 TRUE FALSE FALSE 15497.40607 15404.51001 15991.71718 15156.52577 14670.95902 14186.84809 12533.4668 7627.771407 15695.79694 16621.84096 0.932351964 0.926763169 0.962090614 0.911843989 0.882631416 0.853506427 0.75403602 0.458900517 0.944287517 1 14.02079256 -3.98006109 0.834712069 0.960543706 6.18E-18 0.962281836 0.028943436 0.522954057 0.194267079 0.005602908 0.515234042 0.000104698 3.98006109 -0.960543706 down SSGTPGCSSGTERPQS(ph)PGSSK ddPTM_HeLa_CUDC101_4h_R1 2 SSGTPGCSSGTERPQSPGSSK 21 1 Q8IYD8-2;Q8IYD8-3;Q8IYD8 Q8IYD8-2 FANCM Fanconi anemia group M protein 1 0 S(0.005)S(0.005)GT(0.066)PGCS(0.019)S(0.016)GT(0.014)ERPQS(0.822)PGS(0.034)S(0.019)K;SSGTPGCS(0.002)S(0.002)GT(0.003)ERPQS(0.936)PGS(0.04)S(0.017)K ; 70.295 0.0026539 38883000 5812.6 4874.1 5590.5 5309.9 5077.3 4422.7 3647.3 2131.27 3632.1 3336.9 TRUE FALSE FALSE 5131.255839 5024.265244 5892.73934 5526.460673 4702.757694 4338.344366 3787.977583 2373.885162 3482.383301 3317.05197 1.546932603 1.514677879 1.776498949 1.666075998 1.41775219 1.307891587 1.141971129 0.71566113 1.049842852 1 11.6956859 -4.300090953 1.843930156 1.363293334 0.541046523 0.44601017 0.235272355 0.742048421 2.708194964 0.04229644 1.021296953 5.01E-05 4.300090953 -0.822246811 VNPHKVS(ph)PASSVDSNIPSSQGYKK ddPTM_HeLa_CUDC101_4h_R1 1 VNPHKVSPASSVDSNIPSSQGYKK 24 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 VNPHKVS(0.944)PAS(0.038)S(0.008)VDS(0.009)NIPSSQGYKK 58.914 0.0031592 38014000 1224.6 1016.3 1147.8 1217.9 1385.2 1136.2 927.43 534.22 1316.9 1004.6 TRUE FALSE FALSE 1081.054244 1047.610998 1209.85354 1267.571226 1283.016556 1114.528878 963.2012858 595.0334454 1262.616825 998.6245945 1.08254318 1.049053873 1.211519871 1.269317052 1.284783654 1.116063918 0.964527903 0.595852985 1.264355827 1 9.963798628 -4.299990061 2.660493063 1.090468813 0.520411979 0.673134905 0.112225556 0.216817863 2.118455401 0.016905832 0.261522879 5.01E-05 4.299990061 -0.570056834 AS(ph)LTLEEK ddPTM_HeLa_CUDC101_4h_R1 2 ASLTLEEK 8 0 A0A0U1RQQ9;Q6P3W7 A0A0U1RQQ9 SCYL2 SCY1-like protein 2 1 0 AS(1)LTLEEK;AS(0.986)LT(0.014)LEEK ; 99.973 0.018867 14147600 4140.3 3903 3652.4 4092 4473.5 3906.2 3221.5 1980.48 3904.5 3566.3 TRUE FALSE FALSE 3654.98031 4023.246804 3849.859792 4258.889447 4143.498817 3831.695743 3345.754334 2205.929838 3743.554857 3545.087489 1.03099862 1.134879412 1.085970319 1.201349603 1.168800158 1.080846595 0.943772007 0.62224976 1.055983772 1 11.79160552 -4.299396693 2.612283033 1.056184408 0.553304579 0.80959199 0.067678193 0.179048921 1.662076177 0.011854948 0.188584295 5.02E-05 4.299396693 -0.502879829 S(ph)DDMFTFHGPGK ddPTM_HeLa_CUDC101_4h_R1 1 SDDMFTFHGPGK 12 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 S(0.971)DDMFT(0.029)FHGPGK 89.231 0.014432 3437800 3326.1 2557.4 2402.7 2998.9 3242.5 2947 2500 1725.8 2722.6 2766 TRUE FALSE FALSE 2936.2196 2636.190463 2532.59723 3121.208104 3003.307235 2890.790885 2596.425837 1922.258096 2610.373276 2749.547709 1.067891854 0.958772403 0.921095939 1.135171466 1.09229137 1.051369604 0.94431016 0.699117928 0.94938279 1 11.4249786 -4.299041039 2.565879954 1.032042221 0.644228286 0.690051847 0.064660934 0.177355579 1.566344227 0.00873245 0.142575202 5.02E-05 4.299041039 -0.387813934 NDVLPLSNS(ph)VPEDVGK ddPTM_HeLa_CUDC101_4h_R1 1 NDVLPLSNSVPEDVGK 16 0 Q96EQ0;D6RFW1 Q96EQ0 SGTB Small glutamine-rich tetratricopeptide repeat-containing protein beta 1 0 NDVLPLS(0.177)NS(0.823)VPEDVGK 128.99 0.00010662 0 1457.1 1007 821.46 957.42 1247.7 1060.3 1669 2866.8 1317.9 1210.9 TRUE FALSE FALSE 1286.300947 1038.024476 865.8706124 996.4677259 1155.659657 1040.076544 1733.373889 3193.144924 1263.575604 1203.697513 1.068624744 0.862363231 0.719342362 0.827838984 0.960091422 0.864068034 1.440041099 2.652780196 1.049745132 1 10.23325718 -4.298942908 2.430608563 0.96995334 2.959704035 0.953507573 0.115536507 0.084121643 0.640454692 0.019129693 0.335750196 5.02E-05 4.298942908 1.989750696 up AQTLPTSVVTITSESS(ph)PGKR ddPTM_HeLa_CUDC101_4h_R1 2 AQTLPTSVVTITSESSPGKR 20 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 AQTLPTSVVTIT(0.001)S(0.01)ES(0.056)S(0.933)PGKR;AQTLPTSVVTITS(0.005)ES(0.047)S(0.948)PGKR ; 200.57 8.97E-18 3688500000 6099.8 5302.7 4699.2 5195.5 5700.5 4955.8 5287.9 5790.4 5687.5 5168.3 TRUE FALSE FALSE 5384.790691 5466.069902 4953.252966 5407.394947 5279.985472 4861.276372 5491.856074 6449.55573 5453.058843 5137.558722 1.048122461 1.063943051 0.96412581 1.052522266 1.027722652 0.946223028 1.0689622 1.255373628 1.061410514 1 12.32686726 -4.298903535 3.533429809 1.020017586 1.274523685 0.768292947 0.038508545 0.082408778 1.793981005 0.004982804 0.052181662 5.02E-05 4.298903535 0.254506099 APETDDSFS(ph)DVDCHSNQEDTGCK ddPTM_HeLa_CUDC101_4h_R1 1 APETDDSFSDVDCHSNQEDTGCK 23 0 Q68D20 Q68D20 PMS2CL Protein PMS2CL 1 0 APETDDS(0.074)FS(0.926)DVDCHS(0.001)NQEDTGCK 111.27 4.90E-06 8108900 2914.1 2124.5 2051 2149 2005.5 1982.7 1493.6 886 2263.7 475.51 TRUE FALSE FALSE 2572.513615 2189.953327 2161.883264 2236.645509 1857.558261 1944.883301 1551.208652 986.8586587 2170.389328 472.6816454 5.44238102 4.633040754 4.573656043 4.731822212 3.929829471 4.11457335 3.281719668 2.087787136 4.591651377 1 8.884725034 -4.298837987 3.648615874 3.587979894 1.975950073 0.102400188 1.221620669 0.613189895 14.65914302 0.249379795 2.50321091 5.03E-05 4.298837987 -1.612029821 VKEPS(ph)VQEATSTSDILK ddPTM_HeLa_CUDC101_4h_R1 2 VKEPSVQEATSTSDILK 17 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VKEPS(0.97)VQEAT(0.027)S(0.002)T(0.001)SDILK;VKEPS(0.997)VQEAT(0.002)S(0.001)TSDILK ; 122.34 0.00016828 110103000 9502.2 7911.1 8199.5 8447.5 9194.1 8736 9774.8 12131.5 8614.4 10326.6 TRUE FALSE FALSE 8388.36652 8154.831614 8642.789772 8792.025563 8515.86956 8569.375355 10151.81731 13512.50092 8259.310786 10265.17692 0.817167262 0.794417054 0.841952344 0.856490407 0.829588192 0.834800551 0.988956877 1.316343695 0.804595074 1 13.32547087 -4.298433676 2.830658508 0.884213584 1.375623505 0.823449231 0.064017353 0.1576692 1.826326147 0.011903613 0.170312384 5.03E-05 4.298433676 0.491409922 DASVPLIDVTNLPT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 DASVPLIDVTNLPTPR 16 0 Q96A65;Q96A65-2 Q96A65 EXOC4 Exocyst complex component 4 1 0 DASVPLIDVTNLPT(1)PR;DASVPLIDVT(0.015)NLPT(0.985)PR;DASVPLIDVT(0.009)NLPT(0.991)PR;DASVPLIDVTNLPT(1)PR ;;; 234.12 1.55E-42 38208000 10934.9 8893.2 8124.8 9152.3 10340.4 10458.3 8265 4983.61 9254.5 9308.5 TRUE FALSE FALSE 9653.127598 9167.188951 8564.051264 9525.570354 9577.609293 10258.82535 8583.783819 5550.924018 8873.025593 9253.132628 1.04322806 0.990711937 0.925529938 1.029442756 1.035066683 1.10868673 0.927662465 0.599896731 0.958921259 1 13.17572615 -4.297961761 3.254250932 1.018433366 0.557535653 0.866418155 0.04819849 0.067331887 1.156448522 0.006269298 0.073894175 5.04E-05 4.297961761 -0.460897713 SLS(ph)PVAAPPLREPR ddPTM_HeLa_CUDC101_4h_R1 1 SLSPVAAPPLREPR 14 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 S(0.19)LS(0.81)PVAAPPLREPR 60.541 0.040579 197950000 4087.1 3875.3 3573.4 3467.8 4055.7 3809.7 3941.2 4367.5 4175.9 4123.4 TRUE FALSE FALSE 3608.016334 3994.6934 3766.588813 3609.231873 3756.519091 3737.03632 4093.213404 4864.678546 4003.767635 4098.873833 0.880245765 0.974583157 0.918932606 0.88054232 0.916475901 0.9117227 0.998619028 1.186832956 0.976796993 1 12.00101187 -4.297886619 2.683724275 0.93479555 1.225434076 0.797524492 0.038557441 0.172075319 1.717439067 0.006901544 0.106620946 5.04E-05 4.297886619 0.290638526 KPPNLEGIVFPGESGLAPGS(ph)YKK ddPTM_HeLa_CUDC101_4h_R1 1 KPPNLEGIVFPGESGLAPGSYKK 23 2 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 0 KPPNLEGIVFPGES(0.035)GLAPGS(0.694)Y(0.27)KK 56.416 0.0058193 12826000 1665.6 1336.1 1657.7 1620.8 1690.3 1473.1 1832.3 2500 1453.3 1917.2 TRUE FALSE FALSE 1470.360893 1377.263657 1747.320276 1686.90323 1565.609937 1445.003072 1902.972425 2784.589895 1393.394359 1905.796409 0.771520445 0.722670927 0.916845193 0.885143461 0.821499048 0.758214815 0.998518213 1.461116141 0.731134948 1 10.89617829 -4.29739705 3.141060991 0.86695066 1.526802815 0.807350163 0.091790815 0.118802469 1.843920728 0.014740764 0.183144119 5.04E-05 4.29739705 0.659852154 ARQEEGADAS(ph)EEDPTPAGEEDVKDAR ddPTM_HeLa_CUDC101_4h_R1 1 ARQEEGADASEEDPTPAGEEDVKDAR 26 2 Q86X53;E5RHA3;H0YB25 Q86X53 ERICH1 Glutamate-rich protein 1 1 0 ARQEEGADAS(0.97)EEDPT(0.03)PAGEEDVKDAR 65.801 0.00069536 0 725.63 540.34 448.8 619.66 788.11 497.35 607.37 658.56 817.83 604.37 TRUE FALSE FALSE 640.5727514 556.9872349 473.0634855 644.9324132 729.9726954 487.8638774 630.7964644 733.5278084 784.1187012 600.7751804 1.0662437 0.927114257 0.787421819 1.073500428 1.215051352 0.812057311 1.049970913 1.220968895 1.305178254 1 9.230681402 -4.297374049 4.474746477 1.009238138 1.229431606 0.123022043 0.152558212 0.207581658 9.242166176 0.016301101 0.129613436 5.04E-05 4.297374049 0.220193468 SFSTALYGESDL ddPTM_HeLa_CUDC101_4h_R1 3 SFSTALYGESDL 12 0 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ;; ;; 141.52 0.0066516 21065000 10966.6 9769.6 8180.7 8351.6 9341.1 8952.5 9053.4 8828.7 9188.5 9156 FALSE FALSE TRUE 9681.111772 10070.5898 8622.973387 8692.214347 8652.025663 8781.745978 9402.592671 9833.723521 8809.746141 9101.539705 1.063678464 1.106471006 0.947419191 0.955026801 0.950611209 0.964863777 1.033077147 1.080446149 0.967940198 1 13.15189491 -6.736530311 24.99937069 1.036640667 0.986268731 0.156971564 0.051908594 308.679332 309797.9899 0.008344466 0.011798139 1.83E-07 6.736530311 -0.050371935 DTVIIVSEPS(ph)EDEES(ph)QGLPTMAR ddPTM_HeLa_CUDC101_4h_R1 1 DTVIIVSEPSEDEESQGLPTMAR 23 0 D6RAY8;Q9H4L7;Q9H4L7-2 D6RAY8 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 DTVIIVS(0.155)EPS(0.922)EDEES(0.607)QGLPT(0.316)MAR 83.776 0.00042861 8037300 3670.6 2902.9 2667.9 2839.7 2754.9 2576 2169.3 1555.3 3371.8 2376.6 TRUE FALSE FALSE 3240.337832 2992.334908 2812.134744 2955.51524 2551.676516 2526.867092 2252.970628 1732.349065 3232.812977 2362.463878 1.371592541 1.266616153 1.190339785 1.25103087 1.08009123 1.069589726 0.953652942 0.733280657 1.368407368 1 11.20607656 -4.297341398 0.947952825 1.191053096 0.509194816 0.676554026 0.108454685 1.221937838 0.856832082 0.022274044 0.841685454 5.04E-05 4.297341398 -0.68185828 RLPSS(ph)PASPSPK ddPTM_HeLa_CUDC101_4h_R1 2 RLPSSPASPSPK 12 1 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0;Q9H4G0-4;H7C2K6;X6RC15 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 RLPS(0.006)S(0.98)PAS(0.013)PS(0.002)PK;RLPS(0.005)S(0.994)PAS(0.001)PSPK ; 164.53 0.00011893 58472000 7632.3 7148.5 6994.4 6780.1 7465.4 6667.8 7216.4 8512.4 6413.9 6621.1 TRUE FALSE FALSE 6737.653364 7368.736812 7372.538421 7056.621784 6914.692315 6540.622824 7494.738965 9481.417208 6149.516327 6581.717403 1.023692291 1.119576603 1.120154204 1.072155085 1.050590886 0.993756253 1.13872087 1.440568871 0.934333085 1 12.68424837 -4.296953903 2.621480333 1.033274762 1.50637498 0.828452155 0.054778065 0.120060554 1.121522001 0.007458176 0.119537876 5.05E-05 4.296953903 0.473100218 SNSLSEQLAINT(ph)SPDAVK ddPTM_HeLa_CUDC101_4h_R1 1 SNSLSEQLAINTSPDAVK 18 0 Q5T1M5;Q5T1M5-2;Q5T1M5-3 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 SNSLS(0.218)EQLAINT(0.774)S(0.008)PDAVK 199.61 3.53E-16 10514000 3114.5 2257.8 2242 2435 3030.4 2497.5 2766.5 3235.3 2684.8 2807.5 TRUE FALSE FALSE 2749.423031 2327.360142 2363.209302 2534.309825 2806.853429 2449.864349 2873.204832 3603.593474 2574.131408 2790.800865 0.985173491 0.833939881 0.846785355 0.908094109 1.005751956 0.877835599 1.029526996 1.291239916 0.922362982 1 11.44646347 -4.296921591 3.34666409 0.959531823 1.322956606 0.719679508 0.066432544 0.134575794 2.505866597 0.010396576 0.118508867 5.05E-05 4.296921591 0.363424784 SAS(ph)QSSLDKLDQELK ddPTM_HeLa_CUDC101_4h_R1 2 SASQSSLDKLDQELK 15 1 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 S(0.035)AS(0.552)QS(0.206)S(0.206)LDKLDQELK;S(0.061)AS(0.785)QS(0.111)S(0.043)LDKLDQELK ; 65.287 0.028934 62005000 6266.4 5788.4 5497.5 4705.2 5772.1 5990.9 6683.4 8456.7 5653.7 7277.1 TRUE FALSE FALSE 5531.862091 5966.733743 5794.711479 4897.098394 5346.303683 5876.633564 6941.180977 9419.376545 5420.652093 7233.815486 0.764722587 0.824839085 0.80105879 0.676973086 0.739071061 0.812383669 0.959546313 1.302131159 0.749348958 1 12.82054108 -4.296910978 2.701175063 0.846220902 1.371423562 0.720929548 0.091700446 0.230017364 2.334424141 0.016820052 0.258829331 5.05E-05 4.296910978 0.52520266 SGS(ph)LDDSFSDFQELPASSK ddPTM_HeLa_CUDC101_4h_R1 2 SGSLDDSFSDFQELPASSK 19 0 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-6 SYNRG Synergin gamma 1 0 S(0.152)GS(0.752)LDDS(0.095)FS(0.002)DFQELPASSK;S(0.128)GS(0.839)LDDS(0.033)FSDFQELPASSK ; 268.6 2.71E-106 5616700 3681.3 3083 2817.8 3088.7 3057.9 3250.1 3374.8 3742.4 3217.9 3659.7 TRUE FALSE FALSE 3249.783594 3177.983576 2970.138791 3214.670537 2832.324809 3188.109758 3504.967166 4168.419689 3085.2568 3637.931942 0.89330522 0.873568727 0.816436052 0.883653292 0.778553545 0.876352227 0.96345045 1.14582124 0.848079857 1 11.82890284 -4.296808615 3.171100392 0.912921538 1.171070761 0.564408842 0.065941288 0.228761694 3.64774133 0.011290066 0.138837522 5.05E-05 4.296808615 0.258149223 SGAAAEK(ac)ADSR ddPTM_HeLa_CUDC101_4h_R1 2 SGAAAEKADSR 11 1 Q9H967 Q9H967 WDR76 WD repeat-containing protein 76 0 1 ; SGAAAEK(1)ADSR;SGAAAEK(1)ADSR 110.08 0.0054778 915290 397.965 572.77 731.72 415.912 564.83 653.73 502.04 442.87 561.85 793.75 FALSE TRUE FALSE 351.316146 590.4163648 771.2789965 432.8746891 523.1636162 641.2611894 521.403851 493.2845307 538.6903052 789.0287397 0.445251394 0.748282458 0.977504314 0.548617138 0.663047605 0.812722221 0.660817312 0.625179421 0.682725835 1 9.62393404 -9.612177278 1.428800779 0.999362119 0.659470408 0 0.168100281 0.339260209 1.247055619 0.109092749 0.025282328 2.44E-10 9.612177278 -0.339891712 NHAGS(ph)PGCEESDAGK ddPTM_HeLa_CUDC101_4h_R1 1 NHAGSPGCEESDAGK 15 0 P42575 P42575 CASP2 Caspase-2;Caspase-2 subunit p18;Caspase-2 subunit p13;Caspase-2 subunit p12 1 0 NHAGS(0.998)PGCEES(0.002)DAGK 167.28 8.91E-06 2550900 795.87 901.94 1295.5 1127.9 959.17 928.34 650.71 175.05 898.03 993.02 TRUE FALSE FALSE 702.5793251 929.7277023 1365.538649 1173.900637 888.41394 910.6334612 675.8081027 194.9769844 861.0128233 987.1134729 0.711751328 0.941865072 1.383365425 1.189225625 0.900011969 0.92252156 0.684630614 0.197522362 0.872253137 1 9.947072128 -4.296403883 1.928942969 0.934097265 0.004155563 0.637855144 0.180710317 0.451913822 1.844100315 0.031082857 0.727463959 5.05E-05 4.296403883 -0.929941702 SGADPVTSVGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 SGADPVTSVGKR 12 1 Q92994-9;Q92994-3;Q92994-7;Q92994-8;Q92994-5;Q92994 Q92994-9 BRF1 Transcription factor IIIB 90 kDa subunit 0 1 ; SGADPVTSVGK(1)R;SGADPVTSVGK(1)R 190.57 3.27E-08 48066000 5746 6744.1 6275.4 6213.4 6027.5 5372.6 5023 3873.3 5702.5 6499.7 FALSE TRUE FALSE 5072.46259 6951.877727 6614.667106 6466.809309 5582.863333 5270.126606 5216.738793 4314.220816 5467.440536 6461.039495 0.785084597 1.075968926 1.023777538 1.000893016 0.864081289 0.815677819 0.807414782 0.667728594 0.846216857 1 12.65755058 -4.612893814 1.124265372 0.925877092 0.642488267 0.502127248 0.087051115 0.848019938 1.272716149 0.016461211 0.243451547 2.44E-05 4.612893814 -0.283388825 FMEQSRS(ph)PSVSPS(ph)KQPVSTSSK ddPTM_HeLa_CUDC101_4h_R1 1 FMEQSRSPSVSPSKQPVSTSSK 22 2 H0Y7Q2;Q96JG6-3;Q96JG6 H0Y7Q2 CCDC132 Coiled-coil domain-containing protein 132 2 0 FMEQS(0.468)RS(0.53)PS(0.301)VS(0.301)PS(0.393)KQPVS(0.004)T(0.001)S(0.001)SK 68.587 0.021944 16768000 2331.3 2244.9 2174 1981.1 2452.7 2004.4 2172.4 2482.9 2235.2 2124 TRUE FALSE FALSE 2058.028548 2314.062708 2291.533016 2061.897821 2271.769207 1966.16941 2256.190196 2765.5433 2143.06411 2111.366354 0.974737778 1.096002456 1.085331786 0.97657037 1.075971114 0.931230815 1.068592474 1.30983583 1.015012912 1 11.04396121 -4.295556746 3.327595293 1.004717517 1.339847972 0.726402235 0.052482846 0.104698209 1.918059134 0.007339266 0.084946756 5.06E-05 4.295556746 0.335130455 SGAMVK(ac)MAAAGGGGGGGR ddPTM_HeLa_CUDC101_4h_R1 2 SGAMVKMAAAGGGGGGGR 18 1 P14866 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 1 ; SGAMVK(1)MAAAGGGGGGGR;SGAMVK(1)MAAAGGGGGGGR 132.51 0.002128 2742900 450.23 496.63 628.55 470.89 404.16 597.71 361.47 348.28 599.83 541.99 FALSE TRUE FALSE 397.4547219 511.9305816 662.5313143 490.0949296 374.345922 586.3096776 375.412019 387.9267874 575.1047535 538.7662194 0.737712773 0.950190571 1.229719478 0.909661579 0.694820701 1.088245062 0.696799475 0.720028045 1.067447685 1 9.073515586 -4.714711032 24.99812705 0.905020349 0.708412841 0.236519828 0.157769472 158.6534873 84872.07647 0.022649858 0.08474752 1.93E-05 4.714711032 -0.196607509 AAPEAS(ph)SPPAS(ph)PLQHLLPGK ddPTM_HeLa_CUDC101_4h_R1 4 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 0 AAPEAS(0.5)S(0.5)PPAS(0.999)PLQHLLPGK;AAPEAS(0.732)S(0.269)PPAS(0.999)PLQHLLPGK;AAPEAS(0.634)S(0.445)PPAS(0.92)PLQHLLPGK;AAPEAS(0.574)S(0.498)PPAS(0.928)PLQHLLPGK ;;; 95.742 0.00092706 436423300 12018.5 12026 9957.9 10804.4 13345.3 12026.2 11936.3 11767.8 13278 12587 TRUE FALSE FALSE 10609.70965 12396.50681 10496.2542 11245.05013 12360.84381 11796.82027 12396.68709 13107.39878 12730.67522 12512.13196 0.847953784 0.990758956 0.838886149 0.89873174 0.987908683 0.942830551 0.990773365 1.047575171 1.017466508 1 13.61104001 -4.295540558 0.964905839 0.924742724 1.107884902 0.226551334 0.05989213 2.048166925 1.494404828 0.010185197 0.384778955 5.06E-05 4.295540558 0.183142178 TTT(ph)LSGTAPAAGVVPSR ddPTM_HeLa_CUDC101_4h_R1 1 TTTLSGTAPAAGVVPSR 17 0 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;P27816-4;H0Y2V1;H7C4C5;B5MEG9;F8W9U4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 TT(0.006)T(0.982)LS(0.012)GTAPAAGVVPSR 152.94 0.00045264 28303000 1329.2 1267.6 1186.9 984.25 1199.6 1308.6 991.41 577.18 1220.2 1363.1 TRUE FALSE FALSE 1173.393191 1306.653254 1251.067404 1024.391969 1111.107898 1283.640635 1029.649016 642.8838382 1169.90284 1354.992221 0.865977806 0.964325281 0.923302278 0.756013174 0.820010537 0.947341701 0.759892935 0.474455741 0.863401887 1 10.40406885 -3.977761312 1.224262645 0.919661348 6.78E-18 0.740997205 0.07342793 1.05792169 0.838691228 0.012374982 1.448685197 0.000105254 3.977761312 -0.919661348 down HAS(ph)PILPITEFSDIPR ddPTM_HeLa_CUDC101_4h_R1 3 HASPILPITEFSDIPR 16 0 P42167;G5E972;H0YJH7 P42167 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 HAS(0.999)PILPIT(0.001)EFSDIPR;HAS(1)PILPITEFSDIPR;HAS(0.917)PILPIT(0.007)EFS(0.076)DIPR ;; 105.01 0.0016677 42887000 8240.7 6279.1 5402.69 5826.2 4841.92 5259.3 4385.54 2429.65 4912.3 7085.6 TRUE FALSE FALSE 7274.737638 6472.551628 5694.775764 6063.817619 4484.741208 5158.987615 4554.691747 2706.231535 4709.812915 7043.454536 1.0328366 0.91894561 0.80852027 0.860915278 0.636724662 0.732451326 0.646655945 0.384219352 0.668679395 1 12.78206747 -4.295512324 0.347984221 1.035525038 0.006164243 0.499918251 0.13180336 1.435205109 0.123611898 0.02423711 0.618519316 5.06E-05 4.295512324 -1.029360795 EPDATPPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 EPDATPPSPR 10 0 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 EPDATPPS(1)PR;EPDATPPS(1)PR ; 155.33 0.00013092 42367000 4804.6 3260.8 4029.9 3886 3463.7 3475.9 3113.6 2295.6 3570.9 3874.8 TRUE FALSE FALSE 4241.412071 3361.261383 4247.768584 4044.487877 3208.189752 3409.602999 3233.692595 2556.921825 3423.705991 3851.752517 1.101164224 0.872657672 1.102814515 1.050038355 0.832916896 0.885208222 0.839537997 0.663833362 0.88886967 1 11.91129929 -4.295507972 0.559295354 1.043570231 0.454145037 0.529304615 0.090372747 1.515468522 0.325825626 0.015171876 0.573981281 5.06E-05 4.295507972 -0.589425193 AMKPPGGESSNLFGS(ph)PEEATPSSRPNR ddPTM_HeLa_CUDC101_4h_R1 3 AMKPPGGESSNLFGSPEEATPSSRPNR 27 2 A6NGP5;Q9H910;Q9H910-3;H3BMV3;H3BMM8;B4E1P3 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 0 AMKPPGGESSNLFGS(1)PEEATPSSRPNR;AMKPPGGESSNLFGS(1)PEEATPSSRPNR;AMKPPGGES(0.001)S(0.002)NLFGS(0.758)PEEAT(0.051)PS(0.058)S(0.131)RPNR ;; 105.56 1.22E-07 86650000 5784.9 5465.6 5823 5189.9 5786.3 5571.9 4662.8 2623.22 6011.9 6301.5 TRUE FALSE FALSE 5106.802791 5633.988658 6137.808994 5401.566555 5359.456177 5465.625291 4842.645758 2921.836761 5764.086937 6264.018398 0.815259865 0.899420835 0.979851687 0.862316521 0.855593939 0.872542982 0.773089325 0.466447666 0.920189976 1 12.61287273 -3.975100589 1.225316502 0.908926065 1.95E-13 0.866995397 0.051749926 0.943172702 0.745632567 0.010799163 1.279662321 0.000105901 3.975100589 -0.908926065 down SNVSSPAT(ph)PTASSSSSTT(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 SNVSSPATPTASSSSSTTPTR 21 0 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 SNVS(0.001)S(0.001)PAT(0.98)PT(0.018)AS(0.002)S(0.005)S(0.013)S(0.038)S(0.015)T(0.042)T(0.848)PT(0.036)R 170.04 4.18E-08 5984500 1458 1334.9 1611 1597.5 1434.2 1395.7 1237.1 676.18 1700.4 1521.7 TRUE FALSE FALSE 1287.09545 1376.026687 1698.095533 1662.652955 1328.401923 1369.079348 1284.815361 753.153598 1630.308792 1512.648861 0.850888454 0.909680179 1.122597304 1.099166501 0.878195831 0.905087349 0.849381105 0.497903788 1.077784035 1 10.56286141 -3.971977826 1.434247566 0.950071999 5.78E-10 0.700148803 0.093961562 1.163787185 1.248162342 0.014454606 1.928325498 0.000106665 3.971977826 -0.950071998 down SPSLSPS(ph)PPSPLEK ddPTM_HeLa_CUDC101_4h_R1 1 SPSLSPSPPSPLEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SPSLS(0.016)PS(0.542)PPS(0.442)PLEK 109.99 0.0035773 312940000 4518.3 3945 4125.5 3830.4 4519 4429.7 4696.5 5484.8 4457.1 5259 TRUE FALSE FALSE 3988.671723 4066.540774 4348.537009 3986.620268 4185.642373 4345.210853 4877.645578 6109.167462 4273.376451 5227.719234 0.76298507 0.777880485 0.831822983 0.762592651 0.800663193 0.831186729 0.933035108 1.168610476 0.81744567 1 12.35196594 -4.29535937 2.702841576 0.855897474 1.216678077 0.669691796 0.070863946 0.289390781 2.936085321 0.01446467 0.224176482 5.07E-05 4.29535937 0.360780603 AS(ph)LEDAPVDDLTRK ddPTM_HeLa_CUDC101_4h_R1 2 ASLEDAPVDDLTRK 14 1 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 AS(1)LEDAPVDDLTRK;AS(1)LEDAPVDDLTRK ; 128.74 0.00049817 23434000 5814.9 6108.2 6076 6132.8 6230.9 5818.7 5135.4 4000.4 6485.3 5684.2 TRUE FALSE FALSE 5133.286237 6296.386402 6404.486939 6382.922092 5771.258921 5707.717992 5333.474098 4455.789366 6217.973189 5650.390126 0.908483507 1.11432773 1.133459247 1.129642724 1.02139123 1.010145824 0.94391254 0.788580835 1.100450243 1 12.46413477 -4.295323612 2.511834983 0.999516691 0.751500202 0.401144967 0.082006055 0.448150924 3.712211278 0.013342068 0.228336527 5.07E-05 4.295323612 -0.248016489 SPAGSQQQFGYSPGQQQT(ph)HPQGSPR ddPTM_HeLa_CUDC101_4h_R1 2 SPAGSQQQFGYSPGQQQTHPQGSPR 25 0 Q8TAP9 Q8TAP9 MPLKIP M-phase-specific PLK1-interacting protein 1 0 SPAGSQQQFGYSPGQQQT(0.534)HPQGS(0.466)PR;SPAGSQQQFGYSPGQQQT(0.561)HPQGS(0.439)PR ; 146.28 1.44E-10 34803000 2325.1 2110.9 2144.9 2123.98 2715.5 2133.5 2301.08 2600 2450.2 2472.3 TRUE FALSE FALSE 2052.555303 2175.934327 2260.859782 2210.605085 2515.182975 2092.807042 2389.833426 2895.97349 2349.201719 2457.59465 0.835188709 0.885391872 0.919948203 0.89949947 1.023432801 0.851567219 0.972427828 1.178377195 0.955894708 1 11.26303126 -4.294584577 3.393946971 0.919433003 1.202902198 0.646311246 0.056744058 0.157105095 3.049684865 0.009646068 0.10922134 5.07E-05 4.294584577 0.283469195 SGDAAIVDMVPGKPMCVESFSDYPPLGR ddPTM_HeLa_CUDC101_4h_R1 2 SGDAAIVDMVPGKPMCVESFSDYPPLGR 28 1 Q5VTE0;P68104;A0A087WVQ9 Q5VTE0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 0 0 ; ; 99.838 1.01E-08 115170000 3095.5 2668.2 2603.8 2212.1 2794.4 2888.6 2629.8 2712.4 3111.2 2324.2 FALSE FALSE TRUE 2732.650182 2750.404079 2744.569304 2302.319 2588.262679 2833.504768 2731.232267 3021.168652 2982.955019 2310.375555 1.182773154 1.190457574 1.187932108 0.996512881 1.120277902 1.226426051 1.182159438 1.307652622 1.291112613 1 11.17391167 -13.52287875 0.21586061 0.104433094 1.199447205 0 0.118012929 35.75083122 0.449346163 13.51218531 0.065754611 3.00E-14 13.52287875 1.095014112 AYSS(ph)PSTTPEAR ddPTM_HeLa_CUDC101_4h_R1 2 AYSSPSTTPEAR 12 0 G3V2R1;Q9UPU9-2;Q9UPU9-3;Q9UPU9 G3V2R1 SAMD4A Protein Smaug homolog 1 1 0 AYS(0.033)S(0.895)PS(0.043)T(0.026)T(0.003)PEAR;AYS(0.014)S(0.74)PS(0.099)T(0.099)T(0.048)PEAR ; 161.93 9.74E-05 74604000 6987.4 6140.3 6239.5 6127.1 5993.1 6556.3 6194.7 6264.9 6507.1 6220.1 TRUE FALSE FALSE 6168.347564 6329.475365 6576.826243 6376.989622 5551.000953 6431.249501 6433.631654 6978.070892 6238.874584 6183.102569 0.997613657 1.023673034 1.063677364 1.031357567 0.897769508 1.040133077 1.040518345 1.128571104 1.00902007 1 12.59411522 -4.294186004 1.781958253 1.002397263 1.163459898 0.436861608 0.041458327 0.560675888 1.853368433 0.005781789 0.148253918 5.08E-05 4.294186004 0.161062636 SGDEGSEDEAPSGED ddPTM_HeLa_CUDC101_4h_R1 2 SGDEGSEDEAPSGED 15 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 0 ; ; 177.78 1.18E-06 10336400 6989.6 7011.3 6872 6860.8 8318.6 8119.9 8320.1 9231.8 7879.9 8928.6 FALSE FALSE TRUE 6170.289684 7227.309843 7243.521107 7140.613079 7704.953451 7965.026436 8641.009044 10282.7108 7555.087187 8875.49229 0.695205345 0.814299602 0.816126122 0.804531495 0.868115615 0.897417988 0.973580818 1.158551037 0.851230212 1 13.11561143 -4.168683269 1.185500652 0.843173098 1.354805286 0.664017964 0.070904949 1.374953674 1.37439955 0.016840214 0.909759763 6.78E-05 4.168683269 0.511632188 LGDVS(ph)PTQIDVSQFGSFKEDTK ddPTM_HeLa_CUDC101_4h_R1 2 LGDVSPTQIDVSQFGSFKEDTK 22 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 LGDVS(0.939)PT(0.061)QIDVSQFGSFKEDTK;LGDVS(0.575)PT(0.421)QIDVS(0.003)QFGSFKEDTK ; 117.96 7.68E-07 188140000 4450.1 3872.9 4048.6 4083.3 4955.3 4249.8 4601.1 5372.1 5060.5 5151.4 TRUE FALSE FALSE 3928.466024 3992.219458 4267.479562 4249.834624 4589.757391 4168.742146 4778.565968 5983.638149 4851.904048 5120.759244 0.767164758 0.779614754 0.833368522 0.829922756 0.896304078 0.81408673 0.933175285 1.168506049 0.947497005 1 12.32214202 -4.294158721 3.123924768 0.867996892 1.203191638 0.639253929 0.069589973 0.214687546 3.275916833 0.01322007 0.168414187 5.08E-05 4.294158721 0.335194746 TEPLT(ph)PNPASK ddPTM_HeLa_CUDC101_4h_R1 1 TEPLTPNPASK 11 0 H3BTW3;Q3L8U1-2;Q3L8U1-3;Q3L8U1 H3BTW3 CHD9 Chromodomain-helicase-DNA-binding protein 9 1 0 T(0.029)EPLT(0.971)PNPASK 122.34 0.018026 6252800 2489.6 2440.3 2530.5 1887.4 2992.4 2764.7 2163.4 1294.6 2635.5 2611.6 TRUE FALSE FALSE 2197.772862 2515.482751 2667.306484 1964.37633 2771.656614 2711.967954 2246.843063 1441.972031 2526.863574 2596.066087 0.846578164 0.968959443 1.027441673 0.756674239 1.067637156 1.044645191 0.865479917 0.55544504 0.973343316 1 11.34211139 -4.293387591 3.537518809 0.940625382 0.522240771 0.634299603 0.09122803 0.134923298 2.962671285 0.013188569 0.142091146 5.09E-05 4.293387591 -0.418384611 SGDETPGSEVPGDKAAEEQGDDQDSEK ddPTM_HeLa_CUDC101_4h_R1 1 SGDETPGSEVPGDKAAEEQGDDQDSEK 27 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 0 108.77 8.87E-08 8016600 740.23 688.42 929.5 883.93 928.23 879.02 936.47 558.38 817.42 848.15 FALSE FALSE TRUE 653.4613615 709.6294042 979.7515816 919.9804861 859.7563222 862.254158 972.5899616 621.9437222 783.7256016 843.1051661 0.775065066 0.841685513 1.162075173 1.091181175 1.019749797 1.02271246 1.153580835 0.737682257 0.929570394 1 9.719568789 -6.781296856 24.99030044 0.886905685 1.038553182 0.247488206 0.123105811 265.2195106 333773.329 0.021387443 0.028129533 1.65E-07 6.781296856 0.151647497 GEAGT(ph)PVAAGTTAAAIPR ddPTM_HeLa_CUDC101_4h_R1 2 GEAGTPVAAGTTAAAIPR 18 0 A0A0C4DGH3;Q9Y6R0;M0QXQ4 A0A0C4DGH3 NUMBL Numb-like protein 1 0 GEAGT(1)PVAAGTTAAAIPR;GEAGT(0.997)PVAAGT(0.002)T(0.001)AAAIPR ; 144.17 0.00036731 11181900 3217.3 2520.1 2716.8 2693.9 2624.2 2835.79 2299.02 1238.84 2762.5 3091 TRUE FALSE FALSE 2840.172971 2597.741294 2863.678426 2803.768886 2430.617994 2781.70203 2387.693972 1379.864538 2648.628581 3072.614595 0.924350544 0.845449767 0.932000528 0.912502626 0.791058533 0.905320842 0.777088664 0.449084809 0.862011326 1 11.5852511 -3.971396696 0.954943942 0.943128348 4.93E-42 0.80364683 0.064272581 0.955718193 0.458667807 0.010273835 1.057691983 0.000106808 3.971396696 -0.943128348 down SGDWVCPNPSCGNMNFAR ddPTM_HeLa_CUDC101_4h_R1 2 SGDWVCPNPSCGNMNFAR 18 0 Q92804-2;Q92804;A0A075B7D9;A0A075B7F4 Q92804-2 TAF15 TATA-binding protein-associated factor 2N 0 0 ; ; 105.17 0.0041969 21211500 2007.77 1874.09 1610.54 1717.17 2400.05 2081.24 1590.05 1847.69 2126.92 287.45 FALSE FALSE TRUE 1772.422244 1931.828492 1697.610664 1787.203615 2223.003093 2041.543815 1651.378761 2058.023561 2039.247457 285.7402346 6.202914499 6.760785698 5.941097747 6.254644598 7.779804255 7.144754456 5.779300781 7.202428331 7.136717936 1 8.158560384 -9.130160041 0.512312694 7.89E-23 6.853373185 0 1.987654331 0.246121422 0.09567822 0.833820551 0.154650189 7.41E-10 9.130160041 6.853373185 SGEHDFGAAFDGDGDR ddPTM_HeLa_CUDC101_4h_R1 3 SGEHDFGAAFDGDGDR 16 0 A0A3B3ITK7;P36871;P36871-2;P36871-3 A0A3B3ITK7 PGM1 Phosphoglucomutase-1 0 0 ;; ;; 189.33 3.97E-11 66554300 9884.1 6080.5 6141.1 5759.4 8402.7 7897.6 6862.3 6087.4 7930.4 9257.6 FALSE FALSE TRUE 8725.500781 6267.832998 6473.106442 5994.293226 7782.849562 7746.966438 7126.98121 6780.36501 7603.505555 9202.535383 0.948162698 0.681098495 0.703404678 0.651374103 0.845728839 0.841829574 0.774458441 0.736793147 0.826240296 1 13.16781568 -7.353667546 5.392053821 0.977166001 0.751111916 0.496289197 0.0766631 0.086529134 3.95470089 0.011398062 0.012989466 4.43E-08 7.353667546 -0.226054086 GTPKPPGPPAQPPGPPNAS(ph)SNPDLR ddPTM_HeLa_CUDC101_4h_R1 1 GTPKPPGPPAQPPGPPNASSNPDLR 25 1 Q8N4C8;Q8N4C8-4 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 GTPKPPGPPAQPPGPPNAS(0.5)S(0.5)NPDLR 80.608 9.66E-05 0 907.32 955.99 872.46 836.79 814.3 820.72 925.11 1136.8 893.13 978.67 TRUE FALSE FALSE 800.965325 985.4429188 919.6278266 870.9179131 754.2307113 805.0661334 960.7918026 1266.208717 856.3148034 972.8488273 0.823319413 1.012945579 0.945293658 0.895224303 0.775280486 0.82753467 0.987606477 1.301547251 0.880213636 1 9.926071829 -4.29338196 3.328172191 0.907402027 1.341053494 0.733204974 0.073168901 0.136014779 2.493734644 0.012240408 0.143340999 5.09E-05 4.29338196 0.433651467 YGGSVGSQPPPVAPEPGPVPSS(ph)PSQEPPTKR ddPTM_HeLa_CUDC101_4h_R1 2 YGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR 31 1 E9PS08;A0A087WTZ5;E9PJ81;E9PRQ7;Q04323;Q04323-2 E9PS08 UBXN1 UBX domain-containing protein 1 1 0 YGGSVGSQPPPVAPEPGPVPS(0.341)S(0.62)PS(0.039)QEPPTKR;YGGSVGSQPPPVAPEPGPVPS(0.385)S(0.558)PS(0.053)QEPPT(0.004)KR ; 158.91 3.41E-17 212617000 5826.4 5495.7 5235.4 5304.4 5937.9 5218.5 5505.8 6178.4 6037.6 5630.2 TRUE FALSE FALSE 5143.438224 5665.016003 5518.44156 5520.73636 5499.872947 5118.965807 5718.16055 6881.724082 5788.727573 5596.71132 0.919010814 1.012204432 0.986015044 0.986425071 0.982697272 0.914638171 1.021700106 1.229601401 1.034308765 1 12.45036362 -4.293044729 3.238290801 0.967008568 1.257815544 0.795641054 0.037356989 0.08982099 1.52022191 0.005129655 0.062518294 5.09E-05 4.293044729 0.290806976 STSAPQMS(ph)PGSSDNQSSSPQPAQQK ddPTM_HeLa_CUDC101_4h_R1 7 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 S(0.033)T(0.033)S(0.014)APQMS(0.529)PGS(0.275)S(0.104)DNQS(0.008)S(0.003)SPQPAQQK;STSAPQMS(0.551)PGS(0.446)S(0.004)DNQSSSPQPAQQK;STS(0.001)APQMS(0.287)PGS(0.287)S(0.287)DNQS(0.049)S(0.066)S(0.024)PQPAQQK;STS(0.001)APQMS(0.49)PGS(0.194)S(0.194)DNQS(0.078)S(0.031)S(0.013)PQPAQQK;S(0.02)T(0.003)S(0.003)APQMS(0.445)PGS(0.445)S(0.079)DNQS(0.004)S(0.001)SPQPAQQK;STSAPQMS(0.983)PGS(0.016)S(0.001)DNQSSSPQPAQQK;STSAPQMS(0.965)PGS(0.034)S(0.001)DNQSSSPQPAQQK ;;;;;; 191.13 8.18E-18 340592000 26874.89 24553.5 23924.14 21748.68 25179.09 24482.95 24825.18 26714.28 25693.54 26292.57 TRUE FALSE FALSE 23724.65613 25309.96423 25217.55137 22635.68518 23321.67869 24015.97852 25782.69551 29755.32565 24634.44141 26136.18062 0.90773233 0.968388021 0.9648522 0.866067062 0.892313955 0.918878656 0.986475257 1.138472605 0.942541749 1 14.67376071 -4.292617229 3.030641304 0.944067959 1.162713851 0.713663354 0.038720036 0.180558867 2.523128282 0.006786843 0.090983078 5.10E-05 4.292617229 0.218645892 NTSPS(ph)LGESR ddPTM_HeLa_CUDC101_4h_R1 1 NTSPSLGESR 10 0 C9J052;Q9NSU2-2;Q9NSU2;Q9NSU2-1 C9J052 TREX1 Three-prime repair exonuclease 1 1 0 NT(0.002)S(0.224)PS(0.774)LGESR 147.58 0.00065018 31699000 4594.5 3556.9 3413.9 3510.4 3685.8 4065.5 3279.1 1984.5 3415.4 3649.1 TRUE FALSE FALSE 4055.939675 3666.483873 3598.46576 3653.569285 3413.905877 3987.957361 3405.575985 2210.407458 3274.615766 3627.394991 1.118141169 1.01077602 0.992024792 1.007215728 0.941145336 1.099399809 0.938848952 0.609364975 0.902745848 1 11.82471814 -4.292388667 2.838473531 1.039780795 0.54753657 0.750277894 0.066832327 0.115181569 1.33563525 0.008549473 0.125772125 5.10E-05 4.292388667 -0.492244224 RFVS(ph)EGDGGR ddPTM_HeLa_CUDC101_4h_R1 1 RFVSEGDGGR 10 1 Q53EL6;Q53EL6-2 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 RFVS(1)EGDGGR 124.48 0.0076534 24616000 3113.9 2538.8 2807.7 3054.3 3020.9 2556.9 2853.9 3296.2 2719.9 2843.6 TRUE FALSE FALSE 2748.893362 2617.017419 2959.492755 3178.867556 2798.054225 2508.131393 2963.975879 3671.426084 2607.784571 2826.686141 0.97247916 0.925825256 1.046983148 1.124591623 0.989870854 0.887304521 1.048569148 1.298844619 0.92255894 1 11.46489599 -4.292305707 3.702894663 0.990780833 1.322712695 0.679974771 0.064437748 0.100511902 2.536152003 0.008469812 0.086430504 5.10E-05 4.292305707 0.331931863 (ac)AENVVEPGPPSAK(ac)RPK ddPTM_HeLa_CUDC101_4h_R1 2 AENVVEPGPPSAKRPK 16 2 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 0 1 ; AENVVEPGPPSAK(1)RPK;AENVVEPGPPSAK(1)RPK 132.56 3.84E-07 46946000 2409.93 2900.5 2805.6 3208.9 3545.1 3612.1 3324.8 4275.9 1437.53 1560.87 FALSE TRUE FALSE 2127.441659 2989.860967 2957.279222 3339.772812 3283.585036 3543.205211 3453.03865 4762.651172 1378.274405 1551.585876 1.371140129 1.926970987 1.905971992 2.152489826 2.116276699 2.283602388 2.22548987 3.069537591 0.888300433 1 10.59952783 -3.971168765 0.161662208 0.633940255 4.888005064 0.911425982 0.184546248 4.682652567 0.118761073 0.447132295 4.249933342 0.000106864 3.971168765 4.254064809 up LEDNPSSGS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 2 LEDNPSSGSPPR 12 0 Q05D32;H0YMH7;Q05D32-2 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 LEDNPS(0.015)S(0.035)GS(0.95)PPR;LEDNPS(0.001)S(0.011)GS(0.989)PPR ; 140.33 0.0012386 36168400 4823.7 3906.2 4176.4 4211.4 3708.4 3690.4 3440.1 1716.15 4078 4047.5 TRUE FALSE FALSE 4258.273198 4026.545392 4402.188817 4383.159095 3434.83872 3620.011769 3572.785809 1911.509579 3909.903114 4023.42529 1.058370143 1.000775484 1.09413957 1.089409838 0.853710079 0.899733811 0.887996061 0.475095085 0.971784694 1 11.97420853 -3.969453083 0.921063159 1.028637721 1.32E-18 0.833002385 0.070287216 0.911085291 0.406099571 0.010497564 1.062634661 0.000107287 3.969453083 -1.028637721 down SLTEISTDFDRSS(ph)PPLQPPPVNSLTTENR ddPTM_HeLa_CUDC101_4h_R1 1 SLTEISTDFDRSSPPLQPPPVNSLTTENR 29 1 J3KRR7;Q9NQC7-2;Q9NQC7 J3KRR7 CYLD Ubiquitin carboxyl-terminal hydrolase CYLD 1 0 SLTEISTDFDRS(0.181)S(0.818)PPLQPPPVNSLTTENR 98.973 3.96E-09 63656000 1485.9 1182.2 942.03 967.97 1335.7 1285.9 1032.9 670.7 1055.2 1014.1 TRUE FALSE FALSE 1311.725054 1218.622181 992.9589913 1007.448001 1237.168072 1261.3736 1072.739299 747.0497769 1011.704209 1008.068088 1.301226643 1.20886892 0.985011829 0.999384875 1.227266379 1.251278177 1.064153614 0.741070753 1.00360702 1 9.977377371 -4.292194156 3.563887167 1.14074579 0.706804358 0.484861757 0.115601704 0.184964112 4.157107773 0.01893786 0.20338217 5.10E-05 4.292194156 -0.433941432 SGGGGGGGGSSWGGR ddPTM_HeLa_CUDC101_4h_R1 2 SGGGGGGGGSSWGGR 15 0 Q13151 Q13151 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 0 0 ; ; 128.68 0.0039644 3302500 146.29 265.79 325.008 465.78 412.27 138.58 239.17 0 271.209 266.46 FALSE FALSE TRUE 129.142108 273.9786749 342.5789156 484.7765217 381.8576635 135.9368174 248.394867 0 260.0296502 264.8750841 0.487558535 1.034369374 1.29336029 1.83020809 1.441651882 0.51321104 0.937781173 0 0.981706721 1 8.04916833 -2.721875377 10.32190347 0.874662245 0.718627875 0 0.501202743 0 0 0.070125495 0 0.00189725 2.721875377 -0.15603437 VNVTVDYIRPASPAT(ph)ETVPAFSER ddPTM_HeLa_CUDC101_4h_R1 1 VNVTVDYIRPASPATETVPAFSER 24 1 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 1 0 VNVT(0.001)VDY(0.032)IRPAS(0.31)PAT(0.525)ET(0.127)VPAFS(0.005)ER 54.824 0.017433 75839000 1996.6 1641.9 1658.1 1850.5 2068.9 1934.9 1877.1 1829.8 1787.5 2112.2 TRUE FALSE FALSE 1762.561575 1692.484993 1747.741901 1925.971389 1916.281369 1897.995006 1949.500376 2038.097036 1713.818493 2099.63654 0.839460326 0.806084749 0.832402117 0.917287993 0.912672899 0.9039636 0.928494212 0.970690401 0.816245317 1 11.0359239 -4.292010073 1.85905879 0.905125748 0.989335281 0.082626292 0.060443837 1.866626323 6.862633259 0.010729639 0.266198686 5.10E-05 4.292010073 0.084209533 SLPHLPGT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SLPHLPGTPR 10 0 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40;Q14244-2;Q14244-4 Q14244-5 MAP7 Ensconsin 1 0 S(0.098)LPHLPGT(0.902)PR 99.788 0.0011262 0 997.98 930.75 927.83 712.59 634.98 872.59 964.26 1188.3 628.89 1061.6 TRUE FALSE FALSE 880.9982972 959.4253043 977.9912963 741.6525003 588.1387905 855.9467996 1001.451831 1323.571269 602.966888 1055.285556 0.83484351 0.909161789 0.926755124 0.702797926 0.557326675 0.81110444 0.94898658 1.254230441 0.571377941 1 10.04341772 -4.2918287 3.294444869 0.872375717 1.293950115 0.375009149 0.156476392 0.24055526 4.280629655 0.020502924 0.24563688 5.11E-05 4.2918287 0.421574398 GS(ph)FSDTGLGDGK ddPTM_HeLa_CUDC101_4h_R1 1 GSFSDTGLGDGK 12 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 GS(0.956)FS(0.009)DT(0.036)GLGDGK 100.22 0.01144 11784000 1126.9 1192 919.29 778.06 1121.5 1066.1 1411.4 2197.7 1281.3 1469.4 TRUE FALSE FALSE 994.8064903 1228.724107 968.9895981 809.7926499 1038.769179 1045.765919 1465.838171 2447.877285 1228.484272 1460.659943 0.681066455 0.841211613 0.663391642 0.554401901 0.711164282 0.715954404 1.003545129 1.675870757 0.841047416 1 10.51240463 -4.291060823 2.750305637 0.794874688 1.811306237 0.83566767 0.122472687 0.159570987 1.69021335 0.022850678 0.353656907 5.12E-05 4.291060823 1.016431549 S(ph)QSAAVTPSSTTSSTR ddPTM_HeLa_CUDC101_4h_R1 2 SQSAAVTPSSTTSSTR 16 0 Q16186;A0A087WX59 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 1 0 S(0.991)QS(0.009)AAVTPSSTTSSTR;S(0.998)QS(0.002)AAVTPSSTTSSTR ; 246.49 1.13E-55 23954000 964.56 933.92 887.01 834.3 914.57 746.63 945.85 1191.4 929.97 1001.37 TRUE FALSE FALSE 851.495739 962.6929682 934.9644437 868.3263602 847.1039932 732.3892767 982.3317513 1327.02416 891.636243 995.4138067 0.855418855 0.967128406 0.939272127 0.87232702 0.851006875 0.735763631 0.986857671 1.33313819 0.895744299 1 9.959152588 -4.290947094 3.922406525 0.911641665 1.361450561 0.767448224 0.072219576 0.092098117 2.783924943 0.011649307 0.111396173 5.12E-05 4.290947094 0.449808896 TPTSS(ph)PAS(ph)SPLVAK ddPTM_HeLa_CUDC101_4h_R1 1 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 2 0 T(0.12)PT(0.055)S(0.055)S(0.614)PAS(0.809)S(0.348)PLVAK 120.6 0.013729 58916000 5619 5317 4974.5 4369.7 5779.7 5854.8 4514.3 2446.5 5312.6 5264.5 TRUE FALSE FALSE 4960.349338 5480.810468 5243.436517 4547.915253 5353.343046 5743.129445 4688.418063 2724.999671 5093.612379 5233.18652 0.947864044 1.047318005 1.001958653 0.869052772 1.02296049 1.097444057 0.895901196 0.520715182 0.973329034 1 12.35347396 -4.290388989 3.475124583 0.984609502 0.477492832 0.853663183 0.058582684 0.071111422 1.483292676 0.008047664 0.090345525 5.12E-05 4.290388989 -0.50711667 ALDSNS(ph)LENDDLSAPGREPGHFNPESR ddPTM_HeLa_CUDC101_4h_R1 1 ALDSNSLENDDLSAPGREPGHFNPESR 27 1 Q32MZ4-3;Q32MZ4-2;Q32MZ4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 ALDS(0.061)NS(0.939)LENDDLSAPGREPGHFNPESR 101.14 5.22E-07 24383000 881.72 757.96 655.63 846.28 679.17 571.49 777.15 1083.8 755.18 669.59 TRUE FALSE FALSE 778.3661182 781.3118492 691.075341 880.7949563 629.0689822 560.5897804 807.1249358 1207.175411 724.0511608 665.6072489 1.169407514 1.173833143 1.038262943 1.323295318 0.945105365 0.84222307 1.212614402 1.813645229 1.087805402 1 9.378527335 -4.290243525 3.722418623 1.07903563 1.871127037 0.75192665 0.126959461 0.089953308 2.313431642 0.018132121 0.185993037 5.13E-05 4.290243525 0.792091407 EDSAPPS(ph)SVAR ddPTM_HeLa_CUDC101_4h_R1 1 EDSAPPSSVAR 11 0 Q9BZE4-3;Q9BZE4-2;Q9BZE4 Q9BZE4-3 GTPBP4 Nucleolar GTP-binding protein 1 1 0 EDSAPPS(0.5)S(0.5)VAR 84.821 0.032163 6977400 2999.9 2524.5 2954.5 2917.2 2595.3 2549.4 2626.4 2570.1 2506.9 2729.1 TRUE FALSE FALSE 2648.25627 2602.276853 3114.229207 3036.176025 2403.84989 2500.774443 2727.701128 2862.669795 2403.564521 2712.867192 0.976183529 0.959234886 1.147947535 1.119176064 0.88609199 0.921819708 1.005467992 1.055219291 0.8859868 1 11.40560271 -4.290235557 4.905465275 0.995244002 1.057184425 0.049925885 0.083451922 0.425232413 26.93575758 0.01069021 0.081026659 5.13E-05 4.290235557 0.061940424 S(ph)PGLPMSDLK ddPTM_HeLa_CUDC101_4h_R1 2 SPGLPMSDLK 10 0 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;H0Y2S9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 S(1)PGLPMSDLK;S(1)PGLPMSDLK ; 108.98 0.0013092 3970600 5295.9 3992.1 3867.48 3586 3880.8 4473.6 3592.43 2455.27 3877.43 3263.82 TRUE FALSE FALSE 4675.12263 4115.091869 4076.567667 3732.25258 3594.521116 4388.273534 3730.991228 2734.768012 3717.600694 3244.406653 1.440979239 1.268365007 1.256490971 1.150365222 1.107913249 1.352565816 1.149976445 0.842917767 1.145849177 1 11.66373894 -4.290143328 3.786353663 1.217435633 0.814862902 0.464528839 0.1191217 0.219462751 5.950767692 0.023206802 0.23304376 5.13E-05 4.290143328 -0.402572731 RT(ph)ASPPPPPKR ddPTM_HeLa_CUDC101_4h_R1 1 RTASPPPPPKR 11 2 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 RT(0.899)AS(0.101)PPPPPKR 80.69 0.033363 14249000 2394.2 2063.7 2236.1 2234.6 2527.1 1895 2190.1 2529.9 2372.3 2162.8 TRUE FALSE FALSE 2113.555505 2127.280151 2356.99033 2325.736647 2340.680868 1858.856032 2274.572891 2817.89359 2274.51279 2149.935569 0.983078533 0.98946228 1.096307426 1.081770393 1.088721402 0.864610111 1.057972584 1.31068746 1.05794463 1 11.07007771 -4.29003598 3.999474685 1.004482523 1.330387361 0.616393706 0.067181835 0.094437519 3.042625705 0.008939351 0.083936626 5.13E-05 4.29003598 0.325904838 SGK(ac)FMNPTDQAR ddPTM_HeLa_CUDC101_4h_R1 5 SGKFMNPTDQAR 12 1 Q9Y2W2;F5GXS9;F5H5G4 Q9Y2W2 WBP11 WW domain-binding protein 11 0 1 ;;;; SGK(1)FMNPTDQAR;SGK(1)FMNPTDQAR;SGK(1)FMNPTDQAR;SGK(1)FMNPTDQAR;SGK(1)FMNPTDQAR 134.18 0.00064839 100367000 10403.91 9718.45 5630.72 8862.32 9441.85 8045.56 6350.91 3854.08 5959.01 4369.63 FALSE TRUE FALSE 9184.379441 10017.86393 5935.133755 9223.763716 8745.343536 7892.104348 6595.866726 4292.812888 5713.377086 4343.639246 2.114443424 2.306329637 1.366396567 2.123510539 2.013367833 1.816933659 1.518511633 0.98829867 1.31534337 1 12.08468857 -9.423956164 1.170250674 1.002986296 1.823936433 0.274711534 0.390293735 0.402349413 0.99115696 0.264004197 0.067475929 3.77E-10 9.423956164 0.820950137 SGK(ac)LKGDDLQAIKK ddPTM_HeLa_CUDC101_4h_R1 1 SGKLKGDDLQAIKK 14 3 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2D6;G3V2Q1;B4DY08;G3V4W0;G3V5V7;G3V576 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 1 SGK(0.654)LK(0.346)GDDLQAIKK 93.243 0.0077906 7402900 1790.4 1985.5 1936.7 2037.2 1931.3 1902 1906.1 2414.9 1822.1 1499.1 FALSE TRUE FALSE 1580.532026 2046.670902 2041.40386 2120.285822 1788.831847 1865.722519 1979.618915 2689.802455 1746.992267 1490.183287 1.06062928 1.373435684 1.369901192 1.422835594 1.200410623 1.252008753 1.328439886 1.80501451 1.172333821 1 10.54127407 -1 0.138922243 0.871335511 3.338309409 0.465899314 0.156233895 38.00304207 0.349608348 0.427361706 18.66386951 0.1 1 2.466973898 SGK(ac)RVGKPSPK ddPTM_HeLa_CUDC101_4h_R1 1 SGKRVGKPSPK 11 3 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 0 1 SGK(0.999)RVGK(0.001)PSPK 88.596 0.008177 0 2439.5 1827.8 2457 2381.1 2832.2 3038.3 2622 2828.1 2085 1953.2 FALSE TRUE FALSE 2153.545508 1884.112352 2589.832852 2478.21155 2623.274249 2980.34949 2723.131418 3150.039472 1999.055418 1941.58228 1.109170356 0.970400467 1.333877466 1.276387602 1.351101252 1.535010657 1.402532072 1.622408438 1.029601186 1 10.92301713 -5.89671688 0.542157092 1.026249165 1.598868902 0.848772599 0.084174272 0.296709752 0.147352611 0.019529565 0.079933282 1.27E-06 5.89671688 0.572619737 SGKLK(ac)GDDLQAIKK ddPTM_HeLa_CUDC101_4h_R1 1 SGKLKGDDLQAIKK 14 3 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2D6;G3V2Q1;B4DY08;G3V4W0;G3V5V7;G3V576 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 1 SGK(0.035)LK(0.965)GDDLQAIKK 58.831 0.034373 6952900 7190.7 5915 7351.3 6468.6 6422.2 4850.8 5002.1 5545.3 4746.4 3027.9 FALSE TRUE FALSE 6347.817046 6097.234139 7748.733514 6732.417468 5948.447101 4758.279072 5195.032673 6176.554537 4550.751383 3009.889916 2.108986449 2.025733269 2.574424225 2.236765349 1.976300551 1.580881429 1.7259876 2.052086524 1.511932831 1 11.55549501 -9.162365554 0.851779992 0.981842215 2.033393091 0.499640282 0.295498138 0.312109761 0.398134999 0.209693921 0.056251822 6.88E-10 9.162365554 1.051550876 SGKYDLDFK(ac)SPDDPSR ddPTM_HeLa_CUDC101_4h_R1 1 SGKYDLDFKSPDDPSR 16 2 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 1 SGKYDLDFK(1)SPDDPSR 116.78 0.013551 2707400 2032.1 1255.6 1042.8 932.11 3465.3 2327.1 2742.9 3607.2 2057.7 1950 FALSE TRUE FALSE 1793.900318 1294.283548 1099.176922 970.1254747 3209.671723 2282.714445 2848.694572 4017.829067 1972.880735 1938.401313 0.92545352 0.667706702 0.567053331 0.500477104 1.655834476 1.177627372 1.469610319 2.072753996 1.017787556 1 10.92065157 -5.746428396 24.99956713 0.877054885 1.55533704 0.671735855 0.273283068 135.6281383 225876.2703 0.041749403 0.083233234 1.79E-06 5.746428396 0.678282155 SGLAESSSK(ac)FKPTQSSLTR ddPTM_HeLa_CUDC101_4h_R1 1 SGLAESSSKFKPTQSSLTR 19 2 Q14966-3;Q14966;Q14966-5 Q14966-3 ZNF638 Zinc finger protein 638 0 1 SGLAESSSK(0.999)FK(0.001)PTQSSLTR 76.068 0.030844 1842300 53.212 279.98 276.43 317.75 366.03 518.61 400.35 266.37 158.09 139.32 FALSE TRUE FALSE 46.97457002 288.6058519 291.374642 330.7092184 339.0286961 508.7183783 415.7916336 296.6924841 151.5734633 138.4913184 0.339187832 2.083927391 2.103919908 2.387941874 2.44801407 3.673287135 3.00229385 2.142318287 1.094461841 1 7.113651731 -6.914331008 1.607741347 0.686706939 2.760933075 0.730261719 0.486222581 0.124126238 0.641261175 0.091830419 0.125478083 1.22E-07 6.914331008 2.074226136 AVIVSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 AVIVSSPK 8 0 Q14966-3;Q14966;Q14966-5 Q14966-3 ZNF638 Zinc finger protein 638 1 0 AVIVS(0.157)S(0.843)PK;AVIVS(0.23)S(0.77)PK ; 113.71 0.0098954 335550000 19239 16719.9 15309.4 15960.2 16564.2 15152.2 14073.5 11438.4 16009.1 16679.2 TRUE FALSE FALSE 16983.83358 17235.0203 16137.07247 16611.12594 15342.29197 14863.19703 14616.31961 12740.50122 15349.19812 16579.99138 1.024357203 1.039507193 0.973285939 1.00187784 0.925349816 0.896453846 0.881563764 0.768426288 0.925766351 1 14.01715564 -4.2898839 0.582236975 1.014420376 0.629014568 0.792857551 0.035426058 0.631822623 0.147245798 0.004189445 0.162368282 5.13E-05 4.2898839 -0.385405808 S(ph)IADSEESEAYK ddPTM_HeLa_CUDC101_4h_R1 1 SIADSEESEAYK 12 0 A0A0A0MQR2;Q9BY42 A0A0A0MQR2 RTFDC1 Protein RTF2 homolog 1 0 S(0.997)IADS(0.001)EES(0.002)EAYK 108.72 0.00076778 0 1020 1092.7 1160.3 959.03 1066.7 938.84 990.71 994.85 1045.1 1083.9 TRUE FALSE FALSE 900.4371462 1126.364792 1223.029328 998.1433887 988.0116662 920.9331912 1028.922017 1108.099703 1002.020536 1077.452915 0.835709045 1.045395837 1.135111624 0.926391655 0.916988253 0.854731728 0.954957755 1.028443738 0.929990092 1 10.07340911 -4.289872849 4.686248857 0.94009054 1.031883516 0.037686394 0.084727831 0.389600094 21.16650491 0.013562501 0.107404602 5.13E-05 4.289872849 0.091792976 SQS(ph)WDDRGER ddPTM_HeLa_CUDC101_4h_R1 1 SQSWDDRGER 10 1 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 SQS(1)WDDRGER 130.44 0.011393 8042200 3162.1 2503.5 2170.7 2596.1 2295.2 2492.7 3171.4 4834.5 2618.4 2580.8 TRUE FALSE FALSE 2791.443431 2580.629868 2288.054608 2701.980179 2125.887669 2445.155901 3293.72196 5384.839938 2510.468444 2565.449287 1.088091449 1.005917319 0.891872866 1.053219096 0.82866096 0.953110207 1.283877244 2.098985143 0.978568727 1 11.32499579 -4.2896314 2.562024775 1.010619236 2.291184578 0.947943641 0.079132059 0.078473773 0.680507626 0.01224701 0.210215237 5.13E-05 4.2896314 1.280565342 up LPLVPES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 LPLVPESPR 9 0 C9J0I9;Q86WB0;Q86WB0-2;Q86WB0-3 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR ;;; 131.12 0.0030547 117188000 4701.56 3998.69 3493.35 3541.51 4401.71 3811.97 4012.36 4489.5 4438.9 3919.34 TRUE FALSE FALSE 4150.450264 4121.884899 3682.211068 3685.948086 4077.004623 3739.263023 4167.118069 5000.566533 4255.926663 3896.027591 1.065303098 1.057971178 0.945119351 0.946078537 1.046451681 0.959762973 1.069581252 1.283503881 1.092375904 1 11.92778818 -4.289326852 3.387619588 1.018378885 1.310080579 0.724115655 0.049646608 0.108903322 2.105027974 0.006715921 0.078543478 5.14E-05 4.289326852 0.291701694 TSSGDPPS(ph)PLVK ddPTM_HeLa_CUDC101_4h_R1 2 TSSGDPPSPLVK 12 0 F5GX58;F8WDL1;Q99618 F5GX58 CDCA3 Cell division cycle-associated protein 3 1 0 TSSGDPPS(1)PLVK;TSSGDPPS(1)PLVK ; 164.92 5.22E-05 166994000 13924.3 11756 10759.3 11363.2 13714.9 12064.9 12262 13111.4 11991.5 12098.9 TRUE FALSE FALSE 12292.11466 12118.18843 11340.9803 11826.64041 12703.17915 11834.78213 12734.94945 14603.94878 11497.20529 12026.9352 1.022048797 1.007587404 0.942965112 0.983346149 1.056227454 0.984023106 1.058869049 1.21427018 0.955954705 1 13.55398143 -4.288894522 2.557274975 1.005501479 1.251679954 0.807024545 0.032201 0.133442911 1.149926334 0.003976934 0.068695112 5.14E-05 4.288894522 0.246178475 TFQARPLS(ph)ADLTK ddPTM_HeLa_CUDC101_4h_R1 1 TFQARPLSADLTK 13 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 TFQARPLS(1)ADLTK 166.79 5.82E-05 46360000 2163.2 2381 2132.8 1721.6 2214.5 1928.1 1664.6 1168.6 2196.2 1723.8 TRUE FALSE FALSE 1909.632975 2454.355788 2248.105619 1791.814289 2051.140747 1891.324705 1728.80418 1301.6287 2105.671706 1713.546761 1.114432952 1.432324955 1.311960473 1.045675747 1.19701475 1.103748522 1.008903999 0.759610843 1.228838194 1 10.74276985 -4.288886633 2.145693519 1.112921591 0.676858151 0.429173754 0.134011158 0.561305728 2.998147194 0.02127952 0.457741111 5.14E-05 4.288886633 -0.436063441 DLFDLNS(ph)SEEDDTEGFSER ddPTM_HeLa_CUDC101_4h_R1 1 DLFDLNSSEEDDTEGFSER 19 0 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 DLFDLNS(0.77)S(0.23)EEDDTEGFSER 236.66 4.66E-44 37377000 4644.4 3658.8 3289.2 3474 3946.8 3222.9 2934.4 2243.8 3181.6 3495.5 TRUE FALSE FALSE 4099.990472 3771.523291 3467.024101 3615.684736 3655.652427 3161.428552 3047.580791 2499.225122 3050.453101 3474.708611 1.179952316 1.085421459 0.997788445 1.040572071 1.05207453 0.909839905 0.877075212 0.719261786 0.877901845 1 11.76267628 -4.288681581 0.703330819 1.082489129 0.510006927 0.563563428 0.08204573 1.102477645 0.386880137 0.012378985 0.496796503 5.14E-05 4.288681581 -0.572482202 REGPGS(ph)EPDSQVDGGLSGASLGEK ddPTM_HeLa_CUDC101_4h_R1 4 REGPGSEPDSQVDGGLSGASLGEK 24 1 Q5JSZ5;A0A494C0D3;H0Y412;A0A494C065 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 REGPGS(0.999)EPDS(0.001)QVDGGLSGASLGEK;REGPGS(0.998)EPDS(0.002)QVDGGLSGASLGEK;REGPGS(1)EPDSQVDGGLSGASLGEK;REGPGS(0.994)EPDS(0.005)QVDGGLSGASLGEK ;;; 128.68 5.25E-09 130907000 10248.6 9244.9 9363.1 8976.9 10592.4 9321.7 9930.8 11535.1 9964.4 10414.2 TRUE FALSE FALSE 9047.274644 9529.724411 9869.297508 9343.016783 9811.019755 9143.904104 10313.83428 12848.20916 9553.663214 10352.25588 0.873942332 0.920545679 0.953347524 0.902510225 0.94771805 0.883276477 0.996288578 1.241102356 0.922858103 1 13.33765756 -4.288416921 3.151974247 0.933531469 1.277743928 0.875582759 0.035534847 0.108263389 1.690294019 0.006806233 0.088415369 5.15E-05 4.288416921 0.344212459 LQEES(ph)DLELAK ddPTM_HeLa_CUDC101_4h_R1 1 LQEESDLELAK 11 0 O75822-2;O75822;O75822-3 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 LQEES(1)DLELAK 143.64 0.0012082 22383000 3458.2 2737 2599.3 2715 2737.6 2598.6 2905 3425.6 2749.8 2816.1 TRUE FALSE FALSE 3052.835038 2821.323726 2739.82602 2825.729435 2535.652702 2549.036035 3017.046823 3815.556457 2636.45208 2799.349712 1.090551504 1.007849685 0.9787366 1.009423518 0.905800619 0.910581491 1.077767029 1.363015289 0.94180876 1 11.45087601 -4.288209156 3.73612166 1.016739278 1.390485207 0.767085961 0.060803778 0.099613277 2.598441818 0.009466312 0.097829654 5.15E-05 4.288209156 0.373745929 ASPRPWT(ph)PEDPWSLYGPSPGGR ddPTM_HeLa_CUDC101_4h_R1 3 ASPRPWTPEDPWSLYGPSPGGR 22 1 Q14934-18;Q14934-17;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-9;Q14934-10;Q14934-11;Q14934-12;Q14934-13;Q14934-14;Q14934-15;Q14934-16;Q14934-2 Q14934-18 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 AS(0.022)PRPWT(0.978)PEDPWSLYGPSPGGR;AS(0.003)PRPWT(0.978)PEDPWS(0.019)LY(0.001)GPSPGGR;AS(0.196)PRPWT(0.804)PEDPWSLYGPSPGGR ;; 98.747 0.00021635 88078500 4461 4276.8 3261.23 3298.23 5898.4 4503.4 3483.97 1597.46 4316.9 4039.1 TRUE FALSE FALSE 3938.088342 4408.563139 3437.541958 3432.746076 5463.286783 4417.505148 3618.34789 1779.308389 4138.955555 4015.075254 0.980825537 1.098002618 0.856158787 0.854964318 1.360693496 1.100229727 0.901190553 0.443156922 1.030853793 1 11.97121131 -4.288043722 3.291752593 1.011182701 0.3816876 0.622143943 0.137265567 0.150561561 2.671313852 0.018834475 0.23086457 5.15E-05 4.288043722 -0.6294951 ASPEPQRENASPAPGTT(ph)AEEAMSR ddPTM_HeLa_CUDC101_4h_R1 1 ASPEPQRENASPAPGTTAEEAMSR 24 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 ASPEPQRENAS(0.058)PAPGT(0.387)T(0.548)AEEAMS(0.007)R 57.985 0.0062368 10836000 1553.1 1497.4 1458 1369.1 1721.3 1386.4 1446.4 1571.1 1751.7 1478.5 TRUE FALSE FALSE 1371.047972 1543.533119 1536.82389 1424.937816 1594.323128 1359.95673 1502.188133 1749.947673 1679.494185 1469.705816 0.932872387 1.050232708 1.045667693 0.969539482 1.08479065 0.925325813 1.022101237 1.190678879 1.142741742 1 10.52131169 -4.288001806 3.611140661 0.984851079 1.208580003 0.254918722 0.070540743 0.1368572 3.213211868 0.007289428 0.07884474 5.15E-05 4.288001806 0.223728924 S(ph)FDHLISDTK ddPTM_HeLa_CUDC101_4h_R1 3 SFDHLISDTK 10 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 S(1)FDHLISDTK;S(1)FDHLISDTK;S(1)FDHLISDTK ;; 122.33 0.0042716 33159200 6693.6 5562.3 4964.5 5324.3 6750.2 6649.3 5261.6 3795.4 4461.5 5410.2 TRUE FALSE FALSE 5908.986355 5733.66787 5232.895887 5541.447968 6252.251194 6522.475681 5464.541675 4227.452994 4277.595082 5378.01989 1.098728989 1.066129912 0.973015347 1.03038815 1.162556354 1.212802447 1.016088037 0.786061242 0.795384764 1 12.39285938 -4.287755453 4.242418714 1.061155686 0.770735825 0.31808701 0.108735275 0.114291105 4.491816186 0.010627793 0.09450998 5.16E-05 4.287755453 -0.290419861 NALPPVLTTVNGQS(ph)PPEHSAPAK ddPTM_HeLa_CUDC101_4h_R1 2 NALPPVLTTVNGQSPPEHSAPAK 23 0 Q6PKG0;A0A0B4J210;H0YBM7 Q6PKG0 LARP1 La-related protein 1 1 0 NALPPVLTTVNGQS(1)PPEHSAPAK;NALPPVLTTVNGQS(1)PPEHSAPAK ; 133.46 1.02E-07 1566230000 21055.1 17854.5 18167.9 17765.2 20189.4 18638.1 18132.1 17965.9 20257.1 18547.3 TRUE FALSE FALSE 18587.0531 18404.57598 19150.11163 18489.74164 18700.06818 18282.6093 18831.46117 20011.06544 19422.09376 18436.97983 1.008139796 0.998242453 1.038679426 1.002861738 1.014269601 0.991627124 1.021396202 1.085376543 1.053431415 1 14.17031473 -4.286552215 3.263700123 1.006013078 1.094282768 0.52717629 0.01928848 0.093999684 1.625149056 0.001610802 0.020155238 5.17E-05 4.286552215 0.08826969 SGPPHRGDESGYR ddPTM_HeLa_CUDC101_4h_R1 1 SGPPHRGDESGYR 13 1 Q8NEY8;F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;F8VWU8;F8VPY7;F8VRK2 Q8NEY8 PPHLN1 Periphilin-1 0 0 86.288 0.012867 451230 127.01 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 112.1220803 0 0 0 0 0 0 0 0 0 0 QQPPLGPSSS(ph)LLSLPGLK ddPTM_HeLa_CUDC101_4h_R1 2 QQPPLGPSSSLLSLPGLK 18 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 QQPPLGPSS(0.228)S(0.772)LLSLPGLK;QQPPLGPS(0.004)S(0.185)S(0.787)LLS(0.024)LPGLK ; 231.38 1.33E-43 70445000 6275 5327.8 5599.4 5129.8 6367.8 7105.5 7574.6 8447.1 4416 5220.3 TRUE FALSE FALSE 5539.454012 5491.943203 5902.120501 5339.015417 5898.06008 6969.974426 7866.754859 9408.68372 4233.970611 5189.249423 1.067486559 1.058330937 1.137374603 1.02886082 1.136592135 1.343156564 1.515971621 1.813110713 0.815911949 1 12.34131017 -4.286356203 0.754652592 1.034830363 2.279958727 0.917690319 0.078984109 0.268547478 0.11009399 0.006936607 0.27988985 5.17E-05 4.286356203 1.245128365 SECS(ph)SDFGGK ddPTM_HeLa_CUDC101_4h_R1 2 SECSSDFGGK 10 0 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 SECS(0.631)S(0.369)DFGGK;SECS(0.986)S(0.014)DFGGK ; 149.94 0.00049174 24973000 4789.8 3936.2 4270.9 4048.6 3825.2 3907.6 4108.4 4505.9 4080.8 4109.3 TRUE FALSE FALSE 4228.346905 4057.469656 4501.797773 4213.719408 3543.022617 3833.069041 4266.862364 5018.833443 3912.587697 4084.857701 1.0351271 0.993295227 1.102069669 1.031546192 0.867355212 0.938360482 1.044555937 1.228643397 0.957827171 1 11.99607011 -4.286301337 3.814244676 1.007188084 1.24564419 0.564501616 0.061261523 0.136527151 3.811506861 0.008542335 0.087008348 5.17E-05 4.286301337 0.238456106 SGPTDDGEEEMEEDTVTNGS ddPTM_HeLa_CUDC101_4h_R1 1 SGPTDDGEEEMEEDTVTNGS 20 0 P09661 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A 0 0 142.1 0.00011733 9854900 1496.1 1220.7 1018.2 1178.3 1363.3 1334.1 1117.7 965.88 1175.2 1359.3 FALSE FALSE TRUE 1320.729426 1258.30832 1073.246972 1226.356167 1262.732075 1308.654265 1160.810063 1075.831875 1126.757759 1351.214823 0.977438527 0.931242241 0.794283006 0.907595259 0.934516151 0.968502005 0.859086241 0.796196028 0.833884989 1 10.40004134 -7.127230013 3.48091417 0.989525833 0.88298244 0 0.071755587 0.166942229 3.725019053 0.009116853 0.011307874 7.46E-08 7.127230013 -0.106543394 AIT(ph)PPQQPYKK ddPTM_HeLa_CUDC101_4h_R1 1 AITPPQQPYKK 11 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 AIT(1)PPQQPYKK 110.86 0.0010659 0 1856.5 1404.8 1801.2 1546.1 2022 1680 1761.4 1995.4 1800.7 1864.5 TRUE FALSE FALSE 1638.883884 1448.080223 1898.57832 1609.156641 1872.841088 1647.956799 1829.337788 2222.54827 1726.474384 1853.409871 0.884253348 0.781305984 1.024370459 0.868214131 1.010484037 0.889148604 0.987012002 1.19916717 0.931512458 1 10.85596625 -4.285822055 3.161521497 0.934267031 1.23129008 0.570150314 0.071246058 0.189995365 2.988179559 0.010252839 0.134641698 5.18E-05 4.285822055 0.297023048 TQPDGT(ph)SVPGEPASPISQR ddPTM_HeLa_CUDC101_4h_R1 1 TQPDGTSVPGEPASPISQR 19 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 T(0.136)QPDGT(0.697)S(0.167)VPGEPASPISQR 113.86 0.0001793 0 590.99 428.27 398.63 372.24 488.59 327.16 528.11 897.16 390.88 434.74 TRUE FALSE FALSE 521.7150481 441.4644911 420.1811436 387.4215562 452.5476891 320.9199681 548.4793796 999.289068 374.767761 432.1541471 1.207242951 1.021544035 0.9722946 0.896489271 1.047190434 0.742605319 1.269175324 2.312344043 0.867208526 1 8.755402196 -4.285227525 3.570323474 1.047202143 2.428828436 0.893616837 0.136724557 0.061759601 1.402548691 0.019641223 0.219363259 5.19E-05 4.285227525 1.381626293 up VRS(ph)LETENR ddPTM_HeLa_CUDC101_4h_R1 1 VRSLETENR 9 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 VRS(0.998)LET(0.002)ENR 67.749 0.040208 10975000 475.2 552.21 625.78 665.27 591.26 627.98 512.37 315.05 581.52 679.7 TRUE FALSE FALSE 419.4977764 569.2229356 659.6115597 692.4025861 547.6439278 616.0023278 532.1322825 350.9140185 557.5494995 675.6571142 0.620873765 0.842473088 0.976251927 1.024783979 0.810535279 0.911708491 0.787577414 0.519367015 0.825195928 1 9.400147476 -4.285043437 3.348848932 0.84880882 0.483992277 0.459488152 0.113290519 0.29495237 5.506640017 0.021834105 0.266104187 5.19E-05 4.285043437 -0.364816543 RS(ph)SGFISELPSEEGK ddPTM_HeLa_CUDC101_4h_R1 2 RSSGFISELPSEEGK 15 1 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 RS(0.48)S(0.48)GFIS(0.041)ELPSEEGK;RS(0.5)S(0.5)GFIS(0.001)ELPSEEGK ; 111.65 0.0011943 210027000 16757.5 14615.5 14783.1 15142.9 16891 15139.4 12487 7405.2 12187.5 12381 TRUE FALSE FALSE 14793.21125 15065.78623 15582.3191 15760.49292 15644.98458 14850.64117 12968.62777 8248.178035 11685.12609 12307.35726 1.201981135 1.224128455 1.266097893 1.28057491 1.271189602 1.206647443 1.053729692 0.670182709 0.949442341 1 13.58723339 -4.284896683 3.076565128 1.150200214 0.608199939 0.652385957 0.109463156 0.186603177 2.707077998 0.017334891 0.237698527 5.19E-05 4.284896683 -0.542000275 SGPKPFSAPKPQTSPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SGPKPFSAPKPQTSPSPK 18 2 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 1 0 SGPKPFSAPKPQT(0.038)S(0.168)PS(0.795)PK;SGPKPFSAPKPQT(0.161)S(0.161)PS(0.678)PK ; 67.299 0.0095894 11554900000 13785.3 12899.5 13486.4 12736.9 14383.4 12604 13069.3 14583.2 13473.9 13391 TRUE FALSE FALSE 12169.40803 13296.91831 14215.51558 13256.36584 13322.36524 12363.5997 13573.38728 16243.29254 12918.50014 13311.34974 0.914212929 0.998915855 1.06792443 0.995869397 1.000827527 0.928801357 1.019685272 1.220258866 0.970487621 1 13.70036924 -4.284734248 3.291002846 0.973093274 1.247950077 0.736113841 0.04156366 0.129187033 2.288383808 0.006951698 0.086932051 5.19E-05 4.284734248 0.274856804 FLPISS(ph)TPQPER ddPTM_HeLa_CUDC101_4h_R1 2 FLPISSTPQPER 12 0 J3KNG6;Q08AE8-4;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 FLPIS(0.091)S(0.689)T(0.22)PQPER;FLPIS(0.074)S(0.675)T(0.251)PQPER ; 132.86 0.0014732 18798400 3283.1 2941.6 2575.1 2488.8 3045.7 2814.8 2813 2970.7 2207.3 2800.6 TRUE FALSE FALSE 2898.259995 3032.227209 2714.317695 2590.304022 2821.024779 2761.11238 2921.498352 3308.87248 2116.31416 2783.941907 1.041063389 1.0891848 0.974990782 0.930444711 1.013320275 0.991799568 1.049410674 1.188556583 0.760186179 1 11.44291339 -4.284534653 3.013557834 1.01337725 1.212264488 0.280107727 0.089271269 0.179872405 2.455561338 0.005874823 0.083076687 5.19E-05 4.284534653 0.198887238 ETPAATEAPSS(ph)TPK ddPTM_HeLa_CUDC101_4h_R1 3 ETPAATEAPSSTPK 14 0 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 ETPAATEAPSS(0.946)T(0.054)PK;ETPAATEAPS(0.002)S(0.916)T(0.082)PK;ETPAATEAPS(0.385)S(0.549)T(0.065)PK ;; 294.52 1.13E-122 52884000 11523.5 12802 9713.4 11175.7 10548.8 11283.7 11843.5 14144 10076.6 12136.6 TRUE FALSE FALSE 10172.7328 13196.41445 10238.53579 11631.49335 9770.63604 11068.48222 12300.30776 15754.09579 9661.238283 12064.41096 0.84320178 1.093829984 0.848656086 0.964116142 0.809872614 0.917449037 1.019553114 1.305832157 0.800804806 1 13.55846986 -4.284485636 2.501202553 0.925172734 1.378149917 0.646471888 0.087870329 0.226661544 1.823776051 0.011688118 0.212734913 5.19E-05 4.284485636 0.452977183 INSTAT(ph)PDQDRDK ddPTM_HeLa_CUDC101_4h_R1 1 INSTATPDQDRDK 13 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 INST(0.004)AT(0.995)PDQDRDK 115.91 0.00097692 0 597.33 361.12 594.05 478.97 495.27 576.4 435.27 212.32 681.12 462.1 TRUE FALSE FALSE 527.3118829 372.2456792 626.1661399 498.5044669 458.7349188 565.4061303 452.0585097 236.4896506 653.0439453 459.3514086 1.147948766 0.810372347 1.363152759 1.085235524 0.998657912 1.230879278 0.984123486 0.514833842 1.421665272 1 8.843454443 -4.284064747 3.681285247 1.07907751 0.466064824 0.507222648 0.176577055 0.121693587 3.043729895 0.01812297 0.195900894 5.20E-05 4.284064747 -0.613012686 LVCY(ph)NNKITASY(ph)EDR ddPTM_HeLa_CUDC101_4h_R1 1 LVCYNNKITASYEDR 15 1 Q9Y624 Q9Y624 F11R Junctional adhesion molecule A 2 0 LVCY(0.999)NNKIT(0.003)AS(0.022)Y(0.976)EDR 60.401 0.0030381 0 1429.1 1126.5 1192.7 1147.7 1261.5 1098.1 908.57 638.13 1329 1162.9 TRUE FALSE FALSE 1261.583064 1161.20613 1257.18097 1194.508167 1168.441658 1077.155572 943.6138492 710.7721398 1274.218057 1155.983019 1.091350862 1.004518328 1.087542766 1.033326742 1.010777528 0.931809165 0.816286947 0.614863824 1.102280947 1 10.17490449 -4.284018396 0.988335302 1.04474426 0.395489332 0.944452712 0.033745565 0.325262523 0.247830663 0.005727704 0.222000165 5.20E-05 4.284018396 -0.649254928 QTETSVNASRS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 2 QTETSVNASRSPEK 14 1 U3KQJ0;H0YG46;J3KNE4;A0A0A0MTP3;Q99550-2;Q99550 U3KQJ0 MPHOSPH9 M-phase phosphoprotein 9 1 0 QTET(0.001)SVNAS(0.003)RS(0.996)PEK;QT(0.003)ET(0.021)S(0.004)VNAS(0.064)RS(0.909)PEK ; 65.949 0.031806 28167000 2520.71 3057.4 2539.68 2550.8 3174.6 3171.9 3233.6 3590.8 2891.1 3735.3 TRUE FALSE FALSE 2225.236195 3151.59487 2676.982783 2654.832649 2940.416083 3111.401292 3358.321035 3999.562157 2771.927634 3713.082269 0.599296227 0.84878132 0.720959728 0.714994298 0.791907065 0.837956465 0.904456403 1.077154199 0.746530088 1 11.85840157 -4.283948006 1.486774896 0.794795408 1.180183922 0.463189727 0.098942821 1.212625617 2.485684633 0.021639123 0.677543437 5.20E-05 4.283948006 0.385388514 NVALLSQLYHS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 NVALLSQLYHSPAR 14 0 Q15717;Q15717-2 Q15717 ELAVL1 ELAV-like protein 1 1 0 NVALLS(0.002)QLYHS(0.998)PAR;NVALLSQLYHS(1)PAR ; 213.71 5.56E-24 157638000 5303.3 2855.6 2923.4 3035.9 4299.3 3441 3079.7 1327.35 4085.3 4722.3 TRUE FALSE FALSE 4681.655213 2943.577651 3081.447847 3159.717124 3982.149204 3375.368658 3198.485061 1478.450159 3916.902205 4694.21155 0.997325145 0.627065402 0.656435658 0.673109231 0.848310555 0.719049115 0.681367899 0.314951753 0.834411096 1 12.19666714 -4.283868295 0.201706718 1.087077358 1.09E-12 0.432163305 0.143567473 7.263207064 0.272118441 0.183207038 2.0327091 5.20E-05 4.283868295 -1.087077358 S(ph)SGFISELPSEEGK ddPTM_HeLa_CUDC101_4h_R1 2 SSGFISELPSEEGK 14 0 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 S(0.996)S(0.004)GFISELPSEEGK;S(1)SGFISELPSEEGK ; 375.65 1.52E-275 43806000 7201.3 6439.7 6127.3 5865.5 7034.5 6715.3 5367.6 3110.4 5247.9 5238.3 TRUE FALSE FALSE 6357.17453 6638.099524 6458.560372 6104.720443 6515.57895 6587.216841 5574.63013 3464.475363 5031.579341 5207.142359 1.22085668 1.274806615 1.240327214 1.172374409 1.251277284 1.265034905 1.07057379 0.665331409 0.966284191 1 12.34627613 -4.283184284 3.61401102 1.152661594 0.620846848 0.676792356 0.10425489 0.132881772 3.137779131 0.016503005 0.183750714 5.21E-05 4.283184284 -0.531814746 RFMFEMPFTQT(ph)GK ddPTM_HeLa_CUDC101_4h_R1 1 RFMFEMPFTQTGK 13 1 A0A088AWN3;A0A0A0MSY4;Q9BZ29-3;Q9BZ29-5;Q9BZ29;Q9BZ29-4;H7BZ79;H0Y3S1 A0A088AWN3 DOCK9 Dedicator of cytokinesis protein 9 1 0 RFMFEMPFT(0.155)QT(0.845)GK 65.805 0.0032346 0 389.62 497.83 380.07 380.57 504.96 430.43 477.62 560.64 384.07 503.5 TRUE FALSE FALSE 343.9493342 513.1675522 400.6177338 396.0912896 467.7101068 422.2202649 496.0419634 624.4609914 368.238472 500.5051596 0.687204373 1.025299225 0.800426781 0.79138303 0.934476094 0.843588236 0.991082617 1.247661446 0.735733618 1 8.967241131 -4.283067788 1.909716532 0.858204033 1.35949996 0.577481003 0.103368664 0.509999291 1.979960654 0.017672771 0.444107891 5.21E-05 4.283067788 0.501295927 S(ph)SPELTR ddPTM_HeLa_CUDC101_4h_R1 3 SSPELTR 7 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.914)S(0.085)PELTR;S(0.924)S(0.075)PELTR;S(0.639)S(0.36)PELT(0.001)R ;; 114.89 0.012962 741790000 5240 3871.85 4945.2 4739.2 4242.9 3409.68 3403.05 2859.26 4890.3 5898 TRUE FALSE FALSE 4625.775143 3991.137109 5212.55247 4932.485061 3929.90972 3344.646035 3534.306778 3184.746601 4688.719764 5862.918434 0.788988487 0.68074239 0.889071293 0.84130201 0.670299231 0.570474598 0.602823802 0.543201588 0.799724543 1 12.51740327 -4.282964751 0.11259154 1.171311401 1.92E-15 0.580574976 0.091746339 15.02280887 0.28183324 0.646964148 2.919690039 5.21E-05 4.282964751 -1.171311401 DSSPSSSPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 DSSPSSSPSPK 11 0 Q6WKZ4;E7EX40;Q6WKZ4-2;Q6WKZ4-3 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 0 DSS(0.001)PS(0.007)S(0.017)S(0.378)PS(0.597)PK 120.59 0.0041147 4588100 5053.3 2651.1 4426.8 5572 3038.3 3291.5 2740.2 1156.8 2996.4 3660.6 TRUE FALSE FALSE 4460.959834 2732.777249 4666.126198 5799.250244 2814.170662 3228.720122 2845.890432 1288.485436 2872.887124 3638.826588 1.225933615 0.751005079 1.282316177 1.593714376 0.773373117 0.887297057 0.78209015 0.354093663 0.789509215 1 11.82925758 -4.282864887 0.965847373 1.11449135 2.22E-06 0.420448509 0.250975969 1.218920889 0.878677139 0.035810715 1.401919384 5.21E-05 4.282864887 -1.114489126 LAS(ph)PSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR ddPTM_HeLa_CUDC101_4h_R1 2 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 0 Q13263-2;Q13263;M0R0K9 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 1 0 LAS(0.525)PS(0.186)GS(0.217)T(0.021)S(0.024)S(0.028)GLEVVAPEGTSAPGGGPGTLDDSATICR;LAS(0.503)PS(0.14)GS(0.293)T(0.028)S(0.028)S(0.008)GLEVVAPEGTSAPGGGPGTLDDSATICR ; 119.46 3.40E-24 74215000 1458.47 1211.1 921.58 1181.79 1487.72 1472.54 1087.08 560.25 1300.26 1133.65 TRUE FALSE FALSE 1287.510357 1248.412555 971.4034024 1229.988504 1377.97386 1444.453753 1129.00904 624.0265954 1246.662732 1126.906999 1.142516959 1.107822168 0.862008491 1.091472948 1.222792884 1.281786122 1.001865318 0.553751637 1.106269402 1 10.13815274 -4.282809097 4.047929006 1.082762975 0.517656068 0.686813717 0.109822952 0.09999371 3.409372214 0.016322248 0.158202215 5.21E-05 4.282809097 -0.565106907 EHYPVSSPS(ph)SPSPPAQPGGVSR ddPTM_HeLa_CUDC101_4h_R1 2 EHYPVSSPSSPSPPAQPGGVSR 22 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 0 EHYPVS(0.005)S(0.244)PS(0.375)S(0.375)PSPPAQPGGVSR;EHYPVS(0.008)S(0.047)PS(0.464)S(0.464)PS(0.017)PPAQPGGVSR ; 233.29 7.09E-46 23312000 5430.1 5366.3 4851.8 4114.4 5811.6 4876.5 5153.7 5959.4 5772.1 5396.9 TRUE FALSE FALSE 4793.591909 5531.629342 5114.102984 4282.203016 5382.889846 4783.488887 5352.479935 6637.794007 5534.171595 5364.798999 0.893526842 1.031097222 0.953270194 0.798203813 1.003372139 0.891643636 0.997703723 1.237286618 1.031571098 1 12.3893084 -4.282614946 3.336883807 0.944586967 1.269722344 0.599570276 0.069789428 0.141323906 2.608417357 0.009156254 0.113824672 5.22E-05 4.282614946 0.325135377 ASVALTPTAPS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 ASVALTPTAPSR 12 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7;H7BZ26 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 ASVALTPTAPS(1)R;ASVALTPTAPS(1)R ; 133.88 0.0014413 104311000 5436.7 3296.5 4142.1 4309.6 4682.9 4837.2 5487.7 6354.8 3820.4 3905 TRUE FALSE FALSE 4799.418268 3398.061258 4366.034455 4485.364116 4337.451797 4744.938469 5699.362427 7078.204745 3662.921495 3881.772886 1.236398524 0.875388993 1.12475268 1.1554937 1.117389379 1.222363752 1.468236961 1.823446387 0.943620764 1 11.9225 -4.28255388 1.144860398 1.097073754 2.167933178 0.847015342 0.102587379 0.473847812 0.511205476 0.016326221 0.601376017 5.22E-05 4.28255388 1.070859424 IISIFSGT(ph)EK ddPTM_HeLa_CUDC101_4h_R1 1 IISIFSGTEK 10 0 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 IIS(0.001)IFS(0.46)GT(0.54)EK 139.32 0.0064442 12196000 3978.1 2388.9 2283.2 2516 2443.2 2780.7 3080.4 3834 2340.7 2997.3 TRUE FALSE FALSE 3511.793148 2462.499177 2406.636698 2618.613355 2262.970004 2727.66278 3199.21206 4270.447062 2244.215355 2979.471926 1.178662943 0.826488465 0.807739344 0.878885057 0.759520499 0.91548531 1.073751369 1.433289914 0.753225877 1 11.54084094 -4.282517423 3.559025217 1.000766127 1.474518244 0.42372128 0.155353075 0.22306154 5.021455108 0.023881977 0.272480066 5.22E-05 4.282517423 0.473752117 ASMSEFLES(ph)EDGEVEQQR ddPTM_HeLa_CUDC101_4h_R1 6 ASMSEFLESEDGEVEQQR 18 0 J3QQW9;Q15022 J3QQW9 SUZ12 Polycomb protein SUZ12 1 0 ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR ;;;;; 305.54 6.54E-125 120462100 9738 8983.76 8730.78 7591.88 10661.76 9348.95 9453.31 9803.2 9122.07 10158.08 TRUE FALSE FALSE 8596.526402 9260.538997 9202.792376 7901.509681 9875.263206 9170.634355 9817.927333 10919.15666 8746.054414 10097.65929 0.851338529 0.91709759 0.911378777 0.782509041 0.977975482 0.908194077 0.972297347 1.081355228 0.866146714 1 13.30173328 -4.282334687 1.951401855 0.917588153 1.127291322 0.444575196 0.059995603 0.664377603 2.726051311 0.00996888 0.245782324 5.22E-05 4.282334687 0.209703169 SQMTQEAS(ph)DEAEDMKEAMNR ddPTM_HeLa_CUDC101_4h_R1 2 SQMTQEASDEAEDMKEAMNR 20 1 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3 RAI14 Ankycorbin 1 0 SQMT(0.002)QEAS(0.998)DEAEDMKEAMNR;SQMT(0.006)QEAS(0.993)DEAEDMKEAMNR ; 90.762 0.001028 19939200 1740.71 1835.96 1720.19 1783.68 2322.1 1809.7 1932.31 2197.6 2417.4 2321.37 TRUE FALSE FALSE 1536.666613 1892.523751 1813.188675 1856.42618 2150.803309 1775.182988 2006.839844 2447.765901 2317.753749 2307.562388 0.665926356 0.820139798 0.785759329 0.804496637 0.932067241 0.769289271 0.869679561 1.060758276 1.004416505 1 11.17215394 -4.282232921 3.746155777 0.832924718 1.079994143 0.272759019 0.101210502 0.279753185 7.408846742 0.017219257 0.184199295 5.22E-05 4.282232921 0.247069426 INPPSSGGTSSS(ph)PIK ddPTM_HeLa_CUDC101_4h_R1 2 INPPSSGGTSSSPIK 15 0 A0A0C4DG88;P14859-4;P14859-5;P14859-3;P14859;P14859-2;P14859-6;A0A0A0MT46 A0A0C4DG88 POU2F1 "POU domain protein;POU domain, class 2, transcription factor 1" 1 0 INPPSSGGTS(0.001)S(0.07)S(0.93)PIK;INPPSSGGTSS(0.068)S(0.931)PIK ; 151.38 0.00019317 233470000 3924.9 3152.3 3677.4 3461.5 3024.8 3260.2 3392.1 3820 3428.8 3343.6 TRUE FALSE FALSE 3464.829172 3249.418627 3876.211368 3602.674932 2801.66653 3198.017117 3522.934433 4254.853359 3287.463413 3323.712118 1.042457664 0.977647435 1.166229574 1.0839311 0.842932971 0.962182344 1.059939702 1.28015099 0.989093909 1 11.69857971 -4.281858597 3.615349865 1.016527128 1.304511289 0.508008563 0.079637751 0.164699951 3.896119723 0.011016544 0.123660726 5.23E-05 4.281858597 0.287984161 ALSAAVADSLTNS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 ALSAAVADSLTNSPR 15 0 Q14687-3;Q14687;Q14687-2;H7C3B5 Q14687-3 GSE1 Genetic suppressor element 1 1 0 ALSAAVADSLTNS(1)PR 264.85 3.11E-70 29128000 1524.3 1431.6 1387.7 1417.8 1803.5 1911.5 1503.8 1269.9 1461.8 1820.3 TRUE FALSE FALSE 1345.623865 1475.705899 1462.72326 1475.624012 1670.459398 1875.041322 1561.80207 1414.460283 1401.543985 1809.472775 0.743655215 0.815544682 0.808369863 0.815499428 0.923174651 1.036236272 0.863125487 0.781697466 0.774559311 1 10.82135369 -4.281807789 5.50111824 0.876346755 0.779294522 0.05660333 0.09116871 0.337851267 35.35708739 0.015514088 0.113653271 5.23E-05 4.281807789 -0.097052233 SQGS(ph)PEDSAPQASPGPSK ddPTM_HeLa_CUDC101_4h_R1 1 SQGSPEDSAPQASPGPSK 18 0 Q9P107-2;Q9P107 Q9P107-2 GMIP GEM-interacting protein 1 0 S(0.048)QGS(0.943)PEDS(0.009)APQASPGPSK 153.17 5.20E-05 15793000 3581.5 3703.1 3343.5 3427.7 4123.1 3374.3 3543.3 4056.5 4114.9 3704.1 TRUE FALSE FALSE 3161.681999 3817.188122 3524.259724 3567.496422 3818.947127 3309.940849 3679.966268 4518.275563 3945.28208 3682.067848 0.858670217 1.036696845 0.95714144 0.968883945 1.037174567 0.898935323 0.999429239 1.227102745 1.071485438 1 11.8463005 -4.281765357 3.315877722 0.949046849 1.258618863 0.51829701 0.066606852 0.150315686 2.72082084 0.009121429 0.114977315 5.23E-05 4.281765357 0.309572014 SGSISVK(ac)IIR ddPTM_HeLa_CUDC101_4h_R1 1 SGSISVKIIR 10 1 Q8TF01 Q8TF01 PNISR Arginine/serine-rich protein PNISR 0 1 SGSISVK(1)IIR 84.817 0.034995 1042500 273.24 389.73 184.35 347.92 440.89 390.21 304.03 372.49 352.51 146.49 FALSE TRUE FALSE 241.2112214 401.7371194 194.3165186 362.1096814 408.3664231 382.7673944 315.7565389 414.8927559 337.9793886 145.618671 1.656458061 2.758829734 1.334420355 2.486698162 2.804354829 2.628559867 2.168379486 2.849172796 2.320989378 1 7.186051537 -7.518354235 0.392045007 0.932797486 2.698595887 0.141433515 0.576060844 0.436517321 0.187841011 0.269247097 0.24607118 3.03E-08 7.518354235 1.765798401 SRS(ph)PVDLR ddPTM_HeLa_CUDC101_4h_R1 1 SRSPVDLR 8 1 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 0 S(0.218)RS(0.782)PVDLR 94.363 0.013482 69145000 3474.1 2888.5 3053.5 3245.1 3182.4 3165.3 3386.3 4153.8 3155 3471.3 TRUE FALSE FALSE 3066.871264 2977.491261 3218.581446 3377.449205 2947.640692 3104.927176 3516.910725 4626.651802 3024.949565 3450.652553 0.888780084 0.862877736 0.932745733 0.978785651 0.854227033 0.899808697 1.019201635 1.340804886 0.876631164 1 11.7526535 -4.281692345 2.855353187 0.932591616 1.403533875 0.870939026 0.049151604 0.116579465 1.356995838 0.007997516 0.123834946 5.23E-05 4.281692345 0.470942258 SDTEISLEVTDVEES(ph)VEKEK ddPTM_HeLa_CUDC101_4h_R1 2 SDTEISLEVTDVEESVEKEK 20 1 P26374 P26374 CHML Rab proteins geranylgeranyltransferase component A 2 1 0 SDTEISLEVTDVEES(1)VEKEK;SDTEISLEVTDVEES(1)VEKEK ; 130.07 9.88E-06 23376000 4513.2 4020.9 3976 3422.4 4956.8 3974.2 5580 8807.5 4245.7 4253.3 TRUE FALSE FALSE 3984.169538 4144.779163 4190.954587 3561.980265 4591.146739 3898.398756 5795.222469 9810.110199 4070.690449 4228.001182 0.942329334 0.980316463 0.991237799 0.84247381 1.0858906 0.922042967 1.370676643 2.320271394 0.96279312 1 12.04576006 -4.281546737 2.136217047 0.968963864 2.655236798 0.976623985 0.063461847 0.057611901 0.300112853 0.008135386 0.182306384 5.23E-05 4.281546737 1.686272934 up TEELIESPKLESS(ph)EGEIIQTVDR ddPTM_HeLa_CUDC101_4h_R1 1 TEELIESPKLESSEGEIIQTVDR 23 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 TEELIES(0.004)PKLES(0.305)S(0.675)EGEIIQT(0.017)VDR 47.616 0.031829 9170200 1136.1 1141.9 869.85 1048.9 1311.3 920.43 1280.9 2124 1386.5 1201.6 TRUE FALSE FALSE 1002.92808 1177.080586 916.8767222 1091.678676 1214.568011 902.8743313 1330.304742 2365.787574 1329.347883 1194.45283 0.839654824 0.985455898 0.767612332 0.913957126 1.016840499 0.755889482 1.113735686 1.98064546 1.112934601 1 10.22213417 -4.281492847 3.187587996 0.912807352 2.112726827 0.894268136 0.108376282 0.057904226 0.930462239 0.012579912 0.167641424 5.23E-05 4.281492847 1.199919475 ISS(ph)TPPSGSR ddPTM_HeLa_CUDC101_4h_R1 2 ISSTPPSGSR 10 0 Q3Y452 Q3Y452 TDRG1 Testis development-related protein 1 1 0 IS(0.019)S(0.855)T(0.125)PPS(0.001)GSR;IS(0.145)S(0.727)T(0.124)PPS(0.004)GSR ; 117.25 0.0056549 780360000 7903.1 7392.3 7468.7 7414.8 7861 7357 7520.1 8241.3 7369.2 8076.4 TRUE FALSE FALSE 6976.710598 7620.048001 7872.480514 7717.207594 7281.109691 7216.677483 7810.152776 9179.45628 7065.438457 8028.361214 0.869008059 0.949141151 0.980583746 0.961243196 0.90692353 0.898897956 0.972820301 1.143378584 0.880059861 1 12.97088981 -4.281325382 3.491739242 0.937955488 1.164135604 0.701352296 0.041263102 0.146057941 3.098551275 0.007152874 0.084343183 5.23E-05 4.281325382 0.226180115 IT(ph)SPLMEPSSIEK ddPTM_HeLa_CUDC101_4h_R1 1 ITSPLMEPSSIEK 13 0 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 0 IT(0.627)S(0.373)PLMEPSSIEK 179.67 2.52E-07 37471000 4082.7 3576.1 3449.5 3753.8 4162.9 3739.8 4193.2 5351.2 3615.5 3992.7 TRUE FALSE FALSE 3604.132095 3686.275402 3635.990404 3906.896189 3855.811161 3668.469546 4354.933129 5960.358978 3466.46756 3968.951243 0.908081726 0.928778203 0.916108609 0.984364874 0.971493708 0.924291915 1.097250347 1.501746586 0.873396358 1 11.95454212 -4.281232756 2.368509329 0.95209184 1.6187969 0.949478148 0.039155961 0.082694918 0.569410092 0.005579332 0.110708853 5.23E-05 4.281232756 0.66670506 MEVGPFSTGQESPT(ph)AENAR ddPTM_HeLa_CUDC101_4h_R1 1 MEVGPFSTGQESPTAENAR 19 0 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 1 0 MEVGPFST(0.001)GQES(0.231)PT(0.768)AENAR 190.8 3.30E-11 16842000 1880.9 1555.9 1302.7 1351.5 1117.2 1435.6 1221.8 871.38 1393.8 1008.6 TRUE FALSE FALSE 1660.423753 1603.835435 1373.127902 1406.620012 1034.786382 1408.218322 1268.925235 970.574377 1336.346974 1002.600802 1.656116522 1.599674996 1.369565932 1.402971161 1.032102088 1.404565325 1.265633573 0.968056653 1.332880416 1 9.969531578 -4.281205564 3.25767008 1.333123978 0.924730836 0.248488659 0.19713461 0.487555223 8.361997658 0.037587469 0.487068103 5.23E-05 4.281205564 -0.408393142 GPTSTSIDNIDGT(ph)PVRDER ddPTM_HeLa_CUDC101_4h_R1 4 GPTSTSIDNIDGTPVRDER 19 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 GPTSTSIDNIDGT(1)PVRDER;GPTST(0.001)SIDNIDGT(0.999)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTS(0.001)T(0.006)S(0.069)IDNIDGT(0.924)PVRDER ;;; 310.9 1.22E-143 147757600 10290.99 8378.4 8117.16 8132.05 9372.2 7783.5 9133.59 10730.14 9127.5 9823.6 TRUE FALSE FALSE 9084.695752 8636.528573 8555.998223 8463.710149 8680.831478 7635.042706 9485.875626 11951.61576 8751.260587 9765.16879 0.930316306 0.884421842 0.876175149 0.866724409 0.888958672 0.781864899 0.971399044 1.22390263 0.896170949 1 13.25342927 -4.281168504 4.360697324 0.929876819 1.240471427 0.692920259 0.062376485 0.10283823 4.543348522 0.010476857 0.094506433 5.23E-05 4.281168504 0.310594608 RLFMS(ph)RT(ph)NRPPLSLSR ddPTM_HeLa_CUDC101_4h_R1 1 RLFMSRTNRPPLSLSR 16 3 H0YHA7;J3QQ67;Q07020-2;Q07020;F8VYV2;G3V203;A0A075B7A0 H0YHA7 RPL18 60S ribosomal protein L18 2 0 RLFMS(0.991)RT(1)NRPPLS(0.005)LS(0.004)R 68.751 0.0025288 0 2523.8 2135.7 2140.2 2236.1 2828.4 1721.6 1826.3 1270.2 1660.6 1687.7 TRUE FALSE FALSE 2227.96399 2201.498386 2255.905686 2327.297823 2619.754567 1688.763348 1896.741003 1414.794434 1592.149365 1677.661485 1.328017606 1.312242312 1.344672752 1.387227306 1.561551356 1.006617463 1.130586247 0.843313413 0.949028978 1 10.71223593 -4.281166404 1.557165021 1.222024417 0.725767428 0.298819148 0.184647619 1.196655759 2.742436435 0.029226496 0.892656117 5.23E-05 4.281166404 -0.496256989 SFSKEELMS(ph)SDLEETAGSTSIPK ddPTM_HeLa_CUDC101_4h_R1 4 SFSKEELMSSDLEETAGSTSIPK 23 1 O00567 O00567 NOP56 Nucleolar protein 56 1 0 SFSKEELMS(0.591)S(0.409)DLEETAGSTSIPK;SFS(0.001)KEELMS(0.586)S(0.411)DLEET(0.001)AGSTSIPK;SFSKEELMS(0.792)S(0.206)DLEET(0.001)AGSTSIPK;SFSKEELMS(0.619)S(0.38)DLEETAGSTSIPK ;;; 90.397 0.00013558 685272000 12275.1 11147.9 13377.4 12286.4 13846.9 14712.5 13449.4 14406.4 11584.2 13981.6 TRUE FALSE FALSE 10836.23139 11491.35359 14100.62271 12787.4925 12825.44177 14431.88358 13968.14786 16046.36634 11106.69437 13898.43682 0.779672673 0.826809067 1.014547383 0.920066959 0.92279743 1.038381781 1.005015747 1.154544684 0.79913263 1 13.76263501 -4.280791288 0.67410079 0.895430951 1.284836515 0.554992522 0.075406106 2.241727433 0.711498787 0.016315197 0.663751136 5.24E-05 4.280791288 0.389405564 SNS(ph)TTQVSQPR ddPTM_HeLa_CUDC101_4h_R1 3 SNSTTQVSQPR 11 0 Q9UPN4-3;Q9UPN4-2;I3L2J8;Q9UPN4 Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa 1 0 S(0.006)NS(0.643)T(0.188)T(0.163)QVSQPR;S(0.015)NS(0.963)T(0.022)TQVSQPR;S(0.001)NS(0.493)T(0.493)T(0.013)QVSQPR ;; 172.58 6.91E-07 263908000 6680.8 5193.72 4841.8 5312 5531.62 5420.7 6284.2 8766.7 5351.3 5691.3 TRUE FALSE FALSE 5897.686751 5353.732357 5103.562354 5528.64632 5123.563413 5317.309179 6526.583699 9764.665692 5130.717149 5657.447894 1.042464175 0.946315805 0.902096219 0.977233273 0.905631569 0.939877711 1.153626833 1.725984202 0.90689605 1 12.46593568 -4.280762264 2.746201784 0.991602262 1.848146518 0.944211258 0.055974999 0.072907657 0.758086777 0.008388459 0.137676541 5.24E-05 4.280762264 0.856544256 ENDPLRT(ph)PEALPEEK ddPTM_HeLa_CUDC101_4h_R1 1 ENDPLRTPEALPEEK 15 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 ENDPLRT(1)PEALPEEK 86.222 0.016988 20023000 4757.3 3767.7 4168.7 4304.6 4820.1 4667.6 3918.7 2637.9 4253.6 4337.4 TRUE FALSE FALSE 4199.656506 3883.778371 4394.072532 4480.160194 4464.530826 4578.573307 4069.845572 2938.187873 4078.264808 4311.600952 0.974036455 0.900774078 1.019127832 1.039094351 1.035469394 1.061919542 0.943929092 0.681460995 0.945881786 1 12.07400794 -4.280682587 3.614093514 0.994816555 0.652089809 0.811010273 0.045424813 0.078501562 1.85583343 0.006209928 0.070279737 5.24E-05 4.280682587 -0.342726746 SPVPSPGSS(ph)SPQLQVK ddPTM_HeLa_CUDC101_4h_R1 2 SPVPSPGSSSPQLQVK 16 0 Q8N3F8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 SPVPS(0.001)PGS(0.211)S(0.699)S(0.09)PQLQVK;SPVPSPGS(0.184)S(0.709)S(0.108)PQLQVK ; 226.39 8.31E-33 71218000 4613.2 5217.1 4083.6 4869.7 4259.3 4515.3 4882.2 6102.9 4687 5322.7 TRUE FALSE FALSE 4072.447689 5377.832667 4304.371768 5068.307415 3945.099925 4429.178176 5070.508089 6797.629467 4493.799876 5291.040344 0.769687514 1.01640364 0.813520875 0.957903755 0.745618946 0.837109129 0.95831968 1.284743458 0.84932255 1 12.3693357 -4.280617312 3.184633426 0.88408044 1.334688095 0.660292062 0.087956782 0.175218004 2.805950093 0.014210037 0.190630594 5.24E-05 4.280617312 0.450607655 NPEPDS(ph)DEHT(ph)PVEDEEPKK ddPTM_HeLa_CUDC101_4h_R1 1 NPEPDSDEHTPVEDEEPKK 19 1 A0A494C050;Q8N5F7 A0A494C050;Q8N5F7 NKAP NF-kappa-B-activating protein 2 0 NPEPDS(1)DEHT(1)PVEDEEPKK 72.899 0.013067 14369000 3444.3 2645.9 2935.2 2435 2892.5 2746.3 2227.5 1945.9 3160 2831.4 TRUE FALSE FALSE 3040.564375 2727.417043 3093.88579 2534.309825 2679.126038 2693.918903 2313.415421 2167.41339 3029.743462 2814.558707 1.080298793 0.96903896 1.099243652 0.900428838 0.951881384 0.957137222 0.821946053 0.770072191 1.076454172 1 11.45869303 -4.280468549 0.560579027 1.03668043 0.578433405 0.746552255 0.052267207 1.332164732 0.284698807 0.010139379 0.394462564 5.24E-05 4.280468549 -0.458247025 VAGPADAPMDS(ph)GAEEEKAGAATVK ddPTM_HeLa_CUDC101_4h_R1 2 VAGPADAPMDSGAEEEKAGAATVK 24 1 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 0 VAGPADAPMDS(1)GAEEEKAGAATVK;VAGPADAPMDS(1)GAEEEKAGAATVK ; 122.79 9.17E-09 155255000 5482.9 4613.1 4937.1 5108 5739.2 4417.7 4866.3 5843.1 5435.9 4530.8 TRUE FALSE FALSE 4840.202774 4755.224143 5204.01456 5316.326319 5315.83065 4333.439733 5053.994821 6508.254885 5211.829901 4503.8506 1.074681024 1.055813029 1.155458967 1.180395797 1.180285743 0.962163295 1.122149749 1.445042357 1.157194224 1 12.13694326 -4.280436466 3.750162694 1.062271289 1.477914136 0.623085259 0.077485241 0.108074691 2.876343572 0.011119078 0.120220748 5.24E-05 4.280436466 0.415642847 GNSRPGT(ph)PSAEGGSTSSTLR ddPTM_HeLa_CUDC101_4h_R1 1 GNSRPGTPSAEGGSTSSTLR 20 1 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 1 0 GNSRPGT(0.993)PS(0.007)AEGGSTSSTLR 193.38 6.83E-16 28062000 2225.8 2054.5 2323.1 2348.4 1822.4 1818.4 2085.8 2565.8 1786.1 2077.4 TRUE FALSE FALSE 1964.895098 2117.79671 2448.693813 2444.177903 1687.965183 1783.71705 2166.250005 2857.880301 1712.476202 2065.043532 0.951502991 1.025545794 1.185783144 1.183596309 0.817399322 0.863767287 1.049009365 1.38393223 0.829268815 1 11.01195648 -4.280410082 4.011257849 0.991353525 1.41221606 0.486397131 0.122816152 0.135901965 4.515172787 0.016070633 0.160066925 5.24E-05 4.280410082 0.420862535 RISQVS(ph)SGETEYNPTEAR ddPTM_HeLa_CUDC101_4h_R1 1 RISQVSSGETEYNPTEAR 18 1 H0Y764;A0A494C1V1;Q6ZNJ1-2;Q6ZNJ1-3;Q6ZNJ1;H7C3Y7 H0Y764 NBEAL2 Neurobeachin-like protein 2 1 0 RIS(0.094)QVS(0.68)S(0.206)GET(0.019)EYNPTEAR 103.14 0.0028642 9547000 1098.5 683.73 649.8 521.04 661.06 681.77 904.26 1504 821.42 658.57 TRUE FALSE FALSE 969.7354952 704.7949109 684.9301535 542.2902633 612.2949208 668.7663732 939.1376111 1675.209281 787.5607199 654.6527964 1.481297415 1.076593447 1.046249489 0.828363166 0.93529719 1.021558873 1.434558313 2.558927862 1.203020478 1 9.354586147 -4.280198415 2.938808554 1.148465589 2.766521562 0.858994451 0.178727439 0.136404708 1.722522341 0.033803843 0.507607387 5.25E-05 4.280198415 1.618055973 up LLEENETEAVTVPTPS(ph)PTPVR ddPTM_HeLa_CUDC101_4h_R1 4 LLEENETEAVTVPTPSPTPVR 21 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 0 LLEENETEAVTVPT(0.005)PS(0.748)PT(0.247)PVR;LLEENETEAVTVPT(0.005)PS(0.901)PT(0.094)PVR;LLEENETEAVTVPTPS(0.752)PT(0.248)PVR;LLEENETEAVTVPT(0.002)PS(0.756)PT(0.242)PVR ;;; 185.64 1.85E-13 116621100 11036.9 9014.3 8179.51 8360.1 9210.8 9159.9 8939.9 9168.2 9009 8611.5 TRUE FALSE FALSE 9743.171313 9292.019898 8621.719052 8701.061013 8531.337635 8985.190169 9284.714938 10211.87083 8637.645207 8560.278415 1.138183928 1.085481038 1.007177411 1.01644603 0.996619178 1.049637609 1.084627682 1.192936764 1.009037883 1 13.063442 -4.280050841 2.753032336 1.054755628 1.215864735 0.496146133 0.044899059 0.383943428 4.016342383 0.008322633 0.136692133 5.25E-05 4.280050841 0.161109107 ETPAATEAPSST(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 ETPAATEAPSSTPK 14 0 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 ETPAATEAPSS(0.071)T(0.929)PK;ETPAATEAPSS(0.018)T(0.982)PK;ETPAATEAPS(0.001)S(0.473)T(0.526)PK;ETPAATEAPSS(0.07)T(0.93)PK ;;; 252.2 1.44E-55 1944832000 21640.1 19009 17636.8 19725 18596.5 19380.6 20629.7 25426.6 15284.8 20909 TRUE FALSE FALSE 19103.48028 19594.64476 18590.29876 20529.47076 17224.67324 19010.94735 21425.39444 28321.06137 14654.75407 20784.63234 0.919115622 0.942746758 0.894425191 0.987723546 0.828721575 0.914663634 1.030828647 1.362596216 0.705076416 1 14.34322961 -4.279738361 2.887358261 0.944965916 1.42634898 0.69081602 0.089658198 0.105950407 1.270330683 0.007527002 0.116102809 5.25E-05 4.279738361 0.481383064 GIASTSDPPTANIKPTPVVST(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 GIASTSDPPTANIKPTPVVSTPSK 24 1 P12270 P12270 TPR Nucleoprotein TPR 1 0 GIASTSDPPTANIKPT(0.008)PVVS(0.185)T(0.774)PS(0.032)K 107.65 1.18E-06 87564000 4028.7 2875.9 2935.3 3037.8 3180.2 3579.7 2933.4 1749 3226.6 3409.4 TRUE FALSE FALSE 3556.461893 2964.50307 3093.991197 3161.694614 2945.602982 3511.423187 3046.542221 1948.09909 3093.598182 3389.120737 1.049375979 0.874711555 0.912918552 0.932895243 0.869134861 1.036086779 0.898918173 0.574809587 0.912802589 1 11.72669532 -4.279697391 2.804687256 0.988504788 0.507807043 0.696632651 0.069497066 0.158962309 1.752767319 0.010646662 0.170875217 5.25E-05 4.279697391 -0.480697745 ALPS(ph)EDEEGQDDKDFYLR ddPTM_HeLa_CUDC101_4h_R1 2 ALPSEDEEGQDDKDFYLR 18 1 Q8NF91;Q8NF91-8;Q8NF91-4;Q8NF91-2;E7ENN3;A0A0C4DG40;A0A5F9ZH87;A0A5F9ZHE1;Q5JV20;F8WAI0;A0A5F9ZH86;H0Y326;A0A5F9ZHB2;Q8NF91-11;Q8NF91-3;Q8NF91-9;H0Y325 Q8NF91 SYNE1 Nesprin-1 1 0 ALPS(1)EDEEGQDDKDFYLR;ALPS(1)EDEEGQDDKDFYLR ; 138.28 4.49E-05 30134000 4178.4 3406.4 3035.9 3125.5 3191.5 3268.5 2795.8 2016 2997.3 2547.4 TRUE FALSE FALSE 3688.614286 3511.347146 3200.029937 3252.9714 2956.069403 3206.158808 2903.634943 2245.493291 2873.750025 2532.247952 1.456656045 1.386652182 1.263711137 1.28461804 1.167369649 1.266131465 1.146662964 0.886758854 1.13486123 1 11.30620296 -4.279686141 2.374496461 1.239920519 0.810915543 0.443727102 0.120856071 0.570636421 3.945677883 0.024727727 0.493108573 5.25E-05 4.279686141 -0.429004975 SEPVS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 2 SEPVSPSR 8 0 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 S(0.017)EPVS(0.862)PS(0.12)R;S(0.001)EPVS(0.621)PS(0.378)R ; 107.55 0.012726 205590000 9749.1 7854 7565.7 7081.7 7357.2 7192.1 5821 4464.6 7214.1 7713.3 TRUE FALSE FALSE 8606.325277 8095.972431 7974.724627 7370.522336 6814.474014 7054.922675 6045.51792 4972.832017 6916.731745 7667.420949 1.122453734 1.05589252 1.040079145 0.961277904 0.888756997 0.92011678 0.788468243 0.648566454 0.902093649 1 12.90452567 -4.279447504 0.569991862 1.059383674 0.389606456 0.759859921 0.064383959 0.955411293 0.211271438 0.010702013 0.41977594 5.25E-05 4.279447504 -0.669777218 VS(ph)DFGGR ddPTM_HeLa_CUDC101_4h_R1 3 VSDFGGR 7 0 I3L4R8;P27694 I3L4R8 RPA1 "Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed" 1 0 VS(1)DFGGR;VS(1)DFGGR;VS(1)DFGGR ;; 106.68 0.0028254 82274000 9419.4 7644.5 7509.2 8455.2 7558.8 6803.2 6019.3 3552.11 8203.5 8700.6 TRUE FALSE FALSE 8315.272211 7880.017984 7915.170066 8800.039602 7001.202383 6673.440295 6251.466417 3956.467844 7865.348258 8648.848444 0.961431139 0.911106032 0.915170397 1.017481074 0.809495325 0.771598709 0.722809107 0.457456027 0.909409884 1 13.07829234 -3.967832103 0.576917482 0.979773882 9.30E-18 0.888264549 0.053113508 0.892131569 0.159407918 0.008713939 0.627871169 0.000107688 3.967832103 -0.979773882 down TVT(ph)PAS(ph)SAKTS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 1 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 3 0 T(0.245)VT(0.756)PAS(0.971)S(0.045)AKT(0.306)S(0.676)PAK 123.63 0.0017987 16209000 6245 4220.7 4865.6 4547.2 3927.9 5287.1 5463.8 6839.3 4495.1 4755.6 TRUE FALSE FALSE 5512.970567 4350.734764 5128.649054 4732.654471 3638.146642 5186.257376 5674.540596 7617.858267 4309.810075 4727.31348 1.166195259 0.920339805 1.084897178 1.001129815 0.769601309 1.097083449 1.20037324 1.611456126 0.911682734 1 12.20680482 -4.279031781 2.117507028 1.042734581 1.753229653 0.722954608 0.113785844 0.289468919 1.466078706 0.016779226 0.384519418 5.26E-05 4.279031781 0.710495072 AAATPES(ph)QEPQAK ddPTM_HeLa_CUDC101_4h_R1 1 AAATPESQEPQAK 13 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 0 AAAT(0.012)PES(0.988)QEPQAK 166.79 1.16E-05 7971500 2431.7 1641 2226.1 1975.5 2087.3 2394.1 2465.9 2949.3 1833.8 2618 TRUE FALSE FALSE 2146.659812 1691.557265 2346.4497 2056.069429 1933.324037 2348.436531 2561.010589 3285.036391 1758.209988 2602.42802 0.824868083 0.649991951 0.901638655 0.790058135 0.742892415 0.902402108 0.984085081 1.262296734 0.675603696 1 11.34564255 -4.2789659 2.083194386 0.87301875 1.361863559 0.553583022 0.115053993 0.433331791 2.100820907 0.016779772 0.391750312 5.26E-05 4.2789659 0.488844808 RLLEDGEDFNLGDALDSSNS(ph)MQTIQK ddPTM_HeLa_CUDC101_4h_R1 1 RLLEDGEDFNLGDALDSSNSMQTIQK 26 1 P05783 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 RLLEDGEDFNLGDALDS(0.116)S(0.359)NS(0.524)MQT(0.001)IQK 103.04 8.23E-07 8391900 1378.5 1211.4 1093.5 1094 1503.7 1185.1 1364.7 1809.4 1645.1 1259.8 TRUE FALSE FALSE 1216.91432 1248.721798 1152.617918 1138.618049 1392.775047 1162.496192 1417.336936 2015.374782 1577.288282 1252.306654 0.971738285 0.997137398 0.920395907 0.909216641 1.112167729 0.92828397 1.131781047 1.609330092 1.259506429 1 10.29037216 -4.278742157 2.57646371 0.982666541 1.727911881 0.743391035 0.103644098 0.081750734 0.707620604 0.007161444 0.129374023 5.26E-05 4.278742157 0.745245339 EAAGPAPS(ph)PMR ddPTM_HeLa_CUDC101_4h_R1 3 EAAGPAPSPMR 11 0 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 EAAGPAPS(1)PMR;EAAGPAPS(1)PMR;EAAGPAPS(1)PMR ;; 143.31 0.0012355 455542500 10968.7 9400.9 9842.3 8787.5 9928.9 7629.3 7343.5 4735.86 9377.8 9612.7 TRUE FALSE FALSE 9682.965613 9690.530586 10374.40451 9145.892233 9196.464828 7483.783814 7626.741255 5274.971159 8991.243115 9555.523233 1.013337038 1.014128724 1.085697168 0.957131495 0.962423993 0.783189327 0.79815004 0.552033733 0.94094723 1 13.22211916 -4.278719126 0.744649439 1.013550565 0.308919238 0.892205523 0.049044614 0.482271616 0.190536689 0.006862681 0.281894792 5.26E-05 4.278719126 -0.704631327 QHGNPHLYHSQGKGS(ph)Y(ph)KHDR ddPTM_HeLa_CUDC101_4h_R1 1 QHGNPHLYHSQGKGSYKHDR 20 2 Q70EK8 Q70EK8 USP53 Inactive ubiquitin carboxyl-terminal hydrolase 53 2 0 QHGNPHLY(0.026)HS(0.031)QGKGS(0.972)Y(0.97)KHDR 48.112 0.036882 5747500 996.38 878.01 929.43 1052.8 1021.6 1102.4 1242.2 1198.5 825.64 945.55 TRUE FALSE FALSE 879.5858468 905.0604474 979.6777972 1095.737735 946.2386033 1081.373557 1290.11207 1334.932395 791.6067697 939.9258265 0.935803467 0.962906244 1.042292668 1.16577043 1.00671625 1.150488183 1.372567956 1.420252915 0.842201318 1 9.876403102 -4.278668114 0.582619479 0.970564242 1.779157258 0.837748062 0.071712573 0.852185677 0.197228779 0.011646887 0.461007544 5.26E-05 4.278668114 0.808593016 GVS(ph)QEKEAQISSAIVSSVQSK ddPTM_HeLa_CUDC101_4h_R1 2 GVSQEKEAQISSAIVSSVQSK 21 1 Q12872;Q12872-2 Q12872 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 0 GVS(0.992)QEKEAQIS(0.006)S(0.002)AIVS(0.001)SVQSK;GVS(0.866)QEKEAQIS(0.095)S(0.034)AIVS(0.004)SVQSK ; 94.632 0.00023355 81106000 3598 3808.4 3512 3164.9 3960.9 3129 3456.4 3729 3723.6 3811.8 TRUE FALSE FALSE 3176.247894 3925.73229 3701.869343 3293.978302 3668.712298 3069.319538 3589.714506 4153.494287 3570.111632 3789.127244 0.838253162 1.03605185 0.976971504 0.869323749 0.968220928 0.810033377 0.947372383 1.096161205 0.942198929 1 11.88764987 -4.278607099 4.744560276 0.925768186 1.103857213 0.341540775 0.068354263 0.159893817 9.693142388 0.010682686 0.090349567 5.26E-05 4.278607099 0.178089027 QAGAPGGSSGSGGSPELS(ph)ALR ddPTM_HeLa_CUDC101_4h_R1 1 QAGAPGGSSGSGGSPELSALR 21 0 Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4 Q9Y2J4 AMOTL2 Angiomotin-like protein 2 1 0 QAGAPGGSSGSGGS(0.076)PELS(0.924)ALR 137.13 6.04E-07 7523900 1422 1150.4 1155.6 1004.3 1160.6 1348.2 1653.3 2569.3 1507 1745.6 TRUE FALSE FALSE 1255.315316 1185.84246 1218.075231 1045.259695 1074.98485 1322.485331 1717.068335 2861.778727 1444.880822 1735.217094 0.723434157 0.683397175 0.701972817 0.602379782 0.619510293 0.76214402 0.989540929 1.649233826 0.832680146 1 10.76090045 -4.278411622 2.662721724 0.799414807 1.800815973 0.834291464 0.119964418 0.18539348 1.759641675 0.023227342 0.40259309 5.27E-05 4.278411622 1.001401165 GYIFLEYAS(ph)PAHAVDAVK ddPTM_HeLa_CUDC101_4h_R1 3 GYIFLEYASPAHAVDAVK 18 0 P55884;P55884-2;C9JZG1 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 1 0 GYIFLEY(0.004)AS(0.996)PAHAVDAVK;GYIFLEYAS(1)PAHAVDAVK;GYIFLEYAS(1)PAHAVDAVK ;; 139.98 5.37E-05 58754800 7981.2 7207.71 7539.8 6398.49 7392.4 7388.6 6596.76 5301.47 7651.48 7148.6 TRUE FALSE FALSE 7045.655835 7429.771002 7947.424395 6659.448079 6847.07738 7247.674765 6851.199243 5904.967916 7336.082756 7106.079809 0.991496862 1.045551303 1.118397852 0.937147943 0.963551995 1.019925889 0.964132043 0.83097405 1.032367065 1 12.79483818 -4.277744612 2.679210431 1.002960528 0.800311662 0.567723854 0.047326802 0.253280568 2.443772963 0.006479475 0.111815122 5.28E-05 4.277744612 -0.202648866 RVS(ph)LVGADDLR ddPTM_HeLa_CUDC101_4h_R1 1 RVSLVGADDLR 11 1 A0A0G2JMS7;A0A0G2JNZ2;A0A669KB89;Q14160-2;Q14160;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 0 RVS(1)LVGADDLR 74.133 0.027573 13241000 3475.5 3593.2 2956.6 3482.6 3959.4 3884 2970.8 1831.2 3197.9 3066 TRUE FALSE FALSE 3068.107159 3703.902233 3116.442739 3624.635481 3667.32295 3809.919171 3085.384751 2039.656406 3066.081208 3047.763296 1.006675014 1.215285399 1.022534376 1.189277227 1.20328339 1.25007056 1.012343956 0.669230583 1.006010281 1 11.57353515 -4.277723866 4.463283803 1.062524141 0.647525114 0.594625004 0.103283923 0.11801178 5.727908958 0.01647627 0.148849504 5.28E-05 4.277723866 -0.414999027 SGVAITFLTK ddPTM_HeLa_CUDC101_4h_R1 1 SGVAITFLTK 10 0 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 0 125.48 0.02569 209950 182.91 0 211.13 203.62 157.26 71.914 0 0 0 112.72 FALSE FALSE TRUE 161.4695671 0 222.5443264 211.9245037 145.6592431 70.54236027 0 0 0 112.0495364 1.4410552 0 1.986124473 1.891346546 1.299954 0.629564053 0 0 0 1 6.80799287 -4.985379976 2.807965993 1.236072581 5.57E-10 0.292410038 0.645124267 0.173476448 2.742127322 0.074003648 0.255557778 1.03E-05 4.985379976 -1.23607258 SGVSLAALK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 SGVSLAALKK 10 1 P10412;P16402;P16403 P10412;P16402;P16403 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 0 1 ; SGVSLAALK(1)K;SGVSLAALK(1)K 129.85 0.0019907 2725500 4577.6 1348.6 1168.2 1467.74 2547.03 2074.44 2122.99 2405.03 1219.83 690.85 FALSE TRUE FALSE 4041.020667 1390.148768 1231.356426 1527.600781 2359.140671 2034.873513 2204.874435 2678.808894 1169.548091 686.7407935 5.884346329 2.024269973 1.793043951 2.224421202 3.435270911 2.963088159 3.210635594 3.900756907 1.703041529 1 9.423621854 SSTLSSSSMSLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SSTLSSSSMSLSPK 14 0 O15119-3;O15119-2;O15119 O15119-3 TBX3 T-box transcription factor TBX3 1 0 SSTLSSSSMS(0.038)LS(0.962)PK;SSTLSSSSMS(0.062)LS(0.938)PK ; 238.03 1.29E-43 49505000 4310 3817.5 3626.6 3283.3 3962.8 3568.8 2879.4 2163.5 3685.2 3611.4 TRUE FALSE FALSE 3804.788334 3935.11265 3822.664966 3417.207166 3670.472139 3500.731086 2990.459423 2409.784095 3533.294496 3589.919232 1.059853464 1.096156319 1.064833139 0.951889707 1.02243864 0.975155946 0.833015795 0.671264154 0.984226738 1 11.80973567 -4.277437326 1.076540994 1.033523675 0.485449802 0.89321623 0.039352993 0.384069974 0.355379366 0.006196678 0.237985338 5.28E-05 4.277437326 -0.548073873 IDSVAAQPTATS(ph)PVVYTR ddPTM_HeLa_CUDC101_4h_R1 1 IDSVAAQPTATSPVVYTR 18 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 IDSVAAQPT(0.041)AT(0.069)S(0.89)PVVYTR 164.01 1.45E-05 15443000 2150.5 2006.4 2084.6 1601 1686.7 1780.3 1438.4 760.75 2125.8 2191.4 TRUE FALSE FALSE 1898.42165 2068.214806 2197.299782 1666.2957 1562.275501 1746.343744 1493.87957 847.3507049 2038.173624 2178.365455 0.871489054 0.949434265 1.008691988 0.764929363 0.717177872 0.801676201 0.68578005 0.388984641 0.935643567 1 11.08903029 -3.967107274 0.467886514 0.950398969 2.73E-14 0.819784677 0.075694274 1.903094853 0.230412586 0.018142087 1.057646202 0.000107868 3.967107274 -0.950398969 down RVEHNQSYSQAGITETEWT(ph)S(ph)GS(ph)S(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 RVEHNQSYSQAGITETEWTSGSSK 24 1 P42167 P42167 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 4 0 RVEHNQS(0.024)Y(0.128)S(0.13)QAGIT(0.313)ET(0.411)EWT(0.748)S(0.748)GS(0.748)S(0.748)K 44.5 0.038635 93328000 302.51 262.11 226.93 189 155.46 262.55 204.35 156.45 270.08 167.3 TRUE FALSE FALSE 267.0502364 270.1852984 239.1985222 196.7082369 143.9920255 257.5422962 212.231848 174.2596356 258.9471881 166.3048922 1.605787015 1.624638307 1.438313204 1.1828169 0.865831568 1.548615274 1.276161183 1.047832288 1.557062963 1 7.377686799 -4.277213889 5.121410516 1.306766199 1.038529381 0.095769143 0.25161343 0.356421863 29.24653003 0.040393978 0.323611963 5.28E-05 4.277213889 -0.268236818 AEDGATPSPSNET(ph)PKK ddPTM_HeLa_CUDC101_4h_R1 3 AEDGATPSPSNETPKK 16 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGATPSPS(0.008)NET(0.992)PKK;AEDGATPSPSNET(1)PKK;AEDGATPSPS(0.002)NET(0.998)PKK ;; 265.27 1.21E-69 3814740000 12861.4 11676.2 11225.2 11084 11092.1 10756 12235.8 15125.4 12773.9 13655 TRUE FALSE FALSE 11353.80619 12035.92988 11832.06827 11536.05343 10273.85788 10550.84722 12707.7389 16847.2144 12247.35444 13573.77945 0.836451353 0.886704394 0.871685613 0.849877771 0.756889996 0.777296202 0.936197538 1.241158695 0.902280347 1 13.72853486 -4.277031585 4.126439254 0.889266477 1.2656388 0.721721453 0.068866837 0.114991019 4.231727585 0.012599813 0.12447539 5.28E-05 4.277031585 0.376372323 T(ph)VSEPNLK ddPTM_HeLa_CUDC101_4h_R1 2 TVSEPNLK 8 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;F8VWY3;C9JEB6;H0YI41;C9JAH2;C9JF80 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 T(0.96)VS(0.04)EPNLK;T(0.781)VS(0.219)EPNLK ; 134.23 0.024618 369960000 7647.9 6840.2 6645.5 6416.4 6965.9 6037.8 6686.3 7732 6951.1 6760.5 TRUE FALSE FALSE 6751.424755 7050.938454 7004.775832 6678.088526 6452.039435 5922.639025 6944.192831 8612.179626 6664.572716 6720.288245 1.004633211 1.04920179 1.042332646 0.993720549 0.960083734 0.88130729 1.033317706 1.28151938 0.991709354 1 12.7143074 -4.276839926 4.353185827 0.997244157 1.298599987 0.790288212 0.044571499 0.065485746 2.911464238 0.006323653 0.059022849 5.29E-05 4.276839926 0.30135583 SGYQDMPEYENFR ddPTM_HeLa_CUDC101_4h_R1 2 SGYQDMPEYENFR 13 0 F5H365;Q15436-2;Q15436 F5H365 SEC23A Protein transport protein Sec23A 0 0 ; ; 218.15 8.84E-25 23411000 2727.86 2675.53 2347.4 2194.86 2770.52 2406.39 2205.72 2369.33 2522 2066.42 FALSE FALSE TRUE 2408.104386 2757.959908 2474.307544 2284.375878 2566.144259 2360.49212 2290.795359 2639.04495 2418.042093 2054.128842 1.172323925 1.342642122 1.204553236 1.11208987 1.249261588 1.149145113 1.115215031 1.284751422 1.177161843 1 11.00431096 -8.763979667 0.837988947 1.008133549 1.200365941 0.106770732 0.087159322 0.338529536 0.467662409 0.035805486 0.014698676 1.72E-09 8.763979667 0.192232391 SES(ph)LESPR ddPTM_HeLa_CUDC101_4h_R1 1 SESLESPR 8 0 Q92974-2;Q92974;V9GYM8;A0A5F9ZI21;Q92974-3;Q5VY93 Q92974-2 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 S(0.004)ES(0.996)LESPR 118.71 0.0077047 32848000 1856.2 1500.2 1507.6 1809.4 2206.5 2618.5 3316.7 4222.9 1895.2 1758.4 TRUE FALSE FALSE 1638.61905 1546.419384 1589.105416 1883.195153 2043.730891 2568.556475 3444.62623 4703.617866 1817.079054 1747.940959 0.93745675 0.884709164 0.909129916 1.077379155 1.169221924 1.469475535 1.970676534 2.690947794 1.039554022 1 10.77144074 -4.276792195 0.864152198 0.956944653 3.676892409 0.992144119 0.049287161 0.128259193 0.07092669 0.008065823 0.328832855 5.29E-05 4.276792195 2.719947756 up ELS(ph)DLEEENR ddPTM_HeLa_CUDC101_4h_R1 2 ELSDLEEENR 10 0 Q5M775-4;Q5M775;Q5M775-5;Q5M775-3;Q5M775-2 Q5M775-4 SPECC1 Cytospin-B 1 0 ELS(1)DLEEENR;ELS(1)DLEEENR ; 109.39 0.0086122 27717000 3915.2 4368.4 3982.1 3473.8 3900.7 3843 3489.1 2925.89 4049.4 3679.3 TRUE FALSE FALSE 3456.266191 4502.985226 4197.384371 3615.476579 3612.953132 3769.701178 3623.675756 3258.961491 3882.482018 3657.41536 0.945002372 1.231193284 1.147636776 0.988533219 0.987843265 1.030700866 0.990775014 0.891055888 1.061537079 1 11.83660876 -4.276765575 3.529801894 1.009402456 0.878844049 0.126310374 0.087540019 0.471889854 10.35498188 0.013318867 0.159591169 5.29E-05 4.276765575 -0.130558407 ENQPENSQT(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 2 ENQPENSQTPTK 12 0 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 ENQPENSQT(0.999)PT(0.001)K;ENQPENS(0.002)QT(0.992)PT(0.005)K ; 206.67 1.37E-22 22163000 8626 6759.2 7341.6 7317.3 7190.7 6142.1 5336.7 3295.5 8125.5 8389.6 TRUE FALSE FALSE 7614.873356 6967.44294 7738.509103 7615.731122 6660.256387 6024.949676 5542.538307 3670.646399 7790.563451 8339.698286 0.913087392 0.835455037 0.927912358 0.913190245 0.798620784 0.722442164 0.664596981 0.44014139 0.934154112 1 13.02577948 -3.966730948 0.466282798 0.961535687 7.02E-13 0.926002177 0.043253582 1.09476066 0.131693658 0.010559414 0.613513872 0.000107962 3.966730948 -0.961535687 down RS(ph)DSLLSFR ddPTM_HeLa_CUDC101_4h_R1 2 RSDSLLSFR 9 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 RS(0.69)DS(0.31)LLSFR;RS(0.988)DS(0.012)LLSFR ; 103.43 0.0077458 113880000 4033.8 2901 2758.7 3015.7 3504.5 3148.4 3315.7 3952.5 3174.3 2974.3 TRUE FALSE FALSE 3560.964079 2990.376371 2907.843667 3138.693281 3245.980017 3088.349516 3443.58766 4402.436623 3043.45401 2956.608731 1.204408294 1.011421072 0.983506419 1.061585609 1.097872702 1.044558072 1.164708615 1.489015634 1.029373274 1 11.52972762 -4.276525261 2.812615015 1.079238536 1.556458896 0.804482953 0.063561243 0.179676409 1.988153953 0.011836549 0.192793002 5.29E-05 4.276525261 0.47722036 SESDLEDVGPTAEWNGDGSGS(ph)LRR ddPTM_HeLa_CUDC101_4h_R1 1 SESDLEDVGPTAEWNGDGSGSLRR 24 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 SESDLEDVGPTAEWNGDGS(0.182)GS(0.818)LRR 127.14 6.15E-09 6844800 1886.3 1234.4 1281.5 1319.2 1379.9 1503.5 1453.3 1541.2 1383.3 1277.7 TRUE FALSE FALSE 1665.190773 1272.430401 1350.781766 1373.002678 1278.107526 1474.823243 1509.354268 1716.643978 1326.279789 1270.100184 1.311070414 1.001834672 1.063523794 1.081019195 1.006304497 1.161186544 1.188374183 1.351581553 1.04423242 1 10.31072658 -4.276410576 1.872842231 1.119300654 1.419211147 0.399369216 0.094359832 0.929702932 3.389447307 0.018174008 0.480292114 5.29E-05 4.276410576 0.299910493 YSQSAPGSPVS(ph)AQPVIMAVPPRPSSLVAK ddPTM_HeLa_CUDC101_4h_R1 2 YSQSAPGSPVSAQPVIMAVPPRPSSLVAK 29 1 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 1 0 YSQSAPGS(0.266)PVS(0.734)AQPVIMAVPPRPSSLVAK;YSQS(0.001)APGS(0.288)PVS(0.71)AQPVIMAVPPRPSSLVAK ; 84.576 5.26E-07 55599000 5423.8 4727.9 4010.1 3900 3922.2 4018.8 3428.8 2570.7 4409.6 5793.2 TRUE FALSE FALSE 4788.030386 4873.560995 4226.898136 4059.058857 3632.86712 3942.148086 3561.049965 2863.338097 4227.834422 5758.741789 0.831436894 0.846289202 0.733996816 0.704851686 0.630843898 0.684550242 0.618372918 0.49721592 0.734159401 1 12.49153792 -4.275966119 0.133435323 1.137245571 2.45E-13 0.557879127 0.088184651 4.288244297 0.096971019 0.157668989 0.907096842 5.30E-05 4.275966119 -1.137245571 SHEGETAYIR ddPTM_HeLa_CUDC101_4h_R1 2 SHEGETAYIR 10 0 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 0 ; ; 205.18 5.89E-18 54144000 1067.03 755.22 641.33 410.89 870.43 684.42 550.29 427.6 778.79 736.88 FALSE FALSE TRUE 941.9543609 778.487433 676.0022397 427.6478702 806.220113 671.3658288 571.5148696 476.2762556 746.6879466 732.497005 1.285949778 1.062785824 0.922873725 0.583822005 1.100646293 0.916544128 0.780228268 0.650209151 1.019373378 1 9.51667905 -6.730801427 3.290630206 1.135788457 0.8225768 0.426300193 0.152819835 0.172158172 3.867771786 0.027102868 0.038145811 1.86E-07 6.730801427 -0.313211656 DLFAFQES(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 2 DLFAFQESPPR 11 0 E7EX48;P51957-3;P51957-2;P51957 E7EX48 NEK4 Serine/threonine-protein kinase Nek4 1 0 DLFAFQES(1)PPR;DLFAFQES(1)PPR ; 128.35 0.0024354 34148000 6023.1 5696.8 4687.3 5114.8 5702.3 5930.6 4973.4 3665.2 5071.3 5222.6 TRUE FALSE FALSE 5317.081348 5872.311656 4940.709616 5323.403652 5281.65269 5817.483686 5165.225704 4082.431553 4862.258868 5191.535743 1.024182749 1.131131894 0.951685563 1.025400559 1.017358437 1.120570863 0.994932128 0.786362987 0.936574283 1 12.34194566 -4.27591453 4.390758633 1.024156762 0.772249168 0.59627731 0.058674517 0.084336841 3.876352907 0.006879195 0.064100486 5.30E-05 4.27591453 -0.251907593 AQS(ph)YPDNHQEFSDYDNPIFEK ddPTM_HeLa_CUDC101_4h_R1 4 AQSYPDNHQEFSDYDNPIFEK 21 0 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 0 AQS(0.993)Y(0.007)PDNHQEFSDYDNPIFEK;AQS(0.777)Y(0.222)PDNHQEFS(0.001)DYDNPIFEK;AQS(0.984)Y(0.016)PDNHQEFSDYDNPIFEK;AQS(0.959)Y(0.041)PDNHQEFSDYDNPIFEK ;;; 92.463 0.00033529 144208000 13188.3 11948.8 11249.2 10402.3 13583.5 11463.2 11820.3 13192.3 12572.5 12259.3 TRUE FALSE FALSE 11642.38747 12316.92837 11857.36578 10826.55076 12581.47227 11244.55856 12276.21293 14694.05811 12054.25623 12186.38114 0.955360524 1.010712551 0.973001389 0.88841393 1.03242071 0.922715155 1.00737149 1.205777001 0.989157986 1 13.57298215 -4.275878898 3.792036777 0.974416785 1.226087531 0.751843693 0.04010215 0.08374139 2.317671345 0.005205699 0.057314023 5.30E-05 4.275878898 0.251670747 RPS(ph)EGPQPLVR ddPTM_HeLa_CUDC101_4h_R1 2 RPSEGPQPLVR 11 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 RPS(1)EGPQPLVR;RPS(1)EGPQPLVR ; 71.513 0.030491 24190000 2497 2120.38 1946.21 2084.58 2492.1 2720.9 2167.6 1876.7 2176.48 2346.3 TRUE FALSE FALSE 2204.305445 2185.706395 2051.428 2169.598183 2308.262748 2669.003366 2251.205058 2090.335942 2086.764573 2332.344103 0.945103016 0.937128613 0.879556321 0.930222166 0.989675042 1.144343736 0.965211375 0.896238226 0.89470699 1 11.18756494 -4.275860554 6.124736619 0.973943588 0.894767075 0.068064863 0.070207078 0.220714403 38.74749849 0.009477204 0.068282582 5.30E-05 4.275860554 -0.079176513 (ac)AQRHS(ph)DSSLEEK ddPTM_HeLa_CUDC101_4h_R1 2 AQRHSDSSLEEK 12 1 Q5VV41 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 AQRHS(0.899)DS(0.097)S(0.004)LEEK;AQRHS(0.922)DS(0.075)S(0.003)LEEK ; 68.168 0.00041884 39179000 13373.8 10772.5 11490.8 10740.4 15842.2 12305.9 10261.2 5898.1 10896 10242.8 TRUE FALSE FALSE 11806.14344 11104.38796 12112.02741 11178.43994 14673.55247 12071.18546 10656.97792 6569.515863 10446.86227 10181.87537 1.159525432 1.090603406 1.189567439 1.097876327 1.44114438 1.185556199 1.046661596 0.645216684 1.026025353 1 13.31371569 -4.27582271 3.529540714 1.119708358 0.595881617 0.613264141 0.117848421 0.160115036 3.512058681 0.018039634 0.217585091 5.30E-05 4.27582271 -0.523826741 LQS(ph)EPESIRK ddPTM_HeLa_CUDC101_4h_R1 1 LQSEPESIRK 10 1 P09496-2;P09496-4;P09496-3;P09496;F8WF69 P09496-2 CLTA Clathrin light chain A 1 0 LQS(0.986)EPES(0.014)IRK 82.171 0.0030087 0 1177.1 967.54 1060.4 1150.7 1081.8 1167.4 1523.5 2240.7 1213 1107.1 TRUE FALSE FALSE 1039.122122 997.3487606 1117.728432 1197.63052 1001.997769 1145.13379 1582.261905 2495.772231 1162.999627 1100.51492 0.94421448 0.906256465 1.015641325 1.0882456 0.910480859 1.04054363 1.437746892 2.267822258 1.056777701 1 10.10396299 -4.27573055 1.720044013 0.974537845 2.697265689 0.978264039 0.058112522 0.079556939 0.23254864 0.007741103 0.222346995 5.30E-05 4.27573055 1.722727844 up VEQATKPS(ph)FESGR ddPTM_HeLa_CUDC101_4h_R1 2 VEQATKPSFESGR 13 1 P38159;P38159-2;H0Y6E7;H3BT71 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 VEQATKPS(1)FESGR;VEQAT(0.001)KPS(0.999)FESGR ; 178.67 4.94E-07 315570000 6400 5911 5888.8 6075.6 5775.7 5456 6213.8 7758.4 5688.8 6891 TRUE FALSE FALSE 5649.801702 6093.110904 6207.166341 6323.389229 5349.638118 5351.93589 6453.468347 8641.584895 5454.305256 6850.012026 0.824787122 0.88950368 0.906154079 0.923120895 0.780967697 0.781303138 0.942110514 1.261543026 0.796247545 1 12.74189081 -4.275680231 4.171353414 0.895304958 1.28670004 0.716123237 0.072806885 0.101847976 3.900834378 0.011752249 0.115892947 5.30E-05 4.275680231 0.391395082 SHLGNVHDQDN ddPTM_HeLa_CUDC101_4h_R1 1 SHLGNVHDQDN 11 0 Q8WW12;Q8WW12-3 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 0 0 97.452 0.015054 3712400 663.11 245.97 731.75 753.77 560.94 521.92 691.47 323.74 754.89 1127.3 FALSE FALSE TRUE 585.381251 253.5480442 771.3106184 784.5119987 519.5605738 511.9652456 718.1402295 360.593253 723.7731147 1120.594769 0.522384422 0.226262027 0.688304675 0.700085365 0.463647152 0.456869209 0.640856311 0.321787378 0.645883003 1 10.13004895 -9.042597651 0.756415054 1.013460033 0.507937818 0.256268994 0.179375558 0.365228073 0.369187547 0.108449962 0.030157165 9.07E-10 9.042597651 -0.505522215 S(ph)LQLMDNR ddPTM_HeLa_CUDC101_4h_R1 2 SLQLMDNR 8 0 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 S(1)LQLMDNR;S(1)LQLMDNR ; 108.56 0.012262 113781000 7746.1 4825 4713.6 5272.4 6770.7 6061.8 4996.6 2641.8 4952.9 4693.3 TRUE FALSE FALSE 6838.1139 4973.652531 4968.431474 5487.431261 6271.23895 5946.181265 5189.320536 2942.531833 4748.739366 4665.384043 1.46571297 1.066075694 1.064956588 1.176201404 1.34420637 1.274532002 1.112302972 0.630715887 1.017866766 1 12.18778013 -4.27518429 3.253237685 1.210759222 0.558142727 0.545053137 0.145733097 0.213342943 3.628397503 0.025441973 0.343277101 5.31E-05 4.27518429 -0.652616495 ESENSGDSGYPS(ph)EK ddPTM_HeLa_CUDC101_4h_R1 2 ESENSGDSGYPSEK 14 0 O00418 O00418 EEF2K Eukaryotic elongation factor 2 kinase 1 0 ESENSGDSGYPS(1)EK;ESENSGDSGYPS(1)EK ; 171.78 1.57E-11 15321000 4212.2 2861 2210.53 3665.2 3703.1 3920.2 5015.5 7304.5 2918.8 3903.4 TRUE FALSE FALSE 3718.452301 2949.144019 2330.037938 3814.682698 3429.929691 3845.428716 5208.949515 8136.014754 2798.485829 3880.182403 0.958318944 0.760052934 0.600497012 0.983119426 0.883960942 0.991043285 1.342449652 2.096812446 0.721225329 1 11.92190876 -4.275021614 1.724089624 0.927333707 2.484629138 0.882664943 0.137842434 0.224230199 0.658574896 0.019746621 0.567747904 5.31E-05 4.275021614 1.557295431 up FVPAENDSILMNPAQDGEVQLS(ph)QNDDK ddPTM_HeLa_CUDC101_4h_R1 1 FVPAENDSILMNPAQDGEVQLSQNDDK 27 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 FVPAENDS(0.005)ILMNPAQDGEVQLS(0.995)QNDDK 57.02 0.024383 5221400 385.37 304.67 343.92 457.29 422.86 352.69 428.24 651.45 542.64 437.66 TRUE FALSE FALSE 340.1975128 314.0565216 362.5133555 475.9402628 391.6664603 345.9630259 444.7573603 725.6084347 520.2721495 435.0567789 0.781961181 0.721874792 0.833255274 1.093972755 0.900265159 0.795213505 1.022297277 1.66784767 1.195871837 1 8.765059888 -4.274971921 3.203716309 0.886870017 1.769003996 0.710982086 0.142061907 0.107457676 1.743753521 0.016787411 0.231542456 5.31E-05 4.274971921 0.882133979 HTVLYIS(ph)PPPEDLLDNSR ddPTM_HeLa_CUDC101_4h_R1 3 HTVLYISPPPEDLLDNSR 18 0 O94916-2;O94916;O94916-4;O94916-5 O94916-2 NFAT5 Nuclear factor of activated T-cells 5 1 0 HT(0.007)VLY(0.005)IS(0.988)PPPEDLLDNSR;HT(0.003)VLY(0.047)IS(0.95)PPPEDLLDNSR;HTVLYIS(1)PPPEDLLDNSR ;; 131.18 2.84E-05 10942000 2988.38 3018.56 2628.59 3018.4 3270.85 2851.75 2400.4 1478.16 3622.12 2950.63 TRUE FALSE FALSE 2638.086626 3111.558256 2770.699526 3141.503399 3029.565912 2797.35762 2492.984232 1646.427759 3472.81468 2933.079522 0.899425538 1.060850288 0.944638393 1.071059743 1.032895934 0.953727166 0.849954532 0.561330761 1.184016545 1 11.51820047 -4.274948072 2.001222204 0.973393929 0.447276905 0.715614303 0.08506027 0.230749096 0.998305618 0.00881573 0.219202616 5.31E-05 4.274948072 -0.526117024 (ac)AAAAAAAGDS(ph)DSWDADAFSVEDPVRK ddPTM_HeLa_CUDC101_4h_R1 8 AAAAAAAGDSDSWDADAFSVEDPVRK 26 1 O75822-2;O75822;O75822-3 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 AAAAAAAGDS(0.992)DS(0.008)WDADAFSVEDPVRK;AAAAAAAGDS(0.717)DS(0.283)WDADAFSVEDPVRK;AAAAAAAGDS(0.5)DS(0.5)WDADAFSVEDPVRK;AAAAAAAGDS(0.927)DS(0.073)WDADAFSVEDPVRK;AAAAAAAGDS(0.997)DS(0.003)WDADAFSVEDPVRK;AAAAAAAGDS(0.839)DS(0.161)WDADAFSVEDPVRK;AAAAAAAGDS(0.946)DS(0.054)WDADAFSVEDPVRK;AAAAAAAGDS(0.5)DS(0.5)WDADAFSVEDPVRK ;;;;;;; 147.08 6.20E-31 373307900 15623.49 14243.63 12754.92 11732.15 15598.91 13338.45 13875.33 16167.17 14851.03 13979.37 TRUE FALSE FALSE 13792.12819 14682.45936 13444.48956 12210.63779 14448.20949 13084.04129 14410.50613 18007.57528 14238.86426 13896.22009 0.992509337 1.056579362 0.967492561 0.878702101 1.03972227 0.941553977 1.03700906 1.295861405 1.024657365 1 13.76240489 -4.274568778 3.511294295 0.990240961 1.328469113 0.781578692 0.048580935 0.086550724 1.866761571 0.006191492 0.075840952 5.31E-05 4.274568778 0.338228152 SHPLDPIDTVDFER ddPTM_HeLa_CUDC101_4h_R1 4 SHPLDPIDTVDFER 14 0 P47897;P47897-2;A0A1B0GVU9;A0A0U1RQT0;C9J165;A0A0U1RQE9;A0A0U1RRI9;A0A0U1RQU2;A0A0U1RQM8;A0A0U1RQL2 P47897 QARS Glutamine--tRNA ligase 0 0 ;;; ;;; 160.48 4.32E-05 40972700 13520.9 13420.3 10751.5 12085.6 14544.9 13063.1 12786.3 11176.8 13572.2 12890 FALSE FALSE TRUE 11936.0006 13833.76354 11332.75861 12578.50301 13471.9517 12813.94313 13279.47187 12449.12173 13012.74817 12813.32971 0.931529967 1.079638459 0.884450714 0.981673249 1.051401315 1.000047874 1.036379472 0.971575853 1.01556336 1 13.64535781 -5.980870805 23.53948651 0.969686291 1.015482253 0.060285324 0.052656414 178.1981248 219279.4776 0.007364803 0.01334791 1.05E-06 5.980870805 0.045795962 TAPS(ph)PLVEAK ddPTM_HeLa_CUDC101_4h_R1 2 TAPSPLVEAK 10 0 Q8TEH3;Q8TEH3-7;Q8TEH3-6;A0A0A0MS48;Q8TEH3-4;Q8TEH3-3;Q8TEH3-5;Q8TEH3-2 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 0 T(0.12)APS(0.88)PLVEAK;T(0.007)APS(0.993)PLVEAK ; 166.24 1.68E-05 134759000 11505.8 9565.9 9491.2 8821.2 10896.3 9758.1 10178.2 11189.3 8914.4 11121 TRUE FALSE FALSE 10157.10757 9860.614041 10004.32298 9180.966664 10092.50166 9571.980501 10570.77658 12463.04468 8546.944659 11054.8518 0.918791835 0.891971618 0.904971244 0.830492062 0.912947712 0.865862399 0.956211515 1.12738234 0.773139687 1 13.43239206 -4.274240213 4.343921702 0.933250776 1.13952452 0.425732412 0.069560764 0.130305404 5.781647709 0.00845889 0.0807795 5.32E-05 4.274240213 0.206273743 AQTSTDAPTSAPSAPPST(ph)PTPSAGKR ddPTM_HeLa_CUDC101_4h_R1 1 AQTSTDAPTSAPSAPPSTPTPSAGKR 26 1 Q8IWZ8;B4DVK3;V9GZ08;Q8IWZ8-2 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 0 AQTSTDAPTSAPSAPPS(0.198)T(0.768)PT(0.033)PS(0.001)AGKR 161.04 2.26E-10 10932000 4478.5 3930.1 4091.1 3552.3 5235.9 4042.5 3502.7 2178 4161.3 3869.2 TRUE FALSE FALSE 3953.537019 4051.181723 4312.277241 3697.178148 4849.658088 3965.396048 3637.800312 2425.934716 3989.769453 3846.185826 1.027911078 1.05329849 1.12118276 0.961258326 1.260900619 1.0309944 0.945820217 0.630737782 1.037331432 1 11.90921275 -4.274237502 2.529291403 1.038548046 0.549611626 0.719649091 0.080131646 0.205585234 1.676841986 0.011173372 0.211962499 5.32E-05 4.274237502 -0.488936419 YLS(ph)FT(ph)PPEKDGFPSGTPALNAK ddPTM_HeLa_CUDC101_4h_R1 2 YLSFTPPEKDGFPSGTPALNAK 22 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 2 0 Y(0.015)LS(0.982)FT(0.961)PPEKDGFPS(0.033)GT(0.009)PALNAK;Y(0.015)LS(0.969)FT(0.97)PPEKDGFPS(0.031)GT(0.016)PALNAK ; 62.677 0.016138 98654000 8255.2 7566 6665.8 6544.6 9158.9 8257.2 6794.3 4876.9 7403.6 6886.1 TRUE FALSE FALSE 7287.53797 7799.099492 7026.173311 6811.517076 8483.266194 8099.707667 7056.358427 5432.066583 7098.420474 6845.141171 1.064629317 1.139362841 1.026446809 0.995087889 1.239312088 1.183278396 1.030856523 0.793565311 1.037001326 1 12.74086458 -4.274123117 4.634907831 1.060538995 0.779714669 0.529833509 0.079420512 0.121301567 6.846318143 0.012009168 0.107661702 5.32E-05 4.274123117 -0.280824326 (ac)S(ph)EGESQTVLSSGSDPK ddPTM_HeLa_CUDC101_4h_R1 3 SEGESQTVLSSGSDPK 16 0 F8W6G1;Q9UHY1;C9JDW7;C9JHZ6 F8W6G1 NRBP1 Nuclear receptor-binding protein 1 0 S(0.863)EGES(0.137)QTVLSSGSDPK;S(0.827)EGES(0.173)QTVLSSGSDPK;S(0.692)EGES(0.308)QTVLSSGSDPK ;; 98.439 8.39E-07 45374600 10947.6 9740.2 8713.8 8573.7 10445.9 9144.6 9594.1 10642.2 9681.6 10172.4 TRUE FALSE FALSE 9664.338923 10040.28402 9184.894386 8923.372545 9675.326768 8970.181991 9964.147651 11853.66503 9282.52035 10111.89411 0.955739727 0.992918231 0.908325808 0.882463013 0.956826353 0.88709216 0.985388844 1.172249719 0.917980375 1 13.30376564 -4.274083553 4.351538692 0.960501322 1.185455521 0.706387776 0.043288427 0.09123301 4.075033554 0.006473244 0.061783679 5.32E-05 4.274083553 0.224954199 AADGGERPLAAS(ph)PPGTVK ddPTM_HeLa_CUDC101_4h_R1 3 AADGGERPLAASPPGTVK 18 1 B9EGQ5;A0A669KBG4;M0QXA7;A0A669KBH9;A0A2R8YFV2;A0A669KAV7;O95785-4;O95785-3;O95785;O95785-2 B9EGQ5 WIZ Protein Wiz 1 0 AADGGERPLAAS(0.999)PPGT(0.001)VK;AADGGERPLAAS(0.994)PPGT(0.006)VK;AADGGERPLAAS(0.962)PPGT(0.038)VK ;; 113.86 0.00021152 152492000 6677.2 6647.3 6506.8 5923.7 6786.3 6280.6 4938.88 3560.9 7407 7023.2 TRUE FALSE FALSE 5894.508738 6852.095434 6858.57729 6165.29409 6285.688169 6160.808019 5129.374256 3966.258462 7101.680325 6981.425694 0.844313038 0.981475093 0.982403536 0.883099579 0.900344492 0.882457007 0.734717303 0.568115831 1.017224939 1 12.76930597 -4.273965018 1.112605928 0.931070116 0.384726786 0.841598857 0.052513336 0.566346892 0.564277154 0.009387215 0.359866848 5.32E-05 4.273965018 -0.546343331 SNST(ph)TQVSQPR ddPTM_HeLa_CUDC101_4h_R1 1 SNSTTQVSQPR 11 0 Q9UPN4-3;Q9UPN4-2;I3L2J8;Q9UPN4 Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa 1 0 S(0.007)NS(0.04)T(0.951)T(0.002)QVSQPR 145.83 0.0049441 17564000 3177.4 2476.5 2686.1 2523.6 2753.5 2932.5 3266.7 4172.7 2618.6 2744.4 TRUE FALSE FALSE 2804.949989 2552.79803 2831.318691 2626.523316 2550.379791 2876.567448 3392.697713 4647.703301 2510.6602 2728.076187 1.028178759 0.93575027 1.037844436 0.962774914 0.934863844 1.054430761 1.243622788 1.703655977 0.920304283 1 11.41366822 -4.273650349 1.736889945 1.000773401 1.935026032 0.961310866 0.044346296 0.103329204 0.30854687 0.005496892 0.157948748 5.33E-05 4.273650349 0.934252631 ATSVALPGWS(ph)PSETR ddPTM_HeLa_CUDC101_4h_R1 4 ATSVALPGWSPSETR 15 0 Q16513-3;Q16513-2;Q16513;Q16513-4;B1AL79;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 ATSVALPGWS(0.822)PS(0.167)ET(0.01)R;ATSVALPGWS(0.905)PS(0.079)ET(0.016)R;ATSVALPGWS(0.764)PS(0.235)ET(0.001)R;ATS(0.001)VALPGWS(0.968)PS(0.026)ET(0.005)R ;;; 149.6 0.00023083 115001500 12551 10672.7 10315 9992.8 11908.1 11626.9 9976.3 7101.9 11951.1 10202.8 TRUE FALSE FALSE 11079.79081 11001.51324 10872.6601 10400.34958 11029.66319 11405.13625 10361.08923 7910.351589 11458.4706 10142.11329 1.092453859 1.084735786 1.072031024 1.025461783 1.087511337 1.124532524 1.021590761 0.779951018 1.129791225 1 13.30807067 -4.273596306 4.058609205 1.056132801 0.759022197 0.8098271 0.042051959 0.075427651 2.632198947 0.006208307 0.064165135 5.33E-05 4.273596306 -0.297110604 TKS(ph)PTDDEVTPSAVVR ddPTM_HeLa_CUDC101_4h_R1 3 TKSPTDDEVTPSAVVR 16 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 T(0.055)KS(0.908)PT(0.037)DDEVTPSAVVR;T(0.001)KS(0.5)PT(0.5)DDEVTPSAVVR;T(0.26)KS(0.667)PT(0.072)DDEVT(0.001)PSAVVR ;; 194.37 1.85E-15 174670000 5382.9 4643.81 4925.77 4804.58 5153.9 4519.65 4636.01 4494.45 4854.29 4815.46 TRUE FALSE FALSE 4751.924622 4786.880282 5192.072026 5000.53154 4773.707065 4433.445207 4814.822459 5006.080021 4654.194112 4786.81743 0.992710646 1.00001313 1.08466055 1.044646388 0.997261152 0.926178045 1.005850449 1.045805505 0.972294051 1 12.22485107 -4.273223217 6.055243891 1.001572168 1.04673353 0.098172805 0.039257381 0.225711249 38.93774982 0.005441914 0.040467528 5.33E-05 4.273223217 0.045161362 TEAACLSAPHLAS(ph)PPATPK ddPTM_HeLa_CUDC101_4h_R1 1 TEAACLSAPHLASPPATPK 19 0 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 1 0 TEAACLSAPHLAS(0.996)PPAT(0.004)PK 56.404 0.026765 24139000 1977.6 1847.9 1739.6 1499 1961.3 1795.9 1581.9 1215.6 2090.2 1538.4 TRUE FALSE FALSE 1745.788726 1904.831609 1833.648038 1560.135699 1816.618806 1761.6462 1642.914413 1353.97899 2004.041071 1529.249528 1.141598342 1.245598951 1.19905091 1.020196946 1.187915231 1.15196779 1.074327232 0.885387875 1.310473559 1 10.57860812 -4.272954529 4.080633116 1.100632804 0.86918733 0.29164028 0.101649704 0.200377088 7.129834703 0.012927482 0.133471273 5.33E-05 4.272954529 -0.231445474 DGGEALVS(ph)PDGTVTEAPR ddPTM_HeLa_CUDC101_4h_R1 1 DGGEALVSPDGTVTEAPR 18 0 Q96HN2-2;Q96HN2 Q96HN2-2 AHCYL2 Putative adenosylhomocysteinase 3 1 0 DGGEALVS(0.998)PDGT(0.001)VT(0.001)EAPR 118.23 9.98E-05 7133200 2316.7 1905.2 1728.8 1596.3 1693.1 1740 1543.7 614.55 2286.1 2123.7 TRUE FALSE FALSE 2045.139938 1963.896954 1822.264157 1661.404014 1568.203386 1706.812399 1603.241026 684.5078879 2191.86599 2111.068138 0.968770217 0.930285915 0.86319533 0.786996869 0.742848304 0.808506541 0.759445419 0.324247179 1.038273446 1 11.04375743 -3.96503167 0.385295949 0.994088947 5.26E-18 0.803065418 0.085679841 2.192041207 0.188609462 0.023241506 1.052706599 0.000108385 3.96503167 -0.994088947 down GGGDVLEPVSSDSLST(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 GGGDVLEPVSSDSLSTK 17 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 GGGDVLEPVSS(0.014)DS(0.014)LS(0.264)T(0.708)K 243.83 4.60E-55 5031400 2434.9 2019.4 1722.7 1952.9 2022.2 2228.8 2297.5 2758.5 2009 2550 TRUE FALSE FALSE 2149.484713 2081.61532 1815.834373 2032.547703 1873.026335 2186.289353 2386.115345 3072.51649 1926.18817 2534.832487 0.847978998 0.821204293 0.716352809 0.801846952 0.738915232 0.862498554 0.941330584 1.21211816 0.759887756 1 11.3076747 -4.272886379 2.928761932 0.878214098 1.264402502 0.574924548 0.092091733 0.274175461 3.394827787 0.015547552 0.245200707 5.33E-05 4.272886379 0.386188404 EVYELLDS(ph)PGKVLLQSK ddPTM_HeLa_CUDC101_4h_R1 2 EVYELLDSPGKVLLQSK 17 1 E9PBS1;P22234;P22234-2 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 0 EVY(0.007)ELLDS(0.992)PGKVLLQS(0.001)K;EVYELLDS(1)PGKVLLQSK ; 106.03 0.00081175 175324000 5567 6048.2 6211.6 6518.7 7929.9 6428.4 5382.9 2985.7 7162.1 6352.4 TRUE FALSE FALSE 4914.444699 6234.537873 6547.417885 6784.560762 7344.927076 6305.78898 5590.520256 3325.580019 6866.875207 6314.615642 0.778265056 0.987318663 1.036867207 1.074421809 1.163162969 0.998602185 0.885330252 0.526648051 1.087457352 1 12.62447921 -4.27287876 3.523062905 0.94730577 0.481431385 0.588075096 0.112339688 0.191970885 4.182162893 0.018862592 0.232819924 5.33E-05 4.27287876 -0.465874385 LSDDFDS(ph)PVKGPLCK ddPTM_HeLa_CUDC101_4h_R1 2 LSDDFDSPVKGPLCK 15 1 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 LSDDFDS(1)PVKGPLCK;LS(0.419)DDFDS(0.581)PVKGPLCK ; 162.29 0.00024088 155412000 3694.5 3080.1 2261.01 2911.2 3014.1 2582.3 2174.7 1321.05 3275.5 1942.68 TRUE FALSE FALSE 3261.43631 3174.99423 2383.24704 3029.931319 2791.755848 2533.04693 2258.578907 1471.432992 3140.482504 1931.124853 1.688879052 1.644116498 1.234123747 1.568998149 1.445663052 1.31169506 1.169566486 0.761956427 1.62624519 1 10.91522573 -4.272745051 1.745029726 1.374980564 0.561919131 0.483814709 0.209499258 0.860668616 2.596860224 0.0400149 1.149559594 5.34E-05 4.272745051 -0.813061432 ESPFSTSAS(ph)PLLSGSQHFDVPPR ddPTM_HeLa_CUDC101_4h_R1 2 ESPFSTSASPLLSGSQHFDVPPR 23 0 O14980 O14980 XPO1 Exportin-1 1 0 ES(0.057)PFS(0.092)T(0.092)S(0.103)AS(0.623)PLLS(0.028)GS(0.005)QHFDVPPR;ES(0.002)PFS(0.008)T(0.171)S(0.147)AS(0.663)PLLS(0.004)GS(0.005)QHFDVPPR ; 69.765 0.0013526 11568200 1054.66 823.63 904.57 870.41 1286.79 917.16 1071.95 1457.75 1020.57 1241.24 TRUE FALSE FALSE 931.0343536 849.0050641 953.4737904 905.909082 1191.866065 899.6667011 1113.295471 1623.694368 978.5016726 1233.857049 0.754572302 0.688090297 0.772758717 0.734209107 0.965967708 0.729149865 0.90228886 1.315950149 0.793042981 1 10.26895954 -4.272492885 4.103959428 0.845810128 1.351016716 0.675080945 0.102903639 0.123792815 4.495484129 0.017568404 0.180901125 5.34E-05 4.272492885 0.505206588 EKT(ph)PELPEPSVK ddPTM_HeLa_CUDC101_4h_R1 4 EKTPELPEPSVK 12 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 EKT(1)PELPEPSVK;EKT(0.999)PELPEPS(0.001)VK;EKT(0.986)PELPEPS(0.014)VK;EKT(0.997)PELPEPS(0.003)VK ;;; 114.27 0.0054725 6537362000 26799.5 24775.6 25931.4 24560.7 27005.8 25106.6 24963.6 26648.5 28267.1 26769.5 TRUE FALSE FALSE 23658.10324 25538.90687 27333.32992 25562.39151 25013.63594 24627.73344 25926.45441 29682.05752 27101.91817 26610.27382 0.889058992 0.959738597 1.027172065 0.960621137 0.939999194 0.925497182 0.974302429 1.115436005 1.018475734 1 14.69969574 -4.272215976 3.727522716 0.952225764 1.130954976 0.520741896 0.041593177 0.156773523 4.102492224 0.006561738 0.075808221 5.34E-05 4.272215976 0.178729211 RQLAELETEDGMQES(ph)P ddPTM_HeLa_CUDC101_4h_R1 4 RQLAELETEDGMQESP 16 1 Q96QG7-2;Q96QG7 Q96QG7-2 MTMR9 Myotubularin-related protein 9 1 0 RQLAELETEDGMQES(1)P;RQLAELETEDGMQES(1)P;RQLAELETEDGMQES(1)P;RQLAELETEDGMQES(1)P ;;; 120.32 0.0011322 34991400 6905.4 6358 5997.5 5357.77 7226.4 6010.1 6067.23 6248.7 7272.9 6403 TRUE FALSE FALSE 6095.95948 6553.882444 6321.742991 5576.283019 6693.322869 5895.467356 6301.245093 6960.02675 6973.107984 6364.914671 0.957744101 1.029688972 0.993217241 0.876097058 1.051596638 0.926244523 0.98999679 1.093498831 1.09555404 1 12.63592546 -4.272080674 4.741451707 0.978333902 1.09924392 0.182953877 0.060040794 0.136651923 8.463762318 0.005983022 0.053478186 5.34E-05 4.272080674 0.120910017 AAAASAAEAGIAT(ph)TGTEGERDSDDALLK ddPTM_HeLa_CUDC101_4h_R1 1 AAAASAAEAGIATTGTEGERDSDDALLK 28 1 Q5VWC4 Q5VWC4 PSMD4 1 0 AAAAS(0.002)AAEAGIAT(0.294)T(0.294)GT(0.294)EGERDS(0.117)DDALLK 50.237 0.02987 7032200 1128.5 918.25 969.44 943.19 1143.6 938.96 999.85 1188.6 990.74 1022.5 TRUE FALSE FALSE 996.2189407 946.5401941 1021.850859 981.657365 1059.238906 921.0509024 1038.414549 1323.90542 949.9012779 1016.418125 0.980127092 0.931250802 1.00534498 0.965800728 1.042129101 0.906173237 1.021641118 1.302520476 0.934557595 1 9.989278291 -4.272063022 4.123349251 0.984042491 1.326101072 0.858871966 0.039822045 0.047380639 1.750051396 0.004580213 0.047079788 5.34E-05 4.272063022 0.342058581 SHTEEDCTEELFDFLHAR ddPTM_HeLa_CUDC101_4h_R1 4 SHTEEDCTEELFDFLHAR 18 0 P07919 P07919 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" 0 0 ;;; ;;; 285.04 4.16E-104 130054000 8018.1 7193.2 6019.5 7632.9 7588.8 7751 6845.5 6444.3 6095.2 2258.45 FALSE FALSE TRUE 7078.230473 7414.813966 6344.932378 7944.202654 7028.989343 7603.162589 7109.533228 7177.893063 5843.953276 2245.016639 3.152863257 3.302787978 2.826229556 3.538594109 3.130929732 3.386684293 3.166806475 3.197256064 2.603077935 1 11.13251042 -9.16306201 0.582966248 0.694141146 3.269804844 0.428066138 0.522752643 0.15614361 0.080335173 0.214868298 0.041337904 6.87E-10 9.16306201 2.575663698 SEYNIT(ph)IT(ph)VTDFGT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SEYNITITVTDFGTPR 16 0 Q9Y5E7 Q9Y5E7 PCDHB2 Protocadherin beta-2 3 0 S(0.222)EY(0.131)NIT(0.651)IT(0.967)VT(0.095)DFGT(0.935)PR 61.276 0.040082 21903000 2266.3 2057.3 2207.5 2046.2 1988.4 2070.7 2220.4 2834.6 1991.1 2417 TRUE FALSE FALSE 2000.647749 2120.682974 2326.844127 2129.65288 1841.719693 2031.204848 2306.041572 3157.279406 1909.026015 2402.623577 0.832692965 0.882653028 0.968459708 0.886386407 0.766545251 0.845411186 0.959801441 1.314096572 0.794558929 1 11.23039492 -4.271979023 3.631754991 0.902438939 1.355778305 0.759821954 0.072753805 0.112852279 2.71110821 0.011383151 0.136070567 5.35E-05 4.271979023 0.453339366 S(ph)SSLIQLTSQNSSPNQQR ddPTM_HeLa_CUDC101_4h_R1 1 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 0 S(0.865)S(0.067)S(0.067)LIQLTSQNSSPNQQR 317.83 7.35E-146 13941000 1499.2 1338.1 733.67 1056.9 973.56 1049.1 1294.4 2097.6 1230.6 1181 TRUE FALSE FALSE 1323.466049 1379.325275 773.3344194 1100.00495 901.7424184 1029.090165 1344.325442 2336.382305 1179.874147 1173.975359 1.127337161 1.17491842 0.658731389 0.936991515 0.768110175 0.87658583 1.14510533 1.990145948 1.005024626 1 10.19718641 -4.271923111 3.522898329 1.0013475 2.097492694 0.799697235 0.154459072 0.102604364 2.233938126 0.023591295 0.293207648 5.35E-05 4.271923111 1.096145193 DSSDS(ph)ADGRATPSENLVPSSAR ddPTM_HeLa_CUDC101_4h_R1 1 DSSDSADGRATPSENLVPSSAR 22 1 Q8N684-2;Q8N684;Q8N684-3;F5H669;F5H6M0;F5H047 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 0 DS(0.036)S(0.146)DS(0.616)ADGRAT(0.192)PS(0.009)ENLVPSSAR 58.712 0.0090197 309020000 2973 2990.1 2928 2899.9 3551.6 2886.4 3111.4 3813.1 3096.3 3590.4 TRUE FALSE FALSE 2624.509447 3082.221437 3086.296537 3018.170456 3289.605544 2831.346729 3231.40774 4247.167891 2968.669203 3569.044141 0.735353597 0.863598576 0.864740366 0.84565232 0.92170492 0.793306728 0.905398648 1.190001503 0.831782709 1 11.80132203 -4.271636068 4.08800135 0.867317002 1.214559907 0.683085297 0.067327184 0.139408357 4.997222361 0.013430407 0.139858674 5.35E-05 4.271636068 0.347242905 INSS(ph)PNVNTTASGVEDLNIIQVTIPDDDNER ddPTM_HeLa_CUDC101_4h_R1 1 INSSPNVNTTASGVEDLNIIQVTIPDDDNER 31 0 P78347-2;P78347-4;P78347-3;P78347;A0A494C1K3 P78347-2 GTF2I General transcription factor II-I 1 0 INS(0.218)S(0.744)PNVNT(0.02)T(0.017)AS(0.001)GVEDLNIIQVTIPDDDNER 100.98 1.23E-09 13060000 901.65 546.73 738.18 679.7 808.18 621.51 782.51 1055.1 902.73 846.85 TRUE FALSE FALSE 795.9599538 563.5741033 778.0882437 707.4211039 748.5621715 609.6557323 812.6916728 1175.208319 865.5190873 841.8128985 0.945530717 0.669476679 0.924300691 0.840354318 0.889226303 0.724217618 0.965406534 1.396044562 1.028160876 1 9.717355805 -4.2716062 4.679761294 0.917239167 1.42105254 0.643406812 0.112114623 0.092710853 5.464798198 0.016487417 0.149752442 5.35E-05 4.2716062 0.503813373 YADEEIPRS(ph)PFK ddPTM_HeLa_CUDC101_4h_R1 2 YADEEIPRSPFK 12 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 1 0 YADEEIPRS(1)PFK;YADEEIPRS(1)PFK ; 185.2 5.46E-10 345450000 4713.6 4413.5 4164 4175.3 4964.4 4514.7 3936.4 2711.2 4119.4 4168.8 TRUE FALSE FALSE 4161.078953 4549.474704 4389.118435 4345.586781 4598.186102 4428.58962 4088.228267 3019.832049 3949.596588 4144.003792 1.00412045 1.097845208 1.059149232 1.048644499 1.109599878 1.068674123 0.986540667 0.728723283 0.953087108 1 12.01680961 -4.271441688 3.644465932 1.027582713 0.698540532 0.798358849 0.04663129 0.093084889 2.261534464 0.006839288 0.081723266 5.35E-05 4.271441688 -0.32904218 LLHEDLDES(ph)DDDMDEKLQPSPNR ddPTM_HeLa_CUDC101_4h_R1 1 LLHEDLDESDDDMDEKLQPSPNR 23 1 O43150;O43150-2 O43150 ASAP2 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2" 1 0 LLHEDLDES(1)DDDMDEKLQPSPNR 91.547 9.68E-05 5355000 1302.5 1273.6 1081.7 1071.5 1468.9 1191.9 1289.3 1649 1168.7 1418.6 TRUE FALSE FALSE 1149.822924 1312.838106 1140.179974 1115.200401 1360.542173 1169.166493 1339.028733 1836.715495 1120.525691 1410.162104 0.815383509 0.930983823 0.808545323 0.790831351 0.964812605 0.829100775 0.9495566 1.302485359 0.794607718 1 10.4616453 -4.271380533 3.722870004 0.895201553 1.341676435 0.74262773 0.075198922 0.112273823 2.925652756 0.011653446 0.135692505 5.35E-05 4.271380533 0.446474882 SHVTEEEEEEEEEESDS ddPTM_HeLa_CUDC101_4h_R1 1 SHVTEEEEEEEEEESDS 17 0 O75971-2;O75971 O75971-2 SNAPC5 snRNA-activating protein complex subunit 5 0 0 99.522 0.018906 5457500 1066.7 879.56 998.29 1066.5 1215.6 759.4 1044.4 936.93 1228.5 1241 FALSE FALSE TRUE 941.663043 906.6582011 1052.260577 1109.99648 1125.92761 744.9157102 1084.682858 1043.586324 1177.86071 1233.618477 0.763334095 0.734958351 0.852987043 0.899789117 0.912703264 0.603846103 0.879269303 0.845955491 0.95480145 1 10.26868056 -9.338512507 1.026850665 1.001622709 0.809185025 0.355097268 0.088642206 0.442501169 0.824320055 0.062507991 0.01588467 4.59E-10 9.338512507 -0.192437684 TNATSPGVNSST(ph)SPQSTDK ddPTM_HeLa_CUDC101_4h_R1 1 TNATSPGVNSSTSPQSTDK 19 0 B7ZM87;O75044 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 1 0 TNATSPGVNS(0.013)S(0.006)T(0.928)S(0.051)PQSTDK 212.26 1.11E-23 20332000 2733.8 2343.5 1868.3 2018.3 2345 2027.9 1827.6 1502.2 2513.3 1972.6 TRUE FALSE FALSE 2413.348108 2415.700457 1969.305949 2100.614998 2172.014022 1989.221186 1898.091144 1673.204376 2409.70071 1960.866887 1.230755705 1.231955352 1.00430374 1.071268535 1.107680504 1.014460083 0.967985719 0.853298297 1.22889561 1 10.93727589 -4.271268951 0.807209399 1.1135298 0.704083356 0.545382513 0.082136437 1.85555076 0.873223586 0.016250445 0.677162461 5.35E-05 4.271268951 -0.409446445 RQDPQVVS(ph)PFSR ddPTM_HeLa_CUDC101_4h_R1 2 RQDPQVVSPFSR 12 1 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 0 RQDPQVVS(0.978)PFS(0.022)R;RQDPQVVS(0.613)PFS(0.387)R ; 120.21 0.0017828 30430000 2200.13 1726.85 1850.5 1688.51 1980.96 1892.2 1842.43 1882.93 2042.7 1888.26 TRUE FALSE FALSE 1942.234097 1780.052202 1950.543627 1757.374736 1834.828527 1856.109438 1913.493142 2097.27514 1958.499041 1877.028546 1.03473871 0.948335179 1.039165671 0.936253602 0.977517647 0.9888552 1.019426767 1.117337904 1.043403973 1 10.87423488 -4.271204426 3.587710281 1.003505672 1.129282553 0.507742021 0.035101246 0.175336663 4.047233167 0.004771624 0.058252175 5.36E-05 4.271204426 0.125776881 AEDGATPSPS(ph)NETPKKK ddPTM_HeLa_CUDC101_4h_R1 2 AEDGATPSPSNETPKKK 17 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGAT(0.001)PS(0.021)PS(0.553)NET(0.425)PKKK;AEDGAT(0.001)PS(0.09)PS(0.731)NET(0.178)PKKK ; 77.506 0.0065421 191492000 4893.6 4737 4844.8 4795.5 5885.7 4698.9 5621.8 8694.1 4304.6 6034.6 TRUE FALSE FALSE 4319.979626 4882.941355 5106.724543 4991.081218 5451.523637 4609.276311 5838.634709 9683.801201 4127.162566 5998.705931 0.720151925 0.813999121 0.851304365 0.83202632 0.908783278 0.768378441 0.973315708 1.614315039 0.688008816 1 12.55043559 -4.271194838 3.342896757 0.855259201 1.70734742 0.872573384 0.089726067 0.090990107 1.677379126 0.01462697 0.195582618 5.36E-05 4.271194838 0.852088219 RLS(ph)TPQR ddPTM_HeLa_CUDC101_4h_R1 1 RLSTPQR 7 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 RLS(0.807)T(0.193)PQR 64.654 0.038703 63617000 1797.8 1446.3 2107.9 2006.2 1626.7 1203.8 1148 450.01 1354.5 1335.5 TRUE FALSE FALSE 1587.064609 1490.858789 2221.85945 2088.021508 1506.701582 1180.839521 1192.278745 501.2373194 1298.666937 1327.556387 1.195478117 1.123009767 1.67364601 1.57283075 1.134943568 0.889483515 0.898100266 0.377563864 0.978238627 1 10.37455742 -4.270907373 1.231097817 1.174813742 0.051025626 0.561638256 0.228671949 0.988558112 1.250265086 0.037925803 1.403131043 5.36E-05 4.270907373 -1.123788116 AAQQAASSSGQGQQAQT(ph)PTGK ddPTM_HeLa_CUDC101_4h_R1 2 AAQQAASSSGQGQQAQTPTGK 21 0 H0Y9X2;U3KQK7;U3KPX3;A0A590UJ43;P48729;P48729-2 H0Y9X2 CSNK1A1 Casein kinase I isoform alpha 1 0 AAQQAASSSGQGQQAQT(1)PTGK;AAQQAASSSGQGQQAQT(1)PTGK ; 191.89 2.57E-13 10995200 3854.6 2787.21 3293.3 2819.4 3946.2 3001.71 2542.28 1455.94 3217.2 3151.4 TRUE FALSE FALSE 3402.769631 2873.080636 3471.34576 2934.387318 3655.096688 2944.457383 2640.336591 1621.678324 3084.585654 3132.655333 1.086225349 0.917139082 1.108116084 0.936709279 1.16677269 0.939923825 0.842842991 0.517668927 0.984655293 1 11.61317033 -4.270902417 1.49984997 1.036511715 0.320758966 0.805462704 0.07562672 0.310405743 0.636869021 0.009978174 0.326880918 5.36E-05 4.270902417 -0.715752749 SIDDLEEK ddPTM_HeLa_CUDC101_4h_R1 2 SIDDLEEK 8 0 P09493-3;P09493-9;Q6ZN40;P09493-8;P09493-7;P09493-2;H7BYY1 P09493-3 TPM1 Tropomyosin alpha-1 chain 0 0 ; ; 155.1 0.009624 47981000 6656.7 6388.9 6063.5 5554.4 6715.8 6561.9 6040.8 6699.7 6952.1 6190.5 FALSE FALSE TRUE 5876.411717 6585.734436 6391.311151 5780.93244 6220.388814 6436.74269 6273.79568 7462.366767 6665.531495 6153.678631 0.9549429 1.07021098 1.038616336 0.939427095 1.0108407 1.045999162 1.019519552 1.212667611 1.083178355 1 12.58723339 -1 0.957214983 0.989201995 164.0827446 0.535026082 0.049542913 505.1160921 0.815190854 0.006374277 180462.3358 0.1 1 163.0935426 SIDGTADDEDEGVPTDQAIR ddPTM_HeLa_CUDC101_4h_R1 2 SIDGTADDEDEGVPTDQAIR 20 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 0 0 ; ; 268.59 5.50E-86 9888400 1907.89 1516.57 1413.54 1685.9 1701.38 2004.96 1701.97 1508.35 1777.28 1682.2 FALSE FALSE TRUE 1684.250026 1563.293724 1489.960248 1754.658289 1575.872587 1966.718728 1767.615553 1680.054467 1704.019766 1672.1942 1.007209585 0.934875701 0.89102106 1.0493149 0.94239807 1.176130577 1.05706356 1.004700571 1.019032219 1 10.70752669 -5.285196202 24.93984515 0.989573335 1.077074804 0.369796871 0.05936081 644.9311043 677046.0068 0.008264117 0.018490256 5.19E-06 5.285196202 0.087501469 S(ph)EQKDPLEEPK ddPTM_HeLa_CUDC101_4h_R1 1 SEQKDPLEEPK 11 1 C9JPC9;Q9H9J4-2;Q9H9J4 C9JPC9 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 0 S(1)EQKDPLEEPK 68.168 0.036057 23461000 5132.6 4363 4575.7 4641.3 4558.1 4302 3642.6 2665 4526.2 4325.7 TRUE FALSE FALSE 4530.964409 4497.418859 4823.076183 4830.592275 4221.858044 4219.946518 3783.096302 2968.372828 4339.62812 4299.970544 1.053719871 1.045918527 1.121653307 1.123401248 0.981834178 0.981389634 0.879795865 0.690323991 1.009222755 1 12.07011106 -4.270794503 1.205407381 1.040227666 0.529989049 0.867710892 0.043776074 0.436670773 0.524830092 0.007400409 0.276755212 5.36E-05 4.270794503 -0.510238617 LAPVPS(ph)PEPQKPAPVSPESVK ddPTM_HeLa_CUDC101_4h_R1 2 LAPVPSPEPQKPAPVSPESVK 21 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 LAPVPS(1)PEPQKPAPVSPESVK;LAPVPS(1)PEPQKPAPVSPESVK ; 86.727 0.00053302 326650000 7247.7 5929.4 7396.4 6450.3 6507.6 5297 6284.6 7594.3 6046.3 6264.6 TRUE FALSE FALSE 6398.135593 6112.077786 7796.271757 6713.371115 6027.547313 5195.96855 6526.999127 8458.804415 5797.068955 6227.337881 1.027427083 0.981491273 1.25194295 1.078048316 0.967917179 0.834380381 1.048120281 1.358333943 0.930906443 1 12.60439984 -4.270663821 5.060549846 1.0175515 1.372498812 0.508686392 0.101988417 0.095873418 7.732047122 0.013619082 0.116823078 5.36E-05 4.270663821 0.354947312 SIEAVHEDIR ddPTM_HeLa_CUDC101_4h_R1 4 SIEAVHEDIR 10 0 P23919-2;P23919;H7C312;H7BZ20 P23919-2 DTYMK Thymidylate kinase 0 0 ;;; ;;; 141.91 0.00025972 32209800 28817.8 24082.9 24684.1 24857 26670.4 25257.5 24316.3 24675.2 25823.4 26109.8 FALSE FALSE TRUE 25439.82117 24824.8656 26018.59711 25870.7759 24702.97773 24775.75527 25254.18784 27484.12503 24758.94852 25954.49775 0.980170043 0.95647644 1.002469682 0.996774284 0.951780226 0.954584269 0.973017782 1.05893496 0.953936723 1 14.66369695 -9.155337048 1.004746161 0.999579329 0.982050075 0 0.033137606 1.456001231 2.735384498 0.017164901 0.00542518 6.99E-10 9.155337048 -0.017529254 LSAS(ph)PAQEK ddPTM_HeLa_CUDC101_4h_R1 1 LSASPAQEK 9 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 LS(0.227)AS(0.773)PAQEK 114.71 0.0078877 23915000 4446.5 3926.3 3489.3 3717.6 3917.2 4242.8 3671.2 2935.5 3976 3826.7 TRUE FALSE FALSE 3925.28801 4047.264649 3677.942113 3869.219797 3628.23596 4161.875659 3812.799414 3269.665454 3812.107597 3803.938618 1.031900986 1.063966866 0.966877356 1.01716147 0.953810333 1.094096429 1.002329374 0.859547375 1.002147505 1 11.89327825 -4.270417838 4.993835238 1.016399662 0.852720032 0.585723901 0.039266959 0.078454334 5.998258471 0.005018937 0.043607993 5.37E-05 4.270417838 -0.163679631 SIEGTADDEEEGVSPDTAIR ddPTM_HeLa_CUDC101_4h_R1 2 SIEGTADDEEEGVSPDTAIR 20 0 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 0 0 ; ; 265.99 7.72E-71 11829800 1408.41 968.01 1269.24 1307.2 1270.24 1071.6 1437.86 1500.69 1109.72 1206.1 FALSE FALSE TRUE 1243.318315 997.8332407 1337.858954 1360.513266 1176.536926 1051.161015 1493.318742 1671.522484 1063.976872 1198.926064 1.03702668 0.83227254 1.115881116 1.13477662 0.981325673 0.87675216 1.245546983 1.394183123 0.887441606 1 10.22752698 -4.580020338 5.085323418 1.010251842 1.362675793 0.66142362 0.097271216 0.072417223 3.779319096 0.01204683 0.049614346 2.63E-05 4.580020338 0.352423951 VNGDASPAAAES(ph)GAK ddPTM_HeLa_CUDC101_4h_R1 1 VNGDASPAAAESGAK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 VNGDAS(0.359)PAAAES(0.641)GAK 85.469 0.015144 9260000 2247.2 1820.4 1912.6 1988.7 1551.7 1578.9 1304 937.38 1883.3 2176.8 TRUE FALSE FALSE 1983.786623 1876.484366 2016.000941 2069.807782 1437.234182 1548.785113 1354.295717 1044.08755 1805.669577 2163.852297 0.916784674 0.867196143 0.931672159 0.956538385 0.664201611 0.715753619 0.625872532 0.482513317 0.834469885 1 11.07938631 -3.965012276 0.38304654 0.977267692 6.29E-18 0.792999243 0.073056638 1.610948561 0.13724297 0.016838677 0.756178274 0.00010839 3.965012276 -0.977267692 down YASGSSAS(ph)LGGPESAVA ddPTM_HeLa_CUDC101_4h_R1 2 YASGSSASLGGPESAVA 17 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 YAS(0.118)GS(0.029)S(0.118)AS(0.734)LGGPESAVA;YAS(0.122)GS(0.036)S(0.154)AS(0.688)LGGPESAVA ; 80.746 0.011729 13299600 2674.4 2413.4 1834.25 1878.15 2539.4 2192 2491.9 3521.4 2350 2296.7 TRUE FALSE FALSE 2360.910886 2487.753993 1933.415103 1954.749075 2352.073521 2150.191252 2588.013418 3922.261942 2253.132005 2283.039126 1.034108815 1.0896677 0.846860258 0.856204807 1.030237938 0.941810952 1.133582595 1.718000317 0.986900303 1 11.15673987 -4.270342236 2.881078528 0.995428214 1.837215899 0.896862295 0.07535405 0.092974521 1.092992411 0.010986527 0.179933757 5.37E-05 4.270342236 0.841787686 TVSTSS(ph)QPEENVDR ddPTM_HeLa_CUDC101_4h_R1 1 TVSTSSQPEENVDR 14 0 P42684-2;P42684-6;P42684-3;P42684;P42684-4;P42684-7;P42684-10;P42684-5 P42684-2 ABL2 Abelson tyrosine-protein kinase 2 1 0 TVST(0.003)S(0.031)S(0.965)QPEENVDR 159.18 5.44E-05 14519000 1724.1 1222.2 1375 1258.2 1262.3 1132.5 1447.4 2425.2 1381 1243 TRUE FALSE FALSE 1522.003612 1259.854533 1449.336659 1309.514834 1169.182644 1110.899449 1503.226703 2701.274965 1324.074595 1235.606581 1.231786586 1.019624331 1.172975834 1.059815361 0.94624184 0.899072137 1.216590075 2.186193411 1.071598854 1 10.27100374 -4.27019642 3.896322069 1.082466483 2.282545358 0.922909094 0.097549422 0.054341473 1.65038706 0.016402087 0.182526776 5.37E-05 4.27019642 1.200078875 up SHISDQS(ph)PLSSK ddPTM_HeLa_CUDC101_4h_R1 2 SHISDQSPLSSK 12 0 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 SHIS(0.006)DQS(0.994)PLSSK;SHISDQS(1)PLSSK ; 198.29 2.95E-22 27759000 6106.7 4059 4680.3 3688.9 7182.5 5285.9 4244.9 1783.5 6191.8 6098.2 TRUE FALSE FALSE 5390.881883 4184.052979 4933.331175 3839.349287 6652.661285 5185.080264 4408.627215 1986.526431 5936.571383 6061.927635 0.88930159 0.690218233 0.813822182 0.633354523 1.097449802 0.855351726 0.727264903 0.327705402 0.979320728 1 12.56556091 -4.270067211 1.921240837 0.90264928 0.156725245 0.590030386 0.134310878 0.407954241 1.571419408 0.020203682 0.536253905 5.37E-05 4.270067211 -0.745924035 S(ph)PQISMSDIDLNLK ddPTM_HeLa_CUDC101_4h_R1 1 SPQISMSDIDLNLK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(1)PQISMSDIDLNLK 105.58 0.0047084 9223000 1407.3 917.59 1147 924.64 1115.6 1249.8 1026 508.75 1030.5 1187.1 TRUE FALSE FALSE 1242.338427 945.8598603 1209.010289 962.3508158 1033.304411 1225.962147 1065.573164 566.6640436 988.0223538 1180.039076 1.052794312 0.801549609 1.024551062 0.815524532 0.875652706 1.038916568 0.902998201 0.480207863 0.837279353 1 10.20461892 -4.270047747 3.22767267 0.984551601 0.413037554 0.599143786 0.102645268 0.136194319 2.249574925 0.013625487 0.192305568 5.37E-05 4.270047747 -0.571514047 NS(ph)LT(ph)KT(ph)QWK ddPTM_HeLa_CUDC101_4h_R1 1 NSLTKTQWK 9 1 E9PAL5;A8TX70-2;A8TX70 E9PAL5 COL6A5 Collagen alpha-5(VI) chain 3 0 NS(1)LT(1)KT(1)QWK 87.216 0.0019423 0 1137.7 1164 1044.6 1081.3 1292.7 936.06 1088.3 1340.2 973.99 1172.9 TRUE FALSE FALSE 1004.340531 1199.86146 1101.074236 1125.400088 1197.340096 918.2062151 1130.276096 1492.762951 933.8417199 1165.923539 0.861412003 1.029108188 0.944379455 0.965243475 1.026945642 0.787535533 0.969425574 1.280326626 0.800945936 1 10.18725746 -4.269714413 4.963849268 0.939745076 1.295593541 0.614912919 0.082829929 0.07541877 5.637454859 0.010332369 0.090825239 5.37E-05 4.269714413 0.355848465 GIMES(ph)PIVR ddPTM_HeLa_CUDC101_4h_R1 1 GIMESPIVR 9 0 E5RFN8;B4DZ84;D3DX49;A0A0D9SFF8;A0A0A0MRU0;D3DX48;A0A087X0C7;A0A0C4DH75;A0A087WVY2;E5RIU3;E5RI32;E5RK44;E5RJK0;E5RK50;Q14168-2;Q14168-3;Q14168;Q14168-4;Q14168-6 E5RFN8 MPP2 MAGUK p55 subfamily member 2 1 0 GIMES(1)PIVR 93.556 0.023783 3375800 2433.6 2292.2 2266.9 1899.7 2441.3 2147 2135.3 2247.6 2090.6 2195.9 TRUE FALSE FALSE 2148.337097 2362.819965 2389.455471 1977.177977 2261.210163 2106.049552 2217.659236 2503.457699 2004.424583 2182.838689 0.984194163 1.082452852 1.094655085 0.905782909 1.035903466 0.964821433 1.015951956 1.146881678 0.918265098 1 11.0919898 -4.26950896 4.365300406 1.001200944 1.156427719 0.363980902 0.05844338 0.145097789 6.599830017 0.006939235 0.068635796 5.38E-05 4.26950896 0.155226775 S(ph)HNNFVAILDLPEGEHQYK ddPTM_HeLa_CUDC101_4h_R1 1 SHNNFVAILDLPEGEHQYK 19 0 Q9Y478 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 0 S(1)HNNFVAILDLPEGEHQYK 89.877 0.0029516 6921600 2526.1 1956.9 2061.7 2080.3 1607.8 1769.2 2398.8 4330.2 2062.7 2449 TRUE FALSE FALSE 2229.994387 2017.18977 2173.161738 2165.143626 1489.195797 1735.455458 2491.32252 4823.132465 1977.674633 2434.433239 0.916021993 0.828607553 0.892676662 0.889383036 0.611721765 0.71287864 1.023368593 1.981213692 0.812375793 1 11.24937022 -4.269459417 4.033074099 0.901066093 2.068438829 0.88803612 0.119755996 0.06080454 2.080880414 0.018943018 0.203876216 5.38E-05 4.269459417 1.167372736 SILYDER ddPTM_HeLa_CUDC101_4h_R1 1 SILYDER 7 0 P25787;A0A024RA52 P25787 PSMA2 Proteasome subunit alpha type-2;Proteasome subunit alpha type 0 0 120.49 0.0010762 0 2987.6 2693.1 2404.5 2554.1 2827.6 2612.2 2450.3 2589.4 2516.2 2383.9 FALSE FALSE TRUE 2637.398057 2776.071219 2534.494543 2658.267238 2619.013581 2562.376637 2544.808892 2884.166829 2412.481171 2369.720457 1.112957458 1.171476244 1.069533132 1.121764059 1.105199381 1.081299117 1.073885692 1.217091586 1.018044624 1 11.21050117 -9.054567839 0.737708204 0.995757213 1.116349523 0.500143258 0.043629652 0.460818584 0.437130289 0.032442124 0.008690723 8.82E-10 9.054567839 0.12059231 QES(ph)DPEDDDVKKPALQSSVVATSK ddPTM_HeLa_CUDC101_4h_R1 3 QESDPEDDDVKKPALQSSVVATSK 24 2 Q9H307 Q9H307 PNN Pinin 1 0 QES(0.989)DPEDDDVKKPALQS(0.008)S(0.003)VVATSK;QES(0.86)DPEDDDVKKPALQS(0.063)S(0.063)VVAT(0.007)S(0.008)K;QES(0.996)DPEDDDVKKPALQS(0.002)S(0.002)VVATSK ;; 69.398 0.00069212 1505426000 9849.7 8709.2 9046.1 8776.9 8541.7 8409 8667.4 9450.2 9751.2 9142.2 TRUE FALSE FALSE 8695.133097 8977.520129 9535.159529 9134.859919 7911.595808 8248.612335 9001.704521 10525.97257 9349.251409 9087.821788 0.95678957 0.987862696 1.049223868 1.005175952 0.870571188 0.9076556 0.990523883 1.158250328 1.028767028 1 13.14971883 -4.269360299 4.804352402 0.974182567 1.167417941 0.532885309 0.050916431 0.100396544 6.589284481 0.007051733 0.063901831 5.38E-05 4.269360299 0.193235374 NSNSGNSALNNATPNT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 NSNSGNSALNNATPNTPR 18 0 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 0 NSNSGNSALNNAT(0.001)PNT(0.999)PR 166.21 3.49E-05 7077500 1605.5 993.57 1275.9 1228.5 1410.3 1130.4 944.99 598.5 1422.8 1349.5 TRUE FALSE FALSE 1417.305724 1024.180714 1344.879013 1278.60354 1306.264979 1108.839503 981.4385808 666.6308208 1364.151582 1341.473114 1.056529355 0.763474648 1.002538925 0.953133929 0.973754125 0.826583471 0.731612561 0.496939382 1.016905645 1 10.38960242 -3.964177336 0.668546886 1.007395805 1.04E-17 0.777433384 0.078744506 1.365447061 0.322774511 0.013932838 1.142879011 0.000108598 3.964177336 -1.007395805 down GLDEEATPGT(ph)PGDPARPPASK ddPTM_HeLa_CUDC101_4h_R1 1 GLDEEATPGTPGDPARPPASK 21 1 Q7Z7A3 Q7Z7A3 CTU1 Cytoplasmic tRNA 2-thiolation protein 1 1 0 GLDEEAT(0.003)PGT(0.869)PGDPARPPAS(0.127)K 71.002 0.00095426 0 2425.2 1607.9 1982.4 1565 1781.7 1694.3 1454.6 747.04 1912.1 1905.3 TRUE FALSE FALSE 2140.921732 1657.437493 2089.57454 1628.827465 1650.267541 1661.98405 1510.704409 832.080014 1833.282429 1893.967191 1.130390084 0.875114153 1.103279165 0.860008279 0.871328473 0.8775147 0.797640221 0.439331799 0.967958916 1 10.88719562 -3.961977359 0.538861965 1.05099164 6.50E-15 0.740385657 0.093210777 1.757235762 0.274867211 0.018164924 1.242459587 0.00010915 3.961977359 -1.05099164 down SSGGREDLESS(ph)GLQR ddPTM_HeLa_CUDC101_4h_R1 3 SSGGREDLESSGLQR 15 1 Q9UK76-3;Q9UK76;J3KSH8;J3KT51;Q9UK76-2 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 SSGGREDLES(0.249)S(0.751)GLQR;SSGGREDLES(0.024)S(0.976)GLQR;SSGGREDLES(0.002)S(0.998)GLQR ;; 219.53 1.08E-31 180973000 6810 4898.76 5958.51 5119.57 5825.38 5673.53 6104.59 7876.19 5175.27 5610.49 TRUE FALSE FALSE 6011.742123 5049.684989 6280.645074 5328.368193 5395.653323 5565.316868 6340.046081 8772.783633 4961.94318 5577.118556 1.07792977 0.90542902 1.126145161 0.95539805 0.967462547 0.997883909 1.136796003 1.572995723 0.889696558 1 12.44530422 -4.269203109 2.681013613 1.021922668 1.676715424 0.847444887 0.073438864 0.106014203 1.010396242 0.008426503 0.152707266 5.38E-05 4.269203109 0.654792756 SIPLDEGEDEAQR ddPTM_HeLa_CUDC101_4h_R1 2 SIPLDEGEDEAQR 13 0 Q14204;A0A2R8YFZ7;A0A2R8YGC7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 179.19 4.12E-07 18493000 2446.62 1995.1 2465.1 2381.9 2454 2162.51 2333.9 2183.2 2417 2636.5 FALSE FALSE TRUE 2159.830912 2056.566666 2598.370763 2479.044177 2272.973309 2121.263725 2423.919305 2431.726663 2317.370237 2620.817981 0.824105653 0.78470412 0.991435033 0.94590475 0.867276295 0.809389946 0.924871289 0.927850267 0.884216399 1 11.35580144 -9.493778608 1.265609042 0.999383146 0.878375103 0 0.071147965 0.435522103 1.258433773 0.044808846 0.011138735 3.21E-10 9.493778608 -0.121008043 SLVGS(ph)WLK ddPTM_HeLa_CUDC101_4h_R1 1 SLVGSWLK 8 0 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 0 SLVGS(1)WLK 111.06 0.011115 13620000 1479 1322.7 1290.8 1184.2 1715.3 1810.8 2337.1 3455.5 1716.7 2027.9 TRUE FALSE FALSE 1305.633862 1363.450819 1360.584552 1232.496795 1588.765736 1776.262007 2427.24273 3848.860152 1645.936899 2015.837961 0.647687903 0.676369255 0.674947381 0.61140668 0.78814159 0.881153169 1.20408623 1.909310286 0.816502582 1 10.97716396 -4.268983694 1.597509166 0.786183726 2.320876233 0.911681583 0.110568019 0.308233251 0.738265483 0.023211226 0.73047474 5.38E-05 4.268983694 1.534692507 SMGTGDTPGLEVPS(ph)SPLRK ddPTM_HeLa_CUDC101_4h_R1 5 SMGTGDTPGLEVPSSPLRK 19 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SMGTGDTPGLEVPS(0.5)S(0.5)PLRK;SMGTGDTPGLEVPS(0.5)S(0.5)PLRK;SMGTGDTPGLEVPS(0.579)S(0.421)PLRK;SMGTGDT(0.001)PGLEVPS(0.5)S(0.5)PLRK;SMGTGDTPGLEVPS(0.5)S(0.5)PLRK ;;;; 149.31 2.75E-05 573370000 19349.85 18181.73 17249.76 16907.48 20388.52 18052.46 18081.36 20048.1 21096.88 19177.05 TRUE FALSE FALSE 17081.68992 18741.88755 18182.3342 17597.04011 18884.4995 17708.1394 18778.76411 22330.29467 20227.25768 19062.98405 0.896065898 0.983156021 0.953803148 0.923099976 0.990637114 0.928927987 0.98509048 1.171395549 1.061075098 1 14.21848635 -4.268877486 3.344616228 0.95213052 1.198809644 0.624894635 0.046020881 0.120951325 2.228443666 0.00556106 0.075533895 5.38E-05 4.268877486 0.246679124 SES(ph)VEGFLS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 SESVEGFLSPSR 12 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 2 0 S(0.001)ES(0.999)VEGFLS(0.623)PS(0.377)R 149.57 0.0064107 3986700 3326.2 3232.9 2956.6 2981.7 3537.8 3532.6 2986.2 2307.7 3580.4 3249.4 TRUE FALSE FALSE 2936.307878 3332.501817 3116.442739 3103.306614 3276.823542 3465.221541 3101.378734 2570.39924 3432.814397 3230.072424 0.909053263 1.031711175 0.96482132 0.960754499 1.014473706 1.072799952 0.960157646 0.795771395 1.062767005 1 11.6573508 -4.268833082 5.305403954 0.973987585 0.789239545 0.533538703 0.052733879 0.092687392 9.160133664 0.007301601 0.061616884 5.38E-05 4.268833082 -0.18474804 TSAQTT(ph)PSKIPR ddPTM_HeLa_CUDC101_4h_R1 1 TSAQTTPSKIPR 12 1 O95684 O95684 FGFR1OP FGFR1 oncogene partner 1 0 TSAQT(0.245)T(0.753)PS(0.002)KIPR 91.812 0.022374 63857000 4358.3 3541.9 3525.6 3554.2 4538.7 4015.1 3992.1 4346.1 4023.5 4435.8 TRUE FALSE FALSE 3847.426681 3651.021741 3716.2046 3699.155639 4203.889143 3938.518657 4146.076634 4840.842456 3857.649627 4409.415664 0.872547969 0.828005799 0.842788452 0.838921962 0.953389171 0.893206483 0.940278021 1.097842169 0.874866404 1 12.10637177 -4.268805454 3.517995923 0.914938825 1.118378726 0.52224919 0.055820388 0.237386492 5.13545611 0.009920548 0.126373716 5.39E-05 4.268805454 0.203439901 SLSES(ph)SVIMDR ddPTM_HeLa_CUDC101_4h_R1 1 SLSESSVIMDR 11 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 SLS(0.021)ES(0.49)S(0.49)VIMDR 124.39 0.0065668 18758000 5006.3 4852 4259.5 4179.6 6123.3 4793 4197.5 2922.7 4781.2 4215.7 TRUE FALSE FALSE 4419.469103 5001.484369 4489.781454 4350.062154 5671.596358 4701.581511 4359.398981 3255.408354 4584.116912 4190.624829 1.054608628 1.193493709 1.071387117 1.038046194 1.353401125 1.12192852 1.040274221 0.776831257 1.093898189 1 12.03294965 -4.268732039 4.168696692 1.071254285 0.754817596 0.456524104 0.10205303 0.173311399 6.669872389 0.015471703 0.161599989 5.39E-05 4.268732039 -0.316436688 SIQEIQELDKDDESLR ddPTM_HeLa_CUDC101_4h_R1 2 SIQEIQELDKDDESLR 16 1 J3KTF8;J3QQX2;P52565;J3KRE2;J3KRY1;P52565-2;J3KS60 J3KTF8 ARHGDIA Rho GDP-dissociation inhibitor 1 0 0 ; ; 210.08 1.93E-23 224570000 5606.7 4894 4945.9 4670.5 5432 4953.5 5072 5271.7 5933.1 5653.7 FALSE FALSE TRUE 4949.491125 5044.778339 5213.290315 4860.983178 5031.292182 4859.020241 5267.628739 5871.809019 5688.535107 5620.071541 0.88068116 0.897635965 0.92761992 0.864932616 0.895236323 0.864583343 0.937288556 1.044792575 1.012181974 1 12.45637278 -9.393832562 1.090800512 1.000576244 0.908505587 0.342218221 0.050014869 0.498894878 1.051289814 0.035326987 0.008801778 4.04E-10 9.393832562 -0.092070658 SIQFVDWCPTGFK ddPTM_HeLa_CUDC101_4h_R1 2 SIQFVDWCPTGFK 13 0 P68363;P68363-2;P68366-2;P68366 P68363;P68366-2 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain 0 0 ; ; 136.7 0.004812 21045000 4039.1 3751.6 3346.7 3860.5 3564.3 3489.6 3340.8 3074.5 3596.2 2016.15 FALSE FALSE TRUE 3565.642821 3867.182349 3527.632725 4017.947877 3301.36869 3423.041694 3469.655775 3424.488652 3447.963114 2004.15785 1.779122748 1.929579723 1.760157128 2.004806097 1.647259815 1.707970105 1.731228793 1.708692083 1.720404964 1 10.96878043 -9.069035244 0.749870207 0.973566726 1.788875644 0.101151785 0.241674514 0.182425173 0.178738378 0.087762882 0.023450492 8.53E-10 9.069035244 0.815308918 VNHEPEPAGGATPGATLPKS(ph)PSQLR ddPTM_HeLa_CUDC101_4h_R1 2 VNHEPEPAGGATPGATLPKSPSQLR 25 1 O00499-6;O00499-11;O00499-2;O00499 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 VNHEPEPAGGATPGAT(0.002)LPKS(0.769)PS(0.228)QLR;VNHEPEPAGGATPGAT(0.138)LPKS(0.627)PS(0.236)QLR ; 141.72 6.95E-11 227090000 6041.4 5887.5 6333.6 5983.5 7011.3 5860.1 6262.1 8141.6 6466.6 6648.9 TRUE FALSE FALSE 5333.23625 6068.886897 6676.013574 6227.532993 6494.090367 5748.328356 6503.631295 9068.406835 6200.044011 6609.352047 0.806922708 0.918227211 1.01008594 0.942230486 0.98256082 0.86972646 0.98400437 1.372056863 0.938071382 1 12.69029313 -4.268673241 3.47752514 0.920448893 1.424119791 0.830245641 0.058860969 0.108995142 2.271655958 0.01102007 0.142591124 5.39E-05 4.268673241 0.503670898 S(ph)PQPDPVGT(ph)PTIFKPQSK ddPTM_HeLa_CUDC101_4h_R1 2 SPQPDPVGTPTIFKPQSK 18 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 2 0 S(1)PQPDPVGT(0.928)PT(0.071)IFKPQS(0.002)K;S(0.999)PQPDPVGT(0.574)PT(0.427)IFKPQS(0.001)K ; 68.406 0.030233 14996500 6732.7 5890.7 5807.4 6306 5697.3 6027.1 4976.2 2364.6 6206.4 4916.5 TRUE FALSE FALSE 5943.503112 6072.185485 6121.36561 6563.185937 5277.02153 5912.143109 5168.133701 2633.776506 5950.569565 4887.256439 1.216122621 1.242452808 1.252515739 1.342918265 1.079751307 1.209705933 1.057471357 0.538906959 1.217568515 1 12.25480909 -4.268656953 3.395417743 1.146209832 0.465213459 0.786928062 0.099695534 0.131679994 2.543492293 0.017187552 0.229316716 5.39E-05 4.268656953 -0.680996373 QVAAS(ph)PAVGQPLQK ddPTM_HeLa_CUDC101_4h_R1 1 QVAASPAVGQPLQK 14 0 A0A2R8YD63;Q92547 A0A2R8YD63 TOPBP1 DNA topoisomerase 2-binding protein 1 1 0 QVAAS(1)PAVGQPLQK 108.14 0.0040263 8108900 2479.1 2202.3 2291.4 1590.2 2152.9 1986 1583.9 902.66 1946.4 2250.8 TRUE FALSE FALSE 2188.503656 2270.150253 2415.280015 1655.055229 1994.084856 1948.120359 1644.991554 1005.415166 1866.168568 2237.412141 0.978140601 1.014632133 1.079497143 0.739718534 0.891246105 0.870702506 0.735220625 0.449365205 0.834074569 1 11.12761532 -3.960989851 0.626043983 0.990834091 3.18E-18 0.7091761 0.094345382 1.406648439 0.292127246 0.013863605 1.086831176 0.000109398 3.960989851 -0.990834091 down EEIQETQT(ph)PTHSR ddPTM_HeLa_CUDC101_4h_R1 2 EEIQETQTPTHSR 13 0 H7BZL0;Q9BYG3 H7BZL0 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 0 EEIQET(0.015)QT(0.98)PT(0.005)HSR;EEIQET(0.001)QT(0.999)PTHSR ; 138.31 0.0013578 20702000 5008.9 6648.9 6276.6 7077 7344.3 7183.5 5638.6 2416.65 7230.7 7130.2 TRUE FALSE FALSE 4421.764335 6853.744728 6615.931982 7365.630649 6802.525621 7046.486706 5856.082691 2691.751668 6932.647486 7087.789253 0.623856632 0.966979192 0.933426735 1.039200008 0.959752806 0.994172718 0.826221334 0.379773096 0.978111402 1 12.79111999 -4.268587457 4.478249201 0.872708597 0.349333671 0.61694084 0.123309847 0.13677814 6.849793671 0.022921831 0.222956526 5.39E-05 4.268587457 -0.523374926 ISMQDVDLS(ph)LGSPK ddPTM_HeLa_CUDC101_4h_R1 1 ISMQDVDLSLGSPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ISMQDVDLS(0.991)LGS(0.009)PK 222.75 1.97E-32 32866000 3827.1 3728.4 3368.8 3972.2 4007.1 3874.6 3406.6 2411.5 3534.1 4007.4 TRUE FALSE FALSE 3378.49314 3843.267585 3550.927518 4134.203485 3711.504216 3800.698461 3537.993703 2686.015412 3388.422902 3983.563807 0.848108202 0.964781229 0.891394663 1.037815305 0.931704473 0.954095038 0.888147868 0.67427448 0.850600886 1 11.95984397 -4.26849626 2.925911109 0.936172124 0.631677355 0.648984391 0.057213053 0.20301756 2.490322707 0.008858459 0.143821921 5.39E-05 4.26849626 -0.30449477 GFGS(ph)EEGSR ddPTM_HeLa_CUDC101_4h_R1 4 GFGSEEGSR 9 0 Q9Y5S9 Q9Y5S9 RBM8A RNA-binding protein 8A 1 0 GFGS(0.995)EEGS(0.005)R;GFGS(0.982)EEGS(0.018)R;GFGS(0.703)EEGS(0.297)R;GFGS(0.604)EEGS(0.396)R ;;; 112.85 0.0088126 478661000 11758.7 10031.9 10740.4 10308.7 10522.8 10729.2 10258.6 10198.3 10507.3 10383.4 TRUE FALSE FALSE 10380.36301 10340.97095 11321.05851 10729.13334 9746.554008 10524.55839 10654.27764 11359.23325 10074.18465 10321.63908 1.0056894 1.001872946 1.09682759 1.039479608 0.944283552 1.019659602 1.0322273 1.100526105 0.976025665 1 13.33338447 -4.26843381 2.175127967 1.008839427 1.123858695 0.34131556 0.037622065 0.548121876 2.924979982 0.005163243 0.121125728 5.39E-05 4.26843381 0.115019267 AAS(ph)PESASSTPESLQAR ddPTM_HeLa_CUDC101_4h_R1 3 AASPESASSTPESLQAR 17 0 Q96BT3 Q96BT3 CENPT Centromere protein T 1 0 AAS(0.997)PES(0.003)ASSTPESLQAR;AAS(1)PESASSTPESLQAR;AAS(0.998)PES(0.002)ASSTPESLQAR ;; 318.62 7.98E-167 67861000 4437.88 3986.13 4194.36 3903.37 4472.6 4096.27 4099.3 4337.37 4222.46 4548.86 TRUE FALSE FALSE 3917.678434 4108.937941 4421.119789 4062.5663 4142.665209 4018.140475 4257.411374 4831.118669 4048.408412 4521.803178 0.866397382 0.908694558 0.977733797 0.898439437 0.916153367 0.888614634 0.941529564 1.068405341 0.895308409 1 12.14268248 -4.268417979 4.683459289 0.929306316 1.075977362 0.548110668 0.039595989 0.143955646 8.561265414 0.007296985 0.068215518 5.39E-05 4.268417979 0.146671045 TLFLGIPDENFEDHSAPPS(ph)PEEK ddPTM_HeLa_CUDC101_4h_R1 2 TLFLGIPDENFEDHSAPPSPEEK 23 0 Q99683-2;Q99683 Q99683-2 MAP3K5 Mitogen-activated protein kinase kinase kinase 5 1 0 TLFLGIPDENFEDHS(0.005)APPS(0.995)PEEK;TLFLGIPDENFEDHS(0.001)APPS(0.999)PEEK ; 99.34 5.77E-05 16927800 7550.4 6439.8 5455.1 6001.5 7268.3 7200.1 6113.6 3801.3 6223.7 6665.4 TRUE FALSE FALSE 6665.353558 6638.202605 5750.019207 6246.267111 6732.131989 7062.770089 6349.4036 4234.024627 5967.156452 6625.753904 1.005976626 1.001878835 0.867828671 0.942725492 1.016055242 1.065957201 0.958291493 0.639025338 0.900600375 1 12.6938689 -4.268410316 4.288138331 0.993753663 0.614302284 0.746850468 0.057613344 0.063077112 2.689352662 0.007088533 0.072089087 5.39E-05 4.268410316 -0.379451379 VTTEIQLPSQS(ph)PVEEQSPASLSSLR ddPTM_HeLa_CUDC101_4h_R1 3 VTTEIQLPSQSPVEEQSPASLSSLR 25 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 E9PMS6 LMO7 LIM domain only protein 7 1 0 VTTEIQLPSQS(0.999)PVEEQSPASLSSLR;VTTEIQLPS(0.007)QS(0.993)PVEEQSPASLSSLR;VTTEIQLPS(0.214)QS(0.784)PVEEQS(0.002)PASLSSLR ;; 156.49 3.76E-11 87568000 8714.9 8638.8 7633.4 7115.5 8754.8 7900.8 8172.5 9948.9 8549.5 8501.6 TRUE FALSE FALSE 7693.352633 8904.951189 8046.084694 7405.700846 8108.975846 7750.105404 8487.716063 11081.44256 8197.085991 8451.032105 0.910344741 1.053711674 0.952083082 0.876307267 0.959524913 0.917060225 1.004340767 1.311253161 0.969950876 1 13.04491183 -4.268403149 3.51535567 0.95543182 1.351408834 0.838450354 0.046636312 0.08633731 1.862684698 0.006995758 0.089468768 5.39E-05 4.268403149 0.395977014 GGGQLDLLGVSLAS(ph)LKK ddPTM_HeLa_CUDC101_4h_R1 2 GGGQLDLLGVSLASLKK 17 1 F8WCC1;E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2;H0Y7D3 F8WCC1 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 0 GGGQLDLLGVSLAS(1)LKK;GGGQLDLLGVSLAS(1)LKK ; 121.48 0.00016199 19438800 9563 7173.5 7924.7 8189.9 8953.4 8607.4 7314.6 4113.2 6059.4 7672.3 TRUE FALSE FALSE 8442.039637 7394.507032 8353.133253 8523.919522 8292.92552 8443.228186 7596.726572 4581.430062 5809.628967 7626.664818 1.10691106 0.969559723 1.095253751 1.117647061 1.087359379 1.107066901 0.99607453 0.600712129 0.761752235 1 12.89683658 -4.268374161 3.505056633 1.05934044 0.548614065 0.588497123 0.105032867 0.072627019 1.552119201 0.007546212 0.096887176 5.39E-05 4.268374161 -0.510726375 RQDSDLVQCGVTS(ph)PSSAEATGK ddPTM_HeLa_CUDC101_4h_R1 1 RQDSDLVQCGVTSPSSAEATGK 22 1 Q9HC52 Q9HC52 CBX8 Chromobox protein homolog 8 1 0 RQDSDLVQCGVT(0.161)S(0.737)PS(0.086)S(0.015)AEATGK 114.68 4.27E-06 24237000 1610.2 1315.4 1287.3 1330.1 1754.6 1379.4 1174.3 639.47 1237.2 1052.6 TRUE FALSE FALSE 1421.454797 1355.925915 1356.895332 1384.347227 1625.166654 1353.090243 1219.593144 712.26468 1186.202092 1046.339088 1.358503006 1.295876193 1.296802678 1.323038815 1.553193101 1.293166105 1.165581175 0.680720703 1.133668909 1 10.03113475 -4.268313036 3.686109759 1.235806687 0.624390691 0.604609685 0.141511518 0.18842226 4.746434861 0.025793618 0.31126163 5.39E-05 4.268313036 -0.611415996 SISLYYTGEK ddPTM_HeLa_CUDC101_4h_R1 2 SISLYYTGEK 10 0 P19338;H7BY16 P19338 NCL Nucleolin 0 0 ; ; 190.88 0.00017885 9325700 7318.7 5864.8 4608.8 5659.9 6121 6195.3 5643 5573.1 5767.7 4247.6 FALSE FALSE TRUE 6460.81308 6045.487536 4857.965669 5890.735186 5669.466025 6077.134975 5860.6524 6207.519177 5529.952965 4222.335086 1.530151669 1.431787722 1.150540061 1.39513683 1.342732376 1.439282968 1.38801215 1.470162611 1.309690693 1 12.04382536 -9.421699079 1.097864286 0.995358007 1.398776321 0.232023192 0.132561998 0.239655471 0.507160004 0.07551011 0.018166474 3.79E-10 9.421699079 0.403418314 NQGGYGGSSSS(ph)SSYGSGR ddPTM_HeLa_CUDC101_4h_R1 1 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-3;P09651-2;P09651;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 NQGGYGGS(0.045)S(0.045)S(0.103)S(0.808)SSYGSGR 173.77 2.01E-07 133840000 1908.6 1887.6 1779.3 1949.2 2042.9 1891.9 2022.6 2663.3 2216.7 2329.6 TRUE FALSE FALSE 1684.876801 1945.754719 1875.49434 2028.696801 1892.199337 1855.81516 2100.61236 2966.479307 2125.326688 2315.743436 0.727574901 0.840228969 0.809888657 0.87604558 0.817102321 0.80139066 0.907100643 1.281005167 0.917772951 1 11.17725971 -4.268213699 3.757621759 0.854773756 1.322445653 0.774328853 0.069505954 0.129206754 3.469934959 0.01402063 0.165445789 5.39E-05 4.268213699 0.467671897 EEIS(ph)S(ph)PDMCPRPES(ph)PVFGAS(ph)GQEELAK ddPTM_HeLa_CUDC101_4h_R1 1 EEISSPDMCPRPESPVFGASGQEELAK 27 1 Q5VT06;H0Y7F7;Q5T2X4 Q5VT06 CEP350 Centrosome-associated protein 350 4 0 EEIS(1)S(1)PDMCPRPES(1)PVFGAS(1)GQEELAK 40.669 0.002913 0 201.15 263.87 250.52 0 310.93 126.64 210.72 355.39 261.25 243.8 TRUE FALSE FALSE 177.5715019 271.9995219 264.063869 0 287.9933134 124.224553 218.847541 395.8461611 250.4811644 242.3498668 0.73270724 1.122342362 1.089597748 0 1.188336999 0.512583542 0.903023154 1.633366531 1.033551897 1 7.920947479 -4.268162613 5.071428882 0.841003438 1.667341603 0.329654218 0.339323478 0.131355121 10.75684424 0.042781868 0.375614672 5.39E-05 4.268162613 0.826338165 RS(ph)DSASSEPVGIYQGFEK ddPTM_HeLa_CUDC101_4h_R1 1 RSDSASSEPVGIYQGFEK 18 1 Q05655;Q05655-2 Q05655 PRKCD Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit 1 0 RS(0.268)DS(0.195)AS(0.268)S(0.268)EPVGIYQGFEK 86.08 0.0035913 21241000 3078.5 2800 2385.1 2811.6 2817.1 2809.7 2791.9 3089.1 2463.2 2995.7 TRUE FALSE FALSE 2717.642897 2886.264681 2514.045721 2926.269201 2609.288145 2756.109654 2899.584518 3440.750657 2361.665853 2977.881443 0.912609501 0.969234248 0.844239695 0.982668134 0.876222978 0.925526992 0.973707172 1.155435743 0.793069133 1 11.5400706 -4.268134343 3.486950343 0.944574452 1.179702126 0.505709937 0.066513437 0.149196001 3.135234389 0.007055906 0.091349813 5.39E-05 4.268134343 0.235127674 ETDYPAGEDLSES(ph)GQVDK ddPTM_HeLa_CUDC101_4h_R1 2 ETDYPAGEDLSESGQVDK 18 0 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5;H0YBS5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 ETDYPAGEDLS(0.006)ES(0.994)GQVDK;ETDYPAGEDLS(0.003)ES(0.997)GQVDK ; 189.56 1.63E-11 22481000 5095.4 4143.1 4304.2 3414.1 3952.2 3952.8 4457.3 6102.2 4434.8 3309.1 TRUE FALSE FALSE 4498.124936 4270.744 4536.898071 3553.341755 3660.65408 3877.406926 4629.219554 6796.849782 4251.995667 3289.417326 1.367453409 1.29832842 1.379240644 1.080234401 1.112857907 1.178751901 1.407306856 2.066277735 1.292628829 1 11.68361634 -4.26801666 2.335002908 1.189882632 2.271993164 0.817497397 0.120396365 0.220904164 1.427910727 0.02223118 0.481611414 5.39E-05 4.26801666 1.082110532 up TLEPVRPPVVPNDYVPSPT(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 TLEPVRPPVVPNDYVPSPTR 20 1 H0Y6B5;B7Z836;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-3;Q9NYB9-2;Q9NYB9-4;Q9NYB9;H7C3Q7 H0Y6B5 ABI2 Abl interactor 2 1 0 TLEPVRPPVVPNDYVPS(0.19)PT(0.81)R;TLEPVRPPVVPNDYVPS(0.205)PT(0.795)R ; 90.601 0.0021704 100366000 2223.1 2390.3 2160.04 2415.3 2701.3 2291.73 2007.89 1305.7 2225.19 2244.3 TRUE FALSE FALSE 1962.511588 2463.94231 2276.818296 2513.806374 2502.030481 2248.019069 2085.33499 1454.33561 2133.466726 2230.950804 0.879674973 1.104435968 1.020559616 1.126787005 1.121508586 1.007650668 0.934729258 0.651890489 0.956303798 1 11.12344298 -4.267990269 3.18410464 0.988174335 0.605165194 0.63954533 0.080593044 0.215780398 3.410158708 0.013928443 0.20297564 5.40E-05 4.267990269 -0.383009141 FGS(ph)NINLEADES ddPTM_HeLa_CUDC101_4h_R1 2 FGSNINLEADES 12 0 Q9NQP4 Q9NQP4 PFDN4 Prefoldin subunit 4 1 0 FGS(1)NINLEADES;FGS(1)NINLEADES ; 95.651 0.015238 7279700 6385.4 5002.1 4710 4774.6 5392.9 5545.5 5732.7 6873.5 5386.1 5701.5 TRUE FALSE FALSE 5636.913092 5156.208772 4964.636847 4969.328826 4995.076511 5439.728827 5953.812159 7655.951456 5164.082678 5667.587224 0.994587797 0.909771401 0.875970082 0.876797944 0.881340915 0.959796226 1.050502078 1.350830813 0.911160689 1 12.46851897 -4.267914794 2.508934147 0.963719448 1.432398395 0.836437512 0.05491492 0.188925709 1.489499453 0.009412207 0.186953253 5.40E-05 4.267914794 0.468678946 FSEGVLQS(ph)PSQDQEK ddPTM_HeLa_CUDC101_4h_R1 3 FSEGVLQSPSQDQEK 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 FS(0.002)EGVLQS(0.968)PS(0.03)QDQEK;FS(0.067)EGVLQS(0.932)PS(0.001)QDQEK;FSEGVLQS(0.987)PS(0.013)QDQEK ;; 208.38 1.90E-23 83819000 10880.3 9964.2 9392.2 9088 10779.3 8983.1 7779.3 4507.1 10308.8 11008.7 TRUE FALSE FALSE 9604.927727 10271.18519 9899.970742 9458.647922 9984.132514 8811.762334 8079.350207 5020.170046 9883.866901 10943.21976 0.877705825 0.938588954 0.904667087 0.864338661 0.912357855 0.805225749 0.738297355 0.458747074 0.903195505 1 13.41774966 -3.956340275 0.80716844 0.935869272 4.44E-24 0.9269892 0.038936784 0.834615201 0.282589647 0.008133565 0.782722539 0.000110576 3.956340275 -0.935869272 down DKPTYDEIFYTLS(ph)PVNGK ddPTM_HeLa_CUDC101_4h_R1 2 DKPTYDEIFYTLSPVNGK 18 1 A0A024R571;Q9H4M9 A0A024R571 EHD1 EH domain-containing protein 1 1 0 DKPTYDEIFYT(0.002)LS(0.998)PVNGK;DKPTYDEIFY(0.005)T(0.413)LS(0.581)PVNGK ; 124.45 4.50E-05 381890000 16090.8 14477.4 12742.2 13155.2 14991.2 13702.7 11496 6529.2 13759.5 15579 TRUE FALSE FALSE 14204.66082 14923.43153 13431.08188 13691.72592 13885.32904 13441.34383 11939.40457 7272.457736 13192.32759 15486.33542 0.917238355 0.963651576 0.867285999 0.884116581 0.896618126 0.867948644 0.770963837 0.469604819 0.851868905 1 13.91870817 -3.955868664 0.922568859 0.948010822 4.91E-30 0.873395245 0.049665931 0.737000943 0.323935945 0.007538198 0.79838885 0.000110696 3.955868664 -0.948010822 down SIVDK(ac)EGVPR ddPTM_HeLa_CUDC101_4h_R1 1 SIVDKEGVPR 10 1 Q99613-2;Q99613;B5ME19;H3BPE4;H3BPE3;H3BTY8 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 0 1 SIVDK(1)EGVPR 91.549 0.02039 764610 525.34 439.49 536.71 444 663.48 441.83 482.32 367.88 374.14 427.7 FALSE TRUE FALSE 463.7604416 453.030166 565.7261661 462.1082391 614.5364022 433.4028289 500.923244 409.7579722 358.7177908 425.1560214 1.090800596 1.065562154 1.330631904 1.086914488 1.445437372 1.019397132 1.178210395 0.963782592 0.843732119 1 8.73184856 -7.689072953 1.013438664 1.023510404 1.167675279 0.229714749 0.147054922 0.573167594 1.228015867 0.031483939 0.029941599 2.05E-08 7.689072953 0.144164875 QAST(ph)DAGTAGALTPQHVR ddPTM_HeLa_CUDC101_4h_R1 2 QASTDAGTAGALTPQHVR 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 QAS(0.306)T(0.687)DAGT(0.007)AGALTPQHVR;QAS(0.304)T(0.662)DAGT(0.034)AGALTPQHVR ; 172.99 1.08E-06 119386000 4777.5 3927.5 4167.1 3884.9 4792.9 4264.8 4866.5 7362.1 4649 5150.7 TRUE FALSE FALSE 4217.488692 4048.50162 4392.386031 4043.343014 4439.337316 4183.456046 5054.202535 8200.171705 4457.366252 5120.063407 0.823718059 0.79071318 0.857877272 0.789705653 0.867047332 0.81707114 0.987136708 1.601576202 0.870568565 1 12.32194596 -4.267786115 3.398149545 0.884049876 1.689159297 0.923687463 0.063830265 0.079415364 1.536586781 0.012211219 0.163788641 5.40E-05 4.267786115 0.805109421 SIVEGIIEEEEEDEEGSESISK ddPTM_HeLa_CUDC101_4h_R1 2 SIVEGIIEEEEEDEEGSESISK 22 0 Q9Y570-4;Q9Y570;Q9Y570-2 Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 0 0 ; ; 208.28 3.26E-26 12696800 10082.9 7595.5 7560.6 7879.7 8115 8127.1 7049.4 7015.1 8247.8 8948.4 FALSE FALSE TRUE 8900.997747 7829.508352 7969.348906 8201.068225 7516.372617 7972.089108 7321.297719 7813.670628 7907.822193 8895.174519 1.00065465 0.880197273 0.895918218 0.921968221 0.844994396 0.896226273 0.823063977 0.878416788 0.889001354 1 13.1188072 -7.257449089 6.940078173 1.000405335 0.876933398 0.373223212 0.043705375 0.037418484 11.77239456 0.004277298 0.005081422 5.53E-08 7.257449089 -0.123471937 SIVEGIIEEEEEDEEGSESISKR ddPTM_HeLa_CUDC101_4h_R1 2 SIVEGIIEEEEEDEEGSESISKR 23 1 Q9Y570-4;Q9Y570;Q9Y570-2 Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 0 0 ; ; 237.66 2.11E-46 16877700 2496.1 2243 2101.7 2145.42 2935.5 2463 2135.6 2476 2442.9 1831.2 FALSE FALSE TRUE 2203.510942 2312.104171 2215.324259 2232.919501 2718.954013 2416.022379 2217.970807 2757.857832 2342.202628 1820.307941 1.210515481 1.270171996 1.217005216 1.226671296 1.493678049 1.327260253 1.218459118 1.515050157 1.286706812 1 10.82996682 -12.50499036 0.078149093 6.20E-14 1.698274587 0.193906562 0.126013079 58.54572877 0.4339236 11.20126661 1.861697563 3.13E-13 12.50499036 1.698274587 (ac)ADLEEQLS(ph)DEEKVR ddPTM_HeLa_CUDC101_4h_R1 2 ADLEEQLSDEEKVR 14 1 P47755;C9JUG7;F8W9N7;P47755-2 P47755 CAPZA2 F-actin-capping protein subunit alpha-2 1 0 ADLEEQLS(1)DEEKVR;ADLEEQLS(1)DEEKVR ; 95.428 0.00076962 49746000 3073.6 2778.5 2163.77 2355.4 2733.1 2484.4 2585.8 2955.2 2832.6 2688.55 TRUE FALSE FALSE 2713.317267 2864.102292 2280.749951 2451.463393 2531.484658 2437.014209 2685.535172 3291.608023 2715.839029 2672.558385 1.015250886 1.071670616 0.853395744 0.917272156 0.947213978 0.911865658 1.004855567 1.231631848 1.016194462 1 11.38400575 -4.267768408 4.776137375 0.984360698 1.244448839 0.610954031 0.0617798 0.09806178 6.303717277 0.009067286 0.083864338 5.40E-05 4.267768408 0.26008814 LDIDS(ph)PPITAR ddPTM_HeLa_CUDC101_4h_R1 4 LDIDSPPITAR 11 0 P14618;B4DNK4;P14618-2;H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;H3BU13;H3BN34;H3BQZ3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 1 0 LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR;LDIDS(1)PPITAR ;;; 191.48 2.25E-11 1000540000 17714.4 15787 15071.7 14768.3 16397.5 15673.2 15355.1 16199.1 17618.5 15831.1 TRUE FALSE FALSE 15637.94489 16273.37876 15886.52169 15370.61511 15187.88909 15374.25982 15947.35135 18043.14006 16892.25797 15736.93591 0.993709638 1.034088138 1.009505394 0.976722228 0.965110945 0.976953831 1.013370801 1.146547216 1.073414677 1 13.94186705 -4.267704662 3.831694927 0.9956593 1.160629427 0.652622229 0.030647378 0.067545085 1.93718352 0.002673091 0.030949323 5.40E-05 4.267704662 0.164970126 DSENT(ph)PVKGGTVADLDEQDEETVTAGGK ddPTM_HeLa_CUDC101_4h_R1 1 DSENTPVKGGTVADLDEQDEETVTAGGK 28 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 DS(0.002)ENT(0.588)PVKGGT(0.41)VADLDEQDEETVTAGGK 82.627 1.77E-06 16795000 2562.6 2126.4 1639.8 1622.8 1575.9 2102.9 1279.4 930.02 2256.9 2232.5 TRUE FALSE FALSE 2262.215913 2191.911864 1728.452548 1688.984798 1459.648997 2062.790686 1328.746887 1035.889718 2163.869627 2219.220991 1.01937388 0.987694273 0.778855533 0.761071027 0.657730349 0.929511164 0.598744736 0.466780786 0.975058201 1 11.11583762 -3.955610233 0.304361755 1.03535684 3.97E-20 0.708430471 0.099779172 3.488560281 0.204208091 0.044351934 1.385514524 0.000110762 3.955610233 -1.03535684 down QAPAPTVIRDPPSITPAVKS(ph)PLPGPSEEK ddPTM_HeLa_CUDC101_4h_R1 2 QAPAPTVIRDPPSITPAVKSPLPGPSEEK 29 2 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 QAPAPTVIRDPPS(0.147)IT(0.117)PAVKS(0.705)PLPGPS(0.03)EEK;QAPAPT(0.016)VIRDPPS(0.198)IT(0.198)PAVKS(0.584)PLPGPS(0.004)EEK ; 58.294 0.0010722 92629000 3786.7 3736.6 4069.8 3300.7 4155.8 3387.3 2942.9 1781.3 4601.2 4200.9 TRUE FALSE FALSE 3342.828766 3851.720217 4289.825698 3435.316813 3849.234914 3322.692896 3056.408639 1984.075992 4411.536588 4175.91286 0.80050252 0.922366042 1.027278548 0.822650503 0.92177089 0.795680611 0.731913893 0.475123897 1.056424484 1 12.02787589 -3.944926938 0.921615736 0.911243369 8.76E-14 0.757263617 0.080544706 1.38117908 0.597463105 0.013163756 1.443905954 0.00011352 3.944926938 -0.911243369 down EREVDEDS(ph)EPEREVR ddPTM_HeLa_CUDC101_4h_R1 2 EREVDEDSEPEREVR 15 2 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EREVDEDS(1)EPEREVR;EREVDEDS(1)EPEREVR ; 111.73 0.001855 141154000 2732.7 2514.9 2599.9 2668.1 3467 2637.81 2763.4 3428.7 2440.7 2941.2 TRUE FALSE FALSE 2412.377049 2592.381088 2740.458458 2776.916651 3211.246317 2587.498169 2869.985264 3819.009349 2340.093313 2923.705612 0.825109422 0.88667651 0.937323665 0.949793522 1.098348036 0.885006397 0.981625938 1.306222259 0.800386093 1 11.51358234 -4.267506737 3.441049355 0.928428804 1.351287267 0.66636845 0.080838701 0.143052067 2.879707917 0.011815972 0.15629356 5.40E-05 4.267506737 0.422858463 GPPAS(ph)SPAPAPK ddPTM_HeLa_CUDC101_4h_R1 1 GPPASSPAPAPK 12 0 Q15942-2;Q15942;H0Y2Y8;H7C3D3 Q15942-2 ZYX Zyxin 1 0 GPPAS(0.649)S(0.351)PAPAPK 166.11 3.43E-05 914150000 7984.3 6061.9 5679.4 5917.2 5898.8 5387.5 6342.1 9432.8 6039.3 5782.9 TRUE FALSE FALSE 7048.392457 6248.659954 5986.445543 6158.528992 5463.657276 5284.742414 6586.716921 10506.59182 5790.357498 5748.503054 1.226126592 1.08700646 1.041392078 1.071327428 0.950448704 0.919324973 1.145814286 1.827709184 1.007280929 1 12.4889706 -4.267481715 4.459760489 1.077730686 1.87521866 0.876846694 0.08723735 0.060628989 2.992058715 0.015244269 0.150396567 5.40E-05 4.267481715 0.797487974 S(ph)PGYESESSR ddPTM_HeLa_CUDC101_4h_R1 2 SPGYESESSR 10 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 S(1)PGYESESSR;S(1)PGYESESSR ; 144.7 0.00084285 67348000 3252.8 2732.12 2610.5 2340.45 2536.44 2161.26 2330.03 982.93 2509.66 2624.25 TRUE FALSE FALSE 2871.511715 2816.293379 2751.631526 2435.903667 2349.331875 2120.037566 2419.900038 1094.822778 2406.210753 2608.640844 1.100769284 1.079601811 1.054814246 0.933782691 0.90059614 0.812698142 0.927647837 0.419690882 0.922400168 1 11.34908261 -3.944764335 0.65787367 1.047096612 2.41E-16 0.748757657 0.093094383 1.441286402 0.324511473 0.014656853 1.241768812 0.000113563 3.944764335 -1.047096612 down SIYGEKFEDENFILK ddPTM_HeLa_CUDC101_4h_R1 3 SIYGEKFEDENFILK 15 1 P62937;F8WE65;C9J5S7;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ;; ;; 177.38 3.01E-07 315322700 4148.09 4465.8 4065.15 4412.97 5561.9 4317.4 4321.49 4663.05 4505.8 4463.3 FALSE FALSE TRUE 3661.857178 4603.386005 4284.924305 4592.949991 5151.609718 4235.052788 4488.171317 5193.872763 4320.069017 4436.752093 0.825346357 1.037557634 0.96577952 1.03520546 1.161121832 0.954538973 1.011589384 1.170647504 0.97370079 1 12.11528823 -6.653851395 1.584284116 0.920518475 1.061214704 0.28348259 0.080509704 0.33160025 1.68724018 0.01570433 0.024082127 2.22E-07 6.653851395 0.140696229 SIYYITGESK ddPTM_HeLa_CUDC101_4h_R1 2 SIYYITGESK 10 0 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 0 0 ; ; 145.25 0.0044269 2843200 3347.8 2577.1 2596.5 2596.3 2833.4 2043.4 2775.8 2635.3 2581.1 3071.1 FALSE FALSE TRUE 2955.375959 2656.497396 2736.874644 2702.188336 2624.385727 2004.42555 2882.863536 2935.2919 2474.705966 3052.832961 0.968076536 0.8701745 0.896503241 0.885141235 0.859655854 0.656578848 0.944324034 0.96149771 0.810626064 1 11.57593294 -7.240992192 1.105382847 0.991465412 0.855733809 0 0.09706649 0.372026279 0.885249248 0.016626645 0.019951315 5.74E-08 7.240992192 -0.135731603 SK(ac)FADLSEAANR ddPTM_HeLa_CUDC101_4h_R1 2 SKFADLSEAANR 12 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 1 ; SK(1)FADLSEAANR;SK(1)FADLSEAANR 163.99 1.08E-05 4235900 2569.7 2535.5 2583.88 2028.29 2816.5 2705.1 3141.8 4257.1 2549.98 3078.3 FALSE TRUE FALSE 2268.483661 2613.61575 2723.572369 2111.012433 2608.732406 2653.504725 3262.980278 4741.711056 2444.868745 3059.990135 0.74133692 0.854125548 0.890059199 0.689875568 0.852529679 0.867161202 1.066336862 1.549583772 0.79897929 1 11.57931129 -4.270650972 2.001689242 0.857951933 1.746285192 0.874498755 0.08194739 0.243050714 1.043841678 0.01541551 0.391284477 5.36E-05 4.270650972 0.888333259 SK(ac)FDEMAK ddPTM_HeLa_CUDC101_4h_R1 2 SKFDEMAK 8 1 O15347;E7ES08;E7EQU1;E9PES6 O15347 HMGB3 High mobility group protein B3 0 1 ; SK(1)FDEMAK;SK(1)FDEMAK 123.88 0.0014126 3944700 4550.5 2557.8 1925 1946.28 3552.5 3582.1 4205.8 3539 2374.1 2096 FALSE TRUE FALSE 4017.097288 2636.602786 2029.071323 2025.657711 3290.439153 3513.777411 4368.019115 3941.865455 2276.238593 2083.532899 1.92802201 1.265448118 0.973860947 0.972222571 1.579259514 1.68645161 2.096448353 1.891914189 1.092489874 1 11.02481616 -1 0.039296332 5.35E-16 4.108479922 0.299382938 0.348513601 1043.756831 3.157543689 92.39527805 290.0638017 0.1 1 4.108479922 SK(ac)FDNLYGCR ddPTM_HeLa_CUDC101_4h_R1 2 SKFDNLYGCR 10 1 P23526-2;P23526 P23526-2 AHCY Adenosylhomocysteinase 0 1 ; SK(1)FDNLYGCR;SK(1)FDNLYGCR 113.44 0.0048515 1648840 555.52 547.56 364.83 354.92 885.23 788.65 779.71 344 414.51 273.11 FALSE TRUE FALSE 490.4027877 564.4296746 384.5538134 369.3951717 819.9283465 773.6078152 809.7836759 383.1595695 397.4237224 271.4855296 1.806368054 2.07904147 1.416479965 1.360644054 3.020154878 2.849536093 2.982787617 1.411344355 1.463885471 1 8.084731493 -7.571396233 0.241668033 0.739342651 2.738179546 0.313920782 0.592570526 1.528874703 0.348368552 1.207972427 1.037043418 2.68E-08 7.571396233 1.998836895 SK(ac)FEDMAK ddPTM_HeLa_CUDC101_4h_R1 1 SKFEDMAK 8 1 P26583;D6R9A6 P26583 HMGB2 High mobility group protein B2 0 1 SK(1)FEDMAK 96.89 0.018639 1102000 1582.3 1257.1 407.43 909.12 936.12 1580.5 1866.7 1228.7 343.04 155.07 FALSE TRUE FALSE 1396.825193 1295.829761 429.4568982 946.1978432 867.0642926 1550.354596 1938.699244 1368.570241 328.899746 154.1476367 9.061606276 8.406419899 2.786010264 6.138257213 5.624895139 10.05759562 12.57689891 8.878308292 2.133667132 1 7.268168961 -9.414958371 0.699853374 3.37E-11 8.040797288 0.499372056 2.542916555 0.730377349 0.505238621 3.668075117 0.576168344 3.85E-10 9.414958371 8.040797288 SK(ac)FENEEFFR ddPTM_HeLa_CUDC101_4h_R1 1 SKFENEEFFR 10 1 Q13951-2;H3BSC0;J3KRT0;A0A494C0A9;Q13951 Q13951-2;Q13951 CBFB Core-binding factor subunit beta 0 1 SK(1)FENEEFFR 111.5 0.0054529 868780 256.66 0 161.27 221.53 251.77 294.89 349.54 293.62 66.667 128.8 FALSE TRUE FALSE 226.5747039 0 169.988744 230.5649509 233.1974287 289.2654646 363.0218749 327.0445139 63.91895804 128.0338919 1.769646307 0 1.327685518 1.80081186 1.821372648 2.259288227 2.835357651 2.554358921 0.499234672 1 7.000381947 -5.435465131 1.202476675 1.258856633 2.716933531 0.623639453 0.520331821 0.2868328 0.770193531 0.081034209 0.302826927 3.67E-06 5.435465131 1.458076898 SK(ac)FVLVK ddPTM_HeLa_CUDC101_4h_R1 1 SKFVLVK 7 1 F8W1G0;P30040 F8W1G0 ERP29 Endoplasmic reticulum resident protein 29 0 1 SK(1)FVLVK 91.318 0.030698 494470 499.22 369.51 272.87 191.97 760.89 704.21 822.68 561.05 365.52 141.07 FALSE TRUE FALSE 440.7021884 380.8941651 287.6221776 199.7993664 704.7606606 690.7783675 854.4110432 624.9176642 350.4531109 140.2309094 3.142689371 2.716192649 2.051061202 1.424788353 5.025715542 4.926006475 6.092886704 4.456347513 2.499114585 1 7.13166057 -1 0.146598514 0.700744054 18.97789828 0.565133588 1.065801074 34.96999715 0.333974974 2.59168698 135.8011472 0.1 1 18.27715422 LLNNS(ph)DER ddPTM_HeLa_CUDC101_4h_R1 1 LLNNSDER 8 0 H7C5R6;Q4LE39-2;Q4LE39;H0Y7Y8;Q4LE39-4;Q4LE39-3 H7C5R6 ARID4B AT-rich interactive domain-containing protein 4B 1 0 LLNNS(1)DER 104.82 0.014426 5142500 3135.4 2964.7 2188.8 2350 2316 2408.2 2237.6 941.45 2742 2647.9 TRUE FALSE FALSE 2767.873165 3056.038893 2307.133149 2445.843158 2145.153294 2362.267597 2323.904982 1048.620863 2628.973599 2632.150173 1.051563544 1.161042757 0.876520334 0.929218698 0.814981347 0.897466878 0.882892247 0.398389451 0.998793164 1 11.36202609 -3.943317149 0.673259438 1.020087923 4.25E-33 0.72280751 0.101465096 1.725024862 0.405470721 0.017103809 1.48197725 0.000113942 3.943317149 -1.020087923 down EEAKES(ph)PSAAGPEDK ddPTM_HeLa_CUDC101_4h_R1 1 EEAKESPSAAGPEDK 15 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 EEAKES(0.5)PS(0.5)AAGPEDK 70.837 0.021232 13503000 2942 2639 2855.1 2725.7 2317.6 2286.3 2414.2 1141.8 2773.1 2597.9 TRUE FALSE FALSE 2597.14322 2720.304462 3009.455342 2836.865827 2146.635265 2242.692637 2507.316503 1271.777897 2658.791644 2582.447575 1.005690588 1.05338226 1.165350023 1.098518264 0.831240597 0.86843685 0.970907029 0.492469976 1.029562679 1 11.33452335 -3.937672153 1.15162898 1.013642157 3.45E-48 0.718798838 0.095090416 1.31297861 0.86448536 0.01435787 1.911676203 0.000115432 3.937672153 -1.013642157 down AVTGQTTQVS(ph)PPVIAGR ddPTM_HeLa_CUDC101_4h_R1 3 AVTGQTTQVSPPVIAGR 17 0 Q6MZP7;Q6MZP7-3 Q6MZP7 LIN54 Protein lin-54 homolog 1 0 AVTGQT(0.014)T(0.023)QVS(0.963)PPVIAGR;AVTGQT(0.001)T(0.014)QVS(0.985)PPVIAGR;AVTGQTT(0.002)QVS(0.998)PPVIAGR ;; 125.96 8.83E-05 16936800 2541.63 2925.33 2538.21 2975.13 3252.64 2827.8 2519.4 1835.74 2831.66 2881.06 TRUE FALSE FALSE 2243.703984 3015.45595 2675.43331 3096.468661 3012.699227 2773.864426 2616.574102 2044.713221 2714.937776 2863.923327 0.783437169 1.052910852 0.934184685 1.08119817 1.051948283 0.968554011 0.913632735 0.713955294 0.947978513 1 11.48377715 -4.267470027 4.04407407 0.937422241 0.695632169 0.396915874 0.087104268 0.243042219 8.399697321 0.015551165 0.169687779 5.40E-05 4.267470027 -0.241790073 S(ph)SSESLIFSGNQGR ddPTM_HeLa_CUDC101_4h_R1 1 SSSESLIFSGNQGR 14 0 Q8IZW8 Q8IZW8 TNS4 Tensin-4 1 0 S(0.982)S(0.015)S(0.003)ESLIFSGNQGR 148.85 0.00026898 11778000 1153 721.56 919.8 752.41 1014.2 923.68 916.31 994.21 1109.8 888.99 TRUE FALSE FALSE 1017.847088 743.7904083 969.5271702 783.096532 939.3844866 906.062343 951.6523836 1107.386848 1064.053574 883.7022479 1.151798686 0.841675361 1.097119728 0.886154283 1.063010181 1.025302748 1.076892569 1.253122135 1.204086078 1 9.787416544 -4.267442552 3.118615112 1.042203059 1.283830756 0.281792343 0.104086614 0.343706261 5.094629095 0.013400204 0.201427579 5.40E-05 4.267442552 0.241627697 ETDVS(ph)PFPPR ddPTM_HeLa_CUDC101_4h_R1 2 ETDVSPFPPR 10 0 Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3 Q9H8V3-2 ECT2 Protein ECT2 1 0 ET(0.02)DVS(0.98)PFPPR;ET(0.003)DVS(0.997)PFPPR ; 108.9 0.0087949 12958100 9486.1 8545 8029.5 7665.4 9483.3 8878.6 7439.5 3684.3 8420.4 8216.8 TRUE FALSE FALSE 8374.153738 8808.261322 8463.599058 7978.028145 8783.735852 8709.255498 7726.444007 4103.70582 8073.307548 8167.926108 1.025248469 1.078396303 1.036199268 0.976750774 1.075393648 1.066275011 0.945949303 0.502417109 0.98841584 1 12.9957541 -4.26743281 3.314445098 1.023413422 0.435240714 0.954265804 0.034486861 0.045020232 0.805023527 0.004809063 0.066776649 5.40E-05 4.26743281 -0.588172709 S(ph)SMEMEGIFNHK ddPTM_HeLa_CUDC101_4h_R1 7 SSMEMEGIFNHK 12 0 E7EPJ7;O75962-5;O75962-4;O75962;E7EWP2;O75962-2 E7EPJ7 TRIO Triple functional domain protein 1 0 S(0.5)S(0.5)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK;S(0.933)S(0.067)MEMEGIFNHK;S(0.913)S(0.087)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK;S(0.5)S(0.5)MEMEGIFNHK ;;;;;; 215.34 7.21E-24 151877000 21471 18980 18377.7 16886.8 20887.5 19601.3 16934.4 11508.9 18613.4 16294.2 TRUE FALSE FALSE 18954.20193 19564.7513 19371.25405 17575.51669 19346.67074 19227.43786 17587.56548 12819.02666 17846.14777 16197.28137 1.170208845 1.207903404 1.195957124 1.085090534 1.194439381 1.187078091 1.085834411 0.791430757 1.10179896 1 13.98346406 -4.267417436 4.543025876 1.114214549 0.771998233 0.699425563 0.066670897 0.111163337 5.8849017 0.01238027 0.120108199 5.40E-05 4.267417436 -0.342216316 QSQQPMKPIS(ph)PVKDPVS(ph)PASQK ddPTM_HeLa_CUDC101_4h_R1 3 QSQQPMKPISPVKDPVSPASQK 22 2 Q12888;Q12888-3;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 QS(0.211)QQPMKPIS(0.83)PVKDPVS(0.899)PAS(0.059)QK;QS(0.359)QQPMKPIS(0.994)PVKDPVS(0.629)PAS(0.018)QK;QS(0.007)QQPMKPIS(0.992)PVKDPVS(0.88)PAS(0.122)QK ;; 49.94 0.025572 212523000 9958.4 8444.38 8057 8372.3 9006.5 8302.3 8297.1 4275.45 9621.5 9888 TRUE FALSE FALSE 8791.091448 8704.541339 8492.585791 8713.758582 8342.108438 8143.94746 8617.121926 4762.149946 9224.897698 9829.185736 0.894386543 0.885581123 0.864017226 0.886518865 0.848707987 0.828547519 0.876687262 0.484490788 0.938521048 1 13.26285619 -3.936532892 1.352670455 0.92424759 9.60E-49 0.829171148 0.053868653 0.972141422 0.86837167 0.009933395 1.517234455 0.000115736 3.936532892 -0.92424759 down RAS(ph)LSEIGFGK ddPTM_HeLa_CUDC101_4h_R1 2 RASLSEIGFGK 11 1 F5H6Z0;Q00537-2;Q00537 F5H6Z0 CDK17 Cyclin-dependent kinase 17 1 0 RAS(0.96)LS(0.04)EIGFGK;RAS(0.982)LS(0.018)EIGFGK ; 115.04 0.0029574 51257000 16762.7 15926.9 14172.2 15127.6 18214.6 16882.8 14492.5 10426.4 14860 15120.6 TRUE FALSE FALSE 14797.80172 16417.58891 14938.392 15744.56892 16870.94525 16560.78872 15051.48058 11613.29923 14247.46451 15030.662 0.98450765 1.092273175 0.993861215 1.047496705 1.122435276 1.101800355 1.001385074 0.772640568 0.947893347 1 13.87562093 -4.26706812 5.01913975 1.019749185 0.761518092 0.65914821 0.055508739 0.081407994 6.399423903 0.008071389 0.072236913 5.41E-05 4.26706812 -0.258231093 LSSRIQS(ph)MLGNYDEMKDFIGDRS(ph)IPK ddPTM_HeLa_CUDC101_4h_R1 1 LSSRIQSMLGNYDEMKDFIGDRSIPK 26 3 Q9UHB7;Q9UHB7-2;Q9UHB7-3;C9JCE0 Q9UHB7 AFF4 AF4/FMR2 family member 4 2 0 LS(0.037)S(0.037)RIQS(0.491)MLGNY(0.449)DEMKDFIGDRS(0.986)IPK 45.011 0.017534 3971400 2705.1 2622.7 2443.9 2103.8 2730.8 2515.8 2440.9 2494.5 2578.3 2644.3 TRUE FALSE FALSE 2388.012279 2703.502278 2576.024626 2189.602057 2529.354325 2467.815307 2535.046331 2778.463797 2472.021383 2628.571586 0.908482878 1.02850624 0.98000931 0.833000733 0.962254305 0.938842723 0.964419742 1.057024207 0.940442861 1 11.36006331 -4.26705067 3.990446592 0.953228798 1.065867038 0.286660449 0.050483765 0.258599993 8.528429678 0.007500207 0.083354862 5.41E-05 4.26705067 0.11263824 SVPVNNLPERS(ph)PTDS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SVPVNNLPERSPTDSPR 17 1 P49454 P49454 CENPF Centromere protein F 2 0 SVPVNNLPERS(0.896)PT(0.31)DS(0.794)PR;SVPVNNLPERS(0.889)PT(0.223)DS(0.889)PR ; 78.554 0.016193 31866000 3666 3380.5 2554.1 3471.9 2966 2782.3 2388.6 1258.4 3902.6 3920.8 TRUE FALSE FALSE 3236.277037 3484.649198 2692.182372 3613.499089 2747.204089 2729.232263 2480.729102 1401.651169 3741.733176 3897.478907 0.830351392 0.894077757 0.690749696 0.927137561 0.704866955 0.700255814 0.636495838 0.359630213 0.960039365 1 11.9283255 -3.924389832 0.309930311 0.952530016 5.61E-31 0.786743723 0.08444158 3.189410466 0.189124925 0.035592319 1.190498758 0.000119017 3.924389832 -0.952530016 down DESTDS(ph)GLSMSSYSVPR ddPTM_HeLa_CUDC101_4h_R1 2 DESTDSGLSMSSYSVPR 17 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8;H0YCI3;P46937-4 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 DES(0.002)T(0.411)DS(0.574)GLS(0.007)MS(0.001)S(0.002)YS(0.002)VPR;DEST(0.01)DS(0.902)GLS(0.08)MS(0.006)S(0.001)YSVPR ; 165.89 1.35E-05 17016300 3048.8 2761.91 2772.94 2450.28 2661.3 2483.26 2968.4 4986.5 3040 2821.3 TRUE FALSE FALSE 2691.424286 2847.001173 2922.853524 2550.213009 2464.981201 2435.895953 3082.892182 5554.143004 2914.689913 2804.518782 0.959674188 1.015147836 1.042194313 0.909322849 0.878931964 0.868561112 1.099258882 1.980426389 1.039283435 1 11.45353753 -4.267033111 3.597348446 0.969023036 2.090317602 0.962383331 0.059891676 0.034774558 0.807756978 0.008268422 0.103827949 5.41E-05 4.267033111 1.121294565 AVSTVVVTTAPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 AVSTVVVTTAPSPK 14 0 Q6P4R8-3;Q6P4R8;Q6P4R8-2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 AVSTVVVT(0.004)T(0.164)APS(0.832)PK 200.55 1.12E-16 60056000 5267.3 4494.6 4969.8 4652.2 4805.2 4854.7 4996.1 5986.1 5456.3 5692.6 TRUE FALSE FALSE 4649.875079 4633.073299 5238.482421 4841.936825 4450.729969 4762.104686 5188.801251 6667.533427 5231.389005 5658.740162 0.821715602 0.818746429 0.925732985 0.855656327 0.78652312 0.841548569 0.916953439 1.178271706 0.924479452 1 12.46626518 -4.266831739 4.318426326 0.890062424 1.198359922 0.676968088 0.062128086 0.126360152 5.532481296 0.011548862 0.118289256 5.41E-05 4.266831739 0.308297498 KVAEPELMGT(ph)PDGTCYPPPPVPR ddPTM_HeLa_CUDC101_4h_R1 2 KVAEPELMGTPDGTCYPPPPVPR 23 1 P27708;F8VPD4;H7BZB3 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 KVAEPELMGT(0.944)PDGT(0.053)CY(0.003)PPPPVPR;KVAEPELMGT(1)PDGTCYPPPPVPR ; 109.14 9.64E-05 36334000 6565.9 5364.6 4781.2 4994.4 5590.4 4917.5 4213.2 2564 4848.1 3473.2 TRUE FALSE FALSE 5796.255155 5529.876967 5039.686134 5198.09322 5178.00733 4823.706881 4375.704535 2855.875396 4648.259266 3452.541252 1.678837335 1.601683098 1.45970338 1.505584681 1.499766969 1.397146776 1.267386605 0.827180673 1.346329827 1 11.75344294 -4.26671688 2.589960958 1.38679531 0.714045911 0.502887248 0.177579415 0.503812518 4.333733805 0.038047033 0.731298732 5.41E-05 4.26671688 -0.672749399 AEDGATPSPSNET(ph)PKKK ddPTM_HeLa_CUDC101_4h_R1 3 AEDGATPSPSNETPKKK 17 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGATPS(0.007)PS(0.087)NET(0.906)PKKK;AEDGATPS(0.003)PS(0.127)NET(0.87)PKKK;AEDGATPSPS(0.002)NET(0.998)PKKK ;; 74.618 0.017196 3561790000 14989.6 16447.3 16287.3 16673.4 20131.5 16741.6 19064.3 27187.5 15657.5 21177.5 TRUE FALSE FALSE 13232.54181 16954.02182 17167.8407 17353.41332 18646.43935 16422.28187 19799.61644 30282.4151 15012.09122 21051.53529 0.628578468 0.805357974 0.8155149 0.824330059 0.885751994 0.780099012 0.940530758 1.438489625 0.713111468 1 14.36163783 -4.266594113 2.797859467 0.821173957 1.548784548 0.802961218 0.093510411 0.197752306 2.121444494 0.018718299 0.326141387 5.41E-05 4.266594113 0.727610592 AQTSTDAPTSAPSAPPS(ph)TPTPSAGKR ddPTM_HeLa_CUDC101_4h_R1 1 AQTSTDAPTSAPSAPPSTPTPSAGKR 26 1 Q8IWZ8;B4DVK3;V9GZ08;Q8IWZ8-2 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 0 AQTSTDAPTSAPSAPPS(0.494)T(0.325)PT(0.173)PS(0.007)AGKR 160.1 4.19E-11 11591000 2922.5 3243.9 2800.8 3154.2 3237.7 3180.6 2634.5 1482.4 2966.4 2755.1 TRUE FALSE FALSE 2579.92898 3343.840714 2952.21972 3282.84191 2998.861321 3119.935354 2736.113547 1651.150424 2844.123736 2738.712543 0.942022553 1.220953518 1.077958958 1.198680715 1.094989443 1.139197819 0.999051016 0.602892928 1.038489324 1 11.41928213 -4.266552791 4.793848991 1.032276118 0.580510029 0.673018365 0.094900997 0.098697613 6.446978867 0.015792653 0.147389488 5.41E-05 4.266552791 -0.45176609 TPASTPVSGTPQAS(ph)PMIER ddPTM_HeLa_CUDC101_4h_R1 2 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 0 TPASTPVSGT(0.001)PQAS(0.999)PMIER;TPASTPVS(0.026)GT(0.186)PQAS(0.788)PMIER ; 169.62 2.00E-07 197181000 2546.4 2361.6 2008.39 2114.95 2374.27 2249.4 2315.64 2836.6 2476.3 2499.2 TRUE FALSE FALSE 2247.914852 2434.358097 2116.969638 2201.206803 2199.124832 2206.496443 2404.95501 3159.507078 2374.225866 2484.334647 0.904835769 0.979883326 0.852127406 0.88603474 0.8851967 0.888163938 0.968047929 1.271771934 0.955678764 1 11.27864381 -4.266337748 4.145382122 0.934846305 1.298059535 0.834636264 0.046397272 0.078933454 2.978658738 0.007871638 0.084462091 5.42E-05 4.266337748 0.36321323 SES(ph)DLEDVGPTAEWNGDGSGSLRR ddPTM_HeLa_CUDC101_4h_R1 2 SESDLEDVGPTAEWNGDGSGSLRR 24 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 S(0.159)ES(0.841)DLEDVGPTAEWNGDGSGSLRR;S(0.247)ES(0.746)DLEDVGPT(0.002)AEWNGDGS(0.001)GS(0.003)LRR ; 87.952 2.75E-05 15114500 1021.81 1010.97 1087.34 839.9 1248.01 998.26 1058.03 1361.2 1177.78 1127.92 TRUE FALSE FALSE 902.0349808 1042.116787 1146.124889 874.1547524 1155.946789 979.2198537 1098.838572 1516.153506 1129.23141 1121.211082 0.804518431 0.929456375 1.022220444 0.779652259 1.030980524 0.873359058 0.980046121 1.352246272 1.007153272 1 10.13084219 -4.266312548 3.251036021 0.91344517 1.411713929 0.677963121 0.085857867 0.144944598 2.437223052 0.012552556 0.180143025 5.42E-05 4.266312548 0.49826876 (ac)AS(ph)GVTVNDEVIK ddPTM_HeLa_CUDC101_4h_R1 2 ASGVTVNDEVIK 12 0 Q9Y281;G3V2U0;F8WDN3 Q9Y281 CFL2 Cofilin-2 1 0 AS(1)GVTVNDEVIK;AS(0.999)GVT(0.001)VNDEVIK ; 152.11 1.42E-23 356140000 23065.7 14913.6 16297 15169.5 20964.1 19960.7 16582.7 7287 14954.8 17214.5 TRUE FALSE FALSE 20361.97361 15373.07034 17178.06512 15788.17778 19417.62011 19579.9829 17222.30029 8116.522625 14338.35681 17112.10739 1.189916189 0.898373882 1.003854448 0.922631995 1.134729912 1.144218094 1.00643947 0.474314615 0.837907131 1 14.06272982 -4.266281736 4.084939061 1.066227166 0.426346792 0.64265335 0.116373807 0.085587094 3.064780146 0.014636816 0.159609306 5.42E-05 4.266281736 -0.639880375 NS(ph)SEKLPTELSK ddPTM_HeLa_CUDC101_4h_R1 2 NSSEKLPTELSK 12 1 P38432 P38432 COIL Coilin 1 0 NS(0.994)S(0.006)EKLPTELSK;NS(0.675)S(0.325)EKLPTELSK ; 73.758 0.027089 170820000 6386.9 5690.3 5388.5 6285.6 5936 6200.2 6237.2 7220.8 7016.1 6935.1 TRUE FALSE FALSE 5638.237264 5865.611398 5679.818609 6541.953937 5498.113106 6081.941515 6477.770893 8042.786685 6726.893388 6893.849717 0.817864835 0.850847007 0.823896494 0.948955113 0.797538869 0.882227168 0.939644924 1.166661157 0.975781844 1 12.75109413 -4.266246253 3.039720915 0.894003272 1.208664538 0.617447893 0.065587986 0.232714059 3.187099222 0.011166751 0.174997051 5.42E-05 4.266246253 0.314661267 SKPIPIMPAS(ph)PQKGHAVNLLDVPVPVAR ddPTM_HeLa_CUDC101_4h_R1 4 SKPIPIMPASPQKGHAVNLLDVPVPVAR 28 2 O00429-7;O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6 O00429-7 DNM1L Dynamin-1-like protein 1 0 SKPIPIMPAS(1)PQKGHAVNLLDVPVPVAR;S(0.011)KPIPIMPAS(0.989)PQKGHAVNLLDVPVPVAR;SKPIPIMPAS(1)PQKGHAVNLLDVPVPVAR;S(0.035)KPIPIMPAS(0.965)PQKGHAVNLLDVPVPVAR ;;; 73.058 2.88E-05 614034000 9429 8653.5 8205.7 8288.7 10344.6 8138.4 8544.2 9813.5 9816.1 9126 TRUE FALSE FALSE 8323.746913 8920.104078 8649.324963 8626.749013 9581.499467 7983.173579 8873.752656 10930.62917 9411.476203 9071.718146 0.91754911 0.983287172 0.953438458 0.95094985 1.056194572 0.880006792 0.978177729 1.204912785 1.037452449 1 13.1471601 -4.266165212 5.19919779 0.962024581 1.214824099 0.65194509 0.050382554 0.061741406 5.628845923 0.006294541 0.055431715 5.42E-05 4.266165212 0.252799519 SKGQESFK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 SKGQESFKK 9 2 P06748;P06748-3 P06748 NPM1 Nucleophosmin 0 1 ; SKGQESFK(1)K;SKGQESFK(1)K 113.67 0.0044883 49244000 11974.5 8056.6 14778.5 16350.4 13101.6 11401.9 14428.3 9017.2 11416.9 12066.4 FALSE TRUE FALSE 10570.86726 8304.814297 15577.47041 17017.23998 12135.12107 11184.42775 14984.80436 10043.6816 10946.29055 11994.62852 0.881300096 0.692377783 1.298703865 1.418738393 1.011712956 0.932453034 1.24929291 0.837348283 0.91259938 1 13.55010086 -6.750613967 24.99999737 0.923513365 1.12986113 0.304735701 0.180524164 244.5977514 564867.7219 0.028835684 0.040545732 1.78E-07 6.750613967 0.206347765 GSHS(ph)T(ph)KVEAVVRT(ph)LMK ddPTM_HeLa_CUDC101_4h_R1 1 GSHSTKVEAVVRTLMK 16 2 A0A0D9SFM0;Q149N8-4;Q149N8 A0A0D9SFM0 SHPRH E3 ubiquitin-protein ligase SHPRH 3 0 GS(0.058)HS(0.955)T(0.987)KVEAVVRT(1)LMK 56.708 0.0028816 0 968.59 689.52 760.05 977.14 1184.1 1001.6 826.12 380.3 960.51 919.92 TRUE FALSE FALSE 855.0533485 710.7632939 801.140602 1016.991993 1096.751302 982.4961488 857.9837251 423.5918148 920.9173713 914.4482749 0.935048348 0.777259155 0.876091764 1.112137253 1.19935849 1.074414131 0.938252877 0.463221186 1.007074316 1 9.836757757 -4.266075729 4.529077738 0.98136356 0.431215876 0.660623091 0.113703729 0.09648787 5.052459281 0.017001918 0.167554767 5.42E-05 4.266075729 -0.550147684 KDEMY(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 KDEMYR 6 1 D6REK8;F8W7L6;P42262-4;P42262-2;P42262;P42262-3 D6REK8 GRIA2 Glutamate receptor 2 1 0 KDEMY(1)R 41.302 0.040152 7039800 1716.7 1555.6 1657.1 1563.5 1586.8 1607.8 1654.6 2045.7 1808.6 1856 TRUE FALSE FALSE 1515.471028 1603.526192 1746.687838 1627.266288 1469.744925 1577.133894 1718.418476 2278.574219 1734.048742 1844.960429 0.821411128 0.869138528 0.946734581 0.882006065 0.796626801 0.854833453 0.931412104 1.235026065 0.939883975 1 10.84937416 -4.266044489 4.140265052 0.898517243 1.261449943 0.75806226 0.05809618 0.107925908 4.054660247 0.010707616 0.115342736 5.42E-05 4.266044489 0.362932701 SKMGKWCHHRFPCCR ddPTM_HeLa_CUDC101_4h_R1 1 SKMGKWCHHRFPCCR 15 3 A0A087X1W7;Q86YR6;Q495V5;A0A0G2JQ08;A0A0G2JQB7;A0A0C4DH93;A0A0A6YYL3;A0A0G2JMU2;A0JP26-2;H3BUK9;A0JP26-3;A0JP26 A0A087X1W7 POTED;POTEB;POTEB3;POTEB2 POTE ankyrin domain family member D;POTE ankyrin domain family member B3;POTE ankyrin domain family member B2 0 0 41.092 0.03532 18309000 669.5 467.53 550.37 425.63 709.32 425.32 641.98 613.87 750.96 580.56 FALSE FALSE TRUE 591.0222249 481.9340451 580.124667 442.9890311 656.9948768 417.2077296 666.7413836 683.7504795 720.0051109 577.1068033 1.024112385 0.835086404 1.005229298 0.767603204 1.138428577 0.722929841 1.155317144 1.184790191 1.247611546 1 9.172694528 -1.053374463 14.19457848 0.99198081 1.288740166 0 0.172994247 0 0 0.018317707 0 0.088435276 1.053374463 0.296759356 SKPGAAMVEMADGYAVDR ddPTM_HeLa_CUDC101_4h_R1 2 SKPGAAMVEMADGYAVDR 18 1 P14866;M0QXS5;A0A3B3ITJ4;P14866-2;M0QYT0 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 0 0 ; ; 98.169 0.0033773 29254000 3547.7 3214.2 3579 3263.2 3717.6 3367 3675.6 3529.5 3881.1 4099.1 FALSE FALSE TRUE 3131.843984 3313.225692 3772.491566 3396.287401 3443.360055 3302.780085 3817.369123 3931.284013 3721.119415 4074.718371 0.76860379 0.813117715 0.925828787 0.833502365 0.845054735 0.810554199 0.936842445 0.964798952 0.913221253 1 11.99248463 -9.559550281 1.352811387 0.999457097 0.850014389 0.196357606 0.065325412 0.342117698 1.128470939 0.04607142 0.011028902 2.76E-10 9.559550281 -0.149442708 KAPLNIPGT(ph)PVLEDFPQNDDEKER ddPTM_HeLa_CUDC101_4h_R1 2 KAPLNIPGTPVLEDFPQNDDEKER 24 2 Q15003;C9J470;E9PHA2;C9JZP1 Q15003 NCAPH Condensin complex subunit 2 1 0 KAPLNIPGT(1)PVLEDFPQNDDEKER;KAPLNIPGT(1)PVLEDFPQNDDEKER ; 78.674 0.00020066 22471000 6856.2 6302.1 6636.1 6783.4 7698.9 7094.2 6132.2 3955.5 7090.8 6617.8 TRUE FALSE FALSE 6052.526629 6496.260231 6994.867639 7060.056372 7130.967485 6958.889955 6368.721008 4405.778131 6798.514223 6578.437031 0.920055418 0.987508157 1.063302363 1.073211819 1.083991144 1.057833331 0.968120692 0.669730228 1.033454328 1 12.68352914 -4.265785609 4.706514796 0.992878147 0.651768452 0.77117516 0.055680393 0.082943286 5.040819985 0.009652432 0.092202694 5.42E-05 4.265785609 -0.341109695 AALAHSEEVT(ph)ASQVAATK ddPTM_HeLa_CUDC101_4h_R1 2 AALAHSEEVTASQVAATK 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 AALAHS(0.05)EEVT(0.648)AS(0.302)QVAATK;AALAHSEEVT(0.985)AS(0.015)QVAATK ; 157.84 7.80E-08 13977000 3990.08 2840.93 3342.02 3332.68 4227.2 3603.88 3606.12 4080.9 3419.98 3906.88 TRUE FALSE FALSE 3522.368871 2928.455686 3522.69971 3468.601095 3915.367878 3535.141993 3745.209256 4545.45316 3279.006977 3883.641704 0.906975756 0.754048882 0.907060944 0.893131076 1.008169181 0.910264711 0.96435499 1.170410019 0.844312433 1 11.92319439 -4.265750776 3.559049604 0.934020898 1.197048857 0.512265002 0.073495701 0.195587769 4.38242736 0.010602726 0.13625609 5.42E-05 4.265750776 0.263027959 IS(ph)ASSATR ddPTM_HeLa_CUDC101_4h_R1 2 ISASSATR 8 0 F5GZ78;A0A1B0GTU4;P49023;P49023-2;P49023-3;A0A1B0GU60;A0A1B0GV30;P49023-4 F5GZ78 PXN Paxillin 1 0 IS(0.994)AS(0.006)SATR;IS(0.939)AS(0.047)S(0.014)ATR ; 128.6 0.0058363 277234000 5373.5 4986.2 4898.2 4319.1 5990 5179.9 4354 2502.48 4076.3 4154.9 TRUE FALSE FALSE 4743.626476 5139.818912 5163.011508 4495.251567 5548.129634 5081.102038 4521.935238 2787.352208 3908.273189 4130.18647 1.148525983 1.244452024 1.250067411 1.088389495 1.343312142 1.230235505 1.094850141 0.674873212 0.946270397 1 12.0119912 -4.265700233 4.870273783 1.127321512 0.652110143 0.59253831 0.117074575 0.101265736 7.051705515 0.017370713 0.161445664 5.42E-05 4.265700233 -0.475211369 SSCS(ph)TPLSQANR ddPTM_HeLa_CUDC101_4h_R1 2 SSCSTPLSQANR 12 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(0.015)S(0.015)CS(0.636)T(0.334)PLSQANR;SSCS(0.499)T(0.499)PLS(0.001)QANR ; 193.15 2.05E-12 38928000 8350.1 6828.4 6883.9 6461.2 7687.8 6837.6 6260.3 5095.5 6858.9 5805.7 TRUE FALSE FALSE 7371.313936 7038.77491 7256.064457 6724.715664 7120.68631 6707.184172 6501.761868 5675.551123 6576.173239 5771.167438 1.277265651 1.219644896 1.257295778 1.165226228 1.233838108 1.162188456 1.126593872 0.983432067 1.139487514 1 12.49464747 -4.265349414 2.771509453 1.160225121 0.951173361 0.356292436 0.076304082 0.59657375 6.213414089 0.01582924 0.281383855 5.43E-05 4.265349414 -0.20905176 S(ph)RNTDEMVELR ddPTM_HeLa_CUDC101_4h_R1 2 SRNTDEMVELR 11 1 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 S(0.994)RNT(0.006)DEMVELR;S(0.998)RNT(0.002)DEMVELR ; 119.62 0.0024291 19322700 3767.7 3323.1 3354.8 3057.9 3523.1 3281.3 3292.3 3815.9 3697.9 3373.3 TRUE FALSE FALSE 3326.055917 3425.480772 3536.170636 3182.614379 3263.207932 3218.71467 3419.285114 4250.286632 3545.470997 3353.235462 0.991894532 1.021544956 1.054554825 0.949117476 0.973152041 0.959883285 1.01969729 1.267518097 1.057328374 1 11.71133808 -4.265276589 4.245225216 0.994945934 1.287764369 0.839748001 0.034664008 0.047120792 1.937986224 0.003921556 0.041451988 5.43E-05 4.265276589 0.292818435 MTNNEDS(ph)LSPTSSTLSNLELDAAEKDR ddPTM_HeLa_CUDC101_4h_R1 2 MTNNEDSLSPTSSTLSNLELDAAEKDR 27 1 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 0 MT(0.03)NNEDS(0.734)LS(0.18)PT(0.046)S(0.005)S(0.005)TLSNLELDAAEKDR;MT(0.025)NNEDS(0.564)LS(0.306)PT(0.073)S(0.025)S(0.006)T(0.001)LSNLELDAAEKDR ; 84.312 4.21E-05 46683000 3205.3 2674.4 2879.8 3020.4 3115.6 2616.9 2894.2 3405 3215.2 3193.6 TRUE FALSE FALSE 2829.579593 2756.795094 3035.490699 3143.584967 2885.768395 2566.986993 3005.830263 3792.611437 3082.668095 3174.604325 0.891317249 0.86839014 0.956179224 0.990228906 0.909016715 0.80860061 0.94683619 1.19467217 0.971040098 1 11.63236107 -4.265242654 5.823113942 0.933270105 1.20204396 0.669361933 0.056374383 0.069448786 10.46476323 0.008894043 0.073870083 5.43E-05 4.265242654 0.268773854 DAPTS(ph)PASVASSS(ph)STPSSK ddPTM_HeLa_CUDC101_4h_R1 1 DAPTSPASVASSSSTPSSK 19 0 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 2 0 DAPT(0.368)S(0.629)PAS(0.004)VAS(0.011)S(0.145)S(0.466)S(0.355)T(0.021)PSSK 106.7 0.0040531 27400000 2701.9 3034.5 2523.7 2373.8 2687.2 2237.9 2626.2 3763.7 3269.9 2920.2 TRUE FALSE FALSE 2385.187378 3127.989348 2660.138856 2470.613824 2488.97061 2195.215786 2727.493414 4192.144395 3135.113338 2902.830521 0.821676416 1.077565268 0.916394821 0.851105088 0.857428841 0.756232846 0.939597884 1.444157475 1.080019421 1 11.50324463 -4.265202064 5.216965382 0.906519889 1.466172084 0.701983082 0.101765898 0.059508036 5.508966522 0.01337844 0.11879632 5.43E-05 4.265202064 0.559652195 DLSMS(ph)EEDQMMR ddPTM_HeLa_CUDC101_4h_R1 1 DLSMSEEDQMMR 12 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 DLS(0.014)MS(0.986)EEDQMMR 208.51 2.38E-23 9597500 1029 638.36 824.91 756.14 852.44 855.13 858.71 1014.1 951.52 897.54 TRUE FALSE FALSE 908.3821799 658.027115 869.5071298 786.9786575 789.5571995 838.81982 891.8307323 1129.541045 912.2979429 892.2013922 1.018135802 0.737532042 0.974563745 0.88206392 0.88495401 0.940168697 0.999584556 1.266015784 1.02252468 1 9.801225589 -4.265002916 3.75959648 0.965454776 1.296162577 0.553543542 0.08565378 0.170646242 4.582825561 0.012831967 0.155312756 5.43E-05 4.265002916 0.330707801 TVNLSVTPS(ph)PAPR ddPTM_HeLa_CUDC101_4h_R1 1 TVNLSVTPSPAPR 13 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 TVNLS(0.026)VT(0.057)PS(0.917)PAPR 109.83 0.0046903 8993700 2058.2 1493.4 1870.2 1676.9 1531.6 1678.7 1767.1 2413.6 1844.3 1760.5 TRUE FALSE FALSE 1816.940916 1539.409884 1971.308669 1745.29123 1418.616919 1646.681594 1835.257639 2688.354468 1768.277173 1750.028468 1.038235063 0.879648481 1.126443772 0.997293051 0.810625053 0.940945604 1.048701591 1.536177564 1.010427662 1 10.77316268 -4.264934997 4.05415913 0.995724038 1.581476675 0.797905705 0.083640998 0.076190299 2.655197625 0.01164999 0.129609888 5.43E-05 4.264934997 0.585752637 DDSFDSLDS(ph)FGSR ddPTM_HeLa_CUDC101_4h_R1 1 DDSFDSLDSFGSR 13 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 DDSFDSLDS(0.953)FGS(0.047)R 191.01 6.23E-24 0 1514.7 818.03 837.03 901.69 1322.1 990.07 1157.2 1715.9 1190.9 1180.2 TRUE FALSE FALSE 1337.149162 843.2325347 882.2823737 938.4648156 1224.571317 971.1860643 1201.833592 1911.23112 1141.810598 1173.180118 1.139764595 0.718757948 0.752043408 0.799932424 1.043805038 0.827823494 1.024423763 1.62910289 0.973261122 1 10.19620881 -4.264871799 5.149568721 0.984883596 1.656729323 0.662621324 0.145553833 0.090812111 7.958901382 0.023926536 0.215177522 5.43E-05 4.264871799 0.671845727 S(ph)LAS(ph)SHSRSRSPS(ph)S(ph)RSHSR ddPTM_HeLa_CUDC101_4h_R1 1 SLASSHSRSRSPSSRSHSR 19 3 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 4 0 S(0.898)LAS(0.547)S(0.546)HS(0.006)RS(0.005)RS(0.008)PS(0.498)S(0.497)RS(0.497)HS(0.497)R 54.368 0.027676 35137000 2527.7 2408.1 1976.2 2177.4 2642.4 2291.6 2255.2 2355.1 2299.2 2445 TRUE FALSE FALSE 2231.406838 2482.290707 2083.03935 2266.203784 2447.475416 2247.891548 2342.183819 2623.195064 2204.426003 2430.457031 0.918101743 1.02132672 0.857056645 0.932418781 1.007002134 0.924884299 0.963680406 1.079301148 0.907000607 1 11.24701191 -4.264870065 5.198096637 0.956258254 1.084423222 0.383923752 0.048992451 0.130397324 11.88957208 0.006652569 0.059440891 5.43E-05 4.264870065 0.128164968 AASSSS(ph)PGSPVASSPSR ddPTM_HeLa_CUDC101_4h_R1 1 AASSSSPGSPVASSPSR 17 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 AASSS(0.003)S(0.609)PGS(0.387)PVAS(0.001)SPSR 169.15 5.63E-07 29406000 2416.9 1772.7 1683.3 2043.6 1877.5 2348.5 2436.7 3030.7 1833.9 2014.7 TRUE FALSE FALSE 2133.594646 1827.314786 1774.30429 2126.946841 1739.000566 2303.706275 2530.684335 3375.702637 1758.305866 2002.716475 1.065350324 0.912418113 0.885948816 1.06203093 0.868320897 1.15029077 1.263625864 1.685561925 0.877960454 1 10.96774248 -4.264849955 1.418585906 1.004987742 1.96102016 0.868733124 0.08601191 0.297067013 0.525897075 0.011531205 0.402011808 5.43E-05 4.264849955 0.956032418 NPSS(ph)SVPPPSAGSVK ddPTM_HeLa_CUDC101_4h_R1 1 NPSSSVPPPSAGSVK 15 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 NPS(0.318)S(0.621)S(0.061)VPPPSAGSVK 127.2 0.0001275 0 2515.5 1254.7 1473.8 1427.6 1392.2 1390.7 1954.1 4513.2 1204.6 1419.5 TRUE FALSE FALSE 2220.636903 1293.35582 1553.478086 1485.823699 1289.50018 1364.174715 2029.470292 5026.964445 1154.945878 1411.056751 1.57374032 0.916586678 1.100932393 1.052986492 0.913854229 0.96677523 1.438262699 3.562552989 0.818497114 1 10.4625603 -4.26472049 3.849480229 1.181481475 3.789297161 0.911885882 0.23052451 0.060203587 1.751632476 0.037224692 0.439446174 5.44E-05 4.26472049 2.607815686 up AAVGEEKDINTFVGT(ph)PVEK ddPTM_HeLa_CUDC101_4h_R1 1 AAVGEEKDINTFVGTPVEK 19 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 AAVGEEKDINT(0.011)FVGT(0.989)PVEK 70.699 0.015564 16304000 915.06 1132.7 1277.5 889.68 988.86 1083.3 884.95 298.39 768.97 1126.2 TRUE FALSE FALSE 807.7980539 1167.597144 1346.565514 925.9649959 915.9137679 1062.637857 919.0828179 332.3575115 737.2727311 1119.501312 0.721569546 1.042961836 1.202826204 0.827122743 0.818144434 0.949206442 0.820975204 0.296879966 0.658572458 1 10.1286405 -4.264591199 3.474642709 0.899910038 0.224560825 0.58963178 0.150630596 0.160807456 3.329672914 0.021226346 0.283535073 5.44E-05 4.264591199 -0.675349212 GSSMGVRNS(ph)PQALR ddPTM_HeLa_CUDC101_4h_R1 1 GSSMGVRNSPQALR 14 1 Q7L7X3;Q7L7X3-3 Q7L7X3 TAOK1 Serine/threonine-protein kinase TAO1 1 0 GSSMGVRNS(1)PQALR 97.235 0.0051707 32571000 1183.4 1347.5 1251.9 1084.3 1405.9 929.62 1087.6 1683.8 1042.9 984.62 TRUE FALSE FALSE 1044.683646 1389.014878 1319.581501 1128.522441 1302.189558 911.8890474 1129.549096 1875.476986 999.9112206 978.7634365 1.067350503 1.419152807 1.34821291 1.153008376 1.330443608 0.931674615 1.154057308 1.916169849 1.021606635 1 9.934816398 -4.264441539 5.118298706 1.105350416 1.951836258 0.654805395 0.16132806 0.075194674 6.424749917 0.024612606 0.223370198 5.44E-05 4.264441539 0.846485842 NS(ph)TELAPPLPVR ddPTM_HeLa_CUDC101_4h_R1 3 NSTELAPPLPVR 12 0 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 NS(0.998)T(0.002)ELAPPLPVR;NS(0.678)T(0.322)ELAPPLPVR;NS(0.789)T(0.211)ELAPPLPVR ;; 145.49 0.00097753 37465000 8210.4 5843.7 6384.7 6168.2 6088 5579.9 4591.73 2294.19 5932.4 8046.9 TRUE FALSE FALSE 7247.989358 6023.737471 6729.876195 6419.765857 5638.900369 5473.472704 4768.834564 2555.351316 5687.863961 7999.036681 0.906107779 0.753057863 0.841335834 0.802567373 0.704947432 0.684266484 0.596176109 0.319457382 0.711068618 1 12.96561055 -4.264397057 0.317990071 0.985450581 5.10E-20 0.653447422 0.103916695 1.553511976 0.113041882 0.025248197 0.592283878 5.44E-05 4.264397057 -0.985450581 TALPTSGSS(ph)AGELELLAGEVPAR ddPTM_HeLa_CUDC101_4h_R1 1 TALPTSGSSAGELELLAGEVPAR 23 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 T(0.001)ALPT(0.012)S(0.301)GS(0.09)S(0.596)AGELELLAGEVPAR 174.81 4.81E-10 3637000 1663.7 1062.3 1222.6 1063.7 933.94 867.12 1203.1 1963 1177.7 1122.7 TRUE FALSE FALSE 1468.683608 1095.028204 1288.697454 1107.082284 865.0451069 850.5811307 1249.50397 2186.459985 1129.154708 1116.02213 1.315998642 0.981188611 1.154723924 0.991989543 0.775114653 0.762154358 1.119605011 1.959154685 1.011767309 1 10.12414992 -4.26438529 5.764654255 1.077445242 1.9853003 0.732814191 0.16756855 0.067098273 9.654177807 0.028295513 0.238797452 5.44E-05 4.26438529 0.907855058 DSENTPVKGGT(ph)VADLDEQDEETVTAGGK ddPTM_HeLa_CUDC101_4h_R1 1 DSENTPVKGGTVADLDEQDEETVTAGGK 28 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 DS(0.003)ENT(0.02)PVKGGT(0.977)VADLDEQDEETVTAGGK 93.392 1.95E-08 17984000 1977.7 1514.4 1318.5 1350.9 1294.1 1434.7 1045.5 747.95 1538.2 1720.1 TRUE FALSE FALSE 1745.877004 1561.056869 1389.782098 1405.995541 1198.636821 1407.335488 1085.825285 833.0936047 1474.794745 1709.868769 1.021059064 0.912968818 0.812800446 0.822282719 0.701011003 0.823066374 0.635034282 0.487226634 0.86251926 1 10.73966989 -3.921322295 0.30370322 1.034170034 4.97E-16 0.752100909 0.077287931 2.241275123 0.128663266 0.027512734 0.890600239 0.000119861 3.921322295 -1.034170034 down VTSSMS(ph)SPSMQPK ddPTM_HeLa_CUDC101_4h_R1 6 VTSSMSSPSMQPK 13 0 A0A2R8Y7R9;Q13136-2;Q13136 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 VTS(0.005)S(0.022)MS(0.381)S(0.381)PS(0.211)MQPK;VTSS(0.001)MS(0.896)S(0.1)PS(0.002)MQPK;VTSSMS(0.919)S(0.074)PS(0.006)MQPK;VTS(0.002)S(0.023)MS(0.888)S(0.086)PS(0.001)MQPK;VTS(0.005)S(0.027)MS(0.914)S(0.054)PSMQPK;VTSSMS(0.497)S(0.497)PS(0.007)MQPK ;;;;; 179.67 1.04E-07 199869000 26343.7 23299.9 23196.9 22602.5 25219.4 22534.1 22731.4 24435.2 24997.7 23676.1 TRUE FALSE FALSE 23255.73142 24017.7423 24450.99458 23524.32765 23359.01511 22104.29959 23608.15771 27216.8044 23967.28423 23535.2735 0.98812242 1.020499817 1.038908453 0.999534917 0.992510884 0.939198756 1.003096807 1.156426093 1.018355883 1 14.522537 -4.264161608 5.839849325 0.995792996 1.160992414 0.776898948 0.025078263 0.043464966 6.638606236 0.00339098 0.028506014 5.44E-05 4.264161608 0.165199418 NVIPDT(ph)PPSTPLVPSR ddPTM_HeLa_CUDC101_4h_R1 1 NVIPDTPPSTPLVPSR 16 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 NVIPDT(0.868)PPS(0.066)T(0.066)PLVPSR 106.38 0.010799 9098200 988.49 1055 877.35 1105.4 872.26 955.42 970.05 1159 1037.2 1111.5 TRUE FALSE FALSE 872.6207007 1087.5033 924.7821948 1150.48299 807.9151176 937.1969553 1007.465153 1290.935875 994.446177 1104.888749 0.789781507 0.984264978 0.836991232 1.041265912 0.731218522 0.848227441 0.911824973 1.168385393 0.900041908 1 10.1096854 -4.264150915 4.976530779 0.89481304 1.181560758 0.448325971 0.091577656 0.132186278 10.05422476 0.013968978 0.129810089 5.44E-05 4.264150915 0.286747718 TPSSS(ph)PPITPPASETK ddPTM_HeLa_CUDC101_4h_R1 2 TPSSSPPITPPASETK 16 0 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 T(0.009)PS(0.029)S(0.122)S(0.808)PPIT(0.03)PPAS(0.001)ETK;T(0.09)PS(0.002)S(0.372)S(0.526)PPIT(0.011)PPASETK ; 145.69 0.00024707 76844000 8427.1 8480 8409.5 8047.9 8594.8 8132.1 9969 16192.2 9034.2 9207 TRUE FALSE FALSE 7439.288113 8741.258749 8864.143007 8376.128148 7960.778727 7976.993742 10353.50767 18035.4546 8661.806452 9152.236355 0.812838286 0.95509539 0.968522082 0.915200157 0.86981787 0.871589569 1.131254403 1.970606298 0.9464142 1 13.15990859 -4.264138988 2.629532105 0.912460884 2.183472275 0.971941745 0.053532832 0.070900686 0.63366117 0.010280276 0.196865536 5.44E-05 4.264138988 1.27101139 AGVVNGTGAPGQS(ph)PGAGR ddPTM_HeLa_CUDC101_4h_R1 3 AGVVNGTGAPGQSPGAGR 18 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;Q13330-2 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 AGVVNGTGAPGQS(1)PGAGR;AGVVNGTGAPGQS(1)PGAGR;AGVVNGTGAPGQS(1)PGAGR ;; 213.64 2.82E-24 55381800 6090.6 5466.5 6440.1 5761.8 6826.3 6330.1 5542.4 3575.61 6643.5 6029.6 TRUE FALSE FALSE 5376.669101 5634.916386 6788.271286 5996.791109 6322.737449 6209.363889 5756.172225 3982.642989 6369.652118 5993.735671 0.897048084 0.940134283 1.132561003 1.000509772 1.054890939 1.035975597 0.960364711 0.664467572 1.062718222 1 12.54923975 -4.263986331 5.111417206 0.978607879 0.650500676 0.668722611 0.069981189 0.083693811 7.111021837 0.010546113 0.096292602 5.45E-05 4.263986331 -0.328107203 KPSPSES(ph)PEPWKPFPAVSPEPR ddPTM_HeLa_CUDC101_4h_R1 2 KPSPSESPEPWKPFPAVSPEPR 22 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 KPS(0.049)PS(0.188)ES(0.763)PEPWKPFPAVSPEPR;KPS(0.021)PS(0.127)ES(0.85)PEPWKPFPAVS(0.002)PEPR ; 70.02 0.0014046 186597000 4178.4 3763.3 3733.2 4183.9 3858.7 3704.6 3975.5 5766.8 4185.7 3917.9 TRUE FALSE FALSE 3688.614286 3879.242812 3935.028084 4354.537526 3574.051389 3633.940927 4128.836367 6423.269202 4013.163674 3894.596157 0.947110853 0.996057783 1.010381546 1.11809732 0.917694992 0.933072591 1.060144929 1.649277343 1.030444111 1 11.92725802 -4.263981659 3.667529045 0.982568864 1.720746995 0.926907727 0.054767218 0.046837772 1.156663789 0.007453861 0.093680327 5.45E-05 4.263981659 0.738178131 SKSDPIMLLK(ac)DR ddPTM_HeLa_CUDC101_4h_R1 1 SKSDPIMLLKDR 12 2 P08559-3;P08559;P08559-2;P08559-4;Q5JPU3 P08559-3 PDHA1 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial" 0 1 SKSDPIMLLK(1)DR 120.6 0.0026359 3402100 5168 4794.8 3492.6 3988.3 4467 3903.3 3262.8 3643.1 2898.5 2589.6 FALSE TRUE FALSE 4562.214874 4942.522105 3681.420521 4150.960113 4137.47831 3828.851056 3388.647289 4057.815778 2779.022603 2574.196944 1.772286648 1.920024851 1.43012388 1.612526238 1.607288952 1.487396318 1.316390068 1.576342396 1.07956876 1 11.32990672 -9.373972044 1.106669166 1.001144099 1.597876541 0.649007188 0.161397492 0.261838266 0.575413207 0.119633806 0.031119372 4.23E-10 9.373972044 0.596732442 SKSEEAHAEDSVMDHHFR ddPTM_HeLa_CUDC101_4h_R1 4 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 0 ;;; ;;; 75.376 0.0052978 107862000 35389.9 20995.7 21570.8 18453.8 51267 37915.4 37945.6 35713.6 37240.8 30941.6 FALSE FALSE TRUE 31241.54957 21642.55263 22736.9827 19206.42573 47485.13555 37192.22692 39409.1745 39779.09186 35705.71846 30757.55799 1.015735696 0.703649901 0.739232377 0.624445729 1.54385259 1.209206106 1.281284246 1.293311123 1.160876246 1 14.90865334 -5.7533962 24.99999353 0.936002263 1.319532293 0.603231512 0.177605548 114.6290601 356289.7302 0.026615876 0.052489128 1.76E-06 5.7533962 0.38353003 FGESTTGFNFS(ph)FK ddPTM_HeLa_CUDC101_4h_R1 1 FGESTTGFNFSFK 13 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 FGESTTGFNFS(1)FK 123.76 0.0018222 20349000 1259.8 1225.8 1055.2 1231.1 1514.9 1447.2 1152.9 659.48 1128.5 1240.6 TRUE FALSE FALSE 1112.128154 1263.565445 1112.247304 1281.309579 1403.148845 1419.597071 1197.367739 734.5525375 1081.982752 1233.220856 0.901807773 1.024605965 0.90190439 1.038994413 1.137792017 1.151129633 0.970927254 0.595637459 0.877363326 1 10.26821548 -4.263891843 6.183689275 0.986394375 0.58658986 0.643955192 0.089826726 0.064515603 12.92153925 0.013197738 0.108378333 5.45E-05 4.263891843 -0.399804515 FSTLTDDPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 FSTLTDDPSPR 11 0 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-4 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 FSTLT(0.005)DDPS(0.995)PR;FSTLT(0.001)DDPS(0.999)PR;FSTLTDDPS(1)PR ;; 163.45 7.49E-05 53357200 9618.9 8509.1 7918 8138.5 9522.1 9514 8004.2 5605.2 8199.9 7991.5 TRUE FALSE FALSE 8491.387123 8771.255285 8346.071031 8470.423208 8819.673654 9332.536301 8312.924675 6243.273311 7861.896651 7943.966203 1.068910278 1.104140559 1.050617641 1.066271305 1.110235546 1.17479557 1.046445121 0.785913881 0.989668945 1 12.95564377 -4.263842899 6.228116849 1.056964601 0.779799811 0.723249121 0.051969127 0.055484304 11.50573712 0.007944469 0.065082266 5.45E-05 4.263842899 -0.27716479 SKSVLIHPSAPDFKVAQVPFTTKK ddPTM_HeLa_CUDC101_4h_R1 1 SKSVLIHPSAPDFKVAQVPFTTKK 24 3 F5GYN0;A6NE01 F5GYN0 FAM186A Protein FAM186A 0 0 8.5811 0.039036 2856800 3168.6 1236.1 1197.4 1322.7 2932.2 2497.3 3030 2548.5 2572.9 2172.6 FALSE FALSE TRUE 2797.181511 1274.182776 1262.135066 1376.645423 2715.897448 2449.668163 3146.868115 2838.610939 2466.843973 2159.677279 1.295184951 0.589987582 0.584409105 0.637431081 1.257547817 1.134275101 1.457101089 1.314368108 1.142228053 1 11.07660003 -5.094543212 2.025505398 1.022891413 1.377668896 0.283889029 0.261478758 0.468374412 3.668004004 0.045424802 0.166060063 8.04E-06 5.094543212 0.354777482 SDLPGSDKDTEESGLHLS(ph)PTAAEAK ddPTM_HeLa_CUDC101_4h_R1 2 SDLPGSDKDTEESGLHLSPTAAEAK 25 1 Q15599-2 Q15599-2 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 0 SDLPGS(0.002)DKDT(0.002)EES(0.002)GLHLS(0.744)PT(0.25)AAEAK;SDLPGSDKDT(0.001)EES(0.003)GLHLS(0.941)PT(0.055)AAEAK ; 84.561 2.09E-05 60584000 5201.3 4153.1 4167.5 3582.6 5494 5373.2 4426.2 2732.39 5600.2 4880.5 TRUE FALSE FALSE 4591.611499 4281.052088 4392.807656 3728.713913 5088.718566 5270.715162 4596.920017 3043.434233 5369.357386 4851.470569 0.946437051 0.882423593 0.905458993 0.768573953 1.048902285 1.086415982 0.947531259 0.627322003 1.10674842 1 12.24420641 -4.263818901 6.060082957 0.961075564 0.61897811 0.526433426 0.096298417 0.071085153 12.91845613 0.012071119 0.100120215 5.45E-05 4.263818901 -0.342097454 SQDATFS(ph)PGSEQAEKS(ph)PGPIVSR ddPTM_HeLa_CUDC101_4h_R1 2 SQDATFSPGSEQAEKSPGPIVSR 23 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 0 S(0.004)QDAT(0.075)FS(0.906)PGS(0.365)EQAEKS(0.603)PGPIVS(0.048)R;S(0.009)QDAT(0.186)FS(0.714)PGS(0.103)EQAEKS(0.948)PGPIVS(0.041)R ; 56.247 0.015923 126671000 8167.7 7884.3 8169.8 6788.6 8082.5 7457.7 5795.5 3731.3 9230.9 8889.7 TRUE FALSE FALSE 7210.294587 8127.205938 8611.4841 7065.468451 7486.270078 7315.456798 6019.034376 4156.05611 8850.398395 8836.823669 0.815937361 0.919697647 0.974499936 0.799548425 0.84716753 0.827837815 0.681130981 0.470311083 1.001536154 1 13.10931218 -3.920566117 0.735272215 0.912785237 6.57E-19 0.834793831 0.062977177 1.464127075 0.398513114 0.012547133 1.237683196 0.00012007 3.920566117 -0.912785237 down KAAAGPLDMSLPST(ph)PDIK ddPTM_HeLa_CUDC101_4h_R1 1 KAAAGPLDMSLPSTPDIK 18 1 K7ELQ4;P17544-4;P17544-2;P17544 K7ELQ4 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 KAAAGPLDMSLPS(0.247)T(0.753)PDIK 134.58 0.00070015 21960000 4608.2 3946.3 3316 3065 3440.1 3634.7 4215.3 7553 4383.8 4607.9 TRUE FALSE FALSE 4068.033782 4067.880825 3495.27299 3190.003948 3186.330677 3565.374153 4377.885533 8412.80299 4203.097909 4580.492006 0.888121577 0.888088184 0.763078068 0.696432598 0.69563066 0.778382355 0.955767531 1.836659245 0.917608393 1 12.16128686 -4.263801558 4.486158881 0.883244986 1.898865009 0.888349066 0.105143743 0.059124057 2.98625272 0.018563156 0.188714834 5.45E-05 4.263801558 1.015620023 TYSLGS(ph)ALRPSTSR ddPTM_HeLa_CUDC101_4h_R1 2 TYSLGSALRPSTSR 14 1 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 TYSLGS(0.988)ALRPS(0.008)T(0.002)S(0.002)R;TYSLGS(0.8)ALRPS(0.148)T(0.045)S(0.006)R ; 134.4 0.0034933 173798000 4511.5 3477.1 3752.4 3685.2 3907.7 4441.4 3611 2269.2 3403.5 3572.8 TRUE FALSE FALSE 3982.668809 3584.22533 3955.266094 3835.498385 3619.436756 4356.687695 3750.27748 2527.516556 3263.206289 3551.548827 1.121389288 1.009200635 1.113673579 1.079950909 1.019115021 1.226700774 1.055955489 0.711666002 0.918812171 1 11.7942326 -4.263766267 6.292874012 1.069417731 0.703898172 0.632961348 0.079494992 0.049261377 10.74493391 0.009430154 0.077001026 5.45E-05 4.263766267 -0.365519559 QAAS(ph)PLEPK ddPTM_HeLa_CUDC101_4h_R1 2 QAASPLEPK 9 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;Q14980-4;Q14980-3;F5H6Y5;F5H4J1 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 QAAS(1)PLEPK;QAAS(1)PLEPK ; 120.53 0.005571 133316000 15675.9 13384.1 14876.5 14128.8 13937.8 13161.9 14535.9 20519 15026.3 16289.1 TRUE FALSE FALSE 13838.39477 13796.44826 15680.76859 14705.03353 12909.63626 12910.85869 15096.55453 22854.80002 14406.90955 16192.21171 0.854632771 0.852042235 0.968414252 0.908154723 0.797274424 0.797349919 0.93233431 1.411468701 0.889743156 1 13.98301244 -4.263738649 5.434963571 0.907187468 1.429944616 0.850856217 0.065313113 0.050791054 5.61139139 0.011192153 0.098446234 5.45E-05 4.263738649 0.522757148 LLSSES(ph)EDEEEFIPLAQR ddPTM_HeLa_CUDC101_4h_R1 1 LLSSESEDEEEFIPLAQR 18 0 Q96AY2;Q96AY2-2;D6RIT8;F8W714 Q96AY2 EME1 Crossover junction endonuclease EME1 1 0 LLSS(0.012)ES(0.988)EDEEEFIPLAQR 156.72 3.86E-05 4314200 710.62 791.72 595.92 888.45 661.52 625.24 708.31 1076.3 942.29 782.41 TRUE FALSE FALSE 627.3222008 816.1119548 628.1372378 924.6848312 612.7209875 613.3145887 735.629754 1198.821641 903.4484074 777.7561905 0.806579502 1.049315923 0.807627436 1.188913496 0.787805992 0.788569215 0.945835935 1.541384892 1.161608764 1 9.603174163 -4.2637242 5.323983905 0.913144923 1.566017618 0.584489138 0.147529832 0.064360287 6.500789557 0.01715487 0.152871231 5.45E-05 4.2637242 0.652872694 ADIPVKSS(ph)PQAAVPYKK ddPTM_HeLa_CUDC101_4h_R1 2 ADIPVKSSPQAAVPYKK 17 2 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 ADIPVKS(0.29)S(0.71)PQAAVPYKK;ADIPVKS(0.243)S(0.757)PQAAVPYKK ; 89.859 0.005908 51358000 4059.7 3138 3920.9 3887.5 4269.7 4224.9 3564.6 1938.06 3788.2 3869.3 TRUE FALSE FALSE 3583.82812 3234.678061 4132.875714 4046.049053 3954.732737 4144.317072 3702.087816 2158.680916 3632.048793 3846.285232 0.931763482 0.840987567 1.07451098 1.051936819 1.028195388 1.077485632 0.962509953 0.561237866 0.944300429 1 11.90925004 -4.263710554 5.482794056 0.983098307 0.546219066 0.772727758 0.069777034 0.054370732 6.24260272 0.010144444 0.088792489 5.45E-05 4.263710554 -0.436879241 GWLRDPSAS(ph)PGDAGEQAIR ddPTM_HeLa_CUDC101_4h_R1 2 GWLRDPSASPGDAGEQAIR 19 1 P18206-2;P18206 P18206-2 VCL Vinculin 1 0 GWLRDPS(0.006)AS(0.994)PGDAGEQAIR;GWLRDPS(0.08)AS(0.92)PGDAGEQAIR ; 94.359 0.0013997 87025000 3211.4 2846.6 2119.8 2611.3 2330.16 2511.1 2803.2 4059.4 2724.3 3181.3 TRUE FALSE FALSE 2834.96456 2934.300372 2234.4028 2717.800101 2158.268739 2463.204951 2911.320363 4521.505687 2612.003201 3162.377486 0.89646621 0.92787796 0.706557901 0.859416725 0.682482957 0.778909211 0.920611273 1.429780508 0.825961863 1 11.62679387 -4.263644093 5.474531355 0.894594953 1.448949605 0.718959655 0.105804683 0.07253261 8.27246012 0.017119072 0.150095521 5.45E-05 4.263644093 0.554354652 SLADELALVDVLEDK ddPTM_HeLa_CUDC101_4h_R1 3 SLADELALVDVLEDK 15 0 A0A5F9ZHM4;P07195;A0A3B3IS95;A8MW50;F5H793;C9J7H8 A0A5F9ZHM4 LDHB L-lactate dehydrogenase B chain;L-lactate dehydrogenase 0 0 ;; ;; 223.36 7.92E-32 560440000 6109.27 5185.05 4961.83 5225.53 5172.83 5387.8 5247.37 4532.09 5734.59 6581.293 FALSE FALSE TRUE 5393.150632 5344.795245 5230.081539 5438.6497 4791.240637 5285.036692 5449.762819 5048.004806 5498.207773 6542.147177 0.824370117 0.816978753 0.799444188 0.831324877 0.732365156 0.807844359 0.833023573 0.771612847 0.840428628 1 12.6755485 -9.084499879 0.468148133 1.039925333 0.791399379 0.268700086 0.056340438 0.35899617 0.117128961 0.04167442 0.007868933 8.23E-10 9.084499879 -0.248525954 QQS(ph)LPPPK ddPTM_HeLa_CUDC101_4h_R1 1 QQSLPPPK 8 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 QQS(1)LPPPK 85.533 0.035225 31615000 4314.9 2889.3 2848.5 2687.9 2241.6 2414.8 3433.9 8260 2680.5 3172.9 TRUE FALSE FALSE 3809.113963 2978.315908 3002.498526 2797.52418 2076.241634 2368.741713 3566.346673 9200.285012 2570.008655 3154.02745 1.207698419 0.944289787 0.951957005 0.886968875 0.658282677 0.751021274 1.130727849 2.91699586 0.814833953 1 11.6229795 -4.26363316 4.875074059 1.011252114 3.015334184 0.922882804 0.171340496 0.038600124 2.699936064 0.02743108 0.260411413 5.45E-05 4.26363316 2.00408207 up GPHHLDNS(ph)SPGPGSEAR ddPTM_HeLa_CUDC101_4h_R1 1 GPHHLDNSSPGPGSEAR 17 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 1 0 GPHHLDNS(0.5)S(0.5)PGPGSEAR 163.53 1.68E-05 8763900 3466.8 2361.6 2474.3 2595.7 3193.6 3173.5 2640.7 1231.1 2584.9 3264.5 TRUE FALSE FALSE 3060.426959 2434.358097 2608.068142 2701.563866 2958.014491 3112.970775 2742.552684 1371.243448 2478.349328 3245.082609 0.94309678 0.750168298 0.803698536 0.832510044 0.911537501 0.959288607 0.845141099 0.422560413 0.763724572 1 11.66403949 -4.263490554 3.012851359 0.929203751 0.341351306 0.62366426 0.095489178 0.157007003 2.084765618 0.013624753 0.220060796 5.45E-05 4.263490554 -0.587852445 GLS(ph)EDTTEETLKESFDGSVR ddPTM_HeLa_CUDC101_4h_R1 1 GLSEDTTEETLKESFDGSVR 20 1 P19338;H7BY16 P19338 NCL Nucleolin 1 0 GLS(0.599)EDT(0.319)T(0.079)EET(0.003)LKES(0.001)FDGSVR 53.96 0.023828 7038500 2116.5 2089.6 1989.7 1687.4 1984.5 2227.4 2442.2 3565.4 2496.2 2863.6 TRUE FALSE FALSE 1868.407078 2153.978099 2097.269201 1756.219466 1838.107389 2184.916056 2536.396472 3971.270724 2393.305579 2846.56718 0.65637203 0.756693225 0.73677137 0.616960484 0.645727739 0.767561739 0.891036927 1.39510873 0.840769049 1 11.47500743 -4.263308314 2.964533737 0.788652622 1.495194735 0.751427438 0.109178659 0.214693904 2.715412493 0.021682876 0.358043456 5.45E-05 4.263308314 0.706542112 LEKVPDS(ph)PENELK ddPTM_HeLa_CUDC101_4h_R1 1 LEKVPDSPENELK 13 1 A0A2R8Y549;Q8NI35-4;Q8NI35-3;Q8NI35-2;Q8NI35;A0A0U1RR46;A0A0X1KG69;A0A087WUZ6 A0A2R8Y549 INADL InaD-like protein 1 0 LEKVPDS(1)PENELK 68.261 0.031492 19793000 5011.7 4727 5438.7 4933.7 5189 4813.1 5096.6 6278.8 5447.8 4922.7 TRUE FALSE FALSE 4424.236123 4872.633267 5732.732573 5134.917611 4806.217808 4721.298137 5293.177569 6993.553212 5223.239378 4893.419561 0.904119516 0.995752195 1.17151871 1.049351593 0.982179792 0.964825942 1.081692976 1.429175063 1.067400682 1 12.25662727 -4.263296957 2.486838438 0.981517125 1.527963708 0.718711547 0.074306999 0.20524755 1.565076585 0.011470424 0.236550479 5.45E-05 4.263296957 0.546446583 SLDDDLDGVPLDATEDSK ddPTM_HeLa_CUDC101_4h_R1 4 SLDDDLDGVPLDATEDSK 18 0 O15042-2;O15042;E7ET15;O15042-3;H7C4V2 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 0 0 ;;; ;;; 251.84 9.21E-56 46776700 15170.1 13010.3 11800.4 11798.5 12182.2 11956.1 11874.8 10408.3 13285.8 15151.5 FALSE FALSE TRUE 13391.88387 13411.13192 12438.36532 12279.69383 11283.54338 11728.05731 12332.81501 11593.1388 12738.1537 15061.3782 0.889153947 0.890431921 0.825845095 0.815310104 0.749170708 0.778684205 0.818837084 0.769726292 0.845749541 1 13.87856617 -7.58318827 0.366025199 1.00936922 0.762001555 0.45875927 0.051376886 0.22705676 0.088561829 0.02050335 0.017508295 2.61E-08 7.58318827 -0.247367665 NNS(ph)FTAPSTVGK ddPTM_HeLa_CUDC101_4h_R1 1 NNSFTAPSTVGK 12 0 O95453;O95453-3;O95453-2;A0A494C0W0;A0A494C0K5;A0A494C0Q6;O95453-4 O95453 PARN Poly(A)-specific ribonuclease PARN 1 0 NNS(0.941)FT(0.059)APSTVGK 112.02 0.0052453 7230100 1843.2 1293.1 1460.2 1295.8 1161.9 1303 1858.2 4687.4 1319.2 1660.3 TRUE FALSE FALSE 1627.14289 1332.938878 1539.142829 1348.648325 1076.188952 1278.147446 1929.871396 5220.994669 1264.822018 1650.424462 0.985893585 0.807633981 0.932573931 0.817152409 0.652067984 0.774435593 1.169318222 3.163425403 0.766361652 1 10.68862139 -4.263245362 3.768178468 0.927399531 3.390539719 0.966973499 0.127167409 0.034751438 0.939166939 0.019308416 0.236529858 5.45E-05 4.263245362 2.463140187 up SQT(ph)PPGVATPPIPK ddPTM_HeLa_CUDC101_4h_R1 4 SQTPPGVATPPIPK 14 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 0 S(0.051)QT(0.949)PPGVATPPIPK;S(0.043)QT(0.956)PPGVAT(0.001)PPIPK;SQT(0.999)PPGVATPPIPK;S(0.058)QT(0.942)PPGVATPPIPK ;;; 162.79 0.00015974 293592000 21685.1 20305.6 18945.4 18126.1 21154.4 19329.9 19360 21224.3 20884.7 21191.1 TRUE FALSE FALSE 19143.20545 20931.19147 19969.64563 18865.36071 19593.88206 18961.21436 20106.72169 23640.38852 20023.82383 21065.05439 0.908766011 0.993645261 0.947998769 0.895576169 0.930160525 0.900126532 0.954506042 1.12225623 0.950570715 1 14.36256402 -4.263192085 6.026061493 0.948022539 1.126751678 0.711668802 0.034202377 0.067608361 11.95085358 0.005895497 0.049437061 5.46E-05 4.263192085 0.178729139 SLDLFNCEVTNLNDYR ddPTM_HeLa_CUDC101_4h_R1 2 SLDLFNCEVTNLNDYR 16 0 P39687;H0YN26;Q92688-2;Q92688 P39687 ANP32A;ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member A;Acidic leucine-rich nuclear phosphoprotein 32 family member B 0 0 ; ; 226.88 4.09E-32 34537000 2688.34 2271.21 2466.07 2100.06 2345.6 2291.51 2154.54 2124.94 2617.75 1312.63 FALSE FALSE TRUE 2373.21686 2341.183288 2599.393204 2185.709524 2172.569761 2247.803265 2237.64133 2366.83458 2509.845237 1304.822418 1.81880448 1.794254341 1.992143273 1.675101143 1.665030988 1.722689029 1.714901046 1.813913178 1.923514803 1 10.34963776 -9.174783057 0.786535393 0.966980404 1.775542292 0 0.297226167 0.167457891 0.175624 0.084136921 0.020584208 6.69E-10 9.174783057 0.808561888 SLDLFNCEVTNLNDYRENVFK ddPTM_HeLa_CUDC101_4h_R1 2 SLDLFNCEVTNLNDYRENVFK 21 1 P39687;H0YN26 P39687 ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 0 ; ; 129.12 5.89E-07 27958000 2131.71 2326.87 1973.89 2354.3 2595.8 2390.8 2621.7 2318.3 2586.5 1695.01 FALSE FALSE TRUE 1881.834185 2398.558107 2080.604464 2450.31853 2404.313006 2345.199473 2722.819847 2582.205901 2479.883375 1684.928005 1.11686326 1.423537445 1.234832858 1.454257109 1.426952961 1.391869247 1.615985869 1.532531891 1.471803761 1 10.71847123 -6.807835905 0.43112582 0.991077976 1.577741078 0.147447027 0.167764961 0.255643874 0.110190968 0.032430737 0.057627978 1.56E-07 6.807835905 0.586663101 S(ph)VEEPTQPGGTGLSDSR ddPTM_HeLa_CUDC101_4h_R1 2 SVEEPTQPGGTGLSDSR 17 0 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 0 S(1)VEEPTQPGGTGLSDSR;S(0.999)VEEPT(0.001)QPGGTGLSDSR ; 237.81 1.23E-43 50755000 4050.1 3158.5 2845.3 3051.5 3131 2881.82 2424.49 1429.16 3731.9 3302.1 TRUE FALSE FALSE 3575.353418 3255.809641 2999.125525 3175.95336 2900.032368 2826.854085 2518.003391 1591.849798 3578.069502 3282.458962 1.089230196 0.991881293 0.913682565 0.967553105 0.883493869 0.86120013 0.767108872 0.484956496 1.09005765 1 11.68056126 -3.916909124 0.554089399 1.03521714 7.28E-17 0.910673252 0.050595721 1.125805065 0.179218205 0.010622239 0.815218595 0.000121085 3.916909124 -1.03521714 down RVNDAEPGS(ph)PEAPQGK ddPTM_HeLa_CUDC101_4h_R1 2 RVNDAEPGSPEAPQGK 16 1 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 0 RVNDAEPGS(1)PEAPQGK;RVNDAEPGS(1)PEAPQGK ; 158.15 4.15E-05 167643000 12442.9 10125.6 10263.5 10007.3 11758.3 10787.3 10046.1 8613.3 10239.7 9959.9 TRUE FALSE FALSE 10984.36212 10437.55773 10818.37586 10415.44095 10890.91363 10581.55023 10433.58144 9593.803256 9817.615232 9900.658072 1.10945778 1.054228684 1.092692605 1.051994814 1.100019166 1.068772414 1.053827065 0.969006624 0.991612392 1 13.27330871 -4.263176449 4.572333929 1.060259844 0.963313145 0.34454287 0.036844249 0.190889387 10.36787888 0.005875915 0.059100079 5.46E-05 4.263176449 -0.096946699 TLQTDSIDSFETQRT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 TLQTDSIDSFETQRTPR 17 1 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 0 TLQTDSIDSFET(0.001)QRT(0.999)PR;TLQTDSIDSFET(0.001)QRT(0.999)PR;TLQTDSIDSFET(0.001)QRT(0.999)PR ;; 110.22 0.0012405 80373300 7250 6090.9 5938.9 6014.8 7754.7 6619.4 6008.9 4298.4 5483.3 6185.9 TRUE FALSE FALSE 6400.16599 6278.55341 6259.974898 6260.109542 7182.651231 6493.145974 6240.665286 4787.712481 5257.276053 6149.105992 1.040828699 1.021051421 1.018030085 1.018051982 1.16808057 1.055949594 1.014889855 0.778603018 0.854965919 1 12.58616096 -4.263118184 4.616164585 1.032324214 0.763177206 0.500582993 0.072182683 0.077280107 4.354995079 0.006707171 0.066944947 5.46E-05 4.263118184 -0.269147008 SLS(ph)VPDSGR ddPTM_HeLa_CUDC101_4h_R1 1 SLSVPDSGR 9 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 0 S(0.001)LS(0.997)VPDS(0.001)GR 95.483 0.021977 45505000 3634.8 1807.4 2079.9 1881 2246.1 2091.7 2554.9 5081.2 2320.6 2320.6 TRUE FALSE FALSE 3208.734254 1863.083852 2192.345685 1957.71531 2080.409678 2051.804308 2653.443349 5659.623269 2224.943886 2306.796968 1.390991188 0.807649688 0.950385195 0.84867257 0.901860765 0.889460293 1.150271734 2.45345531 0.964516564 1 11.17167532 -4.262997189 5.280717173 1.082606808 2.509237313 0.84751929 0.182706616 0.056710657 5.528784216 0.032346148 0.292258813 5.46E-05 4.262997189 1.426630506 up VETLSPESALQGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 VETLSPESALQGSPR 15 0 Q99958 Q99958 FOXC2 Forkhead box protein C2 1 0 VETLSPESALQGS(1)PR;VETLSPESALQGS(1)PR ; 169.15 8.22E-07 124960000 2822.5 2551.7 2143.1 2536.5 2856.2 2699 2680.7 2962.1 2692.1 2987 TRUE FALSE FALSE 2491.650829 2630.314852 2258.962469 2639.949434 2645.503816 2647.521072 2784.095497 3299.293491 2581.130499 2969.233191 0.83915633 0.885856611 0.760789848 0.889101416 0.890972061 0.891651447 0.937647978 1.111160114 0.869291946 1 11.53587469 -4.262960612 2.935730077 0.901641383 1.146472422 0.560585514 0.059263571 0.314727037 3.864463378 0.010788384 0.180823715 5.46E-05 4.262960612 0.244831039 SEDES(ph)ETEDEEEK ddPTM_HeLa_CUDC101_4h_R1 2 SEDESETEDEEEK 13 0 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 1 0 SEDES(0.943)ET(0.057)EDEEEK;SEDES(0.878)ET(0.122)EDEEEK ; 282.12 4.41E-103 15137500 4402.5 3867.5 3695.1 3742.3 2883.7 3080.3 2714.1 1916.18 4618.4 4534.8 TRUE FALSE FALSE 3886.445624 3986.653091 3894.868283 3894.92717 2670.975196 3021.54841 2818.783746 2134.310186 4428.027597 4507.826808 0.862155045 0.884384707 0.864023497 0.86403656 0.59251948 0.670289374 0.625308794 0.473467655 0.982297632 1 12.13821637 -3.911031179 0.263712545 0.98842151 2.25E-19 0.888471836 0.056490775 2.68410704 0.124652275 0.035276726 0.88845873 0.000122735 3.911031179 -0.98842151 down GLGTDEDTLIEILAS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 GLGTDEDTLIEILASR 16 0 P04083;Q5T3N1 P04083 ANXA1 Annexin A1;Annexin 1 0 GLGTDEDTLIEILAS(1)R;GLGTDEDTLIEILAS(1)R ; 117.48 0.00068195 17939800 1642.69 1706.48 1117.59 1370.06 1468.14 1398.62 1427.7 1620.3 1371.01 1558.07 TRUE FALSE FALSE 1450.136368 1759.054626 1178.010296 1425.936969 1359.838237 1371.943654 1482.766867 1804.748403 1314.496388 1548.80253 0.936295196 1.13575139 0.760594248 0.920670609 0.877993295 0.88580928 0.957363407 1.165254038 0.848717872 1 10.5969375 -4.262900157 6.360953454 0.95064553 1.169796028 0.329354451 0.096850253 0.107122349 24.58655403 0.012308496 0.101296642 5.46E-05 4.262900157 0.219150499 S(ph)AILVPSEK ddPTM_HeLa_CUDC101_4h_R1 1 SAILVPSEK 9 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 S(0.998)AILVPS(0.002)EK 91.701 0.026275 13016000 2846.2 3026.4 3084.9 2657.4 4227 3185 2783.4 1635.2 2771.4 3039.9 TRUE FALSE FALSE 2512.572751 3119.639797 3251.679025 2765.780258 3915.182631 3124.251432 2890.75667 1821.344558 2657.161719 3021.81854 0.831477045 1.032371652 1.076066939 0.915270134 1.295637902 1.033897764 0.956628147 0.602731281 0.879325374 1 11.56120131 -4.262802058 5.716004304 0.971247156 0.591180729 0.464578954 0.124833114 0.111123683 15.36123352 0.018976927 0.164139581 5.46E-05 4.262802058 -0.380066427 SLEDLQDEYDFK ddPTM_HeLa_CUDC101_4h_R1 2 SLEDLQDEYDFK 12 0 D2KFR9;A0A669KB17;E7EPD2;A0A669KB75;A0A669KB52;J3KPM9;A0A669KBI6;A0A669KB68;A0A669KB56;A0A669KBA4;A0A669KB53;P42224-2;P42224 D2KFR9 STAT1 Signal transducer and activator of transcription;Signal transducer and activator of transcription 1-alpha/beta 0 0 ; ; 151.55 1.44E-07 11675000 3625.8 3016.85 3257.5 3295 3557.1 3786.7 3487.6 2954.33 3226.7 2972.1 FALSE FALSE TRUE 3200.78922 3109.795573 3433.610303 3429.384342 3294.69982 3714.475007 3622.1179 3290.638985 3093.69406 2954.421817 1.08338938 1.052590241 1.16219366 1.160763274 1.115175836 1.257259537 1.225998901 1.113801342 1.04714027 1 11.52866011 -7.03104339 0.40319666 1.004744962 1.208656749 0.623605797 0.047180061 0.446290437 0.185357419 0.023361561 0.033742704 9.31E-08 7.03104339 0.203911788 SLEDQVEMLR ddPTM_HeLa_CUDC101_4h_R1 2 SLEDQVEMLR 10 0 K7ELL7;P14314-2;P14314 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 0 ; ; 182.53 2.06E-10 39306000 4406.8 3656.2 3589.1 3403.1 4390.1 3725.9 3731.8 3984.4 3746.8 3709 FALSE FALSE TRUE 3890.241584 3768.843188 3783.137602 3541.893127 4066.251069 3654.834665 3875.736776 4437.967991 3592.355318 3686.938703 1.055141378 1.022214767 1.026091809 0.960659618 1.102880031 0.991292495 1.051207272 1.203699966 0.974346364 1 11.84820772 -4.274589873 3.644924335 1.025104242 1.221187086 0.664076644 0.039385775 0.109115415 2.653475726 0.004864907 0.056799186 5.31E-05 4.274589873 0.196082845 TDESSPVLS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 TDESSPVLSPR 11 0 Q8NA72-3;Q8NA72 Q8NA72-3 POC5 Centrosomal protein POC5 1 0 TDESSPVLS(1)PR;TDESSPVLS(1)PR ; 146.5 0.00096845 15114600 3761.1 3446.4 2908 3264.3 3759.3 3365.7 3476.9 4325.2 3799.1 4042.4 TRUE FALSE FALSE 3320.229559 3552.579499 3065.215276 3397.432264 3481.983929 3301.50488 3611.005198 4817.563285 3642.49949 4018.355625 0.826265734 0.884087878 0.762803386 0.845478245 0.866519605 0.821605947 0.898627582 1.198889231 0.906465189 1 11.97238953 -4.262761168 6.030009586 0.887883814 1.206953613 0.70901883 0.062470864 0.075309751 13.34122721 0.011658212 0.09830296 5.46E-05 4.262761168 0.319069799 APS(ph)LTDLVK ddPTM_HeLa_CUDC101_4h_R1 2 APSLTDLVK 9 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 APS(0.986)LT(0.014)DLVK;APS(0.977)LT(0.023)DLVK ; 100.55 0.017223 116028000 7900.3 7295.7 5842 6343.6 6960.1 6995.9 7319 10679.1 6884.9 7916.2 TRUE FALSE FALSE 6974.23881 7520.471869 6157.836191 6602.319427 6446.667289 6862.464863 7601.296282 11894.76558 6601.101508 7869.11409 0.886280048 0.955694858 0.782532331 0.839016864 0.819236729 0.872075914 0.965965952 1.5115762 0.838862092 1 12.94198551 -4.262758328 4.123662919 0.91351707 1.560800361 0.877038841 0.069957687 0.06615196 2.446669907 0.01133179 0.126307711 5.46E-05 4.262758328 0.647283291 KLDVEEPDSANS(ph)SFYSTR ddPTM_HeLa_CUDC101_4h_R1 1 KLDVEEPDSANSSFYSTR 18 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 KLDVEEPDSANS(0.488)S(0.488)FYS(0.023)T(0.001)R 188.32 1.16E-11 29080000 4691.1 3671.1 4092.8 3776.7 4128.2 4184 3675.3 2360.7 3500.5 3478.9 TRUE FALSE FALSE 4141.216369 3784.20224 4314.069148 3930.73015 3823.670911 4104.197171 3817.057552 2629.432546 3356.207908 3458.207348 1.197503779 1.094267017 1.247487127 1.136638077 1.105680061 1.186799043 1.103767695 0.760345544 0.970505112 1 11.75580866 -4.262710455 5.985596383 1.116175873 0.750859075 0.638149916 0.080360873 0.068240713 11.67274958 0.011958825 0.101246954 5.46E-05 4.262710455 -0.365316798 TDS(ph)DSDLQLYK ddPTM_HeLa_CUDC101_4h_R1 2 TDSDSDLQLYK 11 0 E9PIJ1;A0A590UK85;A0A590UJY6;A0A5F9UK94;H0Y360;Q01433-3;Q01433-5;Q01433-2;Q01433-4;Q01433 E9PIJ1 AMPD2 AMP deaminase 2 1 0 T(0.023)DS(0.977)DSDLQLYK;T(0.001)DS(0.998)DS(0.002)DLQLYK ; 188.96 5.37E-11 24291000 4125.5 2993.99 2951.76 3155.68 3169.71 3277.44 3828.2 7850.1 3841.7 4245.3 TRUE FALSE FALSE 3641.915144 3086.231283 3111.341074 3284.38227 2935.886808 3214.928293 3975.854956 8743.723653 3683.3435 4220.048767 0.863003094 0.731325976 0.737276095 0.778280644 0.695699735 0.761822545 0.942134837 2.071948486 0.872820127 1 12.04304396 -4.262674326 4.754719681 0.867102512 2.139689691 0.932232935 0.100730583 0.042957599 2.717930562 0.018434778 0.180364822 5.46E-05 4.262674326 1.272587179 up DAHDVS(ph)PTSTDTEAQLTVER ddPTM_HeLa_CUDC101_4h_R1 8 DAHDVSPTSTDTEAQLTVER 20 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 DAHDVS(1)PTSTDTEAQLTVER;DAHDVS(1)PTSTDTEAQLTVER;DAHDVS(0.998)PT(0.001)S(0.001)TDTEAQLTVER;DAHDVS(0.982)PT(0.015)S(0.002)TDTEAQLTVER;DAHDVS(0.506)PT(0.101)S(0.021)T(0.021)DT(0.346)EAQLT(0.005)VER;DAHDVS(0.998)PT(0.002)STDTEAQLTVER;DAHDVS(0.987)PT(0.012)S(0.001)TDTEAQLTVER;DAHDVS(0.998)PT(0.001)STDTEAQLTVER ;;;;;;; 252.58 3.68E-57 1592890200 20219.7 19656.2 19870.18 18136.39 21028.87 20013.25 19443.73 20636.36 22121.53 22574.8 TRUE FALSE FALSE 17849.57742 20261.78422 20944.42203 18876.07038 19477.61216 19631.5306 20193.68118 22985.51981 21209.67117 22440.52409 0.795417137 0.902910473 0.933330343 0.841159962 0.86796601 0.874824961 0.899875649 1.02428623 0.945150438 1 14.45381875 -4.262654292 5.702578902 0.894815614 1.028387209 0.339453127 0.053876502 0.175334265 23.97432885 0.010465508 0.090805205 5.46E-05 4.262654292 0.133571595 SLETENRR ddPTM_HeLa_CUDC101_4h_R1 1 SLETENRR 8 1 P05783;F8VZY9;CON__P05784 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 90.37 0.030158 660040 414.21 0 470.62 627.63 212.65 214.79 298.23 140.73 567.1 529.13 FALSE FALSE TRUE 365.6569317 0 496.0631407 653.2274642 196.9632332 210.6932386 309.732831 156.7501343 543.723898 525.9827112 0.695188119 0 0.943116818 1.241918128 0.374467124 0.400570654 0.588865041 0.298013853 1.033729601 1 9.038871569 -13.52287875 0.075853279 2.529803368 0.071149952 0.245237933 0.324572029 230.0537792 1.346306688 60.26138974 7.438042137 3.00E-14 13.52287875 -2.458653416 SLFFPDEAINK(ac)HPR ddPTM_HeLa_CUDC101_4h_R1 1 SLFFPDEAINKHPR 14 1 A0A0C4DGB2;P48506;B4E2I4;A0A2R8YEL6 A0A0C4DGB2 GCLC Glutamate--cysteine ligase catalytic subunit 0 1 SLFFPDEAINK(1)HPR 84.297 0.033817 417940 0 0 0 0 0 101.12 182.34 0 106.34 0 FALSE TRUE FALSE 0 0 0 0 0 99.19130448 189.3729149 0 101.9566202 0 0 QLSST(ph)SPLAPYPTSQMVSSDR ddPTM_HeLa_CUDC101_4h_R1 1 QLSSTSPLAPYPTSQMVSSDR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 QLS(0.002)S(0.005)T(0.976)S(0.017)PLAPYPTSQMVSSDR 192.46 4.10E-26 0 923.5 218.99 418.52 401.92 239.08 426.99 545.05 1320.6 515.85 419.89 TRUE FALSE FALSE 815.2487299 225.7368223 441.1464572 418.3120348 221.4435447 418.8458772 566.0727611 1470.931766 494.5864447 417.3924756 1.953194601 0.540826286 1.056910421 1.002203104 0.530540337 1.003482098 1.356212184 3.524097467 1.184943365 1 8.705260783 -4.262597832 5.176221404 1.242372912 3.623589291 0.750687321 0.414202243 0.079431862 7.111327336 0.072980647 0.671262674 5.46E-05 4.262597832 2.381216379 EQFEGLGST(ph)PDAK ddPTM_HeLa_CUDC101_4h_R1 1 EQFEGLGSTPDAK 13 0 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 0 EQFEGLGS(0.075)T(0.925)PDAK 105.58 0.028592 28272000 6980.4 5167.6 5804.2 5604.9 5685 6215.6 6461 9526.5 6947.2 7634 TRUE FALSE FALSE 6162.168094 5326.807631 6117.992609 5833.492048 5265.628876 6097.047786 6710.202934 10610.95825 6660.833476 7588.592628 0.812030425 0.701949346 0.806209123 0.768718567 0.693887409 0.803449083 0.884248669 1.39827749 0.877742923 1 12.88961663 -4.262579234 5.031722788 0.855147803 1.424131846 0.773760424 0.092402468 0.081340149 6.470743039 0.017079013 0.16022887 5.46E-05 4.262579234 0.568984043 SLGDDISSETSGDFR ddPTM_HeLa_CUDC101_4h_R1 2 SLGDDISSETSGDFR 15 0 D6RA82;P12429;D6RFG5 D6RA82 ANXA3 Annexin;Annexin A3 0 0 ; ; 289.59 6.66E-103 24271000 3085.8 2704.1 1985.64 1995.55 2375.12 2555.7 2157.13 2304.1 2401.37 2492.48 FALSE FALSE TRUE 2724.087202 2787.410116 2092.989705 2076.937155 2199.91213 2506.954281 2240.331227 2566.389431 2302.384512 2477.654618 1.09946204 1.125019644 0.844746354 0.838267424 0.887901047 1.011825564 0.904214498 1.035814036 0.92925967 1 11.27475938 -6.762216099 24.99991548 1.054134391 0.918659787 0.346545173 0.078159747 14.71763171 473717.004 0.011905906 0.016169003 1.73E-07 6.762216099 -0.135474604 SLGDDISSETSGDFRK ddPTM_HeLa_CUDC101_4h_R1 3 SLGDDISSETSGDFRK 16 1 D6RA82;P12429;D6RFG5 D6RA82 ANXA3 Annexin;Annexin A3 0 0 ;; ;; 120.21 0.00057951 39734300 2655.79 2763.32 2614.27 2456.42 2966.77 2627.65 2682.76 2791.91 2620.55 3032.29 FALSE FALSE TRUE 2344.482322 2848.454614 2755.605344 2556.603425 2747.917288 2577.531954 2786.234952 3109.729749 2512.52982 3014.253804 0.777798578 0.944994947 0.914191546 0.848171253 0.911640979 0.85511444 0.924353134 1.031674819 0.833549523 1 11.55758518 -4.303386408 3.364848822 0.893496264 1.043848596 0.34704006 0.059473631 0.341944823 6.449570423 0.011287572 0.123509486 4.97E-05 4.303386408 0.150352332 SLGDVDDGDTVTDFMAQER ddPTM_HeLa_CUDC101_4h_R1 1 SLGDVDDGDTVTDFMAQER 19 0 D6RF75;Q969S9-5;Q969S9-4;Q969S9-2;Q969S9-3;Q969S9 D6RF75 GFM2 "Ribosome-releasing factor 2, mitochondrial" 0 0 113.99 0.00025558 0 277.89 257.66 344.47 289.66 273.06 206.17 298.6 372.73 350.2 286.65 FALSE FALSE TRUE 245.3161555 265.5981992 363.0930902 301.4735868 252.9169078 202.2376508 310.117102 415.1600766 335.7646078 284.9449931 0.860924605 0.932103408 1.274256783 1.058006261 0.887599059 0.709742777 1.08834024 1.456983231 1.17834886 1 8.154539632 -6.913729038 24.99885997 0.932281276 1.057285158 0.000786561 0.206786653 47.38231601 13722.37503 0.032256327 0.042393122 1.22E-07 6.913729038 0.125003883 LQQGAGLESPQGQPEPGAAS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 2 LQQGAGLESPQGQPEPGAASPQR 23 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 LQQGAGLESPQGQPEPGAAS(1)PQR;LQQGAGLES(0.001)PQGQPEPGAAS(0.999)PQR ; 115.54 2.06E-06 133645000 5540.1 5085 5338.9 5216.5 5474.3 5184 5101.2 5779.4 5749.6 5317.3 TRUE FALSE FALSE 4890.697876 5241.662823 5627.537083 5429.251418 5070.471795 5085.123837 5297.954993 6437.303535 5512.599054 5285.672463 0.925274487 0.991673786 1.064677602 1.027163801 0.959286038 0.962058068 1.00232374 1.217877873 1.042932398 1 12.36787131 -4.262567491 3.791881221 0.977065571 1.242154486 0.687785582 0.043012161 0.105676287 2.915520282 0.006361651 0.077819634 5.46E-05 4.262567491 0.265088915 PCS(ph)EETPAISPS(ph)KR ddPTM_HeLa_CUDC101_4h_R1 1 PCSEETPAISPSKR 14 1 P33316-2;H0YNJ9 P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 2 0 PCS(0.999)EET(0.002)PAIS(0.107)PS(0.893)KR 93.115 0.0060857 35882000 8058.5 8143.7 7894.8 8029.6 8102.7 7139.9 7412 10788 8238.1 7366.8 TRUE FALSE FALSE 7113.894846 8394.597744 8321.616768 8357.081795 7504.979964 7003.718303 7697.883323 12016.06231 7898.522031 7322.981946 0.97144782 1.146335988 1.136369969 1.141212945 1.024852993 0.956402509 1.05119518 1.640870127 1.078593678 1 12.83821552 -4.262556137 5.154382276 1.019996646 1.668319906 0.844868606 0.073809157 0.046085602 4.05300753 0.011447476 0.10564301 5.46E-05 4.262556137 0.648323259 SLGEQDQMTLR ddPTM_HeLa_CUDC101_4h_R1 1 SLGEQDQMTLR 11 0 P48681 P48681 NES Nestin 0 0 113.62 0.032968 19484000 1711.1 1381.3 1194.9 1060.7 1165.6 1197.7 1172.5 1258.3 1110.8 1093.4 FALSE FALSE TRUE 1510.527452 1423.856216 1259.499908 1103.959931 1079.61601 1174.855868 1217.723718 1401.539786 1065.012354 1086.896408 1.389762116 1.310020168 1.158804003 1.015699309 0.993301663 1.080927179 1.120367782 1.289487917 0.979865556 1 10.08599873 -6.514647468 23.92160374 1.200347683 1.093422564 0.038305746 0.138580787 457.6085705 1329895.852 0.026407031 0.038413362 3.06E-07 6.514647468 -0.106925119 TPGHPPPPEIPS(ph)ELGACDFEKPESPR ddPTM_HeLa_CUDC101_4h_R1 1 TPGHPPPPEIPSELGACDFEKPESPR 26 1 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 TPGHPPPPEIPS(0.875)ELGACDFEKPES(0.125)PR 55.302 0.00407 68170000 4046 2861 2941.3 2998.8 3641.5 3430.8 3028.8 1542.6 3434.6 3027.8 TRUE FALSE FALSE 3571.734013 2949.144019 3100.315575 3121.104026 3372.8738 3365.363206 3145.621831 1718.203349 3293.024334 3009.790511 1.186705188 0.979850261 1.030076865 1.036983808 1.120634073 1.118138686 1.045129825 0.570871409 1.094104165 1 11.55544736 -4.262528713 4.636927276 1.078462319 0.540165667 0.863143739 0.05939364 0.061512089 3.526440549 0.010698282 0.107030125 5.46E-05 4.262528713 -0.538296652 QPLLLS(ph)EDEEDTKR ddPTM_HeLa_CUDC101_4h_R1 11 QPLLLSEDEEDTKR 14 1 Q99613-2;Q99613;B5ME19;H3BPE4 Q99613-2 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 1 0 QPLLLS(0.998)EDEEDT(0.002)KR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(0.998)EDEEDT(0.002)KR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(0.971)EDEEDT(0.029)KR;QPLLLS(1)EDEEDTKR;QPLLLS(0.855)EDEEDT(0.145)KR ;;;;;;;;;; 235.35 3.99E-43 15006042300 32239.1 31939.8 25579.36 27356.6 29928.4 29280.3 28474.3 31250.2 28432.6 29975.2 TRUE FALSE FALSE 28460.08157 32923.82738 26962.25757 28472.32039 27720.64156 28721.82706 29572.56329 34807.59645 27260.59619 29796.90618 0.955135456 1.104941137 0.904867687 0.955546197 0.930319456 0.963919774 0.992470934 1.168161427 0.91488009 1 14.86287492 -4.262509866 4.168814613 0.97621303 1.183576252 0.54908669 0.053964855 0.12018015 4.622010003 0.006709873 0.074134665 5.46E-05 4.262509866 0.207363223 SNSGLGGEVSGVMS(ph)KPNVDPQPWFQDGPK ddPTM_HeLa_CUDC101_4h_R1 1 SNSGLGGEVSGVMSKPNVDPQPWFQDGPK 29 1 C9JRJ5;Q9UGP4 C9JRJ5 LIMD1 LIM domain-containing protein 1 1 0 S(0.059)NS(0.052)GLGGEVS(0.232)GVMS(0.657)KPNVDPQPWFQDGPK 41.455 0.034172 17789000 1081.4 904.96 778.6 876.08 858.9 853.53 961.51 1839.8 896.35 957.87 TRUE FALSE FALSE 954.6399313 932.840745 820.6934711 911.8103291 795.5406582 837.2503373 998.5957628 2049.235395 859.4020736 952.1725466 1.002591321 0.979697165 0.861916755 0.957610396 0.83550052 0.879305269 1.048755046 2.152168115 0.902569683 1 9.895079223 -4.262504435 4.56423052 0.968008698 2.227044935 0.968072965 0.065986841 0.025303675 1.364552454 0.010023219 0.101672585 5.46E-05 4.262504435 1.259036237 up GESLDNLDS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 GESLDNLDSPR 11 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 GESLDNLDS(1)PR;GESLDNLDS(1)PR ; 165.51 4.93E-07 16238000 2374.22 2324.9 2407.35 2629.2 2321.45 2461.51 2194.92 1260.04 2397.39 2483.05 TRUE FALSE FALSE 2095.917531 2396.527413 2537.498623 2736.43014 2150.201258 2414.560798 2279.5788 1403.47786 2298.568569 2468.280708 0.849140669 0.970929848 1.028042967 1.108638143 0.871133195 0.978235899 0.923549251 0.568605449 0.931242772 1 11.26929076 -4.26244099 4.597841092 0.948933285 0.545020231 0.726889931 0.072145573 0.090582361 5.024945814 0.011646244 0.117465981 5.46E-05 4.26244099 -0.403913054 S(ph)GPSPLS(ph)SPNGK ddPTM_HeLa_CUDC101_4h_R1 1 SGPSPLSSPNGK 12 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 2 0 S(0.682)GPS(0.318)PLS(0.705)S(0.294)PNGK 131.08 0.014717 78378000 6969.7 6215.3 5719.8 6052.8 6522.2 5602.6 5889.3 6760.2 6489.3 6092.7 TRUE FALSE FALSE 6152.722331 6406.786026 6029.029689 6299.659346 6041.0703 5495.73974 6116.452274 7529.753842 6221.808307 6056.460349 1.015894099 1.057843304 0.995470843 1.040155302 0.997458904 0.907417769 1.009905443 1.243259826 1.027301088 1 12.56425915 -4.262426885 7.257348077 1.005047983 1.246216216 0.779829147 0.037871604 0.034070574 15.50412683 0.00509583 0.040526108 5.46E-05 4.262426885 0.241168233 HCAPSPDRSPELSSS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 HCAPSPDRSPELSSSR 16 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 HCAPS(0.097)PDRS(0.01)PELSS(0.013)S(0.88)R 123.63 0.0026455 1555400 1005.7 658.28 641.15 666.77 770.77 710.79 741.21 1059.5 871.07 695.25 TRUE FALSE FALSE 887.8133705 678.5608265 675.8125084 693.9637626 713.9118327 697.232865 769.798718 1180.109197 835.1641259 691.1146221 1.284610891 0.981835436 0.97785879 1.00412253 1.03298615 1.008852718 1.113851007 1.707544826 1.208430699 1 9.432781193 -4.262426794 5.723108204 1.090753167 1.726911222 0.781351962 0.100915387 0.062982112 8.749907433 0.017941753 0.155842318 5.46E-05 4.262426794 0.636158055 SES(ph)ENWR ddPTM_HeLa_CUDC101_4h_R1 2 SESENWR 7 0 I1E4Y6;Q6Y7W6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;E7ESB6;C9JH78;C9IYH5 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 S(0.019)ES(0.981)ENWR;S(0.001)ES(0.999)ENWR ; 109.44 0.014301 65111000 7745.9 4172.1 4329.6 3930.3 4097.8 5068.2 6872.8 14551.3 3909.8 5222.1 TRUE FALSE FALSE 6837.937344 4300.637456 4563.671272 4090.594622 3795.513458 4971.532529 7137.886198 16207.76117 3748.636389 5191.038717 1.317258013 0.828473392 0.879144141 0.78801081 0.731166471 0.9577144 1.375040062 3.12225781 0.722136088 1 12.34180753 -4.262389258 3.059575086 1.045650693 3.448359239 0.908058475 0.207638723 0.090178243 1.25199636 0.032741536 0.522389495 5.47E-05 4.262389258 2.402708547 up SLGNILQAKPTSSPAK(ac)GPPQK ddPTM_HeLa_CUDC101_4h_R1 1 SLGNILQAKPTSSPAKGPPQK 21 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 0 1 SLGNILQAKPTSSPAK(1)GPPQK 115.56 1.32E-06 0 71.885 355.01 258.15 218.19 414.44 293.28 273.85 268.34 0 132.77 FALSE TRUE FALSE 63.45874927 365.9474373 272.1063699 227.0887313 383.8675869 287.6861726 284.4124862 298.8867409 0 131.9802781 0.480819939 2.772743341 2.06171993 1.720626252 2.908522336 2.179766376 2.154962016 2.264631846 0 1 7.044178553 -7.266523948 24.99933796 0.754831617 2.277481286 0.792472047 0.415911462 128.8750284 633639.7181 0.060685831 0.070528578 5.41E-08 7.266523948 1.522649669 LYSLLGIDLTAPS(ph)NNSSPRDS(ph)PCKENK ddPTM_HeLa_CUDC101_4h_R1 1 LYSLLGIDLTAPSNNSSPRDSPCKENK 27 2 A3KN83-4;A3KN83-3;A3KN83-2;A3KN83 A3KN83-4 SBNO1 Protein strawberry notch homolog 1 2 0 LYSLLGIDLT(0.078)APS(0.628)NNS(0.446)S(0.446)PRDS(0.402)PCKENK 56.298 0.029011 9796200 1858.6 1399 1144.1 1242 1372.4 1381.6 1233.2 729.07 1346.2 1033.4 TRUE FALSE FALSE 1640.737725 1442.101532 1205.953507 1292.654128 1271.160786 1355.248282 1280.764937 812.0643818 1290.709066 1027.253291 1.597208537 1.403842212 1.173959254 1.258359686 1.237436568 1.319293201 1.246785918 0.790520107 1.256466227 1 10.00457624 -4.262333896 4.288843085 1.285765263 0.753452485 0.50429456 0.144981609 0.201755899 8.605617003 0.030342208 0.326489201 5.47E-05 4.262333896 -0.532312778 LQPQEIS(ph)PPPTANLDR ddPTM_HeLa_CUDC101_4h_R1 2 LQPQEISPPPTANLDR 16 0 Q05397-5;Q05397;Q05397-7;Q05397-2;E7ESA6;H0YBP1;H0YB16;H0YBZ1;E9PEI4;Q05397-6;B4DWJ1 Q05397-5 PTK2 Focal adhesion kinase 1 1 0 LQPQEIS(0.905)PPPT(0.095)ANLDR;LQPQEIS(0.962)PPPT(0.038)ANLDR ; 175.19 3.92E-07 51861000 2246.81 2330.46 1943.91 2008.96 2138.39 1941.34 2034.66 2590.6 2484.1 2219.96 TRUE FALSE FALSE 1983.442338 2402.25871 2049.003655 2090.894072 1980.64523 1904.312174 2113.137518 2885.503432 2381.704347 2206.755579 0.898804723 1.088593015 0.928514093 0.947496901 0.897537203 0.862946577 0.957576606 1.307577268 1.079278724 1 11.10771113 -4.262321432 6.692044884 0.948969616 1.313855124 0.670100375 0.07215742 0.04298936 12.70701428 0.008718186 0.071073135 5.47E-05 4.262321432 0.364885507 VS(ph)LERLDLDLTADSQPPVFK ddPTM_HeLa_CUDC101_4h_R1 2 VSLERLDLDLTADSQPPVFK 20 1 Q13263-2;Q13263;M0R0K9 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 1 0 VS(1)LERLDLDLTADSQPPVFK;VS(1)LERLDLDLTADSQPPVFK ; 133.17 1.04E-05 66746000 8957 8670.7 8661.8 8625 10783.7 8944.3 8025.2 4660.1 10218.3 8401.9 TRUE FALSE FALSE 7907.074038 8937.83399 9130.083109 8976.76478 9988.207935 8773.70238 8334.734652 5190.586947 9797.097349 8351.925125 0.946736701 1.070152552 1.093171092 1.074813848 1.195916844 1.050500603 0.997941735 0.621483894 1.173034624 1 13.02789306 -4.262285665 5.199038735 1.016843616 0.604404899 0.676322433 0.086503653 0.075315435 6.867195669 0.012024001 0.110679643 5.47E-05 4.262285665 -0.412438717 SLGTADVHFER ddPTM_HeLa_CUDC101_4h_R1 2 SLGTADVHFER 11 0 E9PB61;Q86V81 E9PB61 ALYREF THO complex subunit 4 0 0 ; ; 158.3 0.00014155 50402000 15473.7 13987.6 14900.3 13075.3 17789.2 16245.2 16251.2 15234.9 15604.6 15610.6 FALSE FALSE TRUE 13659.89634 14418.54138 15705.85529 13608.56725 16476.92616 15935.34988 16878.01423 16969.17943 14961.37178 15517.74746 0.880275722 0.929164585 1.012122109 0.876967955 1.061811723 1.026911278 1.087658777 1.093533677 0.964145848 1 13.92163153 -5.737316361 23.0438167 0.942521134 1.066022822 0.650303845 0.044427764 56.03668967 53528.81828 0.007879549 0.015749386 1.83E-06 5.737316361 0.123501687 SGS(ph)MDPSGAHPSVR ddPTM_HeLa_CUDC101_4h_R1 2 SGSMDPSGAHPSVR 14 0 Q07666-2;Q07666;Q07666-3 Q07666-2 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 0 S(0.099)GS(0.901)MDPSGAHPSVR;S(0.015)GS(0.985)MDPSGAHPSVR ; 157.33 6.53E-05 4743700 3260.6 2256.5 2553.6 2290.99 3579.3 2851.1 2785.1 3024.1 3386.4 3081.5 TRUE FALSE FALSE 2878.397411 2326.02009 2691.65534 2384.426475 3315.26217 2796.720018 2892.52224 3368.35132 3246.811159 3063.171101 0.939678952 0.759350364 0.878715309 0.778417658 1.082297417 0.913014626 0.944290131 1.099628852 1.059950963 1 11.58081024 -4.262261742 6.269599632 0.939775771 1.103245588 0.199284736 0.10070582 0.162223427 34.59845561 0.013476115 0.1125583 5.47E-05 4.262261742 0.163469818 SLHDALCVVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 SLHDALCVVKR 11 1 P17987;F5H282;E7EQR6;E7ERF2;F5GZ03 P17987 TCP1 T-complex protein 1 subunit alpha 0 1 ; SLHDALCVVK(1)R;SLHDALCVVK(1)R 97.452 0.010752 6689700 1752.53 986.91 1380.37 969.69 1995.31 1478.27 1321.21 1707.25 1900.11 1144.07 FALSE TRUE FALSE 1547.10109 1017.315527 1454.996978 1009.23815 1848.119957 1450.074463 1372.169512 1901.596439 1821.786662 1137.265021 1.360369889 0.894528108 1.279382511 0.887425649 1.625056537 1.275054131 1.206552112 1.672078543 1.601901605 1 10.15135277 -1 0.388475506 1.140062512 7.537763721 0.144074638 0.256620697 63.65966868 0.764373644 0.055183828 312.4006199 0.1 1 6.397701209 LASVS(ph)ADAEVAR ddPTM_HeLa_CUDC101_4h_R1 1 LASVSADAEVAR 12 0 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 LAS(0.286)VS(0.714)ADAEVAR 137.95 0.0013134 9277800 933.63 706.84 1065.9 1050 1864 1757 2047.9 2557.3 737.29 862.52 TRUE FALSE FALSE 824.1913067 728.6169026 1123.525778 1092.823538 1726.496434 1723.488152 2126.888189 2848.412695 706.8985941 857.3896927 0.9612797 0.84980833 1.310402712 1.274593744 2.013665954 2.010157303 2.480655188 3.322191437 0.824477598 1 9.743807263 -4.262239823 0.50807543 0.946850291 4.890521495 0.957220162 0.162894044 0.52963244 0.091329932 0.032438703 1.240670067 5.47E-05 4.262239823 3.943671204 up LGGS(ph)AVISLEGKPL ddPTM_HeLa_CUDC101_4h_R1 2 LGGSAVISLEGKPL 14 1 P23528;G3V1A4;E9PK25 P23528 CFL1 Cofilin-1 1 0 LGGS(0.98)AVIS(0.02)LEGKPL;LGGS(0.707)AVIS(0.293)LEGKPL ; 136.14 0.0032257 94273000 4854 3933.7 3878.6 3851.9 4344.7 4075.3 4154.9 5006.3 3904.2 4577.8 TRUE FALSE FALSE 4285.021478 4054.892634 4088.288848 4008.997131 4024.200137 3997.570442 4315.155885 5576.196956 3743.267224 4550.571042 0.941644782 0.891073361 0.898412267 0.880987703 0.884328604 0.878476658 0.948266898 1.225384002 0.822592855 1 12.15183188 -4.262196092 6.784878459 0.941959253 1.230086277 0.707216584 0.057597133 0.049347254 15.64755709 0.008026592 0.065277061 5.47E-05 4.262196092 0.288127024 SLIEEGGDWDR ddPTM_HeLa_CUDC101_4h_R1 1 SLIEEGGDWDR 11 0 Q15008;Q15008-4;C9J0E9;Q15008-3;Q15008-2;H7C531 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 0 135.55 0.0091499 6854500 1336.8 1090.5 1055.3 1040.6 902.57 958.69 1043.3 1003.7 1206.2 1138.7 FALSE FALSE TRUE 1180.10233 1124.097012 1112.35271 1083.040166 835.9892093 940.4045855 1083.54043 1117.957151 1156.479925 1131.926962 1.042560492 0.993082637 0.982707143 0.956810998 0.738554021 0.830799705 0.957252956 0.987658381 1.021691297 1 10.14456516 -6.100066659 3.458063955 1.015646973 0.878369224 0.447424487 0.066302805 0.169843376 3.804191144 0.010605338 0.018468959 7.94E-07 6.100066659 -0.137277749 SLIEEGGDWDRR ddPTM_HeLa_CUDC101_4h_R1 4 SLIEEGGDWDRR 12 1 Q15008;Q15008-4;C9J0E9;Q15008-3;Q15008-2;H7C531 Q15008 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 0 ;;; ;;; 177.57 3.01E-07 196223000 13821.4 11686.4 11066.5 11315.7 13097.2 12389.2 11581.8 11290.5 12569.1 12112.8 FALSE FALSE TRUE 12201.27644 12046.44413 11664.78846 11777.20316 12131.04565 12152.89665 12028.51391 12575.76488 12050.99638 12040.75253 1.013331718 1.000472695 0.968775701 0.978111885 1.00749896 1.009313714 0.998983567 1.044433465 1.000850765 1 13.55563794 -4.259297385 24.39685729 1.001560224 1.044433486 0.495267541 0.013672463 112.9163196 1285961.092 0.002132559 0.018932598 5.50E-05 4.259297385 0.042873262 SNVS(ph)SPATPTASSSSSTTPT(ph)RK ddPTM_HeLa_CUDC101_4h_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 S(0.01)NVS(0.538)S(0.179)PAT(0.261)PT(0.011)AS(0.004)S(0.012)S(0.011)S(0.028)S(0.081)T(0.072)T(0.065)PT(0.728)RK 74.321 0.0027028 40190000 3583 3030.7 3269.5 3111.5 3577.5 3422.8 3019.9 2007.8 3718.5 3464.4 TRUE FALSE FALSE 3163.006171 3124.072275 3446.25906 3238.400419 3313.594952 3357.515793 3136.378555 2236.359836 3565.221856 3443.793595 0.918465664 0.907160139 1.000715915 0.940358454 0.96219325 0.974946872 0.910733605 0.649388465 1.035260029 1 11.74978296 -4.262156447 3.096711343 0.958779819 0.601761438 0.862650334 0.037778852 0.091348821 1.315025835 0.005037035 0.079260941 5.47E-05 4.262156447 -0.357018381 SGLQLS(ph)LEQGTGENSFR ddPTM_HeLa_CUDC101_4h_R1 2 SGLQLSLEQGTGENSFR 17 0 P23497;P23497-2;P23497-3;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;C9JBL0 P23497 SP100 Nuclear autoantigen Sp-100 1 0 SGLQLS(0.999)LEQGT(0.001)GENSFR;SGLQLS(1)LEQGTGENSFR ; 119.51 0.00031347 15419800 1794.94 1519.2 1412.99 1494.2 1975.88 1479.64 1681.58 2393.3 1823.54 2036.41 TRUE FALSE FALSE 1584.539854 1566.004751 1489.380513 1555.139934 1830.123269 1451.418332 1746.439104 2665.743598 1748.372909 2024.297343 0.782760428 0.773604114 0.735751849 0.768236909 0.904078284 0.716998586 0.862738426 1.316873535 0.863693723 1 10.9832055 -4.262144122 7.261085761 0.854340658 1.322634662 0.735524215 0.087044138 0.05471815 24.89527803 0.01578155 0.126079332 5.47E-05 4.262144122 0.468294004 EPGGRS(ph)PAFVQLAPLSSK ddPTM_HeLa_CUDC101_4h_R1 2 EPGGRSPAFVQLAPLSSK 18 1 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 EPGGRS(1)PAFVQLAPLSSK;EPGGRS(1)PAFVQLAPLSSK ; 91.518 0.0026271 44318000 3357.8 2506.6 2449.1 2585.26 3000.9 2465.4 2824.1 3638.8 2786 3208.9 TRUE FALSE FALSE 2964.203774 2583.825375 2581.505754 2690.698077 2779.529586 2418.376603 2933.026483 4053.026283 2671.159901 3189.81332 0.929271865 0.810024009 0.809296813 0.843528385 0.871376882 0.758156155 0.919497848 1.270615512 0.837403206 1 11.63925628 -4.262132089 7.806296706 0.914136693 1.273810261 0.655101895 0.081528419 0.056214126 38.49297856 0.013650983 0.107392739 5.47E-05 4.262132089 0.359673568 SLDSDES(ph)EDEEDDYQQK ddPTM_HeLa_CUDC101_4h_R1 3 SLDSDESEDEEDDYQQK 17 0 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 1 0 SLDS(0.226)DES(0.774)EDEEDDYQQK;S(0.001)LDS(0.042)DES(0.957)EDEEDDYQQK;SLDSDES(1)EDEEDDYQQK ;; 305.4 3.14E-124 29151000 8494.5 7550.6 6524.5 6634.1 8102.8 7610.1 7849.1 11935.2 8192.4 9042.6 TRUE FALSE FALSE 7498.787587 7783.225036 6877.234206 6904.667273 7505.072587 7464.950022 8151.842416 13293.85492 7854.705804 8988.814213 0.834235463 0.865878953 0.765088035 0.768139947 0.834934665 0.830471055 0.906887407 1.478933106 0.873831144 1 13.1339151 -4.262130282 5.461127252 0.882456347 1.500977222 0.877252098 0.069501966 0.05088029 5.731945765 0.013099909 0.117188866 5.47E-05 4.262130282 0.618520875 VSPASESPFS(ph)EEESR ddPTM_HeLa_CUDC101_4h_R1 2 VSPASESPFSEEESR 15 0 E9PPC2;E9PJ11;E9PI48;E9PRH8;E9PLB9;E9PN31;E9PL66;E9PNN9;A0A0C4DG86;Q9NX95-4;Q9NX95-3;Q9NX95 E9PPC2 SYBU Syntabulin 1 0 VSPASES(0.001)PFS(0.999)EEESR;VSPASES(0.093)PFS(0.906)EEESR ; 185.86 8.09E-11 6257200 2726.5 2254.2 2318.9 2109.9 2208.7 2453.1 3009.5 4860.8 2467.5 2590.8 TRUE FALSE FALSE 2406.903803 2323.64923 2444.266748 2195.950842 2045.768601 2406.311205 3125.577423 5414.133824 2365.788606 2575.389806 0.934578446 0.902251467 0.949086131 0.852667366 0.794352993 0.934348346 1.213632754 2.102258 0.918613796 1 11.3305751 -4.262116169 2.365412288 0.939747661 2.379524567 0.97281545 0.059806529 0.076598463 0.507271829 0.010223337 0.22535891 5.47E-05 4.262116169 1.439776905 up SLITGPSK(ac)LSR ddPTM_HeLa_CUDC101_4h_R1 2 SLITGPSKLSR 11 1 A0A088AWL3;O75376;O75376-2;E7EVK1 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 0 1 ; SLITGPSK(1)LSR;SLITGPSK(1)LSR 119.34 0.0021935 16413900 763.41 952.77 629.08 1540.62 2338.35 3190.8 3980.5 5133.4 174.236 110.6 FALSE TRUE FALSE 673.9242371 982.1237144 663.0899677 1603.453143 2165.854579 3129.940806 4134.029218 5717.765506 167.0539183 109.9421463 6.129807902 8.933095702 6.031262715 14.58451738 19.69994813 28.46898039 37.60186023 52.00703915 1.51947114 1 6.780600739 -2.809929037 0.359203834 1.93015369 186.7600825 0.991627951 1.472596831 0.970643543 0.039032 0.469433659 97.1857937 0.00154907 2.809929037 184.8299288 SLIVEGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 SLIVEGKR 8 1 D6R9L5;H0Y8X0;A0A494C198;B4DFG0;H0Y993;P35659;A0A494C028 D6R9L5 DEK Protein DEK 0 1 ; SLIVEGK(1)R;SLIVEGK(1)R 88.948 0.030699 1584430 1539.25 875.99 341.23 1134.4 820.48 917.33 1041.34 894.78 588 323.35 FALSE TRUE FALSE 1358.821448 902.9782136 359.677926 1180.665735 759.954825 899.8334586 1081.504833 996.6381384 563.7623911 321.4266998 4.227469122 2.809281911 1.119004508 3.673203676 2.364317667 2.799498172 3.364701293 3.100670041 1.753937652 1 8.328345964 AVGS(ph)PLCVPAR ddPTM_HeLa_CUDC101_4h_R1 2 AVGSPLCVPAR 11 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 AVGS(1)PLCVPAR;AVGS(1)PLCVPAR ; 126.66 0.0028022 97492000 4550 3821.3 3357.5 3368.6 3895.6 3540.7 3005.1 1182.21 3716.6 1902.86 TRUE FALSE FALSE 4016.655897 3939.029724 3539.016606 3505.986068 3608.229349 3473.167047 3121.007714 1316.788008 3563.400175 1891.541704 2.123482601 2.082444027 1.870969378 1.853507148 1.90756003 1.836156739 1.649980916 0.696145374 1.883860222 1 10.88534687 -4.262107575 6.531712636 1.673587343 0.677217113 0.483038793 0.319379086 0.121412762 31.68816027 0.064801863 0.534311142 5.47E-05 4.262107575 -0.99637023 (ac)S(ph)ETAPAETATPAPVEK ddPTM_HeLa_CUDC101_4h_R1 2 SETAPAETATPAPVEK 16 0 P16401 P16401 HIST1H1B Histone H1.5 1 0 S(0.904)ET(0.096)APAETATPAPVEK;S(0.976)ET(0.024)APAETATPAPVEK ; 150.12 0.00026059 31232000 9009.7 7494 11461.4 9809.3 8124.3 7433.5 8770.3 15370.1 7240.8 9874.7 TRUE FALSE FALSE 7953.596624 7724.881257 12081.03795 10209.36565 7524.986575 7291.718373 9108.573409 17119.77006 6942.331159 9815.964845 0.810271507 0.786971162 1.230753995 1.04007765 0.76660692 0.742842755 0.9279346 1.7440741 0.707248984 1 13.26091437 -4.262101218 6.811904515 0.910148763 1.757710468 0.728997866 0.155779308 0.043457711 14.0574301 0.020857819 0.169673287 5.47E-05 4.262101218 0.847561706 SLLDASEEAIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 SLLDASEEAIKK 12 1 P18206-2;P18206 P18206-2 VCL Vinculin 0 1 SLLDASEEAIK(1)K 125.72 0.0011563 520540 445.65 0 0 140.63 168.18 0 220.58 185.2 305.24 165.12 FALSE TRUE FALSE 393.4115826 0 0 146.3654993 155.7736965 0 229.0878445 206.2824194 292.657878 164.1378589 2.396836325 0 0 0.891722971 0.949041845 0 1.395703868 1.256763192 1.783000461 1 7.358764229 -7.258207877 24.99973487 1.65961715 0.642929407 0.424398966 0.577317087 256.4335075 1983837.549 0.11843521 0.141878373 5.52E-08 7.258207877 -1.016687743 GSLGIS(ph)QEEQ ddPTM_HeLa_CUDC101_4h_R1 1 GSLGISQEEQ 10 0 H3BRR0;Q9NZD8-2;Q9NZD8 H3BRR0 SPG21 Maspardin 1 0 GS(0.001)LGIS(0.999)QEEQ 110.08 0.0012187 0 6204.8 4647.3 4557.8 4904.8 5437.2 5286.3 5199.2 6140.7 5105.6 5657.5 TRUE FALSE FALSE 5477.48275 4790.477805 4804.208455 5104.838944 5036.108588 5185.472635 5399.734886 6839.732466 4895.145007 5623.848938 0.973974018 0.851814808 0.854256312 0.907712672 0.895491441 0.922050484 0.960149347 1.216201314 0.870426119 1 12.45734213 -4.262081712 6.011431254 0.952039341 1.223208689 0.663971704 0.059255323 0.072214714 12.58346048 0.009358183 0.079757263 5.47E-05 4.262081712 0.271169348 EKGPTTGEGALDLSDVHS(ph)PPKSPEGK ddPTM_HeLa_CUDC101_4h_R1 2 EKGPTTGEGALDLSDVHSPPKSPEGK 26 2 O95684;O95684-2 O95684 FGFR1OP FGFR1 oncogene partner 1 0 EKGPTTGEGALDLS(0.001)DVHS(0.854)PPKS(0.145)PEGK;EKGPT(0.001)T(0.001)GEGALDLS(0.015)DVHS(0.876)PPKS(0.108)PEGK ; 104.23 3.97E-07 31081000 6170.1 4368.2 4319.3 4742.6 5860.9 4747.5 4829 6082.2 5407 4722.3 TRUE FALSE FALSE 5446.850231 4502.779064 4552.814423 4936.023727 5428.553084 4656.949347 5015.256148 6774.573063 5184.121171 4694.21155 1.160333354 0.959219459 0.969878408 1.051512842 1.156435543 0.992062096 1.068391591 1.443175918 1.104364624 1 12.19666714 -4.262067205 6.695822895 1.059890326 1.44990301 0.741815375 0.069199335 0.051094811 15.1212769 0.011023701 0.090202383 5.47E-05 4.262067205 0.390012684 DRRPS(ph)VDAPVTDVGFLR ddPTM_HeLa_CUDC101_4h_R1 2 DRRPSVDAPVTDVGFLR 17 2 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8;G3V536;G3V3S3 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 DRRPS(0.999)VDAPVT(0.001)DVGFLR;DRRPS(1)VDAPVTDVGFLR ; 70.501 0.020746 250770000 2079.8 2266.2 2052.09 1829.08 2345.2 2088.5 2146.1 3103.3 2118.7 2421.6 TRUE FALSE FALSE 1836.008997 2336.018936 2163.032193 1903.677788 2172.199268 2048.665342 2228.875796 3456.567128 2031.366289 2407.196216 0.762716801 0.970431459 0.898569123 0.790827842 0.902377319 0.851058725 0.925921943 1.435930775 0.843872334 1 11.23313803 -4.262065158 4.348863461 0.884497956 1.47585789 0.853230591 0.069023018 0.073789669 3.313068246 0.012598125 0.134122873 5.47E-05 4.262065158 0.591359934 TPTSSPASS(ph)PLVAK ddPTM_HeLa_CUDC101_4h_R1 1 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 TPTSS(0.004)PAS(0.226)S(0.77)PLVAK 149.82 0.00024173 25453000 4424.5 3418.1 3487.8 3783.6 4244.8 4198.9 3599.9 2029.5 3121.1 3583.5 TRUE FALSE FALSE 3905.866817 3523.40761 3676.361018 3937.911562 3931.669561 4118.812978 3738.749349 2260.530076 2992.446937 3562.185183 1.096480564 0.989114105 1.03205219 1.105476375 1.103724079 1.156260207 1.049566251 0.634590837 0.840059341 1 11.7985468 -4.262058244 7.113916375 1.057399534 0.628824876 0.672032534 0.084616304 0.031004095 12.61011264 0.007952524 0.063952245 5.47E-05 4.262058244 -0.428574658 SLLSNLDEVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 SLLSNLDEVKK 11 1 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 1 SLLSNLDEVK(1)K 85.522 0.031016 495230 413.15 145.87 128.83 74.706 443.72 138.25 351.33 183.91 348.57 243.7 FALSE TRUE FALSE 364.7211833 150.3640818 135.7949395 77.75283359 410.9876596 135.6131116 364.8809158 204.845571 334.2017971 242.2504616 1.505554132 0.620696781 0.560555958 0.320960518 1.696540254 0.55980538 1.506213501 0.845594141 1.379571353 1 7.920355604 -7.261062012 24.99999855 1.238733893 0.883660589 0.168720138 0.423423768 53.93299293 3573018.207 0.072524049 0.085947184 5.48E-08 7.261062012 -0.355073304 SLMLHYEFLQRVK ddPTM_HeLa_CUDC101_4h_R1 1 SLMLHYEFLQRVK 13 1 F5GY80;F5H7G1;P07358 F5GY80 C8B Complement component C8 beta chain 0 0 54.7 0.038253 729210 171.69 129.25 195.59 150.97 354.52 265.37 161.67 258.45 148.76 256.99 FALSE FALSE TRUE 151.5647585 133.2320393 206.164187 157.1272091 328.3677659 260.3085094 167.9056661 287.8709033 142.6280498 255.4614121 0.593298053 0.521534889 0.807026726 0.615072186 1.285390867 1.018973892 0.6572643 1.126866484 0.558315437 1 7.996961575 -5.78555168 24.99980099 0.767475603 0.99583781 0.349394063 0.207269979 294.953315 305808.9704 0.034161299 0.061945049 1.64E-06 5.78555168 0.228362207 TTS(ph)FKGTSPSSK ddPTM_HeLa_CUDC101_4h_R1 2 TTSFKGTSPSSK 12 1 F8W8I7;F5H6V0;F5H497;F5GWA4;Q9H3F6-2;Q9H3F6 F8W8I7 KCTD10 BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 1 0 T(0.195)T(0.137)S(0.649)FKGT(0.019)S(0.001)PSSK;TT(0.004)S(0.996)FKGT(0.001)SPSSK ; 162.67 0.00043118 44083000 14222.5 11573.2 10464.5 11083.8 10763.3 10625.5 10921.1 15636.8 10153.4 10147.7 TRUE FALSE FALSE 12555.36011 11929.75657 11030.24252 11535.84527 9969.312803 10422.83629 11342.33049 17416.83011 9734.872554 10087.34103 1.244664979 1.182646303 1.09347374 1.14359624 0.988299372 1.033259038 1.124412316 1.726602685 0.965058337 1 13.30025832 -4.261984296 6.333251145 1.108562667 1.740124968 0.823904659 0.088310185 0.043694931 9.778490362 0.014146712 0.118170875 5.47E-05 4.261984296 0.631562301 T(ph)PSEIQFHQVK ddPTM_HeLa_CUDC101_4h_R1 1 TPSEIQFHQVK 11 0 C9JCU6;Q12851-2;Q12851 C9JCU6 MAP4K2 Mitogen-activated protein kinase kinase kinase kinase 2 1 0 T(0.778)PS(0.222)EIQFHQVK 112.84 0.029807 6960100 1219.8 922.77 759.86 1091.4 1187.5 985.12 980.65 1250.5 906.94 967.25 TRUE FALSE FALSE 1076.816893 951.1994499 800.9403301 1135.912009 1099.900491 966.3304773 1018.473999 1392.851865 869.5555493 961.496754 1.119938147 0.989290339 0.833014076 1.181399734 1.14394613 1.00502729 1.059258905 1.448628775 0.904376999 1 9.909138177 -4.261940676 6.271690737 1.048803491 1.45771488 0.593388115 0.103421662 0.06383301 13.61713527 0.013193821 0.110696149 5.47E-05 4.261940676 0.40891139 GGAPDPSPGATATPGAPAQPS(ph)SPDARR ddPTM_HeLa_CUDC101_4h_R1 1 GGAPDPSPGATATPGAPAQPSSPDARR 27 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 0 GGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDARR 128.09 3.91E-11 15225000 1545.1 1829.1 1428 1142.5 1741.6 1387.5 1400 1999.5 1750.8 1419.1 TRUE FALSE FALSE 1363.98572 1885.452403 1505.201999 1189.096088 1613.125638 1361.035749 1453.998469 2227.114998 1678.631283 1410.65913 0.966913758 1.336575479 1.067020351 0.842936513 1.143526174 0.964822557 1.030722758 1.578776155 1.189962371 1 10.4621537 -4.261877341 6.088885502 1.014765096 1.593103881 0.543082879 0.137148471 0.06058626 11.2083541 0.016988199 0.144391295 5.47E-05 4.261877341 0.578338784 GYYSPYSVS(ph)GSGSTAGSR ddPTM_HeLa_CUDC101_4h_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 GYYS(0.021)PYS(0.284)VS(0.633)GS(0.006)GS(0.006)T(0.019)AGS(0.029)R 104.16 0.0011289 10742000 4261.4 3587.1 4063.1 3966.4 4698.9 3988.6 3967.7 5153.9 4834.7 4416.8 TRUE FALSE FALSE 3761.885152 3697.614299 4282.763476 4128.166936 4352.271509 3912.5241 4120.735518 5740.599143 4635.41162 4390.528677 0.856818262 0.84217974 0.975455074 0.940243702 0.991286432 0.891128242 0.9385511 1.307496105 1.055775275 1 12.10017895 -4.261845064 6.444470249 0.929721933 1.31524442 0.740162335 0.064257606 0.043434889 10.58393234 0.008763904 0.072888641 5.47E-05 4.261845064 0.385522488 WTDGSLS(ph)PPAKEPLASDSR ddPTM_HeLa_CUDC101_4h_R1 1 WTDGSLSPPAKEPLASDSR 19 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 WTDGS(0.077)LS(0.9)PPAKEPLAS(0.018)DS(0.004)R 59.182 0.019936 49155000 3147.3 3040.1 2912.8 3161.1 3245.6 3040.5 2842.1 2399.2 3415.8 3026.2 TRUE FALSE FALSE 2778.378265 3133.761878 3070.274779 3290.023321 3006.178554 2982.507528 2951.720749 2672.31523 3274.999278 3008.200028 0.923601569 1.041739861 1.020635181 1.093685025 0.999328012 0.991459178 0.981224893 0.888343596 1.088690662 1 11.55468479 -4.261820227 5.039258888 0.986100454 0.883662252 0.18066746 0.055399284 0.202208647 16.17495753 0.007597962 0.071831011 5.47E-05 4.261820227 -0.102438201 SMMS(ph)PMADR ddPTM_HeLa_CUDC101_4h_R1 4 SMMSPMADR 9 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 S(0.002)MMS(0.998)PMADR;S(0.001)MMS(0.999)PMADR;SMMS(1)PMADR;S(0.016)MMS(0.984)PMADR ;;; 139.31 0.001957 42848400 5307.95 4674.82 4935.21 4392.6 5224.3 5157.51 4716.18 3098.25 5051.85 5253.06 TRUE FALSE FALSE 4685.760147 4818.845663 5202.022381 4571.749214 4838.913797 5059.13909 4898.084642 3450.942256 4843.610605 5221.814565 0.897343268 0.922829718 0.996209711 0.875509683 0.926672852 0.968846945 0.938004324 0.660870319 0.927572311 1 12.35033551 -4.261814382 6.153165791 0.945685305 0.653902765 0.827069015 0.038096659 0.044171714 8.589297994 0.00633285 0.053637628 5.47E-05 4.261814382 -0.29178254 EKGPTTGEGALDLSDVHS(ph)PPKS(ph)PEGK ddPTM_HeLa_CUDC101_4h_R1 2 EKGPTTGEGALDLSDVHSPPKSPEGK 26 2 O95684;O95684-2 O95684 FGFR1OP FGFR1 oncogene partner 2 0 EKGPTTGEGALDLS(0.05)DVHS(0.981)PPKS(0.969)PEGK;EKGPTTGEGALDLS(0.029)DVHS(0.972)PPKS(0.999)PEGK ; 86.987 9.52E-06 176115000 7321.7 6180.4 5719.3 6080.8 6868.3 6732.6 6518.5 7602 7318 7375.1 TRUE FALSE FALSE 6463.461425 6370.810798 6028.502658 6328.801307 6361.639193 6604.186872 6769.920729 8467.380952 7016.348943 7331.232577 0.881633662 0.868995865 0.822304107 0.863265657 0.867744834 0.900828995 0.923435542 1.154973719 0.957049019 1 12.83984006 -4.261765424 5.704334834 0.915266232 1.162666658 0.685743138 0.051001028 0.086314955 11.79687445 0.009427078 0.082736716 5.47E-05 4.261765424 0.247400426 KAEDS(ph)DS(ph)EPEPEDNVR ddPTM_HeLa_CUDC101_4h_R1 5 KAEDSDSEPEPEDNVR 16 1 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 2 0 KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR ;;;; 126.63 0.0009924 515375000 23344.8 20075.9 19342.7 18726.7 19762 20665.4 20255.9 22629.8 21253.9 21014.7 TRUE FALSE FALSE 20608.35793 20694.41468 20388.42487 19490.45577 18304.19663 20271.24193 21037.17685 25205.88496 20377.80525 20889.70363 0.986531848 0.990651426 0.976003549 0.933017343 0.876230556 0.970393946 1.007059613 1.206617643 0.975495182 1 14.3505044 -4.261733556 3.43015346 0.978237118 1.235458489 0.794028111 0.036380828 0.120212249 2.379866635 0.005790119 0.080346284 5.47E-05 4.261733556 0.257221371 SSTPLPTISSS(ph)AENTR ddPTM_HeLa_CUDC101_4h_R1 1 SSTPLPTISSSAENTR 16 0 P42166;P42167;G5E972;H0YJH7;P42167-2;P42167-3 P42166;P42167 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 SSTPLPTIS(0.01)S(0.233)S(0.756)AENT(0.001)R 145.79 0.00024554 12262000 2536 2340.7 2056.7 2012.4 2191.4 2111.6 2623.2 8772.3 2217.1 2993 TRUE FALSE FALSE 2238.733924 2412.814193 2167.891423 2094.47437 2029.744788 2071.324748 2724.377703 9770.903173 2125.7102 2975.197503 0.75246565 0.810976142 0.728654626 0.703978263 0.682221865 0.696197394 0.91569642 3.284119177 0.714477004 1 11.53876973 -4.261711606 5.580038 0.826652261 3.369195471 0.980696792 0.105344545 0.017367984 2.150147141 0.018867966 0.167648449 5.47E-05 4.261711606 2.54254321 up MMCHPLDQLAT(ph)RT(ph)QKKS(ph)ATSK ddPTM_HeLa_CUDC101_4h_R1 1 MMCHPLDQLATRTQKKSATSK 21 3 A0A087X1X6 A0A087X1X6 FOXN2 3 0 MMCHPLDQLAT(0.998)RT(0.575)QKKS(0.495)AT(0.472)S(0.46)K 40.142 0.033015 34010000 1929.1 2256.2 2198.2 2148.1 1375.6 1479.1 1890.2 6364.3 2000.2 1941.3 TRUE FALSE FALSE 1702.973822 2325.710848 2317.041341 2235.708803 1274.124729 1450.888632 1963.105647 7088.786187 1917.750909 1929.753061 0.882482768 1.205185728 1.200693181 1.158546577 0.660252731 0.751851965 1.017283344 3.673416215 0.993780473 1 10.91420053 -4.261693527 6.627035633 0.962315021 3.723364702 0.95607033 0.172821557 0.016755884 4.692163017 0.025042576 0.206779022 5.47E-05 4.261693527 2.761049681 RS(ph)QAGVSSGAPPGR ddPTM_HeLa_CUDC101_4h_R1 2 RSQAGVSSGAPPGR 14 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 RS(0.999)QAGVS(0.001)SGAPPGR;RS(0.999)QAGVS(0.001)SGAPPGR ; 75.91 0.018319 2461100 729.89 1065.65 786.87 681.6 896.74 834.23 762.02 493.36 626.32 878.96 TRUE FALSE FALSE 644.3334006 1098.481413 829.4105724 709.3985941 830.5892768 818.3184527 791.4113667 549.5221082 600.5028245 873.7319068 0.737449778 1.257229368 0.949273531 0.811917922 0.950622577 0.936578424 0.905782839 0.628936753 0.68728499 1 9.771046865 -4.261677528 7.030666367 0.910372225 0.62487011 0.249209918 0.148837783 0.120952357 46.00920675 0.020155934 0.163604566 5.47E-05 4.261677528 -0.285502115 TGSGSPFAGNS(ph)PAREGEQDAASLK ddPTM_HeLa_CUDC101_4h_R1 1 TGSGSPFAGNSPAREGEQDAASLK 24 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 T(0.001)GS(0.002)GS(0.016)PFAGNS(0.98)PAREGEQDAASLK 66.711 0.0011479 41777000 1749.6 1349.1 1267 1379.3 1390.9 1454.4 1458 1968.1 1437.9 1612.3 TRUE FALSE FALSE 1544.51454 1390.664172 1335.497852 1435.553816 1288.296078 1426.659743 1514.235548 2192.140549 1378.629153 1602.709968 0.963689358 0.867695466 0.833274815 0.895704054 0.803823589 0.890154658 0.944796987 1.367771208 0.860186298 1 10.64629766 -4.261675465 7.359655625 0.938882359 1.372854075 0.788719977 0.070174605 0.042791723 20.83823241 0.01147429 0.092103231 5.47E-05 4.261675465 0.433971716 SLPSTSSTSSTK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 SLPSTSSTSSTKR 13 1 A0A590UJA3;S4R3W2;A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UK73;B1AKN7 A0A590UJA3 NFIA Nuclear factor 1;Nuclear factor 1 A-type 0 1 ; SLPSTSSTSSTK(1)R;SLPSTSSTSSTK(1)R 252.97 9.59E-112 31791000 252.834 227.97 274.9 317.35 313.22 128.86 270.59 344.919 137.45 373.53 FALSE TRUE FALSE 223.1971818 234.9934855 289.7619255 330.2929047 290.1143846 126.4022102 281.0267469 384.1831847 131.7842528 371.3082269 0.601110252 0.632879824 0.780381108 0.889538342 0.781330344 0.340423942 0.756855697 1.034674583 0.354918753 1 8.536473471 -9.446765065 1.173777547 1.000355895 0.709805244 0 0.265016889 0.526017632 1.293879052 0.123695086 0.030645462 3.57E-10 9.446765065 -0.290550651 LTSS(ph)LEAGLQR ddPTM_HeLa_CUDC101_4h_R1 2 LTSSLEAGLQR 11 0 B7Z879;A0A087WXL6;Q9H270 B7Z879 VPS11 Vacuolar protein sorting-associated protein 11 homolog 1 0 LTS(0.041)S(0.959)LEAGLQR;LTS(0.045)S(0.955)LEAGLQR ; 160.86 0.00011421 17370600 3389.2 2608.6 2719.5 2826.7 2841.8 2706.6 2753 3567.7 3223.8 2823 TRUE FALSE FALSE 2991.923114 2688.967874 2866.524396 2941.985044 2632.166076 2654.976115 2859.184132 3973.832547 3090.913599 2806.20867 1.066179841 0.958220927 1.021493671 1.048384276 0.937979454 0.946107872 1.018877948 1.416085906 1.101455366 1 11.45440658 -4.261670314 8.013292251 1.014834008 1.419293244 0.853342133 0.050364011 0.023965477 18.9467702 0.006638244 0.052422674 5.47E-05 4.261670314 0.404459236 NPLEELRPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 NPLEELRPSPR 11 1 F8W130;Q12815;F8W052;F8VXF3;B7Z5Q9;F8W1E3;Q12815-3;Q12815-2 F8W130 TROAP Tastin 1 0 NPLEELRPS(1)PR 77.204 0.02544 4668200 2658.3 2012.1 2302.5 2455.3 2276.2 2526.4 2296.5 1184.1 2322.5 2619.1 TRUE FALSE FALSE 2346.698104 2074.090416 2426.980115 2555.437747 2108.289261 2478.213129 2385.076774 1318.893158 2226.765567 2603.521477 0.901355385 0.796648092 0.932191317 0.981531272 0.809783702 0.95186967 0.916096447 0.506580479 0.855289878 1 11.34624859 -4.261645469 5.557807651 0.931539767 0.491654756 0.742789352 0.06880895 0.05274365 6.413987686 0.009846652 0.087756592 5.47E-05 4.261645469 -0.439885011 LNQS(ph)AENGSSLPSAASSCAEAR ddPTM_HeLa_CUDC101_4h_R1 1 LNQSAENGSSLPSAASSCAEAR 22 0 Q8NB90-3;Q8NB90-2;Q8NB90 Q8NB90-3 SPATA5 Spermatogenesis-associated protein 5 1 0 LNQS(0.922)AENGS(0.046)S(0.032)LPSAASSCAEAR 137.73 4.12E-07 6041200 1091.4 874.4 1010.8 1277.4 1243.4 1204.5 1006.8 375.8 1295.2 1060.4 TRUE FALSE FALSE 963.4677465 901.3392276 1065.446906 1329.497893 1151.676859 1181.526169 1045.632613 418.579553 1241.811308 1054.092694 0.914025638 0.855085357 1.01077155 1.261272278 1.092576456 1.120893994 0.991974064 0.397099378 1.17808549 1 10.04178602 -4.261636773 8.528736896 0.996632655 0.393584071 0.69792433 0.124369399 0.038570923 44.42577529 0.017118339 0.134063301 5.47E-05 4.261636773 -0.603048583 SLQPAVAEK(ac)QGHQWK ddPTM_HeLa_CUDC101_4h_R1 1 SLQPAVAEKQGHQWK 15 1 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 0 1 SLQPAVAEK(1)QGHQWK 97.291 0.018796 1861000 876.76 1251.9 1430.6 1066.5 1088.7 1129 1128.3 1038.7 1104.6 1117.5 FALSE TRUE FALSE 773.9875219 1290.469555 1507.942563 1109.99648 1008.38877 1107.466206 1171.818909 1156.941409 1059.06792 1110.85306 0.696750587 1.161692398 1.357463572 0.999228898 0.907760717 0.996951123 1.05488201 1.04148915 0.953382547 1 10.11745228 -7.249610234 24.94671235 0.856798886 1.072103459 0.287598739 0.135686386 717.3441945 1512822.041 0.027310126 0.03330122 5.63E-08 7.249610234 0.215304572 S(ph)QESGYYDR ddPTM_HeLa_CUDC101_4h_R1 2 SQESGYYDR 9 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 S(0.998)QES(0.002)GYYDR;S(0.999)QES(0.001)GYYDR ; 123.26 0.0049141 278030000 1474.92 1385.44 1202.94 1159.06 1370.69 1267.92 1444.24 3906.2 1370.75 1540.53 TRUE FALSE FALSE 1302.032113 1428.123764 1267.974575 1206.331477 1269.576929 1243.736538 1499.944821 4350.866019 1314.247105 1531.366859 0.850241799 0.932581083 0.828001839 0.787748193 0.829048194 0.812174125 0.979481051 2.841165063 0.858218328 1 10.58060423 -4.261616897 5.286852947 0.897158108 2.921585221 0.987458147 0.066489443 0.014760941 1.443976021 0.011771056 0.108062383 5.47E-05 4.261616897 2.024427114 up GVIST(ph)PVIR ddPTM_HeLa_CUDC101_4h_R1 1 GVISTPVIR 9 0 Q9NZB2-4;Q9NZB2;Q9NZB2-6;A0A494C0Y9;A0A0C4DG79 Q9NZB2-4 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 1 0 GVIS(0.129)T(0.871)PVIR 128.6 0.017501 16093000 4598.2 3929.1 3951.6 4460.7 4702.6 4473.1 3845.9 1413.4 3700.2 3675.7 TRUE FALSE FALSE 4059.205966 4050.150914 4165.235449 4642.626627 4355.698567 4387.78307 3994.237651 1574.295743 3547.67619 3653.836773 1.110943433 1.108465201 1.139962102 1.270616865 1.192088984 1.200870029 1.093162585 0.430860994 0.97094545 1 11.83519647 -4.26161345 8.243557735 1.098899723 0.426206839 0.846940667 0.087547867 0.028935818 27.04447326 0.013748858 0.10822022 5.48E-05 4.26161345 -0.672692884 SDGAPASDSKPGS(ph)SEAAPSSK ddPTM_HeLa_CUDC101_4h_R1 2 SDGAPASDSKPGSSEAAPSSK 21 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 SDGAPASDS(0.001)KPGS(0.823)S(0.176)EAAPSSK;SDGAPASDSKPGS(0.921)S(0.057)EAAPS(0.018)S(0.004)K ; 110.36 1.42E-05 290420000 6681.2 5618 5989 6233.1 6264 6358.3 6372.4 8789.4 5164.6 7168.2 TRUE FALSE FALSE 5898.039864 5791.083921 6312.783456 6487.31276 5801.9172 6237.026021 6618.185603 9789.949768 4951.713002 7125.563228 0.827729637 0.812719463 0.885934663 0.910428068 0.814239803 0.875302881 0.928794734 1.37391943 0.69492233 1 12.79878834 -4.261601367 4.503553312 0.896837258 1.405559841 0.761448813 0.084180834 0.068138195 3.488697437 0.010574535 0.10955362 5.48E-05 4.261601367 0.508722583 QEKPAEKPAETPVAT(ph)SPTATDSTSGDSSR ddPTM_HeLa_CUDC101_4h_R1 2 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 2 P54727;P54727-2;H0Y579 P54727 RAD23B UV excision repair protein RAD23 homolog B 1 0 QEKPAEKPAET(0.189)PVAT(0.392)S(0.392)PT(0.023)AT(0.004)DSTSGDSSR;QEKPAEKPAET(0.005)PVAT(0.422)S(0.341)PT(0.067)AT(0.097)DS(0.029)T(0.029)S(0.008)GDS(0.001)SR ; 69.857 0.00021067 795480000 6407 6256.8 6537.1 6336.7 6622.3 5775.7 5913.3 5849.6 6077.7 6419.5 TRUE FALSE FALSE 5655.981172 6449.564592 6890.5154 6595.138016 6133.786122 5665.538145 6141.377962 6515.494819 5827.174634 6381.316529 0.886334528 1.010694982 1.079795269 1.033507425 0.961210135 0.887832177 0.962399833 1.021026741 0.913161823 1 12.63963838 -4.261601049 11.6984246 0.962221293 1.021077671 0.043866176 0.060318068 0.15246888 1696.875954 0.009612367 0.073758257 5.48E-05 4.261601049 0.058856378 TNSGISSASGGSTEPTTPDS(ph)ERPAQALLR ddPTM_HeLa_CUDC101_4h_R1 1 TNSGISSASGGSTEPTTPDSERPAQALLR 29 1 A2A2F0;Q86X10-4;Q86X10-2;Q86X10-3;Q86X10;A0A0J9YW54 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 0 TNSGISSASGGSTEPT(0.11)T(0.318)PDS(0.571)ERPAQALLR 103.33 1.55E-09 25365000 738.24 602.44 730.95 629.22 609.66 561.5 579.12 1008.8 796.82 503.77 TRUE FALSE FALSE 651.7046263 621.0004623 770.467368 654.8823113 564.6865964 550.790323 601.4568524 1123.637714 763.9747423 500.7735536 1.301395854 1.240082384 1.538554427 1.307741406 1.12762863 1.099879015 1.201055543 2.243804023 1.525589234 1 8.968014564 -4.261597609 7.430295998 1.187653317 2.255818675 0.723978634 0.17719001 0.035990437 18.45288221 0.023973664 0.192286978 5.48E-05 4.261597609 1.068165358 SDKSPDLAPT(ph)PAPQSTPR ddPTM_HeLa_CUDC101_4h_R1 1 SDKSPDLAPTPAPQSTPR 18 1 F8WAE5;Q9BY44-2;Q9BY44-4;Q9BY44-3;Q9BY44 F8WAE5 EIF2A "Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed" 1 0 S(0.001)DKS(0.031)PDLAPT(0.957)PAPQS(0.011)TPR 186.17 5.31E-10 702530000 4671.1 4323 4577.6 3827.2 4526.1 4228.7 4073.5 4506.7 4622.2 4237.9 TRUE FALSE FALSE 4123.560739 4456.186506 4825.078902 3983.289759 4192.21862 4148.044593 4230.61626 5019.724511 4431.67096 4212.692782 0.978842026 1.057800019 1.145366907 0.945544801 0.995139887 0.984653951 1.004254637 1.191571465 1.051980571 1 12.04052699 -4.26157325 7.867876875 1.002376091 1.193225872 0.451607867 0.05489497 0.057771087 40.93966991 0.007358114 0.058391142 5.48E-05 4.26157325 0.190849781 NS(ph)PEDLGLSLTGDSCK ddPTM_HeLa_CUDC101_4h_R1 4 NSPEDLGLSLTGDSCK 16 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 NS(1)PEDLGLSLTGDSCK;NS(0.974)PEDLGLS(0.025)LTGDSCK;NS(0.999)PEDLGLS(0.001)LTGDSCK;NS(1)PEDLGLSLTGDSCK ;;; 255.69 1.47E-57 649251000 21565.7 19358.9 16779.4 17411.7 18806.9 18341 17018.9 11277.3 19939.1 16180.2 TRUE FALSE FALSE 19037.80134 19955.32476 17686.54512 18121.82439 17419.55246 17991.17598 17675.32467 12561.06225 19117.20186 16083.95945 1.183651413 1.240697281 1.099638753 1.126701696 1.083038819 1.118578795 1.098941136 0.780968286 1.188588041 1 13.97333498 -4.261542148 6.729613735 1.104812711 0.775343503 0.701963083 0.066222218 0.062273971 18.83446651 0.011289895 0.092990405 5.48E-05 4.261542148 -0.329469208 YGQFSGLNPGGRPIT(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 YGQFSGLNPGGRPITPPR 18 1 P62136-3;P62136;P62136-2 P62136-3 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit 1 0 YGQFSGLNPGGRPIT(1)PPR 150.68 0.0010568 28347000 1339.2 1116.8 1201.2 1073.9 1030.2 906.88 889.15 510.69 1075.8 1319.3 TRUE FALSE FALSE 1182.221006 1151.207284 1266.140505 1117.698284 954.2041984 889.582775 923.4448133 568.8248853 1031.455069 1311.452745 0.901459096 0.877810725 0.96544882 0.85225967 0.727593276 0.678318589 0.704138839 0.433736471 0.786498082 1 10.35695011 -3.904801117 0.37425905 0.971454363 5.56E-19 0.758710361 0.077588789 1.630407554 0.12923755 0.015926844 0.750543904 0.000124508 3.904801117 -0.971454363 down IISPGSSTPSSTRS(ph)PPPGRDESYPR ddPTM_HeLa_CUDC101_4h_R1 2 IISPGSSTPSSTRSPPPGRDESYPR 25 2 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 IIS(0.01)PGS(0.034)S(0.034)T(0.034)PS(0.04)S(0.136)T(0.136)RS(0.578)PPPGRDESYPR;IISPGSS(0.001)T(0.005)PS(0.175)S(0.175)T(0.175)RS(0.456)PPPGRDES(0.007)Y(0.006)PR ; 71.894 0.00038719 27282900 3336.72 3112.6 3262.38 2799.6 3267 2862.7 2985.44 3814.7 3534.5 3275.95 TRUE FALSE FALSE 2945.59474 3208.495517 3438.754131 2913.779789 3025.999919 2808.098767 3100.589421 4248.950028 3388.806414 3256.464504 0.904537647 0.985269612 1.055977772 0.894767864 0.92922859 0.862315178 0.952133646 1.304773942 1.040639752 1 11.66909079 -4.261540015 9.810061655 0.950772828 1.305735513 0.747488115 0.060266744 0.026454088 76.18804734 0.008051958 0.062367095 5.48E-05 4.261540015 0.354962686 SPPREGS(ph)QGELTPANSQSR ddPTM_HeLa_CUDC101_4h_R1 2 SPPREGSQGELTPANSQSR 19 1 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QQX0 C9JFE4 GPS1 COP9 signalosome complex subunit 1 1 0 SPPREGS(0.999)QGELTPANSQSR;S(0.164)PPREGS(0.835)QGELT(0.001)PANSQSR ; 70.679 0.0074829 47290000 1237.54 897.66 1155.23 1020.82 1147.53 1119.86 1071.15 1173.91 1169 1158.53 TRUE FALSE FALSE 1092.477437 925.3158406 1217.685228 1062.453452 1062.878998 1098.500536 1112.464614 1307.543169 1120.813325 1151.639012 0.948628369 0.803477332 1.057349756 0.922557712 0.922927225 0.953858392 0.965983787 1.135375891 0.973233204 1 10.16947285 -4.261531276 5.642947534 0.960026834 1.141236961 0.437430534 0.062209493 0.106861453 13.90253516 0.008387885 0.074258682 5.48E-05 4.261531276 0.181210126 KETSFGS(ph)SENITMTSLSK ddPTM_HeLa_CUDC101_4h_R1 1 KETSFGSSENITMTSLSK 18 1 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-6 SYNRG Synergin gamma 1 0 KET(0.015)S(0.007)FGS(0.674)S(0.268)ENIT(0.032)MT(0.003)S(0.001)LSK 51.554 0.038292 21980000 4251.9 3488.3 3496.4 3895.2 4958.4 3841.2 3866.7 3790 4483.8 4370 TRUE FALSE FALSE 3753.498727 3595.770388 3685.42596 4054.063092 4592.628711 3767.93551 4015.839914 4221.43828 4298.975866 4344.007046 0.864063683 0.827754272 0.848393182 0.933254263 1.057233255 0.867387062 0.924455203 0.9717844 0.989633723 1 12.08481073 -4.261522557 12.51904332 0.924375898 0.971807297 0.040279032 0.070499572 0.199301661 3871.861239 0.010774621 0.082731547 5.48E-05 4.261522557 0.047431399 GGGSCSGSAGGGGS(ph)GSLPSQR ddPTM_HeLa_CUDC101_4h_R1 2 GGGSCSGSAGGGGSGSLPSQR 21 0 O15234 O15234 CASC3 Protein CASC3 1 0 GGGSCSGS(0.004)AGGGGS(0.991)GS(0.006)LPSQR;GGGSCSGSAGGGGS(0.993)GS(0.007)LPSQR ; 152.59 4.94E-07 17372800 1680.48 1215.99 1505.71 1468.95 1138.34 1281.23 1045.66 651.85 1568.34 1490.28 TRUE FALSE FALSE 1483.496682 1253.453211 1587.113237 1528.86013 1054.366926 1256.792672 1085.991456 726.0539691 1503.692361 1481.415748 1.001404692 0.846118459 1.071348971 1.032026379 0.711729254 0.848372696 0.73307676 0.490108175 1.015037381 1 10.53276086 -3.902985608 0.542053028 0.999960543 2.15E-18 0.756220565 0.087059186 1.807713896 0.273451461 0.016108807 1.241374057 0.00012503 3.902985608 -0.999960543 down ATT(ph)PADGEEPAPEAEALAAAR ddPTM_HeLa_CUDC101_4h_R1 3 ATTPADGEEPAPEAEALAAAR 21 0 Q5JZ02;Q96S44 Q5JZ02 TP53RK TP53-regulating kinase 1 0 ATT(1)PADGEEPAPEAEALAAAR;AT(0.001)T(0.999)PADGEEPAPEAEALAAAR;AT(0.006)T(0.994)PADGEEPAPEAEALAAAR ;; 321.93 6.04E-169 85071000 4488.4 3717.6 3375.25 3402.67 4271.68 3885.47 3855.79 5126.1 3786.41 3998.68 TRUE FALSE FALSE 3962.276556 3832.13485 3557.726225 3541.44559 3956.566677 3811.361133 4004.509112 5709.634504 3630.332577 3974.895674 0.996825296 0.964084385 0.895048956 0.890953092 0.995388811 0.958858155 1.007450117 1.436423739 0.913315185 1 11.95670128 -4.261497608 4.599947479 0.978663051 1.46510898 0.907733823 0.045422559 0.042214517 2.344374262 0.00648283 0.066014517 5.48E-05 4.261497608 0.486445929 S(ph)LPTTVPESPNYR ddPTM_HeLa_CUDC101_4h_R1 4 SLPTTVPESPNYR 13 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 0 S(1)LPTTVPESPNYR;S(1)LPTTVPESPNYR;S(1)LPTTVPESPNYR;S(0.998)LPT(0.002)T(0.001)VPESPNYR ;;; 236.28 2.37E-43 1965490000 4577.41 3672.24 4009.94 3459.32 3558.22 3931.47 3781.77 4993.44 3877.5 3998.86 TRUE FALSE FALSE 4040.852939 3785.377362 4226.729486 3600.406022 3295.7372 3856.48376 3927.634136 5561.873025 3717.667809 3975.074603 1.016547698 0.952278319 1.063308216 0.905745522 0.829100716 0.970166386 0.988065515 1.39918708 0.935244789 1 11.95676622 -4.261468334 8.634641772 0.985663917 1.401471396 0.798995277 0.064794933 0.030134511 37.22577393 0.009259146 0.072649471 5.48E-05 4.261468334 0.415807479 APES(ph)DTGDEDQDQERDTVFLK ddPTM_HeLa_CUDC101_4h_R1 2 APESDTGDEDQDQERDTVFLK 21 1 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 APES(0.959)DT(0.041)GDEDQDQERDTVFLK;APES(0.944)DT(0.056)GDEDQDQERDTVFLK ; 82.177 0.00072288 128955000 2728.7 2644.1 1912.16 2049.73 2738.4 2496 2429.7 2755.2 2776.2 2805.2 TRUE FALSE FALSE 2408.845922 2725.561587 2015.537154 2133.326849 2536.393688 2448.392959 2523.414343 3068.840831 2661.763861 2788.514546 0.863845565 0.977424196 0.722799584 0.765040603 0.909585963 0.878027681 0.90493139 1.100528895 0.954545446 1 11.44528108 -4.261465922 10.85668735 0.904582596 1.100812934 0.347820668 0.08474279 0.071549741 426.80577 0.013308069 0.10273072 5.48E-05 4.261465922 0.196230338 SQDATFSPGSEQAEKS(ph)PGPIVSR ddPTM_HeLa_CUDC101_4h_R1 4 SQDATFSPGSEQAEKSPGPIVSR 23 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 SQDATFS(0.002)PGS(0.01)EQAEKS(0.837)PGPIVS(0.15)R;SQDATFS(0.001)PGS(0.007)EQAEKS(0.958)PGPIVS(0.034)R;SQDATFS(0.001)PGSEQAEKS(0.991)PGPIVS(0.007)R;SQDATFS(0.001)PGSEQAEKS(0.992)PGPIVS(0.006)R ;;; 100.24 4.46E-05 403835000 5207.7 5558.6 4922.21 5010.9 6113 5212.8 4983.8 6392.3 5502.9 5495.8 TRUE FALSE FALSE 4597.2613 5729.853877 5188.319561 5215.266161 5662.056169 5113.374525 5176.026835 7119.973593 5276.068133 5463.110737 0.841509814 1.048826237 0.949700603 0.954633067 1.036416145 0.935982222 0.94745047 1.303281946 0.965762619 1 12.41550695 -4.261461338 8.180926987 0.944774829 1.305884857 0.748298478 0.057946152 0.039496936 35.10049366 0.009910971 0.078325765 5.48E-05 4.261461338 0.361110028 VTSGGVSES(ph)PSGFSK ddPTM_HeLa_CUDC101_4h_R1 2 VTSGGVSESPSGFSK 15 0 E7EPP6;O14757-2;O14757-3;O14757 E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 1 0 VTSGGVS(0.029)ES(0.873)PS(0.097)GFSK;VTSGGVS(0.003)ES(0.497)PS(0.497)GFS(0.004)K ; 171.78 6.36E-07 46103000 5222.4 4212.7 3780.7 3973.2 3993.1 4090.9 4649.4 17023.3 4763.2 4551.8 TRUE FALSE FALSE 4610.238189 4342.488294 3985.096078 4135.24427 3698.536968 4012.872898 4828.728915 18961.16366 4566.85888 4524.725691 1.018898935 0.9597241 0.880737607 0.91392154 0.817405788 0.886876503 1.067187106 4.190566447 1.009311766 1 12.14361462 -4.26145019 5.810839595 0.969547407 4.288003878 0.995154944 0.067846697 0.007519933 1.117020608 0.011256545 0.098302248 5.48E-05 4.26145019 3.318456471 up KLDVEEPDSANSS(ph)FYSTR ddPTM_HeLa_CUDC101_4h_R1 1 KLDVEEPDSANSSFYSTR 18 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 KLDVEEPDSANS(0.219)S(0.78)FYS(0.001)TR 191.44 4.32E-12 33975000 4459.6 3454.5 3483.1 3477.3 3198.3 4047.5 3562 1930.7 3159.1 3648.3 TRUE FALSE FALSE 3936.852448 3560.92905 3671.406922 3619.119324 2962.367781 3970.300681 3699.387533 2150.483084 3028.880561 3626.599749 1.085549198 0.981891936 1.012355147 0.997937345 0.816844423 1.094772226 1.020070531 0.592975027 0.835184683 1 11.82440182 -4.261446501 13.29510138 1.020259788 0.592832311 0.585305044 0.093748997 0.02097942 666.6966532 0.010462349 0.08044891 5.48E-05 4.261446501 -0.427427477 ARVSS(ph)GYVPPPVATPFSSK ddPTM_HeLa_CUDC101_4h_R1 1 ARVSSGYVPPPVATPFSSK 19 1 Q15942-2;Q15942;H7C3R3 Q15942-2 ZYX Zyxin 1 0 ARVS(0.339)S(0.434)GY(0.228)VPPPVATPFSSK 86.006 0.0025948 35740000 3939.2 3787.9 2799.6 3078.4 5026.6 4075.9 3443.9 1625.7 3518.7 3518.8 TRUE FALSE FALSE 3477.452947 3904.600709 2950.954844 3203.950458 4655.797732 3998.158998 3576.732377 1810.763117 3373.657697 3497.870021 0.994162998 1.116279532 0.843643368 0.915971845 1.331037947 1.143026749 1.022545822 0.51767593 0.964489154 1 11.77226097 -4.261446147 14.01387199 1.022710465 0.517566688 0.591196604 0.129025432 0.028510624 1476.735554 0.017773717 0.136608267 5.48E-05 4.261446147 -0.505143777 EGSQGELT(ph)PANSQSR ddPTM_HeLa_CUDC101_4h_R1 2 EGSQGELTPANSQSR 15 0 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QQX0 C9JFE4 GPS1 COP9 signalosome complex subunit 1 1 0 EGSQGELT(0.996)PANS(0.004)QSR;EGSQGELT(1)PANSQSR ; 213.02 4.89E-23 177001000 4931.4 4054.3 4102.3 3735.1 4528 3839.9 3961.1 5361.3 4279.7 3955.6 TRUE FALSE FALSE 4353.348768 4179.208177 4324.082747 3887.433522 4193.978461 3766.660305 4113.880954 5971.608721 4103.288955 3932.071915 1.107138644 1.06285141 1.099695743 0.988647615 1.066607771 0.95793271 1.046237465 1.518692651 1.04354372 1 11.94107399 -4.261441662 15.16699305 1.046167444 1.518743803 0.908972587 0.04528923 0.011451269 1281.465244 0.007208516 0.055388728 5.48E-05 4.261441662 0.47257636 PLPEPSEQEGES(ph)VKASQEPSPKPGTEVIPAAPR ddPTM_HeLa_CUDC101_4h_R1 1 PLPEPSEQEGESVKASQEPSPKPGTEVIPAAPR 33 2 I3L4I0;I3L1Y9;Q96CP2 I3L4I0 FLYWCH2 FLYWCH family member 2 1 0 PLPEPS(0.125)EQEGES(0.771)VKAS(0.087)QEPS(0.014)PKPGT(0.003)EVIPAAPR 58.398 0.00041191 24598000 875.31 872.63 748.28 869.71 808.45 801.71 882.15 10851 872.46 1003.8 TRUE FALSE FALSE 772.7074887 899.514696 788.7342802 905.180533 748.8122542 786.4187175 916.174821 12086.23398 836.4968295 997.829353 0.774388413 0.901471472 0.790450068 0.907149635 0.750441197 0.788129468 0.918167839 12.112526 0.838316519 1 9.962649299 -4.261441416 9.035088364 0.86909476 12.16136291 0.999506294 0.075079075 0.001536728 2.527862561 0.013457246 0.105145174 5.48E-05 4.261441416 11.29226815 AADAEAEVAS(ph)LNRR ddPTM_HeLa_CUDC101_4h_R1 2 AADAEAEVASLNRR 14 1 J3KN67;A0A2R2Y2Q3;A0A494C0P6;P06753 J3KN67 TPM3 Tropomyosin alpha-3 chain 1 0 AADAEAEVAS(1)LNRR;AADAEAEVAS(1)LNRR ; 88.951 0.0084652 18499700 5149 4186.9 4602.6 4751 5677.9 5035.7 4780.7 5420.4 5151.9 5502.8 TRUE FALSE FALSE 4545.442025 4315.893426 4851.430478 4944.766316 5259.052629 4939.652413 4965.0932 6037.436426 4939.536501 5470.069101 0.830966107 0.789001628 0.886904788 0.903967797 0.961423436 0.903032909 0.907683817 1.10372215 0.903011719 1 12.41734334 -4.261440075 13.53844711 0.907627584 1.103776407 0.538428663 0.056445551 0.045015556 1676.878575 0.010429932 0.080201846 5.48E-05 4.261440075 0.196148823 SESTDSLGGLS(ph)PSEVTAIQCK ddPTM_HeLa_CUDC101_4h_R1 2 SESTDSLGGLSPSEVTAIQCK 21 0 O60318 O60318 MCM3AP Germinal-center associated nuclear protein 1 0 S(0.006)ES(0.006)T(0.006)DS(0.007)LGGLS(0.943)PS(0.024)EVT(0.007)AIQCK;S(0.004)ES(0.004)T(0.016)DS(0.017)LGGLS(0.949)PS(0.01)EVT(0.001)AIQCK ; 68.361 0.001668 4926000 4050.9 3391.8 3045.2 3087 3956.8 3444.9 3252.8 2119.25 3590.6 3202.7 TRUE FALSE FALSE 3576.059643 3496.297338 3209.832723 3212.901203 3664.914747 3379.194272 3378.261586 2360.496854 3442.593948 3183.650198 1.123257714 1.098203986 1.008224058 1.009187883 1.151167534 1.061421344 1.061128383 0.741443534 1.08133549 1 11.63646611 -4.261437833 9.917154124 1.061941458 0.740624863 0.805071214 0.047872318 0.028676998 88.18248655 0.007895268 0.061255693 5.48E-05 4.261437833 -0.321316595 LPAEGPEPEADS(ph)QEQVHPK ddPTM_HeLa_CUDC101_4h_R1 2 LPAEGPEPEADSQEQVHPK 19 0 O75459 O75459 PAGE1 P antigen family member 1 1 0 LPAEGPEPEADS(1)QEQVHPK;LPAEGPEPEADS(1)QEQVHPK ; 160.2 1.09E-05 26921000 4245.1 3324.9 3362.9 3587.1 4062.2 4524 4264.2 9473.5 4359.2 5750.1 TRUE FALSE FALSE 3747.495813 3427.336228 3544.708546 3733.397443 3762.539599 4437.712237 4428.671622 10551.92495 4179.511931 5715.898149 0.655626765 0.599614643 0.620149004 0.653160246 0.658258685 0.776380565 0.774798904 1.84606595 0.731208258 1 12.48076449 -4.261437621 10.21007365 0.772521947 1.848364881 0.883381361 0.12147025 0.024931098 94.1801285 0.023697341 0.183558399 5.48E-05 4.261437621 1.075842934 MPETVPQEEMPGPPLNSES(ph)GEEAPTGR ddPTM_HeLa_CUDC101_4h_R1 2 MPETVPQEEMPGPPLNSESGEEAPTGR 27 0 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 MPETVPQEEMPGPPLNS(0.099)ES(0.9)GEEAPT(0.001)GR;MPETVPQEEMPGPPLNS(0.14)ES(0.853)GEEAPT(0.006)GR ; 152.34 1.53E-11 16428500 3907 3849.1 3809.2 3364.7 3942.2 3646.5 3561.6 4260.8 3892.5 3913.7 TRUE FALSE FALSE 3449.027383 3967.686209 4015.136874 3501.927009 3651.39176 3576.949088 3698.972105 4745.832249 3732.049502 3890.421138 0.886543451 1.019860336 1.03205713 0.900140855 0.938559511 0.919424649 0.950789638 1.219876224 0.959291904 1 11.92571062 -4.261431276 19.50423544 0.950838676 1.219876421 0.741623991 0.046573046 0.025096671 32204.11772 0.007573262 0.058210081 5.48E-05 4.261431276 0.269037745 IPVEGPLS(ph)PSRGDFPK ddPTM_HeLa_CUDC101_4h_R1 3 IPVEGPLSPSRGDFPK 16 1 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 IPVEGPLS(0.991)PS(0.009)RGDFPK;IPVEGPLS(0.868)PS(0.132)RGDFPK;IPVEGPLS(0.997)PS(0.003)RGDFPK ;; 94.544 0.0069374 88356000 4946.12 4657.05 4320.66 4547.31 5410.23 3990.51 4404.3 4949.87 4885.69 4770.63 TRUE FALSE FALSE 4366.343311 4800.528191 4554.247949 4732.768957 5011.128112 3914.39767 4574.175326 5513.343193 4684.29979 4742.254081 0.920731626 1.012288272 0.960355112 0.99799987 1.056697517 0.825429765 0.964557202 1.162599704 0.987779168 1 12.21135725 -4.261422455 19.58813577 0.964632018 1.162600692 0.487986727 0.059135507 0.05633412 49044.82991 0.008067958 0.062017009 5.48E-05 4.261422455 0.197968675 (ac)MESQEPTES(ph)SQNGK ddPTM_HeLa_CUDC101_4h_R1 1 MESQEPTESSQNGK 14 0 A6NFX8;Q9UKK9;C9JYY9;A6NCQ0;A6NJU6 A6NFX8 NUDT5 ADP-sugar pyrophosphatase 1 0 MES(0.004)QEPT(0.002)ES(0.875)S(0.119)QNGK 95.428 0.034465 3992700 484.93 467.74 397.53 401.97 401.35 637.16 485.3 2141.6 486.64 611.65 TRUE FALSE FALSE 428.0872405 482.150515 419.0216743 418.3640741 371.7432101 625.0072346 504.0181836 2385.391087 466.5804932 608.0118786 0.7040771 0.792995223 0.689166921 0.688085363 0.611407808 1.027952342 0.82896108 3.923263955 0.767387134 1 9.247955699 -4.261418472 10.21365766 0.82309026 3.929892177 0.98083946 0.131304981 0.007908846 29.87529099 0.021651646 0.167786448 5.48E-05 4.261418472 3.106801916 IDFDSVSSIMASS(ph)Q ddPTM_HeLa_CUDC101_4h_R1 4 IDFDSVSSIMASSQ 14 0 A0A087WVB9;K7ERF1;Q9UBQ5;K7EK53 A0A087WVB9 EIF3K Eukaryotic translation initiation factor 3 subunit K 1 0 IDFDSVSSIMAS(0.202)S(0.798)Q;IDFDSVSSIMAS(0.008)S(0.992)Q;IDFDSVSSIMAS(0.253)S(0.747)Q;IDFDSVSSIMAS(0.318)S(0.682)Q ;;; 175.21 2.62E-07 28523200 7197.44 5531.53 5227.59 4931.84 7003.39 6547.83 5918.54 14478.8 6490.69 6163.62 TRUE FALSE FALSE 6353.766994 5701.949883 5510.209328 5132.981752 6486.763872 6422.941052 6146.82007 16127.00807 6223.141011 6126.958514 1.037018119 0.930633016 0.899338443 0.837769954 1.058724954 1.048308233 1.003241667 2.632139263 1.015698245 1 12.58095537 -4.261412168 8.903614866 0.995994368 2.639837029 0.981025532 0.068853969 0.008204699 12.26426452 0.010270283 0.0804086 5.48E-05 4.261412168 1.643842661 EGSQGELTPANS(ph)QSR ddPTM_HeLa_CUDC101_4h_R1 2 EGSQGELTPANSQSR 15 0 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QQX0 C9JFE4 GPS1 COP9 signalosome complex subunit 1 1 0 EGSQGELTPANS(0.812)QS(0.188)R;EGSQGELTPANS(0.993)QS(0.007)R ; 163.91 3.55E-05 13884000 1903.45 1367.46 1333.44 1144.87 1471.75 1468.9 1588.75 17310.8 1241.87 1245.07 TRUE FALSE FALSE 1680.330476 1409.589822 1405.5298 1191.562747 1363.181935 1440.88318 1650.02862 19281.3915 1190.679593 1237.664268 1.35766259 1.138911301 1.13563091 0.96275119 1.101414955 1.164195507 1.333179491 15.57885445 0.962037625 1 10.2734043 -4.261407386 7.231607721 1.151183332 15.76457124 0.999256668 0.118246393 0.002273742 1.002329688 0.019928929 0.161349389 5.48E-05 4.261407386 14.61338791 DGQVINETS(ph)QHHDDLE ddPTM_HeLa_CUDC101_4h_R1 3 DGQVINETSQHHDDLE 16 0 P08670 P08670 VIM Vimentin 1 0 DGQVINET(0.317)S(0.683)QHHDDLE;DGQVINET(0.265)S(0.735)QHHDDLE;DGQVINET(0.208)S(0.792)QHHDDLE ;; 132.62 0.00028785 574921000 24550.1 20087.9 19453.7 20516.5 22482.6 22165.5 20915.2 12895.9 22495.2 22614.8 TRUE FALSE FALSE 21672.37449 20706.78439 20505.42587 21353.25155 20824.10339 21742.73002 21721.90627 14363.91713 21567.93833 22480.28616 0.964061326 0.921108577 0.912151461 0.949865646 0.926327327 0.967190981 0.966264669 0.638956151 0.959415649 1 14.45637278 -4.261406521 23.42443274 0.96597457 0.638955974 0.915670008 0.028190884 0.259411717 182791.7041 0.004924702 0.037915328 5.48E-05 4.261406521 -0.327018596 HGGS(ph)PQPLATTPLS(ph)QEPVNPPS(ph)EASPTR ddPTM_HeLa_CUDC101_4h_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 HGGS(1)PQPLAT(0.1)T(0.333)PLS(0.567)QEPVNPPS(0.48)EAS(0.479)PT(0.041)R 109.26 2.54E-10 21241000 1192.6 901.03 481.44 836 840.57 1031.4 957.48 3330.6 1055.7 1138.5 TRUE FALSE FALSE 1052.805236 928.7896663 507.4681027 870.0956935 778.5628258 1011.727763 994.4103243 3709.742041 1012.183599 1131.728151 0.930263363 0.820682657 0.44840106 0.768820403 0.687941556 0.893967126 0.878665361 3.277944475 0.894369905 1 10.14431174 -4.261404892 24.49565477 0.880999776 3.277945129 0.954669151 0.160491686 0.355857294 251336.7213 0.02601266 0.200270854 5.48E-05 4.261404892 2.396945354 ELSQNT(ph)DESGLNDEAIAK ddPTM_HeLa_CUDC101_4h_R1 1 ELSQNTDESGLNDEAIAK 18 0 A0A1W2PP02;P35251-2;P35251 A0A1W2PP02;P35251-2 RFC1 Replication factor C subunit 1 1 0 ELS(0.033)QNT(0.886)DES(0.081)GLNDEAIAK 116.71 0.00083317 9526300 926.26 505.88 449.13 723.95 769.78 832.08 787.67 5383.3 742.77 828.19 TRUE FALSE FALSE 817.6852069 521.4655632 473.4113263 753.4758102 712.994863 816.2094603 818.0506958 5996.113112 712.1527062 823.263889 0.993223701 0.633412409 0.575042016 0.915230001 0.866058712 0.991431145 0.993667652 7.283342792 0.865035763 1 9.685211136 -4.261398978 7.529038474 0.927415392 7.351759742 0.993764061 0.152351026 0.005903353 3.245879723 0.023866322 0.191561918 5.48E-05 4.261398978 6.42434435 TSS(ph)VLGMSVESAPAVEEEKGEELEQK ddPTM_HeLa_CUDC101_4h_R1 2 TSSVLGMSVESAPAVEEEKGEELEQK 26 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.31)S(0.31)S(0.377)VLGMS(0.002)VES(0.001)APAVEEEKGEELEQK;T(0.261)S(0.096)S(0.489)VLGMS(0.124)VES(0.03)APAVEEEKGEELEQK ; 88.721 8.81E-06 40108600 3126.5 2123.17 2367.55 1986.89 2477.87 2667.47 2726 4484.1 2731.27 3035.52 TRUE FALSE FALSE 2760.016409 2188.582351 2495.546914 2067.923962 2295.082467 2616.592454 2831.142733 4994.551819 2618.685895 3017.464592 0.914680628 0.725305065 0.827034366 0.685318385 0.760599635 0.867149348 0.938252181 1.655214723 0.867843123 1 11.55912113 -4.261383425 4.720008545 0.894071734 1.699648744 0.841922338 0.103654109 0.067942219 4.17206434 0.018003424 0.179687962 5.48E-05 4.261383425 0.80557701 TPHS(ph)PPLAK ddPTM_HeLa_CUDC101_4h_R1 2 TPHSPPLAK 9 0 Q8IZW8 Q8IZW8 TNS4 Tensin-4 1 0 T(0.001)PHS(0.999)PPLAK;TPHS(1)PPLAK ; 84.31 0.023535 185503000 12055.5 10809.7 11141.7 10964.9 12052.6 10642.2 10652 13542.5 11523.9 11425.1 TRUE FALSE FALSE 10642.37256 11142.73404 11744.054 11412.09602 11163.50371 10439.21777 11062.85121 15084.12346 11048.87996 11357.143 0.937064239 0.981121225 1.034067635 1.004838631 0.98295 0.919176396 0.974087516 1.328161798 0.972857343 1 13.47131234 -4.26138302 23.78890323 0.974633901 1.328161958 0.918993769 0.031128517 0.510184481 214194.4752 0.004996081 0.038576018 5.48E-05 4.26138302 0.353528057 S(ph)TEFPR ddPTM_HeLa_CUDC101_4h_R1 2 STEFPR 6 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 S(0.959)T(0.041)EFPR;S(0.973)T(0.027)EFPR ; 98.629 0.031083 54485000 7995.7 6574.3 7306 6449.9 6561.6 5980.9 5353.7 2809 6536.8 8401.7 TRUE FALSE FALSE 7058.456167 6776.846391 7700.984459 6712.954801 6077.563841 5866.824297 5560.194002 3128.765206 6267.350337 8351.726315 0.845149362 0.811430611 0.922082953 0.803780506 0.727701509 0.702468457 0.665753856 0.374624968 0.750425732 1 13.02785872 -3.902265827 0.336775748 0.951171626 7.99E-29 0.705780348 0.087044997 2.345994902 0.15660488 0.023965626 0.952110443 0.000125237 3.902265827 -0.951171626 down QEEMNS(ph)QQEEEEMETDAR ddPTM_HeLa_CUDC101_4h_R1 2 QEEMNSQQEEEEMETDAR 18 0 E9PPJ0;Q13435;E9PJ04;H0YCG1 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 QEEMNS(1)QQEEEEMETDAR;QEEMNS(0.865)QQEEEEMET(0.135)DAR ; 188.1 2.27E-11 10576300 1697.1 1517.94 1376.36 1392.91 1354.86 1594.98 1485.31 4225.1 1358.03 1580 TRUE FALSE FALSE 1498.168511 1564.705932 1450.770185 1449.71889 1254.914677 1564.558414 1542.598904 4706.068306 1302.051429 1570.60209 0.953881649 0.996245925 0.923703206 0.923033848 0.799002297 0.996152001 0.982170414 2.996346647 0.829014196 1 10.61710201 -4.261380327 7.464262607 0.960378259 3.019142603 0.987035311 0.07086408 0.006555501 3.434456752 0.008401127 0.067573121 5.48E-05 4.261380327 2.058764344 REDS(ph)PGPEVQPMDK ddPTM_HeLa_CUDC101_4h_R1 5 REDSPGPEVQPMDK 14 1 O75382-3;O75382-2;O75382;E9PMW5;E9PMK8 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK;REDS(1)PGPEVQPMDK ;;;; 144.4 0.00080526 201867000 19803.8 18628.2 18891.1 17951.5 19629.7 18976.2 17918.9 19578 19791.7 19490.8 TRUE FALSE FALSE 17482.42858 19202.11276 19912.41001 18683.63976 18181.65614 18614.2606 18610.03798 21806.68038 18975.87775 19374.86785 0.902325049 0.991083547 1.0277443 0.964323468 0.938414459 0.960742584 0.96052464 1.125513761 0.979406822 1 14.24189885 -4.261359613 23.24768872 0.960877636 1.125513789 0.655148121 0.033470068 1.353412702 392363.9735 0.005898464 0.045591105 5.48E-05 4.261359613 0.164636153 AMSTSQS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 AMSTSQSPTR 10 0 Q15776 Q15776 ZKSCAN8 Zinc finger protein with KRAB and SCAN domains 8 1 0 AMSTSQS(0.993)PT(0.007)R 151.79 0.00036832 13514000 3598.1 2651.5 1529.1 2964 2885 2359.6 2366 615.19 1610.3 1788.3 TRUE FALSE FALSE 3176.336172 2733.189572 1611.767771 3084.884732 2672.179298 2314.594561 2457.257413 685.2207429 1543.922752 1777.663112 1.786804345 1.537518303 0.906677852 1.735359591 1.50319781 1.302043422 1.382296452 0.38546153 0.868512567 1 10.79576623 -4.261345332 8.427400354 1.387686557 0.379171603 0.447305454 0.312171625 0.063512736 67.21837876 0.045731816 0.360769583 5.48E-05 4.261345332 -1.008514955 QSS(ph)FEIPDDVPLPAGWEMAK ddPTM_HeLa_CUDC101_4h_R1 2 QSSFEIPDDVPLPAGWEMAK 20 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 QS(0.163)S(0.837)FEIPDDVPLPAGWEMAK;QS(0.177)S(0.823)FEIPDDVPLPAGWEMAK ; 130.14 9.17E-05 8136300 5037.3 4037.9 3847.6 3493.2 4333 4437.9 4731.2 7983.6 5443.5 5174.1 TRUE FALSE FALSE 4446.83533 4162.302913 4055.612894 3635.667795 4013.363223 4353.254452 4913.683969 8892.420753 5219.116626 5143.324223 0.864583903 0.809263179 0.788519782 0.706871206 0.780305314 0.846389273 0.955351783 1.72892479 1.014736073 1 12.32848539 -4.261342345 4.077438925 0.883168649 1.801624083 0.883951203 0.094237879 0.066116215 2.346070169 0.015573983 0.177966232 5.48E-05 4.261342345 0.918455434 SLSDSESDDSK ddPTM_HeLa_CUDC101_4h_R1 2 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 0 0 ; ; 223.31 1.19E-31 24308000 5667.3 2265.74 5331.7 5135.7 3583.8 3193.2 3675.3 2436.84 5585.2 6749.5 FALSE FALSE TRUE 5002.987685 2335.544764 5619.94783 5345.156044 3319.430214 3132.29503 3817.057552 2714.240016 5354.975692 6709.353674 0.745673567 0.348102795 0.837628794 0.796672273 0.494746644 0.466854958 0.568915836 0.404545676 0.798135849 1 12.71195808 -12.35637679 0.073248745 2.375942707 2.57E-09 0.416373555 0.157636806 80.74243276 0.580777824 20.77714801 4.036229398 4.40E-13 12.35637679 -2.375942704 SLSEINKPNFYNNDFDDDFSHR ddPTM_HeLa_CUDC101_4h_R1 1 SLSEINKPNFYNNDFDDDFSHR 22 1 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 0 0 47.155 0.036192 13614000 1395 1344.5 1467.8 1398.3 1815.4 1855.1 1932.2 1797.9 1779.2 2157.7 FALSE FALSE TRUE 1231.480215 1385.922451 1547.153708 1455.328718 1681.481559 1819.717058 2006.725601 2002.565669 1705.860623 2144.865904 0.574152544 0.646158088 0.721328874 0.678517345 0.783956496 0.848405979 0.9355949 0.933655416 0.795322738 1 11.06667174 -5.001969829 2.367842774 0.766640199 0.937301315 0.326911844 0.108160536 0.472169096 5.177655815 0.024414498 0.089958685 9.95E-06 5.001969829 0.170661116 EMPQDLRS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 EMPQDLRSPAR 11 1 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 0 EMPQDLRS(1)PAR;EMPQDLRS(1)PAR ; 98.337 0.0086626 107144000 6488.5 5984.5 5503.4 6311.2 6213.4 6109 5782.1 4012.5 6000.4 6316.9 TRUE FALSE FALSE 5727.927866 6168.875352 5800.930451 6568.598015 5755.049861 5992.481003 6005.117534 4469.266781 5753.060972 6279.326798 0.912188209 0.982410305 0.923814071 1.046067234 0.916507461 0.954319021 0.956331423 0.711742982 0.916190725 1 12.61639418 -4.261330707 6.996699275 0.959805802 0.708059361 0.760529815 0.041155263 0.040058369 14.79477247 0.005796303 0.047376736 5.48E-05 4.261330707 -0.251746441 QAPELSLS(ph)SQDLELVTKEDPK ddPTM_HeLa_CUDC101_4h_R1 1 QAPELSLSSQDLELVTKEDPK 21 1 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 QAPELS(0.152)LS(0.369)S(0.369)QDLELVT(0.11)KEDPK 46.962 0.039336 4207400 1959.9 2024.8 1880.1 1700.2 2301.3 1896.3 1796.9 2781.2 1766.5 1913.9 TRUE FALSE FALSE 1730.163493 2087.181688 1981.743893 1769.541505 2131.537684 1860.131237 1866.207035 3097.800566 1693.684122 1902.516038 0.909408099 1.097063913 1.041643725 0.93010596 1.1203783 0.977721712 0.980915271 1.628265152 0.890233821 1 10.8936929 -4.261325939 24.67570867 0.98299576 1.628265363 0.873036337 0.072431782 1.821302942 395572.6781 0.009874066 0.076133925 5.48E-05 4.261325939 0.645269602 SDPLGS(ph)TQDHALSQESSEPGCR ddPTM_HeLa_CUDC101_4h_R1 1 SDPLGSTQDHALSQESSEPGCR 22 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 0 SDPLGS(0.557)T(0.442)QDHALSQESSEPGCR 102.39 6.60E-05 5774500 405.32 249.97 303.85 350.77 351.53 581.85 349.93 3006.4 466.02 300.21 TRUE FALSE FALSE 357.809004 257.6712794 320.2770501 365.0759168 325.5983322 570.7521807 363.4269173 3348.636424 446.8104584 298.4243376 1.198994046 0.863439227 1.073226978 1.223344985 1.091058239 1.912552392 1.217819298 11.22105674 1.497231968 1 8.221221387 -4.261317259 7.966645577 1.14536312 11.30455424 0.990835914 0.28813284 0.005534946 4.189737295 0.037654263 0.299606619 5.48E-05 4.261317259 10.15919112 TLLISSLS(ph)PALPAEHLEDR ddPTM_HeLa_CUDC101_4h_R1 2 TLLISSLSPALPAEHLEDR 19 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 0 TLLIS(0.006)S(0.031)LS(0.963)PALPAEHLEDR;TLLISS(0.004)LS(0.996)PALPAEHLEDR ; 131.33 2.58E-05 9763400 5867.9 5241.9 4815.4 4626.9 6204.7 4637.3 4614.7 2463.6 5921 5982.8 TRUE FALSE FALSE 5180.073657 5403.396726 5075.73509 4815.604981 5746.991643 4548.851229 4792.690525 2744.046266 5676.933874 5947.21404 0.871008446 0.908559317 0.853464337 0.809724511 0.966333413 0.764870946 0.805871538 0.461400287 0.954553483 1 12.53799828 -3.902023568 0.875973063 0.923435063 1.47E-34 0.790591883 0.066564363 1.36800491 0.50878701 0.011617981 1.404210409 0.000125307 3.902023568 -0.923435063 down NDSVIVADQTPT(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 4 NDSVIVADQTPTPTR 15 0 E9PEK8;H7C2N6;B8ZZU6;E9PBF9;P15336-3;P15336-7;P15336-5;P15336 E9PEK8 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 0 NDSVIVADQT(0.001)PT(0.922)PT(0.077)R;NDSVIVADQT(0.113)PT(0.882)PT(0.005)R;NDSVIVADQT(0.002)PT(0.958)PT(0.04)R;NDSVIVADQT(0.003)PT(0.993)PT(0.003)R ;;; 198.51 1.16E-15 31398700 7940.8 5463.8 5350 5039.2 6127.6 6749.3 6156.9 10532.3 6364.7 6349.2 TRUE FALSE FALSE 7009.991461 5632.133202 5639.237183 5244.720357 5675.579156 6620.568348 6394.373695 11731.25446 6102.344372 6311.434676 1.11068114 0.892369721 0.893495294 0.83098703 0.89925341 1.048979937 1.013141072 1.858730235 0.966871193 1 12.62375227 -4.261307887 7.472031441 1.004545985 1.868264094 0.897522063 0.08989142 0.028163787 14.82103858 0.015122748 0.121765666 5.48E-05 4.261307887 0.863718109 MTIS(ph)QQEFGR ddPTM_HeLa_CUDC101_4h_R1 2 MTISQQEFGR 10 0 Q5VWC4;H0Y3Y9;P55036 Q5VWC4 PSMD4 26S proteasome non-ATPase regulatory subunit 4 1 0 MT(0.229)IS(0.771)QQEFGR;MT(0.004)IS(0.996)QQEFGR ; 125.36 0.0035266 68902000 1240.7 1189.41 1111.09 1083.42 1328.09 1301.33 1601.42 19719.4 552.76 1250.04 TRUE FALSE FALSE 1095.267027 1226.054312 1171.158886 1127.606551 1230.119447 1276.509298 1663.187306 21964.17679 529.9749988 1242.604706 0.881428359 0.986680886 0.942503179 0.907453951 0.989952348 1.027285099 1.338468539 17.6759163 0.426503293 1 10.27915171 -4.261298332 6.21955528 0.958011573 18.07237802 0.998812509 0.173121497 0.001234335 0.252083559 0.010432967 0.088641013 5.48E-05 4.261298332 17.11436644 KADTTTPTTS(ph)AITASR ddPTM_HeLa_CUDC101_4h_R1 1 KADTTTPTTSAITASR 16 1 Q15059;Q15059-2 Q15059 BRD3 Bromodomain-containing protein 3 1 0 KADTT(0.011)T(0.031)PT(0.312)T(0.112)S(0.518)AIT(0.015)AS(0.001)R 85.054 0.0064244 26503000 3671.9 3383.8 3183.5 3584.4 3876.7 3825.2 3394.8 1574.1 3398.2 3732.1 TRUE FALSE FALSE 3241.485448 3488.050867 3355.60964 3730.587325 3590.723564 3752.240683 3525.738573 1753.289181 3258.124758 3709.901303 0.873738998 0.940200448 0.904501054 1.005575895 0.967875766 1.011412535 0.95035913 0.472597257 0.878224107 1 11.85716509 -4.26128658 24.87889117 0.948277374 0.472597108 0.899290284 0.04772616 2.860417493 465269.9873 0.007576469 0.058629771 5.48E-05 4.26128658 -0.475680266 EST(ph)GNMVTGQTVCK ddPTM_HeLa_CUDC101_4h_R1 1 ESTGNMVTGQTVCK 14 0 Q15021;E7EN77 Q15021 NCAPD2 Condensin complex subunit 1 1 0 ES(0.366)T(0.634)GNMVTGQTVCK 236.75 7.74E-43 17938000 4484.9 3695.3 3355.6 3401 3661.2 3798.5 3421.5 1168.5 2878.2 3106.3 TRUE FALSE FALSE 3959.186821 3809.147813 3537.013886 3539.70748 3391.12057 3726.049941 3553.468401 1301.517317 2759.559378 3087.823589 1.282193333 1.233602796 1.145471489 1.146343817 1.098223545 1.206691326 1.150800329 0.421499894 0.893690749 1 11.59237462 -4.261282953 24.82745355 1.147553555 0.421499665 0.791459272 0.10848861 3.66285613 580770.188 0.014819288 0.11489821 5.48E-05 4.261282953 -0.72605389 ADDPLRLDQELQQPQT(ph)QEK ddPTM_HeLa_CUDC101_4h_R1 1 ADDPLRLDQELQQPQTQEK 19 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ADDPLRLDQELQQPQT(1)QEK 109.85 0.00037819 36274000 639.19 646.38 589.36 570.76 566.96 727.83 1047.7 16017 0 794.12 TRUE FALSE FALSE 564.2651171 666.2942017 621.2225843 594.0380598 525.1364903 713.9478554 1088.11014 17840.31054 0 789.3965389 0.714805664 0.844055134 0.78695884 0.752521744 0.665237893 0.904422328 1.378407538 22.59993509 0 1 9.624606384 -4.261282453 6.093856328 0.844443848 23.15653527 0.998132731 0.283173556 0.00183873 0.340618441 0.019707129 0.168860415 5.48E-05 4.261282453 22.31209142 QIPS(ph)AEDLETDGGGPGQVVDDGLEHR ddPTM_HeLa_CUDC101_4h_R1 3 QIPSAEDLETDGGGPGQVVDDGLEHR 26 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;Q8WUI4-10 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 QIPS(1)AEDLETDGGGPGQVVDDGLEHR;QIPS(1)AEDLETDGGGPGQVVDDGLEHR;QIPS(0.999)AEDLET(0.001)DGGGPGQVVDDGLEHR ;; 162.14 1.26E-11 15489000 4090.5 3585.36 3322.3 3266.56 3217.11 3584.37 3423.74 6497.51 4055.41 3424.1 TRUE FALSE FALSE 3611.017791 3695.820692 3501.913587 3399.784436 2979.790205 3516.004114 3555.794799 7237.160275 3888.244283 3403.733301 1.060899157 1.08581383 1.028844882 0.998839843 0.875447616 1.032984609 1.044674916 2.126241875 1.142346929 1 11.73290228 -4.261279977 6.313667934 1.021118046 2.15101513 0.961906405 0.065442971 0.013798884 3.030099384 0.007852358 0.066352107 5.48E-05 4.261279977 1.129897085 NTS(ph)PSLGESR ddPTM_HeLa_CUDC101_4h_R1 1 NTSPSLGESR 10 0 C9J052;Q9NSU2-2;Q9NSU2;Q9NSU2-1 C9J052 TREX1 Three-prime repair exonuclease 1 1 0 NT(0.198)S(0.759)PS(0.043)LGESR 130.44 0.0022794 30830000 2920.7 2621.9 2574.6 2631 2645 2656.9 2528.8 1412.9 2456.4 2655.4 TRUE FALSE FALSE 2578.339973 2702.677631 2713.790664 2738.303552 2449.88362 2606.224059 2626.336663 1573.738825 2355.146152 2639.605563 0.97678987 1.023894505 1.028104616 1.037391189 0.928124889 0.987353602 0.994973151 0.596202269 0.892234122 1 11.36610665 -4.261276288 25 0.993110209 0.596202152 0.877940362 0.043454109 2.138537767 327528.2405 0.004114138 0.031901367 5.48E-05 4.261276288 -0.396908057 SSSLPAS(ph)QNNLRH ddPTM_HeLa_CUDC101_4h_R1 1 SSSLPASQNNLRH 13 1 H3BU49;Q9Y2Y0-2;Q9Y2Y0 H3BU49 ARL2BP ADP-ribosylation factor-like protein 2-binding protein 1 0 SSSLPAS(1)QNNLRH 98.654 0.0056278 12897000 1710.4 1362 1323.8 1268 1817.9 2229 1754.2 18769 0 1469 TRUE FALSE FALSE 1509.909505 1403.961606 1395.368632 1319.714521 1683.797139 2186.485539 1821.860082 20905.58709 0 1460.262323 1.033998811 0.961444792 0.955560251 0.903751675 1.153078534 1.497323806 1.247625206 14.31632301 0 1 10.51201184 -4.261269959 6.830667225 1.046602826 14.53432631 0.991656184 0.367189251 0.003221504 1.049209814 0.024203033 0.199332673 5.48E-05 4.261269959 13.48772349 TEELIES(ph)PKLES(ph)SEGEIIQTVDR ddPTM_HeLa_CUDC101_4h_R1 1 TEELIESPKLESSEGEIIQTVDR 23 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 0 TEELIES(0.998)PKLES(0.615)S(0.386)EGEIIQT(0.001)VDR 63.728 0.0076411 10680000 5693.2 5186.8 5437.5 4929 4930.5 5863.5 5390.6 7028.8 6458.6 6523 TRUE FALSE FALSE 5025.851726 5346.59916 5731.467698 5130.025925 4566.786838 5751.663507 5598.517248 7828.930181 6192.373774 6484.200906 0.775091919 0.824557912 0.883912726 0.791157769 0.70429447 0.887027344 0.863408973 1.207385504 0.954994126 1 12.66271308 -4.261261668 24.01004841 0.865094703 1.207385606 0.620230473 0.082575096 5.378824425 725654.2132 0.01425607 0.110385978 5.48E-05 4.261261668 0.342290903 GIINDDEDDEDLMMAS(ph)GRPR ddPTM_HeLa_CUDC101_4h_R1 3 GIINDDEDDEDLMMASGRPR 20 1 O75717;O75717-2 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 0 GIINDDEDDEDLMMAS(1)GRPR;GIINDDEDDEDLMMAS(1)GRPR;GIINDDEDDEDLMMAS(1)GRPR ;; 146.45 1.20E-05 7141700 1053.7 1317.06 1194.53 1119.146 1210 1498.62 1349.57 13483.5 1308.28 1212.162 TRUE FALSE FALSE 930.1868833 1357.637057 1259.109905 1164.789611 1120.740711 1470.03632 1401.623367 15018.40714 1254.352145 1204.952007 0.771970069 1.126714633 1.044946104 0.966668884 0.930112324 1.219995745 1.163219248 12.46390483 1.040997598 1 10.23475997 -4.261258276 6.528244152 0.951256282 12.69082166 0.998683287 0.12455221 0.003424307 0.886325549 0.02113794 0.176578381 5.48E-05 4.261258276 11.73956538 S(ph)LPPGLLR ddPTM_HeLa_CUDC101_4h_R1 2 SLPPGLLR 8 0 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 S(1)LPPGLLR;S(1)LPPGLLR ; 88.177 0.031737 49477000 4428.5 3356.6 3116.4 3307 4282.2 3808.2 3584.4 1638.91 4004.8 3688.1 TRUE FALSE FALSE 3909.397943 3460.012867 3284.882011 3441.873754 3966.310637 3735.56493 3722.651509 1825.47689 3839.720449 3666.163017 1.066345911 0.943769508 0.895999986 0.938821798 1.081869687 1.018930395 1.015408069 0.497925728 1.047340348 1 11.84005522 -4.261250975 24.84743848 1.012633607 0.497925567 0.873219525 0.057344581 3.700320333 487606.685 0.008749433 0.067778921 5.48E-05 4.261250975 -0.51470804 GPPASS(ph)PAPAPK ddPTM_HeLa_CUDC101_4h_R1 3 GPPASSPAPAPK 12 0 Q15942-2;Q15942;H0Y2Y8;H7C3D3 Q15942-2 ZYX Zyxin 1 0 GPPAS(0.049)S(0.951)PAPAPK;GPPAS(0.153)S(0.847)PAPAPK;GPPAS(0.146)S(0.854)PAPAPK ;; 138.2 0.0013053 1249200000 30556.4 23646.7 22549.2 21525.7 22867.2 20498.2 22822.5 36048 22694.1 22427.8 TRUE FALSE FALSE 26974.62511 24375.2268 23768.27796 22403.61109 21180.33221 20107.23099 23702.77147 40151.55861 21758.63959 22294.39845 1.209928367 1.093334133 1.066109858 1.004898658 0.950029321 0.901896099 1.063171609 1.80097071 0.975968903 1 14.44439365 -4.26124719 24.94654978 1.067221621 1.800970933 0.868939904 0.088803851 4.894485662 634825.5963 0.015219724 0.118353884 5.48E-05 4.26124719 0.733749312 SRPLATGPSS(ph)QSHQEK ddPTM_HeLa_CUDC101_4h_R1 2 SRPLATGPSSQSHQEK 16 1 Q96RL1-2;Q96RL1-3;Q96RL1;D6RC40;D6RCQ3 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 SRPLAT(0.001)GPS(0.086)S(0.91)QS(0.003)HQEK;SRPLATGPS(0.161)S(0.838)QSHQEK ; 147.06 0.00012724 15737400 2016.98 1498.31 1433.8 1592.62 2397.6 2210.4 1808.93 7530.8 1616.63 1794.09 TRUE FALSE FALSE 1780.552662 1544.471155 1511.315565 1657.573927 2220.733825 2168.240303 1878.701036 8388.075831 1549.991827 1783.418673 0.998392968 0.866017149 0.847426119 0.92943623 1.245211715 1.215777504 1.053426806 4.703368849 0.869112705 1 10.80042971 -4.26124482 7.097872175 1.007369068 4.755099953 0.986325076 0.130731735 0.00831024 3.307558163 0.018173702 0.148209647 5.48E-05 4.26124482 3.747730885 AS(ph)LEDAPVDDLTR ddPTM_HeLa_CUDC101_4h_R1 2 ASLEDAPVDDLTR 13 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 AS(1)LEDAPVDDLTR;AS(1)LEDAPVDDLTR ; 255.15 7.68E-57 194870000 5971.93 5284.8 5059.7 4757 5201.84 5263.77 4616.47 2947.63 5115.58 4809.22 TRUE FALSE FALSE 5271.909418 5447.618424 5333.242687 4951.011022 4818.110627 5163.372357 4794.528794 3283.176284 4904.713627 4780.614546 1.102768142 1.139522622 1.11559772 1.035643216 1.00784336 1.080064562 1.002910557 0.686768668 1.025958814 1 12.22298037 -4.261243985 3.143355866 1.058539742 0.630684581 0.863721088 0.044612647 0.112203397 1.688249868 0.007589134 0.117927539 5.48E-05 4.261243985 -0.427855162 TRKS(ph)PSSDSWTCADTSTER ddPTM_HeLa_CUDC101_4h_R1 1 TRKSPSSDSWTCADTSTER 19 2 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHH7;Q8N6T3-4;H0YIQ0 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 T(0.215)RKS(0.784)PS(0.001)SDSWTCADTSTER 102.69 0.00083752 60224000 1385.3 1207.2 1450.8 1340.2 1657.9 1407.4 1335.7 2019 1707.9 1461.1 TRUE FALSE FALSE 1222.917234 1244.392401 1529.234636 1394.859149 1535.60002 1380.55619 1387.218396 2248.834799 1637.499639 1452.409312 0.841992146 0.856778038 1.052895092 0.960376071 1.05727773 0.950528324 0.955115328 1.548347825 1.127436753 1 10.50423237 -4.261241204 6.241712313 0.941724363 1.562557424 0.775864651 0.090102557 0.037079516 7.700992849 0.011410557 0.096893924 5.48E-05 4.261241204 0.620833062 S(ph)GEGEVSGLMR ddPTM_HeLa_CUDC101_4h_R1 2 SGEGEVSGLMR 11 0 Q13263-2;Q13263;M0R0K9 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 1 0 S(1)GEGEVSGLMR;S(1)GEGEVSGLMR ; 210.15 1.82E-23 139318000 1416.02 1047.4 1128.92 1255.86 1097.29 1158.93 1170.01 2250.47 953.3 1092.76 TRUE FALSE FALSE 1250.036282 1079.669153 1189.95283 1307.079399 1016.345103 1136.825341 1215.137678 2506.654408 914.0045705 1086.260215 1.150770566 0.993932336 1.095458357 1.203283874 0.935636866 1.046549736 1.118643269 2.307600309 0.841423222 1 10.08515403 -4.261238091 5.26024713 1.067645022 2.360009197 0.931803952 0.102541074 0.021888124 2.094313107 0.011005954 0.101829773 5.48E-05 4.261238091 1.292364176 up VDDKPSS(ph)PGDSSK ddPTM_HeLa_CUDC101_4h_R1 4 VDDKPSSPGDSSK 13 1 Q9HC52;C9J6K3;C9JM54 Q9HC52 CBX8 Chromobox protein homolog 8 1 0 VDDKPS(0.01)S(0.989)PGDS(0.001)SK;VDDKPS(0.192)S(0.808)PGDSSK;VDDKPS(0.03)S(0.97)PGDSSK;VDDKPS(0.45)S(0.55)PGDSSK ;;; 205.33 4.80E-17 216345900 21981.4 16737.3 26500.2 26723.1 23238.7 20812 21438.9 12028.5 20103.8 24467.1 TRUE FALSE FALSE 19404.77361 17252.95637 27932.88097 27812.98353 21524.4274 20415.04578 22265.80555 13397.77582 19275.11285 24321.5686 0.797842192 0.709368571 1.148481886 1.14355221 0.884993388 0.839380309 0.915475721 0.550859858 0.792511091 1 14.56994866 -4.261221124 8.495754343 0.916918368 0.548648395 0.383154901 0.138438516 0.076157304 84.23002776 0.020048618 0.158393724 5.48E-05 4.261221124 -0.368269973 GNAAGSS(ph)QTGDALGK ddPTM_HeLa_CUDC101_4h_R1 1 GNAAGSSQTGDALGK 15 0 Q99081;Q99081-3;B4DGI9;Q99081-4;Q99081-2;F5GY10 Q99081 TCF12 Transcription factor 12 1 0 GNAAGS(0.005)S(0.94)QT(0.055)GDALGK 140.96 3.86E-05 0 1853.1 1702.2 1776.6 1561.5 1778.4 2038.8 1679.5 4097.1 2121.1 1876.4 TRUE FALSE FALSE 1635.882427 1754.642764 1872.64837 1625.184719 1647.210975 1999.913287 1744.278878 4563.497303 2033.66736 1865.239089 0.87703632 0.940706623 1.003972295 0.871301019 0.88310983 1.07220211 0.935150291 2.446601794 1.090298489 1 10.86514485 -4.261220273 24.99919467 0.944621188 2.44660224 0.971518063 0.076105435 1.697790419 193586.7294 0.009156574 0.071305422 5.48E-05 4.261220273 1.501981052 SLTNDWEDHLAVK ddPTM_HeLa_CUDC101_4h_R1 2 SLTNDWEDHLAVK 13 0 P07900;P07900-2;P08238 P07900;P08238 HSP90AA1;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta 0 0 ; ; 185.59 2.95E-10 126932000 6425.4 5768.4 5829.8 4871.77 8411.4 6104.2 5744.7 6242.5 7356.6 5901.8 FALSE FALSE TRUE 5672.224352 5946.117567 6144.976622 5070.461838 7790.90778 5987.772555 5966.275003 6953.120967 7053.357834 5866.695831 0.966851617 1.013537729 1.04743399 0.864278971 1.327989043 1.020637975 1.016973638 1.185185182 1.202270927 1 12.51833248 -5.787777525 24.99998629 0.984167795 1.120712426 0.174403353 0.116299251 178.1493763 169097.8249 0.012815222 0.023234824 1.63E-06 5.787777525 0.136544631 S(ph)SQSSSQQFSGIGR ddPTM_HeLa_CUDC101_4h_R1 1 SSQSSSQQFSGIGR 14 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 0 S(0.976)S(0.024)QSSSQQFSGIGR 146.1 0.00034606 14964000 868 774.21 726.85 736.25 878.49 834.12 713 2195.6 843.38 595.52 TRUE FALSE FALSE 766.2543558 798.0624924 766.1457096 766.2774573 813.6855429 818.2105507 740.5006488 2445.538229 808.6155194 591.9778206 1.294397069 1.348129043 1.294213538 1.294436093 1.374520319 1.3821642 1.250892556 4.131131512 1.36595577 1 9.209399314 -4.261219851 6.991607129 1.212291321 4.174702505 0.977972944 0.12748422 0.013524561 4.969409978 0.022937802 0.187862617 5.48E-05 4.261219851 2.962411184 SLTPAVPVESKPDK(ac)PSGK ddPTM_HeLa_CUDC101_4h_R1 2 SLTPAVPVESKPDKPSGK 18 2 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;F8W7E0;P20810-2;E9PCH5;P20810-3;H0YA91;E9PSG1;H0Y944;E7EQK6;E7EVY3 P20810-6;E7EVY3 CAST Calpastatin 0 1 ; SLTPAVPVESKPDK(1)PSGK;SLTPAVPVESKPDK(1)PSGK 187.56 6.02E-12 4413300 4298.7 2892.34 2979.34 2038.11 4838.9 3268.06 3688.54 3190.81 5123.8 4832.7 FALSE TRUE FALSE 3794.812902 2981.449567 3140.412132 2121.232935 4481.943987 3205.7272 3830.808223 3554.038913 4912.594795 4803.954885 0.789935167 0.620623973 0.65371391 0.441559712 0.932969625 0.667310014 0.797428018 0.739815214 1.022614682 1 12.23000689 -8.335338791 0.85835831 0.974534816 0.698027363 0.492757151 0.123249802 0.343142937 0.532636186 0.044824633 0.026808323 4.62E-09 8.335338791 -0.276507453 EGSQGELT(ph)PANS(ph)QSR ddPTM_HeLa_CUDC101_4h_R1 1 EGSQGELTPANSQSR 15 0 C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7;J3QQX0 C9JFE4 GPS1 COP9 signalosome complex subunit 1 2 0 EGS(0.024)QGELT(0.976)PANS(0.495)QS(0.505)R 93.342 0.032175 7563700 884.33 787.07 854.16 878.96 801.17 1077.9 1260 15796 0 981.81 TRUE FALSE FALSE 780.670178 811.3186938 900.3384733 914.807788 742.0692853 1057.340853 1308.598622 17594.15279 0 975.9701505 0.799891449 0.831294577 0.922506157 0.937331728 0.760340145 1.083374172 1.340818284 18.02734723 0 1 9.930693214 -4.261218119 6.031134916 0.910366212 18.4826006 0.996590138 0.301468968 0.002025532 0.357242734 0.016839824 0.145056555 5.48E-05 4.261218119 17.57223439 RYINMLTRPSACPCCLFPPRY(ph)GK ddPTM_HeLa_CUDC101_4h_R1 1 RYINMLTRPSACPCCLFPPRYGK 23 3 K7EKP2 K7EKP2 PPY 1 0 RYINMLT(0.001)RPS(0.004)ACPCCLFPPRY(0.995)GK 41.136 0.0031505 0 539.95 634.97 638.33 496.19 709.76 575.25 585.89 754.84 612.53 644.75 TRUE FALSE FALSE 476.6578795 654.5326731 672.8400506 516.4267729 657.4024188 564.2780647 608.4879736 840.7679344 587.2812541 640.9149983 0.743714659 1.02124724 1.049811679 0.805764843 1.025724816 0.880425745 0.949405109 1.311824402 0.916316915 1 9.323989221 -4.26120932 3.646038293 0.904348706 1.357295542 0.566970287 0.097460589 0.17277627 4.171899268 0.016370839 0.211981342 5.48E-05 4.26120932 0.452946835 SSTPLPTISS(ph)SAENTR ddPTM_HeLa_CUDC101_4h_R1 1 SSTPLPTISSSAENTR 16 0 P42166;P42167;G5E972;H0YJH7;P42167-2;P42167-3 P42166;P42167 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 0 SSTPLPT(0.013)IS(0.029)S(0.478)S(0.478)AENT(0.001)R 147.75 0.00021622 15932000 3967.6 3659.3 3472.5 2711 3199.1 3989 4364.3 20215 3754.3 4910.9 TRUE FALSE FALSE 3502.523942 3772.038696 3660.233854 2821.566298 2963.108767 3912.916471 4532.632513 22516.19389 3599.546165 4881.689748 0.717481881 0.772691197 0.749788299 0.57798968 0.606984245 0.801549601 0.928496637 4.612377076 0.737356602 1 12.25316489 -4.261203646 5.665860607 0.807901344 4.738444921 0.989009597 0.12164025 0.012944268 1.713406685 0.02206024 0.195735097 5.48E-05 4.261203646 3.930543577 up LLSNS(ph)QTLGNDMLMNTPR ddPTM_HeLa_CUDC101_4h_R1 1 LLSNSQTLGNDMLMNTPR 18 0 H3BU04;Q9BVW5 H3BU04 TIPIN TIMELESS-interacting protein 1 0 LLS(0.006)NS(0.826)QT(0.167)LGNDMLMNTPR 106.31 0.00067119 6912800 1961.8 1307.3 1148.1 1483.6 1607.7 1317.5 1560.2 4511.8 1444.2 1855.9 TRUE FALSE FALSE 1731.840778 1347.576363 1210.169759 1544.107621 1489.103174 1292.370883 1620.377437 5025.405075 1384.669465 1844.861024 0.938737799 0.730448714 0.65596798 0.836977745 0.807162791 0.700524791 0.878319513 2.724001976 0.750554891 1 10.84929642 -4.261199925 24.98112587 0.890942766 2.724002524 0.952549346 0.12696762 3.379547869 352362.7434 0.020664723 0.16053683 5.48E-05 4.261199925 1.833059758 KAS(ph)GSENEGDY(ph)NPGR ddPTM_HeLa_CUDC101_4h_R1 1 KASGSENEGDYNPGR 15 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 2 0 KAS(0.858)GS(0.497)ENEGDY(0.645)NPGR 115.04 0.0021236 23411000 4861.4 4210.8 4188.5 4422 3953.1 4173.1 3936.3 2641 3217 3858.5 TRUE FALSE FALSE 4291.554061 4340.529757 4414.94298 4602.348274 3661.487689 4093.50507 4088.12441 2941.640765 3084.393898 3835.54947 1.118888987 1.131657873 1.151058802 1.199918893 0.954618815 1.067253884 1.065851045 0.766941161 0.804159592 1 11.90521755 -4.261198022 6.168410459 1.072849447 0.759447037 0.375331027 0.109248609 0.070016151 13.7369444 0.010698048 0.091323423 5.48E-05 4.261198022 -0.31340241 VS(ph)SGYVPPPVATPFSSK ddPTM_HeLa_CUDC101_4h_R1 2 VSSGYVPPPVATPFSSK 17 0 Q15942-2;Q15942;H7C3R3 Q15942-2 ZYX Zyxin 1 0 VS(0.824)S(0.171)GY(0.005)VPPPVATPFSSK;VS(0.761)S(0.195)GY(0.044)VPPPVATPFSSK ; 119.92 0.00031144 54467000 12459.2 11671.5 10448.5 10816.1 13856.2 13029.4 11021 5451 11237.4 11249.3 TRUE FALSE FALSE 10998.75146 12031.08508 11013.37751 11257.22731 12834.05573 12780.8859 11446.08366 6071.519806 10774.18962 11182.38866 0.983577999 1.075895808 0.984885953 1.006692546 1.147702527 1.142947745 1.023581276 0.542953745 0.963496256 1 13.44894077 -4.261187132 24.9250268 1.02012744 0.542953598 0.841464008 0.063916192 6.16040179 608364.0253 0.009552781 0.07462666 5.48E-05 4.261187132 -0.477173842 SLVFEDDLR ddPTM_HeLa_CUDC101_4h_R1 2 SLVFEDDLR 9 0 M0QX72;Q8NBJ5 M0QX72 COLGALT1 Procollagen galactosyltransferase 1 0 0 ; ; 141.2 0.0094361 13862500 4259.7 3657.8 3394.7 3483.5 4256.3 4101.3 3620.6 3617.6 4436.4 5174.6 FALSE FALSE TRUE 3760.384423 3770.492482 3578.22775 3625.572187 3942.321229 4023.074536 3760.247755 4029.412961 4253.529714 5143.821249 0.731048814 0.733013902 0.6956361 0.704840237 0.766418784 0.782117873 0.731022245 0.783350114 0.826920204 1 12.32862479 -9.141335432 0.7589085 1.011818422 0.738452449 0.500346716 0.059293185 0.163431545 0.159669738 0.027064869 0.006683358 7.22E-10 9.141335432 -0.273365973 RGSGDTSIS(ph)IDTEASIR ddPTM_HeLa_CUDC101_4h_R1 1 RGSGDTSISIDTEASIR 17 1 Q32MZ4-3;Q32MZ4-2;Q32MZ4;Q32MZ4-4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 RGS(0.027)GDT(0.176)S(0.056)IS(0.559)IDT(0.176)EAS(0.006)IR 96.562 0.00058694 0 827.22 803.95 750.85 694.83 934.44 746.44 729.9 1032 647.09 766.55 TRUE FALSE FALSE 730.2545256 828.7187466 791.4432222 723.1681707 865.5082229 732.2029007 758.0524875 1149.478709 620.4166763 761.9905265 0.958351187 1.087570931 1.038652312 0.949051393 1.135851684 0.960908141 0.994831906 1.508520997 0.814205236 1 9.573629251 -4.261174659 25 0.998715911 1.508521148 0.778560642 0.082390885 5.238085042 494416.0506 0.007928002 0.061913579 5.48E-05 4.261174659 0.509805238 TAESQT(ph)PTPSATSFFSGK ddPTM_HeLa_CUDC101_4h_R1 1 TAESQTPTPSATSFFSGK 18 0 P55265-5;P55265;P55265-4;A0A3B3IRQ9;P55265-3;P55265-2;A0A3B3ITG9;A0A3B3ISX1 P55265-5 ADAR Double-stranded RNA-specific adenosine deaminase 1 0 TAES(0.004)QT(0.828)PT(0.156)PS(0.01)ATSFFSGK 139.88 0.00040277 10199000 690.96 578.32 581.85 713.95 634.23 664.36 614.02 983.64 609.83 642.85 TRUE FALSE FALSE 609.9667162 596.1373537 613.306571 743.067967 587.4441165 651.6884399 637.7029571 1095.613602 584.6925493 639.0262996 0.954525215 0.932883911 0.95975169 1.16281281 0.919280031 1.01981474 0.997929127 1.714504712 0.914974156 1 9.319731497 -4.261166019 6.579958458 0.985417476 1.728458698 0.911475317 0.068246042 0.021496442 5.783606756 0.008466639 0.070644331 5.48E-05 4.261166019 0.743041222 ELS(ph)QNTDESGLNDEAIAK ddPTM_HeLa_CUDC101_4h_R1 1 ELSQNTDESGLNDEAIAK 18 0 A0A1W2PP02;P35251-2;P35251 A0A1W2PP02;P35251-2 RFC1 Replication factor C subunit 1 1 0 ELS(1)QNTDESGLNDEAIAK 217.4 5.50E-25 8451900 1706.9 1581.7 1586.8 1313.5 1559.1 1827.7 2162.3 14560 1449.2 2230.3 TRUE FALSE FALSE 1506.819769 1630.430302 1672.587208 1367.070207 1444.088299 1792.839668 2245.700635 16217.45155 1389.463363 2217.034076 0.679655665 0.735410574 0.754425575 0.616621198 0.651360443 0.808665815 1.012930139 7.314931114 0.626721699 1 11.11441523 -4.261155992 5.614213022 0.801255904 7.537744655 0.996185429 0.121643849 0.007331258 0.93135033 0.02112051 0.188411174 5.48E-05 4.261155992 6.736488752 up S(ph)VDEIAK ddPTM_HeLa_CUDC101_4h_R1 2 SVDEIAK 7 0 A6ND36;A6ND36-2 A6ND36 FAM83G Protein FAM83G 1 0 S(1)VDEIAK;S(1)VDEIAK ; 94.692 0.028055 11410800 8995.1 6727.6 6993.5 7195.8 7465.9 7751.4 6847.9 4224.7 6950.1 7224.7 TRUE FALSE FALSE 7940.708014 6934.869382 7371.589764 7489.275827 6915.155431 7603.55496 7112.025797 4705.622771 6663.613936 7181.727163 1.105682217 0.965626962 1.0264369 1.042823774 0.962881947 1.05873626 0.990294623 0.655221601 0.927856738 1 12.81011513 -4.261151186 3.480433862 1.036847243 0.608160379 0.786758704 0.054028112 0.084645948 1.754818382 0.006956991 0.095272717 5.48E-05 4.261151186 -0.428686864 TPS(ph)IQPSLLPHAAPFAK ddPTM_HeLa_CUDC101_4h_R1 1 TPSIQPSLLPHAAPFAK 17 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3;A0A0A0MSW3;H0YF36 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 T(0.068)PS(0.932)IQPSLLPHAAPFAK 97.621 0.0025681 12922000 2794.2 1301.1 1488.4 1465.1 1978.6 1895.9 1925.8 4387.9 2085 2039.7 TRUE FALSE FALSE 2466.668112 1341.185349 1568.867406 1524.853111 1832.64262 1859.738866 2000.078751 4887.400799 1999.055418 2027.567774 1.216565061 0.661474978 0.77376817 0.752060242 0.903862571 0.917226487 0.986442366 2.410474689 0.985937656 1 10.98553442 -4.261149702 24.93122445 0.998184453 2.410475127 0.871721328 0.16963052 7.352534172 632474.9016 0.029299973 0.228849612 5.48E-05 4.261149702 1.412290674 KTTEEQVQAS(ph)TPCPR ddPTM_HeLa_CUDC101_4h_R1 2 KTTEEQVQASTPCPR 15 1 Q14137 Q14137 BOP1 Ribosome biogenesis protein BOP1 1 0 KTTEEQVQAS(0.62)T(0.38)PCPR;KTTEEQVQAS(0.5)T(0.5)PCPR ; 99.371 0.0032617 14245800 7039 6516 6476 6517.4 7405.3 6961.7 6201.9 4138.2 5935.7 6264.9 TRUE FALSE FALSE 6213.89909 6716.750237 6826.112149 6783.207743 6859.025772 6828.917171 6441.10936 4609.275961 5691.027934 6227.636096 0.997794186 1.078539294 1.096100036 1.089210679 1.101385127 1.096550451 1.034278378 0.740132514 0.913834374 1 12.60446893 -4.261141134 24.33512546 1.031837884 0.740132411 0.702940543 0.058932358 7.320698758 596893.4701 0.008198495 0.063967553 5.48E-05 4.261141134 -0.291705473 SLYASSPGGVYATR ddPTM_HeLa_CUDC101_4h_R1 2 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 0 0 ; ; 158.08 0.0016264 15198300 1127.45 871.79 857.34 1073.43 985.55 1210.85 896.16 836.3 1118.08 710.88 FALSE FALSE TRUE 995.2920201 898.6488166 903.6903937 1117.209115 912.84794 1187.755054 930.7251914 931.5010116 1071.992269 706.6516541 1.408462025 1.27169987 1.278834329 1.580989882 1.291793396 1.680821161 1.317091931 1.318189813 1.51700242 1 9.4648554 -9.691930539 0.4159255 0.808374813 1.422272403 0 0.207837003 1.577908668 0.278904849 0.44037168 0.038660526 2.03E-10 9.691930539 0.61389759 ATLTAS(ph)PLGAS ddPTM_HeLa_CUDC101_4h_R1 2 ATLTASPLGAS 11 0 Q13111;Q13111-3 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 AT(0.001)LT(0.003)AS(0.973)PLGAS(0.023);ATLT(0.017)AS(0.978)PLGAS(0.005) ; 86.344 0.030031 58456000 11285.5 10051 8419.8 8691 10524.7 10001.4 9365.8 12160.1 9956.3 9832.3 TRUE FALSE FALSE 9962.630798 10360.6594 8874.999857 9045.456546 9748.313849 9810.639958 9727.042043 13544.35663 9545.8971 9773.817042 1.019318323 1.06004229 0.908038264 0.925478399 0.997390662 1.003767506 0.995214255 1.385779637 0.97668056 1 13.25470638 -4.261141092 24.99037208 0.998537347 1.385779753 0.885876727 0.042734029 5.935716547 497051.6095 0.006080577 0.047507169 5.48E-05 4.261141092 0.387242406 SLYYYIQQDTK ddPTM_HeLa_CUDC101_4h_R1 4 SLYYYIQQDTK 11 0 P07355;P07355-2;A6NMY6 P07355 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein 0 0 ;;; ;;; 209.85 5.57E-48 41420000 3648.43 3849.98 3858.29 3159.4 4618.69 3764.03 3931.29 3477.52 4185.42 4291.66 FALSE FALSE TRUE 3220.766566 3968.59332 4066.880828 3288.253988 4277.97844 3692.237399 4082.921172 3873.38682 4012.895216 4266.133015 0.75496159 0.930255411 0.953294427 0.770780934 1.002776619 0.865476389 0.957054353 0.907938596 0.940639966 1 12.05871323 -4.761840193 24.99999642 0.889538703 0.932496472 0.002431497 0.082071975 35.95734074 2243612.523 0.014104171 0.04652577 1.73E-05 4.761840193 0.042957769 SMATVDEEEQAVLDR ddPTM_HeLa_CUDC101_4h_R1 1 SMATVDEEEQAVLDR 15 0 Q8IVD9 Q8IVD9 NUDCD3 NudC domain-containing protein 3 0 0 167.73 2.98E-05 2417800 1641.8 1528.1 1208.7 1370.1 1382.2 1497.1 1121.4 1085 1464.3 1578.2 FALSE FALSE TRUE 1449.350693 1575.17895 1274.045978 1425.9786 1280.23786 1468.545312 1164.652774 1208.512014 1403.940934 1568.812796 0.923851907 1.004057943 0.812108354 0.908953958 0.816055212 0.936087031 0.742378426 0.770335388 0.894906606 1 10.61545749 -1.000000002 0.158639172 1.019335879 0.014056116 0.446940096 0.064651528 28.85813566 0.290385388 0.09802356 6.796521873 0.1 1.000000002 -1.005279764 QLPLEPES(ph)PSGQVGPRPAPPQEESPSSEAK ddPTM_HeLa_CUDC101_4h_R1 1 QLPLEPESPSGQVGPRPAPPQEESPSSEAK 30 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 QLPLEPES(0.494)PS(0.494)GQVGPRPAPPQEES(0.006)PS(0.003)S(0.003)EAK 48.118 0.016065 13157000 611.4 368.59 421.37 340.55 554.52 474.07 464.08 618.11 504.82 489.22 TRUE FALSE FALSE 539.7326188 379.945821 444.1505368 354.439101 513.6141644 465.0279046 481.9797211 688.4731439 484.0111059 486.3100977 1.10985279 0.781283018 0.913307248 0.728833521 1.056145383 0.956237402 0.991095442 1.415708099 0.995272581 1 8.925732738 -4.261125425 25 0.99489771 1.415708225 0.555704426 0.118987223 17.4157784 1386184.481 0.018381486 0.143744307 5.48E-05 4.261125425 0.420810515 S(ph)ASDLSEDLFK ddPTM_HeLa_CUDC101_4h_R1 2 SASDLSEDLFK 11 0 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog 1 0 S(0.991)AS(0.009)DLSEDLFK;S(1)ASDLSEDLFK ; 139.46 0.0014421 15254600 2123.47 2110.59 1802.15 2007.62 2168.7 2566.3 2242.62 11805.8 2406.9 2261.5 TRUE FALSE FALSE 1874.560066 2175.614776 1899.57968 2089.499421 2008.719322 2517.352103 2329.118605 13149.72455 2307.686563 2248.048497 0.833861043 0.967779289 0.844990525 0.929472573 0.89353914 1.119794393 1.036062437 5.849395405 1.026528816 1 11.13445744 -4.261107415 6.241966591 0.931738488 5.964836552 0.99680516 0.083024606 0.005056294 1.049542979 0.012582524 0.107054137 5.48E-05 4.261107415 5.033098063 QNS(ph)SSSDSGGSIVR ddPTM_HeLa_CUDC101_4h_R1 1 QNSSSSDSGGSIVR 14 0 A0A2R8Y4W2;A0A2R8YE63;Q12929-2;Q12929 A0A2R8Y4W2 EPS8 Epidermal growth factor receptor kinase substrate 8 1 0 QNS(0.61)S(0.029)S(0.251)S(0.067)DS(0.043)GGSIVR 193.3 2.46E-15 36070000 1928.8 1582.9 1539.8 1350.4 1757.4 1574.7 1560.3 1689 1644.9 1617 TRUE FALSE FALSE 1702.708988 1631.667273 1623.046246 1405.475149 1627.760103 1544.665221 1620.481294 1881.268933 1577.096526 1607.382012 1.059305738 1.015108581 1.009745184 0.874387755 1.012677815 0.960982025 1.008149451 1.170393173 0.981158501 1 10.65049713 -4.261089043 24.32264782 1.009725949 1.170393243 0.51712672 0.049093195 14.18606377 984285.1331 0.007366393 0.057967723 5.48E-05 4.261089043 0.160667294 NQEKY(ph)DK ddPTM_HeLa_CUDC101_4h_R1 1 NQEKYDK 7 1 Q9UHK0 Q9UHK0 NUFIP1 Nuclear fragile X mental retardation-interacting protein 1 1 0 NQEKY(1)DK 102.77 0.00084667 0 1415.9 1236.3 1216.7 1191.3 1499.1 1225 1186 1508.6 1273.8 1187.8 TRUE FALSE FALSE 1249.930348 1274.388938 1282.478482 1239.886363 1388.51438 1201.635166 1231.744417 1680.332926 1221.293425 1180.734913 1.058603701 1.079318418 1.086169697 1.050097147 1.175974696 1.017701055 1.043201487 1.423124622 1.034350227 1 10.20546939 -4.26108465 24.89565066 1.047025248 1.423124741 0.837710045 0.047532257 8.282526475 581034.4794 0.007228501 0.0571109 5.48E-05 4.26108465 0.376099493 SMDFEEAER ddPTM_HeLa_CUDC101_4h_R1 2 SMDFEEAER 9 0 O43396;K7ER96 O43396 TXNL1 Thioredoxin-like protein 1 0 0 ; ; 182.98 4.56E-10 32840000 5401.9 4620.2 4587.5 4462 5020.8 4825.5 4746.3 4446.4 5162.5 4108.7 FALSE FALSE TRUE 4768.697471 4762.542886 4835.514126 4643.979646 4650.425587 4733.461627 4929.366381 4952.560203 4949.699565 4084.26127 1.167578947 1.166072044 1.183938491 1.137042745 1.138620984 1.158951721 1.206917495 1.212596324 1.211895919 1 11.99585944 -9.320367912 0.514359 0.959702668 1.176346768 0 0.070484059 0.417898585 0.146536656 0.045899162 0.006706416 4.78E-10 9.320367912 0.2166441 SMEAEMIQLQEELAAAER ddPTM_HeLa_CUDC101_4h_R1 1 SMEAEMIQLQEELAAAER 18 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 321.85 8.05E-189 0 260.89 318.05 141.96 165.84 308 330.47 152.56 223.11 375.36 269.89 FALSE FALSE TRUE 230.3088697 327.8487435 149.634787 172.603672 285.2794536 324.1668354 158.4442903 248.5079406 359.8875019 268.2846823 0.858449568 1.222018122 0.557746293 0.643360145 1.063346037 1.208294237 0.590582694 0.926284492 1.341438873 1 8.067620876 -9.923657324 0.4454358 1.068563042 0.873676832 0.107101974 0.249024185 10.39923883 1.835376188 1.000731555 0.063038862 1.19E-10 9.923657324 -0.194886211 LVPS(ph)QEETK ddPTM_HeLa_CUDC101_4h_R1 4 LVPSQEETK 9 0 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 LVPS(1)QEETK;LVPS(1)QEETK;LVPS(1)QEETK;LVPS(1)QEETK ;;; 136.5 0.0023331 661952900 12548.4 9556.2 10044.6 10025.4 10136.7 11753.4 13031.8 63275 11598.5 12900.8 TRUE FALSE FALSE 11077.49557 9850.615195 10587.64146 10434.27915 9388.935836 11529.22348 13534.44089 70477.97023 11120.40492 12824.06547 0.863805289 0.76813513 0.825607253 0.813648306 0.732134116 0.899030304 1.055393933 5.495758768 0.867151291 1 13.64656608 -4.26108176 5.457703723 0.891798717 5.668973651 0.99666742 0.080301321 0.007320505 0.820765309 0.014341161 0.130054372 5.48E-05 4.26108176 4.777174935 up QRS(ph)DDESPSTSSGSSDADQRDPAAPEPEEQEER ddPTM_HeLa_CUDC101_4h_R1 2 QRSDDESPSTSSGSSDADQRDPAAPEPEEQEER 33 2 R4GMM6;R4GN77;R4GNG6;R4GND1;A0A1B0GX65;Q969T4 R4GMM6 UBE2E3 Ubiquitin-conjugating enzyme E2 E3 1 0 QRS(0.995)DDES(0.005)PSTSSGSSDADQRDPAAPEPEEQEER;QRS(0.987)DDES(0.013)PSTSSGSSDADQRDPAAPEPEEQEER ; 94.96 2.17E-12 70523000 2092.51 1770.14 1803.23 1567.55 1746 1818.96 1758.67 5379.86 2093.28 2043.61 TRUE FALSE FALSE 1847.22915 1824.675915 1900.718068 1631.481465 1617.201059 1784.266369 1826.502491 5992.281516 2006.994112 2031.454517 0.909313565 0.898211552 0.93564392 0.803110014 0.796080368 0.878319625 0.899110699 2.949749289 0.987959167 1 10.98829735 -4.26104992 24.99998711 0.921840618 2.949749899 0.98855137 0.066113306 2.682800638 172149.9357 0.010924287 0.085966729 5.48E-05 4.26104992 2.027909281 GGDPLEKQDQISGLS(ph)QSEVK ddPTM_HeLa_CUDC101_4h_R1 1 GGDPLEKQDQISGLSQSEVK 20 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 GGDPLEKQDQIS(0.001)GLS(0.594)QS(0.406)EVK 117.02 2.58E-05 11901000 951.98 766.94 751.66 795.95 802.58 1016.7 983.48 7906.7 838.47 727.06 TRUE FALSE FALSE 840.3903475 790.5685124 792.2970132 828.4122814 743.3752724 997.3081414 1021.413153 8806.766768 803.9079117 722.7354148 1.162791155 1.093856059 1.096247668 1.146217917 1.028557972 1.379907669 1.413260139 12.18532618 1.112312881 1 9.497323779 -4.261034678 5.828654626 1.107711025 12.51908226 0.999113854 0.098542818 0.003316843 0.498930515 0.017033726 0.149380624 5.48E-05 4.261034678 11.41137124 up YGS(ph)FEEAEASYPILNR ddPTM_HeLa_CUDC101_4h_R1 1 YGSFEEAEASYPILNR 16 0 O95425-3;O95425;A0A6I8PIX7;O95425-2;O95425-4 O95425-3 SVIL Supervillin 1 0 YGS(0.601)FEEAEAS(0.399)YPILNR 164.66 2.85E-05 12057000 1105.2 870.51 769.63 1127.5 926.12 1051.9 1037.2 1425.1 1136.4 1209.9 TRUE FALSE FALSE 975.6501314 897.3293813 811.2385258 1173.484323 857.8019727 1031.83676 1077.205151 1587.327624 1089.557111 1202.703461 0.811214205 0.746093622 0.674512506 0.975705452 0.713228157 0.857931147 0.895653157 1.319799664 0.905923319 1 10.23206526 -4.26102799 4.609748709 0.868293141 1.348088919 0.644618696 0.104975683 0.111522571 6.241926909 0.01687372 0.172378807 5.48E-05 4.26102799 0.479795778 RKPS(ph)VPDSASPADDSFVDPGER ddPTM_HeLa_CUDC101_4h_R1 2 RKPSVPDSASPADDSFVDPGER 22 2 C9K098;C9JVV5;H7C5C7;C9J869;C9JAB9;P16333-2;P16333 C9K098 NCK1 Cytoplasmic protein NCK1 1 0 RKPS(0.914)VPDS(0.077)AS(0.009)PADDSFVDPGER;RKPS(0.99)VPDS(0.007)AS(0.003)PADDSFVDPGER ; 63.701 0.0080728 78513000 2315 2207.5 2227.9 2090.4 2265.5 2324.3 2084.64 2935.8 2054.54 2177.14 TRUE FALSE FALSE 2043.639209 2275.510458 2348.347013 2175.655547 2098.378579 2279.96785 2165.045263 3269.999605 1969.850992 2164.190274 0.944297382 1.051437337 1.085092674 1.00529772 0.969590615 1.053496948 1.000395062 1.510957536 0.910202312 1 11.07961163 -4.261027264 6.938291596 0.994035631 1.518955089 0.901519432 0.050384256 0.023296643 8.205413698 0.006899551 0.05680209 5.48E-05 4.261027264 0.524919458 DT(ph)QSPSTCSEGLLGWSQK ddPTM_HeLa_CUDC101_4h_R1 1 DTQSPSTCSEGLLGWSQK 18 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DT(0.499)QS(0.499)PS(0.001)TCSEGLLGWSQK 164.99 5.44E-05 12469000 3037.4 2432 1925.8 2552.5 2396 2630.3 2340 990.44 3051.1 2189.7 TRUE FALSE FALSE 2681.360576 2506.927037 2029.914573 2656.601983 2219.251854 2580.13141 2430.254584 1103.187686 2925.332367 2176.675567 1.231860465 1.151722873 0.932575623 1.220485966 1.019560235 1.185354147 1.116498306 0.506822286 1.343945056 1 11.08791067 -4.261025136 24.82343449 1.109362984 0.506822093 0.711393613 0.118861768 11.62323582 696250.4581 0.014551497 0.114674004 5.48E-05 4.261025136 -0.60254089 TSSVLGMSVES(ph)APAVEEEKGEELEQK ddPTM_HeLa_CUDC101_4h_R1 1 TSSVLGMSVESAPAVEEEKGEELEQK 26 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.118)S(0.034)S(0.132)VLGMS(0.336)VES(0.379)APAVEEEKGEELEQK 60.464 0.015095 5587000 1800.4 1227.8 1488.6 1588.3 1358.5 1429.1 1471.6 2615.2 1600.2 1636.7 TRUE FALSE FALSE 1589.359841 1265.627063 1569.078219 1653.077739 1258.286162 1401.842299 1528.360105 2912.903797 1534.239079 1626.964836 0.976886412 0.777906833 0.964420487 1.016050073 0.773394811 0.861630361 0.939393447 1.790391368 0.943006908 1 10.66796735 -4.26101506 24.83932304 0.949595759 1.790391645 0.898676222 0.087367382 7.715244319 451476.5457 0.013033261 0.10282464 5.48E-05 4.26101506 0.840795886 SMIIDRR ddPTM_HeLa_CUDC101_4h_R1 2 SMIIDRR 7 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 124.59 0.011933 25375000 9157.2 7848.9 7382.7 7570.9 8697.8 7816.7 7293.7 7917 7677.7 5326.2 FALSE FALSE TRUE 8083.806897 8090.715306 7781.831093 7879.674026 8056.180622 7667.609471 7575.020452 8818.239278 7361.221956 5294.519526 1.526825401 1.528130223 1.469789856 1.488269896 1.521607501 1.448216299 1.430728589 1.665540987 1.390347494 1 12.37028405 -9.20819374 0.697941751 0.955614743 1.510104522 0.33631888 0.134305819 0.190458731 0.147157357 0.06264805 0.013134603 6.19E-10 9.20819374 0.554489779 SMLPSENNIENSLLADR ddPTM_HeLa_CUDC101_4h_R1 1 SMLPSENNIENSLLADR 17 0 J3KNV1;O60281-2;O60281 J3KNV1 ZNF292 Zinc finger protein 292 0 0 37.913 0.03866 5309300 3286.9 3284.7 3277.9 3239.3 2856 3236.3 2956.9 2921 3178.9 2988.2 FALSE FALSE TRUE 2901.614565 3385.897714 3455.113189 3371.412655 2645.31857 3174.57297 3070.948623 3253.514833 3047.864396 2970.426054 0.976834472 1.139869383 1.163170914 1.134992959 0.890551901 1.068726476 1.033841129 1.095302416 1.026069776 1 11.53645416 -7.290206298 24.58573099 0.989060717 1.071948042 0.171603519 0.073116967 666.6096433 569718.4272 0.012766715 0.014600904 5.13E-08 7.290206298 0.082887325 YQPLAST(ph)ASDNDFVTPEPR ddPTM_HeLa_CUDC101_4h_R1 2 YQPLASTASDNDFVTPEPR 19 0 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 0 YQPLAS(0.008)T(0.67)AS(0.129)DNDFVT(0.193)PEPR;YQPLAS(0.078)T(0.843)AS(0.078)DNDFVTPEPR ; 296.78 6.64E-123 111150000 5011.8 4201.8 3318.8 4060.9 4176.8 4800.2 3952.4 1994.68 4157 3730.2 TRUE FALSE FALSE 4424.324401 4331.252478 3498.224367 4226.521055 3868.685785 4708.644183 4104.845392 2221.746308 3985.646701 3708.012605 1.19317944 1.168079222 0.943422998 1.139834598 1.043331347 1.269856574 1.107020345 0.599174422 1.074874097 1 11.85643043 -4.261011114 24.56060283 1.100939837 0.599174246 0.736629338 0.090607422 11.79802692 676310.5178 0.01383659 0.108831022 5.48E-05 4.261011114 -0.501765591 AIPVS(ph)PSAVEEDEDEDGHTVVATAR ddPTM_HeLa_CUDC101_4h_R1 3 AIPVSPSAVEEDEDEDGHTVVATAR 25 0 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2;H0Y3R8 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 AIPVS(0.5)PS(0.5)AVEEDEDEDGHTVVATAR;AIPVS(0.5)PS(0.5)AVEEDEDEDGHTVVATAR;AIPVS(0.816)PS(0.184)AVEEDEDEDGHTVVATAR ;; 217.93 2.80E-31 171519000 9458.3 8238.8 7214.5 6915.4 9022.6 8732.5 7894.7 5294.45 9162.9 8179.5 TRUE FALSE FALSE 8349.612412 8492.627663 7604.537693 7197.439903 8357.020774 8565.942112 8199.201224 5897.148787 8785.201384 8130.84797 1.026905489 1.044494706 0.93526994 0.885201633 1.027816632 1.053511533 1.008406657 0.725280907 1.080477881 1 12.9891901 -4.261005086 24.99999871 1.004911612 0.725280822 0.704917339 0.054648135 14.12064066 812585.0309 0.007062434 0.055919681 5.48E-05 4.261005086 -0.27963079 GADTAPTLAPEALPS(ph)QGEVER ddPTM_HeLa_CUDC101_4h_R1 2 GADTAPTLAPEALPSQGEVER 21 0 Q8IZL8;C9JFV4 Q8IZL8 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 0 GADTAPTLAPEALPS(1)QGEVER;GADTAPTLAPEALPS(1)QGEVER ; 192.09 4.57E-14 24527000 2565.9 1297.7 1721.86 1445.11 1883.09 2484.1 2801.9 19517.5 1762.96 2687.9 TRUE FALSE FALSE 2265.129092 1337.680599 1814.94896 1504.047832 1744.178202 2436.719931 2909.970222 21739.29331 1690.290043 2671.912251 0.847755794 0.500645408 0.679269673 0.562910639 0.652782741 0.911976031 1.089096478 8.136230259 0.632614354 1 11.38365691 -4.260989791 5.477390828 0.836549406 8.408012073 0.993492571 0.179022866 0.009156599 1.042685955 0.028543817 0.258632234 5.48E-05 4.260989791 7.571462667 up (ac)S(ph)ETAPLAPTIPAPAEK ddPTM_HeLa_CUDC101_4h_R1 2 SETAPLAPTIPAPAEK 16 0 P16402 P16402 HIST1H1D Histone H1.3 1 0 S(0.5)ET(0.5)APLAPTIPAPAEK;S(0.495)ET(0.495)APLAPT(0.01)IPAPAEK ; 69.03 0.0012846 12967900 8050.1 6974.9 7484.2 7778.6 7164 6802.3 7309.6 12743.6 7041.6 8681.1 TRUE FALSE FALSE 7106.479481 7189.788402 7888.81849 8095.84493 6635.525993 6672.557461 7591.533721 14194.27991 6751.342268 8629.464431 0.823513387 0.833167395 0.914172433 0.93816308 0.768938333 0.773229615 0.879722465 1.644862207 0.78235936 1 13.07505531 -4.26098667 24.96895809 0.889551523 1.644862439 0.897993697 0.078976861 9.538671733 525930.5338 0.012613754 0.0996739 5.48E-05 4.26098667 0.755310916 RYS(ph)DLTTLVAFPSSSVYPTKDEENNPLETEYGLSVYK ddPTM_HeLa_CUDC101_4h_R1 2 RYSDLTTLVAFPSSSVYPTKDEENNPLETEYGLSVYK 37 2 A0A499FHX9;J3KQ69;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 1 0 RY(0.317)S(0.355)DLT(0.162)T(0.162)LVAFPS(0.001)S(0.001)S(0.001)VYPTKDEENNPLETEYGLSVYK;RY(0.312)S(0.341)DLT(0.148)T(0.148)LVAFPS(0.004)S(0.003)S(0.018)VY(0.017)PT(0.003)KDEENNPLET(0.004)EYGLSVYK ; 59.888 0.00012024 93376000 4164.8 3634.9 2864.7 3335.3 4783.7 3994 4004.2 7530.2 4433.8 4491.9 TRUE FALSE FALSE 3676.608457 3746.886961 3019.574347 3471.32795 4430.815981 3917.821104 4158.643335 8387.40753 4251.036887 4465.181979 0.823394987 0.839134212 0.676248888 0.777421383 0.992303562 0.877415775 0.931349126 1.878402172 0.952041128 1 12.12450326 -4.260967981 5.049763395 0.886074489 1.926181235 0.909224579 0.09521646 0.040625654 3.274229721 0.015398069 0.146821675 5.48E-05 4.260967981 1.040106747 NLKTS(ph)QEGSSDDAER ddPTM_HeLa_CUDC101_4h_R1 1 NLKTSQEGSSDDAER 15 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 NLKT(0.224)S(0.609)QEGS(0.083)S(0.083)DDAER 64.89 0.029596 19500000 964.86 845 967.33 964.07 1242.1 1378.3 1090.9 6631.4 1394 1743.9 TRUE FALSE FALSE 851.7605734 871.0334484 1019.626786 1003.388942 1150.472758 1352.011224 1132.976378 7386.291771 1336.53873 1733.527205 0.491345374 0.502463097 0.588180435 0.578813496 0.663660053 0.779919242 0.653567117 4.260845603 0.770993802 1 10.75949476 -4.260943875 24.99987575 0.704284358 4.260846683 0.98161708 0.147356402 5.25057437 264833.218 0.029340887 0.232216533 5.48E-05 4.260943875 3.556562325 EQNSALPTS(ph)SQDEELMEVVEK ddPTM_HeLa_CUDC101_4h_R1 1 EQNSALPTSSQDEELMEVVEK 21 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EQNSALPT(0.136)S(0.508)S(0.356)QDEELMEVVEK 122.8 5.15E-07 11612000 3902.4 3364.5 2777.7 2833 3047.5 3730.1 4153.8 16538 3960.1 4457.7 TRUE FALSE FALSE 3444.966588 3468.156257 2927.870864 2948.541985 2822.691996 3658.954557 4314.013457 18420.61907 3796.863002 4431.185402 0.777436797 0.782670085 0.660742126 0.665407045 0.63700607 0.825728157 0.973557427 4.157040927 0.856850404 1 12.11347698 -4.260937142 5.14479686 0.831386051 4.308347689 0.987479244 0.113537091 0.015981638 1.391774824 0.020828314 0.196193659 5.48E-05 4.260937142 3.476961638 up ETPS(ph)QENGPTAK ddPTM_HeLa_CUDC101_4h_R1 4 ETPSQENGPTAK 12 0 O15355 O15355 PPM1G Protein phosphatase 1G 1 0 ET(0.15)PS(0.849)QENGPT(0.001)AK;ETPS(1)QENGPTAK;ETPS(0.999)QENGPT(0.001)AK;ET(0.002)PS(0.998)QENGPTAK ;;; 219.97 3.31E-32 76647000 7269.6 5312.44 5250.52 5681.97 6711.7 7678.8 8040.7 47467.6 7119.56 7808.98 TRUE FALSE FALSE 6417.468508 5476.10998 5534.378993 5913.705296 6216.591263 7532.339684 8350.832492 52871.11971 6826.088723 7762.53184 0.826723631 0.705454109 0.712960553 0.761826865 0.800845831 0.970345738 1.075787213 6.81106639 0.8793637 1 12.92231157 -4.26093208 5.493093419 0.874337439 7.030218472 0.996875715 0.100019951 0.007021084 0.809482245 0.017854425 0.161638671 5.48E-05 4.26093208 6.155881033 up AEGAATEEEGTPKES(ph)EPQAAAEPAEAK ddPTM_HeLa_CUDC101_4h_R1 1 AEGAATEEEGTPKESEPQAAAEPAEAK 27 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 AEGAATEEEGT(0.129)PKES(0.871)EPQAAAEPAEAK 91.618 2.58E-06 119600000 3554.7 3610.1 3843.6 3418.8 3151.9 3871.9 3506.4 5029.8 3065.2 4265.6 TRUE FALSE FALSE 3138.023455 3721.322902 4051.396642 3558.233441 2919.390616 3798.049959 3641.643023 5602.372101 2938.851159 4240.228021 0.740060072 0.877623298 0.955466692 0.839160871 0.688498496 0.895718329 0.858831885 1.32124312 0.693088 1 12.04992613 -4.260931894 24.61536589 0.86539079 1.321243282 0.659849636 0.102333111 17.65587013 856083.3174 0.015298268 0.121123728 5.48E-05 4.260931894 0.455852492 EEEEGISQES(ph)SEEEQ ddPTM_HeLa_CUDC101_4h_R1 2 EEEEGISQESSEEEQ 15 0 P17096;P17096-2 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 EEEEGISQES(0.787)S(0.212)EEEQ;EEEEGISQES(0.813)S(0.187)EEEQ ; 166.86 1.22E-05 21366700 10567.8 7998.9 7106.8 7635.3 8119.5 7700.6 8061.9 9900.3 9580.2 8287.5 TRUE FALSE FALSE 9329.058504 8245.336628 7491.015105 7946.700537 7520.540661 7553.723885 8372.850184 11027.31013 9185.300101 8238.205581 1.132413899 1.000865607 0.909301793 0.964615469 0.912885772 0.916913739 1.016343924 1.33855729 1.114963691 1 13.00811441 -4.260923737 23.84803919 1.020846853 1.338557447 0.624070746 0.077602359 14.22525299 657534.8031 0.012951279 0.10266298 5.48E-05 4.260923737 0.317710594 EKGSETDS(ph)AQDQPVK ddPTM_HeLa_CUDC101_4h_R1 1 EKGSETDSAQDQPVK 15 1 K7EN42;B7Z8J4;P30419 K7EN42 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 1 0 EKGSETDS(1)AQDQPVK 108.71 0.0015715 21151000 4213.9 4058.6 4164 4104.9 4434.2 4215.8 4011.2 5293.8 3794.1 4373.1 TRUE FALSE FALSE 3719.95303 4183.640655 4389.118435 4272.315565 4107.0979 4135.390639 4165.913328 5896.424794 3637.705592 4347.088607 0.855734347 0.962400594 1.009668501 0.982799283 0.944792773 0.951301207 0.958322616 1.356407777 0.836814227 1 12.08583379 -4.260901955 5.468549004 0.944167364 1.37185837 0.842190704 0.053506581 0.046285728 5.232441774 0.008121267 0.073736057 5.48E-05 4.260901955 0.427691006 GGDPLEKQDQISGLSQS(ph)EVK ddPTM_HeLa_CUDC101_4h_R1 1 GGDPLEKQDQISGLSQSEVK 20 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 GGDPLEKQDQIS(0.085)GLS(0.415)QS(0.5)EVK 51.234 0.031329 10581000 410.15 365.95 392.11 454.12 311.4 471.17 434.52 2404 375.63 388.48 TRUE FALSE FALSE 362.0728387 377.2244857 413.3086527 472.6409765 288.4286424 462.1832173 451.279582 2677.661643 360.1463724 386.1693037 0.937601294 0.976837056 1.070278369 1.223921663 0.746896865 1.196840901 1.168605525 6.933905976 0.932612636 1 8.59308968 -4.260901187 5.724624921 0.997499653 7.124697778 0.994696505 0.12941168 0.006382139 0.884127733 0.01712545 0.151774123 5.48E-05 4.260901187 6.127198125 up GTS(ph)PSSSSRPQR ddPTM_HeLa_CUDC101_4h_R1 1 GTSPSSSSRPQR 12 1 H3BVG0;Q8N1F7;Q8N1F7-2 H3BVG0 NUP93 Nuclear pore complex protein Nup93 1 0 GT(0.35)S(0.637)PS(0.012)SSSRPQR 63.292 0.040625 51030000 1481.3 1232.5 1397.2 1594.6 1191.5 1189.9 1264 814.5 1245.2 1282.9 TRUE FALSE FALSE 1307.66426 1270.471864 1472.736858 1659.63468 1103.605419 1167.20464 1312.752903 907.2193877 1193.872329 1275.269254 1.025402483 0.996238136 1.154843853 1.30139943 0.865390125 0.915261335 1.029392734 0.711394386 0.936172754 1 10.31658617 -4.260887811 23.89505418 1.024632577 0.711394245 0.386960944 0.118379262 19.30118917 835736.2635 0.015857148 0.125464866 5.48E-05 4.260887811 -0.313238332 (ac)MESQEPTESS(ph)QNGK ddPTM_HeLa_CUDC101_4h_R1 1 MESQEPTESSQNGK 14 0 A6NFX8;Q9UKK9;C9JYY9;A6NCQ0;A6NJU6 A6NFX8 NUDT5 ADP-sugar pyrophosphatase 1 0 MES(0.002)QEPT(0.002)ES(0.168)S(0.829)QNGK 69.03 0.030517 6984600 1367.2 1222.7 1272.5 1288.1 1076.9 1530.4 1332.5 5268.2 1159.5 1312.3 TRUE FALSE FALSE 1206.938889 1260.369938 1341.295199 1340.634286 997.4592325 1501.21017 1383.894971 5867.910593 1111.704919 1304.494381 0.925215858 0.966175061 1.028210791 1.027704147 0.764632832 1.150798494 1.060866947 4.498226039 0.852211351 1 10.34927501 -4.260882789 5.926101115 0.97302867 4.598646137 0.991240246 0.099392812 0.007314029 1.186751261 0.01217868 0.106216336 5.48E-05 4.260882789 3.625617467 up SAS(ph)TEELRNPDFQK ddPTM_HeLa_CUDC101_4h_R1 1 SASTEELRNPDFQK 14 1 Q14678-2;Q14678 Q14678-2 KANK1 KN motif and ankyrin repeat domain-containing protein 1 1 0 S(0.012)AS(0.828)T(0.16)EELRNPDFQK 109.79 0.018119 6784700 1087.4 887.45 883.18 857.24 1082.3 972.63 1029.4 1344.5 1134.3 1042.6 TRUE FALSE FALSE 959.9366204 914.7912826 930.9273823 892.2019525 1002.460885 954.0787033 1069.104303 1497.552445 1087.543674 1036.398569 0.926223414 0.882663591 0.898232987 0.860867604 0.967254216 0.920571228 1.031557101 1.444958041 1.049348877 1 10.01736321 -4.260877608 2.877554073 0.944271102 1.533751442 0.888798322 0.053531058 0.093268961 1.075521975 0.007323093 0.12768962 5.48E-05 4.260877608 0.58948034 KPS(ph)VGVPPPAS(ph)PSYPR ddPTM_HeLa_CUDC101_4h_R1 1 KPSVGVPPPASPSYPR 16 1 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 2 0 KPS(1)VGVPPPAS(0.865)PS(0.135)YPR 87.509 0.00083418 0 2689 2533.4 1502.7 2088 2604.7 2450.3 2247.6 4840.8 1730.9 2569.8 TRUE FALSE FALSE 2373.799496 2611.451051 1583.940507 2173.157665 2412.55647 2403.56461 2334.290685 5391.857105 1659.551569 2554.514715 0.929256536 1.022288514 0.620055347 0.850712526 0.944428488 0.9409085 0.913790267 2.110716792 0.649654339 1 11.31883353 -4.260871551 24.98730658 0.933026022 2.110717154 0.871605977 0.140732142 9.624798286 423431.1788 0.015594895 0.12390508 5.48E-05 4.260871551 1.177691132 HHQT(ph)PDPHQEENHS(ph)PEVIGT(ph)WSLR ddPTM_HeLa_CUDC101_4h_R1 1 HHQTPDPHQEENHSPEVIGTWSLR 24 0 Q9BXL5 Q9BXL5 HEMGN Hemogen 3 0 HHQT(1)PDPHQEENHS(0.998)PEVIGT(0.986)WS(0.016)LR 45.011 0.0030693 0 555.29 566.62 208.69 459.47 352.03 502.05 559.07 3100 424 483.9 TRUE FALSE FALSE 490.199748 584.0768906 219.9724127 478.2091726 326.0614482 492.4742327 580.6335172 3452.891469 406.5225405 481.0217413 1.019080233 1.214242186 0.457302433 0.994152928 0.67785179 1.023808677 1.207083729 7.178244086 0.845123007 1 8.909958292 -4.260862067 5.270544767 0.964790238 7.440663501 0.988033963 0.206186052 0.010738567 1.035361488 0.027006804 0.250730141 5.48E-05 4.260862067 6.475873264 up SNDEEAFTFAR ddPTM_HeLa_CUDC101_4h_R1 1 SNDEEAFTFAR 11 0 P0DN79;P35520;P35520-2 P0DN79 CBS Cystathionine beta-synthase 0 0 110.93 0.037246 4020300 1094.9 1112.5 882.46 973.14 1155.2 1053.2 967.07 1159 1255.6 1330.4 FALSE FALSE TRUE 966.5574818 1146.774806 930.1684569 1012.828855 1069.983197 1033.111965 1004.370214 1290.935875 1203.843637 1322.486722 0.730863657 0.867135214 0.70334805 0.765851815 0.809069142 0.781188913 0.759455802 0.976142788 0.910287882 1 10.36903752 -9.391815651 1.030470698 1.004262859 0.790406492 0.371207971 0.077638672 0.329218273 0.605126052 0.052974331 0.01250344 4.06E-10 9.391815651 -0.213856367 SFTSSSPSS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 3 SFTSSSPSSPSR 12 0 O94875-12;O94875-11;O94875-9;O94875-4;O94875-10;O94875-5;O94875-3;H7BXR3;O94875-8;H7BZX1;O94875-2;O94875-7;O94875;H7C1R7;H7BZK1 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 SFTS(0.001)S(0.003)S(0.003)PS(0.01)S(0.97)PS(0.013)R;SFTS(0.003)S(0.028)S(0.018)PS(0.007)S(0.842)PS(0.103)R;SFTSSSPS(0.004)S(0.995)PSR ;; 225.55 1.61E-32 477049000 12593.2 10748.9 10439.5 10856.3 11990.5 11307 10725.8 11453.7 9996.4 11053.3 TRUE FALSE FALSE 11117.04419 11080.06087 11003.89095 11299.06684 11105.9847 11091.33781 11139.4977 12757.54291 9584.344161 10987.55448 1.011785125 1.008419197 1.001486816 1.028351382 1.010778579 1.009445535 1.013828666 1.161090298 0.872290934 1 13.4235827 -4.260858115 5.281821872 1.007902724 1.167516787 0.552198897 0.043518291 0.018256363 1.776274166 0.001135209 0.010525865 5.48E-05 4.260858115 0.159614062 SNEDQSMGNWQIK ddPTM_HeLa_CUDC101_4h_R1 2 SNEDQSMGNWQIK 13 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 128.88 0.0002319 30313000 3431.5 2743.96 2461.54 2411.07 3035.47 2981.86 2910.42 2266.07 2498.67 3075.7 FALSE FALSE TRUE 3029.264772 2828.498155 2594.618298 2509.403856 2811.549426 2924.985989 3022.675874 2524.030249 2395.673765 3057.4056 0.990795847 0.925130168 0.848633985 0.820762498 0.919586667 0.956688896 0.988640786 0.825546421 0.783564263 1 11.57809224 -7.187375972 3.552829215 0.9960182 0.897807108 0 0.084297891 0.174173493 4.275304478 0.008994903 0.010983509 6.50E-08 7.187375972 -0.098211092 SNEDQSMGNWQIK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 SNEDQSMGNWQIKR 14 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 SNEDQSMGNWQIK(1)R 240.37 3.69E-35 853840 0 0 0 0 158.95 186.49 135.71 0 73.967 0 FALSE TRUE FALSE 0 0 0 0 147.2245752 182.933014 140.9443802 0 70.91804895 0 0 SNEDQSMGNWQIKR ddPTM_HeLa_CUDC101_4h_R1 1 SNEDQSMGNWQIKR 14 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 94.023 0.008505 30528000 741.74 1046.9 1154 1082.1 1451.6 1276.5 845.45 1276.5 1102.3 537.89 FALSE FALSE TRUE 654.7943616 1079.153748 1216.388731 1126.232715 1344.51836 1252.152889 878.0592897 1421.8116 1056.862727 534.6906064 1.224622901 2.018276991 2.274939406 2.10632598 2.514572622 2.341826983 1.642182001 2.659129566 1.976587422 1 9.062560521 -7.236987025 2.375861889 1.088336266 2.240042913 0.451476709 0.379620771 0.084734531 0.913948336 0.043565336 0.052106611 5.79E-08 7.236987025 1.151706648 LVPS(ph)QEETKLSVEESEAAGDGVDTK ddPTM_HeLa_CUDC101_4h_R1 4 LVPSQEETKLSVEESEAAGDGVDTK 25 1 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 LVPS(0.726)QEET(0.271)KLS(0.003)VEES(0.001)EAAGDGVDTK;LVPS(0.982)QEET(0.018)KLSVEESEAAGDGVDTK;LVPS(0.719)QEET(0.197)KLS(0.08)VEES(0.003)EAAGDGVDTK;LVPS(0.516)QEET(0.455)KLS(0.025)VEES(0.005)EAAGDGVDTK ;;; 80.868 2.74E-05 722810000 4925.7 4498.34 4659.8 3993.64 5127.2 4709.3 6270.1 41074.9 3738.4 4995.91 TRUE FALSE FALSE 4348.316913 4636.928524 4911.722883 4156.517901 4748.976671 4619.477949 6511.939857 45750.70059 3584.30157 4966.194105 0.875583358 0.933698608 0.989031596 0.836962433 0.956260784 0.930184735 1.311253592 9.212426985 0.721740128 1 12.27792494 -4.260856806 5.060363797 0.940765574 9.608769181 0.998869464 0.083477466 0.002961403 0.240711394 0.00937214 0.089353193 5.48E-05 4.260856806 8.668003607 up IISPGS(ph)STPSST(ph)RSPPPGRDESYPR ddPTM_HeLa_CUDC101_4h_R1 1 IISPGSSTPSSTRSPPPGRDESYPR 25 2 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 2 0 IIS(0.009)PGS(0.357)S(0.29)T(0.29)PS(0.207)S(0.207)T(0.585)RS(0.056)PPPGRDESYPR 76.678 0.00030161 21533000 3214.8 3102.4 3394.3 3021.5 3366 3462 3056.5 4562 3028.1 3497.1 TRUE FALSE FALSE 2837.966017 3197.981267 3577.806125 3144.72983 3117.696886 3395.968118 3174.390229 5081.31964 2903.280436 3476.299094 0.816375674 0.919938469 1.029199741 0.904620041 0.896843684 0.976891811 0.913152218 1.461703813 0.835164167 1 11.7633365 -4.260843079 24.98985848 0.922403225 1.461703979 0.867000499 0.063489721 14.76086002 618450.5806 0.010378633 0.08272332 5.48E-05 4.260843079 0.539300754 SNEEGSEEK(ac)GPEVR ddPTM_HeLa_CUDC101_4h_R1 2 SNEEGSEEKGPEVR 14 1 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 1 ; SNEEGSEEK(1)GPEVR;SNEEGSEEK(1)GPEVR 295.29 2.58E-102 5318000 1744.3 624.89 698.07 535.74 1913.56 1505.06 1398.84 1281.63 1578.05 1476.24 FALSE TRUE FALSE 1539.835798 644.1421202 735.8097757 557.5897929 1772.400491 1476.353488 1452.793727 1427.525579 1513.002111 1467.459259 1.049320987 0.438950599 0.501417516 0.379969522 1.20780218 1.006060972 0.990006175 0.972787197 1.031035173 1 10.51910473 SNEEGSEEKGPEVR ddPTM_HeLa_CUDC101_4h_R1 2 SNEEGSEEKGPEVR 14 1 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 0 ; ; 88.78 0.019974 26961000 2934.3 2558.8 2713 2635.7 3464.2 3106.5 2949.1 3273.3 3679.1 3174.5 FALSE FALSE TRUE 2590.345802 2637.633595 2859.672986 2743.195238 3208.652868 3047.248688 3062.847775 3645.919241 3527.445941 3155.617933 0.820868007 0.835853279 0.906216484 0.869305251 1.016806513 0.965658313 0.970601587 1.155374104 1.11783049 1 11.62370683 -1 0.696546587 0.907274344 30.54890912 0.314245777 0.088261473 179.4386485 0.900985619 0.012986278 8290.841324 0.1 1 29.64163478 S(ph)QEEPKDTFEHDPSESIDEFNK ddPTM_HeLa_CUDC101_4h_R1 3 SQEEPKDTFEHDPSESIDEFNK 22 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 S(0.578)QEEPKDT(0.42)FEHDPS(0.002)ESIDEFNK;S(0.838)QEEPKDT(0.161)FEHDPSESIDEFNK;S(0.792)QEEPKDT(0.17)FEHDPS(0.038)ESIDEFNK ;; 90.22 0.00021343 370246500 9867.6 7591.2 7278.5 7411.3 7601.9 8743 8794.5 26700 9207.1 8520 TRUE FALSE FALSE 8710.934886 7825.075874 7671.997726 7713.564848 7041.122982 8576.241842 9133.706811 29739.42007 8827.579441 8469.322661 1.028527928 0.923931722 0.905857296 0.910765259 0.831367898 1.012624289 1.07844596 3.511428395 1.042300523 1 13.04803088 -4.260832861 5.285228769 0.981109674 3.617400909 0.992550924 0.066086953 0.010078539 0.98325285 0.010357543 0.096029054 5.48E-05 4.260832861 2.636291235 up SNLGSVVLQLK ddPTM_HeLa_CUDC101_4h_R1 1 SNLGSVVLQLK 11 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 0 143.97 0.0015389 416810 228 251.49 200.07 218.9 260.3 199.19 0 193.94 0 75.056 FALSE FALSE TRUE 201.2741856 259.2381088 210.8863894 227.8276882 241.0981876 195.3907826 0 216.0173457 0 74.60956357 2.697699544 3.474596237 2.826532944 3.053598993 3.231464923 2.618843661 0 2.895303703 0 1 6.221288664 -9.125614342 0.950003925 1.025968798 2.576807 0.397687993 0.976520367 0.570753399 0.951204989 0.578354968 0.179960302 7.49E-10 9.125614342 1.550838203 DLFDLNSS(ph)EEDDTEGFSER ddPTM_HeLa_CUDC101_4h_R1 1 DLFDLNSSEEDDTEGFSER 19 0 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 0 DLFDLNS(0.315)S(0.685)EEDDTEGFSER 186.36 1.89E-11 10139000 2905.8 2293.7 2555.3 2745.6 2757 2538.4 2316.6 1898 2411.1 2362.6 TRUE FALSE FALSE 2565.186529 2364.366178 2693.447247 2857.577435 2553.621603 2489.984249 2405.952038 2114.060648 2311.713437 2348.54715 1.092243998 1.006735666 1.146856791 1.21674263 1.087319709 1.060223232 1.024442723 0.900156783 0.984316384 1 11.19755284 -4.260830039 2.23244938 1.065564371 0.857304152 0.376428419 0.067108667 0.592971162 3.345125135 0.010247791 0.243099185 5.48E-05 4.260830039 -0.208260219 MS(ph)ADMSEIEAR ddPTM_HeLa_CUDC101_4h_R1 2 MSADMSEIEAR 11 0 Q9UG54;O43318-4;O43318-3;O43318-2;O43318 Q9UG54 DKFZp586F0420;MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 0 MS(0.956)ADMS(0.044)EIEAR;MS(1)ADMSEIEAR ; 212.68 1.26E-23 84636000 3615.7 3384.3 3229.9 3361.6 3589.6 3227.7 3245.6 1571.55 3302.7 3466.6 TRUE FALSE FALSE 3191.873127 3488.566272 3404.518164 3498.700578 3324.802359 3166.137 3370.783879 1750.4489 3166.561308 3445.980509 0.926259774 1.012358097 0.987967911 1.015299004 0.964834929 0.918791326 0.978178452 0.507968311 0.918914457 1 11.75069883 -4.26082853 24.95295689 0.970070277 0.507968166 0.939586356 0.035084147 8.444390335 344866.4106 0.005064173 0.040416175 5.48E-05 4.26082853 -0.462102111 KKDDSFLGK(ac)LGGTLAR ddPTM_HeLa_CUDC101_4h_R1 2 KKDDSFLGKLGGTLAR 16 3 Q9NVD7-2;Q9NVD7 Q9NVD7-2 PARVA Alpha-parvin 0 1 ; K(0.001)K(0.001)DDSFLGK(0.998)LGGTLAR;KKDDSFLGK(1)LGGTLAR 118.5 0.022817 1619720 699.45 958.41 1241.19 1419.27 1802.97 1286.83 1561.03 2227.7 297.78 374.24 FALSE TRUE FALSE 617.4615313 987.9374761 1308.292486 1477.153965 1669.968495 1262.285862 1621.23945 2481.292363 285.5053824 372.0140038 1.659780344 2.655645932 3.516782896 3.970694517 4.488993634 3.393113831 4.358006509 6.669889675 0.767458696 1 8.53921312 -3.882420938 0.196987631 0.386050332 11.31445798 0.865331622 0.626834981 4.581368797 0.142822857 0.867397599 12.72563247 0.000131093 3.882420938 10.92840765 up VAS(ph)LTLHNK ddPTM_HeLa_CUDC101_4h_R1 1 VASLTLHNK 9 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3 RAI14 Ankycorbin 1 0 VAS(0.895)LT(0.105)LHNK 91.701 0.016852 9039600 3833.7 3441.4 3070.5 3314.2 3784.7 3552 3296.9 2277.8 3226.5 3411.8 TRUE FALSE FALSE 3384.319498 3547.425455 3236.500518 3449.367401 3505.510221 3484.251518 3424.062537 2537.095545 3093.502304 3391.506462 0.997880893 1.045973373 0.954295843 1.017060542 1.03361449 1.027346271 1.009599296 0.748073334 0.912132216 1 11.72771053 -4.260826097 24.9999502 1.005063603 0.748073255 0.79719046 0.038000815 9.775152539 398383.1293 0.003200724 0.025332961 5.48E-05 4.260826097 -0.256990348 TIS(ph)ETIER ddPTM_HeLa_CUDC101_4h_R1 2 TISETIER 8 0 P26639;P26639-2 P26639 TARS "Threonine--tRNA ligase, cytoplasmic" 1 0 TIS(0.522)ET(0.477)IER;T(0.012)IS(0.964)ET(0.024)IER ; 109.83 0.011679 14952100 3684.7 2572.89 2839.9 2806.2 3035.2 2841.8 2870.7 3237.3 2389.4 2931.6 TRUE FALSE FALSE 3252.785052 2652.157691 2993.433584 2920.648965 2811.299343 2787.5974 2981.423861 3605.821146 2290.907921 2914.162713 1.116198844 0.910092521 1.027201937 1.002225769 0.964702256 0.956568893 1.02308078 1.237343794 0.786129035 1 11.50886572 -4.260820197 24.32562615 1.026733115 1.237343888 0.30007655 0.094656824 24.6317751 967355.1996 0.009498219 0.075720824 5.49E-05 4.260820197 0.210610773 MDS(ph)FDEDLAR ddPTM_HeLa_CUDC101_4h_R1 2 MDSFDEDLAR 10 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 MDS(1)FDEDLAR;MDS(1)FDEDLAR ; 149.49 0.00052199 14510300 9815.4 8228.2 7476 7808.4 8530.2 9003.2 8716 13730.7 9404.4 9506.3 TRUE FALSE FALSE 8664.853691 8481.701089 7880.175174 8126.860303 7900.944141 8831.47896 9052.17904 15293.74739 9016.746651 9449.756105 0.9169394 0.897557672 0.833902493 0.860007413 0.836100324 0.934572159 0.957927267 1.618427737 0.954177711 1 13.20606138 -4.260817844 5.17148539 0.929378285 1.649330666 0.938489648 0.054247472 0.03534212 3.144632311 0.009598457 0.090238533 5.49E-05 4.260817844 0.71995238 KHSPS(ph)PPPPTPTESR ddPTM_HeLa_CUDC101_4h_R1 1 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 KHS(0.252)PS(0.748)PPPPTPTESR 91.14 0.01544 31080000 995.44 866.85 986.6 1158.2 924.03 1169.8 1001.9 1341.2 1019 1239.5 TRUE FALSE FALSE 878.7560322 893.556621 1039.93858 1205.436402 855.8661478 1147.488014 1040.543619 1493.876787 976.9963887 1232.127399 0.713202249 0.725214472 0.844018712 0.97833747 0.694624719 0.931306304 0.844509764 1.212436951 0.792934553 1 10.26693572 -4.260790706 24.34647137 0.851086271 1.212437091 0.538321699 0.103737253 28.07856268 1053509.816 0.017379834 0.13900672 5.49E-05 4.260790706 0.36135082 TTTPGPS(ph)LSQGVSVDEK ddPTM_HeLa_CUDC101_4h_R1 1 TTTPGPSLSQGVSVDEK 17 0 A0A0C4DG07;O60934 A0A0C4DG07 NBN Nibrin 1 0 TTTPGPS(0.864)LS(0.136)QGVSVDEK 180.62 8.75E-09 52747000 1235 865.91 857.9 899.82 1229.3 1361.2 1098.7 4598.1 1081.2 1014 TRUE FALSE FALSE 1090.235172 892.5876607 904.280669 936.518549 1138.616988 1335.237378 1141.077227 5121.529118 1036.632478 1007.968683 1.081616116 0.885531144 0.897131711 0.929114728 1.129615441 1.324681412 1.13205623 5.081039922 1.028437189 1 9.9772351 -4.260770867 5.987581988 1.038401032 5.192232684 0.989933813 0.122120713 0.009442002 1.606450733 0.018230864 0.158531201 5.49E-05 4.260770867 4.153831652 up KAALLAQYADVTDEEDEADEKDDSGAT(ph)TMNIGSDK ddPTM_HeLa_CUDC101_4h_R1 1 KAALLAQYADVTDEEDEADEKDDSGATTMNIGSDK 35 2 Q96MW1 Q96MW1 CCDC43 Coiled-coil domain-containing protein 43 1 0 KAALLAQYADVT(0.028)DEEDEADEKDDS(0.144)GAT(0.401)T(0.401)MNIGS(0.026)DK 57.484 0.00041097 45286000 3365.8 3486.4 3483.2 2696.9 3640.9 3403.9 3184.4 3640.1 3779.2 3537.6 TRUE FALSE FALSE 2971.266026 3593.811852 3671.512328 2806.891239 3372.318061 3338.976279 3307.223375 4054.47427 3623.419776 3516.558198 0.844935832 1.021968541 1.044064145 0.798192744 0.958982582 0.949501214 0.940471674 1.152966634 1.030388116 1 11.77994838 -4.260744874 5.904856307 0.935138428 1.159265519 0.348346052 0.077685067 0.107601001 17.16139662 0.010995758 0.096239853 5.49E-05 4.260744874 0.224127092 MQS(ph)LQLDCVAVPSSR ddPTM_HeLa_CUDC101_4h_R1 1 MQSLQLDCVAVPSSR 15 0 Q13546-2;Q13546 Q13546-2 RIPK1 Receptor-interacting serine/threonine-protein kinase 1 1 0 MQS(1)LQLDCVAVPSSR 108.47 0.0028442 10069000 1821.3 1261.9 1001.1 1188.1 1296 1311.1 1350.9 1935.1 1342.1 1155.3 TRUE FALSE FALSE 1607.809975 1300.777643 1055.222494 1236.555853 1200.396662 1286.092952 1403.004666 2155.383962 1286.77807 1148.428224 1.400009109 1.132659069 0.918840614 1.076737603 1.045251794 1.119872296 1.221673794 1.876812078 1.120468866 1 10.16544498 -4.260742912 3.762130253 1.147738761 1.953003736 0.76942526 0.124593206 0.134685371 3.61088476 0.023954917 0.300360125 5.49E-05 4.260742912 0.805264975 S(ph)RTPPSAPSQSR ddPTM_HeLa_CUDC101_4h_R1 4 SRTPPSAPSQSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.499)RT(0.499)PPSAPS(0.001)QSR;S(0.5)RT(0.5)PPSAPSQSR;S(0.988)RT(0.012)PPSAPSQSR;S(0.949)RT(0.051)PPSAPSQSR ;;; 111.63 0.0030013 1823303200 4268.4 3981.82 3710.4 3564.05 4294.35 3825.69 3672.14 4764.78 4366.81 3894.75 TRUE FALSE FALSE 3768.064622 4104.495155 3910.995447 3709.407364 3977.564356 3752.721337 3813.77567 5307.183295 4186.808244 3871.583854 0.973261788 1.060159178 1.010179708 0.958111074 1.02737394 0.969298736 0.985068596 1.370804171 1.081420008 1 11.91870817 -4.26071839 24.99178587 0.992906805 1.370804288 0.879103313 0.040136727 9.663827938 334912.9555 0.00390848 0.031345709 5.49E-05 4.26071839 0.377897483 EQNSALPTSS(ph)QDEELMEVVEK ddPTM_HeLa_CUDC101_4h_R1 1 EQNSALPTSSQDEELMEVVEK 21 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 EQNSALPT(0.005)S(0.283)S(0.712)QDEELMEVVEK 53.895 0.022277 11916000 4684.1 3746.8 3288.6 3334.7 3473.1 4528.2 4505.5 16163 4721.9 4666.3 TRUE FALSE FALSE 4135.036899 3862.234467 3466.391663 3470.70348 3216.896332 4441.832129 4679.278644 18002.93059 4527.261283 4638.54464 0.891451354 0.832639279 0.747301564 0.748231126 0.693514148 0.957591761 1.008781635 3.881159282 0.976008993 1 12.17945651 -4.260714742 5.282627412 0.895492813 4.006610629 0.986721406 0.104747135 0.014292078 1.391061419 0.017293901 0.160623519 5.49E-05 4.260714742 3.111117816 up SQEEPKDT(ph)FEHDPSESIDEFNK ddPTM_HeLa_CUDC101_4h_R1 1 SQEEPKDTFEHDPSESIDEFNK 22 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 S(0.118)QEEPKDT(0.882)FEHDPS(0.001)ESIDEFNK 77.641 0.00097031 7047700 4283.5 3766.1 3419 3408 3486.4 4036.6 3733 9403.4 3744.1 3599.7 TRUE FALSE FALSE 3781.394623 3882.129077 3603.841482 3546.992971 3229.215218 3959.60858 3876.98306 10473.84505 3589.766613 3578.288824 1.056760594 1.084912165 1.007141027 0.991253961 0.902446777 1.106564834 1.083474043 2.92705412 1.003207619 1 11.80505412 -4.260711564 5.584557848 1.025079086 2.993737588 0.991212239 0.053721977 0.009187155 1.138510249 0.007626385 0.068624783 5.49E-05 4.260711564 1.968658502 up KIS(ph)VVSATK ddPTM_HeLa_CUDC101_4h_R1 1 KISVVSATK 9 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 KIS(0.998)VVS(0.002)ATK 101.6 0.033237 20892000 760.3 785.45 638.44 744.67 1051.2 871.75 812.96 2051 645.94 898.07 TRUE FALSE FALSE 671.1787865 809.6487835 672.9559976 775.0408613 973.6550703 855.1228212 844.3161395 2284.47755 619.3140798 892.7282397 0.751828784 0.906937574 0.753819547 0.868171104 1.090651138 0.95787585 0.945770619 2.5589843 0.693731925 1 9.802077253 -4.26069475 5.526488736 0.892597993 2.619494399 0.949402156 0.115959477 0.023060788 2.728747005 0.016539275 0.149695472 5.49E-05 4.26069475 1.726896406 up NTENCDFLFS(ph)PPEVTGR ddPTM_HeLa_CUDC101_4h_R1 2 NTENCDFLFSPPEVTGR 17 0 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91;Q8IX09;C9JWI7;F8WC55 A0A494BZT8 TACC3;ERIC-1s Transforming acidic coiled-coil-containing protein 3 1 0 NTENCDFLFS(0.83)PPEVT(0.17)GR;NT(0.001)ENCDFLFS(0.99)PPEVT(0.008)GR ; 85.046 0.0095175 18147000 1414.8 1849.77 1498.25 1394.34 1421.28 1558.08 1376.03 564.08 1953.92 1420.6 TRUE FALSE FALSE 1248.959289 1906.759221 1579.249927 1451.207212 1316.435006 1528.36222 1429.103938 628.2925871 1873.378591 1412.150208 0.884437988 1.35025241 1.118329989 1.027657825 0.93222024 1.08229437 1.012005614 0.444919091 1.326614251 1 10.46367784 -4.260686646 24.99999997 0.999982004 0.444918919 0.531260989 0.164015899 34.18448924 1135129.54 0.019338306 0.155406943 5.49E-05 4.260686646 -0.555063085 LPSS(ph)PLGCR ddPTM_HeLa_CUDC101_4h_R1 2 LPSSPLGCR 9 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 0 LPS(0.051)S(0.949)PLGCR;LPS(0.031)S(0.969)PLGCR ; 97.813 0.019792 48909000 5995 5376.9 4557.4 4444.1 5085.5 4573.8 4441.6 2805.3 6735.7 3663 TRUE FALSE FALSE 5292.275188 5542.555916 4803.786829 4625.349607 4710.352797 4486.562385 4612.914 3124.644013 6458.051595 3641.212313 1.453437683 1.522173232 1.319282265 1.270277372 1.293622121 1.232161709 1.266862134 0.858132881 1.773599296 1 11.83020315 -4.260686483 23.94663102 1.258542197 0.858132686 0.244295798 0.211053615 35.81660279 1138763.291 0.026445781 0.212010966 5.49E-05 4.260686483 -0.40040951 SGTSTPTTPGSTAITPGT(ph)PPSYSSR ddPTM_HeLa_CUDC101_4h_R1 2 SGTSTPTTPGSTAITPGTPPSYSSR 25 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 SGTSTPTTPGSTAIT(0.105)PGT(0.882)PPS(0.009)Y(0.001)S(0.001)S(0.001)R;SGTSTPTTPGS(0.004)T(0.016)AIT(0.025)PGT(0.916)PPS(0.016)YS(0.006)S(0.016)R ; 108.31 3.60E-07 258100000 3363.1 3035.7 3380.4 3213.4 3648.7 3427.1 3349.7 4342.6 3488.3 3838.1 TRUE FALSE FALSE 2968.882516 3129.226319 3563.154649 3344.456341 3379.54267 3361.733777 3478.899051 4836.944031 3344.510798 3815.270811 0.778157741 0.820184588 0.933919196 0.876597366 0.885793653 0.881125861 0.911835417 1.267785243 0.876611639 1 11.89756975 -4.260670063 4.517943823 0.887974865 1.293042188 0.807186331 0.056240225 0.09354535 4.844056071 0.011518614 0.120167479 5.49E-05 4.260670063 0.405067323 QAS(ph)TDAGTAGALTPQHVR ddPTM_HeLa_CUDC101_4h_R1 3 QASTDAGTAGALTPQHVR 18 0 P46937-6;P46937-7;P46937;P46937-9;P46937-5;P46937-3;P46937-2;P46937-8 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 QAS(0.786)T(0.214)DAGTAGALTPQHVR;QAS(0.497)T(0.497)DAGT(0.005)AGALT(0.001)PQHVR;QAS(0.788)T(0.212)DAGTAGALTPQHVR ;; 224.12 4.05E-33 393534000 4838.9 3842.2 3701.2 3615.3 4892.7 3768.3 4093 6880.6 4691.4 4788.1 TRUE FALSE FALSE 4271.691477 3960.573628 3901.298068 3762.747561 4531.775269 3696.425956 4250.868381 7663.859692 4498.018506 4759.620168 0.897485792 0.832119683 0.819665841 0.790556269 0.952129605 0.776622047 0.893110843 1.610183044 0.945037282 1 12.21663073 -4.260664367 24.81414455 0.908640836 1.610183287 0.892457294 0.075546711 16.30851793 522053.438 0.012554929 0.10108657 5.49E-05 4.260664367 0.701542451 (ac)MDLAAAAEPGAGS(ph)QHLEVRDEVAEK ddPTM_HeLa_CUDC101_4h_R1 2 MDLAAAAEPGAGSQHLEVRDEVAEK 25 1 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 0 MDLAAAAEPGAGS(1)QHLEVRDEVAEK;MDLAAAAEPGAGS(1)QHLEVRDEVAEK ; 58.324 7.62E-07 104164000 1792.07 1266.62 1438.31 1269.55 2002.76 2103.4 2429.4 25149 0 1232.33 TRUE FALSE FALSE 1582.006271 1305.643061 1516.069389 1321.327736 1855.020385 2063.28115 2523.102772 28011.8605 0 1225.000046 1.291433642 1.06583103 1.237607618 1.078634846 1.514302298 1.684311079 2.059675654 22.86682404 0 1 10.25856609 -4.260640196 5.225613297 1.213236854 23.80931226 0.995572521 0.433542323 0.004362338 0.405417598 0.037686846 0.35272513 5.49E-05 4.260640196 22.5960754 up STAVTTS(ph)SAK ddPTM_HeLa_CUDC101_4h_R1 1 STAVTTSSAK 10 0 Q9UKM9-2;Q9UKM9;Q5QPM0;Q5QPL9;Q5QPM1 Q9UKM9-2 RALY RNA-binding protein Raly 1 0 STAVT(0.01)T(0.049)S(0.865)S(0.076)AK 96.756 0.019774 11111000 1809.8 1554.6 1587.4 1374.9 1452.8 1593.6 1853.7 7252.1 1928.1 1636.5 TRUE FALSE FALSE 1597.657987 1602.495383 1673.219646 1430.974365 1345.629838 1563.204735 1925.19783 8077.64975 1848.622902 1626.766025 0.982106807 0.985080435 1.028555809 0.879643626 0.827180933 0.960927823 1.18345097 4.965464993 1.136379094 1 10.66779105 -4.260631643 4.793158395 0.974627005 5.19059907 0.995722685 0.078112971 0.006580583 0.429102455 0.009281118 0.092284568 5.49E-05 4.260631643 4.215972065 up LFDVCGSQDFES(ph)DLDR ddPTM_HeLa_CUDC101_4h_R1 2 LFDVCGSQDFESDLDR 16 0 E7EN38;A0A494C1B7;A0A1W2PQ90;Q92878-3;Q92878;Q92878-2 E7EN38 RAD50 DNA repair protein RAD50 1 0 LFDVCGS(0.039)QDFES(0.961)DLDR;LFDVCGS(0.104)QDFES(0.896)DLDR ; 230.82 4.36E-43 13264400 4687.4 2931.2 3185.2 3041.3 3315.3 3405.25 3362.1 5428.6 3728.7 3397.8 TRUE FALSE FALSE 4137.950078 3021.506798 3357.401547 3165.33736 3070.736924 3340.30053 3491.777323 6046.569881 3575.001408 3377.589734 1.225119213 0.89457484 0.994022901 0.937158627 0.90915036 0.988959818 1.033807418 1.790202587 1.058447499 1 11.72177838 -4.260630657 24.71231808 1.050817231 1.790202859 0.845801104 0.098874939 21.86393492 667958.4364 0.017887094 0.144620383 5.49E-05 4.260630657 0.739385629 (ac)S(ph)QKQEEENPAEETGEEKQDTQEK ddPTM_HeLa_CUDC101_4h_R1 4 SQKQEEENPAEETGEEKQDTQEK 23 2 O43768;O43768-2;O43768-3;A0A1W2PRU0;A6NMQ3;Q5T5H1;O43768-9;O43768-4;O43768-8 O43768 ENSA Alpha-endosulfine 1 0 S(1)QKQEEENPAEETGEEKQDTQEK;S(1)QKQEEENPAEETGEEKQDTQEK;S(0.962)QKQEEENPAEET(0.038)GEEKQDTQEK;S(1)QKQEEENPAEETGEEKQDTQEK ;;; 92.932 6.52E-06 355533000 7242.1 6549.97 6120.29 5831.1 6394.42 6564 6486.58 17215.6 7342.87 8440.4 TRUE FALSE FALSE 6393.192016 6751.766812 6451.17139 6068.917462 5922.716376 6438.802636 6736.769563 19175.35432 7040.193791 8390.196125 0.76198362 0.804720976 0.768893992 0.723334398 0.705909169 0.7674198 0.802933503 2.285447686 0.839097643 1 13.03448882 -4.26062751 24.98614903 0.836760304 2.28544814 0.964048728 0.085916477 12.33796159 379646.036 0.01693692 0.136644689 5.49E-05 4.26062751 1.448687836 ST(ph)PFIVPS(ph)SPTEQEGR ddPTM_HeLa_CUDC101_4h_R1 2 STPFIVPSSPTEQEGR 16 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 S(0.436)T(0.564)PFIVPS(0.555)S(0.334)PT(0.111)EQEGR;S(0.406)T(0.594)PFIVPS(0.499)S(0.34)PT(0.161)EQEGR ; 144.08 0.0010014 7453900 2366 2091.59 2268.9 1546.69 1912.12 2044.5 1833.78 6514.1 1932.82 2050.85 TRUE FALSE FALSE 2088.661067 2156.029409 2391.563597 1609.770704 1771.066717 2005.504569 1904.509509 7255.638813 1853.148342 2038.651453 1.024530733 1.057576275 1.173110584 0.78962527 0.868744245 0.983740779 0.934200648 3.559038404 0.909006951 1 10.99339942 -4.260607175 24.99993676 0.99558904 3.559039203 0.982681542 0.103019189 5.869247845 176285.3433 0.01376853 0.111342318 5.49E-05 4.260607175 2.563450163 SLS(ph)GSSPCPK ddPTM_HeLa_CUDC101_4h_R1 1 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.183)LS(0.633)GS(0.183)S(0.001)PCPK 155.33 3.11E-06 0 2502.8 2101.5 2431.1 1990 2331.5 2426 2129.6 3301.5 2357.9 2278 TRUE FALSE FALSE 2209.425578 2166.244724 2562.53262 2071.160802 2159.50989 2379.728092 2211.739385 3677.329415 2260.706364 2264.450355 0.975700604 0.956631582 1.131635593 0.914641735 0.953657423 1.050907602 0.9767224 1.623939075 0.998346623 1 11.1449452 -4.260596451 24.99155039 0.992044558 1.623939273 0.91677071 0.056810445 12.48446413 370081.908 0.007147973 0.058002695 5.49E-05 4.260596451 0.631894715 SSLGSLQT(ph)PEAVTTR ddPTM_HeLa_CUDC101_4h_R1 2 SSLGSLQTPEAVTTR 15 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 SSLGS(0.003)LQT(0.918)PEAVT(0.06)T(0.018)R;SSLGSLQT(0.999)PEAVTTR ; 171.87 3.04E-06 37136000 5751 4906.8 4685.1 4462.4 4851 4167.9 3850.9 2142.06 4944.6 5278 TRUE FALSE FALSE 5076.876498 5057.972692 4938.390678 4644.39596 4493.151395 4088.404252 3999.430503 2385.903452 4740.781495 5246.606221 0.967649617 0.964046562 0.941254302 0.885219085 0.856391962 0.779247399 0.762289056 0.454751767 0.90359011 1 12.3571688 -3.881577764 0.52705585 0.985128513 1.74E-18 0.909568859 0.045678218 0.822310919 0.116321314 0.006986946 0.543735676 0.000131348 3.881577764 -0.985128513 down GNLLHFPS(ph)SQGEEEKEK ddPTM_HeLa_CUDC101_4h_R1 2 GNLLHFPSSQGEEEKEK 17 1 Q12888;Q12888-3;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GNLLHFPS(0.5)S(0.5)QGEEEKEK;GNLLHFPS(0.5)S(0.5)QGEEEKEK ; 60.489 0.022725 67431000 7060 4763.1 4973.2 4464.8 5411.3 6278.5 6328.1 15877.9 6426.6 6774.6 TRUE FALSE FALSE 6232.437502 4909.845465 5242.066235 4646.893843 5012.11918 6158.748073 6572.176937 17685.37596 6161.692828 6734.304378 0.925476063 0.729079826 0.77841243 0.690033236 0.744266802 0.914533666 0.975925139 2.626162253 0.914970943 1 12.71731321 -4.260596152 4.995270719 0.89718067 2.712611291 0.958957391 0.109849938 0.029434291 2.267458279 0.019065879 0.183976707 5.49E-05 4.260596152 1.815430621 up IISIFS(ph)GTEK ddPTM_HeLa_CUDC101_4h_R1 1 IISIFSGTEK 10 0 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 IIS(0.211)IFS(0.648)GT(0.141)EK 158.42 7.90E-05 14666000 3645.5 2529.3 2525.5 2509.8 2904.3 2633.3 2699.2 4010 2455.2 2732.1 TRUE FALSE FALSE 3218.180016 2607.224735 2662.036169 2612.160492 2690.055575 2583.07419 2803.309048 4466.482191 2353.995617 2715.849348 1.184962641 0.960003447 0.980185507 0.961820837 0.990502502 0.951111 1.032203443 1.644598657 0.866762223 1 11.40718774 -4.26059469 24.89116172 1.046673845 1.644598857 0.806884145 0.092357889 23.65648994 696978.1191 0.013592167 0.109639281 5.49E-05 4.26059469 0.597925011 GIITDS(ph)FGR ddPTM_HeLa_CUDC101_4h_R1 3 GIITDSFGR 9 0 C9JUH3;A0A0A0MT72;Q9BSQ5-3;Q9BSQ5-4;Q9BSQ5;Q9BSQ5-2 C9JUH3 CCM2 Cerebral cavernous malformations 2 protein 1 0 GIIT(0.001)DS(0.999)FGR;GIIT(0.053)DS(0.947)FGR;GIIT(0.029)DS(0.971)FGR ;; 98.04 0.01958 107443000 8084 7908.3 6257.7 6480.3 7754.5 7745.8 7090.3 8625.3 6845.1 7911.4 TRUE FALSE FALSE 7136.405775 8151.945349 6596.010191 6744.594644 7182.465984 7598.06177 7363.775246 9607.169287 6562.942081 7864.342641 0.907438307 1.03657047 0.838723653 0.857617089 0.913295149 0.966140734 0.936349747 1.22161123 0.834518838 1 12.94111046 -4.260567254 24.51784102 0.94320545 1.221611339 0.632069984 0.066891094 27.0895517 761391.8341 0.008631032 0.069746361 5.49E-05 4.260567254 0.278405889 VWS(ph)PLVTEEGKR ddPTM_HeLa_CUDC101_4h_R1 2 VWSPLVTEEGKR 12 1 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 VWS(1)PLVTEEGKR;VWS(0.983)PLVT(0.017)EEGKR ; 96.334 0.025717 59662000 4572.6 4091.9 3905.5 3778.3 3946.9 4051.3 3245.2 1789.38 4674.9 4684.5 TRUE FALSE FALSE 4036.60676 4217.966589 4116.643143 3932.395405 3655.74505 3974.028202 3370.368451 1993.075786 4482.198643 4656.636386 0.866850324 0.905796854 0.88403792 0.844471219 0.785061308 0.853411749 0.723777459 0.428007605 0.962539969 1 12.18507252 -3.876068499 0.61365276 0.92979016 3.87E-50 0.862574744 0.056456962 1.532890481 0.284997729 0.012039914 1.116945948 0.000133024 3.876068499 -0.92979016 down LSS(ph)GFDDIDLPSAVK ddPTM_HeLa_CUDC101_4h_R1 4 LSSGFDDIDLPSAVK 15 0 Q9Y446;Q9Y446-2;E9PKC4 Q9Y446 PKP3 Plakophilin-3 1 0 LS(0.031)S(0.969)GFDDIDLPSAVK;LS(0.025)S(0.975)GFDDIDLPSAVK;LS(0.039)S(0.961)GFDDIDLPSAVK;LS(0.007)S(0.993)GFDDIDLPSAVK ;;; 326.57 5.98E-167 68867400 10538.8 6697.97 5882.19 7349.22 5712.74 6637.03 9317.2 28687.3 6054.08 6421.63 TRUE FALSE FALSE 9303.45784 6904.326517 6200.198984 7648.952958 5291.322552 6510.439711 9676.567525 31952.94627 5804.52826 6383.433859 1.457437806 1.081600698 0.97129525 1.198250523 0.828914761 1.019896165 1.515887489 5.00560466 0.909311256 1 12.64011699 -4.260563321 3.883365423 1.155614294 5.380469404 0.975625492 0.185496132 0.030676653 0.916541809 0.030280522 0.367075064 5.49E-05 4.260563321 4.22485511 up KAAAGPLDMSLPS(ph)TPDIK ddPTM_HeLa_CUDC101_4h_R1 1 KAAAGPLDMSLPSTPDIK 18 1 K7ELQ4;P17544-4;P17544-2;P17544 K7ELQ4 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 KAAAGPLDMSLPS(0.5)T(0.5)PDIK 107.73 0.00032139 18684000 5083.5 4424.6 3566.8 3439.6 4266.4 4554.5 4193.5 8347.6 4669.9 4961.4 TRUE FALSE FALSE 4487.619836 4560.916682 3759.631997 3579.881755 3951.676172 4467.630501 4355.2447 9297.857042 4477.404745 4931.889372 0.909918998 0.924780817 0.762310691 0.725864164 0.801249962 0.905865919 0.883078344 1.885252555 0.907847765 1 12.26792472 -4.260535576 24.98591527 0.908467712 1.885252864 0.923813286 0.08689059 18.05360158 499016.6358 0.014917665 0.121225458 5.49E-05 4.260535576 0.976785152 S(ph)QEVTRDEESTR ddPTM_HeLa_CUDC101_4h_R1 1 SQEVTRDEESTR 12 1 C9J9Y9;A0A0U1RQD7;C9JYK5;F1LLU6;J3QTA2;Q99933-4;Q99933-3;Q99933-2;Q99933 C9J9Y9 BAG1 BAG family molecular chaperone regulator 1 1 0 S(0.996)QEVT(0.004)RDEESTR 112.02 0.026217 7922800 1318.8 1128.7 903.18 1004.3 1113.9 1277.2 1046.4 2968.3 1310.7 1198.2 TRUE FALSE FALSE 1164.212263 1163.473909 952.0086428 1045.259695 1031.729816 1252.839538 1086.759999 3306.199274 1256.672391 1191.073053 0.977448243 0.976828337 0.799286526 0.877578157 0.866218754 1.051857848 0.912420943 2.775815694 1.055075831 1 10.21804619 -4.260522748 24.99989964 0.960306813 2.775816264 0.97936859 0.079638136 7.288225528 198745.261 0.010948665 0.088928176 5.49E-05 4.260522748 1.815509451 TLQPSS(ph)QNTK ddPTM_HeLa_CUDC101_4h_R1 1 TLQPSSQNTK 10 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 T(0.001)LQPS(0.211)S(0.78)QNT(0.007)K 103.46 0.0017668 0 1956.6 2104.3 2278.7 2115 2722 2135.1 1879.9 6843.5 2032.8 2299 TRUE FALSE FALSE 1727.250314 2169.130989 2401.893415 2201.258842 2521.203483 2094.376525 1952.408373 7622.536378 1949.007124 2285.325446 0.755800587 0.949156276 1.051007164 0.963214603 1.1032142 0.916445633 0.854323999 3.33542708 0.852835699 1 11.15818391 -4.260519182 24.99996552 0.918325547 3.335427838 0.981718148 0.098095669 8.475382484 230223.3101 0.016826657 0.136984102 5.49E-05 4.260519182 2.417102291 HLS(ph)QEDNDLNK ddPTM_HeLa_CUDC101_4h_R1 2 HLSQEDNDLNK 11 0 F5H777;A0A2R8Y4L3;A0A2R8YE98;A0A2R8Y7C3;Q8N4S0-2;Q8N4S0 F5H777 CCDC82 Coiled-coil domain-containing protein 82 1 0 HLS(1)QEDNDLNK;HLS(1)QEDNDLNK ; 104.9 0.005813 12448000 7012.2 5913.3 6169.1 5823.4 6256.1 6771.2 6259.7 15852.7 7247.7 8053.6 TRUE FALSE FALSE 6190.240546 6095.481764 6502.620207 6060.903423 5794.599967 6642.050642 6501.138726 17657.30729 6948.946738 8005.696829 0.773229449 0.76139303 0.81224912 0.757073813 0.723809568 0.829665522 0.812064067 2.205592801 0.868000236 1 12.96681127 -4.260514549 24.99819102 0.848184763 2.205593227 0.964700097 0.079561977 13.95545916 377157.1703 0.015542572 0.126431487 5.49E-05 4.260514549 1.357408464 ANS(ph)PEKPPEAGAAHKPR ddPTM_HeLa_CUDC101_4h_R1 2 ANSPEKPPEAGAAHKPR 17 2 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 0 ANS(1)PEKPPEAGAAHKPR;ANS(1)PEKPPEAGAAHKPR ; 62.525 0.017975 235553000 10300.3 9564.8 10032.4 9358.3 9967.9 9527.4 9359 10050.3 9492.5 10458.5 TRUE FALSE FALSE 9092.914448 9859.480151 10574.78189 9739.971924 9232.587876 9345.680719 9719.979765 11194.38553 9101.215132 10396.29238 0.874630505 0.948365032 1.017168574 0.936869758 0.888065432 0.898943621 0.93494675 1.076767094 0.875428932 1 13.34378149 -4.260511915 23.57154232 0.938430648 1.076767186 0.456637315 0.047158528 29.97506812 761529.8004 0.007575948 0.061408538 5.49E-05 4.260511915 0.138336538 LSPVIS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 LSPVISPR 8 0 Q08499-6;Q08499-12;Q08499-7 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 LSPVIS(1)PR;LSPVIS(1)PR ; 109.83 0.011679 158537000 5908.4 5272.2 5136.9 5014.5 5131 5498.1 5102.2 8443.7 5294.9 5810.8 TRUE FALSE FALSE 5215.826309 5434.630233 5414.616352 5219.012985 4752.496352 5393.232903 5298.993563 9404.896677 5076.641981 5776.237103 0.902979953 0.940859964 0.937395099 0.90353164 0.822766841 0.93369313 0.917378125 1.628204748 0.878883933 1 12.49591425 -4.26050531 24.99437574 0.935979331 1.628204966 0.952350263 0.047638717 13.42721315 359237.86 0.007578317 0.061652335 5.49E-05 4.26050531 0.692225635 TSSVSNPQDSVGS(ph)PCSR ddPTM_HeLa_CUDC101_4h_R1 2 TSSVSNPQDSVGSPCSR 17 0 F5GZ78;A0A1B0GTU4;P49023;P49023-2;P49023-3;A0A1B0GU60;F5H836 F5GZ78 PXN Paxillin 1 0 TSSVSNPQDSVGS(0.999)PCS(0.001)R;TSSVSNPQDSVGS(0.97)PCS(0.03)R ; 289.81 6.21E-104 192951000 4657.4 4127.5 3907.7 4050.7 4119.1 3955 3804.8 2762.4 4069.3 3772.8 TRUE FALSE FALSE 4111.466632 4254.663383 4118.962082 4215.905055 3815.242199 3879.564964 3951.552411 3076.86045 3901.561732 3750.359218 1.096286087 1.13446823 1.098284682 1.124133666 1.017300471 1.034451566 1.053646379 0.820417531 1.040316808 1 11.87281307 -4.260474536 5.919779299 1.059040785 0.813548665 0.739487784 0.043632679 0.066577136 10.72968017 0.007442775 0.065317165 5.49E-05 4.260474536 -0.245492119 HSQPS(ph)PEPHSPTEPPAWGSSIVK ddPTM_HeLa_CUDC101_4h_R1 2 HSQPSPEPHSPTEPPAWGSSIVK 23 0 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7 Q5VZ89-5 DENND4C DENN domain-containing protein 4C 1 0 HS(0.028)QPS(0.971)PEPHS(0.002)PTEPPAWGSSIVK;HS(0.042)QPS(0.958)PEPHSPTEPPAWGSSIVK ; 138.12 1.36E-07 28444000 4325.5 3477.6 3140.5 2953.6 4841.3 3679.5 3143.1 1858.17 4246.8 4098.1 TRUE FALSE FALSE 3818.471447 3584.740734 3310.284929 3074.060575 4484.166944 3609.319668 3264.33042 2069.696562 4071.745106 4073.724319 0.937341643 0.879966452 0.812594243 0.754606923 1.100753658 0.885999981 0.801313531 0.508060045 0.999514152 1 11.99213264 -4.260468183 1.737621221 0.942462195 0.357881118 0.633144371 0.094630835 0.445814042 1.301877713 0.01413403 0.430622709 5.49E-05 4.260468183 -0.584581078 (ac)SANNS(ph)PPSAQK ddPTM_HeLa_CUDC101_4h_R1 1 SANNSPPSAQK 11 0 O94806;O94806-2 O94806 PRKD3 Serine/threonine-protein kinase D3 1 0 S(0.127)ANNS(0.86)PPS(0.013)AQK 62.924 0.034841 6405700 6094.2 5712.7 4958.2 5135.6 5152.3 5690 5278.3 6679.3 5466.8 5568.2 TRUE FALSE FALSE 5379.847114 5888.701516 5226.25529 5345.051966 4772.225094 5581.47273 5481.885799 7439.644513 5241.45619 5535.080099 0.9719547 1.063887317 0.944205901 0.965668404 0.862178145 1.008381565 0.990389606 1.344089766 0.946952184 1 12.43438848 -4.260439538 5.653830207 0.980312633 1.356376289 0.832952379 0.049818672 0.040894175 5.348768809 0.006571327 0.058968651 5.49E-05 4.260439538 0.376063656 S(ph)PSSKPSLAVAVDSAPEVAVK ddPTM_HeLa_CUDC101_4h_R1 2 SPSSKPSLAVAVDSAPEVAVK 21 1 Q5SRN1;O60508 Q5SRN1 CDC40 Pre-mRNA-processing factor 17 1 0 S(0.839)PS(0.068)S(0.068)KPS(0.024)LAVAVDSAPEVAVK;S(0.768)PS(0.097)S(0.097)KPS(0.039)LAVAVDSAPEVAVK ; 158.44 1.70E-07 129496000 7798 5990 5976.7 5485 5973.1 5294.4 4893.4 3335.4 6407.2 7857.2 TRUE FALSE FALSE 6883.930261 6174.5448 6299.818481 5708.702008 5532.476313 5193.418141 5082.140077 3715.088454 6143.092504 7810.465025 0.881372651 0.790547654 0.806586863 0.730904241 0.708341475 0.664930721 0.650683418 0.475655219 0.786520711 1 12.93119273 -3.867757795 0.180656065 1.055493216 1.01E-18 0.709826767 0.072351889 2.471289651 0.068938529 0.048813313 0.613019304 0.000135595 3.867757795 -1.055493216 down QGDETPSTNNGS(ph)DDEKTGLK ddPTM_HeLa_CUDC101_4h_R1 3 QGDETPSTNNGSDDEKTGLK 20 1 Q9Y3P9;Q9Y3P9-3;C9JGR5;B5MCD9;Q9Y3P9-4 Q9Y3P9 RABGAP1 Rab GTPase-activating protein 1 1 0 QGDET(0.012)PS(0.184)T(0.133)NNGS(0.659)DDEKT(0.011)GLK;QGDETPSTNNGS(0.985)DDEKT(0.014)GLK;QGDETPS(0.006)T(0.006)NNGS(0.985)DDEKT(0.003)GLK ;; 90.545 0.0010473 429392000 7040.5 6601.2 7048.1 5960.2 6435.8 6741.9 6192.1 6584.4 6666 6565.5 TRUE FALSE FALSE 6215.223263 6804.575148 7429.141605 6203.282718 5961.043856 6613.30949 6430.931371 7333.941481 6391.224659 6526.448114 0.952313288 1.042615375 1.138313134 0.950483726 0.913367233 1.013309135 0.985364667 1.123726314 0.979280697 1 12.67208233 -4.260439138 22.33632866 0.988834788 1.123726516 0.284865855 0.058790375 18.41688121 410960.3733 0.008377198 0.067820648 5.49E-05 4.260439138 0.134891728 DADS(ph)QNPDAPEGK ddPTM_HeLa_CUDC101_4h_R1 1 DADSQNPDAPEGK 13 0 A0A3B3ISK1;A0A3B3ITV3;A0A3B3ISC6;A0A3B3IT15;A0A3B3IS84;P53621;P53621-2;A0A3B3IU89 A0A3B3ISK1 COPA Coatomer subunit alpha;Xenin;Proxenin 1 0 DADS(1)QNPDAPEGK 175.27 2.56E-07 5203200 698.41 771 768.33 668.41 815.54 981.78 1102.9 8660.9 773.62 852.33 TRUE FALSE FALSE 616.5434385 794.7535961 809.8682439 695.6706489 755.379239 963.0541823 1145.439222 9646.821847 741.7310562 847.2603033 0.727690695 0.938027656 0.955867094 0.821082548 0.891555094 1.136668599 1.35193307 11.3859009 0.875446487 1 9.726661466 -4.260432577 5.054380893 0.901242862 11.8930249 0.998899382 0.103845138 0.005138095 0.415313457 0.020479002 0.196393537 5.49E-05 4.260432577 10.99178204 up ESEKQQDS(ph)QPEEVMDVLEMVENVK ddPTM_HeLa_CUDC101_4h_R1 1 ESEKQQDSQPEEVMDVLEMVENVK 24 1 Q9H307 Q9H307 PNN Pinin 1 0 ES(0.037)EKQQDS(0.963)QPEEVMDVLEMVENVK 49.793 0.024756 3954300 922.48 729.49 912.82 544.12 975.44 772.78 759.02 1138.7 792.29 682.1 TRUE FALSE FALSE 814.3482928 751.9647222 962.1698103 566.3115655 903.4837346 758.040509 788.2956557 1268.325005 759.6314709 678.0428389 1.201027791 1.109022438 1.419039853 0.835215023 1.332487688 1.117983209 1.1626045 1.870567658 1.120329612 1 9.405232616 -4.260426006 4.684629755 1.12109312 1.915808734 0.666180459 0.153754377 0.079993371 4.764060344 0.020455334 0.207571655 5.49E-05 4.260426006 0.794715614 KLVPIKPAPLPLS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 1 KLVPIKPAPLPLSPGK 16 2 A0A1B0GVH1;Q9BRW5;Q02086-2;Q02086 A0A1B0GVH1 SP2 Transcription factor Sp2 1 0 KLVPIKPAPLPLS(1)PGK 56.553 0.028594 14026000 4778.7 4701.3 4404.3 4081.9 4322.5 4110 3268.8 2035.6 4276.4 5185.7 TRUE FALSE FALSE 4218.54803 4846.141481 4642.40978 4248.377525 4003.637787 4031.608598 3394.878711 2267.324476 4100.124982 5154.855226 0.818364017 0.940112044 0.90058975 0.824150697 0.776673177 0.782099287 0.658578866 0.439842513 0.795390909 1 12.33171619 -3.867455386 0.500139814 0.921623321 4.80E-32 0.814227208 0.064054086 1.838985484 0.23441443 0.014424629 1.082601802 0.000135689 3.867455386 -0.921623321 down IGDSS(ph)QGDNNLQK ddPTM_HeLa_CUDC101_4h_R1 1 IGDSSQGDNNLQK 13 0 A0A0D9SG77;A0A1B0GVL3;Q05086-2;Q05086-3;Q05086 A0A0D9SG77 UBE3A Ubiquitin-protein ligase E3A 1 0 IGDS(0.23)S(0.77)QGDNNLQK 132.97 0.00099736 14806000 1866.1 1584.1 1731.8 1454.5 2003.9 2093.1 2351.6 13166 1760.5 2113.5 TRUE FALSE FALSE 1647.358587 1632.904243 1825.426346 1513.820797 1856.076289 2053.177605 2442.302 14664.76422 1687.931445 2100.928808 0.784109666 0.777229689 0.868866351 0.720548355 0.883455109 0.977271384 1.162486797 6.980133818 0.803421534 1 11.03681156 -4.260416597 4.94975359 0.88093124 7.294283399 0.997741378 0.087082241 0.006909177 0.512583376 0.015555087 0.151394114 5.49E-05 4.260416597 6.413352159 up RLS(ph)PGSDIYVTVSSMALAR ddPTM_HeLa_CUDC101_4h_R1 3 RLSPGSDIYVTVSSMALAR 19 1 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 RLS(0.836)PGS(0.164)DIYVTVSSMALAR;RLS(0.619)PGS(0.38)DIYVTVSSMALAR;RLS(0.996)PGS(0.004)DIYVTVSSMALAR ;; 133.17 2.28E-05 35808000 4025.6 4178.21 3876.68 3933.4 3960.29 4142.1 3837.05 4180.74 4258.04 4416.14 TRUE FALSE FALSE 3553.72527 4306.935698 4086.265047 4093.821054 3668.147297 4063.096344 3985.046304 4656.658542 4082.521789 4389.872603 0.80952811 0.981107218 0.930839096 0.932560332 0.835593109 0.925561334 0.907781766 1.060773048 0.929986393 1 12.09996336 -4.260394946 23.32566029 0.911958258 1.060773164 0.378573547 0.05492261 36.65242769 818248.3965 0.010075862 0.08233665 5.49E-05 4.260394946 0.148814906 QIANSQDGY(ph)VWQVTDMNR ddPTM_HeLa_CUDC101_4h_R1 1 QIANSQDGYVWQVTDMNR 18 0 P10155-3;P10155-5;P10155-4;P10155;D6RDN1;D6RE09;P10155-2 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 1 0 QIANS(0.071)QDGY(0.927)VWQVT(0.002)DMNR 99.669 0.013577 28065000 578.6 479.73 620.8 399.74 800.37 743.39 695.99 2955.4 718.9 746.95 TRUE FALSE FALSE 510.7773851 494.5099127 654.3623258 416.043125 741.3282997 729.2110743 722.8345674 3291.83079 689.2666377 742.5071082 0.687909085 0.666000241 0.881287625 0.560322077 0.998412394 0.982093055 0.973505249 4.433399699 0.928296349 1 9.536261027 -4.26039021 5.241004267 0.838927653 4.588967638 0.981969245 0.145647702 0.016001596 1.504956175 0.022969026 0.215246386 5.49E-05 4.26039021 3.750039985 up SWSTATS(ph)PLGGERPFR ddPTM_HeLa_CUDC101_4h_R1 2 SWSTATSPLGGERPFR 16 1 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0;H0Y8P3;Q9UPQ0-2;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46;D6RJ93;Q6NVB9 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 SWSTAT(0.039)S(0.961)PLGGERPFR;SWSTAT(0.004)S(0.996)PLGGERPFR ; 227.91 2.72E-32 180507000 10943.4 10108.3 9586.1 10167.5 12361.9 10231.9 9797.4 7553.4 10418.3 10202.7 TRUE FALSE FALSE 9660.631241 10419.72474 10104.35356 10582.1746 11449.98727 10036.74356 10175.289 8413.248524 9988.853264 10142.01389 0.952535793 1.02738222 0.996286702 1.043399735 1.128965844 0.989620372 1.003280918 0.829544173 0.984898401 1 13.30805653 -4.26038397 24.2756682 0.998301777 0.829544096 0.559832935 0.04725873 41.00141866 942876.3245 0.007366777 0.060673716 5.49E-05 4.26038397 -0.168757681 DQTASAPAT(ph)PLVNK ddPTM_HeLa_CUDC101_4h_R1 6 DQTASAPATPLVNK 14 0 A0A0B4J1Z0;A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2 A0A0B4J1Z0 COBLL1 Cordon-bleu protein-like 1 1 0 DQT(0.047)AS(0.233)APAT(0.72)PLVNK;DQTAS(0.11)APAT(0.89)PLVNK;DQT(0.352)AS(0.151)APAT(0.497)PLVNK;DQT(0.014)AS(0.056)APAT(0.93)PLVNK;DQT(0.001)AS(0.124)APAT(0.876)PLVNK;DQT(0.01)AS(0.037)APAT(0.953)PLVNK ;;;;; 215.15 1.84E-23 177751000 22892.3 19546.1 19735 19348.7 20779.8 20135.8 19265.6 24010.8 19667 20564.4 TRUE FALSE FALSE 20208.8993 20148.29217 20801.9338 20137.82362 19246.91555 19751.74316 20008.68065 26744.09242 18856.31794 20442.08203 0.988593005 0.985628183 1.017603479 0.985116075 0.941534014 0.966229523 0.978798569 1.308286131 0.922426488 1 14.31925452 -4.260374213 24.98816933 0.988591912 1.308286233 0.922854905 0.028602408 12.89838588 302547.5248 0.002936154 0.024045562 5.49E-05 4.260374213 0.319694321 ALTDDS(ph)DENEEEDAFTDQK ddPTM_HeLa_CUDC101_4h_R1 1 ALTDDSDENEEEDAFTDQK 19 0 A0A2R8Y549;Q8NI35-4;Q8NI35-3;Q8NI35-2;Q8NI35;Q8NI35-5;A0A0U1RRD7;A0A0U1RQW4 A0A2R8Y549 INADL InaD-like protein 1 0 ALT(0.004)DDS(0.996)DENEEEDAFTDQK 166.49 2.55E-06 7679800 5365.5 5258.6 4258.7 4321.6 5135.9 4617.8 4587.4 5237.1 5330.9 4946.8 TRUE FALSE FALSE 4736.564224 5420.611233 4488.938204 4497.853528 4757.034889 4529.723159 4764.337555 5833.270295 5111.158046 4917.376214 0.963229986 1.102338116 0.91287264 0.914685664 0.967392911 0.921166688 0.968877984 1.186256662 1.039407567 1 12.26367302 -4.260365733 24.66725362 0.975309961 1.186256741 0.555605927 0.056222281 40.12813676 921795.0636 0.007138033 0.058977193 5.49E-05 4.260365733 0.21094678 SSSPTSSLT(ph)QPIEMPT(ph)LSSSPTEERPTVGPGQQDNPLLK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPTSSLTQPIEMPTLSSSPTEERPTVGPGQQDNPLLK 39 1 Q7LBC6;Q7LBC6-2 Q7LBC6 KDM3B Lysine-specific demethylase 3B 2 0 S(0.125)S(0.125)S(0.125)PT(0.138)S(0.151)S(0.151)LT(0.183)QPIEMPT(0.24)LS(0.24)S(0.24)S(0.24)PT(0.04)EERPTVGPGQQDNPLLK 81.068 2.71E-11 10726000 1335.7 1120.7 1121.9 1001.6 1380.3 1253.8 1185.4 1640.6 1433.8 1401.8 TRUE FALSE FALSE 1179.131271 1155.227439 1182.553308 1042.449577 1278.478019 1229.885854 1231.121275 1827.359272 1374.698157 1393.462031 0.846188302 0.829034027 0.848644083 0.748100453 0.917483211 0.882611673 0.883498256 1.311380742 0.986534348 1 10.44445798 -4.260349155 24.81882956 0.896422963 1.311380887 0.762607415 0.07141203 36.86980104 839213.3542 0.011680297 0.095872821 5.49E-05 4.260349155 0.414957923 SMDAMSS(ph)PTKTETVK ddPTM_HeLa_CUDC101_4h_R1 1 SMDAMSSPTKTETVK 15 1 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;H0Y390;Q9UPN3-5;H3BPE1;H3BQK9 A0A590UJG2;H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 SMDAMS(0.14)S(0.779)PT(0.066)KT(0.014)ET(0.001)VK 90.367 0.0075531 9162100 4025 3336.4 4073.7 3375.2 3921.6 4232.6 3666.4 4454.3 3994.5 4185.6 TRUE FALSE FALSE 3553.195602 3439.190529 4293.936544 3512.855245 3632.311381 4151.870207 3807.814276 4961.359507 3829.845019 4160.703865 0.853989065 0.826588635 1.032021668 0.844293504 0.873004063 0.997876884 0.915185122 1.192432739 0.920480078 1 12.02261189 -4.260339926 24.54956584 0.923541623 1.192432846 0.592989296 0.068037115 44.07659784 984006.8705 0.010424638 0.085718714 5.49E-05 4.260339926 0.268891223 SNYNFEKPFLWLAR ddPTM_HeLa_CUDC101_4h_R1 2 SNYNFEKPFLWLAR 14 1 F5H018;B5MDF5;J3KQE5;P62826;B4DV51 F5H018 RAN GTP-binding nuclear protein Ran 0 0 ; ; 115.37 0.0028291 21986000 6466.8 5108.3 3005.3 4446.7 5087.3 4918.5 4072.5 3965.6 2591.6 2894.3 FALSE FALSE TRUE 5708.771507 5265.680668 3167.775609 4628.055646 4712.020014 4824.687807 4229.577689 4417.027874 2484.773151 2877.084575 1.984220956 1.83021407 1.101036666 1.608592145 1.637775982 1.676936385 1.470091539 1.535244363 0.863642721 1 11.49039192 -9.550802766 1.336246245 1.001972253 1.644120118 0.571184438 0.22809788 0.301199362 0.968241771 0.172735556 0.041423924 2.81E-10 9.550802766 0.642147864 S(ph)MDSSDLSDGAVTLQEYLELKK ddPTM_HeLa_CUDC101_4h_R1 4 SMDSSDLSDGAVTLQEYLELKK 22 1 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6;J3QLH1 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 S(0.713)MDS(0.232)S(0.055)DLSDGAVTLQEYLELKK;S(0.49)MDS(0.228)S(0.271)DLS(0.011)DGAVTLQEYLELKK;S(0.931)MDS(0.056)S(0.013)DLSDGAVTLQEYLELKK;S(0.917)MDS(0.063)S(0.019)DLSDGAVTLQEYLELKK ;;; 159.53 1.05E-07 161216000 7125.1 6200.5 6851.5 6598 6861.5 7145.2 6344 4409.66 6851.6 6558.2 TRUE FALSE FALSE 6289.906579 6391.530056 7221.912815 6867.094959 6355.340815 7008.917215 6588.690205 4911.63787 6569.174148 6519.191535 0.964829235 0.98041759 1.107792703 1.053366038 0.974866405 1.075120615 1.010660627 0.753412113 1.007666996 1 12.67047735 -4.26033465 24.94473287 1.002752694 0.753412031 0.738708703 0.046520087 40.36323677 911275.4307 0.007026669 0.058038378 5.49E-05 4.26033465 -0.249340663 KASSPSPLT(ph)IGTPESQR ddPTM_HeLa_CUDC101_4h_R1 1 KASSPSPLTIGTPESQR 17 1 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 1 0 KAS(0.001)S(0.002)PS(0.185)PLT(0.788)IGT(0.024)PESQR 99.846 0.032418 57952000 1433.1 913.87 1356.3 1194.5 1257.8 1204.2 1220.5 1825.5 1540.8 1433.3 TRUE FALSE FALSE 1265.11419 942.0252515 1429.625681 1243.216873 1165.0146 1181.231891 1267.575094 2033.307541 1477.287572 1424.774668 0.88793984 0.661174902 1.003404758 0.872570871 0.817683404 0.829065759 0.889667063 1.42710815 1.036856989 1 10.47651806 -4.260311119 24.83742873 0.906458613 1.427108334 0.699304568 0.105337723 38.50743023 847578.8462 0.014652084 0.120373482 5.49E-05 4.260311119 0.52064972 GPSPAPASS(ph)PKR ddPTM_HeLa_CUDC101_4h_R1 2 GPSPAPASSPKR 12 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 GPSPAPAS(0.19)S(0.81)PKR;GPSPAPAS(0.141)S(0.859)PKR ; 91.712 0.010271 39791000 5298.3 4915 4825 5267.3 5017.9 5506.8 5161 7568 7189.1 6585.1 TRUE FALSE FALSE 4677.241306 5066.425324 5085.854095 5482.123261 4647.739514 5401.766965 5360.061499 8429.510529 6892.762255 6545.931532 0.714526463 0.7739808 0.776948868 0.837485579 0.710019573 0.825209817 0.818838613 1.287748044 1.052984166 1 12.6763828 -4.260303029 24.74999715 0.833542841 1.28774821 0.622099181 0.105989195 46.808269 1019342.282 0.016064773 0.132585837 5.49E-05 4.260303029 0.454205368 EFTES(ph)QLQEGK ddPTM_HeLa_CUDC101_4h_R1 2 EFTESQLQEGK 11 0 Q01995;H0YCU9 Q01995 TAGLN Transgelin 1 0 EFT(0.002)ES(0.998)QLQEGK;EFTES(1)QLQEGK ; 127.02 0.00010568 5327800 4885.3 4474 3926.41 4017.8 4628.5 4397.1 4211.2 5872.7 4544.8 4746.7 TRUE FALSE FALSE 4312.65254 4611.838637 4138.683601 4181.66325 4287.064776 4313.232644 4373.627395 6541.22443 4357.46142 4718.466417 0.913994539 0.977402026 0.877124734 0.886233551 0.908571641 0.914117483 0.92691714 1.386303059 0.923491032 1 12.20410232 -4.260300714 24.91305259 0.941440844 1.386303209 0.926349211 0.038755872 21.97641076 480760.011 0.006743098 0.055647538 5.49E-05 4.260300714 0.444862365 QNS(ph)TSLTGKPGALPANLDDMK ddPTM_HeLa_CUDC101_4h_R1 1 QNSTSLTGKPGALPANLDDMK 21 1 A0A087WU73;W0Z7M9;B0QY83;A0A499FIJ6;Q969V6;E7ER32;A0A087X287;A0A494BZX7 A0A087WU73 MKL1;mkl1 MKL/myocardin-like protein 1 1 0 QNS(0.577)T(0.045)S(0.189)LT(0.189)GKPGALPANLDDMK 82.517 0.00070872 23359000 2918.8 1895.7 2087.4 1947.4 2001.7 2200.3 2507.7 4387.9 1848.7 2181.7 TRUE FALSE FALSE 2576.662689 1954.10427 2200.251158 2026.823389 1854.038579 2158.332943 2604.422829 4887.400799 1772.495804 2168.723151 1.188101251 0.90103906 1.014537589 0.934569905 0.854898689 0.995209067 1.200901474 2.253584463 0.817299249 1 11.08263018 -4.260300689 3.308593929 1.039830457 2.420608246 0.910980132 0.118647849 0.070161962 1.236016304 0.016787037 0.246287961 5.49E-05 4.260300689 1.380777789 up RKELS(ph)QNTDESGLNDEAIAK ddPTM_HeLa_CUDC101_4h_R1 1 RKELSQNTDESGLNDEAIAK 20 2 A0A1W2PP02;P35251-2;P35251 A0A1W2PP02;P35251-2 RFC1 Replication factor C subunit 1 1 0 RKELS(0.921)QNT(0.048)DES(0.032)GLNDEAIAK 81.878 0.0027048 17373000 573.16 674.61 609.57 728.48 680.67 732.69 1052.8 7096 458.27 874.43 TRUE FALSE FALSE 505.9750537 695.3939345 642.525198 758.1905632 630.4583302 718.715159 1093.406849 7903.779957 439.3799166 869.2288515 0.582096479 0.800012486 0.739189912 0.872256555 0.725307644 0.826842273 1.25790446 9.09286426 0.505482435 1 9.763592251 -4.2602929 4.676009854 0.800712457 9.596813091 0.996925416 0.13819074 0.00782775 0.462762413 0.022058508 0.224501965 5.49E-05 4.2602929 8.796100634 up SPALK(ac)SPLQSVVVR ddPTM_HeLa_CUDC101_4h_R1 2 SPALKSPLQSVVVR 14 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 1 ; SPALK(1)SPLQSVVVR;SPALK(1)SPLQSVVVR 172.33 2.81E-07 4231700 682.12 372.56 289.08 450.32 444.01 358.16 368.6 389.61 439.52 382.47 FALSE TRUE FALSE 602.1629276 384.038132 304.7085392 468.685996 411.2562669 351.3286947 382.8170255 433.9616275 421.4027996 380.1950514 1.583826316 1.010108181 0.801453196 1.232751437 1.081698106 0.924074875 1.006896392 1.141418401 1.108385809 1 8.570595944 (ac)S(ph)FIDPYQHIIVEHQYSHK ddPTM_HeLa_CUDC101_4h_R1 1 SFIDPYQHIIVEHQYSHK 18 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 S(0.995)FIDPY(0.005)QHIIVEHQYSHK 88.311 0.0042487 4377200 1238 988.28 1054.7 1132.8 1262.3 1218.1 1152.8 1452.7 1257.2 1315.5 TRUE FALSE FALSE 1092.883517 1018.727735 1111.720272 1179.00048 1169.182644 1194.866772 1197.263882 1618.069496 1205.377684 1307.675347 0.835745293 0.779037196 0.850150058 0.901600296 0.894092441 0.9137335 0.915566608 1.23736331 0.92177136 1 10.3527887 -4.260277353 5.101929402 0.901866579 1.253168924 0.768505087 0.056888269 0.083060069 6.977180726 0.010712203 0.102276707 5.49E-05 4.260277353 0.351302345 DITDPLSLNTCTDEGHVVLAS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 3 DITDPLSLNTCTDEGHVVLASPLK 24 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 0 DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNTCT(0.046)DEGHVVLAS(0.953)PLK;DITDPLSLNTCT(0.02)DEGHVVLAS(0.98)PLK ;; 147.52 8.38E-09 450045000 17616.4 14621.8 13573.4 13554.9 15678.1 15872.6 13795.8 9303.4 18612.5 12438.8 TRUE FALSE FALSE 15551.4323 15072.28033 14307.21906 14107.72741 14521.5578 15569.8566 14327.90863 10362.46145 17845.28487 12364.81346 1.257716693 1.218965443 1.157091379 1.140957561 1.17442595 1.259206752 1.15876464 0.838060475 1.443231224 1 13.59395285 -4.260277305 24.38932679 1.148629715 0.83806034 0.403237881 0.117836256 51.41089892 1078801.725 0.014496376 0.11942058 5.49E-05 4.260277305 -0.310569376 FIAHVPVPS(ph)QQEIEEALVR ddPTM_HeLa_CUDC101_4h_R1 1 FIAHVPVPSQQEIEEALVR 19 0 Q9ULR0;Q9ULR0-2;Q9ULR0-1 Q9ULR0 ISY1 Pre-mRNA-splicing factor ISY1 homolog 1 0 FIAHVPVPS(1)QQEIEEALVR 74.364 0.0016124 0 815.32 785.56 679.2 643.29 840.47 980.13 925.68 5533.9 875.32 727.87 TRUE FALSE FALSE 719.7494255 809.7621725 715.9196065 669.5261467 778.4702026 961.4356533 961.3837877 6163.856807 839.2389391 723.5405969 0.994760251 1.119166189 0.989467087 0.925347036 1.075917794 1.328792963 1.32872128 8.519019988 1.159905806 1 9.498930156 -4.260263647 5.142231795 1.032309237 8.863388833 0.997381427 0.114054845 0.006008742 0.521543045 0.017478091 0.166042774 5.49E-05 4.260263647 7.831079596 up RAQS(ph)TDSLGT(ph)SGSLQSK ddPTM_HeLa_CUDC101_4h_R1 1 RAQSTDSLGTSGSLQSK 17 1 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 2 0 RAQS(0.892)T(0.091)DS(0.073)LGT(0.91)S(0.034)GS(0.001)LQSK 109.28 0.0025008 9136600 2395 2057.2 2125.9 1901.8 2533.2 2385.7 2047.3 2840.6 2041.1 2176.8 TRUE FALSE FALSE 2114.261731 2120.579894 2240.832584 1979.363624 2346.330883 2340.196747 2126.265047 3163.962422 1956.964994 2163.852297 0.977082278 0.980002146 1.035575574 0.914740635 1.084330426 1.081495604 0.982629475 1.462189645 0.90438936 1 11.07938631 -4.2602365 24.99191374 0.998665779 1.462189795 0.857435111 0.057066754 22.71156465 471814.7042 0.006569678 0.054352528 5.49E-05 4.2602365 0.463524016 AQS(ph)SPAAPASLSAPEPASQAR ddPTM_HeLa_CUDC101_4h_R1 2 AQSSPAAPASLSAPEPASQAR 21 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;Q8WUI4-10;H0YI15 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 AQS(0.5)S(0.5)PAAPASLSAPEPASQAR;AQS(0.5)S(0.5)PAAPASLSAPEPASQAR ; 320.27 1.49E-169 309340000 5773.4 4621.9 4563.4 4467.9 4981.4 4503.5 4576.5 8397 5496.5 5051.6 TRUE FALSE FALSE 5096.650804 4764.295261 4810.111208 4650.120274 4613.932046 4417.603241 4753.017138 9352.880538 5269.931944 5021.552859 1.014955124 0.948769314 0.957893174 0.926032326 0.918825745 0.879728515 0.946523371 1.862547463 1.049462605 1 12.29391785 -4.260233745 24.99788046 0.977229304 1.862547748 0.967118189 0.049824319 14.16365058 293636.7291 0.00777767 0.06437446 5.49E-05 4.260233745 0.885318444 MEEESQS(ph)QGRDLTLEENQVK ddPTM_HeLa_CUDC101_4h_R1 1 MEEESQSQGRDLTLEENQVK 20 1 Q14683;G8JLG1 Q14683 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein 1 0 MEEES(0.311)QS(0.687)QGRDLT(0.002)LEENQVK 65.811 0.0080934 20464000 624.55 436.16 542.39 615.15 899.82 741.68 782.27 3631.4 713.39 760.44 TRUE FALSE FALSE 551.3411958 449.5975726 571.713244 640.2384759 833.4420713 727.5336897 812.4424159 4044.783897 683.9837623 755.9168691 0.729367498 0.594771186 0.756317616 0.846969425 1.102557841 0.962451983 1.074777465 5.350831636 0.904839924 1 9.562083775 -4.260225134 4.906157758 0.865185064 5.588585269 0.989569001 0.137679468 0.014114055 1.009907876 0.023032373 0.226106939 5.49E-05 4.260225134 4.723400205 up S(ph)QSMDIDGVSCEK ddPTM_HeLa_CUDC101_4h_R1 2 SQSMDIDGVSCEK 13 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 S(0.979)QS(0.021)MDIDGVSCEK;S(0.984)QS(0.016)MDIDGVSCEK ; 123.76 0.0018223 20512000 3045.7 2187.1 2406.62 2246.42 2384.5 2701.02 2264 5861.9 2110.04 2449.3 TRUE FALSE FALSE 2688.687663 2254.481959 2536.729157 2338.038717 2208.600186 2649.502544 2351.323238 6529.195001 2023.063258 2434.731455 1.104305634 0.925967402 1.041892794 0.960286077 0.907122706 1.088211408 0.965742334 2.681690003 0.830918438 1 11.24954694 -4.260207429 24.99942977 1.024477486 2.681690536 0.970061521 0.089358201 9.755645279 197943.6066 0.009776729 0.081246928 5.49E-05 4.260207429 1.65721305 (ac)SDVEENNFEGRES(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 SDVEENNFEGRESR 14 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 SDVEENNFEGRES(1)R;SDVEENNFEGRES(1)R ; 115.24 3.71E-05 21618200 160.68 74.327 219.521 75.488 266.384 73.997 151.52 0 226.07 173.54 TRUE FALSE FALSE 141.845334 76.61692677 231.3889693 78.56672693 246.733383 72.58563051 157.3641772 0 216.7512989 172.5077764 0.822254724 0.444136075 1.341324862 0.455438755 1.430273975 0.420767295 0.912214976 0 1.256472627 1 7.430517587 -4.260200753 24.22398842 0.881749907 4.20E-07 0.365371084 0.354500754 48.47193591 947790.8169 0.039888041 0.329871234 5.49E-05 4.260200753 -0.881749486 ASSDLSIASSEEDKLS(ph)QNACILESVSEK ddPTM_HeLa_CUDC101_4h_R1 2 ASSDLSIASSEEDKLSQNACILESVSEK 28 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 ASSDLS(0.003)IAS(0.072)S(0.072)EEDKLS(0.846)QNACILES(0.005)VS(0.001)EK;ASSDLS(0.001)IAS(0.054)S(0.054)EEDKLS(0.866)QNACILES(0.022)VS(0.002)EK ; 59.189 0.0010872 5766000 1263.44 1067.54 733.97 873.77 827.53 831.05 851.11 1576.4 824.61 775.51 TRUE FALSE FALSE 1115.341478 1100.429642 773.6506383 909.4061174 766.4847606 815.1991059 883.9375978 1755.851004 790.6192268 770.897232 1.446809551 1.42746607 1.00357169 1.179672309 0.994276187 1.057467937 1.146634806 2.277671953 1.02558317 1 9.590394738 -4.260197644 24.92674012 1.18553821 2.277672319 0.806411606 0.165663733 40.9538508 822011.2564 0.0280382 0.232469094 5.49E-05 4.260197644 1.092134109 SPDEEDYDYESYEK ddPTM_HeLa_CUDC101_4h_R1 4 SPDEEDYDYESYEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 0 0 ;;; ;;; 166.7 5.54E-05 124594300 8135.9 7495.1 7493 7104 7622.73 7025.75 6987.4 6690.5 7727.1 7413.68 FALSE FALSE TRUE 7182.222135 7726.015147 7898.094245 7393.731826 7060.416395 6891.745524 7256.906359 7452.119476 7408.585667 7369.583102 0.97457645 1.048365293 1.071715202 1.00327681 0.958048277 0.93516084 0.984710568 1.011199599 1.005292371 1 12.84736729 -4.242210066 20.91224581 0.992712893 1.011199748 0 0.038168493 1859.446291 2021858.889 0.005641971 0.19669386 5.73E-05 4.242210066 0.018486855 S(ph)QAFIEMETR ddPTM_HeLa_CUDC101_4h_R1 2 SQAFIEMETR 10 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2;H0Y8T4 D6REM6 MATR3 Matrin-3 1 0 S(1)QAFIEMETR;S(1)QAFIEMETR ; 143.94 0.00089365 8309500 910.78 812.88 460.77 676.74 826.16 755.75 713.3 1109.32 685.83 657.92 TRUE FALSE FALSE 804.0197491 837.9238693 485.68062 704.3403823 765.2158227 741.3353279 740.8122199 1235.600505 657.5597971 654.0066626 1.229375471 1.281216106 0.742623352 1.07696209 1.170042855 1.133528709 1.132728858 1.889278161 1.005432872 1 9.353161523 -4.260188453 5.113427845 1.10114327 1.926199116 0.740540263 0.142543465 0.067394639 5.713485784 0.020460399 0.195269694 5.49E-05 4.260188453 0.825055846 DGTAPPPQSPGSPGTGQDEEWS(ph)DEESPRK ddPTM_HeLa_CUDC101_4h_R1 3 DGTAPPPQSPGSPGTGQDEEWSDEESPRK 29 1 A0A0C4DGG1;Q9UKS6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 DGTAPPPQS(0.001)PGS(0.004)PGT(0.059)GQDEEWS(0.932)DEES(0.003)PRK;DGTAPPPQS(0.003)PGS(0.036)PGT(0.162)GQDEEWS(0.779)DEES(0.021)PRK;DGTAPPPQSPGSPGT(0.015)GQDEEWS(0.98)DEES(0.005)PRK ;; 86.793 3.74E-07 380488000 7105.5 6085.9 6318.9 5510.4 6833.4 6654.6 6149 6479.2 7124.7 6708.2 TRUE FALSE FALSE 6272.604061 6273.399365 6660.518848 5735.13793 6329.313696 6527.674592 6386.16899 7216.765938 6831.01685 6668.299328 0.940660242 0.940779509 0.998833214 0.860060061 0.949164605 0.978911454 0.957690811 1.082249849 1.024401652 1 12.70310315 -4.260184536 24.39478268 0.961932535 1.082249899 0.416734483 0.042965615 56.20611001 1092487.82 0.005638341 0.04674361 5.49E-05 4.260184536 0.120317364 SPEAKPLPGK(ac)LPK ddPTM_HeLa_CUDC101_4h_R1 1 SPEAKPLPGKLPK 13 2 P46087;P46087-4;P46087-2;F5GWB7;F5H709;F5H359;F5H5X6;P46087-3 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 0 1 SPEAKPLPGK(1)LPK 99.844 0.020793 4114100 1972.7 2433.3 2704.7 2951 2855.8 3165.3 2838.9 3063.2 1405.5 1857.2 FALSE TRUE FALSE 1741.463096 2508.267089 2850.924263 3071.354535 2645.133324 3104.927176 2948.397324 3411.902306 1347.564695 1846.153292 0.943292794 1.358645081 1.544251106 1.663650873 1.43278098 1.681836059 1.59704903 1.848114304 0.729931096 1 10.85030663 -7.02080245 2.177757496 0.97084001 1.627734716 0.869833044 0.126312775 0.062030602 0.582616254 0.016978006 0.022002506 9.53E-08 7.02080245 0.656894706 HS(ph)LEEGLDMVNR ddPTM_HeLa_CUDC101_4h_R1 3 HSLEEGLDMVNR 12 0 Q7Z309-2;Q7Z309;Q7Z309-5 Q7Z309-2 FAM122B Protein FAM122B 1 0 HS(1)LEEGLDMVNR;HS(1)LEEGLDMVNR;HS(1)LEEGLDMVNR ;; 191.01 1.98E-11 53446400 8097 6730.4 7085.7 7405.7 8118.2 7824.2 7537.9 9428.4 8806.1 8412.5 TRUE FALSE FALSE 7147.881934 6937.755647 7468.774375 7707.736456 7519.33656 7674.966421 7828.639328 10501.69095 8443.108831 8362.462076 0.854758069 0.829630746 0.893131031 0.921706596 0.899177358 0.91778789 0.936164404 1.255813282 1.009643901 1 13.02971205 -4.260142518 4.591890807 0.916566532 1.277534867 0.787068396 0.052805493 0.077063313 4.244758256 0.008639743 0.089399268 5.49E-05 4.260142518 0.360968336 TVFPGAVPVLPAS(ph)PPPKDSLR ddPTM_HeLa_CUDC101_4h_R1 2 TVFPGAVPVLPASPPPKDSLR 21 1 Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R165;Q9UBC2-4;M0R2S2 Q9UBC2-3 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 0 TVFPGAVPVLPAS(1)PPPKDSLR;TVFPGAVPVLPAS(1)PPPKDSLR ; 150.26 3.23E-07 775240000 7340.6 6804.9 7037.1 7341.1 7617.7 5905 6551 6730.3 7225.7 7036.9 TRUE FALSE FALSE 6480.145996 7014.550903 7417.546912 7640.501789 7055.757448 5792.371963 6803.674264 7496.450147 6927.853588 6995.044206 0.926391 1.002788645 1.060400291 1.092273553 1.008679465 0.828067957 0.972642068 1.071680168 0.99039454 1 12.77211746 -4.260123198 23.34437 0.976030063 1.071680232 0.102356053 0.068965271 73.92016187 1310676.69 0.01018308 0.083575551 5.49E-05 4.260123198 0.095650169 S(ph)PLSALAR ddPTM_HeLa_CUDC101_4h_R1 2 SPLSALAR 8 0 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 S(1)PLSALAR;S(1)PLSALAR ; 103.88 0.015292 31155000 2444.14 1997.34 1748.4 1626.17 2186 2183.85 1831.82 1076.73 1982.98 1537.55 TRUE FALSE FALSE 2157.641614 2058.875678 1842.923793 1692.492242 2024.743135 2142.1967 1902.473911 1199.300591 1901.240725 1528.404584 1.41169533 1.347075048 1.205782691 1.107358784 1.324742909 1.401590078 1.244744965 0.784674819 1.24393812 1 10.57781077 -4.260108074 24.36596844 1.228182486 0.784674619 0.553839054 0.124457398 67.47997859 1234837.464 0.023731082 0.198147346 5.49E-05 4.260108074 -0.443507867 RPPES(ph)PPIVEEWNSR ddPTM_HeLa_CUDC101_4h_R1 3 RPPESPPIVEEWNSR 15 1 A0A3B3IU46;Q9BTL3 A0A3B3IU46 FAM103A1 RNMT-activating mini protein 1 0 RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR;RPPES(1)PPIVEEWNSR ;; 88.282 0.0068455 160950000 2803.43 2394.87 2493.16 2390.67 2536.05 2657.65 2420.64 2565.61 2125.84 2612.91 TRUE FALSE FALSE 2474.816185 2468.653106 2627.947771 2488.171856 2348.970644 2606.959754 2514.004896 2857.668672 2038.211975 2597.368295 0.952816815 0.950443998 1.011773254 0.957958816 0.904365641 1.003692761 0.967904667 1.100216969 0.784721974 1 11.34283488 -4.260086062 24.60874381 0.972789241 1.10021702 0.2569212 0.066639553 49.37649927 897738.4298 0.004344696 0.035970841 5.49E-05 4.260086062 0.127427778 DSAIPVES(ph)DT(ph)DDEGAPR ddPTM_HeLa_CUDC101_4h_R1 2 DSAIPVESDTDDEGAPR 17 0 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 2 0 DSAIPVES(1)DT(1)DDEGAPR;DSAIPVES(1)DT(1)DDEGAPR ; 156.29 0.00023985 49082000 7733.2 5529.4 5523.7 5569.7 7053.1 6810 6185.8 10144.3 6534.3 6998 TRUE FALSE FALSE 6826.726019 5699.75426 5822.32793 5796.85644 6532.806865 6680.110596 6424.388378 11299.08611 6264.953388 6956.375585 0.981362483 0.819356889 0.836977225 0.833315621 0.939110717 0.960286074 0.923525232 1.624277753 0.900605971 1 12.76412011 -4.260079623 24.95085905 0.94985477 1.624277979 0.898537834 0.070853818 30.88955363 566744.7506 0.011649796 0.097665804 5.49E-05 4.260079623 0.674423209 ES(ph)SPLSSR ddPTM_HeLa_CUDC101_4h_R1 1 ESSPLSSR 8 0 A0A0A0MS66;Q14693-6;Q14693;Q14693-2;Q14693-4;Q14693-3;Q14693-5;Q14693-7 A0A0A0MS66 LPIN1 Phosphatidate phosphatase LPIN1 1 0 ES(0.645)S(0.355)PLSSR 119.62 0.0075337 10571000 3929.6 3610.5 3771.6 3966.8 3686 3541.3 3427.2 2243.9 4016.2 3561.8 TRUE FALSE FALSE 3468.978245 3721.735226 3975.504104 4128.58325 3414.091124 3473.755603 3559.388252 2499.336506 3850.650536 3540.614255 0.97976735 1.05115524 1.122828927 1.166064121 0.964265203 0.981116652 1.005302469 0.705904774 1.087565676 1 11.78978396 -4.260071049 5.597426541 1.013584948 0.695095123 0.667712296 0.068473848 0.073566758 9.190771472 0.009816325 0.08898099 5.49E-05 4.260071049 -0.318489824 AATEALGEKSPDSATVSGY(ph)DIMK ddPTM_HeLa_CUDC101_4h_R1 1 AATEALGEKSPDSATVSGYDIMK 23 1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;H0Y2S9;H7C3G6;H0Y7E2;K7EL39;J3QRL2 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 AAT(0.001)EALGEKS(0.04)PDS(0.116)AT(0.162)VS(0.162)GY(0.518)DIMK 63.869 0.0049244 48131000 3658.2 3189.5 3149.3 3157.2 3549.9 3089.8 3101.5 3712.6 3522.1 3322.5 TRUE FALSE FALSE 3229.391341 3287.764715 3319.560684 3285.964263 3288.030949 3030.867213 3221.125894 4135.227377 3376.917547 3302.737622 0.977792277 0.995466516 1.005093672 0.994921377 0.995547126 0.917683316 0.975289672 1.252060518 1.022460133 1 11.68944665 -4.260037281 24.99110309 0.986016299 1.252060605 0.900229404 0.026455963 24.20553372 431396.1687 0.003409993 0.028445742 5.49E-05 4.260037281 0.266044306 SNS(ph)LPHPAGGGK ddPTM_HeLa_CUDC101_4h_R1 1 SNSLPHPAGGGK 12 0 G5E9A7;Q09019 G5E9A7 DMWD Dystrophia myotonica WD repeat-containing protein 1 0 S(0.011)NS(0.989)LPHPAGGGK 102.5 0.0095436 15255000 2136.3 1626 1580.5 1812.4 1755.9 1874.2 1807.8 1991 1670.2 1925.4 TRUE FALSE FALSE 1885.886152 1676.095133 1665.946611 1886.317506 1626.370755 1838.452758 1877.527452 2217.647392 1601.353649 1913.947635 0.985338427 0.875726745 0.870424342 0.985563801 0.849746736 0.960555411 0.98097117 1.15867715 0.83667579 1 10.90233564 -4.260025108 3.914546254 0.963422778 1.17743378 0.435282401 0.069025893 0.17473854 5.36417982 0.008826232 0.106589777 5.50E-05 4.260025108 0.214011001 SLS(ph)EQPVMDTATATEQAK ddPTM_HeLa_CUDC101_4h_R1 4 SLSEQPVMDTATATEQAK 18 0 P18615;P18615-3;A0A0A0MT02;A2ABK4;A0A0G2JI50;E9PD43;A0A0A0MSN9;P18615-4 P18615 NELFE Negative elongation factor E 1 0 S(0.432)LS(0.568)EQPVMDTATATEQAK;S(0.118)LS(0.693)EQPVMDT(0.179)AT(0.008)ATEQAK;S(0.425)LS(0.57)EQPVMDT(0.004)ATATEQAK;S(0.039)LS(0.961)EQPVMDTATATEQAK ;;; 181.86 4.98E-11 193386500 6691.7 4514.33 5445.93 5582.48 5762.6 6195.8 7593.6 21400.1 5669.1 7952.6 TRUE FALSE FALSE 5907.30907 4653.411157 5740.353449 5810.157664 5337.504479 6077.625438 7886.487696 23836.20088 5435.417298 7905.297582 0.747259545 0.588644654 0.726140084 0.734970139 0.675180716 0.768804131 0.997620597 3.015218673 0.687566438 1 12.94860406 -4.260022161 4.052760697 0.816529602 3.209777348 0.969245209 0.120172565 0.035294243 1.223953874 0.021201291 0.24684845 5.50E-05 4.260022161 2.393247746 up SQSLPHS(ph)ATVTLGGTSDPSTLSSSALSER ddPTM_HeLa_CUDC101_4h_R1 1 SQSLPHSATVTLGGTSDPSTLSSSALSER 29 0 F8WDP1;A0A0A0MRY0;Q8WUA7-3;Q8WUA7-4;Q8WUA7 F8WDP1 TBC1D22A TBC1 domain family member 22A 1 0 S(0.003)QS(0.011)LPHS(0.554)AT(0.177)VT(0.255)LGGTSDPSTLSSSALSER 103.59 1.60E-09 15706000 1762.5 1303 1189.9 1126 1537.4 1604.5 1341.3 2296.2 1885 1433.6 TRUE FALSE FALSE 1555.902422 1343.143886 1254.229593 1171.923147 1423.989065 1573.896836 1393.03439 2557.590126 1807.299502 1425.072883 1.091805507 0.942508907 0.880116103 0.822360148 0.999239465 1.10443252 0.977517997 1.794708296 1.268215488 1 10.47681999 -4.26001565 24.99370324 1.009661355 1.794708553 0.798283748 0.118400932 33.38971966 586098.6705 0.013578379 0.114288941 5.50E-05 4.26001565 0.785047198 SPAGS(ph)PELR ddPTM_HeLa_CUDC101_4h_R1 1 SPAGSPELR 9 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 S(0.248)PAGS(0.752)PELR 84.31 0.036695 13904000 2336.3 1839.2 1580.8 1728.8 1998 1926.2 1787.5 2663.3 1677.4 1848.4 TRUE FALSE FALSE 2062.442456 1895.863572 1666.26283 1799.307937 1850.611521 1889.460944 1856.444474 2966.479307 1608.256862 1837.405635 1.122475308 1.031815477 0.906856275 0.979265494 1.007187246 1.028330875 1.010361805 1.61449342 0.87528678 1 10.84345444 -4.26000345 24.81721955 1.034157702 1.614493631 0.858156414 0.073999069 29.07156811 502387.4521 0.00958523 0.080580367 5.50E-05 4.26000345 0.580335929 GESSSPSPS(ph)AEK ddPTM_HeLa_CUDC101_4h_R1 1 GESSSPSPSAEK 12 0 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 GESS(0.001)S(0.005)PS(0.204)PS(0.79)AEK 190.1 4.32E-11 19879000 3874.1 2924.8 4082.2 4479.8 3925.3 3745.9 3618.3 2531.5 3059.5 3885.5 TRUE FALSE FALSE 3419.983871 3014.909621 4302.89608 4662.505607 3635.738439 3674.453199 3757.859043 2819.675727 2933.386115 3862.388873 0.885458193 0.780581583 1.114050455 1.207155924 0.941318588 0.951342115 0.972936482 0.730034137 0.759474566 1 11.91527771 -4.260000484 23.27422842 0.963914197 0.730033948 0.217275858 0.128577368 51.31046217 829703.4088 0.016252656 0.135642361 5.50E-05 4.260000484 -0.233880249 ALPSLNTGSSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 ALPSLNTGSSSPR 13 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 0 ALPSLNTGS(0.001)S(0.032)S(0.967)PR 163.62 3.49E-05 447400000 3292.6 2854.2 2711.8 2956.7 3293.7 2875.9 2793.2 1977.9 2839.7 2772.6 TRUE FALSE FALSE 2906.646419 2942.134519 2858.408111 3077.287006 3050.730313 2821.046999 2900.93466 2203.056141 2722.646364 2756.108452 1.054619755 1.067495917 1.037117429 1.116533351 1.106897775 1.023561681 1.052547354 0.799335795 0.987858936 1 11.42841694 -4.259993476 24.95525551 1.042453706 0.799335714 0.780931458 0.03960572 46.29422015 798921.7853 0.005890086 0.049419436 5.50E-05 4.259993476 -0.243117993 TAQALSSGSGS(ph)QETKIPISLVLR ddPTM_HeLa_CUDC101_4h_R1 1 TAQALSSGSGSQETKIPISLVLR 23 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 TAQALS(0.007)S(0.107)GS(0.078)GS(0.643)QET(0.164)KIPISLVLR 95.652 7.52E-05 41844000 947.85 921.56 931.74 774.82 1217.8 872.22 1112.2 3975 919.29 915.04 TRUE FALSE FALSE 836.7444598 949.9521713 982.1126828 806.4205087 1127.96532 855.5838567 1155.097927 4427.497932 881.3964771 909.5973014 0.919906489 1.044365644 1.079722512 0.886568713 1.240071094 0.940618288 1.269900345 4.867536355 0.968996363 1 9.829084164 -4.259967087 4.255318131 0.991307278 5.1716559 0.993080669 0.096080393 0.011626426 0.480777735 0.013269725 0.147272478 5.50E-05 4.259967087 4.180348621 up FLMPEAYPS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 FLMPEAYPSSPR 12 0 O43166-3;O43166-2;O43166 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 FLMPEAYPS(0.5)S(0.5)PR 112.84 0.0050387 19609000 2536.8 2070 1938.9 2330.1 2701.5 2132.9 2188 2218.1 2343.1 2375.7 TRUE FALSE FALSE 2239.44015 2133.774246 2043.722799 2425.13155 2502.215727 2092.218486 2272.391893 2470.599538 2246.516426 2361.569231 0.948284776 0.90354084 0.865408802 1.026915289 1.059556372 0.885944168 0.962238101 1.046168584 0.951281206 1 11.20553011 -4.259964321 22.68464615 0.965355034 1.046168666 0.159212633 0.058719113 55.85141595 858568.4714 0.008293677 0.069117489 5.50E-05 4.259964321 0.080813631 IMS(ph)QSQVSK ddPTM_HeLa_CUDC101_4h_R1 2 IMSQSQVSK 9 0 F8W7U8;P49959;P49959-3;P49959-2 F8W7U8 MRE11A Double-strand break repair protein MRE11A 1 0 IMS(0.994)QS(0.006)QVSK;IMS(0.824)QS(0.141)QVS(0.035)K ; 88.338 0.031017 9822100 1237.18 1115.59 1053.77 1095.43 1731.18 1851.04 1687.81 10761.8 1599.59 1455.14 TRUE FALSE FALSE 1092.159636 1149.960006 1110.739994 1140.10637 1603.4743 1815.734496 1752.909397 11986.87981 1533.654223 1446.484763 0.755043996 0.795003194 0.767889177 0.788191068 1.108531761 1.255273849 1.2118409 8.286903617 1.060262965 1 10.49833541 -4.259946076 5.029573515 0.905647977 8.651665199 0.994534927 0.162779541 0.00941186 0.74484084 0.026084532 0.252458428 5.50E-05 4.259946076 7.746017222 up S(ph)LHLDK ddPTM_HeLa_CUDC101_4h_R1 3 SLHLDK 6 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 S(1)LHLDK;S(1)LHLDK;S(1)LHLDK ;; 84.476 0.031103 27672400 22536.9 19199.5 21674.4 21062.3 23516 21559.3 20352.3 12012 23585.8 23137.3 TRUE FALSE FALSE 19895.15875 19791.01384 22846.18363 21921.31163 21781.27153 21148.09227 21137.29503 13379.39753 22613.58334 22999.67831 0.865019001 0.860490898 0.993326225 0.953113837 0.947025051 0.919495133 0.919025681 0.581721072 0.983213027 1 14.48932606 -4.259943797 4.970936082 0.934304874 0.563675712 0.843643599 0.046019137 0.06067445 4.576678247 0.007902662 0.077110871 5.50E-05 4.259943797 -0.370629162 AAAGPLDMSLPST(ph)PDIK ddPTM_HeLa_CUDC101_4h_R1 3 AAAGPLDMSLPSTPDIK 17 0 K7ELQ4;P17544-4;P17544-2;P17544 K7ELQ4 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 AAAGPLDMS(0.023)LPS(0.201)T(0.776)PDIK;AAAGPLDMSLPS(0.023)T(0.977)PDIK;AAAGPLDMSLPS(0.023)T(0.977)PDIK ;; 202.25 3.71E-16 51632000 7127.4 6026.6 4989.1 5124.1 6021.5 5473.7 5746.7 12195 6375.9 7164.7 TRUE FALSE FALSE 6291.936976 6212.272403 5258.825837 5333.082946 5577.305942 5369.298292 5968.352144 13583.22951 6113.082703 7122.084046 0.883440428 0.872254857 0.738383007 0.748809325 0.78310027 0.753894262 0.838006419 1.90719871 0.858327796 1 12.79808375 -4.259898769 24.99244621 0.88336189 1.907199049 0.925161818 0.090746459 33.72643238 547072.1726 0.016517897 0.1396239 5.50E-05 4.259898769 1.023837159 ALSSGGSITS(ph)PPLS(ph)PALPK ddPTM_HeLa_CUDC101_4h_R1 3 ALSSGGSITSPPLSPALPK 19 0 I1E4Y6;Q6Y7W6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;E7ESB6;C9JW88;F8WCD5;C9JPV7;C9JXQ0;C9J0V6;C9JHT0;C9JRZ2 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 2 0 ALSS(0.001)GGS(0.052)IT(0.054)S(0.892)PPLS(1)PALPK;ALS(0.004)S(0.032)GGS(0.03)IT(0.394)S(0.54)PPLS(1)PALPK;ALS(0.002)S(0.018)GGS(0.034)IT(0.416)S(0.531)PPLS(0.999)PALPK ;; 189.81 9.18E-11 114094000 9554.9 8386 7941.7 8097.2 9979.9 8178.6 8357.2 5579.2 8895.3 8763.6 TRUE FALSE FALSE 8434.889106 8644.36272 8371.052324 8427.438815 9243.70266 8022.606831 8679.540003 6214.313576 8528.631969 8711.473717 0.968250537 0.992296252 0.96092264 0.96739531 1.061095167 0.920924185 0.996334293 0.71334814 0.979011387 1 13.08870108 -4.259826311 24.97228499 0.983800781 0.713348049 0.850696139 0.033877521 34.28445114 530716.3454 0.004281195 0.036302075 5.50E-05 4.259826311 -0.270452732 SPGVVISDDEPGYDLDLFCIPNHYAEDLER ddPTM_HeLa_CUDC101_4h_R1 3 SPGVVISDDEPGYDLDLFCIPNHYAEDLER 30 0 P00492 P00492 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase 0 0 ;; ;; 133.91 1.51E-16 135541600 4749.94 3946.47 4112.63 3379.91 4104.52 3724.93 4182.44 3798.68 4218.07 1798.79 FALSE FALSE TRUE 4193.159234 4068.056063 4334.971218 3517.757339 3801.737737 3653.883166 4343.758112 4231.106376 4044.199369 1788.090717 2.345048377 2.27508371 2.424357543 1.967325989 2.126143657 2.04345514 2.429271664 2.366270534 2.261741717 1 10.80420422 -9.222381401 0.77623467 0.927780976 2.249421962 0 0.415056602 0.18016912 0.179031622 0.149260278 0.033866412 5.99E-10 9.222381401 1.321640986 LGAQT(ph)PVGVSTLEPGQTLLPR ddPTM_HeLa_CUDC101_4h_R1 1 LGAQTPVGVSTLEPGQTLLPR 21 0 O94887-3;O94887-2;O94887;C9JWM9;C9JVQ5 O94887-3 FARP2 "FERM, RhoGEF and pleckstrin domain-containing protein 2" 1 0 LGAQT(0.579)PVGVS(0.179)T(0.238)LEPGQT(0.004)LLPR 86.439 0.0046834 11565000 2262 1737.8 1600.3 1600.1 1704.8 1652.7 1142.4 568.99 1428.1 1909.7 TRUE FALSE FALSE 1996.851789 1791.339558 1686.817059 1665.358994 1579.0403 1621.177501 1186.462751 633.7615217 1369.233114 1898.341019 1.051893084 0.943634226 0.888574308 0.877270721 0.831800127 0.853996982 0.624999796 0.333850196 0.72127879 1 10.89052347 -4.259822571 0.596250448 1.013544503 2.67E-22 0.695420935 0.109591059 0.713146598 0.170875381 0.01200138 0.495981838 5.50E-05 4.259822571 -1.013544503 ALEVAGPDGQASAISPAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 ALEVAGPDGQASAISPASPR 20 0 K7EIN8;Q0VDD7-2;Q0VDD7 K7EIN8 C19orf57 Uncharacterized protein C19orf57 1 0 ALEVAGPDGQAS(0.16)AIS(0.201)PAS(0.639)PR;ALEVAGPDGQAS(0.001)AIS(0.006)PAS(0.993)PR ; 175.93 3.79E-08 23983000 3414.5 3371.7 2956.3 3403.1 3929.3 3120 3029.8 3842.3 3559.8 3217.2 TRUE FALSE FALSE 3014.257486 3475.578081 3116.12652 3541.893127 3639.443367 3060.491198 3146.660401 4279.691901 3413.063537 3198.063951 0.942525707 1.086775666 0.974379052 1.107511664 1.138014568 0.956982488 0.983926666 1.338213358 1.067228045 1 11.64298307 -4.259821026 24.74703934 0.999531605 1.338213489 0.616371455 0.069977172 56.74791862 867668.8732 0.010001545 0.084966341 5.50E-05 4.259821026 0.338681884 GPGGS(ph)QGSQGPSPQGAR ddPTM_HeLa_CUDC101_4h_R1 1 GPGGSQGSQGPSPQGAR 17 0 Q96MG7 Q96MG7 NDNL2 Melanoma-associated antigen G1 1 0 GPGGS(0.999)QGS(0.001)QGPSPQGAR 157.73 5.72E-05 3284200 112.04 131.12 57.222 121.9 112.46 173.26 174.19 1319.8 105.38 134.82 TRUE FALSE FALSE 98.90684104 135.1596518 60.31559441 126.8716089 104.1640499 169.9553542 180.9085666 1470.040697 101.0361918 134.0180846 0.738011152 1.008518008 0.450055637 0.946675288 0.777238759 1.268152389 1.34988175 10.96897259 0.753899685 1 7.066283883 -4.259815479 4.86625501 0.883388262 11.51938803 0.995405913 0.205005908 0.008308184 0.574856475 0.030002771 0.297712104 5.50E-05 4.259815479 10.63599976 SPLAQMEEERR ddPTM_HeLa_CUDC101_4h_R1 1 SPLAQMEEERR 11 1 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;A0A0U1RRM2 G3V1Q4 7-Sep Septin-7 0 0 78.513 0.033097 24618000 1654.4 1653.1 1473.6 1065.6 1765.7 1658.6 1457.7 1828.6 1829.6 1521.1 FALSE FALSE TRUE 1460.47374 1704.030052 1553.267273 1109.059774 1635.447829 1626.964968 1513.923977 2036.760433 1754.183114 1512.05243 0.965888293 1.126964924 1.027257549 0.733479708 1.081607884 1.075997721 1.001237753 1.347017069 1.160133789 1 10.56229245 -1.740588127 1.215045438 0.987805083 199.9664622 0.393993609 0.115612701 511.1556732 1.736200308 0.014370327 282332.7124 0.018172383 1.740588127 198.9786571 VSLLGPVT(ph)TPEHQLLK ddPTM_HeLa_CUDC101_4h_R1 3 VSLLGPVTTPEHQLLK 16 0 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 VSLLGPVT(0.936)T(0.064)PEHQLLK;VSLLGPVT(0.916)T(0.084)PEHQLLK;VSLLGPVT(0.657)T(0.343)PEHQLLK ;; 184.99 4.34E-10 107346000 6029.9 5471.1 4913.28 4913.93 4936.6 4778.72 4295.17 1934.86 6069.2 6265.03 TRUE FALSE FALSE 5323.084263 5639.658106 5178.906779 5114.341305 4572.436853 4687.573878 4460.836146 2155.116641 5819.025007 6227.765323 0.85473424 0.905566895 0.831583483 0.821216125 0.734201855 0.75268955 0.716281991 0.346049751 0.934368061 1 12.60449887 -3.859145343 0.368382206 0.948117503 3.11E-32 0.831708723 0.070127391 2.437005114 0.183590104 0.022190858 1.085332826 0.00013831 3.859145343 -0.948117503 down TGSNIS(ph)GASSDISLDEQYK ddPTM_HeLa_CUDC101_4h_R1 3 TGSNISGASSDISLDEQYK 19 0 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 TGS(0.001)NIS(0.466)GAS(0.463)S(0.05)DIS(0.019)LDEQYK;T(0.116)GS(0.025)NIS(0.852)GAS(0.005)S(0.002)DISLDEQYK;T(0.277)GS(0.039)NIS(0.664)GAS(0.006)S(0.013)DIS(0.001)LDEQYK ;; 198.88 5.12E-17 47905000 6467.6 5381.2 5027.7 5611.4 6375.3 6613.1 5588.4 4002.58 5517.4 5720.42 TRUE FALSE FALSE 5709.477732 5546.988394 5299.51267 5840.257147 5905.00682 6486.966136 5803.94646 4458.217528 5289.970437 5686.394687 1.004059346 0.975484239 0.931963566 1.027057999 1.038444769 1.140787176 1.020672461 0.784014789 0.930285484 1 12.47329852 -4.25976458 24.91135348 1.009833945 0.784014709 0.583589645 0.056642015 70.58974083 1049869.937 0.007291475 0.062286566 5.50E-05 4.25976458 -0.225819236 KEEPEPETEAVSS(ph)SQEIPTMPQPIEK ddPTM_HeLa_CUDC101_4h_R1 2 KEEPEPETEAVSSSQEIPTMPQPIEK 26 1 A0A0A0MRY2;B0QZE2;B7Z2J6;E7ENI9;J3QKD2;Q15326-4;Q15326-5;Q15326-2;Q15326-6;Q15326-3;Q15326 A0A0A0MRY2 ZMYND11 Zinc finger MYND domain-containing protein 11 1 0 KEEPEPETEAVS(0.106)S(0.445)S(0.445)QEIPT(0.003)MPQPIEK;KEEPEPETEAVS(0.018)S(0.49)S(0.49)QEIPT(0.001)MPQPIEK ; 113.31 4.36E-08 54076000 5004.9 4887.9 5323.8 4731.6 5516 6551.9 7457.8 41611 4726.1 6732.4 TRUE FALSE FALSE 4418.233209 5038.490405 5611.620732 4924.5751 5109.095669 6426.933424 7745.449844 46347.82804 4531.288158 6692.355385 0.660191062 0.752872511 0.838512065 0.735850805 0.763422648 0.96033953 1.157357821 6.925488169 0.67708421 1 12.70829834 -4.259757398 4.653977106 0.829542971 7.303389916 0.996487279 0.108594011 0.009687042 0.56181771 0.019827526 0.203769872 5.50E-05 4.259757398 6.473846944 up KNTFTAWSDEES(ph)DYEIDDRDVNK ddPTM_HeLa_CUDC101_4h_R1 1 KNTFTAWSDEESDYEIDDRDVNK 23 2 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 0 KNT(0.007)FT(0.061)AWS(0.046)DEES(0.718)DY(0.168)EIDDRDVNK 51.431 0.030951 34105000 1823.8 2071.8 1929.7 1871.1 2114.1 2087.4 1760.8 2763.3 2187 2023 TRUE FALSE FALSE 1610.016929 2135.629702 2034.025419 1947.411546 1958.147055 2047.586323 1828.714646 3077.862902 2096.850934 2010.967106 0.800618232 1.061991365 1.011466281 0.968395525 0.973734005 1.018209754 0.90937074 1.530538661 1.042707724 1 10.97367377 -4.259757144 24.88035815 0.937907131 1.530538872 0.804493882 0.079981704 47.79061189 706759.2454 0.013092314 0.111911216 5.50E-05 4.259757144 0.592631742 S(ph)T(ph)DVSQRHLDNT(ph)RAAT(ph)S(ph)PGVGQSAPGTRK ddPTM_HeLa_CUDC101_4h_R1 1 STDVSQRHLDNTRAATSPGVGQSAPGTRK 29 3 Q6IE81-2;Q6IE81 Q6IE81-2 JADE1 Protein Jade-1 5 0 S(0.927)T(0.927)DVS(0.618)QRHLDNT(0.672)RAAT(0.915)S(0.915)PGVGQS(0.012)APGT(0.013)RK 41.423 0.0026373 0 195.16 218.49 308.22 242.34 153.03 248.68 204.83 78.579 151.93 287.76 TRUE FALSE FALSE 172.2836406 225.2214179 324.8833055 252.2236727 141.7412818 243.9368433 212.7303617 87.52411573 145.6673811 286.0483907 0.602288446 0.787354256 1.135763444 0.881751763 0.495515047 0.852781736 0.743686623 0.305976606 0.509240345 1 8.160115418 -4.259728961 3.239383485 0.814331386 0.232572772 0.336041208 0.196057261 0.288825963 4.757909061 0.027870482 0.421630539 5.50E-05 4.259728961 -0.581758614 SSLSS(ph)LSPPSSPLDTPFLPASR ddPTM_HeLa_CUDC101_4h_R1 1 SSLSSLSPPSSPLDTPFLPASR 22 0 Q9ULE0;Q9ULE0-2 Q9ULE0 WWC3 Protein WWC3 1 0 S(0.001)S(0.001)LS(0.021)S(0.483)LS(0.483)PPS(0.003)S(0.007)PLDTPFLPASR 151.96 2.67E-12 0 1081 914.45 695.62 971.39 938.93 937.34 885.3 978.34 1190.7 892.79 TRUE FALSE FALSE 954.2868187 942.6231206 733.2273213 1011.007483 869.6670045 919.4618012 919.4463176 1089.710271 1141.618842 887.4796454 1.075277415 1.062134918 0.826190578 1.139189488 0.979928958 1.036037058 1.036019612 1.22787072 1.286360592 1 9.793570221 -4.259724711 4.881263072 1.026910828 1.238752799 0.161785294 0.112607742 0.138368345 9.691666722 0.009989762 0.099008011 5.50E-05 4.259724711 0.211841971 TET(ph)QEKNPLPSKETIEQEK ddPTM_HeLa_CUDC101_4h_R1 1 TETQEKNPLPSKETIEQEK 19 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 T(0.127)ET(0.873)QEKNPLPSKETIEQEK 109.54 0.00092319 21565000 1770.4 1322.8 1480.4 1318.5 1585 1474.4 1599.4 2641.1 1478.4 1498.9 TRUE FALSE FALSE 1562.876396 1363.5539 1560.434902 1372.274129 1468.077708 1446.278277 1661.089394 2941.752148 1417.459726 1489.984476 1.048921261 0.91514638 1.047282658 0.920998944 0.985297318 0.970666675 1.114836712 1.974350871 0.951325164 1 10.54108158 -4.259723506 3.548957245 1.005264987 2.090519707 0.97368617 0.048604867 0.030820978 0.67950963 0.00658622 0.089134749 5.50E-05 4.259723506 1.08525472 ESS(ph)PLYSPTFSDSTSAVK ddPTM_HeLa_CUDC101_4h_R1 4 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ES(0.099)S(0.901)PLYSPTFSDSTSAVK;ES(0.073)S(0.927)PLYSPTFSDSTSAVK;ES(0.095)S(0.905)PLYSPTFSDSTSAVK;ES(0.027)S(0.973)PLYSPTFSDSTSAVK ;;; 237.4 6.60E-44 111644000 8609 7713 8355.3 7425.83 8532 8215.3 7822.7 8307.8 9148.2 8481 TRUE FALSE FALSE 7599.86607 7950.628388 8807.012791 7728.687445 7902.611358 8058.60684 8124.424159 9253.526371 8771.107324 8430.554635 0.901466914 0.943072992 1.04465402 0.916747211 0.937377397 0.955880982 0.963687979 1.097617745 1.040395052 1 13.04141183 -4.259716959 4.442533107 0.954786419 1.107667417 0.38824 0.047096927 0.140892577 6.83655664 0.006308937 0.067470825 5.50E-05 4.259716959 0.152880998 SPPAPPPYK(ac)APR ddPTM_HeLa_CUDC101_4h_R1 1 SPPAPPPYKAPR 12 1 A0A669KBI7;Q9UMN6 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 0 1 SPPAPPPYK(1)APR 97.965 0.014752 1494900 0 135.27 136.18 214.87 177.11 220.69 333.97 207.48 0 135.49 FALSE TRUE FALSE 0 139.4375084 143.5423027 223.6333273 164.0449482 216.4807059 346.8513348 231.0986845 0 134.6840995 0 1.035293022 1.065770223 1.660428575 1.217997884 1.607321925 2.575295348 1.715857221 0 1 7.073435729 -6.085295316 0.882661364 0.543133044 2.014156343 0.671585338 0.424981669 0.302198105 0.459370855 0.089523172 0.230710234 8.22E-07 6.085295316 1.471023299 GFEGSCS(ph)QKESEEGNPVR ddPTM_HeLa_CUDC101_4h_R1 2 GFEGSCSQKESEEGNPVR 18 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 GFEGS(0.066)CS(0.934)QKESEEGNPVR;GFEGS(0.155)CS(0.845)QKESEEGNPVR ; 188.58 1.03E-10 34068500 3506.3 2872.77 2604.86 3213.2 3517.1 3544 3914.2 19833.5 3135.3 2859.6 TRUE FALSE FALSE 3095.296829 2961.276639 2745.686611 3344.248185 3257.65054 3476.404105 4065.172005 22091.26547 3006.061607 2842.590972 1.088899831 1.041752636 0.965909847 1.176478859 1.146014524 1.222970219 1.430093899 7.771524531 1.057507618 1 11.47299081 -4.259714121 4.652857938 1.070631174 8.187431011 0.998539171 0.076357458 0.006232278 0.361091719 0.014011391 0.144093794 5.50E-05 4.259714121 7.116799837 up EEPLSEEEPCTS(ph)TAIASPEKK ddPTM_HeLa_CUDC101_4h_R1 1 EEPLSEEEPCTSTAIASPEKK 21 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 EEPLSEEEPCT(0.126)S(0.423)T(0.338)AIAS(0.114)PEKK 107.56 1.81E-05 18557000 2514.9 2251.9 2110.8 2152 1990.7 2183 2054.9 2644.3 2113.6 2166.4 TRUE FALSE FALSE 2220.107234 2321.27837 2224.916233 2239.767862 1843.850027 2141.362912 2134.158181 2945.316423 2026.476513 2153.514156 1.030922981 1.077902536 1.033156075 1.040052537 0.856205204 0.994357481 0.991011912 1.367679156 0.941009144 1 11.07247709 -4.259697069 24.93273215 1.008939076 1.36767928 0.776470716 0.059455689 50.31614146 719968.5367 0.007725573 0.066580817 5.50E-05 4.259697069 0.358740204 VVDVEEQQLEES(ph)GPHDLTETSYLPR ddPTM_HeLa_CUDC101_4h_R1 2 VVDVEEQQLEESGPHDLTETSYLPR 25 0 P38398-8;P38398-4;P38398;P38398-7;K7EPC7;H0Y8B8;B7ZA85;E7EUM2;A0A2R8Y7V5;P38398-6;P38398-5;P38398-3 P38398-8 BRCA1 Breast cancer type 1 susceptibility protein 1 0 VVDVEEQQLEES(1)GPHDLTETSYLPR;VVDVEEQQLEES(1)GPHDLTETSYLPR ; 165.3 9.78E-12 41783000 2947.8 2698.5 2428.5 2385.1 2847.7 3126.3 2611.8 6558.7 3109.4 3551.6 TRUE FALSE FALSE 2602.263353 2781.637586 2559.792056 2482.374687 2637.630844 3066.671036 2712.538001 7305.315897 2981.229216 3530.474925 0.737085918 0.787893313 0.725056008 0.703127692 0.74710369 0.868628471 0.768320993 2.069216197 0.844427245 1 11.78564655 -4.259659137 24.99446051 0.831662428 2.069216612 0.947654843 0.089317347 34.1405663 479290.505 0.017203168 0.14818474 5.50E-05 4.259659137 1.237554184 SGGDFKPTS(ph)PSLPASK ddPTM_HeLa_CUDC101_4h_R1 1 SGGDFKPTSPSLPASK 16 1 Q5T5P2;Q5T5P2-2;Q5T5P2-7;Q5T5P2-9;Q5T5P2-10 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 S(0.016)GGDFKPT(0.212)S(0.771)PS(0.001)LPASK 146.1 2.17E-05 0 1314.1 997.44 1086.9 1261.4 1264.2 1219.5 1193.4 1569.1 1202.6 1273.9 TRUE FALSE FALSE 1160.06319 1028.169944 1145.661102 1312.845344 1170.942485 1196.240069 1239.429838 1747.720001 1153.028319 1266.322786 0.916088064 0.811933541 0.904714907 1.036738309 0.924679314 0.944656514 0.978762959 1.380153639 0.910532711 1 10.30642948 -4.259650702 4.218432604 0.947367816 1.414986317 0.839790464 0.058123619 0.069906701 2.799161482 0.008768252 0.098441518 5.50E-05 4.259650702 0.467618501 TRLS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 TRLSPPR 7 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 T(0.001)RLS(0.999)PPR 112.3 0.0048332 13332000 12679 12860 11811 11974 12284 11752 11607 12493 12952 13062 TRUE FALSE FALSE 11192.78684 13256.20136 12449.53839 12462.35148 11377.83379 11527.85018 12054.68588 13915.15262 12418.11308 12984.30664 0.862024223 1.020940257 0.958814262 0.959801075 0.876275808 0.887829477 0.928404281 1.07169008 0.956394008 1 13.66448136 -4.259628332 24.14040086 0.935271538 1.071690147 0.393332421 0.049269255 94.04477607 1253402.583 0.008347229 0.071278136 5.50E-05 4.259628332 0.136418609 SPPLSPVGTTPVK(ac)LK ddPTM_HeLa_CUDC101_4h_R1 2 SPPLSPVGTTPVKLK 15 1 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 0 1 ; SPPLSPVGTTPVK(1)LK;SPPLSPVGTTPVK(1)LK 159.99 3.97E-12 202420 0 0 0 82.779 141.82 0 115.96 0 0 0 FALSE TRUE FALSE 0 0 0 86.15508542 131.3582211 0 120.432616 0 0 0 0 S(ph)SSVGS(ph)SSSYPISPAVSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 S(0.534)S(0.113)S(0.366)VGS(0.96)S(0.021)S(0.005)S(0.001)YPISPAVSR 147.49 3.08E-06 0 1946.3 1294.4 1377.6 1332.2 1847.8 1603.9 1496.9 1748.8 1245 1536 TRUE FALSE FALSE 1718.157664 1334.27893 1452.077223 1386.532874 1711.491475 1573.30828 1554.635934 1947.876323 1193.680573 1526.863804 1.125285477 0.87386899 0.951019482 0.908092045 1.120919542 1.030418218 1.018189003 1.275736787 0.781785887 1 10.57635566 -4.259609067 24.41174839 1.030782976 1.2757369 0.303730914 0.1123381 92.41332587 1232414.689 0.012411592 0.106827824 5.50E-05 4.259609067 0.244953924 TNLQPLESTQS(ph)QDF ddPTM_HeLa_CUDC101_4h_R1 2 TNLQPLESTQSQDF 14 0 Q9Y248 Q9Y248 GINS2 DNA replication complex GINS protein PSF2 1 0 TNLQPLESTQS(1)QDF;TNLQPLES(0.001)T(0.009)QS(0.99)QDF ; 193.51 2.63E-16 25752000 9936.8 8266.7 7581.2 7176.6 9876.8 10452.2 9612.1 25231 9527.9 10115.8 TRUE FALSE FALSE 8772.023367 8521.387229 7991.062604 7469.292768 9148.208141 10252.8417 9982.841917 28103.19505 9135.155929 10055.63077 0.87234939 0.847424435 0.794685364 0.74279704 0.90975975 1.01961199 0.992761383 2.794771973 0.90846175 1 13.29571596 -4.259581033 4.938591956 0.912278546 2.893471835 0.979537865 0.082274973 0.019983561 1.466904909 0.013715411 0.135025583 5.50E-05 4.259581033 1.981193289 up MDS(ph)FDEDLARPSGLLAQER ddPTM_HeLa_CUDC101_4h_R1 2 MDSFDEDLARPSGLLAQER 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER ; 99.371 0.0050454 35218000 925.43 503.02 725.73 738.68 970.33 731.62 1163.49 3565.1 1049.17 958.37 TRUE FALSE FALSE 816.9524983 518.51745 764.965159 768.8065632 898.7506891 717.6655675 1208.366199 3970.936573 1005.922769 952.6695726 0.857540245 0.544278378 0.802970076 0.807002328 0.943402324 0.753320551 1.268400119 4.168220218 1.055898915 1 9.895832101 -4.259567591 3.469150057 0.878116634 4.582438704 0.980832802 0.138420921 0.028796928 0.589465572 0.020111428 0.280035044 5.50E-05 4.259567591 3.70432207 up YLSVPPS(ph)PNISTSESR ddPTM_HeLa_CUDC101_4h_R1 2 YLSVPPSPNISTSESR 16 0 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 YLSVPPS(0.896)PNIS(0.045)T(0.045)S(0.012)ES(0.002)R;YLSVPPS(0.843)PNIS(0.037)T(0.037)S(0.079)ES(0.004)R ; 130.47 0.00019508 16499000 6623.3 6257.3 5667.9 5476.2 6354.3 5859.9 5831 6934.3 6108.4 6672.8 TRUE FALSE FALSE 5846.926814 6450.079996 5974.323818 5699.543106 5885.555949 5748.132171 6055.903623 7723.672683 5856.609167 6633.109889 0.881475946 0.972406624 0.900682171 0.859256548 0.88729963 0.866581779 0.912981049 1.16441199 0.882935646 1 12.69546971 -4.259555738 24.87926881 0.925840285 1.164412076 0.722210663 0.046589407 83.2664262 1099694.614 0.00805865 0.070110191 5.50E-05 4.259555738 0.238571791 RNSS(ph)SPVSPASVPGQR ddPTM_HeLa_CUDC101_4h_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 RNS(0.003)S(0.928)S(0.069)PVSPASVPGQR 210.91 1.39E-34 0 1210.7 1506.1 1382.1 1195.8 1700.2 1345.1 1299.6 1610.4 1631.2 1611.2 TRUE FALSE FALSE 1068.783581 1552.501156 1456.820507 1244.569893 1574.779633 1319.444459 1349.726007 1793.721427 1563.961246 1601.616511 0.667315537 0.969333886 0.909593837 0.777071093 0.983243881 0.823820465 0.842727331 1.11994439 0.976489213 1 10.64531304 -4.259550225 24.11341876 0.856535235 1.119944535 0.28564979 0.104854418 107.7171946 1374729.715 0.017785766 0.153382977 5.50E-05 4.259550225 0.263409299 TPEPS(ph)SPVKEPPPVLAKPK ddPTM_HeLa_CUDC101_4h_R1 1 TPEPSSPVKEPPPVLAKPK 19 2 Q86TC9;A0A087WX60;Q86TC9-2 Q86TC9 MYPN Myopalladin 1 0 T(0.153)PEPS(0.424)S(0.424)PVKEPPPVLAKPK 90.968 0.0027529 79292000 2918.9 2777.1 3032.9 2639.7 2837.8 2917.7 2549.5 3545.6 2919.3 2721 TRUE FALSE FALSE 2576.750967 2862.659159 3196.867748 2747.358376 2628.461148 2862.049734 2647.835069 3949.216772 2798.965218 2704.815371 0.952653181 1.058356585 1.181917177 1.015728617 0.971771004 1.058131274 0.978933755 1.460068888 1.034808234 1 11.4013144 -4.259540466 24.95678098 1.003802949 1.460069047 0.790843168 0.065598158 55.88280336 734389.7154 0.00985536 0.085582062 5.50E-05 4.259540466 0.456266098 RPS(ph)VDAPVTDVGFLR ddPTM_HeLa_CUDC101_4h_R1 2 RPSVDAPVTDVGFLR 15 1 A0A1B0GTT1;A0A1B0GVM0;Q9BUH8;G3V536;G3V3S3 A0A1B0GTT1 BEGAIN Brain-enriched guanylate kinase-associated protein 1 0 RPS(1)VDAPVTDVGFLR;RPS(1)VDAPVTDVGFLR ; 112.58 0.0010994 16460000 6282.6 5109 4776.4 4939 6135.8 5481.3 5294.9 5784.8 5801 5849.1 TRUE FALSE FALSE 5546.163152 5266.402234 5034.626632 5140.433768 5683.174258 5376.753335 5499.126067 6443.318249 5561.880325 5814.309293 0.953881686 0.905765753 0.865902789 0.884100503 0.977446154 0.924744981 0.945791803 1.10818292 0.956584874 1 12.5053921 -4.259531644 24.2027372 0.953984773 1.108183 0.561244732 0.043085985 79.94903767 1014153.958 0.007299848 0.063357036 5.50E-05 4.259531644 0.154198226 RSNS(ph)TTQVSQPR ddPTM_HeLa_CUDC101_4h_R1 4 RSNSTTQVSQPR 12 1 Q9UPN4-3;Q9UPN4-2;I3L2J8;Q9UPN4 Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa 1 0 RS(0.004)NS(0.873)T(0.122)TQVSQPR;RSNS(0.922)T(0.038)T(0.038)QVS(0.001)QPR;RS(0.263)NS(0.568)T(0.161)T(0.009)QVSQPR;RS(0.27)NS(0.491)T(0.175)T(0.064)QVSQPR ;;; 139 0.00068256 16022920 1572.048 1397.223 1459.96 1298.9 1969 1490.344 1405.11 2078.805 1538.67 1610.84 TRUE FALSE FALSE 1387.774917 1440.269785 1538.889854 1351.874756 1823.750793 1461.918171 1459.305563 2315.447758 1475.245371 1601.258652 0.866677544 0.899461048 0.961050141 0.844257581 1.138948283 0.912980654 0.911349058 1.446017329 0.921303607 1 10.64499065 -4.259511739 24.92685593 0.93935056 1.446017507 0.789071977 0.07855498 56.9610958 736520.5484 0.011131391 0.097371836 5.50E-05 4.259511739 0.506666948 EGDIIPPLTGAT(ph)PPLIGHLK ddPTM_HeLa_CUDC101_4h_R1 2 EGDIIPPLTGATPPLIGHLK 20 0 Q12888;Q12888-3;Q12888-2;A6NNK5;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 EGDIIPPLT(0.064)GAT(0.936)PPLIGHLK;EGDIIPPLT(0.013)GAT(0.987)PPLIGHLK ; 125.62 2.95E-05 343710000 10105.2 8476.1 7144.7 8341.2 9332.7 9284.7 8364.2 24012.1 10702.6 11683.4 TRUE FALSE FALSE 8920.683774 8737.238594 7530.964094 8681.39019 8644.245314 9107.609817 8686.809996 26745.5404 10261.4343 11613.90662 0.768103625 0.752308322 0.648443658 0.747499569 0.744301259 0.784198644 0.747966234 2.302889225 0.883547168 1 13.50356572 -4.25951171 24.99687162 0.829612819 2.302889724 0.954767845 0.098626396 33.86486158 439105.2995 0.018597072 0.161818206 5.50E-05 4.25951171 1.473276905 AALAPAKES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 AALAPAKESPR 11 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;H0YAB7;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 AALAPAKES(1)PR;AALAPAKES(1)PR ; 101.38 0.0070076 1892960000 16918.6 14478.8 13061.4 13909.1 14884.6 15133 14841 16229.6 15806.6 15464.9 TRUE FALSE FALSE 14935.42735 14924.87467 13767.53879 14476.37322 13786.59271 14844.36324 15413.42234 18077.11206 15155.04526 15372.91409 0.971541717 0.970855271 0.895571179 0.941680487 0.896810626 0.965618044 1.002635041 1.17590666 0.985827747 1 13.90810305 -4.259481845 2.912338411 0.968099425 1.212302386 0.775041655 0.03523897 0.17563854 2.093348301 0.005800171 0.100541106 5.50E-05 4.259481845 0.244202961 T(ph)LSTSDDVEDRENEK ddPTM_HeLa_CUDC101_4h_R1 1 TLSTSDDVEDRENEK 15 1 Q96A65;Q96A65-2 Q96A65 EXOC4 Exocyst complex component 4 1 0 T(0.779)LS(0.197)T(0.014)S(0.01)DDVEDRENEK 91.14 0.012276 5684300 1990.8 1619.7 1417.7 1228.6 1930.9 1772.2 1578.6 3027.4 1711.6 1878.9 TRUE FALSE FALSE 1757.441442 1669.601037 1494.34515 1278.707618 1788.461354 1738.398238 1639.487131 3372.026979 1641.047124 1867.724219 0.940953393 0.893922679 0.800088758 0.684634062 0.957561794 0.930757453 0.877799363 1.805420171 0.878634601 1 10.86706573 -4.259477218 24.98426156 0.927306963 1.805420471 0.895172722 0.093491661 45.48535946 579121.781 0.014677786 0.128191304 5.50E-05 4.259477218 0.878113509 QIANS(ph)QDGYVWQVTDMNR ddPTM_HeLa_CUDC101_4h_R1 1 QIANSQDGYVWQVTDMNR 18 0 P10155-3;P10155-5;P10155-4;P10155;D6RDN1;D6RE09;P10155-2 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 1 0 QIANS(1)QDGYVWQVTDMNR 110.37 0.0004766 26954000 906.28 633.89 634.42 641.42 645.26 826.29 923.07 3086 777.54 888.15 TRUE FALSE FALSE 800.0472322 653.4193996 668.7186642 667.5798801 597.6604553 810.5298949 958.6731191 3437.297766 745.4894721 882.8672443 0.906191998 0.740110593 0.757439659 0.756149789 0.676953935 0.918065428 1.085863277 3.8933348 0.84439589 1 9.786052708 -4.259455106 4.367481275 0.891611081 4.114881213 0.985752466 0.109784903 0.020699422 0.941874184 0.018946937 0.206312156 5.50E-05 4.259455106 3.223270132 up SSVSDAPVHITAS(ph)GEPVPISEESEELDQK ddPTM_HeLa_CUDC101_4h_R1 1 SSVSDAPVHITASGEPVPISEESEELDQK 29 0 O14646-2;O14646;H0Y8V4;A0A087WVF4 O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 0 SSVSDAPVHIT(0.08)AS(0.89)GEPVPIS(0.024)EES(0.006)EELDQK 63.042 0.00090348 4339200 314.95 249.98 195.05 155.12 449.61 596.6 542.76 4063.6 350.55 511.35 TRUE FALSE FALSE 278.0320384 257.6815875 205.594993 161.4464641 416.443166 585.220849 563.694435 4526.183798 336.1001806 508.3084675 0.546975028 0.506939396 0.404468952 0.317615138 0.819272534 1.151310447 1.108961332 8.9044037 0.661213027 1 8.989560453 -4.259447224 4.830338802 0.733938726 9.36214009 0.989705008 0.250580835 0.014598933 0.97998218 0.042100047 0.421842875 5.50E-05 4.259447224 8.628201364 up ILDPEGLALGAVIAS(ph)SKK ddPTM_HeLa_CUDC101_4h_R1 2 ILDPEGLALGAVIASSKK 18 1 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 0 ILDPEGLALGAVIAS(0.605)S(0.395)KK;ILDPEGLALGAVIAS(0.824)S(0.176)KK ; 99.603 0.0012451 19803200 4587.5 3669.5 3718.5 3576.3 4554.2 4663.8 4106.3 1780.42 4014.6 4331.8 TRUE FALSE FALSE 4049.760204 3782.552946 3919.533358 3722.156972 4218.245739 4574.845785 4264.681367 1983.095816 3849.116489 4306.034261 0.940484901 0.878430759 0.910242028 0.864404867 0.979612675 1.062426704 0.990396525 0.460538792 0.89388896 1 12.07214408 -4.259414379 24.91475204 0.961339769 0.460538612 0.851482244 0.060627699 47.02672324 578552.1645 0.008650844 0.076015781 5.50E-05 4.259414379 -0.500801157 RVSSTWT(ph)TTTSATGLPTLEPAPVR ddPTM_HeLa_CUDC101_4h_R1 1 RVSSTWTTTTSATGLPTLEPAPVR 24 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 RVS(0.093)S(0.073)T(0.073)WT(0.543)T(0.154)T(0.045)T(0.017)S(0.002)AT(0.001)GLPTLEPAPVR 77.149 0.0032038 34219000 535.63 576.56 540.57 453.08 625.12 592.29 514.94 267.69 464.43 529.7 TRUE FALSE FALSE 472.8442634 594.3231302 569.7948493 471.5585608 579.006143 580.9930551 534.8014083 298.1627476 445.2859988 526.5493208 0.898005647 1.128713127 1.082130062 0.895563895 1.099623758 1.103397217 1.015672012 0.566257966 0.845668167 1 9.040424862 -4.259392027 24.86725573 0.990813835 0.56625781 0.654221281 0.095564105 81.89902052 994670.6635 0.013065391 0.11432606 5.50E-05 4.259392027 -0.424556025 TATNNASSSCQST(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 TATNNASSSCQSTPR 15 0 Q92833-2;Q92833-3;Q92833 Q92833-2 JARID2 Protein Jumonji 1 0 TATNNASSSCQS(0.401)T(0.599)PR 170.42 3.53E-06 2146600 710.83 511.75 833.18 687.81 607.76 575.95 616.38 213.04 372.52 572.18 TRUE FALSE FALSE 627.5075849 527.5164109 878.224231 715.8618648 562.9267556 564.9647133 640.1539831 237.2916125 357.1645679 568.7766479 1.103258348 0.927457927 1.544058172 1.258599254 0.989714957 0.993298011 1.125492731 0.417196475 0.627952236 1 9.151718424 -4.259302368 24.80666598 1.084794034 0.41719622 0.425741097 0.223872686 97.35381276 1130004.298 0.023969877 0.211739479 5.50E-05 4.259302368 -0.667597814 KCQEQAVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 KCQEQAVSPK 10 1 Q5T7V8-3;Q5T7V8-4;Q5T7V8 Q5T7V8-3 GORAB RAB6-interacting golgin 1 0 KCQEQAVS(1)PK 70.438 0.034267 2870300 2879.2 1771.3 3297.3 4175.8 2988.1 2881.3 2475.6 1005.9 3653.2 2713.1 TRUE FALSE FALSE 2541.704541 1825.871653 3475.562012 4346.107173 2767.673816 2826.344003 2571.084721 1120.40759 3502.61355 2696.962361 0.942432337 0.677010432 1.288695038 1.611482324 1.026218926 1.047973099 0.953326142 0.415433158 1.298725411 1 11.39711967 -4.25929914 3.438113691 1.026849007 0.336842072 0.38135244 0.248002255 0.26525274 5.272464126 0.033869748 0.477780248 5.50E-05 4.25929914 -0.690006935 TAQALSSGSGS(ph)QETK ddPTM_HeLa_CUDC101_4h_R1 1 TAQALSSGSGSQETK 15 0 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 TAQALSS(0.004)GS(0.03)GS(0.964)QET(0.001)K 125.61 0.00079261 77851000 3552.8 2293.7 2587.1 2481.4 2405.3 2836 3204.4 8242.9 2807.1 2838 TRUE FALSE FALSE 3136.34617 2364.366178 2726.966452 2582.602218 2227.865811 2781.908025 3327.994781 9181.238417 2691.39015 2821.11945 1.111738168 0.838095026 0.966625661 0.915452984 0.789709848 0.986100757 1.179671701 3.254466385 0.954014957 1 11.46205204 -4.259285295 4.070666892 1.001765987 3.45324297 0.98018229 0.097633991 0.025931538 0.912686716 0.015980554 0.186534393 5.50E-05 4.259285295 2.451476983 up NTLQPEEALSTSDPRVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 NTLQPEEALSTSDPRVSPR 19 1 Q9BXL7 Q9BXL7 CARD11 Caspase recruitment domain-containing protein 11 1 0 NTLQPEEALS(0.026)T(0.017)S(0.017)DPRVS(0.94)PR 74.953 0.0057463 15122000 854.77 879.46 761.78 743.95 881.18 852.29 812.48 997.94 898.43 999.64 TRUE FALSE FALSE 754.5751563 906.5551202 802.9641311 774.2914966 816.177107 836.0339883 843.8176258 1111.541456 861.3963351 993.6940968 0.75936363 0.912308046 0.808059677 0.779205088 0.821356502 0.841339393 0.849172425 1.118595209 0.866862687 1 9.956657984 -4.259284458 24.19845333 0.864418955 1.118595345 0.585891701 0.06691446 100.8621637 1132490.116 0.013196173 0.116341784 5.50E-05 4.259284458 0.25417639 QDKPMDTSVLS(ph)EEGGEPFQK ddPTM_HeLa_CUDC101_4h_R1 3 QDKPMDTSVLSEEGGEPFQK 20 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 QDKPMDTSVLS(1)EEGGEPFQK;QDKPMDTSVLS(1)EEGGEPFQK;QDKPMDT(0.029)S(0.068)VLS(0.903)EEGGEPFQK ;; 110.94 7.74E-05 120509000 11787.9 10285.6 9447.4 9387.3 10201.9 9804.3 9743.6 19059.4 11759.6 12219.6 TRUE FALSE FALSE 10406.14023 10602.48714 9958.155021 9770.154669 9449.326162 9617.299313 10119.41392 21229.04506 11274.86431 12146.91728 0.856689808 0.872854149 0.81980924 0.804332033 0.777919693 0.791748153 0.833084945 1.747689934 0.928207878 1 13.5683026 -4.259281756 24.97082521 0.886438735 1.747690236 0.93357608 0.071049772 46.33122477 536167.3486 0.01326749 0.117463875 5.50E-05 4.259281756 0.861251501 AAEAGGAEEQYGFLTT(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 2 AAEAGGAEEQYGFLTTPTK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AAEAGGAEEQYGFLT(0.195)T(0.804)PT(0.001)K;AAEAGGAEEQYGFLT(0.142)T(0.858)PTK ; 212.72 1.02E-23 351820000 10817.6 10683.4 9750.2 9887 10899.6 9684.3 9326.3 11387.6 10584.7 9851.4 TRUE FALSE FALSE 9549.577326 11012.54289 10277.3253 10290.2346 10095.55822 9499.588113 9686.018515 12683.91835 10148.39419 9792.803435 0.97516277 1.124554676 1.049477341 1.050795583 1.030916049 0.970058082 0.989095572 1.295228526 1.036311436 1 13.25750621 -4.259261469 24.88951785 1.007057056 1.295228631 0.742874469 0.046585287 70.1870058 802050.1516 0.006955352 0.061602117 5.50E-05 4.259261469 0.288171575 AIPELDAYEAEGLALDDEDVEELTAS(ph)QR ddPTM_HeLa_CUDC101_4h_R1 1 AIPELDAYEAEGLALDDEDVEELTASQR 28 0 P49736;F8WDM3;C9J013;C9JZ21;H7C4N9 P49736 MCM2 DNA replication licensing factor MCM2 1 0 AIPELDAYEAEGLALDDEDVEELT(0.109)AS(0.891)QR 119.58 1.58E-13 5991800 1036.1 1045.8 1107.7 899.3 1173 1012.4 828.6 2202 1246.8 911.62 TRUE FALSE FALSE 914.6499286 1078.019858 1167.585613 935.9773411 1086.470127 993.0901568 860.5593796 2452.666779 1195.406376 906.1976437 1.009327198 1.189607881 1.288444768 1.032862254 1.198932854 1.095886933 0.949637627 2.706547293 1.319145315 1 9.823681929 -4.259242346 24.99947035 1.053995675 2.706547862 0.924113159 0.135155895 30.61124506 348293.4243 0.016199793 0.143799161 5.51E-05 4.259242346 1.652552187 TGLSLWDT(ph)SPSYIDK ddPTM_HeLa_CUDC101_4h_R1 1 TGLSLWDTSPSYIDK 15 0 E7EPP6;O14757-2;O14757-3;O14757 E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 1 0 TGLSLWDT(0.771)S(0.217)PS(0.012)YIDK 227.42 3.13E-32 16643000 1965.2 2026.1 1576.8 1660.3 1876.6 1854 1658.9 2200.6 2036.1 1771 TRUE FALSE FALSE 1734.842235 2088.521739 1662.046578 1728.01421 1738.166957 1818.638039 1722.884329 2451.107409 1952.171096 1760.466013 0.985444889 1.186345958 0.944094669 0.981566357 0.987333435 1.033043538 0.978652423 1.392306009 1.108894509 1 10.78174166 -4.259215474 24.87835431 1.003391682 1.392306154 0.702154289 0.071188708 62.36283813 697587.9895 0.00816879 0.072918383 5.51E-05 4.259215474 0.388914471 AQAAAPAS(ph)VPAQAPK ddPTM_HeLa_CUDC101_4h_R1 2 AQAAAPASVPAQAPK 15 0 A0A3B3ITT5;P47914 A0A3B3ITT5 RPL29 60S ribosomal protein L29 1 0 AQAAAPAS(1)VPAQAPK;AQAAAPAS(1)VPAQAPK ; 173.51 5.15E-07 29003000 10393.1 8335.7 8866.9 8775 9844.1 9070.2 8720.3 6295.1 8298.8 9257.3 TRUE FALSE FALSE 9174.836573 8592.513037 9346.271435 9132.882429 9117.920355 8897.201047 9056.644892 7011.708738 7956.719951 9202.237168 0.997022399 0.93374175 1.015652092 0.992463274 0.990837357 0.966851961 0.9841786 0.761956969 0.864650607 1 13.16776892 -4.259195173 5.161164252 0.991970452 0.751339704 0.632572805 0.045702809 0.033193328 2.918444661 0.002942318 0.028257698 5.51E-05 4.259195173 -0.240630748 MLS(ph)QDAPTVK ddPTM_HeLa_CUDC101_4h_R1 2 MLSQDAPTVK 10 0 A0A0C4DG07;O60934 A0A0C4DG07 NBN Nibrin 1 0 MLS(0.997)QDAPT(0.003)VK;MLS(1)QDAPTVK ; 153.81 0.00023309 45822000 3369.3 2466.4 3113.2 3112.2 3748.3 4313.5 4281.6 24094 1631.2 3333.5 TRUE FALSE FALSE 2974.355762 2542.386861 3281.509009 3239.128968 3471.795377 4231.227174 4446.742746 26836.76357 1563.961246 3313.672194 0.897601087 0.767241511 0.990293794 0.977504345 1.047718414 1.276899744 1.341938033 8.098798553 0.471972227 1 11.69421518 -4.25917812 4.65169553 0.975132079 8.54419783 0.991317881 0.200306987 0.008488235 0.490924592 0.020173092 0.20874373 5.51E-05 4.25917812 7.569065751 up GQPEGPLPSSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 GQPEGPLPSSSPR 13 0 P49815;X5D2U8;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;A0A2R8YGU4;A0A2R8Y5F1;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4;H3BQK4 P49815 TSC2 Tuberin 1 0 GQPEGPLPS(0.023)S(0.221)S(0.756)PR;GQPEGPLPSS(0.029)S(0.97)PR;GQPEGPLPS(0.004)S(0.229)S(0.767)PR;GQPEGPLPS(0.001)S(0.034)S(0.966)PR ;;; 191.63 1.16E-11 161483000 17633.1 14140.5 14118.3 15337.5 16165.8 14479.2 14307.8 10801.9 12452.4 13673.4 TRUE FALSE FALSE 15566.17475 14576.15204 14881.578 15963.02954 14973.28114 14203.03338 14859.65664 12031.54463 11939.1068 13592.07001 1.145239448 1.072401189 1.094872083 1.174436972 1.101618895 1.044949987 1.093259278 0.885188542 0.878387677 1 13.73047757 -4.259175847 24.49810341 1.080786742 0.885188452 0.310539892 0.079094202 107.1110371 1159152.287 0.00854989 0.076557094 5.51E-05 4.259175847 -0.19559829 (ac)AAGGAAPETPAIS(ph)PSKR ddPTM_HeLa_CUDC101_4h_R1 4 AAGGAAPETPAISPSKR 17 1 H0YNW5;H0YMM5 H0YNW5 DUT 1 0 AAGGAAPET(0.001)PAIS(0.85)PS(0.149)KR;AAGGAAPET(0.007)PAIS(0.85)PS(0.143)KR;AAGGAAPET(0.036)PAIS(0.822)PS(0.141)KR;AAGGAAPET(0.023)PAIS(0.822)PS(0.156)KR ;;; 104.16 6.63E-05 131234000 7642.1 7768 7493.7 7771 8809.8 7751.4 7554.3 8526.3 8869.3 9133.7 TRUE FALSE FALSE 6746.304623 8007.322873 7898.832089 8087.934969 8159.918606 7603.55496 7845.671882 9496.899528 8503.7037 9079.372346 0.743036453 0.881924715 0.869975565 0.890803313 0.898731575 0.83745381 0.864120512 1.045986349 0.936595987 1 13.14837685 -4.259166802 23.64048313 0.874709558 1.045986471 0.38346109 0.062670637 110.4071987 1148334.805 0.012576948 0.111324704 5.51E-05 4.259166802 0.171276913 S(ph)ETPPHWR ddPTM_HeLa_CUDC101_4h_R1 1 SETPPHWR 8 0 Q13427;E9PG73;C9JM79 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 1 0 S(0.957)ET(0.043)PPHWR 119.62 0.0048318 7757900 4025.2 2847.1 3152.4 3307 3318.4 3096.7 3068.2 3891.6 3066.7 3107.7 TRUE FALSE FALSE 3553.372158 2934.815776 3322.828279 3441.873754 3073.608243 3037.635607 3186.541502 4334.604014 2940.289328 3089.215262 1.150250745 0.950019836 1.075622123 1.114157953 0.994947902 0.983303315 1.031505166 1.403140813 0.951791662 1 11.59302469 -4.259134239 24.91116572 1.054520555 1.40314094 0.720149361 0.068383324 89.38741599 965923.9323 0.00993367 0.088990118 5.51E-05 4.259134239 0.348620385 ASS(ph)PAQCVT(ph)PVQTVV ddPTM_HeLa_CUDC101_4h_R1 1 ASSPAQCVTPVQTVV 15 0 Q13614;Q13614-2 Q13614 MTMR2 Myotubularin-related protein 2 2 0 AS(0.141)S(0.859)PAQCVT(0.859)PVQT(0.141)VV 112.91 0.0073811 6390600 2462.2 1769.9 1456.4 1786.6 2087.7 1998.6 1775.1 1299.7 2267.9 1488.8 TRUE FALSE FALSE 2173.584648 1824.428521 1535.137389 1859.46527 1933.69453 1960.480035 1843.566202 1447.652594 2174.416202 1479.944551 1.468693301 1.23276816 1.037293855 1.256442526 1.30659931 1.324698302 1.245699509 0.978180293 1.469255183 1 10.53132741 -4.25909441 22.99159405 1.230079781 0.97818001 0.223762214 0.148323468 106.3113405 1042113.99 0.024809438 0.219749111 5.51E-05 4.25909441 -0.251899771 Y(ph)DNMS(ph)TMVYIK ddPTM_HeLa_CUDC101_4h_R1 1 YDNMSTMVYIK 11 0 Q07866-6;Q07866-4;G3V5R9;Q07866-9;Q07866-7;G3V3H3;Q07866-10;Q07866-5;Q07866-3;G5E9S8;F8W6L3;Q07866;Q07866-8;Q07866-2;G3V2E7;G3V2P7 Q07866-6 KLC1 Kinesin light chain 1 2 0 Y(1)DNMS(0.85)T(0.15)MVYIK 87.184 0.038965 4219500 276.1 220.81 309.22 213.14 324.9 267.76 257.31 485.65 423.41 345.64 TRUE FALSE FALSE 243.7359765 227.6128944 325.9373685 221.8327705 300.9327743 262.6529241 267.2345329 540.9344329 405.9568606 343.5841179 0.709392442 0.662466286 0.948639217 0.645643261 0.87586346 0.764450132 0.777784883 1.574387187 1.181535582 1 8.42451954 -4.259079161 24.88940767 0.828177795 1.574387465 0.656622114 0.158952595 80.28526425 846580.7104 0.018892197 0.169471928 5.51E-05 4.259079161 0.746209669 ETCSTLAES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 ETCSTLAESPR 11 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 ETCSTLAES(1)PR;ETCSTLAES(1)PR;ETCSTLAES(1)PR;ETCSTLAES(1)PR ;;; 181.66 1.44E-10 313517000 9820.3 8923 8012.1 8408.2 9565.6 8451.6 8001.7 6225.9 8707.1 7802.9 TRUE FALSE FALSE 8669.179321 9197.907054 8445.258361 8751.122739 8859.964745 8290.399811 8310.328249 6934.63129 8348.189653 7756.488004 1.117668114 1.185833982 1.088799255 1.128232614 1.142264997 1.068834221 1.071403481 0.894042676 1.076284737 1 12.92118786 -4.259075222 4.752989432 1.080172975 0.883072194 0.577114361 0.050380998 0.142531558 8.967983252 0.009116966 0.09286792 5.51E-05 4.259075222 -0.197100781 VADAKGDS(ph)ESEEDEDLEVPVPSR ddPTM_HeLa_CUDC101_4h_R1 2 VADAKGDSESEEDEDLEVPVPSR 23 1 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 1 0 VADAKGDS(0.947)ES(0.053)EEDEDLEVPVPSR;VADAKGDS(0.992)ES(0.008)EEDEDLEVPVPSR ; 89.816 0.00014454 86911000 2935.8 2256.2 2348.95 2093.39 2903.6 2420.7 2810.2 5063.2 2364.4 2516.9 TRUE FALSE FALSE 2591.669974 2325.710848 2475.941342 2178.767493 2689.407213 2374.529181 2918.590355 5639.574222 2266.938431 2501.929367 1.035868562 0.929566949 0.989612806 0.870834933 1.074933309 0.949079223 1.166535872 2.254090102 0.906076111 1 11.28882535 -4.259051447 3.275881768 0.999708199 2.432061662 0.973031212 0.063647459 0.031787844 0.541728749 0.007681063 0.115182226 5.51E-05 4.259051447 1.432353463 up S(ph)TSPIIGSPPVR ddPTM_HeLa_CUDC101_4h_R1 1 STSPIIGSPPVR 12 0 Q86TB9-2;Q86TB9-4;Q86TB9 Q86TB9-2 PATL1 Protein PAT1 homolog 1 1 0 S(0.48)T(0.04)S(0.48)PIIGSPPVR 167.84 8.01E-06 70696000 3816.3 3082.4 2923 3309.3 3459.9 3527.8 3023.6 4090.2 3478.8 3088.9 TRUE FALSE FALSE 3368.959099 3177.36509 3081.026222 3444.267558 3204.67007 3460.513093 3140.221265 4555.811835 3335.402392 3070.527085 1.097192438 1.034794679 1.003419327 1.12171867 1.043687283 1.127009467 1.02269779 1.483723057 1.086263791 1 11.58427061 -4.259048455 24.99769033 1.05233458 1.483723208 0.889997283 0.044661269 52.71948462 551159.4928 0.006657549 0.059973226 5.51E-05 4.259048455 0.431388629 RRS(ph)IQDLTVTGTEPGQVSSR ddPTM_HeLa_CUDC101_4h_R1 1 RRSIQDLTVTGTEPGQVSSR 20 2 Q9UG54;O43318-4;O43318-3;O43318-2;O43318 Q9UG54 DKFZp586F0420;MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 0 RRS(0.997)IQDLT(0.003)VTGTEPGQVSSR 54.875 0.031643 19116000 801.76 926.9 838.36 875.75 1106.4 793.47 1007.3 2343.3 753.05 897.32 TRUE FALSE FALSE 707.7789082 955.4566904 883.6842775 911.4668703 1024.783076 778.3358818 1046.151898 2610.0518 722.0089603 891.9827007 0.793489501 1.071160561 0.990696655 1.021843663 1.148882232 0.872590781 1.172838775 2.926123789 0.809442784 1 9.80087192 -4.259023457 3.496283346 0.94431715 3.172874167 0.967143917 0.107790399 0.039190921 0.822090041 0.016644869 0.230628944 5.51E-05 4.259023457 2.228557017 up VQTT(ph)PPPAVQGQK ddPTM_HeLa_CUDC101_4h_R1 1 VQTTPPPAVQGQK 13 0 Q2M2I8-2;Q2M2I8;E9PG46 Q2M2I8-2 AAK1 AP2-associated protein kinase 1 1 0 VQT(0.037)T(0.963)PPPAVQGQK 117.27 0.012944 25134000 3331.6 2747.8 3021.7 2680.6 2917.8 2755.2 2715.5 2789 2971.8 2755.2 TRUE FALSE FALSE 2941.074898 2832.456461 3185.062242 2789.926455 2702.559707 2702.64915 2820.237745 3106.488486 2849.301146 2738.811948 1.073850616 1.034191655 1.162935719 1.018663022 0.986763516 0.986796174 1.029730335 1.134246727 1.040342017 1 11.4193345 -4.259012815 23.90708958 1.036265039 1.134246792 0.261197128 0.049035002 139.1434274 1370703.754 0.007263818 0.065549085 5.51E-05 4.259012815 0.097981753 TQETLS(ph)QAGQK ddPTM_HeLa_CUDC101_4h_R1 2 TQETLSQAGQK 11 0 O43399-2;O43399-4;O43399;O43399-3;O43399-5;O43399-7;A0A087WYR3;O43399-6 O43399-2 TPD52L2 Tumor protein D54 1 0 TQET(0.013)LS(0.987)QAGQK;TQET(0.009)LS(0.991)QAGQK ; 107.93 0.0075885 20297900 3172 2680.1 3302.4 2615.9 3533.8 2933.4 3209.9 5841.5 3249.8 3096.1 TRUE FALSE FALSE 2800.182968 2762.670704 3480.937733 2722.587709 3273.118614 2877.450282 3333.706918 6506.472748 3115.841868 3077.68426 0.909834386 0.897645915 1.131024965 0.884622164 1.063500456 0.934940052 1.083186785 2.114080653 1.012398156 1 11.58762952 -4.258994478 3.684774589 0.966479273 2.241855629 0.953679847 0.074531688 0.036355889 0.906788121 0.009732763 0.126862784 5.51E-05 4.258994478 1.275376355 up ESGNS(ph)QELAR ddPTM_HeLa_CUDC101_4h_R1 1 ESGNSQELAR 10 0 Q86W50 Q86W50 METTL16 Methyltransferase-like protein 16 1 0 ESGNS(1)QELAR 86.756 0.033384 22928000 862.22 668.57 875.64 854.09 818.58 791.08 1013.2 3139.5 977.11 870.75 TRUE FALSE FALSE 761.1518786 689.1678492 922.9797471 888.9234819 758.1949842 775.991467 1052.279463 3496.88799 936.8331122 865.5707403 0.87936415 0.796200492 1.066325032 1.026979588 0.875948029 0.896508432 1.215705909 4.039979434 1.082329922 1 9.757507921 -4.258987395 3.886271268 0.940937381 4.346087434 0.990843648 0.088495538 0.01486553 0.444446134 0.011696652 0.143720905 5.51E-05 4.258987395 3.405150053 up (ac)S(ph)QKQEEENPAEETGEEK ddPTM_HeLa_CUDC101_4h_R1 2 SQKQEEENPAEETGEEK 17 1 O43768;O43768-2;O43768-3;A0A1W2PRU0;A6NMQ3;Q5T5H1;O43768-9;O43768-4;O43768-8 O43768 ENSA Alpha-endosulfine 1 0 S(1)QKQEEENPAEETGEEK;S(1)QKQEEENPAEETGEEK ; 166.04 4.11E-57 38785000 5027.9 4131.5 4024.2 4090.6 3670.5 4573.2 3905.8 14004.7 4791 6093.1 TRUE FALSE FALSE 4438.537184 4258.786618 4241.760425 4257.432349 3399.734528 4485.973829 4056.448014 15598.93844 4593.512952 6056.85797 0.732811832 0.703134635 0.700323575 0.702911042 0.561303327 0.740643722 0.669728106 2.575417571 0.758398657 1 12.56435387 -4.258943647 24.99541285 0.797217697 2.575418198 0.953043141 0.122073523 45.89978672 459670.2086 0.02274772 0.206309577 5.51E-05 4.258943647 1.778200501 KADTTT(ph)PTTSAITASR ddPTM_HeLa_CUDC101_4h_R1 1 KADTTTPTTSAITASR 16 1 Q15059;Q15059-2 Q15059 BRD3 Bromodomain-containing protein 3 1 0 KADT(0.045)T(0.178)T(0.719)PT(0.045)T(0.011)S(0.003)AITASR 92.439 0.002468 0 1680.3 1339.9 1660.5 1542.5 1734.4 1874.3 1519.2 594.99 1685.5 1423.6 TRUE FALSE FALSE 1483.337781 1381.180731 1750.271653 1605.409817 1606.456767 1838.55085 1577.796053 662.7212566 1616.022977 1415.132364 1.0481972 0.976008157 1.236825401 1.134459121 1.135198946 1.299207691 1.114945918 0.468310438 1.141958885 1 10.46672129 -4.25894247 24.59045846 1.072319748 0.468310166 0.770033622 0.103975923 75.02419157 738806.8011 0.015950941 0.143750759 5.51E-05 4.25894247 -0.604009582 GLLAQGLRPESPPPAGPLLNGAPAGES(ph)PQPK ddPTM_HeLa_CUDC101_4h_R1 2 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 GLLAQGLRPES(0.002)PPPAGPLLNGAPAGES(0.998)PQPK;GLLAQGLRPESPPPAGPLLNGAPAGES(1)PQPK ; 128.97 6.44E-15 2248500000 3181.7 2975.1 2636.9 2722.15 2945.03 2865.5 2711.09 3141.5 2756.16 2957.24 TRUE FALSE FALSE 2808.745949 3066.759305 2779.45879 2833.171043 2727.781004 2810.845362 2815.657649 3499.115662 2642.549918 2939.650205 0.955469445 1.043239532 0.945506641 0.963778288 0.927927071 0.956183616 0.957820643 1.190317017 0.898933456 1 11.52142878 -4.258897387 24.9930017 0.973640874 1.190317093 0.75386494 0.038708876 75.50476159 742322.744 0.004441225 0.04081199 5.51E-05 4.258897387 0.216676219 SPSAPAATSSASSSTSSYK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 SPSAPAATSSASSSTSSYKR 20 1 A0A087X0S7;A0A0C4DH00;A0A087WTU1;A0A0B4J2G4;Q15345-3;Q15345 A0A087X0S7 LRRC41 Leucine-rich repeat-containing protein 41 0 1 SPSAPAATSSASSSTSSYK(1)R 163.34 7.90E-06 3195600 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 RDPSSNDINGGMEPTPSTVSTPS(ph)PSADLLGLR ddPTM_HeLa_CUDC101_4h_R1 1 RDPSSNDINGGMEPTPSTVSTPSPSADLLGLR 32 1 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 1 0 RDPSSNDINGGMEPTPS(0.142)T(0.04)VS(0.04)T(0.252)PS(0.428)PS(0.097)ADLLGLR 160.22 6.33E-18 49189000 687.8 659.65 688.56 654.96 790.86 602.65 652.92 1095.2 866.79 862.72 TRUE FALSE FALSE 607.1771266 679.9730346 725.7856364 681.6720998 732.5198334 591.1554553 678.1033431 1219.873141 831.0605493 857.5885031 0.708005208 0.792889634 0.846309895 0.794870847 0.854162376 0.689322972 0.790709461 1.422445773 0.969066803 1 9.744141755 -4.25888128 24.88324468 0.83377408 1.422445996 0.783039783 0.093931631 96.41330249 937775.0892 0.016347244 0.149014272 5.51E-05 4.25888128 0.588671916 LYMRQT(ph)IIK ddPTM_HeLa_CUDC101_4h_R1 1 LYMRQTIIK 9 1 Q8IWT6 Q8IWT6 LRRC8A Volume-regulated anion channel subunit LRRC8A 1 0 LY(0.001)MRQT(0.999)IIK 76.064 0.039314 248990000 1246 1353.7 1358.1 1603.3 1193.3 1232.6 1298.4 827.45 1496.4 1488.9 TRUE FALSE FALSE 1099.945769 1395.405892 1431.522994 1668.689504 1105.272636 1209.090209 1348.479723 921.6435633 1434.717759 1480.043957 0.743184528 0.942813817 0.96721654 1.127459422 0.746783656 0.816928581 0.911107888 0.622713643 0.9693751 1 10.53142431 -4.258860757 24.02132366 0.891924222 0.622713489 0.35526212 0.114278682 142.1704437 1324255.049 0.017896811 0.16170205 5.51E-05 4.258860757 -0.269210734 GSGS(ph)QSSVPSVDQFTGVGIR ddPTM_HeLa_CUDC101_4h_R1 2 GSGSQSSVPSVDQFTGVGIR 20 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 GS(0.014)GS(0.985)QS(0.001)SVPSVDQFTGVGIR;GS(0.043)GS(0.714)QS(0.216)S(0.028)VPSVDQFTGVGIR ; 194.1 3.77E-17 47856800 1854.57 1590.87 1525.83 1563.52 1730.61 2279.45 2396.54 14558.5 674.69 1630.06 TRUE FALSE FALSE 1637.180116 1639.882819 1608.320985 1627.287104 1602.946348 2235.973289 2488.975351 16215.78079 646.8789926 1620.364331 1.01037778 1.012045741 0.992567508 1.004272356 0.989250576 1.379920088 1.536059085 10.00749059 0.399218238 1 10.66210252 -4.258857053 4.513667343 1.034187498 10.61890196 0.992726135 0.230780948 0.006871859 0.353733023 0.019633971 0.209017337 5.51E-05 4.258857053 9.58471446 up SSEGGVGVGPGGGDEPPT(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 SSEGGVGVGPGGGDEPPTSPR 21 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 SSEGGVGVGPGGGDEPPT(0.954)S(0.046)PR 99.371 0.0012355 8334800 1028 1001 983.1 1111.3 928.59 1186 1024.2 1377.9 1128.5 1336.8 TRUE FALSE FALSE 907.4993983 1031.839624 1036.24936 1156.623617 860.0897657 1163.379026 1063.703737 1534.754566 1081.982752 1328.848654 0.682921562 0.776491454 0.779809918 0.870395296 0.647244337 0.875478951 0.800470192 1.154950612 0.81422572 1 10.37596109 -4.258821888 24.56495785 0.824861306 1.154950764 0.536553633 0.095958871 159.9400965 1500911.24 0.017774618 0.161916917 5.51E-05 4.258821888 0.330089458 ELFQT(ph)PCTDNPTTDEK ddPTM_HeLa_CUDC101_4h_R1 1 ELFQTPCTDNPTTDEK 16 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(0.794)PCT(0.179)DNPT(0.022)T(0.005)DEK 114.21 0.0055056 18534000 3238.3 3044.8 2778.9 2595.8 3025.5 3125.3 2632 754.92 2871.4 2010.1 TRUE FALSE FALSE 2858.711383 3138.606679 2929.13574 2701.667944 2802.314893 3065.69011 2733.517122 840.8570413 2753.039677 1998.143836 1.430683483 1.570761135 1.465928372 1.352088821 1.402459043 1.534268982 1.368028203 0.420819075 1.377798548 1 10.96444472 -4.258795848 24.40865357 1.30264022 0.42081863 0.73323183 0.168084287 100.0952466 924137.2428 0.032121752 0.293029076 5.51E-05 4.258795848 -0.88182159 AGPDLPSLPSHALEDEGWAAAAPS(ph)PGSAR ddPTM_HeLa_CUDC101_4h_R1 4 AGPDLPSLPSHALEDEGWAAAAPSPGSAR 29 0 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 AGPDLPSLPSHALEDEGWAAAAPS(0.947)PGS(0.053)AR;AGPDLPSLPSHALEDEGWAAAAPS(0.967)PGS(0.033)AR;AGPDLPSLPSHALEDEGWAAAAPS(0.841)PGS(0.159)AR;AGPDLPSLPSHALEDEGWAAAAPS(0.956)PGS(0.044)AR ;;; 211.8 2.41E-35 538649000 10099.2 8357.9 7444.9 7176.7 10720.1 8772 8520.8 9066.6 9291.1 9484.6 TRUE FALSE FALSE 8915.387085 8615.396992 7847.393814 7469.396846 9929.29958 8604.688715 8849.45011 10098.7051 8908.116925 9428.185177 0.945610095 0.913791661 0.832333441 0.792241211 1.053150675 0.912655888 0.938616493 1.071118662 0.944838986 1 13.20276438 -4.258794894 23.79768005 0.94755871 1.071118747 0.215440328 0.0733142 170.6563125 1535550.801 0.010862077 0.098043772 5.51E-05 4.258794894 0.123560036 FYEAFS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 FYEAFSK 7 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 0 FYEAFS(1)K 89.886 0.033559 22330000 4291.8 4231.8 3875.1 3990.6 4476.5 4158.4 3942.1 3763.6 5016 4353.6 TRUE FALSE FALSE 3788.72171 4362.176742 4084.599628 4153.353917 4146.277513 4079.085448 4094.148118 4192.033011 4809.238357 4327.704594 0.875457561 1.007965458 0.943825887 0.959712898 0.958077758 0.942551729 0.946032251 0.968650452 1.111267706 1 12.07938631 -4.258761615 21.07110534 0.947414463 0.9686505 0 0.06225812 130.1944904 1023836.706 0.006476832 0.058087664 5.51E-05 4.258761615 0.021236038 RSS(ph)DGS(ph)LSHEEDLAK ddPTM_HeLa_CUDC101_4h_R1 2 RSSDGSLSHEEDLAK 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 2 0 RS(0.428)S(0.618)DGS(0.892)LS(0.063)HEEDLAK;RS(0.299)S(0.777)DGS(0.887)LS(0.037)HEEDLAK ; 73.783 0.01703 110018800 11078 8743.3 8818.6 9099.3 10837.4 9063.1 9083.8 6058.1 9504.5 8651 TRUE FALSE FALSE 9779.453633 9012.67071 9295.360191 9470.408785 10037.94659 8890.236468 9434.165209 6747.729616 9112.720487 8599.543467 1.13720614 1.048040602 1.080913217 1.101268785 1.167265057 1.033803306 1.097054192 0.784661377 1.059674914 1 13.07004436 -4.25875808 24.93525102 1.074767285 0.784661269 0.781876195 0.046799092 104.8686746 975187.9181 0.008109992 0.074495249 5.51E-05 4.25875808 -0.290106015 NAVALSAS(ph)PQLK ddPTM_HeLa_CUDC101_4h_R1 2 NAVALSASPQLK 12 0 A0A2R8YD63;Q92547 A0A2R8YD63 TOPBP1 DNA topoisomerase 2-binding protein 1 1 0 NAVALS(0.225)AS(0.775)PQLK;NAVALS(0.065)AS(0.935)PQLK ; 139.77 0.0012561 26290000 4345.1 4633.2 4500.1 3945.5 4695.2 4815.7 4860.5 14128.1 4325.6 4694.6 TRUE FALSE FALSE 3835.773965 4775.9434 4743.389018 4106.414544 4348.84445 4723.848546 5047.971113 15736.3858 4147.296937 4666.67631 0.821949865 1.023414328 1.016438403 0.879944155 0.931893314 1.012251168 1.08170586 3.372075702 0.88870465 1 12.18817969 -4.258728734 4.411425362 0.935521109 3.548755105 0.991914992 0.06537441 0.015447184 0.728995035 0.011574591 0.125863649 5.51E-05 4.258728734 2.613233996 up MEEES(ph)QSQGRDLTLEENQVK ddPTM_HeLa_CUDC101_4h_R1 1 MEEESQSQGRDLTLEENQVK 20 1 Q14683;G8JLG1 Q14683 SMC1A Structural maintenance of chromosomes protein 1A;Structural maintenance of chromosomes protein 1 0 MEEES(0.547)QS(0.452)QGRDLTLEENQVK 53.327 0.025569 19683000 882.14 781.49 895.3 607.68 717.59 1038.9 1067.9 4920.9 629.87 933.24 TRUE FALSE FALSE 778.7368864 805.5667806 943.7026261 632.463817 664.6548153 1019.084713 1109.089261 5481.075365 603.906492 927.689047 0.839437405 0.86835862 1.017261796 0.68176273 0.716462933 1.098519721 1.19553989 5.908310961 0.650979435 1 9.857497498 -4.258726004 4.467951481 0.908426113 6.25890472 0.990472694 0.147723669 0.012048891 0.596577334 0.018875598 0.202989992 5.51E-05 4.258726004 5.350478608 up EGRGES(ph)ENAGTNQETR ddPTM_HeLa_CUDC101_4h_R1 3 EGRGESENAGTNQETR 16 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 0 EGRGES(1)ENAGTNQETR;EGRGES(0.812)ENAGT(0.188)NQETR;EGRGES(0.994)ENAGT(0.005)NQET(0.001)R ;; 140.27 0.00018533 82348000 4611.56 4254.41 4301.73 4007.8 5106.11 4464.14 4325.77 4853.94 4640.37 5183.69 TRUE FALSE FALSE 4070.999927 4385.483329 4534.294536 4171.255407 4729.442438 4378.993967 4492.616398 5406.492909 4449.091985 5152.857181 0.790047111 0.851077989 0.879957347 0.8095034 0.917829133 0.849818618 0.871868992 1.049222348 0.863422336 1 12.33115689 -4.258649713 23.894314 0.88448668 1.049222462 0.458057957 0.056513552 148.7365363 1273833.714 0.011193284 0.102990252 5.51E-05 4.258649713 0.164735782 ASESSKPWPDATYGTGS(ph)ASR ddPTM_HeLa_CUDC101_4h_R1 2 ASESSKPWPDATYGTGSASR 20 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 ASESSKPWPDATYGT(0.004)GS(0.935)AS(0.061)R;ASESSKPWPDAT(0.001)YGT(0.088)GS(0.857)AS(0.054)R ; 130.14 9.85E-06 121471000 6591.6 5682.4 5098.7 5943.7 5957 6255.3 5883.9 3457 6363.7 6204.8 TRUE FALSE FALSE 5818.94264 5857.468009 5374.351145 6186.109777 5517.563978 6135.990575 6110.843994 3850.530906 6101.385592 6167.893574 0.943424618 0.949670733 0.871343041 1.002953391 0.894562124 0.99482757 0.990750557 0.624286211 0.989217067 1 12.59056216 -4.258636916 24.99700221 0.963455373 0.624286089 0.84100213 0.043715813 73.4246002 654886.1357 0.006029075 0.056121412 5.51E-05 4.258636916 -0.339169284 ETSVSKEDT(ph)DHEEKASNEDVTK ddPTM_HeLa_CUDC101_4h_R1 2 ETSVSKEDTDHEEKASNEDVTK 22 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 ET(0.002)S(0.002)VS(0.002)KEDT(0.786)DHEEKAS(0.202)NEDVT(0.007)K;ETSVS(0.008)KEDT(0.973)DHEEKAS(0.019)NEDVTK ; 80.733 0.0026392 40202000 3528.3 3669.7 3649.8 3098.4 3696.7 3663.8 3318.7 3572.3 3217.6 3768 TRUE FALSE FALSE 3114.718023 3782.759107 3847.119228 3224.766144 3424.001806 3593.919119 3446.703371 3978.956192 3084.969166 3745.587768 0.831569894 1.009924034 1.02710695 0.860950629 0.914142724 0.959507383 0.920203606 1.062304887 0.82362752 1 11.87097641 -4.258633401 23.5957283 0.930256595 1.06230499 0.254571836 0.069079306 144.5017497 1214970.251 0.010256125 0.093958886 5.51E-05 4.258633401 0.132048395 VPPAPVPCPPPS(ph)PGPSAVPSSPK ddPTM_HeLa_CUDC101_4h_R1 1 VPPAPVPCPPPSPGPSAVPSSPK 23 0 O95817 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 VPPAPVPCPPPS(0.993)PGPS(0.005)AVPS(0.001)SPK 79.942 0.00040342 12965000 1438.9 1249.7 1527.2 1165.8 1659.5 1350.7 1271.7 1569.6 1217.5 1399.4 TRUE FALSE FALSE 1270.234323 1288.201776 1609.765052 1213.346363 1537.081991 1324.937648 1320.749895 1748.276919 1167.314135 1391.076307 0.913130586 0.92604681 1.157208303 0.872235662 1.104958789 0.952455046 0.949444605 1.256780028 0.839144574 1 10.44198584 -4.258616882 24.74010116 0.972271712 1.256780146 0.462583718 0.093195763 136.782049 1198862.978 0.010824876 0.10100223 5.51E-05 4.258616882 0.284508435 SAVCIADPLPTPS(ph)QEKSQTELPDEK ddPTM_HeLa_CUDC101_4h_R1 1 SAVCIADPLPTPSQEKSQTELPDEK 25 1 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 0 SAVCIADPLPT(0.203)PS(0.792)QEKS(0.004)QT(0.001)ELPDEK 86.761 1.70E-05 6703500 568.99 756.52 704.33 706 1054 844.02 1087.9 6959.3 1094.4 668.21 TRUE FALSE FALSE 502.2938547 779.8274845 742.4082103 734.7937316 976.2485199 827.9217247 1129.860667 7751.518582 1049.288369 664.2354572 0.756198498 1.174022669 1.117688317 1.106224794 1.469732622 1.246428079 1.700994211 11.66983559 1.579693401 1 9.375550926 -4.258608916 4.295947379 1.007460484 12.49898494 0.992743325 0.267532876 0.011712565 0.50070229 0.036882104 0.411323386 5.51E-05 4.258608916 11.49152446 up SEALSS(ph)VLDQEEAMEIK ddPTM_HeLa_CUDC101_4h_R1 2 SEALSSVLDQEEAMEIK 17 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SEALS(0.104)S(0.896)VLDQEEAMEIK;S(0.001)EALS(0.055)S(0.944)VLDQEEAMEIK ; 161.08 3.93E-05 6216200 4950.6 3893.57 3792.88 3677.85 3827.51 4489.1 4322.63 6235.8 4768.46 4686 TRUE FALSE FALSE 4370.298173 4013.526277 3997.934566 3827.84862 3545.162213 4403.477897 4489.355287 6945.658266 4571.90206 4658.127464 0.938209228 0.861617959 0.858270753 0.821756951 0.761070246 0.945332203 0.963768236 1.491083771 0.981489256 1 12.1855344 -4.258596035 4.326148648 0.928035063 1.534092456 0.843451962 0.075433149 0.074897191 3.285754999 0.012583775 0.139455875 5.51E-05 4.258596035 0.606057393 TQDPSSPGTT(ph)PPQAR ddPTM_HeLa_CUDC101_4h_R1 2 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 TQDPS(0.012)S(0.04)PGT(0.218)T(0.73)PPQAR;TQDPS(0.185)S(0.185)PGT(0.143)T(0.487)PPQAR ; 197.73 1.28E-15 220962000 13650.3 11505 13166.7 11629.6 13241.7 12738.2 12079.7 12786.9 12387.3 12783.5 TRUE FALSE FALSE 12050.23253 11859.45541 13878.53163 12103.90536 12264.88617 12495.24006 12545.61808 14242.50901 11876.69025 12707.46317 0.948279949 0.933266951 1.092155959 0.952503674 0.965171884 0.983299333 0.987263776 1.120798763 0.934623228 1 13.63338843 -4.258571991 4.375284604 0.978577496 1.131353926 0.492381267 0.04375458 0.131709103 6.025805709 0.005682918 0.062354254 5.51E-05 4.258571991 0.15277643 (ac)S(ph)ETAPAETATPAPVEKS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 2 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 2 0 S(0.913)ET(0.083)APAET(0.003)AT(0.001)PAPVEKS(1)PAK;S(0.891)ET(0.072)APAET(0.001)AT(0.036)PAPVEKS(1)PAK ; 69.47 0.0026152 28621000 8862.7 7564 10508.5 9276.4 8710.7 8082.3 7838.4 16083.7 7894.8 10065.3 TRUE FALSE FALSE 7823.827741 7797.037874 11076.6213 9654.731688 8068.129015 7928.143594 8140.729714 17914.6034 7569.373002 10005.43115 0.781958081 0.779280549 1.107060869 0.964949091 0.806374947 0.792384004 0.813631076 1.790487899 0.75652642 1 13.28849572 -4.258543577 24.99287449 0.888605603 1.790488226 0.856058688 0.11330137 79.11436478 682777.8861 0.016722954 0.156522935 5.51E-05 4.258543577 0.901882623 RTPHVQAVQGPLGS(ph)PPKR ddPTM_HeLa_CUDC101_4h_R1 2 RTPHVQAVQGPLGSPPKR 18 2 Q15149 Q15149 PLEC Plectin 1 0 RTPHVQAVQGPLGS(1)PPKR;RTPHVQAVQGPLGS(1)PPKR ; 59.547 0.01791 157577000 4210.9 3561.2 3660 3554.5 4259.2 3832.3 3651.2 3883.6 4407.6 4021 TRUE FALSE FALSE 3717.304685 3670.916351 3857.870671 3699.467874 3945.007302 3759.205263 3792.028007 4325.693326 4225.916862 3997.082913 0.930004397 0.91839885 0.96517154 0.92554194 0.986971596 0.940487186 0.948698861 1.082212558 1.057250238 1 11.96473178 -4.258540664 24.776959 0.958874336 1.082212609 0.434348032 0.040277369 136.945105 1170477.816 0.004448594 0.041729374 5.51E-05 4.258540664 0.123338274 SLPTPAVLLS(ph)PTKEPPPLLAKPK ddPTM_HeLa_CUDC101_4h_R1 2 SLPTPAVLLSPTKEPPPLLAKPK 23 2 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 SLPT(0.003)PAVLLS(0.862)PT(0.135)KEPPPLLAKPK;SLPT(0.002)PAVLLS(0.499)PT(0.499)KEPPPLLAKPK ; 70.987 0.0016106 1035280000 7598.1 8291 6411 6752.7 7996.5 7194.1 6814.7 7595.4 7946.1 7506.7 TRUE FALSE FALSE 6707.462236 8546.435883 6757.598052 7028.104294 7406.614126 7056.884529 7077.545262 8460.029634 7618.558395 7462.049815 0.898876636 1.145320133 0.905595409 0.941846338 0.992570984 0.945703219 0.948471993 1.133740707 1.020973939 1 12.86535628 -4.25852768 24.46463012 0.962488995 1.133740791 0.295165549 0.06880951 169.7879298 1426482.494 0.00917794 0.08521298 5.51E-05 4.25852768 0.171251796 KSLDSDES(ph)EDEEDDYQQK ddPTM_HeLa_CUDC101_4h_R1 2 KSLDSDESEDEEDDYQQK 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 1 0 KSLDS(0.002)DES(0.998)EDEEDDYQQK;KSLDSDES(1)EDEEDDYQQK ; 136.02 3.99E-05 33552000 9577.1 8729.5 8722.3 8463.7 10150.6 9601.3 10621 19959.5 10652.9 11478.9 TRUE FALSE FALSE 8454.486856 8998.445548 9193.853922 8808.886269 9401.810461 9418.171199 11030.65553 22231.6088 10213.78295 11410.62299 0.740931224 0.788602476 0.805727604 0.77198995 0.823952423 0.825386239 0.96670055 1.948325592 0.895111771 1 13.47808994 -4.25850595 3.601194779 0.850191722 2.077386003 0.956932425 0.070549449 0.059139539 1.365701619 0.014554812 0.195611778 5.51E-05 4.25850595 1.227194281 S(ph)FQDYTGQK ddPTM_HeLa_CUDC101_4h_R1 2 SFQDYTGQK 9 0 A0A087WXU5;A0A087WYV3;A0A0D9SEW3;A0A087WXF8;Q9NP64-2;Q9NP64-3;Q9NP64 A0A087WXU5 ZCCHC17 Nucleolar protein of 40 kDa 1 0 S(0.999)FQDYT(0.001)GQK;S(0.984)FQDY(0.002)T(0.014)GQK ; 108.32 0.011055 45169000 2726.5 2552.1 1955.83 2802.28 2766.6 2471.4 2391.46 4116.2 2794.6 3054 TRUE FALSE FALSE 2406.903803 2630.727176 2061.568086 2916.569091 2562.51343 2424.262163 2483.699413 4584.77157 2679.405405 3035.834672 0.792830988 0.866558117 0.679077851 0.960714072 0.844088597 0.798548809 0.818127362 1.510217803 0.882592662 1 11.56787751 -4.258497288 24.99098446 0.872021491 1.510218036 0.834674269 0.087731368 98.57746768 837301.4856 0.014511869 0.136233267 5.51E-05 4.258497288 0.638196545 TEDNGPKEDS(ph)S(ph)LPT(ph)FKT(ph)AK ddPTM_HeLa_CUDC101_4h_R1 1 TEDNGPKEDSSLPTFKTAK 19 2 Q6PIW4-2;Q6PIW4 Q6PIW4-2 FIGNL1 Fidgetin-like protein 1 4 0 T(0.013)EDNGPKEDS(0.992)S(0.996)LPT(1)FKT(1)AK 42.059 0.040047 8810700 726.68 611.66 616.2 798.82 664.36 753.56 806.83 1033.6 982.6 821.78 TRUE FALSE FALSE 641.499672 630.5045196 649.5136359 831.3993324 615.3514864 739.1870985 837.9497034 1151.260846 942.0968121 816.892016 0.78529311 0.771833372 0.79510342 1.01775916 0.753283756 0.904877369 1.02577781 1.409318274 1.153269702 1 9.674001573 -4.25849428 2.034613088 0.878243521 1.566012111 0.605244074 0.123658786 0.313982269 1.375814194 0.015076877 0.399800133 5.51E-05 4.25849428 0.68776859 PCS(ph)EETPAIS(ph)PSKR ddPTM_HeLa_CUDC101_4h_R1 1 PCSEETPAISPSKR 14 1 P33316-2;H0YNJ9 P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 2 0 PCS(0.975)EET(0.025)PAIS(0.856)PS(0.144)KR 79.676 0.014102 29507000 4266.1 4186.7 4098.9 4596.2 3902.5 4223.3 3768.5 5819.4 4157.6 4375.2 TRUE FALSE FALSE 3766.034225 4315.687265 4320.498932 4783.652902 3614.62035 4142.747589 3913.852307 6481.856973 3986.221968 4349.176116 0.865918998 0.992299955 0.993406295 1.099898642 0.831104617 0.952536177 0.899906604 1.490364336 0.916546459 1 12.08652642 -4.258481182 24.95333995 0.946054072 1.490364539 0.830319265 0.073236982 84.92283786 716312.491 0.010772005 0.101671816 5.51E-05 4.258481182 0.544310467 SELPDS(ph)PEPVTEINEDSVLIPPTAQPEK ddPTM_HeLa_CUDC101_4h_R1 2 SELPDSPEPVTEINEDSVLIPPTAQPEK 28 0 Q86YC2 Q86YC2 PALB2 Partner and localizer of BRCA2 1 0 S(0.055)ELPDS(0.944)PEPVT(0.001)EINEDSVLIPPTAQPEK;S(0.056)ELPDS(0.91)PEPVT(0.034)EINEDSVLIPPTAQPEK ; 91.603 6.93E-06 0 3530.8 3200.5 3148.8 2998.4 3491.7 3466.5 3093.6 3977.2 3151.3 3560.9 TRUE FALSE FALSE 3116.924976 3299.103611 3319.033653 3120.687712 3234.124247 3400.382288 3212.921188 4429.948372 3021.40208 3539.719608 0.880557027 0.932023995 0.937654396 0.881620031 0.913666789 0.960636057 0.907676749 1.251496972 0.853571021 1 11.78941937 -4.258479588 24.98351089 0.934591028 1.251497088 0.840976414 0.042924001 90.33125416 762443.0878 0.006567541 0.061732269 5.51E-05 4.258479588 0.31690606 GISSS(ph)NEGVEEPSK ddPTM_HeLa_CUDC101_4h_R1 1 GISSSNEGVEEPSK 14 0 Q9NXV6 Q9NXV6 CDKN2AIP CDKN2A-interacting protein 1 0 GIS(0.02)S(0.129)S(0.851)NEGVEEPSK 125.28 0.0011437 3723400 1783.5 1733.9 1333.9 1512.5 1705.8 1567.6 1492 2549.6 1587.5 1829.1 TRUE FALSE FALSE 1574.440834 1787.319404 1406.014669 1574.186288 1579.966532 1537.700642 1549.54694 2839.836158 1522.062578 1818.220432 0.865924068 0.983004796 0.773291645 0.865784071 0.868963138 0.845717392 0.852232718 1.561876717 0.83711664 1 10.8283114 -4.258457292 24.98620995 0.908172922 1.561876956 0.893231379 0.070301622 73.7653192 618029.812 0.011011723 0.103643157 5.51E-05 4.258457292 0.653704034 SPLS(ph)PTETFSWPDVR ddPTM_HeLa_CUDC101_4h_R1 2 SPLSPTETFSWPDVR 15 0 A1L390-3;A1L390;G3V311;A1L390-2 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 SPLS(0.799)PT(0.193)ET(0.008)FSWPDVR;S(0.017)PLS(0.959)PT(0.024)ETFSWPDVR ; 148.18 0.00026109 25428000 1730.65 1591.29 1299.98 1534.09 1654.42 1496.08 1450.92 1764.65 1642.87 1595.62 TRUE FALSE FALSE 1527.78583 1640.315759 1370.260851 1596.656821 1532.376733 1467.544767 1506.88247 1965.530623 1575.150203 1586.129181 0.96321652 1.034162777 0.863902428 1.006637316 0.966110926 0.925236597 0.950037669 1.239199585 0.993078131 1 10.63129456 -4.258450476 24.97482813 0.972870174 1.239199683 0.761078044 0.045655806 97.72288753 816514.3904 0.00593576 0.056278303 5.52E-05 4.258450476 0.266329509 ITENT(ph)SQYQGVVVY(ph)S(ph)MADIPLGFGVAAK ddPTM_HeLa_CUDC101_4h_R1 1 ITENTSQYQGVVVYSMADIPLGFGVAAK 28 0 Q9Y221 Q9Y221 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog 3 0 IT(0.257)ENT(0.276)S(0.276)QY(0.257)QGVVVY(0.942)S(0.993)MADIPLGFGVAAK 42.106 0.0027614 0 235.57 173.52 96.27 296.09 353.68 464.72 280.19 128.1 325.79 354.25 TRUE FALSE FALSE 207.9568417 178.8659455 101.4746474 308.16583 327.589731 455.8562403 290.9970222 142.6823862 312.3607983 352.1429052 0.590546731 0.507935679 0.28816326 0.875115828 0.930274971 1.294520587 0.826360599 0.405183191 0.887028515 1 8.460017206 -4.258437026 23.39849555 0.794882742 0.405182857 0.165376977 0.265860422 189.4918404 1476578.739 0.041075758 0.381502921 5.52E-05 4.258437026 -0.389699885 SELSQDAEPAGS(ph)QETK ddPTM_HeLa_CUDC101_4h_R1 2 SELSQDAEPAGSQETK 16 0 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 SELSQDAEPAGS(0.999)QET(0.001)K;SELSQDAEPAGS(0.999)QET(0.001)K ; 256.84 9.72E-70 117532000 12289.6 10603.6 10696 11313.3 11608.6 11867.6 13281.7 38381 11432.4 12083 TRUE FALSE FALSE 10849.03172 10930.28435 11274.25811 11774.70527 10752.25671 11641.2453 13793.97962 42750.1379 10961.15163 12011.12978 0.90324823 0.910013009 0.938650928 0.980316214 0.895191119 0.969204856 1.148433151 3.55921039 0.912582899 1 13.55208424 -4.258419618 4.07101017 0.949770106 3.79156211 0.997971809 0.035235257 0.009199139 0.323502423 0.006524006 0.076786025 5.52E-05 4.258419618 2.841792004 up GGVTGSPEASISGS(ph)KGDLK ddPTM_HeLa_CUDC101_4h_R1 2 GGVTGSPEASISGSKGDLK 19 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GGVTGSPEAS(0.116)IS(0.164)GS(0.719)KGDLK;GGVTGSPEAS(0.04)IS(0.152)GS(0.808)KGDLK ; 74.364 0.0059857 146729000 6425.6 5123.8 5451.9 5308.9 5511.7 5998.4 5781.6 6105.1 4993.8 6067.8 TRUE FALSE FALSE 5672.400909 5281.658205 5746.646205 5525.419889 5105.112872 5883.990514 6004.598249 6800.079906 4787.95345 6031.708456 0.94043022 0.875648789 0.952739385 0.916062162 0.846379249 0.975509768 0.995505385 1.127388692 0.793797228 1 12.55835098 -4.258412479 2.078663813 0.950374522 1.177621632 0.421257948 0.067195435 0.461199605 2.138539249 0.007589364 0.196946768 5.52E-05 4.258412479 0.227247111 ESSTSEGADQKMS(ph)S(ph)PEDDSDTKR ddPTM_HeLa_CUDC101_4h_R1 4 ESSTSEGADQKMSSPEDDSDTKR 23 2 Q15424-2;Q15424;Q15424-4;Q15424-3 Q15424-2 SAFB Scaffold attachment factor B1 2 0 ESS(0.001)T(0.001)S(0.004)EGADQKMS(0.995)S(0.996)PEDDS(0.002)DTKR;ES(0.001)S(0.017)T(0.015)S(0.04)EGADQKMS(0.967)S(0.96)PEDDS(0.001)DTKR;ES(0.001)S(0.02)T(0.019)S(0.019)EGADQKMS(0.961)S(0.961)PEDDS(0.01)DT(0.01)KR;ES(0.003)S(0.025)T(0.023)S(0.026)EGADQKMS(0.933)S(0.933)PEDDS(0.05)DT(0.007)KR ;;; 77.469 0.00082144 120173000 17766.2 15121.6 15645 15358.4 16090.3 15768.7 15031.8 17802.8 16314.9 16626.2 TRUE FALSE FALSE 15683.67297 15587.47857 16490.81602 15984.78194 14903.35063 15467.93832 15611.58156 19829.39879 15642.39292 16527.30662 0.948955164 0.943134833 0.997792102 0.967174041 0.901741038 0.935901939 0.944593207 1.199796146 0.946457476 1 14.01256401 -4.258403406 24.88300429 0.964965805 1.199796238 0.860473257 0.029398047 84.60080723 693355.4974 0.004721344 0.044180686 5.52E-05 4.258403406 0.234830433 EDEGEPGDEGQLEDEGS(ph)QEKQGR ddPTM_HeLa_CUDC101_4h_R1 1 EDEGEPGDEGQLEDEGSQEKQGR 23 1 Q969E4 Q969E4 TCEAL3 Transcription elongation factor A protein-like 3 1 0 EDEGEPGDEGQLEDEGS(1)QEKQGR 79.993 0.00034912 10680000 1209.9 1081.7 1035.4 1093.1 1297.9 1192.2 1385.9 2588 1540.7 1456 TRUE FALSE FALSE 1068.077356 1115.025895 1091.376856 1137.681343 1202.156503 1169.460771 1439.354627 2882.607459 1477.191694 1447.339647 0.737959026 0.770396843 0.754057182 0.786050009 0.830597369 0.808007142 0.994482967 1.991659293 1.02062546 1 10.4991878 -4.258283369 3.282060001 0.844734538 2.15481157 0.932468712 0.09252442 0.069679849 1.193046341 0.015378192 0.231428649 5.52E-05 4.258283369 1.310077032 ASEENLLSSSSVPSADRDS(ph)SPTTNSK ddPTM_HeLa_CUDC101_4h_R1 4 ASEENLLSSSSVPSADRDSSPTTNSK 26 1 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 ASEENLLSSSSVPS(0.004)ADRDS(0.436)S(0.436)PT(0.1)T(0.023)NSK;ASEENLLSSSSVPS(0.016)ADRDS(0.484)S(0.484)PT(0.012)T(0.003)NSK;ASEENLLSSSSVPS(0.048)ADRDS(0.471)S(0.471)PT(0.01)T(0.001)NSK;ASEENLLSSSSVPS(0.108)ADRDS(0.398)S(0.398)PT(0.079)T(0.016)NS(0.001)K ;;; 129.66 4.88E-11 375707000 8894.2 8061.6 8009.9 7045.3 9358.2 8206.1 7897.5 8413 9200.1 8930.8 TRUE FALSE FALSE 7851.635359 8309.968341 8442.939423 7332.637786 8667.86423 8049.582315 8202.10922 9370.701913 8820.867984 8877.679204 0.884424316 0.936051884 0.951030019 0.825963365 0.976366011 0.906721467 0.923902411 1.055535089 0.993600668 1 13.11596686 -4.258248854 24.13272995 0.934597931 1.055535162 0.350232943 0.049985805 181.556193 1373152.187 0.007493697 0.070962061 5.52E-05 4.258248854 0.120937232 ASVSPMDEPVPDS(ph)ESPIEK ddPTM_HeLa_CUDC101_4h_R1 1 ASVSPMDEPVPDSESPIEK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ASVSPMDEPVPDS(0.638)ES(0.362)PIEK 161.86 2.70E-05 5815200 2933.2 2867.9 2187.4 2354.5 2892.6 2831.1 2516.9 3223.7 2608 2891 TRUE FALSE FALSE 2589.374742 2956.2566 2305.657461 2450.526687 2679.218661 2777.101484 2613.977676 3590.672977 2500.497136 2873.804203 0.901026848 1.028691028 0.802301513 0.852711776 0.93228991 0.966350276 0.909587951 1.249449414 0.870100034 1 11.48874606 -4.258246234 24.82997294 0.93794375 1.249449541 0.677449909 0.067348298 132.811202 1032686.981 0.009501703 0.091027548 5.52E-05 4.258246234 0.311505791 AQS(ph)LEPYGTGLR ddPTM_HeLa_CUDC101_4h_R1 1 AQSLEPYGTGLR 12 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ERU2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 AQS(0.999)LEPYGT(0.001)GLR 123.68 0.002752 5372400 1126.1 818.32 1061.3 727.15 1106 937.32 942.03 1329.4 1129.3 862.78 TRUE FALSE FALSE 994.1002651 843.5314693 1118.677088 756.80632 1024.412583 919.4421827 978.3644127 1480.733522 1082.749776 857.6481462 1.159100348 0.983540247 1.304354348 0.882420516 1.194443885 1.072050568 1.14075267 1.726504662 1.262463845 1 9.744242087 -4.25824596 3.800510951 1.081449101 1.79405452 0.681605923 0.125384455 0.092376521 2.555379273 0.014530162 0.184161702 5.52E-05 4.25824596 0.71260542 WDETPASQMGGS(ph)TPVLTPGK ddPTM_HeLa_CUDC101_4h_R1 1 WDETPASQMGGSTPVLTPGK 20 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 WDETPASQMGGS(0.633)T(0.365)PVLT(0.001)PGK 79.445 0.021403 3750000 4886.5 4367.3 4526.3 4642.7 4846.6 4419.3 4325.7 4891.6 4543.5 4848.4 TRUE FALSE FALSE 4313.711877 4501.851336 4771.005469 4832.049373 4489.075974 4335.009216 4492.543698 5448.439971 4356.215007 4819.561501 0.895042397 0.934079031 0.989925218 1.002591081 0.9314283 0.899461334 0.93214781 1.130484582 0.903861276 1 12.23468618 -4.258183313 24.76456846 0.948952439 1.13048466 0.670628754 0.03919351 154.105042 1172007.991 0.006485305 0.062158307 5.52E-05 4.258183313 0.181532221 VTFSVS(ph)PIEATEK ddPTM_HeLa_CUDC101_4h_R1 1 VTFSVSPIEATEK 13 0 Q9ULD2-2;Q9ULD2;H0YC63;Q9ULD2-5 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 1 0 VTFS(0.017)VS(0.982)PIEAT(0.001)EK 131.08 0.0010622 9961800 3214.3 3115.2 3363.1 3174.8 3353.1 3183.2 3052.7 2387.8 3315.2 3279.1 TRUE FALSE FALSE 2837.524627 3211.17562 3544.919359 3304.282067 3105.748493 3122.485764 3170.443662 2659.6175 3178.546053 3259.595767 0.870514269 0.985145352 1.087533428 1.013709154 0.952801732 0.957936501 0.972649337 0.815934763 0.975135041 1 11.67047735 -4.258173095 24.2307437 0.95959516 0.815934679 0.406268895 0.054752257 211.5509477 1569258.347 0.009571308 0.091209558 5.52E-05 4.258173095 -0.143660481 MS(ph)PPPSGFGER ddPTM_HeLa_CUDC101_4h_R1 2 MSPPPSGFGER 11 0 A0A087WZ13;Q8IY67-2;E9PAU2;K7EQG2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 MS(0.993)PPPS(0.007)GFGER;MS(0.992)PPPS(0.008)GFGER ; 87.641 0.028218 59898000 7050.2 6190 5389.8 5985.4 6156.4 6177.4 6665.4 11863.9 6519.1 6344.4 TRUE FALSE FALSE 6223.786243 6380.706563 5681.188891 6229.510483 5702.254637 6059.576387 6922.486711 13214.43842 6250.379939 6306.663227 0.986858822 1.011740493 0.900823254 0.987766472 0.904163491 0.960821304 1.097646483 2.095313789 0.991075584 1 12.62266118 -4.258139813 3.60036162 0.980434145 2.226846839 0.987497149 0.037798055 0.022060665 0.508780604 0.005497366 0.074132931 5.52E-05 4.258139813 1.246412694 up EVNS(ph)QEEEEEELLRK ddPTM_HeLa_CUDC101_4h_R1 2 EVNSQEEEEEELLRK 15 1 Q96RL1-2;Q96RL1-3;Q96RL1;D6RC40;D6RCQ3;Q96RL1-5 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 EVNS(1)QEEEEEELLRK;EVNS(1)QEEEEEELLRK ; 130.95 0.00035149 37751000 3414.1 3420.3 2760.29 3226.5 3490.8 4155.4 4143.3 13943.6 4231.4 4291.1 TRUE FALSE FALSE 3013.904373 3525.675389 2909.519627 3358.090616 3233.290639 4076.142668 4303.108469 15530.88306 4056.979901 4265.576346 0.706564396 0.826541387 0.682092967 0.787253666 0.757996195 0.955590133 1.00879884 3.640981148 0.951097711 1 12.05852497 -4.258129665 4.352176879 0.839154218 3.852865843 0.985398961 0.102009729 0.0213771 0.958266375 0.017958459 0.198907624 5.52E-05 4.258129665 3.013711625 up STFS(ph)TNYR ddPTM_HeLa_CUDC101_4h_R1 2 STFSTNYR 8 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 ST(0.001)FS(0.72)T(0.279)NYR;STFS(0.978)T(0.022)NYR ; 123.86 0.0067315 128315000 4087.8 3891.4 3986.2 2995.1 4079.9 3662.6 3289.1 4533.4 3661.2 3355.3 TRUE FALSE FALSE 3608.634281 4011.289422 4201.70603 3117.253124 3778.933905 3592.742007 3415.961689 5049.463931 3510.283786 3335.342526 1.081938137 1.202661912 1.259752483 0.934612592 1.132997249 1.077173327 1.024171179 1.513926648 1.052450763 1 11.70361921 -4.258129006 24.74801267 1.066269835 1.513926842 0.657541513 0.091947734 128.5103101 960676.9373 0.013244304 0.127793588 5.52E-05 4.258129006 0.447657007 VAVNALAVGEPGTASKPAS(ph)PIGGPTQEEK ddPTM_HeLa_CUDC101_4h_R1 1 VAVNALAVGEPGTASKPASPIGGPTQEEK 29 1 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;Q96L91-4 Q96L91-3 EP400 E1A-binding protein p400 1 0 VAVNALAVGEPGT(0.087)AS(0.032)KPAS(0.676)PIGGPT(0.204)QEEK 65.377 0.00046098 23859000 694.54 689.26 574.12 802.35 778.45 726.08 688.9 708.68 744.04 833.68 TRUE FALSE FALSE 613.1270741 710.4952836 605.1586638 835.0733011 721.0252944 712.2312337 715.4711038 789.3532666 713.3703563 828.7212343 0.739847187 0.857339301 0.730231879 1.007664902 0.870045637 0.859434034 0.863343515 0.952495524 0.860808589 1 9.694743079 -4.258121102 21.49138421 0.87010238 0.95249574 0.083504121 0.085285276 124.0721626 803252.4021 0.014860538 0.13855051 5.52E-05 4.258121102 0.08239336 T(ph)T(ph)FS(ph)PPVVAATVKNQS(ph)RS(ph)PIK ddPTM_HeLa_CUDC101_4h_R1 1 TTFSPPVVAATVKNQSRSPIK 21 2 A0A1B0GV05;Q684P5-3;Q684P5-2;Q684P5 A0A1B0GV05 RAP1GAP2 Rap1 GTPase-activating protein 2 5 0 T(0.983)T(0.983)FS(0.964)PPVVAAT(0.194)VKNQS(0.977)RS(0.9)PIK 58.712 0.0016281 0 3253.2 2913.3 2817.7 3075.2 3238.3 2870.9 2604.9 1741.9 3144.6 2551.2 TRUE FALSE FALSE 2871.864828 3003.05532 2970.033385 3200.619948 2999.417061 2816.142366 2705.371866 1940.190855 3014.978257 2536.025349 1.132427493 1.184158242 1.171137105 1.262061497 1.182723612 1.110455133 1.06677635 0.765051838 1.188859669 1 11.30835345 -4.258064107 3.482845013 1.105384576 0.721993348 0.661912702 0.077400087 0.186107991 3.849846678 0.013411315 0.188153169 5.52E-05 4.258064107 -0.383391228 SPYQEFTDHLVK ddPTM_HeLa_CUDC101_4h_R1 2 SPYQEFTDHLVK 12 0 E9PQD7;P15880;H0YEN5 E9PQD7 RPS2 40S ribosomal protein S2 0 0 ; ; 87.498 0.00157 10730000 3999.2 3430.4 3613.4 3499.6 3800 3728.4 3461.7 3721.9 3661.8 3716.4 FALSE FALSE TRUE 3530.419838 3536.086558 3808.751334 3642.328815 3519.681571 3657.286982 3595.218929 4145.586052 3510.859054 3694.294688 0.9556411 0.957175011 1.030982002 0.985933479 0.952734383 0.989982471 0.973181414 1.122159005 0.950346237 1 11.85108324 -4.259817351 24.93390993 0.979805223 1.122159054 0.761087524 0.024307597 51.07525822 785058.4376 0.003405323 0.02878685 5.50E-05 4.259817351 0.142353831 GRAEGEWEDQEALDYFSDKES(ph)GK ddPTM_HeLa_CUDC101_4h_R1 1 GRAEGEWEDQEALDYFSDKESGK 23 2 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 GRAEGEWEDQEALDY(0.025)FS(0.335)DKES(0.64)GK 72.058 0.00073111 7007000 1896.3 1656.4 1470.7 1494.3 1603.1 1646.9 1467 1964.3 1966.8 1514.8 TRUE FALSE FALSE 1674.018589 1707.431721 1550.210491 1555.244013 1484.842507 1615.488126 1523.582681 2187.907972 1885.727672 1505.789902 1.111721221 1.133910991 1.029499858 1.032842637 0.986088766 1.07285095 1.011816243 1.452996842 1.252317915 1 10.55630477 -4.258026688 24.97181512 1.051120056 1.452996995 0.679610875 0.077889841 95.17619356 696403.6383 0.007489286 0.073167501 5.52E-05 4.258026688 0.401876938 NNSFT(ph)APSTVGK ddPTM_HeLa_CUDC101_4h_R1 1 NNSFTAPSTVGK 12 0 O95453;O95453-3;O95453-2;A0A494C0W0;A0A494C0K5;A0A494C0Q6;O95453-4 O95453 PARN Poly(A)-specific ribonuclease PARN 1 0 NNS(0.09)FT(0.91)APSTVGK 169.17 5.00E-06 21467000 3268.7 2260.5 2292 2245.1 2366.1 2689.4 3119.3 9079.2 2340.5 2595.5 TRUE FALSE FALSE 2885.547941 2330.143326 2415.912453 2336.664882 2191.557517 2638.104176 3239.612446 10112.73943 2244.023599 2580.061851 1.118402623 0.903134677 0.936377728 0.905662351 0.849420535 1.022496486 1.255633637 3.919572481 0.869755738 1 11.33318994 -4.2579929 3.9194717 1.012689747 4.203956586 0.988804109 0.094002804 0.019432658 0.597582866 0.014430814 0.177343712 5.52E-05 4.2579929 3.191266839 up AMS(ph)LNTLNVDAPR ddPTM_HeLa_CUDC101_4h_R1 1 AMSLNTLNVDAPR 13 0 Q6P597-2;Q6P597;Q6P597-3 Q6P597-2 KLC3 Kinesin light chain 3 1 0 AMS(0.623)LNT(0.377)LNVDAPR 146.1 0.00051846 21847000 396.95 323.13 387.34 256.72 360.04 436.62 354.31 512.57 409.64 457.59 TRUE FALSE FALSE 350.4201227 333.0852523 408.280772 267.1901512 333.4805665 428.292201 367.9758554 570.9188969 392.7544658 454.8682343 0.770377213 0.73226756 0.897580313 0.58740121 0.733136635 0.941574216 0.808972418 1.255130286 0.863446678 1 8.829304877 -4.257987554 23.98474408 0.847692443 1.255130564 0.546997489 0.116800144 138.1844352 960082.3996 0.019078358 0.183738778 5.52E-05 4.257987554 0.407438121 SASSASSLFS(ph)PSSTLFSSSR ddPTM_HeLa_CUDC101_4h_R1 1 SASSASSLFSPSSTLFSSSR 20 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 SASSASS(0.004)LFS(0.992)PS(0.002)S(0.001)TLFSSSR 207.16 1.84E-24 53225000 2836.3 2128.4 1768.1 2074.4 2456.4 2129.4 1629.6 1019.4 2273.3 2436.1 TRUE FALSE FALSE 2503.833214 2193.973481 1863.688834 2159.002998 2275.196266 2088.785243 1692.454218 1135.444375 2179.593612 2421.609969 1.033953959 0.905997873 0.769607351 0.891556868 0.939538693 0.862560557 0.698896288 0.468879956 0.900059729 1 11.2417508 -3.853723758 0.483728827 1.003190394 8.26E-34 0.718911475 0.083213721 2.154712473 0.256475815 0.018160153 1.339000337 0.000140048 3.853723758 -1.003190394 down TKPLATTQPAKT(ph)STSK ddPTM_HeLa_CUDC101_4h_R1 1 TKPLATTQPAKTSTSK 16 2 E7EVA0;P27816;P27816-6;P27816-5;P27816-4;H7C4C5;B5MEG9 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 TKPLATTQPAKT(0.455)S(0.455)T(0.076)S(0.013)K 93.51 0.018557 18811000 1882.5 1887.9 1943.3 1660 2062.8 1994.6 1796.8 908.41 1837.8 1769.8 TRUE FALSE FALSE 1661.836204 1946.063961 2048.360676 1727.701975 1910.631354 1956.556328 1866.103178 1011.819722 1762.045106 1759.273151 0.944615225 1.106174991 1.164322138 0.982054421 1.08603451 1.112139026 1.060723957 0.57513509 1.001575625 1 10.78076378 -4.257936685 24.9498047 1.016469107 0.575134919 0.785546127 0.072593831 141.044761 1004619.524 0.011889851 0.116989787 5.52E-05 4.257936685 -0.441334188 VDDSS(ph)EDKTEFTVK ddPTM_HeLa_CUDC101_4h_R1 1 VDDSSEDKTEFTVK 14 1 P49588;P49588-2 P49588 AARS "Alanine--tRNA ligase, cytoplasmic" 1 0 VDDS(0.027)S(0.972)EDKTEFTVK 112.96 0.00093618 0 1338.5 1127 936.94 1357.5 1199 986.62 1066.7 1408 1206 1154.9 TRUE FALSE FALSE 1181.603059 1161.721534 987.5938105 1412.864718 1110.552159 967.8018673 1107.842976 1568.281029 1156.28817 1148.030603 1.02924352 1.01192558 0.860250421 1.230685587 0.967354141 0.843010512 0.964994289 1.36606204 1.00719281 1 10.16494539 -4.257935262 24.70580227 1.001237851 1.366062204 0.554967711 0.10047729 164.4555434 1159432.915 0.013100739 0.128785034 5.52E-05 4.257935262 0.364824353 SKS(ph)PLPPEEEAK ddPTM_HeLa_CUDC101_4h_R1 1 SKSPLPPEEEAK 12 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.082)KS(0.918)PLPPEEEAK 114.64 0.00083501 0 2270.6 1783 1822.3 1715.5 1885.4 1510.5 1331.8 939.88 1792 2141.3 TRUE FALSE FALSE 2004.44371 1837.932117 1920.81905 1785.465505 1746.317798 1481.689729 1383.167972 1046.87214 1718.133002 2128.563452 0.941688493 0.863461277 0.902401593 0.838812441 0.820420832 0.696098454 0.649812892 0.491820969 0.807179603 1 11.05566438 -3.851448131 0.349645164 0.989109909 1.11E-16 0.815269796 0.061519793 0.839408421 0.057923076 0.008188661 0.370421686 0.000140784 3.851448131 -0.989109909 down S(ph)ESPVCSSR ddPTM_HeLa_CUDC101_4h_R1 1 SESPVCSSR 9 0 O00472;D6RC27 O00472 ELL2 RNA polymerase II elongation factor ELL2 1 0 S(0.496)ES(0.496)PVCS(0.007)SR 105.17 0.012901 36714000 2404.7 1453.7 2924.1 3254.8 2001.3 2071.4 2348.6 1094.4 2773.3 2483.3 TRUE FALSE FALSE 2122.824711 1498.486774 3082.185691 3387.544812 1853.668086 2031.891496 2439.186289 1218.982072 2658.9834 2468.529221 0.859955269 0.607036271 1.248591941 1.372292774 0.75092005 0.823118268 0.988113192 0.493809051 1.077152896 1 11.26943601 -4.257927629 24.19128776 0.944189531 0.493808784 0.295732206 0.217125691 221.4169925 1525156.01 0.029363746 0.285794824 5.52E-05 4.257927629 -0.450380747 TDSVIIADQTPT(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 2 TDSVIIADQTPTPTR 15 0 K7ELQ4;P17544-4;P17544-2;P17544;K7ESA4;P17544-5;P17544-3;P17544-1 K7ELQ4 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 TDSVIIADQTPT(0.998)PT(0.002)R;TDSVIIADQTPT(0.99)PT(0.01)R ; 190.34 1.55E-10 45434200 4303.8 3388.6 2573.78 3061.3 3376.1 4031.3 3090.5 6216.8 3649.4 3675.3 TRUE FALSE FALSE 3799.315088 3492.99875 2712.926332 3186.153046 3127.051829 3954.409669 3209.70162 6924.495383 3498.970187 3653.439152 1.039928388 0.956085103 0.742567816 0.872096924 0.855920052 1.082380055 0.878542515 1.895336174 0.957719574 1 11.83503946 -4.257860251 24.99234855 0.973175634 1.895336524 0.887733696 0.101849531 91.88020465 641553.1498 0.01546652 0.152696885 5.52E-05 4.257860251 0.92216089 EMDT(ph)ARTPLSEAEFEEIMNR ddPTM_HeLa_CUDC101_4h_R1 2 EMDTARTPLSEAEFEEIMNR 20 1 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 0 EMDT(0.87)ART(0.13)PLSEAEFEEIMNR;EMDT(0.868)ART(0.131)PLS(0.001)EAEFEEIMNR ; 117.78 4.01E-05 36755300 3613.5 3539.6 2971 3224.3 3792.6 3316.9 3168.5 3822.6 3552.7 3598.4 TRUE FALSE FALSE 3189.931008 3648.650881 3131.621247 3355.800891 3512.827454 3253.635659 3290.710106 4257.749333 3406.256202 3576.996557 0.891790349 1.02003198 0.87548903 0.938161622 0.982060619 0.909599886 0.919964572 1.190314071 0.952267118 1 11.80453301 -4.257837802 24.94422488 0.945224875 1.190314167 0.736125447 0.044360269 150.8947818 1045037.568 0.006857697 0.067894115 5.52E-05 4.257837802 0.245089292 FSVS(ph)PVVR ddPTM_HeLa_CUDC101_4h_R1 1 FSVSPVVR 8 0 P13639 P13639 EEF2 Elongation factor 2 1 0 FS(0.024)VS(0.976)PVVR 86.882 0.033446 7744900 3860.5 3653.6 2907.9 3297.1 3346 3586.4 3165.5 3596.8 4040.2 3312 TRUE FALSE FALSE 3407.978042 3766.163085 3065.10987 3431.569989 3099.172246 3517.995395 3287.594395 4006.245173 3873.661246 3292.300077 1.035135912 1.143930686 0.930993469 1.042301707 0.941339542 1.068552475 0.998570701 1.216852984 1.176582072 1 11.68488012 -4.257812056 24.73595959 1.018943833 1.216853072 0.30736261 0.076336064 174.9891581 1193249.048 0.00724941 0.071390721 5.52E-05 4.257812056 0.197909239 GLEGKS(ph)PDTGPDWLK ddPTM_HeLa_CUDC101_4h_R1 2 GLEGKSPDTGPDWLK 15 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 GLEGKS(0.978)PDT(0.022)GPDWLK;GLEGKS(0.805)PDT(0.195)GPDWLK ; 66.246 0.027339 53640000 5386 4609.5 4684.9 4901.8 5710.5 5400.5 4802.1 5895.8 5645.4 5617.9 TRUE FALSE FALSE 4754.661245 4751.513231 4938.179865 5101.716591 5289.247792 5297.49446 4987.318606 6566.95404 5412.694223 5584.484481 0.851405579 0.850841872 0.884267811 0.913551933 0.947132687 0.948609398 0.893066965 1.175928425 0.969237938 1 12.44720839 -4.257779629 24.76078501 0.919701934 1.175928537 0.73272417 0.046795948 164.2487598 1111202.843 0.008549023 0.084796213 5.52E-05 4.257779629 0.256226603 GEAAAERPGEAAVASSPS(ph)KANGQENGHVK ddPTM_HeLa_CUDC101_4h_R1 1 GEAAAERPGEAAVASSPSKANGQENGHVK 29 2 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEAAAERPGEAAVAS(0.003)S(0.09)PS(0.906)KANGQENGHVK 84.646 3.83E-07 108240000 2373.5 2175.5 2449.4 2060.1 2553.4 2581.7 2255.4 1664.3 2635.3 2413.4 TRUE FALSE FALSE 2095.281928 2242.524576 2581.821973 2144.119783 2365.040769 2532.458374 2342.391534 1853.757185 2526.671819 2399.044989 0.873381674 0.9347572 1.076187393 0.89373888 0.985825935 1.055611039 0.976384996 0.772706303 1.053199014 1 11.2282445 -4.257768054 24.63168644 0.957241783 0.772706216 0.415226387 0.069003504 243.5712838 1634081.212 0.009789284 0.096822963 5.52E-05 4.257768054 -0.184535567 EVDAT(ph)SPAPSTSSTVK ddPTM_HeLa_CUDC101_4h_R1 3 EVDATSPAPSTSSTVK 16 0 H3BM18;X6RHM1;Q16666-3;Q16666-2;Q16666;Q16666-6 H3BM18 IFI16 Gamma-interferon-inducible protein 16 1 0 EVDAT(0.919)S(0.081)PAPSTSSTVK;EVDAT(0.5)S(0.5)PAPSTSSTVK;EVDAT(0.958)S(0.042)PAPSTSSTVK ;; 225.29 5.01E-32 214419000 19717.1 17187.9 17926.7 16983.1 17719.1 16571.3 15133.8 8346 16825.4 20017.4 TRUE FALSE FALSE 17405.89143 17717.43883 18895.87163 17675.74423 16411.99729 16255.23006 15717.51574 9296.074904 16131.84989 19898.33561 0.874741072 0.89039803 0.949620712 0.888302648 0.824792466 0.816914056 0.789890976 0.467178516 0.810713529 1 14.28036014 -3.841324282 0.717041087 0.93386565 4.18E-35 0.789292859 0.062613358 1.364650864 0.326923387 0.009985714 1.183263181 0.000144104 3.841324282 -0.93386565 down GSGSQS(ph)SVPSVDQFTGVGIR ddPTM_HeLa_CUDC101_4h_R1 1 GSGSQSSVPSVDQFTGVGIR 20 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 0 GS(0.002)GS(0.254)QS(0.733)S(0.011)VPS(0.001)VDQFTGVGIR 145.82 2.21E-05 33254000 1263.4 1179.6 914.41 1081.2 1301.2 1505.4 1824.1 10321 1260.9 1223.9 TRUE FALSE FALSE 1115.306167 1215.942078 963.8457705 1125.296009 1205.213068 1476.687003 1894.456148 11495.90092 1208.925168 1216.620188 0.916725021 0.999442628 0.792232268 0.924936163 0.990623927 1.213761712 1.55714673 9.449046655 0.993675084 1 10.24866313 -4.257763656 4.162357103 0.972841362 10.16914191 0.998399713 0.101192528 0.007684559 0.292359757 0.018215039 0.211112587 5.52E-05 4.257763656 9.196300544 up VLAGETLS(ph)VNDPPDVLDR ddPTM_HeLa_CUDC101_4h_R1 2 VLAGETLSVNDPPDVLDR 18 0 Q12906-7;Q12906-4;Q12906-6;Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7EQR9 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 VLAGET(0.004)LS(0.996)VNDPPDVLDR;VLAGET(0.004)LS(0.996)VNDPPDVLDR ; 197.67 9.60E-17 22400000 3404.7 3385.7 2936.4 2668.3 3455.7 3616.8 3863.8 14489 3284.2 3168.7 TRUE FALSE FALSE 3005.606227 3490.009404 3095.150666 2777.124807 3200.779896 3547.815566 4012.82806 16138.36919 3148.823886 3149.852431 0.954205409 1.1079914 0.982633547 0.881668227 1.016168206 1.126343422 1.273973352 5.12353183 0.999673462 1 11.62106853 -4.257754964 4.190618305 0.995787429 5.468429922 0.996959966 0.067816063 0.009502533 0.370487368 0.011080392 0.127601326 5.52E-05 4.257754964 4.472642493 up VES(ph)MEALPILSR ddPTM_HeLa_CUDC101_4h_R1 4 VESMEALPILSR 12 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 VES(1)MEALPILSR;VES(0.999)MEALPILS(0.001)R;VES(1)MEALPILSR;VES(1)MEALPILSR ;;; 122.52 0.00012107 0 3467.42 2748.12 3042.47 2778 3455.25 3036 2913.06 3762.25 3158.26 3366.63 TRUE FALSE FALSE 3060.974284 2832.78632 3206.955131 2891.298848 3200.363091 2978.093358 3025.4177 4190.529332 3028.075186 3346.605135 0.914650567 0.846465659 0.958271144 0.863949803 0.956301375 0.889884895 0.904025894 1.252173221 0.904819978 1 11.70848262 -4.257751206 24.94227903 0.937254655 1.252173345 0.807776309 0.048237635 134.4307662 909084.2995 0.007675628 0.076109055 5.52E-05 4.257751206 0.314918691 LTPVSPESS(ph)STEEK ddPTM_HeLa_CUDC101_4h_R1 2 LTPVSPESSSTEEK 14 0 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 LTPVS(0.003)PES(0.175)S(0.595)S(0.175)T(0.052)EEK;LTPVSPES(0.005)S(0.984)S(0.01)T(0.002)EEK ; 214.89 4.13E-24 58116000 4393 4284.3 4073.9 3990.1 4802.4 4284.3 4170.9 5305.8 4388.8 5287 TRUE FALSE FALSE 3878.059199 4416.294205 4294.147357 4152.833525 4448.13652 4202.584116 4331.77301 5909.790825 4207.891806 5255.552689 0.737897502 0.840310138 0.817068653 0.790180171 0.846368933 0.799646462 0.824227872 1.124485126 0.800656383 1 12.35962677 -4.257750299 24.22459251 0.852152266 1.124485289 0.61429207 0.068078374 186.5326059 1224794.535 0.013834822 0.136710785 5.52E-05 4.257750299 0.272333023 ISMQDVDLSLGS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 5 ISMQDVDLSLGSPK 14 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ISMQDVDLS(0.003)LGS(0.997)PK;ISMQDVDLS(0.035)LGS(0.965)PK;ISMQDVDLS(0.002)LGS(0.998)PK;ISMQDVDLSLGS(1)PK;ISMQDVDLS(0.08)LGS(0.92)PK ;;;; 266.85 1.80E-70 729239000 20572.9 19659.2 17169.5 18448.7 19134.9 19103.9 18148.7 12408.5 19555.8 18134.5 TRUE FALSE FALSE 18161.37585 20264.87665 18097.7351 19201.11773 17723.35655 18739.52494 18848.70144 13821.03348 18749.70165 18026.63519 1.007474532 1.12416302 1.003944159 1.065152622 0.983176082 1.039546468 1.045602867 0.766700681 1.040111005 1 14.13784251 -4.257735 24.89722273 1.018921328 0.76670058 0.787786995 0.040976258 118.6783488 797603.7041 0.005586712 0.05537132 5.52E-05 4.257735 -0.252220748 TTEEQVQAST(ph)PCPR ddPTM_HeLa_CUDC101_4h_R1 3 TTEEQVQASTPCPR 14 0 Q14137 Q14137 BOP1 Ribosome biogenesis protein BOP1 1 0 TTEEQVQAS(0.089)T(0.911)PCPR;TTEEQVQAS(0.191)T(0.809)PCPR;TTEEQVQAST(1)PCPR ;; 207.08 6.55E-23 29309200 7206.2 6283.2 6396 6634.6 7418.4 7163.6 6359.4 3907.39 6341.1 5982.4 TRUE FALSE FALSE 6361.50016 6476.777945 6741.787107 6905.187665 6871.159412 7026.966265 6604.684188 4352.191483 6079.717174 5946.816419 1.069732057 1.089116846 1.133680045 1.161157026 1.15543493 1.181634974 1.110625202 0.731852335 1.022348219 1 12.53790182 -4.257714482 24.6611533 1.074519134 0.731852176 0.750147797 0.062323252 152.7693345 1011375.394 0.011000518 0.1094739 5.52E-05 4.257714482 -0.342666958 GTNTSS(ph)PYDAGADYLR ddPTM_HeLa_CUDC101_4h_R1 1 GTNTSSPYDAGADYLR 16 0 Q9UJJ2;Q8ND82 Q9UJJ2 ZNF280C Zinc finger protein 280C 1 0 GTNT(0.001)S(0.04)S(0.936)PY(0.003)DAGADY(0.019)LR 98.508 0.0049117 13288000 1990.6 1700.5 1410.5 1439.7 1814.1 1838.9 1478.3 2669.6 1785.7 1659.3 TRUE FALSE FALSE 1757.264886 1752.890389 1486.755897 1498.417189 1680.277457 1803.826046 1535.318526 2973.496473 1712.09269 1649.43041 1.065376796 1.062724671 0.90137534 0.908445231 1.018701636 1.093605426 0.9308174 1.802741392 1.037990254 1 10.6877522 -4.257705094 24.99989933 1.015144058 1.802741693 0.930242661 0.065685884 69.06324606 462337.6745 0.009425237 0.093999356 5.52E-05 4.257705094 0.787597634 SQEADVQDWEFR ddPTM_HeLa_CUDC101_4h_R1 1 SQEADVQDWEFR 12 0 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 0 0 129.71 0.0095484 7575500 1365.6 1271.2 1142 1141.7 1098.8 1058.8 1016.2 1128.6 1466.4 1489.1 FALSE FALSE TRUE 1205.526438 1310.364165 1203.739974 1188.263461 1017.743713 1038.605154 1055.395174 1257.075262 1405.954371 1480.242767 0.814411301 0.885235986 0.813204429 0.80274904 0.687551891 0.701645147 0.712987895 0.849235875 0.94981337 1 10.53161809 -9.474537147 0.227753378 1.158928164 0.714816679 0.681037236 0.055826559 2.892794919 0.199917561 0.374054776 0.064902877 3.35E-10 9.474537147 -0.444111485 LGS(ph)PDYGNSALLSLPGYRPTTR ddPTM_HeLa_CUDC101_4h_R1 2 LGSPDYGNSALLSLPGYRPTTR 22 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 LGS(0.478)PDY(0.387)GNS(0.135)ALLSLPGYRPTTR;LGS(0.997)PDY(0.002)GNS(0.001)ALLSLPGYRPTTR ; 81.726 0.00050015 313720000 1733.73 1396.83 1459.63 1386.68 1302.84 1330.26 987.51 733.39 1452.28 1700.53 TRUE FALSE FALSE 1530.504798 1439.864677 1538.542013 1443.234804 1206.732089 1304.887507 1025.598591 816.8761531 1392.416404 1690.415172 0.905401716 0.851781681 0.910156297 0.853775349 0.713867285 0.771933149 0.606714024 0.483239956 0.823712675 1 10.72316191 -3.835737731 0.335220465 0.977100168 1.77E-16 0.821471418 0.061904321 1.527747609 0.097882582 0.014925375 0.639668733 0.00014597 3.835737731 -0.977100168 down CPLPCIPTLIGT(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 CPLPCIPTLIGTPVK 15 0 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 CPLPCIPT(0.457)LIGT(0.543)PVK;CPLPCIPTLIGT(1)PVK ; 124.2 0.0039955 24994000 5673.1 4959.6 4086.9 4176.3 4621.3 3931.2 3887.7 2352.38 4203.2 2362.32 TRUE FALSE FALSE 5008.107818 5112.399397 4307.850176 4346.627566 4280.395906 3856.21891 4037.649891 2620.165431 4029.942317 2348.268816 2.132680801 2.177092914 1.834479148 1.85099233 1.822787867 1.642153949 1.719415539 1.115785984 1.716133302 1 11.19738185 -4.257640638 23.04027688 1.664275436 1.11578538 0.21992881 0.319190378 229.5776675 1392250.461 0.064978271 0.636587599 5.53E-05 4.257640638 -0.548490056 EQMIDLQNLLTTQS(ph)PSVK ddPTM_HeLa_CUDC101_4h_R1 1 EQMIDLQNLLTTQSPSVK 18 0 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 EQMIDLQNLLTTQS(0.904)PS(0.096)VK 270.73 1.11E-104 0 3129.7 2807.7 2224.9 2368.1 2657 2323.3 2168.6 1142.5 3099.3 2753.8 TRUE FALSE FALSE 2762.84131 2894.201909 2345.184824 2464.681354 2460.998403 2278.986923 2252.243628 1272.557582 2971.545542 2737.420275 1.009286493 1.057273498 0.85671347 0.900366442 0.899021033 0.832530885 0.82276136 0.464874756 1.085527703 1 11.41860123 -3.829583948 0.578090834 1.000045686 4.02E-21 0.828444783 0.069593223 1.476684142 0.236880888 0.011491091 1.103533682 0.000148053 3.829583948 -1.000045686 down TEPAAEAEAASGPSES(ph)PSPPAAEELPGSHAEPPVPAQGEAPGEQAR ddPTM_HeLa_CUDC101_4h_R1 1 TEPAAEAEAASGPSESPSPPAAEELPGSHAEPPVPAQGEAPGEQAR 46 0 P55884;P55884-2 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 1 0 TEPAAEAEAAS(0.005)GPS(0.287)ES(0.348)PS(0.348)PPAAEELPGS(0.011)HAEPPVPAQGEAPGEQAR 94.894 2.66E-19 8858900 908.66 626.12 775.35 656.49 835.42 681.45 693.88 441.03 572.87 580.46 TRUE FALSE FALSE 802.1482522 645.4100151 817.2677663 683.2644998 773.792731 668.4524766 720.643184 491.2350725 549.2560561 577.0073981 1.390187119 1.11854721 1.416390447 1.184152061 1.341044731 1.15848164 1.248932312 0.851349695 0.951904703 1 9.172446006 -4.257564952 23.91094964 1.210743827 0.851349432 0.335574521 0.147063406 195.7403206 1207910.717 0.0216693 0.215750909 5.53E-05 4.257564952 -0.359394395 SQETPATK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 SQETPATKK 9 1 M0QXK2;M0R221;M0R2B8;M0QZG7;M0R268;P09012 M0QXK2 SNRPA U1 small nuclear ribonucleoprotein A 0 1 ; SQETPATK(1)K;SQETPATK(1)K 169.41 0.0017331 6763800 3518.7 2862.2 4001.4 3850.1 3770.9 3208.2 3760.7 2829.7 3560.9 4420.6 FALSE TRUE FALSE 3106.24332 2950.380989 4217.727788 4007.12372 3492.72822 3147.00893 3905.751459 3151.82161 3414.118195 4394.306075 0.706879145 0.671409988 0.959816571 0.911889989 0.794830437 0.716156061 0.888820986 0.717251269 0.776941373 1 12.10141965 -9.469039852 1.219449496 0.999490982 0.791904738 0 0.114202321 0.386500257 1.03225404 0.066519868 0.016551412 3.40E-10 9.469039852 -0.207586244 SQGAALDK(ac)YAK ddPTM_HeLa_CUDC101_4h_R1 1 SQGAALDKYAK 11 1 A0A5K1VW95;P40925-2;P40925;P40925-3;C9JRL4;C9JF79 A0A5K1VW95 MDH1 "Malate dehydrogenase, cytoplasmic;Malate dehydrogenase" 0 1 SQGAALDK(1)YAK 105.25 0.0077164 558300 209.07 201.41 183.39 259.19 428.74 330.33 386.34 301.44 0 183.05 FALSE TRUE FALSE 184.5631315 207.6152034 193.3046181 269.7608885 397.1127044 324.0295056 401.2412632 335.7547111 0 181.9612105 1.014299317 1.140986053 1.062339702 1.482518652 2.18240307 1.780761432 2.205092295 1.845199371 0 1 7.507487127 -6.02723477 2.693224077 1.021522423 2.002945531 0.697459318 0.35012714 0.046268786 0.671866624 0.018387347 0.033941439 9.39E-07 6.02723477 0.981423108 AKGSETPGATPGS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 AKGSETPGATPGSK 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 AKGS(0.003)ET(0.005)PGAT(0.044)PGS(0.947)K 81.565 0.013259 68415000 10365 5673.5 11113 11931 10200 8253.1 9977.6 4566.9 10540 10878 TRUE FALSE FALSE 9150.030412 5848.29381 11713.80239 12417.59775 9447.566321 8095.685868 10362.43937 5086.777436 10105.53674 10813.29717 0.846183201 0.54084279 1.08327758 1.148363682 0.873698944 0.748678755 0.958305243 0.470418722 0.934547213 1 13.40051887 -4.257560501 23.89272565 0.911427677 0.470418395 0.388002275 0.163018043 166.8885451 1027899.657 0.022835895 0.227565536 5.53E-05 4.257560501 -0.441009282 SNS(ph)GRELTDEEILASVMIK ddPTM_HeLa_CUDC101_4h_R1 3 SNSGRELTDEEILASVMIK 19 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 S(0.077)NS(0.894)GRELT(0.029)DEEILASVMIK;S(0.193)NS(0.791)GRELT(0.017)DEEILASVMIK;S(0.067)NS(0.932)GRELTDEEILASVMIK ;; 119.25 0.00020706 59173400 9434 9354.4 9128.1 8167.5 10469.2 9445.5 8739.9 9299.3 10329.6 9956.8 TRUE FALSE FALSE 8328.160821 9642.597976 9621.592697 8500.605953 9696.907974 9265.342825 9077.000871 10357.89472 9903.809516 9897.576511 0.841434346 0.974238286 0.972116021 0.858857312 0.979725488 0.936122374 0.917093276 1.046508174 1.000629751 1 13.2728596 -4.257537327 24.09432551 0.929688932 1.046508251 0.222248049 0.054102345 272.1969365 1680635.624 0.008693933 0.087446705 5.53E-05 4.257537327 0.116819319 DSGS(ph)QEVLSELR ddPTM_HeLa_CUDC101_4h_R1 1 DSGSQEVLSELR 12 0 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 DS(0.423)GS(0.577)QEVLSELR 85.976 0.026752 15645000 407.25 316.32 346.61 256.95 384.31 367.72 242.89 1119.5 361.47 382.76 TRUE FALSE FALSE 359.5127724 326.0654443 365.348785 267.4295316 355.960217 360.7063537 252.2583487 1246.939355 346.5700536 380.4833265 0.944884433 0.856976959 0.960222852 0.702867939 0.935547479 0.948021447 0.662994489 3.27725098 0.910867913 1 8.571689423 -4.257522199 24.99862233 0.926857488 3.277251889 0.974970982 0.114998138 41.66444489 265882.892 0.016022568 0.162250804 5.53E-05 4.257522199 2.350394401 S(ph)AQWLDQEEAPK ddPTM_HeLa_CUDC101_4h_R1 3 SAQWLDQEEAPK 12 0 Q53H47-3;Q53H47 Q53H47-3 SETMAR Histone-lysine N-methyltransferase SETMAR;Histone-lysine N-methyltransferase;Transposon Hsmar1 transposase 1 0 S(1)AQWLDQEEAPK;S(1)AQWLDQEEAPK;S(1)AQWLDQEEAPK ;; 203.04 1.10E-16 33842500 5677.64 4333.67 4292.75 4474.42 4652.84 4427.66 4380.24 9287.5 5423.6 6095.3 TRUE FALSE FALSE 5012.115646 4467.185236 4524.82905 4656.906188 4309.609263 4343.209762 4549.187324 10344.75146 5200.036912 6059.044885 0.827212167 0.737275482 0.746789162 0.768587505 0.711268747 0.716814258 0.750809312 1.707323787 0.858227165 1 12.56487468 -4.257503123 24.99331629 0.847753122 1.70732412 0.881671601 0.098766434 134.4135437 853425.8195 0.018714505 0.190964916 5.53E-05 4.257503123 0.859570999 RSDS(ph)PEIPFQAAAGPSDGLDASSPGNSFVGLR ddPTM_HeLa_CUDC101_4h_R1 4 RSDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 32 1 Q12888;Q12888-3;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 RS(0.227)DS(0.773)PEIPFQAAAGPSDGLDASSPGNSFVGLR;RS(0.279)DS(0.721)PEIPFQAAAGPSDGLDASSPGNSFVGLR;RS(0.281)DS(0.719)PEIPFQAAAGPSDGLDASSPGNSFVGLR;RS(0.106)DS(0.894)PEIPFQAAAGPSDGLDASSPGNSFVGLR ;;; 138.37 1.44E-17 630050000 4606.16 4510.71 4178.17 4466.99 4741.14 4487.8 4442.07 5145.74 4261.95 4752.7 TRUE FALSE FALSE 4066.232907 4649.679629 4404.054508 4649.17316 4391.395548 4402.202692 4613.402128 5731.510242 4086.270617 4724.430729 0.860682089 0.984177755 0.932187339 0.984070553 0.929507871 0.931795373 0.976499052 1.213164203 0.864923385 1 12.20592479 -4.257496654 3.210966711 0.93956529 1.254016677 0.776445906 0.044338281 0.143998479 2.299514716 0.007282833 0.113280022 5.53E-05 4.257496654 0.314451387 SNVSSPATPT(ph)ASSSSSTTPTR ddPTM_HeLa_CUDC101_4h_R1 2 SNVSSPATPTASSSSSTTPTR 21 0 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SNVSSPAT(0.1)PT(0.804)AS(0.073)S(0.022)S(0.001)SSTTPTR;SNVSSPATPT(0.186)AS(0.186)S(0.186)S(0.087)S(0.087)S(0.087)T(0.087)T(0.087)PT(0.008)R ; 211.67 1.71E-25 60666000 4281.5 4017.9 3302.6 3568.1 4054.7 3955.6 3710.1 4152.2 3603.3 4253.8 TRUE FALSE FALSE 3779.62906 4141.686737 3481.148546 3713.622541 3755.592859 3880.15352 3853.1998 4624.869664 3454.770449 4228.498208 0.893846674 0.979469905 0.823258844 0.878236754 0.888162339 0.917619762 0.911245461 1.093738116 0.817020672 1 12.04592965 -4.257446907 24.27694116 0.929499448 1.093738213 0.410646116 0.061227439 211.2292455 1284336.784 0.008364321 0.084295107 5.53E-05 4.257446907 0.164238765 KAPPPPIS(ph)PTQLSDVSSPR ddPTM_HeLa_CUDC101_4h_R1 2 KAPPPPISPTQLSDVSSPR 19 1 Q9P0K7-3;Q9P0K7;Q9P0K7-2 Q9P0K7-3 RAI14 Ankycorbin 1 0 KAPPPPIS(0.903)PT(0.096)QLSDVSSPR;KAPPPPIS(0.993)PT(0.007)QLSDVSSPR ; 131.33 2.14E-05 104550000 5170 5513.5 4998.9 5448.6 5365.8 5545.4 5086.5 6191.3 5395.1 6377 TRUE FALSE FALSE 4563.980437 5683.3644 5269.155655 5670.817459 4969.975624 5439.630734 5282.688009 6896.092566 5172.711694 6339.06932 0.71997642 0.896561327 0.831219125 0.894582023 0.784022918 0.858111887 0.833353879 1.087871455 0.816004911 1 12.63005533 -4.257432684 23.98935252 0.858627104 1.087871613 0.500019971 0.07121426 218.1462836 1306013.78 0.014002504 0.141966063 5.53E-05 4.257432684 0.22924451 QSSS(ph)SRDDNMFQIGK ddPTM_HeLa_CUDC101_4h_R1 1 QSSSSRDDNMFQIGK 15 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 QS(0.008)S(0.101)S(0.849)S(0.041)RDDNMFQIGK 144.3 0.0017162 9903100 2905.8 2855.6 2459.5 2905.1 3041.8 2812.2 2296.5 4222.4 2902.3 2522.1 TRUE FALSE FALSE 2565.186529 2943.577651 2592.46801 3023.582535 2817.412474 2758.56197 2385.076774 4703.060948 2782.665966 2507.098437 1.02316945 1.174097358 1.034051145 1.206008703 1.123774174 1.100300622 0.951329529 1.875898002 1.109914922 1 11.29180293 -4.257407812 24.99752804 1.047066108 1.875898325 0.894256679 0.081356554 90.8587261 563342.4369 0.011833915 0.121413727 5.53E-05 4.257407812 0.828832217 NFS(ph)DNQLQEGK ddPTM_HeLa_CUDC101_4h_R1 2 NFSDNQLQEGK 11 0 P37802;P37802-2;X6RJP6 P37802 TAGLN2 Transgelin-2 1 0 NFS(1)DNQLQEGK;NFS(1)DNQLQEGK ; 158.29 0.00015321 82621000 4102.3 3776.3 3414.9 3637.3 3913.9 4643.4 5288.6 22330.1 4545.1 4414.8 TRUE FALSE FALSE 3621.434613 3892.643327 3599.519824 3785.644816 3625.179395 4554.834881 5492.583074 24872.06832 4357.749054 4388.540573 0.825202491 0.887001786 0.820208852 0.862620444 0.8260558 1.03789285 1.251573953 5.667503332 0.992983654 1 12.09952553 -4.257386721 4.079499181 0.907725604 6.093856608 0.997144315 0.076017022 0.010447579 0.369585406 0.013448143 0.159560414 5.53E-05 4.257386721 5.186131004 up EREKEIS(ph)DDEAEEEK ddPTM_HeLa_CUDC101_4h_R1 2 EREKEISDDEAEEEK 15 2 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 0 EREKEIS(1)DDEAEEEK;EREKEIS(1)DDEAEEEK ; 61.684 0.025609 52102000 13704.1 12312 11656.4 12642.8 12259.4 11912.8 11398.6 13167.2 13672.9 12166.6 TRUE FALSE FALSE 12097.72617 12691.31813 12286.58024 13158.42803 11355.04849 11685.58319 11838.24782 14666.10082 13109.29727 12094.23252 1.000288869 1.04936945 1.015904087 1.087991984 0.938881278 0.966211222 0.978834151 1.21265246 1.083929654 1 13.5620316 -4.257382721 24.69654584 1.002918902 1.212652558 0.610115441 0.047085269 136.8091447 832841.6649 0.005330295 0.054600947 5.53E-05 4.257382721 0.209733656 SQIHDIVLVGGSTR ddPTM_HeLa_CUDC101_4h_R1 2 SQIHDIVLVGGSTR 14 0 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 95.067 0.0095931 41648000 10603.4 9234.5 9052.6 8796.1 10534.9 9435 8906.2 9500.9 9225.3 8711.5 FALSE FALSE TRUE 9360.485526 9519.003999 9542.010939 9154.842978 9757.761415 9255.043095 9249.715117 10582.44405 8845.029229 8659.683611 1.080926965 1.099232308 1.101889095 1.057179845 1.126803455 1.06875072 1.068135458 1.222035877 1.021403278 1 13.0800986 -13.52287875 0.096241452 0.655131179 1.182043634 0.495744633 0.041174945 75.68330202 0.546729424 5.282604693 0.385461714 3.00E-14 13.52287875 0.526912455 VGS(ph)LTPPS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 VGSLTPPSSPK 11 0 Q2M2I8-2;Q2M2I8;E9PG46 Q2M2I8-2 AAK1 AP2-associated protein kinase 1 2 0 VGS(0.999)LT(0.001)PPS(0.719)S(0.281)PK 128.57 0.023 238330000 6217.2 5555.6 5666.7 6184.1 6077.4 5879.4 5626.1 6364.9 6937.5 6554.3 TRUE FALSE FALSE 5488.429241 5726.761451 5973.058943 6436.314328 5629.08231 5767.260241 5843.100562 7089.454488 6651.533314 6515.314732 0.842388966 0.878969273 0.916772127 0.98787466 0.863977036 0.88518521 0.896825526 1.088121569 1.020907445 1 12.66961916 -4.257373781 24.47265741 0.916409852 1.08812166 0.421543777 0.058312113 248.8152802 1497648.997 0.008933875 0.091482718 5.53E-05 4.257373781 0.171711808 VLS(ph)PEELEDR ddPTM_HeLa_CUDC101_4h_R1 2 VLSPEELEDR 10 0 Q86WJ1;Q86WJ1-2;Q86WJ1-3;A0A494C1P7;A0A0A0MRH8;A0A494C179;A0A494C1F7;A0A0A0MSH9;Q86WJ1-5;Q86WJ1-4 Q86WJ1 CHD1L Chromodomain-helicase-DNA-binding protein 1-like 1 0 VLS(1)PEELEDR;VLS(1)PEELEDR ; 104.87 0.010973 5711400 3670.7 3133.6 2711.8 3003.9 3336.8 2999.3 2549 2131.9 2957.6 3092.3 TRUE FALSE FALSE 3240.42611 3230.142502 2858.408111 3126.412026 3090.650912 2942.09335 2647.315784 2374.586879 2835.686476 3073.906862 1.054171859 1.050826406 0.929894183 1.017080922 1.005447156 0.957118573 0.86122186 0.772497992 0.922502406 1 11.58585774 -4.257365712 0.85630148 1.022432049 0.615181221 0.709680387 0.045462172 0.63843153 0.33884551 0.005704739 0.244952356 5.53E-05 4.257365712 -0.407250828 GLDDSTGGT(ph)PLTPAAR ddPTM_HeLa_CUDC101_4h_R1 1 GLDDSTGGTPLTPAAR 16 0 I3L2T8;I3L533;I3L2R9;Q9NXR1;Q9NXR1-1;I3L2R3;I3L522 I3L2T8 NDE1 Nuclear distribution protein nudE homolog 1 1 0 GLDDS(0.057)T(0.251)GGT(0.357)PLT(0.336)PAAR 101.72 0.0017569 0 2209.7 1950.7 2022.6 1761 2118.1 2215 1948.4 1299 1602.3 1916.2 TRUE FALSE FALSE 1950.682316 2010.798755 2131.947874 1832.821192 1961.851983 2172.752565 2023.550441 1446.872909 1536.252516 1904.802357 1.024086467 1.055646927 1.119248864 0.962210691 1.029950417 1.140670872 1.06234142 0.759592146 0.806515442 1 10.8954256 -4.25735956 24.82103289 1.030858197 0.759592028 0.442197354 0.088044576 164.925232 1003337.555 0.007578189 0.078453403 5.53E-05 4.25735956 -0.271266169 QQLS(ph)AEELDAQLDAYNAR ddPTM_HeLa_CUDC101_4h_R1 2 QQLSAEELDAQLDAYNAR 18 0 E9PB61;Q86V81 E9PB61 ALYREF THO complex subunit 4 1 0 QQLS(1)AEELDAQLDAYNAR;QQLS(1)AEELDAQLDAYNAR ; 195.18 1.25E-16 24406000 2036.09 1893.76 1974.67 1657.86 2005.95 2049.63 2138.81 2691.6 2438.92 2318.21 TRUE FALSE FALSE 1797.422617 1952.104501 2081.426633 1725.474697 1857.975065 2010.536723 2221.304618 2998.000864 2338.386685 2304.421184 0.779988758 0.847112722 0.903231861 0.748767069 0.806265399 0.872469294 0.963931695 1.300977827 1.014739277 1 11.17018871 -4.257358578 2.484548405 0.872981652 1.398855056 0.713506356 0.081530772 0.255770443 1.923032388 0.01333944 0.285195772 5.53E-05 4.257358578 0.525873404 KGEQGGPPPKAS(ph)PSTAGETPSGVK ddPTM_HeLa_CUDC101_4h_R1 2 KGEQGGPPPKASPSTAGETPSGVK 24 2 A0A087WW69;F8W8L6;A0A087WTA5;E7ERK9;Q9UI10-3;Q9UI10;Q9UI10-2 A0A087WW69 EIF2B4 Translation initiation factor eIF-2B subunit delta 1 0 KGEQGGPPPKAS(0.682)PS(0.22)T(0.081)AGET(0.016)PS(0.002)GVK;KGEQGGPPPKAS(0.616)PS(0.292)T(0.074)AGET(0.013)PS(0.005)GVK ; 72.805 0.00025082 120969000 6603.6 4977.8 5720 6040.2 6483.4 6057.2 5803 4434.2 5374.2 6049.6 TRUE FALSE FALSE 5829.536018 5131.160118 6029.240502 6286.545464 6005.132499 5941.669002 6026.823654 4938.971404 5152.673201 6013.61671 0.969389354 0.853256928 1.002598069 1.045385126 0.998589167 0.988035867 1.002196173 0.821298005 0.856834323 1 12.5540172 -4.257350905 24.66919166 0.98345096 0.821297928 0.313574306 0.061852957 218.474089 1318173.228 0.006583606 0.067495319 5.53E-05 4.257350905 -0.162153032 NSS(ph)QDDLFPTSDTPR ddPTM_HeLa_CUDC101_4h_R1 2 NSSQDDLFPTSDTPR 15 0 Q9H6T3-3;Q9H6T3;Q9H6T3-2 Q9H6T3-3 RPAP3 RNA polymerase II-associated protein 3 1 0 NS(0.006)S(0.994)QDDLFPTSDTPR;NS(0.23)S(0.77)QDDLFPTSDTPR ; 196.65 3.01E-16 11434000 1800.03 1993.69 1805.56 1585.67 1899.29 2009.72 1933.42 2713.4 2022.13 2336.39 TRUE FALSE FALSE 1589.033212 2055.113226 1903.174035 1650.340476 1759.183161 1971.387939 2007.992657 3022.282488 1938.776946 2322.493048 0.684192882 0.88487379 0.81945306 0.710590061 0.757454651 0.848824043 0.864585002 1.301309595 0.834782669 1 11.18145856 -4.257269856 4.115491378 0.831824441 1.342528767 0.737211781 0.085782377 0.132205602 4.825185547 0.016994049 0.200128395 5.53E-05 4.257269856 0.510704325 IYHLPDAES(ph)DEDEDFKEQTR ddPTM_HeLa_CUDC101_4h_R1 7 IYHLPDAESDEDEDFKEQTR 20 1 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C2Y0 B5MCX3 2-Sep Septin-2 1 0 IY(0.001)HLPDAES(0.964)DEDEDFKEQT(0.036)R;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR ;;;;;; 111.45 7.31E-05 9267776100 17558.2 16544.8 16249 14901.9 16511.5 16167.3 14929.9 15985.7 17304.4 15672.2 TRUE FALSE FALSE 15500.05441 17054.52568 17127.47009 15509.66389 15293.47954 15858.93569 15505.75124 17805.44747 16591.10531 15578.98106 0.994933774 1.094713808 1.099396041 0.995550597 0.981673929 1.017970022 0.995299448 1.142914765 1.064967294 1 13.92731326 -4.257255928 24.58658914 1.010865397 1.142914831 0.330884894 0.044211515 237.4075403 1395201.689 0.006079877 0.061805724 5.53E-05 4.257255928 0.132049434 LGS(ph)PGAPQQEDAMDDKELIEYFK ddPTM_HeLa_CUDC101_4h_R1 3 LGSPGAPQQEDAMDDKELIEYFK 23 1 H0YGG4 H0YGG4 EIF2B1 1 0 LGS(0.876)PGAPQQEDAMDDKELIEY(0.124)FK;LGS(1)PGAPQQEDAMDDKELIEYFK;LGS(1)PGAPQQEDAMDDKELIEYFK ;; 107.34 6.59E-06 51784800 6066 5240.8 5048.2 5447.1 5496.7 5138.3 5078.9 5095.9 6151.1 5331.2 TRUE FALSE FALSE 5354.952675 5402.262836 5321.120962 5669.256282 5091.219392 5040.295488 5274.794874 5675.996658 5897.549054 5299.489785 1.010465704 1.019393009 1.004081747 1.069773981 0.960699916 0.951090707 0.995340134 1.071045872 1.112852235 1 12.37163775 -4.257222622 24.11710854 1.003242675 1.071045917 0.084161008 0.046213699 253.0559702 1447219.548 0.00417641 0.043520656 5.53E-05 4.257222622 0.067803242 MVQCNEGAYFS(ph)DDIY(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 MVQCNEGAYFSDDIYK 16 0 Q8NHV1 Q8NHV1 GIMAP7 GTPase IMAP family member 7 2 0 MVQCNEGAYFS(1)DDIY(1)K 81.128 0.0012848 0 959.36 990.81 919.99 813.28 894.59 919.93 875.08 657.97 1161.1 909.24 TRUE FALSE FALSE 846.9052751 1021.335682 969.7274422 846.4490737 828.597878 902.383868 908.8321287 732.8706452 1113.238967 903.8318 0.937016462 1.130006359 1.072906975 0.93651172 0.916761147 0.998398007 1.005532366 0.810848484 1.231688204 1 9.819910507 -4.25720912 24.29275814 0.985020505 0.81084838 0.211470894 0.099865307 237.5565637 1364115.796 0.009170263 0.094694292 5.53E-05 4.25720912 -0.174172125 T(ph)PGTPGTPS(ph)YPR ddPTM_HeLa_CUDC101_4h_R1 1 TPGTPGTPSYPR 12 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77 MAP2 Microtubule-associated protein 2 2 0 T(0.999)PGT(0.114)PGT(0.358)PS(0.528)YPR 108.23 0.022888 24209000 2840.9 2269.6 2555.8 2422.7 2321.2 2084.5 1901 1141.3 2723.3 2838.1 TRUE FALSE FALSE 2507.894009 2339.523686 2693.974279 2521.508178 2149.9697 2044.741636 1974.322207 1271.220979 2611.044421 2821.218855 0.888939901 0.829259907 0.954897304 0.893765534 0.762071222 0.724772427 0.699811786 0.450592827 0.925502258 1 11.46210287 -3.815524012 0.41172385 0.956386487 3.23E-29 0.879291494 0.053242448 1.808541893 0.159496205 0.014704472 0.916283258 0.000152924 3.815524012 -0.956386487 down SQPERDWVLNEFR ddPTM_HeLa_CUDC101_4h_R1 2 SQPERDWVLNEFR 13 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2;A0A0U1RQJ0 A0A1X7SBZ2;A0A0U1RQJ0 DDX17 Probable ATP-dependent RNA helicase DDX17 0 0 ; ; 129.54 0.0015007 14570700 6292.3 6804 6199.5 6249.5 8795.3 6952.2 7073.4 8822.9 6284.8 2400.1 FALSE FALSE TRUE 5554.726133 7013.623175 6534.663722 6504.381623 8146.488242 6819.598368 7346.223407 9827.263273 6025.737884 2385.824098 2.328221153 2.939706737 2.73895453 2.726262019 3.414538501 2.858382717 3.079113591 4.119022554 2.525642141 1 11.22027196 -8.374803894 0.207379018 2.53E-15 3.925447363 0.452917712 0.561258568 0.970439886 0.11173188 1.279860246 0.590937508 4.22E-09 8.374803894 3.925447363 VISGTTLGYLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 VISGTTLGYLSPK 13 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3;E5RJ67;E5RJN7 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 0 VISGTTLGYLS(1)PK;VISGTTLGYLS(1)PK ; 158.52 7.22E-05 58769000 3729.3 2985.4 2330.69 3330.1 3132.2 3297.8 3102.4 1094.66 3069.2 2693.8 TRUE FALSE FALSE 3292.157107 3077.376635 2456.694151 3465.915872 2901.143846 3234.89996 3222.060607 1219.27167 2942.686277 2677.777158 1.229436549 1.149228055 0.917437862 1.294325729 1.083414965 1.208054206 1.203259427 0.455329775 1.09892874 1 11.38682019 -4.257189777 24.86624927 1.122491327 0.45532949 0.781805626 0.107077972 151.8227533 888343.5806 0.016163577 0.167867843 5.53E-05 4.257189777 -0.667161837 STS(ph)PIIGSPPVR ddPTM_HeLa_CUDC101_4h_R1 1 STSPIIGSPPVR 12 0 Q86TB9-2;Q86TB9-4;Q86TB9 Q86TB9-2 PATL1 Protein PAT1 homolog 1 1 0 S(0.013)T(0.081)S(0.906)PIIGSPPVR 174.21 5.87E-07 81750000 2353.3 1994.6 1822.9 1613.5 1927.2 1808.2 1817.5 2450.6 1684.2 2054.4 TRUE FALSE FALSE 2077.449741 2056.051262 1921.451488 1679.305504 1785.034296 1773.711598 1887.601584 2729.566398 1614.776563 2042.180337 1.017270465 1.006792213 0.940882376 0.822310093 0.874082598 0.868538182 0.924307001 1.336594202 0.790712031 1 10.99589456 -4.257168489 24.78898296 0.968903519 1.336594366 0.626759007 0.089343155 193.0934439 1120699.342 0.011739013 0.122374548 5.53E-05 4.257168489 0.367690848 SQPSK(ac)TLFVK ddPTM_HeLa_CUDC101_4h_R1 1 SQPSKTLFVK 10 1 P19338;H7BY16 P19338 NCL Nucleolin 0 1 SQPSK(1)TLFVK 127.42 0.002273 859410 463.36 410.22 137.29 255.97 480.51 506.95 488.54 427.24 360 169.36 FALSE TRUE FALSE 409.0456432 422.858392 144.7123127 266.409563 445.0637346 497.2807734 507.3831514 475.8752746 345.1606476 168.3526392 2.429695461 2.511741984 0.859578521 1.582449579 2.643639783 2.953804442 3.013811687 2.826657645 2.050224156 1 7.395342528 -3.708450206 0.08284757 4.64E-22 5.977003668 0.341438102 0.607764458 68.05047149 0.770818176 13.65045332 52.72457962 0.000195682 3.708450206 5.977003668 ATPELGSSENSAS(ph)SPPR ddPTM_HeLa_CUDC101_4h_R1 1 ATPELGSSENSASSPPR 17 0 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 ATPELGSS(0.001)ENS(0.013)AS(0.682)S(0.304)PPR 95.755 0.0045832 34798000 2827.8 3042.1 2748.6 2554.9 3084.1 2606.7 2635 1382.5 3136.5 2482.6 TRUE FALSE FALSE 2496.329571 3135.823495 2897.19763 2659.099865 2856.592087 2556.981541 2736.632833 1539.878212 3007.212142 2467.833385 1.011547046 1.270678772 1.173984292 1.077503806 1.157530369 1.036124058 1.10892123 0.623979812 1.218563685 1 11.26902928 -4.257165738 24.68434254 1.056631597 0.623979607 0.639472307 0.102381928 188.4921463 1088671.425 0.014284886 0.148717693 5.53E-05 4.257165738 -0.432651991 SQQENPESQPQK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 SQQENPESQPQKR 13 1 J3KS37;O94762-4;O94762;J3KSV9 J3KS37 RECQL5 ATP-dependent DNA helicase Q5 0 1 ; SQQENPESQPQK(1)R;SQQENPESQPQK(1)R 187.78 2.05E-08 474930 0 0 66.565 322.479 0 161.83 312.57 72.004 0 0 FALSE TRUE FALSE 0 0 70.16370525 335.6310875 0 158.7433624 324.6259296 80.20064431 0 0 0 SQQENPESQPQK(ac)RPR ddPTM_HeLa_CUDC101_4h_R1 1 SQQENPESQPQKRPR 15 2 J3KS37;O94762-4;O94762;J3KSV9 J3KS37 RECQL5 ATP-dependent DNA helicase Q5 0 1 SQQENPESQPQK(1)RPR 150.9 0.0026452 700920 0 284.26 216.67 375.22 348.23 266.34 224.6 233.95 0 0 FALSE TRUE FALSE 0 293.0177137 228.3838356 390.5230934 322.5417667 261.2600083 233.2628972 260.5819223 0 0 0 SSAEDRS(ph)PENTGSSVAVDNFPQVDK ddPTM_HeLa_CUDC101_4h_R1 1 SSAEDRSPENTGSSVAVDNFPQVDK 25 1 H0Y7V5;Q7Z3E2 H0Y7V5 CCDC186 Coiled-coil domain-containing protein 186 1 0 S(0.001)S(0.001)AEDRS(0.997)PENT(0.001)GSSVAVDNFPQVDK 114.19 5.93E-08 19577000 1106.2 1074.9 1116.9 1181.2 1588.1 1242.2 1175.2 1520.2 1330 1595.7 TRUE FALSE FALSE 976.5329129 1108.016395 1177.282992 1229.374442 1470.949027 1218.507105 1220.527858 1693.253423 1275.176837 1586.208705 0.615639613 0.698531278 0.742199301 0.775039525 0.927336373 0.768188386 0.769462337 1.067484636 0.803914915 1 10.63136689 -4.257142644 23.67454504 0.800584656 1.067484864 0.391725221 0.103219503 249.1244802 1372532.124 0.02056018 0.211377793 5.53E-05 4.257142644 0.266900208 ATAPQTQHVS(ph)PMR ddPTM_HeLa_CUDC101_4h_R1 14 ATAPQTQHVSPMR 13 0 P29692-2;E9PQ49;P29692;P29692-4;P29692-3;E9PRY8;A0A087X1X7;E9PK01;E9PQZ1;E9PI39;E9PL71;E9PPR1;E9PL12;E9PK06 P29692-2 EEF1D Elongation factor 1-delta 1 0 ATAPQTQHVS(1)PMR;AT(0.017)APQT(0.001)QHVS(0.982)PMR;ATAPQT(0.001)QHVS(0.999)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.007)QHVS(0.993)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.001)QHVS(0.999)PMR;ATAPQT(0.001)QHVS(0.999)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.001)QHVS(0.999)PMR ;;;;;;;;;;;;; 176.25 2.11E-07 29097797400 40003.23 35702.65 36023.27 34354.21 38038.14 37539.22 35523.89 37430.82 38697.67 38009.75 TRUE FALSE FALSE 35314.11202 36802.60633 37970.79694 35755.32318 35232.14219 36823.22192 36894.05834 41691.79325 37102.53566 37783.66632 0.934639633 0.974034812 1.004952686 0.946316932 0.932470182 0.974580434 0.976455223 1.103434296 0.981972881 1 15.20547508 -4.257086102 4.193952293 0.967653234 1.114839092 0.74591467 0.023485493 0.104806954 4.093684928 0.004002168 0.046368984 5.53E-05 4.257086102 0.147185859 (ac)S(ph)QKQEEENPAEETGEEKQDTQEKEGILPER ddPTM_HeLa_CUDC101_4h_R1 1 SQKQEEENPAEETGEEKQDTQEKEGILPER 30 3 O43768;O43768-2;O43768-3;A0A1W2PRU0;A6NMQ3;Q5T5H1;O43768-9;O43768-4;O43768-8 O43768 ENSA Alpha-endosulfine 1 0 S(0.991)QKQEEENPAEET(0.009)GEEKQDTQEKEGILPER 41.06 0.010521 47279000 1625.1 1490.2 1709.8 1578.8 1643.9 1927.2 1792.1 4666.9 1963 1851 TRUE FALSE FALSE 1434.608241 1536.111296 1802.23696 1643.190288 1522.632772 1890.441871 1861.221897 5198.161032 1882.084309 1839.99017 0.779682558 0.834847556 0.979481842 0.893042971 0.827522232 1.027419549 1.011539044 2.825102611 1.022877372 1 10.84548234 -4.257075564 4.329654207 0.900333662 2.974384156 0.978245805 0.084798468 0.023739243 1.042028306 0.013467636 0.151544202 5.53E-05 4.257075564 2.074050494 up LRTS(ph)TSDLSR ddPTM_HeLa_CUDC101_4h_R1 2 LRTSTSDLSR 10 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 LRT(0.097)S(0.327)T(0.327)S(0.249)DLSR;LRT(0.085)S(0.816)T(0.085)S(0.014)DLSR ; 121.21 0.022722 90431000 7026.9 5637.8 5346.5 6193.5 5504.1 6051.2 5480 6574.5 5554.7 5710.8 TRUE FALSE FALSE 6203.217434 5811.493936 5635.547962 6446.097701 5098.073509 5935.783442 5691.365436 7322.914505 5325.732915 5676.831908 1.092725227 1.023721334 0.992727644 1.135509701 0.898049051 1.045615501 1.002560148 1.289965006 0.938152301 1 12.47087031 -4.2570576 24.75488302 1.034320456 1.289965123 0.586745495 0.067546345 196.3506671 1109236.045 0.008274192 0.086395594 5.53E-05 4.2570576 0.255644667 TEEPLGS(ph)PHPSGTVESPGEGPQDTR ddPTM_HeLa_CUDC101_4h_R1 1 TEEPLGSPHPSGTVESPGEGPQDTR 25 0 A0A0A0MR84;M0R202;A0A0B4J2G2;Q9NWS9-2;Q9NWS9 A0A0A0MR84 ZNF446 Zinc finger protein 446 1 0 T(0.043)EEPLGS(0.936)PHPS(0.016)GT(0.005)VESPGEGPQDTR 58.861 0.0040385 6633100 1939.3 1571.8 1408.2 1497 2281.2 1722.2 1627.7 1767.7 1996.6 1770.9 TRUE FALSE FALSE 1711.978194 1620.225295 1484.331552 1558.054131 2112.920421 1689.351904 1690.480934 1968.927823 1914.299303 1760.366608 0.972512308 0.920390837 0.843194562 0.885073668 1.200272949 0.95965914 0.9603005 1.118476012 1.087443544 1 10.7816602 -4.257051787 23.48607955 0.977008127 1.118476148 0.153928351 0.09629936 256.7821365 1374384.396 0.012213215 0.126611482 5.53E-05 4.257051787 0.141468022 TASTPTPPQT(ph)GGGLEPQANGETPQVAVIVRPDDR ddPTM_HeLa_CUDC101_4h_R1 1 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9J6B6;C9JSU8;C9J556;C9K073;C9J2Z7;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 T(0.007)AS(0.044)T(0.101)PT(0.391)PPQT(0.456)GGGLEPQANGET(0.001)PQVAVIVRPDDR 57.951 0.0010129 427590000 940.87 733.55 825.48 648.77 922.95 820.68 667.68 1115.1 699.5 658.89 TRUE FALSE FALSE 830.5826449 756.149806 870.1079457 675.2296448 854.8658173 805.0268963 693.4326413 1242.038477 670.6663139 654.970893 1.26812146 1.154478488 1.328468112 1.030930767 1.305196653 1.229103316 1.058722836 1.896326218 1.02396354 1 9.355286984 -4.256990759 24.97327365 1.153251066 1.89632652 0.783076742 0.116977682 168.6855959 946917.294 0.017647796 0.187893913 5.53E-05 4.256990759 0.743075454 LCS(ph)SSSSDTSSR ddPTM_HeLa_CUDC101_4h_R1 1 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 LCS(0.918)S(0.077)S(0.004)S(0.001)S(0.001)DTSSR 174.23 5.86E-07 5445600 1304.8 946.11 1062.8 1340.1 943.34 797.56 1022.5 700.38 858.15 920.55 TRUE FALSE FALSE 1151.853322 975.2585277 1120.258183 1394.75507 873.7516876 782.3478718 1061.938168 780.1084282 822.7766938 915.0745277 1.258753563 1.065769506 1.224226168 1.524198334 0.954842104 0.85495536 1.160493638 0.852508079 0.899136266 1 9.837745437 -4.256982616 23.68062128 1.127250184 0.852507856 0.12725007 0.190065228 317.5699036 1687241.906 0.025729859 0.267646573 5.53E-05 4.256982616 -0.274742328 AQHPDYS(ph)FGELSR ddPTM_HeLa_CUDC101_4h_R1 2 AQHPDYSFGELSR 13 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9 Q86U86-8 PBRM1 Protein polybromo-1 1 0 AQHPDY(0.002)S(0.997)FGELSR;AQHPDYS(0.943)FGELS(0.057)R ; 74.812 0.027035 9639000 4207.9 3207.4 4075.1 4165.6 5033.9 4769.1 4121.6 1737.93 3727.3 4032.6 TRUE FALSE FALSE 3714.656341 3306.216192 4295.412233 4335.491173 4662.559226 4678.137363 4280.571493 1935.768926 3573.659116 4008.613916 0.926668524 0.824777906 1.071545507 1.081543712 1.16313502 1.167021185 1.067843295 0.482902312 0.891494963 1 11.96888776 -4.256974189 24.83760313 1.001927613 0.482902084 0.685857575 0.108636559 204.7695208 1138983.985 0.016192162 0.171246605 5.53E-05 4.256974189 -0.519025529 AVPIAVADEGES(ph)ESEDDDLKPR ddPTM_HeLa_CUDC101_4h_R1 2 AVPIAVADEGESESEDDDLKPR 22 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 0 AVPIAVADEGES(0.999)ES(0.001)EDDDLKPR;AVPIAVADEGES(1)ESEDDDLKPR ; 151.84 1.92E-07 123016000 4880.8 4109.3 4234.2 4313.3 4161 4306.5 4058.9 2890.9 4216.3 3752 TRUE FALSE FALSE 4308.680023 4235.902662 4463.11366 4489.215018 3854.05132 4224.360688 4215.453133 3219.988371 4042.502329 3729.682937 1.155240297 1.135727281 1.196646936 1.203645214 1.033345564 1.132632655 1.130244368 0.863341047 1.083872918 1 11.86483728 -4.256894936 24.66768989 1.099884152 0.863340931 0.574517918 0.064135189 289.7275537 1572600.677 0.011251888 0.119469786 5.53E-05 4.256894936 -0.236543221 VASS(ph)PVMVSNPATR ddPTM_HeLa_CUDC101_4h_R1 3 VASSPVMVSNPATR 14 0 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 VAS(0.127)S(0.869)PVMVS(0.004)NPATR;VAS(0.091)S(0.909)PVMVSNPATR;VAS(0.142)S(0.858)PVMVSNPATR ;; 209.53 1.06E-23 137163000 7600.9 6801.3 6306.4 6300.2 7341.4 6392.3 6744.2 4156.7 7185.3 6820.7 TRUE FALSE FALSE 6709.934024 7010.839991 6647.34306 6557.149388 6799.839548 6270.377528 7004.326053 4629.881926 6889.118893 6780.130173 0.989646784 1.034027344 0.980415256 0.96711261 1.002906932 0.924816688 1.033066604 0.68286033 1.016074724 1 12.72709726 -4.2568611 24.99993153 0.992499289 0.682860205 0.902064711 0.030773774 89.45823457 488473.9191 0.003709042 0.03988517 5.54E-05 4.2568611 -0.309639083 TTGMSQS(ph)TELLPDATDEEVAPPKPPLPGIR ddPTM_HeLa_CUDC101_4h_R1 1 TTGMSQSTELLPDATDEEVAPPKPPLPGIR 30 1 Q13905-2;Q13905;Q13905-4;Q13905-3 Q13905-2 RAPGEF1 Rap guanine nucleotide exchange factor 1 1 0 T(0.005)T(0.005)GMS(0.059)QS(0.713)T(0.219)ELLPDATDEEVAPPKPPLPGIR 103.09 1.15E-09 5185600 413.34 344.96 459.23 358.77 553.5 352.17 389.68 180.49 388.55 360.81 TRUE FALSE FALSE 364.8889118 355.5878087 484.0573629 373.4021913 512.6694077 345.452944 404.7100881 201.036252 372.5338045 358.6638861 1.017356154 0.99142351 1.349612776 1.041092248 1.429386754 0.963166233 1.1283826 0.560514342 1.038671076 1 8.486488677 -4.25684454 24.62001122 1.063271414 0.560514088 0.508926728 0.155776457 255.1313467 1366980.056 0.02137747 0.227860695 5.54E-05 4.25684454 -0.502757326 S(ph)SPGQTPEEGAQALAEFAALHGPALR ddPTM_HeLa_CUDC101_4h_R1 5 SSPGQTPEEGAQALAEFAALHGPALR 26 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 1 0 S(0.459)S(0.459)PGQT(0.083)PEEGAQALAEFAALHGPALR;S(0.481)S(0.481)PGQT(0.038)PEEGAQALAEFAALHGPALR;S(0.5)S(0.5)PGQTPEEGAQALAEFAALHGPALR;S(0.416)S(0.416)PGQT(0.168)PEEGAQALAEFAALHGPALR;S(0.495)S(0.495)PGQT(0.009)PEEGAQALAEFAALHGPALR ;;;; 190.97 5.61E-18 2235991500 10642.3 9247.42 7820.15 9036.5 9870.7 9502.2 8765.2 8725 10150 9070.31 TRUE FALSE FALSE 9394.825727 9532.322049 8242.930964 9405.047529 9142.558126 9320.961367 9103.2767 9718.218732 9731.612704 9016.359393 1.041975516 1.057225165 0.914219432 1.043109211 1.01399664 1.033783256 1.009639956 1.077842875 1.079328394 1 13.13832931 -4.256825635 23.68779818 1.017230232 1.077842926 0.130400701 0.042412267 297.5687828 1527649.683 0.004998541 0.053278158 5.54E-05 4.256825635 0.060612694 RTST(ph)PVIMEGVQEETDTR ddPTM_HeLa_CUDC101_4h_R1 2 RTSTPVIMEGVQEETDTR 18 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 RT(0.07)S(0.43)T(0.5)PVIMEGVQEETDTR;RT(0.305)S(0.305)T(0.39)PVIMEGVQEETDTR ; 121.65 0.0008585 27004000 3047.52 2759.13 2728.7 2603.87 2942.47 2893.9 2664.04 2968.28 2749.42 3020.8 TRUE FALSE FALSE 2690.294325 2844.135525 2876.221776 2710.067073 2725.40985 2838.703679 2766.792915 3306.176997 2636.087744 3002.832147 0.895918984 0.947151018 0.957836347 0.902503683 0.907613119 0.94534211 0.921394463 1.101019582 0.877867165 1 11.55210812 -4.256814652 24.75766145 0.942208503 1.101019656 0.65695432 0.036204145 237.6667682 1272255.276 0.005770214 0.061449052 5.54E-05 4.256814652 0.158811154 EQTFSGGT(ph)SQDTK ddPTM_HeLa_CUDC101_4h_R1 1 EQTFSGGTSQDTK 13 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 EQTFS(0.161)GGT(0.625)S(0.214)QDTK 193.98 1.17E-15 11244000 1195.1 870.02 942.51 1125.4 995.14 1277.6 1676.1 7107.3 1065.6 1389.4 TRUE FALSE FALSE 1055.01219 896.824285 993.4649415 1171.298676 921.7305048 1253.231909 1740.747738 7916.366303 1021.675517 1381.135787 0.763872893 0.649338243 0.719310115 0.848069167 0.667371386 0.907392249 1.260374074 5.731779871 0.73973575 1 10.43163945 -4.256794979 3.835775283 0.843845864 6.240248075 0.99395172 0.114944141 0.016730924 0.476655081 0.020025934 0.254646052 5.54E-05 4.256794979 5.39640221 up TPS(ph)SSSLSQR ddPTM_HeLa_CUDC101_4h_R1 3 TPSSSSLSQR 10 0 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 T(0.266)PS(0.321)S(0.321)S(0.075)S(0.018)LSQR;T(0.411)PS(0.481)S(0.05)S(0.05)S(0.008)LSQR;T(0.429)PS(0.539)S(0.01)S(0.01)S(0.01)LSQR ;; 111.52 0.0078088 21592600 1913.37 1938.06 1778.92 1980.85 2134.91 2117.89 2206.35 6303.1 1886.31 2049.57 TRUE FALSE FALSE 1689.087669 1997.769331 1875.093796 2061.637625 1977.421943 2077.494777 2291.449659 7020.619426 1808.555503 2037.379066 0.82904929 0.980558485 0.92034606 1.011906748 0.970571444 1.019689861 1.124704625 3.445907314 0.887687291 1 10.99249871 -4.256769461 4.022760117 0.940512616 3.679464574 0.993979511 0.05789917 0.016563487 0.556965035 0.010932296 0.132338417 5.54E-05 4.256769461 2.738951958 up SNTAGS(ph)QSQVETEA ddPTM_HeLa_CUDC101_4h_R1 2 SNTAGSQSQVETEA 14 0 Q02790 Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" 1 0 S(0.008)NT(0.004)AGS(0.903)QS(0.085)QVETEA;S(0.001)NT(0.003)AGS(0.763)QS(0.233)QVETEA ; 121.92 0.0013467 62894000 2676.5 2341.8 1975.35 2837 3255.3 3287.8 3358.8 12084.4 2872.8 3170.3 TRUE FALSE FALSE 2362.764727 2413.948082 2082.143396 2952.705123 3015.163004 3225.090693 3488.350041 13460.03925 2754.381968 3151.442915 0.749740608 0.765981853 0.66069526 0.936937524 0.956756345 1.023369542 1.106905673 4.271071891 0.874006619 1 11.62179681 -4.256761666 4.119450127 0.876419051 4.570062374 0.988217166 0.110783617 0.020780799 0.760441829 0.019261969 0.227782729 5.54E-05 4.256761666 3.693643323 up DSAIPVES(ph)DTDDEGAPR ddPTM_HeLa_CUDC101_4h_R1 3 DSAIPVESDTDDEGAPR 17 0 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 1 0 DSAIPVES(0.928)DT(0.072)DDEGAPR;DSAIPVES(0.999)DT(0.001)DDEGAPR;DSAIPVES(0.975)DT(0.025)DDEGAPR ;; 216 2.79E-24 279596000 20134.8 16818.8 16423.2 15979.9 15827.8 16027.7 15659.9 21879.9 18506.8 17878.4 TRUE FALSE FALSE 17774.62927 17336.96729 17311.08787 16631.62939 14660.21473 15721.99833 16263.90759 24370.61937 17743.94187 17772.05848 1.000144653 0.975518245 0.974062059 0.93583022 0.824902458 0.884647006 0.915139212 1.371288498 0.998417932 1 14.11732317 -4.256750471 24.84393275 0.968797687 1.371288676 0.820390978 0.058872511 169.2934699 896957.9097 0.009648168 0.104732142 5.54E-05 4.256750471 0.402490989 AES(ph)GDSLGSEDRDLLYSIDAYR ddPTM_HeLa_CUDC101_4h_R1 1 AESGDSLGSEDRDLLYSIDAYR 22 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 AES(0.632)GDS(0.09)LGS(0.276)EDRDLLY(0.001)S(0.001)IDAYR 54.465 0.014926 8341400 515.03 546.01 410.79 445.25 530.88 528.44 347.8 1071.1 564.98 446.74 TRUE FALSE FALSE 454.6589641 562.8319209 432.99855 463.4092195 491.7180401 518.3608874 361.2147625 1193.029694 541.6912853 444.0827706 1.023815816 1.267403192 0.975040192 1.043519925 1.107266646 1.167261875 0.813395129 2.686502998 1.219798022 1 8.794684789 -4.256744494 24.99913921 1.035180617 2.686503666 0.934321872 0.12841144 68.06365644 362410.0061 0.014685203 0.158416924 5.54E-05 4.256744494 1.65132305 AEAGEQPGT(ph)AER ddPTM_HeLa_CUDC101_4h_R1 1 AEAGEQPGTAER 12 0 P56182 P56182 RRP1 Ribosomal RNA processing protein 1 homolog A 1 0 AEAGEQPGT(1)AER 118.51 0.017534 5076600 1348 1533.6 1798.2 1600 1924.1 1741.5 1578.4 753.02 1826.3 1687.6 TRUE FALSE FALSE 1189.989483 1580.848398 1895.416131 1665.254916 1782.162976 1708.283789 1639.279417 838.740753 1751.019141 1677.56208 0.709356451 0.942348672 1.129863481 0.992663661 1.062352921 1.018313307 0.977179585 0.499975985 1.043787984 1 10.71215044 -4.256654628 24.18496452 0.92136872 0.499975707 0.542551575 0.121450161 251.8576748 1272965.474 0.021372704 0.23121403 5.54E-05 4.256654628 -0.421393013 FESPATGILS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 FESPATGILSPR 12 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 FESPATGILS(1)PR;FESPATGILS(1)PR;FESPAT(0.007)GILS(0.993)PR;FESPATGILS(1)PR ;;; 196.02 3.91E-16 256638000 6923.3 6209.9 5482.8 5295.3 6769.8 6096 5640 3791.17 5896.8 5976.6 TRUE FALSE FALSE 6111.761269 6401.219658 5779.216753 5511.265222 6270.405341 5979.728957 5857.536689 4222.741468 5653.731408 5941.050917 1.028734033 1.077455781 0.97276001 0.927658305 1.055437065 1.006510303 0.985942853 0.710773486 0.951638269 1 12.53650244 -4.256590536 3.82094838 1.011675315 0.67913707 0.799329359 0.043452499 0.073574035 2.067759578 0.005380654 0.068834448 5.54E-05 4.256590536 -0.332538245 FLEESVSMS(ph)PEER ddPTM_HeLa_CUDC101_4h_R1 2 FLEESVSMSPEER 13 0 A0A087WTB8;Q5TBK7;P15374 A0A087WTB8 UCHL3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L3 1 0 FLEESVSMS(0.999)PEER;FLEESVSMS(1)PEER ; 245.55 1.20E-55 28979000 3662.7 2996.7 2975.9 3079.9 3196.3 3200.7 3030.8 3409.7 3389 2989.7 TRUE FALSE FALSE 3233.363858 3089.024775 3136.786156 3205.511634 2960.515317 3139.65198 3147.698971 3797.846466 3249.303986 2971.917131 1.087972415 1.039404747 1.055475646 1.078600611 0.996163482 1.056439948 1.059147625 1.277911293 1.093335999 1 11.53717817 -4.256587022 4.145013457 1.043738419 1.29826491 0.818346092 0.031829424 0.076685333 2.86843284 0.004941713 0.0581936 5.54E-05 4.256587022 0.254526491 LSVGAVSSKPT(ph)T(ph)PTIATPQTVSVPNK ddPTM_HeLa_CUDC101_4h_R1 1 LSVGAVSSKPTTPTIATPQTVSVPNK 26 1 Q9HBM6 Q9HBM6 TAF9B Transcription initiation factor TFIID subunit 9B 2 0 LS(0.001)VGAVS(0.085)S(0.197)KPT(0.765)T(0.886)PT(0.051)IAT(0.011)PQT(0.003)VS(0.001)VPNK 67.827 0.0011058 10200000 1226.5 1290.1 1232 1383 1256.5 1227.9 1164.6 1625.7 1214 1485.6 TRUE FALSE FALSE 1082.731529 1329.846452 1298.605647 1439.404718 1163.810498 1204.479853 1209.519012 1810.763117 1163.958406 1476.763585 0.733178648 0.900514114 0.879359201 0.974702202 0.788081796 0.815621312 0.819033611 1.22616994 0.788181953 1 10.52822317 -4.256586171 24.69367231 0.868123848 1.226170115 0.649082459 0.08130169 270.0161847 1373815.756 0.014414994 0.157322256 5.54E-05 4.256586171 0.358046267 HAS(ph)APSHVQPSDSEK ddPTM_HeLa_CUDC101_4h_R1 4 HASAPSHVQPSDSEK 15 0 A0A3B3IRT3;O60343-2;O60343-3;O60343 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 0 HAS(0.992)APS(0.008)HVQPSDSEK;HAS(0.94)APS(0.06)HVQPSDSEK;HAS(0.98)APS(0.02)HVQPSDSEK;HAS(0.999)APS(0.001)HVQPSDSEK ;;; 120.08 0.00059703 465933000 44627 28426.8 29891.9 30099.1 46279.5 38792.5 36165.5 24213.5 37082.6 35157.3 TRUE FALSE FALSE 39395.89071 29302.59601 31507.94653 31326.6714 42865.55349 38052.5977 37560.41545 26969.86697 35554.03953 34948.18282 1.127265784 0.838458359 0.901561798 0.896374829 1.22654599 1.088829079 1.074745879 0.771710137 1.017335857 1 15.09292982 -4.256571301 24.23294567 1.038701701 0.771709967 0.287031675 0.113162284 325.413788 1619798.631 0.016600535 0.181382569 5.54E-05 4.256571301 -0.266991734 DS(ph)RPLSPILHIVKDESPAK ddPTM_HeLa_CUDC101_4h_R1 1 DSRPLSPILHIVKDESPAK 19 2 O95487-2;O95487;O95487-3 O95487-2 SEC24B Protein transport protein Sec24B 1 0 DS(0.582)RPLS(0.418)PILHIVKDESPAK 55.688 0.01795 22440000 1911.9 1873.8 2136.5 2401.7 2487.6 2140.4 2321.3 2980.9 2372.4 2543.6 TRUE FALSE FALSE 1687.78998 1931.529557 2252.005653 2499.651707 2304.094704 2099.575436 2410.833319 3320.233607 2274.608668 2528.470554 0.667514193 0.763912221 0.890659236 0.988602261 0.911260248 0.830373695 0.953474943 1.313139123 0.899598638 1 11.30404926 -4.256487063 2.457365071 0.85209577 1.421336016 0.657716252 0.09510435 0.342922103 2.496056513 0.018889943 0.411282123 5.54E-05 4.256487063 0.569240246 RGS(ph)LPDQK ddPTM_HeLa_CUDC101_4h_R1 1 RGSLPDQK 8 1 X6RKU3;Q6P3S6 X6RKU3 FBXO42 F-box only protein 42 1 0 RGS(1)LPDQK 67.214 0.037823 8002100 3928.1 2428.4 5227.5 5912.7 3906.7 3499 3979.2 3047.2 3529.4 4414.6 TRUE FALSE FALSE 3467.654073 2503.216126 5510.114462 6153.845463 3618.510524 3432.262405 4132.679077 3394.080931 3383.916638 4388.341763 0.790196904 0.570424151 1.255625646 1.402316819 0.824573545 0.782131974 0.94174048 0.773431313 0.771115109 1 12.09946017 -4.256455303 21.71923948 0.923150905 0.773430944 0.037313833 0.232637581 277.8198019 1210368.33 0.032582148 0.342165498 5.54E-05 4.256455303 -0.149719962 T(ph)TIPEEEEEEEEAAGVVVEEELFHQQGTPR ddPTM_HeLa_CUDC101_4h_R1 1 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR 30 0 P20700 P20700 LMNB1 Lamin-B1 1 0 T(0.5)T(0.5)IPEEEEEEEEAAGVVVEEELFHQQGTPR 112.55 1.46E-10 40349000 1318.9 916.67 1000.5 841.67 1161.1 988.95 976.19 1146.4 997.82 1009.9 TRUE FALSE FALSE 1164.300541 944.9115162 1054.590056 875.9969406 1075.447966 970.0874265 1013.841975 1276.901542 956.6894373 1003.89307 1.159785416 0.941247175 1.050500385 0.872599848 1.071277408 0.966325454 1.009910324 1.271949753 0.952979422 1 9.971389893 -4.256452108 24.36697579 1.041894491 1.271949889 0.423453546 0.083678525 315.6357543 1542068.563 0.012673409 0.138201562 5.54E-05 4.256452108 0.230055398 RDS(ph)SDDWEIPDGQITVGQR ddPTM_HeLa_CUDC101_4h_R1 2 RDSSDDWEIPDGQITVGQR 19 1 H7C560;A0A2U3TZI2;A0A2R8Y8E0;P15056;A0A2R8Y679;A0A2R8Y492;A0A2R8YDP5 H7C560 BRAF Serine/threonine-protein kinase B-raf 1 0 RDS(0.581)S(0.419)DDWEIPDGQITVGQR;RDS(0.768)S(0.232)DDWEIPDGQITVGQR ; 156.2 1.35E-05 24232000 4314.9 4147 3872.9 3662.2 4779.3 4279.7 3974.2 4515.9 4966.5 4770.2 TRUE FALSE FALSE 3809.113963 4274.764155 4082.280689 3811.560345 4426.740561 4198.071853 4127.486225 5029.971802 4761.778768 4741.826638 0.803300975 0.901501569 0.860908886 0.803816891 0.933551751 0.885327991 0.870442245 1.060766701 1.004207689 1 12.2112272 -4.256379453 23.83738468 0.893519543 1.060766839 0.361580742 0.065654643 278.6968035 1312856.253 0.010655727 0.117123869 5.54E-05 4.256379453 0.167247296 VSS(ph)PAGPTEDNDLSR ddPTM_HeLa_CUDC101_4h_R1 1 VSSPAGPTEDNDLSR 15 0 Q86YC2;H3BN63 Q86YC2 PALB2 Partner and localizer of BRCA2 1 0 VS(0.066)S(0.933)PAGPT(0.001)EDNDLSR 174.24 4.63E-07 4861600 1248.9 956.11 1204.9 1150.1 1282.5 1198.2 1084.4 1513.8 1187.9 1339.6 TRUE FALSE FALSE 1102.505835 985.5666158 1270.040539 1197.006049 1187.89253 1175.346331 1126.225671 1686.124873 1138.934259 1331.632 0.827935823 0.740119354 0.953747386 0.898901535 0.892057663 0.882635992 0.845748429 1.266209338 0.855292047 1 10.37897973 -4.256351867 24.66227443 0.898498962 1.266209524 0.731947369 0.069541972 222.5083967 1078591.038 0.011671555 0.129874308 5.54E-05 4.256351867 0.367710562 LLDLPAAAS(ph)SEDIER ddPTM_HeLa_CUDC101_4h_R1 2 LLDLPAAASSEDIER 15 0 P22466 P22466 GAL Galanin peptides;Galanin;Galanin message-associated peptide 1 0 LLDLPAAAS(0.997)S(0.003)EDIER;LLDLPAAAS(0.956)S(0.044)EDIER ; 290.63 8.68E-104 35373000 4514 4066.2 3281.3 3303.1 3374.4 3220.2 2827 2002.27 4075.1 4622.8 TRUE FALSE FALSE 3984.875763 4191.474802 3458.697003 3437.814695 3125.477235 3158.78005 2936.038337 2230.200323 3907.122653 4595.30338 0.867162717 0.912121454 0.752659121 0.748114849 0.680146005 0.687393147 0.638921545 0.485321673 0.850242591 1 12.1659444 -3.805507924 0.195126653 1.034243933 3.19E-22 0.836297934 0.057543253 2.948577203 0.088304645 0.050299798 0.770135963 0.000156492 3.805507924 -1.034243933 down LGS(ph)YSGPTSVSR ddPTM_HeLa_CUDC101_4h_R1 2 LGSYSGPTSVSR 12 0 V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23;A0A2R8YFI4 V9GYZ0 PANK2 "Pantothenate kinase 2, mitochondrial" 1 0 LGS(0.992)YS(0.008)GPTSVSR;LGS(0.965)YS(0.035)GPTSVSR ; 194.06 4.69E-16 148646000 2304.1 1478.03 1631.34 1746.81 1975.52 2012.95 1703.86 2068.5 1740.11 1737.43 TRUE FALSE FALSE 2034.016891 1523.566352 1719.535175 1818.052462 1829.789825 1974.556333 1769.578451 2303.969679 1668.381929 1727.095689 1.177709437 0.882155148 0.995622412 1.052664582 1.059460594 1.143281374 1.024597804 1.334013913 0.966004339 1 10.7541323 -4.256341529 24.61589524 1.063421661 1.334014054 0.504045352 0.08487915 319.1230923 1540879.798 0.012697157 0.140487217 5.54E-05 4.256341529 0.270592394 TASGSSVTS(ph)LDGTR ddPTM_HeLa_CUDC101_4h_R1 1 TASGSSVTSLDGTR 14 0 Q92597;E5RJY1;E7ESM1;Q92597-3;Q92597-2 Q92597 NDRG1 Protein NDRG1 1 0 TASGSS(0.001)VT(0.052)S(0.946)LDGTR 150.9 0.00021149 34515000 1852.3 2000.4 1763.3 1785.8 1537.2 1321.3 1195.1 969.27 2236.1 2180.3 TRUE FALSE FALSE 1635.176202 2062.029953 1858.629332 1858.632643 1423.803819 1296.098404 1241.195407 1079.607779 2143.927012 2167.331479 0.754465211 0.951414204 0.85756579 0.857567318 0.656938651 0.59801577 0.572683699 0.49812767 0.989201252 1 11.08170411 -3.797234314 0.266896704 0.943982992 5.42E-25 0.82455508 0.07309315 4.750527203 0.21359644 0.052940008 1.534752789 0.000159502 3.797234314 -0.943982992 down GSLGS(ph)QGAKDEPEEELQK ddPTM_HeLa_CUDC101_4h_R1 2 GSLGSQGAKDEPEEELQK 18 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 GS(0.012)LGS(0.988)QGAKDEPEEELQK;GS(0.017)LGS(0.983)QGAKDEPEEELQK ; 75.064 0.007985 123203000 3031.5 2772.85 2973.9 3260.2 4075.7 4412.4 4333.9 18053.3 2734.5 4022.5 TRUE FALSE FALSE 2676.152165 2858.278222 3134.67803 3393.165048 3775.043731 4328.240822 4501.059975 20108.4147 2621.782753 3998.573991 0.66927664 0.714824392 0.783948987 0.848593788 0.944097506 1.0824461 1.125666296 5.028896487 0.655679439 1 11.96526987 -4.256320672 4.139524647 0.853142664 5.394089575 0.988564223 0.134514377 0.01955827 0.727765322 0.02238025 0.26460075 5.54E-05 4.256320672 4.54094691 up VLGAGGAGPAPATPS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 VLGAGGAGPAPATPSR 16 0 B7WPE2;Q32P44;H7C355;G3V195 B7WPE2 EML3 Echinoderm microtubule-associated protein-like 3 1 0 VLGAGGAGPAPAT(0.124)PS(0.876)R;VLGAGGAGPAPAT(0.374)PS(0.626)R ; 173.19 2.83E-12 30575000 1600.62 1066.14 1348.79 1459.52 1272.23 1475.9 1350.67 1028.15 1101.4 1372.99 TRUE FALSE FALSE 1412.99775 1098.98651 1421.709667 1519.045534 1178.380128 1447.749667 1402.765794 1145.19044 1055.999826 1364.823394 1.035297135 0.805222503 1.041680318 1.112997872 0.863393852 1.060759709 1.027800227 0.839075916 0.773726352 1 10.41449857 -4.256302845 24.27296514 1.004249436 0.839075812 0.029712496 0.114258598 389.1438755 1838827.111 0.011319724 0.12573041 5.54E-05 4.256302845 -0.165173624 ILAT(ph)PPQEDAPSVDIANIR ddPTM_HeLa_CUDC101_4h_R1 2 ILATPPQEDAPSVDIANIR 19 0 P29401;P29401-2;A0A0B4J1R6;E9PFF2 P29401 TKT Transketolase 1 0 ILAT(1)PPQEDAPSVDIANIR;ILAT(1)PPQEDAPSVDIANIR ; 154.52 0.00014114 152962000 7188.1 5429.8 4425 4822.5 5770.6 5385.7 5648.7 8366.9 4807.4 4644.8 TRUE FALSE FALSE 6345.521814 5597.085702 4664.228885 5019.182395 5344.914335 5282.976746 5866.572251 9319.354076 4609.236937 4617.172523 1.374330672 1.212232308 1.010191597 1.08706841 1.157616335 1.144201721 1.27059845 2.018411491 0.998281289 1 12.17279393 -4.256271359 3.271210317 1.161899539 2.143114111 0.844054533 0.113923774 0.125760324 2.12376402 0.020388543 0.312918718 5.54E-05 4.256271359 0.981214573 NSTGGTSVGWDS(ph)PPASPLQR ddPTM_HeLa_CUDC101_4h_R1 2 NSTGGTSVGWDSPPASPLQR 20 0 Q13424-2;Q13424 Q13424-2 SNTA1 Alpha-1-syntrophin 1 0 NSTGGTS(0.026)VGWDS(0.974)PPASPLQR;NSTGGTSVGWDS(1)PPASPLQR ; 271.42 7.63E-87 95948000 3029.4 3147.14 2917.99 2286.25 3381.8 3051.9 2776.04 3137.4 2940.88 3256.7 TRUE FALSE FALSE 2674.298324 3244.099653 3075.745366 2379.493157 3132.331351 2993.690092 2883.112793 3494.548934 2819.655682 3237.329004 0.826081724 1.002091431 0.95008736 0.735017403 0.96756658 0.924740763 0.890583808 1.079454368 0.870982121 1 11.66058828 -4.256214269 24.06100816 0.914320609 1.079454488 0.298252509 0.078514363 368.7751981 1698069.727 0.011859815 0.13231965 5.54E-05 4.256214269 0.165133879 PKQTRDS(ph)TFMEK ddPTM_HeLa_CUDC101_4h_R1 1 PKQTRDSTFMEK 12 2 A0A087WUE6;Q3T8J9-2;Q3T8J9-3;Q3T8J9;A4PB68 A0A087WUE6 GON4L GON-4-like protein 1 0 PKQTRDS(0.5)T(0.5)FMEK 43.316 0.037614 35681000 2123.6 1570.8 1342.7 1961.2 1529.2 1792.6 1636.3 2017.5 1753.8 1815.7 TRUE FALSE FALSE 1874.674827 1619.194486 1415.290423 2041.186213 1416.393963 1758.409142 1699.412639 2247.164045 1681.507622 1804.900136 1.038658478 0.897110291 0.784137801 1.130913657 0.784749214 0.974241792 0.94155494 1.245035113 0.931634714 1 10.8177033 -4.25618463 24.21005288 0.980085472 1.24503529 0.379564275 0.106714284 306.2837432 1411058.554 0.014378647 0.16080168 5.54E-05 4.25618463 0.264949818 IDVPQDLEDDLTATPLS(ph)HATVPQSPAR ddPTM_HeLa_CUDC101_4h_R1 2 IDVPQDLEDDLTATPLSHATVPQSPAR 27 0 E7EUC4;Q9NRH2 E7EUC4 SNRK SNF-related serine/threonine-protein kinase 1 0 IDVPQDLEDDLTAT(0.075)PLS(0.671)HAT(0.075)VPQS(0.179)PAR;IDVPQDLEDDLT(0.273)AT(0.208)PLS(0.277)HAT(0.065)VPQS(0.176)PAR ; 107.47 5.20E-08 21292000 2353.6 1272.54 1169.16 1054.82 2735.4 1960.13 1672.69 2120.3 1890.76 1795.71 TRUE FALSE FALSE 2077.714576 1311.745449 1232.368326 1097.840119 2533.614992 1922.743786 1737.206214 2361.666381 1812.822073 1785.029037 1.163966822 0.734859446 0.690391193 0.615026476 1.419369063 1.077149865 0.973208938 1.323040876 1.015570075 1 10.80173183 -4.256154304 23.6597708 1.016970227 1.323041159 0.145154447 0.231766814 455.3907697 2038508.255 0.033544493 0.372957349 5.54E-05 4.256154304 0.306070931 (ac)S(ph)EKSVEAAAELSAK ddPTM_HeLa_CUDC101_4h_R1 1 SEKSVEAAAELSAK 14 1 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 1 0 S(0.758)EKS(0.242)VEAAAELSAK 60.691 0.013196 142100000 2902.5 3059.7 3142.3 2641.5 4549.5 3100.9 3394.5 5111.6 3494.2 3629 TRUE FALSE FALSE 2562.27335 3153.96573 3312.182243 2749.231788 4213.892449 3041.755499 3525.427002 5693.483882 3350.167597 3607.414547 0.710279708 0.874300885 0.918159585 0.762105866 1.168119825 0.843195441 0.977272492 1.578272696 0.928689385 1 11.8167495 -4.256147581 3.129880752 0.878758106 1.689162364 0.73459471 0.120834798 0.156496641 2.303883519 0.019274101 0.312573283 5.54E-05 4.256147581 0.810404258 ASVSQT(ph)SPQSASSPR ddPTM_HeLa_CUDC101_4h_R1 1 ASVSQTSPQSASSPR 15 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 0 ASVS(0.002)QT(0.371)S(0.371)PQS(0.111)AS(0.111)S(0.034)PR 151.49 0.00092076 38117000 2392.6 2182.8 2674.6 2006.4 2380.9 2398.7 2032.1 2548.1 2410 2175 TRUE FALSE FALSE 2112.143055 2250.049481 2819.196966 2088.229664 2205.26575 2352.948794 2110.478778 2838.165404 2310.65878 2162.063003 0.976910965 1.040695612 1.303938397 0.965850515 1.019982187 1.088288727 0.976141201 1.312711702 1.068728699 1 11.07819285 -4.256115049 24.49627413 1.019797377 1.312711867 0.365777193 0.097624557 312.7907114 1439031.194 0.013468963 0.153191039 5.54E-05 4.256115049 0.29291449 GNVFSS(ph)PTAAGTPNKETAGLK ddPTM_HeLa_CUDC101_4h_R1 1 GNVFSSPTAAGTPNKETAGLK 21 1 E9PGZ1;Q05682-5;Q05682-4;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682 E9PGZ1;E7EX44;Q05682 CALD1 Caldesmon 1 0 GNVFS(0.104)S(0.855)PT(0.041)AAGTPNKETAGLK 86.179 0.00055586 67568000 1713.6 1786.2 1399.2 1577.3 1601.9 1400 1576.5 382.32 1590.8 1336.4 TRUE FALSE FALSE 1512.734406 1841.230705 1474.844984 1641.629112 1483.731028 1373.297333 1637.306133 425.8417634 1525.226551 1328.451033 1.138720485 1.385998173 1.110198982 1.235746799 1.116888008 1.033758338 1.232492649 0.320555107 1.148124027 1 10.37552934 -4.256105697 24.96777216 1.112080134 0.320554768 0.829454948 0.112051567 191.5867801 896817.9553 0.01704651 0.195301719 5.54E-05 4.256105697 -0.791525366 SHS(ph)DTSIASR ddPTM_HeLa_CUDC101_4h_R1 1 SHSDTSIASR 10 0 H7C3H3;E9PEM3;H7C357;H0Y6E6;Q92622-3;Q92622-2;Q92622 H7C3H3 KIAA0226 Run domain Beclin-1 interacting and cysteine-rich containing protein 1 0 S(0.235)HS(0.733)DT(0.031)S(0.001)IASR 74.78 0.035329 6220500 341.13 131.51 354.53 317.73 386.01 295.46 349 0 375.82 339.56 TRUE FALSE FALSE 301.1432585 135.5616672 373.6969642 330.6884027 357.5348113 289.8245928 362.4610469 0 360.3285405 337.540282 0.892169837 0.401616265 1.107118125 0.979700558 1.05923598 0.858637052 1.073830491 0 1.067512708 1 8.398915873 -4.256093806 24.96954471 0.931763011 3.95E-07 0.675217943 0.195073031 241.5546886 1128282.889 0.02523928 0.289077519 5.55E-05 4.256093806 -0.931762616 SAVCIADPLPT(ph)PSQEK ddPTM_HeLa_CUDC101_4h_R1 1 SAVCIADPLPTPSQEK 16 0 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 0 SAVCIADPLPT(0.635)PS(0.365)QEK 102.64 0.016616 4466000 2286.5 1687.2 1559.6 1613.6 1554.3 2025 2259.9 10684 1871.2 1049.1 TRUE FALSE FALSE 2018.479936 1739.180632 1643.916694 1679.409583 1439.642386 1986.376499 2347.0651 11900.22337 1794.068344 1042.859907 1.935523577 1.667703036 1.576354296 1.610388483 1.380475341 1.90473954 2.250604406 11.41114286 1.720334949 1 10.02632965 -4.256080176 3.980590172 1.520309706 12.36303671 0.991980851 0.26319042 0.020781064 0.672548646 0.052999277 0.652814777 5.55E-05 4.256080176 10.842727 up MPS(ph)LEISAPK ddPTM_HeLa_CUDC101_4h_R1 2 MPSLEISAPK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPS(1)LEISAPK;MPS(1)LEISAPK ; 136.53 0.0016154 40521000 3162 2727.5 2392.7 2319.4 2396.7 2611.5 2364.3 4320.9 2567.3 3093.2 TRUE FALSE FALSE 2791.355153 2811.531042 2522.0566 2413.995157 2219.900216 2561.689989 2455.491843 4812.77379 2461.474807 3074.801509 0.907816373 0.914378061 0.820233954 0.785089753 0.721965372 0.833123693 0.798585481 1.565230724 0.800531286 1 11.58627757 -4.256059348 24.97620998 0.900593573 1.565231007 0.835153018 0.093167043 210.4512235 976966.1222 0.015431421 0.178253763 5.55E-05 4.256059348 0.664637435 ALSGTS(ph)PDDVQPGPSVGPPSK ddPTM_HeLa_CUDC101_4h_R1 3 ALSGTSPDDVQPGPSVGPPSK 21 0 A0A075B797;M0R3B2;Q9Y314 A0A075B797 NOSIP Nitric oxide synthase-interacting protein 1 0 ALS(0.008)GT(0.058)S(0.935)PDDVQPGPSVGPPSK;ALS(0.002)GT(0.046)S(0.953)PDDVQPGPSVGPPSK;ALSGT(0.11)S(0.89)PDDVQPGPSVGPPSK ;; 219.99 5.80E-35 39524800 10883.2 9855.9 9778.5 10127.9 10040.5 9372.8 9339.4 12753.6 10361.8 11555.1 TRUE FALSE FALSE 9607.487794 10159.5486 10307.15529 10540.95954 9299.832318 9194.029456 9699.623786 14205.41827 9934.682218 11486.36975 0.836425085 0.884487337 0.897337933 0.917692863 0.809640689 0.800429523 0.844446417 1.236719571 0.864910536 1 13.48763529 -4.255915279 24.58775326 0.897122401 1.236719755 0.761482833 0.059720797 242.1019664 1077552.987 0.01097563 0.12729248 5.55E-05 4.255915279 0.339597354 HSS(ph)ETFSSTTTVTPVS(ph)PSFAHNPK ddPTM_HeLa_CUDC101_4h_R1 1 HSSETFSSTTTVTPVSPSFAHNPK 24 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 2 0 HS(0.373)S(0.414)ET(0.166)FS(0.01)S(0.011)T(0.012)T(0.014)T(0.005)VT(0.117)PVS(0.847)PS(0.032)FAHNPK 89.024 0.00014568 17064000 2134.5 1210.4 1324.7 1271.9 2621.7 1998.3 1696.3 1299.9 1713.1 1626.3 TRUE FALSE FALSE 1884.297146 1247.690989 1396.317289 1323.77358 2428.302414 1960.185757 1761.726859 1447.875362 1642.485293 1616.626695 1.165573445 0.771786704 0.863722771 0.818849264 1.502079869 1.212516014 1.089754898 0.895615151 1.015995404 1 10.65877086 -4.255888412 22.52068021 1.065423418 0.89561492 0.042886173 0.204292677 390.4688842 1583943.537 0.02885768 0.319777058 5.55E-05 4.255888412 -0.169808498 (ac)S(ph)ETAPAAPAAAPPAEK ddPTM_HeLa_CUDC101_4h_R1 1 SETAPAAPAAAPPAEK 16 0 P16403 P16403 HIST1H1C Histone H1.2 1 0 S(0.5)ET(0.5)APAAPAAAPPAEK 72.496 0.00013417 28436000 3322.3 2777.7 3386 3107 2306.7 2345.2 2496.8 4755.6 2378.7 3211.8 TRUE FALSE FALSE 2932.86503 2863.277645 3569.057402 3233.71689 2136.539337 2300.469217 2593.102412 5296.958281 2280.648979 3192.696071 0.918617045 0.896821239 1.117881979 1.012848332 0.669195968 0.72054125 0.812198329 1.659086291 0.714333256 1 11.64055951 -4.255878571 24.78607514 0.927347612 1.659086644 0.708330088 0.147629884 226.6610488 1010256.592 0.019654117 0.228317311 5.55E-05 4.255878571 0.731739032 RNS(ph)TIVLR ddPTM_HeLa_CUDC101_4h_R1 2 RNSTIVLR 8 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6;Q8NEY1-5;H0Y6F6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 RNS(0.835)T(0.165)IVLR;RNS(0.863)T(0.137)IVLR ; 123.79 0.0035963 28744000 3118.1 2774.5 3014.2 3418.5 3516.9 3046.6 2863.5 2277.7 2867.6 3108 TRUE FALSE FALSE 2752.601045 2859.979056 3177.156769 3557.921206 3257.465294 2988.491181 2973.946154 2536.984161 2749.396314 3089.513478 0.89094968 0.925705318 1.028367991 1.151612133 1.054361898 0.967301552 0.962593682 0.821159765 0.889912387 1 11.59316395 -4.255869614 3.912225912 0.974427299 0.80577929 0.287483885 0.076082446 0.309560634 9.426955577 0.011895297 0.149445368 5.55E-05 4.255869614 -0.168648009 SNS(ph)LPHSAVSNAGSK ddPTM_HeLa_CUDC101_4h_R1 1 SNSLPHSAVSNAGSK 15 0 A0A088AWN2;Q8TBZ3-4;Q8TBZ3-5;Q8TBZ3-6;Q8TBZ3;Q8TBZ3-2;Q8TBZ3-7 A0A088AWN2 WDR20 WD repeat-containing protein 20 1 0 SNS(0.853)LPHS(0.121)AVS(0.025)NAGSK 145.79 1.49E-05 0 2690.4 1680.8 1584.7 1484.4 2643.5 2212 2424.8 3201.4 2333.8 2418 TRUE FALSE FALSE 2375.03539 1732.583456 1670.373675 1544.940248 2448.494272 2169.809785 2518.325348 3565.834435 2237.599776 2403.617628 0.988108658 0.720823244 0.694941515 0.642756248 1.018670458 0.90272669 1.047722948 1.483528159 0.930930007 1 11.23099169 -4.255816206 2.444046263 0.924922096 1.616069799 0.625491038 0.139142004 0.346182836 2.478661827 0.022848189 0.502640059 5.55E-05 4.255816206 0.691147703 TDLQGS(ph)ASPSKVEGVHTPR ddPTM_HeLa_CUDC101_4h_R1 1 TDLQGSASPSKVEGVHTPR 19 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 T(0.004)DLQGS(0.903)AS(0.093)PSKVEGVHTPR 71.402 0.007189 10935000 2109.1 1790 1600.7 1662.7 2074.6 1925.3 1732.1 2185.2 2010.7 2008.6 TRUE FALSE FALSE 1861.874495 1845.147778 1687.238684 1730.512093 1921.560891 1888.57811 1798.907677 2433.954335 1927.818095 1996.652758 0.932497896 0.924120517 0.845033608 0.866706585 0.962391124 0.945872087 0.900961707 1.219017341 0.96552497 1 10.96336774 -4.255812706 24.62835471 0.944405714 1.219017487 0.769152742 0.047132809 224.2670248 981595.6157 0.007855217 0.091675919 5.55E-05 4.255812706 0.274611772 (ac)S(ph)ETAPAETATPAPVEKS(ph)PAKK ddPTM_HeLa_CUDC101_4h_R1 2 SETAPAETATPAPVEKSPAKK 21 2 P16401 P16401 HIST1H1B Histone H1.5 2 0 S(0.833)ET(0.138)APAET(0.024)AT(0.026)PAPVEKS(0.979)PAKK;S(0.9)ET(0.097)APAET(0.005)AT(0.006)PAPVEKS(0.992)PAKK ; 59.893 0.021438 19367400 4807.8 4132.3 6309.9 4929.8 4640.9 4181.6 4116.6 8691 4173.6 6070.3 TRUE FALSE FALSE 4244.236972 4259.611265 6651.03228 5130.858552 4298.550053 4101.842947 4275.378641 9680.34831 4001.562441 6034.193586 0.703364404 0.705912266 1.102223882 0.850297306 0.712365288 0.679766549 0.70852527 1.604248881 0.66314784 1 12.55894527 -4.255761695 24.94117109 0.833139935 1.604249224 0.728111983 0.147005944 274.1189007 1204123.971 0.022174615 0.2625695 5.55E-05 4.255761695 0.771109289 IASEASFSSSEGS(ph)PLSR ddPTM_HeLa_CUDC101_4h_R1 3 IASEASFSSSEGSPLSR 17 0 A0A087WX12;A0A087X032;A0A087WTH3;A0A087X251;A0A087X0T6;Q2M2Z5-5;Q2M2Z5-2;Q2M2Z5-3;Q2M2Z5-4;Q2M2Z5 A0A087WX12 KIZ Centrosomal protein kizuna 1 0 IASEASFSS(0.002)S(0.002)EGS(0.994)PLS(0.002)R;IASEAS(0.021)FS(0.126)S(0.126)S(0.199)EGS(0.526)PLS(0.003)R;IASEASFSSSEGS(0.998)PLS(0.002)R ;; 252.25 2.83E-56 30900800 3073.47 2523.39 2573.57 2873.05 3313.3 3072.61 3870.3 14076.7 3268 2955.68 TRUE FALSE FALSE 2713.202506 2601.132655 2712.704979 2990.225397 3068.88446 3014.005084 4019.578767 15679.13463 3133.291657 2938.099484 0.923454948 0.885311294 0.923285612 1.017741371 1.044513461 1.025834932 1.368088041 5.336488677 1.066434841 1 11.52066753 -4.255761569 3.708872243 0.971353118 5.830608163 0.997962125 0.058624922 0.009766135 0.24775099 0.009832982 0.130922913 5.55E-05 4.255761569 4.859255045 up RSS(ph)DSWEVWGSASTNR ddPTM_HeLa_CUDC101_4h_R1 3 RSSDSWEVWGSASTNR 16 1 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHH7;Q8N6T3-4 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 RS(0.078)S(0.898)DS(0.024)WEVWGSASTNR;RS(0.025)S(0.967)DS(0.008)WEVWGSASTNR;RS(0.22)S(0.777)DS(0.003)WEVWGSASTNR ;; 118.48 0.0011595 82909000 7143.2 6353 5700.26 5989 6750.1 6235.7 6068.7 5247.5 6326.9 6213 TRUE FALSE FALSE 6305.884924 6548.7284 6008.433298 6233.257307 6252.158571 6116.764412 6302.771792 5844.854189 6066.102504 6176.0448 1.021023184 1.060343409 0.972861029 1.009263616 1.012324032 0.990401561 1.020519118 0.946374966 0.982198592 1 12.5924675 -4.255725679 24.38236836 1.010345821 0.946374927 0.379328735 0.023290624 307.2089905 1310911.072 0.002863746 0.033273527 5.55E-05 4.255725679 -0.063970895 ELSLT(ph)PITGAKPSATGYLGSVAAK ddPTM_HeLa_CUDC101_4h_R1 1 ELSLTPITGAKPSATGYLGSVAAK 24 1 B9EGQ5;A0A669KBG4;M0QXA7;A0A669KBH9;A0A2R8YFV2;A0A669KAV7;O95785-4;O95785-3;O95785;O95785-2 B9EGQ5 WIZ Protein Wiz 1 0 ELS(0.015)LT(0.569)PIT(0.415)GAKPS(0.001)ATGYLGSVAAK 78.419 0.00028669 12808000 2993.6 2877.6 2904.2 2543.2 3082.1 2931.1 2579.3 1455.6 2997.7 3027 TRUE FALSE FALSE 2642.694746 2966.255445 3061.209837 2646.922689 2854.739623 2875.194151 2678.784465 1621.29962 2874.133537 3008.995269 0.878264839 0.985795982 1.017352825 0.87966994 0.948735165 0.955532958 0.890258782 0.538817604 0.955180477 1 11.55506612 -4.255644341 3.142087324 0.946244566 0.47451454 0.889980485 0.04335199 0.102914362 1.531894489 0.007408528 0.120022342 5.55E-05 4.255644341 -0.471730025 RNS(ph)SEASSGDFLDLK ddPTM_HeLa_CUDC101_4h_R1 8 RNSSEASSGDFLDLK 15 1 Q9UK76-3;Q9UK76;J3KSH8;J3KT51;Q9UK76-2 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 RNS(0.997)S(0.003)EASSGDFLDLK;RNS(0.799)S(0.201)EASSGDFLDLK;RNS(0.762)S(0.236)EASS(0.002)GDFLDLK;RNS(0.98)S(0.02)EASSGDFLDLK;RNS(0.796)S(0.204)EASSGDFLDLK;RNS(0.674)S(0.325)EASSGDFLDLK;RNS(0.883)S(0.117)EASSGDFLDLK;RNS(0.513)S(0.48)EAS(0.003)S(0.003)GDFLDLK ;;;;;;; 268.42 2.91E-85 5013992100 37569.7 31372.7 30081.7 30076.4 33471.9 35800.8 34693.6 40638.8 33091.7 39715.3 TRUE FALSE FALSE 33165.83672 32339.2557 31708.00769 31303.04559 31002.74462 35117.95939 36031.74377 45264.95672 31727.64612 39479.07163 0.840086541 0.819149346 0.803159912 0.792902272 0.785295686 0.889533566 0.912679612 1.146555754 0.803657351 1 15.26880044 -4.255642328 3.535727049 0.885830295 1.179231463 0.567984246 0.072058097 0.231834558 5.017383598 0.012917412 0.181708426 5.55E-05 4.255642328 0.293401168 AEGEPQEES(ph)PLKS(ph)KSQEEPKDTFEHDPSESIDEFNK ddPTM_HeLa_CUDC101_4h_R1 1 AEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNK 36 3 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 AEGEPQEES(0.696)PLKS(0.672)KS(0.303)QEEPKDT(0.303)FEHDPS(0.012)ES(0.013)IDEFNK 43.438 0.012979 9297300 1211.2 840.8 1075.5 948.94 1262 1170.8 1405.4 4186.4 1182.5 1234.1 TRUE FALSE FALSE 1069.224972 866.7040514 1133.644783 987.6418749 1168.904774 1148.468941 1459.606749 4662.962854 1133.756849 1226.759518 0.871584818 0.706498738 0.924096994 0.805081893 0.952839376 0.93618099 1.189806745 3.801040697 0.924188345 1 10.26063675 -4.255617751 3.639175735 0.913994501 4.141900428 0.991139118 0.082033015 0.02060693 0.490490876 0.013306614 0.181183097 5.55E-05 4.255617751 3.227905927 up AKGSETPGAT(ph)PGSK ddPTM_HeLa_CUDC101_4h_R1 1 AKGSETPGATPGSK 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 AKGS(0.014)ET(0.097)PGAT(0.817)PGS(0.072)K 83.243 0.025554 57845000 7686.1 4319.4 7189.4 8238.4 7888.8 6380.4 7492.8 3023.7 7642.3 7799.8 TRUE FALSE FALSE 6785.147009 4452.475594 7578.080711 8574.397561 7306.858941 6258.7045 7781.799806 3367.905786 7327.281159 7753.406443 0.87511819 0.574260569 0.977387264 1.105887796 0.942406282 0.807219968 1.00366205 0.434377562 0.94504025 1 12.92061458 -4.255603284 24.72247228 0.923196019 0.434377313 0.525120142 0.136766481 343.0873128 1453313.182 0.019241256 0.22965936 5.55E-05 4.255603284 -0.488818706 LAT(ph)QSNEITIPVTFESR ddPTM_HeLa_CUDC101_4h_R1 2 LATQSNEITIPVTFESR 17 0 P04792;C9J3N8 P04792 HSPB1 Heat shock protein beta-1 1 0 LAT(0.96)QS(0.04)NEITIPVTFESR;LAT(0.75)QS(0.25)NEITIPVTFESR ; 180.93 4.44E-10 40686000 3401.2 3363.6 2756.7 2676.99 3409.4 2972.7 2782.3 3731.3 3276.5 3207.9 TRUE FALSE FALSE 3002.516492 3467.228529 2905.735541 2786.169223 3157.895354 2916.0007 2889.614243 4156.05611 3141.441283 3188.819268 0.941576251 1.087307946 0.911226161 0.873730679 0.990302394 0.914445271 0.906170592 1.303321311 0.985142468 1 11.63880662 -4.255570463 24.90351538 0.962915567 1.303321467 0.75627294 0.058943421 231.570943 982592.5997 0.008083518 0.097465259 5.55E-05 4.255570463 0.3404059 SQVAELNDDDKDDEIVFK ddPTM_HeLa_CUDC101_4h_R1 1 SQVAELNDDDKDDEIVFK 18 1 H7BZL0;Q9BYG3;C9J808 H7BZL0 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 0 0 134.76 8.95E-05 7432700 1572.8 1363.3 1458 1152.5 1356 1584.9 1266.8 1053.7 1616.4 1393.7 FALSE FALSE TRUE 1388.438768 1405.301657 1536.82389 1199.503932 1255.970582 1554.670673 1315.6609 1173.648949 1549.771308 1385.41021 1.002186037 1.014357803 1.109291586 0.865811384 0.906569457 1.122173535 0.949654399 0.847149054 1.118637134 1 10.4360975 -6.25104453 24.98789907 1.009651243 0.947359501 0.240744566 0.084201204 1136.821509 2732771.849 0.011522996 0.01896034 5.61E-07 6.25104453 -0.062291742 SQVEEELFSVR ddPTM_HeLa_CUDC101_4h_R1 2 SQVEEELFSVR 11 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 ; ; 138.45 0.0082882 11165400 2452.5 2063.1 2450.2 2002.04 2428.04 2433.32 1991.61 2037.14 1814.71 2413.88 FALSE FALSE TRUE 2165.021668 2126.661666 2582.665223 2083.691845 2248.928327 2386.908475 2068.427065 2269.039783 1739.906886 2399.522134 0.902272014 0.886285496 1.076324818 0.868377839 0.937240084 0.994743262 0.862016247 0.945621526 0.725105579 1 11.22853141 -9.482669981 1.226566742 0.999973787 0.931369625 0 0.105175563 0.694693754 1.871333996 0.039874586 0.009772119 3.29E-10 9.482669981 -0.068604161 AQLS(ph)PGIYDDTSAR ddPTM_HeLa_CUDC101_4h_R1 2 AQLSPGIYDDTSAR 14 0 A0A088AWL3;O75376;O75376-2;E7EVK1 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 AQLS(0.942)PGIYDDT(0.058)SAR;AQLS(1)PGIYDDTSAR ; 226.67 5.07E-33 354220000 8602.5 7799 7052.3 6488.2 7512.1 6148.4 5935.3 4276 7739.1 7524.7 TRUE FALSE FALSE 7594.127991 8039.277946 7433.56867 6752.81684 6957.947349 6031.129514 6164.226509 4762.762556 7420.091022 7479.94275 1.015265523 1.074778005 0.993800209 0.90278991 0.930213985 0.806306908 0.824100761 0.636737835 0.991998371 1 12.86881151 -4.255570304 0.553785181 1.014346814 0.415800556 0.894926952 0.040064316 0.80525161 0.164807332 0.007654949 0.309877129 5.55E-05 4.255570304 -0.598546258 SDS(ph)SQPMLLR ddPTM_HeLa_CUDC101_4h_R1 1 SDSSQPMLLR 10 0 A0A075B6G3;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A087WV90;P11532-11;P11532;P11532-8;P11532-14;P11532-6;P11532-15;P11532-5;P11532-7;P11532-12;P11532-2;P11532-17;P11532-3;A0A5H1ZRP7;A0A5H1ZRP9;A0A5H1ZRQ1;A0A5H1ZRQ8;H0Y304;P11532-16;P11532-9;P11532-13;A0A5H1ZRR9 A0A075B6G3 DMD Dystrophin 1 0 S(0.005)DS(0.588)S(0.407)QPMLLR 114.24 0.0067876 14448000 2397.6 1910.4 2047.6 1819.6 1694.1 2294.3 1818.7 2464.3 1905 1985.1 TRUE FALSE FALSE 2116.556963 1969.25716 2158.29945 1893.811153 1569.129618 2250.54005 1888.847868 2744.825951 1826.475094 1973.292537 1.072601717 0.997955003 1.093755441 0.959721439 0.795183476 1.140499955 0.957206209 1.390987854 0.92559773 1 10.94638913 -4.255543509 24.59792214 1.018781845 1.390988058 0.60229016 0.09490977 265.6489639 1108262.371 0.011986169 0.143753598 5.55E-05 4.255543509 0.372206213 AKDQNES(ph)LDEEMFYK ddPTM_HeLa_CUDC101_4h_R1 4 AKDQNESLDEEMFYK 15 1 Q96AC1;Q96AC1-3;A0A0U1RRM8;H0YJ34 Q96AC1 FERMT2 Fermitin family homolog 2 1 0 AKDQNES(1)LDEEMFYK;AKDQNES(1)LDEEMFYK;AKDQNES(1)LDEEMFYK;AKDQNES(1)LDEEMFYK ;;; 116.09 0.00078347 251742000 16844.3 13749.3 13578.5 12525.5 15752.2 14746.8 13959.3 10225.7 15717.6 13188.9 TRUE FALSE FALSE 14869.83669 14172.89964 14312.59478 13036.34403 14590.19159 14465.52936 14497.71488 11389.75235 15069.71388 13110.45184 1.134197118 1.081038229 1.091693479 0.994347425 1.112867182 1.103358568 1.105813519 0.868753609 1.149442755 1 13.67842979 -4.255387579 24.86561247 1.071103471 0.868753514 0.612698495 0.050573791 378.3094062 1554348.793 0.007814451 0.094301564 5.55E-05 4.255387579 -0.202349957 HGGS(ph)PQPLAT(ph)TPLSQEPVNPPS(ph)EASPTR ddPTM_HeLa_CUDC101_4h_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 HGGS(0.977)PQPLAT(0.73)T(0.098)PLS(0.204)QEPVNPPS(0.761)EAS(0.173)PT(0.058)R 69.154 0.0001365 20829000 623.55 423.67 244.59 413.13 426.12 559.92 570.45 1531.4 698.17 543.58 TRUE FALSE FALSE 550.4584142 436.7227705 257.8132752 429.9792271 394.6859766 549.2404589 592.4524476 1705.728386 669.3911371 540.346762 1.018713265 0.808226867 0.477125604 0.795746838 0.730430909 1.01645924 1.096430088 3.156729171 1.238817708 1 9.077741729 -4.255370664 3.895470127 0.924642135 3.384130791 0.92135911 0.1975745 0.04990853 1.496093204 0.02764243 0.350502128 5.55E-05 4.255370664 2.459488656 up SRDEDNDEDEERLEEEEQNEEEEVDN ddPTM_HeLa_CUDC101_4h_R1 1 SRDEDNDEDEERLEEEEQNEEEEVDN 26 2 Q9NRF9 Q9NRF9 POLE3 DNA polymerase epsilon subunit 3 0 0 80.412 0.00029746 29164000 763.25 560.83 682.92 613.15 473.41 533.16 506.66 681.45 692.31 764.32 FALSE FALSE TRUE 673.782992 578.1085076 719.8407209 638.1569073 438.4874875 522.9908613 526.2020459 759.0235135 663.7726888 759.7737906 0.886820525 0.760895565 0.947440843 0.839930141 0.577128999 0.688350754 0.692577254 0.999012499 0.873645152 1 9.569426135 -7.494899286 0.518228591 0.989441319 0.746912649 0.194066719 0.121788785 0.623333717 0.40412309 0.049522509 0.047965923 3.20E-08 7.494899286 -0.24252867 TLS(ph)GSGSGSGSSYSGSSSR ddPTM_HeLa_CUDC101_4h_R1 1 TLSGSGSGSGSSYSGSSSR 19 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 T(0.044)LS(0.477)GS(0.477)GS(0.002)GSGSSYSGSSSR 276.3 1.50E-125 0 1025.4 922.46 990.58 1137.5 1160.4 1127.1 1082.3 395.77 865.46 1075 TRUE FALSE FALSE 905.2041664 950.8798992 1044.133751 1183.892167 1074.799604 1105.602445 1124.044674 440.822857 829.7853725 1068.605852 0.84708891 0.889832203 0.977099039 1.107884787 1.005796105 1.034621365 1.051879579 0.41252147 0.776512098 1 10.06151411 -4.255369274 24.95831179 0.95773622 0.412521225 0.750219902 0.095648196 252.1762459 1036837.145 0.013145627 0.160476798 5.55E-05 4.255369274 -0.545214995 AASSSSPGSPVASS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 4 AASSSSPGSPVASSPSR 17 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 AASSSSPGSPVAS(0.23)S(0.767)PS(0.004)R;AASSSSPGSPVAS(0.054)S(0.936)PS(0.009)R;AASSSSPGSPVAS(0.032)S(0.948)PS(0.02)R;AASSSSPGSPVAS(0.078)S(0.921)PS(0.002)R ;;; 191.15 1.60E-11 115673600 13480.3 10892.2 9835 10806.3 12493 11028.3 10393.4 12771.5 11128.4 11144.2 TRUE FALSE FALSE 11900.15967 11227.77577 10366.70985 11247.02762 11571.41628 10817.95355 10794.27692 14225.35594 10669.68264 11077.9138 1.074223891 1.013527996 0.93579983 1.015265854 1.044548323 0.976533465 0.974396183 1.28411867 0.963149094 1 13.4353986 -4.255353205 24.91215522 1.020032007 1.284118792 0.790487259 0.042789709 246.0521318 1007120.182 0.006341818 0.077612249 5.55E-05 4.255353205 0.264086785 SREDMDTPSSVRVTRGSVDGLGLNVGS ddPTM_HeLa_CUDC101_4h_R1 1 SREDMDTPSSVRVTRGSVDGLGLNVGS 27 3 I3L2P9 I3L2P9 GRAP 0 0 40.533 0.026312 7532400 3337.5 2707.6 2317.5 2128.7 1919 2259.5 2108.8 2569.7 1630 1430.2 FALSE FALSE TRUE 2946.283309 2791.017947 2442.79106 2215.517587 1777.439193 2216.403802 2190.137122 2862.224261 1562.81071 1421.693107 2.072376447 1.963164858 1.718226703 1.558365569 1.25022706 1.558988921 1.540513288 2.013250432 1.099260243 1 10.47339436 -9.509642265 1.280529503 1.002783976 1.730947715 0.541950771 0.241637629 0.305289357 0.901488505 0.191372316 0.046955197 3.09E-10 9.509642265 0.72816374 TCS(ph)PESQQIYGDIK ddPTM_HeLa_CUDC101_4h_R1 2 TCSPESQQIYGDIK 14 0 Q4VC44-2;Q4VC44;Q4VC44-4;Q4VC44-3;I3L287;J3KNW1;Q4VC44-5 Q4VC44-2 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 1 0 T(0.036)CS(0.95)PES(0.011)QQIY(0.003)GDIK;T(0.034)CS(0.964)PES(0.002)QQIYGDIK ; 112.24 0.0030338 11208700 6106 5224 5242.5 5074.9 4034.4 4311.5 4059 2983.9 5021.6 2105.59 TRUE FALSE FALSE 5390.263936 5384.945248 5525.925408 5281.876358 3736.79035 4229.265321 4215.55699 3323.575115 4814.607523 2093.065857 2.575295908 2.572754808 2.640110625 2.523511785 1.785319051 2.020607859 2.014058457 1.587898013 2.300265664 1 11.03140199 -4.255333648 21.0328457 1.959445305 1.587896525 0 0.510943646 295.5019804 1017621.712 0.098010532 1.104303718 5.55E-05 4.255333648 -0.37154878 EAAAQEAGADTPGKGEPPAPKS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 1 EAAAQEAGADTPGKGEPPAPKSPPK 25 2 O95466;O95466-2;O95466-3;K7ERL1;K7EJE6;K7EK60 O95466 FMNL1 Formin-like protein 1 1 0 EAAAQEAGADT(0.021)PGKGEPPAPKS(0.979)PPK 41.648 0.031953 8853900 2528.9 2836.7 2710.2 2381.4 2125.8 2434.9 2307.5 2564.6 2560.9 2637.9 TRUE FALSE FALSE 2232.466176 2924.095365 2856.72161 2478.523785 1968.983969 2388.458339 2396.501048 2856.543698 2455.338618 2622.209653 0.8513683 1.115126459 1.089432954 0.945204279 0.750887316 0.910857122 0.913924272 1.089365106 0.936362436 1 11.35656732 -4.255327938 23.39364859 0.938540579 1.08936527 0.15028632 0.100976525 437.1634391 1673267.329 0.015210252 0.18205553 5.55E-05 4.255327938 0.150824691 ASAS(ph)PSTSSTSSRPK ddPTM_HeLa_CUDC101_4h_R1 2 ASASPSTSSTSSRPK 15 1 J3KP75;F5H858;F6TH74;O75167-5;O75167-2;O75167;O75167-4 J3KP75 PHACTR2 Phosphatase and actin regulator;Phosphatase and actin regulator 2 1 0 ASAS(0.907)PS(0.089)T(0.003)SSTSSRPK;AS(0.028)AS(0.955)PS(0.017)TSSTSSRPK ; 193.98 1.94E-15 18874100 1824.95 1733.78 1523.8 1752.08 1490.16 1741.9 1489.88 1783.04 1815.03 1581.43 TRUE FALSE FALSE 1611.032127 1787.195707 1606.181237 1823.537396 1380.233866 1708.67616 1547.345171 1986.014066 1740.213695 1572.023584 1.024814223 1.136875887 1.021728461 1.159993663 0.877998193 1.086927815 0.984301499 1.263348773 1.10698956 1 10.61840715 -4.255315753 24.86291001 1.025560942 1.263348887 0.380626798 0.080625929 408.7235652 1659433.744 0.009579016 0.117823527 5.56E-05 4.255315753 0.237787944 LKPGGVGAPSSSS(ph)PSPSPSARPGPPPSEEAMDFR ddPTM_HeLa_CUDC101_4h_R1 1 LKPGGVGAPSSSSPSPSPSARPGPPPSEEAMDFR 34 2 Q92797 Q92797 SYMPK Symplekin 1 0 LKPGGVGAPS(0.005)S(0.016)S(0.18)S(0.548)PS(0.149)PS(0.043)PS(0.043)ARPGPPPS(0.016)EEAMDFR 49.967 0.0064809 18101000 808.65 448.73 656.35 559.9 672.31 669.38 624.61 395.1 611.42 542.12 TRUE FALSE FALSE 713.8612728 462.5548394 691.8342664 582.7351421 622.7150307 656.6126918 648.7014169 440.076587 586.2170088 538.8954461 1.324674903 0.858338742 1.283800543 1.081351023 1.155539605 1.218441715 1.203761178 0.816627029 1.087812141 1 9.073861585 -4.255273215 24.22620825 1.147421973 0.816626799 0.34344305 0.130966633 425.8212659 1672931.461 0.020005796 0.243296068 5.56E-05 4.255273215 -0.330795174 AFGPGLQGGSAGS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 4 AFGPGLQGGSAGSPAR 16 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 1 0 AFGPGLQGGS(0.002)AGS(0.998)PAR;AFGPGLQGGS(0.009)AGS(0.991)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR ;;; 179.97 5.81E-08 1868997000 3616.81 3536.15 3274.66 3646.84 3484.96 2820.78 3190.4 2706.59 3044.7 3251.88 TRUE FALSE FALSE 3192.853015 3645.09459 3451.698025 3795.573898 3227.881444 2766.978321 3313.454797 3014.697265 2919.196177 3232.537673 0.987723373 1.127626329 1.067798236 1.174177777 0.998559575 0.85597713 1.025032074 0.932610095 0.903066406 1 11.65845147 -4.25526804 22.22981907 1.01251122 0.93260992 0.070896304 0.089469379 333.5318107 1201236.872 0.011774795 0.137545982 5.56E-05 4.25526804 -0.079901299 SRLGDLYEEEMR ddPTM_HeLa_CUDC101_4h_R1 1 SRLGDLYEEEMR 12 1 P08670;B0YJC4 P08670 VIM Vimentin 0 0 116.19 0.0052235 8154300 2207.3 2900.4 2608.2 2831.7 3094.8 3036.5 2887.3 4142.3 3082 312.6 FALSE FALSE TRUE 1948.56364 2989.757886 2749.207181 2947.188966 2866.50277 2978.583822 2998.664128 4613.842688 2954.958656 310.7406413 6.270707404 9.621393178 8.847272664 9.484401375 9.224743689 9.585433721 9.650054514 14.84788945 9.509405153 1 8.279567131 -7.838745012 0.324238073 8.62E-17 12.01413163 0.202111026 2.921647504 0.350756531 0.108594722 1.670226571 1.112212721 1.45E-08 7.838745012 12.01413163 AGS(ph)SPAQGAQNEPPR ddPTM_HeLa_CUDC101_4h_R1 1 AGSSPAQGAQNEPPR 15 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 AGS(0.892)S(0.108)PAQGAQNEPPR 125.73 0.00078958 10098000 1205.2 1268.2 1347.9 1211.8 1213.6 1236.5 1162.1 1174.2 1342.2 1332.6 TRUE FALSE FALSE 1063.928283 1307.271739 1420.771551 1261.222442 1124.075146 1212.915823 1206.922586 1307.866182 1286.873948 1324.673636 0.803162571 0.986863257 1.072544597 0.952100508 0.848567613 0.9156337 0.911109388 0.987312004 0.971464905 1 10.37142125 -4.255196339 22.25812329 0.921551552 0.987312137 0 0.074919908 445.2065999 1587048.974 0.012695094 0.147910222 5.56E-05 4.255196339 0.065760585 TIET(ph)SPSLSR ddPTM_HeLa_CUDC101_4h_R1 1 TIETSPSLSR 10 0 H3BP78;Q9NVI1-2;Q9NVI1-1;Q9NVI1;F8W7R3 H3BP78 FANCI Fanconi anemia group I protein 1 0 T(0.199)IET(0.397)S(0.397)PS(0.006)LSR 118.23 0.025508 108930000 7255.5 5582.5 5280.6 5427.3 6085.2 5962.6 5849.2 3887.2 5962.9 5364.5 TRUE FALSE FALSE 6405.021289 5754.490208 5566.085209 5648.648753 5636.306919 5848.873339 6074.805603 4329.703135 5717.106738 5332.591715 1.20110851 1.079116969 1.043786119 1.059268936 1.05695452 1.096816267 1.139184458 0.81193224 1.072106593 1 12.38062116 -4.255133955 24.812239 1.089687964 0.811932102 0.705430884 0.05242501 380.1021255 1495679.746 0.010409405 0.129641109 5.56E-05 4.255133955 -0.277755862 KQPPVSPGTALVGS(ph)QKEPSEVPTPK ddPTM_HeLa_CUDC101_4h_R1 2 KQPPVSPGTALVGSQKEPSEVPTPK 25 2 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 KQPPVSPGTALVGS(0.997)QKEPS(0.003)EVPTPK;KQPPVSPGTALVGS(0.73)QKEPS(0.249)EVPT(0.021)PK ; 96.579 3.01E-06 1050250000 2798.5 2798.2 2973.3 3200.3 3642.8 4283.6 5603.8 31486 3253.1 3670.9 TRUE FALSE FALSE 2470.464072 2884.409225 3134.045592 3330.822067 3374.077901 4201.897467 5819.940443 35070.23897 3119.005841 3649.065324 0.677012838 0.790451518 0.858862562 0.912787734 0.924641683 1.151499657 1.594912649 9.610745728 0.854741027 1 11.83331126 -4.25510176 3.80547535 0.876852133 10.55108538 0.997770273 0.122871075 0.012017307 0.332251403 0.025077039 0.3266993 5.56E-05 4.25510176 9.674233245 up STSQGSINS(ph)PVYSR ddPTM_HeLa_CUDC101_4h_R1 1 STSQGSINSPVYSR 14 0 O14639-3;O14639-5;J3QSX6;O14639-4;H0Y7N6;F6XFR5;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639;A0A494C1P1;A0A494C1G0 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 1 0 STSQGS(0.211)INS(0.788)PVYS(0.001)R 239.19 1.01E-43 102080000 1778.4 1584.3 1647.9 1618.4 1802.9 1634.2 1642.1 1020.2 1885.7 1609.3 TRUE FALSE FALSE 1569.938648 1633.110405 1736.990459 1684.405347 1669.903659 1603.030358 1705.436347 1136.335444 1807.970648 1599.727812 0.981378605 1.020867671 1.085803751 1.052932464 1.043867367 1.002064442 1.066079076 0.710330492 1.130173917 1 10.64361074 -4.255039876 24.91595621 1.011419916 0.710330351 0.773001996 0.051583822 209.3574462 815093.3127 0.005733977 0.072375221 5.56E-05 4.255039876 -0.301089565 TQS(ph)LPVTEK ddPTM_HeLa_CUDC101_4h_R1 1 TQSLPVTEK 9 0 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 0 T(0.002)QS(0.997)LPVT(0.001)EK 103.43 0.014524 26575000 3716.7 3781.7 3009.6 3362 2684.8 2622.7 2256.1 5914.5 3084.1 2724.9 TRUE FALSE FALSE 3281.03406 3898.209695 3172.30808 3499.116892 2486.747653 2572.676367 2343.118533 6587.782773 2956.972093 2708.692174 1.211298239 1.439148284 1.17115858 1.291810463 0.91806211 0.949785432 0.865036845 2.432089861 1.091660441 1 11.40338073 -4.254991381 24.99775863 1.107972302 2.432090455 0.845402883 0.170344822 223.1663494 865153.4583 0.025362874 0.322239635 5.56E-05 4.254991381 1.324118153 (ac)SET(ph)APAAPAAAPPAEK ddPTM_HeLa_CUDC101_4h_R1 1 SETAPAAPAAAPPAEK 16 0 P16403 P16403 HIST1H1C Histone H1.2 1 0 S(0.437)ET(0.563)APAAPAAAPPAEK 41.644 0.0052298 25220000 7654.2 6813.4 8766.2 7663.5 6376 6523 6223.1 12167 6427.4 8801.4 TRUE FALSE FALSE 6756.986279 7023.312778 9240.127288 7976.050654 5905.655183 6398.584643 6463.127052 13552.0421 6162.459852 8749.048881 0.772310953 0.802751576 1.056129348 0.911647742 0.675005393 0.731346313 0.73872339 1.548973184 0.704357689 1 13.09491047 -4.254977934 24.80628931 0.863754812 1.548973528 0.737133196 0.128119675 291.9134852 1120658.16 0.019008764 0.241564741 5.56E-05 4.254977934 0.685218716 GT(ph)FSDQELDAQSLDDEDDNMHHAVYPAVNR ddPTM_HeLa_CUDC101_4h_R1 1 GTFSDQELDAQSLDDEDDNMHHAVYPAVNR 30 0 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 GT(0.598)FS(0.402)DQELDAQSLDDEDDNMHHAVYPAVNR 103.63 7.21E-10 7876900 939.03 899.14 774.85 534.69 949.78 863.52 749 1119 1190.8 933.86 TRUE FALSE FALSE 828.9583269 926.8414377 816.7407348 556.4969693 879.7166216 847.0497947 777.8891809 1246.382437 1141.71472 928.3053592 0.892980223 0.998423017 0.879819045 0.5994762 0.94765867 0.912468927 0.837966918 1.342642725 1.229891338 1 9.858455637 -4.254884482 24.37836285 0.915648802 1.342643002 0.417539303 0.148844568 316.1321624 1175683.809 0.016126374 0.203726884 5.56E-05 4.254884482 0.4269942 GLS(ph)PADVAQEHLK ddPTM_HeLa_CUDC101_4h_R1 1 GLSPADVAQEHLK 13 0 P10070 P10070 GLI2 Zinc finger protein GLI2 1 0 GLS(1)PADVAQEHLK 137.17 0.00054695 6717000 3265.5 3230.6 3119.7 2915.5 3683.4 3421.8 3286.6 1758.3 3076.2 3349.6 TRUE FALSE FALSE 2882.72304 3330.130957 3288.360419 3034.406692 3411.68292 3356.534866 3413.365263 1958.457765 2949.397734 3329.67643 0.86576672 1.000136508 0.987591584 0.911321792 1.024628967 1.00806638 1.025134224 0.588182607 0.885791096 1 11.70116627 -4.254848239 24.87522972 0.95643641 0.588182429 0.800249456 0.056621984 275.4844908 1039659.951 0.009038765 0.116115306 5.56E-05 4.254848239 -0.368253981 SRNTDEMVELR ddPTM_HeLa_CUDC101_4h_R1 1 SRNTDEMVELR 11 1 P61978;P61978-2;P61978-3;Q5T6W2;S4R457 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 115.33 0.0067966 6086900 1807.7 1628.3 1868.2 1995.9 2169.5 2057.7 1790.8 2363.2 2188.2 832.15 FALSE FALSE TRUE 1595.804146 1678.465993 1969.200543 2077.301429 2009.460307 2018.452801 1859.871756 2632.217136 2098.00147 827.2003348 1.929162839 2.029092497 2.380560621 2.511243458 2.429230529 2.440101528 2.248393379 3.182079389 2.536267675 1 9.692092959 -8.822723004 0.184497866 1.20E-12 3.064556823 0.007237815 0.528647086 1.626684151 0.11853584 1.414326134 0.497930225 1.50E-09 8.822723004 3.064556823 ETIHLPASS(ph)PHPPPFP ddPTM_HeLa_CUDC101_4h_R1 1 ETIHLPASSPHPPPFP 16 0 Q5SZC3;Q5SZC6;Q9Y2T3-3 Q5SZC3 GDA 1 0 ETIHLPAS(0.107)S(0.893)PHPPPFP 64.327 0.030004 10162000 5591.4 4655.9 4694 4710.8 5779.6 5163.8 4642.9 5229.5 5160.5 5044.8 TRUE FALSE FALSE 4935.984568 4799.34276 4947.771839 4902.926786 5353.250423 5065.309118 4821.978208 5824.805142 4947.782006 5014.793305 0.984284749 0.957037004 0.986635248 0.977692696 1.067491738 1.010073359 0.961550739 1.161524471 0.986637276 1 12.29197452 -4.254802959 24.99338423 0.993291631 1.161524547 0.750293746 0.029269792 285.221126 1074141.396 0.003991689 0.051365871 5.56E-05 4.254802959 0.168232917 RSELSQDAEPAGS(ph)QETK ddPTM_HeLa_CUDC101_4h_R1 2 RSELSQDAEPAGSQETK 17 1 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 RSELSQDAEPAGS(0.966)QET(0.034)K;RSELSQDAEPAGS(0.998)QET(0.002)K ; 136.02 3.69E-05 11237000 2993.7 2538.2 2801.2 2622.9 3132.6 3666.9 3758.3 13417.4 2966.6 3424 TRUE FALSE FALSE 2642.783024 2616.398933 2952.641345 2729.873199 2901.514339 3596.959992 3903.25889 14944.78258 2844.315492 3403.633896 0.776459251 0.768707509 0.867496751 0.80204666 0.852475451 1.056799909 1.146791638 4.390831399 0.835670222 1 11.73286015 -4.254784351 3.902847224 0.884888643 4.748586607 0.99277007 0.089615272 0.018477288 0.556944048 0.016048169 0.204242945 5.56E-05 4.254784351 3.863697964 up SRT(ph)PPSAPSQSR ddPTM_HeLa_CUDC101_4h_R1 1 SRTPPSAPSQSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.01)RT(0.989)PPSAPSQSR 100.11 0.013483 500290000 2839.6 2793.4 2387.7 2711.9 2743.7 2611.7 2290.4 3004.4 2680.2 2456 TRUE FALSE FALSE 2506.746393 2879.461343 2516.786284 2822.503004 2541.302717 2561.886174 2378.741495 3346.408752 2569.721022 2441.391603 1.026769482 1.179434442 1.030881847 1.156104166 1.040923838 1.049354872 0.974338362 1.370697248 1.052564045 1 11.25348801 -4.254761293 24.81039223 1.037194373 1.370697418 0.679405008 0.063444956 301.5662328 1120344.045 0.009102944 0.118345509 5.56E-05 4.254761293 0.333503045 QPCPS(ph)ESDIITEEDK ddPTM_HeLa_CUDC101_4h_R1 2 QPCPSESDIITEEDK 15 0 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QPCPS(0.997)ES(0.003)DIITEEDK;QPCPS(0.95)ES(0.05)DIITEEDK ; 148.33 0.00025799 9944200 3643.8 3452.6 3559.2 3180.9 3372.7 3863.5 3095.9 4114.1 3173.2 3620.2 TRUE FALSE FALSE 3216.679288 3558.970514 3751.621118 3310.630851 3123.90264 3789.810175 3215.3099 4582.432514 3042.399353 3598.666889 0.893853026 0.988969144 1.042503025 0.91996035 0.868072188 1.053115026 0.893472499 1.27336946 0.845423999 1 11.81324685 -4.254703331 24.90560883 0.954337514 1.273369614 0.664171876 0.069758976 320.7085277 1185742.75 0.008648207 0.113405046 5.56E-05 4.254703331 0.319032099 RGS(ph)GDTSISIDTEASIR ddPTM_HeLa_CUDC101_4h_R1 7 RGSGDTSISIDTEASIR 17 1 Q32MZ4-3;Q32MZ4-2;Q32MZ4;Q32MZ4-4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 RGS(0.984)GDT(0.012)S(0.004)ISIDTEASIR;RGS(0.963)GDT(0.028)S(0.008)IS(0.001)IDTEASIR;RGS(0.95)GDT(0.034)S(0.015)IS(0.002)IDTEASIR;RGS(0.417)GDT(0.417)S(0.136)IS(0.028)IDT(0.003)EASIR;RGS(0.987)GDT(0.01)S(0.003)ISIDTEASIR;RGS(0.889)GDT(0.055)S(0.055)IS(0.001)IDTEASIR;RGS(0.999)GDT(0.001)SISIDTEASIR ;;;;;; 120.08 0.00063557 46817730 4777.32 4486.423 4071.12 4523.68 4853.87 4346.7 4262.733 5766.89 4024.17 3994.02 TRUE FALSE FALSE 4217.329792 4624.644375 4291.217062 4708.175223 4495.80968 4263.79394 4427.14804 6423.369447 3858.292009 3970.263391 1.062229222 1.164820547 1.08083939 1.185859667 1.132370636 1.073932261 1.115076659 1.617869852 0.971797493 1 11.95501901 -4.254684019 3.666317546 1.064719651 1.682721925 0.855275525 0.065180889 0.081017131 1.973567321 0.010076853 0.137214558 5.56E-05 4.254684019 0.618002274 NSSSES(ph)AIVPK ddPTM_HeLa_CUDC101_4h_R1 1 NSSSESAIVPK 11 0 Q5THJ4-2;Q5THJ4;H3BLS7;A0A2R8YD87 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 NS(0.017)S(0.028)S(0.001)ES(0.954)AIVPK 125.82 0.0029839 30160000 2967.3 2794.6 2901.5 3228.8 2965.5 2479.4 2833.1 1768.8 3022.6 2822.9 TRUE FALSE FALSE 2619.477592 2880.698314 3058.363867 3360.48442 2746.740973 2432.109576 2942.373616 1970.153042 2898.007149 2806.109265 0.933490946 1.026580949 1.089894789 1.197560074 0.9788432 0.866719485 1.048559888 0.702094201 1.032749218 1 11.45435547 -4.254622827 24.57639858 0.993115179 0.70209403 0.523846135 0.087584792 432.5764631 1559558.834 0.012788491 0.16594051 5.56E-05 4.254622827 -0.291021149 SAGEALGSSGT(ph)PPVR ddPTM_HeLa_CUDC101_4h_R1 2 SAGEALGSSGTPPVR 15 0 A0A087WU73;W0Z7M9;B0QY83;A0A499FIJ6;Q969V6;E7ER32;A0A087X287;A0A494BZX7 A0A087WU73 MKL1;mkl1 MKL/myocardin-like protein 1 1 0 SAGEALGSS(0.001)GT(0.999)PPVR;SAGEALGS(0.001)S(0.006)GT(0.992)PPVR ; 167.92 1.88E-05 18333200 2655.6 2386.3 2436.9 2622.7 3164.8 2374.8 2242.7 1296.27 2503.6 2244.61 TRUE FALSE FALSE 2344.314594 2459.819075 2568.646185 2729.665042 2931.339009 2329.504647 2329.20169 1443.832137 2400.400548 2231.25896 1.050668988 1.102435494 1.151209354 1.223374378 1.313760107 1.044031504 1.043895725 0.647093037 1.07580545 1 11.12364225 -4.254467828 3.932378338 1.074464688 0.604105099 0.662264723 0.09652609 0.149291026 4.61663485 0.015946813 0.202022523 5.57E-05 4.254467828 -0.470359589 EFT(ph)ESQLQEGK ddPTM_HeLa_CUDC101_4h_R1 1 EFTESQLQEGK 11 0 Q01995;H0YCU9 Q01995 TAGLN Transgelin 1 0 EFT(0.946)ES(0.054)QLQEGK 171.99 3.57E-06 5160900 3450.1 2769.2 2438.9 2429.7 3317.5 3243.5 2678.8 3790.1 3123.7 3234.7 TRUE FALSE FALSE 3045.684508 2854.51577 2570.754311 2528.793668 3072.774634 3181.635642 2782.122213 4221.549664 2994.939764 3215.459861 0.947200289 0.887747288 0.799498182 0.786448526 0.95562525 0.989480752 0.865233072 1.312891421 0.9314188 1 11.65080936 -4.254465132 24.76329526 0.938675073 1.312891619 0.70852397 0.075686929 368.223335 1307403.576 0.012100918 0.160895375 5.57E-05 4.254465132 0.374216546 VAPGPSSGSTPGQVPGSSALSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 VAPGPSSGSTPGQVPGSSALSSPR 24 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-5 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 VAPGPSSGSTPGQVPGSSALS(0.365)S(0.635)PR 187.57 4.21E-15 13979000 433.14 437.46 375.12 354.06 476.58 334.29 376.8 283.41 388.1 357.94 TRUE FALSE FALSE 382.3679858 450.9376241 395.4001219 368.5000972 441.4236429 327.9139752 391.3333022 315.6722488 372.1023537 355.810957 1.07463803 1.267351708 1.111264603 1.03566259 1.240612843 0.921596058 1.099834883 0.887190916 1.045786664 1 8.474967128 -4.254416711 23.83967938 1.065815674 0.887190756 0.239845912 0.100455435 528.2798546 1793246.79 0.013948766 0.182081974 5.57E-05 4.254416711 -0.178624918 NPQNSSQS(ph)ADGLR ddPTM_HeLa_CUDC101_4h_R1 2 NPQNSSQSADGLR 13 0 P0DN76;Q01081 P0DN76 U2AF1 Splicing factor U2AF 35 kDa subunit 1 0 NPQNS(0.042)S(0.042)QS(0.917)ADGLR;NPQNS(0.053)S(0.053)QS(0.894)ADGLR ; 135.55 0.00090841 15485600 1647.75 1234.87 1268.31 1312.57 1673.69 1537.59 1269.18 1934.51 1394.59 1544.62 TRUE FALSE FALSE 1454.603243 1272.914881 1336.878675 1366.102278 1550.225223 1508.263033 1318.132698 2154.726799 1337.10441 1535.432532 0.947357317 0.829026906 0.870685392 0.889718206 1.009634218 0.982304987 0.858476469 1.403335382 0.870832409 1 10.5844294 -4.254399265 24.99095058 0.949222331 1.403335593 0.815979321 0.067721081 278.8503342 989836.1704 0.009653894 0.129748926 5.57E-05 4.254399265 0.454113262 S(ph)QVNGEAGSYEMTNQHVK ddPTM_HeLa_CUDC101_4h_R1 1 SQVNGEAGSYEMTNQHVK 18 0 Q05D32;H0YMH7;Q05D32-2 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 S(0.968)QVNGEAGS(0.001)YEMT(0.03)NQHVK 224.36 3.91E-33 6469600 1165.2 876.74 1067.6 1063.8 920.35 951.94 830.72 554.28 940.74 755.03 TRUE FALSE FALSE 1028.617022 903.7513202 1125.317685 1107.186362 852.4576141 933.7833305 862.7611487 617.3769947 901.962299 750.539048 1.37050434 1.204136311 1.499345955 1.47518822 1.135793822 1.244150232 1.149522002 0.822578114 1.201752662 1 9.551783322 -4.254373447 2.655410969 1.226072698 0.737142101 0.431787961 0.147797386 0.489543792 4.415731032 0.026442526 0.531630849 5.57E-05 4.254373447 -0.488930597 KIS(ph)GDMRGIQYK ddPTM_HeLa_CUDC101_4h_R1 1 KISGDMRGIQYK 12 2 Q8IWI9;Q8IWI9-3 Q8IWI9 MGA MAX gene-associated protein 1 0 KIS(1)GDMRGIQYK 41.967 0.038209 8063000 3268.7 2959.1 3133.2 2851.7 2599.7 2949 2729.8 2975.6 2913.8 2953.3 TRUE FALSE FALSE 2885.547941 3050.266364 3302.590269 2968.004652 2407.92531 2892.752738 2835.0893 3314.330276 2793.691931 2935.73364 0.982905227 1.039013323 1.124962505 1.010992486 0.82021246 0.9853594 0.965717483 1.128961508 0.951616282 1 11.51950536 -4.254348887 23.646717 0.99186012 1.128961648 0.255831454 0.072291321 441.029161 1470744.415 0.009883973 0.128702537 5.57E-05 4.254348887 0.137101528 RSEPQPEEGS(ph)PAGGQK ddPTM_HeLa_CUDC101_4h_R1 5 RSEPQPEEGSPAGGQK 16 1 F8WE91;Q9Y6K1;Q9Y6K1-3 F8WE91 DNMT3A DNA (cytosine-5)-methyltransferase 3A 1 0 RSEPQPEEGS(1)PAGGQK;RSEPQPEEGS(1)PAGGQK;RSEPQPEEGS(1)PAGGQK;RSEPQPEEGS(1)PAGGQK;RSEPQPEEGS(1)PAGGQK ;;;; 157.62 3.49E-05 15507000 9391.6 8565.2 9786.2 9678.9 10002.4 8743.9 8727.4 9325.1 9655.7 10156.1 TRUE FALSE FALSE 8290.730885 8829.08366 10315.27157 10073.64738 9264.54288 8577.124676 9064.018741 10386.63169 9257.687959 10095.69107 0.821214797 0.874539801 1.021749923 0.997816525 0.917672977 0.84958272 0.897810629 1.028818297 0.916993983 1 13.30145205 -4.254330438 23.42372701 0.9186791 1.028818422 0.202335799 0.063372424 551.2143311 1816113.734 0.011189599 0.146022678 5.57E-05 4.254330438 0.110139322 (ac)S(ph)DKPDMAEIEKFDK ddPTM_HeLa_CUDC101_4h_R1 4 SDKPDMAEIEKFDK 14 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 1 0 S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK;S(1)DKPDMAEIEKFDK ;;; 79.201 0.011836 708521000 20443.3 18931.8 18318.6 17804.2 21586.9 18430.7 20311.7 24703.7 20510.8 18258.8 TRUE FALSE FALSE 18046.96736 19515.06632 19308.95893 18530.33223 19994.47739 18079.16511 21095.12907 27515.86935 19665.33614 18150.19585 0.994312542 1.075198664 1.063843007 1.020943928 1.101612212 0.996086503 1.162253523 1.516009501 1.083477903 1 14.14769749 -4.25431517 2.009962953 1.015847174 1.670809714 0.909026988 0.044465418 0.138086618 0.581221012 0.006075689 0.166605458 5.57E-05 4.25431517 0.65496254 SSPNVANQPPS(ph)PGGK ddPTM_HeLa_CUDC101_4h_R1 1 SSPNVANQPPSPGGK 15 0 A8MQ02;J3KN01;P55196-3;P55196;P55196-5;Q5TIG5;P55196-2;P55196-6;P55196-1 A8MQ02 MLLT4 Afadin 1 0 SSPNVANQPPS(1)PGGK 189.45 4.19E-11 30971000 7396.8 7051.5 6393.6 6273.4 6907.3 6725.6 6138.6 7858.5 6682.8 7194.8 TRUE FALSE FALSE 6529.758317 7268.748357 6739.257356 6529.256368 6397.76224 6597.320386 6375.367858 8753.079875 6407.332155 7152.00501 0.912996888 1.016323164 0.942289239 0.912926705 0.894541074 0.922443479 0.89140987 1.223863778 0.895879148 1 12.80413203 -4.254254185 24.99260456 0.94770447 1.223863908 0.794872732 0.043824876 323.3647488 1124746.879 0.006613747 0.090083809 5.57E-05 4.254254185 0.276159438 LSQLEEHLS(ph)QLQDNPPQEK ddPTM_HeLa_CUDC101_4h_R1 1 LSQLEEHLSQLQDNPPQEK 19 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;Q14980-4;Q14980-3;F5H6Y5;F5H4J1 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 LSQLEEHLS(1)QLQDNPPQEK 85.013 0.0031324 3468200 580.86 505 700.08 678.86 576.25 752.36 862.61 3082.2 914.23 792.33 TRUE FALSE FALSE 512.7724713 520.5584514 737.9284424 706.5468451 533.7411856 738.0099865 895.8811567 3433.065189 876.5450524 787.6171859 0.651042766 0.660928254 0.936912571 0.897068852 0.677665743 0.937016103 1.137457603 4.358799237 1.112907473 1 9.621350781 -4.254232805 3.696656496 0.828998481 4.767052818 0.980001408 0.149063611 0.026933288 0.673907497 0.021583873 0.292452516 5.57E-05 4.254232805 3.938054337 up ELT(ph)DEEAERLQLEIDQK ddPTM_HeLa_CUDC101_4h_R1 2 ELTDEEAERLQLEIDQK 17 1 Q9Y266;A0A0A0MSU9;A0A0A0MSS4 Q9Y266 NUDC Nuclear migration protein nudC 1 0 ELT(1)DEEAERLQLEIDQK;ELT(1)DEEAERLQLEIDQK ; 77.66 0.018347 11682000 3650.7 3803.4 3312.6 3283 4139.6 3444 3199.7 3869.1 3982.7 3663.3 TRUE FALSE FALSE 3222.77048 3920.578246 3491.689176 3416.89493 3834.229955 3378.311438 3323.113501 4309.542705 3818.53142 3641.510529 0.885009244 1.076635153 0.958857361 0.938318015 1.052922935 0.927722551 0.912564573 1.183449195 1.04861194 1 11.8303213 -4.25417824 24.50529488 0.958094736 1.183449336 0.452854265 0.064592796 401.0939633 1353588.348 0.008698962 0.118815405 5.57E-05 4.25417824 0.225354601 LRLDTGPQSLS(ph)GK ddPTM_HeLa_CUDC101_4h_R1 1 LRLDTGPQSLSGK 13 1 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 1 0 LRLDTGPQS(0.038)LS(0.962)GK 73.735 0.024958 47747000 1435 1865 2035.7 1567.1 1549.9 1790.1 1662.6 913.55 2261.6 1743.9 TRUE FALSE FALSE 1266.791475 1922.458439 2145.7561 1631.013112 1435.566965 1755.956825 1726.727039 1017.544839 2168.375891 1733.527205 0.730759501 1.108986599 1.237797765 0.940863868 0.828119086 1.012938718 0.996077266 0.586979446 1.250846185 1 10.75949476 -4.25410853 24.14322383 0.927612117 0.586979181 0.247638127 0.173096982 578.4429357 1904949.995 0.023071105 0.311900835 5.57E-05 4.25410853 -0.340632935 SLDSDES(ph)EDEEDDYQQKR ddPTM_HeLa_CUDC101_4h_R1 1 SLDSDESEDEEDDYQQKR 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 1 0 SLDS(0.021)DES(0.979)EDEEDDYQQKR 159.5 1.57E-05 19636000 2524 2442.7 2611.2 2394.7 2906.4 2248.7 3083.9 5060.5 2748.3 2175.5 TRUE FALSE FALSE 2228.140546 2517.956692 2752.36937 2492.366217 2692.000662 2205.809794 3202.847056 5636.566865 2635.013911 2162.560029 1.030325409 1.164340715 1.272736633 1.152507298 1.244821242 1.019999336 1.481044231 2.606432556 1.218469719 1 11.07852446 -4.254098735 2.130473257 1.068857652 3.049435535 0.938070264 0.112058139 0.115537414 0.56722907 0.016967862 0.438992766 5.57E-05 4.254098735 1.980577884 up AAEAGGAEEQYGFLT(ph)TPTK ddPTM_HeLa_CUDC101_4h_R1 3 AAEAGGAEEQYGFLTTPTK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AAEAGGAEEQYGFLT(0.909)T(0.09)PT(0.001)K;AAEAGGAEEQYGFLT(0.933)T(0.067)PTK;AAEAGGAEEQYGFLT(0.497)T(0.497)PT(0.005)K ;; 210.39 1.45E-23 416932100 11054.3 10760 8882.7 8995.81 10768.7 9927.6 8956.7 10935.8 10485.1 9849.6 TRUE FALSE FALSE 9758.531711 11091.50285 9362.925631 9362.698015 9974.314455 9738.247571 9302.162919 12180.68727 10052.89974 9791.014141 0.996682424 1.132824719 0.956277409 0.956254161 1.01872128 0.994610714 0.950071442 1.244067989 1.026747546 1 13.25724258 -4.254096882 24.80296023 1.000420851 1.244068117 0.674807544 0.050041087 329.8430419 1114179.609 0.006418846 0.088319693 5.57E-05 4.254096882 0.243647266 GWDAEGS(ph)PFR ddPTM_HeLa_CUDC101_4h_R1 1 GWDAEGSPFR 10 0 Q8IVD9 Q8IVD9 NUDCD3 NudC domain-containing protein 3 1 0 GWDAEGS(1)PFR 98.898 0.017449 4277100 2928.4 2136.4 2101.8 2172.8 2239.1 2245.9 1829 1001 2665.8 2576.7 TRUE FALSE FALSE 2585.137391 2202.219952 2215.429666 2261.416176 2073.926054 2203.063199 1899.545143 1114.949794 2555.914596 2561.373674 1.009277724 0.859780818 0.864938095 0.882891941 0.809692891 0.860110035 0.741611879 0.435293688 0.997868691 1 11.32270202 -3.775403221 0.40817425 1.001635918 3.21E-19 0.825352742 0.066923131 2.186860456 0.185607362 0.017735646 1.15852695 0.000167725 3.775403221 -1.001635918 down AQS(ph)SPASATFPVSVQEPPTKPR ddPTM_HeLa_CUDC101_4h_R1 2 AQSSPASATFPVSVQEPPTKPR 22 1 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 1 0 AQS(0.783)S(0.212)PAS(0.005)ATFPVSVQEPPTKPR;AQS(0.752)S(0.247)PAS(0.002)ATFPVSVQEPPTKPR ; 184.66 1.21E-13 205611000 2059.91 1546.11 1654.22 1665.79 1839.96 1499.63 1484.57 2397 1937.89 1792.52 TRUE FALSE FALSE 1818.450472 1593.743817 1743.652137 1733.728116 1704.229817 1471.027056 1541.830362 2669.864791 1858.009354 1781.858011 1.020536126 0.894428067 0.978558407 0.972988928 0.95643413 0.825557955 0.865293616 1.498360012 1.042737043 1 10.79916666 -4.254075304 24.98918619 0.97462335 1.49836026 0.845600693 0.06953073 279.4349381 948208.8478 0.010492902 0.145257483 5.57E-05 4.254075304 0.52373691 VNGTTVSSPS(ph)TSLQR ddPTM_HeLa_CUDC101_4h_R1 1 VNGTTVSSPSTSLQR 15 0 A0A075B6G3;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A087WV90;P11532-11;P11532;P11532-8;P11532-14;P11532-6;P11532-15;P11532-5;P11532-7;P11532-12;P11532-2;P11532-17;P11532-3;A0A5H1ZRP7;A0A5H1ZRP9;A0A5H1ZRQ1;A0A5H1ZRQ8;H0Y304;P11532-16;P11532-9;P11532-13;A0A5H1ZRR9 A0A075B6G3 DMD Dystrophin 1 0 VNGTT(0.001)VS(0.239)S(0.239)PS(0.419)T(0.078)S(0.025)LQR 74.966 0.029995 24841000 2146.3 1832.6 2066.8 2061.9 1907.3 1645.8 1739 1957.5 1770.1 1811 TRUE FALSE FALSE 1894.713968 1889.060234 2178.53746 2145.993194 1766.602279 1614.409107 1806.073813 2180.333888 1697.135729 1800.228091 1.052485503 1.049344937 1.210145242 1.192067386 0.98132136 0.896780311 1.003247211 1.211143131 0.942733722 1 10.81396399 -4.25405109 23.82302293 1.037885293 1.211143294 0.236524938 0.094121788 549.6563951 1772240.128 0.013183897 0.178947191 5.57E-05 4.25405109 0.173258001 EVS(ph)PAPAVAGQSK ddPTM_HeLa_CUDC101_4h_R1 2 EVSPAPAVAGQSK 13 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 0 EVS(1)PAPAVAGQSK;EVS(1)PAPAVAGQSK ; 160.46 5.80E-05 73092000 6871.3 5922.4 5993.3 5003.9 6899.3 6421.1 5867.2 7112.8 5852.6 7172.9 TRUE FALSE FALSE 6065.85663 6104.862124 6317.315927 5207.980671 6390.352384 6298.628216 6093.499869 7922.492401 5611.353351 7130.235272 0.850723209 0.856193645 0.885989829 0.73040797 0.896233033 0.883368918 0.854600113 1.11111234 0.786980112 1 12.79973397 -4.254035871 24.29379881 0.898093194 1.111112492 0.434098413 0.075569402 516.0767399 1693385.993 0.01161668 0.159244489 5.57E-05 4.254035871 0.213019298 VQMTSPSS(ph)TGSPMFK ddPTM_HeLa_CUDC101_4h_R1 1 VQMTSPSSTGSPMFK 15 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 VQMT(0.009)S(0.295)PS(0.188)S(0.384)T(0.12)GS(0.004)PMFK 103.3 0.0010173 0 2148.2 1976.8 1636.7 1707.8 2107.5 1706.2 1810.1 1424.3 1715.3 1768.5 TRUE FALSE FALSE 1896.391252 2037.702865 1725.184953 1777.451466 1952.033924 1673.657078 1879.916163 1586.436555 1644.594608 1757.980883 1.078732579 1.159115485 0.981344547 1.011075537 1.110384045 0.952033719 1.069360982 0.902419685 0.935501986 1 10.77970367 -4.254032388 23.96995617 1.041351379 0.902419565 0.241801515 0.067988903 456.062835 1475810.223 0.00814562 0.10970835 5.57E-05 4.254032388 -0.138931814 HS(ph)FNSFR ddPTM_HeLa_CUDC101_4h_R1 1 HSFNSFR 7 0 P51828 P51828 ADCY7 Adenylate cyclase type 7 1 0 HS(0.997)FNS(0.003)FR 100.02 0.021887 7245300 299.72 1089.8 364.12 228.97 350.55 462.82 387.06 188.28 403.17 331.49 TRUE FALSE FALSE 264.5872759 1123.375446 383.8054286 238.3083863 324.6906249 453.9924796 401.9890339 209.7130341 386.551162 329.5182827 0.802951732 3.409144515 1.164746992 0.723202319 0.985349348 1.37774595 1.219929378 0.636423061 1.173079559 1 8.364214703 -4.254015229 21.76008949 1.129227929 0.636421625 0.017395915 0.746987694 465.8919249 1365289.078 0.104404992 1.327752572 5.57E-05 4.254015229 -0.492806304 S(ph)CETSSQDLGFSYYPAENLIEYK ddPTM_HeLa_CUDC101_4h_R1 1 SCETSSQDLGFSYYPAENLIEYK 23 0 S5FZ81;Q8WUB8-3;Q8WUB8-2;Q8WUB8 S5FZ81 PHF10 PHD finger protein 10 1 0 S(0.695)CET(0.298)S(0.006)S(0.001)QDLGFSYYPAENLIEYK 106.42 8.13E-06 3226900 2081.8 1763.2 1456.6 1438.3 1549.8 1549.1 1504.3 1002.6 1906.1 1077.1 TRUE FALSE FALSE 1837.77456 1817.522102 1535.348202 1496.960091 1435.474342 1519.553498 1562.321355 1116.731931 1827.529751 1070.693361 1.716434066 1.697518793 1.433975644 1.398122137 1.340696033 1.419223798 1.459167873 1.042998838 1.706865679 1 10.06432965 -4.254014843 23.41519054 1.390524375 1.042998422 0.193628416 0.215176212 638.0419097 2012101.835 0.03887143 0.518580529 5.57E-05 4.254014843 -0.347525953 IS(ph)DAELEAELEK ddPTM_HeLa_CUDC101_4h_R1 4 ISDAELEAELEK 12 0 Q8WUX9 Q8WUX9 CHMP7 Charged multivesicular body protein 7 1 0 IS(1)DAELEAELEK;IS(1)DAELEAELEK;IS(1)DAELEAELEK;IS(1)DAELEAELEK ;;; 227.63 9.71E-33 151439000 9834.6 8561.8 7542.6 7863.7 8280.9 8215.5 8516.1 4479.41 7701.3 7666.1 TRUE FALSE FALSE 8681.803096 8825.57891 7950.375771 8184.415676 7670.034505 8058.803025 8844.56883 4989.327928 7383.849154 7620.501696 1.13926923 1.158136204 1.043287711 1.073999587 1.006499941 1.057516073 1.160628156 0.654724338 0.968945281 1 12.89567027 -4.253990149 24.9922756 1.072441478 0.654724138 0.789000664 0.064007104 309.6734641 1038933.967 0.009128004 0.12720165 5.57E-05 4.253990149 -0.41771734 SRSLS(ph)NS(ph)NPDISGTPTSPDDEVR ddPTM_HeLa_CUDC101_4h_R1 2 SRSLSNSNPDISGTPTSPDDEVR 23 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 2 0 S(0.003)RS(0.054)LS(0.951)NS(0.991)NPDISGTPTSPDDEVR;S(0.032)RS(0.115)LS(0.927)NS(0.926)NPDISGTPTSPDDEVR ; 139.2 2.50E-07 22615000 3190.1 2200.19 2454.3 2331.7 2747.01 2535.32 3290.8 5065.5 2544.65 2170.25 TRUE FALSE FALSE 2816.161314 2267.975246 2586.986882 2426.796804 2544.368545 2486.962995 3417.727258 5642.136045 2439.75845 2157.341256 1.305385184 1.051282563 1.199155152 1.12490168 1.179400124 1.152790727 1.584231168 2.615319216 1.130909838 1 11.07503869 -4.253976299 1.936850941 1.143570678 3.088813203 0.969238084 0.079539004 0.13099092 0.500030954 0.016064533 0.457431276 5.57E-05 4.253976299 1.945242525 up SGTAETEPVEQDSS(ph)QPS(ph)LPLVR ddPTM_HeLa_CUDC101_4h_R1 1 SGTAETEPVEQDSSQPSLPLVR 22 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 2 0 SGTAETEPVEQDS(0.414)S(0.627)QPS(0.959)LPLVR 60.218 0.0025768 0 802.34 551.52 477.69 431.9 669.61 724.26 591.8 783.82 656.39 715.02 TRUE FALSE FALSE 708.2909215 568.5116775 503.5153663 449.5147488 620.2142044 710.4459472 614.6259242 873.0469005 629.3333264 710.7670292 0.996516288 0.799856569 0.708411259 0.632436129 0.872598445 0.99954826 0.864736122 1.228316543 0.885428418 1 9.47323295 -4.253882327 23.80099019 0.926381736 1.228316834 0.324417745 0.13190361 525.1061173 1653743.048 0.021677478 0.295895573 5.57E-05 4.253882327 0.301935098 FNGGHS(ph)PTHS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 1 FNGGHSPTHSPEK 13 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 2 0 FNGGHS(0.534)PT(0.467)HS(0.999)PEK 145.46 0.0052619 34329000 6958 7079.6 6901.9 6192.8 6246.1 5589.7 5951.3 6397 6596.1 6462.2 TRUE FALSE FALSE 6142.393788 7297.714085 7275.037591 6445.369152 5785.337647 5483.085786 6180.843635 7125.208622 6324.205966 6423.762547 0.956198761 1.136049789 1.132519694 1.003363543 0.900615115 0.853562962 0.962184326 1.109195517 0.984501827 1 12.64920285 -4.253879426 23.30994246 0.986709585 1.10919567 0.145891248 0.084080099 559.6786003 1725565.653 0.012428182 0.167329526 5.57E-05 4.253879426 0.122486085 TALPTSGS(ph)SAGELELLAGEVPAR ddPTM_HeLa_CUDC101_4h_R1 1 TALPTSGSSAGELELLAGEVPAR 23 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 TALPTSGS(0.976)S(0.024)AGELELLAGEVPAR 194.15 4.18E-19 14897000 2141.1 1650.8 1809 1473.6 1943.7 2083 1666.7 2169.9 2098.1 1904.2 TRUE FALSE FALSE 1890.123504 1701.659191 1906.800012 1533.699777 1800.317123 2043.270246 1730.985177 2416.912645 2011.61543 1892.873734 0.998547061 0.898981882 1.007357215 0.810249384 0.951102597 1.079454065 0.91447472 1.276848319 1.062730912 1 10.88636246 -4.253797904 24.74471142 0.978430863 1.276848485 0.590849679 0.076454686 414.2116814 1341267.322 0.009671574 0.13677055 5.57E-05 4.253797904 0.298417622 TESGYGSESS(ph)LRR ddPTM_HeLa_CUDC101_4h_R1 2 TESGYGSESSLRR 13 1 A0A2U3TZL3;Q9Y5P4;Q9Y5P4-3;A0A2R8YCI0;A0A2R8YFI2;A0A2R8YEA4;A0A2R8Y5H3;A0A2R8Y7Q9;A0A2R8YEK8;A0A2R8YE18;A0A2R8Y5S9;A0A2R8Y7C5;Q9Y5P4-2 A0A2U3TZL3 COL4A3BP Collagen type IV alpha-3-binding protein 1 0 TESGYGS(0.005)ES(0.455)S(0.54)LRR;TESGYGS(0.019)ES(0.422)S(0.559)LRR ; 90.725 0.0092174 19256300 3764.8 3428.6 3112.1 3362.1 3206.2 3780.5 4153.9 7798.4 3331.9 4403.2 TRUE FALSE FALSE 3323.495851 3534.231102 3280.34954 3499.22097 2969.685014 3708.393261 4314.117314 8686.138334 3194.557672 4377.009571 0.759307422 0.807453364 0.749449935 0.799454722 0.678473502 0.847243581 0.985631227 1.98449151 0.729849369 1 12.09572982 -4.253787504 3.255164838 0.846361549 2.155166412 0.934800086 0.09290212 0.077619698 1.284964666 0.016358398 0.257539093 5.57E-05 4.253787504 1.308804863 REFITGDVEPTDAES(ph)EWHSENEEEEKLAGDMK ddPTM_HeLa_CUDC101_4h_R1 1 REFITGDVEPTDAESEWHSENEEEEKLAGDMK 32 2 Q99733;Q99733-2;E9PNJ7;C9J6D1;C9JZI7;A8MXH2;E9PKT8 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 REFITGDVEPTDAES(0.5)EWHS(0.5)ENEEEEKLAGDMK 68.516 6.29E-06 46221000 1010.3 702.93 593.91 606.74 1348.5 885.82 867.1 944.78 954.33 1075.5 TRUE FALSE FALSE 891.8741655 724.5864401 626.0185711 631.4854798 1249.023842 868.9244594 900.5443375 1052.329936 914.9921135 1069.102878 0.8342267 0.677751837 0.585555033 0.590668581 1.168291534 0.812760378 0.842336463 0.984311199 0.855850388 1 10.06218497 -4.253767899 21.42222257 0.864719991 0.984311627 0.018080818 0.173971275 413.7032086 1155009.395 0.026077668 0.335410956 5.57E-05 4.253767899 0.119591636 ALPAAHIPAPPHEGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 ALPAAHIPAPPHEGSPR 17 0 P17029;E9PC66 P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 1 0 ALPAAHIPAPPHEGS(1)PR 84.208 0.0063758 10468000 812.04 674.95 546.01 853.33 552.93 832.21 708.22 477.56 762.6 686.35 TRUE FALSE FALSE 716.8539022 695.7444095 575.5289522 888.1324858 512.1414555 816.3369808 735.5362826 531.9235 731.1653052 682.2675597 1.050693224 1.019753027 0.843553155 1.301736354 0.75064606 1.196505637 1.078076001 0.779640615 1.071669457 1 9.414193811 -4.25376343 23.94213543 1.026591384 0.779640395 0.208365158 0.14840549 576.9506698 1799491.766 0.017477107 0.243886514 5.57E-05 4.25376343 -0.246950989 EQTFSGGTS(ph)QDTK ddPTM_HeLa_CUDC101_4h_R1 2 EQTFSGGTSQDTK 13 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 EQTFS(0.014)GGT(0.027)S(0.956)QDT(0.003)K;EQTFS(0.014)GGT(0.056)S(0.93)QDTK ; 148.85 0.0007669 45917000 7035.8 5422.8 6052.6 5565.9 6079.9 8146.3 10511.8 43445 7126.3 8562.3 TRUE FALSE FALSE 6211.07419 5589.87004 6379.821864 5792.90146 5631.39789 7990.9229 10917.24365 48390.60319 6832.550898 8511.371059 0.729738387 0.656753184 0.749564532 0.680607322 0.661632286 0.938852606 1.282665692 5.685406365 0.802755614 1 13.05517583 -4.253741735 3.589455822 0.825039501 6.286352314 0.993590871 0.117466724 0.02092323 0.474236151 0.021981086 0.309029804 5.58E-05 4.253741735 5.461312813 up RKS(ph)VS(ph)TPVS(ph)AQMT(ph)SKSCK ddPTM_HeLa_CUDC101_4h_R1 1 RKSVSTPVSAQMTSKSCK 18 3 P51587 P51587 BRCA2 Breast cancer type 2 susceptibility protein 4 0 RKS(0.86)VS(0.897)T(0.248)PVS(0.919)AQMT(0.383)S(0.353)KS(0.339)CK 46.403 0.0033579 0 1318.5 1469.3 1582.7 1437 1204.3 1362.6 1389.6 958.64 1575.5 1530.5 TRUE FALSE FALSE 1163.947429 1514.567391 1668.265549 1495.607071 1115.461188 1336.610675 1443.197337 1067.767703 1510.557223 1521.396518 0.765051987 0.995511278 1.09653567 0.983048833 0.733182425 0.878541958 0.948600395 0.701833934 0.992875431 1 10.57118049 -4.253735165 23.82511159 0.90606696 0.701833739 0.259145151 0.109043551 641.8866942 1984924.849 0.017171001 0.238652277 5.58E-05 4.253735165 -0.204233221 SRSESETSTMAAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 SRSESETSTMAAKK 14 2 A0A087WVF1;Q96B23-2;Q96B23 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 0 1 SRSESETSTMAAK(1)K 53.869 0.037002 228610 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 EKPTDTEGLEGSPEKHEPS(ph)AVPATEAGEGQQPWGR ddPTM_HeLa_CUDC101_4h_R1 1 EKPTDTEGLEGSPEKHEPSAVPATEAGEGQQPWGR 35 2 O60237;O60237-6 O60237 PPP1R12B Protein phosphatase 1 regulatory subunit 12B 1 0 EKPT(0.017)DT(0.017)EGLEGS(0.132)PEKHEPS(0.827)AVPAT(0.007)EAGEGQQPWGR 41.388 0.019852 12864000 1541.5 1397.2 1533.7 1494.4 1705.9 1667.4 1351.6 1905.3 1809.9 1689.6 TRUE FALSE FALSE 1360.807707 1440.246076 1616.616461 1555.348091 1580.059156 1635.597123 1403.731665 2122.191651 1735.295156 1679.550184 0.810221522 0.85751893 0.962529418 0.926050383 0.940763289 0.973830457 0.83577834 1.263547628 1.033190418 1 10.71385919 -4.253639084 24.62786705 0.912234872 1.263547839 0.672167303 0.069933847 371.6684123 1173434.267 0.010637305 0.151737845 5.58E-05 4.253639084 0.351312967 SRSGRHVVFYPTLK ddPTM_HeLa_CUDC101_4h_R1 2 SRSGRHVVFYPTLK 14 2 H0YDL6;H0YCC4;H0YC89;Q9BWS9-3;Q9BWS9;Q9BWS9-2 H0YDL6 CHID1 Chitinase domain-containing protein 1 0 0 ; ; 46.481 0.034098 7467200 6470.5 5162.6 5679.7 5527.9 5450.9 5957.4 5657.2 6299 5950.1 5056.7 FALSE FALSE TRUE 5712.037799 5321.653587 5986.761762 5753.351656 5048.797967 5843.772521 5875.400099 7016.052699 5704.83436 5026.622524 1.136357021 1.058693698 1.19101081 1.144576031 1.004411599 1.162564424 1.168856438 1.395778709 1.134923964 1 12.29537364 -1.00000001 0.769202367 1.075272465 65.56733184 0.648737304 0.063286061 189.9525325 0.710176703 0.011435224 21295.61066 0.099999998 1.00000001 64.49205937 NQGGYDRYS(ph)GGNYR ddPTM_HeLa_CUDC101_4h_R1 1 NQGGYDRYSGGNYR 14 1 P98179 P98179 RBM3 RNA-binding protein 3 1 0 NQGGYDRY(0.001)S(0.999)GGNYR 111.81 0.015681 18261000 4701.8 4316.9 4253.1 4084 4017.2 3639.3 3418.8 2005.4 3816.5 4752.7 TRUE FALSE FALSE 4150.662131 4449.898572 4483.035451 4250.563173 3720.859159 3569.886416 3550.664261 2233.68663 3659.182255 4724.430729 0.878552861 0.941890955 0.948904896 0.899698486 0.787578308 0.755622554 0.751553883 0.472794874 0.774523422 1 12.20592479 -3.76773764 0.496622292 0.949581724 1.84E-17 0.746716477 0.072258095 1.65055401 0.193554664 0.011408852 1.017102457 0.000170711 3.76773764 -0.949581724 down QLSSTS(ph)PLAPYPTSQMVSSDR ddPTM_HeLa_CUDC101_4h_R1 2 QLSSTSPLAPYPTSQMVSSDR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 0 QLSST(0.005)S(0.995)PLAPYPTSQMVSSDR;QLSST(0.109)S(0.891)PLAPYPTSQMVSSDR ; 213.64 2.49E-26 29313000 4058.4 4257.6 3766.5 3816.3 4499.4 3527.1 4000.9 2782.3 3991.5 4306.4 TRUE FALSE FALSE 3582.680504 4388.77161 3970.128383 3971.945209 4167.488226 3459.826444 4155.216053 3099.025786 3826.968681 4280.785341 0.836921317 1.025225808 0.927429914 0.927854329 0.973533568 0.808222363 0.970666764 0.723938609 0.893987522 1 12.06365978 -4.253625947 24.21785733 0.927094132 0.723938454 0.4723373 0.065083534 480.8531513 1490355.882 0.010080342 0.142162642 5.58E-05 4.253625947 -0.203155678 LYSGS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 1 LYSGSPTR 8 0 Q6PJI9;H3BMH3;Q6PJI9-3;Q6PJI9-4 Q6PJI9 WDR59 WD repeat-containing protein 59 1 0 LYS(0.023)GS(0.97)PT(0.007)R 120.31 0.0074035 73553000 5023.6 3790.9 4271.2 3801.5 3694.8 4215.6 3921.3 3009.4 3797.5 3450.1 TRUE FALSE FALSE 4434.741223 3907.693136 4502.113992 3956.541601 3422.241965 4135.194454 4072.545855 3351.977932 3640.965443 3429.578652 1.293086316 1.139409103 1.312730935 1.153652388 0.997860762 1.205744167 1.187477025 0.977373104 1.061636374 1 11.74381563 -4.253482088 23.07234809 1.15125957 0.977372842 0.203640652 0.102497434 508.9552692 1475616.891 0.01722522 0.237570238 5.58E-05 4.253482088 -0.173886728 SADAGSFS(ph)PTPGQIGGAVK ddPTM_HeLa_CUDC101_4h_R1 1 SADAGSFSPTPGQIGGAVK 19 0 O00443 O00443 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha 1 0 SADAGSFS(0.5)PT(0.5)PGQIGGAVK 147.09 4.77E-05 7620000 2385.9 1336.7 1989.1 1630.2 2065.8 1928.7 1513.2 3365.8 2068.3 2106.4 TRUE FALSE FALSE 2106.228419 1377.882143 2096.636763 1696.686602 1913.41005 1891.913261 1571.564631 3748.949067 1983.043799 2093.871039 1.005901691 0.658054922 1.001320866 0.810310936 0.913814659 0.90354813 0.750554643 1.790439333 0.947070646 1 11.03195687 -4.253460186 24.95468416 0.941768206 1.790439758 0.827240069 0.12151452 320.9037394 1003593.108 0.01767678 0.26034689 5.58E-05 4.253460186 0.848671552 SDS(ph)QASLTVPLS(ph)PQVVR ddPTM_HeLa_CUDC101_4h_R1 1 SDSQASLTVPLSPQVVR 17 0 Q8TEV9-2;Q8TEV9 Q8TEV9-2 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 2 0 S(0.081)DS(0.919)QAS(0.002)LT(0.012)VPLS(0.986)PQVVR 141.74 3.64E-05 0 989.69 864.75 683.84 810.2 929.67 657.08 705.25 1154.3 825.24 865.7 TRUE FALSE FALSE 873.6800385 891.3919225 720.8104589 843.243458 861.0900963 644.5472938 732.4517287 1285.700846 791.2232579 860.5507779 1.015256811 1.035838843 0.837615255 0.97988809 1.000626713 0.748993912 0.851142951 1.494044139 0.9194382 1 9.749116513 -4.253358543 24.98714927 0.970665045 1.494044397 0.746782644 0.095827677 424.3152456 1312015.743 0.01392658 0.207028104 5.58E-05 4.253358543 0.523379353 AT(ph)AFQREELMKMK ddPTM_HeLa_CUDC101_4h_R1 1 ATAFQREELMKMK 13 2 Q8WZ73-3;Q8WZ73-2;Q8WZ73;C9JE27 Q8WZ73-3 RFFL E3 ubiquitin-protein ligase rififylin 1 0 AT(1)AFQREELMKMK 68.283 0.034406 7571800 1621.8 1511.8 1397.4 1323.3 1370.7 1516.5 1327.4 1695.6 1406.8 1579.7 TRUE FALSE FALSE 1431.695062 1558.376766 1472.947671 1377.269894 1269.586192 1487.575289 1378.598263 1888.62025 1348.811109 1570.303874 0.911731217 0.992404586 0.938001679 0.877072213 0.80849714 0.947316831 0.877918144 1.202710049 0.858949106 1 10.61682805 -4.253323791 24.88075327 0.938301435 1.202710189 0.647160957 0.061694668 505.6769904 1550265.66 0.008878756 0.131645219 5.58E-05 4.253323791 0.264408753 GAGEEEGRDIS(ph)NGALAFT(ph)PLDTADPAKSPKPSNGAGVPNGALR ddPTM_HeLa_CUDC101_4h_R1 1 GAGEEEGRDISNGALAFTPLDTADPAKSPKPSNGAGVPNGALR 43 3 P00519;P00519-2 P00519 ABL1 Tyrosine-protein kinase ABL1 2 0 GAGEEEGRDIS(0.998)NGALAFT(0.432)PLDT(0.432)ADPAKS(0.107)PKPS(0.031)NGAGVPNGALR 43.041 0.0076261 17733000 895.16 1017.5 1413.7 1085.2 2286.5 1859 1609.4 8787.3 1509.2 973.08 TRUE FALSE FALSE 790.2307018 1048.847969 1490.128898 1129.459147 2117.82945 1823.542672 1671.475097 9787.610713 1446.990137 967.2920769 0.816951488 1.084313615 1.540515976 1.167650572 2.189441536 1.885203772 1.727994199 10.11856806 1.495918525 1 9.917807772 -4.253294876 3.979065088 1.1442912 11.00797388 0.970180838 0.455286557 0.032703522 1.051419816 0.073952702 0.93678031 5.58E-05 4.253294876 9.863682684 up S(ph)ATFPNAGPR ddPTM_HeLa_CUDC101_4h_R1 1 SATFPNAGPR 10 0 Q86X27-3;Q86X27 Q86X27-3 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 S(0.5)AT(0.5)FPNAGPR 119.03 0.0050817 33536000 2035.6 1628.5 1212 1545.7 1793.6 1941.1 1454.8 1938.8 1448 1506.7 TRUE FALSE FALSE 1796.990054 1678.672155 1277.524386 1608.740327 1661.289701 1904.076752 1510.912123 2159.505155 1388.312827 1497.738081 1.199802606 1.120804883 0.852969155 1.074113256 1.10919908 1.271301555 1.008795958 1.441844326 0.926939659 1 10.54856964 -4.2532522 24.5202249 1.088939775 1.441844557 0.462000688 0.119771255 573.5511567 1717707.347 0.016260635 0.241641617 5.58E-05 4.2532522 0.352904782 YSGAQDSGIGS(ph)DSVK ddPTM_HeLa_CUDC101_4h_R1 1 YSGAQDSGIGSDSVK 15 0 Q7Z7G8-2;Q7Z7G8-6;Q7Z7G8 Q7Z7G8-2 VPS13B Vacuolar protein sorting-associated protein 13B 1 0 YSGAQDS(0.017)GIGS(0.664)DS(0.319)VK 124.91 0.00014416 0 1773.3 1778.4 1680.6 1398.8 1714.6 1581.7 1362.5 1960.3 1428.4 1500.7 TRUE FALSE FALSE 1565.436462 1833.190396 1771.45832 1455.84911 1588.117374 1551.531708 1415.052081 2183.452628 1369.520747 1491.77377 1.049379265 1.228866222 1.187484561 0.975918158 1.064583254 1.040058311 0.948570159 1.463662033 0.918048551 1 10.54281305 -4.253205443 24.8622472 1.045369654 1.463662257 0.644244782 0.093136365 444.1161566 1340969.322 0.012236116 0.183212107 5.58E-05 4.253205443 0.418292603 DSRPSQAAGDNQGDEAKEQTFSGGTS(ph)QDTK ddPTM_HeLa_CUDC101_4h_R1 1 DSRPSQAAGDNQGDEAKEQTFSGGTSQDTK 30 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 DSRPSQAAGDNQGDEAKEQT(0.004)FS(0.036)GGT(0.29)S(0.647)QDT(0.022)K 63.423 0.00044244 23025000 402.21 493.28 539.06 471.72 814.43 660.9 1030.5 5191.3 693.56 693.99 TRUE FALSE FALSE 355.0635535 508.4773721 568.2032142 490.9587805 754.3511215 648.2944336 1070.24673 5782.256608 664.9711632 689.8621166 0.514687711 0.737071017 0.823647509 0.71167668 1.093481006 0.93974494 1.551392234 8.381756975 0.963918944 1 9.430164228 -4.253081456 3.509675822 0.801945243 9.369151317 0.994598528 0.16550939 0.019631787 0.412820603 0.030918074 0.448400577 5.58E-05 4.253081456 8.567206074 up HLAQAS(ph)QELQ ddPTM_HeLa_CUDC101_4h_R1 1 HLAQASQELQ 10 0 A0A669KBG0;Q8NBP7 A0A669KBG0 PCSK9 Proprotein convertase subtilisin/kexin type 9 1 0 HLAQAS(1)QELQ 84.658 0.036545 9874100 3479.4 3407.9 2837.8 2993.4 3374.6 3412.3 3255.2 1591 3393.5 2893.8 TRUE FALSE FALSE 3071.550006 3512.89336 2991.220052 3115.483791 3125.662481 3347.216063 3380.754154 1772.113009 3253.618494 2876.587549 1.067775604 1.221201615 1.03985017 1.083048486 1.086586947 1.163606532 1.175265518 0.616046958 1.131068823 1 11.49014266 -4.253070002 24.8952043 1.068715541 0.616046718 0.791875474 0.073196919 393.1171595 1169322.485 0.011143275 0.170357809 5.58E-05 4.253070002 -0.452668822 GQKS(ph)PGALETPSAAGSQGNTASQGK ddPTM_HeLa_CUDC101_4h_R1 1 GQKSPGALETPSAAGSQGNTASQGK 25 1 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5;C9JVY5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 GQKS(1)PGALETPSAAGSQGNTASQGK 164.22 1.15E-11 54358000 3984.8 3851.5 3146.6 3564 4855.5 3768.2 3587.3 4372.7 4169.6 4518.5 TRUE FALSE FALSE 3517.707785 3970.16015 3316.714714 3709.355325 4497.319439 3696.327863 3725.663363 4870.470493 3997.727323 4491.623761 0.783170624 0.883903096 0.738422203 0.825838388 1.001268066 0.822937997 0.829469154 1.084345162 0.890040559 1 12.13302137 -4.252922694 24.38884227 0.877915962 1.08434531 0.385784659 0.081743527 815.8707693 2336297.135 0.013883589 0.211359697 5.59E-05 4.252922694 0.206429348 SRTPPSAPSQSR ddPTM_HeLa_CUDC101_4h_R1 1 SRTPPSAPSQSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 0 84.892 0.035042 2464700 221.92 202.73 180.4 289.01 151.14 232.24 248.24 217.68 173.44 277.35 FALSE FALSE TRUE 195.906874 208.975871 190.1529697 300.797077 139.9907033 227.8104089 257.8147 242.4598113 166.2907298 275.7003099 0.710579085 0.757981995 0.689708944 1.091029158 0.507764041 0.826297254 0.935126624 0.879432495 0.603157573 1 8.106957079 -9.45431468 1.193533143 0.999792427 0.791403919 0 0.191637172 0.572935658 1.462202959 0.097543375 0.024293868 3.51E-10 9.45431468 -0.208388508 S(ph)FSSPENFQR ddPTM_HeLa_CUDC101_4h_R1 1 SFSSPENFQR 10 0 G3V1T9;J3KPD3;Q9Y580;I3L521;F5GXV8;F5GY08 G3V1T9 RBM7 RNA-binding protein 7 1 0 S(0.961)FS(0.031)S(0.009)PENFQR 98.182 0.018226 26707000 2519.2 1849 1448.5 1580.4 1635.7 2035.6 2863.8 9352.9 1941.1 2001.3 TRUE FALSE FALSE 2223.903195 1905.965498 1526.810291 1644.855543 1515.03767 1996.774322 2974.257725 10417.59633 1861.087036 1989.396179 1.117878489 0.95806231 0.767474226 0.826811452 0.76155654 1.003708735 1.495055513 5.236561949 0.935503474 1 10.9581149 -4.252884282 3.276860739 0.992107947 5.86996613 0.990705469 0.124479082 0.027313061 0.460891991 0.021584239 0.339570043 5.59E-05 4.252884282 4.877858183 up SSTPLHS(ph)PSPIR ddPTM_HeLa_CUDC101_4h_R1 3 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 SST(0.038)PLHS(0.845)PS(0.117)PIR;S(0.001)S(0.001)T(0.027)PLHS(0.938)PS(0.032)PIR;SSTPLHS(0.773)PS(0.227)PIR ;; 132.23 0.00095766 60367000 9500.6 6377.3 6550.41 6009.72 8903.6 8147.9 8217.1 11495.8 8055.4 8468.8 TRUE FALSE FALSE 8386.95407 6573.777054 6904.544979 6254.822358 8246.799166 7992.492383 8534.0363 12804.4354 7723.353002 8418.427201 0.9962614 0.78087948 0.820170421 0.742991797 0.979612815 0.949404466 1.013732862 1.521000907 0.917434197 1 13.03933501 -4.252715579 3.31869971 0.948164407 1.604581611 0.777510559 0.096677142 0.144350861 2.534447997 0.015694049 0.243564621 5.59E-05 4.252715579 0.656417204 (ac)SAAT(ph)HSPMMQVASGNGDRDPLPPGWEIK ddPTM_HeLa_CUDC101_4h_R1 1 SAATHSPMMQVASGNGDRDPLPPGWEIK 28 1 O95817 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 S(0.308)AAT(0.345)HS(0.345)PMMQVAS(0.002)GNGDRDPLPPGWEIK 48.286 5.39E-07 6870500 776.22 708.19 623.02 607.81 681.71 624.88 535.18 321.9 674.74 503.31 TRUE FALSE FALSE 685.2326683 730.0084945 656.7023457 632.599119 631.4216115 612.9614551 555.8220719 358.5437948 646.9269316 500.3162897 1.369598956 1.459093996 1.312574384 1.264398405 1.262044879 1.225147907 1.110941385 0.716634262 1.293035915 1 8.966696615 -4.252693086 2.375860375 1.223581734 0.589478885 0.649277017 0.119535357 0.419221499 2.758149137 0.023746813 0.549732002 5.59E-05 4.252693086 -0.634102849 NHAGS(ph)PGCEESDAGKEK ddPTM_HeLa_CUDC101_4h_R1 3 NHAGSPGCEESDAGKEK 17 1 P42575 P42575 CASP2 Caspase-2;Caspase-2 subunit p18;Caspase-2 subunit p13;Caspase-2 subunit p12 1 0 NHAGS(0.978)PGCEES(0.022)DAGKEK;NHAGS(0.983)PGCEES(0.017)DAGKEK;NHAGS(0.994)PGCEES(0.006)DAGKEK ;; 86.959 0.0048022 45679400 6242.33 6524.78 9081.9 8231.8 8813.4 7209.1 6259.47 3709.79 8638 8288.7 TRUE FALSE FALSE 5510.61354 6725.800738 9572.894985 8567.528385 8163.253041 7071.598429 6500.899855 4132.097498 8281.937984 8239.398444 0.668812605 0.816297547 1.16184392 1.039824502 0.990758378 0.85826635 0.789001758 0.501504755 1.005162942 1 13.0083233 -4.252649597 2.112501436 0.886635331 0.390041888 0.454145351 0.137802027 0.67655897 3.238049336 0.024392614 0.641599239 5.59E-05 4.252649597 -0.496593443 FDTFSSLVPEDS(ph)PHVGHR ddPTM_HeLa_CUDC101_4h_R1 1 FDTFSSLVPEDSPHVGHR 18 0 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 FDTFS(0.003)S(0.014)LVPEDS(0.983)PHVGHR 105.06 0.00021207 0 1584 1059.1 912.39 1225.7 1593.1 1259.1 1154.7 543.71 1405.5 1195.4 TRUE FALSE FALSE 1398.325921 1091.729616 961.7165632 1275.689344 1475.580187 1235.084765 1199.237166 605.6037486 1347.564695 1188.289708 1.176755056 0.918740277 0.809328362 1.073550781 1.241768045 1.039380176 1.009212785 0.509643183 1.134037168 1 10.2146709 -4.252606282 3.542063227 1.061393764 0.4388337 0.649047083 0.118088989 0.15421759 3.33870951 0.017877491 0.25767497 5.59E-05 4.252606282 -0.622560064 GTDS(ph)QAMEEEKPEGHV ddPTM_HeLa_CUDC101_4h_R1 2 GTDSQAMEEEKPEGHV 16 1 Q13451 Q13451 FKBP5 "Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed" 1 0 GT(0.189)DS(0.811)QAMEEEKPEGHV;GT(0.042)DS(0.958)QAMEEEKPEGHV ; 134.32 0.00023722 28917000 5544.8 4175.7 4365.4 4569.6 4816.4 6191.2 6567.2 22907 4982.5 5614 TRUE FALSE FALSE 4894.846949 4304.348368 4601.406729 4755.968039 4461.103768 6073.113175 6820.499104 25514.64029 4777.119241 5580.607678 0.877117194 0.771304599 0.824535067 0.852231211 0.799393906 1.088253023 1.222178569 4.572018274 0.856021336 1 12.44620651 -4.252591883 3.682326589 0.915714503 5.005031011 0.99252709 0.095395638 0.019004501 0.467901074 0.015499354 0.214097163 5.59E-05 4.252591883 4.089316508 up YFDDEFTAQSITIT(ph)PPDR ddPTM_HeLa_CUDC101_4h_R1 3 YFDDEFTAQSITITPPDR 18 0 P31751;P31751-2;M0R0P9;M0R283 P31751 AKT2 RAC-beta serine/threonine-protein kinase 1 0 YFDDEFTAQSIT(0.008)IT(0.991)PPDR;YFDDEFTAQSIT(0.066)IT(0.934)PPDR;YFDDEFTAQSIT(0.046)IT(0.954)PPDR ;; 282.33 3.52E-103 28510000 8855.6 7489.44 6697.87 7307.05 7766.14 8371.5 7964.76 9650.6 8417.81 8842.2 TRUE FALSE FALSE 7817.559992 7720.180769 7059.977112 7605.063083 7193.247325 8211.827585 8271.963461 10749.18529 8070.824309 8789.606201 0.889409584 0.878330677 0.803218819 0.865233653 0.81838107 0.934265699 0.941107403 1.222942763 0.918223652 1 13.10158281 -4.252587777 3.705881616 0.91599791 1.258795351 0.731457243 0.058618933 0.152255681 3.829631776 0.010525686 0.144409179 5.59E-05 4.252587777 0.342797441 S(ph)LYASS(ph)PGGVYATR ddPTM_HeLa_CUDC101_4h_R1 2 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 2 0 S(0.983)LY(0.017)AS(0.412)S(0.586)PGGVYAT(0.002)R;S(0.786)LY(0.214)AS(0.113)S(0.887)PGGVYATR ; 174.4 2.89E-06 38776000 8785.4 7214.4 7095.8 7156.7 8126 7713.8 6606.1 5144.6 7032.3 7681 TRUE FALSE FALSE 7755.58873 7436.667113 7479.420412 7448.58116 7526.561169 7566.672117 6860.89949 5730.240469 6742.425618 7635.31307 1.015752551 0.97398326 0.979582676 0.975543647 0.98575672 0.991010067 0.898574744 0.750491881 0.883058174 1 12.8984716 -4.252540606 1.50009556 0.999882238 0.645412866 0.728969974 0.039853344 0.175214532 0.348995364 0.002619967 0.092461784 5.59E-05 4.252540606 -0.354469372 TFLDKDAQRLS(ph)PIPEEVPK ddPTM_HeLa_CUDC101_4h_R1 1 TFLDKDAQRLSPIPEEVPK 19 2 Q96T23-3;Q96T23-2;Q96T23;H0YCN2;H0YER1 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 0 T(0.001)FLDKDAQRLS(0.999)PIPEEVPK 57.238 0.033241 186730000 2609.5 2008.7 2041.9 1836.1 2194.7 2407 1901.5 2446.5 2198.5 2010.3 TRUE FALSE FALSE 2303.618366 2070.585666 2152.29129 1910.984094 2032.801353 2361.090485 1974.841492 2724.999671 2107.876899 1998.342646 1.152764452 1.036151468 1.077038162 0.956284498 1.017243643 1.181524345 0.988239677 1.363629844 1.054812549 1 10.96458826 -4.252447228 24.58837621 1.063124127 1.36363004 0.651915531 0.067938412 511.2526278 1397944.547 0.010471378 0.166861881 5.59E-05 4.252447228 0.300505913 SEQSSMSIEFGQES(ph)PEQSLAMDFSR ddPTM_HeLa_CUDC101_4h_R1 3 SEQSSMSIEFGQESPEQSLAMDFSR 25 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SEQSSMSIEFGQES(0.964)PEQS(0.035)LAMDFSR;SEQSSMS(0.001)IEFGQES(0.912)PEQS(0.086)LAMDFSR;SEQSSMSIEFGQES(1)PEQSLAMDFSR ;; 195.35 1.25E-22 28101700 2682.79 2444.81 2035.8 1848.84 2516.41 2368.17 1998.49 2656.75 2569.42 2191.92 TRUE FALSE FALSE 2368.317423 2520.131698 2145.861506 1924.243687 2330.779448 2323.001103 2075.572429 2959.183681 2463.50742 2178.882362 1.08694139 1.156616687 0.984845049 0.883133353 1.069713303 1.066143424 0.952585814 1.358119985 1.130628924 1 11.08937259 -4.252446165 24.95346813 1.034408495 1.358120156 0.59812575 0.079010165 593.3884582 1646438.878 0.010410358 0.170370377 5.59E-05 4.252446165 0.323711661 LMPVSLSVQS(ph)PAALTAEK ddPTM_HeLa_CUDC101_4h_R1 1 LMPVSLSVQSPAALTAEK 18 0 P54198 P54198 HIRA Protein HIRA 1 0 LMPVSLS(0.007)VQS(0.993)PAALTAEK 197.94 9.28E-17 9493000 1179.4 976.6 913.03 933.86 1162.5 796.75 1075.3 545.13 1125.6 1032.2 TRUE FALSE FALSE 1041.15252 1006.687888 962.3911636 971.9468473 1076.744691 781.5533212 1116.774681 607.1853957 1079.202292 1026.060428 1.014708774 0.981119494 0.937947841 0.947260824 1.049396957 0.761703014 1.088410244 0.591763778 1.051792138 1 10.00289998 -4.252308171 24.85853518 0.987328353 0.591763556 0.647728065 0.086095934 471.7026004 1284120.306 0.010525226 0.173053857 5.59E-05 4.252308171 -0.395564798 YSPT(ph)SPTYSPTTPK ddPTM_HeLa_CUDC101_4h_R1 1 YSPTSPTYSPTTPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YS(0.009)PT(0.479)S(0.479)PT(0.032)YSPTTPK 226.23 2.71E-32 205870000 3982.7 3809 3380.6 3438.6 3941.8 3690.3 3432.5 3598.7 3449.8 3805.2 TRUE FALSE FALSE 3515.853943 3926.350775 3563.365462 3578.840971 3651.021267 3619.913676 3564.892675 4008.361462 3307.597784 3782.566501 0.929488997 1.038012359 0.942049653 0.946140926 0.965223286 0.956999348 0.942453404 1.059693586 0.874432157 1 11.88514973 -4.25228135 24.17410465 0.965864407 1.059693665 0.332924274 0.041996223 590.7334427 1559283.653 0.004664016 0.075030335 5.59E-05 4.25228135 0.093829258 SGSLGQPSPS(ph)AQR ddPTM_HeLa_CUDC101_4h_R1 1 SGSLGQPSPSAQR 13 0 A0A087WWW7;E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0;H0Y4U1 A0A087WWW7 TNS1 Tensin-1 1 0 SGSLGQPS(0.114)PS(0.886)AQR 110.35 0.00063894 0 1814.3 1795.3 1599.7 1730.6 1947.7 1723.3 1428.7 2204.6 1718.6 1720.1 TRUE FALSE FALSE 1601.630504 1850.611065 1686.184621 1801.181348 1804.022051 1690.430924 1483.805438 2455.562753 1647.758581 1709.868769 0.936697911 1.082311753 0.986148558 1.053403268 1.055064625 0.988631967 0.867789075 1.436111822 0.963675465 1 10.73966989 -4.252124202 24.91783897 0.985436172 1.436112071 0.831536783 0.059803977 356.0107496 952298.0243 0.008432525 0.142638343 5.60E-05 4.252124202 0.450675899 KISENSYS(ph)LDDLEIGPGQLSSSTFDSEK ddPTM_HeLa_CUDC101_4h_R1 1 KISENSYSLDDLEIGPGQLSSSTFDSEK 28 1 Q9UHB6-4;Q9UHB6-5;Q9UHB6;F8VQE1;Q9UHB6-2;F8VRN8 Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 1 0 KIS(0.085)ENS(0.146)Y(0.057)S(0.713)LDDLEIGPGQLSSSTFDSEK 78.9 9.84E-06 39793000 2447.6 2617.4 2588.7 2087.9 2894.6 2626 2541 1400 1998.1 2482.4 TRUE FALSE FALSE 2160.696038 2698.038992 2728.652952 2173.053587 2681.071125 2575.913425 2639.007221 1559.370341 1915.737472 2467.634574 0.875614267 1.093370558 1.105776755 0.880622119 1.086494391 1.043879613 1.069448146 0.631929199 0.776345692 1 11.26891305 -4.252108874 24.41154347 0.98016625 0.631928942 0.501932401 0.107100841 545.5473257 1427281.545 0.013359919 0.222026532 5.60E-05 4.252108874 -0.348237308 VSPPAPGS(ph)APET(ph)PEDK ddPTM_HeLa_CUDC101_4h_R1 1 VSPPAPGSAPETPEDK 16 0 M0R0P8;Q13459-2;Q13459;M0R300 M0R0P8 MYO9B Unconventional myosin-IXb 2 0 VS(0.005)PPAPGS(0.995)APET(1)PEDK 99.915 0.016291 6152600 3186 2596.5 1911.2 2271 2645.1 3105.5 2407.1 3219.1 2810.4 2911.5 TRUE FALSE FALSE 2812.54191 2676.495087 2014.525253 2363.621196 2449.976243 3046.267762 2499.942653 3585.549332 2694.554122 2894.182269 0.971791563 0.924784564 0.696060257 0.816680145 0.846517605 1.052548692 0.863782036 1.23888166 0.931024335 1 11.49894007 -4.252043508 24.31167273 0.940499322 1.238881893 0.452577814 0.103542787 720.6347426 1864574.04 0.015911615 0.26330192 5.60E-05 4.252043508 0.298382571 WGSDFSPAS(ph)TVSAPVSR ddPTM_HeLa_CUDC101_4h_R1 1 WGSDFSPASTVSAPVSR 17 0 A0A1B0GV45 A0A1B0GV45 1 0 WGSDFS(0.002)PAS(0.488)T(0.488)VS(0.023)APVSR 86.772 0.0086451 6785000 1593.9 1268 1117.1 1103 1038 1284.3 1280 1586.1 1315 1167.9 TRUE FALSE FALSE 1407.065458 1307.065577 1177.493805 1147.985108 961.428808 1259.804117 1329.370029 1766.655213 1260.795143 1160.953279 1.211991459 1.125855451 1.014247366 0.988829722 0.828137381 1.085146267 1.145067638 1.521728088 1.085999899 1 10.1810942 -4.251937885 2.774394353 1.070106791 1.61206922 0.673826806 0.098445781 0.26543471 2.703831668 0.017011281 0.329576945 5.60E-05 4.251937885 0.541962429 LNQS(ph)PSLAPVKR ddPTM_HeLa_CUDC101_4h_R1 1 LNQSPSLAPVKR 12 1 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 0 LNQS(0.767)PS(0.233)LAPVKR 106.54 0.013546 22162000 2489.5 2242.6 2220.2 2022.5 2343.6 2272.1 2333.2 1330.8 2478.9 2225.6 TRUE FALSE FALSE 2197.684584 2311.691848 2340.230728 2104.986292 2170.717297 2228.763478 2423.192306 1482.292893 2376.718693 2212.362032 0.993365711 1.044897632 1.057797365 0.951465565 0.981176347 1.007413545 1.095296462 0.67000467 1.074290129 1 11.11137177 -4.251923688 24.99498985 1.005624567 0.670004491 0.840633379 0.045537261 323.7679869 850428.3353 0.00536121 0.091486621 5.60E-05 4.251923688 -0.335620076 ELPSLS(ph)PAPDTGLS(ph)PSKR ddPTM_HeLa_CUDC101_4h_R1 1 ELPSLSPAPDTGLSPSKR 18 1 Q9UBF8-2;A0A0B4J1S8;Q9UBF8;A0A0A0MSL0 Q9UBF8-2 PI4KB Phosphatidylinositol 4-kinase beta 2 0 ELPS(0.473)LS(0.526)PAPDT(0.031)GLS(0.536)PS(0.434)KR 64.954 0.015533 7413900 2017.4 1910.8 1898.2 1609.3 2047.1 1790.6 2001.2 1032.3 2125.9 1984.3 TRUE FALSE FALSE 1780.92343 1969.669483 2000.822434 1674.93421 1896.089511 1756.447288 2078.386954 1149.812859 2038.269502 1972.497295 0.902877502 0.99856638 1.014360039 0.849143983 0.961263428 0.890468794 1.053683044 0.582922401 1.033344637 1 10.94580761 -4.251885135 24.8796294 0.954467578 0.58292219 0.759664718 0.064472435 426.6954104 1111107.655 0.008204729 0.141744104 5.60E-05 4.251885135 -0.371545388 EIS(ph)PYENK ddPTM_HeLa_CUDC101_4h_R1 1 EISPYENK 8 0 H0YCZ2;Q8NG31-4;Q8NG31-2;Q8NG31 H0YCZ2 CASC5 Protein CASC5 1 0 EIS(0.988)PY(0.012)ENK 83.869 0.037422 19406000 3864.9 3449.9 3066.6 3682.3 4443.9 4067.6 3872.9 1927.6 4266.1 3667.4 TRUE FALSE FALSE 3411.862281 3556.18733 3232.389672 3832.48011 4116.08235 3990.017307 4022.27905 2147.030192 4090.249552 3645.586142 0.935888537 0.97547752 0.886658426 1.051265822 1.129059139 1.094478954 1.103328489 0.588939641 1.121973091 1 11.83193508 -4.25182076 24.66930677 0.99506231 0.588939379 0.688364831 0.086305542 504.4628755 1293786.831 0.011833497 0.204490051 5.60E-05 4.25182076 -0.406122931 LHS(ph)SNPNLSTLDFGEEK ddPTM_HeLa_CUDC101_4h_R1 2 LHSSNPNLSTLDFGEEK 17 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 LHS(0.5)S(0.5)NPNLSTLDFGEEK;LHS(0.5)S(0.5)NPNLSTLDFGEEK ; 144.3 0.00011106 198023000 14076.7 10604.1 9846.6 9867.5 11370.8 11930.9 10456.9 11164.9 9700.2 10556.9 TRUE FALSE FALSE 12426.65056 10930.79975 10378.93698 10269.9393 10531.99874 11703.33796 10860.22614 12435.86709 9300.35365 10494.10709 1.184155113 1.041613132 0.989025259 0.978638698 1.003610755 1.115229515 1.034888061 1.18503337 0.886245354 1 13.3572918 -4.251729818 23.45994451 1.065532094 1.185033525 0.107829424 0.084692758 839.6578132 2028650.618 0.01156715 0.191125938 5.60E-05 4.251729818 0.119501431 EDVEVVGGS(ph)DGEGAIGLSSDPK ddPTM_HeLa_CUDC101_4h_R1 1 EDVEVVGGSDGEGAIGLSSDPK 22 0 Q8NHZ8 Q8NHZ8 CDC26 Anaphase-promoting complex subunit CDC26 1 0 EDVEVVGGS(0.995)DGEGAIGLS(0.003)S(0.002)DPK 54.304 0.017573 4431300 2814.9 2573.5 2790.5 2306.8 3233.2 2693 2497.4 2986 2856 3060.5 TRUE FALSE FALSE 2484.941689 2652.786485 2941.362871 2400.881275 2994.693277 2641.635512 2593.725555 3325.91417 2738.274471 3042.29601 0.816798129 0.871968565 0.966823367 0.789167546 0.984353024 0.86830325 0.852555289 1.093225038 0.90006839 1 11.57094482 -4.251697209 24.2486283 0.903041587 1.093225196 0.435593241 0.067242714 803.2181413 1999177.138 0.01102542 0.190656766 5.60E-05 4.251697209 0.190183609 ESYTEEIVSEAESHVS(ph)GISR ddPTM_HeLa_CUDC101_4h_R1 2 ESYTEEIVSEAESHVSGISR 20 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 ESYTEEIVSEAES(0.001)HVS(0.872)GIS(0.127)R;ESYTEEIVSEAES(0.001)HVS(0.984)GIS(0.015)R ; 206.92 1.20E-24 7147200 3796.4 2794.7 2022.27 2332.83 3102.4 3090.2 3021.2 3381.8 2829.2 3112.9 TRUE FALSE FALSE 3351.391747 2880.801394 2131.600033 2427.972891 2873.542133 3031.259584 3137.728696 3766.770442 2712.579179 3094.384332 1.083056074 0.930977243 0.688860789 0.784638439 0.928631296 0.979600224 1.014007427 1.217292372 0.876613532 1 11.59543668 -4.251632875 2.929179478 0.978142648 1.261259097 0.255840984 0.121496373 0.538169329 6.428383109 0.019893954 0.361650527 5.60E-05 4.251632875 0.283116449 S(ph)VSPQNSDSSGFADVNGWHLR ddPTM_HeLa_CUDC101_4h_R1 1 SVSPQNSDSSGFADVNGWHLR 21 0 S4R3E2;Q9UKB3 S4R3E2 DNAJC12 DnaJ homolog subfamily C member 12 1 0 S(0.5)VS(0.5)PQNSDSSGFADVNGWHLR 214 1.48E-26 17436000 982.54 989.03 745.37 816.9 1096.7 845.62 887.09 648.72 1072 867.32 TRUE FALSE FALSE 867.3681506 1019.500842 785.6669568 850.2167129 1015.798626 829.4912074 921.3053585 722.5676626 1027.811706 862.1611421 1.006039484 1.182494539 0.911276232 0.986145944 1.178200427 0.962106927 1.068599956 0.838088876 1.192134111 1 9.751813731 -4.251628109 24.28769514 1.019923447 0.838088729 0.238729566 0.100192054 834.9937435 2066954.287 0.010713173 0.184484627 5.60E-05 4.251628109 -0.181834719 SEPVKEESS(ph)ELEQPFAQDTSSVGPDR ddPTM_HeLa_CUDC101_4h_R1 1 SEPVKEESSELEQPFAQDTSSVGPDR 26 1 Q15424-2;Q15424;Q15424-4;Q15424-3;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 0 SEPVKEES(0.3)S(0.7)ELEQPFAQDTSSVGPDR 74.769 0.00012998 8972000 543.28 464.03 368.96 388.55 567.02 462.81 384.17 579.29 589.57 439.68 TRUE FALSE FALSE 479.597542 478.3262143 388.9070936 404.3967485 525.1920643 453.9826703 398.9875656 645.234032 565.2676751 437.0647638 1.09731459 1.094405804 0.889815711 0.925255893 1.201634421 1.038708008 0.912879735 1.476289295 1.293327035 1 8.771703262 -4.251535959 24.87343436 1.034826353 1.476289552 0.515778443 0.122977533 587.8907409 1476514.753 0.012759264 0.228450051 5.60E-05 4.251535959 0.441463199 SSS(ph)LIQLTSQNSSPNQQR ddPTM_HeLa_CUDC101_4h_R1 3 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 0 S(0.02)S(0.03)S(0.95)LIQLTSQNSSPNQQR;SS(0.001)S(0.999)LIQLTSQNSSPNQQR;S(0.009)S(0.009)S(0.981)LIQLTSQNSSPNQQR ;; 314.17 6.38E-145 44086000 2814.45 1978.96 1885.78 1808.98 2167.37 2459.21 2633.05 4733.1 2224.16 2628.13 TRUE FALSE FALSE 2484.544437 2039.929412 1987.730971 1882.758023 2007.487433 2412.304667 2734.607621 5271.896972 2132.479183 2612.497766 0.951022608 0.780834892 0.760854611 0.720673544 0.768416899 0.923370997 1.046740654 2.01795272 0.816260673 1 11.35121409 -4.251398235 3.201720248 0.911768722 2.19237515 0.911776959 0.107617164 0.093089894 1.456761923 0.018320576 0.299795107 5.61E-05 4.251398235 1.280606428 up RS(ph)SDGS(ph)LSHEEDLAK ddPTM_HeLa_CUDC101_4h_R1 1 RSSDGSLSHEEDLAK 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 2 0 RS(0.581)S(0.495)DGS(0.891)LS(0.033)HEEDLAK 83.948 0.0086595 104000000 4158.9 3062.7 3071 3190.6 3770 3374.4 3455 2390.6 3917.1 3187.6 TRUE FALSE FALSE 3671.400046 3157.058157 3237.027549 3320.726459 3491.894611 3310.038942 3588.260507 2662.736241 3755.63548 3168.640013 1.158667451 0.996344849 1.021582614 1.047997388 1.102016826 1.044624485 1.13242921 0.840340408 1.185251548 1 11.62964805 -4.251331444 24.79534494 1.068392773 0.840340268 0.553171466 0.06330664 788.5332521 1934274.673 0.008991474 0.163316719 5.61E-05 4.251331444 -0.228052505 KES(ph)KEETPEVTK ddPTM_HeLa_CUDC101_4h_R1 2 KESKEETPEVTK 12 2 P46821;D6RA40;D6RA32 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KES(0.999)KEET(0.001)PEVTK;KES(0.999)KEET(0.001)PEVTK ; 75.764 0.018134 26750000 5152.3 4674.4 4855.8 5761.7 5653.8 6090 6066.5 6499.7 5575.4 6294.5 TRUE FALSE FALSE 4548.355204 4818.412723 5118.319236 5996.68703 5236.730438 5973.843397 6300.486937 7239.599575 5345.579652 6257.060034 0.726915705 0.770076154 0.818007053 0.958387325 0.836931468 0.954736468 1.006940465 1.157028946 0.854327691 1 12.61126923 -4.251256431 0.967884926 0.85919042 1.319425112 0.616327327 0.076575949 1.526944561 1.066644084 0.017178314 0.736149284 5.61E-05 4.251256431 0.460234692 PY(ph)AVMALENNY(ph)EVIFREPDT(ph)RWK ddPTM_HeLa_CUDC101_4h_R1 1 PYAVMALENNYEVIFREPDTRWK 23 2 Q9Y273;U3KPU5;A0A0U1RRA5;Q5TBK1 Q9Y273 92M18.2;N4BP2L1 NEDD4-binding protein 2-like 1 3 0 PY(1)AVMALENNY(1)EVIFREPDT(1)RWK 41.521 0.0030126 0 372.48 297.36 153.2 307.52 509.28 361.3 269.39 451.84 344.99 342.95 TRUE FALSE FALSE 328.818459 306.5213091 161.4824554 320.0619948 471.711429 354.4088045 279.7804625 503.2756392 330.7693662 340.9101181 0.96453124 0.899126464 0.473680442 0.938845689 1.383682689 1.039596027 0.820686884 1.47627076 0.970253884 1 8.413247609 -4.251222557 24.14126654 0.962722471 1.476271225 0.359925237 0.211782309 797.0513586 1883286.024 0.029412837 0.526412766 5.61E-05 4.251222557 0.513548754 S(ph)IKESSFEESNIEDPLIVTPDCQEK ddPTM_HeLa_CUDC101_4h_R1 1 SIKESSFEESNIEDPLIVTPDCQEK 25 1 A0A087WUU7;Q96GX5-2;Q96GX5-3;Q96GX5 A0A087WUU7 MASTL Serine/threonine-protein kinase greatwall 1 0 S(0.374)IKES(0.293)S(0.293)FEES(0.04)NIEDPLIVTPDCQEK 75.646 0.00016244 4481500 983.99 901.69 1011.7 730.84 1188.8 936.69 711.38 1285 1058.4 877.2 TRUE FALSE FALSE 868.6481838 929.4700001 1066.395562 760.6468142 1101.104592 918.8241989 738.8181649 1431.279206 1014.772304 871.9823754 0.996176309 1.065927508 1.222955409 0.872319023 1.262760147 1.053718773 0.847285663 1.641408412 1.163753228 1 9.768155165 -4.251216976 24.83813784 1.023062567 1.641408785 0.633408809 0.13223429 545.6083772 1325677.288 0.015923365 0.296569812 5.61E-05 4.251216976 0.618346218 AQPFGFIDS(ph)DTDAEEER ddPTM_HeLa_CUDC101_4h_R1 2 AQPFGFIDSDTDAEEER 17 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 AQPFGFIDS(0.99)DT(0.01)DAEEER;AQPFGFIDS(0.999)DT(0.001)DAEEER ; 160.09 4.46E-05 10813800 5245.5 4979.1 4095.7 3983.3 3335.3 3915.9 3136.9 2661.3 5145.3 5723.8 TRUE FALSE FALSE 4630.630442 5132.500169 4317.125931 4145.756191 3089.261564 3841.210732 3257.891284 2964.251635 4933.208556 5689.754583 0.813854161 0.902060026 0.758754331 0.728635327 0.542951637 0.675110091 0.57258907 0.520980579 0.867033628 1 12.47415071 -4.25104838 0.153056255 1.091909796 5.62E-11 0.806958325 0.067344576 5.501511648 0.144501925 0.171302046 1.235195318 5.61E-05 4.25104838 -1.091909796 GDSIEEILADS(ph)EDEEDNEEEER ddPTM_HeLa_CUDC101_4h_R1 1 GDSIEEILADSEDEEDNEEEER 22 0 Q5JTH9-2;Q5JTH9-3;Q5JTH9 Q5JTH9-2 RRP12 RRP12-like protein 1 0 GDSIEEILADS(1)EDEEDNEEEER 162.71 7.28E-08 2466600 1288.9 1095.4 998.12 1035.1 1071.5 1216.7 997.57 1184.2 1064.4 1091.9 TRUE FALSE FALSE 1137.817096 1129.147976 1052.081386 1077.315852 992.4575797 1193.493475 1036.046609 1319.004541 1020.524981 1085.40533 1.048287736 1.040300747 0.969298157 0.992547044 0.914365861 1.099583208 0.954525079 1.215218412 0.940224774 1 10.08401818 -4.250953547 24.82127444 1.013285576 1.215218536 0.57089816 0.055244483 717.4683804 1698300.606 0.006618272 0.127229444 5.61E-05 4.250953547 0.20193296 LSS(ph)DDGDSSTMR ddPTM_HeLa_CUDC101_4h_R1 2 LSSDDGDSSTMR 12 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 LSS(1)DDGDSSTMR;LS(0.002)S(0.998)DDGDSSTMR ; 207.34 2.67E-23 12044900 1090.18 1107.06 1038 958.98 1201.41 1225.95 1582.52 6544.9 1047.99 980.44 TRUE FALSE FALSE 962.390753 1141.167206 1094.11742 998.0913495 1112.784378 1202.567046 1643.558327 7289.944961 1004.791409 974.6082993 0.987464147 1.170898306 1.12262272 1.02409486 1.141776013 1.23389781 1.686378341 7.479871622 1.030969477 1 9.928678698 -4.250926789 3.438309856 1.047114963 8.369523982 0.997812065 0.089210262 0.013640662 0.267221855 0.017411171 0.26332096 5.61E-05 4.250926789 7.322409019 up VQDLSAGGQGS(ph)LTDSGPER ddPTM_HeLa_CUDC101_4h_R1 2 VQDLSAGGQGSLTDSGPER 19 0 P40222 P40222 TXLNA Alpha-taxilin 1 0 VQDLSAGGQGS(0.999)LT(0.001)DSGPER;VQDLSAGGQGS(0.966)LT(0.033)DSGPER ; 174.2 3.25E-18 4826700 2091.2 1912.58 1545.32 1370.35 1727.46 2044.52 1551.72 2214.9 1936.08 1887.21 TRUE FALSE FALSE 1846.072706 1971.504323 1628.864674 1426.238796 1600.028717 2005.524187 1611.57036 2467.035263 1856.273963 1875.984791 0.984055263 1.050917008 0.868271791 0.760261385 0.852900687 1.069051411 0.859052999 1.315061441 0.989493077 1 10.87343242 -4.250771932 24.32012113 0.961596048 1.315061737 0.567524609 0.096879953 649.6623499 1481087.229 0.013931258 0.26170641 5.61E-05 4.250771932 0.353465689 AQGAGVTLPPTPS(ph)GSR ddPTM_HeLa_CUDC101_4h_R1 1 AQGAGVTLPPTPSGSR 16 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 AQGAGVTLPPT(0.213)PS(0.721)GS(0.066)R 108.96 0.001876 13184000 2047.1 1623 2039.6 1712.2 2039.8 1982 1682.7 2367.7 1697.1 2199.5 TRUE FALSE FALSE 1807.142041 1673.002706 2149.866945 1782.030917 1889.328018 1944.196652 1747.602303 2637.229397 1627.14482 2186.417276 0.826531175 0.76517997 0.983283003 0.81504612 0.864120513 0.889215738 0.799299531 1.206187596 0.744205984 1 11.09435305 -4.250709648 24.75576007 0.892380686 1.2061878 0.558500503 0.088187568 853.1230154 1968292.687 0.012252205 0.240275048 5.61E-05 4.250709648 0.313807114 KLEKEEEEGISQES(ph)SEEEQ ddPTM_HeLa_CUDC101_4h_R1 4 KLEKEEEEGISQESSEEEQ 19 2 P17096;P17096-2 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 0 KLEKEEEEGIS(0.001)QES(0.5)S(0.5)EEEQ;KLEKEEEEGIS(0.01)QES(0.495)S(0.495)EEEQ;KLEKEEEEGIS(0.001)QES(0.499)S(0.499)EEEQ;KLEKEEEEGIS(0.001)QES(0.5)S(0.5)EEEQ ;;; 74.793 0.0086292 208486000 18652.9 18314.9 17887 17871.4 22399.2 18928 20341.2 30648.1 19015 20954.3 TRUE FALSE FALSE 16466.43534 18879.16036 18854.02533 18600.27294 20746.85564 18566.97994 21125.7669 34136.95582 18231.19365 20829.66289 0.790528172 0.906359381 0.905152686 0.892970426 0.996024552 0.89137208 1.014215497 1.638862616 0.875251498 1 14.34635187 -4.250661745 2.945774681 0.905695297 1.77356305 0.937285426 0.056445286 0.097517413 1.182307395 0.011100571 0.201832336 5.61E-05 4.250661745 0.867867753 KALVVPEPEPDS(ph)DSNQER ddPTM_HeLa_CUDC101_4h_R1 1 KALVVPEPEPDSDSNQER 18 1 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 KALVVPEPEPDS(0.906)DS(0.094)NQER 128.98 3.62E-05 7943600 2142.5 2140.6 2337.9 1902.4 2376.4 1897.7 1704.5 2891.8 2651.5 2340.3 TRUE FALSE FALSE 1891.359398 2206.549349 2464.293946 1979.988095 2201.097706 1861.504534 1770.243136 3220.990823 2542.204048 2326.379792 0.813005428 0.948490593 1.059282734 0.851102688 0.946147192 0.800172242 0.760943309 1.384550723 1.09277258 1 11.18387093 -4.250573614 24.92761884 0.905628491 1.384551008 0.627805393 0.107062777 703.6616905 1614268.885 0.013871344 0.274167996 5.62E-05 4.250573614 0.478922517 DGWS(ph)LDR ddPTM_HeLa_CUDC101_4h_R1 2 DGWSLDR 7 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 DGWS(1)LDR;DGWS(1)LDR ; 90.15 0.033257 10293000 5637.9 4672 4978.2 4814.7 4830.1 4885.8 5129.7 3472.2 5946.9 5098.8 TRUE FALSE FALSE 4977.033909 4815.938782 5247.33655 5011.064277 4473.793146 4792.611505 5327.554247 3867.461213 5701.766265 5068.472111 0.981959415 0.95017565 1.035289617 0.988673543 0.88267096 0.945573222 1.051116417 0.763042812 1.124947744 1 12.3073352 -4.250454555 24.81668648 0.983969178 0.763042671 0.541529909 0.063386307 642.084542 1450553.969 0.006103912 0.121811223 5.62E-05 4.250454555 -0.220926507 QADPQPQAWPPPDS(ph)PVRVDTVR ddPTM_HeLa_CUDC101_4h_R1 2 QADPQPQAWPPPDSPVRVDTVR 22 1 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ERU2 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 QADPQPQAWPPPDS(0.977)PVRVDT(0.023)VR;QADPQPQAWPPPDS(1)PVRVDTVR ; 161.04 8.24E-08 178346000 4692.2 4377.3 4122 3730.7 5127 4367.9 4463.2 5211.9 5016.8 4577.1 TRUE FALSE FALSE 4142.187429 4512.159425 4344.847788 3882.854071 4748.791424 4284.589585 4635.347119 5805.201629 4810.005381 4549.875206 0.910395833 0.99171059 0.954937793 0.853397928 1.043719049 0.941693869 1.018785551 1.275903484 1.057173035 1 12.15161126 -4.25034471 2.579631866 0.956835987 1.34840843 0.708742108 0.058237799 0.177261175 1.460422039 0.007114362 0.15191553 5.62E-05 4.25034471 0.391572443 LRS(ph)PPEALVQGR ddPTM_HeLa_CUDC101_4h_R1 3 LRSPPEALVQGR 12 1 Q9UHB6-4;Q9UHB6;F8VRN8 Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 1 0 LRS(1)PPEALVQGR;LRS(1)PPEALVQGR;LRS(1)PPEALVQGR ;; 125.47 0.0013741 109550000 3794.6 3771.01 3351.36 3410.1 4157.8 3722.2 3421.9 3677.4 3967.2 4012.5 TRUE FALSE FALSE 3349.80274 3887.190348 3532.544659 3549.178618 3851.087378 3651.205237 3553.883829 4096.020351 3803.670337 3988.633472 0.839837193 0.974566948 0.885652864 0.889823205 0.965515484 0.915402546 0.89100286 1.026923226 0.953627443 1 11.96167884 -4.250343567 23.72430721 0.921898705 1.026923351 0.303152667 0.046750763 991.5208678 2119918.068 0.008396204 0.159549669 5.62E-05 4.250343567 0.105024646 SS(ph)FSITR ddPTM_HeLa_CUDC101_4h_R1 1 SSFSITR 7 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 S(0.458)S(0.492)FS(0.05)ITR 104.06 0.017209 9791600 965.49 1177.2 705.1 1007.3 1467.4 1515.8 1527.3 6581.8 1103 1213.5 TRUE FALSE FALSE 852.3167258 1213.468137 743.2198388 1048.382048 1359.152825 1486.88864 1586.208473 7331.045507 1057.533873 1206.282048 0.706565042 1.005957221 0.61612443 0.869101923 1.126728884 1.232621047 1.314956544 6.077389214 0.876688727 1 10.23635156 -4.25013602 3.63609606 0.897355482 6.721800994 0.986958371 0.176496884 0.025834119 0.606702243 0.028767192 0.412058687 5.62E-05 4.25013602 5.824445512 up SGSLDSELSVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SGSLDSELSVSPK 13 0 Q12802-4;Q12802;Q12802-2;A0A087WTD7;A8MYJ1 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 SGSLDSELS(0.026)VS(0.974)PK;SGSLDSELS(0.096)VS(0.904)PK ; 203.85 4.01E-17 280995000 9292.8 8244.5 8100.7 7468.6 8276 7725.1 7538.5 7501.3 8427.7 7703.5 TRUE FALSE FALSE 8203.512071 8498.503273 8538.648345 7773.20179 7665.495968 7577.756588 7829.26247 8355.217671 8080.306639 7657.679239 1.071279145 1.109801417 1.115043877 1.015085844 1.00102077 0.989563071 1.022406688 1.091090056 1.055190011 1 12.90269152 -4.250126006 22.97173848 1.037871744 1.091090156 0.097460633 0.042929885 1059.792281 2151770.865 0.006839657 0.128014781 5.62E-05 4.250126006 0.053218413 SEANDAVNS(ph)STKEEK ddPTM_HeLa_CUDC101_4h_R1 1 SEANDAVNSSTKEEK 15 1 O15234;J3KSY7;K7EQ38 O15234 CASC3 Protein CASC3 1 0 SEANDAVNS(0.737)S(0.058)T(0.205)KEEK 71.376 0.02066 29802000 2136.9 1652.2 1493.1 1759.2 2127.8 2452.7 2213 2770.7 2687 3013.6 TRUE FALSE FALSE 1886.415821 1703.102324 1573.821502 1830.94778 1970.836433 2405.918834 2298.356151 3086.105288 2576.240723 2995.674973 0.629713116 0.568520397 0.525364573 0.611197075 0.657893947 0.803130799 0.767224806 1.030186958 0.859986729 1 11.54866539 -4.249952597 4.081242273 0.754237351 1.056863718 0.267997281 0.143577343 0.38438514 13.40486691 0.026912074 0.344696046 5.62E-05 4.249952597 0.302626366 EVPSKEEPS(ph)PVKAEVAEK ddPTM_HeLa_CUDC101_4h_R1 5 EVPSKEEPSPVKAEVAEK 18 2 P46821;D6RA40;D6RA32 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 EVPSKEEPS(1)PVKAEVAEK;EVPS(0.001)KEEPS(0.999)PVKAEVAEK;EVPSKEEPS(1)PVKAEVAEK;EVPSKEEPS(1)PVKAEVAEK;EVPS(0.003)KEEPS(0.997)PVKAEVAEK ;;;; 86.625 0.0054451 4018021000 23480.2 21052 22288.6 21408.5 22132.7 20473 19847.7 21257.1 22013.9 21891.4 TRUE FALSE FALSE 20727.88655 21700.58717 23493.58914 22281.63117 20500.01482 20082.51164 20613.23244 23676.92234 21106.47772 21761.18898 0.95251627 0.997215142 1.079609628 1.023916073 0.942044795 0.922859117 0.947247527 1.088034407 0.969913811 1 14.40946976 -4.249845354 24.28021172 0.980826908 1.088034503 0.346680303 0.043775981 1146.728305 2401412.669 0.00656669 0.137277097 5.63E-05 4.249845354 0.107207595 SRS(ph)DVDMDAAAEATR ddPTM_HeLa_CUDC101_4h_R1 1 SRSDVDMDAAAEATR 15 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 S(0.003)RS(0.997)DVDMDAAAEATR 118.05 0.0051135 11403000 2270.4 2422.3 2405.2 2851 2695 2353.4 2342.5 2471.2 3109.7 2946.9 TRUE FALSE FALSE 2004.267154 2496.928192 2535.232387 2967.276103 2496.195219 2308.512816 2432.85101 2752.511419 2981.51685 2929.371708 0.684196938 0.852376701 0.865452609 1.012939428 0.852126486 0.78805732 0.830502665 0.93962518 1.017800794 1 11.51637555 -4.249675806 21.80909909 0.854847719 0.939625492 0 0.103400767 897.4932688 1663709.203 0.017080495 0.318292903 5.63E-05 4.249675806 0.084777773 GGFDS(ph)PFYR ddPTM_HeLa_CUDC101_4h_R1 4 GGFDSPFYR 9 0 A0A2R8YFV7;A0A2R8Y5N2;A0A2R8Y5S3;Q92574-2;Q92574;A0A2R8Y6S1;A0A2R8YEH9 A0A2R8YFV7 TSC1 Hamartin 1 0 GGFDS(1)PFYR;GGFDS(1)PFYR;GGFDS(0.999)PFY(0.001)R;GGFDS(1)PFYR ;;; 107.55 0.011437 207114000 10926.9 8981 9042.9 8556.4 9928.6 9435 9235.6 7207.7 10565 8760.7 TRUE FALSE FALSE 9646.065346 9257.693965 9531.786527 8905.366976 9196.186959 9255.043095 9591.820186 8028.195433 10129.50623 8708.590967 1.107649376 1.063053024 1.094526837 1.02259562 1.055990228 1.062748627 1.10142045 0.921870767 1.163162476 1 13.0882236 -4.249575551 24.75889185 1.057293457 0.921870674 0.458304186 0.046506554 1083.477289 2261086.964 0.005950539 0.126029099 5.63E-05 4.249575551 -0.135422784 SNVSSPAT(ph)PTASSSSSTTPTRK ddPTM_HeLa_CUDC101_4h_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 S(0.009)NVS(0.077)S(0.233)PAT(0.377)PT(0.302)AS(0.002)S(0.001)SSSTTPTRK 87.098 0.0060663 22929000 2785.6 2948.7 2688.6 2403.6 2890.1 2770.6 2381.3 3236.1 3339 3077 TRUE FALSE FALSE 2459.076191 3039.545952 2833.953849 2501.629197 2676.903081 2717.755421 2473.147539 3604.484543 3201.365007 3058.697867 0.803961783 0.99373854 0.926522975 0.817873914 0.875177346 0.888533467 0.80856222 1.17843759 1.046643096 1 11.57870189 -4.249534099 24.26438371 0.898406396 1.178437848 0.498103408 0.081417723 789.3063832 1608655.968 0.011469037 0.246939724 5.63E-05 4.249534099 0.280031452 KS(ph)LDSDES(ph)EDEEDDYQQK ddPTM_HeLa_CUDC101_4h_R1 2 KSLDSDESEDEEDDYQQK 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 0 KS(0.717)LDS(0.356)DES(0.927)EDEEDDYQQK;KS(0.614)LDS(0.402)DES(0.984)EDEEDDYQQK ; 71.946 0.0014109 30645000 5417.8 4612.4 4198 4203.4 5234.1 4745 4113.6 5611.5 5373 5017.7 TRUE FALSE FALSE 4782.733697 4754.502577 4424.956578 4374.832821 4847.990871 4654.497031 4272.26293 6250.290478 5151.522666 4987.854497 0.958875945 0.953215973 0.887146283 0.877097121 0.971959161 0.933166161 0.856533191 1.253102006 1.032813341 1 12.28420366 -4.249349596 24.77411315 0.955328424 1.253102213 0.745256629 0.054142133 680.9547445 1395369.53 0.007614737 0.171293082 5.63E-05 4.249349596 0.297773789 DCDPGS(ph)PRR ddPTM_HeLa_CUDC101_4h_R1 1 DCDPGSPRR 9 1 Q00341;Q00341-2;A0A024R4E5;H0Y394 Q00341 HDLBP Vigilin 1 0 DCDPGS(1)PRR 68.132 0.037781 4253000 6130.5 2199.8 6998.2 7223.5 3556.6 3597.7 4533.5 1490.4 7063.5 1653.2 TRUE FALSE FALSE 5411.892083 2267.573231 7376.54386 7518.105553 3294.236704 3529.079867 4708.358614 1660.061112 6772.33954 1643.366693 3.293173767 1.379833996 4.488677964 4.574819233 2.004565821 2.14746951 2.865068785 1.010158669 4.121015455 1 10.68243872 -4.249306419 23.33257258 2.420896665 1.010156412 0.073276437 1.269429602 1497.298283 2879276.358 0.18480046 3.857994587 5.63E-05 4.249306419 -1.410740253 RTT(ph)GAPDIT(ph)WGMLK ddPTM_HeLa_CUDC101_4h_R1 1 RTTGAPDITWGMLK 14 1 Q8NEY8;F8W6A0;Q8NEY8-3 Q8NEY8 PPHLN1 Periphilin-1 2 0 RT(0.109)T(0.891)GAPDIT(1)WGMLK 71.98 0.0020838 0 157.96 129.8 135.54 0 62.6 201.21 131.43 0 0 59.893 TRUE FALSE FALSE 139.4441683 133.7989841 142.8677024 0 57.98212272 197.3722545 136.4992991 0 0 59.53675377 2.342152694 2.247334221 2.399655563 0 0.973887877 3.315132955 2.292689649 0 0 1 5.895708656 -4.249286963 24.13700084 1.72968099 6.67E-05 0.169604629 1.049277837 1411.161873 2802751.91 0.133147537 2.89612149 5.63E-05 4.249286963 -1.729614255 ASFDHS(ph)PDSLPLR ddPTM_HeLa_CUDC101_4h_R1 2 ASFDHSPDSLPLR 13 0 H0Y6H0;Q8NB78;Q8NB78-2 H0Y6H0 KDM1B Lysine-specific histone demethylase 1B 1 0 AS(0.001)FDHS(0.999)PDSLPLR;ASFDHS(1)PDSLPLR ; 106.82 0.0035305 8711600 5540 3171 2757.7 2833.4 5746.4 5154 4191.4 3344.3 5261.8 3893.4 TRUE FALSE FALSE 4890.609598 3268.694751 2906.789604 2948.958299 5322.49952 5055.696037 4353.063702 3725.001594 5044.906377 3870.241884 1.26364443 0.844571179 0.751061482 0.761957104 1.375236918 1.306299758 1.124752362 0.962472555 1.303511907 1 11.91820802 -4.249248715 21.51912492 1.087939372 0.962472026 0.024189965 0.222628097 1017.745786 1796285.953 0.032116278 0.612669919 5.63E-05 4.249248715 -0.125467347 ESAAPAAAPTAEAPPPSVVTRPEPQALPS(ph)PAIR ddPTM_HeLa_CUDC101_4h_R1 1 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR 33 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 0 ESAAPAAAPT(0.035)AEAPPPS(0.216)VVT(0.194)RPEPQALPS(0.556)PAIR 46.464 0.014818 138420000 626.99 585.16 517.57 580.28 654.76 477.65 652.48 200.67 613.61 552.61 TRUE FALSE FALSE 553.4951827 603.188086 545.5513998 603.9463266 606.4596593 468.5396221 677.6463722 223.5134617 588.3167361 549.3230511 1.007595042 1.098057117 0.993134001 1.099437435 1.104012763 0.852940034 1.233602651 0.406888918 1.070984978 1 9.101511022 -4.249056975 24.84586011 1.023797401 0.406888499 0.794490085 0.097404667 542.9978704 1089529.446 0.01161836 0.269727112 5.64E-05 4.249056975 -0.616908902 EEEWDPEYT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 EEEWDPEYTPK 11 0 Q9NYF8-2;Q9NYF8;Q9NYF8-4;H0YF14;Q9Y2W1;A0A3B3ITZ9 Q9NYF8-2;Q9Y2W1 BCLAF1;THRAP3 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3 1 0 EEEWDPEY(0.001)T(0.999)PK;EEEWDPEYT(1)PK;EEEWDPEYT(1)PK ;; 171.26 3.87E-06 132099700 21096.1 17941.1 17769.5 17180.4 21078 20226.2 19750.1 11353.5 17703.7 17768.4 TRUE FALSE FALSE 18623.24714 18493.84403 18730.17292 17881.09097 19523.11793 19840.41893 20511.86797 12645.93655 16973.94599 17662.71277 1.054382041 1.047055697 1.060435799 1.012363798 1.105329526 1.123293981 1.161309038 0.715967967 0.961004474 1 14.10841932 -4.248976739 24.90185804 1.047611984 0.71596775 0.758799092 0.057625429 718.7641118 1436151.341 0.007938884 0.18591285 5.64E-05 4.248976739 -0.331644233 ERPLQQVSPVAS(ph)VPWR ddPTM_HeLa_CUDC101_4h_R1 1 ERPLQQVSPVASVPWR 16 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 ERPLQQVS(0.104)PVAS(0.896)VPWR 92.133 0.0042185 32075000 1638.6 1409.2 1208.1 1389.5 1568.7 1390.1 1274 1466.7 1530.1 1386.6 TRUE FALSE FALSE 1446.525792 1452.615782 1273.41354 1446.169816 1452.980126 1363.586159 1323.138607 1633.663199 1467.02863 1378.352442 1.049460028 1.053878339 0.923866423 1.049201766 1.054142672 0.989287005 0.95994215 1.185228937 1.064334916 1 10.42872911 -4.248799056 24.59400881 1.017526863 1.18522907 0.561993447 0.044798581 887.1902734 1726149.137 0.005831319 0.136612649 5.64E-05 4.248799056 0.167702207 TSQEELLAEVVQGQSRT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 TSQEELLAEVVQGQSRTPR 19 1 H0YJA2;Q6PJT7-5;Q6PJT7-2;Q6PJT7;Q6PJT7-9;G3V5I6;G3V256;Q6PJT7-10;Q6PJT7-4;Q6PJT7-3;Q6PJT7-11;A0A087WTC9 H0YJA2 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 TSQEELLAEVVQGQS(0.054)RT(0.946)PR 78.794 0.0087152 10385000 3104 2683.3 2374.3 2519.3 2991.2 2747.2 2751.2 3151.2 2622.1 2742.6 TRUE FALSE FALSE 2740.153825 2765.969293 2502.66184 2622.047943 2770.545135 2694.801737 2857.314706 3509.91987 2514.015928 2726.286893 1.00508638 1.014555474 0.917974497 0.961765231 1.01623389 0.988451268 1.048060904 1.287435992 0.922139168 1 11.41272167 -4.248649847 2.633037563 0.994653004 1.35258127 0.862919058 0.036502713 0.109825303 0.955719486 0.004144602 0.087349188 5.64E-05 4.248649847 0.357928266 ADAASSLTVDVT(ph)PPTAK ddPTM_HeLa_CUDC101_4h_R1 2 ADAASSLTVDVTPPTAK 17 0 Q9H8Y8-2;Q9H8Y8;Q9H8Y8-3 Q9H8Y8-2 GORASP2 Golgi reassembly-stacking protein 2 1 0 ADAASSLTVDVT(1)PPTAK;ADAASSLT(0.012)VDVT(0.986)PPT(0.002)AK ; 231.37 1.29E-42 88258000 11250.8 10073.8 8976.5 8722.4 11502.8 10346.2 9426.3 9838.4 11159.6 10492.5 TRUE FALSE FALSE 9931.998279 10384.16184 9461.796742 9078.137173 10654.26136 10148.86347 9789.875549 10958.36369 10699.59656 10430.09014 0.952244721 0.995596557 0.907163468 0.870379551 1.02149274 0.973036986 0.938618498 1.050648991 1.025839319 1 13.34846401 -4.248463708 23.78668918 0.967115629 1.050649098 0.22742637 0.04724226 1248.906265 2289384.136 0.006236225 0.145761197 5.64E-05 4.248463708 0.083533469 ALEESESSQLIS(ph)PPLAQAIR ddPTM_HeLa_CUDC101_4h_R1 1 ALEESESSQLISPPLAQAIR 20 0 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 ALEESES(0.015)S(0.011)QLIS(0.974)PPLAQAIR 161.95 5.81E-06 6995500 1092.6 1119.8 987.37 1057.9 953.32 954.16 755.99 430.57 1195.1 1314 TRUE FALSE FALSE 964.5270843 1154.299711 1040.750209 1101.045735 882.9954829 935.9609877 785.1487875 479.5843484 1145.837472 1306.18427 0.738431098 0.883718888 0.796786666 0.842948243 0.67601142 0.716561215 0.60110109 0.367164388 0.877240294 1 10.35114272 -3.74938043 0.264213914 0.931915144 7.71E-48 0.786786159 0.077659229 5.272251614 0.228968223 0.05600927 1.671831012 0.000178082 3.74938043 -0.931915144 down LRRPYY(ph)PRK ddPTM_HeLa_CUDC101_4h_R1 1 LRRPYYPRK 9 3 A0A087WZI3;Q6NTF7-4;Q6NTF7-2;Q6NTF7-3;Q6NTF7 A0A087WZI3 APOBEC3H DNA dC->dU-editing enzyme APOBEC-3H 1 0 LRRPY(0.13)Y(0.87)PRK 71.692 0.027202 24650000 3393 3013.9 2822.8 2669.7 4173.7 3916.6 3216.3 2879.4 3696.7 3621.9 TRUE FALSE FALSE 2995.277683 3106.754687 2975.409107 2778.581905 3865.814466 3841.897381 3340.353768 3207.179257 3544.320461 3600.356778 0.831939129 0.862901895 0.826420627 0.771751823 1.07373094 1.067087963 0.927784099 0.890794845 0.984435899 1 11.81392416 -4.248456236 20.0546931 0.91943049 0.890794595 0.006497519 0.098847527 989.1256682 1527389.01 0.015102083 0.285882818 5.64E-05 4.248456236 -0.028635895 S(ph)MDEFTASTPADLGEAGR ddPTM_HeLa_CUDC101_4h_R1 4 SMDEFTASTPADLGEAGR 18 0 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 1 0 S(1)MDEFTASTPADLGEAGR;S(1)MDEFTASTPADLGEAGR;S(1)MDEFTASTPADLGEAGR;S(1)MDEFTASTPADLGEAGR ;;; 179.09 4.88E-08 37825500 4225 3325.97 3056.21 3348.82 3444.56 3110.14 2886.93 1496.01 3749.05 3853.03 TRUE FALSE FALSE 3729.751905 3428.439193 3221.437957 3485.399354 3190.461671 3050.819261 2998.279857 1666.309731 3594.512572 3830.112006 0.973797084 0.895127659 0.841081919 0.909999329 0.832994353 0.79653526 0.782817801 0.435055092 0.938487586 1 11.90317087 -3.746949318 0.434027085 0.98541086 6.01E-24 0.825752731 0.063351224 1.929824239 0.178008218 0.014286816 1.077612603 0.000179081 3.746949318 -0.98541086 down LDPPPS(ph)PHANR ddPTM_HeLa_CUDC101_4h_R1 2 LDPPPSPHANR 11 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3;H7C211;H7C0A7 A0A087X1U1 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" 1 0 LDPPPS(1)PHANR;LDPPPS(1)PHANR ; 139.78 0.0014251 56960000 8665.2 6907.6 7396.3 7670.6 8075.7 6608.2 6548.9 8249.4 7202.7 7422 TRUE FALSE FALSE 7649.478392 7120.414968 7796.166351 7983.440223 7479.9717 6482.159595 6801.493267 9188.478351 6905.801657 7377.853614 1.036816233 0.965106566 1.056698433 1.082081679 1.013841165 0.878596938 0.921879672 1.245413481 0.936017712 1 12.84898545 -4.248327908 24.69563277 1.006893839 1.245413664 0.587764199 0.062914196 1050.889834 1979324.82 0.008508013 0.214892552 5.65E-05 4.248327908 0.238519824 RPPEEDFRHS(ph)PEEDFR ddPTM_HeLa_CUDC101_4h_R1 1 RPPEEDFRHSPEEDFR 16 2 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 RPPEEDFRHS(1)PEEDFR 78.501 0.0076305 77672000 3323.4 3092.1 3301.3 2700.3 3420.6 3056.4 2724.5 3504.9 3252 3329.7 TRUE FALSE FALSE 2933.83609 3187.363936 3479.778264 2810.429906 3168.269153 2998.104262 2829.584878 3903.883649 3117.951184 3309.894796 0.886383487 0.962980437 1.051325942 0.849099466 0.957211437 0.90580047 0.854886651 1.179458529 0.94200915 1 11.69256965 -4.248250501 24.6563965 0.940420563 1.179458717 0.595973116 0.060346726 1077.506266 2014339.494 0.008882983 0.224395134 5.65E-05 4.248250501 0.239038155 LDTGS(ph)PEPETR ddPTM_HeLa_CUDC101_4h_R1 1 LDTGSPEPETR 11 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 LDTGS(1)PEPETR 182.41 1.35E-10 151460000 5156.7 4408.3 5125.8 4587.4 4399.4 4350.9 4436.6 3743.8 4501.2 4336.6 TRUE FALSE FALSE 4552.239443 4544.114498 5402.916253 4774.494 4074.865027 4267.913832 4607.721148 4169.979059 4315.658631 4310.80571 1.056006637 1.054121852 1.253342557 1.107564182 0.945267614 0.990050148 1.068877017 0.96733171 1.001125757 1 12.07374183 -4.248085564 22.39925216 1.043602265 0.96733149 0.081803803 0.080764105 1175.409785 1971438.072 0.011620906 0.258551418 5.65E-05 4.248085564 -0.076270775 SGTGATATVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SGTGATATVSPK 12 0 Q86TU7;C9K0W5;Q6NXR6;Q86TU7-3;Q86TU7-2 Q86TU7 SETD3 Histone-lysine N-methyltransferase setd3 1 0 SGTGATAT(0.001)VS(0.999)PK;SGTGATAT(0.002)VS(0.998)PK ; 117.27 0.0039274 14076100 4617.7 4127 4897.2 4669.1 4677.2 4153.7 4122.7 4210.6 4855.2 4557.7 TRUE FALSE FALSE 4076.420206 4254.147978 5161.957445 4859.52608 4332.172274 4074.475093 4281.71392 4689.917684 4655.066601 4530.590598 0.899754705 0.938983094 1.139356411 1.072603224 0.956204755 0.899325376 0.945067498 1.035166957 1.027474564 1 12.14548341 -4.248020515 22.44178199 0.967611312 1.035167134 0 0.074751398 1333.117141 2229340.576 0.011179532 0.253767293 5.65E-05 4.248020515 0.067555822 SSASAPDVDDPEAFPALA ddPTM_HeLa_CUDC101_4h_R1 4 SSASAPDVDDPEAFPALA 18 0 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 0 ;;; ;;; 163.66 8.67E-05 91258000 24740.1 24272.5 22175.7 22691.9 25444.1 24034.3 22952.2 24339.1 24403.3 25311.5 FALSE FALSE TRUE 21840.10298 25020.30696 23374.58542 23617.37376 23567.13943 23575.88577 23837.47404 27109.76476 23397.38565 25160.94607 0.868015969 0.99441042 0.929002644 0.938652056 0.936655536 0.937003152 0.947399751 1.07745411 0.929908819 1 14.61889855 -4.261022358 4.773480007 0.939877605 1.08526786 0.578134058 0.034627607 0.137397131 8.818110393 0.006666502 0.066208344 5.48E-05 4.261022358 0.145390256 SEEPAGQILSHLSS(ph)ELK ddPTM_HeLa_CUDC101_4h_R1 3 SEEPAGQILSHLSSELK 17 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SEEPAGQILS(0.003)HLS(0.114)S(0.883)ELK;SEEPAGQILS(0.005)HLS(0.398)S(0.596)ELK;SEEPAGQILS(0.045)HLS(0.097)S(0.859)ELK ;; 107.06 0.00086628 13961300 8293.3 6145.17 5891.8 5866.33 7080.7 7201.3 7370 9256.2 7383.2 7421.9 TRUE FALSE FALSE 7321.171946 6334.495404 6210.32853 6105.584294 6558.370868 7063.947201 7654.263369 10309.88839 7078.861371 7377.754209 0.992330693 0.858593987 0.841764086 0.82756678 0.88893865 0.957465782 1.037478771 1.397429096 0.959487287 1 12.84896601 -4.247991738 2.560321888 0.953769001 1.500492063 0.813784586 0.06744206 0.219996299 1.76572907 0.012008205 0.262575394 5.65E-05 4.247991738 0.546723062 SIS(ph)ADDDLQESSR ddPTM_HeLa_CUDC101_4h_R1 2 SISADDDLQESSR 13 0 P18615;P18615-3;A0A0A0MT02;A2ABK4;A0A0G2JI50;E9PD43;A0A0A0MSN9;P18615-4 P18615 NELFE Negative elongation factor E 1 0 SIS(1)ADDDLQESSR;S(0.319)IS(0.68)ADDDLQES(0.001)SR ; 180.95 8.55E-11 226010000 2367.8 1941.24 1726.29 1615.31 2215.17 2242.87 2518.33 4732.9 2039.95 2528.13 TRUE FALSE FALSE 2090.250073 2001.047303 1819.618459 1681.189324 2051.761322 2200.090992 2615.462832 5271.674205 1955.862398 2513.09257 0.831744162 0.796248943 0.724055485 0.668972303 0.816428868 0.875451632 1.040734775 2.097684052 0.778269142 1 11.2952481 -4.247842585 2.962502347 0.868900395 2.325822018 0.937760589 0.09811742 0.091001867 1.11559606 0.017265297 0.318329426 5.65E-05 4.247842585 1.456921623 up ELNSNHDGADETS(ph)EK ddPTM_HeLa_CUDC101_4h_R1 1 ELNSNHDGADETSEK 15 0 Q01105-2 Q01105-2 SET Protein SET 1 0 ELNSNHDGADET(0.095)S(0.905)EK 118.05 0.00065617 4247300 2407.1 1531 1342.5 1436.4 2273.3 2194 1906.9 1436.5 2335.9 1789.2 TRUE FALSE FALSE 2124.943387 1578.168295 1415.079611 1494.982601 2105.603188 2152.153105 1980.449772 1600.025353 2239.613213 1778.557759 1.194756468 0.887330359 0.795633206 0.840558927 1.183882378 1.210055223 1.113514454 0.899619563 1.259229959 1 10.79649211 -4.247790829 22.91285545 1.0586 0.899619231 0.078259946 0.158082771 1548.789651 2599920.09 0.02258973 0.536677855 5.65E-05 4.247790829 -0.158980769 VEPSSQSPGRS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 5 VEPSSQSPGRSPR 13 1 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EKH8;K7EIZ7 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 VEPS(0.034)S(0.121)QS(0.101)PGRS(0.745)PR;VEPSSQSPGRS(1)PR;VEPSSQS(0.001)PGRS(0.999)PR;VEPS(0.011)S(0.011)QS(0.011)PGRS(0.968)PR;VEPSSQS(0.016)PGRS(0.984)PR ;;;; 123.72 0.0017923 889095000 21360 20635.3 20158.4 19986.2 19576.9 17769.5 17178.5 21806.7 19676.2 20410.4 TRUE FALSE FALSE 18856.21318 21271.04913 21248.22408 20801.32362 18132.75109 17430.57639 17841.0805 24289.08658 18865.13871 20288.99803 0.929381192 1.048403135 1.047278138 1.025251399 0.89372334 0.859114697 0.87934754 1.197155549 0.929821112 1 14.30841 -4.247780455 24.34812089 0.96436645 1.197155773 0.535465368 0.066803586 1078.978265 1923317.894 0.009907689 0.255281908 5.65E-05 4.247780455 0.232789323 AQQELVPPQQQAS(ph)PPQLPK ddPTM_HeLa_CUDC101_4h_R1 2 AQQELVPPQQQASPPQLPK 19 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 AQQELVPPQQQAS(1)PPQLPK;AQQELVPPQQQAS(1)PPQLPK ; 94.019 0.0016374 89259000 10157.4 8369.7 7986.6 8449.1 9399.3 8687.6 7897.5 8995 9296 8656.3 TRUE FALSE FALSE 8966.76497 8627.560536 8418.379754 8793.690818 8705.932365 8521.898505 8202.10922 10018.95444 8912.814945 8604.811943 1.042064025 1.002643706 0.978333961 1.021950378 1.011751613 0.990364294 0.953200288 1.16434322 1.035794275 1 13.07092795 -4.247716718 24.84161578 1.010615486 1.164343331 0.773028055 0.025841257 850.1806808 1539022.279 0.003845868 0.101544798 5.65E-05 4.247716718 0.153727845 LGYLVS(ph)PPQQIR ddPTM_HeLa_CUDC101_4h_R1 1 LGYLVSPPQQIR 12 0 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 LGYLVS(1)PPQQIR 100.02 0.011607 26531000 1561.6 1412.5 997.37 1156.8 1351.4 1351.9 1209.5 723.73 1099.5 1352.7 TRUE FALSE FALSE 1378.551615 1456.017451 1051.290839 1203.979304 1251.709914 1326.11476 1256.15082 806.1164978 1054.178145 1344.65408 1.025209112 1.082819345 0.781829955 0.895382182 0.930878754 0.986212573 0.934181392 0.599497305 0.783977203 1 10.39301936 -4.247565194 3.033551603 0.985129825 0.530515785 0.440791084 0.102086274 0.193105537 2.540872806 0.011915832 0.214100751 5.66E-05 4.247565194 -0.45461404 KET(ph)ELQMQLT(ph)ES(ph)LK ddPTM_HeLa_CUDC101_4h_R1 1 KETELQMQLTESLK 14 1 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 3 0 KET(1)ELQMQLT(1)ES(1)LK 52.784 0.0033271 0 1218.8 925.19 850.05 816.31 1323.3 1165.4 933.12 1132.2 1200.1 1073.4 TRUE FALSE FALSE 1075.934112 953.6940073 896.0062743 849.6026502 1225.682795 1143.171937 969.110751 1261.085071 1150.63137 1067.015369 1.008358589 0.893795942 0.839731367 0.796242186 1.1487021 1.07137345 0.908244416 1.181880888 1.078364383 1 10.05936524 -4.247521128 23.79368953 0.981242802 1.181881156 0.254804394 0.106729701 1368.695009 2339748.618 0.014478011 0.373449758 5.66E-05 4.247521128 0.200638354 TDS(ph)VIIADQTPTPTR ddPTM_HeLa_CUDC101_4h_R1 1 TDSVIIADQTPTPTR 15 0 K7ELQ4;P17544-4;P17544-2;P17544;K7ESA4;P17544-5;P17544-3;P17544-1 K7ELQ4 ATF7 Cyclic AMP-dependent transcription factor ATF-7 1 0 T(0.003)DS(0.997)VIIADQTPTPTR 135.57 0.00054901 4360500 941.78 334.29 533.7 536.2 569.63 712.93 864.13 2388.9 574.36 615.41 TRUE FALSE FALSE 831.385976 344.5890787 562.5534364 558.0685537 527.6095298 699.3320481 897.4597836 2660.84272 550.6846377 611.749514 1.359030056 0.563284597 0.919581338 0.912250097 0.862460072 1.143167313 1.467038 4.349562458 0.900179935 1 9.25679724 -4.247475158 3.133600781 1.072425919 4.903670643 0.955050807 0.218405739 0.063859727 0.927496617 0.035201513 0.609416624 5.66E-05 4.247475158 3.831244724 up LSEGS(ph)QPAEEEEDQETPSR ddPTM_HeLa_CUDC101_4h_R1 2 LSEGSQPAEEEEDQETPSR 19 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 LS(0.001)EGS(0.999)QPAEEEEDQETPSR;LSEGS(1)QPAEEEEDQETPSR ; 310.98 7.08E-145 39802000 2847.2 2316.35 2165.01 2336.13 2774.26 3112.4 3269.8 8980.6 2933 3026 TRUE FALSE FALSE 2513.455532 2387.713998 2282.056989 2431.407479 2569.608367 3053.036156 3395.917281 10002.9152 2812.100499 3008.001217 0.835589932 0.793787577 0.758662256 0.808313329 0.854257755 1.014971715 1.128961405 3.325435889 0.934873458 1 11.55458944 -4.247193089 3.367153337 0.894311917 3.686764656 0.987033971 0.083698141 0.032369971 0.588310069 0.014758544 0.236003197 5.66E-05 4.247193089 2.792452739 up S(ph)TVLGLPQHVQK ddPTM_HeLa_CUDC101_4h_R1 1 STVLGLPQHVQK 12 0 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 S(0.5)T(0.5)VLGLPQHVQK 156.36 2.70E-08 0 1848.3 1197 852.44 1046.3 1150.9 1404 1392.5 1710 1106 918.43 TRUE FALSE FALSE 1631.645076 1233.878151 898.5254849 1088.972636 1066.0004 1377.221039 1446.209191 1904.659488 1060.410212 912.9671375 1.787189274 1.351503357 0.984181629 1.192784046 1.167621874 1.508511076 1.584075847 2.086230062 1.161498775 1 9.834419121 -4.24718415 1.475044469 1.325618183 2.399734227 0.544700961 0.229065524 1.073878185 2.034012085 0.046632576 1.700942162 5.66E-05 4.24718415 1.074116044 SSGNSSSSGSGSGSTSAGSSS(ph)PGAR ddPTM_HeLa_CUDC101_4h_R1 4 SSGNSSSSGSGSGSTSAGSSSPGAR 25 0 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNSSSSGSGSGSTSAGS(0.001)S(0.094)S(0.905)PGAR;SSGNSSSSGSGSGSTSAGS(0.001)S(0.132)S(0.867)PGAR;SSGNSSSSGSGSGSTSAGS(0.004)S(0.062)S(0.934)PGAR;SSGNSSSSGS(0.001)GS(0.002)GS(0.027)T(0.066)S(0.027)AGS(0.011)S(0.243)S(0.623)PGAR ;;; 208.88 1.09E-29 143871280 3176.983 2282.85 2008.15 2288.24 2347.37 2161.2 1769.32 1379.66 2223.82 2744.4 TRUE FALSE FALSE 2804.581869 2353.181903 2116.716663 2381.564318 2174.209192 2119.978711 1837.563265 1536.714918 2132.153198 2728.076187 1.028043822 0.862579247 0.775900861 0.872983067 0.796975247 0.777096593 0.673574761 0.563296188 0.781559257 1 11.41366822 -4.246985922 0.295343491 1.036413873 0.218098903 0.498045303 0.093179082 2.139252899 0.136940143 0.029555473 0.633950227 5.66E-05 4.246985922 -0.81831497 KDSGSSSVSSTSSSSSS(ph)SPGDK ddPTM_HeLa_CUDC101_4h_R1 1 KDSGSSSVSSTSSSSSSSPGDK 22 1 Q9H7S9 Q9H7S9 ZNF703 Zinc finger protein 703 1 0 KDSGSSSVSSTSSSS(0.112)S(0.112)S(0.665)S(0.112)PGDK 186.54 8.95E-14 23433000 8971.6 7683.3 9604.3 10183 10125 8171.8 7443 5003.4 8713.7 8762.5 TRUE FALSE FALSE 7919.962648 7920.013366 10123.53751 10598.30675 9378.098922 8015.93653 7730.079003 5572.966832 8354.517598 8710.38026 0.909255671 0.909261494 1.162238296 1.21674444 1.076657808 0.920274005 0.887455975 0.639807524 0.959144991 1 13.08851999 -4.246869375 1.682156467 0.993622282 0.508858687 0.558694556 0.102028684 0.714774141 1.876162487 0.016966332 0.564530869 5.66E-05 4.246869375 -0.484763595 LREVIEIEDASPT(ph)K ddPTM_HeLa_CUDC101_4h_R1 3 LREVIEIEDASPTK 14 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2 P46100-4 ATRX Transcriptional regulator ATRX 1 0 LREVIEIEDAS(0.238)PT(0.762)K;LREVIEIEDAS(0.356)PT(0.644)K;LREVIEIEDAS(0.364)PT(0.636)K ;; 99.371 0.0094208 20472600 11369.8 9609.3 8635.1 9738.5 9527.2 9876.4 8284.6 7446.1 10377 9372.6 TRUE FALSE FALSE 10037.04928 9905.351143 9101.939626 10135.67812 8824.397437 9688.024125 8604.139797 8293.733926 9949.255668 9316.851358 1.07730057 1.063165093 0.976933008 1.08788664 0.94714374 1.039838863 0.923502959 0.890186352 1.067877471 1 13.18562676 -4.246841362 0.827902337 1.036847092 0.788052606 0.564137127 0.044078021 1.37823885 0.67033839 0.00712269 0.315062377 5.66E-05 4.246841362 -0.248794486 NMVVDDDS(ph)PEMYK ddPTM_HeLa_CUDC101_4h_R1 1 NMVVDDDSPEMYK 13 0 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;H7BXY5;Q0ZGT2-3 E7ETM8 NEXN Nexilin 1 0 NMVVDDDS(0.953)PEMY(0.047)K 80.24 0.030641 5262400 3875.9 3618.6 2965 2588.2 3969.1 3810.2 3126.3 3485.7 3411.7 3499.1 TRUE FALSE FALSE 3421.572877 3730.084777 3125.296869 2693.757983 3676.307401 3737.526783 3246.882438 3882.497998 3271.068282 3478.287198 0.983694756 1.072391256 0.898516049 0.774449558 1.056930377 1.074530817 0.933471635 1.116209726 0.940425013 1 11.76416134 -4.24675983 23.50973665 0.98356988 1.116209941 0.185500017 0.087836005 1558.229998 2495454.936 0.011758561 0.321341563 5.67E-05 4.24675983 0.13264006 S(ph)SPNPFVGSPPK ddPTM_HeLa_CUDC101_4h_R1 1 SSPNPFVGSPPK 12 0 P98082-3;P98082 P98082-3 DAB2 Disabled homolog 2 1 0 S(0.5)S(0.5)PNPFVGSPPK 124.47 0.0026169 12930000 1438.6 1402.5 1377.3 1367.8 1325.7 1554.5 1785.6 2448.5 1147.3 1482.8 TRUE FALSE FALSE 1269.969489 1445.709363 1451.761004 1423.584796 1227.905752 1524.850502 1854.47119 2727.227343 1100.007808 1473.98024 0.861591936 0.980820043 0.98492569 0.96580996 0.833054419 1.034512174 1.258138434 1.850246882 0.746283959 1 10.52550147 -4.246366473 1.594486298 0.936841478 2.215549926 0.925816967 0.080674854 0.162744895 0.373226158 0.009386227 0.325833298 5.67E-05 4.246366473 1.278708448 DGLNQTTIPVS(ph)PPSTTKPSR ddPTM_HeLa_CUDC101_4h_R1 4 DGLNQTTIPVSPPSTTKPSR 20 1 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 DGLNQTTIPVS(0.998)PPSTT(0.001)KPSR;DGLNQTTIPVS(0.971)PPS(0.008)T(0.008)T(0.008)KPS(0.005)R;DGLNQTTIPVS(0.998)PPS(0.001)T(0.001)T(0.001)KPSR;DGLNQTTIPVS(0.998)PPSTTKPSR ;;; 133.76 1.05E-05 561830000 8875.89 8329.68 7893.29 8099.89 9226.12 8505.45 7475.1 9050.11 9067.14 9140.9 TRUE FALSE FALSE 7835.471629 8586.307568 8320.025133 8430.238525 8545.527509 8343.222712 7763.417111 10080.33794 8693.388651 9086.52952 0.862317303 0.944949064 0.915643879 0.927773195 0.940461096 0.918196842 0.854387486 1.109371616 0.956733661 1 13.14951367 -4.246207594 24.4958023 0.927882838 1.109371791 0.65112292 0.040529936 1386.757319 2230139.757 0.007368943 0.23099889 5.67E-05 4.246207594 0.181488953 SSDQPLTVPVSPK(ac)FSTR ddPTM_HeLa_CUDC101_4h_R1 1 SSDQPLTVPVSPKFSTR 17 1 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 0 1 SSDQPLTVPVSPK(1)FSTR 187.89 9.83E-12 599220 0 153.53 0 0 0 81.614 0 107.28 0 193.91 FALSE TRUE FALSE 0 158.2600773 0 0 0 80.05734893 0 119.4923216 0 192.7566147 0 0.821035779 0 0 0 0.415328673 0 0.61991295 0 1 7.590636559 -9.418851766 0.910553758 1.049475205 0.2059468 0 0.419000618 0.416715809 0.556665028 0.253449897 0.050658075 3.81E-10 9.418851766 -0.843528405 HQNS(ph)LPELEAAEAGAPGSGPVDLFR ddPTM_HeLa_CUDC101_4h_R1 2 HQNSLPELEAAEAGAPGSGPVDLFR 25 0 Q96BZ8 Q96BZ8 LENG1 Leukocyte receptor cluster member 1 1 0 HQNS(1)LPELEAAEAGAPGSGPVDLFR;HQNS(1)LPELEAAEAGAPGSGPVDLFR ; 126.91 2.17E-10 12010100 4459.1 3705.8 2355.35 3023.65 3460 3833.9 4617.6 8408.6 4458.5 4062.37 TRUE FALSE FALSE 3936.411058 3819.971306 2482.687346 3146.967516 3204.762693 3760.774745 4795.702379 9365.801035 4274.718743 4038.206843 0.974791835 0.945957316 0.61479945 0.779298248 0.793610337 0.931298195 1.187582154 2.319297005 1.058568545 1 11.97949909 -4.246159697 2.554911769 0.926694879 2.647771057 0.918039042 0.127727436 0.118442166 0.941328007 0.020074805 0.445222294 5.67E-05 4.246159697 1.721076177 up AEGEPQEES(ph)PLKSK ddPTM_HeLa_CUDC101_4h_R1 4 AEGEPQEESPLKSK 14 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEPQEES(0.5)PLKS(0.5)K;AEGEPQEES(0.996)PLKS(0.004)K;AEGEPQEES(0.85)PLKS(0.15)K;AEGEPQEES(0.684)PLKS(0.316)K ;;; 184.92 2.98E-10 376757000 16283.3 14383.1 15033.6 14223.9 15453.8 13825.2 14772.3 10748.2 16232.7 13949.7 TRUE FALSE FALSE 14374.59626 14826.22626 15846.36189 14804.01212 14313.80396 13561.50734 15342.07256 11971.73164 15563.58124 13866.72656 1.03662506 1.069194391 1.142761546 1.067592417 1.032241019 0.977989094 1.106394684 0.863342303 1.122368799 1 13.75933964 -4.245994676 24.55032445 1.035625816 0.863342141 0.487770631 0.055464408 1486.044008 2362111.623 0.007169227 0.227282772 5.68E-05 4.245994676 -0.172283675 SSDVSWSDTRR ddPTM_HeLa_CUDC101_4h_R1 2 SSDVSWSDTRR 11 1 O14776;O14776-2;G3V220 O14776 TCERG1 Transcription elongation regulator 1 0 0 ; ; 143.4 8.01E-06 5735000 4813.4 4768.7 4519.8 4604.1 5655 4961.9 4243.1 4781 4728.1 3623.8 FALSE FALSE TRUE 4249.180549 4915.617995 4764.15406 4791.875099 5237.841916 4867.260025 4406.757788 5325.249715 4533.205717 3602.245476 1.179592167 1.364598284 1.322551195 1.330246684 1.454049134 1.351173888 1.223336338 1.478313943 1.258438867 1 11.81468078 -7.793739463 0.671285467 1.021654656 1.37177397 0.404275135 0.102308582 0.191798076 0.193993694 0.025045461 0.020192354 1.61E-08 7.793739463 0.350119314 NLATS(ph)ADTPPSTVPGTGK ddPTM_HeLa_CUDC101_4h_R1 1 NLATSADTPPSTVPGTGK 18 0 J3KRA9;Q96Q15-4;Q96Q15-3;Q96Q15-2;Q96Q15 J3KRA9 SMG1 Serine/threonine-protein kinase SMG1 1 0 NLAT(0.041)S(0.797)ADT(0.013)PPS(0.094)T(0.028)VPGT(0.028)GK 87.831 0.006073 14911000 3265 2398.2 2346.6 2372.6 2781.4 2555.3 2396.2 1649.3 2633.9 2311.7 TRUE FALSE FALSE 2882.281649 2472.085699 2473.464294 2469.364883 2576.221663 2506.56191 2488.622237 1837.049645 2525.329527 2297.949906 1.254283935 1.07577876 1.076378683 1.074594741 1.121095659 1.090781789 1.082974973 0.799429805 1.098948903 1 11.16613163 -4.245896604 3.399254669 1.111094962 0.753437813 0.678632203 0.061094881 0.218380063 4.078812114 0.012837013 0.205474063 5.68E-05 4.245896604 -0.357657149 SSEEIESAFR ddPTM_HeLa_CUDC101_4h_R1 1 SSEEIESAFR 10 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2;A0A0D9SFH4 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 119.75 0.027165 28785000 926.13 711.29 693.26 949.07 945.6 694.92 609.07 502.63 726.74 710.58 FALSE FALSE TRUE 817.5704453 733.2040018 730.7397326 987.7771768 875.8449719 681.6655588 632.5620339 559.8473675 696.7834696 706.3534386 1.157452347 1.038012929 1.034524209 1.398417737 1.239952868 0.965048829 0.895531896 0.792588153 0.986451586 1 9.464246436 -4.899899602 2.918675309 1.104434307 0.8355862 0.455472989 0.121986175 0.199177072 3.356135519 0.018527835 0.068606175 1.26E-05 4.899899602 -0.268848107 INS(ph)LLEYSR ddPTM_HeLa_CUDC101_4h_R1 1 INSLLEYSR 9 0 Q6P4F7-3;Q6P4F7 Q6P4F7-3 ARHGAP11A Rho GTPase-activating protein 11A 1 0 INS(1)LLEYSR 84.169 0.036895 3869000 1371.7 1360.5 916.04 1101.9 926.1 1215.1 1371 2308.9 1036.6 1186.9 TRUE FALSE FALSE 1210.911405 1402.415392 965.5638933 1146.840245 857.7834481 1191.923992 1423.879929 2571.735843 993.8709092 1179.840266 1.026335039 1.188648525 0.818385269 0.972030094 0.727033542 1.010241832 1.206841274 2.179732221 0.842377513 1 10.20437584 -4.245752368 2.571593865 0.988565235 2.458540053 0.89306391 0.127057675 0.113242875 0.915907389 0.016550045 0.365287242 5.68E-05 4.245752368 1.469974818 up (ac)S(ph)VNYAAGLSPYADKGK ddPTM_HeLa_CUDC101_4h_R1 1 SVNYAAGLSPYADKGK 16 1 Q8N6T7;M0QXA0;Q8N6T7-2;M0R0B2 Q8N6T7 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 0 S(0.571)VNY(0.415)AAGLS(0.014)PYADKGK 69.261 0.0010289 9110700 877.81 1204.7 973.93 946.42 1208.4 848.95 1166.1 424.68 1232.6 1127.9 TRUE FALSE FALSE 774.9144425 1241.815379 1026.583602 985.0190984 1119.258739 832.7576932 1211.076868 473.0238546 1181.791706 1121.191201 0.691152804 1.107585734 0.915618675 0.87854694 0.998276421 0.742743693 1.080169793 0.421894013 1.054050108 1 10.13081661 -4.245712305 24.30346249 0.887539093 0.421893501 0.521953905 0.140913405 1378.673014 2130449.39 0.020260078 0.646854292 5.68E-05 4.245712305 -0.465645591 S(ph)SSLEMTPYNTPQLSPATTPANKK ddPTM_HeLa_CUDC101_4h_R1 1 SSSLEMTPYNTPQLSPATTPANKK 24 1 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7;B4DGD8;A0A0A0MQV8;B0QZ65 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 S(0.176)S(0.176)S(0.176)LEMT(0.157)PY(0.14)NT(0.157)PQLS(0.016)PAT(0.001)TPANKK 44.341 0.026447 62764000 980.47 1125.3 821.28 906.12 723.96 1152.5 758.97 1071.5 884.11 918.07 TRUE FALSE FALSE 865.5407929 1159.969159 865.680881 943.0754902 670.5549131 1130.517983 788.2437271 1193.475229 847.6666116 912.6092788 0.948424274 1.271046861 0.948577777 1.033383631 0.734766705 1.238775464 0.863725304 1.307761445 0.928838476 1 9.833853512 -4.245700393 24.03253884 0.992816912 1.307761849 0.274007729 0.151947487 1596.850086 2438231.703 0.018489023 0.584422883 5.68E-05 4.245700393 0.314944937 VNS(ph)PGTLAR ddPTM_HeLa_CUDC101_4h_R1 1 VNSPGTLAR 9 0 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6;P53814-2 A0A087WVP4 SMTN Smoothelin 1 0 VNS(0.67)PGT(0.33)LAR 94.538 0.022862 24189000 3988.8 3906.8 3884.5 4326.9 4255.9 3675.3 3114 1758.3 4098.3 3651.5 TRUE FALSE FALSE 3521.238911 4027.163877 4094.50782 4503.369684 3941.950736 3605.199776 3234.108023 1958.457765 3929.366339 3629.780716 0.97009687 1.109478559 1.12803173 1.240672657 1.086002446 0.993227982 0.890992673 0.539552639 1.082535461 1 11.82566668 -4.245679156 1.899996966 1.031015356 0.373484268 0.782859802 0.084029444 0.369741279 1.321492061 0.014346987 0.433373441 5.68E-05 4.245679156 -0.657531088 YKDNPFSLGESFGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 YKDNPFSLGESFGSR 15 1 Q8N6H7;E9PMU9;H0YDN9;A0A0D9SF70;G5E9L0;Q8N6H7-3;Q8N6H7-2;E9PQP3 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 0 YKDNPFSLGES(0.271)FGS(0.728)R 70.987 0.021074 19053000 2362.8 1852.4 2221.8 1743.4 2240 2704 2259.3 2600.8 2357.9 2392.3 TRUE FALSE FALSE 2085.836166 1909.470248 2341.917229 1814.503388 2074.759663 2652.425705 2346.441958 2896.864559 2260.706364 2378.070493 0.877112841 0.802949389 0.984797228 0.763014971 0.872455072 1.115368831 0.986699917 1.218157564 0.95064733 1 11.21557577 -4.245633721 1.052283371 0.919264975 1.344438498 0.517446322 0.091029605 1.314799638 1.107922918 0.014730595 0.629432268 5.68E-05 4.245633721 0.425173523 ITPPAAKPGS(ph)PQAK ddPTM_HeLa_CUDC101_4h_R1 2 ITPPAAKPGSPQAK 14 1 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 ITPPAAKPGS(1)PQAK;ITPPAAKPGS(1)PQAK ; 170.09 2.51E-06 553840000 14965.3 13194.2 12674.5 14380.3 13878.6 12232.3 12207.8 12847.7 12975.2 13012.1 TRUE FALSE FALSE 13211.09022 13600.69766 13359.72181 14966.79079 12854.80333 11998.98926 12678.65894 14310.23024 12440.35676 12934.70345 1.021367847 1.051488943 1.032858763 1.157103512 0.99382281 0.927658628 0.980204841 1.106343898 0.961781367 1 13.65895936 -4.245583891 23.24675097 1.016282774 1.106344079 0.181993972 0.058537524 1520.443495 2229121.044 0.00786863 0.240986641 5.68E-05 4.245583891 0.090061305 SSESGNSVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 SSESGNSVKR 10 1 Q9GZU8;H3BU93;H3BNK9 Q9GZU8 FAM192A Protein FAM192A 0 1 ; SSESGNSVK(1)R;SSESGNSVK(1)R 176.33 0.00038997 8445400 860.92 303.767 1074.98 1306.54 654.39 613.58 661.26 188.74 1083.31 1411.6 FALSE TRUE FALSE 760.0042627 313.1257012 1133.09667 1359.826349 606.1169534 601.8769838 686.7650197 210.2253987 1038.655503 1403.20374 0.54162075 0.223150561 0.807506877 0.96908689 0.431952208 0.428930573 0.489426446 0.149818157 0.740202918 1 10.45450878 -13.52287875 0.150815481 2.822616171 0.341560643 0.280485506 0.235682182 51.19197556 0.525416327 27.66920286 0.54361886 3.00E-14 13.52287875 -2.481055528 AS(ph)SLNENVDHSALLK ddPTM_HeLa_CUDC101_4h_R1 2 ASSLNENVDHSALLK 15 0 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 1 0 AS(0.55)S(0.45)LNENVDHSALLK;AS(0.555)S(0.445)LNENVDHSALLK ; 76.573 0.017289 33666000 7060.2 4890.8 3965.4 4608.7 4887.8 6269.3 6731.9 9388.7 5839.1 6173.5 TRUE FALSE FALSE 6232.614059 5041.479751 4179.781519 4796.662707 4527.236732 6149.723548 6991.551638 10457.47166 5598.409827 6136.779747 1.015616384 0.82151877 0.681103395 0.781625364 0.737721886 1.002109217 1.139286715 1.704065013 0.912271591 1 12.58326609 -4.245569406 1.991556854 0.934741888 1.950981555 0.800187015 0.123949375 0.336285116 1.358267296 0.0217721 0.630042956 5.68E-05 4.245569406 1.016239667 SSGSEGSS(ph)PNWLQALK ddPTM_HeLa_CUDC101_4h_R1 2 SSGSEGSSPNWLQALK 16 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(0.007)S(0.007)GS(0.045)EGS(0.228)S(0.713)PNWLQALK;SSGSEGS(0.144)S(0.856)PNWLQALK ; 132.24 0.00045458 48516000 6100.5 5509.2 4891.4 4736.7 6136.7 5380.9 4511.4 2361.2 5477.1 5283.3 TRUE FALSE FALSE 5385.408638 5678.931922 5155.84388 4929.8831 5684.007867 5278.268298 4685.406209 2629.989464 5251.33162 5251.874697 1.025425957 1.081315197 0.981714945 0.93869016 1.082281699 1.005025558 0.892139756 0.500771556 0.999896594 1 12.35861678 -4.245389119 2.205485142 1.014609686 0.352997053 0.934753504 0.040768022 0.111934599 0.592461606 0.005601753 0.146623289 5.68E-05 4.245389119 -0.661612634 LPEEVATPT(ph)TDEEKDSLIAIDR ddPTM_HeLa_CUDC101_4h_R1 1 LPEEVATPTTDEEKDSLIAIDR 22 1 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 1 0 LPEEVAT(0.205)PT(0.734)T(0.06)DEEKDS(0.001)LIAIDR 58.564 0.0019336 0 1136.4 1076.6 983.41 752.07 1033.2 1004.7 981.19 1102.5 1081.7 975.29 TRUE FALSE FALSE 1003.192915 1109.76877 1036.576119 782.7426653 956.9828944 985.5370214 1019.034827 1228.004144 1037.111868 969.4889317 1.034764691 1.144694626 1.069198508 0.807376588 0.987100382 1.016553144 1.051105169 1.266651019 1.069751118 1 9.921080617 -4.245300292 2.822500611 1.01280134 1.318527839 0.452639708 0.082071716 0.315972434 3.337618716 0.011337843 0.225392979 5.68E-05 4.245300292 0.305726499 RKSQVNGEAGSYEMT(ph)NQHVK ddPTM_HeLa_CUDC101_4h_R1 1 RKSQVNGEAGSYEMTNQHVK 20 2 Q05D32;H0YMH7;Q05D32-2 Q05D32 CTDSPL2 CTD small phosphatase-like protein 2 1 0 RKS(0.03)QVNGEAGS(0.054)Y(0.438)EMT(0.478)NQHVK 49.993 0.035149 9361800 2126.2 1480.8 1816.8 1787.5 2041 1687.7 1498.1 965.77 1582.8 1438.8 TRUE FALSE FALSE 1876.970059 1526.421693 1915.021704 1860.401976 1890.439496 1655.509934 1555.882219 1075.709353 1517.556314 1430.241954 1.312344428 1.067247181 1.338949468 1.300760316 1.321762022 1.157503407 1.087845462 0.752117046 1.061048664 1 10.48204351 -4.245247005 2.289812382 1.18217281 0.634497103 0.563194307 0.116884572 0.459443396 2.690836167 0.020300666 0.511183342 5.69E-05 4.245247005 -0.547675707 SAVCIADPLPTPS(ph)QEK ddPTM_HeLa_CUDC101_4h_R1 2 SAVCIADPLPTPSQEK 16 0 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 0 SAVCIADPLPT(0.009)PS(0.991)QEK;SAVCIADPLPT(0.199)PS(0.801)QEK ; 125.98 0.00051218 21074500 4513.5 3541.9 3257.9 3420.5 3720.4 4429.7 5120.8 22043.8 3829.7 2034.08 TRUE FALSE FALSE 3984.434372 3651.021741 3434.031929 3560.002775 3445.953504 4345.210853 5318.310971 24553.17709 3671.838145 2021.981202 1.970559553 1.805665521 1.698350077 1.760650777 1.704246064 2.148986771 2.630247485 12.14312827 1.815960575 1 10.98155387 -4.245159326 3.3011869 1.595594425 13.79735048 0.989879612 0.313447012 0.032954047 0.559943494 0.062436693 1.038624138 5.69E-05 4.245159326 12.20175605 up VVSSVSSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 VVSSVSSSPR 10 0 P29375;P29375-2 P29375 KDM5A Lysine-specific demethylase 5A 1 0 VVSS(0.013)VS(0.063)S(0.108)S(0.816)PR;VVSS(0.021)VS(0.052)S(0.017)S(0.91)PR ; 143.89 0.00089717 215860000 14228 12549.6 12279.7 12681.8 12517.9 12220.4 11358.3 8867.6 10450.6 11092.3 TRUE FALSE FALSE 12560.21541 12936.2383 12943.57773 13199.01862 11594.47946 11987.31623 11796.39344 9877.05174 10019.82184 11026.32251 1.139111921 1.173214215 1.173879842 1.197046306 1.051527329 1.087154509 1.069839326 0.895770257 0.908718373 1 13.42866408 -4.245047231 3.167553932 1.091814156 0.86260535 0.325905541 0.083835155 0.332801008 4.969975871 0.011001561 0.191843413 5.69E-05 4.245047231 -0.229208805 ACASPSAQVEGS(ph)PVAGSDGSQPAVK ddPTM_HeLa_CUDC101_4h_R1 1 ACASPSAQVEGSPVAGSDGSQPAVK 25 0 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 0 ACASPSAQVEGS(0.939)PVAGS(0.05)DGS(0.011)QPAVK 66.31 0.0011693 10795000 2481.3 2056 2230.5 2163.1 2528.2 2493.8 1975.5 2622.5 2553.1 2507.3 TRUE FALSE FALSE 2190.445775 2119.342923 2351.087577 2251.320568 2341.699723 2446.23492 2051.695697 2921.034799 2447.860137 2492.386468 0.878854786 0.850326765 0.943307792 0.903279085 0.93954118 0.981482989 0.823185217 1.171983092 0.982135062 1 11.28331207 -4.244977531 24.75485214 0.929344885 1.171983307 0.638104727 0.056159308 1604.086992 2412137.617 0.008478648 0.307129964 5.69E-05 4.244977531 0.242638422 AEQPS(ph)PPNS(ph)DSGQDAHPDPDANPDAAR ddPTM_HeLa_CUDC101_4h_R1 1 AEQPSPPNSDSGQDAHPDPDANPDAAR 27 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 2 0 AEQPS(0.985)PPNS(0.832)DS(0.183)GQDAHPDPDANPDAAR 87.016 2.97E-05 18852000 1816.1 1333.1 1619.4 1349 1500.3 1619.9 1514.5 1649.8 1631.3 1577.1 TRUE FALSE FALSE 1603.219511 1374.171231 1706.949662 1404.018051 1389.625858 1589.003106 1572.914772 1837.606563 1564.057124 1567.719339 1.022644469 0.876541608 1.088810746 0.895579978 0.88639964 1.013576261 1.003314007 1.172152768 0.997663985 1 10.61445159 -4.244909106 3.566231311 0.990299478 1.196795393 0.427138201 0.066458905 0.247642826 5.388367126 0.009049879 0.13895821 5.69E-05 4.244909106 0.206495915 YDERPGPS(ph)PLPHR ddPTM_HeLa_CUDC101_4h_R1 1 YDERPGPSPLPHR 13 1 P08621;P08621-4 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 0 YDERPGPS(1)PLPHR 110.6 0.0025186 1078400000 3130.2 2969.7 3011.3 2861.1 3205.8 2741.9 2883.4 2447.3 3026.2 3010.8 TRUE FALSE FALSE 2763.282701 3061.192937 3174.099987 2977.788025 2969.314521 2689.602826 2994.613704 2725.89074 2901.458755 2992.891628 0.923281911 1.022821177 1.060546248 0.994953508 0.992122299 0.89866362 1.000575389 0.910788321 0.969449989 1 11.54732432 -4.244876574 22.17200162 0.974953798 0.910788075 0.167974219 0.04485125 1066.932894 1428146.445 0.006922713 0.208328721 5.69E-05 4.244876574 -0.064165723 QS(ph)PGHQS(ph)PLASPK ddPTM_HeLa_CUDC101_4h_R1 1 QSPGHQSPLASPK 13 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 2 0 QS(1)PGHQS(0.995)PLAS(0.005)PK 121.72 0.019626 6469600 4351.9 4056.5 3643.1 4030 4424.5 4094.7 4052 4583 4394.4 4190.8 TRUE FALSE FALSE 3841.776879 4181.475957 3840.057006 4194.360819 4098.11345 4016.60042 4208.286997 5104.710195 4213.260972 4165.872935 0.922202126 1.003745439 0.921789278 1.006838395 0.983734625 0.96416777 1.010181314 1.225363873 1.011375296 1 12.02440312 -4.244847351 2.704152277 0.967121001 1.281979549 0.839597963 0.032179212 0.139802142 1.302593016 0.004767814 0.099924991 5.69E-05 4.244847351 0.314858549 SSFYVNGLTLGGQK ddPTM_HeLa_CUDC101_4h_R1 2 SSFYVNGLTLGGQK 14 0 P07737;K7EJ44;I3L3D5 P07737 PFN1 Profilin-1 0 0 ; ; 256.96 2.18E-55 1086020 1732.03 858.77 259.68 907.25 756.88 908.92 724.82 886.38 268.5 162.702 FALSE FALSE TRUE 1529.004069 885.2276858 273.7190863 944.2515765 701.0464703 891.5838654 752.7765502 987.2819163 257.4323164 161.7342413 9.453805558 5.473347381 1.692400349 5.83829107 4.33455813 5.512647528 4.654404313 6.104346912 1.591699533 1 7.337481338 -5.215274639 23.3371437 4.888236223 5.346860077 0 2.442859233 1980.722023 1001282.358 0.459217955 1.170770938 6.09E-06 5.215274639 0.458623853 ECISSQS(ph)SDPKDASGDGELDLSGIDDLEIDR ddPTM_HeLa_CUDC101_4h_R1 1 ECISSQSSDPKDASGDGELDLSGIDDLEIDR 31 1 Q92994-9;Q92994-3;Q92994-7;Q92994-8;Q92994-5;Q92994 Q92994-9 BRF1 Transcription factor IIIB 90 kDa subunit 1 0 ECIS(0.053)S(0.163)QS(0.384)S(0.384)DPKDAS(0.016)GDGELDLSGIDDLEIDR 65.165 0.00031214 3649200 853.1 776.76 599.9 731.53 865.38 786.82 487 1131.3 925.34 746.92 TRUE FALSE FALSE 753.1009112 800.6910549 632.3324086 761.3649553 801.5426415 771.8127194 505.7837531 1260.082619 887.1970935 742.4772866 1.01430835 1.07840478 0.851652192 1.025438716 1.079551733 1.039510209 0.681211078 1.697132885 1.194914793 1 9.536203082 -4.244761515 24.8180017 0.993323571 1.697133494 0.714793873 0.132833616 1012.897853 1507248.087 0.014517021 0.544036077 5.69E-05 4.244761515 0.703809923 SES(ph)ELIDELSEDFDR ddPTM_HeLa_CUDC101_4h_R1 1 SESELIDELSEDFDR 15 0 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;P20810-2;E9PCH5;P20810-3;H0Y7F0;E7EQ12;E7EQA0;D6RC54;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;E7EVY3 CAST Calpastatin 1 0 SES(1)ELIDELSEDFDR 260.08 7.39E-70 82732000 1479.2 1175.9 1097.3 1024.7 1062.7 1410.2 1619.5 2667.3 1476.9 1549.8 TRUE FALSE FALSE 1305.810418 1212.128085 1156.623357 1066.491695 984.3067382 1383.302785 1681.964657 2970.93465 1416.021557 1540.581721 0.847608667 0.786798953 0.750770531 0.692265578 0.638918874 0.897909384 1.091772436 1.92844989 0.919147318 1 10.5892595 -4.244697564 2.344638298 0.864937937 2.212252366 0.899759905 0.110737881 0.175899583 1.097682754 0.019875533 0.489484444 5.69E-05 4.244697564 1.347314429 S(ph)MPAETIK ddPTM_HeLa_CUDC101_4h_R1 2 SMPAETIK 8 0 Q9H694;Q9H694-2;A6NGY7 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 S(1)MPAETIK;S(1)MPAETIK ; 112.11 0.010631 23629000 6079.9 4912.2 4863.9 5085.1 5459.6 5547.5 5565.6 6593.8 4776.8 5703.2 TRUE FALSE FALSE 5367.223339 5063.53906 5126.857146 5292.492358 5056.856185 5441.69068 5780.267056 7344.411539 4579.898282 5669.277113 0.946720937 0.89315427 0.904322905 0.933539189 0.891975482 0.959856181 1.019577442 1.295475842 0.807845196 1 12.46894907 -4.244666027 2.496104696 0.953903673 1.379419792 0.778851406 0.058290303 0.161443276 1.198014924 0.006436495 0.14796544 5.69E-05 4.244666027 0.425516119 SATRPSPS(ph)PERS(ph)S(ph)TGPEPPAPTPLLAER ddPTM_HeLa_CUDC101_4h_R1 1 SATRPSPSPERSSTGPEPPAPTPLLAER 28 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.029)AT(0.094)RPS(0.307)PS(0.621)PERS(0.734)S(0.734)T(0.481)GPEPPAPTPLLAER 57.902 0.0025725 12209000 1071.3 1207.9 1234.6 1053.3 1498.4 1048.5 1054.4 1199.7 1174.6 1347.3 TRUE FALSE FALSE 945.723838 1245.113967 1301.34621 1096.258127 1387.866017 1028.501609 1095.068561 1336.268999 1126.182491 1339.2862 0.70614021 0.929684759 0.971671485 0.818539105 1.036272917 0.76794759 0.817650896 0.997747157 0.840882622 1 10.38724858 -4.244473196 22.97208802 0.870999 0.99774747 0.112802117 0.100915197 2245.731366 3040549.709 0.017079099 0.568564581 5.70E-05 4.244473196 0.126748469 SES(ph)PPPLSDPK ddPTM_HeLa_CUDC101_4h_R1 4 SESPPPLSDPK 11 0 Q15059;Q15059-2 Q15059 BRD3 Bromodomain-containing protein 3 1 0 S(0.004)ES(0.996)PPPLSDPK;S(0.003)ES(0.997)PPPLSDPK;S(0.002)ES(0.998)PPPLSDPK;SES(1)PPPLSDPK ;;; 177.1 3.11E-07 1483440000 19132.3 16492 16349.4 16216 18201.6 17771.6 16042.9 16011.7 17517.2 17262.7 TRUE FALSE FALSE 16889.6408 17000.09897 17233.29802 16877.35857 16858.90423 17432.63634 16661.68003 17834.40721 16795.1336 17160.02069 0.984243615 0.990680564 1.004270235 0.983527868 0.982452442 1.015886674 0.970959204 1.039299866 0.978736209 1 14.06676367 -4.244436619 24.97318452 0.992275564 1.039299904 0.565944445 0.012801552 1889.854794 2775719.709 0.001559552 0.062548711 5.70E-05 4.244436619 0.04702434 SSGEMEVD ddPTM_HeLa_CUDC101_4h_R1 1 SSGEMEVD 8 0 O95757;E9PDE8 O95757 HSPA4L Heat shock 70 kDa protein 4L 0 0 45.718 0.039426 3389000 4293.7 3241.1 2738.3 2892.1 3220.1 3610.1 3149.1 3089.2 3854.1 4184.6 FALSE FALSE TRUE 3790.398995 3340.954449 2886.340781 3010.052339 2982.559638 3541.243357 3270.561842 3440.862041 3695.232367 4159.709813 0.911217168 0.803170077 0.693880321 0.723620751 0.717011468 0.851319807 0.786247596 0.827188 0.888338979 1 12.02226717 -7.417395349 1.71927926 0.968146916 0.765736219 0.644783344 0.05450953 0.127147048 0.726965187 0.010641425 0.011889269 3.82E-08 7.417395349 -0.202410698 NINMDNDLEVLTS(ph)SPTR ddPTM_HeLa_CUDC101_4h_R1 1 NINMDNDLEVLTSSPTR 17 0 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 NINMDNDLEVLTS(0.5)S(0.5)PTR 265.93 1.23E-70 133980000 5592.3 4980.2 4655.5 4374.1 5913.1 5347.5 4659.9 5156.9 5514.7 5406.6 TRUE FALSE FALSE 4936.779071 5133.634059 4907.190412 4552.494704 5476.902394 5245.505347 4839.633904 5743.940651 5287.381732 5374.441303 0.918566004 0.955193995 0.913060565 0.847063806 1.01906451 0.976009422 0.900490606 1.068751211 0.983801187 1 12.39189907 -4.24443342 23.6422575 0.951287152 1.068751411 0.351032174 0.049623656 1552.0922 2157697.662 0.007223488 0.256112994 5.70E-05 4.24443342 0.117464259 SSGFSGK(ac)GFK ddPTM_HeLa_CUDC101_4h_R1 1 SSGFSGKGFK 10 1 A0A0C4DG89;Q7L014 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 1 SSGFSGK(1)GFK 121.83 0.0028686 3442300 1938.4 1748.7 1616.3 1472.3 1850.2 1692.5 1610.8 1360 2217.3 2318.8 FALSE TRUE FALSE 1711.18369 1802.575374 1703.682067 1532.346758 1713.714432 1660.218382 1672.929096 1514.816903 2125.901956 2305.007674 0.74237657 0.782025758 0.73912208 0.664790306 0.743474502 0.720265881 0.725780271 0.657185188 0.922297127 1 11.17055584 -9.582181694 0.362500321 1.138134492 0.697974811 0.862445987 0.038343527 0.607026183 0.08722436 0.108547715 0.011470585 2.62E-10 9.582181694 -0.440159681 SCPETLTHAVGMSES(ph)PIGPK ddPTM_HeLa_CUDC101_4h_R1 2 SCPETLTHAVGMSESPIGPK 20 0 Q68CZ2;Q68CZ2-2;E9PCX8 Q68CZ2 TNS3 Tensin-3 1 0 SCPETLTHAVGMS(0.097)ES(0.903)PIGPK;SCPETLTHAVGMS(0.039)ES(0.961)PIGPK ; 154.66 8.06E-06 79728000 8614.7 5478.9 4810.7 4928.6 7783.2 6556.7 6451.6 4453.4 7323.6 5080.4 TRUE FALSE FALSE 7604.897925 5647.698415 5070.780994 5129.609611 7209.048842 6431.641872 6700.440373 4960.357055 7021.718108 5050.181555 1.505866243 1.118315917 1.00407895 1.015727763 1.427483104 1.273546664 1.326772176 0.98221361 1.390389243 1 12.30211954 -4.244121556 22.74545208 1.22404197 0.982212917 0.147959629 0.177381004 1868.093252 2453437.394 0.030014302 1.013106233 5.70E-05 4.244121556 -0.241829053 LDLLGNLPGS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 LDLLGNLPGSK 11 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLLGNLPGS(1)K 145.52 7.39E-06 0 3495.3 3118.9 2778.6 3110.3 2698.1 3345.3 2656.7 887.47 2175.9 3445.6 TRUE FALSE FALSE 3085.586233 3214.989612 2928.819521 3237.151478 2499.066538 3281.493976 2759.169809 988.4959975 2086.208481 3425.105418 0.900873362 0.938654208 0.855103468 0.945124626 0.729632006 0.958070943 0.80557223 0.288603087 0.609093218 1 11.74193268 -4.244104191 2.534487914 0.928212611 0.133437791 0.633679344 0.124236603 0.144063361 1.114450383 0.010991217 0.249265541 5.70E-05 4.244104191 -0.79477482 SSGGREDLESSGLQR ddPTM_HeLa_CUDC101_4h_R1 2 SSGGREDLESSGLQR 15 1 Q9UK76-3;Q9UK76;J3KSH8;J3KT51;Q9UK76-2 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 0 0 ; ; 99.161 0.0077225 35548000 3249.9 3202.3 3393.1 3398.5 3596.2 3598.3 3257.7 3841.9 3563.8 3445.3 FALSE FALSE TRUE 2868.951649 3300.959067 3576.54125 3537.10552 3330.915491 3529.668423 3383.35058 4279.246367 3416.898656 3424.807202 0.837697271 0.963837925 1.044304406 1.032789676 0.972584818 1.030618138 0.987895195 1.249485333 0.997690805 1 11.74180706 -1 0.54167535 0.936859135 12.46249255 0.533889831 0.065982632 70.65627057 0.604898526 0.015027703 948.745934 0.1 1 11.52563342 SSSTGSSSSTGGGGQESQPS(ph)PLALLAATCSR ddPTM_HeLa_CUDC101_4h_R1 2 SSSTGSSSSTGGGGQESQPSPLALLAATCSR 31 0 P08047;H3BVI2;P08047-2 P08047 SP1 Transcription factor Sp1 1 0 SSSTGSSSSTGGGGQES(0.014)QPS(0.986)PLALLAATCSR;SSSTGSSSSTGGGGQES(0.002)QPS(0.998)PLALLAATCSR ; 170.83 3.99E-19 20718000 1419.93 1095.39 1026.13 1226.5 1286.61 1338.51 1085.87 1286.58 1372.96 1241.54 TRUE FALSE FALSE 1253.487958 1129.137668 1081.605692 1276.521971 1191.699344 1312.980152 1127.75237 1433.039067 1316.366008 1234.155265 1.015664717 0.914907305 0.876393532 1.034328506 0.965599206 1.063869506 0.913784839 1.161149741 1.066612966 1 10.26930819 -4.243877584 24.06507717 0.990728529 1.161149977 0.416831714 0.062521957 1585.291129 2172280.089 0.007821688 0.304296457 5.70E-05 4.243877584 0.170421449 SEDPPTT(ph)PIR ddPTM_HeLa_CUDC101_4h_R1 1 SEDPPTTPIR 10 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0;H7C151 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SEDPPT(0.324)T(0.676)PIR 127.87 0.014045 20962000 6483.8 5909.3 5899.9 5603.9 6498.8 6150.5 6412.6 9624.2 6433.4 6219.5 TRUE FALSE FALSE 5723.778793 6091.358529 6218.86644 5832.451264 6019.396471 6033.18946 6659.93613 10719.78003 6168.212529 6182.506137 0.925802363 0.985257175 1.005881159 0.943379777 0.973617549 0.975848519 1.077222728 1.733889104 0.997688056 1 12.59397605 -4.243830446 2.881079357 0.968626338 1.886977787 0.987903375 0.024996767 0.039387025 0.440556456 0.004365919 0.085663454 5.70E-05 4.243830446 0.918351449 SSGK(ac)LQAAMASVIVRPSSSTK ddPTM_HeLa_CUDC101_4h_R1 1 SSGKLQAAMASVIVRPSSSTK 21 2 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 0 1 SSGK(1)LQAAMASVIVRPSSSTK 168.75 1.23E-08 760260 0 0 139.89 171.4 60.558 0 0 73.069 0 0 FALSE TRUE FALSE 0 0 147.4528765 178.3904329 56.09075699 0 0 81.3868796 0 0 0 AASSS(ph)SPGS(ph)PVAS(ph)SPSR ddPTM_HeLa_CUDC101_4h_R1 1 AASSSSPGSPVASSPSR 17 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 3 0 AAS(0.024)S(0.136)S(0.799)S(0.048)PGS(0.992)PVAS(0.55)S(0.41)PS(0.041)R 110.26 0.0015678 4477200 2748.2 1747.1 1685.9 1741.9 2306.7 2689.5 2358.1 1443 1671.4 2102.5 TRUE FALSE FALSE 2426.060162 1800.92608 1777.044854 1812.942211 2136.539337 2638.202269 2449.052707 1607.265287 1602.504185 2089.994236 1.160797537 0.861689496 0.85026304 0.867438857 1.022270444 1.262301217 1.171798785 0.769028574 0.766750528 1 11.02928325 -4.243676633 23.39509641 1.047760067 0.769028007 0.077887288 0.161935535 1748.215177 2302463.122 0.020814386 0.77752536 5.71E-05 4.243676633 -0.27873206 ASS(ph)FADMMGILK ddPTM_HeLa_CUDC101_4h_R1 2 ASSFADMMGILK 12 0 E9PPF9;E9PLD2;Q9H019-3;Q9H019 E9PPF9 MTFR1L Mitochondrial fission regulator 1-like 1 0 AS(0.231)S(0.769)FADMMGILK;AS(0.112)S(0.888)FADMMGILK ; 127.56 5.04E-05 77402000 1572.87 1219.56 1262.12 1086.11 1358.99 1375.71 1390.64 1533.06 1254.28 1133.72 TRUE FALSE FALSE 1388.500563 1257.133198 1330.354025 1130.40626 1258.740015 1349.470624 1444.277451 1707.577354 1202.578048 1126.976583 1.232058043 1.115491854 1.180462882 1.003043255 1.116917631 1.197425611 1.281550542 1.515184414 1.067083439 1 10.13824182 -4.243618684 1.229140373 1.110308458 1.711754571 0.775548289 0.06856575 0.730687203 0.88564942 0.013801497 0.56241556 5.71E-05 4.243618684 0.601446113 GGNLPPVS(ph)PNDSGAK ddPTM_HeLa_CUDC101_4h_R1 5 GGNLPPVSPNDSGAK 15 0 Q9UK61-3;Q9UK61;Q9UK61-2;Q9UK61-4;A0A087X0F1 Q9UK61-3 FAM208A Protein FAM208A 1 0 GGNLPPVS(1)PNDSGAK;GGNLPPVS(1)PNDSGAK;GGNLPPVS(1)PNDSGAK;GGNLPPVS(1)PNDSGAK;GGNLPPVS(1)PNDSGAK ;;;; 170.48 7.28E-07 157614000 23254.7 20491.6 21331.5 19964 22567.4 20909.5 19558.8 20364.8 21637 21717.7 TRUE FALSE FALSE 20528.81932 21122.92191 22484.74541 20778.21821 20902.64786 20510.68613 20313.18947 22683.04651 20745.1137 21588.52215 0.9509136 0.978432973 1.041513877 0.962465984 0.968229678 0.950073654 0.940925429 1.050699365 0.960932553 1 14.39797687 -4.243310788 24.05164821 0.97570143 1.050699472 0.40737101 0.028033684 1980.125174 2627012.056 0.004174158 0.167688843 5.71E-05 4.243310788 0.074998043 DGTS(ph)PEEEIEIER ddPTM_HeLa_CUDC101_4h_R1 2 DGTSPEEEIEIER 13 0 Q9H501 Q9H501 ESF1 ESF1 homolog 1 0 DGT(0.184)S(0.816)PEEEIEIER;DGT(0.026)S(0.974)PEEEIEIER ; 193.11 1.60E-16 11926000 2182.62 2320.71 1911 1781.71 2305.6 2426.18 1981.1 2097.94 2400.51 2363.4 TRUE FALSE FALSE 1926.776592 2392.208324 2014.31444 1854.375835 2135.520481 2379.904659 2057.511691 2336.761009 2301.559962 2349.342392 0.820134434 1.018245928 0.857395009 0.789316977 0.908986484 1.01300886 0.875781963 0.994644722 0.97966136 1 11.19804127 -4.243013302 22.45061319 0.912292981 0.99464501 0.074820115 0.078469617 2090.478545 2546899.683 0.011961879 0.447446518 5.71E-05 4.243013302 0.082352029 FEPES(ph)PGFESR ddPTM_HeLa_CUDC101_4h_R1 4 FEPESPGFESR 11 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 FEPES(1)PGFESR;FEPES(0.987)PGFES(0.013)R;FEPES(0.871)PGFES(0.129)R;FEPES(1)PGFESR ;;; 193.15 1.88E-12 175475000 13826.9 11983.9 12900.6 10877.7 13113.4 11969.9 11102.5 12058.7 12657.7 12148.8 TRUE FALSE FALSE 12206.13174 12353.10975 13598.04546 11321.33962 12146.05061 11741.5941 11530.72714 13431.41367 12135.94425 12076.5384 1.010731001 1.022901542 1.125988674 0.937465626 1.005755971 0.972264875 0.954803998 1.112190698 1.004919113 1 13.55991936 -4.242897289 23.99810082 1.00525128 1.11219086 0.312679041 0.048140364 2186.752288 2830127.515 0.006286157 0.272560371 5.72E-05 4.242897289 0.106939579 RGS(ph)SGSVDETLFALPAASEPVIR ddPTM_HeLa_CUDC101_4h_R1 3 RGSSGSVDETLFALPAASEPVIR 23 1 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 0 RGS(0.596)S(0.202)GS(0.202)VDETLFALPAASEPVIR;RGS(0.574)S(0.213)GS(0.213)VDETLFALPAASEPVIR;RGS(0.332)S(0.332)GS(0.332)VDET(0.005)LFALPAASEPVIR ;; 122.21 1.48E-07 27500900 8316.5 7338 4676.66 7005 5607.5 8294.2 6852.7 7545.63 5526.73 6836.3 TRUE FALSE FALSE 7341.652477 7564.075082 4929.494386 7290.694178 5193.845897 8136.001954 7117.010934 8404.594019 5298.91585 6795.637384 1.080347885 1.11307809 0.725391028 1.072849207 0.764291207 1.197238978 1.047291156 1.236763168 0.77975259 1 12.73039316 -4.242884435 1.333773381 1.01127042 1.321503364 0.18058702 0.157099586 1.799748982 2.650138121 0.01940763 0.763046593 5.72E-05 4.242884435 0.310232945 SKTPSS(ph)PCPASK ddPTM_HeLa_CUDC101_4h_R1 1 SKTPSSPCPASK 12 1 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 SKTPS(0.346)S(0.648)PCPAS(0.006)K 89.502 0.012439 47632000 4191.7 3532 4127.6 4149.9 4023.9 3261.1 3000.6 1837.3 4594.5 3596.7 TRUE FALSE FALSE 3700.35528 3640.816734 4350.750541 4319.150859 3727.064914 3198.899951 3116.334147 2046.450805 4405.112765 3575.306668 1.034975632 1.018322922 1.216888772 1.208050458 1.042446218 0.894720439 0.87162709 0.572384692 1.232093684 1 11.80385128 -4.242863829 1.207923145 1.04633147 0.350813233 0.711413643 0.101520548 0.655509024 0.761480334 0.013984218 0.575551953 5.72E-05 4.242863829 -0.695518237 LQQGAGLES(ph)PQGQPEPGAAS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 3 LQQGAGLESPQGQPEPGAASPQR 23 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 0 LQQGAGLES(1)PQGQPEPGAAS(1)PQR;LQQGAGLES(1)PQGQPEPGAAS(1)PQR;LQQGAGLES(1)PQGQPEPGAAS(1)PQR ;; 146.15 7.62E-07 48223400 4648.65 3937.97 3808.35 3468.12 3968.6 4154.43 3415.99 2025.19 4404.99 4034.95 TRUE FALSE FALSE 4103.742294 4059.294188 4014.240921 3609.564924 3675.844285 4075.19117 3547.745879 2255.729444 4223.414448 4010.949938 1.023134758 1.012053067 1.0008205 0.899927693 0.916452297 1.016016463 0.884515123 0.562392819 1.05297112 1 11.96972824 -4.242518537 2.126035822 0.996637881 0.428903013 0.887821586 0.045637712 0.166053806 0.792053018 0.006608726 0.182441267 5.72E-05 4.242518537 -0.567734868 TLTTGSSAYLWKPPS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 TLTTGSSAYLWKPPSR 16 1 Q9BQS8;Q9BQS8-4;Q9BQS8-3;Q9BQS8-2 Q9BQS8 FYCO1 FYVE and coiled-coil domain-containing protein 1 1 0 TLTTGSSAYLWKPPS(1)R;TLTTGSSAYLWKPPS(1)R ; 201.4 7.12E-16 26455000 1414.8 1330.13 1383.69 1323.62 1683.11 1541.49 1278.42 1580.18 1899.66 1718.95 TRUE FALSE FALSE 1248.959289 1371.109729 1458.496467 1377.602945 1558.950329 1512.088647 1327.729088 1760.061304 1821.355211 1708.725609 0.730930281 0.802416562 0.853558031 0.806216596 0.912346792 0.884921861 0.777028846 1.030043264 1.065914387 1 10.73870503 -4.242331022 23.60142525 0.858761185 1.030043592 0.185540219 0.097673075 2557.070637 3158223.987 0.014251409 0.626406395 5.72E-05 4.242331022 0.171282407 S(ph)QEQEVLER ddPTM_HeLa_CUDC101_4h_R1 2 SQEQEVLER 9 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 S(1)QEQEVLER;S(1)QEQEVLER ; 143.76 0.0013739 37405000 1829.48 1325.62 1401.25 1570.95 1539.85 1757.91 2259.7 3582.2 1717.6 1659.44 TRUE FALSE FALSE 1615.031128 1366.460781 1477.005814 1635.020131 1426.258333 1724.380796 2346.857386 3989.983168 1646.799801 1649.569577 0.979062145 0.828374141 0.895388612 0.991179853 0.864624538 1.045351963 1.422708941 2.418802592 0.99832091 1 10.68787392 -4.242272263 1.768382781 0.962072389 2.959577149 0.981220316 0.061964132 0.09475715 0.279905307 0.009830775 0.321083499 5.72E-05 4.242272263 1.99750476 up SSGPPGMSSQK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 SSGPPGMSSQKR 12 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 0 1 SSGPPGMSSQK(1)R 149.33 0.0001395 730270 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 QAPLPS(ph)PESLDLGR ddPTM_HeLa_CUDC101_4h_R1 2 QAPLPSPESLDLGR 14 0 H3BRS1;Q12968 H3BRS1 NFATC3 "Nuclear factor of activated T-cells, cytoplasmic 3" 1 0 QAPLPS(0.769)PES(0.231)LDLGR;QAPLPS(0.961)PES(0.039)LDLGR ; 90.498 0.014258 6942000 2628.58 2442.1 1918.54 2133.65 2513.4 2564.7 2477.2 3106.3 2796.4 2765.2 TRUE FALSE FALSE 2320.461837 2517.338206 2022.262076 2220.669469 2327.991489 2515.782621 2572.746434 3459.908636 2681.131208 2748.752467 0.844187268 0.915811168 0.735701777 0.807882665 0.846926567 0.915245243 0.935968758 1.258719611 0.975399291 1 11.42456128 -4.242195068 3.122997015 0.896151895 1.322937486 0.689444853 0.075178444 0.213533209 3.032805838 0.012560773 0.227798908 5.73E-05 4.242195068 0.426785591 SSGPTSLFAVTVAPPGAR ddPTM_HeLa_CUDC101_4h_R1 2 SSGPTSLFAVTVAPPGAR 18 0 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;A0A1X7SBS1;A0A1W2PP22 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 0 ; ; 250.8 1.16E-50 3825800 332 180.89 199.045 0 152.33 164.899 49.713 196.489 189.32 289.35 FALSE FALSE TRUE 293.0834633 186.4630065 209.8059748 0 141.0929194 161.7538263 51.63044706 218.8565135 181.5161495 287.6289333 1.018963774 0.648276251 0.729432788 0 0.490537992 0.562369802 0.179503663 0.760898811 0.631077504 1 8.168064997 -6.918916627 1.694144246 1.010886655 0.409169477 0.363605613 0.243493305 0.156261609 0.897990024 0.034404021 0.046787444 1.21E-07 6.918916627 -0.601717178 SSGPYGGGGQYFAK(ac)PR ddPTM_HeLa_CUDC101_4h_R1 2 SSGPYGGGGQYFAKPR 16 1 F8W6I7;P09651-3;P09651-2;P09651;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 1 ; SSGPYGGGGQYFAK(1)PR;SSGPYGGGGQYFAK(1)PR 151.66 0.0018491 58111000 1658.88 1089.59 1181.5 1203.56 1686.69 1509.62 1488.84 1444.78 984.01 389.761 FALSE TRUE FALSE 1464.428601 1123.158976 1245.375464 1252.646379 1562.266239 1480.826514 1546.265058 1609.247915 943.4486913 387.4426842 3.77972965 2.898903559 3.214347604 3.233114032 4.032251227 3.822053103 3.990951747 4.153512198 2.435066475 1 8.597839093 -9.566770922 0.435251612 3.77E-15 3.799722006 0.627647067 0.560468051 0.650983087 0.136186081 1.148766902 0.117757643 2.71E-10 9.566770922 3.799722006 SSGPYGGGGQYFAKPR ddPTM_HeLa_CUDC101_4h_R1 1 SSGPYGGGGQYFAKPR 16 1 F8W6I7;P09651-3;P09651-2;P09651;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 0 142.95 0.00035868 13990000 987.11 922.25 1168.7 1143.1 984.33 1305.7 880.34 974.54 1147.9 928.14 FALSE FALSE TRUE 871.4024622 950.6634294 1231.883457 1189.720559 911.717937 1280.795948 914.2950087 1085.477694 1100.583076 922.619382 0.944487488 1.030396118 1.335202231 1.289503106 0.988184244 1.38821704 0.990977457 1.176517333 1.192889611 1 9.84959179 -6.948278053 8.738496211 0.974478478 1.189089184 0.169238581 0.141463554 0.207736375 32.38762932 0.018691218 0.024570526 1.13E-07 6.948278053 0.214610706 T(ph)GT(ph)PRT(ph)T(ph)AVSSNR ddPTM_HeLa_CUDC101_4h_R1 1 TGTPRTTAVSSNR 13 1 Q8N7P7 Q8N7P7 Uncharacterized protein FLJ40521 4 0 T(1)GT(0.999)PRT(0.996)T(0.989)AVS(0.012)S(0.004)NR 45.79 0.003364 0 728.22 543.13 597.78 531.25 693.14 773.94 558.31 765.93 778.5 759.37 TRUE FALSE FALSE 642.8591555 559.8631915 630.097795 552.9166713 642.0084431 759.178384 579.8442037 853.1203752 746.4099005 754.8532335 0.851634632 0.741684829 0.834728881 0.732482351 0.850507641 1.00572979 0.768154892 1.130180461 0.988814603 1 9.560052357 -4.241654428 23.90154201 0.888240369 1.130180873 0.363996751 0.101092034 2520.890397 3045318.962 0.015301613 0.748072173 5.73E-05 4.241654428 0.241940504 S(ph)SPNVANQPPS(ph)PGGK ddPTM_HeLa_CUDC101_4h_R1 1 SSPNVANQPPSPGGK 15 0 A8MQ02;J3KN01;P55196-3;P55196;P55196-5;Q5TIG5;P55196-2;P55196-6;P55196-1 A8MQ02 MLLT4 Afadin 2 0 S(0.966)S(0.034)PNVANQPPS(1)PGGK 162.76 1.31E-10 0 2906.7 2649.3 2590.3 2414.8 2761.5 2643.8 2378 1520.8 2966.5 2624.9 TRUE FALSE FALSE 2565.981032 2730.921793 2730.339453 2513.285982 2557.789647 2593.37392 2469.720257 1693.921725 2844.219614 2609.286978 0.98340315 1.046616112 1.046392933 0.963207958 0.98026383 0.993901377 0.946511548 0.649189506 1.090037101 1 11.34943991 -4.241365606 2.8238043 0.996833945 0.57615164 0.883744828 0.039082689 0.078149779 0.819410518 0.00376921 0.077052124 5.74E-05 4.241365606 -0.420682306 NYPS(ph)QEELIK ddPTM_HeLa_CUDC101_4h_R1 2 NYPSQEELIK 10 0 P38398-8;P38398-4;P38398;P38398-7;K7EPC7;H0Y8B8;B7ZA85;E7EUM2;A0A2R8Y7V5;P38398-6;P38398-5;P38398-3 P38398-8 BRCA1 Breast cancer type 1 susceptibility protein 1 0 NYPS(1)QEELIK;NYPS(1)QEELIK ; 143.25 0.00094154 114112000 5860.3 5470.9 5033.1 5010.4 6073.7 6049.8 6566.7 11846.5 6128.9 6671.5 TRUE FALSE FALSE 5173.364518 5639.451944 5305.20461 5214.745769 5625.655252 5934.410145 6819.979819 13195.05767 5876.264148 6631.817621 0.780082447 0.850362942 0.79996238 0.786322252 0.848282563 0.894839165 1.028372644 1.98965931 0.886071434 1 12.69518862 -4.241193867 2.862542883 0.873116875 2.219506906 0.966296636 0.063113243 0.081928132 0.893762814 0.012943197 0.260877189 5.74E-05 4.241193867 1.346390032 VCDTAFTWNS(ph)QLAR ddPTM_HeLa_CUDC101_4h_R1 1 VCDTAFTWNSQLAR 14 0 A0A3B3IT03;Q6ZNG1 A0A3B3IT03 ZNF600 Zinc finger protein 600 1 0 VCDT(0.01)AFT(0.112)WNS(0.878)QLAR 80.905 0.024298 15615000 3026.9 2674.6 2123.6 2298.3 2511.9 2713.2 2731.7 3375.9 2224.1 2740.4 TRUE FALSE FALSE 2672.09137 2757.001256 2238.40824 2392.034608 2326.602141 2661.45023 2837.062584 3760.19881 2132.421657 2724.099979 0.980907966 1.012077852 0.821705612 0.878100887 0.854081039 0.977001671 1.041467863 1.380345376 0.782798603 1 11.41156394 -4.241191482 2.464678065 0.961803632 1.487116095 0.706631794 0.086520388 0.222622193 1.582721929 0.010516791 0.250630878 5.74E-05 4.241191482 0.525312462 RYS(ph)DHAGPAIPSVVAYPK ddPTM_HeLa_CUDC101_4h_R1 1 RYSDHAGPAIPSVVAYPK 18 1 J3KNR0;P27448-8;P27448-6;P27448-3;P27448-4;P27448-2;P27448;P27448-7;H0YIY6 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 0 RY(0.007)S(0.993)DHAGPAIPSVVAYPK 56.404 0.02756 14831000 2045.2 1871.3 2025.3 2177.3 2332.8 2003.7 1745.2 1139.8 1900.2 2242.9 TRUE FALSE FALSE 1805.464756 1928.952535 2134.793844 2266.099705 2160.713992 1965.482761 1812.512949 1269.550225 1821.872952 2229.559131 0.809785545 0.86517218 0.957495953 1.016389148 0.969121636 0.881556687 0.812946794 0.569417607 0.817144935 1 11.12254275 -4.240610727 1.758088886 0.919625475 0.439003546 0.70534248 0.0677968 0.48266794 1.400444782 0.011861628 0.392321088 5.75E-05 4.240610727 -0.480621929 TDS(ph)PDMHEDT ddPTM_HeLa_CUDC101_4h_R1 1 TDSPDMHEDT 10 0 Q9BW61 Q9BW61 DDA1 DET1- and DDB1-associated protein 1 1 0 T(0.054)DS(0.934)PDMHEDT(0.011) 86.189 0.034238 54919000 5826.8 5418.5 5740.7 5454.7 6020.8 5206.1 4927.9 5516.9 5530.4 5729.6 TRUE FALSE FALSE 5143.791337 5585.437562 6051.059607 5677.166243 5576.657579 5106.802316 5117.970754 6144.921596 5302.434571 5695.520084 0.903129347 0.980672086 1.062424417 0.996777495 0.979130527 0.896634941 0.898595857 1.078904385 0.930983386 1 12.47561187 -4.240441613 23.81477745 0.960244563 1.078904612 0.324270097 0.051083216 2911.573308 3302085.98 0.008026145 0.446799585 5.75E-05 4.240441613 0.118660049 GSS(ph)YSSIPK ddPTM_HeLa_CUDC101_4h_R1 3 GSSYSSIPK 9 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 GS(0.012)S(0.984)YS(0.002)S(0.002)IPK;GS(0.003)S(0.983)YS(0.008)S(0.006)IPK;GS(0.029)S(0.957)YS(0.013)SIPK ;; 109.42 0.010512 70493000 17805 14995.8 14782.9 15771.8 17013.5 16825 19080.5 23055.5 16420.2 15588.1 TRUE FALSE FALSE 15717.92489 15457.80282 15582.10829 16415.04218 15758.448 16504.09116 19816.44128 25680.04493 15743.35241 15495.38129 1.014361931 0.99757486 1.005596958 1.059350646 1.016977105 1.065097454 1.278861159 1.657270928 1.016002905 1 13.91955063 -4.240313328 1.395788388 1.009233255 1.957192767 0.992480486 0.017231315 0.073678841 0.12060823 0.002556732 0.099084716 5.75E-05 4.240313328 0.947959512 S(ph)PILEEKDIPPLEFPK ddPTM_HeLa_CUDC101_4h_R1 2 SPILEEKDIPPLEFPK 16 1 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;A0A0A0MR81 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 S(1)PILEEKDIPPLEFPK;S(1)PILEEKDIPPLEFPK ; 86.179 0.006362 148761000 5676.5 6012.6 5816.9 5504.3 7523.5 7137.3 6818.1 7424.9 5465.7 4614.2 TRUE FALSE FALSE 5011.109275 6197.841079 6131.379209 5728.789146 6968.506394 7001.167894 7081.076401 8270.120604 5240.401533 4586.754533 1.09251743 1.351247605 1.33675765 1.248985335 1.519267348 1.526388178 1.543809757 1.803044079 1.142507517 1 12.16325799 -4.239798602 0.23122508 0.940164287 2.429682809 0.854383541 0.089034932 2.230191367 0.098788788 0.06645515 0.964255468 5.76E-05 4.239798602 1.489518521 SPPLS(ph)PVGTTPVK ddPTM_HeLa_CUDC101_4h_R1 2 SPPLSPVGTTPVK 13 0 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 1 0 S(0.247)PPLS(0.733)PVGT(0.02)TPVK;S(0.001)PPLS(0.997)PVGT(0.002)TPVK ; 132.51 0.0010131 46405000 8282.6 9233.8 8813.4 7884 8551.2 8362.2 8841.7 10179.9 6936.4 8181.1 TRUE FALSE FALSE 7311.726184 9518.282433 9289.879063 8205.543598 7920.395012 8202.704967 9182.727331 11338.73867 6650.478656 8132.438453 0.89908165 1.170409403 1.142323931 1.008989326 0.973926216 1.008640276 1.129148088 1.394260618 0.817771778 1 12.98947228 -4.239509661 1.645506308 0.987685073 1.558364644 0.597471283 0.097464114 0.527416322 1.292769595 0.013864626 0.484891336 5.76E-05 4.239509661 0.570679571 DIEISTEEEKDTGDLKDS(ph)SLLK ddPTM_HeLa_CUDC101_4h_R1 1 DIEISTEEEKDTGDLKDSSLLK 22 2 Q4G0J3;Q4G0J3-3 Q4G0J3 LARP7 La-related protein 7 1 0 DIEIS(0.002)T(0.002)EEEKDT(0.005)GDLKDS(0.496)S(0.496)LLK 44.468 0.031981 30468000 1696.3 1809.6 1377.2 1593.2 2263.4 2049 1873.8 1354.1 2331.6 2037.1 TRUE FALSE FALSE 1497.462285 1865.351631 1451.655598 1658.177582 2096.433491 2009.918739 1946.073094 1508.245271 2235.490461 2024.983239 0.739493669 0.921168924 0.716872896 0.818859905 1.035284367 0.992560679 0.961031705 0.744818644 1.103955044 1 10.98369425 -4.238802138 22.95458577 0.885549465 0.744818244 0.096338379 0.124847812 3713.140519 3765012.909 0.017444261 1.057053463 5.77E-05 4.238802138 -0.140731222 ENQPENSQT(ph)PTKK ddPTM_HeLa_CUDC101_4h_R1 2 ENQPENSQTPTKK 13 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 0 ENQPENSQT(0.922)PT(0.078)KK;ENQPENS(0.007)QT(0.67)PT(0.323)KK ; 254.72 5.94E-56 116741300 7887.6 4490.75 8284.2 8159.9 6319.7 4771 5397.3 2168.49 8510 9114 TRUE FALSE FALSE 6963.027485 4629.104685 8732.06891 8492.695992 5853.508322 4680.001124 5605.475669 2415.342136 8159.214198 9059.789523 0.768563935 0.510950577 0.963826907 0.937405441 0.646097606 0.516568416 0.618720298 0.266600248 0.900596441 1 13.14526182 -4.238527171 0.262690703 0.949707619 4.63E-37 0.555060717 0.152978276 5.910805833 0.314664996 0.101687684 1.827736475 5.77E-05 4.238527171 -0.949707619 DVEDMELS(ph)DVEDDGSKIIVEDR ddPTM_HeLa_CUDC101_4h_R1 2 DVEDMELSDVEDDGSKIIVEDR 22 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 DVEDMELS(1)DVEDDGSKIIVEDR;DVEDMELS(1)DVEDDGSKIIVEDR ; 131.27 1.49E-07 10382600 2209.77 1871.14 1773.86 1674.12 2282.78 2103.05 1854.57 1831.65 1903.64 2021.08 TRUE FALSE FALSE 1950.74411 1928.787606 1869.760237 1742.39785 2114.383867 2062.937825 1926.101386 2040.157632 1825.171153 2009.058526 0.970974257 0.960045504 0.930664892 0.867270827 1.052425223 1.026818183 0.95870845 1.015479443 0.908470873 1 10.97230388 -4.238108131 21.96682022 0.97837601 1.015479657 0.017651042 0.053462674 3181.916564 2995586.293 0.006814423 0.394483095 5.78E-05 4.238108131 0.037103647 SELGNQS(ph)PSTSSR ddPTM_HeLa_CUDC101_4h_R1 2 SELGNQSPSTSSR 13 0 A0A0A0MSK5;J3KN66;Q5JTV8;Q5JTV8-3;H0YD16 A0A0A0MSK5 TOR1AIP1 Torsin-1A-interacting protein 1 1 0 SELGNQS(1)PSTSSR;SELGNQS(1)PSTSSR ; 187.08 4.31E-11 52712000 7189.2 5906 4715.5 5465.7 5362.1 5595.9 4524.1 2614.6 5829.4 6168.1 TRUE FALSE FALSE 6346.492874 6087.95686 4970.434194 5688.614871 4966.548566 5489.167531 4698.596052 2912.235495 5589.109665 6131.411867 1.035078545 0.992912724 0.810650842 0.927782213 0.810017117 0.895253434 0.766315517 0.474969804 0.911553454 1 12.5820036 -3.734559692 0.439908162 1.013794982 8.60E-18 0.737895152 0.079033326 2.306202476 0.215773085 0.017127322 1.346897036 0.000184264 3.734559692 -1.013794982 down SSHYDELLAAEAR ddPTM_HeLa_CUDC101_4h_R1 2 SSHYDELLAAEAR 13 0 Q7KZF4;H7C597 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 0 ; ; 199.4 1.21E-16 22134000 10445.9 7256.2 5785.9 5522.5 9680 7793.8 7385.2 7943.4 7741.8 7102.9 FALSE FALSE TRUE 9221.447437 7479.754921 6098.703255 5747.73142 8965.925685 7645.14625 7670.049638 8847.644548 7422.679727 7060.651635 1.306033482 1.059357593 0.863759263 0.814051127 1.269843939 1.082781965 1.086309031 1.253091783 1.051274034 1 12.78558562 -9.907679442 2.109385003 0.998853571 1.12821016 0 0.157044204 0.804717181 6.493200071 0.138193569 0.026721083 1.24E-10 9.907679442 0.129356589 ETVSEAPPLLFS(ph)DEEEKEAQLGVK ddPTM_HeLa_CUDC101_4h_R1 4 ETVSEAPPLLFSDEEEKEAQLGVK 24 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 0 ETVSEAPPLLFS(1)DEEEKEAQLGVK;ETVSEAPPLLFS(1)DEEEKEAQLGVK;ETVSEAPPLLFS(1)DEEEKEAQLGVK;ETVSEAPPLLFS(1)DEEEKEAQLGVK ;;; 118.84 1.16E-08 107600000 11810.3 10130.2 10140.6 9145.3 9782.9 8873.8 7658.7 5325.1 11000 12892.9 TRUE FALSE FALSE 10425.91454 10442.29945 10688.83151 9518.284863 9061.234957 8704.54705 7954.098624 5931.287859 10546.57534 12816.21246 0.813494203 0.814772655 0.834008608 0.742675334 0.707013479 0.679182487 0.620627869 0.462795688 0.822908904 1 13.64568235 -3.730828643 0.16784055 1.040615749 4.16E-16 0.810211917 0.059929477 4.686899551 0.114278164 0.089376058 1.074678189 0.000185854 3.730828643 -1.040615749 down VS(ph)PGQAAPAMAR ddPTM_HeLa_CUDC101_4h_R1 2 VSPGQAAPAMAR 12 0 Q96HA7-2;Q96HA7 Q96HA7-2 TONSL Tonsoku-like protein 1 0 VS(1)PGQAAPAMAR;VS(1)PGQAAPAMAR ; 140.33 0.0012386 74165000 1293.86 1139.21 1057.35 1078.4 1079.19 1435.98 1197.1 949.62 1297.87 1222.61 TRUE FALSE FALSE 1142.195692 1174.30771 1114.513539 1122.381813 999.5803037 1408.591074 1243.272548 1057.720902 1244.371249 1215.337861 0.939817419 0.966239716 0.917040088 0.923514233 0.82247113 1.159011925 1.02298512 0.870310171 1.02388915 1 10.24714172 -4.23803751 22.80871727 0.968979619 0.870309802 0.119770666 0.083721974 3301.79016 3217933.997 0.011095469 0.713684467 5.78E-05 4.23803751 -0.098669817 YESQEPLAGQES(ph)PLPLATR ddPTM_HeLa_CUDC101_4h_R1 4 YESQEPLAGQESPLPLATR 19 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(0.835)PLPLAT(0.165)R;YESQEPLAGQES(1)PLPLATR ;;; 215.88 9.20E-25 528677000 18633 16454.4 15297.3 15025.2 16677.2 15123.8 14648.2 14791 17369 14926.2 TRUE FALSE FALSE 16448.86799 16961.34056 16124.31831 15637.9926 15446.95618 14835.33871 15213.18598 16474.74765 16653.04247 14837.4183 1.108607148 1.143146349 1.086733419 1.053956442 1.041081128 0.999859842 1.025325678 1.110351364 1.12236793 1 13.85695247 -4.237519536 22.45099834 1.055500243 1.110351612 0.047038068 0.048214016 3466.9462 3253844.761 0.007576852 0.500897087 5.79E-05 4.237519536 0.054851369 TVT(ph)PAS(ph)SAKT(ph)SPAK ddPTM_HeLa_CUDC101_4h_R1 1 TVTPASSAKTSPAK 14 1 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 3 0 T(0.132)VT(0.868)PAS(0.598)S(0.406)AKT(0.98)S(0.016)PAK 121.92 0.0032304 22987000 5559.6 3923.2 4552.4 4322.3 4669.9 4934 5470.8 7274.5 4612.3 4537.7 TRUE FALSE FALSE 4907.912116 4044.069142 4798.516514 4498.582077 4325.410781 4839.892171 5681.810589 8102.599675 4422.179042 4510.709559 1.088057666 0.896548334 1.063805251 0.997311403 0.95892026 1.072978011 1.259626787 1.796302681 0.980373262 1 12.13913868 -4.23737179 1.794235334 1.024548941 2.084490582 0.949726244 0.055257582 0.150546575 0.457200925 0.008310511 0.274615515 5.79E-05 4.23737179 1.059941641 IMPDS(ph)NDSPPAEREPGEVVDSLVGK ddPTM_HeLa_CUDC101_4h_R1 4 IMPDSNDSPPAEREPGEVVDSLVGK 25 1 Q9Y657 Q9Y657 SPIN1 Spindlin-1 1 0 IMPDS(0.566)NDS(0.418)PPAEREPGEVVDS(0.016)LVGK;IMPDS(0.582)NDS(0.416)PPAEREPGEVVDS(0.002)LVGK;IMPDS(0.541)NDS(0.457)PPAEREPGEVVDS(0.002)LVGK;IMPDS(0.507)NDS(0.375)PPAEREPGEVVDS(0.118)LVGK ;;; 60.278 0.0030587 130356000 10640.1 9958.13 9452.71 9664.52 10118.89 10252.94 10337.3 11945.1 10145.49 10478.68 TRUE FALSE FALSE 9392.883607 10264.92818 9963.752095 10058.6809 9372.439644 10057.38225 10736.01312 13304.8819 9727.288608 10416.35235 0.901744036 0.985462842 0.956549065 0.965662505 0.899781357 0.965537831 1.030688361 1.277307205 0.933847885 1 13.34656253 -4.237338379 2.127507782 0.952663404 1.378826942 0.911298365 0.030617741 0.191719093 0.906420831 0.005597258 0.158914622 5.79E-05 4.237338379 0.426163538 AS(ph)PEMSDR ddPTM_HeLa_CUDC101_4h_R1 1 ASPEMSDR 8 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 AS(1)PEMSDR 93.667 0.024642 5445900 1997.1 1726.4 1966.8 2143.1 2041.6 2043.9 2142.5 1341.1 2081.7 2063.4 TRUE FALSE FALSE 1763.002965 1779.588338 2073.131157 2230.504881 1890.995235 2004.916013 2225.136943 1493.765403 1995.891445 2051.126805 0.859528997 0.867614978 1.010727934 1.087453431 0.921929951 0.977470534 1.084836363 0.728265751 0.973070724 1 11.00220097 -4.23733505 24.18983972 0.953113637 0.72826534 0.461483657 0.076777519 3863.626814 3877242.534 0.01198796 0.954620099 5.79E-05 4.23733505 -0.224848297 SFS(ph)SSAEEHS ddPTM_HeLa_CUDC101_4h_R1 2 SFSSSAEEHS 10 0 Q96EQ0 Q96EQ0 SGTB Small glutamine-rich tetratricopeptide repeat-containing protein beta 1 0 S(0.3)FS(0.64)S(0.008)S(0.052)AEEHS;S(0.017)FS(0.801)S(0.091)S(0.091)AEEHS ; 125.97 0.0033766 65831000 6071.8 4710.8 5016 4883.1 7927.4 7625.2 8007.3 9521.1 5566.8 4958.6 TRUE FALSE FALSE 5360.072808 4855.934164 5287.180133 5082.253925 7342.611496 7479.762014 8316.144243 10604.94354 5337.334148 4929.106027 1.087433052 0.985155145 1.072644837 1.031070116 1.489643651 1.517468274 1.687150611 2.151494304 1.082819911 1 12.2671103 -4.237234929 0.585114594 1.024189075 2.885559566 0.939967593 0.090442715 0.564448603 0.127788016 0.016636606 0.71294796 5.79E-05 4.237234929 1.861370491 up GT(ph)PDTDLEVQR ddPTM_HeLa_CUDC101_4h_R1 2 GTPDTDLEVQR 11 0 P0C7T5 P0C7T5 ATXN1L Ataxin-1-like 1 0 GT(0.994)PDT(0.006)DLEVQR;GT(0.994)PDT(0.006)DLEVQR ; 154.67 0.0013772 29736000 2889.2 2350.8 2678.7 1909.32 2309.6 2417.4 1626.26 1410.16 2339.8 2379 TRUE FALSE FALSE 2550.532356 2423.225362 2823.518625 1987.190322 2139.225409 2371.292123 1688.985393 1570.686914 2243.352454 2364.849602 1.078517785 1.024684766 1.193952724 0.840303045 0.904592583 1.002724283 0.714204147 0.664180467 0.948623731 1 11.20753272 -4.237185905 0.658082127 1.041664336 0.368171407 0.624201415 0.094300789 1.347328227 0.391354373 0.015403334 0.684039695 5.79E-05 4.237185905 -0.67349293 DLTGQVPT(ph)PVVK ddPTM_HeLa_CUDC101_4h_R1 1 DLTGQVPTPVVK 12 0 P46821;D6RA40;D6RA32 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DLTGQVPT(1)PVVK 121.99 0.014672 7470700 3097.2 2710.3 2395.6 2053.3 2828.5 3649.8 3159.6 1895.5 2446 3041.5 TRUE FALSE FALSE 2734.150911 2793.801131 2525.113382 2137.042449 2619.84719 3580.186146 3281.46683 2111.276058 2345.174845 3023.409023 0.904327165 0.924056623 0.835187486 0.706832067 0.866520927 1.184155408 1.085353257 0.69830977 0.775672371 1 11.56196045 -4.236942379 23.46277021 0.943349309 0.698309087 0.176073777 0.135983267 3613.785426 3461092.804 0.018359494 1.41255337 5.80E-05 4.236942379 -0.245040222 NFDFEGSLS(ph)PVIAPK ddPTM_HeLa_CUDC101_4h_R1 2 NFDFEGSLSPVIAPK 15 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 NFDFEGS(0.105)LS(0.895)PVIAPK;NFDFEGS(0.121)LS(0.879)PVIAPK ; 149.31 0.00023717 173924200 9572.3 7922.4 7768.4 7125.8 9160.8 8458.5 8228.6 8403.1 8326.6 8427.1 TRUE FALSE FALSE 8450.249505 8166.479754 8188.383202 7416.420924 8485.026035 8297.168205 8545.979858 9359.674938 7983.374024 8376.975234 1.008747104 0.974872138 0.977486858 0.885333992 1.012898546 0.990473049 1.020174898 1.117309611 0.953013922 1 13.03221369 -4.236898174 2.225691931 0.991540799 1.154856145 0.540462724 0.037523724 0.437511356 2.331482465 0.005269515 0.143461774 5.80E-05 4.236898174 0.163315346 SLGNILQAKPTS(ph)SPAKGPPQK ddPTM_HeLa_CUDC101_4h_R1 2 SLGNILQAKPTSSPAKGPPQK 21 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 SLGNILQAKPT(0.11)S(0.445)S(0.445)PAKGPPQK;SLGNILQAKPT(0.241)S(0.38)S(0.38)PAKGPPQK ; 99.13 0.00022026 856600000 8343.8 8080.1 7688.6 7412.1 8861 7933 8453.1 9367.4 8400.9 8050.4 TRUE FALSE FALSE 7365.752412 8329.038304 8104.268973 7714.397476 8207.341684 7781.691242 8779.138899 10433.74695 8054.611346 8002.515863 0.920429592 1.040802473 1.01271514 0.963996524 1.025595178 0.9724056 1.09704736 1.303808344 1.006509888 1 12.96623792 -4.23686672 1.601992378 0.974594862 1.442829552 0.865316344 0.036853941 0.298175518 0.680461945 0.006121944 0.220814204 5.80E-05 4.23686672 0.468234691 RGSSAAASPGS(ph)PPPGR ddPTM_HeLa_CUDC101_4h_R1 5 RGSSAAASPGSPPPGR 16 1 Q86UX6 Q86UX6 STK32C Serine/threonine-protein kinase 32C 1 0 RGSSAAAS(0.002)PGS(0.998)PPPGR;RGSSAAAS(0.014)PGS(0.986)PPPGR;RGSSAAAS(0.061)PGS(0.939)PPPGR;RGSSAAASPGS(1)PPPGR;RGSSAAASPGS(1)PPPGR ;;;; 105.92 0.0012272 58495320 3808.42 3415.95 3405.4 2989.09 3759.48 3139.63 3342.97 2765.456 4009.37 3263.04 TRUE FALSE FALSE 3362.002781 3521.191371 3589.506225 3110.99801 3482.15065 3079.746789 3471.909473 3080.264333 3844.102072 3243.631293 1.036493509 1.085570786 1.106632012 0.95910963 1.07353467 0.94947499 1.070377352 0.949634547 1.185123007 1 11.66339412 -4.236813593 23.32811859 1.026088391 0.949634316 0.063579434 0.071186193 4092.63394 3876820.568 0.006582229 0.534313954 5.80E-05 4.236813593 -0.076454076 LADSGDGAGPS(ph)PEEKDFLK ddPTM_HeLa_CUDC101_4h_R1 2 LADSGDGAGPSPEEKDFLK 19 1 Q92917 Q92917 GPKOW G patch domain and KOW motifs-containing protein 1 0 LADS(0.023)GDGAGPS(0.977)PEEKDFLK;LADSGDGAGPS(1)PEEKDFLK ; 84.025 0.0028905 206980000 8693.2 7711.5 7563 7853.4 8518.3 8133.4 7828.1 8446.6 8174.1 8161.3 TRUE FALSE FALSE 7674.196274 7949.082175 7971.878657 8173.695597 7889.92198 7978.268946 8130.032439 9408.126802 7837.160138 8112.756225 0.945941929 0.979825099 0.982635055 1.00751155 0.972532856 0.983422739 1.002129512 1.159670837 0.96602929 1 12.98597642 -4.236357825 2.830370375 0.977707182 1.199090086 0.91611317 0.016221946 0.123954973 1.293349286 0.003059895 0.064752382 5.80E-05 4.236357825 0.221382905 SQRYS(ph)GAYGASVSDEELK ddPTM_HeLa_CUDC101_4h_R1 2 SQRYSGAYGASVSDEELK 18 1 C9JRZ6;F8WAR4;Q9NX63;A0A286YEX5 C9JRZ6 CHCHD3 MICOS complex subunit MIC19 1 0 S(0.131)QRY(0.221)S(0.648)GAYGASVSDEELK;S(0.346)QRY(0.002)S(0.652)GAYGASVSDEELK ; 116.69 5.25E-05 33328000 4435.3 4269.5 3218.7 3719.1 4286.7 3920 3894.7 5048.1 3365.1 3620.4 TRUE FALSE FALSE 3915.400857 4401.038234 3392.712658 3870.780973 3970.478681 3845.232531 4044.919884 5622.755299 3226.389154 3598.8657 1.087954146 1.222895935 0.942717217 1.075555827 1.103258363 1.068456801 1.123942992 1.562368748 0.896501682 1 11.81332655 -4.236320956 2.843374472 1.056695292 1.671232666 0.761153083 0.085583093 0.143804647 1.520609915 0.009930674 0.20916256 5.80E-05 4.236320956 0.614537374 ALPFSEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 ALPFSEKK 8 1 A0A1C7CYX1;Q6PJG2 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 0 1 ; ALPFSEK(1)K;ALPFSEK(1)K 95.741 0.01982 8131800 1772.2 2226 2482.1 3227.9 3881.5 6493.4 11928 17251 735.64 1195.68 FALSE TRUE FALSE 1564.465402 2294.580422 2616.289834 3359.547714 3595.169478 6369.549214 12388.06696 19214.78411 705.3166078 1188.568042 1.316260699 1.930541913 2.201211661 2.826550601 3.024790631 5.359011001 10.42268218 16.16633077 0.593417106 1 10.21500878 -3.710979368 0.657244685 1.210357706 40.00211795 0.991039015 0.45044582 0.319771242 0.057763819 0.074093431 10.98175576 0.000194545 3.710979368 38.79176024 up SSLLIEQPVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 SSLLIEQPVKK 11 1 E7EX82;Q8NDX5-2;Q8NDX5;Q8NDX5-7 E7EX82 PHC3 Polyhomeotic-like protein 3 0 1 SSLLIEQPVK(1)K 123.8 0.00046265 0 177.67 242.77 115.63 0 146.93 255.09 133.1 77.86 172.29 0 FALSE TRUE FALSE 156.8437919 250.2494559 121.8813076 0 136.0912666 250.2245833 138.2337116 86.72326768 165.1881333 0 0 S(ph)PPETAAPVEDMAR ddPTM_HeLa_CUDC101_4h_R1 1 SPPETAAPVEDMAR 14 0 A0A3B3IU28;A0A2R8Y5V0;Q6ZT62-2;Q6ZT62;Q9Y3L3 A0A3B3IU28 SH3BP1 SH3 domain-binding protein 1 1 0 S(1)PPETAAPVEDMAR 107.99 0.0040608 3948400 1449.4 1139.6 1604 1265.6 1543.8 1472.2 2515.5 7292.5 1973.5 1531.2 TRUE FALSE FALSE 1279.503529 1174.709725 1690.717092 1317.216638 1429.91695 1444.120238 2612.523678 8122.648723 1892.151495 1522.092354 0.840621481 0.771772962 1.110784827 0.86539863 0.939441648 0.948773071 1.716402865 5.336501888 1.243125287 1 10.57184018 -4.236316846 2.512058046 0.923640646 6.470163568 0.9891225 0.136836722 0.029000747 0.215098928 0.01456254 0.350836253 5.80E-05 4.236316846 5.546522922 up ALHSFIT(ph)PPTTPQLR ddPTM_HeLa_CUDC101_4h_R1 2 ALHSFITPPTTPQLR 15 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;J3QR75 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 ALHS(0.03)FIT(0.97)PPTTPQLR;ALHSFIT(0.999)PPTTPQLR ; 96.153 0.010577 137699000 2499.2 2541.5 2478.9 2379.99 2643.9 2451.7 2767.1 1610.4 2689.4 2599.9 TRUE FALSE FALSE 2206.247565 2619.800603 2612.916832 2477.056279 2448.864764 2404.937907 2873.827974 1793.721427 2578.541794 2584.435679 0.853667043 1.013683809 1.01102026 0.95845151 0.94754332 0.930546628 1.111975042 0.694047618 0.997719469 1 11.33563358 -4.235639863 24.26465963 0.952448564 0.69404712 0.585655782 0.068729382 3735.631027 3513313.523 0.010563564 1.047704651 5.81E-05 4.235639863 -0.258401444 ACTGLSGPGSGS(ph)KSPPATR ddPTM_HeLa_CUDC101_4h_R1 1 ACTGLSGPGSGSKSPPATR 19 1 I3L2J0;I3L2I4 I3L2J0 CIC 1 0 ACTGLSGPGS(0.037)GS(0.36)KS(0.302)PPAT(0.302)R 63.536 0.014448 15444000 2876.5 2857.7 2660.9 2543.1 3232.5 3238.2 2599.2 2838 2756.2 3192.7 TRUE FALSE FALSE 2539.32103 2945.74235 2804.756303 2646.81861 2994.044915 3176.43673 2699.452015 3161.066448 2642.588269 3173.709678 0.800111317 0.928170075 0.883746967 0.833982588 0.943389666 1.000859263 0.850566778 0.996016261 0.832649655 1 11.63195445 -4.234852129 22.75941795 0.905238307 0.996016674 0.154450703 0.067047422 4628.548381 3961951.5 0.011195499 0.979396679 5.82E-05 4.234852129 0.090778367 ESTSTESS(ph)SQDVESTFSSPEDSLPK ddPTM_HeLa_CUDC101_4h_R1 1 ESTSTESSSQDVESTFSSPEDSLPK 25 0 G3V1N5;B4E3L3;Q96RU2-3;Q96RU2-2;Q96RU2 G3V1N5 USP28 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 28 1 0 ES(0.004)T(0.004)S(0.004)T(0.011)ES(0.131)S(0.452)S(0.394)QDVESTFSSPEDSLPK 70.701 0.00033347 3140300 1326.5 1176.5 1241 1116.3 1343.4 1688.4 1635.7 5273.3 1404.9 1321 TRUE FALSE FALSE 1171.009681 1212.746571 1308.092214 1161.827539 1244.300058 1656.196583 1698.789497 5873.591157 1346.989427 1313.142633 0.891761223 0.923545196 0.996153945 0.884768729 0.947574183 1.261246525 1.293682388 4.472927013 1.025775413 1 10.35880791 -4.234392676 3.116937755 0.964681111 5.134645108 0.989257136 0.108126484 0.030054597 0.416085731 0.016256104 0.315438755 5.83E-05 4.234392676 4.169963997 up LKTLGSSNLGSS(ph)EMLLS(ph)EMTCES(ph)QTCLSK ddPTM_HeLa_CUDC101_4h_R1 1 LKTLGSSNLGSSEMLLSEMTCESQTCLSK 29 1 H0YA93;Q86UW6-2;Q86UW6 H0YA93 N4BP2 NEDD4-binding protein 2 3 0 LKT(0.018)LGS(0.028)S(0.031)NLGS(0.454)S(0.463)EMLLS(0.486)EMT(0.483)CES(0.486)QT(0.148)CLS(0.402)K 40.937 0.030625 18140000 1692.2 1217.4 921.45 1049.5 1921.1 1451.5 1213.7 1413.4 1754.7 1371.1 TRUE FALSE FALSE 1493.842881 1254.906651 971.2663742 1092.303146 1779.38428 1423.815056 1260.512816 1574.295743 1682.370523 1362.944636 1.096040765 0.920731934 0.712623498 0.801428846 1.305544065 1.044660963 0.924845208 1.155069473 1.234364536 1 10.41251124 -4.23416267 21.81489295 1.010720452 1.155070583 0.063951388 0.171353831 3541.9163 2832431.729 0.022366764 1.92201972 5.83E-05 4.23416267 0.144350131 QDSLS(ph)SEVDTLK ddPTM_HeLa_CUDC101_4h_R1 1 QDSLSSEVDTLK 12 0 Q08378;Q08378-2;Q08378-4 Q08378 GOLGA3 Golgin subfamily A member 3 1 0 QDS(0.325)LS(0.63)S(0.04)EVDT(0.005)LK 115.1 0.004472 1880800 1086 1129.9 925.46 873.49 947.15 1096.9 1264 1829.2 1063.6 1026 TRUE FALSE FALSE 958.7007263 1164.71088 975.493167 909.1146977 877.2806315 1075.97846 1312.752903 2037.428734 1019.757958 1019.897306 0.939997312 1.141988387 0.956462147 0.891378663 0.860165652 1.054987059 1.28714224 1.997680278 0.99986337 1 9.994208179 -4.233987895 1.747764139 0.970391625 2.39563549 0.946840614 0.073282641 0.153082815 0.432216288 0.01076701 0.369200786 5.83E-05 4.233987895 1.425243864 DSSSLSSCTSGILEERS(ph)PAFR ddPTM_HeLa_CUDC101_4h_R1 1 DSSSLSSCTSGILEERSPAFR 21 1 Q9H3Q1;Q9H3Q1-2 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 DSSSLS(0.002)S(0.005)CT(0.004)S(0.012)GILEERS(0.977)PAFR 64.346 0.0065057 22959000 1099 934.41 1152.1 991.27 1030 1033.5 1032.9 1240.6 1004 1010.1 TRUE FALSE FALSE 970.176886 963.1980646 1214.386011 1031.698275 954.018952 1013.787709 1072.739299 1381.824889 962.614695 1004.09188 0.966223216 0.959272835 1.209437139 1.027493893 0.950131129 1.009656317 1.068367666 1.37619367 0.958691843 1 9.971675575 -4.233980147 2.468237345 1.000160942 1.476361865 0.696320304 0.0719122 0.245976457 1.727933346 0.010153737 0.253067322 5.83E-05 4.233980147 0.476200923 DFTNEAPPAPLPDASAS(ph)PLSPHRR ddPTM_HeLa_CUDC101_4h_R1 1 DFTNEAPPAPLPDASASPLSPHRR 24 1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 DFTNEAPPAPLPDAS(0.234)AS(0.609)PLS(0.157)PHRR 74.308 0.00075253 104490000 2427.4 1722.3 1509.4 1670.6 3013.7 2217.2 1899.6 2093.5 1998.8 2206.1 TRUE FALSE FALSE 2142.863852 1775.362022 1591.00273 1738.734289 2791.385355 2174.910604 1972.868208 2331.815578 1916.408618 2192.978019 0.977147893 0.80956672 0.725498713 0.79286444 1.272874297 0.991761242 0.899629723 1.063310055 0.873884098 1 11.09867564 -4.233731649 21.66737686 0.960963557 1.063310835 0.028304923 0.147644597 4320.545943 3378319.373 0.020504846 1.796743677 5.84E-05 4.233731649 0.102347278 KSDGACDS(ph)PS(ph)SDKENSSQIAQDHQK ddPTM_HeLa_CUDC101_4h_R1 1 KSDGACDSPSSDKENSSQIAQDHQK 25 2 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 2 0 KS(0.012)DGACDS(0.789)PS(0.557)S(0.557)DKENS(0.052)S(0.033)QIAQDHQK 45.679 0.028167 17180000 2305.2 2125.7 2297.8 1955 2124.7 2039.1 1842.6 2093.4 2303.7 2103.5 TRUE FALSE FALSE 2034.98795 2191.190297 2422.026018 2034.73335 1967.965114 2000.207565 1913.669699 2331.704194 2208.740511 2090.988288 0.973218244 1.047920885 1.158316396 0.973096483 0.941165058 0.956584777 0.915198669 1.115120638 1.056314147 1 11.02996927 -4.233664518 23.46070122 0.992864315 1.115121043 0.189808395 0.067290508 4883.078622 4124458.792 0.009077518 1.000805286 5.84E-05 4.233664518 0.122256728 GRLT(ph)PSPDIIVLSDNEASSPR ddPTM_HeLa_CUDC101_4h_R1 3 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 GRLT(0.816)PS(0.181)PDIIVLSDNEAS(0.003)SPR;GRLT(0.499)PS(0.499)PDIIVLS(0.002)DNEASSPR;GRLT(0.411)PS(0.411)PDIIVLS(0.175)DNEAS(0.003)SPR ;; 151.28 9.21E-06 48402000 6258.6 6242.5 5852.2 5372.8 6424.8 5154.1 4942.8 5721.4 5830.2 5575.95 TRUE FALSE FALSE 5524.976395 6434.824026 6168.587634 5591.926007 5950.855304 5055.79413 5133.445452 6372.701049 5589.876688 5542.784001 0.996787245 1.16093718 1.112904207 1.008865943 1.073622083 0.912139843 0.926149287 1.149729278 1.008496215 1 12.43639507 -4.233080558 23.12239028 1.013241592 1.149729837 0.205786355 0.073271287 4324.797069 3526071.614 0.010474182 1.18394432 5.85E-05 4.233080558 0.136488245 SLTS(ph)SLENIFSR ddPTM_HeLa_CUDC101_4h_R1 3 SLTSSLENIFSR 12 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 0 S(0.002)LT(0.075)S(0.919)S(0.004)LENIFSR;SLT(0.066)S(0.868)S(0.066)LENIFSR;SLT(0.067)S(0.896)S(0.037)LENIFSR ;; 239.38 3.21E-43 280394000 10228 8400.9 8582.6 8458 9641.1 8754.8 8366.1 6540.8 9093.1 8611.8 TRUE FALSE FALSE 9029.089345 8659.721771 9046.601317 8802.953799 8929.895261 8587.816776 8688.783279 7285.378233 8718.278569 8560.576631 1.054729107 1.011581596 1.05677476 1.028313182 1.043141794 1.003182046 1.014976403 0.851038259 1.018421883 1 13.06349226 -4.233057945 3.281408785 1.027495453 0.820219534 0.885313948 0.018887021 0.110998866 1.793028206 0.003212426 0.059926497 5.85E-05 4.233057945 -0.207275919 SLSLEAT(ph)SPLSAEK ddPTM_HeLa_CUDC101_4h_R1 2 SLSLEATSPLSAEK 14 0 Q86YC2;H3BN63 Q86YC2 PALB2 Partner and localizer of BRCA2 1 0 SLSLEAT(0.517)S(0.482)PLSAEK;SLSLEAT(0.614)S(0.385)PLS(0.001)AEK ; 196.67 9.41E-16 27060000 7428.3 6371.9 5902.8 6281.1 6330.6 5984 5288 2919.7 7346.2 7383.7 TRUE FALSE FALSE 6557.565935 6568.210686 6221.923223 6537.270407 5863.60425 5869.86517 5491.959931 3252.066846 7043.386527 7339.781424 0.893427959 0.894878241 0.847698707 0.890662818 0.798879955 0.799732966 0.748245706 0.443074072 0.959618021 1 12.84152139 -3.698932591 0.442314355 0.951327642 2.52E-37 0.866160296 0.053786078 2.043041382 0.188468682 0.013480317 1.134235325 0.000200017 3.698932591 -0.951327642 down DSQDASAEQS(ph)DHDDEVASLASASGGFGTK ddPTM_HeLa_CUDC101_4h_R1 5 DSQDASAEQSDHDDEVASLASASGGFGTK 29 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 DS(0.002)QDAS(0.083)AEQS(0.915)DHDDEVASLASASGGFGTK;DSQDAS(0.046)AEQS(0.953)DHDDEVASLASASGGFGTK;DS(0.004)QDAS(0.072)AEQS(0.841)DHDDEVAS(0.073)LAS(0.008)AS(0.003)GGFGTK;DS(0.001)QDAS(0.044)AEQS(0.955)DHDDEVASLASASGGFGTK;DSQDAS(0.018)AEQS(0.981)DHDDEVAS(0.001)LASASGGFGTK ;;;; 118.06 4.20E-12 944820300 12070.1 10082.81 8878.9 8516.24 12341.8 10595.6 9422.44 10001.3 10532.3 10359.3 TRUE FALSE FALSE 10655.26118 10393.44943 9358.920191 8863.569078 11431.37 10393.50658 9785.866667 11139.80757 10098.15414 10297.68242 1.034724197 1.00929986 0.908837524 0.860734359 1.110091527 1.00930541 0.950297967 1.081778123 0.980623962 1 13.33003206 -4.23302154 22.69613311 1.001150072 1.08177854 0.120290585 0.066614678 4847.467809 3871248.417 0.009224513 0.96797082 5.85E-05 4.23302154 0.080628468 SDTEIS(ph)LEVTDVEESVEKEK ddPTM_HeLa_CUDC101_4h_R1 2 SDTEISLEVTDVEESVEKEK 20 1 P26374 P26374 CHML Rab proteins geranylgeranyltransferase component A 2 1 0 S(0.001)DT(0.005)EIS(0.994)LEVTDVEESVEKEK;SDTEIS(0.999)LEVTDVEESVEKEK ; 152.48 8.38E-06 8566000 3207.2 2044.59 2062 2132.84 3024.6 2757.29 2748.52 3861.6 3100.5 2743 TRUE FALSE FALSE 2831.256878 2107.581394 2173.477957 2219.826434 2801.481284 2704.699287 2854.531337 4301.188935 2972.696078 2726.684514 1.038351472 0.772946552 0.797113838 0.814111945 1.027431399 0.991937011 1.046887281 1.577442829 1.090223699 1 11.41293207 -4.233014534 2.844595859 0.970072213 1.71111336 0.751438045 0.108187515 0.202205751 2.12360622 0.016487138 0.355975608 5.85E-05 4.233014534 0.741041147 SLVESVSSSPNKES(ph)NEEEQVWHFLGK ddPTM_HeLa_CUDC101_4h_R1 1 SLVESVSSSPNKESNEEEQVWHFLGK 26 1 Q9H2U2-3;Q9H2U2;Q9H2U2-6;Q9H2U2-2;Q9H2U2-4 Q9H2U2-3 PPA2 "Inorganic pyrophosphatase 2, mitochondrial" 1 0 S(0.015)LVES(0.034)VS(0.197)S(0.222)S(0.222)PNKES(0.309)NEEEQVWHFLGK 51.044 0.012928 192010000 1988.5 1907.2 1679.5 1774.9 2142.3 1556.2 1905.9 1425 1845.4 1889.6 TRUE FALSE FALSE 1755.411044 1965.958571 1770.29885 1847.288094 1984.266797 1526.518078 1979.411201 1587.21624 1769.331831 1878.360575 0.934544234 1.046635346 0.942470191 0.983457659 1.056382264 0.812686392 1.053797246 0.845000827 0.94195537 1 10.87525832 -4.232957611 23.00156453 0.972495253 0.845000267 0.236037433 0.069881206 3563.56965 2877763.427 0.008588051 0.968777521 5.85E-05 4.232957611 -0.127494985 AGSPS(ph)RDVGPSLGLK ddPTM_HeLa_CUDC101_4h_R1 2 AGSPSRDVGPSLGLK 15 1 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-9;Q8TEW0-8;Q5VWU8;Q8TEW0-10;F5GZI3 Q5VWV2;F5GZI3 PARD3 Partitioning defective 3 homolog 1 0 AGS(0.159)PS(0.841)RDVGPSLGLK;AGS(0.122)PS(0.878)RDVGPSLGLK ; 113.54 0.0010558 55634900 5387.4 5581 4856.1 4594.2 5504.7 5753.3 5077.5 5048.3 5918 5026 TRUE FALSE FALSE 4755.897139 5752.943995 5118.635455 4781.571334 5098.629248 5643.565388 5273.340876 5622.978066 5674.057535 4996.105128 0.95192095 1.151485777 1.02452517 0.957059792 1.020520809 1.129593002 1.055490375 1.125472327 1.135696185 1 12.28658812 -4.232665533 0.343050903 0.980118738 1.227016032 0 0.076527748 5.819291587 0.473595656 0.022100236 0.598224187 5.85E-05 4.232665533 0.246897294 SQLQALHIGLDS(ph)SSIGSGPGDAEADDGFPESR ddPTM_HeLa_CUDC101_4h_R1 1 SQLQALHIGLDSSSIGSGPGDAEADDGFPESR 32 0 O75116;Q14DU5;E9PF63 O75116 ROCK2 Rho-associated protein kinase 2 1 0 SQLQALHIGLDS(0.382)S(0.304)S(0.304)IGS(0.009)GPGDAEADDGFPESR 78.909 1.57E-06 12402000 1301.9 644.85 727.79 633.78 1290.8 1047.8 1116.1 1639.9 1078.1 1097.7 TRUE FALSE FALSE 1149.293256 664.7170642 767.1365288 659.6282878 1195.580256 1027.814961 1159.148351 1826.579587 1033.660262 1091.170832 1.053266109 0.609177816 0.703039805 0.604514223 1.095685681 0.941937716 1.062297779 1.67396299 0.947294623 1 10.09166127 -4.232271545 2.590409662 0.943335 1.85879635 0.626092276 0.179742696 0.334140644 2.676743602 0.028531836 0.683765975 5.86E-05 4.232271545 0.91546135 NGS(ph)EADIDEGLYSR ddPTM_HeLa_CUDC101_4h_R1 4 NGSEADIDEGLYSR 14 0 P22314;P22314-2;Q5JRR9;Q5JRS0;Q5JRS2;Q5JRS1;Q5JRS3 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 NGS(1)EADIDEGLYSR;NGS(0.998)EADIDEGLY(0.001)S(0.001)R;NGS(1)EADIDEGLYSR;NGS(1)EADIDEGLYSR ;;; 197.1 1.86E-16 96924000 7549 6715.3 6584.84 5702.73 6976.31 6350.77 6813.7 9149.2 6717.1 5597.55 TRUE FALSE FALSE 6664.117664 6922.190433 6940.836368 5935.311979 6461.68151 6229.639643 7076.506691 10190.70795 6440.218295 5564.255524 1.197665642 1.244046109 1.24739713 1.066685732 1.161284108 1.119581877 1.271779605 1.831459375 1.157426769 1 12.44197296 -4.232120565 2.280741846 1.120949536 2.042979507 0.87580207 0.07614139 0.202594112 1.141353629 0.014015956 0.383119772 5.86E-05 4.232120565 0.922029971 LLAS(ph)PSSR ddPTM_HeLa_CUDC101_4h_R1 2 LLASPSSR 8 0 Q15003;C9J470;E9PHA2;C9JZP1 Q15003 NCAPH Condensin complex subunit 2 1 0 LLAS(0.945)PS(0.054)S(0.001)R;LLAS(0.649)PS(0.351)S(0.001)R ; 112.11 0.010631 139111000 7330.2 6729.7 5661.2 6122.2 6860.5 6360 5969 3188.6 6565.7 6630.1 TRUE FALSE FALSE 6470.965068 6937.03408 5967.261596 6371.889778 6354.414583 6238.693596 6199.226329 3551.577335 6295.059067 6590.66387 0.981838127 1.052554677 0.905411308 0.966805454 0.964153947 0.946595627 0.940607267 0.538880059 0.955147947 1 12.68620808 -4.232107472 3.064400885 0.98301667 0.451259722 0.921823934 0.037459833 0.076741394 1.002971582 0.005057737 0.101831599 5.86E-05 4.232107472 -0.531756948 APS(ph)PTSSAGEEGTK ddPTM_HeLa_CUDC101_4h_R1 2 APSPTSSAGEEGTK 14 0 O94964-2;H0YDM2;O94964;O94964-3 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 0 APS(0.911)PT(0.088)S(0.001)SAGEEGTK;APS(0.484)PT(0.484)S(0.03)S(0.001)AGEEGTK ; 118.77 0.0015376 33525000 4962.3 4210.3 4627.1 4554.7 4589.7 3539.3 2765.2 2904.2 4508 5843 TRUE FALSE FALSE 4380.626716 4340.014353 4877.255022 4740.460353 4251.126975 3471.793749 2871.85469 3234.802389 4322.178332 5808.245576 0.754208247 0.747216056 0.83971226 0.816160455 0.731912403 0.597735358 0.494444433 0.556932786 0.744145246 1 12.50388674 -4.232024303 0.119360453 1.13624796 1.44E-17 0.539347606 0.095104358 13.44280667 0.264269527 0.522618641 2.621339965 5.86E-05 4.232024303 -1.13624796 NNS(ph)NTCNIENELEDS(ph)RK ddPTM_HeLa_CUDC101_4h_R1 1 NNSNTCNIENELEDSRK 17 1 Q6PL18;A0A0B4J211 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 2 0 NNS(0.747)NT(0.253)CNIENELEDS(1)RK 76.98 0.0087502 3690800 3487.5 2703.1 2246.6 2226.7 2149.7 2381.1 1758.1 839.92 3034.5 1463.8 TRUE FALSE FALSE 3078.700537 2786.379307 2368.057992 2317.514451 1991.120914 2335.684485 1825.910506 935.5330977 2909.416626 1455.093252 2.115809782 1.914914596 1.627426962 1.59269136 1.368380281 1.605178555 1.254840886 0.642936868 1.999470907 1 10.5068959 -4.231870268 1.71030009 1.573109486 0.264825982 0.487519914 0.311817128 0.992154154 2.642044388 0.061481308 2.164607708 5.86E-05 4.231870268 -1.308283504 QTS(ph)PDPCPQLPLVPR ddPTM_HeLa_CUDC101_4h_R1 1 QTSPDPCPQLPLVPR 15 0 A0A1W2PQC8;Q5D1E8 A0A1W2PQC8 ZC3H12A Ribonuclease ZC3H12A 1 0 QT(0.22)S(0.78)PDPCPQLPLVPR 115.04 0.0015951 7710800 1154.2 1283 1187.1 1373.6 1215.9 929.69 883.44 526.51 930.56 930.95 TRUE FALSE FALSE 1018.906426 1322.527709 1251.278217 1429.621345 1126.205479 911.9577122 917.5145767 586.4457702 892.2019229 925.412668 1.101029261 1.429122115 1.352129985 1.54484739 1.21697651 0.985460588 0.991465331 0.633712711 0.964112502 1 9.853953038 -4.231843725 1.467561823 1.144971095 0.415449343 0.443463345 0.190118397 1.158931318 2.113714963 0.032175583 1.254020018 5.86E-05 4.231843725 -0.729521751 TSS(ph)VPEYVYNLHLVENDFVGGR ddPTM_HeLa_CUDC101_4h_R1 1 TSSVPEYVYNLHLVENDFVGGR 22 0 Q99959-2;Q99959 Q99959-2 PKP2 Plakophilin-2 1 0 T(0.044)S(0.044)S(0.88)VPEY(0.032)VYNLHLVENDFVGGR 132.88 1.93E-07 5092500 1040.3 830.68 997.37 1045.4 1083 814.08 786.52 356.02 974.29 690.28 TRUE FALSE FALSE 918.357611 856.2722662 1051.290839 1088.035931 1003.109248 798.5527803 816.8563399 396.5478777 934.1293538 686.1741839 1.338373889 1.247893445 1.532104914 1.58565559 1.461887187 1.163775611 1.190450412 0.577911392 1.361358932 1 9.422431038 -4.231368539 3.128231736 1.247195474 0.449623904 0.576070831 0.182118922 0.313999584 4.359031012 0.03192857 0.633747117 5.87E-05 4.231368539 -0.79757157 RYS(ph)PDELR ddPTM_HeLa_CUDC101_4h_R1 1 RYSPDELR 8 1 S5FZ81;Q8WUB8-3;Q8WUB8-2;Q8WUB8 S5FZ81 PHF10 PHD finger protein 10 1 0 RY(0.436)S(0.564)PDELR 100.93 0.0095923 12261000 967.59 1023.3 787.42 898.07 887.04 1024 739.79 977.04 865.36 933.07 TRUE FALSE FALSE 854.170567 1054.82666 829.990307 934.6971764 821.6048264 1004.468906 768.3239481 1088.262284 829.6894945 927.5200581 0.920918701 1.137254824 0.894848904 1.007737966 0.88580815 1.082961923 0.828363701 1.173303234 0.894524584 1 9.857234671 -4.231347787 24.05840872 0.968267916 1.173303794 0.323276198 0.091498244 6179.839171 4940687.787 0.01077044 1.657555238 5.87E-05 4.231347787 0.205035878 SSPRPTAEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 SSPRPTAEKK 10 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 0 1 SSPRPTAEK(1)K 98.754 0.017519 1001700 606.67 461.8 544.63 795.97 502.82 535.09 437.7 475.35 157.82 298.72 FALSE TRUE FALSE 535.5570623 476.0275106 574.0743452 828.4330971 465.7279704 524.8840498 454.5822356 529.4619226 151.3145928 296.9432002 1.803567356 1.603092815 1.933279984 2.789870577 1.568407595 1.767624413 1.53087269 1.783041074 0.509574197 1 8.214043186 -8.998077873 0.642868417 0.947311483 1.867696774 0.55311838 0.376756368 0.626637705 0.441948209 0.313419901 0.079658459 1.00E-09 8.998077873 0.920385291 SGTAETEPVEQDSS(ph)QPSLPLVR ddPTM_HeLa_CUDC101_4h_R1 2 SGTAETEPVEQDSSQPSLPLVR 22 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0;H7C3N7 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 SGTAETEPVEQDS(0.048)S(0.947)QPS(0.005)LPLVR;SGTAETEPVEQDS(0.29)S(0.71)QPSLPLVR ; 196.02 4.46E-19 42485000 5251.2 4199.5 4498.4 4340.4 4960.8 5319.1 6192.4 18349.3 4811.2 4102 TRUE FALSE FALSE 4635.662296 4328.881617 4741.597111 4517.420273 4594.851667 5217.64703 6431.242942 20438.11014 4612.8803 4077.601122 1.136860168 1.06162459 1.162839858 1.10786223 1.126851678 1.279587403 1.577212373 5.012287748 1.13127306 1 11.99350494 -4.231174471 2.838902032 1.093424031 5.888103454 0.995412974 0.078610205 0.026755037 0.278060363 0.013894584 0.304938923 5.87E-05 4.231174471 4.794679423 up SMGS(ph)QEDDSGNKPSSYS ddPTM_HeLa_CUDC101_4h_R1 2 SMGSQEDDSGNKPSSYS 17 1 H7C3P9;Q9UNS2-2;Q9UNS2 H7C3P9 COPS3 COP9 signalosome complex subunit 3 1 0 S(0.035)MGS(0.965)QEDDSGNKPSSYS;SMGS(1)QEDDSGNKPSSYS ; 110.32 0.005256 36699000 3800.5 3334 2901.7 3176.4 4229 3763.9 3774.4 7523.6 3764.7 3341.3 TRUE FALSE FALSE 3355.011151 3436.716588 3058.574679 3305.947322 3917.035095 3692.109879 3919.979872 8380.056213 3609.517473 3321.425799 1.010111727 1.034711234 0.920861962 0.995339809 1.179323379 1.111603902 1.180209979 2.523029783 1.08673735 1 11.69758697 -4.2309178 2.958854625 1.019317865 2.839331944 0.974306471 0.071592866 0.048685742 0.571166469 0.010270524 0.216433129 5.88E-05 4.2309178 1.820014079 up CSPTVAFVEFPSS(ph)PQLK ddPTM_HeLa_CUDC101_4h_R1 1 CSPTVAFVEFPSSPQLK 17 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 CSPTVAFVEFPS(0.15)S(0.85)PQLK 153.23 9.11E-05 49758000 5057.5 3989.3 4167.3 4083.6 4072.8 5071.7 5226.8 6755.1 4884.7 4921.8 TRUE FALSE FALSE 4464.667517 4112.205605 4392.596843 4250.146859 3772.357658 4974.965773 5428.399427 7524.073279 4683.350598 4892.524915 0.912548754 0.840507852 0.897817982 0.868702139 0.771045161 1.016850371 1.109529235 1.537871224 0.957246142 1 12.25636348 -4.230711779 1.714313443 0.926882669 1.779568516 0.8863302 0.068751038 0.286730462 0.766404299 0.011567649 0.408785888 5.88E-05 4.230711779 0.852685847 IPGTPGAGGRLS(ph)PENNQVLTK ddPTM_HeLa_CUDC101_4h_R1 2 IPGTPGAGGRLSPENNQVLTK 21 1 Q16514-2;Q16514 Q16514-2 TAF12 Transcription initiation factor TFIID subunit 12 1 0 IPGT(0.033)PGAGGRLS(0.965)PENNQVLT(0.002)K;IPGT(0.279)PGAGGRLS(0.716)PENNQVLT(0.005)K ; 56.416 0.013527 398410000 4351.4 3848.2 3736 3943 4237.2 3281.9 3116.5 3973.3 3852.4 3600.8 TRUE FALSE FALSE 3841.335488 3966.758481 3937.979461 4103.812583 3924.630198 3219.303226 3236.704449 4425.604411 3693.602441 3579.382281 1.073183914 1.108224316 1.100184096 1.146514192 1.096454608 0.8994019 0.904263416 1.236415689 1.031910579 1 11.80549492 -4.230300865 23.96634961 1.040553622 1.236416282 0.352476527 0.079856463 7162.680081 5512735.322 0.011768793 1.966034525 5.88E-05 4.230300865 0.19586266 RGS(ph)LGEEGSEPPPPPPLPLAR ddPTM_HeLa_CUDC101_4h_R1 2 RGSLGEEGSEPPPPPPLPLAR 21 1 Q14934-18;Q14934-17;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-9;Q14934-10;Q14934-11;Q14934-12;Q14934-13;Q14934-14;Q14934-15;Q14934-16;Q14934-2 Q14934-18 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 RGS(1)LGEEGSEPPPPPPLPLAR;RGS(0.996)LGEEGS(0.004)EPPPPPPLPLAR ; 156.02 2.00E-07 86948000 1428.23 1249.53 1290.67 1355.79 1238.32 1339.55 1305.34 1601.34 1308.44 1295.45 TRUE FALSE FALSE 1260.815044 1288.026538 1360.447524 1411.084976 1146.971601 1314.000316 1355.687401 1783.630073 1254.505549 1287.744606 0.979087809 1.000218935 1.05645756 1.095780149 0.890682512 1.020388911 1.052761079 1.385080601 0.974188161 1 10.33063078 -4.230117938 2.681741442 0.99767436 1.479577251 0.833704489 0.050971159 0.145776363 1.281910469 0.006861408 0.161035729 5.89E-05 4.230117938 0.48190289 AMSLNT(ph)LNVDAPR ddPTM_HeLa_CUDC101_4h_R1 1 AMSLNTLNVDAPR 13 0 Q6P597-2;Q6P597;Q6P597-3 Q6P597-2 KLC3 Kinesin light chain 3 1 0 AMS(0.128)LNT(0.872)LNVDAPR 174.24 1.47E-06 22274000 523.59 555.18 321.25 344.84 595.53 586.66 348.45 590.82 414.7 527.06 TRUE FALSE FALSE 462.2155739 572.2844377 338.6177467 358.9040657 551.5989384 575.4704379 361.8898332 658.0765606 397.6058905 523.9250237 0.882217022 1.092302165 0.646309551 0.68502944 1.052820372 1.098383188 0.690728285 1.25605102 0.758898454 1 9.033216559 -4.229930687 23.1943638 0.920857843 1.25605258 0.274590481 0.172122453 5079.673638 3739114.609 0.022115382 3.506355846 5.89E-05 4.229930687 0.335194736 LIIESPS(ph)NTSSTEPA ddPTM_HeLa_CUDC101_4h_R1 1 LIIESPSNTSSTEPA 15 0 P38432 P38432 COIL Coilin 1 0 LIIES(0.282)PS(0.718)NTSSTEPA 192.15 1.26E-11 13775000 1260.6 1505.9 1306.8 1007.2 1681.2 1284.8 1327.1 1271.6 1590.8 1448.7 TRUE FALSE FALSE 1112.834379 1552.294994 1377.449561 1048.277969 1557.181225 1260.294581 1378.286692 1416.353804 1525.226551 1440.083068 0.772757075 1.077920454 0.956507018 0.727928821 1.081313474 0.875154086 0.957088325 0.983522295 1.059124008 1 10.49193632 -4.229792368 0.668209947 0.904843203 1.03148263 0 0.12076162 9.929749316 2.96224641 0.021277196 0.962973616 5.89E-05 4.229792368 0.126639427 SSQESQRQAPELLVSPASDDIPTVVIHPPEEDLEAALKGEEQK ddPTM_HeLa_CUDC101_4h_R1 1 SSQESQRQAPELLVSPASDDIPTVVIHPPEEDLEAALKGEEQK 43 2 A0A0A0MST8;E9PFN4;Q9Y6M7-10;Q9Y6M7-12;Q9Y6M7;Q9Y6M7-8;Q9Y6M7-7 A0A0A0MST8 SLC4A7 Anion exchange protein;Sodium bicarbonate cotransporter 3 0 0 28.622 0.037318 10943000 1375.4 1077.6 1218.9 1102.4 1147.5 1438.9 1194.8 1321.8 1375.6 1774.1 FALSE FALSE TRUE 1214.177697 1110.799579 1284.797421 1147.360637 1062.851211 1411.45538 1240.883836 1472.268369 1318.897186 1763.547574 0.688485933 0.629866523 0.72853006 0.650598064 0.602677935 0.800350045 0.703629352 0.834833373 0.747865952 1 10.78426478 -9.130276803 0.814182275 1.006995134 0.700839321 0.154702653 0.102118693 0.271091676 0.314633406 0.051553761 0.013794858 7.41E-10 9.130276803 -0.306155813 KKTEFLDLDNSPLSPPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 KKTEFLDLDNSPLSPPSPR 19 2 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 KKTEFLDLDNSPLS(0.014)PPS(0.986)PR;KKTEFLDLDNS(0.001)PLS(0.001)PPS(0.998)PR ; 73.459 0.0046583 243290000 13337.2 12399.1 12391.1 11759.6 13915.7 13644.9 13208.7 16983.1 12943.6 14477 TRUE FALSE FALSE 11773.83363 12781.10157 13061.00035 12239.20732 12889.16653 13384.64627 13718.16398 18916.38746 12410.05933 14390.89016 0.818144917 0.888138359 0.907588078 0.850482992 0.895647621 0.930077717 0.953253331 1.314469588 0.862355226 1 13.81286821 -4.229051122 2.853024544 0.905281986 1.406564172 0.873971644 0.04745112 0.177102057 1.857347474 0.009557529 0.212185729 5.90E-05 4.229051122 0.501282186 DAPTS(ph)PASVASSSSTPSSK ddPTM_HeLa_CUDC101_4h_R1 3 DAPTSPASVASSSSTPSSK 19 0 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 DAPT(0.002)S(0.998)PASVASSSSTPSSK;DAPT(0.053)S(0.947)PAS(0.001)VASSSSTPSSK;DAPT(0.373)S(0.625)PAS(0.002)VASSSSTPSSK ;; 300.2 8.54E-124 534775000 10288.6 9595.1 9560.8 9303.5 10624.9 9624.2 9106.5 7607.3 9903 9828.4 TRUE FALSE FALSE 9082.585905 9890.713658 10077.68577 9682.936943 9841.122295 9440.63442 9457.740755 8473.284282 9494.794148 9769.94024 0.929646004 1.012361736 1.031499223 0.991094797 1.007285823 0.966293978 0.968044893 0.867281076 0.971837485 1 13.25413402 -4.228471383 3.009764247 0.978480983 0.844121108 0.606073094 0.028283224 0.323185725 3.962656235 0.005084938 0.107510107 5.91E-05 4.228471383 -0.134359875 (ac)SETAPAETATPAPVEKS(ph)PAKK ddPTM_HeLa_CUDC101_4h_R1 2 SETAPAETATPAPVEKSPAKK 21 2 P16401 P16401 HIST1H1B Histone H1.5 1 0 SETAPAET(0.001)AT(0.002)PAPVEKS(0.997)PAKK;SETAPAETATPAPVEKS(1)PAKK ; 85.467 0.00035913 1049870000 8615.7 7826.2 12497.1 11045.2 8523.6 6551.8 6466.3 10539.2 7473.7 9590.6 TRUE FALSE FALSE 7605.780707 8067.315946 13172.73103 11495.671 7894.831009 6426.835331 6715.707357 11738.93993 7165.630923 9533.554685 0.797790641 0.846202305 1.381722921 1.205811618 0.828109899 0.674127914 0.704428472 1.231328745 0.751622156 1 13.21879852 -4.228470587 22.54039529 0.920290272 1.231330936 0.165016171 0.215738213 5687.323338 3888108.149 0.030852202 5.158832731 5.91E-05 4.228470587 0.311040664 GGRS(ph)PDEVTLTSIVPTR ddPTM_HeLa_CUDC101_4h_R1 3 GGRSPDEVTLTSIVPTR 17 1 A0A0C4DGG1;Q9UKS6;H0YDM6 A0A0C4DGG1 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 0 GGRS(1)PDEVTLTSIVPTR;GGRS(1)PDEVTLTSIVPTR;GGRS(1)PDEVTLTSIVPTR ;; 122.96 0.00016658 131605000 2354.86 2699.7 2221.46 2099.87 3177.72 2503.44 2619.7 2577.12 2982.99 2884.84 TRUE FALSE FALSE 2078.826881 2782.874557 2341.558847 2185.511775 2943.305927 2455.691053 2720.742707 2870.488924 2860.02989 2867.680843 0.724915705 0.970426874 0.816533978 0.762118204 1.026371513 0.856333458 0.948760638 1.000979216 0.997332007 1 11.48566875 -4.228253753 0.859033301 0.86938769 1.081629646 0.067001402 0.101508807 4.265747848 2.211965224 0.018654638 0.864712487 5.91E-05 4.228253753 0.212241957 RPEGPGAQAPS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 RPEGPGAQAPSSPR 14 1 P40222 P40222 TXLNA Alpha-taxilin 1 0 RPEGPGAQAPS(0.5)S(0.5)PR 84.195 0.01112 1566200000 1123.1 1234 1266 1296.3 1348 1055.6 1075.3 1113.6 1077.1 1262.2 TRUE FALSE FALSE 991.4519205 1272.018077 1334.443789 1349.168717 1248.560726 1035.466189 1116.774681 1240.367723 1032.701482 1254.692378 0.790195221 1.013808723 1.063562521 1.075298408 0.995113023 0.825274949 0.890078477 0.988583133 0.823071456 1 10.29311798 -4.227458367 20.92132094 0.92976634 0.988584043 0.006639507 0.099350166 6096.155167 3752668.292 0.015976617 2.317987632 5.92E-05 4.227458367 0.058817703 T(ph)S(ph)LKNAYS(ph)SAKRLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 TSLKNAYSSAKRLSPK 16 3 Q68J44 Q68J44 DUPD1 Dual specificity phosphatase DUPD1 4 0 T(0.998)S(0.998)LKNAY(0.019)S(0.495)S(0.495)AKRLS(0.995)PK 50.155 0.03133 23902000 3294.8 3203.4 3393.4 3022 2722.4 2674.4 2837.6 2551.8 3185.5 2783.1 TRUE FALSE FALSE 2908.588539 3302.092957 3576.857468 3145.250222 2521.573976 2623.390276 2947.047183 2842.286597 3054.192342 2766.545997 1.051342917 1.193579633 1.292896439 1.136887015 0.911452034 0.948254711 1.065244238 1.027377314 1.103973093 1 11.4338702 -4.227327909 18.09581364 1.050869724 1.02737575 0 0.110419068 2652.105339 1405897.938 0.016476494 1.532683497 5.92E-05 4.227327909 -0.023493974 KDSNELS(ph)DSAGEEDS(ph)ADLKR ddPTM_HeLa_CUDC101_4h_R1 1 KDSNELSDSAGEEDSADLKR 20 2 Q9Y6X9-2;Q9Y6X9 Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 2 0 KDS(0.008)NELS(0.972)DS(0.029)AGEEDS(0.991)ADLKR 74.763 0.037812 33458000 3758.2 3419.5 2699.8 2835.7 2916.6 3285.1 3071.9 3688.4 3094.3 2960.6 TRUE FALSE FALSE 3317.669493 3524.850742 2845.759354 2951.352103 2701.448229 3222.442191 3190.384212 4108.272547 2966.751644 2942.99022 1.127312443 1.197710654 0.96696188 1.002841288 0.917926336 1.094955114 1.084062118 1.395951818 1.008073905 1 11.52306703 -4.226969207 2.997847222 1.052519041 1.468676475 0.645540455 0.078247034 0.248371277 2.997078868 0.011891857 0.255649094 5.93E-05 4.226969207 0.416157434 TEKGESSSPS(ph)PSAEK ddPTM_HeLa_CUDC101_4h_R1 1 TEKGESSSPSPSAEK 15 1 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 T(0.032)EKGES(0.006)S(0.061)S(0.248)PS(0.556)PS(0.097)AEK 61.52 0.0352 8017400 3138.8 2243.7 3152.4 3734.2 3000.7 3068.1 2484.7 989.02 2809.6 3198.3 TRUE FALSE FALSE 2770.874622 2312.825738 3322.828279 3886.496817 2779.344339 3009.581104 2580.535711 1101.606039 2693.787099 3179.276369 0.871542546 0.727469232 1.045152385 1.222446986 0.874206586 0.946624563 0.811673919 0.346495841 0.847295669 1 11.63448272 -4.226777474 2.170660737 0.947035204 0.151740985 0.668609595 0.125591707 0.335314611 1.635144107 0.017945107 0.531033569 5.93E-05 4.226777474 -0.795294219 SSS(ph)QENLLDEVMK ddPTM_HeLa_CUDC101_4h_R1 6 SSSQENLLDEVMK 13 0 Q3V6T2;H0Y470;A0A2U3TZV9;A0A2R8Y7B1;H7C2C6;A0A2R8Y820;A0A2R8YCU9;A0A2R8Y885;A0A2R8YDS8;A0A2R8Y7D4;H0Y7U8;A0A2R8Y5D7;Q3V6T2-5;Q3V6T2-4;Q3V6T2-2;Q3V6T2-3;H0Y7K3;A0A2R8Y4Z5;A0A2R8Y4C6 Q3V6T2 CCDC88A Girdin 1 0 S(0.009)S(0.469)S(0.521)QENLLDEVMK;S(0.012)S(0.043)S(0.945)QENLLDEVMK;SS(0.022)S(0.978)QENLLDEVMK;SS(0.007)S(0.993)QENLLDEVMK;S(0.001)S(0.14)S(0.859)QENLLDEVMK;S(0.008)S(0.137)S(0.855)QENLLDEVMK ;;;;; 271.19 1.11E-85 109614000 29625 26031.5 23547.2 22800.7 28053.7 26118.6 23639.2 16846.9 26111.2 25920.6 TRUE FALSE FALSE 26152.40241 26833.49966 24820.23286 23730.6111 25984.23444 25620.43122 24550.97186 18764.683 25034.88528 25766.42312 1.014979933 1.041413453 0.963278168 0.920989731 1.008453301 0.994334025 0.952828095 0.728261075 0.971608871 1 14.65320466 -4.226552872 2.460821499 0.999839875 0.65226622 0.85121302 0.032317954 0.160269056 1.097540821 0.004607697 0.120988094 5.94E-05 4.226552872 -0.347573655 KNGSTAVAESVAS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 4 KNGSTAVAESVASPQK 16 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KNGSTAVAESVAS(1)PQK;KNGSTAVAESVAS(1)PQK;KNGSTAVAESVAS(1)PQK;KNGSTAVAESVAS(1)PQK ;;; 188.34 2.86E-11 507482000 29279.5 26172.3 27580 26439.7 27463.3 24768.2 22083.2 26684.7 30658.7 25497.3 TRUE FALSE FALSE 25847.40139 26978.63754 29071.05822 27518.02525 25437.38707 24295.78785 22934.95642 29722.37838 29394.93541 25345.64093 1.019796717 1.064429091 1.146984537 1.085710372 1.0036198 0.958578555 0.904887609 1.172682059 1.159762955 1 14.62945003 -4.226331354 23.32716667 1.018471556 1.172682869 0.175157495 0.077565467 6764.515283 4494417.16 0.009246758 2.192589107 5.94E-05 4.226331354 0.154211313 TSS(ph)VLGMSVESAPAVEEEKGEELEQKEK ddPTM_HeLa_CUDC101_4h_R1 1 TSSVLGMSVESAPAVEEEKGEELEQKEK 28 2 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 T(0.194)S(0.194)S(0.611)VLGMSVESAPAVEEEKGEELEQKEK 64.209 0.00054596 11483000 3940.7 3482 3599.7 3660.2 4752.7 3691.9 4454.1 10601 3376.8 2952.4 TRUE FALSE FALSE 3478.77712 3589.276293 3794.31067 3809.478777 4402.10279 3621.483159 4625.896129 11807.77499 3237.606875 2934.838993 1.185338319 1.222989166 1.292851389 1.298019682 1.499946948 1.233963146 1.576200991 4.023312698 1.10316337 1 11.51906564 -4.226306578 2.648430938 1.165864008 4.751432217 0.973249552 0.137733188 0.073091726 0.614493193 0.024473224 0.598128966 5.94E-05 4.226306578 3.585568209 up MDSFDEDLARPS(ph)GLLAQER ddPTM_HeLa_CUDC101_4h_R1 1 MDSFDEDLARPSGLLAQER 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 MDS(0.414)FDEDLARPS(0.586)GLLAQER 103.87 0.00062785 0 861.25 877.92 847.06 828.4 1015.1 846.02 1327 2955.5 786.37 828.83 TRUE FALSE FALSE 760.2955806 904.9676746 892.8546258 862.1857327 940.2180954 829.8835781 1378.182835 3291.942173 753.9554958 823.9000823 0.92280071 1.098394932 1.083692847 1.046468803 1.141179757 1.007262405 1.672754821 3.995559952 0.915105499 1 9.686325576 -4.226169395 2.17204539 0.999513474 4.96983666 0.99253474 0.0771352 0.045846887 0.223653562 0.012224758 0.362836716 5.94E-05 4.226169395 3.970323186 up VLGS(ph)EGEEEDEALS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 2 VLGSEGEEEDEALSPAK 17 0 M0R0Q7;P18858-2;P18858;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 2 0 VLGS(1)EGEEEDEALS(1)PAK;VLGS(1)EGEEEDEALS(1)PAK ; 147.6 0.0013747 254929000 22058 18475.8 17202.5 16426.1 16943.9 16292.6 13504.1 9342.5 21939 21790.3 TRUE FALSE FALSE 19472.39468 19045.0175 18132.51918 17096.02736 15693.98225 15981.8458 14024.95766 10406.01244 21034.66513 21660.69033 0.898973873 0.87924333 0.837116404 0.78926512 0.724537492 0.737827168 0.647484334 0.480410009 0.971098558 1 14.4027916 -3.691810519 0.253637321 1.00001528 5.76E-15 0.959488008 0.029968209 1.729486207 0.069337698 0.019521918 0.567613467 0.000203324 3.691810519 -1.00001528 down KS(ph)LPEEDVAEIQHAEEFLIKPESK ddPTM_HeLa_CUDC101_4h_R1 2 KSLPEEDVAEIQHAEEFLIKPESK 24 2 O60832;O60832-2;H7C2Q9;H7C0M1;C9IYT0 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 KS(1)LPEEDVAEIQHAEEFLIKPESK;KS(1)LPEEDVAEIQHAEEFLIKPESK ; 70.121 0.00034087 21802900 6852.3 6229.2 6178.3 6351.8 6310.4 6462.4 5680.4 3498.21 6951.9 6605.3 TRUE FALSE FALSE 6049.083781 6421.114269 6512.317586 6610.853859 5844.894364 6339.140487 5899.494931 3896.432086 6665.33974 6566.011382 0.921272205 0.977932248 0.991822464 1.006829485 0.890174266 0.965447685 0.898489903 0.59342451 1.015127655 1 12.68080154 -4.225222653 2.447285847 0.963507363 0.488160262 0.899721932 0.037629848 0.142304753 0.956789348 0.005502157 0.146561077 5.95E-05 4.225222653 -0.475347101 IS(ph)MPDFDLHLK ddPTM_HeLa_CUDC101_4h_R1 2 ISMPDFDLHLK 11 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IS(1)MPDFDLHLK;IS(1)MPDFDLHLK ; 143.25 0.00079469 18771000 15115.7 13201.7 11034.5 11320.9 14375.5 15278.1 15784.3 19089.8 12766.2 14410.6 TRUE FALSE FALSE 13343.86056 13608.42873 11631.05845 11782.61524 13315.04801 14986.6957 16393.10574 21262.90567 12239.97183 14324.88511 0.931516062 0.949985192 0.811947765 0.82252773 0.929504698 1.046200062 1.144379561 1.484333417 0.854455148 1 13.80623595 -4.224585955 1.356202243 0.941459989 1.745668341 0.871924478 0.067685014 0.405191376 0.603651454 0.010900753 0.456149484 5.96E-05 4.224585955 0.804208352 DT(ph)SPSSGSAVSSSK ddPTM_HeLa_CUDC101_4h_R1 1 DTSPSSGSAVSSSK 14 0 Q8NEY8;F8W6A0;F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;F8WF16;B7Z8L1;Q8NEY8-5;Q8NEY8-6;Q8NEY8-7 Q8NEY8 PPHLN1 Periphilin-1 1 0 DT(0.5)S(0.5)PSSGSAVSSSK 214.48 2.23E-23 1500000000 3568.3 2982.9 2999.7 3355.1 2813.7 2887.7 3092.4 2437.9 2953.7 2817.5 TRUE FALSE FALSE 3150.029283 3074.799613 3161.872856 3491.93548 2606.138957 2832.621934 3211.674904 2715.420682 2831.947236 2800.741385 1.124712657 1.09785203 1.128941384 1.246789689 0.93051753 1.011382896 1.146723122 0.969536387 1.011141997 1 11.45159306 -4.224578275 21.47054689 1.072448847 0.969534843 0.119906208 0.086810455 4749.482839 2766102.294 0.012282796 2.583362203 5.96E-05 4.224578275 -0.102914004 FS(ph)PGAPGGSGSQPNQK ddPTM_HeLa_CUDC101_4h_R1 4 FSPGAPGGSGSQPNQK 16 0 Q15942-2;Q15942;H0Y2Y8;H7C3D3 Q15942-2 ZYX Zyxin 1 0 FS(0.925)PGAPGGS(0.058)GS(0.018)QPNQK;FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK;FS(1)PGAPGGSGSQPNQK ;;; 264.52 3.22E-70 302999000 16516.5 13141.8 13620.9 12538.8 13116.9 12135.1 11141.2 6284.09 13707.8 15790.6 TRUE FALSE FALSE 14580.46091 13546.68328 14357.28705 13050.18646 12149.29242 11903.64319 11570.91982 6999.445404 13142.75868 15696.67681 0.928888394 0.863028745 0.914670489 0.831398048 0.774004114 0.758354353 0.737157295 0.445918935 0.837295616 1 13.93817153 -3.678581429 0.339692779 0.982328578 2.10E-17 0.783559456 0.066938546 2.014684247 0.121522224 0.016351419 0.87871153 0.000209613 3.678581429 -0.982328578 down SFS(ph)SPENFQR ddPTM_HeLa_CUDC101_4h_R1 1 SFSSPENFQR 10 0 G3V1T9;J3KPD3;Q9Y580;I3L521;F5GXV8;F5GY08 G3V1T9 RBM7 RNA-binding protein 7 1 0 S(0.185)FS(0.786)S(0.03)PENFQR 109.72 0.0084872 34460000 1060.6 867.75 963.27 865 851.32 1153.3 1636.9 4649.6 1154.3 1130.5 TRUE FALSE FALSE 936.2780758 894.484349 1015.34729 900.2784388 788.5198197 1131.302724 1700.035781 5178.89167 1106.719265 1123.775736 0.833153846 0.795963394 0.90351416 0.801119307 0.701670088 1.006697945 1.512789187 4.608474365 0.984822176 1 10.13413844 -4.224391073 2.470259954 0.889606746 5.656943062 0.992440614 0.097209218 0.040686463 0.280153525 0.015947148 0.423277572 5.96E-05 4.224391073 4.767336315 up SNS(ph)DESNFSEK ddPTM_HeLa_CUDC101_4h_R1 1 SNSDESNFSEK 11 0 A0A087WWW9;O95999 A0A087WWW9 BCL10 B-cell lymphoma/leukemia 10 1 0 S(0.012)NS(0.853)DES(0.119)NFS(0.016)EK 115.1 0.0055283 40064000 1596.3 1336.4 1610.6 1477.4 1612 1590.1 1674 3557 1307.1 1335.5 TRUE FALSE FALSE 1409.184134 1377.5729 1697.673908 1537.654758 1493.085972 1559.771492 1738.566741 3961.914502 1253.220785 1327.556387 1.061487217 1.037675623 1.278796083 1.158259471 1.124687423 1.174919203 1.309599169 2.98436627 0.944005692 1 10.37455742 -4.224150337 2.746712942 1.072441974 3.454063537 0.9726917 0.094150149 0.060937468 0.565308728 0.014194805 0.340060839 5.97E-05 4.224150337 2.381621563 up VS(ph)PAHSPPENGLDK ddPTM_HeLa_CUDC101_4h_R1 1 VSPAHSPPENGLDK 14 0 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 VS(0.938)PAHS(0.062)PPENGLDK 130.47 0.00053211 12750000 2745.6 2281.1 2283.1 2847.1 2464.3 2478.7 2297.6 2322.3 2924 2527.3 TRUE FALSE FALSE 2423.76493 2351.377987 2406.531292 2963.217044 2282.513499 2431.422927 2386.219202 2586.661245 2803.471482 2512.267507 0.964771834 0.935958444 0.95791204 1.179499013 0.908547156 0.967820075 0.949826877 1.029612188 1.115912806 1 11.29477438 -4.223607884 21.45729373 0.983572014 1.029612884 0 0.081526606 8225.666865 4664856.67 0.009057815 2.057579137 5.98E-05 4.223607884 0.04604087 STS(ph)VPENPK ddPTM_HeLa_CUDC101_4h_R1 2 STSVPENPK 9 0 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;D6RDA9;Q3MSN4;P04150-9;P04150-8;P04150-13;P04150-12;P04150-11 A0A494C0P1 NR3C1 Glucocorticoid receptor 1 0 ST(0.001)S(0.999)VPENPK;S(0.002)T(0.019)S(0.979)VPENPK ; 143.24 0.0014302 86671000 11365 7222.9 7670.6 7742.2 7737.6 9927.6 13577.9 28645 6789.2 9051.2 TRUE FALSE FALSE 10032.81193 7445.428988 8085.295838 8057.960381 7166.812663 9738.247571 14101.60415 31905.83101 6509.346302 8997.36306 1.115083593 0.827512343 0.898629497 0.895591333 0.796545901 1.082344628 1.567304115 3.546131328 0.723472673 1 13.13528652 -4.22355328 2.143098075 0.998238437 4.396201246 0.970916531 0.136344662 0.082357665 0.385517434 0.018153499 0.553874271 5.98E-05 4.22355328 3.397962809 up SIYDDISS(ph)PGLGSTPLTSR ddPTM_HeLa_CUDC101_4h_R1 1 SIYDDISSPGLGSTPLTSR 19 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 SIYDDIS(0.054)S(0.943)PGLGS(0.002)T(0.001)PLTSR 147.49 4.67E-05 6400100 1851.9 1538.3 1309 1746.6 2318 1583 1424.5 586.14 2161.1 1628 TRUE FALSE FALSE 1634.823089 1585.6932 1379.7685 1817.833897 2147.005758 1552.806912 1479.443442 652.8638083 2072.018543 1618.316584 1.0101998 0.979841161 0.852594921 1.123286949 1.326690822 0.959519867 0.914186666 0.403421565 1.280354267 1 10.66027815 -4.223026591 2.386782321 1.02087653 0.221300438 0.649280914 0.143289822 0.271907846 1.698003833 0.016759108 0.464063517 5.98E-05 4.223026591 -0.799576091 S(ph)EMTPEELQKR ddPTM_HeLa_CUDC101_4h_R1 1 SEMTPEELQKR 11 1 K7ERG4;P62316 K7ERG4 SNRPD2 Small nuclear ribonucleoprotein Sm D2 1 0 S(0.812)EMT(0.188)PEELQKR 107.69 0.015661 13738000 2671.2 2338.1 2454.2 2438.8 2443.9 2180.7 2171.4 2203.7 2663.9 2297.7 TRUE FALSE FALSE 2358.085985 2410.13409 2586.881476 2538.264805 2263.618366 2139.106781 2255.151625 2454.5603 2554.092914 2284.033178 1.032421949 1.055209755 1.132593651 1.111308202 0.991061946 0.936548033 0.98735502 1.074660528 1.118238097 1 11.15736789 -4.222929541 20.96234091 1.024209114 1.07466156 0 0.063190906 5444.699601 2963264.27 0.008366021 1.910278495 5.99E-05 4.222929541 0.050452446 TATSLPVVNFGS(ph)PLRR ddPTM_HeLa_CUDC101_4h_R1 2 TATSLPVVNFGSPLRR 16 1 Q96T17;Q96T17-2;Q96T17-5;Q96T17-4 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 TATSLPVVNFGS(1)PLRR;TATSLPVVNFGS(1)PLRR ; 140.27 0.00017594 144095000 5377.3 5310.1 5609.5 4883.7 6235.2 4950.5 4660.7 3180.5 4954.8 4877.4 TRUE FALSE FALSE 4746.981045 5473.697887 5912.766538 5082.878395 5775.241718 4856.077461 4840.46476 3542.555264 4750.561047 4848.389008 0.979084194 1.128972506 1.219532205 1.048364392 1.19116715 1.001585775 0.998365592 0.730666466 0.979822584 1 12.24328974 -4.222557795 2.727529349 1.035066134 0.654557158 0.551603789 0.087153715 0.378033915 3.423044379 0.013762279 0.336045471 5.99E-05 4.222557795 -0.380508975 (ac)S(ph)QPGQKPAAS(ph)PRPR ddPTM_HeLa_CUDC101_4h_R1 1 SQPGQKPAASPRPR 14 2 P20810-6;P20810-9;P20810-7;P20810-10;P20810-5;F8W7E0;E9PSG1 P20810-6 CAST Calpastatin 2 0 S(1)QPGQKPAAS(1)PRPR 54.073 0.013094 10806000 4123.9 2998.2 3035.8 3717.6 4862 5139.3 4695.2 11915 5260.4 4659.9 TRUE FALSE FALSE 3640.502693 3090.570988 3199.924531 3869.219797 4503.339946 5041.276415 4876.295437 13271.35544 5043.564085 4632.182708 0.785915177 0.667195399 0.690802745 0.835290843 0.972185302 1.088315538 1.052699288 2.86503281 1.088809402 1 12.17747644 -4.221568436 2.956229442 0.877660002 3.312171311 0.943343821 0.144146947 0.080376709 0.91647503 0.02114081 0.482292297 6.00E-05 4.221568436 2.434511309 up EREAANEAGDS(ph)S(ph)QDEAEDDVK ddPTM_HeLa_CUDC101_4h_R1 1 EREAANEAGDSSQDEAEDDVK 21 1 A0A0C4DH01;Q9NVU0-3;Q9NVU0-2;Q9NVU0-5;Q9NVU0-4;Q9NVU0 A0A0C4DH01 POLR3E DNA-directed RNA polymerase III subunit RPC5 2 0 EREAANEAGDS(1)S(1)QDEAEDDVK 113.49 1.75E-05 15214000 1493.2 1447.5 1426 1205 1093.1 1405.3 1207.3 1195.4 1486.5 1226 TRUE FALSE FALSE 1318.16936 1492.095759 1503.093873 1254.145108 1012.464191 1378.496244 1253.865965 1331.479504 1425.225841 1218.707697 1.081612402 1.224326196 1.233350603 1.029077859 0.830768685 1.131113102 1.028848811 1.092533925 1.169456666 1 10.25113643 -4.220424255 19.88008596 1.055835269 1.092535215 0 0.115913198 8349.74702 4045910.861 0.015785378 3.709709098 6.02E-05 4.220424255 0.036699946 NDS(ph)LPVLR ddPTM_HeLa_CUDC101_4h_R1 4 NDSLPVLR 8 0 Q9GZY8-5 Q9GZY8-5 MFF Mitochondrial fission factor 1 0 NDS(1)LPVLR;NDS(1)LPVLR;NDS(1)LPVLR;NDS(1)LPVLR ;;; 103.21 0.015901 20303500 12533.2 10579 7076.4 9605.8 9718.3 10827.9 11454.8 20439 7653.6 9494 TRUE FALSE FALSE 11064.0773 10904.92645 7458.971589 9997.566044 9001.400371 10621.37585 11896.61547 22765.69314 7338.115369 9437.529266 1.172348926 1.155485312 0.790352155 1.059341461 0.95378781 1.125440308 1.260564618 2.412251396 0.777546237 1 13.2041935 -4.220071745 2.542094329 1.059311681 2.78984823 0.900267048 0.13908461 0.11236077 0.828942457 0.016330781 0.434496708 6.02E-05 4.220071745 1.730536549 up TSAVSS(ph)PLLDQQR ddPTM_HeLa_CUDC101_4h_R1 1 TSAVSSPLLDQQR 13 0 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 T(0.012)SAVS(0.08)S(0.907)PLLDQQR 195.87 2.04E-16 12600000 2110.6 1623.4 1282.5 1782.4 2042.2 1642.7 1354 1472.2 1823.8 1797.3 TRUE FALSE FALSE 1863.198667 1673.41503 1351.835829 1855.093976 1891.550975 1611.368234 1406.224234 1639.789297 1748.622192 1786.60958 1.042868396 0.936642817 0.756648708 1.038332044 1.058737732 0.901914024 0.787090951 0.917821843 0.978737723 1 10.80300869 -4.220028192 0.284102731 1.024062175 0.717457825 0.103944329 0.093884418 9.909577069 0.58948988 0.051196372 1.064207472 6.03E-05 4.220028192 -0.30660435 SQIDVALSQDS(ph)TYQGER ddPTM_HeLa_CUDC101_4h_R1 2 SQIDVALSQDSTYQGER 17 0 Q92900-2;Q92900 Q92900-2 UPF1 Regulator of nonsense transcripts 1 1 0 SQIDVALS(0.138)QDS(0.858)T(0.004)YQGER;SQIDVALS(0.019)QDS(0.978)T(0.003)YQGER ; 256.84 5.94E-70 294730000 8091.6 6284.7 6581.9 6283.1 7674.4 6866.2 6180 4133.7 6418.6 6630.1 TRUE FALSE FALSE 7143.114914 6478.324158 6937.737423 6539.351976 7108.274802 6735.238675 6418.36467 4604.263699 6154.022591 6590.66387 1.083823277 0.98295472 1.052661395 0.992214457 1.078536994 1.021936304 0.97385708 0.698603933 0.933748513 1 12.68620808 -4.21972883 2.332821231 1.035774236 0.594095755 0.808109509 0.045820461 0.163570448 0.952505738 0.005268222 0.152279445 6.03E-05 4.21972883 -0.441678481 ALALDLGS(ph)PAALR ddPTM_HeLa_CUDC101_4h_R1 2 ALALDLGSPAALR 13 0 Q8TER5;Q8TER5-3;Q8TER5-2;Q8TER5-4 Q8TER5;Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 ALALDLGS(1)PAALR;ALALDLGS(1)PAALR ; 118.24 0.0024198 4459500 3320.7 3123.9 2830 2858.8 3285.1 2930.3 2399.9 1442.98 3327.3 3046.9 TRUE FALSE FALSE 2931.45258 3220.143656 2982.99836 2975.394221 3042.764718 2874.40941 2492.464947 1607.24301 3190.147286 3028.776903 0.96786679 1.063182849 0.984885469 0.982374838 1.004618305 0.949033059 0.822927877 0.530657444 1.053279059 1 11.5645196 -4.219514894 1.490082621 0.991881045 0.314043425 0.954446732 0.031768268 0.152541998 0.282785333 0.003844504 0.156447036 6.03E-05 4.219514894 -0.67783762 DTMSDQALEALSAS(ph)LGTR ddPTM_HeLa_CUDC101_4h_R1 1 DTMSDQALEALSASLGTR 18 0 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;F8W7E0;P20810-2;E9PCH5;P20810-3;H0Y7F0;E7EVY3;H0Y9H6 P20810-6;E7EVY3 CAST Calpastatin 1 0 DTMSDQALEALS(0.079)AS(0.897)LGT(0.024)R 131.31 6.42E-05 6786100 692.74 515.85 783.83 550.28 511.51 727 672.36 953.5 705.86 748.36 TRUE FALSE FALSE 611.5380673 531.7427271 826.2062208 572.7227969 473.7769264 713.1336863 698.2931504 1062.042586 676.764152 743.9087214 0.822060623 0.714795662 1.110628491 0.76988316 0.63687508 0.95863063 0.938681226 1.427651747 0.909740849 1 9.538981801 -4.219249454 2.850656506 0.886332293 1.557872868 0.608216159 0.133661395 0.289326285 2.947726141 0.019493677 0.468839026 6.04E-05 4.219249454 0.671540575 QIAS(ph)NSPGSSPK ddPTM_HeLa_CUDC101_4h_R1 1 QIASNSPGSSPK 12 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 QIAS(0.5)NS(0.5)PGSSPK 179.55 1.11E-07 32653000 8144.2 7275.2 7503.9 7188.1 7429.6 7104.3 6088.7 7415 7260.3 7205.4 TRUE FALSE FALSE 7189.549222 7499.340289 7909.583532 7481.261788 6881.53321 6968.797314 6323.543199 8259.093628 6961.027361 7162.54196 1.003770625 1.047022179 1.104298387 1.044498145 0.960766896 0.972950295 0.882862988 1.153095322 0.971865491 1 12.80625597 -4.219168985 23.24108287 1.003910068 1.153096521 0.397933617 0.056655329 9256.01474 5088866.675 0.007759711 3.682352522 6.04E-05 4.219168985 0.149186453 METEADAPS(ph)PAPS(ph)LGER ddPTM_HeLa_CUDC101_4h_R1 2 METEADAPSPAPSLGER 17 0 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 2 0 MET(0.281)EADAPS(0.719)PAPS(1)LGER;MET(0.002)EADAPS(0.998)PAPS(1)LGER ; 70.335 0.0021787 0 3491.1 1999.37 2972.3 2880.7 2878.9 3387.2 3244.8 3676.8 2590.1 3000 TRUE FALSE FALSE 3081.87855 2060.96822 3132.991529 2998.187397 2666.529283 3322.594803 3369.953023 4095.35205 2483.334982 2982.155867 1.033439796 0.691100101 1.050579403 1.005375819 0.894161607 1.114158666 1.130039198 1.373285714 0.832731451 1 11.54213995 -4.218994728 1.221451348 0.986983504 1.569991963 0.558134636 0.116285955 0.921056546 1.06158505 0.015526717 0.692826297 6.04E-05 4.218994728 0.58300846 GNIETTS(ph)EDGQVFSPK ddPTM_HeLa_CUDC101_4h_R1 3 GNIETTSEDGQVFSPK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 GNIET(0.004)T(0.229)S(0.762)EDGQVFS(0.006)PK;GNIET(0.013)T(0.041)S(0.945)EDGQVFSPK;GNIET(0.001)T(0.024)S(0.976)EDGQVFSPK ;; 195.89 3.21E-16 87943000 12468.4 12028.9 11622.3 11228.4 13841.3 11788.1 13851.6 18818.8 10620.9 11859.8 TRUE FALSE FALSE 11006.87305 12399.49615 12250.63669 11686.34269 12820.25487 11563.26163 14385.86085 20961.05612 10183.10201 11789.25738 0.933635826 1.051762274 1.03913557 0.991270468 1.087452285 0.980830366 1.220251657 1.777979345 0.863761107 1 13.52518522 -4.218741852 1.828702745 0.987842172 2.095539862 0.939113457 0.06041766 0.135330071 0.41606108 0.007433435 0.265462957 6.04E-05 4.218741852 1.10769769 T(ph)TSGDDACNLTSFRPATLTVTNFFK ddPTM_HeLa_CUDC101_4h_R1 1 TTSGDDACNLTSFRPATLTVTNFFK 25 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A1B0GUE9;Q96N67-7;A0A0U1RQT6 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 T(0.66)T(0.149)S(0.182)GDDACNLT(0.007)S(0.002)FRPATLTVTNFFK 89.055 2.70E-05 30415000 585.49 520.46 297.07 569.53 682.85 549.91 700.73 1751.6 590.66 474.31 TRUE FALSE FALSE 516.8597497 536.4947557 313.1305028 592.7578951 632.4775159 539.421383 727.7573908 1950.995064 566.3127448 471.488783 1.096229154 1.137873848 0.664131394 1.25720466 1.341447641 1.144081052 1.543530657 4.137945873 1.20111605 1 8.881079639 -4.217985158 2.495220149 1.066410511 5.027429554 0.962956774 0.177245509 0.076151705 0.530793786 0.024274116 0.666976061 6.05E-05 4.217985158 3.961019042 up EEEQEDLTKDMDEPS(ph)PVPNVEEVTLPK ddPTM_HeLa_CUDC101_4h_R1 1 EEEQEDLTKDMDEPSPVPNVEEVTLPK 27 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 EEEQEDLTKDMDEPS(1)PVPNVEEVTLPK 144.29 2.10E-11 36740000 4262.9 3848.6 3654.3 3389.3 4065.9 3915 3810.7 3928.7 4038.1 3852.8 TRUE FALSE FALSE 3763.209324 3967.170804 3851.862512 3527.530304 3765.966657 3840.327898 3957.679975 4375.927328 3871.647809 3829.883374 0.982591102 1.035846374 1.005738853 0.921054236 0.983311054 1.002727113 1.033368275 1.142574564 1.010904884 1 11.90308475 -4.217867239 1.794721742 0.990365813 1.204222373 0.724334398 0.027932883 0.383958853 1.123881482 0.003945033 0.143484548 6.06E-05 4.217867239 0.213856559 LQEDPNYS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 2 LQEDPNYSPQR 11 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710;P46379-4;H0Y4L1 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 0 LQEDPNYS(1)PQR;LQEDPNYS(1)PQR ; 166.45 2.92E-05 65576000 6459.9 4957.1 5378.1 4896 4736.3 4292.8 4305.7 3124.1 5033.1 6878.4 TRUE FALSE FALSE 5702.680315 5109.822375 5668.856354 5095.680042 4386.912585 4210.921992 4471.772291 3479.734916 4825.633488 6837.486971 0.834031617 0.747324623 0.829084776 0.745256271 0.641597213 0.615858138 0.654008163 0.508920153 0.70576127 1 12.73925046 -4.217539732 0.129288518 1.143147355 1.19E-17 0.432274026 0.09827657 5.297222723 0.113260282 0.193356087 1.097016153 6.06E-05 4.217539732 -1.143147355 DGVLTLANNVT(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 4 DGVLTLANNVTPAK 14 0 E7EVA0;P27816;P27816-6 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DGVLTLANNVT(1)PAK;DGVLTLANNVT(1)PAK;DGVLTLANNVT(1)PAK;DGVLTLANNVT(1)PAK ;;; 174.59 1.41E-06 50856000 13797.9 11608.9 10047.4 10056.2 10102.7 11325.7 8712.3 5082.14 12994.6 12647.9 TRUE FALSE FALSE 12180.53108 11966.55645 10590.59284 10466.3353 9357.443948 11109.68114 9048.336329 5660.670275 12458.95709 12572.66973 0.968810232 0.951791203 0.842350357 0.832467211 0.744268652 0.883637396 0.719682973 0.450236139 0.990955569 1 13.61800341 -3.678079933 0.353395909 0.996717797 6.00E-18 0.817405006 0.068232807 2.721139961 0.174170981 0.021614831 1.255132057 0.000209855 3.678079933 -0.996717797 down SADS(ph)ENALSVQER ddPTM_HeLa_CUDC101_4h_R1 1 SADSENALSVQER 13 0 J3KRN4;J3QRB6;Q99759;Q99759-2 J3KRN4 MAP3K3 Mitogen-activated protein kinase kinase kinase 3 1 0 S(0.08)ADS(0.919)ENALS(0.001)VQER 179.55 5.79E-08 11674000 891.64 709.71 880.5 849.06 994.46 811.55 893.88 675.12 1023.4 897.29 TRUE FALSE FALSE 787.1233108 731.5753239 928.1024934 883.6883368 921.100667 796.0710359 928.357251 751.9729319 981.2150188 891.9528792 0.882471854 0.820195036 1.040528614 0.990734328 1.032678619 0.892503466 1.040814232 0.843063518 1.10007495 1 9.800823686 -4.216298187 22.08832758 0.951891599 0.843061713 0.122552464 0.085884701 10454.1818 5114867.774 0.010497332 5.591338503 6.08E-05 4.216298187 -0.108829886 ATPELGSSENSASS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 2 ATPELGSSENSASSPPR 17 0 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 0 ATPELGSSENSAS(0.036)S(0.964)PPR;ATPELGS(0.001)S(0.005)ENS(0.106)AS(0.386)S(0.502)PPR ; 177.66 1.52E-07 54650000 7974.1 6656.6 7219.5 6913.6 8204.8 7361.1 6456.3 4361.3 7557.2 7728.6 TRUE FALSE FALSE 7039.388086 6861.681956 7609.808008 7195.566491 7599.54825 7220.699282 6705.321654 4857.772763 7245.689017 7682.629943 0.916273221 0.893142323 0.990521223 0.93660199 0.989185774 0.939873368 0.872789878 0.632305968 0.943126126 1 12.90738455 -4.215603539 1.920112966 0.956722502 0.50684787 0.897425462 0.032402104 0.23679272 0.819024241 0.005606183 0.196088798 6.09E-05 4.215603539 -0.449874632 SQS(ph)ADAPGPTER ddPTM_HeLa_CUDC101_4h_R1 1 SQSADAPGPTER 12 0 M0R1B8;M0R2U7;Q9NSC5-5;Q9NSC5-2;Q9NSC5 M0R1B8 HOMER3 Homer protein homolog 3 1 0 S(0.002)QS(0.998)ADAPGPTER 86.539 0.026017 6570600 1656 2550.4 1921.1 2668.6 2415 2396.4 2607.1 3792.6 2224.4 3028.2 TRUE FALSE FALSE 1461.88619 2628.974801 2024.960477 2777.437043 2236.850261 2350.692663 2707.65672 4224.334254 2132.70929 3010.188132 0.485646121 0.873358968 0.672702299 0.92267889 0.743093177 0.780912209 0.899497507 1.403345595 0.70849701 1 11.55563794 -4.214944126 2.174821662 0.766165476 1.622542215 0.66077708 0.135014429 0.49374804 2.357437357 0.026881028 0.852270683 6.10E-05 4.214944126 0.856376738 (ac)AHS(ph)PVQSGLPGMQNLK ddPTM_HeLa_CUDC101_4h_R1 8 AHSPVQSGLPGMQNLK 16 0 B4DR80;Q9Y6E0-2 B4DR80 STK24 1 0 AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(0.998)PVQS(0.002)GLPGMQNLK;AHS(0.99)PVQS(0.01)GLPGMQNLK;AHS(0.991)PVQS(0.009)GLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK ;;;;;;; 180.07 4.39E-103 272825000 15431.8 13430.08 11703.02 11859.03 14247.82 13974.95 13233.55 13183.47 13969.44 13480.7 TRUE FALSE FALSE 13622.9078 13843.84485 12335.72066 12342.6925 13196.7867 13708.40111 13743.97246 14684.22294 13393.61377 13400.5162 1.016595749 1.033082953 0.920540708 0.921060974 0.984796892 1.022975601 1.025630077 1.09579532 0.999484913 1 13.71000095 -4.214906727 1.500550542 0.996012266 1.141051699 0.43858499 0.037063148 1.118343644 2.092156648 0.005986688 0.247526989 6.10E-05 4.214906727 0.145039433 TVPST(ph)PTLVVPHR ddPTM_HeLa_CUDC101_4h_R1 3 TVPSTPTLVVPHR 13 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 TVPS(0.079)T(0.92)PT(0.002)LVVPHR;TVPS(0.035)T(0.965)PTLVVPHR;TVPS(0.03)T(0.962)PT(0.007)LVVPHR ;; 173.33 4.87E-07 93011000 15766.4 8873.1 9194.2 9972.3 11144.1 14649.1 15419.6 21324.3 10764 11659.3 TRUE FALSE FALSE 13918.28649 9146.469694 9691.266263 10379.0135 10322.02195 14369.69282 16014.33914 23751.77212 10320.30336 11589.94997 1.200892716 0.789172492 0.836178438 0.895518404 0.890601079 1.239840799 1.381743596 2.049342075 0.890452797 1 13.50058672 -4.214621847 1.421768741 1.02895645 2.540515399 0.84595643 0.142225023 0.465703043 0.764578192 0.024182578 1.029501765 6.10E-05 4.214621847 1.511558949 up SLS(ph)DFTGPPQLQALK ddPTM_HeLa_CUDC101_4h_R1 2 SLSDFTGPPQLQALK 15 0 O95425-3;O95425;O95425-4 O95425-3 SVIL Supervillin 1 0 S(0.034)LS(0.929)DFT(0.037)GPPQLQALK;S(0.001)LS(0.999)DFTGPPQLQALK ; 155.39 0.00010812 26465000 2372 2262.06 2054.5 1776.96 2303.66 2011.65 1818.44 1979.68 2255 1944.77 TRUE FALSE FALSE 2093.957756 2331.751387 2165.572485 1849.432109 2133.723591 1973.281128 1888.57784 2205.038769 2162.047946 1933.202422 1.083154941 1.206159977 1.120199551 0.956667594 1.10372487 1.020731769 0.976916757 1.140614529 1.11837639 1 10.91677699 -4.214239107 21.61950512 1.050957911 1.14061661 0.056973973 0.074250539 10558.49362 4835510.336 0.010343364 6.093282887 6.11E-05 4.214239107 0.089658699 ILELT(ph)PEPDRPR ddPTM_HeLa_CUDC101_4h_R1 5 ILELTPEPDRPR 12 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YF61 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR;ILELT(1)PEPDRPR ;;;; 133.88 0.0033966 587888000 22962.5 19928.1 18678 18372.4 18748.2 20785.4 19110.5 18918.6 20340.3 19184.4 TRUE FALSE FALSE 20270.87056 20542.06114 19687.78918 19121.70588 17365.18264 20388.95313 19847.59839 21072.21695 19501.86422 19070.29034 1.062955529 1.077176109 1.032380149 1.002696107 0.910588268 1.069147494 1.040760158 1.1049762 1.022630693 1 14.21903919 -4.213645604 1.774978586 1.025637005 1.13598157 0.234724935 0.045026023 1.355999358 3.828550719 0.006947705 0.260147123 6.11E-05 4.213645604 0.110344565 ELDFSS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 1 ELDFSSPGR 9 0 Q4AC94;Q4AC94-2;Q4AC94-4;Q4AC94-1;Q4AC94-3;H0YG44;H7C288;H7BZB4 Q4AC94 C2CD3 C2 domain-containing protein 3 1 0 ELDFS(0.091)S(0.909)PGR 104.42 0.013596 5150600 5500.7 4721.7 5032.7 5267.1 5375.8 4813.5 4209.1 2860.1 5266.4 4820.1 TRUE FALSE FALSE 4855.916285 4867.16998 5304.782985 5481.915104 4979.237944 4721.690507 4371.446397 3185.682223 5049.316763 4791.429831 1.013458708 1.015807421 1.107139867 1.144108397 1.039196674 0.985444987 0.912346951 0.664870891 1.053822542 1 12.22624053 -4.213102657 1.613897331 1.026761406 0.502487626 0.854880296 0.047718654 0.373426203 0.831767519 0.007923937 0.316629171 6.12E-05 4.213102657 -0.52427378 ENQECPRS(ph)LEEDLETLK ddPTM_HeLa_CUDC101_4h_R1 2 ENQECPRSLEEDLETLK 17 1 P48681 P48681 NES Nestin 1 0 ENQECPRS(1)LEEDLETLK;ENQECPRS(0.998)LEEDLET(0.002)LK ; 100.94 0.0016698 39855000 2460.13 2665.3 2434.23 2379.24 3346.7 2765.7 3192.1 4927.6 2959.6 3264.9 TRUE FALSE FALSE 2171.757291 2747.414734 2565.831837 2476.275691 3099.820609 2712.94888 3315.220366 5488.538066 2837.604035 3245.48023 0.669163617 0.846535656 0.790586186 0.762992074 0.955119239 0.835916009 1.021488387 1.691132799 0.874324856 1 11.66421625 -4.212862808 2.147675331 0.837862951 1.992307431 0.891851719 0.08856859 0.249396081 1.146582425 0.017757414 0.576243926 6.13E-05 4.212862808 1.15444448 MET(ph)EADAPSPAPS(ph)LGER ddPTM_HeLa_CUDC101_4h_R1 1 METEADAPSPAPSLGER 17 0 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 2 0 MET(0.949)EADAPS(0.051)PAPS(1)LGER 134.83 0.00086346 4766800 2826.9 1806 1825.9 1926.2 2372.6 2594.8 2414.6 2737.7 1969.3 2184.3 TRUE FALSE FALSE 2495.535067 1861.640719 1924.613677 2004.758762 2197.578025 2545.308513 2507.731931 3049.348702 1888.12462 2171.307686 1.149323554 0.857382273 0.886384592 0.923295567 1.012098856 1.172246812 1.154940843 1.404383506 0.869579485 1 11.08434846 -4.212150154 1.171886868 1.029203489 1.596050961 0.591007455 0.106501261 1.120519417 1.160809077 0.017156645 0.794865054 6.14E-05 4.212150154 0.566847472 AMLDSGIYPPGS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 5 AMLDSGIYPPGSPGK 15 0 O95295 O95295 SNAPIN SNARE-associated protein Snapin 1 0 AMLDS(0.016)GIYPPGS(0.983)PGK;AMLDS(0.001)GIY(0.003)PPGS(0.996)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK ;;;; 160.03 6.61E-05 328739800 36019.7 32810.8 31066.7 29921.1 33347.5 28974.9 26533.4 28362.2 35367.2 35793.6 TRUE FALSE FALSE 31797.52537 33821.66186 32746.25977 31141.41179 30887.52136 28422.25206 27556.80213 31590.8382 33909.34905 35580.69808 0.893673455 0.950562066 0.920337755 0.8752333 0.868097677 0.798810973 0.774487394 0.887864486 0.953026525 1 15.1188072 -4.211534436 0.029110489 1.643688404 5.14E-09 0.619169466 0.040460373 261.1057996 1.187082812 27.01964024 41.19310189 6.14E-05 4.211534436 -1.643688399 NYQQNYQNS(ph)ESGEKNEGSESAPEGQAQQR ddPTM_HeLa_CUDC101_4h_R1 5 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 H0Y449;P67809;C9J5V9 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NYQQNY(0.084)QNS(0.524)ES(0.132)GEKNEGS(0.188)ES(0.071)APEGQAQQR;NYQQNY(0.016)QNS(0.798)ES(0.186)GEKNEGSESAPEGQAQQR;NYQQNY(0.006)QNS(0.689)ES(0.184)GEKNEGS(0.049)ES(0.071)APEGQAQQR;NYQQNY(0.015)QNS(0.468)ES(0.468)GEKNEGS(0.035)ES(0.014)APEGQAQQR;NYQQNY(0.042)QNS(0.574)ES(0.338)GEKNEGS(0.034)ES(0.011)APEGQAQQR ;;;; 94.295 6.55E-09 1372740200 4400.77 3948.24 3915.35 3700.41 4283.66 4460.98 4516.94 5567.67 4692.37 4800.56 TRUE FALSE FALSE 3884.918412 4069.880595 4127.025664 3851.328714 3967.662936 4375.894239 4691.159889 6201.471048 4498.948523 4772.006056 0.814105927 0.852865765 0.864840827 0.807067022 0.831445495 0.9169926 0.983058243 1.299552217 0.942779299 1 12.22038016 -4.211290506 2.029403071 0.889473436 1.452920049 0.827169317 0.05776282 0.36241983 1.432328726 0.011454465 0.392884516 6.15E-05 4.211290506 0.563446613 KSYESSEDCSEAAGS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 5 KSYESSEDCSEAAGSPAR 18 1 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 KSYESSEDCSEAAGS(1)PAR;KSYESSEDCSEAAGS(1)PAR;KSYESSEDCS(0.007)EAAGS(0.993)PAR;KSYESSEDCS(0.001)EAAGS(0.999)PAR;KSYESSEDCS(0.082)EAAGS(0.918)PAR ;;;; 117.02 8.43E-05 277691000 19541.2 16664.8 18231.66 16075.41 20629.2 17213.81 15917.84 12143.29 18520.9 17141.03 TRUE FALSE FALSE 17250.61016 17178.22274 19217.31869 16731.0347 19107.42502 16885.48525 16531.79642 13525.63305 17757.46066 17039.07439 1.012414745 1.008166426 1.127838182 0.981921572 1.121388673 0.990986063 0.970228549 0.793800927 1.042161109 1 14.05655935 -4.210587842 2.011185451 1.020671654 0.708416769 0.674595727 0.049942035 0.394884984 1.522377021 0.006799488 0.235824066 6.16E-05 4.210587842 -0.312254885 T(ph)ASEGDGGAAAGAAAAGAR ddPTM_HeLa_CUDC101_4h_R1 2 TASEGDGGAAAGAAAAGAR 19 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 T(0.722)AS(0.278)EGDGGAAAGAAAAGAR;T(0.599)AS(0.401)EGDGGAAAGAAAAGAR ; 157.37 4.43E-09 7320400 2949.6 2557.5 3098 2846.1 2976 2770.6 2985.5 2267.43 2762.6 2995.7 TRUE FALSE FALSE 2603.852359 2636.293544 3265.487251 2962.17626 2756.466409 2717.755421 3100.651735 2525.545066 2648.724459 2977.881443 0.874397591 0.885291639 1.096580678 0.994726055 0.925646793 0.912647287 1.041227394 0.848101281 0.889466055 1 11.5400706 -4.210520635 21.93575866 0.952040137 0.848098792 0.17506759 0.070438783 14277.08738 6149750.853 0.010280339 9.274335367 6.16E-05 4.210520635 -0.103941345 SS(ph)DGS(ph)LSHEEDLAK ddPTM_HeLa_CUDC101_4h_R1 2 SSDGSLSHEEDLAK 14 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YEF9;E9PJZ7 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 2 0 S(0.421)S(0.579)DGS(0.5)LS(0.5)HEEDLAK;S(0.434)S(0.574)DGS(0.984)LS(0.008)HEEDLAK ; 120.92 0.00043893 2272100 5788.9 4481.7 4551.6 4550.9 5840.4 4796 4335.4 2902.6 5513.2 4686.2 TRUE FALSE FALSE 5110.333917 4619.775865 4797.673264 4736.505373 5409.565328 4704.524291 4502.61783 3233.020251 5285.943562 4658.326274 1.097032199 0.991724408 1.029913532 1.016782658 1.16126802 1.009917299 0.966574165 0.694030444 1.134730212 1 12.18559598 -4.209885784 2.010033901 1.046184979 0.560608968 0.792154287 0.055577486 0.280188814 1.076970565 0.007470705 0.260254564 6.17E-05 4.209885784 -0.485576011 QNSTS(ph)LTGKPGALPANLDDMK ddPTM_HeLa_CUDC101_4h_R1 1 QNSTSLTGKPGALPANLDDMK 21 1 A0A087WU73;W0Z7M9;B0QY83;A0A499FIJ6;Q969V6;E7ER32;A0A087X287;A0A494BZX7 A0A087WU73 MKL1;mkl1 MKL/myocardin-like protein 1 1 0 QNS(0.383)T(0.079)S(0.46)LT(0.079)GKPGALPANLDDMK 58.877 0.011348 21891000 1385.8 1180 1235.5 1204.5 1005.6 1175.9 1270.3 2231.6 981.24 861.74 TRUE FALSE FALSE 1223.358625 1216.354401 1302.294867 1253.624716 931.4188914 1153.471667 1319.295897 2485.636324 940.7928719 856.6143322 1.428132333 1.419955697 1.520281436 1.46346456 1.087325832 1.346547242 1.540128208 2.901698268 1.09826889 1 9.742502005 -4.209120323 2.332763797 1.262234904 3.440950772 0.88642055 0.171220821 0.202778138 1.151241349 0.030353541 0.940752103 6.18E-05 4.209120323 2.178715868 up IST(ph)PQTNTVPIKPLISTPPVSSQPK ddPTM_HeLa_CUDC101_4h_R1 1 ISTPQTNTVPIKPLISTPPVSSQPK 25 1 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 0 IS(0.198)T(0.766)PQT(0.029)NT(0.006)VPIKPLISTPPVSSQPK 84.169 4.50E-05 17210000 891.59 610.9 798.81 825.92 789.12 923.79 1002.1 1150.1 792.61 756.57 TRUE FALSE FALSE 787.0791718 629.7211049 841.9960849 859.6045875 730.9081897 906.1702449 1040.751333 1281.022735 759.9382803 752.069888 1.046550572 0.837317269 1.119571596 1.142984982 0.971862059 1.204901645 1.383849226 1.703329379 1.010462315 1 9.554722924 -4.208992154 0.953964317 1.016703524 2.137266495 0.879737033 0.08106256 0.498336765 0.320543815 0.012102653 0.588245123 6.18E-05 4.208992154 1.120562971 QGS(ph)PVAAGAPAK ddPTM_HeLa_CUDC101_4h_R1 2 QGSPVAAGAPAK 12 0 Q9NZI8 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 1 0 QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK ; 141.06 0.0012155 909270000 12815.9 9715.3 10465.9 10653.4 10638.3 9005 9144 9753.8 9445 9112.1 TRUE FALSE FALSE 11313.63963 10014.61688 11031.71821 11087.8917 9853.533803 8833.244628 9496.687143 10864.13317 9055.673102 9057.900824 1.249035494 1.105622271 1.217911128 1.224112729 1.087838562 0.975197764 1.048442385 1.199409596 0.999754058 1 13.14496103 -4.208818996 20.76218637 1.117844946 1.199412892 0.062271388 0.096210522 14463.09765 5705237.98 0.015586477 12.94014991 6.18E-05 4.208818996 0.081567946 DSGPLPT(ph)PPGVSLLGEPPKDYR ddPTM_HeLa_CUDC101_4h_R1 2 DSGPLPTPPGVSLLGEPPKDYR 22 1 A0A087WZ13;Q8IY67-2;E9PAU2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 DS(0.069)GPLPT(0.926)PPGVS(0.005)LLGEPPKDYR;DS(0.133)GPLPT(0.866)PPGVS(0.001)LLGEPPKDYR ; 86.039 0.00078745 33417400 4393 4089 3355.1 3575.2 4235.1 3982.3 3347 2331.3 4902.9 4105.1 TRUE FALSE FALSE 3878.059199 4214.977243 3536.486855 3721.012109 3922.685111 3906.344262 3476.094911 2596.685769 4700.800387 4080.682683 0.95034569 1.032909827 0.866640984 0.911860196 0.961281583 0.957277144 0.851841513 0.636336116 1.151964206 1 11.99459481 -4.208439537 1.583701456 0.966874638 0.480235392 0.674490426 0.072962383 0.35308203 0.744589663 0.006655311 0.274740009 6.19E-05 4.208439537 -0.486639247 GEGDIHENVDTDLPGSLGQS(ph)EEKPVPAAPVPSPVAPAPVPSR ddPTM_HeLa_CUDC101_4h_R1 1 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSR 42 1 Q9UK76-3;Q9UK76 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GEGDIHENVDTDLPGS(0.435)LGQS(0.564)EEKPVPAAPVPSPVAPAPVPSR 103.3 5.19E-17 32232000 418.4 354.95 494.24 345.33 242.31 505.1 740 1946.4 423.07 471.02 TRUE FALSE FALSE 369.3557863 365.8855888 520.9601094 359.41405 224.435274 495.4660591 768.5420479 2167.970308 405.6308755 468.2183521 0.788853715 0.781442221 1.112643507 0.767620595 0.479338909 1.058194445 1.641418036 4.630254877 0.866328442 1 8.871037673 -4.20813843 2.141355294 0.871445463 5.988333592 0.978306262 0.168348908 0.082630916 0.372957173 0.02533532 0.848091038 6.19E-05 4.20813843 5.116888129 up TDS(ph)REDEIS(ph)PPPPNPVVK ddPTM_HeLa_CUDC101_4h_R1 1 TDSREDEISPPPPNPVVK 18 1 P10644;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EPB2;P10644-2;K7EMU2;K7EMZ6 P10644 PRKAR1A "cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed" 2 0 T(0.159)DS(0.841)REDEIS(1)PPPPNPVVK 86.825 0.0071861 24577000 2504.2 2446.6 2026 2292.3 2245.3 2405.9 2314.7 2495.3 1899.3 2388.6 TRUE FALSE FALSE 2210.661472 2521.976846 2135.531688 2385.789902 2079.668692 2360.011466 2403.978754 2779.354866 1821.01005 2374.392501 0.931042981 1.062156676 0.899401294 1.004800134 0.875874015 0.993943278 1.012460557 1.170554095 0.766937248 1 11.21334273 -4.207608818 1.972815614 0.966146028 1.249959321 0.398882239 0.08123043 0.464705429 1.69410104 0.006965697 0.249340139 6.20E-05 4.207608818 0.283813293 SLDSESIS(ph)PGDFHR ddPTM_HeLa_CUDC101_4h_R1 3 SLDSESISPGDFHR 14 0 Q52LW3;F8VWZ8 Q52LW3 ARHGAP29 Rho GTPase-activating protein 29 1 0 SLDSES(0.03)IS(0.97)PGDFHR;SLDSES(0.002)IS(0.998)PGDFHR;SLDSESIS(1)PGDFHR ;; 133.9 0.00045821 19313900 18687.1 15911.8 14227.3 14544.4 16851.9 15261.2 14183.1 12125.6 16416.8 13716.7 TRUE FALSE FALSE 16496.62647 16402.0237 14996.47087 15137.5835 15608.76891 14970.11804 14730.14692 13505.92929 15740.09256 13635.11246 1.209863616 1.202925443 1.099842111 1.11019132 1.144748088 1.097909393 1.080309896 0.990525698 1.154379372 1 13.73503898 -4.207463827 1.804127286 1.112743058 0.939145241 0.32331188 0.057747725 1.484546952 4.313310987 0.011931444 0.455819485 6.20E-05 4.207463827 -0.173597816 VPPELLGGS(ph)PPWK ddPTM_HeLa_CUDC101_4h_R1 2 VPPELLGGSPPWK 13 0 E7EVA0 E7EVA0 MAP4 Microtubule-associated protein 1 0 VPPELLGGS(1)PPWK;VPPELLGGS(1)PPWK ; 127.18 0.0014581 524930000 10226.5 11077.2 10508.1 10496.3 11300.8 10471.9 9740.4 8073.8 10811.4 11166.4 TRUE FALSE FALSE 9027.765172 11418.4754 11076.19967 10924.38448 10467.1625 10272.16595 10116.09049 8992.888757 10365.74952 11099.98176 0.813313514 1.028693168 0.997857466 0.9841804 0.942989162 0.925421877 0.911361002 0.81017149 0.933852843 1 13.43826968 -4.20724637 2.287273442 0.932728362 0.76860601 0.305809256 0.059195837 1.054299036 5.652577872 0.01141213 0.364052878 6.21E-05 4.20724637 -0.164122352 S(ph)PPEEPPDFCCPK ddPTM_HeLa_CUDC101_4h_R1 2 SPPEEPPDFCCPK 13 0 A0A087X0G7;A0A087WUW6;A0A087X1B1;Q9Y6K9-3;Q9Y6K9;Q9Y6K9-2 A0A087X0G7 IKBKG NF-kappa-B essential modulator 1 0 S(1)PPEEPPDFCCPK;S(1)PPEEPPDFCCPK ; 122.46 0.0019607 39644000 4748.7 4055.1 4489 3834.2 4577 4303.7 4499.8 5607.5 4843.1 4092.19 TRUE FALSE FALSE 4192.064585 4180.032825 4731.688918 3990.575249 4239.363829 4221.614093 4673.358793 6245.835134 4643.465368 4067.849472 1.030535818 1.027578049 1.163191743 0.981003667 1.042163398 1.037799978 1.14885244 1.535414517 1.141503736 1 11.99005058 -4.206709688 1.983214471 1.026383508 1.735193857 0.852203621 0.059304612 0.177011351 0.652800631 0.006650018 0.238303022 6.21E-05 4.206709688 0.708810349 S(ph)PSSKPSLAVAVDSAPEVAVKEDLETGVHLDPAVK ddPTM_HeLa_CUDC101_4h_R1 3 SPSSKPSLAVAVDSAPEVAVKEDLETGVHLDPAVK 35 2 Q5SRN1;O60508 Q5SRN1 CDC40 Pre-mRNA-processing factor 17 1 0 S(0.463)PS(0.131)S(0.131)KPS(0.274)LAVAVDSAPEVAVKEDLETGVHLDPAVK;S(0.268)PS(0.244)S(0.244)KPS(0.244)LAVAVDS(0.001)APEVAVKEDLETGVHLDPAVK;S(0.271)PS(0.243)S(0.243)KPS(0.243)LAVAVDS(0.001)APEVAVKEDLETGVHLDPAVK ;; 93.955 1.25E-12 148591000 5593.1 5152.27 5061.39 5006.33 5845.7 4986.98 4584.51 3206.23 5092.4 4889.46 TRUE FALSE FALSE 4937.485297 5311.005332 5335.024053 5210.509777 5414.474357 4891.861665 4761.336086 3571.214263 4882.489117 4860.377274 1.015864617 1.092714625 1.097656365 1.072038133 1.114002896 1.006477767 0.979622737 0.734760711 1.004549409 1 12.24685259 -4.206447599 2.252304129 1.032344494 0.631930552 0.822221199 0.043413456 0.284416183 1.460850334 0.007303892 0.237190998 6.22E-05 4.206447599 -0.400413942 ETNLDS(ph)LPLVDTHSK ddPTM_HeLa_CUDC101_4h_R1 4 ETNLDSLPLVDTHSK 15 0 P08670 P08670 VIM Vimentin 1 0 ET(0.002)NLDS(0.998)LPLVDTHSK;ET(0.015)NLDS(0.985)LPLVDTHSK;ET(0.006)NLDS(0.994)LPLVDTHSK;ET(0.002)NLDS(0.998)LPLVDTHSK ;;; 148.85 0.00015834 921195800 15057.8 11386.6 11762 11804.2 13735.2 14353.4 15992.7 25503.2 12150.4 14623.9 TRUE FALSE FALSE 13292.74751 11737.40765 12397.8893 12285.6263 12721.98166 14079.63281 16609.5438 28406.3812 11649.55537 14536.91639 0.91441315 0.80742073 0.852855514 0.845132899 0.87514995 0.968543289 1.142576826 1.954085752 0.801377339 1 13.82743365 -4.206180316 2.105722791 0.925675598 2.335833104 0.952528551 0.071405742 0.133903372 0.575898108 0.010919851 0.374858824 6.22E-05 4.206180316 1.410157506 (ac)S(ph)DNDDIEVES(ph)DEEQPR ddPTM_HeLa_CUDC101_4h_R1 2 SDNDDIEVESDEEQPR 16 0 G3V5L1;P61244-6;P61244-5;P61244-3;P61244-4;P61244 G3V5L1 MAX Protein max 2 0 S(1)DNDDIEVES(1)DEEQPR;S(1)DNDDIEVES(1)DEEQPR ; 154.49 1.08E-43 0 352.33 259.85 231.51 470.38 421.66 450.47 504.6 597.57 527.39 479.671 TRUE FALSE FALSE 311.0304115 267.8556705 244.0261309 489.5641296 390.5549819 441.8780353 524.062591 665.5949533 505.650761 476.8178956 0.6523044 0.561756748 0.511780563 1.02673187 0.81908625 0.926722842 1.09908331 1.395910178 1.060469344 1 8.897294573 -4.206113479 0.994161735 0.79541841 1.764262101 0.525323192 0.17844397 1.382536496 0.973279275 0.029975718 1.463619191 6.22E-05 4.206113479 0.968843691 TRPGS(ph)FQSLSDALSDTPAK ddPTM_HeLa_CUDC101_4h_R1 1 TRPGSFQSLSDALSDTPAK 19 1 G3V4K3;Q9H9C1-2;Q9H9C1 G3V4K3 VIPAS39 Spermatogenesis-defective protein 39 homolog 1 0 T(0.007)RPGS(0.956)FQS(0.018)LS(0.018)DALS(0.001)DTPAK 109.42 0.0016825 17455000 1975.9 1433.6 1483.3 1348 1608.5 1775.5 1855.5 2526.7 1735.1 1707.8 TRUE FALSE FALSE 1744.287997 1477.767517 1563.491685 1402.977267 1489.84416 1741.635296 1927.067257 2814.329315 1663.578444 1697.64193 1.027476977 0.870482456 0.92097848 0.826427082 0.877596231 1.025914396 1.135143532 1.657787349 0.979934823 1 10.72931648 -4.205763116 1.958823157 0.97342532 1.92913995 0.902822233 0.070437615 0.244958887 0.873438422 0.012127999 0.440965013 6.23E-05 4.205763116 0.955714629 RGFS(ph)DSGGGPPAK ddPTM_HeLa_CUDC101_4h_R1 2 RGFSDSGGGPPAK 13 1 Q9H307;G3V5F0;G3V579 Q9H307 PNN Pinin 1 0 RGFS(0.999)DS(0.001)GGGPPAK;RGFS(0.62)DS(0.38)GGGPPAK ; 127.29 0.00077111 151793000 3257.5 3241.5 3071.8 2906.1 3917.5 3965.3 5306.4 14634.2 3690.3 3874 TRUE FALSE FALSE 2875.660788 3341.366773 3237.8708 3024.623319 3628.51383 3889.668509 5511.069626 16300.09817 3538.184272 3850.957276 0.746739209 0.867671733 0.840796344 0.785421157 0.942236844 1.010052366 1.431090825 4.232739292 0.918780453 1 11.9110014 -4.205330598 2.337163241 0.877188071 5.358689759 0.992977077 0.083924991 0.052297504 0.295652808 0.015800176 0.501563014 6.23E-05 4.205330598 4.481501688 up TAQALSS(ph)GSGSQETKIPISLVLR ddPTM_HeLa_CUDC101_4h_R1 1 TAQALSSGSGSQETKIPISLVLR 23 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 T(0.001)AQALS(0.203)S(0.775)GS(0.005)GS(0.017)QETKIPISLVLR 96.55 6.92E-05 47369000 720.31 937.94 879.02 979.8 1150 1036.6 1240.8 3596.6 921.41 929.47 TRUE FALSE FALSE 635.8763537 966.8368197 926.5424801 1019.760479 1065.166791 1016.828582 1288.658072 4006.022406 883.4290898 923.9414711 0.688221466 1.046426478 1.002815123 1.103706794 1.152850937 1.100533544 1.39473994 4.335796727 0.956152654 1 9.851657654 -4.205304292 2.48471 0.92591057 5.405213053 0.979345231 0.143711179 0.080670564 0.538080809 0.026716621 0.806871271 6.23E-05 4.205304292 4.479302483 up ASPEAAS(ph)TPRDPIDVDLPEEAER ddPTM_HeLa_CUDC101_4h_R1 2 ASPEAASTPRDPIDVDLPEEAER 23 1 P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-4;H3BVD2;H3BT29;P29590-2 P29590;P29590-2 PML Protein PML 1 0 ASPEAAS(0.882)T(0.118)PRDPIDVDLPEEAER;ASPEAAS(0.865)T(0.135)PRDPIDVDLPEEAER ; 116.98 9.64E-07 17799300 1335.23 1037.13 1067.95 1060.27 1176.14 1157.65 1169.31 1415.81 1432.47 1075.99 TRUE FALSE FALSE 1178.716363 1069.082746 1125.686607 1103.512393 1089.378495 1135.569755 1214.410678 1576.980087 1373.42298 1069.589964 1.102026387 0.999525783 1.052446868 1.031715359 1.018501045 1.061686996 1.135398349 1.474378165 1.284064947 1 10.06284212 -4.203493988 2.075694109 1.042985885 1.638917493 0.680365743 0.081512854 0.168549982 0.694156339 0.005607945 0.19781115 6.26E-05 4.203493988 0.595931608 LQQQAALS(ph)PTTAPAVSSVSK ddPTM_HeLa_CUDC101_4h_R1 1 LQQQAALSPTTAPAVSSVSK 20 0 A0A0U1RRM1;Q8WXI9;A0A0U1RR30 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LQQQAALS(0.582)PT(0.149)T(0.268)APAVSSVSK 197.86 2.56E-17 21366000 2462.2 2022.3 2103.8 1741.5 2232.4 2002.1 1755.7 1009.2 2159 2329.2 TRUE FALSE FALSE 2173.584648 2084.604666 2217.537792 1812.525897 2067.7203 1963.913278 1823.417937 1124.083249 2070.005106 2315.345815 0.938773221 0.900342684 0.957756624 0.782831612 0.893050311 0.848215962 0.787535894 0.485492595 0.894037121 1 11.17701197 -3.674565415 0.519690189 0.965123862 2.63E-37 0.776971313 0.065025646 2.066806958 0.244158452 0.012209165 1.388415969 0.000211561 3.674565415 -0.965123862 down KDSGSSSVSSTSSSS(ph)SSSPGDK ddPTM_HeLa_CUDC101_4h_R1 1 KDSGSSSVSSTSSSSSSSPGDK 22 1 Q9H7S9 Q9H7S9 ZNF703 Zinc finger protein 703 1 0 KDSGSSSVSSTSSS(0.01)S(0.312)S(0.312)S(0.312)S(0.054)PGDK 178.79 1.71E-10 18204000 3285.2 2544.3 2948.7 3007.9 3390.6 2531.4 2392.9 1508.4 3035.6 3074.8 TRUE FALSE FALSE 2900.113836 2622.686867 3108.115641 3130.575163 3140.482193 2483.117763 2485.194955 1680.110159 2910.471283 3056.510953 0.948831488 0.858065588 1.016883528 1.024231619 1.027472907 0.812402704 0.8130823 0.549682362 0.952220139 1 11.57767002 -4.203469993 1.086910265 0.975008541 0.313298528 0.824157445 0.059327375 0.563767215 0.484971097 0.009062078 0.440261463 6.26E-05 4.203469993 -0.661710013 VTSSITIYPSDSSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 VTSSITIYPSDSSSPR 16 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 VTSSITIYPSDS(0.013)S(0.084)S(0.903)PR 233.48 3.43E-43 22418000 2982.6 2735.9 2565.2 2509.3 3213.3 2533.7 2214.3 1263.2 2662.3 2641.5 TRUE FALSE FALSE 2632.984149 2820.189836 2703.882471 2611.6401 2976.261261 2485.373894 2299.706293 1406.997582 2552.558867 2625.788241 1.002740476 1.074035519 1.029741252 0.99461185 1.133473452 0.946524878 0.875815596 0.535838176 0.97211147 1 11.35853486 -4.203194937 1.663118029 1.015915381 0.317329173 0.904061518 0.047963719 0.231916269 0.546019896 0.00657054 0.270124289 6.26E-05 4.203194937 -0.698586208 HKS(ph)DNETNLQQQVVWGNR ddPTM_HeLa_CUDC101_4h_R1 2 HKSDNETNLQQQVVWGNR 18 1 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 HKS(1)DNETNLQQQVVWGNR;HKS(0.997)DNET(0.003)NLQQQVVWGNR ; 122.83 4.75E-05 56167000 2595.1 1978.2 1732.96 2600 2602.3 2226.02 2034.44 1392.61 1822.14 2243.15 TRUE FALSE FALSE 2290.906312 2039.145997 1826.64906 2706.039238 2410.333514 2183.562377 2112.909032 1551.139093 1747.030618 2229.807644 1.027400869 0.914494128 0.819195801 1.213575191 1.080960288 0.979260423 0.947574576 0.695638073 0.783489384 1 11.12270355 -4.203173785 2.115381197 1.009816732 0.578282959 0.301151473 0.120166103 0.544162392 2.35230927 0.013463638 0.469000335 6.26E-05 4.203173785 -0.431533774 AVSTVVVTT(ph)APSPK ddPTM_HeLa_CUDC101_4h_R1 1 AVSTVVVTTAPSPK 14 0 Q6P4R8-3;Q6P4R8;Q6P4R8-2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 0 AVST(0.117)VVVT(0.001)T(0.865)APS(0.017)PK 272.77 3.02E-85 63473000 3201 3323.2 2518 2982.5 3310 3468.9 3327 3591.8 2856 3391.9 TRUE FALSE FALSE 2825.783632 3425.583853 2654.130697 3104.139241 3065.827894 3402.736512 3455.323504 4000.675993 2738.274471 3371.724828 0.838082518 1.015973731 0.787172985 0.920638368 0.909275831 1.009197573 1.024794039 1.18653692 0.812128691 1 11.71927109 -4.202978674 1.067187241 0.91769923 1.338304197 0.591899065 0.07352531 1.148562527 0.946791312 0.011501126 0.561498714 6.27E-05 4.202978674 0.420604967 AGDPGEMPQSPT(ph)GLGQPK ddPTM_HeLa_CUDC101_4h_R1 2 AGDPGEMPQSPTGLGQPK 18 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9;H0YHL2 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 AGDPGEMPQS(0.129)PT(0.871)GLGQPK;AGDPGEMPQS(0.182)PT(0.818)GLGQPK ; 173.72 9.76E-07 37303000 6441.3 5906.5 6302 5827.2 6156.7 5844.2 4708.1 3032.7 6357.2 6118.3 TRUE FALSE FALSE 5686.260578 6088.472264 6642.705183 6064.858403 5702.532507 5732.731622 4889.692994 3377.930309 6095.153525 6081.908079 0.934946813 1.001079297 1.092207428 0.997196657 0.937622278 0.942587679 0.803973511 0.55540634 1.002177844 1 12.5703083 -4.200782455 1.305658221 0.981653658 0.321706765 0.914512813 0.0415887 0.362435814 0.475394046 0.007057302 0.329291148 6.30E-05 4.200782455 -0.659946893 GFS(ph)DSGGGPPAK ddPTM_HeLa_CUDC101_4h_R1 2 GFSDSGGGPPAK 12 0 Q9H307;G3V5F0;G3V579 Q9H307 PNN Pinin 1 0 GFS(0.983)DS(0.017)GGGPPAK;GFS(0.987)DS(0.013)GGGPPAK ; 136.27 0.001366 62577000 3275.12 2588.82 2799.64 2687.52 2752.04 3906.5 5408.3 15610.7 2921.32 3632.05 TRUE FALSE FALSE 2891.215398 2668.578476 2950.997007 2797.128682 2549.027492 3831.990021 5616.899943 17387.75899 2800.901953 3610.446405 0.800791668 0.739127015 0.817349623 0.774732088 0.706014494 1.061361835 1.555735583 4.815958205 0.775777186 1 11.81796151 -4.200359882 2.252889468 0.868226584 6.229138926 0.991285368 0.111532885 0.055923421 0.283254967 0.018592877 0.628145219 6.30E-05 4.200359882 5.360912343 up S(ph)QEMVHLVNK ddPTM_HeLa_CUDC101_4h_R1 2 SQEMVHLVNK 10 0 H0YE40;H0Y2P0;H0YD13;P16070-8;P16070-5;P16070-7;P16070-3;P16070-6;P16070-4;P16070-17;P16070-16;P16070-10;P16070-11;P16070-13;P16070-14;P16070-12;P16070-18;P16070 H0YE40 CD44 CD44 antigen 1 0 S(1)QEMVHLVNK;S(1)QEMVHLVNK ; 128.54 0.0027448 38432000 5405.4 3910.4 3267.2 4211.6 2966.3 3611.5 2963.9 1986.52 3096.6 3256 TRUE FALSE FALSE 4771.787206 4030.874789 3443.834715 4383.367252 2747.481959 3542.616655 3078.218616 2212.657407 2968.956837 3236.633167 1.474305848 1.2453913 1.064017619 1.354298441 0.848870359 1.094537586 0.95105576 0.683629343 0.917297909 1 11.66027815 -4.200008323 0.642112199 1.223399483 0.355465232 0.329434656 0.185976331 2.670919148 0.713916019 0.036237497 1.727679818 6.31E-05 4.200008323 -0.867934251 (ac)AS(ph)GVQVADEVCR ddPTM_HeLa_CUDC101_4h_R1 4 ASGVQVADEVCR 12 0 P60981;F6RFD5 P60981 DSTN Destrin 1 0 AS(1)GVQVADEVCR;AS(1)GVQVADEVCR;AS(1)GVQVADEVCR;AS(1)GVQVADEVCR ;;; 114.5 0.00018952 363841000 988.21 662.17 949.19 941.1 833.03 724.87 634.3 361.38 575.86 680.182 TRUE FALSE FALSE 872.3735218 682.5706728 1000.506083 979.4821258 771.5790365 711.0443125 658.7651635 402.5180385 552.1228071 676.1362472 1.29023333 1.009516463 1.479740343 1.448646083 1.141159108 1.051628744 0.974308309 0.595320899 0.816585133 1 9.401170181 -4.199802013 1.335100189 1.177998228 0.291647618 0.441524985 0.193620194 1.00218532 1.383212846 0.026823596 1.246136925 6.31E-05 4.199802013 -0.88635061 Y(ph)HIIVQLGNMS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 YHIIVQLGNMSK 12 0 E9PKB0;E9PS32;E9PP43;E9PPB3;Q92673 E9PKB0 SORL1 Sortilin-related receptor 2 0 Y(1)HIIVQLGNMS(1)K 87.639 0.0010547 0 1190.1 1123.3 1119.9 833.63 1216.7 1106 1130.4 1385.9 987.49 1097.3 TRUE FALSE FALSE 1050.598282 1157.907542 1180.445182 867.6290347 1126.946465 1084.904893 1173.999907 1543.665254 946.7852442 1090.773211 0.963168394 1.061547469 1.082209546 0.795425691 1.033162947 0.994620038 1.076300642 1.415202756 0.867994588 1 10.09113546 -4.199745605 2.081283905 0.985371009 1.582060362 0.718472726 0.082563559 0.299894893 1.233229651 0.009840568 0.354287759 6.31E-05 4.199745605 0.596689353 TSSLT(ph)QFPPSQSEER ddPTM_HeLa_CUDC101_4h_R1 1 TSSLTQFPPSQSEER 15 0 B7Z7F3;Q9H6Z4-3;Q9H6Z4-2;Q9H6Z4 B7Z7F3 RANBP3 Ran-binding protein 3 1 0 TSS(0.083)LT(0.917)QFPPSQSEER 236.03 1.27E-42 14000000 2953.6 2527.9 2552.6 2500.1 3438.8 3621.9 3480.7 4187.1 2820.2 3066.3 TRUE FALSE FALSE 2607.383485 2605.781603 2690.601277 2602.064884 3185.126575 3552.818292 3614.951765 4663.742539 2703.950162 3048.061511 0.855423513 0.854897971 0.882725387 0.8536786 1.044967945 1.165599276 1.185983863 1.53006838 0.887104854 1 11.5736763 -4.197635305 0.814393635 0.915889408 1.902873245 0.902121696 0.064730758 0.706781168 0.315202219 0.012820385 0.643228314 6.34E-05 4.197635305 0.986983837 (ac)MEDLDQSPLVSSSDS(ph)PPRPQPAFK ddPTM_HeLa_CUDC101_4h_R1 1 MEDLDQSPLVSSSDSPPRPQPAFK 24 1 Q9NQC3-5;Q9NQC3;Q9NQC3-2;Q9NQC3-4 Q9NQC3-5 RTN4 Reticulon-4 1 0 MEDLDQS(0.014)PLVS(0.107)S(0.107)S(0.35)DS(0.423)PPRPQPAFK 46.296 0.0003273 108520000 1773.2 2069.7 1218.9 1876.7 1768.8 2111.5 2115.8 1974.1 1603.2 1564.3 TRUE FALSE FALSE 1565.348184 2133.465004 1284.797421 1953.239938 1638.319148 2071.226655 2197.407115 2198.823564 1537.115417 1554.995474 1.006657711 1.372007211 0.826238688 1.25610651 1.053584512 1.331982433 1.413127659 1.414038562 0.988501538 1 10.60269467 -4.19685144 0.391311874 0.999106717 1.846414147 0.491492362 0.144958771 3.124548017 0.314379787 0.037379363 1.251793998 6.36E-05 4.19685144 0.84730743 LCIGNITNK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LCIGNITNKK 10 1 F5H2U7;A0A1W2PNT6;F5GYH1;A0A1W2PRM0;A0A1W2PRL5;A0A1W2PR09;Q8NC96 F5H2U7 NECAP1 Adaptin ear-binding coat-associated protein 1 0 1 ; LCIGNITNK(1)K;LCIGNITNK(1)K 112.11 0.0052022 1429500 419.99 480.71 570.91 545.11 662.64 751.13 1081.59 1108.58 486.93 409.37 FALSE TRUE FALSE 370.7594089 495.5201053 601.7751215 567.341942 613.7583674 736.8034467 1123.307289 1234.776266 466.8585393 406.935049 0.911102176 1.217688441 1.478798946 1.394183036 1.50824651 1.810616826 2.760409287 3.034332553 1.147255663 1 8.668654734 -3.651297721 0.445555289 0.949421126 6.305750697 0.940749275 0.166743705 1.080353888 0.09774498 0.037259544 3.436535366 0.000223204 3.651297721 5.356329571 up VLNT(ph)GSDVEEAVADALKKPAR ddPTM_HeLa_CUDC101_4h_R1 2 VLNTGSDVEEAVADALKKPAR 21 2 E3W994;J3KR49;O75122 E3W994 CLASP2 CLIP-associating protein 2 1 0 VLNT(0.71)GS(0.29)DVEEAVADALKKPAR;VLNT(0.66)GS(0.34)DVEEAVADALKKPAR ; 111.88 1.81E-05 87517000 13829.3 11315.2 11409.2 10456.5 12848.8 10043.3 10470 10200 12150.8 9978 TRUE FALSE FALSE 12208.25042 11663.8079 12026.01586 10882.96127 11900.96962 9851.740786 10873.83141 11361.12677 11649.93888 9918.650412 1.230837857 1.175947071 1.212464939 1.097221982 1.199857756 0.99325416 1.096301508 1.145430709 1.174548794 1 13.27592812 -4.196306891 18.38138186 1.119316183 1.145435827 0 0.080625203 17273.94701 4869865.375 0.013841421 18.86442839 6.36E-05 4.196306891 0.026119644 KPSPQPS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 KPSPQPSSPR 10 1 G3V5E1;O75909-1;O75909;O75909-4 G3V5E1 CCNK Cyclin-K 1 0 KPSPQPS(0.5)S(0.5)PR 74.649 0.029519 48651000 5641.7 2362.8 5675.1 6190.9 3618 2966.4 4111.6 1943.1 5021.4 6127.2 TRUE FALSE FALSE 4980.388478 2435.595067 5981.913072 6443.391661 3351.107348 2909.820862 4270.185789 2164.29465 4814.415767 6090.755142 0.817696388 0.399883924 0.982129955 1.057897011 0.55019571 0.477743858 0.701092999 0.355340939 0.790446448 1 12.57240539 -4.195612255 0.173870758 1.04731469 1.35E-16 0.274094373 0.208464756 15.6616454 0.469861438 0.403866189 3.728122158 6.37E-05 4.195612255 -1.04731469 SQEDEISS(ph)PVNK ddPTM_HeLa_CUDC101_4h_R1 2 SQEDEISSPVNK 12 0 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 SQEDEIS(0.037)S(0.963)PVNK;SQEDEIS(0.087)S(0.913)PVNK ; 216.88 3.45E-24 125168000 16472.5 11327.1 11330 10973.1 13297.2 12588.2 9335.3 3866.4 11266.8 13961.1 TRUE FALSE FALSE 14541.61852 11676.07453 11942.53407 11420.63045 12316.29205 12348.10106 9695.365648 4306.535347 10802.37774 13878.05876 1.047813587 0.841333412 0.860533471 0.822927086 0.887465046 0.889757082 0.698611082 0.310312517 0.778378153 1 13.76051816 -4.195601896 0.774152519 0.989128877 6.74E-121 0.67754712 0.109475255 0.936093819 0.372723945 0.016285122 0.816956762 6.37E-05 4.195601896 -0.989128877 AADPPAENSS(ph)APEAEQGGAE ddPTM_HeLa_CUDC101_4h_R1 2 AADPPAENSSAPEAEQGGAE 20 0 H0Y449;P67809 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 1 0 AADPPAENS(0.126)S(0.874)APEAEQGGAE;AADPPAENS(0.428)S(0.572)APEAEQGGAE ; 128.1 1.91E-05 138437000 5603.7 5637.1 4742 4720.8 5596.4 5404 5314.2 5387.4 6009.6 5176.2 TRUE FALSE FALSE 4946.842781 5810.772369 4998.366864 4913.334629 5183.564722 5300.927704 5519.170474 6000.679839 5761.881744 5145.411732 0.96140854 1.129311447 0.971422138 0.954896301 1.007414954 1.030224204 1.072639229 1.166219566 1.119809656 1 12.32907081 -4.193531931 1.061217782 0.990894608 1.27342865 0.258457855 0.062218858 1.109130052 0.891609919 0.007225579 0.36413665 6.40E-05 4.193531931 0.282534042 DGLNDDDFEPYLS(ph)PQAR ddPTM_HeLa_CUDC101_4h_R1 4 DGLNDDDFEPYLSPQAR 17 0 Q9Y5A9;S4R3J8 Q9Y5A9 YTHDF2 YTH domain-containing family protein 2 1 0 DGLNDDDFEPYLS(1)PQAR;DGLNDDDFEPYLS(1)PQAR;DGLNDDDFEPYLS(1)PQAR;DGLNDDDFEPYLS(1)PQAR ;;; 267.69 5.09E-104 123311600 7787.9 6511.64 3370.69 5338.39 6182.39 5735.26 4954.72 1735.68 3317 5162.6 TRUE FALSE FALSE 6875.014168 6712.25591 3552.919697 5556.112619 5726.327407 5625.869471 5145.82521 1933.262795 3180.271856 5131.892626 1.339664461 1.307949406 0.692321519 1.082663459 1.115831492 1.096256271 1.002714902 0.376715363 0.619707404 1 12.32527527 -4.191671698 2.236132712 1.1291411 0.09234053 0.359570916 0.233877096 0.453131326 2.203012132 0.027434871 0.987264314 6.43E-05 4.191671698 -1.03680057 KTQMAEVLPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 KTQMAEVLPSPR 12 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 KTQMAEVLPS(1)PR 95.57 0.0081607 32868000 3066.4 2429.7 2622.2 2541.2 2397.3 2682.9 1844.9 884.48 1795.2 2934.7 TRUE FALSE FALSE 2706.96124 2504.556177 2763.964064 2644.84112 2220.455955 2631.728153 1916.058411 985.165628 1721.201096 2917.244274 0.927917235 0.858534954 0.94745719 0.906623125 0.761148449 0.902128141 0.656804241 0.337704195 0.590009247 1 11.51039048 -4.190503531 0.920806458 0.948137961 5.66E-34 0.556736297 0.130110675 0.562420094 0.326990633 0.010685478 0.549060151 6.45E-05 4.190503531 -0.948137961 SRS(ph)LSNSNPDISGTPTSPDDEVR ddPTM_HeLa_CUDC101_4h_R1 1 SRSLSNSNPDISGTPTSPDDEVR 23 1 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 S(0.255)RS(0.627)LS(0.105)NS(0.013)NPDISGTPTSPDDEVR 76.731 0.00045994 0 752.94 601.07 553.63 599.63 727.4 721.19 725.56 859.4 727.04 766 TRUE FALSE FALSE 664.6815146 619.5882543 583.5609124 624.0855032 673.7411512 707.4345023 753.5450922 957.2306222 697.0711035 761.4437979 0.872922619 0.813701886 0.766387374 0.819608098 0.884820591 0.929069886 0.989626673 1.257125772 0.91545969 1 9.572593745 -4.190005979 1.867608675 0.903643234 1.414034754 0.739716472 0.067141628 0.555956312 1.699409449 0.012751547 0.522564054 6.46E-05 4.190005979 0.51039152 SSSGGVLSASSSSSK(ac)LLK ddPTM_HeLa_CUDC101_4h_R1 2 SSSGGVLSASSSSSKLLK 18 1 A0A2R8YDD6;O15265-3;O15265;O15265-2 A0A2R8YDD6 ATXN7 Ataxin-7 0 1 ; SSSGGVLSASSSSSK(1)LLK;SSSGGVLSASSSSSK(1)LLK 299.27 2.01E-109 1028080 141.69 209.56 226.891 343.97 518.94 544.71 462.23 624.19 0 0 FALSE TRUE FALSE 125.081313 216.0162952 239.1574138 357.9985834 480.6588301 534.3205643 480.0583659 695.2452665 0 0 0 LSS(ph)SPGLFGAFSVR ddPTM_HeLa_CUDC101_4h_R1 2 LSSSPGLFGAFSVR 14 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 0 LS(0.1)S(0.888)S(0.012)PGLFGAFSVR;LSS(0.901)S(0.099)PGLFGAFSVR ; 152 0.00018069 51429000 5125.4 4090.6 3709 3683.9 4499 3969.4 3503.5 2227.9 4204.8 3480.6 TRUE FALSE FALSE 4524.608382 4216.626537 3909.519759 3834.145365 4167.117733 3893.690308 3638.631169 2481.515131 4031.476364 3459.897236 1.307729124 1.218714386 1.129952566 1.108167412 1.204405058 1.125377444 1.05165874 0.717222207 1.165201186 1 11.75651347 -4.189568465 1.916836613 1.15349763 0.526869718 0.753179341 0.075798837 0.562555038 1.833742226 0.016387965 0.662373678 6.46E-05 4.189568465 -0.626627912 TPSSPLQSCTPS(ph)LSPR ddPTM_HeLa_CUDC101_4h_R1 1 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 0 TPSSPLQS(0.002)CT(0.017)PS(0.952)LS(0.029)PR 71.402 0.030138 11672000 1554 1450.5 949.94 1035 1572.8 1608.7 1650.8 2054.2 1492 1663.4 TRUE FALSE FALSE 1371.842476 1495.188186 1001.29663 1077.211774 1456.777677 1578.016728 1714.471909 2288.041825 1430.499128 1653.506023 0.829656776 0.904253244 0.605559711 0.651471334 0.881023508 0.954345921 1.036870677 1.383751733 0.865130885 1 10.69131259 -4.188622873 1.473602563 0.871608843 1.649160899 0.662965833 0.118898798 0.818120224 1.40019518 0.020818793 0.973693799 6.48E-05 4.188622873 0.777552056 S(ph)GSDAGEARPPTPASPR ddPTM_HeLa_CUDC101_4h_R1 1 SGSDAGEARPPTPASPR 17 1 Q96FS4;F6RY50;E9PIB3 Q96FS4 SIPA1 Signal-induced proliferation-associated protein 1 1 0 S(0.509)GS(0.491)DAGEARPPTPASPR 106.35 0.007073 4302400 1271.1 1084.3 1114.9 1245.4 1250.6 1264.9 1406.4 1841.2 1123.7 1259 TRUE FALSE FALSE 1122.103585 1117.705998 1175.174866 1296.192795 1158.34573 1240.77414 1460.645319 2050.794766 1077.38061 1251.511412 0.896598764 0.893084943 0.939004515 1.035701938 0.925557465 0.991420556 1.167105074 1.638654467 0.860863593 1 10.28945573 -4.188379145 1.607356491 0.949006695 1.984017231 0.947762216 0.049853782 0.193343336 0.407390319 0.007303548 0.328389497 6.48E-05 4.188379145 1.035010536 RDDIEDGDSMISSATS(ph)DTGSAK ddPTM_HeLa_CUDC101_4h_R1 1 RDDIEDGDSMISSATSDTGSAK 22 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5;Q86U86-6 Q86U86-8 PBRM1 Protein polybromo-1 1 0 RDDIEDGDSMIS(0.048)S(0.126)AT(0.083)S(0.565)DT(0.131)GS(0.047)AK 92.613 0.0002026 7442800 2492.6 2645.7 2268.3 1985.3 2847.1 2655.9 2627.2 2757.1 2405 2464.6 TRUE FALSE FALSE 2200.421207 2727.210881 2390.931159 2066.269115 2637.075105 2605.243133 2728.531984 3070.957119 2305.864882 2449.94045 0.898152935 1.113174356 0.97591399 0.843395649 1.076383349 1.063390391 1.113713594 1.253482353 0.941192217 1 11.25853097 -4.187389265 0.749397282 0.959841953 1.449983572 0.595691292 0.072779072 1.519678672 0.559305791 0.01257242 0.640252474 6.50E-05 4.187389265 0.490141619 SPPS(ph)PVER ddPTM_HeLa_CUDC101_4h_R1 1 SPPSPVER 8 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 S(0.005)PPS(0.995)PVER 88.134 0.031794 365420000 2206.3 1452.8 2411.7 2123 2016.5 2158 1763.3 841.42 2356.3 2325.3 TRUE FALSE FALSE 1947.680859 1497.559046 2542.083797 2209.585116 1867.746812 2116.839745 1831.311072 937.2038517 2259.172317 2311.469012 0.842616037 0.647881948 1.099769793 0.955922448 0.808034545 0.915798453 0.792271522 0.405458108 0.977375126 1 11.17459431 -4.187136829 1.946246131 0.911042702 0.183777732 0.625325851 0.116134924 0.495736887 1.670152474 0.016916642 0.686709752 6.50E-05 4.187136829 -0.72726497 SSSMSSLTGAYTSGIPSSSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSMSSLTGAYTSGIPSSSR 20 0 A8CG34-2;A8CG34 A8CG34-2 POM121C Nuclear envelope pore membrane protein POM 121C 0 0 44.662 0.030948 3403000 210.93 393.33 379.75 454.45 673.73 620.21 646.37 480.38 713.02 235.65 FALSE FALSE TRUE 186.2051051 405.4480311 400.2804337 472.9844353 624.0302802 608.3805276 671.3007074 535.0645174 683.6290138 234.2483433 0.794904683 1.730846952 1.708786615 2.019158081 2.663968809 2.597160428 2.865765016 2.284176314 2.918394231 1 7.871895034 -6.534402003 0.971576567 0.895442546 2.641188921 0.090381793 0.677562373 0.098631083 0.185924516 0.043566996 0.07843549 2.92E-07 6.534402003 1.745746376 ATLPS(ph)PDKLPGFK ddPTM_HeLa_CUDC101_4h_R1 1 ATLPSPDKLPGFK 13 1 P22314;P22314-2;Q5JRR6 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 0 ATLPS(1)PDKLPGFK 78.505 0.019275 102360000 1891.5 2124.3 1908.1 1620.2 1900.5 1528.8 1794.9 1402.8 1863.7 1633.2 TRUE FALSE FALSE 1669.781237 2189.747165 2011.257658 1686.278759 1760.303901 1499.640687 1864.129894 1562.489082 1786.877497 1623.485654 1.028516164 1.348793665 1.238851512 1.038677955 1.08427438 0.923716624 1.148226897 0.962428635 1.100642616 1 10.66487892 -4.186902953 20.12342841 1.058253776 0.962414017 0.004501756 0.122621086 34942.81567 9428005.045 0.018041745 94.28362924 6.50E-05 4.186902953 -0.095839759 SMMS(ph)PMAER ddPTM_HeLa_CUDC101_4h_R1 4 SMMSPMAER 9 0 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 S(0.069)MMS(0.931)PMAER;S(0.224)MMS(0.776)PMAER;SMMS(1)PMAER;S(0.002)MMS(0.998)PMAER ;;; 123.11 0.0049488 95989000 5698.9 4526.4 4768.4 4880.8 5445.3 5200.4 4615 3220.87 5669.1 5418.5 TRUE FALSE FALSE 5030.883581 4665.853019 5026.194128 5079.860121 5043.611068 5101.211034 4793.002096 3587.520822 5435.417298 5386.270521 0.934019849 0.866249291 0.933149219 0.943112698 0.936382799 0.947076649 0.889855435 0.666049135 1.009124454 1 12.39507097 -4.185564841 1.97767069 0.953489231 0.54104673 0.831732221 0.037590281 0.306881691 1.072745418 0.006024096 0.244343337 6.52E-05 4.185564841 -0.4124425 SGS(ph)SQELDVKPS(ph)ASPQER ddPTM_HeLa_CUDC101_4h_R1 1 SGSSQELDVKPSASPQER 18 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.108)GS(0.868)S(0.024)QELDVKPS(0.972)AS(0.028)PQER 144.4 2.20E-05 0 2177.5 1677.9 1826.9 1775.6 1930.1 2158.1 2090.7 2392 2000.3 2112.7 TRUE FALSE FALSE 1922.256751 1729.59411 1925.66774 1848.016643 1787.720368 2116.937838 2171.338999 2664.295611 1917.846787 2100.133566 0.915302142 0.823563862 0.916926319 0.879951957 0.851241272 1.008001525 1.033905193 1.268631507 0.913202292 1 11.03626537 -4.184710628 1.510524659 0.934002457 1.440858412 0.791056489 0.05551544 0.575850577 1.038223965 0.009705161 0.456964516 6.54E-05 4.184710628 0.506855955 SSSPAPADIAQTVQEDLR ddPTM_HeLa_CUDC101_4h_R1 2 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 0 ; ; 240.46 1.76E-43 7610800 3447.13 3039.44 2672.77 2623.84 2921.1 3246.1 2774.81 3017.6 3340.9 2948.81 FALSE FALSE TRUE 3043.062647 3133.081544 2817.268031 2730.851536 2705.616273 3184.186051 2881.835351 3361.111386 3203.186688 2931.270347 1.038137833 1.068847692 0.961108222 0.93162732 0.923018334 1.086281944 0.9831353 1.146639848 1.092763993 1 11.51731032 -4.254809827 24.51568796 1.008657015 1.146639932 0.333515038 0.058177658 480.0539814 1775148.229 0.007302782 0.091882905 5.56E-05 4.254809827 0.137982916 ALIQTCLNSPDSPPRS(ph)DPTTDQR ddPTM_HeLa_CUDC101_4h_R1 3 ALIQTCLNSPDSPPRSDPTTDQR 23 1 P11831 P11831 SRF Serum response factor 1 0 ALIQTCLNSPDS(0.006)PPRS(0.981)DPT(0.006)T(0.006)DQR;ALIQTCLNS(0.001)PDS(0.031)PPRS(0.942)DPT(0.013)T(0.013)DQR;ALIQTCLNSPDS(0.008)PPRS(0.975)DPT(0.008)T(0.008)DQR ;; 97.589 6.22E-05 257138000 4174.3 3579.06 3517.68 3407.67 3981.49 3690.75 3711.44 4160.21 4412.7 3498.82 TRUE FALSE FALSE 3684.994882 3689.326596 3707.856421 3546.649512 3687.783415 3620.355093 3854.591484 4633.79149 4230.806638 3478.008863 1.059512792 1.06075825 1.066085961 1.019735616 1.060314554 1.040927506 1.108275348 1.332311582 1.216445042 1 11.76404589 -4.184111547 1.877885944 1.035485482 1.467776064 0.60258096 0.060894577 0.208293871 0.63742607 0.003965349 0.167342212 6.54E-05 4.184111547 0.432290582 RISFPGSS(ph)ES(ph)PLSS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 RISFPGSSESPLSSK 15 1 Q15911;Q15911-2 Q15911 ZFHX3 Zinc finger homeobox protein 3 3 0 RIS(0.017)FPGS(0.304)S(0.68)ES(0.998)PLS(0.01)S(0.99)K 101.42 0.002582 7991700 1421.5 1135.9 1155 1407.4 1364.4 1463.3 1564.7 1913.9 1101.1 1459.7 TRUE FALSE FALSE 1254.873925 1170.895733 1217.442794 1464.799855 1263.75093 1435.389991 1625.051003 2131.77064 1055.712192 1451.017639 0.864823342 0.806947966 0.839026874 1.00949831 0.870941122 0.98922987 1.119938834 1.469155565 0.727566753 1 10.50284934 -4.183957804 1.393552064 0.918657753 1.773361804 0.807431063 0.087529784 0.435053761 0.647289359 0.011183722 0.545540458 6.55E-05 4.183957804 0.854704051 TYAGGTAS(ph)ATK ddPTM_HeLa_CUDC101_4h_R1 1 TYAGGTASATK 11 0 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;F8W7E0;H0YA91;E9PSG1;H0Y944;D6RBR1;D6RGF7;E7EN75 P20810-6 CAST Calpastatin 1 0 TYAGGT(0.002)AS(0.899)AT(0.099)K 103.97 0.009964 26491000 1898.5 1585.1 1637.2 2242.7 1554.8 1456.5 1653 672.1 2481.8 2283.7 TRUE FALSE FALSE 1675.960708 1633.935052 1725.711984 2334.167 1440.105502 1428.719689 1716.756764 748.6091473 2379.499154 2270.116451 0.738270809 0.719758254 0.760186546 1.028214653 0.634375167 0.629359647 0.756241718 0.329766848 1.048183741 1 11.14855059 -4.183601652 0.096605447 1.192159939 3.14E-24 0.531221529 0.14238042 40.97301566 0.630334247 1.882148706 7.298726103 6.55E-05 4.183601652 -1.192159939 KIEEAMDGSET(ph)PQLFTVLPEK ddPTM_HeLa_CUDC101_4h_R1 1 KIEEAMDGSETPQLFTVLPEK 21 1 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 KIEEAMDGS(0.003)ET(0.997)PQLFTVLPEK 89.483 0.0072815 17467000 3177.6 2363.2 2754 2715.9 2705.8 3187.1 3011.8 3522.6 2699.5 3403 TRUE FALSE FALSE 2805.126545 2436.007391 2902.88957 2826.666141 2506.198525 3126.311378 3127.966135 3923.598545 2588.225467 3382.758805 0.829242257 0.72012447 0.85814264 0.835609721 0.740874141 0.924189857 0.924679031 1.15988126 0.765122676 1 11.7239846 -4.18357924 2.181615841 0.880733782 1.271720405 0.499390376 0.089397196 0.695851785 3.110027178 0.01465951 0.565941717 6.55E-05 4.18357924 0.390986623 AITVFS(ph)PDGHLFQVEYAQEAVKK ddPTM_HeLa_CUDC101_4h_R1 1 AITVFSPDGHLFQVEYAQEAVKK 23 1 O14818;F5GY34;O14818-4;Q8TAA3-2;Q8TAA3-5;Q8TAA3 O14818 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like 1 0 AIT(0.01)VFS(0.99)PDGHLFQVEYAQEAVKK 105.17 1.10E-05 14250000 1211 1310.7 1088.2 934.36 1576.2 947.12 874.11 413.57 1453 1375.4 TRUE FALSE FALSE 1069.048416 1351.081113 1147.031384 972.4672394 1459.926866 929.055264 907.8247155 460.6491371 1393.106725 1367.21906 0.781914506 0.988196518 0.83895216 0.711273905 1.067807573 0.679521879 0.663993607 0.336924163 1.018934541 1 10.4170287 -4.182952267 1.023568035 0.894197531 4.27E-14 0.696773264 0.117003818 0.930450052 0.679866145 0.017994813 0.942007839 6.56E-05 4.182952267 -0.894197531 NRHS(ph)PDHPGMGSSQASSSSSLR ddPTM_HeLa_CUDC101_4h_R1 2 NRHSPDHPGMGSSQASSSSSLR 22 1 J3KR33;A0JLT2 J3KR33 MED19 Mediator of RNA polymerase II transcription subunit 19 1 0 NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(0.999)PDHPGMGS(0.001)SQASSSSSLR ; 121.14 2.70E-07 10390600 4004.2 1027.74 857.73 648.06 3019.7 2216.7 2614.1 1691.11 2274.7 1939.51 TRUE FALSE FALSE 3534.833746 1059.403451 904.1014783 674.490688 2796.942747 2174.420141 2714.926713 1883.619127 2180.935903 1927.973708 1.833444995 0.549490611 0.468938697 0.349844339 1.450716229 1.127826656 1.408176212 0.976994198 1.131206247 1 10.91286966 -4.182226254 18.26809115 1.200229863 0.97691051 0 0.473122492 23189.60141 5339433.607 0.078014619 336.5820841 6.57E-05 4.182226254 -0.223319353 TTKT(ph)PEDGDYSYEIIEK ddPTM_HeLa_CUDC101_4h_R1 2 TTKTPEDGDYSYEIIEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.138)T(0.138)KT(0.723)PEDGDYSYEIIEK;T(0.243)T(0.054)KT(0.701)PEDGDY(0.001)S(0.001)YEIIEK ; 96.848 0.0049633 196110000 10910.1 10056.7 10225.8 9253.5 11549.6 9943.9 8693.9 6243.9 12010.4 10882.1 TRUE FALSE FALSE 9631.234617 10366.53501 10778.63768 9630.897727 10697.60902 9754.236675 9029.226635 6954.680337 11515.32623 10817.37279 0.890348776 0.958322803 0.996419176 0.890317632 0.988928572 0.901719564 0.834696817 0.642917691 1.06452153 1 13.40106253 -4.181708424 1.342336043 0.949834364 0.468987271 0.782808071 0.052186044 0.496704019 0.674471622 0.00682343 0.340252039 6.58E-05 4.181708424 -0.480847093 ELTIGS(ph)KLQDAEIAR ddPTM_HeLa_CUDC101_4h_R1 2 ELTIGSKLQDAEIAR 15 1 R4GN98;P06703 R4GN98 S100A6 Protein S100;Protein S100-A6 1 0 ELT(0.002)IGS(0.998)KLQDAEIAR;ELT(0.001)IGS(0.999)KLQDAEIAR ; 130.64 0.0033323 20393800 2051.19 1886.17 1932.24 1952.17 1976.64 1946.63 2641.7 5106.4 2130.98 1601.95 TRUE FALSE FALSE 1810.752618 1944.280662 2036.702739 2031.787931 1830.827205 1909.501276 2743.591254 5687.691935 2043.140102 1592.42153 1.13710634 1.220958537 1.278997238 1.275910864 1.149712668 1.199117972 1.722905149 3.571725091 1.283039738 1 10.63700657 -4.18060782 1.849104114 1.115740949 4.722153873 0.978431511 0.105475977 0.111243869 0.325172382 0.017021642 0.738975317 6.60E-05 4.18060782 3.606412924 up LNECIS(ph)PVANEMNHLPAHSHDLQR ddPTM_HeLa_CUDC101_4h_R1 3 LNECISPVANEMNHLPAHSHDLQR 24 0 P23497;P23497-2;P23497-3;P23497-4;P23497-5 P23497 SP100 Nuclear autoantigen Sp-100 1 0 LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR ;; 107.25 4.50E-07 43257000 6028.7 5076.9 5512.17 5274.93 6808.1 5779.9 4836.11 4745.19 6209.5 5641.2 TRUE FALSE FALSE 5322.024925 5233.313271 5810.174584 5490.064446 6305.880027 5669.658037 5022.640383 5285.363249 5953.541782 5607.645892 0.949065798 0.933246031 1.036116527 0.979031942 1.124514662 1.011058499 0.895677166 0.942527997 1.061682905 1 12.45317953 -4.1801053 0.002364951 1.175722734 0.784059727 0 0.065574835 3523107.67 1287.216845 104750.0137 108453.1285 6.61E-05 4.1801053 -0.391663007 GEAAAERPGEAAVAS(ph)SPSK ddPTM_HeLa_CUDC101_4h_R1 4 GEAAAERPGEAAVASSPSK 19 1 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 GEAAAERPGEAAVAS(0.53)S(0.446)PS(0.024)K;GEAAAERPGEAAVAS(0.857)S(0.124)PS(0.019)K;GEAAAERPGEAAVAS(0.95)S(0.05)PSK;GEAAAERPGEAAVAS(0.647)S(0.252)PS(0.1)K ;;; 171.78 8.07E-07 1751636000 15135.2 11688.57 11788.11 11382.5 10768.15 10888.99 9744.8 6010.56 13228.45 14176.93 TRUE FALSE FALSE 13361.0748 12048.68099 12425.41088 11846.72755 9973.805028 10681.30066 10120.6602 6694.777855 12683.16769 14092.60499 0.948091202 0.854964784 0.881697237 0.84063433 0.707733243 0.757936568 0.718153969 0.475056092 0.899987454 1 13.7826507 -3.640819851 0.279051501 1.006837412 1.52E-15 0.843941591 0.056580086 2.366275516 0.105651817 0.02307336 0.866262903 0.000228655 3.640819851 -1.006837412 down LEEFS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 LEEFSPR 7 0 Q9UGU0-2;Q9UGU0;I3L1M7 Q9UGU0-2 TCF20 Transcription factor 20 1 0 LEEFS(1)PR;LEEFS(1)PR ; 88.177 0.035507 7916700 7385.7 6781.1 5643.5 6234.9 6063.9 5671.2 4917.4 3153.6 7230.1 7349.5 TRUE FALSE FALSE 6519.959442 6990.017653 5948.604681 6489.186172 5616.578178 5563.031309 5107.065765 3512.593077 6932.072218 7305.784847 0.892437921 0.956778471 0.814232119 0.888225743 0.768785051 0.761455672 0.699044096 0.480796129 0.948847025 1 12.83482355 -3.634118301 0.348042451 0.967677593 1.17E-17 0.898599694 0.046514711 2.085259862 0.127425075 0.015474281 0.925061227 0.00023221 3.634118301 -0.967677593 down S(ph)PISVPGGSALISNLGK ddPTM_HeLa_CUDC101_4h_R1 2 SPISVPGGSALISNLGK 17 0 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 S(0.687)PIS(0.313)VPGGSALISNLGK;S(1)PISVPGGSALISNLGK ; 159.69 4.67E-05 79521000 6042.6 5182.1 4186.3 4072.4 4830.6 4720.7 4121.5 2080.73 6009.4 5388 TRUE FALSE FALSE 5334.295588 5341.754359 4412.624041 4238.490074 4474.256262 4630.660513 4280.467636 2317.591893 5761.689988 5355.951936 0.995956583 0.997349196 0.823872972 0.791360738 0.835380212 0.864582163 0.799198291 0.432713348 1.07575461 1 12.3869273 -3.630782737 0.37569139 1.003506354 6.90E-15 0.754786065 0.085251563 3.33142573 0.228021913 0.023832585 1.662550171 0.000234001 3.630782737 -1.003506354 down VQISSQNPPPS(ph)PMPGR ddPTM_HeLa_CUDC101_4h_R1 1 VQISSQNPPPSPMPGR 16 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 VQISSQNPPPS(1)PMPGR 108.96 0.00036594 0 1592.1 1501.2 1237.9 1128.6 1617.4 1410 1520.4 2242.1 1184.9 1295.5 TRUE FALSE FALSE 1405.476451 1547.450193 1304.824618 1174.629186 1498.087624 1383.106599 1579.042337 2497.331601 1136.05792 1287.794308 1.091382717 1.201628383 1.013224402 0.912124847 1.163297286 1.074012045 1.226160364 1.939231743 0.882173429 1 10.33068646 -4.179748423 2.059593906 1.052758869 2.322518125 0.888987326 0.094841619 0.184404426 0.704837648 0.011427568 0.468431774 6.61E-05 4.179748423 1.269759256 SSQPDPDKNPAS(ph)SK ddPTM_HeLa_CUDC101_4h_R1 1 SSQPDPDKNPASSK 14 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 SSQPDPDKNPAS(0.733)S(0.267)K 77.357 0.017642 18256000 2821.9 1976.6 2470.5 2315.2 2249.4 2346.3 2108.1 641.31 1866.8 2625.1 TRUE FALSE FALSE 2491.12116 2037.496703 2604.062703 2409.623863 2083.466243 2301.548237 2189.410123 714.3141381 1789.849714 2609.485788 0.954640631 0.780803909 0.99792178 0.92340946 0.79842023 0.881993014 0.839019754 0.273737508 0.685901307 1 11.34954983 -4.1792869 2.041323192 0.944855289 1.35E-17 0.696658189 0.11220719 0.262756572 0.980847103 0.011943401 0.493578898 6.62E-05 4.1792869 -0.944855289 LGS(ph)LSER ddPTM_HeLa_CUDC101_4h_R1 1 LGSLSER 7 0 O60664-4;O60664-3;O60664;O60664-2 O60664-4 PLIN3 Perilipin-3 1 0 LGS(0.999)LS(0.001)ER 93.143 0.029845 9126400 2708 2622.6 1957.8 2195.4 2952.8 2686.8 2893.8 3534.8 2904.4 2868 TRUE FALSE FALSE 2390.572345 2703.399197 2063.64459 2284.937901 2734.977827 2635.553767 3005.414835 3937.187344 2784.679403 2850.941008 0.838520453 0.948248031 0.723846822 0.80146797 0.959324594 0.924450474 1.054183453 1.381013263 0.976757988 1 11.47722247 -4.177654952 1.574041446 0.901514674 1.634444796 0.767294025 0.081446082 0.538614099 1.05779049 0.013438212 0.642040442 6.64E-05 4.177654952 0.732930122 ESSAMAS(ph)PLPR ddPTM_HeLa_CUDC101_4h_R1 2 ESSAMASPLPR 11 0 Q9C0C2;E9PKK0;E9PKE7 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 ESSAMAS(1)PLPR;ESSAMAS(1)PLPR ; 166.11 3.44E-05 27428000 5244.2 4388.2 4647.3 3944.5 4477.3 3723.2 3440.3 2328.2 4954.3 5532.1 TRUE FALSE FALSE 4629.482826 4523.395241 4898.547095 4105.37376 4147.018499 3652.186163 3572.993523 2593.232877 4750.081657 5499.194823 0.841847393 0.822555917 0.890775332 0.746540883 0.754113763 0.664131074 0.649730304 0.471565922 0.863777664 1 12.42500468 -3.613571551 0.215741968 0.998374772 1.11E-17 0.856069689 0.053617919 3.521590936 0.111122281 0.044588354 0.986559168 0.00024346 3.613571551 -0.998374772 down TVSPGSVS(ph)PIHGQGQVVENLK ddPTM_HeLa_CUDC101_4h_R1 3 TVSPGSVSPIHGQGQVVENLK 21 0 A0A087WVF7;Q9NZM3-2;Q9NZM3;Q9NZM3-4;Q9NZM3-3 A0A087WVF7 ITSN2 Intersectin-2 1 0 TVS(0.001)PGS(0.024)VS(0.975)PIHGQGQVVENLK;TVSPGS(0.026)VS(0.974)PIHGQGQVVENLK;TVSPGS(0.01)VS(0.99)PIHGQGQVVENLK ;; 101.85 0.00011046 128624000 10244 7559.8 7987.9 7239.8 9437.2 8827 8500.1 9090.4 9263.6 8549.3 TRUE FALSE FALSE 9043.213849 7792.708477 8419.750036 7535.070337 8741.036558 8658.639682 8827.951704 10125.21439 8881.750487 8498.448383 1.064101756 0.916956617 0.99073968 0.886640713 1.028544996 1.018849476 1.038772174 1.191419178 1.045102598 1 13.05298375 -4.17756853 2.169369087 1.008771295 1.267705797 0.538225926 0.053511128 0.615200735 2.669869299 0.008231854 0.331891001 6.64E-05 4.17756853 0.258934502 RNPNPSSS(ph)SIFGR ddPTM_HeLa_CUDC101_4h_R1 1 RNPNPSSSSIFGR 13 1 Q9ULJ8-3 Q9ULJ8-3 PPP1R9A Neurabin-1 1 0 RNPNPS(0.22)S(0.22)S(0.552)S(0.009)IFGR 62.813 0.037914 103320000 1675.8 2052.1 2359.3 1912.8 2346.8 2340.6 2416.5 2515.3 2244.3 2448.5 TRUE FALSE FALSE 1479.365264 2115.322769 2486.850894 1990.812252 2173.681239 2295.956955 2509.705214 2801.631585 2151.789004 2433.936213 0.607807738 0.869095401 1.021740373 0.81793937 0.893072394 0.943310241 1.031130233 1.151070258 0.884077813 1 11.24907564 -4.177500185 0.66494547 0.826917662 1.391104061 0.396182144 0.108645818 3.147466776 0.888813342 0.027186973 1.374884156 6.65E-05 4.177500185 0.564186399 S(ph)IQDLTVTGTEPGQVSS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SIQDLTVTGTEPGQVSSR 18 0 Q9UG54;O43318-4;O43318-3;O43318-2;O43318 Q9UG54 DKFZp586F0420;MAP3K7 Mitogen-activated protein kinase kinase kinase 7 2 0 S(1)IQDLTVTGTEPGQVS(0.472)S(0.528)R 179.66 6.59E-17 0 1237.9 931.3 754.76 855.28 932.33 868.24 779.09 624.32 682.78 645.17 TRUE FALSE FALSE 1092.795239 959.9922491 795.5646086 890.1620152 863.5538734 851.6797686 809.1397623 695.3900652 654.6355194 641.3325001 1.703944893 1.496871356 1.240486968 1.387988313 1.346499473 1.327984732 1.261654075 1.084289452 1.02074278 1 9.324928709 -4.17622846 1.503545193 1.350250753 0.939397647 0.090749653 0.197838876 2.881013176 5.060174029 0.037882983 1.857040944 6.66E-05 4.17622846 -0.410853106 GWS(ph)QEGPVK ddPTM_HeLa_CUDC101_4h_R1 1 GWSQEGPVK 9 0 Q9C0C2;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 GWS(1)QEGPVK 109.72 0.010362 28184000 3390.9 2646.3 2289.3 2524.9 2621.8 3276 3518.6 6231 2474.5 3064.8 TRUE FALSE FALSE 2993.423842 2727.829366 2413.066483 2627.876336 2428.395037 3213.515758 3654.313581 6940.311853 2372.500063 3046.570433 0.982555272 0.895377089 0.792059969 0.862568712 0.797091382 1.054797789 1.199484358 2.278073659 0.778744531 1 11.57297038 -4.174146525 2.035934297 0.949301024 2.871730826 0.944033761 0.100333109 0.156462909 0.573216037 0.014032007 0.599609175 6.70E-05 4.174146525 1.922429802 up AEEAQKTES(ph)VDNEGE ddPTM_HeLa_CUDC101_4h_R1 1 AEEAQKTESVDNEGE 15 1 Q15651 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 0 AEEAQKTES(1)VDNEGE 128.71 0.0035739 19067000 4522.5 4154.5 4005.3 3929 3980.3 4709.1 4611.2 5616.7 4262.2 4680.9 TRUE FALSE FALSE 3992.379406 4282.495221 4221.838633 4089.241603 3686.681199 4619.281763 4789.055529 6256.082425 4086.510312 4653.057799 0.858011995 0.920361493 0.907325637 0.878828886 0.792313648 0.99274111 1.029227604 1.344509932 0.878241898 1 12.18396339 -4.173982189 1.663466012 0.917098874 1.562350792 0.844267239 0.057384573 0.433906853 0.966274187 0.010057567 0.477209162 6.70E-05 4.173982189 0.645251918 VVDYSQFQES(ph)DDADEDYGRDSGPPTKK ddPTM_HeLa_CUDC101_4h_R1 4 VVDYSQFQESDDADEDYGRDSGPPTKK 27 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 VVDY(0.001)S(0.019)QFQES(0.98)DDADEDYGRDSGPPTKK;VVDYS(0.002)QFQES(0.994)DDADEDY(0.002)GRDS(0.001)GPPTKK;VVDY(0.001)S(0.005)QFQES(0.986)DDADEDY(0.008)GRDSGPPTKK;VVDY(0.03)S(0.127)QFQES(0.843)DDADEDYGRDSGPPTKK ;;; 76.21 8.97E-05 2738119000 6320.9 7340.8 6769.4 7357.1 9836.7 7635.4 8002.3 9661.5 8169.8 6519.2 TRUE FALSE FALSE 5579.973684 7566.961347 7135.37424 7657.154338 9111.066238 7489.767466 8310.951392 10761.32611 7833.037386 6480.423508 0.861050775 1.167664634 1.101066039 1.181582396 1.405936854 1.155752777 1.28247041 1.660589943 1.208723068 1 12.66187238 -4.173857409 0.337342407 0.922889185 2.04993327 0.496308564 0.147063943 2.906839474 0.22320641 0.047580314 1.35251613 6.70E-05 4.173857409 1.127044086 NLVSPAYCTQES(ph)REEIPGGEAR ddPTM_HeLa_CUDC101_4h_R1 1 NLVSPAYCTQESREEIPGGEAR 22 1 Q9NUQ3 Q9NUQ3 TXLNG Gamma-taxilin 1 0 NLVS(0.001)PAY(0.006)CT(0.092)QES(0.901)REEIPGGEAR 75.057 0.0012663 33989000 1310.4 919.49 879.64 617.52 867.81 1167 1201.2 3700.9 840.46 524.6 TRUE FALSE FALSE 1156.796898 947.818397 927.1959992 642.7051347 803.7933852 1144.741419 1247.530686 4122.195496 805.8158831 521.4796559 2.218297273 1.817555846 1.778009916 1.232464445 1.541370552 2.195179441 2.392290231 7.904805969 1.545248935 1 9.026467161 -4.173442202 2.326409235 1.620768636 10.42632233 0.962257041 0.368001877 0.145061746 0.745479509 0.070462468 2.812089373 6.71E-05 4.173442202 8.805553693 up TDDTSSQS(ph)PAPSEK ddPTM_HeLa_CUDC101_4h_R1 2 TDDTSSQSPAPSEK 14 0 P12755 P12755 SKI Ski oncogene 1 0 TDDTSSQS(1)PAPSEK;TDDTSS(0.003)QS(0.995)PAPS(0.002)EK ; 195.5 2.20E-16 8649600 5397.6 4752.6 5013.6 5236.8 4470.2 3872.3 3273.3 1451.14 3010.8 3578.3 TRUE FALSE FALSE 4764.90151 4899.021973 5284.650381 5450.379339 4140.442252 3798.442329 3399.552277 1616.331912 2886.69355 3557.016112 1.339578276 1.377284167 1.485697622 1.532289753 1.164021225 1.067873242 0.955731481 0.454406688 0.811549191 1 11.79645179 -4.171422642 1.278186422 1.23139865 3.37E-09 0.570338721 0.207521951 0.962937724 1.148337523 0.030981353 1.631736067 6.74E-05 4.171422642 -1.231398647 GVTIPYRPKPSS(ph)SPVIFAGGQDR ddPTM_HeLa_CUDC101_4h_R1 2 GVTIPYRPKPSSSPVIFAGGQDR 23 2 Q15366-2;Q15366;Q15366-3;Q15366-6;H3BSS4 Q15366-2 PCBP2 Poly(rC)-binding protein 2 1 0 GVT(0.002)IPY(0.01)RPKPS(0.131)S(0.428)S(0.428)PVIFAGGQDR;GVTIPY(0.009)RPKPS(0.067)S(0.668)S(0.256)PVIFAGGQDR ; 69.581 0.001781 2648800000 5206.9 4894 5001.1 5127.3 4977.5 4676.6 4187.6 3198.5 4602.8 4829.6 TRUE FALSE FALSE 4596.555075 5044.778339 5271.474594 5336.413456 4610.319742 4587.401647 4349.117135 3562.604311 4413.070636 4800.873324 0.957441441 1.050804301 1.098024096 1.111550565 0.960308558 0.955534824 0.905901248 0.742074217 0.91922247 1 12.22908115 -4.171384677 1.263499696 1.00223239 0.588014107 0.665686569 0.05866764 0.85365072 0.99123611 0.009123776 0.481896215 6.74E-05 4.171384677 -0.414218283 ARGDS(ph)EALDEES ddPTM_HeLa_CUDC101_4h_R1 1 ARGDSEALDEES 12 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WZ99 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 0 ARGDS(1)EALDEES 113.52 0.024333 215560000 6159.9 5555.9 5785.5 5604.9 6598 6499.4 7050.3 7212.7 5555.4 5885.2 TRUE FALSE FALSE 5437.84586 5727.070694 6098.28163 5833.492048 6111.278685 6375.434774 7322.232433 8033.764613 5326.404061 5850.194569 0.929515386 0.978953884 1.042406634 0.997144963 1.044628279 1.089781664 1.251622035 1.373247423 0.910466139 1 12.51426889 -4.170725314 0.70349988 0.969848978 1.694063848 0.94194409 0.033190523 0.512687251 0.162201841 0.005807234 0.303163953 6.75E-05 4.170725314 0.724214869 TIQNSSVSPT(ph)SSSSSSSSTGETQTQSSSR ddPTM_HeLa_CUDC101_4h_R1 1 TIQNSSVSPTSSSSSSSSTGETQTQSSSR 29 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 TIQNS(0.001)S(0.005)VS(0.07)PT(0.39)S(0.39)S(0.105)S(0.028)S(0.008)S(0.002)SSSTGETQTQSSSR 129.8 2.35E-14 11972000 3107.4 1897.6 2809.1 2814 2629.4 2376.2 2018.9 905.34 2427 3022.3 TRUE FALSE FALSE 2743.155283 1956.062807 2960.968443 2928.767083 2435.434401 2330.877944 2096.769649 1008.400246 2326.958033 3004.323225 0.913069293 0.651082677 0.985569202 0.974850861 0.810643269 0.775841269 0.697917465 0.335649719 0.774536512 1 11.55282432 -4.167694261 0.856152603 0.935458361 1.29E-27 0.646718094 0.113819925 1.014617027 0.489479329 0.016948664 0.925105437 6.80E-05 4.167694261 -0.935458361 QAGAPGGSSGSGGS(ph)PELSALR ddPTM_HeLa_CUDC101_4h_R1 1 QAGAPGGSSGSGGSPELSALR 21 0 Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4 Q9Y2J4 AMOTL2 Angiomotin-like protein 2 1 0 QAGAPGGS(0.001)S(0.013)GS(0.048)GGS(0.638)PELS(0.3)ALR 119.37 9.82E-07 5930400 1508.8 1271.8 1052.3 1024.1 1288.4 1479 1612.8 2481 1372.3 1420.4 TRUE FALSE FALSE 1331.940751 1310.982651 1109.190521 1065.867225 1193.357299 1450.790539 1675.006236 2763.427011 1315.733213 1411.951398 0.943333286 0.928489927 0.785572735 0.754889457 0.845182986 1.027507421 1.186305874 1.95716865 0.931854464 1 10.46347471 -4.167679888 1.760861066 0.931966441 2.479096459 0.934992651 0.083854219 0.25072244 0.632636991 0.014554138 0.69508113 6.80E-05 4.167679888 1.547130018 ASVS(ph)PMDEPVPDSES(ph)PIEK ddPTM_HeLa_CUDC101_4h_R1 2 ASVSPMDEPVPDSESPIEK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 AS(0.192)VS(0.808)PMDEPVPDS(0.075)ES(0.925)PIEK;AS(0.195)VS(0.805)PMDEPVPDS(0.251)ES(0.749)PIEK ; 112.75 0.00074538 12403400 7104.2 6079.2 5503.9 5408.2 6930.6 6342.5 6185.1 6174 6496.9 6193.7 TRUE FALSE FALSE 6271.456445 6266.492946 5801.457482 5628.769772 6419.343446 6221.52738 6423.661379 6876.823204 6229.095032 6156.859597 1.018612873 1.0178067 0.942275423 0.914227405 1.042632749 1.010503371 1.04333407 1.116936824 1.011732513 1 12.58797895 -4.167510239 1.319660309 0.999601612 1.186781169 0.522133565 0.036301228 1.127110167 1.437852387 0.005630921 0.298897463 6.80E-05 4.167510239 0.187179556 LDLLGNLPGS(ph)KR ddPTM_HeLa_CUDC101_4h_R1 1 LDLLGNLPGSKR 12 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 LDLLGNLPGS(1)KR 116.79 0.0082822 26177000 2958 2046.9 2344.9 2444.4 2293.1 2393.8 2023.5 488.88 2071.1 3171 TRUE FALSE FALSE 2611.267724 2109.962563 2471.672387 2544.093198 2123.942581 2348.142253 2101.547073 544.5321231 1985.728381 3152.138751 0.828411415 0.669374901 0.784125504 0.807100638 0.67380999 0.744936197 0.666705129 0.172750049 0.629962238 1 11.62211533 -4.16724072 0.251256309 0.977867053 7.21E-25 0.374275661 0.160684607 4.999819264 0.241771491 0.085820549 1.535391264 6.80E-05 4.16724072 -0.977867053 EEAAEVAS(ph)LDVANIISGSGRPR ddPTM_HeLa_CUDC101_4h_R1 2 EEAAEVASLDVANIISGSGRPR 22 1 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EEAAEVAS(1)LDVANIISGSGRPR;EEAAEVAS(1)LDVANIISGSGRPR ; 124.91 2.56E-07 8196900 3125.9 2267.78 2615.02 2853.65 3323.9 3286.3 3473.3 3867.5 2688.54 3071 TRUE FALSE FALSE 2759.486741 2337.647614 2756.395891 2970.034182 3078.702519 3223.619303 3607.266344 4307.760567 2577.717243 3052.733555 0.903939597 0.765755534 0.902927111 0.972909731 1.00850679 1.055977944 1.181651225 1.411115805 0.844396406 1 11.57588596 -4.166497335 0.891372391 0.935203048 1.74030137 0.848966225 0.067700333 0.783633584 0.41252184 0.011597296 0.637593188 6.82E-05 4.166497335 0.805098323 DHFGLEGDEESTMLEDS(ph)VSPK ddPTM_HeLa_CUDC101_4h_R1 2 DHFGLEGDEESTMLEDSVSPK 21 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 DHFGLEGDEESTMLEDS(0.755)VS(0.245)PK;DHFGLEGDEESTMLEDS(0.784)VS(0.216)PK ; 162.98 8.59E-07 70974000 12149.8 10944.2 9796.3 10026.3 10326.1 10159 8682.5 6764.5 11644.4 13250.6 TRUE FALSE FALSE 10725.61886 11281.37783 10325.91761 10435.21585 9564.364175 9965.234001 9017.386933 7534.543337 11164.4129 13171.78484 0.814287433 0.856480573 0.783942171 0.792240078 0.726125145 0.756559124 0.684598712 0.57202144 0.847600613 1 13.68516323 -4.165855253 0.074885486 1.313331863 8.46E-14 0.731204529 0.055804138 19.98859159 0.23405594 1.16421081 3.411573074 6.83E-05 4.165855253 -1.313331863 ETES(ph)APGSPR ddPTM_HeLa_CUDC101_4h_R1 2 ETESAPGSPR 10 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 0 ET(0.032)ES(0.95)APGS(0.018)PR;ET(0.001)ES(0.999)APGSPR ; 140.78 0.0011891 124096000 8879.7 8480.5 8873.4 8950.5 8490.5 9208.3 9579.9 12019.9 8264.5 9034.3 TRUE FALSE FALSE 7838.835027 8741.774153 9353.122845 9315.540077 7864.17273 9032.66702 9949.399952 13388.19683 7923.833812 8980.563582 0.872866714 0.973410418 1.041485065 1.037300164 0.875688108 1.0058018 1.107881467 1.490796954 0.882331464 1 13.13259027 -4.165546411 1.616401788 0.952531356 1.782576464 0.876422622 0.060231322 0.349848173 0.715454946 0.009717037 0.486779345 6.83E-05 4.165546411 0.830045108 RDS(ph)FDDRGPSLNPVLDYDHGSR ddPTM_HeLa_CUDC101_4h_R1 1 RDSFDDRGPSLNPVLDYDHGSR 22 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 RDS(0.783)FDDRGPS(0.217)LNPVLDYDHGSR 41.256 0.038107 3843900 1691.7 1355 865.75 957.48 1799.5 1545.9 1654.1 2625.7 1363.3 1613.7 TRUE FALSE FALSE 1493.40149 1396.745944 912.5550638 996.530173 1666.75447 1516.414533 1717.899191 2924.599075 1307.104197 1604.101641 0.930989317 0.870734066 0.568888555 0.621238797 1.039057893 0.945335691 1.070941608 1.823200601 0.814851231 1 10.64754984 -4.165089211 2.065267639 0.909200412 2.246254266 0.777453478 0.153761564 0.398839995 1.482011441 0.024120545 1.083646838 6.84E-05 4.165089211 1.337053854 AVSPPHLDGPPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 AVSPPHLDGPPSPR 14 0 P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-4;H3BVD2;P29590-11;P29590-12;P29590-13;H3BT57;H3BUJ5;H3BRN3;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 1 0 AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR ;;; 156.67 4.44E-05 228968000 17199.2 13497 12697 12168.5 14596.6 13023.5 10531.6 8130.8 13133 12500.7 TRUE FALSE FALSE 15183.13585 13912.82657 13383.43823 12664.78403 13519.8379 12775.09844 10937.80734 9056.377406 12591.65218 12426.34528 1.221850472 1.119623369 1.077021274 1.019188164 1.087997926 1.028065626 0.880211123 0.728804584 1.013302938 1 13.60111443 -4.164578467 0.89070377 1.103296827 0.452620914 0.756087107 0.063118076 1.127576319 0.591324657 0.013415671 0.741552569 6.85E-05 4.164578467 -0.650675912 SSSVGSSSSYPISPAVSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSVGSSSSYPISPAVSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 220.69 4.53E-44 0 361.77 253.65 238.09 304.33 421.4 291.96 380.6 357.69 333.44 263.25 FALSE FALSE TRUE 319.363869 261.4646559 250.9618656 316.7418928 390.3141615 286.3913494 395.2798695 398.4079838 319.6954621 261.6841773 1.220417193 0.999161121 0.959025755 1.210397572 1.491546664 1.094415996 1.510522622 1.522476398 1.221684342 1 8.031682884 -1.000000024 0.29963452 1.063838502 5.382983241 0.492762077 0.147804528 28.95874175 0.370463165 0.05574908 67.94680733 0.099999994 1.000000024 4.31914474 NYQQNY(ph)QNS(ph)ESGEKNEGSESAPEGQAQQR ddPTM_HeLa_CUDC101_4h_R1 1 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 H0Y449;P67809;C9J5V9 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 2 0 NY(0.001)QQNY(0.55)QNS(0.55)ES(0.38)GEKNEGS(0.323)ES(0.196)APEGQAQQR 64.27 0.00077408 8292100 4989 4382.1 4423.7 4288.2 4936.9 4896 4724.9 4825.2 5283.8 4779.7 TRUE FALSE FALSE 4404.196983 4517.107307 4662.858603 4463.091331 4572.714723 4802.616957 4907.140976 5374.481264 5065.999528 4751.270132 0.926951502 0.950715742 0.981392022 0.939346997 0.962419436 1.010806968 1.032806142 1.13116727 1.066241108 1 12.21409752 -4.163677359 1.065959109 0.962592111 1.239551893 0.581079768 0.038827844 0.755225044 0.589626216 0.004451401 0.247535316 6.86E-05 4.163677359 0.276959782 QLSSGVS(ph)EIR ddPTM_HeLa_CUDC101_4h_R1 1 QLSSGVSEIR 10 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 QLS(0.224)S(0.224)GVS(0.552)EIR 117.86 0.0054258 4720900000 3954.1 3255.9 2998.9 2826.9 4057.6 4283.1 6035 11303 3347.6 4008.5 TRUE FALSE FALSE 3490.606392 3356.21042 3161.029605 2942.193201 3758.278932 4201.407004 6267.771972 12589.68783 3209.610511 3984.657264 0.876011702 0.842283338 0.79330025 0.738380495 0.943187502 1.054396081 1.572976434 3.159540959 0.805492242 1 11.96023992 -4.162511278 1.602757196 0.905984609 4.404962755 0.985492729 0.084041115 0.123424812 0.245928971 0.01412461 0.720603303 6.88E-05 4.162511278 3.498978146 up DPSASNGGGS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 DPSASNGGGSPAR 13 0 O60504-2;O60504;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 DPSASNGGGS(1)PAR;DPSASNGGGS(1)PAR ; 128.71 0.00048129 3424700 1429.07 806.2 1248.56 1043.73 795.72 826.94 967.63 368.66 1427.06 1278.84 TRUE FALSE FALSE 1261.556581 831.0380664 1316.06093 1086.297821 737.0213209 811.1674973 1004.951813 410.6267642 1368.235983 1271.233403 0.992387848 0.653725795 1.035263019 0.854522717 0.579768687 0.638094858 0.790532888 0.323014455 1.076305877 1 10.31201322 -4.160336049 0.305905093 1.022970913 1.74E-18 0.627407846 0.141196926 3.798429885 0.246901015 0.05877334 1.465751016 6.91E-05 4.160336049 -1.022970913 SVS(ph)PLVWCR ddPTM_HeLa_CUDC101_4h_R1 1 SVSPLVWCR 9 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 S(0.004)VS(0.996)PLVWCR 106.18 0.01212 14593000 1686.4 1465.8 1633.7 1332.6 1735.9 1426 1362.5 1000 1455.7 1356.3 TRUE FALSE FALSE 1488.722748 1510.959561 1722.022764 1386.949188 1607.846115 1398.801426 1415.052081 1113.835958 1395.69543 1348.232667 1.104203143 1.120696447 1.277244503 1.028716498 1.192558343 1.037507442 1.049560744 0.826145208 1.035203688 1 10.39685377 -4.16014011 2.23701948 1.079745265 0.713584217 0.487796004 0.081721398 0.703589931 3.155185982 0.012466073 0.558572089 6.92E-05 4.16014011 -0.366161048 GSYECVCADGFT(ph)SMSDRPGKR ddPTM_HeLa_CUDC101_4h_R1 1 GSYECVCADGFTSMSDRPGKR 21 2 A0A3B3IRR0;A0A3B3IT64;P98164 A0A3B3IRR0 LRP2 Low-density lipoprotein receptor-related protein 2 1 0 GSYECVCADGFT(0.5)S(0.5)MSDRPGKR 59.943 0.01138 20027000 2703.2 1893.6 1954 1694.6 2095.7 2086.7 1384.5 1312.6 1888.9 2237.5 TRUE FALSE FALSE 2386.334994 1951.939572 2059.639151 1763.713113 1941.104386 2046.899674 1437.900629 1462.021078 1811.038743 2224.19125 1.07290009 0.877595203 0.926017108 0.792968281 0.872723686 0.920289419 0.646482459 0.657327052 0.814245961 1 11.11906513 -4.159501343 0.339238856 1.041730213 0.299068828 0.393383034 0.100531576 2.676902492 0.205994843 0.028339135 0.826513975 6.93E-05 4.159501343 -0.742661385 (ac)MET(ph)PSQRR ddPTM_HeLa_CUDC101_4h_R1 3 METPSQRR 8 1 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 MET(0.904)PS(0.096)QRR;MET(0.93)PS(0.07)QRR;MET(0.981)PS(0.019)QRR ;; 61.679 0.00068349 0 612.84 347.23 629.04 735.04 543.93 512.6 496.28 342.27 686.11 632.78 TRUE FALSE FALSE 541.0038242 357.9277447 663.0478051 765.0181083 503.8053676 502.823009 515.4216858 381.2326333 657.8282554 629.0161964 0.860079323 0.569027867 1.054102913 1.216213688 0.800941805 0.799380067 0.819409244 0.606077611 1.045804956 1 9.296953355 -4.159477104 0.979022291 0.925744687 0.410875408 0.267245144 0.165481311 2.564587928 1.647364922 0.025762816 1.45372706 6.93E-05 4.159477104 -0.514869279 HIEPELAGRDS(ph)PIRAEMPGNLQHYGR ddPTM_HeLa_CUDC101_4h_R1 1 HIEPELAGRDSPIRAEMPGNLQHYGR 26 2 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 1 0 HIEPELAGRDS(0.998)PIRAEMPGNLQHY(0.002)GR 47.371 0.019418 18324000 1380.2 1401.8 1588.4 1306.2 1706 1174.4 1193.1 820.09 1261.2 1353.9 TRUE FALSE FALSE 1218.415048 1444.987796 1674.273709 1359.472482 1580.151779 1152.000277 1239.118267 913.4457307 1209.212802 1345.846943 0.90531472 1.073664286 1.244029804 1.010124137 1.174094712 0.855966782 0.920697761 0.678714423 0.898477207 1 10.39429863 -4.156647192 1.391869318 0.999565628 0.496166918 0.450276269 0.11467352 1.296285162 1.83677899 0.017758444 0.973279135 6.97E-05 4.156647192 -0.50339871 QSETVDQNS(ph)DSDEMLAILK ddPTM_HeLa_CUDC101_4h_R1 1 QSETVDQNSDSDEMLAILK 19 0 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 QSETVDQNS(0.788)DS(0.212)DEMLAILK 79.762 0.0043307 3855600 2589.6 2262.5 1978.7 2162.6 2437.2 2030.2 1813.3 1611 2231.8 2342.6 TRUE FALSE FALSE 2286.051014 2332.204943 2085.674507 2250.800176 2257.412612 1991.477318 1883.239588 1794.389728 2139.804259 2328.666111 0.981699782 1.001519682 0.89565202 0.966562001 0.969401582 0.855200884 0.808720314 0.770565484 0.918896981 1 11.18528808 -4.156424408 0.501819007 0.992990084 0.562914907 0.757673208 0.038405238 1.097612708 0.171982894 0.006254116 0.283577196 6.98E-05 4.156424408 -0.430075177 GYYS(ph)PYSVSGSGSTAGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 GYY(0.005)S(0.596)PY(0.093)S(0.268)VS(0.028)GS(0.007)GS(0.004)T(0.043)AGS(0.956)R 116.61 0.0017092 180100000 3691.8 2345.3 2824.9 2885.7 3423 3468.3 4104.6 5074.9 2559 2781 TRUE FALSE FALSE 3259.0528 2417.555913 2977.622639 3003.391319 3170.49211 3402.147956 4262.915797 5652.606103 2453.516937 2764.458488 1.178911825 0.874513372 1.077108827 1.086430247 1.146876368 1.230674279 1.5420437 2.044742624 0.887521714 1 11.43278119 -4.155654862 1.051943236 1.068071191 2.717557899 0.919782048 0.094187709 0.396175132 0.297110215 0.013430493 0.767499579 6.99E-05 4.155654862 1.649486708 up AGVQSVGEKES(ph)LEAAK ddPTM_HeLa_CUDC101_4h_R1 1 AGVQSVGEKESLEAAK 16 1 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 AGVQS(0.004)VGEKES(0.996)LEAAK 86.573 0.0062201 5970600 1694.8 1721.9 1687.8 2062 1613.6 2074.8 2060.1 2372.9 1879 2014.1 TRUE FALSE FALSE 1496.138113 1774.949698 1779.047573 2146.097273 1494.567943 2035.226647 2139.558747 2643.021344 1801.546825 2002.120044 0.747276927 0.886535102 0.88858187 1.071912386 0.746492673 1.016535773 1.068646585 1.320111325 0.899819584 1 10.96731276 -4.153847067 1.095930501 0.884902733 1.609674971 0.642539951 0.097061101 1.134077034 0.929712076 0.017437297 1.001291051 7.02E-05 4.153847067 0.724772238 AAS(ph)LDSVATSR ddPTM_HeLa_CUDC101_4h_R1 2 AASLDSVATSR 11 0 Q9Y2J4;Q9Y2J4-2;Q9Y2J4-4;Q9Y2J4-3 Q9Y2J4 AMOTL2 Angiomotin-like protein 2 1 0 AAS(0.993)LDS(0.007)VATSR;AAS(0.922)LDS(0.078)VATSR ; 163.45 7.49E-05 63545000 1933.03 1417.77 1351.03 1299.92 1350.57 1760.75 1796.43 2929.2 1965.06 1516.58 TRUE FALSE FALSE 1706.443154 1461.449813 1424.070768 1352.936356 1250.941142 1727.166627 1865.718907 3262.648288 1884.059395 1507.559315 1.131924387 0.969414469 0.944620059 0.897434909 0.829779054 1.145670761 1.237575788 2.164192318 1.249741471 1 10.55799905 -4.153843793 1.940730939 1.023131447 2.743492373 0.894158965 0.117735966 0.230589484 0.715279501 0.015663882 0.776381678 7.02E-05 4.153843793 1.720360926 up ANS(ph)TSDSVFTETPS(ph)PVLK ddPTM_HeLa_CUDC101_4h_R1 1 ANSTSDSVFTETPSPVLK 18 0 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 2 0 ANS(0.934)T(0.059)S(0.007)DSVFTET(0.357)PS(0.643)PVLK 149.82 2.28E-07 0 1147.5 942.39 801.97 1271.5 1523.6 1713.3 2354 2888.8 734.59 963.82 TRUE FALSE FALSE 1012.991789 971.4239189 845.326924 1323.357266 1411.207063 1680.621657 2444.794569 3217.649315 704.3098893 958.0871558 1.057306513 1.013920198 0.882306916 1.381249355 1.472942263 1.75414277 2.551745479 3.358409823 0.735120897 1 9.904013092 -4.153232554 0.696858333 1.012662146 5.220259691 0.972475835 0.131513111 0.258252957 0.078826728 0.016325619 0.88448171 7.03E-05 4.153232554 4.207597545 up PVTTT(ph)QHLS(ph)EYK ddPTM_HeLa_CUDC101_4h_R1 1 PVTTTQHLSEYK 12 0 A0A0A0MTS7;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12;A0A0A0MRA3;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9 A0A0A0MTS7 TTN Titin 2 0 PVT(0.02)T(0.162)T(0.827)QHLS(0.991)EYK 104.2 0.00098311 0 9872.7 10079 9988 9107.3 10908 10240 10062 10147 10921 11000 TRUE FALSE FALSE 8715.437072 10389.52204 10527.98149 9478.735059 10103.33857 10044.68906 10450.09471 11302.09346 10470.83176 10934.57151 0.79705337 0.95015356 0.9628161 0.866859305 0.923981206 0.918617529 0.955693115 1.033611006 0.957589582 1 13.41660907 -4.152831835 1.337514752 0.90833645 1.112327054 0.251885937 0.054653 2.136981959 2.745284416 0.011213055 0.630287468 7.03E-05 4.152831835 0.203990604 EKLQEEGGGSDEEET(ph)GSPSEDGMQSAR ddPTM_HeLa_CUDC101_4h_R1 1 EKLQEEGGGSDEEETGSPSEDGMQSAR 27 1 Q13610-2;Q13610 Q13610-2 PWP1 Periodic tryptophan protein 1 homolog 1 0 EKLQEEGGGS(0.05)DEEET(0.546)GS(0.27)PS(0.132)EDGMQS(0.002)AR 55.26 0.0055175 63150000 2748 2188.5 2514.5 2214.2 2558.5 2536.3 2512 2883.8 2452.7 2449.3 TRUE FALSE FALSE 2425.883606 2255.925091 2650.441476 2304.504647 2369.764552 2487.924303 2608.888681 3212.080135 2351.598668 2434.731455 0.996365986 0.926560129 1.088597049 0.946512866 0.973316604 1.021847522 1.071530364 1.319274916 0.965855459 1 11.24954694 -4.152051569 1.763814035 0.994613149 1.495765691 0.848761561 0.041871389 0.29992602 0.735297467 0.005256596 0.273152897 7.05E-05 4.152051569 0.501152542 NVSSFPDDATS(ph)PLQENR ddPTM_HeLa_CUDC101_4h_R1 7 NVSSFPDDATSPLQENR 17 0 P52292;J3QLL0;J3KS65 P52292 KPNA2 Importin subunit alpha-1 1 0 NVSSFPDDAT(0.425)S(0.575)PLQENR;NVSSFPDDAT(0.241)S(0.759)PLQENR;NVSSFPDDAT(0.058)S(0.942)PLQENR;NVSSFPDDAT(0.095)S(0.905)PLQENR;NVSSFPDDAT(0.385)S(0.615)PLQENR;NVSSFPDDAT(0.108)S(0.892)PLQENR;NVSSFPDDAT(0.043)S(0.957)PLQENR ;;;;;; 238.05 1.18E-43 504777700 15141.7 13472.05 11328.48 12257.64 14000.6 11940.5 9817.17 6268.47 14129.6 15510.1 TRUE FALSE FALSE 13366.81288 13887.10789 11940.9319 12757.55954 12967.80363 11712.75486 10195.82154 6982.047287 13547.17191 15417.84524 0.866970233 0.900716519 0.774487726 0.827454119 0.841090531 0.759688185 0.661300031 0.452854934 0.878668303 1 13.91231353 -3.599431303 0.315172075 0.96011088 9.93E-33 0.830620932 0.058947215 3.037834909 0.157810737 0.023737852 1.210110081 0.000251518 3.599431303 -0.96011088 down LQIT(ph)PDSNGEQFSSLIQR ddPTM_HeLa_CUDC101_4h_R1 2 LQITPDSNGEQFSSLIQR 18 0 A0A1B0GVY1;Q96PU5-9;Q96PU5-4;Q96PU5-2;Q96PU5-6;Q96PU5-5;Q96PU5-7;Q96PU5;K7ERN1;Q96PU5-3 A0A1B0GVY1 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 LQIT(0.998)PDS(0.002)NGEQFSSLIQR;LQIT(0.995)PDS(0.005)NGEQFSSLIQR ; 157.74 8.03E-08 0 1971.8 1719.32 1526.68 1584.97 2159.93 1436.75 1454.54 976.42 1473.55 1768.58 TRUE FALSE FALSE 1740.668593 1772.290211 1609.216939 1649.611927 2000.596267 1409.346388 1510.642095 1087.571706 1412.809645 1758.060408 0.990107385 1.008094036 0.915336545 0.938313564 1.137956499 0.801648443 0.859266319 0.618620214 0.803618374 1 10.77976893 -4.151776205 1.003290485 0.992956354 0.376736886 0.52661082 0.094186147 0.843776235 0.566745975 0.010144882 0.586940968 7.05E-05 4.151776205 -0.616219468 IKEEEPDPEEWQLS(ph)GDSTLNTNDLTHLR ddPTM_HeLa_CUDC101_4h_R1 1 IKEEEPDPEEWQLSGDSTLNTNDLTHLR 28 1 A0A494C1G8;A0A494C0Z6;H0Y6K5;A0A494C070;H0Y7L6;Q02447-4;Q02447-3;Q02447-5;Q02447-6;Q02447-2;Q02447 A0A494C1G8 SP3 Transcription factor Sp3 1 0 IKEEEPDPEEWQLS(0.99)GDS(0.01)TLNTNDLTHLR 118.04 4.22E-12 4749000 1708 1253.2 1610 1112.9 1653.8 1669.1 1849.5 3719.6 1611.5 1457 TRUE FALSE FALSE 1507.790829 1291.809607 1697.04147 1158.288872 1531.802469 1637.264698 1920.835835 4143.024229 1545.073288 1448.333699 1.041052093 0.891928157 1.171719936 0.79973895 1.057630897 1.130447147 1.326238446 2.86054535 1.066793715 1 10.50017833 -4.151600522 2.02691416 1.011762842 3.784818045 0.966150805 0.102855382 0.114314417 0.392313034 0.013009992 0.643050298 7.05E-05 4.151600522 2.773055204 up RIS(ph)TSDILSEK ddPTM_HeLa_CUDC101_4h_R1 1 RISTSDILSEK 11 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 RIS(0.793)T(0.199)S(0.009)DILSEK 78.326 0.022903 8021700 2306.1 1887.8 2295.4 2492 2558.2 2771 3352 6509.1 2426.5 2916.9 TRUE FALSE FALSE 2035.782454 1945.96088 2419.496267 2593.634531 2369.486683 2718.147792 3481.287763 7250.069633 2326.478643 2899.550149 0.70210286 0.671125099 0.834438497 0.89449549 0.817191137 0.937437758 1.200630299 2.500411878 0.802358477 1 11.50161338 -4.15065483 1.850859153 0.841591145 3.383792773 0.967131736 0.092271559 0.194607581 0.534094074 0.018179971 0.935379855 7.07E-05 4.15065483 2.542201629 up VLSVAEVAATT(ph)ATPDGGPR ddPTM_HeLa_CUDC101_4h_R1 1 VLSVAEVAATTATPDGGPR 19 0 Q147X3;Q147X3-2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 VLSVAEVAAT(0.052)T(0.803)AT(0.145)PDGGPR 183.88 1.24E-10 4785200 1189 984.57 1013.8 1024.6 1228.5 889.25 937.62 494.21 1147 1267.2 TRUE FALSE FALSE 1049.627222 1014.903435 1068.609095 1066.387617 1137.876003 872.2890378 973.7843175 550.4688687 1099.720175 1259.662638 0.833260582 0.805694639 0.848329594 0.846566044 0.903318054 0.692478297 0.773051679 0.436997059 0.87302754 1 10.29882169 -3.569579841 0.416406794 0.923512624 3.50E-121 0.705072333 0.077887371 3.800569183 0.293534688 0.021135495 1.970178033 0.000269414 3.569579841 -0.923512624 down SSTIFK(ac)TTK ddPTM_HeLa_CUDC101_4h_R1 1 SSTIFKTTK 9 1 O94916-2;O94916;O94916-4;O94916-5 O94916-2 NFAT5 Nuclear factor of activated T-cells 5 0 1 SSTIFK(1)TTK 101.38 0.01087 835660 265.16 204.19 186.05 61.113 168.4 234.73 134.65 166.38 0 260.88 FALSE TRUE FALSE 234.0783468 210.4808519 196.1084258 63.60545229 155.9774675 230.2529163 139.8434956 185.3200267 0 259.3282742 0.902633342 0.811638656 0.756216909 0.245270025 0.601467264 0.887882037 0.539252791 0.714615586 0 1 8.018635699 -6.90499266 1.915175451 0.955441145 0.608566145 0 0.339895385 0.203627272 1.507835826 0.027366237 0.03720932 1.24E-07 6.90499266 -0.346875 QIS(ph)LPDLSQEEPQLK ddPTM_HeLa_CUDC101_4h_R1 2 QISLPDLSQEEPQLK 15 0 H0YBZ4;Q15390-2;Q15390 H0YBZ4 MTFR1 Mitochondrial fission regulator 1 1 0 QIS(0.994)LPDLS(0.006)QEEPQLK;QIS(1)LPDLSQEEPQLK ; 171.09 6.86E-07 9412500 3513.1 2982.5 2406.7 2305.3 3507.9 3454.1 4319.8 7206.5 2831.1 3245.2 TRUE FALSE FALSE 3101.299744 3074.38729 2536.813482 2399.320098 3249.129206 3388.218797 4486.416133 8026.85883 2714.40086 3225.897406 0.961375814 0.953033188 0.786390006 0.743768259 1.007201655 1.050318213 1.390749788 2.488256079 0.841440541 1 11.65548484 -4.149487842 1.59814166 0.948157648 3.383434032 0.9628124 0.093698423 0.190461215 0.367559934 0.01431375 0.779643529 7.09E-05 4.149487842 2.435276384 up KNSS(ph)QDDLFPTSDTPR ddPTM_HeLa_CUDC101_4h_R1 2 KNSSQDDLFPTSDTPR 16 1 Q9H6T3-3;Q9H6T3;Q9H6T3-2 Q9H6T3-3 RPAP3 RNA polymerase II-associated protein 3 1 0 KNS(0.262)S(0.738)QDDLFPTSDTPR;KNS(0.229)S(0.771)QDDLFPTSDTPR ; 115.53 0.0019558 41887000 4324 3533.54 3811 3690.3 4508.5 4205.4 4689.5 6932.7 4838 4199.4 TRUE FALSE FALSE 3817.147275 3642.404179 4017.034188 3840.806385 4175.916937 4125.189002 4870.375586 7721.890545 4638.575592 4174.421782 0.914413414 0.872552983 0.962297151 0.920081052 1.000358171 0.988206084 1.166718612 1.849810812 1.111189965 1 12.02736066 -4.149189364 1.775933068 0.952089435 2.343626084 0.945962653 0.062898667 0.134983265 0.334344949 0.006532506 0.344039245 7.09E-05 4.149189364 1.391536649 AKT(ph)QTPPVS(ph)PAPQPTEER ddPTM_HeLa_CUDC101_4h_R1 2 AKTQTPPVSPAPQPTEER 18 1 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 2 0 AKT(0.5)QT(0.501)PPVS(0.998)PAPQPT(0.001)EER;AKT(0.953)QT(0.049)PPVS(0.993)PAPQPT(0.006)EER ; 96.128 0.0047802 223950000 8892 7972.4 8881.1 8567 9170.5 8610.8 7945.5 6276.1 8723.7 9108.3 TRUE FALSE FALSE 7849.693239 8218.020194 9361.23913 8916.39929 8494.010485 8446.563337 8251.960597 6990.545855 8364.105394 9054.123427 0.866974402 0.907654977 1.033919982 0.984788794 0.938137254 0.932896862 0.91140359 0.772084223 0.923789637 1 13.14435926 -4.14580122 1.922103048 0.94427989 0.680618753 0.57377907 0.045460871 0.856550856 2.547062645 0.008454451 0.441836638 7.15E-05 4.14580122 -0.263661137 APRRRAASMDS(ph)SS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 APRRRAASMDSSSK 14 3 P98177-2;P98177 P98177-2 FOXO4 Forkhead box protein O4 2 0 APRRRAAS(0.314)MDS(0.675)S(0.014)S(0.998)K 60.364 0.0031203 0 1510.9 1088.4 1181.7 1021.1 1324.6 1202.6 1031 501.44 1563 1497.9 TRUE FALSE FALSE 1333.794592 1121.932314 1245.586276 1062.744872 1226.886897 1179.662409 1070.766015 558.5219027 1498.572478 1488.990424 0.895771101 0.753485245 0.83653075 0.713735196 0.823972322 0.792256545 0.719122164 0.375101071 1.006435269 1 10.54011876 -3.484688099 0.216440481 1.009804109 1.94E-15 0.720755029 0.089949674 7.277113411 0.219551045 0.083573875 2.085072669 0.000327576 3.484688099 -1.009804109 down S(ph)SRGQEEISGALPVASPASSR ddPTM_HeLa_CUDC101_4h_R1 4 SSRGQEEISGALPVASPASSR 21 1 Q9UBK8;Q9UBK8-1;H0Y9D5;H0Y8S9 Q9UBK8 MTRR Methionine synthase reductase 1 0 S(0.5)S(0.5)RGQEEISGALPVASPASSR;S(0.5)S(0.5)RGQEEISGALPVASPASSR;S(0.499)S(0.499)RGQEEIS(0.002)GALPVASPASSR;S(0.5)S(0.5)RGQEEISGALPVASPASSR ;;; 220.48 2.77E-34 418383000 9111.5 8325.9 8824.6 7828.5 10229.1 7569.4 7151.1 4597.52 8288.2 8080.1 TRUE FALSE FALSE 8043.463782 8582.41111 9301.684569 8147.780068 9474.519672 7425.026306 7426.920322 5120.883093 7946.556888 8032.039206 1.001422376 1.068522064 1.158072605 1.014409898 1.179590815 0.924426054 0.924661861 0.637557034 0.989357333 1 12.9715506 -4.144875398 1.508572019 1.027949561 0.405874182 0.742535669 0.072467267 0.608061543 1.016670311 0.010742689 0.608240048 7.16E-05 4.144875398 -0.622075379 SSTTVSSFANSKPGSAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 SSTTVSSFANSKPGSAKK 18 2 A0A669KAX4;Q13620-1;Q13620;A0A669KAU9;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 0 1 SSTTVSSFANSK(0.001)PGSAK(0.999)K 91.616 0.020242 1567900 245.45 251.97 223.66 74.043 0 0 174.81 0 356.14 154.79 FALSE TRUE FALSE 216.6787231 259.732897 235.7517361 77.06279358 0 0 181.5524803 0 341.4597585 153.8693022 1.408199816 1.688009846 1.53215575 0.500832801 0 0 1.179913587 0 2.219154527 1 7.265561624 -6.154889835 5.268707102 1.264752647 0.329646929 0.592591051 0.480574456 0.12829249 5.28127127 0.059539648 0.099808438 7.00E-07 6.154889835 -0.935105718 SDTLTDS(ph)QIDRDLHK ddPTM_HeLa_CUDC101_4h_R1 1 SDTLTDSQIDRDLHK 15 1 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 0 S(0.003)DT(0.018)LT(0.187)DS(0.791)QIDRDLHK 64.89 0.029596 15352000 820.26 723.2 835.43 552.36 909.37 1004.2 1137.1 2735.6 694.89 950.95 TRUE FALSE FALSE 724.1103662 745.4809348 880.5958728 574.8876283 842.2875868 985.0465581 1180.958328 3047.009646 666.2463401 945.2937071 0.766016277 0.788623609 0.931557955 0.60815768 0.891032682 1.042053439 1.249303067 3.223347012 0.704803528 1 9.884618841 -4.142862891 2.020219189 0.867672435 4.452934942 0.9684504 0.12831499 0.135706635 0.452111996 0.018945886 0.992570189 7.20E-05 4.142862891 3.585262507 up SSTVVQESSKGTPR ddPTM_HeLa_CUDC101_4h_R1 1 SSTVVQESSKGTPR 14 1 P48169 P48169 GABRA4 Gamma-aminobutyric acid receptor subunit alpha-4 0 0 79.466 0.033736 28408000 2051.1 1320 2482.9 2839.1 2204.3 1982.2 2420.8 1700.7 2921 2552.6 FALSE FALSE TRUE 1810.673167 1360.667635 2617.133084 2954.89077 2041.693181 1944.392838 2514.171067 1894.300814 2800.595144 2537.417022 0.713589115 0.536241234 1.031416224 1.164527054 0.804634462 0.766288245 0.990838733 0.746546901 1.103718908 1 11.30914493 -3.921734467 10.11251094 0.867218696 2.99E-05 0.030659892 0.187470071 62910.38269 324373.5723 0.025917529 1049916.316 0.000119747 3.921734467 -0.867188792 SVNFS(ph)LTPNEIK ddPTM_HeLa_CUDC101_4h_R1 1 SVNFSLTPNEIK 12 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SVNFS(0.693)LT(0.307)PNEIK 116.9 0.0040195 128690000 5862.1 5046 4545.8 4179.1 4885.5 5074.3 4169.8 2345 5997.8 5494.6 TRUE FALSE FALSE 5174.953524 5201.461279 4791.559698 4349.541762 4525.106398 4977.516182 4330.630583 2611.945321 5750.568145 5461.917875 0.947460881 0.952314077 0.877266888 0.796339649 0.828483053 0.911312893 0.792877279 0.478210288 1.052847787 1 12.41519191 -3.479780389 0.410143984 0.976196788 5.66E-33 0.752867399 0.075567769 3.505868804 0.250257996 0.018423563 1.922173627 0.000331299 3.479780389 -0.976196788 down QGTAVEVEAESLDPT(ph)VKPVDVGGDEPEEK ddPTM_HeLa_CUDC101_4h_R1 2 QGTAVEVEAESLDPTVKPVDVGGDEPEEK 29 1 P49321;P49321-3;P49321-4;E9PPR5 P49321 NASP Nuclear autoantigenic sperm protein 1 0 QGTAVEVEAES(0.143)LDPT(0.857)VKPVDVGGDEPEEK;QGTAVEVEAES(0.165)LDPT(0.835)VKPVDVGGDEPEEK ; 103.33 3.23E-09 39611000 2695.3 1882.57 2150.3 2151.53 2652.3 3486.5 4933.5 12137.1 2541.8 3345.5 TRUE FALSE FALSE 2379.36102 1940.56975 2266.551722 2239.278693 2456.645113 3420.000821 5123.786748 13518.7384 2437.025928 3325.600817 0.715468016 0.583524559 0.681546538 0.673345605 0.738707153 1.028385849 1.540710094 4.065051444 0.732807713 1 11.69939929 -4.142784597 1.790103809 0.808088427 5.892868476 0.98286631 0.130766758 0.139801246 0.348050868 0.024191553 1.317402512 7.20E-05 4.142784597 5.08478005 up SSVNCPFSSQDMK ddPTM_HeLa_CUDC101_4h_R1 1 SSVNCPFSSQDMK 13 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 138.76 8.05E-05 0 544.8 611.82 486.23 657.7 864.04 693.22 617.48 645.64 672.2 392.76 FALSE FALSE TRUE 480.9393699 630.669449 512.5170646 684.5238488 800.3014906 679.9979835 641.2964104 719.1370478 644.4916315 390.4238461 1.231839127 1.615345618 1.312719676 1.753283914 2.049827383 1.741691729 1.642564656 1.841939357 1.650748636 1 8.608897361 -7.054472288 0.669136217 1.046149087 1.822849094 0.333323535 0.242844069 0.199598134 0.187583571 0.041105406 0.056699944 8.82E-08 7.054472288 0.776700007 VPEASSEPFDTS(ph)SPQAGR ddPTM_HeLa_CUDC101_4h_R1 1 VPEASSEPFDTSSPQAGR 18 0 H0Y6F5;Q9H4I2 H0Y6F5 ZHX3 Zinc fingers and homeoboxes protein 3 1 0 VPEASSEPFDT(0.015)S(0.66)S(0.325)PQAGR 158.15 2.17E-05 3081300 1436.2 1306.9 1525.4 1312.1 1436.9 1450 1409.6 1444.4 1756.8 1455.8 TRUE FALSE FALSE 1267.850813 1347.16404 1607.867738 1365.613109 1330.90275 1422.343666 1463.968744 1608.824658 1684.38396 1447.140837 0.876107412 0.930914259 1.111065141 0.943662893 0.919677419 0.982864715 1.011628383 1.111726389 1.163939209 1 10.49898962 -4.142604859 1.264085623 0.951200687 1.217248838 0.010860411 0.08984352 1.641953011 1.824782728 0.010240478 0.605696317 7.20E-05 4.142604859 0.266048151 SYSSSSSS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 3 SYSSSSSSPER 11 0 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 SYSS(0.004)S(0.003)S(0.008)S(0.09)S(0.895)PER;SYSSSSS(0.016)S(0.984)PER;SYSS(0.002)S(0.004)S(0.008)S(0.084)S(0.901)PER ;; 163.12 7.98E-05 130781000 18098.4 12562.8 16479.6 15821.7 15628.2 12252 12754.5 8371.5 19378.5 19460.3 TRUE FALSE FALSE 15976.93299 12949.84498 17370.53702 16466.97731 14475.33882 12018.31351 13246.44534 9324.477721 18579.71003 19344.54927 0.825913944 0.669431208 0.897955118 0.851246368 0.748290313 0.621276482 0.684763711 0.482020935 0.960462287 1 14.23963949 -3.425057784 0.144930187 1.064889508 1.22E-18 0.733184849 0.079689136 13.71838268 0.25704069 0.25694517 2.825479452 0.000375787 3.425057784 -1.064889508 down SSWLEEDDDPVVAR ddPTM_HeLa_CUDC101_4h_R1 2 SSWLEEDDDPVVAR 14 0 O15460-2;O15460 O15460-2 P4HA2 Prolyl 4-hydroxylase subunit alpha-2 0 0 ; ; 208.74 6.40E-23 14885500 3013.8 2378.09 2442.62 1986 2677 2782.9 2964.3 2278.91 2581.9 2485.61 FALSE FALSE TRUE 2660.526933 2451.356134 2574.675426 2066.997664 2479.523043 2729.820819 3078.634044 2538.331903 2475.472989 2470.825481 1.076776548 0.992120307 1.042030465 0.836561578 1.003520104 1.104821381 1.245994129 1.027321404 1.001880954 1 11.2707774 -5.131224143 4.573734204 1.017035704 1.144488545 0.347985284 0.079009016 0.20506812 6.697784178 0.011372837 0.030474736 7.39E-06 5.131224143 0.127452841 YESSS(ph)YTDQFSR ddPTM_HeLa_CUDC101_4h_R1 2 YESSSYTDQFSR 12 0 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 YESS(0.002)S(0.989)YT(0.009)DQFSR;YES(0.001)S(0.058)S(0.856)YT(0.083)DQFS(0.002)R ; 199.96 1.99E-27 0 2249.46 2082.08 2014.19 1907.76 2167.64 2108.66 2156.27 2498.68 1981.19 2006.79 TRUE FALSE FALSE 1985.781709 2146.226417 2123.083204 1985.566699 2007.737516 2068.440824 2239.438056 2783.119631 1899.52451 1994.853524 0.99545239 1.075881708 1.064280248 0.995344608 1.006458616 1.036888573 1.122607765 1.395149868 0.952212524 1 10.9620671 -4.142586932 1.563545906 1.009136838 1.62806121 0.92045259 0.033760892 0.255699753 0.46262311 0.004630023 0.262598058 7.20E-05 4.142586932 0.618924372 GYYS(ph)PYSVSGSGST(ph)AGSR ddPTM_HeLa_CUDC101_4h_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 GYYS(0.864)PYS(0.032)VS(0.103)GS(0.001)GS(0.2)T(0.711)AGS(0.088)R 154.52 0.00017233 11805000 4139.4 3868.2 3924.9 3934.5 4477.5 4718.9 5340.4 6312.5 3593 4260.5 TRUE FALSE FALSE 3654.185807 3987.374657 4137.091966 4094.965916 4147.203745 4628.894845 5546.381017 7031.089484 3444.895019 4235.158357 0.862821529 0.94149364 0.976844693 0.966897946 0.979232273 1.09296854 1.309604164 1.660171567 0.813404064 1 12.0482002 -4.141013425 0.957959574 0.93712045 2.191875984 0.953122019 0.051374935 0.347938082 0.20827433 0.007967643 0.475400586 7.23E-05 4.141013425 1.254755534 DPCS(ph)PIVGGAPR ddPTM_HeLa_CUDC101_4h_R1 1 DPCSPIVGGAPR 12 0 J3KN11 J3KN11 FKBP11 1 0 DPCS(1)PIVGGAPR 77.387 0.040644 4096200 4072.5 4312.2 3488.1 3004.1 4860.1 4479.6 4236.5 3387.8 4136.5 4601 TRUE FALSE FALSE 3595.127724 4445.053771 3676.677237 3126.620183 4501.580106 4394.159094 4399.903224 3773.453458 3965.991719 4573.633047 0.786055131 0.97188684 0.803885489 0.683618504 0.984246016 0.960758996 0.962014919 0.825045083 0.867142527 1 12.1591249 -4.139389996 16.4391069 0.894210189 0.824707003 0.037178349 0.099647082 30972.80968 4126190.563 0.015576939 882.4984668 7.25E-05 4.139389996 -0.069503186 NST(ph)ELAPPLPVR ddPTM_HeLa_CUDC101_4h_R1 1 NSTELAPPLPVR 12 0 Q9H7D0 Q9H7D0 DOCK5 Dedicator of cytokinesis protein 5 1 0 NS(0.275)T(0.725)ELAPPLPVR 163.62 0.00034707 12925000 1796.4 1507.3 1159.8 1330.2 1206.1 1541.3 1051.2 395.37 1202.7 1612.3 TRUE FALSE FALSE 1585.828715 1553.738126 1222.502296 1384.451306 1117.128406 1511.90227 1091.745136 440.3773227 1153.124197 1602.709968 0.989467057 0.969444352 0.762772005 0.86381899 0.697024682 0.943341154 0.681186963 0.27477044 0.719484011 1 10.64629766 -4.135489929 0.499903756 0.987519156 1.28E-32 0.533091981 0.142794751 1.885477469 0.289121159 0.023898997 1.119583246 7.32E-05 4.135489929 -0.987519156 QMNMS(ph)PPPGNAGPVIMSIEEK ddPTM_HeLa_CUDC101_4h_R1 2 QMNMSPPPGNAGPVIMSIEEK 21 0 Q86U42-2;Q86U42;B4DEH8;G3V4T2;Q92843-2 Q86U42-2 PABPN1 Polyadenylate-binding protein 2 1 0 QMNMS(1)PPPGNAGPVIMSIEEK;QMNMS(1)PPPGNAGPVIMSIEEK ; 81.765 0.00084514 16062100 10663.5 8602 8389.2 8352 8746.2 8165.4 6887.4 4663.7 10603 10722.4 TRUE FALSE FALSE 9413.540695 8867.017424 8842.745528 8692.63066 8101.010251 8009.658599 7153.049325 5194.596757 10165.93985 10658.62269 0.883185471 0.831910246 0.829633039 0.815549149 0.760042877 0.751472196 0.67110447 0.487360976 0.953776126 1 13.3797334 -3.411130698 0.225282694 1.00074437 3.48E-15 0.921917171 0.038617235 3.282514214 0.101077465 0.033410098 0.976154173 0.000388034 3.411130698 -1.00074437 down SEVSS(ph)PIQR ddPTM_HeLa_CUDC101_4h_R1 2 SEVSSPIQR 9 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;Q9HAU0-5;Q9HAU0-3;H0YG48 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 SEVS(0.18)S(0.82)PIQR;SEVS(0.128)S(0.872)PIQR ; 147.73 0.00095583 219270000 10061.6 9330.5 9440.8 9055.3 10774.6 9015.4 8474.3 5232.1 9858.9 9421.7 TRUE FALSE FALSE 8882.1945 9617.961646 9951.198205 9424.614274 9979.779224 8843.446266 8801.15659 5827.701115 9452.511969 9365.659309 0.948378988 1.02693909 1.062519773 1.006294801 1.065571456 0.944241721 0.939726323 0.622241416 1.009273523 1 13.19316484 -4.133688429 2.036433015 0.992338393 0.421984787 0.889384713 0.040340615 0.303413108 1.007038725 0.006449164 0.358386199 7.35E-05 4.133688429 -0.570353606 ICNGGLSPGNPGDS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ICNGGLSPGNPGDSK 15 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 0 ICNGGLS(0.05)PGNPGDS(0.95)K 213.94 2.72E-43 0 5118.2 4610.1 4047.2 4168.7 4117.8 4277.3 3211.3 2327.4 4837.5 4045.1 TRUE FALSE FALSE 4518.252355 4752.131717 4266.003874 4338.717605 3814.038098 4195.717629 3335.160917 2592.341808 4638.096202 4021.039565 1.123652797 1.181816702 1.060920641 1.079003958 0.94852041 1.043441021 0.829427531 0.644694429 1.153456992 1 11.97335282 -4.131067601 0.973618154 1.069161715 0.31666373 0.828977774 0.064240173 0.781479303 0.478784638 0.01058513 0.652562431 7.39E-05 4.131067601 -0.752497985 S(ph)KSDGEAKPEPSPSPR ddPTM_HeLa_CUDC101_4h_R1 1 SKSDGEAKPEPSPSPR 16 2 P26358;K7ERQ1;K7ENQ6;K7EJL0 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 S(0.977)KS(0.023)DGEAKPEPSPSPR 121.95 0.00045157 22454000 1242.3 1432.6 1120 1414.7 1656.9 1804.9 1996.4 2941.8 2082.6 2213.2 TRUE FALSE FALSE 1096.679477 1476.736708 1180.550588 1472.397581 1534.673788 1770.47454 2073.401817 3276.682621 1996.754347 2200.035788 0.498482563 0.671233039 0.536605174 0.669260741 0.697567647 0.804748063 0.94244004 1.489376963 0.907600848 1 11.10331128 -4.130800269 1.534268419 0.723365004 1.973794033 0.725882962 0.14308318 0.839537676 1.421492435 0.028657352 1.729491661 7.40E-05 4.130800269 1.250429029 SNS(ph)SEALLVDR ddPTM_HeLa_CUDC101_4h_R1 1 SNSSEALLVDR 11 0 Q96HB5-2;Q96HB5;Q96HB5-5;Q96HB5-3;Q96HB5-4 Q96HB5-2 CCDC120 Coiled-coil domain-containing protein 120 1 0 S(0.002)NS(0.918)S(0.081)EALLVDR 159.41 0.00013617 18802000 1796.3 1684.2 1286.7 1555.3 1779.4 1257 1421.1 1044 1663.7 1574.7 TRUE FALSE FALSE 1585.740437 1736.088206 1356.262894 1618.731857 1648.137207 1233.024819 1475.912303 1162.84474 1595.121582 1565.333614 1.013036724 1.109085111 0.866436957 1.034113011 1.052898367 0.787707367 0.94287396 0.742873423 1.019029788 1 10.61225445 -4.129856847 0.670926837 1.010102079 0.578506624 0.503864132 0.080316806 2.082679574 0.575089425 0.012637772 0.711783452 7.42E-05 4.129856847 -0.431595454 STAGDTHLGGEDFDNR ddPTM_HeLa_CUDC101_4h_R1 6 STAGDTHLGGEDFDNR 16 0 P11142;E9PKE3;P11142-2;E9PN89;P54652 P11142;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 0 ;;;;; ;;;;; 144.18 0.00024934 978028600 27801.3 22476 21929.4 21358.4 27964 25160.8 23441.4 25870.6 25877.8 26579.8 FALSE FALSE TRUE 24542.47376 23168.45892 23114.9697 22229.48787 25901.15143 24680.89966 24345.54265 28815.60453 24811.10613 26421.70217 0.928875574 0.876872306 0.874847864 0.841334435 0.980298365 0.934114672 0.921422189 1.090603639 0.939042684 1 14.68943579 -4.256420677 23.98243947 0.94189829 1.090603751 0.474852668 0.04934086 260.5123825 1244811.603 0.008243066 0.090495771 5.54E-05 4.256420677 0.148705461 STALK(ac)ILAGK ddPTM_HeLa_CUDC101_4h_R1 1 STALKILAGK 10 1 D6R9I9;P61221;D6RGF4;H0Y990 D6R9I9 ABCE1 ATP-binding cassette sub-family E member 1 0 1 STALK(1)ILAGK 117.67 0.0035465 215050 75.991 0 147.53 141.45 213.64 118.49 182.91 205.07 0 137.84 FALSE TRUE FALSE 67.08345017 0 155.5059181 147.2189424 197.8802028 116.2300007 189.9649 228.4143399 0 137.0201215 0.489588313 0 1.134913006 1.074433016 1.444168934 0.848269578 1.386401485 1.667013117 0 1 7.09824396 -6.545332035 24.97361134 0.689226199 1.257452412 0.499039428 0.388157021 186.5920657 207535.7656 0.056688741 0.08017301 2.85E-07 6.545332035 0.568226214 NLVYDQS(ph)PNR ddPTM_HeLa_CUDC101_4h_R1 1 NLVYDQSPNR 10 0 I3L2T8;I3L533;I3L2R9;Q9NXR1;Q9NXR1-1 I3L2T8 NDE1 Nuclear distribution protein nudE homolog 1 1 0 NLVYDQS(1)PNR 117.86 0.0054258 23754000 2008.5 2173.2 1813.2 1508.4 1878.7 1846.7 1489.5 1157.7 1828.2 1773.3 TRUE FALSE FALSE 1773.066675 2240.153716 1911.227077 1569.919072 1740.112044 1811.477274 1546.950514 1289.487888 1752.840822 1762.752333 1.005851271 1.270827259 1.084228931 0.890606719 0.987156285 1.0276414 0.877576779 0.731519604 0.994377253 1 10.78361407 -4.128130138 1.154664698 1.023094626 0.514882157 0.513768995 0.093234674 1.386769257 1.231302741 0.014484956 0.910774244 7.45E-05 4.128130138 -0.508212469 VDGIPNDS(ph)SDSEMEDKTTANLAALK ddPTM_HeLa_CUDC101_4h_R1 2 VDGIPNDSSDSEMEDKTTANLAALK 25 1 Q9H6S0 Q9H6S0 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 0 VDGIPNDS(0.333)S(0.333)DS(0.333)EMEDKT(0.001)T(0.001)ANLAALK;VDGIPNDS(0.365)S(0.365)DS(0.268)EMEDKT(0.001)T(0.001)ANLAALK ; 85.248 1.97E-05 51060000 5995.9 5190.1 3724.9 4436.7 5421.8 4694.7 4398.5 3477.9 4585.9 4250.3 TRUE FALSE FALSE 5293.069691 5350.000829 3926.279361 4617.647803 5021.844616 4605.156419 4568.151618 3873.810078 4396.867261 4225.019027 1.252791918 1.266266683 0.929292705 1.092929469 1.188596923 1.089972942 1.081214449 0.916873996 1.040673955 1 12.04474212 -4.127641681 1.816756413 1.120461127 0.796615679 0.233404324 0.101178455 1.641354877 4.091741465 0.017051775 1.009971219 7.45E-05 4.127641681 -0.323845448 LQAALDDEEAGGRPAMEPGNGS(ph)LDLGGDSAGR ddPTM_HeLa_CUDC101_4h_R1 3 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR 32 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1X7SBS1 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 LQAALDDEEAGGRPAMEPGNGS(0.999)LDLGGDS(0.001)AGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR ;; 80.608 2.00E-07 578757000 3794.42 3583.58 3336.49 3544.87 4378.36 4484.01 4940.76 7525.53 4490.9 5033.6 TRUE FALSE FALSE 3349.64384 3693.985852 3516.870742 3689.445121 4055.377106 4398.48498 5131.326768 8382.205916 4305.783201 5003.659923 0.669438749 0.738256778 0.702859666 0.737349296 0.810482161 0.879053542 1.025514693 1.675214952 0.860526748 1 12.28876802 -4.122143767 1.656607285 0.812361321 2.22190966 0.893448823 0.091187273 0.486435734 0.966269144 0.019497401 1.212640762 7.55E-05 4.122143767 1.409548339 VPDMVIPAPGS(ph)Y(ph)DVHK ddPTM_HeLa_CUDC101_4h_R1 1 VPDMVIPAPGSYDVHK 16 0 H0YAZ7;Q8N412 H0YAZ7 STPG2 Sperm-tail PG-rich repeat-containing protein 2 2 0 VPDMVIPAPGS(1)Y(1)DVHK 49.708 0.037124 63760000 4453.2 4164 4446.2 4379.4 5023 4655.3 4748.8 4694.1 4906.6 5040.3 TRUE FALSE FALSE 3931.202647 4292.287904 4686.575021 4558.010861 4652.463297 4566.507909 4931.962807 5228.45737 4704.347871 5010.320071 0.78462106 0.856689362 0.935384358 0.909724488 0.928576065 0.911420397 0.984360827 1.043537597 0.938931606 1 12.29068705 -4.121386036 0.895763373 0.896306784 1.162470613 0.39615656 0.053903319 2.902731665 1.467232268 0.012749477 0.798894285 7.56E-05 4.121386036 0.266163828 AGS(ph)IVLK ddPTM_HeLa_CUDC101_4h_R1 1 AGSIVLK 7 0 B1ALC0;O15511;O15511-2 B1ALC0 ARPC5 Actin-related protein 2/3 complex subunit 5 1 0 AGS(1)IVLK 85.731 0.038296 4566800 3535.2 3337.8 2922.4 2946.6 3692.4 3479.3 3631.2 4188 3552.2 3498 TRUE FALSE FALSE 3120.809215 3440.633662 3080.393784 3066.775084 3420.019008 3412.938149 3771.2566 4664.744992 3405.776812 3477.19374 0.897508004 0.989485752 0.885885002 0.881968424 0.98355722 0.981520848 1.084569018 1.341525765 0.979461332 1 11.76370774 -4.120898228 1.342645995 0.944801912 1.615820498 0.89381771 0.041516868 0.464487777 0.570642909 0.00717241 0.461330624 7.57E-05 4.120898228 0.671018586 HTEVLPAEEENDS(ph)LGADGTHGAGAMESAAGVLIK ddPTM_HeLa_CUDC101_4h_R1 1 HTEVLPAEEENDSLGADGTHGAGAMESAAGVLIK 34 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 HTEVLPAEEENDS(0.526)LGADGT(0.212)HGAGAMES(0.262)AAGVLIK 57.496 0.00074295 5587900 2574.7 1873.4 1977.6 1821 2771.4 2279 2727.3 5032.9 2254.5 1998.4 TRUE FALSE FALSE 2272.897569 1931.117233 2084.515038 1895.268251 2566.959343 2235.531872 2832.492875 5605.824992 2161.568556 1986.513428 1.144164211 0.972113859 1.049333475 0.954067677 1.292193301 1.125354523 1.425861429 2.821941656 1.088121794 1 10.95602283 -4.118955742 1.813082199 1.067577175 3.906206294 0.968733071 0.093738537 0.159919113 0.389011428 0.013905468 0.867654947 7.60E-05 4.118955742 2.83862912 up MVIPNQPPLTATK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 MVIPNQPPLTATKK 14 1 A0A087WZF1;Q93052;C9JXK9;C9JUT4 A0A087WZF1 LPP Lipoma-preferred partner 0 1 ; MVIPNQPPLTATK(1)K;MVIPNQPPLTATK(1)K 218.62 2.56E-21 829300 490.32 546.2 517.3 553.29 779.2 866.38 892.78 1068.55 363.97 427.14 FALSE TRUE FALSE 432.8454329 563.0277746 545.2668027 575.8555577 721.7199684 849.855245 927.2148237 1190.189413 348.9670025 424.5993523 1.019420851 1.326021275 1.28419132 1.356232775 1.699767003 2.001546259 2.183740551 2.80308815 0.82187361 1 8.72995836 -3.410410887 0.367240709 0.96847367 5.688513316 0.976387053 0.090528516 0.866525561 0.05064257 0.022550279 2.058597832 0.000388677 3.410410887 4.720039645 up STAYEDYYYHPPPR ddPTM_HeLa_CUDC101_4h_R1 2 STAYEDYYYHPPPR 14 0 O43390;B4DT28;O43390-4;O43390-3;O43390-2;A0A286YEZ8 O43390 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 0 ; ; 105.03 0.0046293 42781000 3554.6 3555.8 3741.7 3480.7 3785.6 3558.6 3010.8 3206.1 3246.6 4411.6 FALSE FALSE TRUE 3137.935176 3665.349983 3943.98762 3622.657991 3506.34383 3490.725634 3126.927565 3571.069464 3112.773774 4385.359607 0.715547973 0.835815147 0.899353297 0.826080029 0.79955674 0.7959953 0.713037891 0.814316221 0.709810381 1 12.09847944 -9.461424073 1.143618615 1.002358643 0.793765425 0 0.102956957 0.256836462 0.589924203 0.043283655 0.010212709 3.46E-10 9.461424073 -0.208593217 GYYSPYSVSGS(ph)GS(ph)TAGSR ddPTM_HeLa_CUDC101_4h_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 GYY(0.002)S(0.018)PY(0.156)S(0.232)VS(0.238)GS(0.553)GS(0.554)T(0.241)AGS(0.006)R 115.26 0.0023322 10097000 3641.7 2315.7 2698.1 2696 3384.3 3272.6 3803.7 4397.7 2404.8 2521.6 TRUE FALSE FALSE 3214.825446 2387.043972 2843.967447 2805.954533 3134.646931 3210.180608 3950.409983 4898.316392 2305.673126 2506.601411 1.28254354 0.952302972 1.134591018 1.119425897 1.250556597 1.280690497 1.576002457 1.954166454 0.919840353 1 11.29151689 -4.117269726 0.902416668 1.119845298 2.615914986 0.870649571 0.107568045 0.732957941 0.374646939 0.018001747 1.143447151 7.63E-05 4.117269726 1.496069688 S(ph)GIIPT(ph)S(ph)PT(ph)PY(ph)TYNK ddPTM_HeLa_CUDC101_4h_R1 1 SGIIPTSPTPYTYNK 15 0 F8VRP2;R4GN33;Q8IW41-2;Q8IW41 F8VRP2 MAPKAPK5 MAP kinase-activated protein kinase 5 5 0 S(0.999)GIIPT(0.997)S(0.932)PT(0.595)PY(0.529)T(0.419)Y(0.529)NK 45.864 0.0032589 0 471.34 443.52 306.53 337.07 530.11 518.62 433.93 435.05 509.55 315.24 TRUE FALSE FALSE 416.0902397 457.1843255 323.101939 350.8171715 491.0048414 508.7281876 450.6668255 484.5743335 488.5461333 313.3649385 1.32781364 1.45895175 1.031072399 1.119516348 1.566878681 1.623436847 1.438153316 1.546357853 1.559032532 1 8.291699959 -4.115713284 0.045472562 6.82E-11 3.060162147 0 0.228040614 165.5155696 1.145826686 27.2155655 53.43059077 7.66E-05 4.115713284 3.060162147 VIPS(ph)SGSK ddPTM_HeLa_CUDC101_4h_R1 1 VIPSSGSK 8 0 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;H0Y390;Q9UPN3-5;H0Y314 A0A590UJG2 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 VIPS(0.88)S(0.106)GS(0.013)K 94.85 0.023559 4175200 4487.3 2629.3 3961.3 4445.3 3230.5 3195.1 2982.1 1111.5 3972.8 4771.5 TRUE FALSE FALSE 3961.305496 2710.305617 4175.45986 4626.598548 2992.192451 3134.158791 3097.120596 1238.028667 3809.039502 4743.118906 0.83516892 0.571418442 0.880319457 0.975433811 0.630849133 0.660780143 0.652971316 0.261015735 0.803066416 1 12.21162032 -4.113314617 0.307280375 0.951078589 6.57E-36 0.524476782 0.144269203 4.461167671 0.285613398 0.060952538 1.615060986 7.70E-05 4.113314617 -0.951078589 (ac)S(ph)REMQDVDLAEVKPLVEK ddPTM_HeLa_CUDC101_4h_R1 2 SREMQDVDLAEVKPLVEK 18 2 Q92597;E5RJ98;E5RI76;E5RIR1;E5RGM5;E5RIM2 Q92597 NDRG1 Protein NDRG1 1 0 S(1)REMQDVDLAEVKPLVEK;S(1)REMQDVDLAEVKPLVEK ; 56.039 0.002139 17280700 3684.4 3606.6 3980.8 3746.7 5168.3 4824 5052.6 5788.9 4594.8 5437.1 TRUE FALSE FALSE 3252.520217 3717.715071 4196.014089 3899.506621 4787.044806 4731.990237 5247.480475 6447.884976 4405.400399 5404.759887 0.601788106 0.687859433 0.77635532 0.721494886 0.885709061 0.87552275 0.970899833 1.19300119 0.815096413 1 12.40001481 -4.112427756 0.986690513 0.791432752 1.495033074 0.616771063 0.101281299 1.958845429 1.206823599 0.023818841 1.561055851 7.72E-05 4.112427756 0.703600322 STEIK(ac)WK ddPTM_HeLa_CUDC101_4h_R1 1 STEIKWK 7 1 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;Q01105-2 Q01105;Q01105-2 SET Protein SET 0 1 STEIK(1)WK 98.458 0.021029 965340 726.13 743.15 475.33 574.92 414.52 788.3 527.41 520.5 608.64 662.07 FALSE TRUE FALSE 641.0141421 766.0455707 501.0277776 598.3677226 383.9416854 773.2644909 547.7523804 579.7516161 583.5516016 658.1319782 0.973990268 1.163969532 0.761287696 0.909191078 0.583380991 1.174938335 0.832283491 0.880904796 0.886678692 1 9.362233113 -6.744208033 24.99873898 1.000593362 0.860261526 0.188241794 0.15147926 304.697591 442045.388 0.021525115 0.030400264 1.80E-07 6.744208033 -0.140331836 SASSSAAGS(ph)PGGLTSLQQQK ddPTM_HeLa_CUDC101_4h_R1 2 SASSSAAGSPGGLTSLQQQK 20 0 E5RJ10;E5RHB8;E5RJX6;E5RG91;Q8NEZ2-3;Q8NEZ2-2;Q8NEZ2 E5RJ10 VPS37A Vacuolar protein sorting-associated protein 37A 1 0 SASS(0.001)S(0.003)AAGS(0.995)PGGLT(0.002)SLQQQK;SAS(0.001)S(0.008)S(0.031)AAGS(0.959)PGGLTSLQQQK ; 154.39 1.29E-05 19424700 4075.6 3569.9 3919.3 4402.9 4890 3668 3446.3 1982.38 4820.2 4429 TRUE FALSE FALSE 3597.864346 3679.884388 4131.189213 4582.469293 4529.274442 3598.039011 3579.224945 2208.046126 4621.509316 4402.656111 0.817203128 0.835832801 0.938340199 1.040841978 1.028759532 0.817242801 0.812969456 0.501525913 1.049709357 1 12.10415845 -4.111806125 1.466974454 0.922140456 0.217068363 0.705487785 0.0861481 0.807615144 1.191358838 0.013754836 0.915383593 7.73E-05 4.111806125 -0.705072093 PASVPPSPSLS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 PASVPPSPSLSR 12 0 P13807-2;P13807 P13807-2 GYS1 "Glycogen [starch] synthase, muscle" 1 0 PASVPPS(0.023)PS(0.154)LS(0.823)R 97.69 0.0016255 0 826.43 781.21 926.18 1218.6 1236.1 957.7 1968.1 3506.2 697.83 884.8 TRUE FALSE FALSE 729.5571282 805.2781541 976.2520923 1268.299775 1144.915366 939.4334681 2044.010276 3905.331635 669.065152 879.5371702 0.829478449 0.915570349 1.109961154 1.442008159 1.301724821 1.068099791 2.323961221 4.440212157 0.760701395 1 9.780600739 -4.110795425 1.310187729 0.978917163 6.970235375 0.961742241 0.207821437 0.247214287 0.282733979 0.032122733 2.159886111 7.75E-05 4.110795425 5.991318212 up SSSQPS(ph)SCCSDPSKPGGNVEGATQSLAEQMR ddPTM_HeLa_CUDC101_4h_R1 1 SSSQPSSCCSDPSKPGGNVEGATQSLAEQMR 31 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 S(0.016)S(0.016)S(0.165)QPS(0.645)S(0.066)CCS(0.07)DPS(0.02)KPGGNVEGAT(0.001)QS(0.001)LAEQMR 53.674 0.030611 12480000 772.96 663.12 900.06 470.78 472.68 702.79 819.43 1977.7 757.44 309.67 TRUE FALSE FALSE 682.3548005 683.5499412 948.7199661 489.9804433 437.8113381 689.3854517 851.0356896 2202.833374 726.2180026 307.8280691 2.21667505 2.220557545 3.081980045 1.591734129 1.422259313 2.239514589 2.764646162 7.15605104 2.359167586 1 8.265980978 -4.110744993 1.819102499 1.754105012 10.59585676 0.869017516 0.5887021 0.37684479 0.906479342 0.098145807 6.432397965 7.75E-05 4.110744993 8.841751751 up LNNS(ph)SPNSSGGVK ddPTM_HeLa_CUDC101_4h_R1 2 LNNSSPNSSGGVK 13 0 O00472;H0Y8G1;O00472-2 O00472 ELL2 RNA polymerase II elongation factor ELL2 1 0 LNNS(0.971)S(0.028)PNS(0.001)SGGVK;LNNS(0.841)S(0.158)PNSSGGVK ; 184.96 5.77E-11 36472000 8001.9 6300 7674.9 7304.8 7547.5 7012.3 5980.7 4113.6 8241.9 7452.1 TRUE FALSE FALSE 7063.929412 6494.095533 8089.828309 7602.721318 6990.735962 6878.552061 6211.377602 4581.875596 7902.165394 7407.774578 0.953583203 0.876659443 1.09207269 1.026316505 0.943702577 0.928558501 0.838494414 0.618522547 1.066739452 1 12.85482448 -4.11007878 1.191124965 0.980607613 0.351657734 0.791426279 0.059181783 0.634065538 0.586922715 0.007942245 0.535004356 7.76E-05 4.11007878 -0.628949879 GYALVPIIVNSST(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 GYALVPIIVNSSTPK 15 0 F8WF45;A0A2R8Y7M0;P82094;P82094-2 F8WF45 TMF1 TATA element modulatory factor 1 0 GYALVPIIVNS(0.042)S(0.403)T(0.555)PK;GYALVPIIVNS(0.001)S(0.078)T(0.921)PK ; 188.63 2.45E-10 40038000 8537.7 7750.8 6840 6476.6 7550.2 7138.1 5903.4 3241.1 7229.7 6742.3 TRUE FALSE FALSE 7536.923748 7989.592961 7209.79109 6740.743742 6993.236788 7001.952635 6131.096116 3610.053723 6931.688706 6702.1965 1.124545326 1.192085753 1.075735558 1.005751434 1.043424613 1.044725059 0.914789072 0.538637404 1.034241343 1 12.71041827 -4.109189134 1.534554228 1.067312455 0.174309132 0.897715086 0.053829094 0.429523566 0.697920624 0.009561233 0.642153004 7.78E-05 4.109189134 -0.893003324 STFREESPLR ddPTM_HeLa_CUDC101_4h_R1 2 STFREESPLR 10 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 0 0 ; ; 117.53 0.00052929 0 6461.1 5455.8 4819.1 5720.2 5874.8 5536.1 5279.8 5618.6 5726.5 6988.9 FALSE FALSE TRUE 5703.739652 5623.886731 5079.635123 5953.494481 5441.427708 5430.508116 5483.443655 6258.198713 5490.451246 6947.329712 0.820997403 0.809503358 0.731163675 0.856947162 0.783240171 0.781668402 0.789287954 0.900806349 0.790296628 1 12.76224285 -8.960165043 0.665918132 1.008897846 0.803253655 0 0.077367113 0.309062175 0.240630346 0.034744799 0.009508675 1.10E-09 8.960165043 -0.205644191 TNS(ph)MGSATGPLPGTK ddPTM_HeLa_CUDC101_4h_R1 2 TNSMGSATGPLPGTK 15 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 0 T(0.005)NS(0.956)MGS(0.035)AT(0.004)GPLPGTK;TNS(0.999)MGSATGPLPGTK ; 114.54 0.0033691 83716000 5399 4297.6 4745.7 4693.3 5639.1 5642.9 5389.1 5749.3 4901.9 6272.1 TRUE FALSE FALSE 4766.137404 4430.003962 5002.266897 4884.71306 5223.114828 5535.271084 5596.959392 6403.777073 4699.841607 6234.79327 0.764441931 0.710529407 0.802314797 0.783460309 0.83773665 0.887803467 0.89769767 1.027103353 0.753808732 1 12.60612601 -4.109021134 1.550387616 0.855791487 1.142697498 0.304850508 0.083510306 2.210627886 3.675162737 0.015951392 1.071342794 7.78E-05 4.109021134 0.28690601 (ac)S(ph)TVHEILCKLSLEGDHSTPPSAYGSVK ddPTM_HeLa_CUDC101_4h_R1 1 STVHEILCKLSLEGDHSTPPSAYGSVK 27 1 P07355;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 S(0.429)T(0.429)VHEILCKLS(0.037)LEGDHS(0.049)T(0.057)PPSAYGSVK 41.51 4.94E-06 74841000 1760.7 873.89 633.47 528.74 2316.6 1557.7 1889.2 2505.1 1568.6 1415 TRUE FALSE FALSE 1554.313415 900.8135151 667.7173043 550.3043026 2145.709033 1527.989468 1962.067077 2790.270458 1503.941644 1406.583517 1.105027463 0.640426611 0.474708609 0.391234716 1.525475741 1.08631265 1.39491687 1.983721851 1.06921603 1 10.4579795 -4.108995396 1.018730271 0.950266381 2.75658412 0.547151851 0.312308947 1.615329732 1.061726062 0.051143641 3.406685496 7.78E-05 4.108995396 1.806317738 QPEYS(ph)PESPR ddPTM_HeLa_CUDC101_4h_R1 3 QPEYSPESPR 10 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 QPEYS(0.547)PES(0.453)PR;QPEYS(0.753)PES(0.247)PR;QPEYS(0.505)PES(0.495)PR ;; 158.34 7.96E-05 765275100 3180.01 2828.6 2551.83 3095.03 2927.05 3076.04 3060.47 3448 3589.35 2982.25 TRUE FALSE FALSE 2807.254048 2915.745813 2689.789649 3221.258701 2711.127353 3017.369662 3178.513353 3840.506383 3441.395474 2964.511444 0.946953352 0.983550196 0.907329825 1.086606937 0.914527538 1.01783033 1.072187918 1.295493863 1.16086429 1 11.53357865 -4.108575524 1.43639348 0.974622646 1.520470628 0.557331318 0.075962484 0.507413942 0.709682075 0.006475898 0.438206794 7.79E-05 4.108575524 0.545847981 STFVLDEFK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 STFVLDEFKR 10 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 1 ; STFVLDEFK(1)R;STFVLDEFK(1)R 119.22 0.0031088 4393700 1882.19 743.8 444.19 394.03 1359.55 1309.87 1506.61 1141.11 1147.52 739.93 FALSE TRUE FALSE 1661.562541 766.7155964 468.204255 410.1002465 1259.258705 1284.886412 1564.720452 1271.00935 1100.21874 735.5288635 2.25900386 1.04240042 0.636554564 0.557558332 1.712045261 1.746887819 2.127340653 1.728021038 1.495819939 1 9.522638146 -9.81790821 1.856695176 0.997983731 1.601146276 0 0.575522339 0.682787995 4.262350009 0.487525249 0.10057576 1.52E-10 9.81790821 0.603162545 STFVLDEFKR ddPTM_HeLa_CUDC101_4h_R1 1 STFVLDEFKR 10 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 0 0 99.788 0.017235 43279000 4794.6 4162.2 3189 4077.3 3761.5 3598.5 3585.8 3552.1 3235.3 2866.9 FALSE FALSE TRUE 4232.584256 4290.432449 3361.406986 4243.589918 3484.021639 3529.864608 3724.105507 3956.456706 3101.939565 2849.847551 1.485196727 1.505495424 1.17950414 1.489058569 1.222529127 1.23861524 1.306773587 1.388304685 1.08845807 1 11.47666903 -9.427999357 1.1592509 1.000134194 1.358540446 0.536019768 0.113619027 0.279150638 0.671392304 0.07987951 0.02010455 3.73E-10 9.427999357 0.358406252 VDENMTAST(ph)YSLNKIPER ddPTM_HeLa_CUDC101_4h_R1 1 VDENMTASTYSLNKIPER 18 1 Q9HCD6;Q9HCD6-2;Q9HCD6-3;Q9HCD6-4;J3KRP9 Q9HCD6 TANC2 Protein TANC2 1 0 VDENMT(0.042)AS(0.152)T(0.697)Y(0.001)S(0.109)LNKIPER 67.364 0.027033 9556700 837.56 532.07 655.81 510.83 875.25 817.79 1036.1 1291.3 587.81 550.93 TRUE FALSE FALSE 739.3824865 548.462446 691.2650723 531.6638554 810.6845512 802.1920183 1076.062724 1438.296372 563.580223 547.6530439 1.350092901 1.001477947 1.262231773 0.970804164 1.480288588 1.464781447 1.964862126 2.626291205 1.029082609 1 9.097118378 -4.10652589 0.861018546 1.151198822 3.825672634 0.917996276 0.142990452 0.608687924 0.277947234 0.025211894 1.633807056 7.82E-05 4.10652589 2.674473812 up VSS(ph)QAEDTSSSFDNLFIDR ddPTM_HeLa_CUDC101_4h_R1 2 VSSQAEDTSSSFDNLFIDR 19 0 H8Y6P7;P0CAP2-3;P0CAP2;Q9BZD3 H8Y6P7 GCOM1;POLR2M;GCOM2 DNA-directed RNA polymerase II subunit GRINL1A;Putative GRINL1B complex locus protein 2 1 0 VS(0.007)S(0.993)QAEDTSSSFDNLFIDR;VS(0.068)S(0.932)QAEDTSSSFDNLFIDR ; 148.85 4.24E-05 11006300 1764.13 1835.67 1568.33 1686.87 2392.78 2255.15 2863.55 3320.11 2024.18 1809.89 TRUE FALSE FALSE 1557.341356 1892.224817 1653.118664 1755.66785 2216.269386 2212.136771 2973.998083 3698.057902 1940.742444 1799.124694 0.865610572 1.051747454 0.918846075 0.975845563 1.231859801 1.229562786 1.653024992 2.055476152 1.078714805 1 10.81307947 -4.102918947 0.720029533 0.939069577 3.011834465 0.947208575 0.081441147 0.432186712 0.134895003 0.012386113 0.763715567 7.89E-05 4.102918947 2.072764889 up STGGAPTFNVTVTK ddPTM_HeLa_CUDC101_4h_R1 2 STGGAPTFNVTVTK 14 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 0 ; ; 234.87 9.99E-34 41639000 3152.9 2887.54 2685.12 2682.51 3306.9 2457.8 2595.2 2825.4 2569.19 2559.27 FALSE FALSE TRUE 2783.321841 2976.501685 2830.285709 2791.914353 3062.956575 2410.92156 2695.297733 3147.032115 2463.286901 2544.047348 1.094052689 1.169986748 1.112512985 1.097430185 1.203969957 0.947671655 1.059452661 1.237017903 0.968255132 1 11.31290981 -8.736217412 0.802482804 1.00391471 1.11149919 0.303776395 0.077236235 0.668503163 0.848351463 0.038842354 0.015815784 1.84E-09 8.736217412 0.107584479 SSS(ph)YSEANEPDLQMANGGK ddPTM_HeLa_CUDC101_4h_R1 2 SSSYSEANEPDLQMANGGK 19 0 H0Y3A3;A0A3B3ITG3;Q5VWQ8-3;Q5VWQ8-4;Q5VWQ8-2;Q5VWQ8-5;Q5VWQ8 H0Y3A3 DAB2IP Disabled homolog 2-interacting protein 1 0 S(0.111)S(0.111)S(0.776)YS(0.002)EANEPDLQMANGGK;S(0.116)S(0.116)S(0.725)YS(0.044)EANEPDLQMANGGK ; 226.79 6.93E-58 0 1875.04 1478.64 1451.15 1511.67 1617.16 1807.09 2088.2 3051.9 1681.83 1480.18 TRUE FALSE FALSE 1655.250654 1524.195146 1529.603558 1573.322437 1497.865329 1772.622769 2168.742573 3399.31596 1612.504256 1471.375824 1.124967957 1.035897914 1.039573666 1.06928659 1.018003222 1.204738273 1.473955558 2.31029755 1.095915965 1 10.52295008 -4.10169123 1.350974346 1.054736835 3.229238605 0.988521989 0.040842192 0.160706798 0.193704791 0.007530112 0.526535398 7.91E-05 4.10169123 2.17450177 up ASTTSLSGS(ph)DSETEGK ddPTM_HeLa_CUDC101_4h_R1 2 ASTTSLSGSDSETEGK 16 0 Q8N1G2;Q5T7F5 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 1 0 ASTT(0.005)S(0.078)LS(0.017)GS(0.883)DS(0.015)ET(0.001)EGK;ASTTS(0.005)LS(0.225)GS(0.762)DS(0.008)ETEGK ; 319.82 1.31E-166 21467000 6168.2 4985 4617 4756.3 5197.6 4743.3 3877.5 3467.8 5543.5 5341.7 TRUE FALSE FALSE 5445.172946 5138.581941 4866.608986 4950.282472 4814.183403 4652.829455 4027.056474 3862.560335 5314.994584 5309.927331 1.025470333 0.967731123 0.91651141 0.932269345 0.906638284 0.876251061 0.758401429 0.727422447 1.000954298 1 12.3744764 -4.100850748 0.409764713 1.015278206 0.446114666 0.937721541 0.02381019 1.006630768 0.104195748 0.007093211 0.287319051 7.93E-05 4.100850748 -0.56916354 T(ph)PVSDDAESTSMFDMR ddPTM_HeLa_CUDC101_4h_R1 2 TPVSDDAESTSMFDMR 16 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 T(1)PVSDDAESTSMFDMR;T(1)PVSDDAESTSMFDMR ; 178.47 7.86E-07 7453700 604.75 479.07 365.31 533.55 542.35 423.8 378.76 183.805 531.8 406.57 TRUE FALSE FALSE 533.8621217 493.8295789 385.0597636 555.3104752 502.341921 415.7167211 393.3689001 204.7286182 509.8789789 404.1517036 1.320944876 1.221891618 0.952760462 1.374014931 1.242953863 1.028615536 0.973319911 0.506563789 1.261602944 1 8.658753119 -4.09933385 1.384704812 1.165031723 0.031281594 0.712519975 0.130116675 0.896783376 1.13687825 0.022184895 1.567883693 7.96E-05 4.09933385 -1.133750128 VISFIENTS(ph)TPVDR ddPTM_HeLa_CUDC101_4h_R1 1 VISFIENTSTPVDR 14 0 E9PGE5;Q9NUY8-2;Q9NUY8 E9PGE5 TBC1D23 TBC1 domain family member 23 1 0 VIS(0.001)FIENT(0.083)S(0.59)T(0.326)PVDR 136.3 0.00078726 8107900 5715.1 4628.5 4674 4658 5086 4569.3 4239.2 2075.8 5598.7 5929 TRUE FALSE FALSE 5045.184642 4771.098599 4926.690578 4847.973374 4710.815913 4482.148215 4402.707364 2312.100681 5367.919216 5893.734044 0.856025162 0.809520512 0.835920071 0.822563987 0.799292244 0.760493803 0.747014937 0.392298102 0.910784093 1 12.52496624 -3.409425006 0.269405076 0.964976062 1.45E-34 0.749572704 0.075472423 5.277385077 0.203012815 0.041009974 1.828353799 0.000389561 3.409425006 -0.964976062 down KTGSPGS(ph)PGAGGVQSTAK ddPTM_HeLa_CUDC101_4h_R1 2 KTGSPGSPGAGGVQSTAK 18 1 O43237;O43237-2;J3KRZ2;J3KRI4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 KT(0.279)GS(0.329)PGS(0.392)PGAGGVQSTAK;KT(0.021)GS(0.013)PGS(0.966)PGAGGVQSTAK ; 135.86 3.97E-05 74229000 10394.1 8741.4 9325.4 9467.2 9758.2 8545.2 7836.5 5628 9554.7 8692.7 TRUE FALSE FALSE 9175.719354 9010.712173 9829.559332 9853.313337 9038.357027 8382.214547 8138.75643 6268.668771 9160.851222 8640.995434 1.061882213 1.04278636 1.137549419 1.140298408 1.045985627 0.970051959 0.941877182 0.725456785 1.060161563 1 13.0769818 -4.098106416 1.23451661 1.04746426 0.487563924 0.828473578 0.046867173 0.750822985 0.73783281 0.008284149 0.586213527 7.98E-05 4.098106416 -0.559900335 GVVIPTWNIS(ph)PIKK ddPTM_HeLa_CUDC101_4h_R1 2 GVVIPTWNISPIKK 14 1 A0A087WUE6;Q3T8J9-2;Q3T8J9-3;Q3T8J9;A4PB68 A0A087WUE6 GON4L GON-4-like protein 1 0 GVVIPT(0.006)WNIS(0.994)PIKK;GVVIPT(0.006)WNIS(0.994)PIKK ; 82.663 0.011975 50627000 7266.3 7153 6234.8 6001.4 7636.1 7385.2 7036.4 7323.2 7696.4 7953.8 TRUE FALSE FALSE 6414.555329 7373.375452 6571.872147 6246.163032 7072.800116 7244.339615 7307.796305 8156.843487 7379.151134 7906.490444 0.811302483 0.932572486 0.831199657 0.7900045 0.894556209 0.916252244 0.924278143 1.031664244 0.933302985 1 12.94882173 -4.097424907 1.645201671 0.895053001 1.126384433 0.335389924 0.06027471 1.991093827 3.69698868 0.011605774 0.826074634 7.99E-05 4.097424907 0.231331432 GLDDSTGGTPLT(ph)PAAR ddPTM_HeLa_CUDC101_4h_R1 1 GLDDSTGGTPLTPAAR 16 0 I3L2T8;I3L533;I3L2R9;Q9NXR1;Q9NXR1-1;I3L2R3;I3L522 I3L2T8 NDE1 Nuclear distribution protein nudE homolog 1 1 0 GLDDST(0.001)GGT(0.006)PLT(0.992)PAAR 147.39 0.0010698 5332100 1376.7 1266.2 1698.2 1294.9 1578.3 1250.6 1166.3 742.99 1403.9 1388.1 TRUE FALSE FALSE 1215.325313 1305.210121 1790.009829 1347.711619 1461.871953 1226.746889 1211.284582 827.5689783 1346.030648 1379.843519 0.880770389 0.945911694 1.29725567 0.976713374 1.059447635 0.889047831 0.87784199 0.599755673 0.97549514 1 10.43028895 -4.093493559 1.43130085 0.977538101 0.325156717 0.541956125 0.111789316 1.224368199 1.652651705 0.017526219 1.273121549 8.06E-05 4.093493559 -0.652381383 SFS(ph)EDTLMDGPAR ddPTM_HeLa_CUDC101_4h_R1 2 SFSEDTLMDGPAR 13 0 Q9BRG2;M0QZQ6 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 0 S(0.002)FS(0.878)EDT(0.121)LMDGPAR;S(0.001)FS(0.997)EDT(0.002)LMDGPAR ; 156.6 0.00017202 14258100 5634.3 5552.3 4507 4703.7 5353.9 5334.3 4997 4971.3 5667.1 5145.4 TRUE FALSE FALSE 4973.855895 5723.359782 4750.662053 4895.537217 4958.953463 5232.557115 5189.735964 5537.212697 5433.499739 5114.794932 0.972444831 1.11898128 0.928807922 0.957132648 0.969531238 1.023023833 1.014651816 1.082587429 1.062310378 1 12.32046068 -4.092057491 1.292225225 0.989843464 1.150433721 0.129267445 0.053214508 2.116854555 2.276278807 0.006808009 0.495516445 8.09E-05 4.092057491 0.160590256 HTLGDS(ph)DNES ddPTM_HeLa_CUDC101_4h_R1 2 HTLGDSDNES 10 0 G3V1D1;G3V192;P02794 G3V1D1 FTH1 "Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed" 1 0 HTLGDS(0.976)DNES(0.024);HTLGDS(0.997)DNES(0.003) ; 112.85 0.007312 836510000 15957 9325.1 13694.2 13746.9 11823.2 10936.3 9900.5 4791.1 12602.3 14044.2 TRUE FALSE FALSE 14086.54465 9612.395278 14434.54987 14307.558 10951.02609 10727.7083 10282.3656 5336.499458 12082.82786 13960.66447 1.009016775 0.688534224 1.03394433 1.024847924 0.784420119 0.768423904 0.736524083 0.38225254 0.865490886 1 13.76907999 -4.090585011 0.608664109 0.988419823 6.31E-16 0.639600997 0.116541603 1.575733815 0.344959025 0.019523551 1.139223134 8.12E-05 4.090585011 -0.988419823 STLNEIYFGK ddPTM_HeLa_CUDC101_4h_R1 1 STLNEIYFGK 10 0 B1AK87;P47756-2;P47756;B1AK88 B1AK87 CAPZB F-actin-capping protein subunit beta 0 0 128.81 0.022017 177050 143.32 0 0 0 0 0 59.388 0 0 72.953 FALSE FALSE TRUE 126.5202469 0 0 0 0 0 61.67861505 0 0 72.51907231 1.744647895 0 0 0 0 0 0.850515776 0 0 1 6.180288565 -7.25381216 24.84193804 1.351639287 0.130848544 0.215552199 0.522080841 209.2530053 681539.5844 0.06130201 0.074304505 5.57E-08 7.25381216 -1.220790743 GSDALSETSS(ph)VSHIEDLEK ddPTM_HeLa_CUDC101_4h_R1 2 GSDALSETSSVSHIEDLEK 19 0 H3BND4;Q6P996-3;Q6P996-5;Q6P996;Q6P996-4 H3BND4;Q6P996-4 PDXDC1 Pyridoxal-dependent decarboxylase domain-containing protein 1 1 0 GSDALS(0.004)ET(0.03)S(0.232)S(0.733)VS(0.001)HIEDLEK;GSDALSETS(0.019)S(0.978)VS(0.003)HIEDLEK ; 180.86 2.18E-11 11925000 10501 6600.9 7235.6 6791 9541 8672.9 8924.9 9947.8 7444.9 7528.6 TRUE FALSE FALSE 9270.088698 6804.265905 7626.778422 7067.966333 8837.179438 8507.478883 9269.136383 11080.21734 7138.018071 7483.819552 1.238684155 0.909196949 1.019102394 0.944433024 1.180838124 1.136783005 1.238556905 1.480556454 0.95379345 1 12.86955906 -4.088720499 1.155377666 1.083292301 1.79198716 0.618827774 0.104889472 1.392201972 1.167665822 0.017880351 1.303651393 8.15E-05 4.088720499 0.708694859 STLPDADRER ddPTM_HeLa_CUDC101_4h_R1 2 STLPDADRER 10 1 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 103.26 0.015825 200732000 11237.3 10012.1 8083.2 8526 8401.9 8017.2 8077.2 8344.2 8046.1 7417.4 FALSE FALSE TRUE 9920.080729 10320.56093 8520.202242 8873.727133 7782.108576 7864.285268 8388.74031 9294.07 7714.436352 7373.280975 1.345409291 1.399724352 1.155551005 1.203497759 1.055447175 1.066592375 1.137721503 1.26050669 1.046269141 1 12.84809102 -5.811048835 24.99049671 1.188520064 1.126079059 0.055559867 0.123710068 350.8419165 176733.6291 0.023466175 0.042536104 1.55E-06 5.811048835 -0.062441005 AQT(ph)PPISSLPTSPSDEVGR ddPTM_HeLa_CUDC101_4h_R1 1 AQTPPISSLPTSPSDEVGR 19 0 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 AQT(0.95)PPIS(0.037)S(0.01)LPT(0.003)SPSDEVGR 106.29 0.002094 13142000 2323 1438 1275 1653.2 1599.3 1318.1 1192.6 643.86 1205.8 1527.2 TRUE FALSE FALSE 2050.701461 1482.303076 1343.930357 1720.624642 1481.322825 1292.959439 1238.598981 717.1544198 1156.096414 1518.116146 1.350819874 0.976409532 0.885261882 1.133394599 0.97576383 0.851686771 0.815878933 0.472397597 0.761533573 1 10.56806646 -4.087681911 0.552252518 1.145214189 2.00E-13 0.382366111 0.173246189 2.259094185 0.406730234 0.031379331 1.727704384 8.17E-05 4.087681911 -1.145214189 T(ph)AAPS(ph)PS(ph)LLY(ph)KSTK ddPTM_HeLa_CUDC101_4h_R1 1 TAAPSPSLLYKSTK 14 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 4 0 T(1)AAPS(1)PS(0.989)LLY(0.933)KS(0.074)T(0.004)K 61.732 0.0030451 0 1032.2 730.9 881.9 688.25 1412.8 1161.8 1091.5 1236 956.37 1267.2 TRUE FALSE FALSE 911.2070807 753.4181627 929.5781816 716.3198099 1308.580559 1139.640601 1133.599521 1376.701244 916.9480238 1259.662638 0.723373904 0.598111066 0.737958048 0.568660043 1.038834144 0.904718904 0.899923111 1.09291266 0.727931429 1 10.29882169 -4.087158949 0.944165619 0.823666931 1.282772216 0.277165214 0.148341959 3.768798857 2.04695343 0.027074242 1.904723371 8.18E-05 4.087158949 0.459105286 STNGDTFLGGEDFDQALLR ddPTM_HeLa_CUDC101_4h_R1 2 STNGDTFLGGEDFDQALLR 19 0 P38646 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 0 ; ; 349.54 8.62E-218 41905000 1992.23 1683.62 1554.51 1763.8 1605.1 1771.68 1569.33 1820.2 1915.74 1519.78 FALSE FALSE TRUE 1758.703819 1735.490337 1638.551513 1835.735388 1486.694971 1737.888156 1629.859584 2027.40421 1836.772386 1510.740281 1.164133797 1.148768163 1.084601724 1.215123083 0.984083757 1.150355344 1.0788483 1.341993879 1.2158095 1 10.56103995 -9.316146195 0.864252999 0.992976344 1.140577739 0 0.110825005 0.706286896 0.873017374 0.070734525 0.015639559 4.83E-10 9.316146195 0.147601395 STNPGISIGDVAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 STNPGISIGDVAKK 14 1 O15347;E7ES08;E7EQU1;E9PES6 O15347 HMGB3 High mobility group protein B3 0 1 STNPGISIGDVAK(1)K 141.54 0.0021993 343330 207.87 149.15 0 0 383.46 161.53 212.26 323.37 0 157.37 FALSE TRUE FALSE 183.5037937 153.7451347 0 0 355.1729198 158.4490844 220.4469393 360.1811337 0 156.4339562 1.173043233 0.982811778 0 0 2.27043366 1.012881654 1.409201331 2.302448537 0 1 7.289409894 -3.162714324 0.817700657 0.973613089 8.642859394 0.309473594 0.670263415 11.44184144 1.434915902 0.095574695 121.2373405 0.000687521 3.162714324 7.669246305 ASVSPMDEPVPDSES(ph)PIEK ddPTM_HeLa_CUDC101_4h_R1 8 ASVSPMDEPVPDSESPIEK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ASVSPMDEPVPDS(0.168)ES(0.832)PIEK;ASVSPMDEPVPDS(0.101)ES(0.899)PIEK;ASVSPMDEPVPDS(0.474)ES(0.526)PIEK;ASVSPMDEPVPDS(0.022)ES(0.978)PIEK;ASVSPMDEPVPDS(0.004)ES(0.996)PIEK;ASVSPMDEPVPDS(0.009)ES(0.991)PIEK;ASVSPMDEPVPDS(0.142)ES(0.858)PIEK;ASVSPMDEPVPDS(0.232)ES(0.768)PIEK ;;;;;;; 298 1.19E-123 469519900 40189.4 34748.8 34572 35431 39095 38673.5 38820.6 42493.6 39061.3 37842.8 TRUE FALSE FALSE 35478.45946 35819.36934 36441.06689 36876.02933 36211.03974 37935.86742 40317.92355 47330.89966 37451.17668 37617.70934 0.943131841 0.952194325 0.96872105 0.980283754 0.962606187 1.008457668 1.071780399 1.258207916 0.995573025 1 15.19912438 -4.086113291 1.277390273 0.970250539 1.482521652 0.961505695 0.017351504 0.334690986 0.347502718 0.003329484 0.248273218 8.20E-05 4.086113291 0.512271113 SVGDGLS(ph)TSAVGCASAAPR ddPTM_HeLa_CUDC101_4h_R1 1 SVGDGLSTSAVGCASAAPR 19 0 Q03468;D6R9X7;P0DP91 Q03468 ERCC6 DNA excision repair protein ERCC-6 1 0 SVGDGLS(0.333)T(0.333)S(0.333)AVGCASAAPR 75.998 0.0028723 0 1980.4 1484.6 1339.6 1568.1 1929.6 1813.1 1926.9 2182.4 1885.3 1641.6 TRUE FALSE FALSE 1748.260514 1530.338766 1412.022828 1632.053896 1787.257252 1778.518138 2001.221178 2430.835594 1807.587136 1631.83569 1.071345923 0.937801995 0.865297184 1.000133718 1.095243389 1.089888001 1.226361937 1.489632571 1.10770168 1 10.67228008 -4.085990627 1.034705284 1.013106454 1.875760858 0.833857525 0.066826667 0.738792279 0.487002956 0.010570712 0.763148556 8.20E-05 4.085990627 0.862654404 KPS(ph)VSEEVQATPNK ddPTM_HeLa_CUDC101_4h_R1 1 KPSVSEEVQATPNK 14 1 Q9UKJ3;Q9UKJ3-2 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 1 0 KPS(0.858)VS(0.142)EEVQATPNK 151.73 0.00038532 46409000 5044.5 4482.6 4396.1 5011.5 5867.1 6208.4 7101.2 8027.8 4478.4 4758.4 TRUE FALSE FALSE 4453.191357 4620.703593 4633.766463 5215.890632 5434.295722 6089.985114 7375.095663 8941.652303 4293.798456 4730.096825 0.941458816 0.97687294 0.97963459 1.102702719 1.148876212 1.287496924 1.559184925 1.890374052 0.907761218 1 12.207654 -4.084067356 0.66014667 0.969222477 2.702826895 0.989116479 0.031500548 0.243829846 0.062567119 0.005402132 0.334328105 8.24E-05 4.084067356 1.733604418 ITSVIPS(ph)PPPPPPLPPPQR ddPTM_HeLa_CUDC101_4h_R1 1 ITSVIPSPPPPPPLPPPQR 19 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 IT(0.001)S(0.004)VIPS(0.995)PPPPPPLPPPQR 97.129 0.00066177 0 399.93 533.57 605.24 423 592.29 408.15 432.32 209.95 559.88 495.8 TRUE FALSE FALSE 353.0508117 550.0086593 637.9611052 440.2517684 548.5979467 400.3652188 448.9947272 233.8498594 536.8015094 492.8509595 0.716343967 1.115973599 1.294430076 0.893275664 1.113111248 0.812345418 0.911015224 0.474483928 1.089176148 1 8.945007625 -4.083348621 2.189770595 0.928867507 0.17178491 0.40792441 0.171784389 1.243860234 4.249798283 0.026936943 2.179356236 8.25E-05 4.083348621 -0.757082598 VGMVETNS(ph)QDRPVDDVK ddPTM_HeLa_CUDC101_4h_R1 2 VGMVETNSQDRPVDDVK 17 1 Q9Y3C6 Q9Y3C6 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 1 0 VGMVET(0.447)NS(0.553)QDRPVDDVK;VGMVET(0.091)NS(0.909)QDRPVDDVK ; 82.146 0.0061688 56576000 4077.9 4341.1 3442.4 3886.9 5248.1 4765.2 4807.7 5686.8 4841.9 5813.1 TRUE FALSE FALSE 3599.894744 4474.844146 3628.506557 4045.424583 4860.958119 4674.311749 4993.134599 6334.162325 4642.314833 5778.523423 0.622978308 0.774392318 0.627929713 0.700079291 0.841211113 0.808911102 0.864084859 1.096155862 0.803373889 1 12.49648517 -4.081278225 1.607109804 0.791975747 1.324052509 0.458157671 0.104943546 1.806624402 3.077106948 0.022028037 1.711403266 8.29E-05 4.081278225 0.532076762 SSTGPEPPAPT(ph)PLLAER ddPTM_HeLa_CUDC101_4h_R1 1 SSTGPEPPAPTPLLAER 17 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SSTGPEPPAPT(1)PLLAER 139.39 5.60E-05 0 1999.1 1291.6 1192.3 1294.8 1473.9 1756.4 2064.2 3732.4 1125.3 1260.1 TRUE FALSE FALSE 1764.768528 1331.392665 1256.759345 1347.607541 1365.173333 1722.899596 2143.816885 4157.281329 1078.914658 1252.604869 1.408878867 1.062899161 1.003316669 1.075844086 1.089867497 1.375453376 1.711486949 3.318908805 0.86133679 1 10.29071568 -4.080816046 1.535338767 1.159548485 4.955788117 0.948183999 0.156080745 0.298417836 0.459046662 0.024979135 1.938344021 8.30E-05 4.080816046 3.796239632 up (ac)S(ph)VELEEALPVTTAEGMAK ddPTM_HeLa_CUDC101_4h_R1 3 SVELEEALPVTTAEGMAK 18 0 Q92522 Q92522 H1FX Histone H1x 1 0 S(0.999)VELEEALPVT(0.001)TAEGMAK;S(1)VELEEALPVTTAEGMAK;S(1)VELEEALPVTTAEGMAK ;; 96.059 4.87E-11 10592400 4567.7 4632.7 4132.57 4443.12 5126 5887 6591.9 14099.5 5229.4 5775.9 TRUE FALSE FALSE 4032.28113 4775.427996 4355.989235 4624.329638 4747.865192 5774.715283 6846.151791 15704.53009 5013.841919 5741.54469 0.702299006 0.83173227 0.758678974 0.805415596 0.826931679 1.005777294 1.192388488 2.735244771 0.873256622 1 12.48722321 -4.080295773 1.753565183 0.844094956 4.121000037 0.976334514 0.087748982 0.216749099 0.447101045 0.017327353 1.365384326 8.31E-05 4.080295773 3.276905081 up STPKEDDSSASTSQSTR ddPTM_HeLa_CUDC101_4h_R1 2 STPKEDDSSASTSQSTR 17 1 E7EX17;P23588-2;P23588;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ; ; 124.5 0.00035963 8554800 1785.64 1736.75 1771.05 2191.6 1720.62 1781.74 1520.31 1818.58 2269.53 1849.28 FALSE FALSE TRUE 1576.329986 1790.257209 1866.79832 2280.982921 1593.693291 1747.756278 1578.948866 2025.599796 2175.979013 1838.2804 0.857502471 0.973876025 1.015513368 1.240824262 0.866947877 0.950756086 0.858927107 1.101899251 1.183703538 1 10.84414113 -7.008908341 22.31648422 0.931813699 1.000477054 0 0.13499554 226.1211677 566467.2389 0.018772881 0.023953931 9.80E-08 7.008908341 0.068663356 GYYSPYSVSGS(ph)GSTAGSR ddPTM_HeLa_CUDC101_4h_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 GYYS(0.009)PYS(0.156)VS(0.1)GS(0.521)GS(0.214)T(0.001)AGSR 163.9 1.49E-05 1580100000 2584.3 2296.1 1982.2 2225.6 2733.5 2784.7 2658.7 2964 2311.5 2302.9 TRUE FALSE FALSE 2281.372272 2366.840119 2089.363728 2316.369588 2531.855151 2731.586487 2761.24695 3301.409779 2216.218992 2289.202248 0.996579605 1.033914815 0.91270386 1.011867601 1.105998892 1.193248211 1.206204891 1.442166057 0.968118476 1 11.16062921 -4.078776093 0.668405136 0.993090011 1.796729941 0.915513842 0.04318328 0.71185068 0.186475902 0.007274626 0.458518541 8.34E-05 4.078776093 0.80363993 RDS(ph)LGAYASQDANEQGQDLGK ddPTM_HeLa_CUDC101_4h_R1 2 RDSLGAYASQDANEQGQDLGK 21 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RDS(1)LGAYASQDANEQGQDLGK;RDS(0.993)LGAY(0.007)ASQDANEQGQDLGK ; 127.49 2.98E-07 34186000 6483.1 4464.4 4903.8 4539.6 4168.6 4396.1 3770 2400.9 4402.1 6161.6 TRUE FALSE FALSE 5723.160846 4601.942872 5168.914261 4724.74451 3861.090683 4312.251717 3915.410163 2674.208751 4220.643575 6124.950529 0.934401155 0.75134368 0.843911185 0.771393089 0.630387244 0.704046783 0.639255802 0.436609037 0.689090231 1 12.58048248 -4.077658025 0.22814953 1.038266451 6.07E-21 0.442597465 0.114547659 2.69041395 0.109495288 0.049202739 0.806742334 8.36E-05 4.077658025 -1.038266451 IIGS(ph)PETK ddPTM_HeLa_CUDC101_4h_R1 1 IIGSPETK 8 0 E9PMS6;H0YDG6 E9PMS6 LMO7 1 0 IIGS(0.533)PET(0.467)K 84.817 0.03617 14168000 4666.6 4305.3 4537.2 4198 4660.6 4230.9 3554.6 2207.2 4043.3 4569.1 TRUE FALSE FALSE 4119.588222 4437.94119 4782.494756 4369.212585 4316.796823 4150.202632 3691.702113 2458.458726 3876.633463 4541.92279 0.907014146 0.97710626 1.052966987 0.961974209 0.950433775 0.913754554 0.812806004 0.541281488 0.853522537 1 12.14908747 -4.077495153 1.256158013 0.964823863 0.201301441 0.863378718 0.050182253 0.474250598 0.468164152 0.006729819 0.519264213 8.37E-05 4.077495153 -0.763522422 S(ph)ISADDDLQESSR ddPTM_HeLa_CUDC101_4h_R1 1 SISADDDLQESSR 13 0 P18615;P18615-3;A0A0A0MT02;A2ABK4;A0A0G2JI50;E9PD43;A0A0A0MSN9;P18615-4 P18615 NELFE Negative elongation factor E 1 0 S(0.5)IS(0.5)ADDDLQESSR 211.82 7.65E-24 183370000 1150.7 1153.1 997.78 1226.8 1114.5 1648.3 1786.7 3075.3 1073.4 1690 TRUE FALSE FALSE 1015.81669 1188.625644 1051.723005 1276.834207 1032.285555 1616.861424 1855.613618 3425.379721 1029.153998 1679.947805 0.604671578 0.707537247 0.626045048 0.760043975 0.614474779 0.962447416 1.104566232 2.038979849 0.612610698 1 10.71420069 -4.077091262 1.480065362 0.773178237 3.015482721 0.898020853 0.133052529 0.523008577 0.736871115 0.024715886 1.948008283 8.37E-05 4.077091262 2.242304484 up VSDS(ph)LTDLALK ddPTM_HeLa_CUDC101_4h_R1 2 VSDSLTDLALK 11 0 Q8N3C0 Q8N3C0 ASCC3 Activating signal cointegrator 1 complex subunit 3 1 0 VS(0.018)DS(0.98)LT(0.002)DLALK;VS(0.003)DS(0.829)LT(0.167)DLALK ; 137.95 0.0015235 8037800 3890.2 2851.4 2914.4 2905 3489.7 3602.7 3810.6 5160.4 3148.2 3260.4 TRUE FALSE FALSE 3434.196653 2939.248254 3071.96128 3023.478456 3232.271783 3533.9845 3957.576118 5747.839077 3018.429863 3241.006996 1.059607911 0.906893524 0.947841607 0.932882422 0.997304784 1.09039706 1.221094593 1.773473209 0.931324699 1 11.66222642 -4.075710178 1.447845834 1.0048675 2.37438216 0.951930861 0.053944724 0.301030703 0.403142795 0.008490987 0.67220935 8.40E-05 4.075710178 1.36951466 SDTSS(ph)PEVR ddPTM_HeLa_CUDC101_4h_R1 1 SDTSSPEVR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SDT(0.021)S(0.132)S(0.847)PEVR 128.35 0.0036875 101210000 12774 8068.6 11436 11806 9733.9 8769.1 7826.6 4271.3 11758 12728 TRUE FALSE FALSE 11276.65108 8317.184002 12054.26475 12287.49971 9015.84959 8601.844028 8128.474584 4757.527527 11273.33026 12652.29329 0.891273291 0.657365729 0.952733586 0.97116779 0.712586199 0.679864419 0.642450692 0.376020965 0.891010823 1 13.62711128 -4.075611465 0.428384511 0.950256347 2.08E-28 0.696164962 0.103291926 2.31232216 0.255476152 0.026060483 1.154803577 8.40E-05 4.075611465 -0.950256347 QLSS(ph)GVSEIR ddPTM_HeLa_CUDC101_4h_R1 4 QLSSGVSEIR 10 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 QLS(0.259)S(0.741)GVSEIR;QLS(0.087)S(0.851)GVS(0.063)EIR;QLS(0.321)S(0.679)GVSEIR;QLS(0.262)S(0.587)GVS(0.151)EIR ;;; 148.13 0.00061321 5387016000 9948 7883 6407.6 7851.1 9029.2 11280.5 15046.9 28980.1 8528.8 9089.5 TRUE FALSE FALSE 8781.91052 8125.865886 6754.014238 8171.301793 8363.133905 11065.34326 15627.26397 32279.07744 8177.239254 9035.43525 0.971941061 0.899333088 0.747502921 0.904361723 0.92559281 1.224660788 1.729552981 3.572498341 0.905018854 1 13.14137838 -4.07559692 1.414799414 0.951704298 5.63602552 0.98884476 0.084949886 0.147109956 0.187302055 0.013933771 1.100809931 8.40E-05 4.07559692 4.684321222 up EYGSQEGKHDYDDS(ph)SEEQSAEDSYEASPGSETQR ddPTM_HeLa_CUDC101_4h_R1 1 EYGSQEGKHDYDDSSEEQSAEDSYEASPGSETQR 34 1 P98175-5;P98175-2;P98175 P98175-5 RBM10 RNA-binding protein 10 1 0 EYGSQEGKHDY(0.001)DDS(0.45)S(0.45)EEQS(0.098)AEDS(0.001)YEASPGSETQR 107.29 3.39E-15 10579000 1314.3 950.32 1186.8 1071.7 1271 1113 986.52 457.51 1785.2 1350.5 TRUE FALSE FALSE 1160.239746 979.5982328 1250.961998 1115.408558 1177.240862 1091.771379 1024.570407 509.5910891 1711.6133 1342.467166 0.86425931 0.729699957 0.931838059 0.830864685 0.876923393 0.813257417 0.763199602 0.379592963 1.274975913 1 10.39067109 -4.074962138 1.204162639 0.90735804 9.71E-27 0.586928203 0.137185923 0.801688344 0.719658185 0.012985213 1.005571619 8.41E-05 4.074962138 -0.90735804 LSFASETPLEKEPHS(ph)PADQPEQQAESTLTSAETR ddPTM_HeLa_CUDC101_4h_R1 1 LSFASETPLEKEPHSPADQPEQQAESTLTSAETR 34 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2 H3BSS6 ZNF106 Zinc finger protein 106 1 0 LSFASETPLEKEPHS(1)PADQPEQQAESTLTSAETR 128.01 4.51E-19 34583000 1497.9 1563.4 1187.9 912.52 1537.4 1523.2 1422.8 1629.1 1320.2 1237.9 TRUE FALSE FALSE 1322.318433 1611.566501 1252.121467 949.7365098 1423.989065 1494.147498 1477.677873 1814.550159 1265.780797 1230.536916 1.074586561 1.309644985 1.017540759 0.771806597 1.157209545 1.214224034 1.200839937 1.474600344 1.02864106 1 10.26507222 -4.07275205 0.901323068 1.043275178 1.812793814 0.490473941 0.130611564 1.848278132 0.894362106 0.02081719 1.50965184 8.46E-05 4.07275205 0.769518635 AAPQSPS(ph)VPK ddPTM_HeLa_CUDC101_4h_R1 2 AAPQSPSVPK 10 0 E9PF10;O75694-2;O75694 E9PF10 NUP155 Nuclear pore complex protein Nup155 1 0 AAPQS(0.421)PS(0.579)VPK;AAPQS(0.423)PS(0.577)VPK ; 129.74 0.0024498 852343000 9229.1 7139.5 7313.1 8264.1 7932.4 7358.5 6877.3 5502.7 7505.7 7364.3 TRUE FALSE FALSE 8147.278888 7359.459533 7708.468307 8601.145718 7347.242656 7218.148873 7142.559765 6129.105125 7196.311869 7320.496816 1.112940705 1.005322414 1.052997973 1.174940162 1.003653555 0.986018989 0.975693309 0.837252618 0.983035995 1 12.83772585 -4.070257131 0.975020365 1.056780589 0.661562951 0.549268846 0.056979999 1.520821084 0.865629996 0.009164905 0.686761264 8.51E-05 4.070257131 -0.395217637 VGS(ph)PATVTFQQNK ddPTM_HeLa_CUDC101_4h_R1 1 VGSPATVTFQQNK 13 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;J3QQK4 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 VGS(0.992)PAT(0.008)VTFQQNK 143.56 1.45E-05 0 677.98 568.76 680.29 915.23 806.11 623.24 628.11 421.53 725.97 773.04 TRUE FALSE FALSE 598.5082122 586.2828215 717.0685352 952.5570354 746.6448713 611.3527354 652.3364131 469.5152713 696.0452093 768.4419237 0.778859395 0.762950073 0.933146036 1.23959535 0.971634743 0.795574417 0.848907891 0.610996429 0.905787657 1 9.58579242 -4.070078507 1.395434818 0.912977265 0.377742717 0.346406189 0.13029808 2.089693943 2.556191848 0.02188664 1.771557108 8.51E-05 4.070078507 -0.535234548 NSPNNMSLSNQPGT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 NSPNNMSLSNQPGTPR 16 0 H0Y9V4;A0A087X159;P81877-4;P81877-5;P81877-3;P81877 H0Y9V4 SSBP2 Single-stranded DNA-binding protein 2 1 0 NSPNNMSLSNQPGT(1)PR;NSPNNMS(0.001)LS(0.001)NQPGT(0.999)PR ; 124.99 0.00085135 8989800 2632.56 1866.94 2202.73 2209.48 2118.16 2489.32 2197.92 2451.47 2091.68 2366.06 TRUE FALSE FALSE 2323.975308 1924.458209 2321.816247 2299.592145 1961.907557 2441.840368 2282.694511 2730.535436 2005.460065 2351.98657 0.988090382 0.8182267 0.987172408 0.977723331 0.834149132 1.038203364 0.970538922 1.160948566 0.852666461 1 11.19966411 -4.069491024 2.259144373 0.970867855 1.295118843 0.358830037 0.079037635 1.153054142 4.041229791 0.009795581 0.902539552 8.52E-05 4.069491024 0.324250988 SS(ph)SSERPEPQQK ddPTM_HeLa_CUDC101_4h_R1 2 SSSSERPEPQQK 12 1 P78362;C9J2M4 P78362 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 0 S(0.161)S(0.631)S(0.2)S(0.008)ERPEPQQK;S(0.021)S(0.352)S(0.352)S(0.275)ERPEPQQK ; 77.42 0.022787 47106000 4473.1 2875.1 4541.1 4538 3946.8 3232.3 3227.9 1579.29 4054.5 4527.3 TRUE FALSE FALSE 3948.769999 2963.678423 4786.605602 4723.079255 3655.652427 3170.649263 3352.401184 1759.06999 3887.371794 4500.371418 0.877432023 0.658540851 1.063602347 1.049486546 0.812300161 0.704530575 0.744916557 0.390872181 0.863789104 1 12.13582836 -4.069365911 0.78478875 0.932915488 3.03E-18 0.610684418 0.12143076 1.608632677 0.580896439 0.02018127 1.402431109 8.52E-05 4.069365911 -0.932915488 GGIPAS(ph)PIDPFQSR ddPTM_HeLa_CUDC101_4h_R1 1 GGIPASPIDPFQSR 14 0 Q96LD4-2;Q96LD4 Q96LD4-2 TRIM47 Tripartite motif-containing protein 47 1 0 GGIPAS(0.999)PIDPFQS(0.001)R 104.09 0.0012102 0 2175.1 1910.9 1616.6 1727.8 2027.9 2018.9 1954.8 2526.7 1847.9 1897.3 TRUE FALSE FALSE 1920.138075 1969.772564 1703.998286 1798.267152 1878.305857 1980.392846 2030.197291 2814.329315 1771.72878 1886.014775 1.018092806 1.044409932 0.903491483 0.953474583 0.995912589 1.050041003 1.076448243 1.49220958 0.939403446 1 10.88112526 -4.069017445 1.807792 0.999950827 1.866604081 0.918749048 0.044677354 0.29318758 0.629937359 0.005963372 0.506673651 8.53E-05 4.069017445 0.866653255 ALPDSQQVPS(ph)SPASK ddPTM_HeLa_CUDC101_4h_R1 1 ALPDSQQVPSSPASK 15 0 O14924-7;O14924-6;O14924-2;O14924-3;O14924-5;O14924-4;O14924 O14924-7 RGS12 Regulator of G-protein signaling 12 1 0 ALPDSQQVPS(0.975)S(0.025)PASK 205.66 4.54E-18 6778500 3312.5 2611.5 3098 2762.5 3010.9 3211.8 2986.5 3114.7 3519.9 3143.7 TRUE FALSE FALSE 2924.213771 2691.95722 3265.487251 2875.166691 2788.791906 3150.540266 3101.690305 3469.264858 3374.808232 3125.001133 0.935748068 0.861425998 1.044955542 0.920053008 0.892413086 1.00817252 0.992540538 1.110164352 1.079938243 1 11.609641 -4.068599751 1.459849219 0.959122903 1.228374582 0.301080536 0.06452897 1.425562039 1.917640886 0.007722079 0.633719985 8.54E-05 4.068599751 0.269251679 LVREDENDAS(ph)DDEDDDEKR ddPTM_HeLa_CUDC101_4h_R1 2 LVREDENDASDDEDDDEKR 19 2 Q9Y5B6-3;Q9Y5B6-4;Q9Y5B6-2;Q9Y5B6 Q9Y5B6-3 PAXBP1 PAX3- and PAX7-binding protein 1 1 0 LVREDENDAS(1)DDEDDDEKR;LVREDENDAS(1)DDEDDDEKR ; 96.777 0.0016258 8877500 4085.5 2294.75 3843.5 3624.7 2919.1 3262.5 2695.2 1915.77 4439.5 4344.3 TRUE FALSE FALSE 3606.603883 2365.448528 4051.291236 3772.530933 2703.763809 3200.273248 2799.154767 2133.853513 4256.501931 4318.45991 0.835159746 0.547752805 0.938133344 0.873582483 0.626094456 0.741068185 0.648183571 0.494123729 0.98565276 1 12.07630118 -4.067596503 0.102399302 1.204199795 2.58E-11 0.561163573 0.11560155 29.61317297 0.466886916 1.240446732 5.455206313 8.56E-05 4.067596503 -1.204199795 T(ph)SPLNSSGSSQGR ddPTM_HeLa_CUDC101_4h_R1 1 TSPLNSSGSSQGR 13 0 G3XAH6;P51003;H0YJL4 G3XAH6 PAPOLA Poly(A) polymerase alpha 1 0 T(0.5)S(0.5)PLNSSGSSQGR 142.39 0.0032474 36133000 6250.3 4529 4523.5 4677.7 4791.2 4457.1 3952.7 2372.2 5340.4 6417.7 TRUE FALSE FALSE 5517.649309 4668.533122 4768.054093 4868.476825 4437.762721 4372.088244 4105.156963 2642.241659 5120.266452 6379.527235 0.864899405 0.731799231 0.747399285 0.763140691 0.695625641 0.685331073 0.643489214 0.414175152 0.802609075 1 12.6392338 -4.064703761 0.164262296 1.077961023 7.92E-15 0.690228308 0.080259376 4.820028039 0.128746805 0.122592823 1.124734233 8.62E-05 4.064703761 -1.077961023 S(ph)LASIEAK ddPTM_HeLa_CUDC101_4h_R1 2 SLASIEAK 8 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 S(0.838)LAS(0.162)IEAK;S(0.984)LAS(0.016)IEAK ; 128.28 0.005897 59692000 8387 6248.4 5103.4 7879.6 9284.2 9548.5 10948.4 14401.7 6556.6 8736.9 TRUE FALSE FALSE 7403.888574 6440.905798 5379.305241 8200.964147 8599.323063 9366.378271 11370.68346 16041.13131 6286.334173 8684.93253 0.852498111 0.741618404 0.619383653 0.94427494 0.99014276 1.078462986 1.309242578 1.847007016 0.723820726 1 13.08429893 -4.063294823 1.012702948 0.891100906 2.66331635 0.871429024 0.120584393 0.72879387 0.445249638 0.019766757 1.533365192 8.64E-05 4.063294823 1.772215444 S(ph)PAVATSTAAPPPPSS(ph)PLPSK ddPTM_HeLa_CUDC101_4h_R1 1 SPAVATSTAAPPPPSSPLPSK 21 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 S(0.897)PAVAT(0.071)S(0.022)T(0.01)AAPPPPS(0.065)S(0.918)PLPS(0.018)K 174.55 1.46E-08 9694900 2104 1676.6 1580.6 1810.5 1635.2 1621.4 1437.9 587.24 1561.3 2005.7 TRUE FALSE FALSE 1857.372309 1728.254059 1666.052017 1884.340016 1514.574554 1590.474496 1493.360285 654.0890279 1496.942553 1993.770007 0.931588048 0.866827193 0.83562899 0.945114035 0.759653595 0.79772215 0.749013316 0.32806644 0.750810047 1 10.96128328 -4.061384673 0.604423797 0.955056099 1.67E-40 0.677995514 0.100449979 1.236059658 0.260609504 0.014015967 0.864729916 8.68E-05 4.061384673 -0.955056099 S(ph)PQSDPADTPTNTK ddPTM_HeLa_CUDC101_4h_R1 1 SPQSDPADTPTNTK 14 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 S(1)PQSDPADTPTNTK 211.7 1.24E-42 0 1659.8 1799.4 2532.6 1669.6 1675 1433.2 1412 639.88 2075.8 1652.7 TRUE FALSE FALSE 1465.24076 1854.837381 2669.520017 1737.693505 1551.438587 1405.864098 1466.461313 712.7213527 1990.234645 1642.869667 0.891878881 1.129022843 1.62491284 1.057718418 0.944346723 0.85573684 0.892621821 0.433827081 1.21143794 1 10.68200232 -4.060135381 1.230469565 1.018159397 7.07E-16 0.442096803 0.214241019 1.91346718 1.756782744 0.033538299 2.77099393 8.71E-05 4.060135381 -1.018159397 AQST(ph)DSLGTSGSLQSK ddPTM_HeLa_CUDC101_4h_R1 2 AQSTDSLGTSGSLQSK 16 0 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 1 0 AQS(0.004)T(0.907)DS(0.084)LGT(0.003)S(0.002)GSLQSK;AQS(0.174)T(0.565)DS(0.258)LGT(0.002)S(0.001)GSLQSK ; 174.35 2.18E-06 37578700 3419.4 2447 2645.8 2569.9 3060.7 3006.7 2960.6 3481.7 2621.9 2800.2 TRUE FALSE FALSE 3018.583115 2522.38917 2788.839951 2674.71163 2834.918259 2949.352207 3074.791334 3878.042654 2513.824172 2783.544286 1.084438689 0.906178925 1.00190249 0.96090141 1.018456316 1.059567194 1.104631728 1.393203145 0.903101914 1 11.44270732 -4.05993151 1.579870273 1.020952565 1.695473526 0.795102197 0.060324652 0.577134909 0.905486076 0.007975588 0.694394767 8.71E-05 4.05993151 0.674520961 DPAQPMSPGEAT(ph)QSGARPADR ddPTM_HeLa_CUDC101_4h_R1 3 DPAQPMSPGEATQSGARPADR 21 1 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 DPAQPMS(0.003)PGEAT(0.944)QS(0.053)GARPADR;DPAQPMS(0.001)PGEAT(0.844)QS(0.156)GARPADR;DPAQPMS(0.279)PGEAT(0.616)QS(0.105)GARPADR ;; 98.882 0.00031866 142527000 5083.2 4331.8 4236.7 4566.2 4673.5 4414.3 3596.3 2262.88 4286.4 4639.6 TRUE FALSE FALSE 4487.355002 4465.257624 4465.748817 4752.429373 4328.745216 4330.104582 3735.010496 2520.477112 4109.712778 4612.003453 0.972973036 0.968181761 0.968288264 1.030447922 0.938582388 0.938877134 0.809845555 0.546503735 0.891090568 1 12.17117788 -4.056666119 1.159607386 0.98579489 0.165360967 0.923586172 0.036818306 0.237837021 0.191519351 0.003189707 0.263378099 8.78E-05 4.056666119 -0.820433924 DSPAFPDS(ph)PWR ddPTM_HeLa_CUDC101_4h_R1 2 DSPAFPDSPWR 11 0 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 DSPAFPDS(1)PWR;DSPAFPDS(1)PWR ; 205.87 2.78E-23 53200000 9470.8 7870.4 7329 7087.6 7520.8 7504.4 6925.9 3461.1 8960.6 9268.9 TRUE FALSE FALSE 8360.647181 8112.877695 7725.227909 7376.662963 6966.005568 7361.266073 7193.034283 3855.097634 8591.240275 9213.768171 0.907408025 0.880516803 0.838443921 0.800613042 0.756043069 0.798941968 0.780683229 0.41840619 0.932435038 1 13.16957558 -3.390970882 0.265878087 0.98920176 1.92E-19 0.762351265 0.07290725 4.781864003 0.179429687 0.038065669 1.677662795 0.000406471 3.390970882 -0.98920176 down VNGTTVS(ph)SPSTSLQR ddPTM_HeLa_CUDC101_4h_R1 1 VNGTTVSSPSTSLQR 15 0 A0A075B6G3;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A087WV90;P11532-11;P11532;P11532-8;P11532-14;P11532-6;P11532-15;P11532-5;P11532-7;P11532-12;P11532-2;P11532-17;P11532-3;A0A5H1ZRP7;A0A5H1ZRP9;A0A5H1ZRQ1;A0A5H1ZRQ8;H0Y304;P11532-16;P11532-9;P11532-13;A0A5H1ZRR9 A0A075B6G3 DMD Dystrophin 1 0 VNGTTVS(0.499)S(0.499)PS(0.002)TSLQR 132.65 0.00061867 38132000 2933.3 2603.8 2172.6 2313.4 2367.1 2438.5 1942.3 1595.4 2867.2 2235.6 TRUE FALSE FALSE 2589.463021 2684.019992 2290.057328 2407.750451 2192.483749 2391.989675 2017.215162 1777.013887 2749.012802 2222.302552 1.165216239 1.207765338 1.030488547 1.083448538 0.986582024 1.076356445 0.90771401 0.799627344 1.237011045 1 11.11783953 -4.05501981 0.865333236 1.085836379 0.529980242 0.610474863 0.080116679 1.660932744 0.723093638 0.012624459 0.950540432 8.81E-05 4.05501981 -0.555856137 RLS(ph)GNEYVFTK ddPTM_HeLa_CUDC101_4h_R1 2 RLSGNEYVFTK 11 1 A0A2R8Y4E6;O95263-2;O95263-3;O95263-6;O95263-4;O95263 A0A2R8Y4E6 PDE8B "High affinity cAMP-specific and IBMX-insensitive 3,5-cyclic phosphodiesterase 8B" 1 0 RLS(1)GNEYVFTK;RLS(1)GNEYVFTK ; 78.326 0.022903 31108000 8466.7 6998.1 5988.8 6643.1 6887.1 5971.9 5222.9 3911.9 6413.5 6923.9 TRUE FALSE FALSE 7474.246261 7213.703166 6312.572643 6914.034332 6379.052354 5857.995957 5424.349003 4357.214884 6149.132815 6882.716335 1.085944255 1.048089565 0.917162983 1.004550238 0.926821918 0.851116866 0.788111661 0.633066172 0.893416569 1 12.74876234 -4.052872097 0.536882737 1.040296993 0.274401728 0.776271821 0.060287889 1.045791713 0.173715472 0.009135091 0.525143785 8.85E-05 4.052872097 -0.765895265 LIHGEDS(ph)DS(ph)EGEEEGR ddPTM_HeLa_CUDC101_4h_R1 1 LIHGEDSDSEGEEEGR 16 0 Q9C0C9 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 2 0 LIHGEDS(1)DS(1)EGEEEGR 116.79 0.0075042 22459000 3034.6 2561.9 2382.1 2597.7 2832.9 2596.2 2273.9 1649.9 2938.1 2635.6 TRUE FALSE FALSE 2678.888788 2640.829102 2510.883531 2703.645434 2623.922611 2546.681811 2361.605085 1837.717947 2816.990274 2619.923334 1.022506557 1.007979534 0.958380537 1.031955935 1.001526486 0.972044402 0.901402363 0.701439589 1.075218591 1 11.35530888 -4.052834901 1.259132343 1.008099959 0.436529839 0.918514572 0.028243819 0.287213352 0.273598883 0.002796077 0.23953877 8.85E-05 4.052834901 -0.57157012 VYT(ph)HEVVTLWYR ddPTM_HeLa_CUDC101_4h_R1 1 VYTHEVVTLWYR 12 0 A0A087WZZ9;P06493;E5RIU6 A0A087WZZ9 CDK1 Cyclin-dependent kinase 1 1 0 VYT(1)HEVVTLWYR 150.51 0.0028673 44485000 688.59 374.69 291.63 427.17 560.89 525.36 536.42 681.32 302.35 452.02 TRUE FALSE FALSE 607.874524 386.2337548 307.3963999 444.591839 519.5142622 515.3396333 557.1098991 758.8787148 289.887005 449.3313649 1.352842404 0.859574436 0.684119614 0.989452047 1.156194076 1.146903318 1.239864257 1.688906616 0.645151947 1 8.81163596 -4.051313572 1.523340538 1.096553185 2.188546597 0.414588777 0.228246468 1.530056845 2.180439942 0.032115469 2.903603239 8.89E-05 4.051313572 1.091993413 SKTS(ph)PVVSGSSSK ddPTM_HeLa_CUDC101_4h_R1 2 SKTSPVVSGSSSK 13 1 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 S(0.024)KT(0.091)S(0.879)PVVS(0.006)GSSSK;S(0.05)KT(0.234)S(0.716)PVVSGSSSK ; 81.01 0.016399 91382000 15409.4 8662.7 15624.1 15517.1 13240.3 11542.6 11385.1 4819.3 16536.4 17852.6 TRUE FALSE FALSE 13603.13349 8929.587519 16468.78611 16149.95441 12263.58945 11322.44414 11824.22712 5367.909632 15854.76259 17746.41194 0.766528667 0.503177067 0.928006527 0.910040546 0.691046139 0.638013147 0.666288327 0.302478588 0.893406659 1 14.11523974 -4.051167712 0.134860764 1.087652712 5.06E-21 0.46852709 0.149550541 21.90828585 0.464043311 0.662901844 4.409155395 8.89E-05 4.051167712 -1.087652712 T(ph)PSPKEEDEEPES(ph)PPEKK ddPTM_HeLa_CUDC101_4h_R1 2 TPSPKEEDEEPESPPEKK 18 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 0 T(0.972)PS(0.028)PKEEDEEPES(1)PPEKK;T(0.892)PS(0.108)PKEEDEEPES(1)PPEKK ; 74.278 0.018727 82415000 8651.4 7897 7781.6 7622.7 8530.6 9529.6 9622.2 14891.6 8390 9453.3 TRUE FALSE FALSE 7637.296007 8140.29721 8202.296834 7933.586654 7901.314633 9347.838757 9993.331477 16586.79955 8044.160649 9397.071351 0.812731512 0.866258955 0.872856715 0.844261617 0.840827353 0.994760858 1.063451697 1.765103076 0.856028474 1 13.19799549 -4.049463216 1.648083243 0.895736328 2.493730511 0.953314864 0.058305193 0.3551021 0.596609031 0.011358085 1.060421594 8.92E-05 4.049463216 1.597994183 VKEDDLDVVLS(ph)PQRR ddPTM_HeLa_CUDC101_4h_R1 1 VKEDDLDVVLSPQRR 15 2 B1AKL4;Q9NRA8;Q9NRA8-3;B1AKL5 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 VKEDDLDVVLS(1)PQRR 88.548 0.010526 14854000 2296.2 1994.6 2229 1890.1 2671.3 1775 1762.8 882.22 2240.7 1867.8 TRUE FALSE FALSE 2027.042917 2056.051262 2349.506482 1967.186448 2474.243521 1741.144832 1830.791786 982.6483587 2148.337398 1856.690243 1.091750724 1.10737441 1.265427279 1.059512461 1.332609751 0.937768074 0.986051278 0.529247333 1.157079058 1 10.85851743 -4.047806025 1.622369552 1.082021721 0.0662632 0.703976994 0.113232339 0.825486419 1.336137021 0.016491433 1.54697938 8.96E-05 4.047806025 -1.01575852 MPFLSISS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 MPFLSISSPK 10 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MPFLSIS(0.02)S(0.98)PK;MPFLS(0.041)IS(0.287)S(0.672)PK ; 184.36 3.52E-11 243020000 10168.9 6635.2 5468.9 7024.6 7047 5955.7 4964.9 3120.6 6572.7 6658.4 TRUE FALSE FALSE 8976.916957 6839.622647 5764.565277 7311.093551 6527.15685 5842.104945 5156.397856 3475.83649 6301.770524 6618.795541 1.356276516 1.033363639 0.870938714 1.104595769 0.986154778 0.882653786 0.779053806 0.525146376 0.95210231 1 12.69235299 -4.047658311 0.528176599 1.151174819 2.14E-14 0.582157964 0.132508947 2.449788488 0.392858365 0.031834459 1.822494585 8.96E-05 4.047658311 -1.151174819 APVVTGK(ac)FGERPPPK ddPTM_HeLa_CUDC101_4h_R1 1 APVVTGKFGERPPPK 15 2 D6RIV8;Q06330-7 D6RIV8 RBPJ Recombining binding protein suppressor of hairless 0 1 APVVTGK(1)FGERPPPK 91.355 0.036914 4760300 845 922.1 1110.2 1237.7 1740.4 1457.1 2043.5 2057.6 759.73 540.56 FALSE TRUE FALSE 745.9503809 950.508808 1170.22077 1288.178756 1612.014159 1429.308245 2122.31848 2291.828867 728.4136078 537.3447251 1.388215695 1.768899486 2.177784047 2.39730418 2.99996275 2.659946545 3.949640483 4.265099777 1.355579712 1 9.069704113 -3.376436612 0.254489045 0.876307599 9.232844035 0.943284273 0.247831935 1.847727093 0.065197918 0.129825263 5.232962261 0.000420304 3.376436612 8.356536436 up VLS(ph)TSTDLEAAVADALKKPVR ddPTM_HeLa_CUDC101_4h_R1 2 VLSTSTDLEAAVADALKKPVR 21 2 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 0 VLS(0.407)T(0.407)S(0.08)T(0.105)DLEAAVADALKKPVR;VLS(0.424)T(0.424)S(0.076)T(0.076)DLEAAVADALKKPVR ; 128.95 1.99E-07 137424000 20844.2 17332.3 17250.7 16942.2 18256.5 16010.7 15483.6 12887.3 19676.7 14183.2 TRUE FALSE FALSE 18400.87447 17866.28762 18183.32502 17633.17615 16909.75437 15705.32257 16080.80764 14354.33814 18865.6181 14098.8377 1.305134144 1.267217058 1.289703833 1.250682966 1.199372227 1.11394449 1.140576832 1.018122093 1.338097402 1 13.78328861 -4.047469542 1.269504518 1.177419774 0.885487492 0.198454275 0.101558975 3.943197616 3.787788015 0.019328111 1.698109174 8.96E-05 4.047469542 -0.291932281 ASPSCSS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 2 ASPSCSSPTR 10 0 Q8N5I9;J3KN91;A0A087WT30 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 ASPSCS(0.025)S(0.957)PT(0.017)R;ASPS(0.002)CS(0.02)S(0.793)PT(0.184)R ; 111.27 0.0079063 201256000 8593.3 4409 8129.3 8662.4 5909.1 5623.3 5662.3 2818.3 7733.5 8251.3 TRUE FALSE FALSE 7586.006401 4544.836064 8568.794548 9015.690114 5473.197466 5516.044922 5880.696808 3139.12388 7414.721857 8202.220901 0.924872238 0.554098228 1.044691999 1.099176701 0.667282378 0.672506262 0.716963964 0.38271633 0.903989535 1 13.00179888 -4.047358472 0.493100357 0.955848742 2.41E-16 0.473989022 0.160713337 3.150873425 0.443393138 0.033857424 1.822066329 8.97E-05 4.047358472 -0.955848742 SLGAWNLENLRS(ph)PEEVDKESQR ddPTM_HeLa_CUDC101_4h_R1 2 SLGAWNLENLRSPEEVDKESQR 22 2 P48681 P48681 NES Nestin 1 0 SLGAWNLENLRS(0.999)PEEVDKES(0.001)QR;S(0.001)LGAWNLENLRS(0.994)PEEVDKES(0.006)QR ; 65.16 0.0065171 46988000 2902.04 2411.22 2793.42 2775.57 2714.85 2365.4 2163.92 1412.97 2834.87 2572.15 TRUE FALSE FALSE 2561.86727 2485.50683 2944.440735 2888.769742 2514.580924 2320.283936 2247.383119 1573.816793 2718.015459 2556.850737 1.001961997 0.97209696 1.151588824 1.129815558 0.983468017 0.907477274 0.878965317 0.615529397 1.063032511 1 11.32015223 -4.046186463 1.091994919 1.017967235 0.268945418 0.804427643 0.063645403 0.887821098 0.620389369 0.010117321 0.853990225 8.99E-05 4.046186463 -0.749021817 RNS(ph)VERPAEPVAGAATPSLVEQQK ddPTM_HeLa_CUDC101_4h_R1 2 RNSVERPAEPVAGAATPSLVEQQK 24 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 RNS(0.99)VERPAEPVAGAAT(0.008)PS(0.002)LVEQQK;RNS(0.989)VERPAEPVAGAAT(0.007)PS(0.004)LVEQQK ; 47.288 0.022099 214167000 4012.6 3747.7 4207 4149.4 4172 5156.3 5407.2 6683.6 3839 4499 TRUE FALSE FALSE 3542.249111 3863.162195 4434.443145 4318.630467 3864.239872 5057.952168 5615.757515 7444.434008 3680.754795 4472.239748 0.792052598 0.86380928 0.991548619 0.965652718 0.86405025 1.130966239 1.255692412 1.664587417 0.823022692 1 12.12678181 -4.045305348 0.911712175 0.902028905 2.347613393 0.91573855 0.072552414 0.703108018 0.337190444 0.013932574 1.103413255 9.01E-05 4.045305348 1.445584487 S(ph)SPNVANQPPSPGGK ddPTM_HeLa_CUDC101_4h_R1 2 SSPNVANQPPSPGGK 15 0 A8MQ02;J3KN01;P55196-3;P55196;P55196-5;Q5TIG5;P55196-2;P55196-6;P55196-1 A8MQ02 MLLT4 Afadin 1 0 S(0.977)S(0.023)PNVANQPPSPGGK;S(0.933)S(0.067)PNVANQPPSPGGK ; 193.41 4.07E-16 17638200 5518.9 5243.2 4705.5 4553.9 4494.8 4866.8 3397.3 2707.2 4785.9 4958.6 TRUE FALSE FALSE 4871.982908 5404.736777 4959.893563 4739.627726 4163.227559 4773.973899 3528.334999 3015.376705 4588.623176 4929.106027 0.988411059 1.096494323 1.006246069 0.961559297 0.844621223 0.96852733 0.715816414 0.611749207 0.930924016 1 12.2671103 -4.041861497 0.7095042 1.002671513 0.220938209 0.812419324 0.060586733 0.960222828 0.27449283 0.009080974 0.644066695 9.08E-05 4.041861497 -0.781733304 SAMPFTASPAS(ph)STTAR ddPTM_HeLa_CUDC101_4h_R1 1 SAMPFTASPASSTTAR 16 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 SAMPFT(0.005)AS(0.222)PAS(0.711)S(0.057)T(0.005)TAR 244.57 1.36E-55 72419000 1868.7 1786 1683.4 1867.9 2242.7 1579.5 1562.2 892.67 2178 1797.6 TRUE FALSE FALSE 1649.653819 1841.024543 1774.409696 1944.081036 2077.260489 1549.373669 1622.454577 994.2879445 2088.221918 1786.907795 0.923189111 1.030285137 0.993005739 1.087958226 1.162488907 0.867069735 0.907967709 0.556429351 1.168623207 1 10.80324948 -4.041496469 1.550840529 0.988960887 0.184556008 0.67882985 0.095362882 0.799574285 1.160041337 0.011951366 1.144814497 9.09E-05 4.041496469 -0.804404878 AYPGYYFT(ph)GDGAY(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 AYPGYYFTGDGAYR 14 0 Q9NUB1-3;Q9NUB1-4;Q9NUB1-2;Q9NUB1 Q9NUB1-3 ACSS1 "Acetyl-coenzyme A synthetase 2-like, mitochondrial" 2 0 AYPGY(0.002)Y(0.002)FT(0.996)GDGAY(0.999)R;AYPGY(0.003)Y(0.003)FT(0.995)GDGAY(0.999)R ; 56.569 0.029163 16468000 7492.9 5993.2 5714.8 5045.4 8233.7 7340 7048.8 7779.9 7607.4 6979.3 TRUE FALSE FALSE 6614.59362 6177.843388 6023.759374 5251.17322 7626.316355 7200.001729 7320.674577 8665.532369 7293.819752 6937.786813 0.95341552 0.890463134 0.868253744 0.756894578 1.099243399 1.037795182 1.055188747 1.249034109 1.051317942 1 12.76025979 -4.038271607 0.952105997 0.953134266 1.499622265 0.510318224 0.091092393 1.879735036 0.977441516 0.014133285 1.165154604 9.16E-05 4.038271607 0.546487999 STTQELMEDDR ddPTM_HeLa_CUDC101_4h_R1 2 STTQELMEDDR 11 0 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 ; ; 163.66 0.00034871 12853000 2652.9 2329.1 2013.24 1959.89 2364.3 2156.7 2096.1 2273.37 2072 2260.6 FALSE FALSE TRUE 2341.931084 2400.85681 2122.081844 2039.822786 2189.890299 2115.564541 2176.947279 2532.161252 1986.591283 2247.153851 1.042176566 1.068398948 0.944342037 0.90773615 0.974517298 0.941441789 0.968757559 1.126830391 0.88404774 1 11.13388319 -6.749933313 24.99894474 1.024109378 0.971969478 0 0.072323142 312.7632813 679531.4053 0.009041502 0.012724089 1.78E-07 6.749933313 -0.0521399 RPSASS(ph)PNNNTAAK ddPTM_HeLa_CUDC101_4h_R1 2 RPSASSPNNNTAAK 14 1 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 0 RPS(0.018)AS(0.057)S(0.924)PNNNTAAK;RPS(0.003)AS(0.003)S(0.994)PNNNTAAK ; 112.91 0.0015309 55217000 7069.3 4720.9 7146.5 6916.5 5675.2 4972 4569.5 2464 7069.5 8085.6 TRUE FALSE FALSE 6240.64737 4866.345333 7532.861407 7198.584766 5256.551803 4877.167384 4745.747146 2744.4918 6778.092218 8037.506492 0.776440725 0.605454607 0.937213726 0.895624131 0.654002806 0.606801051 0.590450179 0.341460601 0.843307837 1 12.97253228 -4.036858488 0.239207257 0.963519533 1.37E-35 0.624123566 0.117118017 6.102314307 0.260639069 0.095813851 1.778034563 9.19E-05 4.036858488 -0.963519533 TCPSLSPTS(ph)PLNNK ddPTM_HeLa_CUDC101_4h_R1 2 TCPSLSPTSPLNNK 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 0 TCPSLS(0.008)PT(0.275)S(0.717)PLNNK;TCPS(0.001)LS(0.07)PT(0.07)S(0.859)PLNNK ; 216.27 2.46E-24 31800000 5911 4888.9 4803.2 5002.3 4957.3 4546 4236.7 3232.5 4329.1 3818 TRUE FALSE FALSE 5218.12154 5039.521214 5062.875521 5206.315416 4591.609855 4459.292624 4400.110938 3600.474734 4150.652666 3795.290366 1.374893891 1.327835482 1.333988979 1.371783161 1.209817804 1.174954271 1.159360817 0.94866911 1.093632441 1 11.88999455 -4.035984191 1.49405063 1.219860486 0.708560439 0.349266422 0.117245471 2.595265064 3.440869002 0.023527384 2.292230201 9.20E-05 4.035984191 -0.511300047 GT(ph)LSDSEIETNSATSTIFGK ddPTM_HeLa_CUDC101_4h_R1 1 GTLSDSEIETNSATSTIFGK 20 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6;F8W8U2 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 GT(0.497)LS(0.497)DS(0.006)EIETNSATSTIFGK 149.64 2.54E-05 14354000 3543.1 3449.8 2782.7 3127.9 3430 3157.2 2847.5 2436.7 3156.5 3277.7 TRUE FALSE FALSE 3127.783189 3556.084249 2933.141179 3255.469282 3176.975734 3096.98167 2957.329029 2714.084079 3026.387734 3258.204095 0.959971536 1.091424646 0.900232488 0.999160638 0.975069591 0.950518009 0.907656164 0.833000021 0.928851492 1 11.66986126 -4.035806451 0.895321169 0.985246091 0.690596916 0.481210236 0.047691164 1.662840013 0.759434964 0.00648961 0.525059899 9.21E-05 4.035806451 -0.294649175 (ac)AESSESFTMASS(ph)PAQR ddPTM_HeLa_CUDC101_4h_R1 3 AESSESFTMASSPAQR 16 0 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 1 0 AESSESFTMAS(0.136)S(0.863)PAQR;AESSESFTMAS(0.135)S(0.865)PAQR;AESSES(0.001)FT(0.021)MAS(0.391)S(0.587)PAQR ;; 183.31 7.73E-44 34196400 2886.87 3035.2 2367.7 2430.96 3178.83 3166.97 3309.62 4114.32 2963.97 3137.14 TRUE FALSE FALSE 2548.475475 3128.710914 2495.705024 2530.105056 2944.334044 3106.565324 3437.273152 4582.677558 2841.793902 3118.480152 0.817217154 1.003280689 0.800295305 0.81132633 0.944156737 0.996179284 1.102227042 1.46952276 0.911275289 1 11.60662736 -4.031677046 1.184875895 0.904115207 1.986591104 0.860180075 0.069826791 0.771767873 0.625348176 0.012708626 1.167091721 9.30E-05 4.031677046 1.082475898 STVNEK(ac)PK ddPTM_HeLa_CUDC101_4h_R1 2 STVNEKPK 8 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 0 1 ; STVNEK(1)PK;STVNEK(1)PK 134.26 0.0020154 27698000 12418.7 9438.9 8635.7 11399 11392 11183 10477 8883.4 8226.8 7744.2 FALSE TRUE FALSE 10962.99881 9729.701321 9102.572064 11863.90049 10551.63486 10969.70291 10881.1014 9894.650348 7887.687822 7698.137154 1.424110612 1.263903348 1.182438281 1.541139142 1.370673794 1.424981484 1.41347201 1.285330483 1.024622927 1 12.91029366 -9.459985528 0.657414876 0.93091658 1.374026507 0.683165047 0.09547984 0.544254251 0.313583976 0.14642883 0.020453477 3.47E-10 9.459985528 0.443109927 (ac)MEDS(ph)QDLNEQSVKK ddPTM_HeLa_CUDC101_4h_R1 2 MEDSQDLNEQSVKK 14 1 E7ESD5;E9PLN6;F2Z2Y1;O95677-3;O95677-5;O95677-2;O95677-4;O95677 E7ESD5 EYA4 Eyes absent homolog;Eyes absent homolog 4 1 0 MEDS(1)QDLNEQSVKK;MEDS(1)QDLNEQSVKK ; 86.014 0.0066113 17593200 2756.6 2168.44 2529 2387.8 2709.6 3095.9 3061 8028.9 2897.4 2129.8 TRUE FALSE FALSE 2433.475527 2235.247066 2665.72539 2485.184805 2509.718206 3036.850866 3179.063795 8942.877522 2777.967946 2117.131855 1.149420864 1.055790201 1.2591211 1.173845077 1.185433113 1.434417445 1.501589893 4.22405317 1.312137427 1 11.04789541 -4.02879637 1.807551099 1.110761334 7.026308522 0.974047348 0.146633864 0.181439046 0.35290978 0.02012054 2.2221283 9.36E-05 4.02879637 5.915547189 up STVTLSWKPVQK ddPTM_HeLa_CUDC101_4h_R1 2 STVTLSWKPVQK 12 1 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 0 0 ; ; 133.89 0.0011349 1691290 1051.66 883.39 792.66 1020.25 1125.7 1125.53 898.41 700.35 943.76 1096.41 FALSE FALSE TRUE 928.386009 910.6061988 835.5135973 1061.860205 1042.659354 1104.062391 933.0619746 780.0750131 904.8578133 1089.888505 0.851817415 0.835503994 0.766604652 0.974283333 0.956666071 1.013004895 0.856107731 0.715738362 0.830229707 1 10.08996484 -9.281304193 1.01880833 0.999696246 0.876139296 0 0.101014371 0.686126309 1.281093377 0.06051771 0.016513585 5.23E-10 9.281304193 -0.123556949 STYEQVDLIGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 STYEQVDLIGKK 12 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 1 STYEQVDLIGK(1)K 164.04 1.06E-05 429450 328.31 0 154.15 144.15 409.89 244.12 368.62 291.62 266.27 416.55 FALSE TRUE FALSE 289.8259995 0 162.4838153 150.0290601 379.6532313 239.4638177 382.8377969 324.816842 255.2942379 414.0723421 0.699940494 0 0.392404415 0.362325721 0.916876576 0.578313964 0.92456742 0.784444671 0.616545014 1 8.693739031 -8.320078807 1.278638642 0.941617189 0.579458728 0.050629436 0.286153455 0.428084779 1.421896808 0.078835101 0.056424992 4.79E-09 8.320078807 -0.36215846 ILS(ph)PSMASK ddPTM_HeLa_CUDC101_4h_R1 2 ILSPSMASK 9 0 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91;Q8IX09;C9JWI7 A0A494BZT8 TACC3;ERIC-1s Transforming acidic coiled-coil-containing protein 3 1 0 ILS(0.931)PS(0.063)MAS(0.007)K;ILS(0.97)PS(0.03)MASK ; 121.29 0.0053882 147809000 13252.1 11942.2 10476.7 12056.9 12513.7 10441 10115 4757.7 11550.7 10408.3 TRUE FALSE FALSE 11698.70893 12310.12503 11043.10209 12548.6325 11590.58928 10241.85532 10505.13894 5299.297337 11074.57526 10346.39097 1.130704316 1.189798942 1.067338565 1.21285118 1.12025433 0.989896414 1.015343318 0.512188004 1.070380511 1 13.33683999 -4.028283819 1.761466985 1.085211958 3.15E-15 0.864340428 0.069017192 0.576008441 1.060388146 0.011573662 1.264439069 9.37E-05 4.028283819 -1.085211958 STKPVVFSPT(ph)LMLTDEEK ddPTM_HeLa_CUDC101_4h_R1 1 STKPVVFSPTLMLTDEEK 18 1 P40818;P40818-2;A0A075B720 P40818 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 0 STKPVVFS(0.316)PT(0.449)LMLT(0.234)DEEK 77.575 0.013817 19793000 2511.6 2490.3 2369.6 2386.4 2558.1 2401.3 1959.2 1253.9 2622.4 2696.4 TRUE FALSE FALSE 2217.194055 2567.023191 2497.707744 2483.727707 2369.394059 2355.499203 2034.767 1396.638908 2514.303562 2680.361693 0.827199576 0.957715221 0.931854738 0.926639011 0.883982959 0.87879901 0.759138965 0.521063598 0.938046372 1 11.38821198 -4.025456943 1.129131072 0.920826163 0.142524494 0.897103865 0.042049448 0.840123722 0.610229724 0.009480375 0.876216771 9.43E-05 4.025456943 -0.778301669 AEGAATEEEGT(ph)PKESEPQAAAEPAEAK ddPTM_HeLa_CUDC101_4h_R1 1 AEGAATEEEGTPKESEPQAAAEPAEAK 27 1 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 AEGAAT(0.002)EEEGT(0.78)PKES(0.218)EPQAAAEPAEAK 97.94 2.16E-06 137200000 2493 2693.9 2378.5 2310.6 2484.9 2893.1 2711.5 3710.5 2109 2990.1 TRUE FALSE FALSE 2200.774319 2776.895866 2507.088905 2404.836255 2301.593878 2837.918938 2816.083463 4132.888322 2022.066127 2972.314752 0.740424384 0.934253636 0.843480288 0.809078599 0.774343927 0.954784124 0.947437838 1.390461195 0.680300135 1 11.53737118 -4.024109566 1.687583665 0.867154456 1.871712071 0.740602449 0.096285915 0.82770273 1.380050289 0.014797423 1.622845472 9.46E-05 4.024109566 1.004557615 EVAEAATGEDASSPPPKT(ph)EAASDPQHPAASEGAAAAAASPPLLR ddPTM_HeLa_CUDC101_4h_R1 1 EVAEAATGEDASSPPPKTEAASDPQHPAASEGAAAAAASPPLLR 44 1 K7ERT7;Q99536-3;Q99536 K7ERT7 VAT1 Synaptic vesicle membrane protein VAT-1 homolog 1 0 EVAEAATGEDAS(0.063)S(0.063)PPPKT(0.81)EAAS(0.063)DPQHPAASEGAAAAAASPPLLR 103.54 5.70E-20 30967000 814.39 639.41 589.94 613.78 617.25 617.5 591.71 268.67 883.04 659.64 TRUE FALSE FALSE 718.9284387 659.1094642 621.8339409 638.8126014 571.7166972 605.7222163 614.5324529 299.2543068 846.6407174 655.7164319 1.096401438 1.005174542 0.948327525 0.974220822 0.871896249 0.923756348 0.937192394 0.456377623 1.291168981 1 9.356928238 -4.02212091 1.367378958 1.018086973 4.98E-77 0.698374495 0.109093803 0.713856804 0.76588301 0.01155784 1.167997238 9.50E-05 4.02212091 -1.018086973 SVGGSGGGS(ph)FGDNLVTR ddPTM_HeLa_CUDC101_4h_R1 4 SVGGSGGGSFGDNLVTR 17 0 P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5 P02545 LMNA Prelamin-A/C;Lamin-A/C 1 0 SVGGSGGGS(1)FGDNLVTR;SVGGSGGGS(1)FGDNLVTR;SVGGSGGGS(1)FGDNLVTR;SVGGS(0.01)GGGS(0.99)FGDNLVTR ;;; 215.64 3.23E-24 669920000 4139.41 3423.16 3399.72 3636.28 4723.6 6145.3 6878 10414 4746.75 4874.03 TRUE FALSE FALSE 3654.194635 3528.623502 3583.519147 3784.583216 4375.149439 6028.088641 7143.286764 11599.48767 4551.086956 4845.039053 0.75421366 0.728296194 0.739626473 0.78112543 0.903016341 1.244177513 1.474350709 2.394095804 0.939329262 1 12.24229258 -4.021042164 0.998034482 0.848539376 3.83823085 0.957722024 0.100716937 0.491287131 0.275198124 0.019704006 1.755897528 9.53E-05 4.021042164 2.989691474 up DSGSDQDLDGAGVRAS(ph)DLEDEESAAR ddPTM_HeLa_CUDC101_4h_R1 2 DSGSDQDLDGAGVRASDLEDEESAAR 26 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 DSGSDQDLDGAGVRAS(0.988)DLEDEES(0.012)AAR;DSGSDQDLDGAGVRAS(0.995)DLEDEES(0.005)AAR ; 79.82 3.61E-05 68997000 3500.8 3067.2 2503.4 3035 2655.1 2629.8 2683.1 1957.76 2922.1 3208.2 TRUE FALSE FALSE 3090.441531 3161.696796 2638.741376 3158.780418 2459.238563 2579.640947 2786.588066 2180.623485 2801.649801 3189.117484 0.969058539 0.991401795 0.827420561 0.990487316 0.771134515 0.808888653 0.873780311 0.683770195 0.878503164 1 11.63894153 -4.020416142 0.281127784 1.007858237 0.475512694 0.474469956 0.074342492 4.065815283 0.217475976 0.030229194 0.763760571 9.54E-05 4.020416142 -0.532345543 TMCPLLSMKPGEYSYFS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 TMCPLLSMKPGEYSYFSPR 19 1 Q15003;C9J470;E9PHA2;Q15003-2 Q15003 NCAPH Condensin complex subunit 2 1 0 TMCPLLSMKPGEYS(0.001)Y(0.001)FS(0.998)PR;TMCPLLSMKPGEY(0.016)S(0.175)Y(0.001)FS(0.808)PR ; 107.06 0.0002053 37930000 3069.2 2826.6 2702.29 2377.81 3379.8 2261.7 2234.93 1320.24 3029.27 2699.99 TRUE FALSE FALSE 2709.433029 2913.684196 2848.383971 2474.78737 3130.478888 2218.561841 2321.131999 1470.530785 2904.402208 2683.930339 1.009501994 1.085603509 1.061273435 0.922075858 1.166378591 0.826609323 0.864825724 0.547901994 1.082145153 1 11.39013151 -4.019824863 1.058210887 1.016854435 0.118923655 0.773247784 0.080473207 0.859036415 0.541581748 0.010615705 0.97525667 9.55E-05 4.019824863 -0.89793078 S(ph)HSSSEAYEPR ddPTM_HeLa_CUDC101_4h_R1 1 SHSSSEAYEPR 11 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 S(0.697)HS(0.26)S(0.042)S(0.002)EAYEPR 88.163 0.017629 19189000 1511.9 1326.8 1556.8 1306.7 1930 2157 1735.9 1513.8 1781.2 2198.6 TRUE FALSE FALSE 1334.677374 1367.677135 1640.965317 1359.992874 1787.627745 2115.858819 1802.854244 1686.124873 1707.778182 2185.522629 0.610690256 0.62578951 0.750834283 0.622273527 0.817940625 0.968124873 0.824907608 0.77149733 0.781404941 1 11.0937626 -4.018293942 15.94776923 0.793603395 0.76026079 0 0.129452771 10928786.94 462743378.4 0.02372534 4743836.104 9.59E-05 4.018293942 -0.033342605 SVDEVFDEVVQIFDKEG ddPTM_HeLa_CUDC101_4h_R1 2 SVDEVFDEVVQIFDKEG 17 1 P30085-2;P30085;A0A494BXC7;P30085-3 P30085-2 CMPK1 UMP-CMP kinase 0 0 ; ; 227.63 1.30E-31 164451000 2302.93 1998.04 2140.07 2031.83 2713.85 2225.46 2430.17 2050.23 2399.28 2129.97 FALSE FALSE TRUE 2032.984036 2059.597244 2255.768658 2114.69681 2513.654692 2183.013058 2523.902471 2283.619896 2300.380663 2117.300844 0.960177219 0.972746622 1.065398271 0.998770116 1.1871977 1.031035842 1.19203772 1.078552395 1.086468496 1 11.04801056 -6.14616121 1.29749784 0.980882178 1.120764698 0.321877134 0.063986539 0.216979705 0.71969448 0.008182592 0.016830098 7.14E-07 6.14616121 0.139882521 SVDVILDDDLVDK ddPTM_HeLa_CUDC101_4h_R1 4 SVDVILDDDLVDK 13 0 A0A499FHX9;J3KQ69;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 0 0 ;;; ;;; 208.72 6.26E-23 107220000 19386.3 16818.7 15870.3 15173.3 16502.5 16836.8 16737 14293.3 18289.4 16998 FALSE FALSE TRUE 17113.8673 17336.86421 16728.29642 15792.13276 15285.14345 16515.66609 17382.5517 15920.3915 17535.50319 16896.89514 1.012840949 1.026038457 0.990021911 0.934617433 0.904612553 0.977437923 1.028742355 0.942208102 1.037794402 1 14.04447055 -6.489803011 7.179124645 1.007767138 0.959798321 0.432912265 0.032211938 0.197077235 34.16951079 0.004981453 0.007514681 3.24E-07 6.489803011 -0.047968817 RPAEATSSPT(ph)SPERPR ddPTM_HeLa_CUDC101_4h_R1 1 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 1 0 RPAEAT(0.03)S(0.227)S(0.19)PT(0.551)S(0.001)PERPR 98.804 0.013332 191020000 664.02 548.21 446.53 625.95 663.73 613.55 725.43 1052.1 613.11 568.55 TRUE FALSE FALSE 586.1845822 565.0997003 470.6707625 651.4789466 614.7679602 601.847556 753.4100781 1171.866811 587.8373463 565.1682393 1.037185994 0.999878728 0.832797616 1.152716839 1.087760984 1.064899819 1.333072218 2.073483133 1.04011037 1 9.142536583 -4.016946064 1.36653988 1.014493318 3.092954425 0.94497633 0.07660215 0.334157991 0.354642769 0.010809976 1.119561074 9.62E-05 4.016946064 2.078461107 up SVEAAAELSAK ddPTM_HeLa_CUDC101_4h_R1 1 SVEAAAELSAK 11 0 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 0 0 168.74 0.0032198 806870 442.93 268.05 404.01 443.47 412.13 389.02 397.12 327.7 289.23 405.52 FALSE FALSE TRUE 391.0104168 276.3083028 425.8520027 461.5566234 381.727991 381.6000917 412.4370514 365.0040434 277.307817 403.107949 0.969989349 0.685444937 1.056421744 1.144995093 0.946962202 0.946644919 1.023142938 0.905474686 0.687924457 1 8.655022422 -5.294416514 0.002991673 1.934411925 1.80E-05 0 0.147134747 390834.0422 271.7942612 86620.1329 89129.49158 5.08E-06 5.294416514 -1.934393887 SVEAAAELSAK(ac)DLK ddPTM_HeLa_CUDC101_4h_R1 1 SVEAAAELSAKDLK 14 1 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 0 1 SVEAAAELSAK(1)DLK 128.21 0.003625 587340 0 136.86 0 0 156.23 0 0 0 0 0 FALSE TRUE FALSE 0 141.0764944 0 0 144.7052242 0 0 0 0 0 0 EEIFRES(ph)PIPIEIPPAAVPSYVPESR ddPTM_HeLa_CUDC101_4h_R1 2 EEIFRESPIPIEIPPAAVPSYVPESR 26 1 Q5TC82-2;Q5TC82 Q5TC82-2 RC3H1 Roquin-1 1 0 EEIFRES(1)PIPIEIPPAAVPSYVPESR;EEIFRES(1)PIPIEIPPAAVPSYVPESR ; 71.071 0.0001987 9942800 1713.93 1478.98 1538.07 1812.8 1512.75 1347.6 1215.9 650.95 1395.68 1371.54 TRUE FALSE FALSE 1513.025724 1524.545621 1621.222717 1886.73382 1401.157446 1321.896775 1262.79767 725.0515168 1338.14948 1363.382019 1.109759189 1.118208689 1.189118452 1.383862918 1.027707148 0.969571812 0.926224384 0.531803637 0.981492686 1 10.41297415 -4.012358315 1.234184811 1.089814778 4.20E-07 0.704061672 0.11282914 1.139142949 0.972875932 0.01801706 1.823265253 9.72E-05 4.012358315 -1.089814359 SVEEEEQVWR ddPTM_HeLa_CUDC101_4h_R1 2 SVEEEEQVWR 10 0 A0A087WVV2;Q9P2E9-3;Q9P2E9;A0A087WU26;F8W7S5 A0A087WVV2 RRBP1 Ribosome-binding protein 1 0 0 ; ; 142 0.0059108 13809000 2619.5 2100.81 2184.67 2074.4 2453.9 2472.7 1921.7 1933.45 2230.9 2494.1 FALSE FALSE TRUE 2312.446181 2165.533466 2302.779868 2159.002998 2272.880686 2425.537367 1995.820613 2153.546133 2138.941358 2479.264982 0.932714412 0.873457852 0.92881555 0.870823818 0.916755854 0.978329216 0.805004962 0.868622817 0.862732049 1 11.27569676 -13.52287874 0.079035525 1.384851383 0.77840329 0 0.060894187 106.5668028 0.647262165 7.132230163 0.80996469 3.00E-14 13.52287874 -0.606448093 NINPST(ph)ANSPK ddPTM_HeLa_CUDC101_4h_R1 1 NINPSTANSPK 11 0 P46937-6;P46937-7;P46937;P46937-9;H0YCI3;P46937-4 P46937-6 YAP1 Transcriptional coactivator YAP1 1 0 NINPS(0.007)T(0.871)ANS(0.122)PK 167.93 3.20E-05 34591000 4503.2 4402 3734.2 3794.7 3965.6 3775.5 3248.2 1707.7 4377 3678.6 TRUE FALSE FALSE 3975.341722 4537.620402 3936.082147 3949.464268 3673.065589 3703.488628 3373.484162 1902.097665 4196.578207 3656.719524 1.087133344 1.240899219 1.076397061 1.080056658 1.004470145 1.012789907 0.922543865 0.520165042 1.147634698 1 11.83633426 -4.00986716 1.392488088 1.06066619 3.88E-15 0.854981575 0.069725448 0.660005487 0.718443594 0.01067824 1.154360461 9.78E-05 4.00986716 -1.06066619 ITS(ph)EAEDLVANFFPK ddPTM_HeLa_CUDC101_4h_R1 1 ITSEAEDLVANFFPK 15 0 A0A087WTV2;K9J957;P61289;P61289-3;P61289-2;B7Z8D3;K7ENH2 A0A087WTV2 PSME3 Proteasome activator complex subunit 3 1 0 IT(0.023)S(0.977)EAEDLVANFFPK 122.66 0.00086624 52187000 1906.9 1925 1506.7 1682.2 2193.5 1906.3 2137.5 2302 1751.3 1875.3 TRUE FALSE FALSE 1683.376073 1984.306968 1588.15676 1750.807387 2031.689875 1869.940504 2219.944091 2564.050375 1679.110673 1864.145632 0.903028199 1.0644592 0.851948867 0.939200971 1.089877228 1.003108594 1.19086409 1.375456043 0.900740073 1 10.86429886 -4.008506422 0.853318748 0.955123093 1.797548164 0.80211542 0.06663058 1.015722224 0.407383514 0.010337377 0.886177898 9.81E-05 4.008506422 0.842425071 SVFALTNGIYPHK ddPTM_HeLa_CUDC101_4h_R1 1 SVFALTNGIYPHK 13 0 Q02878 Q02878 RPL6 60S ribosomal protein L6 0 0 112.64 0.0033215 647280 73.347 243.63 163.95 151.8 273.85 248.17 277.89 219.93 145.68 75.697 FALSE FALSE TRUE 64.74937585 251.1359515 172.8136329 157.9910601 253.6486311 243.4365707 288.6083104 244.9659422 139.6750087 75.24675088 0.860493976 3.337498943 2.296625846 2.09963963 3.370891475 3.235177172 3.835491992 3.255501923 1.856226443 1 6.233557383 -6.833909986 0.714652923 0.857570065 3.439984954 0.572719196 0.650606121 0.222488224 0.231924102 0.140971837 0.225195629 1.47E-07 6.833909986 2.582414889 SVFDVLDGEEMRR ddPTM_HeLa_CUDC101_4h_R1 1 SVFDVLDGEEMRR 13 1 Q8N1G2 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 0 0 88.021 0.021543 1546400 860.88 735.83 760.71 712.06 987.74 968.36 976.15 834.38 951.62 704.92 FALSE FALSE TRUE 759.9689514 758.5000501 801.8362836 741.1008846 914.8763881 949.8901464 1013.800432 929.3624465 912.3938208 700.7271045 1.084543393 1.08244714 1.144291806 1.057616981 1.305610104 1.355577857 1.446783528 1.326283 1.30206726 1 9.452708891 -5.673489686 2.136726812 1.051271943 1.38637605 0.593101326 0.092887097 0.072377602 0.670039536 0.008231578 0.018811184 2.12E-06 5.673489686 0.335104106 SSS(ph)PPILTKPTLK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPPILTKPTLK 13 1 A0A3B3IS53;A0A3F2YNX6;Q92794;A0A3B3ITI3 A0A3B3IS53 KAT6A Histone acetyltransferase KAT6A 1 0 S(0.217)S(0.217)S(0.565)PPILT(0.001)KPTLK 64.04 0.038035 35562000 4401.8 3893.4 3577.8 4028.9 3453.3 4108.1 3030.7 2269.4 4020.2 3877.3 TRUE FALSE FALSE 3885.827677 4013.351039 3771.22669 4193.215956 3198.556939 4029.744837 3147.595114 2527.739323 3854.485654 3854.237647 1.008196181 1.041282714 0.978462419 1.087949509 0.829880571 1.045536162 0.816658287 0.6558338 1.000064347 1 11.91222981 -4.007841575 1.028914937 1.00540232 0.29409364 0.7225302 0.06752012 0.960679448 0.562393529 0.00894056 0.846434321 9.82E-05 4.007841575 -0.71130868 SMS(ph)PTSTPK ddPTM_HeLa_CUDC101_4h_R1 1 SMSPTSTPK 9 0 O94913;E9PKN0;E9PQ01 O94913 PCF11 Pre-mRNA cleavage complex 2 protein Pcf11 1 0 S(0.003)MS(0.906)PT(0.026)S(0.063)T(0.002)PK 116.77 0.006868 54673000 4202.7 3894.9 3935.6 4330.4 4118 4458.1 4582.2 5899.6 3827 4384.1 TRUE FALSE FALSE 3710.065877 4014.897252 4148.370441 4507.01243 3814.223344 4373.06917 4758.936989 6571.186617 3669.24944 4358.023178 0.851318528 0.921265695 0.951892698 1.034187347 0.875218692 1.003452481 1.091994419 1.507836546 0.841952713 1 12.08945815 -4.00677453 1.372244321 0.933777142 2.074965521 0.894410079 0.059748071 0.560035089 0.588202466 0.009557278 1.041633678 9.85E-05 4.00677453 1.141188379 KIAELEEEQSQGSTTNS(ph)DWMK ddPTM_HeLa_CUDC101_4h_R1 2 KIAELEEEQSQGSTTNSDWMK 21 1 P46821;D6RA40;D6RA32 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KIAELEEEQS(0.002)QGS(0.009)T(0.041)T(0.032)NS(0.917)DWMK;KIAELEEEQS(0.01)QGS(0.081)T(0.081)T(0.06)NS(0.768)DWMK ; 102.05 8.84E-05 36790000 5891.5 4992.7 4635.7 4955.5 7329.3 6194 6176.6 6765.5 6088.4 6377.5 TRUE FALSE FALSE 5200.907301 5146.519169 4886.319964 5157.606709 6788.632141 6075.85977 6414.833531 7535.657173 5837.433575 6339.566346 0.820388496 0.81180934 0.770765648 0.813558283 1.070835412 0.958403058 1.011872608 1.188670764 0.92079383 1 12.63016844 -4.004774623 0.825723548 0.893173568 1.455261889 0.55762113 0.085095189 2.518863399 0.941517255 0.016726034 1.422986456 9.89E-05 4.004774623 0.562088321 TADSSS(ph)SEDEEEYVVEK ddPTM_HeLa_CUDC101_4h_R1 1 TADSSSSEDEEEYVVEK 17 0 P45973;F8VNY3 P45973 CBX5 Chromobox protein homolog 5 1 0 T(0.004)ADS(0.225)S(0.06)S(0.562)S(0.148)EDEEEYVVEK 181.97 8.43E-11 99644000 2287.3 1735.6 2170.3 1971 1987.6 1748.6 1495.1 934.18 2039.1 2037.1 TRUE FALSE FALSE 2019.186161 1789.071779 2287.632983 2051.385899 1840.978708 1715.248368 1552.766508 1040.523275 1955.047435 2024.983239 0.997137222 0.883499549 1.129704651 1.013038459 0.909132813 0.847043242 0.766804622 0.513842908 0.965463515 1 10.98369425 -4.004766257 0.79752414 1.000492013 0.049411331 0.855883882 0.061120487 0.842831985 0.293790477 0.009344995 0.779236866 9.89E-05 4.004766257 -0.951080682 ERLNS(ph)SENGEDR ddPTM_HeLa_CUDC101_4h_R1 1 ERLNSSENGEDR 12 1 Q7L4I2;Q7L4I2-2;H0YGP9;E1B6W4 Q7L4I2 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 0 ERLNS(0.756)S(0.244)ENGEDR 88.78 0.012969 9037400 1189.2 1081.2 811.87 1184.5 1426.8 1257.3 1193 1059.7 1307.9 1370.6 TRUE FALSE FALSE 1049.803779 1114.51049 855.762148 1232.80903 1321.547807 1233.319097 1239.01441 1180.331965 1253.987808 1362.44761 0.770527814 0.818020805 0.628106462 0.904848759 0.969980641 0.905223135 0.909403342 0.866332001 0.920393415 1 10.41198504 -4.00430987 16.26453346 0.875454248 0.858636016 0 0.102400324 24660823.37 836260995.4 0.016754822 7205073.828 9.90E-05 4.00430987 -0.016818231 SVGDGETVEFDVVEGEK ddPTM_HeLa_CUDC101_4h_R1 2 SVGDGETVEFDVVEGEK 17 0 H0Y449;P67809;A0A0D9SEI8;Q9Y2T7;P16989-2;P16989-3;P16989 H0Y449;P16989-2 YBX1;YBX3;YBX2 Nuclease-sensitive element-binding protein 1;Y-box-binding protein 2;Y-box-binding protein 3 0 0 ; ; 222.81 5.37E-32 289980000 8238.5 8109.7 7510.8 7641.2 8795 8442.1 7661.4 6911 9293.6 9346.9 FALSE FALSE TRUE 7272.795519 8359.550245 7916.856567 7952.841164 8146.210372 8281.081008 7956.902764 7697.720305 8910.513874 9291.304223 0.782752921 0.899717633 0.852071612 0.855944545 0.876756392 0.891272184 0.856381685 0.82848652 0.95901648 1 13.18166541 -9.505412732 1.237257257 1.000500802 0.850237894 0.682322193 0.033438229 0.206033533 0.561477144 0.026293136 0.006272305 3.12E-10 9.505412732 -0.150262908 GSPATS(ph)PHLGR ddPTM_HeLa_CUDC101_4h_R1 1 GSPATSPHLGR 11 0 E9PNR2;Q13671-2;Q13671 E9PNR2 RIN1 Ras and Rab interactor 1 1 0 GSPAT(0.182)S(0.818)PHLGR 88.101 0.017685 10585000 2397.6 1483.9 1467.3 1472.8 2195.9 1921.6 1989.9 2236.3 2455.6 1597 TRUE FALSE FALSE 2116.556963 1529.6172 1546.626676 1532.86715 2033.912832 1884.948682 2066.65111 2490.871353 2354.379129 1587.500973 1.333263411 0.963537803 0.974252427 0.965585014 1.281204148 1.187368521 1.301826673 1.569051859 1.483072558 1 10.63254176 -4.003503652 1.035222668 1.123620983 2.005609905 0.374345189 0.168293235 2.125363112 1.252117197 0.024269084 2.340692663 9.92E-05 4.003503652 0.881988923 KLSDASDERGEPDLASGSDVNGS(ph)TESFEMVIEEATIDSATK ddPTM_HeLa_CUDC101_4h_R1 1 KLSDASDERGEPDLASGSDVNGSTESFEMVIEEATIDSATK 41 2 E7ER68;Q658Y4 E7ER68 FAM91A1 Protein FAM91A1 1 0 KLS(0.165)DAS(0.165)DERGEPDLAS(0.034)GS(0.034)DVNGS(0.2)T(0.2)ES(0.2)FEMVIEEAT(0.001)IDSATK 48.08 0.007689 4907400 932.73 943.17 697.03 937.64 1143.7 904.34 1226.8 1157.8 775.42 856.07 TRUE FALSE FALSE 823.3968033 972.2279498 734.7135502 975.881012 1059.33153 887.0912212 1274.118087 1289.599272 743.4568594 850.9780576 0.96758876 1.142482983 0.863375434 1.146775764 1.244840005 1.042437244 1.497239648 1.515431873 0.873649858 1 9.732978122 -4.002748367 0.546235292 0.985919718 2.12887153 0.726140046 0.11522387 1.60640886 0.265775346 0.019331182 1.239127683 9.94E-05 4.002748367 1.142951812 ELFQTPGTDKPT(ph)TDEK ddPTM_HeLa_CUDC101_4h_R1 1 ELFQTPGTDKPTTDEK 16 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(0.06)PGT(0.116)DKPT(0.64)T(0.183)DEK 70.47 0.0026376 0 1645.4 1487.9 1456.7 1326.1 1612.2 1186.8 1071.9 596.47 1482 1911.8 TRUE FALSE FALSE 1452.528706 1533.740435 1535.453608 1380.18409 1493.271218 1164.163767 1113.243542 664.3697338 1420.911333 1900.428529 0.764316408 0.807049785 0.807951252 0.72624888 0.785755 0.61257961 0.585785535 0.349589434 0.747679437 1 10.89210905 -4.002655082 0.213154659 0.981241621 5.92E-31 0.686327425 0.091608795 4.829281416 0.17425702 0.083521431 1.289815829 9.94E-05 4.002655082 -0.981241621 IVAHAVEVPAVQS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 IVAHAVEVPAVQSPR 15 0 H0YCL8;B5MBX0;Q96FF9 H0YCL8 CDCA5 Sororin 1 0 IVAHAVEVPAVQS(1)PR 94.387 0.0052991 49164000 3600.4 3424.8 3298.6 3968.2 3635.8 3078.5 2842.9 1540.1 3589 3321.1 TRUE FALSE FALSE 3178.36657 3530.314029 3476.932294 4130.040348 3367.594278 3019.782742 2952.551605 1715.418759 3441.059901 3301.345949 0.962748715 1.069355979 1.05318629 1.251017134 1.020067066 0.914712601 0.894347836 0.519611936 1.0423203 1 11.68883861 -3.999333495 1.370615921 1.014352058 0.024872509 0.777498078 0.08385224 0.939907955 0.97113094 0.013475653 1.52198528 0.000100154 3.999333495 -0.989479549 DDVGS(ph)PRPR ddPTM_HeLa_CUDC101_4h_R1 1 DDVGSPRPR 9 1 A0A1C7CYW6;A0A1B0GWB1;A0A1B0GTQ2;P0DI83 A0A1C7CYW6 RAB34 "Ras-related protein Rab-34, isoform NARR" 1 0 DDVGS(1)PRPR 70.728 0.036461 16549000 4172.2 2862.5 3719.2 4353.4 3756.7 3284.1 3145.3 1566.1 3484.1 4499.3 TRUE FALSE FALSE 3683.141041 2950.690232 3920.271202 4530.950469 3479.575725 3221.461264 3266.615275 1744.378494 3340.483923 4472.537963 0.823501348 0.659735089 0.876520498 1.013060259 0.777986851 0.72027589 0.730371727 0.390019829 0.746887774 1 12.12687801 -3.998351061 0.74444806 0.897513722 9.26E-31 0.546387641 0.114143983 1.945062771 0.58686687 0.019571156 1.591949954 0.00010038 3.998351061 -0.897513722 S(ph)PTDSDVSLDSEDSGAK ddPTM_HeLa_CUDC101_4h_R1 2 SPTDSDVSLDSEDSGAK 17 0 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(1)PTDSDVSLDSEDSGAK;S(0.979)PT(0.021)DSDVSLDSEDSGAK ; 334.46 1.69E-191 102984000 3902.5 3005.3 2947 2950.4 2971.4 2568.09 2247.26 1341.61 3066.2 2752.75 TRUE FALSE FALSE 3445.054866 3097.889731 3106.323734 3070.730065 2752.205742 2519.107962 2333.937571 1494.333459 2939.809938 2736.376521 1.258984222 1.13211384 1.13519602 1.122188428 1.005784738 0.920599904 0.85292998 0.546099357 1.074344088 1 11.41805104 -3.997003158 0.736994946 1.127857293 2.88E-09 0.874273437 0.066997912 1.306520488 0.385872812 0.016416599 1.331419979 0.000100692 3.997003158 -1.12785729 SVLISLK(ac)QAPLVH ddPTM_HeLa_CUDC101_4h_R1 2 SVLISLKQAPLVH 13 1 P09496-2;P09496-4;P09496-3;P09496;P09496-5;C9J8P9 P09496-2 CLTA Clathrin light chain A 0 1 ; SVLISLK(1)QAPLVH;SVLISLK(1)QAPLVH 160.18 6.30E-05 1245090 260.1 387.67 169.86 355.062 335.01 338.12 185.37 326.68 115.22 194.72 FALSE TRUE FALSE 229.6114723 399.6136532 179.0431454 369.5429631 310.2969797 331.6709243 192.519783 363.8679307 110.4705828 193.5617968 1.186243753 2.064527504 0.924992165 1.909173035 1.603089994 1.713514391 0.994616635 1.879854066 0.570725136 1 7.596650426 -7.485858023 14.91752462 1.082133753 1.559490289 0.364043282 0.386723799 3.645352018 1469.018559 0.055109784 0.061584619 3.27E-08 7.485858023 0.477356535 SVLNNLK(ac)GDK ddPTM_HeLa_CUDC101_4h_R1 2 SVLNNLKGDK 10 1 E9PER7;P29083 E9PER7 GTF2E1 General transcription factor IIE subunit 1 0 1 ; SVLNNLK(1)GDK;SVLNNLK(1)GDK 172.21 0.00064452 2952600 2392.29 1952.14 1621.49 1612.24 2339.6 2138.82 2087.03 1967.08 1856.73 2015.65 FALSE TRUE FALSE 2111.869393 2012.28312 1709.152654 1677.994116 2167.012369 2098.025572 2167.527446 2191.004436 1780.194804 2003.660824 1.054005432 1.004303271 0.853014958 0.837464153 1.081526545 1.047096169 1.081783613 1.093500661 0.888471133 1 10.9684226 RGS(ph)MEQAPAVALPPTHK ddPTM_HeLa_CUDC101_4h_R1 1 RGSMEQAPAVALPPTHK 17 1 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 RGS(1)MEQAPAVALPPTHK 93.729 0.0027791 8351900 5839.7 6030.4 5178.7 5170.2 6697.8 7017.8 6565.7 5394.5 5867.6 7492.8 TRUE FALSE FALSE 5155.179218 6216.189476 5458.676187 5381.063104 6203.716638 6883.947157 6818.941248 6008.588075 5625.735044 7448.232492 0.692134573 0.834585854 0.732882089 0.722461753 0.83291125 0.924239028 0.915511332 0.806713281 0.755311418 1 12.86268239 -3.9965493 17.52248672 0.840572599 0.767822038 0 0.096425232 51479438.64 1594757076 0.017521781 80311001.78 0.000100798 3.9965493 -0.072750561 SVMEELK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 SVMEELKR 8 1 F5H6N1;P61326;Q96A72;F5H3U9;F5H6P7 F5H6N1 MAGOHB;MAGOH Protein mago nashi homolog;Protein mago nashi homolog 2 0 1 SVMEELK(1)R 85.67 0.036435 1861700 996.6 417.11 516.04 488.32 1028.6 742.1 1013.2 766.56 853.19 567.75 FALSE TRUE FALSE 879.7800587 429.9606647 543.9386833 508.2358003 952.7222273 727.9456789 1052.279463 853.8220919 818.0211471 564.3729978 1.558862777 0.761837768 0.963792891 0.900531745 1.688107388 1.289830807 1.864510647 1.512868431 1.449433531 1 9.140505154 -5.745021968 24.99704307 1.180492649 1.587163876 0.419141728 0.270132832 246.9531607 376007.1383 0.045035258 0.089860174 1.80E-06 5.745021968 0.406671227 RSNATNSSYS(ph)PTTGR ddPTM_HeLa_CUDC101_4h_R1 1 RSNATNSSYSPTTGR 15 1 Q13009-2;Q13009 Q13009-2 TIAM1 T-lymphoma invasion and metastasis-inducing protein 1 1 0 RSNATNSS(0.004)Y(0.001)S(0.8)PT(0.097)T(0.097)GR 72.801 0.018177 793020 181.18 59.776 188.83 179.42 160.29 192.01 225.6 117.81 168.01 205.68 TRUE FALSE FALSE 159.9423551 61.61762771 199.038721 186.7375231 148.465726 188.3477292 234.3014676 131.2210142 161.0845567 204.4566062 0.782280201 0.301372643 0.973501051 0.913335727 0.726147855 0.921211267 1.145971617 0.641803738 0.787866725 1 7.675650868 -3.995901547 21.75739394 0.865306602 0.367359499 0.058464644 0.215483251 7738.906104 39384.34793 0.029559127 106505.669 0.000100948 3.995901547 -0.497947104 RGNDPLTSS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 1 RGNDPLTSSPGR 12 1 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RGNDPLT(0.106)S(0.032)S(0.862)PGR 124.48 0.0053479 11675000 1845 1533.4 1545.6 1858.9 1919.5 1840.8 1871.2 2156.4 2378.6 1947.2 TRUE FALSE FALSE 1628.731897 1580.642236 1629.159811 1934.713977 1777.902309 1805.689807 1943.372811 2401.87586 2280.553101 1935.617968 0.841453181 0.816608578 0.841674255 0.99953297 0.918519222 0.932875101 1.004006391 1.240883222 1.178204139 1 10.91857852 -3.992827738 1.386737145 0.913408833 1.580883237 0.416699076 0.102369996 1.179430576 1.23240661 0.011151509 1.30882885 0.000101665 3.992827738 0.667474404 SVNELIYK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 SVNELIYKR 9 1 P18124;A8MUD9 P18124 RPL7 60S ribosomal protein L7 0 1 ; SVNELIYK(1)R;SVNELIYK(1)R 87.806 0.011774 0 2826.1 2636.7 2653.4 2787.7 3737.2 3300.3 3442.5 3165 2844.9 2273.7 FALSE TRUE FALSE 2494.828842 2717.933602 2796.85083 2901.394455 3461.514202 3237.352276 3575.278378 3525.290807 2727.632018 2260.175931 1.10382064 1.202531876 1.237448285 1.283702926 1.531524229 1.432345257 1.581858442 1.55974177 1.206822876 1 11.14221936 -6.110043275 0.486481471 1.015923431 1.635353826 0.843441733 0.075792167 0.162768896 0.069191009 0.012889732 0.043903533 7.76E-07 6.110043275 0.619430395 AVAS(ph)PEATVSQTDENK ddPTM_HeLa_CUDC101_4h_R1 4 AVASPEATVSQTDENK 16 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 0 AVAS(0.879)PEAT(0.119)VS(0.001)QTDENK;AVAS(0.999)PEATVSQTDENK;AVAS(0.989)PEAT(0.011)VSQTDENK;AVAS(1)PEATVSQTDENK ;;; 256.98 9.61E-70 176860000 10418.1 9364.1 8543.4 8882.1 8780.5 8582.1 6867.3 4800.16 10075.5 11247 TRUE FALSE FALSE 9196.906111 9652.596822 9005.282046 9244.35043 8132.780008 8418.410741 7132.174061 5346.590811 9660.183625 11180.10234 0.822613768 0.86337285 0.805474026 0.826857407 0.727433413 0.752981545 0.637934595 0.478223781 0.864051449 1 13.44864577 -3.334039464 0.20098616 0.993947313 1.01E-25 0.828745353 0.055794331 5.646659855 0.147662188 0.062274688 1.490019499 0.000463405 3.334039464 -0.993947313 down S(ph)DFIPYR ddPTM_HeLa_CUDC101_4h_R1 1 SDFIPYR 7 0 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 0 S(1)DFIPYR 91.853 0.031316 3298800 1667 1631.5 1700.5 1638.8 2267.1 2062.8 2230.2 1363.9 2060.6 2294.6 TRUE FALSE FALSE 1471.596787 1681.764581 1792.434174 1705.637347 2099.86055 2023.455527 2316.219561 1519.160863 1975.661196 2280.951617 0.64516791 0.73730831 0.785827354 0.747774453 0.92060723 0.887110236 1.015461943 0.666020643 0.866156555 1 11.15542013 -3.99219798 17.13202829 0.83315192 0.438775796 0.178632875 0.112595461 8878124.861 243457155.1 0.020510461 78610180.97 0.000101813 3.99219798 -0.394376124 SVNFSLTPNEIK ddPTM_HeLa_CUDC101_4h_R1 1 SVNFSLTPNEIK 12 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 0 0 140.78 0.0029684 234310 145.76 0 0 0 164.35 125.59 108.5 0 131.97 151.32 FALSE FALSE TRUE 128.6742338 0 0 0 152.2262279 123.19458 112.6848813 0 126.5301407 150.4199419 0.855433343 0 0 0 1.012008288 0.819004305 0.749135254 0 0.841179295 1 7.232852035 -7.427285413 7.549105803 0.936719489 0.397104928 0.307081178 0.363896996 0.261949307 18.29531771 0.066597291 0.075863547 3.74E-08 7.427285413 -0.539614561 DLLSDLQDIS(ph)DSERK ddPTM_HeLa_CUDC101_4h_R1 3 DLLSDLQDISDSERK 15 1 P21127;P21127-8;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-9;P21127-2;P21127-3;P21127-6;P21127-10;P21127-5;Q9UQ88-9;E7ESP2;J3KS35;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 DLLSDLQDIS(0.703)DS(0.297)ERK;DLLSDLQDIS(0.831)DS(0.169)ERK;DLLSDLQDIS(0.997)DS(0.003)ERK ;; 125.98 6.94E-05 31765000 6279.22 6546.24 5908.09 6793.27 7168.02 5822.08 5554.41 3717.73 7052.71 6882.8 TRUE FALSE FALSE 5543.17935 6747.921895 6227.499216 7070.328914 6639.249445 5711.033524 5768.645454 4140.941356 6761.994309 6841.860799 0.810185929 0.986269977 0.910205483 1.033392687 0.970386513 0.834719339 0.843139845 0.60523613 0.988326788 1 12.74017304 -3.991299191 1.272377491 0.925277907 0.28122828 0.69501707 0.067751785 1.408990194 1.234825994 0.012336327 1.390476264 0.000102024 3.991299191 -0.644049627 AGVLT(ph)PPDLGPHPPPPAPR ddPTM_HeLa_CUDC101_4h_R1 1 AGVLTPPDLGPHPPPPAPR 19 0 I3L2J0 I3L2J0 CIC 1 0 AGVLT(1)PPDLGPHPPPPAPR 84.166 0.0072034 8655900 1601.9 1557.7 1703.3 1590.6 2357.8 1855.3 2231.1 1264.3 2457.2 2185.8 TRUE FALSE FALSE 1414.12771 1605.690891 1795.38555 1655.471543 2183.869791 1819.913244 2317.154274 1408.222802 2355.913176 2172.798764 0.650832343 0.738996596 0.826300889 0.76190744 1.005095284 0.837589414 1.066437588 0.648114692 1.084275826 1 11.08533885 -3.990528966 16.30196336 0.843684492 0.369060179 0.140719071 0.146003235 1565598.932 39636948.47 0.021228475 16158224.92 0.000102205 3.990528966 -0.474624313 (ac)MT(ph)PPQQPPPLR ddPTM_HeLa_CUDC101_4h_R1 1 MTPPQQPPPLR 11 0 A0A0A0MSF0;D6RA68;A0A0A0MSC7;Q9H9P5-2;Q9H9P5-1 A0A0A0MSF0 UNKL 1 0 MT(1)PPQQPPPLR 113.38 0.0080287 2488200 540.9 402.97 657.69 474.75 682.74 716.53 888.89 1291.5 780.89 666.59 TRUE FALSE FALSE 477.496522 415.3850281 693.2467108 494.112357 632.3756304 702.8633841 923.1747851 1438.51914 748.7013837 662.625093 0.720613401 0.626877902 1.046212584 0.745689172 0.954349054 1.060725577 1.393208309 2.170939729 1.129901948 1 9.372049028 -3.988915194 1.05064431 0.851485966 3.531700376 0.873562137 0.149193555 0.639789819 0.380364212 0.02134794 2.188208703 0.000102585 3.988915194 2.680214409 up S(ph)RS(ph)S(ph)SVGSSSSYPISPAVSR ddPTM_HeLa_CUDC101_4h_R1 1 SRSSSVGSSSSYPISPAVSR 20 1 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 3 0 S(0.746)RS(0.746)S(0.747)S(0.745)VGS(0.006)S(0.005)S(0.002)S(0.002)YPISPAVSR 70.986 0.012984 16270000 586.84 545.24 687.63 456.57 431.76 467.89 608.53 532.62 594.85 517.91 TRUE FALSE FALSE 518.0515048 562.0381981 724.8053578 475.1908981 399.909925 458.9657778 632.0012059 593.2513079 570.3300312 514.8294483 1.006258493 1.091697843 1.407855281 0.923006443 0.776781372 0.891490919 1.227593348 1.152325901 1.107803823 1 9.007950768 -3.984317161 0.00909651 5.00E-06 2.138221239 0 0.17425114 31890.02231 42.24485193 4623.123615 5327.45637 0.000103677 3.984317161 2.138216243 SVPHLQK ddPTM_HeLa_CUDC101_4h_R1 2 SVPHLQK 7 0 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 86.472 0.034628 33439000 19423.5 12463.1 14401.4 16078.8 15628.1 14984.2 15025.8 11300.5 12495.3 9913.1 FALSE FALSE TRUE 17146.70677 12847.07334 15179.98325 16734.56296 14475.2462 14698.40135 15605.35014 12586.90324 11980.23845 9854.13644 1.740051691 1.303723915 1.540468141 1.698227243 1.468951266 1.491597101 1.58363447 1.277321795 1.215757313 1 13.26651373 -9.462519614 1.146237787 0.994057458 1.535715876 0.508766078 0.153429414 0.240968834 0.556287387 0.105595342 0.024930636 3.45E-10 9.462519614 0.541658418 SVPHLQK(ac)VFDR ddPTM_HeLa_CUDC101_4h_R1 1 SVPHLQKVFDR 11 1 P07355;P07355-2;H0YN42;A6NMY6;H0YN28;H0YM50;H0YL33;H0YNP5 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 1 SVPHLQK(1)VFDR 92.112 0.019727 1465800 1247.6 759.81 408 711.37 835.28 770.54 669.19 729.26 463.55 379.11 FALSE TRUE FALSE 1101.358219 783.2188455 430.0577141 740.3827434 773.6630585 755.8432333 695.0008825 812.2760106 444.4422728 376.8550369 2.922498339 2.078302713 1.141175444 1.964635393 2.052946048 2.005660425 1.844212799 2.15540707 1.179345449 1 8.557865865 -9.650410117 1.503465236 1.00299569 2.129635416 0.422807242 0.419336448 0.324128268 1.323187836 0.359550859 0.082156145 2.24E-10 9.650410117 1.126639725 FNYSGS(ph)GGR ddPTM_HeLa_CUDC101_4h_R1 2 FNYSGSGGR 9 0 Q12906-7;Q12906 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 FNYS(0.001)GS(0.999)GGR;FNYS(0.001)GS(0.999)GGR ; 109.39 0.010527 39544000 7157 5528.1 6061.2 6324.8 5742.1 5854.5 5228.9 2758.74 6301 5628.7 TRUE FALSE FALSE 6318.067309 5698.414209 6388.886806 6582.752682 5318.516723 5742.835167 5430.580425 3072.78381 6041.270113 5595.220242 1.129190101 1.018443236 1.141847243 1.176495723 0.950546447 1.026382326 0.970574917 0.549180135 1.079719806 1 12.44997921 -3.981264011 1.52102898 1.06612033 1.07E-12 0.84657044 0.065745483 0.71316525 0.875495391 0.010538821 1.393985777 0.000104409 3.981264011 -1.06612033 YGS(ph)IVDDER ddPTM_HeLa_CUDC101_4h_R1 2 YGSIVDDER 9 0 Q13576 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 1 0 YGS(1)IVDDER;YGS(1)IVDDER ; 133.91 0.00268 8265300 5076.6 3946.4 4281.4 4467.9 4999.6 5450.5 5952.9 8505 4420.1 5081.7 TRUE FALSE FALSE 4481.528644 4067.983906 4512.865435 4650.120274 4630.789469 5346.540794 6182.505347 9473.174822 4237.901607 5051.473822 0.887172497 0.805306342 0.893375991 0.920547238 0.916720472 1.058412056 1.223901294 1.875328895 0.838943595 1 12.30248866 -3.980917418 1.242914572 0.92654376 2.882967962 0.961408972 0.059042419 0.388239576 0.318888675 0.009831642 1.14541982 0.000104492 3.980917418 1.956424202 GADNDGS(ph)GS(ph)ESGYTTPK ddPTM_HeLa_CUDC101_4h_R1 3 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 2 0 GADNDGS(0.998)GS(0.897)ES(0.103)GY(0.001)TTPK;GADNDGS(1)GS(0.996)ES(0.004)GYTTPK;GADNDGS(0.993)GS(0.958)ES(0.048)GY(0.001)TTPK ;; 135.79 0.002194 105384000 13060.3 10973.3 10396.2 10396.6 12793.6 13304.6 13252.2 15504.4 11211.7 11671.2 TRUE FALSE FALSE 11529.39143 11311.37437 10958.25002 10820.61829 11849.84162 13050.83692 13763.34179 17269.35823 10749.54898 11601.77918 0.993760634 0.974968941 0.944531855 0.93266887 1.021381413 1.124899614 1.186313028 1.488509474 0.926543146 1 13.50205845 -3.980802348 0.96133508 0.98684055 1.999453264 0.949699886 0.036705385 0.448093627 0.22061912 0.005326745 0.533526798 0.00010452 3.980802348 1.012612714 AADIS(ph)LDNLVEGK ddPTM_HeLa_CUDC101_4h_R1 4 AADISLDNLVEGK 13 0 Q12888;Q12888-3;Q12888-2;A6NNK5;H7BZY0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 AADIS(1)LDNLVEGK;AADIS(1)LDNLVEGK;AADIS(1)LDNLVEGK;AADIS(1)LDNLVEGK ;;; 165.33 2.23E-05 66564100 15950.1 12276.7 11312.2 12089.8 13774.5 12540 10727.2 6386.6 14516.3 14982.2 TRUE FALSE FALSE 14080.45346 12654.93058 11923.77175 12582.8743 12758.38258 12300.82039 11140.9517 7113.624728 13917.93197 14893.08521 0.945435634 0.849718537 0.800624691 0.8448803 0.856664848 0.825941719 0.74806204 0.477646144 0.934523087 1 13.86235503 -3.329062431 0.29277484 0.991145795 2.05E-21 0.766683072 0.065910163 4.444753415 0.183566705 0.029336475 1.747073831 0.000468746 3.329062431 -0.991145795 down ASGGAQS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 1 ASGGAQSPLR 10 0 H7BZV9;C9JU48;D3YTC9;Q6NXT1 H7BZV9 ANKRD54 Ankyrin repeat domain-containing protein 54 1 0 ASGGAQS(1)PLR 101.56 0.014566 45513000 5756.4 2775.4 2349.1 4295.5 3139.4 3183.8 2965.2 1510.9 2195.3 2139.4 TRUE FALSE FALSE 5081.643518 2860.906784 2476.099452 4470.689057 2907.812717 3123.07432 3079.568757 1682.894749 2104.808805 2126.674754 2.389478461 1.345248858 1.16430566 2.102196892 1.367304855 1.46852466 1.448067577 0.79132681 0.989718245 1 11.05438369 -3.980631794 1.209592945 1.62268837 8.47E-12 0.118387974 0.444105558 3.892800024 3.027567754 0.080841609 9.279856296 0.000104561 3.980631794 -1.62268837 NLATSADT(ph)PPSTVPGTGK ddPTM_HeLa_CUDC101_4h_R1 1 NLATSADTPPSTVPGTGK 18 0 J3KRA9;Q96Q15-4;Q96Q15-3;Q96Q15-2;Q96Q15 J3KRA9 SMG1 Serine/threonine-protein kinase SMG1 1 0 NLAT(0.002)S(0.076)ADT(0.828)PPS(0.036)T(0.036)VPGT(0.022)GK 151.58 0.00028134 14254000 3794.5 2639.5 2738.6 3170.5 3222.7 2868.3 2720.2 1825.5 2148.7 2589.5 TRUE FALSE FALSE 3349.714462 2720.819866 2886.657 3299.806694 2984.967842 2813.591956 2825.119025 2033.307541 2060.129677 2574.097539 1.301316058 1.056999521 1.121424871 1.281927605 1.159617224 1.093040149 1.09751825 0.789910837 0.800330852 1 11.32985101 -3.978720674 1.653275139 1.147243082 0.398147752 0.265949287 0.139898438 1.631689023 2.346722238 0.017006743 2.435130004 0.000105022 3.978720674 -0.74909533 SATDGNTSTT(ph)PPT(ph)SAKK ddPTM_HeLa_CUDC101_4h_R1 1 SATDGNTSTTPPTSAKK 17 1 A0A669KAX4;Q13620-1;Q13620;A0A669KAU9;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 2 0 SATDGNT(0.002)S(0.084)T(0.423)T(0.495)PPT(0.537)S(0.459)AKK 59.857 0.028499 3906700 2719.5 2278.5 2436 2085.9 2765.8 2556.8 1781.8 1210.3 2155.1 2856.8 TRUE FALSE FALSE 2400.724332 2348.697884 2567.697528 2170.972018 2561.772444 2508.0333 1850.524623 1348.07566 2066.265866 2839.807627 0.845382733 0.82706232 0.904180095 0.76447855 0.902093656 0.88317014 0.651637317 0.474706683 0.72760769 1 11.47157749 -3.978690211 0.891891138 0.90899084 5.69E-18 0.629353988 0.087226722 1.237442263 0.523464662 0.012783725 1.231044032 0.000105029 3.978690211 -0.90899084 SHS(ph)VPENMVEPPLSGR ddPTM_HeLa_CUDC101_4h_R1 1 SHSVPENMVEPPLSGR 16 0 A1L390-3;A1L390;G3V311;A1L390-2 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 S(0.035)HS(0.962)VPENMVEPPLS(0.003)GR 125.61 0.00051487 12798000 910.96 583.88 574.68 631.41 484.91 997.66 841.51 1263.2 708.62 595.42 TRUE FALSE FALSE 804.1786497 601.8686507 605.7489391 657.161629 449.1391554 978.6312977 873.9673226 1406.997582 679.4103837 591.8784154 1.358688928 1.016878864 1.023434752 1.110298352 0.758836855 1.653432989 1.476599416 2.377173327 1.147888428 1 9.209157035 -3.978197967 1.102271555 1.12945374 3.645234527 0.781577569 0.204672839 1.065994565 0.686494958 0.032855164 3.60543389 0.000105148 3.978197967 2.515780787 up MKSSSSVTTSET(ph)QPCTPSSSDYSDLQR ddPTM_HeLa_CUDC101_4h_R1 1 MKSSSSVTTSETQPCTPSSSDYSDLQR 27 1 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 1 0 MKS(0.057)S(0.057)S(0.057)S(0.057)VT(0.049)T(0.155)S(0.155)ET(0.41)QPCT(0.002)PSSSDYSDLQR 53.361 0.017965 88253000 1341.5 1188.2 1416.5 1145.1 1816.5 1814.8 1931 2234 1394.3 1249.9 TRUE FALSE FALSE 1184.251404 1224.807034 1493.080275 1191.802128 1682.500414 1780.185714 2005.479317 2488.30953 1336.826364 1242.465539 0.953146277 0.985787529 1.201707595 0.959223487 1.354162639 1.43278478 1.614112628 2.002719151 1.075946432 1 10.27899012 -3.977121857 0.526063975 0.972055229 3.011475088 0.925281832 0.089847331 0.755896485 0.114312487 0.015540557 1.009185817 0.000105409 3.977121857 2.039419858 up AQSTDS(ph)LGTSGSLQSK ddPTM_HeLa_CUDC101_4h_R1 1 AQSTDSLGTSGSLQSK 16 0 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 1 0 AQSTDS(0.564)LGT(0.396)S(0.039)GSLQSK 237.81 1.92E-43 20134000 1666.5 1463.8 1159.8 1486.2 1648.1 1610.7 1630.2 2091.2 1239.7 1594.3 TRUE FALSE FALSE 1471.155396 1508.897943 1222.502296 1546.81366 1526.522946 1579.978581 1693.07736 2329.253755 1188.599041 1584.817033 0.928280909 0.952095991 0.77138387 0.976020341 0.963217151 0.996946997 1.068310931 1.46973039 0.749991334 1 10.63010058 -3.976446622 1.458651172 0.950276474 2.038701952 0.778734064 0.087739904 0.64538178 0.722067403 0.009413797 1.24121085 0.000105573 3.976446622 1.088425478 ELPDS(ph)SSPVPANNIR ddPTM_HeLa_CUDC101_4h_R1 1 ELPDSSSPVPANNIR 15 0 A0A0C4DH56;Q9BWT3-2;Q9BWT3 A0A0C4DH56 PAPOLG Poly(A) polymerase gamma 1 0 ELPDS(0.484)S(0.258)S(0.258)PVPANNIR 83.856 0.016464 13725000 2176.1 2038.4 1905.5 2004.8 2262.8 1717.9 1683.8 1024.1 2095.7 1748.7 TRUE FALSE FALSE 1921.020857 2101.200688 2008.517094 2086.564409 2095.877752 1685.13392 1748.74473 1140.679404 2009.314359 1738.298655 1.10511554 1.208768518 1.15544995 1.200348631 1.205706365 0.96941565 1.006009367 0.656204503 1.155908597 1 10.76346026 -3.976393756 1.437914901 1.088949154 0.189451963 0.735128276 0.083110326 1.178754368 1.281938311 0.014149473 1.847649696 0.000105586 3.976393756 -0.899497191 RKDSEEEAAS(ph)PEGK ddPTM_HeLa_CUDC101_4h_R1 1 RKDSEEEAASPEGK 14 2 A0A3B3ITU7;Q9HB96 A0A3B3ITU7 FANCE Fanconi anemia group E protein 1 0 RKDSEEEAAS(1)PEGK 116.04 0.0017616 19365000 5973.4 3793.1 6211.3 6077.1 4848.9 4480.4 4342.2 2312.9 5182.9 5947.9 TRUE FALSE FALSE 5273.207107 3909.960915 6547.101666 6324.950405 4491.206307 4394.943835 4509.680109 2576.191187 4969.258668 5912.521626 0.89187109 0.661301753 1.107328155 1.069755141 0.759609282 0.743328162 0.762733804 0.435717846 0.840463508 1 12.52955784 -3.973643087 0.716326252 0.942033078 2.91E-14 0.5239032 0.132375705 2.214097993 0.604130279 0.021899523 1.848123836 0.000106257 3.973643087 -0.942033078 MPPLPKPS(ph)S(ph)S(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 MPPLPKPSSSR 11 1 H3BU38 H3BU38 C16orf59 3 0 MPPLPKPS(1)S(1)S(1)R 77.662 0.021132 6523300 831.99 874.06 894.38 961.61 637.65 719.29 723.58 741.49 793.2 812.29 TRUE FALSE FALSE 734.4653934 900.9887526 942.7328882 1000.828612 590.6118299 705.5707417 751.488723 825.8982244 760.5039603 807.458463 0.909601456 1.115832942 1.167531126 1.239479996 0.731445464 0.873816765 0.930684063 1.022836793 0.941849018 1 9.657244237 -3.973630785 11.8818041 0.977914889 1.115004235 0 0.142710054 327014.0657 4702354.703 0.020314746 799001.744 0.00010626 3.973630785 0.137089345 SMS(ph)DVSAEDVQNLR ddPTM_HeLa_CUDC101_4h_R1 3 SMSDVSAEDVQNLR 14 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;E9PJ10;E9PK58;E9PLU6 E9PMS6 LMO7 LIM domain only protein 7 1 0 S(0.004)MS(0.996)DVSAEDVQNLR;S(0.004)MS(0.996)DVSAEDVQNLR;S(0.13)MS(0.869)DVSAEDVQNLR ;; 196.37 2.01E-16 61175000 13833.9 11434.9 11413.4 10711.3 11489 10695.6 8715.5 5207.52 11508.1 11123.1 TRUE FALSE FALSE 12212.31121 11787.19572 12030.44293 11148.15311 10641.47936 10491.59925 9051.659754 5800.323027 11033.73125 11056.93931 1.104492923 1.066045077 1.088044584 1.008249462 0.962425411 0.948870113 0.81864063 0.524586675 0.997901041 1 13.43266447 -3.972618023 0.871387084 1.051700219 2.56E-20 0.94483876 0.038083426 0.619219711 0.24832083 0.007226908 0.698625814 0.000106508 3.972618023 -1.051700219 AGSLQLS(ph)SMSAGNSSLR ddPTM_HeLa_CUDC101_4h_R1 1 AGSLQLSSMSAGNSSLR 17 0 A0A0B4J1Z0;A0A0X1KG75;A0A590PXD8;A0A0D9SG04;Q53SF7;Q53SF7-3;Q53SF7-2 A0A0B4J1Z0 COBLL1 Cordon-bleu protein-like 1 1 0 AGS(0.029)LQLS(0.651)S(0.221)MS(0.076)AGNS(0.002)S(0.021)LR 79.471 0.013365 8644600 847.18 943.05 926.23 838.3 1266.8 1042.9 1071.9 1224.9 794.04 863.51 TRUE FALSE FALSE 747.8748446 972.1042527 976.3047955 872.4894974 1173.350688 1023.00842 1113.243542 1364.337665 761.3093351 858.3738041 0.871269418 1.132495246 1.137388852 1.016444693 1.366946058 1.191798276 1.296921617 1.589444666 0.886920513 1 9.745462238 -3.972299968 0.365406596 0.934349416 2.100369367 0.767443161 0.102435574 2.620302119 0.207097859 0.033788002 1.399418139 0.000106586 3.972299968 1.166019951 GPASTPT(ph)YSPAPTQPAPR ddPTM_HeLa_CUDC101_4h_R1 1 GPASTPTYSPAPTQPAPR 18 0 Q6P1N0;Q6P1N0-2;K7EJY5 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 GPAS(0.128)T(0.334)PT(0.362)YS(0.176)PAPTQPAPR 305.54 3.16E-124 22751000 5171.9 4155 4389.5 4144.4 4547.7 4379.7 3339.4 2501.2 4572.4 4518.6 TRUE FALSE FALSE 4565.657722 4283.010625 4626.809648 4313.426546 4212.225231 4296.16452 3468.201777 2785.926498 4383.923737 4491.723166 1.016460176 0.953533971 1.030074534 0.960305519 0.937774897 0.956462444 0.772131685 0.620235574 0.976000429 1 12.1330533 -3.971299422 0.825293409 1.003686359 0.196646565 0.938532181 0.030061855 0.487496929 0.175326221 0.00427785 0.400524912 0.000106832 3.971299422 -0.807039794 SSSISEEKGDS(ph)DDEKPR ddPTM_HeLa_CUDC101_4h_R1 2 SSSISEEKGDSDDEKPR 17 2 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SSS(0.002)IS(0.137)EEKGDS(0.86)DDEKPR;SSS(0.002)IS(0.009)EEKGDS(0.989)DDEKPR ; 82.859 0.0088593 96634000 4819.6 4646 5267.2 4437 4909.6 5318.4 5412.4 5300.2 5184.8 6100.4 TRUE FALSE FALSE 4254.653794 4789.137753 5551.960764 4617.960038 4547.428589 5216.960381 5621.158081 5903.553344 4971.080349 6064.114549 0.701611713 0.789750542 0.915543517 0.76152256 0.749891604 0.860300434 0.926954469 0.973522729 0.819753702 1 12.56608129 -3.969284649 20.59716339 0.848683606 1.509313151 0.168336255 0.087707053 3845.778205 180580.6432 0.016548673 104567.3856 0.000107329 3.969284649 0.660629545 VSASS(ph)PSLAVASQSDSK ddPTM_HeLa_CUDC101_4h_R1 2 VSASSPSLAVASQSDSK 17 0 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;D6RDA9;Q3MSN4;P04150-9;P04150-8 A0A494C0P1 NR3C1 Glucocorticoid receptor 1 0 VSAS(0.02)S(0.96)PS(0.02)LAVASQSDSK;VSAS(0.055)S(0.943)PS(0.002)LAVASQSDSK ; 271.45 6.34E-86 69202000 9302.8 7274 7174.9 7226.5 8688.8 7375.5 6591.6 3639.94 8115.2 7968.8 TRUE FALSE FALSE 8212.339886 7498.103318 7562.796797 7521.227906 8047.844535 7234.824626 6845.84022 4054.296056 7780.688021 7921.401223 1.036728182 0.946562749 0.954729673 0.949482004 1.01596224 0.91332637 0.864220865 0.511815516 0.982236324 1 12.95153994 -3.968889869 1.184740293 1.002476536 2.32E-17 0.936450666 0.03614628 0.485333534 0.355286242 0.005920863 0.70547661 0.000107426 3.968889869 -1.002476536 APDSGLPSGGGGRPGCAYPGS(ph)PGPGAR ddPTM_HeLa_CUDC101_4h_R1 1 APDSGLPSGGGGRPGCAYPGSPGPGAR 27 1 Q6PJ61 Q6PJ61 FBXO46 F-box only protein 46 1 0 APDSGLPS(0.005)GGGGRPGCAY(0.116)PGS(0.879)PGPGAR 46.22 0.025486 14283000 732.23 668.54 629.8 554.39 702.86 386.06 633.15 486.46 605.72 500.47 TRUE FALSE FALSE 646.3991094 689.136925 663.848893 577.0004205 651.0114181 378.6965487 657.5708076 541.8366401 580.7519652 497.4931822 1.299312498 1.385218832 1.334387921 1.159815734 1.308583598 0.761209525 1.321768481 1.0891338 1.167356631 1 8.958532944 -3.966815558 16.60065278 1.170333865 0.800450952 0.015207487 0.181186657 19371605.17 263478142.7 0.026571324 207950742.3 0.000107941 3.966815558 -0.369882913 TRDDGDEEGLLTHS(ph)EEELEHSQDTDADDGALQ ddPTM_HeLa_CUDC101_4h_R1 3 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9-2;Q9UKM9 Q9UKM9-2 RALY RNA-binding protein Raly 1 0 TRDDGDEEGLLT(0.006)HS(0.748)EEELEHS(0.123)QDT(0.123)DADDGALQ;TRDDGDEEGLLT(0.064)HS(0.437)EEELEHS(0.262)QDT(0.237)DADDGALQ;TRDDGDEEGLLT(0.003)HS(0.332)EEELEHS(0.332)QDT(0.332)DADDGALQ ;; 73.603 4.15E-06 477907000 3148.26 3104.37 2836.31 2718.49 3495.71 2602.09 2672.84 1383.8 3555.32 2950.83 TRUE FALSE FALSE 2779.225735 3200.01196 2989.649498 2829.361773 3237.838438 2552.459469 2775.932334 1541.326198 3408.768205 2933.278332 0.947481085 1.090933624 1.019217803 0.964573236 1.103829256 0.870172953 0.946358313 0.525461966 1.16210186 1 11.51829826 -3.965016464 1.648488338 0.990454365 1.49E-15 0.748830896 0.084003178 0.691386936 0.957239505 0.008850715 1.376962332 0.000108389 3.965016464 -0.990454365 EGTGSTATSSSS(ph)TAGAAGK ddPTM_HeLa_CUDC101_4h_R1 2 EGTGSTATSSSSTAGAAGK 19 0 E5RGU4;A0A087WZK9;B3KS98;O15372;E5RHC7;E5RH59;E5RFW7;E5RFH0 E5RGU4 EIF3H Eukaryotic translation initiation factor 3 subunit H 1 0 EGTGSTATSSS(0.058)S(0.939)T(0.002)AGAAGK;EGTGSTATSSS(0.036)S(0.927)T(0.036)AGAAGK ; 381.89 0 14378400 6877 5429.7 5678.5 5826 6710.1 6336.8 6768.1 7335.7 5064.8 5897.4 TRUE FALSE FALSE 6070.888485 5596.982621 5985.496887 6063.609462 6215.109291 6215.936098 7029.147884 8170.766436 4856.0268 5862.322003 1.035577452 0.954738177 1.021011279 1.03433579 1.060178763 1.060319801 1.199038177 1.393776465 0.828345287 1 12.5172565 -3.963818447 0.949120316 1.013350272 1.813771723 0.80240127 0.063153497 0.433132177 0.203349952 0.003858529 0.40583694 0.000108688 3.963818447 0.800421451 GLNVIGASDQS(ph)PLQS(ph)PSNLR ddPTM_HeLa_CUDC101_4h_R1 3 GLNVIGASDQSPLQSPSNLR 20 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;Q9HAU0-5;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 2 0 GLNVIGAS(0.106)DQS(0.959)PLQS(0.892)PS(0.044)NLR;GLNVIGAS(0.037)DQS(0.955)PLQS(0.998)PS(0.01)NLR;GLNVIGAS(0.016)DQS(0.656)PLQS(0.985)PS(0.342)NLR ;; 127.37 0.00018897 35210700 4786.4 4829.38 3959.8 4479.5 5589.8 4809.6 5717.5 6342.8 4662.9 4842.92 TRUE FALSE FALSE 4225.345448 4978.167474 4173.878766 4662.193372 5177.45159 4717.864893 5938.02589 7064.838714 4470.693288 4814.114096 0.877699482 1.034077584 0.867008692 0.968442641 1.075473387 0.980006871 1.233461811 1.467526231 0.928663758 1 12.23305462 -3.96325439 0.895291167 0.945516762 2.050769873 0.875056902 0.061261833 0.847408405 0.354421405 0.010222814 1.035818883 0.000108829 3.96325439 1.105253111 EEAENTLQS(ph)FRQDVDNASLAR ddPTM_HeLa_CUDC101_4h_R1 2 EEAENTLQSFRQDVDNASLAR 21 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 EEAENT(0.002)LQS(0.995)FRQDVDNAS(0.003)LAR;EEAENT(0.097)LQS(0.824)FRQDVDNAS(0.079)LAR ; 79.383 0.0010324 16840900 1571.15 1255.68 1115.99 1353.93 1484.79 1413.37 1540.55 1670.02 1447.93 1254.96 TRUE FALSE FALSE 1386.982179 1294.366012 1176.323795 1409.149118 1375.26 1386.412322 1599.96953 1860.128326 1388.245713 1247.495442 1.111813424 1.037571737 0.942948371 1.129582578 1.102416853 1.111356623 1.282545391 1.491090279 1.11282628 1 10.28481883 -3.960472226 0.882806438 1.048109134 1.98245186 0.865337972 0.053903989 0.900097545 0.364970295 0.009072939 0.918510606 0.000109529 3.960472226 0.934342726 HSSDINHLVTQGRES(ph)PEGSYTDDANQEVR ddPTM_HeLa_CUDC101_4h_R1 1 HSSDINHLVTQGRESPEGSYTDDANQEVR 29 1 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 0 HS(0.002)S(0.002)DINHLVT(0.046)QGRES(0.937)PEGS(0.008)Y(0.004)T(0.002)DDANQEVR 48.532 0.01368 5944500 1437.5 1168.9 1248.9 1056.9 1701.8 1198.4 1232.3 835.46 1224.1 1355.4 TRUE FALSE FALSE 1268.998429 1204.912424 1316.419312 1100.00495 1576.261604 1175.542517 1279.830224 930.5653894 1173.64208 1347.338021 0.941856023 0.894291117 0.977052003 0.816428345 1.169908056 0.872492648 0.949895427 0.690669583 0.871082135 1 10.39589612 -3.958949925 1.794031542 0.964649428 0.363288633 0.376131902 0.094149748 1.546873773 2.475597302 0.011557505 2.046028862 0.000109913 3.958949925 -0.601360795 ELDPSLVSANDSPS(ph)GMQTR ddPTM_HeLa_CUDC101_4h_R1 1 ELDPSLVSANDSPSGMQTR 19 0 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 ELDPSLVS(0.046)ANDS(0.228)PS(0.713)GMQT(0.012)R 124.45 0.00010017 4107900 1245.6 986.15 823.44 728.72 954.04 767.22 748.89 394.21 709.8 1025.4 TRUE FALSE FALSE 1099.592656 1016.532113 867.9576572 758.4403514 883.6623699 752.5865568 777.7749382 439.0852729 680.5417436 1019.300875 1.078771424 0.997283665 0.851522527 0.744078976 0.866929865 0.738336025 0.763047454 0.430771015 0.66765541 1 9.993364251 -3.958636936 0.3563533 1.047974744 1.01E-13 0.370969586 0.142759135 2.427887411 0.182768978 0.028088386 1.13922501 0.000109992 3.958636936 -1.047974744 S(ph)LSGSS(ph)PCPK ddPTM_HeLa_CUDC101_4h_R1 2 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.999)LS(0.001)GS(0.006)S(0.994)PCPK;S(0.999)LS(0.001)GS(0.078)S(0.922)PCPK ; 146.5 0.0069491 253770000 21488 19313.2 18569.6 17162.1 20329.2 17235.1 15624.2 11300.6 20570.6 18063.4 TRUE FALSE FALSE 18969.20921 19908.2168 19573.52875 17862.04462 18829.55542 16906.36918 16226.83063 12587.01463 19722.67116 17955.95809 1.0564298 1.108724842 1.090085455 0.994769788 1.048652226 0.941546483 0.903701743 0.700993763 1.098391468 1 14.13217501 -3.957963344 0.950565571 1.038208189 0.338885719 0.873320827 0.041654742 0.857932551 0.400910894 0.006568632 0.705316463 0.000110163 3.957963344 -0.69932247 SS(ph)RGQEEISGALPVAS(ph)PASSR ddPTM_HeLa_CUDC101_4h_R1 1 SSRGQEEISGALPVASPASSR 21 1 Q9UBK8;Q9UBK8-1;H0Y9D5;H0Y8S9 Q9UBK8 MTRR Methionine synthase reductase 2 0 S(0.457)S(0.543)RGQEEIS(0.001)GALPVAS(0.392)PAS(0.33)S(0.278)R 81.001 0.0015305 9169700 1005.6 1334.7 1201.7 1265.2 1474.5 1049 1052.7 571.47 1341.4 1386.6 TRUE FALSE FALSE 887.7250924 1375.820525 1266.667537 1316.800325 1365.729073 1028.992073 1093.302992 636.5238348 1286.106924 1378.352442 0.64404797 0.998163085 0.918972172 0.955343702 0.990841697 0.746537708 0.793195527 0.461800491 0.933075522 1 10.42872911 -3.957697776 1.447850741 0.863804403 1.57E-08 0.561278185 0.113523754 2.063026718 2.189125064 0.021874369 3.170851436 0.000110231 3.957697776 -0.863804388 EISS(ph)S(ph)PTSK ddPTM_HeLa_CUDC101_4h_R1 1 EISSSPTSK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 EIS(0.365)S(0.637)S(0.998)PTSK 126.39 0.040033 132010000 11343 8082.6 9642.7 10326 9142.9 8878.2 7889.5 4846 11625 11496 TRUE FALSE FALSE 10013.39073 8331.615326 10164.01353 10747.13891 8468.446482 8708.863127 8193.800658 5397.649052 11145.81258 11427.62128 0.876244538 0.729076955 0.889425129 0.940452842 0.741050677 0.762088882 0.717017169 0.472333561 0.975339688 1 13.48023751 -3.309613094 0.266268346 0.971773214 1.06E-29 0.727231569 0.078759883 6.167613952 0.223837855 0.044514755 2.147313127 0.000490215 3.309613094 -0.971773214 down LSASTASELS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 LSASTASELSPK 12 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 LSASTAS(0.032)ELS(0.968)PK;LSASTAS(0.009)ELS(0.991)PK;LSAS(0.014)TAS(0.195)ELS(0.79)PK;LSASTAS(0.007)ELS(0.993)PK ;;; 228.62 6.66E-33 1391720000 17104.7 16193.4 16801.7 16184.9 15001 13974.6 14682.3 13830.9 13462.4 14762.1 TRUE FALSE FALSE 15099.713 16692.29946 17710.05072 16844.99018 13894.40612 13708.05779 15248.60123 15405.35375 12907.47417 14674.29437 1.028990738 1.137519736 1.206875798 1.147925055 0.946853441 0.934154477 1.039136932 1.049819048 0.879597604 1 13.84100351 -3.956129507 13.48888879 1.035830598 1.10445394 0.001867036 0.098065066 3949359.368 40156378.46 0.012816991 6480331.487 0.000110629 3.956129507 0.068623342 LS(ph)PISHGNTIALFFR ddPTM_HeLa_CUDC101_4h_R1 2 LSPISHGNTIALFFR 15 0 Q9BQ70 Q9BQ70 TCF25 Transcription factor 25 1 0 LS(1)PISHGNTIALFFR;LS(1)PISHGNTIALFFR ; 144.41 0.00021883 13558200 7332.5 5402.5 4376.6 5489.9 5482.6 5736.3 4073.8 3673.5 4022.6 5091.6 TRUE FALSE FALSE 6472.995465 5568.944621 4613.212234 5713.801851 5078.159521 5626.889635 4230.927831 4091.676391 3856.786725 5061.314937 1.278915765 1.100296008 0.911465161 1.128916482 1.003328104 1.111744617 0.835934512 0.808421614 0.762012792 1 12.30529653 -3.955689307 0.635725704 1.119560223 0.423275354 0.061264222 0.151567334 3.274333679 0.697111118 0.02250197 1.807657475 0.000110742 3.955689307 -0.696284869 (ac)PEPSK(ac)SAPAPK ddPTM_HeLa_CUDC101_4h_R1 1 PEPSKSAPAPK 11 1 U3KQK0;Q99877 U3KQK0 HIST1H2BN Histone H2B;Histone H2B type 1-N 0 1 PEPSK(1)SAPAPK 46.39 0.020733 5556200 2425.4 5258.6 3536 4430.9 6442.6 8083.7 10129 9354.4 837.4 507.44 FALSE TRUE FALSE 2141.098289 5420.611233 3727.166856 4611.611254 5967.342233 7929.516891 10519.67892 10419.26708 802.8820176 504.4217243 4.244659152 10.74618909 7.388989562 9.142372407 11.83006589 15.72001464 20.85492836 20.65586509 1.591688024 1 8.9784866 -3.288495225 0.228732712 5.54E-13 54.45599861 0.938535802 1.680321797 2.702590762 0.080821447 1.322153677 44.85764186 0.000514641 3.288495225 54.45599861 up ARPSQFPEQSSSAQQNGSVSDIS(ph)PVQAAK ddPTM_HeLa_CUDC101_4h_R1 1 ARPSQFPEQSSSAQQNGSVSDISPVQAAK 29 1 O00139-1;O00139-5;O00139;O00139-4 O00139-1 KIF2A Kinesin-like protein KIF2A 1 0 ARPSQFPEQSSSAQQNGS(0.118)VS(0.104)DIS(0.778)PVQAAK 81.388 7.16E-07 9578600 1007.3 782.06 787.49 767.28 1103.5 890.19 979.45 789.32 903.76 981.12 TRUE FALSE FALSE 889.225821 806.1543416 830.0640914 798.5729949 1022.097003 873.2111089 1017.227715 879.1729983 866.5066303 975.2842546 0.911760665 0.826583981 0.851099654 0.818810507 1.047999082 0.895340107 1.043006395 0.901453083 0.888465723 1 9.929678955 -3.955155579 17.73173831 0.939427484 0.664508493 0 0.08159386 5177.380118 53952.25627 0.011403243 51407.13924 0.000110878 3.955155579 -0.274918991 AGGPS(ph)DDDNADKPK ddPTM_HeLa_CUDC101_4h_R1 4 AGGPSDDDNADKPK 14 1 E7EVA0 E7EVA0 MAP4 Microtubule-associated protein 1 0 AGGPS(1)DDDNADKPK;AGGPS(1)DDDNADKPK;AGGPS(1)DDDNADKPK;AGGPS(1)DDDNADKPK ;;; 138.05 0.00032936 860639000 22846.9 15517 23553.5 23632.4 20179.4 17303.9 17415.4 9089.5 22455.6 24591.5 TRUE FALSE FALSE 20168.82102 15995.06038 24826.87346 24596.23142 18690.80587 16973.85694 18087.11781 10124.21194 21529.97066 24445.22866 0.825061663 0.654322387 1.015612241 1.006177187 0.764599347 0.69436278 0.739903809 0.41415902 0.880743271 1 14.57726528 -3.954724431 0.665841886 0.908510757 8.41E-22 0.592622819 0.114578418 2.393516817 0.556548744 0.021591271 1.804934902 0.000110988 3.954724431 -0.908510757 SSS(ph)FGSVSTSSNSSK ddPTM_HeLa_CUDC101_4h_R1 4 SSSFGSVSTSSNSSK 15 0 E5RG30;E5RJ65;E5RHF1;E5RGS8;E5RH07;E5RGQ6;A0A0C4DGW2;P57768-2;P57768 E5RG30 SNX16 Sorting nexin-16 1 0 S(0.06)S(0.06)S(0.879)FGS(0.001)VSTSSNSSK;SS(0.002)S(0.998)FGSVSTSSNSSK;S(0.001)S(0.001)S(0.997)FGS(0.001)VSTSSNSSK;SS(0.003)S(0.997)FGSVSTSSNSSK ;;; 287.42 1.91E-103 81105800 16753.9 13765.2 14232.1 14526.1 17493 15296.5 14924.2 14296.4 15020.9 13997.1 TRUE FALSE FALSE 14790.03324 14189.2895 15001.53038 15118.53715 16202.57624 15004.74475 15499.83139 15923.84439 14401.73214 13913.84463 1.06297243 1.01979646 1.078172912 1.086582289 1.164493113 1.078403932 1.113986235 1.144460414 1.035064896 1 13.7642335 -3.954202857 0.093092919 0.916785481 1.357290701 0.645765962 0.029643248 26.51945493 0.364776291 0.408848145 1.665480796 0.000111121 3.954202857 0.44050522 (ac)ADGGS(ph)PFLGRR ddPTM_HeLa_CUDC101_4h_R1 3 ADGGSPFLGRR 11 1 O60504-2;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 ADGGS(1)PFLGRR;ADGGS(1)PFLGRR;ADGGS(1)PFLGRR ;; 103.44 0.0012733 132859000 1423.29 1421.97 1458.02 1585.1 1181.2 1347.34 1167.38 1243.01 1216.8 1341.147 TRUE FALSE FALSE 1256.454104 1465.77921 1536.844971 1649.747229 1094.065229 1321.641734 1212.406238 1384.509234 1166.642989 1333.169798 0.942456171 1.099469259 1.152775118 1.237462199 0.820649576 0.991352892 0.909416219 1.0385093 0.875089573 1 10.38064482 -3.953663249 14.11225536 0.997535713 1.223123024 0.005570675 0.12213898 3190708.616 30287708.15 0.016327515 18545577.61 0.000111259 3.953663249 0.225587311 SSGTASSVAFT(ph)PLQGLEIVNPQAAEKK ddPTM_HeLa_CUDC101_4h_R1 2 SSGTASSVAFTPLQGLEIVNPQAAEKK 27 1 E7EVX8;Q8WWY3 E7EVX8 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 1 0 S(0.078)S(0.078)GT(0.074)AS(0.078)S(0.078)VAFT(0.614)PLQGLEIVNPQAAEKK;S(0.005)S(0.005)GT(0.005)AS(0.008)S(0.026)VAFT(0.95)PLQGLEIVNPQAAEKK ; 78.451 0.00061239 11795000 1810.47 1319.6 1614.56 1469.7 1726.09 1863.19 1732.86 1943.64 1669.47 1701.07 TRUE FALSE FALSE 1598.249451 1360.255312 1701.847997 1529.640719 1598.75978 1827.652755 1799.696991 2164.896121 1600.65374 1690.95196 0.945177326 0.804431672 1.00644373 0.904603297 0.945479125 1.080842507 1.064309947 1.280282452 0.946599181 1 10.72361996 -3.95358171 0.964365148 0.956794595 1.622001568 0.738270258 0.06168927 1.358815375 0.649363016 0.009811159 1.079993991 0.00011128 3.95358171 0.665206973 HSQPAT(ph)PTPLQSR ddPTM_HeLa_CUDC101_4h_R1 3 HSQPATPTPLQSR 13 0 Q9NR12-2;Q9NR12 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 1 0 HS(0.001)QPAT(0.996)PT(0.002)PLQSR;HSQPAT(0.993)PT(0.007)PLQSR;HS(0.001)QPAT(0.997)PT(0.001)PLQSR ;; 106.87 0.0077434 85956000 13105.5 10945.8 11328.5 11590.2 12202 11059.2 9345.1 5602.1 11477.2 11715.7 TRUE FALSE FALSE 11569.29316 11283.02712 11940.95298 12062.89845 11301.88277 10848.26419 9705.543637 6239.82042 11004.10496 11646.0145 0.993412224 0.968831623 1.025325272 1.035796277 0.970450687 0.931500145 0.833378976 0.535790199 0.944881613 1 13.5075487 -3.951110603 1.123659718 0.999010109 0.007708625 0.965162216 0.026193294 0.273247009 0.175277738 0.00304542 0.376755955 0.000111915 3.951110603 -0.991301484 TDLQGSAS(ph)PSKVEGVHTPR ddPTM_HeLa_CUDC101_4h_R1 2 TDLQGSASPSKVEGVHTPR 19 1 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 T(0.003)DLQGS(0.246)AS(0.676)PS(0.075)KVEGVHTPR;T(0.001)DLQGS(0.108)AS(0.741)PS(0.149)KVEGVHT(0.002)PR ; 69.289 0.0066081 111864000 15813.1 12516.3 13005.8 12777.4 15845 14130.8 13925.8 14816.5 14947.7 14104.4 TRUE FALSE FALSE 13959.51239 12901.91237 13708.93289 13298.5176 14676.14592 13861.27853 14462.92277 16503.15047 14331.54948 14020.5064 0.995649657 0.920217287 0.9777773 0.948504799 1.046762898 0.988643216 1.031554949 1.177072354 1.022184868 1 13.77525084 -3.949736442 1.473798082 0.989402649 1.403536351 0.743355713 0.033417877 0.946072052 1.021647963 0.004645441 0.713907367 0.00011227 3.949736442 0.414133702 RSS(ph)PPPPPS(ph)GSSSRTPAR ddPTM_HeLa_CUDC101_4h_R1 1 RSSPPPPPSGSSSRTPAR 18 2 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 2 0 RS(0.209)S(0.791)PPPPPS(0.415)GS(0.188)S(0.155)S(0.128)RT(0.113)PAR 90.084 0.03063 1052200 433.16 306.45 450.27 504.86 425.79 281.45 488.6 312.46 375 436.83 TRUE FALSE FALSE 382.3856414 315.8913613 474.6129582 525.450373 394.38032 276.0818102 507.4454657 348.0291834 359.5423413 434.2317157 0.880602746 0.727471877 1.092994687 1.210069081 0.908225507 0.635793748 1.168605257 0.801482643 0.827996501 1 8.762321292 -3.948182777 14.38288394 0.945564697 6.71E-05 0.051423757 0.175319005 1666536.834 13549987.83 0.022815408 42936657.38 0.000112672 3.948182777 -0.945497605 MLISAAS(ph)PDIR ddPTM_HeLa_CUDC101_4h_R1 1 MLISAASPDIR 11 0 F8VSE7;Q96AV8-2;Q96AV8-3;Q96AV8;F8VXV5 F8VSE7 E2F7 Transcription factor E2F7 1 0 MLIS(0.003)AAS(0.997)PDIR 98.182 0.015574 5176600 1750.9 1366.1 1134 1344.7 1410.9 1378.9 1250.2 385.57 1436.6 1645.9 TRUE FALSE FALSE 1545.662156 1408.187922 1195.30747 1399.542678 1306.820718 1352.59978 1298.420633 429.4617303 1377.38274 1636.110114 0.944717683 0.860692633 0.730578865 0.85540861 0.79873641 0.826716838 0.793602229 0.262489503 0.841864327 1 10.67605413 -3.948079136 0.450817578 0.964676573 2.88E-64 0.602050908 0.120225553 2.754404777 0.308175527 0.026145071 1.503605315 0.000112699 3.948079136 -0.964676573 VTPLPS(ph)LASPAVPAPGYCSR ddPTM_HeLa_CUDC101_4h_R1 1 VTPLPSLASPAVPAPGYCSR 20 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3;H7C3V8 C9JWC4 HJURP Holliday junction recognition protein 1 0 VTPLPS(0.856)LAS(0.143)PAVPAPGYCSR 137.52 2.12E-05 15454000 436.83 425.81 459.39 590 359.34 352.8 349.23 188.35 451.73 355.04 TRUE FALSE FALSE 385.6254496 438.9287014 484.226013 614.0627502 332.8322041 346.0709278 362.6999181 209.7910027 433.1094982 352.9282063 1.092645594 1.243677024 1.372024124 1.739908399 0.943059235 0.98057033 1.027687534 0.594429685 1.227188676 1 8.463230926 -3.94621622 1.278174344 1.126216762 1.56E-09 0.361643983 0.229513029 2.870169188 2.342806935 0.036846073 5.12386123 0.000113184 3.94621622 -1.12621676 LFVGS(ph)IPK ddPTM_HeLa_CUDC101_4h_R1 1 LFVGSIPK 8 0 O60506-2;O60506;O60506-4;O60506-3;B7Z645;O60506-5;O43390;B4DT28;O43390-4;O43390-3;O43390-2 O60506-2;O43390 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R 1 0 LFVGS(1)IPK 88.496 0.031316 12249000 4899.3 3593.4 3815.1 3995.2 4074.7 3450.9 3135.6 2674 3914.8 4333.7 TRUE FALSE FALSE 4325.011481 3704.108395 4021.355846 4158.141525 3774.117499 3385.079832 3256.541142 2978.397351 3753.430287 4307.92296 1.003966766 0.859836267 0.933479053 0.965231171 0.87608751 0.78578003 0.755942289 0.691376652 0.871285379 1 12.07277673 -3.945412674 0.356517891 1.008610217 0.347506069 0.668080727 0.057586898 1.813653515 0.135681916 0.013029247 0.538117419 0.000113393 3.945412674 -0.661104148 TQASSS(ph)FQDSSQPAGK ddPTM_HeLa_CUDC101_4h_R1 2 TQASSSFQDSSQPAGK 16 0 P46087;P46087-4;P46087-2 P46087 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 0 TQASS(0.022)S(0.978)FQDSSQPAGK;TQASS(0.086)S(0.906)FQDS(0.002)S(0.006)QPAGK ; 265.93 2.02E-70 12641000 4726.6 4379 4443.4 3933.5 4960 5346.4 4898.1 4263.2 4688.4 5462.1 TRUE FALSE FALSE 4172.555113 4513.9118 4683.623645 4093.925132 4594.110682 5244.426328 5087.021358 4748.505456 4495.142168 5429.611186 0.768481383 0.831350836 0.862607558 0.753999686 0.846121485 0.965893532 0.936903433 0.874557181 0.827893934 1 12.40663318 -3.944528854 13.4605643 0.878946927 0.850155148 0 0.077203138 10557834527 79983315064 0.013855243 7740376239 0.000113624 3.944528854 -0.028791778 EQAPDIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 EQAPDISPK 9 0 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 0 EQAPDIS(1)PK 95.428 0.022028 58698000 9925.3 8503.7 8667.1 8709.5 7922.4 8483.9 8494.6 4491.5 7888.4 9350.7 TRUE FALSE FALSE 8761.87138 8765.688918 9135.669643 9064.711056 7337.980336 8322.083743 8822.239567 5002.794205 7563.236813 9295.081621 0.942635228 0.943045933 0.982849857 0.975215864 0.789447649 0.895321212 0.949129865 0.538219502 0.813681592 1 13.18225182 -3.943190381 1.898930238 0.955637171 2.03E-13 0.673595069 0.075854299 0.88696391 1.507465409 0.009370642 2.006718128 0.000113975 3.943190381 -0.955637171 LPS(ph)GSGAASPTGSAVDIR ddPTM_HeLa_CUDC101_4h_R1 2 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LPS(0.999)GS(0.001)GAASPTGSAVDIR;LPS(0.782)GS(0.084)GAAS(0.132)PT(0.002)GSAVDIR ; 260.58 1.70E-70 629340000 426.29 217.33 54.923 110.46 150.11 395.36 360.79 1027.32 191.28 171.74 TRUE FALSE FALSE 376.3209324 224.0256797 57.89230351 114.9650362 139.0366844 387.8191667 374.7057912 1144.265956 183.3953574 170.7184828 2.204336204 1.312252054 0.339109759 0.673418802 0.814420806 2.271688222 2.194875358 6.702648344 1.074256017 1 7.41547545 -3.942819856 1.556130496 1.374733369 13.30432864 0.883914986 0.593297412 0.753531546 0.888401561 0.103322504 17.39305975 0.000114072 3.942819856 11.92959527 NLSPS(ph)FSR ddPTM_HeLa_CUDC101_4h_R1 1 NLSPSFSR 8 0 Q1ED39;H3BNU8 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 0 NLS(0.226)PS(0.774)FSR 102.95 0.016137 9789300 2096.9 1623.8 1807.6 2104.4 1851.8 1855.7 1383 944.1 1788.1 2138.6 TRUE FALSE FALSE 1851.104561 1673.827353 1905.324324 2190.226528 1715.196403 1820.305614 1436.342773 1051.572528 1714.393761 2125.879512 0.870747637 0.787357582 0.896252263 1.030268421 0.806817317 0.856260011 0.675646369 0.494652929 0.806439759 1 11.05384412 -3.942494232 0.795069606 0.927974873 2.02E-11 0.695896412 0.080740648 1.396818304 0.452284988 0.013001647 1.286671361 0.000114158 3.942494232 -0.927974873 S(ph)PGGPGSHVR ddPTM_HeLa_CUDC101_4h_R1 2 SPGGPGSHVR 10 0 O75382-3;O75382-2;O75382;A0A1W2PPI7;O75382-4 O75382-3 TRIM3 Tripartite motif-containing protein 3 1 0 S(1)PGGPGSHVR;S(1)PGGPGSHVR ; 81.278 0.026706 3925100 2164.56 1091.76 2201.7 2419.9 1514.85 1387.06 1351.28 866.18 2178.9 2375.9 TRUE FALSE FALSE 1910.833558 1125.395832 2320.730562 2518.593982 1403.102534 1360.604141 1403.399322 964.78243 2089.08482 2361.768041 0.809069106 0.476505657 0.982624255 1.066401923 0.594089898 0.576095585 0.594215561 0.408500078 0.884542759 1 11.20565156 -3.94231131 0.23888173 0.971261191 2.44E-33 0.419045639 0.171688891 9.40488784 0.385672556 0.137195183 2.774594759 0.000114206 3.94231131 -0.971261191 AIS(ph)PTSSSR ddPTM_HeLa_CUDC101_4h_R1 1 AISPTSSSR 9 0 A0A0U1RRL2;B1AM27;O14795;O14795-2 A0A0U1RRL2 UNC13B Protein unc-13 homolog B 1 0 AIS(0.528)PT(0.47)S(0.001)SSR 118.03 0.0062392 11285000 4313.4 3850.9 4204.5 3897.9 3708.9 3348.8 3112.4 2009.3 3998.7 4045 TRUE FALSE FALSE 3807.789791 3969.541665 4431.807988 4056.87321 3435.301836 3284.927219 3232.446311 2238.03059 3833.871894 4020.94016 0.946989918 0.987217294 1.10218203 1.00893648 0.854352887 0.816955013 0.803903113 0.556593856 0.953476486 1 11.97331715 -3.941668106 0.705648351 0.986460354 0.128202751 0.847642016 0.056761669 1.219229812 0.313195292 0.010220516 0.923607374 0.000114375 3.941668106 -0.858257603 S(ph)PQVKPASTMGMGPLGK ddPTM_HeLa_CUDC101_4h_R1 2 SPQVKPASTMGMGPLGK 17 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 S(1)PQVKPASTMGMGPLGK;S(1)PQVKPASTMGMGPLGK ; 86.575 0.0049113 184729000 5116.6 4297.3 4319.9 4427 4320.7 4461.2 3562.3 2138.74 5184.2 4642.7 TRUE FALSE FALSE 4516.839904 4429.694719 4553.446861 4607.552195 4001.970569 4376.110043 3699.699104 2382.205517 4970.505082 4615.085014 0.978712178 0.959829495 0.9866442 0.998367783 0.867149913 0.948218728 0.801653511 0.516178036 1.077012681 1 12.17214151 -3.941461766 1.012533997 0.983992719 5.70E-18 0.908452436 0.045576291 0.492568734 0.254525073 0.005137489 0.611299803 0.00011443 3.941461766 -0.983992719 KVAIIRT(ph)PPKS(ph)PATPK ddPTM_HeLa_CUDC101_4h_R1 1 KVAIIRTPPKSPATPK 16 3 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77 MAP2 Microtubule-associated protein 2 2 0 KVAIIRT(1)PPKS(0.969)PAT(0.031)PK 70.907 0.038067 21917000 2671.8 2658.3 2884.6 3272.8 2814.8 2011.3 1896.6 2550.5 2548 2621.6 TRUE FALSE FALSE 2358.615654 2740.199072 3040.550201 3406.27893 2607.157812 1972.937804 1969.752497 2840.838611 2442.970362 2606.006607 0.905068947 1.051493525 1.166746928 1.307087604 1.000441751 0.757073216 0.755850922 1.090111822 0.937438284 1 11.34762503 -3.940766614 21.32254375 0.976389168 3.174834155 0.032648541 0.159910771 1424.377462 662060.516 0.023167549 42455.71981 0.000114613 3.940766614 2.198444987 SKSPLPPEEEAKDEEEDQT(ph)LVNLDTYTSDLHFQVSK ddPTM_HeLa_CUDC101_4h_R1 1 SKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 36 2 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.294)KS(0.294)PLPPEEEAKDEEEDQT(0.41)LVNLDT(0.001)Y(0.001)TSDLHFQVSK 42.669 0.011835 643530000 2482.5 2120.2 1793.3 1624.7 2393.8 2213.5 2444.8 1663.4 2504.4 2109.9 TRUE FALSE FALSE 2191.505113 2185.520849 1890.251222 1690.962289 2217.214143 2171.281175 2539.096755 1852.754732 2401.167572 2097.350221 1.044892308 1.042039058 0.901256835 0.806237447 1.05715017 1.035249694 1.210621254 0.883378805 1.14485771 1 11.03435207 -3.940528928 13.92789898 1.014543635 0.000123346 0.129108796 0.107603985 327642.3681 2191346.053 0.013652966 9015913.191 0.000114676 3.940528928 -1.014420289 EEAQWT(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 1 EEAQWTPTK 9 0 H0Y2V6;Q5SW79;Q5SW79-3;Q5SW79-2 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 0 EEAQWT(0.815)PT(0.185)K 130.1 0.015762 47242000 4999.5 4816.9 4179.9 4292.5 4712.9 4412.1 4088.9 2265.6 4944.4 4618.8 TRUE FALSE FALSE 4413.466189 4965.30298 4405.878038 4467.566704 4365.238756 4327.946544 4246.610243 2523.506746 4740.589739 4591.327172 0.961261531 1.081452659 0.959608817 0.973044729 0.950757503 0.942635186 0.924919981 0.549624684 1.032509678 1 12.16469553 -3.939941421 1.624997587 0.983676066 4.90E-12 0.911535921 0.040648874 0.484513656 0.615149613 0.005383662 0.965756393 0.000114831 3.939941421 -0.983676066 TS(ph)PINEDIR ddPTM_HeLa_CUDC101_4h_R1 1 TSPINEDIR 9 0 A0A590UJ84;B1AKN3;Q9P2R6-2;Q9P2R6;D6RA28 A0A590UJ84 RERE Arginine-glutamic acid dipeptide repeats protein 1 0 T(0.185)S(0.815)PINEDIR 132.17 0.0029133 45476000 5513.5 4243.3 4558.5 4057.7 4479.2 4573.5 3471 3216.2 4914.6 4746.6 TRUE FALSE FALSE 4867.215888 4374.031043 4804.946299 4223.190545 4148.77834 4486.268107 3604.877633 3582.319208 4712.018108 4718.367012 1.031546693 0.927022216 1.018349418 0.895053423 0.879282669 0.950809485 0.764009587 0.759228606 0.998654428 1 12.20407193 -3.939444421 0.399542534 1.017283479 0.460065841 0.76298457 0.045696736 2.087009827 0.188237887 0.011806938 0.584800543 0.000114962 3.939444421 -0.557217638 MIPLEKPGSGGS(ph)SPGATSGSGR ddPTM_HeLa_CUDC101_4h_R1 1 MIPLEKPGSGGSSPGATSGSGR 22 1 Q9UEE5 Q9UEE5 STK17A Serine/threonine-protein kinase 17A 1 0 MIPLEKPGS(0.009)GGS(0.381)S(0.381)PGAT(0.111)S(0.073)GS(0.045)GR 56.332 0.010729 17944000 899.59 919.55 999.12 982.17 1301.4 675.53 718.99 937.98 1067 995.3 TRUE FALSE FALSE 794.1414239 947.8802456 1053.135449 1022.227138 1205.398315 662.6453908 746.7216851 1044.755852 1023.017808 989.3799113 0.802665806 0.958054873 1.064439895 1.033199812 1.218337163 0.669758283 0.75473706 1.055970351 1.033998969 1 9.950380797 -3.936993216 19.45299804 0.924162279 3.272457605 0.02058831 0.15660706 480.7367892 175775.2647 0.021840826 8794.74433 0.000115613 3.936993216 2.348295326 GYYS(ph)PYSVSGS(ph)GSTAGSR ddPTM_HeLa_CUDC101_4h_R1 2 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 GY(0.036)Y(0.024)S(0.94)PYS(0.093)VS(0.103)GS(0.698)GS(0.096)T(0.009)AGSR;GY(0.001)Y(0.043)S(0.908)PY(0.004)S(0.063)VS(0.066)GS(0.752)GS(0.159)T(0.004)AGSR ; 161.2 0.00022875 122174000 8543.9 8371 7916.7 7834.1 8634 10002.8 12107 19542.7 9499.5 8284.3 TRUE FALSE FALSE 7542.396994 8628.900588 8344.700749 8153.60846 7997.087021 9812.013256 12573.97105 21767.36197 9107.926589 8235.024615 0.915892465 1.047829362 1.013318252 0.990113429 0.971106632 1.191497745 1.526889309 2.64326617 1.105998709 1 13.00755725 -3.936183284 1.175103549 0.970386192 4.647905578 0.984785059 0.06114762 0.18783209 0.128234916 0.007443592 1.013279987 0.000115829 3.936183284 3.677519385 up RYEDDGIS(ph)DDEIEGKR ddPTM_HeLa_CUDC101_4h_R1 2 RYEDDGISDDEIEGKR 16 2 I3VM54;Q9Y2K7-3;Q9Y2K7 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 RYEDDGIS(1)DDEIEGKR;RYEDDGIS(1)DDEIEGKR ; 88.983 0.007948 33940000 2610.2 2135.04 2747.3 2609 2564.55 2126.11 2047.86 2167.7 2660.5 2295 TRUE FALSE FALSE 2304.236313 2200.818052 2895.827348 2715.406297 2375.368256 2085.557994 2126.846646 2414.462206 2550.833064 2281.349238 1.010032254 0.964700194 1.26934855 1.190263311 1.041212023 0.914177435 0.932275783 1.058348352 1.118124758 1 11.1556716 -3.934770625 20.11811531 1.023981259 1.763779905 0 0.11034737 318.0667933 707002.4158 0.01515316 64515.05028 0.000116206 3.934770625 0.739798645 SVTEQGAELSNEER ddPTM_HeLa_CUDC101_4h_R1 4 SVTEQGAELSNEER 14 0 P63104;E7EX29;E5RGE1;E5RIR4;E9PD24;E7EVZ2;E7ESK7 P63104 YWHAZ 14-3-3 protein zeta/delta 0 0 ;;; ;;; 218.94 8.06E-32 390632000 3995.63 3235.89 3160.4 3160.06 3905.27 3496.51 3003.68 3302.75 3737.15 3853.28 FALSE FALSE TRUE 3527.268308 3335.583935 3331.260784 3288.940906 3617.186012 3429.819897 3119.532944 3678.72171 3583.103095 3830.360519 0.920871101 0.870827672 0.869699018 0.858650482 0.944346099 0.895430046 0.814422801 0.960411348 0.935448002 1 11.90326447 -8.384513407 0.696919952 0.995369763 0.885307193 0.295105238 0.044139942 0.35752136 0.368734396 0.018475632 0.009359254 4.13E-09 8.384513407 -0.11006257 SVTLLIK ddPTM_HeLa_CUDC101_4h_R1 2 SVTLLIK 7 0 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 0 ; ; 117.93 0.034617 10682700 5900.4 4054.2 2899.6 3987.7 4363.6 3631.5 3362.4 3276.6 2839.6 1390.21 FALSE FALSE TRUE 5208.764056 4179.105097 3056.361147 4150.335642 4041.705922 3562.235188 3492.088894 3649.5949 2722.550486 1381.940969 3.769165379 3.024083655 2.211643779 3.003265505 2.924658876 2.577704307 2.526945052 2.640919534 1.970091738 1 10.43248028 -6.271948836 23.58252196 2.399460075 2.724988238 0.058549538 0.680415747 1388.504288 3115709.573 0.164345417 0.252881261 5.35E-07 6.271948836 0.325528163 NDS(ph)WGSFDLR ddPTM_HeLa_CUDC101_4h_R1 5 NDSWGSFDLR 10 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 NDS(0.999)WGS(0.001)FDLR;NDS(0.974)WGS(0.026)FDLR;NDS(0.96)WGS(0.04)FDLR;NDS(0.981)WGS(0.019)FDLR;NDS(0.999)WGS(0.001)FDLR ;;;; 141.34 0.0011327 345905500 10951.91 10881.7 8781.84 9292.73 11455.06 11762.27 12752 15899.5 10272.51 10315.1 TRUE FALSE FALSE 9668.143712 11216.95228 9256.612834 9671.727696 10610.04305 11537.9243 13243.84891 17709.43481 9849.07279 10253.74533 0.942889003 1.093937086 0.902754315 0.943238533 1.034748056 1.125239991 1.291610869 1.727118653 0.960534173 1 13.32386335 -3.934199152 0.96773658 0.974528813 2.597308279 0.954778726 0.049984302 0.459438035 0.215380452 0.007647862 0.902265343 0.000116359 3.934199152 1.622779466 SAGGSSPEGGEDS(ph)DREDGNYCPPVK ddPTM_HeLa_CUDC101_4h_R1 2 SAGGSSPEGGEDSDREDGNYCPPVK 25 1 B7Z7F3;Q9H6Z4-3;Q9H6Z4-2;Q9H6Z4;K7EID7;K7ENB9 B7Z7F3 RANBP3 Ran-binding protein 3 1 0 SAGGS(0.005)S(0.008)PEGGEDS(0.967)DREDGNY(0.019)CPPVK;SAGGS(0.017)S(0.078)PEGGEDS(0.599)DREDGNY(0.305)CPPVK ; 75.797 0.00015848 73597000 9315.6 7182.6 7582.5 6410.8 7840.6 7763.2 6244.9 3616.4 7841.2 7944.8 TRUE FALSE FALSE 8223.63949 7403.887393 7992.432886 6672.260134 7262.214559 7615.129894 6485.767885 4028.076358 7517.982417 7897.543976 1.04129075 0.937492392 1.01201499 0.844852546 0.919553545 0.964240265 0.821238591 0.51004165 0.951939291 1 12.94718835 -3.93393303 0.961644403 0.99957524 1.65E-37 0.830456736 0.060014011 0.951163948 0.440348199 0.009731259 1.143531003 0.000116431 3.93393303 -0.99957524 NYQQNYQNSESGEKNEGSES(ph)APEGQAQQR ddPTM_HeLa_CUDC101_4h_R1 1 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 H0Y449;P67809;C9J5V9 H0Y449 YBX1 Nuclease-sensitive element-binding protein 1 1 0 NY(0.001)QQNY(0.052)QNS(0.158)ES(0.158)GEKNEGS(0.284)ES(0.347)APEGQAQQR 44.6 0.024698 6915400 619.31 498.9 306.55 371.17 446.3 572.31 501.69 711.13 378.84 485.91 TRUE FALSE FALSE 546.7154206 514.2705177 323.1230203 386.3079169 413.3773382 561.3941403 521.0403514 792.0821647 363.2240549 483.0197857 1.131869619 1.064698658 0.668964357 0.79977659 0.855818644 1.162259098 1.078714303 1.639854491 0.751985872 1 8.915938476 -3.933845952 1.606716677 1.005642993 2.455664071 0.587743545 0.169039002 1.539640698 1.886950772 0.024437334 4.495882803 0.000116454 3.933845952 1.450021077 GLGLGANLTEAQALT(ph)PTGPSR ddPTM_HeLa_CUDC101_4h_R1 2 GLGLGANLTEAQALTPTGPSR 21 0 Q92917 Q92917 GPKOW G patch domain and KOW motifs-containing protein 1 0 GLGLGANLTEAQALT(0.988)PT(0.012)GPSR;GLGLGANLT(0.085)EAQALT(0.912)PT(0.004)GPSR ; 162.92 8.01E-07 25207500 2290.68 1666.75 1831.02 1765.31 2261.91 1894.7 1830.97 1008.96 2113.23 2140.32 TRUE FALSE FALSE 2022.169963 1718.100592 1930.01048 1837.306972 2095.053406 1858.561754 1901.591126 1123.815928 2026.121765 2127.589281 0.950451283 0.807533957 0.907134895 0.863562807 0.984707633 0.873552885 0.893777358 0.528210937 0.952308692 1 11.05500396 -3.933165502 1.548012354 0.947958431 1.88E-13 0.770444708 0.061665114 0.968784383 1.106740069 0.010050587 1.781735885 0.000116637 3.933165502 -0.947958431 SVTVVEDDEDEDGDDLLHHHHVSGSR ddPTM_HeLa_CUDC101_4h_R1 4 SVTVVEDDEDEDGDDLLHHHHVSGSR 26 0 P02545-2;Q3BDU5;Q5TCI8 P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;; ;;; 177.22 8.55E-14 91966700 8807.97 6546.66 6325.87 5505.15 9700.24 7680.58 7719.73 6077.81 9490.48 8922.95 FALSE FALSE TRUE 7775.513109 6748.354835 6667.865667 5729.673812 8984.672621 7534.085733 8017.482572 6769.683323 9099.278397 8869.875897 0.876620282 0.760817278 0.751742837 0.645970009 1.012942315 0.849401482 0.903900197 0.763221876 1.025863102 1 13.1146982 -8.281356816 0.959881385 0.981142416 0.819584063 0.384404944 0.095945963 0.414060603 0.798698348 0.03149733 0.020700928 5.23E-09 8.281356816 -0.161558353 GAES(ph)PFEEK ddPTM_HeLa_CUDC101_4h_R1 6 GAESPFEEK 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK ;;;;; 131.42 0.0023028 4061249000 44888.6 40048.3 38920.9 38095.9 42155.3 37598.9 36073.9 30186.3 40899.6 37581.8 TRUE FALSE FALSE 39626.82635 41282.14065 41025.08158 39649.61547 39045.5875 36881.76363 37465.28241 33622.58637 39213.70118 37358.26178 1.060724575 1.105033765 1.098152848 1.06133459 1.045166066 0.987245173 1.002864711 0.900004036 1.049666106 1 15.18913971 -3.932560997 1.024307557 1.043123315 0.740420238 0.662344686 0.033466623 2.068372403 1.079131433 0.006470791 0.802428426 0.000116799 3.932560997 -0.302703076 NQKPSQVNGAPGS(ph)PTEPAGQK ddPTM_HeLa_CUDC101_4h_R1 4 NQKPSQVNGAPGSPTEPAGQK 21 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 NQKPSQVNGAPGS(0.956)PT(0.044)EPAGQK;NQKPSQVNGAPGS(0.988)PT(0.012)EPAGQK;NQKPSQVNGAPGS(0.5)PT(0.5)EPAGQK;NQKPSQVNGAPGS(0.996)PT(0.004)EPAGQK ;;; 146.34 2.54E-07 541433000 47539.8 35157.3 38276.6 39154.7 38763.3 39858.8 35540.8 34744.8 34376 34887.9 TRUE FALSE FALSE 41967.25671 36240.45474 40345.94878 40751.59791 35903.80859 39098.5598 36911.62056 38700.00759 32959.00673 34680.38522 1.210115068 1.044984204 1.16336507 1.175061858 1.035277099 1.127396929 1.064337098 1.115904779 0.950364493 1 15.0818323 -3.930937683 19.09550646 1.102252663 1.400706113 0 0.080019406 11250.93547 668306.7378 0.011211347 171146.502 0.000117236 3.930937683 0.29845345 S(ph)PLAQMEEER ddPTM_HeLa_CUDC101_4h_R1 2 SPLAQMEEER 10 0 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;A0A0U1RRM2 G3V1Q4 7-Sep Septin-7 1 0 S(1)PLAQMEEER;S(1)PLAQMEEER ; 133.04 0.0019656 27262000 953.62 500.29 822.81 798.86 904.79 545.28 425.14 472.13 739 895.89 TRUE FALSE FALSE 841.8381092 515.7033419 867.2935975 831.4409638 838.0454443 534.8796925 441.5377922 525.8753708 708.5381072 890.5612064 0.945289446 0.579076809 0.973873094 0.933614622 0.94103071 0.600609693 0.495797245 0.590498853 0.795608547 1 9.798570958 -3.930926186 0.35649714 0.981311289 1.38E-15 0.377689162 0.148005655 4.237724372 0.314580215 0.044428861 1.870143021 0.000117239 3.930926186 -0.981311289 SVICDIS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 2 SVICDISPLR 10 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 SVICDIS(1)PLR;SVICDIS(1)PLR ; 132.03 0.002067 49098000 5075.7 4270.8 4470.3 4154.2 4640.2 4059.1 3656.6 2089.79 5799.5 4438.7 TRUE FALSE FALSE 4480.73414 4402.378286 4711.97794 4323.626232 4297.901691 3981.67943 3797.636287 2327.683246 5560.442155 4412.298415 1.015510221 0.997751709 1.067919143 0.979903403 0.974073212 0.902404837 0.860693437 0.527544383 1.260214435 1 12.10731465 -3.930212535 1.027714986 1.008375364 9.57E-17 0.766712349 0.084855765 0.404975437 0.211922093 0.004192087 0.525746522 0.000117432 3.930212535 -1.008375364 SQS(ph)SDTEQQSPTSGGGK ddPTM_HeLa_CUDC101_4h_R1 1 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SQS(0.499)S(0.499)DT(0.003)EQQSPTSGGGK 332.86 1.99E-191 66111000 2977.5 2484.1 2403.4 2633.7 2988.8 3342.6 3465.8 5165.9 2820.5 3247.8 TRUE FALSE FALSE 2628.481964 2560.632177 2533.335074 2741.11367 2768.322179 3278.845474 3599.477067 5753.965175 2704.237796 3228.481941 0.814154148 0.793138145 0.784683055 0.849041042 0.857468689 1.015599757 1.11491318 1.782251002 0.837618994 1 11.65664024 -3.92954884 1.309277335 0.884462119 2.899898842 0.940266647 0.069826215 0.635508743 0.526697006 0.013692229 2.103162287 0.000117612 3.92954884 2.015436723 APS(ph)DSSLGTPSDGRPELR ddPTM_HeLa_CUDC101_4h_R1 2 APSDSSLGTPSDGRPELR 18 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;M0R2H7;Q15642-5 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 APS(0.751)DS(0.109)S(0.14)LGTPSDGRPELR;APS(0.96)DS(0.032)S(0.008)LGTPSDGRPELR ; 101.61 0.0010124 460312000 1994.36 1702.32 1666.4 1720.6 1983.78 1521.31 1272.19 1614.16 1649.6 1504.64 TRUE FALSE FALSE 1760.584144 1754.766461 1756.490625 1790.773505 1837.440502 1492.293546 1321.258794 1797.90945 1581.60279 1495.690334 1.177104715 1.173215084 1.174367838 1.197288947 1.228489922 0.99772895 0.883377237 1.202059951 1.057440002 1 10.5465958 -3.929204213 21.21183387 1.096900265 4.540754792 0.078691859 0.105842082 1607.742828 484767.7785 0.016045002 1662.718046 0.000117705 3.929204213 3.443854527 SVVTSIFGVK ddPTM_HeLa_CUDC101_4h_R1 1 SVVTSIFGVK 10 0 J3KR24;A0A0A0MSX9;P41252 J3KR24 IARS "Isoleucine--tRNA ligase, cytoplasmic" 0 0 147.2 0.004358 427890 252.42 201.1 281.03 150.64 298.08 171.42 245.48 158.41 345.74 129.58 FALSE FALSE TRUE 222.8317102 207.2956526 296.2233319 156.7837503 276.0912323 168.1504491 254.9482458 176.4427541 331.4884509 128.8092524 1.729935592 1.609322691 2.299705389 1.217177706 2.143411495 1.305422134 1.979269665 1.369798759 2.57348323 1 7.009092416 -9.110215056 0.754171997 0.971299948 1.720953551 0 0.594115064 0.539977674 0.526922409 0.242341204 0.061875976 7.76E-10 9.110215056 0.749653604 SVVTVAVK(ac)GNK ddPTM_HeLa_CUDC101_4h_R1 1 SVVTVAVKGNK 11 1 Q14966-3;Q14966;Q14966-4 Q14966-3 ZNF638 Zinc finger protein 638 0 1 SVVTVAVK(1)GNK 121.36 0.001966 1438100 1182.9 1184.2 1343.8 1724.5 1469 1616 1465.9 1312.6 1523.5 1320 FALSE TRUE FALSE 1044.242255 1220.683798 1416.449893 1794.832564 1360.634797 1585.177492 1522.440254 1462.021078 1460.700685 1312.148581 0.795826227 0.930293883 1.079488949 1.367857718 1.036951772 1.20807774 1.160265137 1.114219151 1.113212868 1 10.35771538 -6.672736432 3.657533282 0.902211939 1.174243355 0.414618657 0.113327812 0.118327703 3.093875219 0.01671544 0.023838366 2.12E-07 6.672736432 0.272031416 TAHNSEAADLEESFNEHELEPSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 TAHNSEAADLEESFNEHELEPSSPK 25 0 A0A0D9SGE8;Q5JRC6;Q8IWS0-2 A0A0D9SGE8 PHF6 PHD finger protein 6 1 0 TAHNSEAADLEESFNEHELEPS(0.234)S(0.766)PK 168.03 1.17E-12 7343400 925.81 900.88 897.84 758.31 1236.7 840.83 603.28 970.78 1021 911.9 TRUE FALSE FALSE 817.2879552 928.635045 946.3799462 789.2371595 1145.471105 824.7925687 626.5487117 1081.289671 978.9139479 906.4759782 0.901610164 1.024445288 1.044020988 0.870665278 1.263653017 0.909889052 0.691191743 1.19284978 1.079911626 1 9.824124979 -3.929128867 20.24560197 0.961891806 7.478994403 0.164707863 0.143191427 465.0545195 134788.852 0.017709244 1987.506924 0.000117726 3.929128867 6.517102597 ETSTNGPVSQEAFSVTGPAAPGALPPPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 ETSTNGPVSQEAFSVTGPAAPGALPPPSPK 30 0 Q86UK7-2;Q86UK7-3 Q86UK7-2 1 0 ETSTNGPVSQEAFSVTGPAAPGALPPPS(1)PK 119.51 8.20E-14 5782500 764.59 755.29 667.69 799.43 836.35 828.68 881.23 896.54 685.38 777.88 TRUE FALSE FALSE 674.9659192 778.5595897 703.7873411 832.0342108 774.6541267 812.8743097 915.2193363 998.5984897 657.1283463 773.2531352 0.87289128 1.006862506 0.910164226 1.076017895 1.001811815 1.051239591 1.183596024 1.291425077 0.849823061 1 9.594796968 -3.92880047 0.593998403 0.943310831 1.682963422 0.802429006 0.057599659 1.570331508 0.28727573 0.010820914 0.867893858 0.000117815 3.92880047 0.739652591 YSPPAIS(ph)PLVSEK ddPTM_HeLa_CUDC101_4h_R1 2 YSPPAISPLVSEK 13 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 YSPPAIS(1)PLVSEK;YSPPAIS(1)PLVSEK ; 152 0.00025906 17708700 4454 3708.2 3449.2 3694 3819.4 3292.8 2758.46 1797.45 3726.5 3788.8 TRUE FALSE FALSE 3931.908872 3822.445247 3635.674185 3844.657287 3537.650471 3229.995326 2864.854726 2002.064442 3572.892093 3766.264049 1.043981203 1.014916957 0.965326418 1.020814589 0.939299642 0.857612553 0.760662208 0.531578354 0.948656824 1 11.87891843 -3.92723436 0.703799255 1.020035895 1.25E-12 0.956190868 0.031254134 0.422664126 0.106522303 0.004080159 0.38140341 0.00011824 3.92723436 -1.020035895 LPSDT(ph)DDSDASEDPGPGAER ddPTM_HeLa_CUDC101_4h_R1 1 LPSDTDDSDASEDPGPGAER 20 0 Q9UJK0 Q9UJK0 TSR3 Ribosome biogenesis protein TSR3 homolog 1 0 LPS(0.053)DT(0.673)DDS(0.274)DASEDPGPGAER 179.09 2.43E-18 0 488.68 428.11 577.86 412.68 423.62 464.63 351.65 220.13 461.65 518.71 TRUE FALSE FALSE 431.3976712 441.2995617 609.1008595 429.5108742 392.3703966 455.7679569 365.2132583 245.1887094 442.6205916 515.6246899 0.836650532 0.85585421 1.181287226 0.832991287 0.760961227 0.883914145 0.708292806 0.475517783 0.858416209 1 9.010177536 -3.92645722 0.785708311 0.9277752 3.84E-11 0.613022176 0.107942855 2.040607003 0.63459342 0.018223234 1.868857441 0.000118452 3.92645722 -0.9277752 IQIISTDSAVAS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 3 IQIISTDSAVASPQR 15 0 C9JMI6;C9JKS0;P49116;P49116-2;C9J2Y1 C9JMI6 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 0 IQIISTDSAVAS(1)PQR;IQIISTDSAVAS(1)PQR;IQIIS(0.001)TDS(0.005)AVAS(0.994)PQR ;; 181.81 1.25E-10 69845000 5675.56 4328.18 4319.65 4465.23 5505 5344 3995.14 2819.84 5384.1 5906.8 TRUE FALSE FALSE 5010.27946 4461.526096 4553.183345 4647.34138 5098.907118 5242.072104 4149.233888 3140.839187 5162.165119 5871.666091 0.853297749 0.759839886 0.775449979 0.791485978 0.868391874 0.892774218 0.706653584 0.534914476 0.879165307 1 12.51955421 -3.926414065 0.060847199 1.38223302 5.47E-12 0.454108002 0.08843952 85.8154411 0.754781553 5.234494879 13.50168768 0.000118464 3.926414065 -1.38223302 SKTPS(ph)SPCPASK ddPTM_HeLa_CUDC101_4h_R1 1 SKTPSSPCPASK 12 1 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 1 0 SKT(0.002)PS(0.774)S(0.224)PCPASK 107.69 0.0035575 47887000 7473.1 5580.5 7946.5 7396.6 6890.2 6107.4 6524.9 3485.7 9239.7 6883.3 TRUE FALSE FALSE 6597.114546 5752.42859 8376.111827 7698.265319 6381.923673 5990.911521 6776.567579 3882.497998 8858.835655 6842.357825 0.964158075 0.84070853 1.224155772 1.125089555 0.932708262 0.875562441 0.990384857 0.56742107 1.294705112 1 12.74027784 -3.926337502 1.789186372 0.992326577 5.98E-13 0.459921831 0.143861489 1.505170625 2.197313869 0.015221888 3.383041522 0.000118485 3.926337502 -0.992326577 EEGQY(ph)S(ph)EIEELPR ddPTM_HeLa_CUDC101_4h_R1 1 EEGQYSEIEELPR 13 0 M0R1R5;P06734 M0R1R5 FCER2 Low affinity immunoglobulin epsilon Fc receptor;Low affinity immunoglobulin epsilon Fc receptor membrane-bound form;Low affinity immunoglobulin epsilon Fc receptor soluble form 2 0 EEGQY(1)S(1)EIEELPR 81.632 0.002241 0 2015.1 1904.7 2057.1 1710.3 2272.5 1642.9 1485.7 1713.5 1728.6 1753.4 TRUE FALSE FALSE 1778.893033 1963.381549 2168.313048 1780.053427 2104.862202 1611.56442 1543.003947 1908.557914 1657.346376 1742.970699 1.020609832 1.126457003 1.244032989 1.021275589 1.207629138 0.924607867 0.885272453 1.095002868 0.950874491 1 10.7673326 -3.925747933 21.03289527 1.033920644 3.321702396 0.014674278 0.111944063 1977.817506 689372.8334 0.014987708 49159.51963 0.000118646 3.925747933 2.287781752 FQETEFLS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 2 FQETEFLSPPR 11 0 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 0 FQET(0.007)EFLS(0.993)PPR;FQETEFLS(1)PPR ; 119.88 0.0042679 66859000 4129.3 3726.9 4006.38 3670.82 3992.5 3781.95 3134.81 1905.79 4298.8 4211.5 TRUE FALSE FALSE 3645.269714 3841.721372 4222.977021 3820.531906 3697.981229 3709.815605 3255.720672 2122.73743 4121.601644 4186.449811 0.870730542 0.91765614 1.008725104 0.912594699 0.883321525 0.886148353 0.777680569 0.507049535 0.984509986 1 12.03151161 -3.925197997 1.047695907 0.938144304 6.98E-18 0.905527994 0.042788954 0.860502699 0.463784927 0.008185646 1.062303493 0.000118796 3.925197997 -0.938144304 GYYS(ph)PYSVSGSGS(ph)TAGSR ddPTM_HeLa_CUDC101_4h_R1 2 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 GYY(0.004)S(0.996)PYS(0.001)VS(0.003)GS(0.027)GS(0.968)T(0.002)AGSR;GY(0.001)YS(0.999)PYS(0.001)VS(0.007)GS(0.077)GS(0.84)T(0.074)AGSR ; 187.04 2.63E-10 180491000 10992.3 8493 7900.4 8169.4 10801 12184.5 15067.3 26019 8730.3 9482.6 TRUE FALSE FALSE 9703.799257 8754.659263 8327.519521 8502.583443 10004.23175 11952.10096 15648.45081 28980.89779 8370.433339 9426.197073 1.029450072 0.928758352 0.883444241 0.902016304 1.06132215 1.267966378 1.660102233 3.074505823 0.887996853 1 13.20246013 -3.922625011 1.179295736 0.989888703 5.664360167 0.987903939 0.070679594 0.22354888 0.150228263 0.010717278 1.55100917 0.000119502 3.922625011 4.674471465 up AAKPTTT(ph)PEVK ddPTM_HeLa_CUDC101_4h_R1 1 AAKPTTTPEVK 11 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 AAKPT(0.025)T(0.025)T(0.951)PEVK 138.42 0.025579 38460000 6222 5990.2 5862.7 5557.7 5996.9 5235.1 5022.7 2747.8 5957.5 5992.1 TRUE FALSE FALSE 5492.666592 6174.750962 6179.655296 5784.367028 5554.520635 5135.24919 5216.427221 3060.598445 5711.929328 5956.458723 0.922136264 1.03664799 1.037471354 0.971108388 0.932520629 0.862131248 0.87575982 0.513828533 0.958947186 1 12.54023915 -3.922428941 1.151868266 0.971510262 3.13E-21 0.897969158 0.046021003 0.765514554 0.491890317 0.007594648 1.078097693 0.000119556 3.922428941 -0.971510262 AGGPAT(ph)PLSPTR ddPTM_HeLa_CUDC101_4h_R1 1 AGGPATPLSPTR 12 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 AGGPAT(0.993)PLS(0.006)PT(0.001)R 109.16 0.028787 25203000 3748.8 3288.7 3632.5 3087.2 3295.3 3070.5 2797.3 3032.6 2988.7 3092.4 TRUE FALSE FALSE 3309.371347 3390.020949 3828.883938 3213.10936 3052.212284 3011.935328 2905.192798 3377.818926 2865.504521 3074.006267 1.076566233 1.102802224 1.245568032 1.045251402 0.992910235 0.979807803 0.945083564 1.098832804 0.932172635 1 11.58590439 -3.922353041 20.48644327 1.043914803 3.239917308 0.037630235 0.087231454 1476.768573 432266.6147 0.01159014 16320.1729 0.000119577 3.922353041 2.196002505 IGTLHT(ph)SPDLK ddPTM_HeLa_CUDC101_4h_R1 2 IGTLHTSPDLK 11 0 Q9UPZ3-2;Q9UPZ3 Q9UPZ3-2 HPS5 Hermansky-Pudlak syndrome 5 protein 1 0 IGT(0.001)LHT(0.756)S(0.243)PDLK;IGTLHT(0.796)S(0.204)PDLK ; 172.21 3.48E-06 82462000 4992.7 4109.6 3790.7 4446.8 4937.1 4041.9 3953.8 3133.1 4194.2 4422.4 TRUE FALSE FALSE 4407.463274 4236.211905 3995.636708 4628.159725 4572.899969 3964.807492 4106.29939 3489.75944 4021.313301 4396.095368 1.00258591 0.963630574 0.90890583 1.052788745 1.040218554 0.901892966 0.934078778 0.793831604 0.914746602 1 12.10200697 -3.922294966 0.966446666 0.996451288 0.564091055 0.515218001 0.051177822 1.55956606 0.717605247 0.006673203 0.819626488 0.000119593 3.922294966 -0.432360233 RDSS(ph)ESQLASTESDKPTTGR ddPTM_HeLa_CUDC101_4h_R1 1 RDSSESQLASTESDKPTTGR 20 2 A0A087WVF1;Q96B23-2;Q96B23;K7EQH1 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 0 RDS(0.258)S(0.371)ES(0.371)QLAS(0.001)TESDKPTTGR 101.54 0.00052374 106720000 714.25 844.37 793.17 711.32 831.21 1027 659.68 822.54 750.39 967.5 TRUE FALSE FALSE 630.5266977 870.3840389 836.0511694 740.3307042 769.8932943 1007.411686 685.1240786 916.1746288 719.4586066 961.745267 0.655606759 0.905004754 0.869306248 0.76977837 0.800516853 1.047482863 0.712375826 0.952616727 0.748076056 1 9.909511014 -3.922045953 17.91743953 0.841474092 3.723612185 0.080256563 0.117955434 303.4036421 73718.47653 0.019083885 1980.597298 0.000119661 3.922045953 2.882138093 S(ph)YSLSELSVLQAK ddPTM_HeLa_CUDC101_4h_R1 1 SYSLSELSVLQAK 13 0 Q9P0V3;Q9P0V3-2 Q9P0V3 SH3BP4 SH3 domain-binding protein 4 1 0 S(0.48)YS(0.26)LS(0.26)ELSVLQAK 203.74 4.23E-17 194650000 1608.8 1555.9 1005.8 1272.2 1274.1 1563.4 1106.4 1325.4 1132.9 1223.7 TRUE FALSE FALSE 1420.218903 1603.835435 1060.17659 1324.085815 1180.112181 1533.58075 1149.074219 1476.278179 1086.201382 1216.421378 1.167538592 1.318486722 0.871553731 1.088509162 0.970150807 1.260731501 0.944635008 1.213624 0.892948284 1 10.24842736 -3.921751605 16.35656672 1.081380193 3.733101766 0.07289864 0.145975401 26511471.86 81968871.51 0.017752455 2478437528 0.000119743 3.921751605 2.651721573 GRS(ph)PS(ph)PIGVGSEMCR ddPTM_HeLa_CUDC101_4h_R1 1 GRSPSPIGVGSEMCR 15 1 Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5;Q9Y4B5-4 Q9Y4B5-2 MTCL1 Microtubule cross-linking factor 1 2 0 GRS(1)PS(1)PIGVGSEMCR 80.541 0.021659 8296300 1166.9 1236.1 1166.2 1126.4 1305.4 1112.1 1187 987.71 882.3 1256.3 TRUE FALSE FALSE 1030.117751 1274.182776 1229.2483 1172.339461 1209.103243 1090.888545 1232.782988 1100.146914 845.9312206 1248.827472 0.824867946 1.020303288 0.984321956 0.938752139 0.968190779 0.873530227 0.987152361 0.880943876 0.677380375 1 10.28635846 -3.920318864 15.46289975 0.932541604 0.00039338 0 0.099704029 3208016.228 10330618.53 0.010222477 98907544.68 0.000120138 3.920318864 -0.932148224 AVTPS(ph)SEAK ddPTM_HeLa_CUDC101_4h_R1 2 AVTPSSEAK 9 0 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHH4;A0A5F9ZHX3;F8W0B5 Q99700 ATXN2 Ataxin-2 1 0 AVT(0.077)PS(0.728)S(0.195)EAK;AVT(0.348)PS(0.53)S(0.122)EAK ; 103.31 0.014638 297606000 19209.3 12050.6 18937.4 18565.5 15788.7 13999.1 14231 7557.6 16370.2 16346.1 TRUE FALSE FALSE 16957.61497 12421.8647 19961.21313 19322.68134 14623.99906 13732.09049 14779.89444 8417.926635 15695.41343 16248.87267 1.043617937 0.764475478 1.22846757 1.18917058 0.90000084 0.845110351 0.909595068 0.518062195 0.965938607 1 13.98805201 -3.920158382 0.962835269 1.021612348 1.26E-15 0.543275521 0.131835927 1.950729841 0.888632749 0.019583736 2.41584781 0.000120183 3.920158382 -1.021612348 EVQAEQPS(ph)SSSPRR ddPTM_HeLa_CUDC101_4h_R1 1 EVQAEQPSSSSPRR 14 1 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 0 EVQAEQPS(0.351)S(0.216)S(0.216)S(0.216)PRR 73.735 0.02068 4817300 1458 1523.3 1557.2 1573.8 1417.4 1344.4 1167.2 1311.5 1621.3 1373.1 TRUE FALSE FALSE 1287.09545 1570.231067 1641.386942 1637.986367 1312.841226 1318.75781 1212.219295 1460.795859 1554.469328 1364.93274 0.942973534 1.150409116 1.202540531 1.200049144 0.961835838 0.966170545 0.888116505 1.070232852 1.138861485 1 10.41461415 -3.919611166 20.05269986 1.008391014 3.601712268 0 0.115924253 1636.038487 418467.5344 0.016294816 4855.889261 0.000120334 3.919611166 2.593321254 SYDKPAVDDDDEGMETLEEDTEESSR ddPTM_HeLa_CUDC101_4h_R1 1 SYDKPAVDDDDEGMETLEEDTEESSR 26 1 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-5;Q8TEW0-9;Q8TEW0-8;Q5VWU8;Q8TEW0-10;F5GZI3 Q5VWV2;F5GZI3 PARD3 Partitioning defective 3 homolog 0 0 138 7.90E-11 4221300 1921.8 1525.7 1521.1 1435.7 1902.1 1481.4 1486.2 1542.6 1892.8 1908 FALSE FALSE TRUE 1696.529517 1572.705009 1603.335267 1494.254052 1761.785873 1453.144763 1543.523232 1718.203349 1814.777983 1896.651131 0.894486861 0.829200997 0.84535065 0.787838115 0.928892954 0.766163444 0.813815048 0.905914282 0.956832784 1 10.88923862 -8.261750541 0.605186828 0.996747757 0.83352114 0.546568811 0.048873178 0.330149135 0.265788156 0.023967319 0.012460417 5.47E-09 8.261750541 -0.163226617 GQTPLTEGSEDLDGHS(ph)DPEESFAR ddPTM_HeLa_CUDC101_4h_R1 1 GQTPLTEGSEDLDGHSDPEESFAR 24 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 1 0 GQTPLTEGSEDLDGHS(0.984)DPEES(0.015)FAR 129.88 5.47E-09 15705000 1194.3 913.33 789.64 768.9 1034.9 1285.9 1735.6 2698.5 631.69 607.14 TRUE FALSE FALSE 1054.305964 941.4686147 832.3303269 800.2590655 958.5574888 1261.3736 1802.542673 3005.686332 605.6514708 603.5287043 1.746902769 1.559940079 1.379106447 1.325966868 1.588255011 2.089997694 2.986672648 4.98018787 1.003517259 1 9.237278578 -3.919445256 0.932397833 1.368772956 9.294150392 0.964260714 0.216472118 0.569903841 0.24395302 0.044038065 5.303798824 0.00012038 3.919445256 7.925377436 up SYEALVQHVIEDHER ddPTM_HeLa_CUDC101_4h_R1 1 SYEALVQHVIEDHER 15 0 Q9H2P0;A0A669KBJ7;A0A2R8Y6X0 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 0 0 115.09 0.0011992 4881700 2624.6 2207.4 2207.7 2297.3 2905.8 2552.4 2408.6 2332.6 2934.3 2877.3 FALSE FALSE TRUE 2316.948367 2275.407378 2327.05494 2390.993824 2691.444923 2503.717223 2501.500509 2598.133755 2813.346912 2860.185692 0.810069211 0.795545333 0.813602748 0.83595755 0.941003562 0.875368767 0.874593743 0.908379397 0.983623868 1 11.4818931 -9.375344141 1.113881811 0.999527492 0.853350402 0.602967303 0.043628205 0.292961879 0.653478476 0.032881484 0.008591054 4.21E-10 9.375344141 -0.14617709 SYEDDDDMDLQPNK ddPTM_HeLa_CUDC101_4h_R1 2 SYEDDDDMDLQPNK 14 0 Q9BTE3;Q9BTE3-2 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein 0 0 ; ; 193.3 2.45E-23 10101000 2391.7 2265.6 1853.11 1953.56 1846.51 1999.18 2071.88 2030.74 2335.74 2503 FALSE FALSE TRUE 2111.348552 2335.400451 1953.294732 2033.234621 1710.296636 1961.048972 2151.793106 2261.911233 2239.459809 2488.112045 0.848574547 0.938623506 0.785050953 0.817179687 0.687387306 0.788167469 0.864829665 0.909087369 0.900063891 1 11.28083574 -8.857069619 0.442253493 1.027316716 0.810812715 0.298995833 0.071035801 0.976761324 0.320736532 0.094328455 0.022759014 1.39E-09 8.857069619 -0.216504 RTGSNISGAS(ph)SDISLDEQYK ddPTM_HeLa_CUDC101_4h_R1 1 RTGSNISGASSDISLDEQYK 20 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 0 RT(0.08)GS(0.08)NIS(0.028)GAS(0.6)S(0.212)DISLDEQYK 80.453 0.0019125 25701000 1973.4 1285.2 1191.7 1248.4 1260.5 1485 1007.2 595.3 1485.8 1424.8 TRUE FALSE FALSE 1742.081043 1324.795489 1256.126907 1299.315148 1167.515426 1456.676099 1046.048041 663.0665457 1424.554695 1416.325226 1.230000717 0.935375198 0.886891572 0.917384739 0.824327213 1.028489836 0.738564859 0.468159808 1.005810437 1 10.46793687 -3.916884514 0.4482831 1.092874615 1.86E-11 0.619300919 0.118118398 3.130647055 0.339960776 0.03225963 1.937291171 0.000121092 3.916884514 -1.092874615 SYELPDGQVITIGNER ddPTM_HeLa_CUDC101_4h_R1 7 SYELPDGQVITIGNER 16 0 P60709;A0A2R8Y793;P63267-2;Q6S8J3;A5A3E0;Q562R1;A0A2R8YEA7;Q9BYX7;P63267;P68133;P68032;P62736;P63261 P60709;P63267;P63261 ACTB;ACTG2;POTEE;POTEF;ACTBL2;POTEKP;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Beta-actin-like protein 2;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;;;; ;;;;;; 262.37 2.79E-69 851547940 15395.28 14854.968 13587.78 13426.03 13791.2 13456.21 13396.02 13367.52 14120.9 13640.39 FALSE FALSE TRUE 13590.66862 15312.63196 14322.37649 13973.60154 12773.85065 13199.55521 13912.70898 14889.22444 13538.83053 13559.25635 1.002316666 1.129312077 1.056280382 1.030558105 0.942076049 0.973471912 1.026067257 1.098085622 0.998493588 1 13.72699044 -7.467898239 24.99808806 1.001021734 1.033129863 0.093776253 0.050911701 647.1033246 294221.277 0.009223693 0.010541971 3.40E-08 7.467898239 0.032108129 S(ph)PYSGPK ddPTM_HeLa_CUDC101_4h_R1 1 SPYSGPK 7 0 Q14498-2;Q14498;G3XAC6;Q5QP22;Q5QP23 Q14498-2 RBM39 RNA-binding protein 39 1 0 S(0.999)PYS(0.001)GPK 96.948 0.025442 104560000 4343.8 2654.4 3610.5 4426.5 2568.3 2980.1 2737 1628.6 3399.8 3707.8 TRUE FALSE FALSE 3834.626349 2736.178918 3805.694551 4607.031803 2378.841626 2923.259558 2842.567007 1813.993241 3259.658805 3685.745841 1.04039359 0.742367769 1.032543945 1.249959168 0.645416621 0.793125648 0.771232508 0.492164495 0.88439598 1 11.84774087 -3.916519963 0.533861382 1.013397628 1.57E-15 0.439513234 0.157369068 3.129865531 0.465144267 0.028944755 2.138073309 0.000121194 3.916519963 -1.013397628 T(ph)PEEGGYSYDISEK ddPTM_HeLa_CUDC101_4h_R1 2 TPEEGGYSYDISEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(1)PEEGGYSYDISEK;T(1)PEEGGYSYDISEK ; 166.79 4.58E-05 359960000 7235 5775 5491.8 5167.6 5497.1 5302.3 4421.6 3311.9 6275.9 5881.7 TRUE FALSE FALSE 6386.924268 5952.920905 5788.70332 5378.357064 5091.589885 5201.167462 4592.142593 3688.913309 6017.204746 5846.715387 1.092395276 1.018164989 0.990077836 0.919893771 0.870846201 0.889587934 0.785422633 0.630937726 1.029159853 1 12.51341065 -3.916105388 0.45904221 1.045154242 0.224796967 0.919697018 0.036677692 1.42948732 0.161775221 0.010969421 0.680016632 0.000121309 3.916105388 -0.820357276 SYETLVDFDNHLDDIR ddPTM_HeLa_CUDC101_4h_R1 2 SYETLVDFDNHLDDIR 16 0 M0R1B0;O43402 M0R1B0 EMC8 ER membrane protein complex subunit 8 0 0 ; ; 195.6 3.06E-16 18335200 4417.5 3913.2 4081.8 3772.5 4078.5 3960 3782.8 3816.4 5366.6 4582.4 FALSE FALSE TRUE 3899.687346 4033.761054 4302.474455 3926.358856 3777.637181 3884.469598 3928.703863 4250.84355 5145.386477 4555.143681 0.856106332 0.885539806 0.944531008 0.861961583 0.829312409 0.852765548 0.862476387 0.93319637 1.129577207 1 12.15328085 -9.356837597 0.773219658 1.011892995 0.874972753 0.611531994 0.054189636 0.423119292 0.388335434 0.037699892 0.007056222 4.40E-10 9.356837597 -0.136920242 S(ph)QGGEEEGPLSDK ddPTM_HeLa_CUDC101_4h_R1 2 SQGGEEEGPLSDK 13 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 0 S(1)QGGEEEGPLSDK;S(1)QGGEEEGPLSDK ; 128.82 0.0012827 150708000 4677.3 4046.2 4130.5 3936 4132.3 3663.6 3531.7 2741.5 4252.9 3538.9 TRUE FALSE FALSE 4129.033984 4170.858626 4353.807324 4096.527093 3827.468462 3593.722934 3667.918852 3053.581278 4077.593662 3517.850465 1.173737777 1.185627038 1.237632858 1.164497222 1.088013405 1.021567849 1.042659115 0.868024752 1.159115119 1 11.78047844 -3.915626992 1.033750776 1.108848186 0.587139096 0.566655134 0.069795045 2.73860343 1.418878264 0.014011806 1.864333224 0.000121443 3.915626992 -0.521709091 GRSECDSS(ph)PEPK ddPTM_HeLa_CUDC101_4h_R1 3 GRSECDSSPEPK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GRSECDS(0.018)S(0.982)PEPK;GRSECDS(0.041)S(0.959)PEPK;GRSECDS(0.07)S(0.93)PEPK ;; 105.99 0.0037968 81514000 17250.9 10185.1 19460.1 20459.8 15632.5 13108.1 15166.3 7719.4 20147.7 16127.4 TRUE FALSE FALSE 15228.77565 10498.89086 20512.17187 21294.23908 14479.32162 12858.08483 15751.26927 8598.145293 19317.20328 16031.47351 0.949929877 0.654892444 1.279493857 1.328277096 0.903180959 0.802052589 0.982521617 0.536329071 1.204954945 1 13.96861941 -3.915275302 1.421935962 0.989092724 1.33E-17 0.324853195 0.201352858 2.762123571 2.595692382 0.027521285 4.929002892 0.000121542 3.915275302 -0.989092724 RHVTLPS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 RHVTLPSSPR 10 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 RHVTLPS(0.676)S(0.324)PR 94.402 0.011905 2681100 1512.9 783.17 800.76 836.99 1701.8 1364.3 979.93 1170.6 1183.5 1226.2 TRUE FALSE FALSE 1335.560155 807.2985394 844.0515078 871.12607 1576.261604 1338.278251 1017.726228 1303.856372 1134.715629 1218.906508 1.095703523 0.662313749 0.692466159 0.714678332 1.293176789 1.097933469 0.834950197 1.069693503 0.930929174 1 10.25137176 -3.914727803 19.1438927 0.98345856 4.771528216 0 0.201685371 1353.790117 307770.0361 0.028992742 2790.246299 0.000121695 3.914727803 3.788069655 TAPTALGITLSSS(ph)PTSTPELR ddPTM_HeLa_CUDC101_4h_R1 3 TAPTALGITLSSSPTSTPELR 21 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 TAPTALGITLSS(0.166)S(0.833)PT(0.001)STPELR;TAPTALGITLS(0.001)S(0.211)S(0.774)PT(0.012)S(0.002)TPELR;TAPTALGITLSS(0.255)S(0.71)PT(0.033)S(0.001)TPELR ;; 273.79 1.56E-88 162471000 5697.4 5981.8 4953 4920.4 5966.6 5600.7 4715.3 5007.7 5940.2 5495.1 TRUE FALSE FALSE 5029.559409 6166.092168 5220.774162 5121.07518 5526.455805 5493.875979 4897.170701 5577.756326 5695.342442 5462.414901 0.920757485 1.128821644 0.95576302 0.937511206 1.011723918 1.005759555 0.896521189 1.021115464 1.042641862 1 12.41532318 -3.91322317 19.95338864 0.973212128 3.604045465 0 0.065197324 1028.070958 256645.3334 0.008298001 10451.42918 0.000122117 3.91322317 2.630833337 AVPPGNDPVS(ph)PAMVR ddPTM_HeLa_CUDC101_4h_R1 1 AVPPGNDPVSPAMVR 15 0 A0A0A0MR08;E7ESU0;O94966-2;O94966-4;O94966-3;O94966;O94966-7;O94966-6;O94966-5;H0YB23 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 19 1 0 AVPPGNDPVS(1)PAMVR 85.988 0.014718 17674000 736.45 1014 740.69 799.19 885.42 936.69 578.92 805.71 1113 894.58 TRUE FALSE FALSE 650.1244474 1045.240138 780.7339419 831.7844226 820.1043306 918.8241989 601.2491383 897.4287696 1067.121669 889.2589984 0.731085599 1.175405748 0.877960126 0.935368013 0.922233379 1.033247007 0.676123761 1.009187167 1.200012225 1 9.796459858 -3.911614786 21.04026521 0.897581932 9.091345692 0 0.166352 2088.759719 504142.8812 0.01958961 11363.74726 0.00012257 3.911614786 8.19376376 VHDRS(ph)EEEEEEEEEEEEEQPR ddPTM_HeLa_CUDC101_4h_R1 4 VHDRSEEEEEEEEEEEEEQPR 21 1 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9;V9GYQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 0 VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR ;;; 162.37 1.03E-07 289736000 2903.62 2401.49 2619.12 2474.81 2779.33 2914.14 3034.66 2326.76 2769.91 2937.41 TRUE FALSE FALSE 2563.262065 2475.47706 2760.71755 2575.743449 2574.304363 2858.557635 3151.707853 2591.628953 2655.733137 2919.938155 0.877848067 0.847784073 0.945471241 0.882122604 0.881629756 0.978978829 1.079374865 0.887562961 0.909516913 1 11.5117221 -3.910477631 13.92201413 0.937907635 7.19E-05 0.037819879 0.066653658 429995.8358 1202669.764 0.010251783 12013543.37 0.000122892 3.910477631 -0.937835728 ADFS(ph)PFGNSQGPSR ddPTM_HeLa_CUDC101_4h_R1 1 ADFSPFGNSQGPSR 14 0 Q9H2M9 Q9H2M9 RAB3GAP2 Rab3 GTPase-activating protein non-catalytic subunit 1 0 ADFS(0.98)PFGNS(0.016)QGPS(0.003)R 108.66 0.0039004 6305000 1549.3 1597.9 1399.9 1393.4 1824.4 1382.5 1415.5 893.05 1358.6 1579.7 TRUE FALSE FALSE 1367.693403 1647.129405 1475.582828 1450.228875 1689.817647 1356.131116 1470.096309 994.7112022 1302.597933 1570.303874 0.870973717 1.04892399 0.939679799 0.923533909 1.076108691 0.863610629 0.936185877 0.633451409 0.829519658 1 10.61682805 -3.909703615 1.75232117 0.951121318 0.171638776 0.594362722 0.076248152 1.382505499 1.861721637 0.010015194 2.427228224 0.000123111 3.909703615 -0.779482543 SYNPFDDDGEDEGARPAPWR ddPTM_HeLa_CUDC101_4h_R1 2 SYNPFDDDGEDEGARPAPWR 20 1 O95721 O95721 SNAP29 Synaptosomal-associated protein 29 0 0 ; ; 140.75 2.85E-05 41374000 1568.13 1547.98 1526.25 1796.46 1761.99 1395.37 1293.33 1255.71 1293.23 1361.98 FALSE FALSE TRUE 1384.316179 1595.671429 1608.763692 1869.727404 1632.011508 1368.755642 1343.214171 1398.654951 1239.922512 1353.878882 1.02248155 1.17859245 1.188262638 1.381015265 1.205433905 1.01098825 0.992122847 1.033072433 0.915829716 1 10.40288297 -7.31678031 6.519241143 1.010224213 1.144023658 0.294038899 0.111940888 0.272063904 25.80774504 0.02059304 0.023556583 4.82E-08 7.31678031 0.133799445 SECDSS(ph)PEPK ddPTM_HeLa_CUDC101_4h_R1 1 SECDSSPEPK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SECDS(0.117)S(0.883)PEPK 213.35 3.28E-24 59611000 7851.2 3949.2 6723.6 7185.1 5214.5 5003.6 5275.8 2553.5 7846.2 6649 TRUE FALSE FALSE 6930.894238 4070.870171 7087.098154 7478.139435 4829.836724 4908.164667 5479.289373 2844.180118 7522.776315 6609.451452 1.048633807 0.615916495 1.072267223 1.131431177 0.730746985 0.742597885 0.829008188 0.430320147 1.138184669 1 12.69031483 -3.908976849 0.511953451 1.008193433 4.69E-17 0.498216608 0.162310023 3.420699141 0.468377507 0.031221798 2.233544532 0.000123317 3.908976849 -1.008193433 AIS(ph)SASIEGLMGR ddPTM_HeLa_CUDC101_4h_R1 1 AISSASIEGLMGR 13 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;C9JQE8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 AIS(0.931)S(0.053)AS(0.016)IEGLMGR 124.48 0.0001066 0 581.59 574.27 483.76 519.04 670.13 664.39 429.05 609 680.53 636.26 TRUE FALSE FALSE 513.4169018 591.962578 509.9135289 540.2086947 620.695845 651.7178677 445.5986022 678.3260983 652.4782654 632.4754972 0.811757774 0.935945472 0.80621863 0.854117981 0.981375322 1.030423899 0.704531012 1.072493877 1.031626155 1 9.304865779 -3.908410768 19.65146246 0.902170658 11.81642519 0.185026924 0.104376284 472.6682799 101193.1359 0.013804101 505.6715857 0.000123478 3.908410768 10.91425454 TVIIEQSWGS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 TVIIEQSWGSPK 12 0 P10809;E7EXB4;E7ESH4;C9JL25;P10809-2;C9JL19;C9JCQ4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 1 0 TVIIEQS(0.207)WGS(0.793)PK 169.17 1.04E-06 399700000 4427.1 4833.6 4229.8 4770.8 4414.1 4468.8 3810.8 4013.1 4375.9 4462.8 TRUE FALSE FALSE 3908.162049 4982.517487 4458.475782 4965.373845 4088.480637 4383.565086 3957.783833 4469.935082 4195.52355 4436.255067 0.880959726 1.123135936 1.00500889 1.119271496 0.921606304 0.988122869 0.892145238 1.007591993 0.94573542 1 12.1151266 -3.907545101 19.76119631 0.968742416 3.618166443 0 0.080924856 1982.659169 405870.6772 0.011770458 9948.541072 0.000123724 3.907545101 2.649424027 QEEAEEQGAGS(ph)PGQPAHLAR ddPTM_HeLa_CUDC101_4h_R1 2 QEEAEEQGAGSPGQPAHLAR 20 0 Q96S99 Q96S99 PLEKHF1 Pleckstrin homology domain-containing family F member 1 1 0 QEEAEEQGAGS(1)PGQPAHLAR;QEEAEEQGAGS(1)PGQPAHLAR ; 184.53 6.67E-12 27976000 5619.1 4346.4 5144 5109.1 4608.4 5082.4 4417.1 4456.3 5308.1 4785.1 TRUE FALSE FALSE 4960.437616 4480.307432 5422.1002 5317.471181 4268.447513 4985.461688 4587.469027 4963.587179 5089.297871 4756.638012 1.042845304 0.941906326 1.139901793 1.117905371 0.897366481 1.048106178 0.964435178 1.043507445 1.069935921 1 12.21572652 -3.907245896 19.29180717 1.020213034 2.477939243 0.002587004 0.072370406 1637.787408 388869.8832 0.009012412 14774.95278 0.00012381 3.907245896 1.457726209 NSTLPMEETSPCS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 1 NSTLPMEETSPCSSR 15 0 Q9BYW2;H7C3H4;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 NSTLPMEET(0.177)S(0.101)PCS(0.552)S(0.17)R 84.41 0.016011 7452300 2746.7 2500.4 2467 2599.4 2512 1929.6 2186.9 1162.4 3280.6 2002.7 TRUE FALSE FALSE 2424.73599 2577.43436 2600.373482 2705.414768 2326.694765 1892.796095 2271.249466 1294.722917 3145.372279 1990.787851 1.217978092 1.294680575 1.30620321 1.358966886 1.168730643 0.950777399 1.14087971 0.650357052 1.579963569 1 10.95912377 -3.907168751 1.521840031 1.151134983 7.51E-19 0.416547082 0.18520819 1.997946184 2.086827519 0.022097436 4.479143035 0.000123832 3.907168751 -1.151134983 SPTS(ph)PLNMK ddPTM_HeLa_CUDC101_4h_R1 1 SPTSPLNMK 9 0 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 A0A0A0MRP6 SMARCA1 Probable global transcription activator SNF2L1 1 0 S(0.381)PT(0.141)S(0.478)PLNMK 88.134 0.031305 32431000 7352.6 6106 5676.3 5942.4 6306.4 5762.2 4994.8 2952.3 5737.1 6170.7 TRUE FALSE FALSE 6490.739374 6294.118623 5983.177948 6184.756757 5841.189436 5652.295635 5187.451109 3288.377898 5500.61431 6133.996402 1.058158328 1.026104062 0.975412693 1.00827525 0.952264894 0.921470321 0.845688646 0.536090614 0.896742344 1 12.58261161 -3.906573298 0.897321686 1.021857291 3.00E-19 0.884666204 0.048274665 0.528098842 0.206728274 0.005041874 0.613341992 0.000124001 3.906573298 -1.021857291 SDTPDVNIYYTLDGSKPEFLKRIGYGENNT(ph)FK ddPTM_HeLa_CUDC101_4h_R1 1 SDTPDVNIYYTLDGSKPEFLKRIGYGENNTFK 32 3 V9GY46;A0A087WTH2;Q9NVP4-3;Q9NVP4-5;Q9NVP4 V9GY46 DZANK1 Double zinc ribbon and ankyrin repeat-containing protein 1 1 0 SDTPDVNIY(0.001)Y(0.001)T(0.001)LDGS(0.003)KPEFLKRIGY(0.063)GENNT(0.93)FK 40.454 0.034431 8248400 1624.9 1133.3 1080.1 1231.4 1364.4 983.82 1038.9 1084.8 1254.3 925.12 TRUE FALSE FALSE 1434.431685 1168.21563 1138.493473 1281.621815 1263.75093 965.0552727 1078.970721 1208.289247 1202.597223 919.6173451 1.559813647 1.270327964 1.238007829 1.393646848 1.374213891 1.049409603 1.173282264 1.313904369 1.307714812 1 9.844889867 -3.906470661 18.03159936 1.264291978 3.725308367 0.009460445 0.155906655 1408.062003 276543.8556 0.029355047 2638.918745 0.000124031 3.906470661 2.46101639 S(ph)PTSPLNMK ddPTM_HeLa_CUDC101_4h_R1 1 SPTSPLNMK 9 0 A0A0A0MRP6;B7ZLQ5;P28370-2;P28370 A0A0A0MRP6 SMARCA1 Probable global transcription activator SNF2L1 1 0 S(0.614)PT(0.19)S(0.196)PLNMK 82.029 0.039913 29532000 7994.2 6426.3 6004 5878.7 6055.8 5313.5 4771.6 2957 6006 6268.7 TRUE FALSE FALSE 7057.131994 6624.286686 6328.594401 6118.458796 5609.075699 5212.15384 4955.64221 3293.612927 5758.430138 6231.413494 1.132509021 1.063047203 1.015595323 0.981873343 0.900128952 0.83643203 0.795267754 0.528549892 0.924096939 1 12.60534374 -3.904878586 0.549779798 1.064038843 2.06E-18 0.854309002 0.0616795 1.196755089 0.186058948 0.011373518 0.886536846 0.000124486 3.904878586 -1.064038843 MVVFGSYS(ph)IDLK ddPTM_HeLa_CUDC101_4h_R1 1 MVVFGSYSIDLK 12 0 E9PG59 E9PG59 INPP4B 1 0 MVVFGS(0.238)Y(0.16)S(0.602)IDLK 89.698 0.021892 18692000 1399 1113.4 1316 1093.9 1040.1 1042 851.95 1081.1 1042.5 889.65 TRUE FALSE FALSE 1235.011341 1147.702534 1387.146941 1138.51397 963.3738952 1022.125586 884.8099969 1204.168054 999.5277088 884.3583222 1.39650559 1.29777999 1.568534954 1.287389898 1.089347916 1.155782176 1.000510737 1.361629131 1.130229324 1 9.788487226 -3.904583574 19.16482228 1.211227583 11.49959779 0.06338114 0.169940213 847.3314388 170343.765 0.027668048 340.9171769 0.000124571 3.904583574 10.2883702 LLEAISS(ph)LDGK ddPTM_HeLa_CUDC101_4h_R1 1 LLEAISSLDGK 11 0 Q9BVJ6-3;Q9BVJ6 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 0 LLEAIS(0.232)S(0.768)LDGK 141.58 0.0013285 10632000 2852 2831.2 2384.1 2130.9 3249.6 2875.6 1968.7 1053.4 3020.8 3429.7 TRUE FALSE FALSE 2517.692883 2918.425916 2512.991658 2217.807313 3009.883482 2820.752721 2044.633418 1173.314798 2896.281345 3409.299992 0.738477954 0.856019102 0.737099013 0.650516915 0.882845009 0.827370055 0.599722355 0.344151234 0.849523759 1 11.73525984 -3.903514971 0.101861471 1.158966571 6.78E-25 0.487142188 0.125017621 37.73801868 0.561890144 1.397969209 6.570048326 0.000124878 3.903514971 -1.158966571 VEPEVLSTDTQT(ph)SPEPGTR ddPTM_HeLa_CUDC101_4h_R1 1 VEPEVLSTDTQTSPEPGTR 19 0 P29375;P29375-2 P29375 KDM5A Lysine-specific demethylase 5A 1 0 VEPEVLSTDT(0.007)QT(0.496)S(0.496)PEPGT(0.001)R 170.79 8.64E-07 8539600 4454.3 3908.8 3669.8 3359.1 3495.3 3471.6 3178.2 1788.6 3020.6 3302.4 TRUE FALSE FALSE 3932.173706 4029.225495 3868.200489 3496.098617 3237.458683 3405.385014 3300.784239 1992.206994 2896.089589 3282.757178 1.19782655 1.227390659 1.178338902 1.064988492 0.986201083 1.037355135 1.005491439 0.606870044 0.882212553 1 11.68069232 -3.90328421 1.224162489 1.103530553 1.70E-20 0.634567467 0.103550736 1.385012308 0.965423575 0.014612164 2.384701874 0.000124944 3.90328421 -1.103530553 SECDS(ph)SPEPK ddPTM_HeLa_CUDC101_4h_R1 1 SECDSSPEPK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SECDS(0.5)S(0.5)PEPK 87.789 0.031827 67987000 5732.3 3243.1 5445.9 5080.1 4314.6 3660.4 4224.5 1878.8 5338.7 5198.3 TRUE FALSE FALSE 5060.368484 3343.016067 5740.321827 5287.288436 3996.320554 3590.583969 4387.44038 2092.674998 5118.636526 5167.38028 0.9792909 0.646946012 1.110876598 1.023204825 0.77337458 0.694855763 0.849064737 0.404977935 0.990567028 1 12.33521734 -3.903223546 0.540924736 0.979573343 7.96E-13 0.532369073 0.141171418 3.014007083 0.454273808 0.026325463 2.023202504 0.000124962 3.903223546 -0.979573343 ASESS(ph)SEEKDDYEIFVK ddPTM_HeLa_CUDC101_4h_R1 2 ASESSSEEKDDYEIFVK 17 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;H7C1M2 P18583-10 SON Protein SON 1 0 AS(0.004)ES(0.289)S(0.353)S(0.353)EEKDDYEIFVK;AS(0.016)ES(0.205)S(0.616)S(0.151)EEKDDY(0.012)EIFVK ; 67.648 0.016564 89545000 4663.4 3851.2 3834.9 3422.1 3966 3465.4 3078.9 2432.7 3863.3 4082 TRUE FALSE FALSE 4116.763321 3969.850907 4042.226294 3561.66803 3673.436081 3399.303269 3197.654204 2709.628735 3704.053139 4057.720082 1.014550841 0.978345186 0.996181652 0.877751042 0.905295586 0.837737251 0.788042088 0.667771231 0.912840971 1 11.98645363 -3.903097572 0.43186682 1.011910161 0.316532422 0.86144606 0.038949742 0.878804606 0.08864886 0.005724256 0.334254952 0.000124998 3.903097572 -0.695377739 SYSEDDIHR ddPTM_HeLa_CUDC101_4h_R1 2 SYSEDDIHR 9 0 A0A087X0Q1;Q7Z739;A0A024R7W5;A0A087WY31;Q9Y5A9-2;Q9BYJ9;Q9Y5A9 A0A087X0Q1;Q9Y5A9 YTHDF3;YTHDF2;YTHDF1 YTH domain-containing family protein 3;YTH domain-containing family protein 2;YTH domain-containing family protein 1 0 0 ; ; 196.79 3.82E-16 49131000 9043.9 7652.7 8699.7 7923.2 8951.5 9417.6 8568.5 8458.5 9018.7 9136.1 FALSE FALSE TRUE 7983.787752 7888.470616 9170.032097 8246.342343 8291.165679 9237.974971 8898.989915 9421.38145 8646.945369 9081.758071 0.879101567 0.868606117 1.009719927 0.908011673 0.912947208 1.017201174 0.979875245 1.037396215 0.952122409 1 13.14875589 -5.25395955 24.46127831 0.936692706 1.008329321 0.383233951 0.045443446 464.1067654 1517760.39 0.007956849 0.019844058 5.57E-06 5.25395955 0.071636615 AES(ph)PEEVACR ddPTM_HeLa_CUDC101_4h_R1 2 AESPEEVACR 10 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 AES(1)PEEVACR;AES(1)PEEVACR ; 160.91 5.91E-05 254760000 4970.4 3462.8 3787.6 3856.8 4497.5 3587.8 3522.7 3621.2 4227.1 3452.9 TRUE FALSE FALSE 4387.777247 3569.484764 3992.369113 4014.096975 4165.728385 3519.368693 3658.571719 4033.422771 4052.857149 3432.361997 1.278355037 1.039949972 1.163155027 1.169485322 1.213662309 1.025348928 1.065904972 1.175115787 1.180777888 1 11.744986 -3.902661485 17.37180929 1.127347263 3.52182292 0.027972058 0.086139832 547.6682282 98835.72997 0.014980753 575.4593068 0.000125123 3.902661485 2.394475657 SYSPYDMLESIR ddPTM_HeLa_CUDC101_4h_R1 1 SYSPYDMLESIR 12 0 P07355;P07355-2;H0YN42;A6NMY6;H0YN28;H0YM50;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 117.71 0.021142 13699000 760.25 721.71 504.71 564.4 555.71 669.9 650.33 592 620.66 606.68 FALSE FALSE TRUE 671.1346475 743.9450297 531.9961493 587.4186715 514.7163804 657.1227736 675.4134459 659.3908871 595.0761321 603.0714404 1.112860936 1.233593534 0.882144492 0.974044918 0.853491553 1.08962675 1.119955947 1.093387687 0.986742353 1 9.236185105 -13.52213083 0.002966402 0.5649327 1.507318475 0 0.111021308 2410296.661 579.4067932 95973.38564 88249.64296 3.01E-14 13.52213083 0.942385776 SYSPYDMLESIRK ddPTM_HeLa_CUDC101_4h_R1 2 SYSPYDMLESIRK 13 1 P07355;P07355-2;H0YN42;A6NMY6;H0YN28;H0YM50;H0YL33 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 110.31 0.0047712 26378000 4004.4 3589.4 2921.4 2927.4 4618.2 3654.3 3313.4 3986.9 2960.8 3517.4 FALSE FALSE TRUE 3535.010302 3699.98516 3079.339721 3046.792025 4277.524587 3584.600316 3441.198948 4440.75258 2838.754571 3496.478348 1.011020218 1.058203367 0.880697494 0.871388787 1.223380831 1.025203064 0.984189978 1.270064373 0.811889647 1 11.77168686 -4.25845372 24.61237554 1.006440465 1.270064493 0.360162804 0.110703373 162.311623 1337933.286 0.012137525 0.112674761 5.52E-05 4.25845372 0.263624028 GGVTGS(ph)PEAS(ph)ISGSKGDLK ddPTM_HeLa_CUDC101_4h_R1 1 GGVTGSPEASISGSKGDLK 19 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 GGVT(0.156)GS(0.843)PEAS(0.93)IS(0.059)GS(0.012)KGDLK 61.821 0.032932 29804000 4018 3305.6 2977.9 3064 3842 4177.7 3793 3168.3 3754.1 3863.7 TRUE FALSE FALSE 3547.016131 3407.441618 3138.894282 3188.963164 3558.583314 4098.017333 3939.297281 3528.966465 3599.354409 3840.718541 0.923529307 0.887188577 0.817267459 0.830303791 0.92654103 1.066992358 1.025666744 0.918829752 0.937156517 1 11.90716053 -3.902402856 15.39515658 0.947712857 0.000274287 0 0.076581303 5676042.769 10438722.16 0.011871191 182667005.1 0.000125198 3.902402856 -0.94743857 VNSGDT(ph)EVGSSLLR ddPTM_HeLa_CUDC101_4h_R1 1 VNSGDTEVGSSLLR 14 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 VNS(0.123)GDT(0.83)EVGS(0.047)SLLR 196.45 9.64E-16 107370000 1332.1 1452.2 1148.2 1126.5 1237.3 1007 1057.6 594.83 717.47 934.33 TRUE FALSE FALSE 1175.953257 1496.940561 1210.275165 1172.443539 1146.026844 987.7931528 1098.391986 662.5430428 687.8955829 928.7725636 1.266136946 1.61174072 1.303090996 1.262358068 1.23391548 1.06354687 1.182627512 0.713353375 0.740650198 1 9.859181545 -3.902269665 1.77671809 1.191343335 5.77E-10 0.299118399 0.214679053 2.647250258 3.577597314 0.027791885 7.260660926 0.000125236 3.902269665 -1.191343334 SYSSGGEDGYVR ddPTM_HeLa_CUDC101_4h_R1 1 SYSSGGEDGYVR 12 0 Q13347 Q13347 EIF3I Eukaryotic translation initiation factor 3 subunit I 0 0 232.88 4.72E-42 10234000 1316.2 1442.9 1123.3 1385.1 1243 1390.7 1071.2 1268 1346.8 1132.5 FALSE FALSE TRUE 1161.917031 1487.354039 1184.028996 1441.590365 1151.306366 1364.174715 1112.516543 1412.343995 1291.284334 1125.76384 1.032114366 1.321195429 1.051756109 1.280544208 1.022689063 1.211776988 0.988232615 1.254565074 1.1470295 1 10.1366885 -7.488544925 24.18642977 1.014167995 1.153592419 0.105736647 0.114232896 258.0121447 181758.4033 0.016197654 0.017931925 3.25E-08 7.488544925 0.139424425 DALQDS(ph)LAR ddPTM_HeLa_CUDC101_4h_R1 2 DALQDSLAR 9 0 Q96A99-2;Q96A99 Q96A99-2 PTX4 Pentraxin-4 1 0 DALQDS(1)LAR;DALQDS(1)LAR ; 100.02 0.017726 23081800 3927.9 3009.3 3758.1 3605.4 3606.8 3518.5 2856.3 3086 3661 3226.6 TRUE FALSE FALSE 3467.477516 3102.012966 3961.274254 3752.443796 3340.73355 3451.390475 2966.468448 3437.297766 3510.09203 3207.40804 1.081084001 0.967140111 1.235039073 1.169930283 1.041567991 1.076068412 0.924880281 1.071674612 1.094370279 1 11.64719219 -3.902194945 20.7592007 1.051446637 3.241141946 0 0.087716919 4368.384451 1374852.76 0.012528984 218713.4983 0.000125258 3.902194945 2.189695309 TVSGPGT(ph)PEPR ddPTM_HeLa_CUDC101_4h_R1 2 TVSGPGTPEPR 11 0 Q9H3U1 Q9H3U1 UNC45A Protein unc-45 homolog A 1 0 T(0.008)VSGPGT(0.992)PEPR;TVSGPGT(1)PEPR ; 127.52 0.012625 56180000 7269.8 6407.2 5856.7 6227.1 5692.1 6315.5 4710.4 3720 5914.2 6150 TRUE FALSE FALSE 6417.645064 6604.598238 6173.330918 6481.068054 5272.205123 6195.04236 4892.081706 4143.469763 5670.414173 6113.419526 1.049763563 1.080344349 1.00979998 1.060137952 0.862398712 1.01335142 0.800220185 0.677766305 0.927535588 1 12.57776386 -3.901468426 0.744881432 1.028383788 0.244066567 0.73632985 0.063691406 1.215131572 0.332399505 0.008580724 0.900297267 0.000125468 3.901468426 -0.784317221 KAPWIPPNPTS(ph)PPAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 KAPWIPPNPTSPPASPK 17 1 Q2KHM9-2;Q2KHM9 Q2KHM9-2 KIAA0753 Uncharacterized protein KIAA0753 2 0 KAPWIPPNPT(0.408)S(0.815)PPAS(0.777)PK 72.167 0.012014 26853000 1517.8 1723.8 1709.4 1611 1823.7 1462.5 1324.1 1417.7 2001.6 1636.6 TRUE FALSE FALSE 1339.885785 1776.908235 1801.815335 1676.703543 1689.169284 1434.605249 1375.170981 1579.085237 1919.093201 1626.86543 0.823599641 1.092228159 1.10753803 1.030634441 1.03829687 0.881821706 0.84528871 0.970630519 1.179626271 1 10.66787921 -3.901275706 19.97291895 0.94804284 3.090550685 0 0.12163695 4292.264426 1050457.812 0.01561914 87747.11761 0.000125523 3.901275706 2.142507845 SYVSEK(ac)DVTSAK ddPTM_HeLa_CUDC101_4h_R1 2 SYVSEKDVTSAK 12 1 P42704 P42704 LRPPRC "Leucine-rich PPR motif-containing protein, mitochondrial" 0 1 ; SYVSEK(1)DVTSAK;SYVSEK(1)DVTSAK 214.04 6.13E-16 1717490 1386.84 556.33 661.61 689.05 1396.14 1174.68 1193.8 900.24 1026 1135.19 FALSE TRUE FALSE 1224.276718 573.4698679 697.3786379 717.1524373 1293.149534 1152.274936 1239.845266 1002.719683 983.7078457 1128.437839 1.084930578 0.508198013 0.618003592 0.635526754 1.145964349 1.021123979 1.098727128 0.888590977 0.871743052 1 10.14011123 EPALPLEPDSGGNT(ph)SPGVTANGEAR ddPTM_HeLa_CUDC101_4h_R1 2 EPALPLEPDSGGNTSPGVTANGEAR 25 0 Q92974-2;Q92974;V9GYM8;A0A5F9ZI21;Q92974-3;Q5VY93 Q92974-2 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 EPALPLEPDSGGNT(0.666)S(0.334)PGVTANGEAR;EPALPLEPDSGGNT(0.911)S(0.089)PGVTANGEAR ; 168.26 9.92E-13 35848000 7643.3 7318 6018.7 6735.4 7814.3 7163.5 7205.6 6265.1 6836.2 7362.1 TRUE FALSE FALSE 6747.36396 7543.458906 6344.089128 7010.098725 7237.854657 7026.868173 7483.522406 6978.29366 6554.408943 7318.309902 0.921983908 1.030765164 0.866878994 0.957884924 0.989006308 0.960176361 1.022575227 0.953538966 0.895617845 1 12.83729479 -3.90095454 19.21408447 0.965458015 0.000121874 0 0.050838754 2504.94135 511316.4259 0.006330224 5517.547265 0.000125616 3.90095454 -0.965336141 ASS(ph)PAQCVTPVQTVV ddPTM_HeLa_CUDC101_4h_R1 1 ASSPAQCVTPVQTVV 15 0 Q13614;Q13614-2 Q13614 MTMR2 Myotubularin-related protein 2 1 0 AS(0.333)S(0.667)PAQCVTPVQTVV 101.61 0.0051543 61630000 3227.5 2441.3 2472.4 2528.4 2791 2337.2 1774.7 2234.8 2688.1 1921.9 TRUE FALSE FALSE 2849.177343 2516.513559 2606.065423 2631.519081 2585.11349 2292.621804 1843.150773 2489.200599 2577.29538 1910.468453 1.491350112 1.317223299 1.364097595 1.37742085 1.353130687 1.200031228 0.964763784 1.302926826 1.349038439 1 10.89971072 -3.898338811 20.67320027 1.249256441 8.095219483 0 0.160958916 5849.414077 1200686.427 0.028410716 17780.3686 0.000126375 3.898338811 6.845963042 AFQLEEGEET(ph)EPDCK ddPTM_HeLa_CUDC101_4h_R1 2 AFQLEEGEETEPDCK 15 0 P38432 P38432 COIL Coilin 1 0 AFQLEEGEET(1)EPDCK;AFQLEEGEET(1)EPDCK ; 226.79 3.72E-32 89664000 7061.1 4871.9 5634.5 5576.1 5727 7721 8966.4 11152.3 3814.5 4256.2 TRUE FALSE FALSE 6233.408562 5021.997464 5939.118113 5803.51746 5304.53062 7573.734789 9312.237052 12421.83275 3657.264695 4230.883933 1.473311171 1.186985402 1.403753496 1.371703302 1.253764155 1.790106963 2.201014539 2.935989961 0.864420947 1 12.04674339 -3.897580605 0.729806132 1.227237966 4.998996352 0.91120234 0.175118296 0.915234114 0.239921362 0.030739216 3.199167048 0.000126596 3.897580605 3.771758386 up AGLGSPERPPKT(ph)S(ph)PGSPR ddPTM_HeLa_CUDC101_4h_R1 1 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 0 AGLGS(0.042)PERPPKT(0.957)S(0.973)PGS(0.027)PR 66.738 0.030963 67348000 5910.3 5249.9 4803.1 4707 5279.3 5336.5 4969.1 6337.9 5904.2 4570 TRUE FALSE FALSE 5217.503593 5411.643196 5062.770115 4898.971805 4889.856557 5234.715154 5160.759852 7059.380917 5660.826377 4542.817437 1.148517119 1.191252625 1.114455992 1.078399446 1.076392927 1.15230586 1.136026249 1.553965356 1.246104748 1 12.14937161 -3.896862878 1.634422762 1.087072984 2.250814972 0.739039379 0.073095059 0.979937435 1.132602516 0.010149447 2.414690536 0.000126805 3.896862878 1.163741988 S(ph)LSPGGAALGYR ddPTM_HeLa_CUDC101_4h_R1 4 SLSPGGAALGYR 12 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 0 S(0.987)LS(0.013)PGGAALGYR;S(0.999)LS(0.001)PGGAALGYR;S(0.921)LS(0.079)PGGAALGYR;S(0.868)LS(0.132)PGGAALGYR ;;; 187.78 7.44E-11 1867450000 12039.1 10638.9 9532.3 10053.2 10882 10343.2 9264.7 9244.6 10016.8 9455.2 TRUE FALSE FALSE 10627.89495 10966.6719 10047.64497 10463.21295 10079.25654 10145.92069 9622.042582 10296.9679 9603.903264 9398.96005 1.130752221 1.166796309 1.06901667 1.113230921 1.072379975 1.07947269 1.02373481 1.09554332 1.021804882 1 13.19828542 -3.893259641 19.65562082 1.073348527 3.879054616 0.013812619 0.049166819 2363.311641 468393.93 0.008134709 22714.94607 0.000127862 3.893259641 2.805706088 ALSSGGSITSPPLS(ph)PALPK ddPTM_HeLa_CUDC101_4h_R1 1 ALSSGGSITSPPLSPALPK 19 0 I1E4Y6;Q6Y7W6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;E7ESB6;C9JW88;F8WCD5;C9JPV7;C9JXQ0;C9J0V6;C9JHT0;C9JRZ2 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 ALSSGGSITS(0.002)PPLS(0.998)PALPK 133.86 4.38E-05 15283000 2737.4 2428.1 1837 2095.8 2770.6 2455.3 2938.3 3811.7 2354.6 2090.4 TRUE FALSE FALSE 2416.526122 2502.906883 1936.313777 2181.275783 2566.218358 2408.469243 3051.631215 4245.608521 2257.542391 2077.966208 1.162928498 1.204498357 0.931831215 1.049716677 1.234966357 1.159051208 1.468566334 2.043155709 1.086419203 1 11.02095648 -3.893249434 1.047910257 1.07939651 3.309311217 0.923594896 0.083981709 0.699261638 0.359576284 0.014235122 2.087409013 0.000127865 3.893249434 2.229914707 up NNTAAETEDDES(ph)DGEDRGGGT(ph)SGVR ddPTM_HeLa_CUDC101_4h_R1 1 NNTAAETEDDESDGEDRGGGTSGVR 25 1 A0A590UJS4;Q6KC79-2 A0A590UJS4 NIPBL Nipped-B-like protein 2 0 NNTAAET(0.01)EDDES(0.992)DGEDRGGGT(0.525)S(0.473)GVR 59.219 0.0089313 36071000 3295.3 1790.3 1965.8 2293.5 2942.2 2781.8 3042.2 2332.5 2675.8 2914.3 TRUE FALSE FALSE 2909.029929 1845.457021 2072.077094 2387.038843 2725.159768 2728.7418 3159.538673 2598.022372 2565.502391 2896.965614 1.004164466 0.637031041 0.715257746 0.823979005 0.940694551 0.941931028 1.090637272 0.89680815 0.885582618 1 11.50032685 -3.892490152 11.84172817 0.944675494 0.000107431 0 0.139019853 1867020.159 4182519.26 0.021445082 44722764.21 0.000128088 3.892490152 -0.944568063 GALPPS(ph)PALPRPSR ddPTM_HeLa_CUDC101_4h_R1 3 GALPPSPALPRPSR 14 1 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 GALPPS(1)PALPRPSR;GALPPS(0.999)PALPRPS(0.001)R;GALPPS(1)PALPRPSR ;; 108.66 0.0021906 102638000 5602 4705.5 4750 4493.5 4872.6 5723.4 5273.1 6357.6 5239 5140.4 TRUE FALSE FALSE 4945.342052 4850.470878 5006.799368 4676.764353 4513.158006 5614.235681 5476.485233 7081.323486 5023.046203 5109.824672 0.967810516 0.949244091 0.979837801 0.915249476 0.88323148 1.098713956 1.071755996 1.385825139 0.983017329 1 12.31905808 -3.892247714 1.212158845 0.972369871 1.939203296 0.87000378 0.04882376 0.824531592 0.553595966 0.007297527 1.23987834 0.00012816 3.892247714 0.966833425 LLS(ph)NMEAQHNDLEFK ddPTM_HeLa_CUDC101_4h_R1 1 LLSNMEAQHNDLEFK 15 0 Q13439-3;Q13439-4;Q13439;Q13439-5;H0Y6I0 Q13439-3 GOLGA4 Golgin subfamily A member 4 1 0 LLS(1)NMEAQHNDLEFK 78.401 0.023499 82274000 827.03 914.4 602.92 669.06 1012.6 1046.9 744.13 776.1 884.14 958.02 TRUE FALSE FALSE 730.0867971 942.5715802 635.5156789 696.3471587 937.9025154 1026.932127 772.8313434 864.4480869 847.695375 952.3216544 0.76663887 0.989761785 0.667333013 0.731210044 0.984858961 1.078345874 0.811523438 0.907727009 0.890135566 1 9.895305128 -3.892143431 17.80026222 0.883215471 2.946307738 0.003684523 0.127234681 1833.927183 316187.6982 0.018876358 6845.876907 0.000128191 3.892143431 2.063092267 ETPHS(ph)PGVEDAPIAK ddPTM_HeLa_CUDC101_4h_R1 6 ETPHSPGVEDAPIAK 15 0 Q9UHB6-4;Q9UHB6-5;Q9UHB6;F8VQE1;Q9UHB6-2;F8VS07;Q9UHB6-3 Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 1 0 ET(0.298)PHS(0.702)PGVEDAPIAK;ET(0.001)PHS(0.999)PGVEDAPIAK;ET(0.006)PHS(0.994)PGVEDAPIAK;ET(0.001)PHS(0.999)PGVEDAPIAK;ET(0.001)PHS(0.999)PGVEDAPIAK;ET(0.006)PHS(0.994)PGVEDAPIAK ;;;;; 139.12 0.00029778 2839071700 48575.1 42286.1 41668 39905.6 44638.3 44183.7 42312.7 45362.8 44480.3 41018.2 TRUE FALSE FALSE 42881.20041 43588.88462 43920.69812 41533.12285 41345.42154 43340.96954 43944.71501 50526.71779 42646.80321 40774.22192 1.051674278 1.069030445 1.077168271 1.018612273 1.014008842 1.062950254 1.077757292 1.239182881 1.045925617 1 15.31536973 -3.891975474 1.352357241 1.031653478 1.53223439 0.846414307 0.024843277 0.970063882 0.79388869 0.004416648 0.846116444 0.00012824 3.891975474 0.500580912 KAS(ph)PEAASTPRDPIDVDLDVSNTTTAQK ddPTM_HeLa_CUDC101_4h_R1 1 KASPEAASTPRDPIDVDLDVSNTTTAQK 28 2 P29590-11;P29590-12;P29590-13;H3BT57;H3BUJ5 P29590-11 PML Protein PML 1 0 KAS(0.739)PEAAS(0.131)T(0.131)PRDPIDVDLDVSNTTTAQK 96.793 5.03E-09 38605000 2199.2 2306 1987.3 2067.6 2050.7 1984.4 1675.7 1958 2172.1 1921.4 TRUE FALSE FALSE 1941.41311 2377.045127 2094.739449 2151.925665 1899.423947 1946.550876 1740.33231 2180.890805 2082.565119 1909.971427 1.01646186 1.244544862 1.096738631 1.126679506 0.994477676 1.01915183 0.91118238 1.141844728 1.090364541 1 10.89933534 -3.891785408 18.20552218 1.032407325 11.35847938 0.023533608 0.088882777 348.0619659 58753.01358 0.012285373 500.3241697 0.000128296 3.891785408 10.32607206 S(ph)GDETPGSEVPGDKAAEEQGDDQDSEK ddPTM_HeLa_CUDC101_4h_R1 1 SGDETPGSEVPGDKAAEEQGDDQDSEK 27 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 S(0.644)GDET(0.319)PGS(0.037)EVPGDKAAEEQGDDQDSEK 77.573 4.50E-05 121100000 2324.9 2238.4 1854.7 1776.7 2105.4 1758.9 1965.9 1106.1 2238.2 1950.6 TRUE FALSE FALSE 2052.378746 2307.362451 1954.970692 1849.161506 1950.088837 1725.351913 2041.725422 1232.013953 2145.940449 1938.997744 1.058474025 1.189976862 1.008237734 0.953668724 1.005720013 0.889816359 1.052979782 0.635386996 1.106726635 1 10.92109541 -3.891723985 1.962241223 1.025571932 4.48E-14 0.676285511 0.080474585 1.401788413 2.159281121 0.01091419 3.726159151 0.000128315 3.891723985 -1.025571932 (ac)AQQT(ph)SPDTLTVPEVDNPHCPNPWLNEDLVK ddPTM_HeLa_CUDC101_4h_R1 1 AQQTSPDTLTVPEVDNPHCPNPWLNEDLVK 30 0 Q08499-6;Q08499-12;Q08499-7 Q08499-6 PDE4D "cAMP-specific 3,5-cyclic phosphodiesterase 4D" 1 0 AQQT(0.31)S(0.31)PDT(0.31)LT(0.069)VPEVDNPHCPNPWLNEDLVK 66.925 2.03E-05 6095800 892.81 611.83 649.11 592.63 906.51 946.34 667.04 700.49 798.77 783.73 TRUE FALSE FALSE 788.1561652 630.6797571 684.2028501 616.800013 839.6385633 928.2901412 692.7679562 780.2309501 765.8443625 779.0683391 1.011664992 0.809530725 0.878232134 0.791714901 1.077746998 1.191538784 0.889226171 1.001492309 0.983025909 1 9.605606075 -3.891721532 18.47061626 0.980055186 3.145628447 0 0.117831788 2842.260897 476628.6698 0.016350306 4392.997418 0.000128315 3.891721532 2.165573261 QVSS(ph)PSFTNR ddPTM_HeLa_CUDC101_4h_R1 2 QVSSPSFTNR 10 0 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 QVS(0.078)S(0.899)PS(0.023)FTNR;QVS(0.077)S(0.921)PS(0.002)FTNR ; 179.6 3.97E-08 59409000 10263.1 8992 8853.4 8890.8 9084.5 7970.5 6895.8 4377.4 8138 9635.1 TRUE FALSE FALSE 9060.074976 9269.032862 9332.041584 9253.405253 8414.354534 7818.475992 7161.773316 4875.705522 7802.548196 9577.789997 0.945946296 0.967763217 0.974341846 0.966131567 0.878527775 0.816313157 0.747748 0.509063732 0.814650164 1 13.22547709 -3.890346488 0.673510498 0.976057347 1.19E-23 0.84805428 0.055532906 0.520975888 0.116626419 0.004429055 0.43578337 0.000128722 3.890346488 -0.976057347 ECDS(ph)DDNMGAK ddPTM_HeLa_CUDC101_4h_R1 2 ECDSDDNMGAK 11 0 Q9Y4E5-2;Q9Y4E5 Q9Y4E5-2 ZNF451 Zinc finger protein 451 1 0 ECDS(1)DDNMGAK;ECDS(1)DDNMGAK ; 183.89 1.16E-10 12014200 4269.4 2786.4 3002.7 3160.4 2225.54 2588 2388.7 1324.5 3009.6 1671.24 TRUE FALSE FALSE 3768.947404 2872.245681 3165.035045 3289.294772 2061.366348 2538.638212 2480.832959 1475.275726 2885.543014 1661.29939 2.268674404 1.728915148 1.905156327 1.979953037 1.240815689 1.528103981 1.493308776 0.888025202 1.736919324 1 10.69809638 -3.890133897 1.069737561 1.652357262 2.12E-09 0.326612403 0.341034303 5.016565919 2.667449396 0.074989448 11.35205283 0.000128785 3.890133897 -1.65235726 FAQSAPGS(ph)PLSSQPVLITVQR ddPTM_HeLa_CUDC101_4h_R1 1 FAQSAPGSPLSSQPVLITVQR 21 0 Q01167-2;Q01167 Q01167-2 FOXK2 Forkhead box protein K2 1 0 FAQS(0.001)APGS(0.999)PLSSQPVLITVQR 265.09 6.64E-73 74355000 4409.2 3854 3289.3 3488.2 4090.5 3198.2 3172.9 2326.8 3843.4 3446.6 TRUE FALSE FALSE 3892.36026 3972.737172 3467.129508 3630.463873 3788.751964 3137.199664 3295.279816 2591.673507 3684.973425 3426.09947 1.13609085 1.159551031 1.011975729 1.059649291 1.105849961 0.91567676 0.961816738 0.756450164 1.075559381 1 11.74235132 -3.889875022 0.812963301 1.071630784 0.396567592 0.739265046 0.058027443 1.842466444 0.586857528 0.010988262 1.288753727 0.000128862 3.889875022 -0.675063192 RVS(ph)LTQR ddPTM_HeLa_CUDC101_4h_R1 1 RVSLTQR 7 1 Q96I34 Q96I34 PPP1R16A Protein phosphatase 1 regulatory subunit 16A 1 0 RVS(0.975)LT(0.025)QR 74.376 0.029239 3343100 1145.4 827.61 960.16 977.89 978.63 869.39 678.45 615.82 798.91 1237.5 TRUE FALSE FALSE 1011.137948 853.1076831 1012.069154 1017.772581 906.4384146 852.8078343 704.6180438 685.9224596 765.9785917 1230.139295 0.821970286 0.693504944 0.822727278 0.827363686 0.736858353 0.693261192 0.57279533 0.557597389 0.622676306 1 10.26460597 -3.889174232 0.11177287 1.162044543 3.20E-14 0.0473371 0.126465345 13.5891005 0.22235418 0.466154495 2.523714328 0.00012907 3.889174232 -1.162044543 SAESPTS(ph)PVTSETGSTFKK ddPTM_HeLa_CUDC101_4h_R1 2 SAESPTSPVTSETGSTFKK 19 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 SAES(0.014)PT(0.422)S(0.563)PVT(0.001)SETGSTFKK;SAES(0.004)PT(0.251)S(0.744)PVT(0.001)SETGSTFKK ; 116.04 6.97E-05 96516000 4084.2 3505.9 3674.6 3262.6 4616.7 4069.9 4439.1 9093 3782.1 3310.9 TRUE FALSE FALSE 3605.456267 3613.912623 3873.259991 3395.66293 4276.135239 3992.273438 4610.317574 10128.11036 3626.200237 3291.20662 1.095481592 1.098050971 1.176851058 1.031737998 1.299260646 1.213012096 1.400798585 3.077324378 1.101784438 1 11.68440089 -3.888670912 1.518087772 1.076323107 6.072448574 0.973490162 0.095650898 0.341051362 0.340159888 0.014904083 3.360110941 0.00012922 3.888670912 4.996125467 up S(ph)FQGDDSDLLLK ddPTM_HeLa_CUDC101_4h_R1 4 SFQGDDSDLLLK 12 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 S(1)FQGDDSDLLLK;S(0.999)FQGDDS(0.001)DLLLK;S(1)FQGDDSDLLLK;S(1)FQGDDSDLLLK ;;; 196.18 3.84E-16 59288500 9595.9 8178.8 7300.71 7822.66 10156.4 8364 9028.6 7696.88 8132.88 8941.8 TRUE FALSE FALSE 8471.083148 8430.779134 7695.408466 8141.701887 9407.182606 8204.470635 9376.836126 8573.061707 7797.639244 8888.613776 0.953026351 0.948492009 0.865760248 0.915969812 1.058340799 0.923031514 1.054926714 0.964499294 0.877261566 1 13.11774273 -3.88826255 13.88108495 0.970726481 0.743513714 0 0.06438731 3995041.789 5628629.804 0.007834279 27899590.95 0.000129341 3.88826255 -0.227212767 TT(ph)KTPEDGDYSYEIIEK ddPTM_HeLa_CUDC101_4h_R1 1 TTKTPEDGDYSYEIIEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.33)T(0.394)KT(0.277)PEDGDYSYEIIEK 97.488 0.0047307 74344000 4866.8 4242.4 4607.1 4431.9 4774.2 4428.3 3747.1 2508.2 5177 4874.4 TRUE FALSE FALSE 4296.321082 4373.103316 4856.173762 4612.652038 4422.016778 4343.837556 3891.626902 2793.72335 4963.601869 4845.406852 0.88667912 0.902525515 1.002222086 0.951963825 0.912620325 0.896485618 0.803157923 0.57657147 1.024393208 1 12.24240209 -3.886777788 1.041691645 0.946059627 0.087549574 0.880245349 0.042773248 0.940539543 0.473750747 0.007212495 1.078076954 0.000129784 3.886777788 -0.858510054 AEGSSTASSGS(ph)QLAEGK ddPTM_HeLa_CUDC101_4h_R1 1 AEGSSTASSGSQLAEGK 17 0 Q9NZB2-4;Q9NZB2;Q9NZB2-6;A0A0C4DH52;Q9NZB2-2;Q9NZB2-5 Q9NZB2-4 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 1 0 AEGSST(0.001)AS(0.153)S(0.257)GS(0.588)QLAEGK 240.66 5.95E-44 10989000 2247.7 1659.4 1601.5 1680.4 2034.6 1894.7 1834.5 1970.2 1515.6 1748 TRUE FALSE FALSE 1984.228013 1710.524147 1688.081934 1748.933975 1884.511611 1858.561754 1905.25728 2194.479604 1453.126327 1737.602818 1.141934159 0.984416075 0.971500458 1.006521143 1.08454682 1.069612534 1.096486067 1.262935109 0.836282211 1 10.76288263 -3.886549876 1.389069101 1.051547773 1.570282001 0.394675363 0.08446226 2.105834886 1.788219158 0.009658391 1.965083487 0.000129852 3.886549876 0.518734227 VEPSSQS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 2 VEPSSQSPGR 10 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EKH8;K7EIZ7 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 VEPS(0.001)S(0.002)QS(0.997)PGR;VEPSSQS(0.999)PGR ; 92.792 0.024287 146258000 3457.5 2807.4 3438.8 3264 2784.9 2941.9 3041.2 1718.14 2915.5 3310.6 TRUE FALSE FALSE 3052.217091 2893.892666 3624.71193 3397.120028 2579.463475 2885.788159 3158.500103 1913.726113 2795.321856 3290.908404 0.927469475 0.879359834 1.101432032 1.032274257 0.783815032 0.876897137 0.959765425 0.581519106 0.849407371 1 11.68427016 -3.885918179 1.735344692 0.957767747 1.38E-26 0.546024566 0.093078755 1.628429209 2.024835953 0.012612903 3.556641743 0.000130041 3.885918179 -0.957767747 EAAFS(ph)PGQQDWSR ddPTM_HeLa_CUDC101_4h_R1 2 EAAFSPGQQDWSR 13 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 EAAFS(1)PGQQDWSR;EAAFS(1)PGQQDWSR ; 199.33 1.33E-16 55609000 5698.2 5209 5221.1 4680.2 5302.7 4312.2 4098.6 2404.7 5689 5240.1 TRUE FALSE FALSE 5030.265634 5369.483116 5503.368459 4871.078786 4911.530385 4229.95197 4256.684375 2678.441328 5454.497012 5208.931652 0.965700065 1.03082234 1.056525373 0.935139701 0.942905516 0.812057491 0.817189524 0.514201665 1.047143133 1 12.34677179 -3.884739706 0.759550731 0.99128174 6.30E-16 0.911669817 0.046292226 0.80638499 0.224835251 0.006933714 0.774818095 0.000130395 3.884739706 -0.99128174 YGGDEIPFS(ph)PYR ddPTM_HeLa_CUDC101_4h_R1 2 YGGDEIPFSPYR 12 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 1 0 YGGDEIPFS(1)PYR;YGGDEIPFS(1)PYR ; 181.67 1.57E-10 69090000 8049.9 7075.2 6531.4 6115.1 7356.8 7449.9 6961.5 7584.4 7246.2 6956.6 TRUE FALSE FALSE 7106.302925 7293.178526 6884.50724 6364.50021 6814.103521 7307.80557 7230.007387 8447.777439 6947.508569 6915.221834 1.027631954 1.054655758 0.995558408 0.920360961 0.98537743 1.056770953 1.045520673 1.221620599 1.004668937 1 12.75555982 -3.881687262 1.394466207 1.007760935 1.535388536 0.765874988 0.035889101 1.219331398 1.032181789 0.005557743 1.166230444 0.000131315 3.881687262 0.527627602 SDKS(ph)PDLAPTPAPQS(ph)TPR ddPTM_HeLa_CUDC101_4h_R1 2 SDKSPDLAPTPAPQSTPR 18 1 F8WAE5;Q9BY44-2;Q9BY44-4;Q9BY44-3;Q9BY44 F8WAE5 EIF2A "Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed" 2 0 S(0.036)DKS(0.964)PDLAPTPAPQS(0.685)T(0.314)PR;S(0.135)DKS(0.865)PDLAPT(0.004)PAPQS(0.554)T(0.442)PR ; 133.53 7.71E-05 40655000 11250.3 9431.2 9465.6 9811.7 10106.2 9261.7 7883.5 4959.7 9889.8 10138.6 TRUE FALSE FALSE 9931.556888 9721.764093 9977.338968 10211.86354 9360.68576 9085.048504 8187.569236 5524.2922 9482.138258 10078.29516 0.98544017 0.964623872 0.989982811 1.013253073 0.928796549 0.901446957 0.812396254 0.548137568 0.940847446 1 13.29896399 -3.880725734 0.906933071 0.991117642 7.19E-24 0.964773046 0.024875599 0.342367406 0.132299897 0.00295046 0.394407853 0.000131606 3.880725734 -0.991117642 EIESS(ph)PQYR ddPTM_HeLa_CUDC101_4h_R1 3 EIESSPQYR 9 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BSK9;Q8WWM7-7;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 1 0 EIES(0.111)S(0.889)PQYR;EIES(0.143)S(0.857)PQYR;EIES(0.397)S(0.603)PQYR ;; 126.03 0.0042469 395338000 15918.1 14020.1 13632.7 12571 14538.5 12255.3 11531.9 6543.9 13740.7 14190.9 TRUE FALSE FALSE 14052.20445 14452.04266 14369.725 13083.69972 13466.02382 12021.55057 11976.68925 7288.831125 13174.30253 14106.4919 0.996151598 1.024495868 1.018660423 0.92749493 0.954597636 0.852199871 0.849019681 0.516700479 0.933917705 1 13.78407163 -3.878394685 0.827337403 0.997857619 7.81E-20 0.913704427 0.04205792 0.629476647 0.204449177 0.005395621 0.665585175 0.000132314 3.878394685 -0.997857619 LLAS(ph)SPALPSSGAQAR ddPTM_HeLa_CUDC101_4h_R1 1 LLASSPALPSSGAQAR 16 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 LLAS(0.84)S(0.157)PALPS(0.001)S(0.001)GAQAR 137.93 0.0003662 16920000 1323.9 1498.6 1123.7 1217 1503 806.07 1002.1 581.76 1593.3 1559.4 TRUE FALSE FALSE 1168.714449 1544.77009 1184.450621 1266.63452 1392.126684 790.6955578 1040.751333 647.9852068 1527.6235 1550.124619 0.753948705 0.996545742 0.764100258 0.817117866 0.898074043 0.510085156 0.671398492 0.418021363 0.985484316 1 10.59816849 -3.878066663 0.384838335 0.909460713 2.99E-28 0.686983225 0.107533783 3.758253851 0.307328345 0.032720324 1.672700438 0.000132414 3.878066663 -0.909460713 S(ph)PKPAAPAAPPFSSSSGVLGTGLCELDR ddPTM_HeLa_CUDC101_4h_R1 2 SPKPAAPAAPPFSSSSGVLGTGLCELDR 28 1 O43294-2;O43294;H3BSN4;H3BQC4;H3BS04;H3BN49 O43294-2 TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 1 0 S(1)PKPAAPAAPPFSSSSGVLGTGLCELDR;S(1)PKPAAPAAPPFSSSSGVLGTGLCELDR ; 133.98 1.79E-16 589740000 3960.3 3077.6 2989.6 2730.7 2859.7 2891.2 2543.5 2722.1 3652.7 2313 TRUE FALSE FALSE 3496.079637 3172.417208 3151.226819 2842.069749 2648.745628 2836.055177 2641.603647 3031.972861 3502.13416 2299.242173 1.520535626 1.379766449 1.370550199 1.236089779 1.152008109 1.233473886 1.148901876 1.318683563 1.523168895 1 11.16694271 -3.877365848 17.90106049 1.25437878 11.41009578 0 0.161056096 1276.114137 186137.2442 0.027077852 396.6642048 0.000132628 3.877365848 10.155717 ELVGPPLAETVFTPKT(ph)S(ph)PENVQDR ddPTM_HeLa_CUDC101_4h_R1 3 ELVGPPLAETVFTPKTSPENVQDR 24 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 2 0 ELVGPPLAET(0.148)VFT(0.543)PKT(0.655)S(0.655)PENVQDR;ELVGPPLAET(0.079)VFT(0.214)PKT(0.854)S(0.854)PENVQDR;ELVGPPLAET(0.055)VFT(0.534)PKT(0.7)S(0.711)PENVQDR ;; 80.277 0.00018316 119293000 5747.7 5369.3 4635.4 5172.4 5745.9 5387.6 5372.4 5298.7 5350.7 5348.5 TRUE FALSE FALSE 5073.963319 5534.721769 4886.003745 5383.352829 5322.036404 5284.840506 5579.615268 5901.88259 5130.141881 5316.686884 0.954346838 1.04100954 0.918994075 1.012539002 1.001006176 0.994010108 1.049453426 1.110067739 0.964913299 1 12.37631179 -3.876912475 0.861647752 0.980489327 1.280150041 0.616722675 0.031627737 1.875442924 0.655798238 0.0048203 0.621035564 0.000132766 3.876912475 0.299660714 (ac)AS(ph)PGIEVELLGK ddPTM_HeLa_CUDC101_4h_R1 2 ASPGIEVELLGK 12 0 Q8TCY9 Q8TCY9 URGCP Up-regulator of cell proliferation 1 0 AS(1)PGIEVELLGK;AS(1)PGIEVELLGK ; 111.61 2.69E-16 7951500 9598.6 7567.6 5932.5 7118 8475.7 8016.9 7916.1 6419.2 7356.7 7168.3 TRUE FALSE FALSE 8473.466659 7800.748786 6253.228895 7408.302807 7850.464497 7863.99099 8221.426629 7149.935781 7053.453712 7125.662633 1.189147886 1.094740123 0.877564546 1.039665107 1.101717118 1.103615396 1.153777137 1.003406441 0.989866357 1 12.79880846 -3.876701375 9.111177927 1.078920286 0.000172106 0.001940471 0.086820395 36840.38859 86662.87385 0.01340258 750703.3275 0.000132831 3.876701375 -1.07874818 MT(ph)T(ph)WSLRR ddPTM_HeLa_CUDC101_4h_R1 1 MTTWSLRR 8 1 Q8IW92 Q8IW92 GLB1L2 Beta-galactosidase-1-like protein 2 2 0 MT(0.999)T(0.809)WS(0.192)LRR 55.37 0.035221 4477800 1635.9 1433 1724.2 1703.9 1346.6 1496.7 1426.1 1392.6 1474.2 1578.2 TRUE FALSE FALSE 1444.142282 1477.149031 1817.415467 1773.392407 1247.264001 1468.152941 1481.105155 1551.127955 1413.432852 1568.812796 0.920531937 0.941571254 1.158465479 1.130404094 0.795036861 0.935836924 0.944092984 0.988727246 0.900956988 1 10.61545749 -3.875903474 16.22237824 0.970644049 2.855153896 0.003094468 0.101305997 912.2082607 120643.6215 0.013685188 744.3033207 0.000133075 3.875903474 1.884509847 EAVAMES(ph)YAK ddPTM_HeLa_CUDC101_4h_R1 1 EAVAMESYAK 10 0 F5GWF6;P78371-2;P78371 F5GWF6 CCT2 T-complex protein 1 subunit beta 1 0 EAVAMES(1)YAK 94.538 0.02218 5878100 1557.4 1208.5 1463.6 1268.7 1430.4 1279.6 1097.1 1155.4 1285.9 1177.2 TRUE FALSE FALSE 1374.843933 1245.732453 1542.726643 1320.44307 1324.882242 1255.193762 1139.415515 1286.926066 1232.894658 1170.197962 1.174881497 1.064548472 1.318346718 1.128392898 1.13218642 1.072633693 0.973694667 1.099750732 1.053577854 1 10.1925369 -3.875793205 19.30390881 1.096884362 1.816902257 0 0.092433539 72946.47227 4486195.927 0.013947254 1405149.592 0.000133109 3.875793205 0.720017895 S(ph)APT(ph)SPTATNISSK ddPTM_HeLa_CUDC101_4h_R1 2 SAPTSPTATNISSK 14 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 2 0 S(1)APT(0.943)S(0.057)PTATNISSK;S(1)APT(0.982)S(0.017)PTATNISSK ; 186.69 1.74E-10 55725000 10850.7 9778.7 8956.5 8842.9 9727.2 8861.9 7249.5 4786.8 8797.2 9257.9 TRUE FALSE FALSE 9578.797395 10079.97016 9440.715482 9203.551684 9009.643835 8692.874022 7529.115643 5331.709963 8434.575692 9202.833599 1.040853047 1.095311574 1.025848765 1.000078029 0.979007578 0.944586679 0.818130151 0.57935525 0.916519418 1 13.16786243 -3.87562713 0.889667146 1.025849995 5.81E-14 0.905670126 0.042985629 0.534592728 0.198052588 0.004695126 0.626483036 0.00013316 3.87562713 -1.025849995 LVS(ph)PGSANETSSILVESVTR ddPTM_HeLa_CUDC101_4h_R1 2 LVSPGSANETSSILVESVTR 20 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;A0A0A0MT44 O75369-8 FLNB Filamin-B 1 0 LVS(0.995)PGS(0.004)ANETSSILVESVTR;LVS(0.998)PGS(0.002)ANETSSILVESVTR ; 148.19 1.95E-05 159308000 5194.2 4360.5 4105.2 3765.2 4215.5 4895.9 4387 5146.8 5134.3 4308.3 TRUE FALSE FALSE 4585.34375 4494.841837 4327.13953 3918.761131 3904.530963 4802.518865 4556.20806 5732.690908 4922.661981 4282.67404 1.070673067 1.049540963 1.010382646 0.915026709 0.911703979 1.121383234 1.063869913 1.338577453 1.149436528 1 12.06429616 -3.874878294 1.440563243 1.019939668 1.821592419 0.61946337 0.072620729 1.423168281 1.257020371 0.009464674 2.151498927 0.00013339 3.874878294 0.801652751 NFLNALTS(ph)PIEYQR ddPTM_HeLa_CUDC101_4h_R1 1 NFLNALTSPIEYQR 14 0 E7EPJ7;O75962-5;O75962-4;O75962;E7EWP2;O75962-2 E7EPJ7 TRIO Triple functional domain protein 1 0 NFLNALT(0.1)S(0.899)PIEYQR 76.311 0.03354 7869400 2015.3 1806.1 1456.9 1407.4 1867.4 1603.9 1352.6 799.64 1767.9 1780 TRUE FALSE FALSE 1779.069589 1861.7438 1535.664421 1464.799855 1729.645622 1573.30828 1404.770235 890.6677853 1695.026414 1769.412481 1.005457805 1.052181908 0.867895099 0.827845328 0.977525388 0.889169878 0.793919027 0.503369223 0.957960019 1 10.78905469 -3.874227237 0.742409216 0.990906531 4.27E-40 0.805392544 0.066467769 1.348793576 0.356402792 0.011295317 1.270791698 0.00013359 3.874227237 -0.990906531 EAPAEGEAAEPGSPT(ph)AAEGEAASAASSTSSPK ddPTM_HeLa_CUDC101_4h_R1 1 EAPAEGEAAEPGSPTAAEGEAASAASSTSSPK 32 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 EAPAEGEAAEPGS(0.187)PT(0.811)AAEGEAAS(0.002)AASSTSSPK 93.043 5.04E-09 39122000 5897.6 5575.8 5154.3 4520.4 5791.6 6928.9 6568.1 10574 5654.9 6627.7 TRUE FALSE FALSE 5206.292268 5747.583789 5432.957049 4704.761451 5364.365206 6796.742777 6821.433817 11777.70142 5421.802629 6588.278146 0.790235651 0.872395437 0.824639903 0.714110933 0.814228709 1.031641747 1.03538947 1.787675195 0.822946832 1 12.68568575 -3.872139005 1.420403721 0.874700109 3.185891883 0.909644186 0.087735083 0.828578773 0.710036094 0.015743614 3.565048823 0.000134234 3.872139005 2.311191774 LAAQLGAPTS(ph)PIPDSAIVNTR ddPTM_HeLa_CUDC101_4h_R1 2 LAAQLGAPTSPIPDSAIVNTR 21 0 B8ZZS4;Q9H8Y5 B8ZZS4 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 0 LAAQLGAPT(0.103)S(0.893)PIPDS(0.004)AIVNTR;LAAQLGAPT(0.001)S(0.999)PIPDSAIVNTR ; 172.99 1.89E-09 34615000 5903.6 4666.6 4899.2 4890.7 5441.9 4241.3 3829.4 2514.6 5502.8 5305.8 TRUE FALSE FALSE 5211.588957 4810.372415 5164.065571 5090.163885 5040.461879 4160.404269 3977.101241 2800.8519 5275.972255 5274.240866 0.988121151 0.912050196 0.979110682 0.965098867 0.95567533 0.788815751 0.75406136 0.531043608 1.000328273 1 12.36474774 -3.871902727 0.65150336 0.990749403 7.55E-13 0.949387052 0.032584738 0.657523979 0.136026758 0.005456533 0.543051084 0.000134307 3.871902727 -0.990749403 TLTS(ph)PGDLDIYSGDK ddPTM_HeLa_CUDC101_4h_R1 1 TLTSPGDLDIYSGDK 15 0 Q96M89-2;Q96M89;H7BZ08 Q96M89-2 CCDC138 Coiled-coil domain-containing protein 138 1 0 T(0.113)LT(0.209)S(0.674)PGDLDIY(0.003)S(0.001)GDK 87.566 0.00295 0 1235.5 1038.4 1151.1 1130.9 1006.7 1230.3 766.83 513.98 1165.3 1375.7 TRUE FALSE FALSE 1090.676563 1070.391873 1213.331948 1177.02299 932.4377466 1206.834077 796.40689 572.4894056 1117.265841 1367.517275 0.797559623 0.7827264 0.887251642 0.860700637 0.681847143 0.88250006 0.582374281 0.418634131 0.817003091 1 10.41734334 -3.870331539 0.475807291 0.904599599 1.96E-96 0.677561512 0.091045786 2.804306406 0.327959291 0.021959357 1.53975048 0.000134793 3.870331539 -0.904599599 FHSPSTT(ph)WSPNKDTPQEK ddPTM_HeLa_CUDC101_4h_R1 1 FHSPSTTWSPNKDTPQEK 18 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 FHS(0.057)PS(0.193)T(0.159)T(0.555)WS(0.034)PNKDT(0.002)PQEK 54.953 0.033262 83560000 4944.2 3981.8 4589 3626.5 6182 5164.7 5054 5402.2 5306.7 5660.2 TRUE FALSE FALSE 4364.648371 4104.474538 4837.095221 3774.404345 5725.966176 5066.191952 5248.934473 6017.164612 5087.95558 5626.532879 0.775726094 0.729485569 0.859693763 0.67082241 1.017672215 0.900410975 0.932889683 1.069426722 0.90427901 1 12.45803048 -3.868742206 0.970260182 0.86720608 1.329900126 0.291369354 0.103226305 4.835012162 2.082441002 0.018820603 2.80226817 0.000135288 3.868742206 0.462694045 SLYAS(ph)SPGGVYATR ddPTM_HeLa_CUDC101_4h_R1 5 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SLYAS(0.925)S(0.075)PGGVYATR;SLYAS(0.928)S(0.072)PGGVYATR;SLYAS(0.922)S(0.078)PGGVYATR;S(0.001)LYAS(0.5)S(0.5)PGGVYATR;SLYAS(0.907)S(0.093)PGGVYATR ;;;; 241.76 3.77E-44 17567956000 18008.6 15615.5 13774.9 15146.8 17060.2 14578.3 13635.5 10250.4 15589.9 14856.5 TRUE FALSE FALSE 15897.65921 16096.59505 14519.61276 15764.55197 15801.70303 14300.24322 14161.4258 11417.2641 14947.27772 14768.13288 1.076484031 1.089954646 0.983171866 1.067470892 1.069986515 0.968317616 0.958917821 0.773101393 1.012130501 1 13.85019982 -3.866229293 1.083508858 1.040813881 0.402502044 0.824331292 0.037015689 1.153391908 0.604972183 0.006134998 1.035178453 0.000136073 3.866229293 -0.638311837 KEGSYSSLS(ph)PPTLTPVMPVNAGGK ddPTM_HeLa_CUDC101_4h_R1 1 KEGSYSSLSPPTLTPVMPVNAGGK 24 1 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 KEGS(0.001)Y(0.001)S(0.003)S(0.041)LS(0.486)PPT(0.057)LT(0.411)PVMPVNAGGK 81.48 4.66E-05 20756000 2310.9 1895.4 2286.8 1997.5 2417.4 1807.8 1730.3 1811.7 2352 1829.3 TRUE FALSE FALSE 2040.019805 1953.795027 2410.431325 2078.966684 2239.073218 1773.319227 1797.038251 2017.936605 2255.049564 1818.419242 1.121864396 1.07444696 1.325564132 1.143282383 1.231329479 0.97519823 0.98824199 1.109720222 1.240115322 1 10.82846914 -3.863343104 19.21366345 1.084766651 11.65398275 0 0.117052024 4384.145396 605902.3014 0.015562486 34838.91672 0.00013698 3.863343104 10.56921609 SQSAAVT(ph)PSSTTSSTR ddPTM_HeLa_CUDC101_4h_R1 2 SQSAAVTPSSTTSSTR 16 0 Q16186;A0A087WX59 Q16186 ADRM1 Proteasomal ubiquitin receptor ADRM1 1 0 SQS(0.013)AAVT(0.599)PS(0.382)S(0.003)T(0.001)TSSTR;SQS(0.002)AAVT(0.766)PS(0.225)S(0.007)T(0.001)TSSTR ; 235.02 1.40E-42 57742000 7126 5712.6 5530.6 5783.5 6134.4 4707.5 4828 2761.5 6360.9 5853.6 TRUE FALSE FALSE 6290.701082 5888.598435 5829.600965 6019.376128 5681.877533 4617.712281 5014.217577 3075.857998 6098.70101 5818.782527 1.081102628 1.01199837 1.001859227 1.034473466 0.976471883 0.793587363 0.861729675 0.528608516 1.048106022 1 12.50650161 -3.863161512 0.671839256 1.037419282 7.27E-19 0.896765919 0.050891755 1.040043298 0.225882673 0.008876464 0.930499143 0.000137037 3.863161512 -1.037419282 EKGS(ph)PGQNDQELK ddPTM_HeLa_CUDC101_4h_R1 5 EKGSPGQNDQELK 13 1 Q3T7B4;Q9H3H1-6;Q9H3H1-3;Q9H3H1-2;Q9H3H1-5;Q9H3H1-4;Q9H3H1 Q3T7B4 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" 1 0 EKGS(1)PGQNDQELK;EKGS(1)PGQNDQELK;EKGS(1)PGQNDQELK;EKGS(1)PGQNDQELK;EKGS(1)PGQNDQELK ;;;; 142.4 0.0011618 208668000 19101.6 15833.9 17694.1 16280.6 16808.7 16498.2 15639.3 14966.8 17285.4 16313.3 TRUE FALSE FALSE 16862.5394 16321.72369 18650.69657 16944.59324 15568.75569 16183.52432 16242.51304 16670.56001 16572.8885 16216.26777 1.039853291 1.006503095 1.150122632 1.044913261 0.960070215 0.997980827 1.001618453 1.0280146 1.021991542 1 13.9851542 -3.861372623 17.96979267 1.022422708 2.761814124 0 0.047740313 4123.010811 537138.4127 0.006613334 1486.211941 0.000137603 3.861372623 1.739391416 S(ph)PS(ph)PSPTPEAK ddPTM_HeLa_CUDC101_4h_R1 1 SPSPSPTPEAK 11 0 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 2 0 S(1)PS(0.993)PS(0.007)PTPEAK 121.21 0.038312 94748000 7000 5416.6 5912.9 5844.3 6066.2 5600.8 5316.3 5312.8 6020.5 5371.8 TRUE FALSE FALSE 6179.470611 5583.479026 6232.56926 6082.655815 5618.708512 5493.974072 5521.351472 5917.587677 5772.332442 5339.848295 1.157237111 1.045625029 1.16718096 1.139106484 1.052222498 1.028863325 1.033990325 1.108193969 1.080991842 1 12.38258304 -3.861155352 17.09193058 1.07752282 8.350770995 0.025706814 0.054888723 676.348701 83369.82437 0.009396799 255.2931066 0.000137672 3.861155352 7.273248175 DPSASNGGGS(ph)PARR ddPTM_HeLa_CUDC101_4h_R1 3 DPSASNGGGSPARR 14 1 O60504-2;O60504;E5RIA0;E5RJP2 O60504-2 SORBS3 Vinexin 1 0 DPSASNGGGS(1)PARR;DPSASNGGGS(1)PARR;DPSASNGGGS(1)PARR ;; 129.05 0.0004881 56132500 1851.92 977.28 1639.59 1729.35 1265.97 1099.84 1342.26 625.08 1455.9 1881.367 TRUE FALSE FALSE 1634.840745 1007.388838 1728.231195 1799.880368 1172.581915 1078.862384 1394.031418 696.2365805 1395.887186 1870.176545 0.874163858 0.538659754 0.924100561 0.96241201 0.626989959 0.576877294 0.745400974 0.37228388 0.746393269 1 10.86895875 -3.860995821 0.199269344 1.0267027 2.07E-11 0.316380021 0.16203352 10.29585929 0.323018348 0.17801574 2.717350226 0.000137722 3.860995821 -1.0267027 QQLS(ph)PSPGQEAGILPETEK ddPTM_HeLa_CUDC101_4h_R1 3 QQLSPSPGQEAGILPETEK 19 0 E5RJM0;B7ZLQ8;Q17RY0-2;Q17RY0 E5RJM0 CPEB4 Cytoplasmic polyadenylation element-binding protein 4 1 0 QQLS(0.948)PS(0.052)PGQEAGILPETEK;QQLS(0.815)PS(0.185)PGQEAGILPETEK;QQLS(0.981)PS(0.019)PGQEAGILPETEK ;; 257.72 1.25E-88 12453000 7629.5 7511.5 7715.5 6699.4 7765.7 7277.4 6076.8 6343.78 7215 6821.8 TRUE FALSE FALSE 6735.181576 7742.920412 8132.623268 6972.630489 7192.839782 7138.59572 6311.184212 7065.930273 6917.594646 6781.22363 0.993210362 1.141817588 1.199285514 1.028226006 1.060699392 1.052700237 0.930685162 1.041984553 1.02011009 1 12.72732991 -3.860766243 20.09425311 1.025377855 11.48433413 0 0.075151554 7278.672765 1042292.73 0.01113917 27346.89302 0.000137795 3.860766243 10.45895628 SATTT(ph)PSGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SATTTPSGSPR 11 0 Q2M2I8-2;Q2M2I8;A0A096LP60;A0A096LNZ0;A0A096LP25 Q2M2I8-2;A0A096LNZ0 AAK1 AP2-associated protein kinase 1 2 0 S(0.002)AT(0.07)T(0.231)T(0.696)PS(0.004)GS(0.996)PR 113.95 0.021641 46893000 8033.1 6922.2 7342 8659.4 8582.6 7099.5 7158.5 4225.4 9317.5 8632.8 TRUE FALSE FALSE 7091.472195 7135.464777 7738.930728 9012.567761 7949.478697 6964.088866 7434.605743 4706.402456 8933.428706 8581.451722 0.82637209 0.831498563 0.901820692 1.050238124 0.926355931 0.81152806 0.86635758 0.54843896 1.041016019 1 13.06700601 -3.858996886 1.336265631 0.915941817 1.45E-15 0.656863571 0.081160758 1.758062367 1.319469587 0.012671824 2.836022347 0.000138358 3.858996886 -0.915941817 GQVIIISDS(ph)DDDDDER ddPTM_HeLa_CUDC101_4h_R1 2 GQVIIISDSDDDDDER 16 0 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 0 GQVIIIS(0.24)DS(0.76)DDDDDER;GQVIIIS(0.09)DS(0.91)DDDDDER ; 169.58 7.85E-07 10246900 4160.6 4059.1 3661.8 3220.66 3866.3 3354.4 2671.39 1884.13 3443.8 3959.4 TRUE FALSE FALSE 3672.900775 4184.15606 3859.767984 3352.012436 3581.090752 3290.420409 2774.426407 2098.611743 3301.845106 3935.849313 0.933191411 1.063088479 0.980669654 0.851661781 0.909864801 0.836012801 0.704911745 0.533204291 0.838915529 1 11.94245927 -3.858316055 0.619947047 0.976127729 1.41E-13 0.822078016 0.061837888 1.061468499 0.198009906 0.008455559 0.824719324 0.000138575 3.858316055 -0.976127729 T(ph)GSGSPFAGNSPAR ddPTM_HeLa_CUDC101_4h_R1 2 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 T(0.905)GS(0.067)GS(0.028)PFAGNSPAR;T(0.936)GS(0.005)GS(0.059)PFAGNSPAR ; 158.31 0.00028731 181425000 3044.9 2923.7 3299.5 3187.1 3546.9 2829 2579.8 2686.2 3244.5 3104 TRUE FALSE FALSE 2687.981438 3013.775732 3477.88095 3317.083714 3285.252253 2775.041538 2679.30375 2991.98615 3110.760337 3085.53727 0.87115507 0.976742612 1.127155709 1.075042504 1.064726161 0.899370611 0.868342696 0.969680768 1.008174611 1 11.59130601 -3.857038888 19.05772298 0.962838618 4.613444022 0 0.086581795 13277.99567 1780287.869 0.013458506 12272.52395 0.000138983 3.857038888 3.650605404 SHSDNS(ph)PNAFK ddPTM_HeLa_CUDC101_4h_R1 3 SHSDNSPNAFK 11 0 O94875-12;O94875-11;O94875-9;O94875-4;O94875-10;O94875-5;O94875-3;H7BXR3;O94875-8;H7BZX1;O94875-2;O94875-7;O94875;H7C1R7;H7BZK1;O94875-6 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 SHSDNS(1)PNAFK;SHSDNS(1)PNAFK;SHS(0.001)DNS(0.999)PNAFK ;; 100.73 0.01126 36865700 9825 8151.5 9200 9430.8 8911.1 8185 8228.9 4719.4 9800.5 11116.7 TRUE FALSE FALSE 8673.328394 8402.638053 9697.379828 9815.428787 8253.745906 8028.884762 8546.291429 5256.63742 9396.519242 11050.57737 0.784875586 0.760380003 0.877545082 0.888227688 0.746906304 0.726557943 0.773379629 0.475688938 0.850319302 1 13.43183413 -3.856851089 0.06790667 1.312096991 2.99E-20 0.49613104 0.092790286 69.2270746 0.667396935 3.678079525 10.7671646 0.000139043 3.856851089 -1.312096991 TGADTTAAGPLFQQRPYPS(ph)PGAVLR ddPTM_HeLa_CUDC101_4h_R1 1 TGADTTAAGPLFQQRPYPSPGAVLR 25 1 O60828-5;O60828-4;O60828-2;O60828;H7C053 O60828-5 PQBP1 Polyglutamine-binding protein 1 1 0 TGADTTAAGPLFQQRPY(0.017)PS(0.982)PGAVLR 57.951 0.0038436 65461000 483.89 558.78 458.26 393.17 562.03 465.53 430.03 262 597.64 560.52 TRUE FALSE FALSE 427.1691477 575.9953495 483.0349218 409.205172 520.5701666 456.6507909 446.6164012 291.825021 573.0050262 557.1860021 0.766654485 1.033757753 0.866918623 0.734413949 0.934284359 0.819566158 0.801557109 0.52374794 1.028390922 1 9.122015204 -3.853389513 1.17855936 0.88797035 3.14E-16 0.569806348 0.098491153 2.233710359 1.332682398 0.015645178 3.068640651 0.000140156 3.853389513 -0.88797035 ASLGS(ph)LEGEAEAEASSPK ddPTM_HeLa_CUDC101_4h_R1 7 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 AS(0.001)LGS(0.999)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK;AS(0.024)LGS(0.976)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK;ASLGS(1)LEGEAEAEASSPK;AS(0.229)LGS(0.771)LEGEAEAEASSPK;ASLGS(0.996)LEGEAEAEAS(0.004)SPK ;;;;;; 309.33 1.38E-144 2290019000 31350.93 30125 25084.04 25074.3 30478.67 31157.4 28537.7 30161.6 30497 29532.5 TRUE FALSE FALSE 27676.02151 31053.11554 26440.15908 26096.93833 28230.31924 30563.12451 29638.40865 33595.07463 29239.90075 29356.83938 0.942745272 1.057781294 0.900647333 0.888955994 0.961626654 1.041090429 1.009591267 1.144369603 0.996016648 1 14.84140903 -3.852967286 1.066103713 0.967952627 1.388228947 0.524574244 0.050008811 2.30849563 1.1520656 0.007728917 1.351132403 0.000140292 3.852967286 0.420276321 SAPGS(ph)TPVR ddPTM_HeLa_CUDC101_4h_R1 1 SAPGSTPVR 9 0 A0A087WW42;A0A087WX51;F5H1D6;Q07864 A0A087WW42 POLE DNA polymerase;DNA polymerase epsilon catalytic subunit A 1 0 S(0.012)APGS(0.787)T(0.201)PVR 102.07 0.015805 16724000 4402.9 2497.3 3729.4 3812.2 3156.2 3139 3018.8 1666.8 2995 3338.8 TRUE FALSE FALSE 3886.798736 2574.238853 3931.022645 3967.677994 2923.373414 3079.128805 3135.236127 1856.541775 2871.544832 3318.940669 1.171096179 0.77562063 1.184420885 1.195465177 0.880815207 0.927744456 0.944649646 0.559377813 0.865199206 1 11.69650712 -3.852478254 0.852994571 1.06664737 9.09E-15 0.414765066 0.145569178 2.453952524 0.817548639 0.021008656 2.892684983 0.00014045 3.852478254 -1.06664737 RQQDPSPGS(ph)NLGGGDDLK ddPTM_HeLa_CUDC101_4h_R1 1 RQQDPSPGSNLGGGDDLK 18 1 Q13951-2;J3KTD8 Q13951-2 CBFB Core-binding factor subunit beta 1 0 RQQDPS(0.454)PGS(0.546)NLGGGDDLK 151.39 0.00012084 7494100 2528 2164.1 2677.6 2374.3 3016.2 2641.6 3004.8 3191.3 2152.5 2772.9 TRUE FALSE FALSE 2231.671672 2230.773356 2822.359155 2471.134217 2793.700935 2591.215881 3120.696143 3554.584692 2063.773039 2756.406667 0.809630777 0.809304876 1.02392698 0.896505674 1.013530031 0.940070241 1.132161005 1.28957194 0.748718635 1 11.42857304 -3.852369456 0.7955563 0.907823904 1.80841879 0.685196678 0.087065037 1.956138508 0.573539252 0.014144089 1.812324115 0.000140485 3.852369456 0.900594886 LSTTPSPTS(ph)S(ph)LHEDGVEDFRR ddPTM_HeLa_CUDC101_4h_R1 1 LSTTPSPTSSLHEDGVEDFRR 21 1 O94842-3;O94842-2;O94842;C9J919;C9JNL1 O94842-3 TOX4 TOX high mobility group box family member 4 2 0 LS(0.007)T(0.019)T(0.056)PS(0.296)PT(0.32)S(0.429)S(0.872)LHEDGVEDFRR 74.859 0.0017305 47942000 3680.9 2652.9 2591 2110.3 3372.4 3096.8 2994.7 3428.9 3531.4 2706 TRUE FALSE FALSE 3249.430482 2734.632705 2731.077297 2196.367155 3123.624771 3037.7337 3110.206582 3819.232116 3385.834197 2689.904592 1.208009567 1.016628141 1.015306381 0.816522327 1.161239986 1.129309087 1.156251635 1.419839249 1.258719067 1 11.39333929 -3.850106618 1.23072382 1.071729085 1.952301434 0.438543916 0.11802568 2.603964728 1.666153254 0.017714158 3.721744017 0.000141219 3.850106618 0.880572349 S(ph)LNLEDYKK ddPTM_HeLa_CUDC101_4h_R1 1 SLNLEDYKK 9 1 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog 1 0 S(1)LNLEDYKK 107.85 0.0231 20583000 1636.1 1216.5 1292.8 1237.1 1388.9 1121.3 1218.7 610.97 1432.5 1306.3 TRUE FALSE FALSE 1444.318838 1253.978923 1362.692679 1287.554285 1286.443614 1099.913071 1265.705667 680.5203552 1373.451744 1298.53007 1.112272155 0.965691094 1.049411724 0.991547532 0.990692202 0.847044744 0.974721877 0.52406977 1.057697296 1 10.34266371 -3.850037393 0.872158084 1.040653152 6.99E-32 0.79109943 0.071766903 1.379499983 0.477157979 0.011440956 1.624983465 0.000141242 3.850037393 -1.040653152 STS(ph)YGYSR ddPTM_HeLa_CUDC101_4h_R1 2 STSYGYSR 8 0 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 0 ST(0.002)S(0.998)YGYSR;ST(0.002)S(0.998)YGYSR ; 123.86 0.0067315 118525000 5015.9 4424.8 4813.7 4478.8 4927.1 4858 4378.2 4221.4 4838 4854.2 TRUE FALSE FALSE 4427.943806 4561.122843 5073.943183 4661.464823 4563.637649 4765.341744 4547.068641 4701.947113 4638.575592 4825.327003 0.91764637 0.945246372 1.051523178 0.966041228 0.94576754 0.987568665 0.942333781 0.974430771 0.961297667 1 12.236411 -3.849495979 18.10159141 0.965257878 5.843517265 0 0.035686817 2460.687449 303742.1366 0.005588857 13139.37285 0.000141418 3.849495979 4.878259387 T(ph)YSFEQPWPNAR ddPTM_HeLa_CUDC101_4h_R1 1 TYSFEQPWPNAR 12 0 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-5 Q5VWV2 PARD3 Partitioning defective 3 homolog 1 0 T(0.5)YS(0.5)FEQPWPNAR 178.22 1.11E-06 20166000 1131.1 794.48 716.13 781.58 1028.8 988.1 817.76 857.48 729.16 867.9 TRUE FALSE FALSE 998.5141726 818.9569871 754.846154 813.4562107 952.9074737 969.2536388 849.3012771 955.0920571 699.1037162 862.7376922 1.157378635 0.949253747 0.874942825 0.942877792 1.104515871 1.123462725 0.98442584 1.107048024 0.810331718 1 9.752778177 -3.849089233 12.79096016 1.046092311 6.299727079 0 0.115159691 72368.0455 40810.21666 0.014219703 10994517.8 0.00014155 3.849089233 5.253634769 SFGT(ph)RPLSSGFSPEEAQQQDEEFEK ddPTM_HeLa_CUDC101_4h_R1 1 SFGTRPLSSGFSPEEAQQQDEEFEK 25 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(0.186)FGT(0.204)RPLS(0.204)S(0.204)GFS(0.204)PEEAQQQDEEFEK 66.083 0.0022917 33329000 1123.5 764.39 675.79 897.81 860.75 819.32 696.13 397.63 855.59 881.16 TRUE FALSE FALSE 991.8050331 787.9399499 712.3252516 934.4265725 797.2541874 803.6928361 722.9799673 442.8945919 820.3222181 875.9188211 1.132302457 0.899558191 0.813232042 1.06679586 0.910191867 0.917542604 0.825396087 0.505634291 0.936527676 1 9.774653359 -3.848003352 0.634694101 1.037944385 1.56E-35 0.624350318 0.099234403 2.226781722 0.429675954 0.018461288 1.890094958 0.000141905 3.848003352 -1.037944385 DET(ph)PTLEASLDNANSR ddPTM_HeLa_CUDC101_4h_R1 2 DETPTLEASLDNANSR 16 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 DET(0.982)PT(0.018)LEASLDNANSR;DET(1)PTLEASLDNANSR ; 185.74 3.94E-10 13058400 2153.9 1550.56 1413.26 1450.3 1485.52 1557.73 1286.95 772.32 1423.61 1366.66 TRUE FALSE FALSE 1901.423107 1598.330916 1489.66511 1509.449503 1375.936149 1528.018896 1336.588093 860.237787 1364.928193 1358.531046 1.399616971 1.176514089 1.096526366 1.111089443 1.012811708 1.124758172 0.98384803 0.633211725 1.004708871 1 10.40783182 -3.846593205 0.842861305 1.176525044 4.59E-23 0.575122505 0.119047182 2.667953809 0.863496698 0.024803468 3.434945648 0.000142366 3.846593205 -1.176525044 S(ph)SPKEELHPAAPSQLAPSFSSSSSSSSGPR ddPTM_HeLa_CUDC101_4h_R1 2 SSPKEELHPAAPSQLAPSFSSSSSSSSGPR 30 1 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 S(0.5)S(0.5)PKEELHPAAPSQLAPSFSSSSSSSSGPR;S(0.498)S(0.498)PKEELHPAAPS(0.004)QLAPSFSSSSSSSSGPR ; 69.857 3.06E-05 39227000 2529 1954.7 2202.4 1698.53 2734 2726 2140.2 2101.82 2840.1 2472.5 TRUE FALSE FALSE 2232.554454 2014.92199 2321.468406 1767.803395 2532.318267 2674.006092 2222.748231 2341.082693 2723.029876 2457.79346 0.908357228 0.819809322 0.94453356 0.719264423 1.030321835 1.08797022 0.90436738 0.952514005 1.107916479 1 11.26314797 -3.846332937 17.63024553 0.940774375 6.97261336 0 0.112791488 3909.877839 444735.5711 0.013689889 8193.439051 0.000142452 3.846332937 6.031838985 T(ph)SPSVTPTPAR ddPTM_HeLa_CUDC101_4h_R1 2 TSPSVTPTPAR 11 0 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 T(0.92)S(0.08)PSVTPTPAR;T(0.931)S(0.069)PSVTPTPAR ; 160.72 0.00056108 60158000 7316 5807.4 6103.2 5907.2 6024.5 5633.1 5410.5 5550.6 5991.5 5422.9 TRUE FALSE FALSE 6458.42957 5986.319111 6433.157453 6148.121149 5580.084637 5525.658003 5619.184797 6182.457868 5744.527834 5390.64435 1.198081185 1.110501588 1.193393041 1.140516931 1.03514242 1.025045921 1.042395757 1.146886618 1.065647715 1 12.39624201 -3.845322555 13.30592206 1.09516607 7.060926519 0.057530589 0.06615454 396782.6371 183439.3835 0.01190204 71508577.17 0.000142783 3.845322555 5.965760448 SAS(ph)SGAEGDVSSEREP ddPTM_HeLa_CUDC101_4h_R1 2 SASSGAEGDVSSEREP 16 1 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 1 0 SAS(0.871)S(0.129)GAEGDVSSEREP;S(0.012)AS(0.494)S(0.494)GAEGDVSSEREP ; 182.7 5.73E-10 208500000 6379.6 5487.8 5530.6 4944.2 6075.7 5961 5479.2 5569.6 6806 5872 TRUE FALSE FALSE 5631.792959 5656.872613 5829.600965 5145.845847 5627.507716 5847.303857 5690.534579 6203.620751 6525.453799 5837.073083 0.964831668 0.969128283 0.998719886 0.881579822 0.964097526 1.001752723 0.974895208 1.062796484 1.117932516 1 12.51102942 -3.845105786 1.78468082 0.975219694 1.22984111 0.117251906 0.056039556 3.176382199 3.689248738 0.00494107 1.978768359 0.000142855 3.845105786 0.254621416 EAEQAASEAAGGDT(ph)T(ph)PGSSPSSLYYEEPLGQPPR ddPTM_HeLa_CUDC101_4h_R1 1 EAEQAASEAAGGDTTPGSSPSSLYYEEPLGQPPR 34 0 Q86TC9;Q86TC9-3 Q86TC9 MYPN Myopalladin 2 0 EAEQAAS(0.001)EAAGGDT(0.245)T(0.521)PGS(0.363)S(0.363)PS(0.341)S(0.157)LY(0.004)Y(0.005)EEPLGQPPR 71.676 2.92E-06 4620900 642.38 634.25 674.73 668.96 882.73 671.56 912.62 890.91 917.04 711.33 TRUE FALSE FALSE 567.0811902 653.7904907 711.2079447 696.2430803 817.6127665 658.7511119 947.8200591 992.3275932 879.2392231 707.0989775 0.801982761 0.924609583 1.005811021 0.984647273 1.156291824 0.931625038 1.340434775 1.403378628 1.243445757 1 9.465768363 -3.841948201 0.569334482 0.910895925 2.072193726 0.434120096 0.140608358 2.127821155 0.335464747 0.019704268 1.811849536 0.000143897 3.841948201 1.161297801 LHPDGS(ph)PDVAGEK ddPTM_HeLa_CUDC101_4h_R1 2 LHPDGSPDVAGEK 13 0 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 LHPDGS(1)PDVAGEK;LHPDGS(1)PDVAGEK ; 151.56 0.00027867 64122000 8396.1 6911.4 6862.1 6724.5 7445.5 6702.5 5714.7 4200 6769.7 6974.3 TRUE FALSE FALSE 7411.921886 7124.332042 7233.085883 6998.754176 6896.260299 6574.66098 5935.117893 4678.111023 6490.650101 6932.816553 1.069106882 1.027624485 1.043311305 1.009510943 0.99472707 0.948339096 0.856090428 0.674777846 0.936221239 1 12.75922587 -3.841625281 0.804831983 1.033628817 0.193051958 0.898195494 0.035150166 0.633678558 0.187459442 0.004160647 0.556900835 0.000144004 3.841625281 -0.840576859 SAMPFT(ph)ASPASSTTAR ddPTM_HeLa_CUDC101_4h_R1 1 SAMPFTASPASSTTAR 16 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 0 SAMPFT(0.482)AS(0.482)PAS(0.01)S(0.021)T(0.003)T(0.001)AR 130.47 0.0023138 107930000 1782.8 1709.5 1842.5 1387.7 1814.7 1279.6 1357.1 826.16 2101.8 1601.3 TRUE FALSE FALSE 1573.822887 1762.167669 1942.111123 1444.296404 1680.833196 1255.193762 1409.443802 920.2067149 2015.162914 1591.775396 0.988721707 1.107045424 1.220091181 0.907349371 1.055948723 0.788549543 0.885453943 0.578100853 1.265984459 1 10.63642107 -3.839062403 0.805283225 1.017759483 0.03744215 0.590065849 0.123855047 1.993315815 0.588540431 0.015163553 2.046297864 0.000144856 3.839062403 -0.980317333 AIPPERHS(ph)PHHLK ddPTM_HeLa_CUDC101_4h_R1 2 AIPPERHSPHHLK 13 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;C9JQE8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 AIPPERHS(1)PHHLK;AIPPERHS(1)PHHLK ; 51.771 0.034614 21712000 7273.6 7395 7369.5 7228.3 7600.7 6543.2 6544.7 6251.1 6556.4 7137.4 TRUE FALSE FALSE 6420.999634 7622.831185 7767.917462 7523.101317 7040.011504 6418.399362 6797.131271 6962.699956 6286.142417 7094.946427 0.905010306 1.074402924 1.094852166 1.060346458 0.992257176 0.904643809 0.958024326 0.981360469 0.886002802 1 12.79257608 -3.83789528 16.62589002 0.977575065 2.863700917 0 0.070747029 5615.24683 555965.0223 0.010264388 14018.29392 0.000145246 3.83789528 1.886125852 KSSEGGVGVGPGGGDEPPTS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 KSSEGGVGVGPGGGDEPPTSPR 22 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 KSSEGGVGVGPGGGDEPPT(0.186)S(0.814)PR 97.3 0.00011605 19103000 3112.4 3103.9 3053 2726.1 3272.9 3158.8 3152.5 3716.5 2796.2 3142.5 TRUE FALSE FALSE 2747.56919 3199.52748 3218.054415 2837.282141 3031.464688 3098.551153 3274.092981 4139.571337 2680.939452 3123.80827 0.879557563 1.024239391 1.030170272 0.90827666 0.97043878 0.991914639 1.048109454 1.325168186 0.858227913 1 11.60909019 -3.837591252 1.264546683 0.953635553 1.928155215 0.802010019 0.055105899 1.185781146 0.776724016 0.008416286 1.946573018 0.000145348 3.837591252 0.974519662 QSMAFSILNT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 QSMAFSILNTPK 12 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 QSMAFS(0.001)ILNT(0.999)PK;QSMAFS(0.009)ILNT(0.991)PK ; 165.86 0.00018306 265200000 9887.8 8551.7 7871.1 8025.4 9555.9 8415.4 7652.8 4765.8 9629.2 9156.5 TRUE FALSE FALSE 8728.767073 8815.167741 8296.635475 8352.710501 8850.980295 8254.890266 7947.97106 5308.319408 9232.2803 9102.036731 0.958990535 0.968482989 0.911514172 0.917674884 0.972417554 0.906927813 0.873207975 0.583201273 1.014309278 1 13.15197369 -3.836787247 1.168857085 0.96905729 1.27E-19 0.921925043 0.03269487 0.707628721 0.40435624 0.005080517 1.06229411 0.000145617 3.836787247 -0.96905729 ITEAPAS(ph)EKEIVEVKEENIEDATEK ddPTM_HeLa_CUDC101_4h_R1 2 ITEAPASEKEIVEVKEENIEDATEK 25 2 Q5JSL0;Q5JSK6;P82970;Q5JSK9 Q5JSL0 HMGN5 High mobility group nucleosome-binding domain-containing protein 5 1 0 IT(0.006)EAPAS(0.994)EKEIVEVKEENIEDATEK;IT(0.006)EAPAS(0.993)EKEIVEVKEENIEDAT(0.001)EK ; 54.235 0.0064516 29889000 2332 1924.86 2231.35 2138.8 2797.4 2966.1 3233.7 4516.6 2386.3 2847.1 TRUE FALSE FALSE 2058.646495 1984.162655 2351.98353 2226.029509 2591.041375 2909.526584 3358.424892 5030.751487 2287.935704 2830.165323 0.727394431 0.701076591 0.831041039 0.786536917 0.915508841 1.028041211 1.186653255 1.777546862 0.80841062 1 11.46667061 -3.834738169 0.999582383 0.846441215 3.1369291 0.922258547 0.084394925 1.053893746 0.456315556 0.018210091 3.172236655 0.000146306 3.834738169 2.290487885 ETEIS(ph)LKDSTLDN ddPTM_HeLa_CUDC101_4h_R1 2 ETEISLKDSTLDN 13 1 O75475 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 ETEIS(0.988)LKDS(0.006)T(0.006)LDN;ETEIS(0.999)LKDSTLDN ; 121.76 0.010172 18420900 9026.3 7537.1 6774.4 6773.8 6355.8 6588.9 7256 3835.2 9622.9 9072.7 TRUE FALSE FALSE 7968.250797 7769.309117 7140.644555 7050.064843 5886.945297 6463.22771 7535.866351 4271.783666 9226.239989 9018.735177 0.883521984 0.861463272 0.791756761 0.781713256 0.65274622 0.716644583 0.83557907 0.473656625 1.023008194 1 13.1387094 -3.155216722 0.134933565 1.097597201 4.85E-09 0.743283681 0.0780416 15.59780006 0.249799735 0.277662988 3.104036336 0.000699493 3.155216722 -1.097597196 down STDSPVPGS(ph)EDDLVAGATLHSPEWSEER ddPTM_HeLa_CUDC101_4h_R1 1 STDSPVPGSEDDLVAGATLHSPEWSEER 28 0 Q9H694;Q9H694-2 Q9H694 BICC1 Protein bicaudal C homolog 1 1 0 S(0.021)T(0.021)DS(0.274)PVPGS(0.684)EDDLVAGATLHSPEWSEER 123.71 1.00E-13 8485500 2300.3 1681.7 1737.1 1894 2305.1 1979.7 1585.8 1082 1890 2269.2 TRUE FALSE FALSE 2030.662321 1733.511184 1831.01288 1971.245507 2135.057365 1941.940521 1646.964837 1205.170506 1812.0934 2255.702697 0.900234913 0.768501623 0.811726156 0.873894201 0.946515411 0.86090269 0.730133824 0.534277193 0.803338757 1 11.13936122 -3.8339292 0.840124961 0.925578098 4.05E-46 0.592507267 0.078713129 1.905290103 0.603738444 0.013471839 1.933548473 0.000146579 3.8339292 -0.925578098 SKGDCQTLSEGS(ph)PGSSQSGSR ddPTM_HeLa_CUDC101_4h_R1 1 SKGDCQTLSEGSPGSSQSGSR 21 1 O94972-2;O94972-3;O94972 O94972-2 TRIM37 E3 ubiquitin-protein ligase TRIM37 1 0 SKGDCQTLS(0.001)EGS(0.967)PGS(0.029)S(0.003)QSGSR 113.62 8.61E-06 3669400 2473.5 1999.1 2053.1 2236.7 2308 1847.7 1822.5 1822.7 2276.7 1806.5 TRUE FALSE FALSE 2183.56008 2060.689901 2164.096796 2327.922294 2137.743438 1812.458201 1892.794435 2030.1888 2182.853462 1795.754858 1.21595666 1.147534082 1.205118164 1.296347485 1.190442799 1.009301572 1.054038321 1.130548968 1.215563167 1 10.8103747 -3.833134613 18.39323679 1.123046767 9.963814973 0 0.095886851 11901.65797 1319899.973 0.015424305 27163.27645 0.000146847 3.833134613 8.840768205 RDS(ph)LGTYSSR ddPTM_HeLa_CUDC101_4h_R1 2 RDSLGTYSSR 10 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 RDS(1)LGTYSSR;RDS(0.999)LGT(0.001)YSSR ; 113.95 0.0036779 93886000 3077 2191.68 3004.9 3298.3 2539.1 2357.9 2062.14 1414.8 2892.6 3327.7 TRUE FALSE FALSE 2716.318724 2259.203063 3167.353983 3432.81893 2351.795652 2312.926986 2141.677431 1575.855113 2773.365804 3307.906692 0.821159415 0.682970613 0.957510074 1.037761718 0.710961907 0.699211677 0.647441911 0.476390437 0.838405089 1 11.69170283 -3.831961064 0.466824326 0.917672025 9.20E-25 0.582702025 0.10836377 3.464543155 0.381938312 0.026140844 1.908444534 0.000147244 3.831961064 -0.917672025 AFVEDS(ph)EDEDGAGEGGSSLLQK ddPTM_HeLa_CUDC101_4h_R1 4 AFVEDSEDEDGAGEGGSSLLQK 22 0 A0A494C108;Q8N9T8;H0YFD2;F8WFC1 A0A494C108 KRI1 Protein KRI1 homolog 1 0 AFVEDS(1)EDEDGAGEGGSSLLQK;AFVEDS(1)EDEDGAGEGGSSLLQK;AFVEDS(1)EDEDGAGEGGSSLLQK;AFVEDS(1)EDEDGAGEGGSSLLQK ;;; 166.05 3.01E-08 151183000 20770 18930.5 17150.6 16817.3 20986.4 18878.5 18915.6 18713.8 20055.8 18383.4 TRUE FALSE FALSE 18335.37209 19513.72627 18077.81331 17503.18218 19438.27508 18518.42407 19645.18103 20844.10335 19229.09144 18274.05472 1.003355433 1.067837793 0.989261201 0.95781601 1.063708924 1.013372475 1.075031312 1.140639211 1.052261894 1 14.15750916 -3.831436361 0.852817067 1.004546487 1.33426561 0.537293544 0.034476441 1.865077604 0.605346807 0.004661441 0.685558036 0.000147422 3.831436361 0.329719123 AS(ph)WESLDEEWR ddPTM_HeLa_CUDC101_4h_R1 4 ASWESLDEEWR 11 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 0 AS(0.974)WES(0.026)LDEEWR;AS(0.997)WES(0.003)LDEEWR;AS(0.992)WES(0.008)LDEEWR;AS(0.815)WES(0.185)LDEEWR ;;; 216.91 3.11E-24 27536900 5383.33 5104.71 4183.59 4822.88 4697.72 4717.18 3587.81 2494.14 5942.05 5171.21 TRUE FALSE FALSE 4752.304218 5261.980065 4409.76753 5019.577893 4351.178555 4627.207651 3726.193034 2778.062816 5697.116184 5140.451413 0.924491613 1.02364163 0.857856086 0.976485816 0.846458454 0.900155897 0.724876618 0.540431684 1.108291029 1 12.32767934 -3.830758797 0.712312444 0.962954986 5.35E-13 0.807844945 0.067736234 1.103048439 0.258300938 0.008129021 0.983153717 0.000147653 3.830758797 -0.962954986 S(ph)SPSPALEQPFR ddPTM_HeLa_CUDC101_4h_R1 1 SSPSPALEQPFR 12 0 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-6 SYNRG Synergin gamma 1 0 S(0.661)S(0.31)PS(0.03)PALEQPFR 87.641 0.024579 19440000 1821.8 1492.6 1268.6 1201.4 1405.8 1338.9 1130 602.49 1228.1 1596.2 TRUE FALSE FALSE 1608.251366 1538.585237 1337.184353 1250.398285 1302.096935 1313.362713 1173.584479 671.0750263 1177.477198 1586.705731 1.013578847 0.969672704 0.842742499 0.788046744 0.820629124 0.82772923 0.739635873 0.422936032 0.742089207 1 10.63181888 -3.829674 0.372131697 1.014205603 7.80E-14 0.552251322 0.10871271 2.243962017 0.169081907 0.020944806 1.085022751 0.000148022 3.829674 -1.014205603 (ac)S(ph)KGPAVGIDLGTTYSCVGVFQHGK ddPTM_HeLa_CUDC101_4h_R1 3 SKGPAVGIDLGTTYSCVGVFQHGK 24 1 P11142;E9PKE3;P11142-2;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 0 S(0.947)KGPAVGIDLGT(0.039)T(0.011)Y(0.002)S(0.001)CVGVFQHGK;S(0.987)KGPAVGIDLGT(0.009)T(0.002)Y(0.001)S(0.001)CVGVFQHGK;S(0.955)KGPAVGIDLGT(0.033)T(0.01)Y(0.002)SCVGVFQHGK ;; 78.916 2.57E-09 69363000 9214.5 7611.4 7635 6966.7 9322.5 8457.5 8135.9 8231.5 8557.7 8116.6 TRUE FALSE FALSE 8134.390278 7845.898212 8047.771195 7250.832139 8634.797748 8296.187279 8449.704388 9168.540687 8204.947984 8068.322102 1.008188589 0.972432448 0.99745289 0.898679062 1.070209845 1.028241953 1.047269095 1.136362749 1.016933618 1 12.97805296 -3.82719913 0.885349659 0.996741046 1.327369506 0.546957624 0.039736415 2.388910427 0.824829941 0.005898191 0.917260465 0.000148868 3.82719913 0.330628459 EEPPKELPAAEPVLS(ph)PLEGTK ddPTM_HeLa_CUDC101_4h_R1 2 EEPPKELPAAEPVLSPLEGTK 21 1 F6VRR5;Q9BY77;Q9BY77-2 F6VRR5 POLDIP3 Polymerase delta-interacting protein 3 1 0 EEPPKELPAAEPVLS(0.999)PLEGT(0.001)K;EEPPKELPAAEPVLS(0.976)PLEGT(0.024)K ; 78.78 0.0011399 5172300 3879.2 3722.2 3291.6 3194.6 3097.1 3595.3 2669.81 2096.1 3269.4 3281.7 TRUE FALSE FALSE 3424.486056 3836.87657 3469.553853 3324.889596 2868.633103 3526.725643 2772.785466 2334.711551 3134.633948 3262.180302 1.049753766 1.176169376 1.063569003 1.019223123 0.879360684 1.081094641 0.849979219 0.715690531 0.960901501 1 11.67162081 -3.820407442 0.895969706 1.035743866 0.225824926 0.629525438 0.076929843 1.94855654 0.681238632 0.011542836 1.861433714 0.000151214 3.820407442 -0.80991894 T(ph)FIVYS(ph)YK ddPTM_HeLa_CUDC101_4h_R1 1 TFIVYSYK 8 0 G3V4P8 G3V4P8 GMFB 2 0 T(1)FIVY(0.372)S(0.62)Y(0.008)K 66.429 0.0026829 0 752.09 626.07 696.49 665.1 831.18 574.32 550.47 364.47 544.37 800.9 TRUE FALSE FALSE 663.9311503 645.3584746 734.1443562 692.2256528 769.8655073 563.3658029 571.7018123 405.9597916 521.9308382 796.1362112 0.833941656 0.810613141 0.92213411 0.869481432 0.96700225 0.707624895 0.718095477 0.509912482 0.655579825 1 9.636871473 -3.819970419 0.664812669 0.915682676 2.53E-15 0.465323794 0.10574731 2.012168307 0.411538828 0.013847222 1.594064172 0.000151366 3.819970419 -0.915682676 RDDIEDGDSMISSATSDTGS(ph)AK ddPTM_HeLa_CUDC101_4h_R1 1 RDDIEDGDSMISSATSDTGSAK 22 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5;Q86U86-6 Q86U86-8 PBRM1 Protein polybromo-1 1 0 RDDIEDGDSMISS(0.087)AT(0.236)S(0.027)DT(0.281)GS(0.369)AK 154.45 1.51E-07 8877000 3118.8 2878.2 2783.5 2531.7 2884 2413.9 2097 1388.6 2505.1 3085.9 TRUE FALSE FALSE 2753.218992 2966.87393 2933.98443 2634.953669 2671.253066 2367.858879 2177.881992 1546.672611 2401.838718 3067.54493 0.897531757 0.967181899 0.956460132 0.85897802 0.870811391 0.771906829 0.709975581 0.504205365 0.782984039 1 11.58286876 -3.819415307 0.540932677 0.956839969 8.13E-16 0.796546176 0.063288202 1.063359081 0.150328896 0.007867843 0.712178088 0.00015156 3.819415307 -0.956839969 VAVTSSSSSSSSSSSIPS(ph)AEKVPTTK ddPTM_HeLa_CUDC101_4h_R1 1 VAVTSSSSSSSSSSSIPSAEKVPTTK 26 1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 VAVTSSSSSSSSSS(0.002)S(0.002)IPS(0.723)AEKVPT(0.216)T(0.055)K 78.913 5.29E-05 8110500 2146.9 1602.7 1660.6 1566.5 2390.7 1836.9 1629.5 1167 2263.4 2148.6 TRUE FALSE FALSE 1895.243636 1652.077287 1750.377059 1630.388641 2214.342824 1801.864193 1692.350361 1299.846563 2170.101694 2135.820032 0.887361111 0.773509595 0.819533965 0.763354879 1.036764704 0.84364046 0.792365619 0.608593675 1.01605082 1 11.06057437 -3.81831509 0.043645729 1.500341644 3.20E-13 0.447293934 0.094655607 237.9096804 1.448932978 17.30966827 35.11002824 0.000151944 3.81831509 -1.500341644 AHTS(ph)PAPAPRPTPR ddPTM_HeLa_CUDC101_4h_R1 2 AHTSPAPAPRPTPR 14 1 Q96P48-3;Q96P48 Q96P48-3 ARAP1 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1" 1 0 AHT(0.051)S(0.835)PAPAPRPT(0.114)PR;AHT(0.062)S(0.853)PAPAPRPT(0.084)PR ; 91.592 0.0073644 23186000 1875.61 1643.11 1825.26 1502.9 1792.3 1511.7 1343.82 853.42 1611.41 1849.91 TRUE FALSE FALSE 1655.753839 1693.732272 1923.939077 1564.194758 1660.0856 1482.866841 1395.651588 950.5698832 1544.986998 1838.906653 0.900401245 0.921053969 1.04624075 0.850611289 0.902756862 0.806385054 0.758957278 0.516921227 0.840166082 1 10.84463253 -3.818172609 0.670903808 0.95436661 1.18E-16 0.802392318 0.061663831 1.297840506 0.26937532 0.009265087 1.082363402 0.000151994 3.818172609 -0.95436661 AGLGSPERPPKT(ph)SPGSPR ddPTM_HeLa_CUDC101_4h_R1 1 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 AGLGSPERPPKT(0.824)S(0.175)PGS(0.001)PR 79.293 0.028216 6800400 1908.6 1971.8 1457.7 1511.8 2090.6 2017.5 2134 3586.1 2491.8 1856.9 TRUE FALSE FALSE 1684.876801 2032.548821 1536.507671 1573.457739 1936.380603 1979.019549 2216.309095 3994.327128 2389.086949 1845.855076 0.912789321 1.101142147 0.832409701 0.85242756 1.049042597 1.072142431 1.200695073 2.16394406 1.294298225 1 10.85007357 -3.817699134 1.354986935 0.957311843 4.320428914 0.864828477 0.134496733 0.55210444 0.390049778 0.012035347 3.418332368 0.00015216 3.817699134 3.363117071 up TQDPSSPGT(ph)TPPQAR ddPTM_HeLa_CUDC101_4h_R1 2 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 0 TQDPS(0.008)S(0.093)PGT(0.868)T(0.031)PPQAR;TQDPS(0.001)S(0.06)PGT(0.879)T(0.06)PPQAR ; 162.64 0.00021927 218232000 9299.2 8742.4 9083.3 8828.9 10041.2 9035.5 7562.1 8944.9 9969.3 9487.5 TRUE FALSE FALSE 8209.161873 9011.742982 9574.370673 9188.980704 9300.480681 8863.162892 7853.77273 9963.151259 9558.361234 9431.067928 0.870438209 0.955537915 1.015194753 0.974330879 0.986153504 0.939783592 0.832755398 1.056418142 1.013497231 1 13.20320543 -3.817217942 10.97820297 0.944177801 12.45306017 0.201800619 0.057997209 117264.9619 49114.48364 0.008720259 33546981.03 0.000152329 3.817217942 11.50888236 EKVEPEVLSTDTQTS(ph)PEPGTR ddPTM_HeLa_CUDC101_4h_R1 1 EKVEPEVLSTDTQTSPEPGTR 21 1 P29375;P29375-2 P29375 KDM5A Lysine-specific demethylase 5A 1 0 EKVEPEVLSTDT(0.004)QT(0.222)S(0.771)PEPGT(0.004)R 137.94 3.55E-07 9824700 4092.3 4238.4 3591.4 3580.7 4088.5 3505.1 3090.3 2025.5 3223.4 3969 TRUE FALSE FALSE 3612.606798 4368.98008 3785.561947 3726.736423 3786.8995 3438.246057 3209.493906 2256.074733 3090.530088 3945.392211 0.915652134 1.107362677 0.959489385 0.944579455 0.959828402 0.871458621 0.81347905 0.571825211 0.783326453 1 11.94595301 -3.816897952 0.896961027 0.971351071 2.77E-13 0.687316132 0.077367158 1.189361534 0.414732622 0.008363257 1.366386623 0.000152441 3.816897952 -0.971351071 QNTQSDIGGS(ph)GK ddPTM_HeLa_CUDC101_4h_R1 1 QNTQSDIGGSGK 12 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 QNTQSDIGGS(1)GK 141.65 0.0011971 4278000 2245.1 1016.1 1780.7 2028.8 1368.2 1388.6 1363.1 867.02 2028 2076.2 TRUE FALSE FALSE 1981.932781 1047.404837 1876.970028 2111.543233 1267.270612 1362.114769 1415.675224 965.7180522 1944.404982 2063.85067 0.960308229 0.507500301 0.909450502 1.023108534 0.614032125 0.659987076 0.685938786 0.467920507 0.94212484 1 11.01112287 -3.816627881 0.219683165 1.039833442 1.76E-18 0.440542831 0.150602446 9.259957515 0.323215407 0.141380181 2.719094639 0.000152536 3.816627881 -1.039833442 GKS(ph)EEELEASK ddPTM_HeLa_CUDC101_4h_R1 2 GKSEEELEASK 11 1 Q7RTP6;J3QR21;A0A5F9ZHV5 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 0 GKS(1)EEELEASK;GKS(0.999)EEELEAS(0.001)K ; 150.11 0.0033324 32887000 4421.8 4323.9 4124.9 4198.2 4875.1 5235.6 4301.9 4194.5 5397.7 5253.1 TRUE FALSE FALSE 3903.483307 4457.114234 4347.904571 4369.420742 4515.473586 5135.739653 4467.825724 4671.984925 5175.204521 5221.854328 0.747528189 0.853550091 0.832636129 0.836756537 0.864726073 0.983508794 0.855601371 0.894698441 0.991066429 1 12.3503465 -3.81518547 14.84017311 0.87511801 11.72157065 0 0.078292817 587.0733644 47174.25379 0.013201091 153.5559819 0.000153043 3.81518547 10.84645264 VADNS(ph)FDAKR ddPTM_HeLa_CUDC101_4h_R1 3 VADNSFDAKR 10 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 VADNS(1)FDAKR;VADNS(1)FDAKR;VADNS(1)FDAKR ;; 136.01 0.0034108 307902000 8871 7325.6 7413.2 7271.6 8038.1 7246.7 6359.5 4120.1 9321.2 7594.9 TRUE FALSE FALSE 7831.154828 7551.293053 7813.980016 7568.167279 7445.145377 7108.481271 6604.788045 4589.11553 8936.976191 7549.725197 1.037276805 1.000207671 1.035001912 1.002442749 0.986147864 0.941554969 0.874838206 0.607851996 1.183748541 1 12.88220842 -3.813398404 0.982382933 1.016554638 2.50E-22 0.84674589 0.055153243 0.384188787 0.156437541 0.002757579 0.509347644 0.000153674 3.813398404 -1.016554638 APEAAVSEDGKS(ph)DDELLSSK ddPTM_HeLa_CUDC101_4h_R1 3 APEAAVSEDGKSDDELLSSK 20 1 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 APEAAVS(0.004)EDGKS(0.83)DDELLS(0.074)S(0.093)K;APEAAVS(0.092)EDGKS(0.779)DDELLS(0.1)S(0.028)K;APEAAVS(0.06)EDGKS(0.426)DDELLS(0.32)S(0.193)K ;; 63.302 0.010771 146426000 5857.9 5420.2 5441.9 5765.1 5618.4 5393.7 5032.6 3978 6014.3 5516 TRUE FALSE FALSE 5171.245842 5587.189937 5736.105575 6000.225697 5203.941825 5290.824159 5226.709068 4430.83944 5766.388008 5483.190587 0.9431089 1.018966941 1.046125515 1.094294572 0.949071848 0.964917063 0.953224037 0.808076862 1.051648291 1 12.4207999 -3.813238789 1.328827528 0.988693015 0.48589954 0.590672083 0.048396275 2.297897214 1.558554569 0.007410606 2.088382416 0.000153731 3.813238789 -0.502793475 YLSFT(ph)PPEKDGFPSGTPALNAK ddPTM_HeLa_CUDC101_4h_R1 2 YLSFTPPEKDGFPSGTPALNAK 22 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 Y(0.029)LS(0.379)FT(0.589)PPEKDGFPS(0.002)GT(0.002)PALNAK;Y(0.01)LS(0.015)FT(0.952)PPEKDGFPS(0.017)GT(0.006)PALNAK ; 81.016 0.0010832 558928000 5271.8 4378.8 4354.1 4547.8 5387.3 4780.4 5278.5 5974.7 3815 4633.6 TRUE FALSE FALSE 4653.847596 4513.705638 4589.495816 4733.278941 4989.889612 4689.221835 5482.093513 6654.835697 3657.744085 4606.039141 1.010379515 0.979953817 0.99640834 1.027624559 1.083336346 1.018059485 1.190196901 1.444806588 0.794119193 1 12.16931096 -3.811754015 1.01694751 1.005249909 2.144543952 0.796598446 0.072058752 0.498433571 0.214998951 0.003960876 0.768999021 0.000154257 3.811754015 1.139294043 KYNLHPGVT(ph)DYMDR ddPTM_HeLa_CUDC101_4h_R1 1 KYNLHPGVTDYMDR 14 1 Q8N108-17;Q8N108;Q8N108-13;Q8N108-12;Q8N108-19;Q8N108-16;Q8N108-14;Q8N108-18;Q8N108-15 Q8N108-17 MIER1 Mesoderm induction early response protein 1 1 0 KYNLHPGVT(0.569)DY(0.43)MDR 62.694 0.0029154 0 823.4 1052.6 944.13 921.93 667.99 935.64 696.96 555.37 1042.6 960.11 TRUE FALSE FALSE 726.8823002 1085.029358 995.1725236 959.5302903 618.7137085 917.7942259 723.8419807 618.5910759 999.6235867 954.399223 0.761612418 1.136871586 1.042721431 1.005376227 0.648275579 0.961646032 0.758426834 0.648147087 1.047385164 1 9.898449058 -3.811669401 0.792267117 0.916707624 0.260882559 0.324642074 0.139726226 5.064290625 1.407118248 0.02406442 3.456910826 0.000154287 3.811669401 -0.655825065 KAS(ph)GS(ph)ENEGDYNPGR ddPTM_HeLa_CUDC101_4h_R1 1 KASGSENEGDYNPGR 15 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 2 0 KAS(0.977)GS(0.836)ENEGDY(0.187)NPGR 134.02 0.0011459 25646000 6065.7 5600.1 5582.6 5457.3 4880.3 5215.2 5030.4 3132 4443.1 5272.5 TRUE FALSE FALSE 5354.687841 5772.632443 5884.412242 5679.872282 4520.289992 5115.728749 5224.424213 3488.53422 4259.953537 5241.138936 1.021664929 1.101408017 1.122735404 1.083709543 0.862463302 0.976071959 0.996810861 0.665606133 0.812791569 1 12.35566464 -3.811512364 1.500398811 1.02042902 5.66E-19 0.502451856 0.09631951 1.763590459 1.444232985 0.010589261 3.72844213 0.000154343 3.811512364 -1.02042902 SASSCDVSSS(ph)PSLPSR ddPTM_HeLa_CUDC101_4h_R1 2 SASSCDVSSSPSLPSR 16 0 O75140;A0A2R8Y7U0;A0A2R8YEW8;A0A2R8Y721;A0A2R8Y5T1;A0A2R8Y6V4;A0A2R8Y842;A0A2R8Y6H3;A0A2R8Y5K9;H0Y770;O75140-9;O75140-4;O75140-8;O75140-1;O75140-5;O75140-6;A0A5F9UWT1;A0A2R8YF97;A0A2R8Y5P2;A0A2R8YF50;A0A2R8Y6H8;A0A2R8Y7U6;A0A2R8Y5E9;O75140-2 O75140 DEPDC5 DEP domain-containing protein 5 1 0 SASSCDVS(0.015)S(0.421)S(0.558)PS(0.006)LPSR;SASSCDVSS(0.02)S(0.953)PS(0.026)LPSR ; 242.01 4.51E-44 20233700 4145.2 3023.5 3511.5 3150.5 3457 3207.9 2840.2 2909.2 3515.1 2815.5 TRUE FALSE FALSE 3659.30594 3116.650451 3701.342312 3278.991008 3201.983997 3146.714652 2949.747465 3240.371569 3370.20609 2798.753281 1.307477142 1.113585278 1.322496819 1.171589875 1.144075121 1.124327276 1.053950516 1.157791075 1.204181202 1 11.4505686 -3.810490555 17.90778392 1.15181421 15.96263892 0 0.095602622 11546.56967 1092847.038 0.016848509 11291.30918 0.000154707 3.810490555 14.81082471 EAELLTS(ph)AEKR ddPTM_HeLa_CUDC101_4h_R1 2 EAELLTSAEKR 11 1 O60566-3;O60566;O60566-2 O60566-3 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 0 EAELLT(0.111)S(0.889)AEKR;EAELLT(0.146)S(0.854)AEKR ; 93.348 0.0108 55977000 5774.6 5118.8 4925.5 5430.9 5989.6 4972.4 4771.9 2968.5 5556.7 5919.6 TRUE FALSE FALSE 5097.710142 5276.504161 5191.787429 5652.395576 5547.759141 4877.559755 4955.953781 3306.422041 5327.650474 5884.389956 0.866310727 0.896695188 0.88229833 0.960574608 0.942792572 0.828898117 0.842220488 0.561897166 0.905387052 1 12.52267714 -3.809891452 1.078949005 0.929598363 9.49E-16 0.845765954 0.04476116 1.37337679 0.653971538 0.008725423 1.843796462 0.00015492 3.809891452 -0.929598363 DFDTALK(ac)HYDK ddPTM_HeLa_CUDC101_4h_R1 1 DFDTALKHYDK 11 1 P31948;P31948-2;P31948-3 P31948 STIP1 Stress-induced-phosphoprotein 1 0 1 DFDTALK(1)HYDK 49.28 0.039681 0 587.78 603.44 530.35 996.15 1147.8 1185 1097.3 1552.5 519.25 391.19 FALSE TRUE FALSE 518.8813194 622.0312711 559.0223252 1036.777303 1063.129081 1162.398099 1139.623229 1729.230325 497.8462952 388.8631845 1.334354447 1.599614713 1.437580999 2.666175005 2.733941199 2.989221263 2.930653438 4.446886189 1.280260809 1 8.603118844 -3.128345686 0.268228201 0.913586107 9.530775297 0.907096668 0.314803156 2.937515988 0.099410579 0.156015573 9.324564601 0.000744139 3.128345686 8.61718919 up RLSKAS(ph)S(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 RLSKASSK 8 2 P36382 P36382 GJA5 Gap junction alpha-5 protein 2 0 RLS(0.378)KAS(0.622)S(1)K 111.46 0.031122 14176000 6663 5726.3 5557.2 5279.9 4913.9 5714.2 4526.3 2801.1 5975.9 5630.6 TRUE FALSE FALSE 5881.97324 5902.720516 5857.639042 5495.237144 4551.411387 5605.211156 4700.880907 3119.965902 5729.570873 5597.108941 1.0508949 1.054601684 1.046547263 0.981799211 0.813171842 1.001447571 0.839876614 0.557424544 1.023666134 1 12.45046611 -3.809557995 0.771198701 1.02238441 3.78E-19 0.814118311 0.064712251 1.435214298 0.379136832 0.010608279 1.486116339 0.000155039 3.809557995 -1.02238441 ASVALTPT(ph)APSR ddPTM_HeLa_CUDC101_4h_R1 2 ASVALTPTAPSR 12 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7;H7BZ26 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 ASVALT(0.085)PT(0.914)APSR;ASVALT(0.089)PT(0.911)APSR ; 161.25 0.00051936 118994000 8202.3 7914 7300.4 7119.7 7375.5 6200.6 5406 3838.9 7015.5 8336.9 TRUE FALSE FALSE 7240.838828 8157.82096 7695.081707 7410.07214 6831.424059 6082.333886 5614.511231 4275.904859 6726.318121 8287.311748 0.873725889 0.984374814 0.928537738 0.894146662 0.824323287 0.733933279 0.677482808 0.515958008 0.811640533 1 13.01668848 -3.809544945 0.484899915 0.951820476 4.29E-18 0.844533867 0.055710782 1.35325476 0.156880642 0.010100541 0.807772243 0.000155044 3.809544945 -0.951820476 GS(ph)DALRPPVPQGEDEVPK ddPTM_HeLa_CUDC101_4h_R1 1 GSDALRPPVPQGEDEVPK 18 1 Q8N3D4;E9PIH6 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 GS(1)DALRPPVPQGEDEVPK 73.346 0.0089081 9799300 1850 1619 1903.8 1632 2134.5 2025.1 1766.5 1678.1 1840.5 2084.2 TRUE FALSE FALSE 1633.145804 1668.879471 2006.725187 1698.560014 1977.042188 1986.474592 1834.634497 1869.128121 1764.633811 2071.803086 0.788272696 0.805520313 0.968588762 0.819846261 0.954261629 0.95881438 0.885525516 0.9021746 0.85173819 1 11.01667117 -3.809393421 15.46956614 0.897763074 4.823946039 0 0.071570918 3422.87061 279739.4597 0.012113942 3337.793238 0.000155098 3.809393421 3.926182965 ALS(ph)PAELR ddPTM_HeLa_CUDC101_4h_R1 1 ALSPAELR 8 0 A0A0G2JMS7;A0A0G2JNZ2;A0A669KB89;Q14160-2;Q14160;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 0 ALS(1)PAELR 84.817 0.03617 13530000 4974.4 4807.5 4227.4 4610.6 4556.2 3766 3539.5 2292.7 4565.1 4947.1 TRUE FALSE FALSE 4391.308373 4955.613377 4455.946031 4798.640197 4220.098203 3694.169825 3676.019701 2553.691701 4376.924646 4917.674429 0.892964436 1.007714815 0.906108384 0.975794609 0.858149165 0.751202602 0.747511807 0.519288484 0.890039532 1 12.26376051 -3.805295287 0.590691752 0.956633565 1.25E-13 0.877515705 0.049402514 1.310847306 0.21415338 0.009296953 0.964587168 0.000156569 3.805295287 -0.956633565 S(ph)LDYLNLDK ddPTM_HeLa_CUDC101_4h_R1 2 SLDYLNLDK 9 0 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 0 S(1)LDYLNLDK;S(1)LDYLNLDK ; 193.62 5.58E-16 35405000 7060 7049.5 6049.8 5129 6123.8 5382 4776.8 3593.4 7039.6 7983.8 TRUE FALSE FALSE 6232.437502 7266.686739 6376.870488 5338.182789 5672.059474 5279.347317 4961.042776 4002.458131 6749.424708 7936.312003 0.785306513 0.915625134 0.803505518 0.672627637 0.714697138 0.665214185 0.625106822 0.504322175 0.850448509 1 12.95425303 -3.803108391 0.1319314 1.097787673 1.76E-12 0.788777019 0.064074903 9.728417204 0.185369751 0.260143156 1.922439737 0.000157359 3.803108391 -1.097787673 TQT(ph)PPLGQTPQLGLK ddPTM_HeLa_CUDC101_4h_R1 2 TQTPPLGQTPQLGLK 15 0 H0Y3P2;D3DQV9;P78344-2;P78344;E9PKF8 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 T(0.02)QT(0.98)PPLGQTPQLGLK;T(0.002)QT(0.998)PPLGQTPQLGLK ; 155.56 0.00050444 935930000 14111.1 10808.8 10749 10970.6 11773.4 10676.1 9806.8 5923.9 11668.2 11261.5 TRUE FALSE FALSE 12457.01825 11141.80632 11330.12345 11418.02849 10904.89974 10472.47118 10185.05156 6598.252831 11187.23186 11194.5161 1.112778627 0.995291464 1.012113731 1.01996624 0.974128729 0.935500122 0.909825085 0.589418316 0.999349303 1 13.45050455 -3.800606449 0.860070007 1.04320875 8.80E-15 0.890807683 0.043642022 1.13118315 0.358740083 0.00820755 1.344897738 0.000158268 3.800606449 -1.04320875 DS(ph)ELLTFSLSRHR ddPTM_HeLa_CUDC101_4h_R1 1 DSELLTFSLSRHR 13 1 J3JS66;A6NNM2;J9JIE8;Q8IVV8 J3JS66 NKAIN4 Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 4 1 0 DS(0.985)ELLT(0.008)FS(0.003)LS(0.004)RHR 64.945 0.030079 7172400 1879.9 2402.3 1992.2 1933.2 2593.1 2308.9 2582.3 3003.9 1900.4 2534.4 TRUE FALSE FALSE 1659.540972 2476.312016 2099.904358 2012.044252 2401.812179 2264.861579 2681.900176 3345.851834 1822.064708 2519.325276 0.658724377 0.982926674 0.833518553 0.798644094 0.95335533 0.898995299 1.064531127 1.32807457 0.723235195 1 11.29882169 -3.800342385 0.908616462 0.84578689 2.070530511 0.68527314 0.101654833 2.416619465 0.843434606 0.02036934 3.575375841 0.000158364 3.800342385 1.224743621 GGPASVPSS(ph)SPGTSVK ddPTM_HeLa_CUDC101_4h_R1 1 GGPASVPSSSPGTSVK 16 0 O43237;O43237-2;J3KRZ2;J3KRI4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 GGPASVPS(0.185)S(0.494)S(0.303)PGT(0.018)S(0.001)VK 213.83 8.42E-24 14811000 5139.4 4335.6 4147.7 3974 4394.7 3813.9 3543.3 2072.8 4918.9 4496.1 TRUE FALSE FALSE 4536.967323 4469.174697 4371.937208 4136.076897 4070.511736 3741.156212 3679.966268 2308.759173 4716.14086 4469.356997 1.015127529 0.999959211 0.978202728 0.925429967 0.910760035 0.837068109 0.823377114 0.516575242 1.055216861 1 12.12585157 -3.799855393 0.620156199 1.004652588 1.80E-15 0.932940016 0.038469356 0.803379449 0.142433945 0.00587378 0.653924579 0.000158542 3.799855393 -1.004652588 ASSDLSIAS(ph)SEEDKLSQNACILESVSEK ddPTM_HeLa_CUDC101_4h_R1 2 ASSDLSIASSEEDKLSQNACILESVSEK 28 1 Q9H2G2-2;Q9H2G2 Q9H2G2-2 SLK STE20-like serine/threonine-protein kinase 1 0 AS(0.003)S(0.006)DLS(0.166)IAS(0.399)S(0.399)EEDKLS(0.026)QNACILESVSEK;AS(0.001)S(0.003)DLS(0.027)IAS(0.437)S(0.437)EEDKLS(0.093)QNACILES(0.003)VSEK ; 65.881 0.00046561 8700500 2671.8 2361.04 2237.95 2694.7 2726.3 2761.74 2570.21 2559.7 2719.82 2914.4 TRUE FALSE FALSE 2358.615654 2433.780844 2358.940346 2804.601513 2525.186281 2709.064411 2669.343861 2851.085901 2607.707868 2897.065019 0.814139703 0.840084992 0.814251779 0.968083731 0.87163604 0.935106528 0.92139591 0.984129069 0.900120588 1 11.50037635 -3.799022514 0.99786435 0.899438175 1.113728688 0.184584777 0.05871803 8.497966455 3.481391813 0.012230411 2.432431968 0.000158846 3.799022514 0.214290513 GLGPS(ph)PAGDGPSGSGK ddPTM_HeLa_CUDC101_4h_R1 3 GLGPSPAGDGPSGSGK 16 0 Q92934;F5GYS3;A8MXU7 Q92934 BAD Bcl2-associated agonist of cell death 1 0 GLGPS(1)PAGDGPSGSGK;GLGPS(0.999)PAGDGPS(0.001)GSGK;GLGPS(1)PAGDGPSGSGK ;; 186.85 6.97E-11 46570000 12311.1 10377.3 10165.6 10201.1 9952.7 10090.9 8581.1 6683.2 10659.4 9898.1 TRUE FALSE FALSE 10868.01152 10697.01231 10715.18309 10617.14495 9218.50915 9898.432895 8912.075901 7443.988474 10220.01502 9839.225661 1.104559637 1.087180301 1.089027069 1.07906306 0.936914089 1.006017469 0.905770048 0.75656243 1.038701151 1 13.26432907 -3.796026954 0.75660884 1.056472482 0.334315378 0.829107049 0.042634211 1.690580178 0.425290535 0.008559824 1.218243998 0.000159946 3.796026954 -0.722157105 AANMLQQS(ph)GSK ddPTM_HeLa_CUDC101_4h_R1 1 AANMLQQSGSK 11 0 P46063 P46063 RECQL ATP-dependent DNA helicase Q1 1 0 AANMLQQS(0.999)GS(0.001)K 98.407 0.030616 3816800 5054.4 3846.9 3853.5 4033.3 4320.5 4023.2 3498.9 2089.2 4271.9 4487.3 TRUE FALSE FALSE 4461.930894 3965.418429 4061.831866 4197.795407 4001.785323 3946.464163 3633.853745 2327.026083 4095.810474 4460.60934 1.000296272 0.888985815 0.910600224 0.941081159 0.897138713 0.88473656 0.814654113 0.521683453 0.918217706 1 12.12302509 -3.795657156 0.705087076 0.983487138 2.15E-38 0.852679359 0.049750085 1.199323241 0.266105073 0.008347885 1.093489016 0.000160082 3.795657156 -0.983487138 AEDGAT(ph)PSPSNET(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 AEDGAT(1)PS(0.112)PS(0.159)NET(0.729)PK;AEDGAT(1)PSPSNET(1)PK;AEDGAT(0.812)PS(0.188)PS(0.016)NET(0.984)PK ;; 189.04 9.40E-24 21258000 15939.9 12457.5 10868.8 10609.4 11386.2 10976.6 9816.6 5575.8 12387.8 11335.7 TRUE FALSE FALSE 14071.44909 12841.30081 11456.4002 11042.09719 10546.26271 10767.23964 10195.22955 6210.526534 11877.16964 11268.27475 1.248766949 1.139597773 1.016695142 0.979927933 0.935925236 0.955535775 0.904772893 0.5511515 1.054036212 1 13.45997903 -3.794857337 0.570495907 1.112202011 2.24E-13 0.759546084 0.084511239 2.56560658 0.390734558 0.020891134 2.123519651 0.000160377 3.794857337 -1.112202011 AS(ph)SASVPAVGASAEGTRR ddPTM_HeLa_CUDC101_4h_R1 1 ASSASVPAVGASAEGTRR 18 1 V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23;A0A2R8YFI4 V9GYZ0 PANK2 "Pantothenate kinase 2, mitochondrial" 1 0 AS(0.568)S(0.429)AS(0.004)VPAVGASAEGTRR 101.23 0.001016 22708000 1121.6 812.44 998.75 938.03 1141.6 1168.4 1138.4 1367.5 1180.1 1157.2 TRUE FALSE FALSE 990.1277482 837.4703134 1052.745446 976.2869179 1057.386442 1146.114717 1182.308469 1523.170672 1131.455779 1150.316923 0.860743443 0.72803442 0.915178613 0.848711254 0.91921315 0.996346914 1.027811072 1.324131326 0.983603523 1 10.16781568 -3.793940731 1.101465168 0.90880996 2.023112197 0.74742743 0.074607671 1.815313802 0.872205149 0.012965757 3.014057174 0.000160716 3.793940731 1.114302236 AEDGAT(ph)PS(ph)PSNETPK ddPTM_HeLa_CUDC101_4h_R1 4 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 2 0 AEDGAT(1)PS(0.99)PS(0.01)NETPK;AEDGAT(1)PS(0.772)PS(0.227)NET(0.002)PK;AEDGAT(1)PS(0.994)PS(0.005)NETPK;AEDGAT(1)PS(0.961)PS(0.038)NETPK ;;; 226.79 2.84E-32 125372000 30165.7 28418.1 25053.9 24053.3 26244.3 26311 21664.2 14303.1 26965.2 26632.3 TRUE FALSE FALSE 26629.72237 29293.62798 26408.38962 25034.29754 24308.31028 25809.16151 22499.79545 15931.30709 25853.68304 26473.8899 1.005886271 1.106510154 0.997525854 0.945622182 0.918199417 0.974891171 0.849886267 0.60177432 0.976572885 1 14.69228257 -3.793879065 0.928112156 1.005232739 5.92E-19 0.878617938 0.044685015 1.026131633 0.368361417 0.006932313 1.278329166 0.000160739 3.793879065 -1.005232739 S(ph)PHQLLSPSS(ph)FS(ph)PSATPSQK ddPTM_HeLa_CUDC101_4h_R1 1 SPHQLLSPSSFSPSATPSQK 20 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 3 0 S(0.999)PHQLLS(0.375)PS(0.056)S(0.495)FS(0.526)PS(0.523)AT(0.024)PS(0.003)QK 67.076 0.0096649 13616000 1992.6 1614 1178.7 1265.8 2101 1495.6 1125.2 661.76 2002.2 1909.5 TRUE FALSE FALSE 1759.030449 1663.725427 1242.424087 1317.424795 1946.013416 1467.073922 1168.599341 737.0920835 1919.668469 1898.142209 0.926711624 0.876501992 0.654547421 0.694060113 1.025220032 0.772899899 0.615654262 0.388322898 1.011340699 1 10.89037237 -3.793835932 0.298852476 0.987104839 9.67E-26 0.606508364 0.124474167 5.552487706 0.29308524 0.057805089 2.102175412 0.000160755 3.793835932 -0.987104839 TAST(ph)PTPPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_HeLa_CUDC101_4h_R1 2 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9J6B6;C9JSU8;C9J556;C9K073;C9J2Z7;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 T(0.018)AS(0.181)T(0.609)PT(0.182)PPQT(0.005)GGGLEPQANGET(0.004)PQVAVIVRPDDR;T(0.013)AS(0.131)T(0.45)PT(0.194)PPQT(0.194)GGGLEPQANGET(0.018)PQVAVIVRPDDR ; 78.45 1.37E-06 555320000 1734.5 1496.52 1460.18 1248.33 1578.29 1213.08 1202.3 746.47 1300.57 1287.8 TRUE FALSE FALSE 1531.184539 1542.626007 1539.121748 1299.242293 1461.862691 1189.94252 1248.673114 831.4451275 1246.959954 1280.140108 1.196106996 1.205044665 1.202307261 1.014921949 1.141955229 0.929540847 0.975419101 0.649495412 0.974080842 1 10.322086 -3.792393902 0.883517001 1.109039493 7.92E-11 0.689083324 0.090350437 2.03407615 0.669107322 0.015253006 2.654755452 0.00016129 3.792393902 -1.109039493 LGHPEALSAGTGS(ph)PQPPSFTYAQQR ddPTM_HeLa_CUDC101_4h_R1 3 LGHPEALSAGTGSPQPPSFTYAQQR 25 0 Q15942-2;Q15942;H0Y2Y8;H7C3D3 Q15942-2 ZYX Zyxin 1 0 LGHPEALSAGT(0.001)GS(0.999)PQPPSFTYAQQR;LGHPEALSAGT(0.004)GS(0.996)PQPPSFTYAQQR;LGHPEALSAGT(0.004)GS(0.996)PQPPSFTYAQQR ;; 208.16 7.53E-30 396623000 3296.51 2365.74 2313.87 2240.74 2993.71 2982.57 2031.48 1557.38 3361.88 2879.49 TRUE FALSE FALSE 2910.098095 2438.625645 2438.964811 2332.127063 2772.869978 2925.682447 2109.834864 1734.665844 3223.301883 2862.362665 1.016676933 0.851962498 0.852080989 0.814755967 0.968734679 1.022121509 0.737095578 0.606025877 1.126098353 1 11.48299076 -3.791363943 0.87700094 0.975440936 8.49E-39 0.561273511 0.098065521 2.298167931 0.745318083 0.015135437 2.618646003 0.000161672 3.791363943 -0.975440936 (ac)AGS(ph)PELVVLDPPWDK ddPTM_HeLa_CUDC101_4h_R1 1 AGSPELVVLDPPWDK 15 0 Q5SY74;Q96IY1-2;Q96IY1 Q5SY74 NSL1 Kinetochore-associated protein NSL1 homolog 1 0 AGS(1)PELVVLDPPWDK 42.809 0.025016 13923000 2051.9 1471.8 1744.8 1450.1 1890.6 1571.3 1400.3 1103.3 2047.5 2125.9 TRUE FALSE FALSE 1811.379392 1517.144413 1839.129166 1509.241346 1751.134205 1541.33007 1454.31004 1228.895212 1963.101183 2113.255052 0.857151337 0.717918271 0.87028263 0.714178511 0.828643094 0.729363012 0.688184816 0.581517698 0.928946641 1 11.04525118 -3.789227065 0.08283714 1.270827872 3.78E-13 0.745183677 0.060634188 25.8002501 0.299118141 1.14344091 4.285974208 0.00016247 3.789227065 -1.270827872 NDS(ph)GEENVPLDLTR ddPTM_HeLa_CUDC101_4h_R1 2 NDSGEENVPLDLTR 14 0 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 NDS(1)GEENVPLDLTR;NDS(1)GEENVPLDLTR ; 201.9 8.33E-17 132300000 4793.8 3737.4 3445.6 3671.3 3647.7 3283.4 2944 1910.7 2962.7 3554.8 TRUE FALSE FALSE 4231.878031 3852.544864 3631.879558 3821.031483 3378.616438 3220.774616 3057.551066 2128.206365 2840.576252 3533.655892 1.197592001 1.090243358 1.027796613 1.08132529 0.956124915 0.911456779 0.865265651 0.602267575 0.80386329 1 11.78694584 -3.788004661 0.621099698 1.09249875 6.19E-18 0.558200394 0.106684008 1.812854202 0.318896976 0.014075395 1.612866108 0.000162928 3.788004661 -1.09249875 TSLPTVGPSGLYS(ph)PSTNR ddPTM_HeLa_CUDC101_4h_R1 2 TSLPTVGPSGLYSPSTNR 18 0 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 TSLPTVGPS(0.139)GLY(0.011)S(0.684)PS(0.061)T(0.105)NR;TSLPTVGPS(0.06)GLY(0.001)S(0.849)PS(0.03)T(0.06)NR ; 137.32 7.71E-05 23511000 6317.1 5262.7 5047.9 5296.4 5465.4 4823.7 4658.5 2824.2 6646.4 6523.4 TRUE FALSE FALSE 5576.619114 5424.837549 5320.804743 5512.410085 5062.228331 4731.695959 4838.179905 3145.695512 6372.432579 6484.598527 0.859979086 0.836572615 0.820529555 0.850077312 0.780654085 0.729682175 0.74610323 0.485102586 0.982702715 1 12.66280154 -2.992061661 0.194448323 1.003252558 8.03E-19 0.847139491 0.05357813 7.220864194 0.161351261 0.064906739 1.895650176 0.001018447 2.992061661 -1.003252558 down ELEAIFGRPVVDGEEGEPHSIS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 ELEAIFGRPVVDGEEGEPHSISPR 24 1 P36507;G5E9C7 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 0 ELEAIFGRPVVDGEEGEPHS(0.238)IS(0.762)PR 114.8 1.94E-07 112070000 2091.7 1769.7 1182.5 1575.9 1741.5 1474.3 1348.4 989.44 1350.2 1352.5 TRUE FALSE FALSE 1846.514097 1824.222359 1246.429527 1640.172014 1613.033015 1446.180184 1400.40824 1102.07385 1294.544185 1344.45527 1.373429179 1.356848681 0.927088877 1.219952832 1.199766962 1.07566255 1.041617576 0.819717751 0.962876351 1 10.39280604 -3.785666448 0.902992833 1.180644171 0.261612636 0.289152769 0.147553744 4.273950052 1.447198177 0.025917981 4.745309408 0.000163807 3.785666448 -0.919031535 AGGPATPLS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 3 AGGPATPLSPTR 12 0 Q03252 Q03252 LMNB2 Lamin-B2 1 0 AGGPAT(0.008)PLS(0.986)PT(0.006)R;AGGPAT(0.005)PLS(0.985)PT(0.01)R;AGGPATPLS(0.892)PT(0.108)R ;; 134.18 0.0014317 163200000 8610 7957.3 7719.3 7667 7579.4 7697 6337.1 4318 8139.7 7924.9 TRUE FALSE FALSE 7600.748852 8202.454981 8136.628708 7979.6934 7020.282762 7550.192549 6581.52407 4809.543666 7804.178121 7877.762342 0.964836018 1.041216354 1.032860393 1.012939088 0.891151885 0.958418421 0.835456032 0.610521549 0.990659248 1 12.94357018 -3.781491528 0.943845949 0.990930241 1.03E-12 0.911854693 0.036699391 0.923624805 0.335487008 0.00589662 1.161635771 0.00016539 3.781491528 -0.990930241 EGMNPS(ph)YDEYADS(ph)DEDQHDAYLER ddPTM_HeLa_CUDC101_4h_R1 1 EGMNPSYDEYADSDEDQHDAYLER 24 0 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 2 0 EGMNPS(0.828)Y(0.218)DEY(0.389)ADS(0.566)DEDQHDAYLER 104.31 1.16E-05 13439000 2015.6 2263.4 1900.8 1862.6 2511 2296.2 2460.4 3140.5 2320 2447.5 TRUE FALSE FALSE 1779.334423 2333.132671 2003.562998 1938.564879 2325.768533 2252.403811 2555.298452 3498.001826 2224.368618 2432.942161 0.731350894 0.958975807 0.823514438 0.796798588 0.955948962 0.925794228 1.050291492 1.437766126 0.914271064 1 11.24848631 -3.778613489 1.111317639 0.871066014 2.446800583 0.823857166 0.077254694 1.643746025 0.781312482 0.015628753 3.931157114 0.000166489 3.778613489 1.575734569 TLEPVKPPTVPNDYMT(ph)SPAR ddPTM_HeLa_CUDC101_4h_R1 1 TLEPVKPPTVPNDYMTSPAR 20 1 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 TLEPVKPPT(0.049)VPNDY(0.04)MT(0.559)S(0.352)PAR 68.261 0.011408 56592000 1756.8 1356.7 1414.1 1470.2 1546.9 1278.9 1395.1 723.03 1266.2 1573.2 TRUE FALSE FALSE 1550.870567 1398.498319 1490.550523 1530.161111 1432.788269 1254.507113 1448.909474 805.3368126 1214.0067 1563.842536 0.991705067 0.894270546 0.953133381 0.978462393 0.916197274 0.802195288 0.926505988 0.514973083 0.776297275 1 10.61087954 -3.777060446 0.798071675 0.981882174 2.61E-34 0.565263104 0.092175633 1.528314946 0.413316482 0.009936641 1.595573838 0.000167086 3.777060446 -0.981882174 SVS(ph)TMNLSK ddPTM_HeLa_CUDC101_4h_R1 2 SVSTMNLSK 9 0 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40 Q14244-5 MAP7 Ensconsin 1 0 S(0.487)VS(0.492)T(0.021)MNLSK;S(0.017)VS(0.848)T(0.135)MNLSK ; 135.99 0.002402 79555000 4014.6 3129 3367.8 3598.4 4175.5 5396.3 6405.5 9871.4 2453.4 3732.5 TRUE FALSE FALSE 3544.014674 3225.400781 3549.873455 3745.158306 3867.481684 5293.374568 6652.562281 10995.12027 2352.269814 3710.298924 0.955183058 0.869310222 0.956762117 1.009395303 1.042363907 1.426670648 1.792999005 2.96340551 0.633983909 1 11.85731971 -3.776321962 0.889851541 0.963707823 6.121297737 0.966420816 0.117626045 0.267366211 0.087197407 0.008884606 1.646950884 0.00016737 3.776321962 5.157589914 up S(ph)ASDSGCDPASK ddPTM_HeLa_CUDC101_4h_R1 2 SASDSGCDPASK 12 0 Q7LBC6;H0Y9V5 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 0 S(0.877)AS(0.122)DSGCDPASK;S(0.999)AS(0.001)DSGCDPASK ; 161.87 9.83E-05 14411900 6844.8 3001 6566.6 8243.5 5239.7 4862.3 5383.1 3035.4 6908.1 6676.3 TRUE FALSE FALSE 6042.46292 3093.457253 6921.610259 8579.705561 4853.17777 4769.559729 5590.72797 3380.937666 6623.345194 6636.589071 0.910477183 0.46612156 1.042946939 1.292788429 0.731275919 0.718676368 0.842409845 0.509439055 0.998004415 1 12.69622623 -3.774915553 0.709818279 0.93877048 1.07E-15 0.244956501 0.208558527 5.524792473 1.214409761 0.034976036 4.876949414 0.000167913 3.774915553 -0.93877048 EQDVVTGVS(ph)PLLFR ddPTM_HeLa_CUDC101_4h_R1 2 EQDVVTGVSPLLFR 14 0 Q6P0Q8;Q6P0Q8-2 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 EQDVVT(0.475)GVS(0.525)PLLFR;EQDVVT(0.226)GVS(0.774)PLLFR ; 120.9 0.00025203 45080000 5615.2 4641.4 4206.8 4668.9 4946.5 4087 3928.1 3139.84 5025.3 4916.9 TRUE FALSE FALSE 4956.994768 4784.396033 4434.232333 4859.317923 4581.60655 4009.047284 4079.608133 3497.266694 4818.155007 4887.65406 1.01418691 0.978873704 0.907231215 0.994202508 0.937383557 0.820239574 0.834676121 0.715530733 0.985780693 1 12.25492646 -3.773429053 0.439352893 1.008489765 0.369575981 0.878146674 0.032757568 1.494982445 0.143106655 0.007402953 0.54527642 0.000168489 3.773429053 -0.638913784 SLNDDGS(ph)SDPR ddPTM_HeLa_CUDC101_4h_R1 1 SLNDDGSSDPR 11 0 P54259 P54259 ATN1 Atrophin-1 1 0 S(0.006)LNDDGS(0.549)S(0.445)DPR 122.52 0.0036971 13110000 1766.6 1583.9 1570.9 1495.9 1497.1 1541.8 1066 822.45 1719.6 1817.8 TRUE FALSE FALSE 1559.521826 1632.698082 1655.827606 1556.909268 1386.661916 1512.392734 1107.115977 916.0743835 1648.71736 1806.987645 0.86305063 0.903546898 0.916346944 0.861604822 0.767388709 0.836969051 0.61268597 0.506962173 0.912412083 1 10.81937093 -3.771472745 0.446408199 0.943216047 4.67E-30 0.891595992 0.047115623 1.813205531 0.178021429 0.013112492 0.992938032 0.000169249 3.771472745 -0.943216047 GGET(ph)PGSEQWK ddPTM_HeLa_CUDC101_4h_R1 1 GGETPGSEQWK 11 0 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5;D6RHI8 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 GGET(0.973)PGS(0.027)EQWK 123.84 0.016468 12181000 2857.4 2184.2 1841.7 1863.3 2494.2 2718.1 2334.1 3587.1 2225.7 2341.1 TRUE FALSE FALSE 2522.459904 2251.492613 1941.267873 1939.293428 2310.207835 2666.256771 2424.127019 3995.440964 2133.955704 2327.175033 1.08391499 0.967478845 0.834173556 0.833325126 0.992709101 1.145705301 1.041660805 1.71686311 0.916972584 1 11.18436401 -3.769554777 1.606087077 1.005305882 3.402293483 0.829417043 0.099364296 1.488645832 1.212771938 0.015479017 8.274771702 0.000169999 3.769554777 2.396987601 ISSLPVSRPIS(ph)PSPSAILER ddPTM_HeLa_CUDC101_4h_R1 1 ISSLPVSRPISPSPSAILER 20 1 Q5T5P2;Q5T5P2-2;Q5T5P2-7;Q5T5P2-3;Q5T5P2-9;Q5T5P2-10;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6;Q5T5P1;Q5T5P0 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 ISSLPVS(0.01)RPIS(0.856)PS(0.103)PS(0.031)AILER 64.257 0.0097518 159800000 1124 908.49 963.09 681.17 1176.4 789.67 796.88 647.83 993.81 951.61 TRUE FALSE FALSE 992.2464239 936.4795001 1015.157559 708.9510569 1089.619316 774.6083604 827.6159285 721.5763486 952.8447312 945.9497814 1.048941966 0.9899886 1.073162211 0.749459507 1.151878606 0.818868375 0.87490472 0.76280619 1.007288917 1 9.885619786 -3.768611154 0.478273699 1.023057558 0.443140314 0.362650455 0.104438177 4.683291255 0.515435045 0.020094458 1.694588429 0.000170368 3.768611154 -0.579917244 NEEPVRS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 NEEPVRSPER 10 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 NEEPVRS(1)PER;NEEPVRS(1)PER ; 86.014 0.019377 106208000 8236.3 7476.7 7237.8 6911.7 6800 5804.2 5036 3903.4 8135.4 8634.6 TRUE FALSE FALSE 7270.853399 7707.048265 7629.097361 7193.589001 6298.377548 5693.494555 5230.240207 4347.747278 7800.055369 8583.241015 0.847098827 0.897918193 0.888836437 0.838097053 0.733799451 0.663326888 0.609354928 0.506539112 0.908754089 1 13.06730679 -3.768381196 0.299524716 0.964982201 4.29E-15 0.943641582 0.035001259 2.038621765 0.106682681 0.02016525 0.758436977 0.000170459 3.768381196 -0.964982201 EQLDTS(ph)NESAEPK ddPTM_HeLa_CUDC101_4h_R1 1 EQLDTSNESAEPK 13 0 Q96DX7 Q96DX7 TRIM44 Tripartite motif-containing protein 44 1 0 EQLDT(0.015)S(0.985)NESAEPK 193.06 1.66E-12 9832100 3138.8 2872.3 2375.1 2361.8 2686.4 2487.1 1829.1 1415.2 3224.8 2823.4 TRUE FALSE FALSE 2770.874622 2960.792158 2503.50509 2458.124413 2488.229624 2439.662711 1899.649 1576.300648 3091.872379 2806.606291 0.987268728 1.054936764 0.892004375 0.875835139 0.886561693 0.869257195 0.67684912 0.561639391 1.101640935 1 11.45461098 -3.767783639 0.497921073 0.998038688 2.44E-19 0.881413346 0.054170827 1.221739068 0.143914155 0.008867709 0.793417754 0.000170693 3.767783639 -0.998038688 TNSTGGS(ph)SGSSVGGGSGK ddPTM_HeLa_CUDC101_4h_R1 1 TNSTGGSSGSSVGGGSGK 18 0 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EKH8;K7EIZ7 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 T(0.001)NS(0.144)T(0.144)GGS(0.709)S(0.002)GSSVGGGSGK 216.35 1.18E-24 6539500 2578.5 1115.1 2081.1 2459.7 1500.7 1619.5 1578.9 967.02 2306.8 2337.4 TRUE FALSE FALSE 2276.252139 1149.454909 2193.610561 2560.017198 1389.996351 1588.610736 1639.798702 1077.101648 2211.712728 2323.497041 0.979666468 0.494709005 0.944098711 1.101794903 0.598234612 0.683715412 0.705745982 0.463569193 0.951889625 1 11.18208209 -3.767273992 0.257921897 1.021705657 5.87E-15 0.378414006 0.172030424 8.703376984 0.368480794 0.105691783 2.948905812 0.000170894 3.767273992 -1.021705657 GVGDDQLGEES(ph)EERDDHLLPM ddPTM_HeLa_CUDC101_4h_R1 2 GVGDDQLGEESEERDDHLLPM 21 1 H0YF90;F5GX30;P20645 H0YF90 M6PR Cation-dependent mannose-6-phosphate receptor 1 0 GVGDDQLGEES(1)EERDDHLLPM;GVGDDQLGEES(1)EERDDHLLPM ; 62.781 0.0078917 15269000 8369.3 6318.9 5339.4 6449.6 5756.6 6253 4861.1 3786.6 4653.6 5702.4 TRUE FALSE FALSE 7388.263341 6513.577819 5628.064115 6712.642566 5331.947087 6133.734443 5048.594255 4217.651238 4461.776638 5668.481871 1.303393661 1.149086822 0.992869739 1.184204646 0.940630526 1.082077103 0.890643098 0.744053052 0.78712021 1 12.46874669 -3.766495999 0.624362939 1.138540482 0.193569287 0.224492666 0.147555937 3.515618448 0.612238532 0.022593577 2.737897084 0.0001712 3.766495999 -0.944971195 EYDS(ph)GDTDEIIAMK ddPTM_HeLa_CUDC101_4h_R1 2 EYDSGDTDEIIAMK 14 0 Q76FK4-2;Q76FK4-4;Q76FK4;F8WE42;F5H101;F5GWN9 Q76FK4-2 NOL8 Nucleolar protein 8 1 0 EYDS(0.998)GDT(0.002)DEIIAMK;EYDS(0.98)GDT(0.02)DEIIAMK ; 166.79 9.49E-06 9552400 3920.2 3375.25 3248.81 3290.7 3292.61 3371.37 2556.29 1837.34 3679.02 3578.3 TRUE FALSE FALSE 3460.680099 3479.237452 3424.450496 3424.90897 3049.72072 3307.066734 2654.886962 2046.495359 3527.369238 3557.016112 0.972916621 0.978133734 0.96273123 0.962860122 0.857381756 0.929730603 0.746380359 0.57534048 0.99166524 1 11.79645179 -3.764240356 0.676269337 0.985002734 4.75E-17 0.940295717 0.031798762 0.781614111 0.156167121 0.00512027 0.690478918 0.000172092 3.764240356 -0.985002734 VGPAT(ph)PSAQVGK ddPTM_HeLa_CUDC101_4h_R1 2 VGPATPSAQVGK 12 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 VGPAT(0.996)PS(0.004)AQVGK;VGPAT(0.788)PS(0.212)AQVGK ; 149.82 0.0031204 150606000 9004 6574.6 6679.2 6017.3 6400.4 6812.8 5320.5 3263.3 7996.8 7229.8 TRUE FALSE FALSE 7948.564769 6777.155633 7040.297755 6262.711503 5928.255243 6682.857191 5525.713467 3634.780881 7667.168519 7186.796828 1.105995475 0.943000866 0.979615526 0.871419028 0.82488143 0.929879799 0.768870138 0.505758124 1.066840861 1 12.81113319 -3.763117475 0.446402488 1.045127602 1.80E-16 0.824229679 0.068689237 2.259289708 0.220613094 0.017885879 1.37321404 0.000172537 3.763117475 -1.045127602 SNS(ph)LNNGQPK ddPTM_HeLa_CUDC101_4h_R1 2 SNSLNNGQPK 10 0 O60333-3 O60333-3 KIF1B Kinesin-like protein KIF1B 1 0 S(0.001)NS(0.999)LNNGQPK;S(0.334)NS(0.666)LNNGQPK ; 128.36 0.0027886 121056000 11299.1 5523.1 10793.3 11409.5 8368 7508 8132.7 3684.7 12125.4 12023.5 TRUE FALSE FALSE 9974.636626 5693.260165 11376.81845 11874.82873 7750.709311 7364.797409 8446.380963 4104.151354 11625.58588 11951.98369 0.83455909 0.476344372 0.951877006 0.993544589 0.648487273 0.61619875 0.706692812 0.343386626 0.972690909 1 13.54496246 -3.762900264 0.196916498 1.007908016 3.47E-23 0.461205486 0.162387948 13.15449027 0.392201925 0.209619919 3.381918412 0.000172623 3.762900264 -1.007908016 S(ph)LEITGER ddPTM_HeLa_CUDC101_4h_R1 1 SLEITGER 8 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 S(1)LEITGER 104.42 0.014792 2917800 2399.5 1890 1984.8 1760.6 1927.1 1943 1624.4 982.51 1960.5 2053.8 TRUE FALSE FALSE 2118.234247 1948.22866 2092.104292 1832.404878 1784.941672 1905.940512 1687.053652 1094.354967 1879.68736 2041.583906 1.037544546 0.954273128 1.024745682 0.897540812 0.874292586 0.933559726 0.826345489 0.536032325 0.920700518 1 10.99547315 -3.762883088 0.655095897 1.008935167 1.61E-30 0.821741735 0.057819496 1.330412893 0.251131767 0.008963983 1.164741327 0.00017263 3.762883088 -1.008935167 IILDLISES(ph)PIKGR ddPTM_HeLa_CUDC101_4h_R1 2 IILDLISESPIKGR 14 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 IILDLIS(0.1)ES(0.9)PIKGR;IILDLIS(0.119)ES(0.881)PIKGR ; 129.29 0.004503 546780000 595.37 605.95 631.9 556.84 710.2 629.6 729.4 671.39 680.93 566.18 TRUE FALSE FALSE 525.5816311 624.6186013 666.0624254 579.5503421 657.8099609 617.591429 757.5332023 747.8183237 652.8617772 562.8123362 0.933848811 1.109816827 1.183453849 1.029739941 1.168790943 1.097331009 1.345978319 1.328717009 1.159999053 1 9.136510141 -3.762816512 0.331814579 0.963199153 1.817318116 0.439086613 0.094130484 3.476156342 0.211296798 0.027573649 1.271619332 0.000172657 3.762816512 0.854118963 LSSSSATLLNS(ph)PDR ddPTM_HeLa_CUDC101_4h_R1 4 LSSSSATLLNSPDR 14 0 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40 Q14244-5 MAP7 Ensconsin 1 0 LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR;LSSSSATLLNS(1)PDR ;;; 299.56 6.28E-123 716399600 5033.9 4603.83 4021.25 4128.56 4399.35 4203 3586.93 3206.48 4181.62 4637.61 TRUE FALSE FALSE 4443.833873 4745.668545 4238.650939 4296.940522 4074.818715 4122.834778 3725.279092 3571.492722 4009.251854 4610.025289 0.963949999 1.029423538 0.919442014 0.932086106 0.883903766 0.894319341 0.808082138 0.774723022 0.869681098 1 12.17055895 -3.757978219 0.374213313 0.99283825 0.495019919 0.619622048 0.046575562 1.784319714 0.130367199 0.007452228 0.430827367 0.000174591 3.757978219 -0.497818331 RDPFRDS(ph)PLSSR ddPTM_HeLa_CUDC101_4h_R1 2 RDPFRDSPLSSR 12 2 Q9UJY1 Q9UJY1 HSPB8 Heat shock protein beta-8 1 0 RDPFRDS(0.785)PLS(0.175)S(0.04)R;RDPFRDS(0.986)PLS(0.013)S(0.001)R ; 80.719 0.028085 98980000 5098.4 3977.7 4181 3829.1 4589.3 3970.3 3666.2 2274.9 4626 4366.5 TRUE FALSE FALSE 4500.773281 4100.248222 4407.037507 3985.267249 4250.756482 3894.573142 3807.606562 2533.865421 4435.314322 4340.527864 1.036918417 0.94464276 1.015322939 0.91815267 0.979317865 0.897257952 0.877222007 0.583768956 1.021837542 1 12.08365479 -3.756973243 0.818700564 1.006508074 9.61E-19 0.898992501 0.040012219 1.005900107 0.277598356 0.00631848 1.115149197 0.000174995 3.756973243 -1.006508074 AGGPTTPLSPT(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 AGGPTTPLSPTR 12 0 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 1 0 AGGPTTPLS(0.122)PT(0.877)R 133.04 0.0070831 345060000 2163.3 1654.1 1468.6 1657.2 1578.4 1523.5 1164.9 928.43 1641.4 1918.9 TRUE FALSE FALSE 1909.721253 1705.06086 1547.996958 1724.787779 1461.964577 1494.441776 1209.830583 1034.118718 1573.740797 1907.486297 1.001171676 0.893878432 0.811537656 0.904220272 0.766435166 0.783461343 0.634253879 0.542136905 0.825033868 1 10.89745698 -3.756891948 0.315721483 1.01908756 4.94E-20 0.724625997 0.073023184 1.789929096 0.100671223 0.017588595 0.743055093 0.000175028 3.756891948 -1.01908756 ASQEPS(ph)PKPGTEVIPAAPR ddPTM_HeLa_CUDC101_4h_R1 2 ASQEPSPKPGTEVIPAAPR 19 1 I3L4I0;I3L1Y9;Q96CP2 I3L4I0 FLYWCH2 FLYWCH family member 2 1 0 ASQEPS(0.771)PKPGT(0.229)EVIPAAPR;AS(0.039)QEPS(0.95)PKPGT(0.012)EVIPAAPR ; 205.98 2.34E-23 66312000 5059 4044.7 4206.5 3941.9 4407.4 3644 3375.7 2314.09 4025.1 4148.6 TRUE FALSE FALSE 4465.991689 4169.312413 4433.916114 4102.66772 4082.274883 3574.496771 3505.90188 2577.516652 3859.183674 4123.923943 1.082947152 1.011006137 1.075169226 0.994845632 0.989900624 0.86677078 0.850137376 0.625015565 0.935803795 1 12.00980201 -3.754936537 0.661438503 1.041014787 0.052976379 0.866375449 0.047014418 1.034557035 0.197090341 0.006696884 0.898296347 0.000175818 3.754936537 -0.988038408 TTKT(ph)PEDGDYS(ph)YEIIEK ddPTM_HeLa_CUDC101_4h_R1 1 TTKTPEDGDYSYEIIEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 T(0.227)T(0.319)KT(0.453)PEDGDY(0.001)S(0.997)Y(0.002)EIIEK 77.575 0.0232 10251000 2642.5 2102.3 2082.3 2044.5 2546.3 2191 1876.3 1191.6 2705.4 2787.4 TRUE FALSE FALSE 2332.750156 2167.069371 2194.875437 2127.883547 2358.464522 2149.210325 1948.66952 1327.246927 2593.882267 2770.820421 0.841898716 0.782103869 0.792139187 0.767961551 0.851179132 0.775658469 0.703282502 0.479008642 0.936142324 1 11.4360975 -2.849995743 0.124060952 1.087425548 9.22E-16 0.735492473 0.06838518 20.63333574 0.278314526 0.338482959 3.76693962 0.001412551 2.849995743 -1.087425548 down VVNGGVPWPS(ph)PCPS(ph)PSSRPPSR ddPTM_HeLa_CUDC101_4h_R1 1 VVNGGVPWPSPCPSPSSRPPSR 22 1 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;F8WB06 Q99700;F8WB06 ATXN2 Ataxin-2 2 0 VVNGGVPWPS(0.992)PCPS(0.456)PS(0.313)S(0.218)RPPS(0.021)R 84.576 0.00083181 10225000 1581.7 1421.7 1197.1 1170.5 1384.3 1169.2 1162.7 769.6 1015.8 1053 TRUE FALSE FALSE 1396.295524 1465.500892 1261.818847 1218.238049 1282.182947 1146.899458 1207.545728 857.2081532 973.9282941 1046.736709 1.333951042 1.400066396 1.205478738 1.163843819 1.224933582 1.09569049 1.15362891 0.818933879 0.930442475 1 10.03168288 -3.754418862 1.434155021 1.185461615 5.95E-18 0.375699842 0.133513824 3.957646336 2.656352262 0.021337791 9.645051269 0.000176028 3.754418862 -1.185461615 TVHPNS(ph)PGIPYR ddPTM_HeLa_CUDC101_4h_R1 2 TVHPNSPGIPYR 12 0 J3KPH8;Q8WUI4-8;Q8WUI4-5;Q8WUI4-6;Q8WUI4-7;Q8WUI4;Q8WUI4-4;Q8WUI4-3;F8VWY3;C9J102;C9JNI4 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 0 TVHPNS(1)PGIPYR;TVHPNS(1)PGIPYR ; 121.13 0.002044 56537000 10515.6 7892.1 7887.8 7417.5 7365.4 7086.9 6522.3 4133.5 8200.3 8748.5 TRUE FALSE FALSE 9282.977309 8135.246247 8314.238327 7720.017711 6822.069116 6951.72919 6773.867296 4604.040932 7862.280163 8696.463533 1.067442791 0.935466033 0.956048202 0.887719207 0.784464753 0.79937427 0.778922061 0.529415309 0.904077863 1 13.08621312 -3.753982617 0.370003485 1.038840936 0.033301237 0.79715733 0.06453511 1.971093419 0.141150269 0.016685317 0.950767309 0.000176205 3.753982617 -1.005539698 DGAVNGPSVVGDQT(ph)PIEPQTSIER ddPTM_HeLa_CUDC101_4h_R1 1 DGAVNGPSVVGDQTPIEPQTSIER 24 0 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 DGAVNGPSVVGDQT(1)PIEPQTSIER 115.66 3.74E-07 7278800 1474.3 1293.1 1443.2 1135.2 1359.9 1635.2 1501.4 2602.3 1354.7 1402.2 TRUE FALSE FALSE 1301.484789 1332.938878 1521.223757 1181.498363 1259.582886 1604.011284 1559.309501 2898.535313 1298.858693 1393.859652 0.933727285 0.956293466 1.091375129 0.847645142 0.903665505 1.150769579 1.118699073 2.079502989 0.931843239 1 10.44486959 -3.753620928 1.415441839 0.967104077 4.586799465 0.940015399 0.083099424 0.686525302 0.451446176 0.01140773 5.034355682 0.000176351 3.753620928 3.619695388 up ASS(ph)FLDTSK ddPTM_HeLa_CUDC101_4h_R1 2 ASSFLDTSK 9 0 F5H269;Q9Y485 F5H269 DMXL1 DmX-like protein 1 1 0 AS(0.014)S(0.985)FLDTSK;AS(0.039)S(0.958)FLDT(0.001)S(0.001)K ; 89.548 0.029311 11315100 5030.5 3525.6 3733.5 3847.6 4821.4 5360.9 5864.8 7642.2 4113.2 3716.4 TRUE FALSE FALSE 4440.832416 3634.219557 3935.344303 4004.521759 4465.734928 5258.649764 6091.007301 8512.157157 3943.652155 3694.294688 1.202078554 0.983738403 1.065249157 1.083974641 1.208819357 1.423451622 1.648760539 2.304135939 1.06749799 1 11.85108324 -3.752891095 0.781639211 1.080889796 4.196818748 0.972942007 0.063896726 0.707765278 0.179561986 0.013790991 2.315384589 0.000176648 3.752891095 3.115928952 up RSSFS(ph)MEEGDVL ddPTM_HeLa_CUDC101_4h_R1 2 RSSFSMEEGDVL 12 1 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 RS(0.289)S(0.289)FS(0.422)MEEGDVL;RS(0.244)S(0.244)FS(0.513)MEEGDVL ; 136.38 0.0027878 29861000 7319.6 7128 5929.8 6043.9 7654 6795.9 6061.9 4086.3 7351.5 7634.4 TRUE FALSE FALSE 6461.607584 7347.605231 6250.382925 6290.396366 7089.379669 6666.27953 6295.709514 4551.467875 7048.468058 7588.990249 0.851444971 0.968192736 0.823611932 0.828884497 0.934166396 0.87841456 0.82958461 0.599746175 0.92877548 1 12.88969223 -3.747779308 1.116336493 0.917000785 4.15E-13 0.724408436 0.055734394 2.136796592 0.970983183 0.01049665 3.041910395 0.00017874 3.747779308 -0.917000785 GPSQEEEDNHS(ph)DEEDR ddPTM_HeLa_CUDC101_4h_R1 2 GPSQEEEDNHSDEEDR 16 0 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 0 GPSQEEEDNHS(1)DEEDR;GPSQEEEDNHS(1)DEEDR ; 149.72 2.34E-07 5329700 4056 2576.6 3236 3935.6 2704.8 2421.74 2821.07 1520.31 3536.6 3916.8 TRUE FALSE FALSE 3580.561828 2655.981992 3410.947948 4096.110779 2505.272293 2375.549344 2929.879615 1693.375945 3390.819851 3893.502699 0.919624848 0.682157481 0.876061534 1.052037483 0.643449481 0.61013168 0.752504837 0.434923532 0.870891871 1 11.92685291 -3.747578193 0.274896914 0.994958154 4.78E-13 0.518572272 0.127207931 5.8827204 0.269733728 0.063941267 2.073166129 0.000178822 3.747578193 -0.994958154 HSS(ph)PSGTVAAR ddPTM_HeLa_CUDC101_4h_R1 1 HSSPSGTVAAR 11 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 HS(0.024)S(0.974)PS(0.002)GTVAAR 96.756 0.016956 3769600 2343.2 1360.3 1809.7 2171.7 2207.4 1660.3 1731.5 1057.8 2360.5 2120.8 TRUE FALSE FALSE 2068.533648 1402.209231 1907.537856 2260.271313 2044.5645 1628.632544 1798.284535 1178.215676 2263.199191 2108.185387 0.981191531 0.66512615 0.904824532 1.072140679 0.969821967 0.772528144 0.853001138 0.558876692 1.073529493 1 11.04178602 -3.74329092 0.771178002 0.965407146 2.27E-18 0.482635882 0.117971888 3.213881417 0.788117123 0.019006882 3.222790332 0.000180596 3.74329092 -0.965407146 SVSTPSEAGSQDS(ph)GDGAVGSR ddPTM_HeLa_CUDC101_4h_R1 1 SVSTPSEAGSQDSGDGAVGSR 21 0 E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E9PGG1;E7ETL8;E7ESD3;E7EMU4;Q13409;Q13409-7;Q13409-5;E7ET01;E7ERR6;E7EUM4;E7ERH4 E7EQL5 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 0 SVST(0.007)PS(0.064)EAGS(0.003)QDS(0.924)GDGAVGSR 171.59 2.23E-09 28435000 2955.9 2392.6 2314.2 2622.3 2544.2 2273.3 2168.4 1929 2839.7 2694.6 TRUE FALSE FALSE 2609.413883 2466.31317 2439.312652 2729.248729 2356.519435 2229.94059 2252.035914 2148.589563 2722.646364 2678.572399 0.97418083 0.920756583 0.910676393 1.018919156 0.879766937 0.832510852 0.84075977 0.802139813 1.016454274 1 11.38724858 -3.74241805 0.298986584 0.999799108 0.550846849 0.760863369 0.03722729 3.578057786 0.184495351 0.016056234 0.620024623 0.00018096 3.74241805 -0.448952259 NNES(ph)QWKDSPLATR ddPTM_HeLa_CUDC101_4h_R1 1 NNESQWKDSPLATR 14 1 O95155;O95155-4;O95155-2;O95155-3;K7EP75 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 0 NNES(0.578)QWKDS(0.422)PLATR 70.68 0.025276 49346000 4006.9 3050.1 3008.8 3069.9 2960.1 2834.8 2158.4 2024.7 3134.1 3981.2 TRUE FALSE FALSE 3537.217256 3144.069966 3171.464829 3195.103791 2741.73932 2780.730913 2241.650211 2255.183664 3004.911071 3957.519645 0.893796512 0.79445467 0.801376901 0.807350077 0.692792346 0.702644879 0.566428069 0.56984775 0.759291511 1 11.9503808 -3.741646654 0.188532414 1.046722746 1.58E-14 0.602447239 0.080267478 2.434808149 0.068334321 0.041560698 0.624509555 0.000181281 3.741646654 -1.046722746 LDS(ph)PPPS(ph)PITEASEAAEAAEAGNLAVSSR ddPTM_HeLa_CUDC101_4h_R1 5 LDSPPPSPITEASEAAEAAEAGNLAVSSR 29 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 0 LDS(0.997)PPPS(0.997)PIT(0.003)EAS(0.003)EAAEAAEAGNLAVSSR;LDS(0.997)PPPS(0.98)PIT(0.022)EAS(0.001)EAAEAAEAGNLAVSSR;LDS(0.998)PPPS(0.998)PIT(0.003)EAS(0.001)EAAEAAEAGNLAVSSR;LDS(0.992)PPPS(0.979)PIT(0.027)EAS(0.002)EAAEAAEAGNLAVSSR;LDS(0.993)PPPS(0.979)PIT(0.027)EASEAAEAAEAGNLAVSSR ;;;; 102.19 1.24E-08 28139800 2473.87 2225.67 2436.69 2463.11 2956.13 2428.06 3220.72 2958.94 2661.81 2372.77 TRUE FALSE FALSE 2183.886709 2294.240255 2568.424832 2563.566272 2738.062179 2381.748801 3344.944249 3295.773769 2552.089065 2358.656659 0.925902759 0.972689368 1.088935442 1.086875558 1.160856613 1.009790379 1.418156491 1.397309675 1.082009565 1 11.20374971 -3.740971738 0.473950808 0.965084796 2.072397136 0.699223176 0.087845386 2.155316864 0.2291913 0.016989354 1.484135207 0.000181563 3.740971738 1.10731234 S(ph)QEADVQDWEFR ddPTM_HeLa_CUDC101_4h_R1 2 SQEADVQDWEFR 12 0 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 S(1)QEADVQDWEFR;S(1)QEADVQDWEFR ; 223.68 2.18E-32 154752000 1927.27 1868.18 1783.45 1917.64 2278.34 3381.4 4341.7 7047.2 1736.22 1912.14 TRUE FALSE FALSE 1701.358332 1925.736411 1879.868702 1995.849648 2110.271397 3316.905429 4509.160823 7849.424762 1664.652277 1900.766506 0.895090652 1.013136756 0.989005591 1.050023578 1.110221266 1.745035709 2.372285501 4.129610205 0.875779466 1 10.8923656 -3.740712786 0.827660866 0.949737641 9.339618921 0.994759973 0.070890954 0.219578067 0.06051905 0.010965156 2.06674951 0.000181672 3.740712786 8.38988128 up RDVYLS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 RDVYLSPR 8 1 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 RDVYLS(1)PR;RDVYLS(1)PR;RDVYLS(1)PR ;; 109.39 0.017494 78785000 15649.2 12726.7 10148.6 11801.8 11850.7 11946.6 9863.7 6381.7 10146.8 11743.5 TRUE FALSE FALSE 13814.8245 13118.79454 10697.26401 12283.12842 10976.49747 11718.73851 10244.14621 7108.166932 9728.544609 11673.64914 1.18341954 1.123795515 0.916359905 1.052209833 0.940279885 1.003862491 0.877544467 0.608907022 0.833376478 1 13.51096799 -3.738587274 0.682125434 1.078075699 6.08E-15 0.515422206 0.107120716 2.283150733 0.451459611 0.015438086 2.246788522 0.000182563 3.738587274 -1.078075699 IDVTAPDVS(ph)IEEPEGK ddPTM_HeLa_CUDC101_4h_R1 4 IDVTAPDVSIEEPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 IDVTAPDVS(1)IEEPEGK;IDVTAPDVS(1)IEEPEGK;IDVTAPDVS(1)IEEPEGK;IDVTAPDVS(1)IEEPEGK ;;; 266.44 1.58E-70 38704600 12811.5 11496.6 9248.5 9584.78 9935.8 9418.89 8923.2 6850.9 12892.6 13394.3 TRUE FALSE FALSE 11309.75539 11850.79662 9748.501885 9975.688757 9202.855829 9239.240366 9267.370813 7630.778764 12361.16157 13314.63011 0.849423176 0.890058268 0.732164679 0.74922763 0.69118374 0.693916413 0.69602916 0.573112336 0.928389409 1 13.70072473 -3.736641841 0.106171171 1.18492404 4.00E-17 0.887961146 0.041771658 9.494025933 0.140363321 0.318544301 1.716149679 0.000183383 3.736641841 -1.18492404 T(ph)KWWYHEAAY(ph)HK ddPTM_HeLa_CUDC101_4h_R1 1 TKWWYHEAAYHK 12 1 H3BMM0 H3BMM0 2 0 T(1)KWWYHEAAY(1)HK 97.214 0.00086124 0 1259.4 1145.3 1107.4 1162.3 1263.5 941.1 554.73 760.73 1298.5 1447.1 TRUE FALSE FALSE 1111.775041 1180.585335 1167.269394 1209.703618 1170.294122 923.1500855 576.1261219 847.3284282 1244.97528 1438.492585 0.772875059 0.82071006 0.811453188 0.840952279 0.813555895 0.641748241 0.400506842 0.589039135 0.865472157 1 10.49034207 -3.735937037 0.221917406 0.970311302 7.27E-32 0.693492567 0.088736616 6.840247008 0.234405876 0.09016423 1.901260174 0.00018368 3.735937037 -0.970311302 TELGSQT(ph)PESSR ddPTM_HeLa_CUDC101_4h_R1 3 TELGSQTPESSR 12 0 H0YID1;F8VUX5;H0YIQ8;F8VXI8;F8VX10;Q9H9L4-4;Q9H9L4 H0YID1 KANSL2 KAT8 regulatory NSL complex subunit 2 1 0 TELGSQT(0.999)PES(0.001)S(0.001)R;TELGS(0.011)QT(0.988)PESSR;TELGS(0.001)QT(0.824)PES(0.129)S(0.046)R ;; 168.67 5.21E-06 16360100 6100.2 5435.4 5329.1 5605.5 5817.7 5682.6 4951.4 3332.51 5351.1 6298.2 TRUE FALSE FALSE 5385.143803 5602.858231 5617.207266 5834.116519 5388.539861 5574.213873 5142.377157 3711.869468 5130.525393 6260.738026 0.860145207 0.89491977 0.897211677 0.931857633 0.860687644 0.890344533 0.821369164 0.592880496 0.819476134 1 12.61211702 -3.734346698 1.006863257 0.924090092 2.25E-18 0.750076302 0.050657712 1.716787021 0.647804583 0.008551343 2.211609787 0.000184354 3.734346698 -0.924090092 TDS(ph)SPNQAVR ddPTM_HeLa_CUDC101_4h_R1 1 TDSSPNQAVR 10 0 A0A0U1RRM4 A0A0U1RRM4 1 0 T(0.001)DS(0.882)S(0.117)PNQAVR 101.56 0.014566 4715000 2383.1 2363 2955.1 2431.2 2572.8 2281.6 2211.6 1597.4 3066.4 2466.1 TRUE FALSE FALSE 2103.756631 2435.801229 3114.861645 2530.354845 2383.00967 2238.082281 2296.902153 1779.241559 2940.001694 2451.431528 0.858174747 0.993624012 1.270629675 1.032194787 0.972089019 0.912969527 0.936963618 0.725796964 1.199299944 1 11.25940875 -3.733826376 1.355492208 0.970234566 0.162335593 0.259614142 0.127829595 5.07875248 3.006406919 0.017831664 8.017361156 0.000184575 3.733826376 -0.807898972 DGQSS(ph)PQPSPR ddPTM_HeLa_CUDC101_4h_R1 3 DGQSSPQPSPR 11 0 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 DGQS(0.193)S(0.807)PQPSPR;DGQS(0.234)S(0.765)PQPS(0.001)PR;DGQS(0.103)S(0.897)PQPSPR ;; 136.83 0.0015837 51876000 7335 4902.28 6385.9 6107.43 5916.57 5044.42 5355.16 2921.19 5919.41 6287.6 TRUE FALSE FALSE 6475.202419 5053.313436 6731.14107 6356.517394 5480.116419 4948.206093 5561.710315 3253.726462 5675.409414 6250.201076 1.035999057 0.808504139 1.076947924 1.017010064 0.876790419 0.791687505 0.889845022 0.520579486 0.908036293 1 12.60968689 -3.731477409 0.60442431 1.007644202 2.47E-13 0.627590249 0.094088112 2.345013551 0.37423566 0.015122031 1.901630626 0.000185576 3.731477409 -1.007644202 IQPAGNT(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 IQPAGNTSPR 10 0 H0Y5S9;H0Y682;P49674 H0Y5S9 CSNK1E Casein kinase I isoform epsilon 1 0 IQPAGNT(0.97)S(0.03)PR 115.91 0.029717 199290000 8089.3 6648.2 6978.5 7299.6 7031.6 6419.3 6413.3 5356.8 6636.3 6163.9 TRUE FALSE FALSE 7141.084517 6853.023162 7355.778819 7597.30924 6512.892877 6296.862548 6660.663129 5966.596459 6362.748905 6127.236849 1.165465722 1.118452466 1.200505056 1.239924199 1.062941263 1.027683882 1.087058211 0.973782572 1.038436911 1 12.5810209 -3.73114476 1.026248838 1.101097668 0.749999724 0.233004026 0.073305875 7.390325169 2.860598586 0.013696836 3.700733176 0.000185719 3.73114476 -0.351097944 KAEAAAAPTVAPGPAQPGHVS(ph)PTPATTSPGEK ddPTM_HeLa_CUDC101_4h_R1 1 KAEAAAAPTVAPGPAQPGHVSPTPATTSPGEK 32 1 A0A0C4DGH3;Q9Y6R0;M0QYC2 A0A0C4DGH3 NUMBL Numb-like protein 1 0 KAEAAAAPTVAPGPAQPGHVS(0.573)PT(0.141)PAT(0.196)T(0.067)S(0.023)PGEK 114.2 1.29E-11 14531000 4171 3611.6 3355.5 3267.1 3361.4 3281.3 2831 2180.9 3174.2 4497.8 TRUE FALSE FALSE 3682.081703 3722.869115 3536.90848 3400.34646 3113.436219 3218.71467 2940.192618 2429.16484 3043.358132 4471.046886 0.82353905 0.832661614 0.791069423 0.760525789 0.696355082 0.719901793 0.657607199 0.54331008 0.680681328 1 12.12639696 -3.728359155 0.106680463 1.171259452 1.83E-15 0.262406133 0.100296507 7.998811193 0.118560116 0.263083633 1.433219947 0.000186914 3.728359155 -1.171259452 SSSALDS(ph)PAGPR ddPTM_HeLa_CUDC101_4h_R1 2 SSSALDSPAGPR 12 0 Q9UPN4-3;Q9UPN4-2;I3L2J8;Q9UPN4 Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa 1 0 SSSALDS(1)PAGPR;SSS(0.001)ALDS(0.999)PAGPR ; 176.99 3.39E-07 199243000 5712 4615.3 4335.8 4271.5 4897.1 4190.8 3949.1 2291.32 4934.9 4901.3 TRUE FALSE FALSE 5042.448019 4757.491923 4570.206463 4445.710233 4535.850689 4110.867472 4101.41811 2552.154607 4731.481333 4872.14685 1.03495403 0.976467268 0.93802724 0.912474597 0.930975775 0.84374868 0.841809214 0.523825469 0.971128638 1 12.2503419 -3.725512632 0.576277818 1.009294943 2.66E-23 0.886633494 0.046370157 1.285570566 0.188135731 0.008336246 0.994558734 0.000188143 3.725512632 -1.009294943 NS(ph)PGLLVSPGNLNK ddPTM_HeLa_CUDC101_4h_R1 2 NSPGLLVSPGNLNK 14 0 Q06413-5;Q06413-6;A0A0D9SGI5;A0A0D9SFD0;Q06413-4;Q06413;Q06413-2;Q06413-3;A0A1B0GV32;A0A0R4J2G5;D8L7E9;A0A0D9SGF3;A0A0D9SFV9;D6RJG6;D6RC63 Q06413-5 MEF2C Myocyte-specific enhancer factor 2C 1 0 NS(1)PGLLVSPGNLNK;NS(1)PGLLVSPGNLNK ; 210.67 9.24E-24 119636000 4696.4 4469.1 3970.2 4252.7 4384.4 3856.2 3808.2 2520.9 3550.8 4005.2 TRUE FALSE FALSE 4145.895111 4606.787674 4184.841021 4426.143488 4060.971547 3782.64941 3955.08355 2807.869066 3404.434521 3981.376892 1.04132194 1.157084044 1.051103961 1.111711754 1.019991741 0.95008574 0.993395917 0.705250757 0.855089737 1 11.95905173 -3.724807997 1.235553376 1.037772636 5.55E-18 0.591757443 0.078504515 1.79700921 0.913910275 0.008471735 3.293138688 0.000188448 3.724807997 -1.037772636 SSS(ph)VTSIDKESR ddPTM_HeLa_CUDC101_4h_R1 3 SSSVTSIDKESR 12 1 H0Y332;Q5T5C0-3;Q5T5C0-2;Q5T5C0;Q5JRH0 H0Y332 STXBP5 Syntaxin-binding protein 5 1 0 S(0.012)S(0.041)S(0.913)VT(0.032)S(0.002)IDKESR;SSS(1)VTSIDKESR;S(0.008)S(0.036)S(0.951)VT(0.004)SIDKESR ;; 166.24 0.00016139 96287000 8179.6 9326.6 7963.4 9641.3 13002.7 11341.5 11838.6 14297.4 10034.8 9761 TRUE FALSE FALSE 7220.799687 9613.941491 8393.925492 10034.51389 12043.51673 11125.17978 12295.21877 15924.95822 9621.161297 9702.941138 0.744186694 0.99082756 0.865090839 1.034172396 1.241223311 1.146578097 1.26716411 1.641250627 0.991571644 1 13.24420641 -3.72410145 0.493434781 0.880616557 2.546635434 0.808715137 0.103701319 2.266468175 0.254795035 0.025698592 2.458657485 0.000188755 3.72410145 1.666018877 YIDLEPDT(ph)PLSPEELKEK ddPTM_HeLa_CUDC101_4h_R1 1 YIDLEPDTPLSPEELKEK 18 1 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 YIDLEPDT(0.611)PLS(0.389)PEELKEK 105.28 0.00097419 13883000 3924.5 3187.4 3153.5 3242.7 4152 3256.4 2911 970.55 4143.5 4508.1 TRUE FALSE FALSE 3464.476059 3285.600016 3323.987749 3374.951322 3845.715232 3194.289596 3023.278245 1081.033489 3972.703176 4481.285621 0.773098694 0.73318246 0.741748692 0.753121226 0.85817231 0.712806517 0.674645292 0.241232892 0.886509701 1 12.12969697 -3.724076234 0.181300462 1.001710803 2.47E-32 0.594318629 0.12052338 11.9943201 0.319291891 0.201780981 2.840386811 0.000188766 3.724076234 -1.001710803 SES(ph)SPIVR ddPTM_HeLa_CUDC101_4h_R1 2 SESSPIVR 8 0 H0Y8J2;Q03188;Q03188-2 H0Y8J2 CENPC Centromere protein C 1 0 S(0.02)ES(0.49)S(0.49)PIVR;SES(0.5)S(0.5)PIVR ; 120.31 0.0074035 10543600 7502.2 7194.7 7085.7 6060 7176.1 6525.2 5598.3 3550.6 7177.4 7834.4 TRUE FALSE FALSE 6622.803489 7416.360179 7468.774375 6307.152994 6646.7334 6400.742682 5814.228306 3954.785952 6881.544534 7787.80064 0.850407425 0.952304832 0.959035127 0.809876021 0.853480168 0.821893494 0.746581554 0.507818078 0.883631317 1 12.92700024 -3.723177747 0.599599378 0.930960013 1.89E-32 0.840647015 0.052786827 1.983141693 0.309917516 0.011654749 1.47679654 0.000189157 3.723177747 -0.930960013 NASVYS(ph)PSGPVNR ddPTM_HeLa_CUDC101_4h_R1 2 NASVYSPSGPVNR 13 0 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 NAS(0.182)VYS(0.79)PS(0.027)GPVNR;NAS(0.279)VYS(0.672)PS(0.049)GPVNR ; 169.98 5.01E-07 61134000 2601.3 2094.32 2249.16 2169.65 2057.4 2110.72 1638.85 1155.45 2034.79 2462.31 TRUE FALSE FALSE 2296.379557 2158.843517 2370.756393 2258.137705 1905.629701 2070.461533 1702.060993 1286.981758 1950.915095 2447.664071 0.938192289 0.882001555 0.968579153 0.922568473 0.778550343 0.845892848 0.695381778 0.525799996 0.797051817 1 11.25718985 -3.722558344 0.467921265 0.972999558 1.36E-16 0.733431699 0.070307435 1.41613275 0.145558131 0.009595386 0.848861055 0.000189427 3.722558344 -0.972999558 LEAS(ph)YSDSPPGEEDLLVHVAEGSK ddPTM_HeLa_CUDC101_4h_R1 4 LEASYSDSPPGEEDLLVHVAEGSK 24 0 Q7Z3C6;C9JS65;C9JFV2;F2Z3I6;C9JX27;C9IYZ9;C9JKV7;C9JDK4;C9JXG2;Q7Z3C6-3 Q7Z3C6 ATG9A Autophagy-related protein 9A 1 0 LEAS(0.839)Y(0.046)S(0.109)DS(0.007)PPGEEDLLVHVAEGSK;LEAS(0.949)YS(0.051)DSPPGEEDLLVHVAEGSK;LEAS(0.986)YS(0.014)DSPPGEEDLLVHVAEGSK;LEAS(0.963)Y(0.003)S(0.033)DS(0.001)PPGEEDLLVHVAEGSK ;;; 203.24 3.46E-21 58099000 24526.7 13297.4 16423.4 17320.2 16522 16596.8 14826.8 9034.9 14880.1 15346.7 TRUE FALSE FALSE 21651.71741 13707.07713 17311.29868 18026.59262 15303.20498 16280.24369 15398.67464 10063.3965 14266.73598 15255.41715 1.419280587 0.89850556 1.134764033 1.181651898 1.003132515 1.067177878 1.009390598 0.659660526 0.93519147 1 13.89703401 -3.722511061 0.715298126 1.17089095 4.56E-16 0.306719329 0.156297122 4.266734169 0.900000363 0.029777245 4.823910257 0.000189448 3.722511061 -1.17089095 NTDVAQS(ph)PEAPK ddPTM_HeLa_CUDC101_4h_R1 2 NTDVAQSPEAPK 12 0 A0A087WVV2;Q9P2E9-3;Q9P2E9;V9GY78 A0A087WVV2 RRBP1 Ribosome-binding protein 1 1 0 NTDVAQS(1)PEAPK;NTDVAQS(1)PEAPK ; 176.43 5.70E-16 33547000 10332.1 8716.8 9050.3 9298.3 6770.5 8545.3 7539.7 4985.5 9647.2 11401.2 TRUE FALSE FALSE 9120.9869 8985.354276 9539.586594 9677.524865 6271.053704 8382.31264 7830.508755 5553.029168 9249.538333 11333.38516 0.804789282 0.792821752 0.84172438 0.853895348 0.553325738 0.739612439 0.690924084 0.489970921 0.816132003 1 13.46829122 -3.72210479 0.111811061 1.148314619 1.86E-14 0.557816618 0.094068564 19.40325229 0.301671744 0.599644403 3.523836592 0.000189625 3.72210479 -1.148314619 VVEAVNSDS(ph)DSEFGIPK ddPTM_HeLa_CUDC101_4h_R1 1 VVEAVNSDSDSEFGIPK 17 0 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 0 VVEAVNS(0.398)DS(0.602)DSEFGIPK 168.47 5.96E-07 17033000 4475.6 4399 3910.8 3718 3720.8 3839.4 2773.9 2104.7 4040.7 4651.3 TRUE FALSE FALSE 3950.976953 4534.527976 4122.229678 3869.636111 3446.323997 3766.169842 2880.890252 2344.290541 3874.140636 4623.633861 0.854517696 0.98072817 0.891556252 0.83692529 0.745371303 0.814547595 0.623079236 0.507023396 0.837899529 1 12.17481144 -3.720808741 0.39586583 0.948560477 2.01E-17 0.820869764 0.060791665 2.218627274 0.1735184 0.016171375 1.088860888 0.000190192 3.720808741 -0.948560477 TSS(ph)PHSETQGWK ddPTM_HeLa_CUDC101_4h_R1 2 TSSPHSETQGWK 12 0 O75128-3;O75128;O75128-7;O75128-6;H7C1N2;J3KR05;O75128-2 O75128-3;H7C1N2 COBL Protein cordon-bleu 1 0 T(0.002)S(0.004)S(0.994)PHSETQGWK;T(0.132)S(0.022)S(0.846)PHSETQGWK ; 256.95 2.57E-69 52700000 6689.3 5169.4 5134.7 5051.5 6731 5227.4 5194.2 3228.7 6368.7 6181.5 TRUE FALSE FALSE 5905.190394 5328.663087 5412.297414 5257.522004 6234.46754 5127.696054 5394.542034 3596.242157 6106.17949 6144.732163 0.961016727 0.867192083 0.880802819 0.855614511 1.014603627 0.834486503 0.877913291 0.585256129 0.993725899 1 12.58513441 -3.720027207 0.903198064 0.958587469 6.83E-37 0.705813274 0.064456807 2.030763805 0.629800763 0.010551062 2.42355842 0.000190534 3.720027207 -0.958587469 AASVAAATT(ph)SPTPR ddPTM_HeLa_CUDC101_4h_R1 2 AASVAAATTSPTPR 14 0 Q9Y2D9 Q9Y2D9 ZNF652 Zinc finger protein 652 1 0 AASVAAAT(0.085)T(0.754)S(0.136)PT(0.025)PR;AASVAAAT(0.132)T(0.666)S(0.201)PT(0.001)PR ; 149.82 0.0011666 41258000 5690.9 5447.6 5474.7 4872.6 5277.7 4703.3 4123.7 3698.8 5693 6416.8 TRUE FALSE FALSE 5023.821329 5615.434099 5770.678842 5071.325689 4888.374586 4613.592389 4282.75249 4119.856441 5458.33213 6378.632588 0.787601615 0.880350768 0.904689016 0.795049036 0.766367167 0.723288624 0.671421724 0.645883955 0.855721356 1 12.63903147 -3.719182901 0.064832294 1.324865815 1.40E-17 0.676151277 0.059114706 53.98622955 0.477335625 2.796925821 8.135965716 0.000190905 3.719182901 -1.324865815 VAQGATEKS(ph)PEDK ddPTM_HeLa_CUDC101_4h_R1 4 VAQGATEKSPEDK 13 1 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 1 0 VAQGAT(0.002)EKS(0.998)PEDK;VAQGAT(0.364)EKS(0.636)PEDK;VAQGAT(0.001)EKS(0.999)PEDK;VAQGATEKS(1)PEDK ;;; 166.9 5.40E-05 133917100 8204.1 5326.41 7312.88 7468.25 5578.17 5233.68 5568.74 3866.8 7104.73 8556.1 TRUE FALSE FALSE 7242.427835 5490.510379 7708.236413 7772.837516 5166.679512 5133.856274 5783.528167 4306.980882 6811.870022 8505.207937 0.851528603 0.645546872 0.906296057 0.913891533 0.607472451 0.603613258 0.679998445 0.506393367 0.80090576 1 13.05413079 -3.717969798 0.155825233 1.070265695 4.28E-15 0.475871402 0.112985735 12.09105381 0.269655129 0.254021513 2.670191765 0.000191439 3.717969798 -1.070265695 LAS(ph)PMKPVPGTPPSS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 LASPMKPVPGTPPSSK 16 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 0 LAS(1)PMKPVPGT(0.01)PPS(0.465)S(0.524)K 74.584 0.027765 63743000 5668.9 4942.7 4476.2 4429 4531.5 4305.8 3230.7 2617.1 5294.7 5812.4 TRUE FALSE FALSE 5004.400135 5094.978728 4718.196912 4609.633764 4197.220273 4223.674039 3355.309181 2915.020085 5076.450225 5777.827586 0.866138711 0.88181564 0.816603964 0.797814351 0.726435708 0.731014205 0.580721583 0.504518358 0.878608811 1 12.49631144 -3.717370991 0.245097317 0.992425391 2.48E-16 0.916470621 0.040710162 1.948667843 0.075434846 0.023191672 0.611941179 0.000191703 3.717370991 -0.992425391 KVEAPETNIDKT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 KVEAPETNIDKTPK 14 2 O75152;E9PBY7;E9PQ61 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 KVEAPETNIDKT(1)PK 92.633 0.03335 71112000 4547.6 3973.2 3809.3 3305.7 3955.4 3912.1 3143.3 2103.1 4071.8 4057 TRUE FALSE FALSE 4014.537222 4095.609583 4015.242281 3440.520734 3663.618022 3837.483211 3264.538134 2342.508403 3903.958681 4032.868784 0.995454461 1.015557362 0.995629289 0.85311993 0.908439679 0.951551716 0.809482854 0.580854109 0.968035136 1 11.97759075 -3.71567653 0.714784988 0.992402936 8.31E-33 0.86084587 0.047274195 1.379785864 0.28860723 0.008033527 1.324330704 0.000192452 3.71567653 -0.992402936 AGIIAS(ph)AR ddPTM_HeLa_CUDC101_4h_R1 2 AGIIASAR 8 0 P13639 P13639 EEF2 Elongation factor 2 1 0 AGIIAS(1)AR;AGIIAS(1)AR ; 94.85 0.023559 16719600 5878.6 5017.7 4356.7 4393.6 5715.4 4887.8 4283.6 4082.9 4948.4 5131.6 TRUE FALSE FALSE 5189.519419 5172.28939 4592.23638 4572.789999 5293.786329 4794.573359 4448.819887 4547.680832 4744.424858 5101.077015 1.017337986 1.013960263 0.900248392 0.896436181 1.037778162 0.939913933 0.872133448 0.891513855 0.930082969 1 12.31658617 -3.714037914 0.299882607 1.013238751 0.717769624 0.188654813 0.052643127 7.346035889 0.375395422 0.02100259 0.843110464 0.00019318 3.714037914 -0.295469128 EDGGTVGVFS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 EDGGTVGVFSPK 12 0 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 0 EDGGT(0.29)VGVFS(0.71)PK;EDGGT(0.031)VGVFS(0.969)PK;EDGGT(0.009)VGVFS(0.991)PK ;; 124.42 0.0026259 72131000 8437.7 6909.3 6301.3 6823.3 7934.9 6791.9 6023.1 4191.3 8043.1 7193.2 TRUE FALSE FALSE 7448.645597 7122.167343 6641.967338 7101.583667 7349.558236 6662.355824 6255.412985 4668.42065 7711.560014 7150.414526 1.041708221 0.996049574 0.928892628 0.993170905 1.027850652 0.931743999 0.874832216 0.652888113 1.078477337 1 12.80381117 -3.710183852 0.9100531 1.011652695 5.66E-21 0.891402836 0.037875799 1.025333956 0.3175908 0.005436199 1.308061304 0.000194902 3.710183852 -1.011652695 ASS(ph)CETYEYPQR ddPTM_HeLa_CUDC101_4h_R1 1 ASSCETYEYPQR 12 0 Q9UQC2-2;Q9UQC2 Q9UQC2-2 GAB2 GRB2-associated-binding protein 2 1 0 AS(0.039)S(0.934)CET(0.027)YEYPQR 142.12 0.0011823 6811700 1182.8 1007.5 856.98 894.32 1053.6 1237.2 1179.7 1522.2 1496.6 949.29 TRUE FALSE FALSE 1044.153977 1038.539881 903.310931 930.7942352 975.8780271 1213.602471 1225.201424 1695.481095 1434.909515 943.6435809 1.106513093 1.100563711 0.957258598 0.986383264 1.034159556 1.286081415 1.298373082 1.796738864 1.520605389 1 9.882098239 -3.707363501 0.901961056 1.042074358 3.157680387 0.591698283 0.164891167 1.014574097 0.30858202 0.011201903 2.683592486 0.000196172 3.707363501 2.115606028 VHS(ph)PCPTSGSEK ddPTM_HeLa_CUDC101_4h_R1 2 VHSPCPTSGSEK 12 0 X6RLP6;Q96LT9-2;Q96LT9 X6RLP6 RNPC3 RNA-binding protein 40 1 0 VHS(1)PCPTSGSEK;VHS(1)PCPTSGSEK ; 104.09 0.005276 58491000 22522 12676.6 20467 19106 16169.8 15246.2 15394.1 10001.3 19109.6 13400.1 TRUE FALSE FALSE 19882.0053 13067.15102 21573.50793 19885.22526 14976.98607 14955.40414 15987.85559 11139.80757 18321.8942 13320.39561 1.49259871 0.980988208 1.619584625 1.492840442 1.124364959 1.122744742 1.200253811 0.836297051 1.37547673 1 13.70134931 -3.706824743 1.107436377 1.25731607 5.17E-19 0.287205086 0.207515446 6.245328276 2.612773613 0.036128942 12.36404437 0.000196415 3.706824743 -1.25731607 T(ph)LT(ph)IFMEYMPGGSVK ddPTM_HeLa_CUDC101_4h_R1 1 TLTIFMEYMPGGSVK 15 0 J3KRN4;J3QRB6;Q99759;Q99759-2 J3KRN4 MAP3K3 Mitogen-activated protein kinase kinase kinase 3 2 0 T(0.937)LT(0.947)IFMEY(0.028)MPGGS(0.088)VK 60.434 0.0027682 0 4771.7 3576.6 4066.8 3814.4 3781 4297.4 2900.2 1994.8 3993 5180 TRUE FALSE FALSE 4212.368559 3686.790807 4286.663509 3969.967719 3502.083163 4215.434255 3012.061685 2221.879969 3828.40685 5149.18913 0.818064447 0.715994444 0.832492923 0.770988911 0.680123234 0.818659822 0.584958449 0.431500944 0.743497035 1 12.33012955 -3.702350353 0.144763921 1.074467516 2.31E-16 0.465605616 0.1066338 11.60634098 0.23715869 0.261164215 2.415254927 0.000198449 3.702350353 -1.074467516 LVS(ph)PEQPPK ddPTM_HeLa_CUDC101_4h_R1 1 LVSPEQPPK 9 0 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;E9PII3;A0A2R8Y5B3 O43491 EPB41L2 Band 4.1-like protein 2 1 0 LVS(1)PEQPPK 123.62 0.0048267 33330000 4258.2 4369.4 4156 3791 4285 4392.6 4193.3 4837 4589.6 4287.1 TRUE FALSE FALSE 3759.060251 4504.016035 4380.685931 3945.613366 3968.904087 4308.818474 4355.036986 5387.624528 4400.414745 4261.600139 0.882077184 1.056883773 1.027943915 0.925852553 0.931317805 1.011079954 1.021925297 1.264225726 1.032573353 1 12.05717952 -3.700863809 1.225205981 0.95652102 1.985258882 0.672114056 0.056468306 2.137784802 1.025220945 0.009067847 3.903992734 0.00019913 3.700863809 1.028737862 DTVIIVS(ph)EPS(ph)EDEESQGLPTMAR ddPTM_HeLa_CUDC101_4h_R1 4 DTVIIVSEPSEDEESQGLPTMAR 23 0 D6RAY8;Q9H4L7;Q9H4L7-2 D6RAY8 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 DT(0.001)VIIVS(0.988)EPS(0.994)EDEES(0.011)QGLPT(0.005)MAR;DT(0.004)VIIVS(0.997)EPS(1)EDEESQGLPTMAR;DT(0.002)VIIVS(0.998)EPS(0.997)EDEES(0.003)QGLPTMAR;DT(0.001)VIIVS(0.999)EPS(0.999)EDEES(0.001)QGLPTMAR ;;; 137.9 6.70E-07 13524900 9799.5 7627.9 7087.4 7083 7555.5 8089.1 6236.76 4488.89 8947.8 7295.5 TRUE FALSE FALSE 8650.817465 7862.906558 7470.566282 7371.875355 6998.145818 7934.813895 6477.313922 4999.887093 8578.967897 7252.106042 1.192869687 1.084223881 1.030123696 1.016515108 0.964981176 1.094139254 0.893163156 0.689439325 1.18296228 1 12.82418431 -3.699160269 0.839944708 1.081807417 2.95E-16 0.740312943 0.071105494 2.346770947 0.629354175 0.013385815 2.944729443 0.000199912 3.699160269 -1.081807417 STS(ph)TPTSPGPR ddPTM_HeLa_CUDC101_4h_R1 1 STSTPTSPGPR 11 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BRB0;A0A0C4DGL7;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 1 0 S(0.188)T(0.01)S(0.801)T(0.001)PTSPGPR 150.46 0.00063785 52210000 3762.4 3505.5 3348 3939.1 4066.7 3259.7 3296 2207.6 3530.8 3926.4 TRUE FALSE FALSE 3321.377175 3613.5003 3529.003007 4099.753524 3766.707643 3197.526654 3423.127824 2458.904261 3385.25893 3903.045598 0.850970631 0.925815548 0.904166482 1.050398572 0.965068828 0.819238867 0.877040183 0.629996294 0.867337786 1 11.9303846 -3.69885396 1.090706605 0.934608764 7.06E-17 0.655494238 0.064229832 2.59424671 1.046481025 0.010943711 3.768640982 0.000200053 3.69885396 -0.934608764 KLS(ph)GDQPAAR ddPTM_HeLa_CUDC101_4h_R1 3 KLSGDQPAAR 10 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KLS(1)GDQPAAR;KLS(1)GDQPAAR;KLS(1)GDQPAAR ;; 68.171 0.036815 3652910000 19918.7 18049.1 19123.5 21598.8 21874.9 17951.2 18875.8 13207.8 20369.8 20766 TRUE FALSE FALSE 17583.86018 18605.17138 20157.37426 22479.69242 20261.23221 17608.81077 19603.84593 14711.32256 19530.14822 20642.48291 0.851828739 0.901304919 0.976499501 1.089001382 0.981530773 0.85303744 0.949684494 0.712672145 0.946114298 1 14.33332889 -3.697899789 1.635485978 0.941729221 1.81E-12 0.510854457 0.068378723 4.568251568 3.138678437 0.011739119 10.81968771 0.000200493 3.697899789 -0.941729221 AES(ph)GPDLR ddPTM_HeLa_CUDC101_4h_R1 1 AESGPDLR 8 0 P15924-2;P15924-3;P15924 P15924-2 DSP Desmoplakin 1 0 AES(1)GPDLR 91.265 0.027661 65176000 5709.1 5225.1 4910.4 5407.3 6152 5975.8 7670.5 9475 5246.7 5074.9 TRUE FALSE FALSE 5039.887952 5386.079138 5175.871077 5627.833066 5698.179217 5861.821571 7966.353754 10553.5957 5030.428805 5044.714269 0.999043292 1.06766783 1.025998858 1.115590054 1.129534581 1.16197296 1.579148655 2.092010595 0.997168231 1 12.30055684 -3.695311234 0.80126636 1.009049839 4.044820834 0.983648862 0.042783669 0.422246895 0.104371381 0.006833414 1.41405245 0.000201692 3.695311234 3.035770994 up MFPTGFSS(ph)PSPSAAAAAQEVR ddPTM_HeLa_CUDC101_4h_R1 2 MFPTGFSSPSPSAAAAAQEVR 21 0 A0A669KAX4;Q13620-1;A0A669KAU9 A0A669KAX4 CUL4B Cullin-4B 1 0 MFPT(0.084)GFS(0.136)S(0.551)PS(0.174)PS(0.055)AAAAAQEVR;MFPTGFS(0.019)S(0.912)PS(0.06)PS(0.01)AAAAAQEVR ; 138.07 6.37E-07 8047700 1390.67 1221.77 1221.72 1157.47 1124.96 1308.84 940.69 893.9 1482.67 1274.82 TRUE FALSE FALSE 1227.657771 1259.411286 1287.769879 1204.67663 1041.973942 1283.876058 976.9727284 995.6579627 1421.553715 1267.237314 0.968767063 0.993824339 1.01620262 0.950632227 0.822240578 1.013129935 0.770946939 0.785691797 1.121773877 1 10.30747101 -3.694760998 0.485683827 0.990225649 0.447394977 0.559649248 0.071994011 3.203758597 0.343525775 0.011380592 1.121161418 0.000201948 3.694760998 -0.542830672 AS(ph)TPDWVSEGPQPGLR ddPTM_HeLa_CUDC101_4h_R1 1 ASTPDWVSEGPQPGLR 16 0 Q8IVT2 Q8IVT2 MISP Mitotic interactor and substrate of PLK1 1 0 AS(0.5)T(0.5)PDWVSEGPQPGLR 164.66 2.85E-05 17621000 2027 1759.5 1535.1 1868 1678.3 1324.4 1385.8 882.79 1529.4 1980.2 TRUE FALSE FALSE 1789.398133 1813.708109 1618.092149 1944.185114 1554.495153 1299.139277 1439.25077 983.2832452 1466.357485 1968.421682 0.909052237 0.921402221 0.822025161 0.987687309 0.789716536 0.65999033 0.731169943 0.499528762 0.74494073 1 10.9428236 -3.693441821 0.370932306 0.971620252 1.51E-18 0.594083053 0.094429517 2.380509575 0.165490837 0.018029374 1.123288332 0.000202562 3.693441821 -0.971620252 S(ph)PGAPGPLTLK ddPTM_HeLa_CUDC101_4h_R1 2 SPGAPGPLTLK 11 0 Q15942-2;Q15942;H0Y2Y8;C9JJK5 Q15942-2 ZYX Zyxin 1 0 S(1)PGAPGPLTLK;S(1)PGAPGPLTLK ; 122.34 0.0037351 829850000 6982.9 6350.3 5177.2 5411.5 6251.6 5629.6 5334.5 3228.67 6225.8 6214.8 TRUE FALSE FALSE 6164.375047 6545.945216 5457.095092 5632.20436 5790.431923 5522.22476 5540.253452 3596.208742 5969.169889 6177.834093 0.997821397 1.05958579 0.883334678 0.911679446 0.937291587 0.893877154 0.896795441 0.582114814 0.966223728 1 12.59288541 -3.69281326 0.79719445 0.989556287 7.98E-49 0.799637868 0.0549439 1.664208552 0.406732483 0.008740738 1.808356985 0.000202855 3.69281326 -0.989556287 VAAETQSPS(ph)LFGSTK ddPTM_HeLa_CUDC101_4h_R1 2 VAAETQSPSLFGSTK 15 0 Q9UKX7;Q9UKX7-2 Q9UKX7 NUP50 Nuclear pore complex protein Nup50 1 0 VAAETQS(0.231)PS(0.769)LFGSTK;VAAET(0.021)QS(0.226)PS(0.753)LFGSTK ; 161.94 5.09E-05 84042000 9553.1 7409.2 7495.9 7537.5 8093.4 8079.7 6661 3880.2 9305.6 10272.7 TRUE FALSE FALSE 8433.3001 7637.46867 7901.151028 7844.91183 7496.366006 7925.593184 6917.917001 4321.906284 8922.019229 10211.59752 0.82585512 0.747921043 0.773742895 0.76823551 0.73410316 0.776136463 0.67745688 0.423235079 0.873714344 1 13.31792096 -3.691478868 0.117021849 1.137912863 8.42E-14 0.696489477 0.077212166 15.87828428 0.256709578 0.459608195 2.950665604 0.00020348 3.691478868 -1.137912863 TANS(ph)PGSGARPDPVR ddPTM_HeLa_CUDC101_4h_R1 2 TANSPGSGARPDPVR 15 1 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 0 TANS(0.87)PGS(0.13)GARPDPVR;TANS(0.94)PGS(0.06)GARPDPVR ; 127.2 0.0037624 33426000 4939 4391.4 4591.4 4723.5 4276.4 4190.1 3859.6 2552.3 4580 4632 TRUE FALSE FALSE 4360.057907 4526.693829 4839.624972 4916.144747 3960.938492 4110.180824 4008.466065 2842.843515 4391.210461 4604.448658 0.946922907 0.983113108 1.05107589 1.067694552 0.860241646 0.892654285 0.870563744 0.617412361 0.953688658 1 12.1688127 -3.689687067 0.842865461 0.982889225 3.69E-21 0.805223704 0.053938898 1.751681957 0.466764394 0.008822981 2.012673104 0.000204321 3.689687067 -0.982889225 S(ph)IELEHFEER ddPTM_HeLa_CUDC101_4h_R1 2 SIELEHFEER 10 0 G5E9L9;Q8N568-2;Q8N568;A0A0U1RR70;Q8N568-3 G5E9L9 DCLK2 Serine/threonine-protein kinase DCLK2 1 0 S(1)IELEHFEER;S(1)IELEHFEER ; 119.39 0.0032028 8657300 3703.8 3709.6 3386.5 3128.6 3714.9 3214.1 3028.6 2040.8 3766.7 3554.7 TRUE FALSE FALSE 3269.646179 3823.888379 3569.584434 3256.197831 3440.859228 3152.796398 3145.414117 2273.116423 3611.435032 3533.556486 0.92531312 1.082164214 1.010195945 0.921507225 0.973766584 0.892244516 0.890155323 0.643294208 1.022039706 1 11.78690526 -3.689580545 0.994723078 0.974060057 1.26E-13 0.814011201 0.049135987 1.695840275 0.586228401 0.007693783 2.323698332 0.000204371 3.689580545 -0.974060057 MELAGSNTTASS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 1 MELAGSNTTASSPAR 15 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 MELAGS(0.001)NT(0.007)T(0.004)AS(0.306)S(0.683)PAR 116.87 0.0012458 9291200 1794.5 1656.7 1327.3 1482.7 1702.8 1729.8 1222.6 975.61 2249.9 1749.8 TRUE FALSE FALSE 1584.15143 1707.740963 1399.057853 1543.170915 1577.187836 1696.806947 1269.756092 1086.669499 2157.15817 1739.392112 0.910750037 0.981803328 0.804337241 0.887189786 0.906746573 0.975517214 0.729999914 0.624740961 1.240179345 1 10.76436748 -3.687876684 0.812583489 0.945764866 2.83E-13 0.495434653 0.112735374 2.227323411 0.558207224 0.010934903 2.366906339 0.000205174 3.687876684 -0.945764866 IVNHWAS(ph)PELR ddPTM_HeLa_CUDC101_4h_R1 1 IVNHWASPELR 11 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0 O15027 SEC16A Protein transport protein Sec16A 1 0 IVNHWAS(1)PELR 110.55 0.0043842 16998000 6775.3 5694.1 5363.4 5702.6 5526.4 5571.3 4784.8 3400.8 5777 5209 TRUE FALSE FALSE 5981.109605 5869.528472 5653.361627 5935.176677 5118.728482 5465.036735 4969.351339 3787.933325 5538.869615 5178.016636 1.155096637 1.133547627 1.091800592 1.14622588 0.988550026 1.055430509 0.959701694 0.731541359 1.06968942 1 12.33818389 -3.686201395 1.005297406 1.082965033 4.33E-09 0.813273642 0.05157597 2.086294481 0.729110557 0.010327462 3.222087972 0.000205967 3.686201395 -1.082965028 TCPS(ph)LSPTSPLNNK ddPTM_HeLa_CUDC101_4h_R1 1 TCPSLSPTSPLNNK 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 0 T(0.098)CPS(0.396)LS(0.237)PT(0.087)S(0.182)PLNNK 159.58 5.20E-05 17400000 6949.9 6320.1 6567.4 5968.5 6042.7 5363.3 5174.5 3564.7 5894.9 4993.7 TRUE FALSE FALSE 6135.243257 6514.81479 6922.453509 6211.921228 5596.94206 5261.003988 5374.082198 3970.491039 5651.909727 4963.99725 1.235948158 1.312413054 1.3945321 1.251394978 1.127507083 1.059832172 1.08261184 0.799857623 1.13858035 1 12.2772866 -3.684503279 1.111005299 1.160193136 3.43E-05 0.519532952 0.112047807 4.511360721 1.824234721 0.022025437 8.375739363 0.000206774 3.684503279 -1.160158876 S(ph)PLHIKDDVLPK ddPTM_HeLa_CUDC101_4h_R1 1 SPLHIKDDVLPK 12 1 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 S(1)PLHIKDDVLPK 70.272 0.031182 66812000 2476.1 1862 1675.3 1997.6 1644 1708.8 1541.1 971.22 1733.3 1971.1 TRUE FALSE FALSE 2185.855312 1919.366013 1765.871786 2079.070762 1522.725395 1676.207487 1600.540743 1081.779759 1661.85264 1959.37581 1.115587577 0.979580336 0.901242006 1.061088308 0.777148206 0.855480342 0.816862562 0.552104274 0.848154107 1 10.93617842 -3.681862284 0.433169659 1.052925837 8.45E-16 0.576633262 0.099874121 2.680823448 0.236475166 0.019352167 1.616911762 0.000208036 3.681862284 -1.052925837 LNQSS(ph)PDNVTDTK ddPTM_HeLa_CUDC101_4h_R1 1 LNQSSPDNVTDTK 13 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 LNQS(0.014)S(0.986)PDNVTDTK 93.243 0.0142 25779000 2903.2 2866.9 2671.7 2280.1 2811.4 2631.7 2274.7 1935.4 2752.3 2711.9 TRUE FALSE FALSE 2562.891297 2955.225791 2816.140183 2373.092333 2604.008623 2581.504707 2362.435941 2155.718113 2638.849029 2695.769498 0.950708619 1.096245726 1.044651698 0.88030239 0.965961157 0.957613293 0.876349385 0.799667076 0.978885261 1 11.39648143 -3.679482339 0.703969792 0.986748547 0.477469286 0.585734342 0.052535197 3.340314785 0.655738901 0.009222963 1.638939153 0.000209179 3.679482339 -0.509279261 DTQSPS(ph)TCSEGLLGWSQK ddPTM_HeLa_CUDC101_4h_R1 1 DTQSPSTCSEGLLGWSQK 18 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DT(0.002)QS(0.012)PS(0.67)T(0.285)CS(0.03)EGLLGWSQK 168.64 3.47E-07 11914000 4197.4 3757.8 3014.6 3054.6 3552.4 3108.9 2802.4 1910.7 3703.4 3082 TRUE FALSE FALSE 3705.387135 3873.573364 3177.578395 3179.179791 3290.346529 3049.602912 2910.489507 2128.206365 3550.744284 3063.668127 1.209461006 1.264358019 1.037181008 1.037703713 1.073989216 0.995409028 0.950001562 0.694659564 1.158984635 1 11.58104431 -3.678341206 0.784011761 1.107076262 4.60E-20 0.735641673 0.077171686 2.785561072 0.651299749 0.015876008 3.343790869 0.000209729 3.678341206 -1.107076262 SPS(ph)PPDGSPAATPEIR ddPTM_HeLa_CUDC101_4h_R1 3 SPSPPDGSPAATPEIR 16 0 O00499-6;O00499-11;O00499-2;O00499;O00499-9;O00499-10;O00499-7;O00499-8;O00499-4;O00499-3;O00499-5 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 S(0.016)PS(0.895)PPDGS(0.088)PAATPEIR;S(0.007)PS(0.993)PPDGSPAATPEIR;S(0.382)PS(0.566)PPDGS(0.044)PAAT(0.008)PEIR ;; 252.01 4.59E-56 709895000 3150.06 2956.17 2693.94 2411.98 3124.9 2932.93 2799.55 2958.16 2822.96 2824.19 TRUE FALSE FALSE 2780.814742 3047.246094 2839.582545 2510.35097 2894.382353 2876.989247 2907.529581 3294.904977 2706.596394 2807.391592 0.990533259 1.085436781 1.011466499 0.894193378 1.030986329 1.024790861 1.035669405 1.173653503 0.964096495 1 11.4550146 -3.678299344 1.208596795 0.9985585 1.604988797 0.562406003 0.046098413 2.820312812 1.270135348 0.006480621 3.029725315 0.000209749 3.678299344 0.606430297 EEQMKEGEET(ph)EGSEEDDKENDKT(ph)EEMPNDSVLENK ddPTM_HeLa_CUDC101_4h_R1 1 EEQMKEGEETEGSEEDDKENDKTEEMPNDSVLENK 35 3 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 2 0 EEQMKEGEET(0.706)EGS(0.287)EEDDKENDKT(0.923)EEMPNDS(0.084)VLENK 41.933 0.012625 18995000 1217.6 1224.2 1044.9 908.04 1148.7 1150.3 923.25 610.57 1277.6 1235.1 TRUE FALSE FALSE 1074.874774 1261.916151 1101.390455 945.0737961 1063.96269 1128.359944 958.8600618 680.0748208 1224.936787 1227.75357 0.875480878 1.027825275 0.897077786 0.76975854 0.866593032 0.919044319 0.780987394 0.553918015 0.997705742 1 10.2618053 -3.674733402 0.719032516 0.935648641 9.57E-63 0.710146634 0.072063309 2.620447752 0.529968978 0.013022673 2.421290932 0.000211479 3.674733402 -0.935648641 ATT(ph)PSLPSVDNEFK ddPTM_HeLa_CUDC101_4h_R1 2 ATTPSLPSVDNEFK 14 0 A0A087WU78;A0A087WWC4;Q6T4R5-4;Q6T4R5-3;Q6T4R5-2;Q6T4R5 A0A087WU78 NHS Nance-Horan syndrome protein 1 0 AT(0.014)T(0.984)PS(0.002)LPSVDNEFK;AT(0.011)T(0.972)PS(0.017)LPSVDNEFK ; 183.28 3.44E-10 25396000 7170.9 6335.7 5778.5 5925.1 6195.7 5422.3 4507.3 3318.5 6310.2 6960.5 TRUE FALSE FALSE 6330.337972 6530.895407 6090.903189 6166.751188 5738.655555 5318.878662 4681.148071 3696.264626 6050.090885 6919.098636 0.914907896 0.943893959 0.880302986 0.891265107 0.829393517 0.768724214 0.676554609 0.534211871 0.874404486 1 12.75636839 -3.673960344 0.404694734 0.970035907 1.33E-19 0.924348245 0.036083749 1.022913857 0.080574457 0.007051894 0.529833346 0.000211855 3.673960344 -0.970035907 DGVLTLANNVT(ph)PAKDVPPLSETEATPVPIK ddPTM_HeLa_CUDC101_4h_R1 1 DGVLTLANNVTPAKDVPPLSETEATPVPIK 30 1 E7EVA0;P27816;P27816-6 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DGVLTLANNVT(0.999)PAKDVPPLSETEATPVPIK 104.89 9.81E-10 13685000 5160.7 4638.2 4028.6 3537.9 3757.7 3960.1 3031.8 2500.7 4535.1 5222.8 TRUE FALSE FALSE 4555.770569 4781.097444 4246.398302 3682.190854 3480.501957 3884.56769 3148.737542 2785.36958 4348.161258 5191.734553 0.877504526 0.920905604 0.817915142 0.709240971 0.670392895 0.748221553 0.606490472 0.536500769 0.837516097 1 12.34200091 -3.673266195 0.197408929 1.032257365 5.87E-13 0.781652971 0.064302339 3.723528976 0.107762801 0.056576986 0.986073962 0.000212194 3.673266195 -1.032257365 NTASQNS(ph)ILEEGETK ddPTM_HeLa_CUDC101_4h_R1 2 NTASQNSILEEGETK 15 0 Q15398-1;Q15398;Q15398-3 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 NTASQNS(1)ILEEGETK;NTAS(0.001)QNS(0.964)ILEEGET(0.035)K ; 237.34 2.16E-43 17410700 9184.2 7722.5 7115.6 7352.6 7792.8 7702.4 6561.9 4153.32 8371.8 8330.5 TRUE FALSE FALSE 8107.641998 7960.421072 7500.29086 7652.470809 7217.940669 7555.489553 6814.994681 4626.117161 8026.710861 8280.949816 0.979071505 0.961293239 0.905728331 0.924105444 0.871631978 0.912394076 0.822972586 0.558645719 0.969298334 1 13.01558054 -3.671465222 0.656303507 0.980029622 2.35E-40 0.892919134 0.039801411 1.348863911 0.233952468 0.00725368 1.183397964 0.000213076 3.671465222 -0.980029622 S(ph)PPPGPDGHAK ddPTM_HeLa_CUDC101_4h_R1 3 SPPPGPDGHAK 11 0 P57081-3;P57081-2;P57081 P57081-3 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 0 S(1)PPPGPDGHAK;S(1)PPPGPDGHAK;S(1)PPPGPDGHAK ;; 124.51 0.0020945 48420600 12635.3 6923 12667.3 13050.1 9420.5 8973.7 9578.2 5349.8 12017.3 12452.7 TRUE FALSE FALSE 11154.20929 7136.289424 13352.13255 13582.33949 8725.568483 8802.541624 9947.634382 5958.799607 11521.94181 12378.63079 0.90108587 0.576500709 1.078643736 1.09724086 0.704889631 0.711107858 0.803613465 0.481377925 0.930792913 1 13.59556412 -3.670331895 0.479195564 0.946416552 1.62E-22 0.382158062 0.155946194 5.570934774 0.574293823 0.033434127 3.369442477 0.000213633 3.670331895 -0.946416552 HDS(ph)PDLAPNVTYSLPR ddPTM_HeLa_CUDC101_4h_R1 5 HDSPDLAPNVTYSLPR 16 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 0 HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR ;;;; 193.3 3.73E-15 170376000 12904.02 10867.11 9877.12 11133.92 11989.15 12916.93 11791.26 13421.22 12829.24 12611.88 TRUE FALSE FALSE 11391.43034 11201.91278 10411.10698 11588.00938 11104.73429 12670.56108 12246.05285 14949.03743 12300.4133 12536.86398 0.908634756 0.893517932 0.830439495 0.924314837 0.885766513 1.010664318 0.976803519 1.192406447 0.981139567 1 13.61388889 -3.667427046 1.250285892 0.936359493 1.860195873 0.6965752 0.052122318 2.79279512 1.288479283 0.008970247 4.789214084 0.000215067 3.667427046 0.923836381 LLS(ph)SNEDDANILSSPTDR ddPTM_HeLa_CUDC101_4h_R1 2 LLSSNEDDANILSSPTDR 18 0 H0YEG1;F5GY88;A0A0B4J1W0;O75448-2;O75448 H0YEG1 MED24 Mediator of RNA polymerase II transcription subunit 24 1 0 LLS(0.776)S(0.224)NEDDANILSSPTDR;LLS(0.828)S(0.172)NEDDANILSSPTDR ; 219.87 6.63E-33 21613200 907.5 734.99 628.17 654.98 1044.54 1422.89 1900.95 3704.7 618.56 805.37 TRUE FALSE FALSE 801.1242257 757.6341707 662.1307703 681.6929155 967.4863652 1395.750744 1974.270278 4126.428073 593.062695 800.5796234 1.00068026 0.94635705 0.827064231 0.851499208 1.208482376 1.743425267 2.466051122 5.15430065 0.740791644 1 9.644901086 -3.666245115 0.954506169 0.970215035 13.9011514 0.989095982 0.13453441 0.325487804 0.102015959 0.018642289 5.715099136 0.000215653 3.666245115 12.93093636 up NQLVT(ph)PEPTSR ddPTM_HeLa_CUDC101_4h_R1 2 NQLVTPEPTSR 11 0 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 NQLVT(0.895)PEPT(0.102)S(0.003)R;NQLVT(0.984)PEPT(0.016)SR ; 129.76 0.010285 48257000 4132.2 3421.1 4005.5 3630.3 3668.1 3161.6 3007.7 1982.01 3928.6 4083.2 TRUE FALSE FALSE 3647.82978 3526.500036 4222.049446 3778.359325 3397.511571 3101.297748 3123.707997 2207.634007 3766.661445 4058.912945 0.898720872 0.868828695 1.040192166 0.930879617 0.837049628 0.764071018 0.769592263 0.543897846 0.927997594 1 11.98687768 -3.665715127 0.534967149 0.955987438 3.37E-21 0.832337825 0.055100463 2.061699515 0.253728653 0.011714368 1.418158234 0.000215916 3.665715127 -0.955987438 SLPTTVPES(ph)PNYR ddPTM_HeLa_CUDC101_4h_R1 3 SLPTTVPESPNYR 13 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 0 SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR ;; 274.38 7.39E-86 2186910000 8539.1 7611.4 6930.9 7045.7 8189.6 7174.8 6427.8 4450.2 8138.2 7862 TRUE FALSE FALSE 7538.159642 7845.898212 7305.605419 7333.0541 7585.469524 7037.952644 6675.722399 4956.79278 7802.739951 7815.236474 0.964546584 1.003923328 0.934790066 0.938302267 0.970600128 0.900542507 0.85419327 0.634247319 0.998401005 1 12.93207381 -3.664913994 0.848426346 0.979336345 6.33E-18 0.948987271 0.023801401 0.829551234 0.216382727 0.003864474 0.966705175 0.000216315 3.664913994 -0.979336345 TTVISAVGTIVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 TTVISAVGTIVKK 13 1 J3QQJ0;Q9UHR5-2;Q9UHR5 J3QQJ0 SAP30BP SAP30-binding protein 0 1 TTVISAVGTIVK(1)K 227.37 1.70E-76 0 355.57 322.19 309.14 191.88 402.72 403.05 426.75 548.66 309.32 260.83 FALSE TRUE FALSE 313.8906236 332.116292 325.8530435 199.7056958 373.0121479 395.3624928 443.2098905 611.1172366 296.5696987 259.2785716 1.210630797 1.280924567 1.256768122 0.770236023 1.438653976 1.524856028 1.70939653 2.356990911 1.143826491 1 8.018359167 -2.815913616 0.585583014 1.100480834 8.53005555 0.841354229 0.1648012 4.317035717 0.275388871 0.030456381 31.92564131 0.00152787 2.815913616 7.429574716 up S(ph)LQQLAEER ddPTM_HeLa_CUDC101_4h_R1 2 SLQQLAEER 9 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 S(1)LQQLAEER;S(1)LQQLAEER ; 125.61 0.0043466 17590300 1093.92 853.58 769.25 928.58 717.35 1049.67 869.64 929.27 786.76 908.5 TRUE FALSE FALSE 965.6923559 879.8777881 810.8379819 966.4515061 664.4325197 1029.649294 903.1823061 1035.054341 754.3294198 903.0962016 1.069312831 0.97429021 0.897842312 1.070153439 0.735727289 1.14013246 1.000095344 1.146117478 0.835270283 1 9.818735868 -3.663956096 1.474189822 1.006930088 1.577526991 0.096319912 0.119138518 9.538782299 5.344526514 0.014670933 12.35859803 0.000216792 3.663956096 0.570596903 SESDLSQPES(ph)DEEGYALSGR ddPTM_HeLa_CUDC101_4h_R1 3 SESDLSQPESDEEGYALSGR 20 0 Q15751;H0YNB1 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 SESDLSQPES(1)DEEGYALSGR;SESDLS(0.001)QPES(0.999)DEEGYALSGR;S(0.004)ES(0.123)DLS(0.002)QPES(0.871)DEEGYALSGR ;; 267.93 1.92E-106 11385600 3966.71 2848.79 2366.64 2937.24 3322.2 3205.82 2224.07 1739.86 2588.35 3165 TRUE FALSE FALSE 3501.738267 2936.557843 2494.587717 3057.033343 3077.127925 3144.674325 2309.853125 1937.91863 2481.657117 3146.174439 1.113014658 0.933374134 0.792895551 0.97166683 0.978053819 0.999523194 0.734178339 0.615960325 0.788785608 1 11.61938295 -3.663303463 0.569472211 1.031981547 2.20E-28 0.334661964 0.117953318 3.211237603 0.437260933 0.019040964 2.551503246 0.000217118 3.663303463 -1.031981547 KPS(ph)TSDDSDSNFEK ddPTM_HeLa_CUDC101_4h_R1 1 KPSTSDDSDSNFEK 14 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 KPS(0.955)T(0.042)S(0.004)DDSDSNFEK 112.03 0.0063071 9751000 3082 2410 2308.6 2400.2 2626 2262.9 1972.2 1223.4 2193.9 2896.8 TRUE FALSE FALSE 2720.732632 2484.249243 2433.409899 2498.090531 2432.285212 2219.738953 2048.268415 1362.666911 2103.466513 2879.569705 0.944839997 0.86271544 0.845060252 0.86752216 0.844669677 0.770857864 0.711310586 0.473218936 0.730479457 1 11.49163753 -3.66098926 0.35821796 0.982775031 6.25E-21 0.57855753 0.090321853 1.87675229 0.121497176 0.014229262 0.868039312 0.000218278 3.66098926 -0.982775031 QGSPDQVS(ph)PVSEMTSTSLYQDK ddPTM_HeLa_CUDC101_4h_R1 1 QGSPDQVSPVSEMTSTSLYQDK 22 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QGS(0.069)PDQVS(0.899)PVS(0.02)EMT(0.009)S(0.001)TSLYQDK 53.444 0.02039 13065000 2414.8 2044.3 2174.8 1990.3 2615.3 2845.2 2669.5 3397.4 2309.2 2665.6 TRUE FALSE FALSE 2131.740805 2107.28246 2292.376266 2071.473037 2422.374529 2790.93255 2772.463509 3784.146283 2214.013799 2649.744893 0.80450794 0.795277487 0.865130931 0.781763196 0.914191602 1.053283491 1.04631337 1.42811721 0.835557342 1 11.37163775 -3.659921643 0.944906628 0.885736822 2.544611637 0.842256565 0.073875008 2.019851443 0.617703506 0.014640768 4.511384124 0.000218816 3.659921643 1.658874816 TSPVTASDPAGPSYAAATLQASSAASSAS(ph)PVSR ddPTM_HeLa_CUDC101_4h_R1 2 TSPVTASDPAGPSYAAATLQASSAASSASPVSR 33 0 F5H8D7;P18887;M0QYS5;M0R1U8 F5H8D7 XRCC1 DNA repair protein XRCC1 1 0 TSPVTASDPAGPSYAAATLQASSAAS(0.014)S(0.118)AS(0.631)PVS(0.237)R;TSPVTASDPAGPSYAAATLQASS(0.001)AAS(0.026)S(0.145)AS(0.582)PVS(0.245)R ; 100.79 1.57E-12 39078000 5118.4 5099.1 4479.6 4077.4 5545.5 4792.3 3762.3 2912.5 5685.6 5370 TRUE FALSE FALSE 4518.428911 5256.197227 4721.780726 4243.693996 5136.419513 4700.894862 3907.413171 3244.047227 5451.237162 5338.059001 0.846455408 0.984664506 0.884550119 0.794988215 0.962226066 0.880637487 0.731991379 0.607720377 1.021202119 1 12.38209954 -3.65788913 0.760778827 0.924686649 1.04E-13 0.702009368 0.068123714 2.596194773 0.564721651 0.011899439 2.537887916 0.000219842 3.65788913 -0.924686649 GGKDPLS(ph)SPGGPGSR ddPTM_HeLa_CUDC101_4h_R1 1 GGKDPLSSPGGPGSR 15 1 B7WPE2;Q32P44;G3V1D0;H0Y3M3;Q32P44-2 B7WPE2 EML3 Echinoderm microtubule-associated protein-like 3 1 0 GGKDPLS(0.499)S(0.499)PGGPGS(0.002)R 83.792 0.0092765 36947000 6273 5048.1 5672.1 5542.3 6235.8 5190.2 5347.8 3843.2 5056.6 5502.9 TRUE FALSE FALSE 5537.688449 5203.625978 5978.750883 5768.33895 5775.797457 5091.205582 5554.066437 4280.694353 4848.164808 5470.168506 1.012343302 0.951273434 1.092973804 1.054508457 1.055871945 0.930721892 1.015337358 0.782552557 0.886291675 1 12.41736956 -3.657042099 1.556969839 1.012356256 1.48E-19 0.515907198 0.061351332 2.724680448 1.590467029 0.006455519 6.736380404 0.000220271 3.657042099 -1.012356256 SS(ph)PNPFVGS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 1 SSPNPFVGSPPK 12 0 P98082-3;P98082 P98082-3 DAB2 Disabled homolog 2 2 0 S(0.449)S(0.551)PNPFVGS(1)PPK 143.28 0.011026 38397000 5593.5 5531.5 3847.3 4628.6 4954.4 5070.3 4290.6 2944.3 5046.4 5235.2 TRUE FALSE FALSE 4937.838409 5701.918959 4055.296675 4817.374315 4588.923783 4973.592475 4456.089879 3279.467211 4838.385256 5204.060798 0.948843336 1.095667245 0.779256206 0.925695241 0.881796728 0.955713753 0.856271679 0.630174654 0.929732654 1 12.3454221 -3.654057528 0.897767878 0.964759213 4.65E-45 0.572805596 0.078689597 2.77411561 0.778439575 0.011894054 3.409554688 0.00022179 3.654057528 -0.964759213 LNTVAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 LNTVASPK 8 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 0 LNT(0.007)VAS(0.993)PK;LNTVAS(1)PK;LNTVAS(1)PK ;; 121.29 0.0072181 120576000 13418.3 11070.4 10497.8 11704 9595.7 10384.7 9084.5 6278.4 11209.6 9823.2 TRUE FALSE FALSE 11845.42721 11411.4659 11065.34282 12181.33971 8887.844328 10186.62915 9434.892208 6993.107678 10747.53554 9764.77117 1.213077809 1.168636285 1.133190182 1.247478256 0.91019484 1.043202034 0.966217441 0.716156841 1.100643871 1 13.25337052 -3.652317008 0.798507875 1.113828769 4.75E-17 0.653577963 0.089206562 3.229653585 0.753754002 0.017110439 4.021259363 0.000222681 3.652317008 -1.113828769 LTLNS(ph)PIFDKPLSR ddPTM_HeLa_CUDC101_4h_R1 2 LTLNSPIFDKPLSR 14 1 E5RJM2;E5RGN0;A0A087WZU2;Q00536;Q00536-3;Q00536-2;E5RIY8;H0YBX5;E5RIU4 E5RJM2 CDK16 Cyclin-dependent kinase 16 1 0 LTLNS(1)PIFDKPLSR;LT(0.052)LNS(0.944)PIFDKPLS(0.004)R ; 154.81 0.00050979 117651000 5836.1 4839.6 4763.9 4287.2 5383.4 4509 4207.2 2860.21 5396 4767.7 TRUE FALSE FALSE 5152.001205 4988.70234 5021.450844 4462.050547 4986.277307 4422.998338 4369.473113 3185.804745 5173.574596 4739.341508 1.087071104 1.05261508 1.059525007 0.941491669 1.052103398 0.933251662 0.921957851 0.67220409 1.091623085 1 12.21047091 -3.650692209 0.836023584 1.039865552 9.58E-19 0.85968374 0.04477566 1.514264234 0.379004531 0.007254843 1.854077901 0.000223516 3.650692209 -1.039865552 GLNNDS(ph)PERR ddPTM_HeLa_CUDC101_4h_R1 3 GLNNDSPERR 10 1 G5EA48;Q7Z6B7-2;Q7Z6B7 G5EA48 SRGAP1 SLIT-ROBO Rho GTPase-activating protein 1 1 0 GLNNDS(1)PERR;GLNNDS(1)PERR;GLNNDS(1)PERR ;; 101.56 0.0077663 123393000 12449.6 10152.6 12869.3 11953.4 12081.6 11273.2 11318.4 8221.4 12635.8 12343.4 TRUE FALSE FALSE 10990.27676 10465.38957 13565.05329 12440.91132 11190.36444 11058.18249 11754.95448 9157.290944 12114.94698 12269.98091 0.895704471 0.852926313 1.105548035 1.013930781 0.912011561 0.901238769 0.958025491 0.746316642 0.987364778 1 13.58284538 -3.648573622 1.58482622 0.954144112 3.92E-12 0.445867409 0.06995414 5.228202166 3.036098264 0.01069432 12.53612704 0.000224609 3.648573622 -0.954144112 NDKS(ph)EEEQSSSSVKK ddPTM_HeLa_CUDC101_4h_R1 2 NDKSEEEQSSSSVKK 15 2 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2D6;G3V2Q1;P07910-4;B4DY08;G3V4W0;G3V5V7 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 NDKS(1)EEEQSSSSVKK;NDKS(1)EEEQSSSSVKK ; 169.25 6.79E-07 56420200 6882.8 4575.8 6854.7 7830.5 5584.3 5526.1 5977.5 3806.6 7268.4 6348.8 TRUE FALSE FALSE 6076.008618 4716.774974 7225.285816 8149.861636 5172.357314 5420.69885 6208.054177 4239.927957 6968.793476 6311.037055 0.962759142 0.747385086 1.14486506 1.291366469 0.819573276 0.858923629 0.983682099 0.671827454 1.104223191 1 12.62366138 -3.647373742 1.09148592 0.985912343 3.84E-14 0.274848581 0.153542473 6.052230076 2.236791815 0.022083386 9.547771437 0.00022523 3.647373742 -0.985912343 SSQSEGIFLGSES(ph)DEDSVR ddPTM_HeLa_CUDC101_4h_R1 1 SSQSEGIFLGSESDEDSVR 19 0 Q9BYW2;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 0 SSQSEGIFLGS(0.012)ES(0.988)DEDSVR 212.65 2.15E-24 13086000 839.59 782.49 693.78 678.15 743.12 655.7 597.51 416.19 784.73 699.74 TRUE FALSE FALSE 741.1745329 806.5975894 731.2878454 705.8078882 688.3015181 643.193615 620.5561609 463.5673873 752.3830973 695.5779154 1.065552135 1.159607819 1.051338505 1.014707156 0.989539062 0.924689529 0.892144715 0.66644926 1.081666167 1 9.442068317 -3.645953402 0.75134587 1.042956856 1.51E-17 0.873171436 0.045826329 1.6615316 0.349491176 0.008388346 1.814911568 0.000225968 3.645953402 -1.042956856 SASSASSLFSPS(ph)STLFSSSR ddPTM_HeLa_CUDC101_4h_R1 1 SASSASSLFSPSSTLFSSSR 20 0 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2;E9PR38;Q14671-4;H0YDK8 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 SASSAS(0.003)S(0.003)LFS(0.336)PS(0.547)S(0.1)T(0.011)LFSSSR 223.93 1.13E-33 39243000 2442.3 1819 1504.4 1737.7 1879.8 1860.3 1581.8 853.31 2391.5 1978.3 TRUE FALSE FALSE 2156.017296 1875.041234 1585.732415 1808.570917 1741.130899 1824.817877 1642.810556 950.4473612 2292.921358 1966.532984 1.096354505 0.953475609 0.806359429 0.919674845 0.885380979 0.927936573 0.835384186 0.483311172 1.165971472 1 10.94143867 -3.645809172 0.455000051 1.032511338 5.61E-21 0.689149603 0.098096045 3.368206064 0.313986918 0.021908545 2.114413294 0.000226043 3.645809172 -1.032511338 LNSEASPS(ph)REAINGQR ddPTM_HeLa_CUDC101_4h_R1 2 LNSEASPSREAINGQR 16 1 Q13111;Q13111-3;Q13111-2;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 0 LNSEAS(0.028)PS(0.972)REAINGQR;LNSEAS(0.185)PS(0.814)REAINGQR ; 118.21 0.0029038 36132000 4685.6 5774.4 5486.3 5037.3 6227.7 5901 5627 6038.1 5919.6 7057 TRUE FALSE FALSE 4136.361071 5952.30242 5782.905973 5242.742867 5768.294978 5788.448257 5844.035275 6725.452897 5675.591582 7015.02465 0.589643127 0.848507698 0.824360036 0.747359151 0.822277222 0.825150095 0.83307409 0.958721207 0.809062244 1 12.77623246 -3.643437591 1.243281044 0.803574856 1.392865908 0.182100435 0.095196398 11.76220359 5.131155197 0.021760403 12.97112068 0.000227281 3.643437591 0.589291052 SHDS(ph)DDSDYAS(ph)SK ddPTM_HeLa_CUDC101_4h_R1 1 SHDSDDSDYASSK 13 0 Q9UKJ3;Q9UKJ3-2 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 2 0 S(0.018)HDS(0.98)DDS(0.022)DYAS(0.907)S(0.073)K 143.64 0.006033 7896800 4495.8 3362.7 4236.3 4410.3 4501.6 3161.8 3557.6 2061.4 4215.9 5161.5 TRUE FALSE FALSE 3968.809139 3466.300801 4465.327192 4590.171097 4169.525936 3101.493933 3694.817824 2296.061444 4042.118818 5130.799168 0.773526503 0.675586919 0.870298573 0.894630826 0.81264649 0.604485545 0.720125209 0.447505616 0.787814663 1 12.32496784 -3.642924065 0.093194425 1.186089037 2.02E-21 0.398528591 0.115593978 42.29969271 0.530936169 1.499848607 6.956691649 0.00022755 3.642924065 -1.186089037 QPTETPVAS(ph)QSSDKPSRDPETPR ddPTM_HeLa_CUDC101_4h_R1 1 QPTETPVASQSSDKPSRDPETPR 23 2 F5GX58;F8WDL1;Q99618;J3KMY0 F5GX58 CDCA3 Cell division cycle-associated protein 3 1 0 QPTET(0.003)PVAS(0.492)QS(0.167)S(0.167)DKPS(0.167)RDPET(0.003)PR 58.835 0.0048289 12416000 4729.1 3913.8 3788 3575.1 4440 3939.7 3314.3 2329.1 4036.4 4285.3 TRUE FALSE FALSE 4174.762067 4034.379539 3992.790738 3720.908031 4112.470046 3864.556786 3442.133661 2594.235329 3870.017884 4259.810845 0.980034612 0.947079503 0.93731644 0.873491375 0.965411422 0.907213237 0.808048476 0.609002471 0.908495242 1 12.05657365 -3.639360119 0.696748501 0.980309461 4.45E-30 0.854995213 0.041337975 1.310386076 0.242557635 0.006372458 1.240716591 0.000229425 3.639360119 -0.980309461 GELSPS(ph)FLNPPLPPSIDDR ddPTM_HeLa_CUDC101_4h_R1 1 GELSPSFLNPPLPPSIDDR 19 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 0 GELS(0.029)PS(0.971)FLNPPLPPSIDDR 111.65 0.0002675 8291800 1085.8 879.87 704.43 920.73 949.88 1134.5 826.85 483.58 958.97 1106.1 TRUE FALSE FALSE 958.52417 906.9777518 742.5136166 958.2813491 879.8092448 1112.861303 858.7418815 538.6287925 919.4408507 1099.520868 0.871765328 0.824884528 0.675306525 0.871544485 0.800175122 1.012132953 0.781014628 0.489875916 0.836219555 1 10.10265927 -3.63880519 0.053362384 1.417824963 6.24E-11 0.178878277 0.130257442 187.3831994 1.330455011 11.07801333 27.36095045 0.000229718 3.63880519 -1.417824963 TAVIPINGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 TAVIPINGSPR 11 0 A0A3B3IS71;P06400 A0A3B3IS71 RB1 Retinoblastoma-associated protein 1 0 TAVIPINGS(1)PR;TAVIPINGS(1)PR;TAVIPINGS(1)PR ;; 101.38 0.012477 111851000 12699.3 10424.5 9414.7 8996 10486.9 8808.8 8395.7 5649.3 9391.3 8887.1 TRUE FALSE FALSE 11210.7073 10745.66649 9923.68716 9362.895764 9713.30228 8640.786816 8719.524961 6292.393477 9004.186639 8834.239134 1.269006548 1.216365816 1.123321093 1.059841784 1.099506379 0.978101983 0.987014821 0.712273392 1.019237368 1 13.10889017 -3.638789321 0.731078394 1.133799109 2.42E-14 0.680291757 0.081954303 3.245973407 0.648468161 0.01776471 3.749246205 0.000229726 3.638789321 -1.133799109 EVMESAVGNSSGS(ph)GQNEESPR ddPTM_HeLa_CUDC101_4h_R1 1 EVMESAVGNSSGSGQNEESPR 21 0 Q9NVF7 Q9NVF7 FBXO28 F-box only protein 28 1 0 EVMESAVGNS(0.118)S(0.189)GS(0.505)GQNEES(0.189)PR 94.856 0.00058324 0 634.37 620.71 591.99 496.47 676.86 462.52 530.99 326.14 527.83 590.22 TRUE FALSE FALSE 560.0101102 639.8333394 623.9947701 516.7181925 626.9293863 453.6982016 551.4704622 363.2664593 506.072624 586.7093452 0.954493251 1.090545676 1.063550078 0.880705577 1.068551901 0.773292952 0.939938091 0.61915915 0.862561042 1 9.196502161 -3.638143654 0.812534764 0.990136622 1.13E-16 0.545425938 0.094472817 2.781638404 0.65561572 0.012469795 3.157129562 0.000230068 3.638143654 -0.990136622 DGFPS(ph)GTPALNAK ddPTM_HeLa_CUDC101_4h_R1 1 DGFPSGTPALNAK 13 0 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 DGFPS(0.945)GT(0.055)PALNAK 125.84 0.0016004 8345700 1838 1476.7 1785.5 1617.2 1611.7 1783.9 1372.8 1001.3 1324.2 1886.1 TRUE FALSE FALSE 1622.552426 1522.195377 1882.029531 1683.156406 1492.808102 1749.87508 1425.749356 1115.283945 1269.615916 1874.881393 0.865416038 0.811888892 1.003812581 0.897740205 0.796214687 0.933325748 0.76044776 0.594855733 0.677171324 1 10.87258362 -3.637744308 0.754041187 0.926770115 3.69E-27 0.327609599 0.103857818 2.845031169 0.596237568 0.012474392 2.780923074 0.00023028 3.637744308 -0.926770115 LDRPAGGPSAES(ph)PRPSSAYNGDLNGLLVPDPLCSGDSTSANK ddPTM_HeLa_CUDC101_4h_R1 2 LDRPAGGPSAESPRPSSAYNGDLNGLLVPDPLCSGDSTSANK 42 2 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 LDRPAGGPS(0.012)AES(0.253)PRPS(0.253)S(0.253)AY(0.23)NGDLNGLLVPDPLCSGDSTSANK;LDRPAGGPS(0.069)AES(0.237)PRPS(0.237)S(0.237)AY(0.221)NGDLNGLLVPDPLCS(0.001)GDSTSANK ; 72.491 5.21E-08 51977000 1888.89 1685.99 1284.78 1563.85 1523.81 1400.2 1365.36 1002.35 1607.16 1152.92 TRUE FALSE FALSE 1667.477178 1737.933354 1354.239093 1627.630563 1411.401572 1373.493518 1418.022393 1116.453472 1540.912185 1146.062381 1.454961969 1.516438706 1.181645184 1.420193691 1.231522469 1.198445688 1.237299484 0.974164663 1.344527323 1 10.16246986 -3.636394058 1.477650134 1.254649687 2.42E-06 0.264058552 0.147834708 9.909785424 5.195577815 0.028596069 28.87570624 0.000230997 3.636394058 -1.254647264 TAAAASEK(ac)NR ddPTM_HeLa_CUDC101_4h_R1 2 TAAAASEKNR 10 1 K7EN09;Q9UNZ5 K7EN09 C19orf53 Leydig cell tumor 10 kDa protein homolog 0 1 ; TAAAASEK(1)NR;TAAAASEK(1)NR 135.43 0.0013903 2097810 891.19 364.86 570.96 1193.59 579.89 647.11 915.53 467.82 235.02 271.03 FALSE TRUE FALSE 786.7260592 376.1009041 601.8278247 1242.269759 537.11267 634.7674549 950.8422988 521.0747378 225.3323761 269.4179015 2.920095713 1.395975925 2.233807855 4.610939928 1.993604237 2.356070073 3.529246919 1.93407615 0.836367498 1 8.073701904 -9.765702975 0.503751185 0.274823513 2.721805349 0.384763341 0.863419934 2.078594023 0.525648488 2.704531868 0.211541897 1.72E-10 9.765702975 2.446981835 TAS(ph)APNLAETEK ddPTM_HeLa_CUDC101_4h_R1 2 TASAPNLAETEK 12 0 Q86W92-4;Q86W92;Q86W92-3;F5GZP6 Q86W92-4 PPFIBP1 Liprin-beta-1 1 0 T(0.16)AS(0.84)APNLAET(0.001)EK;T(0.076)AS(0.924)APNLAETEK ; 121.42 0.00016785 0 5700 4251.1 4173 4676.6 4919.9 4617.2 3676.5 3682.7 4614.6 5643.2 TRUE FALSE FALSE 5031.854641 4382.071352 4398.605003 4867.331962 4556.968779 4529.134603 3818.303837 4101.923682 4424.384235 5609.633995 0.897002308 0.781168853 0.78411622 0.867673714 0.812346899 0.807385046 0.680668978 0.731228398 0.788711748 1 12.45369093 -3.635551213 0.058871698 1.398482893 2.61E-15 0.101167685 0.080245317 52.5667603 0.411843445 2.919758534 7.900033616 0.000231446 3.635551213 -1.398482893 RNEES(ph)DDDLDFDIDLEDTGGDHQMN ddPTM_HeLa_CUDC101_4h_R1 2 RNEESDDDLDFDIDLEDTGGDHQMN 25 1 Q96MD7-1 Q96MD7-1 1 0 RNEES(1)DDDLDFDIDLEDTGGDHQMN;RNEES(1)DDDLDFDIDLEDTGGDHQMN ; 110.1 1.12E-07 6655600 2987.14 3078.2 2603.47 2516.29 3069.8 2837.88 2612.47 2072.09 2873.95 3034.54 TRUE FALSE FALSE 2636.991977 3173.035693 2744.221463 2618.915183 2843.34697 2783.752167 2713.233843 2307.96835 2755.484565 3016.490421 0.874192061 1.051896492 0.909739823 0.868199403 0.942601027 0.92284469 0.899467084 0.765117082 0.913473666 1 11.55865529 -3.632833931 0.017161952 1.722433019 4.57E-08 0.226859762 0.064241991 2329.722048 5.28942043 228.67243 307.1297593 0.000232898 3.632833931 -1.722432973 ALSSGGSIT(ph)SPPLS(ph)PALPK ddPTM_HeLa_CUDC101_4h_R1 1 ALSSGGSITSPPLSPALPK 19 0 I1E4Y6;Q6Y7W6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;E7ESB6;C9JW88;F8WCD5;C9JPV7;C9JXQ0;C9J0V6;C9JHT0;C9JRZ2 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 2 0 ALSSGGS(0.016)IT(0.492)S(0.492)PPLS(0.999)PALPK 119.8 0.00021479 86626000 3923.6 3426.4 2774.4 3052 4034.5 3160.8 3149 2187.6 3113.6 3528.8 TRUE FALSE FALSE 3463.681556 3531.963323 2924.392456 3176.473752 3736.882973 3100.513006 3270.457985 2436.627541 2985.25609 3507.810541 0.987419792 1.006885429 0.833680275 0.905543134 1.065303536 0.883888389 0.932335982 0.694629175 0.851031165 1 11.77635511 -3.627982059 1.091073273 0.979304924 9.60E-18 0.431507864 0.076935334 2.904262911 1.03708979 0.009763309 4.596937909 0.000235515 3.627982059 -0.979304924 VPGGS(ph)PLGVSLVYSDKK ddPTM_HeLa_CUDC101_4h_R1 2 VPGGSPLGVSLVYSDKK 17 1 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 0 VPGGS(1)PLGVSLVYSDKK;VPGGS(1)PLGVSLVYSDKK ; 78.088 0.0080726 44422000 4629.3 4292.9 3945.6 4181.5 3585.9 3415.8 3010.7 2252.22 4378.1 4726.7 TRUE FALSE FALSE 4086.660472 4425.159161 4158.911071 4352.039644 3321.375301 3350.649306 3126.823708 2508.603621 4197.632865 4698.585378 0.869764012 0.941806694 0.885141109 0.926244666 0.706888358 0.713118745 0.665481939 0.533906148 0.893382269 1 12.19801075 -3.624629844 0.333142973 0.9645866 1.90E-12 0.868498596 0.0513043 2.484868069 0.141636372 0.018960432 1.050721898 0.00023734 3.624629844 -0.9645866 T(ph)SDVGGYYYEK ddPTM_HeLa_CUDC101_4h_R1 1 TSDVGGYYYEK 11 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.999)S(0.001)DVGGYYYEK 249.69 8.91E-55 90875000 4651.2 3096.9 2636.6 3016.4 3374.4 3323.2 2488.3 1754.6 3182.5 3444.7 TRUE FALSE FALSE 4105.993387 3192.311818 2779.142571 3139.42183 3125.477235 3259.815497 2584.274565 1954.336572 3051.316003 3424.210771 1.199106498 0.932276671 0.81161551 0.916830779 0.912758426 0.951990317 0.754706628 0.570740735 0.891100521 1 11.74155579 -3.621857677 0.375722032 1.083877654 9.21E-19 0.454563975 0.114585479 4.65961463 0.31736351 0.035596519 2.515580224 0.000238859 3.621857677 -1.083877654 LASDS(ph)DAESDSR ddPTM_HeLa_CUDC101_4h_R1 2 LASDSDAESDSR 12 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 LASDS(1)DAESDSR;LAS(0.001)DS(0.999)DAESDSR ; 269.14 3.39E-85 241280000 6279.8 5369.4 5157.6 5370.8 5628.4 4957.1 4588.6 3600.8 5431.1 5616.5 TRUE FALSE FALSE 5543.691364 5534.82485 5436.435457 5589.844439 5213.204145 4862.551577 4765.583839 4010.700517 5207.227759 5583.092808 0.992942721 0.99135462 0.97373188 1.001209299 0.93374843 0.870942279 0.853574175 0.718365368 0.932677987 1 12.44684882 -3.6217982 0.562448928 0.998560445 0.281759707 0.905686222 0.0263556 0.746938103 0.096263243 0.002864241 0.411351943 0.000238892 3.6217982 -0.716800738 TADGIVSHLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TADGIVSHLKK 11 1 P30101 P30101 PDIA3 Protein disulfide-isomerase A3 0 1 ; TADGIVSHLK(1)K;TADGIVSHLK(1)K 118.28 0.001899 7999400 9759 4327.9 3869.6 3609.9 11018.9 8417.4 9965.8 9112.6 8013.8 4465.6 FALSE TRUE FALSE 8615.064814 4461.237469 4078.802281 3757.127325 10206.0577 8256.852119 10350.18424 10149.94155 7683.467772 4439.038413 1.940750229 1.005000871 0.918848161 0.846383152 2.299159582 1.860054217 2.331627547 2.286518071 1.730885624 1 12.11603148 -5.745002593 24.98948091 1.336834357 2.180268808 0.618989177 0.36189614 173.406045 263634.3955 0.065756861 0.131210169 1.80E-06 5.745002593 0.84343445 (ac)MEVS(ph)PLQPVNENMQVNK ddPTM_HeLa_CUDC101_4h_R1 2 MEVSPLQPVNENMQVNK 17 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 MEVS(1)PLQPVNENMQVNK;MEVS(1)PLQPVNENMQVNK ; 101.39 9.26E-05 5354300 1076.3 848.42 772.68 659.45 808.12 733.73 709.64 395.32 810.2 817.55 TRUE FALSE FALSE 950.1377456 874.5588146 814.453418 686.3452214 748.5065976 719.7353227 737.0110525 440.3216309 776.8032131 812.6871762 1.169130969 1.07613217 1.002173335 0.844538023 0.921026712 0.885624068 0.906881607 0.541809498 0.955845294 1 9.666556319 -3.620424411 0.451120981 1.077201014 2.67E-11 0.659710148 0.092215183 3.445228492 0.311465225 0.022633213 2.247786987 0.000239649 3.620424411 -1.077201014 SWDS(ph)S(ph)SPVDRPEPEAASPTTR ddPTM_HeLa_CUDC101_4h_R1 1 SWDSSSPVDRPEPEAASPTTR 21 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 0 S(0.053)WDS(0.378)S(0.66)S(0.455)PVDRPEPEAAS(0.391)PT(0.052)T(0.011)R 67.644 0.0071101 48331000 3539.9 2850.7 2634.4 2863.2 2934.6 2366 2178.4 1587.2 3499.5 3469.5 TRUE FALSE FALSE 3124.958288 2938.526688 2776.823633 2979.973672 2718.120405 2320.872492 2262.421618 1767.880432 3355.249129 3448.86326 0.906083556 0.852027601 0.805141701 0.864045179 0.788120665 0.672938391 0.655990524 0.512598007 0.972856526 1 11.75190521 -3.620265491 0.258226009 0.997738848 3.73E-19 0.948321464 0.032746743 1.982130556 0.078973613 0.020481092 0.66518912 0.000239737 3.620265491 -0.997738848 TADK(ac)AVDLSK ddPTM_HeLa_CUDC101_4h_R1 1 TADKAVDLSK 10 1 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 0 1 TADK(1)AVDLSK 85.288 0.033973 836910 611.53 623.33 667.01 506.09 516.19 615.74 732.76 474.14 590.38 624.96 FALSE TRUE FALSE 539.8473804 642.5340585 703.0705782 526.7305377 478.1116921 603.9957854 761.0227987 528.1141811 566.0442865 621.2427101 0.868979823 1.03427219 1.131716424 0.847865945 0.769605316 0.972238025 1.225000771 0.850093164 0.911148376 1 9.279013207 -4.984183613 24.96002267 0.939772477 1.052815077 0.084923139 0.127819689 388.8013173 613563.6353 0.017548275 0.052622763 1.04E-05 4.984183613 0.1130426 YDS(ph)DGDKSDDLVVDVSNEDPAT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 YDSDGDKSDDLVVDVSNEDPATPR 24 1 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 2 0 Y(0.072)DS(0.908)DGDKS(0.022)DDLVVDVS(0.176)NEDPAT(0.822)PR 60.843 0.009222 8228900 1621.9 1313.5 1159.2 1665.6 1209.6 1374.3 1317 899.74 1654.6 1410.7 TRUE FALSE FALSE 1431.783341 1353.967378 1221.869858 1733.530367 1120.370218 1348.087517 1367.797131 1002.162765 1586.396688 1402.309094 1.021018367 0.965527061 0.871327059 1.236197052 0.798946697 0.961334076 0.97538919 0.714651833 1.13127462 1 10.45358866 -3.619875281 1.142016116 0.999684855 2.90E-31 0.345643231 0.115717434 4.606487044 1.721856245 0.014521838 7.892432648 0.000239952 3.619875281 -0.999684855 VVNGAAASQPPS(ph)KR ddPTM_HeLa_CUDC101_4h_R1 2 VVNGAAASQPPSKR 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 VVNGAAAS(0.032)QPPS(0.968)KR;VVNGAAAS(0.01)QPPS(0.99)KR ; 81.639 0.012546 80987000 6709 4267.3 4806.7 4848.3 4716.4 4726.9 4385.3 3228.7 4265.7 3581.8 TRUE FALSE FALSE 5922.58119 4398.770455 5066.564741 5046.03463 4368.480568 4636.742258 4554.44249 3596.242157 4089.86604 3560.495294 1.663414975 1.235437795 1.422994365 1.417228282 1.226930583 1.302274508 1.279159812 1.010039857 1.148678962 1 11.79786223 -3.619852306 1.32577098 1.324619661 7.33E-13 0.199791118 0.169545728 10.46017677 4.687728083 0.035389302 28.45073715 0.000239965 3.619852306 -1.324619661 SMQQLDPS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 SMQQLDPSPAR 11 0 Q9H410-4;Q9H410;Q5JW54;Q9H410-3;Q9H410-2 Q9H410-4 DSN1 Kinetochore-associated protein DSN1 homolog 1 0 SMQQLDPS(1)PAR;SMQQLDPS(1)PAR ; 120.6 0.0041117 22178000 6411.4 5768.2 5791.9 6422.6 6345.2 4956.5 5321.8 3621.2 6100.3 6174 TRUE FALSE FALSE 5659.865411 5945.911405 6105.027634 6684.541389 5877.127237 4861.963021 5527.063609 4033.422771 5848.843052 6137.276773 0.922211205 0.968819172 0.994745367 1.089170594 0.957611569 0.792202014 0.90057265 0.657200729 0.95300298 1 12.58338293 -3.618561181 0.798285794 0.972724953 0.070587017 0.700637451 0.062657605 2.707745284 0.606205709 0.010601257 2.76644113 0.000240679 3.618561181 -0.902137936 TAEK(ac)TSLSFK ddPTM_HeLa_CUDC101_4h_R1 2 TAEKTSLSFK 10 1 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 0 1 ; TAEK(1)TSLSFK;TAEK(1)TSLSFK 201.84 2.73E-08 55148000 9868.1 7009.9 5004.6 5506.4 5112.7 4574.9 5027 7774.9 6757.1 6057.1 FALSE TRUE FALSE 8711.376277 7225.86671 5275.163814 5730.974793 4735.546307 4487.641405 5220.893074 8659.963189 6478.569478 6021.0721 1.446814809 1.20009636 0.876117031 0.951819659 0.786495532 0.745322649 0.867103564 1.438275949 1.07598271 1 12.55580468 -6.770414881 21.85298585 1.21607406 0.924824753 0.223538731 0.21005504 42.87009101 104377.532 0.038488018 0.051099285 1.70E-07 6.770414881 -0.291249307 TAELLAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TAELLAKK 8 1 Q92541 Q92541 RTF1 RNA polymerase-associated protein RTF1 homolog 0 1 ; TAELLAK(1)K;TAELLAK(1)K 114.89 0.0030906 3863200 4089.1 3624.8 3000.3 5674.5 6791.5 6670 6109.2 6176.3 1555.54 1099.87 FALSE TRUE FALSE 3609.781897 3736.475792 3162.505293 5905.930637 6290.504576 6542.780863 6344.83389 6879.385027 1491.419983 1093.327924 3.301646118 3.417525253 2.89254964 5.401792551 5.753538747 5.984280395 5.803230439 6.29215158 1.364110391 1 10.09451046 -6.383953416 0.203738178 0.104862416 8.580061043 0.918211395 0.537607116 0.921740769 0.101022593 1.183033291 2.553004366 4.13E-07 6.383953416 8.475198627 GVEFPMADLDALS(ph)PIHTPQR ddPTM_HeLa_CUDC101_4h_R1 2 GVEFPMADLDALSPIHTPQR 20 0 Q6ZVM7-2;Q6ZVM7-5;Q6ZVM7 Q6ZVM7-2 TOM1L2 TOM1-like protein 2 1 0 GVEFPMADLDALS(1)PIHTPQR;GVEFPMADLDALS(0.998)PIHT(0.002)PQR ; 125.91 1.33E-05 10476800 3338.6 3595 3083.1 2826 3293.3 2948.3 2371.3 1840.03 4064.3 3490.6 TRUE FALSE FALSE 2947.254369 3705.757689 3249.781712 2941.256495 3050.35982 2892.06609 2462.761835 2049.491578 3896.767834 3469.837756 0.849392558 1.067991632 0.936580307 0.847663984 0.879107334 0.833487412 0.709762821 0.590659196 1.123040357 1 11.76065249 -3.617149711 0.570651737 0.94083705 3.13E-16 0.706305337 0.081958617 2.655124286 0.348896589 0.013142585 1.952198986 0.000241463 3.617149711 -0.94083705 TAENATSGETLEENEAGD ddPTM_HeLa_CUDC101_4h_R1 4 TAENATSGETLEENEAGD 18 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 0 ;;; ;;; 229.56 4.19E-33 577303000 19779.1 18530.3 16322.7 16613.3 19089.8 18070.3 17622.7 18598.8 18845.7 18982.1 FALSE FALSE TRUE 17460.62388 19101.19658 17205.15454 17290.86218 17681.58349 17725.63913 18302.41344 20716.01221 18068.87227 18869.19362 0.925350825 1.01229533 0.91181186 0.91635406 0.937060896 0.939395688 0.969962671 1.097874802 0.957585821 1 14.20374515 -4.265316211 4.186839075 0.956787903 1.108731547 0.649523815 0.032083187 0.12462696 4.874123188 0.005252609 0.056292778 5.43E-05 4.265316211 0.151943643 TAENFR ddPTM_HeLa_CUDC101_4h_R1 1 TAENFR 6 0 P49792;H0Y548;A6NM32;R4GN99;C9JQD4;P0DN37;P30405;O43447;P30405-2;P62937;F8WE65;C9J5S7;P0DN26;A0A0H2UH34;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284;Q08752 P49792;P62937;Q08752 RANBP2;PPIF;PPIH;PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D;PPID "E3 SUMO-protein ligase RanBP2;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase F, mitochondrial;Peptidyl-prolyl cis-trans isomerase H;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase D" 0 0 123.99 0.0003248 0 3854.6 1614.7 4838.3 4660.3 2215.3 2127.8 2651.9 1155.1 4097.7 4535.2 FALSE FALSE TRUE 3402.769631 1664.446993 5099.873133 4850.367178 2051.881732 2087.21576 2754.184671 1286.591915 3928.791072 4508.224429 0.754791534 0.369202337 1.131237633 1.075893016 0.455141878 0.46297956 0.610924481 0.285387725 0.871471936 1 12.13834362 -4.354740192 0.303324849 0.927316381 1.47E-44 0.353049015 0.23519493 6.549824224 0.460392809 0.112654088 2.231999977 4.42E-05 4.354740192 -0.927316381 QMPSESLDPAFS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 QMPSESLDPAFSPR 14 0 Q15018 Q15018 FAM175B BRISC complex subunit Abro1 1 0 QMPS(0.019)ES(0.017)LDPAFS(0.963)PR;QMPS(0.009)ES(0.002)LDPAFS(0.989)PR ; 133.9 0.00071443 35446000 3225.3 2725.5 2582.7 2735.7 2888 2949.1 2403.3 1792.71 2865.1 2988.3 TRUE FALSE FALSE 2847.235223 2809.469424 2722.328574 2847.273671 2674.957994 2892.850831 2495.996086 1996.78486 2746.999365 2970.525459 0.958495479 0.945781971 0.916446808 0.958508422 0.900499939 0.973851553 0.840254063 0.672199208 0.924752002 1 11.53650244 -3.613774601 0.907335908 0.969895411 1.07E-17 0.850530274 0.034561769 1.441647454 0.38841727 0.005434739 1.835818167 0.000243347 3.613774601 -0.969895411 YQEQGGEAS(ph)PQR ddPTM_HeLa_CUDC101_4h_R1 2 YQEQGGEASPQR 12 0 H0Y5J4;Q9UJU6-5;Q9UJU6 H0Y5J4 DBNL Drebrin-like protein 1 0 YQEQGGEAS(1)PQR;YQEQGGEAS(1)PQR ; 161.49 0.00010402 170291000 5297.2 4227.6 4668.8 4078.1 4320.3 3830.8 3331.2 2433.54 4674 5052 TRUE FALSE FALSE 4676.270246 4357.847345 4921.20945 4244.422545 4001.600076 3757.733873 3459.6855 2710.564357 4481.335742 5021.950479 0.931166141 0.86775992 0.97993986 0.845174114 0.796821891 0.748261833 0.688912707 0.539743346 0.892349648 1 12.29403209 -3.61328396 0.349866477 0.983386828 2.85E-13 0.889248483 0.044535532 1.539183319 0.093746322 0.011267611 0.699934699 0.000243622 3.61328396 -0.983386828 TAFEEVEEDLR ddPTM_HeLa_CUDC101_4h_R1 1 TAFEEVEEDLR 11 0 Q6P158;H7C109 Q6P158 DHX57 Putative ATP-dependent RNA helicase DHX57 0 0 146.11 0.0055467 2015700 904.06 1079.5 708.04 967.32 941.36 1064.5 1113.2 646.29 948.59 1102.3 FALSE FALSE TRUE 798.0874573 1112.758115 746.3187841 1006.771491 871.9177483 1044.196436 1156.136497 719.8610412 909.4887187 1095.743471 0.728352465 1.015527946 0.681107215 0.918802181 0.795731639 0.952957023 1.055116027 0.656961288 0.830019747 1 10.09769437 -9.653131952 1.499477724 0.999798389 0.84066461 0 0.139829809 0.566699013 2.29620875 0.088876805 0.020153607 2.22E-10 9.653131952 -0.159133779 TAFQEALDAAGDK ddPTM_HeLa_CUDC101_4h_R1 2 TAFQEALDAAGDK 13 0 P10599-2;P10599 P10599-2 TXN Thioredoxin 0 0 ; ; 198.14 8.71E-16 55789000 4850.8 3724.1 3344.7 3881.7 2892.2 3305.7 3054.1 2751.4 3718 4416.7 FALSE FALSE TRUE 4282.196577 3838.835107 3525.524599 4040.012504 2678.848168 3242.64928 3171.89766 3064.608254 3564.742466 4390.429272 0.975348038 0.874364412 0.803002253 0.920186217 0.61015632 0.738572262 0.722457296 0.698020185 0.811934835 1 12.10014629 -6.511308786 0.725212583 0.996721722 0.693324889 0.486599752 0.086199128 0.199566824 0.210148428 0.012972424 0.02624044 3.08E-07 6.511308786 -0.303396833 S(ph)GGNEVSIEER ddPTM_HeLa_CUDC101_4h_R1 2 SGGNEVSIEER 11 0 Q15061 Q15061 WDR43 WD repeat-containing protein 43 1 0 S(1)GGNEVSIEER;S(1)GGNEVSIEER ; 191.01 2.83E-11 55905000 2843 2183.55 1853.63 1725.83 2100.05 2091.49 1694.64 1054.05 2308.45 2353.9 TRUE FALSE FALSE 2509.74785 2250.822587 1953.842845 1796.216807 1945.133495 2051.598313 1760.002832 1174.038791 2213.294714 2339.898898 1.072588158 0.961931556 0.835011652 0.767647187 0.831289547 0.876789298 0.752170461 0.501747658 0.94589331 1 11.19223048 -3.612608231 0.315975363 1.045715527 1.39E-13 0.713056101 0.081677384 3.995739168 0.209678832 0.034408553 1.735275284 0.000244001 3.612608231 -1.045715527 DVSS(ph)PDENNGQSK ddPTM_HeLa_CUDC101_4h_R1 2 DVSSPDENNGQSK 13 0 J3QL74;J3QLI2;O43829 J3QL74 ZBTB14 Zinc finger and BTB domain-containing protein 14 1 0 DVS(0.003)S(0.997)PDENNGQSK;DVS(0.01)S(0.99)PDENNGQSK ; 161.87 4.77E-05 19653500 11242.6 7142.1 9127.9 10518.2 9681.9 8089.9 8032.8 5127.1 10371.4 10299.6 TRUE FALSE FALSE 9924.759471 7362.139636 9621.381884 10947.17766 8967.685526 7935.598636 8342.627787 5710.74834 9943.886502 10238.33752 0.969372171 0.719075692 0.939740643 1.06923391 0.875892742 0.775086641 0.814842036 0.557780824 0.971240349 1 13.32169385 -3.610550523 0.550235647 0.971653045 1.93E-20 0.581291538 0.094641709 3.560239338 0.438805216 0.018348998 2.60287507 0.00024516 3.610550523 -0.971653045 IKDNGDLVLS(ph)SPSNVTLPQVK ddPTM_HeLa_CUDC101_4h_R1 1 IKDNGDLVLSSPSNVTLPQVK 21 1 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;P04150-9;P04150-8;P04150-13;P04150-12;P04150-11 A0A494C0P1 NR3C1 Glucocorticoid receptor 1 0 IKDNGDLVLS(0.497)S(0.359)PS(0.126)NVT(0.018)LPQVK 70.501 0.0026171 49639000 4780.3 4036.9 3653.8 3985.9 4362.2 3709.3 3489.1 2485.2 4052.8 3851.2 TRUE FALSE FALSE 4219.96048 4161.272104 3851.33548 4148.462231 4040.409197 3638.551283 3623.675756 2768.105122 3885.741869 3828.292891 1.102308679 1.08697851 1.006019025 1.083632404 1.055407544 0.950437019 0.946551337 0.723065137 1.015006422 1 11.90248549 -3.609680313 0.895790895 1.052371389 7.67E-11 0.863527701 0.038792905 1.75844632 0.462336339 0.007176756 2.398485272 0.000245652 3.609680313 -1.052371389 VEVS(ph)EDEPASK ddPTM_HeLa_CUDC101_4h_R1 1 VEVSEDEPASK 11 0 O75683 O75683 SURF6 Surfeit locus protein 6 1 0 VEVS(1)EDEPASK 137.95 0.0015235 18514000 3183.9 2775 2929.3 2719.3 2978.8 2504.6 2200 1583.1 3059.9 3239.8 TRUE FALSE FALSE 2810.688068 2860.494461 3087.666819 2830.204808 2759.059859 2456.828928 2284.854737 1763.313705 2933.769627 3220.529526 0.872740972 0.888206252 0.958745074 0.878801075 0.856710003 0.762864898 0.709465546 0.547522912 0.910958774 1 11.6530822 -3.609308307 0.464324552 0.945899916 5.78E-20 0.917844837 0.0360773 1.900917197 0.178522903 0.010571159 1.126040005 0.000245862 3.609308307 -0.945899916 IESDVQEPT(ph)EPEDDLDIMLGNKK ddPTM_HeLa_CUDC101_4h_R1 3 IESDVQEPTEPEDDLDIMLGNKK 23 1 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 IESDVQEPT(1)EPEDDLDIMLGNKK;IESDVQEPT(1)EPEDDLDIMLGNKK;IES(0.001)DVQEPT(0.999)EPEDDLDIMLGNKK ;; 100.93 0.00069626 25629500 4847.76 4083.37 4028.75 4545.91 6155.1 7213.6 7479.1 9817 4954.84 4173.85 TRUE FALSE FALSE 4279.512922 4209.17379 4246.556411 4731.311859 5701.050536 7076.012599 7767.571392 10934.5276 4750.599398 4149.023755 1.031450571 1.014497395 1.023507375 1.140343401 1.374070353 1.70546447 1.872144353 2.635445889 1.144992094 1 12.0185562 -3.608591447 0.557172314 0.999306374 5.228631982 0.976824945 0.077047755 0.521748037 0.065505194 0.011578946 1.684027353 0.000246268 3.608591447 4.229325609 up T(ph)FSLTEVR ddPTM_HeLa_CUDC101_4h_R1 3 TFSLTEVR 8 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 0 T(0.974)FS(0.023)LT(0.003)EVR;T(1)FSLTEVR;T(0.938)FS(0.022)LT(0.04)EVR ;; 133.99 0.024724 244422000 9849.7 8559.3 8735.9 8388.8 11064.1 10912.9 12059.6 12638.3 8099 8281.2 TRUE FALSE FALSE 8695.133097 8823.001888 9208.189179 8730.931523 10247.92339 10704.75461 12524.74281 14076.99299 7765.155792 8231.943054 1.056267401 1.071800647 1.118592429 1.060616123 1.244897264 1.300392209 1.52148074 1.710044991 0.943295616 1 13.00701729 -3.606725706 0.484570076 1.020255225 2.817013977 0.969155537 0.040983784 0.655802097 0.065780643 0.00670666 0.773149601 0.000247329 3.606725706 1.796758752 KLDDQSEDEALELEGPLITPGS(ph)GSIYSSPGLYSK ddPTM_HeLa_CUDC101_4h_R1 1 KLDDQSEDEALELEGPLITPGSGSIYSSPGLYSK 34 1 Q96AC1;Q96AC1-3;G3V3J0;Q96AC1-2 Q96AC1 FERMT2 Fermitin family homolog 2 1 0 KLDDQSEDEALELEGPLIT(0.014)PGS(0.221)GS(0.221)IY(0.164)S(0.181)S(0.181)PGLY(0.015)S(0.005)K 62.833 0.00067685 8902200 4096.1 3230.9 3052.4 2916.5 3521.3 3038 2497.4 1903.2 4002.9 3282.2 TRUE FALSE FALSE 3615.961367 3330.440199 3217.421977 3035.447476 3261.540714 2980.055212 2593.725555 2119.852595 3837.898768 3262.677328 1.10828041 1.0207691 0.986129382 0.930354789 0.999651631 0.91337724 0.794968455 0.649727932 1.176303502 1 11.6718406 -3.601504025 0.548136798 1.046944686 4.90E-16 0.844476676 0.056165734 1.782789683 0.2167818 0.009759489 1.401886639 0.00025032 3.601504025 -1.046944686 TAK(ac)LQDFK ddPTM_HeLa_CUDC101_4h_R1 2 TAKLQDFK 8 1 P34897-3;P34897-2;P34897 P34897-3 SHMT2 "Serine hydroxymethyltransferase, mitochondrial" 0 1 ; TAK(1)LQDFK;TAK(1)LQDFK 96.89 0.024157 1566200 5645.4 3170.3 1809.31 3441.5 3483.5 3495.9 2947.9 2457.06 1570.54 1332.47 FALSE TRUE FALSE 4983.65477 3267.973185 1907.126771 3581.859245 3226.529145 3429.221532 3061.60149 2736.761779 1505.801676 1324.544409 3.762542604 2.467243199 1.439836036 2.704219821 2.43595392 2.588981923 2.311437404 2.066191031 1.136844991 1 10.3712805 LAS(ph)TSDIEEKENR ddPTM_HeLa_CUDC101_4h_R1 1 LASTSDIEEKENR 13 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIS4;H0YHI8;A0A3B3ISH4;F8VZN8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 LAS(0.77)T(0.228)S(0.002)DIEEKENR 140.33 0.0037185 15684000 2783 2581.9 2839.6 3170 4105.1 4165.7 5261.6 6221.4 2389.9 2769.1 TRUE FALSE FALSE 2456.780959 2661.445279 2993.117365 3299.286302 3802.274952 4086.246213 5464.541675 6929.619028 2291.38731 2752.62927 0.892521556 0.966873857 1.087366685 1.198594499 1.381324755 1.484488397 1.98520801 2.517454531 0.832435859 1 11.4265946 -3.599404605 0.52425736 0.941762588 5.089160549 0.983736428 0.06529531 0.5986343 0.067687284 0.01328454 1.777378517 0.000251533 3.599404605 4.147397962 up TALIHDGLAR ddPTM_HeLa_CUDC101_4h_R1 2 TALIHDGLAR 10 0 P25398 P25398 RPS12 40S ribosomal protein S12 0 0 ; ; 125.68 0.0031873 78760000 12001.4 10597.7 10008 10086.6 11165.4 9793.4 9015.3 9702.6 9854.8 8791.6 FALSE FALSE TRUE 10594.61408 10924.20258 10549.06275 10497.97515 10341.75069 9606.607212 9363.023141 10807.10476 9448.580973 8739.307172 1.212294508 1.250007851 1.207082271 1.201236544 1.183360475 1.099241281 1.071369041 1.23660887 1.081159042 1 13.0933032 -9.261650043 0.987979717 0.999838122 1.180812978 0.466517283 0.058522548 0.313316952 0.547777716 0.039720296 0.010801858 5.47E-10 9.261650043 0.180974856 SERPPTILMTEEPS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 2 SERPPTILMTEEPSSPK 17 1 Q5VZK9;Q5VZK9-2;A0A0U1RQQ1 Q5VZK9 LRRC16A Leucine-rich repeat-containing protein 16A 1 0 SERPPTILMTEEPS(0.5)S(0.5)PK;SERPPTILMTEEPS(0.5)S(0.5)PK ; 83.37 0.0058213 62626000 4425.7 3296.8 3379.9 3939.8 3391.7 3745.8 2799.6 2642.5 3527.2 3828.9 TRUE FALSE FALSE 3906.926155 3398.3705 3562.627618 4100.482073 3141.501048 3674.355106 2907.58151 2943.311519 3381.807323 3806.125533 1.026483788 0.892868738 0.936024728 1.077337581 0.825380304 0.96537938 0.763921601 0.773309102 0.888517022 1 11.89410743 -3.599393835 0.42240672 1.010415093 0.363617002 0.377894466 0.079310604 3.916629099 0.315081136 0.015725728 1.435800577 0.000251539 3.599393835 -0.64679809 TALLDAAGVASLLTTAEVVVTEIPKEEK ddPTM_HeLa_CUDC101_4h_R1 2 TALLDAAGVASLLTTAEVVVTEIPKEEK 28 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 223.91 5.55E-44 29023000 6213.7 4759.6 4503.9 4796.9 5013.2 5182.5 3989.6 3621 4877.5 7827.7 FALSE FALSE TRUE 5485.339505 4906.237634 4747.394458 4992.538316 4643.386224 5083.652447 4143.480208 4033.200003 4676.447386 7781.140492 0.704953151 0.630529373 0.610115505 0.64162038 0.596748796 0.653329991 0.532502943 0.518330187 0.60099768 1 12.92576591 -9.23178689 0.2716055 1.209145442 0.532711213 0 0.130780565 0.664502702 0.069063805 0.149349775 0.027589247 5.86E-10 9.23178689 -0.676434229 ESGVAGDPWKEETDT(ph)DLEVVLEK ddPTM_HeLa_CUDC101_4h_R1 1 ESGVAGDPWKEETDTDLEVVLEK 23 1 Q1ED39 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 0 ESGVAGDPWKEET(0.042)DT(0.958)DLEVVLEK 82.8 0.00052627 25978000 2599.7 1768.5 2221.3 2139.9 2454.9 3187.5 2518.8 3275 1946.7 2398.2 TRUE FALSE FALSE 2294.967107 1822.985389 2341.390197 2227.174371 2273.806918 3126.703748 2615.95096 3647.812762 1866.456202 2383.9354 0.962680074 0.7646958 0.982153374 0.934242753 0.953803915 1.311572347 1.0973246 1.530164266 0.782930696 1 11.21912943 -3.598831407 0.711341234 0.959465001 2.516589062 0.698857206 0.121234515 2.510835933 0.459944745 0.017400687 3.91850112 0.000251865 3.598831407 1.557124062 EVS(ph)SRPSTPGLS(ph)VVSGISATSEDIPNKIEDLR ddPTM_HeLa_CUDC101_4h_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 0 EVS(0.291)S(0.291)RPS(0.291)T(0.303)PGLS(0.701)VVS(0.116)GIS(0.005)ATSEDIPNKIEDLR 75.275 3.43E-06 261470000 1455.8 1141.7 1144.1 1056 1149.9 1002.1 978.95 684.88 1258.9 881.7 TRUE FALSE FALSE 1285.153331 1176.874424 1205.953507 1099.068244 1065.074168 982.9866121 1016.708429 762.8439708 1207.007609 876.4556092 1.466307383 1.342765579 1.375943623 1.253991911 1.21520606 1.121547517 1.160022731 0.870373768 1.377146311 1 9.775537213 -3.596185404 0.945668243 1.247377246 2.89E-10 0.479608053 0.126977841 6.385148134 1.778777015 0.028171367 11.05928085 0.000253405 3.596185404 -1.247377245 GLVSDGTS(ph)PGER ddPTM_HeLa_CUDC101_4h_R1 1 GLVSDGTSPGER 12 0 Q9NRF2-2;Q9NRF2-3;Q9NRF2 Q9NRF2-2 SH2B1 SH2B adapter protein 1 1 0 GLVSDGT(0.108)S(0.892)PGER 129.76 0.0017148 12387000 4555.1 4335.5 3771.1 4133.5 4496.4 3812.5 3762.1 2567.9 4347 4375.7 TRUE FALSE FALSE 4021.158083 4469.071616 3974.977073 4302.081997 4164.70953 3739.782915 3907.205457 2860.219356 4167.81482 4349.673142 0.924473622 1.027449988 0.9138565 0.989058685 0.957476434 0.859784814 0.898275647 0.657571101 0.958190348 1 12.08669128 -3.59452816 0.897706199 0.966032324 2.10E-14 0.829569488 0.040989668 1.830437119 0.472566304 0.006527179 2.312947706 0.000254373 3.59452816 -0.966032324 S(ph)SPVPVSDTQK ddPTM_HeLa_CUDC101_4h_R1 1 SSPVPVSDTQK 11 0 Q76FK4-2;Q76FK4-4;Q76FK4;F8WE42;F5H101;F5GWN9 Q76FK4-2 NOL8 Nucleolar protein 8 1 0 S(0.5)S(0.5)PVPVSDTQK 182.41 1.35E-10 13585000 3086.6 2455 1797.4 2560.1 2030.3 2272.2 1936.1 1244.7 2327 2898.1 TRUE FALSE FALSE 2724.793427 2530.63564 1894.572881 2664.511944 1880.528814 2228.861571 2010.776026 1386.391617 2231.080075 2880.861972 0.945825747 0.87843002 0.657640977 0.924900939 0.652766024 0.773678709 0.697977218 0.481241944 0.774448792 1 11.49228482 -3.593503879 0.213824834 1.038242709 1.24E-15 0.433229454 0.1151087 6.335186147 0.196217729 0.082931502 1.83148363 0.000254974 3.593503879 -1.038242709 TAMSTPHVAEPAENEQDEQDENGAEASADLR ddPTM_HeLa_CUDC101_4h_R1 1 TAMSTPHVAEPAENEQDEQDENGAEASADLR 31 0 P26038 P26038 MSN Moesin 0 0 120.4 6.02E-14 40942000 1692.4 1824.1 1853.4 1843.1 2061.4 1752.1 1625.6 2399.4 1614.3 2241.6 FALSE FALSE TRUE 1494.019438 1880.298359 1953.60041 1918.269585 1909.334629 1718.681612 1688.299937 2672.537997 1547.757871 2228.266864 0.670484968 0.843838945 0.876735387 0.860879644 0.856869821 0.771308697 0.757674031 1.19937968 0.694601664 1 11.12170631 -4.25362136 24.46071408 0.836338024 1.199379921 0.595745909 0.093547091 515.4956654 1612810.246 0.016721631 0.238437131 5.58E-05 4.25362136 0.363041896 TANDMIHAENMR ddPTM_HeLa_CUDC101_4h_R1 1 TANDMIHAENMR 12 0 P26038 P26038 MSN Moesin 0 0 98.337 0.00054757 0 4893.5 5236.6 3824.9 4555 4055.6 5190.9 4207.6 4472.9 3912.6 4019.5 FALSE FALSE TRUE 4319.891348 5397.933439 4031.685664 4740.772588 3756.426468 5091.892231 4369.888541 4982.076856 3751.320972 3995.591835 1.081164325 1.350972187 1.009033412 1.18650072 0.940142693 1.274377474 1.093677413 1.246893342 0.938864911 1 11.9641935 -7.784608864 2.291335113 1.027408055 1.148580009 0.241482331 0.120416418 0.322929736 3.519229489 0.021668819 0.0211938 1.64E-08 7.784608864 0.121171954 TANQASDTFSGIGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TANQASDTFSGIGKK 15 1 Q15847 Q15847 ADIRF Adipogenesis regulatory factor 0 1 ; TANQASDTFSGIGK(1)K;TANQASDTFSGIGK(1)K 298.91 6.75E-103 4923500 1892.93 2401.9 2899.2 2895.7 3225.7 2795.1 3166.9 3539.4 1671.77 1851.79 FALSE TRUE FALSE 1671.043615 2475.899692 3055.939522 3013.799162 2987.746538 2741.788124 3289.048394 3942.310989 1602.858933 1840.775471 0.907793287 1.345030794 1.660137029 1.637244308 1.623091238 1.4894745 1.786773263 2.141657715 0.870752006 1 10.84609795 -6.979594877 2.2884277 0.955009443 1.714047504 0.82531491 0.164305875 0.088786591 0.932525344 0.028664446 0.037670853 1.05E-07 6.979594877 0.75903806 KEGSYSSLSPPTLT(ph)PVMPVNAGGK ddPTM_HeLa_CUDC101_4h_R1 1 KEGSYSSLSPPTLTPVMPVNAGGK 24 1 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 KEGSYS(0.001)S(0.01)LS(0.046)PPT(0.038)LT(0.904)PVMPVNAGGK 112.56 5.41E-06 26051000 3682 3783.1 3040.7 3340 3718.6 3039.3 3341.3 2308.8 3301.1 3541.4 TRUE FALSE FALSE 3250.401542 3899.652827 3205.08944 3476.219637 3444.286286 2981.330416 3470.17506 2571.62446 3165.027261 3520.335595 0.9233215 1.107750304 0.910449971 0.987468252 0.978397142 0.846888126 0.985751206 0.730505484 0.899069755 1 11.78149725 -3.593282649 1.282851442 0.968690952 3.92E-34 0.477958375 0.069622626 4.03697304 1.645141645 0.009262177 7.839763393 0.000255104 3.593282649 -0.968690952 GQSQLS(ph)NPTDDSWK ddPTM_HeLa_CUDC101_4h_R1 3 GQSQLSNPTDDSWK 14 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 GQSQLS(0.724)NPT(0.276)DDSWK;GQSQLS(0.551)NPT(0.413)DDS(0.036)WK;GQSQLS(0.989)NPT(0.01)DDS(0.001)WK ;; 163.9 2.66E-05 68467000 12228.8 9262.4 9384.5 9084.4 10421.2 10032.6 9354.5 6697.6 11301.2 9954.7 TRUE FALSE FALSE 10795.3586 9547.763565 9891.854457 9454.901098 9652.448838 9841.24487 9715.306199 7460.027711 10835.35975 9895.489002 1.090937355 0.964860207 0.999632707 0.955475884 0.975439297 0.994518297 0.98179142 0.753881664 1.094979718 1 13.27255529 -3.590784867 1.133052375 1.024631138 9.56E-33 0.717906564 0.047056134 2.721286788 0.954078276 0.007872065 4.81083408 0.000256575 3.590784867 -1.024631138 SKS(ph)DGEAKPEPSPSPR ddPTM_HeLa_CUDC101_4h_R1 1 SKSDGEAKPEPSPSPR 16 2 P26358;K7ERQ1;K7ENQ6;K7EJL0 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 1 0 S(0.254)KS(0.746)DGEAKPEPSPSPR 75.998 0.018866 21466000 2433.3 2923.8 2686.7 2723 3348.1 3346.1 3590 5313.5 3431.7 3655.1 TRUE FALSE FALSE 2148.072263 3013.878812 2831.951129 2834.05571 3101.117333 3282.278717 3728.467503 5918.367362 3290.243873 3633.359303 0.591208324 0.829502001 0.77943052 0.780009758 0.853512432 0.903373007 1.026176382 1.628896806 0.905565236 1 11.82708833 -3.590739305 1.093623654 0.801845668 3.969279718 0.852446068 0.100154229 2.369861722 0.794742801 0.02218545 12.41126972 0.000256602 3.590739305 3.16743405 LSSS(ph)KENLDASK ddPTM_HeLa_CUDC101_4h_R1 3 LSSSKENLDASK 12 1 K7EQL6;Q8NFA0;K7EN13 K7EQL6 USP32 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 32 1 0 LS(0.001)S(0.261)S(0.737)KENLDASK;LS(0.003)S(0.313)S(0.684)KENLDASK;LS(0.006)S(0.172)S(0.81)KENLDAS(0.013)K ;; 143.05 0.0057619 54098400 10294.8 7487.8 7518.5 7494.9 6822.5 7536.7 6314.7 4145.63 7915 9193.9 TRUE FALSE FALSE 9088.05915 7718.490243 7924.972852 7800.574418 6319.217767 7392.950004 6558.260094 4617.551762 7588.74035 9139.214274 0.994402678 0.84454637 0.867139408 0.853527906 0.69143994 0.808926214 0.717595616 0.505246034 0.830349319 1 13.15785442 -3.588283236 0.268301608 1.027612464 1.96E-23 0.649354843 0.082120608 3.295885679 0.13631794 0.032571202 1.188730029 0.000258058 3.588283236 -1.027612464 TAPGMGDQSGCYR ddPTM_HeLa_CUDC101_4h_R1 1 TAPGMGDQSGCYR 13 0 E9PB51;Q9BWF3;Q96PK6-5;Q9BQ04 E9PB51;Q9BQ04 RBM4;RBM14;RBM4B RNA-binding protein 4;RNA-binding protein 14;RNA-binding protein 4B 0 0 157.97 0.00037151 8025000 1031.7 840.86 1024.4 631.07 1214.3 825.59 723.23 758.95 1007.9 593.18 FALSE FALSE TRUE 910.76569 866.7658999 1079.782163 656.8077623 1124.723508 809.8432463 751.1252234 845.3458002 966.3539354 589.651739 1.544582386 1.469962425 1.831220178 1.113890995 1.907436939 1.373426368 1.273845515 1.433635728 1.638855398 1 9.203719309 -9.206313431 0.853483771 0.986784754 1.495719384 0 0.297077417 0.485038063 0.610821607 0.160317741 0.040707782 6.22E-10 9.206313431 0.50893463 SQS(ph)LQDQPTR ddPTM_HeLa_CUDC101_4h_R1 2 SQSLQDQPTR 10 0 Q8N4C8;Q8N4C8-2;Q8N4C8-3 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 SQS(1)LQDQPTR;S(0.031)QS(0.965)LQDQPT(0.003)R ; 169.09 3.88E-07 25154000 3819.7 3228.6 3344.4 3393.5 3618.6 3967.3 4183.4 5557.2 2828.6 3417.6 TRUE FALSE FALSE 3371.960556 3328.069339 3525.20838 3531.901598 3351.663087 3891.630362 4344.755139 6189.809185 2712.003911 3397.271963 0.992549491 0.979629943 1.037658574 1.039628748 0.986574853 1.145516286 1.278895298 1.821994015 0.798288727 1 11.730161 -3.585732768 0.965509485 0.998180089 3.906586361 0.932478152 0.068855721 0.405100828 0.114307173 0.003939854 1.68447662 0.000259578 3.585732768 2.908406272 VEPEVLSTDTQTS(ph)PEPGTR ddPTM_HeLa_CUDC101_4h_R1 1 VEPEVLSTDTQTSPEPGTR 19 0 P29375;P29375-2 P29375 KDM5A Lysine-specific demethylase 5A 1 0 VEPEVLSTDTQT(0.233)S(0.767)PEPGTR 164.82 7.42E-06 6302800 2812.2 2319 2430.9 2321.3 2407.2 2109.6 2045.1 1436 2107.4 2145.9 TRUE FALSE FALSE 2482.558179 2390.445641 2562.321807 2415.972648 2229.625652 2069.362895 2123.980192 1599.468435 2020.53208 2133.136091 1.163806749 1.120625004 1.201199407 1.132591895 1.045233664 0.97010355 0.995707775 0.749820155 0.947211989 1 11.0587603 -3.584477062 0.85689941 1.093804653 2.68E-12 0.633855045 0.075850692 3.067246749 0.730451085 0.012507419 4.176838892 0.000260329 3.584477062 -1.093804653 TGSPGS(ph)PGAGGVQSTAK ddPTM_HeLa_CUDC101_4h_R1 3 TGSPGSPGAGGVQSTAK 17 0 O43237;O43237-2;J3KRZ2;J3KRI4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 T(0.001)GSPGS(0.999)PGAGGVQSTAK;TGS(0.008)PGS(0.992)PGAGGVQSTAK;T(0.05)GS(0.164)PGS(0.786)PGAGGVQSTAK ;; 225.17 6.75E-56 52040000 10820.1 8800.8 8670 8781.6 8946.6 7924.1 7084.1 5037.66 9626.7 9599.6 TRUE FALSE FALSE 9551.78428 9071.942216 9138.726425 9139.751605 8286.627142 7772.960995 7357.33611 5611.126851 9229.883351 9542.501152 1.000972819 0.950688092 0.957686699 0.957794132 0.868391526 0.814562228 0.771007097 0.58801427 0.967239427 1 13.22015174 -3.583828456 0.465171382 1.002609084 1.40E-22 0.966285737 0.022837536 0.736736586 0.06817545 0.004169255 0.466074843 0.000260718 3.583828456 -1.002609084 GPAFNMAS(ph)PESDFGINLK ddPTM_HeLa_CUDC101_4h_R1 2 GPAFNMASPESDFGINLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GPAFNMAS(0.695)PES(0.305)DFGINLK;GPAFNMAS(0.987)PES(0.013)DFGINLK ; 227.09 2.25E-33 192283000 4827.2 4291.5 3139.5 3434.8 4333.6 3800 3511.1 1690.63 4582.1 4460.2 TRUE FALSE FALSE 4261.362934 4423.716028 3309.230866 3574.88599 4013.918962 3727.521331 3646.524303 1883.084485 4393.223899 4433.670532 0.96113658 0.997754794 0.746386283 0.806303934 0.905326396 0.840730339 0.822461723 0.424723595 0.990877393 1 12.11428585 -3.583781313 0.410905458 0.980662274 9.18E-34 0.665328718 0.095749224 3.948571305 0.30146709 0.024047391 2.136847839 0.000260747 3.583781313 -0.980662274 IISVT(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 IISVTPVK 8 0 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 0 IIS(0.001)VT(0.999)PVK;IIS(0.015)VT(0.985)PVK ; 142 0.021114 289960000 25648 18427.4 17840.4 18627.1 18544 17825.3 16125 10027 18064 20860.7 TRUE FALSE FALSE 22641.58032 18995.12635 18804.90599 19386.79365 17176.04606 17485.3121 16746.94665 11168.43315 17319.39427 20736.61963 1.091864572 0.916018459 0.906845297 0.934906171 0.828295372 0.843209376 0.807602538 0.538585042 0.835208177 1 14.33989311 -3.582725653 0.378633065 1.042866401 8.61E-18 0.597897051 0.087684294 2.7692992 0.18662501 0.019231356 1.459954543 0.000261381 3.582725653 -1.042866401 T(ph)ASPSTSSIDSATDTR ddPTM_HeLa_CUDC101_4h_R1 1 TASPSTSSIDSATDTR 16 0 Q96P50-4;Q96P50-1;Q96P50 Q96P50-4 ACAP3 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3" 1 0 T(0.993)AS(0.007)PSTSSIDSATDTR 249.58 3.63E-55 7836700 1225.9 1120.9 984.39 1093.1 1231.5 840.14 829.91 596.31 1216.7 1283.3 TRUE FALSE FALSE 1082.20186 1155.4336 1037.609101 1137.681343 1140.654698 824.1157293 861.9199067 664.19152 1166.547111 1275.666875 0.848342057 0.90574869 0.813385627 0.891832629 0.894163454 0.64602738 0.675662216 0.520662199 0.914460612 1 10.31703592 -3.581925397 0.355598657 0.946190359 1.88E-19 0.83056814 0.058223777 3.129377106 0.191978748 0.020896769 1.399838905 0.000261863 3.581925397 -0.946190359 VEENPDADS(ph)DFDAK ddPTM_HeLa_CUDC101_4h_R1 2 VEENPDADSDFDAK 14 0 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 0 VEENPDADS(1)DFDAK;VEENPDADS(1)DFDAK ; 147.49 0.00030708 99080000 14938 12734.3 12170.6 11695.5 11549.9 10427.4 9477.7 7770.3 16339.4 15673.6 TRUE FALSE FALSE 13186.99028 13126.62869 12828.57945 12172.49304 10697.88689 10228.51472 9843.258064 8654.839543 15665.88302 15580.37273 0.846384776 0.842510569 0.82338078 0.781270978 0.686625864 0.656500001 0.631772951 0.555496309 1.005488334 1 13.92744213 -3.581582571 0.160283899 1.059188532 8.89E-14 0.979839992 0.020363998 2.971406928 0.065387969 0.054770377 0.666089442 0.00026207 3.581582571 -1.059188532 HGGS(ph)PQPLATT(ph)PLSQEPVNPPS(ph)EASPTR ddPTM_HeLa_CUDC101_4h_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 HGGS(0.988)PQPLAT(0.429)T(0.582)PLS(0.001)QEPVNPPS(0.705)EAS(0.239)PT(0.056)R 120.92 2.84E-13 51309000 1160.2 856.48 682.38 797.4 850.94 890.42 722.54 426.38 1104.3 881.75 TRUE FALSE FALSE 1024.203115 882.8671336 719.2715269 829.9214187 788.1678515 873.436722 750.4086098 474.9173757 1058.780287 876.5053118 1.168507596 1.007258167 0.820612856 0.946852697 0.899216286 0.996499063 0.856136979 0.541830573 1.207956498 1 9.775619024 -3.581300047 0.466594877 1.064149798 2.17E-15 0.631155903 0.108074283 4.206761554 0.390459514 0.025113336 2.835580888 0.000262241 3.581300047 -1.064149798 GDEASEEGQNGS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 GDEASEEGQNGSSPK 15 0 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;P35611-5 E7EV99 ADD1 Alpha-adducin 1 0 GDEASEEGQNGS(0.5)S(0.5)PK 178.67 1.51E-07 178420000 7911.8 5584.2 6732.3 6601.9 5538.6 5571.8 5379.1 3594.5 7400.8 6737.1 TRUE FALSE FALSE 6984.390798 5756.242583 7096.268502 6871.154018 5130.028512 5465.527198 5586.573689 4003.683351 7095.735892 6697.02743 1.042909092 0.859522026 1.059614669 1.026000579 0.766015753 0.81611241 0.83418707 0.597829917 1.059535139 1 12.70930516 -3.579918364 0.423560389 1.021846624 0.067305829 0.716232618 0.078852276 3.236657627 0.258275554 0.018615985 1.762896475 0.000263076 3.579918364 -0.954540795 SAPS(ph)SPAPR ddPTM_HeLa_CUDC101_4h_R1 1 SAPSSPAPR 9 0 E9PAK5;O75064 E9PAK5 DENND4B DENN domain-containing protein 4B 1 0 SAPS(0.5)S(0.5)PAPR 99.815 0.017916 15338000 6625.9 3883.3 5353.4 6049.7 4747.4 4974.8 4536.7 2844.7 5437.6 5664.9 TRUE FALSE FALSE 5849.222046 4002.93987 5642.820997 6296.432915 4397.19376 4879.913979 4711.682039 3168.529149 5213.459826 5631.204923 1.038715892 0.710849618 1.002062804 1.118132443 0.780861968 0.866584336 0.83670939 0.562673387 0.925816037 1 12.45922794 -3.579825278 0.518518446 1.003244859 2.70E-13 0.445647332 0.118733179 4.341247951 0.475085393 0.022680989 3.095744518 0.000263133 3.579825278 -1.003244859 GIWKPET(ph)PQDSSGLAPFK ddPTM_HeLa_CUDC101_4h_R1 1 GIWKPETPQDSSGLAPFK 18 1 Q641Q2;F8W7U3;A0A0A0MR88;A0A096LPC5 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A 1 0 GIWKPET(0.469)PQDS(0.272)S(0.259)GLAPFK 64.538 0.035649 14218000 2429.9 1904.8 2068.2 2020.2 1809.1 1768.3 1551.7 1129.6 2348.7 2231.1 TRUE FALSE FALSE 2145.070805 1963.48463 2180.013148 2102.592488 1675.646297 1734.572624 1611.549589 1258.189098 2251.885592 2217.829318 0.967193818 0.885318187 0.982949017 0.948040713 0.755534379 0.782103749 0.72663373 0.56730655 1.015355678 1 11.11493263 -3.574640412 0.378906417 0.994842152 1.34E-21 0.896795133 0.045327588 1.880945734 0.126309513 0.012323884 0.947987887 0.000266293 3.574640412 -0.994842152 SS(ph)PIMR ddPTM_HeLa_CUDC101_4h_R1 2 SSPIMR 6 0 A0A087WZV0;O43314-2;O43314;A0A087WWN8;K7ENU7;H0Y9S9 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 S(0.019)S(0.981)PIMR;S(0.01)S(0.99)PIMR ; 99.375 0.029787 113520000 4890.2 2830.5 4274.1 4616.5 3789.2 3481.8 3803.2 1542.99 4167.5 5182.9 TRUE FALSE FALSE 4316.978169 2917.70435 4505.170774 4804.780824 3509.678265 3415.390466 3949.890698 1718.637745 3995.713886 5152.07188 0.837911091 0.566316701 0.874438649 0.932591962 0.681216867 0.662915919 0.766660635 0.333581865 0.775554763 1 12.33093701 -3.572238992 0.158816519 1.049632682 5.56E-17 0.339459906 0.149633682 17.44192681 0.378724213 0.319842444 3.842771746 0.000267769 3.572238992 -1.049632682 TLEAEFNSPSPPT(ph)PEPGEGPR ddPTM_HeLa_CUDC101_4h_R1 2 TLEAEFNSPSPPTPEPGEGPR 21 0 A0MZ66-4;A0MZ66;A0MZ66-3;A0MZ66-7;A0MZ66-8;A0MZ66-5;A0MZ66-6 A0MZ66-4 KIAA1598 Shootin-1 1 0 TLEAEFNSPSPPT(1)PEPGEGPR;TLEAEFNSPS(0.001)PPT(0.999)PEPGEGPR ; 116.08 1.10E-05 12334700 4632.3 4150.8 4066.1 4145.2 4581.3 3989 3317.9 2352.74 4101.3 4970.7 TRUE FALSE FALSE 4089.308816 4278.681228 4285.925665 4314.259173 4243.346626 3912.916471 3445.872514 2620.566411 3932.242678 4941.134055 0.827605317 0.865931015 0.867397164 0.873131375 0.858779903 0.79190656 0.697384948 0.530357279 0.79581785 1 12.27062648 -3.571097836 0.483761397 0.91958109 5.38E-46 0.762525658 0.057783433 2.759365912 0.269044494 0.013650313 1.675521623 0.000268474 3.571097836 -0.91958109 SQSEYKPDTPQS(ph)GLEYSGIQELEDR ddPTM_HeLa_CUDC101_4h_R1 1 SQSEYKPDTPQSGLEYSGIQELEDR 25 1 Q16513-3;Q16513-2;Q16513;Q16513-4;Q16513-5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 S(0.001)QS(0.003)EY(0.002)KPDT(0.419)PQS(0.572)GLEYS(0.003)GIQELEDR 65.387 0.0013354 11416000 1619.4 1399.5 944.4 1318.4 1376.8 1283.7 1017.9 610.73 1355.4 1553.8 TRUE FALSE FALSE 1429.576387 1442.616936 995.4571207 1372.170051 1275.236207 1259.215561 1057.160744 680.2530345 1299.529838 1544.557928 0.92555699 0.933999891 0.644493225 0.888390151 0.825631842 0.815259524 0.684442276 0.440419244 0.841360375 1 10.59297826 -3.569434807 0.293201446 0.987996748 2.07E-19 0.585712181 0.101967168 4.915345317 0.22744857 0.041426207 1.874074097 0.000269504 3.569434807 -0.987996748 RNDDISELEDLS(ph)ELEDLKDAK ddPTM_HeLa_CUDC101_4h_R1 5 RNDDISELEDLSELEDLKDAK 21 2 D6RAY8;Q9H4L7;Q9H4L7-2 D6RAY8 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 0 RNDDISELEDLS(1)ELEDLKDAK;RNDDISELEDLS(1)ELEDLKDAK;RNDDISELEDLS(1)ELEDLKDAK;RNDDISELEDLS(1)ELEDLKDAK;RNDDIS(0.001)ELEDLS(0.999)ELEDLKDAK ;;;; 77.795 0.00096464 33641900 7296.15 6097.3 6042.5 6695.17 7801.05 7889.69 9207.4 11519 6499.9 6588.6 TRUE FALSE FALSE 6440.906357 6285.150586 6369.175828 6968.227972 7225.582083 7739.207308 9562.532502 12830.2764 6231.971371 6549.410714 0.983432959 0.959651312 0.972480748 1.063947319 1.103241558 1.181664679 1.460059984 1.95899707 0.951531618 1 12.67714939 -3.568832251 0.765186072 0.988308527 4.056669386 0.99257599 0.026088448 0.34030895 0.067316781 0.004089091 1.148841957 0.000269878 3.568832251 3.068360859 AAGGGAGS(ph)SEDDAQS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 AAGGGAGSSEDDAQSR 16 0 Q9H4A6;D6REM1 Q9H4A6 GOLPH3 Golgi phosphoprotein 3 2 0 AAGGGAGS(0.542)S(0.472)EDDAQS(0.986)R 117.48 0.0065631 4409000 3382.4 2371.5 2351.2 2562.6 2617.7 2466.4 2205.3 1317.5 2422 2811.3 TRUE FALSE FALSE 2985.920199 2444.563104 2478.312984 2667.113905 2424.597486 2419.357529 2290.35916 1467.478874 2322.164135 2794.578263 1.068468985 0.874752064 0.886828978 0.954388696 0.867607653 0.865732609 0.819572381 0.525116399 0.830953338 1 11.44841486 -3.566510067 0.423907246 1.024162768 7.94E-17 0.568661266 0.089750827 2.863760165 0.226865933 0.017326845 1.679436452 0.000271325 3.566510067 -1.024162768 LQQQAALSPT(ph)TAPAVSSVSK ddPTM_HeLa_CUDC101_4h_R1 1 LQQQAALSPTTAPAVSSVSK 20 0 A0A0U1RRM1;Q8WXI9;A0A0U1RR30 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 0 LQQQAALS(0.282)PT(0.483)T(0.235)APAVSSVSK 150.23 8.37E-05 20360000 5026.6 4283.3 3790.5 4647.7 4413.2 3967.3 3809.2 2325.5 5254 5344 TRUE FALSE FALSE 4437.389568 4415.263396 3995.425896 4837.253295 4087.647028 3891.630362 3956.12212 2590.22552 5037.427896 5312.21365 0.835318355 0.831153204 0.752120709 0.910590879 0.769480917 0.732581673 0.744721952 0.487598145 0.948272835 1 12.37509746 -2.696467512 0.145018914 1.04138457 1.45E-20 0.731399994 0.070461111 17.08203139 0.257675322 0.200667922 3.473850043 0.002011558 2.696467512 -1.04138457 down SQWES(ph)PSPTPSYR ddPTM_HeLa_CUDC101_4h_R1 2 SQWESPSPTPSYR 13 0 Q92620 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 1 0 SQWES(0.404)PS(0.127)PT(0.064)PS(0.404)YR;SQWES(0.881)PS(0.118)PT(0.001)PSYR ; 145.71 0.00053575 16092500 2730.8 2163.85 2235.08 2068.16 2651.3 2031.24 1865.77 1195.21 2650.9 2636.5 TRUE FALSE FALSE 2410.699764 2230.515654 2355.915186 2152.508504 2455.718881 1992.497481 1937.733374 1331.267875 2541.62878 2620.817981 0.919827238 0.851076141 0.89892362 0.821311713 0.937004744 0.760257864 0.739362057 0.507958922 0.969784548 1 11.35580144 -3.564421189 0.41130506 0.963513819 1.09E-32 0.842793177 0.054495141 2.422339162 0.183015533 0.014099675 1.294033821 0.000272633 3.564421189 -0.963513819 QLENTISEMS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 QLENTISEMSPK 12 0 Q5T5P2;Q5T5P2-3 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 QLENTISEMS(1)PK 108.23 0.0061974 11294000 2178.3 2280.6 1864.1 2147.2 2023.9 1666.8 1802.7 1053.7 1856.1 2352.7 TRUE FALSE FALSE 1922.962976 2350.862583 1964.878885 2234.772097 1874.600929 1635.008567 1872.230743 1173.648949 1779.590772 2338.706036 0.822233725 1.00519798 0.840156417 0.955559212 0.801554749 0.6991082 0.800541288 0.501836884 0.760929653 1 11.19149482 -3.562581829 0.473025053 0.927645835 6.06E-23 0.58432214 0.092428421 3.629480515 0.339646264 0.018158333 2.173611747 0.00027379 3.562581829 -0.927645835 GSET(ph)PGATPGSK ddPTM_HeLa_CUDC101_4h_R1 4 GSETPGATPGSK 12 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 GSET(0.999)PGAT(0.001)PGSK;GS(0.014)ET(0.986)PGATPGSK;GS(0.077)ET(0.922)PGATPGSK;GS(0.216)ET(0.783)PGAT(0.002)PGSK ;;; 195.72 1.94E-15 911652000 41240.1 27533.3 31799.1 31597.9 32069.6 30021.2 30742.2 19293 29070.4 30857.9 TRUE FALSE FALSE 36405.99799 28381.56834 33518.25553 32886.59894 29703.8895 29448.59563 31927.93695 21489.23714 27872.10581 30674.35584 1.186854524 0.925253932 1.092712613 1.072120279 0.968362291 0.960039578 1.040867398 0.700560339 0.908645187 1 14.90474543 -3.562564632 0.845666364 1.071592588 6.36E-38 0.411488929 0.09535021 3.873831669 0.879116218 0.014668144 5.136553949 0.000273801 3.562564632 -1.071592588 TAQEVETYRR ddPTM_HeLa_CUDC101_4h_R1 2 TAQEVETYRR 10 1 P17844-2;P17844;J3KTA4;J3QR02;J3KRX8;J3QRQ7;J3KTQ4 P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 0 0 ; ; 107.34 0.0098094 30005000 5522.2 5697 5519.1 5720.3 6512.8 5362.8 5677.5 5348.4 5371.3 4911 FALSE FALSE TRUE 4874.896087 5872.517817 5817.47924 5953.598559 6032.363719 5260.513525 5896.483077 5957.240237 5149.892741 4881.789154 0.998588004 1.202943764 1.1916695 1.21955258 1.235687067 1.07757901 1.207852878 1.220298552 1.054919125 1 12.25319427 -7.263233163 24.93165714 0.99933322 1.192272737 0.761398338 0.044740206 41.95729935 583159.4644 0.006811078 0.008006955 5.45E-08 7.263233163 0.192939517 LQQTVPADAS(ph)PDSK ddPTM_HeLa_CUDC101_4h_R1 2 LQQTVPADASPDSK 14 0 Q9NS56-2;Q9NS56 Q9NS56-2 TOPORS E3 ubiquitin-protein ligase Topors 1 0 LQQTVPADAS(1)PDSK;LQQT(0.001)VPADAS(0.932)PDS(0.067)K ; 160.03 4.94E-05 60430000 13808.5 12374.1 12699.4 12646.5 13393.3 11896.9 10584.1 7678.8 11995.3 14067.2 TRUE FALSE FALSE 12189.88856 12755.33135 13385.96798 13162.27893 12405.30294 11669.98645 10992.33228 8552.923553 11500.84866 13983.52767 0.871732001 0.91216835 0.957266885 0.941270275 0.887136868 0.834552391 0.786091503 0.611642767 0.822456889 1 13.77144074 -3.561848416 0.66127521 0.939900861 2.96E-13 0.775121156 0.049373618 2.086329538 0.328550205 0.008406795 1.833594345 0.000274253 3.561848416 -0.939900861 ESVASMGADS(ph)GDDFASDGSSSR ddPTM_HeLa_CUDC101_4h_R1 2 ESVASMGADSGDDFASDGSSSR 22 0 Q92805;Q5T165 Q92805 GOLGA1 Golgin subfamily A member 1 1 0 ESVASMGADS(1)GDDFASDGSSSR;ESVASMGADS(1)GDDFASDGSSSR ; 262.37 8.06E-73 21694800 4281.3 4422.3 3884.1 3478.6 3863.8 3782.8 3480 2430.1 4689.4 3920.1 TRUE FALSE FALSE 3779.452504 4558.545821 4094.086195 3620.472344 3578.775172 3710.649393 3614.224766 2706.732761 4496.100947 3896.783071 0.969890403 1.169822836 1.050632309 0.929092607 0.918392199 0.952234016 0.927489342 0.69460699 1.153798111 1 11.92806791 -3.558975325 0.901636828 0.99856468 3.28E-15 0.582101495 0.082527809 3.309007366 0.817070272 0.010848904 4.412763212 0.000276073 3.558975325 -0.99856468 DKVTIADDYS(ph)DPFDAK ddPTM_HeLa_CUDC101_4h_R1 1 DKVTIADDYSDPFDAK 16 1 Q15464;Q15464-2 Q15464 SHB SH2 domain-containing adapter protein B 1 0 DKVTIADDY(0.44)S(0.56)DPFDAK 62.237 0.029695 3931300 2630.8 2441.7 2203.7 2843.8 2636.9 2322.5 1633.5 1136.7 2561.5 3215.6 TRUE FALSE FALSE 2322.421612 2516.925883 2322.838688 2959.782456 2442.38114 2278.202182 1696.504642 1266.097333 2455.913886 3196.473468 0.72655745 0.787407093 0.72668793 0.925952455 0.764086161 0.712723633 0.530742601 0.396091926 0.768319809 1 11.6422654 -3.558546443 0.193356584 0.967335794 1.89E-67 0.565395569 0.108042623 11.37011175 0.307985675 0.151971386 2.778619627 0.000276346 3.558546443 -0.967335794 SEEISES(ph)ESEETNAPK ddPTM_HeLa_CUDC101_4h_R1 1 SEEISESESEETNAPK 16 0 P54259 P54259 ATN1 Atrophin-1 1 0 SEEIS(0.072)ES(0.894)ES(0.019)EET(0.015)NAPK 250.46 6.47E-56 21668000 2176.4 2236.4 1995.7 1942.3 2524.9 1632.3 1608.8 1206.3 2345.2 2467.1 TRUE FALSE FALSE 1921.285691 2305.300833 2103.593579 2021.515389 2338.643157 1601.166597 1670.851955 1343.620316 2248.529863 2452.425579 0.783422627 0.940008477 0.857760413 0.824292246 0.953604128 0.652891003 0.681305875 0.547874042 0.91685957 1 11.25999364 -3.547084501 0.440530498 0.910440479 4.21E-31 0.721418316 0.074241801 4.196416912 0.34818282 0.02126223 2.289938648 0.000283737 3.547084501 -0.910440479 LGAPENSGIST(ph)LER ddPTM_HeLa_CUDC101_4h_R1 4 LGAPENSGISTLER 14 0 C9JME2;Q9Y4F1;Q9Y4F1-2;M0QYB0;Q9Y4F1-3;A0A1B0GV68 C9JME2;A0A1B0GV68 FARP1 "FERM, RhoGEF and pleckstrin domain-containing protein 1" 1 0 LGAPENSGIS(0.001)T(0.999)LER;LGAPENSGIST(1)LER;LGAPENSGIS(0.027)T(0.973)LER;LGAPENSGIS(0.002)T(0.998)LER ;;; 241.39 2.26E-43 197187000 16108 14115.8 9869 12608.1 14506.6 12559.3 11351.2 8446.9 9520.7 12329 TRUE FALSE FALSE 14219.84466 14550.69107 10402.54799 13122.31281 13436.47702 12319.75228 11789.01959 9408.460952 9128.252716 12255.66656 1.160266934 1.187262316 0.848794959 1.070713922 1.096348122 1.005229068 0.961923983 0.767682517 0.744818951 1 13.58116133 -3.547018346 0.895533674 1.070956264 1.14E-16 0.148496143 0.135619309 4.425494239 1.064280562 0.015084267 6.312107669 0.00028378 3.547018346 -1.070956264 S(ph)PQPESFK ddPTM_HeLa_CUDC101_4h_R1 2 SPQPESFK 8 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 S(1)PQPESFK;S(1)PQPESFK ; 101.66 0.017319 13026800 9997.6 7798.5 7760.1 8281.8 6789.9 7860.3 6612.2 4656.8 6808.6 7560 TRUE FALSE FALSE 8825.696483 8038.762542 8179.634479 8619.567601 6289.022604 7710.377874 6867.234769 5186.911289 6527.946626 7515.032784 1.174405586 1.069690948 1.0884363 1.146976713 0.836858971 1.025993911 0.913799709 0.690204745 0.868651783 1 12.87556368 -3.546949914 0.634411408 1.083806708 2.74E-14 0.46177512 0.106117167 3.469924697 0.505350482 0.016063977 3.372337225 0.000283825 3.546949914 -1.083806708 S(ph)LSAS(ph)PALGSTK ddPTM_HeLa_CUDC101_4h_R1 1 SLSASPALGSTK 12 0 O95544;O95544-2 O95544 NADK NAD kinase 2 0 S(0.998)LS(0.008)AS(0.986)PALGS(0.007)T(0.001)K 101.2 0.0022193 0 4243.6 3900.1 3857.2 3279.2 3726.8 3741.6 3415.4 2358.6 3959.4 3867.2 TRUE FALSE FALSE 3746.171641 4020.257458 4065.731899 3412.93995 3451.881389 3670.235214 3547.133122 2627.09349 3796.191856 3844.197722 0.97450025 1.045798824 1.057628195 0.887815923 0.897945849 0.954746732 0.922723902 0.683391875 0.987512124 1 11.90846683 -3.545335666 0.886397318 0.987857934 1.06E-38 0.741008108 0.051628483 2.621694827 0.62028871 0.008288004 3.410315948 0.000284882 3.545335666 -0.987857934 DEDMLYS(ph)PELAQR ddPTM_HeLa_CUDC101_4h_R1 4 DEDMLYSPELAQR 13 0 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 1 0 DEDMLYS(1)PELAQR;DEDMLYS(1)PELAQR;DEDMLYS(1)PELAQR;DEDMLYS(1)PELAQR ;;; 247.73 9.41E-56 61013900 15620 13349.3 12262.2 10578.4 12427.4 11597.2 9856.3 7189.4 14011.1 13019.9 TRUE FALSE FALSE 13789.04728 13760.57611 12925.13162 11009.83288 11510.65546 11376.00273 10236.46079 8007.812235 13433.55653 12942.45706 1.065411863 1.063212035 0.998661349 0.850675635 0.889371733 0.878967779 0.790920978 0.618724265 1.037944841 1 13.65982391 -3.543622534 0.431772687 1.036416096 0.025433814 0.882617562 0.046348246 2.25339803 0.180914953 0.012824872 1.336836387 0.000286008 3.543622534 -1.010982282 ASSTS(ph)TPEPTR ddPTM_HeLa_CUDC101_4h_R1 4 ASSTSTPEPTR 11 0 A0A0U1RRM6;Q8N8S7-3;Q8N8S7-2;Q8N8S7 A0A0U1RRM6 ENAH Protein enabled homolog 1 0 ASST(0.04)S(0.48)T(0.48)PEPTR;ASST(0.035)S(0.482)T(0.482)PEPTR;ASST(0.001)S(0.499)T(0.499)PEPTR;ASST(0.073)S(0.463)T(0.463)PEPTR ;;; 166.69 2.55E-05 1046482100 28315.94 19063.82 23668.4 24426.7 21984.93 19566.59 19629.66 11940.19 24770.8 25833.8 TRUE FALSE FALSE 24996.78844 19651.1537 24947.9853 25422.92641 20363.14551 19193.3899 20386.78256 13299.41297 23749.73714 25680.13941 0.973389904 0.765227688 0.971489481 0.989983972 0.792953075 0.747402091 0.793873516 0.517887102 0.92482898 1 14.64836541 -3.542093305 0.385302449 0.989237086 2.11E-15 0.680955228 0.082250376 3.479834515 0.235126661 0.02139827 1.785647829 0.000287016 3.542093305 -0.989237086 SNS(ph)WVNTGGPK ddPTM_HeLa_CUDC101_4h_R1 2 SNSWVNTGGPK 11 0 Q96N67-2;Q96N67-6;Q96N67;A0A1B0GWE0;A0A0U1RRC1 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 SNS(0.537)WVNT(0.463)GGPK;S(0.042)NS(0.908)WVNT(0.05)GGPK ; 119.96 0.00425 137814000 7894.8 5707.9 6278.1 6214.9 7363.4 7640.7 7378.1 8708.9 6412.6 6672 TRUE FALSE FALSE 6969.383512 5883.753633 6617.513076 6468.370485 6820.216652 7494.966378 7662.675788 9700.285973 6148.269914 6632.314647 1.050822206 0.887134273 0.997768265 0.975281004 1.028331286 1.130067974 1.155354683 1.462579279 0.927017224 1 12.69529674 -3.538749184 0.900995667 1.008061522 2.636345404 0.878047953 0.054027696 1.585317859 0.379834595 0.007948241 3.475097432 0.000289235 3.538749184 1.628283883 HS(ph)PVQMNR ddPTM_HeLa_CUDC101_4h_R1 1 HSPVQMNR 8 0 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 0 HS(1)PVQMNR 99.973 0.018867 10777000 2112.6 1368.6 1842.9 1899.5 1361.3 1263.1 1541 1005.4 2010 2018.7 TRUE FALSE FALSE 1864.96423 1410.764944 1942.532748 1976.96982 1260.879611 1239.008472 1600.436886 1119.850672 1927.146949 2006.692683 0.929372119 0.703029894 0.968027025 0.985188134 0.628337175 0.617438077 0.79754957 0.558057884 0.960359783 1 10.97060398 -3.537485231 0.215866746 1.023796436 0.085509903 0.535037358 0.112778948 9.553942895 0.293106887 0.106781913 2.528367363 0.000290078 3.537485231 -0.938286533 VADNS(ph)FDAK ddPTM_HeLa_CUDC101_4h_R1 2 VADNSFDAK 9 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 0 VADNS(1)FDAK;VADNS(1)FDAK ; 135.1 0.002521 283896800 10938.1 9625.4 8806.3 8944.5 8801.3 9576.8 7966.5 4958.6 9614.3 10329.9 TRUE FALSE FALSE 9655.952499 9921.947165 9282.395216 9309.295371 8152.045634 9394.138496 8273.770574 5523.066981 9217.994485 10268.4573 0.940350845 0.966254899 0.903971741 0.906591429 0.793891955 0.914853928 0.805746212 0.537867259 0.897700036 1 13.32593183 -3.536656224 0.518319047 0.968969345 2.73E-33 0.776197277 0.05918433 2.342300353 0.247716204 0.010966733 1.629856033 0.000290632 3.536656224 -0.968969345 QS(ph)PPISTSK ddPTM_HeLa_CUDC101_4h_R1 1 QSPPISTSK 9 0 P33981-2;P33981 P33981-2 TTK Dual specificity protein kinase TTK 1 0 QS(0.997)PPIS(0.003)TSK 97.779 0.019825 37728000 6243.1 4620.9 4632.1 5100.4 4874.5 4346.1 3839 2767.1 4654.2 5771.3 TRUE FALSE FALSE 5511.293282 4763.264452 4882.525337 5308.416358 4514.917846 4263.205384 3987.071516 3082.095479 4462.351906 5736.972051 0.96066239 0.830274997 0.851063121 0.925299324 0.786986202 0.743110712 0.694978375 0.537233832 0.777823539 1 12.48607377 -3.530112993 0.297463447 1.002193072 7.07E-17 0.611203868 0.080784588 2.339561978 0.108423985 0.01888766 0.923043216 0.000295044 3.530112993 -1.002193072 GDS(ph)GAAPDVDDK ddPTM_HeLa_CUDC101_4h_R1 1 GDSGAAPDVDDK 12 0 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 GDS(1)GAAPDVDDK 133.98 1.64E-05 0 2934.7 2139 2316.4 2195.9 2312.4 2044.1 1770.5 1352.1 2454.8 2527.9 TRUE FALSE FALSE 2590.698915 2204.900055 2441.631591 2285.458293 2141.818859 2005.112198 1838.788778 1506.017599 2353.612105 2512.863938 1.030974608 0.877445062 0.971652923 0.909503399 0.852341755 0.797939024 0.731750235 0.599323177 0.936625366 1 11.29511684 -3.527141296 0.370502023 1.01979335 4.08E-19 0.882679465 0.042928517 1.653565997 0.104546747 0.010680063 0.84055651 0.00029707 3.527141296 -1.01979335 VVEAVNS(ph)DSDSEFGIPK ddPTM_HeLa_CUDC101_4h_R1 1 VVEAVNSDSDSEFGIPK 17 0 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 0 VVEAVNS(0.996)DS(0.004)DSEFGIPK 140.89 0.00019695 14267000 10337 9640.7 8404.1 9630 8651.1 8766.6 6982.9 5321.2 9600.7 10294 TRUE FALSE FALSE 9125.31253 9937.71854 8858.451067 10022.75302 8012.925588 8599.391711 7252.232792 5926.943899 9204.955082 10232.77083 0.89177337 0.971165944 0.865694269 0.979475959 0.783065088 0.840377631 0.708726201 0.579212024 0.899556458 1 13.32090923 -3.527087605 0.459945696 0.955849616 3.62E-17 0.82493588 0.052294702 2.300849261 0.201157791 0.011464746 1.387677898 0.000297107 3.527087605 -0.955849616 S(ph)TGVVNIPAAECLDEYEDDEAGQKER ddPTM_HeLa_CUDC101_4h_R1 1 STGVVNIPAAECLDEYEDDEAGQKER 26 1 Q96IZ0;H0YI16 Q96IZ0 PAWR PRKC apoptosis WT1 regulator protein 1 0 S(0.758)T(0.242)GVVNIPAAECLDEYEDDEAGQKER 96.022 2.78E-06 8020100 928.93 719.66 583.5 687.2 948.81 668.85 567.01 365.64 641.22 890.35 TRUE FALSE FALSE 820.0422336 741.8318716 615.045775 715.2269863 878.8181766 656.0928006 588.8797656 407.2629796 614.7886402 885.0541586 0.926544693 0.83817681 0.694924451 0.808116633 0.992954124 0.741302432 0.665360148 0.460155998 0.694633921 1 9.78962193 -3.52676331 0.285808719 0.986813524 2.10E-23 0.312369092 0.131327376 5.825042323 0.255251068 0.048341734 2.169879208 0.000297329 3.52676331 -0.986813524 T(ph)PDTSTYCYETAEK ddPTM_HeLa_CUDC101_4h_R1 4 TPDTSTYCYETAEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.988)PDT(0.01)S(0.001)TYCYETAEK;T(1)PDTSTYCYETAEK;T(1)PDTSTYCYETAEK;T(0.998)PDT(0.002)STYCYETAEK ;;; 230.26 3.21E-33 342680000 8142.4 6576.51 5973.92 6379.05 6152.11 6590.3 5454.14 4355.84 8280.3 5746.37 TRUE FALSE FALSE 7187.960215 6779.124478 6296.888185 6639.215232 5698.281102 6464.601008 5664.508007 4851.691219 7938.982529 5712.190336 1.258354465 1.186781966 1.102359658 1.162288867 0.997564991 1.131720168 0.991652532 0.849357415 1.389831582 1 12.47982834 -3.525269403 0.816155826 1.12786751 0.155657651 0.427751547 0.111195141 5.17665993 1.064290969 0.016497619 6.066058073 0.000298353 3.525269403 -0.972209859 S(ph)QEGLRPR ddPTM_HeLa_CUDC101_4h_R1 3 SQEGLRPR 8 1 Q27J81-2 Q27J81-2 INF2 Inverted formin-2 1 0 S(1)QEGLRPR;S(1)QEGLRPR;S(1)QEGLRPR ;; 82.494 0.022036 232843000 5306.2 3387.93 4425.9 4586.7 4093.8 3122.95 3629 2295.94 4153.7 5177.9 TRUE FALSE FALSE 4684.21528 3492.308108 4665.177542 4773.765451 3791.80853 3063.384932 3768.971746 2557.300529 3982.482728 5147.101621 0.910068544 0.678499934 0.906369815 0.927466719 0.736688103 0.595166981 0.732251279 0.496842829 0.773733068 1 12.32954455 -3.524431421 0.221896109 1.014399014 1.79E-16 0.442759483 0.113624811 6.944546683 0.219280913 0.080279678 2.044714548 0.000298929 3.524431421 -1.014399014 FYQGLPWGVSS(ph)LPR ddPTM_HeLa_CUDC101_4h_R1 1 FYQGLPWGVSSLPR 14 0 Q5JTC6 Q5JTC6 AMER1 APC membrane recruitment protein 1 1 0 FYQGLPWGVS(0.016)S(0.984)LPR 156.17 7.21E-05 15945000 3098 2350.8 2121.1 2040.3 2669.5 2278 2115.4 1417.6 1922.9 2302.3 TRUE FALSE FALSE 2734.857136 2423.225362 2235.773082 2123.512253 2472.576303 2234.550945 2196.991687 1578.973854 1843.637248 2288.605817 1.194988283 1.058821639 0.976914882 0.927862822 1.080385397 0.976380873 0.959969458 0.689928271 0.805572211 1 11.16025328 -3.522583485 0.687368688 1.077081464 2.52E-22 0.28807004 0.112871605 3.881387978 0.622011414 0.015892034 4.136982565 0.000300204 3.522583485 -1.077081464 TS(ph)DVGGYYYEK ddPTM_HeLa_CUDC101_4h_R1 1 TSDVGGYYYEK 11 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.212)S(0.788)DVGGYYYEK 114.87 0.0055951 88446000 5734.5 4424.5 4417.9 4408.2 4873.4 4201.1 4258.7 2563.8 5124.5 4807.9 TRUE FALSE FALSE 5062.310603 4560.813601 4656.745037 4587.98545 4513.898991 4120.971017 4422.959486 2855.652629 4913.265941 4779.302397 1.05921538 0.954284375 0.974356643 0.959969692 0.944468171 0.862253667 0.925440392 0.597504069 1.028029937 1 12.22258434 -3.519470614 0.589390128 1.01880625 5.38E-20 0.822282312 0.051636572 2.164185415 0.274657908 0.00938665 1.835251888 0.000302364 3.519470614 -1.01880625 RGS(ph)IGENQGEEKGTK ddPTM_HeLa_CUDC101_4h_R1 1 RGSIGENQGEEKGTK 15 2 E7EX44;Q05682-3;Q05682-6;Q05682-2 E7EX44 CALD1 Caldesmon 1 0 RGS(1)IGENQGEEKGTK 56.817 0.031544 17025000 1132.9 1666 1676.3 1763.6 3496.1 2068 2473.4 3586.8 2050.9 723.25 TRUE FALSE FALSE 1000.103179 1717.327485 1766.925849 1835.527231 3238.199668 2028.556346 2568.799867 3995.106814 1966.361034 718.9480768 1.391064545 2.388666916 2.457654322 2.553073428 4.50408002 2.821561683 3.572997758 5.556878087 2.735052916 1 9.489743771 -3.515740599 0.221647685 0.663585664 10.20732927 0.574009373 0.84048049 4.966918633 0.156097642 0.537055781 13.75130834 0.000304972 3.515740599 9.543743606 LLQAQGVEVPSKDS(ph)LPK ddPTM_HeLa_CUDC101_4h_R1 2 LLQAQGVEVPSKDSLPK 17 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 LLQAQGVEVPS(0.027)KDS(0.973)LPK;LLQAQGVEVPS(0.252)KDS(0.748)LPK ; 81.016 0.0064897 35774000 3846.1 3101.4 3168.3 3022.2 2924.5 2957.3 2209.6 2139.64 3356.8 4016.5 TRUE FALSE FALSE 3395.265988 3196.950458 3339.587882 3145.458379 2708.765461 2900.89443 2294.825012 2383.207969 3218.431283 3992.609679 0.850387656 0.800717003 0.836442365 0.787820156 0.678444847 0.726565996 0.574768183 0.596904822 0.80609715 1 11.96311632 -3.513181338 0.145482247 1.080600243 3.26E-14 0.694687099 0.066423917 5.221198218 0.100982133 0.104394 1.095254932 0.000306774 3.513181338 -1.080600243 ERDHS(ph)PTPSVFNSDEER ddPTM_HeLa_CUDC101_4h_R1 4 ERDHSPTPSVFNSDEER 17 1 Q6UN15;Q6UN15-5;Q6UN15-3 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 ERDHS(0.498)PT(0.498)PS(0.003)VFNSDEER;ERDHS(0.895)PT(0.035)PS(0.069)VFNSDEER;ERDHS(0.717)PT(0.283)PSVFNSDEER;ERDHS(0.333)PT(0.333)PS(0.333)VFNSDEER ;;; 99.343 0.0016001 132768000 10895.8 10017.2 10060.6 9294.7 10351.9 9314.2 8153 8079.9 11170.8 11301.5 TRUE FALSE FALSE 9618.610841 10325.81806 10604.50647 9673.778041 9588.260961 9136.547154 8467.463941 8999.683156 10710.3349 11234.27818 0.856184144 0.919134981 0.943941952 0.861094758 0.853482601 0.813274072 0.753716777 0.801091358 0.953362088 1 13.45561981 -3.512098348 0.03428766 1.548023754 6.32E-12 0.744542679 0.03695376 227.215575 1.000044919 16.57226521 30.36833858 0.00030754 3.512098348 -1.548023754 FGQAATMEGIGAIGGT(ph)PPAFNR ddPTM_HeLa_CUDC101_4h_R1 10 FGQAATMEGIGAIGGTPPAFNR 22 0 Q15233;Q15233-2 Q15233 NONO Non-POU domain-containing octamer-binding protein 1 0 FGQAAT(0.361)MEGIGAIGGT(0.639)PPAFNR;FGQAAT(0.004)MEGIGAIGGT(0.996)PPAFNR;FGQAAT(0.049)MEGIGAIGGT(0.951)PPAFNR;FGQAAT(0.001)MEGIGAIGGT(0.999)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAAT(0.001)MEGIGAIGGT(0.999)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR ;;;;;;;;; 237.14 2.10E-45 867098000 12664.57 11683.5 11146.91 10399.84 11786.32 10769.443 9884.35 6213.47 13819.92 12779.94 TRUE FALSE FALSE 11180.0483 12043.45479 11749.54567 10823.99043 10916.86666 10564.03382 10265.59269 6920.786309 13250.25705 12703.92435 0.880046826 0.948010588 0.924875287 0.852019434 0.859330263 0.831556732 0.80806469 0.544775466 1.043005034 1 13.63298661 -3.509129949 0.535947041 0.943221153 7.65E-35 0.82387621 0.054321667 2.445144561 0.266264481 0.010347361 1.730819963 0.000309649 3.509129949 -0.943221153 AVVLPGGTATS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 AVVLPGGTATSPK 13 0 Q8N1G0;F8WCX2;Q8N1G0-2;H0Y5I5 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 AVVLPGGTAT(0.091)S(0.909)PK;AVVLPGGTAT(0.048)S(0.952)PK ; 137.4 0.00084485 36047000 9998.8 8638.7 8109.9 8811.6 9210.2 8931.9 6188.3 5311.3 9743.3 10117 TRUE FALSE FALSE 8826.755821 8904.848108 8548.345725 9170.975135 8530.781895 8761.538889 6426.984804 5915.916923 9341.67705 10056.82363 0.877688239 0.885453343 0.850004538 0.911915677 0.848258079 0.871203395 0.639067069 0.588249047 0.928889418 1 13.29588709 -3.508892117 0.448510904 0.943783462 2.74E-34 0.838359034 0.048754448 2.700271607 0.224424143 0.013193254 1.570205696 0.000309819 3.508892117 -0.943783462 LSS(ph)SSATLLNS(ph)PDR ddPTM_HeLa_CUDC101_4h_R1 1 LSSSSATLLNSPDR 14 0 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40 Q14244-5 MAP7 Ensconsin 2 0 LS(0.011)S(0.673)S(0.316)SATLLNS(1)PDR 158.65 0.00055328 19715000 3322.3 2452.7 2861.1 2713.3 3092.4 3731.9 3888.1 4827.3 2612.3 2575.1 TRUE FALSE FALSE 2932.86503 2528.26478 3015.77972 2823.960102 2864.279813 3660.720225 4038.065319 5376.820319 2504.619888 2559.783191 1.145747437 0.987687078 1.178138731 1.103202846 1.118954067 1.430089954 1.577502866 2.100498331 0.97845001 1 11.32180591 -3.506122501 0.668892094 1.063161025 4.310050333 0.957908353 0.068703216 0.98483242 0.149032794 0.011963908 3.084010336 0.000311801 3.506122501 3.246889308 up QQFSPS(ph)MTER ddPTM_HeLa_CUDC101_4h_R1 1 QQFSPSMTER 10 0 Q8TDB6 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 1 0 QQFS(0.082)PS(0.836)MT(0.082)ER 87.831 0.031764 12710000 2297 1706.3 1680.7 1828.5 1907.9 1409.3 1483 1140.5 2303 2293.4 TRUE FALSE FALSE 2027.749142 1758.869081 1771.563726 1903.074133 1767.158018 1382.419951 1540.199807 1270.32991 2208.069365 2279.758755 0.889457772 0.771515441 0.777083857 0.834769964 0.775151324 0.606388701 0.675597716 0.5572212 0.968553958 1 11.15466545 -3.499219191 0.160581407 1.069411154 7.14E-14 0.887112333 0.046239239 5.917750798 0.12701377 0.104044506 1.34272385 0.000316797 3.499219191 -1.069411154 GPASTPTYS(ph)PAPTQPAPR ddPTM_HeLa_CUDC101_4h_R1 1 GPASTPTYSPAPTQPAPR 18 0 Q6P1N0;Q6P1N0-2;K7EJY5 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 GPASTPT(0.002)YS(0.998)PAPTQPAPR 184.92 3.65E-11 17797000 1968.7 1721.3 1341.9 1230.1 1863.8 1572.5 1269.8 866.24 1677.4 1703.8 TRUE FALSE FALSE 1737.93197 1774.331213 1414.447173 1280.268795 1726.311187 1542.507182 1318.776611 964.8492601 1608.256862 1693.665722 1.026136355 1.047627752 0.835139517 0.755915868 1.019275035 0.910750665 0.778652242 0.569681046 0.949571596 1 10.72593344 -3.497459056 0.461490273 1.007088508 7.85E-27 0.601753402 0.09191878 4.138893494 0.356277387 0.02069068 2.65677453 0.000318083 3.497459056 -1.007088508 T(ph)PENLITEIR ddPTM_HeLa_CUDC101_4h_R1 3 TPENLITEIR 10 0 Q7Z4H7-3;Q7Z4H7;Q5VY60;Q5SYF9 Q7Z4H7-3 HAUS6 HAUS augmin-like complex subunit 6 1 0 T(1)PENLITEIR;T(1)PENLITEIR;T(1)PENLITEIR ;; 158.86 0.00036428 35670000 1476.43 1316.78 1275.04 989.33 1288.33 1206.09 899.63 739.4 1350.2 1348.28 TRUE FALSE FALSE 1303.365114 1357.348431 1343.972519 1029.679154 1193.292463 1183.085843 934.3290305 823.5703072 1294.544185 1340.260371 0.972471575 1.012749807 1.002769722 0.768267999 0.890343764 0.882728363 0.697125015 0.614485308 0.965890071 1 10.38829758 -3.490507522 0.416249786 0.995982633 5.32E-17 0.805420408 0.05910867 2.64909521 0.194574027 0.014217663 1.503065017 0.000323216 3.490507522 -0.995982633 EYGSQEGKHDYDDSS(ph)EEQSAEDSYEASPGSETQR ddPTM_HeLa_CUDC101_4h_R1 1 EYGSQEGKHDYDDSSEEQSAEDSYEASPGSETQR 34 1 P98175-5;P98175-2;P98175 P98175-5 RBM10 RNA-binding protein 10 1 0 EY(0.001)GSQEGKHDY(0.001)DDS(0.137)S(0.822)EEQS(0.04)AEDSYEASPGSETQR 111.52 2.09E-15 6289100 764.51 599.63 685.4 598.54 770.36 613.45 582.06 389.59 773.66 749.24 TRUE FALSE FALSE 674.8952967 618.1038896 722.4547972 622.9510483 713.5320776 601.7494633 604.5102492 433.9393508 741.7694073 744.7834872 0.906163077 0.82991084 0.970019891 0.836418985 0.958039605 0.807952209 0.811659039 0.582638254 0.995953079 1 9.540677277 -3.489583454 0.571042369 0.947028338 6.89E-38 0.7447878 0.060704682 2.91856987 0.343959321 0.011367944 2.238797761 0.000323904 3.489583454 -0.947028338 AHS(ph)PAEGASVESS(ph)SPGPK ddPTM_HeLa_CUDC101_4h_R1 1 AHSPAEGASVESSSPGPK 18 0 C9J4C4;Q8NFG4-3;Q8NFG4-2;Q8NFG4 C9J4C4 FLCN Folliculin 2 0 AHS(1)PAEGASVES(0.009)S(0.645)S(0.345)PGPK 152.38 0.00017634 17781000 4329.9 3582.5 3652.1 3254 4544.1 3572.6 3340.4 2523.3 3855.4 3941.4 TRUE FALSE FALSE 3822.355686 3692.872579 3849.543573 3386.712185 4208.890796 3504.458607 3469.240347 2810.542272 3696.47878 3917.956378 0.975599348 0.942550713 0.982538651 0.864407834 1.074256676 0.894460854 0.885471918 0.717349047 0.943471143 1 11.93588562 -3.489383499 0.854567599 0.981069679 2.57E-16 0.648810479 0.054190045 2.783165962 0.580084098 0.007648307 3.525045595 0.000324053 3.489383499 -0.981069679 VGDGDLS(ph)AEEIPENEVSLR ddPTM_HeLa_CUDC101_4h_R1 1 VGDGDLSAEEIPENEVSLR 19 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VGDGDLS(1)AEEIPENEVSLR 229.22 6.02E-34 63402000 2056.7 1621.8 1493.8 1541 1277 1671.4 1413.3 731.44 1490.6 1892.5 TRUE FALSE FALSE 1815.616744 1671.765736 1574.559346 1603.848641 1182.798254 1639.52083 1467.811454 814.704173 1429.156837 1881.243326 0.965115314 0.888649391 0.836978037 0.852547153 0.6287322 0.871509181 0.78023477 0.433066878 0.759687393 1 10.87747075 -3.487337048 0.264132497 1.01568092 1.04E-18 0.419035635 0.120594316 5.629967095 0.218350285 0.050877051 1.994289067 0.000325584 3.487337048 -1.01568092 NLSFNELYPS(ph)GTLK ddPTM_HeLa_CUDC101_4h_R1 1 NLSFNELYPSGTLK 14 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 NLS(0.45)FNELY(0.009)PS(0.54)GT(0.001)LK 157.09 6.67E-05 41171000 4597.8 3704.4 3542 3344.4 3129.3 3150.9 3497.1 1677.6 3637 3824.1 TRUE FALSE FALSE 4058.852854 3818.528173 3733.491234 3480.799088 2898.457773 3090.801832 3631.984318 1868.571203 3487.081321 3801.354083 1.067738697 1.004517887 0.982147717 0.915673471 0.762480345 0.813079172 0.955444886 0.491554105 0.917326101 1 11.8922977 -3.487196148 0.39305028 1.036461946 1.82E-20 0.594959398 0.101012322 4.224352948 0.284565406 0.024823853 2.343580031 0.00032569 3.487196148 -1.036461946 GSSPSIRPIQGSQGSS(ph)SPVEK ddPTM_HeLa_CUDC101_4h_R1 1 GSSPSIRPIQGSQGSSSPVEK 21 1 Q92560;F8W6N3;H0Y8E8 Q92560 BAP1 Ubiquitin carboxyl-terminal hydrolase BAP1;Ubiquitin carboxyl-terminal hydrolase 1 0 GSSPSIRPIQGS(0.002)QGS(0.055)S(0.555)S(0.388)PVEK 69.084 0.0028699 20494000 2184.1 1479.7 1675.1 1730.4 1683.6 1582.3 1467.4 1103 1632.7 1616.8 TRUE FALSE FALSE 1928.083109 1525.287803 1765.660973 1800.973191 1559.404182 1552.120264 1523.99811 1228.561062 1565.399415 1607.183202 1.199666041 0.949044142 1.098605916 1.120577411 0.970271579 0.965739476 0.948241686 0.764418804 0.974001852 1 10.65031867 -3.485531223 0.595139388 1.087134195 0.156675128 0.516213269 0.078577526 4.313450133 0.538606473 0.015828171 3.410309436 0.000326941 3.485531223 -0.930459067 QNS(ph)IENDIEEK ddPTM_HeLa_CUDC101_4h_R1 2 QNSIENDIEEK 11 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 QNS(1)IENDIEEK;QNS(1)IENDIEEK ; 154.72 0.00028143 5588800 2703.2 2002.93 2022.82 2332.08 2570.6 2650.4 2604 2953.7 1889.5 2278.1 TRUE FALSE FALSE 2386.334994 2064.637899 2132.179768 2427.192303 2380.971959 2599.848036 2704.437152 3289.937269 1811.61401 2264.54976 1.053779005 0.911721145 0.941546883 1.071821139 1.051410749 1.148063991 1.194249382 1.452799725 0.799988608 1 11.14500853 -3.484809572 0.737565274 1.011727492 2.492127632 0.76567689 0.082075273 1.777647502 0.302168403 0.008543123 2.861659687 0.000327484 3.484809572 1.480400139 EDS(ph)FESLDSLGSR ddPTM_HeLa_CUDC101_4h_R1 2 EDSFESLDSLGSR 13 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;E9PMP7 E9PMS6 LMO7 LIM domain only protein 7 1 0 EDS(0.567)FES(0.433)LDSLGSR;EDS(0.999)FES(0.001)LDSLGSR ; 325.57 2.20E-166 43358000 3551.4 2979.9 2647.6 2784.4 3217 3603 3173 3726.5 3393.7 3363.2 TRUE FALSE FALSE 3135.110276 3071.707187 2790.737265 2897.959867 2979.688319 3534.278778 3295.383673 4150.709697 3253.81025 3343.195537 0.937758573 0.918793757 0.834751433 0.866823324 0.891269531 1.057155868 0.985698753 1.241539614 0.973263518 1 11.70701202 -3.484508437 1.164704433 0.946006594 2.414290927 0.696987211 0.060621203 4.111130973 1.209365381 0.01030938 11.40796552 0.000327711 3.484508437 1.468284333 ASGQAFELILS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 5 ASGQAFELILSPR 13 0 P16949;P16949-2;A2A2D0 P16949 STMN1 Stathmin 1 0 ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR ;;;; 167.92 3.39E-06 1757343000 7789.27 7205.38 7016.18 6548.48 7521.09 6772.45 5981.87 3863.02 7890.2 8700.5 TRUE FALSE FALSE 6876.223578 7427.369217 7395.495914 6815.555319 6966.274175 6643.2768 6212.59273 4302.770582 7564.962616 8648.749039 0.795054123 0.858779597 0.855094289 0.788039437 0.805466102 0.768119964 0.718322696 0.497502074 0.874688649 1 13.07827576 -2.415329585 0.124708362 1.053618105 6.47E-24 0.700775208 0.067286588 25.28573145 0.305246659 0.316019037 4.503079426 0.003843 2.415329585 -1.053618105 down TASPPGPPPYGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 TASPPGPPPYGKR 13 1 P54259 P54259 ATN1 Atrophin-1 0 1 TASPPGPPPYGK(1)R 88.134 0.027837 2278900 385.14 543.43 577.22 964.03 591.76 648.06 682.27 568.48 491.63 279.61 FALSE TRUE FALSE 339.994473 560.1724342 608.4262592 1003.34731 548.1070438 635.6993352 708.5853824 633.1934653 471.3648033 277.9468673 1.223235492 2.015393948 2.189002039 3.609852919 1.971984966 2.287125383 2.549355527 2.278109739 1.695880971 1 8.118665311 -7.112681373 1.894375021 1.085662457 2.509067425 0.563106692 0.454038663 0.12784017 0.884437244 0.071999786 0.090345089 7.71E-08 7.112681373 1.423404968 RS(ph)SFSMEEGDVL ddPTM_HeLa_CUDC101_4h_R1 1 RSSFSMEEGDVL 12 1 B1AKB5;B0QYS6;B0QYS7;P19484-2;P19484 B1AKB5 TFEB Transcription factor EB 1 0 RS(0.48)S(0.48)FS(0.04)MEEGDVL 97.551 0.027943 14522000 3329.6 3341.7 2704.2 3043.3 2957.1 2402.1 2473.2 1605.7 3266.6 3466.7 TRUE FALSE FALSE 2939.309335 3444.653816 2850.397232 3167.418928 2738.960624 2356.283945 2568.592152 1788.486398 3131.949365 3446.079914 0.852942882 0.999586168 0.827141942 0.919136818 0.794804732 0.683757778 0.745366392 0.518991562 0.90884409 1 11.75074044 -3.479897556 0.353003093 0.952303778 5.99E-16 0.804427403 0.06232641 3.467347275 0.19913958 0.02074111 1.573634632 0.000331209 3.479897556 -0.952303778 YLLGDAPVS(ph)PSSQK ddPTM_HeLa_CUDC101_4h_R1 3 YLLGDAPVSPSSQK 14 0 Q9NYB0;A0A590UJT3;H3BMI8 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 0 YLLGDAPVS(0.988)PS(0.009)S(0.003)QK;YLLGDAPVS(0.804)PS(0.181)S(0.015)QK;Y(0.001)LLGDAPVS(0.986)PS(0.01)S(0.003)QK ;; 226.93 4.75E-33 502580000 19054.2 16045.5 15697.3 14710.5 18112.7 15218.8 12931.8 10032.3 17330.8 17252.5 TRUE FALSE FALSE 16820.69556 16539.84284 16545.94352 15310.45777 16776.56221 14928.52675 13430.58386 11174.33648 16616.41709 17149.88136 0.98080536 0.964428994 0.964784722 0.892744238 0.978231969 0.870474053 0.783129841 0.651569317 0.968893996 1 14.06591098 -3.476172315 0.556614819 0.9890676 2.33E-19 0.933892739 0.027178953 1.19403064 0.13390039 0.004833908 0.93274007 0.000334062 3.476172315 -0.9890676 SQWESPSPT(ph)PSYR ddPTM_HeLa_CUDC101_4h_R1 1 SQWESPSPTPSYR 13 0 Q92620 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 1 0 SQWES(0.105)PS(0.243)PT(0.651)PS(0.002)YR 143.76 2.81E-05 0 1232.2 866.75 770.21 836.22 941.16 781.08 761.66 505.81 1036 894.91 TRUE FALSE FALSE 1087.763384 893.4535401 811.8498824 870.3246661 871.7325019 766.1822004 791.0374813 563.3893658 993.2956415 889.5870355 1.222773422 1.004346404 0.912614337 0.978346841 0.979929413 0.861278514 0.889218761 0.633315621 1.116580618 1 9.796991953 -3.474673268 0.417964313 1.096051626 3.81E-14 0.715455958 0.07940563 4.546187636 0.332594804 0.026151187 2.860225936 0.000335218 3.474673268 -1.096051626 TAQALS(ph)SGSGSQETK ddPTM_HeLa_CUDC101_4h_R1 1 TAQALSSGSGSQETK 15 0 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 0 TAQALS(0.851)S(0.111)GS(0.034)GS(0.003)QETK 166.67 1.37E-05 5665400 697.48 741.47 487.98 581.43 872.91 680.09 700.31 729.59 870.08 755.87 TRUE FALSE FALSE 615.7224517 764.3138118 514.3616749 605.1432286 808.5171684 667.1184164 727.3211913 812.6435765 834.2149341 751.3740516 0.819461958 1.017221463 0.684561403 0.805382123 1.076051491 0.887864593 0.967988167 1.081543307 1.11025252 1 9.553387484 -3.472528741 0.919734887 0.903113473 1.62896656 0.105893348 0.126240791 10.20893341 2.276284282 0.017880512 10.52370201 0.000336877 3.472528741 0.725853087 NDQDTWDYTNPNLSGQGDPGS(ph)NPNKR ddPTM_HeLa_CUDC101_4h_R1 1 NDQDTWDYTNPNLSGQGDPGSNPNKR 26 1 P14866;M0QXS5;A0A3B3ITJ4;P14866-2 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 1 0 NDQDTWDYTNPNLS(0.012)GQGDPGS(0.988)NPNKR 58.943 0.0026967 9051600 1932 1682.7 1714 1848 1638.6 1777.6 1504.8 1124.6 1885.8 1874 TRUE FALSE FALSE 1705.533889 1734.541993 1806.664025 1923.369428 1517.723743 1743.695242 1562.84064 1252.619918 1808.066526 1862.853365 0.91554919 0.931121056 0.96983695 1.032485683 0.814730655 0.93603462 0.838949898 0.672420032 0.970589827 1 10.8632984 -3.470183484 0.739169526 0.959289955 4.92E-11 0.729007326 0.052586341 2.986523546 0.500545554 0.008932729 3.139561093 0.000338701 3.470183484 -0.959289955 KAVVLPGGTATS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 KAVVLPGGTATSPK 14 1 Q8N1G0;F8WCX2;Q8N1G0-2;H0Y5I5 Q8N1G0 ZNF687 Zinc finger protein 687 1 0 KAVVLPGGTAT(0.085)S(0.915)PK;KAVVLPGGT(0.001)AT(0.161)S(0.838)PK ; 168.16 7.40E-07 98661000 13144.5 11592.7 13487.2 11336.1 12999.2 11994.3 10370.1 7961.4 13353.9 13456.3 TRUE FALSE FALSE 11603.72164 11949.85735 14216.35883 11798.43516 12040.27491 11765.52871 10770.07823 8867.693595 12803.44659 13376.26133 0.867486164 0.89336303 1.062805105 0.882042812 0.900122584 0.879582749 0.805163563 0.66294261 0.957176768 1 13.70738732 -3.466033484 0.712169288 0.940004981 3.89E-19 0.720358362 0.054446449 3.549355124 0.562464846 0.010693995 3.505790049 0.000341953 3.466033484 -0.940004981 TATAVAHCK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 TATAVAHCKR 10 1 M0R1M5;M0R3H0;M0R210;Q6IPX4;P62249 M0R1M5 RPS16 40S ribosomal protein S16 0 1 TATAVAHCK(1)R 82.831 0.030398 509070 657.15 470.1 205.04 613.94 437.04 401.87 351.95 180.07 255.19 57.976 FALSE TRUE FALSE 580.1198732 484.5832238 216.1250826 638.9791269 404.8004299 394.2049993 365.5248294 200.5684409 244.6709602 57.63115617 10.06608077 8.408355063 3.750143099 11.08739039 7.023985927 6.840136924 6.342486489 3.480208523 4.24546333 1 5.848777058 AHS(ph)PAEGASVESSS(ph)PGPK ddPTM_HeLa_CUDC101_4h_R1 1 AHSPAEGASVESSSPGPK 18 0 C9J4C4;Q8NFG4-3;Q8NFG4-2;Q8NFG4 C9J4C4 FLCN Folliculin 2 0 AHS(1)PAEGASVES(0.013)S(0.262)S(0.725)PGPK 126.9 0.00023527 16990000 6099.7 4737.5 5368.5 4817.1 5676.3 5103 4704.6 3451 5826.8 5431.7 TRUE FALSE FALSE 5384.702413 4883.45676 5658.737349 5013.562159 5257.570658 5005.668777 4886.057998 3843.847891 5586.616838 5399.392007 0.997279398 0.904445677 1.048032323 0.928541983 0.97373383 0.927080081 0.904927442 0.711903838 1.034675169 1 12.39858125 -3.463264464 0.811119813 0.990940792 8.41E-13 0.792485495 0.04159629 2.097826466 0.394559156 0.005731674 2.548505182 0.00034414 3.463264464 -0.990940792 FSSSIENSDS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 1 FSSSIENSDSPVR 13 0 O95425-3;O95425;A0A6I8PIX7;O95425-2;O95425-4 O95425-3 SVIL Supervillin 1 0 FSSSIENSDS(1)PVR 152.11 0.00025448 63540000 5882.1 5049.3 4869.2 4548.9 5304.5 5139.6 4027.1 3092 5468.3 5436.1 TRUE FALSE FALSE 5192.609155 5204.862948 5132.443681 4734.423804 4913.197603 5041.570693 4182.426596 3443.980782 5242.894359 5403.765835 0.960924162 0.963191801 0.949790172 0.876134153 0.909217341 0.932973568 0.773983685 0.63732976 0.970229747 1 12.39974944 -3.462586885 0.564251925 0.977816988 6.42E-13 0.903418631 0.032840159 1.705864241 0.192920009 0.006574695 1.342772934 0.000344678 3.462586885 -0.977816988 QLLLQQQQQQQVSGLKS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 QLLLQQQQQQQVSGLKSPK 19 1 A0A3B3IRY1;A0A087WVT2;A0A3B3IU08;A0A3B3IU15;G5E965;C9J0F0;A0A3B3IST6;A0A3B3IUB6;A0A3B3IRS5;A0A3B3IST0;Q9H334-6;Q9H334-3;Q9H334-7;Q9H334;Q9H334-4;Q9H334-8 A0A3B3IRY1 FOXP1 Forkhead box protein P1 1 0 QLLLQQQQQQQVS(0.003)GLKS(0.997)PK;QLLLQQQQQQQVS(0.142)GLKS(0.858)PK ; 118.08 3.79E-05 66872000 4672.6 3619.7 4097.2 3645.2 4565.4 3330.6 2948.8 2697.9 4510.4 5038 TRUE FALSE FALSE 4124.884911 3731.218667 4318.707025 3793.867012 4228.619538 3267.074354 3062.536204 3005.018031 4324.479403 5008.033752 0.823653577 0.745046629 0.862355815 0.757556199 0.84436722 0.65236668 0.611524673 0.600039492 0.863508438 1 12.29002857 -3.460845269 0.104677075 1.161017278 2.98E-13 0.701382691 0.066217129 18.27668323 0.245609176 0.526321809 3.150758845 0.000346063 3.460845269 -1.161017278 TATEEWGTEDWNEDLSETK ddPTM_HeLa_CUDC101_4h_R1 1 TATEEWGTEDWNEDLSETK 19 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;Q5VU79;Q5VU78;Q5VU77 F8W726 UBAP2L Ubiquitin-associated protein 2-like 0 0 201.75 2.77E-17 4476600 2672.1 2236.1 1780.9 2080.5 2224.5 2214.9 1858.2 2194.2 2366 2490.5 FALSE FALSE TRUE 2358.880489 2304.991591 1877.180841 2165.351783 2060.403067 2172.654473 1929.871396 2443.978859 2268.472479 2475.686395 0.952818779 0.931051524 0.75824662 0.874647042 0.832255277 0.877596806 0.779529831 0.987192426 0.916300418 1 11.27361286 -6.972112642 8.993905024 0.975878199 0.849127184 0.369105244 0.06211056 0.154160169 45.61236646 0.008896274 0.01166132 1.07E-07 6.972112642 -0.126751015 TATEK(ac)PLGELWK ddPTM_HeLa_CUDC101_4h_R1 1 TATEKPLGELWK 12 1 P23919-2;P23919;H7C312 P23919-2 DTYMK Thymidylate kinase 0 1 TATEK(1)PLGELWK 82.494 0.034858 288440 186.95 65.055 0 118.08 150.24 186.26 0 136.59 181.85 123.28 FALSE TRUE FALSE 165.0360044 67.05926744 0 122.8958128 139.1570945 182.7074008 0 152.1388535 174.354066 122.5467251 1.346719011 0.547213868 0 1.002848609 1.135543152 1.490920306 0 1.241476289 1.422755818 1 6.93718812 -7.264456798 24.98046668 1.163728421 0.764743029 0.167824102 0.478870088 404.2335557 3346543.045 0.080098368 0.093710428 5.44E-08 7.264456798 -0.398985393 TATESFASDPILYRPVAVALDTK ddPTM_HeLa_CUDC101_4h_R1 2 TATESFASDPILYRPVAVALDTK 23 1 P14618;P14618-3;P14618-2;H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 0 ; ; 156.15 1.53E-07 126405000 7563.4 6831.6 7258.9 6489.3 6840.3 6315.9 6330.5 6467.3 6631.3 8573.6 FALSE FALSE TRUE 6676.829717 7042.073499 7651.338091 6753.961703 6335.704697 6195.434731 6574.669506 7203.51129 6357.955007 8522.603846 0.783426032 0.826281923 0.897770004 0.792476317 0.743400117 0.726941536 0.771439061 0.845224232 0.746010858 1 13.05707856 -10.31124365 0.350573131 1.191767856 0.779691001 0 0.093436454 2.448268591 0.221268266 0.425448849 0.018957081 4.88E-11 10.31124365 -0.412076855 ASKPLPPAPAPDEYLVS(ph)PITGEK ddPTM_HeLa_CUDC101_4h_R1 1 ASKPLPPAPAPDEYLVSPITGEK 23 1 Q15459;Q15459-2;H7C1L2 Q15459 SF3A1 Splicing factor 3A subunit 1 1 0 ASKPLPPAPAPDEY(0.001)LVS(0.98)PIT(0.019)GEK 130.77 7.23E-08 19481000 5116.1 4608.8 3892.9 4182.5 4586.5 3772.4 3828.1 2037.3 4639.9 5568.4 TRUE FALSE FALSE 4516.398514 4750.791665 4103.361949 4353.080428 4248.163033 3700.447755 3975.751099 2269.217997 4448.641358 5535.278909 0.81592971 0.858275029 0.741310784 0.786424767 0.767470457 0.66852056 0.718256689 0.409955494 0.803688745 1 12.4344403 -3.460199652 0.160010853 1.040756083 5.42E-19 0.642089084 0.085855408 9.15650246 0.193281731 0.153296081 2.016267638 0.000346577 3.460199652 -1.040756083 YYDDIYFDS(ph)DSEDEDR ddPTM_HeLa_CUDC101_4h_R1 1 YYDDIYFDSDSEDEDR 16 0 G3V2W9;A0A087X060;Q56P03 G3V2W9 EAPP E2F-associated phosphoprotein 1 0 YYDDIYFDS(0.958)DS(0.042)EDEDR 133.25 0.00043897 3000800 794.34 661.16 750.44 693.19 598.96 677.55 464.69 405.44 785.82 854.4 TRUE FALSE FALSE 701.2286693 681.5295559 791.0110564 721.4612844 554.7759141 664.6268626 482.613249 451.5936508 753.428167 849.3179908 0.825637367 0.802443329 0.931348523 0.849459557 0.653201651 0.782541839 0.568236225 0.531713275 0.887097854 1 9.730161 -3.45951963 0.231795626 0.977023384 1.32E-23 0.762237054 0.07110769 5.802790203 0.188543255 0.057929996 1.728994594 0.000347121 3.45951963 -0.977023384 SAQGSSSPVPS(ph)MVQK ddPTM_HeLa_CUDC101_4h_R1 1 SAQGSSSPVPSMVQK 15 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 SAQGS(0.009)S(0.042)S(0.193)PVPS(0.757)MVQK 87.568 0.026764 30386000 5855.1 4536.9 4605.4 4690.6 4756.6 4180.3 4029.9 2778.7 4882.6 4853 TRUE FALSE FALSE 5168.774054 4676.676511 4854.381855 4881.902943 4405.715094 4100.567742 4185.334593 3095.015976 4681.337161 4824.13414 1.071440782 0.969433348 1.006270082 1.011974958 0.913265462 0.850011136 0.867582549 0.64156922 0.970399459 1 12.23605431 -3.459361394 0.506656364 1.032210701 4.81E-12 0.865228729 0.042559002 1.901230765 0.182946125 0.008442173 1.40018221 0.000347247 3.459361394 -1.032210701 KGAGDGS(ph)DEEVDGK ddPTM_HeLa_CUDC101_4h_R1 14 KGAGDGSDEEVDGK 14 1 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK;KGAGDGS(1)DEEVDGK ;;;;;;;;;;;;; 128.82 0.00079693 13619256000 104167.1 60188.6 88892.4 86718.9 66996.3 70532.5 71433.2 41988.41 88805.9 98301.2 TRUE FALSE FALSE 91956.79045 62042.93942 93698.19203 90255.67157 62054.11642 69187.21008 74188.40245 46768.20087 85145.28321 97716.50009 0.941056939 0.634927974 0.958877896 0.923648222 0.635042356 0.708040198 0.759220832 0.478611093 0.871350111 1 16.57631457 -3.458728674 0.214536459 1.028914782 1.02E-17 0.477669779 0.119324592 9.077774659 0.268335284 0.105163837 2.630844176 0.000347753 3.458728674 -1.028914782 TATPQQAQEVHEK ddPTM_HeLa_CUDC101_4h_R1 1 TATPQQAQEVHEK 13 0 P60174;P60174-3;P60174-4;U3KPZ0 P60174 TPI1 Triosephosphate isomerase 0 0 131.86 0.0009574 5847500 2457.7 1839.2 1879.2 1873.3 2319.7 2042.1 2006.2 2238.7 1851.6 1956.2 FALSE FALSE TRUE 2169.612132 1895.863572 1980.795236 1949.701271 2148.580352 2003.150345 2083.579806 2493.544559 1775.276264 1944.564435 1.115731673 0.974955387 1.018631834 1.002641638 1.104915997 1.030128037 1.071489208 1.282315213 0.912942884 1 10.92523133 -4.262263326 3.736818763 1.046073799 1.307019436 0.608538573 0.060105793 0.125573986 3.296126449 0.007227658 0.09014412 5.47E-05 4.262263326 0.260945637 GIASTSDPPTANIKPTPVVS(ph)TPSK ddPTM_HeLa_CUDC101_4h_R1 1 GIASTSDPPTANIKPTPVVSTPSK 24 1 P12270 P12270 TPR Nucleoprotein TPR 1 0 GIASTSDPPTANIKPT(0.001)PVVS(0.489)T(0.489)PS(0.02)K 109.23 4.84E-07 93009000 8214.9 6076.6 6153.3 5663.3 6890.7 6463 5472 3448.2 5873.6 7019.1 TRUE FALSE FALSE 7251.961875 6263.812843 6485.966011 5894.273853 6382.386789 6339.729043 5683.056873 3840.72915 5631.487722 6977.350081 1.039357606 0.89773521 0.929574399 0.844772555 0.914729333 0.908615588 0.81450075 0.550456707 0.807109813 1 12.76846351 -3.457166277 0.434938411 1.010770284 9.17E-23 0.520738678 0.088430614 3.052958331 0.234142872 0.015198348 1.857537738 0.000349007 3.457166277 -1.010770284 S(ph)SGSETEQVVDFSDR ddPTM_HeLa_CUDC101_4h_R1 2 SSGSETEQVVDFSDR 15 0 O95251-4;O95251;O95251-2 O95251-4 KAT7 Histone acetyltransferase KAT7 1 0 S(0.897)S(0.083)GS(0.019)ET(0.001)EQVVDFSDR;S(0.464)S(0.464)GS(0.072)ETEQVVDFSDR ; 278.89 2.21E-86 44537000 2534.8 2353.3 2280.87 1996.25 2566.54 2694.64 2430.69 2833.56 2736.06 2663.2 TRUE FALSE FALSE 2237.674587 2425.802384 2404.180731 2077.665704 2377.211457 2643.244232 2524.442528 3156.121017 2623.278449 2647.359168 0.845247828 0.916310266 0.908143013 0.784806886 0.897955777 0.998445645 0.953570093 1.192177116 0.990903871 1 11.37033822 -3.456530922 1.169100473 0.912915158 2.397948288 0.624232099 0.064006184 4.9776715 1.388335279 0.011051599 14.2414988 0.000349518 3.456530922 1.48503313 QSELSAEES(ph)PEKLGTSQLHR ddPTM_HeLa_CUDC101_4h_R1 2 QSELSAEESPEKLGTSQLHR 20 1 F8W9X7;Q567U6 F8W9X7 CCDC93 Coiled-coil domain-containing protein 93 1 0 QSELS(0.006)AEES(0.833)PEKLGT(0.081)S(0.081)QLHR;QSELS(0.001)AEES(0.98)PEKLGT(0.013)S(0.005)QLHR ; 84.125 0.0016209 26542000 1833.44 1056.26 1173.62 1069.64 1984.18 1510.75 1347.21 1477.37 1558.05 1525.17 TRUE FALSE FALSE 1618.526943 1088.802119 1237.069447 1113.264543 1837.810994 1481.934961 1399.172341 1645.547829 1493.82652 1516.098221 1.067560742 0.718160673 0.815956005 0.734295791 1.212197844 0.977466328 0.922877108 1.085383392 0.985309856 1 10.56614751 -3.455770466 3.82366147 0.980649545 13.78614058 0.011550023 0.148913147 1923.335379 203.0732815 0.021835413 211840.3595 0.00035013 3.455770466 12.80549103 ERPSS(ph)REDTPSR ddPTM_HeLa_CUDC101_4h_R1 1 ERPSSREDTPSR 12 2 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IS03;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 ERPS(0.06)S(0.94)REDTPSR 81.185 0.027527 118740000 1702.1 1662.8 1506.4 1798.9 1504.8 1295.9 1346.3 867.46 1630.7 1876.5 TRUE FALSE FALSE 1502.582418 1714.028897 1587.840541 1872.266918 1393.793902 1271.182867 1398.227242 966.20814 1563.481856 1865.338495 0.805528017 0.918883571 0.851234532 1.003714298 0.747206958 0.681475706 0.749583653 0.517980057 0.838175945 1 10.86522174 -3.454179274 0.388277571 0.925184801 1.28E-27 0.662945578 0.081561121 4.798659423 0.311378212 0.02438513 2.358543666 0.000351415 3.454179274 -0.925184801 EEHGGLIRS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 5 EEHGGLIRSPR 11 1 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 1 0 EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR;EEHGGLIRS(1)PR ;;;; 77.644 0.024924 3012738900 16866.6 14118.8 14989.6 14400.6 14244 12815.2 11455.5 9174.2 16035.1 18586.8 TRUE FALSE FALSE 14889.52272 14553.78349 15799.98312 14987.91871 13193.2485 12570.77141 11897.34247 10218.55384 15374.12639 18476.24489 0.805873856 0.787702457 0.855151207 0.811199397 0.71406547 0.6803748 0.643926433 0.55306443 0.832102328 1 14.17338395 -3.452339288 0.112486957 1.132250098 5.36E-15 0.748686451 0.059610742 12.72063925 0.183763653 0.333236802 2.256994359 0.000352907 3.452339288 -1.132250098 LS(ph)VEGPR ddPTM_HeLa_CUDC101_4h_R1 1 LSVEGPR 7 0 H0Y687;Q5TGP6;Q5TGP6-2 H0Y687 MROH9 Maestro heat-like repeat-containing protein family member 9 1 0 LS(1)VEGPR 85.161 0.038946 8118100 5046.3 4190.2 3715.7 4035.4 3987.3 3652.5 2987.8 2486.8 4235.7 4685.4 TRUE FALSE FALSE 4454.780364 4319.295095 3916.581981 4199.981054 3693.164823 3582.834648 3103.040447 2769.88726 4061.102653 4657.531032 0.956468209 0.927378705 0.84091377 0.90176126 0.792944759 0.769256205 0.666241497 0.594711499 0.87194323 1 12.18534967 -3.450219171 0.299660857 1.002475477 5.74E-21 0.856518505 0.046174819 1.331617809 0.060029783 0.009800889 0.534892031 0.000354634 3.450219171 -1.002475477 EIPSATQS(ph)PISK ddPTM_HeLa_CUDC101_4h_R1 2 EIPSATQSPISK 12 0 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 EIPS(0.006)AT(0.084)QS(0.839)PIS(0.07)K;EIPS(0.001)AT(0.004)QS(0.974)PIS(0.021)K ; 89.747 0.018923 153567700 9041.5 7654.7 6985.9 7225.6 7149 7707.8 5442.5 4433.6 7539.9 8339.4 TRUE FALSE FALSE 7981.669076 7890.532234 7363.578885 7520.2912 6621.632513 7560.786557 5652.419048 4938.303103 7229.102131 8289.796878 0.962830476 0.951836619 0.888270122 0.907174363 0.79876897 0.912059326 0.681852539 0.595708577 0.872048162 1 13.01712104 -3.449116647 0.390171446 0.988732571 8.46E-14 0.770434372 0.058629744 2.166068602 0.141116735 0.011624745 1.144900321 0.000355536 3.449116647 -0.988732571 TCDISFSDPDDLLNFK ddPTM_HeLa_CUDC101_4h_R1 1 TCDISFSDPDDLLNFK 16 0 P61081 P61081 UBE2M NEDD8-conjugating enzyme Ubc12 0 0 132.32 0.0025107 6795400 1419.9 1206.8 1167.2 1009 1337.6 1203.5 1191.2 1017.8 1290.6 545.6 FALSE FALSE TRUE 1253.461474 1243.980078 1230.302363 1050.151381 1238.927913 1180.545243 1237.144983 1133.662238 1237.400922 542.3547469 2.311146867 2.293664958 2.268445827 1.936281349 2.284349717 2.17670307 2.281062331 2.09025964 2.281534233 1 9.083092997 -9.220439778 0.787202313 0.935422455 2.214012321 0 0.40853209 0.135344464 0.139290637 0.109103169 0.025152886 6.02E-10 9.220439778 1.278589865 LDDQES(ph)PVYAAQQR ddPTM_HeLa_CUDC101_4h_R1 2 LDDQESPVYAAQQR 14 0 Q96ST3;H3BMA2;H3BT34;H3BQ76;H3BQ88;H3BNA0;H3BNZ3;H3BQL7;H3BP90 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 0 LDDQES(1)PVYAAQQR;LDDQES(1)PVYAAQQR ; 203.52 4.88E-17 13096400 4089.3 3308.7 2750.3 2544.4 3202.6 3015.7 2749.9 1533.81 3030.2 3388 TRUE FALSE FALSE 3609.958453 3410.637125 2898.989537 2648.17163 2966.350578 2958.180547 2855.964564 1708.412731 2905.293873 3367.848025 1.071888763 1.012705175 0.860783953 0.786309718 0.880785165 0.878359274 0.848008741 0.507271325 0.862655872 1 11.71761132 -3.446084211 0.35141216 1.037812688 5.62E-15 0.545730339 0.099377399 4.561393809 0.255573858 0.028679756 2.256844806 0.000358027 3.446084211 -1.037812688 T(ph)TPTQPSEQK ddPTM_HeLa_CUDC101_4h_R1 2 TTPTQPSEQK 10 0 O95104-2;O95104-3;O95104 O95104-2 SCAF4 "Splicing factor, arginine/serine-rich 15" 1 0 T(0.999)T(0.001)PTQPSEQK;T(0.999)T(0.001)PTQPSEQK ; 202.31 1.71E-16 124057000 14797.3 11946.9 13532.6 12388.3 12064 12227.7 11943.9 8127.1 12370.4 12786.9 TRUE FALSE FALSE 13062.78293 12314.96983 14264.21329 12893.54842 11174.06275 11994.477 12404.58022 9052.256213 11860.48688 12710.84295 1.02768817 0.968855478 1.122208287 1.014373985 0.87909691 0.94364135 0.975905396 0.712168048 0.933099946 1 13.63377209 -3.445812729 0.814244182 1.012809247 2.07E-25 0.594074893 0.065187824 3.549662605 0.655676088 0.00937401 4.457628264 0.000358251 3.445812729 -1.012809247 GSLS(ph)PGGER ddPTM_HeLa_CUDC101_4h_R1 1 GSLSPGGER 9 0 E7EWN3;Q9C0A6;H7C1F2;H0Y3R4;Q9C0A6-2;Q9C0A6-3 E7EWN3 SETD5 SET domain-containing protein 5 1 0 GS(0.011)LS(0.989)PGGER 84.687 0.036164 16722000 1283 1027.1 895.97 959.65 1032 970.35 852.75 635.09 1014.9 939.73 TRUE FALSE FALSE 1132.608685 1058.743734 944.4088484 998.788675 955.871416 951.8421905 885.6408532 707.3860785 973.0653924 934.1404442 1.212460816 1.133388175 1.010992356 1.069206115 1.023263067 1.01894977 0.94808105 0.757258807 1.041669268 1 9.867495659 -3.444385801 0.667591106 1.09773617 2.82E-21 0.717921218 0.059962322 4.028876013 0.570039381 0.014355583 4.341395817 0.00035943 3.444385801 -1.09773617 TCEESSFCK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 TCEESSFCKR 10 1 Q14697;Q14697-2 Q14697 GANAB Neutral alpha-glucosidase AB 0 1 ; TCEESSFCK(1)R;TCEESSFCK(1)R 161.27 0.00065646 1873670 62.75 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 55.39454012 0 0 0 0 0 0 0 0 0 0 EDPQARPLEGSSSEDSPPEGQAPPSHS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 EDPQARPLEGSSSEDSPPEGQAPPSHSPR 29 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 0 EDPQARPLEGSSSEDSPPEGQAPPS(0.432)HS(0.568)PR;EDPQARPLEGSSSEDSPPEGQAPPS(0.298)HS(0.702)PR ; 101.21 2.24E-09 37420000 4173.7 2914.2 3040.3 3522.3 3879.9 3265.1 3283.5 2521.4 3265.2 3386.15 TRUE FALSE FALSE 3684.465213 3003.983048 3204.667814 3665.954619 3593.687507 3202.823658 3410.145695 2808.425984 3130.607074 3366.009029 1.094609426 0.892446521 0.952067504 1.089110156 1.067640483 0.951519627 1.013112462 0.834348916 0.930064966 1 11.71682333 -3.443900173 1.155017276 1.029664551 1.92E-11 0.246090455 0.071135502 6.936150341 1.865802434 0.01035616 13.63697095 0.000359832 3.443900173 -1.02966455 S(ph)NSELEDEILCLEK ddPTM_HeLa_CUDC101_4h_R1 2 SNSELEDEILCLEK 14 0 Q96PC5;G3V599;Q96PC5-14;Q96PC5-6;Q96PC5-11;Q96PC5-13;Q96PC5-5;Q96PC5-8;Q96PC5-10;Q96PC5-9;Q96PC5-12;Q96PC5-7;A0A5F9ZHA4;A0A2R8YE69;G3V5K6;P0CG41;A4FU28;A4D2H0;Q86UF2;Q8IX94 Q96PC5 MIA2;CTAGE5;CTAGE8;CTAGE9;CTAGE15;CTAGE6;CTAGE4 Melanoma inhibitory activity protein 2;cTAGE family member 8;cTAGE family member 9;cTAGE family member 15;cTAGE family member 6;cTAGE family member 4 1 0 S(0.994)NS(0.006)ELEDEILCLEK;S(0.949)NS(0.051)ELEDEILCLEK ; 167.14 5.68E-07 2633900 3158 2196.69 1956.56 2217.58 2250.05 2182.02 1893.74 1419.67 2568.1 2057.23 TRUE FALSE FALSE 2787.824027 2264.367415 2062.337552 2308.022498 2084.068294 2140.401604 1966.782186 1581.279494 2462.241831 2044.993504 1.363243463 1.107273647 1.008481224 1.128620943 1.019107537 1.046654476 0.961754735 0.773244263 1.20403406 1 10.99788055 -3.443479936 0.535705769 1.159654359 0.058926805 0.564583314 0.097787786 6.318839875 0.651661088 0.027681327 5.305621562 0.00036018 3.443479936 -1.100727553 QSQQPMKPIS(ph)PVKDPVSPASQK ddPTM_HeLa_CUDC101_4h_R1 2 QSQQPMKPISPVKDPVSPASQK 22 2 Q12888;Q12888-3;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 QSQQPMKPIS(0.999)PVKDPVS(0.001)PASQK;QSQQPMKPIS(0.995)PVKDPVS(0.004)PAS(0.001)QK ; 110.34 1.40E-05 47560000 7566.2 6156.1 6388.1 6680.3 6960.4 5980.2 6588.4 4425.4 7047.7 6954.7 TRUE FALSE FALSE 6679.301506 6345.762144 6733.460009 6952.751509 6446.945159 5866.137649 6842.516795 4929.169648 6757.190823 6913.333135 0.966147786 0.917901976 0.973981707 1.00570179 0.932537899 0.848525239 0.989756556 0.712994666 0.977414323 1 12.75516573 -3.443177259 0.931661209 0.974837804 1.06E-62 0.639974135 0.051444885 3.662083107 0.792400277 0.007648179 5.215961726 0.000360432 3.443177259 -0.974837804 FS(ph)SPTEELDYR ddPTM_HeLa_CUDC101_4h_R1 1 FSSPTEELDYR 11 0 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359;E9PGB3 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 FS(0.5)S(0.5)PTEELDYR 203.61 7.92E-17 23059000 2362.8 1934 2042.5 1762.9 2089 1919.6 1702.5 1370.7 2276.4 1936.5 TRUE FALSE FALSE 2085.836166 1993.584248 2152.923728 1834.798682 1934.898632 1882.986828 1768.165995 1526.734947 2182.565828 1924.981612 1.083561605 1.035638073 1.11841262 0.953151277 1.005151748 0.97818432 0.918536564 0.79311664 1.133811261 1 10.91062895 -3.440871891 0.660058303 1.042256182 0.21713742 0.734987476 0.049451184 2.86763112 0.397908922 0.007704921 2.294811851 0.00036235 3.440871891 -0.825118763 EAAGEGPALYEDPPDQKTS(ph)PSGKPATLK ddPTM_HeLa_CUDC101_4h_R1 1 EAAGEGPALYEDPPDQKTSPSGKPATLK 28 2 G3V5D9;A0A0C4DGK8;G3V3C7;G3V5Q1;G3V3M6;P27695;G3V5M0;G3V359 G3V5D9 APEX1 "DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial" 1 0 EAAGEGPALYEDPPDQKT(0.209)S(0.745)PS(0.042)GKPAT(0.004)LK 90.912 1.44E-07 10026000 3315.6 2692.4 2844.3 3017.2 2691.2 2707.2 2610.4 1948.7 3048.8 2643.3 TRUE FALSE FALSE 2926.950394 2775.349653 2998.071462 3140.254457 2492.675538 2655.564671 2711.084002 2170.532131 2923.127174 2627.577534 1.113934929 1.056238918 1.141002091 1.195113909 0.948659176 1.010651308 1.031780782 0.826058262 1.112479893 1 11.35951762 -3.439940266 1.004973357 1.065330257 2.04E-18 0.537254795 0.068621139 5.685157896 1.328985667 0.011325931 9.729521578 0.000363128 3.439940266 -1.065330257 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSSPR 40 2 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;C9JQE8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 VHEPPREDAAPTKPAPPAPPPPQNLQPES(0.023)DAPQQPGS(0.305)S(0.672)PR 51.004 0.0033673 113600000 1464.4 1296.7 1136.2 1085.3 1552.6 1478.9 1315.2 1435.9 1468.7 1374.6 TRUE FALSE FALSE 1292.745252 1336.64979 1197.626409 1129.563225 1438.067791 1450.692447 1365.927705 1599.357052 1408.159564 1366.423818 0.946079273 0.978210254 0.87646775 0.826656569 1.052431736 1.061670931 0.999636926 1.170469243 1.030543778 1 10.41618931 -3.437579079 0.805817701 0.961603995 1.71981165 0.452461078 0.068181138 5.60783581 1.011312151 0.010966218 5.223200733 0.000365108 3.437579079 0.758207655 EVSSRPST(ph)PGLSVVSGISATSEDIPNKIEDLR ddPTM_HeLa_CUDC101_4h_R1 3 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 EVSS(0.003)RPS(0.218)T(0.748)PGLS(0.021)VVS(0.002)GIS(0.007)AT(0.001)S(0.001)EDIPNKIEDLR;EVS(0.113)S(0.113)RPS(0.197)T(0.432)PGLS(0.139)VVS(0.002)GIS(0.002)AT(0.002)SEDIPNKIEDLR;EVSS(0.003)RPS(0.139)T(0.791)PGLS(0.065)VVS(0.002)GISATSEDIPNKIEDLR ;; 158.72 4.17E-24 25097000 4448.3 4476.95 3450.37 3602.78 4211.3 3768.39 3701.26 2423.59 4409.1 4248.9 TRUE FALSE FALSE 3926.877017 4614.879523 3636.907439 3749.716941 3900.640789 3696.514239 3844.018838 2699.481689 4227.355032 4223.627354 0.929740408 1.092634159 0.86108625 0.887795401 0.923528631 0.875198953 0.910122631 0.639138225 1.000882577 1 12.04426684 -3.434304613 0.703258319 0.964493141 4.63E-49 0.651002723 0.066761073 3.752934007 0.564120777 0.010859211 3.788392838 0.000367871 3.434304613 -0.964493141 LS(ph)AKPAPPKPEPK ddPTM_HeLa_CUDC101_4h_R1 2 LSAKPAPPKPEPK 13 2 Q15651;A0A087WZE9;Q15651-2;P05204 Q15651 HMGN3;HMGN2 High mobility group nucleosome-binding domain-containing protein 3;Non-histone chromosomal protein HMG-17 1 0 LS(1)AKPAPPKPEPK;LS(1)AKPAPPKPEPK ; 86.772 0.01846 92331000 8292.8 7327.8 6218.5 7576.3 6827.8 7122.6 6190.2 2827.1 6595.5 8945.1 TRUE FALSE FALSE 7320.730555 7553.560832 6554.69092 7885.294262 6324.126797 6986.748272 6428.958088 3148.925636 6323.630698 8891.894147 0.823303835 0.849488389 0.737153503 0.886795786 0.711223806 0.785743527 0.72301334 0.354134404 0.711168014 1 13.11827506 -3.430461424 0.237237474 0.96856659 1.03E-31 0.442921046 0.119817066 7.375918962 0.243807691 0.069105541 2.237143962 0.000371141 3.430461424 -0.96856659 Y(ph)LLGDAPVSPSSQK ddPTM_HeLa_CUDC101_4h_R1 1 YLLGDAPVSPSSQK 14 0 Q9NYB0;A0A590UJT3;H3BMI8 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 0 Y(1)LLGDAPVSPSSQK 150.15 0.0013623 121910000 7564.3 5661.5 5586.2 5354.9 6224.7 5690.5 4571.7 3560.7 6606.3 6203.8 TRUE FALSE FALSE 6677.624221 5835.924104 5888.206869 5573.295968 5765.516282 5581.963194 4748.032 3966.035695 6333.985518 6166.899522 1.082817094 0.946330337 0.954808303 0.903743599 0.934913284 0.905149042 0.769922063 0.643116639 1.027094003 1 12.59032963 -3.429596931 0.42879985 1.035196493 1.40E-17 0.887653952 0.040510481 2.424815972 0.178875089 0.01203582 1.495574651 0.00037188 3.429596931 -1.035196493 S(ph)ESSDFEVVPK ddPTM_HeLa_CUDC101_4h_R1 1 SESSDFEVVPK 11 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 S(0.989)ES(0.004)S(0.008)DFEVVPK 124.12 0.0033503 2215200 2419.2 2387.3 1964.3 2124 2415.1 2160.9 1676.3 1383 3033 2503.1 TRUE FALSE FALSE 2135.625043 2460.849883 2070.496 2210.625901 2236.942885 2119.684433 1740.955453 1540.43513 2907.978456 2488.21145 0.858297249 0.98900352 0.832122206 0.888439727 0.899016394 0.851890796 0.699681473 0.619093337 1.168702305 1 11.28089338 -3.428937385 0.503203552 0.936835086 4.72E-26 0.634984923 0.088423022 3.195417856 0.297334208 0.012292986 2.134995981 0.000372445 3.428937385 -0.936835086 STST(ph)PTSPGPR ddPTM_HeLa_CUDC101_4h_R1 2 STSTPTSPGPR 11 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BRB0;A0A0C4DGL7;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 1 0 S(0.021)T(0.003)S(0.021)T(0.923)PT(0.032)SPGPR;S(0.048)T(0.005)S(0.032)T(0.912)PT(0.003)SPGPR ; 115.29 0.026422 22265000 7085.2 6788.1 6701.1 6322.3 7199.6 5863.7 5846.2 4035.4 6963.7 7392.7 TRUE FALSE FALSE 6254.683596 6997.233315 7063.381736 6580.150721 6668.499852 5751.859692 6071.689892 4494.773624 6676.653339 7348.727892 0.851124669 0.95216933 0.961170673 0.895413576 0.907435947 0.782701411 0.826223257 0.611639687 0.908545457 1 12.84327882 -3.428656376 0.594482002 0.934355252 1.34E-17 0.803823168 0.046903262 3.316256267 0.392339002 0.010881352 2.672625286 0.000372686 3.428656376 -0.934355252 TDAEATDTEATET ddPTM_HeLa_CUDC101_4h_R1 2 TDAEATDTEATET 13 0 Q9Y3D3 Q9Y3D3 MRPS16 "28S ribosomal protein S16, mitochondrial" 0 0 ; ; 156.94 0.00046412 23532000 5760.5 5045.1 3731.8 4745.2 5367.5 5313.4 5060 4202 3813.6 5168.1 FALSE FALSE TRUE 5085.262922 5200.533551 3933.552396 4938.729767 4971.550219 5212.055748 5255.165895 4680.338695 3656.401794 5137.359911 0.98985919 1.012296908 0.765675846 0.961336144 0.967724727 1.014539732 1.02293123 0.911039673 0.711727786 1 12.32681143 SAYPPPAPAYALS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 2 SAYPPPAPAYALSSPR 16 0 O14497-2;O14497 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 0 SAYPPPAPAY(0.001)ALS(0.499)S(0.499)PR;SAYPPPAPAYALS(0.784)S(0.216)PR ; 153.92 0.00012383 30864000 3476 2992.05 2873.19 3136.5 2876.15 2807.33 2651.68 1602.58 3065.4 3427 TRUE FALSE FALSE 3068.548549 3084.231514 3028.523342 3264.420027 2663.982145 2753.784858 2753.956186 1785.011229 2939.042915 3406.616052 0.90076149 0.905365168 0.889012233 0.958258864 0.782002464 0.80836373 0.808414023 0.523983684 0.862745572 1 11.73412364 -3.427847963 0.429775179 0.956814587 4.67E-29 0.745299185 0.06294268 2.978885369 0.220219115 0.013600241 1.703104661 0.000373381 3.427847963 -0.956814587 LSLFSDGDS(ph)SESEDTLSSSER ddPTM_HeLa_CUDC101_4h_R1 1 LSLFSDGDSSESEDTLSSSER 21 0 M0QZ79;M0QXD7;M0R025;M0QYG0;M0QYA8;Q8IV63-2;Q8IV63 M0QZ79 VRK3 Inactive serine/threonine-protein kinase VRK3 1 0 LSLFSDGDS(0.536)S(0.355)ES(0.109)EDTLSSSER 174.87 1.43E-09 5046200 1183.1 1176.1 1123.7 1220.9 1191.5 1049.7 1113.8 877.6 1019.9 1174.8 TRUE FALSE FALSE 1044.418811 1212.334247 1184.450621 1270.693579 1103.605419 1029.678721 1156.759639 977.5024366 977.8592903 1167.812237 0.894337958 1.038124288 1.014247482 1.088097503 0.94501957 0.881715989 0.990535638 0.83703733 0.837342904 1 10.18959262 -3.427065534 1.44936428 0.967034839 8.21E-10 0.203447532 0.073746275 14.50002139 4.334674891 0.010117522 36.21427497 0.000374054 3.427065534 -0.967034838 AEHMETNAVGPS(ph)PSSDTR ddPTM_HeLa_CUDC101_4h_R1 4 AEHMETNAVGPSPSSDTR 18 0 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 AEHMETNAVGPS(0.448)PS(0.235)S(0.235)DT(0.081)R;AEHMETNAVGPS(0.449)PS(0.236)S(0.236)DT(0.079)R;AEHMETNAVGPS(0.999)PS(0.001)SDTR;AEHMETNAVGPS(0.999)PS(0.001)SDTR ;;; 321.67 1.59E-167 81641600 13233.9 11969.4 12043.6 11217.9 11258 11310.2 10074.7 8089.6 12096.1 12217.4 TRUE FALSE FALSE 11682.6423 12338.16303 12694.71345 11675.41445 10427.51977 11094.47678 10463.28455 9010.487365 11597.49364 12144.73036 0.961951559 1.015927292 1.045285739 0.961356416 0.858604469 0.913521869 0.86154935 0.741925683 0.954940397 1 13.56804284 -3.420750798 0.514062592 0.989815869 0.283213462 0.79137096 0.03918666 2.870815002 0.273773182 0.008048667 1.485085743 0.000379533 3.420750798 -0.706602407 ESLPPAAEPS(ph)PVSK ddPTM_HeLa_CUDC101_4h_R1 4 ESLPPAAEPSPVSK 14 0 Q9NWT1 Q9NWT1 PAK1IP1 p21-activated protein kinase-interacting protein 1 1 0 ESLPPAAEPS(0.976)PVS(0.024)K;ESLPPAAEPS(1)PVSK;ESLPPAAEPS(0.9)PVS(0.1)K;ESLPPAAEPS(0.998)PVS(0.002)K ;;; 160.63 1.10E-07 139179500 27399.7 22520.7 22118.5 22247.7 21804.7 20413.3 17341.7 13623.4 24409.1 25200.7 TRUE FALSE FALSE 24187.9487 23214.53607 23314.29301 23155.05737 20196.21072 20023.95031 18010.57518 15174.23279 23402.94657 25050.80512 0.965555741 0.926698203 0.930680388 0.924323879 0.806210045 0.799333603 0.718961929 0.605738327 0.934219338 1 14.61256935 -3.413414742 0.356349946 0.995695026 1.99E-13 0.949196989 0.026757862 0.992790183 0.05572138 0.005662762 0.481028555 0.000385998 3.413414742 -0.995695026 STIFISPS(ph)SVK ddPTM_HeLa_CUDC101_4h_R1 1 STIFISPSSVK 11 0 E9PHV5;P28290-3;P28290;P28290-2;E7EUL7 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 STIFIS(0.167)PS(0.417)S(0.417)VK 140.91 0.0013648 60104000 3173.8 2730.5 2506.4 2312 2743.3 2567.2 2005.4 1425.6 3190.6 3106.5 TRUE FALSE FALSE 2801.771975 2814.623469 2641.903565 2406.293353 2540.932224 2518.234937 2082.74895 1587.884542 3059.082118 3088.0224 0.907302996 0.911464719 0.855532513 0.779234423 0.822834778 0.815484673 0.674460441 0.514207585 0.990628215 1 11.5924675 -3.413374008 0.289954578 0.982713806 1.42E-16 0.905459118 0.042896779 2.896611854 0.122841103 0.020950254 1.105687299 0.000386034 3.413374008 -0.982713806 LLEDSDS(ph)EDEAAPSPLQPALRPNPT(ph)AILDEAPKPK ddPTM_HeLa_CUDC101_4h_R1 1 LLEDSDSEDEAAPSPLQPALRPNPTAILDEAPKPK 35 2 Q9BW85 Q9BW85 CCDC94 Coiled-coil domain-containing protein 94 2 0 LLEDS(0.073)DS(0.857)EDEAAPS(0.094)PLQPALRPNPT(0.976)AILDEAPKPK 54.466 0.0064248 20768000 1825.7 2118.5 1409.3 1354.4 1764 2145.4 1832.7 1531 1793.5 1940.5 TRUE FALSE FALSE 1611.694214 2183.768474 1485.491021 1409.638286 1633.873234 2104.480069 1903.387853 1705.282851 1719.571171 1928.95782 0.835525898 1.132097577 0.770100313 0.730777144 0.847023827 1.090993306 0.986744155 0.884043619 0.891450893 1 10.91360588 -3.410874043 15.41125386 0.920664723 0.92485713 0 0.125685856 0 0 0.01706418 0 0.000388263 3.410874043 0.004192406 DS(ph)LGTYSSR ddPTM_HeLa_CUDC101_4h_R1 2 DSLGTYSSR 9 0 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 DS(0.976)LGT(0.022)YS(0.002)SR;DS(0.999)LGT(0.001)YSSR ; 147.62 0.0009673 154468000 5862.6 4849.6 4696.5 4785.9 4891.5 4426.8 4154.6 2435.1 4667.5 5836.1 TRUE FALSE FALSE 5175.394915 4999.010428 4950.406996 4981.089688 4530.66379 4342.366166 4314.844314 2712.301941 4475.103674 5801.386618 0.892096193 0.861692343 0.853314444 0.858603299 0.780962223 0.748504875 0.743760862 0.467526493 0.771385182 1 12.50218205 -3.409163444 0.285331708 0.976735857 4.92E-22 0.641402097 0.079455078 3.218207215 0.133368448 0.02351001 1.200539152 0.000389795 3.409163444 -0.976735857 TDASSASSFLDSDELER ddPTM_HeLa_CUDC101_4h_R1 2 TDASSASSFLDSDELER 17 0 Q14498-2;Q14498;G3XAC6;Q14498-3;H0Y4X3;A0A0U1RQW2;A0A0U1RQH7 Q14498-2 RBM39 RNA-binding protein 39 0 0 ; ; 338.12 5.48E-191 44652000 1891.66 1980.98 1515.54 1602.22 1802.95 1885.32 1543.15 1837.78 1818.57 2279.7 FALSE FALSE TRUE 1669.922482 2042.011646 1597.474677 1667.565457 1669.94997 1849.360662 1602.669812 2046.985447 1743.607775 2266.140243 0.736901649 0.901096767 0.704931957 0.735861543 0.736913779 0.816083942 0.707224461 0.9032916 0.769417418 1 11.14602143 -9.365733281 0.77381221 1.02194622 0.773202688 0 0.099334201 0.42868598 0.392231568 0.069595671 0.01286583 4.31E-10 9.365733281 -0.248743533 NTDVAQS(ph)PEAPKQEAPAK ddPTM_HeLa_CUDC101_4h_R1 4 NTDVAQSPEAPKQEAPAK 18 1 A0A087WVV2;Q9P2E9-3;Q9P2E9;V9GY78 A0A087WVV2 RRBP1 Ribosome-binding protein 1 1 0 NTDVAQS(1)PEAPKQEAPAK;NT(0.003)DVAQS(0.997)PEAPKQEAPAK;NTDVAQS(1)PEAPKQEAPAK;NTDVAQS(1)PEAPKQEAPAK ;;; 125.45 4.35E-05 465139000 18030.6 16365 17008 15252.3 16356.5 15310.9 14272.3 10939.7 15190.3 15525.5 TRUE FALSE FALSE 15917.0804 16869.18625 17927.50393 15874.35472 15149.91358 15018.87009 14822.78739 12185.03123 14564.1494 15433.15364 1.031356311 1.093048553 1.161622851 1.028587876 0.981647299 0.973156261 0.960450971 0.789536054 0.943692375 1 13.91374527 -3.408316908 0.879578706 1.031815198 3.86E-15 0.626296446 0.056865727 4.091966828 0.786995483 0.008797037 5.833829301 0.000390556 3.408316908 -1.031815198 MKS(ph)SSSVTTSETQPCTPSSSDYSDLQR ddPTM_HeLa_CUDC101_4h_R1 2 MKSSSSVTTSETQPCTPSSSDYSDLQR 27 1 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 1 0 MKS(0.176)S(0.176)S(0.176)S(0.176)VT(0.176)T(0.067)S(0.027)ET(0.027)QPCTPSSSDYSDLQR;MKS(0.354)S(0.354)S(0.118)S(0.167)VT(0.001)T(0.002)S(0.002)ET(0.002)QPCTPSSSDYSDLQR ; 103.14 3.85E-07 117719000 1979.3 1970.87 2259.88 2024.81 2713.24 2618.04 3013.6 3082.68 1741.84 1790.95 TRUE FALSE FALSE 1747.289454 2031.590169 2382.055949 2107.390504 2513.089691 2568.105249 3129.835561 3433.599831 1670.040618 1780.29735 0.981459336 1.141152161 1.338010164 1.183729507 1.41161233 1.442514785 1.758040904 1.928666484 0.938068362 1 10.79790251 -3.407714025 0.33612763 0.963338153 3.482864418 0.944413723 0.074516327 1.706521646 0.088066247 0.026203405 1.9636366 0.000391098 3.407714025 2.519526266 TDCDIEDDRLAAMFR ddPTM_HeLa_CUDC101_4h_R1 2 TDCDIEDDRLAAMFR 15 1 Q13085;Q13085-3;Q13085-2;Q13085-4 Q13085 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 0 0 ; ; 89.663 0.014565 23539000 13370.4 11915.3 10355.7 10192 13056.7 12309.8 10386.9 9434.5 12200.9 10971.8 FALSE FALSE TRUE 11803.14198 12282.39627 10915.56047 10607.67381 12093.53325 12075.01107 10787.52621 10508.48534 11697.97374 10906.53925 1.082207813 1.126149734 1.000827139 0.972597593 1.10883324 1.107134977 0.98908792 0.963503189 1.072565135 1 13.41290577 S(ph)RSTTELDDYSTNK ddPTM_HeLa_CUDC101_4h_R1 1 SRSTTELDDYSTNK 14 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 S(0.521)RS(0.42)T(0.044)T(0.015)ELDDYSTNK 107.13 0.021345 18848000 3423.4 3137.2 2949.2 2879.3 3586.3 3417.1 3212.7 3333.9 4003.2 3342.4 TRUE FALSE FALSE 3022.114242 3233.853414 3108.642673 2996.730299 3321.745794 3351.924511 3336.614915 3713.4177 3838.186402 3322.519256 0.90958517 0.973313671 0.935628188 0.901945201 0.999767206 1.008850289 1.004242461 1.11765122 1.155203659 1 11.69806185 -3.406373561 0.788708696 0.953990044 1.581947129 0.163106543 0.071254939 4.286806687 0.722776327 0.006524836 3.260778758 0.000392307 3.406373561 0.627957085 GNVFSSPTAAGT(ph)PNKETAGLK ddPTM_HeLa_CUDC101_4h_R1 1 GNVFSSPTAAGTPNKETAGLK 21 1 E9PGZ1;Q05682-5;Q05682-4;E7EX44;Q05682-3;Q05682-6;Q05682-2;Q05682 E9PGZ1;E7EX44;Q05682 CALD1 Caldesmon 1 0 GNVFS(0.001)S(0.001)PT(0.091)AAGT(0.886)PNKET(0.02)AGLK 87.419 0.0010497 100540000 1339.9 1282.2 1140.4 1047.6 1423.2 1279.7 1069.5 422.21 1538.8 1581.9 TRUE FALSE FALSE 1182.838953 1321.703062 1202.053474 1090.325656 1318.213371 1255.291855 1110.750973 470.2726798 1475.370013 1572.490788 0.752207238 0.840515615 0.764426401 0.693374908 0.838296403 0.798282485 0.706364057 0.29906228 0.938237619 1 10.61883585 -3.406025655 0.117297359 1.093743481 2.18E-26 0.567467468 0.11823697 32.4622355 0.483362004 0.769887391 5.739603568 0.000392622 3.406025655 -1.093743481 TDDEVVQREEEAIQLDGLNASQIR ddPTM_HeLa_CUDC101_4h_R1 2 TDDEVVQREEEAIQLDGLNASQIR 24 1 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 0 ; ; 207.1 1.46E-27 28804000 2215.78 2373.52 2062.49 2144.56 2311.3 2244.44 2122.92 1718.87 1911.45 2561.5 FALSE FALSE TRUE 1956.049627 2446.645338 2173.994448 2232.024426 2140.800004 2201.631046 2204.801736 1914.539213 1832.659222 2546.264084 0.768203754 0.960876507 0.853797712 0.876587955 0.840761183 0.864651495 0.865896727 0.751901276 0.719744363 1 11.31416634 -9.529616901 1.255603282 1.000973648 0.843537633 0 0.10223052 0.301355135 0.842184474 0.041025044 0.009555425 2.95E-10 9.529616901 -0.157436014 GIS(ph)HVIVDEIHER ddPTM_HeLa_CUDC101_4h_R1 3 GISHVIVDEIHER 13 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 1 0 GIS(1)HVIVDEIHER;GIS(1)HVIVDEIHER;GIS(1)HVIVDEIHER ;; 124.78 0.0010991 9051000 2918.02 2041.205 2393.09 1998.83 2409.32 2290.53 1836.22 1404.18 2482.05 2371.76 TRUE FALSE FALSE 2575.974119 2104.092107 2522.467684 2080.350927 2231.589264 2246.841957 1907.04362 1564.026175 2379.738848 2357.652666 1.092601194 0.892452114 1.069906403 0.882382277 0.946530121 0.952999561 0.808873863 0.663382778 1.009367869 1 11.20313548 -3.404835257 0.488342192 1.035446556 1.09E-14 0.722157664 0.063998276 3.260959496 0.285274838 0.013694347 2.340986758 0.000393699 3.404835257 -1.035446556 EEKDKDDQEWESPS(ph)PPKPTVFISGVIAR ddPTM_HeLa_CUDC101_4h_R1 2 EEKDKDDQEWESPSPPKPTVFISGVIAR 28 3 P51397 P51397 DAP Death-associated protein 1 1 0 EEKDKDDQEWES(0.098)PS(0.896)PPKPT(0.004)VFIS(0.002)GVIAR;EEKDKDDQEWES(0.139)PS(0.847)PPKPT(0.013)VFIS(0.001)GVIAR ; 45.072 0.0175 914570000 4754.6 3997 4214.5 3484.7 4070.7 4159.1 3761.3 3231.6 4418.2 4614.1 TRUE FALSE FALSE 4197.272996 4120.142832 4442.348618 3626.821128 3770.412571 4079.772097 3906.374601 3599.472281 4236.079926 4586.655128 0.915105426 0.898289215 0.968537746 0.79073334 0.822039692 0.889487433 0.851682652 0.78477064 0.923566261 1 12.16322672 -3.404788312 0.045599624 1.365838344 0.224601547 0.492760045 0.048720851 135.0481234 0.769825251 6.309589709 14.3859817 0.000393742 3.404788312 -1.141236797 TDDYLDQPCYETINR ddPTM_HeLa_CUDC101_4h_R1 2 TDDYLDQPCYETINR 15 0 P50395-2;P50395;Q5SX87;Q5SX91 P50395-2 GDI2 Rab GDP dissociation inhibitor beta 0 0 ; ; 257.2 5.52E-69 43648000 2596.61 1929.45 2009.49 2121.47 2561.42 2273.38 1857.32 2093.17 2287.33 1404.85 FALSE FALSE TRUE 2292.239312 1988.894068 2118.129108 2207.992716 2372.46915 2230.019064 1928.957455 2331.448012 2193.045289 1396.49389 1.64142452 1.424205349 1.516747852 1.581097298 1.698875424 1.596869904 1.381285997 1.669501048 1.570393759 1 10.44759355 -9.342322913 0.747574286 0.942450327 1.567425492 0 0.200532906 0.267574929 0.227640871 0.10644989 0.019722936 4.55E-10 9.342322913 0.624975166 (ac)MEVKPPPGRPQPDS(ph)GR ddPTM_HeLa_CUDC101_4h_R1 2 MEVKPPPGRPQPDSGR 16 2 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 0 MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR ; 79.471 5.97E-08 48481000 5526.1 4678.7 4747.2 4533.2 4556.2 4458.7 3432.7 2909.8 5071.9 5253 TRUE FALSE FALSE 4878.338935 4822.845201 5003.847991 4718.08349 4220.098203 4373.657726 3565.100389 3241.03987 4862.834135 5221.754922 0.934233607 0.923606196 0.958269407 0.903543648 0.808176229 0.837583876 0.682739891 0.620680196 0.931264337 1 12.35031903 -3.403866032 0.37933834 0.980021437 2.86E-19 0.926092793 0.03189811 1.606177506 0.097877569 0.008296167 0.822167683 0.000394579 3.403866032 -0.980021437 TDEIVALK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 TDEIVALKR 9 1 P21127;P21127-8;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-9;P21127-2;P21127-3;P21127-6;P21127-10;P21127-5;Q9UQ88-9;P21127-4;P21127-12;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 0 1 TDEIVALK(1)R 94.85 0.017717 1897100 1620.3 1139.9 1218.6 1526 1693.8 1720.3 1493.8 1232 1767.7 1324.7 FALSE TRUE FALSE 1430.37089 1175.018968 1284.481202 1588.236876 1568.851749 1687.488144 1551.416366 1372.2459 1694.834658 1316.820625 1.086230624 0.89231513 0.975441284 1.206114823 1.191393663 1.28148672 1.178153149 1.042090224 1.287065698 1 10.36284312 -6.255303461 24.94647263 1.023812173 1.186041632 0.245019955 0.111230527 314.0314826 1276739.785 0.012036012 0.019634281 5.56E-07 6.255303461 0.162229459 VPFS(ph)PGPAPPPHMGELDQER ddPTM_HeLa_CUDC101_4h_R1 2 VPFSPGPAPPPHMGELDQER 20 0 I1E4Y6;Q6Y7W6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5;C9JHW1;E7ESB6 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 VPFS(1)PGPAPPPHMGELDQER;VPFS(1)PGPAPPPHMGELDQER ; 112.85 6.99E-05 30590000 1213.99 1097.2 1247.77 1130.13 1019.53 1011.24 1106.35 533.62 1462.43 1334.1 TRUE FALSE FALSE 1071.687932 1131.003431 1315.22822 1176.221586 944.3213031 991.9522818 1149.02229 594.3651438 1402.148016 1326.164714 0.808110728 0.852837826 0.991753292 0.886934763 0.712069393 0.74798573 0.866425021 0.448183501 1.057295524 1 10.37304426 -3.402505418 0.425308521 0.918717936 5.41E-44 0.591243025 0.10663811 5.966900192 0.427383437 0.02547323 3.253938473 0.000395817 3.402505418 -0.918717936 EYS(ph)PPYAPSHQQYPPSHATPLPK ddPTM_HeLa_CUDC101_4h_R1 1 EYSPPYAPSHQQYPPSHATPLPK 23 0 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 EY(0.097)S(0.762)PPY(0.097)APS(0.038)HQQY(0.003)PPS(0.002)HATPLPK 50.189 0.035738 11084000 2587.6 1211.7 1078.3 1054.7 2676.5 2155.2 1778.5 1630.1 2151.7 1654.5 TRUE FALSE FALSE 2284.285451 1249.031041 1136.59616 1097.715225 2479.059927 2114.093151 1847.097341 1815.663995 2063.006015 1644.65896 1.388911322 0.759446834 0.691083189 0.667442461 1.507339811 1.285429503 1.123088364 1.103975984 1.254367054 1 10.68357274 -3.398939984 0.003939349 1.010323383 1.226533691 0 0.282579797 7486547.564 3681.392182 97456.17164 104709.6588 0.00039908 3.398939984 0.216210308 ISAPELLLHS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 ISAPELLLHSPAR 13 0 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 0 ISAPELLLHS(1)PAR;ISAPELLLHS(1)PAR ; 116.6 0.0018352 10893500 10719.3 8697.6 7763.4 7998.1 8993 8021.8 6652.8 4861.3 9759 10628.9 TRUE FALSE FALSE 9462.799903 8965.562747 8183.112887 8324.297089 8329.604307 7868.79753 6909.400725 5414.690742 9356.729889 10565.67883 0.895616842 0.848555298 0.774499492 0.787862022 0.788364329 0.744750778 0.653947639 0.51247921 0.885577731 1 13.36709784 -3.398457505 0.200641852 1.023555276 8.80E-16 0.86047149 0.048073671 3.657617171 0.097695312 0.043753673 0.988662732 0.000399524 3.398457505 -1.023555276 SETSWES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SETSWESPK 9 0 E5RJU9;Q86UE4 E5RJU9 MTDH Protein LYRIC 1 0 SETSWES(1)PK;SETSWES(1)PK ; 141.1 0.0017174 71014000 8551.6 7871.7 7410.2 8451 6087.4 6110.1 5415.8 4858.3 7328.8 9250.9 TRUE FALSE FALSE 7549.194411 8114.217747 7810.817827 8795.668308 5638.34463 5993.560023 5624.68922 5411.349234 7026.703762 9195.875235 0.82093267 0.882375798 0.849382753 0.956479735 0.613138444 0.651766131 0.611653494 0.588453964 0.764114734 1 13.16677118 -3.397633407 0.208321101 0.992775874 1.27E-14 0.537358606 0.097553696 7.658190541 0.213683725 0.0846205 2.086042975 0.000400282 3.397633407 -0.992775874 GTNES(ph)LER ddPTM_HeLa_CUDC101_4h_R1 1 GTNESLER 8 0 P08670;B0YJC4;B0YJC5;A0A1W2PRT3;A0A1W2PR46;A0A1X7SBR3;P14136-2;P14136;P14136-3 P08670 VIM;GFAP Vimentin;Glial fibrillary acidic protein 1 0 GT(0.008)NES(0.992)LER 81.525 0.040515 17903000 2923.8 1754.4 2694.6 2527.9 2230.5 2349.9 2003 1161.4 2742.7 3065.5 TRUE FALSE FALSE 2581.076596 1808.450985 2840.278227 2630.998689 2065.960459 2305.079573 2080.256381 1293.609081 2629.644745 3047.26627 0.847013804 0.593466676 0.932074186 0.863396387 0.677971754 0.756441797 0.682663147 0.42451462 0.862952073 1 11.57329985 -3.395350696 0.155702294 1.051839622 6.34E-16 0.500405338 0.11590836 16.26393601 0.32629883 0.272207694 3.531942765 0.000402392 3.395350696 -1.051839622 TDGALLVNAMFFKPHWDEK ddPTM_HeLa_CUDC101_4h_R1 2 TDGALLVNAMFFKPHWDEK 19 1 P50454;E9PR70;E9PPV6;E9PK86;E9PMI5 P50454 SERPINH1 Serpin H1 0 0 ; ; 126.91 2.61E-05 30892000 13128.3 12442.1 11631 12411.9 14236 12847.2 12417.6 12549.6 12285.8 12759 FALSE FALSE TRUE 11589.42058 12825.42635 12259.80704 12918.11093 13185.83864 12602.16106 12896.55099 13978.19574 11779.37412 12683.1089 0.91376812 1.011221023 0.966624756 1.01852874 1.039637738 0.993617666 1.016828846 1.10211115 0.928745012 1 13.6306208 -6.219576775 1.18566491 0.961058504 1.037670789 0.485677952 0.036855575 0.365638964 1.01390295 0.007260265 0.014796193 6.03E-07 6.219576775 0.076612285 TLSPT(ph)PASATAPTSQGIPTS(ph)DEEST(ph)PKK ddPTM_HeLa_CUDC101_4h_R1 1 TLSPTPASATAPTSQGIPTSDEESTPKK 28 1 Q9NQS7-2;Q9NQS7 Q9NQS7-2 INCENP Inner centromere protein 3 0 T(0.089)LS(0.37)PT(0.521)PAS(0.011)AT(0.005)APT(0.005)S(0.004)QGIPT(0.387)S(0.509)DEES(0.499)T(0.6)PKK 65.686 0.00054525 33222000 2654.3 1972.7 2033.2 1759.3 2006.1 2060.2 1756.2 1047.8 2375.9 2311 TRUE FALSE FALSE 2343.166978 2033.476549 2143.120942 1831.051858 1858.114 2020.905118 1823.937222 1167.077317 2277.964396 2297.254069 1.019985995 0.885177036 0.932905494 0.797061101 0.808841314 0.879704663 0.793964084 0.50803145 0.991603161 1 11.16569471 -3.3950099 0.320906815 1.018885417 9.71E-18 0.76975945 0.068474086 3.996673764 0.192373723 0.025877993 1.77072349 0.000402708 3.3950099 -1.018885417 LSAEY(ph)EKVELPSEEQVSGSQGPSEEKPAPLATEVFDEK ddPTM_HeLa_CUDC101_4h_R1 1 LSAEYEKVELPSEEQVSGSQGPSEEKPAPLATEVFDEK 38 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 LS(0.103)AEY(0.891)EKVELPS(0.005)EEQVSGSQGPSEEKPAPLATEVFDEK 90.742 1.49E-11 8689700 1032 830.43 917.01 800.71 820.66 743.34 712.12 474.91 1129.5 1001.8 TRUE FALSE FALSE 911.0305244 856.014564 966.5863344 833.3664148 760.1215468 729.162028 739.5867069 528.9718347 1082.941532 995.841249 0.914835096 0.859589382 0.970622913 0.836846652 0.763295904 0.732207095 0.742675309 0.531180884 1.087464024 1 9.959771965 -3.391861004 0.293167825 0.986267441 5.60E-16 0.858072609 0.057393197 2.873073748 0.122396885 0.020111439 1.116787435 0.000405638 3.391861004 -0.986267441 GTGS(ph)ADSIATLPK ddPTM_HeLa_CUDC101_4h_R1 2 GTGSADSIATLPK 13 0 Q2NKX8;B5MDQ0 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 GT(0.002)GS(0.985)ADS(0.013)IATLPK;GT(0.02)GS(0.918)ADS(0.055)IAT(0.007)LPK ; 134.61 0.00094061 24920000 6329.8 5326.6 4515.2 4491.4 5019.9 4895.1 4103 2670.39 5454.1 5872.9 TRUE FALSE FALSE 5587.830439 5490.706232 4759.30537 4674.578705 4649.591978 4801.734123 4261.254084 2974.376404 5229.279689 5837.96773 0.957153362 0.940516715 0.815233244 0.800720203 0.796440164 0.82250097 0.729920802 0.509488326 0.895736313 1 12.51125052 -3.388941816 0.276218923 1.007129807 2.62E-16 0.796812564 0.059885437 3.40962212 0.134234493 0.026241402 1.269254445 0.000408374 3.388941816 -1.007129807 TDIFGVEETAIGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 TDIFGVEETAIGKK 14 1 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 1 TDIFGVEETAIGK(1)K 204.49 1.39E-15 258470 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 NTFTAWSDEES(ph)DY(ph)EIDDRDVNK ddPTM_HeLa_CUDC101_4h_R1 2 NTFTAWSDEESDYEIDDRDVNK 22 1 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50 Q6PKG0 LARP1 La-related protein 1 2 0 NT(0.003)FT(0.023)AWS(0.166)DEES(0.895)DY(0.913)EIDDRDVNK;NT(0.003)FT(0.014)AWS(0.076)DEES(0.938)DY(0.97)EIDDRDVNK ; 66.587 0.0042165 94069200 7209 6831.6 6422.2 5793.1 7847.5 7382 7062.6 7621.6 6942.2 7087.4 TRUE FALSE FALSE 6363.971948 7042.073499 6769.403558 6029.367658 7268.605559 7241.200649 7335.006848 8489.212136 6656.039578 7045.24383 0.903300454 0.999550004 0.960847307 0.855806811 1.031703903 1.027814058 1.041128884 1.20495647 0.944756454 1 12.78243392 -3.383317988 0.766364853 0.953324772 1.932893736 0.716436824 0.047662797 3.702138821 0.585193041 0.008562517 4.279173695 0.000413697 3.383317988 0.979568965 TDK(ac)PGAAPPSTEER ddPTM_HeLa_CUDC101_4h_R1 1 TDKPGAAPPSTEER 14 1 Q7Z3Z5;Q93074-3;Q93074;Q93074-2 Q7Z3Z5 TNRC11;MED12 Mediator of RNA polymerase II transcription subunit 12 0 1 TDK(1)PGAAPPSTEER 90.861 0.025778 2373900 389.14 263.29 152.9 270.91 230.5 375.92 353.14 175.01 289.16 361.91 FALSE TRUE FALSE 343.5255991 271.4016528 161.1662365 281.9588808 213.4964742 368.7499523 366.7607281 194.932431 277.2407024 359.7573432 0.95488141 0.754401982 0.447985954 0.783747396 0.593445772 1.024996318 1.019466969 0.541844203 0.770632504 1 8.490880325 -7.279994595 4.914868941 0.979738033 0.744291629 0.115921949 0.187586433 0.190298635 13.12414938 0.030378343 0.035477462 5.25E-08 7.279994595 -0.235446404 TDLEKDIISDTSGDFR ddPTM_HeLa_CUDC101_4h_R1 4 TDLEKDIISDTSGDFR 16 1 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5;H0YKS4;H0YNA0;H0YN52 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;;; ;;; 135.86 0.00049573 256445000 22521.3 19831.9 19886.1 18056 21947.2 21630.7 19459 19709.5 20302 20988.4 FALSE FALSE TRUE 19881.38735 20442.89733 20961.20272 18792.40172 20328.19878 21218.13044 20209.54015 21953.14981 19465.14297 20863.56006 0.952924012 0.979837442 1.004680057 0.900728431 0.974339888 1.016994721 0.968652526 1.052224536 0.932973227 1 14.34869773 -1.614345151 1.269193444 0.975074713 81.43506839 0.333608882 0.033614303 1329.162431 2.610543283 0.004664768 311149.7848 0.024302718 1.614345151 80.45999368 TDLEKDIISDTSGDFRK ddPTM_HeLa_CUDC101_4h_R1 1 TDLEKDIISDTSGDFRK 17 2 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5;H0YKS4;H0YNA0;H0YN52 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 95.195 0.0022622 205330000 3512.7 3522.1 3646.1 2771.8 4438.7 3375.7 3980.8 4150 3574.8 3267.2 FALSE FALSE TRUE 3100.946631 3630.611726 3843.219195 2884.845985 4111.265944 3311.314147 4134.340789 4622.419225 3427.445231 3247.766549 0.954793574 1.117879525 1.183342194 0.888255341 1.265874835 1.019566553 1.27297967 1.423260926 1.055323768 1 11.66523222 -1 0.382560249 0.985398503 7.295497776 0.522901851 0.109278336 27.97740836 0.338565043 0.025858883 132.7272576 0.1 1 6.310099273 RPDTTESLNSSLSNGTSDADLFDS(ph)HDDRDDDAEAGSVEEHK ddPTM_HeLa_CUDC101_4h_R1 1 RPDTTESLNSSLSNGTSDADLFDSHDDRDDDAEAGSVEEHK 41 2 Q96SU4-5;Q96SU4-4;Q96SU4-3;Q96SU4-7;Q96SU4-2;Q96SU4;Q96SU4-6 Q96SU4-5 OSBPL9 Oxysterol-binding protein-related protein 9 1 0 RPDTTESLNSSLS(0.003)NGT(0.082)S(0.017)DADLFDS(0.898)HDDRDDDAEAGSVEEHK 99.236 2.30E-16 10571000 1092.5 941.57 640.3 712.93 1208.7 1146 765.15 589.95 876.14 825.67 TRUE FALSE FALSE 964.4388061 970.5786557 674.9165548 742.0063669 1119.536609 1124.141959 794.6620918 657.1075233 840.0251384 820.7588781 1.175057416 1.182538114 0.822307955 0.904049151 1.364026194 1.369637282 0.968204077 0.800609705 1.023473715 1 9.68081464 -3.38250413 13.83661014 1.078063561 1.080024935 0 0.195173837 0 0 0.026161129 0 0.000414473 3.38250413 0.001961374 TDLGAWLCDDNFPDDESR ddPTM_HeLa_CUDC101_4h_R1 2 TDLGAWLCDDNFPDDESR 18 0 A0A087X2H1;Q9ULT8;H0YJD4 A0A087X2H1 HECTD1 E3 ubiquitin-protein ligase HECTD1 0 0 ; ; 211.83 2.17E-23 10661300 1652.5 1476.64 1222.84 1118.95 1268.58 1307.04 1394.99 1346.94 1325.04 856.84 FALSE FALSE TRUE 1458.796455 1522.133528 1288.950429 1164.585618 1174.999381 1282.11039 1448.795232 1500.270205 1270.42129 851.7434776 1.712718082 1.787079758 1.513308247 1.367296197 1.379522605 1.505277614 1.700976021 1.761410853 1.491553882 1 9.734275184 -9.314681607 0.992202258 0.993078938 1.588027001 0.180410185 0.205246388 0.274553376 0.475416848 0.117207245 0.029773683 4.85E-10 9.314681607 0.594948063 VGDSTPVSEKPVSAAVDANASES(ph)P ddPTM_HeLa_CUDC101_4h_R1 3 VGDSTPVSEKPVSAAVDANASESP 24 1 Q9H8Y8-2;Q9H8Y8;Q9H8Y8-3 Q9H8Y8-2 GORASP2 Golgi reassembly-stacking protein 2 1 0 VGDSTPVSEKPVSAAVDANAS(0.008)ES(0.992)P;VGDSTPVSEKPVSAAVDANAS(0.004)ES(0.996)P;VGDSTPVSEKPVSAAVDANAS(0.001)ES(0.999)P ;; 115.55 1.55E-07 285990000 13285.1 12447.8 11242 11081.4 12883.6 11636.8 11026.5 8382.4 12939.1 12391.7 TRUE FALSE FALSE 11727.84072 12831.30196 11849.77653 11533.34739 11933.2025 11414.84743 11451.7958 9336.618533 12405.74482 12317.99362 0.952090176 1.041671425 0.961989176 0.936300809 0.968761867 0.926680739 0.929680284 0.757965852 1.007123823 1 13.58847967 -3.382227417 0.90911023 0.977901849 1.95E-14 0.822041413 0.030611677 2.676419731 0.513094719 0.004736083 3.806864257 0.000414737 3.382227417 -0.977901849 SIS(ph)NEGLTLNNSHVSK ddPTM_HeLa_CUDC101_4h_R1 2 SISNEGLTLNNSHVSK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 S(0.126)IS(0.874)NEGLTLNNSHVSK;S(0.167)IS(0.833)NEGLTLNNSHVSK ; 202.21 7.46E-17 60506000 10198.8 5125.7 5423.4 4958.9 10168 8170.1 7886.3 9542.8 7796.8 7747.5 TRUE FALSE FALSE 9003.312124 5283.616742 5716.605409 5161.145376 9417.926898 8014.268955 8190.477233 10629.11378 7475.412604 7701.417525 1.1690461 0.686057693 0.742279637 0.670155249 1.222882264 1.040622577 1.063502557 1.380150309 0.970654114 1 12.9109083 -3.381854742 1.19598798 1.004860254 3.451761344 0.286383025 0.189419984 12.91757743 3.133245494 0.031692037 65.07121562 0.000415093 3.381854742 2.446901089 VLSKPPEGVVSEVEMLSS(ph)QER ddPTM_HeLa_CUDC101_4h_R1 1 VLSKPPEGVVSEVEMLSSQER 21 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 VLSKPPEGVVSEVEMLS(0.321)S(0.679)QER 86.508 0.00054213 4143800 4168.1 3707.6 2724.1 3364.5 4056.7 4126.4 3733.7 4188.7 3918.9 3908.8 TRUE FALSE FALSE 3679.521636 3821.826761 2871.373086 3501.718853 3757.445323 4047.695795 3877.71006 4665.524677 3757.361283 3885.550284 0.946975684 0.983599872 0.738987499 0.901215683 0.96703042 1.041730386 0.99798221 1.200737176 0.967008791 1 11.92390322 -3.381463682 1.014029557 0.953033717 2.236790633 0.514333006 0.075924765 6.548910657 1.395493845 0.012355682 14.02245217 0.000415467 3.381463682 1.283756915 IYNISGNGSPLADS(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 IYNISGNGSPLADSK 15 0 Q53HL2 Q53HL2 CDCA8 Borealin 1 0 IYNISGNGS(0.467)PLADS(0.533)K;IYNISGNGS(0.495)PLADS(0.505)K ; 175.27 3.90E-07 102173000 7212.4 7519.9 6746 6422 6710.5 6717.4 5322 3822 6615.3 8074.5 TRUE FALSE FALSE 6366.973405 7751.579206 7110.709166 6683.916918 6215.479784 6589.276787 5527.271323 4257.081031 6342.614534 8026.472515 0.793246771 0.965751666 0.885907122 0.832734044 0.774372525 0.820943045 0.688630194 0.530380067 0.790211955 1 12.97055037 -3.380788096 0.388872913 0.919401008 6.53E-41 0.68798567 0.071004767 4.673729877 0.290918085 0.021356606 2.316728116 0.000416114 3.380788096 -0.919401008 VDNLTYRT(ph)SPDTLR ddPTM_HeLa_CUDC101_4h_R1 2 VDNLTYRTSPDTLR 14 1 J3QL05;J3KP15;Q01130-2;Q01130 J3QL05 SRSF2 Serine/arginine-rich splicing factor 2 1 0 VDNLT(0.002)YRT(0.499)S(0.499)PDT(0.001)LR;VDNLTYRT(0.361)S(0.278)PDT(0.361)LR ; 191.44 2.26E-10 391804000 5057.8 6299.7 6039.6 5688.6 8005.2 6374.9 6632.9 8154.4 6167 4701.3 TRUE FALSE FALSE 4464.932351 6493.78629 6366.119045 5920.605696 7414.672345 6253.309404 6888.733175 9082.663935 5912.79365 4673.336459 0.955405713 1.389539646 1.362221424 1.266890529 1.586590739 1.33808243 1.474050336 1.943507388 1.265218908 1 12.19023719 -3.374879057 0.228843008 0.899913401 2.969411318 0.556049283 0.178426227 6.348908294 0.19646396 0.126966141 3.979664481 0.000421814 3.374879057 2.069497917 TDMDNQIVVSDYAQMDR ddPTM_HeLa_CUDC101_4h_R1 5 TDMDNQIVVSDYAQMDR 17 0 P50991-2;P50991 P50991-2 CCT4 T-complex protein 1 subunit delta 0 0 ;;;; ;;;; 166.62 4.68E-05 75461500 5631.78 5256.07 4744.75 4815.95 5450.91 5520.45 4568.34 4996.41 5627.18 5566.2 FALSE FALSE TRUE 4971.631286 5418.003287 5001.265537 5012.365257 5048.807229 5415.156614 4744.542404 5565.181118 5395.225259 5533.091995 0.898526771 0.979199929 0.903882593 0.905888654 0.912474839 0.978685447 0.857484822 1.005799492 0.975083238 1 12.4338702 -9.459427442 1.111649801 1.001342388 0.925815548 0.205383651 0.043596441 0.488253281 1.047812589 0.029454729 0.006772595 3.47E-10 9.459427442 -0.07552684 TDMFQTVDLFEGK ddPTM_HeLa_CUDC101_4h_R1 1 TDMFQTVDLFEGK 13 0 Q01995;H0YCU9 Q01995 TAGLN Transgelin 0 0 125.03 0.00027562 0 986.38 1009.1 945.23 1018 826.88 785.11 890.22 868.47 836.11 917.71 FALSE FALSE TRUE 870.7580317 1040.189175 996.331993 1059.51844 765.8827098 770.1353348 924.5560836 967.3331143 801.6451919 912.2514201 0.954515403 1.140243963 1.092168202 1.161432492 0.839552225 0.844213906 1.013488237 1.060379949 0.878754666 1 9.833287681 -4.514686211 24.81972661 0.99146912 1.048657063 0.036898463 0.10963803 984.1534693 2981513.964 0.014940155 0.0621883 3.06E-05 4.514686211 0.057187942 LLSSNEDDANILS(ph)SPTDR ddPTM_HeLa_CUDC101_4h_R1 1 LLSSNEDDANILSSPTDR 18 0 H0YEG1;F5GY88;A0A0B4J1W0;O75448-2;O75448 H0YEG1 MED24 Mediator of RNA polymerase II transcription subunit 24 1 0 LLS(0.372)S(0.117)NEDDANILS(0.409)S(0.093)PT(0.008)DR 142.97 9.04E-05 10475000 921.53 543.97 685.42 431.17 924.81 1127.6 1357.3 3073.3 614.61 624.92 TRUE FALSE FALSE 813.5096503 560.7290709 722.4758785 448.7549763 856.5886088 1106.092909 1409.651516 3423.152049 589.2755157 621.202948 1.309571458 0.90265037 1.163027125 0.722396727 1.378919098 1.780566097 2.269228631 5.510521256 0.948603862 1 9.278920866 -3.374501175 1.025344192 1.108571138 24.93112342 0.974437013 0.214748482 1.00242351 0.21307779 0.03337585 40.51717391 0.000422181 3.374501175 23.82255228 up VASGSTATAAAGPSCALK(ac)AGK ddPTM_HeLa_CUDC101_4h_R1 2 VASGSTATAAAGPSCALKAGK 21 1 P41134-2;P41134 P41134-2 ID1 DNA-binding protein inhibitor ID-1 0 1 ; VASGSTATAAAGPSCALK(1)AGK;VASGSTATAAAGPSCALK(1)AGK 352.12 8.58E-203 10193500 2894.3 2851 2913.7 2967.6 2631.78 2670.9 2818.8 4838.4 2649.8 1972.21 FALSE TRUE FALSE 2555.034541 2938.835931 3071.223435 3088.631555 2437.638833 2619.957033 2927.52206 5389.183899 2540.574122 1960.479207 1.303270411 1.499039582 1.566567717 1.575447239 1.243389281 1.336386034 1.49326861 2.748911531 1.295894449 1 10.93699063 -2.130685229 1.129418399 1.238673292 199.9658122 0.816152474 0.191395971 71.49630054 0.88985477 0.036479944 35948.67712 0.007401415 2.130685229 198.727139 QPLSEASNQQPLS(ph)GGEEK ddPTM_HeLa_CUDC101_4h_R1 2 QPLSEASNQQPLSGGEEK 18 0 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 0 QPLSEASNQQPLS(1)GGEEK;QPLSEASNQQPLS(1)GGEEK ; 306.01 1.90E-144 40746000 4335.9 3938.9 3283.4 3343.4 3535.2 3201.2 2663.4 2193.4 3635.6 4288.4 TRUE FALSE FALSE 3827.652375 4060.25284 3460.910536 3479.758303 3274.415339 3140.142444 2766.12823 2443.08779 3485.739029 4262.892406 0.897900301 0.952464302 0.81186908 0.816290437 0.768120569 0.736622496 0.648885303 0.573105666 0.81769341 1 12.05761693 -3.374431774 0.241275197 1.00075788 7.61E-22 0.771975446 0.059036157 2.25411957 0.074385336 0.02031742 0.722474883 0.000422249 3.374431774 -1.00075788 LITPPPPPPS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 1 LITPPPPPPSPER 13 0 J3QKY4;J3QR53;Q96HE9 J3QKY4 PRR11 Proline-rich protein 11 1 0 LITPPPPPPS(1)PER 170.26 4.88E-07 17102000 1543.1 1280.1 1372 1137.8 1252.2 1165.8 1123.1 749.78 1494.8 1324.3 TRUE FALSE FALSE 1362.220157 1319.538364 1446.17447 1184.204402 1159.827701 1143.564307 1166.418343 835.1319245 1433.183711 1316.423005 1.034789086 1.002366533 1.098563657 0.899562221 0.881044844 0.868690613 0.886051322 0.634394812 1.088695432 1 10.36240743 -3.37397879 0.48937914 1.020646509 2.44E-12 0.795084959 0.059060674 2.880920422 0.246973792 0.011295382 2.058174813 0.000422689 3.37397879 -1.020646509 TDPASNTK(ac)LIAMK ddPTM_HeLa_CUDC101_4h_R1 5 TDPASNTKLIAMK 13 1 E7EWM1;Q15596 E7EWM1 NCOA2 Nuclear receptor coactivator 2 0 1 ;;;; TDPASNTK(1)LIAMK;TDPASNTK(1)LIAMK;TDPASNTK(1)LIAMK;TDPASNTK(1)LIAMK;TDPASNTK(1)LIAMK 196.67 2.77E-11 29000800 3294.07 3167.38 3373.21 3443.53 2917.75 2992.8 3112.73 2570.16 1987.86 2370.03 FALSE TRUE FALSE 2907.944108 3264.963224 3555.575936 3583.972038 2702.513395 2935.717326 3232.789039 2862.736625 1905.919569 2355.932956 1.234306817 1.385847256 1.509200814 1.521253832 1.147109636 1.246095445 1.372190592 1.215118036 0.808987185 1 11.20208277 -8.305052203 0.874296002 1.030583551 1.340139929 0.578521675 0.136620067 0.30840776 0.497388813 0.044715058 0.027614372 4.95E-09 8.305052203 0.309556378 EQQSWVISPPQPS(ph)PQK ddPTM_HeLa_CUDC101_4h_R1 2 EQQSWVISPPQPSPQK 16 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 EQQSWVIS(0.026)PPQPS(0.974)PQK;EQQS(0.001)WVIS(0.164)PPQPS(0.835)PQK ; 125.18 0.00051801 12719400 2661.04 2238.71 2264.26 2604.41 2658.9 2257.31 2564.6 2708.6 3146.1 2817.89 TRUE FALSE FALSE 2349.116925 2307.682002 2386.672745 2710.629097 2462.758244 2214.255573 2663.517481 3016.936075 3016.416426 2801.129065 0.838632162 0.82383994 0.852039549 0.967691611 0.879201989 0.790486808 0.950872816 1.077042866 1.076857352 1 11.45179274 -3.370676233 14.63884185 0.912235006 0.90672616 0 0.099650148 0 0 0.012473732 0 0.000425916 3.370676233 -0.005508846 TDPVPEEGEDVAATISATETLSEEEQEELRR ddPTM_HeLa_CUDC101_4h_R1 3 TDPVPEEGEDVAATISATETLSEEEQEELRR 31 1 H0YC42;P55327-2;P55327-4;P55327;P55327-7;P55327-5;P55327-6;P55327-3;E5RFR7;H0YC44;P55327-8 H0YC42 TPD52 Tumor protein D52 0 0 ;; ;; 169.88 7.13E-19 18394900 1331.62 1249.4 1179 803.25 1217.96 1210.49 1048.67 1126.89 1359.71 1227.17 FALSE FALSE TRUE 1175.529522 1287.892533 1242.740306 836.0100069 1128.113517 1187.40192 1089.117553 1255.170603 1303.662178 1219.870738 0.96365089 1.055761478 1.018747534 0.685326716 0.924781194 0.973383395 0.892813902 1.028937381 1.068688786 1 10.25251257 NPLPPILGS(ph)PTK ddPTM_HeLa_CUDC101_4h_R1 1 NPLPPILGSPTK 12 0 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 NPLPPILGS(0.641)PT(0.359)K 102.64 0.0094343 38034000 2644.8 2161.3 2069.6 2260.8 2455.4 1833.8 2039.9 1529.3 1633.2 1912.7 TRUE FALSE FALSE 2334.780553 2227.887091 2181.488836 2353.005196 2274.270034 1798.82332 2118.579626 1703.38933 1565.878805 1901.323175 1.227976697 1.171756133 1.147352993 1.237561939 1.196151219 0.946090251 1.114265925 0.89589679 0.823573196 1 10.89278806 -3.370264597 0.929807554 1.127945459 0.054437596 0.151844249 0.12964504 9.402321318 1.810317708 0.016834623 15.17258848 0.00042632 3.370264597 -1.073507863 S(ph)SPIMR ddPTM_HeLa_CUDC101_4h_R1 2 SSPIMR 6 0 A0A087WZV0;O43314-2;O43314;A0A087WWN8;K7ENU7;H0Y9S9 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 0 S(0.5)S(0.5)PIMR;S(0.5)S(0.5)PIMR ; 111.65 0.019332 117830000 5065.2 2693.6 4687 4916.8 3622.9 3116.6 3914.6 2168.4 4400.7 4627.4 TRUE FALSE FALSE 4471.464934 2776.586623 4940.393397 5117.328356 3355.645885 3057.156048 4065.587433 2415.241891 4219.301283 4599.876019 0.972083794 0.603622057 1.074027512 1.11249267 0.729507898 0.664617054 0.883847177 0.525066737 0.917264132 1 12.16737926 -3.361313976 0.356420281 0.988181862 1.42E-10 0.312387325 0.161071032 9.066091118 0.49456157 0.048101141 4.397049927 0.000435197 3.361313976 -0.988181862 RLPQDHADS(ph)CVVSS(ph)DDEELSR ddPTM_HeLa_CUDC101_4h_R1 1 RLPQDHADSCVVSSDDEELSR 21 1 P78317;D6RA71 P78317 RNF4 E3 ubiquitin-protein ligase RNF4 2 0 RLPQDHADS(0.969)CVVS(0.336)S(0.695)DDEELS(0.001)R 118.09 8.80E-07 27684000 2004.3 1641.5 1275.1 1312.5 1603.7 1419.9 1332 901.41 1868 1430.1 TRUE FALSE FALSE 1769.358992 1692.072669 1344.035763 1366.029423 1485.398246 1392.817773 1383.375686 1004.022871 1791.000249 1421.593702 1.244630579 1.190264608 0.945442964 0.960914094 1.044882405 0.97975798 0.973116077 0.7062657 1.259853816 1 10.47329348 -3.359936517 0.529040762 1.10929348 1.02E-17 0.580238783 0.102068735 5.965422969 0.564101113 0.022853366 5.082555976 0.00043658 3.359936517 -1.10929348 VHVQFFDDS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 4 VHVQFFDDSPTR 12 0 A0A087WWJ1;A0A494C0M1;P52701-2;P52701;C9J7Y7;C9JH55;C9J8Y8;F8WAX8 A0A087WWJ1 MSH6 DNA mismatch repair protein Msh6 1 0 VHVQFFDDS(0.978)PT(0.022)R;VHVQFFDDS(0.999)PT(0.001)R;VHVQFFDDS(0.999)PT(0.001)R;VHVQFFDDS(0.999)PT(0.001)R ;;; 246.63 2.68E-55 141181000 6395.8 5505.4 5076.35 5372.62 5676.8 5136.05 5127.1 3714.66 5757.4 5418.8 TRUE FALSE FALSE 5646.094019 5675.014848 5350.792836 5591.738666 5258.033774 5038.088403 5324.853964 4137.521879 5520.077535 5386.568737 1.048180074 1.053549138 0.993358314 1.038089169 0.976137878 0.935305693 0.988542841 0.768118274 1.0247855 1 12.39515085 -3.357827444 0.832319873 1.022374163 1.87E-16 0.822842623 0.033388841 2.714339023 0.456619752 0.005376946 3.65490629 0.000438705 3.357827444 -1.022374163 AEGEPQEES(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 4 AEGEPQEESPLK 12 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 AEGEPQEES(1)PLK;AEGEPQEES(1)PLK;AEGEPQEES(1)PLK;AEGEPQEES(1)PLK ;;; 172.85 7.08E-07 288861000 16825.5 11699.3 11689.8 12406.5 11859.6 11824.3 11431.2 6577.71 13225.4 13971.9 TRUE FALSE FALSE 14853.2404 12059.74157 12321.78595 12912.4907 10984.74094 11598.77118 11872.10521 7326.489918 12680.24341 13888.79452 1.069440575 0.868307293 0.887174616 0.929705647 0.790906721 0.835117199 0.854797383 0.527510858 0.912983729 1 13.76163377 -3.355917524 0.319800185 1.037991082 4.84E-13 0.621730641 0.0841794 4.661507294 0.218994784 0.029552057 2.1074401 0.000440639 3.355917524 -1.037991082 ELVSSS(ph)SSGSDSDSEVDK ddPTM_HeLa_CUDC101_4h_R1 1 ELVSSSSSGSDSDSEVDK 18 0 P53999;D6RC37;D6R970 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 ELVS(0.001)S(0.093)S(0.607)S(0.295)S(0.004)GSDSDSEVDK 154.67 4.61E-05 20827000 2202.5 1726.4 2155.5 1653.9 1952.8 1735 1505 1208.7 1982.9 2401.1 TRUE FALSE FALSE 1944.326289 1779.588338 2272.03285 1721.353191 1808.745835 1701.907766 1563.048354 1346.293522 1901.164023 2386.81815 0.814610149 0.745590248 0.951908653 0.721191596 0.757806301 0.713044588 0.654866963 0.564053664 0.796526548 1 11.22087294 -3.347638027 0.102333758 1.159300755 1.76E-16 0.516400544 0.085364983 22.46469937 0.285691027 0.622202671 3.779930374 0.00044912 3.347638027 -1.159300755 S(ph)RSWEDSPER ddPTM_HeLa_CUDC101_4h_R1 1 SRSWEDSPER 10 1 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6;A0A3B3IU26;B1AN86 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 S(0.505)RS(0.494)WEDSPER 67.214 0.039853 26268000 1528.9 974.62 1355 1260.9 1086.6 1191 915.38 739.65 1321 1411.7 TRUE FALSE FALSE 1349.68466 1004.646887 1428.255399 1312.324952 1006.443683 1168.283659 950.6865132 823.8487662 1266.547821 1403.303146 0.961791231 0.715915795 1.017781085 0.935168539 0.7171962 0.832524079 0.677463395 0.587078258 0.902547553 1 10.45461098 -3.343358298 0.296580132 0.998741833 9.63E-16 0.573133998 0.093694465 5.580872611 0.235954822 0.037037628 2.23805518 0.000453567 3.343358298 -0.998741833 SCGTDSQS(ph)ENEAS(ph)PVKRPR ddPTM_HeLa_CUDC101_4h_R1 1 SCGTDSQSENEASPVKRPR 19 2 H0Y398;C9JQ48;Q9H8U3 H0Y398 ZFAND3 AN1-type zinc finger protein 3 2 0 SCGT(0.003)DS(0.026)QS(0.971)ENEAS(1)PVKRPR 57.216 0.019719 6615200 1575.4 1330.5 1183 1032.8 1391.5 970.11 924.91 1243.7 1212.6 921.15 TRUE FALSE FALSE 1390.734 1371.491128 1246.956558 1074.922048 1288.851817 951.6067681 960.5840885 1385.277781 1162.616115 915.6709588 1.51881414 1.497799089 1.361795464 1.173917375 1.407549082 1.03924533 1.04904942 1.512855429 1.269687657 1 9.838685457 -3.342922731 14.27771346 1.26554131 1.226756934 0 0.196389684 0 0 0.031494314 0 0.000454022 3.342922731 -0.038784376 LLQNGNS(ph)PAEVAK ddPTM_HeLa_CUDC101_4h_R1 2 LLQNGNSPAEVAK 13 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 LLQNGNS(1)PAEVAK;LLQNGNS(1)PAEVAK ; 141.06 0.0007187 15683300 3264.9 2885.9 2658.4 2779.8 2782.2 2587.6 2236.72 1685.25 3322.9 3116.5 TRUE FALSE FALSE 2882.193371 2974.811158 2802.121145 2893.172259 2576.962649 2538.245841 2322.99104 1877.092048 3185.928656 3097.962919 0.930351152 0.960247503 0.904504417 0.933895058 0.831824885 0.81932738 0.749844688 0.605911722 1.028394703 1 11.59710416 -3.337596953 0.397010434 0.975836536 6.94E-21 0.942499345 0.029057561 1.544801977 0.096405524 0.006896677 0.838409507 0.000459624 3.337596953 -0.975836536 KSLPAPVAQRPDS(ph)PGGGLQAPGQK ddPTM_HeLa_CUDC101_4h_R1 1 KSLPAPVAQRPDSPGGGLQAPGQK 24 2 Q5JVS0-2;Q5JVS0 Q5JVS0-2 HABP4 Intracellular hyaluronan-binding protein 4 1 0 KSLPAPVAQRPDS(1)PGGGLQAPGQK 64.538 0.0014874 62162000 4829.2 4525.7 4884.4 4150.3 5212.9 4180 4208.5 3511.2 4315.3 4171.9 TRUE FALSE FALSE 4263.128497 4665.131453 5148.465439 4319.567173 4828.354753 4100.273464 4370.823255 3910.900815 4137.421508 4147.085353 1.027981856 1.124918118 1.241465994 1.041591095 1.164276677 0.988712099 1.053950638 0.943048064 0.997669726 1 12.01788203 -3.337248542 14.07420124 1.043632482 1.059920252 0 0.088207647 15438748.41 0 0.01218621 0 0.000459993 3.337248542 0.016287771 ESEQES(ph)EEEILAQK ddPTM_HeLa_CUDC101_4h_R1 2 ESEQESEEEILAQK 14 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 ES(0.047)EQES(0.953)EEEILAQK;ES(0.095)EQES(0.905)EEEILAQK ; 180.93 8.80E-11 49725100 7864.29 6249.61 5872.71 6804.08 6311.54 4944.42 5089.1 4055.53 6646.27 7867.62 TRUE FALSE FALSE 6942.449848 6442.153076 6190.206467 7081.579792 5845.950269 4850.113426 5285.388292 4517.195142 6372.307937 7820.823046 0.887687882 0.823718046 0.7915032 0.905477563 0.747485301 0.620153838 0.675809727 0.577585647 0.814787382 1 12.93310473 -3.336702249 0.189491364 1.029846722 1.72E-15 0.661931601 0.072908241 5.369975585 0.131412481 0.066387881 1.382866548 0.000460572 3.336702249 -1.029846722 EPAPAS(ph)PAPAGVEIR ddPTM_HeLa_CUDC101_4h_R1 2 EPAPASPAPAGVEIR 15 0 Q14195-2 Q14195-2 DPYSL3 Dihydropyrimidinase-related protein 3 1 0 EPAPAS(1)PAPAGVEIR;EPAPAS(1)PAPAGVEIR ; 205.33 1.54E-17 64949000 3326.7 2735.9 2705.7 2647.5 3045 2702.9 2478.56 1559.18 2768 3200.7 TRUE FALSE FALSE 2936.749269 2820.189836 2851.978326 2755.476493 2820.376416 2651.346686 2574.158889 1736.670749 2653.901868 3181.662094 0.923023622 0.88638886 0.896380018 0.866049383 0.886447502 0.833321267 0.809061055 0.545837583 0.834124363 1 11.63556491 -3.336010968 0.425755362 0.962669403 1.96E-41 0.708748327 0.060956599 2.879114819 0.197711133 0.011665055 1.669020004 0.000461306 3.336010968 -0.962669403 EAEALLQSMGLTPESPIVPPPMS(ph)PSSK ddPTM_HeLa_CUDC101_4h_R1 2 EAEALLQSMGLTPESPIVPPPMSPSSK 27 0 E7EQL5;Q13409-2;E7EV09;Q13409-3;Q13409-6;E7EQU2;E9PGG1;E7ETL8 E7EQL5 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 0 EAEALLQSMGLT(0.001)PES(0.027)PIVPPPMS(0.741)PS(0.108)S(0.122)K;EAEALLQSMGLTPESPIVPPPMS(0.59)PS(0.292)S(0.118)K ; 96.699 1.11E-05 20176800 5482.8 5024.8 4135.5 4104.8 5669.8 5690.9 5045.3 5683.9 5203.9 5413.1 TRUE FALSE FALSE 4840.114495 5179.608132 4359.077639 4272.211486 5251.55015 5582.355564 5239.898911 6330.932201 4989.393039 5380.90264 0.899498619 0.96259094 0.810101563 0.793958146 0.975960819 1.0374385 0.973795525 1.176555798 0.927240906 1 12.39363249 -3.333869861 0.956507324 0.933480444 2.203678753 0.535719997 0.07131238 7.066346267 1.317077777 0.012430398 14.19264559 0.000463586 3.333869861 1.27019831 QLS(ph)SGVSEIR ddPTM_HeLa_CUDC101_4h_R1 1 QLSSGVSEIR 10 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 0 QLS(0.538)S(0.462)GVSEIR 136.93 0.0015751 25486000 1501.8 1043.5 795.49 1090 1501.4 1682.4 2081.9 3806.6 1126.9 1039.9 TRUE FALSE FALSE 1325.761281 1075.648998 838.4965956 1134.454911 1390.644713 1650.311023 2162.19958 4239.927957 1080.448705 1033.714629 1.282521543 1.040566679 0.811149008 1.097454636 1.345288801 1.596486088 2.091679387 4.1016426 1.045209843 1 10.01362225 -3.328386694 0.911624466 1.102396415 16.46542175 0.977722881 0.137498549 1.107857678 0.195856827 0.025465406 25.38908954 0.000469476 3.328386694 15.36302533 up FTATMS(ph)TPDKK ddPTM_HeLa_CUDC101_4h_R1 2 FTATMSTPDKK 11 1 Q5TKA1-2;B1B047;C9J5J4;H0Y322;Q5TKA1;H7C4T7;Q5TKA1-3 Q5TKA1-2 LIN9 Protein lin-9 homolog 1 0 FTAT(0.002)MS(0.61)T(0.388)PDKK;FTAT(0.001)MS(0.706)T(0.293)PDKK ; 132.5 0.0037142 45952000 5508.8 4737.4 5346.3 4623.3 4986.2 4971 3763.3 2993.5 5343.8 5742.9 TRUE FALSE FALSE 4863.066815 4883.353679 5635.33715 4811.858158 4618.37796 4876.186457 3908.451742 3334.26794 5123.526302 5708.740975 0.85186328 0.85541693 0.987141854 0.842893061 0.80900114 0.854161448 0.684643384 0.584063624 0.897487962 1 12.47895689 -3.327107546 0.397789514 0.939349183 5.25E-34 0.784422171 0.055256398 4.027124624 0.250375534 0.017017817 2.11264806 0.000470861 3.327107546 -0.939349183 TDTESELDLISR ddPTM_HeLa_CUDC101_4h_R1 2 TDTESELDLISR 12 0 A0A494C1T2;V9GZ78;V9GYY3;A0A384N5Y3;F5H2F4;P11586 A0A494C1T2 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed" 0 0 ; ; 213.35 6.68E-23 27887000 6046.3 5775.5 5292.1 5321.3 5876.6 6236.1 5370.9 4874.4 5558.4 5519.6 FALSE FALSE TRUE 5337.56188 5953.436309 5578.206934 5538.325615 5443.094926 6117.156783 5578.057412 5429.281993 5329.280399 5486.769174 0.972805983 1.085053174 1.016665137 1.009396503 0.992040079 1.114892314 1.016637886 0.989522581 0.971296628 1 12.42174117 -7.30904115 24.99930792 0.987158377 1.031625267 0.264664529 0.038330941 428.1433335 224849.7873 0.006408965 0.00732894 4.91E-08 7.30904115 0.04446689 KKPAPLPPSSS(ph)PGPPSQDSR ddPTM_HeLa_CUDC101_4h_R1 1 KKPAPLPPSSSPGPPSQDSR 20 2 Q8N3F8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 KKPAPLPPS(0.082)S(0.261)S(0.648)PGPPS(0.006)QDS(0.002)R 48.198 0.029094 32861000 3008.8 2617.1 2678.8 2433.9 3181.5 2226.6 2251.6 1651.6 3023.8 2987.7 TRUE FALSE FALSE 2656.113025 2697.729749 2823.624031 2533.164962 2946.807083 2184.131315 2338.444966 1839.611468 2899.157684 2969.929028 0.894335521 0.908348221 0.950737881 0.852937878 0.992214648 0.735415323 0.787374023 0.619412602 0.976170695 1 11.53621274 -3.325285831 0.461240316 0.953763402 2.79E-15 0.766136535 0.057155565 3.532005241 0.268948656 0.01273247 2.227642093 0.00047284 3.325285831 -0.953763402 SSSSS(ph)QESLNRPLSAK ddPTM_HeLa_CUDC101_4h_R1 2 SSSSSQESLNRPLSAK 16 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 SSS(0.002)S(0.102)S(0.897)QESLNRPLSAK;SSSS(0.047)S(0.944)QES(0.008)LNRPLSAK ; 170.09 3.74E-06 29562000 9220 7561.1 7943.2 7002.7 7211.7 6767.3 6475.2 4422.9 7630.5 8246.5 TRUE FALSE FALSE 8139.245577 7794.048529 8372.633419 7288.300374 6679.707259 6638.225028 6724.950633 4926.385058 7315.96756 8197.449451 0.992899758 0.950789459 1.021370546 0.889093665 0.8148519 0.809791517 0.820371101 0.600965591 0.892468762 1 13.00095939 -3.320443354 0.376996692 1.005992954 3.85E-18 0.783757409 0.055601396 2.45204133 0.14109584 0.011736601 1.298085508 0.000478142 3.320443354 -1.005992954 ALANS(ph)LACQGK ddPTM_HeLa_CUDC101_4h_R1 2 ALANSLACQGK 11 0 P04075;J3KPS3;P04075-2;H3BR68 P04075 ALDOA Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase 1 0 ALANS(1)LACQGK;ALANS(1)LACQGK ; 139.46 0.0014421 37469000 5135.2 4353.1 4908.8 4463.4 5330.3 4366.6 4256.1 3784.2 4599.9 4294.2 TRUE FALSE FALSE 4533.25964 4487.213851 5174.184576 4645.436744 4937.094388 4283.31438 4420.259203 4214.978032 4410.290175 4268.657907 1.061987102 1.051200154 1.212133811 1.088266346 1.156591719 1.003433508 1.035514979 0.987424648 1.033179578 1 12.05956683 -3.316848321 14.01627889 1.051040682 1.070952323 0 0.069337059 0 0 0.009765974 0 0.000482116 3.316848321 0.019911641 KKLDDQS(ph)EDEALELEGPLITPGSGSIYSSPGLYSK ddPTM_HeLa_CUDC101_4h_R1 2 KKLDDQSEDEALELEGPLITPGSGSIYSSPGLYSK 35 2 Q96AC1;Q96AC1-3;G3V3J0;Q96AC1-2 Q96AC1 FERMT2 Fermitin family homolog 2 1 0 KKLDDQS(1)EDEALELEGPLITPGSGSIYSSPGLYSK;KKLDDQS(0.624)EDEALELEGPLIT(0.165)PGS(0.035)GS(0.038)IY(0.04)S(0.045)S(0.049)PGLY(0.003)S(0.001)K ; 71.903 1.32E-06 119166000 3849.2 3467.1 2997.5 2949.6 3461.5 3625.3 3336.8 3801.6 3602.6 3184.4 TRUE FALSE FALSE 3398.002611 3573.917241 3159.553917 3069.897437 3206.152041 3556.153443 3465.501494 4234.358777 3454.099303 3165.459047 1.073462825 1.129036007 0.998134511 0.969811137 1.012855322 1.123424246 1.094786393 1.337676057 1.091184328 1 11.62819902 -3.312391082 1.047730686 1.035188671 2.925514868 0.739442645 0.051231638 4.068015262 0.784929091 0.007965134 13.77895623 0.00048709 3.312391082 1.890326197 GNLELRPGGAHPGT(ph)CSPSRPGS ddPTM_HeLa_CUDC101_4h_R1 1 GNLELRPGGAHPGTCSPSRPGS 22 2 Q5JTU8;B1AMJ5;A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8 Q5JTU8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 0 GNLELRPGGAHPGT(0.934)CS(0.052)PS(0.009)RPGS(0.005) 63.044 0.0092327 17210000 3477.7 2819.4 3126.6 2790.6 3250.3 3050.3 2599.9 2425.7 3219.3 2599.4 TRUE FALSE FALSE 3070.049278 2906.262372 3295.633453 2904.41273 3010.531845 2992.12061 2700.179014 2701.831883 3086.599091 2583.938653 1.188127773 1.124741243 1.275430223 1.12402542 1.165094164 1.157968904 1.044985728 1.045625398 1.194532652 1 11.3353561 -3.311557298 14.0394371 1.110814953 1.121817785 0 0.08153859 0 0 0.012532156 0 0.000488026 3.311557298 0.011002832 TDYIPLLDVDEK ddPTM_HeLa_CUDC101_4h_R1 2 TDYIPLLDVDEK 12 0 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;H7C456;A0A0J9YW37;A0A0J9YVV8;P27816-7 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 0 0 ; ; 181.68 8.67E-10 25912000 10016 9373 9177.7 8228.8 10671.2 9905 9446.2 8671.9 9260 10868.8 FALSE FALSE TRUE 8841.939663 9661.77102 9673.874223 8564.406032 9884.006836 9716.078628 9810.543098 9659.074043 8878.298881 10804.15189 0.818383502 0.894264641 0.895384878 0.792695819 0.914834124 0.899291191 0.90803454 0.894015017 0.821748802 1 13.39929821 -9.483872177 1.209358126 1.000422587 0.872162834 0 0.066492409 0.271077726 0.705644422 0.028970927 0.006986173 3.28E-10 9.483872177 -0.128259752 FFQGS(ph)QEFLASASASAER ddPTM_HeLa_CUDC101_4h_R1 1 FFQGSQEFLASASASAER 18 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 FFQGS(0.984)QEFLAS(0.016)ASASAER 130.47 6.40E-05 12834000 749.77 658.08 647.91 669.88 460.89 834.15 653.95 804.75 769.66 754.82 TRUE FALSE FALSE 661.8830972 678.3546648 682.9379744 697.2006019 426.8910629 818.2399785 679.1730706 896.3594871 737.934289 750.3302971 0.882122313 0.904074735 0.910183125 0.92919159 0.568937526 1.090506383 0.905165463 1.194619877 0.983479265 1 9.551382003 -3.309017338 15.32882905 0.932723336 1.031430885 0 0.154139188 0 0 0.018912473 0 0.000490888 3.309017338 0.098707549 EGDPVSLSTPLETEFGSPSELS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 EGDPVSLSTPLETEFGSPSELSPR 24 0 E9PMR3;E9PMG4;Q9BUR4 E9PMR3 WRAP53 Telomerase Cajal body protein 1 1 0 EGDPVSLSTPLETEFGS(0.004)PS(0.204)ELS(0.792)PR;EGDPVSLSTPLETEFGSPS(0.046)ELS(0.954)PR;EGDPVSLSTPLETEFGSPS(0.141)ELS(0.859)PR ;; 212.51 3.89E-28 69468400 9313.1 9190.2 8129.4 7550.1 9599.5 10302 9328.8 10775.5 9413.2 8947.1 TRUE FALSE FALSE 8221.432536 9473.339169 8568.899954 7858.025712 8891.36401 10105.50651 9688.614941 12002.13936 9025.183912 8893.882251 0.92439188 1.065152304 0.963460018 0.883531566 0.999716857 1.136231201 1.089357231 1.349482602 1.014763144 1 13.11859759 -3.307405924 0.723009807 0.966110346 2.517264598 0.775413767 0.059116007 3.009647905 0.404489959 0.009748614 5.269755919 0.000492713 3.307405924 1.551154251 TDYNASVSVPDSSGPER ddPTM_HeLa_CUDC101_4h_R1 3 TDYNASVSVPDSSGPER 17 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ;; ;; 225.21 3.76E-32 35250400 5437.9 4910.8 4529.4 4082 5353.9 4740.3 4637.6 4808.9 5078.4 4510.6 FALSE FALSE TRUE 4800.477605 5062.095927 4774.273065 4248.481604 4958.953463 4649.886675 4816.473785 5356.325738 4869.066203 4483.770751 1.070634043 1.128981879 1.064789734 0.947524269 1.105978369 1.037048265 1.074201616 1.194602944 1.085931122 1 12.1304968 -2.319606177 0.010621221 1.23E-07 2.247279805 0.061159151 0.062475789 9076.736648 9.480123108 885.914384 1134.007086 0.004790643 2.319606177 2.247279682 S(ph)PPLPAVIR ddPTM_HeLa_CUDC101_4h_R1 4 SPPLPAVIR 9 0 Q9Y6X9-2;Q9Y6X9 Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 1 0 S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR;S(1)PPLPAVIR ;;; 125.97 0.0042605 420669000 3083.39 2419.8 2145.15 2446.81 2610.11 2433.31 2332.52 1716.03 2456.28 2440.72 TRUE FALSE FALSE 2721.959698 2494.35117 2261.123298 2546.601488 2417.567385 2386.898666 2422.486078 1911.375919 2355.031099 2426.202489 1.121901288 1.02808862 0.931959846 1.049624464 0.996440897 0.983800271 0.998468219 0.787805605 0.970665519 1 11.24448425 -3.307365157 0.786402273 1.045274821 7.66E-31 0.535695725 0.05585094 5.213378972 0.769808896 0.009959219 6.818191067 0.000492759 3.307365157 -1.045274821 TEADAEK(ac)TFEEK ddPTM_HeLa_CUDC101_4h_R1 2 TEADAEKTFEEK 12 1 P19338;H7BY16 P19338 NCL Nucleolin 0 1 ; TEADAEK(1)TFEEK;TEADAEK(1)TFEEK 267.02 6.79E-53 5122100 2908.3 1416.82 1208.97 903.65 3762.8 3269.8 3215.5 3098 2970.7 1945.14 FALSE TRUE FALSE 2567.393483 1460.470545 1274.330575 940.5047529 3485.225741 3207.434013 3339.522912 3450.663797 2848.246489 1933.570221 1.327799454 0.755323251 0.659055752 0.486408377 1.802482115 1.658814342 1.727127816 1.784607438 1.473050452 1 10.91705144 -5.730969585 24.99673199 1.042023497 1.736074588 0.640220081 0.286287077 118.7881352 97450.53491 0.044162227 0.088316175 1.86E-06 5.730969585 0.694051091 SHPAMS(ph)PGTPGPTMGR ddPTM_HeLa_CUDC101_4h_R1 2 SHPAMSPGTPGPTMGR 16 0 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GUC6;A0A1B0GUG2;A0A1B0GU09;A0A6I8PTU7 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 1 0 S(0.001)HPAMS(0.967)PGT(0.032)PGPTMGR;SHPAMS(1)PGTPGPTMGR ; 142.72 0.0015262 11995400 4175.7 3989.5 3825.7 3551.1 3920.7 3666.4 3234 2437.92 4139.3 4152.9 TRUE FALSE FALSE 3686.230776 4112.411766 4032.528914 3695.929207 3631.477772 3596.469529 3358.736463 2715.442958 3968.676302 4128.198366 0.892939352 0.996175911 0.976825374 0.895288666 0.879676181 0.871195909 0.813608302 0.657779185 0.961357946 1 12.01129658 -3.300943482 0.551661858 0.955060711 1.03E-17 0.876522329 0.034440507 3.025217091 0.287956437 0.008507696 2.365389509 0.0005001 3.300943482 -0.955060711 VFLQGPAPVGT(ph)PSFNR ddPTM_HeLa_CUDC101_4h_R1 1 VFLQGPAPVGTPSFNR 16 0 Q8IWZ3;Q8IWZ3-4;Q8IWZ3-6;H0Y785;H0Y472;H0Y4P6;H7C0V5 Q8IWZ3 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 0 VFLQGPAPVGT(0.97)PS(0.03)FNR 99.238 0.022451 8429400 1365.3 992.37 1159 1059.3 1300.4 1006.3 927.33 614.27 1359.3 1343.2 TRUE FALSE FALSE 1205.261604 1022.943743 1221.659046 1102.502833 1204.472083 987.1065041 963.0974287 684.1960138 1303.269079 1335.210587 0.90267529 0.766129144 0.914956081 0.825714568 0.902083982 0.739289004 0.721307514 0.512425546 0.97607755 1 10.38285158 -3.300234831 0.295691065 0.972697685 4.04E-28 0.782479338 0.064755031 4.588808473 0.189372724 0.028454759 1.795972139 0.000500916 3.300234831 -0.972697685 DQDMSSPT(ph)TMK ddPTM_HeLa_CUDC101_4h_R1 1 DQDMSSPTTMK 11 0 Q5VW31;O00712;O00712-4;A0A1B0GW37;U3KQE8;A0A0A0MRX8;A0A1B0GU97;A0A2R8Y7V8;Q5VW30;Q5VW27;A0A1B0GWI9;A0A1B0GWJ4;A0A1B0GWB8;A0A1B0GVN4;Q5VW26;O00712-5;O00712-6 Q5VW31 NFIB Nuclear factor 1 B-type;Nuclear factor 1 1 0 DQDMS(0.178)S(0.034)PT(0.77)T(0.018)MK 130.56 0.009447 28125000 4345.8 3406.8 3496.2 3274.9 3484.2 3155.6 2680.6 2161.9 3950 4064 TRUE FALSE FALSE 3836.391912 3511.75947 3685.215147 3408.464577 3227.177508 3095.412188 2783.99164 2408.001957 3787.179328 4039.827147 0.949642589 0.869284586 0.912220997 0.843715449 0.798840492 0.766223919 0.689136326 0.596065591 0.937460735 1 11.98007785 -3.297556021 0.270325401 1.005286446 2.35E-21 0.952719438 0.025953766 1.299667098 0.047815966 0.00939361 0.476497812 0.000504016 3.297556021 -1.005286446 TPSNTPSAEADWS(ph)PGLELHPDYK ddPTM_HeLa_CUDC101_4h_R1 4 TPSNTPSAEADWSPGLELHPDYK 23 0 Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3;A0A2R8Y7R5;A0A2R8Y755;A0A2R8Y586;A0A2R8YF51;A0A2R8Y5D2;A0A2R8YCS7 Q9Y3Z3-3 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 1 0 TPSNT(0.001)PS(0.003)AEADWS(0.996)PGLELHPDYK;T(0.001)PS(0.003)NT(0.013)PS(0.038)AEADWS(0.945)PGLELHPDYK;TPSNTPSAEADWS(0.999)PGLELHPDYK;TPS(0.001)NT(0.003)PS(0.008)AEADWS(0.988)PGLELHPDYK ;;; 118.57 2.18E-07 323800000 26828.5 23273.6 21516.8 20740.1 23769.9 23036.9 20784.2 15959 25292.2 22947.4 TRUE FALSE FALSE 23683.7039 23990.63203 22680.06329 21585.97092 22016.44183 22597.50951 21585.85356 17775.70805 24249.64481 22810.90784 1.038262224 1.051717546 0.994263948 0.946300387 0.965171662 0.9906449 0.946295242 0.779263507 1.063072324 1 14.47743624 -3.296710764 0.79206996 1.014194697 1.32E-18 0.8100387 0.033443817 3.022699803 0.443437709 0.00536392 3.884460931 0.000504998 3.296710764 -1.014194697 SSSNDS(ph)VDEETAESDTSPVLEK ddPTM_HeLa_CUDC101_4h_R1 1 SSSNDSVDEETAESDTSPVLEK 22 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 S(0.03)S(0.03)S(0.123)NDS(0.816)VDEETAESDTSPVLEK 182.21 1.77E-13 18669000 8661.2 8492.2 7969.4 7072.3 7704.9 6474.1 5876.4 4607.9 9452.6 9420.1 TRUE FALSE FALSE 7645.947266 8753.834616 8400.24987 7360.738963 7136.524877 6350.617329 6103.054716 5132.44471 9062.959827 9364.068826 0.816519764 0.934832366 0.897072632 0.786062031 0.762117944 0.678189946 0.651752441 0.548099849 0.967844213 1 13.19291982 -3.295793916 0.233556772 0.97228687 4.53E-17 0.901884817 0.044049679 5.16859026 0.158910346 0.044143057 1.565208367 0.000506065 3.295793916 -0.97228687 LSS(ph)PGPSR ddPTM_HeLa_CUDC101_4h_R1 2 LSSPGPSR 8 0 Q86VQ6;H0YBI6;H0YBQ0 Q86VQ6 TXNRD3 Thioredoxin reductase 3 1 0 LS(0.024)S(0.976)PGPSR;LS(0.067)S(0.933)PGPSR ; 145.46 0.0037924 49735000 11494.7 7486.8 12198.9 11073.9 9336.4 8318.6 8590.7 5256.9 11643 12302.9 TRUE FALSE FALSE 10147.30869 7717.459434 12858.40943 11525.54151 8647.672373 8159.936565 8922.046177 5855.324247 11163.07061 12229.7218 0.829725226 0.631041291 1.051406536 0.942420579 0.707102951 0.667221765 0.72953795 0.478778205 0.912782056 1 13.57810397 -3.293840827 0.261606945 0.955635359 1.33E-33 0.504291669 0.121906616 10.08229477 0.355546908 0.072225 3.391817463 0.000508346 3.293840827 -0.955635359 QHYLS(ph)SEDEPDDNPDVLDSR ddPTM_HeLa_CUDC101_4h_R1 1 QHYLSSEDEPDDNPDVLDSR 20 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 QHYLS(0.5)S(0.5)EDEPDDNPDVLDSR 110.91 8.87E-05 9765100 1180.2 1026.6 1066.1 1302.1 1064.4 1138.5 955.49 1016.7 1022.7 1081.6 TRUE FALSE FALSE 1041.858745 1058.228329 1123.736591 1355.205266 985.8813326 1116.785009 992.3435694 1132.437018 980.5438731 1075.166595 0.969020754 0.984245915 1.045174391 1.260460725 0.916956811 1.038708805 0.922967263 1.053266557 0.911992502 1 10.0703445 -3.29357272 13.95262123 1.004315449 1.027780887 0 0.097621043 0 0 0.011825151 0 0.00050866 3.29357272 0.023465438 YVIS(ph)DEEEEDDD ddPTM_HeLa_CUDC101_4h_R1 3 YVISDEEEEDDD 12 0 Q8WVC0;Q8WVC0-2 Q8WVC0 LEO1 RNA polymerase-associated protein LEO1 1 0 YVIS(1)DEEEEDDD;YVIS(1)DEEEEDDD;YVIS(1)DEEEEDDD ;; 184.24 1.22E-10 67756500 5025.03 4677.48 4580.92 4070.97 4817.61 5078.62 4474.05 4533.97 5117.15 4843.72 TRUE FALSE FALSE 4436.003601 4821.587615 4828.578392 4237.001753 4462.224508 4981.753785 4646.615607 5050.098818 4906.218911 4814.909338 0.921305738 1.001386999 1.002838902 0.879975396 0.926751512 1.034651628 0.965047373 1.048846087 1.018963924 1 12.23329292 -3.289905262 0.972987864 0.961911041 1.455976173 0.170506411 0.047440916 13.07972628 2.295198251 0.007317684 10.63158493 0.000512973 3.289905262 0.494065132 DFQEYVEPGEDFPAS(ph)PQRR ddPTM_HeLa_CUDC101_4h_R1 4 DFQEYVEPGEDFPASPQRR 19 1 Q9Y6G9;E9PHI6;C9JGM7 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR ;;; 155.31 1.46E-05 729820000 10577.5 9718.3 9942 8853.8 11033.6 10736.5 10204.4 10465.5 11381.6 10125 TRUE FALSE FALSE 9337.621484 10017.7093 10479.49459 9214.896233 10219.67331 10531.71915 10597.98713 11656.85022 10912.44563 10064.77605 0.927752534 0.995323617 1.041204945 0.915558994 1.015390035 1.046393789 1.052977938 1.158182771 1.084221405 1 13.29702745 -3.287329799 0.600295944 0.969054391 1.646035894 0.418955402 0.051566075 4.159117454 0.43615668 0.007256893 2.556699427 0.000516024 3.287329799 0.676981504 ASEIDQVVPAAQSS(ph)PINCEK ddPTM_HeLa_CUDC101_4h_R1 1 ASEIDQVVPAAQSSPINCEK 20 0 O94782;C9JWX4;C9JC88 O94782 USP1 Ubiquitin carboxyl-terminal hydrolase 1 1 0 ASEIDQVVPAAQS(0.23)S(0.77)PINCEK 113.23 6.62E-05 10374000 3265.3 2453.5 2360.2 2487.5 2553.8 2454.9 2299.2 1839.3 2816.2 2122.7 TRUE FALSE FALSE 2882.546484 2529.089427 2487.799551 2588.951002 2365.411262 2408.076873 2387.880914 2048.678477 2700.115044 2110.074086 1.366087808 1.198578497 1.179010523 1.226947916 1.121008631 1.141228589 1.131657381 0.970903577 1.279630446 1 11.04307794 -3.285021335 0.94489727 1.180173535 5.46E-09 0.345845123 0.091192208 14.68314031 2.496999982 0.02060468 27.51817441 0.000518775 3.285021335 -1.18017353 SSSSGS(ph)DDYAYTQALLLHQR ddPTM_HeLa_CUDC101_4h_R1 1 SSSSGSDDYAYTQALLLHQR 20 0 F6SS63;Q8N5C8-2;Q8N5C8 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 0 S(0.034)S(0.034)S(0.197)S(0.273)GS(0.462)DDYAYTQALLLHQR 148.01 1.27E-05 24395000 417.88 415.79 389.04 468.25 367.49 635.68 744.49 1206.6 381.49 376.61 TRUE FALSE FALSE 368.8967399 428.5999971 410.0726792 487.3472589 340.3809948 623.5554631 773.2052287 1343.954467 365.7648207 374.369907 0.985380323 1.144856969 1.095367634 1.301780004 0.909210352 1.665613212 2.065350912 3.589910518 0.977014482 1 8.548320661 -3.284786176 0.781258104 1.011377036 12.97994011 0.969883641 0.136361995 0.975656422 0.138859398 0.020202304 14.60823247 0.000519056 3.284786176 11.96856308 up DPAQPMS(ph)PGEATQSGAR ddPTM_HeLa_CUDC101_4h_R1 4 DPAQPMSPGEATQSGAR 17 0 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 DPAQPMS(1)PGEATQSGAR;DPAQPMS(0.996)PGEAT(0.003)QS(0.001)GAR;DPAQPMS(0.996)PGEAT(0.003)QSGAR;DPAQPMS(0.999)PGEAT(0.001)QSGAR ;;; 184.2 6.77E-11 93985400 7622.2 6142.2 6152.5 6009.9 5864.7 5746.22 5359.85 3298.4 5481.18 7387.9 TRUE FALSE FALSE 6728.737271 6331.433902 6485.12276 6255.009699 5432.072765 5636.620427 5566.58121 3673.876523 5255.24344 7343.956442 0.916227829 0.862128466 0.883055722 0.851722059 0.739665711 0.767518227 0.75798124 0.500258485 0.715587501 1 12.84234179 -3.284075662 0.257243079 0.995596964 4.64E-16 0.445943719 0.097156914 3.588733479 0.123445609 0.027164647 1.236203979 0.000519905 3.284075662 -0.995596964 ESGVAGDPWKEET(ph)DTDLEVVLEK ddPTM_HeLa_CUDC101_4h_R1 1 ESGVAGDPWKEETDTDLEVVLEK 23 1 Q1ED39 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 0 ESGVAGDPWKEET(0.52)DT(0.479)DLEVVLEK 71.506 0.0021702 16197000 1244 1083.1 1198.4 1030.3 1124.6 1607.1 1278.3 1688.3 1371.3 1258.3 TRUE FALSE FALSE 1098.180206 1116.469027 1263.189129 1072.320087 1041.640499 1576.447245 1327.604459 1880.489248 1314.774434 1250.815576 0.877971323 0.89259284 1.009892388 0.857296718 0.83276905 1.260335477 1.061391052 1.503410482 1.051133724 1 10.28865337 -3.283788627 0.788335863 0.932871529 3.503210953 0.693932473 0.109312207 3.722551212 0.5341136 0.016247421 12.10852904 0.000520249 3.283788627 2.570339424 QSLGES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 QSLGESPR 8 0 O14639-3;O14639-5;J3QSX6;O14639-4;H0Y7N6;F6XFR5;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639;A0A494C1P1;A0A494C1G0 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 1 0 QSLGES(1)PR;QS(0.003)LGES(0.997)PR ; 97.163 0.021441 185075000 7689.1 6951.8 7303.4 6296.6 6678 6110.7 5953.5 4217.8 7026 7174.5 TRUE FALSE FALSE 6787.795354 7165.976718 7698.243896 6553.402564 6185.377244 5994.148579 6183.128489 4697.937303 6736.385306 7131.825755 0.951761244 1.00478853 1.079421197 0.918895496 0.867292255 0.840478832 0.866976943 0.658728559 0.944552705 1 12.80005574 -3.280924937 0.508048756 0.986445989 7.80E-22 0.777987932 0.051689 3.393415074 0.284808877 0.010483365 2.500836475 0.000523691 3.280924937 -0.986445989 TEDSIRDYEDGMEVDTTPTVAGQFEDADVDH ddPTM_HeLa_CUDC101_4h_R1 7 TEDSIRDYEDGMEVDTTPTVAGQFEDADVDH 31 1 P54105;E9PMI6;J3KN38 P54105 CLNS1A Methylosome subunit pICln 0 0 ;;;;;; ;;;;;; 169.44 8.82E-19 296584000 9701.83 9306.91 8676.39 8574.56 11334.08 9829.15 9066.99 10028.73 9994.15 9957.66 FALSE FALSE TRUE 8564.596194 9593.644866 9145.461888 8924.267619 10497.9875 9641.67534 9416.706842 11170.36009 9582.186907 9898.431395 0.865247821 0.969208603 0.923930421 0.901584025 1.06057082 0.974060935 0.951333243 1.128498005 0.96805105 1 13.2729842 -5.764952527 24.99957004 0.934411852 1.019198801 0.369290856 0.057372937 90.81838644 646270.739 0.0096367 0.017990797 1.72E-06 5.764952527 0.084786948 TEDSLMPEEEFLRR ddPTM_HeLa_CUDC101_4h_R1 2 TEDSLMPEEEFLRR 14 1 Q15459;Q15459-2 Q15459 SF3A1 Splicing factor 3A subunit 1 0 0 ; ; 194.98 2.42E-16 18851600 6719.5 6328.1 5945.1 5275.8 6007 5329.2 5763.9 5802 6558 7231.9 FALSE FALSE TRUE 5931.850396 6523.06126 6266.510089 5490.969928 5563.875578 5227.554389 5986.215554 6462.476228 6287.676464 7188.884337 0.825141999 0.907381584 0.871694382 0.76381392 0.773955362 0.727171859 0.832704391 0.898953986 0.874638702 1 12.81155218 -9.747418198 0.344569542 1.105671326 0.803096865 0.243011296 0.066501297 2.24677758 0.267773753 0.268323644 0.024076812 1.79E-10 9.747418198 -0.30257446 GAANAS(ph)GSSPDAPAKDAR ddPTM_HeLa_CUDC101_4h_R1 1 GAANASGSSPDAPAKDAR 18 1 E7EPJ7;O75962-5;O75962-4;O75962 E7EPJ7 TRIO Triple functional domain protein 1 0 GAANAS(0.441)GS(0.441)S(0.119)PDAPAKDAR 63.674 0.018385 24221000 1364.9 1373.9 1617.6 1955.3 1615.2 1428.3 1071.5 1237 1751.3 1461.6 TRUE FALSE FALSE 1204.908491 1416.228231 1705.052349 2035.045586 1496.049914 1401.057557 1112.828114 1377.81508 1679.110673 1452.906338 0.82930913 0.974755353 1.17354595 1.400672247 1.029694671 0.964313749 0.765932452 0.948316518 1.155690927 1 10.50472599 -3.274518729 14.81044462 0.968892388 1.017169975 0 0.181391882 0 0 0.025280088 0 0.000531473 3.274518729 0.048277587 SILLES(ph)DNEDEKLSR ddPTM_HeLa_CUDC101_4h_R1 2 SILLESDNEDEKLSR 15 1 Q8IWY7;Q6IQ55-2;Q6IQ55 Q8IWY7 TTBK2 Tau-tubulin kinase 2 1 0 S(0.001)ILLES(0.999)DNEDEKLSR;SILLES(1)DNEDEKLSR ; 86.179 0.0081782 26807000 5061.5 5371.7 4842.6 4724.7 6181.4 5302 4611.3 4185.4 5688.6 5576.9 TRUE FALSE FALSE 4468.198643 5537.19571 5104.405604 4917.393688 5725.410437 5200.873184 4789.159386 4661.849018 5454.1135 5543.728351 0.805991629 0.998821616 0.920753197 0.887019236 1.032772545 0.938154407 0.863887817 0.840923062 0.983834913 1 12.43664085 -3.274272989 0.007644578 1.764192401 2.43E-05 0.08036642 0.069618062 37750.21036 34.89717285 3745.519565 4326.224793 0.000531774 3.274272989 -1.764168142 KPSVSEEVQAT(ph)PNK ddPTM_HeLa_CUDC101_4h_R1 1 KPSVSEEVQATPNK 14 1 Q9UKJ3;Q9UKJ3-2 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 1 0 KPSVSEEVQAT(1)PNK 159.34 0.00025111 53555000 4872.1 4676.9 4870.2 4417.4 5916.1 6110.5 7134.2 8608 4493.3 4675.9 TRUE FALSE FALSE 4300.999824 4820.989746 5133.497744 4597.560666 5479.68109 5993.952393 7409.368484 9587.899925 4308.084272 4648.087539 0.925326769 1.037198569 1.104432242 0.989129535 1.178910906 1.28955239 1.594068189 2.062762339 0.926850933 1 12.18242152 -3.273477536 0.592710946 0.968906884 5.042909421 0.980304654 0.048149159 0.876707079 0.0892777 0.009086382 3.206832676 0.000532749 3.273477536 4.074002537 up ASTSDYQVISDRQT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 ASTSDYQVISDRQTPK 16 1 Q8NFH5-2;Q8NFH5;Q8NFH5-3 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 0 ASTSDYQVIS(0.003)DRQT(0.997)PK 70.501 0.036969 79752000 6257.9 5701.4 5539.9 5305.4 5066.7 5480.2 4915.8 3545.7 5707.3 5669.3 TRUE FALSE FALSE 5524.358448 5877.053376 5839.403751 5521.777144 4692.939635 5375.674316 5105.404053 3949.328156 5472.042678 5635.578751 0.980264617 1.042848239 1.036167536 0.97980658 0.832734284 0.953881501 0.905923647 0.70078484 0.970981494 1 12.46034806 -3.270927153 0.617685066 0.995404816 8.92E-16 0.725034378 0.05182378 3.804724284 0.406862347 0.009064457 3.574921947 0.000535887 3.270927153 -0.995404816 TEEEEEEEEEEEEDDEEEEGDDEGQK ddPTM_HeLa_CUDC101_4h_R1 1 TEEEEEEEEEEEEDDEEEEGDDEGQK 26 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 0 0 176.7 9.78E-14 5563000 4107.4 2895.1 2691.2 2344.8 2615.4 3130.4 2287.3 2275.7 3255.9 2918.2 FALSE FALSE TRUE 3625.936798 2984.294599 2836.694412 2440.431079 2422.467153 3070.692836 2375.521927 2534.756489 3121.690424 2900.842417 1.249959935 1.028768258 0.977886422 0.841283575 0.835090917 1.058552101 0.818907609 0.873800133 1.07613237 1 11.50225621 -6.739058062 2.483493651 1.117860861 0.890868672 0.543838655 0.087642026 0.186910209 2.367019701 0.018380028 0.026169686 1.82E-07 6.739058062 -0.226992189 EEEEQQEGGFAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 EEEEQQEGGFASPR 14 0 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2;A0A087WWG9 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 1 0 EEEEQQEGGFAS(1)PR 94.487 0.0022588 0 570.8 699.27 425.52 343.7 570.75 542.66 421.88 228.07 723.34 629.43 TRUE FALSE FALSE 503.8916893 720.8136799 448.5248983 357.7175716 528.6469096 532.3096646 438.1520529 254.0325669 693.523619 625.6861224 0.805342601 1.152037186 0.716852879 0.571720482 0.844907519 0.850761501 0.700274526 0.406006395 1.108420971 1 9.289295295 -3.270676423 0.237162642 0.966118437 8.20E-22 0.489314219 0.157449593 13.74125495 0.426028629 0.11169155 4.212220927 0.000536196 3.270676423 -0.966118437 ATDS(ph)FSGR ddPTM_HeLa_CUDC101_4h_R1 1 ATDSFSGR 8 0 Q9HBH9;K7EK27;Q9HBH9-2 Q9HBH9 MKNK2 MAP kinase-interacting serine/threonine-protein kinase 2 1 0 ATDS(0.978)FS(0.022)GR 120.45 0.0073758 31192000 2990.9 2341 4188.3 4478.7 3889 2515 2588.8 1505.8 2508 2750.9 TRUE FALSE FALSE 2640.311236 2413.123435 4414.732167 4661.360745 3602.116218 2467.030565 2688.650883 1677.214185 2404.619178 2734.537524 0.965542148 0.882461262 1.614434663 1.704624896 1.317267065 0.902174698 0.983219597 0.613344732 0.879351319 1 11.41708114 -3.261968532 13.32621543 1.05994045 1.098915825 0 0.331079734 0 0 0.045554135 0 0.000547056 3.261968532 0.038975375 TEEK(ac)EIAAR ddPTM_HeLa_CUDC101_4h_R1 2 TEEKEIAAR 9 1 Q04727-4;Q04727;Q04727-3;H7C4W5;H7C4P7;Q5JSY7;H7C4E4;Q04727-2 Q04727-4 TLE4 Transducin-like enhancer protein 4 0 1 ; TEEK(1)EIAAR;TEEK(1)EIAAR 102.06 0.010134 2071150 547.25 590.38 374.3 506.281 242.11 633.71 551.31 440.62 569.99 359.46 FALSE TRUE FALSE 483.1021846 608.568908 394.5357902 526.9293275 224.2500277 621.6230376 572.5742114 490.7783998 546.4947709 357.3219159 1.352008268 1.703139049 1.104146632 1.474662773 0.627585428 1.739672295 1.602404403 1.3734909 1.529418562 1 8.481080592 -8.993333933 0.778300039 0.995635427 1.371030441 0 0.346417063 0.930337834 1.023556518 0.204066256 0.061712105 1.02E-09 8.993333933 0.375395014 NSSS(ph)PVS(ph)PASVPGQR ddPTM_HeLa_CUDC101_4h_R1 2 NSSSPVSPASVPGQR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 0 NS(0.011)S(0.264)S(0.725)PVS(0.999)PASVPGQR;NS(0.009)S(0.111)S(0.882)PVS(0.993)PAS(0.005)VPGQR ; 114.06 0.017132 122560000 9857.6 8931.1 8986.7 8225 8686.5 8353.2 7188.3 4930 8564.5 10197.1 TRUE FALSE FALSE 8702.107071 9206.256605 9472.548185 8560.451051 8045.714201 8193.876627 7465.555139 5491.211272 8211.467685 10136.4472 0.85849676 0.908233075 0.934503777 0.844521841 0.793741046 0.808357847 0.736506095 0.541729382 0.810093273 1 13.30726446 -3.261912728 0.345625283 0.949935063 1.28E-31 0.735623852 0.060963397 3.723602049 0.184596401 0.017478663 1.70369263 0.000547126 3.261912728 -0.949935063 LGSQPIRAS(ph)NPDLR ddPTM_HeLa_CUDC101_4h_R1 2 LGSQPIRASNPDLR 14 1 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 0 LGSQPIRAS(1)NPDLR;LGSQPIRAS(1)NPDLR ; 118.71 0.00086553 64055000 6233.1 5398.9 5074.6 5136.5 6700.1 5917.2 5934.1 6786.9 5777.3 6013.1 TRUE FALSE FALSE 5502.465467 5565.23371 5348.948226 5345.988672 6205.846971 5804.339269 6162.980225 7559.493262 5539.157249 5977.333814 0.920555157 0.9310562 0.894871927 0.894376797 1.038229947 0.971058243 1.031058398 1.264693172 0.926693643 1 12.5452864 -3.259283049 1.050957909 0.952600741 3.158855042 0.836397539 0.042489397 4.025741601 0.703685581 0.007322375 16.33526091 0.000550449 3.259283049 2.206254301 IEFQVHALEDES(ph)DGETSDTEK ddPTM_HeLa_CUDC101_4h_R1 1 IEFQVHALEDESDGETSDTEK 21 0 H3BSS6;Q9H2Y7;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 0 IEFQVHALEDES(0.97)DGET(0.017)S(0.005)DT(0.007)EK 94.73 0.00022996 0 1100.2 1323.1 1163.4 1016.5 1100 1016.8 1021.5 783.62 1455.8 1110 TRUE FALSE FALSE 971.2362238 1363.863143 1226.296923 1057.957264 1018.855192 997.4062341 1060.899597 872.8241333 1395.791308 1103.397671 0.880223196 1.23605766 1.111382556 0.958817743 0.923379864 0.903940855 0.961484355 0.791033148 1.264993887 1 10.10773712 -3.258901883 0.901426038 0.976568915 2.22E-13 0.13224616 0.136444654 15.08469539 2.366238935 0.0177256 22.258542 0.000550932 3.258901883 -0.976568915 MYFPDVEFDIKS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 MYFPDVEFDIKSPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MYFPDVEFDIKS(1)PK;MYFPDVEFDIKS(1)PK ; 88.19 0.0093645 406430000 13812.5 10490.7 10809.1 11287.1 12018 10614.2 10441.3 7121.8 11337.1 11957.7 TRUE FALSE FALSE 12193.41969 10813.90603 11393.47264 11747.43673 11131.45608 10411.75182 10844.02444 7932.516925 10869.77994 11886.57507 1.025814385 0.909757939 0.958516021 0.988294497 0.936472955 0.875925299 0.912291756 0.66735093 0.914458528 1 13.53704546 -3.258572059 0.541097848 1.003567973 9.03E-22 0.702963646 0.051696317 2.944152513 0.263382522 0.008207634 2.390281464 0.000551351 3.258572059 -1.003567973 S(ph)VPNTPLRPNQQSVVNSSFSELFVK ddPTM_HeLa_CUDC101_4h_R1 2 SVPNTPLRPNQQSVVNSSFSELFVK 25 1 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 0 S(0.5)VPNT(0.5)PLRPNQQSVVNSSFSELFVK;S(0.879)VPNT(0.121)PLRPNQQSVVNSSFSELFVK ; 108.14 1.46E-07 122227000 2717.7 1904.26 2071.6 1798.8 2369.1 2051.9 1557.92 1312.51 2391.2 2368.1 TRUE FALSE FALSE 2399.135326 1962.927993 2183.596962 1872.162839 2194.336213 2012.763426 1618.009496 1461.920833 2292.633724 2354.014436 1.019167635 0.833864042 0.927605595 0.795306439 0.932167696 0.855034445 0.687340516 0.621033079 0.973925091 1 11.20090745 -3.258563212 0.305434443 1.018701894 2.93E-18 0.749567534 0.063160605 4.364601789 0.184050885 0.02592387 1.864603062 0.000551362 3.258563212 -1.018701894 RGS(ph)GSALGGPLDPQFVGPSDTSLGAAPGHR ddPTM_HeLa_CUDC101_4h_R1 1 RGSGSALGGPLDPQFVGPSDTSLGAAPGHR 30 1 P98174 P98174 FGD1 "FYVE, RhoGEF and PH domain-containing protein 1" 1 0 RGS(0.5)GS(0.5)ALGGPLDPQFVGPSDTSLGAAPGHR 72.848 5.86E-05 7749000 578.97 596.92 676.3 467.22 685.16 934.86 737.44 965.45 694.6 556.46 TRUE FALSE FALSE 511.1040143 615.3103977 712.8628237 486.2752511 634.6171118 917.0291031 765.8833078 1075.352926 665.968294 553.1501512 0.923987842 1.112374997 1.288732946 0.879101723 1.147278204 1.65783034 1.38458483 1.944052484 1.20395573 1 9.111527339 -3.256244769 0.438780556 0.963602312 3.81754646 0.689921907 0.176568146 3.447238433 0.23372157 0.035403506 6.232250546 0.000554313 3.256244769 2.853944147 ADYDTLS(ph)LR ddPTM_HeLa_CUDC101_4h_R1 2 ADYDTLSLR 9 0 Q9Y446;Q9Y446-2;E9PKC4;E9PK71;E9PJR7;E9PRW6;E9PQ15 Q9Y446 PKP3 Plakophilin-3 1 0 ADYDTLS(1)LR;ADYDTLS(1)LR ; 109.16 0.010642 16969300 4762.4 3245.4 4084.2 3876.3 5364.8 7035.9 9488.6 14654.6 3201.5 3116.6 TRUE FALSE FALSE 4204.158691 3345.386927 4305.004206 4034.392269 4969.049392 6901.70193 9854.57848 16322.82043 3069.532815 3098.062325 1.357028443 1.079832029 1.3895796 1.302230829 1.603921701 2.22774793 3.180884517 5.268719192 0.990791176 1 11.59715045 -3.255114821 0.678010074 1.158847736 18.51719895 0.991739442 0.116357329 0.665768493 0.078213178 0.023269796 12.26737863 0.000555757 3.255114821 17.35835122 up S(ph)MGETESGDAFLDLK ddPTM_HeLa_CUDC101_4h_R1 1 SMGETESGDAFLDLK 15 0 B1AKL4;Q9NRA8;Q9NRA8-3;Q9NRA8-2;B1AKL5;B1AKL6 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 0 S(1)MGETESGDAFLDLK 112.62 0.0040949 3597800 1457.1 1283.3 1199.7 903.91 1310.1 1318.6 916.75 627.42 1396 1489.3 TRUE FALSE FALSE 1286.300947 1322.836952 1264.559411 940.7753568 1213.456533 1293.449902 952.1093546 698.8429567 1338.456289 1480.441577 0.868863025 0.893542151 0.854177179 0.635469424 0.819658507 0.873691959 0.643125247 0.472050345 0.90409261 1 10.53181184 -3.247434789 0.212510137 1.000226411 1.58E-16 0.653434281 0.089703758 9.058733062 0.244755251 0.087100425 2.56263789 0.000565673 3.247434789 -1.000226411 TEESPASDEAGEK ddPTM_HeLa_CUDC101_4h_R1 1 TEESPASDEAGEK 13 0 P05114;A6NEL0;A6NL93 P05114 HMGN1 Non-histone chromosomal protein HMG-14 0 0 178.53 5.83E-07 4573700 1400.1 1245.9 1486 1189.9 1124.2 1264.4 1100.9 876.88 1192.9 2193.9 FALSE FALSE TRUE 1235.9824 1284.284702 1566.337655 1238.429265 1041.270006 1240.283677 1143.362082 976.7004747 1143.728157 2180.850585 0.566743274 0.588891651 0.718223277 0.567865251 0.477460498 0.568715567 0.52427346 0.447852999 0.524441319 1 11.09067522 -13.52287875 0.20175928 3.169937157 0.476010397 0 0.164781063 11.64098237 0.141919502 9.896266614 0.064248007 3.00E-14 13.52287875 -2.69392676 S(ph)PTKAPHLQLIEGK ddPTM_HeLa_CUDC101_4h_R1 2 SPTKAPHLQLIEGK 14 1 O43491;O43491-4;E9PHY5;E9PK52;O43491-3;O43491-2;E9PII3;A0A2R8Y5B3;H0Y5B0 O43491 EPB41L2 Band 4.1-like protein 2 1 0 S(0.529)PT(0.471)KAPHLQLIEGK;S(0.5)PT(0.5)KAPHLQLIEGK ; 66.004 0.026044 78498000 17386.6 16273.5 14559.3 15162.6 15788.9 14460.1 13210.3 11020.9 16984.8 16420.8 TRUE FALSE FALSE 15348.5691 16774.86725 15346.4198 15780.99637 14624.1843 14184.29768 13719.8257 12275.47471 16284.67936 16323.12835 0.940295804 1.027674774 0.940164132 0.966787495 0.895917988 0.868969316 0.840514477 0.75202954 0.997644508 1 13.99462996 -3.24717148 0.438178625 0.97989755 0.27632372 0.886597383 0.027078006 2.696305906 0.181340649 0.006743477 1.202053192 0.000566016 3.24717148 -0.703573831 TEFDREIDR ddPTM_HeLa_CUDC101_4h_R1 1 TEFDREIDR 9 1 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 0 93.598 0.0026518 0 676.18 480.15 862.72 576.05 803.64 805.96 570.64 621.27 816.17 847.09 FALSE FALSE TRUE 596.9192054 494.9428524 909.3612528 599.5438089 744.3570783 790.5876558 592.649776 691.9928655 782.5271271 842.051471 0.708886839 0.587782184 1.079935472 0.712003755 0.883980498 0.938882815 0.703816567 0.821794023 0.929310326 1 9.717764612 -9.482638663 1.259771196 0.998622403 0.796870645 0.178779535 0.134048789 0.509851858 1.463271758 0.08680274 0.02185098 3.29E-10 9.482638663 -0.201751757 TS(ph)PYILR ddPTM_HeLa_CUDC101_4h_R1 2 TSPYILR 7 0 P49454 P49454 CENPF Centromere protein F 1 0 T(0.18)S(0.82)PY(0.001)ILR;T(0.016)S(0.984)PYILR ; 139.97 0.010184 137886700 8168.7 6803.4 6614.1 6287.8 7603 6563.5 5379.4 3731.7 7935.9 8299.5 TRUE FALSE FALSE 7211.177369 7013.00469 6971.678253 6544.243662 7042.141837 6438.312173 5586.88526 4156.501644 7608.778843 8250.134205 0.874067887 0.850047347 0.845038163 0.793228752 0.853579065 0.780388781 0.677187197 0.503810185 0.922261221 1 13.01020187 -3.246005402 0.255728685 0.976795238 9.52E-28 0.85998185 0.048800946 4.387477742 0.147454085 0.03170581 1.478931395 0.000567538 3.246005402 -0.976795238 S(ph)DVPLR ddPTM_HeLa_CUDC101_4h_R1 2 SDVPLR 6 0 Q96RD9-4;Q96RD9-3;Q96RD9 Q96RD9-4 FCRL5 Fc receptor-like protein 5 1 0 S(1)DVPLR;S(1)DVPLR ; 101.28 0.026468 117850000 14053 12950.3 11891.5 12018.5 13770.9 12721.6 11865.9 11092.7 12421.8 12315.1 TRUE FALSE FALSE 12405.72864 13349.28339 12534.39046 12508.66638 12755.04814 12478.95668 12323.57174 12355.44813 11909.76815 12241.84924 1.013386818 1.090462979 1.023896816 1.021795493 1.041921682 1.019368596 1.006675666 1.009279553 0.97287329 1 13.57953389 -3.242507294 16.77041454 1.016957599 0.799609609 0 0.029175374 0 0 0.003661639 0 0.000572127 3.242507294 -0.217347989 TEFMNPHLISVRINERCQRGTEDNK ddPTM_HeLa_CUDC101_4h_R1 1 TEFMNPHLISVRINERCQRGTEDNK 25 3 F5GZ56;Q9UG01-3;Q9UG01-2;Q9UG01 F5GZ56 IFT172 Intraflagellar transport protein 172 homolog 0 0 39.647 0.040306 21705000 1213.2 1012.6 869.25 685.66 1468.5 1187.1 942.81 667.3 1297.1 1201.3 FALSE FALSE TRUE 1070.990535 1043.797006 916.2442843 713.6241785 1360.171681 1164.458045 979.1744975 743.2627347 1243.632989 1194.154614 0.896860861 0.874088659 0.767274416 0.597597807 1.139024767 0.975131722 0.819972963 0.622417504 1.04143381 1 10.22177393 -8.131015031 0.756201151 0.987442462 0.834493738 0.194698674 0.149864996 0.857886386 1.070482866 0.056696704 0.037023756 7.40E-09 8.131015031 -0.152948723 SESSTSAFS(ph)TPTR ddPTM_HeLa_CUDC101_4h_R1 2 SESSTSAFSTPTR 13 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 SESS(0.002)T(0.009)S(0.006)AFS(0.458)T(0.458)PT(0.066)R;SESST(0.001)S(0.011)AFS(0.373)T(0.373)PT(0.241)R ; 128.21 0.0013474 34742000 4017.8 3310.8 3147.9 3159.8 3248.4 3360.9 2824.5 1903.69 3805.7 3677.7 TRUE FALSE FALSE 3546.839575 3412.801824 3318.084996 3288.670302 3008.772004 3296.796432 2933.441911 2120.398375 3648.827435 3655.824877 0.970188588 0.933524427 0.907615957 0.899569977 0.823007695 0.901792767 0.802402196 0.580005456 0.998085947 1 11.83598125 -3.24060446 0.388781542 0.988433367 3.15E-22 0.857724063 0.044662756 2.900123367 0.16581055 0.0117822 1.584357603 0.00057464 3.24060446 -0.988433367 VPQALNFS(ph)PEESDSTFSK ddPTM_HeLa_CUDC101_4h_R1 4 VPQALNFSPEESDSTFSK 18 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 0 VPQALNFS(1)PEESDSTFSK;VPQALNFS(1)PEESDSTFSK;VPQALNFS(0.996)PEES(0.003)DS(0.001)TFSK;VPQALNFS(0.994)PEES(0.004)DS(0.001)TFSK ;;; 142.88 6.32E-05 40569500 6503.87 5555.83 4747.44 4880.28 5657.22 4726.98 4177.56 3153.64 6104.44 6502.18 TRUE FALSE FALSE 5741.496218 5726.998537 5004.100967 5079.318913 5239.898151 4636.820732 4338.689889 3512.63763 5852.812399 6463.504744 0.888294578 0.886051572 0.774208601 0.785845932 0.810689921 0.717384904 0.671259643 0.543457113 0.905516841 1 12.65810094 -3.240007844 0.192985975 1.023952076 1.44E-18 0.889099 0.041660289 3.863738635 0.093324126 0.043144568 1.012664337 0.00057543 3.240007844 -1.023952076 GYYSPYS(ph)VSGSGSTAGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 GY(0.002)Y(0.076)S(0.183)PY(0.016)S(0.454)VS(0.182)GS(0.007)GS(0.078)T(0.002)AGS(1)R 108.96 0.0052368 188510000 3851.5 2659.9 3577.1 3180.5 3731.8 4603.6 4554.5 5729.6 2591.5 3131.8 TRUE FALSE FALSE 3400.033008 2741.848366 3770.488846 3310.214537 3456.512549 4515.794 4730.168591 6381.834504 2484.677273 3113.171914 1.092144315 0.88072501 1.211140583 1.063293203 1.110286436 1.450544372 1.519404877 2.049946061 0.798117592 1 11.60416953 -3.23943457 0.60269298 1.032357575 4.925564077 0.891161673 0.115517088 1.655917865 0.166559763 0.014895333 5.961327525 0.00057619 3.23943457 3.893206501 up TEGDEEAEEEQEENLEASGDYK ddPTM_HeLa_CUDC101_4h_R1 3 TEGDEEAEEEQEENLEASGDYK 22 0 P12956;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 0 ;; ;; 172.55 1.21E-09 27411000 7608.1 6168.03 6000.4 5637.24 6743.15 5988.6 5955.23 5689.79 6695.9 6885.7 FALSE FALSE TRUE 6716.290051 6358.059693 6324.799774 5867.151013 6245.721259 5874.377433 6184.925216 6337.492695 6419.892168 6844.74355 0.981233263 0.9288967 0.924037508 0.857176163 0.912484334 0.858231925 0.903602183 0.925891912 0.93793027 1 12.74078077 -7.074662629 1.393069631 0.993553626 0.891863719 0.580074524 0.027948787 0.112177022 0.421433041 0.003930929 0.00504791 8.42E-08 7.074662629 -0.101689907 IVRGDQPAASGDS(ph)DDDEPPPLPR ddPTM_HeLa_CUDC101_4h_R1 2 IVRGDQPAASGDSDDDEPPPLPR 23 1 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 IVRGDQPAAS(0.002)GDS(0.998)DDDEPPPLPR;IVRGDQPAAS(0.023)GDS(0.977)DDDEPPPLPR ; 188.53 3.36E-14 46883000 1250.12 1657.54 1574.85 1270.92 2279.1 1769.93 1835.2 2241.5 1311.91 1617.52 TRUE FALSE FALSE 1103.582829 1708.606843 1659.991155 1322.753611 2110.975334 1736.171534 1905.984279 2496.6633 1257.832515 1607.898919 0.686350874 1.062633243 1.032397705 0.82265968 1.312878135 1.079776542 1.185388121 1.552748913 0.782283326 1 10.650961 -3.238331111 0.43074848 0.863947806 2.814076275 0.63897035 0.147132139 5.634228899 0.368238737 0.039385462 6.837737555 0.000577655 3.238331111 1.950128468 VISFIENTST(ph)PVDR ddPTM_HeLa_CUDC101_4h_R1 1 VISFIENTSTPVDR 14 0 E9PGE5;Q9NUY8-2;Q9NUY8 E9PGE5 TBC1D23 TBC1 domain family member 23 1 0 VISFIENT(0.01)S(0.072)T(0.918)PVDR 114.21 0.012336 7081100 2078.7 1904.3 1960.7 1609.3 1674.5 1693.2 1908.2 662.02 2100.1 2223.5 TRUE FALSE FALSE 1835.037937 1962.969226 2066.701373 1674.93421 1550.975471 1660.905031 1981.799913 737.3816808 2013.532989 2210.274523 0.830230778 0.888111049 0.935042842 0.757794651 0.70171169 0.751447394 0.896630664 0.333615428 0.910987738 1 11.11000985 -3.238152472 0.262042856 0.959004449 4.18E-29 0.5404656 0.121241944 9.74644066 0.336299241 0.066292604 3.315529141 0.000577893 3.238152472 -0.959004449 SLSDS(ph)ESDDSK ddPTM_HeLa_CUDC101_4h_R1 2 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 0 S(0.201)LS(0.107)DS(0.692)ESDDSK;S(0.126)LS(0.416)DS(0.427)ES(0.019)DDS(0.012)K ; 184.98 1.03E-10 96366000 3750.8 2978.2 3670.1 3398.2 3013 2873.5 2788.1 1913.58 3588.1 3796.8 TRUE FALSE FALSE 3311.13691 3069.954812 3868.516707 3536.793284 2790.736993 2818.692775 2895.637951 2131.414212 3440.196999 3774.216465 0.877304453 0.813401892 1.024985383 0.937093385 0.739421551 0.746828594 0.767215653 0.564730251 0.911499653 1 11.88196145 -3.23767272 0.335609477 0.959118681 9.75E-19 0.692881659 0.073582268 5.475837638 0.257897723 0.026237377 2.455928316 0.000578532 3.23767272 -0.959118681 TEK(ac)EESTEVLK ddPTM_HeLa_CUDC101_4h_R1 1 TEKEESTEVLK 11 1 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;F8W7E0;P20810-2;E9PCH5;P20810-3;H0YA91;H0Y7F0;E7EVY3;H0Y9H6 P20810-6;E7EVY3 CAST Calpastatin 0 1 TEK(1)EESTEVLK 147.28 0.00013996 1159800 0 0 0 0 180 163.33 0 69.987 0 0 FALSE TRUE FALSE 0 0 0 0 166.7217586 160.2147524 0 77.95403718 0 0 0 GPPS(ph)PGPAAQPPAPPR ddPTM_HeLa_CUDC101_4h_R1 1 GPPSPGPAAQPPAPPR 16 0 H9KV50;Q9NZV5-2;Q9NZV5 H9KV50 SEPN1 Selenoprotein N 1 0 GPPS(1)PGPAAQPPAPPR 108.06 0.0020014 19800000 1917.2 1547.3 1960.9 2037.4 1695.6 1732.3 1734.4 1139.1 1816.9 1547.9 TRUE FALSE FALSE 1692.468722 1594.970479 2066.912185 2120.493978 1570.518966 1699.259264 1801.296389 1268.77054 1742.006613 1538.693022 1.099939168 1.036574844 1.343290803 1.378113729 1.020683752 1.104352356 1.170666509 0.824576781 1.132133953 1 10.58748972 -3.236974882 14.03481655 1.08573999 1.109518861 0 0.156184144 0 0 0.020860918 0 0.000579462 3.236974882 0.023778871 SADCSVPS(ph)PALDK ddPTM_HeLa_CUDC101_4h_R1 1 SADCSVPSPALDK 13 0 Q68DC6;O43439-2;O43439-5;O43439;O43439-4 Q68DC6 DKFZp313F2116;CBFA2T2 Protein CBFA2T2 1 0 SADCS(0.006)VPS(0.994)PALDK 148.41 0.00041715 10818000 4030 3339.5 3678.5 3553 3759 3410.2 2997.9 2734.9 3105.4 2962.5 TRUE FALSE FALSE 3557.609509 3442.386037 3877.370837 3697.906697 3481.706059 3345.156117 3113.530007 3046.229961 2977.394098 2944.878918 1.20806648 1.168939753 1.316648645 1.255707552 1.182291753 1.135923143 1.057269278 1.034416031 1.011041262 1 11.5239926 -3.233156807 14.01869783 1.129930691 1.143469702 0 0.103202386 0 0 0.01581893 0 0.000584579 3.233156807 0.013539012 MGLS(ph)MER ddPTM_HeLa_CUDC101_4h_R1 1 MGLSMER 7 0 A0A087X0X3;P52272-2;P52272;M0QZM1;M0R2I7 A0A087X0X3 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 0 MGLS(1)MER 85.161 0.038946 15362000 5024.8 3871.5 3423.9 3497 4278.7 3457.1 3682.9 2055 4003 4222.2 TRUE FALSE FALSE 4435.800561 3990.776326 3609.006391 3639.622775 3963.068825 3391.161577 3824.950687 2288.932893 3837.994646 4197.086167 1.05687622 0.950844507 0.859883797 0.867178474 0.944242903 0.807979975 0.911334801 0.545362378 0.914442662 1 12.03517237 -3.230848058 0.357171417 1.026313948 1.90E-11 0.583329483 0.085245052 5.099625387 0.259421362 0.023801145 2.629673074 0.000587695 3.230848058 -1.026313948 TELADK(ac)VTK ddPTM_HeLa_CUDC101_4h_R1 1 TELADKVTK 9 1 P35579 P35579 MYH9 Myosin-9 0 1 TELADK(1)VTK 132.78 0.0026218 902480 344.2 306.56 169.31 191.5 613.77 493.83 520.68 697.6 441.89 577.37 FALSE TRUE FALSE 303.8533978 316.0047502 178.4634107 199.3101977 568.4934099 484.4110155 540.762802 777.0119642 423.6751072 573.9357776 0.529420555 0.550592527 0.310946656 0.347269164 0.990517462 0.844016063 0.942200893 1.353830855 0.738192536 1 9.164745501 -4.109267265 1.059079376 0.700684175 1.825606519 0.486105574 0.223624202 2.102726317 1.504080437 0.04273721 2.85931443 7.78E-05 4.109267265 1.124922344 YLGS(ph)PITTVPK ddPTM_HeLa_CUDC101_4h_R1 1 YLGSPITTVPK 11 0 D6RJC2;P30307-4;P30307-3;P30307-2;P30307;A0A3B3IT42 D6RJC2 CDC25C M-phase inducer phosphatase 3 1 0 YLGS(0.981)PIT(0.018)TVPK 135.6 0.0016495 43918000 3930.7 3489.7 3386.8 3198.6 3579.4 3484 2692 2195.2 3889.2 3844.9 TRUE FALSE FALSE 3469.949305 3597.213521 3569.900653 3329.052734 3315.354793 3417.548505 2795.831342 2445.092695 3728.88553 3822.030364 0.907881145 0.941178687 0.93403252 0.87101682 0.867432877 0.894170946 0.73150422 0.639736596 0.975629489 1 11.90012352 -3.230694878 0.430192534 0.961107946 4.13E-20 0.902901318 0.032838909 2.737966981 0.177722448 0.009339725 1.637684209 0.000587902 3.230694878 -0.961107946 ALLSS(ph)PEGEEK ddPTM_HeLa_CUDC101_4h_R1 2 ALLSSPEGEEK 11 0 A0A499FJI4;O75592-2;O75592;H7C3U4 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 ALLS(0.011)S(0.989)PEGEEK;ALLS(0.07)S(0.93)PEGEEK ; 151.1 0.00058436 28253000 13144.4 10896.4 10276 10240.8 11161.3 10888.2 9065.8 6423.3 11862 12113 TRUE FALSE FALSE 11603.63336 11232.10517 10831.55164 10658.46409 10337.95314 10680.52573 9415.470943 7154.502508 11373.04334 12040.95134 0.963680778 0.932825393 0.899559457 0.88518455 0.858566142 0.887016767 0.781954073 0.594180834 0.944530297 1 13.55566176 -3.229568084 0.385924909 0.985865777 1.72E-22 0.883030444 0.037512727 2.454430831 0.138047333 0.00989348 1.328728459 0.00058943 3.229568084 -0.985865777 TELSQSDMFDQR ddPTM_HeLa_CUDC101_4h_R1 3 TELSQSDMFDQR 12 0 B7Z7P8;P62495-2;P62495 B7Z7P8 ETF1 Eukaryotic peptide chain release factor subunit 1 0 0 ;; ;; 179.42 6.00E-07 58237000 3359.69 3419.72 3004.33 3091.19 3453.61 2949.67 3121.91 2881.92 3347.55 3859.68 FALSE FALSE TRUE 2965.872231 3525.07752 3166.753167 3217.262089 3198.844071 2893.409959 3242.323114 3209.986124 3209.562572 3836.722452 0.773022357 0.918773136 0.825379789 0.83854439 0.833743934 0.754135853 0.845076274 0.836647989 0.836537595 1 11.90565869 -9.422346611 0.993789436 1.006712879 0.824708088 0.036068474 0.064817537 0.259761762 0.430714077 0.035511049 0.007713523 3.78E-10 9.422346611 -0.182004792 EVS(ph)DSEAGGGPQGERK ddPTM_HeLa_CUDC101_4h_R1 2 EVSDSEAGGGPQGERK 16 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 EVS(0.997)DS(0.003)EAGGGPQGERK;EVS(0.97)DS(0.03)EAGGGPQGERK ; 88.486 0.0052514 46590000 5260.8 4917 4610 4540.4 4403.3 4551.9 3876.9 3566.7 5666.7 3851.1 TRUE FALSE FALSE 4644.136999 5068.486942 4859.230544 4725.577137 4078.477332 4465.080091 4026.433332 3972.718711 5433.116228 3828.193486 1.213140615 1.323989229 1.269327311 1.234414393 1.0653791 1.166367402 1.051784176 1.037752853 1.419237624 1 11.90244803 -3.227105581 13.82716325 1.131176853 0.451250558 0 0.139435843 0 0 0.016929084 0 0.000592781 3.227105581 -0.679926295 QCEGITS(ph)PEGSK ddPTM_HeLa_CUDC101_4h_R1 2 QCEGITSPEGSK 12 0 Q9Y570-4;Q9Y570;Q9Y570-2 Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 1 0 QCEGIT(0.073)S(0.855)PEGS(0.073)K;QCEGIT(0.078)S(0.921)PEGSK ; 193.98 4.72E-16 71238000 11224.1 9317.9 9356.5 10082.3 9429.5 9803.9 7795.2 7462.6 10497.3 7776.8 TRUE FALSE FALSE 9908.428013 9604.973455 9862.340692 10493.49977 8733.904571 9616.906942 8095.863475 8312.112219 10064.59685 7730.543248 1.281724673 1.242470697 1.275762954 1.357407809 1.129791826 1.244014377 1.047256734 1.075230026 1.301926207 1 12.91635408 -3.224287709 14.02671747 1.163805864 1.172173415 0 0.120431904 0 0 0.018520503 0 0.00059664 3.224287709 0.008367551 ALASNTSFFSGCS(ph)PIEEEAH ddPTM_HeLa_CUDC101_4h_R1 3 ALASNTSFFSGCSPIEEEAH 20 0 O95239;Q2VIQ3 O95239 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B 1 0 ALASNTSFFS(0.16)GCS(0.84)PIEEEAH;ALASNTSFFS(0.02)GCS(0.98)PIEEEAH;ALASNTSFFS(0.011)GCS(0.989)PIEEEAH ;; 173.19 5.92E-08 178822800 3184.39 3420.22 2848.28 2914.29 3192.43 2692.7 2389.15 2571.57 4055.82 2552.77 TRUE FALSE FALSE 2811.120631 3525.592924 3002.266632 3033.147343 2956.930799 2641.341234 2481.300316 2864.307134 3888.637383 2537.586011 1.107793241 1.389349133 1.183119161 1.195288487 1.165253429 1.040887372 0.977819197 1.128752729 1.532415992 1 11.30924101 -3.222455091 14.06210923 1.095834431 1.098307306 0 0.180676703 0 0 0.017323135 0 0.000599163 3.222455091 0.002472875 GAILSEEELAAMSPT(ph)AAAVAK ddPTM_HeLa_CUDC101_4h_R1 2 GAILSEEELAAMSPTAAAVAK 21 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 GAILS(0.002)EEELAAMS(0.424)PT(0.573)AAAVAK;GAILSEEELAAMS(0.326)PT(0.674)AAAVAK ; 195.77 7.24E-27 8870300 7910.9 7275.9 6874.3 7189.3 7963.8 7157.9 6536.9 5265.8 8099.3 7891.4 TRUE FALSE FALSE 6983.596294 7500.061855 7245.945452 7482.510729 7376.32634 7021.374983 6789.030423 5865.237387 7765.443426 7844.461602 0.890258204 0.956096446 0.923702074 0.953859055 0.940322831 0.895074173 0.865455243 0.747691516 0.989926883 1 12.93745872 -3.220502809 0.739256856 0.947613879 8.27E-13 0.817235383 0.029679039 4.375912994 0.541613637 0.006591469 4.95039617 0.000601862 3.220502809 -0.947613879 AAEDDEDDDVDTKKQKT(ph)DEDD ddPTM_HeLa_CUDC101_4h_R1 1 AAEDDEDDDVDTKKQKTDEDD 21 3 B8ZZQ6;P06454-2;P06454;B8ZZA1;B8ZZW7;H7C2N1 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 1 0 AAEDDEDDDVDT(0.18)KKQKT(0.82)DEDD 55.437 0.015257 42836000 2956.1 4591 4364.7 4100.2 6728.5 4960.9 5130.9 7415.8 4263.5 1933.8 TRUE FALSE FALSE 2609.590439 4732.443268 4600.668884 4267.423879 6232.15196 4866.279098 5328.800532 8259.984696 4087.756725 1922.297672 1.357537117 2.461868075 2.393317618 2.219959969 3.242032726 2.531490918 2.772099561 4.296933206 2.126495176 1 10.90861604 -3.213702207 0.171340893 0.528281899 8.018741135 0.580896951 0.564552617 8.152452601 0.171189442 0.765274265 13.87688399 0.000611361 3.213702207 7.490459236 TEMQDNTYPEILR ddPTM_HeLa_CUDC101_4h_R1 1 TEMQDNTYPEILR 13 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 0 102.53 0.038808 6183500 912.14 917.18 1084.3 913.74 688.52 666.17 717.68 667.38 923.17 934.59 FALSE FALSE TRUE 805.2203319 945.4372287 1142.920538 951.0062667 637.7292513 653.4639172 745.361158 743.3518416 885.1165419 929.0310171 0.866731376 1.017659487 1.230228611 1.023653946 0.686445597 0.703382239 0.80229954 0.800136732 0.952730884 1 9.859582954 -5.763121566 24.99999762 0.972159985 0.748748136 0.627540088 0.097487057 30.49873227 453271.7625 0.017085232 0.032185441 1.73E-06 5.763121566 -0.223411849 SEEKIS(ph)DSEGFK ddPTM_HeLa_CUDC101_4h_R1 1 SEEKISDSEGFK 12 1 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 0 SEEKIS(0.909)DS(0.091)EGFK 151.56 0.0025703 25441000 2738.8 1935.9 1906.6 2233.5 2245.9 2571 2246 2727.8 1943.7 2301.5 TRUE FALSE FALSE 2417.762016 1995.542784 2009.676563 2324.591784 2080.224431 2521.962459 2332.628972 3038.321726 1863.579863 2287.810576 1.056801661 0.872250004 0.878427867 1.016077034 0.909264278 1.102347583 1.019590082 1.328047767 0.814569127 1 11.15975189 -3.212050252 1.29540835 0.99886392 4.797735719 0.554939984 0.093320663 9.308907735 1.554361609 0.011462538 87.05691405 0.000613691 3.212050252 3.7988718 SQSSDTEQQS(ph)PTSGGGK ddPTM_HeLa_CUDC101_4h_R1 8 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SQSSDTEQQS(0.994)PT(0.006)SGGGK;SQS(0.001)S(0.011)DT(0.272)EQQS(0.709)PT(0.005)S(0.002)GGGK;SQSS(0.001)DTEQQS(0.939)PT(0.045)S(0.014)GGGK;SQSSDT(0.002)EQQS(0.992)PT(0.006)SGGGK;SQSSDTEQQS(0.995)PT(0.005)SGGGK;SQS(0.004)S(0.004)DT(0.001)EQQS(0.971)PT(0.017)S(0.001)GGGK;SQSSDTEQQS(0.985)PT(0.013)S(0.002)GGGK;SQSS(0.001)DT(0.004)EQQS(0.973)PT(0.02)S(0.002)GGGK ;;;;;;; 300.25 4.21E-123 2144770600 15485.73 11080.67 14761.88 14061.15 12854.48 12131.84 11862.91 7731.8 14247.58 16844.99 TRUE FALSE FALSE 13670.5162 11422.05231 15559.95189 14634.62447 11906.23062 11900.44537 12320.46641 8611.956859 13660.28872 16744.79525 0.816403903 0.682125528 0.929241096 0.873980497 0.711040681 0.710695185 0.735778863 0.514306489 0.815793118 1 14.03142511 -3.211476341 0.091150445 1.188337731 4.79E-13 0.435996518 0.09900322 42.04100461 0.457994864 1.235931252 6.616807899 0.000614503 3.211476341 -1.188337731 LAS(ph)IDEK ddPTM_HeLa_CUDC101_4h_R1 1 LASIDEK 7 0 E9PNR6;H0YE29;Q07960 E9PNR6 ARHGAP1 Rho GTPase-activating protein 1 1 0 LAS(1)IDEK 106.2 0.015096 27144000 6269.1 4911.2 4818 5213.4 5170.3 5566.7 4370.2 2451.7 5334.7 6637 TRUE FALSE FALSE 5534.245601 5062.508251 5078.475654 5426.024986 4788.89727 5460.524472 4538.760078 2730.791618 5114.801408 6597.522829 0.838836901 0.767334708 0.769754919 0.822433681 0.725862933 0.827662839 0.687949128 0.413911659 0.775260888 1 12.68770872 -3.206976156 0.146434243 1.057723777 7.98E-18 0.467333063 0.102884969 15.08664401 0.267269485 0.242381417 3.1180736 0.000620903 3.206976156 -1.057723777 GGPGAAPGGAS(ph)PASSSSAASSPS(ph)SGR ddPTM_HeLa_CUDC101_4h_R1 1 GGPGAAPGGASPASSSSAASSPSSGR 26 0 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 2 0 GGPGAAPGGAS(0.916)PAS(0.08)S(0.004)SSAAS(0.302)S(0.261)PS(0.357)S(0.08)GR 149.64 6.00E-10 4048200 3466.5 2360 2688 2557.3 2526.5 2666.4 2374.2 1459.5 2629.2 2981.2 TRUE FALSE FALSE 3060.162125 2432.708803 2833.321411 2661.597748 2340.125128 2615.542863 2465.773689 1625.64358 2520.823263 2963.46769 1.032628814 0.820899385 0.956083112 0.898136247 0.789657716 0.88259537 0.832056883 0.548561264 0.85063295 1 11.53307061 -3.206204002 0.320419195 1.020034159 2.67E-12 0.505121451 0.090342452 5.158825112 0.225280877 0.027050035 2.345694757 0.000622008 3.206204002 -1.020034159 LENS(ph)PLGEALR ddPTM_HeLa_CUDC101_4h_R1 1 LENSPLGEALR 11 0 D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;D6RDK6;D6RBN5;Q9NX40-3;Q9NX40-2;Q9NX40-4;Q9NX40 D6RI08 OCIAD1 OCIA domain-containing protein 1 1 0 LENS(1)PLGEALR 143.93 0.001184 77588000 3398.9 2565.2 2374.3 2294.4 2719.6 2582.9 2186.6 1740.8 2583.7 2421.2 TRUE FALSE FALSE 3000.486094 2644.230771 2502.66184 2387.975549 2518.980526 2533.635486 2270.937894 1938.965635 2477.198792 2406.798595 1.246671035 1.098650621 1.03983019 0.992179219 1.046610436 1.05269942 0.94355128 0.805620229 1.029250556 1 11.2328997 -3.202208878 0.556030851 1.108898649 1.77E-16 0.546943946 0.071391092 6.98978049 0.615597121 0.01857421 6.571085203 0.000627756 3.202208878 -1.108898649 VSPLNLSSVT(ph)P ddPTM_HeLa_CUDC101_4h_R1 4 VSPLNLSSVTP 11 0 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 1 0 VSPLNLSSVT(1)P;VSPLNLSSVT(1)P;VSPLNLSSVT(1)P;VSPLNLSSVT(1)P ;;; 134.75 0.00054561 17677900 12500.8 10140.7 8776.4 8986.2 11145.9 10053 8469.4 6819.9 10883.1 10001.1 TRUE FALSE FALSE 11035.47517 10453.12295 9250.878731 9352.696078 10323.68916 9861.255774 8796.067595 7596.249849 10434.49401 9941.613012 1.11002864 1.051451403 0.930520904 0.940762436 1.038432008 0.991917082 0.884772681 0.764086254 1.049577568 1 13.27926423 -3.201439322 0.569565115 1.043824096 5.41E-13 0.708705804 0.051297804 4.837273798 0.43829514 0.011670827 4.407048216 0.00062887 3.201439322 -1.043824096 ADY(ph)DTLSLR ddPTM_HeLa_CUDC101_4h_R1 1 ADYDTLSLR 9 0 Q9Y446;Q9Y446-2;E9PKC4;E9PK71;E9PJR7;E9PRW6;E9PQ15 Q9Y446 PKP3 Plakophilin-3 1 0 ADY(1)DTLSLR 141.52 0.009726 4544500 2883.4 2974.5 2678.1 2391.8 2944.6 2425.8 1945.3 1659.5 2953.1 3400.3 TRUE FALSE FALSE 2545.412223 3066.140819 2822.886187 2489.347942 2727.382724 2379.531907 2020.330873 1848.410772 2831.371968 3380.074864 0.75306386 0.907122162 0.83515493 0.736477162 0.806900094 0.70398793 0.597717788 0.54685498 0.837665461 1 11.72283949 -3.199099253 0.107989493 1.112763954 5.55E-20 0.681860396 0.072904855 26.2436223 0.338484634 0.615368327 4.387742251 0.000632267 3.199099253 -1.112763954 TEPTGPK(ac)LEALR ddPTM_HeLa_CUDC101_4h_R1 1 TEPTGPKLEALR 12 1 A0A087WY61;Q14980-2;Q14980;Q14980-4;Q14980-3 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 0 1 TEPTGPK(1)LEALR 95.401 0.03696 0 0 71.919 0 139.44 0 124.42 0 0 0 0 FALSE TRUE FALSE 0 74.13473914 0 145.1269659 0 122.0468958 0 0 0 0 0 RSS(ph)SSGDQSSDSLNSPTLLAL ddPTM_HeLa_CUDC101_4h_R1 1 RSSSSGDQSSDSLNSPTLLAL 21 1 P15408;P15408-3;P15408-2 P15408 FOSL2 Fos-related antigen 2 1 0 RS(0.236)S(0.664)S(0.053)S(0.023)GDQS(0.011)S(0.011)DS(0.001)LNSPTLLAL 83.948 0.002364 20990000 1350.8 1387.5 1128.7 1050.4 1752.8 1615.4 2015.1 3048 1324.4 1311.8 TRUE FALSE FALSE 1192.461272 1430.24723 1189.720936 1093.239852 1623.499436 1584.588936 2092.823082 3394.972 1269.807671 1303.997355 0.91446602 1.096817585 0.912364532 0.83837582 1.24501743 1.215178029 1.604928931 2.603511415 0.973780864 1 10.34872523 -3.19664436 0.810845684 0.960570012 10.02586573 0.964947317 0.093921508 1.306269489 0.17077222 0.014616948 16.00121451 0.000635851 3.19664436 9.065295716 up TEQEEDEELLTESSK ddPTM_HeLa_CUDC101_4h_R1 1 TEQEEDEELLTESSK 15 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 0 141.65 0.0022379 4724800 2883.2 2991.8 2474.3 2070.4 2749.6 2825.1 2079.6 2280.8 2908.8 3062.9 FALSE FALSE TRUE 2545.235667 3083.973812 2608.068142 2154.839861 2546.767486 2771.215924 2159.810869 2540.437053 2788.898033 3044.681735 0.835961157 1.012905151 0.856597953 0.707738952 0.83646427 0.910182464 0.709371638 0.834385093 0.915990004 1 11.57207571 -6.52710257 24.53561848 0.927512375 0.800739123 0.455220998 0.072418232 81.9010732 475749.9144 0.013067554 0.018526569 2.97E-07 6.52710257 -0.126773252 RPGNSTVTSS(ph)PPVT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 RPGNSTVTSSPPVTPK 16 1 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 2 0 RPGNSTVT(0.016)S(0.371)S(0.621)PPVT(0.992)PK 74.444 0.028063 17413000 5009.5 4274 3962.7 3877.6 4687.3 3800.5 4082.6 3050.5 3686.6 4046.6 TRUE FALSE FALSE 4422.294004 4405.676874 4176.935549 4035.745288 4341.527217 3728.011795 4240.06725 3397.756589 3534.636788 4022.530643 1.09938106 1.095250047 1.038385017 1.003285157 1.07930246 0.926782696 1.05407954 0.844681344 0.878709723 1 11.9738877 -3.196008843 0.852055179 1.048293902 2.18E-13 0.260325445 0.073885385 7.403374605 1.007196938 0.008566321 11.17007185 0.000636783 3.196008843 -1.048293902 GS(ph)FMLGLETHDR ddPTM_HeLa_CUDC101_4h_R1 2 GSFMLGLETHDR 12 0 Q92905 Q92905 COPS5 COP9 signalosome complex subunit 5 1 0 GS(1)FMLGLETHDR;GS(1)FMLGLETHDR ; 118.52 0.00015359 2507000 4738.7 3740.8 3818.4 3346.6 4182.8 4809.9 4109.2 4929.3 3904.3 4282.5 TRUE FALSE FALSE 4183.236769 3856.049614 4024.834254 3483.088813 3874.243177 4718.159171 4267.69322 5490.431587 3743.363101 4257.0275 0.982666137 0.905808011 0.945456484 0.818197396 0.910081783 1.108322455 1.002505439 1.289733643 0.879337308 1 12.05563069 -3.195388679 1.104764827 0.967557597 3.76874004 0.648436762 0.075242779 7.404206685 1.164275984 0.011137879 41.74454059 0.000637693 3.195388679 2.801182443 TEQGEEEEEEEDEEEEEK ddPTM_HeLa_CUDC101_4h_R1 1 TEQGEEEEEEEDEEEEEK 18 0 P98175-5;P98175-2;P98175 P98175-5 RBM10 RNA-binding protein 10 0 0 96.391 0.00042461 0 1103.9 852.56 937.2 829.02 840.16 726.73 683.36 960.58 1254.9 782.62 FALSE FALSE TRUE 974.5025154 878.8263631 987.8678669 862.8310189 778.1830706 712.8688361 709.7174241 1069.928544 1203.172491 777.9649414 1.252630374 1.129647772 1.269810263 1.109087278 1.000280384 0.916325143 0.912274302 1.375291465 1.546563896 1 9.603561332 -5.892725679 5.892074486 1.13576364 1.032225639 0.065281434 0.191177404 0.415123329 20.29581423 0.022654791 0.041487202 1.28E-06 5.892725679 -0.103538001 GASGTVLLAGSSLMAS(ph)PYK ddPTM_HeLa_CUDC101_4h_R1 1 GASGTVLLAGSSLMASPYK 19 0 Q9NPG3;Q9NPG3-2 Q9NPG3 UBN1 Ubinuclein-1 1 0 GASGTVLLAGS(0.001)S(0.003)LMAS(0.995)PYK 81.01 0.0059481 7158400 1419.5 1061.6 1062.3 1227.1 1425.5 1132.4 1066.5 732.83 1061.3 1472.3 TRUE FALSE FALSE 1253.108362 1094.306638 1119.731151 1277.146442 1320.343705 1110.801357 1107.635262 816.252405 1017.552765 1463.542694 0.856215788 0.747710772 0.765082669 0.872640373 0.90215592 0.758981177 0.756817869 0.557723672 0.695266881 1 10.51524912 -3.194742972 0.065765845 1.314474447 8.84E-15 0 0.119076492 82.17846155 0.641734158 3.375417675 11.64188773 0.000638641 3.194742972 -1.314474447 NSSS(ph)PVSLDAALPESSNVYRDPSAK ddPTM_HeLa_CUDC101_4h_R1 2 NSSSPVSLDAALPESSNVYRDPSAK 25 1 H7C296;R4GN32;H7C1E9;Q70EL1-6;Q70EL1-7;Q70EL1 H7C296 USP54 Inactive ubiquitin carboxyl-terminal hydrolase 54 1 0 NS(0.028)S(0.269)S(0.694)PVS(0.009)LDAALPESSNVYRDPSAK;NS(0.02)S(0.166)S(0.454)PVS(0.347)LDAALPES(0.004)S(0.004)NVY(0.004)RDPS(0.001)AK ; 92.225 7.40E-06 24889000 6920.4 6088.9 5786 5235.9 6578.3 5053.8 5054.9 3778 5793.7 6198.3 TRUE FALSE FALSE 6109.201203 6276.491792 6098.808662 5449.442633 6093.031915 4957.407185 5249.869186 4208.072249 5554.881234 6161.432236 0.991522907 1.018674157 0.989836198 0.88444414 0.988898633 0.804586823 0.852053384 0.682969817 0.901556817 1 12.58905003 -3.194139885 0.456004775 1.001237182 4.56E-09 0.739423718 0.052523668 2.634548671 0.179778108 0.008183367 1.770539696 0.000639529 3.194139885 -1.001237177 S(ph)LLELAR ddPTM_HeLa_CUDC101_4h_R1 1 SLLELAR 7 0 P49321;P49321-3;E9PPR5;P49321-2;E9PPQ8;E9PI86 P49321 NASP Nuclear autoantigenic sperm protein 1 0 S(1)LLELAR 101.9 0.019711 1665600 644.99 697.58 473.08 429.09 765.81 654.9 352.02 486.32 525.93 491.72 TRUE FALSE FALSE 569.3852499 719.071613 498.6561358 446.5901449 709.317722 642.4088736 365.5975293 541.680703 504.2509428 488.7952276 1.164874814 1.471110134 1.020173904 0.91365488 1.451155171 1.314269938 0.747956422 1.108195564 1.031620021 1 8.933086389 -3.188635336 13.87094884 1.108837503 1.11765175 0 0.220854411 0 0 0.028652307 0 0.000647686 3.188635336 0.008814247 AS(ph)SMPATLLHSR ddPTM_HeLa_CUDC101_4h_R1 1 ASSMPATLLHSR 12 0 Q5T7N3 Q5T7N3 KANK4 KN motif and ankyrin repeat domain-containing protein 4 1 0 AS(0.5)S(0.5)MPATLLHSR 132.51 1.28E-05 0 3990.6 2877.4 2793.8 3020.8 3369.9 3611.4 3403.7 3941.7 3026.8 2869.8 TRUE FALSE FALSE 3522.827917 2966.049283 2944.841279 3144.001281 3121.309191 3542.518562 3534.981849 4390.407195 2902.034023 2852.730302 1.234896939 1.039722991 1.032288708 1.102102529 1.094148013 1.241799325 1.239157395 1.539019371 1.017282994 1 11.47812765 -3.186687977 0.813504415 1.099392985 3.537489556 0.792432286 0.071501106 5.125707093 0.662525123 0.014848283 17.01459184 0.000650597 3.186687977 2.438096572 ELEEEEENS(ph)DEDELDSHTMVK ddPTM_HeLa_CUDC101_4h_R1 1 ELEEEEENSDEDELDSHTMVK 21 0 E5RFQ9;A0A087WZ06;Q13188;Q13188-2 E5RFQ9 STK3 Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit 1 0 ELEEEEENS(0.993)DEDELDS(0.007)HT(0.001)MVK 76.118 0.015035 23161000 1365.7 1358.3 1294.6 1377.9 1544.1 1236.7 1124.2 1114.2 1253.7 1259.6 TRUE FALSE FALSE 1205.614716 1400.147613 1364.589992 1434.096718 1430.194819 1213.112008 1167.560771 1241.036024 1202.021955 1252.107843 0.962868113 1.118232444 1.089834234 1.145346006 1.142229742 0.968855849 0.932476206 0.991157456 0.959998743 1 10.29014311 -3.1863197 13.89328242 1.013953066 1.040109342 0 0.080782707 0 0 0.011801234 0 0.000651149 3.1863197 0.026156276 VLTANSNPS(ph)SPSAAK ddPTM_HeLa_CUDC101_4h_R1 3 VLTANSNPSSPSAAK 15 0 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 1 0 VLTANSNPS(0.499)S(0.499)PS(0.001)AAK;VLTANS(0.002)NPS(0.707)S(0.287)PS(0.004)AAK;VLTANS(0.001)NPS(0.948)S(0.052)PSAAK ;; 273.54 8.36E-86 242385000 22394.4 17951.4 17473.8 17076.2 17932.3 16500.4 14615.8 11117.7 19540.8 20268.8 TRUE FALSE FALSE 19769.36238 18504.46136 18418.48648 17772.64125 16609.46996 16185.68236 15179.5363 12383.29403 18735.31995 20148.24028 0.981195485 0.918415758 0.914148642 0.88209397 0.824363306 0.803329826 0.753392658 0.614609209 0.929873761 1 14.29836622 -3.185620823 0.304018689 1.007675831 1.01E-17 0.930147165 0.029195015 1.371123689 0.055482703 0.007490104 0.581985989 0.000652198 3.185620823 -1.007675831 AAVVTS(ph)PPPTTAPHK ddPTM_HeLa_CUDC101_4h_R1 2 AAVVTSPPPTTAPHK 15 0 E7EV99;E7ENY0;P35611-2;P35611-6;P35611-4;P35611;P35611-3;P35611-5;A0A0A0MSR2;D6RJE2;D6RAH3;D6RF25 E7EV99 ADD1 Alpha-adducin 1 0 AAVVT(0.057)S(0.943)PPPTTAPHK;AAVVT(0.006)S(0.994)PPPTTAPHK ; 145.1 0.00032648 265970000 6675.5 5450.3 5254.2 5357.4 5134 4940.6 4536.7 3829.8 5656 6865.9 TRUE FALSE FALSE 5893.008009 5618.217283 5538.257945 5575.897929 4755.275048 4846.366287 4711.682039 4265.768951 5422.857286 6825.061321 0.863436639 0.823174623 0.811459075 0.816974041 0.696737337 0.710083918 0.69035014 0.625015476 0.794550705 1 12.73662629 -3.185119144 0.10563848 1.161679628 1.16E-14 0.56846223 0.066854303 7.263439538 0.091255493 0.180352348 1.245360432 0.000652951 3.185119144 -1.161679628 DSITPDIATKPGQPLFLDSIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 DSITPDIATKPGQPLFLDSISPK 23 1 Q2TB10 Q2TB10 ZNF800 Zinc finger protein 800 1 0 DSITPDIATKPGQPLFLDS(0.082)IS(0.918)PK 103.33 2.39E-05 41630000 3643.6 2972.8 3041.3 2703.3 2643.2 3345.1 2117.3 1796.1 3469 3557.4 TRUE FALSE FALSE 3216.502731 3064.388444 3205.721877 2813.552259 2448.216402 3281.297791 2198.96497 2000.560764 3326.006352 3536.240427 0.909582591 0.86656677 0.906533915 0.795633758 0.692321818 0.92790574 0.621836953 0.565730981 0.940548704 1 11.78800065 -3.184734187 0.239650665 0.999284282 3.90E-15 0.707896965 0.075858524 6.520745792 0.197776856 0.050068931 2.106952888 0.00065353 3.184734187 -0.999284282 TTPTPS(ph)TNSVLSTSTNR ddPTM_HeLa_CUDC101_4h_R1 1 TTPTPSTNSVLSTSTNR 17 0 E7ETY4;E9PC69;Q7KZI7-10;Q7KZI7-12;Q7KZI7-8;Q7KZI7-11;Q7KZI7-6;Q7KZI7-3;Q7KZI7-14;Q7KZI7-9;Q7KZI7-13;Q7KZI7-4;Q7KZI7-16;Q7KZI7-5;Q7KZI7-15;Q7KZI7-2;Q7KZI7-7;Q7KZI7 E7ETY4 MARK2 Serine/threonine-protein kinase MARK2 1 0 TTPTPS(0.624)T(0.288)NS(0.087)VLSTSTNR 159.64 4.70E-05 6850300 1510.6 1381.7 1549.1 1316.1 1625.1 1489.2 1598.5 1666 1813.4 1853.5 TRUE FALSE FALSE 1333.529758 1424.268539 1632.849032 1369.776247 1505.219611 1460.795991 1660.15468 1855.650706 1738.650884 1842.4753 0.723770765 0.773019068 0.886225738 0.743443479 0.81695511 0.792844274 0.901045827 1.007150927 0.943649494 1 10.84742956 -3.181232266 20.92563883 0.854741571 44.14031636 0 0.0984108 0 0 0.015873741 0 0.000658821 3.181232266 43.28557479 KDASSS(ph)PASTASSASSTSLK ddPTM_HeLa_CUDC101_4h_R1 2 KDASSSPASTASSASSTSLK 20 1 A0A669KBK8;Q04724 A0A669KBK8 TLE1 Transducin-like enhancer protein 1 1 0 KDAS(0.276)S(0.276)S(0.447)PAS(0.001)TASSASSTSLK;KDAS(0.212)S(0.212)S(0.572)PAS(0.003)TASSASSTSLK ; 74.324 0.0023856 8410400 3783 2975 2990.2 3174.3 3733.3 3317.1 3080.3 3286.1 3802.7 3400 TRUE FALSE FALSE 3339.562475 3066.656224 3151.859257 3303.761674 3457.901897 3253.831844 3199.108203 3660.176341 3645.951096 3379.776649 0.988101529 0.907354699 0.932564363 0.977508876 1.023115506 0.962735761 0.946544265 1.082963971 1.078755041 1 11.72271219 -3.180476871 14.38911424 0.984906458 0.9850685 0 0.055581183 0 0 0.006006245 0 0.000659968 3.180476871 0.000162042 TETQEK(ac)NPLPSK ddPTM_HeLa_CUDC101_4h_R1 2 TETQEKNPLPSK 12 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 ; TETQEK(1)NPLPSK;TETQEK(1)NPLPSK 231.67 2.05E-30 29211000 9515.3 4778.2 5352.2 3987.5 8138 7216.1 8444.7 7244.7 7586.9 6982.5 FALSE TRUE FALSE 8399.930958 4925.410678 5641.556122 4150.127485 7537.675953 7078.464915 8770.414908 8069.407364 7274.164771 6940.967779 1.21019593 0.709614399 0.812790997 0.597917699 1.085969017 1.019809505 1.263572341 1.162576693 1.0480044 1 12.76092112 -7.310036602 24.99437789 1.099259166 0.95141514 0.08867247 0.198051787 727.2457139 374033.2708 0.037573011 0.04296642 4.90E-08 7.310036602 -0.147844026 TETQEK(ac)NPLPSKETIEQEK ddPTM_HeLa_CUDC101_4h_R1 1 TETQEKNPLPSKETIEQEK 19 2 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 1 TETQEK(0.895)NPLPSK(0.105)ETIEQEK 120.08 0.0047839 1514700 1156.1 668.92 642.33 459.88 1427.2 1054.3 1083.5 1170.2 1056.8 574.01 FALSE TRUE FALSE 1020.583711 689.5286323 677.0563027 478.6358942 1321.918299 1034.190984 1125.290958 1303.410838 1013.238257 570.595763 1.788628267 1.208436299 1.186577866 0.838835346 2.316733465 1.812475751 1.972133393 2.284298136 1.775754961 1 9.156325224 -1 0.256211823 1.237994337 8.241008768 0.35962655 0.399500121 38.34212148 0.48130356 0.218797372 118.1056715 0.1 1 7.00301443 TETQEK(ac)NTLPTK ddPTM_HeLa_CUDC101_4h_R1 1 TETQEKNTLPTK 12 1 P63313;CON__P21752 P63313 TMSB10 Thymosin beta-10 0 1 TETQEK(1)NTLPTK 207.47 1.45E-15 1355100 385.16 324.34 441.53 617.86 483.65 364.85 573.77 584.94 503.88 444.19 FALSE TRUE FALSE 340.0121287 334.332531 465.4004474 643.0590014 447.9721031 357.8910941 595.9005011 651.5272052 483.1098531 441.5479381 0.770045785 0.757182861 1.054020203 1.456374146 1.01454919 0.810537347 1.349571473 1.475552593 1.094127752 1 8.786426267 -6.530318108 10.75137481 0.879545537 1.200249609 0.332168133 0.209181222 0.186371176 246.3107342 0.033298283 0.047662952 2.95E-07 6.530318108 0.320704072 TETQEKNPLPSK ddPTM_HeLa_CUDC101_4h_R1 1 TETQEKNPLPSK 12 1 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 0 89.805 0.027062 15656000 9643.5 9311 8783.9 8930.1 9013.4 8260.8 9099.1 8864.5 9526.1 9488.4 FALSE FALSE TRUE 8513.103549 9597.860874 9258.784204 9294.308077 8348.499439 8103.239003 9450.055335 9873.598848 9133.430126 9431.962575 0.902580293 1.017588948 0.981639201 0.98540553 0.885128559 0.859125441 1.001918239 1.04682337 0.968348851 1 13.20334228 TETVEEPMEEEEAAKEEKEESDDEAAVEEEEEEK ddPTM_HeLa_CUDC101_4h_R1 1 TETVEEPMEEEEAAKEEKEESDDEAAVEEEEEEK 34 2 P14625 P14625 HSP90B1 Endoplasmin 0 0 54.425 0.0021373 7984100 1244.8 926.01 628.64 748.15 1026.8 1101 703.18 760.4 1077.7 1043 FALSE FALSE TRUE 1098.886431 954.5392705 662.6261799 778.6627908 951.0550097 1080.000259 730.3018881 846.9608624 1033.27675 1036.79619 1.059886641 0.920662402 0.63910939 0.751027828 0.917301799 1.041670745 0.704383268 0.816901982 0.996605466 1 10.01791661 -7.000167084 24.99999233 1.026279532 0.816055845 0.437297152 0.10576559 4.14080503 619686.8881 0.017727733 0.023159211 1.00E-07 7.000167084 -0.210223687 TETVVDDWDEEFDR ddPTM_HeLa_CUDC101_4h_R1 2 TETVVDDWDEEFDR 14 0 Q9P275;K7EKN3;K7EKL7;K7EIH0 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36 0 0 ; ; 147.58 0.00087235 3680900 13399.5 14038.9 13946.4 14360.9 19042.4 17007.1 16668.3 17554.7 15464.2 16184.7 FALSE FALSE TRUE 11828.83092 14471.42187 14700.38457 14946.59958 17637.68009 16682.7179 17311.20191 19553.05609 14826.75913 16088.43268 0.735238239 0.899492334 0.913723845 0.929027698 1.096295732 1.036938665 1.076003005 1.215348721 0.92157884 1 13.97373617 -5.72611034 1.149458993 0.873818449 1.128899656 0.644743607 0.075041099 0.31382238 0.809740214 0.017295002 0.050788877 1.88E-06 5.72611034 0.255081207 KGLPLGSAVSSPVLFS(ph)PVGR ddPTM_HeLa_CUDC101_4h_R1 2 KGLPLGSAVSSPVLFSPVGR 20 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 1 0 KGLPLGSAVSS(0.002)PVLFS(0.998)PVGR;KGLPLGSAVS(0.002)S(0.103)PVLFS(0.895)PVGR ; 134.81 1.04E-05 65009000 8291.2 6684.3 6041.4 6539.9 7370.3 6353.6 5943.8 4283.6 6426.8 7148.6 TRUE FALSE FALSE 7319.318105 6890.23536 6368.016358 6806.62539 6826.607653 6232.415666 6173.054357 4771.227709 6161.884584 7106.079809 1.030007867 0.969625383 0.896136341 0.957859407 0.960671402 0.877053992 0.868700398 0.671428951 0.867128536 1 12.79483818 -3.178917626 0.466107623 1.009099223 2.54E-18 0.630123714 0.058540521 2.89262925 0.200711307 0.008571247 2.017073257 0.000662342 3.178917626 -1.009099223 LNHVAAGLVS(ph)PSLK ddPTM_HeLa_CUDC101_4h_R1 2 LNHVAAGLVSPSLK 14 0 Q5T757;Q05519-2;Q05519;Q5T760 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 0 LNHVAAGLVS(0.96)PS(0.04)LK;LNHVAAGLVS(0.883)PS(0.117)LK ; 179.81 4.68E-08 454390000 11571.4 9898.9 8288.1 8792.4 10289.6 9305.7 7930.5 5602.4 10252.5 10569.5 TRUE FALSE FALSE 10215.01803 10203.87338 8736.179756 9150.992076 9530.556708 9128.209277 8236.382042 6240.15457 9829.887611 10506.63214 0.972244759 0.971184033 0.831491922 0.87097292 0.907099114 0.868804499 0.783922186 0.593925293 0.935588824 1 13.35901267 -3.178186992 0.363587862 0.99134887 3.92E-17 0.803302865 0.050227499 3.500307137 0.176833252 0.014392803 1.794883449 0.000663457 3.178186992 -0.99134887 MFS(ph)PMEEK ddPTM_HeLa_CUDC101_4h_R1 2 MFSPMEEK 8 0 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 0 MFS(1)PMEEK;MFS(1)PMEEK ; 110.38 0.011425 28957000 7983.7 6450.6 6137.8 6233.8 7108.4 5843 5414.1 3664.3 7612.8 7876.1 TRUE FALSE FALSE 7047.862789 6649.33534 6469.628034 6488.041309 6584.027494 5731.55451 5622.923651 4081.4291 7298.997162 7829.252607 0.900196116 0.849293754 0.826340439 0.828692295 0.840952237 0.732069177 0.718194179 0.521305073 0.932272533 1 12.93465888 -3.176130154 0.233204984 0.997079669 3.17E-19 0.884164864 0.043038239 3.899195986 0.114167745 0.030853137 1.22126367 0.000666607 3.176130154 -0.997079669 TFDHYCEYR ddPTM_HeLa_CUDC101_4h_R1 2 TFDHYCEYR 9 0 Q14204;A0A2R8YFZ7;A0A2R8Y6H2;A0A2R8YGC7 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 157.34 8.71E-05 38973000 15617 9219.8 7937.9 9452.1 10003.4 10435.8 8782.6 7246.1 7591.6 3342.7 FALSE FALSE TRUE 13786.39893 9503.85111 8367.046885 9837.597493 9265.469112 10236.7545 9121.347824 8070.966734 7278.671035 3322.817472 4.149008801 2.860178505 2.51805793 2.960619287 2.788437581 3.080745358 2.745064362 2.42895278 2.190511846 1 11.69819133 -9.547478713 1.321465985 1.002725628 3.071519459 0.405995079 0.57656756 0.218692997 0.685584038 0.401863948 0.095803359 2.83E-10 9.547478713 2.068793831 TFDQLTPDESKER ddPTM_HeLa_CUDC101_4h_R1 2 TFDQLTPDESKER 13 1 Q15293 Q15293 RCN1 Reticulocalbin-1 0 0 ; ; 152 0.00032223 16370900 3240.6 2769.8 2765.5 2722.7 3275.4 2887.2 2366.3 3066.9 3124.1 2716.3 FALSE FALSE TRUE 2860.74178 2855.134255 2915.011295 2833.743475 3033.780268 2832.13147 2457.568984 3416.023499 2995.323276 2700.143327 1.059477751 1.057401 1.079576505 1.04947891 1.123562678 1.048881903 0.91016242 1.265126731 1.109320104 1 11.39882027 TFEEDPAVGAIVLTGGDK ddPTM_HeLa_CUDC101_4h_R1 1 TFEEDPAVGAIVLTGGDK 18 0 P30084 P30084 ECHS1 "Enoyl-CoA hydratase, mitochondrial" 0 0 105.19 0.004739 5704900 1943.7 1641 1792.8 1854.3 2129 1783.4 1578.3 1875.6 2060.9 1875 FALSE FALSE TRUE 1715.862432 1691.557265 1889.724191 1929.926369 1971.947912 1749.384616 1639.17556 2089.110723 1975.94883 1863.847417 0.920602415 0.907562094 1.013883526 1.035452984 1.057998575 0.938587891 0.879458021 1.120859306 1.060145166 1 10.86406804 -6.717878177 24.99578284 0.957338149 1.002282678 0.035888613 0.073320495 267.3221214 153390.8606 0.01078207 0.015248106 1.91E-07 6.717878177 0.044944529 TFEHVTSEIGAEEAEEVGVEHLLR ddPTM_HeLa_CUDC101_4h_R1 2 TFEHVTSEIGAEEAEEVGVEHLLR 24 0 P51665;H3BNT7;H3BTM8 P51665 PSMD7 26S proteasome non-ATPase regulatory subunit 7 0 0 ; ; 164.89 1.57E-09 6466800 2133.4 1509.91 1433.84 1771.03 2532.1 2009.79 2000.43 2279.8 2386.2 1830.86 FALSE FALSE TRUE 1883.326086 1556.428537 1511.357728 1843.260258 2345.312028 1971.456604 2077.587255 2539.323217 2287.839826 1819.969963 1.034811631 0.855194629 0.830430039 1.012797077 1.28865425 1.083235792 1.141550299 1.395255564 1.257075596 1 10.82969893 -2.994560906 0.551171519 0.994447005 2.702091724 0.389076811 0.136027639 7.865643089 0.567260587 0.021404476 11.86689518 0.001012603 2.994560906 1.70764472 TFFPEYTHQLFGDDETAFGYK ddPTM_HeLa_CUDC101_4h_R1 2 TFFPEYTHQLFGDDETAFGYK 21 0 O14929 O14929 HAT1 Histone acetyltransferase type B catalytic subunit 0 0 ; ; 66.644 0.0015843 0 2092.25 1721.1 1655.39 1549.41 1935.96 1637.56 1742.16 1576.66 1937.24 2458.2 FALSE FALSE TRUE 1846.999627 1774.125051 1744.885391 1612.601637 1793.148088 1606.326271 1809.355695 1756.140601 1857.386147 2443.578517 0.755858514 0.726035623 0.714069705 0.659934447 0.733820532 0.657366342 0.740453266 0.718675741 0.760109051 1 11.25477975 -8.877663997 0.509302047 1.034044651 0.69743849 0.261840893 0.077997184 0.188470768 0.083160691 0.030382906 0.007570908 1.33E-09 8.877663997 -0.33660616 TFIAIKPDGVQR ddPTM_HeLa_CUDC101_4h_R1 4 TFIAIKPDGVQR 12 1 Q32Q12;P22392-2;J3KPD9;P22392;E7ERL0;E5RHP0;F6XY72;C9K028;P15531;P15531-2 Q32Q12;P15531 NME1-NME2;NME2;NME1 Nucleoside diphosphate kinase;Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A 0 0 ;;; ;;; 142.19 0.00073112 158921700 13029.2 11192.2 12521.9 11419.5 12395.5 11516.8 10622.4 9353.1 10823.4 12530.3 FALSE FALSE TRUE 11501.93693 11537.01842 13198.87179 11885.23657 11481.10866 11297.13623 11032.10953 10417.8191 10377.25487 12455.76922 0.92342245 0.926238935 1.059659308 0.95419531 0.921750272 0.906980214 0.885702788 0.836385045 0.833128383 1 13.6045265 -4.901266393 1.014340195 0.966755193 0.833404033 0.245719934 0.056809283 0.554876564 0.794537342 0.006886075 0.062733941 1.26E-05 4.901266393 -0.13335116 HLS(ph)ASTPK ddPTM_HeLa_CUDC101_4h_R1 1 HLSASTPK 8 0 I3L2J0 I3L2J0 CIC 1 0 HLS(0.992)AS(0.007)TPK 85.533 0.022592 22268000 9897.8 7151.6 9485.1 9081.7 9528.9 7944.2 8491.8 5839.4 7774.7 7446.8 TRUE FALSE FALSE 8737.594888 7371.932319 9997.893197 9452.09098 8825.972031 7792.677621 8819.331571 6504.133692 7454.223575 7402.506102 1.180356324 0.995869806 1.350609248 1.276877162 1.192295138 1.052708031 1.191398082 0.878639423 1.006986482 1 12.85379806 -3.167482251 10.9881019 1.11127128 1.137279004 0 0.14020957 0 0 0.018509758 0 0.000680014 3.167482251 0.026007723 VS(ph)PFGLR ddPTM_HeLa_CUDC101_4h_R1 1 VSPFGLR 7 0 J3KNZ9;H3BRE6 J3KNZ9 FBRS 1 0 VS(1)PFGLR 85.161 0.038946 32516000 1519.8 1239.5 1106.6 1264.5 1327.2 1180 1042.2 886.89 1404.3 1563 TRUE FALSE FALSE 1341.651348 1277.687526 1166.426143 1316.071776 1229.2951 1157.493466 1082.398003 987.8499727 1346.41416 1553.703206 0.863518426 0.822349803 0.750739355 0.847054811 0.791203297 0.744990074 0.696656864 0.635803523 0.866583884 1 10.60149523 -3.16646596 0.080435812 1.249222743 2.13E-11 0.713294978 0.052000927 21.86675449 0.207544881 0.732602567 3.313833526 0.000681607 3.16646596 -1.249222743 TFLVWVNEEDHLR ddPTM_HeLa_CUDC101_4h_R1 3 TFLVWVNEEDHLR 13 0 P12277;H0YJG0 P12277 CKB Creatine kinase B-type 0 0 ;; ;; 135.81 0.00083154 52313400 9690.3 8466.4 7382.73 8033.88 8639.8 8518.18 7449.44 8002.45 8958.5 9783.86 FALSE FALSE TRUE 8554.417724 8727.239749 7781.862715 8361.536352 8002.459167 8355.709909 7736.767396 8913.416561 8589.226838 9725.665166 0.879571482 0.897341169 0.800136812 0.859739278 0.8228187 0.859140199 0.795500078 0.916484005 0.883150581 1 13.24758121 -8.718234313 0.476479631 1.016054558 0.839923527 0.231042596 0.050323778 0.442881105 0.183794131 0.035673996 0.01029509 1.91E-09 8.718234313 -0.176131031 QQDLHLES(ph)PQRQPEY(ph)SPES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 3 0 QQDLHLES(0.977)PQRQPEY(0.744)S(0.319)PES(0.96)PR 50.224 0.033497 12982000 1676.3 1395.5 1542.2 1555 1505.4 1544.1 1320.5 962.71 1875.4 1242.4 TRUE FALSE FALSE 1479.806655 1438.493701 1625.575997 1618.419621 1394.349641 1514.648865 1371.432127 1072.301015 1798.095218 1235.01015 1.198214165 1.164762655 1.316245051 1.310450462 1.129018771 1.226426249 1.110462232 0.868252796 1.45593558 1 10.27030718 -3.165773995 13.95416827 1.128160958 1.146444612 0 0.166203478 0 0 0.018967465 0 0.000682694 3.165773995 0.018283654 TFNLEK(ac)QNHTPR ddPTM_HeLa_CUDC101_4h_R1 2 TFNLEKQNHTPR 12 1 Q15233;C9JYS8;C9IZL7;C9JJ13;C9J4X2 Q15233 NONO Non-POU domain-containing octamer-binding protein 0 1 ; TFNLEK(1)QNHTPR;TFNLEK(1)QNHTPR 131.79 0.00044152 6884700 3062.6 3258.4 3765.8 3103.2 3076.3 2516.92 2278.54 2680.79 3525.9 4297.8 FALSE TRUE FALSE 2703.606671 3358.787442 3969.390539 3229.761909 2849.367478 2468.913944 2366.424051 2985.960297 3380.56091 4272.236494 0.632831697 0.786189493 0.929113017 0.755988559 0.666949847 0.577897302 0.55390755 0.698922052 0.791285996 1 12.0607758 -13.52287875 0.238255159 2.817599345 0.650496995 0.249903731 0.118686204 28.60444297 0.372841725 24.42764803 0.076334382 3.00E-14 13.52287875 -2.167102351 TFNPGAGLPTDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 TFNPGAGLPTDKK 13 1 P09661;H0YLR3;H0YMA0 P09661 SNRPA1 U2 small nuclear ribonucleoprotein A 0 1 TFNPGAGLPTDK(1)K 122.52 0.0030719 1157200 615.59 305.58 196.06 303.13 686.18 641.12 642.35 604.06 577.26 682.33 FALSE TRUE FALSE 543.4314734 314.9945576 206.6595966 315.4929516 635.5618685 628.8917042 667.1256547 672.8237487 553.4650985 678.2714708 0.801200547 0.464407794 0.304685669 0.465142594 0.937031699 0.927197636 0.983567323 0.991968228 0.815993481 1 9.405719002 -8.353830485 1.261592005 0.962511329 0.728616193 0.067715963 0.237751462 0.620271985 2.003849008 0.07429746 0.051980625 4.43E-09 8.353830485 -0.233895136 GADNDGS(ph)GSESGYTT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 2 0 GADNDGS(0.88)GS(0.039)ES(0.064)GY(0.006)T(0.048)T(0.964)PK;GADNDGS(0.69)GS(0.114)ES(0.196)GY(0.001)T(0.288)T(0.711)PK ; 96.153 0.016471 76293000 7190.4 6324.6 5908.5 5540.4 6402 5584.3 4968.1 4236.9 6875.9 6645.9 TRUE FALSE FALSE 6347.552212 6519.45343 6227.931382 5766.36146 5929.737215 5477.788782 5159.721281 4719.21157 6592.472492 6606.369891 0.960823011 0.986843537 0.942716119 0.872848713 0.897578748 0.829167738 0.78102216 0.714342619 0.997896364 1 12.68964203 -3.163607961 0.324560933 0.995649559 0.186706603 0.964309871 0.017621751 1.65754871 0.07197729 0.006441776 0.610215228 0.000686107 3.163607961 -0.808942956 TFNTSTGGLLLPSDTK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 TFNTSTGGLLLPSDTKR 17 1 P12956;P12956-2;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 1 ; TFNTSTGGLLLPSDTK(1)R;TFNTSTGGLLLPSDTK(1)R 264.85 8.41E-63 1321300 606.54 181.3 202.26 208.3 515.43 682.24 595.47 382.438 638.57 371.76 FALSE TRUE FALSE 535.4423007 186.8856381 213.1947874 216.7953743 477.4077558 669.2274087 618.4374774 425.9731961 612.2478743 369.548755 1.448908414 0.505713077 0.576905711 0.58664891 1.291866768 1.810931304 1.673493603 1.152684701 1.656744519 1 8.529620903 -5.520452095 24.9596381 1.060985778 1.557301756 0.295893459 0.389657788 102.8691138 1058070.491 0.059185256 0.120013359 3.02E-06 5.520452095 0.496315978 EAGENAPVLSDDELVSMS(ph)VR ddPTM_HeLa_CUDC101_4h_R1 1 EAGENAPVLSDDELVSMSVR 20 0 O60675 O60675 MAFK Transcription factor MafK 1 0 EAGENAPVLS(0.208)DDELVS(0.009)MS(0.783)VR 84.173 0.0057385 5641500 1444.5 1488.1 1450.9 1515.5 1388.1 1282.4 1339.6 1020.4 1503.9 1479.8 TRUE FALSE FALSE 1275.1779 1533.946597 1529.340043 1577.308641 1285.702628 1257.940357 1391.268821 1136.558211 1441.908605 1470.998084 0.866879375 1.042793063 1.039661479 1.072271037 0.874034197 0.855161112 0.945799207 0.77264425 0.980224666 1 10.52257965 -3.16349754 0.801873941 0.956362382 2.43E-15 0.388318857 0.073327953 12.46234232 1.540346187 0.013601078 16.05874657 0.000686282 3.16349754 -0.956362382 VKAS(ph)PITNDGEDEFVPS(ph)DGLDKDEYTFSPGK ddPTM_HeLa_CUDC101_4h_R1 1 VKASPITNDGEDEFVPSDGLDKDEYTFSPGK 31 2 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 2 0 VKAS(0.846)PIT(0.154)NDGEDEFVPS(0.458)DGLDKDEY(0.075)T(0.217)FS(0.251)PGK 40.15 0.031568 43689000 2473.7 2368.9 2210.4 2812.3 2302.5 2563.8 2142.7 1811.5 2018.1 2292.2 TRUE FALSE FALSE 2183.736636 2441.883001 2329.90091 2926.99775 2132.649162 2514.899787 2225.344657 2017.713838 1934.913064 2278.565892 0.958382043 1.071675394 1.02252953 1.284578936 0.935961154 1.103720456 0.976642661 0.885519196 0.84918021 1 11.15391038 -3.162839261 13.84141879 1.007622878 1.035775909 0 0.117837035 0 0 0.013707059 0 0.000687323 3.162839261 0.02815303 RLDSDAVNTIESQSVS(ph)PDHNKEPK ddPTM_HeLa_CUDC101_4h_R1 1 RLDSDAVNTIESQSVSPDHNKEPK 24 2 Q3T7B4;Q9H3H1-6;Q9H3H1-3;Q9H3H1-2;Q9H3H1-5;Q9H3H1-4;Q9H3H1 Q3T7B4 TRIT1 "tRNA dimethylallyltransferase, mitochondrial" 1 0 RLDSDAVNTIES(0.005)QS(0.074)VS(0.921)PDHNKEPK 86.987 2.34E-05 26877000 4500.5 2989.9 3433.9 3270.8 3979.1 4039.1 4232.6 3155 4010 3961.3 TRUE FALSE FALSE 3972.958212 3082.015275 3619.547021 3404.197362 3685.56972 3962.060897 4395.8528 3514.152447 3844.706103 3937.738011 1.008944272 0.782686727 0.919194474 0.864505803 0.93596113 1.006176867 1.116339581 0.892429216 0.976374277 1 11.94315141 -3.161834661 13.51721173 0.974027232 0.955481283 0 0.091052581 0 0 0.012480844 0 0.000688915 3.161834661 -0.01854595 RS(ph)HSPSIDGTPK ddPTM_HeLa_CUDC101_4h_R1 2 RSHSPSIDGTPK 12 1 A0A0C4DH56;Q9BWT3-2;Q9BWT3 A0A0C4DH56 PAPOLG Poly(A) polymerase gamma 1 0 RS(0.736)HS(0.263)PSIDGTPK;RS(0.71)HS(0.29)PSIDGTPK ; 74.296 0.025117 12828500 5717.3 5365 4966.8 5318.9 5745.4 5639.6 5346.1 4856 5618.1 5793.8 TRUE FALSE FALSE 5047.126761 5530.289291 5235.320232 5535.827732 5321.573288 5532.034026 5552.300868 5408.787411 5386.51954 5759.33822 0.876337969 0.960229992 0.909014201 0.961191637 0.923990411 0.960532932 0.964051885 0.939133492 0.935267097 1 12.49168733 -3.161630993 13.67651528 0.942305129 0.946733316 0 0.03266014 0 0 0.005985691 0 0.000689238 3.161630993 0.004428187 TFSATVR ddPTM_HeLa_CUDC101_4h_R1 1 TFSATVR 7 0 H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9;Q9Y2V2 H3BTK3 CARHSP1 Calcium-regulated heat stable protein 1 0 0 115.46 0.0014282 0 4490.8 3927.2 4091.3 4047.2 4261.1 4307.8 3655.2 3894.6 4103.1 3996.3 FALSE FALSE TRUE 3964.395232 4048.192377 4312.488054 4212.262309 3946.767142 4225.635892 3796.182288 4337.945521 3933.968481 3972.52983 0.997952288 1.019046439 1.085577261 1.060347559 0.993514791 1.063714075 0.955608252 1.091985638 0.990293 1 11.95584234 -6.999831376 24.99970716 0.999531251 1.038752129 0.214404182 0.038940005 7.323655367 1085539.859 0.005803146 0.007583341 1.00E-07 6.999831376 0.039220878 TFSEVLAEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TFSEVLAEKK 10 1 O75152;E9PBY7;E9PQ61 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 0 1 ; TFSEVLAEK(1)K;TFSEVLAEK(1)K 128.81 5.59E-06 300270 584.8 306.28 351.28 335.76 425.21 325.92 290.76 472.98 205.73 302.41 FALSE TRUE FALSE 516.2506305 315.7161238 370.2712594 349.4537441 393.8431054 319.703619 301.9747106 526.8221313 197.2497223 300.6112519 1.717336351 1.050247194 1.231727878 1.162477259 1.310140931 1.063511818 1.004535621 1.752503035 0.65616214 1 8.2317552 TFSVWYVPEVTGTHK ddPTM_HeLa_CUDC101_4h_R1 1 TFSVWYVPEVTGTHK 15 0 P21333-2;P21333;Q60FE5;A0A087WWY3;F8WE98 P21333-2 FLNA Filamin-A 0 0 162.88 8.53E-05 1156800 1174 671.94 936.11 1073 980.29 957.45 1154.4 1098.5 1047.1 1406.3 FALSE FALSE TRUE 1036.3855 692.641675 986.7189382 1116.761578 907.9759597 939.1882365 1198.925595 1223.5488 1003.938095 1397.935265 0.741368735 0.495474785 0.705840222 0.798865016 0.649512164 0.671839577 0.857640282 0.875254263 0.718157786 1 10.44908184 -8.885734903 0.905465609 0.988218712 0.722746815 0 0.133547962 0.364825186 0.579257873 0.056721762 0.022011809 1.30E-09 8.885734903 -0.265471897 TFVQEDIYDEFVER ddPTM_HeLa_CUDC101_4h_R1 3 TFVQEDIYDEFVER 14 0 S4R3S4;P05091-2;P05091 S4R3S4 ALDH2 "Aldehyde dehydrogenase, mitochondrial" 0 0 ;; ;; 210.91 4.96E-23 14417900 4285.4 3851.7 3159.82 3433.38 4028.73 3578.5 3213.49 3134.85 4355.7 3490.13 FALSE FALSE TRUE 3783.071908 3970.366312 3330.649427 3573.408077 3731.538614 3510.246075 3337.435386 3491.708652 4176.156202 3469.370552 1.090420251 1.144405376 0.960015478 1.029987435 1.075566463 1.011781827 0.96197144 1.006438661 1.20372158 1 11.76045822 -5.0145803 6.784801414 1.045960598 0.984571294 0.153430805 0.069410849 0.186777579 42.70331178 0.007573218 0.02091265 9.67E-06 5.0145803 -0.061389304 APVSGSRS(ph)PDREASGSGGR ddPTM_HeLa_CUDC101_4h_R1 1 APVSGSRSPDREASGSGGR 19 2 Q8N5F7 Q8N5F7 NKAP NF-kappa-B-activating protein 1 0 APVS(0.003)GS(0.003)RS(0.99)PDREAS(0.003)GS(0.001)GGR 60.272 0.027563 29682000 308.57 234.94 179.26 170.1 424.71 291.66 274.25 295.37 298.92 321.92 TRUE FALSE FALSE 272.3998924 242.1782229 188.9513378 177.0374132 393.3799894 286.0970714 284.8279144 328.9937269 286.5983911 320.0052055 0.851235816 0.756794636 0.590463326 0.553232917 1.22929247 0.894038805 0.890072753 1.028088672 0.895605403 1 8.321951563 -3.159413056 0.858334857 0.879940432 1.746193468 0.059245926 0.185115098 37.66465831 4.873607882 0.031332783 48.01021177 0.000692767 3.159413056 0.866253036 TFYEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 TFYEKR 6 1 P62753;A2A3R7 P62753 RPS6 40S ribosomal protein S6 0 1 TFYEK(1)R 102.72 0.018802 6903900 5147.7 5281.7 4928.4 5017 6078.6 4941.9 4274.8 3357.3 6021.6 4566 FALSE TRUE FALSE 4544.294409 5444.422917 5194.844212 5221.614945 5630.193788 4847.641491 4439.680468 3739.481461 5773.387099 4538.841229 1.001201448 1.199518256 1.144530939 1.150429081 1.240447397 1.068035044 0.978152847 0.823884616 1.271995826 1 12.14810831 -1.000015832 24.99986106 1.040902096 8.01E-06 0 0.140048634 0 0 0.01695149 0 0.099996355 1.000015832 -1.040894083 TGAAGK(ac)FK ddPTM_HeLa_CUDC101_4h_R1 1 TGAAGKFK 8 1 P39748;P39748-2 P39748 FEN1 Flap endonuclease 1 0 1 TGAAGK(1)FK 103.56 0.010397 29108000 3012.9 2255.7 1865.7 7808.6 6290.9 7355.9 7666.1 5883.5 515.61 313.29 FALSE TRUE FALSE 2659.732429 2325.195443 1966.565385 8127.06846 5826.83284 7215.598463 7961.784045 6553.253858 494.3563376 311.4265371 8.540481019 7.466272671 6.314700743 26.09626185 18.71013592 23.16950421 25.56552861 21.04269571 1.587393104 1 8.282748074 -6.290126492 8.29557376 5.023628697 22.84432841 0.902994419 2.939193336 0.073875772 19.67330324 0.541231136 0.834727463 5.13E-07 6.290126492 17.82069971 T(ph)SPDPSPVSAAPSK ddPTM_HeLa_CUDC101_4h_R1 1 TSPDPSPVSAAPSK 14 0 Q13469-3;Q13469-4;Q13469-2;Q13469;Q13469-5 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 0 T(0.592)S(0.408)PDPSPVSAAPSK 143.46 0.0020275 15904000 3305 3185.1 2908.7 2811.6 3192.5 2710 2725.9 2133.1 3201.8 2935.3 TRUE FALSE FALSE 2917.59291 3283.229156 3065.95312 2926.269201 2956.995635 2658.311265 2831.038876 2375.923482 3069.820449 2917.840705 0.999915076 1.125225633 1.050760967 1.002888607 1.013419146 0.911054281 0.970251348 0.814274569 1.052086375 1 11.51068541 -3.157078729 0.752334291 1.014061885 3.18E-11 0.653121821 0.047149591 5.971399819 0.692908063 0.007776699 7.542745933 0.0006965 3.157078729 -1.014061885 TGDK(ac)ECPFFIK ddPTM_HeLa_CUDC101_4h_R1 2 TGDKECPFFIK 11 1 C9J6V2;Q8TA86 C9J6V2 RP9 Retinitis pigmentosa 9 protein 0 1 ; TGDK(1)ECPFFIK;TGDK(1)ECPFFIK 147.72 0.00013883 1141840 571.8 316.27 438.95 379.64 556.2 406.29 605.18 580.45 406.37 313.571 FALSE TRUE FALSE 504.7744708 326.0139038 462.6809648 395.1233601 515.1702341 398.5406952 628.5219953 646.5260817 389.6192566 311.7058657 1.619393557 1.04590237 1.484351164 1.267616056 1.652744753 1.278579388 2.016394506 2.074154364 1.249958052 1 8.284041494 -1 0.332625645 1.237323754 10.46740592 0.616871659 0.218510484 31.34505972 0.397334757 0.082387834 180.7882692 0.1 1 9.230082165 SVSSS(ph)SYR ddPTM_HeLa_CUDC101_4h_R1 2 SVSSSSYR 8 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SVS(0.186)S(0.186)S(0.314)S(0.314)YR;SVS(0.12)S(0.322)S(0.556)S(0.002)YR ; 108.57 0.012259 194688000 8382.9 6285.2 8191 8894.5 7447.8 6375.1 6422.2 4778.4 7663.6 9415.6 TRUE FALSE FALSE 7400.26917 6478.839562 8633.830236 9257.256155 6898.390632 6253.505589 6669.906405 5322.353741 7347.703164 9359.595592 0.790661209 0.692213622 0.922457616 0.989065827 0.737039391 0.668138439 0.712627628 0.568652106 0.78504494 1 13.19223048 -3.15617127 0.075088371 1.239968575 5.95E-18 0.290110144 0.114096137 84.88051704 0.749853698 2.958482726 12.21329645 0.000697957 3.15617127 -1.239968575 VEAPSLDVHMDS(ph)PDINIEGPDVK ddPTM_HeLa_CUDC101_4h_R1 6 VEAPSLDVHMDSPDINIEGPDVK 23 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VEAPSLDVHMDS(1)PDINIEGPDVK;VEAPS(0.013)LDVHMDS(0.987)PDINIEGPDVK;VEAPSLDVHMDS(1)PDINIEGPDVK;VEAPSLDVHMDS(1)PDINIEGPDVK;VEAPSLDVHMDS(1)PDINIEGPDVK;VEAPSLDVHMDS(1)PDINIEGPDVK ;;;;; 98.98 6.05E-05 167147000 20153.9 14906.1 13904.4 14026.7 17004.1 16877.7 13748 8378 17158.2 17635.9 TRUE FALSE FALSE 17791.49039 15365.33927 14656.11392 14598.76945 15749.74142 16555.78599 14278.26497 9331.717655 16450.93173 17531.00088 1.014858793 0.876466745 0.836011248 0.832740216 0.898393738 0.944371979 0.81445806 0.532298054 0.938390902 1 14.09762074 -3.152413522 0.339684416 1.005458087 1.06E-23 0.596874989 0.082441345 6.305790178 0.288174427 0.028105262 3.045039406 0.000704022 3.152413522 -1.005458087 NTSLPPLWS(ph)PEAER ddPTM_HeLa_CUDC101_4h_R1 4 NTSLPPLWSPEAER 14 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER ;;; 186.98 4.50E-11 254582000 19960.1 17685.8 15766.4 15166.8 17701.6 15711.6 13500.9 10946.6 17095.6 17766.9 TRUE FALSE FALSE 17620.40734 18230.67854 16618.77927 15785.36766 16395.78823 15411.92741 14021.63424 12192.7167 16390.91213 17661.22169 0.997689041 1.032243344 0.940975634 0.893786848 0.928349608 0.872642203 0.793922101 0.690366551 0.928073517 1 14.10829752 -3.150158893 0.414618714 1.004620757 1.54E-11 0.873017462 0.034856198 1.91356002 0.11226169 0.006361034 1.164266005 0.000707687 3.150158893 -1.004620757 GQTPLTEGS(ph)EDLDGHSDPEESFAR ddPTM_HeLa_CUDC101_4h_R1 1 GQTPLTEGSEDLDGHSDPEESFAR 24 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 1 0 GQT(0.018)PLT(0.31)EGS(0.657)EDLDGHS(0.016)DPEESFAR 113.42 3.03E-07 17151000 1030.7 967.38 891.36 889.25 1046.2 1403.5 1503.1 2347.6 1107.8 931.19 TRUE FALSE FALSE 909.8829084 997.1838312 939.5496178 925.5174587 969.0239103 1376.730576 1561.075071 2614.841295 1062.136015 925.6512405 0.982965148 1.077278123 1.015014702 0.999855473 1.046856384 1.487310248 1.686461382 2.824866624 1.147447298 1 9.854324918 -3.145359617 0.770067393 0.992498134 11.15750467 0.975827547 0.085174777 0.869943834 0.10141547 0.01044438 11.38678495 0.000715551 3.145359617 10.16500654 up TGEEDEEEFFCNR ddPTM_HeLa_CUDC101_4h_R1 1 TGEEDEEEFFCNR 13 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 0 0 135.8 0.0049842 11420000 849.7 665.36 798.21 808.32 740.34 656.83 756.38 733.14 859.76 682.12 FALSE FALSE TRUE 750.0994541 685.858953 841.3636471 841.2867835 685.7265932 644.3020621 785.55383 816.5976941 824.3203289 678.0627199 1.106239043 1.011497805 1.240834546 1.240721188 1.011302602 0.950210125 1.158526795 1.20430997 1.215699234 1 9.405274917 -9.01348248 0.578210555 0.988905536 1.116672494 0 0.116020707 1.605097781 0.878581421 0.10641804 0.024475857 9.69E-10 9.01348248 0.127766958 S(ph)SPPLR ddPTM_HeLa_CUDC101_4h_R1 1 SSPPLR 6 0 A0A0A6YYC0;E9PJN1;O75676-2;O75676 A0A0A6YYC0 RPS6KA4 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-4 1 0 S(0.992)S(0.008)PPLR 113.5 0.019555 37523000 1659.6 955.74 1513 1705.6 1507.9 1511.5 1222.4 579.84 1191.4 1848.9 TRUE FALSE FALSE 1465.064204 985.1852166 1594.797357 1775.16174 1396.665221 1482.670656 1269.548377 645.8466418 1142.289988 1837.902661 0.797139171 0.536037755 0.867726779 0.965862762 0.75992339 0.806718815 0.690759312 0.351404161 0.621518219 1 10.84384464 -3.144697337 0.111345382 1.108439251 1.32E-25 0.045192641 0.18335692 50.46549663 0.661567371 1.111803462 8.59765698 0.000716643 3.144697337 -1.108439251 GAGATSGS(ph)PPAGR ddPTM_HeLa_CUDC101_4h_R1 4 GAGATSGSPPAGR 13 0 B4DEE8;P16455 B4DEE8 MGMT Methylated-DNA--protein-cysteine methyltransferase 1 0 GAGAT(0.002)S(0.007)GS(0.991)PPAGR;GAGAT(0.014)S(0.082)GS(0.904)PPAGR;GAGAT(0.001)S(0.008)GS(0.991)PPAGR;GAGAT(0.001)S(0.007)GS(0.993)PPAGR ;;; 131.79 0.0010377 181736700 12482.6 10314.5 10586 11485 9600.2 9713.2 8188 6491.1 10802.3 12848.6 TRUE FALSE FALSE 11019.40855 10632.27752 11158.31118 11953.40794 8892.012372 9527.936893 8503.813903 7230.020586 10357.02462 12772.17596 0.862766735 0.832456236 0.873642144 0.935894399 0.696201838 0.745991672 0.665807763 0.566075868 0.810905257 1 13.64071671 -3.144231886 0.227412905 0.986755633 4.10E-14 0.659965497 0.072694623 5.783738171 0.16247211 0.045724622 1.749133983 0.000717411 3.144231886 -0.986755633 AVPPVS(ph)PELR ddPTM_HeLa_CUDC101_4h_R1 4 AVPPVSPELR 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 AVPPVS(1)PELR;AVPPVS(1)PELR;AVPPVS(1)PELR;AVPPVS(1)PELR ;;; 152.67 0.00030915 528225000 19952.7 18800.5 17761.4 17708.4 19697.5 18558.2 14713.6 12380.8 21136 20870.9 TRUE FALSE FALSE 17613.87475 19379.72112 18721.63501 18430.62509 18244.45467 18204.23326 15281.10848 13790.18023 20264.76513 20746.75896 0.848994042 0.934108366 0.902388419 0.888361654 0.879388183 0.877449499 0.736554009 0.66469082 0.976767753 1 14.34059836 -3.143408258 0.471554588 0.932841002 3.21E-33 0.826742523 0.040427457 4.682390252 0.320978192 0.011887487 3.083987787 0.000718773 3.143408258 -0.932841002 GPPS(ph)PPAPVMHS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 3 GPPSPPAPVMHSPSR 15 0 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 2 0 GPPS(1)PPAPVMHS(0.861)PS(0.139)R;GPPS(1)PPAPVMHS(0.961)PS(0.039)R;GPPS(1)PPAPVMHS(0.962)PS(0.038)R ;; 99.846 0.018907 345375000 4901.9 4617.5 4650.7 4131.8 4785.9 4954.7 4890.9 4546.2 5171.2 5348.4 TRUE FALSE FALSE 4327.306713 4759.759702 4902.13091 4300.312663 4432.853692 4860.197353 5079.543651 5063.721032 4958.040947 5316.587479 0.813925611 0.895265943 0.922044625 0.808848285 0.833778003 0.914157318 0.95541429 0.952438204 0.932560776 1 12.37628481 -3.139148081 17.49128827 0.903531398 0.893816123 0 0.061332046 0 0 0.010519311 0 0.000725858 3.139148081 -0.009715275 SPSDLHIS(ph)PLAK ddPTM_HeLa_CUDC101_4h_R1 1 SPSDLHISPLAK 12 0 B9EGQ5;A0A669KBG4;M0QXA7;A0A669KBH9;A0A2R8YFV2;A0A669KAV7;O95785-4;O95785-3;O95785;O95785-2 B9EGQ5 WIZ Protein Wiz 1 0 S(0.006)PS(0.011)DLHIS(0.983)PLAK 94.688 0.016038 17916000 1220.7 860.21 949.01 956.86 1168.8 889.47 938.45 432.1 1242.4 1257.4 TRUE FALSE FALSE 1077.611396 886.7120505 1000.316351 995.8848867 1082.579953 872.5048417 974.6463309 481.2885174 1191.187746 1249.920929 0.862143654 0.709414516 0.800303706 0.79675831 0.86611875 0.69804803 0.77976639 0.385055171 0.953010481 1 10.28762112 -3.137932893 0.160541929 1.041085158 1.92E-16 0.617507337 0.099841232 15.56947445 0.297572996 0.210105783 3.462379427 0.000727892 3.137932893 -1.041085158 TGIVAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 TGIVAKK 7 1 Q9BQ61 Q9BQ61 C19orf43 Uncharacterized protein C19orf43 0 1 TGIVAK(1)K 86.953 0.036191 9668400 4594.5 5245.3 4915.7 4973 5481.4 4769.6 4784.8 4963.5 4428.6 4913.2 FALSE TRUE FALSE 4055.939675 5406.901476 5181.457611 5175.820435 5077.048042 4678.627827 4969.351339 5528.524777 4246.051234 4883.976068 0.830458548 1.107069609 1.060909705 1.059755487 1.03953172 0.9579547 1.01748069 1.131972127 0.86938412 1 12.25384042 -7.252916461 24.9589904 0.919938758 1.048448246 0.566172304 0.060741842 473.9130673 1387833.69 0.012706856 0.015429416 5.59E-08 7.252916461 0.128509488 SAGGSSPEGGEDS(ph)DREDGNYCPPVKR ddPTM_HeLa_CUDC101_4h_R1 3 SAGGSSPEGGEDSDREDGNYCPPVKR 26 2 B7Z7F3;Q9H6Z4-3;Q9H6Z4-2;Q9H6Z4;K7EID7;K7ENB9 B7Z7F3 RANBP3 Ran-binding protein 3 1 0 S(0.004)AGGS(0.034)S(0.077)PEGGEDS(0.706)DREDGNY(0.179)CPPVKR;SAGGS(0.026)S(0.006)PEGGEDS(0.969)DREDGNYCPPVKR;SAGGS(0.044)S(0.01)PEGGEDS(0.946)DREDGNYCPPVKR ;; 108.99 1.27E-07 197483000 5671.1 4768.2 5345.9 5105.7 5917.8 4375.32 4293.23 4255.78 5117.5 4306 TRUE FALSE FALSE 5006.342255 4915.10259 5634.915524 5313.932515 5481.255684 4291.868061 4458.821319 4740.240793 4906.554484 4280.38772 1.169600182 1.148284434 1.316449792 1.241460555 1.280551212 1.00268208 1.041686317 1.107432574 1.146287394 1 12.06352577 -3.13588919 13.92269634 1.117180602 1.13363084 0 0.109106258 0 0 0.016784508 0 0.000731326 3.13588919 0.016450238 TGLYNYYDDEKEK ddPTM_HeLa_CUDC101_4h_R1 2 TGLYNYYDDEKEK 13 1 P50454;E9PR70;E9PPV6;E9PKH2 P50454 SERPINH1 Serpin H1 0 0 ; ; 120.9 0.0026465 93117000 3675.2 2908.6 3831.4 3115.1 4439.1 3933.6 3695.8 4479.4 3253.6 4047.1 FALSE FALSE TRUE 3244.398627 2998.210518 4038.537073 3242.147243 4111.636437 3858.573134 3838.348244 4989.31679 3119.485231 4023.027669 0.806456951 0.745262217 1.003855157 0.805897326 1.022025394 0.959121699 0.954094418 1.240189529 0.775407352 1 11.97406595 -1.000002858 0.892209996 0.899638829 158.2412271 0.54149389 0.096984788 551.0425805 1.194787432 0.015705838 176521.3443 0.099999342 1.000002858 157.3415883 EAADLDAVPMSLS(ph)YEELVR ddPTM_HeLa_CUDC101_4h_R1 3 EAADLDAVPMSLSYEELVR 19 0 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;H0YC55 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 EAADLDAVPMS(0.253)LS(0.737)Y(0.009)EELVR;EAADLDAVPMS(0.035)LS(0.965)YEELVR;EAADLDAVPMS(0.039)LS(0.961)YEELVR ;; 227.64 1.20E-33 16874000 5932.4 5121 4417.6 4768.5 4828.5 4817.8 3925.5 3098.93 5189.4 5342.2 TRUE FALSE FALSE 5237.013065 5278.77194 4656.428819 4962.980041 4472.311175 4725.908492 4076.90785 3451.699665 4975.490736 5310.424357 0.986176003 0.994039569 0.87684684 0.934573154 0.842175855 0.889930479 0.767717903 0.649985657 0.936929029 1 12.37461144 -3.135809311 0.365443326 1.000541168 1.43E-17 0.856889497 0.039916663 2.445427663 0.121338247 0.009535476 1.282086026 0.00073146 3.135809311 -1.000541168 T(ph)S(ph)ALPGET(ph)QRRL ddPTM_HeLa_CUDC101_4h_R1 1 TSALPGETQRRL 12 2 J3QLL8;Q8N584-3 J3QLL8 TTC39C Tetratricopeptide repeat protein 39C 3 0 T(1)S(1)ALPGET(1)QRRL 87.641 0.029168 13107000 1350.6 1340.3 1290.9 1117.4 1404.2 1372 1014 1076.7 1405.1 1186.1 TRUE FALSE FALSE 1192.284715 1381.593054 1360.689959 1162.972402 1300.614964 1345.831386 1053.11032 1199.267176 1347.181183 1179.045024 1.011229165 1.171789903 1.154061067 0.986368101 1.103108818 1.141458857 0.893189232 1.017151297 1.14260368 1 10.2034031 -3.132963926 14.10855093 1.032084302 1.044006198 0 0.093105821 0 0 0.011701449 0 0.000736268 3.132963926 0.011921896 TGPAVAK(ac)AQAGK ddPTM_HeLa_CUDC101_4h_R1 2 TGPAVAKAQAGK 12 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 0 1 ; TGPAVAK(1)AQAGK;TGPAVAK(1)AQAGK 162.38 1.35E-05 4193400 2729.6 2349.82 3584.9 4125.2 4733.3 4884.8 3785.3 3869.1 1298.17 973.4 FALSE TRUE FALSE 2409.640426 2422.215169 3778.710538 4293.443487 4384.133889 4791.630579 3931.300289 4309.542705 1244.658883 967.6101735 2.490300838 2.503296509 3.905199264 4.437162407 4.530888584 4.952025836 4.062896812 4.453800531 1.286322651 1 9.918282128 -7.212967119 0.538259219 1.21188741 4.720606976 0.92846457 0.362935112 0.149379448 0.099618804 0.147362793 0.181702802 6.12E-08 7.212967119 3.508719566 T(ph)PTAPAVNLAGAR ddPTM_HeLa_CUDC101_4h_R1 2 TPTAPAVNLAGAR 13 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 T(0.999)PT(0.001)APAVNLAGAR;T(0.999)PT(0.001)APAVNLAGAR ; 126.56 0.0073515 126186000 888.29 655.98 747.59 620.11 724.29 684.7 715.2 381.47 638.62 905.58 TRUE FALSE FALSE 784.1659928 676.1899663 788.0069767 645.4007661 670.8605697 671.6404883 742.7855036 424.8950028 612.2958133 900.1935699 0.871108192 0.751160627 0.875375034 0.716957761 0.745240348 0.746106738 0.825139757 0.472004041 0.680182389 1 9.814091449 -3.132354187 0.102325926 1.169699341 4.78E-14 0.06749976 0.129001659 28.76108925 0.344901634 0.722117102 4.833365592 0.000737303 3.132354187 -1.169699341 LDNVPHTPSS(ph)YIETLPK ddPTM_HeLa_CUDC101_4h_R1 3 LDNVPHTPSSYIETLPK 17 0 Q99733;Q99733-2;E9PNJ7;C9J6D1;A8MXH2;E9PS34;E9PNW0;E9PJJ2;E9PP22;E9PKI2 Q99733 NAP1L4 Nucleosome assembly protein 1-like 4 1 0 LDNVPHT(0.006)PS(0.433)S(0.558)YIET(0.002)LPK;LDNVPHT(0.156)PS(0.366)S(0.455)Y(0.013)IET(0.011)LPK;LDNVPHTPS(0.149)S(0.848)YIET(0.003)LPK ;; 177.67 1.52E-07 59834000 8451.5 5377.2 5824.3 5666.2 8439.9 6807.8 7066.7 6318.8 6112 7010.8 TRUE FALSE FALSE 7460.827982 5542.865158 6139.179276 5897.292127 7817.305392 6677.952558 7339.264986 7038.106651 5860.060773 6969.09945 1.070558404 0.795348839 0.880914287 0.846205764 1.121709548 0.958223169 1.053115261 1.009901882 0.840863416 1 12.76675653 -3.131690629 13.44998743 0.998778506 0.979589853 0 0.113348161 0 0 0.01419064 0 0.00073843 3.131690629 -0.019188653 IASPVS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 IASPVSR 7 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 1 0 IAS(0.251)PVS(0.749)R 90.601 0.032744 114510000 1902.3 1688.6 1652.5 1605.4 1887.7 1437.1 1309.6 1060.8 1689 1947.6 TRUE FALSE FALSE 1679.315278 1740.623765 1741.839149 1670.875151 1748.448132 1409.689712 1360.111711 1181.557184 1619.378705 1936.015589 0.867407932 0.899075284 0.89970306 0.863048397 0.903116763 0.728139649 0.702531384 0.610303549 0.836449208 1 10.91887485 -3.129711105 0.31752577 0.957382279 2.60E-15 0.768153635 0.053028874 3.97908667 0.165270531 0.018188861 1.698954541 0.000741804 3.129711105 -0.957382279 GMDS(ph)EDDLRDEVEDAVQK ddPTM_HeLa_CUDC101_4h_R1 1 GMDSEDDLRDEVEDAVQK 18 1 Q5T2D3 Q5T2D3 OTUD3 OTU domain-containing protein 3 1 0 GMDS(1)EDDLRDEVEDAVQK 71.042 0.010146 5751600 4300.7 3029.6 3332.7 3201.9 3525.6 3266 2719.9 2123 3748.9 3734.8 TRUE FALSE FALSE 3796.578465 3122.938385 3512.875843 3332.487322 3265.523512 3203.706492 2824.807454 2364.673739 3594.368755 3712.585243 1.022623917 0.84117621 0.946207457 0.897619072 0.879582097 0.86293143 0.760873426 0.63693453 0.968157906 1 11.85820844 -3.124851457 0.327182641 1.015180406 4.05E-15 0.817961055 0.047174823 3.61994596 0.155613808 0.016673727 1.697456165 0.000750151 3.124851457 -1.015180406 EAPAEGEAAEPGSPTAAEGEAASAASS(ph)TSSPK ddPTM_HeLa_CUDC101_4h_R1 1 EAPAEGEAAEPGSPTAAEGEAASAASSTSSPK 32 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 EAPAEGEAAEPGSPTAAEGEAAS(0.001)AAS(0.163)S(0.643)T(0.163)S(0.024)S(0.007)PK 144.82 7.58E-20 0 1391.4 1196.1 893.04 1050.5 1171.6 1256.1 1219.9 1237.5 1118 1214.4 TRUE FALSE FALSE 1228.302201 1232.950423 941.3204437 1093.343931 1085.173402 1232.141985 1266.951952 1378.371998 1071.915567 1207.176695 1.017499929 1.021350419 0.779770226 0.905703312 0.898935017 1.020680726 1.049516576 1.141814619 0.887952502 1 10.23742114 -3.118916341 14.61718291 0.991316682 1.086398695 0 0.099931061 0 0 0.012807333 0 0.000760473 3.118916341 0.095082012 MALVS(ph)ADSR ddPTM_HeLa_CUDC101_4h_R1 1 MALVSADSR 9 0 Q96ES7;H3BPL5 Q96ES7 CCDC101 SAGA-associated factor 29 homolog 1 0 MALVS(1)ADSR 82.305 0.039523 88722000 4500.2 3739 3970.5 3748.4 4597.8 4121.9 3945.4 3813.6 4289.6 3921.4 TRUE FALSE FALSE 3972.693378 3854.194158 4185.15724 3901.275954 4258.629454 4043.281625 4097.5754 4247.724809 4112.780872 3898.075338 1.019142277 0.98874286 1.073647089 1.000821076 1.09249542 1.037250765 1.051179119 1.089697977 1.055079883 1 11.92854626 -3.116758606 0.196352913 0.994453413 1.19962024 0.203266384 0.032069736 14.60817471 0.344522864 0.029082316 0.786483414 0.00076426 3.116758606 0.205166827 NDS(ph)SCT(ph)EALYNIGLT(ph)Y(ph)EK ddPTM_HeLa_CUDC101_4h_R1 1 NDSSCTEALYNIGLTYEK 18 0 F5H6C2;Q13099-3;Q13099;Q13099-1 F5H6C2 IFT88 Intraflagellar transport protein 88 homolog 4 0 NDS(0.548)S(0.548)CT(0.903)EALY(0.337)NIGLT(0.842)Y(0.82)EK 42.314 0.036978 1370000 1016.3 1065.7 1004.4 695.99 1199.5 1069.1 999.8 1077.6 982.15 1034.4 TRUE FALSE FALSE 897.1708546 1098.532954 1058.700902 724.3754805 1111.015275 1048.708699 1038.362621 1200.269628 941.6653613 1028.247343 0.87252436 1.06835477 1.029616959 0.704475908 1.080494185 1.019899255 1.009837398 1.167296601 0.915796542 1 10.00597163 -3.113119328 0.726025422 0.945526476 2.10494171 0.275681732 0.104042926 12.04983589 1.280845435 0.01707942 16.86950068 0.000770692 3.113119328 1.159415234 MSPNET(ph)LFLESTNKIYK ddPTM_HeLa_CUDC101_4h_R1 1 MSPNETLFLESTNKIYK 17 1 Q9HB90 Q9HB90 RRAGC Ras-related GTP-binding protein C 1 0 MS(0.013)PNET(0.879)LFLES(0.093)T(0.015)NKIYK 81.311 0.013339 27569000 456.16 619.21 422.39 408.02 686.01 641.16 666.33 874.06 366.33 575 TRUE FALSE FALSE 402.6896163 638.2871262 445.2256811 424.6608192 635.404409 628.9309412 692.0305713 973.5594573 351.2297223 571.5798744 0.704520285 1.116706789 0.778938694 0.742959713 1.111663369 1.100337799 1.210732922 1.703278056 0.614489309 1 9.158811309 -3.111133367 0.671566721 0.866756457 4.949026342 0.745632091 0.153419156 4.347431153 0.429345845 0.025298455 19.44197775 0.000774224 3.111133367 4.082269885 YS(ph)DDGNRETDEK ddPTM_HeLa_CUDC101_4h_R1 2 YSDDGNRETDEK 12 1 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 0 Y(0.001)S(0.999)DDGNRETDEK;YS(1)DDGNRETDEK ; 96.707 0.0080653 44742000 8081.9 5955.6 5302.4 6507.4 5872.2 6531.8 5240.7 4233.2 6447 6096.1 TRUE FALSE FALSE 7134.551933 6139.084977 5589.063783 6772.799899 5439.019505 6407.216798 5442.835555 4715.090377 6181.251931 6059.840126 1.177349862 1.013077053 0.922312085 1.117653232 0.89755165 1.057324395 0.898181378 0.778088246 1.02003548 1 12.56506402 -3.108303628 0.505184934 1.072948609 1.99E-14 0.45194626 0.082401876 7.485509752 0.542229206 0.018534694 6.207686081 0.000779285 3.108303628 -1.072948609 (ac)SCINLPTVLPGS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 4 SCINLPTVLPGSPSK 15 0 K7ERV3;P04183;K7ENW5;K7ES52;K7ERJ1 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 0 SCINLPTVLPGS(0.5)PS(0.5)K;SCINLPTVLPGS(0.937)PS(0.063)K;S(0.001)CINLPT(0.002)VLPGS(0.829)PS(0.168)K;SCINLPTVLPGS(0.869)PS(0.131)K ;;; 118.55 4.21E-05 168408000 16924.7 15217 14720.6 13940.8 16110 14234.4 12254.9 10338.5 17120.8 11627.4 TRUE FALSE FALSE 14940.81232 15685.81773 15516.44016 14509.36608 14921.5974 13962.90254 12727.5756 11515.39305 16415.07338 11558.23971 1.292654652 1.357111302 1.342457031 1.255326628 1.290992208 1.208047496 1.101169029 0.996292977 1.420205307 1 13.49663408 -3.101505332 13.95022239 1.179325204 1.180662678 0 0.14829838 0 0 0.021128984 0 0.00079158 3.101505332 0.001337475 TYSAPAINAIQGGS(ph)FESPKKEK ddPTM_HeLa_CUDC101_4h_R1 1 TYSAPAINAIQGGSFESPKKEK 22 2 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 0 TYSAPAINAIQGGS(0.931)FES(0.069)PKKEK 88.945 0.00043952 22423000 1971.8 2939.4 2167.7 2777.5 2443.8 1989.5 1853.9 1441.9 1725 2006.8 TRUE FALSE FALSE 1740.668593 3029.95943 2284.892419 2890.778455 2263.525743 1951.553602 1925.405544 1606.040068 1653.89477 1994.863464 0.872575304 1.518880607 1.145387872 1.449110933 1.134677026 0.97828931 0.965181617 0.805087715 0.829076676 1 10.96207429 -3.101023932 14.07343689 1.029497106 1.031990075 0 0.237243891 0 0 0.032669513 0 0.000792458 3.101023932 0.002492969 TPDSEDKLFS(ph)PVIAR ddPTM_HeLa_CUDC101_4h_R1 1 TPDSEDKLFSPVIAR 15 1 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7;X6RAE7;X6R5W5 Q5VZ89-5 DENND4C DENN domain-containing protein 4C 1 0 T(0.002)PDS(0.018)EDKLFS(0.98)PVIAR 58.268 0.040608 15078000 3918.5 3117.7 2950.6 3060.6 3192.6 3286.3 2545.5 2098.2 3290.1 3377.5 TRUE FALSE FALSE 3459.17937 3213.752642 3110.118361 3185.424497 2957.088259 3223.619303 2643.680788 2337.050607 3154.480685 3357.41048 1.030311721 0.957211714 0.926344389 0.948774216 0.880764588 0.960150486 0.787416613 0.696087244 0.939557646 1 11.71313322 -3.099346989 0.413370858 1.012566838 1.34E-15 0.781307342 0.044740873 3.133183189 0.177094784 0.009781264 1.933309427 0.000795523 3.099346989 -1.012566838 GTQSTEGS(ph)PVSK ddPTM_HeLa_CUDC101_4h_R1 4 GTQSTEGSPVSK 12 0 A0A087WXK8;Q9H4H8-2;Q9H4H8 A0A087WXK8 FAM83D Protein FAM83D 1 0 GTQSTEGS(0.781)PVS(0.219)K;GTQSTEGS(0.887)PVS(0.112)K;GTQSTEGS(0.999)PVS(0.001)K;GTQS(0.001)T(0.001)EGS(0.995)PVS(0.003)K ;;; 178.22 2.30E-07 102973000 12396.6 7975.7 12111.5 12578.4 11523.1 9061.9 9550 6254.8 12571.6 13687.7 TRUE FALSE FALSE 10943.48934 8221.421863 12766.28433 13091.40152 10673.06387 8889.059356 9918.346699 6966.821149 12053.39333 13606.28495 0.804296645 0.604237078 0.938263778 0.962158412 0.784421604 0.653305394 0.728953328 0.512029637 0.885869535 1 13.73198559 -3.094048159 0.086095605 1.194040962 7.70E-16 0.406182747 0.119197085 71.24654802 0.710757792 2.092578222 10.74729677 0.000805289 3.094048159 -1.194040962 NNVGERDDDVPADMVAEESGPGAQNS(ph)PYQLR ddPTM_HeLa_CUDC101_4h_R1 2 NNVGERDDDVPADMVAEESGPGAQNSPYQLR 31 1 Q86XK2-4;Q86XK2;Q86XK2-5 Q86XK2-4 FBXO11 F-box only protein 11 1 0 NNVGERDDDVPADMVAEESGPGAQNS(1)PYQLR;NNVGERDDDVPADMVAEESGPGAQNS(1)PYQLR ; 131.96 4.14E-17 11699000 2319.61 1634.16 1959.47 1737.05 2176.98 1572.7 1703.97 1156.78 1979.25 2062.09 TRUE FALSE FALSE 2047.708832 1684.506533 2065.404875 1807.894407 2016.388523 1542.703368 1769.692694 1288.463159 1897.664477 2049.824597 0.998967831 0.821780817 1.007600786 0.881975175 0.983688324 0.752602623 0.863338598 0.628572397 0.9257692 1 11.00128475 -3.093157552 0.374642674 0.999148957 3.01E-14 0.581277085 0.076669667 5.20084943 0.259543661 0.018439948 2.823390019 0.000806942 3.093157552 -0.999148957 SKS(ph)PASVNGTPSSQLSTPK ddPTM_HeLa_CUDC101_4h_R1 2 SKSPASVNGTPSSQLSTPK 19 1 G5E9L9;Q8N568-2;Q8N568 G5E9L9 DCLK2 Serine/threonine-protein kinase DCLK2 1 0 S(0.051)KS(0.856)PAS(0.016)VNGT(0.077)PSSQLSTPK;S(0.243)KS(0.753)PAS(0.004)VNGTPSSQLSTPK ; 134.69 2.52E-05 39356000 7437.3 7110 6388.1 6051.1 6787.7 6226.9 6096.4 4197.2 7017.6 7100.4 TRUE FALSE FALSE 6565.510968 7329.050673 6733.460009 6297.890013 6286.984894 6108.132257 6331.54019 4674.992282 6728.331558 7058.166505 0.930200635 1.038378829 0.953995631 0.892284138 0.890739102 0.865399286 0.89705169 0.662352224 0.953269033 1 12.78507775 -3.086139369 0.494729894 0.971878995 1.07E-16 0.771272567 0.046106689 4.323508942 0.300164608 0.009624243 3.182856622 0.000820088 3.086139369 -0.971878995 (ac)MPKYY(ph)EDK ddPTM_HeLa_CUDC101_4h_R1 1 MPKYYEDK 8 1 B9A057;Q86WW8 B9A057 COA5 Cytochrome c oxidase assembly factor 5 1 0 MPKY(0.115)Y(0.885)EDK 53.554 0.0031962 0 515.57 407.33 640.33 432.87 489.14 410.38 470.85 821.51 445.69 653.5 TRUE FALSE FALSE 455.1356662 419.8793545 674.9481767 450.5243096 453.0571167 402.5526852 489.0108422 915.0273777 427.3184696 649.6129529 0.70062591 0.646353113 1.03900049 0.693527288 0.697426236 0.619680817 0.752772616 1.408573172 0.657804725 1 9.343436589 -3.085017923 18.07235226 0.83800044 43.85801441 0 0.239964563 0 0 0.030476651 0 0.000822209 3.085017923 43.02001397 ALS(ph)SSVIR ddPTM_HeLa_CUDC101_4h_R1 1 ALSSSVIR 8 0 Q8NEJ9-2;Q8NEJ9;H0YJ17 Q8NEJ9-2 NGDN Neuroguidin 1 0 ALS(0.333)S(0.333)S(0.333)VIR 132.76 0.0052384 11600000 2074.7 1985.7 1717 1892.7 1688.3 1850.1 1741.2 1205.1 1921.5 1555.7 TRUE FALSE FALSE 1831.506811 2046.877063 1809.826214 1969.892487 1563.757473 1814.812425 1808.358667 1342.283713 1842.294957 1546.446627 1.184332378 1.323600199 1.170312756 1.273818606 1.011193949 1.173537058 1.169363776 0.867979334 1.191308464 1 10.59474133 -3.084837217 11.32273304 1.115769159 0.581568134 0 0.131720635 0 0 0.017932115 0 0.000822551 3.084837217 -0.534201025 EVAATEEDVTRLPS(ph)PT(ph)SPFSSLSQDQAATSK ddPTM_HeLa_CUDC101_4h_R1 1 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 E9PMS6 LMO7 LIM domain only protein 7 2 0 EVAAT(0.091)EEDVT(0.054)RLPS(0.765)PT(0.532)S(0.532)PFS(0.013)S(0.006)LS(0.004)QDQAAT(0.002)S(0.001)K 75.758 2.32E-05 24131000 2421.2 2406.3 1900.9 2090.8 2359.2 2641.4 2166 1984.6 2357.8 2445.9 TRUE FALSE FALSE 2137.390606 2480.435251 2003.668404 2176.071861 2185.166516 2591.019696 2249.543346 2210.518842 2260.610486 2431.351678 0.879095618 1.020187772 0.824096498 0.895004981 0.898745556 1.065670474 0.92522335 0.909172812 0.929775197 1 11.24754287 -3.084049095 13.53472867 0.938546158 0.932682209 0 0.069161227 0 0 0.009537548 0 0.000824045 3.084049095 -0.005863948 DLLSDLQDIS(ph)DSER ddPTM_HeLa_CUDC101_4h_R1 4 DLLSDLQDISDSER 14 0 P21127;P21127-8;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-9;P21127-2;P21127-3;P21127-6;P21127-10;P21127-5;Q9UQ88-9;E7ESP2;J3KS35;Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88 P21127;Q5QPR4 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 0 DLLSDLQDIS(0.999)DS(0.001)ER;DLLSDLQDIS(0.989)DS(0.011)ER;DLLSDLQDIS(0.832)DS(0.168)ER;DLLSDLQDIS(0.973)DS(0.027)ER ;;; 207.79 1.27E-23 19189100 6465.46 6483.9 5371.55 5248.36 5826.4 4892.76 4752.13 3364.97 6350.3 7175.19 TRUE FALSE FALSE 5707.58858 6683.661274 5661.952241 5462.410806 5396.59808 4799.438755 4935.421246 3748.024583 6088.537946 7132.511651 0.800221417 0.937069801 0.793823062 0.765846741 0.756619595 0.672896027 0.691961189 0.525484537 0.853631686 1 12.80019448 -3.079439373 0.138084502 1.05806532 6.50E-15 0.759182415 0.062813484 12.52401472 0.200911891 0.200037945 2.4540807 0.000832838 3.079439373 -1.05806532 ASSSKESPS(ph)PSVR ddPTM_HeLa_CUDC101_4h_R1 1 ASSSKESPSPSVR 13 1 H0Y517;H7C1U3;Q5T0F9-3;Q5T0F9-2;Q5T0F9 H0Y517 CC2D1B Coiled-coil and C2 domain-containing protein 1B 1 0 AS(0.009)S(0.036)S(0.229)KES(0.184)PS(0.481)PS(0.061)VR 64.407 0.037466 65023000 6594.5 5773.4 5887.1 6168.5 5841.6 5371.2 5365.3 3861.8 6330.5 6426.7 TRUE FALSE FALSE 5821.502707 5951.271611 6205.374434 6420.078093 5410.676806 5268.753309 5572.241418 4301.411702 6069.554111 6388.473703 0.911250946 0.931563921 0.971339121 1.004947096 0.846943583 0.824728026 0.8722336 0.673308196 0.950078907 1 12.64125558 -3.077269007 0.484547773 0.962358691 1.12E-12 0.761487222 0.046423225 4.717172707 0.317419864 0.010577329 3.360019202 0.000837011 3.077269007 -0.962358691 (ac)S(ph)GDGATEQAAEYVPEK ddPTM_HeLa_CUDC101_4h_R1 2 SGDGATEQAAEYVPEK 16 0 Q12996;E9PJ06;Q12996-3;Q12996-2 Q12996 CSTF3 Cleavage stimulation factor subunit 3 1 0 S(0.686)GDGAT(0.314)EQAAEYVPEK;S(0.957)GDGAT(0.043)EQAAEYVPEK ; 87.566 1.77E-05 2103400 4369.3 3737.3 3390.7 3762.2 4276.7 4158.6 4083 4275.3 4260.5 3789.4 TRUE FALSE FALSE 3857.137277 3852.441783 3574.011498 3915.638778 3961.216361 4079.281634 4240.482678 4761.982871 4084.880387 3766.86048 1.023966058 1.022719531 0.94880379 1.039496631 1.051596252 1.082939401 1.125733937 1.264178192 1.08442572 1 11.87914688 -3.073882787 0.640669641 1.00812825 2.259348767 0.829518297 0.03356504 2.296366427 0.207928436 0.004094686 2.999301858 0.000843562 3.073882787 1.251220517 NVFSSSGTSFS(ph)GRK ddPTM_HeLa_CUDC101_4h_R1 1 NVFSSSGTSFSGRK 14 1 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 NVFSS(0.012)S(0.036)GT(0.022)S(0.029)FS(0.901)GRK 101.53 0.014102 9030700 1863.7 1622.9 1552.2 1568.3 1734.6 1605.4 1525.6 1049.8 1840.5 1812 TRUE FALSE FALSE 1645.239911 1672.899625 1636.116627 1632.262053 1606.642014 1574.77967 1584.442903 1169.304989 1764.633811 1801.222143 0.913402002 0.928758083 0.90833695 0.906196972 0.891973275 0.874283983 0.879648803 0.649173114 0.979686941 1 10.8147604 -3.072853835 0.500704475 0.955434747 1.59E-72 0.81299581 0.038931311 4.226306427 0.294310371 0.008857208 3.112833876 0.000845563 3.072853835 -0.955434747 S(ph)IDRGLER ddPTM_HeLa_CUDC101_4h_R1 1 SIDRGLER 8 1 A0A0A0MRN0;Q5VTL8 A0A0A0MRN0 PRPF38B Pre-mRNA-splicing factor 38B 1 0 S(1)IDRGLER 72.243 0.03382 9394100 1762.5 1720.2 1560.8 1930.5 2656.3 1985.3 2409.8 2632.4 2056.8 1609.5 TRUE FALSE FALSE 1555.902422 1773.197323 1645.181569 2009.234134 2460.350041 1947.43371 2502.746793 2932.061775 1972.017833 1599.926622 0.972483613 1.108299155 1.028285639 1.255828928 1.5377893 1.217201891 1.564288486 1.832622656 1.232567673 1 10.64379002 -3.072367698 0.336626699 0.962036826 3.48379508 0.731849558 0.139430268 3.591949096 0.155493753 0.036951676 4.357978653 0.00084651 3.072367698 2.521758254 AS(ph)GVAVSDGVIK ddPTM_HeLa_CUDC101_4h_R1 2 ASGVAVSDGVIK 12 0 P23528;E9PP50;E9PS23 P23528 CFL1 Cofilin-1 1 0 AS(1)GVAVSDGVIK;AS(0.999)GVAVS(0.001)DGVIK ; 149.57 0.0006661 119428000 6865.9 5754.1 5016.3 5465.7 5805.2 4759.4 5557.5 3510.5 5083.5 5562.6 TRUE FALSE FALSE 6061.08961 5931.377001 5287.496351 5688.614871 5376.961962 4668.622375 5771.854637 3910.12113 4873.955978 5529.513408 1.096134355 1.072676122 0.956231762 1.02877314 0.972411416 0.844309803 1.043826863 0.707136567 0.881443921 1 12.43293681 -3.065302476 0.515648148 1.043514971 6.10E-14 0.375683623 0.089480254 6.658616041 0.476386084 0.014323543 5.561118324 0.000860394 3.065302476 -1.043514971 NLTEDNS(ph)QNQDLIAK ddPTM_HeLa_CUDC101_4h_R1 1 NLTEDNSQNQDLIAK 15 0 Q9UBB4-2;Q9UBB4;B1AHE3 Q9UBB4-2 ATXN10 Ataxin-10 1 0 NLTEDNS(1)QNQDLIAK 188.71 5.00E-11 7786100 1621.2 1212.3 918.15 1151 1814.4 1366.8 1676.7 1288.3 1227.8 1629.1 TRUE FALSE FALSE 1431.165394 1249.649526 967.7879663 1197.942755 1680.555327 1340.730567 1741.370881 1434.954865 1177.189564 1619.410041 0.883757268 0.771669617 0.597617615 0.739740229 1.037757754 0.827912964 1.075311896 0.8860973 0.726924951 1 10.66125261 -3.057770392 13.06757356 0.902593172 0.652123942 0 0.152093663 0 0 0.020192112 0 0.000875446 3.057770392 -0.250469231 GLPSTSSKEDVT(ph)PPLS(ph)PDDLK ddPTM_HeLa_CUDC101_4h_R1 1 GLPSTSSKEDVTPPLSPDDLK 21 1 Q9Y4B5-2;Q9Y4B5-3;Q9Y4B5;Q9Y4B5-4 Q9Y4B5-2 MTCL1 Microtubule cross-linking factor 1 2 0 GLPS(0.032)T(0.033)S(0.033)S(0.034)KEDVT(0.932)PPLS(0.937)PDDLK 58.272 0.031074 13234000 4236.9 3137 3088.6 3834.4 4057.6 3630 4059.6 3587.2 4141.4 4154.8 TRUE FALSE FALSE 3740.257005 3233.647252 3255.579059 3990.783406 3758.278932 3560.763798 4216.180132 3995.552348 3970.689739 4130.087065 0.905612145 0.782948931 0.788259184 0.966271011 0.909975715 0.862152236 1.02084534 0.967425695 0.961405819 1 12.01195648 -3.054453136 13.92286315 0.930079774 42.05788394 0 0.080119051 0 0 0.011709345 0 0.000882159 3.054453136 41.12780416 GRLGS(ph)VDSFER ddPTM_HeLa_CUDC101_4h_R1 1 GRLGSVDSFER 11 1 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 0 GRLGS(0.998)VDS(0.002)FER 74.853 0.028199 37359000 2976.7 2813.1 2793.6 3129.7 3885.7 3776.7 3962.4 3757.9 2810.5 1578.1 TRUE FALSE FALSE 2627.775738 2899.768277 2944.630466 3257.342694 3599.059652 3704.66574 4115.231095 4185.684146 2694.65 1568.713391 1.675115259 1.848501003 1.877099082 2.076442206 2.294274832 2.361595025 2.6233161 2.66822746 1.717745266 1 10.61536608 -3.052478412 0.092526389 4.70E-13 6.040443428 0.779026512 0.224434243 4.181729425 0.04436906 0.572849722 3.351187245 0.000886179 3.052478412 6.040443428 up TGSGGVASSSESNRDR ddPTM_HeLa_CUDC101_4h_R1 1 TGSGGVASSSESNRDR 16 1 K7EMT0;Q15428 K7EMT0 SF3A2 Splicing factor 3A subunit 2 0 0 103.3 0.0039911 439100 58.011 128.73 185.86 363.07 117.76 97.313 112.5 124.23 0 177.06 FALSE FALSE TRUE 51.21103852 132.6960187 195.9081538 377.8775639 109.0730794 95.45691666 116.8391627 138.371841 0 176.0068392 0.290960503 0.753925355 1.113071257 2.146948184 0.619709324 0.542347769 0.663833083 0.786173092 0 1 7.45948768 MAPALSGANLTS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 MAPALSGANLTSPR 14 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MAPALS(0.006)GANLT(0.097)S(0.897)PR;MAPALS(0.002)GANLT(0.246)S(0.752)PR;MAPALS(0.003)GANLT(0.106)S(0.89)PR;MAPALSGANLT(0.448)S(0.551)PR ;;; 134.37 0.00069971 355929000 10196.5 8808.5 7522.84 7636 8653.4 8154 6682.74 5726.09 9516.3 8837.8 TRUE FALSE FALSE 9001.281727 9079.879444 7929.547486 7947.429086 8015.055922 7998.476035 6940.49552 6377.92494 9124.034086 8785.232373 1.024592332 1.033538905 0.90259963 0.904635045 0.912332831 0.910445586 0.790018434 0.725982498 1.038564912 1 13.10086473 -3.051484302 0.360273947 1.017616318 0.086449936 0.875569473 0.035156836 3.341038828 0.155163003 0.011107069 1.62583684 0.00088821 3.051484302 -0.931166381 EPYGHLGPAELLEAS(ph)PAAR ddPTM_HeLa_CUDC101_4h_R1 2 EPYGHLGPAELLEASPAAR 19 0 Q9H6W3 Q9H6W3 NO66 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 1 0 EPYGHLGPAELLEAS(1)PAAR;EPYGHLGPAELLEAS(1)PAAR ; 166.01 3.18E-06 10126500 5158.2 3669.7 3998.2 3851.3 4630 4721.1 3581.7 1892.02 4636.2 5107.9 TRUE FALSE FALSE 4553.563615 3782.759107 4214.354786 4008.372661 4288.454124 4631.052883 3719.847369 2107.399909 4445.093874 5077.517984 0.896808959 0.745001617 0.830002927 0.789435443 0.844596541 0.912070208 0.732611363 0.415045287 0.87544621 1 12.30990773 -3.050964804 0.237088813 0.984648953 2.18E-33 0.513002116 0.104959498 10.83146627 0.307619833 0.074001738 3.449828706 0.000889273 3.050964804 -0.984648953 SSPNPFVGS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 2 SSPNPFVGSPPK 12 0 P98082-3;P98082 P98082-3 DAB2 Disabled homolog 2 1 0 S(0.2)S(0.035)PNPFVGS(0.765)PPK;S(0.063)S(0.007)PNPFVGS(0.93)PPK ; 146.27 0.00091792 731740000 7619.9 7238.4 5604.4 5965.8 5626.5 6345.5 5408.7 3751.4 6054.6 6994.9 TRUE FALSE FALSE 6726.706873 7461.406524 5907.390816 6209.11111 5211.444305 6224.47016 5617.315371 4178.444212 5805.026825 6953.294024 0.967412977 1.073075078 0.849581622 0.892974048 0.749492872 0.895182936 0.807863921 0.600930178 0.834859968 1 12.76348088 -3.049297108 0.317607634 1.001875006 1.73E-15 0.525965635 0.087399562 5.764289251 0.229911275 0.025144218 2.605771183 0.000892695 3.049297108 -1.001875006 LAGS(ph)PIR ddPTM_HeLa_CUDC101_4h_R1 4 LAGSPIR 7 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6;F8W8U2 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 0 LAGS(1)PIR;LAGS(1)PIR;LAGS(1)PIR;LAGS(1)PIR ;;; 110.12 0.014134 130218000 25644.8 19596.8 18690.1 20570.6 20326.2 19593.8 17517.4 12751.7 19858.7 22139.1 TRUE FALSE FALSE 22638.75542 20200.55418 19700.54334 21409.55798 18826.77672 19220.08091 18193.05199 14203.30198 19040.11598 22007.41565 1.028687592 0.917897608 0.895177501 0.972833809 0.855474219 0.873345658 0.826678256 0.645387092 0.865168191 1 14.42570212 -3.046831573 0.351516996 1.015550506 2.65E-19 0.619518293 0.063174697 3.628792277 0.163189498 0.013601576 1.872441113 0.000897777 3.046831573 -1.015550506 DPLEEMVPLSHLEEEQPPAPES(ph)PESR ddPTM_HeLa_CUDC101_4h_R1 2 DPLEEMVPLSHLEEEQPPAPESPESR 26 0 O60307 O60307 MAST3 Microtubule-associated serine/threonine-protein kinase 3 1 0 DPLEEMVPLSHLEEEQPPAPES(0.983)PES(0.017)R;DPLEEMVPLSHLEEEQPPAPES(0.716)PES(0.284)R ; 118.81 3.82E-10 6156800 1647.54 1332.61 1428.84 1426.02 1479.93 1456.92 1290.02 1342.06 1635.81 1389.24 TRUE FALSE FALSE 1454.417859 1373.666135 1506.087412 1484.179259 1370.758512 1429.131678 1339.776504 1494.834686 1568.381219 1380.976739 1.053180563 0.994706208 1.090595786 1.074731542 0.992600725 1.034870203 0.970165873 1.082447404 1.135704299 1 10.4314733 -3.04397231 20.02745906 1.028676225 1.083289743 0 0.052575176 0 0 0.00520106 0 0.000903707 3.04397231 0.054613518 FTPVASKFS(ph)PGAPGGSGSQPNQK ddPTM_HeLa_CUDC101_4h_R1 2 FTPVASKFSPGAPGGSGSQPNQK 23 1 Q15942-2;Q15942;H0Y2Y8;H7C3D3 Q15942-2 ZYX Zyxin 1 0 FTPVAS(0.013)KFS(0.98)PGAPGGS(0.004)GS(0.002)QPNQK;FT(0.006)PVAS(0.072)KFS(0.886)PGAPGGS(0.024)GS(0.013)QPNQK ; 89.345 0.00015181 476690000 5935.8 6017.7 5635.2 5209.3 6187.8 5374.8 4830.8 3693.2 6287 4616.5 TRUE FALSE FALSE 5240.014522 6203.098204 5939.855958 5421.757771 5731.338322 5272.284645 5017.125574 4113.61896 6027.847199 4589.040853 1.141853971 1.351719979 1.29435674 1.181457726 1.248918566 1.148885969 1.093284138 0.896400597 1.313530952 1 12.16397693 -3.0382493 13.87386479 1.117454152 1.125862946 0 0.145199213 0 0 0.019633686 0 0.000915695 3.0382493 0.008408794 RAS(ph)LTLEEK ddPTM_HeLa_CUDC101_4h_R1 1 RASLTLEEK 9 1 A0A0U1RQQ9;Q6P3W7 A0A0U1RQQ9 SCYL2 SCY1-like protein 2 1 0 RAS(0.976)LT(0.024)LEEK 89.44 0.015709 20840000 2921 2633.2 2958.6 2881.3 3148.5 2675 2397.3 1680.1 2575.6 2337.5 TRUE FALSE FALSE 2578.604808 2714.325771 3118.550865 2998.811868 2916.241428 2623.978832 2489.764664 1871.355793 2469.432678 2323.596446 1.109747268 1.168157137 1.342122411 1.290590659 1.255055039 1.129274766 1.071513372 0.805370397 1.06276315 1 11.18214381 -3.027548797 13.84416019 1.100287743 1.12454519 0 0.149485129 0 0 0.021463775 0 0.000938537 3.027548797 0.024257447 SESDLEDVGPTAEWNGDGS(ph)GSLRR ddPTM_HeLa_CUDC101_4h_R1 2 SESDLEDVGPTAEWNGDGSGSLRR 24 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 0 SESDLEDVGPTAEWNGDGS(0.5)GS(0.5)LRR;SESDLEDVGPTAEWNGDGS(0.5)GS(0.5)LRR ; 77.505 0.00016229 16247600 3714.3 3224.6 3287.8 2856 3643.2 3172.5 3148.4 3186.3 3485.9 3197.1 TRUE FALSE FALSE 3278.915385 3323.946104 3465.548413 2972.480025 3374.448394 3111.989848 3269.834843 3549.015513 3342.209727 3178.083507 1.031727259 1.045896402 1.090452282 0.935305828 1.061787202 0.979203297 1.02887002 1.116715626 1.051643143 1 11.63394132 -3.027378879 0.004948509 6.12E-08 2.101047766 0 0.050345198 65106.99663 36.81804132 7438.248155 8211.074567 0.000938904 3.027378879 2.101047705 ILSLSEEGS(ph)LER ddPTM_HeLa_CUDC101_4h_R1 2 ILSLSEEGSLER 12 0 A0A2R8Y661;H0Y8H7;A0A2R8YGD3;Q9Y4G8 A0A2R8Y661 RAPGEF2 Rap guanine nucleotide exchange factor 2 1 0 ILSLSEEGS(1)LER;ILSLS(0.001)EEGS(0.999)LER ; 159.66 0.00013178 9692700 3217.6 2827.1 2156.3 2347.1 2791.6 2545.9 2002.35 1632.96 3066.6 2956.6 TRUE FALSE FALSE 2840.437806 2914.1996 2272.8761 2442.824883 2585.66923 2497.341199 2079.58131 1818.849566 2940.19345 2939.014012 0.96645943 0.991556892 0.773346466 0.831171568 0.87977438 0.849720753 0.707577882 0.618863863 1.000401304 1 11.52111652 -3.025970904 0.268248178 1.008469839 1.69E-16 0.800070448 0.056227711 5.404742518 0.174903498 0.030384725 2.031123452 0.000941953 3.025970904 -1.008469839 T(ph)PPPPTLSPAAITVGR ddPTM_HeLa_CUDC101_4h_R1 1 TPPPPTLSPAAITVGR 16 0 E7EX82;Q8NDX5-2;Q8NDX5;Q8NDX5-7;H7C4H9 E7EX82 PHC3 Polyhomeotic-like protein 3 1 0 T(1)PPPPTLSPAAITVGR 104.95 0.012636 6052600 504.54 434.05 242.58 471.75 592.78 443.93 495.34 544.91 478 476.86 TRUE FALSE FALSE 445.398586 447.422566 255.6946086 490.9900041 549.0518004 435.4627749 514.4454297 606.9403518 458.2966377 474.0236155 0.939612651 0.943882438 0.539413228 1.035792285 1.158279424 0.918652068 1.085273841 1.280401085 0.966822375 1 8.888815125 -3.02552519 0.804739355 0.946557794 3.333712758 0.342296472 0.14890988 13.64685549 1.386703956 0.023884691 46.08421153 0.00094292 3.02552519 2.387154964 NMTVEQLLTGS(ph)PT(ph)SPTVEPEKPTR ddPTM_HeLa_CUDC101_4h_R1 1 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 2 0 NMTVEQLLT(0.007)GS(0.966)PT(0.533)S(0.472)PT(0.022)VEPEKPTR 86.304 8.90E-05 7127400 1753.5 1252.9 1154.8 1334.3 1508.8 1305.7 1218.9 755.74 1398 1539 TRUE FALSE FALSE 1547.957388 1291.500364 1217.231981 1388.718521 1397.49883 1280.795948 1265.913381 841.7703868 1340.373848 1529.84596 1.011838727 0.844202879 0.795656565 0.907750557 0.913489898 0.837205825 0.827477677 0.550232121 0.87614955 1 10.57917068 -3.017686503 0.291967619 1.012711215 6.20E-17 0.516065855 0.085157385 6.998346448 0.248890708 0.034147172 2.913420124 0.000960093 3.017686503 -1.012711215 LDNSPNMNIT(ph)QPSK ddPTM_HeLa_CUDC101_4h_R1 1 LDNSPNMNITQPSK 14 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 LDNS(0.409)PNMNIT(0.591)QPSK 158.31 0.00028731 13644000 3493.4 3101.7 3202.2 2670.5 2873.1 2402.8 2605.7 1893.2 3737.5 3717.3 TRUE FALSE FALSE 3083.908948 3197.259701 3375.320618 2779.414533 2661.157137 2356.970593 2706.202722 2108.714235 3583.438668 3695.189334 0.834574001 0.865249223 0.913436447 0.752171075 0.720168007 0.637848397 0.732358339 0.570664733 0.969757797 1 11.85143257 -3.017408774 0.139714618 1.066042257 1.28E-15 0.857233798 0.050588928 11.73683274 0.187144626 0.179486638 2.343649327 0.000960708 3.017408774 -1.066042257 EEDEPEERS(ph)GDETPGSEVPGDK ddPTM_HeLa_CUDC101_4h_R1 6 EEDEPEERSGDETPGSEVPGDK 22 1 Q1KMD3;H3BQZ7 Q1KMD3 HNRNPUL2;HNRNPUL2-BSCL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 0 EEDEPEERS(0.979)GDET(0.01)PGS(0.011)EVPGDK;EEDEPEERS(0.874)GDET(0.034)PGS(0.092)EVPGDK;EEDEPEERS(0.835)GDET(0.133)PGS(0.032)EVPGDK;EEDEPEERS(0.966)GDET(0.014)PGS(0.02)EVPGDK;EEDEPEERS(0.999)GDETPGSEVPGDK;EEDEPEERS(0.688)GDET(0.244)PGS(0.068)EVPGDK ;;;;; 107.49 1.27E-05 1742126000 26117.2 20831.5 20675.5 19346.41 19597.76 21433.61 19666.91 12225.05 23330.2 22525.74 TRUE FALSE FALSE 23055.78141 21473.29382 21793.28007 20135.44022 18152.07229 21024.7996 20425.46931 13616.70028 22368.51928 22391.7559 1.02965491 0.958982133 0.973272492 0.899234536 0.810658725 0.938952697 0.91218703 0.608112215 0.998962269 1 14.45068004 -3.016282491 0.381655913 1.014142146 7.35E-14 0.681948525 0.066396143 5.702065902 0.277754459 0.017951415 3.254590002 0.000963202 3.016282491 -1.014142146 GSLAEAVGS(ph)PPPAATPTPTPPTR ddPTM_HeLa_CUDC101_4h_R1 1 GSLAEAVGSPPPAATPTPTPPTR 23 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 0 GSLAEAVGS(1)PPPAATPTPTPPTR 182.22 1.39E-13 33525000 1821.9 1549.9 1693.8 1461.7 1570.8 1208.4 1368.5 934.35 1582.1 1913.7 TRUE FALSE FALSE 1608.339644 1597.650582 1785.371951 1521.314444 1454.925213 1185.351783 1421.283503 1040.712627 1516.885168 1902.317227 0.845463428 0.839844459 0.93852483 0.799716484 0.764817346 0.62310942 0.747132751 0.547076277 0.797388126 1 10.89354213 -3.013063175 0.18415238 1.010578508 2.15E-13 0.605067624 0.079790274 8.551537531 0.181597864 0.085192227 2.132198578 0.000970369 3.013063175 -1.010578508 TGTAEMSSILEER ddPTM_HeLa_CUDC101_4h_R1 3 TGTAEMSSILEER 13 0 P25705;P25705-3;K7ERX7;K7ESA0 P25705 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 0 ;; ;; 174.57 1.60E-06 21745600 1488.52 1486.02 1204.81 1150.06 1491.61 1396.68 1165.59 1291.16 1225.92 1508.45 FALSE FALSE TRUE 1314.037942 1531.802515 1269.945673 1196.964418 1381.576902 1370.040656 1210.547197 1438.140435 1175.387059 1499.477672 0.876330449 1.021557402 0.846925364 0.798254245 0.921372107 0.913678597 0.807312586 0.959094265 0.783864329 1 10.55024432 -10.31691541 0.361373214 1.102460524 0.880962983 0 0.09360092 5.437227972 0.515742577 0.522560617 0.022337435 4.82E-11 10.31691541 -0.221497541 SSLVSSS(ph)PASVR ddPTM_HeLa_CUDC101_4h_R1 1 SSLVSSSPASVR 12 0 S4R3K6;Q86VQ0 S4R3K6 LCA5 Lebercilin 1 0 S(0.002)S(0.007)LVS(0.042)S(0.042)S(0.627)PAS(0.28)VR 96.668 0.0018147 0 2817.6 2442.4 2402 2619.9 2621.1 2430.4 2109.9 1741.6 2454.1 1988.4 TRUE FALSE FALSE 2487.325199 2517.647449 2531.859386 2726.750846 2427.746675 2384.044169 2191.27955 1939.856704 2352.940959 1976.572908 1.25840296 1.273743781 1.280933972 1.379534666 1.228260625 1.206150382 1.108625713 0.981424311 1.190414454 1 10.94878546 -3.011415596 13.81445368 1.164133168 1.176814968 0 0.122846773 0 0 0.019929495 0 0.000974057 3.011415596 0.012681799 TGTITTFEHAHNMR ddPTM_HeLa_CUDC101_4h_R1 1 TGTITTFEHAHNMR 14 0 P13639 P13639 EEF2 Elongation factor 2 0 0 78.964 0.011673 37761000 2396.7 2927.7 3392.8 3076.4 3246.9 2566.8 3093.2 2831.2 3193.4 3232.5 FALSE FALSE TRUE 2115.762459 3017.898967 3576.225031 3201.868889 3007.382656 2517.842567 3212.50576 3153.492364 3061.7667 3213.272946 0.658444674 0.939197826 1.112954016 0.996450953 0.935925054 0.78357569 0.999761245 0.981395735 0.952849867 1 11.64982782 -7.023150372 24.77416028 0.836610575 0.966585545 0.107952628 0.114025909 990.8916216 1060392.35 0.024443385 0.030048385 9.48E-08 7.023150372 0.12997497 TGTIVVEGHELHDEDIR ddPTM_HeLa_CUDC101_4h_R1 2 TGTIVVEGHELHDEDIR 17 0 J3KR24;A0A0A0MSX9;P41252 J3KR24 IARS "Isoleucine--tRNA ligase, cytoplasmic" 0 0 ; ; 101.3 0.002165 29936000 6486.4 6164 5962.8 5238.8 6132 5676.6 5987.5 4853.8 5520.9 6396.8 FALSE FALSE TRUE 5726.074025 6353.905534 6285.167004 5452.460908 5679.654577 5568.328313 6218.439881 5406.336972 5293.326165 6358.751549 0.900502871 0.999237898 0.988427831 0.857473494 0.893202782 0.875695216 0.977934085 0.850219879 0.832447395 1 12.63452783 -6.265601503 24.99620551 0.958438335 0.895022692 0.148677204 0.058472199 363.9017664 2185460.888 0.007677312 0.011989978 5.42E-07 6.265601503 -0.063415643 TGTVGK(ac)LPPK ddPTM_HeLa_CUDC101_4h_R1 1 TGTVGKLPPK 10 1 A0A087X0M4;Q9BWU0 A0A087X0M4 SLC4A1AP Kanadaptin 0 1 TGTVGK(1)LPPK 88.496 0.027015 850270 997.51 984.63 1228.2 1200.6 1435 1242.7 1123.1 1182.7 1123.8 1376.9 FALSE TRUE FALSE 880.5833899 1014.965283 1294.600207 1249.565657 1329.142909 1218.997568 1166.418343 1317.333787 1077.476488 1368.710138 0.643367332 0.741548744 0.945854182 0.912951269 0.971091594 0.890617768 0.852202604 0.962463674 0.787220361 1 10.41860123 -6.740879046 24.71599652 0.820131444 0.919654855 0.313846486 0.090254801 382.163956 459405.9039 0.022019264 0.031118257 1.82E-07 6.740879046 0.099523412 WADPQISESNFS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 WADPQISESNFSPK 14 0 D6RAW2;Q9BW91-2;Q9BW91 D6RAW2 NUDT9 "ADP-ribose pyrophosphatase, mitochondrial" 1 0 WADPQISES(0.036)NFS(0.964)PK 138.39 0.00057596 18363000 2161.4 2098.5 1864.1 1825.8 1858.1 1798.8 1737.5 1246.7 1742 2035.1 TRUE FALSE FALSE 1908.043968 2163.152298 1964.878885 1900.264016 1721.031665 1764.490887 1804.515957 1388.619289 1670.194023 2022.995135 0.943177735 1.069282007 0.971272175 0.939331975 0.850734456 0.872217069 0.892002124 0.686417513 0.825604567 1 10.98227713 -3.005232721 0.461837797 0.982423095 6.50E-17 0.527055786 0.06922066 4.945954085 0.298016649 0.010818824 3.446506852 0.000988024 3.005232721 -0.982423095 ICMGMAWQSGT(ph)QR ddPTM_HeLa_CUDC101_4h_R1 1 ICMGMAWQSGTQR 13 0 Q9H0V9-3 Q9H0V9-3 1 0 ICMGMAWQS(0.11)GT(0.89)QR 79.489 0.015527 52287000 687.28 712.74 784.15 571.71 610 496.89 425.44 499.28 660.65 450.18 TRUE FALSE FALSE 606.7180802 734.6986746 826.5435209 595.0268049 565.0015153 487.4126511 441.8493633 556.116017 633.4177274 447.5023093 1.355787596 1.641776275 1.847015096 1.329661976 1.262566703 1.089184661 0.987367784 1.242710943 1.415451304 1 8.805751317 -3.002116082 14.35352586 1.246290618 1.1355198 0 0.267860901 0 0 0.040296851 0 0.000995139 3.002116082 -0.110770817 ELFQTPCT(ph)DNPTTDEK ddPTM_HeLa_CUDC101_4h_R1 1 ELFQTPCTDNPTTDEK 16 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 ELFQT(0.039)PCT(0.961)DNPTTDEK 127.57 0.0024158 12708000 2086.2 1961.7 2220.4 2078.4 2186.1 2156.6 1918.9 564.97 1467.7 1619.8 TRUE FALSE FALSE 1841.658798 2022.137652 2340.44154 2163.166136 2024.835758 2115.466448 1992.912616 629.2839011 1407.200785 1610.165358 1.14376998 1.255857134 1.45354111 1.34344347 1.257532805 1.313819378 1.237706802 0.390819426 0.873947994 1 10.65299314 -2.996302116 9.876407581 1.128248093 1.125953064 0 0.292694242 0 0 0.036335627 0 0.001008551 2.996302116 -0.00229503 T(ph)TKTPEDGDYSYEIIEK ddPTM_HeLa_CUDC101_4h_R1 1 TTKTPEDGDYSYEIIEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.763)T(0.162)KT(0.075)PEDGDYSYEIIEK 96.55 0.0050715 143400000 3538 3010.4 2954.2 3171.9 3070.3 2859.2 2848.8 2208.8 2908 3070.2 TRUE FALSE FALSE 3123.281003 3103.146856 3113.912988 3301.263792 2843.810086 2804.665524 2958.67917 2460.240864 2788.131009 3051.938314 1.02337619 1.016779023 1.02030666 1.081694141 0.931804576 0.918978444 0.969442651 0.806124047 0.913560735 1 11.57551009 -2.993427292 0.630105545 1.014837053 2.88E-16 0.535758667 0.050537163 5.426260373 0.443183783 0.006687989 5.754069029 0.001015249 2.993427292 -1.014837053 HGGS(ph)PQPLATTPLSQEPVNPPSEASPT(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HGGS(0.999)PQPLAT(0.002)T(0.001)PLS(0.003)QEPVNPPS(0.398)EAS(0.181)PT(0.417)R;HGGS(0.999)PQPLAT(0.001)TPLS(0.001)QEPVNPPS(0.192)EAS(0.24)PT(0.568)R ; 98.493 1.26E-08 484910000 3119.4 2055.94 2511.3 1952.3 2591.5 2748.2 2506.4 994.97 2672.6 3090.9 TRUE FALSE FALSE 2753.748661 2119.281075 2647.068474 2031.923233 2400.330208 2695.782664 2603.072688 1108.233363 2562.434297 3072.515189 0.896252253 0.689754466 0.861531453 0.661322437 0.781226474 0.877386277 0.847212309 0.360692558 0.833985884 1 11.58520443 -2.99309772 0.114568876 1.135221948 1.73E-13 0.286314182 0.142247268 40.82413551 0.528584227 0.826239467 7.2664641 0.00101602 2.99309772 -1.135221948 VEHS(ph)PGPPPVDK ddPTM_HeLa_CUDC101_4h_R1 2 VEHSPGPPPVDK 12 0 Q9H869-7;Q9H869-5;Q9H869-6;Q9H869-4;Q9H869-3;Q9H869-2;Q9H869;Q9H869-8;Q9H869-9 Q9H869-7 YY1AP1 YY1-associated protein 1 1 0 VEHS(1)PGPPPVDK;VEHS(1)PGPPPVDK ; 81.448 0.02095 79929000 12778.4 10783.7 12023.9 11699.7 11298.9 10596.8 10915.2 9126.4 11054.4 10433.3 TRUE FALSE FALSE 11280.53532 11115.93302 12673.9484 12176.86434 10465.40266 10394.6837 11336.20292 10165.31249 10598.73295 10371.24227 1.087674459 1.071803428 1.222027996 1.174098919 1.009078989 1.002260233 1.093041955 0.980144155 1.021934758 1 13.34030109 -2.99185474 12.17985958 1.059497169 0.679132859 0 0.076606981 0 0 0.010812205 0 0.001018932 2.99185474 -0.38036431 SSDPGPDIGVVEES(ph)PEKGDEISLR ddPTM_HeLa_CUDC101_4h_R1 3 SSDPGPDIGVVEESPEKGDEISLR 24 1 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 SSDPGPDIGVVEES(0.98)PEKGDEIS(0.02)LR;SSDPGPDIGVVEES(0.997)PEKGDEIS(0.003)LR;SSDPGPDIGVVEES(0.981)PEKGDEIS(0.018)LR ;; 78.484 0.00013533 47518000 9940.2 7591 8674 8133.6 7025.7 8222 6807.1 5614.1 8097.8 10262.4 TRUE FALSE FALSE 8775.024824 7824.869712 9142.942677 8465.323364 6507.428108 8065.179049 7069.652127 6253.186451 7764.005257 10201.35879 0.860181963 0.767041908 0.896247536 0.829823119 0.637898171 0.790598509 0.693010831 0.612975838 0.7610756 1 13.31647371 -2.987946099 0.099255255 1.169327502 1.94E-13 0.307565306 0.093732258 24.52191289 0.274532962 0.59084179 3.99960451 0.001028144 2.987946099 -1.169327502 TPAAAAAMNLAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 TPAAAAAMNLASPR 14 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR ; 107.13 0.0042706 35125900 4202.15 4216.94 3637.99 3802.72 3949.74 4121.18 3255.51 2890.45 4265.02 3474.43 TRUE FALSE FALSE 3709.580347 4346.858923 3834.670744 3957.811358 3658.375549 4042.575358 3381.076111 3219.487144 4089.21407 3453.763936 1.074068876 1.258585996 1.110287447 1.145941481 1.05924308 1.17048398 0.978954026 0.932167688 1.183987715 1 11.75395376 -2.985047689 11.07745089 1.062871289 0.65129037 0 0.100955318 0 0 0.013062859 0 0.001035029 2.985047689 -0.411580919 GES(ph)LDNLDSPR ddPTM_HeLa_CUDC101_4h_R1 3 GESLDNLDSPR 11 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 GES(0.788)LDNLDS(0.212)PR;GES(1)LDNLDSPR;GES(0.999)LDNLDS(0.001)PR ;; 198.48 2.65E-16 40209200 4328.62 3832.76 4107.93 3687.43 4305.54 3978.04 3834.25 4454.28 4359.26 4527.76 TRUE FALSE FALSE 3821.225725 3950.842793 4330.017122 3837.819334 3987.928892 3902.165515 3982.138307 4961.33723 4179.569458 4500.828682 0.849004927 0.877803416 0.962048864 0.852691716 0.886043254 0.866988235 0.884756694 1.102316391 0.928622206 1 12.13597494 -2.98286233 16.36866589 0.920474478 0.914027243 0 0.076177997 0 0 0.010813448 0 0.00104025 2.98286233 -0.006447234 MVEPENAVTITPLRPEDDYS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 MVEPENAVTITPLRPEDDYSPR 22 1 A0A0G2JMS7;A0A0G2JNZ2;A0A669KB89;Q14160-2;Q14160;A0A0G2JPP5;Q14160-3;A0A669KAX5;H0YDF9 A0A0G2JMS7 SCRIB Protein scribble homolog 1 0 MVEPENAVTIT(0.001)PLRPEDDY(0.312)S(0.687)PR;MVEPENAVTITPLRPEDDY(0.006)S(0.994)PR;MVEPENAVTITPLRPEDDY(0.022)S(0.978)PR;MVEPENAVTITPLRPEDDY(0.02)S(0.98)PR ;;; 119.18 3.67E-07 174750000 7305.23 6386.82 5664.75 5973.68 5952.8 5308.01 4563.38 4162.82 6429 7232.3 TRUE FALSE FALSE 6448.922013 6583.590354 5971.00352 6217.312491 5513.673804 5206.768553 4739.391095 4636.698602 6163.993899 7189.281958 0.897018931 0.915750751 0.830542404 0.864802984 0.766929693 0.724240416 0.659230104 0.644945994 0.857386584 1 12.81163197 -2.980440789 0.203445551 1.0141129 1.67E-20 0.816815579 0.046756044 3.048591072 0.07122058 0.025638583 0.850027124 0.001046066 2.980440789 -1.0141129 TGYTLDVTTGQR ddPTM_HeLa_CUDC101_4h_R1 1 TGYTLDVTTGQR 12 0 O60506-2;O60506;O60506-4;O60506-3;B7Z645;F6UXX1;O43390;O43390-4;O43390-2 O60506-2;O43390 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R 0 0 120.63 0.01887 1370700 562.98 664.18 582.48 629.44 874.51 739.23 590.7 615.39 466.96 626.77 FALSE FALSE TRUE 496.9883378 684.6425986 613.9706307 655.1112839 809.9991396 725.1304194 613.4834969 685.4435101 447.7117112 623.0419442 0.797680385 1.098870798 0.985440284 1.0514722 1.300071604 1.1638549 0.984658421 1.100156284 0.718590001 1 9.283185481 -7.239472577 24.24881781 0.904460184 1.097656596 0.500041146 0.113107636 419.8810307 463500.4886 0.01915541 0.02344862 5.76E-08 7.239472577 0.193196411 NSS(ph)PEKHILENK ddPTM_HeLa_CUDC101_4h_R1 1 NSSPEKHILENK 12 1 E7EVA0;B5MEG9 E7EVA0 MAP4 Microtubule-associated protein 1 0 NS(0.333)S(0.667)PEKHILENK 58.824 0.03858 73823000 7447 6716.8 7366.5 6437.6 8290 7798.4 7505.6 8722.5 7925.5 9399.7 TRUE FALSE FALSE 6574.073949 6923.736647 7764.755272 6700.153154 7678.463216 7649.658513 7795.093506 9715.434142 7598.807535 9343.790166 0.703576796 0.74099873 0.831007025 0.717070165 0.821771795 0.818689031 0.834253913 1.039774435 0.813246809 1 13.18979216 -2.979926582 14.78539884 0.841232317 43.92511214 0 0.105290816 0 0 0.017351549 0 0.001047306 2.979926582 43.08387982 RLS(ph)ESQLSFR ddPTM_HeLa_CUDC101_4h_R1 1 RLSESQLSFR 10 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 0 RLS(0.995)ES(0.005)QLSFR 128.08 0.0058462 35532000 1792 1585.6 1143.4 1452.4 1959 1595.9 1844.3 2612.6 1323 1472 TRUE FALSE FALSE 1581.944476 1634.450457 1205.215663 1511.63515 1814.488473 1565.460866 1915.435269 2910.007824 1268.46538 1463.244479 1.081121097 1.117004356 0.823659806 1.033070804 1.24004464 1.069855987 1.309032972 1.988736582 0.866885472 1 10.51495512 -2.967496565 0.975214704 1.034722716 11.81404736 0.87514219 0.110157093 4.302649215 0.421371434 0.014722344 85.68109912 0.001077714 2.967496565 10.77932465 SLGSVQAPSYGARPVSSAASVYAGAGGS(ph)GSR ddPTM_HeLa_CUDC101_4h_R1 2 SLGSVQAPSYGARPVSSAASVYAGAGGSGSR 31 1 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 SLGSVQAPSYGARPVSSAASVYAGAGGS(0.788)GS(0.212)R;SLGSVQAPSYGARPVSSAASVYAGAGGS(0.794)GS(0.206)R ; 97.134 1.88E-09 51589000 2882.1 3307.8 2510.1 2234.35 3404.2 3113.6 3483.8 4131.7 3026.1 2700.7 TRUE FALSE FALSE 2544.264607 3409.709397 2645.803599 2325.476451 3153.078948 3054.213268 3618.171333 4602.036027 2901.362877 2684.636116 0.947713022 1.270082518 0.985535277 0.86621663 1.174490252 1.137663778 1.347732496 1.714212216 1.080728543 1 11.39051084 -2.964321007 0.661003846 0.990703163 5.254721264 0.776047757 0.11081667 4.154746355 0.341500277 0.017977103 19.82313822 0.001085623 2.964321007 4.264018101 THILLFLPK ddPTM_HeLa_CUDC101_4h_R1 1 THILLFLPK 9 0 P07237;H7BZ94;I3L398;I3L312;I3L4M2 P07237 P4HB Protein disulfide-isomerase 0 0 107.47 0.0015506 0 1588.7 770.11 531.66 902.49 882.85 795.79 728.49 652.59 369.65 125.98 FALSE FALSE TRUE 1402.474994 793.8361763 560.4031478 939.2974431 817.7239144 780.6116316 756.5881033 726.8782077 354.4128705 125.2306654 11.19913394 6.338991924 4.474967423 7.500538629 6.529741833 6.233390435 6.041556205 5.804314827 2.830080552 1 6.968444069 -6.234921329 24.19825211 5.89466485 6.396294484 0.01930019 2.558119684 5008.731159 4570562.828 0.574922569 0.953199372 5.82E-07 6.234921329 0.501629634 THINIVVIGHVDSGK ddPTM_HeLa_CUDC101_4h_R1 1 THINIVVIGHVDSGK 15 0 Q5VTE0;P68104;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01;A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5 Q5VTE0;A0A2U3TZH3 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 0 115.04 0.0031709 3497300 5122.2 3603.2 3832.6 3236.8 5865.7 5212.2 4511.6 3991 5179.8 6260.3 FALSE FALSE TRUE 4521.783481 3714.210321 4039.801949 3368.810695 5432.998997 5112.785969 4685.613923 4445.319308 4966.286452 6223.063457 0.726616965 0.596845966 0.649166118 0.541342816 0.873042519 0.821586668 0.752943298 0.714329741 0.798045285 1 12.60340924 -8.92940178 0.844913262 0.993734478 0.710931807 0.256563068 0.110416921 0.354778056 0.47929239 0.058764384 0.020540803 1.18E-09 8.92940178 -0.282802671 MMDT(ph)HGSWMKDAVYNSPK ddPTM_HeLa_CUDC101_4h_R1 1 MMDTHGSWMKDAVYNSPK 18 1 Q6UWY5 Q6UWY5 OLFML1 Olfactomedin-like protein 1 1 0 MMDT(0.782)HGS(0.131)WMKDAVY(0.077)NS(0.009)PK 44.294 0.0033195 0 317.29 354.85 243.52 308.83 407.15 310.55 396.98 338.72 302.98 427.29 TRUE FALSE FALSE 280.0977472 365.7825079 256.6854278 321.4254223 377.1153557 304.6267762 412.2916516 377.2785156 290.4910362 424.7484601 0.65944382 0.861174418 0.604323387 0.756742996 0.887855734 0.717193362 0.970672505 0.888239867 0.6839131 1 8.730464907 -2.954634148 13.09709619 0.823852468 43.79461469 0 0.131493442 0 0 0.019949969 0 0.00111011 2.954634148 42.97076222 THLMSEEEWR ddPTM_HeLa_CUDC101_4h_R1 1 THLMSEEEWR 10 0 P33552 P33552 CKS2 Cyclin-dependent kinases regulatory subunit 2 0 0 201.61 3.94E-17 16354000 2256.7 2008.5 2310.7 2117.8 2456.3 1816.4 1724.1 1505.4 2256.3 2212.8 FALSE FALSE TRUE 1992.173047 2070.379504 2435.623431 2204.173038 2275.103643 1781.755196 1790.599115 1676.768651 2163.294359 2199.638167 0.90568216 0.941236398 1.107283674 1.002061644 1.034308131 0.810021949 0.814042574 0.762292943 0.98347737 1 11.10305051 -5.205128665 7.520544219 0.973179027 0.796169131 0.725836632 0.055309669 0.150933453 17.91150785 0.009184849 0.023510708 6.24E-06 5.205128665 -0.177009895 THNDIIHNENMR ddPTM_HeLa_CUDC101_4h_R1 7 THNDIIHNENMR 12 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 0 ;;;;;; ;;;;;; 151.13 0.00041397 125084400 10513.729 8488.19 9290.417 8727.38 11975.737 10710.49 10378.416 9730.73 10188.69 10494.48 FALSE FALSE TRUE 9281.325624 8749.701073 9792.685045 9083.320279 11092.31074 10506.20525 10778.71498 10838.43697 9768.707886 10432.05837 0.889692647 0.83873199 0.938710722 0.87071218 1.063290709 1.007107598 1.033229934 1.038954786 0.936412311 1 13.34873623 -5.750303583 24.99999827 0.932007812 1.033434769 0.624219095 0.045332551 166.7549448 374364.3144 0.008495647 0.016866004 1.78E-06 5.750303583 0.101426957 GPAFNMASPES(ph)DFGINLK ddPTM_HeLa_CUDC101_4h_R1 1 GPAFNMASPESDFGINLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GPAFNMAS(0.196)PES(0.804)DFGINLK 71.241 0.035638 33376000 1862.7 1883.5 1221.6 1580.2 1428.7 1576.4 1371.5 851.72 2012.5 1947.3 TRUE FALSE FALSE 1644.35713 1941.528403 1287.643391 1644.647386 1323.307647 1546.332796 1424.399214 948.676362 1929.543898 1935.717373 0.849482033 1.003002003 0.665202167 0.849631981 0.683626477 0.798842237 0.735850819 0.490090328 0.996810756 1 10.91865261 -2.954374196 0.162576292 1.034492395 3.91E-13 0.657881728 0.093622615 15.39949155 0.281584817 0.1800397 3.465050163 0.001110774 2.954374196 -1.034492395 ANSPS(ph)LFGTEGKPK ddPTM_HeLa_CUDC101_4h_R1 2 ANSPSLFGTEGKPK 14 1 Q5JPT2;Q96B97-2;Q96B97;Q96B97-3 Q5JPT2 SH3KBP1 SH3 domain-containing kinase-binding protein 1 1 0 ANS(0.174)PS(0.826)LFGTEGKPK;ANS(0.015)PS(0.985)LFGTEGKPK ; 83.53 0.012103 454980000 11931.5 10357.2 10353.6 10121.6 10531 8560.8 8472.6 6261.2 11184 12550.7 TRUE FALSE FALSE 10532.90766 10676.29306 10913.34693 10534.4026 9754.149111 8397.517003 8799.39102 6973.949699 10722.99079 12476.04788 0.84425034 0.855743194 0.874743913 0.844370164 0.781830048 0.673091117 0.705302761 0.55898709 0.859486184 1 13.60687337 -2.954262449 0.190916441 1.001508053 2.10E-16 0.817875701 0.050431737 6.315904515 0.136615632 0.056635996 1.626753723 0.00111106 2.954262449 -1.001508053 KAEGEPQEES(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 6 KAEGEPQEESPLK 13 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK ;;;;; 153.48 0.00039734 5889139000 55545.4 42993.7 44372.5 41862.7 39491.1 42788.7 39504.1 26195.6 45440.8 49526.2 TRUE FALSE FALSE 49034.45241 44318.28494 46771.41157 43570.04185 36577.92023 41972.57684 41027.78637 29177.60122 43567.71099 49231.61596 0.995995184 0.90019968 0.950027958 0.885001254 0.742976226 0.852553304 0.833362577 0.592659831 0.884953909 1 15.58729747 -2.953948424 0.276405392 1.017081415 3.43E-22 0.642906071 0.069393547 5.45200735 0.176811507 0.02738607 2.156569286 0.001111864 2.953948424 -1.017081415 GSEGDCS(ph)PEDKNSVTAK ddPTM_HeLa_CUDC101_4h_R1 5 GSEGDCSPEDKNSVTAK 17 1 Q9UKJ3;Q9UKJ3-2 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 1 0 GSEGDCS(0.986)PEDKNS(0.013)VT(0.001)AK;GS(0.031)EGDCS(0.963)PEDKNS(0.005)VT(0.001)AK;GSEGDCS(1)PEDKNSVTAK;GS(0.004)EGDCS(0.983)PEDKNS(0.007)VT(0.006)AK;GS(0.008)EGDCS(0.992)PEDKNSVTAK ;;;; 210.39 4.80E-23 402517000 27047 22909.6 26099.8 24727.3 27411.7 23661.9 21580.8 19830.6 25279.3 22773.6 TRUE FALSE FALSE 23876.59166 23615.41762 27510.83414 25735.78617 25389.5935 23210.58868 22413.17869 22088.03535 24237.27655 22638.14161 1.054706348 1.043169445 1.215242603 1.136832988 1.121540537 1.02528684 0.990062659 0.975700025 1.070638967 1 14.46646791 -2.952258551 9.409441206 1.047505541 0.709820483 0 0.073080961 0 38493350.79 0.010776233 0 0.001116199 2.952258551 -0.337685058 VVNANQNAS(ph)PNVPGKR ddPTM_HeLa_CUDC101_4h_R1 2 VVNANQNASPNVPGKR 16 1 Q8IWI9;Q8IWI9-3;H3BP52;H3BTF4 Q8IWI9 MGA MAX gene-associated protein 1 0 VVNANQNAS(1)PNVPGKR;VVNANQNAS(1)PNVPGKR ; 78.552 0.0098358 23295000 4854.2 4743.5 4760.6 4054.8 4671.6 4494.1 4026 3068.6 4643.7 5035.9 TRUE FALSE FALSE 4285.198034 4889.641613 5017.972436 4220.17227 4326.985375 4408.38253 4181.284169 3417.91702 4452.284721 5005.946243 0.856021584 0.976766704 1.002402382 0.84303188 0.864369125 0.880629219 0.835263498 0.682771419 0.889399227 1 12.28942708 -2.951967326 0.481606767 0.939634765 1.19E-19 0.645421004 0.053864871 7.579359628 0.458596831 0.013431631 5.377892651 0.001116947 2.951967326 -0.939634765 SPGS(ph)PVCR ddPTM_HeLa_CUDC101_4h_R1 1 SPGSPVCR 8 0 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 S(0.029)PGS(0.971)PVCR 90.149 0.029134 6931000 1165.4 834.61 1043.7 1010.7 1083.1 997.83 835.63 721.15 977.44 1094.5 TRUE FALSE FALSE 1028.793579 860.3233448 1100.125579 1051.920715 1003.201871 978.7980552 867.860529 803.242801 937.1495095 1087.989865 0.945591141 0.790745734 1.011154253 0.966847898 0.922069132 0.899638946 0.797673358 0.73828151 0.861358676 1 10.0874494 -2.951722848 0.471873822 0.968842059 1.21E-20 0.411048124 0.068210337 6.79040036 0.402001015 0.012871009 4.844986714 0.001117576 2.951722848 -0.968842059 QKDFLDGVYAFEYYPST(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 1 QKDFLDGVYAFEYYPSTPGR 20 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 1 0 QKDFLDGVYAFEYYPS(0.228)T(0.772)PGR 170.68 9.20E-08 49985000 3576.3 3065.6 2796.6 3248.9 3180.9 3147.1 2938.3 3500 3558.5 3357 TRUE FALSE FALSE 3157.091535 3160.047502 2947.792655 3381.404185 2946.251344 3087.074311 3051.631215 3898.425853 3411.817124 3337.032415 0.946077575 0.946963382 0.883357513 1.013296775 0.882895632 0.925095692 0.91447455 1.168231341 1.022410543 1 11.70434999 -2.945629998 9.857103942 0.965600384 0.960961957 0 0.0814444 0 0 0.009650339 0 0.001133366 2.945629998 -0.004638427 THTGEK(ac)PYK ddPTM_HeLa_CUDC101_4h_R1 1 THTGEKPYK 9 1 P57682;I3L4C4;O95125;E9PJ50;A0A0C4DFQ3;F8W7T7;A0A3F2YPB8;B9EG95;A0A087WT67;A0A087WVT1;C9J2N8;F8W6Y9;A0A087WXA8;A0A0M3HEQ9;H9KV89;A0A087X254;Q8N184-1;B4DI05;R4GMT1;P51814-3;P17025;Q86WZ6;Q8N7K0-2;P15621-3;P51814-5;A6NHJ4;O14628;Q9H7R0;P17025-2;P51814-7;P51814;E7EX64;Q9P2J8;Q7Z7L9;P17040-2;P16415;P17040-3;O14628-6;Q9NPC7;O14628-5;Q96MX3;Q8N972;P51814-2;Q32M78;P51814-8;Q8N8J6-2;Q86WZ6-2;Q9P2J8-2;Q8N8J6-3;Q99676;Q8N8J6;Q6ZMW2;P51814-4;O14978;Q8N7K0;Q9Y2A4;P15621;P15621-2;F8WEL6;Q9HBT7;Q9H4T2;Q15973-2;Q2M218-2;Q2M218;Q9UC07;Q86XU0;P16415-2;O75346-2;O95780-2;Q9Y4X4;Q6U7Q0;Q96BR6-2;Q13887-4;Q9UJN7;Q8N184;Q15973;Q96N95;Q13360-2;Q8IZC7-2;Q13887-2;O75840;Q15973-1;Q15973-4;O75840-4;O75840-2;P52743;Q6ZT77;O95125-2;P51814-6;Q8N859;Q9NPC7-2;Q8IZC7;Q8NDW4;P36508;O14628-7;Q9H7R0-2;O14628-4;Q14584;Q6ZMS4;C9JN71;P0CG31;Q9HBT8;P36508-2;Q9HBT8-2;Q9NPC7-3;O75346;O95780;A6NP11;Q13360;O95780-3;Q96BR6;Q96H40;Q13887;Q9UC06;Q8N8L2;P17040;Q9UEG4;O75362;A0A0A0MS50;Q96RE9-4;Q96RE9;Q96RE9-2;Q96RE9-3;Q86YE8-2;Q86YE8-4;Q86YE8-3;Q86YE8;Q9P0L1;A0A087WUV0 P57682;Q9UEG4;O75362;A0A0A0MS50;Q86YE8-2;Q9P0L1;A0A087WUV0 KLF3;ZNF263;ZNF202;ZNF48;ZSCAN2;ZNF44;ZNF682;ZNF195;ZNF823;ZNF630;ZNF615;ZNF567;MYNN;ZNF41;ZNF182;ZNF227;ZNF433;ZNF860;ZNF442;ZNF76;ZNF624;ZSCAN20;ZNF709;ZNF699;ZNF184;ZNF782;ZNF443;ZNF287;ZSCAN16;ZNF124;ZNF69;ZNF677;ZNF253;KLF12;ZNF322;ZNF669;KLF5;ZNF391;ZNF396;ZNF177;ZNF101;KLF7;ZNF137P;ZNF826P;ZNF713;ZNF248;ZNF266;ZNF852;ZNF878;ZNF286B;ZNF286A;ZNF716;ZNF486;ZNF70;ZNF491;ZNF629;ZNF217;ZNF300;ZNF573;ZKSCAN7 Krueppel-like factor 3;Zinc finger protein 202;Zinc finger protein 567;Zinc finger protein 41;Zinc finger protein 182;Zinc finger protein 227;Zinc finger protein 433;Zinc finger protein 44;Zinc finger protein 860;Zinc finger protein 195;Zinc finger protein 442;Zinc finger protein 624;Zinc finger and SCAN domain-containing protein 2;Zinc finger and SCAN domain-containing protein 20;Zinc finger protein 823;Myoneurin;Zinc finger protein 48;Zinc finger protein 709;Zinc finger protein 699;Zinc finger protein 615;Zinc finger protein 184;Zinc finger protein 782;Zinc finger protein 263;Zinc finger protein 443;Zinc finger protein 287;Zinc finger and SCAN domain-containing protein 16;Zinc finger protein 124;Zinc finger protein 630;Zinc finger protein 69;Zinc finger protein 677;Zinc finger protein 253;Zinc finger protein 682;Krueppel-like factor 12;Zinc finger protein 322;Zinc finger protein 669;Krueppel-like factor 5;Zinc finger protein 391;Zinc finger protein 396;Zinc finger protein 177;Zinc finger protein 101;Krueppel-like factor 7;Putative zinc finger protein 137;Putative zinc finger protein 826;Zinc finger protein 713;Zinc finger protein 248;Zinc finger protein 76;Zinc finger protein 266;Zinc finger protein 852;Zinc finger protein 878;Putative zinc finger protein 286B;Zinc finger protein 286A;Zinc finger protein 716;Zinc finger protein 486;Zinc finger protein 70;Zinc finger protein 491;Zinc finger protein 629;Zinc finger protein 217;Zinc finger protein 300;Zinc finger protein 573;Zinc finger protein with KRAB and SCAN domains 7 0 1 THTGEK(1)PYK 62.823 0.035338 0 676.44 518.68 941.54 756.78 748.81 796.71 629.07 677.98 766.42 765.8 FALSE TRUE FALSE 597.1487286 534.659916 992.4425004 787.6447595 693.5717781 781.5140842 653.3334406 755.1585027 734.8278432 761.2449875 0.784436993 0.702349342 1.303709734 1.034679732 0.911101931 1.026626246 0.85824334 0.992004565 0.965297447 1 9.572217013 THTGEK(ac)PYR ddPTM_HeLa_CUDC101_4h_R1 1 THTGEKPYR 9 1 M0QZI7;Q9HCG1;Q9BSK1-2;Q499Z4;G5E9B8;E7EN86;A0A0A0MP75;Q99612;O94892;Q8WXB4;Q9NX65;Q9UJW8;Q9UJW8-4;Q9UJW8-3;A0A1W2PQ54;P52747;Q9NX65-3;P52747-3;P52747-2;Q86UD4;Q86TJ5;Q9NX65-2;Q9BSK1;Q9UJW8-2;Q8N8E2;Q8N8E2-2 M0QZI7;Q8N8E2 ZNF160;ZNF577;ZNF672;ZNF180;ZNF143;KLF6;ZNF432;ZNF606;ZSCAN32;ZNF329;ZNF554;ZNF513 Zinc finger protein 160;Zinc finger protein 577;Zinc finger protein 672;Krueppel-like factor 6;Zinc finger protein 432;Zinc finger protein 606;Zinc finger and SCAN domain-containing protein 32;Zinc finger protein 180;Zinc finger protein 143;Zinc finger protein 329;Zinc finger protein 554;Zinc finger protein 513 0 1 THTGEK(1)PYR 117.53 0.0018364 3981000 579.91 445.73 633.35 568.16 537.48 536.65 828.28 671.1 670.6 526.73 FALSE TRUE FALSE 511.9338289 459.462413 667.5908168 591.3320206 497.8311712 526.4142954 860.2270371 747.4953113 642.9575842 523.5969865 0.977724934 0.877511569 1.275008898 1.129364828 0.950790749 1.005380682 1.642918235 1.427615763 1.227962728 1 9.032312984 -4.768358375 24.99792739 1.009748094 1.535267037 0.664443749 0.133254944 46.13999798 166703.777 0.015703626 0.048647115 1.70E-05 4.768358375 0.525518944 LKSVEDEMDS(ph)PGEEPFYTGQGR ddPTM_HeLa_CUDC101_4h_R1 4 LKSVEDEMDSPGEEPFYTGQGR 22 1 A0A590UJA3;S4R3W2;A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UK73;B1AKN7 A0A590UJA3 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 LKSVEDEMDS(1)PGEEPFYTGQGR;LKSVEDEMDS(1)PGEEPFYTGQGR;LKS(0.213)VEDEMDS(0.785)PGEEPFY(0.001)T(0.001)GQGR;LKSVEDEMDS(1)PGEEPFYTGQGR ;;; 137.4 2.27E-07 137891000 9292.2 10195.8 9787.5 9331.4 12991.7 11366.3 11560.8 13069.8 11221 9089.2 TRUE FALSE FALSE 8202.982402 10509.92051 10316.64186 9711.974826 12033.32817 11149.50677 12006.70393 14557.6132 10758.46563 9035.137034 0.907897951 1.163227572 1.141835682 1.074911735 1.33183682 1.234016343 1.328890075 1.611222181 1.190736299 1 13.14133077 -2.943804809 0.31044532 0.943733762 2.835748911 0.648541487 0.110913638 4.530642971 0.166826092 0.034377018 3.822148456 0.001138139 2.943804809 1.892015149 QSSGPSS(ph)SPAAAAAPEKPGPK ddPTM_HeLa_CUDC101_4h_R1 2 QSSGPSSSPAAAAAPEKPGPK 21 1 Q9UDT6-2;Q9UDT6 Q9UDT6-2 CLIP2 CAP-Gly domain-containing linker protein 2 1 0 QS(0.001)S(0.001)GPS(0.099)S(0.538)S(0.361)PAAAAAPEKPGPK;QS(0.005)S(0.012)GPS(0.107)S(0.635)S(0.242)PAAAAAPEKPGPK ; 113.13 9.46E-06 15703400 6515.6 5741.1 5598.2 5458.4 5902.2 6133.5 4614.1 4212.5 6175.3 6153.6 TRUE FALSE FALSE 5751.851245 5917.976486 5900.855626 5681.017145 5466.806465 6016.513707 4792.067383 4692.033972 5920.75152 6116.998114 0.940306199 0.967464167 0.964665268 0.92872632 0.893707398 0.983572922 0.783401808 0.767048458 0.967917827 1 12.57860812 -2.941541053 0.50129255 0.973043487 4.17E-14 0.753733071 0.038509186 4.634378017 0.289796417 0.007746903 3.585994614 0.001144087 2.941541053 -0.973043487 SNS(ph)LSTPRPTR ddPTM_HeLa_CUDC101_4h_R1 1 SNSLSTPRPTR 11 1 J3KQR7;Q9Y4F5-3;Q9Y4F5-2;Q9Y4F5 J3KQR7 CEP170B Centrosomal protein of 170 kDa protein B 1 0 S(0.037)NS(0.949)LS(0.014)TPRPTR 68.033 0.036229 37739000 802.48 649.88 752.17 719.37 1038.9 655.5 869.59 993 880.67 1033.9 TRUE FALSE FALSE 708.4145109 669.9020325 792.8345854 748.709018 962.2624168 642.9974296 903.1303776 1106.039106 844.3684098 1027.750317 0.68928659 0.651813988 0.771427235 0.728493104 0.936280341 0.625635837 0.878744927 1.076174911 0.821569593 1 10.0052741 -2.939092694 20.91724221 0.828207267 43.83330027 0 0.144877263 0 0 0.021750524 0 0.001150555 2.939092694 43.005093 TIAPALVSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TIAPALVSKK 10 1 P06733;K7EM90;A0A2R8YEM5;A0A2R8Y879;K7ERS8;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 1 ; TIAPALVSK(1)K;TIAPALVSK(1)K 158.79 0.00042686 9049300 9038.1 5180.1 4072.3 5786 6607.1 5957.2 6149.8 5847.8 3736.9 3267.3 FALSE TRUE FALSE 7978.667619 5339.692741 4292.460856 6021.978089 6119.707396 5843.576335 6386.999846 6513.489914 3582.8634 3247.865954 2.45658772 1.644061921 1.321625004 1.854133814 1.884224128 1.799204899 1.966521998 2.005467592 1.103143865 1 11.66527638 -9.581939258 1.372888827 1.000884011 1.924707327 0.575538239 0.276159061 0.275057288 0.931095097 0.233095223 0.054579237 2.62E-10 9.581939258 0.923823317 GPT(ph)PGQAPAGGAGAEGK ddPTM_HeLa_CUDC101_4h_R1 2 GPTPGQAPAGGAGAEGK 17 0 A0A087WXB3;A0A087X223;A0A087WYW1;Q96NU1-4;Q96NU1-5;H7C3J6;H7BY14;A0A087WYU3;A0A087X1J5;Q96NU1-1;Q96NU1-2;Q96NU1-6;Q96NU1 A0A087WXB3 SAMD11 Sterile alpha motif domain-containing protein 11 1 0 GPT(1)PGQAPAGGAGAEGK;GPT(1)PGQAPAGGAGAEGK ; 136.85 0.0010691 19628400 6737.3 6047.3 5991.9 5863 6803.7 5006.4 5021.7 4103.6 5751.6 6726 TRUE FALSE FALSE 5947.563907 6233.610145 6315.840239 6102.118482 6301.804606 4910.911261 5215.388651 4570.737237 5514.516614 6685.993453 0.889555748 0.932338655 0.944637515 0.91267192 0.942538256 0.734507339 0.780046928 0.683628734 0.824786421 1 12.70692623 -2.937775795 0.367723804 0.960173695 2.83E-12 0.618114684 0.060782692 5.081198695 0.226121269 0.014496614 2.662158848 0.001154049 2.937775795 -0.960173695 ISTS(ph)PSVALSKPYMTVSSEFPAAR ddPTM_HeLa_CUDC101_4h_R1 1 ISTSPSVALSKPYMTVSSEFPAAR 24 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;Q6W2J9-3 H7BYY2 BCOR BCL-6 corepressor 1 0 IS(0.056)T(0.165)S(0.506)PS(0.249)VALS(0.019)KPY(0.004)MTVSSEFPAAR 47.616 0.029191 14298000 1504.7 1583.3 1359.9 1641.6 1309.5 1312.6 1142.3 796.94 1492.4 1790.8 TRUE FALSE FALSE 1328.321347 1632.079596 1433.420307 1708.551544 1212.900794 1287.564342 1186.358894 887.6604283 1430.88264 1780.148242 0.746185804 0.916822295 0.805225247 0.959780485 0.681348196 0.723290517 0.666438258 0.498644106 0.80379971 1 10.79778167 -2.934044746 0.205505062 0.952302358 2.29E-52 0.571984427 0.094080044 13.88865468 0.322600184 0.104143084 3.688595546 0.001164006 2.934044746 -0.952302358 TICSSVDK(ac)LDK ddPTM_HeLa_CUDC101_4h_R1 1 TICSSVDKLDK 11 1 E7ETE2;B4E1C5;B4DDD8;B3KWE1;P12081-3;P12081-2;P12081-4;P12081 E7ETE2 HARS "Histidine--tRNA ligase, cytoplasmic" 0 1 TICSSVDK(1)LDK 121.08 0.001998 961590 528.48 204.86 240.03 192.87 427.62 345.01 539.93 72.306 334.13 174.47 FALSE TRUE FALSE 466.5323755 211.1714938 253.0067479 200.7360723 396.0753245 338.4295091 560.755281 80.53702277 320.35702 173.4322447 2.689997909 1.217602264 1.458821849 1.157432245 2.283746747 1.951364406 3.233281573 0.46437168 1.847159509 1 7.43822834 -9.6790679 1.550458853 1.001130233 1.961850292 0 0.811861696 0.557682555 2.419210562 0.542666992 0.121584911 2.09E-10 9.6790679 0.96072006 IHRAS(ph)DPGLPAEEPK ddPTM_HeLa_CUDC101_4h_R1 3 IHRASDPGLPAEEPK 15 1 P27708;F8VPD4 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 0 IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK;IHRAS(1)DPGLPAEEPK ;; 173.03 2.74E-06 649862000 25170.1 18892.5 19721.1 21499.5 20262.5 20699 19570.1 15829.6 15347.5 17557.2 TRUE FALSE FALSE 22219.69903 19474.55553 20787.28232 22376.34254 18767.77574 20304.20106 20324.92531 17631.57768 14714.86955 17452.76899 1.273133165 1.115843311 1.191059271 1.282108446 1.075346597 1.163379924 1.164567372 1.01024529 0.843125212 1 14.09116833 -2.932084433 12.28407168 1.139320107 0.662146784 0 0.130626671 0 0 0.015014086 0 0.001169272 2.932084433 -0.477173323 TIDDLEDKLK ddPTM_HeLa_CUDC101_4h_R1 2 TIDDLEDKLK 10 1 J3KN67;P06753-7;P06753-2;A0A087WWU8;P06753-5 J3KN67;P06753-2 TPM3 Tropomyosin alpha-3 chain 0 0 ; ; 99.973 0.020256 65752000 7045.2 5877.2 5785.1 6160.9 6990.7 6447.3 5606.1 6757.5 6779.6 7372.3 FALSE FALSE TRUE 6219.372336 6058.269566 6097.860005 6412.168132 6475.009988 6324.328494 5822.329155 7526.746485 6500.142018 7328.449232 0.848661448 0.826678247 0.832080541 0.874969305 0.88354436 0.86298319 0.794483112 1.027058556 0.886973739 1 12.83929223 -9.202025414 0.912019879 1.001149637 0.864065387 0.071593185 0.067925652 0.418895861 0.619080078 0.038178703 0.010393879 6.28E-10 9.202025414 -0.13708425 TIDEGDADEVTK ddPTM_HeLa_CUDC101_4h_R1 1 TIDEGDADEVTK 12 0 Q7LBC6;Q7LBC6-2;Q7LBC6-3 Q7LBC6 KDM3B Lysine-specific demethylase 3B 0 0 110.84 0.0016708 0 1353.7 1281.1 1249.7 1321.6 1374.3 1345.4 1586.2 1183.9 1196.7 1215.2 FALSE FALSE TRUE 1195.021338 1320.569173 1317.262562 1375.50056 1272.920627 1319.738737 1647.380265 1318.670391 1147.371519 1207.971936 0.989279057 1.093211798 1.090474474 1.138685858 1.053766721 1.092524335 1.363757067 1.091639922 0.949832927 1 10.23837122 -5.844401018 0.462918865 0.988562204 1.234262692 0.462145222 0.079124679 0.902761971 0.308567415 0.021454894 0.097691693 1.43E-06 5.844401018 0.245700488 SESGGLGVSMVEYVLSSS(ph)PGDSCLRK ddPTM_HeLa_CUDC101_4h_R1 1 SESGGLGVSMVEYVLSSSPGDSCLRK 26 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 SESGGLGVSMVEYVLS(0.001)S(0.223)S(0.766)PGDS(0.01)CLRK 153.23 2.62E-11 54172000 1603.5 1503.5 1250.8 1302.1 1766.5 1325.7 1720.7 1466.4 1600.1 1154.6 TRUE FALSE FALSE 1415.540161 1549.821053 1318.422031 1355.205266 1636.188814 1300.414481 1787.067975 1633.329049 1534.143201 1147.732388 1.233336426 1.350333117 1.148719027 1.180767643 1.425583901 1.13302935 1.557042386 1.423092235 1.336673267 1 10.16457058 -2.932003385 0.037184383 1.75E-12 2.977113921 0.100780458 0.151672438 275.5003824 1.143174645 31.14635838 66.25475275 0.00116949 2.932003385 2.977113921 LDGLVET(ph)PTGYIESLPR ddPTM_HeLa_CUDC101_4h_R1 4 LDGLVETPTGYIESLPR 17 0 P55209;F5H4R6;P55209-2;F8W020;F8W0J6;F8VXI6;F8VUX1;F8VY35;H0YIV4;F8VV59;B7Z9C2;F8W118;P55209-3;H0YHC3;F8VRJ2 P55209 NAP1L1 Nucleosome assembly protein 1-like 1 1 0 LDGLVET(0.936)PT(0.062)GYIES(0.002)LPR;LDGLVET(0.979)PT(0.02)GYIES(0.001)LPR;LDGLVET(0.879)PT(0.06)GYIES(0.06)LPR;LDGLVET(1)PTGYIESLPR ;;; 147.53 0.00069231 507339800 9752.8 8116.74 7135.72 7347.45 8908.8 8309.15 7218.15 5644.94 7745.39 8443.04 TRUE FALSE FALSE 8609.591568 8366.807139 7521.498608 7647.110769 8251.615573 8150.666808 7496.556463 6287.537152 7426.121746 8392.820423 1.025828164 0.996900531 0.896182478 0.911149099 0.983175519 0.971147528 0.893210636 0.74915664 0.884818377 1 13.03494 -2.931392888 0.511479337 1.00383668 1.13E-45 0.465006738 0.056969249 5.754625965 0.364044375 0.009368789 4.720490184 0.001171135 2.931392888 -1.00383668 EGSITQGT(ph)PLKYDTGASTTGSK ddPTM_HeLa_CUDC101_4h_R1 2 EGSITQGTPLKYDTGASTTGSK 22 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 EGS(0.017)IT(0.057)QGT(0.915)PLKY(0.008)DT(0.001)GAS(0.001)T(0.001)TGSK;EGS(0.004)IT(0.022)QGT(0.973)PLKYDTGASTTGSK ; 84.762 0.00086266 44315000 5210.6 4512.6 4045.76 3452.92 4817.3 4554.5 3843.9 2168.27 4495.42 5096.4 TRUE FALSE FALSE 4599.821367 4651.627857 4264.486023 3593.745002 4461.937376 4467.630501 3992.160511 2415.097092 4310.116885 5066.086386 0.907963468 0.918189605 0.84177128 0.709373021 0.880746406 0.881870178 0.788016667 0.476718498 0.850778403 1 12.30665596 -2.928327747 0.254245018 0.985200777 3.49E-23 0.52367534 0.095010713 9.501937605 0.277555938 0.051894663 3.316382488 0.00117943 2.928327747 -0.985200777 TIGDMFQNQDR ddPTM_HeLa_CUDC101_4h_R1 1 TIGDMFQNQDR 11 0 Q96AY3;H0Y827;Q96AY3-2 Q96AY3 FKBP10 Peptidyl-prolyl cis-trans isomerase FKBP10 0 0 114.86 0.027279 16558000 989.91 882.39 950.82 736.58 1222.4 1289.6 1109.1 1042.1 1066.3 1043.7 FALSE FALSE TRUE 873.8742504 909.57539 1002.224205 766.6209162 1132.225987 1265.003029 1151.878359 1160.728452 1022.346663 1037.492026 0.842294908 0.876705909 0.966006659 0.738917406 1.091310544 1.219289399 1.110252734 1.11878301 0.985401947 1 10.01888453 -5.570367045 10.7084369 0.911497629 1.147163142 0.690570985 0.077085177 0.23876984 52.79763391 0.012085851 0.024192692 2.69E-06 5.570367045 0.235665513 EIPSATQS(ph)PISKK ddPTM_HeLa_CUDC101_4h_R1 3 EIPSATQSPISKK 13 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 0 EIPS(0.003)AT(0.078)QS(0.467)PIS(0.452)KK;EIPS(0.001)AT(0.002)QS(0.985)PIS(0.012)KK;EIPS(0.003)AT(0.162)QS(0.831)PIS(0.004)KK ;; 129.17 0.002548 164527000 9452.7 8615 9193.4 8989.5 9707.5 9018.4 6956.7 5609.7 8921 7046.1 TRUE FALSE FALSE 8344.668835 8880.417939 9690.423013 9356.130666 8991.397065 8846.389046 7225.022249 6248.285573 8553.272604 7004.189484 1.191382508 1.267872315 1.383518112 1.335790628 1.283716993 1.263013953 1.031528668 0.892078318 1.221165222 1 12.7740024 -2.921066859 13.76071398 1.146607543 1.159940546 0 0.156862088 0 0 0.023673068 0 0.001199315 2.921066859 0.013333003 TPSNGAEGLT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 TPSNGAEGLTPR 12 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 0 TPSNGAEGLT(1)PR 111.07 0.026466 38118000 1834.6 1681.4 1309.6 1265.3 1396.1 1477.6 1331 825.37 1465.8 1719.5 TRUE FALSE FALSE 1619.550969 1733.201941 1380.400937 1316.904403 1293.112484 1449.417242 1382.337116 919.3267845 1405.379104 1709.272338 0.947509027 1.013999878 0.807595669 0.770447385 0.756528059 0.847973263 0.808728419 0.537846875 0.822209002 1 10.73916656 -2.918351684 0.226894995 1.018068633 4.33E-19 0.497274094 0.093038385 8.701279994 0.223508948 0.058773138 2.76075263 0.001206836 2.918351684 -1.018068633 EIESEIDS(ph)EEELINK ddPTM_HeLa_CUDC101_4h_R1 5 EIESEIDSEEELINK 15 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 0 EIES(0.004)EIDS(0.996)EEELINK;EIESEIDS(1)EEELINK;EIES(0.131)EIDS(0.869)EEELINK;EIES(0.004)EIDS(0.996)EEELINK;EIESEIDS(1)EEELINK ;;;; 274.02 7.81E-86 101409200 11443.1 10339.7 9457.07 9200.4 12451.2 10804.2 10938.3 14395.6 12215.6 13993.1 TRUE FALSE FALSE 10101.75716 10658.2539 9968.34781 9575.63208 11532.69978 10598.12789 11360.1939 16034.33691 11712.0678 13909.86842 0.726229527 0.76623686 0.716638541 0.688405655 0.829102004 0.761914316 0.816700313 1.152731028 0.841997023 1 13.76382115 -2.915266868 10.12259358 0.841348677 43.81415754 0 0.136760872 0 0 0.020369799 0 0.001215439 2.915266868 42.97280886 TIGGGDDSFNTFFSETGAGK ddPTM_HeLa_CUDC101_4h_R1 2 TIGGGDDSFNTFFSETGAGK 20 0 Q9BQE3;F5H5D3;A0A1W2PQM2;P0DPH8;P0DPH7;F8VVB9;F8VQQ4;F8VS66;P0DPH7-2;F8VRZ4;F8VX09;F8VWV9;Q6PEY2;F8VRK0;F8W0F6;F8VXZ7;P68363;P68363-2;Q71U36-2;Q71U36 Q9BQE3;P68363 TUBA1C;TUBA1B;TUBA1A;TUBA3E Tubulin alpha-1C chain;Tubulin alpha-3E chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain 0 0 ; ; 267.5 2.68E-71 97707000 3385.57 2686.93 2863.05 2327.03 2362.32 1942.93 2268.71 2210.31 3102.02 3494.1 FALSE FALSE TRUE 2988.718617 2769.711129 3017.835143 2421.936342 2188.05636 1905.871847 2356.214905 2461.922756 2974.153423 3473.316938 0.860479671 0.797425394 0.868862588 0.697297824 0.629961619 0.548718093 0.678376015 0.708810281 0.856286217 1 11.76209835 -6.899079494 0.464697801 0.98148202 0.612439517 0.70448553 0.069779546 0.28861724 0.14401437 0.024699607 0.040202129 1.26E-07 6.899079494 -0.369042503 TIGGGDDSFTTFFCETGAGK ddPTM_HeLa_CUDC101_4h_R1 1 TIGGGDDSFTTFFCETGAGK 20 0 P68366-2;P68366;C9JEV8;C9JQ00;C9JJQ8;C9JDL2 P68366-2 TUBA4A Tubulin alpha-4A chain 0 0 188.09 3.42E-11 7489900 2148.9 2109.5 2141.1 1909 2119.7 2000.6 1575.8 1773 1942.7 1140.8 FALSE FALSE TRUE 1897.0092 2174.491195 2256.854342 1986.857271 1963.333954 1962.441888 1636.579134 1974.831153 1862.621084 1134.014471 1.672826272 1.917516267 1.990145982 1.752056365 1.731312963 1.730526319 1.44317306 1.741451458 1.642502042 1 10.14722333 -8.86289086 0.769476451 1.007162335 1.749809349 0.187210576 0.235702321 0.233504838 0.26151062 0.096795415 0.033469489 1.37E-09 8.86289086 0.742647014 IHS(ph)PIIR ddPTM_HeLa_CUDC101_4h_R1 2 IHSPIIR 7 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 0 IHS(1)PIIR;IHS(1)PIIR ; 88.37 0.022632 68016000 2424.1 2179.21 2343.3 2412.2 2360.1 2544.3 3037.1 2556.1 2747.7 3184.8 TRUE FALSE FALSE 2139.950673 2246.348877 2469.985886 2510.579942 2186.000125 2495.771717 3154.241964 2847.076092 2634.438643 3165.856668 0.675946796 0.709554826 0.780195108 0.793017564 0.690492449 0.788340086 0.99633126 0.899306693 0.832140845 1 11.62838022 -2.908720278 14.79996988 0.826510744 43.79194899 0 0.111284129 0 0 0.019211597 0 0.001233899 2.908720278 42.96543824 LFDTPHT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 LFDTPHTPK 9 0 P30291 P30291 WEE1 Wee1-like protein kinase 1 0 LFDTPHT(1)PK 91.313 0.037815 21941000 6837.4 5927.5 5597.8 5595.8 6163.4 5676.9 4305.7 3912.3 6898.4 6746.9 TRUE FALSE FALSE 6035.930337 6110.119249 5900.434 5824.020911 5708.738261 5568.622591 4471.772291 4357.660418 6614.045032 6706.769139 0.899975862 0.911037658 0.87977294 0.868379512 0.851190513 0.830298833 0.666755065 0.649740632 0.986174549 1 12.71140223 -2.90805714 0.275243443 0.978067128 1.87E-17 0.925590564 0.030175944 3.732491122 0.1180102 0.017335551 1.420573868 0.001235785 2.90805714 -0.978067128 VNLEESSGVENS(ph)PAGARPK ddPTM_HeLa_CUDC101_4h_R1 3 VNLEESSGVENSPAGARPK 19 1 Q8WVM8-2;Q8WVM8-3;Q8WVM8 Q8WVM8-2 SCFD1 Sec1 family domain-containing protein 1 1 0 VNLEESS(0.004)GVENS(0.996)PAGARPK;VNLEESSGVENS(1)PAGARPK;VNLEES(0.013)S(0.006)GVENS(0.981)PAGARPK ;; 199.12 2.47E-16 173778000 5963.9 5249 4473.7 5305.6 5632.4 5057.8 4794.8 3572.4 5239.9 5673.3 TRUE FALSE FALSE 5264.820683 5410.715468 4715.561754 5521.985301 5216.909073 4961.330892 4979.737042 3979.067576 5023.909104 5639.554959 0.933552509 0.95942242 0.836158489 0.979152671 0.925056873 0.879738016 0.883001776 0.70556411 0.890834319 1 12.4613656 -2.900802141 0.48904622 0.964588412 2.11E-50 0.588543639 0.051399486 6.000176071 0.353808716 0.009670691 4.503535218 0.001256602 2.900802141 -0.964588412 KELQAEATVSGS(ph)PEAPGTNVVSEPR ddPTM_HeLa_CUDC101_4h_R1 4 KELQAEATVSGSPEAPGTNVVSEPR 25 1 K7EJ02;Q9BZV1-2;Q9BZV1 K7EJ02 UBXN6 UBX domain-containing protein 6 1 0 KELQAEAT(0.001)VS(0.109)GS(0.889)PEAPGTNVVSEPR;KELQAEATVS(0.178)GS(0.819)PEAPGT(0.002)NVVSEPR;KELQAEAT(0.001)VS(0.031)GS(0.968)PEAPGTNVVSEPR;KELQAEATVS(0.293)GS(0.707)PEAPGTNVVSEPR ;;; 124.61 2.70E-10 74958000 9426.45 8864.6 8669.57 8024.53 9987.71 8532.64 7776.07 6569.58 8814.93 9566.69 TRUE FALSE FALSE 8321.495821 9137.707819 9138.273178 8351.805018 9250.936532 8369.894108 8075.995625 7317.434432 8451.574854 9509.786902 0.875045456 0.960874088 0.960933538 0.878232615 0.972780634 0.88013477 0.849229926 0.769463554 0.888723895 1 13.2151973 -2.894583923 0.582670485 0.943582097 7.67E-13 0.599672851 0.04188635 8.403817045 0.578822956 0.009094455 7.69662383 0.001274724 2.894583923 -0.943582097 SVPVNNLPERS(ph)PTDSPR ddPTM_HeLa_CUDC101_4h_R1 2 SVPVNNLPERSPTDSPR 17 1 P49454 P49454 CENPF Centromere protein F 1 0 SVPVNNLPERS(0.73)PT(0.251)DS(0.019)PR;SVPVNNLPERS(0.957)PT(0.003)DS(0.04)PR ; 166.36 5.51E-05 51038000 2759.5 2558.1 2636.9 2331.18 2857.2 2262.56 1824.6 1707.19 2786.7 2980.9 TRUE FALSE FALSE 2436.035593 2636.912029 2779.45879 2426.255597 2646.430048 2219.405438 1894.975433 1901.529609 2671.831046 2963.169474 0.822104714 0.889895786 0.938001965 0.818804195 0.893107894 0.748997132 0.639509636 0.641721517 0.901680133 1 11.53292543 -2.894563389 0.274504013 0.948025477 1.50E-30 0.771960719 0.054813248 7.606914532 0.238340728 0.033939125 2.801945756 0.001274784 2.894563389 -0.948025477 ESRPGLVTVTSSQST(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 1 ESRPGLVTVTSSQSTPAK 18 1 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 0 ESRPGLVTVTSSQS(0.101)T(0.899)PAK 84.159 0.0087268 27778000 3058.1 2364.1 2895.9 2310.2 2322.6 2468.9 2402.6 1327.5 2592.3 3192.2 TRUE FALSE FALSE 2699.634154 2436.935119 3052.461114 2404.419942 2151.266425 2421.809846 2495.269087 1478.617234 2485.444297 3173.212652 0.850757403 0.767970945 0.961946597 0.757724176 0.677945874 0.763204396 0.786354197 0.46596853 0.783258032 1 11.63172849 -2.893595539 0.147393661 1.051581118 1.57E-14 0.42215959 0.106555922 17.7836424 0.288771471 0.232446296 3.694630819 0.001277628 2.893595539 -1.051581118 ISS(ph)TPTTETIR ddPTM_HeLa_CUDC101_4h_R1 1 ISSTPTTETIR 11 0 A0A075B754;Q96QE3-2;Q96QE3 A0A075B754 ATAD5 ATPase family AAA domain-containing protein 5 1 0 IS(0.008)S(0.603)T(0.353)PT(0.033)T(0.003)ETIR 145.23 0.0010752 9366500 2144.1 1994 2132.2 1713 2310.9 2173.1 2142.6 2563.9 2041.9 2676.3 TRUE FALSE FALSE 1892.771848 2055.432777 2247.473182 1782.863544 2140.429511 2131.651738 2225.2408 2855.764012 1957.732018 2660.381249 0.711466392 0.772608354 0.844793649 0.670153402 0.804557434 0.801257992 0.836436808 1.073441641 0.735884009 1 11.37741729 -2.892511006 20.91426392 0.842905477 43.87542194 0 0.120245956 0 0 0.018171267 0 0.001280823 2.892511006 43.03251646 VIET(ph)PENDFK ddPTM_HeLa_CUDC101_4h_R1 2 VIETPENDFK 10 0 Q9H0G5;A0A024QZ33 Q9H0G5 NSRP1;CCDC55 Nuclear speckle splicing regulatory protein 1 1 0 VIET(1)PENDFK;VIET(1)PENDFK ; 145.81 0.003709 77519000 12837 10502.6 10455.7 10204.4 10223.2 9574.8 8955.9 6619.3 10740.7 12194.5 TRUE FALSE FALSE 11332.26632 10826.17266 11020.96677 10620.57954 9469.054903 9392.176643 9301.332063 7372.814356 10297.9638 12121.96657 0.934853784 0.893103656 0.90917317 0.876143279 0.781148409 0.774806347 0.767312136 0.608219327 0.849529137 1 13.56533615 -2.890309598 0.245686169 1.00251722 6.29E-18 0.756652534 0.051812175 2.906810772 0.080500529 0.016522712 0.996568675 0.001287332 2.890309598 -1.00251722 TLLTGDGGGEAT(ph)GSPLAQGK ddPTM_HeLa_CUDC101_4h_R1 2 TLLTGDGGGEATGSPLAQGK 20 0 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;H0Y2S9;H0Y7E2 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 TLLTGDGGGEAT(0.523)GS(0.477)PLAQGK;TLLTGDGGGEAT(0.652)GS(0.348)PLAQGK ; 327.02 8.63E-168 54667000 8676.8 7889 7196.6 7340.9 7542.8 7573.4 6792.4 5496.9 8907.3 8985.4 TRUE FALSE FALSE 7659.718657 8132.050739 7585.669965 7640.293632 6986.382671 7428.950013 7054.385143 6122.644877 8540.137324 8931.954441 0.857563561 0.910444718 0.849273249 0.855388782 0.782178494 0.831727262 0.789791886 0.685476501 0.956133104 1 13.12476018 -2.889223454 0.047632212 1.414854045 1.55E-13 0.837361431 0.034479996 89.46926659 0.470596883 4.247500125 11.22656503 0.001290555 2.889223454 -1.414854045 RVS(ph)QDLEVEKPDASPTSLQLR ddPTM_HeLa_CUDC101_4h_R1 1 RVSQDLEVEKPDASPTSLQLR 21 2 O94885 O94885 SASH1 SAM and SH3 domain-containing protein 1 1 0 RVS(1)QDLEVEKPDASPTSLQLR 52.498 0.034897 18440000 1492.6 1140.4 1296.3 1206.4 1366.6 1343.6 932.26 854.1 1417.5 938.36 TRUE FALSE FALSE 1317.639691 1175.534372 1366.381899 1255.602207 1265.788641 1317.973069 968.2175805 951.3272916 1359.07005 932.778593 1.412596409 1.260250161 1.464851262 1.346088146 1.357008673 1.412953812 1.037992925 1.019885425 1.457012479 1 9.865390869 -2.88389692 13.69640775 1.234418834 1.240619086 0 0.182755162 0 0 0.027390755 0 0.001306481 2.88389692 0.006200252 LRESTPGDS(ph)PSTVNK ddPTM_HeLa_CUDC101_4h_R1 2 LRESTPGDSPSTVNK 15 1 Q5T6F2 Q5T6F2 UBAP2 Ubiquitin-associated protein 2 1 0 LRESTPGDS(0.982)PS(0.007)T(0.01)VNK;LREST(0.026)PGDS(0.971)PS(0.003)TVNK ; 260.29 3.60E-69 75644000 8861.2 8755.4 8855.7 9364.3 9836.3 8306.3 7107.4 4249.8 9051.1 6779 TRUE FALSE FALSE 7822.503569 9025.143496 9334.465929 9746.21663 9110.695746 8147.871167 7381.534799 4733.580054 8678.009827 6738.678207 1.160836492 1.339304715 1.385207253 1.446309845 1.352000417 1.209120085 1.095398025 0.702449339 1.287791101 1 12.71824992 -2.882729051 13.77803904 1.145448933 1.155261813 0 0.217418061 0 0 0.030614792 0 0.001309999 2.882729051 0.00981288 GEQVSQNGLPAEQGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 GEQVSQNGLPAEQGSPR 17 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 0 GEQVSQNGLPAEQGS(1)PR;GEQVSQNGLPAEQGS(1)PR ; 235.37 1.78E-43 37591000 3966.8 2888.08 3050.13 2881.27 3179.23 3214.4 2552.76 1925.73 3287.4 3595.9 TRUE FALSE FALSE 3501.817717 2977.058322 3215.029254 2998.780645 2944.704537 3153.090676 2651.220808 2144.947319 3151.891981 3574.511427 0.979663316 0.832857408 0.899431802 0.838934413 0.823806161 0.882103957 0.74170159 0.600067272 0.881768612 1 11.80353035 -2.881434666 0.249099388 1.014633602 8.11E-17 0.667254546 0.062940367 5.704955713 0.159794566 0.031797874 2.01290925 0.001313909 2.881434666 -1.014633602 HSTSGT(ph)DEGEDGDEPDDGSNDVVDLLPR ddPTM_HeLa_CUDC101_4h_R1 2 HSTSGTDEGEDGDEPDDGSNDVVDLLPR 28 0 Q14008-2;Q14008;Q14008-3 Q14008-2 CKAP5 Cytoskeleton-associated protein 5 1 0 HS(0.015)T(0.057)S(0.22)GT(0.709)DEGEDGDEPDDGSNDVVDLLPR;HS(0.011)T(0.046)S(0.202)GT(0.742)DEGEDGDEPDDGSNDVVDLLPR ; 141.14 7.48E-16 21874700 1032.81 804.35 516.21 630.32 1062.64 871.51 867.6 1026.48 810.75 906.49 TRUE FALSE FALSE 911.7455774 829.1310701 544.117874 656.0271741 984.2511643 854.8873988 901.0636226 1143.330334 777.3305418 901.0981572 1.011816049 0.92013402 0.603838627 0.728030758 1.092279633 0.948717287 0.999961675 1.268818857 0.862648021 1 9.815540458 -2.881270481 14.25284892 0.971734479 1.073901036 0 0.177714272 0 0 0.023446545 0 0.001314406 2.881270481 0.102166557 TISHVIIGLK ddPTM_HeLa_CUDC101_4h_R1 2 TISHVIIGLK 10 0 Q9Y265;E7ETR0;Q9Y265-2 Q9Y265 RUVBL1 RuvB-like 1 0 0 ; ; 101.65 0.0043603 0 7788.8 6261.7 5476.8 6071 7046.8 6176.1 6018 5816.6 6363 5729.1 FALSE FALSE TRUE 6875.808671 6454.615555 5772.892374 6318.601621 6526.971603 6058.301183 6250.116276 6478.738232 6100.714447 5695.023058 1.207336406 1.1333783 1.013673222 1.109495353 1.146083437 1.063788701 1.097469881 1.137614048 1.071236127 1 12.47548597 -9.633089162 1.473585738 1.000378494 1.124201628 0.197643922 0.053611199 0.338708663 1.328047276 0.040586789 0.009364833 2.33E-10 9.633089162 0.123823134 HEIVDT(ph)PPGPEHLQDK ddPTM_HeLa_CUDC101_4h_R1 2 HEIVDTPPGPEHLQDK 16 0 A0A499FJD3;A0A3B3ISA1;Q96S15 A0A499FJD3 WDR24 WD repeat-containing protein 24 1 0 HEIVDT(1)PPGPEHLQDK;HEIVDT(1)PPGPEHLQDK ; 103.99 0.004176 16672900 7734.6 6526.3 6142.7 6532.5 6289.1 6200 5657.3 3960.2 6717.7 7354.8 TRUE FALSE FALSE 6827.961913 6727.367567 6474.792943 6798.923586 5825.165623 6081.74533 5875.503956 4411.01316 6440.793563 7311.053323 0.933923145 0.920163931 0.885616977 0.929951306 0.796761474 0.83185624 0.803646711 0.603334836 0.880966569 1 12.83586356 -2.876500148 0.29628018 0.985690187 3.06E-15 0.764657947 0.050531374 3.983032756 0.13464374 0.015855966 1.671968255 0.001328923 2.876500148 -0.985690187 YQEQGGEASPQS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 YQEQGGEASPQSR 13 0 B4DDD6;Q9UJU6-4;Q9UJU6-2;Q9UJU6-6;Q9UJU6-3 B4DDD6 DBNL Drebrin-like protein 1 0 YQEQGGEAS(0.086)PQS(0.914)R 88.78 0.0031228 0 566.53 462.47 593.62 430.24 459.54 608.69 353.42 294.11 694.32 634.91 TRUE FALSE FALSE 500.1222122 476.7181525 625.7128928 447.7870469 425.6406497 597.0802524 367.0515278 327.5902936 665.6998357 631.1335271 0.792419022 0.755336442 0.991411272 0.709496529 0.674406653 0.946044263 0.581575074 0.519050691 1.054768614 1 9.301801454 -2.876110085 0.10888908 1.107801286 2.24E-16 0.546539413 0.119605426 44.91709874 0.535756979 0.8829051 7.454922822 0.001330117 2.876110085 -1.107801286 NIIS(ph)PPWDFR ddPTM_HeLa_CUDC101_4h_R1 2 NIISPPWDFR 10 0 Q5T8C6;Q13042-4;Q13042-3;Q13042-2;Q13042 Q5T8C6 CDC16 Cell division cycle protein 16 homolog 1 0 NIIS(1)PPWDFR;NIIS(1)PPWDFR ; 129.74 0.0024498 16306000 5693.6 4419.1 4293.3 3944.2 4842 4429.2 3974.4 3014.2 4820.9 4650.6 TRUE FALSE FALSE 5026.204839 4555.247233 4525.408785 4105.061524 4484.815307 4344.72039 4127.693939 3357.324344 4622.180462 4622.938024 1.087231716 0.985357625 0.978903191 0.887976759 0.970122308 0.939818005 0.892872437 0.726231744 0.99983613 1 12.17459431 -2.868062411 0.39905046 1.037340395 1.58E-19 0.741468337 0.046460239 5.706082981 0.266029288 0.013772523 3.609092135 0.001354995 2.868062411 -1.037340395 TSSSSPANS(ph)DVEIDGIGR ddPTM_HeLa_CUDC101_4h_R1 1 TSSSSPANSDVEIDGIGR 18 0 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 0 TS(0.001)S(0.001)S(0.011)S(0.011)PANS(0.977)DVEIDGIGR 106.89 0.00064304 3443400 1215.1 767.77 1007 810.6 1154.3 1118.1 840.09 901.73 1181.5 931.28 TRUE FALSE FALSE 1072.66782 791.4240837 1061.441466 843.6597717 1069.149589 1096.774105 872.4925527 1004.379298 1132.79807 925.7407051 1.158713033 0.854909025 1.146586145 0.911334855 1.154912583 1.18475303 0.942480489 1.084946673 1.223666696 1 9.854464349 -2.864414714 13.29845443 1.060806049 1.062302318 0 0.122761065 0 0 0.014291493 0 0.001366423 2.864414714 0.001496268 GVGQADWT(ph)PDLGLR ddPTM_HeLa_CUDC101_4h_R1 1 GVGQADWTPDLGLR 14 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 GVGQADWT(1)PDLGLR 130.47 0.004004 20902000 2525.8 2297.5 2361.2 2233.2 2130.2 2057.1 2056.5 1282.1 2402.8 2833.2 TRUE FALSE FALSE 2229.729553 2368.283252 2488.853614 2324.279549 1973.05939 2017.864245 2135.819894 1428.049082 2303.755567 2816.348 0.79170953 0.840905759 0.883716648 0.825281374 0.700573718 0.716482567 0.758365051 0.50705704 0.817993929 1 11.4596099 -2.861188887 0.097119585 1.143482678 1.21E-15 0.566028958 0.081118937 34.26456187 0.363377712 0.776657101 5.346469981 0.001376611 2.861188887 -1.143482678 (ac)S(ph)SNSASAANGNDSKK ddPTM_HeLa_CUDC101_4h_R1 2 SSNSASAANGNDSKK 15 1 A6NLN1;K7ES59 A6NLN1 PTBP1 1 0 S(0.445)S(0.445)NS(0.109)AS(0.001)AANGNDSKK;S(0.333)S(0.333)NS(0.333)ASAANGNDSKK ; 130.01 6.04E-33 4301400 1878.48 984.56 1389.03 1458.4 1537.59 1344.76 1257.81 794.74 1599.26 1675.36 TRUE FALSE FALSE 1658.287422 1014.893127 1464.125163 1517.879856 1424.165049 1319.110944 1306.324153 885.2099892 1533.337826 1665.394884 0.995732266 0.609400891 0.879145947 0.911423393 0.855151569 0.792070971 0.784393038 0.531531589 0.920705258 1 10.70164858 -2.855158084 0.202632033 1.038665432 1.84E-16 0.399573311 0.113749656 15.23887445 0.339080011 0.119837264 4.370927922 0.00139586 2.855158084 -1.038665432 TIVEELLADSEFRR ddPTM_HeLa_CUDC101_4h_R1 2 TIVEELLADSEFRR 14 1 Q5QJE6 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 0 0 ; ; 156.52 7.33E-05 3595400 2821.3 2997.9 2903.4 2658.7 3142.8 3172.7 2890.6 2772.5 3305.2 4101.1 FALSE FALSE TRUE 2490.591491 3090.261746 3060.366586 2767.133278 2910.961905 3112.186034 3002.09141 3088.110193 3168.958257 4076.706475 0.610932258 0.758029003 0.750695839 0.678766866 0.71404746 0.763406945 0.736401168 0.757501236 0.777332947 1 11.99318837 -9.441141033 1.130276471 1.002620596 0.713261594 0.279653144 0.080167083 0.168199379 0.378758233 0.038770773 0.009326525 3.62E-10 9.441141033 -0.289359002 TK(ac)ELQVNISQQGEK ddPTM_HeLa_CUDC101_4h_R1 1 TKELQVNISQQGEK 14 1 Q8NDH2 Q8NDH2 CCDC168 Coiled-coil domain-containing protein 168 0 1 TK(1)ELQVNISQQGEK 56.956 0.035027 0 371.05 178.98 0 58.099 413.85 411.44 244.31 286 411.43 0 FALSE TRUE FALSE 327.5560815 184.4941617 0 60.46852835 383.32111 403.5924675 253.7331185 318.5570839 394.4706813 0 0 TK(ac)FENLCK ddPTM_HeLa_CUDC101_4h_R1 2 TKFENLCK 8 1 P07900;P07900-2;Q58FG0 P07900 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 0 1 ; TK(1)FENLCK;TK(1)FENLCK 89.247 0.030536 3765500 1521.2 959.15 412.897 802.81 1298.74 938.09 1136.39 888.91 609.01 305.73 FALSE TRUE FALSE 1342.887242 988.7002746 435.2194608 835.5520618 1202.934538 920.1974962 1180.220943 990.0999213 583.90635 303.9115044 4.418678539 3.253250569 1.432059841 2.749326859 3.958173746 3.027846867 3.883436218 3.257856011 1.921303872 1 8.247507478 -5.872400942 7.032132193 2.61052186 3.517387735 0.230325191 0.936994969 0.436100409 25.51327681 0.199994936 0.364601066 1.34E-06 5.872400942 0.906865875 TKDGVVEITGK ddPTM_HeLa_CUDC101_4h_R1 2 TKDGVVEITGK 11 1 P04792 P04792 HSPB1 Heat shock protein beta-1 0 0 ; ; 118.87 0.0055824 40640000 5874.3 5111 5168.5 4900 5499.3 5436.4 4590.5 4324.7 5112.5 5748.7 FALSE FALSE TRUE 5185.723459 5268.463852 5447.924744 5099.84318 5093.627595 5332.709728 4767.557123 4817.006367 4901.760586 5714.506477 0.907466547 0.921945556 0.953349999 0.892438078 0.891350393 0.93318815 0.834290265 0.842943548 0.857774964 1 12.48041319 -12.8523205 0.016875103 2.072463356 6.96E-07 0 0.049341006 1319.182235 2.016638106 152.9472097 99.95588934 1.41E-13 12.8523205 -2.07246266 TKDGVVEITGK(ac)HEER ddPTM_HeLa_CUDC101_4h_R1 1 TKDGVVEITGKHEER 15 2 P04792 P04792 HSPB1 Heat shock protein beta-1 0 1 TKDGVVEITGK(1)HEER 153.2 0.00040069 6212300 4680.1 3685.8 3659.8 3923.4 5537.1 4647 4618.6 5069.6 4226.2 4005.4 FALSE TRUE FALSE 4131.505773 3799.355129 3857.659858 4083.41321 5128.639164 4558.366217 4796.740949 5646.702772 4051.994247 3981.575703 1.037655964 0.954234055 0.968877687 1.025577187 1.288092842 1.144864887 1.204734333 1.418208065 1.0176861 1 11.95912377 -3.930872026 0.495184727 1.005121943 1.783598792 0.761632795 0.071405026 2.07556884 0.271721599 0.015209684 1.00720592 0.000117254 3.930872026 0.778476849 NKS(ph)PAAVTEPETNK ddPTM_HeLa_CUDC101_4h_R1 1 NKSPAAVTEPETNK 14 1 B7ZBC9;B7ZBC8;O75449 B7ZBC9 KATNA1 Katanin p60 ATPase-containing subunit A1 1 0 NKS(0.951)PAAVT(0.048)EPET(0.001)NK 129.93 0.0043105 15455000 1053.1 807.75 967.79 881.02 867.8 917.43 635.2 655.01 1052.1 994.98 TRUE FALSE FALSE 929.6572144 832.6358201 1020.111655 916.9518037 803.7841229 899.9315513 659.6998768 729.5736908 1008.731993 989.0618147 0.939938435 0.841844066 1.031393225 0.927092513 0.812673294 0.909884031 0.666995598 0.737642157 1.019887713 1 9.94991688 -2.85178846 0.325204434 0.983408484 1.80E-10 0.649513493 0.068647209 6.764391924 0.250183178 0.022085707 3.175425075 0.001406733 2.85178846 -0.983408484 GADNDGSGSES(ph)GYTT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 2 0 GADNDGS(0.008)GS(0.37)ES(0.615)GY(0.012)T(0.265)T(0.73)PK 97.081 0.015407 50340000 4157.4 4018.2 3732.4 3887.2 3635 3595.6 3214.5 2629.4 4428.1 4156.9 TRUE FALSE FALSE 3670.075874 4141.995979 3934.184834 4045.736818 3366.853292 3527.019921 3338.484342 2928.720268 4245.571844 4132.174574 0.888170577 1.002376813 0.952085824 0.979081775 0.814789703 0.85355056 0.807924322 0.708760052 1.027442517 1 12.01268549 -2.851047946 0.405859931 0.959759493 4.51E-17 0.757549203 0.049283971 6.208528874 0.291385016 0.013096757 3.720669558 0.001409133 2.851047946 -0.959759493 DIYLS(ph)PDR ddPTM_HeLa_CUDC101_4h_R1 2 DIYLSPDR 8 0 Q15696 Q15696 ZRSR2 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 1 0 DIYLS(1)PDR;DIYLS(1)PDR ; 122.94 0.0069061 52085000 7282 6320.1 5489.3 5587.7 5924.7 5519.7 4844.7 3847.2 6298.1 7110 TRUE FALSE FALSE 6428.414999 6514.81479 5786.068162 5815.590558 5487.646685 5414.420919 5031.561702 4285.149697 6038.489652 7067.709404 0.909547158 0.921771739 0.818662431 0.822839512 0.776439207 0.766078599 0.711908401 0.606299644 0.854377183 1 12.78702701 -2.846153403 0.193454026 1.022504022 3.54E-23 0.793069075 0.04859308 3.283806161 0.06940539 0.027182338 0.881792477 0.001425104 2.846153403 -1.022504022 LADILS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 LADILSPR 8 0 Q96PE2 Q96PE2 ARHGEF17 Rho guanine nucleotide exchange factor 17 1 0 LADILS(1)PR;LADILS(1)PR;LADILS(1)PR ;; 107.55 0.012726 96019000 16062.2 12860.1 12548.6 12457.8 13987.3 12225.1 12368.2 9106 14770.3 13336.4 TRUE FALSE FALSE 14179.41326 13256.30444 13227.01527 12965.88293 12955.48475 11991.92659 12845.24562 10142.59023 14161.46198 13257.0745 1.069573326 0.999941913 0.99773259 0.978035005 0.977250656 0.904568092 0.968935161 0.765070018 1.068219235 1 13.69447482 -2.843054259 0.481359021 1.029640707 8.40E-16 0.784598243 0.038394702 5.156690976 0.285611855 0.008245385 4.100923218 0.00143531 2.843054259 -1.029640707 SNGELSES(ph)PGAGK ddPTM_HeLa_CUDC101_4h_R1 2 SNGELSESPGAGK 13 0 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;A0A0A0MR81;F5H176 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 1 0 SNGELS(0.355)ES(0.645)PGAGK;SNGELS(0.012)ES(0.988)PGAGK ; 152.94 0.00021769 140042000 10579.1 9021.5 8751.9 8301.4 9303.6 9190.3 8550.1 6735.7 8719.3 9213.2 TRUE FALSE FALSE 9339.033935 9299.441722 9225.054187 8639.966974 8617.291963 9015.01034 8879.880221 7502.464861 8359.886763 9158.399477 1.019723365 1.015400316 1.007277987 0.943392674 0.940916804 0.984343428 0.969588654 0.819189519 0.912810888 1 13.16087978 -2.839264499 0.626751635 1.005760413 4.84E-37 0.496702135 0.041265833 6.234503605 0.427598432 0.005303867 6.770065197 0.00144789 2.839264499 -1.005760413 TAVPS(ph)PVEAAAASDPAAAR ddPTM_HeLa_CUDC101_4h_R1 3 TAVPSPVEAAAASDPAAAR 19 0 Q147X3;Q147X3-2;J3KNC2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 TAVPS(1)PVEAAAASDPAAAR;TAVPS(1)PVEAAAASDPAAAR;T(0.006)AVPS(0.994)PVEAAAASDPAAAR ;; 201.9 2.88E-17 58567000 12445.8 10901.2 9718.5 10481.9 12017.9 10513.7 9670.6 8128.6 11015.7 11209.5 TRUE FALSE FALSE 10986.92219 11237.05305 10243.91151 10909.39719 11131.36346 10313.16869 10043.59828 9053.926967 10561.62818 11142.8254 0.986008647 1.008456352 0.919328011 0.979051255 0.998971362 0.925543417 0.901351132 0.812534222 0.947841127 1 13.44382747 -2.83831261 0.570500115 0.991846681 5.65E-12 0.756408896 0.028446313 4.195783274 0.268467795 0.004422658 3.985811785 0.001451067 2.83831261 -0.991846681 KGMLGAS(ph)PNRPDS(ph)S(ph)GK ddPTM_HeLa_CUDC101_4h_R1 1 KGMLGASPNRPDSSGK 16 2 H3BMY2;H3BSK2;H3BM86;H3BRU1;Q5XKK7-2;Q5XKK7-3;Q5XKK7 H3BMY2 FAM219B Protein FAM219B 3 0 KGMLGAS(1)PNRPDS(1)S(1)GK 58.885 0.025661 9630800 1117.3 881.67 904.78 942.77 980.9 1098.5 827.05 991.13 1073 990.22 TRUE FALSE FALSE 986.3317877 908.8332077 953.6951436 981.2202356 908.5409612 1077.547943 858.9495955 1103.956233 1028.770486 984.3301274 1.002033525 0.92330122 0.968877328 0.996840601 0.923004321 1.09470178 0.872623495 1.121530473 1.045147819 1 9.942998442 -2.833797779 16.1908836 0.992477966 0.991394014 0 0.073877864 0 0 0.008012269 0 0.00146623 2.833797779 -0.001083952 SSSQPSSCCS(ph)DPSKPGGNVEGATQSLAEQMR ddPTM_HeLa_CUDC101_4h_R1 1 SSSQPSSCCSDPSKPGGNVEGATQSLAEQMR 31 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 S(0.003)S(0.001)S(0.011)QPS(0.115)S(0.082)CCS(0.684)DPS(0.082)KPGGNVEGAT(0.018)QS(0.005)LAEQMR 78.274 4.59E-06 52642000 1598.6 1319.3 1263.7 1337.2 1339.4 1721.9 1748.1 5394.5 1762.3 574.59 TRUE FALSE FALSE 1411.214531 1359.946069 1332.019444 1391.736796 1240.59513 1689.057626 1815.524803 6008.588075 1689.657248 571.1723131 2.470733435 2.380973374 2.332079854 2.436632105 2.172015523 2.957176998 3.178593851 10.51974673 2.958226807 1 9.157782238 -2.831137973 1.14533431 1.89064557 199.9999998 0.93433195 0.638670645 6.640486476 0.457720291 0.106777585 3096.843158 0.001475238 2.831137973 198.1093543 up YDS(ph)DGDKSDDLVVDVSNEDPATPR ddPTM_HeLa_CUDC101_4h_R1 2 YDSDGDKSDDLVVDVSNEDPATPR 24 1 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 Y(0.165)DS(0.698)DGDKS(0.136)DDLVVDVSNEDPATPR;Y(0.15)DS(0.813)DGDKS(0.037)DDLVVDVSNEDPATPR ; 116.04 1.29E-07 98993000 4730.2 4097.6 4472.6 4239.9 4328 4106.6 3573.69 2876.57 4903.9 4824.1 TRUE FALSE FALSE 4175.733127 4223.842199 4714.402285 4412.821448 4008.732063 4028.273447 3711.52842 3204.027101 4701.759166 4795.406039 0.870777801 0.880810126 0.983108051 0.92021852 0.835952583 0.840027604 0.773975841 0.668145111 0.980471545 1 12.22743726 -2.830179881 0.364759937 0.949635205 1.57E-15 0.819426904 0.041694777 6.178414708 0.255580155 0.015318913 3.227564499 0.001478496 2.830179881 -0.949635205 GELVAS(ph)LEDAS(ph)LMGLYVDMNAT(ph)T(ph)VTVQSPR ddPTM_HeLa_CUDC101_4h_R1 1 GELVASLEDASLMGLYVDMNATTVTVQSPR 30 0 H3BM07;H0YBK5;G8JLG8;Q8N9H9-2;Q8N9H9 H3BM07 C1orf127 Uncharacterized protein C1orf127 4 0 GELVAS(0.998)LEDAS(0.949)LMGLY(0.053)VDMNAT(0.583)T(0.583)VT(0.605)VQS(0.229)PR 50.055 0.0066138 17189000 2206.5 2278 2075.7 2119.6 2544.1 2563.5 2395.9 2645.1 2577.3 2222.2 TRUE FALSE FALSE 1947.857415 2348.18248 2187.918621 2206.04645 2356.426812 2514.605509 2488.310666 2946.207492 2471.062603 2208.982256 0.881789525 1.063015547 0.990464552 0.998670969 1.066747732 1.13835478 1.126451179 1.333739773 1.11864303 1 11.10916611 -2.827067667 0.4295097 0.948663721 2.455445659 0.606312328 0.071964515 4.787353727 0.234245325 0.013696125 4.851228546 0.001489129 2.827067667 1.506781938 GLFS(ph)DEEDSEDLFSSQSASK ddPTM_HeLa_CUDC101_4h_R1 4 GLFSDEEDSEDLFSSQSASK 20 0 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 GLFS(1)DEEDSEDLFSSQSASK;GLFS(1)DEEDSEDLFSSQSASK;GLFS(0.995)DEEDS(0.005)EDLFSSQSASK;GLFS(1)DEEDSEDLFSSQSASK ;;; 219.21 1.23E-33 41824600 20605.3 18422.3 16627.3 16153.3 18235.2 17246.5 14788.4 12380 20240.7 18370.1 TRUE FALSE FALSE 18189.97797 18989.86923 17526.22213 16812.10139 16890.02563 16917.55175 15358.79354 13789.28916 19406.36978 18260.83383 0.996119791 1.039923445 0.959771186 0.920664497 0.924931785 0.926439171 0.841078435 0.755129217 1.062731853 1 14.15646502 -2.824678498 0.422422014 1.002816485 1.07E-11 0.876835885 0.030768277 2.986719084 0.143462881 0.005853611 1.974181648 0.001497344 2.824678498 -1.002816485 S(ph)SIEDAQCPGLPDLIEENHVVNK ddPTM_HeLa_CUDC101_4h_R1 2 SSIEDAQCPGLPDLIEENHVVNK 23 0 Q15398-1;Q15398;Q15398-3 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 S(0.5)S(0.5)IEDAQCPGLPDLIEENHVVNK;S(0.5)S(0.5)IEDAQCPGLPDLIEENHVVNK ; 142.01 1.65E-07 68659000 6639.3 5358.1 5862 5374.9 5502.2 6242.6 5409 4107 6620.9 5060 TRUE FALSE FALSE 5861.051319 5523.17671 6178.917452 5594.111654 5096.313668 6123.532806 5617.626942 4574.524279 6347.9837 5029.902895 1.165241445 1.098068258 1.228436727 1.112170905 1.013203192 1.217425651 1.116846003 0.909465724 1.262048956 1 12.29631483 -2.821041175 14.49095501 1.091364814 0.592550279 0 0.108601126 0 0 0.013129009 0 0.001509937 2.821041175 -0.498814536 RPS(ph)PQPSPR ddPTM_HeLa_CUDC101_4h_R1 2 RPSPQPSPR 9 1 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 RPS(0.999)PQPS(0.001)PR;RPS(0.997)PQPS(0.003)PR ; 104.94 0.0069929 71614000 843.49 819.86 1147.91 701.16 1084.26 810.15 784.81 711.41 908.93 878.84 TRUE FALSE FALSE 744.6173808 845.1189148 1209.969487 729.7563355 1004.2763 794.6977386 815.0803846 792.3940388 871.4635207 873.6126206 0.852342747 0.96738405 1.385018323 0.835331723 1.149567069 0.909668336 0.932999782 0.907031355 0.997539985 1 9.770849888 -2.820196206 14.16895191 0.965361128 0.986439734 0 0.157960603 0 0 0.02042861 0 0.001512878 2.820196206 0.021078605 TKPSDEEMLFIYGHYK ddPTM_HeLa_CUDC101_4h_R1 1 TKPSDEEMLFIYGHYK 16 1 B8ZWD1;A0A0A0MTI5;P07108;P07108-3;P07108-2;P07108-4;P07108-5;P07108-6 B8ZWD1 DBI Acyl-CoA-binding protein 0 0 67.846 0.020677 32127000 3930.2 3066.3 3165.6 3063.2 2736.1 3454.3 2993.3 2687.8 3279.4 3451.2 FALSE FALSE TRUE 3469.507914 3160.769069 3336.741911 3188.130536 2534.263354 3388.414983 3108.752584 2993.768288 3144.221744 3430.672109 1.011320174 0.921326483 0.972620468 0.929302025 0.73870754 0.987682552 0.906164298 0.872647747 0.916503135 1 11.74427553 -6.706481401 1.197614983 1.005086577 0.88672549 0.183760065 0.068313565 0.314746135 0.905427976 0.011018557 0.017140298 1.97E-07 6.706481401 -0.118361087 SISSPSVS(ph)SETMDKPVDLSTR ddPTM_HeLa_CUDC101_4h_R1 1 SISSPSVSSETMDKPVDLSTR 21 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 S(0.001)IS(0.018)S(0.143)PS(0.143)VS(0.311)S(0.311)ET(0.074)MDKPVDLSTR 67.252 0.024541 23533000 3103.2 2541.2 2389.6 2400.6 2607.8 2574.3 2261.6 1353.3 2552.8 3091.2 TRUE FALSE FALSE 2739.4476 2619.49136 2518.789004 2498.506844 2415.427789 2525.199517 2348.83067 1507.354202 2447.572504 3072.813405 0.891511211 0.852473292 0.819701255 0.813100737 0.786063933 0.821787458 0.764390921 0.490545309 0.796524937 1 11.58534445 -2.817951614 0.195495257 1.009617996 4.18E-17 0.532776619 0.083511488 8.859976557 0.187479892 0.069725033 2.380682347 0.001520717 2.817951614 -1.009617996 AFGSGIDIKPGT(ph)PPIAGR ddPTM_HeLa_CUDC101_4h_R1 3 AFGSGIDIKPGTPPIAGR 18 1 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3;A0A2R8Y7F4;A0A2R8YET2;H7C5N8;A0A2R8Y424 E7EPN9 PRRC2C Protein PRRC2C 1 0 AFGS(0.033)GIDIKPGT(0.967)PPIAGR;AFGSGIDIKPGT(1)PPIAGR;AFGSGIDIKPGT(1)PPIAGR ;; 139.12 0.0013958 1221470000 9443.73 7877.58 7819.58 6941.97 8494.48 7202.57 7635.13 5817.65 8177.78 7508.62 TRUE FALSE FALSE 8336.750285 8120.278903 8242.330148 7225.093542 7867.859134 7065.192978 7929.619522 6479.90776 7840.688447 7463.958394 1.116934185 1.087931962 1.104284042 0.967997564 1.054113477 0.946574539 1.062387959 0.868159684 1.050473225 1 12.86572523 -2.817113243 0.642378329 1.057377388 1.62E-14 0.459923893 0.055097065 13.37186807 0.908267884 0.010605611 15.8426283 0.001523655 2.817113243 -1.057377388 GLPPS(ph)MER ddPTM_HeLa_CUDC101_4h_R1 11 GLPPSMER 8 0 P38159;P38159-2;H3BUY5 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 0 GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER ;;;;;;;;;; 154.85 0.0014718 761015800 60666.6 53187.1 53685.4 52598.4 52984.2 49909.8 48702.6 36383.61 54882 57019.4 TRUE FALSE FALSE 53555.35311 54825.73151 56587.79511 54743.5901 49075.66113 48957.85372 50581.0756 40525.37309 52619.74073 56680.24607 0.944868042 0.967281113 0.998368903 0.965831906 0.865833593 0.863755137 0.892393366 0.714982307 0.928361191 1 15.7905584 -2.816457963 0.435822178 0.979366841 4.26E-16 0.782838415 0.037892268 4.664837836 0.229832173 0.008284358 3.13489228 0.001525956 2.816457963 -0.979366841 TKPYIQVDIGGGQTK ddPTM_HeLa_CUDC101_4h_R1 2 TKPYIQVDIGGGQTK 15 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 ; ; 161.08 0.00052523 5727500 7436.4 6543.7 7243.1 6505.3 7846 7112.6 7284.2 7207.7 6599.2 6803.9 FALSE FALSE TRUE 6564.716465 6745.303641 7634.683895 6770.614252 7267.216211 6976.939005 7565.154034 8028.195433 6327.178183 6763.4301 0.9706194 0.997319931 1.128818334 1.001062205 1.074486777 1.03156814 1.118538068 1.187000577 0.935498422 1 12.72353939 -1 0.318694803 0.985381409 2.876084416 0.645670286 0.045097001 22.26703793 0.283995844 0.014471249 24.84500952 0.1 1 1.890703007 LSEGPAAMAGPGS(ph)PPRR ddPTM_HeLa_CUDC101_4h_R1 3 LSEGPAAMAGPGSPPRR 17 1 Q8N2Y8 Q8N2Y8 RUSC2 Iporin 1 0 LSEGPAAMAGPGS(1)PPRR;LSEGPAAMAGPGS(1)PPRR;LSEGPAAMAGPGS(1)PPRR ;; 69.581 0.013893 74182600 5179.7 4716.87 4739.46 4895.23 5792.98 5289.57 5160.37 5900.48 5376.5 6464.7 TRUE FALSE FALSE 4572.543418 4862.191174 4995.689544 5094.878638 5365.643407 5188.680265 5359.4072 6572.166793 5154.878394 6426.247677 0.711541734 0.756614345 0.777388267 0.792823261 0.834957455 0.807419901 0.833987028 1.022706737 0.802159931 1 12.64976087 -2.816252026 14.84098321 0.845134882 87.35525765 0 0.095927688 0 0 0.016297188 0 0.00152668 2.816252026 86.51012276 S(ph)MDLGIADETK ddPTM_HeLa_CUDC101_4h_R1 2 SMDLGIADETK 11 0 Q5VWV2;Q8TEW0-11;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-8 Q5VWV2 PARD3 Partitioning defective 3 homolog 1 0 S(1)MDLGIADETK;S(1)MDLGIADETK ; 134.56 0.0033995 41637000 12950.4 11135.5 10606.2 9438.9 9735.6 10648.5 8468.3 7561.8 11489 13191.8 TRUE FALSE FALSE 11432.37374 11478.57156 11179.60325 9823.85914 9017.424184 10445.3976 8794.925168 8422.604746 11015.41856 13113.33459 0.871812861 0.875335826 0.852537025 0.749150346 0.687653024 0.796547784 0.670685638 0.642293132 0.840016586 1 13.67874697 -2.814710418 0.115926908 1.12104122 9.56E-15 0.660972921 0.061617239 12.70653053 0.15870164 0.228431936 2.249995709 0.001532109 2.814710418 -1.12104122 SLESLADGGS(ph)ASPIKDQPVMAVK ddPTM_HeLa_CUDC101_4h_R1 2 SLESLADGGSASPIKDQPVMAVK 23 1 A0A3B3ITU7;Q9HB96 A0A3B3ITU7 FANCE Fanconi anemia group E protein 1 0 SLESLADGGS(0.5)AS(0.5)PIKDQPVMAVK;SLES(0.001)LADGGS(0.582)AS(0.417)PIKDQPVMAVK ; 114.64 2.33E-06 94886000 3972.6 2914.6 2907.8 3396.5 3549.5 3147 3086 2581.8 2933.9 3190.5 TRUE FALSE FALSE 3506.93785 3004.395371 3065.004464 3535.023951 3287.660457 3086.976218 3205.028054 2875.701676 2812.9634 3171.522764 1.105758373 0.947303739 0.966414146 1.114614087 1.036618906 0.973341971 1.010564417 0.906725851 0.886944099 1 11.63095998 -2.802202951 0.713846514 1.040721239 1.21E-11 0 0.072167309 18.16459535 1.276565978 0.010026186 24.36480539 0.001576874 2.802202951 -1.040721239 TLAEK(ac)SR ddPTM_HeLa_CUDC101_4h_R1 1 TLAEKSR 7 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 0 1 TLAEK(1)SR 110.12 0.0080815 1505900 786.85 460.08 477.54 551.91 544.44 591.99 634.57 515.58 271.94 294.38 FALSE TRUE FALSE 694.6166358 474.2545195 503.3572569 574.4192754 504.2777459 580.6987771 659.0455775 574.2715432 260.7305181 292.6290147 2.373710743 1.620668135 1.720120807 1.962960768 1.723266391 1.984419685 2.252153903 1.962455923 0.890993391 1 8.192929012 -9.476411379 1.16776712 0.990138487 1.980542411 0.752195689 0.228409904 0.226863385 0.544573149 0.184256345 0.043382905 3.34E-10 9.476411379 0.990403924 S(ph)PSFGEDYYGPSR ddPTM_HeLa_CUDC101_4h_R1 1 SPSFGEDYYGPSR 13 0 H3BUL5;H3BVF8;H3BQG1;P49761-3;P49761-1;P49761;H3BRT8;H3BQR7;H3BV35;H3BRK0;P49761-2 H3BUL5 CLK3 Dual specificity protein kinase CLK3 1 0 S(0.965)PS(0.035)FGEDYYGPSR 94.781 0.013143 5439900 503.28 491.84 589.15 483.48 437.68 470.14 537.05 286.47 449.25 459.97 TRUE FALSE FALSE 444.2862813 506.9930074 621.0012311 503.1984042 405.3932184 461.1728628 557.7641984 319.0805868 430.7317249 457.234078 0.971682345 1.108825942 1.358169176 1.100526904 0.886620744 1.008614373 1.219865765 0.697849531 0.942037669 1 8.836789122 -2.799145633 14.60288274 1.020535505 0.633250905 0 0.172943527 0 0 0.021657334 0 0.001588014 2.799145633 -0.3872846 SISS(ph)PSVSSETMDKPVDLSTR ddPTM_HeLa_CUDC101_4h_R1 2 SISSPSVSSETMDKPVDLSTR 21 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 S(0.006)IS(0.168)S(0.687)PS(0.125)VS(0.005)S(0.008)ET(0.002)MDKPVDLSTR;S(0.003)IS(0.095)S(0.427)PS(0.427)VS(0.037)S(0.011)ETMDKPVDLSTR ; 173.45 9.98E-10 104850000 3800.9 2946.7 2356.1 2595.81 3239.1 3000.1 2629.33 1621.98 3097 3354.4 TRUE FALSE FALSE 3355.364264 3037.484334 2483.477893 2701.678352 3000.158046 2942.878091 2730.744139 1806.619647 2969.340349 3334.44788 1.006272818 0.910940715 0.744794336 0.810232593 0.899746571 0.882568328 0.818949415 0.541804734 0.890504352 1 11.70323218 -2.792658241 0.235020335 1.028346053 6.27E-17 0.476253878 0.092793788 11.09386764 0.281726008 0.06396611 3.743225215 0.001611914 2.792658241 -1.028346053 TLDGFK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 TLDGFKK 7 1 P07237;H7BZ94;H0Y3Z3;I3L0S0 P07237 P4HB Protein disulfide-isomerase 0 1 TLDGFK(1)K 101.28 0.017004 4493300 5518.5 2048.4 2673.1 2287.8 5638.6 4824.5 5782.4 3646.9 4912.1 3540 FALSE TRUE FALSE 4871.629796 2111.508776 2817.615872 2381.106373 5222.651712 4732.480701 6005.429105 4062.048355 4709.621159 3518.943923 1.384401088 0.600040473 0.800699282 0.676653685 1.484153151 1.344858232 1.706599831 1.154337336 1.338362095 1 11.78092681 -5.692031084 24.99999909 1.073996653 1.437238245 0.351088176 0.281469099 56.23355333 20253.57972 0.045088402 0.090176804 2.03E-06 5.692031084 0.363241592 TLDMIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 TLDMIKK 7 1 P14625;Q58FF3 P14625;Q58FF3 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein 0 1 TLDMIK(1)K 104.37 0.012887 697060 1473.2 405 402.01 380.88 1169.2 669.44 1329 840.13 812.75 406.64 FALSE TRUE FALSE 1300.513729 417.47757 423.7438766 396.4139327 1082.950445 656.6715474 1380.259975 935.7670033 779.248101 404.2212872 3.217331126 1.032794618 1.048296787 0.980685444 2.679102956 1.624534799 3.414614764 2.314986946 1.927776012 1 8.659001489 -9.720448062 1.634326046 1.00054525 2.200808226 0 0.895809258 0.536135603 2.587877195 0.681399535 0.149345524 1.90E-10 9.720448062 1.200262977 SES(ph)LIDASEDSQLEAAIR ddPTM_HeLa_CUDC101_4h_R1 2 SESLIDASEDSQLEAAIR 18 0 C9JAT7;O94888 C9JAT7 UBXN7 UBX domain-containing protein 7 1 0 S(0.001)ES(0.999)LIDASEDSQLEAAIR;SES(0.448)LIDAS(0.34)EDS(0.212)QLEAAIR ; 266.29 4.45E-71 14388200 977.73 1131.11 892.99 763.3 1270.93 1482.32 1883.84 4102.1 792.16 952.33 TRUE FALSE FALSE 863.1219715 1165.958158 941.2677405 794.4306733 1177.176026 1454.047216 1956.50034 4569.066483 759.5068295 946.6654988 0.911749686 1.231647461 0.994298136 0.839188366 1.243497336 1.535967264 2.066728261 4.826484633 0.802296936 1 9.886710934 -2.786956554 0.919899423 0.975677233 55.54723866 0.983714385 0.147065532 1.978160178 0.139200026 0.021288654 194.0627164 0.001633215 2.786956554 54.57156143 up AGGSAALSPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 AGGSAALSPSK 11 0 Q92522 Q92522 H1FX Histone H1x 1 0 AGGS(0.001)AALS(0.221)PS(0.778)K 112.84 0.0061761 667950000 12322 8137.5 6072.7 9911.5 7650.2 8158.3 6767.5 5532.2 4670.5 4871 TRUE FALSE FALSE 10877.63384 8388.20673 6401.008531 10315.73381 7085.859987 8002.69402 7028.524742 6161.963286 4477.980013 4842.027075 2.246504133 1.732375015 1.32196876 2.130457689 1.463407758 1.652756975 1.451566592 1.272599924 0.924815154 1 12.24139543 -2.782745258 8.065589639 1.59789073 1.522543157 0 0.419210062 0 0 0.063777805 0 0.001649129 2.782745258 -0.075347573 ETAVPGPLGIEDISPNLS(ph)PDDKSFSR ddPTM_HeLa_CUDC101_4h_R1 2 ETAVPGPLGIEDISPNLSPDDKSFSR 26 1 Q12888;Q12888-3;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ETAVPGPLGIEDIS(0.014)PNLS(0.983)PDDKS(0.003)FSR;ETAVPGPLGIEDIS(0.185)PNLS(0.808)PDDKS(0.007)FS(0.001)R ; 125.12 1.69E-10 341740000 8729.7 9424.3 8272.6 7873.5 10301.6 8023.2 6754.8 6021.6 10293.4 7487.4 TRUE FALSE FALSE 7706.417799 9714.651512 8719.841779 8194.615362 9541.671492 7870.170828 7015.334899 6707.074604 9869.101695 7442.864612 1.035410182 1.305230179 1.171570656 1.101002879 1.281989125 1.057411526 0.942558446 0.901141557 1.325981623 1 12.86164228 -2.778967042 9.878674037 1.059060048 0.669756 0 0.154441921 0 0 0.018310069 0 0.001663539 2.778967042 -0.389304048 LQELAS(ph)PPAGRPTPAPR ddPTM_HeLa_CUDC101_4h_R1 1 LQELASPPAGRPTPAPR 17 1 Q8N3F8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 LQELAS(0.5)PPAGRPT(0.5)PAPR 119.23 0.0015734 8034700 5338 4452.8 4402.4 4498.6 4469.3 4078.3 4068.7 2713.4 4633 5162 TRUE FALSE FALSE 4712.287732 4589.98549 4640.407061 4682.072353 4139.608643 4000.513222 4225.631122 3022.282488 4442.025779 5131.296194 0.918342569 0.894507999 0.904334282 0.91245412 0.806737418 0.77963015 0.823501697 0.588990067 0.865673236 1 12.32510759 -2.777947673 0.270341327 0.984785399 6.81E-13 0.723310242 0.055642777 4.986673834 0.145867368 0.021124542 1.900037654 0.001667448 2.777947673 -0.984785399 IQDPTEDAEAEDT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 IQDPTEDAEAEDTPR 15 0 O96028-3;O96028;H0Y9L4;O96028-5 O96028-3;O96028-5 WHSC1 Histone-lysine N-methyltransferase NSD2 1 0 IQDPTEDAEAEDT(1)PR;IQDPTEDAEAEDT(1)PR ; 161.2 0.000274 117180000 6516.3 5826 5663.3 5506 6264.2 6067 4694.5 4102.1 6504.8 6528.1 TRUE FALSE FALSE 5752.469192 6005.492154 5969.475129 5730.558479 5802.102446 5951.282083 4875.568438 4569.066483 6236.669391 6489.270571 0.886458521 0.925449492 0.91989925 0.883082069 0.894107031 0.917095692 0.751327655 0.704095542 0.961074026 1 12.66384061 -2.77554156 0.390358115 0.951878153 1.18E-40 0.815791919 0.036814418 6.09620544 0.261550363 0.012311633 3.500903362 0.001676712 2.77554156 -0.951878153 AAMYDIIS(ph)SPSKDSTK ddPTM_HeLa_CUDC101_4h_R1 3 AAMYDIISSPSKDSTK 16 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 AAMYDIIS(0.355)S(0.355)PS(0.268)KDS(0.003)T(0.019)K;AAMYDIIS(0.935)S(0.064)PS(0.001)KDSTK;AAMYDIIS(0.585)S(0.393)PS(0.023)KDSTK ;; 172.43 2.93E-06 147110000 7578.33 5698.22 5194.04 5298.14 6686.15 5579.2 4853.84 4073.35 6512.19 6210.91 TRUE FALSE FALSE 6690.009645 5873.775404 5474.845514 5514.22105 6192.926035 5472.786056 5041.054235 4537.043699 6243.754772 6173.967231 1.083583601 0.951377807 0.886762969 0.893140641 1.003070765 0.886429398 0.816501618 0.734866825 1.011303517 1 12.59198211 -2.770330509 0.325123135 1.039438022 3.47E-11 0.703878454 0.053558976 7.123842898 0.252255842 0.022316768 3.575934162 0.001696952 2.770330509 -1.039438022 TLEEDEEELFK ddPTM_HeLa_CUDC101_4h_R1 3 TLEEDEEELFK 11 0 C9JJ34;P43487-2;P43487;F6WQW2;C9JDM3 C9JJ34 RANBP1 Ran-specific GTPase-activating protein 0 0 ;; ;; 250.75 8.46E-55 146337000 5403.95 4348.49 4545.34 4287.5 4864.51 5021.53 4723.63 4494.53 5160.74 4780.33 FALSE FALSE TRUE 4770.507173 4482.461823 4791.074829 4462.362782 4505.664789 4925.752682 4905.821991 5006.169128 4948.012113 4751.896385 1.003916497 0.943299571 1.008244802 0.939069883 0.948182457 1.036586719 1.032392459 1.053509741 1.041271045 1 12.21428766 -5.113383562 9.169807043 0.989962165 1.040844757 0.398782915 0.031635251 0.270635159 20.04976233 0.004157896 0.010633927 7.70E-06 5.113383562 0.050882592 S(ph)PAFTSR ddPTM_HeLa_CUDC101_4h_R1 1 SPAFTSR 7 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 0 S(1)PAFTSR 93.598 0.029322 17703000 1286.4 1081.8 839.07 1073.4 1013.7 976.69 1029.4 683.92 1121.3 1275.8 TRUE FALSE FALSE 1135.610142 1115.128976 884.4326622 1117.177892 938.9213706 958.0612655 1069.104303 761.7746883 1075.079539 1268.211485 0.895442247 0.879292601 0.697385785 0.880908196 0.740350787 0.755442824 0.843001594 0.600668498 0.84771314 1 10.30857963 -2.766531511 0.074651356 1.267781998 9.93E-09 0.38688939 0.085742224 57.32812033 0.457880276 1.747847322 8.157997046 0.001711861 2.766531511 -1.267781988 TQSSS(ph)CEDLPSTTQPK ddPTM_HeLa_CUDC101_4h_R1 2 TQSSSCEDLPSTTQPK 16 0 Q5JS72;O14936-5;A0A2U3TZM4;O14936-3;O14936-4;A0A2R8Y6F8;A0A2R8YFN5 Q5JS72 CASK 1 0 TQSS(0.025)S(0.975)CEDLPSTTQPK;TQS(0.002)S(0.02)S(0.978)CEDLPSTTQPK ; 256.67 9.87E-70 63757000 7362.6 6472.8 7058.2 6102 7505.7 6663.4 5544.8 5644.1 7461.4 6127.1 TRUE FALSE FALSE 6499.567189 6672.219296 7439.787642 6350.865935 6952.019464 6536.306747 5758.664793 6286.60153 7153.837934 6090.655737 1.067137509 1.095484556 1.221508482 1.042722854 1.141423808 1.073169627 0.945491757 1.032171543 1.174559562 1 12.57238185 -2.766420218 12.41961515 1.052876546 0.651012867 0 0.08268854 0 0 0.010330686 0 0.0017123 2.766420218 -0.401863679 TLEGELHDLR ddPTM_HeLa_CUDC101_4h_R1 7 TLEGELHDLR 10 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;H0YAB0;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ;;;;;; ;;;;;; 161.51 5.03E-05 369129100 31803.9 27779.71 26014.6 26916.2 32618.7 29898.9 27558.9 28457.14 30064 28093.8 FALSE FALSE TRUE 28075.89505 28635.56994 27421.02797 28013.95898 30212.48349 29328.6283 28621.856 31696.58579 28824.7492 27926.69683 1.005342495 1.02538335 0.981892994 1.003124686 1.081849517 1.050200404 1.024892281 1.134992297 1.032157486 1 14.76935732 -1 0.404272916 1.001379646 2.897209865 0.577278237 0.0280085 29.31599552 0.343965013 0.006119447 44.8986877 0.1 1 1.895830219 DTGS(ph)PPASEGPTDGSR ddPTM_HeLa_CUDC101_4h_R1 2 DTGSPPASEGPTDGSR 16 0 Q969R8 Q969R8 ITFG2 Integrin-alpha FG-GAP repeat-containing protein 2 1 0 DTGS(0.998)PPAS(0.002)EGPTDGSR;DT(0.007)GS(0.993)PPASEGPTDGSR ; 169.98 7.56E-07 31758000 2927.2 3077.3 3202.8 3159 3458 2777.8 2618.1 2451.8 3163.1 3014.5 TRUE FALSE FALSE 2584.078053 3172.107966 3375.953056 3287.837674 3202.910229 2724.818093 2719.080994 2730.903001 3032.715679 2996.56962 0.862345409 1.058579765 1.126605914 1.097200496 1.068858941 0.90931246 0.907397905 0.911343085 1.012062479 1 11.54909618 -2.765605551 10.29865263 0.967626071 0.694418694 0 0.092134227 0 0 0.01424388 0 0.001715515 2.765605551 -0.273207377 NS(ph)PFTR ddPTM_HeLa_CUDC101_4h_R1 1 NSPFTR 6 0 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 NS(1)PFTR 113.66 0.0090512 10186000 9432.4 5961 7597.3 7904 6686.6 6791.3 7767.5 3562.5 8096.9 8820.1 TRUE FALSE FALSE 8326.748371 6144.651344 8008.033019 8226.359284 6193.34284 6661.767268 8067.095077 3968.0406 7763.142355 8767.637653 0.949714017 0.700833176 0.913362679 0.938264058 0.706386724 0.759813251 0.92009905 0.452578078 0.885431477 1 13.09797246 -2.765504296 0.201413659 1.023428061 5.61E-15 0.373519669 0.125620037 16.6057486 0.355768073 0.121230316 4.691802492 0.001715915 2.765504296 -1.023428061 SRQPS(ph)GAGLCDISEGTVVPEDR ddPTM_HeLa_CUDC101_4h_R1 1 SRQPSGAGLCDISEGTVVPEDR 22 1 H0Y332;Q5T5C0-3;Q5T5C0-2;Q5T5C0 H0Y332 STXBP5 Syntaxin-binding protein 5 1 0 S(0.049)RQPS(0.951)GAGLCDISEGTVVPEDR 96.591 0.00013122 7362300 1449.7 1476 1329.4 1304.1 1692.4 1235.5 1148.6 750.42 1419.3 1050.2 TRUE FALSE FALSE 1279.768364 1521.473811 1401.271385 1357.286835 1567.555024 1211.934896 1192.901887 835.8447795 1360.795853 1043.953364 1.225886527 1.457415497 1.342273931 1.300141253 1.501556562 1.160909039 1.142677373 0.800653371 1.303502532 1 10.02784155 -2.765459333 13.6138032 1.173247066 1.179335215 0 0.205639437 0 0 0.029233829 0 0.001716092 2.765459333 0.006088149 HLAESESLLTS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 4 HLAESESLLTSPPK 14 0 Q14669;Q14669-2;Q14669-3;Q14669-4 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 HLAESESLLT(0.203)S(0.797)PPK;HLAESESLLT(0.14)S(0.86)PPK;HLAESESLLT(0.024)S(0.976)PPK;HLAESESLLT(0.185)S(0.815)PPK ;;; 126.83 0.00013755 34847700 16249.9 10759.9 10740.1 10674.2 13662.4 13245 10225.5 7398.1 13934.1 13580.6 TRUE FALSE FALSE 14345.11136 11091.39977 11320.74229 11109.54001 12654.55197 12992.37369 10619.90096 8240.2698 13359.7305 13499.82199 1.062614853 0.821596001 0.838584561 0.822939741 0.937386581 0.962410742 0.786669704 0.610398404 0.989622716 1 13.72065276 -2.761080299 0.263481877 1.036462556 4.62E-13 0.506947196 0.088686937 11.59676241 0.327722872 0.0533101 4.52040333 0.001733483 2.761080299 -1.036462556 DRCPLPCIPTLIGT(ph)PVK ddPTM_HeLa_CUDC101_4h_R1 2 DRCPLPCIPTLIGTPVK 17 1 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 0 DRCPLPCIPTLIGT(1)PVK;DRCPLPCIPT(0.001)LIGT(0.999)PVK ; 125.77 0.00033078 145303000 8115.7 7094.4 5729.7 6183.5 5729.9 5885.6 5105.3 3129.5 6314.7 2910.3 TRUE FALSE FALSE 7164.389949 7312.970055 6039.464913 6435.689857 5307.216693 5773.341986 5302.213131 3485.74963 6054.405393 2892.989406 2.476466016 2.527824692 2.087620819 2.224581204 1.83450955 1.995631914 1.832780003 1.204895401 2.092785193 1 11.49834532 -2.761010895 14.22239941 1.831294803 1.553612905 0 0.479645777 0 0 0.084322754 0 0.001733761 2.761010895 -0.277681899 VVVISSSEDS(ph)DAENSSSR ddPTM_HeLa_CUDC101_4h_R1 2 VVVISSSEDSDAENSSSR 18 0 P29590;P29590-5;P29590-11;P29590-12 P29590;P29590-11 PML Protein PML 1 0 VVVISSS(0.001)EDS(0.999)DAENSSSR;VVVISSS(0.001)EDS(0.999)DAENSSSR ; 255.93 2.73E-70 14010500 3550.2 3080.9 3291.7 3332.2 3917.7 2532.4 2513.1 1837.3 2220.74 2189.9 TRUE FALSE FALSE 3134.050938 3175.818877 3469.659259 3468.101519 3628.699076 2484.098689 2610.031109 2046.450805 2129.200157 2176.874377 1.439702249 1.458889365 1.593872065 1.593156479 1.666930859 1.141130933 1.198981042 0.940086771 0.978099692 1 11.08804244 -2.750002097 13.7164205 1.286667872 1.260790976 0 0.266902719 0 0 0.038791118 0 0.001778271 2.750002097 -0.025876895 S(ph)PGVAAAVAEDGGLKK ddPTM_HeLa_CUDC101_4h_R1 4 SPGVAAAVAEDGGLKK 16 1 E9PLH8;E9PM78;H0YD80;E9PLS2;E9PQV9;E9PM04;Q9BTE7 E9PLH8 DCUN1D5 DCN1-like protein;DCN1-like protein 5 1 0 S(1)PGVAAAVAEDGGLKK;S(1)PGVAAAVAEDGGLKK;S(1)PGVAAAVAEDGGLKK;S(1)PGVAAAVAEDGGLKK ;;; 155.37 5.45E-05 100818000 8465.4 7260.6 7252.9 6863.35 7927.8 6817 7141.8 5184.09 8557 7722.32 TRUE FALSE FALSE 7473.098645 7484.29048 7645.013713 7143.267079 7342.981988 6686.977083 7417.261618 5774.225851 8204.276838 7676.387297 0.973517666 0.974975622 0.995912975 0.930550636 0.95656742 0.871109915 0.966243798 0.752206165 1.068767966 1 12.90621179 -2.746240962 0.505433037 0.986945703 2.78E-21 0.672653078 0.046449969 5.955625244 0.317342479 0.006848931 4.927288395 0.001793738 2.746240962 -0.986945703 T(ph)SSPRSPPS(ph)SSEIFTPAHEENVR ddPTM_HeLa_CUDC101_4h_R1 1 TSSPRSPPSSSEIFTPAHEENVR 23 1 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 2 0 T(0.55)S(0.205)S(0.245)PRS(0.19)PPS(0.607)S(0.186)S(0.016)EIFTPAHEENVR 93.2 0.00024149 14398000 1496.9 1479.5 1189.2 1296.1 1743.5 1423 1310 1003.5 1649.5 1474.4 TRUE FALSE FALSE 1321.435651 1525.081641 1253.491749 1348.96056 1614.885479 1395.858646 1360.527139 1117.734384 1581.506912 1465.630203 0.901616007 1.040563737 0.855257859 0.920396262 1.101836927 0.952394842 0.928288142 0.762630561 1.079062719 1 10.51730542 -2.743450328 0.010137736 1.795869012 1.10E-06 0.155825179 0.090962306 17965.53818 19.52878347 1551.861746 1925.861238 0.001805301 2.743450328 -1.795867915 SPMFPALGEASS(ph)DDDLFQSAKPK ddPTM_HeLa_CUDC101_4h_R1 1 SPMFPALGEASSDDDLFQSAKPK 23 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;Q5SRD0 Q641Q2;A0A0A0MR88 FAM21A;FAM21C;FAM21D WASH complex subunit FAM21A;WASH complex subunit FAM21C;Putative WASH complex subunit FAM21 1 0 SPMFPALGEAS(0.059)S(0.941)DDDLFQSAKPK 110.06 5.00E-06 43624000 3745.7 3071.2 2699.5 2874.3 3087.3 3361.1 2629.5 2219.1 3135.7 3704.4 TRUE FALSE FALSE 3306.634724 3165.820032 2845.443136 2991.526378 2859.55603 3296.992617 2730.920696 2471.713374 3006.445119 3682.366064 0.897964696 0.859724421 0.77272142 0.812392447 0.776553982 0.895346242 0.741621188 0.671229674 0.816443848 1 11.84641734 -2.742101558 0.061240735 1.336718309 4.07E-12 0.255864178 0.076190177 70.72003405 0.461738396 2.603091716 9.376264299 0.001810917 2.742101558 -1.336718309 NFVFHTLS(ph)PVKAEAAK ddPTM_HeLa_CUDC101_4h_R1 2 NFVFHTLSPVKAEAAK 16 1 E7ESG2;Q9HAW4-2;Q9HAW4-3;Q9HAW4 E7ESG2 CLSPN Claspin 1 0 NFVFHT(0.09)LS(0.91)PVKAEAAK;NFVFHT(0.014)LS(0.986)PVKAEAAK ; 90.718 0.0047279 238450000 5589.2 5564.8 5130.4 4862.4 6196.6 4592.2 5093.8 3914.1 6089.4 4853.1 TRUE FALSE FALSE 4934.042449 5736.244892 5407.764943 5060.709689 5739.489163 4504.611436 5290.269572 4359.665323 5838.392355 4824.233545 1.022761938 1.189047926 1.120958364 1.049018386 1.189720421 0.933746551 1.096603123 0.903701133 1.210221748 1 12.23608404 -2.734943694 13.92025303 1.038081106 0.454442503 0 0.107916393 0 0 0.012005348 0 0.001841011 2.734943694 -0.583638603 ESDTKNEVNGTSEDIKSEGDT(ph)QSN ddPTM_HeLa_CUDC101_4h_R1 1 ESDTKNEVNGTSEDIKSEGDTQSN 24 2 O95232 O95232 LUC7L3 Luc7-like protein 3 1 0 ESDTKNEVNGTSEDIKS(0.378)EGDT(0.476)QS(0.145)N 90.964 9.66E-05 111760000 2129.9 1974 2101 1692.7 2557.1 1950.9 2251.6 2274.5 2473.5 2574.6 TRUE FALSE FALSE 1880.236351 2034.8166 2214.586415 1761.735622 2368.467827 1913.689833 2338.444966 2533.419886 2371.541283 2559.286165 0.734672182 0.795071934 0.865314104 0.688369924 0.925440797 0.747743593 0.913709846 0.989893167 0.9266417 1 11.32152575 -2.716922282 14.91239428 0.858380931 87.35035746 0 0.104915962 0 0 0.016107735 0 0.001919012 2.716922282 86.49197653 S(ph)APAS(ph)PTHPGLMS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SAPASPTHPGLMSPR 15 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 3 0 S(1)APAS(1)PTHPGLMS(1)PR 171.25 9.99E-07 20688000 3014.5 2819.1 2112.8 2204.5 2618 2621.6 2066.1 1546.3 2935.5 2848.5 TRUE FALSE FALSE 2661.14488 2905.95313 2227.024359 2294.409039 2424.875356 2571.597348 2145.790169 1722.324542 2814.497448 2831.556995 0.939816816 1.026273931 0.786501689 0.810299437 0.856375259 0.908191978 0.757812812 0.608260595 0.993975206 1 11.46737985 -2.710468814 0.259567846 0.996751057 4.23E-16 0.696295054 0.068571734 8.894447241 0.24211146 0.038489288 3.294449693 0.001947741 2.710468814 -0.996751057 GGS(ph)PQMDDIK ddPTM_HeLa_CUDC101_4h_R1 2 GGSPQMDDIK 10 0 A0A3B3ITG6;A0A3B3IUB1;Q13144 A0A3B3ITG6 EIF2B5 Translation initiation factor eIF-2B subunit epsilon 1 0 GGS(1)PQMDDIK;GGS(1)PQMDDIK ; 148.96 0.00055769 68920000 8241.7 7147.3 6745 7380.8 6747.4 6653.5 5634.2 4712.3 7658.8 8167.8 TRUE FALSE FALSE 7275.62042 7367.499841 7109.655103 7681.820927 6249.657745 6526.595573 5851.512981 5248.729184 7343.101022 8119.217562 0.896098714 0.907415005 0.875657666 0.946128228 0.769736455 0.803845386 0.720699124 0.646457512 0.904409934 1 12.98712499 -2.707478379 0.247440781 0.983854519 6.02E-16 0.826761737 0.043137317 5.272734149 0.136473753 0.024552699 1.822561134 0.001961199 2.707478379 -0.983854519 TLGEDDPWLDDTAAWIER ddPTM_HeLa_CUDC101_4h_R1 3 TLGEDDPWLDDTAAWIER 18 0 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 0 0 ;; ;; 291.2 7.76E-104 18503400 2525.25 2481.23 2790.82 2392.9 2643.01 2737.25 2173.62 2395.17 3185.77 2779.87 FALSE FALSE TRUE 2229.244023 2557.673755 2941.700171 2490.492805 2448.040418 2685.041517 2257.457252 2667.826471 3054.451212 2763.33521 0.806722259 0.925574916 1.064546987 0.901263371 0.885900635 0.971666958 0.816932106 0.965437151 1.105349507 1 11.43219487 TLGLGEEWR ddPTM_HeLa_CUDC101_4h_R1 2 TLGLGEEWR 9 0 O60568;H7C2A8;C9JU11 O60568 PLOD3 "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3" 0 0 ; ; 117.81 0.035164 7377800 3953.5 3669.2 3360.2 3230 4163.7 3940.8 3677.6 3542.7 3637.5 3609.9 FALSE FALSE TRUE 3490.076723 3782.243703 3541.862576 3361.733361 3856.552146 3865.635806 3819.446264 3945.986648 3487.56071 3588.428154 0.972592058 1.054011266 0.987023405 0.936826158 1.074719064 1.077250439 1.064378636 1.099642093 0.971890912 1 11.80913632 -5.708740358 12.23744327 0.989198734 1.077900671 0.709181631 0.028820379 0.369854669 85.02686859 0.004128163 0.008254886 1.96E-06 5.708740358 0.088701937 TLGPVMYGK(ac)LPR ddPTM_HeLa_CUDC101_4h_R1 2 TLGPVMYGKLPR 12 1 Q6ZRI6-2;Q6ZRI6;H3BN41;H3BRS2;H3BT66 Q6ZRI6-2 C15orf39 Uncharacterized protein C15orf39 0 1 ; TLGPVMYGK(1)LPR;TLGPVMYGK(1)LPR 143.4 0.00024094 2734700 265.98 321.86 142.51 440.51 502.04 484.89 253.19 389.79 51.523 0 FALSE TRUE FALSE 234.8022276 331.7761251 150.2145217 458.4759018 465.0055094 475.6415311 262.9556231 434.162118 49.39920013 0 0 EGLISQDGS(ph)SLEALLR ddPTM_HeLa_CUDC101_4h_R1 1 EGLISQDGSSLEALLR 16 0 J3KMZ8;Q92785;Q92785-2 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 EGLIS(0.002)QDGS(0.499)S(0.499)LEALLR 100.69 0.0041362 9763500 1730.6 1852.4 1590.1 1882.2 2592.8 2828 3120.1 4106.7 1708.2 1703.8 TRUE FALSE FALSE 1527.741691 1909.470248 1676.065616 1958.964252 2401.53431 2774.060612 3240.443302 4574.190128 1637.787273 1693.665722 0.902032598 1.127418607 0.989608276 1.156641613 1.41795059 1.637903263 1.913272059 2.700763243 0.967007392 1 10.72593344 -2.707166335 0.474813707 0.945556813 9.771260593 0.983373923 0.069512146 1.421692303 0.069619726 0.015701178 9.795581483 0.001962608 2.707166335 8.82570378 up ETFS(ph)SAEGTVDKDTTIMELR ddPTM_HeLa_CUDC101_4h_R1 2 ETFSSAEGTVDKDTTIMELR 20 1 P46100-4;P46100;P46100-5;P46100-3;P46100-2;A0A096LNL9;P46100-6;A0A096LNW1 P46100-4 ATRX Transcriptional regulator ATRX 1 0 ET(0.064)FS(0.825)S(0.075)AEGT(0.036)VDKDTTIMELR;ET(0.057)FS(0.798)S(0.145)AEGTVDKDTTIMELR ; 89.043 0.0011815 9040000 1729.57 1149.67 1528.44 1095.16 1651.42 1791.23 1657.91 2200.4 1599.5 1373.33 TRUE FALSE FALSE 1526.832426 1185.08997 1611.07209 1139.825358 1529.598037 1757.065272 1721.856144 2450.884642 1533.567933 1365.161372 1.118426332 0.868095153 1.180133076 0.834938185 1.120452181 1.287075146 1.261283962 1.79530764 1.123360186 1 10.41485578 -2.706356365 0.773301852 1.038406216 9.286727316 0.791820052 0.116462131 7.030563221 0.439491327 0.017452887 84.8788997 0.001966272 2.706356365 8.2483211 LPSSPVY(ph)EDAASFK ddPTM_HeLa_CUDC101_4h_R1 1 LPSSPVYEDAASFK 14 0 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 1 0 LPSS(0.002)PVY(0.998)EDAASFK 138.63 0.0033309 19746000 1680.9 1499 1259.9 1346.1 1620.9 1224.4 940.1 1084.7 1193.6 1707.9 TRUE FALSE FALSE 1483.86745 1545.182413 1328.014005 1400.999776 1501.329436 1201.04661 976.3599719 1208.177863 1144.399303 1697.741335 0.874024458 0.910140068 0.782223992 0.825213917 0.88430988 0.707437927 0.57509348 0.711638363 0.67407165 1 10.72940095 -2.705020987 0.166048942 1.031506744 9.05E-13 0.10616194 0.115084463 12.01768335 0.207784227 0.115257809 2.7832369 0.001972327 2.705020987 -1.031506744 QPSPS(ph)PSPTER ddPTM_HeLa_CUDC101_4h_R1 2 QPSPSPSPTER 11 0 P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-4;P29590-14;P29590-10;P29590-11;P29590-12;P29590-13;H3BT57;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 1 0 QPS(0.058)PS(0.803)PS(0.135)PT(0.004)ER;QPS(0.032)PS(0.965)PS(0.003)PTER ; 144.51 0.0011353 99082000 2136.02 1875.37 2147.79 2018.98 1994.7 1739.88 1933.44 1187.95 1838.1 2297.81 TRUE FALSE FALSE 1885.638974 1933.147927 2263.906024 2101.322731 1847.554955 1706.694688 2008.013428 1323.181426 1762.33274 2284.142524 0.825534726 0.846334196 0.991140439 0.919961302 0.808861503 0.74719273 0.879110392 0.57929022 0.771551128 1 11.15743696 -2.699950299 0.33435413 0.932658804 1.10E-76 0.386431593 0.092269871 11.83335789 0.415101982 0.028888668 5.572246238 0.001995491 2.699950299 -0.932658804 TLHLQTGNLLNWGR ddPTM_HeLa_CUDC101_4h_R1 1 TLHLQTGNLLNWGR 14 0 P48507-2;P48507 P48507-2 GCLM Glutamate--cysteine ligase regulatory subunit 0 0 164.53 3.73E-05 1908000 609.49 655.05 469.76 625.82 764.16 692.16 408.73 555.44 572.14 479.67 FALSE FALSE TRUE 538.0465061 675.2313141 495.1566465 651.3436446 707.7894392 678.9582012 424.494853 618.6690444 548.556147 476.8169015 1.128413243 1.41612286 1.038462867 1.366024658 1.484405098 1.42393904 0.89026805 1.297498143 1.150454494 1 8.897291565 -7.799092224 1.024265823 1.028386521 1.270787284 0.148090281 0.180064873 0.463949908 1.025859846 0.044973618 0.04031818 1.59E-08 7.799092224 0.242400763 TLHPAVHAGILAR ddPTM_HeLa_CUDC101_4h_R1 2 TLHPAVHAGILAR 13 0 C9JLK0;P31939-2;P31939 C9JLK0 ATIC Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase 0 0 ; ; 105.03 0.0032015 7114800 5023.7 4599.1 3765.3 3860.7 4917.5 4160.1 4523.9 3988.7 4388.5 3161.8 FALSE FALSE TRUE 4434.829501 4740.79282 3968.863507 4018.156033 4554.745822 4080.753024 4698.388338 4442.757485 4207.604173 3142.993473 1.411020907 1.508368649 1.262765431 1.278448736 1.449174445 1.298365096 1.4948769 1.413543338 1.338725075 1 11.61792356 -9.197946394 0.757363293 0.976623636 1.390504715 0.13446359 0.132059316 0.294360106 0.278764956 0.074967576 0.017169057 6.34E-10 9.197946394 0.413881079 TLHPDLGTDKDK(ac)EQWK ddPTM_HeLa_CUDC101_4h_R1 2 TLHPDLGTDKDKEQWK 16 2 P00338-3;P00338;P00338-4;P00338-2;P00338-5 P00338-3 LDHA L-lactate dehydrogenase A chain 0 1 ; TLHPDLGTDK(0.046)DK(0.954)EQWK;TLHPDLGTDK(0.174)DK(0.826)EQWK 72.898 0.016133 23079700 24202.6 9015.4 9306.9 6899.6 22739 18969 23691.4 19185.7 20455.7 16137.1 FALSE TRUE FALSE 21365.60792 9293.153788 9810.059166 7180.995511 21061.58927 18607.19793 24605.18523 21369.72254 19612.50739 16041.11581 1.331927789 0.579333377 0.611557156 0.447661846 1.312975327 1.159969054 1.533882401 1.332184294 1.222639847 1 13.96948688 -5.158543233 2.192692425 1.024777004 1.414166465 0.266925341 0.306714187 0.446837454 4.121807578 0.051723159 0.170054646 6.94E-06 5.158543233 0.389389461 TLHPDLGTDKDKEQWK ddPTM_HeLa_CUDC101_4h_R1 1 TLHPDLGTDKDKEQWK 16 2 P00338-3;P00338;P00338-4;P00338-2;P00338-5 P00338-3 LDHA L-lactate dehydrogenase A chain 0 0 66.784 0.018842 110780000 5877.5 5633.6 5868 5621 6585.9 5785.3 5344.1 5042.4 6264.5 7062.2 FALSE FALSE TRUE 5188.54836 5807.164539 6185.24183 5850.248676 6100.071278 5674.955041 5550.223727 5616.406434 6006.274658 7020.19372 0.739089057 0.827208589 0.881064266 0.833345761 0.868932044 0.808375847 0.790608343 0.800035819 0.855571071 1 12.77729513 -9.469928824 1.181545634 1.001016838 0.813478719 0.246167647 0.05745571 0.21157009 0.523825879 0.032565093 0.007838346 3.39E-10 9.469928824 -0.18753812 TLHSDDEGTVLDDSR ddPTM_HeLa_CUDC101_4h_R1 1 TLHSDDEGTVLDDSR 15 0 E9PMH2;O00170 E9PMH2 AIP AH receptor-interacting protein 0 0 115.09 0.0014653 25843000 5927.7 5515.5 7375.3 5774.6 7248.7 5979.4 6812.7 7760.9 7063.7 7399.3 FALSE FALSE TRUE 5232.863992 5685.426018 7774.031027 6010.113148 6713.977842 5865.352907 7075.468121 8644.369485 6772.531296 7355.288635 0.711442372 0.772971164 1.05693079 0.817114521 0.912809568 0.797433411 0.961956556 1.175259044 0.920770296 1 12.84456624 -4.345710659 2.914392957 0.865026852 1.201220186 0.449923325 0.100140532 0.273625734 3.547229995 0.017256977 0.192832424 4.51E-05 4.345710659 0.336193333 TLK(ac)IPAMTIAK ddPTM_HeLa_CUDC101_4h_R1 3 TLKIPAMTIAK 11 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 ;; TLK(1)IPAMTIAK;TLK(1)IPAMTIAK;TLK(1)IPAMTIAK 109.24 0.0093452 2828520 4855.5 2800.54 1549.55 3208.58 2920.52 3129.49 2762.56 2217.48 1487.02 745.54 FALSE TRUE FALSE 4286.34565 2886.821318 1633.32336 3339.439761 2705.079058 3069.800192 2869.112865 2469.90896 1425.724406 741.1054949 5.78371862 3.895290667 2.203901295 4.506024829 3.650059373 4.14219057 3.871396022 3.332735996 1.923780644 1 9.533535112 -6.220865075 24.96923806 3.302267298 3.898381197 0.093583803 1.254088031 2033.024767 1251114.185 0.275740765 0.457260851 6.01E-07 6.220865075 0.596113899 TLK(ac)MIQPSASGSLVGR ddPTM_HeLa_CUDC101_4h_R1 3 TLKMIQPSASGSLVGR 16 1 H7C608;E2QRF9;O75496;C9K0U5 H7C608 GMNN Geminin 0 1 ;; TLK(1)MIQPSASGSLVGR;TLK(1)MIQPSASGSLVGR;TLK(1)MIQPSASGSLVGR 137.39 0.0052992 2818100 748.27 872.37 531.66 798.06 1003.46 1025.34 858.1 776.96 395.78 710.55 FALSE TRUE FALSE 660.5589249 899.2466857 560.4031478 830.6083363 929.436755 1005.783348 891.1972044 865.4059858 379.4657809 706.323617 0.93520719 1.273136936 0.793408481 1.175960022 1.315879482 1.423969585 1.261740629 1.225225895 0.537240681 1 9.464185526 -6.018628914 5.155265339 0.983697617 1.306557047 0.49026635 0.185719533 0.087541135 6.777261072 0.017205331 0.030021356 9.58E-07 6.018628914 0.32285943 TLLAK(ac)NLPYK ddPTM_HeLa_CUDC101_4h_R1 2 TLLAKNLPYK 10 1 P19338 P19338 NCL Nucleolin 0 1 ; TLLAK(1)NLPYK;TLLAK(1)NLPYK 103.88 0.0086942 729530 1411.45 1001.45 535.7 740.73 628.68 1036.71 918.2 900.86 342.087 162.98 FALSE TRUE FALSE 1246.001971 1032.303487 564.6615624 770.9401711 582.3035289 1016.936484 953.6152816 1003.410261 327.9860291 162.0105877 7.690867543 6.371827311 3.485337411 4.758578942 3.594231322 6.276975464 5.886129388 6.193485717 2.024472806 1 7.339944289 -5.248495656 23.45754014 4.359255477 6.095590452 0.191416385 1.829773364 711.7010167 1289786.641 0.363327617 0.91869555 5.64E-06 5.248495656 1.736334975 AYILVT(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 2 AYILVTPLK 9 0 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 1 0 AYILVT(1)PLK;AYILVT(1)PLK ; 140.16 0.0088903 85923000 9332.4 8281 8092.9 8416.3 8066.7 7974.9 7599.2 5476.7 6323.4 9127.9 TRUE FALSE FALSE 8238.470219 8536.127795 8530.426654 8759.553092 7471.635612 7822.79207 7892.30369 6100.14539 6062.746776 9073.606845 0.907959796 0.940764565 0.940136243 0.965388212 0.823447141 0.862148008 0.869808867 0.672295537 0.668173845 1 13.14746043 -2.696968214 0.379235443 0.963665552 5.77E-30 0.118033753 0.102519128 6.508556423 0.258082818 0.012617448 3.70062083 0.00200924 2.696968214 -0.963665552 TLLEQLDDDQ ddPTM_HeLa_CUDC101_4h_R1 2 TLLEQLDDDQ 10 0 O75400-2;O75400-3;O75400 O75400-2 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 0 ; ; 186.3 1.53E-10 92373000 15750.7 14258.9 12719.1 12697.2 15187.6 13623.3 14063.5 13480.3 14661.4 14224.7 FALSE FALSE TRUE 13904.42682 14698.19981 13406.73302 13215.0467 14067.24101 13363.45825 14605.93391 15014.84286 14057.05089 14140.09085 0.983333627 1.03946997 0.948136272 0.934580042 0.994847993 0.945075841 1.032944842 1.061863253 0.994127339 1 13.78750377 -4.567951979 7.164530268 0.985791907 1.05496259 0.450561637 0.029985721 0.123650468 15.62936457 0.004137079 0.015926227 2.70E-05 4.567951979 0.069170683 TLLIK(ac)TVETR ddPTM_HeLa_CUDC101_4h_R1 2 TLLIKTVETR 10 1 P08670 P08670 VIM Vimentin 0 1 ; TLLIK(1)TVETR;TLLIK(1)TVETR 133.91 0.0015631 3162000 696.72 624.68 879.58 840.32 800.75 809.08 667.27 757.24 1185.74 872.22 FALSE TRUE FALSE 615.0515378 643.9256504 927.1327554 874.5918818 741.6802678 793.648147 693.0068274 843.4411407 1136.863295 867.0319966 0.709375825 0.742678071 1.069317809 1.008719269 0.855424333 0.915362005 0.799286336 0.972791251 1.311212619 1 9.759941425 -6.776800054 24.9993217 0.849919999 0.929158902 0 0.178028261 519.5566653 845570.2637 0.021910957 0.028855734 1.67E-07 6.776800054 0.079238903 FLEQS(ph)MDIEDLK ddPTM_HeLa_CUDC101_4h_R1 2 FLEQSMDIEDLK 12 0 O95239;O95239-2;Q2VIQ3 O95239 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B 1 0 FLEQS(1)MDIEDLK;FLEQS(1)MDIEDLK ; 175.6 4.63E-07 4965300 2337.5 2050.39 1859.65 1920.77 2006.3 2029.67 1777.19 1424.28 2205.05 2090.55 TRUE FALSE FALSE 2063.501793 2113.560086 1960.188304 1999.107303 1858.299246 1990.957426 1845.736814 1586.414278 2114.156906 2078.115316 0.992967896 1.017056209 0.943252903 0.961980929 0.894223353 0.958059166 0.888178245 0.763390879 1.017343402 1 11.02106 -2.690406446 0.442909492 0.997725746 9.81E-13 0.842195735 0.029456263 4.335409515 0.197470165 0.006157104 3.102851775 0.002039828 2.690406446 -0.997725746 DYDDMS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 11 DYDDMSPR 8 0 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR ;;;;;;;;;; 174.86 9.94E-06 13578879000 77684 68832.3 70119.1 66489.9 70575.2 63452.8 60142.4 48309.6 76738.5 74454 TRUE FALSE FALSE 68577.99928 70952.94158 73909.95064 69201.64552 65369.0081 62242.54356 62462.11251 53808.96959 73575.30655 74011.1443 0.926590177 0.958679159 0.998632724 0.93501656 0.883231961 0.840988802 0.843955503 0.727038747 0.994111188 1 16.1754549 -2.683218049 0.381883059 0.974595271 2.37E-15 0.89224492 0.027387674 4.641726479 0.183676508 0.00879446 2.69855509 0.002073872 2.683218049 -0.974595271 EGLTS(ph)IEEVTK ddPTM_HeLa_CUDC101_4h_R1 1 EGLTSIEEVTK 11 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 EGLT(0.042)S(0.958)IEEVTK 137.95 0.0015235 5762500 2294.7 1892.1 2409.9 2072.7 2294.7 2347.7 2681 3686.6 2251.7 2061.7 TRUE FALSE FALSE 2025.718745 1950.393358 2540.186484 2157.233665 2125.424553 2302.921534 2784.407068 4106.267642 2158.883973 2049.436917 0.988426981 0.951672795 1.239455805 1.052598227 1.037077324 1.123685006 1.358620529 2.003607727 1.053403477 1 11.00101187 -2.679806973 0.851586268 1.009204682 15.4378344 0.93346573 0.076988448 4.530280191 0.268898919 0.012115786 109.0521439 0.002090225 2.679806973 14.42862972 up NPEAALSPT(ph)FR ddPTM_HeLa_CUDC101_4h_R1 2 NPEAALSPTFR 11 0 B4E349;F5H6D8;B4DTN4;Q86U44 B4E349 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 1 0 NPEAALS(0.082)PT(0.918)FR;NPEAALS(0.091)PT(0.909)FR ; 132.97 0.0086423 89643000 4265.8 3778.8 3687.9 3630.3 3747.5 3737.6 3114 2701.2 4090.8 4019.2 TRUE FALSE FALSE 3765.769391 3895.220349 3887.279029 3778.359325 3471.054391 3666.311507 3234.108023 3008.693689 3922.175493 3995.29362 0.942551349 0.974952211 0.972964543 0.94570254 0.868785807 0.917657588 0.809479435 0.753059468 0.981698935 1 11.96408582 -2.679227232 0.393414764 0.979840992 2.55E-15 0.901564706 0.02426265 3.876811806 0.15736771 0.006890019 2.353197006 0.002093017 2.679227232 -0.979840992 IKMPKFS(ph)MPS(ph)LK ddPTM_HeLa_CUDC101_4h_R1 1 IKMPKFSMPSLK 12 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 IKMPKFS(1)MPS(1)LK 45.359 0.036189 14367000 700.88 1011.8 947.1 885.49 1121.5 1039.1 1121.5 1291.5 1114.4 1093.5 TRUE FALSE FALSE 618.7239089 1042.972359 998.3030908 921.6041096 1038.769179 1019.280899 1164.756631 1438.51914 1068.46396 1086.995813 0.56920542 0.959499886 0.918405645 0.847845133 0.9556331 0.93770453 1.071537366 1.32338977 0.982951311 1 10.08613067 -2.672048277 0.555617803 0.813453187 4.072762222 0.50329512 0.124896154 12.00973694 0.639035114 0.03090652 37.62733787 0.002127902 2.672048277 3.259309034 DHNSEDEDEDKY(ph)ADDIDMPGQNFDSK ddPTM_HeLa_CUDC101_4h_R1 1 DHNSEDEDEDKYADDIDMPGQNFDSK 26 1 O95391 O95391 SLU7 Pre-mRNA-splicing factor SLU7 1 0 DHNS(0.383)EDEDEDKY(0.617)ADDIDMPGQNFDSK 49.613 0.015501 8742700 1306.9 1201.3 1712.7 1439.4 1352.7 1710.1 1153.9 423.63 1300.2 1204 TRUE FALSE FALSE 1153.707163 1238.310629 1805.293743 1498.104954 1252.914016 1677.482692 1198.40631 471.8543268 1246.605206 1196.838554 0.963962231 1.034651353 1.508385351 1.251718495 1.046852987 1.401594798 1.001309914 0.394250607 1.041581758 1 10.22501284 -2.668846824 9.178696275 1.039261066 0.670797934 0 0.286579114 0 0 0.037116451 0 0.002143647 2.668846824 -0.368463132 GPASQFYITPSTSLS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 GPASQFYITPSTSLSPR 17 0 H0YIQ2;P49750-3;P49750-1;P49750 H0YIQ2 YLPM1 YLP motif-containing protein 1 1 0 GPASQFYITPS(0.003)T(0.011)S(0.156)LS(0.83)PR;GPASQFYITPS(0.007)T(0.025)S(0.355)LS(0.613)PR ; 159.4 4.83E-05 106688000 8225.7 7142.9 6560.1 7379.1 7787.8 7279.8 6574.7 5438 8832.3 7815.5 TRUE FALSE FALSE 7261.495915 7362.964283 6914.758849 7680.051593 7213.309509 7140.949944 6828.288381 6057.039939 8468.228856 7769.013058 0.934674181 0.947734832 0.890043407 0.988549194 0.928471796 0.919157928 0.878913233 0.779640849 1.090000595 1 12.92351562 -2.66762928 0.500633141 0.96644661 8.11E-37 0.604399574 0.049072261 6.898270512 0.340544751 0.006827599 5.612182763 0.002149665 2.66762928 -0.96644661 AES(ph)PESSAIESTQS(ph)TPQK ddPTM_HeLa_CUDC101_4h_R1 2 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 0 AES(0.936)PES(0.063)SAIESTQS(0.991)T(0.009)PQK;AES(0.997)PES(0.002)S(0.001)AIES(0.001)T(0.001)QS(0.755)T(0.243)PQK ; 195.45 1.18E-15 115733000 9962.2 7137.2 6900.3 6568 7946.8 7996 7087.5 4166 6661.8 9110.2 TRUE FALSE FALSE 8794.446018 7357.088672 7273.35109 6835.871429 7360.580396 7843.489622 7360.867249 4640.2406 6387.197784 9056.012125 0.971116855 0.81239828 0.803151651 0.754843449 0.812783849 0.86610856 0.812815525 0.512393373 0.705299164 1 13.14466017 -2.666364291 0.17007942 1.058237086 4.16E-15 0.052967021 0.125988358 15.82977082 0.276918696 0.146243149 3.865517151 0.002155935 2.666364291 -1.058237086 GGVGAPGSPST(ph)PPTR ddPTM_HeLa_CUDC101_4h_R1 1 GGVGAPGSPSTPPTR 15 0 Q9ULR3 Q9ULR3 PPM1H Protein phosphatase 1H 1 0 GGVGAPGS(0.182)PS(0.035)T(0.774)PPT(0.009)R 112.42 0.010097 5690400 2080.2 1461.5 1820.9 1547.1 1837.3 1568.7 1622 1211.1 1600.3 1725.8 TRUE FALSE FALSE 1836.362109 1506.527083 1919.343362 1610.197425 1701.766039 1538.779661 1684.561083 1348.966729 1534.334957 1715.534865 1.070431238 0.87816757 1.118801723 0.938597902 0.991974033 0.896967874 0.981945117 0.786324286 0.894377018 1 10.74444273 -2.662801465 0.460264297 1.027157491 7.92E-19 0.231089331 0.08128705 10.98599675 0.50594699 0.014026013 8.543169133 0.002173695 2.662801465 -1.027157491 TLNDELEIIEGMK ddPTM_HeLa_CUDC101_4h_R1 2 TLNDELEIIEGMK 13 0 P10809;E7EXB4;E7ESH4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 200.21 6.36E-16 41152000 6781.2 5725.3 4819.7 5504.7 5554.3 5441.9 5061.9 4631.4 5165.9 6129.2 FALSE FALSE TRUE 5986.318016 5901.689707 5080.267561 5729.205459 5144.570355 5338.104824 5257.139179 5158.619855 4952.959415 6092.743246 0.982532461 0.968642444 0.83382269 0.940332659 0.844376687 0.876141437 0.862852572 0.846682627 0.812927645 1 12.57287623 -6.869076498 5.282765611 0.990914928 0.870067099 0.078892903 0.06285885 0.059986427 2.588981547 0.004272168 0.005659866 1.35E-07 6.869076498 -0.120847829 TLNDELEIIEGMKFDR ddPTM_HeLa_CUDC101_4h_R1 1 TLNDELEIIEGMKFDR 16 1 P10809;E7EXB4;E7ESH4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 178.85 1.70E-07 19579000 1243.1 1565.6 1217.4 1362.3 2302.9 1549.6 1476.7 2051.3 1409 805.82 FALSE FALSE TRUE 1097.385702 1613.83428 1283.216326 1417.860482 2133.019655 1520.043962 1533.656814 2284.8117 1350.920424 801.0269468 1.369973516 2.014706605 1.601963993 1.770053415 2.662856304 1.89761901 1.91461326 2.852353107 1.686485616 1 9.645706966 -6.529913534 0.289567258 0.887475182 2.689053494 0.460257986 0.384512545 0.871891888 0.175222603 0.263664487 0.581080205 2.95E-07 6.529913534 1.801578313 T(ph)GSGQGPSSTGQPGR ddPTM_HeLa_CUDC101_4h_R1 1 TGSGQGPSSTGQPGR 15 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 T(0.744)GS(0.016)GQGPS(0.07)S(0.156)T(0.015)GQPGR 142.4 0.0018637 11734000 1336.5 1088.8 1366.8 1296.4 1126 979.64 1236.6 727.03 1015.2 979.19 TRUE FALSE FALSE 1179.837496 1122.344637 1440.693342 1349.272796 1042.937223 960.9549992 1284.296076 809.7921564 973.3530263 973.3657343 1.212121461 1.153055422 1.480115122 1.386193029 1.071475178 0.987249669 1.319438348 0.831950548 0.999986944 1 9.926838178 -2.660632326 14.57083511 1.13912477 0.615777324 0 0.19392428 0 0 0.025570077 0 0.002184579 2.660632326 -0.523347446 RRGNDPLTSS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 1 RRGNDPLTSSPGR 13 2 P49736;F8WDM3;C9J013;C9JZ21 P49736 MCM2 DNA replication licensing factor MCM2 1 0 RRGNDPLT(0.011)S(0.414)S(0.575)PGR 85.473 0.0097707 13884000 634.31 667.28 650.33 819.94 861.57 741.59 850.5 1167.5 778.84 238.46 TRUE FALSE FALSE 559.9571434 687.8381059 685.4888069 853.3806973 798.0136976 727.4454063 883.3040699 1300.403481 746.7358855 237.0416293 2.362273433 2.901760791 2.891849879 3.600130069 3.366555064 3.068850853 3.726366851 5.485970901 3.150230986 1 7.888996638 -2.655710871 0.1189662 3.92E-23 11.1473736 0.479810059 0.770617335 15.39449392 0.189126795 2.456454761 27.7131251 0.002209475 2.655710871 11.1473736 KY(ph)QTEQRS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 KYQTEQRSK 9 2 Q9UQB8;Q9UQB8-2;Q9UQB8-6;Q9UQB8-4;Q9UQB8-5;Q9UQB8-3;I3L4C2;I3L2M4;I3L526;I3L113;I3L327;I3L0M4;I3L1C8;I3L125 Q9UQB8 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 2 0 KY(1)QT(0.222)EQRS(0.778)K 70.942 0.033432 29112000 6536.1 7532.9 7610.5 7239.4 10420 7723.3 6101.8 3081.4 8057.7 6860.9 TRUE FALSE FALSE 5769.948266 7764.97972 8021.946651 7534.654023 9651.33736 7575.99092 6337.14847 3432.174121 7725.558195 6820.091062 0.846022174 1.138544874 1.176222807 1.104773229 1.41513321 1.110834277 0.929188249 0.503244618 1.132764669 1 12.73557529 -2.655433412 15.08963221 0.988076868 1.024850592 0 0.234284121 0 0 0.031585106 0 0.002210887 2.655433412 0.036773724 S(ph)PSKPLPEVTDEYK ddPTM_HeLa_CUDC101_4h_R1 1 SPSKPLPEVTDEYK 14 1 P05455;E7ERC4;E9PFL9;E9PGX9 P05455 SSB Lupus La protein 1 0 S(0.801)PS(0.199)KPLPEVTDEYK 84.895 0.011302 16133000 4143.6 3318.1 3756.2 3742.5 3151.6 3701.4 2957.5 2209.7 4286.2 4465.3 TRUE FALSE FALSE 3657.893489 3420.326728 3959.271534 3895.135326 2919.112747 3630.801962 3071.571766 2461.243316 4109.521022 4438.740197 0.82408371 0.770562497 0.891980913 0.877531722 0.657644426 0.817980283 0.691991788 0.554491411 0.925830492 1 12.11593455 -2.652887892 0.102480994 1.128532432 4.71E-14 0.672275017 0.073371609 34.14132885 0.362299155 0.654751472 5.457427912 0.002223884 2.652887892 -1.128532432 SSDPGPDIGVVEES(ph)PEKGDEISLRR ddPTM_HeLa_CUDC101_4h_R1 1 SSDPGPDIGVVEESPEKGDEISLRR 25 2 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 0 SSDPGPDIGVVEES(0.992)PEKGDEIS(0.008)LRR 65.887 0.00085535 20778000 2855.2 2955.1 2742.8 2891.3 3034.6 2827.6 2164.4 1750.2 2564.8 2373 TRUE FALSE FALSE 2520.517784 3046.143128 2891.084065 3009.219711 2810.743604 2773.668241 2247.881633 1949.435693 2459.077858 2358.88529 1.06852071 1.291348562 1.225614521 1.275695653 1.191555865 1.175838542 0.952942325 0.826422421 1.04247454 1 11.20388955 -2.652812739 10.64491029 1.080697145 0.701855564 0 0.146232423 0 0 0.021061691 0 0.002224269 2.652812739 -0.378841581 GADFLVTEVENGGSLGS(ph)K ddPTM_HeLa_CUDC101_4h_R1 2 GADFLVTEVENGGSLGSK 18 0 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BQ34 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 1 0 GADFLVTEVENGGS(0.001)LGS(0.999)K;GADFLVTEVENGGS(0.003)LGS(0.997)K ; 165.66 9.05E-06 4926600 3164.96 2737.41 2423.17 2480.04 2996.24 2756.61 2240.85 1678.74 3280.49 3335.72 TRUE FALSE FALSE 2793.968187 2821.746357 2554.1739 2581.186751 2775.213345 2704.032257 2327.280335 1869.840976 3145.266814 3315.878989 0.842602579 0.850979896 0.770285619 0.778432132 0.836946509 0.815479777 0.701859248 0.563905071 0.948546923 1 11.69517564 -2.640312941 0.087334783 1.185664349 7.89E-15 0.782542946 0.053903459 36.85162499 0.333388744 0.869136402 5.443790744 0.002289218 2.640312941 -1.185664349 QSS(ph)SSDTDLSLTPK ddPTM_HeLa_CUDC101_4h_R1 1 QSSSSDTDLSLTPK 14 0 Q86YS7;Q86YS7-3;H0YFE9 Q86YS7 C2CD5 C2 domain-containing protein 5 1 0 QS(0.174)S(0.584)S(0.174)S(0.052)DT(0.016)DLSLTPK 95.751 0.0020902 0 1516.2 966.36 846.38 1079.6 1522.9 1427.4 1528 1888.1 1038.7 1593.4 TRUE FALSE FALSE 1338.473334 996.1324062 892.137863 1123.630754 1410.558701 1400.174723 1586.935472 2103.033672 995.8843464 1583.922386 0.845037198 0.628902284 0.563245946 0.70939761 0.890547866 0.883992003 1.001902294 1.32773783 0.628745673 1 10.62928593 -2.636939354 9.646949851 0.88916122 1.096910803 0 0.222127777 0 0 0.028751182 0 0.002307069 2.636939354 0.207749583 RAS(ph)NEKES(ph)AAPASPAPSPAPSPTPAPPQK ddPTM_HeLa_CUDC101_4h_R1 1 RASNEKESAAPASPAPSPAPSPTPAPPQK 29 2 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 RAS(0.84)NEKES(0.564)AAPAS(0.573)PAPS(0.018)PAPS(0.003)PT(0.001)PAPPQK 55.691 0.021149 9898400 1164.2 1393.5 1847.5 1290.1 1300.3 1321.3 1294.7 1111.8 1397.1 1476.3 TRUE FALSE FALSE 1027.734241 1436.432083 1947.381438 1342.715854 1204.37946 1296.098404 1344.637013 1238.362818 1339.510947 1467.518902 0.700320956 0.978816751 1.326988999 0.914956429 0.820690935 0.883190262 0.916265549 0.843847951 0.912772534 1 10.51916337 -2.628915362 16.93542104 0.898452449 0.644560213 0 0.15802727 0 0 0.023956126 0 0.002350091 2.628915362 -0.253892236 TQTESS(ph)TPPGIPGGSR ddPTM_HeLa_CUDC101_4h_R1 1 TQTESSTPPGIPGGSR 16 0 E9PER6;Q6A1A2;O15530-4;O15530-5;O15530;H3BQ10;O15530-3 E9PER6 PDPK1;PDPK2P Putative 3-phosphoinositide-dependent protein kinase 2;3-phosphoinositide-dependent protein kinase 1 1 0 TQTES(0.004)S(0.498)T(0.498)PPGIPGGSR 198.95 2.22E-16 22886000 3344.5 3221.6 2700.5 3116.3 3161.6 3038.9 2344.7 2286.6 3119 3320.2 TRUE FALSE FALSE 2952.46278 3320.853677 2846.497199 3243.396184 2928.375067 2980.938046 2435.135864 2546.897301 2990.4335 3300.451303 0.894563352 1.006181692 0.86245696 0.982712934 0.887265043 0.90319104 0.737819056 0.771681527 0.906068057 1 11.6884476 -2.627149193 0.382259729 0.960204747 7.55E-15 0.593592084 0.054206924 8.355207207 0.319240276 0.014363239 4.837143473 0.002359667 2.627149193 -0.960204747 SSSQPSS(ph)CCSDPSKPGGNVEGATQSLAEQMR ddPTM_HeLa_CUDC101_4h_R1 1 SSSQPSSCCSDPSKPGGNVEGATQSLAEQMR 31 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 SSSQPS(0.04)S(0.435)CCS(0.435)DPS(0.09)KPGGNVEGAT(0.001)QSLAEQMR 107.7 5.91E-11 53648000 771.85 753.87 626.27 548.95 803.33 820.94 964.79 2491.4 972.47 263.37 TRUE FALSE FALSE 681.374913 777.0958411 660.1280506 571.3385538 744.0699464 805.2819373 1002.002273 2775.010905 932.384375 261.8034635 2.602619934 2.968241255 2.521464161 2.182318546 2.842093593 3.075902536 3.827307172 10.59959585 3.561390527 1 8.032340373 -2.625793962 0.977977453 1.992035634 199.9999991 0.89972641 0.783095008 8.245078689 0.411466609 0.123690743 3285.742943 0.002367042 2.625793962 198.0079634 up AGMSSNQSISS(ph)PVLDAVPRT(ph)PSRER ddPTM_HeLa_CUDC101_4h_R1 2 AGMSSNQSISSPVLDAVPRTPSRER 25 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 AGMS(0.001)S(0.002)NQS(0.017)IS(0.116)S(0.737)PVLDAVPRT(0.909)PS(0.218)RER;AGMS(0.001)S(0.003)NQS(0.015)IS(0.088)S(0.791)PVLDAVPRT(0.847)PS(0.256)RER ; 60.347 0.0067607 63449000 3381.5 3306.4 3015.2 3283.4 4187.3 3753.4 4018.7 4704.5 3516.1 3708.4 TRUE FALSE FALSE 2985.125696 3408.266265 3178.210832 3417.311244 3878.411221 3681.810149 4173.702605 5240.041264 3371.16487 3686.342272 0.809779851 0.924565874 0.862158367 0.92701952 1.052102853 0.998770564 1.132207022 1.421474426 0.914501319 1 11.84797431 -2.624080832 0.663188114 0.907441268 5.61995838 0.883967273 0.056092773 6.78483355 0.370090654 0.013133537 39.05726241 0.002376398 2.624080832 4.712517112 SESELIDELS(ph)EDFDRSECK ddPTM_HeLa_CUDC101_4h_R1 4 SESELIDELSEDFDRSECK 19 1 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;P20810-2;E9PCH5;P20810-3;H0Y7F0;E7EQ12;E7EQA0;D6RC54;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;E7EVY3 CAST Calpastatin 1 0 SESELIDELS(1)EDFDRSECK;SESELIDELS(1)EDFDRSECK;SES(0.001)ELIDELS(0.999)EDFDRSECK;SES(0.001)ELIDELS(0.98)EDFDRS(0.019)ECK ;;; 98.703 0.00096397 56367500 8104.8 6492.1 6954.5 6171.74 8456.2 8364.4 9304.2 13734.7 7878.1 6788.5 TRUE FALSE FALSE 7154.76763 6692.113906 7330.481306 6423.450234 7832.402973 8204.863006 9663.066111 15298.20273 7553.361384 6748.1217 1.06026061 0.991700239 1.086299511 0.951887135 1.160678974 1.215873597 1.431963818 2.267031244 1.119327973 1 12.72027028 -2.622846125 0.841542251 1.025892277 20.31318566 0.97537909 0.058077007 2.505909171 0.135524898 0.007704108 80.39365633 0.002383164 2.622846125 19.28729339 up LS(ph)ASPAQEK ddPTM_HeLa_CUDC101_4h_R1 1 LSASPAQEK 9 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 LS(0.5)AS(0.5)PAQEK 125.23 0.0044395 74122000 4700.1 3921.4 4141.2 4014.1 4051.1 3941.9 3801.6 3029.1 4259.3 4177.7 TRUE FALSE FALSE 4149.161403 4042.213686 4365.085798 4177.812348 3752.258424 3866.714825 3948.228985 3373.9205 4083.729851 4152.850855 0.999111586 0.973358743 1.051105843 1.006010689 0.903537968 0.931098891 0.950727373 0.812434787 0.98335577 1 12.01988634 -2.622645441 0.505989287 1.001725077 2.31E-19 0.698587046 0.034784982 7.287000518 0.348278943 0.006665439 6.286461892 0.002384265 2.622645441 -1.001725077 GILSLPHQAS(ph)PVSR ddPTM_HeLa_CUDC101_4h_R1 2 GILSLPHQASPVSR 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 0 GILSLPHQAS(0.999)PVS(0.001)R;GILSLPHQAS(0.998)PVS(0.002)R ; 139.08 0.00035566 146360000 10749.2 9516.2 8194.8 7351.6 9932.3 8643.8 7600.7 6068 9133.7 9503.5 TRUE FALSE FALSE 9489.195071 9809.382843 8637.835676 7651.430024 9199.614017 8478.933917 7893.861545 6758.756592 8757.20502 9446.972759 1.004469401 1.038362563 0.914349591 0.809934592 0.973816084 0.897529201 0.835596942 0.715441524 0.926985315 1 13.20563638 -2.622154555 0.329286031 1.009645139 1.33E-17 0.609271009 0.059763828 7.524110471 0.249118396 0.018645842 3.807811884 0.002386962 2.622154555 -1.009645139 GNDS(ph)DGEGESDDPEKKK ddPTM_HeLa_CUDC101_4h_R1 3 GNDSDGEGESDDPEKKK 17 2 O75351;K7EKZ3 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 1 0 GNDS(0.969)DGEGES(0.031)DDPEKKK;GNDS(0.959)DGEGES(0.041)DDPEKKK;GNDS(0.865)DGEGES(0.135)DDPEKKK ;; 87.319 0.0069788 81545000 19512.5 14794.6 17500.3 17947.5 17118.1 15076.2 15305.8 11888.8 18679.3 18286.2 TRUE FALSE FALSE 17225.27433 15250.40409 18446.41915 18679.47663 15855.33187 14788.6466 15896.14983 13242.17294 17909.33135 18177.43287 0.947618646 0.838974579 1.014797815 1.027619068 0.872253633 0.81357179 0.874499163 0.728495219 0.985250859 1 14.14986085 -2.618196332 0.376326575 0.978732639 3.76E-11 0.591944644 0.060589634 9.40714409 0.352323492 0.016847366 5.451703208 0.002408816 2.618196332 -0.978732639 FAQSAPGSPLSS(ph)QPVLITVQR ddPTM_HeLa_CUDC101_4h_R1 1 FAQSAPGSPLSSQPVLITVQR 21 0 Q01167-2;Q01167 Q01167-2 FOXK2 Forkhead box protein K2 1 0 FAQSAPGS(0.244)PLS(0.113)S(0.643)QPVLITVQR 141.59 7.58E-07 91213000 4957.5 3979.5 4025.2 3511.7 3789.9 4044.2 3607.4 2533.8 4853.3 4359.5 TRUE FALSE FALSE 4376.389365 4102.103678 4242.814488 3654.922305 3510.326628 3967.063623 3746.538626 2822.23755 4653.24492 4333.5695 1.009880969 0.946587721 0.979057677 0.843397644 0.810031229 0.91542633 0.864538719 0.651250095 1.07376723 1 12.08134013 -2.618043895 0.285803928 1.017310844 2.66E-19 0.746653478 0.058368935 7.459760552 0.214628387 0.024859773 3.200112679 0.002409662 2.618043895 -1.017310844 ETQS(ph)PEQVK ddPTM_HeLa_CUDC101_4h_R1 6 ETQSPEQVK 9 0 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 ETQS(1)PEQVK;ET(0.027)QS(0.973)PEQVK;ET(0.016)QS(0.984)PEQVK;ET(0.004)QS(0.996)PEQVK;ET(0.002)QS(0.998)PEQVK;ET(0.004)QS(0.996)PEQVK ;;;;; 161.19 6.13E-05 4697604600 35416.4 22444.2 30494.9 31705.5 27063.5 25063.6 26986.3 16549.9 32414.7 34554 TRUE FALSE FALSE 31264.94328 23135.6792 32143.54654 32998.58733 25067.07952 24585.55359 28027.17063 18433.87372 31078.55235 34348.47127 0.910228087 0.673557755 0.935807195 0.96070032 0.729787341 0.715768495 0.81596559 0.536672319 0.904801617 1 15.06795827 -2.616862959 0.176575053 1.026216388 2.71E-15 0.472687706 0.103117943 18.41630712 0.329066419 0.150205093 4.553731082 0.002416223 2.616862959 -1.026216388 TSDIFGS(ph)PVTATSR ddPTM_HeLa_CUDC101_4h_R1 6 TSDIFGSPVTATSR 14 0 A6NGP5;Q9H910;Q9H910-3;H3BU16;Q9H910-2;H3BMV3;H3BMT0;H3BTV5 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 0 T(0.048)S(0.004)DIFGS(0.948)PVTATSR;TSDIFGS(0.877)PVT(0.123)ATSR;TSDIFGS(0.786)PVT(0.141)AT(0.016)S(0.057)R;T(0.017)S(0.001)DIFGS(0.98)PVT(0.001)ATSR;TS(0.001)DIFGS(0.87)PVT(0.128)AT(0.001)SR;TS(0.001)DIFGS(0.718)PVT(0.138)AT(0.138)S(0.006)R ;;;;; 233.28 2.45E-43 1395965000 15143.5 14109.2 11907.9 12242.3 14250.8 12826.6 11506.2 7839.4 14390.1 15277.9 TRUE FALSE FALSE 13368.40189 14543.88773 12551.67709 12741.59391 13199.54688 12581.95398 11949.99799 8731.805608 13796.93399 15187.02637 0.880251444 0.957652102 0.826473648 0.838978849 0.869133071 0.82846725 0.786855682 0.574951633 0.908468429 1 13.8905518 -2.616134326 0.257084203 0.971358897 1.53E-29 0.753972306 0.054218291 7.888522662 0.204206333 0.030939382 2.844668766 0.00242028 2.616134326 -0.971358897 LLSPQMS(ph)GEEEDSDLAAK ddPTM_HeLa_CUDC101_4h_R1 3 LLSPQMSGEEEDSDLAAK 18 0 P42858;A0A3B3IU44 P42858 HTT Huntingtin 1 0 LLSPQMS(1)GEEEDSDLAAK;LLS(0.003)PQMS(0.989)GEEEDS(0.008)DLAAK;LLSPQMS(1)GEEEDSDLAAK ;; 156.13 4.05E-05 48229000 5211.4 4097.16 3821.7 4857.3 6414.3 8164.2 10346 15866.5 4198.9 3765.19 TRUE FALSE FALSE 4600.527592 4223.388643 4028.312662 5055.401689 5941.129868 8008.481487 10745.04869 17672.67823 4025.819565 3742.794482 1.229169171 1.12840517 1.07628476 1.350702453 1.587351348 2.139706448 2.870862596 4.721786972 1.075618654 1 11.86990012 -2.614709264 0.598891274 1.08929101 29.34103118 0.995582853 0.07433077 1.083520067 0.056460967 0.017081331 32.82372505 0.002428235 2.614709264 28.25174017 up TDGFAEAIHS(ph)PQVAGVPR ddPTM_HeLa_CUDC101_4h_R1 4 TDGFAEAIHSPQVAGVPR 18 0 P12270 P12270 TPR Nucleoprotein TPR 1 0 TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;T(0.003)DGFAEAIHS(0.997)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR ;;; 136.67 4.89E-05 612595000 14149.8 9184.9 8599.3 8576.9 10161.9 10058.2 12507.5 21582.1 10583 13180.3 TRUE FALSE FALSE 12491.18189 9467.875882 9064.204169 8926.703055 9412.276882 9866.356593 12989.91846 24038.91903 10146.76426 13101.90299 0.95338684 0.722633643 0.691823484 0.68132874 0.718390061 0.753047599 0.991452805 1.834765457 0.774449656 1 13.67748875 -2.614060027 14.07103685 0.935944143 1.039194844 0 0.330477689 0 0 0.041580354 0 0.002431868 2.614060027 0.1032507 S(ph)PEDQLGK ddPTM_HeLa_CUDC101_4h_R1 2 SPEDQLGK 8 0 Q9UK61-3;Q9UK61;Q9UK61-2 Q9UK61-3 FAM208A Protein FAM208A 1 0 S(1)PEDQLGK;S(1)PEDQLGK ; 133.91 0.0051305 122916000 12978.7 10195.4 10814.1 10606.5 10401.5 10497.7 9842.6 8003.7 12003.9 11552.9 TRUE FALSE FALSE 11457.35646 10509.50819 11398.74296 11039.07892 9634.202068 10297.47386 10222.23238 8914.808856 11509.09416 11484.18284 0.997664059 0.915128951 0.992560212 0.961242003 0.838910544 0.896665789 0.89011404 0.776268454 1.002169186 1 13.48736058 -2.612586221 0.270991018 1.010222084 0.313874036 0.751410614 0.036755337 7.03663727 0.191607514 0.017765521 1.938653428 0.002440135 2.612586221 -0.696348049 VAS(ph)SPAPPEGPSHPR ddPTM_HeLa_CUDC101_4h_R1 3 VASSPAPPEGPSHPR 15 0 H7BYJ3;O14578;O14578-4;O14578-3 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 VAS(0.564)S(0.436)PAPPEGPSHPR;VAS(0.496)S(0.496)PAPPEGPS(0.007)HPR;VAS(0.886)S(0.107)PAPPEGPS(0.007)HPR ;; 161.87 5.15E-05 43955900 8545.8 6303.7 7628.9 6771.8 6482.2 6435 5855.7 4688.8 7378.3 8445 TRUE FALSE FALSE 7544.074279 6497.909525 8041.34141 7047.983274 6004.02102 6312.263096 6081.556311 5222.554039 7074.163351 8394.768764 0.898663738 0.774042705 0.957899096 0.839568483 0.715209816 0.751928168 0.724445959 0.622120059 0.842687101 1 13.03527487 -2.611724393 0.159943619 1.043807365 4.64E-11 0.591096759 0.071199961 11.28055944 0.182699084 0.109104022 2.551037455 0.002444982 2.611724393 -1.043807365 S(ph)FDYNYRR ddPTM_HeLa_CUDC101_4h_R1 1 SFDYNYRR 8 1 O75494-6;O75494-3;Q5JRI1;O75494-5;O75494-4;O75494-2;O75494 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 S(0.96)FDYNY(0.04)RR 70.808 0.033785 35314000 4999 5632 4672.5 5136.5 6945.6 6362.2 6251.7 6792.2 5520.4 3595.7 TRUE FALSE FALSE 4413.024798 5805.515244 4925.109484 5345.988672 6433.236926 6240.851635 6492.830163 7565.396593 5292.846775 3574.312616 1.234649923 1.624232648 1.377917942 1.495669027 1.799852899 1.746028483 1.816525542 2.116601821 1.480801302 1 11.80345011 -2.605797004 0.147560199 0.788490613 4.047294516 0.632464005 0.185281634 8.026468363 0.119978185 0.272507053 5.211596272 0.00247858 2.605797004 3.258803902 SSLSNNS(ph)LK ddPTM_HeLa_CUDC101_4h_R1 1 SSLSNNSLK 9 0 Q9ULJ7-2;Q9ULJ7 Q9ULJ7-2 ANKRD50 Ankyrin repeat domain-containing protein 50 1 0 S(0.002)S(0.008)LS(0.051)NNS(0.939)LK 107.09 0.011666 16815000 3460.7 3213.9 3370.2 3775.1 3665.5 3416.9 2650.8 2800.5 3486.4 3207.4 TRUE FALSE FALSE 3055.041992 3312.91645 3552.403206 3929.064895 3395.103368 3351.728325 2753.042244 3119.2976 3342.689116 3188.322242 0.958197372 1.039078298 1.114192022 1.232329921 1.06485578 1.051251433 0.863476786 0.978350795 1.048416334 1 11.63858173 -2.603442457 8.985795617 1.010052219 0.722725139 0 0.096201304 0 0 0.013809905 0 0.002492055 2.603442457 -0.28732708 GSYGS(ph)DAEEEEYR ddPTM_HeLa_CUDC101_4h_R1 3 GSYGSDAEEEEYR 13 0 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 GSYGS(0.999)DAEEEEYR;GSYGS(1)DAEEEEYR;GSYGS(1)DAEEEEYR ;; 246.25 1.11E-55 278227200 4386.21 4087.97 4168.83 3780.46 3768.5 4056.12 3351.14 2834.08 5055.47 4346.43 TRUE FALSE FALSE 3872.065113 4213.91551 4394.20956 3934.643499 3490.505263 3978.756269 3480.394592 3156.700211 4847.081387 4320.577241 0.896191619 0.975313083 1.017042241 0.910675421 0.80787938 0.920885346 0.80553926 0.730620016 1.121859677 1 12.07700836 -2.603421261 0.376375952 0.962976346 6.90E-16 0.591908215 0.070501062 8.859804155 0.328770649 0.015284451 5.065037726 0.002492176 2.603421261 -0.962976346 LSESSAS(ph)PQPK ddPTM_HeLa_CUDC101_4h_R1 2 LSESSASPQPK 11 0 Q8N5Y2;Q8N5Y2-3;Q8N5Y2-2;A0A3B3IT59;Q8N5Y2-6;Q8N5Y2-4;A0A3B3ITL5;A0A3B3ITF3;A0A3F2YNX2;A0A3B3IRN2;A0A3B3IU80;A0A3B3IUB0;A0A3B3IS72;A0A3B3ISB4;A0A3B3IRI6;A0A3B3ITV8;A0A3B3IRT2;A0A3B3ITF8;A0A3B3IT49;Q8N5Y2-5;A0A3B3ITX5 Q8N5Y2 MSL3 Male-specific lethal 3 homolog 1 0 LSES(0.046)S(0.046)AS(0.907)PQPK;LSESS(0.011)AS(0.989)PQPK ; 156 0.00018799 72627000 7218.5 6116.9 5832.6 5558.3 6476.5 5907.4 5173.1 4223.5 6722.6 6561.2 TRUE FALSE FALSE 6372.358373 6305.354439 6147.927999 5784.991499 5998.741498 5794.726187 5372.6282 4704.286168 6445.491583 6522.173691 0.977029848 0.966756596 0.942619484 0.886972929 0.919745745 0.888465481 0.823748102 0.721275819 0.98824286 1 12.67113715 -2.599661126 0.335512 0.996272822 1.98E-15 0.946190426 0.019004948 2.770844383 0.092241068 0.006331028 1.420856293 0.002513847 2.599661126 -0.996272822 DRFS(ph)AEDEALSNIAR ddPTM_HeLa_CUDC101_4h_R1 3 DRFSAEDEALSNIAR 15 1 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5;C9JJC9;C9JC17;C9J321;C9J0U5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 DRFS(1)AEDEALSNIAR;DRFS(1)AEDEALSNIAR;DRFS(1)AEDEALSNIAR ;; 97.823 0.0027652 6290500 3272.6 3377.26 2735.05 3019.4 3045.31 2979.05 2649.21 2226.83 3531.1 3255.03 TRUE FALSE FALSE 2888.990789 3481.309378 2882.915076 3142.544183 2820.663548 2922.229585 2751.390917 2480.323326 3385.546563 3235.668937 0.892857349 1.075916432 0.890979619 0.97121932 0.871740467 0.903129968 0.850331406 0.766556584 1.046320445 1 11.65984829 -2.597323516 0.443510452 0.959724994 1.72E-13 0.563803483 0.059588882 10.8108189 0.459219239 0.012582602 7.587288835 0.002527415 2.597323516 -0.959724994 GQGSQS(ph)KGS(ph)GDDGK ddPTM_HeLa_CUDC101_4h_R1 1 GQGSQSKGSGDDGK 14 1 O60663-2;O60663;O60663-3 O60663-2 LMX1B LIM homeobox transcription factor 1-beta 2 0 GQGS(0.321)QS(0.679)KGS(1)GDDGK 121.42 0.017053 7624900 8510.9 5070.9 7608.6 7401.1 6441.8 6755.9 6020.8 4086.6 7394.3 8500.3 TRUE FALSE FALSE 7513.265204 5227.128419 8019.943931 7702.948848 5966.601248 6627.042464 6253.024273 4551.802025 7089.503824 8449.739838 0.889171187 0.618614125 0.949135013 0.911619647 0.706128397 0.784289527 0.740025657 0.538691381 0.839020368 1 13.04469121 -2.597082038 0.135972837 1.070715861 5.83E-17 0.35416795 0.113069901 28.25474316 0.389145845 0.352256756 5.552004789 0.00252882 2.597082038 -1.070715861 SWDSS(ph)SPVDRPEPEAASPTTR ddPTM_HeLa_CUDC101_4h_R1 2 SWDSSSPVDRPEPEAASPTTR 21 1 C9J0I9;Q86WB0;Q86WB0-2 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 0 S(0.007)WDS(0.132)S(0.431)S(0.431)PVDRPEPEAASPTTR;S(0.002)WDS(0.119)S(0.439)S(0.439)PVDRPEPEAASPTTR ; 89.604 0.00041293 412060000 1963.76 1833.82 1439.92 1525.91 1903.17 1583.73 1315.78 1396.96 2009.08 1991.69 TRUE FALSE FALSE 1733.57103 1890.317821 1517.766431 1588.143205 1762.776941 1553.522989 1366.530075 1555.98428 1926.264872 1979.843339 0.875610204 0.954781514 0.766609358 0.802155996 0.890361831 0.784669654 0.690221316 0.785912829 0.972938027 1 10.95117056 -2.597046437 0.054302498 1.364237689 5.62E-13 0.680123379 0.054826283 107.3004257 0.602212131 4.13560998 13.41097561 0.002529028 2.597046437 -1.364237689 TLSNAEDYLDDEDSD ddPTM_HeLa_CUDC101_4h_R1 2 TLSNAEDYLDDEDSD 15 0 Q92882 Q92882 OSTF1 Osteoclast-stimulating factor 1 0 0 ; ; 217.14 1.24E-23 24704000 9549.6 8699.7 8036.7 7509.4 9028.2 6670.3 5595.1 5383.4 8720.9 9074.3 FALSE FALSE TRUE 8430.210364 8967.727445 8471.188312 7815.66579 8362.207673 6543.075141 5810.904881 5996.224496 8361.420811 9020.32566 0.93457938 0.994168923 0.939122226 0.866450512 0.927040551 0.725370168 0.64420123 0.6647459 0.926953319 1 13.1389638 -5.214779213 1.094364377 0.967628244 0.620637038 0.905389678 0.039053945 0.121801109 0.246072198 0.006233352 0.032704508 6.10E-06 5.214779213 -0.346991206 VS(ph)PSPSQESLSSSK ddPTM_HeLa_CUDC101_4h_R1 1 VSPSPSQESLSSSK 14 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83;Q5JSH3-3 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 VS(0.998)PS(0.002)PSQESLSSSK 183.75 6.79E-11 38408000 1053.9 1006 923.59 882.42 949.19 701.37 670.94 744.33 1205.5 1126.7 TRUE FALSE FALSE 930.3634396 1036.993668 973.5220691 918.4089017 879.1701448 687.9925358 696.8183805 829.0615185 1155.80878 1119.998338 0.830682875 0.925888577 0.869217423 0.820009165 0.784974508 0.614279961 0.622160191 0.740234597 1.031973656 1 10.12928088 -2.591690995 0.126095733 1.075529638 2.51E-17 0.773591811 0.063834356 21.65284074 0.276781658 0.299246156 3.971967802 0.002560407 2.591690995 -1.075529638 VLDTSSLTQS(ph)APAS(ph)PTNK ddPTM_HeLa_CUDC101_4h_R1 3 VLDTSSLTQSAPASPTNK 18 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 2 0 VLDTSSLT(0.008)QS(0.992)APAS(0.999)PT(0.001)NK;VLDTSS(0.002)LT(0.038)QS(0.96)APAS(0.662)PT(0.337)NK;VLDTSSLT(0.001)QS(0.999)APAS(0.942)PT(0.058)NK ;; 171.52 2.55E-06 114607000 11191.9 8496.5 8206.2 8351.6 8978.2 8889 8252.4 6004 8879.3 9140.5 TRUE FALSE FALSE 9880.002448 8758.267094 8649.851994 8692.214347 8315.896073 8719.457135 8570.697832 6687.471091 8513.291496 9086.131899 1.087371673 0.96391591 0.951983978 0.956646287 0.915229513 0.959644569 0.943272443 0.736008586 0.936954426 1 13.14945053 -2.590281607 0.373847277 1.036026599 3.59E-15 0.512665646 0.0578545 8.520983362 0.311686797 0.01576083 5.207995711 0.00256873 2.590281607 -1.036026599 GVSMSLPSS(ph)PLLPR ddPTM_HeLa_CUDC101_4h_R1 3 GVSMSLPSSPLLPR 14 0 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 GVSMS(0.003)LPS(0.181)S(0.816)PLLPR;GVSMS(0.004)LPS(0.128)S(0.868)PLLPR;GVSMSLPS(0.036)S(0.964)PLLPR ;; 226.88 4.81E-33 198886000 11554.5 11931.9 9476.7 9689.2 11734.5 9988.1 9420.6 7934.24 11879.4 11124.6 TRUE FALSE FALSE 10200.09903 12299.5077 9989.039067 10084.36746 10868.86931 9797.593634 9783.955698 8837.44181 11389.7261 11058.43038 0.922382171 1.112229066 0.903296283 0.91191671 0.98285823 0.885984113 0.884750851 0.799158787 1.029958657 1 13.43285901 -2.587199938 0.480658692 0.972326996 8.04E-11 0.501371887 0.059641975 12.51968961 0.560024095 0.011862612 9.884598757 0.002587022 2.587199938 -0.972326996 GS(ph)PHYFS(ph)PFRPY ddPTM_HeLa_CUDC101_4h_R1 2 GSPHYFSPFRPY 12 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 2 0 GS(1)PHY(0.02)FS(0.98)PFRPY;GS(1)PHY(0.076)FS(0.924)PFRPY ; 92.773 0.019907 356760000 4613 4618.1 3418.3 3442.2 4053.3 3861.4 3397.6 2358.81 4400.7 4626 TRUE FALSE FALSE 4072.271133 4760.378187 3603.103638 3582.587794 3754.296134 3787.750229 3528.64657 2627.327396 4219.301283 4598.484346 0.885568119 1.035205913 0.783541569 0.779080133 0.816420336 0.823695362 0.767349915 0.571346382 0.91754173 1 12.16694271 -2.584954226 0.207799709 0.998644221 4.48E-16 0.67490979 0.071425074 11.42681116 0.236908656 0.066950635 3.308911009 0.002600434 2.584954226 -0.998644221 YGCSSST(ph)ILNYVLET(ph)EPVVLI ddPTM_HeLa_CUDC101_4h_R1 1 YGCSSSTILNYVLETEPVVLI 21 0 F8WEX7 F8WEX7 BCHE Carboxylic ester hydrolase 2 0 YGCS(0.184)S(0.205)S(0.229)T(0.381)ILNY(0.001)VLET(1)EPVVLI 50.498 0.033579 7486700 2430.8 2356.1 2066.3 1950.5 2494.8 2310.5 2266.8 2039.8 2369 2158.2 TRUE FALSE FALSE 2145.865309 2428.688648 2178.010428 2030.049821 2310.763574 2266.431062 2354.231235 2272.002587 2271.348817 2145.36293 1.000234169 1.132064237 1.015217704 0.946250069 1.077096813 1.056432471 1.097358028 1.059029479 1.058724743 1 11.06700601 -2.583744155 0.18217219 0.987438891 1.250938983 0 0.051890125 34.82794599 0.634744588 0.067668907 2.293068061 0.002607689 2.583744155 0.263500092 QEAGDS(ph)PPPAPGTPK ddPTM_HeLa_CUDC101_4h_R1 2 QEAGDSPPPAPGTPK 15 0 J3KR72;P49848-4;P49848-2;P49848;P49848-3 J3KR72 TAF6 Transcription initiation factor TFIID subunit 6 1 0 QEAGDS(0.996)PPPAPGT(0.004)PK;QEAGDS(0.999)PPPAPGT(0.001)PK ; 137.95 0.00049229 63410000 10380.7 10480.7 10733.8 11541 11214.4 10703.7 9293.5 8545.9 10954.7 10923.2 TRUE FALSE FALSE 9163.890082 10803.59794 11314.1017 12011.69186 10387.13605 10499.54476 9651.953408 9518.730712 10503.14263 10858.22832 0.843958131 0.994968758 1.04198414 1.106229443 0.95661426 0.966966658 0.888906838 0.876637554 0.967298008 1 13.40650111 -2.582869221 12.7070538 0.947559991 0.607482303 0 0.076903302 0 0 0.012119181 0 0.002612948 2.582869221 -0.340077688 GSDIDNPTLTVMDIS(ph)PPSRS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 GSDIDNPTLTVMDISPPSRSPR 22 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 2 0 GSDIDNPTLTVMDIS(0.938)PPS(0.293)RS(0.769)PR 97.304 0.00024224 21386000 2038.9 1471.1 1438.1 1550.2 1867.8 1538.5 1511 1112.7 1721.7 1703.2 TRUE FALSE FALSE 1799.903233 1516.422847 1515.848036 1613.423857 1730.016115 1509.155676 1569.279776 1239.36527 1650.730797 1693.069291 1.06310075 0.895664965 0.895325457 0.95295796 1.021822394 0.891372659 0.926884555 0.732022769 0.974993053 1 10.7254253 -2.580840619 0.377060926 1.020693746 1.42E-14 0.491309603 0.06233419 10.19431794 0.373505646 0.017979544 6.214500928 0.002625182 2.580840619 -1.020693746 T(ph)TPTLGLEEVLSSR ddPTM_HeLa_CUDC101_4h_R1 1 TTPTLGLEEVLSSR 14 0 O43474-4;O43474-1;O43474 O43474-4 KLF4 Krueppel-like factor 4 1 0 T(0.998)T(0.002)PTLGLEEVLSSR 143.56 0.0020135 10975000 1165.3 1073.3 664.14 758.58 939.56 1107.9 1264.5 1894 1300.8 1328 TRUE FALSE FALSE 1028.7053 1106.367101 700.0454173 789.5181713 870.2505307 1086.768653 1313.272189 2109.605304 1247.180473 1320.100997 0.779262574 0.83809277 0.530296863 0.598074066 0.659230265 0.823246597 0.994827056 1.598063564 0.944761406 1 10.36643259 -2.578860904 10.96799719 0.868687305 0.91469506 0 0.285226365 0 0 0.037703234 0 0.002637176 2.578860904 0.046007755 SVTVVEDDEDEDGDDLLHHHHVSGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SVTVVEDDEDEDGDDLLHHHHVSGSR 26 0 P02545-2;Q3BDU5;Q5TCI8 P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 SVTVVEDDEDEDGDDLLHHHHVS(0.159)GS(0.84)R 41.935 0.030513 8372000 2280.3 1483.5 1679.6 1772.6 2081.1 1771.2 1768.2 1036.1 2108.7 2038.5 TRUE FALSE FALSE 2013.006691 1529.204877 1770.404257 1844.89429 1927.581399 1737.417311 1836.400066 1154.045436 2021.778493 2026.374911 0.993402889 0.754650518 0.873680505 0.910440748 0.951246183 0.857401708 0.906248916 0.5695123 0.997731704 1 10.9846854 -2.571077453 0.290551493 0.997211755 1.81E-34 0.466066596 0.09256015 13.2532864 0.378879305 0.039790058 5.720237802 0.002684866 2.571077453 -0.997211755 TNS(ph)PGFQK ddPTM_HeLa_CUDC101_4h_R1 2 TNSPGFQK 8 0 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 1 0 T(0.045)NS(0.955)PGFQK;T(0.381)NS(0.619)PGFQK ; 97.597 0.021043 118681000 12270.3 8971.2 10320.2 10054.4 9472.5 9459.7 9113.3 6014.2 10436 11714.1 TRUE FALSE FALSE 10831.99403 9247.592039 10878.14123 10464.46189 8773.732547 9279.271983 9464.803034 6698.832218 10005.82366 11644.42401 0.930230128 0.794164832 0.934193157 0.898667197 0.75347072 0.796885443 0.812818481 0.575282402 0.859280257 1 13.50735166 -2.570848551 0.209313654 1.009914255 8.50E-13 0.567494984 0.074545884 9.664481135 0.200775472 0.055883674 2.857201078 0.002686281 2.570848551 -1.009914255 EAPATPSSKEASSPPAVT(ph)PST(ph)YK ddPTM_HeLa_CUDC101_4h_R1 1 EAPATPSSKEASSPPAVTPSTYK 23 1 E9PAV3 E9PAV3 NACA "Nascent polypeptide-associated complex subunit alpha, muscle-specific form" 2 0 EAPAT(0.002)PS(0.002)S(0.002)KEAS(0.062)S(0.069)PPAVT(0.444)PS(0.444)T(0.504)Y(0.472)K 44.105 0.037593 215260000 5222 3363.5 3319.3 2839.4 5075.3 4509.9 4401.7 3980.2 4917.1 4113.6 TRUE FALSE FALSE 4609.885076 3467.125448 3498.751398 2955.203005 4700.90523 4423.881172 4571.475043 4433.289879 4714.415057 4089.132124 1.127350483 0.847887851 0.855621998 0.722696874 1.149609523 1.081863104 1.117957284 1.08416401 1.15291336 1 11.99757896 -2.55959696 12.93515299 1.025739802 1.12151169 0 0.144906096 0 0 0.01972993 0 0.002756786 2.55959696 0.095771889 DLQS(ph)PDFTTGFHSDK ddPTM_HeLa_CUDC101_4h_R1 3 DLQSPDFTTGFHSDK 15 0 E9PDR5;E7EPI0;Q9P2D0-2;Q9P2D0 E9PDR5 IBTK Inhibitor of Bruton tyrosine kinase 1 0 DLQS(0.993)PDFT(0.007)TGFHSDK;DLQS(0.999)PDFTTGFHSDK;DLQS(1)PDFTTGFHSDK ;; 143.23 0.00023494 48463600 15114.9 13213.3 11202.4 11801 11406.7 11994.7 10789.4 8288.2 12589.9 15171.2 TRUE FALSE FALSE 13343.15433 13620.38611 11808.03563 12282.29579 10565.25047 11765.92108 11205.55077 9231.695186 12070.93899 15080.96103 0.884768173 0.903151071 0.782976337 0.814423946 0.70056878 0.780183773 0.743026307 0.612142367 0.800409136 1 13.88044075 -2.558395929 0.118354547 1.10920581 1.15E-19 0.496543468 0.073427862 13.60858039 0.162177622 0.206722387 2.425750549 0.00276442 2.558395929 -1.10920581 TLTAEEAEEEWER ddPTM_HeLa_CUDC101_4h_R1 2 TLTAEEAEEEWER 13 0 P35269;M0R0R9 P35269 GTF2F1 General transcription factor IIF subunit 1 0 0 ; ; 185.99 2.80E-10 10761700 1408.29 1538.24 1261.29 1267.56 1443.4 1295.64 1421.98 1208.16 1600.53 1686.22 FALSE FALSE TRUE 1243.212381 1585.631351 1329.479153 1319.256576 1336.923258 1270.927826 1476.826245 1345.692051 1534.555476 1676.190288 0.741689288 0.945973355 0.793155265 0.787056568 0.797596351 0.758224072 0.881061211 0.802827734 0.915501949 1 10.71097022 -9.454950932 1.077977639 1.004778887 0.808997529 0.447300932 0.0616171 0.290214345 0.578892857 0.044755153 0.010041596 3.51E-10 9.454950932 -0.195781359 TLTAEEAEEEWERR ddPTM_HeLa_CUDC101_4h_R1 3 TLTAEEAEEEWERR 14 1 P35269;M0R0R9 P35269 GTF2F1 General transcription factor IIF subunit 1 0 0 ;; ;; 182.25 8.22E-11 21710800 2532.54 2301.39 2178.46 2149.47 2804.85 2443.58 1966.49 2055.06 2544.68 2765.39 FALSE FALSE TRUE 2235.6795 2372.293098 2296.234137 2237.134677 2597.941804 2396.972783 2042.338178 2288.999724 2439.787213 2748.941337 0.813287454 0.862984257 0.835315802 0.813816813 0.945069932 0.871962144 0.742954442 0.832684093 0.887537024 1 11.4246604 -9.319094711 0.834002804 1.009839345 0.838728116 0.25406472 0.05928244 0.400838314 0.453066669 0.045825139 0.009742745 4.80E-10 9.319094711 -0.171111229 TLTDEELADWK ddPTM_HeLa_CUDC101_4h_R1 1 TLTDEELADWK 11 0 G8JLH9;P40763-2;P40763;P40763-3 G8JLH9 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 0 0 148.32 3.66E-06 0 835.31 689.39 553.16 620.46 717.51 689.68 557.9 556.41 755.1 812.71 FALSE FALSE TRUE 737.396228 710.6292888 583.0655028 645.7650407 664.5807168 676.5255031 579.4183899 619.7494653 723.9744584 807.8759648 0.912759211 0.879626725 0.721726513 0.799336865 0.822627168 0.837412589 0.717212066 0.767134427 0.896145559 1 9.657989999 -7.405035647 0.737959295 0.982845941 0.774168918 0.631392885 0.051424187 0.192393872 0.221655689 0.012640931 0.013693609 3.94E-08 7.405035647 -0.208677023 EVMLQNGET(ph)PKDLNDEK ddPTM_HeLa_CUDC101_4h_R1 2 EVMLQNGETPKDLNDEK 17 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8Y425;A0A2R8YDJ9;A0A2R8YFD8;A0A2R8YE38;A0A2R8YDW2;A0A2R8Y5M9;A0A2R8YD40;A0A2R8Y4X2;A0A2R8Y7I0;A0A2R8Y7M9;A0A2R8Y7X1 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 0 EVMLQNGET(1)PKDLNDEK;EVMLQNGET(1)PKDLNDEK ; 81.428 0.01327 13658600 3171.5 2842 2321.66 2877.6 2303.88 2640.7 2513 1457.5 2732.9 3279.7 TRUE FALSE FALSE 2799.741578 2929.558651 2447.175962 2994.960966 2133.927362 2590.333047 2609.927252 1623.415909 2620.248705 3260.192199 0.858765805 0.898584646 0.750623219 0.918645523 0.654540356 0.794533846 0.800543984 0.497950983 0.803709888 1 11.6707413 -2.548067787 0.143595646 1.049536153 2.52E-15 0.416913635 0.103036446 21.12711119 0.302561202 0.232217494 4.3036064 0.00283095 2.548067787 -1.049536153 GSEGSQS(ph)PGSSVDDAEDDPSR ddPTM_HeLa_CUDC101_4h_R1 1 GSEGSQSPGSSVDDAEDDPSR 21 0 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 1 0 GSEGS(0.012)QS(0.547)PGS(0.359)S(0.082)VDDAEDDPSR 95.307 0.00039307 6381300 580.55 805.64 580.46 669.92 707.42 679.09 758.93 739.36 820.33 629.29 TRUE FALSE FALSE 512.4988091 830.4608135 611.8414234 697.2422332 655.235036 666.1374897 788.2021843 823.5257538 786.5156502 625.5469551 0.819281119 1.327575503 0.978090323 1.114612145 1.047459396 1.06488807 1.260020815 1.316489109 1.25732472 1 9.28897437 -2.547259008 0.300108305 0.923936519 2.382244219 0 0.163157411 13.86018971 0.403891179 0.055353936 9.131191042 0.002836227 2.547259008 1.4583077 SSS(ph)PRGEASSLNGESH ddPTM_HeLa_CUDC101_4h_R1 2 SSSPRGEASSLNGESH 16 1 Q8IY57-5;Q8IY57-3;Q8IY57 Q8IY57-5 YAF2 YY1-associated factor 2 1 0 S(0.028)S(0.028)S(0.941)PRGEAS(0.001)SLNGESH;S(0.236)S(0.236)S(0.5)PRGEAS(0.021)S(0.006)LNGESH ; 109.55 0.0089605 16038700 1349.9 1351.95 940.47 1100.12 2054.3 1668.85 1455.32 1424.78 1393.62 1958.82 TRUE FALSE FALSE 1191.666768 1393.601977 991.314653 1144.987649 1902.758382 1637.019467 1511.45218 1586.971196 1336.174394 1947.168852 0.611999708 0.715706794 0.509105644 0.588026892 0.977192286 0.840717776 0.776230669 0.815014679 0.686213932 1 10.92716228 -2.547129592 14.6836303 0.782639985 43.06879663 0 0.15657255 0 0 0.025235759 0 0.002837072 2.547129592 42.28615665 S(ph)APS(ph)SPAPR ddPTM_HeLa_CUDC101_4h_R1 1 SAPSSPAPR 9 0 E9PAK5;O75064 E9PAK5 DENND4B DENN domain-containing protein 4B 2 0 S(1)APS(0.636)S(0.364)PAPR 126.39 0.040033 6583500 5158.7 4067.1 4286.1 4323.4 4236.1 4219.9 3867.6 2859.9 4001.1 4763.3 TRUE FALSE FALSE 4554.005006 4192.40253 4517.819531 4499.726939 3923.611343 4139.412438 4016.774628 3185.459456 3836.172964 4734.96768 0.961781645 0.885413125 0.954139465 0.950318406 0.828645855 0.874221899 0.848321446 0.672752101 0.810179335 1 12.20913886 -2.545016162 0.307056703 0.991098395 4.04E-14 0.423620745 0.069182512 5.758194968 0.171256305 0.014840936 2.652807698 0.002850912 2.545016162 -0.991098395 TLTLVDTGIGMTK ddPTM_HeLa_CUDC101_4h_R1 3 TLTLVDTGIGMTK 13 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 ;; ;; 197.3 2.68E-10 277820 1907.64 1822.76 1789.36 1629.93 1755.05 1701.42 1890.87 1574.67 1865.43 1862.47 FALSE FALSE TRUE 1684.029331 1878.917075 1886.098214 1696.405591 1625.583458 1668.968248 1963.801489 1753.924068 1788.536186 1851.391946 0.909601738 1.014867262 1.018746041 0.916286578 0.878033126 0.901466733 1.060716232 0.947354271 0.966049458 1 10.85439464 YGS(ph)IVDDERLSAEEMDER ddPTM_HeLa_CUDC101_4h_R1 1 YGSIVDDERLSAEEMDER 18 1 Q13576 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 1 0 Y(0.061)GS(0.933)IVDDERLS(0.006)AEEMDER 72.383 0.0094257 4295200 1241.6 1130.6 1199.9 1558.5 1732.5 1739.2 2241.7 3430.7 1368.9 1571.4 TRUE FALSE FALSE 1096.06153 1165.432446 1264.770223 1622.062366 1604.696927 1706.027658 2328.16312 3821.237021 1312.473363 1562.053243 0.701680007 0.746090091 0.809684452 1.038416823 1.027299763 1.092169979 1.490450553 2.446291148 0.840223192 1 10.60922791 -2.538049395 0.746757589 0.850092026 22.3645428 0.962915881 0.094656141 4.874118634 0.237704555 0.02131229 152.1655525 0.002897014 2.538049395 21.51445078 up TVAISDAAQLPHDYCTTPGGTLFS(ph)TTPGGTR ddPTM_HeLa_CUDC101_4h_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 0 TVAISDAAQLPHDY(0.002)CT(0.05)T(0.05)PGGT(0.08)LFS(0.246)T(0.246)T(0.246)PGGT(0.08)R 89.694 9.77E-08 40137000 1523.6 1446.7 1015.1 1230.9 1464.9 1286.9 875.38 817.63 1578.1 866.57 TRUE FALSE FALSE 1345.005918 1491.271112 1069.979377 1281.101422 1356.837245 1262.354527 909.1436998 910.7056942 1513.05005 861.4156031 1.561390243 1.731186557 1.242117478 1.487204803 1.575124993 1.46544191 1.055406585 1.057219873 1.756469287 1 9.750565646 -2.529144798 13.32751679 1.320353333 1.306371986 0 0.279116762 0 0 0.03886449 0 0.002957026 2.529144798 -0.013981347 T(ph)SPSGGTWSSVVSGVPR ddPTM_HeLa_CUDC101_4h_R1 3 TSPSGGTWSSVVSGVPR 17 0 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHH4;A0A5F9ZHX3 Q99700 ATXN2 Ataxin-2 1 0 T(0.454)S(0.454)PS(0.032)GGT(0.06)WSSVVSGVPR;T(0.869)S(0.131)PSGGTWSSVVSGVPR;T(0.857)S(0.142)PS(0.001)GGTWSSVVSGVPR ;; 298.1 2.82E-122 282967000 9562.4 8971.4 8116.6 7877.7 8918.3 9732.9 9151.2 7727.28 9191.3 9529.2 TRUE FALSE FALSE 8441.509968 9247.7982 8555.407947 8198.986656 8260.414777 9547.261149 9504.164849 8606.92232 8812.430724 9472.519895 0.891157798 0.976276461 0.90318184 0.865554968 0.872039845 1.007890324 1.003340711 0.908620137 0.930315357 1 13.20953255 -2.519851919 10.45791706 0.941872459 0.799208092 0 0.053580154 0 0 0.008052598 0 0.003020982 2.519851919 -0.142664367 NVGESVAAALS(ph)PLGIEVDIDVEHGGKR ddPTM_HeLa_CUDC101_4h_R1 2 NVGESVAAALSPLGIEVDIDVEHGGKR 27 1 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 NVGESVAAALS(1)PLGIEVDIDVEHGGKR;NVGES(0.001)VAAALS(0.999)PLGIEVDIDVEHGGKR ; 140.93 5.09E-11 36814000 3209.5 2960.6 2813.7 2600.8 3504.5 2839.8 1990.66 1853.2 3221.3 3600.6 TRUE FALSE FALSE 2833.287275 3051.812577 2965.817133 2706.871866 3245.980017 2785.635546 2067.440423 2064.160797 3088.516651 3579.183471 0.791601576 0.852656088 0.828629534 0.756281953 0.906905176 0.778288 0.577629071 0.576712765 0.862910962 1 11.80541478 -2.519732904 0.127426137 1.050230258 4.12E-25 0.617018959 0.078345724 27.90415432 0.353470293 0.357135347 5.0524288 0.00302181 2.519732904 -1.050230258 TLVLLMGK ddPTM_HeLa_CUDC101_4h_R1 1 TLVLLMGK 8 0 P07737;K7EJ44;CON__P02584 P07737 PFN1 Profilin-1 0 0 111.82 0.015405 2464200 3963.6 1161 348.23 1585.7 1289.3 1486.3 998.09 819.41 351.89 0 FALSE FALSE TRUE 3498.992816 1196.769034 367.0563671 1650.3717 1194.190908 1457.951304 1036.586666 912.6883222 337.3849453 0 0 TLVLSDK(ac)HSPQK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TLVLSDKHSPQKK 13 2 Q8NEZ4;Q8NEZ4-3;Q8NEZ4-2;H7BY37 Q8NEZ4 KMT2C Histone-lysine N-methyltransferase 2C 0 2 ; TLVLSDK(1)HSPQK(1)K;TLVLSDK(1)HSPQK(1)K 100.73 0.0073755 9151800 6711.7 4374.6 5216.6 5171.9 8035.8 8684.6 8504.2 7945.7 3993.9 4015.3 FALSE TRUE FALSE 5924.9647 4509.376241 5498.625175 5382.832437 7443.015044 8518.955725 8832.209843 8850.20637 3829.269752 3991.416817 1.484426451 1.129768312 1.377612369 1.348601934 1.864755145 2.134318743 2.212800679 2.217309486 0.959376063 1 11.96268523 -5.627573023 1.551222425 1.231310155 2.224708529 0.89893321 0.149869314 0.106987851 0.512819184 0.028415752 0.075809402 2.36E-06 5.627573023 0.993398374 TLWLFDIDRDPEER ddPTM_HeLa_CUDC101_4h_R1 2 TLWLFDIDRDPEER 14 1 P15848 P15848 ARSB Arylsulfatase B 0 0 ; ; 117.03 0.00233 10777600 6323.3 6407 5275.5 5100.4 5924.9 5491.1 5188.3 5276.4 5089.1 5648 FALSE FALSE TRUE 5582.09236 6604.392076 5560.709488 5308.416358 5487.831931 5386.366416 5388.414469 5877.044048 4879.325144 5614.405445 0.994244611 1.176329736 0.990436039 0.945499289 0.97745558 0.959383228 0.959748013 1.046779415 0.869072459 1 12.45491754 -6.530250155 24.99807462 1.014098988 0.974955918 0.038628331 0.073790807 352.3900052 1195028.489 0.009365912 0.013259927 2.95E-07 6.530250155 -0.03914307 S(ph)SPAFTK ddPTM_HeLa_CUDC101_4h_R1 2 SSPAFTK 7 0 Q5VVQ6-2;Q5VVQ6 Q5VVQ6-2 YOD1 Ubiquitin thioesterase OTU1 1 0 S(0.912)S(0.088)PAFTK;S(0.912)S(0.088)PAFTK ; 96.034 0.026501 28340000 9406.5 6488.9 7483.2 8794.5 7198.3 6808 7113 4548.1 8758.8 9239.8 TRUE FALSE FALSE 8303.884329 6688.815318 7887.764427 9153.177723 6667.29575 6678.148743 7387.350793 5065.83732 8397.758557 9184.841259 0.904085775 0.728245065 0.858780702 0.996552631 0.725902121 0.727083741 0.804298146 0.551543263 0.914306336 1 13.16503907 -2.506155773 0.168240067 1.030147805 7.27E-12 0.529686673 0.091816923 18.68102558 0.307639081 0.153541917 4.423933727 0.003117771 2.506155773 -1.030147805 LLSPRPS(ph)LLTPTGDPR ddPTM_HeLa_CUDC101_4h_R1 1 LLSPRPSLLTPTGDPR 16 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;C9JQE8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 LLS(0.394)PRPS(0.47)LLT(0.135)PT(0.001)GDPR 61.096 0.031562 101030000 5325.6 4411.4 4420.5 4521.3 4776.2 3907.7 3580.4 3231.4 4855.7 5179.2 TRUE FALSE FALSE 4701.341241 4547.310005 4659.485601 4705.698157 4423.869242 3833.167133 3718.497227 3599.249514 4655.545991 5148.393888 0.91316658 0.883248272 0.905036736 0.914012847 0.859271714 0.744536494 0.722263546 0.699101427 0.904271525 1 12.32990672 -2.503037181 0.228880813 0.995045049 7.33E-19 0.844034686 0.03699693 5.270151745 0.11635991 0.023974256 1.71477543 0.00314024 2.503037181 -0.995045049 EESEES(ph)DEDMGFGLFD ddPTM_HeLa_CUDC101_4h_R1 3 EESEESDEDMGFGLFD 16 0 F8VWS0;P05388-2;Q8NHW5;P05388;F8W1K8 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 1 0 EES(0.002)EES(0.998)DEDMGFGLFD;EES(0.002)EES(0.998)DEDMGFGLFD;EES(0.1)EES(0.9)DEDMGFGLFD ;; 186.51 1.46E-10 47032000 4538.69 3611.78 3509.96 3242.77 3928.8 3246.47 3337.07 2412.89 4164.97 3988.9 TRUE FALSE FALSE 4006.671638 3723.054661 3699.719055 3375.024177 3638.980251 3184.548994 3465.781908 2687.563644 3993.288174 3965.173845 1.010465567 0.93893857 0.933053429 0.851166761 0.917735361 0.803129728 0.874055475 0.677792135 1.007090314 1 11.9531684 -2.5004076 0.267089695 1.020216631 1.84E-13 0.818177703 0.042296883 6.09963097 0.155751228 0.020758745 2.451265679 0.003159311 2.5004076 -1.020216631 RDYDDMS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 RDYDDMSPR 9 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 0 RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR ;; 158.06 0.00018026 984790000 11382.3 10216 10647.7 9948.7 10341.8 10074.2 9270 7397.7 11388.3 11215.4 TRUE FALSE FALSE 10048.08405 10530.74285 11223.34687 10354.45099 9578.906018 9882.05142 9627.547005 8239.824265 10918.86945 11148.6903 0.901279323 0.944572193 1.006696443 0.928759406 0.859195633 0.886386755 0.863558566 0.739084506 0.979385843 1 13.44458662 -2.482513796 0.393110316 0.961253446 2.46E-13 0.771170936 0.036552346 8.795406386 0.31281539 0.011465219 5.410657812 0.0032922 2.482513796 -0.961253446 EASTTAAAPGEETS(ph)PVQVPAR ddPTM_HeLa_CUDC101_4h_R1 2 EASTTAAAPGEETSPVQVPAR 21 0 Q5SXM2 Q5SXM2 SNAPC4 snRNA-activating protein complex subunit 4 1 0 EASTTAAAPGEET(0.054)S(0.946)PVQVPAR;EASTTAAAPGEET(0.087)S(0.913)PVQVPAR ; 232.6 1.15E-45 32559000 5563.3 5132.2 4462 4758.8 5403.5 5045.8 4649 4144.9 5940.5 5097.7 TRUE FALSE FALSE 4911.178407 5290.316999 4703.229217 4952.884433 5004.89457 4949.559772 4828.313487 4616.738662 5695.630076 5067.378654 0.969175336 1.043994807 0.928138499 0.977405632 0.987669348 0.976749541 0.952822715 0.911070393 1.123979569 1 12.30702392 -2.465742602 0.706382681 0.985992604 1.99E-15 0.20575446 0.051268719 21.23986991 0.94244546 0.004321389 28.68880856 0.003421822 2.465742602 -0.985992604 TSVS(ph)PAPDK ddPTM_HeLa_CUDC101_4h_R1 1 TSVSPAPDK 9 0 O75362 O75362 ZNF217 Zinc finger protein 217 1 0 T(0.195)S(0.003)VS(0.802)PAPDK 84.479 0.036457 37931000 16722 14520 16667 16264 16089 14522 14497 11624 15452 17310 TRUE FALSE FALSE 14761.87251 14967.34399 17568.06843 16927.31622 14902.14652 14245.01705 15056.15415 12947.22917 14815.06202 17207.03935 0.857897295 0.869838424 1.020981476 0.98374368 0.866049424 0.827859852 0.874999693 0.752437936 0.860988443 1 14.07071127 -2.465137395 0.431732385 0.939582864 1.64E-19 0.395576455 0.062139468 16.55900141 0.623422671 0.016166659 11.25908978 0.003426594 2.465137395 -0.939582864 TMLEDLGMDDEGDDDPVPLPNVNAAILKK ddPTM_HeLa_CUDC101_4h_R1 1 TMLEDLGMDDEGDDDPVPLPNVNAAILKK 29 1 E5RJR5;P63208;E5RGM3;E7ERH2;F8W8N3;P63208-2;E5RI56 E5RJR5 SKP1 S-phase kinase-associated protein 1 0 0 106.93 2.32E-10 7310400 864.47 937.41 871.09 770.44 1003.1 945.72 658.57 1127.4 782.97 806.1 FALSE FALSE TRUE 763.1381371 966.290491 918.1837603 801.8618733 929.1033115 927.6819667 683.9712655 1255.738659 750.6956452 801.3052813 0.952368785 1.205895572 1.145860113 1.000694607 1.159487318 1.157713531 0.853571393 1.567116414 0.936841005 1 9.646208175 -4.250157057 24.80233981 1.023032615 1.567116768 0.653043876 0.112895211 712.2523232 1565738.189 0.015963614 0.331816598 5.62E-05 4.250157057 0.544084153 KVTGTEGSSSTLVDYTSTSSTGGS(ph)PVR ddPTM_HeLa_CUDC101_4h_R1 1 KVTGTEGSSSTLVDYTSTSSTGGSPVR 27 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 KVTGTEGSSSTLVDY(0.005)T(0.041)S(0.006)T(0.02)S(0.065)S(0.042)T(0.042)GGS(0.779)PVR 127.73 4.32E-11 15383000 5137.6 3987.1 4122.1 4249.6 4728.1 4009.1 4037.3 3181.6 4894.8 4484.7 TRUE FALSE FALSE 4535.378316 4109.937825 4344.953195 4422.917056 4379.317483 3932.633097 4193.020013 3543.780484 4693.034272 4458.024805 1.017351521 0.921919012 0.974636388 0.99212482 0.982344799 0.882146975 0.940555559 0.794921661 1.052716052 1 12.12218893 -2.460680481 0.425774562 1.004641281 2.13E-16 0.709160796 0.038210399 7.330782349 0.272423964 0.007878579 5.239418338 0.00346194 2.460680481 -1.004641281 TMTELEIDMNQR ddPTM_HeLa_CUDC101_4h_R1 1 TMTELEIDMNQR 12 0 P45974-2;P45974 P45974-2 USP5 Ubiquitin carboxyl-terminal hydrolase 5 0 0 112.3 0.025227 6389800 1089.2 1177.2 982.59 972.41 1300.8 791.41 993.43 873.82 1417 1179.3 FALSE FALSE TRUE 961.5256271 1213.468137 1035.711788 1012.069083 1204.842576 776.3151728 1031.746928 973.2921367 1358.59066 1172.285471 0.820214573 1.035130236 0.88349793 0.863329887 1.027772335 0.662223658 0.880115768 0.830251812 1.158924762 1 10.19510822 -13.52287875 0.308959789 2.200667044 0.860540436 0.313628485 0.11078099 60.07515124 0.81229304 45.14041817 0.038580592 3.00E-14 13.52287875 -1.340126609 EATGLS(ph)PQAAQEK ddPTM_HeLa_CUDC101_4h_R1 4 EATGLSPQAAQEK 13 0 P17029;C9JRM9 P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 1 0 EAT(0.014)GLS(0.986)PQAAQEK;EAT(0.122)GLS(0.878)PQAAQEK;EAT(0.001)GLS(0.999)PQAAQEK;EAT(0.23)GLS(0.77)PQAAQEK ;;; 150.34 0.00033231 109632000 9519.04 8783.9 7618.1 8489.9 7912.8 8225.1 7158.1 5781.03 7469.8 9091 TRUE FALSE FALSE 8403.232561 9054.521548 8029.957529 8836.154818 7329.088509 8068.219921 7434.190315 6439.119087 7161.891682 9036.926328 0.92987729 1.001947036 0.88857176 0.977783208 0.811015631 0.892805765 0.822645891 0.712534202 0.792514116 1 13.14161645 -2.455318776 0.317890296 0.980132991 3.88E-13 0.370628116 0.073234497 7.048912298 0.206438522 0.014970247 3.394861203 0.003504945 2.455318776 -0.980132991 TPS(ph)PPPPIPEDIALGK ddPTM_HeLa_CUDC101_4h_R1 1 TPSPPPPIPEDIALGK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 T(0.07)PS(0.93)PPPPIPEDIALGK 149.22 0.00019431 8503900 939.63 1243.8 1156.1 1011.3 1087.3 1112.7 964.66 949.95 1078.2 1207.5 TRUE FALSE FALSE 829.4879958 1282.120004 1218.602263 1052.545185 1007.092045 1091.477101 1001.867259 1058.088468 1033.75614 1200.317736 0.691057018 1.068150511 1.015233072 0.876888805 0.839021215 0.90932348 0.834668379 0.881506985 0.861235412 1 10.22920064 -2.4499534 11.44730146 0.879011644 0.88844893 0 0.104453821 0 0 0.017568534 0 0.003548515 2.4499534 0.009437286 TNEEEK(ac)WLAR ddPTM_HeLa_CUDC101_4h_R1 1 TNEEEKWLAR 10 1 Q14687-3;Q14687;Q14687-2;H0Y613 Q14687-3 GSE1 Genetic suppressor element 1 0 1 TNEEEK(1)WLAR 97.452 0.013004 863680 134.58 238.12 156.91 326.38 289.63 203.68 253.52 362.91 56.852 114.88 FALSE TRUE FALSE 118.8047364 245.456195 165.3930292 339.6911871 268.2645719 199.7951434 263.2983513 404.2222075 54.5085365 114.1966887 1.040351851 2.149416046 1.448317208 2.974615036 2.349144928 1.749570375 2.305656621 3.539701652 0.477321516 1 6.835377007 -6.892559682 1.020668312 0.988341338 2.513130363 0.628749331 0.547405979 0.229515499 0.473516862 0.101021419 0.145571734 1.28E-07 6.892559682 1.524789025 TNEK(ac)VELQELNDR ddPTM_HeLa_CUDC101_4h_R1 2 TNEKVELQELNDR 13 1 P08670;B0YJC4;A0A1B0GTT5;P17661 P08670 VIM;DES Vimentin;Desmin 0 1 ; TNEK(1)VELQELNDR;TNEK(1)VELQELNDR 283.47 4.79E-81 9996800 1821.52 1022.74 1242.66 967.52 2926.1 2174.99 2764.1 2401.6 2263.6 1758.48 FALSE TRUE FALSE 1608.004187 1054.249407 1309.841958 1006.979648 2710.247433 2133.50569 2870.712263 2674.988436 2170.29345 1748.020483 0.919900083 0.603110443 0.749328724 0.576068563 1.550466633 1.22052671 1.64226466 1.530295819 1.241572093 1 10.77150637 -5.74631812 24.99234364 0.88950341 1.478103936 0.687719092 0.209344836 106.3282781 175737.8467 0.028465868 0.056755967 1.79E-06 5.74631812 0.588600526 TNEKVELQELNDR ddPTM_HeLa_CUDC101_4h_R1 2 TNEKVELQELNDR 13 1 P08670;B0YJC4;A0A1B0GTT5;P17661 P08670 VIM;DES Vimentin;Desmin 0 0 ; ; 115.12 0.0040603 254640000 2846.1 3429.5 3296.2 3148.3 5055.9 3407.2 3936.6 4605.8 3845.8 4000.7 FALSE FALSE TRUE 2512.484472 3535.15883 3474.402542 3276.701282 4682.93633 3342.213337 4088.435981 5130.105655 3687.274496 3976.903658 0.631769006 0.888922421 0.873645137 0.823932779 1.17753326 0.84040591 1.028045015 1.289974839 0.927172195 1 11.9574299 -5.779028554 24.903354 0.831123111 1.062594847 0.371249077 0.14076989 215.85264 305611.2817 0.025092099 0.045556624 1.66E-06 5.779028554 0.231471736 TNK(ac)NK(ac)SSISR ddPTM_HeLa_CUDC101_4h_R1 2 TNKNKSSISR 10 2 Q92793;Q92793-2 Q92793 CREBBP CREB-binding protein 0 2 ; TNK(1)NK(1)SSISR;TNK(1)NK(1)SSISR 125.72 0.0045823 1052310 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 ASLLT(ph)DEEDVDMALDQR ddPTM_HeLa_CUDC101_4h_R1 3 ASLLTDEEDVDMALDQR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 0 AS(0.001)LLT(0.999)DEEDVDMALDQR;ASLLT(1)DEEDVDMALDQR;ASLLT(1)DEEDVDMALDQR ;; 283.22 8.65E-103 16777200 2886.09 2093.48 1985.29 2040.34 2750.39 2173.47 1999.12 1597.77 2386.98 2396.73 TRUE FALSE FALSE 2547.786905 2157.977637 2092.620783 2123.553884 2547.499209 2132.014681 2076.226728 1779.653678 2288.587674 2382.474143 1.069387012 0.905771693 0.878339347 0.891322951 1.069266257 0.894874216 0.871458242 0.746977122 0.96059287 1 11.21824484 -2.448973502 0.328213087 1.027275569 9.15E-17 0.402716378 0.072315566 12.59968786 0.378103798 0.025845732 6.626260936 0.00355653 2.448973502 -1.027275569 KAEEAGGTRLEPLK(ac)PLK ddPTM_HeLa_CUDC101_4h_R1 2 KAEEAGGTRLEPLKPLK 17 3 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 0 1 ; KAEEAGGTRLEPLK(1)PLK;K(0.003)AEEAGGTRLEPLK(0.997)PLK 67.846 0.015098 10635700 4813.2 5746.5 5936.5 6013.4 8188.9 6607.2 7410.2 8951.4 5824.3 4672.1 FALSE TRUE FALSE 4249.003992 5923.542854 6257.445147 6258.652444 7584.821162 6481.178668 7696.013896 9970.391193 5584.219889 4644.310141 0.914883775 1.275440846 1.347335763 1.347595715 1.633142691 1.395509445 1.657084403 2.146797025 1.202378764 1 12.1812486 -1.227316963 0.241153335 0.896065071 7.267273026 0.778433804 0.158438108 11.3784377 0.155105773 0.090957785 28.74798769 0.059249275 1.227316963 6.371207955 RIS(ph)LSDMPR ddPTM_HeLa_CUDC101_4h_R1 2 RISLSDMPR 9 1 A0A087WVZ6;A0A087WYS3;H7C4X9;A0A087WV57;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-16;Q9ULU4-4;Q9ULU4-12;Q9ULU4-14;Q9ULU4-21;Q9ULU4-8;Q9ULU4-23;Q9ULU4-17;Q9ULU4-6;Q9ULU4-3;Q9ULU4-19;Q9ULU4-18;Q9ULU4-15 A0A087WVZ6 ZMYND8 Protein kinase C-binding protein 1 1 0 RIS(0.753)LS(0.247)DMPR;RIS(0.8)LS(0.2)DMPR ; 88.021 0.016777 11801400 2404.9 2021.68 2104.33 2623.7 2964.7 3180.2 3448.7 3986.8 1953.14 2026.32 TRUE FALSE FALSE 2123.001268 2083.965565 2218.096445 2730.705827 2745.999988 3119.542984 3581.717514 4440.641197 1872.630743 2014.267359 1.053981865 1.034602262 1.101192667 1.355681913 1.363274828 1.548723396 1.778173835 2.204593734 0.929683309 1 10.97603947 -2.446325038 0.381100279 0.99813808 6.852885055 0.981971266 0.052000278 1.556348091 0.052739676 0.012650217 5.638756975 0.003578285 2.446325038 5.854746975 up TNNVSEHEDTDK(ac)YR ddPTM_HeLa_CUDC101_4h_R1 1 TNNVSEHEDTDKYR 14 1 E9PP73;P53618 E9PP73 COPB1 Coatomer subunit beta 0 1 TNNVSEHEDTDK(1)YR 94.023 0.021789 278510 185.98 0 0 0 154.71 0 0 0 142.21 0 FALSE TRUE FALSE 164.1797063 0 0 0 143.2973515 0 0 0 136.3480436 0 0 TNPPLIQEK(ac)PAK ddPTM_HeLa_CUDC101_4h_R1 2 TNPPLIQEKPAK 12 1 H0Y3P2;D3DQV9;P78344-2;P78344;E9PKF8 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 0 1 ; TNPPLIQEK(1)PAK;TNPPLIQEK(1)PAK 174.23 1.52E-06 2635700 2248.91 1097.67 848.7 859.87 1482.28 1583.76 1624.49 1547.87 1345.25 1298.36 FALSE TRUE FALSE 1985.296179 1131.487912 894.5832892 894.9392153 1372.935158 1553.552417 1687.147123 1724.073264 1289.798226 1290.637297 1.538229357 0.876689302 0.69313299 0.693408766 1.063765289 1.203709532 1.307220183 1.335830964 0.999349878 1 10.33386791 -7.237046381 24.87784874 1.2541639 1.018558004 0.047335012 0.257349124 1232.371276 1256867.945 0.051246893 0.062748232 5.79E-08 7.237046381 -0.235605895 NENLQESEILS(ph)QPK ddPTM_HeLa_CUDC101_4h_R1 1 NENLQESEILSQPK 14 0 Q86YC2;H3BN63 Q86YC2 PALB2 Partner and localizer of BRCA2 1 0 NENLQESEILS(1)QPK 188 1.67E-23 0 1263.7 877.24 1089.1 938.77 1161.3 1415.2 1119.5 2589.2 1081.8 1023.7 TRUE FALSE FALSE 1115.571002 904.2667246 1147.98004 977.0570983 1075.633213 1388.207418 1162.67949 2883.944062 1037.207746 1017.610987 1.096264698 0.888617297 1.12811286 0.960147945 1.057018081 1.364182812 1.142557918 2.834033928 1.019257614 1 9.990970437 -2.432158364 1.300139311 1.041529472 200 0.940506734 0.132249621 24.43209012 0.471200723 0.017894869 14100.15416 0.003696933 2.432158364 198.9584705 up S(ph)ISREPS(ph)PALGPNLDGSGLLPR ddPTM_HeLa_CUDC101_4h_R1 1 SISREPSPALGPNLDGSGLLPR 22 1 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 2 0 S(0.786)IS(0.51)REPS(0.704)PALGPNLDGSGLLPR 58.622 0.01801 35252000 3186.1 2808.7 2203 2587.6 2934.5 2487.5 2147.7 1831.7 2777.5 3002.3 TRUE FALSE FALSE 2812.630188 2895.232718 2322.100844 2693.133513 2718.027781 2440.055082 2230.537508 2040.213324 2663.010274 2984.442186 0.942430784 0.970108495 0.77806863 0.902390914 0.910732261 0.817591674 0.747388413 0.6836163 0.892297491 1 11.54324559 -2.427127361 0.236784543 1.001277903 2.40E-15 0.654069362 0.057638726 8.172882915 0.180810108 0.032691614 2.807578363 0.003740009 2.427127361 -1.001277903 TNQELQEINR ddPTM_HeLa_CUDC101_4h_R1 2 TNQELQEINR 10 0 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5;H0YKS4;H0YNA0;H0YMM1;H0YN52;H0YLE2 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ; ; 206.49 4.32E-23 98059000 3001.3 2571.1 2723.2 2942.2 2970.5 3351.7 2518.33 2651 2725.22 2459.7 FALSE FALSE TRUE 2649.492164 2650.312543 2870.424429 3062.195633 2751.372133 3287.771907 2615.462832 2952.779124 2612.885278 2445.069595 1.083606033 1.083941557 1.173964306 1.252396103 1.125273546 1.344653712 1.069688502 1.207646249 1.068634318 1 11.25565981 -7.259941192 0.73242082 1.019991038 1.202007166 0.449023939 0.072884128 0.3308365 0.37049309 0.017776449 0.021186202 5.50E-08 7.259941192 0.182016128 RDEDMLYS(ph)PELAQR ddPTM_HeLa_CUDC101_4h_R1 3 RDEDMLYSPELAQR 14 1 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 1 0 RDEDMLYS(1)PELAQR;RDEDMLYS(1)PELAQR;RDEDMLYS(1)PELAQR ;; 110.57 0.00031806 12364200 5700.8 4787.2 4512.15 4250.69 4545.2 4863.5 3866.05 3025.29 5721.5 5603.7 TRUE FALSE FALSE 5032.560866 4934.687958 4756.090478 4424.051511 4209.909651 4770.736841 4015.164844 3369.676785 5485.657348 5570.368943 0.903451983 0.885881709 0.853819653 0.794211579 0.755768549 0.856448987 0.720807703 0.604928833 0.984792462 1 12.44355717 -2.415770945 0.162992589 1.03693412 2.06E-17 0.869448739 0.041458139 9.740423534 0.151424983 0.080004062 2.252880522 0.003839097 2.415770945 -1.03693412 AES(ph)PDLR ddPTM_HeLa_CUDC101_4h_R1 2 AESPDLR 7 0 A0A0B4J203;Q6UN15-4;Q6UN15;Q6UN15-5 A0A0B4J203;Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 AES(1)PDLR;AES(1)PDLR ; 114.89 0.012962 920770000 16023.6 12818.6 13576.4 13935.7 14161 12889 13138.5 10313.9 14077.1 14206.3 TRUE FALSE FALSE 14145.3379 13213.52587 14310.38125 14504.05808 13116.37124 12643.1638 13645.25635 11487.99269 13496.83598 14121.8003 1.001666756 0.935682816 1.013353889 1.02706863 0.928803054 0.895294051 0.966254731 0.813493496 0.955744714 1 13.7856364 -2.408010835 0.456737469 1.000044557 3.05E-11 0.56647187 0.040353358 9.625237862 0.359057476 0.007766225 7.56675119 0.003908311 2.408010835 -1.000044557 NDNGASGQTSESIKKS(ph)EEK ddPTM_HeLa_CUDC101_4h_R1 1 NDNGASGQTSESIKKSEEK 19 2 Q9NWH9;Q9NWH9-3 Q9NWH9 SLTM SAFB-like transcription modulator 1 0 NDNGASGQT(0.001)S(0.002)ES(0.033)IKKS(0.964)EEK 54.668 0.0199 44492000 3315.4 2923.9 3221.3 3006.5 2725.4 2874.7 2335.3 2177.3 3033.4 3632 TRUE FALSE FALSE 2926.773838 3013.981893 3395.453222 3129.118065 2524.352672 2819.869887 2425.373303 2425.155031 2908.361968 3610.396702 0.810651593 0.834806295 0.940465412 0.866696467 0.699189834 0.781041564 0.671774739 0.671714283 0.805551912 1 11.81794165 -2.407955772 0.075435687 1.212532532 1.12E-15 0.428047997 0.078698093 65.24006156 0.484963262 1.635342441 8.751754295 0.003908807 2.407955772 -1.212532532 AFAAVPTSHPPEDAPAQPPTPGPAAS(ph)PEQLSFR ddPTM_HeLa_CUDC101_4h_R1 4 AFAAVPTSHPPEDAPAQPPTPGPAASPEQLSFR 33 0 A0A0G2JMS7;A0A0G2JNZ2;A0A669KB89;Q14160-2;Q14160;A0A0G2JPP5;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 0 AFAAVPTSHPPEDAPAQPPT(0.005)PGPAAS(0.954)PEQLS(0.041)FR;AFAAVPTSHPPEDAPAQPPT(0.076)PGPAAS(0.885)PEQLS(0.039)FR;AFAAVPTSHPPEDAPAQPPT(0.001)PGPAAS(0.993)PEQLS(0.007)FR;AFAAVPTSHPPEDAPAQPPT(0.063)PGPAAS(0.868)PEQLS(0.069)FR ;;; 138.76 4.08E-23 130527000 10443.1 9402.6 8104.9 8027.7 9453.3 8169.5 6637.62 6504.69 9597.6 9974.1 TRUE FALSE FALSE 9218.975649 9692.282961 8543.07541 8355.104305 8755.948893 8013.680399 6893.635227 7245.157617 9201.982866 9914.77361 0.929822103 0.977559684 0.861651082 0.842692394 0.883121414 0.808256518 0.695289222 0.730743626 0.928108218 1 13.27536412 -2.403673592 0.222395049 1.004857144 3.78E-17 0.822285697 0.039983428 6.090428583 0.125996296 0.027198884 1.951884794 0.003947539 2.403673592 -1.004857144 SVEDEMDS(ph)PGEEPFYTGQGR ddPTM_HeLa_CUDC101_4h_R1 5 SVEDEMDSPGEEPFYTGQGR 20 0 A0A590UJA3;S4R3W2;A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UK73;B1AKN7 A0A590UJA3 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 SVEDEMDS(1)PGEEPFYTGQGR;SVEDEMDS(0.849)PGEEPFY(0.027)T(0.124)GQGR;SVEDEMDS(0.997)PGEEPFY(0.003)TGQGR;SVEDEMDS(1)PGEEPFYTGQGR;SVEDEMDS(1)PGEEPFYTGQGR ;;;; 263.47 2.91E-71 201974800 15240.2 11766.1 11066.7 11786 11917.2 11689.2 10427.1 8048.6 13587 14043.4 TRUE FALSE FALSE 13453.76686 12128.59959 11664.99928 12266.68402 11038.0919 11466.24799 10829.27674 8964.82009 13026.93811 13959.86923 0.963745909 0.868818998 0.835609495 0.878710525 0.790701669 0.821372163 0.775743423 0.642185105 0.933170497 1 13.76899781 -2.402391895 0.187070584 1.035883004 1.22E-09 0.822512049 0.041442874 7.104661107 0.125123294 0.04547018 1.917061443 0.003959206 2.402391895 -1.035883003 AQAVS(ph)EDAGGNEGR ddPTM_HeLa_CUDC101_4h_R1 1 AQAVSEDAGGNEGR 14 0 P55884;P55884-2;C9JZG1 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 1 0 AQAVS(1)EDAGGNEGR 166.3 1.24E-05 16753000 1785.4 1917.7 1738 1689.3 2427.5 1862.7 1637.3 2392.1 2039.5 1762.7 TRUE FALSE FALSE 1576.118118 1976.782064 1831.961537 1758.196956 2248.428161 1827.172101 1700.451209 2664.406995 1955.430947 1752.215382 0.899500218 1.128161574 1.045511617 1.003413721 1.283191658 1.042778256 0.970457871 1.520593314 1.115976362 1 10.77496441 -2.397805891 1.591952411 0.99888406 188.2210355 0.543114461 0.115908354 264.6967219 2.358883023 0.01760737 179580.9733 0.004001235 2.397805891 187.2221514 (ac)S(ph)ETAPAAPAAAPPAEKAPVK ddPTM_HeLa_CUDC101_4h_R1 3 SETAPAAPAAAPPAEKAPVK 20 1 P16403 P16403 HIST1H1C Histone H1.2 1 0 S(0.5)ET(0.5)APAAPAAAPPAEKAPVK;S(0.5)ET(0.5)APAAPAAAPPAEKAPVK;S(0.5)ET(0.5)APAAPAAAPPAEKAPVK ;; 65.219 1.60E-05 20807900 3122.57 3987.3 4765.2 4873.3 5926.5 4086.2 4674.8 12815.8 4143.2 2291.38 TRUE FALSE FALSE 2756.547078 4110.143987 5022.821126 5072.054238 5489.313902 4008.262543 4855.108602 14274.69887 3972.415542 2277.75077 1.21020575 1.804474854 2.205167129 2.226781922 2.409971264 1.759745884 2.131536367 6.267015276 1.74400799 1 11.15339418 -2.387054265 0.99642598 1.374641923 200 0.840767851 0.557376595 20.90131344 0.618801288 0.099524472 8875.791739 0.004101529 2.387054265 198.6253581 up QSPGSTS(ph)PKPPHTLSR ddPTM_HeLa_CUDC101_4h_R1 1 QSPGSTSPKPPHTLSR 16 1 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 1 0 QS(0.006)PGS(0.018)T(0.265)S(0.661)PKPPHT(0.045)LS(0.005)R 56.428 0.039202 14507000 4993 3397.8 3750.1 3404.4 4509.4 3990.1 3400.8 2365.3 4254.7 4728.9 TRUE FALSE FALSE 4407.728109 3502.482191 3952.841749 3543.246147 4176.750546 3913.99549 3531.969995 2634.556191 4079.319465 4700.772292 0.937660417 0.745086546 0.840891986 0.753758303 0.888524329 0.832628183 0.751359516 0.560451778 0.867797717 1 12.19868208 -2.385387674 0.144216552 1.069131669 1.57E-16 0.469816714 0.084867531 21.08059078 0.289570388 0.212985737 4.415110735 0.004117298 2.385387674 -1.069131669 EEAAT(ph)GGGSTGEADGK ddPTM_HeLa_CUDC101_4h_R1 1 EEAATGGGSTGEADGK 16 0 O43242 O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3 1 0 EEAAT(0.939)GGGS(0.035)T(0.026)GEADGK 161.82 0.00024147 8551400 910.78 735.64 658.1 677.26 772.84 617.95 779.24 395.36 1102.7 887.33 TRUE FALSE FALSE 804.0197491 758.3041965 693.6788766 704.8815902 715.8291329 606.1636333 809.2955478 440.3661843 1057.246239 882.0521217 0.91153315 0.859704521 0.786437513 0.799138251 0.811549698 0.687219744 0.917514428 0.499251885 1.198621049 1 9.784720099 -2.382647642 0.132503812 1.081831007 7.35E-20 0.611773395 0.10970749 25.67345646 0.325401386 0.297265649 4.987793214 0.004143357 2.382647642 -1.081831007 GYGFVDFDS(ph)PAAAQK ddPTM_HeLa_CUDC101_4h_R1 2 GYGFVDFDSPAAAQK 15 0 E7EPF2;C9J9B2;E7ETU5;F6Y5H0;C9JIJ9;A0A1B0GUW5;P29558-2;P29558;Q6XE24-3;Q6XE24-4;Q6XE24-5;Q6XE24-2;Q6XE24 E7EPF2 RBMS1;RBMS3 "RNA-binding motif, single-stranded-interacting protein 1;RNA-binding motif, single-stranded-interacting protein 3" 1 0 GYGFVDFDS(1)PAAAQK;GYGFVDFDS(1)PAAAQK ; 194.77 3.62E-16 48845000 5642.5 5252.1 4614.1 4571.1 5055.2 4842.9 4204.8 3534.8 5451.2 5289.4 TRUE FALSE FALSE 4981.094703 5413.910976 4863.552203 4757.529216 4682.287967 4750.529751 4366.980545 3937.187344 5226.499229 5257.938414 0.94734748 1.029664205 0.924992235 0.90482787 0.890517842 0.903496652 0.830549961 0.748808189 0.994020625 1 12.36028153 -2.382398776 0.331892147 0.986239827 1.31E-13 0.865789071 0.029145141 5.695101684 0.166207594 0.010049651 2.944308098 0.004145732 2.382398776 -0.986239827 NLFASFPTEESSINYTFKT(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 2 NLFASFPTEESSINYTFKTPEK 22 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 0 NLFASFPT(0.006)EES(0.015)S(0.029)INY(0.181)T(0.246)FKT(0.524)PEK;NLFASFPT(0.002)EES(0.014)S(0.014)INY(0.028)T(0.117)FKT(0.825)PEK ; 98.747 0.00021635 563180000 8121.8 6058.9 6098 6043.2 7041.2 6456.7 5441.5 4814.8 7540.3 6795.5 TRUE FALSE FALSE 7169.774916 6245.567527 6427.676325 6289.667817 6521.784704 6333.549205 5651.380478 5362.89737 7229.485642 6755.080064 1.061390072 0.924573427 0.951532219 0.93110189 0.965463717 0.937597948 0.836611916 0.793905819 1.070229453 1 12.72175715 -2.376115251 0.32407027 1.028388002 1.68E-18 0.773827762 0.039190413 7.857205423 0.224078934 0.015198448 4.113408107 0.00420615 2.376115251 -1.028388002 EYAENIGDGRS(ph)PEFR ddPTM_HeLa_CUDC101_4h_R1 2 EYAENIGDGRSPEFR 15 1 A0A087WUB9;Q8WYA6-3;Q8WYA6-2;Q8WYA6-4;Q8WYA6 A0A087WUB9 CTNNBL1 Beta-catenin-like protein 1 1 0 EYAENIGDGRS(1)PEFR;EYAENIGDGRS(1)PEFR ; 144.88 0.0016553 45138000 5627.2 5421.8 4752.8 4881.8 4979.8 4767.1 4010.8 4008.4 4771.4 5942.1 TRUE FALSE FALSE 4967.588146 5588.839232 5009.750744 5080.900905 4612.450075 4676.17551 4165.4979 4464.700053 4574.720872 5906.756125 0.841001057 0.946177413 0.848139087 0.860184642 0.780877012 0.791665579 0.705209054 0.755863279 0.774489546 1 12.52815033 -2.374225295 0.054486303 1.337438773 1.28E-12 0.181773215 0.076642401 91.91161903 0.493426698 3.214205036 11.05643893 0.004224494 2.374225295 -1.337438773 GGPGAAPGGAS(ph)PASSSSAASS(ph)PSSGR ddPTM_HeLa_CUDC101_4h_R1 1 GGPGAAPGGASPASSSSAASSPSSGR 26 0 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 2 0 GGPGAAPGGAS(0.993)PAS(0.007)S(0.007)S(0.003)S(0.017)AAS(0.004)S(0.915)PS(0.043)S(0.01)GR 169.33 2.85E-12 4522500 2448.8 1592.9 1974.8 1467.5 1968.7 2025.9 1836 1009.9 2092.8 2253.4 TRUE FALSE FALSE 2161.755376 1641.975361 2081.563661 1527.350993 1823.472923 1987.259333 1906.815135 1124.862934 2006.533898 2239.996677 0.965070796 0.733025802 0.92927087 0.681854134 0.81405162 0.887170661 0.85125802 0.502171698 0.895775391 1 11.12928088 -2.364788385 0.149114898 1.072024271 1.29E-09 0.355974248 0.114610349 28.35869867 0.39959294 0.269380838 6.173570209 0.004317294 2.364788385 -1.072024269 TNSTFNQVVLK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 TNSTFNQVVLKR 12 1 H0YHA7;J3QQ67;Q07020-2;Q07020;F8VYV2;G3V203;A0A075B7A0 H0YHA7 RPL18 60S ribosomal protein L18 0 1 ; TNSTFNQVVLK(1)R;TNSTFNQVVLK(1)R 184.44 9.37E-08 2755400 722.55 156.93 234.11 253.98 689.15 574.03 662.96 780.66 559.09 130.47 FALSE TRUE FALSE 637.8537843 161.7648273 246.7666947 264.3384022 638.3127775 563.0813341 688.5305893 869.5271789 536.0440736 129.6939586 4.918145695 1.24728113 1.902684576 2.038170513 4.921684743 4.341615755 5.308887141 6.704453993 4.133146055 1 7.018967468 -1 0.329409817 2.432841129 47.34385094 0.508811767 1.301114326 39.03269247 0.495623808 0.521292523 1081.297183 0.1 1 44.91100981 RT(ph)SQEGPGDSVK ddPTM_HeLa_CUDC101_4h_R1 1 RTSQEGPGDSVK 12 1 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 0 RT(0.893)S(0.107)QEGPGDSVK 136.39 0.013328 13838000 2053.1 1709.2 2180.5 1871.1 1951.9 1826.6 1555.6 1082.1 2215.6 2362.4 TRUE FALSE FALSE 1812.43873 1761.858426 2298.384426 1947.411546 1807.912226 1791.760648 1615.600013 1205.28189 2124.27203 2348.34834 0.771792966 0.750254294 0.978723806 0.829268602 0.769865439 0.762987593 0.687972898 0.513246638 0.904581315 1 11.19743071 -2.352803782 0.106096781 1.084672494 9.62E-31 0.599063049 0.085882443 48.10812359 0.490293761 0.738585895 7.581129469 0.004438091 2.352803782 -1.084672494 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVSVLSSGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVSVLSSGSPR 45 1 O14686;O14686-3;F8VWW4 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 0 LAGEDKDSEPAADGPAASEDPSATESDLPNPHVGEVS(0.193)VLS(0.143)S(0.315)GS(0.348)PR 110.18 3.11E-26 37032000 3300.3 2133.4 2173.1 2266 3023.2 3341.4 3055.4 2644.9 3421.8 3223.1 TRUE FALSE FALSE 2913.443837 2199.127525 2290.584359 2358.417274 2800.184559 3277.668362 3173.247801 2945.984725 3280.751956 3203.928858 0.909334747 0.686384631 0.714929844 0.736101636 0.873984624 1.023015338 0.990423927 0.919491304 1.023977779 1 11.6456264 -2.340682334 10.22882191 0.909779052 43.11971341 0 0.126458734 0 0 0.018551033 0 0.004563706 2.340682334 42.20993436 EPVAES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 EPVAESPK 8 0 A0A0G2JNN3;C9JMY0;A0A087WUE4;Q96PV6-1;Q96PV6 A0A0G2JNN3 LENG8 Leukocyte receptor cluster member 8 1 0 EPVAES(1)PK;EPVAES(1)PK;EPVAES(1)PK;EPVAES(1)PK ;;; 117.14 0.0083173 210107000 26146.3 19365.3 25367.3 25221.2 18269 19319.8 19450.1 15416.1 23268.9 26230.1 TRUE FALSE FALSE 23081.47035 19961.92194 26738.73297 26249.82955 16921.33227 18951.307 20200.29687 17171.00651 22309.74609 26074.0822 0.88522657 0.765584836 1.02549086 1.006740308 0.648971348 0.726825468 0.774727053 0.658546919 0.8556292 1 14.67032885 -2.338853963 0.191192528 1.002673741 1.04E-12 0.37267471 0.106807713 21.51056265 0.378439446 0.122157434 5.786800481 0.00458296 2.338853963 -1.002673741 TAPPALPTGY(ph)DSEEEEESRPMSYDEK ddPTM_HeLa_CUDC101_4h_R1 1 TAPPALPTGYDSEEEEESRPMSYDEK 26 1 P25440-2;P25440;A0A0G2JK44;A0A140T9E9;H0Y6K2;P25440-3;P25440-4;A0A0G2JHN8;A0A140T9I1 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 TAPPALPT(0.183)GY(0.634)DS(0.183)EEEEESRPMSYDEK 91.091 2.09E-05 138600000 2789.2 2176.7 2179.6 2328.7 2201.6 2025.2 2130.1 1594.4 2333.6 2785 TRUE FALSE FALSE 2462.254204 2243.761547 2297.435769 2423.674452 2039.192354 1986.572684 2212.258671 1775.900051 2237.40802 2768.434696 0.889403029 0.810480215 0.829868146 0.875467446 0.736586764 0.717579753 0.799100905 0.641481648 0.808185226 1 11.43485478 -2.338524841 0.088441464 1.187240578 7.90E-13 0.389277067 0.07394487 28.51915938 0.243401893 0.584282398 4.212051592 0.004586434 2.338524841 -1.187240578 S(ph)TFSTNYR ddPTM_HeLa_CUDC101_4h_R1 2 STFSTNYR 8 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.9)T(0.014)FS(0.06)T(0.025)NYR;S(0.96)T(0.018)FS(0.008)T(0.014)NYR ; 113.44 0.010016 232790000 1797.37 1623.01 1518.98 1625.34 1187.86 1426.72 1734.1 2091 966.07 1085.64 TRUE FALSE FALSE 1586.685013 1673.013014 1601.100653 1691.628391 1100.233934 1399.507693 1800.984818 2329.030988 926.2481857 1079.182565 1.470265611 1.550259491 1.483623536 1.567509007 1.019506773 1.296822001 1.668841655 2.158143639 0.858286833 1 10.07572323 -2.333527555 0.047407768 5.41E-44 3.725974422 0.48530548 0.260451134 313.5877248 1.455571105 32.81411268 97.3521971 0.004639514 2.333527555 3.725974422 TNYNDRYDEIR ddPTM_HeLa_CUDC101_4h_R1 2 TNYNDRYDEIR 11 1 P62424;Q5T8U2 P62424 RPL7A 60S ribosomal protein L7a 0 0 ; ; 117.14 0.0061503 62911000 7399.7 6574.2 6887 7136.3 6572.4 6776.2 6041.6 6971.3 6596.4 7341.7 FALSE FALSE TRUE 6532.318383 6776.74331 7259.332052 7427.34916 6087.567146 6646.955275 6274.626536 7764.884613 6324.4936 7298.031242 0.895079531 0.92857143 0.994697311 1.017719562 0.834138269 0.910787451 0.859769755 1.063969769 0.866602703 1 12.83329161 -5.775217834 24.99990217 0.955368015 0.912610897 0.045031748 0.071778514 480.9175635 872586.6859 0.010260395 0.018668108 1.68E-06 5.775217834 -0.042757118 TNYNDRYDEIRR ddPTM_HeLa_CUDC101_4h_R1 2 TNYNDRYDEIRR 12 2 P62424;Q5T8U2 P62424 RPL7A 60S ribosomal protein L7a 0 0 ; ; 65.842 0.031326 183542000 5443.5 4832.2 6346.9 5827.5 5857.6 5209.8 6034.5 7008.4 5078.5 4164.5 FALSE FALSE TRUE 4805.421182 4981.074354 6690.032612 6065.170639 5425.496518 5110.431745 6267.252686 7806.207927 4869.16208 4139.729369 1.160805636 1.203236712 1.616055548 1.465112837 1.310592079 1.234484501 1.513928117 1.885680737 1.176202995 1 12.01532074 -1.000000001 0.122818373 0.82571147 3.586578322 0.545613705 0.168164442 43.22206361 0.363150405 0.696687514 20.56544173 0.1 1.000000001 2.760866852 TSPTTPEAS(ph)ATNSPCTSKPAT(ph)PAPSEK ddPTM_HeLa_CUDC101_4h_R1 1 TSPTTPEASATNSPCTSKPATPAPSEK 27 1 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 2 0 T(0.004)S(0.002)PT(0.023)T(0.081)PEAS(0.499)AT(0.174)NS(0.216)PCT(0.026)S(0.026)KPAT(0.929)PAPS(0.02)EK 84.041 1.81E-05 7163200 4807.1 3550.6 3335.8 3925.8 3472.3 4208.6 3350.9 2428.9 4212.8 4216.4 TRUE FALSE FALSE 4243.619025 3659.989778 3516.143438 4085.911093 3216.155347 4128.327967 3480.145335 2705.396158 4039.146601 4191.320665 1.012477776 0.873230676 0.838910625 0.974850511 0.767336981 0.98497068 0.830321899 0.645475824 0.963693051 1 12.03318919 -2.333501407 0.248267805 1.019448669 6.34E-15 0.479562665 0.082264537 14.06485892 0.312563601 0.047552408 5.262017481 0.004639793 2.333501407 -1.019448669 SEDIY(ph)ADPAAYVMR ddPTM_HeLa_CUDC101_4h_R1 2 SEDIYADPAAYVMR 14 0 Q5VTI5;A0A1B0GUN5;Q9Y2H5 Q5VTI5 PLEKHA6 Pleckstrin homology domain-containing family A member 6 1 0 S(0.003)EDIY(0.995)ADPAAY(0.003)VMR;SEDIY(1)ADPAAYVMR ; 152.69 0.00094528 4390100 2589.5 2038.53 1951.54 2205 2726.4 2136.5 1737.62 1675.3 2282.5 2450.1 TRUE FALSE FALSE 2285.962735 2101.334693 2057.046155 2294.929431 2525.278904 2095.749822 1804.640585 1866.00938 2188.414384 2435.526696 0.938590712 0.862784504 0.844600126 0.942272337 1.036851252 0.860491419 0.740965225 0.766162565 0.898538451 1 11.25001808 -2.330971998 0.315979341 0.97485504 5.15E-35 0.393247537 0.069689807 13.86073887 0.377831616 0.0255837 6.704002642 0.004666895 2.330971998 -0.97485504 VTVPTSGNTIES(ph)PLHENISNSTSFKDEK ddPTM_HeLa_CUDC101_4h_R1 1 VTVPTSGNTIESPLHENISNSTSFKDEK 28 1 Q8N302;A0A2R8YFF1 Q8N302 AGGF1 Angiogenic factor with G patch and FHA domains 1 1 0 VTVPT(0.004)S(0.011)GNT(0.008)IES(0.976)PLHENISNSTSFKDEK 81.726 7.55E-07 13478000 1388.6 879.12 834.96 866.08 1488.9 1427 1174.2 1426.1 1070.4 1377.1 TRUE FALSE FALSE 1225.830413 906.2046452 880.1004632 901.4024859 1379.066813 1399.782353 1219.489287 1588.44146 1026.277659 1368.908948 0.895479875 0.661990446 0.642921112 0.658482427 1.00742041 1.022553293 0.890847627 1.160370426 0.749704836 1 10.41881077 -2.330492549 14.76987437 0.908384532 1.1372592 0 0.177205573 0 0 0.023957103 0 0.00467205 2.330492549 0.228874668 SS(ph)PNPFITGLTR ddPTM_HeLa_CUDC101_4h_R1 1 SSPNPFITGLTR 12 0 A0A0D9SGJ6;J3KQV8;O43426 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 S(0.04)S(0.96)PNPFITGLTR 89.663 0.021938 24346000 1937.8 1544.5 1423.7 1644 1880.7 1385.6 1389.1 1224.5 1750 1950.2 TRUE FALSE FALSE 1710.654022 1592.084214 1500.669528 1711.049426 1741.964508 1359.171989 1442.678052 1363.89213 1677.864259 1938.600124 0.882417163 0.821254572 0.774099573 0.882621127 0.898568243 0.701110029 0.744185474 0.703544849 0.865503019 1 10.92079953 -2.323305896 0.067363957 1.274923377 1.67E-11 0.483167909 0.065683525 68.56566479 0.448161736 1.92530509 8.905807305 0.004750005 2.323305896 -1.274923377 EDSGSSS(ph)PPGVFLEK ddPTM_HeLa_CUDC101_4h_R1 1 EDSGSSSPPGVFLEK 15 0 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 0 EDSGSS(0.032)S(0.968)PPGVFLEK 121.13 0.00090466 13730000 3438.1 2948.3 2652.9 3189.9 2574.6 2888.1 2307.6 2142.3 2755.6 3223.2 TRUE FALSE FALSE 3035.09113 3039.133628 2796.323799 3319.99791 2384.676887 2833.014304 2396.604905 2386.170773 2642.013002 3204.028263 0.94727352 0.948535212 0.872752538 1.036194951 0.74427461 0.884203906 0.74799743 0.744740863 0.824591041 1 11.64567116 -2.32065488 0.254726733 0.998034345 2.70E-05 0.338625186 0.083355784 10.49203536 0.237188365 0.032419045 3.971809147 0.004779089 2.32065488 -0.998007314 TPAPEPEPCEASELPAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 TPAPEPEPCEASELPAKR 18 1 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 0 1 ; TPAPEPEPCEASELPAK(1)R;TPAPEPEPCEASELPAK(1)R 279.65 1.15E-77 4101500 111.46 0 315.3 129.43 121.14 59.027 108.67 210.927 202.103 137.63 FALSE TRUE FALSE 98.39482776 0 332.3460717 134.7087148 112.2037435 57.90115832 112.8614383 234.9380771 193.7722288 136.8113706 0.719200658 0 2.429228435 0.984630987 0.820134635 0.423218904 0.824941946 1.71724087 1.416345936 1 7.09604433 -4.258834601 23.73985208 0.884154814 1.717241492 0.112305294 0.610164058 169.9806325 1548999.005 0.076456817 0.692522889 5.51E-05 4.258834601 0.833086678 S(ph)PLTQEQLIPNLAMK ddPTM_HeLa_CUDC101_4h_R1 2 SPLTQEQLIPNLAMK 15 0 Q9UNE7;H3BTA3;Q9UNE7-2 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 0 S(1)PLTQEQLIPNLAMK;S(0.999)PLT(0.001)QEQLIPNLAMK ; 164.8 2.84E-05 38359000 4665.4 4245.36 3761.33 4213.62 4182.92 4051.8 3665.9 3037.68 4069.7 4434.39 TRUE FALSE FALSE 4118.528884 4376.15451 3964.678877 4385.469636 3874.354325 3974.518666 3807.294991 3383.477212 3901.945243 4408.014051 0.934327531 0.992772359 0.89942519 0.994885585 0.878934205 0.90165744 0.863721156 0.767574053 0.885193468 1 12.10591311 -2.277386771 0.361803118 0.975814914 5.49E-15 0.589945416 0.043855307 7.888477512 0.230845282 0.009610269 4.576079933 0.005279748 2.277386771 -0.975814914 TPAQFDADELR ddPTM_HeLa_CUDC101_4h_R1 2 TPAQFDADELR 11 0 P04083;Q5T3N1 P04083 ANXA1 Annexin A1;Annexin 0 0 ; ; 166.29 0.00017507 109386000 2799.1 2405.9 2088 2443.1 2567.8 2040 2438.6 2455.9 2399.6 2080.42 FALSE FALSE TRUE 2470.993741 2480.022927 2200.883596 2542.740178 2378.37851 2001.090399 2532.657619 2735.469729 2300.687472 2068.045569 1.194844919 1.199210967 1.064233607 1.22953779 1.150060978 0.967623939 1.224662385 1.322731844 1.112493606 1 11.01405226 -9.311527517 0.906414272 0.994178284 1.165018758 0.136542836 0.097711656 0.625239109 0.870609734 0.073871701 0.017233974 4.88E-10 9.311527517 0.170840474 ADADPSPT(ph)SPPTAR ddPTM_HeLa_CUDC101_4h_R1 1 ADADPSPTSPPTAR 14 0 Q9NWZ5;Q9NWZ5-3;Q9NWZ5-2 Q9NWZ5 UCKL1 Uridine-cytidine kinase-like 1 1 0 ADADPS(0.017)PT(0.966)S(0.016)PPT(0.001)AR 169.17 2.64E-06 66415000 4975.5 4514.8 3954.5 4337.8 4135 4393.6 3581.1 3104 4597.1 4711.8 TRUE FALSE FALSE 4392.279432 4653.895637 4168.292232 4514.714234 3829.969288 4309.7994 3719.224227 3457.346813 4407.605592 4683.774004 0.937765022 0.993620878 0.889943073 0.963905225 0.817710095 0.920155284 0.794065688 0.738154063 0.941037204 1 12.19345575 -2.27334931 0.292505949 0.985552803 1.08E-18 0.729304474 0.043732611 7.620937197 0.189433107 0.016058448 3.405578386 0.005329061 2.27334931 -0.985552803 VGS(ph)PLTLTDAQTR ddPTM_HeLa_CUDC101_4h_R1 2 VGSPLTLTDAQTR 13 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 0 VGS(0.942)PLT(0.024)LT(0.034)DAQTR;VGS(1)PLTLTDAQTR ; 188.63 3.24E-11 127854000 2445.2 2297.2 1954.78 2013.11 2359.96 1956.59 1930.87 1464.55 2634.6 2373.3 TRUE FALSE FALSE 2158.577363 2367.974009 2060.46132 2095.213327 2185.870453 1919.271306 2005.344303 1631.268452 2526.000673 2359.183506 0.914967978 1.003726079 0.873378995 0.888109518 0.926536849 0.813532013 0.850016244 0.69145467 1.070709704 1 11.20407193 -2.270102594 0.287353737 0.976756093 8.70E-20 0.742638992 0.051993528 8.337981581 0.203959256 0.018112346 3.612307571 0.005369049 2.270102594 -0.976756093 EQFEGLGS(ph)TPDAK ddPTM_HeLa_CUDC101_4h_R1 1 EQFEGLGSTPDAK 13 0 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 0 EQFEGLGS(0.5)T(0.5)PDAK 162.64 4.20E-05 25211000 5820.4 4376.9 3998.7 4280.6 4432.1 4582.5 4314.1 7320.2 5372.8 5073.2 TRUE FALSE FALSE 5138.141535 4511.747101 4214.881817 4455.18137 4105.152813 4495.096447 4480.496282 8153.501979 5151.33091 5043.024381 1.018861133 0.894651059 0.835784541 0.88343443 0.81402597 0.891349339 0.888454218 1.616788134 1.021476503 1 12.30007348 -2.268906341 13.56079419 0.984697578 1.149989176 0 0.221344899 0 0 0.026846294 0 0.005383859 2.268906341 0.165291597 SSGS(ph)PYGGGYGS(ph)GGGSGGYGSR ddPTM_HeLa_CUDC101_4h_R1 2 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;P51991-2;H7C1J8 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 2 0 S(0.006)S(0.007)GS(0.986)PY(0.001)GGGYGS(0.936)GGGS(0.063)GGYGSR;S(0.003)S(0.004)GS(0.992)PYGGGYGS(0.877)GGGS(0.123)GGYGSR ; 132.66 2.85E-06 14998100 4524.5 4058 3460.9 3968.9 4140.6 3598.2 3320.5 2476.65 5007.9 4623.3 TRUE FALSE FALSE 3994.144969 4183.02217 3648.006723 4130.768897 3835.156187 3529.57033 3448.572797 2758.581825 4801.472242 4595.800406 0.869085821 0.910183603 0.793769616 0.898813815 0.834491459 0.767999047 0.750374797 0.600239693 1.044752125 1 12.16610043 -2.261265932 0.18090165 1.002043918 1.96E-21 0.831009795 0.050202398 10.93207613 0.178304401 0.065056504 2.771551864 0.005479413 2.261265932 -1.002043918 GNIETT(ph)SEDGQVFSPK ddPTM_HeLa_CUDC101_4h_R1 1 GNIETTSEDGQVFSPK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 GNIET(0.011)T(0.702)S(0.287)EDGQVFSPK 177.66 1.06E-06 35991000 2745 2307.5 3005.4 2993.2 3364.5 3326.6 3822.8 4389.2 2633.2 2885.6 TRUE FALSE FALSE 2423.235261 2378.59134 3167.881015 3115.275634 3116.307538 3263.150647 3970.246677 4888.848786 2524.658381 2868.436323 0.844793117 0.829229264 1.104393007 1.086053614 1.086413358 1.137606096 1.384115326 1.704360228 0.880151447 1 11.48604878 -2.254271967 0.494529143 0.924852215 7.423070819 0.909971057 0.076157889 5.940005823 0.200821317 0.018184816 34.56928895 0.005568369 2.254271967 6.498218604 SSYLES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 SSYLESPR 8 0 H0YIQ2;P49750-3;P49750-1;P49750;F8VU51 H0YIQ2 YLPM1 YLP motif-containing protein 1 1 0 SSYLES(1)PR;SSYLES(1)PR;SS(0.013)Y(0.002)LES(0.985)PR ;; 120.31 0.0074035 41660600 9167.6 7474.1 7055.5 7439.6 7722.4 7209.2 6839.2 4780.9 7563.9 8778.7 TRUE FALSE FALSE 8092.987825 7704.368162 7436.941672 7743.019045 7152.733937 7071.696521 7102.990235 5325.138331 7252.11284 8726.483902 0.927405346 0.882871985 0.852226596 0.887301132 0.819658183 0.810371806 0.813957868 0.610227257 0.831046378 1 13.09118476 -2.248904435 0.198665065 1.010431725 1.65E-13 0.564717788 0.063346201 7.937037819 0.140188616 0.039411659 2.26599833 0.005637617 2.248904435 -1.010431725 NYTNS(ph)PEESSK ddPTM_HeLa_CUDC101_4h_R1 2 NYTNSPEESSK 11 0 J3QQU0;A0A3B3ITH3;Q9P2X3-2;Q9P2X3 J3QQU0 IMPACT Protein IMPACT 1 0 NYT(0.001)NS(0.955)PEES(0.043)S(0.002)K;NYT(0.004)NS(0.994)PEESS(0.002)K ; 165.78 3.93E-05 58707000 10401.2 10062.1 11025.1 10646.6 11360.4 10994.3 9558.9 8496 11852.3 10761.2 TRUE FALSE FALSE 9181.987103 10372.10137 11621.15026 11080.81437 10522.36593 10784.60205 9927.589975 9463.150298 11363.74318 10697.1919 0.858354902 0.969609732 1.086373916 1.035861978 0.983656834 1.008171317 0.928055705 0.884638734 1.062310864 1 13.38494451 -2.245516236 8.565331285 0.955487849 0.614327976 0 0.07480578 0 0 0.010781318 0 0.005681772 2.245516236 -0.341159873 AYS(ph)NSIVR ddPTM_HeLa_CUDC101_4h_R1 1 AYSNSIVR 8 0 Q9H1Z4 Q9H1Z4 WDR13 WD repeat-containing protein 13 1 0 AYS(0.998)NS(0.002)IVR 123.96 0.0067139 41255000 1461.5 1507.9 1231.6 1341.2 1635.3 1173.3 1153 1022.9 1196.5 1537.2 TRUE FALSE FALSE 1290.185185 1554.356612 1298.184021 1395.899933 1514.667177 1150.921257 1197.471596 1139.342801 1147.179764 1528.056666 0.84433072 1.017211368 0.849565366 0.913513199 0.99123757 0.753192786 0.783656538 0.745615543 0.750744255 1 10.57748233 -2.24079219 0.313223225 0.945426114 1.66E-31 0.221669789 0.091161646 16.94061895 0.436953716 0.027817552 7.955407032 0.005743912 2.24079219 -0.945426114 TPEDGDYSYEIIEK ddPTM_HeLa_CUDC101_4h_R1 4 TPEDGDYSYEIIEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 0 0 ;;; ;;; 171.57 2.40E-06 42096700 5854.7 4895.5 5175.9 4380.67 5427.4 5507.5 4909.83 4836.83 5949.1 5466 FALSE FALSE TRUE 5168.420941 5046.324552 5455.72481 4559.332657 5027.031515 5402.453614 5099.203788 5387.435176 5703.87558 5433.487989 0.951216042 0.928744954 1.00409255 0.839117095 0.925194189 0.994288314 0.938477052 0.991524263 1.049763171 1 12.40766291 -8.842751096 0.705382788 1.000429796 0.944396847 0.264205466 0.047807308 0.977253159 0.908711102 0.029622016 0.009711464 1.44E-09 8.842751096 -0.056032949 CSVS(ph)LSNVEAR ddPTM_HeLa_CUDC101_4h_R1 1 CSVSLSNVEAR 11 0 P47712 P47712 PLA2G4A Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase 1 0 CS(0.004)VS(0.984)LS(0.013)NVEAR 88.163 0.027487 11350000 1156.5 852.89 995.72 1028.9 1048.8 1195.9 966.33 1819.9 1342.6 849.26 TRUE FALSE FALSE 1020.936823 879.16653 1049.551635 1070.862989 971.4321135 1173.0902 1003.601672 2027.07006 1287.25746 844.2085638 1.209341941 1.041409159 1.243237371 1.268481552 1.150701563 1.389573916 1.188807736 2.401148421 1.524809763 1 9.721455654 -2.239363009 1.245061954 1.128444196 200 0.790604338 0.174705054 53.66591192 0.673602832 0.019370973 29887.15439 0.005762846 2.239363009 198.8715558 up TPEK(ac)QLLETLK ddPTM_HeLa_CUDC101_4h_R1 1 TPEKQLLETLK 11 1 A0A087WTW5;Q9UKL3 A0A087WTW5 CASP8AP2 CASP8-associated protein 2 0 1 TPEK(1)QLLETLK 118.48 0.0023799 270130 0 0 0 0 0 0 68.304 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 70.93850816 0 0 0 0 AASDPLLSS(ph)VSPAVSK ddPTM_HeLa_CUDC101_4h_R1 1 AASDPLLSSVSPAVSK 16 0 P19532 P19532 TFE3 Transcription factor E3 1 0 AASDPLLS(0.123)S(0.782)VS(0.095)PAVSK 225.37 1.02E-32 81444000 3741.7 3115.1 2702.4 2689 3079.1 2972.5 2702.5 1916 3424.1 3570.3 TRUE FALSE FALSE 3303.103598 3211.072539 2848.499918 2798.669043 2851.960927 2915.804515 2806.73633 2134.109695 3282.957149 3549.063697 0.930697187 0.904766105 0.802606028 0.788565459 0.803581218 0.821570071 0.790838534 0.601316256 0.925020633 1 11.79322275 -2.226978377 0.151650321 1.055604696 1.31E-18 0.762760197 0.05114249 13.03189172 0.179317723 0.109050367 2.860349793 0.005929548 2.226978377 -1.055604696 QVQS(ph)LTCEVDALKGTNESLER ddPTM_HeLa_CUDC101_4h_R1 4 QVQSLTCEVDALKGTNESLER 21 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 QVQS(0.928)LT(0.072)CEVDALKGTNESLER;QVQS(0.823)LT(0.177)CEVDALKGTNESLER;QVQS(0.98)LT(0.02)CEVDALKGTNESLER;QVQS(0.997)LT(0.003)CEVDALKGTNESLER ;;; 82.517 0.00070872 47284000 6275.26 5637.96 5756.43 5090.27 6582.28 6322.45 6384.03 6656.4 6161.5 4126.54 TRUE FALSE FALSE 5539.683535 5811.658865 6067.640018 5297.873213 6096.718318 6201.8598 6630.264176 7414.13767 5907.520362 4101.995157 1.350485148 1.416788329 1.47919239 1.291535707 1.486281208 1.511912999 1.616351049 1.807446715 1.44015781 1 12.00211007 -2.225014141 0.050927 1.03E-12 3.752020101 0.423367372 0.151713037 79.76805096 0.388562237 7.78148466 25.61365158 0.005956427 2.225014141 3.752020101 VDST(ph)TCLFPVEEK ddPTM_HeLa_CUDC101_4h_R1 1 VDSTTCLFPVEEK 13 0 A0A6I8PRN4;A0A6I8PTT9;Q06210-2;Q06210 A0A6I8PRN4 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 1 0 VDS(0.054)T(0.731)T(0.214)CLFPVEEK 253.06 1.55E-55 226700000 4685.3 3635.8 3533.3 3211.3 4835.3 4942.3 5494 6141.9 3587.7 1186.3 TRUE FALSE FALSE 4136.096236 3747.814689 3724.320886 3342.270694 4478.609552 4848.033862 5705.90542 6841.06907 3439.813487 1179.243835 3.507413916 3.178150759 3.15822799 2.834249029 3.797865564 4.111137764 4.838613739 5.801233695 2.91696542 1 10.20364634 -2.224178787 0.106391685 4.28E-27 13.16001889 0.720981165 0.642638659 27.04357891 0.267885827 4.722055614 51.78962253 0.005967896 2.224178787 13.16001889 up RALPFSEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 RALPFSEKK 9 2 A0A1C7CYX1;Q6PJG2 A0A1C7CYX1 ELMSAN1 ELM2 and SANT domain-containing protein 1 0 1 ; RALPFSEK(1)K;RALPFSEK(1)K 112.83 0.0048847 3100300 1419.91 1557.33 1732.02 2025.41 2822.6 3124.5 4892.7 7647.4 1085.33 955.72 FALSE TRUE FALSE 1253.470302 1605.309491 1825.65824 2108.014974 2614.382421 3064.905368 5081.413078 8517.949104 1040.592238 950.0353349 1.319393349 1.689736615 1.92167404 2.2188806 2.751879141 3.226096184 5.34865693 8.96592873 1.095319511 1 9.891837363 -1.118343039 0.484358112 1.162247271 200 0.990004197 0.234773549 5.277350604 0.059456311 0.052328144 1055.982773 0.07614773 1.118343039 198.8377527 up VLSPLRS(ph)PPLIGSESAYESFLSADDKASGR ddPTM_HeLa_CUDC101_4h_R1 4 VLSPLRSPPLIGSESAYESFLSADDKASGR 30 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 VLS(0.039)PLRS(0.932)PPLIGS(0.012)ES(0.012)AY(0.005)ESFLSADDKASGR;VLS(0.001)PLRS(0.578)PPLIGS(0.208)ES(0.208)AY(0.005)ESFLSADDKASGR;VLS(0.004)PLRS(0.402)PPLIGS(0.157)ES(0.402)AY(0.035)ESFLSADDKASGR;VLS(0.182)PLRS(0.807)PPLIGS(0.004)ES(0.004)AY(0.001)ESFLSADDKASGR ;;; 119.29 1.09E-13 230443300 3468.85 3934.99 3462.43 3571.13 5839.53 4129.37 4833.59 5482.25 4416.88 3064.45 TRUE FALSE FALSE 3062.236661 4056.222378 3649.619439 3716.776117 5408.759506 4050.609147 5020.023185 6106.32718 4234.814337 3046.222515 1.005257051 1.331558137 1.198080383 1.220126271 1.775562842 1.329715452 1.64795026 2.004557169 1.390185489 1 11.57280561 -2.222547972 0.246770083 0.935659858 4.603033423 0.565064954 0.204947748 8.169947119 0.172403692 0.090732651 11.04405908 0.005990348 2.222547972 3.667373565 ERDSASFNPELLTHILDGS(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 1 ERDSASFNPELLTHILDGSPEK 22 1 K7ELT1;I3L0T4;Q15067-2;Q15067;I3L2U4 K7ELT1 ACOX1 Peroxisomal acyl-coenzyme A oxidase 1 1 0 ERDSASFNPELLTHILDGS(1)PEK 77.169 0.00081617 2740900 2710.5 2230.8 1846.7 2089.9 2503.5 2088.3 1674.3 1614.3 2509.1 2634.8 TRUE FALSE FALSE 2392.779299 2299.528304 1946.538188 2175.135155 2318.821793 2048.469157 1738.878312 1798.065387 2405.673836 2619.128092 0.913578571 0.877974739 0.743200836 0.830480633 0.885341118 0.782118737 0.663914956 0.686512963 0.918501788 1 11.3548709 -2.214469862 0.135730943 1.07152796 8.29E-13 0.710660181 0.055662351 17.40664999 0.215680999 0.17531237 3.447040926 0.006102814 2.214469862 -1.07152796 HARPPDPPASAPPDSSSNSAS(ph)QDTK ddPTM_HeLa_CUDC101_4h_R1 1 HARPPDPPASAPPDSSSNSASQDTK 25 1 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 HARPPDPPASAPPDS(0.017)S(0.017)S(0.017)NS(0.417)AS(0.506)QDT(0.024)K 56.72 0.0034969 3386500 1731.8 1156.5 1491.1 1442.2 1441.5 1336.7 1716.5 1941.9 1676.3 1837 TRUE FALSE FALSE 1528.801029 1192.130394 1571.713376 1501.01915 1335.163417 1311.204675 1782.70598 2162.958047 1607.202204 1826.073442 0.837206759 0.652838143 0.860706552 0.821992761 0.73116633 0.718045969 0.976250976 1.184485791 0.880141054 1 10.83452907 -2.213772665 14.15792986 0.885424718 0.853264525 0 0.149569292 0 0 0.021067829 0 0.006112619 2.213772665 -0.032160194 S(ph)FEVEEVETPNST(ph)PPRR ddPTM_HeLa_CUDC101_4h_R1 1 SFEVEEVETPNSTPPRR 17 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 2 0 S(1)FEVEEVET(0.001)PNS(0.213)T(0.786)PPRR 119.41 0.0003501 7487600 1453 1341.1 1543 1110.5 1360.1 1261.1 1159.8 852.01 1501.8 1546.3 TRUE FALSE FALSE 1282.681543 1382.417701 1626.419247 1155.79099 1259.768133 1237.046619 1204.533875 948.9993745 1439.895168 1537.102539 0.834480141 0.899365961 1.058107189 0.751928359 0.819573256 0.804791214 0.783639246 0.617394969 0.936759346 1 10.58599769 -2.213044541 0.223573972 0.964021335 2.64E-26 0.594546018 0.077230127 17.95432768 0.34705661 0.064684891 5.654990492 0.006122876 2.213044541 -0.964021335 TPGPPGLTTTPAPPDK(ac)LGGK(ac)QR ddPTM_HeLa_CUDC101_4h_R1 1 TPGPPGLTTTPAPPDKLGGKQR 22 2 A0A1W2PQJ7;Q7Z5J4-3;Q7Z5J4-2;Q7Z5J4 A0A1W2PQJ7 RAI1 Retinoic acid-induced protein 1 0 2 TPGPPGLTTTPAPPDK(1)LGGK(1)QR 133.96 2.61E-05 1411800 0 0 137.75 0 59.279 0 0 0 0 0 FALSE TRUE FALSE 0 0 145.1971817 0 54.90610627 0 0 0 0 0 0 SPATY(ph)GHSQKKHKCS(ph)VY(ph)YSK ddPTM_HeLa_CUDC101_4h_R1 1 SPATYGHSQKKHKCSVYYSK 20 3 H0Y2M0;A2VDJ0-2;A2VDJ0-6;A2VDJ0-3;A2VDJ0;A2VDJ0-5 H0Y2M0 KIAA0922 Transmembrane protein 131-like 3 0 S(0.164)PAT(0.165)Y(0.664)GHS(0.065)QKKHKCS(0.859)VY(0.659)Y(0.187)S(0.236)K 40.349 0.031391 7925400 1191 1005.4 868.54 704.68 889.44 1067.2 1018.9 1132 963.72 968.56 TRUE FALSE FALSE 1051.392785 1036.375182 915.4958996 733.4198963 823.8277832 1046.844938 1058.199314 1260.862304 923.9950537 962.798962 1.092016949 1.07641909 0.950869222 0.761758088 0.855659193 1.08729338 1.099086472 1.309580041 0.95969677 1 9.911090776 -2.207923345 10.77196573 1.029834195 1.08517643 0 0.143749281 0 0 0.019361733 0 0.006195504 2.207923345 0.055342235 ADEGIS(ph)FR ddPTM_HeLa_CUDC101_4h_R1 2 ADEGISFR 8 0 Q06830;A0A0A0MSI0 Q06830 PRDX1 Peroxiredoxin-1 1 0 ADEGIS(1)FR;ADEGIS(1)FR ; 95.483 0.022979 42689000 7250.5 6772.2 5934.2 5858.5 6442.5 6015.3 5262 4486.7 7153.9 6973.1 TRUE FALSE FALSE 6400.607381 6980.843455 6255.020802 6097.434953 5967.24961 5900.568175 5464.957103 4997.447792 6859.013214 6931.623691 0.923392219 1.007100755 0.902388976 0.879654641 0.860873278 0.851253391 0.788409375 0.720963517 0.989524752 1 12.75897762 -2.20575106 0.255992176 0.988343941 1.67E-11 0.903666297 0.027461141 6.165666142 0.133184495 0.016686079 2.355515694 0.006226571 2.20575106 -0.988343941 APVPSTCSSTFPEELS(ph)PPSHQAK ddPTM_HeLa_CUDC101_4h_R1 2 APVPSTCSSTFPEELSPPSHQAK 23 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;Q14980-4;Q14980-3;F5H6Y5;F5H4J1;F5H0Z7;F5H763 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 APVPSTCSSTFPEELS(0.988)PPS(0.011)HQAK;APVPSTCSSTFPEELS(0.999)PPS(0.001)HQAK ; 113.13 3.66E-06 617020000 5326.44 4473.06 4312.99 4709.01 4972.39 4350.03 4229.5 3406.8 5685.26 4972.83 TRUE FALSE FALSE 4702.082778 4610.869677 4546.163285 4901.063782 4605.586696 4267.060425 4392.633232 3794.616341 5450.911176 4943.251386 0.951212554 0.932760509 0.919670664 0.991465616 0.931691783 0.863209271 0.888612148 0.767635721 1.102697547 1 12.27124456 -2.203008729 0.35237924 0.980639617 4.20E-15 0.668800614 0.048617277 7.610819522 0.208896278 0.009036416 4.335987773 0.006266013 2.203008729 -0.980639617 SGSGSVGNGSSRYSPS(ph)QNS(ph)PIHHIPSR ddPTM_HeLa_CUDC101_4h_R1 1 SGSGSVGNGSSRYSPSQNSPIHHIPSR 27 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;E9PJA7;H0YF00;Q9NYF8-2;Q9NYF8;Q9NYF8-4 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 S(0.002)GS(0.002)GS(0.006)VGNGS(0.075)S(0.075)RY(0.153)S(0.168)PS(0.759)QNS(0.759)PIHHIPS(0.001)R 51.938 0.013775 43458000 519.17 356.02 497.89 404.11 383.89 419.77 453.28 238.04 561.25 485.98 TRUE FALSE FALSE 458.3136796 366.9885542 524.8074394 420.5913525 355.5711995 411.7635866 470.7631614 265.1375114 538.1150374 483.0893693 0.948714066 0.75967011 1.086356837 0.870628458 0.736036067 0.852354891 0.974484622 0.548837396 1.113903703 1 8.916146296 -2.194731146 0.236389984 0.997443947 5.21E-13 0.401555968 0.127170761 23.27211795 0.468289961 0.075503859 8.136119664 0.006386587 2.194731146 -0.997443947 TPIFWPGVMQSPPWR ddPTM_HeLa_CUDC101_4h_R1 1 TPIFWPGVMQSPPWR 15 0 P78426 P78426 NKX6-1 Homeobox protein Nkx-6.1 0 0 40.941 0.036237 1703400 1204.9 603.41 323.53 282.24 376.14 284.95 278.8 781.84 400.02 132.1 FALSE FALSE TRUE 1063.663449 622.0003469 341.0210104 293.7509671 348.3929016 279.5150535 289.5534094 870.8415053 383.5310063 131.3142633 8.100136433 4.736731038 2.596983768 2.237007311 2.653123071 2.128596288 2.20504157 6.631735832 2.920710946 1 7.03687982 -6.763201138 24.6916898 4.475316269 2.935510495 0.055366088 2.079214009 96.42138241 1351390.773 0.461346701 0.62417432 1.73E-07 6.763201138 -1.539805775 SADEADELPPDLPKPPSPAPSS(ph)EDPGLAQPR ddPTM_HeLa_CUDC101_4h_R1 2 SADEADELPPDLPKPPSPAPSSEDPGLAQPR 31 1 Q8TBE0-3;Q8TBE0-2;Q8TBE0 Q8TBE0-3 BAHD1 Bromo adjacent homology domain-containing 1 protein 1 0 SADEADELPPDLPKPPS(0.203)PAPS(0.153)S(0.644)EDPGLAQPR;SADEADELPPDLPKPPS(0.112)PAPS(0.192)S(0.696)EDPGLAQPR ; 92.499 2.10E-08 40617000 5642.3 5153.2 4911.7 5400.4 6151.4 5185.7 4294.4 4508.3 5418.4 4904.9 TRUE FALSE FALSE 4980.918147 5311.963984 5177.241359 5620.651655 5697.623477 5086.791412 4460.036447 5021.506649 5195.051259 4875.725437 1.021574781 1.089471516 1.061840218 1.152782643 1.168569385 1.043289143 0.91474315 1.029899389 1.065492987 1 12.25140117 -2.189072769 13.48386853 1.034387945 0.693373792 0 0.072483293 0 0 0.010408504 0 0.006470342 2.189072769 -0.341014153 QVEQSRS(ph)QVQAIGEK ddPTM_HeLa_CUDC101_4h_R1 1 QVEQSRSQVQAIGEK 15 1 Q9NQA3 Q9NQA3 WASH6P WAS protein family homolog 6 1 0 QVEQS(0.09)RS(0.91)QVQAIGEK 61.226 0.035688 39169000 4163.6 2954.6 3190.5 3506.6 2895.6 3232.9 2966.5 2212.2 3442.1 3805.4 TRUE FALSE FALSE 3675.54912 3045.627724 3362.988081 3649.614305 2681.997357 3171.237819 3080.918899 2464.027906 3300.215181 3782.765312 0.971656663 0.805132614 0.889029005 0.964800617 0.709004428 0.838338506 0.814462079 0.651382706 0.872434558 1 11.88522556 -2.172719685 0.180577367 1.038292786 8.36E-10 0.429070113 0.081106549 15.8782661 0.2513137 0.092279992 4.18692786 0.006718624 2.172719685 -1.038292785 ILEGPQQSLSGS(ph)PLQPIPAS(ph)PPPQIPPGLRPR ddPTM_HeLa_CUDC101_4h_R1 1 ILEGPQQSLSGSPLQPIPASPPPQIPPGLRPR 32 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 2 0 ILEGPQQS(0.003)LS(0.027)GS(0.97)PLQPIPAS(0.999)PPPQIPPGLRPR 89.186 4.72E-08 17044000 563.63 470.47 452.64 535.17 386.87 456 394.14 341.84 542.73 576.17 TRUE FALSE FALSE 497.5621458 484.9646231 477.1110876 556.9965458 358.3313709 447.3025597 409.3421118 380.7536838 520.3584397 572.7429152 0.868735575 0.846740501 0.833028353 0.97250709 0.625640861 0.780983139 0.714704802 0.664789862 0.908537541 1 9.161743897 -2.170027744 0.115542486 1.094078548 5.14E-14 0.580629263 0.076953495 30.89038079 0.326172915 0.391971536 5.316176227 0.006760398 2.170027744 -1.094078548 FVTPVPGPQGK(ac)EGK ddPTM_HeLa_CUDC101_4h_R1 2 FVTPVPGPQGKEGK 14 1 O15014;E7ERY8;O15014-2 O15014 ZNF609 Zinc finger protein 609 0 1 ; FVTPVPGPQGK(1)EGK;FVTPVPGPQGK(1)EGK 194.06 9.31E-15 2231500 1824.36 1877.76 2144 2151.98 2425.86 2271.95 2186.24 2753.9 1185.28 1289.49 FALSE TRUE FALSE 1610.511286 1935.61156 2259.911125 2239.747046 2246.909141 2228.616339 2270.564009 3067.392844 1136.422257 1281.820056 1.256425407 1.510049364 1.763048654 1.747317836 1.752905277 1.738634318 1.771359403 2.392998011 0.886569259 1 10.32397803 -1.000000007 0.112071092 0.592065573 5.487539724 0.874604118 0.147752477 25.47313962 0.199293247 0.859941039 19.40175214 0.099999998 1.000000007 4.895474152 TPLAVELEVLDGHDPDPGR ddPTM_HeLa_CUDC101_4h_R1 2 TPLAVELEVLDGHDPDPGR 19 0 G3V4F2;A0A087X0W7;A0A087WT95;Q86TX2;P49753 G3V4F2 ACOT1;ACOT2 "Acyl-coenzyme A thioesterase 1;Acyl-coenzyme A thioesterase 2, mitochondrial" 0 0 ; ; 142.72 2.06E-07 0 1406.97 998.96 903.52 1123.96 1204.65 1335.24 830.86 899.27 768.41 1231.28 FALSE FALSE TRUE 1242.047109 1029.736774 952.3670242 1169.799947 1115.78537 1309.772522 862.9065485 1001.639262 736.7358146 1223.956292 1.014780608 0.841318257 0.77810542 0.95575304 0.911621908 1.070113803 0.705014186 0.818361953 0.60192984 1 10.25733632 -1.000000009 0.156360383 1.04333323 0.125884843 0 0.164462273 62.4189297 0.622263981 0.200268975 13.17570465 0.099999998 1.000000009 -0.917448387 TAPPALPT(ph)GYDSEEEEESRPMSYDEK ddPTM_HeLa_CUDC101_4h_R1 1 TAPPALPTGYDSEEEEESRPMSYDEK 26 1 P25440-2;P25440;A0A0G2JK44;A0A140T9E9;H0Y6K2;P25440-3;P25440-4;A0A0G2JHN8;A0A140T9I1 P25440-2 BRD2 Bromodomain-containing protein 2 1 0 TAPPALPT(0.461)GY(0.39)DS(0.141)EEEEES(0.004)RPMS(0.001)Y(0.002)DEK 51.044 0.020958 42147000 1663.7 1435.6 1767.6 1334.7 1407.7 1430.7 1177.3 1135.9 1509.7 1802.7 TRUE FALSE FALSE 1468.683608 1479.829134 1863.161803 1389.134835 1303.856776 1403.411781 1222.708855 1265.206265 1447.469527 1791.97746 0.819588215 0.825807895 1.039723905 0.7751966 0.727607799 0.783163746 0.682323792 0.706039162 0.807749851 1 10.80733678 -2.167473732 0.071694603 1.222819109 6.58E-11 0.31824328 0.092165662 95.76194079 0.643097323 2.309394946 12.339822 0.006800272 2.167473732 -1.222819108 GNIETTSEDGQVFS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 GNIETTSEDGQVFSPK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 GNIETTSEDGQVFS(1)PK;GNIETTSEDGQVFS(1)PK;GNIETTSEDGQVFS(1)PK ;; 219.72 2.08E-32 335199600 11562.34 10645.94 9547.81 9245.48 10513.24 9069.59 8531.49 7001.12 10987.47 11258.54 TRUE FALSE FALSE 10207.02003 10973.92879 10063.99349 9622.550637 9737.699231 8896.602682 8860.552427 7798.099201 10534.56184 11191.5737 0.912027236 0.980552788 0.899247394 0.859803178 0.870092043 0.794937595 0.791716399 0.696783081 0.941294059 1 13.45012529 -2.160749895 0.228161057 0.992074444 1.33E-12 0.896247837 0.028535274 6.169549366 0.118901563 0.020910307 2.060449665 0.006906374 2.160749895 -0.992074444 TPLHEIALSIK ddPTM_HeLa_CUDC101_4h_R1 1 TPLHEIALSIK 11 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 73.9 0.036842 585220 1400.8 882.73 471.9 871.72 889.71 1074.7 734.12 679.2 740 617.27 FALSE FALSE TRUE 1236.600347 909.925865 497.4123414 907.2725095 824.0778659 1054.201888 762.4352543 756.5173826 709.4968868 613.5984506 2.015325082 1.482933772 0.810647975 1.478609518 1.343024685 1.718064782 1.242563852 1.232919317 1.156288589 1 9.26115103 -6.952259361 24.9983613 1.493654607 1.314722534 0.002334082 0.329542943 361.330277 189201.8701 0.069340342 0.091131051 1.12E-07 6.952259361 -0.178932073 TPLSEAEFEEIMNR ddPTM_HeLa_CUDC101_4h_R1 3 TPLSEAEFEEIMNR 14 0 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 0 0 ;; ;; 183.99 1.70E-16 3342500 1853.07 1737.85 1625.37 1820.42 2007.31 1495.96 1886.6 1434.9 2055.32 2191.48 FALSE FALSE TRUE 1635.855944 1791.391099 1713.242419 1894.664596 1859.23474 1467.427055 1959.366794 1598.243216 1970.59884 2178.444979 0.750928281 0.822325611 0.786452004 0.869732591 0.853468762 0.673612173 0.899433684 0.73366242 0.904589677 1 11.08908296 -9.360624524 0.967533952 1.005926989 0.798807186 0.412665324 0.069970111 0.318747924 0.50930802 0.047813867 0.011091576 4.36E-10 9.360624524 -0.207119803 GFSVVADT(ph)PELQR ddPTM_HeLa_CUDC101_4h_R1 3 GFSVVADTPELQR 13 0 C9J9W2;Q14847;Q14847-2;Q14847-3 C9J9W2 LASP1 LIM and SH3 domain protein 1 1 0 GFS(0.006)VVADT(0.994)PELQR;GFS(0.162)VVADT(0.838)PELQR;GFSVVADT(1)PELQR ;; 163.33 0.00017842 917400000 12442.1 9756.2 9354.6 9277.6 10264.6 8865.9 9841.8 6117.1 11263.3 11507.7 TRUE FALSE FALSE 10983.6559 10056.77696 9860.337972 9655.980629 9507.400908 8696.797729 10221.40152 6813.445938 10799.02201 11439.25169 0.960172588 0.879146402 0.861974038 0.844109466 0.831120878 0.760259322 0.893537602 0.595619899 0.944032206 1 13.48170506 -2.159469831 0.180300668 1.034849567 7.80E-15 0.669107675 0.062759042 13.26655272 0.208805532 0.076354391 3.483495135 0.00692676 2.159469831 -1.034849567 TPLVSVLLEGPPHSGK ddPTM_HeLa_CUDC101_4h_R1 1 TPLVSVLLEGPPHSGK 16 0 I3L0N3;P46459;P46459-2 I3L0N3 NSF Vesicle-fusing ATPase 0 0 76.391 0.025634 341770 0 0 0 0 0 0 0 0 0 122.46 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 121.7316025 0 0 0 0 0 0 0 0 0 1 6.927559941 -9.157829429 0.677150941 1.083625666 2.50E-23 0 0.307667284 0.066591669 0.049088893 0.041658111 0.0090835 6.95E-10 9.157829429 -1.083625666 EAEEGPTGASESQDS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 EAEEGPTGASESQDSPR 17 0 H0Y507;Q5TCZ1-2;Q5TCZ1-3;Q5TCZ1 H0Y507 SH3PXD2A SH3 and PX domain-containing protein 2A 1 0 EAEEGPTGASESQDS(1)PR;EAEEGPTGASESQDS(1)PR ; 231.38 2.68E-43 36062000 1904.91 2004.4 1952.79 2049.48 2150.11 1955.47 1638.36 1833.93 2077.29 2069.07 TRUE FALSE FALSE 1681.619337 2066.153188 2058.363734 2133.066653 1991.500669 1918.172668 1701.552094 2042.697178 1991.663227 2056.76308 0.817604786 1.004565479 1.00077824 1.037098864 0.968269359 0.932617221 0.82729611 0.993161146 0.968348395 1 11.0061599 -2.154015407 18.2306773 0.934044854 1.308710051 0 0.074293419 0 0 0.011822244 0 0.007014304 2.154015407 0.374665197 ALAAGADS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 ALAAGADSPK 10 0 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 ALAAGADS(1)PK;ALAAGADS(1)PK;ALAAGADS(1)PK ;; 117.86 0.0054258 247100000 15896.1 13273.8 14215.4 14216.9 11468.2 13384.3 11765.6 9035.4 13549.7 16569.5 TRUE FALSE FALSE 14032.78325 13682.75004 14983.92752 14796.72663 10622.21373 13129.01678 12219.40313 10063.95341 12991.17563 16470.94388 0.851972016 0.830720458 0.909718814 0.898353291 0.644906194 0.797101664 0.741876314 0.61101255 0.788732918 1 14.00763561 -2.124162932 0.121302386 1.0732319 6.66E-17 0.387527037 0.088571916 27.73812868 0.302852295 0.315059576 4.914684525 0.00751341 2.124162932 -1.0732319 TPNLYIYSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TPNLYIYSKK 10 1 Q8IYH5-2;Q8IYH5;Q8IYH5-3 Q8IYH5-2 ZZZ3 ZZ-type zinc finger-containing protein 3 0 1 ; TPNLYIYSK(1)K;TPNLYIYSK(1)K 121.08 0.00038286 668360 248.68 341.57 292.89 540.35 373.57 349.88 302.897 593.83 76.951 83.117 FALSE TRUE FALSE 219.5301074 352.0933668 308.7245193 562.3878086 346.0124854 343.2066219 314.5798388 661.4292069 73.77904721 82.62261639 2.657021975 4.261464745 3.736561886 6.806705394 4.187866476 4.153906484 3.807430126 8.005425582 0.892964305 1 6.368464841 -7.431909935 0.533340846 1.110129633 5.412623726 0.637913251 1.270619525 0.354965045 0.239388475 0.482900336 0.495486808 3.70E-08 7.431909935 4.302494093 S(ph)PISDNSGCDAPGNSNPSLSVPSSAESEK ddPTM_HeLa_CUDC101_4h_R1 4 SPISDNSGCDAPGNSNPSLSVPSSAESEK 29 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 0 S(0.961)PIS(0.039)DNSGCDAPGNSNPSLSVPSSAESEK;S(0.759)PIS(0.205)DNS(0.019)GCDAPGNS(0.015)NPS(0.002)LSVPSSAESEK;S(0.91)PIS(0.087)DNS(0.003)GCDAPGNSNPSLSVPSSAESEK;S(0.882)PIS(0.092)DNS(0.024)GCDAPGNS(0.002)NPSLSVPSSAESEK ;;; 118.5 1.31E-13 91220300 8893.5 7832.2 7462.2 7283.7 8070.3 7653.4 6591.3 5754.65 8858.4 8327.4 TRUE FALSE FALSE 7851.017412 8073.500799 7865.629104 7580.760769 7474.970047 7507.424146 6845.528649 6409.736095 8493.253003 8277.868254 0.94843469 0.975311584 0.950199842 0.915786593 0.903006646 0.906927232 0.826967576 0.774322072 1.02601935 1 13.01504357 -2.114231881 0.309305502 0.986151769 1.08E-22 0.922378002 0.02022577 4.439699105 0.106037427 0.006756444 2.176296266 0.007687199 2.114231881 -0.986151769 TPPEPSAK(ac)QR ddPTM_HeLa_CUDC101_4h_R1 2 TPPEPSAKQR 10 1 X6R7H2;Q5VV67-2;Q5VV67 X6R7H2 PPRC1 Peroxisome proliferator-activated receptor gamma coactivator-related protein 1 0 1 ; TPPEPSAK(1)QR;TPPEPSAK(1)QR 109.29 0.0061339 1860720 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 LVS(ph)PETEASEESLQFNLEKPATGER ddPTM_HeLa_CUDC101_4h_R1 2 LVSPETEASEESLQFNLEKPATGER 25 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LVS(0.828)PET(0.169)EAS(0.002)EESLQFNLEKPATGER;LVS(0.701)PET(0.213)EAS(0.078)EES(0.008)LQFNLEKPATGER ; 104.49 7.38E-07 36402000 1655.92 1591.82 1447.83 1318.1 1553.79 1486.39 1511.32 2301.6 1872.53 1870.49 TRUE FALSE FALSE 1461.815568 1640.862087 1526.104069 1371.857815 1439.170007 1458.039587 1569.612119 2563.604841 1795.343521 1859.364242 0.786191072 0.882485556 0.820766601 0.737810153 0.774011877 0.784160281 0.844166024 1.378753437 0.965568488 1 10.8605937 -2.106918574 14.32795084 0.88533282 1.084900552 0 0.179761536 0 0 0.023144915 0 0.007817744 2.106918574 0.199567732 (ac)ATDELATKLS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 ATDELATKLSR 11 1 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 0 ATDELAT(0.004)KLS(0.996)R 74.237 0.0015843 8424300 2424.9 1992.3 2095 2158.9 2023.8 1854.2 1938.2 1394.9 1993 2345.5 TRUE FALSE FALSE 2140.656898 2053.680402 2208.262037 2246.949274 1874.508306 1818.834224 2012.957023 1553.689778 1910.847696 2331.548862 0.918126544 0.880822373 0.94712235 0.963715284 0.803975562 0.780096979 0.863356139 0.666376675 0.819561506 1 11.18707295 -2.098361899 0.23463173 0.988729348 9.70E-16 0.430813086 0.071665489 11.53408775 0.221905368 0.034593447 3.998996493 0.0079733 2.098361899 -0.988729348 TGVSPGDVS(ph)DSATSDSTK ddPTM_HeLa_CUDC101_4h_R1 2 TGVSPGDVSDSATSDSTK 18 0 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 0 TGVSPGDVS(0.983)DS(0.017)ATSDSTK;T(0.001)GVS(0.06)PGDVS(0.543)DS(0.196)AT(0.136)S(0.046)DS(0.009)T(0.01)K ; 254.59 5.08E-57 63578000 5250.4 4354.5 4225.5 4378.4 4588.3 4030.2 4435.4 3309.96 4181.8 4508.1 TRUE FALSE FALSE 4634.956071 4488.656984 4453.943311 4556.970077 4249.83025 3953.33065 4606.474864 3686.752467 4009.424434 4481.285621 1.034291599 1.001644921 0.993898557 1.016889005 0.948350677 0.882186717 1.027936011 0.822699729 0.894704059 1 12.12969697 -2.09084094 0.407680868 1.016481806 5.16E-14 0.238945318 0.059876832 15.57981457 0.429181658 0.010510218 11.31291747 0.008112581 2.09084094 -1.016481806 DYASHLS(ph)PGSIIQPQR ddPTM_HeLa_CUDC101_4h_R1 2 DYASHLSPGSIIQPQR 16 0 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;C9JQE8;C9J330 Q9Y618 NCOR2 Nuclear receptor corepressor 2 1 0 DYASHLS(1)PGSIIQPQR;DY(0.018)AS(0.154)HLS(0.634)PGS(0.195)IIQPQR ; 100.27 0.002749 17595700 3549.3 3056.24 2937.83 2523.78 2935.41 2770.72 2571.47 2013.53 4007.3 3484 TRUE FALSE FALSE 3133.256434 3150.399132 3096.657976 2626.710657 2718.870652 2717.873132 2670.652459 2242.742116 3842.117398 3463.277013 0.904708582 0.90965843 0.894141001 0.758446595 0.785057228 0.7847692 0.771134521 0.647578033 1.109387838 1 11.75792207 -2.083744864 0.143056666 1.055294514 1.11E-13 0.848334209 0.049554334 11.16734505 0.140075207 0.094492879 2.312953036 0.008246224 2.083744864 -1.055294514 NSGSFPS(ph)PSIS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 NSGSFPSPSISPR 13 0 Q9ULD2-2;Q9ULD2;Q9ULD2-4;Q9ULD2-7;Q9ULD2-3;Q9ULD2-6 Q9ULD2-2 MTUS1 Microtubule-associated tumor suppressor 1 2 0 NSGS(0.002)FPS(0.678)PS(0.321)IS(1)PR 116.78 0.027084 7656500 3776.5 3492.5 2544.6 3027 3687.3 3181.7 2392.7 2230.4 3346.9 3792.3 TRUE FALSE FALSE 3333.824395 3600.099785 2682.168773 3150.454144 3415.295225 3121.014374 2484.98724 2484.29972 3208.939365 3769.743231 0.884363786 0.954998674 0.711499062 0.835721149 0.905975557 0.827911659 0.659192706 0.659010327 0.851235527 1 11.88025055 -2.082331758 0.155149563 1.029619039 1.21E-15 0.479872388 0.081013863 21.60727347 0.291133941 0.155099425 4.77499545 0.008273099 2.082331758 -1.029619039 LSTGS(ph)FPEDLLESDSSR ddPTM_HeLa_CUDC101_4h_R1 1 LSTGSFPEDLLESDSSR 17 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 LS(0.008)T(0.005)GS(0.987)FPEDLLESDSSR 154.81 1.63E-07 0 599.57 616.8 520.93 473.65 611.5 513.67 476.3 419.48 607.28 582.9 TRUE FALSE FALSE 529.2893135 635.8028769 549.0930515 492.9674943 566.3908633 503.8726006 494.6710505 467.2319076 582.2476614 579.4328849 0.91346095 1.097284765 0.947638744 0.850775831 0.977491748 0.869596141 0.853715872 0.806360702 1.004857813 1 9.178497755 -2.078701917 0.350317584 0.973328548 2.82E-11 0.51157237 0.059430839 18.05824717 0.457394805 0.018260282 10.31706292 0.008342536 2.078701917 -0.973328548 SVSGS(ph)PEPAAK ddPTM_HeLa_CUDC101_4h_R1 1 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 S(0.001)VS(0.079)GS(0.919)PEPAAK 176.87 3.30E-07 183110000 8525.5 7305.4 8378.8 8087.7 7600.4 6728.7 6791 5058.7 9213.7 9095.3 TRUE FALSE FALSE 7526.153814 7530.470715 8831.783272 8417.551364 7039.733634 6600.361258 7052.931145 5634.56196 8833.907386 9041.200751 0.83242857 0.83290604 0.976837426 0.931021398 0.778628174 0.73003149 0.780087882 0.623209474 0.977072363 1 13.14229867 -2.076550257 0.194689391 0.974833655 3.93E-29 0.699625301 0.064281649 18.99849203 0.310826469 0.083165745 5.177282539 0.008383971 2.076550257 -0.974833655 VGS(ph)PQPSSSGGEK ddPTM_HeLa_CUDC101_4h_R1 2 VGSPQPSSSGGEK 13 0 V9GYB6;O94761 V9GYB6 RECQL4 ATP-dependent DNA helicase Q4 1 0 VGS(0.901)PQPS(0.072)S(0.023)S(0.005)GGEK;VGS(0.955)PQPS(0.035)S(0.008)S(0.002)GGEK ; 110.51 0.004508 97889000 7089 5373.5 6301.2 5934.8 5687.9 5625.9 5342.6 4229.6 6562.8 7215.4 TRUE FALSE FALSE 6258.038166 5539.051166 6641.861932 6176.846796 5268.314949 5518.595331 5548.665872 4711.080567 6292.278606 7172.48248 0.872506581 0.772264161 0.926019959 0.861186739 0.734517646 0.769412173 0.77360466 0.656827058 0.877280443 1 12.80825682 -2.069728111 0.077261999 1.212363758 2.55E-12 0.584853764 0.061836885 51.13918327 0.361379697 1.098976078 6.872239306 0.008516711 2.069728111 -1.212363758 VVSQSQPGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 4 VVSQSQPGSR 10 0 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 VVSQSQPGS(1)R;VVSQSQPGS(1)R;VVSQSQPGS(1)R;VVSQSQPGS(1)R ;;; 146.67 0.0007107 121098900 8256.3 5254.5 6995.2 7815.8 7024.2 6097.5 6658.8 3886.25 7714.4 8195.7 TRUE FALSE FALSE 7288.50903 5416.384917 7373.381671 8134.562107 6506.03876 5981.200347 6915.632147 4328.644991 7396.409167 8146.951612 0.89463021 0.664835778 0.905047927 0.998479247 0.798585664 0.734164216 0.848861326 0.531320818 0.907874444 1 12.99204462 -2.069423156 0.162286837 1.019489462 2.29E-21 0.389251248 0.11056234 31.15715903 0.435049668 0.202568569 7.177592583 0.008522693 2.069423156 -1.019489462 GEGDIHENVDTDLPGS(ph)LGQSEEKPVPAAPVPSPVAPAPVPSR ddPTM_HeLa_CUDC101_4h_R1 2 GEGDIHENVDTDLPGSLGQSEEKPVPAAPVPSPVAPAPVPSR 42 1 Q9UK76-3;Q9UK76 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 GEGDIHENVDT(0.001)DLPGS(0.756)LGQS(0.129)EEKPVPAAPVPS(0.114)PVAPAPVPS(0.001)R;GEGDIHENVDT(0.001)DLPGS(0.96)LGQS(0.038)EEKPVPAAPVPS(0.001)PVAPAPVPSR ; 101.24 9.47E-17 474370000 3459.9 2574.95 2479.53 2393.94 2939.41 2942.1 2841.6 6588.5 2777.96 4031.4 TRUE FALSE FALSE 3054.335767 2654.281157 2613.580892 2491.575221 2722.57558 2885.984344 2951.201464 7338.508208 2663.451313 4007.421054 0.762169916 0.662341471 0.652185248 0.621740313 0.67938346 0.72016 0.736434087 1.831229639 0.664629765 1 11.96845838 -2.066888508 13.81567656 0.851589458 1.040197015 0 0.348319852 0 0 0.042834699 0 0.008572579 2.066888508 0.188607558 ELLDTS(ph)FEDLSKPK ddPTM_HeLa_CUDC101_4h_R1 2 ELLDTSFEDLSKPK 14 1 P78345 P78345 RPP38 Ribonuclease P protein subunit p38 1 0 ELLDT(0.121)S(0.879)FEDLSKPK;ELLDT(0.208)S(0.791)FEDLSKPK ; 212.87 3.28E-23 101762000 5595.6 5016.7 4508.7 4640.3 4706.3 4430.3 3935.9 3375.1 4544 5561.5 TRUE FALSE FALSE 4939.69225 5171.258581 4752.45396 4829.551491 4359.125625 4345.799409 4087.708981 3759.307741 4356.694397 5528.419951 0.893508868 0.935395398 0.859640549 0.873586221 0.788493939 0.786083447 0.739399144 0.679996776 0.78805417 1 12.43265149 -2.060721677 0.170737898 1.018287192 2.34E-17 0.484253519 0.065326539 6.617597438 0.096307888 0.038859424 1.614970544 0.008695175 2.060721677 -1.018287192 SAES(ph)PSWTPAEHVAK ddPTM_HeLa_CUDC101_4h_R1 3 SAESPSWTPAEHVAK 15 0 Q13415 Q13415 ORC1 Origin recognition complex subunit 1 1 0 S(0.178)AES(0.802)PS(0.021)WTPAEHVAK;S(0.193)AES(0.62)PS(0.119)WT(0.068)PAEHVAK;SAES(0.93)PS(0.07)WTPAEHVAK ;; 246.96 1.10E-55 82434100 15833.7 12635.1 13221.2 12612.5 12923.8 12702.6 10931.4 9168.1 14201.4 15518.8 TRUE FALSE FALSE 13977.69769 13024.37245 13935.97806 13126.89227 11970.43702 12460.31907 11353.02776 10211.75945 13616.01228 15426.49349 0.90608392 0.844285998 0.903379506 0.850931696 0.775966167 0.807722058 0.73594351 0.661962451 0.882638189 1 13.91312255 -2.054621364 0.154632516 1.037937217 1.78E-19 0.779089974 0.042951522 8.012813715 0.106794443 0.057329536 1.780767374 0.008818173 2.054621364 -1.037937217 LREVMESAVGNSSGSGQNEES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 LREVMESAVGNSSGSGQNEESPR 23 1 Q9NVF7 Q9NVF7 FBXO28 F-box only protein 28 1 0 LREVMESAVGNS(0.033)S(0.113)GS(0.067)GQNEES(0.788)PR 92.238 0.00010718 7006600 930.04 918.87 837.55 761.98 902.91 714.48 785.01 948.8 1013.5 786.39 TRUE FALSE FALSE 821.022121 947.1792956 882.8304865 793.056838 836.3041282 700.8524844 815.2880987 1056.807557 971.723101 781.7125173 1.050286522 1.211672162 1.12935442 1.014512139 1.069835917 0.896560396 1.042951316 1.35191331 1.243069645 1 9.610494329 -2.052234947 0.012590078 1.20E-06 2.290100717 0 0.1369179 11220.90423 13.1964687 1027.972539 1398.902314 0.008866762 2.052234947 2.290099515 GFS(ph)VVADTPELQR ddPTM_HeLa_CUDC101_4h_R1 2 GFSVVADTPELQR 13 0 C9J9W2;Q14847;Q14847-2;Q14847-3 C9J9W2 LASP1 LIM and SH3 domain protein 1 1 0 GFS(0.841)VVADT(0.159)PELQR;GFS(0.997)VVADT(0.003)PELQR ; 151.16 0.00029595 373350000 3920.2 3745.6 3405 3350 3719.7 3307.7 2790 2519.6 3822.3 4042.7 TRUE FALSE FALSE 3460.680099 3860.997496 3589.0846 3486.62748 3445.305142 3244.611134 2897.611235 2806.421079 3664.743176 4018.653841 0.861154067 0.960768867 0.893106185 0.867610802 0.85732817 0.807387564 0.721040266 0.698348549 0.911933031 1 11.9724966 -2.034529888 0.210655803 0.978009936 1.64E-25 0.834150337 0.036827649 11.02599354 0.189733985 0.039560306 3.32902836 0.009235706 2.034529888 -0.978009936 TLS(ph)SSAQEDIIR ddPTM_HeLa_CUDC101_4h_R1 2 TLSSSAQEDIIR 12 0 Q9H788-2;Q9H788 Q9H788-2 SH2D4A SH2 domain-containing protein 4A 1 0 T(0.001)LS(0.484)S(0.484)S(0.03)AQEDIIR;T(0.162)LS(0.279)S(0.279)S(0.279)AQEDIIR ; 195.87 3.97E-16 121691100 3414.1 2515.8 2543.8 3027.3 4124.4 4132.9 5070.1 10758.1 2398.5 2733.8 TRUE FALSE FALSE 3013.904373 2593.308816 2681.325523 3150.766379 3820.151229 4054.071818 5265.655455 11982.75862 2299.632815 2717.539236 1.109056434 0.954285694 0.986674079 1.15941891 1.405739125 1.491817216 1.937655724 4.409415128 0.846218809 1 11.40808515 -2.033197397 0.897187931 1.053477426 200 0.981774897 0.136101169 8.488351488 0.144877128 0.019391642 3309.114799 0.009264087 2.033197397 198.9465226 up TPAAPAS(ph)PAAVPSEGSGGSTTGWR ddPTM_HeLa_CUDC101_4h_R1 4 TPAAPASPAAVPSEGSGGSTTGWR 24 0 P07199 P07199 CENPB Major centromere autoantigen B 1 0 T(0.001)PAAPAS(0.997)PAAVPS(0.002)EGSGGSTTGWR;T(0.063)PAAPAS(0.936)PAAVPS(0.001)EGSGGSTTGWR;T(0.001)PAAPAS(0.998)PAAVPS(0.001)EGSGGSTTGWR;TPAAPAS(0.999)PAAVPS(0.001)EGSGGSTTGWR ;;; 211.98 6.61E-28 277091000 13514.7 11161.5 11169.3 10590.6 12382.4 11593.5 10336.6 7584.3 12969.5 12929.7 TRUE FALSE FALSE 11930.52735 11505.37259 11773.14614 11022.53044 11468.97502 11372.3733 10735.28612 8447.666055 12434.89172 12852.79357 0.92824391 0.895165127 0.915999007 0.85759803 0.892333247 0.884817238 0.835249245 0.657263031 0.967485524 1 13.64979434 -2.029192206 0.243537394 0.986432933 5.10E-25 0.797049009 0.039808063 9.782998628 0.18839887 0.025145769 3.5711197 0.009349918 2.029192206 -0.986432933 SENSEDGAAWMQEPGRYS(ph)PPPR ddPTM_HeLa_CUDC101_4h_R1 1 SENSEDGAAWMQEPGRYSPPPR 22 1 P35548 P35548 MSX2 Homeobox protein MSX-2 1 0 SENSEDGAAWMQEPGRY(0.441)S(0.559)PPPR 79.695 0.00066818 5793400 1694 1431.9 1904 2034.1 1863 1807.8 1598 1272.4 1697.9 1757.9 TRUE FALSE FALSE 1495.431888 1476.015142 2006.935999 2117.05939 1725.570202 1773.319227 1659.635395 1417.244873 1627.911843 1747.443933 0.855782472 0.844670959 1.148498079 1.211517778 0.987482442 1.01480751 0.949750298 0.811038824 0.931596037 1 10.77103045 -2.02259898 9.231479032 0.960376707 0.555618337 0 0.123003964 0 0 0.017683847 0 0.009492946 2.02259898 -0.40475837 STETSDFENIES(ph)PLNER ddPTM_HeLa_CUDC101_4h_R1 2 STETSDFENIESPLNER 17 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 STETSDFENIES(1)PLNER;STETSDFENIES(1)PLNER ; 204.9 1.95E-17 55726500 4499.8 3922.7 3307.3 3610.5 4117.7 3751.8 3393.8 2617.5 4292.8 4174.8 TRUE FALSE FALSE 3972.340265 4043.553737 3486.102642 3757.751796 3813.945475 3680.240666 3524.700003 2915.46562 4115.848967 4149.968104 0.957197782 0.974357787 0.840031189 0.90548932 0.919030069 0.886811796 0.84933183 0.702527236 0.991778458 1 12.01888453 -2.010902112 0.259596407 0.994695383 1.10E-20 0.772887026 0.040683765 9.894971826 0.198317307 0.02149007 3.957427372 0.009752094 2.010902112 -0.994695383 RAS(ph)WAS(ph)ENGETDAEGTQMTPAK ddPTM_HeLa_CUDC101_4h_R1 1 RASWASENGETDAEGTQMTPAK 22 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 2 0 RAS(0.963)WAS(0.963)ENGET(0.054)DAEGT(0.019)QMT(0.001)PAK 80.722 0.0005041 18907000 2316.9 2067.2 1976.1 2301.7 2708.9 2626.9 3021 3553.8 1939.4 2154.6 TRUE FALSE FALSE 2045.316494 2130.887982 2082.933943 2395.573275 2509.069844 2576.796259 3137.520982 3958.350227 1859.457111 2141.784343 0.954959121 0.994912484 0.972522724 1.118494158 1.171485753 1.203107244 1.46490985 1.848155366 0.868181298 1 11.06459751 -1.994374669 0.51585692 0.974613707 11.37965303 0.96972589 0.048763236 3.041148472 0.080385702 0.007422326 31.21969281 0.010130371 1.994374669 10.40503932 WDKDDFES(ph)EEEDVKSTQPISSVGK ddPTM_HeLa_CUDC101_4h_R1 1 WDKDDFESEEEDVKSTQPISSVGK 24 2 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 WDKDDFES(0.933)EEEDVKS(0.032)T(0.032)QPIS(0.003)S(0.001)VGK 57.845 0.0070413 14100000 969.51 808.62 812.44 630.17 883.12 992.19 801.88 882.86 720.07 917.45 TRUE FALSE FALSE 855.8655075 833.5326237 856.3629639 655.8710564 817.973997 973.2656289 832.8087802 983.3612138 690.3884098 911.9929666 0.938456259 0.913968259 0.93900172 0.719162406 0.89690823 1.067185455 0.913174565 1.07825526 0.757010673 1 9.832878888 -1.990483602 1.504753036 0.945090669 138.0121088 0.09550176 0.104733995 2186.356293 5.988250885 0.013417862 1033727.137 0.010221542 1.990483602 137.0670181 SSDEENGPPSS(ph)PDLDR ddPTM_HeLa_CUDC101_4h_R1 2 SSDEENGPPSSPDLDR 16 0 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 1 0 SSDEENGPPSS(1)PDLDR;SSDEENGPPS(0.004)S(0.996)PDLDR ; 416.8 0 327210000 11441.8 10692.1 9138.4 9128.8 10588.3 9769.9 9380.5 7150.7 11027.2 10661.3 TRUE FALSE FALSE 10100.60955 11021.51093 9632.449546 9501.111922 9807.222204 9583.555435 9742.309027 7964.706784 10572.65415 10597.88611 0.953077759 1.039972577 0.908902912 0.896510098 0.925394187 0.90428934 0.919269081 0.751537306 0.997619151 1 13.37148891 -1.977775738 0.323537406 0.986112976 2.60E-15 0.688471388 0.04188365 12.27173804 0.279701601 0.01391557 6.492754359 0.010525052 1.977775738 -0.986112976 SNS(ph)PLPVPPSK ddPTM_HeLa_CUDC101_4h_R1 5 SNSPLPVPPSK 11 0 Q13247-3;Q13247 Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 1 0 S(0.365)NS(0.635)PLPVPPSK;S(0.002)NS(0.994)PLPVPPS(0.004)K;S(0.002)NS(0.961)PLPVPPS(0.036)K;S(0.077)NS(0.922)PLPVPPS(0.001)K;S(0.025)NS(0.952)PLPVPPS(0.023)K ;;;; 107.11 0.0016207 1667990000 37984.1 33169.8 30811 31505.6 35270.5 30397 27046.5 24914.1 37580.6 35601 TRUE FALSE FALSE 33531.66138 34191.72222 32476.73586 32790.53455 32668.66548 29817.22787 28089.69256 27750.22044 36031.51176 35389.24367 0.947509975 0.966161429 0.917700761 0.926567825 0.92312415 0.842550583 0.793735318 0.784142795 1.018148681 1 15.11102331 -1.976598337 0.262745428 0.992890341 1.80E-11 0.92794578 0.02057149 4.993240625 0.099405555 0.010137911 2.032167163 0.010553625 1.976598337 -0.992890341 HEAPS(ph)SPISGQPCGDDQNASPSK ddPTM_HeLa_CUDC101_4h_R1 2 HEAPSSPISGQPCGDDQNASPSK 23 0 A0A088AWL3;O75376;O75376-2;E7EVU5;E7EW50;J3KS51;O75376-3 A0A088AWL3 NCOR1 Nuclear receptor corepressor 1 1 0 HEAPS(0.533)S(0.458)PIS(0.009)GQPCGDDQNASPSK;HEAPS(0.469)S(0.417)PIS(0.114)GQPCGDDQNASPSK ; 109.41 6.14E-06 84934000 11668.9 8898.5 9284.3 8213.2 12178.4 10250.6 9400.8 10162.2 10052.2 9666.4 TRUE FALSE FALSE 10301.08923 9172.652238 9786.237341 8548.169796 11280.02369 10055.08688 9763.392005 11319.02377 9637.844061 9608.903823 1.072035835 0.954599235 1.018455125 0.889609258 1.173913685 1.046434335 1.016077607 1.177972428 1.003011815 1 13.23015614 -1.964307386 1.440198737 1.026648727 129.1851406 0.297185273 0.070998511 1189.722361 3.724196027 0.010072657 502898.9675 0.010856569 1.964307386 128.1584919 S(ph)PHEAGFCVYLK ddPTM_HeLa_CUDC101_4h_R1 2 SPHEAGFCVYLK 12 0 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 0 S(1)PHEAGFCVYLK;S(1)PHEAGFCVYLK ; 123.64 0.0027584 53616000 1781.48 1558.69 1392.04 1516.69 1732.91 1522.86 1316.44 1241.15 1864.41 1633.21 TRUE FALSE FALSE 1572.657615 1606.711391 1467.297893 1578.547174 1605.076682 1493.813983 1367.215532 1382.437499 1787.558231 1623.495594 0.9686861 0.989661689 0.903789267 0.972313802 0.988654781 0.920121981 0.84214305 0.851519095 1.101055178 1 10.66488775 -1.963164377 0.356246119 0.988914505 8.95E-12 0.589463524 0.046842552 10.63792263 0.252765328 0.008846948 6.415413718 0.01088518 1.963164377 -0.988914505 SLKESEQES(ph)EEEILAQK ddPTM_HeLa_CUDC101_4h_R1 1 SLKESEQESEEEILAQK 17 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 0 SLKESEQES(1)EEEILAQK 68.458 0.015444 76069000 4295.8 3669.7 3567.3 3827 4603.5 3332.4 3168.3 2976.2 3633.1 4200.3 TRUE FALSE FALSE 3792.252836 3782.759107 3760.159028 3983.081602 4263.908976 3268.840022 3290.502392 3314.998578 3483.34208 4175.316429 0.908255195 0.90598142 0.900568638 0.95395922 1.021218164 0.782896357 0.788084556 0.793951461 0.834270202 1 12.02766982 -1.951754457 0.288885739 0.969266083 8.82E-19 0.287370453 0.06975897 17.13641083 0.359497516 0.025620615 7.716044466 0.011174949 1.951754457 -0.969266083 TPSNELYK(ac)PLR ddPTM_HeLa_CUDC101_4h_R1 1 TPSNELYKPLR 11 1 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 1 TPSNELYK(1)PLR 84.507 0.03317 558520 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 VINAAHSFYNGTTTLPIS(ph)DEDRTPR ddPTM_HeLa_CUDC101_4h_R1 1 VINAAHSFYNGTTTLPISDEDRTPR 25 1 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 1 0 VINAAHSFY(0.001)NGT(0.004)T(0.006)T(0.015)LPIS(0.791)DEDRT(0.183)PR 83.082 2.35E-05 41658000 1961.1 1773.4 1753.3 1581.4 1750.3 1789.4 1461.1 1141.6 2012.5 2001.2 TRUE FALSE FALSE 1731.222831 1828.036352 1848.088701 1645.896327 1621.183856 1755.270176 1517.455116 1271.555129 1929.543898 1989.296773 0.870268757 0.918935966 0.929016086 0.82737596 0.814953243 0.882357122 0.762809821 0.639198307 0.969962815 1 10.95804281 -1.937104117 0.201984985 0.98281844 5.69E-26 0.800351633 0.045083369 13.92005055 0.223664698 0.050985669 4.044396433 0.011558351 1.937104117 -0.98281844 HT(ph)LSIGDMVT(ph)GT(ph)VKS(ph)IK ddPTM_HeLa_CUDC101_4h_R1 1 HTLSIGDMVTGTVKSIK 17 1 A0A3B3IUD7;Q14690 A0A3B3IUD7 PDCD11 Protein RRP5 homolog 4 0 HT(0.501)LS(0.501)IGDMVT(0.999)GT(0.999)VKS(1)IK 45.873 0.036727 23174000 923.27 1074.8 1053.4 681.96 1141.5 984.54 913.73 1501.8 993.98 810.38 TRUE FALSE FALSE 815.0456902 1107.913314 1110.34999 709.7732765 1057.293819 965.7615399 948.9728722 1672.758842 953.0077237 805.5598237 1.011775496 1.375333379 1.378358202 0.881093192 1.312495718 1.198870042 1.178029048 2.076517215 1.183037803 1 9.653847922 -1.925539602 1.107880346 1.071600457 200 0.674873812 0.179039535 127.4637329 1.002754031 0.02773332 63459.23427 0.011870265 1.925539602 198.9283995 SLATMDS(ph)PPHQK ddPTM_HeLa_CUDC101_4h_R1 1 SLATMDSPPHQK 12 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 SLAT(0.001)MDS(0.999)PPHQK 98.592 0.0014583 0 1855.4 1733.2 1858.4 1722.3 1434.4 1538.8 1512.8 1080.5 1833.9 2030.5 TRUE FALSE FALSE 1637.912825 1786.597838 1958.870725 1792.542838 1328.58717 1509.449954 1571.149203 1203.499752 1758.305866 2018.422496 0.811481654 0.885145623 0.970495885 0.888090993 0.658230461 0.74783647 0.778404524 0.5962576 0.87112875 1 10.97901248 -1.91926972 0.138266439 1.023046985 4.14E-18 0.56029434 0.08115332 33.29774308 0.387737884 0.263075828 6.481878676 0.012042878 1.91926972 -1.023046985 SSATIQNET(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SSATIQNETPK 11 0 F5GX09;Q5HYJ3-3;Q5HYJ3-2;Q5HYJ3 F5GX09 FAM76B Protein FAM76B 1 0 SSATIQNET(1)PK;SSATIQNET(1)PK ; 171.73 3.67E-06 102027000 5360.9 5322.7 4542.8 4204.2 5295.2 5258.3 3732.3 3907.2 4520.4 5211.8 TRUE FALSE FALSE 4732.503429 5486.686078 4788.397509 4375.665448 4904.583646 5158.006688 3876.256061 4351.979855 4334.067199 5180.799982 0.913469627 1.059042252 0.924258324 0.844592623 0.946684617 0.99560043 0.748196432 0.840020821 0.836563313 1 12.33895917 -1.910367987 0.327313504 0.971312156 4.87E-15 0.183591863 0.080787737 23.30129245 0.514131213 0.023066353 12.43935956 0.012292268 1.910367987 -0.971312156 SASVGAEEYMYDQT(ph)SS(ph)GTFQYTLEATK ddPTM_HeLa_CUDC101_4h_R1 1 SASVGAEEYMYDQTSSGTFQYTLEATK 27 0 Q6ISB3-2;Q6ISB3 Q6ISB3-2 GRHL2 Grainyhead-like protein 2 homolog 2 0 S(0.001)AS(0.007)VGAEEY(0.313)MY(0.294)DQT(0.334)S(0.053)S(0.202)GT(0.202)FQY(0.19)T(0.202)LEAT(0.202)K 41.76 0.0032484 0 188.59 251.43 171.9 211.17 255.34 249.83 201.99 307.24 375.45 242.74 TRUE FALSE FALSE 166.4837661 259.1762603 181.193434 219.7824254 236.5040769 245.064909 209.780822 342.2149597 359.9737921 241.2961717 0.689956102 1.074100175 0.750917152 0.910840913 0.980140196 1.01561872 0.869391423 1.418236176 1.49183383 1 7.914661216 -1.903079346 1.226457763 0.87520324 199.9999087 0.129494653 0.228936689 324.3944521 1.672436685 0.020860023 180401.9833 0.012500306 1.903079346 199.1247055 S(ph)QASTTVDINTQVEK ddPTM_HeLa_CUDC101_4h_R1 1 SQASTTVDINTQVEK 15 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 S(1)QASTTVDINTQVEK 111.22 0.00038484 0 674.35 423.08 364.71 510.99 772.67 715.34 788.87 1498.2 545.68 582.61 TRUE FALSE FALSE 595.3037152 436.1145933 384.4273258 531.8303809 715.6716735 701.6960813 819.2969802 1668.749032 523.1868394 579.1446098 1.027901676 0.753032293 0.663784691 0.918303256 1.23573916 1.211607722 1.414667367 2.881403028 0.903378587 1 9.177779817 -1.896116314 0.955524768 0.968068137 199.9999999 0.936851122 0.150752826 32.62104563 0.366105837 0.025189197 13817.03667 0.012702339 1.896116314 199.0319318 up RSQS(ph)YIPTSGCR ddPTM_HeLa_CUDC101_4h_R1 2 RSQSYIPTSGCR 12 1 A0A087WZ32;A0A087X038;A8K727;Q9HB19;E5RHB5 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 RS(0.041)QS(0.955)YIPT(0.001)S(0.002)GCR;RS(0.001)QS(0.999)YIPTSGCR ; 113.52 0.0099594 38931000 4972.6 4070.3 3912.7 4344 3979.5 4498.8 4915.2 8237.7 3773.5 2958.1 TRUE FALSE FALSE 4389.719366 4195.701119 4124.232397 4521.167096 3685.940213 4412.992886 5104.78091 9175.44647 3617.954733 2940.50509 1.492845356 1.42686409 1.402559177 1.537547788 1.25350581 1.500760159 1.73602179 3.120364084 1.230385469 1 11.52184827 -1.879997596 0.955764503 1.281548156 200 0.920391048 0.155360295 46.39419848 0.502760845 0.033231797 19644.28639 0.01318264 1.879997596 198.7184518 up GLNGGITPLNS(ph)ISPLKK ddPTM_HeLa_CUDC101_4h_R1 1 GLNGGITPLNSISPLKK 17 1 E5RJM0;B7ZLQ8;Q17RY0-2;Q17RY0;H0YBG1 E5RJM0 CPEB4 Cytoplasmic polyadenylation element-binding protein 4 1 0 GLNGGIT(0.001)PLNS(0.566)IS(0.433)PLKK 84.762 0.0051513 19994000 1021.4 1032.4 1150.3 856.1 1399.6 946.86 927.88 785.39 1150.4 1030.5 TRUE FALSE FALSE 901.6730403 1064.20702 1212.488697 891.0154584 1296.354296 928.8002231 963.6686424 874.7956229 1102.980025 1024.37054 0.880221565 1.038888741 1.183642686 0.869817535 1.26551306 0.906703372 0.940742246 0.853983582 1.076739307 1 10.00052195 -1.876698715 16.87075975 0.972299523 0.332249505 0 0.136024816 0 0 0.016988038 0 0.013283156 1.876698715 -0.640050018 VETSEGLNS(ph)DLEMHADK ddPTM_HeLa_CUDC101_4h_R1 1 VETSEGLNSDLEMHADK 17 0 P49454 P49454 CENPF Centromere protein F 1 0 VETSEGLNS(1)DLEMHADK 110.56 0.00018977 0 831.35 607.03 563.71 686.93 834.32 859.15 732.98 1117.4 805.05 756.22 TRUE FALSE FALSE 733.9004132 625.7318748 594.1858677 714.9459746 772.7738758 842.7631452 761.2512841 1244.600299 771.8654983 751.7219698 0.976292356 0.832398014 0.790433021 0.951077663 1.02800491 1.12111017 1.012676647 1.655665724 1.026796514 1 9.554055358 -1.863724769 1.151892778 0.964046378 199.9999999 0.835481906 0.091206233 135.584882 0.796798763 0.01414283 70589.94415 0.013685959 1.863724769 199.0359535 TISINS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 TISINSPK 8 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 0 TISINS(1)PK;TIS(0.004)INS(0.996)PK ; 118.77 0.0076943 34464000 10771.9 9706.9 8593.6 9482.9 10140.8 9625.8 8873.8 7728.4 10902.3 9954.9 TRUE FALSE FALSE 9509.234211 10005.95808 9058.19601 9869.653651 9392.733387 9442.203903 9216.065439 8608.169817 10452.90258 9895.687812 0.960947272 1.011143265 0.915368005 0.997369141 0.949174384 0.954173584 0.931321361 0.869891005 1.056308847 1 13.27258427 -1.854484033 0.43739928 0.982745788 1.13E-15 0.534288922 0.03463951 16.41091046 0.3821299 0.005575334 13.08364831 0.013980283 1.854484033 -0.982745788 QGS(ph)PDQVSPVSEMTSTSLYQDK ddPTM_HeLa_CUDC101_4h_R1 2 QGSPDQVSPVSEMTSTSLYQDK 22 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QGS(0.834)PDQVS(0.166)PVSEMTSTSLYQDK;QGS(0.99)PDQVS(0.01)PVSEMTSTSLYQDK ; 157.96 1.34E-07 45341000 7780.4 6602.1 5366.2 5799.9 6739.7 6589.6 5621.8 4458.5 7188.9 7637.1 TRUE FALSE FALSE 6868.393306 6805.502876 5656.313004 6036.444991 6242.525758 6463.914359 5838.634709 4966.037618 6892.570499 7591.67419 0.904727091 0.896442959 0.745067934 0.795140155 0.822285783 0.851447809 0.769083942 0.654142617 0.90791179 1 12.89020236 -1.852516463 0.078305782 1.211625943 1.33E-17 0.632141124 0.057005808 54.14371456 0.370184891 1.055199871 7.290623433 0.014043764 1.852516463 -1.211625943 T(ph)PSIQPSLLPHAAPFAK ddPTM_HeLa_CUDC101_4h_R1 1 TPSIQPSLLPHAAPFAK 17 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3;A0A0A0MSW3;H0YF36 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 0 T(0.499)PS(0.499)IQPS(0.001)LLPHAAPFAK 96.234 0.006252 11131000 1220.8 682.65 730.02 630.73 1263.4 1173.2 1032 1889.6 1015.3 814.1 TRUE FALSE FALSE 1077.699675 703.6816374 769.4870894 656.4538956 1170.201499 1150.823165 1071.804586 2104.704426 973.4489043 809.257697 1.331713839 0.869539629 0.950855447 0.811180293 1.446018374 1.42207256 1.324429276 2.600783945 1.202891128 1 9.660455372 -1.844205466 0.988034369 1.115924726 200 0.822104078 0.205560557 75.54623112 0.692953579 0.034161086 33288.85462 0.014315105 1.844205466 198.8840752 up NQGGYDRYS(ph)GGNYRDNYDN ddPTM_HeLa_CUDC101_4h_R1 3 NQGGYDRYSGGNYRDNYDN 19 2 P98179 P98179 RBM3 RNA-binding protein 3 1 0 NQGGY(0.102)DRY(0.053)S(0.735)GGNY(0.093)RDNY(0.017)DN;NQGGYDRY(0.097)S(0.762)GGNY(0.137)RDNY(0.005)DN;NQGGYDRY(0.017)S(0.923)GGNY(0.056)RDNY(0.003)DN ;; 71.148 0.0029672 48422000 4019.2 3928.9 4078.7 3948.8 4609.8 3744.2 3909.8 2741.11 4031.2 3922.7 TRUE FALSE FALSE 3548.075469 4049.944752 4299.206859 4109.849132 4269.744238 3672.785623 4060.602296 3053.146882 3865.03223 3899.367606 0.909910485 1.038615786 1.102539513 1.053978375 1.094983769 0.941892633 1.041348933 0.782985138 0.99119463 1 11.92902445 -1.832258473 15.27056314 0.98157469 0.2786407 0 0.092813424 0 0 0.012416142 0 0.014714365 1.832258473 -0.70293399 VLSSTS(ph)EEDEPGVVK ddPTM_HeLa_CUDC101_4h_R1 1 VLSSTSEEDEPGVVK 15 0 Q8NI08-2;Q8NI08;Q8NI08-7;Q8NI08-4;Q8NI08-3 Q8NI08-2 NCOA7 Nuclear receptor coactivator 7 1 0 VLSST(0.023)S(0.977)EEDEPGVVK 233.52 3.60E-56 0 3429.5 2736.5 3118.2 2528 3085.4 3365 2775.1 3074.8 2833.9 2951 TRUE FALSE FALSE 3027.499209 2820.808321 3286.779324 2631.102767 2857.796189 3300.818231 2882.136537 3424.822803 2717.085443 2933.447321 1.032061898 0.961601833 1.120449411 0.896931998 0.974210844 1.125235217 0.982508367 1.16750786 0.926243135 1 11.51838137 -1.831160739 1.438573115 1.012469992 199.9799548 0.301696911 0.072030365 1562.934087 3.022553472 0.008703768 1026443.622 0.014751605 1.831160739 198.9674848 ANNSQEPS(ph)PQLASSVASTR ddPTM_HeLa_CUDC101_4h_R1 2 ANNSQEPSPQLASSVASTR 19 0 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 0 ANNSQEPS(0.999)PQLAS(0.001)SVASTR;ANNSQEPS(1)PQLASSVASTR ; 264.66 5.03E-71 57476000 7088.7 6396.2 5823.1 6298.7 7200.4 5755.5 5283.8 4076.1 6780.3 7506.8 TRUE FALSE FALSE 6257.773332 6593.259341 6137.9144 6555.588211 6669.240837 5645.723427 5487.597936 4540.106748 6500.813164 7462.14922 0.83860201 0.883560372 0.822539756 0.878512077 0.893742626 0.756581417 0.735391075 0.608418113 0.871171692 1 12.86537549 -1.829698417 0.155944103 1.004385233 8.06E-32 0.68160502 0.057387859 20.63704902 0.259770354 0.12231119 4.532126873 0.014801359 1.829698417 -1.004385233 VISHDRDS(ph)PPPPPPPPPPPQPQPSLKR ddPTM_HeLa_CUDC101_4h_R1 1 VISHDRDSPPPPPPPPPPPQPQPSLKR 27 2 Q69YN4-3;Q69YN4;Q69YN4-4;Q69YN4-2 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 VIS(0.252)HDRDS(0.748)PPPPPPPPPPPQPQPSLKR 50.464 0.01134 27028000 2068.4 1863.4 1493.6 1655.8 2069.3 1563.9 1640.1 1336.8 2053.4 1844.8 TRUE FALSE FALSE 1825.945287 1920.809145 1574.348534 1723.330681 1916.651862 1534.071213 1703.359206 1488.975908 1968.757983 1833.827048 0.995702016 1.047432007 0.85850437 0.939745481 1.045165008 0.836540837 0.928854882 0.81195002 1.073578877 1 10.84064187 -1.828643582 0.318592926 1.003146395 1.94E-09 0.461677857 0.065264176 19.75558936 0.410307972 0.019793764 10.6246576 0.014837353 1.828643582 -1.003146393 NATDLQNSSMS(ph)EEELTK ddPTM_HeLa_CUDC101_4h_R1 2 NATDLQNSSMSEEELTK 17 0 Q5QNY5;P40855;H0YJ60;P40855-5 Q5QNY5 PEX19 Peroxisomal biogenesis factor 19 1 0 NATDLQNSSMS(0.999)EEELTK;NATDLQNS(0.136)S(0.1)MS(0.759)EEELT(0.006)K ; 297.7 6.14E-123 100359000 5244.8 4397.9 4250.4 4076.4 5203.5 4599 3820.1 4051.9 4703.6 4859.5 TRUE FALSE FALSE 4630.012495 4533.394086 4480.189481 4242.653212 4819.648172 4511.281737 3967.442537 4513.151918 4509.715617 4830.595478 0.958476551 0.938475206 0.927461118 0.878287828 0.997733756 0.933897644 0.821315416 0.934284797 0.933573436 1 12.23798533 -1.824047429 0.05659012 1.144079531 0.555235837 0.11258881 0.046964088 204.6117845 1.020110772 2.561664919 10.62926188 0.014995211 1.824047429 -0.588843693 TEDSIRDYEDGMEVDT(ph)TPTVAGQFEDADVDH ddPTM_HeLa_CUDC101_4h_R1 2 TEDSIRDYEDGMEVDTTPTVAGQFEDADVDH 31 1 P54105;E9PMI6;J3KN38 P54105 CLNS1A Methylosome subunit pICln 1 0 T(0.001)EDS(0.003)IRDY(0.003)EDGMEVDT(0.522)T(0.434)PT(0.037)VAGQFEDADVDH;TEDSIRDYEDGMEVDT(0.445)T(0.445)PT(0.111)VAGQFEDADVDH ; 97.691 3.68E-09 12150600 1906.76 1380.46 1640.55 1448.24 1884.62 2151.47 1823.64 2850.66 2322.63 1913.31 TRUE FALSE FALSE 1683.252483 1422.990336 1729.243095 1507.305487 1745.595337 2110.434294 1893.978406 3175.167612 2226.890208 1901.929547 0.885023573 0.748182465 0.909204601 0.792513839 0.917802313 1.109628008 0.995819434 1.669445441 1.170858412 1 10.89324809 -1.820923918 1.111364284 0.917285303 199.9999986 0.758022068 0.122497937 121.3826977 0.725694678 0.015015721 60919.68366 0.015103447 1.820923918 199.0827133 ELDPSLVSANDS(ph)PSGMQTR ddPTM_HeLa_CUDC101_4h_R1 3 ELDPSLVSANDSPSGMQTR 19 0 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 ELDPS(0.001)LVS(0.164)ANDS(0.79)PS(0.039)GMQT(0.005)R;ELDPS(0.001)LVS(0.368)ANDS(0.616)PS(0.015)GMQTR;ELDPSLVS(0.001)ANDS(0.7)PS(0.247)GMQT(0.052)R ;; 90.872 0.0033265 71389000 8440 6624.7 6079.9 6024.9 7584.7 7281.2 6021 4222.2 7140.8 8069 TRUE FALSE FALSE 7450.675994 6828.799155 6408.597785 6270.621464 7025.191792 7142.323241 6253.231987 4702.838181 6846.453202 8021.005229 0.928895541 0.851364506 0.798976887 0.781775013 0.875849297 0.890452386 0.77960702 0.586315312 0.853565483 1 12.96956734 -1.819019495 0.141560057 1.054694426 1.27E-13 0.433249007 0.079114906 26.15439882 0.302593591 0.193157071 5.407493465 0.015169823 1.819019495 -1.054694426 IAS(ph)DEEIQGTK ddPTM_HeLa_CUDC101_4h_R1 4 IASDEEIQGTK 11 0 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 IAS(1)DEEIQGTK;IAS(1)DEEIQGTK;IAS(1)DEEIQGTK;IAS(1)DEEIQGTK ;;; 217.46 1.89E-24 920010000 9585.1 9302.5 9413.1 9815.2 10725.7 10546.1 13346.4 12465.2 8628.4 8562.4 TRUE FALSE FALSE 8461.549108 9589.098999 9922.000659 10215.50628 9934.48648 10344.95071 13861.17512 13884.18798 8272.7337 8511.470464 0.994134814 1.126608973 1.165721094 1.200204633 1.167188034 1.215412866 1.62852884 1.631232587 0.971951173 1 13.05519268 -1.814190199 0.33445945 0.984383755 5.510970269 0.888606309 0.075435048 6.24706622 0.131556883 0.023747667 16.19256093 0.01533945 1.814190199 4.526586513 DGDGVPGGGPLS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 DGDGVPGGGPLSPAR 15 0 M0QZR4;Q92888-2;Q92888;Q92888-3 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 1 0 DGDGVPGGGPLS(1)PAR;DGDGVPGGGPLS(1)PAR ; 160.03 6.61E-05 52148000 5540.3 5141.9 4443.5 4897.4 5112.8 4717 4618.9 3697.8 5153.4 5223 TRUE FALSE FALSE 4890.874433 5300.315844 4683.729051 5097.13714 4735.63893 4627.031084 4797.05252 4118.742605 4940.974671 5191.933364 0.9420141 1.020875168 0.902116557 0.981741633 0.912114736 0.891196161 0.923943391 0.793296508 0.95166373 1 12.34205615 -1.81077065 0.33770209 0.980005086 2.38E-12 0.635757605 0.03707669 13.81933004 0.291603825 0.010971236 7.857859823 0.015460707 1.81077065 -0.980005086 GTQS(ph)TEGS(ph)PVSK ddPTM_HeLa_CUDC101_4h_R1 1 GTQSTEGSPVSK 12 0 A0A087WXK8;Q9H4H8-2;Q9H4H8 A0A087WXK8 FAM83D Protein FAM83D 2 0 GT(0.172)QS(0.792)T(0.036)EGS(0.911)PVS(0.089)K 121.92 0.029363 97517000 6626.5 5906.6 5213 5872.2 5712.2 5208.2 5432.7 4022.3 7330.3 6229.9 TRUE FALSE FALSE 5849.751715 6088.575345 5494.830548 6111.693698 5290.822386 5108.862262 5642.241059 4480.182373 7028.141931 6192.844278 0.944598548 0.983162998 0.887287053 0.986896073 0.85434449 0.824962171 0.911090414 0.723445023 1.134881101 1 12.59638645 -1.806642274 0.257655968 0.991242893 6.45E-15 0.612212181 0.06663842 12.79808983 0.232936334 0.023038112 5.167444109 0.015608376 1.806642274 -0.991242893 REDEGEPGDEGQLEDEGS(ph)QEKQGR ddPTM_HeLa_CUDC101_4h_R1 2 REDEGEPGDEGQLEDEGSQEKQGR 24 2 Q969E4 Q969E4 TCEAL3 Transcription elongation factor A protein-like 3 1 0 REDEGEPGDEGQLEDEGS(1)QEKQGR;REDEGEPGDEGQLEDEGS(1)QEKQGR ; 63.044 0.0019315 11146000 2365.88 1851.97 2393.7 1917.04 2640.8 2605 2549.89 4478.8 2493.74 2109.97 TRUE FALSE FALSE 2088.555133 1909.027001 2523.110663 1995.225177 2445.993445 2555.313965 2648.240111 4988.648488 2390.946982 2097.419805 0.995773535 0.910178781 1.202959301 0.951276026 1.166191642 1.218313072 1.262618054 2.37846924 1.139946794 1 11.03439993 -1.800484003 0.983008621 1.010944026 199.9999998 0.930404144 0.106190676 35.31913185 0.298272098 0.013809057 15517.00977 0.015831279 1.800484003 198.9890558 up KQHY(ph)LS(ph)SEDEPDDNPDVLDSR ddPTM_HeLa_CUDC101_4h_R1 1 KQHYLSSEDEPDDNPDVLDSR 21 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 2 0 KQHY(0.915)LS(0.915)S(0.171)EDEPDDNPDVLDSR 66.308 0.0071411 13431000 2182.7 1620 1520.8 1540.5 2177.6 1797.2 1811.4 2238.4 1868.6 1984.8 TRUE FALSE FALSE 1926.847215 1669.91028 1603.019048 1603.328249 2016.962786 1762.921404 1881.266305 2493.210408 1791.575517 1972.994321 0.976610624 0.846383723 0.812480315 0.812637032 1.022285145 0.893525838 0.953508221 1.263668314 0.908048998 1 10.94617109 -1.794144472 14.6005056 0.964582691 1.318218287 0 0.127570463 0 0 0.016322792 0 0.016064068 1.794144472 0.353635596 QEQINTEPLEDTVLS(ph)PTKK ddPTM_HeLa_CUDC101_4h_R1 2 QEQINTEPLEDTVLSPTKK 19 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 0 QEQINTEPLEDTVLS(0.951)PT(0.049)KK;QEQINTEPLEDT(0.001)VLS(0.723)PT(0.275)KK ; 83.221 0.0028582 39228000 3876.9 3563.9 3613.5 3054.6 3718.7 3019.9 2551 2679.24 3923.8 4103.3 TRUE FALSE FALSE 3422.455659 3673.699535 3808.85674 3179.179791 3444.37891 2962.300439 2649.392925 2984.233852 3762.059303 4078.893389 0.839064749 0.900660837 0.933796591 0.779422134 0.844439553 0.726251009 0.649537184 0.731628304 0.922323519 1 11.99396208 -1.784777689 0.11956133 1.062441291 3.57E-13 0.733061227 0.053934381 28.55541451 0.283014937 0.275836069 4.965053896 0.016414298 1.784777689 -1.062441291 (ac)SCINLPTVLPGS(ph)PSKTR ddPTM_HeLa_CUDC101_4h_R1 1 SCINLPTVLPGSPSKTR 17 1 K7ERV3;P04183;K7ENW5;K7ES52;K7ERJ1 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 0 S(0.001)CINLPT(0.063)VLPGS(0.615)PS(0.211)KT(0.11)R 62.438 0.003962 21022000 433.15 707.73 369.11 423.21 815.31 715.04 655.46 811.98 598.86 335.5 TRUE FALSE FALSE 382.3768136 729.5343224 389.0652031 440.4703331 755.1662056 701.4018033 680.7413118 904.4125211 574.1747373 333.5044311 1.146541929 2.187480149 1.166596803 1.320733076 2.264336348 2.10312589 2.041176213 2.711845591 1.721640506 1 8.38156212 -1.782694336 0.191495315 0.842604511 7.147128812 0.439193265 0.412897371 15.97647278 0.233564768 0.375904257 28.23407466 0.016493228 1.782694336 6.304524301 TPVEPEVAIHR ddPTM_HeLa_CUDC101_4h_R1 4 TPVEPEVAIHR 11 0 E5RIP1;E5RJX2;P60866;P60866-2 E5RIP1 RPS20 40S ribosomal protein S20 0 0 ;;; ;;; 161.67 9.42E-05 44109800 22708.7 20299.2 20062.4 19240.5 18672.9 20317.9 18315.1 17732.7 19850.9 23159.3 FALSE FALSE TRUE 20046.82061 20924.59429 21147.03403 20025.21075 17295.43737 19930.36991 19021.51954 19751.31889 19032.6375 23021.54745 0.870785105 0.908913457 0.918575698 0.869846425 0.751271712 0.86572677 0.826248521 0.857949229 0.826731458 1 14.49069719 -13.52287875 0.145345461 1.543664709 0.801054963 0 0.067346961 30.51423241 0.305251695 4.720562815 0.105137994 3.00E-14 13.52287875 -0.742609746 NS(ph)PGSQVASNPR ddPTM_HeLa_CUDC101_4h_R1 4 NSPGSQVASNPR 12 0 Q9H0D6;Q9H0D6-2 Q9H0D6 XRN2 5-3 exoribonuclease 2 1 0 NS(0.997)PGS(0.003)QVASNPR;NS(1)PGSQVASNPR;NS(0.992)PGS(0.008)QVASNPR;NS(0.999)PGS(0.001)QVASNPR ;;; 207.66 2.59E-23 645520000 11951.8 10577.8 10192.4 10001.4 11005.7 10174.9 9246.1 7920.4 11532.6 12235.9 TRUE FALSE FALSE 10550.82812 10903.68948 10743.43197 10409.30032 10193.83144 9980.830735 9602.725174 8822.026321 11057.22135 12163.12032 0.867444195 0.896454955 0.883279265 0.855808382 0.838093447 0.820581436 0.789495205 0.725309467 0.909077692 1 13.57022576 -1.773581591 0.046264616 1.376159129 8.84E-12 0.7837161 0.032580261 96.33601704 0.391170515 3.18862213 10.37572062 0.01684296 1.773581591 -1.376159129 TQAEK(ac)GDTENGKEK ddPTM_HeLa_CUDC101_4h_R1 1 TQAEKGDTENGKEK 14 2 Q9H981 Q9H981 ACTR8 Actin-related protein 8 0 1 TQAEK(1)GDTENGKEK 123.63 0.0068549 1048600 948.48 632.55 1091.2 1021.2 1105.2 824.63 1035 581.82 1123.6 1086.5 FALSE TRUE FALSE 837.3006122 652.0381157 1150.193573 1062.84895 1023.671598 808.9015567 1074.920297 648.052037 1077.284732 1080.03745 0.775251462 0.603718062 1.064957121 0.984085274 0.947811206 0.748956952 0.99526206 0.600027376 0.997451276 1 10.07686562 -9.474063921 1.268475672 0.998348983 0.842448947 0.146506849 0.152728976 0.749328986 2.192518697 0.098330024 0.025250284 3.36E-10 9.474063921 -0.155900036 TQARPVGVK(ac)IPTCK ddPTM_HeLa_CUDC101_4h_R1 2 TQARPVGVKIPTCK 14 2 G3V438;H0YJG7;O95433-2;O95433 G3V438 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 0 1 ; TQARPVGVK(1)IPTCK;TQARPVGVK(1)IPTCK 141.34 0.0032318 4509800 2746.72 2025.91 2697.51 2335 2845.9 2381.04 2288.27 3697.5 2138.02 1231.2 FALSE TRUE FALSE 2424.753645 2088.325886 2843.34555 2430.231393 2635.963627 2335.625629 2376.52934 4118.408454 2049.889911 1223.876768 1.981207348 1.706320392 2.323228633 1.985683083 2.153781897 1.908383009 1.941804439 3.365051583 1.67491529 1 10.25724258 -9.364120254 0.1630531 2.59E-24 2.745870481 0.447238663 0.420285763 6.527231437 0.299534353 4.286105859 1.1487617 4.32E-10 9.364120254 2.745870481 TDVSNFDEEFTGEAPT(ph)LSPPRDAR ddPTM_HeLa_CUDC101_4h_R1 2 TDVSNFDEEFTGEAPTLSPPRDAR 24 1 Q16512;Q16512-2 Q16512 PKN1 Serine/threonine-protein kinase N1 1 0 TDVSNFDEEFT(0.002)GEAPT(0.499)LS(0.499)PPRDAR;TDVSNFDEEFT(0.001)GEAPT(0.5)LS(0.5)PPRDAR ; 82.475 9.57E-05 67963000 1169.02 994.21 989.29 1017.18 1120.61 1114.35 984.48 1155.12 1132.74 1005.6 TRUE FALSE FALSE 1031.989248 1024.840432 1042.77401 1058.664997 1037.944833 1093.09563 1022.451723 1286.614192 1086.047978 999.6186465 1.032382951 1.025231407 1.043171827 1.059068877 1.038340808 1.093512645 1.022841788 1.287105034 1.086462304 1 9.965234003 -1.771818445 1.294278249 1.025043046 200 0.796132054 0.035070154 288.5835993 0.813713505 0.004479841 170109.1229 0.016911478 1.771818445 198.974957 SS(ph)PEQPRPSTSK ddPTM_HeLa_CUDC101_4h_R1 1 SSPEQPRPSTSK 12 1 P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-4;H3BVD2;P29590-11;P29590-12;P29590-13;H3BT57;H3BUJ5;H3BRN3;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 1 0 S(0.18)S(0.82)PEQPRPSTSK 67.136 0.035154 1307000000 1557.5 1416.9 1412 1135 1619.9 1153.5 1048.1 1063.4 1642.7 1573.3 TRUE FALSE FALSE 1374.932211 1460.55301 1488.336991 1181.290206 1500.403204 1131.498909 1088.525568 1184.453158 1574.987211 1563.941942 0.879145302 0.933892091 0.951657444 0.755328682 0.959372701 0.723491633 0.696014052 0.757351105 1.007062455 1 10.61097124 -1.753464091 0.169274943 1.008546467 5.34E-12 0.639320638 0.068986144 22.41559134 0.294927634 0.10790252 5.46718974 0.017641516 1.753464091 -1.008546467 WCNVQSTQDEFEELTMS(ph)QK ddPTM_HeLa_CUDC101_4h_R1 4 WCNVQSTQDEFEELTMSQK 19 0 D6RCP9;D6RFG8;P27707 D6RCP9 DCK Deoxycytidine kinase 1 0 WCNVQSTQDEFEELT(0.006)MS(0.994)QK;WCNVQSTQDEFEELT(0.012)MS(0.988)QK;WCNVQSTQDEFEELT(0.026)MS(0.974)QK;WCNVQSTQDEFEELT(0.04)MS(0.96)QK ;;; 174.47 7.27E-08 33773400 7926.8 6122.2 6457.2 6491.8 8447.7 8419.5 13514.3 22761 6964.9 2655.93 TRUE FALSE FALSE 6997.63252 6310.817725 6806.295764 6756.563664 7824.530001 8258.912065 14035.55108 25352.02024 6677.803874 2640.13241 2.650485443 2.390341371 2.578013034 2.559176062 2.963688477 3.128218885 5.316229983 9.602556349 2.529344304 1 11.36639457 -1.752776013 0.621841457 1.87966026 200 0.948599158 0.516190511 11.58126359 0.210741921 0.11901197 2967.29201 0.017669489 1.752776013 198.1203397 up HELS(ph)PPQKR ddPTM_HeLa_CUDC101_4h_R1 2 HELSPPQKR 9 1 C9JUL9;Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5 C9JUL9;Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 HELS(1)PPQKR;HELS(1)PPQKR ; 79.07 0.024334 735560000 7896.2 6181 6514.8 6681.7 6452.7 6161.6 5582.4 4733.1 7135.2 7663.4 TRUE FALSE FALSE 6970.619406 6371.429284 6867.009794 6954.208607 5976.697177 6044.077746 5797.715038 5271.896972 6841.084036 7617.817756 0.915041503 0.836385102 0.901440546 0.912887237 0.784568149 0.793413277 0.761072951 0.692048188 0.89803724 1 12.89516206 -1.751442543 0.153435563 1.03500528 1.76E-20 0.750339944 0.0436057 11.83472885 0.143760438 0.071028782 2.639346345 0.017723825 1.751442543 -1.03500528 YSVLNNDDYFADVS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 4 YSVLNNDDYFADVSPLR 17 0 Q1ED39;H3BMC9 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 0 YSVLNNDDYFADVS(1)PLR;YSVLNNDDYFADVS(1)PLR;YSVLNNDDYFADVS(1)PLR;YSVLNNDDYFADVS(1)PLR ;;; 241.98 2.98E-44 123802000 7885.9 6814.1 6269.6 5626.64 6358 6514.4 6029.95 4299.09 7547.7 7411.7 TRUE FALSE FALSE 6961.526756 7024.034344 6608.553541 5856.1187 5888.983007 6390.148674 6262.527191 4788.481028 7236.580611 7367.614879 0.94488201 0.953366111 0.896973261 0.79484593 0.799306574 0.867329357 0.850007403 0.649936391 0.982214832 1 12.84698194 -1.748029808 0.173788417 1.028228881 1.16E-16 0.753808555 0.050137545 16.29635896 0.218550261 0.075410942 4.183709086 0.01786365 1.748029808 -1.028228881 VDDSPSTSGGSS(ph)DGDQR ddPTM_HeLa_CUDC101_4h_R1 2 VDDSPSTSGGSSDGDQR 17 0 F8WF15;F8W8F0;C9J180;Q96LR5 F8WF15 UBE2E2 Ubiquitin-conjugating enzyme E2 E2 1 0 VDDSPSTSGGS(0.045)S(0.955)DGDQR;VDDSPSTSGGS(0.13)S(0.87)DGDQR ; 240.5 6.30E-44 42599000 5235.2 4437.5 4320.6 3789.5 4688.9 4483.1 3728.8 3368.4 5105.6 5238 TRUE FALSE FALSE 4621.537792 4574.214115 4554.184705 3944.05219 4343.009189 4397.592337 3872.621065 3751.84504 4895.145007 5206.844143 0.88758904 0.878500295 0.874653548 0.757474601 0.834096253 0.844579215 0.743755903 0.720560274 0.940136649 1 12.34619351 -1.738339205 0.062799687 1.276069791 4.09E-10 0.802163654 0.037295553 59.4042823 0.321938565 1.4408669 7.122283498 0.018266729 1.738339205 -1.27606979 S(ph)MVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR ddPTM_HeLa_CUDC101_4h_R1 2 SMVWPGDGLVPDTAEPHVAPSPTLPSTEDVIR 32 0 F8VXI9;Q14161-6;Q14161-4;Q14161-3;Q14161;R4GNG3;F8WAK2;Q14161-11;Q14161-7;Q14161-9;Q14161-10;Q14161-8;Q14161-5 F8VXI9 GIT2 ARF GTPase-activating protein GIT2 1 0 S(0.988)MVWPGDGLVPDT(0.011)AEPHVAPSPTLPSTEDVIR;S(0.993)MVWPGDGLVPDT(0.007)AEPHVAPSPTLPSTEDVIR ; 68.219 1.59E-05 18546100 780.44 766.45 748.98 685.37 905.2 753.36 705.46 444.42 491.25 690.86 TRUE FALSE FALSE 688.9580063 790.063416 789.4721243 713.322351 838.4251994 738.9909132 732.6698285 495.0109764 471.0004671 686.750734 1.003214081 1.150436944 1.149575945 1.038691793 1.220858105 1.076068618 1.066864282 0.720801525 0.685839044 1 9.423642737 -1.733369133 14.23179576 1.031720374 0.123261803 0 0.168858023 0 0 0.016497901 0 0.018476975 1.733369133 -0.908458571 DLIEDSSVQKDGLNQTTIPVS(ph)PPSTTKPSR ddPTM_HeLa_CUDC101_4h_R1 1 DLIEDSSVQKDGLNQTTIPVSPPSTTKPSR 30 2 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 DLIEDSSVQKDGLNQT(0.006)T(0.016)IPVS(0.908)PPS(0.02)T(0.02)T(0.02)KPS(0.01)R 54.465 0.0029434 14531000 1029.7 1357.2 1258.8 1186.6 1862.8 1485.8 1410.2 1956 1602.1 843.21 TRUE FALSE FALSE 909.0001269 1399.013723 1326.854536 1234.994677 1725.384955 1457.460841 1464.591886 2178.663134 1536.06076 838.1945494 1.084473918 1.669079958 1.582991128 1.473398602 2.058454038 1.738809733 1.747317359 2.599233239 1.832582616 1 9.71114133 -1.730975747 0.175412136 0.803994503 6.04198532 0.325373483 0.356958141 14.30940334 0.192280851 0.326847723 18.94710726 0.018579082 1.730975747 5.237990817 DGDSYDPYDFSDT(ph)EEEMPQVHTPK ddPTM_HeLa_CUDC101_4h_R1 6 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 A0A499FHX9;J3KQ69;Q7Z6P5;P25205;P25205-2 A0A499FHX9;P25205 MCM3 DNA replication licensing factor MCM3 1 0 DGDSYDPY(0.007)DFS(0.174)DT(0.819)EEEMPQVHTPK;DGDSYDPYDFS(0.098)DT(0.901)EEEMPQVHTPK;DGDSYDPY(0.001)DFS(0.051)DT(0.947)EEEMPQVHTPK;DGDSYDPYDFS(0.031)DT(0.794)EEEMPQVHT(0.175)PK;DGDSYDPYDFS(0.342)DT(0.658)EEEMPQVHTPK;DGDSYDPYDFS(0.041)DT(0.959)EEEMPQVHTPK ;;;;; 127.01 1.65E-08 740244500 27781.1 25564.2 22927.2 23391.6 26157.4 22826 20962.3 17741.5 26582.5 27274.1 TRUE FALSE FALSE 24524.64157 26351.8027 24166.71378 24345.61056 24227.82071 22390.63208 21770.82293 19761.12065 25486.7581 27111.87244 0.904572033 0.971965428 0.891370149 0.897968615 0.89362403 0.825860779 0.802999608 0.728873326 0.940058941 1 14.72663713 -1.722584341 0.222731721 0.985012239 8.29E-15 0.877712493 0.026878297 9.280069823 0.148129921 0.022601465 3.113777194 0.018941556 1.722584341 -0.985012239 T(ph)LSSSAQEDIIR ddPTM_HeLa_CUDC101_4h_R1 2 TLSSSAQEDIIR 12 0 Q9H788-2;Q9H788 Q9H788-2 SH2D4A SH2 domain-containing protein 4A 1 0 T(0.782)LS(0.204)S(0.003)S(0.01)AQEDIIR;T(0.786)LS(0.043)S(0.043)S(0.129)AQEDIIR ; 190.57 1.78E-10 127011300 3765.8 3082.6 2507 3193.8 3889.7 4527.1 5259.7 9845.5 2971.7 2621 TRUE FALSE FALSE 3324.378633 3177.571252 2642.536003 3324.056969 3602.76458 4440.75311 5462.568391 10966.27192 2849.205268 2605.410175 1.275952118 1.21960499 1.014249514 1.275828658 1.382801301 1.704435314 2.096625108 4.209038572 1.093572634 1 11.3472948 -1.719577122 0.791539809 1.136755527 200 0.984286037 0.115018319 11.80268281 0.143738782 0.021563844 4073.554614 0.01907317 1.719577122 198.8632445 up EANANGS(ph)SPEPVK ddPTM_HeLa_CUDC101_4h_R1 1 EANANGSSPEPVK 13 0 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 EANANGS(0.5)S(0.5)PEPVK 129.76 0.0011824 225480000 6316.9 4966.8 5511.9 5283.4 5104 5119.7 4730.6 4372 5682.1 6216.7 TRUE FALSE FALSE 5576.442558 5119.821221 5809.889987 5498.879889 4727.488089 5022.050253 4913.060827 4869.690808 5447.881433 6179.722792 0.90237746 0.828487198 0.94015382 0.889826304 0.765000025 0.812665943 0.795029323 0.788011206 0.881573756 1 12.59332641 -1.719271768 0.047363098 1.381039953 5.74E-07 0.441773411 0.05327137 136.8838801 0.562935437 4.408678957 14.91832272 0.019086585 1.719271768 -1.381039379 TQLASWSDPTEETGPVAGILDTETLEK ddPTM_HeLa_CUDC101_4h_R1 1 TQLASWSDPTEETGPVAGILDTETLEK 27 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 0 0 128.89 5.20E-11 9728100 1418.9 1247.6 1344.6 1572.7 1521.7 1616.8 1359.7 1461.4 1399.2 1685.6 FALSE FALSE TRUE 1252.578693 1286.037077 1417.293143 1636.841504 1409.447223 1585.962234 1412.144084 1627.759869 1341.524384 1675.573976 0.747552009 0.767520322 0.845855309 0.976884057 0.841172782 0.946518779 0.842782297 0.971464043 0.800635724 1 10.71043967 TQLEELEDELQATEDAK ddPTM_HeLa_CUDC101_4h_R1 5 TQLEELEDELQATEDAK 17 0 P35579;P35579-2;P35580;P35580-5;P35580-2;P35580-3;P35580-4;P35749-4;P35749-3;P35749;P35749-2 P35579;P35580;P35749-4 MYH9;MYH10;MYH11 Myosin-9;Myosin-10;Myosin-11 0 0 ;;;; ;;;; 282.73 1.04E-102 335027000 16269.2 13453.33 13614.68 13304.31 13914.2 14141.83 13389.3 12235.04 14770.12 15386.82 FALSE FALSE TRUE 14362.14904 13867.81115 14350.73078 13846.91727 12887.77719 13872.09815 13905.72979 13627.8275 14161.2894 15295.29851 0.938991091 0.906671494 0.938244571 0.905305461 0.842597297 0.906951776 0.909150598 0.890981467 0.925858975 1 13.90080064 -8.023191776 0.406667876 1.006320856 0.886978997 0.351504481 0.030684078 0.38318475 0.159289041 0.018615091 0.010520182 9.48E-09 8.023191776 -0.119341859 GPGGSQGSQGPS(ph)PQGAR ddPTM_HeLa_CUDC101_4h_R1 4 GPGGSQGSQGPSPQGAR 17 0 Q96MG7 Q96MG7 NDNL2 Melanoma-associated antigen G1 1 0 GPGGSQGSQGPS(1)PQGAR;GPGGSQGS(0.001)QGPS(0.999)PQGAR;GPGGSQGSQGPS(1)PQGAR;GPGGSQGSQGPS(1)PQGAR ;;; 219.85 1.33E-32 69256400 3274.29 2481.99 2739.13 2805.41 2683.89 2651.57 2680.25 2031.18 2870.44 2880.48 TRUE FALSE FALSE 2890.48269 2558.45717 2887.215653 2919.826746 2485.904782 2600.99572 2783.62814 2262.401321 2752.119248 2863.346777 1.009476991 0.893519846 1.008336006 1.019725158 0.868181529 0.90837608 0.972158931 0.790124808 0.961154713 1 11.48348669 -1.698929576 0.31139411 1.005937437 4.27E-11 0.404654147 0.055435792 20.1347905 0.384700765 0.018518632 10.70879324 0.020001862 1.698929576 -1.005937437 EVDATS(ph)PAPSTSSTVK ddPTM_HeLa_CUDC101_4h_R1 1 EVDATSPAPSTSSTVK 16 0 H3BM18;X6RHM1;Q16666-3;Q16666-2;Q16666;Q16666-6 H3BM18 IFI16 Gamma-interferon-inducible protein 16 1 0 EVDAT(0.054)S(0.935)PAPS(0.003)T(0.003)S(0.003)S(0.001)TVK 150.12 0.00018074 95033000 8734.6 7434.5 7002.6 8237.4 8257.8 7187.2 6014.8 5353 6492.2 9102.8 TRUE FALSE FALSE 7710.743429 7663.548133 7381.181738 8573.356777 7648.638546 7050.116135 6246.792851 5962.363882 6224.588768 9048.656141 0.852142385 0.846926661 0.815721321 0.947472933 0.845278948 0.779134053 0.690355867 0.658922584 0.687902012 1 13.14348783 -1.684288963 0.13974602 1.026110624 6.00E-21 0.064726437 0.10251144 25.06341665 0.276748173 0.170605471 4.996867818 0.020687644 1.684288963 -1.026110624 TQSPEFEAQS(ph)SK ddPTM_HeLa_CUDC101_4h_R1 1 TQSPEFEAQSSK 12 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 TQS(0.007)PEFEAQS(0.581)S(0.411)K 104.94 0.0075238 18929000 2999.6 2667.7 2735.1 2313.6 2309.5 2663.7 2223.4 1834.3 2271.5 3105 TRUE FALSE FALSE 2647.991435 2749.888675 2882.967779 2407.958608 2139.132786 2612.894361 2309.157283 2043.109298 2177.867809 3086.531322 0.857918213 0.890931725 0.934047796 0.780150388 0.69305397 0.846547172 0.748139916 0.661943484 0.705603664 1 11.59177072 -1.673907272 0.089236243 1.145997007 1.16E-11 0.030807543 0.104581445 50.40671309 0.374793721 0.747344998 7.136135076 0.021188135 1.673907272 -1.145997007 KLLEDTLFPSSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 KLLEDTLFPSSKK 13 2 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 0 1 KLLEDTLFPSSK(1)K 145.52 0.0011489 2669100 989.72 1200 1162.4 1133.6 970.36 1512 1548.3 1615.7 548.16 711.83 FALSE TRUE FALSE 873.7065219 1236.970578 1225.24286 1179.833108 898.778476 1483.161119 1608.01845 1799.624757 525.5646128 707.5960035 1.23475333 1.748131097 1.731557066 1.667382379 1.270185913 2.096056382 2.272509231 2.543294123 0.742746723 1 9.466782089 -1 0.18996234 0.90808274 8.33372052 0.813828113 0.234732648 15.9364342 0.17814907 0.250596454 34.92890048 0.1 1 7.425637779 S(ph)CLWLR ddPTM_HeLa_CUDC101_4h_R1 1 SCLWLR 6 0 Q99956 Q99956 DUSP9 Dual specificity protein phosphatase 9 1 0 S(1)CLWLR 98.418 0.03145 27481000 1016.8 1151.5 2080.7 1439.3 1796.8 2079.5 2317.8 6811.6 3183.6 3779 TRUE FALSE FALSE 897.6122454 1186.97635 2193.188936 1498.000875 1664.253644 2039.837002 2407.198322 7587.005011 3052.370661 3756.52234 0.238947666 0.31597745 0.583834924 0.398773317 0.443030413 0.543012078 0.640805006 2.019688511 0.812552245 1 11.87518197 -1.658595148 8.351683319 0.641591504 1.113863157 0 0.493601426 0 0 0.066109203 0 0.0219485 1.658595148 0.472271653 APS(ph)PDPDLVQR ddPTM_HeLa_CUDC101_4h_R1 3 APSPDPDLVQR 11 0 A0A087WVB5;Q75MD7;A0A2R8Y8C6;Q8WXX7-2;Q8WXX7 A0A087WVB5 AUTS2 Autism susceptibility gene 2 protein 1 0 APS(1)PDPDLVQR;APS(1)PDPDLVQR;APS(1)PDPDLVQR ;; 145.81 6.77E-06 0 6938.5 6361.1 6223.7 5515.1 6551.3 5870.7 5534.8 4516.3 6574.9 6730.4 TRUE FALSE FALSE 6125.179548 6557.077951 6560.172048 5740.029616 6068.023651 5758.726179 5748.27909 5030.417336 6303.879839 6690.367281 0.915522166 0.980077427 0.980539897 0.857954336 0.906979153 0.860748885 0.859187373 0.751889564 0.942232253 1 12.7078697 -1.64525857 0.256427905 0.979767682 1.50E-15 0.760711539 0.035131619 13.07119898 0.220657916 0.02005596 5.275964763 0.022632964 1.64525857 -0.979767682 ETNLDS(ph)LPLVDTHSKR ddPTM_HeLa_CUDC101_4h_R1 1 ETNLDSLPLVDTHSKR 16 1 P08670 P08670 VIM Vimentin 1 0 ET(0.014)NLDS(0.986)LPLVDTHSKR 107.06 0.0011423 14453000 1061.2 766.75 1023 920.56 1123.6 919.85 1314.9 2130.2 891.29 680.23 TRUE FALSE FALSE 936.8077447 790.3726587 1078.306474 958.1044158 1040.714267 902.3053938 1365.616133 2372.693357 854.550649 676.1839617 1.385433251 1.168872235 1.594693952 1.416928632 1.539099306 1.334408157 2.019592612 3.508946517 1.263784262 1 9.401271987 -1.64101215 0.819275103 1.229476776 200 0.931477371 0.178069891 32.84886474 0.322935144 0.03414766 11851.91704 0.022855349 1.64101215 198.7705232 up RKSLVGT(ph)PYWMAPELISR ddPTM_HeLa_CUDC101_4h_R1 1 RKSLVGTPYWMAPELISR 18 2 O96013;O96013-2;O96013-4;M0R1R1;O96013-3 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 RKS(0.08)LVGT(0.502)PY(0.419)WMAPELISR 59.212 0.038939 23038000 3286.9 3298.7 2698.1 2879.5 3294.3 3368.5 3522.6 3376.9 2871.8 3955 TRUE FALSE FALSE 2901.614565 3400.329037 2843.967447 2996.938456 3051.286052 3304.251475 3658.467862 3761.312646 2753.423188 3931.475484 0.738047223 0.864898955 0.723384251 0.762293563 0.776117278 0.840460913 0.930558483 0.956717818 0.700353646 1 11.94085514 -1.638888866 1.043744024 0.846402314 39.51086725 0.125801795 0.093736481 890.7585629 4.27088195 0.017424972 81640.69147 0.022967363 1.638888866 38.66446494 NQYDNDVTVWS(ph)PQGR ddPTM_HeLa_CUDC101_4h_R1 2 NQYDNDVTVWSPQGR 15 0 P25786;P25786-2;B4DEV8 P25786 PSMA1 Proteasome subunit alpha type-1;Proteasome subunit alpha type 1 0 NQYDNDVTVWS(1)PQGR;NQYDNDVTVWS(1)PQGR ; 183.31 6.99E-17 7487100 3409.9 3418 2983.8 2927.9 3219.7 3040.9 2671 2176.8 3523 3539.4 TRUE FALSE FALSE 3010.196691 3523.304529 3145.113254 3047.312417 2982.189146 2982.899899 2774.021365 2424.598113 3377.780449 3518.347491 0.855571173 1.001408911 0.893917744 0.866120366 0.847610747 0.84781276 0.788444397 0.689129803 0.960047425 1 11.78068226 -1.637610783 0.21016531 0.97120358 8.55E-31 0.772909871 0.043461994 18.08673669 0.268788085 0.046871006 5.600070993 0.023035053 1.637610783 -0.97120358 GPGDLMGPQGLS(ph)PEEMAR ddPTM_HeLa_CUDC101_4h_R1 5 GPGDLMGPQGLSPEEMAR 18 0 Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0;A0A087WZX0 Q86UU0-3 BCL9L B-cell CLL/lymphoma 9-like protein 1 0 GPGDLMGPQGLS(1)PEEMAR;GPGDLMGPQGLS(1)PEEMAR;GPGDLMGPQGLS(1)PEEMAR;GPGDLMGPQGLS(1)PEEMAR;GPGDLMGPQGLS(1)PEEMAR ;;;; 171.52 2.65E-07 69582000 9087.1 7539.9 7346.2 7309.8 8611.1 7647.4 7155.4 6604.2 9491.7 8161.4 TRUE FALSE FALSE 8021.923913 7772.195382 7743.357793 7607.92524 7975.876309 7501.538586 7431.386175 7355.995433 9100.448109 8112.85563 0.988791651 0.958009823 0.954455268 0.937761694 0.98311577 0.924648352 0.916001284 0.906708534 1.121731795 1 12.9859941 -1.63533031 0.175495129 1.012079815 0.626561038 0.522742641 0.040778849 13.74266856 0.179305481 0.021603929 1.348876187 0.023156328 1.63533031 -0.385518777 AALHS(ph)PVSEGAPVIPPSSGLPLPTPDAR ddPTM_HeLa_CUDC101_4h_R1 1 AALHSPVSEGAPVIPPSSGLPLPTPDAR 28 0 E9PCV4;M0R344;Q9NRA0-4;Q9NRA0-2;Q9NRA0;Q9NRA0-5;Q9NRA0-3 E9PCV4 SPHK2 Sphingosine kinase 2 1 0 AALHS(0.58)PVS(0.418)EGAPVIPPS(0.001)S(0.001)GLPLPTPDAR 44.564 0.030603 2835000 272.57 143.83 128.85 287.03 267.32 301.71 247.11 299.46 246.59 322.31 TRUE FALSE FALSE 240.6197578 148.2612318 135.8160207 298.736324 247.6003362 295.9553844 256.6411155 333.5493159 236.4254558 320.3928858 0.751014671 0.462748202 0.423904608 0.932406234 0.772802229 0.923726454 0.801020019 1.041063428 0.73792355 1 8.323698303 -1.628249344 1.235460379 0.813245797 190.9113768 0.108498541 0.186649341 2793.40649 6.549995213 0.031862052 1502338.383 0.023536976 1.628249344 190.098131 LDIPTGT(ph)TPQRK ddPTM_HeLa_CUDC101_4h_R1 1 LDIPTGTTPQRK 12 1 P52732 P52732 KIF11 Kinesin-like protein KIF11 1 0 LDIPT(0.031)GT(0.716)T(0.253)PQRK 105.95 0.031799 60972000 4810.8 4575.6 4404.6 4200.4 4057.6 4318.3 3339.3 3122.6 4502.4 5181.9 TRUE FALSE FALSE 4246.885317 4716.568813 4642.725999 4371.710468 3758.278932 4235.935622 3468.09792 3478.064162 4316.809166 5151.077828 0.824465376 0.915646971 0.901311561 0.848698197 0.729610201 0.822339666 0.673276164 0.675210952 0.838039981 1 12.33065862 -1.62466951 0.113030838 1.06527401 2.48E-15 0.583046069 0.064544402 33.94431269 0.308343683 0.331179314 5.601508584 0.02373179 1.62466951 -1.06527401 ANNS(ph)QEPS(ph)PQLASSVASTR ddPTM_HeLa_CUDC101_4h_R1 2 ANNSQEPSPQLASSVASTR 19 0 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 2 0 ANNS(1)QEPS(0.999)PQLAS(0.001)SVASTR;ANNS(0.999)QEPS(0.995)PQLAS(0.005)S(0.001)VASTR ; 156.08 0.00024533 15131800 4751.7 4133 3888.6 3981.8 4716.9 3997.9 3384.4 2822 4736.8 4876.9 TRUE FALSE FALSE 4194.712929 4260.332831 4098.829478 4144.195015 4368.943684 3921.646718 3514.937442 3143.245073 4541.547099 4847.891982 0.865265345 0.878801105 0.845486965 0.854844751 0.901204833 0.808938552 0.725044505 0.648373579 0.936808641 1 12.24314184 -1.622180831 0.154273149 1.011483422 7.31E-24 0.811330995 0.041570146 18.97715258 0.223250495 0.101698492 4.190982265 0.023868173 1.622180831 -1.011483422 DRPGS(ph)PESPLLDAPFSR ddPTM_HeLa_CUDC101_4h_R1 2 DRPGSPESPLLDAPFSR 17 1 A0A2R8Y5P9;Q8TF72 A0A2R8Y5P9 SHROOM3 Protein Shroom3 1 0 DRPGS(0.875)PES(0.124)PLLDAPFS(0.001)R;DRPGS(0.998)PES(0.002)PLLDAPFSR ; 97.662 0.0022417 91522000 6237.3 5649.1 4901.9 5869.7 5687.4 6286.9 5199.7 6254.9 5100.3 5402.2 TRUE FALSE FALSE 5506.173149 5823.142075 5166.911541 6109.091737 5267.851833 6166.987857 5400.254171 6966.932533 4890.063475 5370.067474 1.025345245 1.084370374 0.962168831 1.137619176 0.980965669 1.148400441 1.005621288 1.297364059 0.910614904 1 12.3907245 -1.617972118 1.208118004 1.024895487 199.9788189 0.535932445 0.073509309 544.7908907 1.351799487 0.008375911 299709.1107 0.024100602 1.617972118 198.9539234 LTWHS(ph)CPEDEAQ ddPTM_HeLa_CUDC101_4h_R1 4 LTWHSCPEDEAQ 12 0 Q13185 Q13185 CBX3 Chromobox protein homolog 3 1 0 LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ ;;; 127.52 0.0020969 461608000 13669.1 12460.4 12166.8 12439.1 13541.7 13527.4 15481.2 24980.8 14972.8 10227.4 TRUE FALSE FALSE 12066.82882 12844.29015 12824.57401 12946.42026 12542.75577 13269.38738 16078.31507 27824.5133 14355.61485 10166.56697 1.186912834 1.263385191 1.261445879 1.273430874 1.23372578 1.305198443 1.581489122 2.736864212 1.412041537 1 13.31154497 -1.615853675 0.875671362 1.128324596 200 0.923683947 0.126888356 35.00386749 0.277705351 0.018459979 13639.34694 0.024218449 1.615853675 198.8716754 up ATTPPNQGRPDS(ph)PVYANLQELK ddPTM_HeLa_CUDC101_4h_R1 1 ATTPPNQGRPDSPVYANLQELK 22 1 Q1RLN5;Q8IWW6-3;Q8IWW6-2;Q8IWW6-4;Q8IWW6 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 0 ATTPPNQGRPDS(0.955)PVY(0.045)ANLQELK 88.573 0.00030652 29251000 1202.4 1277.1 1359.4 1313.5 1257.8 1556.5 1485.6 1724.9 1287.9 1379.5 TRUE FALSE FALSE 1061.456495 1316.445937 1432.893276 1367.070207 1165.0146 1526.812356 1542.90009 1921.255644 1234.812217 1371.294673 0.774054268 0.960002225 1.044920034 0.99691936 0.84957276 1.113409383 1.125141168 1.401052365 0.900471825 1 10.4213229 -1.614606561 0.560496104 0.904359761 12.128312 0.747562251 0.083142578 26.11367865 0.440181478 0.019281259 337.8232811 0.024288094 1.614606561 11.22395224 S(ph)VVSFDK ddPTM_HeLa_CUDC101_4h_R1 3 SVVSFDK 7 0 Q15424-2;Q15424;Q15424-4;Q15424-3 Q15424-2 SAFB Scaffold attachment factor B1 1 0 S(0.982)VVS(0.018)FDK;S(0.997)VVS(0.003)FDK;S(0.999)VVS(0.001)FDK ;; 94.692 0.028055 93340000 8057.8 6964.9 8178.9 8441.9 11444.4 10464 13955.3 19255.3 8367.1 8575.8 TRUE FALSE FALSE 7113.276899 7179.480314 8621.076074 8786.197171 10600.16941 10264.41663 14493.5606 21447.24552 8022.204597 8524.79076 0.834422463 0.84218845 1.011294742 1.030664261 1.243452152 1.204066695 1.700166139 2.515867676 0.941044164 1 13.05744871 -1.602835299 0.606799855 0.917086726 48.56099889 0.974854611 0.077784099 8.424614095 0.129531076 0.016112487 511.428113 0.02495541 1.602835299 47.64391216 up EWNGVVSESDS(ph)PVKRPGR ddPTM_HeLa_CUDC101_4h_R1 2 EWNGVVSESDSPVKRPGR 18 2 M0R0Q7;P18858-2;P18858;P18858-3;B4E135;F5GZ28;M0QY71;M0R1G7 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 0 EWNGVVSES(0.022)DS(0.978)PVKRPGR;EWNGVVSES(0.01)DS(0.989)PVKRPGR ; 85.176 0.0029144 245020000 15946 14557.9 14395.2 13253.4 14548.3 14390.9 12747.6 11214.8 14868.9 15115.7 TRUE FALSE FALSE 14076.83405 15006.41164 15173.44806 13793.93094 13475.10089 14116.41756 13239.2792 12491.4475 14255.99765 15025.79114 0.936844784 0.998710251 1.009826898 0.918016949 0.896798096 0.939479154 0.881103635 0.831333763 0.948768522 1 13.87515333 -1.598974647 0.32303441 0.980084959 1.02E-11 0.680005737 0.030715752 16.29307605 0.297988976 0.011374804 8.97284825 0.025178239 1.598974647 -0.980084959 MPTQSEEEKLSPS(ph)PTTEDPR ddPTM_HeLa_CUDC101_4h_R1 1 MPTQSEEEKLSPSPTTEDPR 20 1 E7EQY4;F6RRE2;E7EV10;Q9BTC8-2;Q9BTC8 E7EQY4 MTA3 Metastasis-associated protein MTA3 1 0 MPTQSEEEKLS(0.005)PS(0.848)PT(0.074)T(0.074)EDPR 85.387 0.0015081 19382000 1156 1130 1049.4 1277.3 1171.4 1411.9 1352.4 2127.4 1599.9 1260.3 TRUE FALSE FALSE 1020.495432 1164.813961 1106.133738 1329.393815 1084.988156 1384.97036 1404.562521 2369.574617 1533.951445 1252.80368 0.814569313 0.929765756 0.882926636 1.061134986 0.866048028 1.105496721 1.121135373 1.891417351 1.224414862 1 10.29094464 -1.595022714 0.959451174 0.916751124 200 0.81988217 0.124824238 67.42410419 0.390488699 0.013430184 29104.12308 0.025408398 1.595022714 199.0832489 QQPPEPEWIGDGEST(ph)SPSDK ddPTM_HeLa_CUDC101_4h_R1 1 QQPPEPEWIGDGESTSPSDK 20 0 Q8NE71;Q5STZ8;Q8NE71-2;A0A0G2JIC2 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 QQPPEPEWIGDGES(0.006)T(0.481)S(0.481)PS(0.031)DK 119.69 3.59E-05 46201000 4520.3 3839.8 3529.5 3357.7 3672.3 3735.2 3314.2 2701 3630 4455 TRUE FALSE FALSE 3990.437286 3958.099687 3720.315446 3494.641519 3401.401745 3663.957283 3442.029804 3008.470922 3480.369864 4428.501462 0.90108072 0.893778566 0.840084502 0.789125068 0.768070593 0.827358264 0.777244816 0.679342877 0.785902386 1 12.11260288 -1.593771129 0.088875688 1.160040097 1.12E-13 0.240650744 0.073382385 26.617731 0.193878003 0.388495126 3.797059942 0.025481728 1.593771129 -1.160040097 T(ph)SFSVGS(ph)DDELGPIR ddPTM_HeLa_CUDC101_4h_R1 1 TSFSVGSDDELGPIR 15 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 2 0 T(0.779)S(0.221)FS(0.055)VGS(0.945)DDELGPIR 97.767 0.025142 3292700 2709.6 2217.7 1855.3 1973.7 2318.3 2477.9 2207.4 1145.4 2102.1 2644.7 TRUE FALSE FALSE 2391.984795 2286.024708 1955.60313 2054.196017 2147.283628 2430.638186 2292.540157 1275.787706 2015.450548 2628.969207 0.909856528 0.869551725 0.743866883 0.781369372 0.816777778 0.924559398 0.872030053 0.485280582 0.766631478 1 11.36028153 -1.591286236 0.108586805 1.102215067 3.43E-16 0.117013915 0.125601385 64.04992878 0.557519247 0.676067161 10.50425681 0.025627944 1.591286236 -1.102215067 TAS(ph)PLEHILQTLFGK ddPTM_HeLa_CUDC101_4h_R1 2 TASPLEHILQTLFGK 15 0 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 T(0.09)AS(0.91)PLEHILQTLFGK;T(0.123)AS(0.877)PLEHILQTLFGK ; 233.14 3.68E-43 7441300 2404 2263.1 1920.98 1846.51 2225.8 2130.2 1855.85 1305.82 2328.1 2514.3 TRUE FALSE FALSE 2122.206764 2332.823429 2024.833989 1921.818659 2061.607168 2089.569984 1927.430756 1454.46927 2232.134733 2499.344832 0.849105228 0.933373978 0.810145909 0.768928975 0.824859036 0.836047094 0.771174402 0.581940216 0.893087942 1 11.28733425 -1.589002357 0.099725181 1.105315673 1.66E-14 0.643039302 0.063515013 43.65810848 0.352354766 0.521426041 6.603159913 0.025763072 1.589002357 -1.105315673 GYYS(ph)PYSVSGS(ph)GSTAGS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 3 0 GY(0.003)Y(0.003)S(0.983)PY(0.013)S(0.026)VS(0.224)GS(0.683)GS(0.117)T(0.178)AGS(0.77)R 82.709 0.011884 16083000 2766.1 2293.6 2205.2 2304.8 2930.2 3519.8 3925.2 7073.5 2152.5 2230.5 TRUE FALSE FALSE 2441.861951 2364.263097 2324.419782 2398.799706 2714.044984 3452.665679 4076.596279 7878.718648 2063.773039 2217.232887 1.101310541 1.06631248 1.048342642 1.081888926 1.224068522 1.557195773 1.838596344 3.553401492 0.930787673 1 11.1145446 -1.582042258 0.78354087 1.048244707 200 0.988349494 0.081309226 9.690028326 0.094880037 0.011797265 3337.221331 0.026179283 1.582042258 198.9517553 up S(ph)LIAQDHR ddPTM_HeLa_CUDC101_4h_R1 2 SLIAQDHR 8 0 E9PB39;H0YAN8;O15013-7;O15013-4;O15013-5;O15013-6;O15013 E9PB39 ARHGEF10 Rho guanine nucleotide exchange factor 10 1 0 S(1)LIAQDHR;S(1)LIAQDHR ; 106.16 0.0085746 14858200 4375.1 2063.38 2310.2 2840.5 2038.44 2807 2527.4 4388.8 2563.8 2207.6 TRUE FALSE FALSE 3862.25741 2126.950292 2435.0964 2956.347868 1888.068342 2753.461152 2624.882665 4888.403252 2458.119079 2194.469097 1.759996263 0.969232283 1.109651716 1.347181362 0.860375908 1.254727695 1.196135625 2.227601773 1.120142946 1 11.09965624 -1.56677835 7.635353574 1.317394376 1.499428911 0 0.394560395 0 0 0.054627019 0 0.027115752 1.56677835 0.182034535 DLPTIPGVTSPSSDEPPMEASQS(ph)HLRNSPEDKR ddPTM_HeLa_CUDC101_4h_R1 1 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 33 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 DLPTIPGVTSPS(0.004)S(0.004)DEPPMEAS(0.308)QS(0.375)HLRNS(0.308)PEDKR 69.782 2.89E-06 44693000 7280.1 4209.3 3772.3 3215.7 7804.4 6509.6 5498.1 7091.8 7291.9 5893 TRUE FALSE FALSE 6426.737714 4338.983544 3976.241949 3346.850145 7228.684961 6385.440226 5710.163559 7899.101846 6991.324796 5857.948174 1.097097059 0.740700227 0.678777249 0.571334885 1.233996059 1.090047238 0.974771949 1.348441743 1.193476724 1 12.51617971 -1.561056765 1.122836873 0.975860231 199.9058578 0.228631925 0.212505839 1143.565391 3.409069065 0.033208873 583465.8624 0.02747535 1.561056765 198.9299975 SQSST(ph)SPEGQALENR ddPTM_HeLa_CUDC101_4h_R1 2 SQSSTSPEGQALENR 15 0 O60239-2;O60239 O60239-2 SH3BP5 SH3 domain-binding protein 5 1 0 S(0.008)QS(0.005)S(0.141)T(0.423)S(0.423)PEGQALENR;S(0.001)QS(0.254)S(0.04)T(0.352)S(0.352)PEGQALENR ; 179.9 3.07E-07 23555000 3003 3096.9 3033.8 2520.9 3371.7 3199.3 2728.9 3373.7 3222.4 2937.9 TRUE FALSE FALSE 2650.992892 3192.311818 3197.816405 2623.713198 3122.976408 3138.278683 2834.154587 3757.748371 3089.571308 2920.42524 0.907742084 1.093098284 1.094983142 0.898401083 1.069356738 1.07459648 0.970459558 1.286712743 1.057918301 1 11.51196274 -1.554549204 1.157204742 0.981492784 199.9928997 0.438523522 0.079577389 608.0074827 1.559166173 0.012016838 320278.0353 0.027890147 1.554549204 199.0114069 DIKEES(ph)DEEEEDDEESGRLR ddPTM_HeLa_CUDC101_4h_R1 2 DIKEESDEEEEDDEESGRLR 20 2 Q96EV2;H7BXM6;A8MTF7;H7C0H2;Q96EV2-2 Q96EV2 RBM33 RNA-binding protein 33 1 0 DIKEES(1)DEEEEDDEESGRLR;DIKEES(1)DEEEEDDEESGRLR ; 65.949 0.0058258 102987000 5676.3 5879.8 5372.7 5523.2 5979.5 5772.2 5354.2 7533.6 6046.4 4924.2 TRUE FALSE FALSE 5010.932719 6060.949669 5663.164414 5748.459969 5538.404198 5662.104902 5560.713288 8391.194572 5797.164833 4894.910639 1.023702594 1.238214569 1.156949499 1.174374854 1.131461758 1.156733048 1.136019367 1.714269205 1.184324957 1 12.25706681 -1.554354302 1.017949035 1.057721829 199.9999989 0.738088244 0.095706768 175.4880402 0.75596253 0.015629377 80767.23146 0.027902666 1.554354302 198.9422771 TEKEPDATPPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 TEKEPDATPPSPR 13 1 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 0 TEKEPDATPPS(1)PR 175.27 1.28E-06 5316300 2082.9 1537.6 1551 2063.2 1815.4 1523.2 1793.5 1126.7 1497.1 2086.6 TRUE FALSE FALSE 1838.745619 1584.971633 1634.851752 2147.346214 1681.481559 1494.147498 1862.675896 1254.958974 1435.388904 2074.18881 0.886489027 0.76414048 0.788188492 1.035270368 0.810669477 0.720352694 0.8980262 0.605036035 0.692024225 1 11.01833151 -1.551864182 0.06016492 1.278563198 8.61E-10 0 0.137389944 202.9196281 1.018600784 4.809151143 23.44349365 0.028063111 1.551864182 -1.278563197 IDYLLPGPGPAHS(ph)PQPSKR ddPTM_HeLa_CUDC101_4h_R1 1 IDYLLPGPGPAHSPQPSKR 19 1 A0A0J9YYG8;Q8TDM6-4;Q8TDM6;Q8TDM6-3 A0A0J9YYG8 DLG5 Disks large homolog 5 1 0 IDYLLPGPGPAHS(0.948)PQPS(0.052)KR 69.088 0.021289 19495000 2018.1 1799.7 1601.6 1828.3 2115.4 2276.3 1922.1 2575.3 2374.8 2158.5 TRUE FALSE FALSE 1781.541377 1855.146624 1688.187341 1902.865977 1959.351156 2232.88337 1996.236041 2868.461742 2276.909739 2145.661146 0.8302995 0.864603727 0.786791215 0.886843657 0.91316896 1.040650512 0.930359411 1.336866144 1.061169301 1 11.06720654 -1.545825421 1.087469953 0.903849148 200 0.672328705 0.085760342 324.789973 1.058624822 0.012880104 160443.2679 0.028456048 1.545825421 199.0961509 VNGTTVSS(ph)PSTSLQR ddPTM_HeLa_CUDC101_4h_R1 1 VNGTTVSSPSTSLQR 15 0 A0A075B6G3;P11532-4;A0A087WTU7;A0A5H1ZRP8;A0A087WV90;P11532-11;P11532;P11532-8;P11532-14;P11532-6;P11532-15;P11532-5;P11532-7;P11532-12;P11532-2;P11532-17;P11532-3;A0A5H1ZRP7;A0A5H1ZRP9;A0A5H1ZRQ1;A0A5H1ZRQ8;H0Y304;P11532-16;P11532-9;P11532-13;A0A5H1ZRR9 A0A075B6G3 DMD Dystrophin 1 0 VNGTTVS(0.221)S(0.758)PS(0.02)TSLQR 252.01 4.70E-56 22775000 2270.8 1956.9 2126.7 1925.5 1955.1 1907.3 1549.4 1537.3 2121 2392.3 TRUE FALSE FALSE 2004.620266 2017.18977 2241.675835 2004.030213 1810.876168 1870.92143 1609.160877 1712.300018 2033.571482 2378.070493 0.842960826 0.848246415 0.942644821 0.842712703 0.761489692 0.786739264 0.676666601 0.720037536 0.855135072 1 11.21557577 -1.543191628 0.089546784 1.133280552 5.80E-14 0.58976941 0.059049299 45.28881262 0.328627848 0.62664378 6.351004742 0.028629145 1.543191628 -1.133280552 TTS(ph)SSDLTTSSSSSGPR ddPTM_HeLa_CUDC101_4h_R1 3 TTSSSDLTTSSSSSGPR 17 0 Q5QP82;A0A0A0MQT4 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 1 0 T(0.005)T(0.008)S(0.976)S(0.011)SDLTTSSSSSGPR;TTS(0.964)S(0.035)SDLTTSSSSSGPR;T(0.002)T(0.068)S(0.849)S(0.079)S(0.001)DLTTSSSSSGPR ;; 202.63 5.82E-33 20255000 4957.5 4484.9 4551.8 5380.7 5115.1 6289.8 5590.5 9646.6 4996.2 4956.8 TRUE FALSE FALSE 4376.389365 4623.074453 4797.884076 5600.148203 4737.769264 6169.832545 5806.127458 10744.72995 4790.254521 4927.316733 0.888189171 0.938253963 0.973731614 1.136551293 0.9615313 1.252168853 1.178354827 2.180645275 0.972183194 1 12.2665865 -1.53996053 0.901887372 0.960453852 199.9999998 0.930795995 0.095130852 48.79974746 0.305701893 0.01433617 19726.77537 0.028842936 1.53996053 199.039546 up TQVAGGQLSFK(ac)GK ddPTM_HeLa_CUDC101_4h_R1 2 TQVAGGQLSFKGK 13 1 P46060;B0QYT5;B0QYT4;B0QYT6 P46060 RANGAP1 Ran GTPase-activating protein 1 0 1 ; TQVAGGQLSFK(1)GK;TQVAGGQLSFK(1)GK 196.11 2.93E-11 2199400 1090.14 1179.67 894.35 934.49 1496.88 1071.8 907.44 718.88 2148.14 1428.84 FALSE TRUE FALSE 962.3554417 1216.014234 942.7012663 972.6025414 1386.458145 1051.357201 942.4402648 800.7143934 2059.59276 1420.341196 0.677552298 0.856142339 0.663714654 0.684766832 0.976144428 0.740214537 0.663530895 0.563747919 1.450069016 1 10.47202182 -9.38054523 0.828414497 1.021618963 0.730035977 0.46573487 0.181120829 0.554657956 0.596918837 0.109860611 0.021202652 4.16E-10 9.38054523 -0.291582986 WDGS(ph)EEDEDNSKK ddPTM_HeLa_CUDC101_4h_R1 4 WDGSEEDEDNSKK 13 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 WDGS(1)EEDEDNSKK;WDGS(1)EEDEDNSKK;WDGS(1)EEDEDNSKK;WDGS(1)EEDEDNSKK ;;; 157.5 0.00016307 1859870000 10088.95 9370.55 10332.47 9374.62 9711.07 9862.5 9220.88 9352.18 10247.09 10567.12 TRUE FALSE FALSE 8906.338575 9659.245539 10891.07458 9756.957524 8994.703713 9674.389245 9576.53243 10416.79437 9824.700613 10504.2663 0.847878216 0.919554518 1.036823922 0.928856642 0.856290526 0.92099619 0.911680279 0.991672723 0.935305745 1 13.35868778 -1.53126503 17.14900572 0.930213037 0.932990926 0 0.057294631 0 0 0.00912483 0 0.029426253 1.53126503 0.002777889 MQPQASAIPS(ph)PGK ddPTM_HeLa_CUDC101_4h_R1 1 MQPQASAIPSPGK 13 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 MQPQAS(0.003)AIPS(0.997)PGK 78.655 0.034002 7290400 3768.5 2727 2850 2884.4 3314.2 3184.1 2581.7 2113.9 3264.6 3485.3 TRUE FALSE FALSE 3326.762143 2811.015638 3004.079621 3002.038299 3069.718069 3123.368598 2681.277034 2354.537831 3130.031806 3464.569281 0.960223876 0.811360781 0.867086029 0.86649683 0.886031659 0.901517142 0.773913528 0.679604776 0.903440385 1 11.75846029 -1.528284987 0.164201527 1.033001912 1.02E-11 0.538187114 0.059281549 20.86092692 0.250637266 0.094528945 5.096023896 0.029628865 1.528284987 -1.033001912 TLTDEVNS(ph)PDSDRR ddPTM_HeLa_CUDC101_4h_R1 4 TLTDEVNSPDSDRR 14 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 TLTDEVNS(0.998)PDS(0.002)DRR;TLTDEVNS(0.932)PDS(0.068)DRR;TLTDEVNS(0.931)PDS(0.069)DRR;TLTDEVNS(0.999)PDS(0.001)DRR ;;; 156.83 3.64E-05 839110000 15791.3 14113 13150.1 13264.2 14631.1 13241.6 11913.6 9786.5 14382.4 15647.7 TRUE FALSE FALSE 13940.26775 14547.8048 13861.03418 13805.17141 13551.7929 12989.03854 12373.11154 10900.5556 13789.55138 15554.62678 0.89621358 0.935271865 0.891119689 0.887528296 0.871238705 0.835059479 0.795461808 0.700791845 0.886524092 1 13.92505616 -1.52491472 0.192138491 0.992490243 2.93E-17 0.777353781 0.036023065 10.6438997 0.143022986 0.03223732 3.034670504 0.029859689 1.52491472 -0.992490243 HMDPPPAPVQDRS(ph)PS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 HMDPPPAPVQDRSPSPR 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR;HMDPPPAPVQDRS(1)PS(1)PR ;;; 92.136 0.0037531 84203000 11628.7 9532.4 9948.4 9707.1 9444.8 9951.8 8690.5 6770.5 10470 11867.7 TRUE FALSE FALSE 10265.60141 9826.081945 10486.2406 10102.9975 8748.075921 9761.985996 9025.695496 7541.226353 10038.42217 11797.11039 0.870179313 0.832922777 0.888882129 0.856395944 0.741543957 0.827489586 0.765076802 0.639243518 0.850922119 1 13.52614591 -1.518259394 0.092987194 1.130249676 4.81E-17 0.571204162 0.059830934 35.44565541 0.264686255 0.461261229 5.130862657 0.030320797 1.518259394 -1.130249676 TRDELDQFLDKMDDPDYWR ddPTM_HeLa_CUDC101_4h_R1 2 TRDELDQFLDKMDDPDYWR 19 2 Q14137;A0A075B729;Q14137-2 Q14137 BOP1 Ribosome biogenesis protein BOP1 0 0 ; ; 83.37 0.0025303 35965000 1852.8 1902.92 1461.62 1825.26 2461.3 2355.6 2501 1990.02 2221.6 1751.57 FALSE FALSE TRUE 1635.617593 1961.54671 1540.639598 1899.701992 2279.734803 2310.670855 2597.464408 2216.555833 2130.024708 1741.151584 0.939388396 1.126580091 0.884839443 1.091060658 1.309325864 1.327093446 1.491808314 1.273040127 1.223342486 1 10.76582609 -5.80155904 2.461642382 0.978339586 1.372261412 0.639049809 0.109554409 0.072953518 0.902106918 0.010911937 0.022571501 1.58E-06 5.80155904 0.393921826 TRDELEVIHLIEEHR ddPTM_HeLa_CUDC101_4h_R1 2 TRDELEVIHLIEEHR 15 1 P10155-3;P10155-5;P10155-4;P10155 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 0 0 ; ; 160.46 2.30E-05 41711000 5620.6 5639.9 5976.6 5683.7 6715.2 5869 5056.3 5043.9 6424.5 6818.8 FALSE FALSE TRUE 4961.761788 5813.658634 6299.713074 5915.505853 6219.833075 5757.058603 5251.323185 5618.077188 6159.679391 6778.241474 0.732013135 0.857694235 0.929402279 0.872719846 0.917617512 0.849343982 0.774732385 0.82883993 0.908742985 1 12.72669532 -9.599312189 1.409313225 0.999621459 0.833234224 0.276058719 0.062818552 0.309873779 1.10837004 0.048188247 0.011255842 2.52E-10 9.599312189 -0.166387235 TREEECHFYAGGQVYPGEASR ddPTM_HeLa_CUDC101_4h_R1 2 TREEECHFYAGGQVYPGEASR 21 1 Q13162;A6NG45 Q13162 PRDX4 Peroxiredoxin-4 0 0 ; ; 133.21 2.66E-07 45371000 6837.4 6321.2 6771.8 6731.2 7852.5 6971.1 6281.2 7460.3 7210.5 2560.63 FALSE FALSE TRUE 6035.930337 6515.94868 7137.903992 7005.727431 7273.236719 6838.137882 6523.467988 8309.550396 6913.280138 2545.399259 2.371309851 2.559892581 2.804237475 2.752309841 2.857405059 2.68646966 2.56284666 3.264537132 2.715990473 1 11.31367625 -8.866490275 0.398345237 0.622256921 2.898348572 0.020080627 0.559183206 0.284817536 0.074776877 0.273956477 0.064339676 1.36E-09 8.866490275 2.276091651 VAAAAGSGPS(ph)PPGS(ph)PGHDRER ddPTM_HeLa_CUDC101_4h_R1 2 VAAAAGSGPSPPGSPGHDRER 21 1 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 2 0 VAAAAGS(0.023)GPS(0.977)PPGS(1)PGHDRER;VAAAAGS(0.165)GPS(0.835)PPGS(1)PGHDRER ; 110.57 2.75E-05 17668000 3767.6 3106.1 3261.5 3439.9 3847.1 3463.9 2907.84 2443.65 2597.81 2961.14 TRUE FALSE FALSE 3325.967639 3201.795259 3437.826555 3580.193991 3563.307098 3397.831879 3019.996363 2721.825238 2490.727172 2943.527008 1.12992598 1.087741084 1.167927641 1.216293916 1.210556957 1.15434031 1.025978819 0.924681592 0.846170993 1 11.52333015 -1.503932542 14.67589616 1.086938552 0.020568886 0 0.118547818 0 0 0.013637254 0 0.031337725 1.503932542 -1.066369666 TREEIQEVR ddPTM_HeLa_CUDC101_4h_R1 4 TREEIQEVR 9 1 P08559-3;P08559;P08559-2;P08559-4;Q5JPU3;P29803 P08559-3 PDHA1;PDHA2 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial" 0 0 ;;; ;;; 172.56 3.15E-07 30645900 11545.1 10164.7 8860.9 10648.5 10632.5 9974.1 9086.8 8827.5 9409.5 10727 FALSE FALSE TRUE 10191.80088 10477.86236 9339.947057 11082.79186 9848.161658 9783.86066 9437.28092 9832.386918 9021.636427 10663.19533 0.955792384 0.982619378 0.875905089 1.039349981 0.923565719 0.917535538 0.88503311 0.922086356 0.846053753 1 13.3803522 -1.000000034 0.102694182 1.030910027 0.647880316 0 0.06258883 95.78434 0.698207923 0.292772875 5.199104732 0.099999992 1.000000034 -0.38302971 EVAATEEDVTRLPS(ph)PTS(ph)PFSSLSQDQAATSK ddPTM_HeLa_CUDC101_4h_R1 1 EVAATEEDVTRLPSPTSPFSSLSQDQAATSK 31 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424 E9PMS6 LMO7 LIM domain only protein 7 2 0 EVAATEEDVTRLPS(0.968)PT(0.26)S(0.713)PFS(0.036)S(0.011)LS(0.011)QDQAATSK 98.114 3.33E-09 26104000 4505.2 3925 3918.9 3752 4679.4 4507.5 3993.6 4385.2 4711.3 4434.1 TRUE FALSE FALSE 3977.107285 4045.924598 4130.767588 3905.022778 4334.209985 4421.526948 4147.63449 4884.393442 4517.09822 4407.725776 0.902303702 0.917916586 0.937165286 0.885949575 0.983321151 1.003131132 0.940991954 1.108143676 1.024813804 1 12.10581875 -1.498627402 1.240144526 0.947422362 199.9576852 0.48954765 0.045491205 1133.231533 1.786043706 0.007208184 641553.7758 0.031722879 1.498627402 199.0102628 IIIEELSLVAAS(ph)PTLSPR ddPTM_HeLa_CUDC101_4h_R1 1 IIIEELSLVAASPTLSPR 18 0 Q16513-3;Q16513-2;Q16513;Q16513-4;B1AL79;H0Y5V5 Q16513-3 PKN2 Serine/threonine-protein kinase N2 1 0 IIIEELSLVAAS(0.87)PT(0.129)LS(0.002)PR 209.33 5.43E-24 202250000 1021.3 1017.9 963.23 1020.9 1004.2 867.53 773.14 685.5 1145.6 1142 TRUE FALSE FALSE 901.5847622 1049.260292 1015.305127 1062.536715 930.1221666 850.9833107 802.9602688 763.5345491 1098.377883 1135.207333 0.794202729 0.924289565 0.894378584 0.935984717 0.819341225 0.749628095 0.707324773 0.6725948 0.967557072 1 10.1487401 -1.498587431 0.158799643 0.980187564 8.93E-42 0.720565446 0.057187736 32.39684109 0.37628329 0.146764926 7.225792385 0.031725799 1.498587431 -0.980187564 ATEDGEEDEEMIES(ph)IENLEDLKGHSVR ddPTM_HeLa_CUDC101_4h_R1 3 ATEDGEEDEEMIESIENLEDLKGHSVR 27 1 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 1 0 ATEDGEEDEEMIES(1)IENLEDLKGHSVR;ATEDGEEDEEMIES(0.999)IENLEDLKGHS(0.001)VR;ATEDGEEDEEMIES(0.999)IENLEDLKGHS(0.001)VR ;; 145.72 1.62E-11 13434900 5632.18 4993.03 5069.44 5091.25 6876.75 5483.35 5788.86 9256.33 5763.3 4634.08 TRUE FALSE FALSE 4971.984398 5146.859336 5343.509261 5298.893181 6369.465853 5378.764235 6012.138269 10310.03319 5525.734335 4606.516286 1.079337202 1.117299716 1.159989226 1.150303798 1.382707768 1.167642509 1.305137743 2.238141049 1.199547335 1 12.1694604 -1.493753356 0.894233439 1.073617238 200 0.88601231 0.113224919 67.73800441 0.397050362 0.017965329 27160.07023 0.032080907 1.493753356 198.9263828 up VPKPEPIPEPKEPS(ph)PEKNSK ddPTM_HeLa_CUDC101_4h_R1 1 VPKPEPIPEPKEPSPEKNSK 20 3 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 VPKPEPIPEPKEPS(0.98)PEKNS(0.02)K 41.257 0.038983 190470000 3113.9 4786.2 4047.2 4444.2 6000.3 5292.6 5153.4 7077.8 4910.2 3430.9 TRUE FALSE FALSE 2748.893362 4933.657149 4266.003874 4625.453685 5557.669823 5191.652473 5352.168364 7883.508143 4707.799478 3410.492854 0.806010591 1.446611197 1.250846742 1.356242011 1.629579671 1.522258716 1.569324022 2.311545128 1.380386847 1 11.73576452 -1.475522344 0.254069397 0.860099349 7.609528781 0.604918729 0.240116125 12.26659724 0.190929639 0.112448829 34.30923578 0.03345628 1.475522344 6.749429432 DKPASS(ph)MSDDEMPVLEIPR ddPTM_HeLa_CUDC101_4h_R1 1 DKPASSMSDDEMPVLEIPR 19 1 Q96PN7 Q96PN7 TRERF1 Transcriptional-regulating factor 1 1 0 DKPAS(0.065)S(0.569)MS(0.365)DDEMPVLEIPR 97.152 0.0011196 10278000 1957 1476.6 1524.9 1644.9 1608.3 1428.5 1434.3 1172.6 2036 1888.7 TRUE FALSE FALSE 1727.603427 1522.092296 1607.340707 1711.986132 1489.658913 1401.253743 1489.621431 1306.084044 1952.075218 1877.465928 0.920178311 0.810716335 0.856122437 0.911860027 0.79344125 0.746353753 0.793421286 0.695663247 1.039739358 1 10.87457101 -1.474428913 0.110401377 1.10000206 1.11E-15 0.847441394 0.040842125 24.63534629 0.211817658 0.239540839 4.107691368 0.03354062 1.474428913 -1.10000206 MEEDS(ph)IRLPAHLR ddPTM_HeLa_CUDC101_4h_R1 2 MEEDSIRLPAHLR 13 1 P41212;H0YG25 P41212 ETV6 Transcription factor ETV6 1 0 MEEDS(1)IRLPAHLR;MEEDS(1)IRLPAHLR ; 119.62 0.011314 46786000 1924.35 2008.45 1616.08 1694.67 1981.32 1938.99 1715.32 2041.29 2152.13 1775.49 TRUE FALSE FALSE 1698.78061 2070.327964 1703.450173 1763.785968 1835.161971 1902.006996 1781.480467 2273.662202 2063.41829 1764.929307 0.962520484 1.173037331 0.965166235 0.99935219 1.039793472 1.077667524 1.009377804 1.28824548 1.169122346 1 10.78539468 -1.46489741 1.124741032 1.001471264 200 0.346438245 0.082889942 531.5834612 1.223410908 0.00960804 272229.132 0.034284877 1.46489741 198.9985287 APVPEPGLDLSLSPRPDS(ph)PQPR ddPTM_HeLa_CUDC101_4h_R1 2 APVPEPGLDLSLSPRPDSPQPR 22 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 0 APVPEPGLDLS(0.009)LS(0.011)PRPDS(0.98)PQPR;APVPEPGLDLSLSPRPDS(1)PQPR ; 123.64 2.81E-07 255110000 2963.3 2869.3 2830.5 2731.5 3302.7 2911.3 2728.7 2327.71 3135 3020.9 TRUE FALSE FALSE 2615.946466 2957.699732 2983.525392 2842.902377 3059.066401 2855.771803 2833.946873 2592.687097 3005.773973 3002.931552 0.8711309 0.984937445 0.993537595 0.946709016 1.018693349 0.950994637 0.943726763 0.863385346 1.000946549 1 11.55215588 -1.463076762 4.155563165 0.947264179 0.907671924 0 0.052138437 0 0 0.007801459 0 0.034428907 1.463076762 -0.039592255 IEEAMDGS(ph)ETPQLFTVLPEKR ddPTM_HeLa_CUDC101_4h_R1 1 IEEAMDGSETPQLFTVLPEKR 21 1 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 IEEAMDGS(0.823)ET(0.177)PQLFTVLPEKR 55.575 0.015494 29640000 2655.3 1915.7 2200.2 2357.4 2541.5 2706.5 2695.9 4310.1 2133.3 2019.3 TRUE FALSE FALSE 2344.049759 1974.720446 2319.149467 2453.544962 2354.018608 2654.878022 2799.881766 4800.744362 2045.364471 2007.289114 1.167768879 0.9837748 1.155363944 1.222317674 1.172735204 1.322618652 1.394857246 2.391655656 1.018968547 1 10.97103271 -1.462866968 0.861947164 1.089335453 200 0.952450795 0.085236511 42.78045975 0.263466327 0.014329169 16493.48057 0.034445543 1.462866968 198.9106645 up SCPS(ph)FSASSEGTR ddPTM_HeLa_CUDC101_4h_R1 2 SCPSFSASSEGTR 13 0 D6RCP9;D6RFG8;P27707;D6RG38 D6RCP9 DCK Deoxycytidine kinase 1 0 SCPS(0.656)FS(0.015)AS(0.312)S(0.017)EGTR;S(0.008)CPS(0.704)FS(0.073)AS(0.058)S(0.158)EGTR ; 155.39 0.00011034 14308100 2399.89 1930.59 1829.31 1971.19 2556.94 2185.9 2385.88 3444.7 2159.65 1901.51 TRUE FALSE FALSE 2118.578532 1990.06919 1928.208032 2051.583648 2368.31963 2144.207599 2477.904191 3836.830724 2070.628313 1890.199734 1.120822575 1.052835398 1.020108086 1.085379292 1.252946759 1.134381495 1.310921881 2.029854652 1.095454769 1 10.88432297 -1.459212416 0.909527355 1.062683993 200 0.950099507 0.064409525 57.64429767 0.298276999 0.011108727 23573.35637 0.034736622 1.459212416 198.937316 up NTFTAWS(ph)DEES(ph)DYEIDDRDVNK ddPTM_HeLa_CUDC101_4h_R1 1 NTFTAWSDEESDYEIDDRDVNK 22 1 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50 Q6PKG0 LARP1 La-related protein 1 2 0 NT(0.001)FT(0.028)AWS(0.735)DEES(0.746)DY(0.49)EIDDRDVNK 85.595 0.00077467 60779000 11493 10945 10294 10325 12047 11701 11321 11546 11182 10918 TRUE FALSE FALSE 10145.80796 11282.20248 10850.52478 10746.09813 11158.31681 11477.82292 11757.65476 12860.34997 10721.07323 10853.05925 0.934833924 1.039541222 0.999766474 0.990144611 1.028126407 1.057565674 1.083349357 1.184951604 0.987838819 1 13.40581415 -1.457632363 0.437121498 0.972719711 3.860199558 0.841734645 0.025764706 14.55619367 0.241854227 0.007080632 35.83962858 0.034863231 1.457632363 2.887479847 MDRT(ph)PPPPTLS(ph)PAAITVGR ddPTM_HeLa_CUDC101_4h_R1 1 MDRTPPPPTLSPAAITVGR 19 1 E7EX82;Q8NDX5-2;Q8NDX5;Q8NDX5-7;H7C4H9 E7EX82 PHC3 Polyhomeotic-like protein 3 2 0 MDRT(1)PPPPT(0.088)LS(0.9)PAAIT(0.011)VGR 102.46 0.0015346 100140000 2934.9 2575.8 2555.1 2521.6 2629.7 2768.7 2568.3 3391.6 2412 2236.7 TRUE FALSE FALSE 2590.875471 2655.157345 2693.236435 2624.441747 2435.71227 2715.89166 2667.360191 3777.686035 2312.576339 2223.396009 1.165278457 1.194190029 1.211316573 1.180375307 1.095491878 1.221506043 1.199678411 1.699061265 1.040109962 1 11.11854921 -1.446461666 0.990728609 1.106747553 199.9998056 0.838204075 0.072821766 188.9874322 0.704873821 0.013758264 84717.1578 0.035771597 1.446461666 198.8930581 IPYQS(ph)PVSSSESAPGTIMNGHGGGR ddPTM_HeLa_CUDC101_4h_R1 2 IPYQSPVSSSESAPGTIMNGHGGGR 25 0 Q5T6F2;H0YDN2 Q5T6F2 UBAP2 Ubiquitin-associated protein 2 1 0 IPYQS(0.996)PVS(0.001)S(0.001)S(0.001)ES(0.001)APGTIMNGHGGGR;IPY(0.001)QS(0.998)PVS(0.001)SSESAPGTIMNGHGGGR ; 75.942 0.0014402 19215100 1562.99 1472.15 1263.5 1386.6 1592.11 1215.37 1069.98 1052.21 1524.05 1663.88 TRUE FALSE FALSE 1379.778682 1517.505197 1331.808632 1443.151541 1474.663217 1192.188842 1111.249487 1171.989333 1461.228014 1653.983168 0.834215673 0.917485272 0.80521293 0.872530972 0.891582965 0.720798655 0.671862634 0.70858601 0.883460027 1 10.69172884 -1.44612077 0.101277235 1.090787045 4.22E-17 0.635570355 0.059552235 44.9055159 0.356081322 0.486197553 6.808484537 0.035799687 1.44612077 -1.090787045 YSS(ph)QDADEQDWEFQKR ddPTM_HeLa_CUDC101_4h_R1 2 YSSQDADEQDWEFQKR 16 1 Q9C0C2;Q9C0C2-2;A0A2R8Y5C4 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 Y(0.002)S(0.175)S(0.823)QDADEQDWEFQKR;YS(0.033)S(0.967)QDADEQDWEFQKR ; 114.53 0.00058454 28593000 2388.17 2458.52 2170.81 1954.16 2777.2 2553.97 2555.22 3633.07 2583.05 2379.96 TRUE FALSE FALSE 2108.232333 2534.264087 2288.170555 2033.859091 2572.331489 2505.257277 2653.775691 4046.644003 2476.575586 2365.803892 0.891127257 1.071206323 0.967185219 0.859690483 1.087297006 1.058945454 1.121722599 1.710473136 1.04682201 1 11.20811477 -1.43956393 0.945616006 0.957948276 200 0.890693052 0.074239841 93.22512643 0.405921074 0.011025219 39801.47782 0.03634428 1.43956393 199.0420517 DIEIS(ph)T(ph)EEEKDTGDLKDSSLLK ddPTM_HeLa_CUDC101_4h_R1 2 DIEISTEEEKDTGDLKDSSLLK 22 2 Q4G0J3;Q4G0J3-3 Q4G0J3 LARP7 La-related protein 7 2 0 DIEIS(0.989)T(0.978)EEEKDT(0.022)GDLKDS(0.005)S(0.007)LLK;DIEIS(0.994)T(0.994)EEEKDT(0.01)GDLKDS(0.001)S(0.001)LLK ; 72.644 0.0035136 80288000 7076 7220.2 6826.5 6490.3 8695.3 8578.9 7741.2 8912.6 8803.3 6518.3 TRUE FALSE FALSE 6246.562007 7442.645804 7195.561239 6755.002487 8053.865042 8415.271776 8039.780677 9927.174358 8440.424248 6479.528862 0.964045711 1.148639965 1.110506858 1.042514453 1.24297078 1.298747479 1.240797109 1.532082744 1.302629316 1 12.6616732 -1.435590106 0.284349186 0.967003804 4.218345594 0.43383124 0.122217093 9.587760145 0.153564008 0.02823485 15.06581488 0.036678359 1.435590106 3.25134179 RNS(ph)FSENEK ddPTM_HeLa_CUDC101_4h_R1 4 RNSFSENEK 9 1 Q9HCG8 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 0 RNS(0.999)FS(0.001)ENEK;RNS(1)FSENEK;RNS(0.947)FS(0.053)ENEK;RNS(0.988)FS(0.012)ENEK ;;; 179.94 5.46E-08 322872000 18909 11325.8 18757.7 20334.5 15914.7 14164.3 16454.6 9388.5 18011.1 19814.5 TRUE FALSE FALSE 16692.51568 11674.73447 19771.798 21163.8288 14740.70429 13894.13958 17089.25943 10457.24889 17268.67483 19696.64247 0.84748026 0.592727136 1.003815652 1.074489159 0.748386651 0.705406497 0.86762297 0.530915302 0.876731903 1 14.26566211 -1.433993858 0.130501069 1.027278389 7.09E-32 0.217377498 0.150769259 79.39393062 0.777266832 0.533448636 14.81874051 0.036813418 1.433993858 -1.027278389 ALDS(ph)NSLENDDLSAPGREPGHFNPESR ddPTM_HeLa_CUDC101_4h_R1 1 ALDSNSLENDDLSAPGREPGHFNPESR 27 1 Q32MZ4-3;Q32MZ4-2;Q32MZ4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 0 ALDS(0.511)NS(0.485)LENDDLS(0.005)APGREPGHFNPESR 50.099 0.013409 2992200 761.63 703.63 722.34 567.63 869.86 874.34 743.79 1104.3 871.23 759.55 TRUE FALSE FALSE 672.352886 725.3080063 761.3918854 590.7804049 805.6921608 857.6634212 772.4782295 1230.009048 835.3175306 755.0321628 0.890495689 0.960631933 1.008423115 0.78245727 1.067096477 1.135929651 1.023106389 1.629081659 1.106333706 1 9.560394291 -1.428954208 0.963419923 0.949492891 200 0.769340576 0.102453249 146.4387004 0.582480891 0.013501242 63800.25499 0.037243097 1.428954208 199.0505071 RAPS(ph)PDGFSPYSPEETNR ddPTM_HeLa_CUDC101_4h_R1 1 RAPSPDGFSPYSPEETNR 18 1 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 0 RAPS(0.888)PDGFS(0.063)PY(0.045)S(0.004)PEETNR 82.755 0.016352 82189000 1353.7 1348.9 1063.2 1144.3 1296.6 1125 1095.2 911.59 1216 1299.3 TRUE FALSE FALSE 1195.021338 1390.45801 1120.679808 1190.9695 1200.952401 1103.542499 1137.442231 1015.361721 1165.875965 1291.571706 0.925245832 1.076562768 0.867686868 0.922108695 0.929837961 0.854418299 0.880665182 0.786144289 0.902680014 1 10.33491203 -1.41736038 0.257709851 0.983455426 1.56E-11 0.455295715 0.05598621 21.63780368 0.330195696 0.026073335 9.041071826 0.03825072 1.41736038 -0.983455426 SLVGT(ph)PYWMAPELISR ddPTM_HeLa_CUDC101_4h_R1 1 SLVGTPYWMAPELISR 16 0 O96013;O96013-2;O96013-4;M0R1R1;O96013-3 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 S(0.383)LVGT(0.616)PY(0.001)WMAPELISR 141.06 0.004731 44321000 1086.9 767.77 724.36 763.74 1091.7 1010.6 889.06 1084.4 1056.2 923.22 TRUE FALSE FALSE 959.4952296 791.4240837 763.5210927 794.8886184 1011.167466 991.3244888 923.351342 1207.843713 1012.662989 917.7286464 1.04551082 0.862372649 0.831968246 0.866147768 1.101815302 1.080193468 1.006126752 1.316122927 1.103444894 1 9.841923831 -1.416447514 1.082079993 0.99083582 199.9999339 0.507034191 0.096796755 673.0200577 1.622211247 0.014896101 331360.9928 0.038331206 1.416447514 199.0090981 TSQVGAASAPAKES(ph)PRK ddPTM_HeLa_CUDC101_4h_R1 2 TSQVGAASAPAKESPRK 17 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 TSQVGAASAPAKES(1)PRK;TSQVGAASAPAKES(1)PRK ; 77.726 0.0064257 527670000 10280.9 9602.2 9924.5 9603.8 11526.5 11159.9 10188 11351.3 11319.4 11857.1 TRUE FALSE FALSE 9075.788487 9898.032401 10461.04849 9995.484475 10676.21306 10947.0435 10580.95457 12643.48611 10852.80954 11786.57344 0.77001077 0.839771834 0.887539414 0.848039893 0.905794471 0.928772349 0.897712522 1.072702442 0.920777323 1 13.52485674 -1.408028541 1.129206631 0.88339109 159.7505318 0.475001962 0.057964682 1253.890895 2.460664957 0.012797662 515121.1619 0.039081521 1.408028541 158.8671407 GSETDS(ph)AQDQPVK ddPTM_HeLa_CUDC101_4h_R1 2 GSETDSAQDQPVK 13 0 K7EN42;B7Z8J4;P30419 K7EN42 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 1 0 GSET(0.018)DS(0.982)AQDQPVK;GSET(0.003)DS(0.997)AQDQPVK ; 149.6 0.00036447 36210000 4881.6 4580.8 4211 4294.6 4933.3 4854.5 4558.8 5971.4 4633.9 4329.8 TRUE FALSE FALSE 4309.386248 4721.929018 4438.659398 4469.752351 4569.380288 4761.908501 4734.634443 6651.160039 4442.888681 4304.046157 1.001240714 1.097090702 1.031275975 1.038500097 1.061647603 1.106379515 1.100042674 1.545327303 1.032258605 1 12.07147783 -1.40682631 0.994397754 1.016157964 199.9999999 0.933346282 0.039380187 108.3420147 0.364068646 0.006267069 48822.88452 0.039189858 1.40682631 198.983842 HSAS(ph)PVVFTSAR ddPTM_HeLa_CUDC101_4h_R1 4 HSASPVVFTSAR 12 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 HSAS(1)PVVFTSAR;HS(0.002)AS(0.998)PVVFTSAR;HS(0.079)AS(0.921)PVVFTSAR;HS(0.091)AS(0.909)PVVFTSAR ;;; 155.37 0.00014275 159794800 13260.9 11531.8 10413.2 10967 13379 11498.2 10194.8 9578.4 12066.7 10480.6 TRUE FALSE FALSE 11706.4774 11887.08109 10976.16909 11414.28166 12392.05782 11278.89099 10588.01685 10668.76634 11569.30552 10418.26093 1.123649858 1.140985158 1.053550988 1.095603359 1.189455506 1.082607843 1.016294075 1.02404484 1.110483372 1 13.34682685 -1.40586814 14.37489378 1.072059682 0.005403621 0 0.058554584 0 0 0.009015827 0 0.039276417 1.40586814 -1.066656062 AS(ph)PVAVGSSGAGADPSFQPVLSAR ddPTM_HeLa_CUDC101_4h_R1 1 ASPVAVGSSGAGADPSFQPVLSAR 24 0 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 1 0 AS(0.999)PVAVGS(0.001)SGAGADPSFQPVLSAR 175.77 2.37E-11 10110000 1534.7 1321.3 1163.5 1184.6 1355.3 1355.3 1311.5 861.92 1542.3 1504.5 TRUE FALSE FALSE 1354.804792 1362.007687 1226.402329 1232.913108 1255.322219 1329.449911 1362.084994 960.0374888 1478.725741 1495.551167 0.905889964 0.910706178 0.820033681 0.824387113 0.83937096 0.888936427 0.910757869 0.641928882 0.988749682 1 10.54646155 -1.375870771 0.044064536 1.39188647 1.58E-11 0.559427305 0.064149063 288.0056927 1.037757331 8.881126572 29.62874792 0.042085184 1.375870771 -1.39188647 ALAAGADSPKTEEARPS(ph)PAPGPGT(ph)PTGTPTR ddPTM_HeLa_CUDC101_4h_R1 1 ALAAGADSPKTEEARPSPAPGPGTPTGTPTR 31 2 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 2 0 ALAAGADS(0.3)PKT(0.313)EEARPS(0.443)PAPGPGT(0.879)PT(0.04)GT(0.013)PT(0.011)R 55.686 0.0039545 40469000 1419.3 1305.9 1127.5 1391.4 1909.2 1625.4 1642.1 2010.1 1495 1595 TRUE FALSE FALSE 1252.931806 1346.133231 1188.456061 1448.147306 1768.36212 1594.398203 1705.436347 2238.921659 1433.375467 1585.512869 0.79023755 0.849020691 0.749572005 0.913362064 1.115324987 1.005604076 1.075637026 1.412111943 0.904045306 1 10.63073387 -1.375794945 0.612328755 0.888421036 22.05694378 0.757678255 0.089651888 44.51156232 0.503046626 0.019370103 1238.316467 0.042092532 1.375794945 21.16852275 EGTAPSENGETKAEEAQKTES(ph)VDNEGE ddPTM_HeLa_CUDC101_4h_R1 2 EGTAPSENGETKAEEAQKTESVDNEGE 27 2 Q15651 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 0 EGTAPSENGETKAEEAQKT(0.216)ES(0.783)VDNEGE;EGTAPSENGET(0.002)KAEEAQKT(0.495)ES(0.502)VDNEGE ; 58.5 0.0034074 53577000 2295.31 2611.63 2333.6 2371.43 3606.2 3256.52 3476.5 5945.7 2619.6 3021.86 TRUE FALSE FALSE 2026.257241 2692.091225 2459.761475 2468.147166 3340.177811 3194.407307 3610.58977 6622.534455 2511.618979 3003.885842 0.674545355 0.896202907 0.818859838 0.821651453 1.111952313 1.063425002 1.201973031 2.204655837 0.836123312 1 11.55261427 -1.375090431 0.826689223 0.850592481 200 0.929873462 0.108447844 61.7911307 0.363536839 0.02204323 22858.38888 0.04216087 1.375090431 199.1494075 up AGLES(ph)GAEPGDGDSDTTKK ddPTM_HeLa_CUDC101_4h_R1 2 AGLESGAEPGDGDSDTTKK 19 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 AGLES(1)GAEPGDGDSDTTKK;AGLES(1)GAEPGDGDSDTTKK ; 103.92 0.0004184 52206000 7100.3 6245.7 6127.4 6158.1 6166.1 5745.4 5605.8 4881.3 6125.1 7202.4 TRUE FALSE FALSE 6268.013597 6438.122614 6458.665778 6409.253936 5711.239088 5635.816067 5822.017584 5436.967461 5872.620785 7159.559804 0.875474718 0.899234421 0.902103754 0.895202235 0.797708133 0.787173544 0.813180942 0.759399685 0.820248862 1 12.80565517 -1.374962205 0.0462408 1.363297987 1.69E-11 0.242771412 0.059793153 126.0773527 0.475929601 3.688181916 13.04561131 0.04217332 1.374962205 -1.363297987 TGDLGIPPNPEDRSPSPEPIY(ph)NS(ph)EGKR ddPTM_HeLa_CUDC101_4h_R1 1 TGDLGIPPNPEDRSPSPEPIYNSEGKR 27 2 Q15637-6;Q15637-4;Q15637-3;Q15637-2;Q15637;Q15637-7;Q15637-5 Q15637-6 SF1 Splicing factor 1 2 0 T(0.004)GDLGIPPNPEDRS(0.457)PS(0.494)PEPIY(0.513)NS(0.532)EGKR 40.404 0.038945 138860000 1687.5 2058.6 2022.2 1828.7 2311.5 2008.3 2235.3 2381.5 2078.5 1741.7 TRUE FALSE FALSE 1489.693808 2122.023026 2131.526249 1903.28229 2140.98525 1969.995024 2321.51627 2652.600334 1992.82335 1731.340291 0.860428083 1.225653349 1.231142289 1.099311499 1.236605687 1.13784392 1.340878094 1.532108013 1.151029269 1 10.7576736 -1.37396872 0.250431442 0.919432136 4.053744752 0.485631138 0.124510645 17.19945212 0.25409629 0.069211179 22.14934645 0.042269906 1.37396872 3.134312616 TAPAAAVS(ph)PMQR ddPTM_HeLa_CUDC101_4h_R1 4 TAPAAAVSPMQR 12 0 Q5M775-4;Q5M775;J3KSG2 Q5M775-4 SPECC1 Cytospin-B 1 0 TAPAAAVS(1)PMQR;TAPAAAVS(1)PMQR;TAPAAAVS(1)PMQR;T(0.001)APAAAVS(0.999)PMQR ;;; 143.76 0.0011102 71220900 10212.9 8928.62 9225.2 9067.4 10033.9 8519.18 8980.35 7291.57 9330.64 9807.1 TRUE FALSE FALSE 9015.759344 9203.700199 9723.942217 9437.207765 9293.719187 8356.690835 9326.725108 8121.612855 8946.02707 9748.766933 0.924810225 0.944088649 0.997453553 0.968041172 0.953322533 0.857204905 0.956708184 0.833091294 0.917657293 1 13.25100404 -1.361865182 0.343227177 0.970662345 1.42E-29 0.396439334 0.040329752 30.47147459 0.486836832 0.012203695 18.53227692 0.043464513 1.361865182 -0.970662345 AKY(ph)EALAK ddPTM_HeLa_CUDC101_4h_R1 1 AKYEALAK 8 1 Q8WW32 Q8WW32 HMGB4 High mobility group protein B4 1 0 AKY(1)EALAK 122.19 0.013605 12898000 3480.2 2479 2716.8 2712.9 3410.6 3280.4 2921.1 3092.4 2975.3 3200.4 TRUE FALSE FALSE 3072.256232 2555.375052 2863.678426 2823.543788 3159.006833 3217.831836 3033.767806 3444.426316 2852.656875 3181.363878 0.965704128 0.80323256 0.900141743 0.887526198 0.992972497 1.011462995 0.953606039 1.082688572 0.896677332 1 11.63542968 -1.360264509 1.152739639 0.958410371 134.172301 0.251565522 0.065177237 1872.217876 2.98783845 0.010402126 659116.4776 0.043625005 1.360264509 133.2138907 VAT(ph)VFYT(ph)VVIPMLNS(ph)VIY(ph)S(ph)LRNK ddPTM_HeLa_CUDC101_4h_R1 1 VATVFYTVVIPMLNSVIYSLRNK 23 1 Q8NGL2 Q8NGL2 OR5L1 Olfactory receptor 5L1 5 0 VAT(0.948)VFY(0.514)T(0.549)VVIPMLNS(0.992)VIY(0.999)S(0.998)LRNK 45.369 0.0027925 0 380.32 347.09 299.9 408.47 533.01 682.01 885.74 1536.7 382.83 315.23 TRUE FALSE FALSE 335.7394661 357.7834315 316.1135011 425.1291722 493.6909142 669.0017956 919.9032885 1711.631716 367.0495854 313.3549979 1.071434853 1.14178307 1.008803125 1.356701425 1.575500367 2.134964497 2.935658581 5.462276739 1.171353857 1 8.291654194 -1.350595597 0.620129967 1.028978848 200 0.994467548 0.098712288 4.255770658 0.045600212 0.014882177 1132.059968 0.044607142 1.350595597 198.9710211 up TEMDKSPFNSPS(ph)PQDSPR ddPTM_HeLa_CUDC101_4h_R1 3 TEMDKSPFNSPSPQDSPR 18 1 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 0 TEMDKS(0.008)PFNS(0.411)PS(0.556)PQDS(0.024)PR;TEMDKSPFNS(0.367)PS(0.628)PQDS(0.005)PR;TEMDKSPFNS(0.154)PS(0.846)PQDSPR ;; 235.72 4.24E-43 72924000 3900.37 4313.2 3814.62 3966.7 4892.1 4302.42 4146.94 5099.5 5002 4588.34 TRUE FALSE FALSE 3443.174541 4446.08458 4020.849896 4128.479172 4531.219529 4220.358507 4306.888865 5680.006467 4795.815443 4561.04835 0.754908582 0.974794442 0.881562656 0.905160142 0.993460096 0.925304488 0.944276082 1.245329151 1.051472178 1 12.15514975 -1.349559559 1.04119781 0.89554706 199.9916057 0.503061475 0.084830222 549.3682158 1.339436492 0.014500069 260230.7913 0.044713683 1.349559559 199.0960586 S(ph)PPPMNLGMNNR ddPTM_HeLa_CUDC101_4h_R1 1 SPPPMNLGMNNR 12 0 Q06413-5;Q06413-6;A0A0D9SGI5;A0A0D9SFD0;Q06413-4;Q06413;Q06413-2;Q06413-3;A0A1B0GV32;A0A0R4J2G5;D8L7E9;A0A0D9SGF3;A0A0D9SFV9;D6RJG6;A0A0D9SG58 Q06413-5 MEF2C Myocyte-specific enhancer factor 2C 1 0 S(1)PPPMNLGMNNR 86.262 0.026378 19144000 223.32 196.79 176.23 225.4 274.32 183.04 210.97 288.96 184.66 177.25 TRUE FALSE FALSE 197.1427681 202.8528666 185.7575269 234.5927863 254.0839601 179.548817 219.1071836 321.8540384 177.0482366 176.1957091 1.118885182 1.151292887 1.054268165 1.331433027 1.442055322 1.019030587 1.243544378 1.826684884 1.004838526 1 7.461034981 -1.339113522 0.919912196 1.096873505 200 0.656418935 0.144513241 228.9356245 0.888209504 0.02374045 95091.92245 0.045802215 1.339113522 198.9031265 LPS(ph)GSGAAS(ph)PTGSAVDIR ddPTM_HeLa_CUDC101_4h_R1 2 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 LPS(0.989)GS(0.011)GAAS(0.795)PT(0.086)GS(0.119)AVDIR;LPS(0.997)GS(0.003)GAAS(0.945)PT(0.032)GS(0.023)AVDIR ; 151.03 0.00058224 80286000 2488 2383.16 2364.34 2261.09 3330.3 3511.2 4229.7 7253.5 2455.38 2455.8 TRUE FALSE FALSE 2196.360412 2456.582335 2492.163372 2353.307023 3084.630404 3444.22971 4392.840946 8079.20912 2354.168197 2441.192792 0.899707888 1.006304108 1.020879375 0.963998841 1.263575091 1.410879846 1.799464983 3.309533416 0.964351609 1 11.25337052 -1.337654553 0.722317435 0.957832113 200 0.989772219 0.070796168 11.67482324 0.09133961 0.012177029 3716.426222 0.045956341 1.337654553 199.0421679 up AGS(ph)ISSEEVDGSQGNMMR ddPTM_HeLa_CUDC101_4h_R1 1 AGSISSEEVDGSQGNMMR 18 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 AGS(0.465)IS(0.268)S(0.268)EEVDGSQGNMMR 252.25 1.49E-56 5122000 613.5 523.07 381.32 434.82 597.17 629.5 510.02 646.52 691.35 597.14 TRUE FALSE FALSE 541.58646 539.1851667 401.9353126 452.5538391 553.1179588 617.4933363 529.6916422 720.1172235 662.8522604 593.5881847 0.912394273 0.908348887 0.677128223 0.762403718 0.931821039 1.040272283 0.892355434 1.213159632 1.116687086 1 9.213318565 -1.328841698 10.8186214 0.936123345 1.160897266 0 0.149935055 0 0 0.018410133 0 0.04689843 1.328841698 0.224773921 TTNS(ph)SHANGAAQAPR ddPTM_HeLa_CUDC101_4h_R1 2 TTNSSHANGAAQAPR 15 0 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 0 T(0.024)T(0.077)NS(0.821)S(0.077)HANGAAQAPR;T(0.098)T(0.098)NS(0.783)S(0.022)HANGAAQAPR ; 98.572 0.0007412 1276700 1540.83 1156.2 1202.05 1313.43 1260.04 1145.92 1113.32 936.4 1423.49 1458.28 TRUE FALSE FALSE 1360.216243 1191.821152 1267.036459 1366.997353 1167.08936 1124.063485 1156.261125 1042.995991 1364.81314 1449.606086 0.938335081 0.822168976 0.874055698 0.943012978 0.805107933 0.775426853 0.797638156 0.719503044 0.941506215 1 10.5014452 -1.323726719 0.133568116 1.058889853 1.16E-13 0.733492922 0.044608204 21.28825323 0.206502465 0.133034287 4.223117739 0.04745405 1.323726719 -1.058889853 TFNTS(ph)TGGLLLPSDTKR ddPTM_HeLa_CUDC101_4h_R1 2 TFNTSTGGLLLPSDTKR 17 1 P12956;P12956-2;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 1 0 TFNT(0.077)S(0.847)T(0.077)GGLLLPSDTKR;T(0.096)FNT(0.071)S(0.822)T(0.012)GGLLLPSDTKR ; 115.66 6.83E-05 9926500 3374.7 3175.5 2740.13 2807.8 3264.2 2922.9 2529.22 2146.39 2872.5 3381.9 TRUE FALSE FALSE 2979.122782 3273.333391 2888.269716 2922.31422 3023.406469 2867.150552 2626.772863 2390.726362 2754.094334 3361.784308 0.886173088 0.973689294 0.859147837 0.869274752 0.899345762 0.852865707 0.7813627 0.711148052 0.819235882 1 11.71501145 -1.303121154 0.184390159 0.990533837 1.93E-22 0.443370535 0.059977056 17.82053606 0.216498326 0.050625278 4.896990424 0.049759825 1.303121154 -0.990533837 S(ph)PGYEPR ddPTM_HeLa_CUDC101_4h_R1 2 SPGYEPR 7 0 Q9H5H4;H3BS42 Q9H5H4 ZNF768 Zinc finger protein 768 1 0 S(1)PGYEPR;S(0.999)PGY(0.001)EPR ; 101.46 0.020216 91431000 4598 3285.2 4166.1 4069.2 4010.1 3922 2942.9 3150 3920 4423.4 TRUE FALSE FALSE 4059.02941 3386.413118 4391.331968 4235.159565 3714.282912 3847.194384 3056.408639 3508.583267 3758.415941 4397.08942 0.923117322 0.770148795 0.998690622 0.963173399 0.844713982 0.87494113 0.695098131 0.797933117 0.854750855 1 12.10233316 -1.302911178 0.180147199 1.004249349 4.77E-13 0.24132366 0.083347119 30.88824532 0.369645616 0.094263442 8.35515341 0.049783889 1.302911178 -1.004249349 SVS(ph)GSPEPAAK ddPTM_HeLa_CUDC101_4h_R1 3 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 S(0.222)VS(0.389)GS(0.389)PEPAAK;S(0.004)VS(0.498)GS(0.498)PEPAAK;S(0.072)VS(0.464)GS(0.464)PEPAAK ;; 179.6 1.01E-07 320224000 19240.3 17860.9 18534.6 18827.8 18278.9 15995.4 14666.4 12322 21121.5 21473.5 TRUE FALSE FALSE 16984.9812 18411.17316 19536.63654 19595.67906 16930.50196 15690.3144 15232.08796 13724.68667 20250.86283 21345.77467 0.795706947 0.86252073 0.915246078 0.918012083 0.793154722 0.735054812 0.713587968 0.642969716 0.948705922 1 14.3816629 -1.302862614 0.102838611 1.066805936 6.81E-26 0.730389984 0.056661341 57.92366738 0.451132776 0.56271018 8.732823155 0.049789457 1.302862614 -1.066805936 LQQQHSEQPPLQPS(ph)PVMTR ddPTM_HeLa_CUDC101_4h_R1 3 LQQQHSEQPPLQPSPVMTR 19 0 A0A0A0MSK5;J3KN66;Q5JTV8;Q5JTV8-3;H0YDU3;Q5JTV8-2 A0A0A0MSK5 TOR1AIP1 Torsin-1A-interacting protein 1 1 0 LQQQHSEQPPLQPS(1)PVMTR;LQQQHS(0.087)EQPPLQPS(0.893)PVMT(0.02)R;LQQQHSEQPPLQPS(0.997)PVMT(0.003)R ;; 265.42 4.40E-106 8310900 3390.34 2927.24 2163.05 2851.36 2964.01 2702.73 2462.26 2104.64 2556.56 3016.36 TRUE FALSE FALSE 2992.929485 3017.424795 2279.991026 2967.650785 2745.360887 2651.179928 2557.230193 2344.22371 2451.177515 2998.418557 0.998169344 1.006338754 0.760397851 0.989738667 0.915602954 0.884192743 0.852859647 0.781820038 0.81749011 1 11.54998607 -1.302857725 0.208470516 1.020489008 3.02E-17 0.045009011 0.088477675 25.85742787 0.338163081 0.054673993 8.574637758 0.049790017 1.302857725 -1.020489008 TSASK(ac)LGALSLGSFNKPSSK ddPTM_HeLa_CUDC101_4h_R1 1 TSASKLGALSLGSFNKPSSK 20 2 Q10571 Q10571 MN1 Probable tumor suppressor protein MN1 0 1 TSASK(1)LGALSLGSFNKPSSK 287.75 4.69E-99 1218700 382.8 475.19 360.72 452.26 484.72 496.89 481.3 585.84 196.99 413.03 FALSE TRUE FALSE 337.9287643 489.8300407 380.2216143 470.7051176 448.9631713 487.4126511 499.8639022 652.5296576 188.8699888 410.5732792 0.823065653 1.193039259 0.926074914 1.146458237 1.093503143 1.187151419 1.217477921 1.589313505 0.460015297 1 8.681495927 -1 0.383797269 0.927370056 10.08157116 0.589916651 0.179415634 21.49543648 0.259708307 0.028355764 148.5652028 0.1 1 9.154201103 GPGSWWTS(ph)TESLCSNASGDSR ddPTM_HeLa_CUDC101_4h_R1 2 GPGSWWTSTESLCSNASGDSR 21 0 Q63ZY3-3;Q63ZY3;Q63ZY3-2;K7ES05 Q63ZY3-3 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 0 GPGSWWT(0.008)S(0.987)T(0.004)ES(0.001)LCSNASGDSR;GPGSWWT(0.035)S(0.479)T(0.479)ES(0.006)LCSNASGDSR ; 192.22 4.07E-14 33052000 2751.2 2589.4 2852.4 2984.5 3314.1 3523.5 3848.6 4221.9 2546.6 1124.49 TRUE FALSE FALSE 2428.708507 2669.176345 3006.609372 3106.22081 3069.625446 3456.295108 3997.041791 4702.50403 2441.62807 1117.801483 2.172754771 2.387880482 2.689752533 2.778866244 2.746127547 3.092047344 3.575806483 4.206922338 2.184312784 1 10.12644828 -1.301489462 0.103793883 3.91E-16 11.36085344 0.793366231 0.372874917 13.98273777 0.109733446 1.425616757 22.66183427 0.04994713 1.301489462 11.36085344 up VDHGAEIITQS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 4 VDHGAEIITQSPGR 14 0 A0A669KB77;P11137-3;P11137;P11137-2;P11137-4 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 VDHGAEIIT(0.002)QS(0.998)PGR;VDHGAEIIT(0.005)QS(0.995)PGR;VDHGAEIITQS(1)PGR;VDHGAEIITQS(1)PGR ;;; 199.61 1.32E-16 765347000 12287.5 12574 11017.6 11634.8 10904.5 9325.1 9799.2 8191.94 13058 13368.3 TRUE FALSE FALSE 10847.17788 12961.39004 11613.24478 12109.31743 10100.09676 9147.239254 10177.15843 9124.477337 12519.74371 13288.78476 0.816265601 0.97536308 0.873913228 0.911243402 0.760046682 0.688342796 0.765845682 0.686629929 0.942128565 1 13.69792156 -1.286764743 0.113297308 1.052720572 1.64E-12 0.685322371 0.061326448 48.41164478 0.407624419 0.39533229 7.967101496 0.051669619 1.286764743 -1.052720572 S(ph)PLPAGPSSCTSPR ddPTM_HeLa_CUDC101_4h_R1 2 SPLPAGPSSCTSPR 14 0 Q8N3V7-2 Q8N3V7-2 SYNPO Synaptopodin 1 0 S(0.992)PLPAGPS(0.002)SCT(0.004)S(0.001)PR;S(1)PLPAGPSSCTSPR ; 143.46 0.0004201 50852000 1407.9 1441.63 1332.34 1266.53 1292.22 1348.03 1372.74 1821.54 1346.63 1100.52 TRUE FALSE FALSE 1242.868096 1486.044912 1404.370331 1318.184568 1196.895505 1322.318574 1425.687042 2028.896751 1291.121341 1093.974058 1.136103811 1.358391363 1.283732754 1.204950481 1.094080336 1.20872937 1.303218327 1.854611392 1.180212028 1 10.09536281 -1.284802377 0.894100788 1.112512237 199.9999988 0.75765495 0.108762993 180.4054061 0.692447134 0.020345632 72784.52582 0.051903617 1.284802377 198.8874866 GQESSS(ph)DQEQVDVESIDFSK ddPTM_HeLa_CUDC101_4h_R1 1 GQESSSDQEQVDVESIDFSK 20 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 GQES(0.061)S(0.21)S(0.729)DQEQVDVESIDFSK 134.63 1.25E-05 2729200 2264.3 1837.4 1728.4 1836.4 2410 1887.5 1403.9 1479.3 2251 2236.6 TRUE FALSE FALSE 1998.882186 1894.008116 1821.842532 1911.29633 2232.219101 1851.499082 1458.048893 1647.697532 2158.212827 2223.296604 0.899062313 0.851891787 0.819432967 0.859667723 1.004013184 0.832771965 0.655804939 0.741105586 0.970726454 1 11.11848471 -1.284742176 0.148383962 1.022233423 4.08E-13 0.547484357 0.071283717 37.07556433 0.385637439 0.177224374 8.046495361 0.051910812 1.284742176 -1.022233423 SRS(ph)GEGEVSGLMR ddPTM_HeLa_CUDC101_4h_R1 1 SRSGEGEVSGLMR 13 1 Q13263-2;Q13263;M0R0K9 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 1 0 SRS(1)GEGEVSGLMR 138.31 0.0040661 134630000 2241.1 2004.7 1988.6 1906.2 2435.3 2347.2 2394.5 3739.6 2051.3 1817.8 TRUE FALSE FALSE 1978.401655 2066.462431 2096.109731 1983.943075 2255.652771 2302.431071 2486.856667 4165.300948 1966.744546 1806.987645 1.09486175 1.143595219 1.160002249 1.097928412 1.248294518 1.274181967 1.376244422 2.305107597 1.088410622 1 10.81937093 -1.282588249 0.814538177 1.06942986 199.9999997 0.959307306 0.07207723 43.73447289 0.226580238 0.012717631 15954.86033 0.052168909 1.282588249 198.9305698 up EALGLGPPAAQLT(ph)PPPAPVGLR ddPTM_HeLa_CUDC101_4h_R1 3 EALGLGPPAAQLTPPPAPVGLR 22 0 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR ;; 167.89 1.10E-08 112455000 5707.2 5061.2 4309.53 4269.36 4600.08 4711.3 4581.5 3087.52 4743.4 5550 TRUE FALSE FALSE 5038.210668 5217.129573 4542.516227 4443.482955 4260.741263 4621.439802 4758.20999 3438.990797 4547.875044 5516.988353 0.913217565 0.945648103 0.823368827 0.805418223 0.772294772 0.837674381 0.862465114 0.623345669 0.824340157 1 12.42966522 -1.276897495 0.115547656 1.081873006 1.73E-13 0.351683377 0.078836731 35.78682899 0.30555978 0.289244692 6.182978516 0.052856999 1.276897495 -1.081873006 LSS(ph)SSATLLNSPDR ddPTM_HeLa_CUDC101_4h_R1 2 LSSSSATLLNSPDR 14 0 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40 Q14244-5 MAP7 Ensconsin 1 0 LSS(0.678)S(0.322)SATLLNSPDR;LSS(0.5)S(0.5)S(0.001)ATLLNSPDR ; 281.6 2.68E-103 113791000 2440.5 1943.42 1996.64 1734.15 2774.1 2969.3 3514 5753.7 1745.33 1802.25 TRUE FALSE FALSE 2154.42829 2003.294467 2104.584398 1804.876133 2569.46017 2912.66555 3649.536157 6408.677951 1673.386759 1791.530137 1.202563242 1.118203052 1.174741275 1.007449496 1.434226596 1.625797685 2.037105646 3.577209124 0.934054485 1 10.8069766 -1.258307583 0.692247039 1.093259548 200 0.97979331 0.108025974 15.41403261 0.117219652 0.017752792 4690.372298 0.055168658 1.258307583 198.9067405 up TSDPLASK(ac)TTTTK ddPTM_HeLa_CUDC101_4h_R1 2 TSDPLASKTTTTK 13 1 A0A3B3IRW6;Q2KHR3;Q2KHR3-2;H0YCQ7 A0A3B3IRW6 QSER1 Glutamine and serine-rich protein 1 0 1 ; TSDPLASK(1)TTTTK;TSDPLASK(1)TTTTK 192.15 5.83E-09 2247200 1792.87 1740.15 1751.91 1566.41 1718.3 1954.4 2326.77 2163.62 1721.03 1829.55 FALSE TRUE FALSE 1582.712496 1793.761959 1846.623554 1630.29497 1591.544432 1917.123076 2416.514298 2409.917755 1650.088415 1818.667755 0.870259283 0.986305472 1.015371581 0.896422651 0.87511555 1.054135958 1.328727741 1.325100612 0.907306137 1 10.82866629 -4.859997595 3.305838768 0.940405898 1.334567288 0.90627585 0.049568974 0.057651309 1.224671272 0.008528127 0.031016451 1.38E-05 4.859997595 0.39416139 LKS(ph)VEDEMDSPGEEPFYTGQGR ddPTM_HeLa_CUDC101_4h_R1 3 LKSVEDEMDSPGEEPFYTGQGR 22 1 A0A590UJA3;S4R3W2;A0A590UJU2;A0A590UK38;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4;A0A590UK73;B1AKN7 A0A590UJA3 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 0 LKS(0.998)VEDEMDS(0.002)PGEEPFYTGQGR;LKS(0.999)VEDEMDS(0.001)PGEEPFYTGQGR;LKS(1)VEDEMDSPGEEPFYTGQGR ;; 108.19 1.19E-05 29214400 3847.04 3196.44 3622.69 4413.7 5642.4 5571 7452.2 12623.6 3807.93 3922.1 TRUE FALSE FALSE 3396.095803 3294.918528 3818.543579 4593.709764 5226.171393 5464.742457 7739.63385 14060.6196 3650.965514 3898.771175 0.871068255 0.845117187 0.979422338 1.178245544 1.340466306 1.401657654 1.985146987 3.6064234 0.93644006 1 11.92880377 -1.248977674 0.67926398 0.93930049 200 0.98582879 0.095240171 13.74734554 0.107491361 0.017992815 4098.377273 0.056366663 1.248977674 199.0606995 up TITVPVSGS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 TITVPVSGSPK 11 0 E9PMC9;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7;Q7Z589-2 E9PMC9 C11orf30;EMSY Protein EMSY 1 0 TITVPVS(0.026)GS(0.973)PK 143.31 0.0012355 28401000 5125.5 4406.3 4209 4378.9 4353.3 4155.8 4223.3 2788.1 4689.5 5225.3 TRUE FALSE FALSE 4524.69666 4542.05288 4436.551272 4557.490469 4032.165732 4076.535039 4386.194096 3105.486034 4496.196825 5194.219683 0.87110229 0.874443739 0.85413239 0.87741581 0.776279399 0.784821453 0.844437541 0.597873448 0.865615453 1 12.34269132 -1.245524847 0.106262016 1.084412786 5.26E-16 0.564290846 0.064495584 37.58477455 0.297221067 0.343908576 5.961010217 0.056816589 1.245524847 -1.084412786 GSSPT(ph)PPCS(ph)PVQPSK ddPTM_HeLa_CUDC101_4h_R1 2 GSSPTPPCSPVQPSK 15 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 2 0 GSS(0.021)PT(0.978)PPCS(1)PVQPSK;GS(0.023)S(0.158)PT(0.869)PPCS(0.949)PVQPSK ; 139.34 0.0016951 14231300 3996.3 3896.9 3821 3788.9 4448.1 4191.3 3845.2 4313.8 4475.6 4285.8 TRUE FALSE FALSE 3527.859772 4016.95887 4027.574818 3943.427719 4119.972525 4111.357936 3993.510652 4804.865555 4291.113874 4260.307871 0.828076251 0.942879949 0.945371776 0.925620363 0.967059811 0.965037753 0.937376071 1.127821205 1.007230933 1 12.05674198 -1.237990486 1.086525599 0.924745511 200 0.489406533 0.05125864 1174.433308 1.772396665 0.009647095 582205.6054 0.057810871 1.237990486 199.0752545 TSEEDTPK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TSEEDTPKK 9 1 A0A1B0GW41;Q8WYH8-2;Q8WYH8 A0A1B0GW41 ING5 Inhibitor of growth protein 5 0 1 ; TSEEDTPK(1)K;TSEEDTPK(1)K 169.09 0.0024417 1541510 1556.44 1156.97 1643.79 1493.95 1396.4 1557.31 1397.61 1191.02 922.91 1377.12 FALSE TRUE FALSE 1373.996463 1192.614874 1732.65826 1554.879738 1293.390354 1527.606906 1451.516286 1326.600903 884.8672592 1368.928829 1.003701897 0.871202979 1.265703682 1.135836798 0.944819283 1.115914045 1.060329986 0.969079527 0.646393911 1 10.41883173 -6.796289759 24.99987772 0.992006147 1.078725644 0.18911849 0.142877263 235.2348843 168744.5682 0.014515546 0.019077666 1.60E-07 6.796289759 0.086719498 ELPPAAAIGATSLVAAPHS(ph)SSSSPSKDSSR ddPTM_HeLa_CUDC101_4h_R1 1 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 ELPPAAAIGATSLVAAPHS(0.186)S(0.186)S(0.186)S(0.186)S(0.186)PS(0.025)KDS(0.023)S(0.019)R 51.052 0.0086169 15192000 1154.8 729.76 664.63 692.56 1535.1 1140.4 1199.6 1223.5 1103.4 1289.8 TRUE FALSE FALSE 1019.436095 752.2430406 700.5619082 720.8055903 1421.858731 1118.64877 1245.868974 1362.778294 1057.917385 1282.128212 0.795112443 0.586714366 0.546405501 0.562194626 1.108983265 0.872493686 0.971719491 1.06290329 0.825126048 1 10.32432482 -1.232610141 11.92397925 0.8608559 1.12566112 0 0.200750494 0 0 0.02878521 0 0.058531528 1.232610141 0.26480522 DSY(ph)VGDEAQSK ddPTM_HeLa_CUDC101_4h_R1 1 DSYVGDEAQSK 11 0 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;C9JUM1;C9JZR7;C9JTX5;P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;P63261;I3L3I0;I3L1U9;K7EM38;I3L3R2;J3KT65 P60709;P63267;P63261 ACTB;ACTG2;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 DS(0.271)Y(0.729)VGDEAQSK 117.14 0.02896 3851600 1602.6 1119.1 1261.8 1398.4 1356.9 1501.7 1113.1 944.52 1533.1 1576.3 TRUE FALSE FALSE 1414.745657 1153.578145 1330.016725 1455.432796 1256.80419 1473.057575 1156.03264 1052.040339 1469.904969 1566.924097 0.902880784 0.736205504 0.848807372 0.928847031 0.802083644 0.940095042 0.737771946 0.671404786 0.938083071 1 10.61371958 -1.231831368 0.060259116 1.270340959 2.43E-12 0.432617326 0.077961406 175.7565067 0.832904702 3.72955569 19.88860622 0.05863658 1.231831368 -1.270340959 TSESPSKPGEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 TSESPSKPGEKK 12 2 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;F8W7E0;H0YA91;E9PSG1;H0Y944;D6RBR1;D6RGF7;E7EN75 P20810-6 CAST Calpastatin 0 1 TSESPSKPGEK(1)K 101.72 0.010101 0 3505.8 3897.6 4456.1 4129.8 4062.6 3542 4388.4 3580 3498.3 4195.1 FALSE TRUE FALSE 3094.855438 4017.680436 4697.010245 4298.231095 3762.910092 3474.442251 4557.662058 3987.532729 3354.098593 4170.147359 0.742145342 0.963438481 1.126341551 1.030714439 0.902344634 0.833170138 1.092925901 0.95620907 0.804311768 1 12.02588265 -7.020432926 24.64152544 0.876896171 0.990585516 0.269963741 0.101411151 900.7832159 1086317.679 0.020591807 0.025395222 9.54E-08 7.020432926 0.113689345 NSSS(ph)PVSLDAALPESSNVYR ddPTM_HeLa_CUDC101_4h_R1 1 NSSSPVSLDAALPESSNVYR 20 0 H7C296;R4GN32;H7C1E9;Q70EL1-6;Q70EL1-7;Q70EL1 H7C296 USP54 Inactive ubiquitin carboxyl-terminal hydrolase 54 1 0 NSS(0.003)S(0.992)PVS(0.005)LDAALPESSNVYR 130.95 1.71E-05 6137900 1011.6 831.63 1004.5 702.54 968.02 807.76 831.88 607.85 934.06 986.26 TRUE FALSE FALSE 893.0217815 857.2515346 1058.806308 731.1926178 896.6110932 792.3533238 863.9658903 677.045187 895.5576514 980.3936817 0.9108808 0.874395205 1.079980755 0.74581531 0.914541893 0.808199133 0.881243837 0.690585017 0.913467384 1 9.937217376 -1.227333431 0.185993216 0.997757153 1.19E-12 0.379205279 0.085113651 33.89753696 0.403891655 0.089770426 9.542362625 0.059247028 1.227333431 -0.997757153 KLS(ph)SS(ph)SEPYEEDEFNDDQSIKK ddPTM_HeLa_CUDC101_4h_R1 1 KLSSSSEPYEEDEFNDDQSIKK 22 2 D6RAY8;Q9H4L7;Q9H4L7-2 D6RAY8 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 0 KLS(0.478)S(0.478)S(0.469)S(0.469)EPY(0.107)EEDEFNDDQSIKK 51.166 0.021461 33013000 3271.8 2410.7 2814.2 2531.7 3205.4 2527.3 2490.7 1903 2829.3 3275.4 TRUE FALSE FALSE 2888.284564 2484.97081 2966.344164 2634.953669 2968.944028 2479.095963 2586.767133 2119.629828 2712.675056 3255.917775 0.887087686 0.763216697 0.91106237 0.809281392 0.911860874 0.761412337 0.794481714 0.651008402 0.8331522 1 11.66884855 -1.218989004 0.077727667 1.178858741 9.22E-13 0.318132726 0.077587095 75.11685837 0.449331155 1.132121068 9.627996456 0.060396392 1.218989004 -1.178858741 YREPPPT(ph)PPGYLGISLADLK ddPTM_HeLa_CUDC101_4h_R1 2 YREPPPTPPGYLGISLADLK 20 1 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 Y(0.012)REPPPT(0.988)PPGYLGISLADLK;Y(0.043)REPPPT(0.957)PPGY(0.001)LGISLADLK ; 84.436 0.0033171 32402000 2472.8 1811.31 1753.73 2179.5 2394.7 1945.71 1864.45 1674.52 2003.38 2141.43 TRUE FALSE FALSE 2182.942133 1867.114314 1848.541949 2268.389431 2218.047752 1908.598824 1936.362461 1865.140588 1920.799828 2128.692679 1.025484869 0.877117835 0.86839306 1.065625608 1.041976502 0.896606092 0.909648668 0.876190634 0.902337781 1 11.05575197 -1.214239166 0.298532868 1.007598533 6.21E-14 0 0.074050219 45.8604603 0.661115286 0.027129067 24.42274334 0.061060567 1.214239166 -1.007598533 ADKDYHFKVDNDENEHQLSLR ddPTM_HeLa_CUDC101_4h_R1 1 ADKDYHFKVDNDENEHQLSLR 21 2 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 0 0 46.368 0.022357 82159000 3157.5 4342.7 3435.8 3568.5 6991.8 5184.9 5192.8 8307.1 4009.1 3580.5 FALSE FALSE TRUE 2787.382636 4476.49344 3621.549741 3714.038854 6476.028844 5086.006671 5393.088035 9252.746686 3843.843201 3559.203027 0.783147973 1.257723543 1.017517043 1.043502949 1.819516559 1.428973462 1.515251587 2.599668132 1.079973009 1 11.79733852 -1 0.37923986 0.899157391 22.80525965 0.767017531 0.24351287 18.64901734 0.22662434 0.062517484 303.6549055 0.1 1 21.90610226 up TSFFQALGITTK ddPTM_HeLa_CUDC101_4h_R1 1 TSFFQALGITTK 12 0 F8VWS0;P05388-2;Q8NHW5;P05388;F8VPE8;G3V210;F8VW21;F8VU65 F8VWS0 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 0 0 138.75 7.61E-07 0 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 ATGEPGTFVCTS(ph)HLPAAASASPK ddPTM_HeLa_CUDC101_4h_R1 1 ATGEPGTFVCTSHLPAAASASPK 23 0 Q8IY33-4;Q8IY33-2;Q8IY33 Q8IY33-4 MICALL2 MICAL-like protein 2 1 0 ATGEPGTFVCT(0.171)S(0.644)HLPAAAS(0.148)AS(0.036)PK 58.479 0.0077478 41574000 2287.6 1993 1892.9 2088.6 2315 1956.5 1718.4 1971.1 1872.7 1974.5 TRUE FALSE FALSE 2019.450996 2054.401968 1995.2359 2173.782136 2144.227062 1919.183022 1784.679264 2195.482057 1795.506513 1962.755586 1.028885619 1.046692712 1.016548323 1.10751545 1.092457501 0.977800311 0.909272289 1.118571294 0.91478864 1 10.93866482 -1.214163961 14.82497855 1.023074989 1.178769214 0 0.069969326 0 0 0.007768407 0 0.061071142 1.214163961 0.155694225 SRS(ph)FDYNYR ddPTM_HeLa_CUDC101_4h_R1 2 SRSFDYNYR 9 1 O75494-6;O75494-3;Q5JRI1;O75494-5;O75494-4;O75494-2;O75494 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 0 SRS(1)FDYNYR;S(0.14)RS(0.86)FDYNYR ; 136.81 0.011456 159745000 5850.8 5593.7 4681.5 4711.5 5043.8 6626 5657.4 8085.5 5572.1 5006.2 TRUE FALSE FALSE 5164.978093 5766.035267 4934.596051 4903.655335 4671.728923 6499.62009 5875.607813 9005.920637 5342.41568 4976.4229 1.037889705 1.158670672 0.991594997 0.985377536 0.938772491 1.306082747 1.180689007 1.809717707 1.073545353 1 12.28089338 -1.196895603 0.858326527 1.022193751 199.9970097 0.857269662 0.092409632 107.6970245 0.400501829 0.013238384 41703.28611 0.063548367 1.196895603 198.974816 WEADTLDKEGLSES(ph)VR ddPTM_HeLa_CUDC101_4h_R1 2 WEADTLDKEGLSESVR 16 1 Q6PHR2-3;Q6PHR2;Q6PHR2-4 Q6PHR2-3 ULK3 Serine/threonine-protein kinase ULK3 1 0 WEADTLDKEGLS(0.008)ES(0.992)VR;WEADTLDKEGLS(0.191)ES(0.809)VR ; 77.357 0.011458 31833000 5478.8 4373.5 4543.5 4625.6 6125.8 5206.5 5591.3 6277.9 4556.1 5039.7 TRUE FALSE FALSE 4836.583369 4508.242351 4789.135353 4814.251962 5673.911938 5107.194687 5806.958314 6992.55076 4368.29563 5009.72364 0.965439157 0.899898413 0.955967973 0.960981545 1.132579828 1.019456372 1.159137456 1.395795709 0.871963394 1 12.2905153 -1.196742929 0.653476693 0.974903382 30.13740994 0.837161198 0.059574956 38.53490101 0.30274941 0.008611851 1614.122723 0.063570711 1.196742929 29.16250656 T(ph)PEASPEPK ddPTM_HeLa_CUDC101_4h_R1 1 TPEASPEPK 9 0 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 1 0 T(0.999)PEAS(0.001)PEPK 114.86 0.037712 9155900 5528.1 4814.7 4803.9 5175.2 5191 4541.9 4536.7 3830.2 5044.3 5377.7 TRUE FALSE FALSE 4880.104498 4963.0352 5063.613365 5386.267025 4808.070272 4455.270825 4711.682039 4266.214486 4836.371819 5345.713201 0.912900546 0.928414042 0.947228775 1.007586233 0.899425407 0.833428704 0.881394467 0.798062733 0.904719658 1 12.38416672 -1.192721232 0.253300251 0.974738602 1.09E-16 0.530379007 0.042626033 23.24849975 0.317960914 0.023390766 9.629197704 0.064162129 1.192721232 -0.974738602 EIESEIDS(ph)EEELINKK ddPTM_HeLa_CUDC101_4h_R1 3 EIESEIDSEEELINKK 16 1 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 0 EIES(0.004)EIDS(0.996)EEELINKK;EIESEIDS(1)EEELINKK;EIESEIDS(1)EEELINKK ;; 100.45 0.0022504 20243100 5219 4451.1 4457.2 4442.57 4925.1 5053.9 4979.5 6103.1 5227.4 6175.4 TRUE FALSE FALSE 4607.236731 4588.233115 4698.169714 4623.757207 4561.785185 4957.505278 5171.560983 6797.852234 5011.924359 6138.668446 0.750527052 0.747431329 0.765340196 0.753218267 0.743122914 0.807586421 0.842456475 1.107382211 0.816451386 1 12.58371004 -1.184544071 11.96157206 0.8510665 0.82480232 0 0.118518062 0 0 0.018250828 0 0.065381658 1.184544071 -0.02626418 FSGFSAKPNNSGEAPS(ph)SPTPK ddPTM_HeLa_CUDC101_4h_R1 2 FSGFSAKPNNSGEAPSSPTPK 21 1 P49916-4;P49916-2;P49916-3;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 FSGFSAKPNNSGEAPS(0.494)S(0.494)PT(0.013)PK;FSGFSAKPNNSGEAPS(0.477)S(0.477)PT(0.046)PK ; 112.44 1.06E-05 133768000 6587.8 5386.6 5128.3 5249.7 5611 5548.2 5013.2 4168.3 5645.7 5849.2 TRUE FALSE FALSE 5815.58807 5552.554761 5405.55141 5463.805457 5197.087709 5442.377329 5206.560803 4642.802423 5412.981856 5814.408698 1.000202836 0.954964649 0.929682052 0.939700964 0.893829103 0.936015614 0.895458347 0.798499497 0.930959989 1 12.50541677 -1.170626778 0.233621716 1.012283633 8.87E-19 0.63189745 0.03341562 12.07319461 0.158576505 0.016083957 4.671487533 0.067510795 1.170626778 -1.012283633 HGGS(ph)PQPLATTPLSQEPVNPPSEAS(ph)PTRDR ddPTM_HeLa_CUDC101_4h_R1 2 HGGSPQPLATTPLSQEPVNPPSEASPTRDR 30 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 HGGS(0.981)PQPLAT(0.007)T(0.008)PLS(0.004)QEPVNPPS(0.175)EAS(0.664)PT(0.161)RDR;HGGS(0.626)PQPLAT(0.079)T(0.227)PLS(0.069)QEPVNPPS(0.189)EAS(0.581)PT(0.23)RDR ; 78.044 1.60E-05 18154700 1345.57 952.31 923.08 1165.04 1075.68 930.91 1112.19 696.48 1351.48 1223.62 TRUE FALSE FALSE 1187.844324 981.6495423 972.984497 1212.555367 996.3292295 913.1544428 1155.087541 775.7644679 1295.771422 1216.341854 0.976571118 0.807050698 0.799926841 0.996886988 0.819119416 0.750738322 0.949640545 0.6377849 1.065302011 1 10.24833304 -1.135794643 0.132960825 1.067549071 1.63E-17 0.484579796 0.09288519 49.91832178 0.460289923 0.286465784 10.01006902 0.073148489 1.135794643 -1.067549071 TSGSEMANK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 TSGSEMANKR 10 1 Q86T24 Q86T24 ZBTB33 Transcriptional regulator Kaiso 0 1 TSGSEMANK(1)R 179.81 0.00019489 3024100 526.84 509.73 532.96 559.98 541.7 341.52 457.45 717.04 264.42 366.15 FALSE TRUE FALSE 465.0846138 525.4341771 561.7734297 582.8184048 501.7398702 335.006075 475.0939997 798.6649352 253.5204957 363.9721235 1.277802842 1.443611044 1.543451801 1.601272095 1.378511808 0.920416849 1.305303261 2.194302485 0.696538222 1 8.507684149 -10.56590542 0.083104032 3.00E-16 2.00459848 0.38952005 0.308831049 79.35536724 1.041142791 21.86374352 6.710084066 2.72E-11 10.56590542 2.00459848 GLAEVQQDGEAEEGATS(ph)DGEKKR ddPTM_HeLa_CUDC101_4h_R1 1 GLAEVQQDGEAEEGATSDGEKKR 23 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 GLAEVQQDGEAEEGAT(0.28)S(0.72)DGEKKR 67.138 0.002895 42275000 2581.4 2948.1 2789.5 2652.1 3407.2 2856.5 3173.7 4485.3 2719.2 2825.1 TRUE FALSE FALSE 2278.812205 3038.927467 2940.308808 2760.264101 3155.857644 2802.017022 3296.110672 4995.888422 2607.113425 2808.29618 0.811457218 1.082124987 1.047008086 0.982896363 1.123762396 0.997764069 1.173704788 1.778974902 0.928361276 1 11.45547938 -1.124561702 0.827938177 0.941862681 200 0.872467655 0.088667632 124.1114375 0.454884591 0.017005082 46341.63255 0.07506514 1.124561702 199.0581373 TGSES(ph)SQTGTSTTSSR ddPTM_HeLa_CUDC101_4h_R1 2 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 T(0.023)GS(0.092)ES(0.868)S(0.016)QTGTSTTSSR;T(0.002)GS(0.008)ES(0.99)SQTGTSTTSSR ; 264 3.66E-70 72979100 572.74 642.8 612.6 627.22 605.4 752.19 602.12 744.78 814.18 729.36 TRUE FALSE FALSE 505.6042854 662.6039061 645.719009 652.8007427 560.7408481 737.843229 625.3439701 829.5627447 780.6191558 725.0217343 0.697364315 0.913909025 0.89062021 0.900387825 0.773412467 1.01768429 0.86251755 1.144190175 1.0766838 1 9.501880434 -1.116213293 0.994528811 0.862562747 199.8802871 0.220530034 0.113684673 1138.135156 1.99500043 0.018062057 515508.6333 0.07652207 1.116213293 199.0177243 SLENETLNKEEDCHS(ph)PTSKPPKPDQPLK ddPTM_HeLa_CUDC101_4h_R1 1 SLENETLNKEEDCHSPTSKPPKPDQPLK 28 3 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SLENET(0.003)LNKEEDCHS(0.332)PT(0.332)S(0.332)KPPKPDQPLK 62.605 0.00068983 799830000 3283 2379 3049.1 2815 3078.6 3026.4 3086.4 3964 2944.9 2605.3 TRUE FALSE FALSE 2898.171717 2452.29417 3213.943569 2929.807867 2851.497811 2968.676462 3205.443482 4415.245737 2823.509976 2589.80356 1.119070095 0.946903544 1.240998977 1.131285752 1.101047916 1.14629407 1.237716841 1.70485739 1.090240982 1 11.33862696 -1.107365468 0.862454285 1.066847539 199.9999479 0.853587696 0.075575482 151.3704173 0.464139739 0.012462246 59031.40052 0.078097032 1.107365468 198.9331004 EAYSGCSGPVDSECPPPPS(ph)SPVHKAELEK ddPTM_HeLa_CUDC101_4h_R1 1 EAYSGCSGPVDSECPPPPSSPVHKAELEK 29 1 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 EAYSGCSGPVDS(0.004)ECPPPPS(0.498)S(0.498)PVHKAELEK 67.655 0.00011403 13438000 909.02 1237.3 933.3 773.84 1565.2 1164.2 1372.7 1920.8 1286 202.69 TRUE FALSE FALSE 802.4660536 1275.419746 983.7570211 805.40054 1449.738314 1141.994825 1425.645499 2139.456108 1232.990536 201.4843909 3.982770328 6.330116894 4.882547064 3.997334665 7.195288469 5.667907175 7.075711884 10.61847073 6.119533778 1 7.654524266 -1.107299251 0.133803753 2.01E-23 30.7116463 0.40896143 1.843468622 23.49604153 0.216134198 3.771650599 136.7190599 0.078108941 1.107299251 30.7116463 DPSPES(ph)NKKGESPSLESR ddPTM_HeLa_CUDC101_4h_R1 1 DPSPESNKKGESPSLESR 18 2 E7EX82;Q8NDX5-2;Q8NDX5;Q8NDX5-7;Q8NDX5-3 E7EX82 PHC3 Polyhomeotic-like protein 3 1 0 DPS(0.176)PES(0.823)NKKGES(0.001)PSLESR 77.027 0.01029 12330000 2538.1 2415.7 2259.8 2731 2448.5 2609.5 2385.7 2816.4 2652.5 2452.1 TRUE FALSE FALSE 2240.587766 2490.124854 2381.971624 2842.381984 2267.879033 2559.728135 2477.717248 3137.007592 2543.162827 2437.5148 0.919209912 1.021583481 0.977213194 1.166098349 0.930406262 1.0501385 1.016493212 1.286969659 1.043342517 1 11.25119526 -1.09899865 0.972945101 0.979415779 200 0.530541675 0.07187126 550.389714 1.027464971 0.010758538 243740.2635 0.079616183 1.09899865 199.0205842 EDLVGPEVGAS(ph)PQSGR ddPTM_HeLa_CUDC101_4h_R1 2 EDLVGPEVGASPQSGR 16 0 Q86X27-3;Q86X27;H7C2H2 Q86X27-3 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 EDLVGPEVGAS(0.884)PQS(0.116)GR;EDLVGPEVGAS(0.981)PQS(0.019)GR ; 98.227 0.0050116 22687000 3650.81 3044.8 3114.92 2731.19 3166.77 3083.48 2410.19 2440.13 3260.7 3509.1 TRUE FALSE FALSE 3222.867586 3138.606679 3283.321997 2842.579733 2933.163686 3024.667756 2503.151836 2717.904536 3126.292566 3488.227717 0.923926947 0.899771154 0.941257929 0.814906584 0.840875059 0.867107311 0.717599893 0.779164881 0.896240962 1 11.76827851 -1.094072053 0.140124979 1.041227821 2.05E-10 0.624695581 0.04815714 19.09642312 0.181106614 0.093859431 3.980965805 0.080524483 1.094072053 -1.04122782 KDS(ph)LPDADLASCGSLSQSSASFFTPR ddPTM_HeLa_CUDC101_4h_R1 1 KDSLPDADLASCGSLSQSSASFFTPR 26 1 Q86SQ0-2;Q86SQ0-3;Q86SQ0;G5E9V3;E9PFQ4;A0A1W2PQ63;E9PGF6 Q86SQ0-2 PHLDB2 Pleckstrin homology-like domain family B member 2 1 0 KDS(0.961)LPDADLAS(0.032)CGS(0.006)LS(0.001)QSSASFFTPR 41.609 0.038769 2853600 561.78 595.67 527.95 467.44 981.93 649.09 871.62 867.18 710.34 221.19 TRUE FALSE FALSE 495.929 614.0218867 556.492574 486.5042236 909.4949802 636.7096897 905.2386754 965.8962659 681.0594845 219.874352 2.255510911 2.792603507 2.530957198 2.212646537 4.136430519 2.895788817 4.117072623 4.392946503 3.097493992 1 7.780535516 -1.093604432 0.108936361 2.40E-11 13.17004637 0.401544974 0.769910322 26.69039561 0.208374372 2.657411521 52.92267532 0.080611234 1.093604432 13.17004637 RLGDS(ph)SLSR ddPTM_HeLa_CUDC101_4h_R1 1 RLGDSSLSR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 RLGDS(0.492)S(0.492)LS(0.015)R 99.343 0.0097885 17416000 1668.4 1231.6 1757.8 1668.1 1638.6 1469.9 1680.7 2199.2 1332.2 1320.1 TRUE FALSE FALSE 1472.832681 1269.544136 1852.831985 1736.132328 1517.723743 1441.864107 1745.525162 2449.548039 1277.286152 1312.247986 1.122373741 0.967457485 1.411952622 1.323021522 1.156583023 1.098774105 1.330179341 1.866680737 0.973357296 1 10.35782467 -1.093350025 0.830406038 1.093555657 200 0.709020942 0.140540548 200.6049211 0.687388078 0.023479854 75143.35261 0.080658469 1.093350025 198.9064443 YESGPDGGEEDGTGS(ph)LKR ddPTM_HeLa_CUDC101_4h_R1 2 YESGPDGGEEDGTGSLKR 18 1 Q07866-6;G3V5R9;G3V3H3 Q07866-6 KLC1 Kinesin light chain 1 1 0 YESGPDGGEEDGT(0.143)GS(0.857)LKR;YESGPDGGEEDGT(0.048)GS(0.952)LKR ; 107.39 0.00033016 32241000 3275 2643.7 2556.1 2452.4 3000.7 2406.2 2535.8 1960.98 2589 3005.9 TRUE FALSE FALSE 2891.109465 2725.149263 2694.290498 2552.419472 2779.344339 2360.305744 2633.606655 2184.210037 2482.280324 2988.020773 0.967566722 0.912024872 0.901697378 0.854217446 0.930162322 0.789922803 0.881388335 0.730988906 0.830743998 1 11.54497446 -1.093006334 0.166981556 1.02938647 2.13E-10 0.241166735 0.067189336 17.4837877 0.186777102 0.057058437 4.470020619 0.080722326 1.093006334 -1.02938647 FYDPS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 FYDPSPPR 8 0 Q3V6T2;H0Y470;A0A2U3TZV9;A0A2R8Y7B1;H7C2C6;A0A2R8Y820;A0A2R8YCU9;A0A2R8Y885;A0A2R8YDS8;A0A2R8Y7D4;H0Y7U8;A0A2R8Y5D7;Q3V6T2-5;Q3V6T2-4;Q3V6T2-2;Q3V6T2-3;H0Y7K3;A0A2R8Y802;A0A2R8Y4X4;A0A2R8Y4W8;A0A2R8YG73 Q3V6T2 CCDC88A Girdin 1 0 FYDPS(1)PPR 96.665 0.021897 13578000 5415.2 4844.7 4758.2 4754.8 5420.5 4528.9 4625 4139 5137.7 4580.5 TRUE FALSE FALSE 4780.438465 4993.959465 5015.442685 4948.721296 5020.640514 4442.518778 4803.387799 4610.16703 4925.921831 4553.254982 1.049894742 1.096788887 1.101507099 1.08685354 1.102648662 0.975679771 1.054934946 1.012499201 1.081846251 1 12.15268254 -1.085288908 21.67984636 1.040769605 0.01681866 0 0.046313312 0 0 0.006583805 0 0.082169585 1.085288908 -1.023950945 IERET(ph)WRESGVS(ph)LIAT(ph)VT(ph)RLMER ddPTM_HeLa_CUDC101_4h_R1 1 IERETWRESGVSLIATVTRLMER 23 3 A0A590UJM5;C9J637;A0A590UJ51;H0Y7H7;H0Y599;Q8N1I0-2;Q8N1I0;Q8N1I0-3;F8WES4;C9JDB3;C9J7D9 A0A590UJM5 DOCK4 Dedicator of cytokinesis protein 4 4 0 IERET(0.831)WRES(0.208)GVS(0.966)LIAT(0.997)VT(0.998)RLMER 40.381 0.0032747 0 1586 1072.1 1403.2 1468.7 1310.7 1341.6 1309.3 843.12 1719.1 1546.1 TRUE FALSE FALSE 1400.091484 1105.13013 1479.061236 1528.599934 1214.012272 1316.011215 1359.80014 939.0973728 1648.23797 1536.903728 0.910981904 0.719062691 0.962364271 0.994597063 0.789907819 0.856274333 0.884765984 0.611032009 1.072440609 1 10.58581108 -1.082149498 0.161476445 1.007232745 2.63E-25 0.44084651 0.10011581 48.4684267 0.505131217 0.166631158 11.63324571 0.082765721 1.082149498 -1.007232745 EEAS(ph)DDDMEGDEAVVR ddPTM_HeLa_CUDC101_4h_R1 7 EEASDDDMEGDEAVVR 16 0 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 1 0 EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR ;;;;;; 304.86 1.26E-123 550760700 46257.2 14047.38 15305 11085.45 7067.05 7293.41 7862 15061.6 7641.46 3550.55 TRUE FALSE FALSE 40835.00114 14480.16313 16132.4346 11537.56257 6545.727801 7154.300356 8165.239974 16776.15166 7326.475784 3529.431171 11.56985337 4.102690328 4.570831337 3.268958087 1.85461268 2.027040622 2.313471939 4.753216836 2.075823392 1 11.78521997 -1.08082911 15.82676211 4.907303614 2.924442359 0 3.090068051 0 0 0.565920483 0 0.083017737 1.08082911 -1.982861255 TSLSFK(ac)SDQVK ddPTM_HeLa_CUDC101_4h_R1 2 TSLSFKSDQVK 11 1 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 0 1 ; TSLSFK(1)SDQVK;TSLSFK(1)SDQVK 213.35 1.73E-13 3468900 3003.7 2258 1300.6 1706.48 1513.04 1733.28 1388.75 2620.8 1199.55 783.04 FALSE TRUE FALSE 2651.610839 2327.566304 1370.91437 1776.07763 1401.426054 1700.220572 1442.314553 2919.141278 1150.104041 778.3824433 3.40656558 2.990260538 1.761234958 2.281754484 1.800433792 2.184299744 1.852963881 3.750266085 1.477556504 1 9.60433536 -4.254084721 23.62871316 2.165816764 3.750267752 0.353458872 0.667895783 506.2921586 1626500.858 0.126043943 1.681850263 5.57E-05 4.254084721 1.584450989 IKPNLSSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 IKPNLSSSPR 10 1 A0A1P0AZG4;Q96JN0-3 A0A1P0AZG4 1 0 IKPNLS(0.001)S(0.126)S(0.873)PR 84.188 0.020923 29020000 3464.1 3468.8 3083.3 3342.1 3490.5 3635.2 3110 3601.8 3308.6 3348.2 TRUE FALSE FALSE 3058.043449 3575.669616 3249.992524 3478.405284 3233.012769 3565.864617 3229.953742 4011.814353 3172.218108 3328.284757 0.918804631 1.074328033 0.976476702 1.045104472 0.971375049 1.071382071 0.970455949 1.205369926 0.953108985 1 11.70056316 -1.074224733 1.015377424 0.978851022 200 0.542439194 0.05343114 838.328221 1.223258268 0.008402132 388113.1628 0.084289847 1.074224733 199.021149 QLEDPNGSFS(ph)NAEMSELSVAQKPEK ddPTM_HeLa_CUDC101_4h_R1 1 QLEDPNGSFSNAEMSELSVAQKPEK 25 1 H0YJA2;Q6PJT7-5;Q6PJT7-2;Q6PJT7;G3V411 H0YJA2 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 0 QLEDPNGS(0.008)FS(0.516)NAEMS(0.367)ELS(0.108)VAQKPEK 76.049 0.0001519 6649200 999.33 921.11 621.01 840.77 1127 755.78 730.99 598.48 1027 1017.1 TRUE FALSE FALSE 882.1900523 949.4883073 654.5836791 875.0602347 1043.863455 741.3647557 759.1845292 666.6085441 984.6666253 1011.050244 0.872548182 0.939110903 0.647429426 0.86549629 1.03245458 0.733262031 0.750887044 0.659322866 0.97390474 1 9.981638978 -1.054926436 0.085571978 1.138055467 2.21E-12 0.408440465 0.103364095 121.2558731 0.765368813 1.470740186 16.32246874 0.088119812 1.054926436 -1.138055467 LSSSSSNDS(ph)GNKVGIQLPEVELSVSTK ddPTM_HeLa_CUDC101_4h_R1 2 LSSSSSNDSGNKVGIQLPEVELSVSTK 27 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 LS(0.03)S(0.029)S(0.025)S(0.064)S(0.188)NDS(0.664)GNKVGIQLPEVELSVSTK;LS(0.015)S(0.05)S(0.044)S(0.039)S(0.097)NDS(0.756)GNKVGIQLPEVELSVSTK ; 67.218 0.00038506 32742000 1148.98 1083.47 997.31 941.51 1426.11 1226.58 1201.78 1850.03 1184.3 1013.72 TRUE FALSE FALSE 1014.298306 1116.850426 1051.227595 979.9088474 1320.908707 1203.18503 1248.133057 2060.629937 1135.482653 1007.690348 1.006557528 1.108327006 1.043204986 0.972430518 1.310827983 1.194002733 1.238607732 2.044903914 1.126817037 1 9.976836668 -1.051204047 0.78187272 1.021638738 199.9999998 0.882550528 0.102527608 79.98823006 0.310390523 0.015075608 28120.9144 0.088878344 1.051204047 198.978361 up SLDS(ph)DESEDEEDDY(ph)QQKR ddPTM_HeLa_CUDC101_4h_R1 2 SLDSDESEDEEDDYQQKR 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 0 S(0.081)LDS(0.838)DES(0.082)EDEEDDY(0.999)QQKR;S(0.049)LDS(0.906)DES(0.385)EDEEDDY(0.66)QQKR ; 66.536 0.021256 557310000 8232.6 7712.5 7785.3 6703.1 8395.9 7741.9 7518.5 9340.4 9024.2 6769.7 TRUE FALSE FALSE 7267.587108 7950.112983 8206.196867 6976.481391 7776.551184 7594.236156 7808.491064 10403.67338 8652.218656 6729.433523 1.079970117 1.181394089 1.219448389 1.03671154 1.155602646 1.128510465 1.160348941 1.545995416 1.285727636 1 12.71626935 -1.041658949 0.888662876 1.067369839 199.9976259 0.539649002 0.099081923 282.5271664 0.676974528 0.012750995 113871.6645 0.090853372 1.041658949 198.9302561 TSPDTLRR ddPTM_HeLa_CUDC101_4h_R1 3 TSPDTLRR 8 1 J3QL05;J3KP15;Q01130-2;Q01130 J3QL05 SRSF2 Serine/arginine-rich splicing factor 2 0 0 ;; ;; 111.74 0.011293 22059600 13790.3 11318.18 12471.2 13946 13533.2 12508.91 11868.5 10938.39 13611.6 12740.45 FALSE FALSE TRUE 12173.82194 11666.87971 13145.4308 14514.77816 12534.8828 12270.32338 12326.27202 12183.5721 13050.52409 12664.66924 0.961242786 0.921214719 1.037960846 1.146084267 0.989752086 0.968862522 0.973280217 0.962012657 1.030467029 1 13.62852178 -5.283455036 6.777283789 0.994117554 0.968522793 0.051827805 0.057312223 0.572996002 116.1474047 0.008770259 0.02032016 5.21E-06 5.283455036 -0.025594761 S(ph)AGEEEDGPVLTDEQK ddPTM_HeLa_CUDC101_4h_R1 4 SAGEEEDGPVLTDEQK 16 0 A0A0C4DG62;F5GYV5;H7BZV4;F8WCT1;Q66PJ3-7;Q66PJ3-4;Q66PJ3-3;F5H7X4;Q66PJ3-2;Q66PJ3 A0A0C4DG62;Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 0 S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK ;;; 358.55 1.49E-245 714348000 18174.5 16605.5 15663.7 15675.4 17267.2 14500.2 13825.2 12874.3 18910.7 17599.4 TRUE FALSE FALSE 16044.11266 17117.09577 16510.527 16314.71057 15993.43306 14223.63284 14358.4426 14339.85827 18131.19294 17494.71799 0.91708324 0.978415073 0.943743535 0.932550646 0.914186389 0.813024414 0.820730154 0.819667873 1.036380978 1 14.09463179 -1.034215023 0.208810558 0.989625546 1.17E-11 0.797898488 0.033469089 17.65244367 0.209225438 0.028872051 5.823725766 0.092424046 1.034215023 -0.989625546 SPSPPLPT(ph)HIPPEPPRT(ph)PPFPAK ddPTM_HeLa_CUDC101_4h_R1 1 SPSPPLPTHIPPEPPRTPPFPAK 23 1 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 2 0 S(0.31)PS(0.31)PPLPT(0.38)HIPPEPPRT(1)PPFPAK 92.474 9.28E-05 41929000 5606 4707.5 5685.1 5484.3 6064.8 5873.3 5440.8 6323.6 5978.6 5922.3 TRUE FALSE FALSE 4948.873178 4852.532495 5992.453702 5707.973459 5617.411787 5761.276588 5650.653479 7043.453063 5732.159577 5887.073896 0.840633779 0.824268997 1.017900201 0.969577342 0.954194203 0.978631607 0.959840759 1.196426814 0.973685685 1 12.52333502 -1.033619464 0.970951966 0.927110299 199.969212 0.5846288 0.062104179 774.965266 1.24766487 0.011600896 342806.8194 0.092550877 1.033619464 199.0421017 AAEAAAAPAESAAPAAGEEPS(ph)KEEGEPK ddPTM_HeLa_CUDC101_4h_R1 1 AAEAAAAPAESAAPAAGEEPSKEEGEPK 28 1 P80723 P80723 BASP1 Brain acid soluble protein 1 1 0 AAEAAAAPAES(0.001)AAPAAGEEPS(0.999)KEEGEPK 82.413 8.66E-07 7283800 1871.8 1457.2 1674.4 1581.8 1771.4 1567.9 1737.7 2055.5 1299.6 1419.3 TRUE FALSE FALSE 1652.390441 1502.094605 1764.923129 1646.312641 1640.727351 1537.99492 1804.723671 2289.489811 1246.029938 1410.85794 1.171195479 1.064667506 1.250957363 1.166887604 1.162928814 1.090113239 1.279167533 1.622764238 0.883171794 1 10.46235701 -1.027472013 0.865567851 1.099151532 199.9999998 0.726178007 0.098199578 236.1143158 0.611887052 0.013671566 92567.31256 0.093870253 1.027472013 198.9008483 DLPS(ph)PDSR ddPTM_HeLa_CUDC101_4h_R1 2 DLPSPDSR 8 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 DLPS(0.998)PDS(0.002)R;DLPS(0.999)PDS(0.001)R ; 107.45 0.012772 71069000 10113.5 8016.5 9056 8769.5 9640.9 8786.7 7763.9 5676.5 10064.1 10574.2 TRUE FALSE FALSE 8928.010861 8263.478863 9545.594753 9127.158115 8929.710014 8619.108337 8063.356224 6322.689815 9649.253538 10511.30419 0.849372323 0.786151624 0.908126583 0.868318332 0.849533974 0.819984674 0.767112822 0.601513352 0.917988231 1 13.35965406 -1.026935815 0.097476651 1.089754715 4.55E-21 0.642978833 0.060549863 59.31863353 0.416380366 0.566099114 8.679263799 0.09398622 1.026935815 -1.089754715 VS(ph)PSFSAELK ddPTM_HeLa_CUDC101_4h_R1 2 VSPSFSAELK 10 0 Q13416 Q13416 ORC2 Origin recognition complex subunit 2 1 0 VS(0.874)PS(0.126)FSAELK;VS(0.999)PS(0.001)FSAELK ; 161.93 5.11E-05 24247000 4031.2 3579 3077.3 3179.7 3798.3 3598.4 3774.4 3989.6 4070.5 3945.6 TRUE FALSE FALSE 3558.668847 3689.264748 3243.668146 3309.38191 3518.106976 3529.766515 3919.979872 4443.759937 3902.712267 3922.131396 0.907330349 0.940627525 0.827016696 0.843771301 0.896988556 0.899961312 0.99945144 1.132996192 0.995048833 1 11.93742215 -1.015323054 13.71340109 0.943159409 1.172602603 0 0.085898337 0 0 0.011733431 0 0.096533254 1.015323054 0.229443194 SSGDPEQIKEDSLS(ph)EESADAR ddPTM_HeLa_CUDC101_4h_R1 1 SSGDPEQIKEDSLSEESADAR 21 1 Q9BVS4-2;Q9BVS4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 0 SSGDPEQIKEDS(0.384)LS(0.578)EES(0.038)ADAR 94.301 0.00023982 7589300 2780.6 2548.9 2367.1 2192.2 2423.6 2164.3 2094.2 1834.9 2197.8 2718.7 TRUE FALSE FALSE 2454.662283 2627.428588 2495.072586 2281.607391 2244.815856 2123.019583 2174.973996 2043.777599 2107.205754 2702.529051 0.908283403 0.972211043 0.923236176 0.844248979 0.830635236 0.785567719 0.804792087 0.756246301 0.779716226 1 11.40009441 -1.012498566 0.145482777 1.029226329 5.53E-05 0.217399992 0.071556805 17.71738517 0.168885037 0.07575592 3.835697973 0.097163116 1.012498566 -1.029171009 FRDQDLAS(ph)CDRDR ddPTM_HeLa_CUDC101_4h_R1 2 FRDQDLASCDRDR 13 2 Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2;Q9Y383 Q96HJ9-2 LUC7L2 Putative RNA-binding protein Luc7-like 2 1 0 FRDQDLAS(1)CDRDR;FRDQDLAS(1)CDRDR ; 88.19 0.017009 50368000 2458.6 2093.6 2364.79 1908.95 2639.4 2482.7 2591 3496.2 2306.8 2150.8 TRUE FALSE FALSE 2170.406635 2158.101334 2492.6377 1986.805232 2444.69672 2435.346634 2690.935738 3894.193276 2211.712728 2138.006946 1.015154155 1.009398654 1.165869786 0.929279129 1.143446575 1.139073303 1.258618801 1.821412827 1.034474061 1 11.06205082 -1.009985457 0.800344101 1.01616166 199.9999972 0.927122606 0.065321809 74.21907627 0.247371282 0.009475327 26789.23019 0.097726995 1.009985457 198.9838356 S(ph)LEEMSLR ddPTM_HeLa_CUDC101_4h_R1 2 SLEEMSLR 8 0 Q92614;A0A0D9SFK2;Q92614-3;Q92614-4 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 S(1)LEEMSLR;S(1)LEEMSLR ; 136.52 0.0048872 11407400 1786.66 1595.69 1933.14 1792.27 1648.34 1724.46 1672.92 1374.25 1650.75 1674.68 TRUE FALSE FALSE 1577.230423 1644.851318 2037.651396 1865.366517 1526.745242 1691.568799 1737.445085 1530.689065 1582.705386 1664.718929 0.947445479 0.988065486 1.224021281 1.120529409 0.91711893 1.016128771 1.043686748 0.919487992 0.9507343 1 10.7010629 -1.005571381 11.93044822 1.000791971 0.002305993 0 0.092395499 0 0 0.012551732 0 0.098725336 1.005571381 -0.998485977 RAS(ph)PNSDDTVLSPQELQK ddPTM_HeLa_CUDC101_4h_R1 2 RASPNSDDTVLSPQELQK 18 1 Q9UH62 Q9UH62 ARMCX3 Armadillo repeat-containing X-linked protein 3 1 0 RAS(0.76)PNS(0.24)DDTVLSPQELQK;RAS(0.98)PNS(0.02)DDTVLSPQELQK ; 200.2 3.52E-17 79264000 9791.7 8908.7 8875.4 8442.3 10083.4 9251.5 7875.1 7881.8 9267 8741.3 TRUE FALSE FALSE 8643.931769 9183.166488 9355.230971 8786.613485 9339.567671 9075.043052 8178.845245 8779.032253 8885.010338 8689.306359 0.994778111 1.056835391 1.076637258 1.011198492 1.074834663 1.044392116 0.941254101 1.010326013 1.022522394 1 13.0850253 -1.005008841 11.88307075 1.011837377 0.002073396 0 0.040966227 0 0 0.005701195 0 0.098853297 1.005008841 -1.009763981 ATPATAPGTS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 ATPATAPGTSPR 12 0 Q96P47;Q96P47-2;Q96P47-4;Q96P47-5;H0Y873 Q96P47 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" 1 0 ATPATAPGT(0.122)S(0.878)PR;ATPATAPGT(0.031)S(0.969)PR ; 141.34 0.0012067 127792000 9209.2 7671.7 8859.6 8404.5 8528.1 8195.1 7922.8 6944.1 8178.6 7842.2 TRUE FALSE FALSE 8129.711536 7908.055984 9338.576775 8747.271837 7898.999053 8038.792121 8228.38505 7734.588275 7841.474646 7795.554246 1.04286511 1.014431525 1.197936219 1.12208466 1.013269718 1.031202127 1.055522775 0.992179392 1.005890588 1 12.92843588 -1.004242937 11.87886837 1.03884215 0.00183543 0 0.062140803 0 0 0.008599909 0 0.099027785 1.004242937 -1.03700672 RAGDLLEDS(ph)PKRPK ddPTM_HeLa_CUDC101_4h_R1 1 RAGDLLEDSPKRPK 14 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 0 RAGDLLEDS(1)PKRPK 66.568 0.035326 3618900000 2261.8 3029.8 2914.9 2687.6 2688.4 2357.4 2381.9 2166.8 2581.5 2673.1 TRUE FALSE FALSE 1996.675233 3123.144547 3072.488311 2797.211945 2490.082088 2312.436523 2473.770681 2413.459753 2475.089477 2657.200282 0.751420676 1.175351579 1.156287816 1.052691422 0.937107415 0.870253002 0.930968846 0.908271676 0.931465157 1 11.37569126 -1.00334859 24.98531267 0.933453549 0.001297648 0 0.128297993 0 0 0.020504312 0 0.099231924 1.00334859 -0.932155901 DGYGGSRDS(ph)YSSSR ddPTM_HeLa_CUDC101_4h_R1 1 DGYGGSRDSYSSSR 14 1 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 0 DGYGGSRDS(0.999)YSSSR 156.72 0.0003445 33406000 5797.9 5167.5 4844.7 4995.7 5809.5 5058.3 5679.3 4610.2 4870.8 4976.8 TRUE FALSE FALSE 5118.278951 5326.70455 5106.619136 5199.446239 5380.944759 4961.821355 5898.352503 5135.006533 4670.023562 4947.197772 1.034581431 1.076711463 1.032224579 1.050988151 1.087675287 1.002955933 1.192261311 1.037962655 0.943973493 1 12.27239586 -1.003020567 0.078754922 0.933540111 1.376430674 0.35013266 0.050253318 153.0237 0.888724268 0.787872896 7.429090547 0.099306902 1.003020567 0.442890563 RVPPPALS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 RVPPPALSR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 RVPPPALS(1)R 66.538 0.039411 10432000 3097.5 2595.9 2234.7 2963.7 2754 2293.1 2646.1 2123.4 2119.5 2297 TRUE FALSE FALSE 2734.415746 2675.876602 2355.514642 3084.572496 2550.842907 2249.362938 2748.160963 2365.119273 2032.133313 2283.337342 1.197552239 1.171914703 1.031610441 1.350905291 1.117155516 0.985120725 1.203572032 1.035816841 0.88998383 1 11.1569283 -1.002432227 24.98173192 1.111007901 0.00121513 0 0.128971259 0 0 0.015154335 0 0.099441524 1.002432227 -1.109792771 MVS(ph)MGAVS(ph)KET(ph)PVVT(ph)IV ddPTM_HeLa_CUDC101_4h_R1 1 MVSMGAVSKETPVVTIV 17 1 H3BSB5 H3BSB5 MTHFSD 4 0 MVS(1)MGAVS(1)KET(1)PVVT(1)IV 61.344 0.023104 13728000 188.96 203.04 224.2 135.53 121.04 167.69 117.91 250.99 279.04 159.98 TRUE FALSE FALSE 166.8103952 209.2954217 236.3209302 141.0574992 112.1111203 164.4915926 122.4578282 279.5616871 267.5378531 159.0284318 1.048934416 1.316088069 1.486029432 0.886995474 0.704975325 1.034353359 0.770037325 1.757935256 1.682327179 1 7.31314091 -1.001649447 0.013143539 1.26E-06 2.357350731 0 0.373813032 30256.84211 31.04378191 2294.146782 3371.98774 0.099620921 1.001649447 2.357349472 DSENT(ph)PVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSR ddPTM_HeLa_CUDC101_4h_R1 1 DSENTPVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSR 40 3 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 DS(0.024)ENT(0.542)PVKGGT(0.433)VADLDEQDEET(0.001)VTAGGKEDEDPAKGDQSR 57.443 8.59E-05 24502000 1193.5 1606.5 1018 1228 1281.2 1282.7 1032.4 1033.3 1325.6 1206.8 TRUE FALSE FALSE 1053.599739 1655.994361 1073.036159 1278.083148 1186.688429 1258.234635 1072.220014 1150.926695 1270.958207 1199.6219 0.878276513 1.380430251 0.894478635 1.065404981 0.98921871 1.04885934 0.893798299 0.959407873 1.059465659 1 10.22836405 -1.001394554 19.70097369 0.980874401 0.000567492 0 0.142848824 0 0 0.018107904 0 0.099679407 1.001394554 -0.98030691 QVAEQGGDLS(ph)PAANR ddPTM_HeLa_CUDC101_4h_R1 2 QVAEQGGDLSPAANR 15 0 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 QVAEQGGDLS(1)PAANR;QVAEQGGDLS(1)PAANR ; 179.74 7.49E-08 430770000 6167.2 5519.3 5134.1 4802.5 5393.6 5290.5 4871 5758.2 6006.9 5125.9 TRUE FALSE FALSE 5444.290165 5689.343091 5411.664976 4998.366708 4995.724874 5189.592527 5058.876102 6413.690213 5759.29304 5095.410919 1.068469305 1.116562174 1.062066448 0.980954586 0.980436113 1.018483614 0.992829859 1.258718936 1.130290203 1 12.31498278 -1.000885594 0.006586429 2.42E-08 2.191007351 0 0.085537781 65445.55987 33.67553467 5084.168468 6167.861382 0.099796292 1.000885594 2.191007327 AHS(ph)PALGVHSFSGVQR ddPTM_HeLa_CUDC101_4h_R1 1 AHSPALGVHSFSGVQR 16 0 Q9H1A4 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 0 AHS(0.998)PALGVHSFS(0.002)GVQR 68.411 0.022467 8030100 1390 777.19 821.35 945.78 1417.8 1410 949.34 660.85 1326.4 995.17 TRUE FALSE FALSE 1227.066307 801.1343027 865.7546654 984.3529964 1313.211719 1383.106599 985.9563618 736.0784928 1271.725231 989.2506846 1.240399755 0.809839523 0.875162058 0.995049093 1.327481233 1.3981356 0.996669881 0.744076809 1.285543948 1 9.950192348 -1.000468736 0.002907679 1.547616291 0.592859603 0.002588443 0.218155793 3124589.29 710.7101998 111845.2992 121721.3601 0.099892128 1.000468736 -0.954756688 SQSSDT(ph)EQQSPTSGGGK ddPTM_HeLa_CUDC101_4h_R1 2 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 0 SQSS(0.01)DT(0.902)EQQS(0.088)PTSGGGK;SQSS(0.064)DT(0.936)EQQSPTSGGGK ; 381.08 0 460020000 7813.6 6345.18 6905 6962.5 6706 6314.13 6829.96 6810.49 7418.5 6713 TRUE FALSE FALSE 6897.701653 6540.667475 7278.305186 7246.460844 6211.31174 6193.69849 7093.393845 7585.768653 7112.70629 6673.070777 1.033662295 0.980158565 1.090698035 1.085925968 0.930802617 0.928163165 1.062987953 1.136773295 1.06588204 1 12.70413509 -1.000367098 0.004396312 0.036412994 2.073060785 0 0.066834522 201374.0816 68.97092405 14973.68326 17041.62682 0.099915508 1.000367098 2.036647791 TEKGESSS(ph)PSPSAEK ddPTM_HeLa_CUDC101_4h_R1 1 TEKGESSSPSPSAEK 15 1 E9PHV5;P28290-3;P28290;P28290-2 E9PHV5 SSFA2 Sperm-specific antigen 2 1 0 TEKGES(0.002)S(0.005)S(0.472)PS(0.472)PS(0.049)AEK 82.755 0.0097537 5410700 2182.6 1303.6 2067.9 2432.4 2526.8 2061.7 2032.6 927.2 2245.2 2293.5 TRUE FALSE FALSE 1926.758937 1343.762371 2179.696929 2531.603786 2340.402998 2022.376508 2110.998063 1032.7487 2152.651906 2279.85816 0.845122285 0.589406128 0.956066902 1.110421618 1.026556406 0.887062425 0.925933946 0.452988137 0.944204312 1 11.15472836 -1.000220574 0.028188759 1.48665241 1.83E-05 0.093252436 0.182832221 3150.5009 6.88774842 119.8051494 273.0124238 0.099949224 1.000220574 -1.486634144 EGPYSISVLYGDEEVPRS(ph)PFK ddPTM_HeLa_CUDC101_4h_R1 4 EGPYSISVLYGDEEVPRSPFK 21 1 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 1 0 EGPYSISVLYGDEEVPRS(1)PFK;EGPYSISVLYGDEEVPRS(1)PFK;EGPYSISVLYGDEEVPRS(0.999)PFK;EGPYSISVLYGDEEVPRS(1)PFK ;;; 120.44 5.20E-07 599781000 9414.09 8577.54 8264.14 9116.23 10846.6 10534.7 8655.24 4851.38 9982.6 9801.8 TRUE FALSE FALSE 8310.584641 8841.803841 8710.924406 9488.029263 10046.46793 10333.76815 8989.075506 5403.641489 9571.113003 9743.498458 0.852936415 0.907456791 0.894024302 0.973780548 1.031094526 1.060580878 0.922571656 0.554589454 0.982307643 1 13.25022416 -1.000212594 0.014472039 1.66712112 3.23E-05 0.109420285 0.12804449 14167.67578 15.99754644 744.533556 1137.744141 0.09995106 1.000212594 -1.667088849 LAGS(ph)PPGSGQWKPK ddPTM_HeLa_CUDC101_4h_R1 1 LAGSPPGSGQWKPK 14 1 H3BLU1;Q4KMQ1 H3BLU1 TPRN Taperin 1 0 LAGS(0.999)PPGS(0.001)GQWKPK 125.73 0.005581 15271000 4312.5 4400.1 4087 3990.5 3901.6 3476.5 4112.2 3220 3624.9 3677.9 TRUE FALSE FALSE 3806.995287 4535.661866 4307.955582 4153.249838 3613.786741 3410.191555 4270.808931 3586.551784 3475.480088 3656.023687 1.041293934 1.240599693 1.178317197 1.136001895 0.9884473 0.932759699 1.1681568 0.980997961 0.950617497 1 11.8360597 -1.00019253 12.08667184 1.050990868 7.98E-05 0 0.104248001 0 0 0.013782695 0 0.099955678 1.00019253 -1.050911033 LSLEGDHST(ph)PPSAYGSVK ddPTM_HeLa_CUDC101_4h_R1 1 LSLEGDHSTPPSAYGSVK 18 0 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4;H0YMW4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LSLEGDHS(0.312)T(0.687)PPSAYGSVK 140.75 0.00041212 9652100 2939 2252 1978.8 2129.2 3429.4 3017.4 2082 1673.4 2869 2798.5 TRUE FALSE FALSE 2594.494875 2321.381451 2085.779914 2216.037979 3176.419994 2959.848122 2162.303437 1863.893092 2750.738606 2781.854398 0.932649415 0.834472664 0.749780404 0.796604589 1.14183546 1.063983839 0.777288502 0.670018206 0.98881473 1 11.4418312 -1.000153654 0.029231524 1.521213045 4.07E-06 0.132129395 0.134882305 2132.329474 4.831303482 81.65267942 191.7799788 0.099964626 1.000153654 -1.521208973 RWNSDDLNAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 RWNSDDLNASPK 12 1 O43156 O43156 TTI1 TELO2-interacting protein 1 homolog 1 0 RWNSDDLNAS(1)PK 73.593 0.0259 10100000 4062.7 2882.2 3348.4 3032.4 3708.6 3908.1 3185.4 2517.7 3321.7 3749.1 TRUE FALSE FALSE 3586.476465 2970.997166 3529.424632 3156.074379 3435.023967 3833.559504 3308.261945 2804.304791 3184.77812 3726.800186 0.962347399 0.797197869 0.947038869 0.846859027 0.921708649 1.028646375 0.887695014 0.752469854 0.854561007 1 11.86372176 -1.000095472 0.024508641 1.592470686 3.61E-08 0 0.088726685 1773.713391 3.377995434 76.44132973 156.545256 0.099978019 1.000095472 -1.59247065 EANLQQNEEKNHSDSSTSESEVSSVS(ph)PLK ddPTM_HeLa_CUDC101_4h_R1 1 EANLQQNEEKNHSDSSTSESEVSSVSPLK 29 1 Q9NY27-2;Q9NY27-3;Q9NY27;H7C559;C9IZ04 Q9NY27-2 PPP4R2 Serine/threonine-protein phosphatase 4 regulatory subunit 2 1 0 EANLQQNEEKNHS(0.005)DS(0.015)S(0.015)T(0.046)S(0.046)ES(0.046)EVS(0.2)S(0.2)VS(0.426)PLK 40.15 0.032027 22024000 2663.1 1710.5 1832.6 1757.9 3098.2 3124 2258.1 3139.5 3356.5 2681 TRUE FALSE FALSE 2350.935455 1763.198478 1931.675899 1829.59476 2869.651958 3064.414905 2345.195673 3496.88799 3218.143649 2665.053293 0.8821345 0.661599707 0.724816988 0.686513386 1.076770947 1.149851267 0.879980779 1.312126853 1.207534445 1 11.37994867 -1.000028534 0.795383087 0.898560928 92.98579536 0.290589526 0.182234235 446.1695519 1.493248282 0.027051413 74049.87998 0.09999343 1.000028534 92.08723444 QAEVANQETKEDLPAENGET(ph)KTEESPASDEAGEKEAK ddPTM_HeLa_CUDC101_4h_R1 1 QAEVANQETKEDLPAENGETKTEESPASDEAGEKEAK 37 3 P05114;A6NEL0;A6NL93 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 QAEVANQET(0.001)KEDLPAENGET(0.488)KT(0.13)EES(0.378)PAS(0.003)DEAGEKEAK 67.235 1.43E-05 56608000 4555.9 4725.1 5604.1 4901.6 7737.4 6351.2 5510.1 7983.7 5392.7 4678.2 TRUE FALSE FALSE 4021.864308 4870.67473 5907.074597 5101.508435 7166.627417 6230.061442 5722.626403 8892.532137 5170.410623 4650.373858 0.864847522 1.047372723 1.270236497 1.097010389 1.541086294 1.339690449 1.230573407 1.912218761 1.111826873 1 12.18313099 -1.000022691 0.271500504 0.909047307 7.077605486 0.636764759 0.173190211 19.20770797 0.243797986 0.07792262 56.35461593 0.099994775 1.000022691 6.168558179 GLMAGGRPEGQYS(ph)EDEDT(ph)DTDEYKEAK ddPTM_HeLa_CUDC101_4h_R1 4 GLMAGGRPEGQYSEDEDTDTDEYKEAK 27 2 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3;H0YC88 H0YE35 RIC8A Synembryn-A 2 0 GLMAGGRPEGQY(0.04)S(0.801)EDEDT(0.826)DT(0.293)DEY(0.04)KEAK;GLMAGGRPEGQY(0.232)S(0.759)EDEDT(0.986)DT(0.023)DEYKEAK;GLMAGGRPEGQY(0.636)S(0.674)EDEDT(0.673)DT(0.015)DEY(0.003)KEAK;GLMAGGRPEGQY(0.441)S(0.729)EDEDT(0.803)DT(0.022)DEY(0.006)KEAK ;;; 85.337 1.37E-05 47176000 12036.2 9742.4 9499.1 9918.6 11907.6 10433.6 10077.5 10735 9722.4 9517 TRUE FALSE FALSE 10625.33488 10042.5518 10012.65008 10323.12338 11029.20007 10234.59646 10466.19255 11957.02901 9321.638557 9460.392461 1.123138911 1.061536489 1.058375762 1.091193988 1.16582902 1.081836352 1.106316952 1.26390412 0.985333177 1 13.20768432 -1.000019793 0.015656085 4.29E-09 2.454364659 0.583740457 0.049199175 2865.119198 3.497940461 217.6974689 344.4144702 0.099995442 1.000019793 2.454364655 EQYVPPRS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 EQYVPPRSPK 10 1 Q71RC2-6;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;X6RLN4;Q71RC2-2 Q71RC2-6 LARP4 La-related protein 4 1 0 EQYVPPRS(1)PK;EQYVPPRS(1)PK ; 81.239 0.023419 111913000 7129.5 7096.9 7150.1 7916.2 8320.8 8039.3 7860.1 8562 7949.4 8671.2 TRUE FALSE FALSE 6293.790818 7315.547077 7536.656034 8239.056853 7706.991161 7885.963747 8163.26669 9536.663471 7621.722367 8619.623317 0.730170053 0.848708442 0.874360254 0.955848829 0.894121573 0.914884962 0.947056082 1.106389818 0.88422917 1 13.07340911 -1.00001975 0.724206049 0.872969122 35.26492264 0.505259527 0.066034782 284.5922641 1.280559982 0.01662207 15929.66333 0.099995452 1.00001975 34.39195352 VEPTLVTENS(ph)GNK ddPTM_HeLa_CUDC101_4h_R1 1 VEPTLVTENSGNK 13 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 VEPTLVT(0.001)ENS(0.999)GNK 103.85 0.00708 7939300 1327.6 1216.5 1066.7 1117.8 1321 1232.1 1046.6 792.33 1313.8 1382.2 TRUE FALSE FALSE 1171.980741 1253.978923 1124.369029 1163.388716 1223.552462 1208.599745 1086.967713 882.5256445 1259.644608 1373.978613 0.852983248 0.912662622 0.818330808 0.846729858 0.890517837 0.87963505 0.79110963 0.64231396 0.916786183 1 10.42414383 -1.000015605 0.050341934 1.305782061 7.91E-21 0.565725243 0.05922539 222.2587938 0.853140681 5.264266251 22.63793092 0.099996407 1.000015605 -1.305782061 T(ph)SSPRSPPSSSEIFTPAHEENVR ddPTM_HeLa_CUDC101_4h_R1 2 TSSPRSPPSSSEIFTPAHEENVR 23 1 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 0 T(0.429)S(0.429)S(0.071)PRS(0.071)PPSSSEIFTPAHEENVR;T(0.249)S(0.249)S(0.249)PRS(0.249)PPS(0.003)S(0.001)SEIFTPAHEENVR ; 124.76 1.36E-07 48282000 1674.99 1899.87 1861.13 1515.94 2549.6 2356.8 1994.45 2609.7 2044.95 2146.78 TRUE FALSE FALSE 1478.650211 1958.402743 1961.748317 1577.766586 2361.521088 2311.847967 2071.376605 2906.777699 1960.656295 2134.010857 0.69289723 0.917709831 0.919277571 0.73934328 1.106611562 1.083334679 0.970649516 1.362119452 0.918765848 1 11.0593518 -1.000015145 0.520125843 0.858293889 18.05872499 0.566601849 0.118512994 65.21094551 0.593507301 0.027380453 1244.12459 0.099996513 1.000015145 17.2004311 EMLAS(ph)DDEEDVSSKVEK ddPTM_HeLa_CUDC101_4h_R1 6 EMLASDDEEDVSSKVEK 17 1 E7ETM8;Q0ZGT2-4;E7EUA0;Q0ZGT2-2;Q0ZGT2;Q0ZGT2-3 E7ETM8 NEXN Nexilin 1 0 EMLAS(1)DDEEDVSSKVEK;EMLAS(1)DDEEDVSSKVEK;EMLAS(1)DDEEDVSSKVEK;EMLAS(1)DDEEDVSSKVEK;EMLAS(1)DDEEDVSSKVEK;EMLAS(0.993)DDEEDVS(0.003)S(0.004)KVEK ;;;;; 152.66 5.41E-05 917207000 16252.5 17065.7 15114.4 16292 19888.5 17185.3 17112.1 18048.3 18660.6 17572.5 TRUE FALSE FALSE 14347.40659 17591.47399 15931.53018 16956.45818 18421.36498 16857.51904 17772.11943 20102.84552 17891.40217 17467.97799 0.821354744 1.007069851 0.912042034 0.970716713 1.054579127 0.965052684 1.017411371 1.15083987 1.024240023 1 14.092425 -1.000012405 0.449499695 0.922696312 5.871263679 0.347129992 0.066538324 54.91069438 0.593180132 0.016582383 251.4464626 0.099997144 1.000012405 4.948567367 DIKFDDS(ph)DTEQIAEEGDDNLANSASPSKR ddPTM_HeLa_CUDC101_4h_R1 1 DIKFDDSDTEQIAEEGDDNLANSASPSKR 29 2 Q9Y2I7;Q9Y2I7-2;Q9Y2I7-3;Q9Y2I7-4 Q9Y2I7 PIKFYVE 1-phosphatidylinositol 3-phosphate 5-kinase 1 0 DIKFDDS(0.908)DT(0.092)EQIAEEGDDNLANSASPSKR 55.871 0.0013235 10325000 726.47 801.99 604.73 678.85 844.26 625.15 969.83 708.34 723.83 634.82 TRUE FALSE FALSE 641.3142879 826.6983613 637.423533 706.5364372 781.9806218 613.2263053 1007.236668 788.9745624 693.993421 631.0440624 1.016274974 1.310048554 1.01010939 1.119630909 1.239185452 0.971764639 1.596143166 1.250268578 1.0997543 1 9.301596934 -1.000010603 0.222764027 0.978209825 3.270889082 0.243351694 0.159578191 34.27567973 0.412029733 0.1031422 28.64027535 0.099997559 1.000010603 2.292679257 TDVSNFDEEFTGEAPTLS(ph)PPRDAR ddPTM_HeLa_CUDC101_4h_R1 1 TDVSNFDEEFTGEAPTLSPPRDAR 24 1 Q16512;Q16512-2 Q16512 PKN1 Serine/threonine-protein kinase N1 1 0 TDVSNFDEEFTGEAPT(0.15)LS(0.85)PPRDAR 125.15 7.71E-09 26415000 660.32 800.79 614.84 675.1 852.69 783.32 737.19 807.9 782.71 825.52 TRUE FALSE FALSE 582.9182906 825.4613907 648.0801102 702.633496 789.7887575 768.3794761 765.6236652 899.8680704 750.4463625 820.6097703 0.710347734 1.005912214 0.789754319 0.856233403 0.962441328 0.936351849 0.932993602 1.096584641 0.914498449 1 9.680552521 -1.000010358 0.633511247 0.868485872 18.54887215 0.31053754 0.087958065 201.3634652 1.278686224 0.019866668 4985.293583 0.099997615 1.000010358 17.68038627 (ac)SSSSSSPRET(ph)YEEDREYESQAK ddPTM_HeLa_CUDC101_4h_R1 1 SSSSSSPRETYEEDREYESQAK 22 2 B7WPG3;V9GYK2;Q8WVV9-2;Q8WVV9-5;Q8WVV9 B7WPG3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 1 0 S(0.025)S(0.025)S(0.025)S(0.025)S(0.022)S(0.022)PRET(0.456)Y(0.397)EEDREYESQAK 50.957 0.018522 18299000 429.31 367.34 561.08 308.84 632.08 579.64 486.41 634.78 386.92 607.17 TRUE FALSE FALSE 378.9869326 378.65731 591.413682 321.4358301 585.4527177 568.5843327 505.1709966 707.0407893 370.9709938 603.5585258 0.627920767 0.627374635 0.979877935 0.53256779 0.97000157 0.942053353 0.836987591 1.171453569 0.614639638 1 9.237349863 -1.000010294 0.844655361 0.806193972 119.7823144 0.317271981 0.168709077 706.8285457 1.900762159 0.028717469 161612.3119 0.09999763 1.000010294 118.9761205 TAS(ph)PSTSSIDSATDTR ddPTM_HeLa_CUDC101_4h_R1 1 TASPSTSSIDSATDTR 16 0 Q96P50-4;Q96P50-1;Q96P50 Q96P50-4 ACAP3 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3" 1 0 T(0.121)AS(0.858)PS(0.005)T(0.015)SSIDSATDTR 204.67 3.66E-17 9328900 767.03 838.36 945.84 784.67 834.89 851.64 758 400.4 1031.9 731.05 TRUE FALSE FALSE 677.1199061 864.1888779 996.9749714 816.6722342 773.301828 835.3963859 787.2363139 445.9799175 989.3646452 726.7016821 0.931771486 1.189193446 1.371917798 1.123806721 1.064125551 1.14957266 1.083300525 0.613704259 1.361445377 1 9.505219435 -1.000006797 7.352368065 1.024072912 3.24E-06 0 0.216885147 0 0 0.025471283 0 0.099998435 1.000006797 -1.024069669 AAPPPPALT(ph)PDSQTVDSSCK ddPTM_HeLa_CUDC101_4h_R1 1 AAPPPPALTPDSQTVDSSCK 20 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 AAPPPPALT(0.933)PDS(0.05)QT(0.01)VDS(0.003)S(0.003)CK 131.37 2.61E-06 0 2224 1969.8 1919.9 1917.3 2527.9 1965 1749.3 2174.4 2610.6 1861.8 TRUE FALSE FALSE 1963.306091 2030.487203 2023.695601 1995.495781 2341.421853 1927.520899 1816.771087 2421.924907 2502.989963 1850.725931 1.060830271 1.097130142 1.093460446 1.078223279 1.265137001 1.041494511 0.98165323 1.308635096 1.352436858 1 10.85387555 -1.000005035 0.016914996 2.09E-07 2.444204785 0 0.14353619 3861.872 5.091734269 286.7014592 470.5869137 0.099998841 1.000005035 2.444204576 KSKS(ph)PPKVPIVIQDDSLPAGPPPQIR ddPTM_HeLa_CUDC101_4h_R1 1 KSKSPPKVPIVIQDDSLPAGPPPQIR 26 3 Q7Z422-4;Q7Z422-5;Q7Z422 Q7Z422-4 SZRD1 SUZ domain-containing protein 1 1 0 KS(0.282)KS(0.718)PPKVPIVIQDDSLPAGPPPQIR 70.767 0.00023435 206630000 2004 1699.7 1951.3 1607.6 2036.4 1907.6 1851 2184.3 2133.2 1764.6 TRUE FALSE FALSE 1769.094158 1752.065742 2056.79318 1673.164877 1886.178829 1871.215708 1922.39369 2432.951883 2045.268593 1754.104081 1.008545717 0.99883796 1.172560513 0.95385724 1.075294704 1.066764355 1.095940492 1.387005429 1.165990442 1 10.77651864 -1.000005013 0.907881853 1.01546771 195.908404 0.610571926 0.074654047 292.1806812 0.582874626 0.008337166 118076.6453 0.099998846 1.000005013 194.8929363 EIKLPTEMEGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 5 EIKLPTEMEGKK 12 2 Q9NWX6 Q9NWX6 THG1L Probable tRNA(His) guanylyltransferase 0 1 ;;;; EIKLPTEMEGK(1)K;EIKLPTEMEGK(1)K;EIK(0.002)LPTEMEGK(0.998)K;EIKLPTEMEGK(1)K;EIKLPTEMEGK(1)K 149.69 0.00019513 34882800 9748.72 10197.36 10631.35 11153.72 14481.71 11573.51 13230.45 16893.8 8577.76 6153.44 FALSE TRUE FALSE 8605.98982 10511.52857 11206.11294 11608.61691 13413.4231 11352.76458 13740.75289 18816.9219 8224.181102 6116.839065 1.406934158 1.718457599 1.832010426 1.897813035 2.192868402 1.855985495 2.2463813 3.076249302 1.344514874 1 12.5785706 -1 0.149802245 0.759728767 8.144291946 0.833162605 0.222679633 15.2694811 0.147978869 0.435500745 24.60163521 0.1 1 7.384563179 up TEMDKSPFNSPSPQDS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 TEMDKSPFNSPSPQDSPR 18 1 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 0 TEMDKSPFNS(0.004)PS(0.01)PQDS(0.986)PR 78.057 0.0063766 106400000 992.91 959.49 1112 788.7 1111.1 1086.6 971.75 1042.9 1018.3 1089.5 TRUE FALSE FALSE 876.522595 989.0507496 1172.118084 820.8665951 1029.136367 1065.874915 1009.230723 1161.61952 976.325243 1083.019606 0.809332158 0.913234391 1.082268574 0.757942507 0.950247217 0.984169548 0.931867455 1.072574785 0.901484366 1 10.08084364 -1.000004686 0.834639846 0.913685433 49.76658121 0.20363607 0.087416372 809.9203757 2.282021544 0.015371926 75079.76256 0.099998921 1.000004686 48.85289577 GFGFVDFNS(ph)EEDAK ddPTM_HeLa_CUDC101_4h_R1 2 GFGFVDFNSEEDAK 14 0 P19338;H7BY16 P19338 NCL Nucleolin 1 0 GFGFVDFNS(1)EEDAK;GFGFVDFNS(1)EEDAK ; 233.4 2.43E-43 53409000 6744.5 5616.1 5103 5782 6624 6959.4 6058.9 6885 6267.3 6649.8 TRUE FALSE FALSE 5953.919934 5789.125384 5378.883616 6017.814952 6135.360717 6826.66104 6292.593803 7668.76057 6008.959241 6610.246694 0.900710701 0.875780535 0.813719043 0.910376758 0.928159114 1.032739224 0.95194538 1.16013228 0.909037063 1 12.6904884 -1.000003633 0.968716543 0.933167167 179.959385 0.60593781 0.057434371 926.5558799 1.39724273 0.010511609 367900.6139 0.099999163 1.000003633 179.0262178 TSSAFVGK(ac)TPEASPEPK ddPTM_HeLa_CUDC101_4h_R1 1 TSSAFVGKTPEASPEPK 17 1 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 1 TSSAFVGK(1)TPEASPEPK 193.96 1.34E-37 0 0 0 0 0 0 0 0 0 117.86 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 113.0017609 0 0 KQHYLS(ph)S(ph)EDEPDDNPDVLDSR ddPTM_HeLa_CUDC101_4h_R1 1 KQHYLSSEDEPDDNPDVLDSR 21 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 2 0 KQHY(0.629)LS(0.682)S(0.682)EDEPDDNPDVLDS(0.007)R 49.326 0.030644 16984000 2217 2238.8 2239.1 1972.1 2494.2 2289.1 2250.3 2407.6 2368.1 2385.7 TRUE FALSE FALSE 1957.126621 2307.774774 2360.152519 2052.530762 2310.207835 2245.439231 2337.094825 2681.671452 2270.485916 2371.50975 0.825266108 0.973124725 0.99521097 0.865495392 0.97415068 0.946839553 0.985488179 1.130786602 0.957401046 1 11.21159008 -1.000002988 0.838873639 0.924094934 69.1977684 0.50657294 0.054413439 444.4774393 1.227784793 0.011231371 57894.17376 0.099999312 1.000002988 68.27367346 QKIDDRDS(ph)DEEGASDR ddPTM_HeLa_CUDC101_4h_R1 2 QKIDDRDSDEEGASDR 16 2 Q8TDD1-2;Q8TDD1 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 QKIDDRDS(0.99)DEEGAS(0.01)DR;QKIDDRDS(1)DEEGASDR ; 77.469 0.016861 145258000 7578.4 7023.6 6627.1 7019.8 7499.6 6433 6986.1 8019.1 6953 5721.9 TRUE FALSE FALSE 6690.07144 7239.988791 6985.381072 7306.097786 6946.369449 6310.301243 7255.556217 8931.96193 6666.394397 5687.865884 1.176200631 1.272883176 1.228119863 1.284505988 1.221261118 1.109432144 1.27562013 1.570353822 1.172037902 1 12.47367173 -1.00000292 0.031731708 1.05E-07 3.041222447 0.379798231 0.11039218 578.3811371 1.420323767 42.60303554 107.5742289 0.099999328 1.00000292 3.041222341 TSSEDNLYLAVLR ddPTM_HeLa_CUDC101_4h_R1 1 TSSEDNLYLAVLR 13 0 Q15149-4 Q15149-4 PLEC Plectin 0 0 132.56 0.0056 2386200 1029.4 628 950.08 774.46 938.26 711.98 950.51 918.22 1155.5 782.89 FALSE FALSE TRUE 908.7352925 647.3479356 1001.444199 806.0458263 869.0464291 698.4001677 987.1714891 1022.746453 1107.869801 778.2333355 1.167690012 0.831817279 1.286817402 1.035737984 1.116691344 0.89741744 1.268477517 1.314189982 1.42357022 1 9.604058969 -4.613187352 8.584398209 1.067870309 1.30270952 0.169703029 0.166550934 0.186115878 15.38892368 0.016275728 0.06129262 2.44E-05 4.613187352 0.234839211 Y(ph)VKDDK ddPTM_HeLa_CUDC101_4h_R1 1 YVKDDK 6 1 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2;H7BXU7 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 0 Y(1)VKDDK 128.38 0.00019253 0 2161.8 1917.7 1976.7 1941.8 2117.4 1966.6 1911.8 2073.1 2099.6 1780.5 TRUE FALSE FALSE 1908.397081 1976.782064 2083.566381 2020.994997 1961.20362 1929.090382 1985.538766 2309.093324 2013.053599 1769.909507 1.078245568 1.116883127 1.177216334 1.141863462 1.108081296 1.089937296 1.121830669 1.304639201 1.137376567 1 10.78945988 -1.000002733 0.035729618 0.522986323 2.044023921 0.171686489 0.067354155 429.6495459 1.184883679 14.88080576 42.16650577 0.099999371 1.000002733 1.521037597 (ac)SEGES(ph)QTVLSSGSDPK ddPTM_HeLa_CUDC101_4h_R1 1 SEGESQTVLSSGSDPK 16 0 F8W6G1;Q9UHY1;C9JDW7;C9JHZ6 F8W6G1 NRBP1 Nuclear receptor-binding protein 1 0 S(0.488)EGES(0.5)QT(0.012)VLSSGSDPK 54.343 0.00075542 27195000 3937.4 3519 2905.1 2994.6 3600.3 3733.6 3260.8 3774 3839.3 3164.8 TRUE FALSE FALSE 3475.863941 3627.416219 3062.158493 3116.732732 3334.713042 3662.387801 3386.570148 4203.616905 3681.042429 3145.975629 1.104860416 1.153033795 0.973357348 0.990704665 1.059993285 1.164150087 1.076476918 1.336188643 1.170079766 1 11.61929178 -1.000002618 0.936270733 1.05096035 179.2866361 0.525699341 0.071472526 569.9175428 1.00556033 0.010306497 217481.6145 0.099999397 1.000002618 178.2356757 LDAQSLNLSQEDFDRY(ph)MSGQTSPR ddPTM_HeLa_CUDC101_4h_R1 1 LDAQSLNLSQEDFDRYMSGQTSPR 24 1 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3;A0A0A0MSJ3;Q3HKR1 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 0 LDAQSLNLS(0.001)QEDFDRY(0.268)MS(0.244)GQT(0.244)S(0.244)PR 51.234 0.024446 9087200 1002.1 1254 1258.5 1212 1453.4 1346.7 1372.5 1769.5 1738.6 1476.3 TRUE FALSE FALSE 884.6353571 1292.634254 1326.538317 1261.430599 1346.185578 1321.013941 1425.437785 1970.932727 1666.934172 1467.518902 0.602810196 0.880829713 0.903932696 0.859566849 0.917320776 0.900168263 0.971324991 1.343037371 1.135885998 1 10.51916337 -1.000002319 0.772719747 0.825356387 106.8497937 0.420245672 0.138557081 251.7685552 0.928083596 0.023881365 46632.68825 0.099999466 1.000002319 106.0244373 AGEPDGES(ph)LDEQPSSSSSKR ddPTM_HeLa_CUDC101_4h_R1 3 AGEPDGESLDEQPSSSSSKR 20 1 Q9H3Q1;J3KRZ9 Q9H3Q1 CDC42EP4 Cdc42 effector protein 4 1 0 AGEPDGES(1)LDEQPSSSSSKR;AGEPDGES(1)LDEQPSSSSSKR;AGEPDGES(1)LDEQPSSSSSKR ;; 137.23 5.33E-07 149033400 3925.3 3392.09 3278.96 3384.85 4127.88 3751.3 3605.45 4314.3 3781.06 2571.26 TRUE FALSE FALSE 3465.182284 3496.596272 3456.230496 3522.898814 3823.374516 3679.750203 3744.513414 4805.422473 3625.203106 2555.966031 1.355723136 1.368013592 1.352220825 1.378304238 1.495862805 1.439671012 1.465009068 1.880080727 1.418329924 1 11.31965295 -1.00000198 0.046240267 3.27E-09 3.895136758 0.416083389 0.154575048 153.5893262 0.543591442 11.56964156 44.28855598 0.099999544 1.00000198 3.895136755 LNQPGT(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 4 LNQPGTPTR 9 0 P36507;G5E9C7;M0R1B6 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 0 LNQPGT(0.906)PT(0.094)R;LNQPGT(0.997)PT(0.003)R;LNQPGT(0.728)PT(0.272)R;LNQPGT(0.972)PT(0.028)R ;;; 139.31 0.0094449 4587490000 15942.3 14358.7 16045.5 15764.7 16162.2 16060 15417.4 17132.5 13182.3 12233.5 TRUE FALSE FALSE 14073.56776 14801.07453 16912.96826 16407.65261 14969.94671 15753.68226 16012.05428 19082.79455 12638.92001 12160.7346 1.157295856 1.217120101 1.390785082 1.349232028 1.231006777 1.295454821 1.316701237 1.569213964 1.039322083 1 13.56994276 -1.000001814 0.051307133 0.347498065 2.986010582 0.753262651 0.079253029 142.5491789 0.557145859 6.720180747 29.69781773 0.099999582 1.000001814 2.638512517 QTPS(ph)PDVVLR ddPTM_HeLa_CUDC101_4h_R1 3 QTPSPDVVLR 10 0 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;Q9UPQ0;H0Y8P3;Q9UPQ0-2;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-5;Q9UPQ0-9;Q9UPQ0-4;D6RD46;D6RJ93;Q6NVB9;D6R8Y0;Q9UPQ0-7 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 QT(0.246)PS(0.754)PDVVLR;QT(0.015)PS(0.985)PDVVLR;QT(0.425)PS(0.575)PDVVLR ;; 131.32 0.0021378 495970000 9689.2 8410.2 9762.2 9554.3 11295 10317 10491.6 11360.8 10443 10448.8 TRUE FALSE FALSE 8553.446664 8669.308293 10289.97406 9943.965651 10461.79035 10120.22041 10896.26453 12654.06755 10012.53512 10386.65007 0.823503883 0.834658743 0.990692282 0.957379481 1.007234313 0.974348837 1.049064371 1.218301133 0.963981173 1 13.34244281 -1.000001535 0.564449176 0.915362428 15.93496584 0.688945637 0.058279188 68.07891334 0.544218879 0.014036729 1251.359525 0.099999647 1.000001535 15.01960341 RGSSPGS(ph)LEIPKDLPDILNK ddPTM_HeLa_CUDC101_4h_R1 1 RGSSPGSLEIPKDLPDILNK 20 2 A0A1B0GUI1;Q6GYQ0-3;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 RGS(0.286)S(0.286)PGS(0.427)LEIPKDLPDILNK 53.519 0.01836 8992300 6506.4 6479.5 6105 6291 8879.9 7394 7141.5 8455.2 6651.3 6563.5 TRUE FALSE FALSE 5743.729655 6679.125715 6435.054767 6547.574172 8224.847468 7252.971769 7416.950047 9417.705791 6377.130599 6524.46001 0.880337935 1.023705518 0.986296913 1.003542693 1.260617347 1.111658552 1.136791403 1.443446013 0.977418911 1 12.67164279 -1.000001186 0.356759623 0.941503575 6.637877404 0.738575559 0.079780217 20.99279729 0.261392004 0.024653309 82.01316036 0.099999727 1.000001186 5.696373829 KAVPMAPAPAS(ph)PGSSNDSSAR ddPTM_HeLa_CUDC101_4h_R1 3 KAVPMAPAPASPGSSNDSSAR 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 0 KAVPMAPAPAS(0.615)PGS(0.023)S(0.031)NDS(0.165)S(0.165)AR;KAVPMAPAPAS(0.644)PGS(0.065)S(0.097)NDS(0.097)S(0.097)AR;KAVPMAPAPAS(0.991)PGS(0.003)S(0.001)NDS(0.003)S(0.003)AR ;; 146 3.86E-07 78792300 8529.2 8765.1 9034.3 8269.6 10999.5 9754.2 9304.6 10335.5 9037.8 10819.5 TRUE FALSE FALSE 7529.420105 9035.142342 9522.721585 8606.870032 10188.0888 9568.154887 9663.481539 11512.05154 8665.258059 10755.14513 0.700076104 0.840076283 0.885410793 0.800256057 0.947275808 0.889635125 0.898498479 1.070376215 0.805684903 1 13.39273937 -1.000001103 0.836160784 0.855971611 68.23255923 0.408641302 0.077414408 678.7696763 1.903306206 0.017710788 86948.46254 0.099999746 1.000001103 67.37658762 NLEQILNGGES(ph)PKQK ddPTM_HeLa_CUDC101_4h_R1 2 NLEQILNGGESPKQK 15 1 Q13033-2;Q13033;G3V340 Q13033-2 STRN3 Striatin-3 1 0 NLEQILNGGES(1)PKQK;NLEQILNGGES(1)PKQK ; 77.391 0.01427 136726000 3714.8 3852.5 3665.4 3737.6 4853.9 3974.9 4127.1 4704 4172.5 4407.7 TRUE FALSE FALSE 3279.356775 3971.190959 3863.562611 3890.035483 4495.837467 3899.085405 4286.283629 5239.484346 4000.507784 4381.482804 0.74845821 0.906357764 0.881793398 0.887835387 1.026099535 0.88990088 0.978272384 1.195824468 0.913048838 1 12.09720348 -1.000000808 0.760694626 0.885204339 59.18980123 0.593399701 0.071295513 262.4873038 1.016949037 0.015987095 26284.74557 0.099999814 1.000000808 58.30459689 EFGYDSPHDLDS(ph)D ddPTM_HeLa_CUDC101_4h_R1 2 EFGYDSPHDLDSD 13 0 Q96CW6 Q96CW6 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS 1 0 EFGYDSPHDLDS(1)D;EFGYDSPHDLDS(1)D ; 120.57 0.0021617 20423200 8076.7 7218.2 5583.1 6140.2 8369.5 8849.1 7487.1 9400.9 7538.2 7894.6 TRUE FALSE FALSE 7129.961469 7440.584186 5884.939274 6390.623896 7752.098659 8680.318161 7775.879955 10471.06046 7227.472205 7847.642568 0.908548192 0.948129852 0.749898995 0.814336769 0.987825145 1.106105188 0.99085552 1.334293753 0.920973674 1 12.93804362 -1.000000805 0.856157098 0.933800886 146.2197829 0.662142861 0.088505325 357.8500576 0.916891855 0.015241312 101351.0571 0.099999815 1.000000805 145.285982 EDEKGDDVDDPENQNSALADTDASGGLT(ph)KESPDTNGPK ddPTM_HeLa_CUDC101_4h_R1 1 EDEKGDDVDDPENQNSALADTDASGGLTKESPDTNGPK 38 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 EDEKGDDVDDPENQNS(0.003)ALADT(0.152)DAS(0.152)GGLT(0.579)KES(0.108)PDT(0.005)NGPK 90.015 1.57E-11 17375000 2557.8 2594.7 2014.4 2017.2 2731.8 2716 2249.3 2689 2875 2432 TRUE FALSE FALSE 2257.978561 2674.639632 2123.304557 2099.470135 2530.280557 2664.196825 2336.056254 2995.104891 2756.491283 2417.534356 0.934000609 1.106350206 0.878293436 0.868434457 1.046636856 1.102030595 0.966297024 1.238908925 1.140207698 1 11.23932068 -1.000000573 0.854069127 0.971122219 91.0459611 0.295507834 0.095824578 454.0781458 1.173271587 0.012257597 79527.64574 0.099999868 1.000000573 90.07483888 AVFPS(ph)IVGRPR ddPTM_HeLa_CUDC101_4h_R1 2 AVFPSIVGRPR 11 1 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;P63267-2;C9JUM1;C9JZR7;C9JTX5;Q6S8J3;A5A3E0;P0CG38;F8WCH0;P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P60709;P63267;P63261 ACTB;ACTG2;POTEE;POTEF;POTEI;ACTA1;ACTC1;ACTA2;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, gamma-enteric smooth muscle;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 0 AVFPS(1)IVGRPR;AVFPS(1)IVGRPR ; 130.69 0.0010847 300640000 4535.2 3931.1 3917.4 3675.8 4248.1 4139.8 4087.7 3933.3 3596.7 3720.9 TRUE FALSE FALSE 4003.590731 4052.212531 4129.186493 3825.715012 3934.726126 4060.840212 4245.363958 4381.050973 3448.442504 3698.767921 1.082411986 1.09555739 1.116368094 1.034321453 1.063793731 1.097889973 1.147777868 1.18446225 0.932321945 1 11.85282907 -1.000000512 0.014696367 8.23E-11 2.399142568 0.66360302 0.040079189 2477.995314 2.840837734 186.7416455 287.2611508 0.099999882 1.000000512 2.399142568 GPSTPKSPGAS(ph)NFSTLPK ddPTM_HeLa_CUDC101_4h_R1 1 GPSTPKSPGASNFSTLPK 18 1 Q9Y4E8 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 0 GPSTPKS(0.273)PGAS(0.432)NFS(0.222)T(0.073)LPK 64.761 0.016794 42463000 1780.5 2631.4 2236.2 2139.6 3050.4 2425 2721.6 3458.1 2072.6 2889.7 TRUE FALSE FALSE 1571.792489 2712.470315 2357.095736 2226.862136 2825.378069 2378.747165 2826.573024 3851.756126 1987.166551 2872.511936 0.547183971 0.944285133 0.820569519 0.775231639 0.983591411 0.828106973 0.984007408 1.340901696 0.691787047 1 11.48809717 -1.000000457 0.760804005 0.800392892 104.1875402 0.602644327 0.128347204 260.5178615 1.008297421 0.028099139 46266.78093 0.099999895 1.000000457 103.3871473 KMLGEDS(ph)DEEEEMDTSER ddPTM_HeLa_CUDC101_4h_R1 4 KMLGEDSDEEEEMDTSER 18 1 A0A087X0M4;Q9BWU0;A0A087WWF4;H7C256 A0A087X0M4 SLC4A1AP Kanadaptin 1 0 KMLGEDS(0.998)DEEEEMDT(0.002)S(0.001)ER;KMLGEDS(1)DEEEEMDTSER;KMLGEDS(0.993)DEEEEMDT(0.007)S(0.001)ER;KMLGEDS(0.999)DEEEEMDTSER ;;; 148.69 3.72E-05 312572000 8288.5 7526.8 6429.7 6974.8 8609.7 7845.6 7492.9 8319.9 8134.4 7646.5 TRUE FALSE FALSE 7316.934595 7758.691787 6777.309031 7259.262492 7974.579584 7695.958252 7781.903663 9267.003786 7799.096589 7601.018278 0.962625576 1.020743735 0.891631724 0.955038158 1.049146219 1.012490428 1.02379752 1.219179253 1.026059444 1 12.89197699 -1.00000038 0.947015256 0.979458307 165.7483976 0.722933426 0.042393595 432.2455945 0.72815574 0.006114297 154294.3 0.099999913 1.00000038 164.7689393 (ac)S(ph)SSPVNVKK ddPTM_HeLa_CUDC101_4h_R1 1 SSSPVNVKK 9 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1X7SBS1 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 0 S(0.333)S(0.333)S(0.333)PVNVKK 44.447 0.035453 19354000000 22363 20549 21508 19806 21563 19495 20553 21474 21239 18751 TRUE FALSE FALSE 19741.64304 21182.09033 22670.78754 20613.77429 19972.34045 19123.16536 21345.73609 23918.51336 20363.51943 18639.46822 1.059131237 1.136410658 1.216278666 1.105920729 1.071508061 1.025950158 1.145190187 1.283218656 1.092494657 1 14.18607308 -1.000000354 0.023792145 0.250083852 2.254153797 0.177829947 0.074032144 1455.054378 2.690882647 79.77885885 160.0170248 0.099999919 1.000000354 2.004069946 QEAGKEGTAPS(ph)ENGETK ddPTM_HeLa_CUDC101_4h_R1 1 QEAGKEGTAPSENGETK 17 1 Q15651;A0A087WZE9 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 0 QEAGKEGT(0.001)APS(0.932)ENGET(0.068)K 59.537 0.029153 11084000 2801.8 3253.3 3280.3 3144 3109.9 2882.3 3329.6 4048 3138.5 2960.1 TRUE FALSE FALSE 2473.377251 3353.530317 3457.64294 3272.22591 2880.488873 2827.32493 3458.023787 4508.807957 3009.129702 2942.493194 0.840571953 1.139690085 1.175072536 1.112058956 0.978927965 0.960860313 1.175201966 1.532308713 1.022646274 1 11.52282336 -1.000000281 0.825530055 0.967554136 172.2871451 0.631393175 0.108064862 269.8389292 0.792437243 0.020555865 86702.2142 0.099999935 1.000000281 171.319591 PPS(ph)MHVDDFVAAESK ddPTM_HeLa_CUDC101_4h_R1 2 PPSMHVDDFVAAESK 15 0 Q69YN4-3;Q69YN4 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 PPS(1)MHVDDFVAAESK;PPS(1)MHVDDFVAAESK ; 72.089 0.022728 88300000 7090.1 6156.8 5862.4 5402.7 7008 6871.1 5989.5 6257.5 6591.5 6172 TRUE FALSE FALSE 6259.009226 6346.48371 6179.339077 5623.045458 6491.033802 6740.045216 6220.517021 6969.828506 6319.79558 6135.28867 1.020165401 1.034423 1.007179843 0.916508703 1.057983438 1.098570186 1.013891498 1.136022913 1.030073061 1 12.58291551 -1.000000279 0.585899091 1.007600924 7.686381899 0.399325516 0.043416075 108.1805932 0.807802547 0.007501185 924.0385757 0.099999936 1.000000279 6.678780975 GAPSS(ph)PATGVLPS(ph)PQGK ddPTM_HeLa_CUDC101_4h_R1 1 GAPSSPATGVLPSPQGK 17 0 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 2 0 GAPS(0.048)S(0.949)PAT(0.003)GVLPS(1)PQGK 146.28 0.0014914 20931000 5453.5 4256.5 4523.5 4230.5 5371.4 5132.3 4741.1 2943.6 5041.6 5307.8 TRUE FALSE FALSE 4814.248997 4387.63772 4768.054093 4403.038076 4975.162523 5034.409928 4923.965815 3278.687526 4833.783114 5276.22897 0.912441258 0.83158592 0.90368597 0.834504738 0.942939086 0.954168206 0.93323581 0.621407362 0.916143545 1 12.36529146 -1.000000277 0.030783353 1.4982529 1.56E-09 0.201213115 0.089664383 1081.218602 2.577333863 39.81365227 97.81066275 0.099999936 1.000000277 -1.498252898 VAVPTGPTPLDST(ph)PPGGAPHPLTGQEEAR ddPTM_HeLa_CUDC101_4h_R1 2 VAVPTGPTPLDSTPPGGAPHPLTGQEEAR 29 0 A0A0A0MR08;E7ESU0;O94966-2;O94966-4;O94966-3;O94966;O94966-7;O94966-6;O94966-5 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 19 1 0 VAVPTGPTPLDS(0.045)T(0.955)PPGGAPHPLTGQEEAR;VAVPT(0.002)GPT(0.002)PLDS(0.267)T(0.728)PPGGAPHPLTGQEEAR ; 142.79 6.15E-16 50037000 6194 4866.7 4598.7 4810.5 5750.2 5144.9 4591.1 4097.6 6002.9 5736.5 TRUE FALSE FALSE 5467.948709 5016.637259 4847.319632 5006.692983 5326.019202 5046.769604 4768.180265 4564.054221 5755.457921 5702.379043 0.95888903 0.879744616 0.850052162 0.878000734 0.933999505 0.885028787 0.836173855 0.800377209 1.009308199 1 12.47734822 -1.000000223 0.085513784 1.114090904 0.297631453 0.762591992 0.03235108 60.49697566 0.377545808 0.51580639 5.837281909 0.099999949 1.000000223 -0.816459451 LIDLES(ph)PTPESQK ddPTM_HeLa_CUDC101_4h_R1 2 LIDLESPTPESQK 13 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 LIDLES(0.509)PT(0.491)PESQK;LIDLES(0.768)PT(0.23)PES(0.001)QK ; 259.68 7.88E-70 574500000 18368.6 16537.9 15322.9 16302.3 17721.6 16514.3 17404.9 17605.8 17044.9 15941.7 TRUE FALSE FALSE 16215.46055 17047.4131 16151.30232 16967.17826 16414.31287 16199.31724 18076.21282 19609.97311 16342.30201 15846.87806 1.023258997 1.075758457 1.019210362 1.070695325 1.035807357 1.022240291 1.140679745 1.237466019 1.031263189 1 13.95191103 -1.000000207 0.640054526 1.017667754 20.06617529 0.832733878 0.028186782 51.41154107 0.31892896 0.005014323 1387.548112 0.099999952 1.000000207 19.04850753 QTAEETGLT(ph)PLETSR ddPTM_HeLa_CUDC101_4h_R1 2 QTAEETGLTPLETSR 15 0 Q5T8C6;Q13042-4;Q13042-3;Q13042-2;Q13042 Q5T8C6 CDC16 Cell division cycle protein 16 homolog 1 0 QTAEETGLT(0.999)PLET(0.001)SR;QTAEET(0.114)GLT(0.885)PLETSR ; 182.91 5.46E-10 19737800 4339.9 4001.4 3683.6 3340.5 3907.4 4404.5 3617.4 4148.6 3950.6 3657.6 TRUE FALSE FALSE 3831.183501 4124.678391 3882.746558 3476.740029 3619.158887 4320.491501 3756.92433 4620.859855 3787.754596 3635.844433 1.053725915 1.134448535 1.067907781 0.956240041 0.99541082 1.18830483 1.033301727 1.270917923 1.04178126 1 11.82807476 -1.000000207 0.839138301 1.033550486 73.85837819 0.480046064 0.066150079 385.0575925 1.06242511 0.010372094 53516.13983 0.099999952 1.000000207 72.82482771 HIKEEPLSEEEPCT(ph)STAIASPEKK ddPTM_HeLa_CUDC101_4h_R1 1 HIKEEPLSEEEPCTSTAIASPEKK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 HIKEEPLSEEEPCT(0.422)S(0.422)T(0.078)AIAS(0.078)PEKK 58.366 0.0070803 15349000 924.56 1068 1058.8 1175.5 811.62 1219.9 1232.8 1559.1 1124.3 1024.7 TRUE FALSE FALSE 816.1844783 1100.903814 1116.041931 1223.441971 751.7484096 1196.63244 1280.349509 1736.581642 1077.955878 1018.605039 0.801276694 1.080795571 1.095657186 1.201095542 0.738017564 1.174775693 1.256963651 1.704862607 1.058266784 1 9.992379044 -1.000000184 0.639352941 0.933738097 65.46736472 0.66752105 0.145581874 77.24887499 0.480491201 0.025762403 7054.366832 0.099999958 1.000000184 64.53362662 S(ph)PGSTPTT(ph)PTSSQAPQK ddPTM_HeLa_CUDC101_4h_R1 1 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658;P35658-5;P35658-4;P35658-3 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 2 0 S(0.537)PGS(0.24)T(0.223)PT(0.078)T(0.398)PT(0.473)S(0.043)S(0.009)QAPQK 146.2 0.00057503 98283000 3657.8 3044.9 2875.4 3112 2984.8 2869.5 3397 2986 3092.5 3007.5 TRUE FALSE FALSE 3229.038229 3138.70976 3030.852822 3238.920811 2764.617251 2814.769068 3528.023428 3325.91417 2965.025841 2989.611256 1.080086323 1.049872204 1.013794959 1.083391964 0.924741384 0.941516748 1.180094375 1.112490516 0.991776384 1 11.54574219 -1.000000179 0.005452612 2.03E-08 2.169423814 0.077087225 0.071900486 115676.7196 49.29540192 9051.412003 10621.29025 0.099999959 1.000000179 2.169423794 (ac)S(ph)GEDEQQEQTIAEDLVVTK ddPTM_HeLa_CUDC101_4h_R1 11 SGEDEQQEQTIAEDLVVTK 19 0 Q9UQ80;F8VR77 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 1 0 S(0.999)GEDEQQEQT(0.001)IAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(0.997)GEDEQQEQT(0.003)IAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK ;;;;;;;;;; 182.02 4.49E-104 727309300 41492.19 38934.24 35604.48 33869.18 42428.75 38826.824 36875.94 36417.89 39834 37937.06 TRUE FALSE FALSE 36628.53839 40133.75779 37529.36589 35250.51156 39298.86564 38086.26702 38298.25736 40563.55539 38192.02566 37711.40868 0.97128534 1.064233854 0.99517274 0.934743962 1.042094873 1.009940184 1.015561569 1.075630872 1.012744604 1 15.20271342 -1.000000175 0.617514698 0.99101797 6.766849634 0.248461276 0.034408471 146.8283631 0.986159353 0.005828761 1153.07209 0.09999996 1.000000175 5.775831663 S(ph)TELVLSPDMPR ddPTM_HeLa_CUDC101_4h_R1 3 STELVLSPDMPR 12 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 0 S(0.98)T(0.02)ELVLSPDMPR;S(0.994)T(0.006)ELVLSPDMPR;S(0.991)T(0.009)ELVLSPDMPR ;; 266.78 3.47E-70 136004000 2888.45 2539.9 2079.2 2439.47 2732.42 2304.37 2272.87 2005.92 2275.43 2748.47 TRUE FALSE FALSE 2549.87027 2618.151308 2191.607841 2538.962131 2530.85482 2260.417982 2360.535357 2234.265825 2181.635812 2732.121978 0.933292983 0.958284926 0.802163248 0.929300431 0.926333026 0.827348852 0.8639934 0.817776747 0.798513328 1 11.41580618 -1.000000148 0.064683612 1.166172359 0.309818119 0 0.076223475 120.9359776 0.587256305 1.500275408 9.638119741 0.099999966 1.000000148 -0.856354241 S(ph)PQGQLDTSESKPDSFFLEPLMPAVLKPAK ddPTM_HeLa_CUDC101_4h_R1 1 SPQGQLDTSESKPDSFFLEPLMPAVLKPAK 30 2 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 S(0.71)PQGQLDT(0.089)S(0.089)ES(0.089)KPDS(0.023)FFLEPLMPAVLKPAK 45.942 0.024937 26831000 2198.1 1865.1 1751.7 1975.6 2303.5 1829.6 1737.8 1519.4 1920.8 2124.2 TRUE FALSE FALSE 1940.44205 1922.56152 1846.402201 2056.173507 2133.575394 1794.703428 1804.827528 1692.362354 1841.623811 2111.565164 0.918959113 0.91049121 0.8744235 0.973767489 1.010423657 0.849939874 0.854734469 0.801472947 0.872160539 1 11.04409705 -1.000000145 0.245779929 0.974010114 8.70E-11 0.270908181 0.056223066 32.76427928 0.406968291 0.030137619 13.27217537 0.099999967 1.000000145 -0.974010114 TSSTCS(ph)NESLSVGGTSVTPR ddPTM_HeLa_CUDC101_4h_R1 2 TSSTCSNESLSVGGTSVTPR 20 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 0 T(0.038)S(0.028)S(0.021)T(0.251)CS(0.65)NES(0.012)LS(0.001)VGGTSVTPR;TSSTCS(0.994)NES(0.006)LSVGGTSVTPR ; 170.22 8.22E-08 55318000 3601.65 2929.83 2854.95 2931.43 3690.45 2661.44 2467.81 3934.73 4321.1 2756.73 TRUE FALSE FALSE 3179.470047 3020.09459 3009.297233 3050.986386 3418.212856 2610.677466 2562.994258 4382.643758 4142.982429 2740.332847 1.160249584 1.102090424 1.098150261 1.113363433 1.247371413 0.952686265 0.935285749 1.599310742 1.511853727 1 11.42013542 -1.00000014 0.016997092 3.37E-08 2.525799214 0 0.227654631 6998.308504 9.271931587 536.2546937 882.2915844 0.099999968 1.00000014 2.525799181 GGGGGQDNGLEGLGNDS(ph)R ddPTM_HeLa_CUDC101_4h_R1 4 GGGGGQDNGLEGLGNDSR 18 0 P08621;P08621-2;P08621-4 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 0 GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R ;;; 256.66 2.57E-70 200757000 10623.67 8650.5 8313.6 8814.14 9465.03 12573.8 13874.6 9069.12 8347.98 7127.13 TRUE FALSE FALSE 9378.379507 8917.011652 8763.058363 9173.618727 8766.813594 12333.97571 14409.74797 10101.51196 8003.872731 7084.737514 1.323744103 1.258622727 1.236892453 1.294842428 1.237422498 1.740922044 2.033914163 1.425813157 1.129734548 1 12.79049869 -1.000000126 0.14950968 0.945492062 4.037659402 0.534041159 0.196843581 36.9493647 0.357611898 0.443239038 24.86795617 0.099999971 1.000000126 3.09216734 MLQFPHIS(ph)QCEELR ddPTM_HeLa_CUDC101_4h_R1 1 MLQFPHISQCEELR 14 0 D6RC88;D6R9V4;D6RDA3;D6RHC7 D6RC88 GRK6 1 0 MLQFPHIS(1)QCEELR 82.029 0.023123 14514000 1039.1 933.35 1117.6 1050.1 1193.3 1172.9 839.04 631.99 1062 1170.5 TRUE FALSE FALSE 917.2982732 962.1054072 1178.020837 1092.927617 1105.272636 1150.528887 871.4020539 703.933187 1018.22391 1163.537814 0.788369971 0.826879364 1.012447402 0.939314222 0.949924122 0.988819506 0.748924567 0.60499382 0.875110287 1 10.18430238 -1.00000012 0.026176823 1.486825015 2.96E-07 0.151202013 0.115003177 2670.603386 5.427336054 104.7407786 225.1631212 0.099999972 1.00000012 -1.486824719 TSTTAEKTDEEEKEDR ddPTM_HeLa_CUDC101_4h_R1 3 TSTTAEKTDEEEKEDR 16 2 I3L0H8;Q9NUU7;H3BTB3 I3L0H8 DDX19A ATP-dependent RNA helicase DDX19A 0 0 ;; ;; 75.911 0.010826 26590800 7901 7249.4 8406.9 7443 8201 7376.4 6934.7 7538.5 7946.6 7692.7 FALSE FALSE TRUE 6974.856757 7472.745421 8861.402443 7746.557711 7596.028569 7235.70746 7202.173702 8396.652368 7619.037785 7646.943478 0.912110411 0.97721991 1.15881626 1.013026673 0.993341796 0.946222171 0.941836921 1.098040334 0.996350739 1 12.9006675 -6.986235655 24.99916973 0.9577686 1.02017983 0.129963267 0.065587998 342.0196245 621182.717 0.011241421 0.014770512 1.03E-07 6.986235655 0.062411231 GFAFVTFES(ph)PADAK ddPTM_HeLa_CUDC101_4h_R1 1 GFAFVTFESPADAK 14 0 P38159;H0Y6E7;H3BT71;H3BR27;P38159-3;Q8N7X1;Q96E39;A0A1B0GUK8;O75526 P38159;Q96E39;O75526 RBMX;RBMXL3;RBMXL1;RBMXL2 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-3;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2" 1 0 GFAFVT(0.009)FES(0.991)PADAK 137.81 0.00059389 43143000 4381.8 4044.4 3887.3 3626.3 3971.1 4376.5 3610.7 2874.1 4183.7 4406 TRUE FALSE FALSE 3868.172046 4169.00317 4097.459196 3774.196188 3678.159865 4293.025554 3749.965909 3201.275926 4011.246115 4379.792916 0.883186059 0.951872212 0.935537199 0.86172937 0.839802232 0.980189163 0.856197081 0.730919472 0.915852916 1 12.09664694 -1.000000069 0.0267553 1.531683672 1.13E-07 0.341825887 0.060880196 1108.118911 2.301136145 44.37893879 97.01489392 0.099999984 1.000000069 -1.531683559 AAKPGPAEAPSPT(ph)ASPS(ph)GDASPPATAPYDPR ddPTM_HeLa_CUDC101_4h_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 0 AAKPGPAEAPS(0.196)PT(0.848)AS(0.354)PS(0.547)GDAS(0.051)PPAT(0.004)APYDPR 89.08 2.61E-07 79105000 1455.6 1420.3 1236.5 1091.6 1525.2 1160.6 1457.7 1588.6 1606 1112.2 TRUE FALSE FALSE 1284.976775 1464.05776 1303.34893 1136.120166 1412.689035 1138.463489 1513.923977 1769.439803 1539.8 1105.584585 1.162260032 1.324238579 1.178877625 1.027619399 1.277775626 1.029738931 1.369342516 1.60045629 1.392747349 1 10.11059369 -1.000000062 0.726692683 1.102584691 79.77306078 0.375851481 0.144614752 154.4413448 0.687832179 0.019870862 19849.07473 0.099999986 1.000000062 78.67047609 TSVLFSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TSVLFSKK 8 1 A0A5F9ZH11;P55201-3;P55201;P55201-2 A0A5F9ZH11 BRPF1 Peregrin 0 1 ; TSVLFSK(1)K;TSVLFSK(1)K 144.09 0.0020229 5388000 9126.6 2547.3 838.96 5916.2 4270.1 5906.3 4143.1 2364.5 259 39.477 FALSE TRUE FALSE 8056.793783 2625.779294 884.3167153 6157.488208 3955.10323 5793.647168 4302.900755 2633.665122 248.3239104 39.24218905 205.3094891 66.91215137 22.53484672 156.9099063 100.7870184 147.6382258 109.6498656 67.11310419 6.327983132 1 5.294333617 -9.640517121 1.47968476 1.226469559 122.510445 0.394081969 50.50853165 0.341248836 1.346967086 40.29412299 9.215959259 2.29E-10 9.640517121 121.2839755 TSVLFSK(ac)K(ac)NPK ddPTM_HeLa_CUDC101_4h_R1 2 TSVLFSKKNPK 11 2 A0A5F9ZH11;P55201-3;P55201;P55201-2 A0A5F9ZH11 BRPF1 Peregrin 0 2 ; TSVLFSK(1)K(1)NPK;TSVLFSK(1)K(1)NPK 142.07 0.00033127 1006210 0 0 207.001 354.13 477.7 680.22 802.79 711.99 146.08 0 FALSE TRUE FALSE 0 0 218.1921002 368.5729521 442.4610227 667.2459368 833.7538792 793.0400636 140.0585206 0 0 DASSS(ph)PASTASSASSTSLK ddPTM_HeLa_CUDC101_4h_R1 4 DASSSPASTASSASSTSLK 19 0 A0A669KBK8;Q04724 A0A669KBK8 TLE1 Transducin-like enhancer protein 1 1 0 DAS(0.002)S(0.021)S(0.741)PAS(0.224)T(0.009)AS(0.003)SASSTSLK;DAS(0.008)S(0.038)S(0.954)PAS(0.001)TASSASSTSLK;DASS(0.021)S(0.979)PASTASSASSTSLK;DAS(0.001)S(0.072)S(0.927)PASTASSASSTSLK ;;; 317.83 4.60E-146 103853500 13959.3 11919.9 11477.5 11681.5 13825 11243.4 10558.7 10617.1 14410.8 13147.6 TRUE FALSE FALSE 12323.01201 12287.13799 12098.00837 12157.92206 12805.15729 11028.95088 10965.9526 11825.70775 13816.78072 13069.39749 0.942890598 0.940145711 0.925674529 0.930258803 0.979781761 0.843876 0.83905571 0.90483955 1.057185745 1 13.67390501 -1.000000052 0.102361136 1.04630155 0.50141558 0.616010055 0.03907244 59.01676002 0.429046196 0.257955081 4.541615207 0.099999988 1.000000052 -0.54488597 IS(ph)PIQKPQGLDPVEILQER ddPTM_HeLa_CUDC101_4h_R1 1 ISPIQKPQGLDPVEILQER 19 1 P51531;P51531-2;F6VDE0;A0A0U1RQZ9;A0A0U1RRJ8 P51531 SMARCA2 Probable global transcription activator SNF2L2 1 0 IS(1)PIQKPQGLDPVEILQER 95.873 0.0012478 119480000 2246.4 1773.3 1453.7 1926.3 1942.2 2029.5 1583.5 1402.1 1633.5 2135.3 TRUE FALSE FALSE 1983.080397 1827.933271 1532.291419 2004.86284 1798.927775 1990.790669 1644.576125 1561.709397 1566.166439 2122.599141 0.934269858 0.861176864 0.721893922 0.944532014 0.84751178 0.937902325 0.774793551 0.735753335 0.737853139 1 11.05161622 -1.000000048 0.054054967 1.298722374 0.044371068 0 0.110152383 231.6873627 0.951402593 4.973910743 23.75121146 0.099999989 1.000000048 -1.254351307 TTQPSINES(ph)ESDPFEVVRDDFK ddPTM_HeLa_CUDC101_4h_R1 2 TTQPSINESESDPFEVVRDDFK 22 1 Q76FK4-2;Q76FK4-4;Q76FK4;F8WE42;F5H101;F5GWN9 Q76FK4-2 NOL8 Nucleolar protein 8 1 0 TTQPS(0.008)INES(0.623)ES(0.369)DPFEVVRDDFK;T(0.002)T(0.001)QPS(0.11)INES(0.444)ES(0.444)DPFEVVRDDFK ; 57.688 0.0097552 15315600 5419.2 5044.8 3755.4 4452.9 5624.5 4984.6 4634.6 5121.3 4332.9 4589.5 TRUE FALSE FALSE 4783.969591 5200.224308 3958.428283 4634.508509 5209.591841 4889.52706 4813.358074 5704.288091 4154.296028 4562.20145 1.048609897 1.139849778 0.867657495 1.01584916 1.14190307 1.071747294 1.05505163 1.250336741 0.910590221 1 12.15551444 -1.000000048 0.726238011 1.02495531 32.43865795 0.411171139 0.081752423 226.3553041 1.010308218 0.011734009 11608.46487 0.099999989 1.000000048 31.41370264 GKIEVLDSPAS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 GKIEVLDSPASK 12 1 Q8N5I9 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 0 GKIEVLDS(0.335)PAS(0.665)K 113.53 0.024327 40197000 2729.2 2275.5 2523.3 1782.6 2656.5 2305.4 2254.7 1633.9 2347 2696.4 TRUE FALSE FALSE 2409.287313 2345.605458 2659.717231 1855.302133 2460.535287 2261.428336 2341.664534 1819.896572 2250.255667 2680.361693 0.898866492 0.875107813 0.992297882 0.692183498 0.91798629 0.843702677 0.873637517 0.678974251 0.839534333 1 11.38821198 -1.000000045 0.075016098 1.152459791 0.159808251 0.165819114 0.093138686 133.8117423 0.743670325 1.635802312 13.95311786 0.09999999 1.000000045 -0.99265154 AAGISLIVPGKSPT(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 AAGISLIVPGKSPTR 15 1 F2Z357;J3KPC5;P47736;P47736-3;P47736-4 F2Z357 RAP1GAP Rap1 GTPase-activating protein 1 1 0 AAGISLIVPGKS(0.332)PT(0.668)R;AAGISLIVPGKS(0.361)PT(0.639)R ; 127.49 0.00087169 131487000 6502.8 5847.4 5730.6 5707.9 6613.4 5082.4 5670.7 4358.2 5850.3 6586.9 TRUE FALSE FALSE 5740.551642 6027.551463 6040.41357 5940.692834 6125.542658 4985.461688 5889.420799 4854.319872 5609.148158 6547.720826 0.876725168 0.920557187 0.922521551 0.907291711 0.935522882 0.761404131 0.899461195 0.741375511 0.856656584 1 12.6767771 -1.000000036 0.03389968 1.423547102 0.060035049 0.209190886 0.066458267 559.8517503 1.466718248 17.88102937 48.06566497 0.099999992 1.000000036 -1.363512053 KT(ph)SDANETEDHLESLICK ddPTM_HeLa_CUDC101_4h_R1 1 KTSDANETEDHLESLICK 18 1 F2Z2T1;Q09161 F2Z2T1 NCBP1 Nuclear cap-binding protein subunit 1 1 0 KT(0.439)S(0.439)DANET(0.122)EDHLESLICK 70.784 0.014685 53522000 5056 4514.2 4822.5 5177.2 7730.6 8204.8 9595.9 10413 5506.3 3183.5 TRUE FALSE FALSE 4463.343344 4653.277151 5083.218937 5388.348594 7160.32904 8048.30711 9966.017077 11598.37383 5279.327983 3164.5644 1.410413182 1.470432124 1.606293409 1.702714153 2.262658658 2.543259069 3.149253994 3.665077515 1.668263721 1 11.62779121 -1.000000031 0.270620461 1.027342343 21.31610635 0.935447496 0.203511264 3.287385729 0.041704542 0.044405627 31.5845602 0.099999993 1.000000031 20.288764 up GGSDGT(ph)PRGS(ph)PSPASVSSGR ddPTM_HeLa_CUDC101_4h_R1 2 GGSDGTPRGSPSPASVSSGR 20 1 Q96II5;P10398 Q96II5 ARAF Serine/threonine-protein kinase A-Raf 2 0 GGS(0.009)DGT(0.983)PRGS(0.832)PS(0.121)PAS(0.041)VS(0.01)S(0.003)GR;GGS(0.022)DGT(0.979)PRGS(0.618)PS(0.155)PAS(0.217)VS(0.007)S(0.002)GR ; 123 0.00019902 16225600 3455.2 2879.6 2907.2 2531.1 3314 2367.7 2764.8 2148.38 3116.8 3405.7 TRUE FALSE FALSE 3050.186694 2968.317063 3064.372026 2634.329198 3069.532822 2322.540067 2871.439262 2392.942895 2988.324185 3385.442745 0.900971283 0.87678844 0.90516138 0.778134323 0.906685788 0.68603732 0.848172448 0.706833072 0.88269819 1 11.72512881 -1.00000003 0.08908234 1.134352371 0.017301558 0.472136456 0.067252149 55.34185936 0.357830357 0.6104265 7.595256294 0.099999993 1.00000003 -1.117050813 TPVDES(ph)DDEIQHDEIPTGK ddPTM_HeLa_CUDC101_4h_R1 4 TPVDESDDEIQHDEIPTGK 19 0 Q86TC9;A0A087WX60;Q86TC9-2 Q86TC9 MYPN Myopalladin 1 0 T(0.167)PVDES(0.832)DDEIQHDEIPTGK;T(0.005)PVDES(0.995)DDEIQHDEIPTGK;T(0.004)PVDES(0.996)DDEIQHDEIPTGK;T(0.051)PVDES(0.949)DDEIQHDEIPTGK ;;; 120.33 3.67E-05 319518000 14754.6 13687.9 13049.6 12289 14221.5 14810.8 13140.2 14732.5 14830.8 13206.3 TRUE FALSE FALSE 13025.08815 14109.60797 13755.10085 12790.19854 13172.40828 14528.30867 13647.02192 16409.58825 14219.46815 13127.74834 0.992179909 1.074792692 1.04778828 0.974287304 1.00340195 1.106687018 1.039555418 1.249992598 1.083161238 1 13.68033187 -1.000000026 0.770286199 1.004969562 48.62243183 0.627993832 0.046558169 142.4884524 0.530662456 0.006239246 11812.47642 0.099999994 1.000000026 47.61746227 AVDS(ph)LVPIGR ddPTM_HeLa_CUDC101_4h_R1 1 AVDSLVPIGR 10 0 P25705;P25705-2;P25705-3;K7ERX7;K7EK77;K7ENJ4 P25705 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 1 0 AVDS(1)LVPIGR 105.13 0.010682 7074400 4427.7 3777.5 3466.6 3258.1 4566.9 3649.8 3196.3 3236.1 3654 4150.7 TRUE FALSE FALSE 3908.691718 3893.880298 3654.014882 3390.979401 4230.008886 3580.186146 3319.582362 3604.484543 3503.380573 4126.011452 0.947329343 0.943739576 0.885604639 0.821854093 1.025205319 0.867711151 0.804549963 0.873600228 0.849096183 1 12.01053211 -1.000000019 0.085809412 1.090978618 0.401500575 0 0.072721632 104.5775288 0.654605224 0.749483567 8.548873435 0.099999996 1.000000019 -0.689478043 KYGGSVGSQPPPVAPEPGPVPS(ph)SPSQEPPTKR ddPTM_HeLa_CUDC101_4h_R1 1 KYGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR 32 2 E9PS08;A0A087WTZ5;E9PJ81;E9PRQ7;Q04323;Q04323-2 E9PS08 UBXN1 UBX domain-containing protein 1 1 0 KYGGSVGSQPPPVAPEPGPVPS(0.463)S(0.463)PS(0.056)QEPPT(0.017)KR 91.432 8.15E-09 66574000 5453.3 4780.7 5282.9 5412.3 6476.9 5888.9 5611.9 6441.6 5323.9 6059 TRUE FALSE FALSE 4814.072441 4927.9877 5568.509554 5633.036988 5999.111991 5776.579044 5828.352863 7174.885706 5104.446589 6022.960799 0.799286697 0.818200195 0.92454687 0.935260444 0.996040351 0.959092917 0.967688992 1.191255588 0.847497893 1 12.55625715 -1.000000013 0.697905737 0.902047355 35.03460606 0.654314476 0.062859378 172.4506957 0.861365718 0.014076839 9195.053754 0.099999997 1.000000013 34.13255871 TVEDEDQDS(ph)EEEKDNDSYIKER ddPTM_HeLa_CUDC101_4h_R1 2 TVEDEDQDSEEEKDNDSYIKER 22 2 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 0 TVEDEDQDS(0.984)EEEKDNDS(0.008)Y(0.007)IKER;TVEDEDQDS(0.976)EEEKDNDS(0.006)Y(0.018)IKER ; 60.388 0.0057304 84030000 7733.6 8106.3 8195.8 8773.7 10900 9455.6 8351.7 11511.4 9669.3 6373.7 TRUE FALSE FALSE 6827.079131 8356.045495 8638.889739 9131.529409 10095.92872 9275.250184 8673.827867 12821.81125 9270.727361 6335.788949 1.077542069 1.318864243 1.363506551 1.441261614 1.593476171 1.463945573 1.36902096 2.023711861 1.46323172 1 12.62930856 -1.000000013 0.158147232 0.86334745 4.510768379 0.383864112 0.208827434 21.31833549 0.214089659 0.264690761 18.14602522 0.099999997 1.000000013 3.647420929 ERDHS(ph)PTPSVFNSDEERYR ddPTM_HeLa_CUDC101_4h_R1 1 ERDHSPTPSVFNSDEERYR 19 2 Q6UN15;Q6UN15-5;Q6UN15-3 Q6UN15 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 0 ERDHS(0.559)PT(0.434)PS(0.007)VFNSDEERYR 62.203 0.011826 43874000 777.99 619.36 958.53 727.9 1144.4 1079.4 1216.2 1145 1077.3 437.81 TRUE FALSE FALSE 686.7951916 638.4417475 1010.351031 757.5869083 1059.979892 1058.812243 1263.109241 1275.342172 1032.893238 435.2058866 1.578092605 1.466987849 2.321547254 1.740755195 2.435582616 2.432899636 2.902325727 2.930434102 2.373343904 1 8.765554261 -1.000000011 0.139589696 0.648488757 9.28801481 0.394896149 0.472491673 13.31767886 0.12293221 0.519160665 23.03750045 0.099999998 1.000000011 8.639526052 DVESPS(ph)WR ddPTM_HeLa_CUDC101_4h_R1 1 DVESPSWR 8 0 F5H6E2;O00159-2;O00159-3;O00159 F5H6E2 MYO1C Unconventional myosin-Ic 1 0 DVES(0.004)PS(0.996)WR 96.665 0.021897 2245700 1559.5 1703.2 1490.4 1417.7 1440.5 1814 1789.2 1831.9 1515.1 1439.9 TRUE FALSE FALSE 1376.697774 1755.673573 1570.975532 1475.519934 1334.237185 1779.400972 1858.210043 2040.436091 1452.646937 1431.335411 0.96182751 1.226598294 1.097559328 1.03086944 0.932162493 1.2431754 1.298235221 1.425547133 1.014889261 1 10.48314607 -1.00000001 0.409267401 0.991592207 9.129282475 0.651339027 0.092568084 27.21481577 0.316786653 0.022841434 181.7748425 0.099999998 1.00000001 8.137690268 MALPPQEDATAS(ph)PPRQK ddPTM_HeLa_CUDC101_4h_R1 5 MALPPQEDATASPPRQK 17 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MALPPQEDAT(0.06)AS(0.94)PPRQK;MALPPQEDAT(0.015)AS(0.985)PPRQK;MALPPQEDAT(0.001)AS(0.999)PPRQK;MALPPQEDAT(0.001)AS(0.999)PPRQK;MALPPQEDAT(0.013)AS(0.987)PPRQK ;;;; 114.75 0.00036217 356754000 19891.8 21998.7 20888.4 20960.8 27717.5 22581.7 22406.5 26760 23624.5 19931.2 TRUE FALSE FALSE 17560.11336 22676.45387 22017.69009 21815.67202 25672.83525 22150.9917 23270.72621 29806.25023 22650.68811 19812.64834 0.886308234 1.144544308 1.111294649 1.101098231 1.29578009 1.118022756 1.174538901 1.504405152 1.143243837 1 14.27413412 -1.00000001 0.25622166 0.93385469 4.176713616 0.471946271 0.113611022 20.97640032 0.263316639 0.055421748 29.92202444 0.099999998 1.00000001 3.242858926 TTGIVMDSGDGVTHTVPIYEGYALPHAILR ddPTM_HeLa_CUDC101_4h_R1 5 TTGIVMDSGDGVTHTVPIYEGYALPHAILR 30 0 P60709;A0A2R8Y793;A0A2R8YEA7;P63261;I3L3I0;I3L1U9;I3L4N8 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;; ;;;; 156.47 7.61E-17 473909000 7637.52 6256.93 5736.91 5247.56 10233.6 7907.82 7111.23 7122.98 7552.73 6665.34 FALSE FALSE TRUE 6742.261483 6449.698597 6047.064708 5461.578179 9478.687716 7756.991509 7385.512523 7933.831251 7241.403273 6625.694261 1.017593209 0.9734374 0.912668842 0.824302777 1.430595398 1.170743956 1.114677531 1.19743395 1.092927471 1 12.69385592 -5.769535246 24.99999977 0.986125241 1.216126725 0.605113573 0.101504066 97.18910241 300120.3515 0.014268913 0.026194741 1.70E-06 5.769535246 0.230001484 SS(ph)PGGQDEGGFMAQGK ddPTM_HeLa_CUDC101_4h_R1 2 SSPGGQDEGGFMAQGK 16 0 F5GZ78;A0A1B0GTU4;P49023;A0A1B0GV30 F5GZ78 PXN Paxillin 1 0 S(0.031)S(0.969)PGGQDEGGFMAQGK;S(0.053)S(0.947)PGGQDEGGFMAQGK ; 195.5 3.34E-16 27055500 3740 3151.2 3158.7 3244.6 3532.8 3132.3 3003.8 2824.1 2974.4 3533.3 TRUE FALSE FALSE 3301.602869 3248.284737 3329.468877 3376.928812 3272.192382 3072.556596 3119.657572 3145.584129 2851.793973 3512.283774 0.940015979 0.924835505 0.94794985 0.961462407 0.931642371 0.874803061 0.888213417 0.895595097 0.811948623 1 11.7781937 -1.000000009 0.032425976 1.301520109 0.373433986 0 0.061036609 366.591166 0.919557696 8.153078009 21.00322527 0.099999998 1.000000009 -0.928086123 WEGGDSNS(ph)DDYDLESDMSNGWDPNEMFK ddPTM_HeLa_CUDC101_4h_R1 1 WEGGDSNSDDYDLESDMSNGWDPNEMFK 28 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BSK9;Q8WWM7-7;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 1 0 WEGGDS(0.298)NS(0.41)DDY(0.275)DLES(0.015)DMS(0.002)NGWDPNEMFK 53.361 0.0032016 0 1048.4 1115.9 1077.8 880.14 1096 1025.9 813.06 1310.3 1362.3 853.81 TRUE FALSE FALSE 925.5081413 1150.279556 1136.069128 916.0359135 1015.150264 1006.332667 844.4199966 1459.459256 1306.145417 848.7315001 1.090460459 1.355292641 1.338549504 1.079300006 1.1960794 1.185690253 0.994920062 1.719577105 1.538938306 1 9.729164413 -1.000000008 0.074306041 0.74259818 2.296575361 0 0.250947028 209.7655883 1.155865289 4.059437774 33.96376306 0.099999998 1.000000008 1.553977181 TTGQVVAMK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TTGQVVAMKK 10 1 A0A087WZZ9;P06493;E5RIU6;A0A024QZP7;P06493-2 A0A087WZZ9 CDK1;CDC2 Cyclin-dependent kinase 1 0 1 ; TTGQVVAMK(1)K;TTGQVVAMK(1)K 157.24 0.0004022 39481000 11912.8 7565.3 5364 8611.3 8693.1 6834.7 7356.2 6951.3 6455.7 4139.5 FALSE TRUE FALSE 10516.39964 7798.377926 5653.994065 8962.506035 8051.827332 6704.339485 7639.931098 7742.607894 6189.593314 4114.87807 2.5557014 1.895166222 1.374036841 2.178073295 1.95675964 1.62929238 1.856660384 1.881612957 1.504198474 1 12.00663397 -6.240127251 24.69334167 1.743304507 1.886105936 0.06297981 0.398266244 3827.81539 4435105.483 0.090588472 0.15012521 5.75E-07 6.240127251 0.142801429 SATDGNTS(ph)TTPPTSAK ddPTM_HeLa_CUDC101_4h_R1 1 SATDGNTSTTPPTSAK 16 0 A0A669KAX4;Q13620-1;Q13620;A0A669KAU9;K4DI93 A0A669KAX4;K4DI93 CUL4B Cullin-4B 1 0 SATDGNT(0.106)S(0.415)T(0.237)T(0.237)PPT(0.003)S(0.001)AK 152.71 0.00014202 72112000 5575.4 4451.5 4459.8 4933.9 4962.8 5162.4 4661.7 4730.3 4793.1 4758.2 TRUE FALSE FALSE 4921.860064 4588.645439 4700.910278 5135.125768 4596.704131 5063.935821 4841.503331 5268.778231 4595.526389 4729.898015 1.040584818 0.970136232 0.993871382 1.085673677 0.971840009 1.070622623 1.023595713 1.113930621 0.97159101 1 12.20759336 -1.000000008 0.812175739 1.016434878 26.11469732 0.381830772 0.038671462 408.6813935 1.269926065 0.005424285 18905.79749 0.099999998 1.000000008 25.09826244 S(ph)LTPPPSSTESK ddPTM_HeLa_CUDC101_4h_R1 1 SLTPPPSSTESK 12 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 S(0.85)LT(0.15)PPPSSTESK 143.55 0.0011262 135630000 5115.7 4885.1 4891 4796.5 5559.4 4588.8 5280.9 4987.9 5435.8 5038.1 TRUE FALSE FALSE 4516.045401 5035.604141 5155.422254 4992.122002 5149.294138 4501.276285 5484.586082 5555.702374 5211.734023 5008.133157 0.901742278 1.005485274 1.02940998 0.996802969 1.028186347 0.898793252 1.095135834 1.109335994 1.040654044 1 12.29005721 -1.000000008 0.555281074 0.96265843 8.501896684 0.226666498 0.057760214 92.22073469 0.758175051 0.010751127 834.4475943 0.099999998 1.000000008 7.539238254 GYYSPYS(ph)VSGSGST(ph)AGSR ddPTM_HeLa_CUDC101_4h_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 2 0 GYYS(0.119)PYS(0.53)VS(0.349)GS(0.002)GS(0.196)T(0.45)AGS(0.354)R 127.49 0.00026581 57222000 3407.4 2504 3001.4 3145.8 3290 3222.1 3749.2 4770.7 2569.6 2656.3 TRUE FALSE FALSE 3007.989737 2581.145272 3163.664763 3274.099321 3047.303255 3160.643811 3893.8079 5313.777204 2463.68 2640.500209 1.139174209 0.977521328 1.198130851 1.239954199 1.154062872 1.196986768 1.474647828 2.012413097 0.933035336 1 11.36659554 -1.000000006 0.663181352 1.072582629 93.5662109 0.918304578 0.085413573 40.08487721 0.228590039 0.014029933 5469.400564 0.099999999 1.000000006 92.49362827 up AAKPGPAEAPSPTASPSGDAS(ph)PPATAPYDPR ddPTM_HeLa_CUDC101_4h_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 AAKPGPAEAPSPTAS(0.002)PS(0.037)GDAS(0.818)PPAT(0.125)APY(0.018)DPR 69.857 1.89E-05 51957000 1486.3 1658.4 1567.2 1634.4 1485.1 1516 1583.2 1837.4 2008.8 1470.3 TRUE FALSE FALSE 1312.078167 1709.493338 1651.927573 1701.057896 1375.547132 1487.084826 1644.264554 2046.562189 1925.996414 1461.55459 0.897727786 1.169640429 1.130253761 1.163868875 0.941153441 1.017467863 1.125010701 1.40026394 1.317772478 1 10.513288 -1.000000006 0.795150192 0.990173041 99.87461159 0.123069386 0.141508344 272.8030817 0.913806524 0.017868391 48603.71618 0.099999999 1.000000006 98.88443855 S(ph)LGDEGLNR ddPTM_HeLa_CUDC101_4h_R1 1 SLGDEGLNR 9 0 Q01970-2;Q01970 Q01970-2 PLCB3 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3" 1 0 S(1)LGDEGLNR 98.898 0.018775 7478300 963.24 1065.5 915.62 935.57 1137.4 1263 995.34 1264 1154.9 895.38 TRUE FALSE FALSE 850.3304674 1098.326792 965.1211868 973.7265885 1053.496268 1238.910379 1033.730597 1407.888651 1107.294533 890.0542399 0.955369268 1.233999843 1.084339744 1.094008146 1.183631537 1.391949303 1.161424271 1.581800959 1.244075342 1 9.797749446 -1.000000005 0.261668062 0.960742871 4.645687976 0.431443148 0.13306928 17.68008444 0.222944885 0.049166609 29.48286466 0.099999999 1.000000005 3.684945106 SGTPPRQGS(ph)ITSPQANEQSVT(ph)PQRR ddPTM_HeLa_CUDC101_4h_R1 1 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 0 S(0.059)GT(0.062)PPRQGS(0.659)IT(0.157)S(0.063)PQANEQS(0.328)VT(0.672)PQRR 61.525 0.0058757 42224000 1655.9 1783.9 1444.4 2293.3 2085.3 1569 1778.6 2456.1 1970.5 1289.9 TRUE FALSE FALSE 1461.797912 1838.859845 1522.488633 2386.830686 1931.471574 1539.073939 1847.201198 2735.692496 1889.275156 1282.227617 1.140045568 1.434113429 1.18737782 1.861471906 1.506340643 1.20031258 1.440618789 2.133546696 1.473431963 1 10.32443667 -1.000000004 0.13454369 0.822533172 4.169831202 0.237837765 0.285436957 45.6618181 0.410539911 0.74502858 29.28791879 0.099999999 1.000000004 3.34729803 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR ddPTM_HeLa_CUDC101_4h_R1 5 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR 30 0 P20700 P20700 LMNB1 Lamin-B1 0 0 ;;;; ;;;; 182.23 6.68E-28 18992100 3142.37 3087.14 2933.26 2484.35 3037.89 3448.55 2852.73 2773.59 3524.55 3290.99 FALSE FALSE TRUE 2774.026152 3182.251124 3091.840908 2585.672531 2813.790907 3382.774654 2962.760752 3089.324274 3379.266557 3271.415045 0.847959098 0.97274454 0.945108115 0.790383518 0.860114314 1.034040196 0.905651136 0.944338836 1.032967847 1 11.67569909 -5.283191426 24.86564892 0.916856762 0.955774204 0.05201648 0.075529399 1958.371094 2238691.317 0.011355804 0.025409157 5.21E-06 5.283191426 0.038917442 TTK(ac)LGQR ddPTM_HeLa_CUDC101_4h_R1 1 TTKLGQR 7 1 O60885;O60885-2;O60885-3;M0QZD9 O60885 BRD4 Bromodomain-containing protein 4 0 1 TTK(1)LGQR 105.14 0.012 6920100 3262.3 2131.4 1306 3440.2 2588.7 3139.1 3043.9 1685.1 1377.5 927.33 FALSE TRUE FALSE 2879.898139 2197.065908 1376.60631 3580.506226 2397.736758 3079.226898 3161.304243 1876.924973 1320.718867 921.8141999 3.12416335 2.383415126 1.493366354 3.88419513 2.601106339 3.340398638 3.429437562 2.036120698 1.432738688 1 9.848332181 -9.523297204 0.63193355 0.584037112 2.858333229 0.451880825 0.682950595 0.842409744 0.422982148 1.148863904 0.141787421 3.00E-10 9.523297204 2.274296117 LGSQHS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 1 LGSQHSPGR 9 0 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0;B6VEX4;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 LGS(0.012)QHS(0.988)PGR 91.469 0.017062 1088500 997.71 761.84 755.75 1165 624.42 1059.3 947.96 909.12 711.14 731.35 TRUE FALSE FALSE 880.7599462 785.3113874 796.608131 1212.513736 578.3577806 1039.095617 984.5231347 1012.610546 681.8265082 726.9998977 1.211499409 1.080208388 1.09574724 1.667832058 0.795540388 1.42929266 1.354227336 1.39286202 0.937863279 1 9.505811351 -1.000000004 0.038820993 0.266962738 2.781271579 0.26890112 0.214606636 781.5700637 2.336613702 42.65351563 132.0932557 0.099999999 1.000000004 2.514308841 LSSSGAPPADFPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 LSSSGAPPADFPSPR 15 0 Q8NG08 Q8NG08 HELB DNA helicase B 1 0 LSSSGAPPADFPS(1)PR;LSSSGAPPADFPS(1)PR ; 147.51 0.0002754 14500100 4564.6 4148.9 3803.1 3725.7 4748.4 4750.4 3866.9 4132.7 4331.6 3751.5 TRUE FALSE FALSE 4029.544507 4276.722691 4008.70709 3877.65015 4398.119992 4659.794035 4016.047628 4603.149863 4153.049615 3729.185911 1.080542672 1.146824748 1.074955013 1.039811434 1.179378046 1.249547259 1.076923415 1.234357839 1.113661189 1 11.86464501 -1.000000004 0.063495615 0.808499362 1.784228956 0.260639814 0.06683492 152.9065889 0.729898363 2.202013533 13.68828159 0.099999999 1.000000004 0.975729594 FVLMAT(ph)PNLSR ddPTM_HeLa_CUDC101_4h_R1 2 FVLMATPNLSR 11 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3 A0A087X1U1 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" 1 0 FVLMAT(1)PNLSR;FVLMAT(0.998)PNLS(0.002)R ; 137.95 0.0073526 48981000 2656.4 2065.1 2434.6 2325.4 2734.9 2645.2 2813.3 3314.9 2257 2409.9 TRUE FALSE FALSE 2345.020819 2128.723283 2566.22184 2420.239863 2533.151876 2594.747217 2921.809923 3692.254817 2163.965505 2395.565808 0.978900605 0.888609813 1.071238299 1.010299886 1.057433642 1.083145873 1.219674247 1.541287159 0.903321252 1 11.22615073 -1.000000004 0.677737958 0.986457497 61.93255562 0.92441983 0.049332587 35.4238931 0.191186141 0.006744365 3263.782075 0.099999999 1.000000004 60.94609813 MLLS(ph)WDGGESR ddPTM_HeLa_CUDC101_4h_R1 1 MLLSWDGGESR 11 0 E7ER68;Q658Y4 E7ER68 FAM91A1 Protein FAM91A1 1 0 MLLS(1)WDGGESR 108.68 0.0073708 2921400 3451.9 2934.9 2491.9 2760.7 3234.3 2717.8 2983.3 2127.7 3656.1 3185.7 TRUE FALSE FALSE 3047.273515 3025.32079 2626.619652 2873.293279 2995.712133 2665.962493 3098.36688 2369.908768 3505.394011 3166.751315 0.962271177 0.955338923 0.829436666 0.907331518 0.94598907 0.841860389 0.978405493 0.748372238 1.10693694 1 11.62878786 -1.000000004 0.107182126 1.059457299 0.399081116 0.4867046 0.068650037 74.13600344 0.55961573 0.364281996 7.258545884 0.099999999 1.000000004 -0.660376183 TAAPS(ph)PSLLYK ddPTM_HeLa_CUDC101_4h_R1 2 TAAPSPSLLYK 11 0 Q9BTC0;Q9BTC0-1;Q9BTC0-2;Q9BTC0-3 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 T(0.063)AAPS(0.877)PS(0.06)LLYK;T(0.005)AAPS(0.96)PS(0.035)LLYK ; 128.68 0.002366 116596000 7224.9 6639.6 5866.3 6241.1 7075.8 5646.6 6254.6 4751.4 6476.7 7228.4 TRUE FALSE FALSE 6378.008174 6844.158206 6183.449923 6495.639034 6553.832331 5538.900513 6495.842017 5292.28017 6209.727685 7185.405155 0.887633757 0.952508322 0.860556891 0.904004561 0.91210338 0.770854307 0.90403281 0.736531908 0.864213994 1 12.81085379 -1.000000003 0.049209928 1.261891354 0.18202169 0.266474397 0.063526985 224.6727736 0.843932335 4.479396388 18.65514989 0.099999999 1.000000003 -1.079869664 LDIDSPPIT(ph)AR ddPTM_HeLa_CUDC101_4h_R1 3 LDIDSPPITAR 11 0 P14618;B4DNK4;P14618-2;H3BTN5;H3BQ34;H3BUW1;H3BTJ2;H3BT25;H3BU13;H3BN34;H3BQZ3 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 1 0 LDIDSPPIT(1)AR;LDIDSPPIT(1)AR;LDIDSPPIT(1)AR ;; 158.86 0.00069794 24283000 4545.6 4997.8 4590.1 4231.2 5521.7 5045.4 4747.4 5339.7 3954.9 5187.8 TRUE FALSE FALSE 4012.771659 5151.776294 4838.25469 4403.766625 5114.375192 4949.167401 4930.508808 5947.549864 3791.877348 5156.942735 0.778129963 0.998998158 0.938202136 0.853949103 0.991745585 0.959709591 0.956091441 1.153309271 0.735295609 1 12.33230031 -1.000000003 0.729709086 0.904754696 37.51182504 0.435169606 0.086117797 254.8127247 1.121532853 0.014702046 15308.39231 0.099999999 1.000000003 36.60707035 SIPASFWWAT(ph)IT(ph)MTTVGY(ph)GDIY(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SIPASFWWATITMTTVGYGDIYPK 24 0 Q14721 Q14721 KCNB1 Potassium voltage-gated channel subfamily B member 1 4 0 S(0.165)IPAS(0.179)FWWAT(0.647)IT(0.631)MT(0.203)T(0.203)VGY(0.974)GDIY(0.998)PK 46.833 0.0025951 0 924.23 654.35 781.21 708.6 906.53 851 786.55 926.61 752.83 733.13 TRUE FALSE FALSE 815.8931604 674.5097479 823.4445756 737.4997708 839.657088 834.7685929 816.887497 1032.091537 721.7980288 728.7693102 1.119549285 0.925546313 1.129911159 1.011979732 1.152157584 1.145449707 1.120913691 1.416211581 0.990434173 1 9.509318396 -1.000000003 0.720955795 1.052475617 51.00654769 0.712685535 0.069198484 126.7126337 0.578125898 0.011193847 10250.68915 0.099999999 1.000000003 49.95407208 RIDFTPVS(ph)PAPS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 3 RIDFTPVSPAPSPTR 15 1 G1UD79;Q7Z309-3;Q7Z309-4;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 2 0 RIDFT(0.421)PVS(0.583)PAPS(0.654)PT(0.341)R;RIDFT(0.005)PVS(0.961)PAPS(0.698)PT(0.335)R;RIDFT(0.002)PVS(0.998)PAPS(0.983)PT(0.017)R ;; 121.51 0.0017505 347500000 9912.1 9151.2 8985.8 8906.7 10322.2 9922.5 9419.5 10001.2 10508.5 9526.5 TRUE FALSE FALSE 8750.218664 9433.137625 9471.599529 9269.953724 9560.751871 9733.244845 9782.81327 11139.69618 10075.33518 9469.835954 0.924009529 0.996124713 1.000186231 0.978892746 1.00960058 1.027815571 1.03304992 1.176334652 1.06393978 1 13.20912372 -1.000000003 0.592248672 0.968623169 12.88416759 0.616423956 0.038661321 50.63689463 0.37037784 0.005767916 781.4689733 0.099999999 1.000000003 11.91554443 SVSSVLSSLT(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 2 SVSSVLSSLTPAK 13 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 0 SVSSVLS(0.006)S(0.142)LT(0.852)PAK;SVSSVLS(0.015)S(0.088)LT(0.898)PAK ; 202.25 3.52E-16 153025000 7187.1 6270.1 6665 6450.5 9309.3 7864.6 5809.7 3045.19 7596.1 8308.8 TRUE FALSE FALSE 6344.639033 6463.274349 7025.330061 6713.579271 8622.571486 7714.595858 6033.782075 3391.842121 7282.985543 8259.378888 0.768173869 0.782537578 0.850588181 0.812843116 1.043973355 0.934040678 0.730537024 0.410665519 0.881783684 1 13.01181758 -1.000000003 0.062627029 1.190594871 3.19E-08 0.236287223 0.14623208 369.18743 1.739990128 6.576629075 39.90802329 0.099999999 1.000000003 -1.19059484 NDQEPPPEALDFS(ph)DDEKEKEAK ddPTM_HeLa_CUDC101_4h_R1 1 NDQEPPPEALDFSDDEKEKEAK 22 2 Q96HR8-2;Q96HR8 Q96HR8-2 NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 1 0 NDQEPPPEALDFS(1)DDEKEKEAK 41.76 0.037204 72979000 2358.5 2566.3 2813 2320.1 3273 2501.5 2780.8 3673.6 2638 2635.9 TRUE FALSE FALSE 2082.040205 2645.364661 2965.079289 2414.723706 3031.557311 2453.788055 2888.056388 4091.787775 2529.260523 2620.22155 0.794604642 1.009595796 1.131613962 0.921572341 1.156985107 0.936481137 1.102218394 1.561619007 0.965284987 1 11.35547309 -1.000000003 0.803899464 0.934040303 158.6688085 0.701274955 0.107640453 213.4113753 0.688238013 0.019694444 61367.1553 0.099999999 1.000000003 157.7347682 AALQTAPESADDS(ph)PSQLSK ddPTM_HeLa_CUDC101_4h_R1 2 AALQTAPESADDSPSQLSK 19 0 O43524-2;O43524 O43524-2 FOXO3 Forkhead box protein O3 1 0 AALQTAPES(0.001)ADDS(0.899)PS(0.1)QLSK;AALQT(0.001)APES(0.177)ADDS(0.818)PS(0.005)QLSK ; 264.1 5.10E-106 11973000 5224.6 3972.8 4527 4292.6 5305.1 4123.5 4090 3659.2 4789.7 4994.3 TRUE FALSE FALSE 4612.180308 4095.197259 4771.743313 4467.670782 4913.753342 4044.851108 4247.75267 4075.748537 4592.266539 4964.593681 0.929014659 0.824880649 0.961154854 0.899906633 0.989759416 0.814739608 0.855609329 0.820963164 0.925003501 1 12.27745993 -1.000000003 0.05570742 1.190486964 0.333660913 0.285425457 0.056294511 221.2047422 0.934520497 3.161003662 15.81162428 0.099999999 1.000000003 -0.85682605 MLWGSDPYPHAEPQQAT(ph)TPK ddPTM_HeLa_CUDC101_4h_R1 3 MLWGSDPYPHAEPQQATTPK 20 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 MLWGSDPYPHAEPQQAT(0.548)T(0.452)PK;MLWGSDPYPHAEPQQAT(0.827)T(0.173)PK;MLWGSDPYPHAEPQQAT(0.83)T(0.17)PK ;; 105.57 0.00033534 80587000 5348.4 4383.1 4055.87 3747.6 5137 4875.3 4261.71 3101.37 4453.8 5098.2 TRUE FALSE FALSE 4721.46866 4518.138116 4275.142601 3900.443327 4758.053744 4782.311775 4426.085582 3454.417425 4270.212479 5067.87568 0.931646504 0.891525049 0.84357685 0.769640688 0.938865522 0.943652149 0.873361121 0.681630261 0.842604032 1 12.30716542 -1.000000003 0.057994341 1.232246554 0.176701359 0.059521017 0.085823685 230.1461009 1.009729414 3.908862482 20.84629938 0.099999999 1.000000003 -1.055545194 GGPGAAPGGASPASSSSAAS(ph)SPSSGR ddPTM_HeLa_CUDC101_4h_R1 2 GGPGAAPGGASPASSSSAASSPSSGR 26 0 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 1 0 GGPGAAPGGASPASSSSAAS(0.958)S(0.041)PSSGR;GGPGAAPGGASPASSS(0.001)S(0.135)AAS(0.785)S(0.079)PSSGR ; 442.15 0 35067000 3994.32 3524.48 3412.6 3008.08 3331.62 3440.31 3026.39 2580.08 3072.44 3898.1 TRUE FALSE FALSE 3526.111865 3633.065051 3597.095479 3130.762504 3085.85303 3374.691819 3143.118876 2873.785878 2945.792723 3874.913928 0.909984565 0.937586 0.928303324 0.807956657 0.796366858 0.870907556 0.811145469 0.741638636 0.76022146 1 11.91994855 -1.000000003 0.107481698 1.075043105 0.127714867 0 0.081603235 33.93664157 0.256750655 0.238101411 4.780733202 0.099999999 1.000000003 -0.947328239 KVVDYSQFQES(ph)DDADEDYGRDSGPPTK ddPTM_HeLa_CUDC101_4h_R1 3 KVVDYSQFQESDDADEDYGRDSGPPTK 27 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 KVVDYSQFQES(1)DDADEDYGRDSGPPTK;KVVDY(0.005)S(0.015)QFQES(0.972)DDADEDY(0.007)GRDS(0.002)GPPTK;KVVDY(0.001)S(0.003)QFQES(0.944)DDADEDY(0.022)GRDS(0.03)GPPT(0.001)K ;; 114.34 2.49E-08 472985000 7300.98 7417.41 7412.96 7178.3 8246.92 7808.6 7749.1 8075.87 8085.13 7463.13 TRUE FALSE FALSE 6445.170192 7645.93161 7813.727041 7471.062101 7638.561142 7659.663965 8047.985383 8995.194397 7751.857519 7418.738971 0.868768967 1.030624159 1.053241942 1.007052833 1.029630665 1.032475195 1.084818514 1.212496414 1.044902314 1 12.85695826 -1.000000003 0.368235421 0.945736744 4.35656283 0.494886859 0.056897549 29.04551404 0.357511439 0.017536118 70.84343276 0.099999999 1.000000003 3.410826087 RPPIS(ph)DSEELSAK ddPTM_HeLa_CUDC101_4h_R1 1 RPPISDSEELSAK 13 1 P42568-2;P42568 P42568-2 MLLT3 Protein AF-9 1 0 RPPIS(0.965)DS(0.035)EELSAK 67.299 0.031313 13960000 2940.8 2638.1 2043.7 2420.8 3018 3117.8 2927 2302.3 2756.3 2272.6 TRUE FALSE FALSE 2596.083882 2719.376734 2154.188604 2519.530688 2795.368153 3058.33316 3039.89537 2564.384526 2642.684147 2259.082474 1.14917623 1.203752747 0.953567932 1.115289378 1.237390925 1.353794381 1.345632754 1.13514427 1.169804192 1 11.14152123 -1.000000002 0.068318721 0.774248379 2.087619035 0.185280362 0.110753817 177.3732925 0.905657345 3.187358647 22.63689197 0.099999999 1.000000002 1.313370656 TTPSYVAFTDTER ddPTM_HeLa_CUDC101_4h_R1 5 TTPSYVAFTDTER 13 0 P11142;E9PKE3;P11142-2;E9PNE6;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65;P54652;P17066;P48741;A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;Q53FA3;P34931 P11142;P54652;P17066;A0A0G2JIW1;Q53FA3 HSPA8;HSPA2;HSPA6;HSPA7;HSPA1B;HSPA1A;HSPA1L Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 0 0 ;;;; ;;;; 311.02 1.46E-142 199920900 3938.639 3671.66 3467.89 3845.584 3493.169 3173.72 3114.25 3848.4 3543.96 4158.64 FALSE FALSE TRUE 3476.957707 3784.779493 3655.374623 4002.423538 3235.484882 3113.186579 3234.367666 4286.4863 3397.876469 4133.904224 0.841083276 0.915546004 0.884242698 0.968194549 0.782670499 0.753086286 0.782400242 1.03690992 0.82195336 1 12.01328925 -9.710125571 0.544630044 1.051204526 0.860002937 0 0.100987144 2.143588146 0.669292436 0.229083801 0.019769755 1.95E-10 9.710125571 -0.191201589 TAS(ph)PPPPPKR ddPTM_HeLa_CUDC101_4h_R1 3 TASPPPPPKR 10 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 T(0.111)AS(0.889)PPPPPKR;T(0.05)AS(0.95)PPPPPKR;T(0.047)AS(0.953)PPPPPKR ;; 93.839 0.012231 1722990000 11861.1 11806.2 11505.3 12169.7 12785.4 12396.7 11866.3 12639.1 13016.2 12456.6 TRUE FALSE FALSE 10470.75984 12169.93503 12127.31132 12666.03297 11842.24651 12160.2536 12323.98717 14077.88405 12479.66673 12382.50759 0.845608998 0.982832834 0.979390582 1.022897251 0.956369009 0.982050971 0.995273944 1.136917054 1.007846483 1 13.59601588 -1.000000002 0.546652177 0.936989885 9.003194836 0.392861955 0.052450378 87.59828479 0.739038152 0.012224392 832.2800264 0.099999999 1.000000002 8.066204951 SLSNSNPDIS(ph)GTPTSPDDEVR ddPTM_HeLa_CUDC101_4h_R1 1 SLSNSNPDISGTPTSPDDEVR 21 0 Q96N67-2;Q96N67-6;Q96N67;Q96N67-4;Q96N67-3;Q96N67-5;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-2 DOCK7 Dedicator of cytokinesis protein 7 1 0 SLSNS(0.147)NPDIS(0.748)GT(0.103)PT(0.002)SPDDEVR 308.1 1.20E-146 36422000 1467.9 1243.1 1224.8 1147.3 1288.2 1190 1269.8 949.23 1164.4 1393.8 TRUE FALSE FALSE 1295.834987 1281.398438 1291.016393 1194.091853 1193.172052 1167.302733 1318.776611 1057.286506 1116.402939 1385.509616 0.935276791 0.924857123 0.931798941 0.861843065 0.861179193 0.842507854 0.951835048 0.763102973 0.805770618 1 10.43620101 -1.000000002 0.070164153 1.140623115 0.33999623 0 0.074319673 102.7949724 0.537780651 1.093864431 8.172614436 0.099999999 1.000000002 -0.800626885 TTQIINITMTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 TTQIINITMTKK 12 1 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 0 1 TTQIINITMTK(1)K 135.02 0.00018982 487320 320.71 296.47 310.28 206.05 175.51 336.93 356.43 146.98 332.15 292.06 FALSE TRUE FALSE 283.11686 305.6038893 327.0546753 214.4536096 162.562977 330.5036216 370.1776245 163.7116091 318.4586364 290.3228141 0.975179511 1.052634772 1.126520754 0.73867295 0.559938693 1.138400448 1.275055237 0.563895089 1.096912199 1 8.181514136 -6.265885457 24.92264935 1.003257555 0.877848981 0.14729627 0.217224761 799.7744388 4483160.693 0.032749892 0.051102235 5.42E-07 6.265885457 -0.125408573 RILS(ph)DVTHSAVFGVPASK ddPTM_HeLa_CUDC101_4h_R1 2 RILSDVTHSAVFGVPASK 18 1 Q2M2I8-2;Q2M2I8;E9PG46 Q2M2I8-2 AAK1 AP2-associated protein kinase 1 1 0 RILS(0.916)DVT(0.057)HS(0.027)AVFGVPASK;RILS(0.942)DVT(0.057)HS(0.001)AVFGVPASK ; 77.231 0.0064753 68665000 6421.6 6918.6 5692.4 6078.2 8577.7 7972.1 7829.8 9262.2 6316 5530.4 TRUE FALSE FALSE 5668.869783 7131.753865 6000.148363 6326.095268 7944.94016 7820.045475 8131.798009 10316.57141 6055.651807 5497.504935 1.031171386 1.297271026 1.091431192 1.150721162 1.445190183 1.422471752 1.479179756 1.876591569 1.101527307 1 12.42456128 -1.000000002 0.279015702 0.982344888 7.426672505 0.861323113 0.096175949 9.918553126 0.126349725 0.037862154 31.54249816 0.1 1.000000002 6.444327617 KQEGPATQVDSAVGTLPAT(ph)SPQSTSVQAK ddPTM_HeLa_CUDC101_4h_R1 1 KQEGPATQVDSAVGTLPATSPQSTSVQAK 29 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06 E7ETY2 TCOF1 Treacle protein 1 0 KQEGPATQVDS(0.002)AVGT(0.085)LPAT(0.433)S(0.433)PQS(0.025)T(0.018)S(0.005)VQAK 104.89 1.20E-08 29118000 4009.5 3346.8 2958.4 3510.1 3467.1 3439.4 3069.1 2715.8 4035.6 3785.8 TRUE FALSE FALSE 3539.512488 3449.910941 3118.340053 3653.25705 3211.33894 3373.799175 3187.476215 3024.955694 3869.25086 3763.281893 0.940538761 0.916729344 0.828622501 0.970763592 0.853334677 0.896504506 0.846993743 0.803807894 1.028158658 1 11.87777564 -1.000000002 0.081787801 1.109585626 0.336517607 0.697834997 0.03962856 69.41587069 0.416622329 0.594161318 6.085849458 0.1 1.000000002 -0.773068018 RLS(ph)QPESAEK ddPTM_HeLa_CUDC101_4h_R1 5 RLSQPESAEK 10 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(0.971)QPES(0.029)AEK;RLS(1)QPESAEK;RLS(0.509)QPES(0.491)AEK ;;;; 141.73 0.0019791 711371200 17366.5 15913.6 17015.7 20941.6 22257.4 25004.4 25795.8 39777.8 17066.3 18246.6 TRUE FALSE FALSE 15330.8252 16403.87915 17935.62021 21795.68897 20615.51594 24527.48273 26790.75265 44305.94396 16362.81989 18138.06841 0.845229208 0.904389529 0.988838492 1.201654359 1.136588278 1.352265422 1.477045518 2.442704645 0.902125823 1 14.14673321 -1.000000002 0.587074057 0.932834847 86.07051645 0.958500552 0.091751713 20.71311586 0.154070993 0.018034781 2260.652618 0.1 1.000000002 85.13768161 up (ac)MEDLDQSPLVSS(ph)SDSPPRPQPAFK ddPTM_HeLa_CUDC101_4h_R1 3 MEDLDQSPLVSSSDSPPRPQPAFK 24 1 Q9NQC3-5;Q9NQC3;Q9NQC3-2;Q9NQC3-4 Q9NQC3-5 RTN4 Reticulon-4 1 0 MEDLDQS(0.007)PLVS(0.155)S(0.821)S(0.014)DS(0.002)PPRPQPAFK;MEDLDQS(0.024)PLVS(0.04)S(0.727)S(0.14)DS(0.069)PPRPQPAFK;MEDLDQS(0.289)PLVS(0.205)S(0.452)S(0.034)DS(0.019)PPRPQPAFK ;; 98.766 4.23E-09 406745000 16178.5 14550.6 9598.7 13099.9 14749.8 17782 14737.7 16898.5 11792.1 11792.9 TRUE FALSE FALSE 14282.08076 14998.88674 10117.63476 13634.17054 13661.73664 17442.83798 15306.13803 18822.15693 11306.02465 11722.75531 1.218321152 1.279467697 0.863076512 1.163051705 1.165403208 1.487946948 1.305677516 1.605608617 0.964451134 1 13.51702408 -1.000000002 0.356693234 1.082430873 7.364851805 0.607561623 0.136751423 30.55502485 0.380478661 0.03960901 131.6187605 0.1 1.000000002 6.282420932 T(ph)PTPEPAEVETR ddPTM_HeLa_CUDC101_4h_R1 1 TPTPEPAEVETR 12 0 F8W6G1;Q9UHY1 F8W6G1 NRBP1 Nuclear receptor-binding protein 1 0 T(0.995)PT(0.005)PEPAEVETR 149.57 0.0032147 96567000 555.3 511.4 385.19 563.02 581.9 442.51 450.7 328.36 483.35 584.74 TRUE FALSE FALSE 490.2085758 527.1556278 406.0145365 585.9823892 538.9743963 434.069859 468.08365 365.7391751 463.4261084 581.2619405 0.843352268 0.906915783 0.698505284 1.008121035 0.92724873 0.746771513 0.805288661 0.629215763 0.797275851 1 9.183044638 -1.000000002 0.057010378 1.25777394 0.001123332 0.136734547 0.110717266 267.4668866 1.154788357 5.492293558 28.49519339 0.1 1.000000002 -1.256650609 GQAPSSTPGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 GQAPSSTPGKR 11 1 H3BS19;Q96JG9 H3BS19 ZNF469 Zinc finger protein 469 0 1 ; GQAPSSTPGK(1)R;GQAPSSTPGK(1)R 113.93 0.0040112 1013450 432.69 386.99 383.38 548.28 628.37 624 506.42 792.63 295.95 325.3 FALSE TRUE FALSE 381.9707341 398.9127032 404.1066825 570.6412283 582.016397 612.0982397 525.952789 882.8597953 283.7508157 323.3651011 1.181236728 1.233629423 1.249691698 1.764696395 1.799873873 1.89290136 1.626498305 2.730225965 0.877493628 1 8.337020176 -1 0.233273645 0.962379332 9.603222548 0.832694577 0.21268995 13.13404458 0.160533095 0.128084867 43.99788811 0.1 1 8.640843216 NEMGIPQQTTS(ph)PENAGPQNTK ddPTM_HeLa_CUDC101_4h_R1 1 NEMGIPQQTTSPENAGPQNTK 21 0 Q15398-1;Q15398;Q15398-3 Q15398-1 DLGAP5 Disks large-associated protein 5 1 0 NEMGIPQQT(0.071)T(0.266)S(0.663)PENAGPQNTK 116.7 3.80E-06 8915000 7207.4 6313.4 6137 5705.6 5870.3 6764.9 5472.3 4508.9 6678.1 7205.6 TRUE FALSE FALSE 6362.559498 6507.908371 6468.784783 5938.29903 5437.259664 6635.870804 5683.368444 5022.17495 6402.825891 7162.740771 0.888285602 0.908577956 0.903115859 0.82905402 0.759103231 0.926442966 0.793462813 0.701152689 0.893907248 1 12.80629601 -1.000000002 0.077272586 1.151557778 0.111186717 0.508453358 0.059067639 81.86141664 0.467187787 1.012298455 9.179907378 0.1 1.000000002 -1.040371061 NSASATTPLSGNS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 2 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 NSASAT(0.001)T(0.003)PLS(0.002)GNS(0.621)S(0.372)R;NSASATT(0.001)PLS(0.042)GNS(0.619)S(0.338)R ; 107.63 0.0030037 58160000 7049.9 6649.9 6679.1 6351.6 7275.8 6635.5 6610.9 6930.5 6338.8 6110.4 TRUE FALSE FALSE 6223.521409 6854.775537 7040.192349 6610.645702 6739.078729 6508.938893 6865.884627 7719.440106 6077.511981 6074.055069 1.02460734 1.12853365 1.159059684 1.088341417 1.109485945 1.071596951 1.130362591 1.270887409 1.000569128 1 12.56844427 -1.000000002 0.13573171 0.954072096 1.801188563 0.618953298 0.048212819 38.12512396 0.344959117 0.154586692 6.253542952 0.1 1.000000002 0.847116467 KSYT(ph)T(ph)PRKNK ddPTM_HeLa_CUDC101_4h_R1 1 KSYTTPRKNK 10 3 A0A2R8Y422 A0A2R8Y422 2 0 KS(0.31)Y(0.266)T(0.425)T(0.999)PRKNK 48.64 0.033469 18215000 4666.7 4505 4446.3 4360.4 6900.1 5108.1 5031.4 6309.4 4795.1 3132.4 TRUE FALSE FALSE 4119.6765 4643.79371 4686.680427 4538.235959 6391.09337 5010.671503 5225.462783 7027.636593 4597.443948 3113.768345 1.323051699 1.491374179 1.505147431 1.457473857 2.052526926 1.609198549 1.678179686 2.2569555 1.476488755 1 11.6044459 -1.000000002 0.106786264 0.632384957 4.919661677 0.544706756 0.227162333 33.64231373 0.253189064 1.079852394 21.30007303 0.1 1.000000002 4.28727672 RCQTAEADS(ph)ES(ph)DHEVPEPESEMK ddPTM_HeLa_CUDC101_4h_R1 1 RCQTAEADSESDHEVPEPESEMK 23 1 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 2 0 RCQT(0.244)AEADS(0.951)ES(0.787)DHEVPEPES(0.019)EMK 46.412 0.033203 12852000 3239.5 2566.2 2796.2 3022 3120.9 2902.5 3039 3162.1 3127.3 2404.3 TRUE FALSE FALSE 2859.770721 2645.26158 2947.37103 3145.250222 2890.677425 2847.139648 3156.215248 3522.060682 2998.39137 2389.999117 1.196557229 1.106804418 1.233210092 1.316004763 1.209488909 1.19127226 1.320592642 1.473666102 1.254557522 1 11.22279437 -1.000000001 0.040865072 0.314808607 2.733170176 0.315550347 0.100206237 244.9405483 0.769619184 12.45565358 40.90079257 0.1 1.000000001 2.418361569 S(ph)QSYIPTSGCR ddPTM_HeLa_CUDC101_4h_R1 2 SQSYIPTSGCR 11 0 A0A087WZ32;A0A087X038;A8K727;Q9HB19;E5RHB5 A0A087WZ32 PLEKHA2 Pleckstrin homology domain-containing family A member 2 1 0 S(0.988)QS(0.012)YIPTSGCR;S(0.743)QS(0.256)YIPTSGCR ; 191.48 2.25E-11 281150000 5941.9 3660.3 4413.7 3972.6 4092.6 4195 4525.9 7995.1 3601.5 2559.3 TRUE FALSE FALSE 5245.399489 3773.069504 4652.317973 4134.619799 3790.697052 4114.987364 4700.465479 8905.229867 3453.044646 2544.07717 2.061808325 1.483079817 1.82868587 1.625194333 1.490008675 1.617477415 1.847611203 3.500377258 1.357287698 1 11.31292672 -1.000000001 0.059121303 1.48E-09 5.667435722 0.390271037 0.497284228 301.4177305 1.346431926 27.00477023 148.6291005 0.1 1.000000001 5.667435721 DLS(ph)PTLIDNSAAK ddPTM_HeLa_CUDC101_4h_R1 2 DLSPTLIDNSAAK 13 0 Q9P2B4 Q9P2B4 CTTNBP2NL CTTNBP2 N-terminal-like protein 1 0 DLS(0.998)PT(0.002)LIDNSAAK;DLS(1)PTLIDNSAAK ; 263.98 3.95E-70 238180000 9911.3 9471.9 8290.5 8388.6 9738.9 9350.8 9079.6 8662 9266.5 8900.7 TRUE FALSE FALSE 8749.512439 9763.718012 8738.709507 8730.723367 9020.48075 9172.449069 9429.803213 9648.047067 8884.530948 8847.758241 0.988895967 1.103524503 0.987674987 0.98677237 1.019521613 1.036697525 1.065784457 1.090451028 1.004156161 1 13.11109625 -1.000000001 0.389207172 0.998411513 2.486606491 0.355638065 0.03347026 42.30820559 0.507494299 0.008449293 48.41436749 0.1 1.000000001 1.488194978 VTSAVVGPSHEVQEQSSGPFK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 VTSAVVGPSHEVQEQSSGPFKK 22 1 A0A3B3IRW6;Q2KHR3;Q2KHR3-2 A0A3B3IRW6 QSER1 Glutamine and serine-rich protein 1 0 1 VTSAVVGPSHEVQEQSSGPFK(1)K 174.04 3.21E-11 1764100 794.38 714.08 579.27 702.29 1084.1 887.57 1003.7 999 412.53 508.44 FALSE TRUE FALSE 701.2639806 736.0799584 610.5870884 730.9324218 1004.128103 870.641081 1042.413045 1112.722122 395.5253388 505.4157763 1.387499191 1.456385006 1.208088701 1.44620025 1.986736762 1.722623475 2.062486163 2.201597525 0.782574184 1 8.981326888 -1 0.174031736 0.950162235 6.368196633 0.852538741 0.169833837 14.64427709 0.15595895 0.212815418 20.90580323 0.1 1 5.418034398 S(ph)PPLIGSESAYESFLSADDKASGR ddPTM_HeLa_CUDC101_4h_R1 2 SPPLIGSESAYESFLSADDKASGR 24 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(1)PPLIGSESAYESFLSADDKASGR;S(0.999)PPLIGS(0.001)ESAYESFLSADDKASGR ; 177.38 9.06E-12 68370000 3052.4 3114.4 2856.1 2727.1 3936.2 3302.4 3127.7 3991.7 3514.2 2009.63 TRUE FALSE FALSE 2694.602299 3210.350973 3010.509405 2838.322926 3645.834368 3239.412222 3248.336437 4446.098993 3369.343189 1997.676631 1.348868108 1.607042362 1.507005367 1.420811998 1.825037301 1.621589887 1.626057183 2.225634982 1.686630927 1 10.96410735 -1.000000001 0.082787294 0.430968029 4.591209959 0.249767025 0.261697791 50.12420848 0.304069172 2.272884624 23.91333365 0.1 1.000000001 4.16024193 SSSVS(ph)PSASFR ddPTM_HeLa_CUDC101_4h_R1 3 SSSVSPSASFR 11 0 Q04727-4;Q04727;Q04727-3;H7C4W5;H7C4P7;Q5JSY7;Q04727-2 Q04727-4 TLE4 Transducin-like enhancer protein 4 1 0 S(0.004)S(0.001)S(0.104)VS(0.855)PS(0.036)ASFR;S(0.002)SS(0.053)VS(0.945)PSASFR;SSS(0.022)VS(0.974)PS(0.003)ASFR ;; 188.27 6.22E-11 112600600 7099.8 6506.9 6347.6 6149.2 7365.3 6754.3 6527.6 6593.1 6557.3 6491.4 TRUE FALSE FALSE 6267.572207 6707.369876 6690.770456 6399.990955 6821.976493 6625.472981 6779.371719 7343.631854 6287.005319 6452.788864 0.97129665 1.039452866 1.036880424 0.991817816 1.057213654 1.02676116 1.050611117 1.138055499 0.974308233 1 12.65570711 -1.000000001 0.371732064 0.989345823 2.803148378 0.712129481 0.025094508 22.96594762 0.28158332 0.007039878 30.160302 0.1 1.000000001 1.813802555 STSAPQMS(ph)PGSSDNQSS(ph)SPQPAQQK ddPTM_HeLa_CUDC101_4h_R1 3 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 0 STSAPQMS(0.993)PGS(0.003)S(0.005)DNQS(0.002)S(0.653)S(0.345)PQPAQQK;S(0.003)T(0.003)S(0.003)APQMS(0.849)PGS(0.085)S(0.088)DNQS(0.155)S(0.456)S(0.36)PQPAQQK;S(0.001)T(0.001)S(0.001)APQMS(0.585)PGS(0.329)S(0.085)DNQS(0.007)S(0.591)S(0.4)PQPAQQK ;; 152.31 8.32E-11 89217000 12036.8 10877.2 10568.7 9983.2 11601.8 10356.3 9513.8 9256.8 11311.5 11441.6 TRUE FALSE FALSE 10625.86455 11212.31364 11140.07589 10390.35805 10745.95833 10158.77083 9880.750453 10310.55669 10845.23518 11373.54485 0.934261454 0.985824014 0.97947263 0.913554936 0.944820499 0.893193016 0.868748537 0.906538535 0.953549251 1 13.47339436 -1.000000001 0.126450057 1.013570115 0.574019558 0.564513194 0.026841728 42.81523259 0.367742814 0.103887095 3.353683574 0.1 1.000000001 -0.439550556 TTSSANNPNLMYQDECDR ddPTM_HeLa_CUDC101_4h_R1 1 TTSSANNPNLMYQDECDR 18 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 0 153.32 2.64E-07 0 696.8 649.77 584.15 720.62 890.15 873.37 690.22 910.08 873.58 622.52 FALSE FALSE TRUE 615.1221603 669.7886435 615.730916 750.0099984 824.4854079 856.7119224 716.8420166 1013.679829 837.5706626 618.8172234 0.99402883 1.082369104 0.99501257 1.212005694 1.332356917 1.384434515 1.158406698 1.638092461 1.353502506 1 9.273369541 -6.014247374 1.570118148 1.000931435 1.377054722 0.385596142 0.157729269 0.142876169 0.699976453 0.015943191 0.033066141 9.68E-07 6.014247374 0.376123287 TTSSANNPNLMYQDECDRR ddPTM_HeLa_CUDC101_4h_R1 2 TTSSANNPNLMYQDECDRR 19 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 0 ; ; 75.877 0.0074359 83193000 5656.7 5124.7 5547.2 5203.8 5665.1 5056.2 4391.1 4644.6 5884.1 5521.4 FALSE FALSE TRUE 4993.630201 5282.585933 5847.098411 5416.033457 5247.196859 4959.761409 4560.466198 5173.32249 5641.554907 5488.558467 0.909825454 0.96247238 1.065324975 0.986786146 0.95602459 0.903654655 0.830904185 0.942564887 1.027875523 1 12.42221157 -5.229410133 3.558196057 0.967698933 0.88328293 0.401838249 0.049329094 0.215199962 5.757555749 0.007583732 0.020181991 5.90E-06 5.229410133 -0.084416003 QELGS(ph)PEER ddPTM_HeLa_CUDC101_4h_R1 2 QELGSPEER 9 0 Q92974-2;Q92974;V9GYM8;A0A5F9ZI21;Q92974-3;V9GYF0 Q92974-2 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 QELGS(1)PEER;QELGS(1)PEER ; 96.334 0.021179 141735000 5627.1 4992.3 4409.7 4901.7 4938 4703 3829 3992.1 4767.8 5437 TRUE FALSE FALSE 4967.499868 5146.106846 4648.101721 5101.612513 4573.733578 4613.298111 3976.685813 4446.544527 4571.269266 5404.660482 0.919114139 0.952160985 0.860017338 0.943928398 0.846257335 0.853577783 0.735788275 0.822724118 0.845801375 1 12.39998828 -1.000000001 0.143589987 1.027142367 0.102131991 0.321897352 0.059759468 23.29069788 0.219283705 0.091453069 4.463355471 0.1 1.000000001 -0.925010376 SSQDGDTPAQAS(ph)PPEEK ddPTM_HeLa_CUDC101_4h_R1 3 SSQDGDTPAQASPPEEK 17 0 E9PNX6;A0A0C4DGE6;E9PNT2;E9PIR1;A0A0G2JRG8;A0A0G2JNY3;Q6ZUM4-2;Q6ZUM4-3;Q6ZUM4 E9PNX6 ARHGAP27 Rho GTPase-activating protein 27 1 0 SSQDGDT(0.003)PAQAS(0.997)PPEEK;SSQDGDT(0.001)PAQAS(0.999)PPEEK;SSQDGDT(0.017)PAQAS(0.982)PPEEK ;; 185.2 6.03E-11 10139100 7756.08 6435.58 6744.2 6372.7 6464.45 6250.77 6138.47 5041.4 7357.02 7607.2 TRUE FALSE FALSE 6846.92406 6633.852592 7108.811852 6632.606251 5987.580402 6131.546977 6375.232844 5615.292598 7053.760522 7561.952036 0.905443995 0.877267214 0.940076295 0.877102396 0.791803541 0.810841823 0.843067083 0.742571835 0.932796253 1 12.88454298 -1.000000001 0.089050766 1.112245698 0.153617687 0.745082431 0.036980592 41.55196031 0.268585533 0.393517316 4.892256854 0.1 1.000000001 -0.958628011 SESS(ph)DFEVVPK ddPTM_HeLa_CUDC101_4h_R1 2 SESSDFEVVPK 11 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 SES(0.288)S(0.712)DFEVVPK;SES(0.225)S(0.774)DFEVVPK ; 185.25 9.96E-11 41726000 6925.5 5985.7 6210.5 5988.3 5664.4 5620.2 4977.6 4776.1 7867.1 6855.8 TRUE FALSE FALSE 6113.703388 6170.112322 6546.258416 6232.528758 5246.548497 5513.004049 5169.587699 5319.791918 7542.814808 6815.021397 0.897092325 0.905369472 0.960563149 0.914528128 0.769850627 0.808948898 0.758557809 0.780597977 1.106792535 1 12.73450247 -1.000000001 0.138739266 1.030256554 0.024756554 0.733106382 0.055453246 26.55759386 0.244087999 0.122067178 5.307663129 0.1 1.000000001 -1.005500001 SMDAMS(ph)SPTKTETVK ddPTM_HeLa_CUDC101_4h_R1 2 SMDAMSSPTKTETVK 15 1 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;H0Y390;Q9UPN3-5;H3BPE1;H3BQK9 A0A590UJG2;H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 SMDAMS(0.529)S(0.431)PT(0.038)KT(0.002)ET(0.001)VK;SMDAMS(0.499)S(0.499)PT(0.002)KTETVK ; 155.98 4.45E-07 99693000 6866.5 5989.1 5967.3 6359.7 7246.1 6942.5 6336.6 7626.8 7135.3 6554.4 TRUE FALSE FALSE 6061.619279 6173.617072 6289.910288 6619.076055 6711.569639 6810.083379 6581.004785 8495.004083 6841.179914 6515.414137 0.930350573 0.94754024 0.965389176 1.015910258 1.030106375 1.045226479 1.010066996 1.303831791 1.049999243 1 12.66964117 -1.000000001 0.89086185 0.971182356 150.7324812 0.804441115 0.043781037 230.3450918 0.501828292 0.006363874 70123.80898 0.1 1.000000001 149.7612989 SQS(ph)FALR ddPTM_HeLa_CUDC101_4h_R1 1 SQSFALR 7 0 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 S(0.079)QS(0.921)FALR 90.149 0.033259 25482000 3691.7 2637.6 3193 2871.1 3072.3 3153.3 3358.1 3594.6 2176.3 2538.3 TRUE FALSE FALSE 3258.964522 2718.86133 3365.623238 2988.195868 2845.66255 3093.156056 3487.623042 4003.794734 2086.591993 2523.202079 1.291598699 1.077544027 1.333869874 1.184287177 1.127798116 1.225885189 1.382221056 1.586791152 0.826961903 1 11.30104004 -1.000000001 0.03027208 1.19E-11 3.076669816 0.56263349 0.133791207 823.3121009 1.930543552 62.74704638 151.888864 0.1 1.000000001 3.076669816 DS(ph)FDNCSLGESSK ddPTM_HeLa_CUDC101_4h_R1 2 DSFDNCSLGESSK 13 0 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 DS(1)FDNCSLGESSK;DS(1)FDNCSLGESSK ; 196.8 1.85E-16 19570200 5247.4 3467.2 3104.9 4255.7 4787 4578.7 4896.4 6416.1 4481.1 3170.4 TRUE FALSE FALSE 4632.307727 3574.020322 3272.760286 4429.265841 4433.872547 4491.368926 5085.255788 7146.482889 4296.387161 3151.54232 1.469854204 1.134054364 1.038463061 1.405428007 1.406889738 1.425133624 1.613576869 2.267614445 1.363264943 1 11.62184232 -1.000000001 0.608271569 1.210266783 70.61722147 0.815741725 0.146525622 61.72521896 0.427905898 0.033241719 5724.167666 0.1 1.000000001 69.40695469 up ALENDFFNS(ph)PPRK ddPTM_HeLa_CUDC101_4h_R1 2 ALENDFFNSPPRK 13 1 F5H148;Q9NYV6;H3BMT1;Q9NYV6-2;Q9NYV6-3;A6NIE6 F5H148 RRN3;RRN3P2 RNA polymerase I-specific transcription initiation factor RRN3;Putative RRN3-like protein RRN3P2 1 0 ALENDFFNS(1)PPRK;ALENDFFNS(1)PPRK ; 132.65 0.0020628 98411000 3336.8 2902.1 2775.8 2883.2 3032.7 2901.5 2498 2556.1 3344.5 3191.9 TRUE FALSE FALSE 2945.665362 2991.510261 2925.868144 3000.789358 2808.983763 2846.158722 2594.348697 2847.076092 3206.638294 3172.914437 0.928378442 0.942827271 0.922139 0.945751743 0.885300823 0.897017168 0.817654793 0.897306293 1.010628669 1 11.6315929 -1.000000001 0.060420544 1.143674856 0.432483289 0.75894367 0.026152612 105.8037108 0.482310949 1.165533011 6.651548766 0.1 1.000000001 -0.711191567 GPSTPKS(ph)PGASNFSTLPK ddPTM_HeLa_CUDC101_4h_R1 1 GPSTPKSPGASNFSTLPK 18 1 Q9Y4E8 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 0 GPS(0.165)T(0.139)PKS(0.683)PGAS(0.013)NFSTLPK 81.48 0.0047605 38441000 1922.4 2319.1 2646.4 2363.2 3561.7 2878.3 2723 3677.6 2283.3 2871.6 TRUE FALSE FALSE 1697.059186 2390.548722 2789.472389 2459.581511 3298.960487 2823.401223 2828.027022 4096.243119 2189.181408 2854.519595 0.594516566 0.83746096 0.977212556 0.86164464 1.155697264 0.989098561 0.990719078 1.435002627 0.766917632 1 11.47903225 -1.000000001 0.457148222 0.820043859 14.16306967 0.602245361 0.13572817 51.62078617 0.548675387 0.038060406 651.0891291 0.1 1.000000001 13.34302581 RLKEDILENEDEQNS(ph)PPKK ddPTM_HeLa_CUDC101_4h_R1 2 RLKEDILENEDEQNSPPKK 19 3 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 RLKEDILENEDEQNS(1)PPKK;RLKEDILENEDEQNS(1)PPKK ; 56.121 0.027288 50364000 5129.8 4351.9 4735.9 4544.4 5060.9 4460.1 5278.1 4318.8 4606.5 4194.6 TRUE FALSE FALSE 4528.49262 4485.976881 4991.937079 4729.740275 4687.56749 4375.031024 5481.678085 4810.434735 4416.61812 4169.650333 1.086060523 1.075864047 1.197207603 1.134325398 1.124211173 1.049256095 1.314661338 1.153678211 1.059229856 1 12.02571069 -1.000000001 0.039199913 0.563594873 2.032393609 0.376459568 0.066726596 400.1556018 1.207645456 12.68244718 39.70556265 0.1 1.000000001 1.468798736 AGAGK(ac)IGR ddPTM_HeLa_CUDC101_4h_R1 1 AGAGKIGR 8 1 A0A669KBF4;O00327-4;O00327-9;O00327-1;O00327-7;O00327-8;O00327 A0A669KBF4 ARNTL Aryl hydrocarbon receptor nuclear translocator-like protein 1 0 1 AGAGK(1)IGR 107.32 0.0065319 2847700 817.54 597.89 877.25 1063.3 1230 891.14 968.69 1542.1 574.2 495.2 FALSE TRUE FALSE 721.7092005 616.3102822 924.6767885 1106.66597 1139.265351 874.1429892 1006.052698 1717.646431 550.531233 492.2545284 1.46613014 1.252015465 1.878452579 2.248158028 2.314382672 1.775794714 2.043765247 3.489346124 1.118387341 1 8.943260668 -1 0.177815651 0.89135723 9.530478337 0.738641549 0.356671981 21.61607806 0.233079106 0.473427814 50.58543626 0.1 1 8.639121107 RAS(ph)SLNVLNVGGK ddPTM_HeLa_CUDC101_4h_R1 1 RASSLNVLNVGGK 13 1 Q07866-6;Q07866-4;G3V5R9;Q07866-9;Q07866-7;H0YG16;H0YJK1 Q07866-6 KLC1 Kinesin light chain 1 1 0 RAS(0.5)S(0.5)LNVLNVGGK 128.45 0.00070493 61466000 5463.2 5193.4 5206.6 4987.8 6048.6 5496.8 5329.2 5506.4 5298.6 5470.7 TRUE FALSE FALSE 4822.811978 5353.402498 5488.084545 5191.224043 5602.406829 5391.957698 5534.749029 6133.226318 5080.189465 5438.160033 0.886846277 0.984414299 1.009180405 0.954591996 1.030202641 0.99150405 1.017761338 1.127812768 0.934174323 1 12.40890289 -1.000000001 0.478865718 0.952213861 5.530908771 0.62450262 0.037151982 52.53576744 0.531548894 0.010025934 240.9947131 0.1 1.000000001 4.578694909 LPSRPPLPGSGGSQSGAK(ac)MR ddPTM_HeLa_CUDC101_4h_R1 2 LPSRPPLPGSGGSQSGAKMR 20 2 Q9Y570-4;Q9Y570 Q9Y570-4 PPME1 Protein phosphatase methylesterase 1 0 1 ; LPSRPPLPGSGGSQSGAK(1)MR;LPSRPPLPGSGGSQSGAK(1)MR 125.96 0.0016864 9836300 396.5 320.2 395.1 529.25 595.86 648.52 700.36 1102.84 204.612 388.1 FALSE TRUE FALSE 350.0228711 330.0649825 416.4603011 550.8351026 551.9045949 636.1505615 727.3731198 1228.382848 196.1778068 385.7915639 0.907284927 0.855552618 1.079495614 1.427804945 1.430577147 1.648948865 1.88540442 3.184058343 0.508507249 1 8.591677786 -1 0.487847724 0.949124182 64.64044668 0.92456961 0.195719003 12.13166276 0.120107027 0.028666096 792.2024417 0.1 1 63.69132249 up TTYLVLDEADR ddPTM_HeLa_CUDC101_4h_R1 2 TTYLVLDEADR 11 0 P17844-2;P17844;J3KTA4;J3QSF1;J3KRZ1 P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 0 0 ; ; 169.93 1.42E-06 40312000 2349.08 2239.23 1644.51 1515.21 2264.68 2031.04 1950.24 1984.04 1902.68 2332.8 FALSE FALSE TRUE 2073.724403 2308.218022 1733.417185 1577.006813 2097.619068 1992.301296 2025.46141 2209.895094 1824.250725 2318.924402 0.894261323 0.995383041 0.74750914 0.680059605 0.904565525 0.859148877 0.873448659 0.952982811 0.786679688 1 11.17924007 -8.215748358 0.646450475 0.990822853 0.849186326 0 0.106376522 0.67174399 0.61853781 0.041914294 0.0235427 6.08E-09 8.215748358 -0.141636527 DPLGGLADMFGQMPGSGIGTGPGVIQDRFS(ph)PTMGR ddPTM_HeLa_CUDC101_4h_R1 1 DPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGR 35 1 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 DPLGGLADMFGQMPGS(0.001)GIGT(0.015)GPGVIQDRFS(0.784)PT(0.2)MGR 69.674 1.40E-05 8372800 670.31 649.12 635.12 394.39 695.03 721.62 681.34 558.74 675.67 551.82 TRUE FALSE FALSE 591.7372779 669.1186178 669.4565083 410.4749289 643.7590216 707.8563008 707.619512 622.3447031 647.8185966 548.5377501 1.078753974 1.219822369 1.220438353 0.74830753 1.1735911 1.290442273 1.2900106 1.134552185 1.180991821 1 9.099447099 -1.000000001 0.126738137 0.956415672 1.882693001 0.012673512 0.153031481 106.9264258 0.919965539 0.544316848 17.69632582 0.1 1.000000001 0.926277329 GGAAPEGPNEAEVTSGKPEQEVPDAEEEKSVS(ph)GTDVQEECR ddPTM_HeLa_CUDC101_4h_R1 2 GGAAPEGPNEAEVTSGKPEQEVPDAEEEKSVSGTDVQEECR 41 2 P49321;P49321-3;P49321-4;E9PPR5 P49321 NASP Nuclear autoantigenic sperm protein 1 0 GGAAPEGPNEAEVT(0.055)S(0.045)GKPEQEVPDAEEEKS(0.342)VS(0.423)GT(0.136)DVQEECR;GGAAPEGPNEAEVT(0.001)S(0.001)GKPEQEVPDAEEEKS(0.339)VS(0.431)GT(0.229)DVQEECR ; 70.808 9.21E-08 173265000 3659.87 2162.37 2813.19 2665.34 3254.85 3043.27 2979.53 3873.3 2416.15 2084.13 TRUE FALSE FALSE 3230.865587 2228.990057 2965.279561 2774.044086 3014.7462 2985.224695 3094.45147 4314.220816 2316.555274 2071.733502 1.559498644 1.075905783 1.431303572 1.338996586 1.455180503 1.44093084 1.493653246 2.082420742 1.118172425 1 11.01662272 -1.000000001 0.042563371 8.03E-10 3.903932959 0.545498028 0.196989961 428.3123878 1.399783766 34.24348571 118.0414127 0.1 1.000000001 3.903932958 AASSSSPGS(ph)PVASSPSR ddPTM_HeLa_CUDC101_4h_R1 1 AASSSSPGSPVASSPSR 17 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 AAS(0.017)S(0.18)S(0.18)S(0.029)PGS(0.593)PVASSPSR 249.36 5.13E-56 31598000 1915.6 1487.8 1436.5 1362.7 2220.2 1888.7 1858.9 2251.9 1620.7 1480.4 TRUE FALSE FALSE 1691.056272 1533.637355 1514.161535 1418.276796 2056.420269 1852.676194 1930.598396 2508.247194 1553.89406 1471.594515 1.149131948 1.042160282 1.028925781 0.963768743 1.397409577 1.258958344 1.311909209 1.704441793 1.055925423 1 10.52316449 -1 0.469442301 1.05653775 17.21754152 0.787910428 0.101107298 28.81514706 0.29801804 0.021935251 455.1191341 0.1 1 16.16100377 GAILSEEELAAMS(ph)PTAAAVAK ddPTM_HeLa_CUDC101_4h_R1 6 GAILSEEELAAMSPTAAAVAK 21 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 0 GAILSEEELAAMS(0.965)PT(0.035)AAAVAK;GAILSEEELAAMS(0.982)PT(0.018)AAAVAK;GAILSEEELAAMS(0.95)PT(0.05)AAAVAK;GAILSEEELAAMS(0.999)PT(0.001)AAAVAK;GAILSEEELAAMS(0.787)PT(0.213)AAAVAK;GAILSEEELAAMS(0.997)PT(0.003)AAAVAK ;;;;; 253.09 1.07E-88 84291000 19535.3 17278.2 16196 16086.6 18859.3 17545 16150.2 13583.1 19009.9 18720.5 TRUE FALSE FALSE 17245.40175 17810.52086 17071.60475 16742.68108 17468.08701 17210.35836 16773.11862 15129.3452 18226.30388 18609.14963 0.926716271 0.95708408 0.91737694 0.899701567 0.93868271 0.924833144 0.901337189 0.813005726 0.979427015 1 14.18372451 -1 0.048925399 1.176449306 0.453188749 0.683678528 0.027323061 202.665962 0.757067531 2.718325526 11.2300523 0.1 1 -0.723260556 EES(ph)EDELEEANGNNPIDIEVDQNK ddPTM_HeLa_CUDC101_4h_R1 1 EESEDELEEANGNNPIDIEVDQNK 24 0 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 0 EES(1)EDELEEANGNNPIDIEVDQNK 166.62 6.73E-10 4338900 1041.1 920.33 914.41 1082.9 886.32 1047.9 1083.4 1017.5 1066 861.63 TRUE FALSE FALSE 919.0638362 948.6842764 963.8457705 1127.065343 820.9379394 1027.913053 1125.187101 1133.328087 1022.059029 856.5049864 1.07303968 1.107622596 1.125324179 1.315888828 0.958474209 1.200125008 1.313695914 1.323200805 1.193290226 1 9.742317835 -1 0.184051782 0.985497792 2.487419778 0.268046683 0.106509294 30.10095365 0.33086341 0.104477998 12.80534985 0.1 1 1.501921985 EGVTPWAS(ph)FKK ddPTM_HeLa_CUDC101_4h_R1 2 EGVTPWASFKK 11 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 EGVT(0.068)PWAS(0.932)FKK;EGVT(0.078)PWAS(0.922)FKK ; 119.21 0.0090261 114188000 5612.4 4191.3 4806.7 4607.2 4400.4 5891.4 5315.3 5348.8 3326.2 4313.5 TRUE FALSE FALSE 4954.52298 4320.428985 5066.564741 4795.10153 4075.791259 5779.031361 5520.312902 5957.685771 3189.092628 4287.84311 1.155481405 1.007599596 1.181611503 1.118301535 0.9505458 1.347771178 1.287433509 1.389436511 0.743752172 1 12.0660364 -1 0.369423474 1.058923025 5.873046807 0.479693326 0.135878136 30.84215993 0.37912874 0.025871212 106.6264343 0.1 1 4.814123782 TVALK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 TVALKR 6 1 Q01658 Q01658 DR1 Protein Dr1 0 1 TVALK(1)R 111.28 0.011258 9039000 2435 2164.3 2125.4 3502.9 4035.5 3610.1 3113.9 3974.8 981.78 565.39 FALSE TRUE FALSE 2149.572991 2230.979518 2240.305553 3645.763403 3737.809205 3541.243357 3234.004166 4427.275165 941.3106129 562.0270351 3.824678987 3.969523489 3.98611706 6.486811443 6.650586131 6.300841661 5.754179005 7.877334876 1.674849347 1 9.13449572 -7.168343361 0.233179194 1.56E-17 8.435265075 0.901637739 0.668183691 0.45880949 0.097464912 1.267189457 1.522711419 6.79E-08 7.168343361 8.435265075 RTSS(ph)EDNLYLAVLR ddPTM_HeLa_CUDC101_4h_R1 3 RTSSEDNLYLAVLR 14 1 Q15149-4 Q15149-4 PLEC Plectin 1 0 RT(0.011)S(0.234)S(0.755)EDNLYLAVLR;RTS(0.001)S(0.999)EDNLYLAVLR;RT(0.081)S(0.01)S(0.909)EDNLYLAVLR ;; 232.01 1.47E-43 240947000 5848.4 5152.5 5236.3 5136.7 6845 6032.3 5953.8 6335 5678.5 4428.29 TRUE FALSE FALSE 5162.859418 5311.242418 5519.390217 5346.196829 6340.057987 5917.243928 6183.44006 7056.150793 5444.429827 4401.950334 1.172857262 1.20656573 1.253851088 1.214506394 1.440283853 1.344232324 1.40470464 1.60296011 1.236822184 1 12.10392715 -1 0.13155502 0.901109018 3.080754168 0.694647377 0.087579629 14.97688191 0.132469578 0.166590247 6.091746449 0.1 1 2.17964515 TVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRK ddPTM_HeLa_CUDC101_4h_R1 1 TVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRK 34 1 Q92973-3;Q92973-2;Q92973 Q92973-3 TNPO1 Transportin-1 0 0 40.872 0.035288 12288000 240.38 393.45 302.83 329.95 343.73 378.52 305.68 214.41 178.5 248 FALSE FALSE TRUE 212.2030208 405.5717281 319.2019058 343.4067872 318.3737227 371.3003617 317.47018 238.8175677 171.1421544 246.524885 0.860777283 1.645155329 1.294806023 1.392990356 1.291446593 1.50613745 1.287781475 0.968736149 0.694218575 1 7.945589474 -7.283321302 24.95078056 0.934255925 1.343627783 0.589506814 0.183268468 399.3400014 455344.7821 0.027959682 0.031987127 5.21E-08 7.283321302 0.409371858 S(ph)FLNYYADLETSAR ddPTM_HeLa_CUDC101_4h_R1 2 SFLNYYADLETSAR 14 0 H0YAJ5;G5E9Y1;Q92870-2;Q92870;Q92870-4 H0YAJ5 APBB2 Amyloid beta A4 precursor protein-binding family B member 2 1 0 S(1)FLNYYADLETSAR;S(1)FLNYYADLETSAR ; 214.81 4.23E-24 10592800 865.82 815.2 681.4 860.43 914.81 833.02 1086.19 907.84 822.1 708.98 TRUE FALSE FALSE 764.3298921 840.3153458 718.2385451 895.5220545 847.3262889 817.1315314 1128.084712 1011.184836 788.21269 704.7629554 1.084520527 1.192337564 1.019120741 1.270671291 1.202285509 1.159441661 1.600658354 1.434787155 1.118408231 1 9.460994283 -1 0.255499929 1.004951136 4.571257964 0.643701083 0.105837881 16.45710856 0.206451634 0.048306977 25.71888691 0.1 1 3.566306827 RS(ph)SPETGTTGDVAWQISPK ddPTM_HeLa_CUDC101_4h_R1 2 RSSPETGTTGDVAWQISPK 19 1 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3;H7BZH9 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 RS(0.623)S(0.374)PET(0.001)GT(0.001)T(0.001)GDVAWQISPK;RS(0.634)S(0.366)PETGTTGDVAWQISPK ; 163.85 4.78E-13 7090200 1621.3 1867.59 1373 1489.75 1738.09 1659.55 1469.36 1635.04 1629.65 1528.57 TRUE FALSE FALSE 1431.253672 1925.128234 1447.228533 1550.508444 1609.874563 1627.896849 1526.033707 1821.166345 1562.475137 1519.477998 0.94193774 1.266966838 0.952451128 1.020421781 1.059491856 1.071352696 1.004314449 1.198547361 1.02829731 1 10.56936007 -1 0.216558436 0.972347301 1.7890583 0.062860475 0.095156653 62.06410207 0.737733329 0.072769637 17.78983708 0.1 1 0.816710999 TVAVWDSETGER ddPTM_HeLa_CUDC101_4h_R1 1 TVAVWDSETGER 12 0 Q96DI7;Q96DI7-2 Q96DI7 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein 0 0 115.23 0.024584 7642100 746.06 989.65 793.11 803.18 969.15 873.47 698.69 656.04 942.5 825.97 FALSE FALSE TRUE 658.6079778 1020.139943 835.9879256 835.937152 897.6577353 856.8100151 725.6387073 730.7209418 903.6497511 821.0570937 0.802146383 1.242471384 1.018184889 1.018123049 1.093295146 1.043544988 0.88378593 0.889975798 1.100593074 1 9.681338736 TVCDAAEK(ac)GVR ddPTM_HeLa_CUDC101_4h_R1 1 TVCDAAEKGVR 11 1 O60664-4;O60664-3;O60664;K7ER39;K7EL96 O60664-4 PLIN3 Perilipin-3 0 1 TVCDAAEK(1)GVR 153.12 0.00012478 11472000 914.06 872.64 1015.4 881.99 1022 801.77 701.48 848.94 803.85 501.01 FALSE TRUE FALSE 806.9152724 899.5250041 1070.295595 917.9613645 946.6090961 786.4775731 728.5363186 945.5798981 770.7149628 498.0299702 1.620214286 1.806166411 2.14905861 1.843184988 1.900707091 1.579177198 1.462836299 1.898640553 1.547527275 1 8.960088753 -8.593220798 0.72442968 1.024919891 1.795262643 0.357290651 0.240496993 0.273864629 0.290963995 0.106548212 0.045882659 2.55E-09 8.593220798 0.770342752 LVRLS(ph)SDSFAR ddPTM_HeLa_CUDC101_4h_R1 1 LVRLSSDSFAR 11 1 A0A087WSV0;Q9HB09-3;Q9HB09 A0A087WSV0 BCL2L12 Bcl-2-like protein 12 1 0 LVRLS(0.81)S(0.188)DS(0.002)FAR 87.083 0.016286 6242900 1288.5 1244.6 1406 1060.9 1470.1 1169.7 1347.4 1359.7 1310.6 1233.8 TRUE FALSE FALSE 1137.463983 1282.944651 1482.012613 1104.168088 1361.653652 1147.389921 1399.369669 1514.482752 1256.576513 1226.461303 0.927435689 1.046053918 1.208364756 0.900287751 1.110229608 0.935528841 1.14098151 1.23483941 1.024554554 1 10.260286 -1 0.529199725 0.98233055 10.82870928 0.288474206 0.094222624 81.96594105 0.727324455 0.017511204 914.1845287 0.1 1 9.846378728 TVDGPSGK(ac)LWR ddPTM_HeLa_CUDC101_4h_R1 1 TVDGPSGKLWR 11 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 TVDGPSGK(1)LWR 213.8 1.59E-13 93386000 5741.8 4364.2 4392.9 4604.5 4606.8 4427.5 3891 4711.3 4720.1 3941.5 FALSE TRUE FALSE 5068.754908 4498.655829 4630.393462 4792.291412 4266.965542 4343.052814 4041.077173 5247.615348 4525.53548 3918.055783 1.293691358 1.148185753 1.181808968 1.22312996 1.089051759 1.108471409 1.031398581 1.339341663 1.155046209 1 11.93592222 -9.5887357 1.393608119 1.000482003 1.184783629 0.056736193 0.09923539 0.376597194 1.317357398 0.064230514 0.015099216 2.58E-10 9.5887357 0.184301627 LTGS(ph)TSSLNK ddPTM_HeLa_CUDC101_4h_R1 2 LTGSTSSLNK 10 0 Q9NV70-2;Q9NV70 Q9NV70-2 EXOC1 Exocyst complex component 1 1 0 LTGS(0.59)T(0.222)S(0.094)S(0.094)LNK;LT(0.029)GS(0.959)T(0.007)S(0.003)S(0.002)LNK ; 132.03 0.002067 67585000 4562.2 4434.8 4293.6 3955.5 5105.1 4258.2 4190.4 4805 3917.2 3785.2 TRUE FALSE FALSE 4027.425832 4571.430931 4525.725003 4116.822387 4728.506944 4176.98193 4352.025132 5351.981778 3755.731358 3762.685462 1.070359421 1.214938367 1.202791211 1.094118131 1.256684087 1.110106591 1.156627408 1.422383516 0.998151824 1 11.87754698 -1 0.100596546 0.879048299 2.075174502 0.568716383 0.080208413 64.43721113 0.461767158 0.635545317 10.69068516 0.1 1 1.196126203 TVDLK(ac)PDWGK ddPTM_HeLa_CUDC101_4h_R1 2 TVDLKPDWGK 10 1 P31948;P31948-2;P31948-3;F5GXD8;F5H783 P31948 STIP1 Stress-induced-phosphoprotein 1 0 1 ; TVDLK(1)PDWGK;TVDLK(1)PDWGK 135.55 0.0013766 2999900 3872.9 1583.83 1449.3 1252.44 3157.3 2933.5 3492.3 2298.7 2826.3 1967.87 FALSE TRUE FALSE 3418.924533 1632.625925 1527.653542 1303.519917 2924.392269 2877.548375 3626.999181 2560.374716 2709.798718 1956.165022 1.747768974 0.834605418 0.780943082 0.666365006 1.494961947 1.471015146 1.854137632 1.308874603 1.385260797 1 10.93381237 -5.547809276 24.95825657 1.221649149 1.560183566 0.244526085 0.340966354 358.7640051 359161.8821 0.062261833 0.124527133 2.83E-06 5.547809276 0.338534416 ALAAGADS(ph)PKTEEARPSPAPGPGTPTGTPTR ddPTM_HeLa_CUDC101_4h_R1 4 ALAAGADSPKTEEARPSPAPGPGTPTGTPTR 31 2 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 0 ALAAGADS(0.918)PKT(0.071)EEARPS(0.01)PAPGPGT(0.001)PTGTPTR;ALAAGADS(0.938)PKT(0.06)EEARPS(0.002)PAPGPGTPTGTPTR;ALAAGADS(0.609)PKT(0.209)EEARPS(0.163)PAPGPGT(0.01)PT(0.003)GT(0.003)PT(0.003)R;ALAAGADS(0.58)PKT(0.357)EEARPS(0.055)PAPGPGT(0.004)PT(0.001)GT(0.001)PT(0.001)R ;;; 64.701 0.00026044 340110000 3568.63 3512.09 3681.98 3144.85 4210.18 3618.13 3550.3 3966.15 3740.49 3669.59 TRUE FALSE FALSE 3150.320601 3620.29333 3881.038976 3273.110576 3899.603409 3549.120198 3687.23626 4417.640484 3586.305419 3647.763115 0.863630806 0.992469416 1.063950386 0.897292525 1.069039651 0.972957971 1.010821192 1.21105465 0.98315195 1 11.83279633 -1 0.667874928 0.948442112 25.60626682 0.497530754 0.064703808 140.2451488 0.785529915 0.012299047 5142.268252 0.1 1 24.65782471 TVDVAAEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TVDVAAEKK 9 1 F8VZQ9;P82979;H0YHG0 F8VZQ9 SARNP SAP domain-containing ribonucleoprotein 0 1 ; TVDVAAEK(1)K;TVDVAAEK(1)K 140.45 0.0014867 16092600 10666.6 10645.9 10099.3 9767.5 9916.9 9407.6 9181.1 8241 11050.5 12581.6 FALSE TRUE FALSE 9416.277318 10973.88756 10645.29871 10165.86087 9185.350044 9228.165704 9535.218102 9179.122129 10594.99371 12506.76408 0.752894774 0.877436201 0.851163309 0.812829026 0.734430584 0.737853984 0.762404891 0.73393262 0.847141086 1 13.61042094 -13.52287875 0.230993098 2.256222952 0.749325226 0.351526457 0.065395204 17.44683182 0.225082901 9.936904082 0.03577932 3.00E-14 13.52287875 -1.506897726 GNKSPSPPDGS(ph)PAATPEIR ddPTM_HeLa_CUDC101_4h_R1 1 GNKSPSPPDGSPAATPEIR 19 1 O00499-6;O00499-11;O00499-2;O00499;O00499-9;O00499-10;O00499-7;O00499-8;O00499-4;O00499-3;O00499-5 O00499-6 BIN1 Myc box-dependent-interacting protein 1 1 0 GNKS(0.002)PS(0.026)PPDGS(0.972)PAATPEIR 133.88 0.00021889 74161000 2709.2 1967.2 2613.3 2289.1 2365.9 2634.6 2326.2 2443.4 2701.7 2168.1 TRUE FALSE FALSE 2391.631683 2027.8071 2754.582903 2382.459392 2191.372271 2584.349395 2415.922313 2721.546779 2590.334782 2155.204045 1.109700814 0.940888685 1.278107708 1.105444934 1.01678181 1.19912052 1.120971501 1.262779172 1.201897699 1 11.07360875 -1 0.071308417 0.869636127 1.702474701 0.011855012 0.106914076 206.4585435 1.09609884 2.24464109 17.3044021 0.1 1 0.832838573 TVECEEGSEDDESLR ddPTM_HeLa_CUDC101_4h_R1 1 TVECEEGSEDDESLR 15 0 G5E9W3;Q9UKF6 G5E9W3 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 0 0 187.78 3.66E-23 0 378.86 196.19 206.56 351.48 300.36 272.41 318.92 179.85 292.33 314.55 FALSE FALSE TRUE 334.4506051 202.2343814 217.7272584 365.8148736 278.2030412 267.2142331 331.2208512 200.323397 280.2800337 312.6790426 1.069629107 0.646779457 0.696328275 1.169937296 0.889739967 0.854595917 1.059299813 0.640667809 0.896382538 1 8.288538715 VPS(ph)SDEEVVEEPQSR ddPTM_HeLa_CUDC101_4h_R1 2 VPSSDEEVVEEPQSR 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 VPS(0.643)S(0.357)DEEVVEEPQSR;VPS(0.97)S(0.029)DEEVVEEPQS(0.001)R ; 219.95 2.08E-32 49123000 240.349 334.76 426.53 272.26 118.67 258.17 204.343 483.87 389.66 183.274 TRUE FALSE FALSE 212.1756546 345.0735588 449.589502 283.3639396 109.9159505 253.2458374 212.224578 538.9518049 373.5980499 182.1838781 1.164623658 1.894094924 2.467778745 1.5553733 0.603324244 1.390056244 1.164892197 2.958284841 2.050664712 1 7.509251487 -1 0.060079056 7.55E-10 4.588718088 0 0.718423888 439.4859022 1.992858342 31.40503311 177.5272207 0.1 1 4.588718087 LQDSSDPDTGSEEEGSSRLS(ph)PPHS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 LQDSSDPDTGSEEEGSSRLSPPHSPR 26 1 Q92974-2;Q92974;V9GYM8;A0A5F9ZI21;Q92974-3;V9GYF0 Q92974-2 ARHGEF2 Rho guanine nucleotide exchange factor 2 2 0 LQDS(0.001)SDPDT(0.001)GS(0.002)EEEGS(0.018)S(0.047)RLS(0.939)PPHS(0.991)PR 73.247 0.00031375 21353000 2316.1 2282.8 2074.3 1938.6 2503.3 2384.3 2276.1 2651.8 1965.8 2158 TRUE FALSE FALSE 2044.610269 2353.130362 2186.442932 2017.664487 2318.636546 2338.82345 2363.889939 2953.670193 1884.768892 2145.16412 0.953125334 1.096946541 1.019242729 0.940564159 1.080866739 1.090277163 1.101962278 1.376897071 0.878612911 1 11.06687231 -1 0.641839653 0.987863159 32.58347888 0.784827715 0.060190703 54.21894049 0.334209088 0.008568146 2434.924449 0.1 1 31.59561573 LSS(ph)STVAISYSPDR ddPTM_HeLa_CUDC101_4h_R1 1 LSSSTVAISYSPDR 14 0 Q96T17;Q96T17-2;Q96T17-5 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 LSS(0.333)S(0.333)T(0.333)VAISYSPDR 206.67 1.41E-23 16085000 1478.8 1270.8 1575.3 1609.6 1945 2483.3 2380.5 3392.8 1499.1 1262.9 TRUE FALSE FALSE 1305.457306 1309.951842 1660.465483 1675.246445 1801.521225 2435.93519 2472.316682 3779.022638 1437.306463 1255.388215 1.039883353 1.043463549 1.322670919 1.334444936 1.435031175 1.940383988 1.96936426 3.010242245 1.144909954 1 10.29391785 -1 0.398301579 0.995850751 32.8656963 0.961011706 0.117623759 6.272978142 0.074274826 0.023806128 158.4165695 0.1 1 31.86984555 up RGPNYTSGYGTNSELS(ph)NPSETESER ddPTM_HeLa_CUDC101_4h_R1 2 RGPNYTSGYGTNSELSNPSETESER 25 1 B4DXZ6;P51114-3;P51114;E7EU85;E9PFF5;P51114-2 B4DXZ6 FXR1 Fragile X mental retardation syndrome-related protein 1 1 0 RGPNYTSGYGTNSELS(0.888)NPS(0.093)ET(0.012)ES(0.006)ER;RGPNYTSGYGTNSELS(0.786)NPS(0.205)ET(0.008)ES(0.001)ER ; 116.34 2.71E-08 62194000 2540 2238.2 2257.46 2057.8 2972.6 2586.1 2129.25 2904.8 2495.1 1814.72 TRUE FALSE FALSE 2242.26505 2307.156289 2379.505116 2141.725979 2753.31722 2536.774451 2211.375886 3235.47069 2392.250922 1803.925965 1.242991727 1.278963956 1.319070274 1.187258247 1.526291696 1.406251975 1.225868428 1.793571773 1.326135866 1 10.81692441 -1 0.068951397 0.56704048 3.062681281 0.324708574 0.166326488 109.5590937 0.564133887 3.703994465 26.76754415 0.1 1 2.495640801 TVEIVHIDIADR ddPTM_HeLa_CUDC101_4h_R1 1 TVEIVHIDIADR 12 0 A0A0A0MSW4;P48739;P48739-2;P48739-3;B3KYB6;B3KYB7 A0A0A0MSW4 PITPNB Phosphatidylinositol transfer protein beta isoform 0 0 99.011 0.011509 3608400 4543.2 3624.2 3322.8 3657.5 4951.1 4200 3777.4 3476.5 4051.1 3597.3 FALSE FALSE TRUE 4010.652983 3735.857306 3502.440619 3806.668659 4585.867217 4119.891998 3923.095583 3872.250708 3884.111943 3575.9031 1.121577647 1.044731136 0.979456244 1.064533505 1.282436098 1.152126297 1.097092252 1.082873501 1.086190491 1 11.80409193 -5.967385352 24.99990083 1.051079972 1.152485837 0.403417596 0.062276502 176.8361247 135548.3499 0.010459829 0.018959972 1.08E-06 5.967385352 0.101405865 TVESLEETLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 TVESLEETLKK 11 1 F2Z3J9;Q14914-2;Q14914 F2Z3J9 PTGR1 Prostaglandin reductase 1 0 1 TVESLEETLK(1)K 169.93 0.00028341 406690 146.54 0 0 0 136.86 151.36 99.407 0 52.141 0 FALSE TRUE FALSE 129.3628033 0 0 0 126.7641105 148.4730602 103.2411613 0 49.99172591 0 0 GEGDAPFSEPGTTSTQRPS(ph)SPETATK ddPTM_HeLa_CUDC101_4h_R1 2 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 GEGDAPFS(0.006)EPGT(0.154)T(0.154)S(0.154)T(0.154)QRPS(0.183)S(0.183)PET(0.01)AT(0.002)K;GEGDAPFSEPGT(0.012)T(0.012)S(0.036)T(0.168)QRPS(0.383)S(0.383)PET(0.005)AT(0.001)K ; 89.462 7.96E-06 215880000 6645 5729.3 5528.1 5524 5491.5 6150.1 4986 4732.7 6422.1 6277.6 TRUE FALSE FALSE 5866.083173 5905.812942 5826.965808 5749.292597 5086.402986 6032.797089 5178.31169 5271.451438 6157.37832 6240.260556 0.94003818 0.946404864 0.933769633 0.921322523 0.815094649 0.966754038 0.829822993 0.844748611 0.986718145 1 12.60739055 -1 0.104955737 1.053152537 0.418393943 0.595386767 0.039776697 52.56421926 0.390065289 0.257029896 4.837718099 0.1 1 -0.634758593 ETQPWS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 ETQPWSSPK 9 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 0 ETQPWS(0.97)S(0.03)PK 128.81 0.000626 0 2772.6 2246.7 2137.5 2295.5 2348.5 2467.4 2199.8 1772.7 2278.7 2584.6 TRUE FALSE FALSE 2447.600031 2315.918164 2253.059716 2389.120412 2175.255834 2420.338456 2284.647023 1974.497002 2184.771022 2569.226684 0.952660209 0.901406707 0.876940805 0.929898645 0.846657808 0.9420494 0.889235285 0.768518019 0.85036133 1 11.32711847 -1 0.096676052 1.075684586 0.372426344 0.004695474 0.061904912 58.29779669 0.404130632 0.35942952 5.460384547 0.1 1 -0.703258242 NSQSENS(ph)SLNNMPLR ddPTM_HeLa_CUDC101_4h_R1 2 NSQSENSSLNNMPLR 15 0 H7C3M7 H7C3M7 FARP2 1 0 NSQS(0.074)ENS(0.463)S(0.463)LNNMPLR;NS(0.002)QS(0.031)ENS(0.483)S(0.483)LNNMPLR ; 104.16 0.0015938 4535700 2354.6 2341.5 2286.27 2032.93 2587 2657.8 2319.5 2704.2 2396.8 1882.96 TRUE FALSE FALSE 2078.597357 2413.63884 2409.872672 2115.841672 2396.162164 2607.106893 2408.963892 3012.035197 2298.00289 1871.76007 1.110504167 1.289502259 1.28749016 1.130402185 1.280165232 1.392863826 1.287004638 1.609199408 1.227723 1 10.8701798 -1 0.145356759 0.923738095 3.006512458 0.523565611 0.10916293 22.86504337 0.217100385 0.196787628 10.01394218 0.1 1 2.082774363 TVGK(ac)K(ac)QPK ddPTM_HeLa_CUDC101_4h_R1 1 TVGKKQPK 8 2 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 0 2 TVGK(1)K(1)QPK 122.13 0.0057298 4293100 2882.9 2231.6 1791.2 5565.1 4094 4998.6 4255.3 3472.2 374.05 191.4 FALSE TRUE FALSE 2544.970832 2300.352951 1888.03769 5792.068832 3791.993776 4903.260033 4419.428346 3867.461213 358.6315007 190.2615443 13.37617037 12.09047766 9.923380456 30.44266698 19.93042677 25.7711565 23.22817447 20.3270778 1.884939503 1 7.571840183 -7.551725164 0.336658775 1.51E-12 25.84562821 0.752430247 4.650034827 0.463161232 0.161617631 4.398712257 3.848070755 2.81E-08 7.551725164 25.84562821 S(ph)GELMIK ddPTM_HeLa_CUDC101_4h_R1 1 SGELMIK 7 0 Q9BQS8;Q9BQS8-4;C9J2W6;H7BZ74 Q9BQS8 FYCO1 FYVE and coiled-coil domain-containing protein 1 1 0 S(1)GELMIK 85.862 0.038147 7113000 2444.4 2031.8 2038.1 2022.4 2438.9 2445.1 2656.1 3709.6 2280.8 1804.2 TRUE FALSE FALSE 2157.871137 2094.39735 2148.285851 2104.882214 2258.987206 2398.463791 2758.546667 4131.885869 2186.784459 1793.468538 1.203183157 1.16779152 1.197838604 1.173637657 1.259563331 1.337332515 1.538107086 2.303851883 1.219304611 1 10.80853672 -1 0.680599216 1.110902056 131.3738542 0.959210253 0.069996504 36.62281019 0.195485437 0.014351287 7246.148562 0.1 1 130.2629522 up SFYPEEVSSMVLT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 SFYPEEVSSMVLTK 14 0 P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 0 SFYPEEVS(0.198)S(0.12)MVLT(0.682)K 118.33 0.0075466 6467100 949.62 980.66 987.43 735.75 920.55 1026.5 822.57 977.78 622.37 835.11 TRUE FALSE FALSE 838.3069831 1010.872972 1040.813453 765.7570652 852.6428605 1006.921223 854.2968004 1089.086523 596.7156452 830.1427286 1.00983476 1.217709844 1.253776509 0.922440249 1.027103932 1.212949518 1.029096288 1.311926835 0.718810904 1 9.697215594 -1 0.132903225 0.951842254 1.761580513 0.285116085 0.144404893 92.38336073 0.823239737 0.373931443 14.12807776 0.1 1 0.809738259 ASSGDQGS(ph)PPCFLR ddPTM_HeLa_CUDC101_4h_R1 1 ASSGDQGSPPCFLR 14 0 A6NN50;O75147-2;O75147-1;O75147-4;O75147 A6NN50 OBSL1 Obscurin-like protein 1 1 0 AS(0.01)S(0.23)GDQGS(0.76)PPCFLR 88.282 0.016577 11979000 2588.1 2421.4 2076.7 2543.5 2723.2 2568.6 2491.3 2694.8 2796.1 2194.5 TRUE FALSE FALSE 2284.726841 2496.000464 2188.972684 2647.234924 2522.314961 2519.608235 2587.390276 3001.565139 2680.843575 2181.447016 1.047344641 1.14419486 1.003449851 1.213522448 1.156257724 1.155016929 1.186088984 1.375951429 1.228929034 1 11.09106972 -1 0.219946021 0.993240754 2.746714727 0.311298639 0.089850743 16.27989202 0.194730556 0.039022661 10.22844824 0.1 1 1.753473973 TVIIEQSWGSPK ddPTM_HeLa_CUDC101_4h_R1 1 TVIIEQSWGSPK 12 0 P10809;E7EXB4;E7ESH4;C9JL25;P10809-2;C9JL19;C9JCQ4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 244.95 2.06E-39 1122100 940.3 647.58 470.47 659.35 548.11 524.65 375.65 537.01 512.25 426.92 FALSE FALSE TRUE 830.0794594 667.5311722 495.9050313 686.241143 507.6770173 514.6431754 390.1389463 598.1410477 491.1348382 424.3806609 1.955978526 1.572953798 1.168538242 1.617041506 1.196277456 1.212692337 0.919313678 1.40944464 1.157297878 1 8.729215104 -5.657237072 7.236797008 1.458614915 1.163229222 0.121880271 0.281726898 0.388205673 24.08700973 0.055137238 0.110611372 2.20E-06 5.657237072 -0.295385693 TVKEEAEK(ac)PER ddPTM_HeLa_CUDC101_4h_R1 2 TVKEEAEKPER 11 2 K7ELL7;P14314-2;P14314 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 1 ; TVKEEAEK(1)PER;TVKEEAEK(1)PER 99.732 0.017467 17874000 8286.6 3203.3 3950.2 3252.6 8857.3 7198.7 9709.5 6131.6 7728.4 6075.9 FALSE TRUE FALSE 7315.25731 3301.989876 4163.759761 3385.255087 8203.914625 7061.396791 10083.99867 6829.596559 7409.832081 6039.760277 1.211183387 0.546708764 0.68939156 0.560494942 1.358317921 1.169151832 1.669602469 1.130772787 1.226842083 1 12.56027557 -5.635671811 19.62042379 0.986879134 1.344732696 0.361666029 0.274684438 2.234895829 376.8005829 0.043163449 0.086326975 2.31E-06 5.635671811 0.357853563 TVKEEAEKPER ddPTM_HeLa_CUDC101_4h_R1 2 TVKEEAEKPER 11 2 K7ELL7;P14314-2;P14314 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 0 ; ; 67.214 0.031566 25314000 6606 5893.5 7605.4 7638.4 8627.8 6984.1 7864.9 6090.9 7777.4 8117 FALSE FALSE TRUE 5831.654694 6075.071749 8016.570929 7949.926968 7991.344383 6850.889929 8168.251828 6784.263436 7456.81228 8068.719723 0.722748453 0.752916443 0.993536918 0.985277372 0.990410456 0.849067778 1.012335551 0.840810397 0.924163007 1 12.97812406 -6.735261434 24.99997796 0.856705493 0.947791204 0.203393899 0.091908649 381.4435414 364278.2227 0.019080588 0.026979362 1.84E-07 6.735261434 0.091085711 RPES(ph)PS(ph)EISPIKGSVR ddPTM_HeLa_CUDC101_4h_R1 1 RPESPSEISPIKGSVR 16 2 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 2 0 RPES(0.896)PS(0.826)EIS(0.276)PIKGS(0.001)VR 92.427 0.020848 40962000 7587 6963.8 7232.9 6625.2 7160 6756.4 6449.5 7478 7292.9 6507.6 TRUE FALSE FALSE 6697.663361 7178.346424 7623.932452 6895.404293 6631.821065 6627.532927 6698.259375 8329.265293 6992.283575 6468.892506 1.035364764 1.10967162 1.178552966 1.065932737 1.025186469 1.024523583 1.035456899 1.287587525 1.080908914 1 12.65930302 -1 0.087361849 0.928152232 1.492682021 0.090995068 0.079857715 176.6461554 1.123073979 1.011617038 12.02553566 0.1 1 0.564529789 REVS(ph)PAPAVAGQSK ddPTM_HeLa_CUDC101_4h_R1 4 REVSPAPAVAGQSK 14 1 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 0 REVS(1)PAPAVAGQSK;REVS(1)PAPAVAGQSK;REVS(1)PAPAVAGQSK;REVS(1)PAPAVAGQSK ;;; 105.68 0.0024821 40555100 12508.8 10921.2 11681.6 10701.3 12894.7 12792.4 11591.8 13299.1 12250.4 11632 TRUE FALSE FALSE 11042.53743 11257.66923 12313.14263 11137.74527 11943.48367 12548.40628 12038.89961 14813.01579 11745.43333 11562.81235 0.955004466 0.973609957 1.064891677 0.963238435 1.032922036 1.085238254 1.041174002 1.281091083 1.01579382 1 13.49720472 -1 0.657776391 0.9835209 27.13956569 0.796504347 0.040482949 61.65747209 0.358655268 0.006539184 2357.125011 0.1 1 26.15604479 RGS(ph)SPGSLEIPK ddPTM_HeLa_CUDC101_4h_R1 2 RGSSPGSLEIPK 12 1 A0A1B0GUI1;Q6GYQ0-3;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 RGS(0.77)S(0.223)PGS(0.006)LEIPK;RGS(0.91)S(0.09)PGSLEIPK ; 115.26 0.0023633 72358000 20560 14838.3 16646 17619.7 19129.9 18717.2 19453.5 22855 15789.6 15715.3 TRUE FALSE FALSE 18149.98797 15295.45044 17545.93311 18338.30752 17718.72539 18360.20059 20203.82801 25456.72082 15138.746 15621.8247 1.161835337 0.979107802 1.123167969 1.173890239 1.134228922 1.17529168 1.293307818 1.629561291 0.96907668 1 13.93127536 -1 0.639181315 1.07516119 46.57573402 0.873130497 0.065224877 50.91185214 0.316770686 0.011998284 3277.075695 0.1 1 45.50057284 S(ph)LKES(ph)EQESEEEILAQKK ddPTM_HeLa_CUDC101_4h_R1 1 SLKESEQESEEEILAQKK 18 2 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 S(1)LKES(0.996)EQES(0.004)EEEILAQKK 94.487 0.021649 147050000 7048.7 6700.3 6013.6 6920.8 7118.6 7183.4 7178.7 8367.1 7180.9 6438.4 TRUE FALSE FALSE 6222.462071 6906.728301 6338.713406 7203.060138 6593.47506 7046.388613 7455.584864 9319.576843 6884.900263 6400.10411 0.972243883 1.079158742 0.990407858 1.125459838 1.030213719 1.100980311 1.164916185 1.456160194 1.075748167 1 12.64387966 -1 0.598911774 0.997456629 28.90314862 0.851638661 0.051090191 31.90277464 0.228246109 0.007801896 1168.233393 0.1 1 27.90569199 APS(ph)VATVGSICDLNLK ddPTM_HeLa_CUDC101_4h_R1 2 APSVATVGSICDLNLK 16 0 O75369-8;O75369-2;O75369-9;O75369;E7EN95;O75369-7;O75369-5;O75369-4;A0A0C4DGA1 O75369-8 FLNB Filamin-B 1 0 APS(1)VATVGSICDLNLK;APS(1)VATVGSICDLNLK ; 302.15 4.87E-123 125201000 7309.7 5012.1 4972.1 4634.8 5070.4 7286.3 9122.2 12755.1 5350.8 2506.26 TRUE FALSE FALSE 6452.868047 5166.51686 5240.906766 4823.827177 4696.366694 7147.325967 9474.04631 14207.08903 5130.237759 2491.352654 2.590106237 2.073779821 2.103639064 1.936228165 1.885067008 2.868853575 3.802772078 5.702560416 2.059217811 1 11.28271354 -1 0.560789675 1.758816639 197.3521581 0.897263878 0.398693661 38.804955 0.313734527 0.109280827 9217.073046 0.1 1 195.5933415 up NMTVEQLLTGSPT(ph)SPTVEPEKPTR ddPTM_HeLa_CUDC101_4h_R1 1 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 0 NMTVEQLLTGS(0.127)PT(0.435)S(0.435)PT(0.003)VEPEKPTR 93.388 2.54E-05 73983000 1335.8 1414.5 1288.6 1471.3 1656.4 1512 1541.5 1923 1533.1 1409 TRUE FALSE FALSE 1179.219549 1458.079068 1358.265614 1531.305974 1534.210672 1483.161119 1600.956171 2141.906547 1469.904969 1400.619205 0.841927302 1.041024615 0.969760809 1.093306423 1.09538029 1.058932445 1.14303457 1.529256874 1.049467952 1 10.45184906 -1 0.513512508 0.939462741 20.14168575 0.781626094 0.078792702 32.46660983 0.300841867 0.016578384 680.7967451 0.1 1 19.20222301 LEEPTPAPSTS(ph)YSPQADSLR ddPTM_HeLa_CUDC101_4h_R1 1 LEEPTPAPSTSYSPQADSLR 20 0 G3V1L9;Q07157 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 LEEPTPAPS(0.001)T(0.001)S(0.71)YS(0.287)PQADSLR 218.88 1.97E-33 23331000 2585.5 2487.7 2264.3 1995.7 2370.5 2185.8 1984.5 1715.6 2554.9 2612.5 TRUE FALSE FALSE 2282.431609 2564.343088 2386.714907 2077.093272 2195.632938 2144.109507 2061.04283 1910.896969 2449.585941 2596.960734 0.878885683 0.98744007 0.919041584 0.799816973 0.845462509 0.825622613 0.793636501 0.735820509 0.943251051 1 11.34260849 -1 0.124629312 1.037591185 0.098690171 0.753536755 0.041473859 33.21335571 0.282173596 0.177042993 5.465047623 0.1 1 -0.938901014 TVQSLEIDLDSMR ddPTM_HeLa_CUDC101_4h_R1 2 TVQSLEIDLDSMR 13 0 P05783;F8VZY9;CON__H-INV:HIT000015463 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 ; ; 226.42 3.31E-32 53876000 3729.6 3292.4 2975.4 3106.7 3449.7 2921.6 3065.1 3089 3012.3 3149.1 FALSE FALSE TRUE 3292.421942 3393.834942 3136.259124 3233.404654 3195.222504 2865.875348 3183.321934 3440.639274 2888.131719 3130.369013 1.051767995 1.084164495 1.001881603 1.032914855 1.020717523 0.915507193 1.016915872 1.099116193 0.922617016 1 11.61211702 -5.509492779 24.55996231 1.028567709 1.003979874 0 0.057833934 1399.574036 2567869.773 0.006984326 0.014978578 3.09E-06 5.509492779 -0.024587834 AQTPPGPSLSGS(ph)KSPCPQEK ddPTM_HeLa_CUDC101_4h_R1 2 AQTPPGPSLSGSKSPCPQEK 20 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 AQTPPGPS(0.076)LS(0.212)GS(0.602)KS(0.11)PCPQEK;AQTPPGPS(0.001)LS(0.009)GS(0.784)KS(0.205)PCPQEK ; 78.531 0.0025567 480223000 4803.4 4409.4 4560.8 4023.4 4571.5 4438.3 4733.1 4637.7 4312 3838.7 TRUE FALSE FALSE 4240.352733 4545.248388 4807.370644 4187.491643 4234.269553 4353.646822 4915.657252 5165.637022 4134.257535 3815.867242 1.111242207 1.191144267 1.259836975 1.097389237 1.109648026 1.140932466 1.288214956 1.353725561 1.083438514 1 11.89779526 -1 0.080169934 0.828381099 2.052249798 0.530417337 0.070364495 91.01386459 0.536694824 1.265046348 12.405841 0.1 1 1.223868699 VGS(ph)TENIKHQPGGGR ddPTM_HeLa_CUDC101_4h_R1 2 VGSTENIKHQPGGGR 15 1 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;H0Y2V1;H7C4C5;F8W9U4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 VGS(0.5)T(0.5)ENIKHQPGGGR;VGS(0.5)T(0.5)ENIKHQPGGGR ; 65.949 0.022854 16113400 3146.1 4599.2 4654.7 5298.1 6884.8 5328.7 5606.7 9510.9 4505.4 2035.65 TRUE FALSE FALSE 2777.318927 4740.895901 4906.347162 5514.179418 6376.92202 5227.063926 5822.952297 10593.58241 4319.685505 2023.541863 1.372503815 2.342870186 2.424633387 2.725013759 3.151366491 2.583126161 2.877604068 5.235168397 2.134715166 1 10.98266698 -1 0.181626409 0.66703782 16.9414188 0.661892246 0.629463056 16.4288948 0.179270856 0.640514766 74.43886969 0.1 1 16.27438098 RGS(ph)DASDFDISEIQSVCSDVETVPQTHRPTPR ddPTM_HeLa_CUDC101_4h_R1 1 RGSDASDFDISEIQSVCSDVETVPQTHRPTPR 32 2 F6QMI7;E9PHM6;Q03001-8;Q03001-14;A0A494C073;A0A0U1RQJ2;H0YC65;A0A494C1U5;F8W9J4;Q03001 F6QMI7;F8W9J4 DST Dystonin 1 0 RGS(0.822)DAS(0.178)DFDISEIQSVCSDVETVPQTHRPTPR 96.533 3.19E-10 31897000 482.33 442.17 245.65 332.7 462.97 439.13 406.8 476.32 397.33 329.97 TRUE FALSE FALSE 425.7920086 455.7927336 258.9305821 346.2689441 428.8176255 430.7543269 422.4904123 530.5423434 380.9518892 328.0073238 1.298117382 1.389580965 0.78940488 1.055674428 1.307341618 1.313246064 1.288051765 1.617471029 1.161412754 1 8.357584218 -1 0.59320717 1.134111109 29.6387699 0.435833137 0.164217541 121.4487719 0.885493643 0.032699965 4492.235073 0.1 1 28.50465879 ETESAPGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 5 ETESAPGSPR 10 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 0 ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR;ETESAPGS(1)PR ;;;; 168.83 3.96E-07 2125206400 23086.82 22497 23138.42 22095.25 22689.1 18721.75 17655.75 16204.41 25765.99 25645.52 TRUE FALSE FALSE 20380.61796 23190.1059 24389.35298 22996.3898 21015.3703 18364.66381 18336.73819 18049.05453 24703.90499 25492.97931 0.799460028 0.909666368 0.956708617 0.902067566 0.824359132 0.720381231 0.719285807 0.708000988 0.969047387 1 14.63781237 -1 0.126991407 1.012142293 1.36E-08 0.690650842 0.058752572 52.14588582 0.44932083 0.288931681 9.451952305 0.1 1 -1.012142279 AGEPNSPDAEEANS(ph)PDVT(ph)AGCDPAGVHPPR ddPTM_HeLa_CUDC101_4h_R1 2 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 2 0 AGEPNS(0.353)PDAEEANS(0.991)PDVT(0.657)AGCDPAGVHPPR;AGEPNS(0.004)PDAEEANS(1)PDVT(0.997)AGCDPAGVHPPR ; 119.2 1.65E-13 1013370000 3343.1 2769.24 2873.62 2624.62 3495.3 3493 3209.1 2942.63 3222.2 2574 TRUE FALSE FALSE 2951.226886 2854.557002 3028.976589 2731.663348 3237.458683 3426.376845 3332.876062 3277.607105 3089.379552 2558.689734 1.153413346 1.115632335 1.183799876 1.067602419 1.265279897 1.339113844 1.302571398 1.280970905 1.207406866 1 11.3211895 -1 0.086710488 0.838172884 2.198233936 0.372110669 0.08201068 55.90560938 0.353136136 0.779254364 9.10424168 0.1 1 1.360061053 DNGGDAAS(ph)NLLY(ph)RFT(ph)YGHAGT(ph)IY(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 DNGGDAASNLLYRFTYGHAGTIYK 24 1 Q8N4N3-2 Q8N4N3-2 KLHL36 Kelch-like protein 36 5 0 DNGGDAAS(1)NLLY(1)RFT(0.87)Y(0.457)GHAGT(0.812)IY(0.862)K 40.254 0.030791 27363000 2809.2 2487.5 2222.9 2350.8 3098.2 2832.2 2539.9 2840.9 2281 2640 TRUE FALSE FALSE 2479.909834 2564.136927 2343.076698 2446.675785 2869.651958 2778.180504 2637.864794 3164.296573 2186.976215 2624.297163 0.944980572 0.977075677 0.892839702 0.932316591 1.093493526 1.058637925 1.005170006 1.205769155 0.833356925 1 11.35771538 -1 0.60365001 0.968834886 15.10706801 0.552824972 0.067409441 82.48554918 0.580827246 0.009610133 1544.435212 0.1 1 14.13823313 S(ph)QSREEQAVLLVR ddPTM_HeLa_CUDC101_4h_R1 2 SQSREEQAVLLVR 13 1 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 0 S(0.742)QS(0.258)REEQAVLLVR;S(0.971)QS(0.029)REEQAVLLVR ; 97.823 0.0062399 8675000 1566.72 1306.2 1564.37 1428.62 1419.22 1293.82 1620.29 1279.15 1424.07 1403.42 TRUE FALSE FALSE 1383.071457 1346.442474 1648.944574 1486.885299 1314.526968 1269.142539 1682.785128 1424.763265 1365.369232 1395.072395 0.991397623 0.96514165 1.181977781 1.065812286 0.942264339 0.909732386 1.206234984 1.021282673 0.978708515 1 10.44612428 -1 0.205096248 0.990614839 1.400389149 0.046374577 0.090961571 116.6484965 1.354061376 0.08106433 15.6063422 0.1 1 0.40977431 VKPPPS(ph)PTTEGPSLQPDLAPEEAAGTQRPK ddPTM_HeLa_CUDC101_4h_R1 4 VKPPPSPTTEGPSLQPDLAPEEAAGTQRPK 30 2 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 VKPPPS(0.333)PT(0.333)T(0.333)EGPS(0.002)LQPDLAPEEAAGTQRPK;VKPPPS(0.681)PT(0.158)T(0.158)EGPS(0.002)LQPDLAPEEAAGTQRPK;VKPPPS(0.331)PT(0.331)T(0.331)EGPS(0.008)LQPDLAPEEAAGTQRPK;VKPPPS(0.412)PT(0.29)T(0.29)EGPS(0.009)LQPDLAPEEAAGTQRPK ;;; 106.88 1.71E-10 457830000 10358.8 10510 11149.9 10622.2 12164.4 11792.1 11048.55 11896.1 11299.89 12052.99 TRUE FALSE FALSE 9144.557167 10833.80064 11752.69732 11055.41923 11267.05645 11567.18534 11474.69627 13250.30394 10834.10375 11981.29828 0.763235916 0.904225935 0.980920185 0.922722978 0.940386942 0.965436722 0.95771727 1.105915538 0.904251234 1 13.54849662 -1 0.551217964 0.895229225 9.948963933 0.445925791 0.061230013 114.9021934 0.956321838 0.016964918 1237.619967 0.1 1 9.053734707 LTQTS(ph)STEQLNVLETETEVLNK ddPTM_HeLa_CUDC101_4h_R1 2 LTQTSSTEQLNVLETETEVLNK 22 0 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 LT(0.004)QT(0.164)S(0.451)S(0.279)T(0.102)EQLNVLETETEVLNK;LT(0.013)QT(0.16)S(0.478)S(0.261)T(0.088)EQLNVLETETEVLNK ; 163.67 6.05E-08 77739000 12399.4 10022.7 9804 9673.2 10397.2 10574.1 9963.8 7453.5 10919 11801.8 TRUE FALSE FALSE 10945.96113 10331.48751 10334.0339 10067.71491 9630.21927 10372.41666 10348.1071 8301.976312 10468.9142 11731.60237 0.93303206 0.880654422 0.880871476 0.858170486 0.820878425 0.884143217 0.882071074 0.707659197 0.892368653 1 13.51811246 -1 0.084660492 1.126832816 0.193298357 0.443921637 0.053096957 58.34631882 0.36095336 0.576477399 6.376946951 0.1 1 -0.933534459 TGS(ph)YGALAEITASK ddPTM_HeLa_CUDC101_4h_R1 1 TGSYGALAEITASK 14 0 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIS4;H0YHI8;A0A3B3ISH4;F8VZN8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 T(0.325)GS(0.673)YGALAEIT(0.001)ASK 156.57 6.98E-05 176980000 2959.1 3036.5 2136 2459 3015.2 2206.6 2519.4 1936.1 2135.9 2874.6 TRUE FALSE FALSE 2612.238784 3130.050966 2251.478621 2559.288649 2792.774703 2164.512781 2616.574102 2156.497798 2047.857298 2857.501751 0.914168743 1.095380244 0.787918545 0.895638523 0.977348378 0.757484324 0.915685914 0.754679432 0.716660032 1 11.48053867 -1 0.177159003 0.999531916 0.132690069 0 0.119945102 48.48125964 0.521656903 0.107589008 11.32975643 0.1 1 -0.866841847 GLVAAYSGES(ph)DS(ph)EEEQERGGPER ddPTM_HeLa_CUDC101_4h_R1 1 GLVAAYSGESDSEEEQERGGPER 23 1 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 2 0 GLVAAY(0.015)S(0.068)GES(0.929)DS(0.987)EEEQERGGPER 64.249 0.0070638 4350500 1473.8 1597.1 1524.5 1593.9 1985.4 1832.9 1811.3 2318.2 1718.6 1234.1 TRUE FALSE FALSE 1301.043398 1646.304758 1606.919081 1658.906131 1838.940997 1797.940486 1881.162448 2582.094518 1647.758581 1226.759518 1.060552927 1.341994689 1.30988923 1.35226677 1.499023215 1.465601415 1.533440271 2.104809035 1.343179781 1 10.26063675 -1 0.227559073 0.956492395 6.534295371 0.708463217 0.154698226 10.92672694 0.132399651 0.074660275 22.85507998 0.1 1 5.577802976 up MSCFSRPSMSPT(ph)PLDR ddPTM_HeLa_CUDC101_4h_R1 1 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 MSCFSRPSMS(0.345)PT(0.655)PLDR 145.69 0.0042189 79520000 1302.5 1093.4 1007.2 948.32 1326.2 997.41 1028.5 1518.7 977.29 821.64 TRUE FALSE FALSE 1149.822924 1127.086358 1061.652279 986.9965886 1228.368868 978.386066 1068.16959 1691.582669 937.0056926 816.7528487 1.407797875 1.379960119 1.299845211 1.208439726 1.503966433 1.197897341 1.307824749 2.071107155 1.147232843 1 9.673755771 -1 0.039228667 1.17E-09 3.600376408 0.394264321 0.214413626 575.877056 1.739197189 44.71934908 140.1205865 0.1 1 3.600376407 KLGPGRPLPTFPTSECTS(ph)DVEPDTR ddPTM_HeLa_CUDC101_4h_R1 1 KLGPGRPLPTFPTSECTSDVEPDTR 25 2 Q8TDD1-2;Q8TDD1;H0YHZ9 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 KLGPGRPLPTFPTSECT(0.114)S(0.821)DVEPDT(0.064)R 62.291 0.0017448 62612000 1424.9 1248.4 1161.8 1345.8 1378.4 1742.4 1585.1 1687.2 1406.2 849.26 TRUE FALSE FALSE 1257.875382 1286.861724 1224.610422 1400.687541 1276.718178 1709.166623 1646.237838 1879.264028 1348.235841 844.2085638 1.490005475 1.524340998 1.450601753 1.659172391 1.512325547 2.024578637 1.950036885 2.226066056 1.59704118 1 9.721455654 -1 0.110168525 0.699011333 5.144203915 0.620199527 0.203207947 22.79041958 0.175884467 0.719577117 15.470868 0.1 1 4.445192582 VRGPVSGS(ph)PDSMNASR ddPTM_HeLa_CUDC101_4h_R1 1 VRGPVSGSPDSMNASR 16 1 A0A499FJS7;O14920-4;O14920-2;O14920 A0A499FJS7 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta 1 0 VRGPVS(0.136)GS(0.841)PDS(0.023)MNASR 168.55 5.19E-11 0 826.86 718.01 812.19 712.48 1093 733.1 892.93 1006.6 725.99 592.42 TRUE FALSE FALSE 729.9367242 740.131037 856.0994481 741.538014 1012.371568 719.1173389 927.3706092 1121.187275 696.0643849 588.8962595 1.239499678 1.256810559 1.453735585 1.259199735 1.719100013 1.221127367 1.57476057 1.903879091 1.181981332 1 9.2018697 -1 0.12782188 0.858155792 3.77050902 0.61262489 0.163626731 33.742767 0.292167398 0.531133606 17.73229891 0.1 1 2.912353228 CRS(ph)PGMLEPLGSSR ddPTM_HeLa_CUDC101_4h_R1 1 CRSPGMLEPLGSSR 14 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 CRS(1)PGMLEPLGSSR 112.57 0.0016581 395650000 661.11 635.83 473.24 509.2 714.45 695.92 567.6 656.95 760.21 536.19 TRUE FALSE FALSE 583.615688 655.4191687 498.8247859 529.967377 661.7464469 682.6464855 589.4925221 731.7345325 728.873822 533.000718 1.094962292 1.229677834 0.935880139 0.994308936 1.241548884 1.280760912 1.105988233 1.372858437 1.367491257 1 9.057993666 -1 0.254859719 1.023811834 2.929487269 0.029066161 0.14774649 34.39637282 0.431244738 0.054440433 28.62674857 0.1 1 1.905675435 AATEALGEKS(ph)PDSATVSGYDIMK ddPTM_HeLa_CUDC101_4h_R1 3 AATEALGEKSPDSATVSGYDIMK 23 1 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;H0Y2S9;H7C3G6;H0Y7E2;K7EL39;J3QRL2 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 AATEALGEKS(0.986)PDS(0.001)AT(0.009)VS(0.001)GY(0.004)DIMK;AAT(0.026)EALGEKS(0.969)PDS(0.003)AT(0.002)VSGYDIMK;AAT(0.007)EALGEKS(0.752)PDS(0.189)AT(0.05)VSGY(0.001)DIMK ;; 103.92 2.00E-05 174687000 7285.1 7048.7 6290.2 6681.6 7980.5 7772.8 7249.2 8833.5 7627.4 6945.6 TRUE FALSE FALSE 6431.151621 7265.862092 6630.267239 6954.104528 7391.794414 7624.54679 7528.804072 9839.069934 7312.995344 6904.287262 0.931472197 1.05236961 0.960311613 1.00721541 1.070609338 1.10432062 1.09045348 1.42506671 1.059196274 1 12.75327678 -1 0.62197554 0.975157954 32.21101742 0.840717381 0.051754168 39.66560756 0.262320384 0.008032524 1698.664549 0.1 1 31.23585946 SLPSSS(ph)QLKGSPQAISR ddPTM_HeLa_CUDC101_4h_R1 1 SLPSSSQLKGSPQAISR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 0 S(0.002)LPS(0.179)S(0.179)S(0.567)QLKGS(0.062)PQAIS(0.011)R 72.662 0.012414 79159000 1929.5 1524.6 1629.9 1580.2 1628.8 1765.3 1263.6 1276.2 1864.9 1873.3 TRUE FALSE FALSE 1703.326935 1571.571119 1718.017324 1644.647386 1508.646669 1731.629844 1312.337475 1421.477449 1788.028033 1862.157528 0.914706145 0.843951758 0.922595053 0.883194553 0.810160605 0.929905133 0.704740311 0.763349732 0.960191609 1 10.86275941 -1 0.12626871 1.047520185 0.068031693 0.63797992 0.052590807 34.23981894 0.293772109 0.185652069 5.966584655 0.1 1 -0.979488491 GAGDGS(ph)DEEVDGKADGAEAKPAE ddPTM_HeLa_CUDC101_4h_R1 8 GAGDGSDEEVDGKADGAEAKPAE 23 2 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE ;;;;;;; 68.927 0.0018604 2532817000 25661 24181.1 24755.3 24446.9 27036.7 26105.2 24472.2 25084.5 25813.2 26403 TRUE FALSE FALSE 22653.05648 24926.09103 26093.6464 25443.95025 25042.25651 25607.2868 25416.10095 27940.01808 24749.16897 26245.95378 0.863106621 0.949711763 0.994196919 0.969442774 0.954137796 0.975666079 0.968381685 1.064545732 0.942970836 1 14.67980741 -1 0.621309634 0.941069074 9.313593262 0.416417901 0.03683324 171.633274 1.137732685 0.009404724 1967.714832 0.1 1 8.372524188 RAAS(ph)AATAAPTATPAAQESGTIPK ddPTM_HeLa_CUDC101_4h_R1 1 RAASAATAAPTATPAAQESGTIPK 24 1 O00116;B8ZZ81 O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" 1 0 RAAS(0.739)AAT(0.171)AAPT(0.082)AT(0.008)PAAQESGTIPK 72.11 0.00034879 41676000 2355.7 2040.6 2144.3 1884.1 2330.7 2438.9 2059 2306.5 1473.5 2132.6 TRUE FALSE FALSE 2079.568417 2103.468467 2260.227344 1960.941742 2158.768904 2392.382046 2138.41632 2569.062637 1412.761706 2119.9152 0.980967737 0.992241797 1.066187621 0.92500952 1.018327952 1.128527238 1.008727292 1.211870473 0.666423688 1 11.04979084 -1 0.600875452 0.992563892 13.5356598 0.281056522 0.114865384 76.38334075 0.542910025 0.008183252 1262.027762 0.1 1 12.54309591 T(ph)SIS(ph)DMSKK ddPTM_HeLa_CUDC101_4h_R1 1 TSISDMSKK 9 1 F8WAC1 F8WAC1 CMC1 2 0 T(0.772)S(0.231)IS(0.958)DMS(0.039)KK 72.434 0.0024253 0 1323 1309 1272 1368.8 1536 1414.4 1420.7 1536.2 1434 1470.1 TRUE FALSE FALSE 1167.919946 1349.328738 1340.768168 1424.62558 1422.69234 1387.422677 1475.496875 1711.074798 1374.889913 1461.35578 0.799203015 0.923340337 0.917482372 0.974865669 0.973542761 0.949407869 1.009676696 1.17088174 0.940831748 1 10.51309174 -1 0.617081172 0.909364905 19.22049304 0.659674857 0.051548406 105.5364031 0.70979842 0.013354447 2625.417122 0.1 1 18.31112813 RPLEEDFRRS(ph)PTEDFR ddPTM_HeLa_CUDC101_4h_R1 3 RPLEEDFRRSPTEDFR 16 3 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 RPLEEDFRRS(0.845)PT(0.155)EDFR;RPLEEDFRRS(0.928)PT(0.072)EDFR;RPLEEDFRRS(0.922)PT(0.078)EDFR ;; 87.66 0.0066848 642093000 9042.8 9222.5 8941.6 8511.8 10075.6 9734.5 9321.9 9957.7 9078 9415.8 TRUE FALSE FALSE 7982.816692 9506.634294 9425.009943 8858.947995 9332.343061 9548.830631 9681.448806 11091.24432 8703.800998 9359.794403 0.852883765 1.015688367 1.006967625 0.946489593 0.9970671 1.020196622 1.034365541 1.184988029 0.929913695 1 13.19226112 -1 0.502156774 0.939557223 8.608878177 0.670889457 0.04643572 52.48064872 0.50112455 0.012403031 427.6465548 0.1 1 7.669320954 LSEEAECPNPST(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 LSEEAECPNPSTPSK 15 0 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 LSEEAECPNPS(0.304)T(0.693)PS(0.003)K;LSEEAECPNPS(0.065)T(0.897)PS(0.038)K ; 176.43 1.49E-06 58494600 8857.4 7705.6 8340.6 8925.1 10545.9 9260.2 11050.6 11294 7827.5 6981.5 TRUE FALSE FALSE 7819.148999 7943.000403 8791.518065 9289.104156 9767.949967 9083.577114 11476.82534 12579.66331 7504.847137 6939.973728 1.126682795 1.144528886 1.266794142 1.338492698 1.407490914 1.308877738 1.653727492 1.812638463 1.081394171 1 12.76071449 -1 0.236549306 0.995305279 5.794100064 0.925937614 0.066224442 7.709697121 0.094667145 0.039845201 14.614407 0.1 1 4.798794785 AESSAGDGPVPYSQGS(ph)SSLIMPRPNSVAATSSTK ddPTM_HeLa_CUDC101_4h_R1 1 AESSAGDGPVPYSQGSSSLIMPRPNSVAATSSTK 34 1 Q9C0D5;Q9C0D5-2 Q9C0D5 TANC1 Protein TANC1 1 0 AESS(0.001)AGDGPVPY(0.111)S(0.111)QGS(0.231)S(0.231)S(0.231)LIMPRPNS(0.071)VAAT(0.007)S(0.003)S(0.002)TK 59.226 0.00040056 0 640.18 597.97 641.52 598.5 825.94 544.59 745.02 930.37 521.41 583.76 TRUE FALSE FALSE 565.1390708 616.3927469 676.2025117 622.9094169 765.0120517 534.2028531 773.755671 1036.27956 499.9172591 580.2877696 0.973894506 1.062219091 1.165288237 1.073449157 1.3183322 0.920582651 1.333399929 1.785802863 0.861498872 1 9.180624712 -1 0.735972004 1.015598412 125.3298497 0.755592313 0.127907908 106.0204042 0.455043716 0.019137305 21833.77948 0.1 1 124.3142513 SES(ph)S(ph)ELLDS(ph)NDVMGS(ph)SIPSPSPPDPAR ddPTM_HeLa_CUDC101_4h_R1 1 SESSELLDSNDVMGSSIPSPSPPDPAR 27 0 O60285 O60285 NUAK1 NUAK family SNF1-like kinase 1 4 0 S(0.121)ES(0.884)S(0.987)ELLDS(0.987)NDVMGS(0.263)S(0.263)IPS(0.263)PS(0.232)PPDPAR 42.325 0.021017 17678000 3428.2 3168.1 3120 3028.4 3478.1 3466.7 3387.8 3549.2 3258.6 3030.3 TRUE FALSE FALSE 3026.351593 3265.705406 3288.676637 3151.911242 3221.527492 3400.578473 3518.468581 3953.226582 3124.279129 3012.275641 1.004672863 1.084132329 1.091758202 1.046355519 1.069466369 1.128906806 1.168043367 1.312372124 1.03718235 1 11.55663808 -1 0.352560764 1.001999382 4.553756735 0.884728222 0.029870612 11.13461721 0.139162389 0.008622031 26.70095483 0.1 1 3.551757353 SLTNPT(ph)PIQQQLR ddPTM_HeLa_CUDC101_4h_R1 2 SLTNPTPIQQQLR 13 0 Q9UJF2-2;Q9UJF2;H0Y638 Q9UJF2-2 RASAL2 Ras GTPase-activating protein nGAP 1 0 S(0.002)LT(0.001)NPT(0.997)PIQQQLR;SLTNPT(0.999)PIQQQLR ; 184 3.11E-10 44934000 4936.3 3915.4 3256.3 3759.4 4697.7 4850.6 4525 4817.2 3209.5 3079.5 TRUE FALSE FALSE 4357.674397 4036.028833 3432.345428 3912.724582 4351.16003 4758.082887 4699.530766 5365.570576 3077.203052 3061.182997 1.423526265 1.318453956 1.121248037 1.278174021 1.421398209 1.554328144 1.535200859 1.752776813 1.005233289 1 11.57987358 -1 0.04207235 1.67E-09 3.72925946 0.746642785 0.117811369 301.25355 0.97357076 23.18384788 78.80421627 0.1 1 3.729259458 MS(ph)S(ph)PEDDSDTKR ddPTM_HeLa_CUDC101_4h_R1 1 MSSPEDDSDTKR 12 1 Q15424-2;Q15424;Q15424-4;Q15424-3 Q15424-2 SAFB Scaffold attachment factor B1 2 0 MS(0.965)S(0.649)PEDDS(0.186)DT(0.2)KR 113.95 0.00030694 0 5047.9 4344.9 3958.8 4466.1 3965.6 4095.1 4027.4 3174.2 4815.2 4824.7 TRUE FALSE FALSE 4456.192814 4478.761219 4172.824703 4648.246862 3673.065589 4016.99279 4182.738167 3535.538097 4616.715418 4796.00247 0.929147314 0.933852984 0.870063085 0.969191924 0.76585982 0.837571043 0.872130111 0.737184378 0.962617398 1 12.22761669 -1 0.133782935 1.039408023 0.132978111 0.642650758 0.04975626 31.90401836 0.285667851 0.142616336 5.504358181 0.1 1 -0.906429913 RLS(ph)NLPTVDPIAVCHELYNTIR ddPTM_HeLa_CUDC101_4h_R1 1 RLSNLPTVDPIAVCHELYNTIR 22 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;Q86U86-6;C9JCJ2;C9J053;C9JQF1;C9JPI5 Q86U86-8 PBRM1 Protein polybromo-1 1 0 RLS(0.972)NLPT(0.028)VDPIAVCHELYNTIR 93.196 0.00016688 21683000 642.18 707.55 561 524.52 837.67 916.78 850.39 919.82 862.15 362.78 TRUE FALSE FALSE 566.9046339 729.3487768 591.3293569 545.9121928 775.876753 899.293949 883.1898272 1024.528591 826.6118121 360.6221684 1.57201826 2.022473494 1.63974766 1.513806528 2.151494891 2.493728971 2.449072477 2.841002801 2.292182468 1 8.494344276 -1 0.139753334 0.744332293 8.044165354 0.326607936 0.435061421 17.64492393 0.163010646 0.579735167 25.82623213 0.1 1 7.299833061 LPPES(ph)PGPPESPGPPER ddPTM_HeLa_CUDC101_4h_R1 1 LPPESPGPPESPGPPER 17 0 Q9Y2D5-5;Q9Y2D5-7;F8WF36 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 LPPES(0.697)PGPPES(0.303)PGPPER 105.39 0.0015919 3910700 610.96 684.83 549.52 531.38 851.22 726.5 669.92 849.35 744.12 527.8 TRUE FALSE FALSE 539.344195 705.9288006 579.2287134 553.0519732 788.4271965 712.6432229 695.7590388 946.0365708 713.4470586 524.6606221 1.027986802 1.345496061 1.104006455 1.054113745 1.502737509 1.35829371 1.326112556 1.803140032 1.359825816 1 9.035240704 -1 0.253642387 0.978610015 5.644423712 0.442709101 0.177515756 17.57201204 0.220057831 0.069273574 35.5758896 0.1 1 4.665813697 KPVTVSPTTPTS(ph)PTEGEAS ddPTM_HeLa_CUDC101_4h_R1 2 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 0 KPVTVSPT(0.002)T(0.108)PT(0.036)S(0.802)PT(0.029)EGEAS(0.023);KPVTVSPTT(0.026)PT(0.189)S(0.781)PT(0.003)EGEAS ; 92.952 0.0056739 314020000 3618.7 3521.56 3253.76 3382.49 3573.6 4143.7 3841.3 4087.9 2962.65 3051.57 TRUE FALSE FALSE 3194.521472 3630.05509 3429.668108 3520.442563 3309.982648 4064.665826 3989.460228 4553.250012 2840.528313 3033.419126 1.053109161 1.196687612 1.130627838 1.160552636 1.091172209 1.339961824 1.315169471 1.501028979 0.936411421 1 11.56672913 -1 0.257006132 1.000065246 4.229278007 0.85694578 0.061590659 10.98364422 0.137972959 0.028580139 15.6662771 0.1 1 3.229212761 QGPGGGLVGAT(ph)INK ddPTM_HeLa_CUDC101_4h_R1 1 QGPGGGLVGATINK 14 0 A0A0U1RQK4 A0A0U1RQK4 1 0 QGPGGGLVGAT(1)INK 99.844 0.037647 18688000 812.98 860.48 757.07 851.55 881.63 862.08 882.18 983.23 819.39 809.95 TRUE FALSE FALSE 717.6837168 886.9903689 797.9994942 886.2798897 816.5939114 845.6372603 916.2059781 1095.156929 785.6143974 805.1323814 0.89138598 1.101670221 0.991140727 1.100787784 1.014235584 1.050308347 1.137956936 1.360219703 0.975758044 1 9.653082203 -1 0.477927984 0.962538143 11.37389157 0.748780377 0.060481778 32.0618014 0.325117204 0.0140839 333.6153462 0.1 1 10.41135343 KYTELPHGAISEDQAVGPADIPCDSTGQT(ph)ST ddPTM_HeLa_CUDC101_4h_R1 2 KYTELPHGAISEDQAVGPADIPCDSTGQTST 31 1 Q9H773;H3BPN2;H3BSA6 Q9H773 DCTPP1 dCTP pyrophosphatase 1 1 0 KYTELPHGAISEDQAVGPADIPCDS(0.095)T(0.095)GQT(0.27)S(0.27)T(0.27);KYTELPHGAISEDQAVGPADIPCDS(0.099)T(0.099)GQT(0.268)S(0.268)T(0.268) ; 85.595 3.13E-06 36332000 2625.06 2395.61 2583.56 2386.9 2947.3 2968.6 2874.4 3178 3032.98 2066.18 TRUE FALSE FALSE 2317.354446 2469.415905 2723.235068 2484.248099 2729.883551 2911.978901 2985.266571 3539.770674 2907.959281 2053.890269 1.128275683 1.202311507 1.325891217 1.209533019 1.329128236 1.417786989 1.453469358 1.72344683 1.415829913 1 11.00414339 -1 0.195413602 0.974157488 4.197970083 0.484835527 0.137061166 8.548283044 0.096950617 0.053856921 8.441439707 0.1 1 3.223812594 RPEPSTLENITDDKYATVS(ph)SPSK ddPTM_HeLa_CUDC101_4h_R1 1 RPEPSTLENITDDKYATVSSPSK 23 2 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 0 RPEPSTLENIT(0.003)DDKY(0.009)AT(0.01)VS(0.429)S(0.429)PS(0.121)K 67.866 0.0011316 24123000 2056.2 2077.9 1350.4 1837.6 1703.9 1956.6 1555.8 1383.7 1922.7 1915.8 TRUE FALSE FALSE 1815.175353 2141.917636 1423.406709 1912.545271 1578.206692 1919.281115 1615.807727 1541.214815 1843.445492 1904.404736 0.953145788 1.124717659 0.747428675 1.004274582 0.828713908 1.007811563 0.848458154 0.80928953 0.967990395 1 10.89512441 -1 0.223779877 0.997177417 0.064566969 0.212094255 0.097708984 52.54831189 0.63278282 0.063387907 17.97009229 0.1 1 -0.932610448 SGS(ph)SPGLRDGSGT(ph)PS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SGSSPGLRDGSGTPSR 16 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 0 S(0.107)GS(0.665)S(0.235)PGLRDGS(0.051)GT(0.952)PS(0.99)R 86.222 0.016343 6678000 1597.3 1930.7 1724.4 1954.6 2461.1 2132.2 2371.1 2993.9 2203.2 2129 TRUE FALSE FALSE 1410.066915 1990.182579 1817.62628 2034.317037 2279.549556 2091.531837 2462.554121 3334.713474 2112.383163 2116.336613 0.666277239 0.940390374 0.858854999 0.96124455 1.077120502 0.988279381 1.163592836 1.575700885 0.998131937 1 11.0473534 -1 0.555098285 0.852067484 34.11590608 0.774908047 0.105594226 47.92425811 0.39421201 0.024709256 1912.494518 0.1 1 33.2638386 DSGRGDS(ph)VSDSGSDALR ddPTM_HeLa_CUDC101_4h_R1 1 DSGRGDSVSDSGSDALR 17 1 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 0 DS(0.14)GRGDS(0.715)VS(0.145)DSGSDALR 118.05 0.0017113 98835000 3184.9 2594.1 2687.3 2663.9 3216.9 2724.8 3374.6 2658.9 2857.5 2498.2 TRUE FALSE FALSE 2811.57085 2674.021146 2832.583567 2772.545356 2979.595696 2672.82898 3504.759452 2961.578428 2739.712641 2483.340595 1.13217287 1.07678389 1.140634342 1.116457952 1.199833684 1.076303824 1.411308404 1.19257843 1.103236763 1 11.27806643 -1 0.108598549 0.933445673 1.956968917 0.392178646 0.081518989 60.8326146 0.46409258 0.453186492 9.362156794 0.1 1 1.023523244 T(ph)PEPSSPVKEPPPVLAKPK ddPTM_HeLa_CUDC101_4h_R1 1 TPEPSSPVKEPPPVLAKPK 19 2 Q86TC9;A0A087WX60;Q86TC9-2 Q86TC9 MYPN Myopalladin 1 0 T(0.726)PEPS(0.137)S(0.137)PVKEPPPVLAKPK 83.251 0.0046978 183120000 2820.6 2959.3 2593.4 3089.8 3320.5 3132.1 2634.4 3587.7 3083.2 2617 TRUE FALSE FALSE 2489.973544 3050.472525 2733.607049 3215.815399 3075.55333 3072.360411 2736.00969 3996.109266 2956.109191 2601.433968 0.957154237 1.172611938 1.050807779 1.236170297 1.182253084 1.181025715 1.051731362 1.536117893 1.136338353 1 11.34509137 -1 0.239718494 0.962788658 3.428861969 0.392307451 0.120362738 25.61431968 0.315837015 0.065022395 25.40219161 0.1 1 2.466073311 NLEELEEKST(ph)TPPPAEPVSLPQEPPKPR ddPTM_HeLa_CUDC101_4h_R1 3 NLEELEEKSTTPPPAEPVSLPQEPPKPR 28 2 Q9UN86-2 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 NLEELEEKS(0.121)T(0.44)T(0.44)PPPAEPVSLPQEPPKPR;NLEELEEKS(0.122)T(0.502)T(0.376)PPPAEPVSLPQEPPKPR;NLEELEEKS(0.123)T(0.487)T(0.389)PPPAEPVS(0.001)LPQEPPKPR ;; 66.372 0.0005995 1192342000 10101.85 12303 12256.33 11332.23 18909.5 12760.96 15382.1 20471.6 12490.5 8964.08 TRUE FALSE FALSE 8917.726456 12682.04085 12918.94427 11794.40732 17514.58386 12517.56595 15975.39275 22802.00419 11975.6363 8910.761253 1.000781662 1.423227543 1.44981376 1.323613885 1.965554161 1.404769536 1.792820197 2.558928867 1.3439521 1 13.12133297 -1 0.245031126 0.924536434 9.819211055 0.681098265 0.251854588 14.89560008 0.184861109 0.126458414 54.8759209 0.1 1 8.894674622 PT(ph)MQASR ddPTM_HeLa_CUDC101_4h_R1 1 PTMQASR 7 0 Q13636 Q13636 RAB31 Ras-related protein Rab-31 1 0 PT(0.998)MQAS(0.002)R 59.641 0.030675 6350400 160.27 217.91 129.73 134.31 189.01 141.34 277.44 157.86 111.81 114.91 TRUE FALSE FALSE 141.4833936 224.6235488 136.7435962 139.7877423 175.0671089 138.644175 288.1409537 175.8301443 107.2011445 114.2265102 1.238621344 1.966474756 1.197126621 1.223776705 1.53263116 1.213765305 2.522540111 1.539311181 0.938496189 1 6.835753707 -1 0.128829126 0.814485656 4.479782344 0.330768888 0.375777933 64.94646034 0.565642901 1.26680756 43.34779889 0.1 1 3.665296687 STSFRGGMGS(ph)GGLATGIAGGLAGMGGIQNEKETMQSLNDR ddPTM_HeLa_CUDC101_4h_R1 1 STSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR 40 2 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 1 0 S(0.069)T(0.069)S(0.069)FRGGMGS(0.79)GGLAT(0.005)GIAGGLAGMGGIQNEKETMQSLNDR 74.675 7.49E-08 58204000 546.52 596.14 502.43 701.96 1302.8 823.92 940.29 1360.5 789.04 800.08 TRUE FALSE FALSE 482.4577541 614.5063668 529.5928856 730.5889629 1206.69504 808.2050987 976.5573003 1515.373821 756.5154372 795.3210886 0.606620095 0.772651921 0.665885632 0.918608815 1.517242604 1.016199759 1.227878041 1.905361045 0.951207566 1 9.635393615 -1 0.478565575 0.804285441 29.89380191 0.671325803 0.216996533 40.68737227 0.411956637 0.049523551 1184.863653 0.1 1 29.08951647 K(ac)SAPATGGVK(ac)KPHR ddPTM_HeLa_CUDC101_4h_R1 1 KSAPATGGVKKPHR 14 3 Q71DI3;P68431;Q5TEC6;Q16695 Q71DI3 HIST2H3A;HIST1H3A;HIST2H3PS2;HIST3H3 Histone H3.2;Histone H3.1;Histone H3;Histone H3.1t 0 2 K(1)SAPATGGVK(0.5)K(0.5)PHR 63.16 0.040449 5133100 6702.1 6399.7 3258.7 6036.3 5558 7950 7638.7 7484.6 1895.5 2698.1 FALSE TRUE FALSE 5916.489998 6596.867171 3434.875179 6282.486405 5147.997413 7798.366996 7933.327218 8336.61661 1817.366688 2682.051581 2.205956828 2.459634713 1.280689455 2.342418188 1.919425208 2.907612609 2.95793238 3.108298389 0.677603183 1 11.38912127 -1 0.080061015 6.00E-16 8.211523795 0.721411796 0.426825456 81.01600919 0.477165286 7.568387912 74.00266859 0.1 1 8.211523795 TVTIVVR ddPTM_HeLa_CUDC101_4h_R1 2 TVTIVVR 7 0 P50991-2;P50991 P50991-2 CCT4 T-complex protein 1 subunit delta 0 0 ; ; 128.86 0.02362 16776900 6627 6610.4 6677.6 6267.2 7110.5 5635.3 6261.9 6436.5 6950.8 6362.4 FALSE FALSE TRUE 5850.193106 6814.058589 7038.611255 6522.803505 6585.972581 5527.816042 6503.423581 7169.205143 6664.285082 6324.556162 0.924996625 1.077397119 1.112902008 1.031345653 1.04133356 0.874024343 1.028281418 1.133550712 1.053715852 1 12.62674852 -7.261416044 25 0.96458174 1.037861208 0.046447935 0.073556658 2.706859034 2899868.899 0.012283093 0.014545099 5.48E-08 7.261416044 0.073279469 SNS(ph)FSDEREFSGPSTPTGTLEFEGGEVSLEGGK ddPTM_HeLa_CUDC101_4h_R1 1 SNSFSDEREFSGPSTPTGTLEFEGGEVSLEGGK 33 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.267)NS(0.613)FS(0.106)DEREFS(0.006)GPS(0.003)T(0.003)PT(0.001)GT(0.001)LEFEGGEVSLEGGK 65.649 0.00012597 54408000 6742.8 6592.6 6265.4 5857.6 7693.9 7332.6 7008.9 8180 6930.8 6287.5 TRUE FALSE FALSE 5952.419205 6795.710192 6604.126476 6096.498247 7126.336325 7192.742872 7279.235621 9111.178135 6645.10949 6250.10167 0.95237158 1.087295943 1.056643047 0.975423852 1.140195264 1.150820139 1.164658754 1.457764788 1.063200223 1 12.60966394 -1 0.44822912 0.983214496 11.04698305 0.824579375 0.057251432 18.02643863 0.195248936 0.011256947 167.2721404 0.1 1 10.06376855 TVTNAVVTVPAYFNDSQR ddPTM_HeLa_CUDC101_4h_R1 2 TVTNAVVTVPAYFNDSQR 18 0 P11142;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PI65 P11142 HSPA8 Heat shock cognate 71 kDa protein 0 0 ; ; 255.28 1.22E-56 23695000 3015.2 2491.22 2359.82 2383.76 2527.91 2194.83 1987.4 2440.2 2620.28 2539.51 FALSE FALSE TRUE 2661.762827 2567.971535 2487.399007 2480.980036 2341.431116 2152.967275 2064.054684 2717.982504 2512.270949 2524.404882 1.054412011 1.017258188 0.985340753 0.982797987 0.927518059 0.852861318 0.817640109 1.076682478 0.995193349 1 11.3017276 -5.994884598 1.635201683 1.024347723 0.904934671 0.291322657 0.065966379 0.276032881 1.470669795 0.010000971 0.020700024 1.01E-06 5.994884598 -0.119413052 TARPFGIQAPGGTSQMERS(ph)PMLER ddPTM_HeLa_CUDC101_4h_R1 1 TARPFGIQAPGGTSQMERSPMLER 24 2 Q8N3V7-2;Q8N3V7-3;Q8N3V7 Q8N3V7-2 SYNPO Synaptopodin 1 0 TARPFGIQAPGGTS(0.004)QMERS(0.996)PMLER 61.526 0.0048257 15699000 410.61 258.15 146.81 253.36 409.71 516.93 387.94 425.02 261.72 199.23 TRUE FALSE FALSE 362.4789182 266.1032955 154.7469927 263.6931159 379.4865096 507.0704215 402.9029758 473.4025588 250.9317908 198.0449711 1.8302859 1.343650859 0.781372997 1.331480999 1.916163321 2.560380194 2.034401447 2.390379095 1.267044497 1 7.629684258 -1 0.23690346 1.209804241 8.901763923 0.566758289 0.369234342 33.93141847 0.416842505 0.279671693 103.3056374 0.1 1 7.691959682 TVVTGIEMFHK ddPTM_HeLa_CUDC101_4h_R1 2 TVVTGIEMFHK 11 0 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 ; ; 112.83 0.0026316 1889690 2945.4 1893.07 1832.09 2116.04 2255.68 2250.3 1800.35 2007.33 1583.28 1668.97 FALSE FALSE TRUE 2600.144677 1951.393243 1931.138327 2202.341258 2089.28298 2207.379277 1869.790103 2235.836333 1518.016528 1659.042892 1.567255849 1.17621627 1.164007475 1.327476986 1.259330298 1.330513688 1.127029392 1.347666383 0.914995348 1 10.69613547 -9.678443645 1.553092104 1.000573424 1.322878218 0.495806153 0.126483346 0.322382834 1.404520302 0.105251696 0.02365085 2.10E-10 9.678443645 0.322304794 TVVVEAGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TVVVEAGKK 9 1 O94842-3;O94842-2;O94842 O94842-3 TOX4 TOX high mobility group box family member 4 0 1 ; TVVVEAGK(1)K;TVVVEAGK(1)K 154.84 0.0015451 12209400 12776.4 13494.8 12171.7 17463.8 17503.9 16930.7 15789 16137.6 6540.8 5922.5 FALSE TRUE FALSE 11278.76976 13910.55879 12829.73892 18176.04925 16212.67217 16607.77511 16397.98702 17974.63915 6271.185456 5887.272707 1.91578857 2.362818827 2.179232993 3.087346239 2.753851058 2.820962428 2.785328256 3.053135136 1.065210628 1 12.52338374 -7.615425449 0.382128393 0.916477426 3.06309588 0.936506388 0.183112067 0.174688442 0.072187397 0.137383105 0.114215814 2.42E-08 7.615425449 2.146618454 TVYVELLPK ddPTM_HeLa_CUDC101_4h_R1 1 TVYVELLPK 9 0 Q4G0J3;Q4G0J3-3;D6RFF0 Q4G0J3 LARP7 La-related protein 7 0 0 97.431 0.029006 0 0 0 0 0 60.932 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 56.43716775 0 0 0 0 0 0 NSASATTPLSGNSS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 0 NSASATTPLSGNS(0.07)S(0.93)R 170.79 7.06E-07 93298000 3329.7 2836.1 3186.4 2951.9 3426.8 3181.8 3672 3396.1 2665 2784.7 TRUE FALSE FALSE 2939.397613 2923.476879 3358.666422 3072.291241 3174.011791 3121.112466 3813.63027 3782.698296 2555.147572 2768.136481 1.061868746 1.056117319 1.213331223 1.109877083 1.146624024 1.127513939 1.377688671 1.366514376 0.923056934 1 11.43469936 -1 0.256280206 1.005654295 3.597543277 0.790437579 0.063771891 13.67205965 0.171634384 0.028847942 15.59251363 0.1 1 2.591888983 TWFDK(ac)PNFNR ddPTM_HeLa_CUDC101_4h_R1 1 TWFDKPNFNR 10 1 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 0 1 TWFDK(1)PNFNR 123.79 0.0026596 429870 0 0 0 169.97 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 176.9021113 0 0 0 0 0 0 0 VKPPPQIS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 2 VKPPPQISPSK 11 1 K7ESE9;Q9H6U6-6;Q9H6U6-2;Q9H6U6;Q9H6U6-3;Q9H6U6-8;Q9H6U6-7 K7ESE9 BCAS3 Breast carcinoma-amplified sequence 3 1 0 VKPPPQIS(0.981)PS(0.019)K;VKPPPQIS(0.97)PS(0.03)K ; 93.237 0.011451 63458000 5174.5 4106.5 4324 4544.9 4644.5 4283.1 3758.7 3739.1 4893.3 4779 TRUE FALSE FALSE 4567.952954 4233.016398 4557.768519 4730.260667 4301.884488 4201.407004 3903.674318 4164.74403 4691.596103 4750.574295 0.96155805 0.891053615 0.959414217 0.995723964 0.905550407 0.88439981 0.821726822 0.876682222 0.987585039 1 12.21388622 -1 0.182569261 1.007283918 0.258344027 0.624042065 0.035292353 24.8310899 0.271731506 0.043932302 5.212493562 0.1 1 -0.748939891 VSDQNS(ph)PVLPKK ddPTM_HeLa_CUDC101_4h_R1 1 VSDQNSPVLPKK 12 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 VS(0.004)DQNS(0.996)PVLPKK 67.415 0.032997 51893000 7015.8 6014 6754.1 5785.2 8606.6 7650.8 7490.6 8424.5 6182.8 4536.4 TRUE FALSE FALSE 6193.418559 6199.284212 7119.247076 6021.145462 7971.708265 7504.873737 7779.514951 9383.511027 5927.942367 4509.417291 1.373440992 1.374741749 1.578751004 1.33523803 1.767791213 1.664266856 1.725170781 2.080869971 1.314569485 1 12.1387253 -1 0.101289801 0.662716406 4.452901671 0.760650993 0.141085136 26.28936895 0.189468197 0.812772288 13.91934646 0.1 1 3.790185265 up GADNDGSGS(ph)ESGYTTPK ddPTM_HeLa_CUDC101_4h_R1 2 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 0 GADNDGS(0.015)GS(0.748)ES(0.237)GYTTPK;GADNDGS(0.099)GS(0.892)ES(0.007)GYT(0.002)TPK ; 239.8 7.87E-44 772710000 7728.5 6636.3 6626.9 6761.5 7256.4 6144 6100.7 5414.3 7562.2 7330.3 TRUE FALSE FALSE 6822.576946 6840.756537 6985.170259 7037.263196 6721.109829 6026.813437 6336.006043 6030.642027 7250.482915 7286.69905 0.936305575 0.938800476 0.958619289 0.965768333 0.922380598 0.827097894 0.869530359 0.827623316 0.99502983 1 12.83104969 -1 0.210021318 0.992445018 0.112702177 0.807108907 0.026271978 17.95040801 0.210604925 0.024926959 5.320789405 0.1 1 -0.879742841 AYSGS(ph)DLPSSSSGGANGTAGGGGGAR ddPTM_HeLa_CUDC101_4h_R1 1 AYSGSDLPSSSSGGANGTAGGGGGAR 26 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 AYS(0.305)GS(0.695)DLPSSSSGGANGTAGGGGGAR 225.88 3.28E-39 33637000 2717.4 2323.8 2518.4 2652.3 2876.1 2507.9 2784.1 2797 2407.3 2416.6 TRUE FALSE FALSE 2398.870491 2395.393524 2654.552322 2760.472258 2663.935833 2460.065986 2891.48367 3115.399174 2308.070075 2402.225956 0.998603185 0.997155791 1.105038565 1.149130976 1.108944738 1.024077681 1.203668482 1.296880157 0.960804736 1 11.23015614 -1 0.302406985 0.992619624 3.507082633 0.742343436 0.052162256 18.50867971 0.236769006 0.019970693 25.59718051 0.1 1 2.514463009 TYADYESVNECMEGVCK ddPTM_HeLa_CUDC101_4h_R1 1 TYADYESVNECMEGVCK 17 0 P84090;G3V279 P84090 ERH Enhancer of rudimentary homolog 0 0 115.29 0.0029024 14777000 1864.7 1571.7 1565.7 1612.3 2021 1621.4 1668.4 1911.8 1619.1 554.86 FALSE FALSE TRUE 1646.122693 1620.122214 1650.346478 1678.056563 1871.914856 1590.474496 1732.750747 2129.431584 1552.360013 551.559668 2.984487061 2.937347141 2.992144955 3.04238446 3.393857392 2.883594629 3.141547229 3.860745641 2.814491528 1 9.107373156 -9.543070504 0.372057723 2.47E-11 3.31879493 0.210540697 0.620683315 0.592163364 0.091479352 0.812064921 0.088847661 2.86E-10 9.543070504 3.31879493 LSSS(ph)TVAISYSPDR ddPTM_HeLa_CUDC101_4h_R1 1 LSSSTVAISYSPDR 14 0 Q96T17;Q96T17-2;Q96T17-5 Q96T17 MAP7D2 MAP7 domain-containing protein 2 1 0 LS(0.178)S(0.11)S(0.683)T(0.029)VAISYSPDR 172.85 6.97E-12 0 1411.4 1133.5 1218.3 1303.7 1591.1 2084.4 2032.2 2668.6 1028.5 986.69 TRUE FALSE FALSE 1245.957832 1168.421791 1284.164983 1356.870521 1473.727723 2044.643543 2110.582635 2972.382637 986.1047947 980.821124 1.270321164 1.191268992 1.309275414 1.383402629 1.502544844 2.084624294 2.151852752 3.030504303 1.005386987 1 9.937846241 -1 0.378749403 1.086375841 28.79442057 0.972615721 0.100869227 6.456876468 0.078512273 0.027556725 132.7550237 0.1 1 27.70804473 up TYDATTHFETTCDDIK ddPTM_HeLa_CUDC101_4h_R1 1 TYDATTHFETTCDDIK 16 0 P50395-2;P50395 P50395-2 GDI2 Rab GDP dissociation inhibitor beta 0 0 85.28 0.011007 17745000 2888.9 2716.2 2833.2 2764.2 3464.8 3053.2 3177 3336.8 2924.2 2743.4 FALSE FALSE TRUE 2550.267521 2799.882903 2986.371362 2876.936024 3209.208607 2994.965297 3299.537954 3716.647824 2803.663238 2727.082135 0.935163444 1.02669548 1.095079361 1.054950266 1.176792061 1.098230691 1.209915137 1.362866111 1.0280817 1 11.41314244 -1.605244031 0.317140728 0.963802503 3.500569641 0.828838854 0.048395203 9.186245672 0.167606977 0.017831394 12.76819495 0.024817382 1.605244031 2.536767138 TYDPSGDSTLPTCSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 TYDPSGDSTLPTCSKK 16 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 0 1 ; TYDPSGDSTLPTCSK(1)K;TYDPSGDSTLPTCSK(1)K 252.99 9.09E-51 1883570 494.04 471.709 550.663 505.13 537.06 461.79 653.257 486.97 367.23 251.85 FALSE TRUE FALSE 436.1293801 486.2417952 580.4335074 525.7313848 497.4421538 452.9821251 678.4533413 542.4046964 352.092624 250.351985 1.742064798 1.942232634 2.318469763 2.099968909 1.986971079 1.809381001 2.709997851 2.166568387 1.406390383 1 7.967814084 -8.429231888 0.332087219 0.754456384 2.319350961 0.673389062 0.257814974 0.6088484 0.144988869 0.375871915 0.140736521 3.72E-09 8.429231888 1.564894577 TYEDMTLEELEDHEDEFNEEDER ddPTM_HeLa_CUDC101_4h_R1 4 TYEDMTLEELEDHEDEFNEEDER 23 0 Q9H2J4 Q9H2J4 PDCL3 Phosducin-like protein 3 0 0 ;;; ;;; 246.1 1.07E-58 62671500 6848.48 6028.36 5163.98 5317.97 5894.26 5677.17 5342.02 5167.59 6613.24 6666.24 FALSE FALSE TRUE 6045.711556 6214.086626 5443.160379 5534.859803 5459.452183 5568.887441 5548.063501 5755.847557 6340.639448 6626.588908 0.912341423 0.937750434 0.82141211 0.835250214 0.823870661 0.84038523 0.837242747 0.868598858 0.956848167 1 12.69405071 -7.701332197 0.500062149 0.994658762 0.83153987 0.779241084 0.028458416 0.23331401 0.143859964 0.013815454 0.011080314 1.99E-08 7.701332197 -0.163118893 TYEEGLK(ac)HEANNPQLK ddPTM_HeLa_CUDC101_4h_R1 1 TYEEGLKHEANNPQLK 16 1 P31948;P31948-2;F5GXD8;F5H783 P31948 STIP1 Stress-induced-phosphoprotein 1 0 1 TYEEGLK(1)HEANNPQLK 127.18 0.0071197 2392400 1208 796.91 756.98 554.8 1209.8 1220 1574.9 1213 1291.5 878.41 FALSE TRUE FALSE 1066.400071 821.4618525 797.9046285 577.4271421 1120.555464 1196.730533 1635.644421 1351.083017 1238.263823 873.1851783 1.221275965 0.940764769 0.913786272 0.6612883 1.283296478 1.370534639 1.873193065 1.547304112 1.418099911 1 9.770143832 -5.138365601 2.266676256 1.051168833 1.701471577 0.597933578 0.213331634 0.142213279 1.403905195 0.028039935 0.092371257 7.27E-06 5.138365601 0.650302743 TEARSS(ph)DEENGPPS(ph)SPDLDR ddPTM_HeLa_CUDC101_4h_R1 2 TEARSSDEENGPPSSPDLDR 20 1 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 2 0 T(0.138)EARS(0.385)S(0.476)DEENGPPS(0.552)S(0.448)PDLDR;T(0.103)EARS(0.219)S(0.678)DEENGPPS(0.549)S(0.451)PDLDR ; 106.1 0.00023506 142150000 2545.83 2729.48 2513.03 2283.95 3127 2857.4 2384.28 2886.4 2954.25 2738.8 TRUE FALSE FALSE 2247.411667 2813.572044 2648.892003 2377.099353 2896.32744 2802.899856 2476.242478 3214.976109 2832.474565 2722.509496 0.825492682 1.033448018 0.972959693 0.87312803 1.063844752 1.029528037 0.909544111 1.180887014 1.040391069 1 11.41072137 -1 0.5710934 0.929988104 11.36645736 0.207642656 0.086933995 125.3425644 0.981334791 0.016470478 1623.270641 0.1 1 10.43646926 AS(ph)PPGDLQNPKR ddPTM_HeLa_CUDC101_4h_R1 1 ASPPGDLQNPKR 12 1 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 0 AS(1)PPGDLQNPKR 66.784 0.033849 12213000 2646 2681.9 2829.7 3277.1 3698.9 3209.1 2881.2 4282.1 3148.3 2355.2 TRUE FALSE FALSE 2335.839891 2764.52616 2982.682141 3410.754303 3426.039516 3147.891764 2992.328849 4769.556955 3018.525741 2341.191166 0.997714294 1.180820345 1.274001963 1.456845709 1.463374528 1.344568445 1.27812239 2.037235158 1.289311948 1 11.19302702 -1 0.218660362 0.93231822 5.487897814 0.541460711 0.189515791 19.52301552 0.232976232 0.123857559 31.6191458 0.1 1 4.555579594 TYLEEELDKWAK ddPTM_HeLa_CUDC101_4h_R1 2 TYLEEELDKWAK 12 1 B8ZZA3;A0A087X297;Q16719-2;Q16719;A0A087WYM2 B8ZZA3 KYNU Kynureninase 0 0 ; ; 123.62 0.0034359 27022000 2304.6 2037.94 2281.2 2273.8 2823.4 2362.69 1908.63 2715 3235.8 2575.9 FALSE FALSE TRUE 2034.458282 2100.726516 2404.528572 2366.535392 2615.123407 2317.625625 1982.246498 3024.064626 3102.418954 2560.578432 0.794530742 0.820410923 0.939056794 0.92421906 1.021301818 0.905117998 0.774140121 1.181008395 1.211608641 1 11.32225404 -6.549464301 24.80381625 0.893386991 0.949059938 0 0.148287996 546.1614555 509555.9705 0.018794754 0.026580123 2.82E-07 6.549464301 0.055672947 KLGDVS(ph)PTQIDVSQFGSFKEDTK ddPTM_HeLa_CUDC101_4h_R1 1 KLGDVSPTQIDVSQFGSFKEDTK 23 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KLGDVS(0.878)PT(0.122)QIDVSQFGSFKEDTK 95.206 0.00011603 513390000 2744.7 2640.9 2723.9 2551.2 3200.8 2934.7 3027.7 3811.1 3032 2693.5 TRUE FALSE FALSE 2422.970427 2722.262999 2871.162273 2655.248963 2964.683361 2878.725487 3144.479403 4244.940219 2907.019677 2677.478942 0.904944718 1.016726203 1.072337947 0.991697422 1.107266733 1.075162699 1.174417977 1.585424315 1.085730174 1 11.38665951 -1 0.644452583 0.968871278 52.27343278 0.868306008 0.063843525 41.45122124 0.25306878 0.01028089 3036.808276 0.1 1 51.3045615 TASFS(ph)ESRADEVAPAK ddPTM_HeLa_CUDC101_4h_R1 1 TASFSESRADEVAPAK 16 1 P53396;P53396-2;P53396-3 P53396 ACLY ATP-citrate synthase 1 0 TAS(0.35)FS(0.638)ES(0.011)RADEVAPAK 140.22 0.0016531 110710000 1801.5 1385.5 1954.6 1621.9 1945.2 2118.8 2486.6 3430.7 1795.4 1384.3 TRUE FALSE FALSE 1590.330901 1428.185613 2060.271588 1688.048092 1801.706471 2078.38742 2582.508995 3821.237021 1721.392852 1376.066122 1.1557082 1.037875717 1.497218451 1.226720188 1.309316785 1.510383394 1.876733213 2.776928346 1.250952134 1 10.42633408 -1 0.533898956 1.085463667 68.65445802 0.931397137 0.131351047 17.10386314 0.149750739 0.023588394 1323.150197 0.1 1 67.56899435 up (ac)S(ph)GDEMIFDPTMSKK ddPTM_HeLa_CUDC101_4h_R1 11 SGDEMIFDPTMSKK 14 1 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 0 S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(0.999)GDEMIFDPTMSKK;S(0.999)GDEMIFDPT(0.001)MSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK ;;;;;;;;;; 99.568 0.00032818 1824279800 46088.84 49360.1 44804.18 43975.2 57437.25 48516.14 50316.68 57534.32 50977.38 34033.6 TRUE FALSE FALSE 40686.37604 50880.82617 47226.4295 45768.69873 53200.2185 47590.77546 52257.4112 64083.79443 48876.07082 33831.16663 1.202630003 1.503963098 1.395944456 1.352856058 1.572520956 1.406713992 1.544652946 1.894223605 1.44470545 1 15.04606531 -1 0.099233805 0.682923331 3.76731382 0.359454298 0.178758454 35.50782471 0.251584692 0.922505312 14.97924996 0.1 1 3.084390489 PY(ph)IRHEPIGY(ph)DRS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 PYIRHEPIGYDRSR 14 2 E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830;F5GXF5;Q12830-2;A0A0A0MR81 E7ETD6 BPTF Nucleosome-remodeling factor subunit BPTF 3 0 PY(1)IRHEPIGY(1)DRS(1)R 47.904 0.03565 38608000 503.33 532.18 578.16 556.02 696.79 465.25 674.07 686.78 738.34 493.26 TRUE FALSE FALSE 444.3304204 548.575835 609.4170784 578.6968989 645.3891899 456.3761314 700.0691057 764.9602591 707.9053127 490.3260676 0.906193755 1.118798023 1.242881255 1.180228703 1.316244908 0.930760491 1.427762365 1.560105223 1.443743989 1 8.937597653 -1 0.273432377 0.94623142 5.213334442 0.07630873 0.2062437 23.94792513 0.304279227 0.065419278 49.07126071 0.1 1 4.267103022 GRTSS(ph)TNEDEDLNPEQK ddPTM_HeLa_CUDC101_4h_R1 2 GRTSSTNEDEDLNPEQK 17 1 Q99081;Q99081-3;B4DGI9;Q99081-4;Q99081-2;B4DZP2;F5GY10 Q99081 TCF12 Transcription factor 12 1 0 GRT(0.112)S(0.112)S(0.388)T(0.388)NEDEDLNPEQK;GRT(0.008)S(0.008)S(0.492)T(0.492)NEDEDLNPEQK ; 181.54 4.92E-11 62933000 8102 8366.4 7639.7 8411.9 10024.5 9067.8 9641.6 10997.5 8014.4 4890.9 TRUE FALSE FALSE 7152.295842 8624.158867 8052.725291 8754.973641 9285.012607 8894.846823 10013.47974 12249.41095 7684.04304 4861.808709 1.471118316 1.773858122 1.656322939 1.800764729 1.909785671 1.829534512 2.059620265 2.519517258 1.580490616 1 12.24727742 -1 0.084140805 0.243298426 5.907142081 0.671135885 0.214555398 29.19985555 0.179672295 1.764716384 19.25186537 0.1 1 5.663843655 S(ph)NSGRELTDEEILASVMIK ddPTM_HeLa_CUDC101_4h_R1 1 SNSGRELTDEEILASVMIK 19 1 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 S(0.5)NS(0.5)GRELTDEEILASVMIK 133.98 2.47E-05 91022000 4628.4 4750.9 4484.4 4135.9 5463.4 4377.8 4853.1 5232.2 4973.1 4565.1 TRUE FALSE FALSE 4085.865968 4897.269598 4726.840229 4304.579879 5060.375867 4294.300759 5040.285693 5827.812499 4768.106713 4537.946582 0.900377714 1.079181852 1.041625357 0.948574383 1.1151246 0.946309235 1.110697449 1.284239996 1.050719004 1 12.14782391 -1 0.623288614 0.96877546 24.01682089 0.53198421 0.071616333 83.99255219 0.552989201 0.012348235 2660.542176 0.1 1 23.04804543 DHFGLEGDEESTMLEDS(ph)VSPKK ddPTM_HeLa_CUDC101_4h_R1 1 DHFGLEGDEESTMLEDSVSPKK 22 1 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 DHFGLEGDEES(0.019)T(0.019)MLEDS(0.936)VS(0.025)PKK 88.709 0.00028733 40215000 2949.3 2600.4 2450.3 2215.7 2905.3 2360.9 2232.2 1849.3 2763.8 2901.6 TRUE FALSE FALSE 2603.587525 2680.515242 2582.77063 2306.065823 2690.981807 2315.869766 2318.296702 2059.816837 2649.874994 2884.341154 0.902662822 0.929333632 0.895445612 0.799512159 0.932962387 0.802911182 0.8037526 0.714137727 0.91871067 1 11.4940261 -1 0.139884884 1.028472429 0.035744802 0.695975497 0.045005579 23.93857615 0.221300606 0.106746072 4.770324088 0.1 1 -0.992727627 TYSAK(ac)LDNAR ddPTM_HeLa_CUDC101_4h_R1 2 TYSAKLDNAR 10 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 ; TYSAK(1)LDNAR;TYSAK(1)LDNAR 143.96 0.00043173 6930500 3120.1 2335.3 1658.32 2560.4 2506.3 2117.7 2014.88 2106.6 1930.54 1335.02 FALSE TRUE FALSE 2754.366608 2407.247825 1747.973795 2664.824179 2321.415242 2077.308401 2092.594597 2346.406829 1850.962324 1327.079242 2.075510279 1.813944299 1.317158569 2.00803697 1.749266486 1.565323558 1.576842234 1.768098509 1.394763979 1 10.3740388 -9.480279726 1.211137355 0.998458472 1.758718037 0.417924412 0.237069113 0.251553595 0.658080327 0.159137323 0.038648241 3.31E-10 9.480279726 0.760259565 WLREAEEES(ph)DHN ddPTM_HeLa_CUDC101_4h_R1 1 WLREAEEESDHN 12 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 0 WLREAEEES(1)DHN 72.815 0.028196 5900200 1686 2604.1 2233.4 2710.3 5970.9 2986.3 3870.4 6972.9 2410.3 936.4 TRUE FALSE FALSE 1488.369636 2684.329234 2354.14436 2820.837749 5530.438603 2929.341303 4019.682624 7766.666751 2310.946414 930.8302512 1.598969988 2.883801027 2.529080202 3.030453453 5.941404027 3.147019878 4.318384173 8.343805695 2.482672228 1 9.862374288 -1 0.225915987 0.769253357 36.16258565 0.687752372 1.154027544 16.05375953 0.19400823 0.712674139 211.0142971 0.1 1 35.39333229 AVAGVMIT(ph)ASHNR ddPTM_HeLa_CUDC101_4h_R1 1 AVAGVMITASHNR 13 0 Q6PCE3 Q6PCE3 PGM2L1 "Glucose 1,6-bisphosphate synthase" 1 0 AVAGVMIT(0.584)AS(0.416)HNR 135.72 0.0012727 19502000 5029.6 3202.8 3348.6 4150.5 4310.3 4796.9 4927.3 5419.5 2710.3 3153.5 TRUE FALSE FALSE 4440.037912 3301.474472 3529.635445 4319.77533 3992.337756 4705.407125 5117.347612 6036.433974 2598.580287 3134.742842 1.41639622 1.053188296 1.125972886 1.378031803 1.273577438 1.501050441 1.632461695 1.925655238 0.828961232 1 11.61413138 -1 0.38099705 1.160261273 12.33634518 0.746687874 0.156265121 24.78199086 0.300493168 0.041412965 207.1164513 0.1 1 11.17608391 VELS(ph)PGPPKPAGR ddPTM_HeLa_CUDC101_4h_R1 4 VELSPGPPKPAGR 13 1 A0A087WXE2;Q8IZ73-2;Q8IZ73 A0A087WXE2 RPUSD2 RNA pseudouridylate synthase domain-containing protein 2 1 0 VELS(1)PGPPKPAGR;VELS(1)PGPPKPAGR;VELS(1)PGPPKPAGR;VELS(1)PGPPKPAGR ;;; 156.52 0.00043427 91712000 13630.1 12173 11512 12669.7 12199.6 11182.9 10568.2 9627.3 12859.9 13243.6 TRUE FALSE FALSE 12032.40034 12548.0357 12134.37354 13186.42513 11299.65981 10969.60481 10975.81901 10723.23292 12329.80948 13164.82648 0.913980929 0.953148583 0.921726812 1.001640633 0.858321971 0.833250999 0.833723029 0.814536594 0.936572123 1 13.68440089 -1 0.192595797 0.991086811 0.106086199 0.653197443 0.038437664 23.64806916 0.266242004 0.042631643 6.28966845 0.1 1 -0.885000612 S(ph)ESELIDELSEDFDRSECK ddPTM_HeLa_CUDC101_4h_R1 2 SESELIDELSEDFDRSECK 19 1 P20810-6;P20810-9;P20810-7;P20810-10;A0A0C4DGB5;P20810-5;B7Z574;E7ES10;P20810;P20810-8;P20810-4;E9PDE4;P20810-2;E9PCH5;P20810-3;H0Y7F0;E7EQ12;E7EQA0;D6RC54;E7EVY3;H0Y9H6;A0A0A0MR45;H0YD33 P20810-6;E7EVY3 CAST Calpastatin 1 0 S(0.994)ES(0.006)ELIDELSEDFDRSECK;S(0.99)ES(0.01)ELIDELSEDFDRSECK ; 171.83 9.02E-08 321590000 1786.84 1626.26 1397.97 1704.38 1641.94 1756.15 1670.03 1641.51 1840.93 1441.62 TRUE FALSE FALSE 1577.389324 1676.363143 1473.548487 1773.891983 1520.817357 1722.654365 1734.443617 1828.372863 1765.046086 1433.04518 1.100725466 1.169790853 1.028263803 1.237847912 1.061248716 1.202093548 1.210320261 1.275865471 1.231675114 1 10.48486838 -1 0.096324104 0.904132836 1.88734983 0.010436385 0.091479096 58.1572954 0.401921335 0.50406967 7.587724985 0.1 1 0.983216994 RNSSS(ph)PVSPASVPGQR ddPTM_HeLa_CUDC101_4h_R1 2 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 RNS(0.019)S(0.253)S(0.728)PVSPASVPGQR;RNS(0.017)S(0.25)S(0.733)PVSPASVPGQR ; 108.12 0.0010626 52718000 2921.6 2550.2 2725.4 2692.8 3557.8 2287.79 2669.9 3458.8 3146.2 2229 TRUE FALSE FALSE 2579.134477 2628.768639 2872.743368 2802.624023 3295.348182 2244.154217 2772.878937 3852.535811 3016.512304 2215.741809 1.16400497 1.186405667 1.296515396 1.264869405 1.487243761 1.012822978 1.251444968 1.738711521 1.361400634 1 11.11357406 -1 0.105527088 0.853018222 2.654504796 0.122916214 0.194917876 78.70241045 0.586622399 1.082520219 20.67549947 0.1 1 1.801486574 SPQLSLS(ph)PRPASPK ddPTM_HeLa_CUDC101_4h_R1 1 SPQLSLSPRPASPK 14 1 B9EGQ5;A0A669KBG4;M0QXA7;A0A669KBH9;A0A2R8YFV2;A0A669KAV7;O95785-4;O95785-3;O95785 B9EGQ5 WIZ Protein Wiz 1 0 SPQLS(0.002)LS(0.977)PRPAS(0.022)PK 103.3 0.02969 13787000 1976.5 1917.2 1853.7 1737.1 2371.4 2127.4 1882.5 2239.5 2322 1933.2 TRUE FALSE FALSE 1744.817666 1976.26666 1953.916629 1807.946446 2196.466546 2086.823389 1955.108656 2494.435628 2226.286177 1921.70124 0.907954696 1.02839433 1.016763994 0.940805162 1.142980241 1.085924984 1.017384292 1.298035082 1.158497549 1 10.90816835 -1 0.421898205 0.961534687 6.350053514 0.316817566 0.090365903 33.35473267 0.380016983 0.015716026 153.4105516 0.1 1 5.388518828 SLQTLPT(ph)DSSTFDTDTFCPPRPKPVAR ddPTM_HeLa_CUDC101_4h_R1 1 SLQTLPTDSSTFDTDTFCPPRPKPVAR 27 2 B0QY95;Q9NQG6 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 0 S(0.002)LQT(0.006)LPT(0.736)DS(0.084)S(0.084)T(0.084)FDT(0.003)DT(0.001)FCPPRPKPVAR 56.335 0.013675 20664000 1077.3 1013.8 845.26 987.44 1113.6 1191 1146.2 1164.7 1188.1 740.16 TRUE FALSE FALSE 951.0205271 1045.033976 890.9573124 1027.712071 1031.451947 1168.283659 1190.409318 1297.28474 1139.126015 735.7574954 1.292573345 1.420351111 1.210938819 1.396808157 1.401891184 1.587865114 1.617937059 1.763196091 1.548235692 1 9.523086524 -1 0.107699911 0.790193495 3.617413926 0.282361765 0.17742124 23.06508794 0.174787389 0.481317538 9.718134502 0.1 1 2.82722043 GRLT(ph)PS(ph)PDIIVLSDNEASSPR ddPTM_HeLa_CUDC101_4h_R1 2 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 0 GRLT(1)PS(1)PDIIVLSDNEASSPR;GRLT(1)PS(1)PDIIVLSDNEASSPR ; 171.75 3.21E-09 40726000 5309.9 5178.1 4725.5 5717.8 5846.5 5327.1 5389 6056.5 4050.5 4243.8 TRUE FALSE FALSE 4687.481571 5337.631123 4980.974824 5950.996598 5415.215343 5225.494443 5596.855535 6745.947479 3883.536676 4218.557689 1.111157395 1.265273944 1.180729337 1.410670906 1.283665115 1.238692185 1.326722531 1.599112298 0.920583991 1 12.04253412 -1 0.118058174 0.858463742 2.835662439 0.780780047 0.087280077 31.89338855 0.259942075 0.396287084 10.39271677 0.1 1 1.977198697 RRGS(ph)SGSVDETLFALPAASEPVIR ddPTM_HeLa_CUDC101_4h_R1 2 RRGSSGSVDETLFALPAASEPVIR 24 2 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 0 RRGS(0.333)S(0.333)GS(0.333)VDETLFALPAASEPVIR;RRGS(0.332)S(0.332)GS(0.332)VDET(0.004)LFALPAASEPVIR ; 85.913 5.24E-05 19638000 2268.68 2480.3 1895.4 2271.15 2700.1 2697.15 2534.94 2940.7 2311.24 1949.24 TRUE FALSE FALSE 2002.748769 2556.715103 1997.871057 2363.777314 2500.919002 2645.706358 2632.713485 3275.457401 2215.969709 1937.645834 1.033598986 1.319495575 1.031081647 1.219922275 1.290699755 1.365423088 1.358717594 1.690431422 1.143640221 1 10.92008918 -1 0.24975922 0.98134332 5.130185491 0.74784965 0.099781662 12.39330491 0.154605418 0.045895298 21.85189023 0.1 1 4.148842171 SGMS(ph)PEQSR ddPTM_HeLa_CUDC101_4h_R1 1 SGMSPEQSR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 S(0.02)GMS(0.979)PEQS(0.001)R 96.067 0.021429 861620000 5037.9 3887.8 4418.5 4465.4 4669.4 3924.2 3809.6 3747.7 4607 4672.8 TRUE FALSE FALSE 4447.364999 4007.57851 4657.377475 4647.518313 4324.947665 3849.352423 3956.537548 4174.323019 4417.09751 4645.005978 0.957450867 0.862771443 1.002663398 1.000540868 0.931096254 0.828707744 0.851783091 0.898669031 0.950934731 1 12.18146474 -1 0.161950208 1.010649769 0.38706544 0.314956857 0.051158415 44.59155502 0.454621294 0.089384324 6.685771531 0.1 1 -0.623584329 GT(ph)S(ph)T(ph)RS(ph)TLFEVIVS(ph)ASRTK ddPTM_HeLa_CUDC101_4h_R1 1 GTSTRSTLFEVIVSASRTK 19 2 Q8IY57-5;G3V219 Q8IY57-5 YAF2 YY1-associated factor 2 5 0 GT(0.826)S(0.851)T(0.851)RS(0.851)T(0.621)LFEVIVS(0.601)AS(0.324)RT(0.075)K 56.335 0.024537 43640000 2612 1920.8 1774.8 1949.8 2579.7 2263.7 1989.3 1277 2094.6 2482.6 TRUE FALSE FALSE 2305.82532 1979.977571 1870.751056 2029.321272 2389.40067 2220.523694 2066.027967 1422.368518 2008.259701 2467.833385 0.934352106 0.80231412 0.758054036 0.822308866 0.968217986 0.899786715 0.837182923 0.576363269 0.813774428 1 11.26902928 -1 0.108176938 1.087967861 0.030449042 0.106453773 0.109075869 79.51281057 0.604704487 0.616053603 12.59074738 0.1 1 -1.057518819 VAAAPDEDLDGDDEDDAEDENNIDNR ddPTM_HeLa_CUDC101_4h_R1 2 VAAAPDEDLDGDDEDDAEDENNIDNR 26 0 Q9BXV9 Q9BXV9 C14orf142 Uncharacterized protein C14orf142 0 0 ; ; 210.33 5.46E-30 54511000 5497.2 5190 4544.1 5505.9 5622.7 4876.4 4478.5 4850.4 5670.4 4957.8 FALSE FALSE TRUE 4852.826549 5349.897748 4789.767791 5730.454401 5207.924623 4783.390795 4651.237245 5402.54993 5436.663712 4928.310785 0.984683548 1.085543908 0.971888341 1.162762385 1.056736243 0.970594389 0.943779207 1.096227524 1.103149527 1 12.26687752 (ac)S(ph)DQEAKPSTEDLGDKKEGEYIK ddPTM_HeLa_CUDC101_4h_R1 1 SDQEAKPSTEDLGDKKEGEYIK 22 3 B8ZZJ0;B9A032;B8ZZN6;P63165 B8ZZJ0 SUMO1 Small ubiquitin-related modifier 1 1 0 S(0.783)DQEAKPS(0.109)T(0.109)EDLGDKKEGEYIK 55.972 0.00045572 360110000 2726 2810.5 2920 3127.3 4429.2 3098.6 3433.3 4746.6 3078.4 1717.8 TRUE FALSE FALSE 2406.462412 2897.088174 3077.864033 3254.844811 4102.46674 3039.499368 3565.723531 5286.933758 2951.507049 1707.582449 1.409280362 1.69660222 1.802468767 1.906112828 2.402499945 1.780001527 2.088170637 3.096151381 1.728471179 1 10.73773952 -1 0.135098035 0.669727645 7.634795217 0.586754239 0.343991087 22.9150895 0.206639684 0.771402299 30.7329969 0.1 1 6.965067572 CLLADLPLPPELPGGDDLSKS(ph)PEEKK ddPTM_HeLa_CUDC101_4h_R1 1 CLLADLPLPPELPGGDDLSKSPEEKK 26 2 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28;A0A2R8YF61;Q9BVE2;A0A087X209 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 1 0 CLLADLPLPPELPGGDDLS(0.172)KS(0.828)PEEKK 81.89 1.23E-05 17710000 3089.2 2439.9 2126.1 2860.1 2862.7 2818.8 2616.2 2678.5 3094.2 2662 TRUE FALSE FALSE 2727.088659 2515.070427 2241.043397 2976.74724 2651.524324 2765.036086 2717.10771 2983.409613 2966.655766 2646.166306 1.030580978 0.950458186 0.846901947 1.124928253 1.002024823 1.044921508 1.026809126 1.127445999 1.121114633 1 11.36968802 -1 0.73224766 1.003771031 19.60714207 0.161482999 0.075796419 373.7683884 1.62850562 0.010574889 11454.90975 0.1 1 18.60337103 VEK(ac)LPPLYK ddPTM_HeLa_CUDC101_4h_R1 2 VEKLPPLYK 9 1 A0A3B3IRW6;Q2KHR3 A0A3B3IRW6 QSER1 Glutamine and serine-rich protein 1 0 1 ; VEK(1)LPPLYK;VEK(1)LPPLYK 113.22 0.0032558 823600 1310.32 1266.64 1178.02 1257.77 1620.44 1652.03 1895.43 2278.37 1028.43 1079.94 FALSE TRUE FALSE 1156.726276 1305.663677 1241.707325 1309.067297 1500.90337 1620.52028 1968.53737 2537.730431 986.0376801 1073.516469 1.07751144 1.216249322 1.156672823 1.219419855 1.398118625 1.50954394 1.833728151 2.363941779 0.918511927 1 10.06812861 -1 0.399186386 1.025360041 23.11429931 0.982723204 0.054849535 4.113126516 0.048635952 0.010693769 72.20152757 0.1 1 22.08893927 up QAHDLS(ph)PAAESSSTFSFSGR ddPTM_HeLa_CUDC101_4h_R1 3 QAHDLSPAAESSSTFSFSGR 20 0 O95425-3;O95425;A0A6I8PIX7;O95425-2;O95425-4 O95425-3 SVIL Supervillin 1 0 QAHDLS(0.994)PAAES(0.001)S(0.001)S(0.001)T(0.001)FSFS(0.001)GR;QAHDLS(1)PAAESSSTFSFSGR;QAHDLS(1)PAAESSSTFSFSGR ;; 77.838 0.0031428 196537200 7206.69 5522.19 5748.64 5957.27 7826.45 7242.31 6690.99 7436.76 7069.68 5919.23 TRUE FALSE FALSE 6361.932723 5692.322128 6059.428867 6200.23322 7249.108376 7104.175003 6949.063726 8283.330698 6778.264798 5884.022157 1.081221748 0.96742024 1.029810681 1.053740631 1.231998824 1.20736714 1.181005703 1.407766741 1.151978123 1 12.52258696 -1 0.351999869 1.02131162 5.380147997 0.698801837 0.069023886 17.9512937 0.224465578 0.017187401 52.7179638 0.1 1 4.358836377 ASLVALPEQTAS(ph)EEETPPPLLTK ddPTM_HeLa_CUDC101_4h_R1 2 ASLVALPEQTASEEETPPPLLTK 23 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 ASLVALPEQT(0.039)AS(0.956)EEET(0.005)PPPLLTK;ASLVALPEQT(0.252)AS(0.748)EEET(0.001)PPPLLTK ; 133.61 1.03E-07 42061000 10841.8 10871.1 9274.5 9536 11405.9 11090 10871.6 12080.3 11975.3 10474.9 TRUE FALSE FALSE 9570.940639 11206.02571 9775.907524 9924.919298 10564.50948 10878.47673 11290.92125 13455.47252 11481.67307 10412.59483 0.919169601 1.07619915 0.938854117 0.953164841 1.01458951 1.044742152 1.08435231 1.29223049 1.102671645 1 13.34604201 -1 0.691540098 0.967485536 39.68609493 0.658172111 0.060023023 75.39155717 0.385948382 0.007605212 4513.650208 0.1 1 38.71860939 VAAYDK(ac)LEK ddPTM_HeLa_CUDC101_4h_R1 2 VAAYDKLEK 9 1 P35579 P35579 MYH9 Myosin-9 0 1 ; VAAYDK(1)LEK;VAAYDK(1)LEK 113.26 0.0032439 3424900 7422.2 2468 1447.77 2207.7 4682.4 4959.2 5038.9 3543.9 2740 1363.72 FALSE TRUE FALSE 6552.180967 2544.036155 1526.040825 2297.739548 4336.988681 4864.611523 5233.252061 3947.323251 2627.05604 1355.608533 4.833387227 1.87667464 1.125723827 1.694987523 3.199292846 3.5885076 3.86044491 2.911845976 1.937916424 1 10.40472491 -9.69096841 1.576052198 1.002871861 3.1504706 0.16427884 1.101737794 0.416909987 1.870490868 0.918751681 0.204869413 2.04E-10 9.69096841 2.147598738 TLTEPSVDFNHS(ph)DDFTPISTVQK ddPTM_HeLa_CUDC101_4h_R1 1 TLTEPSVDFNHSDDFTPISTVQK 23 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 0 T(0.015)LT(0.055)EPS(0.283)VDFNHS(0.646)DDFTPISTVQK 90.017 0.00016152 84752000 3409.7 2608.3 2801.9 2918.8 3501.4 2972.8 3378.6 2868.3 2505.6 2683.3 TRUE FALSE FALSE 3010.020135 2688.658631 2953.379189 3037.84128 3243.108698 2916.098793 3508.913734 3194.815678 2402.318107 2667.339612 1.128472775 1.007992615 1.107237779 1.138903073 1.215858934 1.093261158 1.315510675 1.197753621 0.900642009 1 11.38118581 -1 0.115446164 0.95290564 1.874024371 0.606141149 0.07126273 50.66578907 0.405792354 0.305398842 7.502031172 0.1 1 0.921118731 KNST(ph)DLDSAPEDPTS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 KNSTDLDSAPEDPTSPK 17 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L373;I3L135;I3L1Q4 I3L2J0 CIC Protein capicua homolog 2 0 KNS(0.438)T(0.547)DLDS(0.016)APEDPT(0.297)S(0.703)PK 99.943 0.0036617 34927000 3348.9 3626 3395.4 3546 3672.1 3517.2 3874.5 3940.1 3189 3602.1 TRUE FALSE FALSE 2956.347019 3737.712762 3578.965595 3690.621207 3401.216499 3450.11527 4023.940763 4388.625058 3057.54807 3580.674549 0.825639688 1.043857159 0.999522728 1.030705571 0.949881496 0.963537798 1.123794053 1.225641984 0.853902813 1 11.80601568 -1 0.517393084 0.931705961 11.99835521 0.622295038 0.068619909 56.98613481 0.522524 0.015948181 695.030771 0.1 1 11.06664925 RDS(ph)DGVDGFEAEGKK ddPTM_HeLa_CUDC101_4h_R1 1 RDSDGVDGFEAEGKK 15 2 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 0 RDS(1)DGVDGFEAEGKK 69.747 0.033246 46865000 2313.3 2317 2558.3 2378.5 2448.8 2548.3 2453.6 2768.9 2635.6 2435.7 TRUE FALSE FALSE 2042.138481 2388.384024 2696.609436 2475.505511 2268.156903 2499.695423 2548.236174 3084.100384 2526.959452 2421.212348 0.84343634 0.986441369 1.113743468 1.022423957 0.936785617 1.032414784 1.052462902 1.273783518 1.043675271 1 11.2415139 -1 0.548557032 0.942636464 14.7189993 0.478209618 0.07695248 69.50747577 0.583143863 0.01616238 1132.609278 0.1 1 13.77636283 LS(ph)SSSATLLNS(ph)PDRAR ddPTM_HeLa_CUDC101_4h_R1 1 LSSSSATLLNSPDRAR 16 1 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40 Q14244-5 MAP7 Ensconsin 2 0 LS(0.623)S(0.188)S(0.188)S(0.001)AT(0.005)LLNS(0.995)PDRAR 105.02 0.032125 6212700 2240.2 2130.3 2287.2 2338.9 3473.1 3387 3516.8 4982.5 2029.3 1949.3 TRUE FALSE FALSE 1977.607152 2195.932018 2410.85295 2434.290452 3216.896332 3322.398618 3652.444154 5549.68766 1945.651395 1937.705477 1.020592229 1.133264082 1.244179252 1.256274744 1.660157527 1.714604545 1.884932565 2.864051181 1.004100684 1 10.92013359 -1 0.382870368 0.989867436 27.24923141 0.96184242 0.108071706 6.909460589 0.083580573 0.026467622 136.554251 0.1 1 26.25936397 up NLEELEEKSTT(ph)PPPAEPVSLPQEPPK ddPTM_HeLa_CUDC101_4h_R1 3 NLEELEEKSTTPPPAEPVSLPQEPPK 26 1 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 NLEELEEKS(0.023)T(0.46)T(0.471)PPPAEPVS(0.046)LPQEPPK;NLEELEEKS(0.038)T(0.205)T(0.757)PPPAEPVSLPQEPPK;NLEELEEKS(0.016)T(0.053)T(0.932)PPPAEPVSLPQEPPK ;; 116.2 4.06E-08 61217000 4115 5713.1 5249.1 5135.3 8532.2 5815.7 6212 9156.3 5292.8 3924.55 TRUE FALSE FALSE 3632.645938 5889.113839 5532.882224 5344.739731 7902.796605 5704.775212 6451.598921 10198.61618 5074.628544 3901.206602 0.931159589 1.509562153 1.418248964 1.37002222 2.025731373 1.462310458 1.65374449 2.614220989 1.300784363 1 11.92970469 -1 0.226688827 0.873917062 9.048870832 0.627401061 0.284460184 18.06841033 0.218629937 0.183219291 55.10682128 0.1 1 8.17495377 VADPDHDHTGFLTEYVATR ddPTM_HeLa_CUDC101_4h_R1 2 VADPDHDHTGFLTEYVATR 19 0 P28482-2;P28482 P28482-2 MAPK1 Mitogen-activated protein kinase 1 0 0 ; ; 99.371 0.0012085 30100000 6384.1 5193.3 5307.4 5179.6 6925 6496 5403.8 5031.2 5985 5053.5 FALSE FALSE TRUE 5635.765476 5353.299417 5594.334098 5390.846476 6414.156547 6372.099623 5612.226376 5603.931471 5738.295767 5023.441557 1.12189331 1.06566372 1.113645702 1.07313809 1.276845062 1.268472928 1.117207459 1.115556219 1.142303678 1 12.29446038 -5.853249852 8.799205166 1.064950975 1.19409186 0.388049226 0.063486975 0.193867879 16.67878233 0.010393089 0.018881107 1.40E-06 5.853249852 0.129140886 VAEFHTELER ddPTM_HeLa_CUDC101_4h_R1 3 VAEFHTELER 10 0 K7ERW6;K7EJC1;K7EJR3;R4GMR5;P48556 K7ERW6 PSMD8 26S proteasome non-ATPase regulatory subunit 8 0 0 ;; ;; 185.96 2.67E-11 33440100 21166.2 18085.7 18514 19517.4 20684.5 19870.1 18439.8 19165 20622.5 21689.8 FALSE FALSE TRUE 18685.13012 18642.89898 19514.92284 20313.40393 19158.64564 19491.11095 19151.02926 21346.66613 19772.43182 21560.7881 0.866625563 0.864666861 0.905111759 0.942145706 0.888587446 0.904007351 0.888234195 0.990068917 0.917055152 1 14.39612229 -9.425979203 1.161982847 0.999858188 0.901366233 0.0748259 0.043102026 0.31049285 0.751542362 0.024410351 0.006176689 3.75E-10 9.425979203 -0.098491955 VAEIEHAEK(ac)EK ddPTM_HeLa_CUDC101_4h_R1 1 VAEIEHAEKEK 11 1 F5GWF6;P78371-2;P78371;F8VQ14 F5GWF6 CCT2 T-complex protein 1 subunit beta 0 1 VAEIEHAEK(1)EK 113.61 0.0041604 2974600 4090.2 2888.8 2834.8 2643.4 5434.1 4029.4 5127.1 4905.9 4029.6 4293.7 FALSE TRUE FALSE 3610.752956 2977.800504 2988.057863 2751.209278 5033.237269 3952.545908 5324.853964 5464.367826 3863.498182 4268.160881 0.845973958 0.697677662 0.700080889 0.644588935 1.179252003 0.926053637 1.247575739 1.280262853 0.905190383 1 12.05939884 -4.824415935 1.29455704 0.878299087 1.327048307 0.539889976 0.14937521 0.443949782 1.143482087 0.024819652 0.200648425 1.50E-05 4.824415935 0.44874922 VAEKLDEIYVAGLVAHSDLDER ddPTM_HeLa_CUDC101_4h_R1 2 VAEKLDEIYVAGLVAHSDLDER 22 1 O60506-2;O60506;O60506-4;O60506-3;F6UXX1 O60506-2 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 0 ; ; 146.13 2.68E-07 18415000 6752.83 6018.91 6372.45 6153.58 7782.44 6766.14 5845.71 6884.37 7068.6 6711.6 FALSE FALSE TRUE 5961.273504 6204.345483 6716.963923 6404.54959 7208.344906 6637.087153 6071.180993 7668.058853 6777.229316 6671.679105 0.893519219 0.929952623 1.006787619 0.959960677 1.080439391 0.994815106 0.909992956 1.149344675 1.015820637 1 12.70383418 -6.356362642 1.787104246 0.947743327 1.018776306 0.127792901 0.069068653 0.469717643 2.938396443 0.011208181 0.019187822 4.40E-07 6.356362642 0.071032979 T(ph)LRDSPNVEAAHLAR ddPTM_HeLa_CUDC101_4h_R1 1 TLRDSPNVEAAHLAR 15 1 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YC29;E5RJ97 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 T(0.994)LRDS(0.006)PNVEAAHLAR 119.96 0.00054533 17002000 2299.9 1897.1 1918.3 1834.2 1906.2 1906.4 1859.1 1278.6 2009.1 2265.3 TRUE FALSE FALSE 2030.309208 1955.547402 2022.009101 1909.006604 1765.583424 1870.038596 1930.80611 1424.150656 1926.284048 2251.825895 0.901627969 0.868427442 0.897942023 0.847759415 0.784067466 0.830454344 0.857440228 0.632442614 0.855432053 1 11.13687957 -1 0.115117431 1.068371698 0.00758036 0.484622468 0.064168243 33.51465175 0.267825158 0.23383874 5.696932615 0.1 1 -1.060791339 EAANEAGDSS(ph)QDEAEDDVK ddPTM_HeLa_CUDC101_4h_R1 1 EAANEAGDSSQDEAEDDVK 19 0 A0A0C4DH01;Q9NVU0-3;Q9NVU0-2;Q9NVU0-5;Q9NVU0-4;Q9NVU0 A0A0C4DH01 POLR3E DNA-directed RNA polymerase III subunit RPC5 1 0 EAANEAGDS(0.068)S(0.932)QDEAEDDVK 212.34 2.26E-24 10741000 3652.8 3144.9 3182.8 3027.9 3763.8 2864.1 2596.9 2790.2 3918.5 3508.4 TRUE FALSE FALSE 3224.624321 3241.790641 3354.871795 3151.39085 3486.151973 2809.472064 2697.063303 3107.82509 3756.977771 3487.531881 0.924615009 0.929537206 0.961961614 0.903616356 0.999604331 0.805576024 0.773344415 0.891124496 1.077259764 1 11.76799069 -1 0.164824722 1.003571002 0.263784558 0.499459166 0.061106487 39.12313699 0.403265852 0.089101904 7.115344218 0.1 1 -0.739786444 VAETANEEEVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VAETANEEEVKK 12 1 D6R9I9;P61221 D6R9I9 ABCE1 ATP-binding cassette sub-family E member 1 0 1 ; VAETANEEEVK(1)K;VAETANEEEVK(1)K 226.33 1.23E-22 2511300 1138.75 562.41 554.13 660.66 1384.09 1117.15 1468.35 1059.6 828.32 1087.27 FALSE TRUE FALSE 1005.267451 579.7371855 584.087944 687.6045704 1281.988438 1095.842225 1524.984751 1180.220581 794.176299 1080.80287 0.930111753 0.536394935 0.540420423 0.63619795 1.186144554 1.013914985 1.410974003 1.091985055 0.734802175 1 10.0778877 -5.726392133 24.60241925 0.874122225 1.180996468 0.462641629 0.202279553 152.9285022 107351.6313 0.033668218 0.067333909 1.88E-06 5.726392133 0.306874243 TDIYSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 TDIYSKK 7 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 0 1 TDIYSK(1)K 98.629 0.020552 1078200 647.72 794.72 825.55 782.49 1102.4 931.3 1101.4 1340.6 645.87 507.72 FALSE TRUE FALSE 571.7952435 819.2043812 870.1817302 814.4033244 1021.078148 913.5370042 1143.881367 1493.208485 619.2469652 504.7000589 1.132940711 1.623150952 1.724156189 1.613638259 2.023138556 1.810059238 2.266457764 2.958605728 1.226960359 1 8.979282445 -1 0.212929065 0.889358305 10.815593 0.88028456 0.19128444 9.819572992 0.115897616 0.147492398 33.44743219 0.1 1 9.926234699 up VAGGAAPSKPASAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VAGGAAPSKPASAKK 15 2 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 1 ; VAGGAAPSKPASAK(1)K;VAGGAAPSKPASAK(1)K 171.99 7.99E-07 69769000 19168.5 15866 15272.6 15730.9 15337.3 15696.1 15649.6 18258.7 12160.2 9247.6 FALSE TRUE FALSE 16921.59749 16354.81265 16098.28295 16372.4741 14205.89794 15396.72304 16253.21031 20337.1966 11658.95141 9192.594864 1.840785734 1.779129059 1.751222934 1.781050328 1.545363213 1.674904994 1.768076431 2.212345579 1.268298188 1 13.16625644 -9.259739997 0.714077573 0.926332458 1.788579422 0.673562623 0.179676172 0.325521592 0.258780994 0.170651016 0.034066144 5.50E-10 9.259739997 0.862246964 KGATPGK(ac)ALVATPGKK ddPTM_HeLa_CUDC101_4h_R1 2 KGATPGKALVATPGKK 16 3 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 ; KGATPGK(1)ALVATPGKK;K(0.009)GATPGK(0.991)ALVATPGKK 186.77 6.52E-12 27751000 10586.4 11058.4 12526 13075.8 13907.8 14232.1 15056.3 19992.8 10779.4 10204.7 FALSE TRUE FALSE 9345.47824 11399.0962 13203.19345 13609.08764 12881.8493 13960.6464 15637.02653 22268.69954 10335.06857 10144.00199 0.921281191 1.123727717 1.301576386 1.341589607 1.269898144 1.376246418 1.541504679 2.195257804 1.018835424 1 13.30833931 -1 0.352854724 0.961870791 14.58875671 0.89272106 0.113980535 12.25682115 0.153149686 0.036271794 112.8916924 0.1 1 13.62688592 up DIIRQPS(ph)EEEIIK ddPTM_HeLa_CUDC101_4h_R1 3 DIIRQPSEEEIIK 13 1 Q15121-2;Q15121;B1AKZ5 Q15121-2 PEA15 Astrocytic phosphoprotein PEA-15 1 0 DIIRQPS(1)EEEIIK;DIIRQPS(1)EEEIIK;DIIRQPS(1)EEEIIK ;; 82.663 0.015261 84812000 6027.1 6496.5 5265.2 5666.4 9577.8 6625.3 7861.1 10073.3 6666 5900.1 TRUE FALSE FALSE 5320.612474 6696.649465 5549.852638 5897.500284 8871.264776 6498.933441 8164.30526 11220.00375 6391.224659 5865.005943 0.907179383 1.141797558 0.946265476 1.005540377 1.512575582 1.10808642 1.392036997 1.91304218 1.08972177 1 12.51791685 -1 0.439038266 0.960397565 20.11618181 0.74187975 0.151985935 23.31235887 0.257224032 0.03122883 401.0686552 0.1 1 19.15578425 KICTLPSPPS(ph)PLASLAPVADSSTR ddPTM_HeLa_CUDC101_4h_R1 2 KICTLPSPPSPLASLAPVADSSTR 24 1 Q9UER7-3;Q9UER7;Q9UER7-2 Q9UER7-3 DAXX Death domain-associated protein 6 1 0 KICTLPSPPS(0.999)PLASLAPVADSSTR;KICTLPS(0.01)PPS(0.986)PLAS(0.003)LAPVADSSTR ; 94.016 1.10E-05 112561000 4149.9 4070.42 3804.07 3819.5 4577.85 4310.14 4259.6 4396.55 4471.83 3397.5 TRUE FALSE FALSE 3663.455013 4195.824816 4009.729531 3975.275719 4240.151126 4227.931261 4423.894199 4897.035481 4287.499275 3377.291519 1.084731653 1.242363827 1.187261896 1.177060285 1.255488637 1.251870393 1.309894089 1.449988979 1.269508199 1 11.721651 -1 0.136300382 0.918505601 2.61075463 0.330622379 0.09531981 16.08138344 0.145943318 0.129128267 5.295651823 0.1 1 1.69224903 VAIEHLDK ddPTM_HeLa_CUDC101_4h_R1 2 VAIEHLDK 8 0 E7ENZ3;B7ZAR1;E9PCA1;P48643-2;P48643 E7ENZ3 CCT5 T-complex protein 1 subunit epsilon 0 0 ; ; 117.89 0.0073697 51847000 14642.4 12886.7 12134.2 13041.6 13134.2 12568.4 11945.2 12911.2 12766.6 12173.6 FALSE FALSE TRUE 12926.04007 13283.72395 12790.21156 13573.49282 12165.31623 12328.67871 12405.93037 14380.95882 12240.35534 12101.19089 1.068162645 1.097720388 1.056938253 1.121665871 1.005299094 1.018798796 1.025182602 1.188392031 1.011500063 1 13.56286141 -9.039927795 0.809423435 0.999458906 1.068852541 0.206933326 0.051648593 0.816964881 0.967574559 0.034086924 0.010122508 9.12E-10 9.039927795 0.069393635 VALHLDEEDKLR ddPTM_HeLa_CUDC101_4h_R1 4 VALHLDEEDKLR 12 1 B8ZZA3;A0A087X297;Q16719-2;Q16719;F8WEP1 B8ZZA3 KYNU Kynureninase 0 0 ;;; ;;; 117.71 0.0021611 49712900 47727.8 41618.7 42908.4 42775.3 47523.2 41306.4 39884.2 42960.6 45810.1 46930.6 FALSE FALSE TRUE 42133.21963 42900.92282 45228.15789 44519.86162 44017.50822 40518.54924 41422.54695 47851.06105 43921.78829 46651.4547 0.903149107 0.919605253 0.969490838 0.954308111 0.943539885 0.868537744 0.887915441 1.025714232 0.941488075 1 15.50963445 -9.447868883 1.153437703 1.000412113 0.929284399 0.028840582 0.045812144 0.522701189 1.232492425 0.029927368 0.007273098 3.57E-10 9.447868883 -0.071127714 VALK(ac)GPQVDVK ddPTM_HeLa_CUDC101_4h_R1 1 VALKGPQVDVK 11 1 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 0 1 VALK(1)GPQVDVK 127.42 0.0012849 719850 879.7 811.22 637.28 618.24 798.25 766.44 690.03 829.31 513.6 515.26 FALSE TRUE FALSE 776.5828995 836.2127267 671.7332845 643.4544995 739.3646878 751.821434 716.6446882 923.7152982 492.4291906 512.1952106 1.516185399 1.632605517 1.311479043 1.256268091 1.443521284 1.467841593 1.399163197 1.803443842 0.961409206 1 9.000549953 -9.237053727 0.819385542 0.978353183 1.469426056 0.636444971 0.14933285 0.39414704 0.443741005 0.124878789 0.029257526 5.79E-10 9.237053727 0.491072873 EGPSTS(ph)PDLIDPESFSQDILHDK ddPTM_HeLa_CUDC101_4h_R1 2 EGPSTSPDLIDPESFSQDILHDK 23 0 C9J2X2;G5E962;P43364-2;P43364 C9J2X2 MAGEA11 Melanoma-associated antigen 11 1 0 EGPS(0.02)T(0.114)S(0.865)PDLIDPESFSQDILHDK;EGPS(0.035)T(0.148)S(0.817)PDLIDPESFSQDILHDK ; 189.62 2.96E-14 11170100 3648.3 3176.8 2696.4 2825.2 3398.4 2954.8 2597.4 2316 2907.1 3487.6 TRUE FALSE FALSE 3220.651804 3274.673443 2842.17554 2940.423868 3147.706803 2898.442113 2697.582588 2579.644078 2787.268108 3466.8556 0.928983545 0.94456586 0.819813649 0.848152968 0.907942864 0.836043507 0.778106417 0.744087547 0.80397583 1 11.75941203 -1 0.133703737 1.045891466 0.038442503 0.195690344 0.069123195 21.89697765 0.195981253 0.108924635 4.19594865 0.1 1 -1.007448963 HSPS(ph)PPPPTPTESR ddPTM_HeLa_CUDC101_4h_R1 2 HSPSPPPPTPTESR 14 0 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 0 HS(0.055)PS(0.945)PPPPTPTESR;HS(0.009)PS(0.991)PPPPTPTESR ; 115.58 0.0014258 22855000 4091.3 3816.2 4157 3968.3 4707.1 4519.4 3930.2 4693.7 4267.3 4457.8 TRUE FALSE FALSE 3611.724016 3933.772599 4381.739994 4130.144426 4359.866611 4433.199975 4081.789131 5228.011835 4091.400088 4431.284807 0.815051204 0.887727323 0.988819312 0.932042197 0.983883185 1.000432192 0.921129945 1.179795942 0.923298832 1 12.11350934 -1 0.883316441 0.920153836 107.501324 0.571609537 0.059526879 558.1777865 1.259905592 0.012252092 119857.4106 0.1 1 106.5811702 GLSAS(ph)LPDLDSENWIEVKK ddPTM_HeLa_CUDC101_4h_R1 1 GLSASLPDLDSENWIEVKK 19 1 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YBW1;H0YC73 Q6PKG0 LARP1 La-related protein 1 1 0 GLS(0.057)AS(0.786)LPDLDS(0.157)ENWIEVKK 73.389 0.0060584 41376000 713.53 987.06 808.54 806.55 1208.9 924.23 880.28 1445.4 1012.5 576.56 TRUE FALSE FALSE 629.891095 1017.470149 852.2521181 839.4445952 1119.721855 906.6018526 914.2326945 1609.938493 970.7643214 573.1305955 1.099035892 1.775284999 1.487012079 1.464665474 1.953694087 1.58184166 1.595155976 2.809025563 1.69379253 1 9.162720104 -1 0.196408656 0.895777335 7.772520105 0.396942611 0.368165933 21.72501695 0.247018065 0.287729763 46.06925554 0.1 1 6.87674277 VALVYGQMNEPPGAR ddPTM_HeLa_CUDC101_4h_R1 1 VALVYGQMNEPPGAR 15 0 P06576;H0YH81;F8W0P7 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 0 105.13 0.0025354 0 1371.3 1331.9 1116.9 1023.8 1204.5 1183 1331.2 1320.4 1364 1281.1 FALSE FALSE TRUE 1210.558293 1372.93426 1177.282992 1065.554989 1115.646435 1160.436246 1382.54483 1470.708999 1307.775343 1273.47996 0.950590767 1.078096478 0.924461342 0.836726939 0.876061241 0.911232436 1.085643177 1.154874081 1.026930445 1 10.31456054 -4.60429198 4.578180426 0.95923854 1.140393103 0.505415156 0.068103221 0.127345649 4.738084517 0.009932127 0.041606838 2.49E-05 4.60429198 0.181154562 VANPSGNLTETYVQDR ddPTM_HeLa_CUDC101_4h_R1 1 VANPSGNLTETYVQDR 16 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 176.56 1.64E-06 27932000 1279.2 1013.7 1046.6 898.19 1319.5 1078.5 795.61 625.32 900.63 877.72 FALSE FALSE TRUE 1129.254115 1044.930895 1103.182362 934.8220705 1222.163114 1057.929409 826.2969442 696.5039012 863.5056502 872.4992824 1.294275122 1.197629518 1.264393432 1.071430188 1.400761168 1.212527541 0.947045987 0.79828593 0.989692104 1 9.769010135 -4.593958624 3.642101682 1.17245972 0.822267718 0.509851815 0.123609947 0.151870091 3.859340143 0.019354742 0.092630943 2.55E-05 4.593958624 -0.350192002 VAPAPAVVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VAPAPAVVKK 10 1 P62424;Q5T8U3 P62424 RPL7A 60S ribosomal protein L7a 0 1 ; VAPAPAVVK(1)K;VAPAPAVVK(1)K 133.12 0.0016341 4854600 4366.3 4263.5 4032.2 4069 4197.9 4230.7 4445 3734.3 4195.9 3447.5 FALSE TRUE FALSE 3854.488933 4394.853382 4250.192929 4234.951408 3888.22928 4150.006446 4616.445139 4159.397617 4022.943226 3426.994117 1.124743376 1.282422214 1.240210162 1.235762672 1.13458884 1.210975655 1.34708289 1.213716008 1.173898492 1 11.742728 -7.930270064 0.746920481 1.016308986 1.24146659 0.315295288 0.074985633 0.225647015 0.277318031 0.020234083 0.015272046 1.17E-08 7.930270064 0.225157604 SESVEGFLS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 4 SESVEGFLSPSR 12 0 Q08AD1-2;Q08AD1-3;Q08AD1 Q08AD1-2 CAMSAP2 Calmodulin-regulated spectrin-associated protein 2 1 0 SESVEGFLS(0.999)PS(0.001)R;SESVEGFLS(0.999)PS(0.001)R;SESVEGFLS(0.986)PS(0.014)R;SESVEGFLS(0.998)PS(0.002)R ;;; 196.02 3.91E-16 210896000 7825.1 7517.2 7029.1 6639.9 7904.1 7192.4 7281.3 6905.4 7443 7021.8 TRUE FALSE FALSE 6907.85364 7748.796022 7409.114408 6910.703822 7321.03029 7055.216953 7562.14218 7691.482823 7136.19639 6980.034021 0.989659022 1.110137286 1.061472535 0.990067355 1.048853096 1.010771141 1.083396178 1.101926266 1.022372723 1 12.76901835 -1 0.180984744 0.985827577 1.433138559 0.184137283 0.039303887 47.24773581 0.514550411 0.051114447 5.857149613 0.1 1 0.447310982 VAPEEHPVLLTEAPLNPK ddPTM_HeLa_CUDC101_4h_R1 5 VAPEEHPVLLTEAPLNPK 18 0 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 ;;;; ;;;; 196.8 2.09E-18 43521300 9394.47 8837.15 8087.64 7774.92 8525.39 8602.46 8700.75 8419.21 8122.68 8516.44 FALSE FALSE TRUE 8293.264468 9109.412117 8524.882282 8092.014844 7896.488965 8438.382408 9036.340842 9377.618835 7787.859692 8465.783836 0.979621572 1.076027016 1.006980859 0.955849452 0.932753436 0.996763273 1.06739565 1.107708278 0.919921869 1 13.04742794 -4.652651446 3.186502556 0.991061767 1.10091818 0.501977672 0.041807785 0.142612816 2.739705722 0.005160143 0.024837585 2.23E-05 4.652651446 0.109856413 ATNES(ph)EDEIPQLVPIGKK ddPTM_HeLa_CUDC101_4h_R1 2 ATNESEDEIPQLVPIGKK 18 1 J3QSV6;O76021-2;O76021 J3QSV6 RSL1D1 Ribosomal L1 domain-containing protein 1 1 0 AT(0.327)NES(0.673)EDEIPQLVPIGKK;AT(0.039)NES(0.961)EDEIPQLVPIGKK ; 90.06 0.0027883 289720000 4492.2 4989.1 5525.4 5038.5 8625.3 5411.6 6315.2 8860.1 5604.6 3457.9 TRUE FALSE FALSE 3965.631126 5142.808257 5824.119837 5243.991808 7989.028803 5308.382746 6558.779379 9868.69797 5373.576016 3437.332257 1.153694444 1.496162685 1.694372089 1.525599336 2.324194522 1.544332159 1.908101658 2.871034056 1.563298399 1 11.7470736 -1 0.188493616 0.858796771 8.494699385 0.575033709 0.339170547 18.80756717 0.20939025 0.310783388 41.96123897 0.1 1 7.635902614 HGS(ph)FHEDEDPIGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 HGSFHEDEDPIGSPR 15 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 2 0 HGS(1)FHEDEDPIGS(1)PR 119.5 0.0030229 8831500 2242 2067.7 2302.3 2208.5 2675 2432.9 2529.8 3273.2 2528.9 2446.5 TRUE FALSE FALSE 1979.196159 2131.403386 2426.769302 2298.572176 2477.670579 2386.496486 2627.375233 3645.807857 2424.657672 2431.948109 0.813831574 0.876418119 0.997870511 0.945156752 1.018800759 0.981310611 1.080358262 1.499130612 0.997002223 1 11.24789673 -1 0.829258094 0.918015395 178.6344837 0.870212018 0.06290028 166.707108 0.480957019 0.012464721 55832.46964 0.1 1 177.7164683 VKVDGPRS(ph)PSYGR ddPTM_HeLa_CUDC101_4h_R1 1 VKVDGPRSPSYGR 13 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 0 VKVDGPRS(0.756)PS(0.243)YGR 73.252 0.018721 918310000 2737.7 3670.8 3258.6 4088.6 4889.8 3956.5 4606.9 6574.2 3593.7 4056 TRUE FALSE FALSE 2416.790956 3783.892997 3434.769773 4255.35078 4529.089196 3881.036354 4784.589676 7322.580354 3445.566165 4031.874732 0.599421142 0.938494683 0.851903891 1.055427329 1.123320911 0.962588526 1.186691054 1.816172585 0.854581651 1 11.9772351 -1 0.586077103 0.831733743 55.0974862 0.80588904 0.133117606 56.2895839 0.420081769 0.031625577 3907.971202 0.1 1 54.26575245 ASLGSLEGEAEAEASS(ph)PKGK ddPTM_HeLa_CUDC101_4h_R1 3 ASLGSLEGEAEAEASSPKGK 20 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ASLGSLEGEAEAEAS(0.135)S(0.865)PKGK;ASLGSLEGEAEAEAS(0.399)S(0.601)PKGK;ASLGSLEGEAEAEAS(0.172)S(0.828)PKGK ;; 136.02 1.07E-05 1232530000 5769.6 7076.5 6062.5 6145.5 9199.3 6452.1 7639.9 9271.9 6607.4 6906.2 TRUE FALSE FALSE 5093.296234 7294.518577 6390.257088 6396.140053 8520.685967 6329.036942 7934.573502 10327.37562 6335.040175 6865.121615 0.741909105 1.062547612 0.930829408 0.931686343 1.241155866 0.921911846 1.155780472 1.504325225 0.9227863 1 12.74506956 -1 0.502910629 0.895384435 19.74675992 0.635030002 0.122587348 47.53111464 0.452968544 0.027340379 953.7860257 0.1 1 18.85137548 RSLTVSDDAESS(ph)EPER ddPTM_HeLa_CUDC101_4h_R1 1 RSLTVSDDAESSEPER 16 1 Q8NFC6;H0Y9Y2 Q8NFC6;H0Y9Y2 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 RSLTVSDDAES(0.136)S(0.864)EPER 120.59 0.0011281 4474100 1920.5 1878.1 1572.1 1587.1 1962.6 1917.6 2038.1 2001.4 1766.8 1607.2 TRUE FALSE FALSE 1695.381901 1935.962035 1657.092481 1651.828798 1817.822908 1881.024975 2116.7102 2229.231286 1693.971756 1597.640303 1.061178726 1.211763393 1.037212493 1.033917832 1.137817383 1.177377018 1.324897848 1.395327398 1.060296084 1 10.64172692 -1 0.350736447 1.024540027 5.764708801 0.785872641 0.058487896 16.41344174 0.205453836 0.017380452 52.16941939 0.1 1 4.740168774 AHT(ph)PTPGIYMGRPTHSGGGGGGGGGGGGGGGGR ddPTM_HeLa_CUDC101_4h_R1 2 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 33 1 Q13595;Q13595-4;Q13595-3 Q13595 TRA2A Transformer-2 protein homolog alpha 1 0 AHT(0.497)PT(0.497)PGIY(0.006)MGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.498)PT(0.498)PGIY(0.002)MGRPT(0.003)HS(0.001)GGGGGGGGGGGGGGGGR ; 94.031 9.16E-12 83452000 1795.87 1557.54 1534.56 1453.61 2137.79 1624.82 1668.4 1680.54 1768.06 1456.76 TRUE FALSE FALSE 1585.360841 1605.525961 1617.522955 1512.894499 1980.089491 1593.829266 1732.750747 1871.845881 1695.179818 1448.095127 1.094790537 1.10871581 1.117000483 1.044748008 1.367375288 1.100638512 1.196572459 1.292626324 1.17062739 1 10.49994066 -1 0.104021122 0.90991539 1.951297567 0.212425257 0.093936071 64.8738538 0.477903528 0.528075217 9.703444798 0.1 1 1.041382176 VAPSK(ac)LEALQK ddPTM_HeLa_CUDC101_4h_R1 1 VAPSKLEALQK 11 1 A0A5H1ZRP4;Q8WX92;Q8WX92-2 A0A5H1ZRP4 NELFB Negative elongation factor B 0 1 VAPSK(1)LEALQK 145.55 0.00014445 1045300 506.52 528.62 455.05 516.18 543.05 456.59 385.47 172.59 674.6 423.43 FALSE TRUE FALSE 447.1464934 544.9061556 479.6513795 537.2320515 502.9902834 447.8813065 400.337707 192.236948 646.7927025 420.9114195 1.062329204 1.294586296 1.139554208 1.276354184 1.195002701 1.064074971 0.95112104 0.456715924 1.536648027 1 8.717372841 -4.238392169 2.268038349 1.088170368 0.274671027 0.579678613 0.173823992 0.276636313 1.556058931 0.017264696 0.457113061 5.78E-05 4.238392169 -0.813499341 LS(ph)PGSYPTVIQQQNATSQR ddPTM_HeLa_CUDC101_4h_R1 2 LSPGSYPTVIQQQNATSQR 19 0 Q13469-3;Q13469-4;Q13469-2;Q13469;Q13469-5 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 0 LS(0.729)PGS(0.271)YPTVIQQQNATSQR;LS(0.976)PGS(0.024)YPTVIQQQNATSQR ; 143.69 4.96E-05 13356500 1833.49 1645.66 1623.42 1496.8 1772.7 1664.88 1373.2 1354.01 1787.84 1740.62 TRUE FALSE FALSE 1618.571082 1696.360834 1711.186996 1557.845974 1641.931453 1633.125188 1426.164784 1508.145025 1714.144478 1730.266715 0.935446002 0.980404246 0.988972961 0.900350195 0.948947026 0.943857484 0.824245633 0.871625751 0.990682225 1 10.75677873 -1 0.26344102 0.982321989 0.018812139 0.639107282 0.032869783 23.98413128 0.30284151 0.017011085 10.55337761 0.1 1 -0.96350985 VAPVINNGSPTILGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 VAPVINNGSPTILGKR 16 1 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 0 1 ; VAPVINNGSPTILGK(1)R;VAPVINNGSPTILGK(1)R 244.72 3.15E-50 1312270 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 VAPYRPDQQVEEDDDFMDENQGK ddPTM_HeLa_CUDC101_4h_R1 1 VAPYRPDQQVEEDDDFMDENQGK 23 1 Q7KZ85 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 0 81.967 0.00057943 6474800 2212 1910.8 1804 1795.4 1757.2 1820.8 1576 1707.6 1924.9 1717.3 FALSE FALSE TRUE 1952.712713 1969.669483 1901.529697 1868.624172 1627.574857 1786.071274 1636.786848 1901.986282 1845.554807 1707.085423 1.143886935 1.153820106 1.113904243 1.094628392 0.953423206 1.046269419 0.958819533 1.114171708 1.081114502 1 10.73731954 -5.795747891 24.97150539 1.08218225 1.015938517 0.284442766 0.058818521 249.5220305 181614.4426 0.010721582 0.019435243 1.60E-06 5.795747891 -0.066243734 VAQGATEK(ac)SPEDK ddPTM_HeLa_CUDC101_4h_R1 1 VAQGATEKSPEDK 13 1 P49321;P49321-3;P49321-4 P49321 NASP Nuclear autoantigenic sperm protein 0 1 VAQGATEK(1)SPEDK 152.38 0.00034861 1869000 410.27 351.3 301.1 452.07 352.08 426.15 326.09 216.21 419.89 552.1 FALSE TRUE FALSE 362.1787725 362.1231366 317.3783768 470.5073686 326.1077598 418.0218988 338.6674005 240.8224724 402.5819565 548.8160846 0.659927401 0.659826027 0.57829642 0.857313373 0.594202264 0.761679387 0.617087236 0.438803598 0.733546206 1 9.100178954 -13.52287875 0.209549408 2.787214212 0.593383542 0.186180231 0.134719278 22.89595063 0.284094996 16.66598219 0.092184729 3.00E-14 13.52287875 -2.193830669 GGSSVEAPCPSDVT(ph)PEDDRSFQTVWATVFEHHVER ddPTM_HeLa_CUDC101_4h_R1 1 GGSSVEAPCPSDVTPEDDRSFQTVWATVFEHHVER 35 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 GGSSVEAPCPS(0.135)DVT(0.676)PEDDRS(0.094)FQT(0.094)VWAT(0.001)VFEHHVER 70.424 1.37E-06 4838800 1132.8 1244.6 1361.3 1078.4 1669.1 1798.6 1565 1947.7 1038.3 569.8 TRUE FALSE FALSE 1000.014901 1282.944651 1434.895996 1122.381813 1545.973818 1764.294702 1625.362574 2169.418295 995.5008345 566.4108043 1.765529354 2.265042688 2.533313251 1.98156851 2.729421485 3.114867669 2.869582575 3.830114607 1.757559755 1 9.145704975 -1 0.112967913 0.210469898 10.73513434 0.802156382 0.340764434 18.30104665 0.144089696 1.309858063 30.23000805 0.1 1 10.52466444 up MNEVS(ph)VIK ddPTM_HeLa_CUDC101_4h_R1 2 MNEVSVIK 8 0 P31751;P31751-2;C9JHS6;J3QLS6;M0QZK3;A0A1B0GXA2;E7EVP8;A8MX96;C9JIF6;C9J258;A0A5F9ZHJ8;A0A0A0MRF1;C9JIJ1;C9JC83;J3KSY8;J3KRI8 P31751 AKT2 RAC-beta serine/threonine-protein kinase 1 0 MNEVS(1)VIK;MNEVS(1)VIK ; 106.2 0.026617 332810000 5957.9 6444.8 5479.1 5316.7 6493.6 5955.8 5885.4 6012.6 5837.1 5210.5 TRUE FALSE FALSE 5259.523994 6643.356649 5775.316719 5533.538007 6014.580065 5842.203038 6112.401849 6697.05008 5596.492267 5179.507714 1.015448626 1.282623179 1.115031976 1.068352112 1.161226201 1.12794562 1.18011251 1.292989691 1.080506599 1 12.33859927 -1 0.120352633 0.91651807 1.971695508 0.324161612 0.07789851 52.57090593 0.434892733 0.336437617 9.342368375 0.1 1 1.055177439 VAQILK(ac)EPK ddPTM_HeLa_CUDC101_4h_R1 2 VAQILKEPK 9 1 A0A494C0K9;H7C0C1;P48047 A0A494C0K9 ATP5O "ATP synthase subunit O, mitochondrial" 0 1 ; VAQILK(1)EPK;VAQILK(1)EPK 125.57 0.0021424 2494900 4048.1 1444.16 1247.5 1723.2 3210.5 2848.8 3131.7 2242.36 1623.11 969.54 FALSE TRUE FALSE 3573.587855 1488.652858 1314.943623 1793.479544 2973.667811 2794.463886 3252.490718 2497.621198 1556.204719 963.773133 3.707913961 1.54460921 1.364370492 1.8608939 3.085443773 2.899503826 3.374747238 2.591503242 1.61470025 1 9.912549774 -9.603599727 1.402660921 0.999895505 2.681325469 0.281363262 0.758079981 0.384339399 1.356888844 0.604663952 0.139521982 2.49E-10 9.603599727 1.681429964 AAS(ph)LMNLENI ddPTM_HeLa_CUDC101_4h_R1 1 AASLMNLENI 10 0 Q96NL6;D6RBP0;Q96NL6-3;Q96NL6-2 Q96NL6 SCLT1 Sodium channel and clathrin linker 1 1 0 AAS(1)LMNLENI 99.5 0.002095 0 920.6 776.17 831.77 736.57 953.67 854.69 829.36 823.63 769.14 833.61 TRUE FALSE FALSE 812.6886635 800.0828777 876.7380022 766.6105083 883.3196641 838.3882123 861.348693 917.38871 737.4357237 828.6516506 0.980736191 0.965523784 1.058029633 0.925130008 1.065972249 1.011749885 1.039458127 1.107086083 0.88992247 1 9.694621937 -1 0.540446561 0.990507494 5.821949222 0.392505564 0.049278979 68.97318473 0.592638626 0.00624818 387.171723 0.1 1 4.831441728 (ac)S(ph)RHEGVSCDACLK ddPTM_HeLa_CUDC101_4h_R1 2 SRHEGVSCDACLK 13 1 Q9P0J7 Q9P0J7 KCMF1 E3 ubiquitin-protein ligase KCMF1 1 0 S(1)RHEGVSCDACLK;S(1)RHEGVSCDACLK ; 74.944 2.46E-07 34124000 3506.2 2747.75 3068.6 2657.51 3988.8 3910.7 3765.7 3814.5 3679.5 2233.15 TRUE FALSE FALSE 3095.208551 2832.404921 3234.497798 2765.894745 3694.554171 3836.109913 3910.94431 4248.727261 3527.829453 2219.867124 1.394321542 1.275934442 1.457068201 1.24597311 1.664313206 1.728080871 1.761792076 1.913955666 1.589207486 1 11.11625761 -1 0.122593455 0.840357758 4.28185306 0.456722158 0.195640594 23.08643803 0.193700562 0.46547775 13.66418129 0.1 1 3.441495302 AEAPLPS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 AEAPLPSPK 9 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 AEAPLPS(1)PK;AEAPLPS(1)PK;AEAPLPS(1)PK ;; 120.57 0.0055601 661498000 29262.7 28282.5 27861.1 30783.4 29689.9 31971.7 32934.9 32912 22665.1 24989.7 TRUE FALSE FALSE 25832.57067 29153.8503 29367.35534 32038.88011 27499.73523 31361.89309 34205.21013 36658.56905 21730.83498 24841.06015 1.039914179 1.173615382 1.182210226 1.289754942 1.10702744 1.2625022 1.376962574 1.475724821 0.874794991 1 14.60043912 -1 0.198925866 0.96445254 3.370960454 0.828827527 0.071134409 13.61105974 0.155731072 0.060796962 10.27140024 0.1 1 2.406507914 LSDISPIGRDPS(ph)ESSFSSATLTPSSTCPSLVDSR ddPTM_HeLa_CUDC101_4h_R1 1 LSDISPIGRDPSESSFSSATLTPSSTCPSLVDSR 34 1 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 LS(0.008)DIS(0.035)PIGRDPS(0.24)ES(0.24)S(0.132)FS(0.147)S(0.163)AT(0.028)LT(0.004)PS(0.001)S(0.001)T(0.001)CPSLVDSR 48.224 0.011308 7199000 808.8 715.99 494.51 727.79 920.11 878.27 836.89 889.33 776.65 557.77 TRUE FALSE FALSE 713.9936901 738.0488032 521.2447064 757.472422 852.2353184 861.518463 869.1691276 990.5677324 744.6361583 554.4523592 1.287745788 1.331131144 0.940107293 1.366163223 1.537075827 1.553818734 1.567617331 1.786569605 1.343011975 1 9.114919693 -1 0.184635838 1.006476675 4.384111469 0.601718149 0.15522856 21.33551194 0.234920186 0.165103844 20.49596217 0.1 1 3.377634794 DQMEGS(ph)PNSSESFEHIAR ddPTM_HeLa_CUDC101_4h_R1 2 DQMEGSPNSSESFEHIAR 18 0 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 0 DQMEGS(0.997)PNS(0.002)SESFEHIAR;DQMEGS(0.928)PNS(0.069)S(0.003)ESFEHIAR ; 166.35 4.36E-06 30650000 5401.8 3834 3511.4 3448.4 6046.8 4994 4091.3 2316.08 5350.6 5116.5 TRUE FALSE FALSE 4768.609193 3952.120996 3701.236905 3589.040657 5600.739611 4898.747771 4249.102811 2579.733185 5130.046003 5086.06683 0.937582881 0.777048577 0.727720856 0.705661325 1.101192689 0.963170154 0.835439831 0.507215747 1.008646991 1 12.3123347 -1 0.097692957 1.110607857 0.046274822 0.24505988 0.147877005 151.4303244 1.058998647 1.390685205 21.69454732 0.1 1 -1.064333035 GMGS(ph)LDAMDK ddPTM_HeLa_CUDC101_4h_R1 4 GMGSLDAMDK 10 0 P12268;H0Y4R1 P12268 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 1 0 GMGS(1)LDAMDK;GMGS(1)LDAMDK;GMGS(1)LDAMDK;GMGS(1)LDAMDK ;;; 126.12 0.00334 80994400 9054.6 8303.1 7415 7587.6 8953.7 7788.1 7656.2 6908.9 8697.7 8396.3 TRUE FALSE FALSE 7993.233514 8558.908669 7815.877329 7897.055124 8293.203389 7639.554968 7951.502199 7695.381249 8339.177125 8346.358434 0.957691139 1.025466224 0.93644161 0.946167743 0.993631349 0.915315946 0.952691196 0.922004645 0.999139588 1 13.02693116 -1 0.098608166 1.01946157 0.762706344 0.406502369 0.027300975 105.44007 0.743146723 0.230275955 3.678841908 0.1 1 -0.256755226 AGSEECVFYTDETASPLAPDLAKAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 AGSEECVFYTDETASPLAPDLAKASPK 27 1 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 AGSEECVFYTDET(0.003)AS(0.01)PLAPDLAKAS(0.987)PK 85.274 6.21E-06 4709100 594.59 565.13 684.67 617.58 903.59 755.6 889.32 1076.7 672.67 642.66 TRUE FALSE FALSE 524.8930615 582.5409855 721.6853312 642.7675818 836.9339659 741.1881889 923.6213703 1199.267176 644.9422579 638.8374297 0.821637927 0.911876728 1.129685422 1.006152038 1.31008912 1.160214093 1.445784682 1.877265044 1.009556153 1 9.319305033 -1 0.430981604 0.915118463 20.26892304 0.883624132 0.100449223 16.27536867 0.182379704 0.024464621 276.2956747 0.1 1 19.35380458 S(ph)KFDSDEEEEDTENVEAASSGK ddPTM_HeLa_CUDC101_4h_R1 4 SKFDSDEEEEDTENVEAASSGK 22 1 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 S(0.618)KFDS(0.382)DEEEEDTENVEAASSGK;S(0.5)KFDS(0.5)DEEEEDTENVEAASSGK;S(0.968)KFDS(0.032)DEEEEDTENVEAASSGK;S(0.724)KFDS(0.275)DEEEEDT(0.001)ENVEAASSGK ;;; 139.47 1.99E-07 308369000 13533.4 12814.7 11039.4 12163.8 13597.5 13081.8 12820.4 13055.1 12327.1 12214.8 TRUE FALSE FALSE 11947.03537 13209.50572 11636.22336 12659.89234 12594.43952 12832.28646 13314.88712 14541.23981 11818.97172 12142.14583 0.983931139 1.087905376 0.958333356 1.042640446 1.037249898 1.056838441 1.096584353 1.19758402 0.973384103 1 13.56773578 -1 0.462872046 0.995891787 5.948633273 0.757326132 0.033541432 25.25288051 0.265064283 0.006415904 120.092954 0.1 1 4.952741486 (ac)MHRDS(ph)CPLDCK ddPTM_HeLa_CUDC101_4h_R1 3 MHRDSCPLDCK 11 1 P84103;P84103-2;A0A087X2D0 P84103 SRSF3 Serine/arginine-rich splicing factor 3 1 0 MHRDS(1)CPLDCK;MHRDS(1)CPLDCK;MHRDS(1)CPLDCK ;; 80.239 0.010053 63045600 10539.1 8691.1 9366.5 9343.5 10577.5 10637.6 11521.9 11632.1 10483.1 6837.4 TRUE FALSE FALSE 9303.722674 8958.86249 9872.881322 9724.568316 9797.218898 10434.7055 11966.30354 12956.25125 10050.98218 6796.730841 1.368852599 1.318113472 1.452592659 1.430771432 1.44146048 1.535253602 1.760596943 1.906247511 1.478796559 1 12.73062528 -1 0.10293519 0.748708315 3.914868129 0.55821035 0.15387497 25.48430996 0.186123752 0.641474178 11.46229262 0.1 1 3.166159814 SAS(ph)TLCLPSVGAARPQVK ddPTM_HeLa_CUDC101_4h_R1 2 SASTLCLPSVGAARPQVK 18 1 Q8IUC4-2;A8MT19;Q8IUC4 Q8IUC4-2 RHPN2;RHPN2P1 Rhophilin-2;Putative rhophilin-2-like protein RHPN2P1 1 0 S(0.148)AS(0.581)T(0.271)LCLPSVGAARPQVK;S(0.009)AS(0.808)T(0.183)LCLPSVGAARPQVK ; 84.113 0.0042008 77408000 2294.96 1747.92 2060.8 2095.38 2667.8 2136.55 2381.4 2775.7 1799.5 1339.87 TRUE FALSE FALSE 2025.948268 1801.771343 2172.213082 2180.838653 2471.001709 2095.798868 2473.251396 3091.674468 1725.323848 1331.900394 1.52109593 1.352782349 1.630912561 1.637388699 1.855245123 1.573540243 1.856934203 2.32125051 1.295385043 1 10.37927048 -1 0.067665897 0.145741334 5.021770266 0.761884486 0.167222089 70.33266218 0.355975718 4.740656735 33.06864998 0.1 1 4.876028931 up TQTPPVSPAPQPTEERLPSS(ph)PVYEDAASFK ddPTM_HeLa_CUDC101_4h_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 1 0 TQTPPVS(0.001)PAPQPT(0.061)EERLPS(0.374)S(0.542)PVY(0.022)EDAASFK 78.343 7.26E-06 160800000 2030.8 2158.4 2064.6 2226 2525.8 2056.2 2343.4 2550.8 1850 1581.7 TRUE FALSE FALSE 1792.752702 2224.897746 2176.218521 2316.785902 2339.476766 2016.981411 2433.785723 2841.172761 1773.742217 1572.291978 1.140216148 1.415066525 1.384105848 1.473508696 1.487940407 1.282828787 1.547922242 1.807026176 1.128125209 1 10.61865344 -1 0.106224407 0.725131742 3.628395057 0.72631556 0.117585647 35.55009618 0.266403248 0.779516397 15.15657012 0.1 1 2.903263315 VQDLSAGGQGSLTDS(ph)GPERRPEGPGAQAPSSPR ddPTM_HeLa_CUDC101_4h_R1 2 VQDLSAGGQGSLTDSGPERRPEGPGAQAPSSPR 33 2 P40222 P40222 TXLNA Alpha-taxilin 1 0 VQDLS(0.049)AGGQGS(0.118)LT(0.118)DS(0.713)GPERRPEGPGAQAPS(0.001)SPR;VQDLSAGGQGS(0.015)LT(0.016)DS(0.967)GPERRPEGPGAQAPS(0.001)SPR ; 89.684 4.04E-09 46151000 535.81 808.85 752.02 742.84 1196.62 782.43 878.68 1360.73 773.05 444.76 TRUE FALSE FALSE 473.003164 833.7697098 792.6764759 773.136226 1108.347727 767.5064514 912.5709819 1515.630003 741.1845518 442.1145477 1.069865641 1.885868072 1.792921043 1.748723787 2.506924353 1.73599004 2.064105302 3.428138727 1.67645366 1 8.788276397 -1 0.189175649 0.780291219 10.67852144 0.563870637 0.435074046 19.49746329 0.217484075 0.413454345 56.65520599 0.1 1 9.898230223 FNEEHIPDSPFVVPVAS(ph)PSGDARR ddPTM_HeLa_CUDC101_4h_R1 5 FNEEHIPDSPFVVPVASPSGDARR 24 1 P21333-2;P21333;Q60FE5;A0A087WWY3;H0Y5C6 P21333-2 FLNA Filamin-A 1 0 FNEEHIPDSPFVVPVAS(0.61)PS(0.39)GDARR;FNEEHIPDSPFVVPVAS(0.671)PS(0.329)GDARR;FNEEHIPDSPFVVPVAS(0.793)PS(0.207)GDARR;FNEEHIPDSPFVVPVAS(0.947)PS(0.053)GDARR;FNEEHIPDSPFVVPVAS(0.893)PS(0.107)GDARR ;;;; 132.65 4.67E-09 61304500 9735.8 10103.8 9114.9 9441.2 11740.6 10497.9 10429.7 11853.8 11912.6 9267.2 TRUE FALSE FALSE 8594.584283 10415.0861 9607.679065 9826.252944 10874.51933 10297.67005 10831.97702 13203.18868 11421.55759 9212.078282 0.932969089 1.130590273 1.042943706 1.066670587 1.180463191 1.117844392 1.175845091 1.433247555 1.239845911 1 13.16931096 -1 0.328922899 0.969003504 5.296135382 0.388487162 0.10376975 16.06555068 0.204043681 0.020808822 42.79585121 0.1 1 4.327131877 RES(ph)EALDSPNSK ddPTM_HeLa_CUDC101_4h_R1 2 RESEALDSPNSK 12 1 P0C7T5 P0C7T5 ATXN1L Ataxin-1-like 1 0 RES(1)EALDSPNSK;RES(1)EALDSPNSK ; 99.747 0.0063104 11818800 4971.1 4687.5 5215.4 4545 6150.4 6231.6 6880.6 10125.3 5147.8 4924 TRUE FALSE FALSE 4388.395194 4831.916319 5497.3603 4730.364745 5696.697245 6112.742613 7145.987047 11277.92322 4935.605505 4894.711829 0.896558438 0.987170744 1.12312236 0.966423542 1.16384732 1.24884627 1.459940298 2.304103616 1.008354665 1 12.25700821 -1 0.664486799 0.96222932 132.7575125 0.970918168 0.067406616 24.3386981 0.138065005 0.011929623 4742.578165 0.1 1 131.7952832 up AEIKEMLAS(ph)DDEEDVSSK ddPTM_HeLa_CUDC101_4h_R1 2 AEIKEMLASDDEEDVSSK 18 1 E7ETM8;Q0ZGT2-4 E7ETM8 NEXN Nexilin 1 0 AEIKEMLAS(1)DDEEDVSSK;AEIKEMLAS(0.829)DDEEDVS(0.139)S(0.032)K ; 98.76 0.0014369 50498000 7181.8 7429.7 7248.9 5710.6 9261 8535.8 7697.4 9642.6 8091.8 5044.3 TRUE FALSE FALSE 6339.960291 7658.600251 7640.797461 5943.502951 8577.834481 8372.993837 7994.291296 10740.27461 7758.252579 5014.296279 1.264376881 1.527352957 1.523802551 1.185311481 1.710675637 1.669824312 1.594299748 2.141930594 1.547226599 1 12.29183153 -1 0.135275413 0.836900869 4.656330964 0.415951936 0.229214098 24.99140583 0.22557674 0.46009088 18.40871714 0.1 1 3.819430095 VDNLTYRTS(ph)PDTLR ddPTM_HeLa_CUDC101_4h_R1 1 VDNLTYRTSPDTLR 14 1 J3QL05;J3KP15;Q01130-2;Q01130 J3QL05 SRSF2 Serine/arginine-rich splicing factor 2 1 0 VDNLT(0.001)YRT(0.078)S(0.661)PDT(0.26)LR 173.19 1.79E-06 62469000 1965.1 2144.1 2142.4 1971.1 2860.2 2249.1 2439.7 2953.4 2218.2 1332.5 TRUE FALSE FALSE 1734.753957 2210.15718 2258.224624 2051.489978 2649.208744 2206.202165 2533.800046 3289.603118 2126.764857 1324.574231 1.309669112 1.668579328 1.704868306 1.548792004 2.000045511 1.665593452 1.912916609 2.483517376 1.605621495 1 10.37131298 -1 0.119749697 0.651874003 5.801080368 0.542751565 0.255222521 23.58757668 0.194375278 0.743551018 20.33980513 0.1 1 5.149206365 T(ph)VALS(ph)SAGVLS(ph)PMVAMLGAVAAQEVLK ddPTM_HeLa_CUDC101_4h_R1 1 TVALSSAGVLSPMVAMLGAVAAQEVLK 27 0 P41226 P41226 UBA7 Ubiquitin-like modifier-activating enzyme 7 3 0 T(0.709)VALS(0.67)S(0.67)AGVLS(0.951)PMVAMLGAVAAQEVLK 40.142 0.0033659 0 765.75 603.11 520.95 736.5 722.12 741.56 781.75 751.56 619.86 490.4 TRUE FALSE FALSE 675.9899458 621.6911042 549.1141328 766.5376534 668.8506463 727.4159785 811.9023594 837.1145525 594.3091084 487.483079 1.386694174 1.275308069 1.126427063 1.572439509 1.372048949 1.492187134 1.665498546 1.717217661 1.219137923 1 8.929208332 -1 0.064330873 0.44042491 3.534055838 0.680458304 0.12518317 103.0877329 0.498065469 4.645592251 29.55450136 0.1 1 3.093630928 SLGEQDQMT(ph)LRPPEKVDLEPLK ddPTM_HeLa_CUDC101_4h_R1 1 SLGEQDQMTLRPPEKVDLEPLK 22 2 P48681 P48681 NES Nestin 1 0 S(0.158)LGEQDQMT(0.842)LRPPEKVDLEPLK 49.592 0.031622 27372000 971.74 858.01 1125.4 919.67 1112.3 1020.3 1222 1462 1073.9 917.34 TRUE FALSE FALSE 857.8341103 884.4442711 1186.242528 957.1781178 1030.247845 1000.839477 1269.132949 1628.42817 1029.633387 911.8836209 0.940727622 0.969909154 1.300870529 1.049671357 1.129801897 1.097551765 1.391770748 1.785785086 1.129128064 1 9.832705902 -1 0.547462084 0.988204007 36.17291636 0.801476349 0.108144501 31.35024267 0.263867108 0.018885538 1301.578038 0.1 1 35.18471235 LEPQELS(ph)PLSATVFPK ddPTM_HeLa_CUDC101_4h_R1 1 LEPQELSPLSATVFPK 16 0 A0A087WUE6;Q3T8J9-2;Q3T8J9-3;Q3T8J9;Q9H869-7;Q9H869-5;Q9H869-6;Q9H869-4;Q9H869-3;Q9H869-2;Q9H869;Q9H869-8;Q9H869-9 A0A087WUE6;Q9H869-7 GON4L;YY1AP1 GON-4-like protein;YY1-associated protein 1 1 0 LEPQELS(0.603)PLS(0.397)ATVFPK 187.56 6.21E-11 37577000 4832.6 4178.6 3779.8 4104.1 4399.6 3923.8 3899.5 3302.9 4290.8 4382.2 TRUE FALSE FALSE 4266.129954 4307.337713 3984.147421 4271.482937 4075.050273 3848.960052 4049.905021 3678.888785 4113.931408 4356.13448 0.979338442 0.98879815 0.914606158 0.98056728 0.935473937 0.883572367 0.92970156 0.844530582 0.944399542 1 12.08883278 -1 0.224728574 1.003519585 0.205603177 0.591255159 0.030166433 15.80399362 0.190614829 0.016089276 4.650224921 0.1 1 -0.797916408 QRS(ph)PIALPVKQEPPQIDAVK ddPTM_HeLa_CUDC101_4h_R1 2 QRSPIALPVKQEPPQIDAVK 20 2 Q8TF01;Q8TF01-2 Q8TF01 PNISR Arginine/serine-rich protein PNISR 1 0 QRS(1)PIALPVKQEPPQIDAVK;QRS(1)PIALPVKQEPPQIDAVK ; 97.081 0.00043666 164667000 4583.7 4310.8 4408.8 4131.4 5416.2 5118.9 4563.4 5539.9 5041.6 4154 TRUE FALSE FALSE 4046.405634 4443.610638 4647.153064 4299.896349 5016.657717 5021.265511 4739.411867 6170.539823 4833.783114 4129.291823 0.979927263 1.076119303 1.125411635 1.041315686 1.214895418 1.216011298 1.14775416 1.494333674 1.170608259 1 12.01167866 -1 0.308723465 0.98260979 4.979472355 0.609899398 0.087608662 14.41248339 0.184256834 0.022675608 32.5757275 0.1 1 3.996862566 SGGIVIS(ph)PFRLEELTNR ddPTM_HeLa_CUDC101_4h_R1 2 SGGIVISPFRLEELTNR 17 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 SGGIVIS(1)PFRLEELTNR;SGGIVIS(1)PFRLEELTNR ; 112.12 0.0044285 148654000 4388.7 4219.6 3866.2 3739.6 4906.2 4345.1 4045.6 4294.5 4559.1 4234.2 TRUE FALSE FALSE 3874.263239 4349.600875 4075.218467 3892.117052 4544.279401 4262.224457 4201.640147 4783.368521 4371.171968 4209.01479 0.920467956 1.033401186 0.968211962 0.924709759 1.07965394 1.012641834 0.998247893 1.136457998 1.03852616 1 12.03926686 -1 0.513241718 0.967022218 6.211074975 0.334545368 0.051250666 68.03272635 0.630869831 0.009520909 389.3444656 0.1 1 5.244052758 EPTGVEENKTDSLFVLPSRDDAT(ph)PVRDEPMDAESITFK ddPTM_HeLa_CUDC101_4h_R1 2 EPTGVEENKTDSLFVLPSRDDATPVRDEPMDAESITFK 38 3 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 0 EPTGVEENKT(0.002)DS(0.009)LFVLPS(0.089)RDDAT(0.447)PVRDEPMDAES(0.399)IT(0.053)FK;EPT(0.001)GVEENKT(0.003)DS(0.02)LFVLPS(0.062)RDDAT(0.903)PVRDEPMDAES(0.009)IT(0.003)FK ; 52.17 0.0041665 70863000 2258 2141.95 2076.06 2385.11 2357.2 2539.7 2443.2 2639.5 2532.5 1767.92 TRUE FALSE FALSE 1993.320663 2207.940941 2188.298083 2482.385095 2183.314052 2491.259454 2537.435042 2939.970011 2428.109278 1757.404333 1.13424135 1.256364798 1.2451876 1.41252929 1.242351581 1.417578987 1.443853867 1.672904724 1.381645209 1 10.77923044 -1 0.150468571 0.914662606 3.489631413 0.423361147 0.134633601 13.4127072 0.130372069 0.132049969 7.576653167 0.1 1 2.574968807 RSS(ph)TSSEPTPTVK ddPTM_HeLa_CUDC101_4h_R1 3 RSSTSSEPTPTVK 13 1 F8WAN1;A0A494C1J1;Q69YQ0-2;Q69YQ0 F8WAN1 SPECC1L-ADORA2A;SPECC1L Cytospin-A 1 0 RS(0.001)S(0.996)T(0.003)SSEPTPTVK;RS(0.168)S(0.615)T(0.076)S(0.141)SEPTPTVK;RS(0.001)S(0.995)T(0.004)SSEPTPTVK ;; 207.08 2.71E-23 46115900 14998.5 13892.7 13799.5 14937.8 16490.3 15085.4 15846.4 17273.2 14025.6 13306.2 TRUE FALSE FALSE 13240.39857 14320.71762 14545.54271 15547.02805 15273.84342 14797.67113 16457.60096 19239.51127 13447.45883 13227.05413 1.001008874 1.08268383 1.099681196 1.175396116 1.154742641 1.118742766 1.244237817 1.454557536 1.016663174 1 13.69120417 -1 0.302532131 0.992102943 4.668944473 0.874388389 0.04627853 11.59246499 0.14829371 0.018259078 23.45653093 0.1 1 3.67684153 APSPTGPALISGAS(ph)PVHCAADGTVELK ddPTM_HeLa_CUDC101_4h_R1 1 APSPTGPALISGASPVHCAADGTVELK 27 0 E7EWD6;Q76L83 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 APSPTGPALIS(0.027)GAS(0.971)PVHCAADGT(0.001)VELK 83.317 8.36E-06 4569300 1647.2 1234.9 1314.4 1412.6 1328.1 1767.2 1660.3 1501.2 1838.9 1086.7 TRUE FALSE FALSE 1454.117713 1272.945805 1385.46044 1470.211934 1230.128709 1733.493604 1724.338327 1672.09054 1763.099764 1080.23626 1.346110816 1.178395738 1.28255317 1.361009613 1.13875895 1.60473562 1.596260365 1.547893365 1.632142735 1 10.07713117 -1 0.056122656 0.403633594 3.234585543 0 0.21909825 163.1964728 0.69428666 7.655150222 38.74060095 0.1 1 2.83095195 VAVEEVDEEGK ddPTM_HeLa_CUDC101_4h_R1 2 VAVEEVDEEGK 11 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 190.96 1.60E-10 115083000 5987.7 5054.3 5089.4 4875.7 4627.4 4881.5 4307.7 3813.1 5116.1 5521.3 FALSE FALSE TRUE 5285.830883 5210.016992 5364.548359 5074.552121 4286.045921 4788.393521 4473.849432 4247.167891 4905.212193 5488.459062 0.963081044 0.949267715 0.977423408 0.924585947 0.780919721 0.872447706 0.815137615 0.773836125 0.893732127 1 12.42218544 -5.931692783 3.702082426 0.978172736 0.815539557 0.749918433 0.039011859 0.057904654 1.602540886 0.004513778 0.008411412 1.17E-06 5.931692783 -0.162633179 VAVEEVDEEGK(ac)FVR ddPTM_HeLa_CUDC101_4h_R1 1 VAVEEVDEEGKFVR 14 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 1 VAVEEVDEEGK(1)FVR 190.3 1.51E-35 0 0 0 0 0 0 0 66.791 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 69.36715124 0 0 0 0 VAVEEVDEEGKFVR ddPTM_HeLa_CUDC101_4h_R1 2 VAVEEVDEEGKFVR 14 1 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 0 0 ; ; 206.74 1.74E-23 158000000 5364.6 4928.2 5470.8 5302.3 6356.7 5317.4 4741.5 5893.8 5752.8 5463.8 FALSE FALSE TRUE 4735.76972 5080.032001 5766.567996 5518.550712 5887.778905 5215.979454 4924.381243 6564.726368 5515.667149 5431.301075 0.871940195 0.935325059 1.061728657 1.016064224 1.084045761 0.960355425 0.906666962 1.208683937 1.015533308 1 12.40708212 -6.772660115 24.52464922 0.937522455 1.030898511 0.176949204 0.083849657 196.6388795 429783.9238 0.01354538 0.017896194 1.69E-07 6.772660115 0.093376056 TGS(ph)TSSKEDDYESDAATIVQK ddPTM_HeLa_CUDC101_4h_R1 1 TGSTSSKEDDYESDAATIVQK 21 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 0 T(0.074)GS(0.245)T(0.196)S(0.196)S(0.196)KEDDY(0.091)ES(0.001)DAATIVQK 68.625 0.0029518 47981000 2195.5 1440.2 1762.9 1844.3 2329.4 2567.9 2954.7 2450 1279 1241.4 TRUE FALSE FALSE 1938.146818 1484.570855 1858.207706 1919.518526 2157.564803 2518.921586 3068.663769 2728.898097 1226.279079 1234.016098 1.57060092 1.203040104 1.505821286 1.555505256 1.748408961 2.041238839 2.486729124 2.211395866 0.993730212 1 10.2691455 -1 0.182196182 1.00847595 7.370255692 0.86411181 0.17538619 16.17210113 0.176774551 0.244392636 28.76045067 0.1 1 6.361779741 up VAVGELTDEDVK ddPTM_HeLa_CUDC101_4h_R1 2 VAVGELTDEDVK 12 0 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 0 0 ; ; 229.73 1.83E-32 25869000 3501.5 3175.3 2905 2390.21 3135.8 3062.6 2587.9 3141.3 2970.8 3708.8 FALSE FALSE TRUE 3091.059478 3273.127229 3062.053087 2487.693095 2904.478281 3004.186008 2687.71617 3498.892894 2848.342367 3686.739893 0.838426243 0.887810728 0.830558482 0.674767726 0.787817521 0.814862479 0.729022456 0.949047938 0.772591083 1 11.84812992 -8.78676592 0.460677031 1.024677147 0.793024314 0 0.099363179 0.801814363 0.298592642 0.084147173 0.022232517 1.63E-09 8.78676592 -0.231652833 VAVLLLAGGQGTR ddPTM_HeLa_CUDC101_4h_R1 2 VAVLLLAGGQGTR 13 0 Q16222-2;Q3KQV9;Q16222-3;Q16222 Q16222-2 UAP1;UAP1L1 UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase;UDP-N-acetylhexosamine pyrophosphorylase-like protein 1 0 0 ; ; 151.83 0.0039841 1757660 258.09 139.21 203.885 275.46 381.02 437.03 343.81 59.743 310.47 204.571 FALSE FALSE TRUE 227.8370814 143.4988951 214.9076398 286.6944494 352.9129137 428.6943809 357.0708669 66.54390163 297.6722952 203.3542026 1.120395244 0.705659845 1.056814352 1.409828003 1.73545916 2.108116653 1.755906012 0.327231504 1.463811868 1 7.667850996 -6.186591569 3.728577856 1.025515555 1.546913458 0.144893396 0.467903176 0.268415969 7.250056266 0.066388936 0.112256882 6.51E-07 6.186591569 0.521397903 WAHDKFSGEEGEIEDDES(ph)GTENR ddPTM_HeLa_CUDC101_4h_R1 1 WAHDKFSGEEGEIEDDESGTENR 23 1 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 WAHDKFS(0.001)GEEGEIEDDES(0.695)GT(0.304)ENR 48.337 0.029753 13277000 937.61 670.61 737.75 838.87 926.62 882.46 821.2 906.48 691.64 757.31 TRUE FALSE FALSE 827.7047771 691.2706992 777.6349966 873.0827445 858.2650887 865.6285458 852.8739591 1009.670019 663.1303065 752.8054864 1.099493551 0.91825938 1.032982637 1.159772026 1.14008878 1.149870134 1.132927396 1.341209698 0.880878684 1 9.556133332 -1 0.366428219 1.032470146 4.601550369 0.619016333 0.078167875 28.16252085 0.347316052 0.018223366 71.41257148 0.1 1 3.569080223 SNSFS(ph)DEREFSGPSTPTGTLEFEGGEVSLEGGK ddPTM_HeLa_CUDC101_4h_R1 1 SNSFSDEREFSGPSTPTGTLEFEGGEVSLEGGK 33 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 S(0.292)NS(0.243)FS(0.353)DEREFS(0.072)GPS(0.011)T(0.009)PT(0.009)GT(0.009)LEFEGGEVSLEGGK 50.899 0.0066594 49802000 3920.5 4076.8 3498 3684.1 4529.6 4317.5 4121.1 4997.2 4513.9 3958 TRUE FALSE FALSE 3460.944933 4202.401376 3687.112461 3834.353522 4195.460432 4235.150881 4280.052207 5566.061049 4327.835131 3934.45764 0.879649814 1.068101822 0.937133602 0.974557073 1.06633768 1.076425589 1.087837918 1.414695889 1.099982648 1 11.94194906 -1 0.605965148 0.952864079 29.94071963 0.717797376 0.072659596 47.89214808 0.334638988 0.011100208 1846.754695 0.1 1 28.98785555 YSHSYLSDS(ph)DTEAK ddPTM_HeLa_CUDC101_4h_R1 1 YSHSYLSDSDTEAK 14 0 Q92614;A0A0D9SFK2;Q92614-2;Q92614-3;Q92614-4;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 YSHS(0.004)YLS(0.298)DS(0.68)DT(0.018)EAK 134.06 0.00070946 46275000 3551.4 2865.4 2608.2 2691.4 3052.8 3113.2 2613.1 2019.3 3875.2 3331.8 TRUE FALSE FALSE 3135.110276 2953.679578 2749.207181 2801.166925 2827.601026 3053.820897 2713.888142 2249.16895 3715.462616 3311.982305 0.946596324 0.891816231 0.830079067 0.845767479 0.853748832 0.922052298 0.819415049 0.679100533 1.121824416 1 11.69347925 -1 0.13287777 1.051780338 0.036653001 0.698800608 0.061699149 32.02351528 0.285326282 0.162560076 6.138127583 0.1 1 -1.015127337 AAAAAWEEPSS(ph)GNGTAR ddPTM_HeLa_CUDC101_4h_R1 2 AAAAAWEEPSSGNGTAR 17 0 Q9P258 Q9P258 RCC2 Protein RCC2 1 0 AAAAAWEEPS(0.388)S(0.488)GNGT(0.124)AR;AAAAAWEEPS(0.4)S(0.598)GNGT(0.002)AR ; 117.13 0.00042634 16240400 3949.7 3685.1 3625.3 3841.5 4514.2 4170.7 4218.3 4937.6 4187 3952.5 TRUE FALSE FALSE 3486.722153 3798.633563 3821.294684 3998.172974 4181.19646 4091.150846 4381.001244 5499.676426 4014.410088 3928.990354 0.887434643 0.966821809 0.97258948 1.017608244 1.064191073 1.041272815 1.11504505 1.39976837 1.021740887 1 11.93994291 -1 0.58752545 0.951690798 26.1639521 0.883157808 0.044635487 35.71068341 0.265244077 0.00915084 1155.226848 0.1 1 25.2122613 LFQT(ph)NTELLELT(ph)T(ph)KT(ph)IEES(ph)ERK ddPTM_HeLa_CUDC101_4h_R1 1 LFQTNTELLELTTKTIEESERK 22 2 Q8NB49;A0A067XG54;Q8NB49-2;Q8NB49-3;Q8NB49-4 Q8NB49 ATP11C Phospholipid-transporting ATPase IG;Phospholipid-transporting ATPase 5 0 LFQT(0.5)NT(0.5)ELLELT(1)T(1)KT(1)IEES(1)ERK 47.397 0.022498 2658000 765.06 517.42 655.65 773.3 847.51 1006.7 807.68 1086.2 413.55 397.64 TRUE FALSE FALSE 675.3808266 533.3610969 691.0964222 804.8385165 784.9908758 987.4988748 838.8324882 1209.848617 396.503294 395.2748196 1.708636101 1.349342459 1.748394757 2.036149222 1.985936966 2.498258998 2.122150075 3.060778368 1.003107899 1 8.626712243 -1 0.140324751 0.805676945 7.775719073 0.87270628 0.218019928 18.88569736 0.174975879 0.587318111 26.52332673 0.1 1 6.970042128 up VAVVAGYGDVGK ddPTM_HeLa_CUDC101_4h_R1 2 VAVVAGYGDVGK 12 0 P23526-2;P23526 P23526-2 AHCY Adenosylhomocysteinase 0 0 ; ; 170.99 2.22E-05 1428760 2604.8 1849.59 2244.42 1972.44 2334.5 2295.2 2158.34 1733.23 2159.72 1681.03 FALSE FALSE TRUE 2299.469293 1906.573676 2365.760134 2052.884629 2162.288586 2251.422884 2241.587897 1930.533897 2070.695427 1671.031159 1.376078046 1.140956388 1.415748666 1.228513674 1.2939846 1.347325496 1.341439916 1.155294973 1.239172242 1 10.70652292 -9.397754712 0.978042912 0.989338242 1.296055293 0.142079943 0.112272549 0.292398969 0.471618095 0.066236177 0.014698056 4.00E-10 9.397754712 0.306717051 ANS(ph)TSDSVFTETPSPVLK ddPTM_HeLa_CUDC101_4h_R1 3 ANSTSDSVFTETPSPVLK 18 0 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 1 0 ANS(0.632)T(0.332)S(0.036)DS(0.001)VFTETPSPVLK;ANS(0.742)T(0.225)S(0.03)DS(0.003)VFTETPSPVLK;ANS(0.957)T(0.041)S(0.002)DSVFTETPSPVLK ;; 221.86 5.42E-33 71828000 5830.7 4243.2 5107.8 5525.4 6919.3 8178.8 9976.5 13562.8 3551.5 4209 TRUE FALSE FALSE 5147.234185 4373.927963 5383.943118 5750.749695 6408.877024 8022.803017 10361.29695 15106.73433 3405.105667 4183.964681 1.23022888 1.045402697 1.286804151 1.374473767 1.531771301 1.917512128 2.476430309 3.610626638 0.813846657 1 12.03065496 -1 0.483517049 1.085344816 75.07587703 0.982401578 0.106782504 5.668819896 0.056720633 0.016459357 425.3043665 0.1 1 73.99053221 up SPGS(ph)NSKVPEIEVTVEGPNNNNPQTSAVR ddPTM_HeLa_CUDC101_4h_R1 1 SPGSNSKVPEIEVTVEGPNNNNPQTSAVR 29 1 P78347-2;P78347-4;P78347-3;P78347;A0A494C1K3 P78347-2 GTF2I General transcription factor II-I 1 0 S(0.033)PGS(0.478)NS(0.478)KVPEIEVT(0.01)VEGPNNNNPQTSAVR 106.06 1.81E-10 29611000 951.13 1162.6 897.09 1084.2 2243.2 1365.1 1303.8 2136.6 1243.2 900.37 TRUE FALSE FALSE 839.6399832 1198.418328 945.5893989 1128.418362 2077.723605 1339.062992 1354.088003 2379.821908 1191.95477 895.0145592 0.938129972 1.33899311 1.056507282 1.26078213 2.321441125 1.496135429 1.512922878 2.658975637 1.331771375 1 9.805767341 -1 0.261994827 0.900669142 11.07862439 0.55274458 0.359603497 21.56260565 0.271971533 0.164864064 99.48266685 0.1 1 10.17795525 VCEEIAIIPSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VCEEIAIIPSKK 12 1 H0YN88;A0A075B716;H3BNC9;P08708;H0YN73 H0YN88 RPS17 40S ribosomal protein S17 0 1 ; VCEEIAIIPSK(1)K;VCEEIAIIPSK(1)K 257.42 4.19E-52 2490160 3373 2418.1 2067.65 1890.24 3223.9 2569 2918.5 2341.8 4004.1 2751.7 FALSE TRUE FALSE 2977.622053 2492.598795 2179.433413 1967.332158 2986.07932 2520.000605 3031.067523 2608.381046 3839.049303 2735.332766 1.088577628 0.911259802 0.79677085 0.719229551 1.091669488 0.921277527 1.108116555 0.953588199 1.40350357 1 11.41750064 -7.2519978 24.47343849 1.041828324 0.928569223 0.218136132 0.159923632 681.315207 1766032.13 0.019706418 0.023961031 5.60E-08 7.2519978 -0.113259102 VCEVCSAYLGLHDNDRR ddPTM_HeLa_CUDC101_4h_R1 2 VCEVCSAYLGLHDNDRR 17 1 Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2;Q9Y383;B8ZZ10;A8MYV2;Q9NQ29-2;Q9NQ29;Q9NQ29-3 Q96HJ9-2;Q9NQ29 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 0 0 ; ; 71.529 0.016095 37598000 7294.3 5449.6 5393.9 5123.9 7794.6 6956.4 6339 6732.5 6884.6 2762.1 FALSE FALSE TRUE 6439.273211 5617.495717 5685.51055 5332.874789 7219.607887 6823.71826 6583.497353 7498.900586 6600.813874 2745.670906 2.345245818 2.045946477 2.070718139 1.942284772 2.629451283 2.485264437 2.397773651 2.731172395 2.404080496 1 11.422943 -10.02591124 0.314904864 2.05E-14 2.482821563 0 0.485782192 1.681743708 0.147517084 1.560102885 0.110137972 9.42E-11 10.02591124 2.482821563 QLLDS(ph)DEEQEEDEGR ddPTM_HeLa_CUDC101_4h_R1 2 QLLDSDEEQEEDEGR 15 0 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 0 QLLDS(1)DEEQEEDEGR;QLLDS(1)DEEQEEDEGR ; 239.93 1.22E-43 93970000 2973.8 2213.75 2528.52 2150.87 2423.4 2537.56 2171.88 1793.72 2438.2 2762.4 TRUE FALSE FALSE 2625.215672 2281.953014 2665.21944 2238.591775 2244.63061 2489.160271 2255.650139 1997.909834 2337.696364 2745.969122 0.956025197 0.831019182 0.970593376 0.815228313 0.817427477 0.906477881 0.82144046 0.727579133 0.851319247 1 11.42309969 -1 0.127449543 1.060409427 0.077278928 0.245629767 0.070573309 34.29654176 0.296316395 0.183286417 6.063629791 0.1 1 -0.983130499 GLFS(ph)DEEDSEDLFSSQSASNLK ddPTM_HeLa_CUDC101_4h_R1 3 GLFSDEEDSEDLFSSQSASNLK 22 0 A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5 A0A0A0MR88 FAM21C WASH complex subunit FAM21C 1 0 GLFS(1)DEEDSEDLFSSQSASNLK;GLFS(1)DEEDSEDLFSSQSASNLK;GLFS(0.999)DEEDS(0.001)EDLFSSQSASNLK ;; 166.75 2.11E-08 38735400 11611.7 9850.2 8756.08 8644.45 11023.6 9812.8 8831.96 7498.7 11387.2 11097 TRUE FALSE FALSE 10250.59413 10153.67299 9229.46017 8997.008036 10210.41099 9625.637189 9172.611656 8352.321697 10917.8148 11030.99455 0.929253848 0.920467592 0.83668432 0.815611683 0.925611099 0.872599215 0.831530794 0.757168509 0.989739841 1 13.42927525 -1 0.071382256 1.166554729 0.205792621 0.736937611 0.038203576 83.74003846 0.444996656 1.049050227 8.103734829 0.1 1 -0.960762108 FACHS(ph)ASLTVR ddPTM_HeLa_CUDC101_4h_R1 2 FACHSASLTVR 11 0 Q15233;Q15233-2;C9JYS8;C9IZL7 Q15233 NONO Non-POU domain-containing octamer-binding protein 1 0 FACHS(0.998)AS(0.002)LTVR;FACHS(0.991)AS(0.007)LT(0.002)VR ; 88.224 0.017574 13570700 5163.1 4261.8 3933 3957.4 5276.1 4833.8 4628.9 4976.6 4393.9 4072.7 TRUE FALSE FALSE 4557.889245 4393.101007 4145.629877 4118.799877 4886.892614 4741.603319 4807.438224 5543.116028 4212.781582 4048.475399 1.125828564 1.085124787 1.023997794 1.017370608 1.207094556 1.171207146 1.1874688 1.369186047 1.040584706 1 11.983163 -1 0.403764094 1.050703169 6.101724189 0.776848332 0.051419307 26.4235334 0.310273664 0.014793363 107.6443604 0.1 1 5.05102102 SS(ph)PNPFVGSPPK ddPTM_HeLa_CUDC101_4h_R1 1 SSPNPFVGSPPK 12 0 P98082-3;P98082 P98082-3 DAB2 Disabled homolog 2 1 0 S(0.195)S(0.805)PNPFVGSPPK 113.69 0.00049564 0 1540.2 1574.7 1620.5 1475.2 1578.7 2065.9 1790.4 2362.5 1572.4 1673.5 TRUE FALSE FALSE 1359.660091 1623.214641 1708.109132 1535.365032 1462.242446 2026.4964 1859.456328 2631.43745 1507.585006 1663.545948 0.817326442 0.97575582 1.026788069 0.922947175 0.878991319 1.218178796 1.117766738 1.581824328 0.906247891 1 10.700046 -1 0.643891776 0.920084432 56.65095797 0.832251308 0.086317501 60.38660919 0.369431873 0.016385764 4800.963012 0.1 1 55.73087354 VDASGELEDVEWEDWE ddPTM_HeLa_CUDC101_4h_R1 1 VDASGELEDVEWEDWE 16 0 Q9NW68-9;Q9NW68-8;Q9NW68;Q9NW68-7 Q9NW68-9 BSDC1 BSD domain-containing protein 1 0 0 114.83 0.0058325 2506800 1909.3 1639.3 1541.8 1292.4 1973.4 1816.1 1733.5 1891.5 2426.6 1645.1 FALSE FALSE TRUE 1685.494748 1689.80489 1625.154372 1345.109658 1827.826214 1781.460918 1800.361676 2106.820714 2326.574521 1635.314872 1.030685146 1.033320811 0.993786823 0.822538632 1.117721269 1.08936875 1.100926621 1.288327251 1.42270737 1 10.67535273 -3.797515997 0.884172373 1.006334262 1.696310012 0.099974272 0.148960348 2.265797309 0.751253648 0.010725922 1.837045381 0.000159398 3.797515997 0.689975749 VDATEESDLAQQYGVR ddPTM_HeLa_CUDC101_4h_R1 1 VDATEESDLAQQYGVR 16 0 P07237;H7BZ94;I3L3U6;I3NI03 P07237 P4HB Protein disulfide-isomerase 0 0 234.49 1.70E-42 7180000 2224.5 1828.9 2030.1 1972 2858.4 2906.5 2327.2 2397.5 3103.8 2263.1 FALSE FALSE TRUE 1963.747482 1885.246241 2139.853347 2052.426684 2647.541527 2851.063355 2416.960884 2670.421709 2975.86005 2249.638981 0.872916721 0.838021681 0.951198555 0.912336024 1.176873956 1.267342618 1.074377224 1.187044558 1.322816717 1 11.13547778 -5.759220236 24.99229971 0.929299784 1.175616824 0.275654725 0.13817649 22.15917494 249554.0458 0.01032158 0.019870442 1.74E-06 5.759220236 0.246317041 VDDDLGTIESLEEAK ddPTM_HeLa_CUDC101_4h_R1 1 VDDDLGTIESLEEAK 15 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 0 190.1 1.93E-10 3102500 1709.2 1314 1546.4 1407.2 2087.7 1837.3 1753.2 1588.9 1723.8 1762.5 FALSE FALSE TRUE 1508.850167 1354.482783 1630.003062 1464.591698 1933.69453 1802.256564 1820.821511 1769.773953 1652.744234 1752.016572 0.861207703 0.773099299 0.930358244 0.835946259 1.103696484 1.028675523 1.039271854 1.010135396 0.943338243 1 10.77480071 -5.756857977 24.99998219 0.912987658 1.043806082 0.565057902 0.064768391 93.1931655 508533.4227 0.011586114 0.0225615 1.75E-06 5.756857977 0.130818424 GLEATAS(ph)PGLLK ddPTM_HeLa_CUDC101_4h_R1 1 GLEATASPGLLK 12 0 H0YFS7;E7EW59;F5H433;Q9Y467 H0YFS7 SALL2 Sal-like protein 2 1 0 GLEAT(0.018)AS(0.982)PGLLK 79.82 0.035555 11253000 2965.5 2514.6 2469.2 2278.4 2724 2334.8 2478.5 1690.8 2782.6 2865.6 TRUE FALSE FALSE 2617.888585 2592.071845 2602.692421 2371.323 2523.055947 2290.26758 2574.096575 1883.273838 2667.90005 2848.555284 0.919023268 0.909960168 0.913688576 0.832465149 0.885731782 0.804010227 0.903649857 0.661132978 0.93658005 1 11.47601469 -1 0.150214782 1.022618444 0.033133689 0.633911293 0.053289869 26.38960325 0.256218055 0.100222281 5.716466571 0.1 1 -0.989484755 VDDESMQR ddPTM_HeLa_CUDC101_4h_R1 4 VDDESMQR 8 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 ;;; ;;; 132.57 0.025614 62948900 10326.4 6939.4 9567.8 10433.1 9737.7 8628.8 8151.9 5854.6 9921.5 9529.3 FALSE FALSE TRUE 9115.955046 7153.194689 10085.06421 10858.60691 9019.369271 8464.220017 8466.321514 6521.063999 9512.531571 9472.6193 0.962347874 0.755144323 1.06465423 1.146315139 0.952151563 0.893545887 0.893767737 0.688411916 1.004213436 1 13.20954769 -3.973736611 1.123253587 0.979700235 0.385140778 0.457366658 0.095502599 1.991687856 1.322466402 0.014389627 1.625503724 0.000106234 3.973736611 -0.594559457 VDDFLANEAK ddPTM_HeLa_CUDC101_4h_R1 1 VDDFLANEAK 10 0 P52209-2;P52209;K7EMN2;K7EM49;K7EPF6 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 0 114.83 0.036352 3686300 1335.4 1026.1 799.73 1008.6 1216.2 1057.8 883.66 941.54 1256.6 1247.5 FALSE FALSE TRUE 1178.866436 1057.712925 842.9658229 1049.735068 1126.483349 1037.624227 917.7430622 1048.721108 1204.802416 1240.079815 0.95063755 0.852939393 0.679767393 0.846506052 0.908395843 0.836739874 0.740067737 0.845688395 0.971552316 1 10.27621726 -7.259030655 3.063393936 0.978748152 0.810968985 0.601602888 0.05999342 0.127855135 2.396869949 0.010837965 0.012847996 5.51E-08 7.259030655 -0.167779168 LSDVDANTAIKHEEQS(ph)NEDIPIAEQSSK ddPTM_HeLa_CUDC101_4h_R1 1 LSDVDANTAIKHEEQSNEDIPIAEQSSK 28 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 LSDVDANTAIKHEEQS(1)NEDIPIAEQSSK 123.85 8.59E-14 30127000 2167.2 1599.7 2308 1784.9 2499.7 2494.4 2427.8 2729.7 1965.3 1861.6 TRUE FALSE FALSE 1913.164101 1648.984861 2432.777461 1857.695937 2315.302111 2446.823476 2521.441059 3040.438014 1884.289502 1850.52712 1.033848183 0.89108927 1.314640264 1.003873932 1.251158162 1.322230541 1.362552881 1.643011864 1.018244738 1 10.85372056 -1 0.339910493 0.996622277 8.128876049 0.783664087 0.102471611 15.1957785 0.191767635 0.0279852 69.70815224 0.1 1 7.132253772 EIS(ph)QDSLAAR ddPTM_HeLa_CUDC101_4h_R1 1 EISQDSLAAR 10 0 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2;H0YKB1 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 EIS(0.981)QDS(0.019)LAAR 149.23 0.00053982 6330500 1668.4 1566.4 1670.6 1427.3 1898.1 1604.3 1675.9 1731.7 1547.3 1622.4 TRUE FALSE FALSE 1472.832681 1614.658927 1760.917689 1485.511463 1758.080945 1573.70065 1740.540024 1928.829728 1483.519639 1612.749893 0.913243081 1.001183714 1.091872768 0.921104674 1.090113819 0.975787168 1.079237415 1.19598813 0.919869625 1 10.65530701 -1 0.495396022 0.96726439 7.816389754 0.543565202 0.059843528 51.96904772 0.504909856 0.011973648 371.9284321 0.1 1 6.849125364 SAMDSPVPASMFAPEPSS(ph)PGAAR ddPTM_HeLa_CUDC101_4h_R1 2 SAMDSPVPASMFAPEPSSPGAAR 23 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 1 0 SAMDSPVPASMFAPEPS(0.278)S(0.722)PGAAR;SAMDSPVPASMFAPEPS(0.021)S(0.979)PGAAR ; 243.99 1.41E-58 43239000 6829.3 7037.2 6506.3 6518.4 7442.4 7541.3 6723.5 7345.8 6609.9 6763.4 TRUE FALSE FALSE 6028.779807 7254.007791 6858.050258 6784.248527 6893.388979 7397.462267 6982.827647 8182.016179 6337.437124 6723.170996 0.896716714 1.078956313 1.020061852 1.009084631 1.02531811 1.100293637 1.038621158 1.216987666 0.942626199 1 12.71492613 -1 0.341767037 0.957169479 3.551048482 0.622992027 0.051059334 27.69218966 0.349025998 0.018091446 46.53594159 0.1 1 2.593879003 TS(ph)PTPPESATTVK ddPTM_HeLa_CUDC101_4h_R1 1 TSPTPPESATTVK 13 0 Q5M775-4;Q5M775;J3KSG2 Q5M775-4 SPECC1 Cytospin-B 1 0 T(0.42)S(0.58)PTPPESATTVK 136.99 0.00085893 19719000 3207.7 3029 2522 2825.8 3083.1 2896.1 2456.7 2357.6 3187.3 3139.8 TRUE FALSE FALSE 2831.698269 3122.3199 2658.346949 2941.048338 2855.665855 2840.861718 2551.455742 2625.979654 3055.918145 3121.12433 0.907268654 1.000383057 0.851727348 0.942304127 0.914947805 0.910204599 0.817479688 0.841356952 0.97910811 1 11.60785011 -1 0.078907749 1.080812922 0.452711162 0.570708091 0.040584831 104.9227366 0.610068148 0.763444644 7.236242055 0.1 1 -0.62810176 ALVVPEPEPDSDS(ph)NQERK ddPTM_HeLa_CUDC101_4h_R1 1 ALVVPEPEPDSDSNQERK 18 1 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 0 ALVVPEPEPDS(0.358)DS(0.642)NQERK 147.28 4.02E-05 32633000 3825.9 3078 3128.3 3318.7 3718.1 4216.6 4485.3 3135.6 3030.7 2601 TRUE FALSE FALSE 3377.433802 3172.829532 3297.425361 3454.050931 3443.82317 4136.17538 4658.299523 3492.544029 2905.773263 2585.529136 1.306283404 1.227149015 1.275338697 1.33591646 1.331960689 1.599740387 1.801681311 1.35080436 1.123860189 1 11.33624385 -1 0.062789367 0.424162075 3.400479648 0.61288716 0.133582613 120.2082966 0.567904889 5.339469725 32.54719092 0.1 1 2.976317573 DTTKLEPAS(ph)PPEDTSAEVSR ddPTM_HeLa_CUDC101_4h_R1 2 DTTKLEPASPPEDTSAEVSR 20 1 E9PFE2;Q9UHL9-2;Q9UHL9;Q9UHL9-3 E9PFE2 GTF2IRD1 General transcription factor II-I repeat domain-containing protein 1 1 0 DTTKLEPAS(0.998)PPEDT(0.001)SAEVSR;DT(0.064)T(0.223)KLEPAS(0.712)PPEDT(0.001)SAEVSR ; 115.38 3.97E-05 96308000 5005.1 4454.5 4765.8 4378.1 5505.6 4912.4 4849.8 5129.1 4838.4 5036.8 TRUE FALSE FALSE 4418.409765 4591.737865 5023.453564 4556.657842 5099.462857 4818.704155 5036.858411 5712.976011 4638.959104 5006.84089 0.882474571 0.917092827 1.003317995 0.910086408 1.018499083 0.962424064 1.005995302 1.141034065 0.926524171 1 12.28968489 -1 0.756257258 0.945297836 36.90362182 0.660742912 0.041372008 207.7980375 0.821175953 0.008270291 12751.41833 0.1 1 35.95832399 (ac)MEDLDQSPLVS(ph)SSDSPPRPQPAFK ddPTM_HeLa_CUDC101_4h_R1 1 MEDLDQSPLVSSSDSPPRPQPAFK 24 1 Q9NQC3-5;Q9NQC3;Q9NQC3-2;Q9NQC3-4 Q9NQC3-5 RTN4 Reticulon-4 1 0 MEDLDQS(0.22)PLVS(0.388)S(0.388)S(0.004)DSPPRPQPAFK 96.391 3.35E-09 95758000 4254.3 3791.7 2759.2 3904.6 3268.7 4683.6 3537.4 4548.7 3015.3 3534.5 TRUE FALSE FALSE 3755.617403 3908.517783 2908.370698 4063.846465 3027.574513 4594.268133 3673.838703 5066.505622 2891.008058 3513.476637 1.068917711 1.112435968 0.827775733 1.156645364 0.861703329 1.307613116 1.04564199 1.442020581 0.822834006 1 11.77868359 -1 0.820086565 1.027603741 114.1340218 0.441680434 0.144216356 329.8282375 0.990993749 0.017803925 69476.06573 0.1 1 113.1064181 SHDDGNIDLES(ph)DSFLKFDSEPSAVALELPTR ddPTM_HeLa_CUDC101_4h_R1 1 SHDDGNIDLESDSFLKFDSEPSAVALELPTR 31 1 P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-6;P18583-2;P18583-8 P18583-10 SON Protein SON 1 0 SHDDGNIDLES(0.766)DS(0.233)FLKFDS(0.001)EPSAVALELPTR 71.37 1.34E-05 5124800 460.53 387.93 416.78 399.59 533.55 563 594.87 589.15 461 287.83 TRUE FALSE FALSE 406.5473715 399.8816635 439.3123875 415.8870074 494.1910795 552.261713 617.8143352 656.2164546 441.9973849 286.1179744 1.420908185 1.397611123 1.53542394 1.453550789 1.72722836 1.930188812 2.159299277 2.293517057 1.544808172 1 8.160466323 -1 0.175419852 0.955154867 6.799955129 0.799651983 0.165025051 8.362637609 0.089472531 0.128415185 13.01078553 0.1 1 5.844800262 up S(ph)DSYVELSQYR ddPTM_HeLa_CUDC101_4h_R1 1 SDSYVELSQYR 11 0 P52298-3;P52298;F8WE41 P52298-3 NCBP2 Nuclear cap-binding protein subunit 2 1 0 S(0.971)DS(0.029)YVELSQYR 128.36 0.0024336 4550900 925.15 764.86 634.7 773.48 950.3 1127.3 802.29 1207.4 903.86 855.31 TRUE FALSE FALSE 816.7053194 788.42443 669.0138019 805.0258577 880.1982623 1105.798631 833.234594 1344.845536 866.6025082 850.2225781 0.960578254 0.927315329 0.786869014 0.946841308 1.035256279 1.300598995 0.980019368 1.581757025 1.019265461 1 9.731696761 -1 0.74823352 0.965217177 100.1168769 0.679549199 0.12100215 153.212338 0.625240831 0.018772394 25625.38112 0.1 1 99.15165972 SSGVVPQS(ph)APPVPTASSR ddPTM_HeLa_CUDC101_4h_R1 2 SSGVVPQSAPPVPTASSR 18 0 P41162 P41162 ETV3 ETS translocation variant 3 1 0 SSGVVPQS(1)APPVPTASSR;SSGVVPQS(1)APPVPTASSR ; 210.47 4.75E-24 24417000 5717.3 4444.4 6181.8 5827.1 6472 8220.1 10702.3 10600.6 2306.5 2854.2 TRUE FALSE FALSE 5047.126761 4581.326696 6516.006807 6064.754325 5994.573454 8063.315288 11115.0913 11807.32945 2211.425094 2837.223091 1.778896688 1.614722053 2.296614188 2.137566955 2.112831195 2.841974363 3.917595105 4.1615795 0.779432925 1 11.47026388 -1 0.24535646 1.109938291 21.38101889 0.929742776 0.280108722 8.282765997 0.102831263 0.159517492 69.6661837 0.1 1 20.2710806 up NCES(ph)DTEEDIAR ddPTM_HeLa_CUDC101_4h_R1 3 NCESDTEEDIAR 12 0 Q9UIK4 Q9UIK4 DAPK2 Death-associated protein kinase 2 1 0 NCES(0.981)DT(0.019)EEDIAR;NCES(0.995)DT(0.005)EEDIAR;NCES(0.909)DT(0.091)EEDIAR ;; 204.67 4.51E-17 44235000 10155.4 8549.6 9846.2 9279.6 9811.7 10193.5 9443.1 10057.2 9336.8 9825 TRUE FALSE FALSE 8964.999407 8813.003042 10378.51536 9658.062198 9087.910439 9999.075971 9807.32353 11202.071 8951.933152 9766.560463 0.91792801 0.902365073 1.062658179 0.988890842 0.930512894 1.023807307 1.004173738 1.146982199 0.916590153 1 13.25363486 -1 0.808323952 0.96346146 48.89756232 0.565391109 0.048069108 299.6292323 0.946649513 0.007958217 26338.06864 0.1 1 47.93410086 VDEFPLCGHMVSDEYEQLSSEALEAAR ddPTM_HeLa_CUDC101_4h_R1 4 VDEFPLCGHMVSDEYEQLSSEALEAAR 27 0 X1WI28;P27635;B8A6G2;A6QRI9 X1WI28 RPL10 60S ribosomal protein L10 0 0 ;;; ;;; 149.07 1.65E-09 29223400 5835 4733.9 4517.21 5346.3 5567.3 5246.3 4944.9 4826.46 5722.9 2043.13 FALSE FALSE TRUE 5151.030145 4879.745848 4761.424036 5564.345223 5156.611371 5146.235568 5135.626449 5375.884697 5486.99964 2030.977372 2.536232169 2.402658895 2.344400338 2.739737675 2.538980218 2.533871445 2.528647793 2.646944654 2.701654738 1 10.98795845 -9.280852721 0.552035204 0.703695513 2.577589596 0 0.540137036 0.162121291 0.06854571 0.160143915 0.025546085 5.24E-10 9.280852721 1.873894083 KEES(ph)DEEETASKAER ddPTM_HeLa_CUDC101_4h_R1 2 KEESDEEETASKAER 15 2 Q9BY89;A0A1B0GVJ7;Q9BY89-2 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 KEES(1)DEEETASKAER;KEES(1)DEEETASKAER ; 100.77 0.0045992 51215000 4108.3 4670.3 5410.9 4757.4 5925.5 5088.2 5475.3 6769.4 5231.2 4088.5 TRUE FALSE FALSE 3626.731302 4814.186407 5703.429621 4951.427335 5488.38767 4991.151063 5686.484155 7540.001133 5015.567722 4064.18142 0.89236452 1.184540233 1.403340312 1.218308639 1.350428808 1.228082742 1.399170846 1.85523242 1.23409051 1 11.98874909 -1 0.246691296 0.919184374 6.015206858 0.562369339 0.163592421 18.30380081 0.227585921 0.08695616 38.98662211 0.1 1 5.096022484 VDENFDCVEADDVEGK ddPTM_HeLa_CUDC101_4h_R1 2 VDENFDCVEADDVEGK 16 0 O14929;O14929-2 O14929 HAT1 Histone acetyltransferase type B catalytic subunit 0 0 ; ; 238.67 8.96E-43 131730000 8225.4 6963.5 6916.2 6699.4 7773.1 6869.5 6386.2 6540.5 7847.9 3405.4 FALSE FALSE TRUE 7261.231081 7178.037181 7290.110692 6972.630489 7199.693899 6738.475733 6632.517873 7285.044082 7524.40624 3385.144529 2.145028379 2.120452205 2.153559657 2.059773351 2.12684978 1.990602078 1.95930124 2.152062938 2.222772521 1 11.72500172 -9.187971032 0.750096041 0.934928183 2.092741427 0 0.381511976 0.109406886 0.101702758 0.077381516 0.017795061 6.49E-10 9.187971032 1.157813244 TNLSGRQS(ph)PSFK ddPTM_HeLa_CUDC101_4h_R1 2 TNLSGRQSPSFK 12 1 Q6IN85-4;Q6IN85-2;Q6IN85 Q6IN85-4 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A 1 0 TNLS(0.001)GRQS(0.984)PS(0.016)FK;TNLS(0.001)GRQS(0.999)PSFK ; 77.372 0.022844 174260000 7940 8006.9 7456.1 8375.7 10176.3 8757.9 10630.3 16730.7 8480.8 6805 TRUE FALSE FALSE 7009.285236 8253.583098 7859.199319 8717.297249 9425.614623 8590.857649 11040.31423 18635.25526 8131.217834 6764.523557 1.036183136 1.220127778 1.161825996 1.288678674 1.393389282 1.269987099 1.63209044 2.754851114 1.202038512 1 12.72377261 -1 0.671258667 1.057016794 171.7417947 0.933080688 0.125117486 37.21649784 0.20585947 0.021615921 9499.801048 0.1 1 170.6847779 up SKDAS(ph)PINRWSPT(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SKDASPINRWSPTR 14 2 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 0 S(0.275)KDAS(0.724)PINRWS(0.379)PT(0.622)R 119.51 0.00035287 0 1622.6 1643 1249.1 1583.3 1432.6 1826.7 1800.7 1779 1528.8 1275.6 TRUE FALSE FALSE 1432.401288 1693.618883 1316.630124 1647.873818 1326.919952 1791.858741 1870.153602 1981.514169 1465.782217 1268.012674 1.129642721 1.335648229 1.038341454 1.29957204 1.046456379 1.413123683 1.474869802 1.562692715 1.155968112 1 10.30835345 -1 0.243706344 1.022461099 4.468953434 0.618573232 0.116628178 18.4465745 0.228575757 0.06183329 26.1406927 0.1 1 3.446492335 VDEVPDGAVK(ac)PPTNK ddPTM_HeLa_CUDC101_4h_R1 2 VDEVPDGAVKPPTNK 15 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 0 1 ; VDEVPDGAVK(1)PPTNK;VDEVPDGAVK(1)PPTNK 215.87 1.35E-20 1407500 1248.3 969.11 550.93 514.25 1350.51 1615.33 1561.66 916.23 1108.28 1156.47 FALSE TRUE FALSE 1101.976166 998.9671304 580.7149423 535.2233378 1250.885568 1584.520272 1621.893749 1020.52992 1062.596229 1149.591265 0.958580845 0.868975923 0.505149056 0.465577074 1.08811332 1.378333604 1.410843835 0.887732841 0.924325246 1 10.16690529 -5.526873245 24.99512872 0.894027535 1.242335183 0.391071234 0.228991846 109.9694131 688120.9416 0.036605255 0.073466137 2.97E-06 5.526873245 0.348307649 VDFDQLQDNLCQMER ddPTM_HeLa_CUDC101_4h_R1 1 VDFDQLQDNLCQMER 15 0 K7EKZ0;A0A0A0MTS9;K7EP24;K7ER94;Q2V2M9-2;Q2V2M9;Q2V2M9-3;Q2V2M9-4 K7EKZ0 FHOD3 FH1/FH2 domain-containing protein 3 0 0 50.563 0.035596 2910400 487.24 479.09 452.82 253.11 320.33 486.12 474.07 467.44 516.8 484.44 FALSE FALSE TRUE 430.1264658 493.850195 477.3008189 263.4329198 296.6998941 476.8480709 492.3550387 520.6514801 495.4972853 481.5585293 0.893196651 1.02552476 0.991158478 0.547042371 0.616124263 0.990218306 1.022419932 1.081180061 1.028945092 1 8.911567346 RGTGQS(ph)DDS(ph)DIWDDTALIK ddPTM_HeLa_CUDC101_4h_R1 2 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 2 0 RGT(0.428)GQS(0.571)DDS(0.83)DIWDDT(0.171)ALIK;RGT(0.473)GQS(0.536)DDS(0.68)DIWDDT(0.312)ALIK ; 66.868 0.0096409 55197000 6973.8 6145.1 6686 5982.9 7967.4 7343.5 6574.9 7877.3 7120.3 6350.7 TRUE FALSE FALSE 6156.341736 6334.423247 7047.465384 6226.908522 7379.660775 7203.434973 6828.496095 8774.019991 6826.79822 6312.925754 0.975196284 1.003405314 1.116354866 0.986374427 1.168976329 1.141061253 1.081669001 1.389850021 1.081400049 1 12.62409307 -1 0.381265468 0.988324378 5.914667975 0.646027398 0.070122355 21.14443991 0.256300119 0.015520324 77.96684697 0.1 1 4.926343597 NRENSS(ph)PCQGNGEQAGR ddPTM_HeLa_CUDC101_4h_R1 1 NRENSSPCQGNGEQAGR 17 1 Q5T5X7 Q5T5X7 BEND3 BEN domain-containing protein 3 1 0 NRENS(0.144)S(0.856)PCQGNGEQAGR 140.27 0.00011276 3710500 310.88 320.55 298.69 416.47 361.94 464.45 440 501.85 339.84 196.05 TRUE FALSE FALSE 274.4391177 330.4257656 314.8380849 433.4554467 335.2404073 455.5913901 456.9709474 558.9785755 325.8316514 194.8838859 1.408218624 1.695500703 1.615516252 2.224172844 1.720205884 2.337758137 2.344837006 2.868264726 1.671927106 1 7.606470995 -1 0.152060283 0.759371074 8.356989128 0.732934217 0.268020652 11.49961711 0.112563054 0.326083993 19.41748197 0.1 1 7.597618054 up TSDPDVILCNS(ph)VELIR ddPTM_HeLa_CUDC101_4h_R1 2 TSDPDVILCNSVELIR 16 0 Q96CW6;A0A087X0P9 Q96CW6 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS 1 0 TSDPDVILCNS(1)VELIR;T(0.071)S(0.036)DPDVILCNS(0.893)VELIR ; 165.16 2.47E-05 34508000 5569 4990.2 4795.7 4611.4 5829.5 5487 5886.5 8348.6 5085.4 2050.92 TRUE FALSE FALSE 4916.210262 5143.942147 5054.970048 4799.472824 5399.469399 5382.344617 6113.544277 9298.970878 4875.77766 2038.721037 2.411418813 2.523122122 2.479480987 2.35415868 2.648459157 2.64005939 2.998715453 4.561178656 2.391586476 1 10.99344867 -1 0.090372283 5.12E-13 10.30404866 0.558416961 0.545107193 52.01096043 0.340476159 5.185900085 66.76572553 0.1 1 10.30404866 LQDSSDPDTGSEEEGS(ph)SRLS(ph)PPHSPR ddPTM_HeLa_CUDC101_4h_R1 1 LQDSSDPDTGSEEEGSSRLSPPHSPR 26 1 Q92974-2;Q92974;V9GYM8;A0A5F9ZI21;Q92974-3;V9GYF0 Q92974-2 ARHGEF2 Rho guanine nucleotide exchange factor 2 2 0 LQDS(0.009)S(0.006)DPDT(0.045)GS(0.363)EEEGS(0.404)S(0.405)RLS(0.723)PPHS(0.044)PR 55.163 0.010524 5020800 1598.3 1434.6 1227.7 1405.2 1620.6 1704.5 1712.1 2119.9 1508.5 1296.5 TRUE FALSE FALSE 1410.949697 1478.798326 1294.073176 1462.51013 1501.051567 1671.989502 1778.136271 2361.220847 1446.318992 1288.78836 1.09478774 1.147433024 1.004100608 1.134794645 1.164699816 1.297334422 1.379696097 1.832124591 1.122231575 1 10.33179965 -1 0.534760435 1.046103806 32.44004829 0.946868185 0.053661336 15.33478961 0.133937189 0.009718334 552.2498804 0.1 1 31.39394448 CPSQS(ph)SSRPAAMISQPPTPPTGQPVREDAK ddPTM_HeLa_CUDC101_4h_R1 1 CPSQSSSRPAAMISQPPTPPTGQPVREDAK 30 2 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 CPS(0.082)QS(0.277)S(0.277)S(0.277)RPAAMIS(0.082)QPPT(0.004)PPT(0.001)GQPVREDAK 45.14 0.015924 28423000 585.96 557.92 512.9 755.88 749.94 592.3 790.89 953.23 395.57 314.11 TRUE FALSE FALSE 517.2746571 575.1088539 540.6289254 786.7080536 694.6184203 581.0028643 821.3948922 1061.74185 379.2644372 312.2416598 1.656648435 1.841870987 1.731443927 2.519548654 2.224618012 1.860747425 2.630638374 3.400384981 1.214650337 1 8.286519226 -1 0.130659237 0.642915959 8.616918564 0.812134582 0.291714612 24.12035377 0.212274834 0.995133759 35.60535022 0.1 1 7.974002605 up VDIDAPDVDVHGPDWHLK ddPTM_HeLa_CUDC101_4h_R1 2 VDIDAPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 118.71 7.24E-05 81701000 7439.9 6990.3 6962.8 6583.96 7725.8 7227.9 6810.3 7482.3 7478.4 7326.7 FALSE FALSE TRUE 6567.8062 7205.662857 7339.230029 6852.482347 7155.883126 7090.03985 7072.975552 8334.054788 7170.137187 7283.120463 0.901784645 0.989364778 1.007704056 0.940871757 0.982529832 0.973489301 0.971146309 1.14429726 0.984486969 1 12.83034099 -4.258014466 4.5230672 0.961604778 1.156801337 0.730046886 0.030794955 0.096218966 4.985457979 0.005568925 0.059729501 5.52E-05 4.258014466 0.195196559 VDIDAPDVEVHDPDWHLK ddPTM_HeLa_CUDC101_4h_R1 4 VDIDAPDVEVHDPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ;;; ;;; 210.08 3.77E-24 137177000 32967.3 31649.4 29673.3 27917.5 32674.6 32261.5 30274.9 32074.8 32217.1 31407.2 FALSE FALSE TRUE 29102.92307 32624.4805 31277.52835 29056.09632 30264.25985 31646.16564 31442.61303 35726.06558 30889.0975 31220.38858 0.932176837 1.044973557 1.001830207 0.93067696 0.969374862 1.013637789 1.007117927 1.144318415 0.989388631 1 14.93020087 -2.837634684 1.016181703 0.973499043 3.747380777 0.656835868 0.033872537 13.43585667 1.0105654 0.0057588 75.22196216 0.001453334 2.837634684 2.773881734 VDIDAPDVSIEGPDAK ddPTM_HeLa_CUDC101_4h_R1 2 VDIDAPDVSIEGPDAK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 322.92 5.21E-166 99899000 6691.6 6418.9 5744.6 5825 6285.6 5618.3 5722.6 6358.6 7012.8 6799.6 FALSE FALSE TRUE 5907.220792 6616.658701 6055.170452 6062.568678 5821.923811 5511.140288 5943.322599 7082.437322 6723.729416 6759.155677 0.873958387 0.978917933 0.895847165 0.896941714 0.861338914 0.815359277 0.879299558 1.047828702 0.994758774 1 12.72262733 -9.442426608 0.868810789 1.008401343 0.89967948 0.25476182 0.06158146 0.809351647 0.948295301 0.062501198 0.01148996 3.61E-10 9.442426608 -0.108721863 FLPISS(ph)TPQPERR ddPTM_HeLa_CUDC101_4h_R1 3 FLPISSTPQPERR 13 1 J3KNG6;Q08AE8-4;Q08AE8-3;Q08AE8-5;Q08AE8-2;Q08AE8 J3KNG6 SPIRE1 Protein spire homolog 1 1 0 FLPIS(0.175)S(0.794)T(0.032)PQPERR;FLPIS(0.113)S(0.815)T(0.072)PQPERR;FLPIS(0.057)S(0.744)T(0.199)PQPERR ;; 92.269 0.0082079 24131600 7267.3 7332.8 5997.7 6774.6 7758.1 7499.2 6906 7323.4 6112.8 6378.6 TRUE FALSE FALSE 6415.438111 7558.714876 6321.953804 7050.89747 7185.800419 7356.165255 7172.366733 8157.066254 5860.827797 6340.659804 1.011793458 1.192102259 0.997049834 1.112013211 1.133289065 1.160157694 1.131170407 1.286469627 0.924324594 1 12.63041726 -1 0.197288308 0.978197545 2.249859232 0.661466569 0.060486121 21.83100876 0.248772384 0.052781197 8.611267625 0.1 1 1.271661687 TEGDEEAEEEQEENLEAS(ph)GDYKYSGR ddPTM_HeLa_CUDC101_4h_R1 1 TEGDEEAEEEQEENLEASGDYKYSGR 26 1 P12956;P12956-2 P12956 XRCC6 X-ray repair cross-complementing protein 6 1 0 TEGDEEAEEEQEENLEAS(0.994)GDY(0.001)KYS(0.005)GR 82.234 1.63E-05 7963800 1149 888.8 960.14 1049.8 1387 1366 1237.5 1601.8 1210.8 922.79 TRUE FALSE FALSE 1014.315962 916.1828745 1012.048073 1092.615382 1284.683773 1339.945826 1285.23079 1784.142437 1160.890312 917.301204 1.105761071 0.998780848 1.103288722 1.191119533 1.400503747 1.46074792 1.401100079 1.944990838 1.265549752 1 9.841251723 -1 0.348340666 1.022541188 11.03157854 0.823145721 0.113680706 10.77855019 0.135184329 0.024883507 71.68472204 0.1 1 10.00903735 VDIDTPDIDIHGPEGK ddPTM_HeLa_CUDC101_4h_R1 2 VDIDTPDIDIHGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 84.508 0.011465 17656100 4882.3 3988.79 3359.89 3693.55 4200.57 4497.8 3852.03 4187.8 4232.11 4583.96 FALSE FALSE TRUE 4310.004195 4111.679892 3541.535817 3844.188934 3890.70232 4412.011959 4000.604087 4664.522224 4057.660635 4556.694402 0.945862025 0.902338303 0.777216004 0.84363545 0.853843154 0.968248377 0.877961903 1.023663606 0.89048338 1 12.1537719 -7.595963495 1.694547905 0.98167544 0.887669918 0.050086723 0.070501752 0.31862944 1.865650784 0.013335327 0.013857572 2.54E-08 7.595963495 -0.094005522 VDIDTPDINIEGSEGK ddPTM_HeLa_CUDC101_4h_R1 1 VDIDTPDINIEGSEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 209.79 8.87E-23 13817000 1831.5 2118 1397.6 1375.3 1680.4 1768.3 1757.7 1843.3 1662.8 1590.1 FALSE FALSE TRUE 1616.814346 2183.25307 1473.158484 1431.390679 1556.44024 1734.572624 1825.495078 2053.133821 1594.25868 1580.642014 1.022884582 1.381244488 0.93200008 0.905575497 0.984688643 1.097384865 1.154907348 1.298923983 1.008614642 1 10.62629495 -4.496287616 1.620545836 1.024738667 1.329649557 0.299701795 0.124331884 0.59958968 2.07532086 0.01797877 0.247951688 3.19E-05 4.496287616 0.30491089 VDIDVPDVDVQGPDWHLK ddPTM_HeLa_CUDC101_4h_R1 2 VDIDVPDVDVQGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 152.9 4.91E-05 46212000 5950.7 5697.5 4494.5 5112 5451.5 4915.2 5243.9 5203.7 5072.8 5171.2 FALSE FALSE TRUE 5253.167967 5873.033222 4737.486265 5320.489456 5049.353706 4821.450749 5446.15898 5796.068174 4863.697037 5140.441472 1.021929341 1.142515337 0.921610778 1.035025782 0.982280167 0.937944878 1.059473006 1.127542878 0.946163294 1 12.32767655 -4.512754957 6.582794174 1.009134463 1.112300354 0.300333822 0.060309975 0.124746582 25.58405898 0.00735379 0.033686581 3.07E-05 4.512754957 0.103165891 VDIDVPDVNIEGPEGK ddPTM_HeLa_CUDC101_4h_R1 2 VDIDVPDVNIEGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 198.48 1.31E-15 112554000 15171.1 14539.9 12331.7 12581 14346 13940.4 13487.7 13727.7 15088.4 14570.8 FALSE FALSE TRUE 13392.76666 14987.85708 12998.389 13094.10756 13287.72416 13674.5101 14007.92511 15290.40588 14466.44977 14484.13223 0.924650952 1.034777703 0.897422696 0.904031208 0.917398705 0.944102821 0.96712215 1.055665996 0.998779183 1 13.82218563 -4.267413858 3.784992458 0.955179454 1.065346862 0.33433913 0.043226755 0.246337423 6.776849814 0.006350406 0.074769493 5.40E-05 4.267413858 0.110167408 VDIDVPDVNLEAPEGK ddPTM_HeLa_CUDC101_4h_R1 2 VDIDVPDVNLEAPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 223.72 7.38E-32 29637000 11288.1 10084 9205 8438.3 9986.1 10055.7 10153.4 10140.6 9507 9450.3 FALSE FALSE TRUE 9964.92603 10394.67609 9702.650144 8782.450347 9249.445298 9863.904276 10545.02004 11294.96491 9115.117436 9394.089195 1.060765533 1.10651239 1.032846287 0.934891096 0.984602669 1.050011776 1.122516491 1.202348059 0.97030348 1 13.19753758 -4.569095721 2.175128406 1.02569645 1.204296713 0.627490374 0.046612568 0.208625359 1.657986996 0.006986063 0.05605914 2.70E-05 4.569095721 0.178600264 GDPPRLS(ph)PDPVAGSAVSQELR ddPTM_HeLa_CUDC101_4h_R1 2 GDPPRLSPDPVAGSAVSQELR 21 1 E9PMR3;E9PMG4;Q9BUR4 E9PMR3 WRAP53 Telomerase Cajal body protein 1 1 0 GDPPRLS(0.996)PDPVAGS(0.003)AVS(0.001)QELR;GDPPRLS(1)PDPVAGSAVSQELR ; 90.1 0.00039224 323610000 4569.6 3600.1 3788.7 3590.1 3854 3790.9 3657 2874.8 3583.1 4139.1 TRUE FALSE FALSE 4033.958415 3711.014814 3993.528582 3736.519796 3569.698098 3718.594899 3798.051715 3202.055612 3435.403101 4114.480449 0.980429599 0.901940077 0.970603368 0.908138911 0.86759389 0.903782372 0.923093878 0.77824057 0.83495429 1 12.00649455 -1 0.172027466 1.020634567 0.217522075 0.02182421 0.063870692 22.45072 0.237475248 0.049830684 4.680742452 0.1 1 -0.803112492 VDIEAPDVSLEGPEGK ddPTM_HeLa_CUDC101_4h_R1 2 VDIEAPDVSLEGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 270.21 6.44E-85 39051000 7072.7 6661.3 5732.5 5889.6 6494.9 6394.2 5966.4 6425.6 7028.7 6500.8 FALSE FALSE TRUE 6243.648828 6866.526757 6042.41629 6129.803345 6015.784167 6272.241288 6196.526047 7157.064331 6738.974011 6462.132952 0.966190091 1.062578998 0.935049826 0.948572768 0.930928567 0.970614708 0.958897951 1.10753901 1.042840508 1 12.65779472 -4.256348082 24.80469996 0.977651582 1.10753907 0.45914924 0.041638713 296.3229497 1443628.287 0.005047731 0.055737955 5.54E-05 4.256348082 0.129887488 VDIEGPDVNIEGPEGK ddPTM_HeLa_CUDC101_4h_R1 2 VDIEGPDVNIEGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 255.85 5.85E-69 114396000 7775.1 6363 6696.9 5995.9 7566.2 6903.4 6560.4 7133 6840 7238.7 FALSE FALSE TRUE 6863.714564 6559.036488 7058.954671 6240.438718 7008.0565 6771.729147 6813.436826 7944.991887 6558.052305 7195.64389 0.953870796 0.911528779 0.981003893 0.867252301 0.973930423 0.941087309 0.946883549 1.104139116 0.911392004 1 12.81290807 -4.257716963 24.59005455 0.961825596 1.104139186 0.547087745 0.040872565 180.2375739 1190571.809 0.00564989 0.05585591 5.52E-05 4.257716963 0.14231359 VDIIENQVMDFR ddPTM_HeLa_CUDC101_4h_R1 1 VDIIENQVMDFR 12 0 A0A0A0MTN3;P21266 A0A0A0MTN3 GSTM3 Glutathione S-transferase Mu 3 0 0 106.29 0.032578 4174800 1300.8 1461.3 1466.6 1253 1632.1 1166.8 1173.2 1281 1522.9 1780 FALSE FALSE TRUE 1148.322196 1506.320921 1545.888832 1304.102756 1511.703235 1144.545234 1218.450717 1426.823862 1460.125417 1769.412481 0.648985021 0.851311346 0.873673521 0.73702586 0.854353211 0.646850436 0.68861881 0.80638284 0.825203526 1 10.78905469 -9.491439041 1.190517978 1.002267285 0.753240521 0.203301517 0.095245313 0.301216491 0.752682234 0.062408661 0.014635205 3.23E-10 9.491439041 -0.249026764 YELEPS(ph)PLTQFILER ddPTM_HeLa_CUDC101_4h_R1 1 YELEPSPLTQFILER 15 0 G5E9X1;B3KQH5;Q9UL03-3;Q9UL03;C9JAV7 G5E9X1 INTS6 Integrator complex subunit 6 1 0 Y(0.003)ELEPS(0.968)PLT(0.029)QFILER 83.204 0.010903 34545000 2405.4 2701.9 2211.8 2274.4 2469.5 2315.1 2542.8 2388.9 2352.9 2355.2 TRUE FALSE FALSE 2123.442658 2785.142336 2331.376598 2367.159863 2287.329905 2270.943325 2640.876648 2660.84272 2255.912466 2341.191166 0.906992427 1.189626194 0.995807874 1.011092087 0.976994078 0.969994829 1.128005558 1.136533726 0.963574653 1 11.19302702 -1 0.440902124 0.972097123 4.870784043 0.222760826 0.076232342 67.23682271 0.739128084 0.017890826 236.7004152 0.1 1 3.89868692 VDINTPDVDVHGPDWHLK ddPTM_HeLa_CUDC101_4h_R1 1 VDINTPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 144.08 6.66E-05 15217000 4515.3 4551.4 4632.5 4454.3 4959.1 4960.5 4874.1 5087.7 4829.8 4838 FALSE FALSE TRUE 3986.023379 4691.623239 4882.946963 4635.965607 4593.277073 4865.886727 5062.09567 5666.863203 4630.7136 4809.223361 0.828828915 0.975546962 1.015329627 0.96397386 0.955097472 1.011782228 1.052580695 1.178332296 0.96288179 1 12.23158822 -1.631318711 0.505773635 0.927299764 5.090618252 0.641622981 0.049806727 28.1517045 0.517750851 0.013773655 118.2981646 0.023371215 1.631318711 4.163318487 VDIQTEDLEDGTCK ddPTM_HeLa_CUDC101_4h_R1 1 VDIQTEDLEDGTCK 14 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4;H7C5L4 O75369-8 FLNB Filamin-B 0 0 245.5 4.72E-55 25985000 1629.5 1396.3 1431.6 1444.9 1443.1 1741.7 1467.3 1344.2 1453.7 1181.3 FALSE FALSE TRUE 1438.49248 1439.318348 1508.996626 1503.829267 1336.645388 1708.479974 1523.894253 1497.218295 1393.777871 1174.273575 1.22500626 1.225709561 1.285046908 1.280646435 1.138274263 1.454924994 1.297733582 1.275016594 1.186927732 1 10.19755284 -9.881505321 0.239609433 0.762395429 1.33511746 0.324237736 0.092103428 3.262174124 0.19942333 0.556412368 0.063270975 1.31E-10 9.881505321 0.572722031 VDISAPDVDVHGPDWHLK ddPTM_HeLa_CUDC101_4h_R1 2 VDISAPDVDVHGPDWHLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 140.22 5.19E-05 64844000 7278.1 7040.5 7039.2 7138.9 7010.1 7141.8 6869.4 7070 7644.7 7385.1 FALSE FALSE TRUE 6424.972151 7257.40946 7419.760444 7430.055199 6492.978889 7005.582064 7134.355059 7874.820222 7329.58223 7341.173097 0.875196929 0.988589884 1.010705012 1.012107343 0.884460672 0.954286457 0.971827658 1.07269235 0.998421115 1 12.8417949 VDK(ac)LDASESLR ddPTM_HeLa_CUDC101_4h_R1 1 VDKLDASESLR 11 1 A0A087WVQ6;Q00610-2;Q00610;J3KS13;K7EJJ5 A0A087WVQ6 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 1 VDK(1)LDASESLR 147.28 0.00013996 975920 1049.5 378.71 294.32 302.93 823.43 488.9 884.77 516.13 498.7 434.04 FALSE TRUE FALSE 926.4792009 390.3776062 310.2318295 315.2847948 762.6872094 479.5750471 918.8958753 574.8841529 478.1433749 431.4583108 2.147320327 0.904786387 0.719030835 0.730742199 1.767696184 1.111521172 2.129744294 1.33242109 1.108202955 1 8.753077357 -9.880631767 2.025905523 0.996397316 1.50094993 0 0.513083685 0.69274043 5.152621496 0.447543507 0.088266038 1.32E-10 9.880631767 0.504552614 AKTQTPPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_HeLa_CUDC101_4h_R1 2 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 1 0 AKTQTPPVSPAPQPT(0.137)EERLPS(0.411)S(0.411)PVY(0.041)EDAAS(0.001)FK;AKTQTPPVSPAPQPT(0.054)EERLPS(0.438)S(0.438)PVY(0.063)EDAAS(0.008)FK ; 72.822 4.10E-06 49297000 1746.33 2840.2 2470.31 2447.81 4947.5 3304 3345.2 5518 2882.8 952.37 TRUE FALSE FALSE 1541.627845 2927.703196 2603.862431 2547.642272 4582.532782 3240.981705 3474.225485 6146.146815 2763.969764 946.7052609 1.62841373 3.092518143 2.750446774 2.691061704 4.840506302 3.423432655 3.669806885 6.492143933 2.919567344 1 9.886771529 -1 0.166702598 0.416875878 21.43340374 0.57775736 0.955794728 17.84494083 0.185223158 1.122493699 93.53441083 0.1 1 21.01652786 VDLGLPEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 VDLGLPEKK 9 1 Q1ED39;H3BMC9 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 0 1 VDLGLPEK(1)K 118.18 0.0016103 457470 474.52 306.73 394.28 341.79 534.5 410.2 316.99 423.98 226.09 254.07 FALSE TRUE FALSE 418.8974849 316.1799877 415.5959694 355.7296735 495.0709999 402.3761184 329.2164105 472.2441694 216.7704745 252.5587803 1.658613826 1.251906536 1.64554156 1.4085025 1.960220901 1.5931979 1.303523916 1.869838652 0.858297123 1 7.980475388 -9.871520405 0.462575827 0.688630976 1.607421371 0.600244583 0.214749202 1.74236632 0.343270345 0.8089459 0.05440557 1.34E-10 9.871520405 0.918790395 (ac)S(ph)KSESPKEPEQLR ddPTM_HeLa_CUDC101_4h_R1 5 SKSESPKEPEQLR 13 2 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.506)KS(0.305)ES(0.189)PKEPEQLR;S(0.601)KS(0.393)ES(0.006)PKEPEQLR;S(0.468)KS(0.468)ES(0.064)PKEPEQLR;S(0.495)KS(0.495)ES(0.009)PKEPEQLR;S(0.869)KS(0.13)ES(0.001)PKEPEQLR ;;;; 128.35 7.88E-16 258432200 12055 17835.7 16840.3 17322 29239.5 19428.9 20798.3 30856.6 18407.3 14723.4 TRUE FALSE FALSE 10641.93117 18385.19678 17750.73756 18028.46603 27082.56034 19058.3261 21600.4974 34369.19062 17648.5433 14635.82456 0.727115246 1.256177723 1.212827981 1.231803918 1.850429419 1.30216962 1.475864739 2.34829206 1.205845508 1 13.83721641 -1 0.278053288 0.844024908 10.76070102 0.615294952 0.265822956 19.51359222 0.248478142 0.116167837 95.04941558 0.1 1 9.916676109 VDLNSNGFICDYELHELFK ddPTM_HeLa_CUDC101_4h_R1 1 VDLNSNGFICDYELHELFK 19 0 P13797;U3KQI3 P13797 PLS3 Plastin-3 0 0 175.56 8.68E-08 25925000 3717.5 3478.1 2870.5 2839.2 3595.6 3443.3 2728.4 3576.3 3504.7 2760 FALSE FALSE TRUE 3281.740285 3585.256138 3025.687913 2954.994848 3330.359751 3377.624789 2833.635302 3983.411536 3360.234783 2743.583397 1.196151095 1.306778625 1.102823379 1.077056688 1.21387225 1.231099734 1.032822733 1.451901021 1.224761305 1 11.42184572 -9.132520174 0.749879122 0.990560532 1.193891055 0 0.133048727 0.726623526 0.692594521 0.088815593 0.021932878 7.37E-10 9.132520174 0.203330523 RTS(ph)FYLPK ddPTM_HeLa_CUDC101_4h_R1 1 RTSFYLPK 8 1 Q9NS23-3;Q9NS23-4;Q9NS23-2;Q9NS23-5;Q9NS23 Q9NS23-3 RASSF1 Ras association domain-containing protein 1 1 0 RT(0.003)S(0.997)FYLPK 110.38 0.023373 36207000 4415.4 3760.5 3436.8 3537.6 4416.1 4036.2 3779.4 3835.4 4469.8 3881.3 TRUE FALSE FALSE 3897.833505 3876.356548 3622.603804 3681.878619 4090.333101 3959.21621 3925.172724 4272.006433 4285.552952 3858.213855 1.01026891 1.004702355 0.938932869 0.954296148 1.060162359 1.026178527 1.017354888 1.107249778 1.110760863 1 11.9137174 -1 0.800410103 0.999353017 27.23726932 0.23673086 0.047077151 316.3200915 1.034429881 0.005139366 15060.25339 0.1 1 26.2379163 FNDS(ph)EGDDTEETEDYRQFR ddPTM_HeLa_CUDC101_4h_R1 1 FNDSEGDDTEETEDYRQFR 19 1 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 1 0 FNDS(1)EGDDTEETEDYRQFR 176.7 4.12E-08 91084000 529.74 699.58 630.56 798.76 1040.2 735.92 1022.3 1218.8 771.39 224.31 TRUE FALSE FALSE 467.6446802 721.1332306 664.6499809 831.3368853 963.4665184 721.8835521 1061.730453 1357.543265 739.5929777 222.9757941 2.097289 3.234132357 2.980816745 3.728372797 4.320946684 3.237497392 4.761639969 6.088298825 3.316920478 1 7.800743292 -1 0.131129211 1.21E-11 19.03173805 0.567693954 0.874052382 16.70546251 0.147407668 1.633132312 59.10434621 0.1 1 19.03173805 VDLVDENFTELR ddPTM_HeLa_CUDC101_4h_R1 1 VDLVDENFTELR 12 0 P61086;D6RDM7;P61086-3 P61086 UBE2K Ubiquitin-conjugating enzyme E2 K 0 0 160.91 0.00062462 3851500 1421.5 1117 1133.8 1245.8 1096.1 1070 860.71 729.63 877.59 1491.7 FALSE FALSE TRUE 1254.873925 1151.413446 1195.096658 1296.609109 1015.242887 1049.591533 893.907873 812.6881299 841.4153688 1482.827302 0.846271122 0.776498682 0.805958088 0.874416803 0.684666977 0.70783127 0.602840177 0.548066608 0.567439895 1 10.53413487 -3.449766079 0.161069925 1.050272185 5.27E-19 0.00690596 0.138138449 6.517096109 0.138104961 0.1085175 1.45728955 0.000355005 3.449766079 -1.050272185 GAFMLEPEGMSPMEPAGVS(ph)PMPGTQK ddPTM_HeLa_CUDC101_4h_R1 1 GAFMLEPEGMSPMEPAGVSPMPGTQK 26 0 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;E5RJN3;Q6IBW4-5 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 0 GAFMLEPEGMS(0.004)PMEPAGVS(0.957)PMPGT(0.04)QK 59.996 0.0029108 4267900 861.72 826.58 772.35 633.49 798.56 891.72 845.98 733.78 837.89 721.72 TRUE FALSE FALSE 760.7104879 852.0459501 814.1055772 659.3264604 739.6518198 874.7119267 878.609732 817.3105492 803.3518196 717.4271773 1.060331295 1.187641028 1.134757092 0.919015171 1.030978256 1.219234445 1.224667478 1.139224405 1.119767755 1 9.486688588 -1 0.148001564 0.98282069 1.74567065 0.090059958 0.090265796 67.11225755 0.645110174 0.203215435 11.0053549 0.1 1 0.76284996 SLKES(ph)EQES(ph)EEEILAQKK ddPTM_HeLa_CUDC101_4h_R1 1 SLKESEQESEEEILAQKK 18 2 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 S(0.018)LKES(0.983)EQES(0.999)EEEILAQKK 90.453 0.029809 43746000 4955.7 4253.1 4530.7 4191 5567 4628.5 5348 5769.1 4236.5 4198.4 TRUE FALSE FALSE 4374.800358 4384.13297 4775.643347 4361.927095 5156.333501 4540.219074 5554.274151 6425.831024 4061.869677 4173.42773 1.048251136 1.050487334 1.144297603 1.045166558 1.235515225 1.087887312 1.330866259 1.539701042 0.973269442 1 12.02701707 -1 0.438342346 1.023489941 11.84025883 0.866217907 0.06126532 15.9185978 0.175881964 0.012150871 154.3328842 0.1 1 10.81676889 YSHSYLS(ph)DSDTEAK ddPTM_HeLa_CUDC101_4h_R1 2 YSHSYLSDSDTEAK 14 0 Q92614;A0A0D9SFK2;Q92614-2;Q92614-3;Q92614-4;Q92614-5 Q92614 MYO18A Unconventional myosin-XVIIIa 1 0 YSHSYLS(0.999)DS(0.001)DTEAK;YSHSYLS(0.992)DS(0.008)DTEAK ; 158.14 3.88E-05 107714000 7641.1 6393.7 6483.4 5753.5 7251.4 6610.2 5494.4 4996.1 7515.6 7555.6 TRUE FALSE FALSE 6745.421841 6590.682319 6833.912215 5988.152599 6716.478669 6484.121448 5706.320848 5564.835829 7205.803787 7510.658955 0.898113186 0.87751053 0.909895158 0.797287247 0.894259573 0.863322578 0.759763009 0.740925112 0.95941033 1 12.87472377 -1 0.087950393 1.115255933 0.133087925 0.777900238 0.037127751 46.90706014 0.299962594 0.463063777 5.591339605 0.1 1 -0.982168008 VDNDENEHQLSLR ddPTM_HeLa_CUDC101_4h_R1 3 VDNDENEHQLSLR 13 0 P06748;P06748-2;P06748-3;E5RGW4 P06748 NPM1 Nucleophosmin 0 0 ;; ;; 225.33 6.89E-33 152041000 11050.3 9476.1 8950.7 8642.2 10476 9899.7 9026.1 9342.8 10687.1 9230.3 FALSE FALSE TRUE 9755.000585 9768.047409 9434.601916 8994.666271 9703.206351 9710.879717 9374.239701 10406.34659 10246.57321 9175.397765 1.063169231 1.064591166 1.028249909 0.980302598 1.057524328 1.058360625 1.021671206 1.134157543 1.116744307 1 13.16355499 -10.62385101 0.006779987 1.35E-05 2.02643465 0 0.048314565 16079.46992 16.50780259 2594.798334 2344.24089 2.38E-11 10.62385101 2.026421186 S(ph)TDEYS(ph)EADEEEEEEEGKPSR ddPTM_HeLa_CUDC101_4h_R1 1 STDEYSEADEEEEEEEGKPSR 21 1 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 2 0 S(0.572)T(0.372)DEY(0.198)S(0.858)EADEEEEEEEGKPSR 114.34 1.47E-05 9482400 3728.4 3010.3 2602.1 2991.1 3232.6 3646.9 3335.9 3812.4 3041.1 2669.7 TRUE FALSE FALSE 3291.362604 3103.043775 2742.777397 3113.089987 2994.137538 3577.341459 3464.56678 4246.388206 2915.744571 2653.820506 1.240235576 1.169274172 1.033520312 1.173059738 1.128236643 1.347996766 1.305501549 1.600103774 1.098696978 1 11.37385508 -1 0.470769173 1.105812628 13.64734815 0.797264152 0.075154581 35.04806129 0.361382607 0.020351308 431.1059761 0.1 1 12.54153552 SAVAVYSYSCEGPEEES(ph)EDDSHLEGRDPDIWHVGFK ddPTM_HeLa_CUDC101_4h_R1 2 SAVAVYSYSCEGPEEESEDDSHLEGRDPDIWHVGFK 36 1 A0A1B0GU26;A0A1B0GTI3;A0A1B0GTY1;A0A1B0GUC3;A0A1B0GV98;A0A1B0GTC5;A0A1B0GTC3;A0A1B0GVH5;Q9C0B1 A0A1B0GU26 FTO Alpha-ketoglutarate-dependent dioxygenase FTO 1 0 S(0.002)AVAVY(0.003)S(0.031)Y(0.1)S(0.108)CEGPEEES(0.409)EDDS(0.346)HLEGRDPDIWHVGFK;SAVAVYSY(0.003)S(0.004)CEGPEEES(0.766)EDDS(0.227)HLEGRDPDIWHVGFK ; 68.412 9.74E-07 23735000 6799.9 6050.2 6307.2 6215.9 7626.9 6861.1 6611 10215 6699.7 3502.4 TRUE FALSE FALSE 6002.82603 6236.599491 6648.18631 6469.411269 7064.278782 6730.235949 6865.988485 11377.83431 6423.53553 3481.567569 1.724173353 1.791319389 1.909538212 1.858189204 2.029051179 1.933105079 1.972096864 3.268020535 1.845012456 1 11.76552131 -1 0.080472071 0.119533016 6.671360052 0.470729487 0.380891097 67.18741525 0.397516232 4.975720875 49.193357 0.1 1 6.551827037 SSGFGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SSGFGSPR 8 0 A1L390-3;A1L390;G3V311;A1L390-2;A0A0U1RR71 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 SSGFGS(1)PR;SSGFGS(1)PR ; 86.882 0.033446 151798000 11870.8 9029.1 10340.2 11547.7 10606.5 9133.2 9898.2 7714.9 11115.2 11395.2 TRUE FALSE FALSE 10479.32282 9307.275869 10899.22249 12018.66512 9824.079626 8958.999427 10279.97689 8593.133031 10657.02675 11327.42084 0.925128762 0.821658875 0.962198071 1.061023978 0.867283008 0.790912561 0.907530234 0.758613382 0.940816705 1 13.46753179 -1 0.215051965 0.984761704 1.55E-10 0.345720294 0.072855312 40.70570432 0.482455317 0.058817243 13.93826619 0.1 1 -0.984761704 AKDPDAELACS(ph)MQYDDQELEQLSR ddPTM_HeLa_CUDC101_4h_R1 1 AKDPDAELACSMQYDDQELEQLSR 24 1 Q9HCC9-5;Q9HCC9-4;Q9HCC9-3;Q9HCC9-2;Q9HCC9 Q9HCC9-5 ZFYVE28 Lateral signaling target protein 2 homolog 1 0 AKDPDAELACS(0.86)MQY(0.137)DDQELEQLS(0.003)R 44.474 0.038267 7047000 1674.1 1240.8 1634.9 1558.9 1964.5 1685.4 2121 2042.2 1393.9 964.47 TRUE FALSE FALSE 1477.864536 1279.027577 1723.287639 1622.47868 1819.582749 1653.253803 2202.80768 2274.675793 1336.442852 958.7332895 1.541476187 1.334080699 1.797463026 1.692314951 1.897902961 1.724414726 2.297623025 2.372584553 1.393967297 1 9.904985717 -1 0.114668359 0.678271727 5.850263501 0.806523289 0.176013059 22.03635664 0.175558177 0.754873467 18.18429101 0.1 1 5.171991774 up AASGEDSTEEALAAAAAPWEGGPVPGVDRS(ph)PFAK ddPTM_HeLa_CUDC101_4h_R1 2 AASGEDSTEEALAAAAAPWEGGPVPGVDRSPFAK 34 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6 Q641Q2 FAM21A WASH complex subunit FAM21A 1 0 AASGEDSTEEALAAAAAPWEGGPVPGVDRS(1)PFAK;AASGEDSTEEALAAAAAPWEGGPVPGVDRS(1)PFAK ; 117.52 2.94E-16 73694000 2524.73 2057.91 2217.19 2195.82 2718.71 2011.65 2495.13 2195.64 2250.73 2226.85 TRUE FALSE FALSE 2228.784977 2121.311768 2337.057998 2285.375031 2518.15618 1973.281128 2591.368 2445.582783 2157.953957 2213.604597 1.006857765 0.958306542 1.055770304 1.032422427 1.137581745 0.891433425 1.170655321 1.104796577 0.97485972 1 11.11218183 -1 0.358025695 1.000184202 2.622827093 0.237610569 0.071113211 54.70893482 0.680404024 0.017995403 61.16890729 0.1 1 1.622642891 EVDEDS(ph)EPEREVR ddPTM_HeLa_CUDC101_4h_R1 2 EVDEDSEPEREVR 13 1 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 0 EVDEDS(1)EPEREVR;EVDEDS(1)EPEREVR ; 82.837 0.015141 159753000 4186.6 3663.7 3865 4162.7 4484.6 4050.1 4347.2 4767 4026.4 3972.7 TRUE FALSE FALSE 3695.853094 3776.574254 4073.953591 4332.472899 4153.779993 3972.85109 4514.87296 5309.656011 3860.430088 3949.070204 0.935879309 0.956319857 1.031623491 1.097086827 1.051837465 1.006021895 1.14327493 1.344533203 0.977554181 1 11.9472973 -1 0.560085905 0.975800127 18.31846349 0.848306834 0.044286838 37.12125038 0.300726472 0.009352018 780.6270769 0.1 1 17.34266336 QEAGKEGTAPS(ph)ENGETKAEEAQK ddPTM_HeLa_CUDC101_4h_R1 2 QEAGKEGTAPSENGETKAEEAQK 23 2 Q15651 Q15651 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 0 QEAGKEGT(0.001)APS(0.5)ENGET(0.5)KAEEAQK;QEAGKEGT(0.001)APS(0.544)ENGET(0.455)KAEEAQK ; 45.784 0.027204 23632000 4315.4 4689.6 5680.5 5250.9 7157.3 5781.6 6237.1 8910.6 5717.3 5367.7 TRUE FALSE FALSE 3809.555354 4834.081017 5987.605013 5465.054398 6629.320238 5671.325613 6477.667036 9924.946686 5481.630474 5335.772682 0.713965077 0.905975818 1.122162688 1.02422924 1.242429285 1.062887411 1.214007309 1.860076746 1.027335833 1 12.38148149 -1 0.494423626 0.883927999 28.48713035 0.76413311 0.138865442 33.60982775 0.327337898 0.031604432 967.0585913 0.1 1 27.60320235 SRS(ph)TTELDDYSTNKNGNNK ddPTM_HeLa_CUDC101_4h_R1 1 SRSTTELDDYSTNKNGNNK 19 2 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 S(0.217)RS(0.724)T(0.044)T(0.008)ELDDY(0.006)S(0.001)TNKNGNNK 85.61 0.0039407 10848000 698.24 779.82 789.6 881.29 1032.6 702.23 962.17 1438.1 800.83 356.77 TRUE FALSE FALSE 616.3933657 803.8453299 832.2881644 917.2328155 956.4271552 688.8361327 999.2812192 1601.807491 767.8194484 354.6479162 1.738043106 2.266601024 2.346801226 2.586319484 2.696835683 1.942309827 2.817671199 4.516613289 2.16501892 1 8.47024366 -1 0.139269891 0.598973056 11.26665559 0.544580374 0.58288478 27.28607259 0.251462704 1.319826215 58.12085346 0.1 1 10.66768254 TAS(ph)LVTR ddPTM_HeLa_CUDC101_4h_R1 2 TASLVTR 7 0 Q7L7X3;Q7L7X3-3;Q7L7X3-2 Q7L7X3 TAOK1 Serine/threonine-protein kinase TAO1 1 0 T(0.004)AS(0.983)LVT(0.013)R;TAS(0.987)LVT(0.012)R ; 106.68 0.014977 69005000 9467 7907.5 8169 8821.1 8976.8 10458.2 9296.4 12387.6 7104.9 8067.7 TRUE FALSE FALSE 8357.292611 8151.120702 8610.64085 9180.862586 8314.599348 10258.72726 9654.965262 13797.75431 6812.033015 8019.712962 1.042093732 1.016385592 1.073684419 1.144786931 1.036770192 1.279188832 1.203904093 1.72047982 0.849411076 1 12.96933489 -1 0.625652495 1.025842365 50.76858213 0.856552168 0.08505238 32.4430452 0.211828722 0.009979198 2227.616891 0.1 1 49.74273976 AS(ph)PSPQPSSQPLQIHR ddPTM_HeLa_CUDC101_4h_R1 3 ASPSPQPSSQPLQIHR 16 0 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 AS(0.499)PS(0.499)PQPS(0.001)SQPLQIHR;AS(0.498)PS(0.498)PQPS(0.003)SQPLQIHR;AS(0.5)PS(0.5)PQPSSQPLQIHR ;; 150.9 0.00010843 381364000 6669.2 4899.72 5932 5086.6 6298.6 5388.6 5002.8 4614.2 5753.2 6010.4 TRUE FALSE FALSE 5887.446486 5050.674566 6252.701863 5294.053534 5833.964827 5285.821433 5195.759672 5139.461877 5516.050661 5974.649873 0.985404435 0.845350719 1.046538625 0.886085988 0.976453006 0.884708149 0.869634168 0.860211391 0.923242496 1 12.54463846 -1 0.184956919 1.013394524 0.28513875 0.194572014 0.059098835 34.88862934 0.384512164 0.057935358 7.242722388 0.1 1 -0.728255773 KLGPGRPLPTFPTSECT(ph)SDVEPDTR ddPTM_HeLa_CUDC101_4h_R1 1 KLGPGRPLPTFPTSECTSDVEPDTR 25 2 Q8TDD1-2;Q8TDD1;H0YHZ9 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 0 KLGPGRPLPTFPTSECT(0.513)S(0.482)DVEPDT(0.004)R 71.556 0.00042131 60696000 1000.4 1174.7 1139.7 941.39 1187.4 1189.2 1222.1 1510.1 1209.7 559.27 TRUE FALSE FALSE 883.1346285 1210.891115 1201.315629 979.7839532 1099.807868 1166.517991 1269.236806 1682.00368 1159.835654 555.9434372 1.588533238 2.178083297 2.160859449 1.762380645 1.978272957 2.098267402 2.283032268 3.025494263 2.086247586 1 9.118794297 -1 0.081541656 2.63E-13 7.192739331 0.296025531 0.41360719 53.17349499 0.318291947 4.25106058 43.25554383 0.1 1 7.192739331 SDK(ac)PDMAEIEKFDK(ac)SK ddPTM_HeLa_CUDC101_4h_R1 1 SDKPDMAEIEKFDKSK 16 3 P62328 P62328 TMSB4X Thymosin beta-4;Hematopoietic system regulatory peptide 0 2 SDK(1)PDMAEIEKFDK(1)SK 124.25 0.0050807 5492200 2858.1 3453.1 3921.7 3392.6 4758.6 3852.6 4074.5 5259.3 2659.9 2150.5 FALSE TRUE FALSE 2523.077851 3559.485918 4133.718964 3530.964892 4407.567558 3779.118074 4231.65483 5857.997453 2550.257796 2137.70873 1.180272043 1.665093971 1.933714779 1.651752104 2.06181857 1.767835824 1.979528254 2.740316008 1.192986565 1 11.06184958 -1 0.143522086 0.688947852 7.146782745 0.779216966 0.228663505 20.87567909 0.196481665 0.572857604 27.91327183 0.1 1 6.457834893 KLS(ph)SSDAPAQDTGSSAAAVETDASR ddPTM_HeLa_CUDC101_4h_R1 1 KLSSSDAPAQDTGSSAAAVETDASR 25 1 H0YHT2;A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-3;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;H0YIM6 H0YHT2 KIF21A Kinesin-like protein KIF21A 1 0 KLS(0.728)S(0.211)S(0.061)DAPAQDTGSSAAAVETDASR 187.04 1.96E-17 161250000 2546.6 2592.2 2371.7 2508.5 2815.5 2528.9 2613.5 2994.7 2266.7 2489 TRUE FALSE FALSE 2248.091408 2672.062609 2499.921276 2610.807473 2607.806174 2480.665446 2714.30357 3335.604543 2173.265667 2474.195317 0.908615174 1.079972382 1.010397707 1.055214782 1.054001742 1.002615044 1.097044987 1.348157326 0.878372718 1 11.27274368 -1 0.663982324 0.974700616 36.16160073 0.756338919 0.05992588 78.25208278 0.444751852 0.010301989 4067.432593 0.1 1 35.18690012 ESYDAPPT(ph)PSGAR ddPTM_HeLa_CUDC101_4h_R1 1 ESYDAPPTPSGAR 13 0 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 0 ESYDAPPT(0.988)PS(0.012)GAR 228.17 1.73E-32 32041000 2687.9 2541.7 2446.8 2359.7 2869.7 3184.7 3291.9 4904.8 1699.2 2140.4 TRUE FALSE FALSE 2372.828437 2620.006764 2579.081409 2455.938765 2658.007948 3123.957154 3418.869686 5463.142606 1629.158257 2127.668806 1.115224527 1.231397837 1.212163003 1.154286212 1.249258316 1.468253492 1.606861781 2.567665885 0.765701059 1 11.05505788 -1 0.617447627 1.076327061 105.0640172 0.925877659 0.12657759 21.56313851 0.144851098 0.015430814 3048.407832 0.1 1 103.9876901 up SFS(ph)KEVEERS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SFSKEVEERSR 11 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 2 0 SFS(1)KEVEERS(1)R 111.81 0.018431 24617000 6203 6150.8 6287.6 6859.9 9640.2 10077 12328 17146 6373.9 6227.8 TRUE FALSE FALSE 5475.893743 6340.298858 6627.526675 7139.676373 8929.061652 9884.798014 12803.49509 19097.83133 6111.165144 6190.756769 0.88452736 1.024155704 1.070551941 1.153280066 1.44232151 1.596702695 2.068163161 3.084894472 0.987143474 1 12.59590006 -1 0.490037502 0.938412305 66.16915286 0.991669702 0.05931109 5.990850433 0.058992089 0.01409168 402.8876056 0.1 1 65.23074056 up MVIQGPS(ph)SPQGEAMVTDVLEDQKEGR ddPTM_HeLa_CUDC101_4h_R1 11 MVIQGPSSPQGEAMVTDVLEDQKEGR 26 1 Q12888;Q12888-3;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 MVIQGPS(0.603)S(0.397)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.5)S(0.5)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.544)S(0.452)PQGEAMVT(0.004)DVLEDQKEGR;MVIQGPS(0.5)S(0.5)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.5)S(0.5)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.827)S(0.173)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.5)S(0.5)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.5)S(0.5)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.5)S(0.5)PQGEAMVT(0.001)DVLEDQKEGR;MVIQGPS(0.5)S(0.5)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.499)S(0.499)PQGEAMVT(0.001)DVLEDQKEGR ;;;;;;;;;; 123.84 1.26E-09 534109500 20463.04 18045.53 18829.15 17997.88 22349.4 18667.9 19161.63 19934.2 20490.02 17827.67 TRUE FALSE FALSE 18064.39347 18601.49139 19847.1108 18731.91134 20700.72929 18311.84091 19900.70049 22203.42875 19645.4127 17721.63023 1.019341519 1.049648997 1.11993708 1.057008362 1.168105249 1.033304537 1.12296105 1.252899901 1.108555616 1 14.1132237 -1 0.208096393 0.988928336 2.054866802 0.368021904 0.05835676 22.67546249 0.264958261 0.039237153 8.044987238 0.1 1 1.065938467 DSSSSLTDPQVS(ph)YVKSPAAERR ddPTM_HeLa_CUDC101_4h_R1 1 DSSSSLTDPQVSYVKSPAAERR 22 2 H7C3M7;O94887-3;O94887-2;O94887 H7C3M7;O94887-3 FARP2 "FERM, RhoGEF and pleckstrin domain-containing protein 2" 1 0 DSSSSLT(0.002)DPQVS(0.453)Y(0.37)VKS(0.175)PAAERR 55.907 0.0080902 29586000 3203.2 3431.9 3193.7 3566 4028.2 3510.2 3692.6 4330 3334.7 2579.8 TRUE FALSE FALSE 2827.725752 3537.632771 3366.361082 3711.436894 3731.047711 3443.248783 3835.024819 4822.909698 3197.242255 2564.455235 1.102661381 1.379487044 1.312700271 1.44726133 1.454908497 1.342682351 1.495453992 1.880676111 1.246752999 1 11.32443667 -1 0.151238167 0.875598026 4.081159222 0.660905378 0.132437012 19.18891193 0.187153251 0.232453091 13.57928832 0.1 1 3.205561196 GNS(ph)PPSSGEACREEK ddPTM_HeLa_CUDC101_4h_R1 3 GNSPPSSGEACREEK 15 1 P41227;P41227-2 P41227 NAA10 N-alpha-acetyltransferase 10 1 0 GNS(0.796)PPS(0.084)S(0.12)GEACREEK;GNS(0.417)PPS(0.292)S(0.292)GEACREEK;GNS(0.895)PPS(0.053)S(0.053)GEACREEK ;; 80.541 0.010925 536770000 9566 9855.3 10534.7 10316.5 11928.8 10571.4 10283.4 12356.6 11457.4 10782 TRUE FALSE FALSE 8444.687981 10158.93011 11104.23775 10737.25146 11048.83619 10369.76816 10680.03418 13763.2254 10985.12112 10717.86818 0.78790743 0.947849884 1.036049106 1.001808501 1.030880022 0.967521524 0.996470007 1.284138334 1.02493527 1 13.38773036 -1 0.56112764 0.916204424 16.69131179 0.486836432 0.08223467 80.47642275 0.649913344 0.018197502 1542.787532 0.1 1 15.77510737 ALVVPEPEPDS(ph)DS(ph)NQER ddPTM_HeLa_CUDC101_4h_R1 1 ALVVPEPEPDSDSNQER 17 0 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 2 0 ALVVPEPEPDS(1)DS(1)NQER 112.57 0.0081288 4113200 1496.7 1208.6 1419.7 1297.5 1920.5 1733.1 1821.7 2256.2 1289.9 1343.7 TRUE FALSE FALSE 1321.259095 1245.835533 1496.453276 1350.417658 1778.828541 1700.044005 1891.963579 2513.036688 1236.729776 1335.707613 0.989182874 0.932715754 1.120344948 1.011012923 1.331749946 1.272766576 1.416450398 1.881427241 0.925898576 1 10.38338852 -1 0.445481593 0.985172491 20.52692472 0.925674241 0.077376336 12.05763906 0.131334568 0.015152296 215.5739121 0.1 1 19.54175223 EVQDKDYPLT(ph)PPPS(ph)PTVDEPK ddPTM_HeLa_CUDC101_4h_R1 2 EVQDKDYPLTPPPSPTVDEPK 21 1 Q5THJ4-2;Q5THJ4;H3BLS7 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 2 0 EVQDKDYPLT(1)PPPS(0.594)PT(0.406)VDEPK;EVQDKDYPLT(1)PPPS(0.963)PT(0.037)VDEPK ; 138.23 7.13E-07 60641000 11825.8 10487.6 10616.3 10437.6 12316.2 12067 10967.5 11927.2 11170.5 11581.5 TRUE FALSE FALSE 10439.59765 10810.71053 11190.24929 10863.29044 11407.65846 11836.84208 11390.52015 13284.94424 10710.04726 11512.61272 0.906796563 0.939031894 0.971999107 0.943599051 0.990883541 1.028162969 0.989394886 1.153946941 0.930288156 1 13.49092766 -1 0.710971433 0.955236404 26.52455579 0.77568629 0.0313407 126.5450049 0.600499657 0.006521449 5159.805792 0.1 1 25.56931938 VDVADQAQDKDRDDR ddPTM_HeLa_CUDC101_4h_R1 2 VDVADQAQDKDRDDR 15 2 E7EX17;P23588-2;P23588;F8VP89;F8W0K0;F8VSC7 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ; ; 72.815 0.016199 33232000 8593.1 7367.9 7330.2 6952.9 6395.4 6622.6 6323.3 6933.4 7708.6 7910.7 FALSE FALSE TRUE 7585.829844 7594.896266 7726.492785 7236.469315 5923.624083 6496.284939 6567.191799 7722.67023 7390.848245 7863.646805 0.964670722 0.965823676 0.982558471 0.920243431 0.753292236 0.826116063 0.835133108 0.982072367 0.939875408 1 12.94098281 -5.990549466 7.105586758 0.980081639 0.845033823 0.516940436 0.054890987 0.0741617 20.52812353 0.007821682 0.013935918 1.02E-06 5.990549466 -0.135047816 VDVDIPDVNIEGPDAK ddPTM_HeLa_CUDC101_4h_R1 1 VDVDIPDVNIEGPDAK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 151.54 0.00088335 16432000 850.41 753.92 462.53 730.42 814.51 705.55 653.95 687.23 814.53 858.27 FALSE FALSE TRUE 750.7262289 777.1473816 487.5357709 760.2096847 754.42522 692.0928093 679.1730706 765.4614853 780.9547286 853.1649719 0.879930909 0.910899307 0.571443727 0.891046527 0.884266519 0.811206311 0.796063004 0.897202195 0.915361922 1 9.736680924 -8.217456124 0.760486891 0.986200547 0.819565554 0.223066494 0.095806248 0.478480629 0.598499549 0.035607078 0.021812105 6.06E-09 8.217456124 -0.166634993 VDVDVPDVNIEGPDAK ddPTM_HeLa_CUDC101_4h_R1 4 VDVDVPDVNIEGPDAK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ;;; ;;; 265.12 1.50E-69 158101000 22092 20810.4 18900.8 17864.7 20555.1 19873.9 18712.2 20436.2 21031.3 20662.4 FALSE FALSE TRUE 19502.40925 21451.54376 19922.63442 18593.29968 19038.79122 19494.83847 19433.93582 22762.5744 20164.38091 20539.49913 0.949507538 1.044404424 0.969966906 0.905246013 0.926935516 0.949138942 0.946173794 1.108234152 0.98173674 1 14.32611338 -9.601757011 1.352482477 1.000261574 0.968323001 0 0.057057491 1.391169633 4.504205939 0.041034613 0.009144348 2.50E-10 9.601757011 -0.031938572 VDVECPDVNIEGPEGK ddPTM_HeLa_CUDC101_4h_R1 2 VDVECPDVNIEGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 178.23 9.94E-07 25119000 10774 9415.9 7841.8 8390.1 9638.5 9430.6 9456.2 9708.7 9342.5 9212 FALSE FALSE TRUE 9511.088052 9705.992718 8265.751428 8732.284543 8927.487058 9250.727017 9820.928802 10813.89916 8957.398196 9157.206614 1.03864513 1.059929422 0.902649877 0.953596977 0.974913796 1.010212765 1.072480857 1.180916804 0.9781802 1 13.16069186 -4.371283779 2.107111553 1.005043207 1.207004687 0.641128869 0.043598641 0.297979545 1.730933123 0.006718888 0.103809741 4.25E-05 4.371283779 0.201961479 VDVEGPDVNIEGPEGK ddPTM_HeLa_CUDC101_4h_R1 1 VDVEGPDVNIEGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 99.844 0.024569 4756900 1837.1 1438 1298.5 1461.5 1401.7 1321.4 1153.5 1340.5 1537.7 1528.2 FALSE FALSE TRUE 1621.757923 1482.303076 1368.700838 1521.106287 1298.299384 1296.196497 1197.990881 1493.097102 1474.315355 1519.110198 1.067570953 0.975770604 0.900988512 1.001313985 0.854644637 0.853260348 0.788613547 0.982876096 0.970512446 1 10.56901081 -6.395285662 1.001652416 1.030941879 0.866378734 0.40477713 0.063117439 0.274268504 0.547185187 0.01110873 0.021627801 4.02E-07 6.395285662 -0.164563146 LGGSVLGQIPFLQNCEDEDS(ph)DEDDELDSVQHKK ddPTM_HeLa_CUDC101_4h_R1 1 LGGSVLGQIPFLQNCEDEDSDEDDELDSVQHKK 33 1 R4GN16;F5GYK2;Q9NRL3-2;Q9NRL3;Q9NRL3-3 R4GN16 STRN4 Striatin-4 1 0 LGGSVLGQIPFLQNCEDEDS(1)DEDDELDSVQHKK 75.939 4.56E-06 29596000 2520.3 2352.2 1649 1958.2 2885 2626.9 2390.5 2768.9 2867.4 1599.8 TRUE FALSE FALSE 2224.874255 2424.668494 1738.149928 2038.06386 2672.179298 2576.796259 2482.702386 3084.100384 2749.204558 1590.284318 1.399041812 1.524676101 1.092980612 1.281572003 1.680315442 1.620336835 1.561168878 1.93933899 1.728750341 1 10.635069 -1 0.092162851 0.702683922 3.736215047 0.085651666 0.26487459 64.48878115 0.429305824 1.840626772 24.84302136 0.1 1 3.033531125 VDVEVPDVSLEGPEGK ddPTM_HeLa_CUDC101_4h_R1 3 VDVEVPDVSLEGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ;; ;; 231.06 2.37E-42 79797000 11979 10495.3 9096.6 9692.7 11148.7 10566.6 10210.1 10544.4 11261.4 10623.5 FALSE FALSE TRUE 10574.83978 10818.64775 9588.389712 10088.0102 10326.28261 10365.05971 10603.90698 11744.73187 10797.20033 10560.31095 1.001375796 1.024462992 0.907964714 0.955275867 0.977838878 0.981510844 1.00412829 1.11215777 1.022432046 1 13.3663647 -4.263517656 3.644678702 0.989879973 1.12550856 0.575068404 0.032584993 0.158621384 3.835011636 0.00456972 0.058080773 5.45E-05 4.263517656 0.135628587 VDVGKDQEFTVK ddPTM_HeLa_CUDC101_4h_R1 2 VDVGKDQEFTVK 12 1 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 ; ; 89.43 0.02767 60613000 4186 4453.1 4940.4 4327.9 4587.8 4593.9 4663.4 5472.8 5232.1 5203.1 FALSE FALSE TRUE 3695.323426 4590.294733 5207.492968 4504.410469 4249.367134 4506.279011 4843.2689 6095.80143 5016.430623 5172.15173 0.714465394 0.887501947 1.006832986 0.870896815 0.821585939 0.871258085 0.936412765 1.178581323 0.969892394 1 12.33654888 -4.255814846 2.486870638 0.871907015 1.249320929 0.490467596 0.084762662 0.420866275 3.162882488 0.015659294 0.337526196 5.55E-05 4.255814846 0.377413915 VDVGKDQEFTVK(ac)SK ddPTM_HeLa_CUDC101_4h_R1 1 VDVGKDQEFTVKSK 14 2 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 1 VDVGKDQEFTVK(1)SK 98 0.025319 1869300 168.12 220.11 205.87 173.46 112.14 272.64 200.75 215.36 234.67 74.641 FALSE TRUE FALSE 148.4132285 226.8913282 216.9999549 180.5344486 103.8676556 267.4398462 208.4929947 239.8757119 224.9968033 74.19703201 2.000258291 3.05795693 2.92464468 2.433176148 1.399889629 3.604454774 2.809991035 3.232955623 3.032423227 1 6.213289573 -8.504994337 0.266107755 0.358667408 3.137271379 0 0.862074668 1.580800389 0.244950581 1.573252861 0.581882443 3.13E-09 8.504994337 2.778603971 VDVIAGSSK(ac)MK ddPTM_HeLa_CUDC101_4h_R1 2 VDVIAGSSKMK 11 1 O60885;O60885-2;O60885-3 O60885 BRD4 Bromodomain-containing protein 4 0 1 ; VDVIAGSSK(1)MK;VDVIAGSSK(1)MK 112.15 0.0076129 1440220 254.7 168.22 320.66 557.75 789.94 809.72 671.6 696.63 285.7 176.51 FALSE TRUE FALSE 224.8444521 173.4026588 337.9958495 580.4974558 731.6677 794.2759401 697.503837 775.9315433 273.9233251 175.4601107 1.281456231 0.988273962 1.926340114 3.308429783 4.16999452 4.526817731 3.975284378 4.422267491 1.561171505 1 7.454999273 -6.217950202 1.72426191 1.11885198 4.297637511 0.975434792 0.222682568 0.028382532 0.164757034 0.029066044 0.053247969 6.05E-07 6.217950202 3.178785531 MPEANQLHLPNLNSQVDSPSSEKS(ph)PVMTPFK ddPTM_HeLa_CUDC101_4h_R1 1 MPEANQLHLPNLNSQVDSPSSEKSPVMTPFK 31 1 Q9UPQ0-8;Q9UPQ0-10;Q9UPQ0-3;H0Y8P3;G5EA03;Q9UPQ0-6;E7EPK0;E9PDJ9;Q9UPQ0-9 Q9UPQ0-8 LIMCH1 LIM and calponin homology domains-containing protein 1 1 0 MPEANQLHLPNLNS(0.021)QVDS(0.021)PS(0.286)S(0.286)EKS(0.385)PVMT(0.001)PFK 99.614 1.12E-09 26525000 1003.6 1066.7 757.66 751.27 1276.7 1119 1119.9 1225.1 898.24 817.14 TRUE FALSE FALSE 885.9595294 1099.563763 798.6213914 781.9100379 1182.520385 1097.656939 1163.094918 1364.560432 861.214167 812.2796149 1.090707575 1.353676422 0.983185318 0.962611918 1.455804581 1.351328926 1.431889828 1.679914659 1.060243482 1 9.665832629 -1 0.30012471 1.019892203 6.721975402 0.672772189 0.135034894 19.92665075 0.254919128 0.050305429 61.86061623 0.1 1 5.7020832 VDVSAPDVEAHGPEWNLK ddPTM_HeLa_CUDC101_4h_R1 1 VDVSAPDVEAHGPEWNLK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 135.57 6.82E-05 3803800 1099.1 1182.6 1201 1287.5 1151 1326.3 965.55 1289.4 1239.8 1106.1 FALSE FALSE TRUE 970.2651641 1219.034504 1265.929693 1340.009815 1066.093023 1301.003037 1002.791587 1436.180084 1188.694919 1099.520868 0.88244361 1.108696105 1.151346673 1.218721585 0.969597808 1.183245425 0.912025971 1.3061872 1.081102646 1 10.10265927 -7.244448594 21.6608224 0.944487272 1.114784681 0.182355497 0.11886282 113.9173788 145227.7129 0.017416712 0.021282544 5.70E-08 7.244448594 0.170297409 VEAK(ac)FINYVK ddPTM_HeLa_CUDC101_4h_R1 2 VEAKFINYVK 10 1 P06748;P06748-2 P06748 NPM1 Nucleophosmin 0 1 ; VEAK(1)FINYVK;VEAK(1)FINYVK 188.87 2.89E-05 19910400 2972.85 2223.85 2078.76 2412.28 2502.93 2470.72 2474.66 2754.51 2352.38 1991.88 FALSE TRUE FALSE 2624.37703 2292.364183 2191.144054 2510.663205 2318.29384 2423.595133 2570.108465 3068.072284 2255.413901 1980.032209 1.325421383 1.157740855 1.106620409 1.267991093 1.170836429 1.224018034 1.298013463 1.54950625 1.1390794 1 10.95130818 -12.52349919 0.270409844 3.06E-27 1.28974879 0.289492404 0.119811531 20.8635311 0.454231253 11.26343754 0.062334056 3.00E-13 12.52349919 1.28974879 LATNTS(ph)APDLK ddPTM_HeLa_CUDC101_4h_R1 2 LATNTSAPDLK 11 0 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;P27816-4;H0Y2V1;H7C4C5;B5MEG9;F8W9U4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 LATNT(0.008)S(0.992)APDLK;LAT(0.001)NT(0.167)S(0.831)APDLK ; 187.74 6.88E-11 314270000 14838.5 14537.2 15199.8 13382.8 19246.5 19613.8 19079.7 26864 14677.7 14056.6 TRUE FALSE FALSE 13099.15352 14985.0739 16021.54716 13928.60843 17826.72404 19239.69944 19815.61042 29922.08917 14072.67899 13972.99072 0.937462408 1.072431393 1.146608302 0.996823709 1.275798746 1.376920649 1.418136662 2.141423391 1.007134355 1 13.77035322 -1 0.494864079 0.977801341 35.35075474 0.935938782 0.086335369 14.24638577 0.138595752 0.016586665 511.0057763 0.1 1 34.3729534 up AAEKGY(ph)S(ph)VGGLLQEVMK ddPTM_HeLa_CUDC101_4h_R1 1 AAEKGYSVGGLLQEVMK 17 1 Q5JQC9-2;Q5JQC9 Q5JQC9-2 AKAP4 A-kinase anchor protein 4 2 0 AAEKGY(1)S(1)VGGLLQEVMK 62.69 0.030409 40336000 1438.1 1326.2 1338.2 1278.7 1743.6 1378.8 1484.8 1784.9 1328.6 1060.9 TRUE FALSE FALSE 1269.528098 1367.05865 1410.54714 1330.850913 1614.978102 1352.501687 1542.069233 1988.085801 1273.834546 1054.58972 1.203812321 1.296294307 1.337531661 1.261960825 1.531380471 1.28249087 1.462245653 1.885174646 1.20789585 1 10.04246612 -1 0.157635644 0.944615349 3.819444415 0.683813699 0.127138642 21.22857589 0.212744705 0.209356192 14.18452195 0.1 1 2.874829066 TKEYVSNDAAQS(ph)DDEEKLQSQPTDTDGGR ddPTM_HeLa_CUDC101_4h_R1 4 TKEYVSNDAAQSDDEEKLQSQPTDTDGGR 29 2 Q5JSH3-2;Q5JSH3;Q5JSH3-4;H7BY83 Q5JSH3-2 WDR44 WD repeat-containing protein 44 1 0 TKEYVSNDAAQS(0.999)DDEEKLQS(0.001)QPTDTDGGR;T(0.001)KEY(0.001)VS(0.001)NDAAQS(0.947)DDEEKLQS(0.035)QPT(0.012)DT(0.004)DGGR;TKEYVSNDAAQS(0.993)DDEEKLQS(0.006)QPTDTDGGR;TKEYVSNDAAQS(0.993)DDEEKLQS(0.005)QPT(0.001)DTDGGR ;;; 83.216 4.45E-07 737360000 5939.82 5981.25 5637.3 5413.3 6375.62 5592.61 5669.82 6357.68 5644.35 5467.11 TRUE FALSE FALSE 5243.563304 6165.525223 5942.06949 5634.077772 5905.303215 5485.940282 5888.506857 7081.412593 5411.687504 5434.591387 0.964849596 1.134496558 1.093379257 1.036706786 1.086614024 1.009448529 1.083523385 1.303025764 0.995785537 1 12.40795585 -1 0.818294767 1.00875385 82.33084494 0.630170379 0.056297612 258.9325602 0.782862367 0.010219729 39124.25767 0.1 1 81.32209109 QDSNRS(ph)EKEAT(ph)PVVHETEPESGSQPR ddPTM_HeLa_CUDC101_4h_R1 2 QDSNRSEKEATPVVHETEPESGSQPR 26 2 E7EPN9;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-2;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 2 0 QDS(0.215)NRS(0.81)EKEAT(0.975)PVVHETEPESGSQPR;QDS(0.338)NRS(0.853)EKEAT(0.809)PVVHETEPESGSQPR ; 76.471 0.00028401 17386000 2415.27 1959.6 2113.85 2405.73 3299.41 3557.89 4461.6 6881.2 2587.64 2136.59 TRUE FALSE FALSE 2132.155712 2019.972953 2228.131125 2503.846068 3056.019098 3490.029176 4633.685407 7664.527993 2480.976384 2123.881468 1.003895813 0.951076124 1.049084499 1.178901038 1.438884017 1.643231616 2.181706219 3.608736227 1.168133166 1 11.05248754 -1 0.584788283 0.991349799 151.9387131 0.989381842 0.080774898 6.815287133 0.051077421 0.010838398 1312.757478 0.1 1 150.9473633 up HEDEQALLDQNS(ph)QTPPPSPFSVQAFNK ddPTM_HeLa_CUDC101_4h_R1 1 HEDEQALLDQNSQTPPPSPFSVQAFNK 27 0 A0A499FJI4;O75592-2;O75592;A0A087WY34 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 0 HEDEQALLDQNS(0.828)QT(0.172)PPPSPFSVQAFNK 89.297 4.46E-06 24432000 1171.1 919.13 1174.2 973.38 1148.3 991.6 1220.6 969.14 707.85 1000.2 TRUE FALSE FALSE 1033.825433 947.4473059 1237.680804 1013.078644 1063.592197 972.6868821 1267.678951 1079.46298 678.6721234 994.2507659 1.039803507 0.9529259 1.244837667 1.01893675 1.069742396 0.978311423 1.275009278 1.085704952 0.682596531 1 9.957465958 -1 0.159465581 0.985374132 1.628347665 0.199555041 0.138907741 74.79890277 0.755166793 0.160491304 11.34093606 0.1 1 0.642973533 VEEAEPEEFVVEK ddPTM_HeLa_CUDC101_4h_R1 2 VEEAEPEEFVVEK 13 0 Q13185;S4R2Y4;C9JMM0;B8ZZ43 Q13185 CBX3 Chromobox protein homolog 3 0 0 ; ; 234.3 1.68E-42 32291000 5575.1 5270.7 4683.3 4279.8 5068.8 4428.6 4285.8 4669.7 4718.7 5162.2 FALSE FALSE TRUE 4921.595229 5433.08402 4936.493364 4454.348743 4694.884722 4344.131834 4451.104742 5201.279772 4524.193189 5131.495005 0.959095785 1.058772154 0.961999059 0.868041134 0.914915579 0.846562616 0.867408959 1.013599305 0.881652069 1 12.32516349 -6.42465897 5.517544766 0.987039372 0.898352544 0.249009991 0.059477804 0.164435816 7.478190547 0.00743443 0.011386528 3.76E-07 6.42465897 -0.088686828 VEEAPVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VEEAPVKK 8 1 Q8NFC6;H0Y9Y2 Q8NFC6;H0Y9Y2 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 0 1 ; VEEAPVK(1)K;VEEAPVK(1)K 125.31 0.0020971 36296000 8611.9 10608.8 11087.5 11867.9 11909.9 11549.5 11710.7 13136 9432.5 9931.3 FALSE TRUE FALSE 7602.426137 10935.64455 11686.92379 12351.92426 11031.3304 11329.21253 12162.38562 14631.34914 9043.688358 9872.228186 0.770082092 1.107717969 1.183818239 1.251178967 1.117410396 1.147584144 1.231979791 1.482071612 0.916073675 1 13.26916003 -7.03443256 3.69639813 0.891780302 1.224415332 0.666321068 0.107177983 0.116266417 3.346371262 0.02095629 0.02665221 9.24E-08 7.03443256 0.33263503 QAVEMKNDKS(ph)EEEQSSSSVK ddPTM_HeLa_CUDC101_4h_R1 2 QAVEMKNDKSEEEQSSSSVK 20 2 P07910-2;P07910;P07910-3;B2R5W2;G3V2D6;P07910-4;B4DY08;G3V4W0;G3V5V7 P07910-2 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 0 QAVEMKNDKS(0.942)EEEQS(0.038)S(0.014)S(0.005)S(0.002)VK;QAVEMKNDKS(0.986)EEEQS(0.007)S(0.003)S(0.002)S(0.001)VK ; 54.656 0.016067 43418000 5173.2 6957.4 6440.3 7771.2 10548.2 8156.9 9526.5 13546 7719.9 2261.41 TRUE FALSE FALSE 4566.805338 7171.749247 6788.482099 8088.143126 9770.080301 8001.320723 9893.940296 15088.02189 7401.682454 2247.959033 2.031534059 3.190338055 3.019842444 3.597994006 4.346200335 3.559371237 4.401299202 6.711875824 3.292623374 1 11.13440003 -1 0.150054199 0.285763206 21.09652358 0.616488777 0.889511478 14.37788288 0.139495681 1.151233949 65.41785398 0.1 1 20.81076038 STS(ph)LSALVR ddPTM_HeLa_CUDC101_4h_R1 2 STSLSALVR 9 0 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7;X6RAE7;X6R5W5;A0A0A0MRX3 Q5VZ89-5 DENND4C DENN domain-containing protein 4C 1 0 S(0.059)T(0.203)S(0.702)LS(0.036)ALVR;S(0.026)T(0.089)S(0.872)LS(0.012)ALVR ; 99.788 0.017941 38957000 7648.8 6083.4 6605.7 6543 8309.2 7847.5 8095.4 8785.2 6032.2 6350.3 TRUE FALSE FALSE 6752.219259 6270.822343 6962.824123 6809.851821 7696.24687 7697.822012 8407.64229 9785.271657 5783.550163 6312.528133 1.069653729 0.993393172 1.103016727 1.078783599 1.219201991 1.219451518 1.331897793 1.550135136 0.916201883 1 12.6240022 -1 0.382414645 1.019951245 8.800189484 0.928235111 0.047786295 7.856947081 0.09509747 0.008970969 45.93533026 0.1 1 7.780238239 TCNS(ph)PQNSTDSVSDIVPDSPFPGALGSDTR ddPTM_HeLa_CUDC101_4h_R1 3 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 0 T(0.091)CNS(0.882)PQNS(0.025)T(0.002)DSVSDIVPDSPFPGALGSDTR;T(0.097)CNS(0.903)PQNSTDSVSDIVPDSPFPGALGSDTR;T(0.315)CNS(0.661)PQNS(0.023)T(0.001)DSVSDIVPDSPFPGALGSDTR ;; 174.68 4.43E-19 84327000 5044.35 4142.42 3582.13 3921.35 4966.18 5243.75 4553.06 4559.46 4675.02 3797.37 TRUE FALSE FALSE 4453.05894 4270.04305 3775.790783 4081.279603 4599.834795 5143.734205 4728.673049 5078.490496 4482.313697 3774.783074 1.179686051 1.131202235 1.000266958 1.081195799 1.218569307 1.362656901 1.252700607 1.345372806 1.187436101 1 11.88217802 -1 0.191292712 1.025826309 2.538176177 0.495935558 0.085262093 30.07902445 0.337465806 0.094459642 13.55007876 0.1 1 1.512349869 VGS(ph)LDNVGHLPAGGAVK ddPTM_HeLa_CUDC101_4h_R1 5 VGSLDNVGHLPAGGAVK 17 0 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;P27816-4;H0Y2V1;H7C4C5;F8W9U4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK ;;;; 145.8 0.00015942 1860630000 44014.4 42370.5 45251.8 42964.8 45050.5 46401.2 46544.8 53032.7 41727.4 42549.7 TRUE FALSE FALSE 38855.09875 43675.88488 47698.24919 44717.09025 41727.21437 45516.17442 48340.04853 59069.7282 40007.37891 42296.61249 0.918633821 1.032609524 1.127708494 1.057226279 0.986537973 1.076118671 1.142882271 1.396559316 0.945876668 1 15.3682545 -1 0.561557693 0.977106855 20.64844625 0.804426783 0.057156555 43.14796908 0.348003299 0.012099864 1032.416301 0.1 1 19.67133939 GAAEEAELEDS(ph)DDEEKPVKQDDFPK ddPTM_HeLa_CUDC101_4h_R1 3 GAAEEAELEDSDDEEKPVKQDDFPK 25 2 Q9UBB9;F6XM96 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 GAAEEAELEDS(1)DDEEKPVKQDDFPK;GAAEEAELEDS(1)DDEEKPVKQDDFPK;GAAEEAELEDS(1)DDEEKPVKQDDFPK ;; 70.407 0.00021975 290119000 9611.1 8489.1 8408.7 8151.9 8758.7 8022.1 7628.8 6735.1 9015.4 9258.6 TRUE FALSE FALSE 8484.501427 8750.639109 8863.299757 8484.369718 8112.588151 7869.091808 7923.045371 7501.79656 8643.781396 9203.529435 0.921874753 0.950791669 0.963032695 0.921860442 0.8814649 0.855008056 0.860870324 0.815099969 0.939181154 1 13.16797151 -1 0.161217984 1.004330799 0.278597832 0.807433092 0.023614839 18.20391002 0.185064282 0.042937949 3.158397619 0.1 1 -0.725732967 NDSLS(ph)SLDFDDDDVDLSR ddPTM_HeLa_CUDC101_4h_R1 1 NDSLSSLDFDDDDVDLSR 18 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 0 NDS(0.272)LS(0.648)S(0.08)LDFDDDDVDLSR 132.52 6.69E-05 3479400 1040.4 1004.5 826.44 914.14 1001.8 1075 1159 1075.4 1115.8 835.59 TRUE FALSE FALSE 918.4458891 1035.447454 871.1198462 951.4225805 927.8992099 1054.496166 1203.703018 1197.819189 1069.806252 830.6198735 1.10573551 1.246596051 1.048758733 1.145436813 1.117116553 1.269529179 1.449162314 1.442078654 1.2879613 1 9.69804458 -1 0.2801154 1.028064707 4.618233156 0.484832201 0.105431459 14.77464781 0.188292387 0.030944479 26.31517474 0.1 1 3.590168449 SS(ph)LSGDEEDELFK ddPTM_HeLa_CUDC101_4h_R1 3 SSLSGDEEDELFK 13 0 Q5T1M5;Q5T1M5-2 Q5T1M5 FKBP15 FK506-binding protein 15 1 0 S(0.211)S(0.746)LS(0.043)GDEEDELFK;S(0.229)S(0.771)LSGDEEDELFK;S(0.005)S(0.97)LS(0.025)GDEEDELFK ;; 300.07 1.45E-122 50276700 8184.7 8386.7 8266.3 8579.14 10024.9 10284.1 9244.6 11310.1 9785.3 9096.4 TRUE FALSE FALSE 7225.301873 8645.084286 8713.201182 8929.034411 9285.383099 10087.94793 9601.167319 12597.59607 9381.945792 9042.294208 0.799056269 0.956071998 0.963605141 0.98747444 1.026883541 1.115640311 1.061806561 1.39318582 1.037562545 1 13.14247314 -1 0.477924291 0.910669777 13.39235623 0.725744378 0.075175818 33.29934486 0.337665292 0.017538824 415.3900414 0.1 1 12.48168645 KLGAGEGGEASVS(ph)PEKTSTTSK ddPTM_HeLa_CUDC101_4h_R1 1 KLGAGEGGEASVSPEKTSTTSK 22 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KLGAGEGGEAS(0.048)VS(0.952)PEKTSTTSK 86.527 0.00054103 115730000 2412.7 2812.7 2828.6 2969.4 3461.6 2820.7 3038 3964 3112.1 2909.4 TRUE FALSE FALSE 2129.886963 2899.355953 2981.522672 3090.504967 3206.244664 2766.899847 3155.176678 4415.245737 2983.817921 2892.094759 0.736451306 1.002510704 1.030921502 1.068604325 1.108623656 0.956711338 1.090965871 1.526660122 1.03171513 1 11.49789911 -1 0.53099048 0.900705994 23.18549579 0.617586299 0.1148374 54.72453719 0.483168739 0.025855392 1387.038531 0.1 1 22.2847898 VEERDPPR ddPTM_HeLa_CUDC101_4h_R1 1 VEERDPPR 8 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 0 96.19 0.027781 3208500 1588.4 493.91 1509.4 1841.9 994.07 1086.2 1064.2 610.26 1301.9 1595 FALSE FALSE TRUE 1402.21016 509.1267817 1591.00273 1917.020643 920.7394366 1065.482545 1105.24655 679.7295316 1248.235131 1585.512869 0.884389012 0.321111731 1.003462514 1.209085515 0.580720254 0.672011288 0.697090873 0.428712718 0.787275307 1 10.63073387 -3.46901694 0.211889517 1.000629626 3.35E-23 0.144523581 0.241359255 20.51473722 0.599737826 0.236708322 5.705827034 0.000339612 3.46901694 -1.000629626 SLIPDIKPLAGQEAVVDLHADDSRISEDET(ph)ERNGDDGTHDK ddPTM_HeLa_CUDC101_4h_R1 1 SLIPDIKPLAGQEAVVDLHADDSRISEDETERNGDDGTHDK 41 3 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 SLIPDIKPLAGQEAVVDLHADDS(0.051)RIS(0.051)EDET(0.657)ERNGDDGT(0.242)HDK 44.167 0.0048818 504450000 2785.7 2996.4 2434.4 2731.7 3242.9 2944.8 2874.3 3228.6 3315.9 2929.1 TRUE FALSE FALSE 2459.164469 3088.715532 2566.011028 2843.110533 3003.677728 2888.632846 2985.162714 3596.130774 3179.217199 2911.677583 0.844586806 1.060802731 0.881282681 0.976451016 1.031596955 0.992085409 1.025238073 1.235071766 1.091885042 1 11.5076349 -1 0.617432938 0.936068042 21.22160686 0.408826095 0.079148189 90.77103605 0.609780333 0.012671896 2503.23149 0.1 1 20.28553881 VEESSWLIEDGK ddPTM_HeLa_CUDC101_4h_R1 3 VEESSWLIEDGK 12 0 Q9Y266 Q9Y266 NUDC Nuclear migration protein nudC 0 0 ;; ;; 171.92 4.38E-06 17702100 4202.8 3793.53 3327.2 3612.08 3472.7 3595.92 3472.37 3022.91 4140.28 4454.08 FALSE FALSE TRUE 3710.154155 3910.404163 3507.078496 3759.396235 3216.52584 3527.333817 3606.300474 3367.025855 3969.615906 4427.586934 0.837963028 0.883190826 0.792097038 0.84908468 0.726473785 0.796671837 0.814506983 0.760465216 0.896564193 1 12.11230492 -10.33709145 0.207880691 1.225693086 0.754410299 0.590481016 0.04728729 3.501362078 0.143253073 0.437934848 0.041123047 4.60E-11 10.33709145 -0.471282787 AES(ph)PTPGMAQGMEPGAGQEGAMFVHAR ddPTM_HeLa_CUDC101_4h_R1 1 AESPTPGMAQGMEPGAGQEGAMFVHAR 27 0 A0A0A0MSQ9;Q86VX9-5;Q86VX9 A0A0A0MSQ9 MON1A Vacuolar fusion protein MON1 homolog A 1 0 AES(0.62)PT(0.38)PGMAQGMEPGAGQEGAMFVHAR 144.89 2.34E-11 34334000 745.07 660.92 672.65 695.8 635.53 845.78 646.56 760.94 671 661.69 TRUE FALSE FALSE 657.7340241 681.2821618 709.0154937 724.1777315 588.6482181 829.6481557 671.4980358 847.5623338 643.341096 657.7542385 0.999969268 1.035770082 1.077933751 1.100985276 0.894936412 1.261334564 1.020895034 1.288569931 0.978087344 1 9.36140483 -1 0.407408465 1.002338964 5.115500751 0.41030852 0.090116194 43.53925627 0.508316741 0.018923093 146.1265279 0.1 1 4.113161787 VEETVKHDWDR ddPTM_HeLa_CUDC101_4h_R1 4 VEETVKHDWDR 11 1 E2QRB9;E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881-7;Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881;E9PKD3;A0A0B4J225 E2QRB9 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 0 ;;; ;;; 97.597 0.0091374 270530000 13908.4 13644.4 12617.5 13251.6 13232.4 12124.7 12706.3 15657.5 13525 1105.12 FALSE FALSE TRUE 12278.07844 14064.76779 13299.64022 13792.05753 12256.27221 11893.44155 13196.38625 17439.88651 12967.49378 1098.546697 11.17665591 12.80306775 12.10657704 12.55482135 11.15680585 10.82652342 12.01258561 15.87541664 11.80422627 1 10.10138048 -8.969512537 0.572975773 4.02E-23 12.56913984 0.056159936 3.532992417 0.216167126 0.118545475 1.393568933 0.335526059 1.07E-09 8.969512537 12.56913984 VEEVLEEEEEEYVVEK ddPTM_HeLa_CUDC101_4h_R1 2 VEEVLEEEEEEYVVEK 16 0 C9JWS9;K7ELA4;B5MD17;J3KS05;P83916 C9JWS9 CBX1 Chromobox protein homolog 1 0 0 ; ; 129.29 4.67E-05 1143200 3638.6 2798.6 2647.8 2676.79 3020.1 2583.5 2776.39 2638.6 3337.9 2960.6 FALSE FALSE TRUE 3212.088824 2884.821549 2790.948077 2785.961066 2797.31324 2534.224042 2883.476292 2938.967558 3200.310349 2942.99022 1.091437138 0.980234841 0.948337531 0.946642992 0.950500352 0.861105153 0.979777735 0.998633138 1.087434925 1 11.52306703 -7.040905207 4.867649436 1.043161874 0.946163095 0.58331607 0.041651542 0.131398245 7.356991384 0.007850321 0.009848468 9.10E-08 7.040905207 -0.096998779 DSDAGS(ph)STPTTSTR ddPTM_HeLa_CUDC101_4h_R1 1 DSDAGSSTPTTSTR 14 0 P51532-5;A0A0A0MT49;A0A2R8YGG3;A0A2R8Y440;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;P51532;A0A2R8Y4C5;P51532-4;P51532-2;P51532-3;A0A2R8Y6V2;A0A2R8Y6N0;A0A2R8YG32;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y526;A0A2R8YDA1;A0A2R8Y7Y7;A0A2R8YF58;K7EQF0;A0A2R8Y5K3;A0A2R8Y523;A0A2R8YFK5;K7EP28 P51532-5 SMARCA4 Transcription activator BRG1 1 0 DSDAGS(0.408)S(0.389)T(0.202)PTTSTR 228.38 2.97E-33 131460000 6268.1 4833.5 5232.2 5092.1 5941.8 6156 5749.8 5902.6 4889.9 4989.7 TRUE FALSE FALSE 5533.36282 4982.414406 5515.068559 5299.777848 5503.485252 6038.584557 5971.571712 6574.528125 4688.336252 4960.021042 1.11559261 1.004514772 1.111904266 1.068499065 1.109568932 1.217451399 1.203940802 1.325504079 0.945225073 1 12.27613053 -1 0.313930352 1.037804541 3.701732118 0.801347401 0.048609912 16.32661709 0.208512284 0.015949002 25.15380156 0.1 1 2.663927577 VEFMDDTSR ddPTM_HeLa_CUDC101_4h_R1 1 VEFMDDTSR 9 0 P62857 P62857 RPS28 40S ribosomal protein S28 0 0 168.26 4.12E-06 59015000 2629.6 2721.5 2368.6 2011.2 2803.7 2155.4 2059.1 2673.5 2395.8 2153.5 FALSE FALSE TRUE 2321.362274 2805.346189 2496.653681 2093.225429 2596.876637 2114.289336 2138.520177 2977.840433 2297.04411 2140.690886 1.084398635 1.310486352 1.166284071 0.977827038 1.213102113 0.987666809 0.998985977 1.391065124 1.073038674 1 11.06386077 -8.088772386 1.46951246 1.020855128 1.133943785 0.088370443 0.131890466 0.539213519 2.38114925 0.030298742 0.025115566 8.15E-09 8.088772386 0.113088657 VEGDMQVPDLDIK ddPTM_HeLa_CUDC101_4h_R1 2 VEGDMQVPDLDIK 13 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 ; ; 221.09 6.44E-32 7929000 2950.6 2544.8 2327.1 2515.6 2456.8 2513 2204.94 2542.2 2697.9 2729.8 FALSE FALSE TRUE 2604.735141 2623.202272 2452.910065 2618.197041 2275.566759 2465.068712 2289.985274 2831.593772 2586.69142 2713.563028 0.959894837 0.966700329 0.903944386 0.964855806 0.838589977 0.90842508 0.843903477 1.043496592 0.95324538 1 11.4059727 -7.242109504 0.70980711 0.990212333 0.908378336 0.136025258 0.057298614 0.585779006 0.620062406 0.013964964 0.016844543 5.73E-08 7.242109504 -0.081833998 KETTSGTSTEPVKNS(ph)SPAPPQPAPGK ddPTM_HeLa_CUDC101_4h_R1 2 KETTSGTSTEPVKNSSPAPPQPAPGK 26 2 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 KETTSGTSTEPVKNS(0.5)S(0.5)PAPPQPAPGK;KET(0.001)T(0.001)S(0.001)GT(0.001)S(0.001)T(0.001)EPVKNS(0.498)S(0.498)PAPPQPAPGK ; 98.562 1.53E-06 288030000 6603.2 6283.7 6691.8 6198.5 7602 6825.5 6413 7237.1 7162.9 6659.2 TRUE FALSE FALSE 5829.182906 6477.293349 7053.57895 6451.301622 7041.215605 6695.31496 6660.351558 8060.942211 6867.64223 6619.590782 0.880595659 0.978503591 1.065561178 0.974577105 1.063693488 1.011439405 1.006157598 1.217740262 1.037472324 1 12.69252632 -1 0.455185993 0.952773925 6.248234941 0.441892286 0.0612172 46.7153533 0.498628591 0.014022301 232.5787856 0.1 1 5.295461016 S(ph)GVSITIDDPVR ddPTM_HeLa_CUDC101_4h_R1 4 SGVSITIDDPVR 12 0 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-3;Q9UKV3-2;G3V3B0;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 S(0.983)GVS(0.015)IT(0.002)IDDPVR;S(0.997)GVS(0.003)ITIDDPVR;S(0.961)GVS(0.039)ITIDDPVR;S(0.786)GVS(0.211)IT(0.003)IDDPVR ;;; 165.58 4.22E-05 13755100 7683.9 6440.57 6116.98 6681.39 7680.3 8680.4 7505.2 9768 7407.5 7434.3 TRUE FALSE FALSE 6783.20489 6638.996328 6447.682442 6953.885964 7113.73957 8514.835833 7794.678078 10879.94964 7102.159715 7390.080453 0.917879708 0.898365907 0.872477977 0.940975678 0.962606512 1.152197988 1.054748744 1.472236968 0.961039566 1 12.85137436 -1 0.774980114 0.94786197 109.3320642 0.869303361 0.060870503 110.9576347 0.404941831 0.010389887 21075.55624 0.1 1 108.3842022 VEGQATDEKK(ac)EPK ddPTM_HeLa_CUDC101_4h_R1 1 VEGQATDEKKEPK 13 2 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 0 1 VEGQATDEK(0.323)K(0.677)EPK 98 0.023654 4317000 2759.1 2421.8 2493.5 2632.8 2148.2 2285.8 1963.9 1530.8 2864.2 3471.7 FALSE TRUE FALSE 2435.682481 2496.412787 2628.306152 2740.176964 1989.731566 2242.202173 2039.648281 1705.060084 2746.136464 3451.050174 0.705780084 0.723377714 0.761596042 0.794012496 0.576558284 0.649715901 0.591022494 0.49406992 0.795739362 1 11.75281973 -13.52287874 0.085543242 2.17177734 0.3233219 0.621218177 0.083389609 45.55541553 0.296955806 9.972990234 0.956545592 3.00E-14 13.52287874 -1.84845544 STLTTLPFPGAEANS(ph)PGKAEAEKPR ddPTM_HeLa_CUDC101_4h_R1 2 STLTTLPFPGAEANSPGKAEAEKPR 25 2 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 0 STLTTLPFPGAEANS(1)PGKAEAEKPR;STLTTLPFPGAEANS(1)PGKAEAEKPR ; 91.335 6.58E-06 177608000 7581.8 5855.3 6279.1 6350.1 6841 6195.9 5167.9 5047.6 7817.6 7506.1 TRUE FALSE FALSE 6693.072897 6035.694853 6618.567139 6609.084525 6336.353059 6077.723531 5367.227634 5622.198381 7495.355219 7461.453383 0.897019998 0.808916781 0.887034576 0.885763696 0.849211639 0.814549555 0.719327369 0.753499096 1.004543597 1 12.86524096 -1 0.082350169 1.150422819 0.036241898 0.844805474 0.035046121 48.28284875 0.291539127 0.590393392 6.13921857 0.1 1 -1.114180922 QPCPS(ph)ESDIITEEDKSK ddPTM_HeLa_CUDC101_4h_R1 2 QPCPSESDIITEEDKSK 17 1 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QPCPS(0.994)ES(0.006)DIITEEDKSK;QPCPS(0.986)ES(0.014)DIITEEDKSK ; 111.45 0.00053226 101415000 4319.2 3835.4 4196.5 3846.2 4229.5 4482.5 4381.4 5938.8 3743.9 3487.6 TRUE FALSE FALSE 3812.909923 3953.564128 4423.375484 4003.064661 3917.498211 4397.003781 4550.392066 6614.848987 3589.574857 3466.8556 1.099817922 1.14038904 1.27590416 1.154667261 1.129985977 1.268297353 1.312541562 1.908025528 1.035397857 1 11.75941203 -1 0.6624669 1.073433761 78.69209628 0.893399815 0.080072861 51.47218298 0.294206264 0.015255949 5886.548686 0.1 1 77.61866251 VEIGQK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 VEIGQKR 7 1 H0YER7;G3V1C3;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-2;Q9BZZ5-6;Q9BZZ5 H0YER7 API5 Apoptosis inhibitor 5 0 1 ; VEIGQK(1)R;VEIGQK(1)R 109.01 0.0086498 13669600 6390.1 6290.2 5621.6 5641.1 5205.1 4977.3 5265.4 5268.3 5287.8 5580.9 FALSE TRUE FALSE 5641.062165 6483.993606 5925.5207 5871.168441 4821.130143 4882.366295 5468.488242 5868.021977 5069.834646 5547.704559 1.01682815 1.168770532 1.068103147 1.058305896 0.869031523 0.880069629 0.985720884 1.05773873 0.913861687 1 12.43767524 -5.784303853 24.9978115 1.029694151 0.945962296 0.237540143 0.077740264 265.3619564 290120.6857 0.011074171 0.02008356 1.64E-06 5.784303853 -0.083731855 VEILANDQGNR ddPTM_HeLa_CUDC101_4h_R1 2 VEILANDQGNR 11 0 P17066;P48741 P17066 HSPA6;HSPA7 Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 0 0 ; ; 181.53 8.06E-10 142165000 3187.6 3289.6 2642.75 3171.95 3527.2 3054.7 3064.7 3084.94 3035.37 3177.4 FALSE FALSE TRUE 2813.95436 3390.948677 2785.625059 3301.315831 3267.005483 2996.436687 3182.906506 3436.1171 2910.250764 3158.500683 0.890914596 1.07359441 0.881945372 1.045216121 1.034353261 0.94868958 1.007727028 1.087895 0.921402607 1 11.62502417 -6.230381025 24.84744113 0.954015362 1.020134048 0.251831103 0.061101729 802.5588189 642066.6586 0.009669186 0.016033412 5.88E-07 6.230381025 0.066118686 SGS(ph)IVELIAGGGSSCS(ph)PVLSR ddPTM_HeLa_CUDC101_4h_R1 2 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 2 0 S(0.118)GS(0.881)IVELIAGGGS(0.031)S(0.085)CS(0.882)PVLS(0.003)R;S(0.094)GS(0.812)IVELIAGGGS(0.242)S(0.208)CS(0.643)PVLS(0.001)R ; 107.85 0.00031775 45590000 4352.2 3169.2 2998.3 3489.6 4282.4 4253.6 4363 4103.6 3267.2 2617.7 TRUE FALSE FALSE 3842.041714 3266.839296 3160.397167 3631.920971 3966.495884 4172.469667 4531.282372 4570.737237 3132.524633 2602.129804 1.476498869 1.255448245 1.214542473 1.395749346 1.52432668 1.603482524 1.741374456 1.756536984 1.203831042 1 11.34547722 -1 0.04752316 5.52E-08 4.074943816 0.761569123 0.115263032 190.4071597 0.691791291 14.70770126 58.39142182 0.1 1 4.074943761 ANST(ph)SDSVFTETPSPVLK ddPTM_HeLa_CUDC101_4h_R1 1 ANSTSDSVFTETPSPVLK 18 0 C9JEZ4;Q9UKI2 C9JEZ4 CDC42EP3 Cdc42 effector protein 3 1 0 ANS(0.006)T(0.476)S(0.476)DS(0.042)VFTETPSPVLK 223.93 2.01E-32 33170000 2708.8 2403.3 2227.1 2055.8 3596.8 3890.8 4830.2 6736.8 1566.2 1632.7 TRUE FALSE FALSE 2391.27857 2477.342824 2347.503763 2139.64441 3331.47123 3816.589473 5016.502432 7503.690081 1501.640573 1622.988628 1.473379745 1.526407999 1.446408017 1.318336046 2.052676878 2.351581155 3.090904241 4.623378102 0.925231728 1 10.66443718 -1 0.457511012 1.20039615 84.55917287 0.97264931 0.17829491 8.973640377 0.095304099 0.041139594 707.8091953 0.1 1 83.35877672 up VELAEEDDGEK ddPTM_HeLa_CUDC101_4h_R1 1 VELAEEDDGEK 11 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 0 0 117.7 0.026485 10215000 1997.6 1608.3 1569.6 1384.8 1198.2 1517.1 1352.1 1419.6 1732.8 1979.8 FALSE FALSE TRUE 1763.444356 1657.849817 1654.457324 1441.27813 1109.811173 1488.163845 1404.25095 1581.201526 1661.373251 1968.024062 0.896048169 0.842393063 0.840669256 0.732347819 0.563921547 0.75617157 0.713533425 0.803446237 0.844183404 1 10.94253214 -7.056440195 0.752458877 0.971796377 0.707013811 0.540208769 0.075611869 0.226197282 0.26175855 0.016356314 0.022245338 8.78E-08 7.056440195 -0.264782566 VELQELNDR ddPTM_HeLa_CUDC101_4h_R1 2 VELQELNDR 9 0 P08670;B0YJC4;A0A1B0GTT5;P17661 P08670 VIM;DES Vimentin;Desmin 0 0 ; ; 174.86 1.01E-06 418030000 9100.3 8651.2 8042.7 7240.1 7208.4 7104.7 6808.5 6979.3 7534.5 8013.4 FALSE FALSE TRUE 8033.576629 8917.733218 8477.51269 7535.382572 6676.650693 6969.189685 7071.106126 7773.795301 7223.924721 7965.73594 1.008516563 1.119511528 1.064247265 0.945974437 0.83817123 0.874895896 0.88769025 0.975904218 0.906874741 1 12.95959194 -6.025673759 5.875284771 1.018396622 0.891953474 0.498880904 0.059565886 0.097272996 11.00627444 0.007730814 0.013303971 9.43E-07 6.025673759 -0.126443148 ATLSSTSGLDLMSESGEGEIS(ph)PQREVSR ddPTM_HeLa_CUDC101_4h_R1 3 ATLSSTSGLDLMSESGEGEISPQREVSR 28 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;H0YDG6 E9PMS6 LMO7 LIM domain only protein 7 1 0 ATLSSTSGLDLMS(0.002)ES(0.023)GEGEIS(0.971)PQREVS(0.004)R;ATLSSTSGLDLMS(0.003)ES(0.007)GEGEIS(0.988)PQREVS(0.002)R;ATLSSTSGLDLMS(0.002)ES(0.006)GEGEIS(0.988)PQREVS(0.004)R ;; 112.75 1.09E-10 192894000 1837.89 1681.41 1480.32 1420.42 2331.44 1797.83 1826.24 2406.98 1992.34 1573.4 TRUE FALSE FALSE 1622.45532 1733.212249 1560.350577 1478.350867 2159.454316 1763.539388 1896.678689 2680.980874 1910.214902 1564.041347 1.037348101 1.108162679 0.997640235 0.945212139 1.380688765 1.12755292 1.2126781 1.714136828 1.221332739 1 10.61106294 -1 0.593619031 1.024122631 39.87718263 0.664095831 0.126592523 50.84556497 0.370225416 0.018544479 2565.565463 0.1 1 38.85306 LT(ph)PSPDIIVLS(ph)DNEASSPR ddPTM_HeLa_CUDC101_4h_R1 1 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 0 LT(0.387)PS(0.602)PDIIVLS(0.618)DNEAS(0.166)S(0.226)PR 82.505 0.0205 11396000 1630.5 1451.8 1349 1289.8 1438.8 1457.7 1210.2 1130.7 1745.5 1602.5 TRUE FALSE FALSE 1439.375262 1496.528237 1421.931021 1342.403619 1332.66259 1429.896801 1256.877819 1259.414318 1673.549751 1592.968259 0.903580629 0.939458918 0.892629852 0.842705818 0.8365908 0.897630441 0.789016236 0.790608545 1.050585749 1 10.6375018 -1 0.065583154 1.181834577 0.200148988 0.833781638 0.033012523 70.86182072 0.348505693 0.993591939 6.543881822 0.1 1 -0.981685589 VDS(ph)TTCLFPVEEK ddPTM_HeLa_CUDC101_4h_R1 4 VDSTTCLFPVEEK 13 0 A0A6I8PRN4;A0A6I8PTT9;Q06210-2;Q06210 A0A6I8PRN4 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 1 0 VDS(0.498)T(0.498)T(0.005)CLFPVEEK;VDS(0.63)T(0.185)T(0.185)CLFPVEEK;VDS(0.654)T(0.173)T(0.173)CLFPVEEK;VDS(0.333)T(0.333)T(0.333)CLFPVEEK ;;; 290.17 1.24E-103 891128200 23943.9 16689.9 19398.8 17250.6 24154.5 24305.4 26810.6 31525.5 17637.9 7357.6 TRUE FALSE FALSE 21137.23234 17204.09604 20447.55781 17954.15403 22372.67066 23841.81499 27844.69382 35114.23549 16910.8583 7313.836668 2.890033412 2.352266918 2.795736183 2.454820205 3.058951365 3.259823274 3.807125465 4.801069136 2.312173359 1 12.83641269 -1 0.093961278 6.20E-17 12.08102604 0.744302663 0.481025696 44.20734383 0.299169837 4.885373761 69.12925457 0.1 1 12.08102604 up VNPVTSLSENYT(ph)CSDSEESSEKDKLAIPK ddPTM_HeLa_CUDC101_4h_R1 2 VNPVTSLSENYTCSDSEESSEKDKLAIPK 29 2 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 VNPVTSLS(0.002)ENY(0.042)T(0.475)CS(0.475)DS(0.004)EES(0.001)SEKDKLAIPK;VNPVT(0.001)S(0.001)LS(0.059)ENY(0.139)T(0.448)CS(0.332)DS(0.013)EES(0.004)S(0.004)EKDKLAIPK ; 71.524 5.67E-05 167548200 2457.84 2311.9 2458.62 2380.72 3505.13 2711.27 2938.91 3137.54 2800.07 1663.39 TRUE FALSE FALSE 2169.735721 2383.126899 2591.540434 2477.816052 3246.563543 2659.557042 3052.264743 3494.704871 2684.649929 1653.496082 1.312210984 1.441265525 1.567309691 1.498531553 1.963454028 1.608444719 1.84594616 2.113524736 1.623620375 1 10.69130391 -1 0.105574668 0.612378264 4.946480193 0.441065174 0.22875724 22.77518552 0.169821145 0.753104658 14.40142787 0.1 1 4.334101929 AGLESGAEPGDGDS(ph)DTTKKK ddPTM_HeLa_CUDC101_4h_R1 4 AGLESGAEPGDGDSDTTKKK 20 2 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 0 AGLESGAEPGDGDS(0.551)DT(0.224)T(0.224)KKK;AGLESGAEPGDGDS(0.997)DT(0.001)T(0.001)KKK;AGLESGAEPGDGDS(0.636)DT(0.199)T(0.164)KKK;AGLESGAEPGDGDS(0.491)DT(0.228)T(0.281)KKK ;;; 114.37 7.17E-05 469061000 14519 16564.7 17775.5 16815.9 20130.2 17240.7 18535.1 21598.7 17187.7 13595.4 TRUE FALSE FALSE 12817.10483 17075.03877 18736.4973 17501.72509 18645.23525 16911.86237 19250.00502 24057.4087 16479.21573 13514.53396 0.948394142 1.263457462 1.386396109 1.295029865 1.379643228 1.25138332 1.424392811 1.780113823 1.219369886 1 13.72222414 -1 0.192013682 0.897014997 4.481480968 0.560775347 0.145708416 19.82957919 0.222905332 0.146033981 21.27667119 0.1 1 3.584465972 GGREGFES(ph)DTDSEFTFK ddPTM_HeLa_CUDC101_4h_R1 4 GGREGFESDTDSEFTFK 17 1 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;E9PMP7 E9PMS6 LMO7 LIM domain only protein 7 1 0 GGREGFES(0.862)DT(0.088)DS(0.049)EFT(0.001)FK;GGREGFES(0.944)DT(0.054)DS(0.001)EFTFK;GGREGFES(0.986)DT(0.014)DSEFTFK;GGREGFES(0.992)DT(0.005)DS(0.003)EFTFK ;;; 89.816 0.0039909 64596000 8262.6 8080.4 8487.3 7193.4 9820.6 8882.5 9287.9 11224.8 8483.9 7628.8 TRUE FALSE FALSE 7294.070553 8329.347546 8946.149111 7486.777945 9096.153903 8713.081112 9646.137414 12502.58586 8134.190051 7583.423558 0.961844014 1.098362433 1.179697935 0.987255675 1.199478551 1.148964059 1.272002987 1.648673025 1.072627684 1 12.88863359 -1 0.469088149 0.994122267 17.063984 0.834106475 0.077221511 20.1564431 0.20863862 0.015327345 316.2647377 0.1 1 16.06986174 GKGGVTGSPEASISGS(ph)KGDLK ddPTM_HeLa_CUDC101_4h_R1 1 GKGGVTGSPEASISGSKGDLK 21 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GKGGVTGSPEAS(0.001)IS(0.059)GS(0.94)KGDLK 117 4.18E-06 60412000 1908.1 1914.6 1797.6 1311 2195 2065.9 1878.7 2177.8 1690.1 1400.5 TRUE FALSE FALSE 1684.43541 1973.586557 1894.783693 1364.468247 2033.079223 2026.4964 1951.162088 2425.711949 1620.433363 1392.169764 1.20993535 1.417633544 1.361029195 0.980101912 1.460367317 1.455638854 1.401525977 1.742396662 1.163962474 1 10.44311943 -1 0.126968161 0.893100206 3.236823236 0.538033027 0.150264837 41.46578869 0.357245426 0.532211868 17.40059679 0.1 1 2.34372303 HYEDGYPGGSDNYGS(ph)LSR ddPTM_HeLa_CUDC101_4h_R1 2 HYEDGYPGGSDNYGSLSR 18 0 O60716-5;O60716-3;A0A669KB05;O60716;O60716-2;O60716-8;O60716-7;A0A669KB62;C9JZR2;O60716-19;O60716-4;O60716-6;O60716-11;O60716-13;O60716-21;O60716-24;O60716-9;O60716-17;O60716-16;O60716-10;O60716-23;O60716-15;O60716-18;O60716-12;O60716-22;O60716-20;O60716-14 O60716-5 CTNND1 Catenin delta-1 1 0 HYEDGYPGGSDNYGS(1)LSR;HYEDGYPGGSDNYGS(0.964)LS(0.036)R ; 256.33 2.64E-70 84832000 7546.6 6087.5 6099.9 6204.3 7554.5 7335.8 7289.3 6522.7 5875.4 6016.8 TRUE FALSE FALSE 6661.998988 6275.04866 6429.679045 6457.338171 6997.219586 7195.881837 7570.450743 7265.217802 5633.213525 5981.011806 1.113858191 1.049161724 1.075015274 1.079639763 1.169905664 1.203121156 1.2657475 1.214713837 0.941849591 1 12.54617385 -1 0.168864348 0.9980356 2.080763875 0.794217032 0.043911586 20.63480418 0.21586199 0.064737629 5.664136487 0.1 1 1.082728275 VENNLIVDK(ac)ATK ddPTM_HeLa_CUDC101_4h_R1 2 VENNLIVDKATK 12 1 A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7W5;A0A2R8YCQ1;A0A2R8Y7Y0;A0A2R8YD28 A0A2R8Y4Z0 CDK13 Cyclin-dependent kinase 13 0 1 ; VENNLIVDK(1)ATK;VENNLIVDK(1)ATK 154.36 4.33E-09 398450 1064.09 645.77 644.23 491.69 1044.07 819.4 860.57 668.17 797.23 669.4 FALSE TRUE FALSE 939.3589833 665.6654083 679.0590225 511.7432435 967.0510362 803.7713102 893.7624732 744.231772 764.367842 665.418379 1.411681752 1.000371239 1.020499349 0.769054868 1.453297755 1.20791871 1.343158682 1.118441864 1.14870263 1 9.378117904 -9.782523849 1.771203221 0.999659883 1.206101055 0 0.204244559 0.670897017 3.809125252 0.157250662 0.033207119 1.65E-10 9.782523849 0.206441172 VENQENVSNLVIEDTELK ddPTM_HeLa_CUDC101_4h_R1 2 VENQENVSNLVIEDTELK 18 0 Q01518-2;Q01518 Q01518-2 CAP1 Adenylyl cyclase-associated protein 1 0 0 ; ; 184.87 2.03E-10 14997800 3022.9 2531.83 2413.63 2678.88 2480.1 2149.48 2161.48 3097.5 2771.95 3468.52 FALSE FALSE TRUE 2668.560244 2609.832681 2544.118139 2788.136306 2297.147964 2108.48225 2244.849008 3450.106879 2657.689048 3447.889089 0.773969283 0.756936379 0.737877024 0.80865023 0.666247639 0.611528444 0.65107924 1.000643231 0.770816282 1 11.75149765 -8.95411231 0.510381219 1.034393095 0.729552189 0.032854478 0.123703752 0.818375574 0.348185443 0.120639104 0.027559032 1.11E-09 8.95411231 -0.304840906 IKTEPSSPLS(ph)DPSDIIR ddPTM_HeLa_CUDC101_4h_R1 1 IKTEPSSPLSDPSDIIR 17 1 Q9ULJ3-2;Q9ULJ3 Q9ULJ3-2 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 0 IKT(0.007)EPS(0.02)S(0.157)PLS(0.657)DPS(0.159)DIIR 55.782 0.034988 25019000 2197.3 2025.7 1941.3 1726.6 2240 2460.4 1985.1 2460.3 2542.6 2042 TRUE FALSE FALSE 1939.735825 2088.109416 2046.25255 1797.018211 2074.759663 2413.471969 2061.665972 2740.370607 2437.792952 2029.854093 0.955603573 1.028699266 1.008078638 0.885294277 1.02212256 1.188987907 1.015672003 1.350033294 1.200969548 1 10.98716031 -1 0.667707274 0.980390514 35.37749801 0.434428593 0.098749513 90.92056983 0.50963075 0.011142481 4649.125885 0.1 1 34.3971075 KLGAGEGGEASVSPEKT(ph)STTSK ddPTM_HeLa_CUDC101_4h_R1 1 KLGAGEGGEASVSPEKTSTTSK 22 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 KLGAGEGGEAS(0.037)VS(0.22)PEKT(0.47)S(0.174)T(0.065)T(0.025)S(0.009)K 80.016 0.0030961 129120000 3335.2 3543.5 3640 3467.9 4811.2 3683.7 3790 4871.5 4147.7 3595.9 TRUE FALSE FALSE 2944.252912 3652.671035 3836.78941 3609.335952 4456.287361 3613.43956 3936.18157 5426.051869 3976.73005 3574.511427 0.823679815 1.021865816 1.073374499 1.009742457 1.246684324 1.010890477 1.101180301 1.5179842 1.112524084 1 11.80353035 -1 0.41753695 0.930266984 10.19638104 0.523055925 0.120603242 32.21426441 0.369825045 0.027629864 251.4055789 0.1 1 9.266114057 SMSSIPPYPASSLAS(ph)SSPPGSGR ddPTM_HeLa_CUDC101_4h_R1 1 SMSSIPPYPASSLASSSPPGSGR 23 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 SMSSIPPYPAS(0.008)S(0.008)LAS(0.363)S(0.363)S(0.249)PPGS(0.009)GR 167.97 4.31E-09 28247000 5034.2 4318.2 3951.9 4186.8 5012.3 4665.8 4423.5 4839.4 4679.4 4440.4 TRUE FALSE FALSE 4444.098707 4451.238624 4165.551668 4357.555801 4642.552615 4576.807639 4594.115877 5390.297734 4486.513151 4413.988303 1.006821587 1.008439152 0.943716064 0.987215077 1.051781812 1.036887124 1.040808349 1.221185324 1.016430684 1 12.10786709 -1 0.930376916 1.00044053 135.8336361 0.858512785 0.026205005 272.5527772 0.488667501 0.003943595 78170.35312 0.1 1 134.8331955 TASESISNLS(ph)EAGS(ph)IKKGER ddPTM_HeLa_CUDC101_4h_R1 1 TASESISNLSEAGSIKKGER 20 2 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 2 0 TASESIS(0.002)NLS(0.998)EAGS(1)IKKGER 55.247 0.017847 23869000 2103 1598.9 1790.4 1697.5 2772.8 2899.2 2855.1 4144.1 1580.1 1686.7 TRUE FALSE FALSE 1856.489528 1648.160214 1887.19444 1766.731387 2568.256068 2843.90259 2965.222163 4615.847593 1514.967609 1676.667433 1.107249709 0.98299769 1.125562769 1.053716051 1.531762362 1.696163791 1.768521356 2.752989353 0.903558797 1 10.71138084 -1 0.476153035 1.029169166 47.07870515 0.948860149 0.122453708 11.60586015 0.118182299 0.023073841 531.6660587 0.1 1 46.04953599 up IGEEQS(ph)AEDAEDGPPELLFIHGGHTAK ddPTM_HeLa_CUDC101_4h_R1 4 IGEEQSAEDAEDGPPELLFIHGGHTAK 27 0 E9PC52;Q16576;Q16576-2;Q5JNZ6 E9PC52 RBBP7 Histone-binding protein RBBP7 1 0 IGEEQS(1)AEDAEDGPPELLFIHGGHTAK;IGEEQS(1)AEDAEDGPPELLFIHGGHTAK;IGEEQS(1)AEDAEDGPPELLFIHGGHTAK;IGEEQS(1)AEDAEDGPPELLFIHGGHTAK ;;; 117.65 4.20E-09 86679700 8424.38 8191.64 7787.66 7385.16 9623.23 8816.96 7681.07 8774.33 7380.88 7369.52 TRUE FALSE FALSE 7436.886947 8444.014719 8208.684456 7686.358746 8913.343495 8648.791178 7977.331443 9773.16426 7076.637002 7325.685767 1.015179627 1.152658603 1.120534612 1.049234023 1.216724792 1.180611816 1.088953539 1.334095479 0.966003351 1 12.8387481 -1 0.163110682 0.957740584 2.143824852 0.640141217 0.064170457 28.20634455 0.288858576 0.105680203 8.11666415 0.1 1 1.186084268 MVIQGPSS(ph)PQGEAMVTDVLEDQKEGR ddPTM_HeLa_CUDC101_4h_R1 6 MVIQGPSSPQGEAMVTDVLEDQKEGR 26 1 Q12888;Q12888-3;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 MVIQGPS(0.212)S(0.787)PQGEAMVT(0.001)DVLEDQKEGR;MVIQGPS(0.266)S(0.713)PQGEAMVT(0.021)DVLEDQKEGR;MVIQGPS(0.33)S(0.67)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.251)S(0.749)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.244)S(0.756)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.24)S(0.76)PQGEAMVTDVLEDQKEGR ;;;;; 183.46 2.07E-17 711984000 14369.5 13648.3 13027.4 13226.6 16024.6 14011 14131.9 14337.5 15132.6 13084.7 TRUE FALSE FALSE 12685.12899 14068.78795 13731.70065 13766.03792 14842.49718 13743.76352 14676.97212 15969.62305 14508.82782 13006.87162 0.975263642 1.081642716 1.055726623 1.058366556 1.141127368 1.056654045 1.128401398 1.227783552 1.115474054 1 13.66698639 -1 0.238561051 0.977220014 2.350134502 0.368767239 0.055038226 16.63176733 0.204770092 0.02389574 9.122999494 0.1 1 1.372914488 QLPLEPESPS(ph)GQVGPRPAPPQEES(ph)PSSEAK ddPTM_HeLa_CUDC101_4h_R1 1 QLPLEPESPSGQVGPRPAPPQEESPSSEAK 30 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 QLPLEPES(0.31)PS(0.474)GQVGPRPAPPQEES(0.621)PS(0.427)S(0.169)EAK 52.674 0.014703 25775000 2662.5 2365.6 2767.4 2316.4 2835.1 2745.5 2514.4 3012.8 2625.3 2529.2 TRUE FALSE FALSE 2350.405786 2438.481332 2917.014015 2410.872804 2625.960321 2693.134162 2611.38125 3355.764974 2517.084023 2514.156206 0.934868637 0.969900488 1.160235791 0.958919258 1.044469836 1.071188081 1.038671044 1.334748003 1.001164533 1 11.29585857 -1 0.744557689 0.983737719 57.07223712 0.659546361 0.065670584 149.7297744 0.620504096 0.01086278 14090.15535 0.1 1 56.0884994 S(ph)ESFSSEDLIPSR ddPTM_HeLa_CUDC101_4h_R1 1 SESFSSEDLIPSR 13 0 Q9P219-3;Q9P219-2;Q9P219;A0A0A0MR69 Q9P219-3 CCDC88C Protein Daple 1 0 S(0.947)ES(0.053)FSSEDLIPSR 96.371 0.012081 5796200 1076.8 908.04 818.98 986.53 1280.1 1300.2 1161.1 1554.8 1019.6 987.52 TRUE FALSE FALSE 950.5791363 936.0156361 863.2565361 1026.764958 1185.669573 1275.400851 1205.884016 1731.792147 977.5716564 981.6461871 0.968352089 0.953516296 0.879396821 1.045962355 1.207838006 1.299246987 1.228430398 1.764171419 0.995849288 1 9.93905932 -1 0.507457591 0.973434905 26.36854833 0.890556891 0.081601061 21.9744744 0.206933885 0.016052762 600.6140716 0.1 1 25.39511342 SDSQAS(ph)LTVPLSPQVVR ddPTM_HeLa_CUDC101_4h_R1 1 SDSQASLTVPLSPQVVR 17 0 Q8TEV9-2;Q8TEV9 Q8TEV9-2 SMCR8 Smith-Magenis syndrome chromosomal region candidate gene 8 protein 1 0 S(0.061)DS(0.025)QAS(0.913)LT(0.001)VPLSPQVVR 124.98 0.00028674 8392200 663.23 495.75 609.23 564.79 763.42 618.26 621.22 721.49 573.11 568.75 TRUE FALSE FALSE 585.4871848 511.0234699 642.1668166 587.8245774 707.1040275 606.4677206 645.1806635 803.6215052 549.4861632 565.3670497 1.035587739 0.903879117 1.135840543 1.039722031 1.250699042 1.072697323 1.141171322 1.421415531 0.971910485 1 9.143043993 -1 0.411899899 1.011193535 7.321615314 0.661046967 0.082811747 28.87539646 0.334665245 0.018156539 150.8027599 0.1 1 6.310421779 VEQFPDASGSLK ddPTM_HeLa_CUDC101_4h_R1 3 VEQFPDASGSLK 12 0 Q96L96 Q96L96 ALPK3 Alpha-protein kinase 3 0 0 ;; ;; 97.452 0.012706 54134000 3958.4 3484.6 3704.2 4716.5 4285.7 4259.9 4160 3618.03 4562.1 4654.1 FALSE FALSE TRUE 3494.402353 3591.956396 3904.460257 4908.859256 3969.552449 4178.649505 4320.452594 4029.891911 4374.048307 4626.417206 0.755315009 0.776401314 0.843949018 1.061049844 0.858018694 0.903215019 0.933865754 0.871061068 0.945450467 1 12.17567966 TSLAGDT(ph)SNSSSPASTGAK ddPTM_HeLa_CUDC101_4h_R1 1 TSLAGDTSNSSSPASTGAK 19 0 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;H0Y390;Q9UPN3-5;H0Y314;H3BPE1;H3BQK9;H0Y6T5;H0Y4F5 A0A590UJG2;H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 T(0.012)S(0.003)LAGDT(0.764)S(0.193)NS(0.013)S(0.013)S(0.002)PASTGAK 122.75 0.0002565 12887000 2656.6 2107.2 2778 2555.3 2970.9 2813.8 3121.4 3330 2672.7 2501 TRUE FALSE FALSE 2345.197375 2172.120334 2928.187083 2659.516179 2751.742626 2760.131453 3241.793444 3709.07374 2562.530175 2486.123941 0.943314747 0.873697525 1.17781219 1.069744004 1.106840484 1.110214743 1.303954879 1.49191023 1.030733075 1 11.27968251 -1 0.420765065 0.969496094 11.07127075 0.818123275 0.07283808 18.43395292 0.210439217 0.016524531 158.3963128 0.1 1 10.10177466 AVAGVMITAS(ph)HNR ddPTM_HeLa_CUDC101_4h_R1 1 AVAGVMITASHNR 13 0 Q6PCE3 Q6PCE3 PGM2L1 "Glucose 1,6-bisphosphate synthase" 1 0 AVAGVMIT(0.042)AS(0.958)HNR 172.43 2.49E-07 20750000 5548.6 3608.5 3707.8 4207.2 4816.3 5151.7 5609.3 6189.5 3702.5 3371.5 TRUE FALSE FALSE 4898.201519 3719.673608 3908.254883 4378.787801 4461.011144 5053.439906 5825.65258 6894.087661 3549.881383 3351.446168 1.461518781 1.109871208 1.166139836 1.306536815 1.331070505 1.507838602 1.738250381 2.057048604 1.059208833 1 11.71056805 -1 0.436794054 1.188497876 20.02836822 0.855809772 0.119062603 27.61428706 0.30602685 0.037461114 464.2066298 0.1 1 18.83987035 up SITS(ph)TPLSGK ddPTM_HeLa_CUDC101_4h_R1 2 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3 RAI14 Ankycorbin 1 0 S(0.001)IT(0.054)S(0.704)T(0.241)PLS(0.001)GK;SIT(0.1)S(0.45)T(0.45)PLSGK ; 160.67 6.10E-05 40419000 7789.1 8701.4 8480.3 9234.6 12375.7 11681.1 12491.6 16374.4 8351 8672.3 TRUE FALSE FALSE 6876.073506 8969.47982 8938.77067 9611.226903 11462.76927 11458.30248 12973.4052 18238.39551 8006.768245 8620.716774 0.797622018 1.040456386 1.036894136 1.114898814 1.329677052 1.329158906 1.504910269 2.115647224 0.928782195 1 13.07359211 -1 0.409713181 0.904371365 21.59339391 0.941639433 0.086959262 12.26735629 0.142689724 0.026023369 208.6072352 0.1 1 20.68902255 up GYYSPYSVSGSGS(ph)TAGSR ddPTM_HeLa_CUDC101_4h_R1 2 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 GYYSPYSVS(0.075)GS(0.102)GS(0.73)T(0.094)AGSR;GYYS(0.145)PYS(0.145)VS(0.106)GS(0.043)GS(0.496)T(0.058)AGS(0.007)R ; 160.03 2.77E-05 306758000 3371.6 3103.9 2683.4 2670.8 3626 3345.5 2966.2 3629.6 2680.3 2901.8 TRUE FALSE FALSE 2976.386159 3199.52748 2828.472721 2779.726768 3358.517204 3281.690161 3080.607328 4042.778993 2569.8169 2884.539965 1.031840847 1.109198527 0.980562847 0.963663809 1.164316406 1.137682335 1.067971796 1.401533361 0.890893151 1 11.49412554 -1 0.675748225 1.021267241 37.89125305 0.676089404 0.076874067 89.40973185 0.486186157 0.010569655 4967.086663 0.1 1 36.86998581 MTNNEDSLS(ph)PTSSTLSNLELDAAEK ddPTM_HeLa_CUDC101_4h_R1 2 MTNNEDSLSPTSSTLSNLELDAAEK 25 0 Q9ULH7-4;Q9ULH7;Q9ULH7-5 Q9ULH7-4 MKL2 MKL/myocardin-like protein 2 1 0 MT(0.005)NNEDS(0.234)LS(0.594)PT(0.017)S(0.007)S(0.007)T(0.007)LS(0.126)NLELDAAEK;MT(0.009)NNEDS(0.056)LS(0.33)PT(0.127)S(0.169)S(0.226)T(0.072)LS(0.01)NLELDAAEK ; 71.105 0.00032139 5933800 3102.17 2344.2 2288.37 2351.07 2821.8 2696.33 2125.6 1824 2670.23 2976.5 TRUE FALSE FALSE 2738.538335 2416.422023 2412.086204 2446.956797 2613.641436 2644.901998 2207.585104 2031.636787 2560.161989 2958.795646 0.925558458 0.816691084 0.815225684 0.827011085 0.883346384 0.893911684 0.746109353 0.686643158 0.86527165 1 11.53079434 -1 0.091118354 1.134523605 0.014773561 0.386568789 0.066295 58.49902148 0.385656673 0.626485983 8.226128342 0.1 1 -1.119750044 SVVSDLEADDVKGSVPLS(ph)SSPPATHFPDETEITNPVPK ddPTM_HeLa_CUDC101_4h_R1 2 SVVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK 38 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 0 SVVS(0.001)DLEADDVKGS(0.003)VPLS(0.237)S(0.237)S(0.237)PPAT(0.237)HFPDET(0.034)EIT(0.014)NPVPK;SVVSDLEADDVKGS(0.001)VPLS(0.309)S(0.309)S(0.309)PPAT(0.07)HFPDETEITNPVPK ; 80.721 1.56E-09 564600000 8971.4 7218.22 7380.2 7252.8 9277.9 8599.6 8693.9 8198.6 6803.2 6911.3 TRUE FALSE FALSE 7919.786092 7440.604803 7779.195936 7548.600533 8593.487801 8435.576958 9029.226635 9131.895484 6522.769216 6870.19128 1.152775195 1.083027313 1.132311404 1.098746778 1.25083676 1.227851833 1.314261316 1.32920542 0.949430511 1 12.74613455 -1 0.150928173 0.984231293 2.30566635 0.848769781 0.046882369 20.03006412 0.195089995 0.100496236 5.828419435 0.1 1 1.321435057 VETFSGVYK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 VETFSGVYKK 10 1 A0A2R8Y623;P62081 A0A2R8Y623 RPS7 40S ribosomal protein S7 0 1 VETFSGVYK(1)K 135.55 0.0013603 3253900 1771.3 659.11 793.13 502.18 1766.7 1468.3 1570.5 1286.1 1709.1 1142.1 FALSE TRUE FALSE 1563.670899 679.4163979 836.0090069 522.661071 1636.374061 1440.294624 1631.074711 1432.504425 1638.650175 1135.306738 1.377311388 0.598443024 0.736372804 0.460369919 1.44134973 1.268639193 1.436681961 1.261777436 1.443354575 1 10.14886642 KAYS(ph)FCGTVEYMAPEVVNR ddPTM_HeLa_CUDC101_4h_R1 2 KAYSFCGTVEYMAPEVVNR 19 1 B4DG22;B1AXG1;B7ZB17;P51812;E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2;Q9UK32-2;Q9UK32 B4DG22 RPS6KA3;RPS6KA1;RPS6KA6 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-6 1 0 KAY(0.064)S(0.936)FCGTVEYMAPEVVNR;KAY(0.087)S(0.911)FCGT(0.002)VEYMAPEVVNR ; 90.084 0.0018854 188698000 4140.7 3439.4 3620.7 3227.2 4285.3 5023.7 4814.3 4954.6 3295.52 2648.08 TRUE FALSE FALSE 3655.333423 3545.363837 3816.445994 3358.819165 3969.181957 4927.881293 4999.989164 5518.611637 3159.677271 2632.329102 1.388630859 1.346854325 1.449836189 1.275987551 1.507859315 1.872061243 1.899454426 2.096474803 1.200335197 1 11.36212416 -1 0.189771151 1.014331981 5.995883308 0.891474429 0.108365189 13.04414887 0.145740314 0.137992064 19.15439821 0.1 1 4.981551327 up LATKSS(ph)PVKVGEK ddPTM_HeLa_CUDC101_4h_R1 1 LATKSSPVKVGEK 13 2 P49916-4;P49916-2;P49916-3;P49916 P49916-4 LIG3 DNA ligase 3 1 0 LATKS(0.039)S(0.96)PVKVGEK 79.346 0.027133 44697000 2443.8 2658.7 2875.9 3283.3 3869.4 3242.3 3546.8 4641.9 2453.7 1379.8 TRUE FALSE FALSE 2157.341469 2740.611396 3031.379853 3417.207166 3583.962071 3180.45853 3683.601264 5170.315133 2352.557447 1371.592888 1.572873035 1.998123072 2.210116339 2.491415051 2.612992603 2.318806518 2.685637477 3.769569802 1.715200966 1 10.42163661 -1 0.125330289 0.412285144 10.15234707 0.775663685 0.337055987 18.1672706 0.154999838 0.9938061 31.21134924 0.1 1 9.740061922 up RGGIPAS(ph)PIDPFQSR ddPTM_HeLa_CUDC101_4h_R1 2 RGGIPASPIDPFQSR 15 1 Q96LD4-2;Q96LD4 Q96LD4-2 TRIM47 Tripartite motif-containing protein 47 1 0 RGGIPAS(0.999)PIDPFQS(0.001)R;RGGIPAS(0.993)PIDPFQS(0.007)R ; 66.702 0.025235 23599000 2132.22 1781.09 2613.3 2549.7 3379.5 3411 3417.3 5157.2 2682.8 2818.4 TRUE FALSE FALSE 1882.284404 1835.963272 2754.582903 2653.687787 3130.201018 3345.940858 3549.106406 5744.274802 2572.213848 2801.636031 0.671851869 0.655318268 0.983205124 0.947192197 1.117276114 1.194281063 1.266797816 2.050328714 0.918111353 1 11.45205383 -1 0.576238648 0.838652336 64.30814376 0.884444516 0.127075219 38.25894868 0.294726289 0.028596027 3045.364913 0.1 1 63.46949142 up AYS(ph)FCGTVEYMAPEVVNR ddPTM_HeLa_CUDC101_4h_R1 8 AYSFCGTVEYMAPEVVNR 18 0 B4DG22;B1AXG1;B7ZB17;P51812;E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2;Q9UK32-2;Q9UK32 B4DG22 RPS6KA3;RPS6KA1;RPS6KA6 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1;Ribosomal protein S6 kinase alpha-6 1 0 AYS(0.778)FCGT(0.222)VEYMAPEVVNR;AYS(0.97)FCGT(0.025)VEY(0.005)MAPEVVNR;AYS(0.982)FCGT(0.004)VEY(0.014)MAPEVVNR;AYS(0.956)FCGT(0.043)VEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR;AYS(1)FCGTVEYMAPEVVNR ;;;;;;; 256.98 2.50E-70 308157700 8098.63 7039.34 6842.67 6725.88 8431.23 8551.87 8568.32 8913.81 6792.69 5205.81 TRUE FALSE FALSE 7149.320868 7256.213722 7212.605438 7000.190458 7809.27496 8388.757328 8898.802973 9928.5221 6512.692443 5174.845611 1.381552496 1.402208736 1.393781763 1.352734165 1.509083661 1.621064271 1.719626756 1.918612234 1.25852884 1 12.33730011 -1 0.096178249 0.698107988 3.935310004 0.839007009 0.096920201 28.15510482 0.194330438 0.805298408 12.07596822 0.1 1 3.237202016 DFSS(ph)LRT(ph)SDSY(ph)RIDPRNLGR ddPTM_HeLa_CUDC101_4h_R1 1 DFSSLRTSDSYRIDPRNLGR 20 3 O75604 O75604 USP2 Ubiquitin carboxyl-terminal hydrolase 2 3 0 DFS(0.2)S(0.762)LRT(0.471)S(0.472)DS(0.182)Y(0.913)RIDPRNLGR 42.068 0.0033801 0 182.07 504.3 281.56 296.94 411.33 369.18 327.92 434.01 373.3 385.19 TRUE FALSE FALSE 160.7280306 519.8368853 296.7819853 309.0504967 380.9870054 362.1385066 340.5679842 483.4159441 357.912416 382.8988727 0.419766267 1.357634932 0.775092345 0.807133472 0.995006861 0.945781073 0.889446296 1.262515976 0.934743979 1 8.580819603 -1 0.416888734 0.771993116 8.647579272 0.055815302 0.238639357 89.19614619 1.02513082 0.065578227 590.4590339 0.1 1 7.875586156 VEVERDNLAEDIMR ddPTM_HeLa_CUDC101_4h_R1 4 VEVERDNLAEDIMR 14 1 P08670;B0YJC4 P08670 VIM Vimentin 0 0 ;;; ;;; 199.8 1.59E-16 297805000 11906.8 13745.9 13971.5 13184.6 20678.9 14936.4 16753.1 20276.9 14851 11794.4 FALSE FALSE TRUE 10511.10295 14169.39489 14726.84155 13722.32498 19153.45875 14651.51306 17399.27268 22585.14033 14238.83549 11724.24638 0.896526959 1.208554855 1.256101336 1.170422774 1.633662251 1.249676318 1.484041883 1.926361797 1.214477675 1 13.51720757 -2.67448455 0.275108467 0.915045482 3.844049641 0.634795944 0.173797658 6.883236398 0.195688161 0.075565813 8.062872211 0.002115999 2.67448455 2.929004159 VEVGKDQEFTVDTR ddPTM_HeLa_CUDC101_4h_R1 1 VEVGKDQEFTVDTR 14 1 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 0 143.76 0.00051227 16398000 4427.5 3921.3 4022 4277.6 4563.1 4692.6 4446.8 4982.8 4354.3 4232.3 FALSE FALSE TRUE 3908.515162 4042.110605 4239.441486 4452.059017 4226.489204 4603.096473 4618.314566 5550.021811 4174.813911 4207.126091 0.929022586 0.960777147 1.007681109 1.058218585 1.004602456 1.094118972 1.09773619 1.319195501 0.992319655 1 12.03861934 -1 0.516591177 0.968587051 13.02668915 0.893666048 0.034029388 24.28644798 0.223184525 0.007485187 322.1362766 0.1 1 12.0581021 DTSSITSCGDGNVVKQEQLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 DTSSITSCGDGNVVKQEQLSPK 22 1 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 0 DTSSITSCGDGNVVKQEQLS(1)PK 95.519 0.0001448 26103000 1391.3 1570.5 1666.4 1481.7 2266.6 1766.9 1763.6 2397 1914.8 1135.4 TRUE FALSE FALSE 1228.213923 1618.885243 1756.490625 1542.13013 2099.397434 1733.199326 1831.622643 2669.864791 1835.871134 1128.64659 1.088218344 1.434359752 1.556280451 1.366353422 1.860101693 1.535643966 1.622848692 2.365545436 1.626612927 1 10.14037809 -1 0.181488521 0.872789236 6.346127476 0.418830366 0.278579049 17.62528319 0.192244678 0.231575741 26.83167958 0.1 1 5.473338241 ERS(ph)PALKSPLQSVVVR ddPTM_HeLa_CUDC101_4h_R1 1 ERSPALKSPLQSVVVR 16 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 0 ERS(1)PALKSPLQSVVVR 85.976 0.0095551 747850000 2412.9 2480.2 2462.9 2493.9 3752.5 3129.2 2983 3691.8 3060.3 1634 TRUE FALSE FALSE 2130.06352 2556.612022 2596.051824 2595.612022 3475.685551 3069.515724 3098.055309 4112.059589 2934.153139 1624.280895 1.311388643 1.57399624 1.598277632 1.598006865 2.139830346 1.889769025 1.907339622 2.531618516 1.806432094 1 10.66558543 -1 0.136360971 0.725080291 6.451765056 0.465197522 0.296181343 15.75219447 0.143001677 0.427637957 17.56328549 0.1 1 5.726684765 ITS(ph)PLMEPSSIEK ddPTM_HeLa_CUDC101_4h_R1 1 ITSPLMEPSSIEK 13 0 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 0 IT(0.001)S(0.999)PLMEPSSIEK 201.09 9.66E-17 33378000 5209 4736.6 4376.4 4324.4 5334.3 4996.9 5345 6026.1 3986.8 4241 TRUE FALSE FALSE 4598.408916 4882.529032 4613.001422 4500.767724 4940.799316 4901.592458 5551.15844 6712.086866 3822.462417 4215.774343 1.090762584 1.15815711 1.09422399 1.067601669 1.171979075 1.162679038 1.316758913 1.592136182 0.906704701 1 12.04158193 -1 0.518629662 1.049822935 20.55847965 0.8793652 0.062008328 20.02773892 0.183024949 0.009723472 431.8577872 0.1 1 19.50865672 LEQLCEEFS(ph)EEERVR ddPTM_HeLa_CUDC101_4h_R1 4 LEQLCEEFSEEERVR 15 1 Q9H3C7-3;Q9H3C7 Q9H3C7-3 GGNBP2 Gametogenetin-binding protein 2 1 0 LEQLCEEFS(1)EEERVR;LEQLCEEFS(1)EEERVR;LEQLCEEFS(1)EEERVR;LEQLCEEFS(1)EEERVR ;;; 102.39 0.0027058 19907200 2444.88 2361.7 2091.27 1955.3 2657.69 2117.83 2583.46 2536.17 2214.78 1691.25 TRUE FALSE FALSE 2158.294873 2434.461178 2204.330382 2035.045586 2461.637504 2077.435921 2683.104918 2824.877341 2123.485831 1681.19037 1.283789695 1.448058008 1.311172382 1.210478969 1.464222939 1.235693446 1.595955441 1.680284037 1.263084698 1 10.71526738 -1 0.042754347 7.62E-13 3.636725332 0.472786433 0.137903794 244.4608298 0.802382432 18.15256219 62.9169993 0.1 1 3.636725332 VEVTEFEDIK ddPTM_HeLa_CUDC101_4h_R1 4 VEVTEFEDIK 10 0 Q01105;A0A0C4DFV9;Q01105-3;Q01105-4;A0A087X027;P0DME0;Q01105-2 Q01105;Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 0 0 ;;; ;;; 179.8 1.83E-07 144715000 11880.7 10244.1 10216.8 10011.1 10891.2 10155.4 9872.7 10626 10016.6 11385.9 FALSE FALSE TRUE 10488.06236 10559.70858 10769.15111 10419.39593 10087.77787 9961.702665 10253.49335 11835.62089 9603.711508 11318.17616 0.926656575 0.932986767 0.951491739 0.920589659 0.891290057 0.880150876 0.905931592 1.045718031 0.84852112 1 13.46635388 -9.211642569 0.625103379 1.008981761 0.926696837 0 0.064099546 1.09506631 0.647185937 0.050472222 0.009604273 6.14E-10 9.211642569 -0.082284925 LFT(ph)VQFS(ph)SAYSEIERY(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 LFTVQFSSAYSEIERYPR 18 1 K7EMN7 K7EMN7 AP2B1 3 0 LFT(0.997)VQFS(0.99)S(0.014)AY(0.001)S(0.001)EIERY(0.998)PR 68.576 0.017529 16278000 987.13 904.63 867.26 887.95 761.95 800.45 1022.4 1079.7 1121.2 660.18 TRUE FALSE FALSE 871.4201178 932.500578 914.1466989 924.164439 705.7424665 785.1827499 1061.83431 1202.608684 1074.983661 656.25322 1.327871759 1.42094629 1.392978611 1.408243664 1.075411815 1.196463082 1.618025296 1.832537574 1.638062304 1 9.358108786 -1 0.040967295 3.77E-17 3.60294204 0 0.257631677 457.112871 1.439752265 34.57596231 113.8704493 0.1 1 3.60294204 VEYTLGEESEAPGQR ddPTM_HeLa_CUDC101_4h_R1 2 VEYTLGEESEAPGQR 15 0 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;H7C0V6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 0 0 ; ; 165.7 1.87E-10 6420000 1269.4 1147.18 956.67 1004.94 1027.44 1207.95 981.18 910.92 1056.96 1442.52 FALSE FALSE TRUE 1120.602856 1182.523256 1008.390474 1045.925797 951.6477981 1184.910366 1019.024441 1014.615451 1013.391661 1433.939827 0.781485272 0.82466728 0.703230676 0.729407035 0.663659507 0.826332001 0.710646585 0.707571846 0.706718401 1 10.48576877 -9.066954487 0.386792111 1.072185937 0.717627157 0 0.102239794 0.62453236 0.137392283 0.092279108 0.017346786 8.57E-10 9.066954487 -0.354558781 LSEEAECPNPS(ph)TPSK ddPTM_HeLa_CUDC101_4h_R1 1 LSEEAECPNPSTPSK 15 0 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 0 LSEEAECPNPS(0.5)T(0.5)PS(0.001)K 134.81 0.00056716 49670000 4250.7 4038.5 3846.5 3917.1 4852 4291.9 5178.8 5134.2 3434.3 3400.1 TRUE FALSE FALSE 3752.43939 4162.921398 4054.453425 4076.856269 4494.077627 4210.039158 5378.548051 5718.656575 3292.7367 3379.876054 1.110229881 1.231678716 1.199586423 1.206214726 1.329657524 1.245619393 1.591344761 1.691972275 0.974218181 1 11.72275463 -1 0.258775657 1.013370041 5.647057178 0.90640477 0.06705858 9.036662792 0.113687414 0.032910949 18.667103 0.1 1 4.633687137 QVEPPAKKPATPAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLR ddPTM_HeLa_CUDC101_4h_R1 2 QVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLR 39 3 P29692-2;E9PQ49;P29692;P29692-4;P29692-3;E9PRY8;A0A087X1X7;E9PK01;E9PQZ1;E9PI39;E9PL71;H0YE72 P29692-2 EEF1D Elongation factor 1-delta 1 0 QVEPPAKKPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLR;QVEPPAKKPAT(0.002)PAEDDEDDDIDLFGS(0.998)DNEEEDKEAAQLR ; 50.88 0.0033414 89231000 2526.65 3716.1 2777.1 2675.32 4923.5 3542.2 3451.8 5137.7 2863.4 1294.46 TRUE FALSE FALSE 2230.479917 3830.588636 2927.238426 2784.431113 4560.303214 3474.638437 3584.937082 5722.555001 2745.36944 1286.760494 1.733407209 2.976924341 2.27488988 2.163907833 3.544018669 2.70029928 2.786017365 4.447257299 2.133551234 1 10.32952783 -1 0.10788469 4.34E-12 11.6248715 0.542335697 0.616661109 36.21128185 0.274789552 3.098125002 62.84894763 0.1 1 11.6248715 RSSTS(ph)SEPTPTVK ddPTM_HeLa_CUDC101_4h_R1 1 RSSTSSEPTPTVK 13 1 F8WAN1;A0A494C1J1;Q69YQ0-2;Q69YQ0 F8WAN1 SPECC1L-ADORA2A;SPECC1L Cytospin-A 1 0 RS(0.015)S(0.161)T(0.275)S(0.545)S(0.003)EPTPTVK 147.7 0.00023908 17553000 5449 5668.3 5709.4 6438.3 6371.1 5857 6039.6 7271.2 5058.6 5336.4 TRUE FALSE FALSE 4810.27648 5842.933604 6018.067434 6700.881703 5901.116646 5745.287483 6272.549395 8098.924017 4850.082367 5304.658855 0.90680223 1.101472076 1.134487174 1.263206906 1.112440367 1.083064461 1.182460468 1.526756807 0.914306179 1 12.37304426 -1 0.289949903 0.954742556 4.765868195 0.66824155 0.098750052 22.88309399 0.292453917 0.044406954 45.32591841 0.1 1 3.811125639 VFDEHKEEDLFELSHR ddPTM_HeLa_CUDC101_4h_R1 2 VFDEHKEEDLFELSHR 16 1 Q9NSV4-2;Q9NSV4-1;Q9NSV4-7;Q9NSV4-6;Q9NSV4-5;Q9NSV4-4;Q9NSV4 Q9NSV4-2 DIAPH3 Protein diaphanous homolog 3 0 0 ; ; 106.42 0.00082057 22458000 14471.6 12225.9 11433.6 11463.8 14139.2 12149.9 12077.5 11785 12155.6 12356.7 FALSE FALSE TRUE 12775.26099 12602.56549 12051.735 11931.34331 13096.17939 11918.1609 12543.33322 13126.55676 11654.54102 12283.2018 1.040059522 1.026000036 0.981155826 0.971354498 1.06618613 0.970281291 1.021177819 1.068659213 0.94881947 1 13.58439905 SES(ph)FSSEDLIPSR ddPTM_HeLa_CUDC101_4h_R1 1 SESFSSEDLIPSR 13 0 Q9P219-3;Q9P219-2;Q9P219;A0A0A0MR69 Q9P219-3 CCDC88C Protein Daple 1 0 S(0.453)ES(0.51)FS(0.031)S(0.006)EDLIPSR 150.22 0.00033757 4597700 929.71 967.08 913.17 844.17 1037.3 1016.7 1054.1 1114.7 702.36 761.06 TRUE FALSE FALSE 820.7308031 996.8745885 962.5387324 878.5989014 960.7804456 997.3081414 1094.75699 1241.592942 673.4084235 756.5331813 1.084857642 1.31768786 1.27230207 1.161348799 1.269977933 1.318260938 1.447070687 1.641161251 0.890124108 1 9.56325955 -1 0.193926031 0.968474184 3.851682537 0.843679552 0.081812617 13.92429808 0.157316836 0.080193682 12.17471457 0.1 1 2.883208353 SIQGMNILFS(ph)S(ph)WAVVLMVMGITLDK ddPTM_HeLa_CUDC101_4h_R1 1 SIQGMNILFSSWAVVLMVMGITLDK 25 0 Q6GV28 Q6GV28 TMEM225 Transmembrane protein 225 2 0 S(0.054)IQGMNILFS(0.968)S(0.968)WAVVLMVMGIT(0.011)LDK 42.325 0.0028111 0 672.12 526.38 645.08 607.02 667.45 793.27 668.66 864.43 747.41 344.12 TRUE FALSE FALSE 593.3351125 542.5971439 679.9549761 631.7768994 618.2135432 778.1396964 694.4504402 962.8332171 716.6014435 342.0731589 1.734526948 1.586202044 1.987747236 1.846905794 1.80725534 2.274775662 2.030122569 2.814699698 2.094877732 1 8.418161096 -1 0.073037302 3.44E-14 6.464801816 0.30102944 0.372380237 55.5762837 0.301522766 4.564481954 36.89132017 0.1 1 6.464801816 VFDPQNDK(ac)PSK ddPTM_HeLa_CUDC101_4h_R1 1 VFDPQNDKPSK 11 1 O15145 O15145 ARPC3 Actin-related protein 2/3 complex subunit 3 0 1 VFDPQNDK(1)PSK 112.94 0.0044236 1689600 3681 1708.1 1421 1052.5 2991.7 2793.4 2729.2 2375.1 2774.5 1713.4 FALSE TRUE FALSE 3249.51876 1760.724536 1497.823558 1095.425499 2771.008251 2740.120549 2834.466158 2645.471784 2660.133936 1703.208621 1.907880644 1.033769155 0.879412857 0.643154036 1.626934139 1.608799131 1.664191999 1.553228273 1.56183682 1 10.73403944 DAHDVS(ph)PTST(ph)DTEAQLTVER ddPTM_HeLa_CUDC101_4h_R1 2 DAHDVSPTSTDTEAQLTVER 20 0 Q8IVF2;Q8IVF2-3 Q8IVF2 AHNAK2 Protein AHNAK2 2 0 DAHDVS(0.995)PT(0.018)S(0.104)T(0.807)DT(0.076)EAQLTVER;DAHDVS(0.99)PT(0.01)S(0.249)T(0.747)DT(0.003)EAQLTVER ; 117.62 4.62E-05 30880000 3192.75 3110.11 3168.6 3241.68 3812.4 4280.79 4984.2 6283 3262.04 2998.3 TRUE FALSE FALSE 2818.500685 3205.928803 3339.9041 3373.889722 3531.166847 4199.141063 5176.442264 6998.231323 3127.577331 2980.465978 0.945657728 1.075646837 1.120597962 1.13200075 1.184770057 1.408887434 1.736789583 2.348032614 1.049358507 1 11.54132219 -1 0.494641534 0.97591328 44.47733864 0.98923794 0.042816174 5.938678847 0.057808275 0.008775757 269.4360718 0.1 1 43.50142536 up IAS(ph)DEEIQGTKDAVIQDLER ddPTM_HeLa_CUDC101_4h_R1 1 IASDEEIQGTKDAVIQDLER 20 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;A0A3B3ISX8 Q8WX93-3 PALLD Palladin 1 0 IAS(0.996)DEEIQGT(0.004)KDAVIQDLER 56.424 0.018112 32019000 561.45 931.36 843.35 877.52 1215.5 1092.1 1213.5 1879.9 1070.1 693.51 TRUE FALSE FALSE 495.6376821 960.0540977 888.944052 913.3090586 1125.834987 1071.270012 1260.305101 2093.900217 1025.990025 689.3849717 0.71895632 1.392624059 1.28947408 1.324817186 1.633100565 1.553950341 1.828158653 3.03734532 1.488268627 1 9.429166039 -1 0.372761817 0.884109995 27.95859919 0.760386064 0.286739721 14.33844424 0.175595326 0.064718921 282.0996956 0.1 1 27.0744892 up VFEEDALSWEDK ddPTM_HeLa_CUDC101_4h_R1 3 VFEEDALSWEDK 12 0 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ;; ;; 193.96 2.62E-15 10705600 5306.4 3696.4 3699.46 3910.07 4166.7 4644.14 4126.94 3573.7 4729.2 5975.5 FALSE FALSE TRUE 4684.391836 3810.281703 3899.463998 4069.539555 3859.330842 4555.560767 4286.117458 3980.515563 4534.260374 5939.95746 0.788623802 0.64146616 0.656480122 0.685112576 0.64972365 0.766934915 0.721573763 0.670125264 0.763348964 1 12.53623688 -8.333938502 0.698949763 0.985909423 0.685399814 0.375281805 0.080597967 0.163280764 0.171009118 0.02265945 0.012017665 4.64E-09 8.333938502 -0.300509609 VFEEDALSWEDKLNR ddPTM_HeLa_CUDC101_4h_R1 1 VFEEDALSWEDKLNR 15 1 Q14204 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 143.58 0.00044632 10442000 1960.2 1377.9 1228.9 1331.8 1632.8 1824.4 1455 1744.8 1784.4 1614 FALSE FALSE TRUE 1730.428327 1420.351466 1295.338051 1386.116561 1512.351597 1789.60261 1511.119837 1943.420979 1710.846277 1604.399856 1.078551784 0.885285211 0.807366098 0.863947074 0.942627607 1.115434287 0.941859868 1.211307126 1.066346566 1 10.64781803 -4.252249041 23.68233518 0.994969214 1.211307367 0.32579421 0.098270281 630.0199462 1623405.732 0.015136565 0.238786846 5.59E-05 4.252249041 0.216338153 VFGWEEDEDF ddPTM_HeLa_CUDC101_4h_R1 2 VFGWEEDEDF 10 0 Q9BWD3;Q17RB0;A6ZKI3 Q9BWD3 FAM127B;FAM127C;FAM127A Protein FAM127B;Protein FAM127C;Protein FAM127A 0 0 ; ; 140.53 0.0067265 10446700 9444.2 7822 6720.5 7413.2 8753.5 7957.2 7448.6 6587.6 8219.5 7104.1 FALSE FALSE TRUE 8337.165192 8062.986549 7083.830558 7715.542339 8107.771744 7805.429668 7735.894997 7337.505756 7880.688731 7061.844497 1.180593143 1.141767785 1.00311336 1.092567578 1.14810964 1.105296169 1.095449638 1.039035306 1.115953309 1 12.78582934 -9.605306795 1.427737257 1.000404816 1.111494165 0 0.060753854 0.367088834 1.350798012 0.03840827 0.008999766 2.48E-10 9.605306795 0.111089349 VFIGNLNTLVVK ddPTM_HeLa_CUDC101_4h_R1 1 VFIGNLNTLVVK 12 0 P07910-2;P07910;G3V4C1;P07910-3;B2R5W2;G3V2Q1;P07910-4;B4DY08;G3V4W0;G3V576;G3V575;A0A0G2JPF8;G3V555;G3V251;G3V3K6;G3V5X6;P0DMR1;O60812;B7ZW38;B4DSU6;G3V4M8;G3V2H6;A0A0G2JNQ3;B2RXH8 P07910-2;A0A0G2JNQ3 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 0 0 183 5.78E-26 0 117.99 154.66 0 187.99 0 0 149.13 0 0 166.1 FALSE FALSE TRUE 104.1593911 159.4248913 0 195.6570448 0 0 154.8819941 0 0 165.1120298 0.630840716 0.96555588 0 1.184995696 0 0 0.938041851 0 0 1 7.367301426 -7.515426818 0.156244363 1.316251159 1.33E-11 0 0.516518741 4.381913636 0.613231033 2.394338404 2.195269293 3.05E-08 7.515426818 -1.316251159 VFITDDFHDMMPK ddPTM_HeLa_CUDC101_4h_R1 1 VFITDDFHDMMPK 13 0 P14625 P14625 HSP90B1 Endoplasmin 0 0 106.79 0.0050985 8719700 6205.5 4564.7 4532.8 4351.1 4674.1 5226.8 5007.7 5165.3 5266.4 5373.4 FALSE FALSE TRUE 5478.100697 4705.332996 4777.856879 4528.556665 4329.300955 5127.107498 5200.848666 5753.296873 5049.316763 5341.438778 1.025585226 0.880911154 0.894488747 0.847815889 0.810512136 0.959873868 0.973679355 1.077106209 0.945310238 1 12.38301269 -7.269567302 24.61652012 1.012081914 0.916135849 0.138986886 0.073113514 488.4885518 1479452.116 0.012566977 0.014501249 5.38E-08 7.269567302 -0.095946066 VFLALVEEVEDR ddPTM_HeLa_CUDC101_4h_R1 2 VFLALVEEVEDR 12 0 Q9H3U1;A0A1W2PNX8;Q9H3U1-2 Q9H3U1 UNC45A Protein unc-45 homolog A 0 0 ; ; 128.03 0.011127 98343000 2355.1 2316.57 1796.64 1486.9 1992.15 1685.05 1772.97 1652.73 2169.4 2045.68 FALSE FALSE TRUE 2079.038748 2387.940776 1893.771793 1547.542209 1845.193063 1652.910479 1841.354047 1840.870103 2079.976414 2033.512204 1.022388134 1.174293801 0.931281253 0.761019386 0.907392176 0.812835288 0.905504301 0.905266316 1.02284924 1 10.98975793 -6.527478713 24.99994646 1.024558169 0.859704232 0.665208335 0.06435416 63.90477389 347308.8949 0.00984996 0.013960561 2.97E-07 6.527478713 -0.164853937 VFLENVIR ddPTM_HeLa_CUDC101_4h_R1 1 VFLENVIR 8 0 P62805 P62805 HIST1H4A Histone H4 0 0 143.89 0.014574 1558900 1818.3 1359.2 831.94 1374.6 997.64 1698.6 1432.4 1004.2 653.21 720 FALSE FALSE TRUE 1605.16163 1401.075341 876.9171929 1430.66213 924.0460848 1666.202035 1487.648148 1118.514069 626.2844073 715.717408 2.242731017 1.957581757 1.225228258 1.998920403 1.291076722 2.32801664 2.078541239 1.562787291 0.875044257 1 9.48324626 -9.483702591 1.212117388 0.997599494 1.874501942 0.491434108 0.360159184 0.347370306 0.909250896 0.253990776 0.061406284 3.28E-10 9.483702591 0.876902448 Y(ph)NT(ph)EEFIT(ph)VYPTDPPK ddPTM_HeLa_CUDC101_4h_R1 1 YNTEEFITVYPTDPPK 16 0 Q96BN8;H0Y9T0 Q96BN8 OTULIN Ubiquitin thioesterase otulin 3 0 Y(1)NT(0.999)EEFIT(0.949)VY(0.024)PT(0.027)DPPK 48.823 0.003223 0 1462.7 1344.1 1408.9 1428.6 1657 1444.1 1377.6 1590.8 1571.3 1239.7 TRUE FALSE FALSE 1291.244523 1385.510128 1485.069396 1486.864483 1534.766411 1416.556199 1430.734493 1771.890242 1506.530349 1232.326209 1.047810648 1.124304683 1.205094385 1.206551051 1.245422194 1.149497745 1.161003055 1.437841887 1.222509379 1 10.26716849 -1 0.134160177 0.921383278 2.308994143 0.230195299 0.099331276 31.56569765 0.283217091 0.214764222 8.364814541 0.1 1 1.387610864 (ac)AEPPS(ph)PVHCVAAAAPTATVSEKEPFGK ddPTM_HeLa_CUDC101_4h_R1 2 AEPPSPVHCVAAAAPTATVSEKEPFGK 27 1 Q6PCB5 Q6PCB5 RSBN1L Round spermatid basic protein 1-like protein 1 0 AEPPS(0.997)PVHCVAAAAPT(0.003)ATVSEKEPFGK;AEPPS(1)PVHCVAAAAPTATVSEKEPFGK ; 96.341 2.58E-11 339040000 7297.5 6678.5 6656.2 7013.5 7598.8 7225.1 7519.3 8584.4 7065.8 6263.6 TRUE FALSE FALSE 6442.098112 6884.256669 7016.054306 7299.540845 7038.251663 7087.293255 7809.32192 9561.613397 6774.544733 6226.343829 1.034651842 1.105665999 1.12683374 1.172363918 1.130398811 1.138275278 1.254238785 1.535670638 1.088045395 1 12.60416953 -1 0.387487624 1.019845351 8.054517828 0.856637124 0.053818249 14.09437958 0.169459796 0.013609895 75.80016986 0.1 1 7.034672477 (ac)AQES(ph)PKNSAAEIPVTSNGEVDDSREHSFNR ddPTM_HeLa_CUDC101_4h_R1 1 AQESPKNSAAEIPVTSNGEVDDSREHSFNR 30 2 P53367-3;P53367-2;P53367 P53367-3 ARFIP1 Arfaptin-1 1 0 AQES(0.499)PKNS(0.499)AAEIPVT(0.002)S(0.001)NGEVDDSREHSFNR 46.399 8.35E-08 33302000 297.49 255.45 233.85 228.63 346.17 256.98 278.4 290.26 188.06 239.11 TRUE FALSE FALSE 262.6186732 263.3201117 246.4926384 237.9545196 320.6337288 252.0785347 289.1379813 323.3020251 180.3080872 237.6877631 1.104889329 1.107840422 1.037043873 1.001122298 1.348970282 1.060544857 1.216461367 1.360196339 0.758592217 1 7.89292382 -1 0.282924766 1.03200298 3.293756331 0.445851034 0.125713358 29.14519554 0.37180677 0.036987746 33.14605094 0.1 1 2.261753351 (ac)RFKS(ph)HT(ph)VELRR ddPTM_HeLa_CUDC101_4h_R1 1 RFKSHTVELRR 11 3 O14791-2 O14791-2 2 0 RFKS(1)HT(1)VELRR 58.37 0.033218 57960000 1050.5 992.38 857.71 1243 1110.4 1018 1186.3 1392.4 983.01 783.7 TRUE FALSE FALSE 927.3619825 1022.954052 904.080397 1293.694913 1028.488004 998.5833461 1232.055988 1550.905188 942.4899117 779.0385175 1.19039298 1.31309817 1.160507955 1.66063023 1.320201737 1.281815114 1.581508437 1.990793976 1.209811698 1 9.60555085 -1 0.204175775 0.996691569 5.039666127 0.651264501 0.163524674 20.05049844 0.232263522 0.139337507 26.30981199 0.1 1 4.042974558 (ac)S(ph)TVHEILCK ddPTM_HeLa_CUDC101_4h_R1 2 STVHEILCK 9 0 P07355;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YNP5;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 S(0.5)T(0.5)VHEILCK;S(0.5)T(0.5)VHEILCK ; 62.2 0.012261 76293000 28882.9 22507.8 21597.6 20348.6 28328.1 25897.8 28410 26962.4 19597.8 20380.8 TRUE FALSE FALSE 25497.29025 23201.23864 22765.23159 21178.50386 26238.3925 25403.84261 29505.78322 30031.69063 18789.97039 20259.5741 1.258530418 1.145198736 1.123677698 1.045357803 1.295110765 1.2539179 1.456387142 1.482345606 0.927461273 1 14.30631623 -1 0.297144607 1.09091242 4.693034042 0.70101069 0.095937593 24.20394765 0.309611352 0.040210805 46.83376289 0.1 1 3.602121623 (ac)SDDDS(ph)RASTSSSSSSSSNQQTEKETNTPK ddPTM_HeLa_CUDC101_4h_R1 2 SDDDSRASTSSSSSSSSNQQTEKETNTPK 29 2 C9J2P0;P51965-3;P51965 C9J2P0 UBE2E1 Ubiquitin-conjugating enzyme E2 E1 1 0 S(0.061)DDDS(0.248)RAS(0.189)T(0.189)S(0.239)S(0.037)S(0.008)S(0.008)S(0.008)S(0.008)S(0.002)S(0.002)NQQTEKETNTPK;S(0.02)DDDS(0.107)RAS(0.107)T(0.107)S(0.107)S(0.089)S(0.107)S(0.107)S(0.107)S(0.107)S(0.019)S(0.019)NQQTEKETNTPK ; 63.272 0.0055136 7120900 678.91 885.17 869.11 883.83 1367.07 1023.94 907.82 1745.34 953.12 633.76 TRUE FALSE FALSE 599.329199 912.4410385 916.0967155 919.8764076 1266.22397 1004.410051 942.8349215 1944.022451 913.8319902 629.9903673 0.951330735 1.448341254 1.454144004 1.460143607 2.009910048 1.594326045 1.49658625 3.085797103 1.450549147 1 9.299185959 -1 0.278956329 0.934577191 13.64775548 0.605330161 0.358312734 18.38174819 0.234154382 0.138540169 115.2885926 0.1 1 12.71317829 VFSGLVSTGLK ddPTM_HeLa_CUDC101_4h_R1 2 VFSGLVSTGLK 11 0 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 185.61 0.00013343 1312350 1063.97 699.47 609.41 558.23 718.32 888.17 772.88 608.63 813.04 375.65 FALSE FALSE TRUE 939.2530495 721.0198416 642.356548 580.9970323 665.3309647 871.229637 802.6902405 677.913979 779.5261471 373.4156171 2.515302003 1.930877576 1.720218755 1.555899126 1.781743811 2.333136583 2.149589368 1.815440887 2.087556362 1 8.544638455 -9.519890258 1.271457369 0.999427329 2.026915868 0 0.430885582 0.261153974 0.755159002 0.231773296 0.055547876 3.02E-10 9.519890258 1.027488538 VFTTVGSAEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 VFTTVGSAEKR 11 1 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 1 ; VFTTVGSAEK(1)R;VFTTVGSAEK(1)R 169.99 0.00028206 15041000 4897.9 3762.9 3232.4 3430.1 4473.5 4417.3 3625.5 3987.9 3154.4 1518.71 FALSE TRUE FALSE 4323.775587 3878.830489 3407.153321 3569.994304 4143.498817 4333.047362 3765.336749 4441.866416 3024.374297 1509.676645 2.864040853 2.569312111 2.25687622 2.364741029 2.744626692 2.870182417 2.494134596 2.942263451 2.003325882 1 10.56002386 -9.321124073 0.781750678 0.86602852 2.643741807 0.541292652 0.372480836 0.203843729 0.196056393 0.23471218 0.046749302 4.77E-10 9.321124073 1.777713287 ADEGKKET(ph)SPESSLIQDEIAVK ddPTM_HeLa_CUDC101_4h_R1 1 ADEGKKETSPESSLIQDEIAVK 22 2 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 ADEGKKET(0.492)S(0.492)PES(0.007)S(0.009)LIQDEIAVK 63.726 0.026761 31996000 1843 1777.9 1881.8 1723.7 2355.2 1776.8 2015 2600.5 1803 1575.6 TRUE FALSE FALSE 1626.966334 1832.674992 1983.5358 1793.999936 2181.461588 1742.9105 2092.719225 2896.530408 1728.679577 1566.228261 1.038779834 1.170119986 1.266441073 1.145426871 1.392812046 1.112807465 1.336152129 1.849366711 1.103721354 1 10.61307877 -1 0.36410147 1.024150874 10.02026265 0.717844599 0.124716741 20.03162414 0.247643613 0.03369689 126.9611879 0.1 1 8.996111781 ADPSLLGFSVNAS(ph)SER ddPTM_HeLa_CUDC101_4h_R1 1 ADPSLLGFSVNASSER 16 0 I1E4Y6;Q6Y7W6;Q6Y7W6-3;Q6Y7W6-4;Q6Y7W6-5 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 ADPSLLGFSVNAS(0.769)S(0.231)ER 173.77 4.92E-07 7672300 854.38 964.51 863.85 808.32 1068.5 1077.4 853.05 1255.1 846.03 924.04 TRUE FALSE FALSE 754.2308716 994.2254099 910.552344 841.2867835 989.6788838 1056.85039 885.9524243 1397.975511 811.1562853 918.543769 0.821115876 1.08239307 0.991299897 0.915891884 1.077443359 1.150571618 0.964518463 1.521947628 0.883089421 1 9.843204658 -1 0.712354684 0.937979947 72.39202792 0.68652912 0.104038436 128.7221312 0.607689977 0.018252642 14698.86166 0.1 1 71.45404798 VGAEDADGIDMAYR ddPTM_HeLa_CUDC101_4h_R1 2 VGAEDADGIDMAYR 14 0 P49588;P49588-2 P49588 AARS "Alanine--tRNA ligase, cytoplasmic" 0 0 ; ; 152.64 0.00090216 19529900 2323.7 2315.02 2484.18 2613.1 2727.8 2312.7 2260.79 2606.7 2765.1 2142.03 FALSE FALSE TRUE 2051.319409 2386.343022 2618.482285 2719.673513 2526.575629 2268.589101 2347.989428 2903.436191 2651.121408 2129.28911 0.963382285 1.120722879 1.229744835 1.277268314 1.186581764 1.065420891 1.102710485 1.363570676 1.245073482 1 11.05615613 -7.095761265 3.516909201 0.982837358 1.195152254 0.096887943 0.114758061 0.123474414 2.863905556 0.013531727 0.0169087 8.02E-08 7.095761265 0.212314896 VGDDVEFEVSSDR ddPTM_HeLa_CUDC101_4h_R1 1 VGDDVEFEVSSDR 13 0 O75534-2;O75534;O75534-3;O75534-4;E9PLD4 O75534-2 CSDE1 Cold shock domain-containing protein E1 0 0 129 0.0069973 3036400 1036 943.89 1164.2 1048 1191.5 882.37 1055.9 1133.1 1243 1428.5 FALSE FALSE TRUE 914.5616505 972.9701321 1227.140174 1090.74197 1103.605419 865.5402624 1096.626417 1262.087524 1191.763014 1420.003218 0.644056041 0.685188681 0.864181262 0.768126407 0.777185153 0.609534015 0.772270374 0.888792016 0.839267826 1 10.47167848 -9.445204236 1.163336023 1.00078382 0.740215887 0.275357199 0.096058859 0.294865077 0.710411938 0.061946977 0.015246433 3.59E-10 9.445204236 -0.260567933 VGDDVEFEVSSDRR ddPTM_HeLa_CUDC101_4h_R1 2 VGDDVEFEVSSDRR 14 1 O75534-2;O75534;O75534-3;O75534-4;E9PLD4 O75534-2 CSDE1 Cold shock domain-containing protein E1 0 0 ; ; 301.35 4.68E-123 50835000 7598 6866.5 5757.8 5847.6 7499.3 5848 6029.6 6191.6 7217.8 6690.4 FALSE FALSE TRUE 6707.373958 7078.048726 6069.084084 6086.090403 6946.09158 5736.459143 6262.163692 6896.426717 6920.279229 6650.605203 1.008535878 1.064271372 0.912561173 0.915118281 1.044429998 0.862546936 0.941593058 1.036962277 1.040548795 1 12.69926992 -6.750379954 24.99902934 1.008661501 0.950151071 0.284718142 0.055674976 246.3424259 556837.8578 0.008171995 0.011492013 1.78E-07 6.750379954 -0.05851043 AMLPGS(ph)PLFTR ddPTM_HeLa_CUDC101_4h_R1 2 AMLPGSPLFTR 11 0 Q8WUF5 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 AMLPGS(1)PLFTR;AMLPGS(1)PLFTR ; 112.64 0.0062336 169756000 4504.1 4050 3619.8 3580.4 4402.3 3907.1 3646.5 2676.81 4752.2 4510.8 TRUE FALSE FALSE 3976.136226 4174.7757 3815.497337 3726.424188 4077.5511 3832.578577 3787.146726 2981.52723 4556.312305 4483.969561 0.886744696 0.931044612 0.850919545 0.831054747 0.909361904 0.854728946 0.844596886 0.664930301 1.016133638 1 12.13056077 -1 0.106201678 1.060923745 0.173797987 0.715989853 0.049942542 49.62658164 0.371824131 0.332622415 6.463600334 0.1 1 -0.887125758 APDVDVNIAGPDAALKVDVKS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 APDVDVNIAGPDAALKVDVKSPK 23 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 APDVDVNIAGPDAALKVDVKS(1)PK;APDVDVNIAGPDAALKVDVKS(1)PK;APDVDVNIAGPDAALKVDVKS(1)PK ;; 72.028 0.0014843 161853000 5823.34 7184.68 6685.14 6623.38 8041.95 6811.79 7247.86 9737 6317.46 5507.94 TRUE FALSE FALSE 5140.736913 7406.031475 7046.55889 6893.510065 7448.71137 6681.866455 7527.412388 10845.42072 6057.051625 5475.178528 0.938916765 1.352655706 1.287000753 1.259047542 1.360450866 1.220392435 1.374825012 1.980834171 1.106274726 1 12.41869029 -1 0.270945513 0.956914617 6.986131105 0.667145136 0.156967292 18.64815289 0.23661988 0.074517471 53.32961495 0.1 1 6.029216488 VGDK(ac)VLLPEYGGTK ddPTM_HeLa_CUDC101_4h_R1 2 VGDKVLLPEYGGTK 14 1 P61604;B8ZZL8;B8ZZ54 P61604 HSPE1 "10 kDa heat shock protein, mitochondrial" 0 1 ; VGDK(1)VLLPEYGGTK;VGDK(1)VLLPEYGGTK 121.76 0.0065067 568100 541.04 465.65 344.24 559.9 607.57 587.804 445.92 544.63 347.86 545.3 FALSE TRUE FALSE 477.6201114 479.9961246 362.8506557 582.7351421 562.7507716 576.592618 463.1192838 606.6284777 333.5210636 542.0565313 0.881126015 0.885509346 0.669396335 1.07504496 1.038177273 1.063713072 0.854374511 1.119124008 0.61528834 1 9.082299509 AS(ph)SPIKQSHEPVPDTSVEK ddPTM_HeLa_CUDC101_4h_R1 2 ASSPIKQSHEPVPDTSVEK 19 1 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 0 AS(0.525)S(0.449)PIKQS(0.026)HEPVPDTSVEK;AS(0.492)S(0.492)PIKQS(0.016)HEPVPDTSVEK ; 91.475 0.0014602 235380000 11069.1 10385 10538.4 9984.3 12042.9 10673 10879.1 12742.8 11071.9 9984 TRUE FALSE FALSE 9771.596878 10704.94954 11108.13778 10391.50291 11154.51926 10469.43031 11298.71053 14193.38884 10615.5116 9924.614724 0.984581986 1.078626208 1.119251285 1.047043457 1.123924663 1.054895389 1.138453315 1.430119883 1.069614478 1 13.27679538 -1 0.600479188 1.009902708 25.80438389 0.786588918 0.054801658 46.65133647 0.332049549 0.009935376 1522.476089 0.1 1 24.79448118 ASLGSLEGEAEAEAS(ph)SPKGK ddPTM_HeLa_CUDC101_4h_R1 1 ASLGSLEGEAEAEASSPKGK 20 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 ASLGS(0.001)LEGEAEAEAS(0.499)S(0.499)PKGK 50.944 0.032127 218160000 738.58 852.33 793.39 889.75 1071.6 871.03 937.42 1307.1 984.51 831.24 TRUE FALSE FALSE 652.004772 878.589277 836.2830633 926.0378508 992.5502029 854.416554 973.5766034 1455.894981 943.9280811 826.2957475 0.7890695 1.063286698 1.012086854 1.120709932 1.20120454 1.034032375 1.178242302 1.761953858 1.142361054 1 9.690514433 -1 0.533806208 0.926203641 31.45291552 0.693568327 0.131894245 40.09332651 0.35116238 0.025018184 1400.961726 0.1 1 30.52671187 AT(ph)PPPSPLLSELLKK ddPTM_HeLa_CUDC101_4h_R1 1 ATPPPSPLLSELLKK 15 1 H7C128;H7C179;H7C127;Q9H0E9-4;Q9H0E9-2;Q9H0E9-3 H7C128 BRD8 Bromodomain-containing protein 8 1 0 AT(1)PPPSPLLSELLKK 127.49 0.0072928 64698000 7168.5 7201.1 6433.9 6053.4 8004.9 7105.6 6311.1 7295.2 8316.4 5969.1 TRUE FALSE FALSE 6328.219297 7422.957356 6781.736095 6300.283817 7414.394475 6970.072519 6554.521241 8125.65608 7973.594472 5933.595528 1.066506685 1.251004946 1.142938723 1.061798666 1.249561828 1.174679414 1.104645777 1.369432082 1.343804854 1 12.53469087 -1 0.075530173 0.803356452 1.995701636 0 0.136090104 114.7057599 0.641409916 1.670789967 14.45194613 0.1 1 1.192345184 AYS(ph)GSDLPSSSSGGANGTAGGGGGAR ddPTM_HeLa_CUDC101_4h_R1 3 AYSGSDLPSSSSGGANGTAGGGGGAR 26 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 0 AYS(0.497)GS(0.497)DLPS(0.007)SSSGGANGTAGGGGGAR;AYS(0.575)GS(0.421)DLPS(0.003)S(0.001)SSGGANGTAGGGGGAR;AYS(0.724)GS(0.276)DLPSSSSGGANGTAGGGGGAR ;; 383.15 0 73045000 3829.2 3745.2 3341.28 2918.65 3667.5 3770.9 3432.9 3998.5 4033.1 3070.99 TRUE FALSE FALSE 3380.346981 3860.585173 3521.919704 3037.685162 3396.955832 3698.976365 3565.308103 4453.673078 3866.853911 3052.723615 1.10732166 1.264636325 1.153697533 0.995073759 1.112762326 1.211697105 1.167910546 1.458917884 1.266689815 1 11.57588126 -1 0.562357006 1.068398344 18.61560469 0.376552623 0.103052843 67.23999465 0.540978311 0.01664156 1437.575201 0.1 1 17.54720634 DISMEIDS(ph)PENMMR ddPTM_HeLa_CUDC101_4h_R1 3 DISMEIDSPENMMR 14 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 DISMEIDS(1)PENMMR;DISMEIDS(1)PENMMR;DISMEIDS(1)PENMMR ;; 168.67 5.69E-07 24231600 6454.6 6106.15 5259.64 5270.23 6283.7 5920.1 5388.26 4196.91 6160.53 6338.94 TRUE FALSE FALSE 5698.001573 6294.273244 5543.992048 5485.172759 5820.16397 5807.183956 5596.086993 4674.66927 5906.590346 6301.235703 0.904267328 0.998895064 0.879826166 0.870491602 0.923654382 0.921594467 0.888093583 0.741865483 0.937370164 1 12.62141906 -1 0.150512328 1.000101501 0.344318739 0.508096467 0.048697948 42.99442979 0.417989144 0.107729588 6.18752364 0.1 1 -0.655782762 DVMSDETNNEETES(ph)PSQEFVNITK ddPTM_HeLa_CUDC101_4h_R1 3 DVMSDETNNEETESPSQEFVNITK 24 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DVMSDETNNEET(0.036)ES(0.813)PS(0.151)QEFVNITK;DVMSDETNNEET(0.036)ES(0.952)PS(0.012)QEFVNITK;DVMSDETNNEET(0.004)ES(0.995)PSQEFVNITK ;; 216.64 1.11E-28 64363100 7648.5 6498.5 6495 7080.5 7837.7 7297.8 6976.6 7676.4 7595.5 6422.6 TRUE FALSE FALSE 6751.954424 6698.711082 6846.139346 7369.273395 7259.528486 7158.606624 7245.689799 8550.250347 7282.410275 6384.39809 1.057571024 1.049231421 1.072323381 1.154262828 1.137073281 1.121265705 1.134905703 1.339241417 1.140657298 1 12.6403349 -1 0.246286187 1.008008364 2.66277837 0.580349151 0.056383981 14.664936 0.182258207 0.022753155 10.12044568 0.1 1 1.654770006 EAVVDLHADDSRISEDET(ph)ERNGDDGTHDK ddPTM_HeLa_CUDC101_4h_R1 2 EAVVDLHADDSRISEDETERNGDDGTHDK 29 2 Q9UKV3-5 Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 EAVVDLHADDS(0.039)RIS(0.039)EDET(0.809)ERNGDDGT(0.114)HDK;EAVVDLHADDS(0.105)RIS(0.105)EDET(0.773)ERNGDDGT(0.017)HDK ; 55.994 0.0011356 346500000 5898.7 5841.3 5135.4 5193.3 6838.5 5608.2 5756.4 5765.1 5543.5 5196.5 TRUE FALSE FALSE 5207.263328 6021.263529 5413.035258 5405.105221 6334.037479 5501.232929 5978.426276 6421.375681 5314.994584 5165.590987 1.008067294 1.165648528 1.047902413 1.046367247 1.226198028 1.064976484 1.15735572 1.243105716 1.028922847 1 12.3347177 -1 0.16930485 0.966279116 1.997349231 0.499831509 0.060966128 29.88905351 0.313161727 0.088709989 7.838926557 0.1 1 1.031070116 VGEFCHNR ddPTM_HeLa_CUDC101_4h_R1 4 VGEFCHNR 8 0 P22314;P22314-2;Q5JRR9;Q5JRS0;Q5JRS2 P22314 UBA1 Ubiquitin-like modifier-activating enzyme 1 0 0 ;;; ;;; 164.72 0.00043429 33853800 27432 18710.5 18652 23694.5 20422.4 20377.8 19878.2 14583.5 17767.9 7849.9 FALSE FALSE TRUE 24216.46254 19286.94833 19660.38354 24660.86413 18915.88024 19989.12742 20644.90883 16243.62669 17035.49964 7803.208446 3.103398136 2.471668989 2.519525613 3.160349271 2.424115717 2.561654934 2.645694906 2.081659974 2.183140404 1 12.92985172 -9.377157961 1.01871905 0.967237612 2.658530589 0.344972274 0.463905549 0.189168677 0.340283707 0.23814306 0.056782351 4.20E-10 9.377157961 1.691292977 VGEFSGANK(ac)EK ddPTM_HeLa_CUDC101_4h_R1 2 VGEFSGANKEK 11 1 P10599-2;P10599 P10599-2 TXN Thioredoxin 0 1 ; VGEFSGANK(1)EK;VGEFSGANK(1)EK 162.36 0.00021078 4976100 3649.8 1982.18 1978.46 1775.23 6440 4216 5021.9 4089.4 4569.9 2355.2 FALSE TRUE FALSE 3221.975977 2043.248616 2085.421532 1847.631553 5964.93403 4135.586824 5215.596365 4554.920766 4381.526788 2341.191166 1.376212256 0.872738906 0.89075235 0.789184403 2.547820151 1.766445596 2.227753309 1.94555696 1.87149467 1 11.19302702 -5.76581434 24.99999512 1.108194541 2.104066238 0.656938857 0.349569038 39.11350122 223509.3615 0.039973317 0.074314361 1.71E-06 5.76581434 0.995871697 VGEK(ac)LATK ddPTM_HeLa_CUDC101_4h_R1 1 VGEKLATK 8 1 P49916-4;P49916-2;P49916-3;P49916 P49916-4 LIG3 DNA ligase 3 0 1 VGEK(1)LATK 92.051 0.025571 1137800 211.48 181.03 0 68.421 259.24 200.83 214.94 69.177 136.2 0 FALSE TRUE FALSE 186.690635 186.6073197 0 71.21150412 240.1163817 196.9995024 223.2303078 77.05183006 130.5857784 0 0 VGELKDDDFER ddPTM_HeLa_CUDC101_4h_R1 1 VGELKDDDFER 11 1 P36507;A0A1B0GUL7 P36507 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 0 0 86.189 0.037631 27986000 4539.1 4901 4263.7 4279.6 4396.4 4219.6 3726.8 4277.7 4527.3 3876 FALSE FALSE TRUE 4007.033579 5051.994001 4494.208519 4454.140586 4072.086331 4139.11816 3870.543924 4764.656077 4340.682778 3852.94538 1.039992313 1.311203119 1.166434526 1.156035227 1.056876215 1.07427377 1.004567556 1.236626946 1.126588194 1 11.91174602 -7.494850977 22.69163544 1.017643411 1.136694101 0.129887263 0.090334609 101.1878526 81924.95476 0.014849106 0.016120961 3.20E-08 7.494850977 0.119050689 VGEPVALSEEER ddPTM_HeLa_CUDC101_4h_R1 1 VGEPVALSEEER 12 0 E9PPJ0;Q13435;E9PJ04;H0YCG1;E9PIL8;E9PJT3 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 0 0 130.01 0.0092657 7291700 767.55 494.06 594.64 668.9 620.68 490.31 545.88 584.89 647.37 636.8 FALSE FALSE TRUE 677.5789525 509.281403 626.7880371 696.1806332 574.893673 480.9581537 566.9347745 651.4715134 620.6851346 633.0122853 1.070404111 0.804536365 0.990167255 1.099790082 0.908187228 0.759792764 0.895614173 1.029160932 0.980526206 1 9.306089689 -6.378184145 0.683817264 1.027519838 0.900534936 0.036455093 0.103019132 0.959777255 0.887094352 0.023612332 0.054505449 4.19E-07 6.378184145 -0.126984902 EDVEVAES(ph)PLRVLAETPDSFEK ddPTM_HeLa_CUDC101_4h_R1 2 EDVEVAESPLRVLAETPDSFEK 22 1 Q99567;J3KMX1 Q99567 NUP88 Nuclear pore complex protein Nup88 1 0 EDVEVAES(1)PLRVLAETPDSFEK;EDVEVAES(1)PLRVLAETPDSFEK ; 97.256 0.0001228 19963000 2405.57 2196.53 2421.6 1949.16 2966.16 2365.96 2467.39 2871.79 3237.9 1909.86 TRUE FALSE FALSE 2123.592731 2264.202486 2552.519021 2028.65517 2747.352286 2320.833255 2562.558059 3198.702965 3104.432392 1898.500068 1.118563421 1.192627024 1.344492457 1.068556807 1.447117297 1.22245624 1.349780336 1.684857967 1.635202676 1 10.89064434 -1 0.190253627 0.98038713 3.606203256 0 0.225207553 20.8648039 0.233428802 0.11552173 16.20349419 0.1 1 2.625816126 EEATYGVWAERDS(ph)DDERPSFGGK ddPTM_HeLa_CUDC101_4h_R1 3 EEATYGVWAERDSDDERPSFGGK 23 2 Q9UBB9;F6XM96;F6UKU9;F6SQZ1 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 0 EEATYGVWAERDS(1)DDERPSFGGK;EEAT(0.001)Y(0.001)GVWAERDS(0.998)DDERPS(0.001)FGGK;EEAT(0.005)Y(0.015)GVWAERDS(0.981)DDERPSFGGK ;; 80.142 0.00024706 431827000 8000.2 6926.5 7350.5 6302.7 7830.2 7603.5 5898.8 6077.7 6990.9 7696.9 TRUE FALSE FALSE 7062.428684 7139.897255 7747.890264 6559.751349 7252.581746 7458.475906 6126.318692 6769.560801 6702.732143 7651.118496 0.923058333 0.933183463 1.012648055 0.857358483 0.947911309 0.974821643 0.800708902 0.884780546 0.876046051 1 12.90145495 -1 0.105900378 1.027788823 0.552756282 0.045909469 0.06198247 96.2285569 0.719322854 0.346991612 6.691003314 0.1 1 -0.475032541 EEEEKESDS(ph)DSEGPIQYRDEEDEDESYQSALANK ddPTM_HeLa_CUDC101_4h_R1 2 EEEEKESDSDSEGPIQYRDEEDEDESYQSALANK 34 2 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 0 EEEEKES(0.174)DS(0.64)DS(0.174)EGPIQY(0.01)RDEEDEDES(0.001)YQSALANK;EEEEKES(0.208)DS(0.375)DS(0.31)EGPIQY(0.063)RDEEDEDES(0.02)Y(0.019)QS(0.006)ALANK ; 57.919 0.00035774 15439000 2145.9 1659.1 1605.99 1563.07 2026.8 2022.92 1954.13 2272.5 1577.38 1403.46 TRUE FALSE FALSE 1894.360855 1710.214904 1692.814677 1626.818751 1877.287002 1984.336171 2029.501449 2531.192214 1512.359729 1395.112158 1.357855599 1.225861946 1.213389668 1.166084563 1.345617262 1.422348849 1.454722789 1.814328834 1.084041681 1 10.44616539 -1 0.302680077 1.133616084 6.356979386 0.815712519 0.093632843 21.70965469 0.277712711 0.048478303 62.44561149 0.1 1 5.223363302 EGAASPAPET(ph)PQPTS(ph)PETSPK ddPTM_HeLa_CUDC101_4h_R1 1 EGAASPAPETPQPTSPETSPK 21 0 A0A2R8Y4Z8;Q9Y3X0 A0A2R8Y4Z8;Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 2 0 EGAAS(0.449)PAPET(0.551)PQPT(0.302)S(0.673)PET(0.014)S(0.01)PK 69.528 0.0062506 5009900 2448.3 2316 2010.5 1800.8 2556 2212.2 1860 1399.3 2740.8 2559.6 TRUE FALSE FALSE 2161.313985 2387.353215 2119.193711 1874.244408 2367.448972 2170.005971 1931.740823 1558.590656 2627.823064 2544.375385 0.849447765 0.938286555 0.832893497 0.736622598 0.930463715 0.852863922 0.759220056 0.612563172 1.032796921 1 11.31309582 -1 0.104027793 1.073010166 0.009690869 0.642157576 0.072713221 64.3121063 0.473789873 0.534474219 9.822721213 0.1 1 -1.063319297 VGGTSDVEVNEK ddPTM_HeLa_CUDC101_4h_R1 2 VGGTSDVEVNEK 12 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 205.52 6.19E-17 70558000 4692.6 3513.6 2838.4 3163 3663.9 3796.1 2853.4 2740.5 2990.1 3927.3 FALSE FALSE TRUE 4142.540542 3621.849851 2991.85249 3292.000812 3393.621397 3723.695717 2963.456594 3052.467443 2866.846812 3903.940245 1.061117815 0.927742133 0.766367388 0.84325082 0.869281081 0.953830101 0.759093738 0.781893997 0.734347001 1 11.93071526 -7.019650774 4.411079952 1.028117188 0.834050099 0 0.108194594 0.082842366 3.912727159 0.009781161 0.012447342 9.56E-08 7.019650774 -0.194067088 VGGTSDVEVNEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VGGTSDVEVNEKK 13 1 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 ; VGGTSDVEVNEK(1)K;VGGTSDVEVNEK(1)K 289.59 1.94E-81 9351900 6625.5 2325.5 2210.1 2157 6295.7 4934.6 5981.4 4885.5 4256.7 2984.9 FALSE TRUE FALSE 5848.868934 2397.145899 2329.584691 2244.971783 5831.278754 4840.480727 6212.104602 5441.645572 4081.237024 2967.145682 1.971210571 0.80789626 0.785126496 0.756609895 1.965282254 1.631359308 2.093629794 1.833966429 1.375475781 1 11.53486005 -5.719350523 24.99990033 1.315076837 1.878407986 0.437498069 0.387333794 173.1430374 102842.4578 0.07368257 0.147364169 1.91E-06 5.719350523 0.563331149 EKLQEEGGGS(ph)DEEET(ph)GSPSEDGMQSAR ddPTM_HeLa_CUDC101_4h_R1 1 EKLQEEGGGSDEEETGSPSEDGMQSAR 27 1 Q13610-2;Q13610 Q13610-2 PWP1 Periodic tryptophan protein 1 homolog 2 0 EKLQEEGGGS(1)DEEET(0.873)GS(0.119)PS(0.008)EDGMQSAR 116.96 1.51E-08 28456000 2771.9 2393.8 2504.6 2074.3 2634.2 2461.5 2485.8 2593.9 2212.1 2197.9 TRUE FALSE FALSE 2446.982084 2467.550141 2640.006252 2158.89892 2439.880314 2414.550989 2581.678139 2889.179091 2120.916302 2184.826793 1.11998905 1.129403094 1.208336634 0.988132756 1.116738554 1.105145267 1.181639729 1.322383587 0.970748028 1 11.0933032 -1 0.06211434 0.820520344 1.785336007 0.498476042 0.073123627 216.7054504 1.013576622 3.153543232 18.86573067 0.1 1 0.964815663 VGIDTPDIDIHGPEGK ddPTM_HeLa_CUDC101_4h_R1 1 VGIDTPDIDIHGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 0 105.17 0.0023497 6639200 2543.2 2333 1798.3 1950.6 2795.7 2488.4 2408.1 2640.8 2193.8 2683 FALSE FALSE TRUE 2245.089951 2404.876965 1895.521538 2030.153899 2589.466781 2440.937916 2500.981224 2941.417998 2103.370635 2667.041397 0.84179044 0.901702151 0.710720703 0.761200745 0.970913606 0.915223108 0.937736185 1.102876769 0.788653164 1 11.3810245 -3.84791271 1.362865924 0.896516498 1.438377297 0.346209346 0.09156752 3.716880409 2.82137773 0.014978244 3.651523989 0.000141934 3.84791271 0.541860799 VGLLNHRPVAMDAGDSADQSGERK ddPTM_HeLa_CUDC101_4h_R1 1 VGLLNHRPVAMDAGDSADQSGERK 24 2 A0A087WWW8;Q9Y6J0-2;Q9Y6J0;B5MEB3 A0A087WWW8 CABIN1 Calcineurin-binding protein cabin-1 0 0 61.276 0.039744 24759000 376.33 408.92 583.34 314.82 506.62 388.81 401.18 451.43 561.45 380.31 FALSE FALSE TRUE 332.2171679 421.5183405 614.8771249 327.6597204 469.2476519 381.3940971 416.653647 502.8189665 538.3067934 378.0478992 0.878770041 1.114986597 1.626452961 0.866714829 1.241238618 1.008851254 1.102118668 1.330040367 1.423911611 1 8.562425227 -7.116284762 5.757723692 0.943625101 1.185286917 0 0.2443968 0.230396185 10.15298512 0.030484737 0.037505692 7.65E-08 7.116284762 0.241661815 VGLQVVAVK ddPTM_HeLa_CUDC101_4h_R1 2 VGLQVVAVK 9 0 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 0 ; ; 147.52 0.01597 39794000 9905.8 8283.7 6553.4 7607 7724.4 7242.4 6404.7 6048.5 6277.5 5212.8 FALSE FALSE TRUE 8744.65714 8538.910978 6907.696627 7917.24634 7154.586401 7104.263287 6651.731424 6737.036791 6018.738793 5181.794034 1.687573277 1.647867693 1.333070474 1.527896765 1.380716091 1.371004567 1.28367345 1.300135966 1.161516408 1 12.33923596 -9.513518921 1.288064561 1.001963958 1.466671736 0.493698063 0.141805237 0.26991287 0.806982402 0.108413682 0.026594931 3.07E-10 9.513518921 0.464707778 VGLQVVAVK(ac)APGFGDNRK ddPTM_HeLa_CUDC101_4h_R1 1 VGLQVVAVKAPGFGDNRK 18 2 P10809 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 1 VGLQVVAVK(1)APGFGDNRK 121.32 0.0068166 611850 0 0 0 0 0 0 0 0 0 68.421 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 68.01402885 0 0 0 0 0 0 0 0 0 1 6.087760448 -9.157829429 0.677150941 1.083625666 2.50E-23 0 0.307667284 0.066591669 0.049088893 0.041658111 0.0090835 6.95E-10 9.157829429 -1.083625666 EPLPGLTREPVAES(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 EPLPGLTREPVAESPK 16 1 A0A0G2JNN3;C9JMY0;A0A087WUE4;Q96PV6-1;Q96PV6 A0A0G2JNN3 LENG8 Leukocyte receptor cluster member 8 1 0 EPLPGLT(0.005)REPVAES(0.995)PK;EPLPGLTREPVAES(1)PK ; 94.325 0.0035944 59221000 4655.4 5774.1 5195.7 5280 6621.5 6486.3 5388.2 7599.8 5446.2 3795.9 TRUE FALSE FALSE 4109.701069 5951.993177 5476.595258 5495.341222 6133.045137 6362.584634 5596.024679 8464.930513 5221.705331 3773.321818 1.089146717 1.577388165 1.451398932 1.456366959 1.625370279 1.686202487 1.483049936 2.243362989 1.383848392 1 11.88161943 -1 0.153484942 0.817256597 5.28214763 0.550878505 0.216724639 21.61755132 0.212910437 0.352546799 21.70030097 0.1 1 4.464891033 ERLGS(ph)FGSITR ddPTM_HeLa_CUDC101_4h_R1 3 ERLGSFGSITR 11 1 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 0 ERLGS(0.987)FGS(0.013)ITR;ERLGS(0.981)FGS(0.019)ITR;ERLGS(0.99)FGS(0.01)ITR ;; 88.706 0.015011 31016000 3783 3561.96 2910.97 3360.1 5261.3 4336.6 5461.4 5275.3 4009.4 1552.85 TRUE FALSE FALSE 3339.562475 3671.699766 3068.345843 3497.139402 4873.184381 4253.88658 5672.048027 5875.818829 3844.130835 1543.613579 2.163470521 2.378639198 1.987768108 2.265553665 3.156997611 2.755797589 3.674525868 3.806534814 2.490345309 1 10.59209593 -1 0.106123888 0.165291231 11.06505471 0.591261161 0.504738449 23.3554053 0.174884718 1.925673587 37.34573658 0.1 1 10.89976348 ESVAS(ph)GDDRAEEDMDEAIEK ddPTM_HeLa_CUDC101_4h_R1 3 ESVASGDDRAEEDMDEAIEK 20 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ES(0.018)VAS(0.982)GDDRAEEDMDEAIEK;ES(0.011)VAS(0.989)GDDRAEEDMDEAIEK;ES(0.077)VAS(0.923)GDDRAEEDMDEAIEK ;; 70.094 0.0049363 42897900 4292.8 3696.8 3405.4 3604.2 3475.08 3742.3 2978.05 2978.69 4559.5 4198.8 TRUE FALSE FALSE 3789.604491 3810.694026 3589.506225 3751.194855 3218.730272 3670.921863 3092.914386 3317.772029 4371.55548 4173.825351 0.907945152 0.912997959 0.860003935 0.89874265 0.77117033 0.879510174 0.741026307 0.794899583 1.047373839 1 12.02715452 -1 0.08382284 1.135392336 0.11952053 0.795535065 0.041298519 46.2263844 0.283499186 0.503594562 5.447339004 0.1 1 -1.015871805 ETAVPGPLGIEDIS(ph)PNLSPDDKSFSR ddPTM_HeLa_CUDC101_4h_R1 2 ETAVPGPLGIEDISPNLSPDDKSFSR 26 1 Q12888;Q12888-3;Q12888-2;A6NNK5 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 ETAVPGPLGIEDIS(0.999)PNLS(0.001)PDDKSFSR;ETAVPGPLGIEDIS(1)PNLSPDDKSFSR ; 87.671 1.00E-05 26898000 4810.02 4622.03 4496.85 4438.74 5999.5 5378.7 5201.2 9168.5 5316.4 2705.42 TRUE FALSE FALSE 4246.196747 4764.429266 4739.963313 4619.771003 5556.928838 5276.110259 5401.812026 10212.20498 5097.255742 2689.328042 1.578906211 1.771605841 1.762508418 1.717816098 2.066288958 1.961869351 2.008610308 3.797307291 1.89536407 1 11.39303003 -1 0.296405959 1.210010629 18.270946 0.670937211 0.388780753 16.59427531 0.212260336 0.13190579 151.5725643 0.1 1 17.06093537 EVEDKES(ph)EGEEEDEDEDLSKYK ddPTM_HeLa_CUDC101_4h_R1 2 EVEDKESEGEEEDEDEDLSKYK 22 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 0 EVEDKES(1)EGEEEDEDEDLSKYK;EVEDKES(1)EGEEEDEDEDLSKYK ; 70.316 0.0027879 394375000 4146.2 3454.58 3802.11 3390.81 3920.72 3940.92 3792.62 3973.64 3916.35 3319.49 TRUE FALSE FALSE 3660.188721 3561.011515 4007.663567 3529.101888 3631.496297 3865.753517 3938.902624 4425.983116 3754.916395 3299.745526 1.109233634 1.079177618 1.214537162 1.069507288 1.100538289 1.1715308 1.193698906 1.341310438 1.137941204 1 11.68813905 -1 0.172463183 1.002582607 2.119169463 0.505762404 0.063156714 25.85300923 0.273871765 0.079262176 7.51828098 0.1 1 1.116586856 EVS(ph)PGSRDILDGVR ddPTM_HeLa_CUDC101_4h_R1 2 EVSPGSRDILDGVR 14 1 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 EVS(0.982)PGS(0.018)RDILDGVR;EVS(0.814)PGS(0.186)RDILDGVR ; 64.588 0.034014 11972400 3954.5 5333.2 4777.8 4989.7 8521.7 5456.4 5743.5 8525.9 5613.5 3525.1 TRUE FALSE FALSE 3490.959505 5497.509571 5036.10232 5193.201533 7893.071169 5352.328261 5965.028719 9496.453993 5382.109154 3504.132548 0.996240712 1.568864618 1.437189447 1.482022002 2.252503597 1.527433163 1.702283985 2.71007271 1.535931955 1 11.77484163 -1 0.196897249 0.833414892 8.286779908 0.502186779 0.34846737 20.54923822 0.233937159 0.292870596 47.38444366 0.1 1 7.453365017 EYGS(ph)TSSIDR ddPTM_HeLa_CUDC101_4h_R1 2 EYGSTSSIDR 10 0 Q9P2F8 Q9P2F8 SIPA1L2 Signal-induced proliferation-associated 1-like protein 2 1 0 EYGS(0.946)T(0.044)S(0.009)SIDR;EYGS(0.743)T(0.129)S(0.127)S(0.001)IDR ; 133.91 0.0018781 13301000 4138.7 3546.6 4027.7 3762.4 3837.9 4096.3 3892.1 4982.8 3838 3355.3 TRUE FALSE FALSE 3653.56786 3655.866542 4245.449645 3915.846934 3554.785763 4018.169902 4042.219601 5550.021811 3679.796016 3335.342526 1.095410091 1.09609928 1.272867662 1.174046415 1.065793314 1.204724813 1.211935377 1.664003552 1.103273798 1 11.70361921 -1 0.731088278 1.071463417 89.39601593 0.792339674 0.080142977 107.7092084 0.47151786 0.014720073 15645.03602 0.1 1 88.32455251 GFENVIHDKLPLQES(ph)EEEEREER ddPTM_HeLa_CUDC101_4h_R1 2 GFENVIHDKLPLQESEEEEREER 23 2 P23497;P23497-2;P23497-3;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;C9JBL0 P23497 SP100 Nuclear autoantigen Sp-100 1 0 GFENVIHDKLPLQES(1)EEEEREER;GFENVIHDKLPLQES(1)EEEEREER ; 55.972 0.0060009 65517000 4521.7 4086.8 4363 4586.9 5102.9 5084.2 5172.4 5987.4 4562.6 3711.6 TRUE FALSE FALSE 3991.67318 4212.709464 4598.876977 4773.973608 4726.469233 4987.227356 5371.901201 6668.981414 4374.527697 3689.523238 1.081894034 1.141803207 1.246469172 1.293926966 1.281051488 1.351726777 1.455987902 1.807545578 1.185662053 1 11.84921869 -1 0.262558916 1.00025199 6.062743447 0.872061463 0.076812541 7.37236862 0.093028058 0.02781605 16.96748029 0.1 1 5.062491457 GGGPVTLQDYRLPDS(ph)DDDEDEETAIQR ddPTM_HeLa_CUDC101_4h_R1 3 GGGPVTLQDYRLPDSDDDEDEETAIQR 27 1 Q96K21-3 Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 0 GGGPVT(0.003)LQDY(0.085)RLPDS(0.911)DDDEDEET(0.002)AIQR;GGGPVT(0.003)LQDY(0.494)RLPDS(0.504)DDDEDEETAIQR;GGGPVT(0.029)LQDY(0.089)RLPDS(0.877)DDDEDEET(0.005)AIQR ;; 82.381 7.86E-06 42136400 4353.67 4024.27 3464.33 3758.62 4432.2 4030.38 4069.96 4129.11 4266.36 3536.8 TRUE FALSE FALSE 3843.339402 4148.252989 3651.622159 3911.91277 4105.245436 3953.507217 4226.939721 4599.151192 4090.498835 3515.762956 1.093173644 1.179901216 1.038642879 1.112678192 1.167668437 1.124509037 1.202282342 1.308151673 1.163474013 1 11.77962209 -1 0.156249492 0.987126215 2.013921428 0.383952419 0.064773922 25.36204839 0.252721604 0.091224224 5.986319016 0.1 1 1.026795212 VGRPTASK(ac)ASK ddPTM_HeLa_CUDC101_4h_R1 1 VGRPTASKASK 11 2 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 1 VGRPTASK(1)ASK 97.957 0.019499 26253000 3837.7 3683.9 2364 6825.6 4708 5168.6 4681.1 4248.4 551.65 61.658 FALSE TRUE FALSE 3387.850624 3797.396593 2491.804991 7103.977471 4360.70022 5070.017566 4861.651595 4732.020683 528.9107535 61.29125547 55.27461621 61.95658032 40.65514683 115.9052367 71.14718382 82.72008017 79.32047659 77.20547812 8.629465156 1 5.937609352 -8.18375768 0.435473213 1.82E-13 83.92651324 0.756036518 16.34565191 0.377011529 0.166955747 13.30051986 6.500897119 6.55E-09 8.18375768 83.92651324 GKGGVTGSPEASIS(ph)GSKGDLK ddPTM_HeLa_CUDC101_4h_R1 1 GKGGVTGSPEASISGSKGDLK 21 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 GKGGVTGSPEAS(0.151)IS(0.472)GS(0.377)KGDLK 79.993 0.0013714 55097000 1847.9 1504.7 1396.3 1708.9 2207.3 1896.9 1947 2032.5 1456.8 1404.5 TRUE FALSE FALSE 1631.291963 1551.058023 1471.788202 1778.596328 2044.471877 1860.719793 2022.096442 2263.871584 1396.750087 1396.145972 1.168425076 1.110956916 1.054179313 1.27393293 1.464368281 1.332754476 1.448341709 1.621514964 1.000432703 1 10.44723407 -1 0.209407765 1.001506469 4.103546087 0.864581933 0.075397202 13.94304196 0.163377424 0.068884669 14.51654646 0.1 1 3.102039617 GLAEVQQDGEAEEGAT(ph)SDGEKKR ddPTM_HeLa_CUDC101_4h_R1 1 GLAEVQQDGEAEEGATSDGEKKR 23 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 GLAEVQQDGEAEEGAT(0.5)S(0.5)DGEKKR 64.843 0.0050498 108460000 2480.3 2892.8 2161.5 2122.6 3171.7 2489.8 2448.4 3590.2 2520.9 2018.7 TRUE FALSE FALSE 2189.562994 2981.923739 2278.357228 2209.168803 2937.73001 2442.311213 2542.835608 3998.893856 2416.987435 2006.692683 1.091130203 1.485989242 1.135379248 1.100900413 1.463966075 1.217082832 1.267177396 1.992778411 1.204463173 1 10.97060398 -1 0.44016797 1.072147046 17.17838522 0.559483872 0.182816338 35.47034585 0.390497448 0.039367846 514.7687633 0.1 1 16.10623817 GLVAAYS(ph)GDSDNEEELVERLESEEEK ddPTM_HeLa_CUDC101_4h_R1 1 GLVAAYSGDSDNEEELVERLESEEEK 26 1 P52756 P52756 RBM5 RNA-binding protein 5 1 0 GLVAAY(0.019)S(0.568)GDS(0.414)DNEEELVERLESEEEK 74.364 0.0001375 8165700 737.87 1133.5 696.39 934.68 1256.7 890.32 863.17 1278.4 1080.7 947.28 TRUE FALSE FALSE 651.3779971 1168.421791 734.0389499 972.8002904 1163.995745 873.3386294 896.462756 1423.927889 1036.153089 941.6455364 0.691744369 1.240829746 0.779527881 1.033085437 1.236129414 0.927460064 0.95201721 1.512169743 1.100364254 1 9.879040278 -1 0.603950692 0.893358955 34.77313618 0.272963358 0.193694034 124.9336175 0.878863143 0.034733487 5608.765907 0.1 1 33.87977723 GLYDGPVCEVSVT(ph)PK ddPTM_HeLa_CUDC101_4h_R1 4 GLYDGPVCEVSVTPK 15 0 A0A1C7CYX9;Q16555-2;Q16555 A0A1C7CYX9 DPYSL2 Dihydropyrimidinase-related protein 2 1 0 GLYDGPVCEVS(0.363)VT(0.637)PK;GLYDGPVCEVS(0.006)VT(0.994)PK;GLYDGPVCEVS(0.037)VT(0.963)PK;GLYDGPVCEVS(0.238)VT(0.762)PK ;;; 229.68 1.05E-32 1329510000 20439.7 17636.8 17976.5 16438.1 19857.5 20705 21248.2 24880.3 18830.1 12844.4 TRUE FALSE FALSE 18043.78935 18180.1689 18948.36397 17108.51677 18392.65179 20310.08662 22067.75019 27712.57278 18053.91531 12768.00094 1.413203949 1.423885305 1.484050954 1.339952656 1.440527133 1.590702156 1.728363767 2.170470767 1.413997022 1 13.64024504 -1 0.154897377 0.975960467 4.663013006 0.682858897 0.1602796 21.89613959 0.216953951 0.288645304 18.35849715 0.1 1 3.687052539 GRAEGEWEDQEALDYFS(ph)DKES(ph)GKQK ddPTM_HeLa_CUDC101_4h_R1 1 GRAEGEWEDQEALDYFSDKESGKQK 25 3 E9PK91;Q9NYF8-3;E9PK09;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-2;Q9NYF8 E9PK91;Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 2 0 GRAEGEWEDQEALDY(0.635)FS(0.683)DKES(0.683)GKQK 51.469 0.019651 9572700 1641.4 1479.6 1508.4 1434.3 1551.5 1575.1 1516.7 1536.2 1580.7 1464.4 TRUE FALSE FALSE 1448.99758 1525.184722 1589.948667 1492.796954 1437.048936 1545.057592 1575.199627 1711.074798 1515.542877 1455.689684 0.995402795 1.047740284 1.092230497 1.025491195 0.987194559 1.061392142 1.082098503 1.175439256 1.041116726 1 10.50748713 -1 0.489638119 1.004829395 5.894021075 0.601929829 0.033848582 39.09063122 0.385299746 0.006927671 196.8409088 0.1 1 4.88919168 GSNEEQVNGS(ph)PLER ddPTM_HeLa_CUDC101_4h_R1 2 GSNEEQVNGSPLER 14 0 Q9UHF7;Q9UHF7-3;Q9UHF7-2;E5RFF3;H0YAV4 Q9UHF7 TRPS1 Zinc finger transcription factor Trps1 1 0 GSNEEQVNGS(1)PLER;GSNEEQVNGS(1)PLER ; 164.53 2.28E-05 25239000 1770.79 1920.85 1670.7 1564.31 1865.06 1755.44 1665.34 1974.63 1904.46 1552.03 TRUE FALSE FALSE 1563.220681 1980.029112 1761.023096 1628.109323 1727.47824 1721.957907 1729.572722 2199.413897 1825.957353 1542.798457 1.01323713 1.283401019 1.141447276 1.055296184 1.119704413 1.116126283 1.121061999 1.425600271 1.183535895 1 10.59133389 -1 0.223180692 0.992541516 2.648496351 0.171281328 0.110695213 32.55561508 0.391632001 0.070335185 19.69736049 0.1 1 1.655954835 GSS(ph)GEGLPFAEEGNLTIK ddPTM_HeLa_CUDC101_4h_R1 2 GSSGEGLPFAEEGNLTIK 18 0 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 GS(0.271)S(0.729)GEGLPFAEEGNLTIK;GS(0.382)S(0.618)GEGLPFAEEGNLTIK ; 267.39 2.03E-71 6980700 3222.3 3114.8 2898.7 3037.4 2795.77 3061.7 2545.65 2227.81 3583.9 3328.2 TRUE FALSE FALSE 2844.586879 3210.763296 3055.41249 3161.278301 2589.531617 3003.303174 2643.836573 2481.414885 3436.170125 3308.403718 0.859806457 0.97048715 0.923530727 0.955529787 0.782713308 0.907780135 0.799127555 0.750033882 1.038618747 1 11.69191958 -1 0.175476686 0.978620025 0.124398414 0.602725696 0.058418314 37.02649541 0.396223617 0.08302679 8.422763848 0.1 1 -0.854221611 GVAGPGPIGREPDPDS(ph)DWEPEER ddPTM_HeLa_CUDC101_4h_R1 3 GVAGPGPIGREPDPDSDWEPEER 23 1 Q9NPE2-3;Q9NPE2 Q9NPE2-3 NGRN Neugrin 1 0 GVAGPGPIGREPDPDS(1)DWEPEER;GVAGPGPIGREPDPDS(1)DWEPEER;GVAGPGPIGREPDPDS(1)DWEPEER ;; 93.446 8.99E-05 24756000 4749.6 5166.6 4429.85 4161.31 5625.4 5217.8 5292 5746.9 4519.1 4691.47 TRUE FALSE FALSE 4192.859088 5325.776822 4669.341091 4331.026209 5210.425449 5118.279158 5496.114213 6401.103866 4332.820785 4663.564928 0.899067377 1.141996928 1.001238572 0.928694309 1.117262337 1.09750357 1.178522074 1.372577409 0.929079117 1 12.18721749 -1 0.438516834 0.960797419 9.679453814 0.753059744 0.068507995 26.16219146 0.288955673 0.016059669 204.5506262 0.1 1 8.718656395 GYYSPYS(ph)VSGSGSTAGSR ddPTM_HeLa_CUDC101_4h_R1 2 GYYSPYSVSGSGSTAGSR 18 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9 Q15149;Q15149-3;Q15149-4;Q15149-9 PLEC Plectin 1 0 GYYSPYS(0.525)VS(0.343)GS(0.021)GS(0.104)T(0.006)AGS(0.001)R;GYYS(0.392)PYS(0.529)VS(0.044)GS(0.003)GS(0.028)T(0.004)AGSR ; 158.14 3.39E-05 1551832000 4220.7 3469.2 3863.8 4086.5 4425 4468.3 3985.8 5061.7 3852.9 3855.7 TRUE FALSE FALSE 3725.955944 3576.08194 4072.688715 4253.165133 4098.576566 4383.074622 4139.533641 5637.903468 3694.081831 3832.766125 0.972132351 0.933028999 1.062597764 1.109685536 1.069352116 1.143579984 1.080038152 1.470975083 0.963816135 1 11.90417025 -1 0.565799887 0.991845372 22.39073822 0.822524641 0.061242507 37.58366451 0.299170146 0.010847322 987.0399142 0.1 1 21.39889285 HIKEEPLSEEEPCTST(ph)AIASPEKK ddPTM_HeLa_CUDC101_4h_R1 1 HIKEEPLSEEEPCTSTAIASPEKK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 HIKEEPLSEEEPCT(0.114)S(0.114)T(0.658)AIAS(0.114)PEKK 75.533 0.00015422 12341000 2853.9 2777.4 2788.4 2786.7 2928.8 3126.1 3064.4 3949.4 2666.1 2651.2 TRUE FALSE FALSE 2519.370168 2862.968402 2939.149338 2900.353671 2712.748259 3066.474851 3182.594935 4398.983732 2556.20223 2635.430544 0.955961512 1.086338021 1.115244469 1.100523661 1.029337793 1.163557453 1.207618596 1.669170808 0.96993724 1 11.36382296 -1 0.651168324 0.999395438 59.14445417 0.910585085 0.058580382 42.40932709 0.252754855 0.010921059 3563.04097 0.1 1 58.14505873 HIKEEPLSEEEPCTSTAIAS(ph)PEKK ddPTM_HeLa_CUDC101_4h_R1 1 HIKEEPLSEEEPCTSTAIASPEKK 24 2 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 0 HIKEEPLSEEEPCT(0.071)S(0.071)T(0.054)AIAS(0.804)PEKK 45.357 0.027681 15830000 5559.8 5461.9 5193.8 5390 5893.8 5746.2 5688.1 7345.1 5111.5 4871.2 TRUE FALSE FALSE 4908.088672 5630.174665 5474.592538 5609.827498 5459.026116 5636.600809 5907.491922 8181.236494 4900.801807 4842.225886 1.013601758 1.162724499 1.130594208 1.158522471 1.127379483 1.164051604 1.219995114 1.6895611 1.0120969 1 12.24145467 -1 0.576976724 1.030261881 33.86438076 0.86682923 0.06868754 35.58714046 0.27347997 0.013626649 1467.630483 0.1 1 32.83411888 HLLTDLPLPPELPGGDLS(ph)PPDSPEPK ddPTM_HeLa_CUDC101_4h_R1 2 HLLTDLPLPPELPGGDLSPPDSPEPK 26 0 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2 Q9NYV4;Q9NYV4-2 CDK12 Cyclin-dependent kinase 12 1 0 HLLTDLPLPPELPGGDLS(0.875)PPDS(0.125)PEPK;HLLTDLPLPPELPGGDLS(0.863)PPDS(0.137)PEPK ; 113.71 4.83E-08 209170000 4824.7 4526.7 4235.74 4300.5 5216.8 4779.7 4394.1 5035.5 4148.2 4105.6 TRUE FALSE FALSE 4259.15598 4666.162262 4464.736917 4475.892978 4831.967057 4688.535186 4563.581909 5608.720966 3977.20944 4081.179709 1.043609026 1.143336632 1.093981945 1.096715484 1.183963315 1.148818607 1.118201656 1.374289143 0.974524457 1 11.99477052 -1 0.200713628 0.98931917 2.396312224 0.730265494 0.055135249 19.1122483 0.219618013 0.048621947 8.532557547 0.1 1 1.406993054 IEDVGSDEEDDS(ph)GKDK ddPTM_HeLa_CUDC101_4h_R1 1 IEDVGSDEEDDSGKDK 16 1 P08238;Q58FF8 P08238;Q58FF8 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 0 IEDVGS(0.291)DEEDDS(0.709)GKDK 77.776 0.011073 19262000 2452.7 1826.4 1910.7 2137.6 2012.8 2151.7 1885.3 1446.1 2729.4 2253.6 TRUE FALSE FALSE 2165.198224 1882.669219 2013.998222 2224.780567 1864.319754 2110.659907 1958.016653 1610.718179 2616.892977 2240.195487 0.966522001 0.840403987 0.89902789 0.99311894 0.832212976 0.942176663 0.874038299 0.719007867 1.168153847 1 11.12940892 -1 0.194367349 1.00727862 1.09E-15 0.499638997 0.081532453 30.29211421 0.342633295 0.060555058 9.280784229 0.1 1 -1.00727862 IKDNGDLVLSS(ph)PSNVTLPQVK ddPTM_HeLa_CUDC101_4h_R1 1 IKDNGDLVLSSPSNVTLPQVK 21 1 A0A494C0P1;P04150-7;P04150-5;P04150-2;P04150-6;P04150-10;P04150;P04150-3;P04150-9;P04150-8;P04150-13;P04150-12;P04150-11 A0A494C0P1 NR3C1 Glucocorticoid receptor 1 0 IKDNGDLVLS(0.168)S(0.542)PS(0.28)NVT(0.009)LPQVK 98.292 0.00016422 58108000 6382.1 5141.8 4722.3 4951.9 6091.3 5778.5 5155.9 3565.1 5460.8 5986.1 TRUE FALSE FALSE 5633.999913 5300.212763 4977.601822 5153.859886 5641.956935 5668.28474 5354.76479 3970.936573 5235.703513 5950.494411 0.946812067 0.890718048 0.836502226 0.866122969 0.94814927 0.952573744 0.899885694 0.667328847 0.879877057 1 12.53879383 -1 0.158620402 1.014024249 0.187686867 0.230447027 0.076388176 46.73106062 0.470195902 0.130515088 9.045451809 0.1 1 -0.826337381 IRTPS(ph)GEFLER ddPTM_HeLa_CUDC101_4h_R1 1 IRTPSGEFLER 11 1 B3KT28;B1ANM7;Q9UNN5-2;Q9UNN5 B3KT28 FAF1 FAS-associated factor 1 1 0 IRT(0.397)PS(0.603)GEFLER 68.033 0.036229 8778600 1149.5 1135.4 1021.9 1176.1 1258.9 1100.3 947.3 1330.7 1402.6 1014.3 TRUE FALSE FALSE 1014.757353 1170.380328 1077.147005 1224.066442 1166.033455 1079.313611 983.8376783 1482.181509 1344.784234 1008.266898 1.006437238 1.160784243 1.068315351 1.214030177 1.15647301 1.070464192 0.975771078 1.470028929 1.333758191 1 9.97766187 -1 0.19979335 0.980003367 2.290220409 0 0.15746118 44.67446971 0.512221205 0.10727173 18.4605511 0.1 1 1.310217042 ISS(ph)LLEEQFQQGK ddPTM_HeLa_CUDC101_4h_R1 1 ISSLLEEQFQQGK 13 0 P62241;Q5JR95 P62241 RPS8 40S ribosomal protein S8 1 0 IS(0.286)S(0.714)LLEEQFQQGK 102.33 0.0080968 15510000 1890.4 1480.6 1800.8 1514.1 1834.8 1979.5 1525.3 1891.5 1555.3 1530.9 TRUE FALSE FALSE 1668.810178 1526.215531 1898.156695 1575.851542 1699.450459 1941.744336 1584.131332 2106.820714 1491.189876 1521.794139 1.096607048 1.002905381 1.247315026 1.035522153 1.116741362 1.275957297 1.040962961 1.384432139 0.979889354 1 10.5715575 -1 0.180476231 1.001238668 2.128696889 0.443155495 0.097894534 40.59433816 0.441397906 0.111531266 12.63803636 0.1 1 1.127458221 IT(ph)PHTSPAPR ddPTM_HeLa_CUDC101_4h_R1 1 ITPHTSPAPR 10 0 A0A0C4DFZ9;Q58A45-2;Q58A45-4;Q58A45-3;Q58A45 A0A0C4DFZ9 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit PAN3 1 0 IT(0.863)PHT(0.069)S(0.069)PAPR 96.665 0.028017 38355000 550.09 428.25 583.14 526.64 456.28 576.7 544.57 583.82 366.05 470.09 TRUE FALSE FALSE 485.6092841 441.4438749 614.6663123 548.1186555 422.6211334 565.7004083 565.5742473 650.2797089 350.9612641 467.2938838 1.039194607 0.944681474 1.315374187 1.17296347 0.904401166 1.210588086 1.210318104 1.391586176 0.751050412 1 8.868186344 -1 0.34680937 1.016072833 5.043587139 0.431468659 0.142788856 35.36167338 0.444040269 0.033528946 94.08145482 0.1 1 4.027514306 VGVGK(ac)VIR ddPTM_HeLa_CUDC101_4h_R1 1 VGVGKVIR 8 1 Q00688 Q00688 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 0 1 VGVGK(1)VIR 86.472 0.03545 2367400 747.46 1063.2 686.55 793.25 1444.9 880.11 566.77 555.95 1090.9 740.79 FALSE TRUE FALSE 659.8438719 1095.955932 723.6669697 825.6021637 1338.312606 863.3233681 588.6305088 619.2371008 1045.93264 736.3837481 0.896059797 1.488294567 0.982730773 1.121157502 1.817411926 1.17238243 0.799352933 0.840916305 1.420363558 1 9.524313977 KAALLAQYADVT(ph)DEEDEADEKDDSGATTMNIGSDK ddPTM_HeLa_CUDC101_4h_R1 2 KAALLAQYADVTDEEDEADEKDDSGATTMNIGSDK 35 2 Q96MW1 Q96MW1 CCDC43 Coiled-coil domain-containing protein 43 1 0 KAALLAQYADVT(1)DEEDEADEKDDSGATTMNIGSDK;KAALLAQYADVT(1)DEEDEADEKDDSGATTMNIGSDK ; 112.57 2.34E-15 380910000 7228.8 6421.7 6921.8 6871.7 7890.9 7244.7 6699 7905.7 6701.8 6356 TRUE FALSE FALSE 6381.451022 6619.544965 7296.013445 7151.957628 7308.804028 7106.519418 6957.382674 8805.652932 6425.548967 6318.194229 1.010011847 1.047695706 1.15476245 1.131962293 1.156786854 1.124770648 1.101166318 1.393697726 1.016991364 1 12.62529657 -1 0.233929721 0.985306386 2.775026303 0.680306708 0.061923181 19.64319032 0.240318316 0.03930638 13.68082089 0.1 1 1.789719916 KAPAGQEEPGTPPSS(ph)PLSAEQLDR ddPTM_HeLa_CUDC101_4h_R1 1 KAPAGQEEPGTPPSSPLSAEQLDR 24 1 P13051;Q68DM5;F5GYA2;P13051-2 P13051 UNG;DKFZp781L1143 Uracil-DNA glycosylase 1 0 KAPAGQEEPGTPPS(0.221)S(0.767)PLS(0.012)AEQLDR 148.9 6.46E-09 15566000 1281.9 1230.3 1077.7 1085 1215.5 1168.1 1228.5 1263.6 1217.4 1022 TRUE FALSE FALSE 1131.637625 1268.204085 1135.963722 1129.25099 1125.834987 1145.820439 1275.883657 1407.443116 1167.218257 1015.921099 1.113903065 1.248329311 1.118161365 1.111553832 1.108191363 1.127863611 1.255888531 1.385386245 1.148926091 1 9.988572644 -1 0.158470064 0.993094519 2.170018618 0.42658016 0.077010148 34.08583722 0.342755273 0.135896078 9.385851359 0.1 1 1.176924099 KGAGDGS(ph)DEEVDGKADGAEAKPAE ddPTM_HeLa_CUDC101_4h_R1 5 KGAGDGSDEEVDGKADGAEAKPAE 24 3 P35579;P35579-2 P35579 MYH9 Myosin-9 1 0 KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE;KGAGDGS(1)DEEVDGKADGAEAKPAE ;;;; 69.054 0.0036075 24191557000 10857.09 11434.16 10072.46 9980.32 11240.03 10117.51 9859.13 11555.73 10796.93 9664.81 TRUE FALSE FALSE 9584.438368 11786.43292 10617.00766 10387.36059 10410.87538 9924.535354 10239.39995 12871.18759 10351.87598 9607.32328 0.997617972 1.226817561 1.105095285 1.08119195 1.08363954 1.033017737 1.065791131 1.339726708 1.077498453 1 13.22991882 -1 0.202702942 0.986096946 2.050988731 0.203349 0.089626472 43.75325423 0.505122512 0.081827937 14.97783889 0.1 1 1.064891785 VHDYDMR ddPTM_HeLa_CUDC101_4h_R1 2 VHDYDMR 7 0 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 0 0 ; ; 124.59 0.010552 17135700 3350.3 2541.8 2682.33 3016.7 2791.1 2772.9 2617.3 1549.83 2590 3349.3 FALSE FALSE TRUE 2957.582913 2620.109845 2827.344873 3139.734065 2585.206114 2720.011552 2718.250138 1726.256383 2483.239104 3329.378215 0.888328908 0.786966718 0.849211081 0.943039169 0.776483159 0.816972833 0.816443781 0.518492124 0.745856717 1 11.70103705 -2.387866119 0.197046681 0.995843037 6.17E-25 0.274421858 0.105063945 15.07770524 0.277311869 0.083361693 4.157290839 0.004093868 2.387866119 -0.995843037 KLGDVSPT(ph)QIDVSQFGSFKEDTK ddPTM_HeLa_CUDC101_4h_R1 1 KLGDVSPTQIDVSQFGSFKEDTK 23 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 KLGDVS(0.177)PT(0.823)QIDVSQFGSFKEDTK 106.44 3.51E-05 442820000 783.24 739.16 576.64 822.22 866.09 798.14 695.57 930.73 790.01 715.61 TRUE FALSE FALSE 691.4297945 761.9326435 607.8149026 855.7536855 802.2002662 782.9168093 722.3983679 1036.680541 757.4454534 711.3535199 0.971991809 1.071102655 0.854448436 1.202993535 1.127709702 1.100601582 1.015526525 1.457335224 1.064794694 1 9.474422901 -1 0.836686061 1.003811498 134.0224426 0.564797633 0.100736252 296.4120774 0.824012016 0.015030769 75016.203 0.1 1 133.0186311 KLSSS(ph)DAPAQDTGSSAAAVETDASR ddPTM_HeLa_CUDC101_4h_R1 1 KLSSSDAPAQDTGSSAAAVETDASR 25 1 H0YHT2;A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-3;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;H0YIM6 H0YHT2 KIF21A Kinesin-like protein KIF21A 1 0 KLS(0.29)S(0.29)S(0.42)DAPAQDTGSSAAAVETDASR 152.1 4.44E-11 152510000 1769.7 1446.1 1480.4 1741.7 1503.6 1369 1822.3 1802 1315.5 1286.2 TRUE FALSE FALSE 1562.258449 1490.652627 1560.434902 1812.734054 1392.682424 1342.888606 1892.586721 2007.132396 1261.274533 1278.549625 1.221898953 1.165893445 1.220472691 1.417805002 1.089267398 1.050321849 1.480260667 1.569850991 0.986488524 1 10.32029244 -1 0.116751278 0.932675591 2.488426742 0.499811742 0.138047408 71.93046355 0.581197282 0.717634684 18.21497868 0.1 1 1.55575115 VHFEESSKLEDLLR ddPTM_HeLa_CUDC101_4h_R1 2 VHFEESSKLEDLLR 14 1 P12956;P12956-2;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 0 0 ; ; 94.402 0.0060761 36965000 15368 11860.1 11186.4 11450.8 14210.8 12936.1 12109.6 12487.5 13267 12163.4 FALSE FALSE TRUE 13566.58634 12225.49562 11791.17062 11917.81312 13162.4976 12689.36545 12576.67133 13909.02652 12720.12864 12091.05156 1.122035273 1.011119303 0.97519811 0.985672178 1.088614794 1.049484024 1.040163568 1.15035706 1.052028319 1 13.5616521 -4.259430679 24.01301861 1.045957986 1.150357121 0.356207974 0.044336693 121.0915405 1447392.322 0.007811019 0.067980764 5.50E-05 4.259430679 0.104399135 DGVCGPPPSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 DGVCGPPPSKK 11 1 Q08J23;Q08J23-2;Q08J23-3;A0A140T9Z1 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 1 ; DGVCGPPPSK(1)K;DGVCGPPPSK(1)K 173.64 0.00019759 20899000 5743 6053.9 6369.7 6529.3 7446.9 7354.6 6821.7 8400.9 4420.5 3812.6 FALSE TRUE FALSE 5069.814246 6240.413483 6714.065249 6795.593076 6897.557023 7214.323259 7084.815254 9357.224498 4238.285119 3789.922486 1.337709218 1.64658077 1.771557406 1.793069146 1.819973113 1.903554304 1.869382627 2.468975166 1.118303906 1 11.88795263 -1 0.097788073 0.422224577 5.788082994 0.892093773 0.133221712 24.95809944 0.174682007 1.153833848 18.04432046 0.1 1 5.365858417 INPDEREEMK(ac)VSAK ddPTM_HeLa_CUDC101_4h_R1 1 INPDEREEMKVSAK 14 2 P48507-2;P48507 P48507-2 GCLM Glutamate--cysteine ligase regulatory subunit 0 1 INPDEREEMK(1)VSAK 134.4 0.0038564 1268300 590.92 691.07 757.33 673.35 630.99 838.76 834.18 1124.2 651.91 593.09 FALSE TRUE FALSE 521.6532534 712.3610476 798.2735506 700.8121235 584.4431248 822.7620505 866.354602 1252.174384 625.0379939 589.5622743 0.884814507 1.208288045 1.354010569 1.188699064 0.991317033 1.395547318 1.469487855 2.123905206 1.060172981 1 9.2035004 -1 0.459345992 0.975147307 27.54133545 0.807373206 0.148517721 23.70414341 0.25074739 0.033818674 598.878587 0.1 1 26.56618815 KRNEDEDS(ph)PNKLYTLVTYVPVTTFK ddPTM_HeLa_CUDC101_4h_R1 1 KRNEDEDSPNKLYTLVTYVPVTTFK 25 3 P62899;H7C2W9;C9JU56;B7Z4E3;B7Z4C8;P62899-3;P62899-2 P62899 RPL31 60S ribosomal protein L31 1 0 KRNEDEDS(0.951)PNKLY(0.035)T(0.011)LVT(0.003)Y(0.001)VPVTTFK 67.136 0.00085507 50638000 4864.1 4245.1 4727.6 4863.7 4980.2 4928.8 4415 5401.9 5024.4 4459.9 TRUE FALSE FALSE 4293.937571 4375.886499 4983.188356 5062.062709 4612.820568 4834.791352 4585.288029 6016.830461 4817.292105 4433.372316 0.96854883 0.987033388 1.124017565 1.141808616 1.040476693 1.090544851 1.034266401 1.357167869 1.086597687 1 12.11418881 -1 0.433238678 0.994180389 6.77621202 0.496501923 0.075682064 36.77398094 0.410333789 0.016035353 187.7563409 0.1 1 5.782031631 LANQDEGPEDEEDEVPKKQNS(ph)PVAPTAQPK ddPTM_HeLa_CUDC101_4h_R1 2 LANQDEGPEDEEDEVPKKQNSPVAPTAQPK 30 2 Q6P1N0;Q6P1N0-2 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 0 LANQDEGPEDEEDEVPKKQNS(0.993)PVAPT(0.007)AQPK;LANQDEGPEDEEDEVPKKQNS(0.999)PVAPT(0.001)AQPK ; 95.652 2.91E-09 31485000 3895.9 3941.7 4375.6 3963.5 5119.7 4540.8 4038.2 5239.8 4202.5 4436.6 TRUE FALSE FALSE 3439.228508 4063.139105 4612.158171 4125.148662 4742.029931 4454.191805 4193.954727 5836.277652 4029.271171 4410.210906 0.779833115 0.921302675 1.045790841 0.935363127 1.075238811 1.009972516 0.950964663 1.32335568 0.913623239 1 12.10663193 -1 0.566490806 0.910550028 18.59345826 0.571467906 0.088052978 83.39695839 0.662460248 0.019713973 1812.492761 0.1 1 17.68290823 LEVPAERS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 LEVPAERSPR 10 1 Q9UJF2-2 Q9UJF2-2 RASAL2 Ras GTPase-activating protein nGAP 1 0 LEVPAERS(1)PR;LEVPAERS(1)PR;LEVPAERS(1)PR ;; 124.12 0.0021517 63190000 6692.5 6263.5 5541 5508.6 7102.4 6475 6044.8 6802.4 7032.1 5833.7 TRUE FALSE FALSE 5908.015295 6456.471011 5840.563221 5733.264518 6578.470102 6351.500163 6277.949961 7576.75772 6742.233862 5799.000893 1.018798825 1.113376447 1.007167153 0.98866419 1.134414397 1.095274907 1.082591653 1.306562606 1.162654393 1 12.50158865 -1 0.523324607 1.015129184 10.7820756 0.465765227 0.067414901 39.54623476 0.356764919 0.009045942 431.6237733 0.1 1 9.766946412 VHIEIGPDGR ddPTM_HeLa_CUDC101_4h_R1 6 VHIEIGPDGR 10 0 P31943;G8JLB6;E9PCY7;H0YB39;H0YBD7;H0YBG7;P52597;P55795 P31943;P52597;P55795 HNRNPH1;HNRNPF;HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2" 0 0 ;;;;; ;;;;; 157.78 7.77E-05 184892500 26261.8 23180.2 19856.3 21897.6 22693.9 21082.4 19894.6 21511.2 21227.7 20838.5 FALSE FALSE TRUE 23183.43161 23894.35449 20929.79164 22790.67878 21019.81621 20680.28835 20661.94139 23959.94806 20352.68522 20714.55168 1.119185777 1.153505751 1.010390761 1.100225539 1.014736719 0.998345929 0.997460226 1.156672296 0.982530809 1 14.33835698 -5.741912893 24.98920194 1.064616812 1.035532271 0.014464747 0.066287688 759.6090703 972111.7963 0.00997377 0.019921332 1.81E-06 5.741912893 -0.029084541 VHLENMGSHDIVDGNHR ddPTM_HeLa_CUDC101_4h_R1 4 VHLENMGSHDIVDGNHR 17 0 A0A087WUZ3;Q01082;Q01082-2;F8W6C1;P11277-3;P11277;P11277-2;Q01082-3;O15020-2;O15020;A4QPE4 A0A087WUZ3;Q01082-3;O15020-2 SPTBN1;SPTB;SPTBN2 "Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2" 0 0 ;;; ;;; 144.4 5.33E-05 70325000 5361.9 4762.9 5676.8 5064.6 7352.7 6091.9 6006.9 5548.4 6394.4 7638 FALSE FALSE TRUE 4733.38621 4909.639304 5983.704979 5271.156279 6810.30597 5975.707157 6238.588145 6180.007429 6130.820126 7592.568836 0.623423549 0.646637444 0.788100195 0.694252024 0.896969934 0.78704682 0.821670278 0.813954745 0.807476397 1 12.89037237 -9.517965395 1.296165411 0.99884404 0.745622268 0.157491424 0.098373503 0.286793801 0.868797451 0.063050582 0.015455827 3.03E-10 9.517965395 -0.253221772 VHLVGIDIFTGK ddPTM_HeLa_CUDC101_4h_R1 4 VHLVGIDIFTGK 12 0 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like 0 0 ;;; ;;; 159.09 1.12E-05 41374090 19051.91 17563.64 17342.86 18557.3 18226.38 18568.9 17223.08 17902.2 18274.5 18514.02 FALSE FALSE TRUE 16818.67399 18104.75493 18280.46747 19314.14691 16881.85626 18214.72917 17887.37996 19940.11408 17521.21738 18403.89779 0.913864779 0.983745679 0.993293251 1.049459584 0.917297871 0.989721274 0.971934325 1.083472334 0.952038399 1 14.16772373 -7.012492709 22.77179696 0.958771362 0.996707848 0.160180571 0.045883221 317.1080152 578029.0018 0.008234903 0.010373778 9.72E-08 7.012492709 0.037936486 VHLVGIDIFTGKK ddPTM_HeLa_CUDC101_4h_R1 1 VHLVGIDIFTGKK 13 1 I3L397;I3L504;P63241;P63241-2;F8WCJ1;C9J7B5;C9J4W5;Q9GZV4;Q6IS14 I3L397 EIF5A;EIF5A2;EIF5AL1 Eukaryotic translation initiation factor 5A;Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like 0 0 79.07 0.025722 1791700 2585 2103.4 2734.9 2485.1 2403.7 2486 2456.1 2546.5 2560.4 2559.6 FALSE FALSE TRUE 2281.990219 2168.203261 2882.756967 2586.45312 2226.38384 2438.583692 2550.8326 2836.383267 2454.859228 2544.375385 0.896876393 0.852155414 1.132992004 1.01653755 0.875021765 0.95842135 1.002537839 1.114766038 0.964818023 1 11.31309582 -6.783088499 24.99983379 0.94250606 1.006970461 0.220069516 0.078376463 397.3570063 458856.1103 0.013767735 0.01810391 1.65E-07 6.783088499 0.064464401 LGGPEGPGS(ph)PLLAT ddPTM_HeLa_CUDC101_4h_R1 2 LGGPEGPGSPLLAT 14 0 Q9C086 Q9C086 INO80B INO80 complex subunit B 1 0 LGGPEGPGS(1)PLLAT;LGGPEGPGS(0.987)PLLAT(0.013) ; 81.494 0.023682 27258000 12111 11305.6 9423.3 9670 11217.4 11086.1 9753.5 8697.4 12267.8 11410.9 TRUE FALSE FALSE 10691.36694 11653.91214 9932.752102 10064.3844 10389.91475 10874.65111 10129.69576 9687.47686 11762.11609 11343.02746 0.942549683 1.027407557 0.875670286 0.887274974 0.915973693 0.958707995 0.893032817 0.854046849 1.036946806 1 13.46951813 -1 0.0700108 1.093963503 0.54113438 0.538436256 0.041922823 154.1582227 0.804887601 1.135443702 8.447664169 0.1 1 -0.552829122 LLSS(ph)SLTADCSLR ddPTM_HeLa_CUDC101_4h_R1 1 LLSSSLTADCSLR 13 0 Q147X3;Q147X3-2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 0 LLS(0.115)S(0.52)S(0.363)LT(0.001)ADCSLR 91.307 0.016574 7156100 1042 803.79 945.75 696.95 1012.5 1163.8 1144.6 1121.1 809.71 644.87 TRUE FALSE FALSE 919.8583396 828.5538172 996.8801057 725.3746335 937.8098922 1141.602454 1188.747605 1248.721492 776.3334111 641.0342846 1.434959661 1.292526526 1.555111996 1.13156917 1.462963705 1.780875815 1.85442126 1.947979262 1.211063791 1 9.324257709 -1 0.157308241 0.985176395 4.679635334 0.749595923 0.151392477 25.08532422 0.251058696 0.319498024 21.48442225 0.1 1 3.694458939 LRLT(ph)PQHDQIQTQPLGK ddPTM_HeLa_CUDC101_4h_R1 1 LRLTPQHDQIQTQPLGK 17 1 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 1 0 LRLT(0.981)PQHDQIQT(0.019)QPLGK 68.676 0.031831 14747000 2830.2 2728 2649.5 2260.1 2933.6 2588.8 2044.8 2049 3382.3 2962.2 TRUE FALSE FALSE 2498.448246 2812.046447 2792.739984 2352.276647 2717.194173 2539.422953 2123.668621 2282.249878 3242.880162 2944.580703 0.848490328 0.954990449 0.94843384 0.798849441 0.92277796 0.862405622 0.721212572 0.775067865 1.101304562 1 11.5238465 -1 0.090321019 1.073338524 0.237723596 0.580335178 0.070323448 92.55120753 0.605568458 0.748961932 9.629413053 0.1 1 -0.835614927 VHSAVITVPAYFNDSQR ddPTM_HeLa_CUDC101_4h_R1 3 VHSAVITVPAYFNDSQR 17 0 P54652 P54652 HSPA2 Heat shock-related 70 kDa protein 2 0 0 ;; ;; 127.18 0.00025519 257679610 3914.21 4078.59 3321.6 3433.48 3981.94 3964.16 3553.61 3881.46 3449.54 3242.61 FALSE FALSE TRUE 3455.392237 4204.246524 3501.175743 3573.512155 3688.200219 3888.550253 3690.673928 4323.309717 3307.348501 3223.322812 1.071996955 1.304320656 1.086200777 1.108642343 1.144223038 1.206379404 1.144990478 1.341258685 1.026068034 1 11.65433296 -1 0.070494588 0.785928438 1.986842407 0.487619692 0.076065015 128.9817749 0.677666732 2.048065764 15.44108155 0.1 1 1.200913969 LS(ph)LGLSR ddPTM_HeLa_CUDC101_4h_R1 2 LSLGLSR 7 0 Q9NR12-2;Q9NR12;D6RAN1;H0Y8W6;D6RF83;H7BYK4;D6RH06;Q9NR12-3;Q9NR12-5;Q9NR12-6;Q9NR12-4 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 1 0 LS(1)LGLSR;LS(1)LGLSR ; 120.31 0.011899 19665100 6634.6 5991.6 5513.9 5350.7 6101.8 5932.4 5098.8 4408.7 5840 6356.8 TRUE FALSE FALSE 5856.902245 6176.194094 5811.998113 5568.924674 5651.68237 5819.249354 5295.462424 4910.568587 5599.272728 6318.989471 0.92687324 0.977402182 0.91976702 0.881299882 0.894396548 0.920914551 0.838023619 0.777112956 0.886102557 1 12.62547815 -1 0.196982516 0.993722679 0.083560446 0.560043159 0.040351968 17.1096633 0.194821764 0.029740234 4.820537897 0.1 1 -0.910162233 LYSILQGDS(ph)PTKWR ddPTM_HeLa_CUDC101_4h_R1 2 LYSILQGDSPTKWR 14 1 O15042-2;O15042;O15042-3 O15042-2 U2SURP U2 snRNP-associated SURP motif-containing protein 1 0 LYS(0.024)ILQGDS(0.933)PT(0.042)KWR;LYSILQGDS(1)PTKWR ; 179.55 2.94E-07 29906000 4582.4 4048.8 4215.9 3887.9 4615 4428 3972.8 4585.7 4478.2 3883.6 TRUE FALSE FALSE 4045.258018 4173.538729 4443.824306 4046.465367 4274.560644 4343.543278 4126.032227 5107.717552 4293.606701 3860.500174 1.047858525 1.081087564 1.151100662 1.048171269 1.107255654 1.125124487 1.068781774 1.323071447 1.112189226 1 11.91457206 -1 0.23646564 1.008496722 2.291851362 0.416424865 0.063696518 24.07947091 0.295637953 0.033321189 12.20109155 0.1 1 1.283354641 VHVGDEDFVHLR ddPTM_HeLa_CUDC101_4h_R1 1 VHVGDEDFVHLR 12 0 P04080 P04080 CSTB Cystatin-B 0 0 178.53 1.53E-07 109180000 5431.3 3948.1 3342.7 4120.3 2999.9 3318.3 2585.3 2664.2 4005.5 3014.9 FALSE FALSE TRUE 4794.651247 4069.736281 3523.416473 4288.343643 2778.603354 3255.008956 2685.015887 2967.481759 3840.391595 2996.967241 1.599834387 1.35795154 1.175660656 1.430894401 0.92713838 1.086100946 0.89591099 0.99016156 1.28142595 1 11.5492876 -5.752008437 24.99341123 1.29633648 0.977139056 0.527122487 0.154192729 191.6179539 507812.3631 0.033613449 0.066516397 1.77E-06 5.752008437 -0.319197424 MDAPASGSACSGLNKQEPGGSHGS(ph)ETEDTGR ddPTM_HeLa_CUDC101_4h_R1 1 MDAPASGSACSGLNKQEPGGSHGSETEDTGR 31 1 Q9UKJ3;Q9UKJ3-2 Q9UKJ3 GPATCH8 G patch domain-containing protein 8 1 0 MDAPAS(0.001)GS(0.005)ACS(0.012)GLNKQEPGGS(0.337)HGS(0.566)ET(0.073)EDT(0.006)GR 52.342 0.0072479 8491100 743.08 586.25 670.82 643.14 786.22 576.84 727.81 982.4 732.5 443.88 TRUE FALSE FALSE 655.9772888 604.3116676 707.0865583 669.3700291 728.222117 565.8377381 755.8818755 1094.232445 702.30604 441.239782 1.486668509 1.369576571 1.602499564 1.517021031 1.650399956 1.28238151 1.713086413 2.479904328 1.591665277 1 8.785419059 -1 0.123978292 0.872035613 4.509948826 0.390569364 0.282975079 47.26562517 0.399970079 0.986068269 29.95373777 0.1 1 3.637913213 MDS(ph)DEDEKEGEEEKVAK ddPTM_HeLa_CUDC101_4h_R1 2 MDSDEDEKEGEEEKVAK 17 2 Q96ST2-3;Q96ST2;Q96ST2-2 Q96ST2-3 IWS1 Protein IWS1 homolog 1 0 MDS(1)DEDEKEGEEEKVAK;MDS(1)DEDEKEGEEEKVAK ; 79.565 0.011045 125407000 6285.5 6714.9 6833.6 6065.8 7960.7 6510.8 7010.4 8502.3 7328.5 6542.2 TRUE FALSE FALSE 5548.723218 6921.77811 7203.045087 6313.189543 7373.455021 6386.617338 7280.793476 9470.167465 7026.416128 6503.286703 0.853218299 1.064350755 1.107600728 0.970769063 1.133804391 0.982059938 1.119555974 1.456212512 1.080440775 1 12.66695331 -1 0.604509478 0.954573148 31.64827048 0.615378102 0.093285632 68.29033352 0.479503242 0.017075355 2780.498699 0.1 1 30.69369733 VIAINVDDPDAANYNDINDVKR ddPTM_HeLa_CUDC101_4h_R1 2 VIAINVDDPDAANYNDINDVKR 22 1 Q15181 Q15181 PPA1 Inorganic pyrophosphatase 0 0 ; ; 197.6 6.10E-19 13320400 2955.8 2921.5 3090.7 2748.7 3466.8 3222.9 2851.7 3106.4 2743.8 2920.7 FALSE FALSE TRUE 2609.325605 3011.507952 3257.792591 2860.803867 3211.061071 3161.428552 2961.691024 3460.020019 2630.699403 2903.327547 0.898736213 1.037260834 1.122089237 0.985353468 1.105993388 1.088898342 1.020102271 1.19174291 0.906098041 1 11.50349163 -7.059173687 5.600157269 0.95249537 1.079409494 0.55869465 0.059117604 0.133298035 8.771940718 0.009982062 0.012372268 8.73E-08 7.059173687 0.126914123 VIDFDENTALDDAEEESFR ddPTM_HeLa_CUDC101_4h_R1 1 VIDFDENTALDDAEEESFR 19 0 Q14257;Q14257-2;H0YL43 Q14257 RCN2 Reticulocalbin-2 0 0 271.41 9.77E-86 24880000 2499.1 2470.3 2418.8 2514.3 2694.1 2743.1 2220.5 2276.1 2562.4 2701.6 FALSE FALSE TRUE 2206.159286 2546.407015 2549.567644 2616.844022 2495.36161 2690.779938 2306.145429 2535.202024 2456.776787 2685.530763 0.821498423 0.948195064 0.949371975 0.974423402 0.929187498 1.001954614 0.85872985 0.944022708 0.914819827 1 11.39099153 VIDFDENTALDDAEEESFRK ddPTM_HeLa_CUDC101_4h_R1 2 VIDFDENTALDDAEEESFRK 20 1 Q14257;Q14257-2;H0YL43 Q14257 RCN2 Reticulocalbin-2 0 0 ; ; 204.71 3.69E-18 22594600 2657.1 2564.4 2390.2 2226.74 2513.9 2300.9 2218.65 2428.82 2753.8 2655.2 FALSE FALSE TRUE 2345.638766 2643.406124 2519.421442 2317.556082 2328.454605 2257.014166 2304.224074 2705.307051 2640.287198 2639.406752 0.888699237 1.001515254 0.954540803 0.878059465 0.882188622 0.855121767 0.873008327 1.024967845 1.000333577 1 11.36599798 -6.272593435 23.89567549 0.951506132 0.897242044 0.234377772 0.055190988 569.6309389 1220336.168 0.009240182 0.014206249 5.34E-07 6.272593435 -0.054264087 VIDRFDEGEDGEGDFLVVGSIR ddPTM_HeLa_CUDC101_4h_R1 1 VIDRFDEGEDGEGDFLVVGSIR 22 1 Q9NY61 Q9NY61 AATF Protein AATF 0 0 111.57 1.78E-05 2564800 582.63 549.79 542.51 557.18 431.77 454.08 536.75 587.61 551.58 688.64 FALSE FALSE TRUE 514.3349946 566.7283782 571.8397316 579.9042087 399.9191873 445.4191805 557.4526273 654.5011472 528.8436389 684.5439387 0.751354246 0.827891894 0.835358695 0.847139498 0.58421259 0.650680191 0.814341631 0.956112691 0.772548859 1 9.418999336 -9.401906927 0.642100332 1.039107355 0.77301402 0 0.121942652 0.962678031 0.542952536 0.151404623 0.022632206 3.96E-10 9.401906927 -0.266093334 VIEETEER ddPTM_HeLa_CUDC101_4h_R1 2 VIEETEER 8 0 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 0 0 ; ; 150.4 0.015176 63742000 3372.6 2343.9 2642.9 2993.4 2393.6 2357.7 2502.8 2119.25 2487.4 2419.1 FALSE FALSE TRUE 2977.268941 2416.112781 2785.783168 3115.483791 2217.028897 2312.730801 2599.333834 2360.496854 2384.868319 2404.711086 1.238098397 1.004741399 1.158468967 1.295575094 0.921952292 0.961749964 1.080933943 0.981613495 0.991748378 1 11.23164786 -5.722701061 24.99999903 1.12136147 0.991530952 0.27261309 0.102128742 187.271228 120855.7052 0.016457007 0.032913569 1.89E-06 5.722701061 -0.129830518 MS(ph)LPDVDLDLKGPK ddPTM_HeLa_CUDC101_4h_R1 2 MSLPDVDLDLKGPK 14 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 MS(1)LPDVDLDLKGPK;MS(1)LPDVDLDLKGPK ; 71.531 0.024302 42810000 4744.1 4754.7 4565.5 4102.8 5090.2 4848.8 5314.7 5438.6 4929.7 4414 TRUE FALSE FALSE 4188.00379 4901.186671 4812.32474 4270.129918 4714.706087 4756.317219 5519.689759 6057.70824 4726.495679 4387.745332 0.954477408 1.117017124 1.096764825 0.973194567 1.074516803 1.084000292 1.257978607 1.380597045 1.07720374 1 12.09926408 -1 0.454147908 0.986799979 10.74316208 0.758244376 0.060748396 21.758771 0.232762403 0.0121965 199.0114578 0.1 1 9.756362098 VIESTQDLGNDLAGVMALQR ddPTM_HeLa_CUDC101_4h_R1 1 VIESTQDLGNDLAGVMALQR 20 0 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 101.45 0.00083208 0 315.23 250.15 278.18 220.63 309.76 268.16 315.38 330.46 264.87 312.42 FALSE FALSE TRUE 278.2792173 257.856825 293.2192522 229.628245 286.9096219 263.0452948 327.5443122 368.0782306 253.9519465 310.5617119 0.896051273 0.830291743 0.944157766 0.739396507 0.923840934 0.84699847 1.054683497 1.185201577 0.817718143 1 8.278736166 -4.523932312 3.811340277 0.918381402 1.168601221 0.580517523 0.079943209 0.130253656 4.044747682 0.011639895 0.063220268 2.99E-05 4.523932312 0.250219819 NITSSS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 2 NITSSSPER 9 0 A6NF31;O75665-3;O75665 A6NF31 OFD1 Oral-facial-digital syndrome 1 protein 1 0 NITSSS(1)PER;NIT(0.001)S(0.001)S(0.003)S(0.995)PER ; 137.4 0.002213 242340000 17358 15258.8 14387.9 15064.4 15465.8 14929.7 14058.8 12196.2 16217.2 16234.3 TRUE FALSE FALSE 15323.32155 15728.90554 15165.7534 15678.79135 14324.91875 14644.94085 14601.05263 13584.56611 15548.72015 16137.73766 0.94953344 0.974666082 0.939769484 0.971560678 0.887665858 0.907496525 0.904776923 0.841788756 0.963500614 1 13.97815072 -1 0.189094248 0.998836484 0.35500169 0.773040154 0.021712445 16.55087436 0.184575325 0.022856604 3.126475489 0.1 1 -0.643834794 NKPLEQS(ph)VEDLSKGPPSSVPK ddPTM_HeLa_CUDC101_4h_R1 2 NKPLEQSVEDLSKGPPSSVPK 21 2 O95466;O95466-2;O95466-3 O95466 FMNL1 Formin-like protein 1 1 0 NKPLEQS(0.999)VEDLS(0.001)KGPPSSVPK;NKPLEQS(0.983)VEDLS(0.015)KGPPS(0.001)S(0.001)VPK ; 95.365 0.00032618 37046000 3001.52 2644.79 2702.66 2822.31 3817.5 3270.3 3299.3 3395.6 2621.33 2087.05 TRUE FALSE FALSE 2649.686376 2726.272845 2848.773975 2937.416001 3535.890631 3207.924476 3426.555106 3782.141379 2513.277668 2074.636134 1.277181252 1.314096868 1.373143911 1.415870452 1.704342546 1.546258847 1.651641486 1.82303842 1.211430586 1 11.01864261 -1 0.101415033 0.690652561 3.97897836 0.857520991 0.08974177 18.22055656 0.131450369 0.487771253 8.380527357 0.1 1 3.288325799 VIFLEDDDVAAVVDGR ddPTM_HeLa_CUDC101_4h_R1 2 VIFLEDDDVAAVVDGR 16 0 A0A6I8PRN4;A0A6I8PTT9;Q06210-2;Q06210 A0A6I8PRN4 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 0 0 ; ; 152 0.00084506 14214500 2488.3 2222 8329.5 2460.7 2828 2417.8 2454.2 6844.7 18287.7 6085.9 FALSE FALSE TRUE 2196.625246 2290.457186 8779.817965 2561.057982 2619.384074 2371.684493 2548.859316 7623.872981 17533.87327 6049.700796 0.36309651 0.378606689 1.451281354 0.423336305 0.432977458 0.392033354 0.421319897 1.260206618 2.898304207 1 12.56264808 NLEELEEKST(ph)TPPPAEPVSLPQEPPK ddPTM_HeLa_CUDC101_4h_R1 1 NLEELEEKSTTPPPAEPVSLPQEPPK 26 1 Q9UN86-2;Q9UN86 Q9UN86-2 G3BP2 Ras GTPase-activating protein-binding protein 2 1 0 NLEELEEKS(0.148)T(0.416)T(0.416)PPPAEPVS(0.02)LPQEPPK 61.522 0.0044271 19537000 1143.6 1264.7 1216.3 1134.2 2057.4 1475.1 1511.3 2381.6 1432.8 1004.4 TRUE FALSE FALSE 1009.548942 1303.663908 1282.056857 1180.457578 1905.629701 1446.964925 1569.591347 2652.711717 1373.739378 998.4257841 1.011140695 1.305719392 1.284078274 1.182318803 1.908634303 1.449246352 1.572066119 2.656894242 1.37590535 1 9.963511382 -1 0.32848251 0.987457797 15.64338101 0.69090567 0.260554654 16.15948697 0.205281491 0.071312959 145.5355841 0.1 1 14.65592322 NNS(ph)GEEFDCAFR ddPTM_HeLa_CUDC101_4h_R1 2 NNSGEEFDCAFR 12 0 Q08J23;Q08J23-2;Q08J23-3 Q08J23 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 0 NNS(1)GEEFDCAFR;NNS(1)GEEFDCAFR ; 206.49 2.87E-23 39069000 2472.64 2321.35 2219.07 2105.37 2343.09 2012.44 2435.4 4954.2 2122.84 701.41 TRUE FALSE FALSE 2182.800887 2392.868042 2339.039637 2191.236089 2170.244919 1974.05606 2529.334194 5518.166102 2035.335637 697.2379821 3.130639672 3.431924398 3.354722055 3.142737695 3.112631518 2.831251467 3.627648319 7.914322289 2.919140507 1 9.445507352 -1 0.139707117 0.78076395 16.97877906 0.47740895 1.186717741 43.10476288 0.398125448 3.144781649 139.9402878 0.1 1 16.19801511 NQGGYGGSSSSS(ph)SYGSGR ddPTM_HeLa_CUDC101_4h_R1 2 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-3;P09651-2;P09651;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 NQGGYGGSSSS(0.065)S(0.87)S(0.065)YGSGR;NQGGYGGS(0.009)S(0.004)S(0.002)S(0.02)S(0.961)S(0.004)YGSGR ; 195.48 8.80E-25 0 669.17 523.06 940.45 788.63 623.56 754.41 680.15 996.24 733.43 610.88 TRUE FALSE FALSE 590.730907 539.1748586 991.2935717 820.7937401 577.5612211 740.0208862 706.3836133 1109.647935 703.197705 607.2464586 0.972802556 0.887901199 1.632440268 1.351664927 0.951115009 1.218649983 1.163256868 1.827343608 1.158010384 1 9.246138361 -1 0.364232414 1.002495022 9.105020797 0.328734511 0.239615426 43.4511252 0.537095145 0.065717368 248.1575734 0.1 1 8.102525775 VIHDNFGIVEGLMTTVHAITATQK ddPTM_HeLa_CUDC101_4h_R1 2 VIHDNFGIVEGLMTTVHAITATQK 24 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 142.23 4.03E-09 13184500 5352.5 4345.1 4096 4002.7 5440.4 4644.4 4349.8 4453.4 4804.3 5055.2 FALSE FALSE TRUE 4725.088064 4478.967381 4317.44215 4165.947407 5039.072531 4555.815808 4517.573243 4960.357055 4606.264721 5025.131446 0.940291436 0.891313477 0.859169993 0.829022574 1.002774273 0.906606296 0.898996035 0.987109911 0.916645618 1 12.29494562 -8.215305596 0.991978839 0.989864185 0.910282034 0.038790953 0.055022924 0.420150915 0.867122496 0.015471735 0.010761677 6.09E-09 8.215305596 -0.079582152 VIHGK(ac)LLDMVGK ddPTM_HeLa_CUDC101_4h_R1 1 VIHGKLLDMVGK 12 1 Q15382 Q15382 RHEB GTP-binding protein Rheb 0 1 VIHGK(1)LLDMVGK 60.641 0.037027 1975100 2213.2 1942.7 1845.6 2380 1788.1 1640.4 1709 1754.6 1622.9 2153.3 FALSE TRUE FALSE 1953.772051 2002.552284 1945.378719 2477.066687 1656.195425 1609.112103 1774.916702 1954.336572 1556.003375 2140.492076 0.91276771 0.935556972 0.908846494 1.157241699 0.773745179 0.751748685 0.829209658 0.913031444 0.726937227 1 11.06372678 VIILMLTNQTVHR ddPTM_HeLa_CUDC101_4h_R1 2 VIILMLTNQTVHR 13 0 G3V198;Q12769;E9PR16;Q12769-2 G3V198 NUP160 Nuclear pore complex protein Nup160 0 0 ; ; 117.95 0.002432 728750 0 0 0 0 0 138.06 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 135.4267355 0 0 0 0 0 QGPVSQSATQQPVTADKQQGHEPVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 QGPVSQSATQQPVTADKQQGHEPVSPR 27 1 Q9BTA9-2;Q9BTA9;A0A0A0MRT2;Q9BTA9-5 Q9BTA9-2 WAC WW domain-containing adapter protein with coiled-coil 1 0 QGPVSQSAT(0.002)QQPVT(0.151)ADKQQGHEPVS(0.846)PR;QGPVSQSATQQPVT(0.002)ADKQQGHEPVS(0.998)PR ; 102.76 3.55E-07 191248000 4335.5 3522 3647.4 3805.6 4729.7 3980.1 4252 5069.2 4612 3293.2 TRUE FALSE FALSE 3827.299262 3630.508645 3844.589477 3960.808817 4380.799454 3904.186224 4416.001064 5646.257238 4421.891408 3273.6119 1.169136532 1.109022314 1.174418225 1.209920094 1.338215887 1.192623421 1.348969028 1.724779055 1.350768369 1 11.67666758 -1 0.336403932 1.065449674 7.201773969 0.606276207 0.117604469 15.87646076 0.200808465 0.026368577 61.80139134 0.1 1 6.136324295 VIISAPSADAPMFVMGVNHEK ddPTM_HeLa_CUDC101_4h_R1 5 VIISAPSADAPMFVMGVNHEK 21 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;;; ;;;; 287 8.98E-101 35462400 4883.41 4187.46 4081.56 4219.99 5235.55 4658.21 4697.84 4561.95 4590.09 5256.92 FALSE FALSE TRUE 4310.984083 4316.470679 4302.22148 4392.099433 4849.333907 4569.362405 4879.037262 5081.263948 4400.884547 5225.651606 0.824965843 0.826015778 0.823288999 0.840488376 0.927986455 0.874410074 0.933670598 0.972369444 0.842169528 1 12.35139523 -2.210062283 16.14749583 0.901092729 0.8891841 0 0.064799441 0 0 0.010726553 0 0.006165066 2.210062283 -0.011908629 VIKDFMIQGGDFTR ddPTM_HeLa_CUDC101_4h_R1 1 VIKDFMIQGGDFTR 14 1 P23284 P23284 PPIB Peptidyl-prolyl cis-trans isomerase B 0 0 89.44 0.018826 17638000 4531 4263 3545.4 3849.3 3495.7 3934.6 4048.9 4494 3775.3 3862.4 FALSE FALSE TRUE 3999.883049 4394.337977 3737.075048 4006.291092 3237.829175 3859.55406 4205.067429 5005.578795 3619.680536 3839.426273 1.041791863 1.14452985 0.973342052 1.043460873 0.843310679 1.005242395 1.09523328 1.303730932 0.942765996 1 11.90667503 -4.315803543 2.597912797 1.014399613 1.34465121 0.60291244 0.074275964 0.21591205 2.017761057 0.009865988 0.14618946 4.83E-05 4.315803543 0.330251597 VIKPGGPYVGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 VIKPGGPYVGKR 12 2 O00472 O00472 ELL2 RNA polymerase II elongation factor ELL2 0 1 VIKPGGPYVGK(1)R 92.611 0.029484 8951000 2403.6 2460.6 2661.8 3189.6 2965.2 2386.4 2389.6 1767.9 1791.2 1689.8 FALSE TRUE FALSE 2121.853652 2536.408169 2805.70496 3319.685675 2746.463104 2340.883396 2481.767672 1969.15059 1717.365978 1679.748994 1.263196858 1.509992373 1.670312034 1.976298653 1.635043755 1.393591188 1.477463407 1.172288596 1.022394407 1 10.71402995 -7.605677886 1.310213189 1.079306564 1.56676609 0.527597452 0.200417448 0.24081244 0.842452758 0.047157521 0.048098037 2.48E-08 7.605677886 0.487459526 VILHLK ddPTM_HeLa_CUDC101_4h_R1 3 VILHLK 6 0 P07900;P07900-2;G3V2J8;Q58FF6;Q14568;P08238;Q58FF7 P07900;P08238 HSP90AA1;HSP90AB4P;HSP90AA2P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ;; ;; 100.78 0.025287 62030000 69684 53211 48802 53522 48137 48863 46535 45095 49677 47694 FALSE FALSE TRUE 61515.74715 54850.36784 51440.38374 55704.8585 44586.02941 47931.01969 48329.87054 50228.43252 47629.29303 47410.31397 1.29751824 1.156929015 1.085004073 1.174952322 0.9404289 1.010982963 1.019395707 1.059441044 1.004618807 1 15.53291333 -5.770989497 24.99927506 1.142664956 1.008651747 0.264768323 0.086784266 217.6667834 569785.6863 0.016863585 0.030858547 1.69E-06 5.770989497 -0.134013209 VILHLKEDQTEYLEER ddPTM_HeLa_CUDC101_4h_R1 3 VILHLKEDQTEYLEER 16 1 P07900;P07900-2;G3V2J8;Q58FF6;P08238;Q58FF7 P07900;P08238 HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 0 ;; ;; 146.59 0.00013229 121643700 7710.5 8234.8 7612.76 7330.62 9647.5 8435.1 7496.6 8581.9 8164.5 6492.69 FALSE FALSE TRUE 6806.686878 8488.504427 8024.328833 7629.594369 8935.823146 8274.214521 7785.746373 9558.828807 7827.955854 6454.071191 1.054634614 1.315217043 1.24329723 1.182136692 1.384525036 1.282014759 1.206331034 1.481054132 1.212871012 1 12.65599378 -7.313248855 4.489139037 1.023843635 1.292044505 0.435348299 0.101780381 0.083144636 3.59067691 0.013570911 0.015624396 4.86E-08 7.313248855 0.268200871 QSSSS(ph)RDDNMFQIGK ddPTM_HeLa_CUDC101_4h_R1 1 QSSSSRDDNMFQIGK 15 1 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 0 QS(0.012)S(0.028)S(0.185)S(0.775)RDDNMFQIGK 83.633 0.0015789 0 2490.7 2322.3 2398.3 2499 2928.3 2598.1 2637.8 3643.4 2672.6 2362.6 TRUE FALSE FALSE 2198.743922 2393.84731 2527.959352 2600.920022 2712.285143 2548.545571 2739.54083 4058.149929 2562.434297 2348.54715 0.936214511 1.019288589 1.076392847 1.107459146 1.154877875 1.085158359 1.166483215 1.727940582 1.091072111 1 11.19755284 -1 0.744267442 0.992432591 120.9794569 0.872736612 0.074205308 79.51201938 0.329673511 0.012402384 16000.08975 0.1 1 119.9870243 RAGAES(ph)PTMSVDGR ddPTM_HeLa_CUDC101_4h_R1 1 RAGAESPTMSVDGR 14 1 O75362 O75362 ZNF217 Zinc finger protein 217 1 0 RAGAES(0.769)PT(0.215)MS(0.017)VDGR 131.61 5.21E-05 0 1069 1231.6 1016 1049.5 1363.4 1113.4 937.08 1387 1243 1001.3 TRUE FALSE FALSE 943.6934405 1269.544136 1070.928033 1092.303146 1262.824698 1092.16375 973.2234895 1544.890474 1191.763014 995.3442231 0.948107618 1.275482498 1.075937358 1.097412454 1.26873163 1.097272406 0.977775795 1.552116783 1.19733755 1 9.959051734 -1 0.234899137 0.966355784 3.07997189 0.133339189 0.160632004 38.92432646 0.476861942 0.090718092 32.19394651 0.1 1 2.113616106 RAQS(ph)TDSLGTSGSLQSK ddPTM_HeLa_CUDC101_4h_R1 1 RAQSTDSLGTSGSLQSK 17 1 Q15276-2;Q15276;I3L456 Q15276-2 RABEP1 Rab GTPase-binding effector protein 1 1 0 RAQS(0.499)T(0.499)DS(0.002)LGT(0.001)SGSLQSK 228.26 2.47E-56 0 2294.9 2586.8 2159.4 1918.8 2955.8 1993.7 2308 2697.1 2478.2 2078.2 TRUE FALSE FALSE 2025.895301 2666.496242 2276.143696 1997.056958 2737.756523 1955.673494 2397.020333 3004.126962 2376.047547 2065.838774 0.980664767 1.290757186 1.101801227 0.966705138 1.325251785 0.946672857 1.160313362 1.45419236 1.150161173 1 11.01251195 -1 0.386938226 1.009676477 6.345548209 0.225154119 0.144660973 46.4080708 0.558383713 0.034237946 188.9622427 0.1 1 5.335871732 RDDIEDGDS(ph)MISSATSDTGSAK ddPTM_HeLa_CUDC101_4h_R1 2 RDDIEDGDSMISSATSDTGSAK 22 1 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9;H0Y5B5;Q86U86-6 Q86U86-8 PBRM1 Protein polybromo-1 1 0 RDDIEDGDS(0.975)MIS(0.023)S(0.002)ATSDTGSAK;RDDIEDGDS(0.994)MIS(0.005)S(0.001)ATSDTGSAK ; 93.126 0.00016876 22425000 3135.7 2618.4 3515.5 2917.9 3378.5 3383.6 4549.9 5076.7 4473.9 2134.5 TRUE FALSE FALSE 2768.137999 2699.0698 3705.558564 3036.904574 3129.274786 3319.063467 4725.391167 5654.611007 4289.483948 2121.803899 1.30461538 1.272063739 1.746418962 1.431284284 1.474818096 1.564264949 2.227063099 2.665001704 2.021621296 1 11.05107561 -1 0.322615205 1.108083781 16.33110566 0.516205881 0.331891837 12.47622937 0.158899702 0.061907529 113.932407 0.1 1 15.22302188 RES(ph)CGSSVLTDFEGKDVATK ddPTM_HeLa_CUDC101_4h_R1 3 RESCGSSVLTDFEGKDVATK 20 2 H0Y704;O15231-2;O15231-3;H7BZT5;O15231-9;O15231-5;O15231-4;O15231-7;O15231;O15231-8;O15231-6 H0Y704 ZNF185 Zinc finger protein 185 1 0 RES(0.922)CGS(0.071)S(0.007)VLTDFEGKDVATK;RES(0.977)CGS(0.011)S(0.011)VLTDFEGKDVATK;RES(0.966)CGS(0.026)S(0.008)VLTDFEGKDVATK ;; 88.486 0.0018283 59310000 6416.2 6395.5 5679.5 5867.7 7594.2 7085.6 7253.4 7397.6 6759.4 5101.9 TRUE FALSE FALSE 5664.102762 6592.537774 5986.55095 6107.010168 7033.990996 6950.453985 7533.166068 8239.712882 6480.774671 5071.553672 1.116837784 1.29990496 1.180417548 1.204169484 1.386949927 1.370478247 1.485376387 1.62469204 1.277867709 1 12.30821207 -1 0.179070136 0.955276697 3.794780586 0.667667953 0.099775502 9.490935879 0.102746388 0.067059053 7.366688432 0.1 1 2.83950389 RGS(ph)FSSENYWR ddPTM_HeLa_CUDC101_4h_R1 2 RGSFSSENYWR 11 1 Q6P6C2-3;Q6P6C2;K7ER58;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 0 RGS(0.99)FS(0.001)S(0.009)ENYWR;RGS(0.775)FS(0.022)S(0.203)ENYWR ; 122.55 0.0075512 152727000 3327.3 2682.9 2796.3 3027.4 3772 3443.6 3489.7 4240.5 2849 2432.88 TRUE FALSE FALSE 2937.278938 2765.556969 2947.476436 3150.870458 3493.747075 3377.919067 3624.298898 4723.221379 2731.563014 2418.409122 1.214550058 1.143543888 1.218766672 1.302869076 1.444646832 1.396752533 1.498629353 1.953028269 1.129487558 1 11.23984261 -1 0.272223204 1.053081428 6.816623859 0.903006216 0.07906534 10.3140669 0.130964823 0.038702669 28.37581126 0.1 1 5.763542431 RGSLEMS(ph)SDGEPLSR ddPTM_HeLa_CUDC101_4h_R1 1 RGSLEMSSDGEPLSR 15 1 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 0 RGS(0.187)LEMS(0.406)S(0.406)DGEPLSR 125.33 0.0016355 19385000 2181.4 1873.1 1957 1921.5 2233 2049.1 2157.9 2318.4 1657.3 1792.1 TRUE FALSE FALSE 1925.699599 1930.807991 2062.80134 1999.867075 2068.276039 2010.016832 2241.130926 2582.317285 1588.985393 1781.440509 1.080978898 1.083846461 1.157940065 1.122612327 1.161013252 1.128309826 1.258044214 1.449566949 0.891966577 1 10.79882859 -1 0.326512751 1.030762484 4.875111026 0.812940778 0.060903776 12.51796536 0.159169655 0.014881293 29.33556037 0.1 1 3.844348542 LVVVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 LVVVKK 6 1 Q9BW85 Q9BW85 CCDC94 Coiled-coil domain-containing protein 94 0 1 ; LVVVK(1)K;LVVVK(1)K 94.669 0.02636 14212100 9370.5 11678.4 12590.6 14452.8 16151.2 14853.3 17382.6 26659 7309.3 7496.3 FALSE TRUE FALSE 8272.104195 12038.19766 13271.28592 15042.24765 14959.75815 14569.99805 18053.0527 29693.7528 7008.00756 7451.711674 1.110094507 1.61549429 1.780971473 2.018629855 2.007559982 1.955255207 2.42267193 3.984823098 0.940456081 1 12.86335614 -1 0.289863608 0.982892496 22.25310786 0.884810967 0.285888028 11.03443459 0.141021766 0.119653653 121.9344247 0.1 1 21.27021536 RLEEETEYLNS(ph)QLEDAIR ddPTM_HeLa_CUDC101_4h_R1 1 RLEEETEYLNSQLEDAIR 18 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 0 RLEEETEYLNS(1)QLEDAIR 94.259 0.0011625 0 273.7 208.97 297.83 222.93 370.64 354.72 284.26 404.23 228.84 314.73 TRUE FALSE FALSE 241.6173009 215.408118 313.9315907 232.022049 343.2986256 347.954307 295.2240034 450.2459092 219.4071183 312.857972 0.772290696 0.688517274 1.003431649 0.741621022 1.097298635 1.112179769 0.943635866 1.439138362 0.701299433 1 8.289364056 -1 0.647695784 0.880209843 45.82918991 0.579273417 0.144731032 117.1656438 0.707063774 0.024413382 7563.581899 0.1 1 44.94898007 RLS(ph)DEHEPEQR ddPTM_HeLa_CUDC101_4h_R1 2 RLSDEHEPEQR 11 1 Q9UK59-2;Q9UK59 Q9UK59-2 DBR1 Lariat debranching enzyme 1 0 RLS(1)DEHEPEQR;RLS(1)DEHEPEQR ; 104.55 0.013838 27361000 2736.7 2432 2230.86 2303.6 3108.8 2186.95 2121.44 1851.74 2553.3 2759.8 TRUE FALSE FALSE 2415.908175 2506.927037 2351.46704 2397.550765 2879.470018 2145.237572 2203.264651 2062.534597 2448.051893 2743.384587 0.880630512 0.913808093 0.857140866 0.873938994 1.049604941 0.781967495 0.803119133 0.751821165 0.892347323 1 11.42174117 -1 0.10713591 1.042091815 0.287316889 0.311358762 0.072804285 82.30375007 0.621054319 0.462560678 9.205893607 0.1 1 -0.754774926 RNS(ph)TTIMSR ddPTM_HeLa_CUDC101_4h_R1 1 RNSTTIMSR 9 1 G1UD79;Q7Z309-3;Q7Z309-4;Q7Z309-2;Q7Z309 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 RNS(0.991)T(0.006)T(0.003)IMSR 105.2 0.026317 14444000 2513.4 2121.4 2532.3 2254.2 2764.9 2679.9 2556.1 2607.3 2341.6 1986.7 TRUE FALSE FALSE 2218.783062 2186.75782 2669.203798 2346.136019 2560.938835 2628.785373 2654.689633 2904.104493 2245.078257 1974.88302 1.123501007 1.107284734 1.351575648 1.187987337 1.296754699 1.33110941 1.344226269 1.470519754 1.136815819 1 10.94755148 -1 0.119302865 0.876710282 2.710150195 0.736533969 0.070725808 21.30699841 0.175075758 0.240811753 6.514525208 0.1 1 1.833439913 RPAS(ph)TAGLPTAGLPTATGLPSGAPPGVATIR ddPTM_HeLa_CUDC101_4h_R1 3 RPASTAGLPTAGLPTATGLPSGAPPGVATIR 31 1 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 0 RPAS(0.492)T(0.492)AGLPT(0.016)AGLPTATGLPSGAPPGVATIR;RPAS(0.587)T(0.359)AGLPT(0.052)AGLPT(0.001)ATGLPSGAPPGVATIR;RPAS(0.452)T(0.452)AGLPT(0.094)AGLPT(0.002)ATGLPSGAPPGVATIR ;; 82.339 2.42E-07 30356000 1377.23 1175.71 1200.52 1138.04 1479.05 1234.69 812.62 1055.89 1184.99 1382.13 TRUE FALSE FALSE 1215.793187 1211.932232 1265.423743 1184.45419 1369.943428 1211.140345 843.9630256 1176.08825 1136.144211 1373.909029 0.884915348 0.882105151 0.921038959 0.862105252 0.997113636 0.881528776 0.61427868 0.8560161 0.826942823 1 10.42407077 -1 0.154877777 1.000946597 0.109150984 0.121151546 0.095420421 52.99412201 0.52504022 0.16902117 10.7452066 0.1 1 -0.891795613 RPS(ph)QNAISFFNVGHSK ddPTM_HeLa_CUDC101_4h_R1 1 RPSQNAISFFNVGHSK 16 1 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 0 RPS(0.991)QNAIS(0.009)FFNVGHSK 57.39 0.035723 19521000 1132.6 1092.3 991.66 1143.1 1253.4 1239.5 1155.2 1457.1 1184 969.73 TRUE FALSE FALSE 999.8383449 1125.952468 1045.272139 1189.720559 1160.939179 1215.858603 1199.756451 1622.970374 1135.195019 963.9620028 1.037217589 1.168046526 1.084349939 1.234198605 1.204341225 1.261313827 1.244609692 1.683645589 1.177634612 1 9.91283247 -1 0.319247884 1.00902799 6.555525583 0.74184991 0.091078469 12.69745553 0.161915393 0.024027045 41.65791148 0.1 1 5.546497593 RQGS(ph)FSEDVISHK ddPTM_HeLa_CUDC101_4h_R1 1 RQGSFSEDVISHK 13 1 A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3;H0Y390;Q9UPN3-5;E9PNZ4;H3BPE1;H3BQK9 A0A590UJG2;H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 0 RQGS(0.644)FS(0.356)EDVISHK 114.28 0.0018611 36257000 5334.9 4374.9 4215 4566.1 5113.9 4634.5 4948.7 4862.3 4366.7 4257.1 TRUE FALSE FALSE 4709.551109 4509.685483 4442.87565 4752.325294 4736.657785 4546.104634 5139.573017 5415.804578 4186.702778 4231.77858 1.112901117 1.065671419 1.04988377 1.123008968 1.119306622 1.074277529 1.214518416 1.279793939 0.989348261 1 12.04704843 -1 0.339859962 1.04477929 3.563758229 0.778361514 0.040229957 21.62083701 0.272859553 0.014072585 35.02232231 0.1 1 2.518978939 VITEEEK(ac)NFK ddPTM_HeLa_CUDC101_4h_R1 2 VITEEEKNFK 10 1 P26373;P26373-2;H3BUK8;J3KS98 P26373 RPL13 60S ribosomal protein L13 0 1 ; VITEEEK(1)NFK;VITEEEK(1)NFK 143.04 7.65E-09 809590 591.09 360.73 358.06 435.53 1289.35 906.92 1240.2 1030.12 755.52 324.635 FALSE TRUE FALSE 521.8033262 371.8436637 377.4178067 453.2927959 1194.237219 889.622012 1288.034929 1147.384697 724.3771458 322.7040566 1.616971698 1.152274526 1.16954776 1.404670275 3.700719575 2.756773564 3.991381277 3.555532301 2.244710381 1 8.334067903 -5.772815099 11.99064762 1.283269878 3.483121014 0.835417692 0.447132844 0.096705914 100.7905519 0.052166825 0.096608031 1.69E-06 5.772815099 2.199851137 RSPS(ph)PSPTPEAK ddPTM_HeLa_CUDC101_4h_R1 1 RSPSPSPTPEAK 12 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 0 RS(0.099)PS(0.865)PS(0.035)PTPEAK 77.24 0.021835 17813000 5001.6 4653.3 4984.8 4867.6 4431.3 4566.3 4760.8 5195.2 4958 4301.5 TRUE FALSE FALSE 4415.32003 4796.662657 5254.293366 5066.121768 4104.411827 4479.205435 4944.425651 5786.600568 4753.629141 4275.914487 1.03260251 1.121786386 1.22881161 1.184804276 0.959890999 1.047543268 1.156343436 1.353301285 1.111722219 1 12.06201729 -1 0.222552031 1.002613814 2.319982955 0.223859793 0.09841225 42.01468525 0.504873512 0.072868539 20.14670065 0.1 1 1.31736914 VK(ac)LQEMEGTVK ddPTM_HeLa_CUDC101_4h_R1 3 VKLQEMEGTVK 11 1 P35579;P35579-2 P35579 MYH9 Myosin-9 0 1 ;; VK(1)LQEMEGTVK;VK(1)LQEMEGTVK;VK(1)LQEMEGTVK 201.6 7.11E-09 4016270 1279.1 875.52 768.62 543.1 1024.86 1343.84 1218.54 1418.71 842.45 654.85 FALSE TRUE FALSE 1129.165837 902.4937335 810.1739221 565.2499655 949.2581196 1318.208491 1265.539496 1580.210212 807.7238544 650.9549231 1.734629844 1.386415098 1.244592972 0.868339643 1.458254767 2.025038054 1.944127698 2.427526324 1.240829166 1 9.346413834 -5.247999115 3.07757826 1.314615633 2.147803974 0.717916028 0.24760696 0.147312756 2.835501879 0.047098788 0.127354071 5.65E-06 5.247999115 0.833188341 RTSS(ph)LDTITGPYLTGQWPR ddPTM_HeLa_CUDC101_4h_R1 1 RTSSLDTITGPYLTGQWPR 19 1 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 RT(0.024)S(0.219)S(0.717)LDT(0.036)IT(0.003)GPY(0.001)LTGQWPR 98.572 0.0035589 30419000 1622.3 1598.5 1629.5 1328.3 1757.5 1539.4 1620.7 1630.9 1997.8 1479.5 TRUE FALSE FALSE 1432.136453 1647.74789 1717.595699 1382.473815 1627.852726 1510.03851 1683.210942 1816.555064 1915.449838 1470.699868 0.973778868 1.120383517 1.167876421 0.940010838 1.106855832 1.026748246 1.144496561 1.235163682 1.302407024 1 10.52228714 -1 0.307081916 0.991604197 2.984535032 0 0.120487928 32.46993167 0.415207407 0.026049573 36.33286841 0.1 1 1.992930835 RYS(ph)SSGTPSSASPALSR ddPTM_HeLa_CUDC101_4h_R1 2 RYSSSGTPSSASPALSR 17 1 Q14934-18;Q14934-17;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-9;Q14934-10;Q14934-11;Q14934-12;Q14934-13;Q14934-14;Q14934-15;Q14934-16;Q14934-2 Q14934-18 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 1 0 RY(0.055)S(0.527)S(0.2)S(0.2)GT(0.017)PSSASPALSR;RYS(0.691)S(0.249)S(0.056)GT(0.003)PSSASPALSR ; 66.732 0.017075 47491000 1463.45 1483.53 1273.86 1750.85 1540.7 1587.75 1676.12 1738.15 1743.54 1406.46 TRUE FALSE FALSE 1291.906609 1529.235801 1342.728725 1822.257231 1427.045631 1557.466314 1740.76851 1936.01397 1671.670543 1398.094313 0.924048254 1.093800172 0.960399246 1.303386484 1.0207077 1.11399231 1.245100916 1.384752053 1.195677951 1 10.44924597 -1 0.307240846 0.959965117 4.742222317 0.348694369 0.117997623 21.98330799 0.28110528 0.033398647 46.71667204 0.1 1 3.7822572 S(ph)AEDELAMR ddPTM_HeLa_CUDC101_4h_R1 2 SAEDELAMR 9 0 A3KFL1;A3KFL5;A3KFL2;Q13868-3;Q13868-2;Q13868 A3KFL1 EXOSC2 Exosome complex component RRP4 1 0 S(1)AEDELAMR;S(1)AEDELAMR ; 147.3 0.0010009 41259000 1793.28 1635.06 1615.96 1586.22 1666.41 1559.24 1485.59 1179.56 1463.27 1847.32 TRUE FALSE FALSE 1583.074437 1685.434261 1703.323686 1650.912908 1543.482254 1529.500095 1542.889704 1313.836342 1402.953391 1836.332058 0.862085062 0.917826519 0.927568452 0.899027439 0.840524592 0.832910414 0.840201911 0.715467737 0.763997658 1 10.84261125 -1 0.06225541 1.178181052 0.202252203 0 0.078145609 127.0300924 0.595399979 1.865733306 11.20533541 0.1 1 -0.975928849 S(ph)CFRAGVRY(ph)Y(ph)VR ddPTM_HeLa_CUDC101_4h_R1 1 SCFRAGVRYYVR 12 2 F8WDN7;E9PGZ4;A0A5F9ZHN7;Q9NTJ5-2;Q9NTJ5 F8WDN7 SACM1L Phosphatidylinositide phosphatase SAC1 3 0 S(1)CFRAGVRY(1)Y(1)VR 47.037 0.036946 3024700 204.29 227.78 180.37 202.12 229.06 155.86 242.9 242.48 264.88 165.41 TRUE FALSE FALSE 180.3434359 234.7976318 190.1213478 210.3633272 212.1627002 152.8872302 252.2687344 270.0829431 253.9615343 164.426134 1.096805183 1.427982439 1.156272079 1.279378905 1.290322256 0.929823176 1.534237461 1.642579172 1.544532661 1 7.36129581 -1 0.218301214 1.007829107 3.850569806 0 0.234389626 32.60079594 0.388781471 0.129734025 32.87548158 0.1 1 2.842740699 S(ph)ISTSGPLDKEDTGR ddPTM_HeLa_CUDC101_4h_R1 2 SISTSGPLDKEDTGR 15 1 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 0 S(0.938)IS(0.058)T(0.002)S(0.002)GPLDKEDTGR;S(0.99)IS(0.008)T(0.001)S(0.001)GPLDKEDTGR ; 172.57 2.90E-06 32043000 4695.4 3785.8 4314.7 3836 4384.1 4316.7 4288.6 4925.1 3759.6 3656.8 TRUE FALSE FALSE 4145.01233 3902.436011 4547.965733 3992.448661 4060.693677 4234.36614 4454.012739 5485.753476 3604.627697 3635.049191 1.140290574 1.073557965 1.25114283 1.098320394 1.11709456 1.164871757 1.225296414 1.509127714 0.991631064 1 11.82775917 -1 0.602381586 1.078516855 27.42437628 0.769017481 0.068282719 59.35924554 0.419781979 0.013099119 2066.013088 0.1 1 26.34585942 S(ph)KSVPGLNVDMEEEEEEEDIDHLVK ddPTM_HeLa_CUDC101_4h_R1 3 SKSVPGLNVDMEEEEEEEDIDHLVK 25 1 Q96C24-2;Q96C24 Q96C24-2 SYTL4 Synaptotagmin-like protein 4 1 0 S(0.613)KS(0.387)VPGLNVDMEEEEEEEDIDHLVK;S(0.832)KS(0.168)VPGLNVDMEEEEEEEDIDHLVK;S(0.5)KS(0.5)VPGLNVDMEEEEEEEDIDHLVK ;; 99.569 2.33E-06 64513000 10548.5 9233.3 8774.1 9166.9 9030.5 9628.7 9468.1 9598.8 8329.2 8497.3 TRUE FALSE FALSE 9312.02082 9517.767029 9248.454386 9540.765805 8364.338006 9445.04859 9833.287789 10691.48859 7985.866851 8446.757682 1.10243731 1.12679532 1.094911768 1.129518114 0.990242448 1.118186285 1.164149388 1.265750599 0.94543577 1 13.04418195 -1 0.069351007 0.877791868 1.646593519 0.543801075 0.06006559 166.888297 0.863866403 1.727224465 12.6199607 0.1 1 0.768801651 VKEGMNIVEAMER ddPTM_HeLa_CUDC101_4h_R1 3 VKEGMNIVEAMER 13 1 P62937;P62937-2 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed" 0 0 ;; ;; 137.62 0.0010412 307211000 7144.1 6858.2 6124.7 6786.1 7535.1 7078.6 6442 6195.8 6823.4 5690 FALSE FALSE TRUE 6306.679428 7069.493013 6455.819808 7062.86649 6979.250685 6943.587499 6690.470098 6901.104828 6542.136564 5656.155627 1.115011652 1.249875972 1.141379452 1.248704413 1.233921261 1.227616062 1.182865278 1.220105189 1.156640127 1 12.4656061 -7.919447901 0.640912383 1.010316154 1.222424969 0.401777407 0.057359466 0.168402314 0.157054211 0.014053988 0.010093722 1.20E-08 7.919447901 0.212108814 VKELQAEQEDR ddPTM_HeLa_CUDC101_4h_R1 1 VKELQAEQEDR 11 1 Q00341;Q00341-2;A0A024R4E5;H0Y394 Q00341 HDLBP Vigilin 0 0 93.839 0.024607 10894000 2999.7 3010.1 2827.9 2967.4 3436.8 2753.3 3232.8 3073.3 3505.8 3145.3 FALSE FALSE TRUE 2648.079713 3102.837613 2980.784828 3088.423398 3183.274111 2700.78539 3357.490179 3423.152049 3361.28944 3126.591616 0.84695414 0.992402589 0.95336558 0.987792388 1.018129165 0.863811371 1.073849927 1.094851029 1.075065072 1 11.61037508 -2.515295948 0.634113627 0.93612672 2.629045591 0.116120587 0.075145114 20.5563611 0.971546953 0.012536305 41.03741277 0.00305284 2.515295948 1.692918871 S(ph)LEGELQR ddPTM_HeLa_CUDC101_4h_R1 1 SLEGELQR 8 0 Q5TZA2-2;Q5TZA2 Q5TZA2-2 CROCC Rootletin 1 0 S(1)LEGELQR 110.53 0.011355 3603600 1211.3 1102.6 968.61 1101.3 1292.9 1084 1134.1 1246.2 1418.9 1039.7 TRUE FALSE FALSE 1069.31325 1136.569799 1020.975986 1146.215774 1197.525343 1063.324506 1177.842617 1388.062371 1360.412341 1033.515818 1.034636559 1.09971205 0.987866822 1.109045216 1.15869087 1.028842024 1.139646434 1.343048985 1.316295617 1 10.01334475 -1 0.510468614 1.023447761 10.98049798 0.173521742 0.106843122 37.64314694 0.351666663 0.010369212 406.3398633 0.1 1 9.95705022 S(ph)LSSPTVTLSAPLEGAK ddPTM_HeLa_CUDC101_4h_R1 1 SLSSPTVTLSAPLEGAK 17 0 A0A1B0GVY1;Q96PU5-9;Q96PU5-4;Q96PU5-2;Q96PU5-6;Q96PU5-5;Q96PU5-7;Q96PU5 A0A1B0GVY1 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 0 S(0.564)LS(0.336)S(0.099)PT(0.001)VTLSAPLEGAK 208.38 1.20E-23 337810000 4543.7 3694 3747.5 4048.8 4114.7 4265.5 4026 4084.5 3836.5 3653.7 TRUE FALSE FALSE 4011.094374 3807.807762 3950.101186 4213.927564 3811.166779 4184.142694 4181.284169 4549.46297 3678.357846 3631.96763 1.104386047 1.048414565 1.087592619 1.160232688 1.049339412 1.152031934 1.151244888 1.252616607 1.01277275 1 11.82653563 -1 0.125179027 0.976403362 1.708924009 0.712967946 0.039814749 39.37245891 0.335612863 0.162358405 5.0800746 0.1 1 0.732520646 VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEK ddPTM_HeLa_CUDC101_4h_R1 1 VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEK 34 1 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 0 0 179.64 9.86E-27 5895100 6754.8 5938.2 5660.5 5209.5 6098.7 5957.6 5535.6 5199.3 6551.2 4221.2 FALSE FALSE TRUE 5963.012584 6121.148903 5966.523752 5421.965927 5648.811051 5843.968706 5749.109946 5791.167296 6281.156763 4196.092115 1.42108715 1.45877372 1.421923921 1.292146545 1.34620759 1.392716972 1.370110519 1.3801335 1.49690631 1 12.03483063 -9.204072301 0.843545161 0.988512435 1.385669647 0 0.158501059 0.157635903 0.193183755 0.040437432 0.010182203 6.25E-10 9.204072301 0.397157212 VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK ddPTM_HeLa_CUDC101_4h_R1 1 VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKK 39 3 P06748;P06748-2;P06748-3 P06748 NPM1 Nucleophosmin 0 0 46.082 0.0068133 28580000 1073.4 989.25 1054.7 939.74 1652.8 1160.9 832.66 1616.6 1055.3 645.82 FALSE FALSE TRUE 947.5776792 1019.72762 1111.720272 978.0666591 1530.876237 1138.757767 864.7759751 1800.627209 1011.800087 641.9786339 1.476026816 1.588413642 1.731709147 1.52351902 2.384621786 1.773825026 1.347047907 2.804808625 1.576065049 1 9.326381473 -1.000000001 0.068731625 3.39E-12 5.622882027 0.337058739 0.400143239 132.4409914 0.679973159 10.12333716 72.71706299 0.1 1.000000001 5.622882027 S(ph)LVGTPYWMAPELISR ddPTM_HeLa_CUDC101_4h_R1 2 SLVGTPYWMAPELISR 16 0 O96013;O96013-2;O96013-4;M0R1R1;O96013-3 O96013 PAK4 Serine/threonine-protein kinase PAK 4 1 0 S(0.991)LVGT(0.009)PYWMAPELISR;S(0.988)LVGT(0.012)PYWMAPELISR ; 142.57 0.00058658 107221000 2306.18 2188 1961.85 1640.47 2317.22 2121.3 1717.39 1399.47 1830.49 2368.37 TRUE FALSE FALSE 2035.853076 2255.409687 2067.913545 1707.375457 2146.283297 2080.839737 1783.630308 1558.780008 1755.036427 2354.28283 0.864744478 0.958002861 0.878362412 0.725221046 0.911650576 0.883852913 0.757610889 0.66210397 0.745465415 1 11.20107193 -1 0.11686981 1.047348168 0.05371495 0.108897074 0.09864261 53.75595318 0.434691969 0.341905535 8.704014572 0.1 1 -0.993633218 S(ph)QRYSGAYGASVSDEELK ddPTM_HeLa_CUDC101_4h_R1 1 SQRYSGAYGASVSDEELK 18 1 C9JRZ6;F8WAR4;Q9NX63;A0A286YEX5 C9JRZ6 CHCHD3 MICOS complex subunit MIC19 1 0 S(0.591)QRY(0.039)S(0.37)GAYGASVSDEELK 93.416 0.0022314 105300000 2207.3 1977.2 1526.7 1954.4 2236.8 2208.3 1824.7 2563 1669 1634.6 TRUE FALSE FALSE 1948.56364 2038.115188 1609.23802 2034.10888 2071.79572 2166.180357 1895.07929 2854.76156 1600.203114 1624.877327 1.199206616 1.254319422 0.990375085 1.251853815 1.275047468 1.333134706 1.166290685 1.756908976 0.984814723 1 10.66611509 -1 0.41344863 1.094128996 10.44352735 0.651514648 0.127438883 32.44274196 0.375045116 0.029616411 252.2468995 0.1 1 9.349398357 SAS(ph)PDDDLGSSNWEAADLGNEERK ddPTM_HeLa_CUDC101_4h_R1 4 SASPDDDLGSSNWEAADLGNEERK 24 1 E9PM92;O00193;E9PQA1 E9PM92 C11orf58;SMAP Small acidic protein 1 0 S(0.049)AS(0.85)PDDDLGS(0.056)S(0.045)NWEAADLGNEERK;S(0.051)AS(0.946)PDDDLGS(0.003)S(0.001)NWEAADLGNEERK;S(0.029)AS(0.882)PDDDLGS(0.086)S(0.004)NWEAADLGNEERK;S(0.032)AS(0.935)PDDDLGS(0.031)S(0.001)NWEAADLGNEERK ;;; 181.43 4.65E-15 767227000 7292.3 7166.7 6357.2 6581.8 9290.8 7185.2 7144.9 7925.7 8412.1 6046.8 TRUE FALSE FALSE 6437.507648 7387.497532 6700.889461 6850.234253 8605.436194 7048.154281 7420.481186 8827.929651 8065.349677 6010.833365 1.070984214 1.229030499 1.114802067 1.139648005 1.431654427 1.172575224 1.234517867 1.468669836 1.341802241 1 12.55334931 -1 0.13826943 0.919144714 2.568134563 0.043509156 0.142446098 32.71125516 0.299922265 0.248349704 10.67783279 0.1 1 1.648989849 SAS(ph)WGSTDQLKEIAK ddPTM_HeLa_CUDC101_4h_R1 2 SASWGSTDQLKEIAK 15 1 Q6P1L5 Q6P1L5 FAM117B Protein FAM117B 1 0 S(0.009)AS(0.989)WGS(0.002)TDQLKEIAK;SAS(1)WGSTDQLKEIAK ; 191.78 8.29E-11 37056000 1172.44 1327.66 1060.69 1008.59 1662.73 980.15 1367.76 1498.3 1474.97 925.56 TRUE FALSE FALSE 1035.008361 1368.563631 1118.03411 1049.72466 1540.073721 961.4552718 1420.514961 1668.860416 1414.171112 920.054728 1.124942168 1.487480678 1.21518218 1.140937194 1.6738936 1.044997914 1.543946157 1.813870811 1.537051079 1 9.84557587 -1 0.170698745 0.946832875 3.894051716 0.08974531 0.259355213 34.13487409 0.35940804 0.283614309 25.85901665 0.1 1 2.947218841 SASPDDDLGS(ph)SNWEAADLGNEERK ddPTM_HeLa_CUDC101_4h_R1 2 SASPDDDLGSSNWEAADLGNEERK 24 1 E9PM92;O00193;E9PQA1 E9PM92 C11orf58;SMAP Small acidic protein 1 0 SAS(0.001)PDDDLGS(0.499)S(0.499)NWEAADLGNEERK;S(0.005)AS(0.098)PDDDLGS(0.696)S(0.201)NWEAADLGNEERK ; 154.07 4.59E-09 877959000 3058.5 2866.5 2644.7 2670.91 3655.9 2662.7 3007.7 3232.8 3273.5 2817.7 TRUE FALSE FALSE 2699.987266 2954.813467 2787.680482 2779.841254 3386.211541 2611.913434 3123.707997 3600.808885 3138.564944 2800.940195 0.963957485 1.054936293 0.995265978 0.992467193 1.208955317 0.932513103 1.115235521 1.285571499 1.120539792 1 11.45169546 -1 0.590901377 0.992323508 17.52334005 0.386977983 0.084746895 77.92983504 0.572555696 0.012532444 1664.085299 0.1 1 16.53101654 SASQSS(ph)LDKLDQELKEQQK ddPTM_HeLa_CUDC101_4h_R1 2 SASQSSLDKLDQELKEQQK 19 2 O60271;A0A087X2D8;O60271-3;O60271-9;O60271-4;O60271-2;O60271-5 O60271 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 0 SAS(0.002)QS(0.226)S(0.772)LDKLDQELKEQQK;SASQS(0.05)S(0.95)LDKLDQELKEQQK ; 151.64 3.04E-05 73253000 5629 5417 5538 4772.1 6167.4 5589 5765 6161.8 6418.5 5271.7 TRUE FALSE FALSE 4969.177153 5583.891349 5837.401032 4966.726865 5712.443189 5482.399137 5987.357981 6863.234405 6153.926713 5240.343694 0.948254054 1.06555823 1.113934767 0.947786473 1.090089415 1.046190757 1.142550629 1.309691655 1.17433647 1 12.35544572 -1 0.487818135 0.985563778 10.27568922 0.413757559 0.080034934 32.28673007 0.319673983 0.011132938 307.5024843 0.1 1 9.290125442 VKTPEMIIQK(ac)PK ddPTM_HeLa_CUDC101_4h_R1 1 VKTPEMIIQKPK 12 2 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 1 VKTPEMIIQK(1)PK 87.498 0.040024 904140 711.58 438.89 278.76 269.31 834.42 642.3 935.27 834.07 782.74 410.57 FALSE TRUE FALSE 628.1696711 452.4116807 293.8306088 280.2936259 772.866499 630.0491976 971.3436772 929.0171574 750.4751259 408.1279114 1.539149011 1.108504633 0.719947351 0.68677887 1.893686948 1.54375425 2.379998158 2.276289201 1.838823332 1 8.672877568 -5.063484063 1.446161772 1.181638306 2.369032856 0.551715248 0.385978555 0.24493085 0.911023763 0.054869092 0.269317571 8.64E-06 5.063484063 1.18739455 SCDELSPVS(ph)PTQGGYPSEPTR ddPTM_HeLa_CUDC101_4h_R1 3 SCDELSPVSPTQGGYPSEPTR 21 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 0 SCDELS(0.002)PVS(0.955)PT(0.031)QGGY(0.008)PS(0.003)EPT(0.001)R;SCDELSPVS(0.5)PT(0.5)QGGYPSEPTR;SCDELS(0.222)PVS(0.776)PT(0.002)QGGYPSEPTR ;; 236.66 9.22E-73 9622200 7169.2 6103.13 6460 5956.59 7082.6 6547.2 6295.7 6475.6 6787 6095.82 TRUE FALSE FALSE 6328.837244 6291.160201 6809.24714 6199.525487 6560.130709 6422.323068 6538.527258 7212.756129 6507.236987 6059.561792 1.044438107 1.038220323 1.1237194 1.02309799 1.082608105 1.059865926 1.079042921 1.190309857 1.073879137 1 12.56499775 -1 0.172451489 0.997228203 1.574363871 0.371124047 0.040791325 31.14009559 0.329867611 0.049355975 4.68031549 0.1 1 0.577135669 VLADPSDDTK ddPTM_HeLa_CUDC101_4h_R1 2 VLADPSDDTK 10 0 Q15149;Q15149-7;Q15149-8;Q15149-5;Q15149-6;Q15149-3;Q15149-2;H0YDN1;Q15149-4;Q15149-9;A0A075B730;P58107 Q15149;Q15149-3;Q15149-4;Q15149-9;A0A075B730;P58107 PLEC;EPPK1 Plectin;Epiplakin 0 0 ; ; 132.01 0.011457 71142000 15358.1 13243.3 13956.4 13197.7 13053.2 13283.3 12745.4 12219.5 12863.1 13153.5 FALSE FALSE TRUE 13557.8468 13651.31038 14710.9252 13735.95925 12090.29144 13029.94318 13236.99435 13610.51849 12332.87757 13075.2624 1.0369082 1.044056323 1.125095983 1.050530294 0.924669125 0.996533973 1.012369308 1.040936547 0.943222185 1 13.67455228 -4.241643262 20.63056723 1.021083308 1.040936729 0.008931201 0.053800657 1862.385419 1940529.705 0.006915857 0.242510463 5.73E-05 4.241643262 0.019853421 VLAEDEELYGDFEDLETGDVHK ddPTM_HeLa_CUDC101_4h_R1 2 VLAEDEELYGDFEDLETGDVHK 22 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 0 0 ; ; 157.88 1.94E-07 6850000 2775.4 2644 2598.4 2268.78 2182 2698.8 2278.96 2596.3 2435 3129.3 FALSE FALSE TRUE 2450.071819 2725.458506 2738.877364 2361.310655 2021.038207 2647.324887 2366.860251 2891.852297 2334.628269 3110.686784 0.78763051 0.876159734 0.880473527 0.759096244 0.649708038 0.851041931 0.760880286 0.929650748 0.750518593 1 11.60301742 -9.502821572 0.554638628 1.052228147 0.801455771 0 0.108723232 1.104635016 0.411806791 0.151544844 0.017882173 3.14E-10 9.502821572 -0.250772376 SCVEEPEPEPEAAEGDGDKKGNAEGS(ph)S(ph)DEEGKLVIDEPAK ddPTM_HeLa_CUDC101_4h_R1 1 SCVEEPEPEPEAAEGDGDKKGNAEGSSDEEGKLVIDEPAK 40 3 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 2 0 SCVEEPEPEPEAAEGDGDKKGNAEGS(1)S(1)DEEGKLVIDEPAK 48.433 0.005496 122550000 1731.1 1654.3 1641.5 1488.7 1587.4 1874.9 1599.6 1959.3 1561.1 1474.6 TRUE FALSE FALSE 1528.183082 1705.267022 1730.244455 1549.415621 1470.300665 1839.139406 1661.297108 2182.338792 1496.750797 1465.829014 1.042538433 1.163346479 1.180386279 1.057023436 1.003050595 1.254675265 1.13334986 1.488808566 1.021095082 1 10.51750111 -1 0.526037799 1.036494617 16.53486285 0.676479582 0.081558212 44.67338202 0.399953098 0.015652391 778.5816511 0.1 1 15.49836823 VLAGDKNFITAEELR ddPTM_HeLa_CUDC101_4h_R1 2 VLAGDKNFITAEELR 15 1 O43707;O43707-2;F5GXS2;O43707-3;H7C144 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 166.62 1.75E-05 77786000 4726 4292.8 3415.7 4397.8 4116.7 4020.9 3661.5 3971.5 4153.8 3782.1 FALSE FALSE TRUE 4172.025444 4425.05608 3600.363074 4577.161293 3813.019243 3944.208032 3802.725282 4423.599507 3982.578606 3759.603901 1.109698137 1.177000609 0.957644254 1.217458385 1.014207705 1.049102016 1.011469661 1.176613181 1.059308031 1 11.87636496 -9.341909278 1.094554272 1.000559298 1.086940083 0.061451699 0.081183661 0.740694945 1.60401127 0.04807398 0.012943481 4.55E-10 9.341909278 0.086380785 (ac)TTPNK(ac)GNK(ac)ALK ddPTM_HeLa_CUDC101_4h_R1 1 TTPNKGNKALK 11 2 I3L2F8;O15525 I3L2F8 MAFG Transcription factor MafG 0 2 TTPNK(1)GNK(1)ALK 68.371 0.021721 1611900 766.32 935.44 1078.4 1769.5 1929.2 1893.3 2030.7 3647.2 691.67 632.94 FALSE TRUE FALSE 676.4931313 964.2597976 1136.701566 1841.667858 1786.88676 1857.188457 2109.024779 4062.382506 663.1590698 629.1752447 1.075206212 1.532577459 1.806653354 2.927114304 2.840046195 2.951782468 3.352046663 6.456678866 1.05401329 1 9.297318098 -1 0.322015484 0.934449282 49.86691482 0.903819624 0.487120788 10.14593388 0.129251061 0.163144306 297.0779289 0.1 1 48.93246553 up VLAGETLSVNDPPDVLDR ddPTM_HeLa_CUDC101_4h_R1 2 VLAGETLSVNDPPDVLDR 18 0 Q12906-7;Q12906-4;Q12906-6;Q12906;Q12906-5;Q12906-2;Q12906-3;K7EKJ9;K7EQR9 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 0 0 ; ; 193.06 5.79E-12 22714700 2536.17 2351.3 2513.1 2498.46 2663.9 2470.9 2537.2 2083.74 2818.28 2344.7 FALSE FALSE TRUE 2238.883997 2423.740766 2648.965788 2600.357998 2467.389404 2423.771699 2635.060654 2320.944539 2702.109306 2330.75362 0.960583726 1.039895742 1.136527587 1.11567262 1.058623006 1.039909014 1.130561648 0.995791455 1.159328589 1 11.18658079 -7.046776042 5.038922773 0.981846809 1.081423832 0 0.069676451 0.110568696 6.460037423 0.006741881 0.008424825 8.98E-08 7.046776042 0.099577023 AAASK(ac)LEQGKR ddPTM_HeLa_CUDC101_4h_R1 2 AAASKLEQGKR 11 2 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 0 1 ; AAASK(1)LEQGKR;AAASK(1)LEQGKR 111.5 0.0071554 18458700 3485 3286.5 3389.2 3967.6 3973.4 3995.2 3792.7 5369 3027.9 2510.72 FALSE TRUE FALSE 3076.493583 3387.75317 3572.430404 4129.415877 3680.290198 3918.998216 3938.985709 5980.185258 2903.08868 2495.786126 1.232675168 1.357389215 1.431384832 1.654555186 1.474601594 1.570246014 1.57825451 2.39611287 1.163196097 1 11.28527859 -1 0.195766338 0.972325048 6.195390822 0.777221669 0.169953865 16.0687074 0.182407462 0.163172712 25.76938162 0.1 1 5.223065774 AIPVPNK(ac)LGLKK ddPTM_HeLa_CUDC101_4h_R1 1 AIPVPNKLGLKK 12 2 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 0 1 AIPVPNK(1)LGLKK 99.343 0.019419 759360 418.88 521.86 527.64 1005.7 1032.8 937.73 1335.8 2266.6 383.27 196.25 FALSE TRUE FALSE 369.7795214 537.937888 556.1658144 1046.716793 956.6124016 919.8443626 1387.322253 2524.620582 367.4714484 195.0826963 1.895501387 2.757486432 2.850923352 5.365503005 4.903625078 4.71515096 7.111457243 12.94128403 1.883670133 1 7.607942007 -1 0.337561911 1.248923637 118.061289 0.914281141 0.973897448 9.707435971 0.122692702 0.302172994 722.6334264 0.1 1 116.8123654 up VLATVTK(ac)PVGGDK ddPTM_HeLa_CUDC101_4h_R1 2 VLATVTKPVGGDK 13 1 Q02878;F8VZ45;U3KQR5;F8VZA3;F8VWR1;F8VU16 Q02878 RPL6 60S ribosomal protein L6 0 1 ; VLATVTK(1)PVGGDK;VLATVTK(1)PVGGDK 108.43 0.0068293 3302200 3287.7 1769.23 1847.72 1436.89 3062.6 2896.9 3131.1 2800.6 2820.9 3006 FALSE TRUE FALSE 2902.32079 1823.737879 1947.613332 1495.492585 2836.6781 2841.646459 3251.867576 3119.408984 2704.621308 2988.120178 0.9712865 0.610329495 0.651785476 0.500479397 0.949318612 0.950981316 1.088265325 1.043936923 0.905124676 1 11.54502246 -7.483767431 24.51828322 0.987332403 0.825276256 0.091110568 0.183542024 586.2533582 367516.3741 0.034362329 0.038660234 3.28E-08 7.483767431 -0.162056147 VLAVNQENEHLMEDYEK ddPTM_HeLa_CUDC101_4h_R1 2 VLAVNQENEHLMEDYEK 17 0 O43707;O43707-2;K7EJH8 O43707 ACTN4 Alpha-actinin-4 0 0 ; ; 167.18 6.12E-06 32790000 6309.6 5698.6 4776.9 5377.2 5424.8 4249.2 4344.8 5596.4 5325.4 6207 FALSE FALSE TRUE 5569.998253 5874.167111 5035.153663 5596.505458 5024.623312 4168.15359 4512.380391 6233.471555 5105.884758 6170.080488 0.902743208 0.952040597 0.81605964 0.907039295 0.81435296 0.675542823 0.7313325 1.010273945 0.827523201 1 12.59107359 -7.207157609 0.460328485 0.987843072 0.795815181 0.058102316 0.101883699 0.720648557 0.377982162 0.03925994 0.048466752 6.21E-08 7.207157609 -0.19202789 VLAVNQENEQLMEDYEK ddPTM_HeLa_CUDC101_4h_R1 1 VLAVNQENEQLMEDYEK 17 0 P12814-4;P12814-3;P12814;P12814-2;H9KV75;G3V2N5;G3V2W4 P12814-4 ACTN1 Alpha-actinin-1 0 0 148.85 0.00072744 7448400 2371.9 1957.5 1560.2 1693.4 1310.4 1553.6 1368.4 1880.6 1556.8 2345.6 FALSE FALSE TRUE 2093.869478 2017.808255 1644.549131 1762.464171 1213.734403 1523.967668 1421.179646 2094.679902 1492.628045 2331.648267 0.898021158 0.865399933 0.70531613 0.755887668 0.520547812 0.653601013 0.609517167 0.898368734 0.640160039 1 11.18713446 -6.977477109 1.030771677 0.964854027 0.666610506 0.092891519 0.139748028 0.212217828 0.444030473 0.018790589 0.025828418 1.05E-07 6.977477109 -0.298243521 VLCLAVAVGHVK ddPTM_HeLa_CUDC101_4h_R1 2 VLCLAVAVGHVK 12 0 P62906 P62906 RPL10A 60S ribosomal protein L10a 0 0 ; ; 144.65 0.00012955 747910 1118.75 489.82 876.68 1159.13 1124.41 1088.83 796.33 612.07 992.08 0 FALSE FALSE TRUE 987.6118209 504.9107736 924.0759726 1206.404332 1041.464514 1068.062382 827.0447149 681.7455747 951.1860425 0 0 AKEGVVAAAEK(ac)TK ddPTM_HeLa_CUDC101_4h_R1 2 AKEGVVAAAEKTK 13 2 D6RA31;E7EPV7;A0A669KB41;A0A669KBH5;P37840-2;P37840;H6UYS7;P37840-3 D6RA31 SNCA Alpha-synuclein 0 1 ; AKEGVVAAAEK(1)TK;AKEGVVAAAEK(1)TK 121.45 0.0048097 5720500 7853 8459.6 8835 8880.6 10436.9 8973.1 9919.8 13177.4 7069.5 5989.9 FALSE TRUE FALSE 6932.483244 8720.230249 9312.646824 9242.789253 9666.99068 8801.953068 10302.41001 14677.46195 6778.092218 5954.271808 1.164287333 1.464533453 1.564027831 1.552295486 1.623538695 1.478258526 1.730255242 2.465030557 1.138357877 1 12.53970937 -1 0.196347517 0.937030278 6.806623032 0.793492392 0.175903876 15.63863597 0.177787412 0.176946339 28.29419046 0.1 1 5.869592754 ANASPQK(ac)PLDLK ddPTM_HeLa_CUDC101_4h_R1 2 ANASPQKPLDLK 12 1 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;C9JQE8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 0 1 ; ANASPQK(1)PLDLK;ANASPQK(1)PLDLK 116.71 0.0028608 1816770 1525.08 1283.69 1350.01 1467.55 1475.82 1638.73 1406.91 2044.87 1201.22 1060.17 FALSE TRUE FALSE 1346.312434 1323.238967 1422.995624 1527.403032 1366.951699 1607.473956 1461.17499 2277.649735 1151.705203 1053.864062 1.277501039 1.255606881 1.350264874 1.449335913 1.29708541 1.52531433 1.386492853 2.161236746 1.092840381 1 10.04147307 -1 0.241689722 1.067574839 6.015383498 0.744164438 0.151478524 18.07860292 0.223471828 0.089529457 36.37011219 0.1 1 4.947808659 SDDYMPMS(ph)PASVSAPK ddPTM_HeLa_CUDC101_4h_R1 1 SDDYMPMSPASVSAPK 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 SDDYMPMS(1)PASVSAPK 133.87 0.00042935 18853000 2940.1 2717.4 2517.1 2406.2 3173.3 2941.1 2517.4 2851.5 2761.5 2594.2 TRUE FALSE FALSE 2595.465935 2801.119873 2653.18204 2504.335236 2939.211981 2885.003418 2614.496961 3176.103234 2647.669801 2578.769583 1.006474542 1.086223403 1.028855799 0.971135713 1.139773014 1.118751918 1.013854428 1.231635139 1.026718253 1 11.33246716 -1 0.295412213 0.999449494 2.452539638 0.441367234 0.05715463 30.22655691 0.386601896 0.020745016 23.40870495 0.1 1 1.453090145 VLDNYLTSPLPEEVDETSAEDEGVSQR ddPTM_HeLa_CUDC101_4h_R1 2 VLDNYLTSPLPEEVDETSAEDEGVSQR 27 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 0 ; ; 157.61 1.43E-11 83127000 6662.6 5187.7 5408.2 4599.2 5921.9 5781.6 5174.9 5708.6 5989.8 6034.9 FALSE FALSE TRUE 5881.620128 5347.526888 5700.583651 4786.775255 5485.053235 5671.325613 5374.497626 6358.443949 5742.897909 5999.004146 0.980432749 0.891402432 0.950254994 0.797928313 0.914327295 0.945377845 0.895898302 1.059916578 0.957308541 1 12.55050731 -7.37772783 5.122528924 0.991495918 0.918164117 0.14071242 0.062317092 0.239624239 9.13065301 0.010162719 0.011555131 4.19E-08 7.37772783 -0.073331801 VLDPFTIKPLDR ddPTM_HeLa_CUDC101_4h_R1 2 VLDPFTIKPLDR 12 1 P29401;P29401-2;A0A0B4J1R6 P29401 TKT Transketolase 0 0 ; ; 122.55 0.0036631 96853000 15450.8 13395.7 10945.8 13651.8 12813.3 13447.4 12521.8 10669.3 10860.5 12067 FALSE FALSE TRUE 13639.68065 13808.40564 11537.56306 14208.57941 11868.08839 13190.91325 13004.77002 11883.84999 10412.82559 11995.22495 1.137092527 1.15115854 0.961846327 1.18451963 0.989401069 1.099680357 1.084162246 0.990715058 0.868080894 1 13.55017259 -4.255271547 23.06716734 1.071109599 0.990714948 0.005425269 0.094605525 454.4158441 1699322.68 0.009983493 0.119074005 5.56E-05 4.255271547 -0.080394651 SESVVSGLDS(ph)PAK ddPTM_HeLa_CUDC101_4h_R1 2 SESVVSGLDSPAK 13 0 H7BYJ3;O14578;O14578-4;O14578-2 H7BYJ3 CIT Citron Rho-interacting kinase 1 0 SESVVS(0.011)GLDS(0.989)PAK;S(0.001)ES(0.012)VVS(0.007)GLDS(0.981)PAK ; 120.9 0.0021274 186820000 7197.9 5596.1 5876.2 6080.9 6752.3 6199.9 5439.4 4369.6 7511.5 6970.4 TRUE FALSE FALSE 6354.173073 5768.509208 6193.885147 6328.905386 6254.196281 6081.647237 5649.19948 4867.017601 7201.872791 6928.939751 0.917048394 0.832524082 0.893915284 0.913401706 0.902619521 0.877716859 0.815305037 0.702418808 1.039390304 1 12.7584189 -1 0.150453817 1.015383944 0.094276557 0.736477509 0.045940308 28.31917028 0.275245441 0.099755827 5.721729268 0.1 1 -0.921107386 SFEYS(ph)DCEEAFVDQSHLQANR ddPTM_HeLa_CUDC101_4h_R1 1 SFEYSDCEEAFVDQSHLQANR 21 0 K7EQI1;P58317 K7EQI1 ZNF121 Zinc finger protein 121 1 0 S(0.065)FEY(0.004)S(0.931)DCEEAFVDQSHLQANR 90.778 0.00041559 3726600 614.74 453.38 553.3 568.49 476.73 504.98 643.23 549.53 543.78 460.84 TRUE FALSE FALSE 542.6811091 467.3481004 583.2130716 591.6754794 441.5625777 495.3483479 668.0395966 612.0862739 521.3651582 458.0989032 1.184637434 1.020190394 1.273116062 1.291588946 0.963902281 1.081313106 1.458286828 1.336144378 1.138106105 1 8.839515298 -1 0.128704374 0.977647615 2.120075847 0.261742065 0.132782751 79.90619208 0.695432079 0.486730395 16.60435715 0.1 1 1.142428232 SGS(ph)YSYLEER ddPTM_HeLa_CUDC101_4h_R1 2 SGSYSYLEER 10 0 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIM2;H0YIS3;A0A0U1RQZ1 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 0 S(0.005)GS(0.995)YSYLEER;S(0.361)GS(0.638)YS(0.001)YLEER ; 177.04 1.25E-07 73123000 3267.3 3733.7 2962.5 2922.6 3469.3 3494.6 3666.3 4572.1 3230.9 2828.2 TRUE FALSE FALSE 2884.312047 3848.730871 3122.661711 3041.796261 3213.376651 3427.946327 3807.710419 5092.569383 3097.720934 2811.377741 1.02594255 1.368983903 1.110722926 1.081959289 1.142990003 1.219311897 1.354393031 1.811414137 1.101851555 1 11.45706159 -1 0.555846054 1.041494235 35.902428 0.788585857 0.105547674 38.02901061 0.312140592 0.020352743 1593.023214 0.1 1 34.86093376 SKPPPTYES(ph)EEEDK ddPTM_HeLa_CUDC101_4h_R1 4 SKPPPTYESEEEDK 14 1 O60885;O60885-2;O60885-3 O60885 BRD4 Bromodomain-containing protein 4 1 0 SKPPPT(0.41)YES(0.59)EEEDK;SKPPPTYES(1)EEEDK;SKPPPT(0.02)YES(0.98)EEEDK;S(0.003)KPPPTYES(0.997)EEEDK ;;; 193.54 1.31E-15 115460000 21291.8 17923.8 19660.3 19011.2 20094.2 19608.3 18755.1 19448.9 21950.2 18309.3 TRUE FALSE FALSE 18796.00748 18476.01103 20723.19529 19786.55891 18611.8909 19234.30435 19478.49049 21662.88416 21045.40347 18200.39547 1.032725224 1.015143383 1.138612363 1.087149944 1.022609148 1.056806946 1.070223475 1.190242498 1.156315724 1 14.15168218 -1 0.157711522 0.988228644 1.527084242 0 0.064351415 44.40253711 0.445121903 0.08198463 5.564466444 0.1 1 0.538855598 VLEANDGSGMLDEDEEDLQR ddPTM_HeLa_CUDC101_4h_R1 1 VLEANDGSGMLDEDEEDLQR 20 0 A0A2R8Y888;G3V4U9;A0A2R8Y3X7;G3V3R7;A0A087X1A8;A0A0A0MS38;D3VVH9;G3V3T6;A0A087WXY4;C9JQV6;G3V328;G3V2G1;E9PJN5;S4R399;G3V526;G3V2G2;F5H211;P54252-3;P54252-5;P54252-4;P54252;P54252-1 A0A2R8Y888 ATXN3 Ataxin-3 0 0 121.13 0.00013492 3111900 941.58 654.86 586.99 706.3 816.64 751.82 601.75 742.43 982.22 794.45 FALSE FALSE TRUE 831.2094197 675.0354604 618.7244549 735.1059669 756.3980942 737.4802861 624.9596991 826.9452302 941.7324759 789.7245761 1.052530775 0.854773273 0.783468659 0.930838408 0.957799867 0.933844923 0.791364126 1.047131184 1.19248217 1 9.625205777 -7.265085137 24.98459684 1.0248062 0.895960665 0.414638832 0.091716307 231.0052072 1583089.541 0.0123264 0.014393636 5.43E-08 7.265085137 -0.128845536 SKS(ph)EDMDNVQSK ddPTM_HeLa_CUDC101_4h_R1 4 SKSEDMDNVQSK 12 1 Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 Q6VMQ6-2 ATF7IP Activating transcription factor 7-interacting protein 1 1 0 S(0.006)KS(0.994)EDMDNVQSK;S(0.061)KS(0.939)EDMDNVQSK;S(0.38)KS(0.62)EDMDNVQSK;S(0.016)KS(0.984)EDMDNVQSK ;;; 166.79 0.00011963 243357000 16945.2 15781.3 14959 17074.4 17592.5 16913.7 16995.5 17129.8 16200.3 16184.7 TRUE FALSE FALSE 14958.90934 16267.50315 15767.72879 17770.76783 16294.73632 16591.09935 17651.02213 19079.78719 15532.51678 16088.43268 0.929792829 1.011130386 0.980066182 1.104567995 1.012823104 1.03124398 1.097125026 1.185932003 0.965446236 1 13.97373617 -1 0.370054661 0.968756597 3.848411228 0.71976126 0.038394452 23.89598207 0.293538923 0.01189048 49.52715422 0.1 1 2.879654631 DK(ac)WDQYK ddPTM_HeLa_CUDC101_4h_R1 2 DKWDQYK 7 1 J3QK89;Q8IWX8 J3QK89 CHERP Calcium homeostasis endoplasmic reticulum protein 0 1 ; DK(1)WDQYK;DK(1)WDQYK 95.099 0.025572 5706800 4423.5 4101.5 3963.2 4506.9 4741.1 4250.7 5438.6 6193.9 3466.9 3077.4 FALSE TRUE FALSE 3904.984036 4227.862354 4177.46258 4690.710862 4391.358499 4169.62498 5648.368624 6898.988539 3323.992915 3059.095488 1.276515902 1.382062891 1.365587507 1.533365297 1.435508802 1.363025442 1.846417886 2.255238049 1.086593383 1 11.57888943 -1 0.257103663 1.068505664 8.09270203 0.855732912 0.131382446 13.39547239 0.168284107 0.075714716 41.58143874 0.1 1 7.024196366 VLEDEEGSKDIELSDDPYDCIR ddPTM_HeLa_CUDC101_4h_R1 2 VLEDEEGSKDIELSDDPYDCIR 22 1 Q15024 Q15024 EXOSC7 Exosome complex component RRP42 0 0 ; ; 149.42 4.95E-07 18399600 4622.7 4276.2 4092.7 4130.5 4702.2 4895.7 3815.4 4237.3 5042.9 1531.43 FALSE FALSE TRUE 4080.834114 4407.944653 4313.963742 4298.959644 4355.328074 4802.322679 3962.561256 4719.657104 4835.029528 1522.320986 2.680666003 2.895542197 2.833806918 2.82395085 2.860978804 3.154605844 2.602973546 3.100303515 3.1760907 1 10.57205687 -9.05223088 0.519483198 0.715459455 2.940871246 0 0.690507182 0.166408919 0.069786412 0.182817459 0.037538918 8.87E-10 9.05223088 2.22541179 VLEDSDLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VLEDSDLKK 9 1 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 1 ; VLEDSDLK(1)K;VLEDSDLK(1)K 145.92 0.0015076 5657600 6146.3 2393.3 2504.7 2269.8 5987.6 5064.1 5702.7 5103 5057.8 3356.7 FALSE TRUE FALSE 5425.840031 2467.034736 2640.111658 2362.372255 5545.906677 4967.51073 5922.655049 5683.904893 4849.315343 3336.734199 1.626092972 0.739356086 0.791226241 0.707989343 1.662076254 1.488734323 1.774985568 1.703433523 1.453311847 1 11.70422105 -5.689958347 24.99855446 1.177414619 1.653676426 0.461359959 0.302452144 46.71217044 16335.24795 0.05375239 0.107504769 2.04E-06 5.689958347 0.476261808 VLELEDELQESR ddPTM_HeLa_CUDC101_4h_R1 1 VLELEDELQESR 12 0 Q08378;Q08378-2 Q08378 GOLGA3 Golgin subfamily A member 3 0 0 134.38 0.0078944 3297300 2141.8 1761.4 1879.9 1520.4 1899.6 1917.2 1761 1841.3 2369.5 2202.8 FALSE FALSE TRUE 1890.741451 1815.666646 1981.53308 1582.408484 1759.470293 1880.632604 1828.92236 2050.906149 2271.828207 2189.697648 0.863471472 0.829186006 0.904934561 0.722660722 0.803522027 0.858854923 0.835239679 0.936616136 1.037507717 1 11.09651596 -8.808070452 0.610236285 1.006796785 0.836273328 0.599150243 0.056252101 0.499029745 0.340757637 0.043486007 0.013172564 1.56E-09 8.808070452 -0.170523457 VLENIELNK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VLENIELNKK 10 1 B0QY90;B0QY89;Q9Y262-2;Q9Y262 B0QY90 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 1 ; VLENIELNK(1)K;VLENIELNK(1)K 114.89 0.0043523 1069620 881.39 393.51 246.87 197.13 727.27 442.182 656.39 396.26 751.82 455.57 FALSE TRUE FALSE 778.0748003 405.6335767 260.2165389 205.1698135 673.620741 433.7481151 681.7071822 441.3686367 720.8296614 452.8602494 1.718134461 0.895714687 0.574606712 0.453053263 1.487480391 0.957796838 1.505336764 0.974624373 1.591726504 1 8.8229221 -7.221155158 24.93055961 1.339119207 0.981696619 0.240027593 0.361342132 745.5277099 461382.7201 0.068919252 0.084407878 6.01E-08 7.221155158 -0.357422588 VLEQLEDLDSR ddPTM_HeLa_CUDC101_4h_R1 3 VLEQLEDLDSR 11 0 P26358;P26358-2;P26358-3 P26358 DNMT1 DNA (cytosine-5)-methyltransferase 1 0 0 ;; ;; 185.99 5.01E-10 5546800 4716.71 4346.7 3838.61 4150.8 4590.7 4127.38 4283.16 3915.52 5096.7 4924.5 FALSE FALSE TRUE 4163.824404 4480.616675 4046.136868 4320.087565 4252.053207 4048.657103 4448.362916 4361.24697 4886.611869 4895.208855 0.850591778 0.915306539 0.826550406 0.882513432 0.868615279 0.827065243 0.908717697 0.890921531 0.998243796 1 12.2571547 -9.316689468 0.803262608 1.009309934 0.869447535 0.755902413 0.028974033 0.290104048 0.299149317 0.026602861 0.005472602 4.82E-10 9.316689468 -0.139862399 SLS(ph)KSDSDLLTCSPTEDATMGSR ddPTM_HeLa_CUDC101_4h_R1 1 SLSKSDSDLLTCSPTEDATMGSR 23 1 Q92625;A0A3B3ISP1 Q92625 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 0 S(0.147)LS(0.455)KS(0.374)DS(0.024)DLLTCSPTEDATMGSR 87.237 0.00018431 64541000 1384 1426.7 1254.4 1377.7 1529.2 1413.2 1769.1 2518.2 1622.4 629.61 TRUE FALSE FALSE 1221.769618 1470.654936 1322.216658 1433.888561 1416.393963 1386.245565 1837.33478 2804.861709 1555.523985 625.8650517 1.95212948 2.349795586 2.112622609 2.291050694 2.263098025 2.214927261 2.935672434 4.481575863 2.485398379 1 9.289707808 -1 0.184291921 1.042823708 12.91049666 0.545086061 0.561759959 19.20425165 0.211239438 0.524828577 64.66401247 0.1 1 11.86767295 VLETAEDIQER ddPTM_HeLa_CUDC101_4h_R1 2 VLETAEDIQER 11 0 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2;A0A1B0GTB7;A0A0D9SFF6 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 0 0 ; ; 150.15 0.0036736 25654000 2412.84 2404.12 2427.17 2040.01 2505.67 2625.3 2416.9 2671 2512.65 2249.31 FALSE FALSE TRUE 2130.010553 2478.188088 2558.390152 2123.210425 2320.831716 2575.226777 2510.120643 2975.055843 2409.077503 2235.931004 0.952628032 1.108347298 1.144216949 0.949586737 1.037971079 1.151746978 1.122628846 1.330566926 1.077438212 1 11.12665996 -1 0.408439546 0.986682776 6.531683113 0.556621769 0.071566181 28.31383928 0.330015858 0.016368555 128.5262387 0.1 1 5.545000338 SPQPVCS(ph)PAGSEGTPK ddPTM_HeLa_CUDC101_4h_R1 2 SPQPVCSPAGSEGTPK 16 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 0 SPQPVCS(0.991)PAGS(0.009)EGTPK;SPQPVCS(0.975)PAGS(0.023)EGT(0.001)PK ; 166.36 1.56E-05 51016700 4695.6 4300.5 3754.1 3572.4 4584.4 4576.1 4662.4 4978 4620.7 3404.9 TRUE FALSE FALSE 4145.188886 4432.993308 3957.058002 3718.097913 4246.217945 4488.818517 4842.23033 5544.675398 4430.23279 3384.647503 1.224703276 1.309735594 1.169119679 1.098518504 1.254552488 1.326229249 1.430645385 1.638184004 1.308919994 1 11.72478988 -1 0.262237322 1.072461524 4.605706364 0.597722087 0.106514548 18.48104152 0.233146037 0.048885995 29.63657923 0.1 1 3.53324484 SPSLSPSPPS(ph)PLEKTPLGER ddPTM_HeLa_CUDC101_4h_R1 1 SPSLSPSPPSPLEKTPLGER 20 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SPSLSPS(0.031)PPS(0.966)PLEKT(0.002)PLGER 79.426 0.0023042 17114000 673.15 674.51 715.25 898.98 1476.2 850.02 816.92 1935 759.35 604.96 TRUE FALSE FALSE 594.2443774 695.2908536 753.9185785 935.6442901 1367.303667 833.8072847 848.428878 2155.272578 728.0492716 601.361671 0.988164704 1.156194163 1.253685785 1.555876164 2.273679439 1.38653214 1.410846283 3.583987278 1.2106679 1 9.232089108 -1 0.455951197 1.031213307 49.98783041 0.670555255 0.43230896 32.96941172 0.351331608 0.090587962 1520.720505 0.1 1 48.9566171 SPSPPT(ph)QHTGQPPGQPSAPSQLSAPR ddPTM_HeLa_CUDC101_4h_R1 4 SPSPPTQHTGQPPGQPSAPSQLSAPR 26 0 Q68EM7-7;Q68EM7-3;Q68EM7-6;Q68EM7-5;Q68EM7;I3L460;Q68EM7-2 Q68EM7-7 ARHGAP17 Rho GTPase-activating protein 17 1 0 S(0.267)PS(0.083)PPT(0.41)QHT(0.24)GQPPGQPSAPSQLSAPR;S(0.007)PS(0.007)PPT(0.949)QHT(0.036)GQPPGQPSAPSQLSAPR;S(0.008)PS(0.008)PPT(0.671)QHT(0.312)GQPPGQPSAPSQLSAPR;S(0.122)PS(0.122)PPT(0.72)QHT(0.036)GQPPGQPSAPSQLSAPR ;;; 122.39 6.04E-10 1078128900 1555.32 1386.36 1180.86 1471.67 1520.65 1544.43 1440.68 1673.56 1368.68 1322.58 TRUE FALSE FALSE 1373.007747 1429.072108 1244.700864 1531.691064 1408.474679 1514.972571 1496.24751 1864.071306 1312.262431 1314.713235 1.044340097 1.086983891 0.94674704 1.165038141 1.07131703 1.152321685 1.138078989 1.417853913 0.998135864 1 10.36053244 -1 0.518600301 1.023878541 14.15632841 0.789882045 0.057501122 30.7995207 0.281483014 0.010069372 447.0347205 0.1 1 13.13244987 SQGDEAGGHGEDRPEPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SQGDEAGGHGEDRPEPLSPK 20 1 Q9NZT2-2;Q9NZT2;A0A0A0MRN5 Q9NZT2-2 OGFR Opioid growth factor receptor 1 0 S(0.001)QGDEAGGHGEDRPEPLS(0.999)PK 45.679 0.038274 86441000 4260.7 3206.4 3510.2 3271.6 4409.4 3550.2 3029.9 2982.7 3944.7 4025.6 TRUE FALSE FALSE 3761.267205 3305.185383 3699.97203 3405.029989 4084.127347 3482.48585 3146.764258 3322.238512 3782.097796 4001.655552 0.939927776 0.825954493 0.924610322 0.850905318 1.020609419 0.870261272 0.786365597 0.830216011 0.94513327 1 11.96638128 -1 0.073268459 1.131725653 0.333765485 0.317708046 0.061447523 141.8222684 0.771641704 1.432512844 11.65108316 0.1 1 -0.797960168 VLGEK(ac)GK ddPTM_HeLa_CUDC101_4h_R1 2 VLGEKGK 7 1 P14618;B4DNK4;P14618-3;P14618-2;H3BTN5;H3BQ34;H3BR70 P14618 PKM Pyruvate kinase PKM;Pyruvate kinase 0 1 ; VLGEK(1)GK;VLGEK(1)GK 109.86 0.0082377 12014200 7149.3 8959.5 9388.5 8547.2 13856 7734.4 7762.4 5113.7 15968.1 12671.3 FALSE TRUE FALSE 6311.269892 9235.531575 9896.070709 8895.79176 12833.87049 7586.879206 8061.798368 5695.822938 15309.88816 12595.93054 0.501056263 0.733215505 0.785656183 0.706243316 1.018890223 0.602327806 0.64003198 0.452195486 1.21546305 1 13.62067009 -9.542938868 1.307547172 0.999995906 0.669813048 0.485807411 0.166181566 0.382736222 1.172115517 0.11157815 0.026509482 2.86E-10 9.542938868 -0.330182858 VLGPCSDILK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 VLGPCSDILKR 11 1 P10644 P10644 PRKAR1A "cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed" 0 1 ; VLGPCSDILK(1)R;VLGPCSDILK(1)R 152.11 0.00012589 1608010 515.01 130.72 201.001 163.9 280.77 322.8 366.71 467.31 400.82 352.19 FALSE TRUE FALSE 454.6413085 134.7473283 211.8677221 170.5845504 260.0581565 316.6431278 380.8541275 520.5066815 384.2980299 350.0951582 1.298622097 0.384887723 0.605171814 0.487251955 0.742821345 0.904448749 1.087858882 1.486757726 1.097695929 1 8.451603299 -7.297794954 24.98857973 1.141015989 0.804813127 0.186439646 0.303739157 722.6785175 496722.8862 0.056281027 0.064360812 5.04E-08 7.297794954 -0.336202862 DSEKENQIPEEAGSSGLGK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 2 DSEKENQIPEEAGSSGLGKAK 21 2 H0YKX3;H0YMA4;A0A0U1RQM0;Q15004 H0YKX3 KIAA0101 PCNA-associated factor 0 1 ; DSEKENQIPEEAGSSGLGK(1)AK;DSEKENQIPEEAGSSGLGK(1)AK 199.97 1.74E-43 2443900 964.79 1500.33 1915.03 2548.76 2841.12 2456.22 2390.89 4313.8 523.12 724.47 FALSE TRUE FALSE 851.6987787 1546.553389 2018.562314 2652.709449 2631.536238 2409.371696 2483.107428 4804.865555 501.5567722 720.1608202 1.182650812 2.147511147 2.802932703 3.683495929 3.654095258 3.345602299 3.447990169 6.671934129 0.696451068 1 9.492175303 -1 0.201872758 0.548895868 25.7707865 0.837877639 0.67237908 14.69087319 0.169275583 0.658700547 118.4685461 0.1 1 25.22189063 up SSEGGVGVGPGGGDEPPTS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 SSEGGVGVGPGGGDEPPTSPR 21 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 SSEGGVGVGPGGGDEPPT(0.435)S(0.565)PR;SSEGGVGVGPGGGDEPPT(0.001)S(0.999)PR;SSEGGVGVGPGGGDEPPT(0.013)S(0.987)PR ;; 240.91 2.58E-46 84818000 10238.9 10167.2 9612.6 9771.7 11395.2 9768.4 10616.4 10327.4 9749.3 9805.2 TRUE FALSE FALSE 9038.711663 10480.43938 10132.28623 10170.23216 10554.5988 9582.084045 11025.8781 11503.02947 9347.429728 9746.878234 0.927344268 1.075261138 1.039541686 1.043434823 1.082869668 0.983092618 1.131221488 1.180175764 0.959017801 1 13.25072451 -1 0.303849902 0.968485481 2.814254089 0.586384937 0.047740557 25.79065499 0.329897938 0.02002817 26.35059123 0.1 1 1.845768609 SSETGAFRVPS(ph)PGMEEAGCSR ddPTM_HeLa_CUDC101_4h_R1 2 SSETGAFRVPSPGMEEAGCSR 21 1 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 0 SSETGAFRVPS(0.986)PGMEEAGCS(0.014)R;SSETGAFRVPS(1)PGMEEAGCSR ; 90.762 0.00036461 64031000 2872.3 2949 2662.3 2837.2 3903.1 2780.3 2832.1 3609 2885.4 2241.09 TRUE FALSE FALSE 2535.613348 3039.855195 2806.231991 2952.913279 3615.176089 2727.27041 2941.335046 4019.833972 2766.462591 2227.759897 1.138189691 1.364534481 1.259665368 1.325507872 1.622785334 1.224220982 1.320310618 1.804428735 1.241813624 1 11.12137804 -1 0.107585903 0.778946506 3.243440283 0.427028226 0.166135483 50.47505332 0.382172702 0.919797225 18.51740514 0.1 1 2.464493778 SSS(ph)EITLSECDAEDAGEPR ddPTM_HeLa_CUDC101_4h_R1 2 SSSEITLSECDAEDAGEPR 19 0 O60292 O60292 SIPA1L3 Signal-induced proliferation-associated 1-like protein 3 1 0 S(0.006)S(0.006)S(0.748)EIT(0.225)LS(0.016)ECDAEDAGEPR;S(0.01)S(0.278)S(0.712)EITLSECDAEDAGEPR ; 192.23 2.91E-12 29815000 1561.08 1230.9 1230.28 1199.17 1243.15 1557.46 1353.52 1620.25 1398.39 1022.44 TRUE FALSE FALSE 1378.092569 1268.82257 1296.792658 1248.077336 1151.445301 1527.754045 1405.72572 1804.692711 1340.747772 1016.358481 1.355911909 1.248400632 1.275920536 1.227989296 1.132912572 1.503164556 1.383100299 1.775645841 1.319168184 1 9.989193632 -1 0.057934058 0.518306744 2.977899898 0.367077805 0.158977947 201.740747 0.884233461 7.991511032 42.54830404 0.1 1 2.459593154 SSS(ph)PATEQSWMENDFDELREEGFRR ddPTM_HeLa_CUDC101_4h_R1 2 SSSPATEQSWMENDFDELREEGFRR 25 2 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 0 S(0.134)S(0.134)S(0.703)PAT(0.028)EQS(0.001)WMENDFDELREEGFRR;S(0.163)S(0.163)S(0.656)PAT(0.017)EQSWMENDFDELREEGFRR ; 66.702 0.00065392 21247800 1560.19 1347.57 1527.64 1391.65 1745.66 1561.45 1534.59 1830.26 1637.34 1429.92 TRUE FALSE FALSE 1377.306893 1389.087034 1610.228839 1448.407502 1616.88614 1531.667943 1593.77965 2038.6094 1569.848152 1421.414772 0.96896903 0.977256647 1.132835307 1.018990045 1.13751888 1.077565798 1.121262901 1.434211491 1.104426507 1 10.47311188 -1 0.526924823 0.993686298 16.33429359 0.722847615 0.067394801 31.72816377 0.283362551 0.010878249 548.4577778 0.1 1 15.34060729 VLIAAHGNSLR ddPTM_HeLa_CUDC101_4h_R1 2 VLIAAHGNSLR 11 0 P18669;P15259 P18669 PGAM1;PGAM2 Phosphoglycerate mutase 1;Phosphoglycerate mutase 2 0 0 ; ; 128.81 0.00066595 3288500 3092.8 1413.8 1010.92 1291.25 2188.1 1731.29 1474.82 1339.28 1084.17 532.65 FALSE FALSE TRUE 2730.266672 1457.357502 1065.573393 1343.912756 2026.688222 1698.268528 1531.704301 1491.738222 1039.480054 529.4817741 5.156488487 2.752422413 2.012483612 2.538166226 3.827682692 3.207416404 2.892836687 2.817355185 1.96320271 1 9.048437214 -5.848252927 19.27536094 2.885247282 3.169509593 0.02754681 1.05347559 28.04320841 6202.055149 0.233989048 0.424143938 1.42E-06 5.848252927 0.284262312 SSSGESLAQS(ph)PDSSK ddPTM_HeLa_CUDC101_4h_R1 2 SSSGESLAQSPDSSK 15 0 Q9H7U1-2;Q9H7U1;Q9H7U1-3 Q9H7U1-2 CCSER2 Serine-rich coiled-coil domain-containing protein 2 1 0 SSSGES(0.013)LAQS(0.968)PDS(0.017)S(0.002)K;SSS(0.001)GES(0.041)LAQS(0.957)PDSSK ; 247.5 1.03E-55 27742000 10514.2 9637.5 8730.4 9246.6 10580.4 8753.8 8290.7 7424.1 10082.9 10378.9 TRUE FALSE FALSE 9281.741414 9934.419952 9202.391832 9623.716315 9799.904971 8586.83585 8610.475076 8269.229535 9667.278594 10317.16584 0.899640614 0.962902032 0.891949589 0.93278682 0.949864054 0.832286306 0.834577558 0.801502046 0.937009131 1 13.33275909 -1 0.162205862 0.994734819 0.270720663 0.670678563 0.035066407 28.92262387 0.295164964 0.067054394 5.044892465 0.1 1 -0.724014156 VLITTDLLAR ddPTM_HeLa_CUDC101_4h_R1 1 VLITTDLLAR 10 0 P60842;Q14240-2;Q14240;E7EQG2 P60842 EIF4A1;EIF4A2 "Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed" 0 0 124.08 0.027234 1059200 556.62 426.38 300.77 418.95 495.83 451.21 351.79 451.9 257.72 276.22 FALSE FALSE TRUE 491.3738474 439.5162624 317.030536 436.0365919 459.2536087 442.603921 365.3586581 503.3424694 247.0966725 274.5770312 1.789566466 1.600702945 1.154614188 1.588030106 1.672585674 1.61194809 1.330623529 1.833155771 0.899917489 1 8.101067136 -9.447120256 1.138488924 0.994861256 1.578646378 0.615099759 0.194831103 0.302658399 0.691817033 0.141524598 0.033982567 3.57E-10 9.447120256 0.583785122 SSSPAGET(ph)EGDREPQARPGEGTAPLPPPGQK ddPTM_HeLa_CUDC101_4h_R1 2 SSSPAGETEGDREPQARPGEGTAPLPPPGQK 31 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 0 S(0.102)S(0.102)S(0.304)PAGET(0.484)EGDREPQARPGEGT(0.007)APLPPPGQK;S(0.015)S(0.015)S(0.047)PAGET(0.842)EGDREPQARPGEGT(0.081)APLPPPGQK ; 76.55 3.72E-05 137738800 2240.01 1952.66 2012 1962.82 2206.65 1980.36 2245.82 2067.2 2183.18 1827.45 TRUE FALSE FALSE 1977.439423 2012.81914 2120.774806 2042.872284 2043.869826 1942.587933 2332.44203 2302.521692 2093.188396 1816.580246 1.088550549 1.108026548 1.167454513 1.12457035 1.125119482 1.069365329 1.283974124 1.26750343 1.152268611 1 10.82700938 -1 0.131566287 0.961211735 1.939289184 0.351955369 0.065691517 33.5990495 0.297200754 0.167675331 6.133076065 0.1 1 0.978077449 VLLGEEEALEDDSESR ddPTM_HeLa_CUDC101_4h_R1 2 VLLGEEEALEDDSESR 16 0 P42858 P42858 HTT Huntingtin 0 0 ; ; 280.57 4.55E-117 5112800 2661.8 2181.1 1717.06 1946.95 1950.23 2103.9 1895.69 1484.13 1799.94 2156 FALSE FALSE TRUE 2349.787839 2248.297106 1809.889457 2026.355036 1806.365418 2063.771613 1968.807398 1653.07736 1725.745711 2143.176016 1.096404505 1.04904921 0.844489414 0.945491654 0.842845107 0.962950125 0.918640085 0.771321323 0.805228175 1 11.06553463 -6.77065351 24.86922077 1.047060734 0.887597277 0.125231783 0.095137312 87.82160116 237032.8427 0.009675611 0.012815388 1.70E-07 6.77065351 -0.159463457 STELKTEIKEEEDQPSTSATQS(ph)SPAPGQSK ddPTM_HeLa_CUDC101_4h_R1 1 STELKTEIKEEEDQPSTSATQSSPAPGQSK 30 2 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 1 0 STELKTEIKEEEDQPS(0.001)T(0.003)S(0.015)AT(0.098)QS(0.45)S(0.433)PAPGQSK 78.618 4.77E-06 31515000 2600.7 3043.8 2526.3 2395.6 3401.7 3011.2 2961 4398.7 3240.2 2130.5 TRUE FALSE FALSE 2295.849888 3137.57587 2662.87942 2493.302923 3150.763368 2953.766377 3075.206762 4899.430228 3106.637585 2117.827691 1.084058867 1.481506679 1.257363586 1.177292625 1.487733578 1.394715155 1.452057112 2.313422498 1.466898179 1 11.0483695 -1 0.373623601 1.053397632 15.70540568 0.609110106 0.215161318 18.95593619 0.231910017 0.045778107 202.4421361 0.1 1 14.65200805 STS(ph)QGSINSPVYSR ddPTM_HeLa_CUDC101_4h_R1 2 STSQGSINSPVYSR 14 0 O14639-3;O14639-5;J3QSX6;O14639-4;H0Y7N6;F6XFR5;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639;A0A494C1P1;A0A494C1G0 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 1 0 S(0.019)T(0.019)S(0.89)QGS(0.071)INSPVYSR;S(0.044)T(0.078)S(0.878)QGS(0.001)INSPVYSR ; 249.36 5.33E-56 294070000 3000.9 3000.2 2879 2860.4 3414.5 3594.5 3714.2 4294.7 2781.2 2617.2 TRUE FALSE FALSE 2649.139051 3092.632606 3034.647448 2977.059476 3162.619138 3525.940901 3857.457938 4783.591288 2666.557759 2601.632778 1.018260176 1.188727568 1.166439581 1.144304262 1.215628572 1.355280012 1.482706541 1.838688123 1.024955475 1 11.34520162 -1 0.358300339 1.002765787 11.24276615 0.961408011 0.048172158 6.880415579 0.085547736 0.014229687 48.59645676 0.1 1 10.24000036 SVGKVEPSSQSPGRS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 SVGKVEPSSQSPGRSPR 17 2 X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2;K7EKH8;K7EIZ7 X6RM00 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 0 S(0.001)VGKVEPS(0.009)S(0.009)QS(0.006)PGRS(0.974)PR;SVGKVEPSSQS(0.006)PGRS(0.993)PR ; 64.5 0.015728 15981500 4478.1 5738.3 5591 5847.6 8766.4 5863.6 6314.2 11718.6 6702.9 4220.8 TRUE FALSE FALSE 3953.183906 5915.090221 5893.266372 6086.090403 8119.720137 5751.761599 6557.740809 13052.59806 6426.603625 4195.694494 0.942200132 1.40980003 1.404598543 1.450556139 1.935250564 1.370872357 1.562969091 3.110950541 1.531713912 1 12.03469392 -1 0.355357366 0.986513525 21.96278568 0.616840698 0.357489208 20.46163725 0.255103449 0.090150931 292.8333958 0.1 1 20.97627216 VLNNMEIGTSLFDEEGAK ddPTM_HeLa_CUDC101_4h_R1 4 VLNNMEIGTSLFDEEGAK 18 0 P00558;P00558-2 P00558 PGK1 Phosphoglycerate kinase 1 0 0 ;;; ;;; 222.75 2.70E-32 75028100 4958.71 4322.93 4496.7 4506.25 4929.3 4856.4 4047.38 4470.74 4493.99 4730.78 FALSE FALSE TRUE 4377.457531 4456.114349 4739.805204 4690.034353 4565.67536 4763.772261 4203.488802 4979.67097 4308.74583 4702.64111 0.930850862 0.947576956 1.007902813 0.997319218 0.970874718 1.012999323 0.893857027 1.05890942 0.916239562 1 12.19925552 -6.768227235 24.99586018 0.964951161 0.986392629 0.128448953 0.045186568 418.0385732 1539397.482 0.007048086 0.009382128 1.71E-07 6.768227235 0.021441468 SVPGTTSSPLVGDIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 SVPGTTSSPLVGDISPK 17 0 Q9UQR0;H0Y6S1;B4DRC2;Q9UQR0-2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 0 SVPGTTSSPLVGDIS(1)PK;SVPGTTSSPLVGDIS(1)PK;SVPGTT(0.019)S(0.012)S(0.012)PLVGDIS(0.957)PK ;; 236.27 1.58E-43 84800600 14165.4 12074.7 11771.2 12208.5 13069.5 12349.4 10945 10241 13513.8 13286.4 TRUE FALSE FALSE 12504.95329 12446.70719 12407.58668 12706.4154 12105.38902 12113.85577 11367.15232 11406.79404 12956.75544 13207.3719 0.94681617 0.942406051 0.939444029 0.962069933 0.916563046 0.917204108 0.86066724 0.863668724 0.981024502 1 13.6890558 -1 0.161400926 1.005271977 0.432332593 0.872009198 0.015396001 16.31247935 0.165954269 0.030292245 2.237556011 0.1 1 -0.572939384 SYVTTST(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SYVTTSTR 8 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SYVTTS(0.002)T(0.998)R 117.53 0.039275 15373000 3638.5 3241.3 3452.7 3269.4 3729.1 3610.1 3189.3 3640.2 2624.2 3344.6 TRUE FALSE FALSE 3212.000546 3341.160611 3639.363406 3402.740264 3454.011722 3541.243357 3312.312369 4054.585654 2516.029365 3324.70617 0.966100576 1.004949141 1.094642119 1.023470974 1.038892325 1.065129721 0.996272212 1.219532027 0.756767436 1 11.69901113 -1 0.578713964 0.994873047 10.99667873 0.359822552 0.088033632 74.16072882 0.566780268 0.008457856 934.9537562 0.1 1 10.00180568 T(ph)ASESISNLSEAGSIK ddPTM_HeLa_CUDC101_4h_R1 1 TASESISNLSEAGSIK 16 0 J3KP58;P30622-2;P30622-1;P30622;F5H1T5;F5H6A0 J3KP58 CLIP1 CAP-Gly domain-containing linker protein 1 1 0 T(0.267)AS(0.267)ES(0.009)IS(0.115)NLS(0.171)EAGS(0.171)IK 178.02 9.39E-07 26556000 1949.7 1670.2 1723.4 1839.7 1900.4 1846.5 1928.9 2157.7 1802.4 1606.6 TRUE FALSE FALSE 1721.159122 1721.656882 1816.572217 1914.730918 1760.211278 1811.281089 2003.298319 2403.323846 1728.104309 1597.043872 1.077715617 1.078027293 1.137459183 1.198921928 1.102168393 1.134146106 1.254379015 1.504857749 1.082064394 1 10.64118823 -1 0.417229007 1.040084972 8.845686761 0.847866015 0.052175938 18.27545794 0.209919437 0.013257759 120.0302967 0.1 1 7.805601788 TELESTIFGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 4 TELESTIFGSPR 12 0 Q9UQK1 Q9UQK1 PPP1R3C Protein phosphatase 1 regulatory subunit 3C 1 0 TELESTIFGS(1)PR;TELESTIFGS(1)PR;TELESTIFGS(1)PR;TELES(0.001)TIFGS(0.999)PR ;;; 166.62 2.65E-05 46582900 4195.6 4963.77 5305.24 5378 5386.2 4525.9 6006.6 7145.9 3955.63 4461.03 TRUE FALSE FALSE 3703.798128 5116.69787 5592.057322 5597.338086 4988.870757 4439.575998 6238.276574 7959.360371 3792.577257 4434.495595 0.835224221 1.153839881 1.261035715 1.262226552 1.125014255 1.001145655 1.406761252 1.794873893 0.85524434 1 12.1145543 -1 0.408700122 0.950088266 14.53483345 0.697367702 0.149056905 28.54369029 0.332556538 0.040289317 317.6953382 0.1 1 13.58474518 TFCPPPLPKPSSTTPTPLVSETGGNSPS(ph)DKVDNELK ddPTM_HeLa_CUDC101_4h_R1 1 TFCPPPLPKPSSTTPTPLVSETGGNSPSDKVDNELK 36 2 A0A3B3IRW6;Q2KHR3;Q2KHR3-2;H0YCQ7 A0A3B3IRW6 QSER1 Glutamine and serine-rich protein 1 1 0 TFCPPPLPKPS(0.015)S(0.015)T(0.054)T(0.047)PT(0.173)PLVS(0.173)ET(0.173)GGNS(0.173)PS(0.179)DKVDNELK 43.728 0.011161 72979000 2889.7 2523.5 2227 2191 2533 3076.1 2682.6 2899.3 2416.9 1998.2 TRUE FALSE FALSE 2550.973747 2601.246044 2347.398356 2280.35845 2346.145636 3017.428518 2786.068781 3229.344593 2317.274359 1986.314618 1.284274769 1.309584102 1.181785773 1.148034873 1.181155098 1.519109053 1.402632169 1.625797124 1.16662 1 10.95587844 -1 0.136091326 0.97296439 2.894917149 0.632741803 0.108531608 38.95385628 0.353128643 0.356383752 14.54224529 0.1 1 1.921952759 THSDAS(ph)DDEAFTTSK ddPTM_HeLa_CUDC101_4h_R1 2 THSDASDDEAFTTSK 15 0 H0YK04;Q13017-2;Q13017 H0YK04 ARHGAP5 Rho GTPase-activating protein 5 1 0 T(0.001)HSDAS(0.999)DDEAFTTSK;THSDAS(1)DDEAFTTSK ; 261.39 6.21E-70 35411000 6012.5 4448.6 5688 5008.3 5445.7 5064.8 4430.2 3989.5 5573.3 5873.3 TRUE FALSE FALSE 5307.723864 4585.656093 5995.510485 5212.560122 5043.98156 4968.197379 4601.074298 4443.648554 5343.566215 5838.36535 0.909111292 0.785434932 1.026915947 0.892811568 0.863937294 0.850956917 0.788075775 0.761111765 0.915250399 1 12.51134878 -1 0.132734638 1.028129152 0.164031899 0.436249808 0.063205218 44.22572793 0.393736945 0.191520635 7.206632787 0.1 1 -0.864097253 TIS(ph)DGTISASK ddPTM_HeLa_CUDC101_4h_R1 2 TISDGTISASK 11 0 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 0 T(0.037)IS(0.95)DGT(0.012)IS(0.001)ASK;T(0.004)IS(0.509)DGT(0.449)IS(0.038)ASK ; 154.28 0.00031804 528490000 8675.2 7695 7788.8 7703.9 9223.1 9037.3 9734.6 8642.7 7381.5 7060.2 TRUE FALSE FALSE 7658.306207 7932.073829 8209.886088 8018.098341 8542.730288 8864.92856 10110.06678 9626.550033 7077.231446 7018.205616 1.091205733 1.130213941 1.169798455 1.142471278 1.217224281 1.263133206 1.440548672 1.371654032 1.008410388 1 12.7768865 -1 0.1934298 0.980779179 3.1271012 0.919215188 0.038816675 8.929037993 0.100749385 0.038562125 5.792271576 0.1 1 2.14632202 VLPSEQESTK(ac)KPYR ddPTM_HeLa_CUDC101_4h_R1 2 VLPSEQESTKKPYR 14 2 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 0 1 ; VLPSEQESTK(0.95)K(0.05)PYR;VLPSEQESTK(0.983)K(0.017)PYR 155.14 0.00052586 21304000 3185.6 2886.2 2998.3 3624.6 3459.2 3430.8 3365.8 3683.1 2048.34 2112.33 FALSE TRUE FALSE 2812.188797 2975.120401 3160.397167 3772.426855 3204.021708 3365.363206 3495.620033 4102.369216 1963.906558 2099.765767 1.339286906 1.416882039 1.505118912 1.796594131 1.52589482 1.602732676 1.664766655 1.953727068 0.935297922 1 11.03601269 -6.759975207 0.103593406 0.354067591 2.574100619 0.888195695 0.101811403 2.971232163 0.192513691 1.698972665 2.242688953 1.74E-07 6.759975207 2.220033028 TLHCEGTEINS(ph)DDEQESKEVEETATAK ddPTM_HeLa_CUDC101_4h_R1 4 TLHCEGTEINSDDEQESKEVEETATAK 27 1 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 TLHCEGTEINS(1)DDEQESKEVEETATAK;TLHCEGTEINS(0.998)DDEQES(0.002)KEVEETATAK;TLHCEGTEINS(0.999)DDEQES(0.001)KEVEETATAK;TLHCEGT(0.1)EINS(0.897)DDEQES(0.003)KEVEETATAK ;;; 121.39 1.00E-10 942289000 7812.6 7715.81 7292.95 7039.14 8835.5 8332.6 7678.04 8290.21 7962.59 5989.4 TRUE FALSE FALSE 6896.818871 7953.524961 7687.228937 7326.226555 8183.722768 8173.669538 7974.184575 9233.933996 7634.36867 5953.774782 1.158394317 1.335879379 1.291152121 1.230517919 1.374543557 1.37285501 1.339349382 1.550937738 1.282273675 1 12.53958893 -1 0.064729241 0.52311364 2.94319672 0.388435279 0.10822846 61.45266124 0.298603855 2.152889011 13.84814099 0.1 1 2.42008308 VLQATVVAVGSGSK ddPTM_HeLa_CUDC101_4h_R1 2 VLQATVVAVGSGSK 14 0 P61604;B8ZZL8;S4R3N1 P61604 HSPE1;HSPE1-MOB4 "10 kDa heat shock protein, mitochondrial" 0 0 ; ; 234.82 1.00E-33 10416900 4223.2 3927.7 3693.4 4137 4004.6 4519.4 3776 3532.2 3543.5 3639.3 FALSE FALSE TRUE 3728.162898 4048.707782 3893.076376 4305.724742 3709.188636 4433.199975 3921.641585 3934.29137 3397.43543 3617.653282 1.030547321 1.119153071 1.076133082 1.190198288 1.025302412 1.225435283 1.084029142 1.087525825 0.939126877 1 11.82083843 -7.337912683 1.646745748 1.010390685 1.119103874 0.475149344 0.059099562 0.221873988 1.148085987 0.009520515 0.010964629 4.59E-08 7.337912683 0.10871319 TQPSSGVDSAVGTLPATS(ph)PQSTSVQAK ddPTM_HeLa_CUDC101_4h_R1 2 TQPSSGVDSAVGTLPATSPQSTSVQAK 27 0 Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 Q13428 TCOF1 Treacle protein 1 0 TQPSSGVDSAVGTLPAT(0.445)S(0.552)PQS(0.001)T(0.001)SVQAK;TQPSSGVDSAVGTLPAT(0.204)S(0.576)PQS(0.073)T(0.108)S(0.039)VQAK ; 174.19 5.00E-14 37811000 9897.3 8752.1 8009.7 7786.3 9362 9375.7 7438.6 6692.7 9311 9332.5 TRUE FALSE FALSE 8737.153497 9021.741827 8442.72861 8103.858969 8671.383912 9196.874143 7725.509294 7454.569915 8927.196639 9276.989875 0.941809101 0.972485898 0.910071987 0.873544014 0.934719562 0.991364038 0.832760346 0.803554818 0.962294533 1 13.17944105 -1 0.22025017 0.989186256 0.121268902 0.545006054 0.042716913 28.16615831 0.337091038 0.033270791 8.775394787 0.1 1 -0.867917354 TQTPPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_HeLa_CUDC101_4h_R1 4 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 Q14247;Q14247-3;Q14247-2;H0YEV2;H0YCD9 Q14247 CTTN Src substrate cortactin 1 0 TQTPPVSPAPQPT(0.002)EERLPS(0.474)S(0.474)PVY(0.049)EDAAS(0.001)FK;TQTPPVSPAPQPT(0.01)EERLPS(0.463)S(0.463)PVY(0.064)EDAASFK;T(0.001)QT(0.001)PPVS(0.002)PAPQPT(0.023)EERLPS(0.417)S(0.417)PVY(0.124)EDAAS(0.015)FK;TQTPPVSPAPQPT(0.002)EERLPS(0.475)S(0.475)PVY(0.048)EDAASFK ;;; 82.169 4.61E-07 1697984000 8147.99 8363.45 8407.39 7939.59 10140.41 8476.99 9793.96 12520.9 8416.29 7267.66 TRUE FALSE FALSE 7192.894964 8621.117981 8861.918934 8263.400798 9392.372157 8315.305539 10171.71632 13946.22864 8069.366964 7224.431635 0.995634719 1.193328198 1.226659671 1.143813274 1.300084578 1.150997886 1.407960769 1.930425721 1.116955267 1 12.81866838 -1 0.45390078 1.018030748 20.7277622 0.834821106 0.104416368 19.90042721 0.212990879 0.022606661 367.4522975 0.1 1 19.70973145 TRS(ph)MDDLLSACDTSSPLTR ddPTM_HeLa_CUDC101_4h_R1 1 TRSMDDLLSACDTSSPLTR 19 1 J3QR65;Q9NYA4 J3QR65 MTMR4 Myotubularin-related protein 4 1 0 T(0.126)RS(0.853)MDDLLS(0.021)ACDTSSPLTR 131.31 0.00020074 8867700 1101.7 726.16 856.59 900.19 1123.2 908.66 1155.2 1298.3 873.34 576.78 TRUE FALSE FALSE 972.5603961 748.5321289 902.8998464 936.9036392 1040.343774 891.3288244 1199.756451 1446.093224 837.3405555 573.3492869 1.696279072 1.305542967 1.574781494 1.634088784 1.814502603 1.55460004 2.092540234 2.522185441 1.460437075 1 9.163270493 -1 0.113773274 0.804965767 5.16492645 0.669350653 0.228236896 43.36113562 0.343319639 1.269677445 29.90391069 0.1 1 4.359960682 TSETSISPPGSS(ph)IGSPNR ddPTM_HeLa_CUDC101_4h_R1 1 TSETSISPPGSSIGSPNR 18 0 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 TSETSIS(0.036)PPGS(0.313)S(0.646)IGS(0.005)PNR 139.49 8.26E-05 21475000 1504.8 1437.4 1316.8 1275.6 1720.5 1359.2 1449.1 1746.2 1280.4 1294.4 TRUE FALSE FALSE 1328.409625 1481.68459 1387.990191 1327.624482 1593.582143 1333.275525 1504.992272 1944.98035 1227.62137 1286.700851 1.032415284 1.15153774 1.078720193 1.031805085 1.238502439 1.036196971 1.169652038 1.511602598 0.954084525 1 10.32946096 -1 0.735303131 1.036759936 74.15332553 0.742784489 0.078069962 114.5587378 0.492579397 0.012261883 13862.35168 0.1 1 73.11656559 TSPSGGTWSSVVSGVPRLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 TSPSGGTWSSVVSGVPRLSPK 21 1 Q99700;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;Q99700-2;Q99700-4;A0A5F9ZHH4;A0A5F9ZHX3 Q99700 ATXN2 Ataxin-2 1 0 TSPSGGTWSSVVSGVPRLS(1)PK;TSPSGGTWSSVVSGVPRLS(1)PK ; 126.16 3.53E-07 193849000 2410.2 2278 1855.72 2008.6 2915.2 2452.4 2191.49 2861.4 2529.2 1839.96 TRUE FALSE FALSE 2127.68001 2348.18248 1956.045836 2090.51939 2700.151504 2405.624556 2276.016503 3187.13021 2424.945305 1829.015836 1.163292284 1.283850273 1.069452652 1.142975008 1.476286564 1.315256275 1.244394094 1.742538335 1.325819743 1 10.83685185 -1 0.215502784 1.018255178 3.919097634 0.425409767 0.153877763 22.76012058 0.269994569 0.096244916 23.02146722 0.1 1 2.900842455 TST(ph)PVIMEGVQEETDTR ddPTM_HeLa_CUDC101_4h_R1 2 TSTPVIMEGVQEETDTR 17 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 T(0.006)S(0.124)T(0.87)PVIMEGVQEETDTR;T(0.007)S(0.007)T(0.985)PVIMEGVQEETDTR ; 137.27 0.0010567 38524000 3634.7 3807.6 2724.15 2907.6 3407.8 3383.4 3584.2 3187.8 4028.9 3039.6 TRUE FALSE FALSE 3208.645976 3924.907643 2871.425789 3026.184496 3156.413383 3318.867282 3722.443795 3550.686266 3862.827037 3021.520324 1.061930959 1.29898436 0.95032483 1.001543651 1.044644101 1.098409716 1.231977083 1.175132346 1.278438211 1 11.56105893 -1 0.321229501 1.029867541 2.850146135 0 0.122753818 53.14506305 0.677220254 0.032129478 57.69813575 0.1 1 1.820278594 VATLNSEEESDPPT(ph)YKDAFPPLPEK ddPTM_HeLa_CUDC101_4h_R1 2 VATLNSEEESDPPTYKDAFPPLPEK 25 1 Q00341;Q00341-2;A0A024R4E5;C9JHZ8;C9JIZ1;C9J5E5;C9JZI8;C9JES8;C9JK79;C9JHS7;C9JT62;C9JQ82;C9JHN6;C9JEJ8;C9JBS3 Q00341 HDLBP Vigilin 1 0 VAT(0.003)LNS(0.079)EEES(0.079)DPPT(0.451)Y(0.387)KDAFPPLPEK;VAT(0.001)LNS(0.028)EEES(0.017)DPPT(0.509)Y(0.446)KDAFPPLPEK ; 68.552 0.00072528 40442000 2376.67 2712.4 2422.96 2625.82 3655.8 2594.87 2918.53 4080.8 2854.82 2253.47 TRUE FALSE FALSE 2098.080345 2795.965829 2553.952547 2732.912289 3386.118917 2545.377178 3031.09868 4545.341777 2737.143111 2240.06626 0.936615306 1.24816211 1.140123662 1.220014041 1.511615517 1.136295485 1.353129027 2.029110414 1.221902745 1 11.12932569 -1 0.33949559 0.9734845 10.73546287 0.630036186 0.178857136 19.70135067 0.24869744 0.049938173 123.4983476 0.1 1 9.76197837 VEMYSGS(ph)DDDDDFNKLPK ddPTM_HeLa_CUDC101_4h_R1 1 VEMYSGSDDDDDFNKLPK 18 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 0 VEMY(0.005)S(0.378)GS(0.617)DDDDDFNKLPK 77.08 0.0069018 36754000 1501.4 1437.6 1440.1 1266.8 1667.1 1422 1585.9 1564.5 1604.1 1301.2 TRUE FALSE FALSE 1325.408168 1481.890752 1517.956162 1318.46558 1544.121354 1394.877719 1647.068694 1742.596356 1537.978319 1293.460405 1.024699452 1.145679255 1.173562141 1.019331999 1.193790973 1.078407746 1.273381611 1.347235949 1.18904167 1 10.33702018 -1 0.250059099 0.996161195 3.143211725 0.368095188 0.086438491 18.00511165 0.224681693 0.034359535 16.45566561 0.1 1 2.14705053 CPSQSSS(ph)RPAAMISQPPTPPTGQPVREDAK ddPTM_HeLa_CUDC101_4h_R1 1 CPSQSSSRPAAMISQPPTPPTGQPVREDAK 30 2 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 0 CPS(0.119)QS(0.119)S(0.119)S(0.389)RPAAMIS(0.254)QPPT(0.001)PPTGQPVREDAK 43.206 0.031558 8492400 743.29 576.12 521.11 563.51 976.22 868.77 797.86 970.46 554.97 387.02 TRUE FALSE FALSE 656.162673 593.8695743 549.2827829 586.4923735 904.2061955 852.1996597 828.6337275 1080.933244 532.0939017 384.7179878 1.705567958 1.543649097 1.427754356 1.52447349 2.35030912 2.215128189 2.153873106 2.809676901 1.383075184 1 8.587657475 -1 0.149665586 0.904934635 7.308129025 0.798729971 0.23404187 22.34075625 0.216374977 0.553650508 31.17609142 0.1 1 6.40319439 up VLSEDEEDVDFDIIHNANDTFTVK ddPTM_HeLa_CUDC101_4h_R1 2 VLSEDEEDVDFDIIHNANDTFTVK 24 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 0 ; ; 216.75 1.50E-28 34126000 4209.9 3553 2994.6 3146.2 3511.7 3616.8 2961.1 3532.4 3717 3623.3 FALSE FALSE TRUE 3716.421904 3662.463719 3156.497134 3274.515635 3252.648887 3547.815566 3075.310619 3934.514138 3563.783687 3601.74845 1.031838274 1.016857165 0.876379119 0.909146122 0.903074974 0.985025916 0.853838257 1.092390041 0.989459352 1 11.81448171 -6.789286518 24.52114258 1.015591538 0.932302212 0.236768687 0.063461699 150.1424224 132209.2221 0.009221134 0.012120608 1.62E-07 6.789286518 -0.083289326 DSAPSTPTSPT(ph)EFLTPGLR ddPTM_HeLa_CUDC101_4h_R1 1 DSAPSTPTSPTEFLTPGLR 19 0 Q9NZJ4-2;Q9NZJ4 Q9NZJ4-2 SACS Sacsin 1 0 DSAPST(0.025)PT(0.041)S(0.291)PT(0.641)EFLT(0.001)PGLR 132.79 0.00020395 21038000 1584.1 1238.2 1329.3 1433.1 1873.5 1669.1 1984.4 1954.4 985.65 1044.6 TRUE FALSE FALSE 1398.414199 1276.347474 1401.165979 1491.548012 1735.295638 1637.264698 2060.938973 2176.880996 945.0210898 1038.386673 1.34671817 1.22916396 1.349368223 1.436409048 1.671145907 1.576738937 1.984750986 2.09640691 0.910085919 1 10.02012806 -1 0.203767839 1.016284897 6.460467172 0.927543415 0.098222439 9.337942146 0.108069453 0.087905115 16.45607607 0.1 1 5.444182275 up VLTLS(ph)DDLER ddPTM_HeLa_CUDC101_4h_R1 2 VLTLSDDLER 10 0 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 1 0 VLT(0.011)LS(0.989)DDLER;VLT(0.033)LS(0.967)DDLER ; 117.25 0.0056549 14593500 3511 2917.1 2852.1 3244.8 3422.5 3024.5 2476.9 2442.8 3307.5 3505.1 TRUE FALSE FALSE 3099.445902 3006.972393 3006.293153 3377.136969 3170.028994 2966.812702 2572.434863 2720.878478 3171.16345 3484.251509 0.889558602 0.863018179 0.862823233 0.969257518 0.909816351 0.851492119 0.738303436 0.780907598 0.910141946 1 11.76663305 -1 0.107565088 1.050974756 0.233542357 0.504112422 0.052455633 57.39937043 0.43453164 0.347045078 6.983041939 0.1 1 -0.817432399 VMIYQDEVKLPAKLS(ph)ISK ddPTM_HeLa_CUDC101_4h_R1 1 VMIYQDEVKLPAKLSISK 18 2 Q6NZI2 Q6NZI2 PTRF Polymerase I and transcript release factor 1 0 VMIY(0.001)QDEVKLPAKLS(0.86)IS(0.139)K 69.98 0.015913 18547000 969.21 1267.8 885.68 1082.7 1129.2 1169.7 1202.5 1713.2 1343 759.44 TRUE FALSE FALSE 855.600673 1306.859415 933.5625398 1126.857186 1045.901166 1147.389921 1248.880828 1908.223763 1287.640972 754.9228171 1.133361787 1.731116593 1.236633095 1.492678669 1.385441189 1.519877126 1.654315911 2.527707098 1.705659098 1 9.560185341 -1 0.305075452 1.053254154 11.99848285 0.460098928 0.29648182 17.6136243 0.225280024 0.079762407 107.2937793 0.1 1 10.94522869 FLESYAT(ph)DNEK ddPTM_HeLa_CUDC101_4h_R1 1 FLESYATDNEK 11 0 Q9BZI7-2;Q9BZI7;A0A087WYC8 Q9BZI7-2 UPF3B Regulator of nonsense transcripts 3B 1 0 FLESYAT(1)DNEK 143.31 0.0059629 10968000 1664.1 1377.4 1578.3 1536.2 1522.7 2138.9 2081.6 3348.4 940.95 1046.8 TRUE FALSE FALSE 1469.036721 1419.836061 1663.627672 1598.852876 1410.373455 2098.104046 2161.888009 3729.568321 902.1636427 1040.573587 1.411756688 1.364474439 1.598760235 1.536511109 1.355380794 2.016295697 2.077592624 3.584146636 0.866986875 1 10.02316328 -1 0.534318346 1.221660756 92.23807377 0.908179146 0.221108843 22.12420467 0.1934862 0.040883833 2307.624209 0.1 1 91.01641301 up GFQFVSS(ph)SLPDICYR ddPTM_HeLa_CUDC101_4h_R1 1 GFQFVSSSLPDICYR 15 0 P62633-2;P62633;P62633-8;P62633-5;P62633-4;P62633-6 P62633-2 CNBP Cellular nucleic acid-binding protein 1 0 GFQFVS(0.058)S(0.471)S(0.471)LPDICYR 97.836 0.0067778 19548000 910.33 822.39 770.26 729.16 959.5 1022.9 1014.4 1183.2 931.64 653.38 TRUE FALSE FALSE 803.6224974 847.7268611 811.9025855 758.8982965 888.7195966 1003.389887 1053.525748 1317.890705 893.2374049 649.4936667 1.237306133 1.305211897 1.250054661 1.16844603 1.368326809 1.544880171 1.622072395 2.029104783 1.375282702 1 9.343171648 -1 0.313261239 1.081044176 9.554554456 0.80990667 0.118464626 10.51519491 0.134315002 0.032972235 51.38332323 0.1 1 8.473510279 up GVS(ph)IGTTCLLS(ph)VFQVIT(ph)VSS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 GVSIGTTCLLSVFQVITVSSR 21 0 Q7Z5H5 Q7Z5H5 VN1R4 Vomeronasal type-1 receptor 4 4 0 GVS(0.469)IGT(0.308)T(0.308)CLLS(0.928)VFQVIT(0.934)VS(0.335)S(0.719)R 40.837 0.0033335 0 924.05 882.24 887.45 715.64 1039.9 1129.1 1263.8 1321.4 750.16 371.54 TRUE FALSE FALSE 815.7342598 909.4207687 935.4282314 744.8268925 963.1886488 1107.564299 1312.545189 1471.822835 719.2380873 369.3300636 2.208686322 2.462352401 2.532770342 2.016697166 2.607934592 2.998846853 3.553854178 3.985115158 1.947412784 1 8.528766893 -1 0.097343702 2.37E-11 10.84416486 0.782810252 0.374082943 30.58809853 0.213270413 2.877780095 44.48667129 0.1 1 10.84416486 up IEEAMDGSET(ph)PQLFTVLPEKR ddPTM_HeLa_CUDC101_4h_R1 3 IEEAMDGSETPQLFTVLPEKR 21 1 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 0 IEEAMDGS(0.046)ET(0.954)PQLFTVLPEKR;IEEAMDGS(0.01)ET(0.99)PQLFTVLPEKR;IEEAMDGS(0.007)ET(0.993)PQLFTVLPEKR ;; 165 1.01E-06 250417000 11363.4 9160.9 10110.7 9068.8 12426.7 13144.1 12249.8 16500.1 8325.6 8282.6 TRUE FALSE FALSE 10031.39948 9443.136471 10657.31503 9438.664863 11510.0071 12893.39819 12722.27889 18378.40469 7982.415244 8233.334727 1.218388394 1.146939458 1.294410513 1.146396348 1.397976334 1.565999515 1.545215798 2.232194524 0.969523955 1 13.00726116 -1 0.403266734 1.090941855 18.79009415 0.9115311 0.104555284 12.62303951 0.148339072 0.024925814 179.9051691 0.1 1 17.6991523 up KPRPS(ph)EGDEDCLPASK ddPTM_HeLa_CUDC101_4h_R1 1 KPRPSEGDEDCLPASK 16 2 Q5VU10;P78346;P78346-2 Q5VU10 RPP30 Ribonuclease P protein subunit p30 1 0 KPRPS(1)EGDEDCLPASK 69.331 0.027958 59196000 3334.8 2680.3 3512.9 3210.1 3694.6 3634.5 4557 5089.6 2764.5 1758.4 TRUE FALSE FALSE 2943.899799 2762.876866 3702.818 3341.021753 3422.056719 3565.177968 4732.765016 5668.979491 2650.54614 1747.940959 1.68421009 1.580646562 2.118388485 1.911404236 1.957764478 2.039644389 2.707622928 3.243232824 1.516381962 1 10.77144074 -1 0.166976007 0.926468495 9.327370645 0.84133184 0.238176115 14.58505134 0.151538254 0.365224844 30.62198335 0.1 1 8.40090215 up FAQK(ac)IGGSER ddPTM_HeLa_CUDC101_4h_R1 2 FAQKIGGSER 10 1 E9PP21;P21291;E9PND2;E9PS42 E9PP21 CSRP1 Cysteine and glycine-rich protein 1 0 1 ; FAQK(1)IGGSER;FAQK(1)IGGSER 140.17 0.00085018 42603000 3259.5 3578.9 3468.2 3836.8 4175.2 4244.1 4718.5 6217 1937.05 2102.73 FALSE TRUE FALSE 2877.426351 3689.161667 3655.701383 3993.281288 3867.203814 4163.150864 4900.494126 6924.71815 1857.203979 2090.222868 1.376612224 1.764960915 1.748952917 1.910457181 1.850139462 1.991725823 2.344484026 3.312908999 0.888519596 1 11.02944106 -1 0.213116885 0.981071123 11.42403669 0.900749091 0.206277472 10.49806753 0.123952116 0.165440116 37.66418526 0.1 1 10.44296557 KTS(ph)DANETEDHLESLICK ddPTM_HeLa_CUDC101_4h_R1 1 KTSDANETEDHLESLICK 18 1 F2Z2T1;Q09161 F2Z2T1 NCBP1 Nuclear cap-binding protein subunit 1 1 0 KT(0.344)S(0.453)DANET(0.203)EDHLESLICK 66.644 0.036763 61364000 7463.5 5848.4 6127.4 7339 10178 10410 12776 13948 6634.1 3634.8 TRUE FALSE FALSE 6588.639844 6028.582272 6458.665778 7638.316142 9427.189217 10211.44659 13268.7746 15535.78394 6360.63959 3613.180048 1.823501668 1.668497609 1.78752946 2.114014813 2.60911139 2.826165997 3.67232588 4.299753606 1.76039929 1 11.81905343 -1 0.250741072 1.131087583 22.07510507 0.945163352 0.223722387 6.06938805 0.07579158 0.111898838 54.30955947 0.1 1 20.94401749 up VSVT(ph)PPEESQNSDTPPRPDRLPLDEK ddPTM_HeLa_CUDC101_4h_R1 1 VSVTPPEESQNSDTPPRPDRLPLDEK 26 2 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 0 VS(0.076)VT(0.848)PPEES(0.026)QNS(0.029)DT(0.022)PPRPDRLPLDEK 57.629 0.0050078 26549000 2319.8 2217.5 2132 2451.4 2494.2 2412.3 2307.8 2563.6 2751.9 2084.5 TRUE FALSE FALSE 2047.876561 2285.818547 2247.262369 2551.378688 2310.207835 2366.289397 2396.812619 2855.429862 2638.465517 2072.101301 0.988309094 1.103140346 1.084533062 1.231300172 1.114910663 1.14197573 1.156706295 1.378035842 1.27332844 1 11.01687882 -1 0.213473859 0.967354639 2.746442861 0.08560594 0.109115783 18.71723917 0.221154385 0.049991445 11.46573728 0.1 1 1.779088222 LAS(ph)VSADAEVAR ddPTM_HeLa_CUDC101_4h_R1 1 LASVSADAEVAR 12 0 A0A669KB77;P11137-3;P11137 A0A669KB77 MAP2 Microtubule-associated protein 2 1 0 LAS(0.947)VS(0.053)ADAEVAR 129.76 0.0017148 9131200 807.65 819.79 1083.7 837.59 1643.7 1691.2 1812.1 2523.5 848.05 705.55 TRUE FALSE FALSE 712.9784913 845.0467582 1142.2881 871.7505406 1522.447526 1658.943178 1881.993304 2810.76504 813.0930201 701.3533572 1.016575288 1.204880178 1.628691284 1.242954827 2.170728221 2.365345743 2.683373915 4.007630406 1.159320066 1 9.453997679 -1 0.348575348 0.94787821 36.61159585 0.951625107 0.202133219 6.450876937 0.080891677 0.052898556 153.0055984 0.1 1 35.66371764 up LDLDLTADS(ph)QPPVFK ddPTM_HeLa_CUDC101_4h_R1 2 LDLDLTADSQPPVFK 15 0 Q13263-2;Q13263;M0R0K9 Q13263-2 TRIM28 Transcription intermediary factor 1-beta 1 0 LDLDLTADS(1)QPPVFK;LDLDLT(0.001)ADS(0.999)QPPVFK ; 160.03 5.50E-08 10512000 2108.3 2191.64 2348.9 2558.5 3776.8 4282.8 5416.4 8909.3 2094.96 1942.52 TRUE FALSE FALSE 1861.16827 2259.161831 2475.888639 2662.846689 3498.192988 4201.112726 5625.312362 9923.498699 2008.604862 1930.965805 0.963853563 1.169964701 1.282202219 1.379023224 1.811628658 2.175653611 2.913211797 5.139137459 1.04020737 1 10.9151069 -1 0.522361168 0.989220635 154.8656346 0.991396279 0.114404574 5.980582846 0.054095804 0.021820852 1026.089278 0.1 1 153.876414 up LS(ph)SSSATLLNS(ph)PDR ddPTM_HeLa_CUDC101_4h_R1 1 LSSSSATLLNSPDR 14 0 Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7;A0A087WZ40 Q14244-5 MAP7 Ensconsin 2 0 LS(0.505)S(0.16)S(0.329)S(0.002)AT(0.004)LLNS(1)PDR 132.5 0.0072899 10836000 2843.3 1932.9 2089.6 2375.7 3370.2 3008.4 3420.8 4833.7 2209.9 2267.9 TRUE FALSE FALSE 2510.012684 1992.450358 2202.570097 2472.591315 3121.58706 2951.019782 3552.741402 5383.94887 2118.806987 2254.41043 1.113378758 0.883801073 0.977004927 1.096779576 1.384657833 1.308998461 1.5759071 2.388184866 0.939849709 1 11.13853448 -1 0.621102249 1.035920717 99.63090279 0.943131216 0.102012287 27.82959683 0.184613349 0.018000669 3755.761042 0.1 1 98.59498208 up QGSPDQVS(ph)PVSEMTSTSLYQDKQEGK ddPTM_HeLa_CUDC101_4h_R1 4 QGSPDQVSPVSEMTSTSLYQDKQEGK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QGS(0.03)PDQVS(0.656)PVS(0.225)EMT(0.078)S(0.008)T(0.003)SLYQDKQEGK;QGSPDQVS(0.653)PVS(0.346)EMT(0.001)STSLYQDKQEGK;QGS(0.035)PDQVS(0.962)PVS(0.002)EMTSTSLYQDKQEGK;QGS(0.001)PDQVS(0.962)PVS(0.036)EMT(0.001)STSLYQDKQEGK ;;; 137.9 3.55E-11 102064000 4333.55 4584.7 4670.78 4609.98 5923.5 5868.57 5712.76 8502.69 5214.71 3946.41 TRUE FALSE FALSE 3825.577838 4725.949173 4923.296495 4797.99491 5486.535206 5756.636805 5933.103067 9470.601861 4999.757447 3922.936578 0.975182179 1.204696808 1.255002827 1.223062065 1.398578615 1.467430505 1.512413711 2.414161349 1.274493571 1 11.9377183 -1 0.407600372 0.997719321 22.99232653 0.849199076 0.149638192 12.57323413 0.146748326 0.029151176 225.787334 0.1 1 21.99460721 up QGSPDQVSPVS(ph)EMTSTSLYQDKQEGK ddPTM_HeLa_CUDC101_4h_R1 1 QGSPDQVSPVSEMTSTSLYQDKQEGK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 QGSPDQVS(0.091)PVS(0.904)EMT(0.004)STSLYQDKQEGK 113.89 4.06E-08 21980000 951.77 858.6 643.49 644.14 879.56 1084.8 921.75 1445.6 650.74 481.63 TRUE FALSE FALSE 840.2049634 885.0524483 678.2790159 670.4108134 814.6766111 1064.109247 957.3022063 1610.161261 623.9162218 478.7652433 1.754941435 1.848614662 1.416725682 1.400291318 1.701620204 2.222611733 1.999523189 3.363154037 1.303177769 1 8.903174611 -1 0.429072552 1.353733049 37.18249842 0.80785247 0.272671877 26.73047692 0.300610873 0.076263248 835.31521 0.1 1 35.82876537 up RDS(ph)FDNCSLGESSK ddPTM_HeLa_CUDC101_4h_R1 4 RDSFDNCSLGESSK 14 1 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 0 RDS(0.999)FDNCSLGESSK;RDS(1)FDNCSLGESSK;RDS(1)FDNCSLGESSK;RDS(0.996)FDNCS(0.004)LGESSK ;;; 247.5 1.40E-55 99825600 17942.9 13740.5 13099.7 14624.8 18034.6 18702.7 16069.3 25507.5 15297.8 10143.6 TRUE FALSE FALSE 15839.66046 14163.82852 13807.90941 15221.26256 16704.22349 18345.97716 16689.09828 28411.1707 14667.21821 10083.26542 1.570885999 1.40468667 1.369388669 1.509556868 1.656628364 1.819448006 1.655128333 2.817655742 1.454609951 1 13.2996753 -1 0.351229622 1.236810202 16.60983815 0.769263394 0.215458902 20.59505689 0.257692279 0.070263276 212.6931829 0.1 1 15.37302795 up VLTANSNPSSPSAAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 VLTANSNPSSPSAAKR 16 1 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 0 1 ; VLTANSNPSSPSAAK(1)R;VLTANSNPSSPSAAK(1)R 384.88 5.93E-277 27698000 275.9 410.84 412.76 782.94 1106.19 1245.75 1513.7 1775.88 0 127.129 FALSE TRUE FALSE 243.5594202 423.4974934 435.0750541 814.8716774 1024.588568 1221.989394 1572.083916 1978.039001 0 126.3728311 1.927308411 3.351175169 3.442789486 6.448155593 8.107664907 9.669716063 12.44004667 15.65240712 0 1 6.981542521 -4.591841645 0.405173994 0.976680099 23.62468181 0.987854756 0.543794031 0.235694024 0.031515802 0.121189397 2.459111496 2.56E-05 4.591841645 22.64800171 RGS(ph)SPGSLEIPKDLPDILNK ddPTM_HeLa_CUDC101_4h_R1 1 RGSSPGSLEIPKDLPDILNK 20 2 A0A1B0GUI1;Q6GYQ0-3;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 0 RGS(0.446)S(0.446)PGS(0.108)LEIPKDLPDILNK 67.645 0.0044986 8864100 1608.4 1428.4 1286.4 1503.5 2116.9 1589.2 1586.2 2243 1503.4 1255.6 TRUE FALSE FALSE 1419.86579 1472.407311 1355.946675 1564.819229 1960.740504 1558.888658 1647.380265 2498.334053 1441.429216 1248.131635 1.137592983 1.17968912 1.086381145 1.253729322 1.570940475 1.248977763 1.319877022 2.001659106 1.154869546 1 10.28555438 -1 0.32611065 1.046475102 8.856742951 0.700331288 0.151725837 19.58329943 0.24905271 0.047554675 93.08382845 0.1 1 7.810267849 up VLTLSDDLER ddPTM_HeLa_CUDC101_4h_R1 2 VLTLSDDLER 10 0 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 0 0 ; ; 160.82 0.00033151 25945000 3888 3468.3 2932.6 3498.4 3545.8 3641.3 3571.2 3279.1 3640.4 3247.6 FALSE FALSE TRUE 3432.254534 3575.154212 3091.145227 3641.079873 3284.233398 3571.848269 3708.94238 3652.379489 3490.341171 3228.283131 1.063182625 1.10744754 0.957519865 1.127868816 1.017331276 1.106423484 1.148890054 1.13136901 1.081175668 1 11.6565514 -1 0.167826126 1.001790423 1.568941074 0.244964726 0.052420843 43.18958787 0.450127661 0.072089228 6.16142092 0.1 1 0.567150651 RIS(ph)SSSVQPCSEEVSTPQDSLAQCK ddPTM_HeLa_CUDC101_4h_R1 1 RISSSSVQPCSEEVSTPQDSLAQCK 25 1 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 0 RIS(0.385)S(0.186)S(0.186)S(0.186)VQPCS(0.056)EEVSTPQDSLAQCK 73.13 0.0002168 39123000 2017.9 1345.1 1271.7 1461.8 2030.2 2512.7 2209.4 2866.4 1509.1 982.36 TRUE FALSE FALSE 1781.364821 1386.540937 1340.451949 1521.418522 1880.436191 2464.774434 2294.617298 3192.69939 1446.894259 976.516879 1.824202796 1.41988425 1.372686922 1.558005351 1.925656618 2.524046933 2.349797886 3.269476911 1.48168894 1 9.931501171 -1 0.290732937 1.258489328 16.90553954 0.863253123 0.236106398 15.48780582 0.197968716 0.122073612 126.4092796 0.1 1 15.64705022 up RKTS(ph)DANETEDHLESLICK ddPTM_HeLa_CUDC101_4h_R1 1 RKTSDANETEDHLESLICK 19 2 F2Z2T1;Q09161 F2Z2T1 NCBP1 Nuclear cap-binding protein subunit 1 1 0 RKT(0.146)S(0.527)DANET(0.327)EDHLESLICK 64.275 0.0099106 38614000 2328.9 1828.1 1784.1 2833.7 4321.4 3694.8 4610.4 6277.2 2434.6 1101.1 TRUE FALSE FALSE 2055.909872 1884.421594 1880.553843 2949.270534 4002.618931 3624.327846 4788.224672 6991.771075 2334.244758 1094.550608 1.878314129 1.72163953 1.718105886 2.694503582 3.656860543 3.311247391 4.374603272 6.387800639 2.132605601 1 10.09612295 -1 0.292894164 1.170077198 42.82118448 0.914721111 0.444320382 7.20290447 0.092100108 0.146691549 158.0607097 0.1 1 41.65110728 up S(ph)PGSNSKVPEIEVTVEGPNNNNPQTSAVR ddPTM_HeLa_CUDC101_4h_R1 2 SPGSNSKVPEIEVTVEGPNNNNPQTSAVR 29 1 P78347-2;P78347-4;P78347-3;P78347;A0A494C1K3 P78347-2 GTF2I General transcription factor II-I 1 0 S(0.591)PGS(0.174)NS(0.174)KVPEIEVT(0.062)VEGPNNNNPQTSAVR;S(0.36)PGS(0.313)NS(0.313)KVPEIEVT(0.013)VEGPNNNNPQTSAVR ; 69.052 4.57E-05 49485000 1296.77 1459.7 1450.64 1370.79 1978.98 1498.65 1835.85 2450.69 1390.54 957.67 TRUE FALSE FALSE 1144.764586 1504.671627 1529.065986 1426.696741 1832.994588 1470.065748 1906.659349 2729.666644 1333.221353 951.9737362 1.202516984 1.580581028 1.606206062 1.498672376 1.925467603 1.544229312 2.002848689 2.867376 1.400481234 1 9.894777962 -1 0.237426948 0.991111627 10.47801447 0.758957338 0.240849546 13.00305927 0.159853354 0.131200543 48.97149903 0.1 1 9.486902847 up VLVVSAK ddPTM_HeLa_CUDC101_4h_R1 1 VLVVSAK 7 0 H3BV85;H3BTW0;A0A0B4J295;A0A087WZT3;H3BVE0;Q9H3K6-2;Q9H3K6 H3BV85 BOLA2B;BOLA2 BolA-like protein 2 0 0 119.57 0.028554 874850 2362.3 2198 1651 2126 2649.6 2019.5 1976.8 1758.8 1916.2 1167.2 FALSE FALSE TRUE 2085.394775 2265.717775 1740.258054 2212.707469 2454.144287 1980.981402 2053.045838 1959.014683 1837.213425 1160.257442 1.797355224 1.952771593 1.499889585 1.907083194 2.1151722 1.707363667 1.769474397 1.688431042 1.583453256 1 10.18022924 -9.130987402 0.647622374 0.924762098 1.820807002 0.324131772 0.237876233 0.3268254 0.219561571 0.164370036 0.035711763 7.40E-10 9.130987402 0.896044904 WDET(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 1 WDETPGR 7 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 WDET(1)PGR 138.08 0.0035148 17665000 9713.2 7118.5 7128.9 7390.4 9068.2 9171.3 9161.4 8520.6 6369.7 6774.5 TRUE FALSE FALSE 8574.63342 7337.812547 7514.309898 7691.812456 8399.256952 8996.372733 9514.758267 9490.550663 6107.13827 6734.204973 1.273295579 1.089633086 1.115842171 1.142200525 1.24725294 1.335922023 1.412900009 1.409305286 0.906883336 1 12.71729192 -1 0.133246307 0.991555164 2.423447934 0.710587033 0.087292479 43.54383246 0.38875454 0.310031108 11.81142588 0.1 1 1.43189277 VLYVGGLAEEVDDK ddPTM_HeLa_CUDC101_4h_R1 1 VLYVGGLAEEVDDK 14 0 E9PK21;E9PEQ6;Q9UNP9-2;Q9UNP9;Q9UNP9-3 E9PK21 PPIE Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase E 0 0 178.81 5.17E-07 7197800 1472.6 1067.6 1185.5 1288.4 1239.8 1258.8 1240.7 1100.5 1186.5 1527.7 FALSE FALSE TRUE 1299.98406 1100.491491 1249.591716 1340.946521 1148.342424 1234.790487 1288.554215 1225.776472 1137.591968 1518.613172 0.856033705 0.724668738 0.822850571 0.883007302 0.756178364 0.813104028 0.848507202 0.807168339 0.749099236 1 10.56853871 -8.586014551 0.716798195 0.995184368 0.810630359 0 0.087559381 0.259770678 0.270548997 0.024111793 0.010371332 2.59E-09 8.586014551 -0.184554009 WRS(ph)LQQLAEER ddPTM_HeLa_CUDC101_4h_R1 2 WRSLQQLAEER 11 1 A0A0D9SF54;A0A0D9SGF6;Q13813-3;Q13813;Q13813-2 A0A0D9SF54 SPTAN1 "Spectrin alpha chain, non-erythrocytic 1" 1 0 WRS(1)LQQLAEER;WRS(1)LQQLAEER ; 126.1 0.014612 18053400 1837.84 1442.67 1420.79 1610.54 1857.75 1680.89 1682.09 1845.66 1567.91 1504.98 TRUE FALSE FALSE 1622.411181 1487.116953 1497.602205 1676.224783 1720.707484 1648.829824 1746.968775 2055.762474 1503.280086 1496.028312 1.084478929 0.994043322 1.001052048 1.120449907 1.15018377 1.102138115 1.167737777 1.374146771 1.004847351 1 10.54692176 -1 0.492411013 1.034819663 10.74127425 0.842855135 0.043964266 28.69380615 0.280873133 0.009739122 288.8605427 0.1 1 9.706454585 VMEIVDADEK ddPTM_HeLa_CUDC101_4h_R1 1 VMEIVDADEK 10 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 0 127.76 0.016257 6130500 2348.7 1737.5 1755.4 1778 1696.1 1804.6 1480.1 1470.1 1931.2 1952.7 FALSE FALSE TRUE 2073.388946 1791.030316 1850.302234 1850.514525 1570.982082 1770.180262 1537.187953 1637.450242 1851.595119 1941.085254 1.068159651 0.922695339 0.953230792 0.953340159 0.809331831 0.911953897 0.791921916 0.843574613 0.953896855 1 10.92264777 -6.258196262 0.855181036 1.030362128 0.830702825 0.596165443 0.051733615 0.216745185 0.312723373 0.009175484 0.021004162 5.52E-07 6.258196262 -0.199659303 VMEK(ac)PSPLLVGR ddPTM_HeLa_CUDC101_4h_R1 2 VMEKPSPLLVGR 12 1 Q9UN86-2;Q9UN86;D6R9X5;D6RB17;E5RJU8;E5RIZ6;D6RAC7;D6RGJ4;E5RH42;D6RBW8;E5RH00;E5RIF8;E5RI46;D6RBR0;D6REX8;D6RBM9;D6R9A4;Q13283-2;D6RE13;Q13283 Q9UN86-2;Q13283 G3BP2;G3BP1 Ras GTPase-activating protein-binding protein 2;Ras GTPase-activating protein-binding protein 1 0 1 ; VMEK(1)PSPLLVGR;VMEK(1)PSPLLVGR 149.96 0.00013066 2201700 969.78 143.05 175.741 71.605 707.41 480.82 522.27 669.04 525.94 265.54 FALSE TRUE FALSE 856.1038585 147.4572009 185.24209 74.5253614 655.2257737 471.6491596 542.4141288 745.2008092 504.2605306 263.9605563 3.243302221 0.558633468 0.701779435 0.282335219 2.482286683 1.786816812 2.054905992 2.82315214 1.910363191 1 8.044178553 -9.875802913 2.013982512 0.993434675 1.986305396 0 0.996041199 0.67323909 4.950482395 0.850788011 0.168594865 1.33E-10 9.875802913 0.992870722 SITST(ph)PLSGK ddPTM_HeLa_CUDC101_4h_R1 2 SITSTPLSGK 10 0 Q9P0K7-3;Q9P0K7;Q9P0K7-2;Q9P0K7-4 Q9P0K7-3 RAI14 Ankycorbin 1 0 SIT(0.004)S(0.191)T(0.797)PLS(0.008)GK;S(0.003)IT(0.022)S(0.075)T(0.899)PLSGK ; 166.11 8.61E-05 129199000 7567.4 7899.3 8278.3 8840.1 12432.8 11627 13087.5 16770 7902.1 7417.7 TRUE FALSE FALSE 6680.360843 8142.66807 8725.849938 9200.637488 11515.65711 11405.23435 13592.28926 18679.02901 7576.372093 7373.579191 0.90598618 1.104303332 1.183394077 1.247784455 1.561745906 1.546770442 1.843377403 2.53323773 1.027502641 1 12.84814937 -1 0.361567486 0.936113001 21.07437634 0.964027841 0.08953698 6.910884077 0.085655043 0.026913686 97.15238003 0.1 1 20.13826334 up YDLNELCTWFMQTTET(ph)QS(ph)LS(ph)LVRK ddPTM_HeLa_CUDC101_4h_R1 1 YDLNELCTWFMQTTETQSLSLVRK 24 1 A0A1B0GVP4;A8MVM7 A0A1B0GVP4 Putative uncharacterized protein ENSP00000382790 3 0 Y(0.008)DLNELCT(0.009)WFMQT(0.455)T(0.105)ET(0.513)QS(0.956)LS(0.953)LVRK 44.301 0.0028302 0 286.82 254.58 183.68 190.74 283.51 281.96 305.76 368.83 167.56 156.71 TRUE FALSE FALSE 253.1993944 262.423308 193.6102964 198.5192016 262.5960321 276.5820828 317.5532656 410.8161163 160.6531059 155.777882 1.625387322 1.684599282 1.242861271 1.274373481 1.685708066 1.775490072 2.038500342 2.637191565 1.031295996 1 7.283346597 -1 0.356981221 1.261168894 17.5058009 0.809146725 0.206347493 21.96309231 0.273416777 0.07333669 244.8923074 0.1 1 16.24463201 SS(ph)SVVSAEMSGCSSK ddPTM_HeLa_CUDC101_4h_R1 1 SSSVVSAEMSGCSSK 15 0 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 S(0.02)S(0.483)S(0.483)VVS(0.014)AEMSGCSSK 142.57 0.00038206 7895500 1663.7 1359.8 1555.8 1631.8 1758.3 2008.1 1830.7 2461.7 1634.8 1191.1 TRUE FALSE FALSE 1468.683608 1401.693826 1639.911254 1698.351857 1628.593712 1969.798838 1901.310712 2741.929977 1567.412852 1184.015284 1.240426224 1.183847747 1.385042301 1.434400282 1.37548369 1.663659975 1.605816021 2.315789343 1.323811333 1 10.20947199 -1 0.287834992 1.064126115 9.803117304 0.836912376 0.137699611 10.13390245 0.129456667 0.046429302 45.57555577 0.1 1 8.738991189 up SSS(ph)SGSDDYAYTQALLLHQR ddPTM_HeLa_CUDC101_4h_R1 1 SSSSGSDDYAYTQALLLHQR 20 0 F6SS63;Q8N5C8-2;Q8N5C8 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 0 S(0.09)S(0.09)S(0.655)S(0.129)GS(0.036)DDYAYTQALLLHQR 189.84 2.63E-12 18166000 562.12 458.48 698.5 725.83 790.87 867.71 847.51 1518.1 778.71 487.42 TRUE FALSE FALSE 496.2291457 472.6052254 736.2630228 755.4324847 732.5290957 851.1598775 880.1987446 1690.914368 746.6112442 484.5208042 1.024164786 0.975407498 1.519569473 1.559133227 1.51186304 1.756704501 1.81663767 3.489869482 1.540927114 1 8.920414803 -1 0.477646261 1.032483951 62.47116234 0.837406298 0.277626067 17.72692515 0.179877394 0.046124297 1087.69531 0.1 1 61.43867839 up SSS(ph)VVSAEMSGCSSK ddPTM_HeLa_CUDC101_4h_R1 1 SSSVVSAEMSGCSSK 15 0 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 0 S(0.002)S(0.053)S(0.824)VVS(0.12)AEMSGCSSK 130.47 0.00067102 6344000 3420.4 2701.6 2723 3169.9 3529.6 3702.6 3263.9 4702.6 3032.9 2461.8 TRUE FALSE FALSE 3019.465897 2784.833094 2870.213617 3299.182223 3269.22844 3631.979074 3389.789716 5237.924975 2907.882578 2447.157104 1.233866797 1.13798705 1.172876728 1.348169359 1.335929121 1.48416261 1.385194972 2.140412222 1.188269676 1 11.25689101 -1 0.407270213 1.102437164 16.45610805 0.844393923 0.117159529 17.78128235 0.20764182 0.028903074 222.6675855 0.1 1 15.35367089 up TLS(ph)SSSMDLSRR ddPTM_HeLa_CUDC101_4h_R1 2 TLSSSSMDLSRR 12 1 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 0 T(0.256)LS(0.679)S(0.046)S(0.011)S(0.008)MDLSRR;T(0.04)LS(0.95)S(0.009)S(0.001)SMDLSRR ; 111.72 0.0028376 24727000 1987.97 1897.73 1662.82 1512.63 2000.19 2049.98 2267.75 2654.9 1801.55 1448.03 TRUE FALSE FALSE 1754.94317 1956.196812 1752.717079 1574.32159 1852.639969 2010.880047 2355.217877 2957.123085 1727.289346 1439.417053 1.219204098 1.359020173 1.217657575 1.093721647 1.287076574 1.397010021 1.636230356 2.054389364 1.199992277 1 10.49126894 -1 0.463557857 1.110081718 24.84870238 0.888271506 0.096270891 19.84880748 0.208024741 0.023956782 453.2716187 0.1 1 23.73862066 up TTS(ph)FAESCKPVQQPSAFGSMK ddPTM_HeLa_CUDC101_4h_R1 1 TTSFAESCKPVQQPSAFGSMK 21 1 P49841;P49841-2;A0A3B3ITW1 P49841 GSK3B Glycogen synthase kinase-3 beta 1 0 T(0.234)T(0.053)S(0.71)FAES(0.002)CKPVQQPSAFGSMK 101.33 0.00010665 74991000 3027.7 2523 2659.1 2993.3 3802 4138.3 3839 4096.5 2386.7 1936 TRUE FALSE FALSE 2672.797596 2600.73064 2802.858989 3115.379712 3521.534035 4059.368822 3987.071516 4562.829001 2288.319216 1924.484586 1.388838142 1.351390735 1.456420597 1.618812504 1.82985827 2.109327792 2.071760691 2.370935592 1.189055622 1 10.9102564 -1 0.168885691 0.900988242 7.05957315 0.961833768 0.082202039 6.969408294 0.072912971 0.12432981 10.88330209 0.1 1 6.158584909 up VPAAFPTKVPVPGPGS(ph)GGNGPER ddPTM_HeLa_CUDC101_4h_R1 2 VPAAFPTKVPVPGPGSGGNGPER 23 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 0 VPAAFPTKVPVPGPGS(1)GGNGPER;VPAAFPTKVPVPGPGS(1)GGNGPER ; 87.439 0.0001812 46404000 1100.08 1438.53 1326.32 1233.02 1526.51 1308.87 1334.3 2176.26 1215.23 1082.16 TRUE FALSE FALSE 971.13029 1482.849404 1398.024871 1283.307885 1413.902399 1283.905485 1385.764398 2423.996642 1165.137705 1075.723264 0.902769627 1.378467356 1.299613867 1.192972141 1.314373729 1.193527674 1.288216444 2.253364524 1.0831203 1 10.07109127 -1 0.640427929 1.024483369 94.22878836 0.736144695 0.180307962 72.88691791 0.451555263 0.034593865 9631.642509 0.1 1 93.204305 up YTPTSPSYSPS(ph)SPEYTPTSPK ddPTM_HeLa_CUDC101_4h_R1 1 YTPTSPSYSPSSPEYTPTSPK 21 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 0 YTPTSPSYS(0.002)PS(0.933)S(0.065)PEYTPTSPK 124.66 4.53E-07 9290900 7319.6 6669.6 6032.9 6566.9 6932.1 6706.1 6665.6 6463.4 5499.7 6371.6 TRUE FALSE FALSE 6461.607584 6875.082471 6359.056823 6834.726567 6420.732794 6578.192316 6922.694425 7199.16733 5273.000038 6333.70144 1.020194533 1.085476247 1.004003249 1.079104633 1.013740994 1.038601579 1.092993487 1.136644567 0.832530565 1 12.62883315 -1 0.315284642 1.009111671 2.1235663 0.35039913 0.063377536 24.7502264 0.315984968 0.009930347 16.04476314 0.1 1 1.114454629 VMTSGTGAPAK(ac)IITAVPK ddPTM_HeLa_CUDC101_4h_R1 1 VMTSGTGAPAKIITAVPK 18 1 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 0 1 VMTSGTGAPAK(1)IITAVPK 85.42 0.0045228 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)AAAAAAAGDS(ph)DSWDADAFSVEDPVR ddPTM_HeLa_CUDC101_4h_R1 1 AAAAAAAGDSDSWDADAFSVEDPVR 25 0 O75822-2;O75822;O75822-3 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 0 AAAAAAAGDS(0.994)DS(0.006)WDADAFSVEDPVR 199.41 8.01E-93 0 0 0 113.99 106.95 159.42 51.376 0 226.35 0 0 TRUE FALSE FALSE 0 0 120.1526442 111.3118833 147.6599042 50.3960884 0 252.1167691 0 0 0 VMYEK(ac)EAK ddPTM_HeLa_CUDC101_4h_R1 1 VMYEKEAK 8 1 E5RJD8;E5RHG6;O75347;A0A494C144;E5RIX8;O75347-2 E5RJD8 TBCA Tubulin-specific chaperone A 0 1 VMYEK(1)EAK 88.948 0.031066 675120 429.73 446.27 298.36 400.17 379.14 283.2 296.84 588.5 514.06 372.47 FALSE TRUE FALSE 379.3577008 460.0190497 314.4902441 416.4906623 351.1715976 277.7984318 308.2892182 655.4924612 492.8702292 370.2545319 1.024586246 1.242440025 0.849389317 1.124876609 0.948459957 0.75029043 0.832641309 1.770383357 1.33116596 1 8.532373584 -4.254134422 24.95634437 0.993371694 1.770383732 0.630391535 0.173816748 324.355866 1108087.601 0.01856648 0.256463296 5.57E-05 4.254134422 0.777012038 (ac)AAAIT(ph)DMADLEELSRLSPLPPGS(ph)PGSAAR ddPTM_HeLa_CUDC101_4h_R1 2 AAAITDMADLEELSRLSPLPPGSPGSAAR 29 1 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 2 0 AAAIT(0.934)DMADLEELS(0.042)RLS(0.044)PLPPGS(0.811)PGS(0.17)AAR;AAAIT(0.852)DMADLEELS(0.2)RLS(0.131)PLPPGS(0.655)PGS(0.162)AAR ; 46.714 4.80E-07 54965000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 VNASASSLK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VNASASSLKK 10 1 Q16658 Q16658 FSCN1 Fascin 0 1 ; VNASASSLK(1)K;VNASASSLK(1)K 121.36 0.002884 3602600 3773.1 1839.42 1756.21 1900.93 2642.5 2525.1 2539.1 2110.65 2227.3 1190.04 FALSE TRUE FALSE 3330.822938 1896.09035 1851.156025 1978.458142 2447.56804 2476.937925 2637.033938 2350.917864 2135.489751 1182.961589 2.815664488 1.602833403 1.564848801 1.672461862 2.069017339 2.09384476 2.229179681 1.987315468 1.805206332 1 10.20818751 -9.623923681 1.448973887 1.001953035 2.100281585 0.125275682 0.427511447 0.293288388 1.109127759 0.308329995 0.071039869 2.38E-10 9.623923681 1.09832855 (ac)AALGHLAGEAAAAPGPGT(ph)PCASR ddPTM_HeLa_CUDC101_4h_R1 4 AALGHLAGEAAAAPGPGTPCASR 23 0 A0A3B3IRR6;A0A3B3IT54;A0A3B3ITA3;Q9H7E9;Q9H7E9-2 A0A3B3IRR6 C8orf33 UPF0488 protein C8orf33 1 0 AALGHLAGEAAAAPGPGT(0.961)PCAS(0.039)R;AALGHLAGEAAAAPGPGT(0.996)PCAS(0.004)R;AALGHLAGEAAAAPGPGT(0.996)PCAS(0.004)R;AALGHLAGEAAAAPGPGT(0.998)PCAS(0.002)R ;;; 138.04 4.68E-46 107797000 114.5 127.41 241.642 204.355 48.548 57.866 74.204 0 59.568 0 TRUE FALSE FALSE 101.0784836 131.3353511 254.7058974 212.6894802 44.96671076 56.76230246 77.06607314 0 57.11258183 0 0 (ac)ACRPRS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 ACRPRSPPR 9 2 F8W8D3;Q14493;E7EUV9;Q14493-2 F8W8D3 SLBP Histone RNA hairpin-binding protein 1 0 ACRPRS(1)PPR 69.825 0.0050916 4236400 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 VNEASGDGDGEDAVVILEK ddPTM_HeLa_CUDC101_4h_R1 2 VNEASGDGDGEDAVVILEK 19 0 Q96C86 Q96C86 DCPS m7GpppX diphosphatase 0 0 ; ; 230.29 1.09E-33 32053000 3987.7 4066.3 3602.9 3337.7 3797.1 3929.9 3359.2 3437.8 3879.4 3663.2 FALSE FALSE TRUE 3520.267851 4191.577883 3797.683672 3473.825833 3516.995498 3854.943705 3488.765469 3829.145256 3719.48949 3641.411123 0.966731778 1.151086142 1.042915382 0.953977926 0.965833129 1.058640064 0.958080632 1.051555325 1.021441788 1 11.83028192 (ac)ADEAALALQPGGSPS(ph)AAGADREAASSPAGEPLR ddPTM_HeLa_CUDC101_4h_R1 1 ADEAALALQPGGSPSAAGADREAASSPAGEPLR 33 1 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 0 ADEAALALQPGGS(0.248)PS(0.661)AAGADREAAS(0.063)S(0.029)PAGEPLR 49.152 6.88E-07 14477000 0 0 0 0 0 134.15 0 70.776 0 0 TRUE FALSE FALSE 0 0 0 0 0 131.5913123 0 78.83285375 0 0 0 (ac)ADGDSGS(ph)ERGGGGGPCGFQPASR ddPTM_HeLa_CUDC101_4h_R1 1 ADGDSGSERGGGGGPCGFQPASR 23 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 0 ADGDS(0.24)GS(0.76)ERGGGGGPCGFQPASR 72.662 4.65E-05 34463000 0 53.048 137.2 127.15 0 0 0 0 128.69 0 TRUE FALSE FALSE 0 54.682346 144.617447 132.3357266 0 0 0 0 123.3853437 0 0 (ac)ADHNPDSDST(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 ADHNPDSDSTPR 12 0 Q96BT3;H3BMP6;H3BQS6;H3BN05;H3BTS2;H3BQJ0;I3L4F8;H3BUW2;H3BTR4;Q96BT3-3;Q96BT3-2;H3BQ71 Q96BT3 CENPT Centromere protein T 1 0 ADHNPDS(0.001)DS(0.04)T(0.96)PR;ADHNPDSDS(0.233)T(0.767)PR ; 113.52 3.07E-23 7226700 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)AEEES(ph)DQEAER ddPTM_HeLa_CUDC101_4h_R1 1 AEEESDQEAER 11 0 A0A1B0GWA0 A0A1B0GWA0 1 0 AEEES(1)DQEAER 140.63 0.0001831 3105600 0 0 0 183.16 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 190.6300565 0 0 0 0 0 0 0 (ac)AKS(ph)PENSTLEEILGQYQR ddPTM_HeLa_CUDC101_4h_R1 2 AKSPENSTLEEILGQYQR 18 1 Q86SQ7-2;Q86SQ7-3;Q86SQ7-4;Q86SQ7 Q86SQ7-2 SDCCAG8 Serologically defined colon cancer antigen 8 1 0 AKS(0.974)PENS(0.019)T(0.007)LEEILGQYQR;AKS(0.995)PENS(0.002)T(0.002)LEEILGQYQR ; 73.36 4.87E-05 12899800 2030.47 1753.36 1296.86 1721.15 2039.79 1644.94 1617.34 1506.57 1789.63 1669.04 TRUE FALSE FALSE 1792.461385 1807.378943 1366.972174 1791.345936 1889.318756 1613.56551 1679.721346 1678.071839 1715.860694 1659.112476 1.08037364 1.089364928 0.823917724 1.079701324 1.138752666 0.972547391 1.012421623 1.011427413 1.034203961 1 10.69619598 (ac)AS(ph)CASIDIEDATQHLR ddPTM_HeLa_CUDC101_4h_R1 1 ASCASIDIEDATQHLR 16 0 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 0 AS(0.785)CAS(0.215)IDIEDATQHLR 109.72 0.00064514 6120400 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)AS(ph)PSSFTYYCPPSSSPVWSEPLYSLRPEHAR ddPTM_HeLa_CUDC101_4h_R1 1 ASPSSFTYYCPPSSSPVWSEPLYSLRPEHAR 31 1 P49356 P49356 FNTB Protein farnesyltransferase subunit beta 1 0 AS(0.331)PS(0.331)S(0.331)FT(0.005)Y(0.001)YCPPSSSPVWSEPLYSLRPEHAR 92.833 8.74E-17 40283000 0 0 0 0 65.351 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 60.53018693 0 0 0 0 0 0 (ac)ASGEHS(ph)PGSGAAR ddPTM_HeLa_CUDC101_4h_R1 3 ASGEHSPGSGAAR 13 0 Q9H4A4;A6NKB8 Q9H4A4 RNPEP Aminopeptidase B 1 0 AS(0.02)GEHS(0.974)PGS(0.006)GAAR;AS(0.007)GEHS(0.989)PGS(0.004)GAAR;AS(0.093)GEHS(0.899)PGS(0.008)GAAR ;; 111.88 1.82E-55 21704180 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)ASTITGS(ph)QDCIVNHR ddPTM_HeLa_CUDC101_4h_R1 1 ASTITGSQDCIVNHR 15 0 Q16600 Q16600 ZNF239 Zinc finger protein 239 1 0 AS(0.002)T(0.003)IT(0.016)GS(0.98)QDCIVNHR 84.173 0.00084577 2908800 428.71 569.29 568.24 365.33 377.13 474.2 381.6 482.72 496.13 412.43 TRUE FALSE FALSE 378.4572637 586.8291501 598.9607732 380.2297365 349.3098712 465.1554251 396.3184398 537.6708936 475.6793114 409.976848 0.923118624 1.431371437 1.460962433 0.927441972 0.852023408 1.134589495 0.966684928 1.31146648 1.16025896 1 8.679398631 (ac)AT(ph)SATSPHAPGFPAEGR ddPTM_HeLa_CUDC101_4h_R1 1 ATSATSPHAPGFPAEGR 17 0 Q5VVL2;Q9NUP7-2;Q9NUP7 Q5VVL2 TRMT13 tRNA:m(4)X modification enzyme TRM13 homolog 1 0 AT(0.407)S(0.407)AT(0.177)S(0.008)PHAPGFPAEGR 107.39 1.04E-10 15893000 225.08 102.77 282.78 319.07 230.51 253.66 278.55 120.42 245.33 237.1 TRUE FALSE FALSE 198.6964636 105.9362219 298.0679422 332.0830537 213.5057365 248.8218581 289.2937668 134.128126 235.2173936 235.6897187 0.843042559 0.449473242 1.264662472 1.408984047 0.905876327 1.055717914 1.227434818 0.569087726 0.997995988 1 7.880745016 VNIFGVESGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VNIFGVESGKK 11 1 H0YMF9;H0YL19;H0YN81;Q9GZS3 H0YMF9 WDR61 "WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed" 0 1 ; VNIFGVESGK(1)K;VNIFGVESGK(1)K 143.97 0.0001468 821630 723.21 232.04 240.56 308.85 641.037 376.78 730.01 491.07 548.43 437.17 FALSE TRUE FALSE 638.4364201 239.1888774 253.5654013 321.446238 593.7489776 369.5935493 758.1667302 546.9714238 525.8234833 434.5696934 1.469123204 0.550403954 0.583486159 0.739688577 1.366291729 0.850481649 1.744637838 1.258650643 1.209986548 1 8.763443755 -4.761859055 24.99999995 1.088484722 1.501644217 0.238572366 0.329485282 14.53576164 866190.8929 0.052360345 0.172729856 1.73E-05 4.761859055 0.413159495 VNKDDIQK(ac)MNPPK ddPTM_HeLa_CUDC101_4h_R1 1 VNKDDIQKMNPPK 13 2 P35579;B1AH99;Q5BKV1 P35579 MYH9 Myosin-9 0 1 VNKDDIQK(1)MNPPK 126.09 0.0034237 1925100 2243.7 1989.9 1810.3 2450.2 2253.5 2206.9 2015.7 2147.7 2309 2110.7 FALSE TRUE FALSE 1980.696887 2051.20646 1908.170294 2550.129747 2087.263795 2164.807059 2093.446224 2392.185487 2213.822043 2098.145463 0.944022673 0.977628338 0.909455673 1.215420852 0.994813673 1.031771676 0.99776029 1.140142821 1.055132774 1 11.03489899 (ac)ATAT(ph)PVPPR ddPTM_HeLa_CUDC101_4h_R1 1 ATATPVPPR 9 0 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 1 0 AT(0.007)AT(0.993)PVPPR 48.602 0.033306 10981000 262.78 134.45 136.86 140.18 50.972 155.66 107.14 137.56 170.69 0 TRUE FALSE FALSE 231.9773267 138.5922451 144.2590656 145.8971463 47.21189711 152.6910448 111.2724257 153.2192744 163.654086 0 0 (ac)ESNHKSGDGLSGT(ph)QK ddPTM_HeLa_CUDC101_4h_R1 1 ESNHKSGDGLSGTQK 15 1 Q5T0W7;Q9NQ94-6;Q9NQ94-2;Q9NQ94 Q5T0W7 A1CF APOBEC1 complementation factor 1 0 ESNHKSGDGLS(0.164)GT(0.836)QK 61.344 0.011632 26295000 1629.3 2051.1 1785.2 1812.9 2091.5 1946 1773.9 1626.7 1853.2 2088.7 TRUE FALSE FALSE 1438.315924 2114.29196 1881.713312 1886.837898 1937.214212 1908.883292 1842.319917 1811.876953 1776.810312 2076.27632 0.692738202 1.018309528 0.906292334 0.908760496 0.933023314 0.919378251 0.887319236 0.872656946 0.855767749 1 11.01978274 (ac)GDS(ph)DDEYDR ddPTM_HeLa_CUDC101_4h_R1 2 GDSDDEYDR 9 0 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;A0A087X0F4 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 0 GDS(1)DDEYDR;GDS(1)DDEYDR ; 82.417 0.018335 19130000 0 0 0 0 64.252 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 59.51225797 0 0 0 0 0 0 (ac)MDGFAGSLDDSIS(ph)AASTSDVQDR ddPTM_HeLa_CUDC101_4h_R1 1 MDGFAGSLDDSISAASTSDVQDR 23 0 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 MDGFAGS(0.005)LDDS(0.01)IS(0.568)AAS(0.384)T(0.025)S(0.007)DVQDR 158.02 1.98E-46 6284200 0 62.895 0 0 0 0 122.17 0 120.67 0 TRUE FALSE FALSE 0 64.8327204 0 0 0 0 126.8821378 0 115.6959315 0 0 (ac)MDS(ph)AGQDINLNSPNKGLLSDSMTDVPVDTGVAAR ddPTM_HeLa_CUDC101_4h_R1 1 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAAR 34 1 O43399-2;O43399-4;O43399;O43399-3;O43399-5;O43399-7;A0A087WYR3;A0A087WZ51 O43399-2 TPD52L2 Tumor protein D54 1 0 MDS(0.992)AGQDINLNS(0.004)PNKGLLS(0.001)DS(0.001)MT(0.001)DVPVDTGVAAR 47.605 0.00010011 8058800 800.46 772.31 807.65 465.55 1047.9 929.8 924.84 833.37 810.78 879.23 TRUE FALSE FALSE 706.6312922 796.1039557 851.314002 484.5371413 970.5985047 912.0656142 960.5113886 928.2374722 777.3593052 874.0003009 0.808502344 0.910873778 0.974043145 0.554390131 1.110524223 1.043552975 1.098982904 1.062056239 0.889426817 1 9.771489966 (ac)MEPAPARS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 MEPAPARSPR 10 1 P29590;P29590-5;P29590-9;P29590-3;P29590-8;P29590-4;P29590-14;P29590-10;P29590-11;P29590-12;P29590-13;H3BT57;P29590-2 P29590;P29590-11;P29590-2 PML Protein PML 1 0 MEPAPARS(1)PR;MEPAPARS(1)PR;MEPAPARS(1)PR ;; 76.332 0.011865 26562900 2132.45 1685.85 2406.52 2058.48 1623.79 2249.41 1999.82 1685.81 2506.31 1915.22 TRUE FALSE FALSE 1882.487444 1737.78904 2536.623751 2142.433712 1504.006247 2206.506252 2076.953727 1877.715796 2402.998841 1903.828186 0.988790615 0.912786696 1.332380605 1.125329338 0.789990535 1.158983919 1.090935486 0.986284272 1.262193121 1 10.89468757 (ac)MEPETALWGPDLQGPEQS(ph)PNDAHR ddPTM_HeLa_CUDC101_4h_R1 1 MEPETALWGPDLQGPEQSPNDAHR 24 0 Q9UEG4 Q9UEG4 ZNF629 Zinc finger protein 629 1 0 MEPETALWGPDLQGPEQS(1)PNDAHR 112.9 1.43E-08 2874400 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)MLTDSGGGGTS(ph)FEEDLDSVAPR ddPTM_HeLa_CUDC101_4h_R1 2 MLTDSGGGGTSFEEDLDSVAPR 22 0 Q8IWZ3;Q8IWZ3-4;Q8IWZ3-6;E9PDP5;D6RHC4;Q8IWZ3-5;Q8IWZ3-3;Q8IWZ3-2 Q8IWZ3 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 0 MLT(0.001)DS(0.001)GGGGT(0.128)S(0.871)FEEDLDSVAPR;MLTDSGGGGT(0.08)S(0.92)FEEDLDSVAPR ; 165.17 4.63E-49 2744300 0 0 78.453 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 82.69440649 0 0 0 0 0 0 0 0 (ac)MNTAPSRPS(ph)PTR ddPTM_HeLa_CUDC101_4h_R1 6 MNTAPSRPSPTR 12 1 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 0 MNTAPS(0.002)RPS(0.754)PT(0.244)R;MNTAPS(0.008)RPS(0.758)PT(0.234)R;MNTAPS(0.004)RPS(0.77)PT(0.227)R;MNTAPS(0.006)RPS(0.746)PT(0.248)R;MNTAPS(0.002)RPS(0.499)PT(0.499)R;MNTAPS(0.044)RPS(0.772)PT(0.183)R ;;;;; 78.529 0.00069561 701758300 4759.26 5804.59 6284.2 6367.51 4818.03 5130.65 4774.69 4722.68 5411.78 6199.17 TRUE FALSE FALSE 4201.386757 5983.422538 6623.942861 6627.204581 4462.613526 5032.791399 4958.851393 5260.290801 5188.704138 6162.297061 0.681789066 0.970972752 1.074914564 1.075443867 0.724180201 0.816707041 0.804708268 0.853624996 0.842008116 1 12.58925252 (ac)S(ph)DFDEFER ddPTM_HeLa_CUDC101_4h_R1 1 SDFDEFER 8 0 P26368-2;P26368 P26368-2 U2AF2 Splicing factor U2AF 65 kDa subunit 1 0 S(1)DFDEFER 57.281 0.026863 657970000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 VNQPASFAVSLNGAK ddPTM_HeLa_CUDC101_4h_R1 1 VNQPASFAVSLNGAK 15 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 220.53 1.21E-25 970740 264.65 131.44 52.632 192.22 258.75 267.49 67.414 104.63 132.79 236.37 FALSE FALSE TRUE 233.6281282 135.4895106 55.47744512 200.0595624 239.662528 262.3880739 70.01418056 116.5406563 127.31634 234.9640607 0.994314311 0.576639296 0.236110344 0.851447501 1.019996536 1.116715778 0.297978254 0.49599354 0.541854527 1 7.876296294 -7.272143985 23.11501722 0.997315123 0.665649701 0.005527992 0.304531792 283.1925097 611511.2025 0.048191998 0.055457907 5.34E-08 7.272143985 -0.331665422 (ac)S(ph)DS(ph)GEQNYGERES(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 SDSGEQNYGERESR 14 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 3 0 S(0.982)DS(0.987)GEQNY(0.031)GERES(1)R 60.158 0.0017748 0 0 0 0 66.775 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 69.49837313 0 0 0 0 0 0 0 (ac)S(ph)DSGEQNYGER ddPTM_HeLa_CUDC101_4h_R1 1 SDSGEQNYGER 11 0 P62995;P62995-2 P62995 TRA2B Transformer-2 protein homolog beta 1 0 S(0.999)DS(0.001)GEQNYGER 126.07 2.09E-07 102990000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)S(ph)FLFSSR ddPTM_HeLa_CUDC101_4h_R1 1 SFLFSSR 7 0 Q9H8S9-2;Q9H8S9 Q9H8S9-2 MOB1A MOB kinase activator 1A 1 0 S(1)FLFSSR 58.604 0.016931 2958900 149.72 110.74 156.28 191.16 0 141.01 138.76 131.69 210.59 126.35 TRUE FALSE FALSE 132.1700486 114.1517681 164.7289695 198.9563311 0 138.3204692 144.1120197 146.6810573 201.9093911 125.5984646 1.052322168 0.908862768 1.311552415 1.584066587 0 1.101291084 1.147402718 1.167857089 1.607578498 1 6.972675017 (ac)S(ph)LDIQSLDIQCEELSDAR ddPTM_HeLa_CUDC101_4h_R1 1 SLDIQSLDIQCEELSDAR 18 0 P13489;E9PR82;E9PMI1;E9PMA9;E9PMN0;E9PIK5;E9PMJ3;E9PLZ3;E9PIM9 P13489 RNH1 Ribonuclease inhibitor 1 0 S(1)LDIQSLDIQCEELSDAR 162.93 2.96E-11 3639400 0 179.43 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 184.9580256 0 0 0 0 0 0 0 0 0 (ac)S(ph)QGDSNPAAIPHAAEDIQGDDR ddPTM_HeLa_CUDC101_4h_R1 1 SQGDSNPAAIPHAAEDIQGDDR 22 0 P68402-3;P68402-2;P68402-4;P68402 P68402-3 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 1 0 S(0.5)QGDS(0.5)NPAAIPHAAEDIQGDDR 88.768 1.06E-09 41843000 0 0 0 62.217 0 139.22 0 0 0 0 TRUE FALSE FALSE 0 0 0 64.75447818 0 136.5646105 0 0 0 0 0 (ac)S(ph)S(ph)PASTPSRR ddPTM_HeLa_CUDC101_4h_R1 2 SSPASTPSRR 10 1 A0A3B3IT92;P33991;A0A3B3ITP6;A0A3B3IS57;E5RFR3;E5RG53;A0A3B3IS88 A0A3B3IT92 MCM4 DNA replication licensing factor MCM4 2 0 S(1)S(1)PASTPSRR;S(0.864)S(0.894)PAS(0.227)T(0.015)PSRR ; 74.165 0.017531 4592600 0 54.799 157.3 0 64.266 0 0 0 0 0 TRUE FALSE FALSE 0 56.48729224 165.8041138 0 59.52522522 0 0 0 0 0 0 VNTLIRPDGEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VNTLIRPDGEKK 12 2 H7BY10;K7EJV9;K7ERT8;A8MUS3;P62750;K7EMA7 H7BY10 RPL23A 60S ribosomal protein L23a 0 1 ; VNTLIRPDGEK(1)K;VNTLIRPDGEK(1)K 99.669 0.018973 20645500 17973.8 8338.9 7740.5 6920.8 18728.4 15513.5 19798 15481.7 15770.3 11375.7 FALSE TRUE FALSE 15866.93841 8595.811625 8158.974844 7203.060138 17346.84324 15217.60583 20561.61549 17244.07415 15120.24156 11308.03683 1.403155884 0.760150657 0.72152001 0.636985911 1.534027834 1.345733664 1.818318759 1.524939687 1.33712348 1 13.46506087 -5.589414659 17.71093168 1.085292249 1.563756112 0.503534237 0.269183871 3.589984433 954.774652 0.044985507 0.089971381 2.57E-06 5.589414659 0.478463863 (ac)S(ph)SPAS(ph)TPSRR ddPTM_HeLa_CUDC101_4h_R1 1 SSPASTPSRR 10 1 A0A3B3IT92;P33991;A0A3B3ITP6;A0A3B3IS57;E5RFR3;E5RG53;A0A3B3IS88 A0A3B3IT92 MCM4 DNA replication licensing factor MCM4 2 0 S(0.7)S(0.564)PAS(0.706)T(0.022)PS(0.008)RR 52.79 0.03196 4145600 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)S(ph)SPASTPSR ddPTM_HeLa_CUDC101_4h_R1 2 SSPASTPSR 9 0 A0A3B3IT92;P33991;A0A3B3ITP6;A0A3B3IS57;E5RFR3;E5RG53;A0A3B3IS88 A0A3B3IT92 MCM4 DNA replication licensing factor MCM4 1 0 S(0.499)S(0.499)PAS(0.001)TPSR;S(0.499)S(0.499)PAS(0.002)TPSR ; 79.713 0.02384 29734430 0 0 0 52.277 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 54.40908202 0 0 0 0 0 0 0 FTPVASK(ac)FSPGAPGGSGSQPNQK ddPTM_HeLa_CUDC101_4h_R1 2 FTPVASKFSPGAPGGSGSQPNQK 23 1 Q15942-2;Q15942;H0Y2Y8;H7C3D3 Q15942-2 ZYX Zyxin 0 1 ; FTPVASK(1)FSPGAPGGSGSQPNQK;FTPVASK(1)FSPGAPGGSGSQPNQK 198.47 7.60E-22 2172890 1270.47 1508.57 1747.66 1622.47 2281.14 2231.8 2446.04 3990.8 891.67 1079.22 FALSE TRUE FALSE 1121.547433 1555.047254 1842.143786 1688.64134 2112.864847 2189.232133 2540.384582 4445.096541 854.9149852 1072.800751 1.045438709 1.449521033 1.717135063 1.574049363 1.969484868 2.040669836 2.367992918 4.143450249 0.796900062 1 10.06716644 -1 0.375305338 1.019558767 40.74446593 0.921725034 0.254831138 10.18305809 0.124336092 0.065207931 296.5927514 0.1 1 39.72490717 up (ac)S(ph)SPASTPSRR ddPTM_HeLa_CUDC101_4h_R1 2 SSPASTPSRR 10 1 A0A3B3IT92;P33991;A0A3B3ITP6;A0A3B3IS57;E5RFR3;E5RG53;A0A3B3IS88 A0A3B3IT92 MCM4 DNA replication licensing factor MCM4 1 0 S(0.498)S(0.498)PAS(0.004)TPSRR;S(0.5)S(0.5)PASTPSRR ; 87.696 0.0051879 12532400 0 0 124.18 115.27 113.83 0 0 69.274 167.02 0 TRUE FALSE FALSE 0 0 130.8935464 119.9712088 105.4329877 0 0 77.15987214 160.1353649 0 0 (ac)S(ph)SSAGSGHQPSQSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSAGSGHQPSQSR 14 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 0 S(0.489)S(0.489)S(0.021)AGSGHQPSQSR 64.103 0.039172 317180 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)SDSGEQNYGERES(ph)R ddPTM_HeLa_CUDC101_4h_R1 4 SDSGEQNYGERESR 14 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 1 0 SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R;SDSGEQNYGERES(1)R ;;; 119.25 7.47E-24 480431200 0 0 59.503 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 62.71991217 0 0 0 0 0 0 0 0 (ac)SGS(ph)PSLTAR ddPTM_HeLa_CUDC101_4h_R1 1 SGSPSLTAR 9 0 P98175-5 P98175-5 RBM10 RNA-binding protein 10 1 0 S(0.179)GS(0.794)PS(0.027)LTAR 70.028 0.0054318 17889000 81.382 188.21 93.866 103.69 47.852 147.62 129.16 0 0 0 TRUE FALSE FALSE 71.84252533 194.008527 98.94067989 107.9189264 44.32205329 144.8043945 134.1417445 0 0 0 0 (ac)SGYSS(ph)DRDR ddPTM_HeLa_CUDC101_4h_R1 4 SGYSSDRDR 9 1 P17844-2;P17844;J3QR02;J3KRX8;J3QRQ7;X6RLV5;J3QKN9;J3QS79 P17844-2 DDX5 Probable ATP-dependent RNA helicase DDX5 1 0 SGYS(0.1)S(0.9)DRDR;SGYS(0.005)S(0.995)DRDR;SGYS(0.193)S(0.807)DRDR;SGYS(0.147)S(0.853)DRDR ;;; 88.134 0.0032107 967976000 0 69.526 0 0 0 0 0 0 70.852 0 TRUE FALSE FALSE 0 71.66801365 0 0 0 0 0 0 67.93145057 0 0 (ac)SS(ph)PAST(ph)PSRR ddPTM_HeLa_CUDC101_4h_R1 1 SSPASTPSRR 10 1 A0A3B3IT92;P33991;A0A3B3ITP6;A0A3B3IS57;E5RFR3;E5RG53;A0A3B3IS88 A0A3B3IT92 MCM4 DNA replication licensing factor MCM4 2 0 S(0.145)S(0.855)PAS(0.046)T(0.791)PS(0.163)RR 67.997 0.022734 2601800 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 VPDVDIK(ac)GPK ddPTM_HeLa_CUDC101_4h_R1 2 VPDVDIKGPK 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 1 ; VPDVDIK(1)GPK;VPDVDIK(1)GPK 117.7 0.0035388 2106680 1927.46 1605.15 1211.94 1649.17 2878.5 2280.4 2608.14 2906.5 2409 1624.63 FALSE TRUE FALSE 1701.526061 1654.602769 1277.461142 1716.430281 2666.15879 2236.905169 2708.736833 3237.364212 2309.7 1614.966629 1.053598279 1.024543009 0.791013956 1.062827089 1.650906429 1.385109221 1.677271088 2.004601305 1.430184352 1 10.65728864 -5.053181403 0.799267081 1.004093421 2.030248504 0.678376477 0.206620436 0.334300085 0.284859342 0.026647652 0.239384302 8.85E-06 5.053181403 1.026155083 VPDVEIK(ac)GPK ddPTM_HeLa_CUDC101_4h_R1 2 VPDVEIKGPK 10 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 0 1 ; VPDVEIK(1)GPK;VPDVEIK(1)GPK 90.108 0.023516 730480 596.11 641.48 466.93 511.02 995.33 765.8 786.97 656.81 1274.11 894.79 FALSE TRUE FALSE 526.2348894 661.2432385 492.1736482 531.8616044 921.9064889 751.1936409 817.3236965 731.5785955 1221.590647 889.4677493 0.591628971 0.743414518 0.553335013 0.597954906 1.036469832 0.844542865 0.91889076 0.822490299 1.373395098 1 9.796798486 -5.753590124 24.99803842 0.763128838 0.902186734 0.015452643 0.23613873 318.9730033 1015845.479 0.027370373 0.053952922 1.76E-06 5.753590124 0.139057896 (ac)SSAPRS(ph)PTPRPR ddPTM_HeLa_CUDC101_4h_R1 1 SSAPRSPTPRPR 12 2 Q9HBI1 Q9HBI1 PARVB Beta-parvin 1 0 S(0.002)S(0.001)APRS(0.603)PT(0.394)PRPR 46.282 0.028125 17031000 184.62 157.92 171.59 251.19 181.99 212.32 127.18 53.526 147.12 0 TRUE FALSE FALSE 162.9791235 162.785328 180.8666744 261.4346139 168.5649603 208.2703497 132.0853752 59.61918348 141.0556513 0 0 (ac)SSPAS(ph)TPSRR ddPTM_HeLa_CUDC101_4h_R1 1 SSPASTPSRR 10 1 A0A3B3IT92;P33991;A0A3B3ITP6;A0A3B3IS57;E5RFR3;E5RG53;A0A3B3IS88 A0A3B3IT92 MCM4 DNA replication licensing factor MCM4 1 0 SSPAS(0.914)T(0.061)PS(0.024)RR 90.434 0.0001545 101800000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)STEAQRVDDS(ph)PSTSGGSSDGDQR ddPTM_HeLa_CUDC101_4h_R1 2 STEAQRVDDSPSTSGGSSDGDQR 23 1 F8WF15;F8W8F0;C9J180;Q96LR5 F8WF15 UBE2E2 Ubiquitin-conjugating enzyme E2 E2 1 0 S(0.22)T(0.22)EAQRVDDS(0.257)PS(0.178)T(0.051)S(0.058)GGS(0.009)S(0.009)DGDQR;STEAQRVDDS(0.821)PS(0.1)T(0.028)S(0.036)GGS(0.011)S(0.004)DGDQR ; 83.666 3.68E-10 6436600 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)STNENANT(ph)PAAR ddPTM_HeLa_CUDC101_4h_R1 3 STNENANTPAAR 12 0 P52292;J3QLL0;J3KS65;J3QL07 P52292 KPNA2 Importin subunit alpha-1 1 0 STNENANT(1)PAAR;STNENANT(1)PAAR;STNENANT(1)PAAR ;; 188.15 1.09E-56 31508200 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)STSS(ph)LRR ddPTM_HeLa_CUDC101_4h_R1 2 STSSLRR 7 1 Q9Y6I3-3;Q9Y6I3 Q9Y6I3-3 EPN1 Epsin-1 1 0 ST(0.002)S(0.029)S(0.969)LRR;ST(0.032)S(0.032)S(0.936)LRR ; 55.37 0.03165 42148000 0 1178.59 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 1214.900961 0 0 0 0 0 0 0 0 0 (ac)TEVMMNTQPMEEIGLS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 6 TEVMMNTQPMEEIGLSPR 18 0 B5MBX5 B5MBX5 LBH 1 0 TEVMMNTQPMEEIGLS(1)PR;TEVMMNTQPMEEIGLS(1)PR;TEVMMNTQPMEEIGLS(1)PR;TEVMMNTQPMEEIGLS(1)PR;TEVMMNTQPMEEIGLS(1)PR;TEVMMNTQPMEEIGLS(1)PR ;;;;; 217.35 2.82E-72 21442500 65.346 0 126.152 76.542 0 0 0 0 0 0 TRUE FALSE FALSE 57.68624094 0 132.9721587 79.6637136 0 0 0 0 0 0 0 (ac)VDYSVWDHIEVS(ph)DDEDETHPNIDTASLFR ddPTM_HeLa_CUDC101_4h_R1 1 VDYSVWDHIEVSDDEDETHPNIDTASLFR 29 0 K7EQA9;K7EKQ2;Q16543;K7EJ06 K7EQA9 CDC37 "Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed" 1 0 VDY(0.18)S(0.2)VWDHIEVS(0.616)DDEDET(0.004)HPNIDTASLFR 47.616 1.07E-06 10141000 0 127.27 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 131.1910378 0 0 0 0 0 0 0 0 0 AAPEAS(ph)SPPASPLQHLLPGK ddPTM_HeLa_CUDC101_4h_R1 2 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 0 AAPEAS(0.972)S(0.026)PPAS(0.002)PLQHLLPGK;AAPEAS(0.93)S(0.07)PPASPLQHLLPGK ; 186.96 7.52E-12 140085000 5049.9 3103.6 2983.6 2873.4 5769 4531.2 4315.1 4255 5098.3 5038.5 TRUE FALSE FALSE 4457.958377 3199.218237 3144.902441 2990.589672 5343.432363 4444.774909 4481.534852 4739.372001 4888.145916 5008.530778 0.890073072 0.638753834 0.627909177 0.59709919 1.066866233 0.88744087 0.894780336 0.946259933 0.975964037 1 12.29017174 AAPS(ph)SEGDSCDGVEATEGPGSADTEEPK ddPTM_HeLa_CUDC101_4h_R1 1 AAPSSEGDSCDGVEATEGPGSADTEEPK 28 0 A0A2R8YDI1;A0A2R8Y852;P39880-6;P39880-4;P39880-5;P39880-2;P39880;P39880-3 A0A2R8YDI1 CUX1 Homeobox protein cut-like 1 1 0 AAPS(0.356)S(0.356)EGDS(0.282)CDGVEAT(0.006)EGPGSADTEEPK 67.396 0.00031719 0 696.18 826.75 899.4 687.62 694.84 815.82 816.88 725.83 798.33 922.41 TRUE FALSE FALSE 614.5748357 852.2211876 948.0242845 715.6641157 643.5830375 800.2595927 848.3873352 808.4555533 765.4224995 916.9234643 0.670257507 0.929435466 1.033918665 0.780505837 0.701893956 0.872765966 0.925254253 0.881704509 0.834772508 1 9.840657507 AAS(ph)DSNPAGPLR ddPTM_HeLa_CUDC101_4h_R1 1 AASDSNPAGPLR 12 0 Q9BUU2-2;Q9BUU2 Q9BUU2-2 METTL22 Methyltransferase-like protein 22 1 0 AAS(0.5)DS(0.5)NPAGPLR 120.29 0.0033298 13410000 2333.8 1693.4 1822.7 1850.4 1456.6 1839.8 1522.5 1899.6 1838.9 1839.9 TRUE FALSE FALSE 2060.235502 1745.571647 1921.240675 1925.86731 1349.14952 1804.70888 1581.223335 2115.842786 1763.099764 1828.956193 1.126454264 0.95440867 1.050457459 1.052987118 0.737660927 0.98674254 0.864549595 1.1568581 0.963992342 1 10.8368048 AAS(ph)PFR ddPTM_HeLa_CUDC101_4h_R1 4 AASPFR 6 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 0 AAS(1)PFR;AAS(1)PFR;AAS(1)PFR;AAS(1)PFR ;;; 122.74 0.019544 1914520000 11014.9 6518.4 7798.2 9853 7113.7 6845.6 7221.7 4809.5 7473.1 6541.4 TRUE FALSE FALSE 9723.75012 6719.224178 8219.79428 10254.84793 6588.936523 6715.031586 7500.243388 5356.994039 7165.055655 6502.491462 1.495388372 1.033330719 1.264099204 1.57706442 1.013294145 1.032685952 1.153441482 0.823837151 1.101893897 1 12.66677688 AAS(ph)YTEEDENHTAK ddPTM_HeLa_CUDC101_4h_R1 2 AASYTEEDENHTAK 14 0 Q14126 Q14126 DSG2 Desmoglein-2 1 0 AAS(0.821)Y(0.005)T(0.092)EEDENHT(0.082)AK;AAS(0.997)YT(0.003)EEDENHTAK ; 130.47 0.00053211 30653700 5269.6 4483.7 3739.2 4392.5 3950.1 4130 3586.5 3543.4 3576.9 3418.3 TRUE FALSE FALSE 4651.905476 4621.837483 3941.352462 4571.645136 3658.708993 4051.227131 3724.832506 3946.766333 3429.458668 3397.9678 1.369025768 1.360176951 1.1599146 1.345405668 1.076734451 1.192250006 1.096194174 1.161507868 1.009267559 1 11.73045647 VPLVAEKPLK(ac)EPK ddPTM_HeLa_CUDC101_4h_R1 2 VPLVAEKPLKEPK 13 2 P41250 P41250 GARS Glycine--tRNA ligase 0 1 ; VPLVAEK(0.002)PLK(0.998)EPK;VPLVAEKPLK(1)EPK 114.87 0.00722 3430200 4523.8 1712.13 1796.17 1426.1 3687.4 3447.4 4388.7 3309.9 3544.6 2747.9 FALSE TRUE FALSE 3993.527022 1764.878696 1893.276383 1484.262522 3415.387848 3381.646589 4557.973629 3686.685637 3398.490088 2731.555369 1.461997464 0.646107605 0.693112944 0.543376327 1.250345458 1.23799306 1.668636734 1.349665352 1.244159327 1 11.41550695 -5.04354941 2.733051822 1.088365152 1.50506145 0.286843452 0.300907987 0.362928755 5.326762487 0.051701855 0.170380256 9.05E-06 5.04354941 0.416696297 AASIENVLQDS(ph)SPEHCGR ddPTM_HeLa_CUDC101_4h_R1 2 AASIENVLQDSSPEHCGR 18 0 K7EPJ5;O60291-4;O60291;O60291-3;O60291-2 K7EPJ5 MGRN1 E3 ubiquitin-protein ligase MGRN1 1 0 AASIENVLQDS(0.65)S(0.35)PEHCGR;AASIENVLQDS(0.645)S(0.355)PEHCGR ; 165.53 6.09E-06 16252100 7967.1 6409.2 4655.1 5083.3 7678.7 6977.7 5557.5 4729 6016 5438.6 TRUE FALSE FALSE 7033.208615 6606.659855 4906.768787 5290.618946 7112.257599 6844.611998 5771.854637 5267.330245 5768.017934 5406.250965 1.30094009 1.222040911 0.907610249 0.978611422 1.315561864 1.266055172 1.067626101 0.974303686 1.066916422 1 12.40041277 ACTGLSGPGSGSKS(ph)PPATR ddPTM_HeLa_CUDC101_4h_R1 2 ACTGLSGPGSGSKSPPATR 19 1 I3L2J0;I3L2I4 I3L2J0 CIC 1 0 ACTGLSGPGS(0.001)GS(0.024)KS(0.914)PPAT(0.06)R;ACTGLSGPGS(0.041)GS(0.134)KS(0.82)PPAT(0.005)R ; 81.329 0.0032931 61364000 4873.6 4226.7 5175.4 5071.6 5530.4 4784 4473.7 6388.4 5209.9 5755.2 TRUE FALSE FALSE 4302.323996 4356.919617 5455.197779 5278.441769 5122.43341 4692.753171 4646.252108 7115.629633 4995.145717 5720.967814 0.752027303 0.761570377 0.953544567 0.922648395 0.89537882 0.820272605 0.812144424 1.243780749 0.873129491 1 12.48204351 ADSGPTQPPLS(ph)LSPAPETK ddPTM_HeLa_CUDC101_4h_R1 1 ADSGPTQPPLSLSPAPETK 19 0 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5;A0A0C4DH09 O15027 SEC16A Protein transport protein Sec16A 1 0 ADSGPTQPPLS(0.499)LS(0.499)PAPET(0.002)K 74.678 0.01043 15354000 2667.2 2155.8 2231.7 2176 2448.3 2342.6 2083.4 2294.3 2749.9 2356.3 TRUE FALSE FALSE 2354.554859 2222.217643 2352.352453 2264.746685 2267.693787 2297.918808 2163.757436 2555.473838 2636.547958 2342.284623 1.005238576 0.948739372 1.004298295 0.966896449 0.968154666 0.981058743 0.923780746 1.091017639 1.125630904 1 11.19370068 AEAEAGS(ph)PRPDPR ddPTM_HeLa_CUDC101_4h_R1 4 AEAEAGSPRPDPR 13 1 A0A075B730;P58107 A0A075B730;P58107 EPPK1 Epiplakin 1 0 AEAEAGS(1)PRPDPR;AEAEAGS(1)PRPDPR;AEAEAGS(1)PRPDPR;AEAEAGS(1)PRPDPR ;;; 91.076 0.0094674 661115000 29162.6 26578.2 25479 26363.5 27967.1 27146.2 25922.3 27868.3 26676.3 25802.3 TRUE FALSE FALSE 25744.20424 27397.04284 26856.47181 27438.71748 25904.02275 26628.43146 26922.13179 31040.71462 25576.69162 25648.82677 1.00371859 1.068159689 1.047083831 1.069784506 1.009949616 1.038192963 1.049643792 1.210219668 0.997187585 1 14.64660522 AEDGATPS(ph)PSNETPK ddPTM_HeLa_CUDC101_4h_R1 2 AEDGATPSPSNETPK 15 0 P29966 P29966 MARCKS Myristoylated alanine-rich C-kinase substrate 1 0 AEDGAT(0.042)PS(0.466)PS(0.466)NET(0.026)PK;AEDGAT(0.001)PS(0.994)PS(0.005)NETPK ; 198.95 1.60E-32 725830000 3878.3 22952.1 1155.5 8249.5 4190.2 4922.5 3673.7 3403.8 5124.4 7273.5 TRUE FALSE FALSE 3423.691553 23659.227 1217.969825 8585.950267 3881.097294 4828.611514 3815.39584 3791.274833 4913.170063 7230.236899 0.473524118 3.27226166 0.168455037 1.187506079 0.536787017 0.667835865 0.527699976 0.524363847 0.679530994 1 12.8198272 AEEQQLPPPLSPPSPST(ph)PNHR ddPTM_HeLa_CUDC101_4h_R1 1 AEEQQLPPPLSPPSPSTPNHR 21 0 A0A494BZV2;Q6WCQ1-2;Q6WCQ1;J3KSW8;Q6WCQ1-3;A0A1W2PPU9 A0A494BZV2 MPRIP Myosin phosphatase Rho-interacting protein 1 0 AEEQQLPPPLS(0.005)PPS(0.323)PS(0.099)T(0.573)PNHR 157.56 4.63E-07 19986000 2176.3 1559.7 1442.8 1514.7 2517.1 2424.7 2002.2 2108.1 2115.2 2447.6 TRUE FALSE FALSE 1921.197413 1607.752508 1520.802132 1576.476013 2331.418548 2378.452887 2079.425525 2348.077583 2028.010561 2433.041566 0.789627863 0.660799442 0.625062125 0.647944546 0.958232108 0.977563606 0.854660912 0.965079107 0.833528941 1 11.24854525 AENNS(ph)EVGASGYGVPGPTWDR ddPTM_HeLa_CUDC101_4h_R1 1 AENNSEVGASGYGVPGPTWDR 21 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 1 0 AENNS(1)EVGASGYGVPGPTWDR 171.29 2.30E-09 13433000 1780.4 1048.9 1041.3 972.86 1217.6 1019.6 897.11 1305.5 1087.1 822.96 TRUE FALSE FALSE 1571.704211 1081.215366 1097.595828 1012.537436 1127.780074 1000.152829 931.7118332 1454.112843 1042.289278 818.0649973 1.921246131 1.321674157 1.341697581 1.237722478 1.378594705 1.222583575 1.138921524 1.777502824 1.274091033 1 9.676071663 AEPPKPEVVDSTESIPVS(ph)DEDSDAMVDDPNDEDFVPFRPR ddPTM_HeLa_CUDC101_4h_R1 1 AEPPKPEVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPR 40 2 A6NHN7;A6NHB5;A6NL54;Q14202-2;Q14202;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 0 AEPPKPEVVDS(0.002)T(0.002)ES(0.02)IPVS(0.774)DEDS(0.202)DAMVDDPNDEDFVPFRPR 76.329 5.47E-08 6218500 624.99 676.44 405.64 380.29 624.75 545 510.46 242.96 704.7 454.06 TRUE FALSE FALSE 551.7296196 697.2803146 427.5701254 395.79987 578.6634372 534.605033 530.1486132 270.6175843 675.6519677 451.3592309 1.222373626 1.544845584 0.947294519 0.876906559 1.282046312 1.184433587 1.174560255 0.599561426 1.496927328 1 8.818132303 AESPESSAIESTQS(ph)TPQK ddPTM_HeLa_CUDC101_4h_R1 1 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 0 AESPESSAIEST(0.004)QS(0.498)T(0.498)PQK 118.33 9.67E-05 4927000 1614.2 1300 1281.6 1267.7 1321.9 1591 1440.9 1360.6 1224.6 1489.7 TRUE FALSE FALSE 1424.985923 1340.051459 1350.887173 1319.402285 1224.386071 1560.654326 1496.475996 1515.485204 1174.12147 1480.839198 0.962282687 0.904927058 0.912244337 0.89098282 0.826819058 1.053898578 1.010559416 1.023396197 0.792875736 1 10.53219927 AESPS(ph)PAPPPGLR ddPTM_HeLa_CUDC101_4h_R1 2 AESPSPAPPPGLR 13 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 0 AES(0.394)PS(0.606)PAPPPGLR;AES(0.227)PS(0.773)PAPPPGLR ; 150.49 0.00032575 369770000 4164 3806.1 3618.2 3944.9 3907.8 3602.1 3140.4 3851.9 3633.7 3835.5 TRUE FALSE FALSE 3675.902232 3923.36143 3813.810836 4105.790073 3619.529379 3533.395944 3261.52628 4290.384726 3483.917348 3812.686275 0.964123971 1.02902813 1.000294952 1.076875929 0.949338371 0.926747099 0.855440507 1.125291833 0.91376974 1 11.89659211 AGGAGVPAFYTPTGYGTLVQEGGS(ph)PIKYNK ddPTM_HeLa_CUDC101_4h_R1 2 AGGAGVPAFYTPTGYGTLVQEGGSPIKYNK 30 1 P55809 P55809 OXCT1 "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial" 1 0 AGGAGVPAFY(0.001)T(0.003)PT(0.034)GY(0.097)GT(0.034)LVQEGGS(0.831)PIKYNK;AGGAGVPAFY(0.001)T(0.008)PT(0.075)GY(0.261)GT(0.311)LVQEGGS(0.342)PIKYNK ; 94.807 4.29E-09 74504000 4706 4744.1 3238.4 3386.6 4067.3 4024.2 3525.8 3146.2 3796.7 3625.6 TRUE FALSE FALSE 4154.369814 4890.260098 3413.4777 3524.720186 3767.263382 3947.44509 3661.791287 3504.350691 3640.198419 3604.03477 1.152699704 1.356884828 0.947126739 0.977992836 1.045290521 1.095284963 1.016025516 0.972340977 1.010034212 1 11.81539721 AGGSAALS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 3 AGGSAALSPSK 11 0 Q92522 Q92522 H1FX Histone H1x 1 0 AGGSAALS(0.991)PS(0.009)K;AGGSAALS(0.964)PS(0.036)K;AGGS(0.003)AALS(0.908)PS(0.089)K ;; 169.89 9.16E-07 743086000 26449.7 16308.5 13467.7 20890.5 18291.7 18723.5 14662.3 12085.2 10065.7 10430.1 TRUE FALSE FALSE 23349.30626 16810.94555 14195.8046 21742.50489 16942.35773 18366.38043 15227.82982 13460.93032 9650.787586 10368.0613 2.252041687 1.621416489 1.369186021 2.097065619 1.6340912 1.771438256 1.468724902 1.298307362 0.930818916 1 13.33985853 AGLY(ph)S(ph)DVY(ph)KT(ph)TDPK ddPTM_HeLa_CUDC101_4h_R1 1 AGLYSDVYKTTDPK 14 1 Q9NR48;Q9NR48-2 Q9NR48 ASH1L Histone-lysine N-methyltransferase ASH1L 4 0 AGLY(0.999)S(0.996)DVY(0.912)KT(0.58)T(0.513)DPK 44.457 0.003356 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 AGQVVTIWAAGAGATHSPPT(ph)DLVWK ddPTM_HeLa_CUDC101_4h_R1 1 AGQVVTIWAAGAGATHSPPTDLVWK 25 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 AGQVVTIWAAGAGAT(0.061)HS(0.102)PPT(0.837)DLVWK 152.09 1.18E-10 16993000 939.82 1224.4 1063.6 973.83 1118.2 1138.6 730.71 863.82 994.66 962 TRUE FALSE FALSE 829.6557243 1262.122313 1121.101433 1013.546997 1035.712614 1116.883102 758.8937295 962.1537771 953.6596938 956.2779812 0.867588442 1.319827851 1.172359351 1.059887414 1.083066466 1.167948153 0.793591136 1.006144443 0.997262002 1 9.901286247 AGSISS(ph)EEVDGSQGNMMR ddPTM_HeLa_CUDC101_4h_R1 1 AGSISSEEVDGSQGNMMR 18 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 AGS(0.002)IS(0.344)S(0.654)EEVDGSQGNMMR 160.93 2.47E-05 4186600 952.9 1019.4 931.23 859.94 1061.5 775.41 929.79 890.04 788.38 1014.6 TRUE FALSE FALSE 841.2025065 1050.806506 981.5751106 895.0120702 983.1952598 760.6203462 965.6523118 991.3585559 755.8826427 1008.565114 0.834058699 1.041882662 0.973239206 0.887411291 0.974845596 0.754160872 0.957451629 0.982939566 0.749463403 1 9.978088514 AHSAPSSGTSSRPGS(ph)IR ddPTM_HeLa_CUDC101_4h_R1 2 AHSAPSSGTSSRPGSIR 17 1 B7Z896;F5H3M2;Q9BVG8-5;Q9BVG8-2;Q9BVG8;Q9BVG8-6 B7Z896 KIFC3 Kinesin-like protein;Kinesin-like protein KIFC3 1 0 AHSAPSS(0.012)GT(0.026)S(0.07)S(0.07)RPGS(0.821)IR;AHSAPS(0.007)S(0.021)GT(0.057)S(0.021)S(0.079)RPGS(0.815)IR ; 75.017 0.010717 4909900 742.22 230.038 262.45 246.9 620.3 806.61 712.46 406.25 489.63 629.45 TRUE FALSE FALSE 655.2180967 237.1251981 276.6388409 256.9696492 574.5417048 791.2252582 739.9398209 452.4958579 469.4472442 625.7060034 1.04716607 0.378972228 0.442122721 0.410687524 0.918229491 1.264531991 1.182567878 0.723176469 0.750268084 1 9.289341136 ALEYSNGIFDCQS(ph)PTSPFMGSLR ddPTM_HeLa_CUDC101_4h_R1 1 ALEYSNGIFDCQSPTSPFMGSLR 23 0 Q86W92-4;Q86W92;F5H6Q7;F5H0E0;F5H495;A0A0A0MTP2;Q86W92-5;Q86W92-2 Q86W92-4;Q86W92-2 PPFIBP1 Liprin-beta-1 1 0 ALEYSNGIFDCQS(0.806)PT(0.131)S(0.063)PFMGSLR 87.893 0.00019893 8216500 1112.7 1346.2 907.77 928.22 1353 1230.7 1008 661.58 1283.3 996.01 TRUE FALSE FALSE 982.2709927 1387.674826 956.8467921 966.0768237 1253.191886 1207.226448 1046.878898 736.891593 1230.401831 990.0856882 0.992107051 1.401570433 0.966428263 0.975750721 1.265740835 1.219315118 1.057361913 0.744270523 1.24272257 1 9.95140958 ALIQTCLNSPDS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 ALIQTCLNSPDSPPR 15 0 P11831 P11831 SRF Serum response factor 1 0 ALIQTCLNS(0.004)PDS(0.996)PPR 99.915 0.0058832 25730000 1317.5 776.44 865.29 737.08 860.1 1024.8 790.42 777.89 997.78 827.71 TRUE FALSE FALSE 1163.064647 800.3611961 912.0701948 767.1413083 796.6521366 1005.253647 820.9067642 866.4418533 956.6510861 822.7867441 1.413567556 0.972744398 1.108513477 0.932369552 0.968236475 1.221766946 0.997715107 1.053057623 1.162696279 1 9.684374741 VPTANVSVVDLTCR ddPTM_HeLa_CUDC101_4h_R1 4 VPTANVSVVDLTCR 14 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ;;; ;;; 194.06 1.39E-15 128155700 804.24 648.74 581.86 558.29 822.048 538.102 530.05 691.177 483.5 374.38 FALSE FALSE TRUE 709.9682063 668.7269105 613.3171116 581.0594793 761.4071568 527.8386009 550.4942061 769.8577958 463.5699254 372.1531711 1.907731175 1.796913106 1.648023339 1.561344963 2.045951011 1.418336969 1.479214068 2.068658433 1.24564282 1 8.539752719 -9.344459664 0.988882791 0.985569731 1.736029768 0.543803985 0.222581739 0.288477234 0.489541323 0.157104986 0.038132916 4.52E-10 9.344459664 0.750460037 ALNHS(ph)VEDIEPDLLTPR ddPTM_HeLa_CUDC101_4h_R1 1 ALNHSVEDIEPDLLTPR 17 0 Q8IWR0;I3L2K5 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A 1 0 ALNHS(1)VEDIEPDLLTPR 65.954 0.021918 2194000 2066.7 1794.6 1873.2 1854.3 2029.7 2091.4 1813.1 1691.8 2200.8 2033.1 TRUE FALSE FALSE 1824.444559 1849.889499 1974.470858 1929.926369 1879.973075 2051.51003 1883.031874 1884.387674 2110.082092 2021.007031 0.902740332 0.915330561 0.97697377 0.954933031 0.930215999 1.01509297 0.931729502 0.932400355 1.044074593 1 10.98085863 ALPQT(ph)PRPR ddPTM_HeLa_CUDC101_4h_R1 1 ALPQTPRPR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 ALPQT(1)PRPR 94.363 0.026929 189510000 2027.2 1377.1 1948 1619.1 1684.2 1888.6 1597.6 1548.6 1735 1751.5 TRUE FALSE FALSE 1789.574689 1419.526819 2053.314772 1685.133896 1559.959921 1852.578102 1659.219967 1724.886364 1663.482566 1741.082 1.027852042 0.815313017 1.179332606 0.9678659 0.89597154 1.064038398 0.952982092 0.990697948 0.955430339 1 10.76576844 VPVHDVTDASK ddPTM_HeLa_CUDC101_4h_R1 2 VPVHDVTDASK 11 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 ; ; 127.83 0.0023566 30209000 11645.6 8986.2 9804 9532.4 10085.4 10349.7 9553.5 9722.7 10029.7 9412 FALSE FALSE TRUE 10280.52042 9263.054171 10334.0339 9921.172475 9341.420135 10152.29672 9921.981695 10829.49287 9616.271521 9356.017005 1.098813781 0.990063845 1.104533466 1.060405562 0.998439841 1.085108835 1.060492054 1.157489652 1.027816807 1 13.19167877 ALSASHT(ph)DLAH ddPTM_HeLa_CUDC101_4h_R1 1 ALSASHTDLAH 11 0 Q07866-6;Q07866-4;Q07866-7;H0YG16;H0YJK1 Q07866-6 KLC1 Kinesin light chain 1 1 0 ALS(0.004)AS(0.252)HT(0.743)DLAH 154.84 0.0013081 110840000 5717.6 3619.8 3867.1 3857.5 5281.6 5065.4 4907.5 4942.2 4849 3937.9 TRUE FALSE FALSE 5047.391595 3731.321747 4076.167123 4014.825524 4891.98689 4968.785935 5096.783919 5504.800071 4649.122168 3914.477196 1.289416528 0.953210751 1.041305625 1.02563518 1.249716538 1.269335772 1.302034388 1.406266992 1.187673841 1 11.93460392 ALVEFESNPEET(ph)REPGSPPSVQR ddPTM_HeLa_CUDC101_4h_R1 4 ALVEFESNPEETREPGSPPSVQR 23 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 0 ALVEFES(0.005)NPEET(0.719)REPGS(0.267)PPS(0.01)VQR;ALVEFESNPEET(0.495)REPGS(0.495)PPS(0.01)VQR;ALVEFES(0.085)NPEET(0.838)REPGS(0.072)PPS(0.005)VQR;ALVEFES(0.064)NPEET(0.556)REPGS(0.364)PPS(0.016)VQR ;;; 104.68 3.11E-05 2928530000 6853.7 6788.6 5493.4 6245.4 7108.3 7163 5882.1 5404.45 6441.2 6669.8 TRUE FALSE FALSE 6050.319676 6997.74872 5790.389821 6500.114407 6583.934871 7026.377709 6108.974567 6019.670742 6175.69101 6630.127733 0.912549489 1.055447044 0.873345138 0.980390525 0.993032885 1.059765059 0.92139621 0.907926813 0.931458828 1 12.69482095 AMGDS(ph)DDEYDRR ddPTM_HeLa_CUDC101_4h_R1 2 AMGDSDDEYDRR 12 1 C9JUL9 C9JUL9 SRRT 1 0 AMGDS(0.994)DDEY(0.006)DRR;AMGDS(0.986)DDEY(0.014)DRR ; 70.628 0.029206 29423000 4093.6 3476.8 3768 3634.2 3547.6 3476.3 3257.7 3908.2 3640 3960.1 TRUE FALSE FALSE 3613.754413 3583.916087 3971.709478 3782.418384 3285.900616 3409.995369 3383.35058 4353.093691 3489.957659 3936.545149 0.918001516 0.91042169 1.008932789 0.9608472 0.834716862 0.866240635 0.859472063 1.105815766 0.886553444 1 11.94271431 ANDEANQSDT(ph)SVSLSEPK ddPTM_HeLa_CUDC101_4h_R1 1 ANDEANQSDTSVSLSEPK 18 0 O95684;O95684-2;A0A087WV25 O95684 FGFR1OP FGFR1 oncogene partner 1 0 ANDEANQS(0.2)DT(0.776)S(0.024)VSLSEPK 105.95 0.0033213 11581000 1494 1178.2 837.95 1121.8 1210.3 1209.1 979.22 946.95 1215.2 1117.4 TRUE FALSE FALSE 1318.875585 1214.498945 883.2521117 1167.551853 1121.01858 1186.038432 1016.988843 1054.74696 1165.108942 1110.753655 1.187370016 1.093400809 0.795182719 1.051134829 1.009241406 1.067778104 0.915584512 0.949577753 1.048935501 1 10.11732317 ANEAGGQVGPEAPRPPET(ph)SPEMR ddPTM_HeLa_CUDC101_4h_R1 2 ANEAGGQVGPEAPRPPETSPEMR 23 1 Q8N3D4;E9PIH6 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 ANEAGGQVGPEAPRPPET(0.5)S(0.5)PEMR;ANEAGGQVGPEAPRPPET(0.717)S(0.283)PEMR ; 56.681 0.016218 31780000 2443.3 1936.96 2243.3 1846.06 2277.4 2179 1642.22 1972.07 2291.5 1975.91 TRUE FALSE FALSE 2156.900078 1996.635442 2364.579584 1921.350306 2109.400739 2137.439205 1705.560976 2196.562477 2197.0434 1964.157199 1.098130067 1.01653546 1.203864734 0.978205974 1.073947004 1.088222066 0.868342399 1.118323156 1.118568005 1 10.93969468 ANSGGVDLDS(ph)SGEFASIEK ddPTM_HeLa_CUDC101_4h_R1 1 ANSGGVDLDSSGEFASIEK 19 0 A0A087X055;Q92766;Q92766-2;Q92766-5;Q92766-3 A0A087X055 RREB1 Ras-responsive element-binding protein 1 1 0 ANS(0.037)GGVDLDS(0.647)S(0.301)GEFAS(0.015)IEK 96.23 0.0021582 7859400 918.89 916.7 713.27 675.77 776.94 826.33 826.11 712.59 727.79 853.85 TRUE FALSE FALSE 811.1791071 944.9424404 751.8315337 703.3308215 719.6266841 810.569132 857.9733394 793.7083652 697.7901882 848.7712622 0.955709911 1.113306355 0.885788159 0.828645894 0.847845251 0.954991254 1.010841646 0.935126341 0.822118066 1 9.729232 APAGPSLEETSVS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 2 APAGPSLEETSVSSPK 16 0 A0A087WXZ7;K7EIX2;Q6AI08 A0A087WXZ7 HEATR6 HEAT repeat-containing protein 6 1 0 APAGPSLEETSVS(0.5)S(0.5)PK;APAGPSLEET(0.005)S(0.028)VS(0.909)S(0.058)PK ; 202.25 8.89E-24 66712000 5104.9 4286.9 4390.3 4861.5 4556.7 4348.6 4123 3854.9 4196.3 4479.1 TRUE FALSE FALSE 4506.511361 4418.974308 4627.652898 5059.772983 4220.561319 4265.6577 4282.025491 4293.726234 4023.326738 4452.458114 1.012140091 0.992479703 1.039347879 1.136399906 0.947917131 0.958045554 0.961721679 0.964349607 0.903619222 1 12.12038632 GATPGK(ac)ALVATPGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 GATPGKALVATPGKK 15 2 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 2 ; GATPGK(1)ALVATPGK(1)K;GATPGK(1)ALVATPGK(1)K 203.29 1.08E-19 7342500 1816.2 2322.23 2522.84 3104.03 3753.3 2935.47 3519.6 4668.9 1229.35 1538.98 FALSE TRUE FALSE 1603.307789 2393.775154 2659.232362 3230.62576 3476.426537 2879.480801 3655.352151 5200.388704 1178.675673 1529.826079 1.048032722 1.564736794 1.738257962 2.111760157 2.272432524 1.882227556 2.389390665 3.399333282 0.770463838 1 10.57915193 -1 0.208896224 0.801569699 12.72808748 0.880180988 0.257964193 12.43841562 0.145588961 0.238028705 49.62802786 0.1 1 11.92651778 up APQTLPS(ph)PEADALAGSK ddPTM_HeLa_CUDC101_4h_R1 1 APQTLPSPEADALAGSK 17 0 P31274 P31274 HOXC9 Homeobox protein Hox-C9 1 0 APQT(0.142)LPS(0.858)PEADALAGSK 102.79 0.00063105 0 785.3 602.94 795.11 428.32 502.71 650.74 422.79 485.92 714.43 519.78 TRUE FALSE FALSE 693.2483244 621.5158667 838.0960517 445.788741 465.6260848 638.3282187 439.0971519 541.2351686 684.980893 516.6883254 1.341714706 1.20288351 1.622053394 0.86278075 0.901174 1.235422183 0.84982983 1.047508028 1.325713896 1 9.013150476 APQTSSS(ph)PPPVRR ddPTM_HeLa_CUDC101_4h_R1 1 APQTSSSPPPVRR 13 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 APQT(0.001)S(0.003)S(0.011)S(0.985)PPPVRR 81.327 0.015362 216950000 830.62 591.1 711.43 464.61 715.41 640.35 522.15 708.54 540.72 602.05 TRUE FALSE FALSE 733.2559827 609.3110904 749.8920578 483.558804 662.6356296 628.1363906 542.2895004 789.1973296 518.4312927 598.4689798 1.225219698 1.018116412 1.253017421 0.807993096 1.107218005 1.049572178 0.906128001 1.318693794 0.866262597 1 9.22513266 APVSSTESVIQSNTPT(ph)PPPSQPLNETAEEESR ddPTM_HeLa_CUDC101_4h_R1 2 APVSSTESVIQSNTPTPPPSQPLNETAEEESR 32 0 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 0 APVSSTESVIQSNT(0.006)PT(0.994)PPPSQPLNETAEEESR;APVSSTESVIQSNTPT(1)PPPSQPLNETAEEESR ; 146.36 4.51E-17 21969000 1147.89 1159.25 1000.82 1048.69 1135.91 849.25 1087.95 926.93 1041.1 1028.69 TRUE FALSE FALSE 1013.336074 1194.965118 1054.927357 1091.460111 1052.116182 833.0519712 1129.912596 1032.447964 998.1854173 1022.571306 0.990968618 1.168588549 1.031641852 1.067368216 1.02889273 0.814663942 1.104971936 1.00965865 0.976152383 1 9.997985734 AQAVSEEEEEEEGKSS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 1 AQAVSEEEEEEEGKSSSPK 19 1 Q9GZR7-2;Q9GZR7;G3V529 Q9GZR7-2 DDX24 ATP-dependent RNA helicase DDX24 1 0 AQAVSEEEEEEEGKS(0.146)S(0.597)S(0.257)PK 74 0.0061335 10432000 1336.5 1562.8 1377.5 1512.8 1600.2 1647.1 1309.7 1468.9 1333.7 1698.9 TRUE FALSE FALSE 1179.837496 1610.948016 1451.971817 1574.498523 1482.156434 1615.684312 1360.215568 1636.113639 1278.724321 1688.794867 0.698626884 0.953903903 0.859768019 0.932320765 0.877641484 0.956708445 0.805435636 0.968805431 0.757181554 1 10.72177838 AQS(ph)PVSGPNVAHLTDGATLNDR ddPTM_HeLa_CUDC101_4h_R1 1 AQSPVSGPNVAHLTDGATLNDR 22 0 Q5THJ4-2;Q5THJ4 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 0 AQS(0.513)PVS(0.487)GPNVAHLTDGATLNDR 74.029 0.0015975 11992000 840.11 316.5 622.68 421.11 806.79 686.29 522.8 386.12 845.53 566.26 TRUE FALSE FALSE 741.6335793 326.2509899 656.3439643 438.284686 747.2747091 673.2001617 542.9645711 430.07434 810.6768955 562.8918603 1.317541843 0.579597988 1.166021416 0.77863035 1.327563537 1.195967128 0.96459837 0.76404434 1.440200068 1 9.136713976 ARCAATSMDNSMT(ph)S(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 ARCAATSMDNSMTSK 15 1 H3BPN5 H3BPN5 PPP4C 2 0 ARCAAT(0.037)S(0.024)MDNS(0.033)MT(0.957)S(0.95)K 50.452 0.0031582 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 AS(ph)LGS(ph)LEGEAEAEASSPK ddPTM_HeLa_CUDC101_4h_R1 3 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 AS(1)LGS(1)LEGEAEAEASSPK;AS(1)LGS(1)LEGEAEAEASSPK;AS(1)LGS(0.999)LEGEAEAEAS(0.001)SPK ;; 129.98 0.00062818 26204000 10653.3 9031.3 7520.8 7821.6 8409.8 8438.4 7791.9 6015.5 9868.6 9880.4 TRUE FALSE FALSE 9404.536323 9309.543648 7927.397197 8140.598656 7789.425809 8277.451579 8092.436193 6700.280205 9461.812131 9821.630941 0.957533059 0.947861277 0.807136538 0.828843876 0.793088832 0.842777705 0.823940162 0.682196291 0.963364658 1 13.2617469 AS(ph)PTLDFTER ddPTM_HeLa_CUDC101_4h_R1 2 ASPTLDFTER 10 0 A0A0D9SGJ6;J3KQV8;O43426 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 0 AS(1)PTLDFTER;AS(0.996)PT(0.004)LDFTER ; 180.66 4.78E-09 44076000 4316.6 3202.8 3193.8 3363.1 3786.2 3571.5 3564.6 2679.9 3694.1 3355.2 TRUE FALSE FALSE 3810.614692 3301.474472 3366.466489 3500.261755 3506.899569 3503.379588 3702.087816 2984.968983 3541.827634 3335.243121 1.142529811 0.989875206 1.009361647 1.049477243 1.051467447 1.050412057 1.109990391 0.89497793 1.061939866 1 11.70357621 AS(ph)PVPAPSSGLHAAVR ddPTM_HeLa_CUDC101_4h_R1 1 ASPVPAPSSGLHAAVR 16 0 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 AS(0.997)PVPAPS(0.002)S(0.001)GLHAAVR 132.51 0.00045046 24425000 391.53 67.468 134.51 124.3 297.72 312.72 144.66 0 240.91 0 TRUE FALSE FALSE 345.6354469 69.54660911 141.7820175 129.3694913 275.7577887 306.755387 150.2395847 0 230.9795878 0 0 VQESTKGPDEAK(ac)IK ddPTM_HeLa_CUDC101_4h_R1 2 VQESTKGPDEAKIK 14 2 O43390;B4DT28;O43390-4;O43390-3;O43390-2 O43390 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 1 ; VQESTKGPDEAK(1)IK;VQESTKGPDEAK(1)IK 136.14 0.0037001 48386000 9821.1 11503.2 11400 11683.6 12789.2 12558.2 12382.8 14013.1 9446.3 10027.7 FALSE TRUE FALSE 8669.885546 11857.59996 12016.31848 12160.10771 11845.7662 12318.67326 12860.40874 15608.29466 9056.919516 9968.054794 0.869767043 1.18956007 1.205482788 1.219907791 1.188372901 1.235815163 1.290162324 1.565831547 0.908594475 1 13.28309628 -4.896211338 0.353231607 0.928020288 1.706718502 0.761739913 0.093538875 1.700916603 0.204552361 0.04184577 0.528195113 1.27E-05 4.896211338 0.778698214 VQFQGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VQFQGKK 7 1 P05455 P05455 SSB Lupus La protein 0 1 ; VQFQGK(1)K;VQFQGK(1)K 111.04 0.0074371 32698000 17620.1 12360.1 7936.8 15250.4 12510.2 12189.1 12496.9 12083.1 4216 1869.56 FALSE TRUE FALSE 15554.69859 12740.90003 8365.887416 15872.37723 11587.34747 11956.61323 12978.90962 13458.59126 4042.214696 1858.439774 8.369761994 6.855697026 4.501564986 8.540700351 6.234986806 6.433683455 6.983766599 7.241876466 2.175058214 1 10.85987622 -9.362012057 0.97055678 0.827765825 6.943611518 0.780137184 1.120997823 0.197346672 0.317546841 0.875724768 0.203368311 4.34E-10 9.362012057 6.115845693 AS(ph)SHS(ph)SQTQGGGSVTK ddPTM_HeLa_CUDC101_4h_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.978)S(0.084)HS(0.897)S(0.042)QTQGGGSVTK 139.11 0.0011127 559080000 18516 7239.2 8967.8 8306.1 19083 15820 17989 10978 13551 13910 TRUE FALSE FALSE 16345.58255 7462.231171 9452.626394 8644.85866 17675.28511 15518.25986 18682.84176 12227.69115 12992.42204 13827.2627 1.182127143 0.539675229 0.683622391 0.625203907 1.278292421 1.122294426 1.351159818 0.884317555 0.939623577 1 13.75522796 AS(ph)SHSS(ph)QTQGGGSVTK ddPTM_HeLa_CUDC101_4h_R1 2 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.809)S(0.199)HS(0.088)S(0.896)QT(0.008)QGGGSVTK;AS(0.796)S(0.216)HS(0.435)S(0.546)QT(0.006)QGGGSVTK ; 110.61 0.0052573 34738000 12658.6 5790.2 6797.9 6697.8 12443.3 10990.4 11583.3 7711 9925.5 10013.4 TRUE FALSE FALSE 11174.7781 5968.589199 7165.415037 6970.965234 11525.38255 10780.77643 12030.07176 8588.789071 9516.366689 9953.839851 1.122660025 0.599626806 0.719864408 0.700329254 1.15788306 1.083077143 1.208586027 0.86286189 0.956049809 1 13.28103746 ASDPQS(ph)PPQVSR ddPTM_HeLa_CUDC101_4h_R1 2 ASDPQSPPQVSR 12 0 Q7L7X3;Q7L7X3-3;Q7L7X3-2 Q7L7X3 TAOK1 Serine/threonine-protein kinase TAO1 1 0 ASDPQS(0.838)PPQVS(0.162)R;ASDPQS(1)PPQVSR ; 198.81 2.79E-16 100762000 8980.9 9006.3 7558.5 7661.2 7710.6 7498.8 8072.8 8506.5 8702.4 8854.6 TRUE FALSE FALSE 7928.172516 9283.773428 7967.135373 7973.656851 7141.8044 7355.772884 8384.1706 9474.845576 8343.683389 8801.932445 0.900730898 1.054742636 0.905157523 0.905898438 0.811390504 0.835699766 0.952537486 1.076450613 0.947937676 1 13.10360458 ASLGS(ph)LEGEAEAEASS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 ASLGSLEGEAEAEASSPK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 0 AS(0.01)LGS(0.99)LEGEAEAEAS(0.256)S(0.744)PK;AS(0.019)LGS(0.981)LEGEAEAEAS(0.009)S(0.991)PK;ASLGS(1)LEGEAEAEAS(0.211)S(0.789)PK ;; 227.64 1.85E-32 235720000 18126.1 16508 14092.5 13992.8 15123.7 15948.6 14848.8 13314.8 15536.4 15570.1 TRUE FALSE FALSE 16001.38604 17016.59191 14854.38318 14563.48687 14008.05478 15644.40703 15421.52319 14830.50301 14895.98302 15477.48835 1.033849012 1.099441429 0.959741196 0.940946395 0.905059947 1.01078461 0.996384093 0.958198299 0.96242896 1 13.91788375 ASLLHSMPTHS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 ASLLHSMPTHSSPR 14 0 E3W994;J3KR49;O75122;A0A0U1RQI6;H7C4X8;E7ERI8;E7EW49;O75122-3 E3W994;E7ERI8 CLASP2 CLIP-associating protein 2 1 0 ASLLHSMPT(0.004)HS(0.498)S(0.498)PR 174.4 1.93E-07 17524000 1907.8 1388.3 1217.8 1397.6 2364.8 1666.4 1685 1602.6 1901.8 1770.4 TRUE FALSE FALSE 1684.170576 1431.071877 1283.637952 1454.600169 2190.353415 1634.616196 1749.991014 1785.033506 1823.406999 1759.869582 0.956986014 0.813169278 0.729393794 0.826538616 1.244611213 0.92882803 0.994386762 1.014298744 1.03610348 1 10.7812528 ASLQAMS(ph)LEEAKMHR ddPTM_HeLa_CUDC101_4h_R1 1 ASLQAMSLEEAKMHR 15 1 Q5TAP6 Q5TAP6 UTP14C U3 small nucleolar RNA-associated protein 14 homolog C 1 0 AS(0.002)LQAMS(0.998)LEEAKMHR 65.374 0.0030733 0 747.67 445.21 601.71 776.88 715.41 665.95 624.23 679.45 708.78 687.74 TRUE FALSE FALSE 660.029256 458.9263924 634.2402627 808.5645244 662.6356296 653.2481133 648.3067602 756.7958416 679.5637884 683.6492919 0.965450069 0.671289209 0.927727521 1.182718294 0.969262511 0.955531032 0.948303125 1.106994259 0.994023978 1 9.41711261 ASS(ph)HSS(ph)QTQGGGSVTK ddPTM_HeLa_CUDC101_4h_R1 2 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.2)S(0.798)HS(0.166)S(0.641)QT(0.195)QGGGSVTK;AS(0.003)S(0.997)HS(0.331)S(0.515)QT(0.154)QGGGSVTK ; 164.63 0.00027681 419635600 6260.6 2732.35 2746.32 3165.2 6504.3 5763.1 5632.9 3749.7 5403.6 4993.6 TRUE FALSE FALSE 5526.741958 2816.530465 2894.794366 3294.290537 6024.490747 5653.178469 5850.16284 4176.550691 5180.861321 4963.897845 1.113387529 0.567402987 0.583169609 0.663649946 1.213661307 1.138858745 1.17854215 0.841385303 1.043708288 1 12.27725771 ASS(ph)HSSQT(ph)QGGGSVTK ddPTM_HeLa_CUDC101_4h_R1 1 ASSHSSQTQGGGSVTK 16 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 2 0 AS(0.004)S(0.996)HS(0.228)S(0.177)QT(0.591)QGGGS(0.002)VT(0.001)K 160.43 2.76E-08 0 2704 1154.7 1252.8 1219.3 2957.5 2239.8 2501.7 1682.8 2318.8 2273.7 TRUE FALSE FALSE 2387.041219 1190.274938 1320.530158 1269.028324 2739.331117 2197.079547 2598.191407 1874.36315 2223.218083 2260.175931 1.056130714 0.526629331 0.584259897 0.561473249 1.211999066 0.972083419 1.149552728 0.829299668 0.983648242 1 11.14221936 ASS(ph)LEDLVLK ddPTM_HeLa_CUDC101_4h_R1 7 ASSLEDLVLK 10 0 Q15477 Q15477 SKIV2L Helicase SKI2W 1 0 AS(0.022)S(0.978)LEDLVLK;ASS(1)LEDLVLK;AS(0.132)S(0.868)LEDLVLK;ASS(1)LEDLVLK;AS(0.002)S(0.998)LEDLVLK;AS(0.031)S(0.969)LEDLVLK;AS(0.001)S(0.999)LEDLVLK ;;;;;; 206.36 7.89E-24 2452319600 36806.5 31507.2 27883.2 28915.9 31782 30684.6 29492.7 26598.3 28817.7 28906.9 TRUE FALSE FALSE 32492.09787 32477.89949 29390.65013 30095.21539 29437.50518 30099.34238 30630.24332 29626.14296 27629.82221 28734.96047 1.130751438 1.130257323 1.022818534 1.047337978 1.024449127 1.0474816 1.065957385 1.031013875 0.961540289 1 14.81051944 ASS(ph)PGYIDSPTYSR ddPTM_HeLa_CUDC101_4h_R1 4 ASSPGYIDSPTYSR 14 0 A0A0C4DGA7;O94929-2;O94929-3;O94929 A0A0C4DGA7 ABLIM3 Actin-binding LIM protein 3 1 0 AS(0.005)S(0.995)PGYIDSPTYSR;AS(0.005)S(0.995)PGYIDSPTYSR;AS(0.013)S(0.986)PGYIDS(0.001)PTYSR;AS(0.007)S(0.992)PGYIDSPTYSR ;;; 262.48 3.62E-70 141602000 10865.2 9403.4 8758.7 8446.8 10346.4 8649 8577.7 8733.6 8738.5 8806.4 TRUE FALSE FALSE 9591.597727 9693.107608 9232.221816 8791.297014 9583.166685 8484.034735 8908.544762 9727.797722 8378.295331 8754.019141 1.095679318 1.107275122 1.054626643 1.004258372 1.094716213 0.969158806 1.017651963 1.111237886 0.957079851 1 13.09572982 ASSCET(ph)YEYPQR ddPTM_HeLa_CUDC101_4h_R1 1 ASSCETYEYPQR 12 0 Q9UQC2-2;Q9UQC2 Q9UQC2-2 GAB2 GRB2-associated-binding protein 2 1 0 ASS(0.026)CET(0.974)YEYPQR 182.23 7.20E-10 8713800 1306.1 1055 1339 1033.8 1231.8 1206.3 1335.5 1863.9 1181 999.59 TRUE FALSE FALSE 1153.000938 1087.5033 1411.39039 1075.962832 1140.932568 1183.291837 1387.010682 2076.078842 1132.31868 993.6443942 1.160375829 1.094459251 1.420418007 1.082844968 1.148230267 1.190860477 1.39588236 2.089357977 1.139561282 1 9.956585822 ASSDGEGTMSRPASVDGSPVS(ph)PSTNR ddPTM_HeLa_CUDC101_4h_R1 1 ASSDGEGTMSRPASVDGSPVSPSTNR 26 1 P35568 P35568 IRS1 Insulin receptor substrate 1 1 0 ASSDGEGTMSRPASVDGSPVS(0.879)PS(0.06)T(0.06)NR 100.15 1.65E-06 11326000 1319.1 1175.1 1293.3 1130.9 1299.6 1213.3 1153.8 1440.9 1508.5 1104.6 TRUE FALSE FALSE 1164.477098 1211.303438 1363.21971 1177.02299 1203.731097 1190.158324 1198.302452 1604.926232 1446.318992 1098.02979 1.060515032 1.103160815 1.241514322 1.071940853 1.096264517 1.083903492 1.09132053 1.461641794 1.317194674 1 10.10070148 ASVS(ph)GPNS(ph)PSETRR ddPTM_HeLa_CUDC101_4h_R1 1 ASVSGPNSPSETRR 14 1 A0A087X0X0;C9J453;A0A087X255;O15344-2;O15344 A0A087X0X0 MID1 E3 ubiquitin-protein ligase Midline-1 2 0 AS(0.313)VS(0.678)GPNS(0.887)PS(0.103)ET(0.02)RR 130.47 0.0016232 36644000 3968.6 3559.5 3905.3 2911.5 3562.6 3440.4 2918.9 2924.3 3209.1 3520.8 TRUE FALSE FALSE 3503.406724 3669.163976 4116.432331 3030.243555 3299.794096 3374.780102 3031.482951 3257.190492 3076.81954 3499.858125 1.001013927 1.048375061 1.1761712 0.865818969 0.942836532 0.964261973 0.866173097 0.93066358 0.879126933 1 11.77308072 VQIVSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VQIVSKK 7 1 E7EVA0;P27816;P27816-6;P27816-2;P27816-4;H0Y2V1;F8W9U4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 0 1 ; VQIVSK(1)K;VQIVSK(1)K 141.39 0.0014379 10669300 7355 8295.4 8263.3 9290.2 10139.4 8873.3 9021.3 7784.1 5737.3 5237.1 FALSE TRUE FALSE 6492.858049 8550.971442 8710.038993 9669.094512 9391.436663 8704.056586 9369.254563 8670.21048 5500.806066 5205.949496 1.247199585 1.642538301 1.673093256 1.857316234 1.803981516 1.671944108 1.799720602 1.66544268 1.056638385 1 12.3459456 -7.355625159 1.179418621 1.074143832 1.765595027 0.941010456 0.073272693 0.07263056 0.197465422 0.017579376 0.020005576 4.41E-08 7.355625159 0.691451196 ATDDDMQSLASLMSVKPSDVGNLDDFAES(ph)DEDEAHGPGAPEAR ddPTM_HeLa_CUDC101_4h_R1 1 ATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEAHGPGAPEAR 43 1 Q8N3D4;E9PIH6;A0A0U1RQH4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 0 AT(0.002)DDDMQS(0.007)LAS(0.025)LMS(0.025)VKPS(0.27)DVGNLDDFAES(0.671)DEDEAHGPGAPEAR 43.437 0.0081272 4289500 388.36 301.33 407.78 236.34 270.78 359.82 319.29 192.62 313.81 322.28 TRUE FALSE FALSE 342.8370295 310.6136201 429.8258203 245.9789667 250.8050989 352.957033 331.6051223 214.5470822 300.874619 320.3630642 1.070151549 0.969567515 1.341683447 0.767813129 0.7828777 1.10174072 1.035091617 0.669699807 0.939167628 1 8.323564014 ATGAALT(ph)PTEER ddPTM_HeLa_CUDC101_4h_R1 2 ATGAALTPTEER 12 0 M0R0P8;Q13459-2;Q13459;M0R300 M0R0P8 MYO9B Unconventional myosin-IXb 1 0 ATGAALT(0.591)PT(0.409)EER;ATGAALT(0.674)PT(0.326)EER ; 118.24 0.017777 17701700 5345.1 4617.4 3608.5 4192.8 4499.7 4654.2 4120.3 3963.5 4058.1 4575.3 TRUE FALSE FALSE 4718.555481 4759.656621 3803.586425 4363.800507 4167.766096 4565.428889 4279.221351 4414.688819 3890.8234 4548.085912 1.037481607 1.046518626 0.836304876 0.959480668 0.916378049 1.003813248 0.940884019 0.970669619 0.855485907 1 12.15104379 ATGEPGTFVCTSHLPAAAS(ph)ASPK ddPTM_HeLa_CUDC101_4h_R1 3 ATGEPGTFVCTSHLPAAASASPK 23 0 Q8IY33-4;Q8IY33-2;Q8IY33 Q8IY33-4 MICALL2 MICAL-like protein 2 1 0 ATGEPGTFVCTSHLPAAAS(0.851)AS(0.149)PK;ATGEPGTFVCTSHLPAAAS(0.5)AS(0.5)PK;ATGEPGTFVCTS(0.002)HLPAAAS(0.841)AS(0.157)PK ;; 126.86 1.26E-07 101173000 9575.9 9098.9 8272 7376.5 8852.3 8010 7975.2 8334.1 9094.1 8133.4 TRUE FALSE FALSE 8453.427518 9379.226324 8719.209341 7677.345554 8199.283465 7857.222596 8282.806136 9282.820256 8719.237349 8085.022175 1.045566399 1.160074286 1.078439756 0.949576314 1.014132465 0.971824495 1.024463008 1.148150253 1.07844322 1 12.98103602 ATIS(ph)DEEIER ddPTM_HeLa_CUDC101_4h_R1 3 ATISDEEIER 10 0 C9J0A7;Q9UQN3-2;Q9UQN3 C9J0A7 CHMP2B Charged multivesicular body protein 2b 1 0 AT(0.492)IS(0.508)DEEIER;ATIS(1)DEEIER;AT(0.453)IS(0.547)DEEIER ;; 160.86 5.96E-05 499978000 3978.91 3519.74 3893.84 3406.49 3896.04 4084.3 3523.33 3386.91 3786.43 3785.86 TRUE FALSE FALSE 3512.508201 3628.179017 4104.352769 3545.421386 3608.636891 4006.398782 3659.226018 3772.462144 3630.351753 3763.341536 0.933348241 0.96408444 1.090613947 0.942093975 0.958891681 1.064585487 0.972334289 1.00242354 0.964661782 1 11.87779851 ATMAQNENVVVQPVVAENIPVIPLSDS(ph)PPPSR ddPTM_HeLa_CUDC101_4h_R1 1 ATMAQNENVVVQPVVAENIPVIPLSDSPPPSR 32 0 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 0 ATMAQNENVVVQPVVAENIPVIPLS(0.049)DS(0.476)PPPS(0.476)R 106.09 1.68E-11 7838700 1152.8 1080.6 740.03 814.72 1050.3 1010.5 931.15 954.69 1252.3 911.8 TRUE FALSE FALSE 1017.670532 1113.892005 780.0382603 847.9478031 972.8214615 991.2263961 967.0647674 1063.368051 1200.679664 906.376573 1.122789977 1.228950569 0.860611675 0.935535878 1.073308259 1.093614316 1.066956932 1.173207784 1.324702888 1 9.823966762 AVFVDLEPTVIDEVRTGT(ph)YR ddPTM_HeLa_CUDC101_4h_R1 1 AVFVDLEPTVIDEVRTGTYR 20 1 Q9BQE3;F5H5D3;A0A1W2PQM2;F8VVB9;F8VQQ4;F8VS66;F8VRZ4;F8VX09;F8VWV9;F8VRK0;P68363;P68363-2;Q71U36-2;Q71U36 Q9BQE3;P68363 TUBA1C;TUBA1B;TUBA1A Tubulin alpha-1C chain;Tubulin alpha-1B chain;Tubulin alpha-1A chain 1 0 AVFVDLEPTVIDEVRT(0.374)GT(0.609)Y(0.017)R 104.3 0.00042151 5356700 1431.8 1208.9 1447.7 1110.6 1639.1 1416.9 1428.2 1049.5 1017.2 1466.8 TRUE FALSE FALSE 1263.966574 1246.144776 1525.967041 1155.895068 1518.186859 1389.874993 1483.286152 1168.970838 975.2705855 1458.075408 0.866873254 0.854650431 1.046562498 0.79275397 1.041226572 0.953225728 1.017290425 0.801721798 0.668875272 1 10.50984962 AVLFCLS(ph)EDKK ddPTM_HeLa_CUDC101_4h_R1 2 AVLFCLSEDKK 11 1 P23528;G3V1A4;E9PP50;E9PK25;E9PQB7;E9PLJ3;E9PS23 P23528 CFL1 Cofilin-1 1 0 AVLFCLS(1)EDKK;AVLFCLS(1)EDKK ; 101.39 0.022053 46028000 5400.8 4205.3 3790.3 4104 5520.4 5022.7 4165 3619.2 5480.9 3990.6 TRUE FALSE FALSE 4767.726411 4334.860308 3995.215083 4271.378859 5113.17109 4926.900366 4325.645445 4031.195099 5254.974982 3966.863734 1.201888124 1.092767637 1.007147044 1.076764705 1.288970692 1.242014018 1.090444678 1.016217185 1.324717796 1 11.95378312 AYT(ph)HQVVTR ddPTM_HeLa_CUDC101_4h_R1 1 AYTHQVVTR 9 0 D6REC6;D6R9G1;D6RAD4;P50613 D6REC6 CDK7 Cyclin-dependent kinase 7 1 0 AYT(1)HQVVTR 96.604 0.029502 80094000 6035.3 7576.9 9127 7033.9 5910.2 6371.5 7235.1 7425.3 8560.2 7786.1 TRUE FALSE FALSE 5327.851283 7810.335308 9620.433228 7320.772845 5474.216321 6249.974253 7514.160231 8270.566138 8207.344933 7739.787931 0.68837174 1.009114898 1.242984086 0.945862201 0.707282469 0.807512339 0.970848336 1.068577875 1.060409537 1 12.91807832 AYT(ph)PPPPLGPHPNLGK ddPTM_HeLa_CUDC101_4h_R1 3 AYTPPPPLGPHPNLGK 16 0 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 0 AYT(1)PPPPLGPHPNLGK;AY(0.007)T(0.993)PPPPLGPHPNLGK;AYT(1)PPPPLGPHPNLGK ;; 99.891 0.006231 203694000 9392 8107.1 8307.7 7962 9159.7 8762.2 8238.2 7493.5 8613.8 8477.5 TRUE FALSE FALSE 8291.083997 8356.870142 8756.839391 8286.724775 8484.00718 8595.075634 8555.950134 8346.52975 8258.735518 8427.075453 0.983862556 0.991669078 1.03913148 0.983345269 1.006755811 1.019935763 1.015292931 0.990442034 0.98002392 1 13.04081633 AYT(ph)PVVVTQWYR ddPTM_HeLa_CUDC101_4h_R1 1 AYTPVVVTQWYR 12 0 Q5QPR4;Q5QPR3;Q9UQ88-4;Q9UQ88-3;Q9UQ88-2;Q9UQ88;Q9UQ88-5;Q9UQ88-10 Q5QPR4 CDK11A Cyclin-dependent kinase 11A 1 0 AYT(0.998)PVVVT(0.002)QWYR 118.76 0.017324 63088000 2124.4 1473.7 1018.2 1407.7 1635.8 1355.7 1533.7 1048.9 1189.9 1093.7 TRUE FALSE FALSE 1875.381052 1519.10295 1073.246972 1465.112091 1515.130293 1329.842281 1592.855323 1168.302536 1140.851818 1087.194624 1.724972706 1.397268637 0.987170971 1.347607925 1.393614593 1.223186955 1.46510596 1.074602937 1.049353808 1 10.08639451 DAPTSPASVASSSST(ph)PSSK ddPTM_HeLa_CUDC101_4h_R1 1 DAPTSPASVASSSSTPSSK 19 0 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 DAPTS(0.003)PAS(0.005)VAS(0.009)S(0.085)S(0.043)S(0.202)T(0.506)PS(0.125)S(0.022)K 165.9 1.50E-12 0 1948.3 1216.9 1694.9 1394.3 1467.8 1871.8 1745.4 1536.9 1613.9 1674.9 TRUE FALSE FALSE 1719.923227 1254.391247 1786.531421 1451.165581 1359.523318 1836.098534 1812.720663 1711.854484 1547.374359 1664.93762 1.033025626 0.753416363 1.073032046 0.871603574 0.816561114 1.102803199 1.088761909 1.028179352 0.929388789 1 10.70125241 DAS(ph)PTPSTDAEYPANGSGADR ddPTM_HeLa_CUDC101_4h_R1 2 DASPTPSTDAEYPANGSGADR 21 0 E9PEE2;E7EPF5;O43639 E9PEE2 NCK2 Cytoplasmic protein NCK2 1 0 DAS(0.84)PT(0.16)PSTDAEYPANGSGADR;DAS(0.995)PT(0.005)PSTDAEYPANGSGADR ; 277.07 8.32E-89 27830000 2033.11 2108.93 1918.29 2107.19 2310.42 2064.81 1899.5 2023.15 2237.13 2278.41 TRUE FALSE FALSE 1794.791928 2173.903634 2021.99856 2193.130316 2139.98492 2025.427189 1972.764351 2253.457218 2144.914555 2264.857916 0.792452328 0.959841065 0.8927706 0.968330199 0.944864976 0.894284438 0.871032279 0.994966264 0.947041551 1 11.14520483 DDSLDLS(ph)PQGR ddPTM_HeLa_CUDC101_4h_R1 2 DDSLDLSPQGR 11 0 Q14669;Q14669-2;Q14669-3;Q14669-4 Q14669 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 0 DDS(0.011)LDLS(0.989)PQGR;DDS(0.004)LDLS(0.996)PQGR ; 127.52 0.0026159 15760900 5270.1 4710.1 4034.4 4275.8 6025 5154.9 4846.6 3102.5 5407.8 4282 TRUE FALSE FALSE 4652.346867 4855.212598 4252.511867 4450.185606 5580.547753 5056.578871 5033.534985 3455.676059 5184.888195 4256.530474 1.092990382 1.140650262 0.999055896 1.045496005 1.311055515 1.187957869 1.182544097 0.811852771 1.218101979 1 12.05546224 DEALQNIS(ph)ADDLPDSASQAAHPQDSAFSYR ddPTM_HeLa_CUDC101_4h_R1 2 DEALQNISADDLPDSASQAAHPQDSAFSYR 30 0 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 DEALQNIS(0.995)ADDLPDS(0.004)AS(0.001)QAAHPQDSAFSYR;DEALQNIS(0.936)ADDLPDS(0.053)AS(0.011)QAAHPQDSAFSYR ; 112.36 6.85E-11 26111300 2106.41 1204.99 1268.12 964.39 1689.5 1337.41 1416.96 1395.7 1553.01 1202.16 TRUE FALSE FALSE 1859.499813 1242.114314 1336.678403 1003.721993 1564.868951 1311.901133 1471.612622 1554.580846 1488.99427 1195.009499 1.55605442 1.039417942 1.118550442 0.839928045 1.309503357 1.097816489 1.231465209 1.300894133 1.246010406 1 10.22280637 DFQDY(ph)MEPEEGCQGSPQR ddPTM_HeLa_CUDC101_4h_R1 1 DFQDYMEPEEGCQGSPQR 18 0 O43237;O43237-2;B4E2E0;H3BUM4 O43237 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 0 DFQDY(0.701)MEPEEGCQGS(0.299)PQR 96.82 0.017995 5796100 2072.3 2040 1482.4 1679.7 1778.1 2057.5 1521.7 1444.7 1821.2 1825.7 TRUE FALSE FALSE 1829.388135 2102.849982 1562.543028 1748.205426 1646.933105 2018.256616 1580.392479 1609.158808 1746.129365 1814.840655 1.008015844 1.158696757 0.860980838 0.963283152 0.907480831 1.11208475 0.87081611 0.886666718 0.962139216 1 10.82562717 DGAPVAT(ph)NAFHSPR ddPTM_HeLa_CUDC101_4h_R1 1 DGAPVATNAFHSPR 14 0 Q96S52-2;Q96S52 Q96S52-2 PIGS GPI transamidase component PIG-S 1 0 DGAPVAT(0.751)NAFHS(0.249)PR 90.259 0.020454 518760000 2557.5 2386.3 2106.5 2113.2 2397.8 2189.2 2038.5 2510.9 2483.4 2396 TRUE FALSE FALSE 2257.713727 2459.819075 2220.383762 2199.38543 2220.919071 2147.444657 2117.125628 2796.730707 2381.033201 2381.748485 0.947922814 1.032778687 0.932249469 0.923433118 0.932474224 0.901625285 0.888895549 1.174234275 0.999699681 1 11.21780536 VQVEYK(ac)GETK ddPTM_HeLa_CUDC101_4h_R1 2 VQVEYKGETK 10 1 P11142;E9PKE3;P11142-2;E9PN89;E9PLF4;E9PQQ4;E9PQK7;E9PK54;E9PPY6;E9PN25;P54652 P11142;P54652 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 1 ; VQVEYK(1)GETK;VQVEYK(1)GETK 173.71 0.00047055 4277700 4133.9 2526.44 1744.87 2058.95 4567 3657.1 3893.7 3875.3 3084.62 1853.57 FALSE TRUE FALSE 3649.330509 2604.276622 1839.20295 2142.922881 4230.101509 3587.346911 4043.881313 4316.448487 2957.470658 1842.544883 1.980592463 1.413412854 0.998186241 1.163023436 2.295792926 1.946952252 2.194726082 2.342655816 1.605101013 1 10.84748405 -1 0.057384368 6.88E-10 5.333841837 0.354363474 0.402890266 296.3328513 1.287283426 25.67666118 134.6196074 0.1 1 5.333841837 VREEEIEVDSR ddPTM_HeLa_CUDC101_4h_R1 4 VREEEIEVDSR 11 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 0 ;;; ;;; 160.86 0.00014209 126920000 20031.6 18782.7 18373.4 16907.7 18886.7 17531.6 17424.8 16653.8 19421.9 18697.4 FALSE FALSE TRUE 17683.52621 19361.37272 19366.72158 17597.26909 17493.46577 17197.21394 18096.88037 18549.60128 18621.32106 18586.18703 0.951433782 1.041707623 1.04199541 0.946792855 0.941207884 0.925268529 0.973673639 0.998031562 1.00189033 1 14.18194321 VREEGDEEGEGDEAEDEEQRGPELK ddPTM_HeLa_CUDC101_4h_R1 1 VREEGDEEGEGDEAEDEEQRGPELK 25 2 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 0 94.176 4.35E-06 7629500 1447.7 1281.3 1067.8 1016 1521.9 1403.6 1416.2 1227.2 1751.2 1429.6 FALSE FALSE TRUE 1278.002801 1320.775334 1125.528498 1057.436872 1409.632469 1376.828669 1470.823308 1366.899487 1679.014795 1421.096676 0.899307431 0.929405689 0.792014025 0.74409918 0.991932845 0.968849405 1.034991731 0.96186242 1.181492311 1 10.47278899 -5.608521794 24.11907105 0.920831127 0.991279111 0.073988848 0.112186266 29.67429631 8350.737871 0.013240118 0.026480236 2.46E-06 5.608521794 0.070447984 VREEYPDR ddPTM_HeLa_CUDC101_4h_R1 4 VREEYPDR 8 1 A0A0B4J269;Q13509;Q13509-2;G3V2A3 A0A0B4J269 TUBB3 Tubulin beta-3 chain 0 0 ;;; ;;; 123.21 0.0085282 36706900 12191.7 10827.1 10255.1 11370.7 10833.2 10197.9 8724 8485.6 9290.2 9019.5 FALSE FALSE TRUE 10762.60741 11160.67012 10809.52173 11834.44629 10034.05642 10003.39205 9060.487602 9451.566404 8907.254024 8965.851613 1.200399903 1.24479755 1.205632459 1.319946705 1.119141477 1.115721348 1.010555159 1.05417386 0.993464359 1 13.13022491 -3.054456191 10.71578707 1.122389041 0.67273715 0 0.107630766 0 0 0.015914041 0 0.000882153 3.054456191 -0.449651891 VRELELELDR ddPTM_HeLa_CUDC101_4h_R1 2 VRELELELDR 10 1 O94992 O94992 HEXIM1 Protein HEXIM1 0 0 ; ; 108.31 0.0010334 5594600 5657.5 6217.1 5407.5 6353.8 9425.1 8631 8023.8 6044.2 7861.6 7004.5 FALSE FALSE TRUE 4994.336426 6408.641482 5699.845807 6612.935427 8729.82915 8466.378055 8333.280654 6732.247297 7537.54152 6962.836922 0.717284705 0.920406661 0.818609695 0.94974728 1.253774754 1.215938008 1.196822609 0.966882805 1.082538857 1 12.76545952 -5.912153359 4.94753472 0.865397446 1.163760437 0.48256338 0.119910867 0.118203293 5.008659237 0.018577158 0.034207221 1.22E-06 5.912153359 0.298362991 VRGEVAPDAK ddPTM_HeLa_CUDC101_4h_R1 2 VRGEVAPDAK 10 1 P09382;F8WEI7 P09382 LGALS1 Galectin-1 0 0 ; ; 105.2 0.013195 60550000 17544.2 11778.1 18590.5 19339.2 16789.3 14586.4 16098.9 11319.2 18438.2 16417.3 FALSE FALSE TRUE 15487.69547 12140.9693 19595.55866 20127.93617 15550.78679 14308.18872 16719.83997 12607.73197 17678.16959 16319.64917 0.949021349 0.743947935 1.200734064 1.233355935 0.952887322 0.876746098 1.024522022 0.772549204 1.083244462 1 13.99432242 -4.254719123 23.25666304 0.986443931 0.772548933 0.192781427 0.138294713 392.2027014 1357185.689 0.018496554 0.230589222 5.56E-05 4.254719123 -0.213894998 DIDHETVVEEQIIGENS(ph)PPDYSEYMTGK ddPTM_HeLa_CUDC101_4h_R1 5 DIDHETVVEEQIIGENSPPDYSEYMTGK 28 0 A0A494C032;H0YJU4;H0YJV7;P25490 A0A494C032 YY1 Transcriptional repressor protein YY1 1 0 DIDHETVVEEQIIGENS(0.997)PPDY(0.002)S(0.001)EYMTGK;DIDHETVVEEQIIGENS(1)PPDYSEYMTGK;DIDHETVVEEQIIGENS(0.998)PPDY(0.002)SEYMTGK;DIDHETVVEEQIIGENS(0.622)PPDY(0.247)S(0.099)EY(0.029)MT(0.004)GK;DIDHETVVEEQIIGENS(0.987)PPDY(0.01)S(0.003)EYMTGK ;;;; 165.53 4.37E-17 81130000 7574.18 4439.98 5138.83 5161.64 6537.13 6795.87 5945.96 5558.61 6144.96 6691.27 TRUE FALSE FALSE 6686.346102 4576.770521 5416.650694 5372.15399 6054.898944 6666.250102 6175.297669 6191.379694 5891.662148 6651.470028 1.005243363 0.688084063 0.81435392 0.807664165 0.910309889 1.002222076 0.928410959 0.930828774 0.885768428 1 12.69945751 DLDRPESQS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 DLDRPESQSPK 11 1 Q8WUA4;A0A087WZD8;Q8WUA4-2 Q8WUA4 GTF3C2 General transcription factor 3C polypeptide 2 1 0 DLDRPES(0.009)QS(0.991)PK;DLDRPES(0.003)QS(0.997)PK ; 139.86 0.0071022 163981000 6638.6 5572.1 6691.5 6519 6053.2 6036.1 6085.2 5644.9 6871.1 6489.9 TRUE FALSE FALSE 5860.433371 5743.769796 7053.262731 6784.872998 5606.667496 5920.971449 6319.908202 6287.492599 6587.87035 6451.297786 0.908411542 0.890327805 1.093309124 1.051706683 0.86907591 0.917795403 0.97963362 0.974608956 1.021169781 1 12.6553737 DLEASSEPEPTPGAAKPET(ph)PQAPPLLPR ddPTM_HeLa_CUDC101_4h_R1 1 DLEASSEPEPTPGAAKPETPQAPPLLPR 28 1 A0A1W2PR85;O15056-2;O15056;E7ER60;O15056-3 A0A1W2PR85 SYNJ2 Synaptojanin-2 1 0 DLEASS(0.001)EPEPT(0.093)PGAAKPET(0.907)PQAPPLLPR 59.674 0.0031266 8789900 560.05 256.87 359.99 294.55 332.25 419.6 316.16 223.91 286.3 197.1 TRUE FALSE FALSE 494.401788 264.7838602 379.4521483 306.5630222 307.7405794 411.5968291 328.3543971 249.3990093 274.4985928 195.9276404 2.523389691 1.351436988 1.936695341 1.564674701 1.570684865 2.100759383 1.675896246 1.272913861 1.401020255 1 7.61417713 DLGHPVEEEDELES(ph)GDQEDEDDESEDPGKDLDHI ddPTM_HeLa_CUDC101_4h_R1 1 DLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 34 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 1 0 DLGHPVEEEDELES(0.956)GDQEDEDDES(0.044)EDPGKDLDHI 42.468 0.018016 50108000 1389.8 1296.4 986.38 1408.2 1435.6 1404.6 1247.1 1157.7 1189.6 1370.6 TRUE FALSE FALSE 1226.889751 1336.340547 1039.706686 1465.632483 1329.698648 1377.809595 1295.201065 1289.487888 1140.564184 1362.44761 0.900504167 0.980838116 0.763116819 1.075734929 0.97596314 1.011275285 0.950642839 0.946449521 0.837143517 1 10.41198504 VRMADNEVMDAFR ddPTM_HeLa_CUDC101_4h_R1 2 VRMADNEVMDAFR 13 1 O75528 O75528 TADA3 Transcriptional adapter 3 0 0 ; ; 82.774 0.033126 115229000 7398.1 6594.1 6260.2 5706.2 7517.3 6762.2 6575.3 6876.9 7252 6966.3 FALSE FALSE TRUE 6530.905933 6797.256405 6598.645348 5938.9235 6962.763756 6633.222302 6828.911524 7659.738499 6953.069491 6924.864138 0.943109612 0.981572529 0.952891669 0.857623107 1.005472976 0.957884829 0.986143755 1.106121123 1.004073055 1 12.75757005 -4.257694969 3.067925049 0.965027679 1.129027577 0.519444266 0.041089652 0.236730523 3.287766232 0.005736092 0.094288954 5.52E-05 4.257694969 0.163999898 DLKPENILCES(ph)PEK ddPTM_HeLa_CUDC101_4h_R1 2 DLKPENILCESPEK 14 1 Q7Z319;A0A499FJS1;A0A499FJN1;A0A499FIS5;Q9BUB5-3;Q9BUB5-2;Q9BUB5 Q7Z319 DKFZp686E14208;MKNK1 MAP kinase-interacting serine/threonine-protein kinase 1 1 0 DLKPENILCES(1)PEK;DLKPENILCES(1)PEK ; 78.674 0.016136 10590400 4486.4 4155 3988.5 3660.3 3720.6 2898.2 3154.6 2961.6 4123.5 2459 TRUE FALSE FALSE 3960.510993 4283.010625 4204.130375 3809.582855 3446.13875 2842.921664 3276.273979 3298.736573 3953.527585 2444.373759 1.620255895 1.752191378 1.719921252 1.558510781 1.409824802 1.16304704 1.340332659 1.349522167 1.617398964 1 11.25524918 DLLEEEEAWEASHKNDLQDT(ph)EISPR ddPTM_HeLa_CUDC101_4h_R1 1 DLLEEEEAWEASHKNDLQDTEISPR 25 1 Q9NS91 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 0 DLLEEEEAWEAS(0.018)HKNDLQDT(0.621)EIS(0.362)PR 66.732 0.00091693 7529400 1553.2 1264.1 712.36 1076.6 1365 1076.6 1010 931.3 1282.5 1104.1 TRUE FALSE FALSE 1371.13625 1303.045423 750.8723364 1120.508401 1264.306669 1056.065649 1048.956038 1037.315428 1229.634807 1097.532764 1.249289584 1.18724968 0.684145714 1.020933897 1.151953464 0.962217879 0.955740068 0.945133905 1.120362733 1 10.10004829 DLLPSGSRDEPPPASQSTSQDCSQALKQS(ph)P ddPTM_HeLa_CUDC101_4h_R1 1 DLLPSGSRDEPPPASQSTSQDCSQALKQSP 30 2 Q5JRA6-4;Q5JRA6-2;Q5JRA6 Q5JRA6-4 MIA3 Melanoma inhibitory activity protein 3 1 0 DLLPSGSRDEPPPASQST(0.002)S(0.001)QDCS(0.001)QALKQS(0.997)P 96.77 5.26E-09 12833000 1557.8 1348.3 848.14 1239.5 1273.5 1147.4 1122.2 1088.4 1295.8 1250.3 TRUE FALSE FALSE 1375.197045 1389.839525 893.9930139 1290.052168 1179.556442 1125.515257 1165.48363 1212.299057 1242.386576 1242.86316 1.106475025 1.118256273 0.719301241 1.037967983 0.949063807 0.905582604 0.937740909 0.975408312 0.999616543 1 10.27945175 DMES(ph)PTKLDVTLAK ddPTM_HeLa_CUDC101_4h_R1 3 DMESPTKLDVTLAK 14 1 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;H7C456 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 DMES(0.829)PT(0.171)KLDVTLAK;DMES(0.985)PT(0.015)KLDVTLAK;DMES(0.981)PT(0.019)KLDVTLAK ;; 207.85 6.32E-23 3783960000 11557.7 10143.4 9630.4 8852 11184.7 10032.4 9825.2 10905.5 10688.3 9275.7 TRUE FALSE FALSE 10202.92393 10455.90613 10151.04855 9213.022822 10359.62696 9841.048685 10204.16126 12146.93804 10247.72375 9220.527724 1.106544466 1.133981313 1.100918392 0.999186066 1.123539484 1.067297771 1.106678659 1.317379916 1.111403171 1 13.17063361 DMQGLS(ph)LDAASQPSK ddPTM_HeLa_CUDC101_4h_R1 2 DMQGLSLDAASQPSK 15 0 E9PLL0;M0QZK6;E9PLZ8;E9PQA6;Q96EY5-3;Q96EY5 E9PLL0 MVB12A Multivesicular body subunit 12A 1 0 DMQGLS(0.969)LDAAS(0.031)QPSK;DMQGLS(0.608)LDAAS(0.392)QPSK ; 187.56 6.24E-11 20914000 3398.6 2375.6 2083.17 2262.6 3154.6 3163.4 2750.8 2402.32 2558.64 2523.6 TRUE FALSE FALSE 3000.22126 2448.78942 2195.792471 2354.878608 2921.891443 3103.063416 2856.899277 2675.790398 2453.171776 2508.589515 1.195979351 0.976161865 0.875309595 0.938726162 1.164754706 1.236975359 1.138846854 1.066651352 0.977908806 1 11.2926607 DRQS(ph)PLHGNHITISHTQATGSR ddPTM_HeLa_CUDC101_4h_R1 2 DRQSPLHGNHITISHTQATGSR 22 1 Q86VQ1;H7C2L5 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 0 DRQS(0.999)PLHGNHIT(0.001)ISHTQATGSR;DRQS(1)PLHGNHITISHTQATGSR ; 97.256 7.55E-05 21895000 2229.8 1159.63 1350.57 1048.13 2339.2 1663.74 1798.4 1642.6 2501.6 1597.98 TRUE FALSE FALSE 1968.426224 1195.356826 1423.585899 1090.877272 2166.641876 1632.006931 1867.76489 1829.586944 2398.482989 1588.475144 1.239192336 0.752518433 0.896196522 0.686744943 1.363975939 1.027404765 1.175822548 1.151788211 1.509927932 1 10.6334268 DRS(ph)ATVS(ph)S(ph)S(ph)VPMPAGGK ddPTM_HeLa_CUDC101_4h_R1 1 DRSATVSSSVPMPAGGK 17 1 A0A0U1RRL8;Q8TB22-4;Q8TB22;Q8TB22-2 A0A0U1RRL8 SPATA20 Spermatogenesis-associated protein 20 4 0 DRS(0.99)AT(0.01)VS(1)S(1)S(1)VPMPAGGK 71.286 0.012465 8519900 0 135.04 63.682 0 63.488 0 0 0 61.908 0 TRUE FALSE FALSE 0 139.2004223 67.12484155 0 58.80461673 0 0 0 59.35612604 0 0 VRVELSNGEK ddPTM_HeLa_CUDC101_4h_R1 1 VRVELSNGEK 10 1 P84103;P84103-2 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 0 117.09 0.0104 2489100 1562.5 1287 1267.3 1506.3 1412.2 1627.5 1583.5 1435.8 1786.1 1022.2 FALSE FALSE TRUE 1379.346119 1326.650945 1335.814071 1567.733425 1308.024819 1596.458149 1644.576125 1599.245668 1712.476202 1016.119909 1.357463924 1.305604715 1.314622477 1.54286262 1.287274079 1.57113165 1.618486274 1.573874947 1.685309172 1 9.988854944 -10.78783462 0.088289558 1.19E-13 1.983972877 0 0.226022422 20.03102268 0.26117009 5.497857754 1.444225767 1.63E-11 10.78783462 1.983972877 DSEGDSLGARPGLPYGLS(ph)DDESGGGR ddPTM_HeLa_CUDC101_4h_R1 2 DSEGDSLGARPGLPYGLSDDESGGGR 26 1 Q8N8E2;Q8N8E2-2;C9JT52 Q8N8E2 ZNF513 Zinc finger protein 513 1 0 DS(0.001)EGDS(0.003)LGARPGLPY(0.013)GLS(0.95)DDES(0.032)GGGR;DS(0.003)EGDS(0.004)LGARPGLPY(0.006)GLS(0.911)DDES(0.076)GGGR ; 65.495 0.0010257 13071300 1247.74 1083.56 1037.01 1458.77 1357.44 1127.01 1053.12 1391.85 1443.3 1382.79 TRUE FALSE FALSE 1101.481809 1116.943199 1093.073897 1518.264946 1257.304356 1105.514162 1093.739191 1550.292578 1383.806563 1374.565104 0.801331131 0.812579336 0.795214351 1.104542042 0.914692474 0.804264679 0.795698355 1.127842235 1.006723188 1 10.42475952 VRVELSTGMPR ddPTM_HeLa_CUDC101_4h_R1 2 VRVELSTGMPR 11 1 A0A0B4J1Z1;C9JAB2;Q16629-3;Q16629-2;Q16629-4;Q16629 A0A0B4J1Z1 SRSF7 Serine/arginine-rich splicing factor 7 0 0 ; ; 144.7 0.0004094 5099100 1577.53 1090.13 1057.71 1177.68 1628.38 1498.56 1274.47 1147.31 986.49 615.08 FALSE FALSE TRUE 1392.614325 1123.715613 1114.893002 1225.710881 1508.257652 1469.977465 1323.626735 1277.915133 945.8264647 611.4214768 2.277666679 1.837873964 1.823444292 2.004690589 2.466805156 2.404196648 2.1648352 2.090072366 1.546930392 1 9.256023419 -9.701958344 0.504100262 0.537578975 2.182311082 0.59677673 0.265008998 0.759268637 0.200398165 0.657851108 0.056492546 1.99E-10 9.701958344 1.644732107 DSISAVSSEKVS(ph)PSKSPSLSPSPPS(ph)PLEK ddPTM_HeLa_CUDC101_4h_R1 1 DSISAVSSEKVSPSKSPSLSPSPPSPLEK 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 0 DS(0.001)IS(0.005)AVS(0.032)S(0.035)EKVS(0.754)PS(0.142)KS(0.041)PS(0.043)LS(0.141)PS(0.079)PPS(0.727)PLEK 57.565 0.0013773 76896000 2961.1 2579.2 2462.5 2827.4 2713.5 2922.5 2778.1 3419.6 2829.2 2660 TRUE FALSE FALSE 2614.004347 2658.662095 2595.630199 2942.713593 2513.330511 2866.758182 2885.252248 3808.873442 2712.579179 2644.178202 0.98858857 1.005477654 0.981639663 1.112902902 0.950514799 1.084177375 1.091171633 1.44047532 1.02586852 1 11.36860369 DSISAVSSEKVS(ph)PSKSPSLSPSPPSPLEK ddPTM_HeLa_CUDC101_4h_R1 1 DSISAVSSEKVSPSKSPSLSPSPPSPLEK 29 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 DS(0.001)IS(0.004)AVS(0.011)S(0.011)EKVS(0.681)PS(0.251)KS(0.026)PS(0.01)LS(0.004)PS(0.001)PPSPLEK 79.373 4.54E-06 57603000 2438.7 2490.9 2269.8 2255.4 2603.1 1940.1 1981.1 2563.4 2371.4 2568.7 TRUE FALSE FALSE 2152.839283 2567.641677 2392.512254 2347.384961 2411.074499 1903.095825 2057.511691 2855.207094 2273.649888 2553.421258 0.843119511 1.005569163 0.936982978 0.919309712 0.944252536 0.745312125 0.805786231 1.118188816 0.89043274 1 11.31821585 DTPRPDHPPHDGHSPAS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 DTPRPDHPPHDGHSPASR 18 1 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 0 DTPRPDHPPHDGHS(0.431)PAS(0.569)R 71.527 0.0081169 6014200 1400.5 1061 1408.6 1399.6 1574.4 1441.3 1298.2 1082.3 1254.8 1386.4 TRUE FALSE FALSE 1236.335513 1093.688152 1484.753177 1456.681738 1458.259649 1413.809604 1348.272009 1205.504657 1203.076613 1378.153631 0.897095567 0.793589428 1.077349537 1.056980662 1.058125608 1.025872277 0.978317641 0.874724436 0.872962626 1 10.42852101 DTSPDKGELVS(ph)DEEEDT ddPTM_HeLa_CUDC101_4h_R1 1 DTSPDKGELVSDEEEDT 17 1 Q9UPU7 Q9UPU7 TBC1D2B TBC1 domain family member 2B 1 0 DTSPDKGELVS(0.5)DEEEDT(0.5) 113.67 0.0037161 72339000 7238.1 5815.5 6157.2 5709.2 6762.6 6803.7 6274.9 6893.5 6774.3 6298.9 TRUE FALSE FALSE 6389.66089 5994.668662 6490.076857 5942.045853 6263.736471 6673.930758 6516.924995 7678.228176 6495.060487 6261.433863 1.02047886 0.957395509 1.036516076 0.948991235 1.000367745 1.065878983 1.040803934 1.226273142 1.037312001 1 12.61227736 DTSSS(ph)PTTGSTVQSVDLIFTR ddPTM_HeLa_CUDC101_4h_R1 1 DTSSSPTTGSTVQSVDLIFTR 21 0 P57060 P57060 RWDD2B RWD domain-containing protein 2B 1 0 DTS(0.005)S(0.044)S(0.949)PT(0.001)TGSTVQSVDLIFTR 203.11 2.90E-19 19741000 1555.5 1444.5 1603.5 1330.2 1890.7 1755.5 1623.3 1543.1 2194.9 1913.9 TRUE FALSE FALSE 1373.166648 1489.003333 1690.19006 1384.451306 1751.226828 1722.016762 1685.911225 1718.760267 2104.425293 1902.516038 0.721763507 0.782649556 0.888397273 0.727694946 0.920479404 0.905126016 0.886148233 0.903414338 1.106127492 1 10.8936929 DVDDGS(ph)GS(ph)PHSPHQLSSK ddPTM_HeLa_CUDC101_4h_R1 1 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 2 0 DVDDGS(0.754)GS(0.86)PHS(0.384)PHQLS(0.001)S(0.001)K 55.589 0.03174 9666200 4602.8 3577.4 2855.3 2827.9 4928.3 4528.3 4240.4 3902.9 4581 4543 TRUE FALSE FALSE 4063.266761 3687.615454 3009.666155 2943.233985 4564.749128 4441.930222 4403.953648 4347.19036 4392.169241 4515.978034 0.899753438 0.816570724 0.66644836 0.651737888 1.010799675 0.983603151 0.975193771 0.962624337 0.972584279 1 12.14082275 DVDDGS(ph)GSPHS(ph)PHQLSSK ddPTM_HeLa_CUDC101_4h_R1 1 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 2 0 DVDDGS(0.656)GS(0.344)PHS(0.999)PHQLSSK 85.884 0.021775 33620000 1871.3 1678.1 1317.1 1335.1 2296 2085.1 2206.6 1563.1 2290.3 2040.4 TRUE FALSE FALSE 1651.949051 1729.800272 1388.30641 1389.551149 2126.628654 2045.330192 2291.709301 1741.036986 2195.892865 2028.26361 0.814464669 0.852847856 0.684480263 0.68509396 1.04849717 1.00841438 1.129887304 0.858387922 1.082646681 1 10.98602945 DVHGEQET(ph)EGRSSPGPDTLVVLEFNPASK ddPTM_HeLa_CUDC101_4h_R1 1 DVHGEQETEGRSSPGPDTLVVLEFNPASK 29 1 O60303 O60303 KIAA0556 Uncharacterized protein KIAA0556 1 0 DVHGEQET(0.332)EGRS(0.332)S(0.332)PGPDT(0.004)LVVLEFNPASK 52.393 0.0091152 6877100 1708.5 1928.1 1902.5 1639.6 2569.4 1663.9 1920.9 1832.1 2048.1 2164.5 TRUE FALSE FALSE 1508.23222 1987.502476 2005.354905 1706.469975 2379.860481 1632.16388 1994.989756 2040.658858 1963.676451 2151.625458 0.700973403 0.923721398 0.93201858 0.793107355 1.106075629 0.758572489 0.927201223 0.948426619 0.912647898 1 11.07121125 DY(ph)QLVT(ph)WSRDQTLRMWR ddPTM_HeLa_CUDC101_4h_R1 1 DYQLVTWSRDQTLRMWR 17 2 Q6PJI9;Q6PJI9-2;B7Z7V6 Q6PJI9 WDR59 WD repeat-containing protein 59 2 0 DY(0.916)QLVT(0.991)WS(0.093)RDQTLRMWR 59.983 0.021718 11583000 1389.2 1449.2 1530.8 1522.6 1082.2 1344.7 1377.6 1356.3 1236.6 1621.1 TRUE FALSE FALSE 1226.360082 1493.848134 1613.559678 1584.698209 1002.368262 1319.052088 1430.734493 1510.69571 1185.626825 1611.457625 0.761025337 0.927016703 1.001304442 0.983394279 0.622025827 0.818545935 0.887851142 0.93747157 0.735748062 1 10.65415054 EADQPTTEPGMVLDSVEAGDTT(ph)PPTK ddPTM_HeLa_CUDC101_4h_R1 2 EADQPTTEPGMVLDSVEAGDTTPPTK 26 0 A0A0J9YVR0;A0A0J9YWV8 A0A0J9YVR0 1 0 EADQPTTEPGMVLDSVEAGDT(0.246)T(0.662)PPT(0.092)K;EADQPTTEPGMVLDSVEAGDT(0.107)T(0.786)PPT(0.107)K ; 135.6 7.54E-11 24396000 11098.4 10884.3 9140 9284.7 10709.9 10589.5 9869.6 10762.4 11067.3 10014.7 TRUE FALSE FALSE 9797.462376 11219.63238 9634.136047 9663.370198 9919.852014 10387.52293 10250.27378 11987.54811 10611.10121 9955.132119 0.984161964 1.127019938 0.96775572 0.97069231 0.996456089 1.04343396 1.029647187 1.204157611 1.065892555 1 13.28122475 EAIS(ph)DEDEDEALYQK ddPTM_HeLa_CUDC101_4h_R1 2 EAISDEDEDEALYQK 15 0 Q9C0B7 Q9C0B7 TANGO6 Transport and Golgi organization protein 6 homolog 1 0 EAIS(1)DEDEDEALYQK;EAIS(1)DEDEDEALYQK ; 228.11 5.17E-33 6682400 4806.5 3759.7 3336.2 3079.7 3932.5 3665.2 3279 3550.72 3776.1 3135.9 TRUE FALSE FALSE 4243.089356 3875.531901 3516.565063 3205.303478 3642.40731 3595.292417 3405.472128 3954.919612 3620.44756 3117.247527 1.361165361 1.243254463 1.128099399 1.028247981 1.168469067 1.153354806 1.092461249 1.26872171 1.161424471 1 11.606057 EANNGSS(ph)PAGSLADAMSQK ddPTM_HeLa_CUDC101_4h_R1 2 EANNGSSPAGSLADAMSQK 19 0 C9J4I3;P51692 C9J4I3 STAT5B Signal transducer and activator of transcription 5B 1 0 EANNGS(0.16)S(0.839)PAGS(0.002)LADAMSQK;EANNGS(0.249)S(0.75)PAGS(0.001)LADAMSQK ; 165.06 6.92E-06 31510000 2784.4 2675.4 2680.8 2407.1 2988.6 2648.1 2375.6 2362.8 2935 2831.4 TRUE FALSE FALSE 2458.016853 2757.825903 2825.732157 2505.271942 2768.136932 2597.591905 2467.227688 2631.771601 2814.018058 2814.558707 0.873322289 0.979843091 1.003969876 0.890111809 0.983506553 0.922912675 0.876594857 0.935056567 0.99980791 1 11.45869303 EDLPAENGETKTEESPAS(ph)DEAGEKEAK ddPTM_HeLa_CUDC101_4h_R1 1 EDLPAENGETKTEESPASDEAGEKEAK 27 2 P05114;A6NEL0;A6NL93 P05114 HMGN1 Non-histone chromosomal protein HMG-14 1 0 EDLPAENGET(0.001)KT(0.004)EES(0.054)PAS(0.941)DEAGEKEAK 63.398 0.00089588 38580000 3624.4 3263.8 3948.7 2926.6 3427.3 3499 3341 3462.5 3446 3566.5 TRUE FALSE FALSE 3199.553326 3364.353809 4162.178666 3045.959398 3174.474907 3432.262405 3469.863489 3856.657004 3303.954421 3545.286299 0.902480944 0.948965337 1.17400354 0.859157524 0.895407208 0.968119953 0.97872589 1.087826674 0.931928804 1 11.79168642 EDS(ph)GLFSPIR ddPTM_HeLa_CUDC101_4h_R1 1 EDSGLFSPIR 10 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 EDS(0.512)GLFS(0.488)PIR 89.561 0.029157 11224000 3543.3 3369.2 3170.9 3149.5 3216 3541.7 3280 2823.3 3093.9 3254.9 TRUE FALSE FALSE 3127.959745 3473.001059 3342.328445 3277.950223 2978.762087 3474.147973 3406.510699 3144.69306 2966.368132 3235.53971 0.966750535 1.073391573 1.033004922 1.013107709 0.920638395 1.073746047 1.052841567 0.971922258 0.916807828 1 11.65979067 EELMS(ph)SDLEETAGSTSIPK ddPTM_HeLa_CUDC101_4h_R1 1 EELMSSDLEETAGSTSIPK 19 0 O00567 O00567 NOP56 Nucleolar protein 56 1 0 EELMS(0.662)S(0.338)DLEETAGSTSIPK 141 8.08E-07 0 2412.9 1802.6 1929.5 1957.5 1614.2 2018.2 1787.2 1756.5 1614.8 1853.9 TRUE FALSE FALSE 2130.06352 1858.135969 2033.814606 2037.335311 1495.123682 1979.706198 1856.132903 1956.45286 1548.237261 1842.87292 1.155838526 1.008282204 1.103610881 1.105521324 0.811300478 1.07424998 1.007195278 1.061631998 0.840121553 1 10.84774087 EES(ph)EES(ph)EAEPVQR ddPTM_HeLa_CUDC101_4h_R1 1 EESEESEAEPVQR 13 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 0 EES(1)EES(1)EAEPVQR 127.3 0.013906 20075000 3069 2434.9 1997.8 2083.2 2518.6 2746.8 2352 2342.4 2701 2319.8 TRUE FALSE FALSE 2709.256472 2509.916383 2105.807111 2168.1619 2332.807896 2694.409366 2442.717428 2609.049348 2589.663637 2306.001726 1.174871832 1.088427799 0.913185401 0.940225619 1.011624523 1.168433369 1.059286903 1.13141691 1.123010277 1 11.17117788 EKPGPEMANMAPSVTNNT(ph)DLT(ph)DAR ddPTM_HeLa_CUDC101_4h_R1 1 EKPGPEMANMAPSVTNNTDLTDAR 24 1 Q92805 Q92805 GOLGA1 Golgin subfamily A member 1 2 0 EKPGPEMANMAPS(0.096)VT(0.106)NNT(0.806)DLT(0.992)DAR 43.198 0.0033568 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 EKPTDTEGLEGS(ph)PEKHEPSAVPATEAGEGQQPWGR ddPTM_HeLa_CUDC101_4h_R1 1 EKPTDTEGLEGSPEKHEPSAVPATEAGEGQQPWGR 35 2 O60237;O60237-6 O60237 PPP1R12B Protein phosphatase 1 regulatory subunit 12B 1 0 EKPT(0.001)DT(0.001)EGLEGS(0.955)PEKHEPS(0.043)AVPATEAGEGQQPWGR 80.583 3.49E-08 16797000 964.06 569.02 666.2 788 791.98 779.79 632.45 781.18 729.08 761.99 TRUE FALSE FALSE 851.0543482 586.5508317 702.2167871 820.138046 733.5572132 764.916805 656.8438084 870.1063736 699.0270138 757.4576496 1.123566907 0.774367824 0.927070692 1.082751024 0.968446505 1.00984762 0.867169021 1.148719501 0.922859534 1 9.565021418 EKTDDT(ph)S(ph)GEDNDEKEAVASK ddPTM_HeLa_CUDC101_4h_R1 1 EKTDDTSGEDNDEKEAVASK 20 2 Q9Y618;C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;A0A384DVL6;C9J7T7;C9JQE8 Q9Y618 NCOR2 Nuclear receptor corepressor 2 2 0 EKT(0.186)DDT(0.896)S(0.917)GEDNDEKEAVASK 67.43 0.0021326 0 3794 3500.5 3133.1 3525.8 3525 3415 2852.8 3050.9 3288.1 3261.8 TRUE FALSE FALSE 3349.273071 3608.346256 3302.484863 3669.597364 3264.967773 3349.864565 2962.833452 3398.202124 3152.563126 3242.398669 1.032961524 1.11286323 1.018531402 1.131753908 1.00696062 1.033143949 0.913778272 1.048051912 0.972293493 1 11.66284577 EKTPSPKEEDEEPES(ph)PPEKK ddPTM_HeLa_CUDC101_4h_R1 1 EKTPSPKEEDEEPESPPEKK 20 3 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 0 EKTPSPKEEDEEPES(1)PPEKK 51.786 0.034187 1235800000 2839.4 5453.4 2742.1 3496.6 2960.3 3127.5 3101 2949 2683.8 3216.9 TRUE FALSE FALSE 2506.569836 5621.41279 2890.34622 3639.206462 2741.924567 3067.848148 3220.606609 3284.70224 2573.172628 3197.765736 0.783850364 1.757918889 0.903864279 1.138046612 0.857450105 0.959372387 1.00714276 1.027186639 0.804678279 1 11.64284854 ELES(ph)LLS(ph)QRIY(ph)CPDS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 ELESLLSQRIYCPDSR 16 1 Q9Y2M0;A0A590UK78;A0A590UKC0 Q9Y2M0 FAN1 Fanconi-associated nuclease 1 4 0 ELES(1)LLS(1)QRIY(1)CPDS(1)R;ELES(1)LLS(1)QRIY(1)CPDS(1)R ; 69.485 0.021308 225210000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 ELIPQES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 ELIPQESPR 9 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 0 ELIPQES(1)PR 89.356 0.029581 19864000 4998.3 3202.8 2764.5 2873.5 4473.7 3309.4 3303.3 3094.4 3632.5 3350.3 TRUE FALSE FALSE 4412.406851 3301.474472 2913.957232 2990.69375 4143.684064 3246.278709 3430.709388 3446.653988 3482.766813 3330.372267 1.32489899 0.991322954 0.874964418 0.898005842 1.244210476 0.974749502 1.030127899 1.034915533 1.045759012 1 11.70146773 ELS(ph)PAALEK ddPTM_HeLa_CUDC101_4h_R1 4 ELSPAALEK 9 0 O75683 O75683 SURF6 Surfeit locus protein 6 1 0 ELS(1)PAALEK;ELS(1)PAALEK;ELS(1)PAALEK;ELS(1)PAALEK ;;; 160.72 6.53E-05 854790000 25969.7 22554.6 21233 22163.1 21884 22997.3 21423.1 21539.7 23558 22746.7 TRUE FALSE FALSE 22925.57113 23249.48049 22380.92021 23067.00702 20269.66092 22558.66482 22249.39614 23991.69238 22586.92927 22611.40162 1.013894296 1.028219342 0.98980685 1.020149366 0.896435403 0.99766769 0.983990136 1.061044016 0.998917699 1 14.4647628 EMLWGSSTQLASDGS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 EMLWGSSTQLASDGSPK 17 0 A0A0J9YW64;A6NIW2;Q5JSL3 A0A0J9YW64 DOCK11 Dedicator of cytokinesis protein 11 1 0 EMLWGSSTQLASDGS(1)PK;EMLWGSSTQLASDGS(1)PK ; 271.64 6.21E-86 27318000 9255.1 7479.9 7605.6 8498.5 8638.7 8417.1 7952 7183.4 7866.9 8142.3 TRUE FALSE FALSE 8170.231208 7710.346853 8016.781742 8845.105564 8001.440312 8256.557841 8258.711304 8001.12922 7542.623052 8093.869237 1.009434545 0.952615693 0.990475817 1.092815476 0.988580378 1.020100226 1.020366287 0.988541943 0.931893367 1 12.98261383 ENALSSGTLQEEQRT(ph)PPPGQDTQQFHEK ddPTM_HeLa_CUDC101_4h_R1 1 ENALSSGTLQEEQRTPPPGQDTQQFHEK 28 1 Q12802-4;Q12802;Q12802-2;H0YMW2 Q12802-4 AKAP13 A-kinase anchor protein 13 1 0 ENALS(0.022)S(0.067)GT(0.067)LQEEQRT(0.843)PPPGQDTQQFHEK 71.794 4.74E-05 12649000 1544.9 1147 1485.6 1296.4 1815.3 1262.1 1463.1 1388.8 1276.9 1518.9 TRUE FALSE FALSE 1363.809164 1182.33771 1565.91603 1349.272796 1681.388936 1238.027545 1519.532257 1546.895378 1224.265642 1509.865515 0.903265324 0.783074849 1.037122852 0.893637733 1.113601787 0.819958819 1.006402386 1.024525272 0.810844164 1 10.56020434 ENDTVTIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 ENDTVTISPK 10 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 0 ENDT(0.001)VT(0.016)IS(0.983)PK 84.892 0.036193 15333000 1351.5 1264.6 933.98 1059.2 1231.2 1382.3 1311.3 697.95 1335.3 1239.6 TRUE FALSE FALSE 1193.079219 1303.560827 984.4737839 1102.398754 1140.376829 1355.934931 1361.87728 777.4018068 1280.258369 1232.226804 0.968230211 1.057890335 0.798938784 0.894639486 0.925460171 1.100393958 1.105216406 0.630891817 1.038979484 1 10.26705211 ERESSANNSVSPS(ph)ESLR ddPTM_HeLa_CUDC101_4h_R1 1 ERESSANNSVSPSESLR 17 1 H0YKH0;H0YLW9;Q04726-3;Q04726-6;Q04726-4;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-5;Q04726 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 0 ERESSANNSVS(0.225)PS(0.765)ES(0.011)LR 149.82 6.88E-05 95264000 1283.7 1115.9 1470.9 1039.3 1386 1375.7 1163.9 1271.1 1262.6 1184.4 TRUE FALSE FALSE 1133.226632 1150.279556 1550.421303 1081.687146 1283.757541 1349.460815 1208.792013 1415.796886 1210.555094 1177.355136 0.962518952 0.977003048 1.316868 0.918743303 1.090374095 1.146179919 1.026701269 1.202523217 1.028198762 1 10.20133384 ERSDS(ph)GGSSSEPFDR ddPTM_HeLa_CUDC101_4h_R1 1 ERSDSGGSSSEPFDR 15 1 P48634;P48634-2;P48634-3;P48634-4 P48634 PRRC2A Protein PRRC2A 1 0 ERS(0.005)DS(0.994)GGS(0.001)SSEPFDR 95.9 0.0042746 59625000 459.88 492.42 517.2 452.59 339.52 664.5 381.54 456.04 589.07 521.36 TRUE FALSE FALSE 405.9735635 507.5908765 545.1613964 471.0485765 314.474286 651.8257696 396.2561256 507.9537502 564.7882853 518.2589275 0.783341187 0.979415596 1.051909321 0.90890586 0.606789906 1.257722221 0.764591027 0.980115775 1.089780137 1 9.017529253 ESEEGNPVRGSEEDS(ph)PKK ddPTM_HeLa_CUDC101_4h_R1 2 ESEEGNPVRGSEEDSPKK 18 2 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 0 ESEEGNPVRGSEEDS(1)PKK;ESEEGNPVRGS(0.002)EEDS(0.998)PKK ; 131.98 5.48E-05 120889000 4088.9 3237.9 3479.6 3757 3607.5 3430.9 3257.6 3295.3 3776.3 3516.4 TRUE FALSE FALSE 3609.60534 3337.655861 3667.717701 3910.226699 3341.381912 3365.461299 3383.246723 3670.423632 3620.639316 3495.484296 1.032648135 0.954847906 1.049273116 1.118650913 0.955913867 0.96280258 0.967890694 1.050047238 1.035804772 1 11.77127664 ESS(ph)PLSSR ddPTM_HeLa_CUDC101_4h_R1 1 ESSPLSSR 8 0 A0A0A0MS66;Q14693-6;Q14693;Q14693-2;Q14693-4;Q14693-3;Q14693-5;Q14693-7 A0A0A0MS66 LPIN1 Phosphatidate phosphatase LPIN1 1 0 ES(0.134)S(0.866)PLSSR 112.11 0.010631 11160000 3840.6 2698.8 3375 3497.1 3324 3514.6 3411.7 2510.5 3763.5 3639.4 TRUE FALSE FALSE 3390.41069 2781.946829 3557.462709 3639.726854 3078.795142 3447.564861 3543.290412 2796.285172 3608.366937 3617.752687 0.937159332 0.76897098 0.983334964 1.006073983 0.851024216 0.952957584 0.979417533 0.772934309 0.997405641 1 11.82087807 ESSPLY(ph)SPTFSDSTSAVK ddPTM_HeLa_CUDC101_4h_R1 3 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 ES(0.006)S(0.245)PLY(0.686)S(0.025)PT(0.036)FS(0.002)DSTSAVK;ES(0.014)S(0.394)PLY(0.579)S(0.012)PTFS(0.001)DSTSAVK;ES(0.038)S(0.011)PLY(0.691)S(0.119)PT(0.119)FS(0.021)DSTSAVK ;; 128.68 0.00040295 1688998300 4592.9 6597.3 3904.3 4186.9 4643.2 4444.4 4265.9 4457 4834.5 5295.7 TRUE FALSE FALSE 4054.527224 6800.554993 4115.378268 4357.659879 4300.680387 4359.630475 4430.437192 4964.366864 4635.219864 5264.200941 0.770207534 1.291849432 0.781766941 0.827791326 0.816967368 0.828165665 0.841616276 0.943042813 0.880517274 1 12.36199884 ET(ph)T(ph)ITR ddPTM_HeLa_CUDC101_4h_R1 2 ETTITR 6 0 A6NFH5 A6NFH5 FABP12 Fatty acid-binding protein 12 2 0 ET(1)T(1)ITR;ET(1)T(1)ITR ; 44.447 0.03635 642250000 118.58 0 128.33 63.318 127.21 204.619 194.35 0 129.15 0 TRUE FALSE FALSE 104.6802322 0 135.267908 65.90038172 117.8259717 200.7162335 201.8461446 0 123.8263823 0 0 ETIQGTGSWGPEPPGPGIPPAYS(ph)SPRR ddPTM_HeLa_CUDC101_4h_R1 2 ETIQGTGSWGPEPPGPGIPPAYSSPRR 27 1 Q9H4L4 Q9H4L4 SENP3 Sentrin-specific protease 3 1 0 ETIQGTGSWGPEPPGPGIPPAY(0.296)S(0.352)S(0.352)PRR;ETIQGTGSWGPEPPGPGIPPAY(0.108)S(0.446)S(0.446)PRR ; 76.294 5.64E-05 20244400 1531.71 1388.06 1642.79 1284.61 1546.93 1401.22 1349.4 1367.84 1729.43 1443.02 TRUE FALSE FALSE 1352.165276 1430.824483 1731.604197 1337.001948 1432.816056 1374.494063 1401.44681 1523.549377 1658.142163 1434.436853 0.942645382 0.997481681 1.207166557 0.932074455 0.998870081 0.958211622 0.977001398 1.062123699 1.155953404 1 10.48626874 ETPAATEAPS(ph)STPK ddPTM_HeLa_CUDC101_4h_R1 1 ETPAATEAPSSTPK 14 0 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 ETPAATEAPS(0.783)S(0.186)T(0.03)PK 149.3 0.00025649 10315000 2700.5 6329.9 2622.2 3439.9 3171.5 3084 2991.5 4085.7 2652.6 4274.1 TRUE FALSE FALSE 2383.951484 6524.916716 2763.964064 3580.193991 2937.544764 3025.177838 3106.883157 4550.799573 2543.258705 4248.677463 0.561104368 1.535752425 0.650546926 0.84266081 0.691402157 0.712028123 0.731258888 1.071109684 0.598600088 1 12.05279811 EVGS(ph)PPLDPTER ddPTM_HeLa_CUDC101_4h_R1 2 EVGSPPLDPTER 12 0 A0A1B0GV79;A0A1B0GW21;A0A1B0GTE6;A0A0D9SFK7;A0A1B0GUH6;A0A1B0GUA3;Q96EK5 A0A1B0GV79 KIF1BP;KIAA1279 KIF1-binding protein 1 0 EVGS(1)PPLDPTER;EVGS(1)PPLDPTER ; 125.36 0.0024653 8553400 4268.6 3399.7 3430.7 3402 4544 3690.3 3273.5 3561.8 3564.2 3529.5 TRUE FALSE FALSE 3768.241179 3504.440727 3616.174019 3540.748265 4208.798173 3619.913676 3399.759992 3967.260915 3417.282167 3508.506377 1.074030021 0.998841202 1.030687601 1.009189633 1.199598268 1.031753483 0.969004934 1.130754939 0.973999132 1 11.77664127 FDIYDPFHPTDEAYS(ph)PPPAPEQK ddPTM_HeLa_CUDC101_4h_R1 4 FDIYDPFHPTDEAYSPPPAPEQK 23 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 0 FDIYDPFHPTDEAY(0.253)S(0.746)PPPAPEQK;FDIYDPFHPT(0.005)DEAY(0.447)S(0.548)PPPAPEQK;FDIYDPFHPTDEAY(0.148)S(0.852)PPPAPEQK;FDIYDPFHPTDEAY(0.139)S(0.861)PPPAPEQK ;;; 139.73 1.48E-07 858120000 21067 17406.8 15686.1 15997 22443.9 19877.5 20031.6 18880.2 21151.5 20117.7 TRUE FALSE FALSE 18597.5582 17943.08288 16534.13801 16649.4268 20788.25821 19498.36981 20804.22552 21029.44565 20279.62622 19998.03903 0.929969092 0.897242117 0.826787966 0.832552971 1.039514834 0.975014089 1.040313277 1.051575388 1.01408074 1 14.28757092 K(ac)GATPGKALVATPGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 KGATPGKALVATPGKK 16 3 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 2 K(0.921)GATPGK(0.079)ALVATPGK(1)K 124.92 1.77E-05 0 1044.7 1269.5 1439 1823.1 1963.6 1826.1 1736.7 3184.5 820.92 797.55 FALSE TRUE FALSE 922.2418497 1308.61179 1516.796693 1897.453898 1818.74914 1791.270185 1803.685101 3547.010608 787.0813301 792.8061371 1.163262753 1.650607543 1.913199989 2.393339064 2.294065415 2.259405044 2.275064504 4.473994892 0.992779058 1 9.63082432 -1 0.247357597 0.916553991 19.0980733 0.81718185 0.413038973 13.80208789 0.171738585 0.231739865 105.2679234 0.1 1 18.1815193 FDQLFDDES(ph)DPFEVLK ddPTM_HeLa_CUDC101_4h_R1 2 FDQLFDDESDPFEVLK 16 0 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 FDQLFDDES(1)DPFEVLK;FDQLFDDES(1)DPFEVLK ; 128.69 0.00010874 0 1230.76 1107.937 828.01 1090.18 971.672 1034.5 967.736 1059.378 911.87 1093.114 TRUE FALSE FALSE 1086.492179 1142.071226 872.7747252 1134.642253 899.9936924 1014.768636 1005.061902 1179.973309 874.2823326 1086.612109 0.999889629 1.051038559 0.803207251 1.044201738 0.828256638 0.933883055 0.924950029 1.085919528 0.804594689 1 10.08562131 FLET(ph)DS(ph)EEEQEEVNEK ddPTM_HeLa_CUDC101_4h_R1 1 FLETDSEEEQEEVNEK 16 0 Q76FK4-2;Q76FK4-4;Q76FK4;F8WE42;F5H101 Q76FK4-2 NOL8 Nucleolar protein 8 2 0 FLET(1)DS(1)EEEQEEVNEK 125.41 0.0019069 6596700 2456.9 1813.9 1346.9 1556.7 1724 1943.6 1743.2 1509.4 1958.2 1570 TRUE FALSE FALSE 2168.905906 1869.784109 1419.717488 1620.188955 1596.823955 1906.529068 1810.435808 1681.223995 1877.482167 1560.66157 1.389734935 1.198071475 0.909689529 1.038142404 1.023171189 1.221615951 1.160043819 1.077250845 1.203004036 1 10.60794201 FPVLSY(ph)Y(ph)Y(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 FPVLSYYYK 9 0 Q9Y216-2;Q9Y216 Q9Y216-2 MTMR7 Myotubularin-related protein 7 3 0 FPVLS(0.139)Y(0.966)Y(0.9)Y(0.995)K 49.423 0.0031707 0 740.31 843.73 678.25 837.04 968.97 700.27 811.47 942.59 602.1 930.98 TRUE FALSE FALSE 653.531984 869.7243212 714.9182466 871.1781092 897.4910136 686.9135165 842.7686697 1049.890636 577.2811832 925.4424896 0.706183249 0.939792943 0.772515045 0.941363855 0.969796636 0.742254137 0.910665632 1.134474208 0.623789365 1 9.853999528 FSAS(ph)SGGGGSR ddPTM_HeLa_CUDC101_4h_R1 4 FSASSGGGGSR 11 0 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5;H0YD77;H0YEC5;H0YD99;H0YEN8;H0YDC0;H0YCF8 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 0 FSAS(0.5)S(0.5)GGGGSR;FS(0.001)AS(0.499)S(0.499)GGGGSR;FS(0.001)AS(0.499)S(0.499)GGGGSR;FSAS(0.5)S(0.5)GGGGSR ;;; 132.03 0.001841 156444000 17471.7 10871 13694.8 15300.5 15183.4 12677.6 14704.2 13303.9 14206.5 13858.7 TRUE FALSE FALSE 15423.69381 11205.92262 14435.18231 15924.52052 14063.35083 12435.7959 15271.34592 14818.3622 13620.90206 13776.26784 1.119584346 0.813422239 1.04782968 1.155938656 1.020838953 0.902697019 1.108525625 1.075644171 0.988722216 1 13.74989748 FT(ph)S(ph)SRMS(ph)S(ph)FNR ddPTM_HeLa_CUDC101_4h_R1 1 FTSSRMSSFNR 11 1 Q8NI51-11;Q8NI51-6 Q8NI51-11 CTCFL Transcriptional repressor CTCFL 4 0 FT(0.987)S(0.75)S(0.263)RMS(1)S(1)FNR 56.956 0.0032472 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 FTFPALEEDVIYDDVPCES(ph)PDAHQPGAER ddPTM_HeLa_CUDC101_4h_R1 1 FTFPALEEDVIYDDVPCESPDAHQPGAER 29 0 Q9HCE6-5;Q9HCE6-3;Q9HCE6-2;Q9HCE6 Q9HCE6-5 ARHGEF10L Rho guanine nucleotide exchange factor 10-like protein 1 0 FTFPALEEDVIY(0.032)DDVPCES(0.968)PDAHQPGAER 72.495 3.72E-05 2088000 663.45 388.32 525.41 403.98 761.27 672.57 597.88 204.33 866.82 485.33 TRUE FALSE FALSE 585.6813967 400.2836789 553.8152539 420.4560506 705.1126288 659.7418478 620.9404319 227.5901013 831.0893127 482.4432356 1.213990276 0.829701091 1.147938686 0.871514034 1.46154527 1.367501499 1.287074595 0.471744828 1.722667563 1 8.914215394 GAASTLVPGVSET(ph)SASPGSPSVR ddPTM_HeLa_CUDC101_4h_R1 1 GAASTLVPGVSETSASPGSPSVR 23 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 0 GAASTLVPGVS(0.002)ET(0.407)S(0.198)AS(0.393)PGSPSVR 192.25 6.38E-14 70674000 2939.3 2200.4 2405.9 2070.2 2794.8 2649.8 2718.8 2004.2 2369.8 2382.9 TRUE FALSE FALSE 2594.75971 2268.191716 2535.970231 2154.631704 2588.633172 2599.25948 2823.665027 2232.350027 2272.115841 2368.726405 1.095423982 0.957557492 1.070604957 0.909616113 1.092837555 1.09732364 1.192060434 0.942426285 0.959214131 1 11.20989586 GCLTTPNS(ph)PSMHSR ddPTM_HeLa_CUDC101_4h_R1 3 GCLTTPNSPSMHSR 14 0 O75128-3;O75128;O75128-7;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4 O75128-3 COBL Protein cordon-bleu 1 0 GCLTT(0.003)PNS(0.986)PS(0.011)MHSR;GCLT(0.032)T(0.032)PNS(0.468)PS(0.468)MHSR;GCLT(0.338)T(0.044)PNS(0.573)PS(0.044)MHS(0.001)R ;; 173.19 3.57E-07 15922800 6070.4 3699.32 3384.88 3367.23 4252.2 3657.3 3597.58 4785.1 4819 3660.48 TRUE FALSE FALSE 5358.836914 3813.291664 3567.876852 3504.560194 3938.523678 3587.543096 3736.339866 5329.816442 4620.35878 3638.707302 1.472730964 1.047979776 0.980534172 0.963133306 1.082396398 0.985938906 1.026831662 1.464755475 1.269780281 1 11.82921029 GDAPVDKVELSEDS(ph)PNSEQDLEK ddPTM_HeLa_CUDC101_4h_R1 1 GDAPVDKVELSEDSPNSEQDLEK 23 1 Q5T5P2;Q5T5P2-2;Q5T5P2-7;Q5T5P2-3;Q5T5P2-9;Q5T5P2-4;Q5T5P2-8;Q5T5P2-6 Q5T5P2 KIAA1217 Sickle tail protein homolog 1 0 GDAPVDKVELSEDS(0.632)PNS(0.368)EQDLEK 135.17 1.00E-07 10353000 1374.2 1433.6 1380.6 1613 1490.6 1286.9 1259 1461.4 1509.2 1510 TRUE FALSE FALSE 1213.118359 1477.767517 1455.239412 1678.785112 1380.641408 1262.354527 1307.560052 1627.759869 1446.990137 1501.018453 0.808196833 0.984509893 0.969501347 1.118430695 0.919803088 0.840998673 0.871115241 1.084436947 0.964005562 1 10.551726 GDS(ph)ES(ph)EEDEDLEVPVPSR ddPTM_HeLa_CUDC101_4h_R1 1 GDSESEEDEDLEVPVPSR 18 0 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 2 0 GDS(1)ES(0.999)EEDEDLEVPVPS(0.001)R 99.569 0.001119 0 824.41 717.27 488.41 506.44 527.04 546.23 606.06 549.18 661.33 463.39 TRUE FALSE FALSE 727.7739095 739.3682385 514.814922 527.0948122 488.1613092 535.8115728 629.4359372 611.6964313 634.0696975 460.6337357 1.579940532 1.605110918 1.11762314 1.144281826 1.05976022 1.163205235 1.366456446 1.327945359 1.376515979 1 8.847476264 VSAVPTNMAAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VSAVPTNMAAKK 12 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 1 ; VSAVPTNMAAK(1)K;VSAVPTNMAAK(1)K 132.32 0.00042884 2467800 3264.9 2481.6 1499.25 2406.5 1869.42 1999.3 1739.81 1633.83 1168.11 750.14 FALSE TRUE FALSE 2882.193371 2558.055155 1580.30399 2504.647472 1731.516611 1961.166684 1806.915054 1819.818603 1119.960011 745.6781339 3.865197651 3.43050847 2.119284337 3.3588855 2.322069714 2.630044512 2.42318364 2.440488088 1.501934897 1 9.542409227 -9.523819082 1.296513123 1.005923285 2.927066191 0.551780431 0.556748032 0.255582216 0.772977987 0.427727398 0.103906832 2.99E-10 9.523819082 1.921142905 GEVPGGSAHY(ph)GGPSPEKK ddPTM_HeLa_CUDC101_4h_R1 1 GEVPGGSAHYGGPSPEKK 18 1 J3KS37;O94762-4;O94762 J3KS37 RECQL5 ATP-dependent DNA helicase Q5 1 0 GEVPGGSAHY(0.792)GGPS(0.208)PEKK 54.237 0.03205 14233000 3417.6 1900.3 1786 1447.5 3396.8 3037.4 2965.6 2354.4 2961.7 2509.4 TRUE FALSE FALSE 3016.994109 1958.845991 1882.556562 1506.535307 3146.224831 2979.466656 3079.984185 2622.415379 2839.617472 2494.473977 1.209471069 0.785274173 0.7546908 0.603949097 1.261277873 1.194426834 1.234722917 1.051289933 1.138363237 1 11.2845199 VSDGDWICPDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 VSDGDWICPDKK 12 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 0 1 VSDGDWICPDK(1)K 134.98 0.00038313 658800 767.99 389.82 369.55 448.11 729.08 619.29 646.15 578.97 679.27 288.89 FALSE TRUE FALSE 677.9673764 401.8298921 389.5289908 466.3858627 675.2972209 607.4780751 671.0722219 644.8776045 651.2702031 287.1716694 2.360843525 1.39926718 1.356432519 1.624066412 2.351545409 2.115383026 2.336832959 2.245617076 2.267877623 1 8.165769619 -9.472390617 1.086831611 0.972481075 1.993084616 0 0.535127104 0.403547363 0.814582735 0.328084066 0.07221281 3.37E-10 9.472390617 1.02060354 GFSQYGVS(ph)GSPTK ddPTM_HeLa_CUDC101_4h_R1 1 GFSQYGVSGSPTK 13 0 Q9NXC5 Q9NXC5 MIOS WD repeat-containing protein mio 1 0 GFSQYGVS(0.962)GS(0.034)PT(0.003)K 194.77 2.26E-16 117640000 2949.5 2400.7 2841.2 2603.8 2534.1 2644.1 2571.3 2443.7 3089.5 2790.7 TRUE FALSE FALSE 2603.764081 2474.662721 2994.803866 2709.994219 2347.164492 2593.668198 2670.475902 2721.88093 2962.149502 2774.100792 0.938597505 0.892059412 1.079558419 0.976891044 0.846099211 0.934958169 0.962645593 0.981175932 1.067787267 1 11.43780449 KAEEK(ac)LESYR ddPTM_HeLa_CUDC101_4h_R1 1 KAEEKLESYR 10 2 Q8N954-2;A0A6I8PRS5;Q8N954 Q8N954-2 GPATCH11 G patch domain-containing protein 11 0 1 KAEEK(1)LESYR 89.266 0.0366 9164300 4605.7 5215.8 5150.4 5823.8 6179.7 5559.7 5898.5 9594 2916.9 2940.6 FALSE TRUE FALSE 4065.826828 5376.492616 5428.846203 6061.319737 5723.835843 5453.657986 6126.007121 10686.14218 2796.664147 2923.10918 1.390925407 1.839306124 1.857216364 2.073586501 1.958132758 1.865704512 2.095716151 3.65574514 0.956742966 1 11.513288 -1 0.200805434 0.958061342 10.89669041 0.775983452 0.338358256 17.70809842 0.203527662 0.317792496 55.87736751 0.1 1 9.938629063 GGDSIGET(ph)PT(ph)PGASK ddPTM_HeLa_CUDC101_4h_R1 1 GGDSIGETPTPGASK 15 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 0 GGDSIGET(0.992)PT(0.918)PGAS(0.09)K 139.21 0.0074321 32697000 14149 10185 9369.2 10094 11855 12282 11137 7566.1 10051 10436 TRUE FALSE FALSE 12490.47567 10498.78778 9875.727292 10505.67695 10980.48027 12047.74131 11566.55782 8427.394241 9636.693526 10373.92621 1.204025884 1.012036096 0.951975857 1.012700181 1.058469093 1.161348276 1.114964343 0.812363041 0.928934073 1 13.34067439 GGDSIGET(ph)PTPGASK ddPTM_HeLa_CUDC101_4h_R1 1 GGDSIGETPTPGASK 15 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 0 GGDSIGET(0.95)PT(0.05)PGASK 106.82 0.015238 14950000 6859.5 5987.7 4996.4 5681 6142.6 5723.6 5994.7 5191.5 5745.3 5929 TRUE FALSE FALSE 6055.439808 6172.17394 5266.520497 5912.695735 5689.472636 5614.431866 6225.917587 5782.479375 5508.476302 5893.734044 1.027436895 1.047243376 0.893579598 1.003217263 0.965342615 0.952610319 1.056362153 0.981123229 0.934632656 1 12.52496624 GGEFDEFVNDDT(ph)DDDLPISK ddPTM_HeLa_CUDC101_4h_R1 4 GGEFDEFVNDDTDDDLPISK 20 0 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 0 GGEFDEFVNDDT(1)DDDLPISK;GGEFDEFVNDDT(1)DDDLPISK;GGEFDEFVNDDT(1)DDDLPISK;GGEFDEFVNDDT(0.996)DDDLPIS(0.004)K ;;; 178.79 2.21E-08 53531400 27767.3 23044.6 21682.5 21434.4 26174.3 24457.1 22468.9 21814.5 24861.5 22469.1 TRUE FALSE FALSE 24512.45919 23754.57681 22854.72154 22308.58748 24243.47404 23990.62157 23335.533 24297.7745 23836.69845 22335.45279 1.097468648 1.063536837 1.023248633 0.99879719 1.08542568 1.074105002 1.044775461 1.087856813 1.067213576 1 14.44704788 GGGGGGQGAEGPPGT(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 GGGGGGQGAEGPPGTPR 17 0 Q8TER5;Q8TER5-3;G3V485;G3V3N2;G3V5C1;Q8TER5-4 Q8TER5;Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 GGGGGGQGAEGPPGT(1)PR;GGGGGGQGAEGPPGT(1)PR ; 114.06 0.0034157 20796900 3379.38 6821.8 6189.9 6741.5 7797.1 8334.6 6613.31 3888.23 8947.5 8780.4 TRUE FALSE FALSE 2983.254199 7031.971572 6524.544717 7016.447509 7221.923467 8175.631391 6868.387582 4330.850386 8578.680263 8728.17379 0.341795921 0.80566356 0.747526902 0.803884945 0.827426635 0.936694386 0.786921497 0.496192043 0.982872302 1 13.09146411 GGGGNFGPGPGS(ph)NFR ddPTM_HeLa_CUDC101_4h_R1 1 GGGGNFGPGPGSNFR 15 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 GGGGNFGPGPGS(1)NFR 157.37 8.69E-05 28165000 2192.4 2186.6 2367.4 2019.8 2233.8 2012.8 2235.3 1994.7 2292.2 2382.9 TRUE FALSE FALSE 1935.410195 2253.966554 2495.388805 2102.176174 2069.017024 1974.409194 2321.51627 2221.768585 2197.714546 2368.726405 0.817067852 0.951552087 1.053472786 0.887471077 0.873472352 0.833531973 0.980069401 0.937959142 0.927804301 1 11.20989586 VSELKEELK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 VSELKEELKK 10 2 A0A1W2PPS1;Q00839-2;Q00839;A0A1X7SBS1 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 1 VSELKEELK(1)K 73.951 0.02982 0 2639 1437.2 1177 973.03 2641.1 2456.3 2428.2 2633.9 2583.9 2036 FALSE TRUE FALSE 2329.66042 1481.478428 1240.63218 1012.714369 2446.271315 2409.45017 2521.856487 2933.732529 2477.390548 2023.889781 1.151080677 0.731995607 0.612993944 0.500380198 1.208697893 1.190504637 1.24604438 1.44955153 1.224073846 1 10.98291501 -5.545332863 24.99478595 0.966192574 1.275295996 0.387747987 0.231693372 251.4937063 279949.2372 0.037737877 0.075479563 2.85E-06 5.545332863 0.309103423 VSEMPAAK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 VSEMPAAKR 9 1 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 0 1 VSEMPAAK(1)R 104.2 0.0027495 0 1634.3 1122.2 889.98 1010.5 1192.1 1146.1 1015.4 1094.3 1048.3 798.03 FALSE TRUE FALSE 1442.729831 1156.773652 938.0950108 1051.712558 1104.161158 1124.240052 1054.564318 1218.870689 1005.08863 793.2832821 1.818681755 1.458210047 1.182547309 1.325771741 1.391887593 1.41719872 1.329366623 1.536488561 1.266998376 1 9.631692335 -9.655084975 1.51293933 1.001310832 1.478410633 0.239140675 0.179972225 0.309020584 1.277919157 0.145884419 0.033273986 2.21E-10 9.655084975 0.477099801 GGLLTSEEDSGFST(ph)SPKDNSLPK ddPTM_HeLa_CUDC101_4h_R1 2 GGLLTSEEDSGFSTSPKDNSLPK 23 1 Q9UQR1 Q9UQR1 ZNF148 Zinc finger protein 148 1 0 GGLLT(0.002)S(0.005)EEDS(0.053)GFS(0.087)T(0.426)S(0.426)PKDNS(0.002)LPK;GGLLTSEEDSGFS(0.034)T(0.868)S(0.098)PKDNSLPK ; 109.91 1.06E-05 133608000 5563.6 5546.4 5761.3 4796.2 5425.8 4984.4 4697.5 6222 5813.7 5976.9 TRUE FALSE FALSE 4911.443242 5717.27801 6072.773305 4991.809767 5025.549544 4889.330875 4878.684149 6930.28733 5574.056825 5941.349133 0.826654541 0.962286155 1.022120257 0.840181187 0.845859994 0.822932766 0.821140795 1.166450107 0.938180319 1 12.53657485 VSFELFADK ddPTM_HeLa_CUDC101_4h_R1 1 VSFELFADK 9 0 P62937;F8WE65;C9J5S7 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 111.46 0.039721 245740 0 0 0 66.386 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 69.09350802 0 0 0 0 0 0 0 VSFELFADK(ac)VPK ddPTM_HeLa_CUDC101_4h_R1 1 VSFELFADKVPK 12 1 P62937;F8WE65;C9J5S7 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 1 VSFELFADK(1)VPK 136.53 0.00036063 248240 206.93 73.829 0 127.95 0 61.241 205 158.16 0 0 FALSE TRUE FALSE 182.6739791 76.10358398 0 133.168354 0 60.07292996 212.9069187 176.1642951 0 0 0 VSFELFADKVPK ddPTM_HeLa_CUDC101_4h_R1 3 VSFELFADKVPK 12 1 P62937;F8WE65;C9J5S7 P62937 PPIA "Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase" 0 0 ;; ;; 122.18 0.0045316 49526000 7671.8 7042.8 6509.9 7098.7 8403.9 7121.1 7067.4 6915.6 6577.5 6395.3 FALSE FALSE TRUE 6772.523234 7259.78032 6861.844885 7388.215669 7783.96104 6985.276882 7339.991985 7702.84395 6306.372666 6357.260471 1.065321024 1.141966788 1.079371361 1.162169727 1.224420657 1.098787271 1.15458412 1.211660901 0.991995325 1 12.63418948 -7.337272506 0.463846986 1.001315438 1.179580347 0.741089572 0.038802203 0.322653743 0.174382313 0.017600575 0.019342331 4.60E-08 7.337272506 0.17826491 GGSPYNQFDIIPGDT(ph)LGGHTGPAGDSWLPAKSPPTNK ddPTM_HeLa_CUDC101_4h_R1 1 GGSPYNQFDIIPGDTLGGHTGPAGDSWLPAKSPPTNK 37 1 Q9UPQ9-1;Q9UPQ9;H0Y720;Q9UPQ9-2 Q9UPQ9-1 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 0 GGSPYNQFDIIPGDT(0.429)LGGHT(0.429)GPAGDS(0.019)WLPAKS(0.108)PPT(0.015)NK 61.228 0.00014346 14452000 940.32 703.2 636.42 729.72 1167.6 1071.7 800.95 776.23 1044.6 1002.5 TRUE FALSE FALSE 830.097115 724.8647585 670.8267903 759.4811357 1081.468474 1051.259108 831.8429098 864.5928856 1001.541146 996.5370854 0.832981659 0.727383626 0.673157879 0.762120293 1.085226521 1.054912179 0.834733521 0.867597301 1.005021449 1 9.960779685 GGSS(ph)KDLLDNQSQEEQR ddPTM_HeLa_CUDC101_4h_R1 2 GGSSKDLLDNQSQEEQR 17 1 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3;O43432-4 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 0 GGS(0.221)S(0.776)KDLLDNQS(0.004)QEEQR;GGS(0.202)S(0.798)KDLLDNQSQEEQR ; 93.106 0.00084065 71069000 3769.9 3392.8 3354.9 3175.4 3730 4178.6 3372.4 2281.7 3110.1 3801.7 TRUE FALSE FALSE 3327.998037 3497.328147 3536.276042 3304.906537 3454.845331 4098.900167 3502.474598 2541.439505 2981.900362 3779.087319 0.88063539 0.925442534 0.935748699 0.874525053 0.91420098 1.084627007 0.926804358 0.672500869 0.789053046 1 11.88382214 GIHNT(ph)PLDMMSIVQAK ddPTM_HeLa_CUDC101_4h_R1 1 GIHNTPLDMMSIVQAK 16 0 H0Y786;A0A087X1N7;P20929-3;P20929-2 H0Y786 NEB Nebulin 1 0 GIHNT(0.998)PLDMMS(0.002)IVQAK 63.682 0.023441 11946000 1095 1083.5 782.92 756.33 900.16 927.95 682.83 877.53 1020.6 877.4 TRUE FALSE FALSE 966.6457599 1116.881351 825.2470234 787.1764065 833.7569902 910.2508998 709.1669818 977.4244681 978.530436 872.1811858 1.108308429 1.28056116 0.946187601 0.902537706 0.955944709 1.04364886 0.813095941 1.120666765 1.121934814 1 9.768484059 GKLS(ph)AEENPDDSEVPSSSGINSTK ddPTM_HeLa_CUDC101_4h_R1 4 GKLSAEENPDDSEVPSSSGINSTK 24 1 A0A494C1S7;Q9Y5Q9-2;Q9Y5Q9 A0A494C1S7 GTF3C3 General transcription factor 3C polypeptide 3 1 0 GKLS(0.999)AEENPDDS(0.001)EVPSSSGINSTK;GKLS(1)AEENPDDSEVPSSSGINSTK;GKLS(1)AEENPDDSEVPSSSGINSTK;GKLS(1)AEENPDDSEVPSSSGINSTK ;;; 121.41 1.00E-08 691148200 15446.8 10172.5 9530.5 10796.6 13114 11879.8 10622.2 8573.4 10258.5 10299.2 TRUE FALSE FALSE 13636.14952 10485.90267 10045.74766 11236.93201 12146.60635 11653.21261 11031.90181 9549.361201 9835.640288 10237.9399 1.331923185 1.024219987 0.98122745 1.097577454 1.186430714 1.138238036 1.077550945 0.932742455 0.960705023 1 13.32163782 GKPPPLLPSVLGPAGGDREALGLGPPAAQLT(ph)PPPAPVGLR ddPTM_HeLa_CUDC101_4h_R1 2 GKPPPLLPSVLGPAGGDREALGLGPPAAQLTPPPAPVGLR 40 2 A0A087WZ13;Q8IY67-2;E9PAU2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 0 GKPPPLLPS(0.005)VLGPAGGDREALGLGPPAAQLT(0.995)PPPAPVGLR;GKPPPLLPSVLGPAGGDREALGLGPPAAQLT(1)PPPAPVGLR ; 59.399 0.00016361 73223000 3284 3834.9 3697.7 3363.1 4697.5 3431.7 3910 3760.9 4155.2 3973.9 TRUE FALSE FALSE 2899.054498 3953.048724 3897.608847 3500.261755 4350.974784 3366.24604 4060.81001 4189.025654 3983.920897 3950.263066 0.733888971 1.000705183 0.986670706 0.886083204 1.101439249 0.852157435 1.027984704 1.060442199 1.008520402 1 11.94773302 GLDS(ph)GAET(ph)EEEKDTWEEK ddPTM_HeLa_CUDC101_4h_R1 1 GLDSGAETEEEKDTWEEK 18 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 2 0 GLDS(1)GAET(1)EEEKDTWEEK 81.226 0.012588 19610000 5790.3 5055.2 6019.2 5303.4 5936.9 5272.9 5268 5140.7 5196.9 5507.1 TRUE FALSE FALSE 5111.569812 5210.94472 6344.616159 5519.695575 5498.946715 5172.328218 5471.188525 5725.896509 4982.681582 5474.343524 0.933732015 0.95188486 1.158972967 1.008284473 1.004494272 0.944830772 0.999423675 1.04595126 0.910187963 1 12.41847025 GLNTS(ph)QES(ph)DDDILDESSSPEGTQK ddPTM_HeLa_CUDC101_4h_R1 1 GLNTSQESDDDILDESSSPEGTQK 24 0 Q5VV41 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 2 0 GLNT(0.355)S(0.689)QES(0.956)DDDILDESSSPEGTQK 117.22 3.87E-07 4906500 1746.9 1475.8 1015.5 1568 1358 1348.2 1266.3 1140.8 1349.4 1407.3 TRUE FALSE FALSE 1542.13103 1521.267649 1070.401002 1631.949817 1257.823046 1322.485331 1315.141615 1270.664061 1293.777161 1398.929317 1.102365224 1.087451403 0.765157316 1.166570603 0.899132665 0.945355362 0.940105836 0.908311839 0.924833832 1 10.45010735 GLPNGPTHAFS(ph)SPSES(ph)PDSTVDR ddPTM_HeLa_CUDC101_4h_R1 1 GLPNGPTHAFSSPSESPDSTVDR 23 0 Q9ULJ7-2;Q9ULJ7 Q9ULJ7-2 ANKRD50 Ankyrin repeat domain-containing protein 50 2 0 GLPNGPTHAFS(0.674)S(0.312)PS(0.089)ES(0.867)PDS(0.032)T(0.027)VDR 102.06 0.00018468 9303600 600.49 711.26 432.43 425.59 453.09 435.54 680.14 293.57 578.23 534.05 TRUE FALSE FALSE 530.1014725 733.1730775 455.8084738 442.9473998 419.6664534 427.2328002 706.3732276 326.9888221 554.3951147 530.8734468 0.998545841 1.381069409 0.858601003 0.83437475 0.790520709 0.804773346 1.33058685 0.615944957 1.044307486 1 9.052224173 VSHLLGINVTDFTR ddPTM_HeLa_CUDC101_4h_R1 2 VSHLLGINVTDFTR 14 0 P35579;P35579-2 P35579 MYH9 Myosin-9 0 0 ; ; 115.83 0.0020012 16092300 4040.5 3674.6 3163.2 3393.1 3801 3772.5 3135.4 3328.3 3263.54 3327.5 FALSE FALSE TRUE 3566.878715 3787.810071 3334.21216 3531.485284 3520.607803 3700.545848 3256.333428 3707.180219 3129.0155 3307.707882 1.078353604 1.14514649 1.008012884 1.067653315 1.064364789 1.118764407 0.984468262 1.120770138 0.945976976 1 11.69161611 -9.165103747 0.949912235 1.000601686 1.071381785 0.357762526 0.050288899 0.587227581 0.966888669 0.027603483 0.008185259 6.84E-10 9.165103747 0.070780099 GLSDHVS(ph)LDGQELGTR ddPTM_HeLa_CUDC101_4h_R1 5 GLSDHVSLDGQELGTR 16 0 Q7L8J4-2;Q7L8J4 Q7L8J4-2 SH3BP5L SH3 domain-binding protein 5-like 1 0 GLSDHVS(1)LDGQELGTR;GLS(0.222)DHVS(0.776)LDGQELGT(0.002)R;GLS(0.001)DHVS(0.999)LDGQELGTR;GLSDHVS(1)LDGQELGTR;GLS(0.004)DHVS(0.995)LDGQELGT(0.001)R ;;;; 191.41 2.04E-11 152734000 20031.5 11268.94 9925.93 9008.08 22324.8 18562.2 18511.9 17015.6 17240.3 16215.6 TRUE FALSE FALSE 17683.43794 11616.12268 10462.5558 9375.468439 20677.94398 18208.15696 19225.91018 18952.58712 16529.64754 16119.14889 1.097045387 0.720641193 0.649076193 0.581635451 1.282818598 1.129597914 1.192737304 1.175780884 1.025466521 1 13.97648795 GLVAAYSGDS(ph)DNEEELVERLESEEEK ddPTM_HeLa_CUDC101_4h_R1 1 GLVAAYSGDSDNEEELVERLESEEEK 26 1 P52756 P52756 RBM5 RNA-binding protein 5 1 0 GLVAAY(0.002)S(0.015)GDS(0.983)DNEEELVERLESEEEK 117.48 7.84E-09 12600000 1085.7 1382.9 1195.1 1274.2 1827.2 1329.8 1414.3 1949.7 1654.5 1683.3 TRUE FALSE FALSE 958.4358918 1425.50551 1259.710721 1326.167384 1692.411096 1304.436281 1468.850025 2171.645967 1586.30081 1673.287657 0.572786088 0.851918978 0.752835722 0.792551943 1.011428662 0.779564874 0.877822781 1.297831821 0.948014409 1 10.70846977 VSISEGDDKIEYR ddPTM_HeLa_CUDC101_4h_R1 2 VSISEGDDKIEYR 13 1 M0R0P1;M0R299;M0QXL5;M0R2Q4;P22087;M0R2U2;M0R1H0;M0R2B0 M0R0P1 FBL rRNA 2-O-methyltransferase fibrillarin 0 0 ; ; 118.76 0.00293 34706000 7150.5 6799.8 6213.9 5974.2 6592.5 6539.7 6177.4 7022.7 7124.8 6806.1 FALSE FALSE TRUE 6312.329229 7009.293778 6549.84223 6217.853699 6106.184409 6414.966118 6415.664387 7822.135781 6831.112728 6765.617015 0.933001264 1.036016931 0.968107154 0.919037197 0.902531786 0.948171631 0.948274839 1.156160002 1.009680671 1 12.7240058 -4.258901309 24.68427927 0.962238433 1.156160085 0.680101527 0.039791094 90.23583437 877535.5546 0.005747727 0.051951681 5.51E-05 4.258901309 0.193921651 GPLS(ph)PFNSR ddPTM_HeLa_CUDC101_4h_R1 2 GPLSPFNSR 9 0 A1L390-3;A1L390;A0A0U1RR71;G3V3I3;G3V278 A1L390-3 PLEKHG3 Pleckstrin homology domain-containing family G member 3 1 0 GPLS(0.843)PFNS(0.157)R;GPLS(0.999)PFNS(0.001)R ; 91.469 0.026602 96393000 5305.8 4787.8 4070.4 4074.7 4647 3977.9 4054.8 4789.1 5173.8 4340.7 TRUE FALSE FALSE 4683.862167 4935.306443 4290.458136 4240.883878 4304.200068 3902.028185 4211.194994 5334.271786 4960.533774 4314.881323 1.085513556 1.143787296 0.994339778 0.982850642 0.997524554 0.904318773 0.975970062 1.236249942 1.149633884 1 12.07510516 VSLDVNHFAPDELTVK ddPTM_HeLa_CUDC101_4h_R1 2 VSLDVNHFAPDELTVK 16 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 0 0 ; ; 121.82 0.00050162 47932000 8030.5 5739.5 5100.7 5162.3 7631.2 6354 6805.3 5874.1 6364.2 6543.5 FALSE FALSE TRUE 7089.176963 5916.327192 5376.459271 5372.840907 7068.261579 6232.808036 7067.782701 6542.7838 6101.864982 6504.578971 1.08987484 0.909563435 0.8265653 0.826009021 1.086659354 0.95821852 1.086585732 1.005873528 0.938087616 1 12.66723996 -12.15962733 8.745121754 0.289442394 1.006402864 0 0.10056307 0 0 0 0.014324127 6.92E-13 12.15962733 0.71696047 GPQGPSGPPGVPGS(ph)PGSSRPGLR ddPTM_HeLa_CUDC101_4h_R1 1 GPQGPSGPPGVPGSPGSSRPGLR 23 1 Q01955-5;Q01955-4;Q01955-3;Q01955-2;Q01955 Q01955-5 COL4A3 Collagen alpha-3(IV) chain;Tumstatin 1 0 GPQGPSGPPGVPGS(0.48)PGS(0.48)S(0.041)RPGLR 83.647 0.00023968 9413400 798.04 722.42 622.06 693.76 802.84 790.99 663.82 879.83 866.03 698.36 TRUE FALSE FALSE 704.494961 744.6769039 655.6904452 722.0545315 743.6160927 775.9031836 689.4237598 979.9862908 830.3318768 694.2061237 1.014821012 1.072702874 0.944518383 1.040115474 1.071174781 1.117684153 0.993111032 1.411664717 1.196088379 1 9.439220281 KGPELPLVPVK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 KGPELPLVPVKR 12 2 Q96DI7;Q96DI7-2 Q96DI7 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein 0 1 KGPELPLVPVK(1)R 124.48 0.00055232 0 5278.9 5114.8 5481.8 5769.2 6826.4 5993.9 6416.2 9469.3 4719.1 4538.1 FALSE TRUE FALSE 4660.115344 5272.380925 5778.16269 6004.492913 6322.830072 5879.576344 6663.674983 10547.24684 4524.576701 4511.107179 1.033031395 1.168755411 1.280874619 1.331046387 1.401613799 1.303355498 1.477170619 2.338061681 1.002985857 1 12.13926585 -1 0.43519706 1.033372429 24.84740661 0.870819975 0.133323205 17.64276187 0.196123722 0.030888789 373.1403941 0.1 1 23.81403418 up GRS(ph)IDQDYER ddPTM_HeLa_CUDC101_4h_R1 4 GRSIDQDYER 10 1 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;A0A3B3IRI3;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3ISZ5;Q9UDY2-5;A0A3B3ISF1;A0A3B3IRV6 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 GRS(1)IDQDYER;GRS(1)IDQDYER;GRS(1)IDQDYER;GRS(1)IDQDYER ;;; 75.102 0.030556 295075000 4626.5 4263.73 3685.67 4206.04 4107.22 3891.95 4265.63 4361.43 3824.67 3739.2 TRUE FALSE FALSE 4084.188683 4395.090468 3884.928469 4377.580491 3804.238563 3817.717538 4430.156778 4857.917562 3667.015484 3716.959072 1.098798401 1.182442524 1.045190004 1.17773169 1.023481424 1.027107769 1.191876664 1.306960197 0.98656332 1 11.85990709 GS(ph)LEEQLLQELSSLILR ddPTM_HeLa_CUDC101_4h_R1 1 GSLEEQLLQELSSLILR 17 0 G5E9Y3;Q8WWN8-2;Q8WWN8 G5E9Y3 ARAP3 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3" 1 0 GS(1)LEEQLLQELSSLILR 144.3 1.33E-05 0 348.53 205.69 407.21 396.68 277.61 207.48 311.71 222.92 165.14 318.27 TRUE FALSE FALSE 307.6758417 212.0270651 429.2250043 412.858325 257.1312634 203.5226647 323.7327591 248.2963117 158.3328593 316.3769159 0.972497759 0.670172362 1.356688756 1.304957171 0.81273712 0.643291765 1.023250253 0.784811721 0.500456422 1 8.305500529 GS(ph)PALLPSTPTMPLFPHVLDLLAPLDSSR ddPTM_HeLa_CUDC101_4h_R1 1 GSPALLPSTPTMPLFPHVLDLLAPLDSSR 29 0 Q9UGR2 Q9UGR2 ZC3H7B Zinc finger CCCH domain-containing protein 7B 1 0 GS(0.954)PALLPS(0.014)T(0.014)PT(0.017)MPLFPHVLDLLAPLDSSR 64.685 0.00063825 65783000 477.19 420.28 476.14 351.02 371.21 447 415.95 206.64 435.33 432.27 TRUE FALSE FALSE 421.2545116 433.2283286 501.8815686 365.3361128 343.8265779 438.4742198 431.9933308 230.1630623 417.3855131 429.6988388 0.980348266 1.008213869 1.167984466 0.850214336 0.800157103 1.020422166 1.005339768 0.535638083 0.971344289 1 8.747182068 GS(ph)PEEELPLPAFEK ddPTM_HeLa_CUDC101_4h_R1 1 GSPEEELPLPAFEK 14 0 Q5JTD0-4;Q5JTD0-2;Q5JTD0 Q5JTD0-4 TJAP1 Tight junction-associated protein 1 1 0 GS(1)PEEELPLPAFEK 212.39 7.15E-24 98311000 4650.8 3839.6 3316 4081.1 4588.1 4295.7 3875.6 3649.4 4204.2 4115.7 TRUE FALSE FALSE 4105.640274 3957.893525 3495.27299 4247.544898 4249.645004 4213.76668 4025.08319 4064.832945 4030.901097 4091.219633 1.003524778 0.967411647 0.854335211 1.038209942 1.038723262 1.029953671 0.983834541 0.99355041 0.985256588 1 11.99831527 GS(ph)PGGPEFLK ddPTM_HeLa_CUDC101_4h_R1 1 GSPGGPEFLK 10 0 Q4VC44-2;Q4VC44;Q4VC44-4;I3L188 Q4VC44-2 FLYWCH1 FLYWCH-type zinc finger-containing protein 1 1 0 GS(1)PGGPEFLK 110.93 0.0080317 14193000 2706.8 2156.5 2007.9 2264.3 1704.1 2223 2059.9 1753 2004.1 2194.8 TRUE FALSE FALSE 2389.513007 2222.939209 2116.453148 2356.647941 1578.391938 2180.599979 2139.351033 1952.554434 1921.49015 2181.745232 1.095230081 1.018881204 0.970073461 1.080166422 0.723453827 0.999475075 0.980568676 0.894950705 0.880712432 1 11.09126693 GS(ph)PQQIDHAK ddPTM_HeLa_CUDC101_4h_R1 2 GSPQQIDHAK 10 0 A0A087WTP3;Q92945;M0R3J3 A0A087WTP3 KHSRP Far upstream element-binding protein 2 1 0 GS(1)PQQIDHAK;GS(1)PQQIDHAK ; 86.699 0.021466 72145000 10290.7 5191 7337.8 7180.2 10663.5 7467.2 8655.5 5213.1 8394.7 8065 TRUE FALSE FALSE 9084.439746 5350.928557 7734.503664 7473.039591 9876.87485 7324.775601 8989.345534 5806.538232 8048.666913 8017.029021 1.133142929 0.667445327 0.964759345 0.932145758 1.231986915 0.913652125 1.121281401 0.724275566 1.003946336 1 12.96885198 KPAPAGEPVNSSK(ac)WK ddPTM_HeLa_CUDC101_4h_R1 2 KPAPAGEPVNSSKWK 15 2 Q8TEK3-1;Q8TEK3;H7C2S2 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 0 1 ; KPAPAGEPVNSSK(1)WK;KPAPAGEPVNSSK(1)WK 162.7 0.00021504 6049200 2139.3 2658.6 3243.5 4045.4 4390.3 3880.7 4448 7874.4 1598.8 1373.79 FALSE TRUE FALSE 1888.534497 2740.508315 3418.853421 4210.388898 4066.436316 3806.682113 4619.56085 8770.789867 1532.896787 1365.618636 1.382915001 2.006788896 2.503519893 3.083136673 2.97772468 2.787514766 3.382760551 6.422576286 1.122492581 1 10.41533894 -1 0.263724238 0.974477875 32.62433615 0.853386757 0.57021134 12.18963448 0.153947059 0.282871092 176.4426238 0.1 1 31.64985828 up GS(ph)T(ph)GMEILLS(ph)T(ph)LENT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 GSTGMEILLSTLENTK 16 0 J3KNS1;Q9UPW5-2;Q9UPW5;Q9UPW5-3 J3KNS1 AGTPBP1 Cytosolic carboxypeptidase 1 5 0 GS(1)T(1)GMEILLS(1)T(1)LENT(1)K 41.348 0.0033025 0 0 0 0 0 61.561 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 57.01976768 0 0 0 0 0 0 GSS(ph)LSGTDDGAQEVVK ddPTM_HeLa_CUDC101_4h_R1 2 GSSLSGTDDGAQEVVK 16 0 Q9Y6D5 Q9Y6D5 ARFGEF2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 1 0 GS(0.003)S(0.993)LS(0.005)GTDDGAQEVVK;GS(0.004)S(0.994)LS(0.002)GTDDGAQEVVK ; 257.37 9.28E-70 76966000 11630 6842 6946.2 7084.7 7534 8755.1 7497.6 6022.6 6876.5 7255.6 TRUE FALSE FALSE 10266.74903 7052.79391 7321.732583 7373.644689 6978.23183 8588.111054 7786.784944 6708.18844 6593.047759 7212.443369 1.423477247 0.977864719 1.01515287 1.022350445 0.967526741 1.190735319 1.079632039 0.930085423 0.914121252 1 12.81627237 GSSSSS(ph)PEHSASSDSTK ddPTM_HeLa_CUDC101_4h_R1 1 GSSSSSPEHSASSDSTK 17 0 Q9P275;A0A075B784 Q9P275 USP36 Ubiquitin carboxyl-terminal hydrolase 36;Ubiquitin carboxyl-terminal hydrolase 1 0 GSS(0.002)S(0.011)S(0.131)S(0.856)PEHS(0.001)ASSDSTK 187 7.12E-24 0 1470.7 232.05 486.83 686.77 1416.5 1186.5 1068.5 432.17 1491.1 1261 TRUE FALSE FALSE 1298.306775 239.1991855 513.1495024 714.7794491 1312.007617 1163.869489 1109.712403 481.3664859 1429.636227 1253.499516 1.035745733 0.190825112 0.409373515 0.570227144 1.046675807 0.928496162 0.885291449 0.384018087 1.140515978 1 10.29174572 GSYGS(ph)DAEEEEYRQQLSEHSK ddPTM_HeLa_CUDC101_4h_R1 2 GSYGSDAEEEEYRQQLSEHSK 21 1 Q9UDY2-7;A0A2R8YDH4;A0A1B0GTW1;A0A3B3ITE1;Q9UDY2-3;Q9UDY2;Q9UDY2-6;Q9UDY2-2;Q9UDY2-4;A0A3B3IU51;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 0 GS(0.009)Y(0.004)GS(0.966)DAEEEEY(0.02)RQQLSEHSK;GS(0.005)Y(0.001)GS(0.994)DAEEEEYRQQLSEHSK ; 95.51 0.00021692 80445000 7858.8 4623.9 4527.9 3690.2 8845.5 7350.9 7357.7 7126 7186.8 6502.6 TRUE FALSE FALSE 6937.603377 4766.356878 4772.69197 3840.702306 8192.985088 7210.69383 7641.488954 7937.195036 6890.557062 6463.922246 1.073280759 0.737378436 0.738358506 0.594175202 1.267494375 1.115529172 1.182175259 1.227922418 1.066002467 1 12.65819413 GT(ph)MLHCPLNFT(ph)GT(ph)PGPLK ddPTM_HeLa_CUDC101_4h_R1 1 GTMLHCPLNFTGTPGPLK 18 0 Q03989-5;Q03989 Q03989-5 ARID5A AT-rich interactive domain-containing protein 5A 3 0 GT(1)MLHCPLNFT(1)GT(1)PGPLK 42.191 0.037208 9697800 1702.3 1732.5 1649.1 1653.8 1876.3 1594.9 1934.4 1833.1 1606.5 2091.2 TRUE FALSE FALSE 1502.758975 1785.876271 1738.255334 1721.249112 1737.889087 1564.47994 2009.010456 2041.772694 1540.27939 2078.761449 0.722910738 0.859105922 0.8361976 0.82801666 0.836021414 0.752601959 0.966445889 0.982206349 0.740960147 1 11.02150849 GT(ph)S(ph)Y(ph)IEEDIQES(ph)ICK ddPTM_HeLa_CUDC101_4h_R1 2 GTSYIEEDIQESICK 15 0 H0YF13 H0YF13 CEP126 4 0 GT(1)S(1)Y(1)IEEDIQES(1)ICK;GT(1)S(1)Y(1)IEEDIQES(1)ICK ; 69.975 0.014983 12995100 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 GTEAPAVVT(ph)EEEDDDEETAPPVIAPRPDHTK ddPTM_HeLa_CUDC101_4h_R1 4 GTEAPAVVTEEEDDDEETAPPVIAPRPDHTK 31 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 0 GTEAPAVVT(1)EEEDDDEETAPPVIAPRPDHTK;GTEAPAVVT(1)EEEDDDEETAPPVIAPRPDHTK;GTEAPAVVT(1)EEEDDDEETAPPVIAPRPDHTK;GTEAPAVVT(1)EEEDDDEETAPPVIAPRPDHTK ;;; 142.23 4.96E-17 289013000 14118.5 11587.2 10696.8 11041.1 11651.9 11096.1 11118.5 11271 12344.4 10679.6 TRUE FALSE FALSE 12463.55083 11944.1879 11275.10136 11491.40378 10792.36255 10884.46038 11547.34427 12554.04508 11835.55861 10616.07726 1.17402601 1.125103708 1.06207793 1.082452915 1.016605501 1.025280818 1.087722327 1.182550274 1.114871182 1 13.37396316 GTPSQS(ph)PVVGR ddPTM_HeLa_CUDC101_4h_R1 6 GTPSQSPVVGR 11 0 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 1 0 GTPS(0.012)QS(0.988)PVVGR;GT(0.041)PS(0.062)QS(0.897)PVVGR;GTPS(0.006)QS(0.994)PVVGR;GTPS(0.012)QS(0.988)PVVGR;GTPS(0.003)QS(0.997)PVVGR;GTPS(0.003)QS(0.997)PVVGR ;;;;; 144.51 0.0011353 1909994000 13200.11 12587.61 12366.8 12111.3 14690.5 13495.5 14167.8 18986.4 12457.3 13298.5 TRUE FALSE FALSE 11652.81312 12975.41934 13035.38662 12605.25116 13606.81108 13238.09582 14714.25679 21147.73503 11943.80482 13219.39993 0.881493349 0.981543747 0.986080055 0.953541857 1.029306259 1.001414277 1.113080538 1.599749999 0.903505824 1 13.69036907 GTTATSAQANSTPTSVASVVTSAES(ph)PASR ddPTM_HeLa_CUDC101_4h_R1 1 GTTATSAQANSTPTSVASVVTSAESPASR 29 0 Q86YP4-2;Q86YP4;Q86YP4-3 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 0 GTTATSAQANSTPTSVASVVT(0.029)S(0.019)AES(0.868)PAS(0.084)R 135.08 1.70E-16 19120000 1914.3 1855.9 1515.7 1563.7 2207.8 1811.8 1763.3 1519.6 1730 1800.9 TRUE FALSE FALSE 1689.908656 1913.078079 1597.643327 1627.474445 2044.934993 1777.242934 1831.311072 1692.585122 1658.688668 1790.188167 0.943983815 1.068646366 0.892444357 0.909108034 1.142301704 0.992768786 1.022971275 0.94547889 0.926544315 1 10.80589552 GVAPADS(ph)PEAPRR ddPTM_HeLa_CUDC101_4h_R1 4 GVAPADSPEAPRR 13 1 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 0 GVAPADS(1)PEAPRR;GVAPADS(1)PEAPRR;GVAPADS(1)PEAPRR;GVAPADS(1)PEAPRR ;;; 113.43 0.0019826 186850000 8270.2 7752.7 7938.6 7643.2 7712.5 7753.1 7602.5 7505.4 7812.6 8470.1 TRUE FALSE FALSE 7300.779693 7991.551498 8367.784729 7954.922733 7143.56424 7605.222535 7895.730972 8359.784398 7490.561321 8419.719469 0.867104863 0.949147003 0.993831773 0.944796648 0.848432572 0.903263174 0.937766514 0.992881583 0.889644999 1 13.03955645 GYRDDRS(ph)PAREPGDVSAR ddPTM_HeLa_CUDC101_4h_R1 1 GYRDDRSPAREPGDVSAR 18 3 A0A1W2PR91;A0A1W2PQT1;C9J366;P0DPB3-2;P0DPB3;B3KU38-2;B3KU38 A0A1W2PR91 IQCJ-SCHIP1 1 0 GYRDDRS(1)PAREPGDVSAR 75.877 0.0086564 51605000 1415.3 1411.2 1152.8 1430.9 1527.6 1131.8 1406.6 1320.8 1390.9 1460.2 TRUE FALSE FALSE 1249.400679 1454.677399 1215.123855 1489.258287 1414.911991 1110.212801 1460.853033 1471.154533 1333.566513 1451.514665 0.860756497 1.00217892 0.837141976 1.026002921 0.974783118 0.764865025 1.006433533 1.013530602 0.918741329 1 10.50334343 GYT(ph)SDSEVYTDHGRPGK ddPTM_HeLa_CUDC101_4h_R1 4 GYTSDSEVYTDHGRPGK 17 1 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 GYT(0.896)S(0.099)DS(0.005)EVYTDHGRPGK;GYT(0.667)S(0.333)DSEVYTDHGRPGK;GYT(0.856)S(0.143)DS(0.001)EVYTDHGRPGK;GY(0.001)T(0.456)S(0.456)DS(0.077)EVY(0.001)T(0.011)DHGRPGK ;;; 305.14 8.73E-123 1344661000 20440 14821.1 16133.5 16528.2 18181.2 17813.5 16307.1 14228.8 16084.7 16505.2 TRUE FALSE FALSE 18044.05419 15277.72052 17005.72581 17202.29144 16840.0091 17473.73717 16936.07031 15848.54908 15421.68186 16407.02634 1.099776024 0.931169379 1.036490432 1.048471008 1.026390081 1.065015488 1.032244964 0.965961092 0.93994375 1 14.00202616 GYTS(ph)DSEVYTDHGRPGK ddPTM_HeLa_CUDC101_4h_R1 3 GYTSDSEVYTDHGRPGK 17 1 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 0 GYT(0.433)S(0.549)DS(0.019)EVYTDHGRPGK;GYT(0.138)S(0.859)DS(0.003)EVYTDHGRPGK;GYT(0.414)S(0.586)DS(0.001)EVYTDHGRPGK ;; 121.26 0.00017123 70330000 10420.8 6808.4 7565.6 8295.5 9332.8 8450.4 8020.7 7154.2 8194.9 8405.1 TRUE FALSE FALSE 9199.289621 7018.158734 7974.619221 8633.826346 8644.337938 8289.222699 8330.061086 7968.60521 7857.102753 8355.106091 1.101038038 0.839984395 0.954460558 1.033359272 1.034617376 0.992114595 0.997002431 0.953740757 0.94039533 1 13.02844243 HDSIPAADTFEDLS(ph)DVEGGGSEPTQR ddPTM_HeLa_CUDC101_4h_R1 2 HDSIPAADTFEDLSDVEGGGSEPTQR 26 0 O95671;O95671-2;O95671-3 O95671 ASMTL N-acetylserotonin O-methyltransferase-like protein 1 0 HDSIPAADTFEDLS(0.999)DVEGGGS(0.001)EPTQR;HDSIPAADTFEDLS(0.996)DVEGGGS(0.003)EPTQR ; 126.52 1.50E-10 12159600 5874.3 5059.1 3906.1 4846.3 5016.6 5109.1 4763.3 4575.8 4919.7 5004.2 TRUE FALSE FALSE 5185.723459 5214.964874 4117.275581 5043.953061 4646.535412 5011.65243 4947.022077 5096.690576 4716.907884 4974.434796 1.042474909 1.048353248 0.827687114 1.013975108 0.934083087 1.007481781 0.99448928 1.024576818 0.948229915 1 12.2803169 VSQGVEDGPDTK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 VSQGVEDGPDTKR 13 1 A0A590UK93;A0A590UKC5;B3KNJ4;Q9UBE0-2;Q9UBE0-3;Q9UBE0;M0QYM8;M0R054;M0QX65 A0A590UK93 SAE1 "SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed" 0 1 ; VSQGVEDGPDTK(1)R;VSQGVEDGPDTK(1)R 184.87 3.03E-08 1647200 1199.62 1006.53 591.27 826.93 1164.22 1301.82 1085.16 1196.96 1024.62 1004.36 FALSE TRUE FALSE 1059.002362 1037.539996 623.2358447 860.6557797 1078.33781 1276.989952 1127.014985 1333.217088 982.3847299 998.3860221 1.060714332 1.03921727 0.62424336 0.862047105 1.080081037 1.279054318 1.128836903 1.33537235 0.98397284 1 9.963453926 -5.450103823 4.519853868 0.985474497 1.232975555 0.508783495 0.133639202 0.182999468 7.02488711 0.021006338 0.047726665 3.55E-06 5.450103823 0.247501058 VSQLLAVTGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 VSQLLAVTGKK 11 1 Q13951;J3KS23 Q13951 CBFB Core-binding factor subunit beta 0 1 VSQLLAVTGK(1)K 148.18 0.00013599 3907700 2106.3 2090.6 1690.5 2082.9 2035.5 2085.1 1914.1 2173.3 1452.7 1100.4 FALSE TRUE FALSE 1859.402707 2155.008908 1781.893543 2167.849665 1885.34522 2045.330192 1987.927478 2420.699687 1392.819091 1093.854772 1.6998625 1.97010514 1.629003767 1.981844136 1.723579097 1.869837061 1.817359607 2.212999156 1.273312625 1 10.09520549 -9.368898922 0.320994026 0.585396985 1.964740211 0.74759453 0.169083633 0.969694579 0.125116675 0.494936943 0.070941424 4.28E-10 9.368898922 1.379343225 HET(ph)T(ph)ASFLTDS(ph)LDK ddPTM_HeLa_CUDC101_4h_R1 1 HETTASFLTDSLDK 14 0 E7EMD6;O43572 E7EMD6 AKAP10 "A-kinase anchor protein 10, mitochondrial" 3 0 HET(0.939)T(0.946)AS(0.084)FLT(0.036)DS(0.995)LDK 52.93 0.033027 3920500 0 0 0 0 0 0 0 0 109.33 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 104.8233711 0 0 HIISATSLST(ph)SPTELGSR ddPTM_HeLa_CUDC101_4h_R1 1 HIISATSLSTSPTELGSR 18 0 Q5JSZ5;Q5JSZ5-5;A0A1W2PQP5 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 HIISATSLS(0.002)T(0.986)S(0.012)PTELGSR 262.24 6.45E-70 26719000 2067.8 1363 1278 1001 2273.5 2110.2 1747.2 1717.1 1741.8 1765.7 TRUE FALSE FALSE 1825.415619 1404.992414 1347.092546 1041.825107 2105.788434 2069.951451 1814.590089 1912.567723 1670.002267 1755.197538 1.040005799 0.800475379 0.767487714 0.593565729 1.19974441 1.179326774 1.033838101 1.089659529 0.951461149 1 10.77741769 HLFSS(ph)TENLAAGSWKEPAEGGGLSSDR ddPTM_HeLa_CUDC101_4h_R1 1 HLFSSTENLAAGSWKEPAEGGGLSSDR 27 1 Q6WKZ4;E7EX40;Q6WKZ4-2;Q6WKZ4-3 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 0 HLFS(0.199)S(0.569)T(0.232)ENLAAGSWKEPAEGGGLSSDR 64.415 0.00099915 51037000 625.51 556.71 383.74 422.46 785.87 403.56 406.1 588.47 377.87 564.08 TRUE FALSE FALSE 552.188666 573.8615752 404.4861452 439.6897448 727.8979358 395.8627654 421.763413 655.4590461 362.2940387 560.7248271 0.984776559 1.023428155 0.721363003 0.784145313 1.298137519 0.705984016 0.752175386 1.168949571 0.646117349 1 9.131149139 HNS(ph)TTSSTSSGGYR ddPTM_HeLa_CUDC101_4h_R1 1 HNSTTSSTSSGGYR 14 0 A0A0A0MRT6;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0 A0A0A0MRT6 ABI1 Abl interactor 1 1 0 HNS(0.945)T(0.054)T(0.001)SSTSSGGYR 92.269 0.012404 464080 0 0 0 0 124.8 0 114.84 0 0 0 TRUE FALSE FALSE 0 0 0 0 115.5937526 0 119.2694173 0 0 0 0 HQQQLLASPGSS(ph)TVDNK ddPTM_HeLa_CUDC101_4h_R1 1 HQQQLLASPGSSTVDNK 17 0 F2Z2X4;Q9C0E2 F2Z2X4 XPO4 Exportin-4 1 0 HQQQLLAS(0.12)PGS(0.209)S(0.37)T(0.301)VDNK 87.669 0.0081914 27412000 3048.7 2119.1 2367.3 2339.4 2710.8 2566.9 2598.5 2033.3 2450.8 2544.6 TRUE FALSE FALSE 2691.336008 2184.386959 2495.283399 2434.810844 2510.829685 2517.940659 2698.725015 2264.762653 2349.776987 2529.464606 1.063994333 0.863576804 0.986486782 0.962579527 0.992632859 0.995444116 1.066915508 0.895352577 0.928962193 1 11.30461634 HQS(ph)FGAAVLSR ddPTM_HeLa_CUDC101_4h_R1 2 HQSFGAAVLSR 11 0 Q5VV41 Q5VV41 ARHGEF16 Rho guanine nucleotide exchange factor 16 1 0 HQS(1)FGAAVLSR;HQS(1)FGAAVLSR ; 113.65 0.003812 37732000 9414.1 6620.5 7192.3 7416.4 8113.5 8540.3 7558.7 8398.7 7247.5 7672.1 TRUE FALSE FALSE 8310.593469 6824.469758 7581.137494 7718.872848 7514.983269 8377.408007 7850.241591 9354.774059 6948.754982 7626.466008 1.089704387 0.894840382 0.99405642 1.0121166 0.985382123 1.098465265 1.029341976 1.22661978 0.911136951 1 12.89679897 HS(ph)PQQPSNGSLR ddPTM_HeLa_CUDC101_4h_R1 1 HSPQQPSNGSLR 12 0 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2 G3V1L9 TJP1 Tight junction protein ZO-1 1 0 HS(1)PQQPSNGSLR 86.214 0.016958 9889300 1540.5 1134.1 1147 1279.5 1963.5 1611.1 1350.7 1309.6 1600 1404.3 TRUE FALSE FALSE 1359.924925 1169.040277 1209.010289 1331.68354 1818.656517 1580.370952 1402.796951 1458.67957 1534.047323 1395.947161 0.974195129 0.837453099 0.866085997 0.953964145 1.30281186 1.132113733 1.004906912 1.044938957 1.098929362 1 10.44702862 HSCSGSS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 2 HSCSGSSPPR 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 HSCSGS(0.04)S(0.96)PPR;HSCSGS(0.461)S(0.539)PPR ; 147.96 0.00040048 4474300 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 HSGPNS(ph)ADSANDGFVR ddPTM_HeLa_CUDC101_4h_R1 1 HSGPNSADSANDGFVR 16 0 P52597 P52597 HNRNPF "Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed" 1 0 HS(0.002)GPNS(0.983)ADS(0.015)ANDGFVR 103.67 0.00073525 0 577.41 203.45 311.11 397.53 255.83 539.22 292.64 444.71 391.51 400.83 TRUE FALSE FALSE 509.7268751 209.7180534 327.9295477 413.7429917 236.9579306 528.9352769 303.9272228 495.3339888 375.3717921 398.4458453 1.279287715 0.526340168 0.823021626 1.038392034 0.594705487 1.327496028 0.762781759 1.243165149 0.942089864 1 8.638239844 HSS(ph)TGDSADAGPPAAGSAR ddPTM_HeLa_CUDC101_4h_R1 3 HSSTGDSADAGPPAAGSAR 19 0 F5H1N7;Q6ZU35 F5H1N7 KIAA1211 Uncharacterized protein KIAA1211 1 0 HS(0.144)S(0.589)T(0.266)GDSADAGPPAAGSAR;HS(0.118)S(0.441)T(0.441)GDSADAGPPAAGSAR;HS(0.115)S(0.42)T(0.42)GDS(0.045)ADAGPPAAGSAR ;; 142.22 3.56E-05 24129400 2677.85 2107 2583.23 2135.6 2785.65 2847.51 2253.56 2062.81 2286.3 2601.29 TRUE FALSE FALSE 2363.956482 2171.914173 2722.887228 2222.698999 2580.158149 2793.198491 2340.480564 2297.631952 2192.057746 2585.817411 0.914200853 0.839933308 1.053008312 0.859573065 0.997811422 1.080199429 0.90512213 0.888551505 0.84772333 1 11.33640469 HT(ph)PYGNQTDYR ddPTM_HeLa_CUDC101_4h_R1 2 HTPYGNQTDYR 11 0 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 0 HT(1)PYGNQTDYR;HT(0.999)PY(0.001)GNQTDYR ; 93.243 0.028732 12093800 12255.4 11195.6 9891.3 11522.6 16650.6 15585.8 12199.1 7309.2 14386.9 14046.4 TRUE FALSE FALSE 10818.84059 11540.52317 10426.0536 11992.54143 15422.31841 15288.52683 12669.62337 8141.249783 13793.86589 13962.85139 0.774830319 0.826516221 0.74669946 0.858889141 1.104524999 1.094943032 0.907380808 0.583064988 0.987897494 1 13.76930597 HTNPSSSS(ph)PGTRT ddPTM_HeLa_CUDC101_4h_R1 1 HTNPSSSSPGTRT 13 1 Q8WUH2 Q8WUH2 TGFBRAP1 Transforming growth factor-beta receptor-associated protein 1 1 0 HTNPSSS(0.008)S(0.962)PGT(0.015)RT(0.015) 118.71 0.0012586 2582700 2331.9 705.17 1456.5 1330.8 2647.4 1945.3 2038.1 1021.9 2084.1 1961.4 TRUE FALSE FALSE 2058.558217 726.8954519 1535.242796 1385.075776 2452.106576 1908.196644 2116.7102 1138.228965 1998.192516 1949.733506 1.055815172 0.372817849 0.787411608 0.710392355 1.257662429 0.978696134 1.085640778 0.583786944 1.024854171 1 10.92906123 IAASS(ph)SFR ddPTM_HeLa_CUDC101_4h_R1 3 IAASSSFR 8 0 Q99961-3;Q99961-2;Q99961 Q99961-3 SH3GL1 Endophilin-A2 1 0 IAAS(0.129)S(0.742)S(0.129)FR;IAAS(0.138)S(0.822)S(0.04)FR;IAAS(0.113)S(0.69)S(0.197)FR ;; 93.598 0.024705 678234600 19284.9 13140 13127.6 13823.2 12262.5 11559 11361 16930.5 10726.7 11375.1 TRUE FALSE FALSE 17024.35326 13544.82783 13837.31776 14386.96984 11357.91981 11338.53133 11799.19758 18857.79968 10284.54089 11307.4404 1.505588591 1.197868602 1.223735636 1.272345406 1.004464265 1.0027496 1.043489699 1.667733724 0.909537484 1 13.46498477 VSSVFK(ac)DEATVR ddPTM_HeLa_CUDC101_4h_R1 2 VSSVFKDEATVR 12 1 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 0 1 ; VSSVFK(1)DEATVR;VSSVFK(1)DEATVR 138.42 4.33E-07 458600 202.2 65.972 208.15 0 428.094 316.867 215.81 178.15 154.85 416.9 FALSE TRUE FALSE 178.4984225 68.00451912 219.4032186 0 396.5143585 310.8232899 224.133864 198.4298759 148.4670175 414.4202603 0.430718378 0.164095547 0.529422038 0 0.95679289 0.750019533 0.54083713 0.478813164 0.358252315 1 8.694950725 -9.167807192 0.963606037 0.993882707 0.485015205 0 0.319137116 0.475424123 0.80852668 0.161569906 0.048394393 6.80E-10 9.167807192 -0.508867502 VSTAVLSITAK ddPTM_HeLa_CUDC101_4h_R1 2 VSTAVLSITAK 11 0 A0A087WW66;Q99460-2;Q99460 A0A087WW66 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 0 ; ; 192.12 2.81E-05 539440 748.54 490.08 261.63 430.48 432.63 458.57 487.63 242.23 274.571 145.15 FALSE FALSE TRUE 660.7972759 505.1787839 275.7745092 448.0368351 400.7157468 449.8235413 506.4380524 269.8044841 263.2530672 144.2866413 4.579753675 3.501216601 1.911296199 3.105185836 2.777220005 3.117568869 3.509944148 1.869920053 1.824514485 1 7.172793925 -6.128497014 19.93095554 2.743306423 2.919063118 0.007193464 1.003328959 37.3085738 5701.597435 0.21418547 0.355187811 7.44E-07 6.128497014 0.175756695 IAASSS(ph)FR ddPTM_HeLa_CUDC101_4h_R1 1 IAASSSFR 8 0 Q99961-3;Q99961-2;Q99961 Q99961-3 SH3GL1 Endophilin-A2 1 0 IAAS(0.012)S(0.075)S(0.914)FR 114.89 0.0093487 597360000 10362 7008.1 6484.7 6771.7 5971.8 5568.6 6326.4 7908.8 5667.4 4851.2 TRUE FALSE FALSE 9147.382068 7224.011254 6835.282497 7047.879196 5531.272212 5462.388233 6570.411367 8809.105824 5433.787373 4822.344847 1.896874313 1.498028757 1.417418852 1.461504604 1.147008849 1.132724516 1.362493056 1.826726645 1.126793613 1 12.23551911 VSVCAETYNPDEEEEDTDPR ddPTM_HeLa_CUDC101_4h_R1 1 VSVCAETYNPDEEEEDTDPR 20 0 P13861;P13861-2 P13861 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 0 0 200 1.56E-34 0 2234.1 2082.6 1585.4 1722.2 2319.5 1952.8 1462.3 1650.9 2410 1638.8 FALSE FALSE TRUE 1972.222185 2146.762438 1671.11152 1792.43876 2148.395106 1915.553594 1518.701401 1838.831783 2310.65878 1629.052345 1.210656116 1.317798317 1.025818185 1.100295375 1.318800536 1.175869885 0.932260652 1.128773909 1.418406712 1 10.66981725 -3.276614017 13.94194448 1.119710968 1.129371247 0 0.154357552 0 0 0.017628535 0 0.000528915 3.276614017 0.009660279 IDASKNEEDEGHSNS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 3 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 IDASKNEEDEGHSNS(0.607)S(0.393)PR;IDASKNEEDEGHSNS(0.5)S(0.5)PR;IDASKNEEDEGHS(0.074)NS(0.463)S(0.463)PR ;; 146.68 4.37E-05 101581200 4390.47 8560.9 3998.27 5271 4788.72 4381.54 4457.08 4248.37 4773.76 4718.4 TRUE FALSE FALSE 3875.825762 8824.651182 4214.42857 5485.974163 4435.465666 4297.969425 4628.991069 4731.987268 4576.983592 4690.334747 0.826343102 1.88145445 0.89853471 1.169633823 0.945660791 0.916345987 0.986921258 1.008880501 0.975833035 1 12.19547518 VSVHVIEGDHR ddPTM_HeLa_CUDC101_4h_R1 1 VSVHVIEGDHR 11 0 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 124.42 0.0024862 28662000 12559 9868.9 9491.5 10308 12986 11942 10740 9744.9 10469 9238.8 FALSE FALSE TRUE 11086.85306 10172.94911 10004.6392 10728.40479 12028.04865 11714.22625 11154.2454 10854.22003 10037.46339 9183.847207 1.207212273 1.10770017 1.089373437 1.168181978 1.309696076 1.27552495 1.214550411 1.181881599 1.092947559 1 13.16488292 -6.003451526 4.626701657 1.10131263 1.245577486 0.596372019 0.056505135 0.151723149 8.550942599 0.012530176 0.02226867 9.92E-07 6.003451526 0.144264855 IDASKNEEDEGHSNSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 IDASKNEEDEGHSNSSPR 18 1 Q14103-3;Q14103;D6RAF8;D6RD83 Q14103-3 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 0 IDASKNEEDEGHS(0.002)NS(0.054)S(0.944)PR;IDASKNEEDEGHS(0.051)NS(0.092)S(0.857)PR;IDASKNEEDEGHS(0.009)NS(0.247)S(0.744)PR ;; 130.47 3.59E-05 5584575000 14981.2 11882.3 12894.2 11725.3 15025.3 12137.6 12626.1 13691.7 13143.9 12137 TRUE FALSE FALSE 13225.12645 12248.37958 13591.29945 12203.50842 13916.91355 11906.0955 13113.09291 15250.30778 12602.10288 12064.80858 1.096173748 1.015215409 1.126524251 1.011496231 1.153513001 0.986844957 1.086887771 1.264032303 1.044534009 1 13.55851741 IDTHPS(ph)PSHSSTVK ddPTM_HeLa_CUDC101_4h_R1 2 IDTHPSPSHSSTVK 14 0 A0A0C4DG98;Q8NI27;Q8NI27-2;H0Y7U4;B7ZBA0;H0Y594;H7C477 A0A0C4DG98 THOC2 THO complex subunit 2 1 0 IDT(0.07)HPS(0.919)PS(0.011)HSSTVK;IDT(0.042)HPS(0.895)PS(0.063)HSSTVK ; 110.12 0.0022739 43332000 11688.3 7394 7203.3 7861.3 11853.7 10492 10639 7749.8 8737.4 9923 TRUE FALSE FALSE 10318.21519 7621.800376 7592.732187 8181.917793 10979.27617 10291.88258 11049.34979 8632.005906 8377.240674 9863.977555 1.046050149 0.772690361 0.769743457 0.829474494 1.113067838 1.043380576 1.120171831 0.875103969 0.849276129 1 13.2679538 IEPEPFENCLLRPGS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 2 IEPEPFENCLLRPGSPAR 18 1 A0A2R8Y5T7;A0A2R8Y430;P48637-2;P48637 A0A2R8Y5T7 GSS Glutathione synthetase 1 0 IEPEPFENCLLRPGS(1)PAR;IEPEPFENCLLRPGS(1)PAR ; 86.367 0.0037219 12127900 4033.3 2573.3 1654.85 2326.3 2556.4 2442.5 2353.4 2084.87 2194.1 1611.47 TRUE FALSE FALSE 3560.522688 2652.580323 1744.316197 2421.176569 2367.819465 2395.913382 2444.171426 2322.203173 2103.658269 1601.884905 2.222708184 1.655911929 1.08891481 1.511454763 1.478145813 1.49568385 1.525809638 1.449669178 1.313239336 1 10.64555478 IEVLPVDTGAGGYSGNSGS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 IEVLPVDTGAGGYSGNSGSPK 21 0 X6RAB3;Q92738;Q92738-2 X6RAB3 USP6NL USP6 N-terminal-like protein 1 0 IEVLPVDTGAGGYSGNS(0.001)GS(0.999)PK;IEVLPVDTGAGGYS(0.077)GNS(0.004)GS(0.919)PK ; 261.82 1.34E-72 33505200 9780.5 9876.8 7266.8 8251.7 8200.6 8313.6 7444.4 7705.3 8019.5 8936.3 TRUE FALSE FALSE 8634.044616 10181.0925 7659.665189 8588.239993 7595.658076 8155.031931 7731.533002 8582.440206 7688.932816 8883.14649 0.971957923 1.146113318 0.862269377 0.966801572 0.855063922 0.918034161 0.870359732 0.966148674 0.865564113 1 13.11685507 ILEPDDFLDDLDDEDY(ph)EEDTPKR ddPTM_HeLa_CUDC101_4h_R1 1 ILEPDDFLDDLDDEDYEEDTPKR 23 1 J3KMZ8;Q92785 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 0 ILEPDDFLDDLDDEDY(0.967)EEDT(0.033)PKR 84.499 0.00014968 0 495.92 738.7 461.2 470.99 564.78 704.45 504.65 315.64 687.63 580.66 TRUE FALSE FALSE 437.7890094 761.4584714 486.1338671 490.199008 523.1173046 691.0137899 524.1145195 351.5711817 659.2856004 577.2062085 0.758462059 1.319213931 0.842218708 0.849261496 0.906291888 1.197169711 0.908019546 0.60909113 1.142201159 1 9.172943007 IMAT(ph)PEQVGK ddPTM_HeLa_CUDC101_4h_R1 1 IMATPEQVGK 10 0 P12956;P12956-2;B1AHC9 P12956 XRCC6 X-ray repair cross-complementing protein 6 1 0 IMAT(1)PEQVGK 131.17 0.01039 66290000 6869.2 6580.8 6664.8 5696.7 6231.3 5906.5 6309.7 6225.5 5797.5 5912.4 TRUE FALSE FALSE 6064.002789 6783.546648 7025.119248 5929.036049 5771.629413 5793.843353 6553.067243 6934.185756 5558.524596 5877.232782 1.031778562 1.154207584 1.195310703 1.008814228 0.982031787 0.985811447 1.11499195 1.179838542 0.945772407 1 12.52092133 INHTVILDDPFDDPPDLLIPDRSPEPT(ph)REQLDSGR ddPTM_HeLa_CUDC101_4h_R1 1 INHTVILDDPFDDPPDLLIPDRSPEPTREQLDSGR 35 2 Q8WUA2 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 1 0 INHTVILDDPFDDPPDLLIPDRS(0.159)PEPT(0.545)REQLDS(0.296)GR 65.141 7.64E-05 8928200 341.71 226.96 199.48 214.82 521.13 254.12 318.29 270.71 337.43 233.45 TRUE FALSE FALSE 301.6552718 233.9523686 210.2644922 223.5812881 482.6872781 249.2730844 330.5665519 301.5265322 323.5209926 232.061429 1.299894054 1.008148444 0.906072556 0.963457344 2.07999787 1.074168531 1.424478653 1.299339289 1.394117902 1 7.858362942 IQEQES(ph)S(ph)GEEDSDLSPEER ddPTM_HeLa_CUDC101_4h_R1 1 IQEQESSGEEDSDLSPEER 19 0 P41236;Q6NXS1;E7EMN6 P41236 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3 2 0 IQEQES(0.977)S(0.852)GEEDS(0.161)DLS(0.009)PEER 106.54 0.004101 44070000 1888.3 1504.9 1593.1 1255.1 1823.2 1471.7 1418.9 1489 1403.2 1647.7 TRUE FALSE FALSE 1666.956336 1551.264185 1679.227805 1306.288403 1688.706168 1443.629775 1473.627448 1658.501741 1345.359502 1637.899407 1.017740363 0.947105896 1.025232562 0.797538846 1.031019464 0.881390987 0.89970571 1.01257851 0.821393241 1 10.67763104 IQY(ph)LQNY(ph)LKES(ph)VQIQK ddPTM_HeLa_CUDC101_4h_R1 1 IQYLQNYLKESVQIQK 16 1 A0A494C037;E7EUS2;Q8TBZ0-2;Q8TBZ0 A0A494C037 CCDC110 Coiled-coil domain-containing protein 110 3 0 IQY(1)LQNY(1)LKES(1)VQIQK 52.009 0.031121 31673000 4169.4 5190.9 4866.6 5351.9 3196.8 2910.8 3176.6 3813.7 4079.7 4225.4 TRUE FALSE FALSE 3680.669252 5350.825476 5129.703117 5570.173615 2960.978433 2855.28134 3299.122526 4247.836192 3911.533039 4200.267133 0.876294087 1.27392504 1.221280208 1.326147466 0.704950028 0.679785654 0.785455406 1.011325246 0.931258159 1 12.03626537 IRLSS(ph)SASR ddPTM_HeLa_CUDC101_4h_R1 1 IRLSSSASR 9 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 0 IRLS(0.099)S(0.718)S(0.182)AS(0.002)R 77.124 0.028159 7246100 756.13 808.79 702.19 589.34 960.29 940.61 726.47 384.96 685.23 745.94 TRUE FALSE FALSE 667.4975876 833.7078612 740.1525154 613.3758325 889.4513199 922.6694314 754.4901913 428.7822903 656.9845294 741.5031157 0.900195257 1.124348426 0.998178564 0.827206008 1.199524724 1.244323067 1.017514526 0.578260942 0.88601722 1 9.534308944 VTAYK(ac)AVQEK ddPTM_HeLa_CUDC101_4h_R1 1 VTAYKAVQEK 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 1 VTAYK(1)AVQEK 158.41 0.00050474 748110 647.56 562.43 223.09 435.63 548.03 445.41 484.82 538.28 320.41 189.86 FALSE TRUE FALSE 571.6539984 579.7578017 235.1509202 453.3968744 507.6029187 436.9145464 503.5196698 599.5556194 307.2025642 188.7307043 3.028940101 3.071878547 1.245960063 2.402348235 2.689561938 2.315015715 2.667926619 3.176778372 1.627729655 1 7.560185341 -6.007347105 21.49288879 2.025970145 2.663919694 0.208878346 0.656119704 99.8638636 292149.3028 0.131472886 0.230823244 9.83E-07 6.007347105 0.637949549 IRPLS(ph)DGNSPWSTILIK ddPTM_HeLa_CUDC101_4h_R1 2 IRPLSDGNSPWSTILIK 17 1 Q5TCX8;Q5TCX8-3 Q5TCX8 MLK4 Mitogen-activated protein kinase kinase kinase MLK4 1 0 IRPLS(0.999)DGNS(0.001)PWSTILIK;IRPLS(0.998)DGNS(0.002)PWSTILIK ; 118.54 0.00017871 38402000 7263.6 6083.1 5267 5846 5908.9 6449.7 5550.3 5642.5 6074.9 5758.3 TRUE FALSE FALSE 6412.171819 6270.513101 5551.749952 6084.425149 5473.012219 6326.682718 5764.37693 6284.819392 5824.490051 5724.049376 1.120216022 1.095468031 0.969899033 1.062958187 0.956143433 1.105280948 1.007045284 1.097967362 1.017547136 1 12.4828204 VTDK(ac)LTPIHDR ddPTM_HeLa_CUDC101_4h_R1 2 VTDKLTPIHDR 11 1 I3L3X7;A0A087X2I4;P28072 I3L3X7 PSMB6 Proteasome subunit beta type;Proteasome subunit beta type-6 0 1 ; VTDK(1)LTPIHDR;VTDK(1)LTPIHDR 96.64 0.014492 3673000 2175 1602.34 1244.84 1208.37 3564.3 2377.6 3286.3 3302.5 2321.8 1504.63 FALSE TRUE FALSE 1920.049797 1651.706196 1312.139816 1257.652552 3301.36869 2332.251241 3413.053692 3678.443251 2226.094421 1495.680394 1.283730003 1.104317609 0.877286231 0.84085648 2.207268815 1.559324606 2.281940517 2.459377863 1.488349002 1 10.54658621 -5.325666012 1.157941761 1.099403213 2.36092074 0.675915919 0.327536227 0.216514919 0.517960628 0.047217061 0.205300232 4.72E-06 5.325666012 1.261517527 IS(ph)LDPTEAS(ph)YEDGYSVS(ph)HQISARFPHR ddPTM_HeLa_CUDC101_4h_R1 1 ISLDPTEASYEDGYSVSHQISARFPHR 27 1 A0A2R8YFV7;A0A2R8Y5N2;A0A2R8Y5S3;Q92574-2;Q92574;A0A2R8Y5M3;A0A2R8YGX7;A0A2R8YD74;Q86WV8;A0A2R8Y7E9;A0A2R8Y6W1;Q59IT9 A0A2R8YFV7 TSC1 Hamartin 3 0 IS(0.962)LDPT(0.33)EAS(0.341)Y(0.341)EDGY(0.125)S(0.134)VS(0.625)HQIS(0.141)ARFPHR 42.806 0.030517 26403000 2239.2 1560.1 2187.6 2074.2 1910.1 2274.7 2104.9 1742.3 2244.4 2186.8 TRUE FALSE FALSE 1976.72437 1608.164832 2305.868273 2158.794841 1769.195728 2231.313887 2186.086698 1940.636389 2151.884882 2173.792816 0.909343501 0.739796737 1.06075807 0.99310055 0.813875046 1.026461156 1.005655498 0.892742112 0.989921793 1 11.08599873 ISHSLYSGIEGLDES(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 2 ISHSLYSGIEGLDESPSR 18 0 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-5;Q8TEW0-9;Q8TEW0-8;Q5VWU8;Q8TEW0-10;B1AP52;F5GZI3 Q5VWV2;F5GZI3 PARD3 Partitioning defective 3 homolog 1 0 ISHSLYSGIEGLDES(0.792)PS(0.207)R;ISHSLYSGIEGLDES(0.922)PS(0.077)R ; 69.084 0.012787 9952500 4622.8 3316.8 3211 3256.5 4414.7 4184.2 3619.8 3579.3 4270.2 3658.5 TRUE FALSE FALSE 4080.922392 3418.986677 3384.596373 3389.314146 4089.036376 4104.393356 3759.416899 3986.753044 4094.180549 3636.739079 1.122137801 0.940124271 0.930667914 0.931965168 1.124368916 1.12859165 1.033732917 1.096243903 1.125783417 1 11.82842971 VTEGLVDVILYHQPDDK ddPTM_HeLa_CUDC101_4h_R1 2 VTEGLVDVILYHQPDDK 17 0 O43390;B4DT28;O43390-3 O43390 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 0 ; ; 189.52 2.60E-11 38777000 7436.1 7388.9 7027.5 6676.6 7520.2 7093.8 6696.5 6628.4 6977.6 8301.7 FALSE FALSE TRUE 6564.45163 7616.543251 7407.427907 6948.900607 6965.449828 6958.497584 6954.786248 7382.950263 6689.980375 8252.321119 0.795467304 0.922957692 0.897617507 0.842054073 0.844059475 0.843217015 0.842767283 0.894651354 0.810678629 1 13.01058425 -9.481259822 1.167744403 1.001649515 0.854493267 0 0.067527518 0.235080375 0.563099382 0.02843764 0.006644547 3.30E-10 9.481259822 -0.147156248 ISNLS(ph)PEEEQGLWK ddPTM_HeLa_CUDC101_4h_R1 4 ISNLSPEEEQGLWK 14 0 F5GX09;Q5HYJ3-3;Q5HYJ3-2;Q5HYJ3 F5GX09 FAM76B Protein FAM76B 1 0 ISNLS(1)PEEEQGLWK;IS(0.007)NLS(0.993)PEEEQGLWK;IS(0.002)NLS(0.998)PEEEQGLWK;ISNLS(1)PEEEQGLWK ;;; 220.72 1.24E-32 274663000 13980.7 12977.6 12397.5 11757.8 13450.8 12370.2 12276.4 11918.1 11875 12457.2 TRUE FALSE FALSE 12341.90354 13377.42447 13067.74635 12237.33391 12458.56128 12134.25905 12749.90486 13274.80833 11385.50747 12383.10402 0.996672847 1.080296544 1.055288426 0.988228306 1.006093566 0.979904475 1.029621074 1.072009757 0.919438895 1 13.59608537 ISYT(ph)PPES(ph)PVPSYASSTPLHVPVPR ddPTM_HeLa_CUDC101_4h_R1 2 ISYTPPESPVPSYASSTPLHVPVPR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 2 0 IS(0.069)Y(0.017)T(0.914)PPES(0.999)PVPSYASSTPLHVPVPR;IS(0.045)Y(0.03)T(0.926)PPES(0.998)PVPS(0.001)YASSTPLHVPVPR ; 102.75 3.31E-06 54739000 3393.66 2303.08 2410.85 1945.91 3779.85 3390.24 3334.47 3276.71 3660.89 3139.63 TRUE FALSE FALSE 2995.860319 2374.035165 2541.187843 2025.272621 3501.017996 3325.576821 3463.081625 3649.717421 3509.986565 3120.955341 0.959917715 0.760675788 0.814233965 0.648927139 1.121777665 1.065563732 1.109622294 1.169423149 1.124651327 1 11.607772 VTFQGVGDEEDEDEIIVPK ddPTM_HeLa_CUDC101_4h_R1 2 VTFQGVGDEEDEDEIIVPK 19 0 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 0 0 ; ; 205.28 2.14E-17 24233000 4681.5 4699.1 4133.6 3945 4690.3 4593.6 3754.1 4108.4 4408.2 4636 FALSE FALSE TRUE 4132.741667 4843.873701 4357.074919 4105.894152 4344.305913 4505.984733 3898.896895 4576.083649 4226.49213 4608.424866 0.896779656 1.051090957 0.945458599 0.89095391 0.942687803 0.977771118 0.846036771 0.992982154 0.917122933 1 12.17005801 -6.51859053 24.96139557 0.959329906 0.92771017 0.080279395 0.055480209 433.9467062 2525978.022 0.009165325 0.013132119 3.03E-07 6.51859053 -0.031619735 VTFSEDDEIINPEDVDPSVGR ddPTM_HeLa_CUDC101_4h_R1 2 VTFSEDDEIINPEDVDPSVGR 21 0 A0A0A0MT09;Q12972-2;Q12972 A0A0A0MT09 PPP1R8 Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay 0 0 ; ; 217.01 3.84E-26 20382000 2370.76 1947.8 1994.07 2167.7 2256.7 2021.75 1973.79 1946.43 2287.13 2281.7 FALSE FALSE TRUE 2092.863107 2007.809409 2101.875456 2256.108176 2090.227737 1983.188487 2049.919741 2168.003723 2192.853533 2268.128347 0.92272693 0.885227422 0.926700404 0.994700401 0.921565016 0.874372251 0.903793537 0.955855839 0.966811925 1 11.14728657 -9.085844207 0.749347058 1.003014014 0.921911652 0.317688538 0.033819181 0.562395018 0.546225148 0.027040132 0.007073564 8.21E-10 9.085844207 -0.081102362 IVEYSPPS(ph)APR ddPTM_HeLa_CUDC101_4h_R1 1 IVEYSPPSAPR 11 0 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 1 0 IVEYS(0.169)PPS(0.831)APR 118.87 0.0044873 37079000 2634.1 2528.5 2543.8 2321.6 2259.4 2915.6 2152 2449.6 2804.2 2661 TRUE FALSE FALSE 2325.334791 2606.400088 2681.325523 2416.284883 2092.728563 2859.989788 2235.003361 2728.452562 2688.609689 2645.172254 0.879086338 0.985342291 1.013667643 0.913469767 0.791150202 1.08121117 0.844936793 1.031483889 1.016421401 1 11.36914596 VTGGAASK(ac)LSK ddPTM_HeLa_CUDC101_4h_R1 2 VTGGAASKLSK 11 1 F2Z388;P42766 F2Z388 RPL35 60S ribosomal protein L35 0 1 ; VTGGAASK(1)LSK;VTGGAASK(1)LSK 147.28 0.00013996 26252000 7521 5874.9 5501.8 7219.3 5840.7 5998.4 5815.8 6059.9 5504.6 3502 FALSE TRUE FALSE 6639.399781 6055.898706 5799.24395 7513.734258 5409.843197 5883.990514 6040.117354 6749.734521 5277.698058 3481.169948 1.907232304 1.739615932 1.665889352 2.158393405 1.55403019 1.690233629 1.735082585 1.938927034 1.516070211 1 11.76535653 -9.289306086 0.822441159 0.954237475 1.799216352 0.415881822 0.223928876 0.255703044 0.283395422 0.142031151 0.031076045 5.14E-10 9.289306086 0.844978877 KAS(ph)SPSPLTIGTPESQR ddPTM_HeLa_CUDC101_4h_R1 1 KASSPSPLTIGTPESQR 17 1 Q9NPI6;Q9NPI6-2 Q9NPI6 DCP1A mRNA-decapping enzyme 1A 1 0 KAS(0.445)S(0.445)PS(0.091)PLT(0.005)IGT(0.013)PES(0.001)QR 59.434 0.027829 14852000 1880.3 1544.9 1589.2 2035.5 2050.6 1834.7 1742.4 1566.7 1814.9 1820.6 TRUE FALSE FALSE 1659.894084 1592.496538 1675.116959 2118.516488 1899.331323 1799.706154 1809.604952 1745.046795 1740.089054 1809.77099 0.917184601 0.879943676 0.925596094 1.170599208 1.049487108 0.994438614 0.999908254 0.964236251 0.961496821 1 10.82159143 VTHAVVTVPAYFNDAQR ddPTM_HeLa_CUDC101_4h_R1 1 VTHAVVTVPAYFNDAQR 17 0 P11021 P11021 HSPA5 78 kDa glucose-regulated protein 0 0 91.616 0.011073 3271500 1537.2 1277.3 1477.4 1246.5 1503.3 1447.8 1363.4 1401.9 1199.4 1557.7 FALSE FALSE TRUE 1357.011746 1316.652099 1557.272713 1297.337658 1392.404554 1420.185627 1415.986795 1561.486629 1149.960224 1548.434731 0.876376459 0.850311655 1.005707688 0.837838129 0.899233611 0.917175002 0.914463339 1.008429092 0.742659798 1 10.59659486 -9.426452132 1.166502012 0.999797006 0.908675816 0 0.096381902 0.484030811 1.182234588 0.035259281 0.00895003 3.75E-10 9.426452132 -0.09112119 VTILCDK(ac)FSGHPK ddPTM_HeLa_CUDC101_4h_R1 1 VTILCDKFSGHPK 13 1 Q86U42-2;Q86U42;B4DEH8;G3V4T2;Q92843-2;A6NDY0-2;A6NDY0;A6NDY0-4 Q86U42-2 PABPN1;PABPN1L Polyadenylate-binding protein 2;Embryonic polyadenylate-binding protein 2 0 1 VTILCDK(1)FSGHPK 86.756 0.029827 418900 642.13 472.59 391.28 296.87 529.29 709.5 566.84 461.58 467.76 242.56 FALSE TRUE FALSE 566.8604948 487.1499377 412.4337804 308.9776418 490.2453312 695.9674696 588.7032087 514.1244014 448.4787348 241.1172423 2.350974527 2.020386153 1.710511353 1.281441505 2.033223864 2.886427627 2.441564125 2.132258964 1.860002754 1 7.913591012 -9.387582261 0.848154749 0.915593055 2.120288581 0.150440282 0.481999669 0.530624921 0.603418496 0.440410846 0.086056952 4.10E-10 9.387582261 1.204695525 KASS(ph)Y(ph)ST(ph)S(ph)LSGSQK ddPTM_HeLa_CUDC101_4h_R1 1 KASSYSTSLSGSQK 14 1 Q96LW1 Q96LW1 ZNF354B Zinc finger protein 354B 4 0 KAS(0.295)S(0.735)Y(0.841)S(0.475)T(0.731)S(0.75)LS(0.154)GS(0.019)QK 49.066 0.0032539 0 474.22 757.84 497.33 660.69 463.27 499.45 519.27 720.68 701.11 512.91 TRUE FALSE FALSE 418.6326505 781.1881521 524.2171641 687.6357939 429.0954951 489.9238234 539.2984178 802.7192981 672.209949 509.8591885 0.821075034 1.532164507 1.028160669 1.34867785 0.841596081 0.960900253 1.057739921 1.5743941 1.318422741 1 8.993955052 KDS(ph)LESDSSTAIIPHELIR ddPTM_HeLa_CUDC101_4h_R1 1 KDSLESDSSTAIIPHELIR 19 1 Q9UMX1-2;Q9UMX1-3;Q9UMX1 Q9UMX1-2 SUFU Suppressor of fused homolog 1 0 KDS(0.96)LES(0.031)DS(0.003)S(0.005)T(0.001)AIIPHELIR 70.986 0.0069855 9666600 1739.8 1450.3 1552.6 1260.9 1688.2 1384.1 1262.2 1334.6 1614.8 1360.1 TRUE FALSE FALSE 1535.863281 1494.982024 1636.538252 1312.324952 1563.664849 1357.700599 1310.883477 1486.525469 1548.237261 1352.010065 1.135985095 1.105747703 1.210448276 0.970647325 1.156548232 1.004208943 0.969581153 1.099492902 1.145137378 1 10.40089018 VTLTSEEEAR ddPTM_HeLa_CUDC101_4h_R1 2 VTLTSEEEAR 10 0 P00338-3;P00338;P00338-4 P00338-3 LDHA L-lactate dehydrogenase A chain 0 0 ; ; 120.45 0.026205 9464300 3252.6 2702.1 2674.3 2554.7 2708.9 2471.8 2688.5 2188.56 3065.7 2558.3 FALSE FALSE TRUE 2871.335159 2785.348498 2818.880747 2658.891708 2509.069844 2424.654533 2792.196346 2437.696824 2939.330548 2543.083118 1.129076411 1.095264437 1.108450104 1.045538657 0.986625182 0.9534311 1.097957171 0.958559635 1.155813795 1 11.3123629 -5.936513877 5.245839522 1.06919774 1.00349356 0.354384178 0.056442028 0.254064966 13.7877769 0.009130051 0.016712183 1.16E-06 5.936513877 -0.06570418 VTLVFEHVDQDLR ddPTM_HeLa_CUDC101_4h_R1 2 VTLVFEHVDQDLR 13 0 F8W1L8;F8VXD2;F8VYH9;F8VZZ0;F8VTV8;F8VWX7;F8VZ51;P11802 F8W1L8 CDK4 Cyclin-dependent kinase 4 0 0 ; ; 156.81 7.83E-05 16912400 8360.1 7629.7 7618.7 7013.6 8670.7 8005.9 7289.8 8174.7 8552.9 9195.7 FALSE FALSE TRUE 7380.141751 7864.762014 8030.589967 7299.644923 8031.079735 7853.200796 7570.970028 9105.274805 8200.345842 9141.003567 0.807366685 0.860382775 0.878523885 0.79856056 0.878577464 0.85911801 0.82824276 0.996091374 0.897094699 1 13.15813685 -9.424596146 1.119356657 1.001064627 0.856127134 0.163853617 0.060364772 0.313712066 0.694801591 0.035808705 0.008746599 3.76E-10 9.424596146 -0.144937493 KECSEAMEVET(ph)SVISIDSPQK ddPTM_HeLa_CUDC101_4h_R1 1 KECSEAMEVETSVISIDSPQK 21 1 Q12888;Q12888-3;Q12888-2;A6NNK5;C9JXV0 Q12888 TP53BP1 Tumor suppressor p53-binding protein 1 1 0 KECSEAMEVET(0.762)S(0.027)VIS(0.047)IDS(0.164)PQK 99.078 0.00020666 10737000 3788.6 3332.9 3227.9 2824.4 2819.7 3326.2 2908.2 2577.4 3670.5 2791.3 TRUE FALSE FALSE 3344.506051 3435.582699 3402.410038 2939.59124 2611.696349 3262.758277 3020.370248 2870.800798 3519.200436 2774.697223 1.205358921 1.238182916 1.226227499 1.059427751 0.941254536 1.175897049 1.08854048 1.034635698 1.268318722 1 11.43811464 KETWDTAEEDS(ph)GTDSEYDESGK ddPTM_HeLa_CUDC101_4h_R1 1 KETWDTAEEDSGTDSEYDESGK 22 1 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 0 KETWDTAEEDS(0.998)GT(0.002)DSEYDESGK 107.92 1.16E-05 14495000 2934.7 2844.6 2721 3101.7 3504.5 3150.2 2685.7 2427.2 3957.5 3170.6 TRUE FALSE FALSE 2590.698915 2932.238754 2868.105491 3228.200733 3245.980017 3090.115184 2789.288349 2703.502637 3794.370175 3151.74113 0.821989754 0.930355202 0.910006683 1.024259481 1.02990058 0.980447015 0.88499919 0.857780676 1.203896519 1 11.62193333 KFSGFSAKPNNSGEAPS(ph)SPTPK ddPTM_HeLa_CUDC101_4h_R1 1 KFSGFSAKPNNSGEAPSSPTPK 22 2 P49916-4;P49916-2;P49916-3;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 0 KFSGFSAKPNNS(0.001)GEAPS(0.753)S(0.194)PT(0.052)PK 81.38 0.00075718 42023000 7047.4 6028.7 6622.1 5935.4 7092 6206.5 5968.4 5980.5 6539.1 6252.7 TRUE FALSE FALSE 6221.314455 6214.437101 6980.110757 6177.471267 6568.837289 6088.121353 6198.603187 6661.295946 6269.55553 6215.508662 1.000934082 0.999827599 1.123015209 0.993880244 1.056846293 0.979504926 0.997280114 1.07172177 1.008695486 1 12.60165675 KIMLS(ph)DEMET(ph)EK ddPTM_HeLa_CUDC101_4h_R1 2 KIMLSDEMETEK 12 1 H0YMX9;H0YNN2;H0YLX5;Q96M60-2;Q96M60 H0YMX9 FAM227B Protein FAM227B 2 0 KIMLS(1)DEMET(1)EK;KIMLS(1)DEMET(1)EK ; 85.976 0.0020369 8553100 3447.5 2586.1 2926.7 2706.8 3042.9 2785.7 2649.2 3051.1 3194 2980.2 TRUE FALSE FALSE 3043.389276 2665.774676 3084.926255 2817.195004 2818.431329 2732.567414 2751.380531 3398.424891 3062.341968 2962.473638 1.027313539 0.89984756 1.041334585 0.950960362 0.951377691 0.922393833 0.928744309 1.147157851 1.033711129 1 11.5325866 VTPDIEESLLEPENEK ddPTM_HeLa_CUDC101_4h_R1 2 VTPDIEESLLEPENEK 16 0 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 0 0 ; ; 201.48 7.75E-16 17236600 3894.7 3579.7 3369 2963.85 3962.5 3740.7 3287.3 3817.2 4004.6 4056.4 FALSE FALSE TRUE 3438.16917 3689.986314 3551.138331 3084.728614 3670.194269 3669.35238 3414.092262 4251.734618 3839.528693 4032.272352 0.852662933 0.915113363 0.880679185 0.765009986 0.910204954 0.909996166 0.846691881 1.054426449 0.952199742 1 11.97737737 -9.385858038 1.037195737 1.001969003 0.885037931 0.170519998 0.070503687 0.558921956 1.046374971 0.049168179 0.01178501 4.11E-10 9.385858038 -0.116931072 KLTS(ph)DEEGEPSGK ddPTM_HeLa_CUDC101_4h_R1 5 KLTSDEEGEPSGK 13 1 Q8WVC0;Q8WVC0-2 Q8WVC0 LEO1 RNA polymerase-associated protein LEO1 1 0 KLT(0.086)S(0.913)DEEGEPS(0.001)GK;KLT(0.258)S(0.742)DEEGEPSGK;KLT(0.081)S(0.918)DEEGEPS(0.001)GK;KLT(0.008)S(0.903)DEEGEPS(0.089)GK;KLT(0.013)S(0.577)DEEGEPS(0.41)GK ;;;; 190.82 3.51E-11 1094976400 28611.1 24918.7 25651.7 25560.3 26678.1 25576.6 25505.5 25471.2 25873.4 27234.2 TRUE FALSE FALSE 25257.35023 25686.41561 27038.50849 26602.75952 24710.10971 25088.76897 26489.25568 28370.73845 24806.8875 27072.20977 0.932962268 0.948811192 0.998755134 0.98265933 0.912748162 0.926735172 0.978466697 1.047965375 0.916322964 1 14.72452503 KNEALPSAHGTPAS(ph)AS(ph)ALPEPK ddPTM_HeLa_CUDC101_4h_R1 1 KNEALPSAHGTPASASALPEPK 22 1 O95696-2;O95696 O95696-2 BRD1 Bromodomain-containing protein 1 2 0 KNEALPSAHGT(0.018)PAS(0.991)AS(0.991)ALPEPK 59.372 0.0014481 0 2464.4 2170.3 2622.3 2292.2 2756.9 2369 2781.7 1897.4 2631.4 2703.4 TRUE FALSE FALSE 2175.526768 2237.164371 2764.06947 2385.685824 2553.52898 2323.815272 2888.991101 2113.392346 2522.932578 2687.320057 0.809552536 0.832488994 1.028559834 0.887756491 0.95021394 0.864733349 1.075045413 0.786431204 0.93882847 1 11.39195244 KNPDLGFSDY(ph)AAAQLR ddPTM_HeLa_CUDC101_4h_R1 2 KNPDLGFSDYAAAQLR 16 1 O95926-2;O95926 O95926-2 SYF2 Pre-mRNA-splicing factor SYF2 1 0 KNPDLGFSDY(1)AAAQLR;KNPDLGFSDY(1)AAAQLR ; 73.386 0.027839 132286000 3452.1 3721.5 3341.5 3495.4 4104 3750.5 3572.6 3782.6 4162.4 3634.4 TRUE FALSE FALSE 3047.450071 3836.155004 3522.151597 3637.95752 3801.256096 3678.965461 3710.396379 4213.195894 3990.82411 3612.782427 0.843518848 1.061828405 0.974913842 1.006968339 1.052168563 1.018319131 1.027019051 1.166191427 1.104640036 1 11.81889466 KPLSLAGDEETECQS(ph)SPK ddPTM_HeLa_CUDC101_4h_R1 3 KPLSLAGDEETECQSSPK 18 1 F5H1K3;Q86TN4-2;Q86TN4;Q86TN4-4 F5H1K3 TRPT1 tRNA 2-phosphotransferase 1 1 0 KPLSLAGDEETECQS(0.5)S(0.5)PK;KPLSLAGDEETECQS(0.5)S(0.5)PK;KPLSLAGDEETECQS(0.5)S(0.5)PK ;; 147.08 3.81E-05 86595000 14404.6 13782.2 14135.4 13689.3 12814.7 12694.4 11725 10606.1 13840.5 12616.8 TRUE FALSE FALSE 12716.11462 14206.81325 14899.60248 14247.60882 11869.38511 12452.27547 12177.23718 11813.45555 13269.98873 12541.75471 1.013902354 1.13276121 1.187999831 1.136013991 0.946389511 0.992865493 0.970935683 0.941930043 1.058064763 1 13.61445159 KPPAPPS(ph)PVQS(ph)QSPSTNWSPAVPVKK ddPTM_HeLa_CUDC101_4h_R1 2 KPPAPPSPVQSQSPSTNWSPAVPVKK 26 2 A9Z1X7;Q8IYB3;Q8IYB3-2 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 0 KPPAPPS(0.747)PVQS(0.351)QS(0.351)PS(0.271)T(0.271)NWS(0.008)PAVPVKK;KPPAPPS(0.759)PVQS(0.617)QS(0.204)PS(0.204)T(0.204)NWS(0.012)PAVPVKK ; 48.852 0.018739 816070000 5529.6 9226.2 4639.4 5247.4 5544.9 5387.2 4828.5 5220.6 5604 5767.3 TRUE FALSE FALSE 4881.42867 9510.448286 4890.219997 5461.411653 5135.863774 5284.448136 5014.736862 5814.892002 5373.000748 5732.995843 0.851462098 1.65889677 0.85299556 0.952627876 0.895842927 0.921760329 0.874714896 1.014285055 0.937206462 1 12.48507352 KPSKYPLCSADAAVS(ph)TTPPGS(ph)PPPPPPLPEPPVLK ddPTM_HeLa_CUDC101_4h_R1 1 KPSKYPLCSADAAVSTTPPGSPPPPPPLPEPPVLK 35 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 2 0 KPS(0.001)KY(0.001)PLCS(0.001)ADAAVS(0.389)T(0.389)T(0.389)PPGS(0.832)PPPPPPLPEPPVLK 74.769 1.07E-06 149360000 1317 1379.1 1128.8 1313.3 1337.3 1198 1247.8 1133.1 1524 1308.2 TRUE FALSE FALSE 1162.623256 1421.588436 1189.826342 1366.862051 1238.650043 1175.150146 1295.928064 1262.087524 1461.180075 1300.418768 0.894037586 1.093177422 0.914956298 1.051093758 0.952500897 0.903670552 0.996546725 0.970523923 1.123622721 1 10.34476057 KQQPQLPRPPTTGGSEGAGAAPCPPNPANSWVPGLS(ph)PGGSR ddPTM_HeLa_CUDC101_4h_R1 1 KQQPQLPRPPTTGGSEGAGAAPCPPNPANSWVPGLSPGGSR 41 2 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 0 KQQPQLPRPPTTGGSEGAGAAPCPPNPANS(0.023)WVPGLS(0.885)PGGS(0.092)R 56.583 8.74E-05 8709200 981.07 564.14 496.72 621.74 853.64 670.33 505.42 678.25 801.68 553.76 TRUE FALSE FALSE 866.0704618 581.5204847 523.5741857 647.0972446 790.6686779 657.5445721 524.9142187 755.4592384 768.6344111 550.4662109 1.573339916 1.056414496 0.951146819 1.175543988 1.436361873 1.194523041 0.95358118 1.372398929 1.3963335 1 9.1045102 KRPASPS(ph)HNGSSGGGYGASK ddPTM_HeLa_CUDC101_4h_R1 1 KRPASPSHNGSSGGGYGASK 20 2 K7ELX9;K7EQ79;K7ENM4;K7ENP7;Q6PI98;Q6PI98-3;Q6PI98-4 K7ELX9 INO80C INO80 complex subunit C 1 0 KRPAS(0.423)PS(0.561)HNGS(0.012)S(0.004)GGGYGASK 55.453 0.014459 7945500 4528.7 2123.6 1900 1778.9 4879.8 3889.5 4109 3228.6 4634.6 3622.6 TRUE FALSE FALSE 3997.852651 2189.025599 2002.719747 1851.451231 4519.826876 3815.314268 4267.485506 3596.130774 4443.559826 3601.052614 1.110190014 0.607884925 0.556148427 0.514141677 1.255140471 1.059499729 1.185066136 0.998633222 1.233961373 1 11.81420296 KS(ph)PSSDSWTCADTSTER ddPTM_HeLa_CUDC101_4h_R1 1 KSPSSDSWTCADTSTER 17 1 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHH7;Q8N6T3-4;H0YIQ0 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 0 KS(0.963)PS(0.029)S(0.007)DSWTCADTSTER 54.805 0.035237 13935000 1526.2 1303.3 1760.8 1029.4 1301.9 1270 1098.4 1250.3 1248.3 1235.8 TRUE FALSE FALSE 1347.30115 1343.453128 1855.994174 1071.383381 1205.861431 1245.776866 1140.765656 1392.629098 1196.844546 1228.449407 1.0967494 1.093616978 1.51084299 0.872142862 0.981612612 1.014105147 0.928622416 1.133647907 0.974272558 1 10.26262273 KS(ph)SS(ph)QPS(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 KSSSQPSK 8 1 A0A494C1D7;Q03001-13 A0A494C1D7 DST Dystonin 3 0 KS(0.999)S(0.1)S(0.901)QPS(1)K 62.546 0.0025415 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 KSSS(ph)LESLQTAVAEVR ddPTM_HeLa_CUDC101_4h_R1 1 KSSSLESLQTAVAEVR 16 1 R4GN62;A0A087WZG6;A0A087X1S9;Q8TEW8-5;Q8TEW8-2;Q8TEW8 R4GN62 PARD3B Partitioning defective 3 homolog B 1 0 KS(0.103)S(0.103)S(0.784)LES(0.005)LQT(0.004)AVAEVR 70.897 0.016509 7053600 816.12 1013.8 950.29 753.46 803.77 854.47 734.3 794.1 882.71 953.91 TRUE FALSE FALSE 720.4556508 1045.033976 1001.665552 784.1893555 744.4774884 838.1724084 762.622197 884.4971341 846.3243202 948.2361009 0.759785089 1.10208204 1.056346147 0.826997996 0.785118271 0.883927966 0.804253494 0.932781544 0.892524888 1 9.88910251 KT(ph)QET(ph)LS(ph)QAGQK ddPTM_HeLa_CUDC101_4h_R1 1 KTQETLSQAGQK 12 1 O43399-2;O43399-4;O43399;O43399-3;O43399-5;O43399-7;A0A087WYR3;O43399-6 O43399-2 TPD52L2 Tumor protein D54 3 0 KT(1)QET(1)LS(1)QAGQK 71.558 0.0026164 0 1056.2 1132.2 1037.2 820.88 1036.4 995.78 959.88 921.03 1030.4 998.37 TRUE FALSE FALSE 932.3938371 1167.08174 1093.274169 854.3590345 959.9468368 976.7871556 996.9028931 1025.876332 987.9264759 992.4316508 0.939504334 1.175981982 1.10161155 0.860874433 0.967267455 0.984236199 1.00450534 1.033699733 0.995460468 1 9.954823936 KTAVQYIES(ph)SDSEEIETSELPQK ddPTM_HeLa_CUDC101_4h_R1 1 KTAVQYIESSDSEEIETSELPQK 23 1 A0A0C4DGA6;Q14527-2;Q14527 A0A0C4DGA6 HLTF Helicase-like transcription factor 1 0 KTAVQYIES(0.485)S(0.485)DS(0.021)EEIET(0.004)S(0.004)ELPQK 63.225 0.0028195 0 1244.3 1420 932.46 960.64 1355.4 1006.2 1024.4 954.51 1100.1 1166.5 TRUE FALSE FALSE 1098.44504 1463.748517 982.8716081 999.8190514 1255.414842 987.0084114 1063.911451 1063.16756 1054.753412 1159.561606 0.947293386 1.262329236 0.847623449 0.862238838 1.082663341 0.851191007 0.917511795 0.916870268 0.90961395 1 10.17936376 KTEAPAAPAAQET(ph)KSDGAPASDSKPGSSEAAPSSK ddPTM_HeLa_CUDC101_4h_R1 1 KTEAPAAPAAQETKSDGAPASDSKPGSSEAAPSSK 35 3 P80723;P80723-2 P80723 BASP1 Brain acid soluble protein 1 1 0 KTEAPAAPAAQET(0.489)KS(0.489)DGAPAS(0.015)DS(0.002)KPGS(0.002)S(0.002)EAAPSSK 53.553 0.0023083 31445000 4539.5 4024.6 4328.2 4157.3 3850.9 3847 3818.6 4732.8 3181.3 4328.5 TRUE FALSE FALSE 4007.386691 4148.593156 4562.195584 4326.852663 3566.826779 3773.624885 3965.884681 5271.562821 3050.165467 4302.753889 0.931353918 0.964171612 1.060296661 1.005600779 0.828963699 0.877025501 0.921708465 1.225160201 0.708886807 1 12.07104461 KVTAEADSS(ph)SPTGILATSESK ddPTM_HeLa_CUDC101_4h_R1 2 KVTAEADSSSPTGILATSESK 21 1 A0MZ66-4;A0MZ66;A0MZ66-3;A0MZ66-7;A0MZ66-8;A0MZ66-5;A0MZ66-6 A0MZ66-4 KIAA1598 Shootin-1 1 0 KVT(0.001)AEADS(0.091)S(0.484)S(0.394)PT(0.029)GILATSESK;KVTAEADS(0.006)S(0.482)S(0.482)PT(0.029)GILATSESK ; 79.663 0.00093269 62841000 10877.2 10883.4 9962.9 10234.6 11982 10014.6 9970.2 10350.5 11385.2 11175.4 TRUE FALSE FALSE 9602.191105 11218.70465 10501.52451 10652.01123 11098.11173 9823.58819 10354.75395 11528.75908 10915.89724 11108.92822 0.864367013 1.00988182 0.945322924 0.95886939 0.999026324 0.884296666 0.932110978 1.037792202 0.982623797 1 13.43943201 KVTPIDSPPVWS(ph)PEGYMALQSK ddPTM_HeLa_CUDC101_4h_R1 1 KVTPIDSPPVWSPEGYMALQSK 22 1 Q5JSZ5;Q5JSZ5-5 Q5JSZ5 PRRC2B Protein PRRC2B 1 0 KVTPIDSPPVWS(0.998)PEGY(0.002)MALQSK 107.19 1.24E-05 12531000 1023.9 1588.7 1267.3 1113.9 1481.2 1179.6 964.68 1052.4 1248.8 1250.8 TRUE FALSE FALSE 903.8799941 1637.645964 1335.814071 1159.329657 1371.934827 1157.101095 1001.888031 1172.200962 1197.323935 1243.360186 0.726965528 1.31711308 1.074358087 0.932416584 1.103409006 0.930624214 0.805790665 0.942768616 0.962974325 1 10.28002857 KVTSPSSSSSSSSSDS(ph)ES(ph)DDEADVSEVTPR ddPTM_HeLa_CUDC101_4h_R1 1 KVTSPSSSSSSSSSDSESDDEADVSEVTPR 30 1 P56181-2 P56181-2 2 0 KVTSPSSSSSS(0.002)S(0.014)S(0.395)S(0.397)DS(0.544)ES(0.647)DDEADVSEVTPR 92.901 1.98E-08 12080000 497.04 599.26 306.5 599.07 442.55 674.76 492.51 331.98 687.49 444.33 TRUE FALSE FALSE 438.7777247 617.7224903 323.0703171 623.502664 409.9039682 661.8900772 511.5062757 369.7712613 659.1513712 441.6871054 0.993413028 1.398552239 0.731446115 1.411638819 0.92804151 1.498549695 1.158073825 0.837179208 1.492349138 1 8.786880905 LAAAAS(ph)PHSGGR ddPTM_HeLa_CUDC101_4h_R1 2 LAAAASPHSGGR 12 0 O95613-2;O95613 O95613-2 PCNT Pericentrin 1 0 LAAAAS(1)PHSGGR;LAAAAS(1)PHSGGR ; 117.48 0.002485 10926700 7118.6 5516.8 6383 6651.4 6279.6 6820.8 6264.4 5324.4 6291.4 6194.9 TRUE FALSE FALSE 6284.168499 5686.766069 6728.084288 6922.672842 5816.366419 6690.704604 6506.020006 5930.508174 6032.065829 6158.052459 1.020479858 0.923468273 1.0925669 1.124165942 0.944513944 1.086496851 1.056506103 0.96304931 0.979541157 1 12.58825844 LASDDRPS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 LASDDRPSPPR 11 1 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 1 0 LAS(0.001)DDRPS(0.999)PPR 91.307 0.012967 11391000 2649.9 2461.6 2803.4 2469.9 2923.9 2868.5 2699.8 2118 2803.1 2929.5 TRUE FALSE FALSE 2339.282739 2537.438978 2954.960284 2570.633198 2708.209722 2813.788142 2803.93219 2359.104559 2687.555032 2912.075204 0.803304371 0.871350772 1.014726639 0.882749592 0.929993057 0.966248447 0.962863935 0.810111139 0.922900284 1 11.5078319 LEEAMS(ph)ELT(ph)MPS(ph)S(ph)VLK ddPTM_HeLa_CUDC101_4h_R1 1 LEEAMSELTMPSSVLK 16 0 Q9ULT0;Q9ULT0-4;G5E9G4 Q9ULT0 TTC7A Tetratricopeptide repeat protein 7A 4 0 LEEAMS(1)ELT(1)MPS(1)S(1)VLK 55.66 0.0032806 0 282 532.02 331.79 439.16 731.54 922.48 768.4 345.46 705.04 0 TRUE FALSE FALSE 248.9443875 548.4109056 349.727571 457.070843 677.5757516 904.885231 798.0374454 384.78577 675.9779528 0 0 LEEEPSAS(ph)SPQYACDFNLFLEDSADNR ddPTM_HeLa_CUDC101_4h_R1 1 LEEEPSASSPQYACDFNLFLEDSADNR 27 0 Q2NKX8;B5MDQ0 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 0 LEEEPS(0.109)AS(0.351)S(0.314)PQY(0.226)ACDFNLFLEDSADNR 51.473 0.014941 1913100 244.46 199.72 244.51 212.68 284.78 169.24 192.06 159.27 76.505 0 TRUE FALSE FALSE 215.8047694 205.8731365 257.7289502 221.3540097 263.7723468 166.012029 199.4678185 177.400653 73.35143152 0 0 LELSSSAS(ph)PQEER ddPTM_HeLa_CUDC101_4h_R1 2 LELSSSASPQEER 13 0 A0A075B6T1;Q9C0C7-6;Q9C0C7-4;Q9C0C7-2;Q9C0C7-3;Q9C0C7;Q9C0C7-5 A0A075B6T1 AMBRA1 Activating molecule in BECN1-regulated autophagy protein 1 1 0 LELS(0.013)S(0.013)S(0.009)AS(0.965)PQEER;LELSS(0.004)S(0.019)AS(0.977)PQEER ; 162.67 4.18E-05 14767500 2749.6 2459.2 2162.66 2227.3 2812.8 2535.4 2392.5 1922.63 2460 2466.4 TRUE FALSE FALSE 2427.296056 2534.965037 2279.579941 2318.138921 2605.305348 2487.041469 2484.779526 2141.494428 2358.597759 2451.729743 0.990034103 1.03394962 0.929784348 0.945511604 1.062639696 1.014402781 1.01348019 0.873462678 0.962013764 1 11.25958424 LFPDT(ph)PLALDANK ddPTM_HeLa_CUDC101_4h_R1 2 LFPDTPLALDANK 13 0 Q12906-7;Q12906-4;Q12906-6;Q12906;Q12906-5;Q12906-2;Q12906-3 Q12906-7 ILF3 Interleukin enhancer-binding factor 3 1 0 LFPDT(1)PLALDANK;LFPDT(1)PLALDANK ; 176.56 9.49E-07 393040000 11777.4 10475.7 8694 9407.2 10598.2 9623.5 9872.8 7827.9 9590.2 9566.9 TRUE FALSE FALSE 10396.87103 10798.4439 9164.023938 9790.866277 9816.391901 9439.947771 10253.5972 8718.996495 9194.887897 9509.995653 1.09325718 1.135483579 0.963620203 1.029534254 1.032218337 0.992634289 1.078191576 0.916824446 0.966865626 1 13.21522897 LGAGEGGEASVS(ph)PEKTSTTSK ddPTM_HeLa_CUDC101_4h_R1 6 LGAGEGGEASVSPEKTSTTSK 21 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 LGAGEGGEAS(0.159)VS(0.772)PEKT(0.05)S(0.017)T(0.001)T(0.001)SK;LGAGEGGEAS(0.196)VS(0.445)PEKT(0.316)S(0.031)T(0.009)T(0.002)S(0.001)K;LGAGEGGEAS(0.048)VS(0.886)PEKT(0.035)S(0.012)T(0.006)T(0.01)S(0.004)K;LGAGEGGEAS(0.037)VS(0.962)PEKT(0.001)STTSK;LGAGEGGEAS(0.011)VS(0.737)PEKT(0.161)S(0.059)T(0.022)T(0.008)S(0.003)K;LGAGEGGEAS(0.185)VS(0.813)PEKT(0.001)STTSK ;;;;; 118.22 7.14E-07 2353630000 12587.46 22024.4 11310.63 13124.06 13750.56 13142.56 12636.8 14030.64 12862.13 13514.07 TRUE FALSE FALSE 11111.97702 22702.94566 11922.11687 13659.31589 12736.20858 12891.88756 13124.20561 15627.83134 12331.94756 13433.68771 0.827172498 1.690001 0.887479084 1.0167957 0.948079847 0.959668547 0.976962238 1.163331446 0.917986768 1 13.71356778 VTVLFAGQHIAK ddPTM_HeLa_CUDC101_4h_R1 2 VTVLFAGQHIAK 12 0 P21333-2;P21333;Q60FE5;A0A087WWY3;F8WE98 P21333-2 FLNA Filamin-A 0 0 ; ; 107.34 0.0037942 14719800 8126.1 5220.6 4203.6 5503.3 4093 4758.3 4772.2 4430 4395.8 3732.2 FALSE FALSE TRUE 7173.570876 5381.440498 4430.859331 5727.748361 3791.067544 4667.543355 4956.265353 4934.293293 4214.603263 3710.000708 1.933576686 1.450522768 1.194301478 1.543867188 1.021850895 1.258097699 1.335920325 1.329997938 1.136011444 1 11.85720375 -6.785897209 21.10385223 1.453898991 1.282356617 0.002680976 0.262089852 106.1195165 91565.99343 0.058717261 0.077217088 1.64E-07 6.785897209 -0.171542374 LGAGGGSPEKS(ph)PSAQELK ddPTM_HeLa_CUDC101_4h_R1 1 LGAGGGSPEKSPSAQELK 18 1 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 0 LGAGGGS(0.002)PEKS(0.749)PS(0.25)AQELK 62.055 0.020755 39149000 2221 2429 2699.6 2545.1 2547.9 2117.5 2148.9 2651.7 2639.4 2529.5 TRUE FALSE FALSE 1960.657747 2503.834611 2845.548542 2648.900179 2359.946493 2077.112215 2231.783793 2953.558809 2530.602815 2514.454422 0.779754737 0.995776495 1.131676326 1.053469157 0.938552106 0.826068748 0.887581725 1.174632073 1.006422226 1 11.29602969 LGDSS(ph)LSR ddPTM_HeLa_CUDC101_4h_R1 1 LGDSSLSR 8 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 0 LGDS(0.083)S(0.917)LSR 109.44 0.011859 76969000 8667.8 5484.5 7266.5 6859.3 6361.6 6532.6 7438.2 6929.7 5484.6 7210.1 TRUE FALSE FALSE 7651.773624 5653.470944 7659.34897 7139.051902 5892.317442 6408.001539 7725.093866 7718.549037 5258.522467 7167.214005 1.067607807 0.788796168 1.068664751 0.996070704 0.822121042 0.894071467 1.077837757 1.076924595 0.733691287 1 12.80719672 VVDDEIYYFR ddPTM_HeLa_CUDC101_4h_R1 1 VVDDEIYYFR 10 0 Q86U86-8;Q86U86;E7EVG2;Q86U86-5;Q86U86-7;Q86U86-3;Q86U86-2;Q86U86-4;Q86U86-9 Q86U86-8 PBRM1 Protein polybromo-1 0 0 115.7 0.03455 3713200 1215.5 934.51 875.2 933.32 1026.7 1113.8 976.34 843.44 1182.2 1029.4 FALSE FALSE TRUE 1073.020933 963.3011454 922.5159593 971.3848238 950.9623865 1092.556121 1013.997761 939.4538003 1133.469216 1023.277083 1.048612297 0.94138837 0.901530949 0.949288164 0.929330288 1.067703107 0.99093176 0.918083495 1.107685528 1 9.998981136 -7.257005921 24.8204805 1.022955807 0.958982794 0.374703052 0.052403705 333.4163048 1866615.68 0.00814307 0.009783185 5.53E-08 7.257005921 -0.063973013 LGFSS(ph)SPTK ddPTM_HeLa_CUDC101_4h_R1 2 LGFSSSPTK 9 0 Q8IVF2;Q8IVF2-3;Q8IVF2-2 Q8IVF2 AHNAK2 Protein AHNAK2 1 0 LGFS(0.045)S(0.436)S(0.308)PT(0.211)K;LGFS(0.057)S(0.466)S(0.466)PT(0.012)K ; 112.36 0.0090547 96514000 12839.5 9639.2 6929.6 9676.2 8757.1 8787.9 8234.9 8799 8058.6 8594.3 TRUE FALSE FALSE 11334.47327 9936.172327 7304.235137 10070.83726 8111.10618 8620.285449 8552.522852 9800.642593 7726.421097 8543.180721 1.326727555 1.163053042 0.854978418 1.178815899 0.949424628 1.009025295 1.001093519 1.147188958 0.904396307 1 13.06055759 VVDESDETENQEEK ddPTM_HeLa_CUDC101_4h_R1 1 VVDESDETENQEEK 14 0 O75717;O75717-2 O75717 WDHD1 WD repeat and HMG-box DNA-binding protein 1 0 0 195.77 1.22E-23 0 1014.5 910.31 832.94 1035.9 766.67 981.66 788.23 694.58 1008 1008 FALSE FALSE TRUE 895.5818479 938.3555721 877.9712559 1078.14848 710.1142815 962.9364711 818.6322951 773.6481796 966.4498134 1002.004371 0.89379036 0.936478522 0.876214996 1.075991793 0.708693796 0.96101025 0.816994734 0.772100603 0.964516564 1 9.968673087 -1 0.143556732 1.004850008 0.28664426 0.291066944 0.088562522 68.3793703 0.643693315 0.208575745 10.17148712 0.1 1 -0.718205747 VVDLMAHMASK ddPTM_HeLa_CUDC101_4h_R1 2 VVDLMAHMASK 11 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 94.82 0.017411 13746500 13381.4 10515 8587.4 9889.8 9244.3 9625.1 9105.8 7289.8 8300.3 8169.8 FALSE FALSE TRUE 11812.85258 10838.95469 9051.660819 10293.14879 8562.366406 9441.517254 9457.013756 8119.641366 7958.158121 8121.205666 1.454568824 1.334648466 1.114571061 1.267440971 1.054322075 1.16257581 1.164483963 0.999807381 0.979923234 1 12.98747821 -5.76373781 24.98789758 1.224613331 1.105044817 0.069064285 0.144826008 119.2289969 1296250.168 0.026546398 0.049834548 1.72E-06 5.76373781 -0.119568515 VVDLMAHMASKE ddPTM_HeLa_CUDC101_4h_R1 2 VVDLMAHMASKE 12 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 0 ; ; 122.46 0.0030945 73905000 23848 18996.6 16217.5 18509.4 24313 20581.3 20758.7 22316 16573.4 14377.3 FALSE FALSE TRUE 21052.57359 19581.86273 17094.26711 19264.29334 22519.47843 20188.74599 21559.37001 24856.36324 15890.23744 14291.78318 1.473054365 1.370148321 1.196090571 1.347927903 1.575694099 1.41261211 1.50851505 1.739206572 1.111844284 1 13.80289831 -11.97298927 0.178820843 3.60E-23 1.585291751 0.659779115 0.12296088 15.47281212 0.291747696 5.96461922 0.209380985 1.06E-12 11.97298927 1.585291751 LGGAVPFAPPEVS(ph)PEQAK ddPTM_HeLa_CUDC101_4h_R1 2 LGGAVPFAPPEVSPEQAK 18 0 A0A096LNZ0;A0A096LP25;Q6ZSR9 A0A096LNZ0 AAK1 Uncharacterized protein FLJ45252 1 0 LGGAVPFAPPEVS(1)PEQAK;LGGAVPFAPPEVS(1)PEQAK ; 129.36 3.26E-05 150500000 2149.1 1896.53 1736.54 1911.22 2301.8 1872.83 1698.9 1949.03 2116.2 1988.27 TRUE FALSE FALSE 1897.185756 1954.959841 1830.422605 1989.167813 2132.0008 1837.108888 1764.427142 2170.899697 2028.96934 1976.443682 0.959898718 0.989130052 0.926119283 1.006437892 1.078705566 0.92950227 0.892728267 1.098386823 1.026575844 1 10.94869113 VVDPFSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 VVDPFSKK 8 1 H0Y9Y4;P61247;D6RI02;H0Y8L7;E9PFI5 H0Y9Y4 RPS3A 40S ribosomal protein S3a 0 1 VVDPFSK(1)K 86.67 0.034684 1086700 2643 1332 1173.7 925.37 3178.8 2754.7 2787.1 2667 2827.4 1923.6 FALSE TRUE FALSE 2333.191547 1373.037341 1237.153772 963.1105884 2944.306257 2702.158687 2894.599381 2970.6005 2710.853375 1912.158342 1.220187416 0.718056299 0.646993371 0.503677215 1.539781614 1.413145882 1.513786446 1.553532694 1.417692937 1 10.90098628 -5.708839054 24.99991433 0.998636815 1.499120782 0.535354624 0.261587417 70.69672961 33600.31623 0.039169219 0.078338384 1.96E-06 5.708839054 0.500483967 VVDRDSEEAEIIR ddPTM_HeLa_CUDC101_4h_R1 4 VVDRDSEEAEIIR 13 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 0 ;;; ;;; 185.57 6.65E-11 53361900 8582.6 6611.4 7473.4 6690.44 6950.5 6714.1 6890.53 6747.67 7605.5 7859 FALSE FALSE TRUE 7576.560638 6815.089398 7877.43461 6963.305062 6437.775462 6586.039729 7156.30005 7515.797478 7291.998071 7812.254318 0.96983026 0.872358876 1.00834334 0.891331078 0.824061174 0.843039597 0.916035213 0.962052331 0.933405106 1 12.9315232 -7.169608806 0.73282418 0.993792841 0.888370136 0.192566979 0.054531088 0.446706532 0.49682596 0.013381853 0.016928931 6.77E-08 7.169608806 -0.105422705 VVDRDSEEAEIIRK ddPTM_HeLa_CUDC101_4h_R1 3 VVDRDSEEAEIIRK 14 2 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 0 ;; ;; 81.709 0.011155 23979100 7611.1 7319.4 7071.74 7305.3 8786.6 7757.1 7496.7 7944.3 7841 8341.7 FALSE FALSE TRUE 6718.938396 7544.902038 7454.059655 7603.24171 8138.430023 7609.146242 7785.85023 8848.647 7517.790661 8292.083197 0.810283524 0.909892226 0.898936911 0.916927813 0.981469895 0.917639881 0.938949845 1.067119901 0.906622676 1 13.01751888 -5.835549136 5.34013917 0.907388138 0.96938643 0.265323407 0.056057828 0.340175827 17.33909213 0.011526536 0.021343912 1.46E-06 5.835549136 0.061998292 LHQLAMQQSHFPMTHGNTGFSGIESS(ph)SPEVK ddPTM_HeLa_CUDC101_4h_R1 3 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK 31 0 Q15366-2;Q15366;Q15366-3;Q15366-6;Q15366-5;Q15366-4;F8VRH0;H3BRU6;F8VZX2 Q15366-2;H3BRU6 PCBP2 Poly(rC)-binding protein 2 1 0 LHQLAMQQSHFPMT(0.006)HGNT(0.027)GFS(0.027)GIES(0.03)S(0.455)S(0.455)PEVK;LHQLAMQQS(0.001)HFPMT(0.006)HGNT(0.016)GFS(0.023)GIES(0.082)S(0.484)S(0.387)PEVK;LHQLAMQQSHFPMT(0.048)HGNT(0.048)GFS(0.01)GIES(0.144)S(0.443)S(0.306)PEVK ;; 93.073 1.14E-08 185709000 4774.93 2904.82 2488.36 2492.3 5537.5 4358.14 4337.04 2959.63 4145.28 4172.33 TRUE FALSE FALSE 4215.219944 2994.314061 2622.888268 2593.946767 5129.009657 4275.015741 4504.321086 3296.542316 3974.409804 4147.512796 1.016324759 0.721954147 0.632400284 0.625422246 1.236647097 1.030742026 1.086029461 0.794823905 0.958263422 1 12.01803072 LHS(ph)APNLSDLHVVRPK ddPTM_HeLa_CUDC101_4h_R1 1 LHSAPNLSDLHVVRPK 16 1 O75385 O75385 ULK1 Serine/threonine-protein kinase ULK1 1 0 LHS(1)APNLSDLHVVRPK 75.589 0.010741 10142000 3836.6 3276.1 3250.4 3533.7 4030.3 3570.3 3973.5 3088.7 3468.6 3937.7 TRUE FALSE FALSE 3386.879564 3377.032758 3426.126456 3677.81956 3732.992798 3502.202476 4126.759226 3440.305123 3325.62284 3914.278385 0.865262823 0.86274721 0.87528942 0.939590698 0.953686077 0.894724936 1.054283528 0.878911714 0.849613265 1 11.93453065 LIDLESPT(ph)PESQK ddPTM_HeLa_CUDC101_4h_R1 1 LIDLESPTPESQK 13 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 0 LIDLES(0.204)PT(0.76)PES(0.036)QK 130.19 0.0054884 12152000 3134.3 2852.6 2446.7 2702 3557.4 3185.9 2971.5 2940.1 2968.7 3436.8 TRUE FALSE FALSE 2766.902105 2940.485225 2578.976003 2812.199239 3294.977689 3125.134266 3086.11175 3274.7891 2846.328929 3416.357761 0.809898231 0.86070764 0.754890496 0.823157127 0.964470913 0.914756148 0.903333891 0.958561523 0.833147208 1 11.73824335 LKNDMAVPT(ph)PPPPPVPPTK ddPTM_HeLa_CUDC101_4h_R1 1 LKNDMAVPTPPPPPVPPTK 19 1 G3V1P5;Q96RN5-3;Q96RN5-2;Q96RN5 G3V1P5 MED15 Mediator of RNA polymerase II transcription subunit 15 1 0 LKNDMAVPT(1)PPPPPVPPTK 108.34 0.000433 32817000 2626.9 2555 2749.6 2284.4 2691.4 2252.1 2713.4 2489.7 2175.6 2725.7 TRUE FALSE FALSE 2318.978764 2633.716522 2898.251693 2377.567706 2492.860784 2209.144945 2818.056747 2773.117384 2085.920847 2709.487415 0.855873606 0.972034971 1.069667892 0.877497232 0.920048851 0.815336854 1.040070063 1.023484135 0.769858105 1 11.40380423 VVDYSQFQESDDADEDYGR ddPTM_HeLa_CUDC101_4h_R1 2 VVDYSQFQESDDADEDYGR 19 0 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 0 0 ; ; 277.41 3.53E-86 43407000 3752.9 3449.5 3474.5 3564.1 3506.9 3833.9 2855.1 3444.3 3841.8 3842.8 FALSE FALSE TRUE 3312.990751 3555.775006 3662.34198 3709.459403 3248.202974 3760.774745 2965.222163 3836.38519 3683.439378 3819.942855 0.86728804 0.930845078 0.958742609 0.971077198 0.850327635 0.984510734 0.776247781 1.004304341 0.964265571 1 11.89933534 -7.073563775 0.010097666 1.848673696 4.98E-07 0.062246047 0.069152764 1926.054603 15.12879557 1374.601718 1393.717564 8.44E-08 7.073563775 -1.848673198 LKPGGVGAPSSSSPSPS(ph)PSAR ddPTM_HeLa_CUDC101_4h_R1 1 LKPGGVGAPSSSSPSPSPSAR 21 1 Q92797 Q92797 SYMPK Symplekin 1 0 LKPGGVGAPSS(0.001)S(0.002)S(0.001)PS(0.311)PS(0.581)PS(0.104)AR 160.83 1.29E-07 31124000 3181.5 1818.6 2010.4 2243.6 1794.4 2220.5 1954.4 1947.2 1804.5 1891.5 TRUE FALSE FALSE 2808.569393 1874.62891 2119.088305 2335.103706 1662.030687 2178.147662 2029.781863 2168.861377 1730.117746 1880.249274 1.493721834 0.997010841 1.127025195 1.241911771 0.883941672 1.158435582 1.079528066 1.153496724 0.920153392 1 10.87670822 LKS(ph)Y(ph)VDT(ph)GGVS(ph)RK ddPTM_HeLa_CUDC101_4h_R1 1 LKSYVDTGGVSRK 13 2 O95466;O95466-2;O95466-3 O95466 FMNL1 Formin-like protein 1 4 0 LKS(1)Y(1)VDT(1)GGVS(1)RK 54.608 0.031613 4692400 0 0 54.778 0 111.2 114.55 140.57 0 109.81 0 TRUE FALSE FALSE 0 0 57.73946437 0 102.9969975 112.3651496 145.991832 0 105.2835853 0 0 VVEEIRR ddPTM_HeLa_CUDC101_4h_R1 1 VVEEIRR 7 1 A0A2R8YD50;P51659-3;P51659;P51659-2;E7ER27;A0A2R8YDT8;A0A2R8YF45 A0A2R8YD50 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 0 99.375 0.0016553 0 1666 1372.3 1378.1 1443.2 1398.2 1223.6 1330.9 1359.7 984.31 1442.7 FALSE FALSE TRUE 1470.714005 1414.578936 1452.604255 1502.059934 1295.057572 1200.261869 1382.233259 1514.482752 943.7363252 1434.118756 1.025517586 0.986375034 1.012889796 1.047374862 0.903033703 0.836933387 0.963820641 1.056037197 0.658060095 1 10.48594878 -5.759821173 24.99797224 1.01246876 0.934302056 0 0.124088642 39.06457652 603447.0591 0.007862464 0.01508568 1.74E-06 5.759821173 -0.078166704 LLANY(ph)AS(ph)QNIT(ph)Y(ph)HCK ddPTM_HeLa_CUDC101_4h_R1 1 LLANYASQNITYHCK 15 0 A0A087WTA8;P08123 A0A087WTA8 COL1A2 Collagen alpha-2(I) chain 4 0 LLANY(1)AS(1)QNIT(1)Y(1)HCK 45.864 0.034701 33391000 2217.6 2025.6 1899.5 1320.5 1943.1 1820.2 1898.9 1849.1 2288.7 2019.8 TRUE FALSE FALSE 1957.65629 2088.006335 2002.192716 1374.355698 1799.761384 1785.482718 1972.141209 2059.59407 2194.358817 2007.78614 0.975032276 1.039954552 0.997214134 0.684512992 0.896390979 0.889279332 0.98224665 1.02580351 1.092924577 1 10.97138989 VVFVFGPDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VVFVFGPDKK 10 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 1 ; VVFVFGPDK(1)K;VVFVFGPDK(1)K 120.07 0.0030194 1404910 2091.17 448.04 325.69 458.66 1192.43 831.35 636.659 819.56 556 156.77 FALSE TRUE FALSE 1846.046223 461.8435813 343.2977866 477.3661373 1104.466815 815.4933839 661.2151509 912.8553976 533.0814447 155.8375251 11.84596728 2.963622408 2.202921192 3.063229714 7.08729694 5.232971863 4.242977746 5.857738033 3.420751481 1 7.28389886 -9.792835127 1.796208407 0.988927084 6.356438958 0.055622809 2.847405548 0.42286207 2.469965679 2.608410876 0.547415294 1.61E-10 9.792835127 5.367511873 LLEDS(ph)EESS(ph)EETVSR ddPTM_HeLa_CUDC101_4h_R1 1 LLEDSEESSEETVSR 15 0 A2AB15;A0A140T947;O60231 A2AB15 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 2 0 LLEDS(0.999)EES(0.225)S(0.77)EET(0.005)VSR 199.33 2.05E-15 118060000 2358.4 2260.8 1792.6 1802 2293.6 2304.1 1555.9 1806.8 1890.8 2040.1 TRUE FALSE FALSE 2081.951927 2330.452568 1889.513378 1875.493349 2124.405697 2260.153131 1615.911584 2012.478809 1812.860424 2027.965394 1.026621032 1.149157956 0.93172861 0.924815263 1.047555202 1.114492948 0.796814181 0.992363486 0.89393065 1 10.98581732 LLGLMS(ph)LPT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 LLGLMSLPTK 10 0 H7C204;Q9H1K0 H7C204 RBSN Rabenosyn-5 2 0 LLGLMS(1)LPT(1)K 111.86 0.023202 6057200 1509.1 1262.3 1115.8 1527.7 1639.2 1458.8 1505.1 1085.1 1486 1514.2 TRUE FALSE FALSE 1332.205586 1301.189967 1176.123523 1590.006209 1518.279482 1430.975821 1563.152211 1208.623398 1424.746451 1505.193471 0.885072658 0.864466922 0.781376976 1.056346735 1.008693906 0.950692285 1.038505841 0.802968802 0.946553701 1 10.55573322 VVIIGAGKPAAVVLQTK ddPTM_HeLa_CUDC101_4h_R1 2 VVIIGAGKPAAVVLQTK 17 1 Q14697;Q14697-2;F5H6X6;E9PKU7 Q14697 GANAB Neutral alpha-glucosidase AB 0 0 ; ; 151.56 0.0031611 1391070 1004.17 669.35 717.64 866.84 936.97 959.85 797.74 883.6 672.08 985.33 FALSE FALSE TRUE 886.4627148 689.9718801 756.4377891 902.193482 867.8515898 941.5424605 828.509099 984.1854524 644.3765779 979.4692133 0.90504398 0.704434474 0.772293584 0.921104482 0.886042744 0.961278259 0.84587559 1.004815097 0.657883443 1 9.935856336 -8.407453522 1.20687498 0.983586523 0.872458047 0 0.132097478 0.44377088 1.312390575 0.025416041 0.016980982 3.91E-09 8.407453522 -0.111128477 LLGS(ph)S(ph)FS(ph)S(ph)GPVADGIIRVQPK ddPTM_HeLa_CUDC101_4h_R1 1 LLGSSFSSGPVADGIIRVQPK 21 1 O43597 O43597 SPRY2 Protein sprouty homolog 2 4 0 LLGS(1)S(1)FS(1)S(1)GPVADGIIRVQPK 51.001 0.034043 4461600 305.33 138.84 143.97 201.51 259.03 273.55 190.94 198.84 235.19 233.76 TRUE FALSE FALSE 269.5396803 143.1174958 151.7534537 209.7284488 239.921873 268.3324895 198.3046198 221.4751419 225.4953687 232.3695851 1.159961103 0.615904598 0.653069349 0.902564114 1.032501189 1.154765971 0.853401789 0.953115881 0.970416884 1 7.860277436 LLIDPNCSGHS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 3 LLIDPNCSGHSPR 13 0 Q8WYQ5-3;Q8WYQ5;Q8WYQ5-2;C9JSD5 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 1 0 LLIDPNCSGHS(1)PR;LLIDPNCS(0.159)GHS(0.841)PR;LLIDPNCS(0.001)GHS(0.999)PR ;; 152.89 1.20E-07 17702800 16714.6 11277.6 10726.3 11239.9 17488.3 14997.4 12598.2 10239.4 16528.5 11323.9 TRUE FALSE FALSE 14755.33993 11625.04949 11306.19622 11698.3117 16198.22295 14711.34958 13084.11679 11405.01191 15847.18823 11256.54494 1.31082317 1.032736915 1.004410881 1.039245325 1.439004867 1.306915191 1.162356377 1.013189391 1.407819923 1 13.45847646 LLKEGEEPTVYS(ph)DEEEPK ddPTM_HeLa_CUDC101_4h_R1 1 LLKEGEEPTVYSDEEEPK 18 1 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 LLKEGEEPT(0.01)VY(0.046)S(0.943)DEEEPK 57.148 0.02794 32658000 1833.4 3076.9 4241.7 4312.8 1184.6 1884.1 1518.2 1938.1 2109.7 2913.1 TRUE FALSE FALSE 1618.491631 3171.695642 4471.019132 4488.694626 1097.214418 1848.163932 1576.757483 2158.72547 2022.737273 2895.772752 0.558915278 1.095284718 1.543981353 1.550085249 0.378902114 0.638228235 0.544503184 0.745474751 0.698513815 1 11.49973267 VVLDDKDYFLFR ddPTM_HeLa_CUDC101_4h_R1 3 VVLDDKDYFLFR 12 1 P61604;B8ZZ54 P61604 HSPE1 "10 kDa heat shock protein, mitochondrial" 0 0 ;; ;; 183.03 1.72E-10 1039987300 10743.43 8773.07 7816.87 7982.57 9088.44 9114.43 8466.21 8897.75 8462.53 7475.62 FALSE FALSE TRUE 9484.101421 9043.357888 8239.473637 8308.133708 8418.003888 8940.587433 8792.754556 9910.633894 8113.700932 7431.15468 1.276262146 1.216951911 1.108774342 1.11801383 1.132798906 1.203122236 1.183228574 1.333660019 1.091849286 1 12.85937068 -9.465308441 1.183690313 0.999241113 1.198045771 0.398072574 0.071221302 0.312703628 0.779056578 0.050935012 0.012370601 3.43E-10 9.465308441 0.198804658 LLKEGEEPTVYS(ph)DEEEPKDESAR ddPTM_HeLa_CUDC101_4h_R1 5 LLKEGEEPTVYSDEEEPKDESAR 23 2 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 0 LLKEGEEPT(0.028)VY(0.459)S(0.512)DEEEPKDES(0.001)AR;LLKEGEEPTVY(0.026)S(0.974)DEEEPKDESAR;LLKEGEEPTVY(0.002)S(0.998)DEEEPKDESAR;LLKEGEEPT(0.007)VY(0.07)S(0.923)DEEEPKDESAR;LLKEGEEPT(0.044)VY(0.419)S(0.537)DEEEPKDESAR ;;;; 135.8 1.29E-07 977090000 9746.7 11175.6 8140.21 9895.7 10947.2 8682.62 8813.1 10365.97 8852.22 9448.1 TRUE FALSE FALSE 8604.206601 11519.90699 8580.294375 10299.28942 10139.64687 8517.01349 9153.024219 11545.99012 8487.327745 9391.902281 0.916130337 1.226578668 0.91358429 1.096613775 1.079615882 0.906846476 0.974565529 1.229355862 0.903685695 1 13.19720168 LLLDIPLQT(ph)PHK ddPTM_HeLa_CUDC101_4h_R1 1 LLLDIPLQTPHK 12 0 P49792;A6NKT7;J3KNE0;J3KQ37;O14715;Q99666;P0DJD1;P0DJD0;A0A1W2PNU4;F8VYC4;A0A286YES2 P49792 RANBP2;RGPD3;RGPD8;RGPD5;RGPD2;RGPD1 E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 1 1 0 LLLDIPLQT(1)PHK 93.716 0.023749 9885000 3214.7 2707.6 2885.9 2652.9 2997.6 3526.9 2750.6 2749.3 2342.6 2779.3 TRUE FALSE FALSE 2837.877739 2791.017947 3041.920483 2761.096729 2776.47302 3459.630259 2856.691563 3062.269199 2246.037036 2762.7686 1.027186185 1.010225014 1.101040631 0.999394857 1.004960394 1.252233089 1.033995957 1.108405966 0.812966036 1 11.43189902 LLQTTNNS(ph)PMNSKPQQIK ddPTM_HeLa_CUDC101_4h_R1 1 LLQTTNNSPMNSKPQQIK 18 1 O00178;B0QY59 O00178 GTPBP1 GTP-binding protein 1 1 0 LLQT(0.1)T(0.321)NNS(0.579)PMNSKPQQIK 76.713 0.0070988 50365000 2478.2 2632.4 2603.5 2082.3 2254.9 2288.4 2499 1977.8 2343.8 2457.3 TRUE FALSE FALSE 2187.709153 2713.501124 2744.253085 2167.225194 2088.560519 2244.752583 2595.387267 2202.944757 2247.187572 2442.68387 0.895616981 1.110868728 1.123458143 0.88723114 0.855026942 0.918969749 1.062514597 0.90185422 0.919966599 1 11.25425145 LMSLLTSPHQPPPPPPASASPSAVPNGPQS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 LMSLLTSPHQPPPPPPASASPSAVPNGPQSPK 32 0 Q96RU3-5;Q96RU3-2;Q96RU3 Q96RU3-5 FNBP1 Formin-binding protein 1 1 0 LMSLLTSPHQPPPPPPAS(0.001)AS(0.004)PS(0.004)AVPNGPQS(0.992)PK 129.5 1.13E-15 23390000 1514.3 603.84 746.81 594.36 1376.4 1297.5 1195.2 939.65 1317.9 1029.5 TRUE FALSE FALSE 1336.79605 622.4435947 787.1848076 618.6005698 1274.865714 1272.752349 1241.299264 1046.615958 1263.575604 1023.376488 1.306260272 0.60822542 0.76920353 0.60447018 1.245744581 1.24367949 1.212944873 1.022708622 1.234712365 1 9.999121278 VVLIGGKPDR ddPTM_HeLa_CUDC101_4h_R1 4 VVLIGGKPDR 10 1 P61978;P61978-2;P61978-3;Q5T6W2 P61978 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 0 ;;; ;;; 143.04 0.001461 64635800 10796.9 10422.1 10098.5 10435.8 11093.9 9430.4 8685.9 10283.3 10658 9521.2 FALSE FALSE TRUE 9531.303749 10743.19255 10644.45546 10861.41703 10275.5251 9250.530832 9020.918073 11453.90931 10218.67273 9464.567479 1.00705117 1.135095985 1.124663698 1.147587257 1.085683537 0.97738548 0.953125232 1.21018835 1.079676673 1 13.20832086 -7.346187634 8.771720228 1.003197347 1.084175707 0.088856209 0.076539253 0.433442317 41.89002548 0.01262966 0.014421951 4.51E-08 7.346187634 0.08097836 VVLVLAGR ddPTM_HeLa_CUDC101_4h_R1 1 VVLVLAGR 8 0 P61353;K7EQQ9;K7ERY7 P61353 RPL27 60S ribosomal protein L27 0 0 107.55 0.018437 0 57.744 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 50.97533585 0 0 0 0 0 0 0 0 0 0 LPELDPRGS(ph)DEENLDSETSASTESLLEER ddPTM_HeLa_CUDC101_4h_R1 2 LPELDPRGSDEENLDSETSASTESLLEER 29 1 M0R0P8;Q13459-2;Q13459;M0R300;M0R240;M0QXP0 M0R0P8 MYO9B Unconventional myosin-IXb 1 0 LPELDPRGS(0.997)DEENLDS(0.001)ETS(0.001)AS(0.001)TESLLEER;LPELDPRGS(0.998)DEENLDS(0.001)ETSASTESLLEER ; 71.297 3.71E-05 71017000 4920.1 3999.2 3880.8 4125.6 4862.4 4204.4 3823 4182.2 3871.7 4302.3 TRUE FALSE FALSE 4343.373336 4122.410612 4090.607787 4293.8598 4503.710439 4124.208075 3970.454391 4658.284743 3712.106887 4276.709728 1.015587592 0.963921069 0.956484785 1.004010109 1.053078354 0.96434136 0.928389964 1.08922163 0.867981959 1 12.06228558 LS(ph)CSENELFVS(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 LSCSENELFVSR 12 0 A0A1B0GUQ4;Q68DX3-2;Q68DX3 A0A1B0GUQ4 FRMPD2 FERM and PDZ domain-containing protein 2 2 0 LS(0.996)CS(0.004)ENELFVS(1)R;LS(0.932)CS(0.068)ENELFVS(1)R ; 90.498 0.012215 29567000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LS(ph)LEGDHSTPPSAYGSVK ddPTM_HeLa_CUDC101_4h_R1 1 LSLEGDHSTPPSAYGSVK 18 0 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YKS4;H0YMM1;H0YKX9;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YMD9;H0YNB8;H0YKN4;H0YMW4 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 0 LS(0.999)LEGDHS(0.001)TPPSAYGSVK 128.67 4.41E-05 499210000 6924.6 3118.5 2817.5 2844.9 5410 5641 5685.5 6717.3 5058.9 5339.1 TRUE FALSE FALSE 6112.908885 3214.577289 2969.822572 2960.927319 5010.915078 5533.407324 5904.79164 7481.97028 4850.370001 5307.342796 1.151783316 0.605684881 0.559568637 0.557892609 0.944147622 1.042594672 1.112570238 1.409739406 0.913898006 1 12.37377402 LS(ph)PSPTSQR ddPTM_HeLa_CUDC101_4h_R1 1 LSPSPTSQR 9 0 P02545;P02545-3;P02545-6;P02545-5;P02545-4;A0A0C4DGC5;P02545-2;Q3BDU5;Q5TCI8 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 LS(0.562)PS(0.431)PT(0.006)SQR 110.54 0.0099558 42243000 2510.1 2050.7 2098.2 2105.8 2214.7 2205.1 2129.3 1982 2078.9 2212.7 TRUE FALSE FALSE 2215.869883 2113.879636 2211.635039 2191.683626 2051.325993 2163.041391 2211.427814 2207.622868 1993.206862 2199.538762 1.007424793 0.961055869 1.005499461 0.996428735 0.932616432 0.983406807 1.005405248 1.003675364 0.906193106 1 11.10298531 LS(ph)SPVLHR ddPTM_HeLa_CUDC101_4h_R1 7 LSSPVLHR 8 0 Q16643-3;Q16643;Q16643-2;D6R9W4;D6RCR4 Q16643-3 DBN1 Drebrin 1 0 LS(0.639)S(0.361)PVLHR;LS(0.627)S(0.373)PVLHR;LS(0.541)S(0.459)PVLHR;LS(0.633)S(0.367)PVLHR;LS(0.541)S(0.459)PVLHR;LS(0.637)S(0.363)PVLHR;LS(0.682)S(0.318)PVLHR ;;;;;; 175.91 3.78E-06 3014070000 49331.3 42137.4 38602.2 37421.8 44738.1 40814.5 39950.6 43347.7 43183 39531.8 TRUE FALSE FALSE 43548.7598 43435.60335 40689.1517 38948.02275 41437.85949 40036.03141 41491.50802 48282.22695 41402.97846 39296.6631 1.108205032 1.105325489 1.035435289 0.991127991 1.054487995 1.018815041 1.055853214 1.228659717 1.053600362 1 15.26211919 LS(ph)TGSFPEDLLESDSSR ddPTM_HeLa_CUDC101_4h_R1 1 LSTGSFPEDLLESDSSR 17 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 0 LS(0.375)T(0.375)GS(0.25)FPEDLLESDSSR 159.14 5.29E-08 0 355.57 366.69 359.98 197.9 281.16 464.21 380.56 146.99 338.65 374.88 TRUE FALSE FALSE 313.8906236 377.9872843 379.4416077 205.9712174 260.4193869 455.3559677 395.2383267 163.7227474 324.6907037 372.6501971 0.842319757 1.014321976 1.018224626 0.552720001 0.69883067 1.221939425 1.060614833 0.439347004 0.871301575 1 8.541678212 VVNVSSIMSVR ddPTM_HeLa_CUDC101_4h_R1 1 VVNVSSIMSVR 11 0 P16152 P16152 CBR1 Carbonyl reductase [NADPH] 1 0 0 104.79 0.032681 0 0 0 0 0 0 0 0 0 0 0 FALSE FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 LS(ph)VPTSDEEDEVPAPKPR ddPTM_HeLa_CUDC101_4h_R1 1 LSVPTSDEEDEVPAPKPR 18 1 Q8NE71;Q5STZ8;Q8NE71-2;F5GYK6 Q8NE71 ABCF1 ATP-binding cassette sub-family F member 1 1 0 LS(0.354)VPT(0.354)S(0.292)DEEDEVPAPKPR 73.722 0.0021113 0 741.65 1566.2 919.04 998.32 891.4 841.65 768.66 986.21 1037.6 934.16 TRUE FALSE FALSE 654.7149113 1614.452766 968.7260823 1039.035805 825.6431979 825.5969285 798.3074737 1098.47616 994.8296888 928.6035748 0.705053189 1.738581252 1.043207359 1.1189229 0.889123433 0.889073606 0.859685979 1.182933374 1.071317962 1 9.858919025 LSEGPAAMAGPGS(ph)PPR ddPTM_HeLa_CUDC101_4h_R1 1 LSEGPAAMAGPGSPPR 16 0 Q8N2Y8 Q8N2Y8 RUSC2 Iporin 1 0 LSEGPAAMAGPGS(1)PPR 88.108 0.010091 14703000 465.48 613.04 570.87 349.07 648.66 492.29 539.65 330.39 721.58 489.25 TRUE FALSE FALSE 410.91714 631.9270358 601.732959 363.3065834 600.8096441 482.9003885 560.4644813 368.0002621 691.836167 486.3399192 0.844917564 1.299352594 1.237268287 0.747021927 1.23536979 0.992927723 1.152413074 0.756672951 1.422536254 1 8.925821204 LSS(ph)EDEEEDEAEDDQSEASGKK ddPTM_HeLa_CUDC101_4h_R1 2 LSSEDEEEDEAEDDQSEASGKK 22 1 Q8NEJ9-2;Q8NEJ9;G3V4G1 Q8NEJ9-2 NGDN Neuroguidin 1 0 LS(0.188)S(0.812)EDEEEDEAEDDQSEASGKK;LS(0.168)S(0.832)EDEEEDEAEDDQSEASGKK ; 234.37 3.37E-46 93686000 4119.3 3864.3 3228.8 3218.5 3657.9 3199.5 3526.6 3179.9 3855.8 3369.1 TRUE FALSE FALSE 3636.441898 3983.354503 3403.358695 3349.764342 3388.064005 3138.474868 3662.622143 3541.886962 3696.862292 3349.060443 1.085809576 1.189394629 1.01621298 1.000210178 1.01164612 0.937120999 1.093626766 1.057576303 1.103850574 1 11.7095407 LSVPYVPQVTDEDRLS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 LSVPYVPQVTDEDRLSR 17 1 A0A1B0GUZ7;Q14156-3;Q14156-2;Q14156 A0A1B0GUZ7 EFR3A Protein EFR3 homolog A 1 0 LSVPYVPQVT(0.025)DEDRLS(0.975)R 69.72 0.014534 7341700 1855.2 1068.8 1436.8 1389.1 1311.6 1554.9 1363.8 1265.9 955.05 1342.5 TRUE FALSE FALSE 1637.736268 1101.728461 1514.477754 1445.753502 1214.845881 1525.242873 1416.402223 1410.004939 915.6824348 1334.51475 1.227214812 0.825564844 1.134852765 1.083355206 0.910327803 1.142919457 1.061361235 1.056567519 0.686153851 1 10.38209954 LT(ph)GLGQSNAALR ddPTM_HeLa_CUDC101_4h_R1 2 LTGLGQSNAALR 12 0 Q08378;Q08378-2 Q08378 GOLGA3 Golgin subfamily A member 3 1 0 LT(1)GLGQSNAALR;LT(1)GLGQSNAALR ; 113.24 0.0069639 50763000 13634.8 8255.6 4240.8 9123.4 8674.4 8264.3 7042.7 6216.1 4764.7 2997.5 TRUE FALSE FALSE 12036.54941 8509.945251 4470.070476 9495.491687 8034.506794 8106.672247 7314.339298 6923.715698 4568.297049 2979.670737 4.039556876 2.856001888 1.500189407 3.186758715 2.696441152 2.720660423 2.454747502 2.323651272 1.533154987 1 11.5409372 LTFS(ph)PPGT(ph)EAIY(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 LTFSPPGTEAIYPR 14 0 Q9UIB8-4 Q9UIB8-4 3 0 LT(0.31)FS(0.692)PPGT(0.998)EAIY(1)PR 70.622 0.0031807 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 LTPVSPES(ph)SSTEEK ddPTM_HeLa_CUDC101_4h_R1 1 LTPVSPESSSTEEK 14 0 Q13501;E7EMC7;Q13501-2 Q13501 SQSTM1 Sequestosome-1 1 0 LTPVS(0.285)PES(0.495)S(0.113)S(0.085)T(0.022)EEK 93.478 0.011231 5780700 1954.7 1605.8 1532.3 2187 1727.6 1651.5 1812 2022.5 1857.2 1890.4 TRUE FALSE FALSE 1725.573029 1655.272795 1615.140773 2276.195313 1600.15839 1620.000389 1881.889447 2252.733225 1780.64543 1879.155817 0.918270329 0.880859788 0.859503378 1.211286096 0.851530446 0.862089442 1.001454712 1.198800655 0.947577319 1 10.87586898 LVLVS(ph)PTSEQYDSLLR ddPTM_HeLa_CUDC101_4h_R1 1 LVLVSPTSEQYDSLLR 16 0 O00178 O00178 GTPBP1 GTP-binding protein 1 1 0 LVLVS(0.436)PT(0.314)S(0.25)EQYDSLLR 97.836 0.0051507 1874900 748.34 565.64 719.76 442.24 625.15 565.92 430.48 528.63 741.22 537.1 TRUE FALSE FALSE 660.6207196 583.066698 758.6724028 460.2764587 579.03393 555.1260189 447.0837578 588.8071024 710.6665979 533.9053053 1.23733687 1.092078861 1.420986821 0.86209381 1.084525522 1.039746212 0.837383996 1.102830589 1.331072366 1 9.060440075 LVNTT(ph)ITPEPEPKPQPNSR ddPTM_HeLa_CUDC101_4h_R1 1 LVNTTITPEPEPKPQPNSR 19 1 Q86V48-2;Q86V48-3;Q86V48 Q86V48-2 LUZP1 Leucine zipper protein 1 1 0 LVNT(0.155)T(0.623)IT(0.221)PEPEPKPQPNSR 95.409 0.0026954 38259000 1355.3 1484.7 1486.1 1242.9 1495.5 1688.8 1340.2 1207.1 1654.6 1590.8 TRUE FALSE FALSE 1196.433789 1530.441847 1566.443061 1293.590834 1385.179944 1656.588954 1391.891963 1344.511385 1586.396688 1581.337851 0.756595934 0.967814592 0.990580893 0.818035712 0.875954461 1.047586986 0.88019898 0.850236642 1.003199087 1 10.62692992 LYPPGDEEEAELADSSGLY(ph)HEGSPSPGSPWK ddPTM_HeLa_CUDC101_4h_R1 1 LYPPGDEEEAELADSSGLYHEGSPSPGSPWK 31 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 0 LYPPGDEEEAELADS(0.009)S(0.035)GLY(0.532)HEGS(0.064)PS(0.226)PGS(0.133)PWK 100.04 1.66E-08 15654000 3703.6 2473.3 1752 1953.2 4390.5 3773 2983.9 3797 3202.1 3388.5 TRUE FALSE FALSE 3269.469622 2549.499441 1846.71842 2032.859938 4066.621562 3701.036311 3098.990023 4229.235132 3070.108083 3368.345051 0.970645695 0.756899725 0.548256901 0.603518911 1.207305517 1.098769946 0.920033422 1.255582509 0.911458902 1 11.71782422 MGS(ph)SPLEVPKPR ddPTM_HeLa_CUDC101_4h_R1 1 MGSSPLEVPKPR 12 1 Q8NCE2-2;Q8NCE2 Q8NCE2-2 MTMR14 Myotubularin-related protein 14 1 0 MGS(0.991)S(0.009)PLEVPKPR 92.151 0.010496 15696000 1390.3 1345.9 1211.5 1249.9 1864.6 1765.4 1243.4 867.17 1535.5 1529.1 TRUE FALSE FALSE 1227.331142 1387.365584 1276.997355 1300.876325 1727.052173 1731.727936 1291.358355 965.8851276 1472.20604 1520.004845 0.807452125 0.912737606 0.840127161 0.855836959 1.136214913 1.139291063 0.849575157 0.635448716 0.968553518 1 10.56986021 MGSS(ph)PLEVPKPR ddPTM_HeLa_CUDC101_4h_R1 1 MGSSPLEVPKPR 12 1 Q8NCE2-2;Q8NCE2 Q8NCE2-2 MTMR14 Myotubularin-related protein 14 1 0 MGS(0.017)S(0.983)PLEVPKPR 96.135 0.0083322 13748000 974.98 930.52 1119.1 1100.8 1257.1 1191.6 1076.1 903.43 1122.1 1323.2 TRUE FALSE FALSE 860.6943224 959.1882183 1179.601931 1145.695382 1164.366237 1168.872215 1117.605537 1006.272819 1075.846563 1315.329548 0.654356411 0.729237947 0.896810942 0.871032955 0.885227766 0.888653507 0.849677208 0.765034756 0.81792929 1 10.36120859 VVSETNDTK(ac)VLR ddPTM_HeLa_CUDC101_4h_R1 2 VVSETNDTKVLR 12 1 P05783 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 1 ; VVSETNDTK(1)VLR;VVSETNDTK(1)VLR 181.4 1.26E-07 2852500 669.43 204.17 459.08 559.82 542.94 438.529 438.23 633.11 672.33 523.01 FALSE TRUE FALSE 590.9604302 210.4602357 483.8992534 582.6518793 502.8883979 430.16479 455.1326779 705.1806833 644.6162728 519.8991133 1.136682897 0.404809761 0.930756066 1.120701814 0.967280738 0.827400507 0.875424994 1.356379854 1.239887233 1 9.022087884 MIYAS(ph)SKDAIK ddPTM_HeLa_CUDC101_4h_R1 1 MIYASSKDAIK 11 1 P23528;G3V1A4;E9PP50;E9PK25;E9PQB7;P60981;P60981-2;F6RFD5;Q9Y281;Q9Y281-3 P23528;P60981;Q9Y281 CFL1;DSTN;CFL2 Cofilin-1;Destrin;Cofilin-2 1 0 MIYAS(0.975)S(0.025)KDAIK 122.52 0.018478 16758000 920.82 698.55 981.41 936.12 1235.3 729.47 869.25 1024.2 843.82 1102.5 TRUE FALSE FALSE 812.8828755 720.0714975 1034.467993 974.2990199 1144.17438 715.5565751 902.7772637 1140.790788 809.0373824 1095.942281 0.741720517 0.657034143 0.943907367 0.889005778 1.044009707 0.652914471 0.823745264 1.040922326 0.738211671 1 10.0979561 MKETIQGTGSWGPEPPGPGIPPAYSS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 MKETIQGTGSWGPEPPGPGIPPAYSSPR 28 1 Q9H4L4 Q9H4L4 SENP3 Sentrin-specific protease 3 1 0 MKETIQGTGSWGPEPPGPGIPPAY(0.059)S(0.256)S(0.685)PR;MKETIQGTGSWGPEPPGPGIPPAY(0.002)S(0.079)S(0.92)PR ; 138.93 2.61E-16 67346000 4039.7 4113.6 3392.4 3340.5 3982.5 3700.1 3494.3 3106.8 3856.9 3983.3 TRUE FALSE FALSE 3566.17249 4240.33514 3575.803405 3476.740029 3688.718909 3629.526757 3629.076322 3460.465554 3697.91695 3959.607154 0.900637955 1.070897939 0.903070246 0.878051759 0.931587091 0.916638095 0.916524337 0.873941636 0.933910059 1 11.95114159 MLKT(ph)YSST(ph)SS(ph)FS(ph)DAKSQK ddPTM_HeLa_CUDC101_4h_R1 1 MLKTYSSTSSFSDAKSQK 18 2 A0A0G2JM79;A0A0G2JPW3;Q8IVI9-3;Q8IVI9-2;Q8IVI9;Q8IVI9-4 A0A0G2JM79 NOSTRIN Nostrin 4 0 MLKT(0.369)Y(0.568)S(0.169)S(0.169)T(0.39)S(0.39)S(0.861)FS(0.663)DAKS(0.421)QK 45.452 0.035073 21707000 1589.7 1139.6 1259.8 1442 1526.3 1515 1358.2 1100.1 1562.9 1372.7 TRUE FALSE FALSE 1403.357776 1174.709725 1327.908599 1500.810993 1413.70789 1486.103899 1410.586229 1225.330937 1498.4766 1364.535119 1.028451196 0.860886399 0.973158243 1.099869818 1.036036281 1.089091719 1.03374857 0.89798417 1.098159057 1 10.41419381 MLPHAPGVQMQAIPEDAIPEES(ph)GDEDEDDPDKR ddPTM_HeLa_CUDC101_4h_R1 26 MLPHAPGVQMQAIPEDAIPEESGDEDEDDPDKR 33 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 1 0 MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR ;;;;;;;;;;;;;;;;;;;;;;;;; 134.53 1.18E-22 1990403000 77902.3 73825.1 72217.8 71280.8 79612.6 73535.7 69028.1 72302.9 75884.2 78112.3 TRUE FALSE FALSE 68770.71049 76099.56383 76122.11271 74187.93913 73739.73711 72133.12904 71690.53694 80533.56988 72756.22116 77647.68457 0.885676255 0.980062242 0.980352642 0.955443031 0.949670779 0.928979781 0.923279778 1.037166405 0.937004388 1 16.24465528 VVTVHLEK ddPTM_HeLa_CUDC101_4h_R1 2 VVTVHLEK 8 0 Q9Y266 Q9Y266 NUDC Nuclear migration protein nudC 0 0 ; ; 100.02 0.0087153 9263500 12394.9 9827.9 8272.5 9200.5 9341.5 9056.3 8787.4 8402.2 9144.4 8591.5 FALSE FALSE TRUE 10941.98861 10130.68595 8719.736373 9575.736158 8652.396156 8883.566166 9126.332962 9358.672485 8767.463962 8540.397376 1.281203688 1.186207796 1.020998905 1.121228409 1.013114001 1.040181829 1.068607532 1.095812299 1.026587356 1 13.06008748 -6.758594887 24.9970519 1.140507244 1.060134578 0.117811251 0.079888588 130.658432 1148204.021 0.017459773 0.024064682 1.74E-07 6.758594887 -0.080372666 MLS(ph)KS(ph)GY(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 MLSKSGYPK 9 1 P13521 P13521 SCG2 Secretogranin-2;Secretoneurin;Manserin 3 0 MLS(1)KS(1)GY(1)PK 50.034 0.0033597 0 0 0 0 0 0 0 150.29 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 156.0867356 0 0 0 0 VVVFIKPTCPYCR ddPTM_HeLa_CUDC101_4h_R1 2 VVVFIKPTCPYCR 13 1 P35754 P35754 GLRX Glutaredoxin-1 0 0 ; ; 116.84 0.012392 5978800 2752.7 2382.3 2734.04 2320.86 2389.91 2256.16 1936.32 2083.91 2078.34 1504.34 FALSE FALSE TRUE 2430.032679 2455.695839 2881.850472 2415.514702 2213.611101 2213.127507 2011.004511 2321.133891 1992.669946 1495.392119 1.625013699 1.642175192 1.927153712 1.615305225 1.480288061 1.479964672 1.344800796 1.552190801 1.332540088 1 10.54630812 -9.149612004 0.877772083 0.995778686 1.582421507 0.439593334 0.173514717 0.295803022 0.407056872 0.111570353 0.031300524 7.09E-10 9.149612004 0.586642821 MNS(ph)TGGQTPR ddPTM_HeLa_CUDC101_4h_R1 2 MNSTGGQTPR 10 0 Q96ST2-3;Q96ST2;Q96ST2-2;A0A1B0GW95 Q96ST2-3 IWS1 Protein IWS1 homolog 1 0 MNS(0.767)T(0.23)GGQT(0.003)PR;MNS(0.913)T(0.086)GGQT(0.001)PR ; 115.37 0.0063614 61639000 3812 2868.8 3879.3 4124.5 3994.4 3813.6 4707 3250.6 3616.4 4057.3 TRUE FALSE FALSE 3365.163139 2957.184328 4089.026692 4292.714938 3699.74107 3740.861934 4888.550567 3620.635165 3467.330461 4033.166999 0.834372378 0.733216435 1.013850082 1.064353382 0.917329005 0.927524681 1.212087317 0.897715162 0.859704164 1 11.97769743 VVVPATEEEAEVDEFPTDGEMSAQEEDR ddPTM_HeLa_CUDC101_4h_R1 1 VVVPATEEEAEVDEFPTDGEMSAQEEDR 28 0 B5MCF9;O00541;B3KXD6 B5MCF9 PES1 Pescadillo homolog 0 0 185.25 2.37E-22 3953000 5685.5 4564.4 4276.9 4636.1 5136.5 4875.3 4112.4 3446.9 5612.3 5283.7 FALSE FALSE TRUE 5019.054309 4705.023754 4508.122151 4825.180197 4757.590628 4782.311775 4271.016646 3839.281163 5380.958619 5252.272317 0.955596741 0.895807275 0.858318434 0.918684315 0.905815681 0.910522434 0.81317502 0.730975268 1.024501072 1 12.358726 -1.244300863 0.192203244 1.008538262 3.14E-16 0.791889404 0.037321388 16.72059391 0.204362284 0.041595421 4.95636471 0.056976942 1.244300863 -1.008538262 MPCESS(ph)PPESADTPTSTR ddPTM_HeLa_CUDC101_4h_R1 3 MPCESSPPESADTPTSTR 18 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 MPCES(0.147)S(0.844)PPES(0.009)ADTPTSTR;MPCES(0.152)S(0.835)PPES(0.013)ADTPTSTR;MPCES(0.022)S(0.967)PPES(0.011)ADTPTSTR ;; 129.05 6.78E-05 45606700 2733.55 2601.75 4284.2 2609.69 3278.63 2770.91 2700.79 2773.12 3316.2 3535.9 TRUE FALSE FALSE 2413.127413 2681.906834 4515.816811 2716.124438 3036.771997 2718.059508 2804.960375 3088.800771 3179.504832 3514.86831 0.686548457 0.763017729 1.284775534 0.772752831 0.863978883 0.77330337 0.79802716 0.878781365 0.904587186 1 11.77925492 VVVSPTK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 VVVSPTKK 8 1 P19338;C9JYW2;C9JLB1;C9J1H7;C9JWL1 P19338 NCL Nucleolin 0 1 ; VVVSPTK(1)K;VVVSPTK(1)K 115.49 0.0028244 20790800 15863.7 15975.7 17240.7 24859 24277 23948.7 25558.2 26264 7727.6 5597 FALSE TRUE FALSE 14004.18113 16467.89238 18172.78439 25872.85747 22486.13408 23491.91845 26543.98834 29253.7876 7409.065057 5563.708795 2.517058611 2.959876763 3.266307613 4.650289658 4.04157279 4.222348673 4.770916184 5.257965266 1.331677363 1 12.4418312 -6.80383849 0.256352867 0.538697362 5.931137483 0.950656472 0.306284386 0.318959583 0.063235421 0.390548386 0.651452925 1.57E-07 6.80383849 5.39244012 MPLYEGLGS(ph)GGEK ddPTM_HeLa_CUDC101_4h_R1 2 MPLYEGLGSGGEK 13 0 G3V4K6;G3V524;G3V2Q5;G3V5Y4;F6S9Y6;Q9NZ32 G3V4K6 ACTR10 Actin-related protein 10 1 0 MPLY(0.001)EGLGS(0.999)GGEK;MPLY(0.001)EGLGS(0.999)GGEK ; 96.034 0.012306 98980000 2847.9 2974.2 2593.6 2878.3 2909.9 3024.4 2860.6 2513.4 2323.11 3181.8 TRUE FALSE FALSE 2514.073479 3065.831577 2733.817861 2995.689515 2695.242474 2966.714609 2970.9343 2799.515296 2227.350423 3162.874512 0.794869815 0.96931812 0.864345977 0.947141438 0.852149671 0.937980498 0.939314629 0.88511741 0.704217133 1 11.6270206 VVYIFGPPVK ddPTM_HeLa_CUDC101_4h_R1 2 VVYIFGPPVK 10 0 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 0 0 ; ; 117.16 0.021133 351090 629.83 423.95 576.6 549.11 511.45 487.56 349.31 420.45 568.07 442.72 FALSE FALSE TRUE 556.0022822 437.011397 607.7727401 571.5050793 473.7213525 478.2606053 362.7830037 468.3123285 544.6539142 440.0866818 1.263392657 0.993012093 1.381029614 1.298619347 1.076427377 1.086741829 0.824344427 1.064136562 1.237605992 1 8.781643902 -4.945412503 6.018195605 1.14514557 0.943684004 0.305139118 0.134005705 0.212672431 16.34020886 0.02053162 0.062756705 1.13E-05 4.945412503 -0.201461566 VWAHYEEQPVEEVMPVLEEK ddPTM_HeLa_CUDC101_4h_R1 1 VWAHYEEQPVEEVMPVLEEK 20 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 0 114.9 7.20E-05 2792600 962.9 869.52 626.39 760.52 806.51 614.16 974.13 779.59 897.21 1010 FALSE FALSE TRUE 850.0303217 896.3088806 660.2545381 791.5372928 747.0153641 602.4459213 1011.70252 868.3353744 860.226624 1003.992475 0.846650092 0.89274462 0.657628971 0.788389667 0.744044784 0.600050236 1.007679386 0.864882353 0.856805848 1 9.971532741 -8.390011061 0.634895853 0.993548221 0.786191548 0.141867972 0.116499367 0.620622679 0.532200441 0.059825105 0.028418808 4.07E-09 8.390011061 -0.207356673 VWDYETGDFER ddPTM_HeLa_CUDC101_4h_R1 1 VWDYETGDFER 11 0 P43034 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha 0 0 114.51 0.03155 17040000 797.23 754.53 982.95 896.14 1014.3 672.61 788.24 755.07 929.16 725.02 FALSE FALSE TRUE 703.7799079 777.776175 1036.09125 932.6884626 939.4771098 659.7810849 818.6426808 841.0241167 890.8596315 720.7075488 0.976512469 1.079184166 1.437602883 1.294128893 1.303548314 0.915462986 1.135887479 1.166942289 1.23609033 1 9.493270146 -6.993788792 24.96618362 0.990958111 1.205272227 0.101843168 0.149058475 129.349581 519922.0047 0.021513695 0.028233378 1.01E-07 6.993788792 0.214314116 VWEDGEHPAK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 VWEDGEHPAKK 11 1 F5H168;Q9Y606-2;Q9Y606;F5GY32;F8W9U5;F5H1B2;F5GXL3;G8JLB3 F5H168 PUS1 "tRNA pseudouridine synthase A, mitochondrial;tRNA pseudouridine synthase" 0 1 VWEDGEHPAK(1)K 95.483 0.01196 1433700 2743.3 2524.3 2511.9 2440.2 2841.5 2546.7 3084.4 3427.4 2682.4 2636.9 FALSE TRUE FALSE 2421.734533 2602.070691 2647.700912 2539.721903 2631.888206 2498.125941 3203.366341 3817.561362 2571.830337 2621.215602 0.923897497 0.992696171 1.010104209 0.96890996 1.004071624 0.953041001 1.222091895 1.456408759 0.981159404 1 11.35602031 -4.496291138 2.287760429 0.970383846 1.478270726 0.961809957 0.030329626 0.058135146 0.488928401 0.005192443 0.048012904 3.19E-05 4.496291138 0.50788688 MPPLIADS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 MPPLIADSPK 10 0 A0A087WXX9;P54646 A0A087WXX9 PRKAA2 5-AMP-activated protein kinase catalytic subunit alpha-2 1 0 MPPLIADS(1)PK;MPPLIADS(1)PK ; 112.5 0.0074425 35683000 2282.3 2641.1 2291.2 2236.84 2488.6 2114.46 2313.1 2130.1 2112.2 2348.5 TRUE FALSE FALSE 2014.772254 2722.469161 2415.069203 2328.068004 2305.020936 2074.130198 2402.317042 2372.581974 2025.134222 2334.531018 0.863030835 1.166173908 1.034498657 0.997231558 0.987359311 0.888456903 1.029036249 1.016299186 0.8674694 1 11.18891704 VWLDPNETNEIANANSR ddPTM_HeLa_CUDC101_4h_R1 1 VWLDPNETNEIANANSR 17 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 0 118.76 0.0017562 8043600 1735.1 1409.7 1070.3 1552.3 1284.5 1254.3 1417.2 1310.2 1491.1 1541.7 FALSE FALSE TRUE 1531.714208 1453.131186 1128.163655 1615.609504 1189.744994 1230.376317 1471.861879 1459.347872 1429.636227 1532.5299 0.999467748 0.948191083 0.73614463 1.054210756 0.776327427 0.802840008 0.960413157 0.952247569 0.932860251 1 10.58169951 -6.994726416 24.99889564 0.998384495 0.880194903 0.182286795 0.091503003 133.7706092 634121.143 0.013510945 0.017725585 1.01E-07 6.994726416 -0.118189592 VWQVTIGTR ddPTM_HeLa_CUDC101_4h_R1 2 VWQVTIGTR 9 0 D6RAC2;P63244;H0YAF8;J3KPE3;D6RF23;H0Y8R5;D6RHH4;D6RHJ5 D6RAC2 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed" 0 0 ; ; 140.35 0.019236 6979100 1226.81 1009.53 556.28 848.9 985.4 928.31 967.31 912.16 904.64 520.95 FALSE FALSE TRUE 1083.005192 1040.632423 586.3541795 883.5218113 912.7090052 910.6040334 1004.619471 1015.996607 867.3503563 517.8513662 2.091343698 2.009519508 1.13228277 1.706130115 1.762492222 1.758427404 1.93997648 1.961946368 1.67490213 1 9.016394265 -9.433960275 1.133333581 0.994572763 1.8078619 0.12821286 0.322808789 0.300812654 0.683804944 0.194393692 0.047404523 3.68E-10 9.433960275 0.813289137 MSDTGS(ph)PGMQR ddPTM_HeLa_CUDC101_4h_R1 2 MSDTGSPGMQR 11 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 0 MSDT(0.052)GS(0.948)PGMQR;MS(0.054)DT(0.004)GS(0.941)PGMQR ; 166.11 3.44E-05 189598000 7255.8 6023.2 5872.4 6060 5776.9 5765.1 6029.8 6114.9 6004.9 6199.3 TRUE FALSE FALSE 6405.286123 6208.767653 6189.879707 6307.152994 5350.749596 5655.140323 6262.371406 6810.995499 5757.37548 6162.426288 1.039409775 1.007519987 1.004454969 1.023485345 0.868286182 0.917680806 1.016218469 1.105245756 0.934270888 1 12.58928277 MSESPT(ph)PCSGSSFEETEALVNTAAK ddPTM_HeLa_CUDC101_4h_R1 1 MSESPTPCSGSSFEETEALVNTAAK 25 0 H0Y911;Q4VXL4;D6RAA5;Q4VXL8;E7EMZ9;E9PBC6;O95359-2;O95359-6;O95359-1;O95359-5;O95359-3;O95359 H0Y911 TACC2 Transforming acidic coiled-coil-containing protein 2 1 0 MS(0.064)ES(0.385)PT(0.433)PCS(0.028)GS(0.045)S(0.045)FEETEALVNTAAK 78.428 0.00022476 24023000 5392.3 4794.1 3982.1 3612.8 4754.5 4418.3 4488.2 3681.1 4711.1 4275.4 TRUE FALSE FALSE 4760.222768 4941.800539 4197.384371 3760.1456 4403.770007 4334.028289 4661.311377 4100.141544 4516.906464 4249.969731 1.120060393 1.162784879 0.987626886 0.884746442 1.036188558 1.019778625 1.096786959 0.964746058 1.06280909 1 12.05323685 VWYVSNIDGTHIAK ddPTM_HeLa_CUDC101_4h_R1 1 VWYVSNIDGTHIAK 14 0 K7EQ48;A0A2U3TZU2;P06744;A0A0J9YXP8;A0A0J9YYH3;A0A2R8Y6C7;P06744-2;K7EPY4;A0A0J9YX90;K7ENA0 K7EQ48 GPI Glucose-6-phosphate isomerase 0 0 156.52 6.48E-05 13023000 1083.7 617.88 676.46 683.46 989.33 1021.1 986.36 837.49 1024.5 1203.9 FALSE FALSE TRUE 956.6703288 636.9161504 713.0314738 711.334453 916.3490969 1001.624219 1024.404236 932.8264763 982.2696764 1196.739149 0.799397537 0.532209672 0.59581194 0.594393902 0.765704955 0.836961187 0.85599626 0.779473519 0.820788454 1 10.22489301 -8.339750287 1.048160521 0.967879873 0.717134927 0.277281222 0.115514909 0.310158851 0.703465549 0.037973106 0.024991257 4.57E-09 8.339750287 -0.250744946 MSIT(ph)Y(ph)VNR ddPTM_HeLa_CUDC101_4h_R1 1 MSITYVNR 8 0 Q8NCQ7-3 Q8NCQ7-3 2 0 MS(0.01)IT(0.994)Y(0.995)VNR 43.308 0.0033385 0 0 0 0 0 56.678 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 52.49697686 0 0 0 0 0 0 MSLPKT(ph)PSTPLNST(ph)S(ph)T(ph)SESKK ddPTM_HeLa_CUDC101_4h_R1 1 MSLPKTPSTPLNSTSTSESKK 21 2 A6H900;Q5T1B0;D6R9B7 A6H900 C1orf125;AXDND1 Axonemal dynein light chain domain-containing protein 1 4 0 MS(0.2)LPKT(0.538)PS(0.131)T(0.131)PLNS(0.049)T(0.875)S(0.619)T(0.619)S(0.619)ES(0.218)KK 49.708 0.0027025 0 382.83 361.3 429.82 262.97 518.55 421.62 400.96 402.45 369.9 411.28 TRUE FALSE FALSE 337.9552477 372.4312248 453.0573693 273.6950533 480.2975996 413.578301 416.4251615 448.2632812 354.6525654 408.8336883 0.826632583 0.910960215 1.108170345 0.669453279 1.174799468 1.011605239 1.01856861 1.09644409 0.867473928 1 8.67537027 MSMNS(ph)KQPHFAMHPT(ph)LPEHK ddPTM_HeLa_CUDC101_4h_R1 1 MSMNSKQPHFAMHPTLPEHK 20 1 Q01851 Q01851 POU4F1 "POU domain, class 4, transcription factor 1" 2 0 MS(0.047)MNS(0.954)KQPHFAMHPT(0.999)LPEHK 48.314 0.003028 0 813.11 699.19 622.45 970.35 901.52 836.55 717.3 690.87 822.94 729.89 TRUE FALSE FALSE 717.7984784 720.7312152 656.1015298 1009.925067 835.0166657 820.5942025 744.9665013 769.5158482 789.0180649 725.5485818 0.989318285 0.99336038 0.904283388 1.391946856 1.150876298 1.130998286 1.026763087 1.060598653 1.087477923 1 9.502928408 VYNVTQHAVGIVVNK ddPTM_HeLa_CUDC101_4h_R1 1 VYNVTQHAVGIVVNK 15 0 G3V1B3;M0R181;P46778 G3V1B3 RPL21 60S ribosomal protein L21 0 0 141.54 0.0024091 1195800 1095.6 1088.9 1077.3 1213.4 1256.2 1123.1 1082.6 1324.9 1300.3 1045.7 FALSE FALSE TRUE 967.1754288 1122.447718 1135.542097 1262.887697 1163.532629 1101.678739 1124.356245 1475.721261 1246.701084 1039.48013 0.930441478 1.079816426 1.092413471 1.214922403 1.119340904 1.059836265 1.081652465 1.419672409 1.199350567 1 10.02164647 -6.899793268 1.998719807 0.967501811 1.161308979 0.089208802 0.12180953 0.213590671 1.727114872 0.016367277 0.02225738 1.26E-07 6.899793268 0.193807167 VYQSLCPTSWVTDWDEQR ddPTM_HeLa_CUDC101_4h_R1 1 VYQSLCPTSWVTDWDEQR 18 0 P14854 P14854 COX6B1 Cytochrome c oxidase subunit 6B1 0 0 137.46 0.00041212 6345600 2628.7 2038.6 1692.4 2043.9 2349.5 1939.5 1900.2 1471.8 2064.4 972.17 FALSE FALSE TRUE 2320.567771 2101.40685 1783.896263 2127.259076 2176.182066 1902.507269 1973.491351 1639.343763 1979.304558 966.3874896 2.401280848 2.174497158 1.845943043 2.201248567 2.251873176 1.96867953 2.042132552 1.696362774 2.048147953 1 9.916457968 -9.377134756 1.043593394 0.985161595 2.098232953 0.016036758 0.371516747 0.186449912 0.355586046 0.155886123 0.038080431 4.20E-10 9.377134756 1.113071358 VYQWDDPDPR ddPTM_HeLa_CUDC101_4h_R1 2 VYQWDDPDPR 10 0 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 0 ; ; 124.23 0.021065 38854000 7399.9 6299.3 6419.8 5418.4 6632.7 6764 5460.7 5536.5 5861 5445 FALSE FALSE TRUE 6532.49494 6493.373966 6766.873807 5639.385772 6143.418935 6634.98797 5671.321028 6166.752781 5619.407099 5412.612898 1.206902297 1.199674554 1.250204649 1.041897117 1.135019084 1.225838259 1.047797272 1.139330098 1.038205984 1 12.4021095 -9.386224164 1.115179192 1.000154798 1.158587182 0.396133241 0.066999974 0.376306354 0.838371791 0.046034902 0.011854651 4.11E-10 9.386224164 0.158432384 MSSQS(ph)S(ph)S(ph)LSEACSR ddPTM_HeLa_CUDC101_4h_R1 1 MSSQSSSLSEACSR 14 0 O00141-5 O00141-5 SGK1 Serine/threonine-protein kinase Sgk1 3 0 MS(0.167)S(0.206)QS(0.716)S(0.689)S(0.675)LS(0.548)EACSR 72.891 0.040116 53426000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 MT(ph)DEVER ddPTM_HeLa_CUDC101_4h_R1 1 MTDEVER 7 0 C9JKA9;Q9NS87-2;Q9NS87;Q9NS87-3;H7BZT2 C9JKA9 KIF15 Kinesin-like protein KIF15 1 0 MT(1)DEVER 77.058 0.018629 11651000 143.52 65.472 148.75 0 0 0 0 153.47 0 0 TRUE FALSE FALSE 126.6968032 67.48911472 156.7918749 0 0 0 0 170.9404045 0 0 0 MVARATPGRGEVES(ph)DKSVAASGAGK ddPTM_HeLa_CUDC101_4h_R1 1 MVARATPGRGEVESDKSVAASGAGK 25 3 Q8N9V7 Q8N9V7 TOPAZ1 Testis- and ovary-specific PAZ domain-containing protein 1 1 0 MVARAT(0.156)PGRGEVES(0.844)DKSVAASGAGK 58.366 0.027911 67437000 3855.2 3493.2 4361.5 3562.4 4272.2 3906.2 3667.7 3605.2 4103 4118.2 TRUE FALSE FALSE 3403.2993 3600.821352 4597.295883 3707.69007 3957.048317 3831.695743 3809.164418 4015.601395 3933.872603 4093.704763 0.831349474 0.879599668 1.123015984 0.905705293 0.966617904 0.935997089 0.930493193 0.980921104 0.960956598 1 11.99919134 MYPESTTGS(ph)PAR ddPTM_HeLa_CUDC101_4h_R1 4 MYPESTTGSPAR 12 0 A0A590UJ15;A0A590UJK5;A0A5F9UN28;A0A590UJJ4;K7EKU4;K7EIR5;A0A590UJU4;Q5TG84;A0A590UJU1;A0A590UJY1;A0A590UK89;Q5TG78;A0A590UJX9;A0A590UJV4;A0A590UJ72;A0A590UJI8;Q13303-2;Q13303;Q13303-5 A0A590UJ15 KCNAB2 Voltage-gated potassium channel subunit beta-2 1 0 MYPES(0.001)T(0.005)T(0.095)GS(0.898)PAR;MYPEST(0.001)T(0.005)GS(0.994)PAR;MYPESTT(0.006)GS(0.994)PAR;MYPES(0.006)T(0.013)T(0.231)GS(0.75)PAR ;;; 157.03 0.00017153 158602000 6762.2 5330.94 6360.92 5563.68 6589.87 6074.43 4842.35 5464.97 6901.41 5752.01 TRUE FALSE FALSE 5969.545167 5495.179943 6704.810576 5790.590919 6103.748419 5958.570368 5029.121062 6087.080095 6616.930959 5717.796789 1.044028913 0.961065974 1.172621348 1.01273115 1.067500061 1.042109503 0.879555753 1.064584895 1.157251858 1 12.48124363 NFDNS(ph)S(ph)QNT(ph)TASVS(ph)S(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 NFDNSSQNTTASVSSK 16 0 Q12836 Q12836 ZP4 Zona pellucida sperm-binding protein 4;Processed zona pellucida sperm-binding protein 4 5 0 NFDNS(0.998)S(0.998)QNT(0.98)T(0.117)AS(0.117)VS(0.822)S(0.969)K 45.014 0.034812 4572600 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 NKPRPPPLSPLGGPVPSALPNGPPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 NKPRPPPLSPLGGPVPSALPNGPPSPR 27 2 Q15642 Q15642 TRIP10 Cdc42-interacting protein 4 1 0 NKPRPPPLSPLGGPVPS(0.007)ALPNGPPS(0.992)PR;NKPRPPPLSPLGGPVPSALPNGPPS(1)PR ; 111.33 4.36E-08 38065000 1856 1496.31 1382.06 1697.1 1542.58 1452.38 1450.69 1580.39 1629.66 1496.17 TRUE FALSE FALSE 1638.442494 1542.409538 1456.778344 1766.315073 1428.786947 1424.678271 1506.643599 1760.295209 1562.484725 1487.270714 1.101643754 1.037073831 0.979497767 1.187621767 0.96067712 0.95791456 1.013025796 1.183574176 1.050571836 1 10.53845156 WAAEK(ac)LEK ddPTM_HeLa_CUDC101_4h_R1 2 WAAEKLEK 8 1 Q8NEY8;F8W6A0;F8W0Q9;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;F8WF16;B7Z8L1;Q8NEY8-5;Q8NEY8-6;Q8NEY8-7 Q8NEY8 PPHLN1 Periphilin-1 0 1 ; WAAEK(1)LEK;WAAEK(1)LEK 103.55 0.010418 1566900 1774.92 1618.03 1150.41 1474.27 1320.5 1095.78 1116.99 1443.87 1163.73 1437.74 FALSE TRUE FALSE 1566.866568 1667.879586 1212.604644 1534.397103 1223.089346 1074.879822 1160.072678 1608.234324 1115.760557 1429.188259 1.096333222 1.167011817 0.848456904 1.073614406 0.855793027 0.752091137 0.811700398 1.125278153 0.7806953 1 10.48098025 -6.140526311 1.430642522 1.050545961 0.879267593 0.009171573 0.148693177 0.400361605 1.611626177 0.019610328 0.039150602 7.24E-07 6.140526311 -0.171278368 NLSLTDFVGDESPS(ph)PER ddPTM_HeLa_CUDC101_4h_R1 1 NLSLTDFVGDESPSPER 17 0 E9PDC2;A0A088AWP5;Q8WUY3-4;Q8WUY3;Q8WUY3-2;Q8WUY3-3 E9PDC2 PRUNE2 Protein prune homolog 2 1 0 NLSLTDFVGDES(0.128)PS(0.872)PER 248.94 5.47E-56 7430600 1059.7 1108.3 755.42 815.4 987.78 875.91 855.21 831.5 1024.4 945.02 TRUE FALSE FALSE 935.4835724 1142.445409 796.2602902 848.6555365 914.9134373 859.2034761 888.1957362 926.154599 982.1737984 939.398979 0.995832009 1.21614504 0.847627375 0.90340266 0.973934886 0.914631052 0.945493615 0.985901219 1.045534241 1 9.875594215 WAEYHADIYDK ddPTM_HeLa_CUDC101_4h_R1 4 WAEYHADIYDK 11 0 Q9NRX4-2;Q9NRX4 Q9NRX4-2 PHPT1 14 kDa phosphohistidine phosphatase 0 0 ;;; ;;; 166.97 3.53E-10 35459000 23549.4 18882.9 18165.2 20207.2 19481.8 18071.7 16486.6 17620.5 19357.6 20763.5 FALSE FALSE TRUE 20788.97503 19464.65977 19147.26566 21031.33696 18044.66643 17727.01243 17122.49368 19626.3465 18559.67153 20639.99778 1.007217891 0.943055323 0.9276777 1.018960234 0.874257188 0.858866974 0.829578272 0.950888983 0.899208989 1 14.3331552 -6.043760921 0.794284824 1.001946135 0.868124469 0.192605716 0.05581085 0.345187995 0.417589816 0.008348242 0.023744332 9.04E-07 6.043760921 -0.133821666 NMGGPYGGGNYGPGGS(ph)GGSGGYGGR ddPTM_HeLa_CUDC101_4h_R1 1 NMGGPYGGGNYGPGGSGGSGGYGGR 25 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 0 NMGGPYGGGNYGPGGS(0.939)GGS(0.061)GGYGGR 127.74 5.52E-10 9647800 2639.2 2476.3 2918.4 2861.6 2393.2 2831.4 2495.8 2503.8 2796.1 2987.9 TRUE FALSE FALSE 2329.836977 2552.591868 3076.177532 2978.308417 2216.658404 2777.395762 2592.063842 2788.822471 2680.843575 2970.127838 0.784423131 0.859421549 1.035705431 1.002754285 0.746317507 0.935109838 0.872711204 0.938957049 0.902602083 1 11.53630931 NNLPIS(ph)IS(ph)S(ph)NVS(ph)IS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 NNLPISISSNVSISR 15 0 A0A0A0MTS7;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12;A0A0A0MRA3;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9 A0A0A0MTS7 TTN Titin 5 0 NNLPIS(1)IS(1)S(1)NVS(1)IS(1)R 50.358 0.035571 8127300 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 NQPTVYIAAS(ph)PPNTDELMSR ddPTM_HeLa_CUDC101_4h_R1 2 NQPTVYIAASPPNTDELMSR 20 0 A0A1B0GV57;Q9NYJ8;Q9NYJ8-2 A0A1B0GV57 TAB2 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 1 0 NQPTVYIAAS(0.932)PPNT(0.067)DELMSR;NQPT(0.003)VY(0.018)IAAS(0.964)PPNT(0.014)DELMSR ; 230.62 3.13E-35 36442000 2472.94 2788.9 2046.06 2109.98 2613.9 2879.5 2747.3 1576.72 2308.45 2305.13 TRUE FALSE FALSE 2183.065722 2874.822703 2156.676193 2196.034105 2421.077805 2824.578335 2853.264281 1756.207431 2213.294714 2291.418984 0.952713466 1.254603686 0.94119679 0.958373008 1.05658451 1.232676501 1.245195358 0.766427896 0.965905724 1 11.16202556 NQS(ph)FCPTVNLDK ddPTM_HeLa_CUDC101_4h_R1 1 NQSFCPTVNLDK 12 0 P46776;E9PLL6;E9PJD9 P46776 RPL27A 60S ribosomal protein L27a 1 0 NQS(0.976)FCPT(0.024)VNLDK 150.12 0.00062376 24424000 2621 2708.7 1830.4 2002.5 2264.9 2523.9 2537.8 1965.9 1977.8 2400.8 TRUE FALSE FALSE 2313.770353 2792.151836 1929.356961 2084.170606 2097.822839 2475.760813 2635.683796 2189.69011 1896.274247 2386.519935 0.969516458 1.16996795 0.808439491 0.873309531 0.879030093 1.037393728 1.104404685 0.917524332 0.794577166 1 11.22069267 NQSFCPT(ph)VNLDK ddPTM_HeLa_CUDC101_4h_R1 1 NQSFCPTVNLDK 12 0 P46776;E9PLL6;E9PJD9 P46776 RPL27A 60S ribosomal protein L27a 1 0 NQS(0.108)FCPT(0.892)VNLDK 146.59 0.0043146 21859000 2700.4 2439.9 1563.1 2077.6 1906.8 2349.6 2440.2 1939.7 2000.7 2258.3 TRUE FALSE FALSE 2383.863206 2515.070427 1647.605914 2162.333508 1766.139163 2304.785295 2534.319331 2160.507607 1918.230299 2244.867531 1.061917094 1.12036474 0.733943492 0.963234346 0.786745382 1.026691002 1.128939368 0.962420979 0.854495988 1 11.1324146 NRENS(ph)SPCQGNGEQAGR ddPTM_HeLa_CUDC101_4h_R1 1 NRENSSPCQGNGEQAGR 17 1 Q5T5X7 Q5T5X7 BEND3 BEN domain-containing protein 3 1 0 NRENS(0.96)S(0.04)PCQGNGEQAGR 96.489 0.000603 0 0 65.912 0 0 0 69.997 66.542 67.624 0 0 TRUE FALSE FALSE 0 67.9426706 0 0 0 68.66192385 69.10854723 75.32204281 0 0 0 NRS(ph)AEEGELAESK ddPTM_HeLa_CUDC101_4h_R1 2 NRSAEEGELAESK 13 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 0 NRS(1)AEEGELAESK;NRS(1)AEEGELAESK ; 177.39 7.89E-07 278310000 11930.6 11370.3 11180.8 11100.5 12439.4 10925 11534 12686.7 10682.3 11080.8 TRUE FALSE FALSE 10532.11315 11720.60547 11785.26787 11553.22637 11521.77024 10716.62383 11978.87024 14130.90265 10241.97107 11014.89091 0.956170446 1.064069137 1.06993959 1.048873427 1.046017645 0.972921467 1.087516013 1.28289084 0.929829551 1 13.42716759 WCNEHLK ddPTM_HeLa_CUDC101_4h_R1 2 WCNEHLK 7 0 P21333-2;P21333;Q60FE5;A0A087WWY3;F8WE98;O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;O75369-5;O75369-4;Q14315-2;Q14315 P21333-2;O75369-8;Q14315-2 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C 0 0 ; ; 98.629 0.021724 58715000 23720 13792.9 9061.7 15966.2 12932.4 13109.9 12169.5 10138 9229.7 4315.4 FALSE FALSE TRUE 20939.57756 14217.8429 9551.602912 16617.37065 11978.40262 12859.8505 12638.88169 11292.06894 8849.247859 4289.731809 4.881325568 3.314389695 2.226620063 3.873755141 2.792343007 2.997821559 2.946310458 2.632348465 2.062890701 1 12.06667174 -9.600489627 1.415126256 1.007069566 3.41049739 0.386435822 0.779270475 0.268945294 0.970954769 0.605340763 0.141712267 2.51E-10 9.600489627 2.403427824 NS(ph)GVNYLILDDDDR ddPTM_HeLa_CUDC101_4h_R1 1 NSGVNYLILDDDDR 14 0 O75815;O75815-3;O75815-2 O75815 BCAR3 Breast cancer anti-estrogen resistance protein 3 1 0 NS(1)GVNYLILDDDDR 94.973 0.010426 19929000 386.07 317.42 187.39 206.24 302.93 256.89 344.77 331.83 391.34 287.1 TRUE FALSE FALSE 340.8154598 327.199334 197.5208702 214.6513586 280.5834574 251.9902513 358.0678944 369.6041859 375.2087996 285.3923164 1.194199844 1.146489639 0.692102971 0.752127322 0.983150005 0.882960881 1.254651488 1.29507406 1.314712338 1 8.156802684 WDAADDIHR ddPTM_HeLa_CUDC101_4h_R1 2 WDAADDIHR 9 0 Q9HD15;R4GMW4 Q9HD15 SRA1 Steroid receptor RNA activator 1 0 0 ; ; 137.95 0.0019772 28333000 18518.6 16411.2 15642.4 15789.8 16644.3 14680.7 14697 15505.2 15293.4 14510.4 FALSE FALSE TRUE 16347.87778 16916.80962 16488.07546 16433.77629 15416.48315 14400.69011 15263.86821 17270.24929 14662.99958 14424.0915 1.133373134 1.1728163 1.143092823 1.139328345 1.068800982 0.998377618 1.058220424 1.197319727 1.016563129 1 13.81619283 -9.277286679 1.040142778 1.000925665 1.111224409 0.361733829 0.055797608 0.489680383 0.961283806 0.038748816 0.010844155 5.28E-10 9.277286679 0.110298744 WDDPYYDIAR ddPTM_HeLa_CUDC101_4h_R1 1 WDDPYYDIAR 10 0 E9PNR6;H0YE29;Q07960 E9PNR6 ARHGAP1 Rho GTPase-activating protein 1 0 0 128.6 0.015118 19942000 3790 2804.4 2694.5 2626 3290.6 3011.1 2781.3 2638.5 3021.8 2788.6 FALSE FALSE TRUE 3345.741945 2890.80024 2840.17282 2733.099631 3047.858994 2953.668284 2888.575673 2938.856175 2897.240125 2772.013283 1.20697183 1.042852232 1.02458846 0.985961953 1.099510963 1.065531793 1.042049723 1.060188345 1.045175412 1 11.43671846 NS(ph)HQNKGHY(ph)QNVVEVREEHSSK ddPTM_HeLa_CUDC101_4h_R1 1 NSHQNKGHYQNVVEVREEHSSK 22 2 P04279-2;P04279 P04279-2 SEMG1 Semenogelin-1;Alpha-inhibin-92;Alpha-inhibin-31;Seminal basic protein 2 0 NS(1)HQNKGHY(1)QNVVEVREEHSSK 58.997 0.0081442 9476500 474.81 355.03 409.44 304.89 605.37 436.63 344.1 379.23 429.22 417.58 TRUE FALSE FALSE 419.1534916 365.9680535 431.5755649 317.324732 560.7130612 428.3020102 357.3720523 422.4000103 411.5273699 415.0962156 1.009774302 0.881646326 1.039700071 0.764460672 1.350802633 1.031813816 0.860937871 1.017595426 0.991402365 1 8.697301969 NT(ph)PMRPRS(ph)RSLS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 1 NTPMRPRSRSLSPGR 15 3 O15021;O15021-2;O15021-3;O15021-6;C9J249;D6RAK1 O15021 MAST4 Microtubule-associated serine/threonine-protein kinase 4 3 0 NT(1)PMRPRS(1)RS(0.334)LS(0.666)PGR 62.633 0.0030319 0 645.39 732.65 616.87 782.36 529.71 657.34 658.95 743.92 657.19 781.28 TRUE FALSE FALSE 569.7383625 755.2220781 650.2198581 814.2680224 490.6343486 644.8023347 684.3659222 828.6048458 630.10035 776.6329118 0.73360059 0.972431205 0.837229337 1.04845933 0.631745502 0.830253682 0.881196138 1.066919562 0.811323265 1 9.601089036 NVDNAEGS(ph)DTDY ddPTM_HeLa_CUDC101_4h_R1 2 NVDNAEGSDTDY 12 0 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 0 NVDNAEGS(0.994)DT(0.005)DY(0.001);NVDNAEGS(0.903)DT(0.097)DY ; 107.65 0.0063448 24775000 9827 6727 6187.9 6356.7 7128.7 7963.7 7053.9 6272.5 6225.1 6209.8 TRUE FALSE FALSE 8675.093957 6934.250897 6522.436591 6615.953702 6602.830003 7811.805691 7325.971286 6986.536046 5968.498743 6172.863833 1.405359682 1.123344218 1.056630564 1.071780276 1.069654245 1.265507535 1.186802671 1.131814379 0.966892986 1 12.59172425 NVPCS(ph)HR ddPTM_HeLa_CUDC101_4h_R1 1 NVPCSHR 7 0 Q9HCM2 Q9HCM2 PLXNA4 Plexin-A4 1 0 NVPCS(1)HR 97.635 0.024646 2096900 0 0 0 57.67 0 0 0 0 142.66 0 TRUE FALSE FALSE 0 0 0 60.02203187 0 0 0 0 136.7794944 0 0 PMGAQT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 PMGAQTK 7 0 Q6ZS81-5;Q6ZS81-4;Q6ZS81 Q6ZS81-5 WDFY4 WD repeat- and FYVE domain-containing protein 4 1 0 PMGAQT(1)K 95.741 0.037839 19178000 3510.1 2974.2 3120.3 2942.7 3477.4 3184.3 2786.2 3155.1 3080.5 3212.4 TRUE FALSE FALSE 3098.651399 3065.831577 3288.992856 3062.716025 3220.87913 3123.564783 2893.664667 3514.263831 2953.520486 3193.292502 0.970362532 0.960084795 1.029969179 0.95910914 1.008638929 0.978164318 0.906169624 1.100514227 0.924913858 1 11.64082899 PSST(ph)GPPLPPAS(ph)PSAT(ph)S(ph)RR ddPTM_HeLa_CUDC101_4h_R1 1 PSSTGPPLPPASPSATSRR 19 1 O95155;O95155-4 O95155 UBE4B Ubiquitin conjugation factor E4 B 4 0 PS(0.034)S(0.035)T(0.953)GPPLPPAS(0.498)PS(0.499)AT(0.989)S(0.991)RR 46.592 0.037465 496880 0 0 0 0 0 72.445 157.16 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 71.06323233 163.2217138 0 0 0 0 PSSWLSLS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 PSSWLSLSPR 10 0 Q9P2D7-8 Q9P2D7-8 1 0 PSSWLSLS(1)PR 93.374 0.023444 18964000 108.92 0 0 0 0 54.133 0 103.75 112.49 0 TRUE FALSE FALSE 96.15256271 0 0 0 0 53.10050322 0 115.5604806 107.8531146 0 0 PT(ph)AEQPELAEEFT(ph)EKR ddPTM_HeLa_CUDC101_4h_R1 1 PTAEQPELAEEFTEKR 16 1 Q5RHP9-2;Q5RHP9 Q5RHP9-2 ERICH3 Glutamate-rich protein 3 2 0 PT(1)AEQPELAEEFT(1)EKR 72.321 0.020233 5433300 122.64 0 0 61.77 0 65.397 0 0 191.15 0 TRUE FALSE FALSE 108.2643251 0 0 64.28924759 0 64.14966118 0 0 183.2707161 0 0 PYLSSPLRAPS(ph)EES(ph)QDYYHK ddPTM_HeLa_CUDC101_4h_R1 1 PYLSSPLRAPSEESQDYYHK 20 1 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;Q96L91-4 Q96L91-3 EP400 E1A-binding protein p400 2 0 PY(0.001)LS(0.032)S(0.032)PLRAPS(0.934)EES(0.705)QDY(0.147)Y(0.147)HK 56.25 0.036277 13647000 131.21 0 44.783 0 63.382 58.165 0 68.309 0 0 TRUE FALSE FALSE 115.8297627 0 47.20410444 0 58.70643613 57.05559953 0 76.08502045 0 0 0 WDLPDSDWDNDSSSAR ddPTM_HeLa_CUDC101_4h_R1 2 WDLPDSDWDNDSSSAR 16 0 O15020-2;O15020;A4QPE4;E9PJZ2 O15020-2 SPTBN2 "Spectrin beta chain, non-erythrocytic 2" 0 0 ; ; 172.58 3.19E-06 19667700 4787.5 3608.3 3612.9 3155.7 4138.5 3717.8 3493 3685.4 3940.6 3996.3 FALSE FALSE TRUE 4226.316507 3719.467446 3808.224302 3284.403086 3833.2111 3646.889159 3627.72618 4104.931039 3778.1668 3972.52983 1.063885405 0.93629692 0.958639574 0.826778709 0.964929469 0.918026878 0.913203005 1.033329192 0.951073236 1 11.95584234 -7.245538893 22.26762139 1.030168104 0.93212262 0.200527817 0.056565524 130.4939118 182747.9117 0.008498186 0.010381877 5.68E-08 7.245538893 -0.098045484 WDNGPDGRR ddPTM_HeLa_CUDC101_4h_R1 2 WDNGPDGRR 9 1 Q14166;V9GY16 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 0 0 ; ; 134.26 0.0027535 7307100 4647.1 2930.6 3490.8 5414.5 4804.6 3613.2 3881.7 3131.2 3517 2383.8 FALSE FALSE TRUE 4102.373983 3020.888312 3679.523207 5635.326713 4450.17423 3544.28423 4031.418469 3487.643151 3372.027771 2369.621052 1.7312363 1.274840258 1.552789719 2.378155237 1.878010928 1.495717734 1.701292477 1.471814723 1.423024061 1 11.21044065 -9.442432957 0.504595686 0.802836577 1.724524613 0.231057462 0.308289692 1.313926403 0.409400622 0.615677533 0.075976338 3.61E-10 9.442432957 0.921688036 WDPTANEDPEWILVEK ddPTM_HeLa_CUDC101_4h_R1 1 WDPTANEDPEWILVEK 16 0 Q14257;Q14257-2;A8MXP8 Q14257 RCN2 Reticulocalbin-2 0 0 102.9 0.0021053 0 492.17 497.21 467.8 556.37 524.16 467.41 476.68 442.12 443.11 527.12 FALSE FALSE TRUE 434.4785787 512.5284508 493.090683 579.0611734 485.4937611 458.494933 495.0657073 492.4491537 424.8448182 523.9846668 0.829181856 0.978136353 0.94104029 1.105110913 0.926541924 0.875015935 0.944809531 0.939815962 0.810796279 1 9.033380785 QAPGVGAVGGGS(ph)PEREEVGAGYNSEDEYEAAAAR ddPTM_HeLa_CUDC101_4h_R1 2 QAPGVGAVGGGSPEREEVGAGYNSEDEYEAAAAR 34 1 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 0 QAPGVGAVGGGS(0.992)PEREEVGAGY(0.004)NS(0.004)EDEYEAAAAR;QAPGVGAVGGGS(1)PEREEVGAGYNSEDEYEAAAAR ; 89.221 2.34E-09 10632000 1363.44 1563.82 1465.75 1381.74 1147.97 1173.1 1325.3 1620.31 1713.32 1448 TRUE FALSE FALSE 1203.61963 1611.999441 1544.992879 1438.09333 1063.28654 1150.725072 1376.417265 1804.759541 1642.696224 1439.387232 0.836202798 1.11992062 1.073368476 0.999101074 0.738707776 0.799454828 0.95625224 1.253838787 1.141246906 1 10.49123905 QAS(ph)PTEVVER ddPTM_HeLa_CUDC101_4h_R1 2 QASPTEVVER 10 0 C9JW01;Q8TB72-2;Q8TB72-3;Q8TB72;A0A0A0MR59;Q8TB72-4;A0A0C4DG68 C9JW01 PUM2 Pumilio homolog 2 1 0 QAS(0.659)PT(0.341)EVVER;QAS(0.5)PT(0.5)EVVER ; 115.34 0.0063728 107986000 5360.4 4725.9 4879.8 4857.3 4655.9 5045 4326.6 4911 4416.3 5059.6 TRUE FALSE FALSE 4732.062038 4871.499377 5143.616749 5055.401689 4312.443533 4948.775031 4493.478411 5470.048389 4234.258245 5029.505274 0.940860339 0.968584207 1.022688409 1.005148899 0.857428971 0.983948671 0.893423541 1.087591739 0.841883647 1 12.29620078 QDIMPEVDKQS(ph)GSPESR ddPTM_HeLa_CUDC101_4h_R1 1 QDIMPEVDKQSGSPESR 17 1 Q8NI08-2;Q8NI08;Q8NI08-7 Q8NI08-2 NCOA7 Nuclear receptor coactivator 7 1 0 QDIMPEVDKQS(0.626)GS(0.333)PES(0.042)R 209.19 5.52E-23 10594000 1584.2 1265.4 1283.4 1321.5 1391.9 1624.6 1331.5 1505.4 1937.9 1549.4 TRUE FALSE FALSE 1398.502477 1304.385474 1352.784486 1375.396482 1289.22231 1593.613462 1382.856401 1676.768651 1858.018942 1540.1841 0.908009943 0.846902311 0.878326485 0.893007844 0.837057278 1.034690244 0.897851368 1.088680666 1.206361591 1 10.58888709 QDKPLS(ph)PAGSSQEAADTPDTR ddPTM_HeLa_CUDC101_4h_R1 1 QDKPLSPAGSSQEAADTPDTR 21 1 P13994 P13994 CCDC130 Coiled-coil domain-containing protein 130 1 0 QDKPLS(0.974)PAGS(0.013)S(0.013)QEAADTPDTR 80.016 0.00091948 20090000 2258.8 1892.2 2112.7 2013.3 1958.7 1681.8 1741.9 1246.2 2361.4 2150.7 TRUE FALSE FALSE 1994.026888 1950.496439 2226.918953 2095.411076 1814.210603 1649.722467 1809.085666 1388.062371 2264.062093 2137.907541 0.932700246 0.912339005 1.041634828 0.980122403 0.848591704 0.771652859 0.84619453 0.649262115 1.059008423 1 11.06198375 WDVDDWDNENSSAR ddPTM_HeLa_CUDC101_4h_R1 3 WDVDDWDNENSSAR 14 0 A0A087WUZ3;Q01082;Q01082-2;F8W6C1 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ;; ;; 192.15 4.55E-11 54550900 4994.6 3891 3847.1 4060.4 4568.5 4147.5 4027.5 4388.4 4670.8 5052.1 FALSE FALSE TRUE 4409.140559 4010.877098 4055.085863 4226.000663 4231.490857 4068.393348 4182.842024 4887.957717 4478.267647 5022.049885 0.877956345 0.798653377 0.807456309 0.841489185 0.842582402 0.81010612 0.832895356 0.973299316 0.89172106 1 12.29406064 -8.56398005 0.771982474 0.992630787 0.841725849 0.260377995 0.056773675 0.300616071 0.365975236 0.022929035 0.010630499 2.73E-09 8.56398005 -0.150904937 QDSDS(ph)DVVDIEEAEHDFMGEAHPVVFSR ddPTM_HeLa_CUDC101_4h_R1 1 QDSDSDVVDIEEAEHDFMGEAHPVVFSR 28 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 0 QDS(0.244)DS(0.756)DVVDIEEAEHDFMGEAHPVVFSR 69.444 6.53E-05 2438900 266.88 270.75 47.278 267.2 183.24 152.69 148.61 232.26 260.43 109.73 TRUE FALSE FALSE 235.596731 279.0914866 49.83399169 278.0975709 169.7227503 149.7776926 154.3419375 258.6995396 249.6949652 109.0773211 2.159905731 2.558657325 0.456868497 2.549545297 1.555985686 1.373133216 1.414977339 2.371707858 2.289155644 1 6.769207363 WEAERDDWLHNR ddPTM_HeLa_CUDC101_4h_R1 1 WEAERDDWLHNR 12 1 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 0 0 111.86 0.0029931 41461000 6612 6203 5551 6360.3 7245.9 7152 6605.6 6423.7 6569.4 6145.1 FALSE FALSE TRUE 5836.951383 6394.107078 5851.103851 6619.700526 6711.384393 7015.587516 6860.380205 7154.948043 6298.606551 6108.548672 0.955538164 1.046747341 0.957854994 1.083678118 1.098687226 1.1484868 1.123078586 1.171300816 1.031113426 1 12.57661394 -5.949179403 1.333766291 0.981483584 1.146963133 0.782521814 0.033687719 0.110910141 0.392932012 0.004824857 0.011050101 1.12E-06 5.949179403 0.165479549 WEAGIYANQEEEDNE ddPTM_HeLa_CUDC101_4h_R1 2 WEAGIYANQEEEDNE 15 0 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 0 0 ; ; 112.15 0.011876 10101700 5456.1 4734.2 4555.5 3990.8 5611.7 4670.6 4210.4 4669.9 5015.9 4588.1 FALSE FALSE TRUE 4816.544229 4880.055091 4801.78411 4153.562074 5197.736071 4581.516087 4372.796538 5201.50254 4809.142479 4560.809777 1.056072159 1.069997507 1.052835866 0.91070715 1.139652019 1.004540051 0.958776347 1.140477852 1.054449257 1 12.15507428 -4.236040704 23.475395 1.026609307 1.140478182 0.240850445 0.060184613 3587.574736 3315793.033 0.007709691 0.65415944 5.81E-05 4.236040704 0.113868875 WEDRWEWLR ddPTM_HeLa_CUDC101_4h_R1 2 WEDRWEWLR 9 1 A0A087WUZ3;Q01082;Q01082-2;Q01082-3 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 0 0 ; ; 130.66 0.0038958 26644000 7351.7 7094.5 6104.9 6777.1 6428.5 6570.5 6442.5 5597.6 6039.9 6019.6 FALSE FALSE TRUE 6489.94487 7313.073136 6434.94936 7053.499431 5954.282362 6445.17866 6690.989383 6234.808158 5790.932766 5983.795151 1.084586739 1.222146305 1.075395998 1.178766862 0.995067881 1.077105499 1.1181849 1.041948797 0.96776922 1 12.54684507 -8.691657041 1.001924872 1.008217304 1.099475968 0.333145853 0.062711264 0.471698359 0.95086536 0.023768869 0.011862942 2.03E-09 8.691657041 0.091258664 QDVDNAS(ph)LAR ddPTM_HeLa_CUDC101_4h_R1 2 QDVDNASLAR 10 0 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 1 0 QDVDNAS(1)LAR;QDVDNAS(1)LAR ; 118.76 0.0051468 82807000 4456.5 2898.1 4276.1 3183.5 4178.8 3218.4 3350.5 3883.1 3877.1 3936 TRUE FALSE FALSE 3934.115826 2987.387026 4507.2789 3313.33689 3870.538249 3157.014382 3479.729907 4325.136408 3717.284297 3912.588497 1.005502068 0.763532129 1.151994109 0.846840114 0.989252576 0.806886383 0.889367719 1.105441171 0.950083123 1 11.93390767 QEGHLDSES(ph)PTNIPLTK ddPTM_HeLa_CUDC101_4h_R1 2 QEGHLDSESPTNIPLTK 17 0 H7BXC7;Q9H7P9-3;Q9H7P9;E7ESZ3 H7BXC7 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 0 QEGHLDS(0.003)ES(0.995)PT(0.002)NIPLTK;QEGHLDS(0.015)ES(0.978)PT(0.008)NIPLTK ; 102.61 0.0015743 34438000 14030.9 10890.1 11047.5 10900.9 13644.6 11593.3 12234.9 11022.1 13730.3 12447 TRUE FALSE FALSE 12386.21917 11225.61107 11644.76127 11345.48582 12638.06504 11372.17712 12706.80419 12276.81131 13164.33122 12372.96469 1.001071245 0.907269305 0.941145599 0.916957746 1.021425775 0.919114974 1.026981367 0.992228752 1.06395933 1 13.59490361 WEPYDPEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 WEPYDPEKK 9 1 Q14320 Q14320 FAM50A Protein FAM50A 0 1 WEPYDPEK(1)K 97.431 0.01496 349870 780.43 498.18 503.07 304.21 964.38 700.75 768.46 797.65 915.02 529.45 FALSE TRUE FALSE 688.9491785 513.5283353 530.2674859 316.6169987 893.2396087 687.3843613 798.0997596 888.4512518 877.3024883 526.3008079 1.309040701 0.975731611 1.007536903 0.601589422 1.697203568 1.306067464 1.516432709 1.68810543 1.666922177 1 9.039743799 -5.729207564 24.99991002 1.08959503 1.531852063 0.401234808 0.273918229 131.0484064 101644.2366 0.032430903 0.064857832 1.87E-06 5.729207564 0.442257033 QFTELLS(ph)DIGFAREGLR ddPTM_HeLa_CUDC101_4h_R1 1 QFTELLSDIGFAREGLR 17 1 Q6P158;H7C109 Q6P158 DHX57 Putative ATP-dependent RNA helicase DHX57 1 0 QFT(0.264)ELLS(0.736)DIGFAREGLR 56.46 0.033929 59174000 2087.2 1500 1792.2 1755.4 2485.2 2203.7 1652.7 1839.6 2260.4 2071 TRUE FALSE FALSE 1842.54158 1546.213222 1889.091753 1826.992799 2301.871747 2161.668094 1716.445193 2049.012628 2167.225355 2058.6816 0.895010467 0.751069627 0.91762211 0.887457681 1.118129072 1.05002546 0.833759428 0.995303318 1.052724887 1 11.007505 WEWLVNQHR ddPTM_HeLa_CUDC101_4h_R1 1 WEWLVNQHR 9 0 Q9BWJ5 Q9BWJ5 SF3B5 Splicing factor 3B subunit 5 0 0 114.5 0.00054023 0 7936.5 6075.2 4926.4 6215.7 6151.3 6032.1 5276.5 5094.8 5191.6 4527.1 FALSE FALSE TRUE 7006.195501 6262.369711 5192.736086 6469.203113 5697.530854 5917.047743 5480.016373 5674.771438 4977.600051 4500.172608 1.556872616 1.391584336 1.153897092 1.437545551 1.266069405 1.314849064 1.217734707 1.261011951 1.106090918 1 12.13576462 -9.585033207 1.391479602 1.001152326 1.351523939 0.452004932 0.115451348 0.281056239 0.981067956 0.09088313 0.021464487 2.60E-10 9.585033207 0.350371613 WFNGQPIHAELSPVTDFR ddPTM_HeLa_CUDC101_4h_R1 1 WFNGQPIHAELSPVTDFR 18 0 P0DN76;Q01081;Q01081-4;Q01081-2 P0DN76 U2AF1 Splicing factor U2AF 35 kDa subunit 0 0 142.4 8.24E-05 14462000 2518.7 2055.8 1895.3 2060 2821.7 2424.4 2018.3 2161.5 1986.6 2223 FALSE FALSE TRUE 2223.461804 2119.136761 1997.765651 2144.015704 2613.548813 2378.158609 2096.146507 2407.556423 1904.711507 2209.777497 1.006192618 0.958981963 0.904057378 0.970240536 1.182720349 1.07619822 0.948578085 1.089501738 0.861947191 1 11.1096854 WGDEHIPGSPYR ddPTM_HeLa_CUDC101_4h_R1 1 WGDEHIPGSPYR 12 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 106.26 0.0061891 81967000 17953 11457 8479.5 12156 11674 11577 11443 10344 9168.7 5646.1 FALSE FALSE TRUE 15848.57655 11809.97659 8937.927419 12651.77422 10812.83228 11356.18801 11884.36034 11521.51915 8790.762305 5612.516746 2.823791406 2.104221176 1.59249902 2.254206944 1.926556796 2.023368219 2.117474367 2.052825794 1.566278143 1 12.45443213 -6.236755665 24.00009129 1.886877807 2.06614967 0.067207209 0.442779218 2369.578397 2303950.395 0.103799989 0.172069172 5.80E-07 6.236755665 0.179271863 WGDIEFPPPFGR ddPTM_HeLa_CUDC101_4h_R1 2 WGDIEFPPPFGR 12 0 P53396;P53396-2 P53396 ACLY ATP-citrate synthase 0 0 ; ; 150.61 0.0032492 16993200 2641.5 2705.6 2192.69 2291.9 2929.5 2560.4 2342 2007.96 2536.7 2814.2 FALSE FALSE TRUE 2331.867374 2788.956329 2311.233454 2385.373588 2713.396621 2511.564636 2432.331725 2236.53805 2432.136152 2797.461013 0.833565638 0.996959856 0.826189692 0.852692344 0.969949754 0.897801479 0.869478328 0.79948855 0.869408417 1 11.44990231 -9.476422405 1.114720761 1.002644352 0.879762642 0 0.07089743 0.454235161 0.973849699 0.044991971 0.010099863 3.34E-10 9.476422405 -0.12288171 WGDYDSHDIER ddPTM_HeLa_CUDC101_4h_R1 3 WGDYDSHDIER 11 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 ;; ;; 181.68 1.33E-10 81774000 23678.3 18382.7 18874.5 19476.1 21057.2 20562.5 18687 17429.4 20286.9 17299 FALSE FALSE TRUE 20902.76557 18949.0492 19894.91256 20270.41954 19503.85231 20170.30457 19407.76385 19413.49244 19450.6654 17196.10478 1.21555235 1.101938459 1.156942972 1.178779718 1.13420176 1.172957762 1.128613956 1.12894709 1.131108797 1 14.06979419 -9.4548862 1.137350441 0.998258677 1.157154381 0.16728089 0.04976351 0.191831241 0.43600975 0.024499072 0.005806859 3.51E-10 9.4548862 0.158895704 QLLT(ph)LS(ph)S(ph)ELS(ph)QAR ddPTM_HeLa_CUDC101_4h_R1 1 QLLTLSSELSQAR 13 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 4 0 QLLT(1)LS(1)S(1)ELS(1)QAR 97.597 0.0079624 229360000 568.49 1006.9 625.36 834.31 1057.7 1520.7 869.27 566.24 1331 0 TRUE FALSE FALSE 501.852464 1037.921396 659.1688532 868.336768 979.6755782 1491.695181 902.7980351 630.6984728 1276.135617 0 0 WGLEEEDFQPR ddPTM_HeLa_CUDC101_4h_R1 1 WGLEEEDFQPR 11 0 K7ERA3;Q92791 K7ERA3 P3H4;LEPREL4 Synaptonemal complex protein SC65 0 0 134.84 0.0093592 4018300 971.76 976.22 1055.7 850.76 1085.1 906.24 835.72 975.99 1084.9 1262.4 FALSE FALSE TRUE 857.8517659 1006.296181 1112.774335 885.4576701 1005.054335 888.9549819 867.9540003 1087.092757 1040.179963 1254.891189 0.683606494 0.801899153 0.88674966 0.705605138 0.800909548 0.708392082 0.691656781 0.866284477 0.828900523 1 10.29334656 -9.423383293 1.064176051 1.004820709 0.760350456 0.233936004 0.085434224 0.280014944 0.54901761 0.052887031 0.012297089 3.77E-10 9.423383293 -0.244470253 WGRDDIENIAR ddPTM_HeLa_CUDC101_4h_R1 1 WGRDDIENIAR 11 1 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 0 91.469 0.028441 14396000 3832.5 3309.4 3396.4 3528.5 3334.2 3687 3544.8 3411.5 2955.1 2834.6 FALSE FALSE TRUE 3383.26016 3411.358691 3580.019658 3672.407481 3088.242709 3616.676618 3681.524123 3799.85137 2833.289527 2817.739673 1.200700048 1.210672059 1.270528889 1.30331681 1.09600001 1.283538239 1.306552255 1.348545931 1.005518556 1 11.46032261 -13.52287875 0.130970584 0.080075135 1.368393923 0.754200096 0.059645625 29.47110033 0.273246108 6.996098401 0.218030138 3.00E-14 13.52287875 1.288318788 QNSS(ph)SSDSGGSIVR ddPTM_HeLa_CUDC101_4h_R1 2 QNSSSSDSGGSIVR 14 0 A0A2R8Y4W2;A0A2R8YE63;Q12929-2;Q12929 A0A2R8Y4W2 EPS8 Epidermal growth factor receptor kinase substrate 8 1 0 QNS(0.038)S(0.783)S(0.088)S(0.088)DS(0.003)GGSIVR;QNS(0.045)S(0.401)S(0.401)S(0.151)DS(0.002)GGSIVR ; 201.75 8.65E-17 41843900 2459.1 1774.86 2066.45 1757.3 2127.36 2195.27 1757.61 2014.53 2083.1 2123.67 TRUE FALSE FALSE 2170.848026 1829.541333 2178.168538 1828.97029 1970.428891 2153.398882 1825.401606 2243.855952 1997.233736 2111.038316 1.028331892 0.866654726 1.031799622 0.866384222 0.933393239 1.020066223 0.864693735 1.062915786 0.946090708 1 11.04373705 WGTDEDKFTEILCLR ddPTM_HeLa_CUDC101_4h_R1 1 WGTDEDKFTEILCLR 15 1 D6RA82;P12429;D6RFJ9 D6RA82 ANXA3 Annexin;Annexin A3 0 0 126.5 0.00095825 27981000 3282.6 2930.5 2459.4 2292.8 2786.5 3055.4 2590.6 2519.7 2343.4 1217.4 FALSE FALSE TRUE 2897.818604 3020.785232 2592.362603 2386.310294 2580.945446 2997.123336 2690.52031 2806.532463 2246.80406 1210.158851 2.394577045 2.496189017 2.142167205 1.971898394 2.132732777 2.476636298 2.223278629 2.319143856 1.85661912 1 10.24098072 -9.230569066 0.817243296 0.942875296 2.271420906 0.475379095 0.301897472 0.175617423 0.197043742 0.150041518 0.035372193 5.88E-10 9.230569066 1.32854561 WIDLTMEDIRR ddPTM_HeLa_CUDC101_4h_R1 1 WIDLTMEDIRR 11 1 A0A0A0MSW4;P48739;P48739-2;P48739-3 A0A0A0MSW4 PITPNB Phosphatidylinositol transfer protein beta isoform 0 0 119.27 0.00025756 0 3844 3749 3226.6 3690.9 3753.2 3812.9 3278.7 3521.8 3349.4 3297.3 FALSE FALSE TRUE 3393.412147 3864.502246 3401.039756 3841.430855 3476.333913 3740.175285 3405.160557 3922.707476 3211.336314 3277.687513 1.035306793 1.179033154 1.037633924 1.171994231 1.060605656 1.14110185 1.038891152 1.196791171 0.979756704 1 11.6784626 -7.44175809 6.446095977 1.015342586 1.11266849 0.461443364 0.055784414 0.156770236 10.14429977 0.008316586 0.009433248 3.62E-08 7.44175809 0.097325904 WIDNPTVDDR ddPTM_HeLa_CUDC101_4h_R1 4 WIDNPTVDDR 10 0 P18206-2;P18206 P18206-2 VCL Vinculin 0 0 ;;; ;;; 171.33 1.74E-06 109823000 14913.1 12057.7 11576.1 11831 10791.1 11933.3 11792.8 11135.1 12726.9 13422.4 FALSE FALSE TRUE 13165.00902 12429.18345 12201.93898 12313.51932 9995.062052 11705.69218 12247.65225 12402.67477 12202.2918 13342.56297 0.986692666 0.931543923 0.914512378 0.922875114 0.749111102 0.877319613 0.917938501 0.929557148 0.91453882 1 13.7037482 -6.900704515 1.27265635 0.995600796 0.875284633 0.291198536 0.054468616 0.239556509 0.769096288 0.009196224 0.012863549 1.26E-07 6.900704515 -0.120316162 WIFVGGK ddPTM_HeLa_CUDC101_4h_R1 1 WIFVGGK 7 0 O43681 O43681 ASNA1 ATPase ASNA1 0 0 120.06 0.028293 382350 602.58 687.88 596.43 719.88 773.27 563.73 602 557.56 624.63 693.13 FALSE FALSE TRUE 531.9464859 709.0727675 628.6748099 749.239818 716.2274127 552.9777895 625.2193417 621.0303767 598.882487 689.0072319 0.772047754 1.029122387 0.91243572 1.087419381 1.039506379 0.802571822 0.907420579 0.901340868 0.869196228 1 9.428375316 -5.220951887 24.98586291 0.925601794 0.874142104 0.088417704 0.094506151 1639.635811 1011858.515 0.016594571 0.042307241 6.01E-06 5.220951887 -0.05145969 WIGLDLSNGKPR ddPTM_HeLa_CUDC101_4h_R1 1 WIGLDLSNGKPR 12 1 P17987;F5H282;E7EQR6 P17987 TCP1 T-complex protein 1 subunit alpha 0 0 126.66 0.002931 2244700 3239.6 2280.9 1793 2619.8 2736.3 2740 2218.7 2113.6 2447.9 1675 FALSE FALSE TRUE 2859.858999 2351.171825 1889.935004 2726.646768 2534.4486 2687.739065 2304.276002 2354.203681 2346.996526 1665.037026 1.717594837 1.412083809 1.135070857 1.63758927 1.522157503 1.6142218 1.383918776 1.413904703 1.409576178 1 10.70133854 -9.495648305 1.215503 0.99742684 1.500357645 0.11620718 0.197857153 0.285127712 0.74767198 0.120433078 0.028655748 3.19E-10 9.495648305 0.502930805 QPSEGS(ph)SSREEEGPSTSCILESLFR ddPTM_HeLa_CUDC101_4h_R1 1 QPSEGSSSREEEGPSTSCILESLFR 25 1 P43355 P43355 MAGEA1 Melanoma-associated antigen 1 1 0 QPS(0.102)EGS(0.614)S(0.153)S(0.125)REEEGPS(0.002)T(0.003)S(0.001)CILESLFR 49.266 0.022283 4289300 120.93 0 114.85 0 173.47 70.93 52.207 0 202.35 0 TRUE FALSE FALSE 106.7547687 0 121.0591384 0 160.6734637 69.57712843 54.22064148 0 194.0090474 0 0 WISIMTER ddPTM_HeLa_CUDC101_4h_R1 3 WISIMTER 8 0 P07355;P07355-2;H0YN42;A6NMY6;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YL33;H0YNP5 P07355 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 0 ;; ;; 161.9 0.0045647 66179600 6756.84 4434.38 3187.963 5163.47 5287.89 5342.07 4366.11 3966.83 3274.5 2544.9 FALSE FALSE TRUE 5964.813458 4570.997992 3360.313923 5374.058625 4897.81289 5240.178915 4534.512325 4418.397893 3139.523724 2529.762822 2.357854818 1.806887963 1.328311846 2.124332992 1.936075923 2.07141115 1.792465399 1.746566063 1.241034811 1 11.30478642 -9.503604944 1.235386487 0.996949191 1.937683658 0.565204017 0.26793145 0.256820861 0.697867546 0.204885168 0.048941145 3.14E-10 9.503604944 0.940734467 WIYEDVER ddPTM_HeLa_CUDC101_4h_R1 2 WIYEDVER 8 0 O43852;O43852-3;O43852-10;O43852-5;O43852-6;O43852-13;O43852-14;O43852-11 O43852 CALU Calumenin 0 0 ; ; 127.02 0.033976 21097800 8540.4 6829.7 6424.8 6759.1 8616.7 8326.5 7060.7 6843.3 6812.1 5832.8 FALSE FALSE TRUE 7539.307258 7040.114962 6772.144122 7034.765313 7981.063208 8167.685885 7333.033564 7622.31361 6531.302355 5798.106246 1.300305123 1.214209375 1.167992416 1.213286721 1.376494819 1.408681652 1.264729078 1.314621238 1.126454411 1 12.50136605 -12.64254198 0.223188523 9.35E-13 1.331897621 0.559383777 0.07682192 13.65296885 0.2461935 6.038915603 0.059706815 2.28E-13 12.64254198 1.331897621 WKDSDEADLVLAK ddPTM_HeLa_CUDC101_4h_R1 2 WKDSDEADLVLAK 13 1 Q13185 Q13185 CBX3 Chromobox protein homolog 3 0 0 ; ; 132.31 0.0012689 59734000 6952.4 5865.9 6455.2 6526.1 7334.5 6598.2 6592.2 6799.1 7200.6 6520 FALSE FALSE TRUE 6137.450211 6046.621426 6804.187638 6792.262566 6793.448547 6472.350328 6846.463362 7573.082061 6903.78822 6481.21875 0.946959275 0.932945123 1.049831506 1.047991563 1.04817455 0.998631674 1.05635431 1.16846574 1.065199075 1 12.66204941 -6.684620573 7.47537633 0.971162348 1.05775222 0.313199283 0.052630696 0.161627601 13.44830434 0.00722236 0.010213768 2.07E-07 6.684620573 0.086589872 WKDTDEADLVLAK ddPTM_HeLa_CUDC101_4h_R1 1 WKDTDEADLVLAK 13 1 P45973 P45973 CBX5 Chromobox protein homolog 5 0 0 151.54 2.00E-07 0 3551.9 2928.7 3343.2 3375.6 3712.2 3099 3153.3 3665 2949.1 3795.7 FALSE FALSE TRUE 3135.551666 3018.929776 3523.943505 3513.271559 3438.358402 3039.891738 3274.923837 4082.208786 2827.53685 3773.123008 0.831022911 0.800114327 0.933959348 0.931130936 0.911276519 0.805669927 0.867961058 1.081917758 0.749388993 1 11.88154342 -9.50450238 1.287334722 0.999262459 0.884537307 0 0.109840187 0.531106658 1.591219903 0.052392471 0.013028346 3.13E-10 9.50450238 -0.114725152 QPSS(ph)PSHNTNLR ddPTM_HeLa_CUDC101_4h_R1 1 QPSSPSHNTNLR 12 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 0 QPS(0.07)S(0.929)PS(0.001)HNTNLR 123.1 0.0018284 5804300 1127.6 344.15 450.81 330.21 1206.7 905.27 854.84 811.9 1106.1 744.32 TRUE FALSE FALSE 995.4244373 354.7528536 475.1821522 343.6773911 1117.684145 888.003483 887.8114652 904.3234142 1060.50609 739.8927515 1.345363143 0.479465237 0.642231122 0.464496226 1.510602912 1.200178649 1.199919128 1.222235807 1.43332407 1 9.531172355 SDLHIKDDPDGIPSK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 SDLHIKDDPDGIPSKR 16 2 F6WR09;Q9ULJ6-2;Q9ULJ6 F6WR09 ZMIZ1 Zinc finger MIZ domain-containing protein 1 0 1 ; SDLHIKDDPDGIPSK(1)R;SDLHIKDDPDGIPSK(1)R 75.911 0.014897 3160500 5640.9 3986.7 4148.2 4701.9 9261.2 6680.2 7075 7527.2 3439.1 2884.2 FALSE TRUE FALSE 4979.682253 4109.525502 4372.46424 4893.663805 8578.019727 6552.786315 7347.88512 8384.066022 3297.338842 2867.04465 1.736869446 1.433366411 1.525077135 1.706866967 2.991937962 2.28555433 2.562877812 2.924288613 1.150082836 1 11.48534866 -1 0.142315681 0.769399444 8.611684369 0.787368068 0.313226385 25.08887075 0.234754381 0.851591687 40.3242031 0.1 1 7.842284925 QQVAFYGQTLGQAQAHS(ph)QEQ ddPTM_HeLa_CUDC101_4h_R1 1 QQVAFYGQTLGQAQAHSQEQ 20 0 Q96I24;Q96I24-2 Q96I24 FUBP3 Far upstream element-binding protein 3 1 0 QQVAFYGQTLGQAQAHS(1)QEQ 133.95 1.90E-05 7118000 2191.3 2014.6 2024.9 1816.3 2096.3 2354.3 2008.6 2352.7 1979 2275.8 TRUE FALSE FALSE 1934.439136 2076.667438 2134.372219 1890.376565 1941.660125 2309.39565 2086.072375 2620.521858 1897.424782 2262.26344 0.855090128 0.91796004 0.943467582 0.835612922 0.85828206 1.020834094 0.922117353 1.15836282 0.838728482 1 11.14355123 QSNASSDVEVEEKETSVSKEDT(ph)DHEEK ddPTM_HeLa_CUDC101_4h_R1 1 QSNASSDVEVEEKETSVSKEDTDHEEK 27 2 O75475;O75475-3;O75475-2 O75475 PSIP1 PC4 and SFRS1-interacting protein 1 0 QSNAS(0.001)S(0.001)DVEVEEKET(0.075)S(0.098)VS(0.291)KEDT(0.534)DHEEK 51.473 0.020446 32093000 1411.6 1683.1 1118.7 1184 1543 1400.1 1165.2 1285.6 1327.6 1505 TRUE FALSE FALSE 1246.134388 1734.954316 1179.180306 1232.288638 1429.175964 1373.395425 1210.142154 1431.947507 1272.875766 1496.048193 0.832950699 1.159691462 0.788196738 0.823695816 0.955300752 0.918015497 0.808892494 0.957153328 0.850825376 1 10.54694094 QSSGASS(ph)SSFSSSR ddPTM_HeLa_CUDC101_4h_R1 1 QSSGASSSSFSSSR 14 0 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;F6S8Q4;A0A2R8Y645;O00571;O00571-2;A0A2U3TZJ9;A0A0D9SFB3;A0A0D9SF53;A0A0D9SG12;A0A2R8YF78;A0A2R8YDT5;A0A2R8Y7T2;A0A0J9YVQ7;A0A087WVZ1 A0A2R8Y5G6 DDX3X ATP-dependent RNA helicase DDX3X 1 0 QSSGAS(0.225)S(0.42)S(0.232)S(0.123)FSSSR 99.796 0.0015979 0 566.69 311.08 589.36 483.42 541.96 440.48 609.58 486.76 522.84 573.6 TRUE FALSE FALSE 500.2634572 320.6640061 621.2225843 503.1359571 501.9806905 432.0785779 633.0917048 542.1707908 501.2883139 570.1882017 0.877365501 0.562382745 1.089504452 0.882403311 0.880377197 0.757782389 1.110320598 0.950862872 0.879162902 1 9.155294377 QTELFAHFIQPAAQKT(ph)PT(ph)SPLK ddPTM_HeLa_CUDC101_4h_R1 1 QTELFAHFIQPAAQKTPTSPLK 22 1 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 2 0 QTELFAHFIQPAAQKT(0.667)PT(0.667)S(0.667)PLK 62.589 0.018168 13967000 1218.4 1045 1157.4 958.55 1311.5 1289.5 957.6 917.88 1107.5 1216.8 TRUE FALSE FALSE 1075.580999 1077.195211 1219.972545 997.6438122 1214.753258 1264.904936 994.5349528 1022.367749 1061.848381 1209.562419 0.889231495 0.890566038 1.008606522 0.824797295 1.004291501 1.045754163 0.822227061 0.845237693 0.877878119 1 10.24026951 QVLQSTQS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 QVLQSTQSPR 10 0 Q9Y2D5-5;Q9Y2D5-7;Q9Y2D5-6;Q9Y2D5-4;Q9Y2D5 Q9Y2D5-5 AKAP2 A-kinase anchor protein 2 1 0 QVLQSTQS(1)PR 120.53 0.0047131 23798000 2087.1 1652.8 1697.7 1801.6 1956.9 1676.3 1721.9 1554.2 1575.7 1690.7 TRUE FALSE FALSE 1842.453302 1703.720809 1789.482797 1875.077035 1812.543386 1644.32737 1788.31426 1731.123846 1510.748979 1680.643641 1.096278388 1.013731149 1.064760401 1.11568984 1.078481685 0.978391451 1.064065109 1.030036233 0.898910954 1 10.71479814 QVPGGGGGGGSGGGGGS(ph)GGGGSGGGR ddPTM_HeLa_CUDC101_4h_R1 1 QVPGGGGGGGSGGGGGSGGGGSGGGR 26 0 K7EN53;K7EQC2;Q9UHB9-4;Q9UHB9-2;Q9UHB9 K7EN53 SRP68 Signal recognition particle subunit SRP68 1 0 QVPGGGGGGGS(0.068)GGGGGS(0.898)GGGGS(0.033)GGGR 147.28 7.10E-11 8252800 595.24 714.6 497.84 497.79 568.48 581.92 504.06 438.01 651.21 585.2 TRUE FALSE FALSE 525.4668695 736.615979 524.7547363 518.0920278 526.544363 570.8208455 523.501763 487.8712879 624.3668482 581.7192044 0.903299849 1.266274129 0.902075662 0.890622183 0.905152106 0.981265259 0.899921748 0.838671449 1.07331311 1 9.184179123 RAS(ph)GLSTEGATGPSADTSGSELDGR ddPTM_HeLa_CUDC101_4h_R1 2 RASGLSTEGATGPSADTSGSELDGR 25 1 Q7Z628 Q7Z628 NET1 Neuroepithelial cell-transforming gene 1 protein 1 0 RAS(0.929)GLS(0.056)T(0.015)EGATGPSADTSGSELDGR;RAS(0.333)GLS(0.333)T(0.333)EGAT(0.002)GPSADTSGSELDGR ; 103.93 9.25E-07 20999600 795.69 733.79 861.85 698.1 871.21 1106.41 812.63 717.69 979 932.19 TRUE FALSE FALSE 702.4204244 756.3972001 908.444218 726.5715354 806.942574 1085.307073 843.9734113 799.3889286 938.6452056 926.6452924 0.758025137 0.816274799 0.9803581 0.784088088 0.870821425 1.171221698 0.910783682 0.862669821 1.012949845 1 9.85587339 RAS(ph)NEKESAAPASPAPS(ph)PAPSPTPAPPQK ddPTM_HeLa_CUDC101_4h_R1 1 RASNEKESAAPASPAPSPAPSPTPAPPQK 29 2 Q3KQU3-4;Q3KQU3;Q3KQU3-2;Q3KQU3-3;H0YF21 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 2 0 RAS(0.626)NEKES(0.166)AAPAS(0.621)PAPS(0.574)PAPS(0.012)PT(0.001)PAPPQK 79.534 5.83E-05 7268700 965.96 1061.1 1100.4 874.21 887.44 1034.8 945.43 909.59 887.66 1156.2 TRUE FALSE FALSE 852.7316331 1093.791233 1159.890953 909.8640625 821.9753192 1015.062914 981.8955518 1013.134049 851.0702791 1149.322871 0.74194263 0.95168317 1.00919505 0.791652272 0.715182252 0.883183429 0.854325252 0.881505167 0.740497123 1 10.16656843 RASPAPSDSSPGEPFVGGPVS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 RASPAPSDSSPGEPFVGGPVSSPR 24 1 O60346 O60346 PHLPP1 PH domain leucine-rich repeat-containing protein phosphatase 1 1 0 RASPAPSDSSPGEPFVGGPVS(0.5)S(0.5)PR 121.38 9.53E-09 7987000 629.12 738.25 542.11 608.66 558.09 527.62 528.53 701.28 694.45 635.74 TRUE FALSE FALSE 555.3755073 760.9946075 571.4181064 633.4837857 516.9208126 517.5565276 548.9155791 781.1108805 665.8244771 631.9585902 0.878816296 1.204184292 0.904201818 1.002413442 0.817966273 0.818972217 0.868594221 1.236015924 1.053588775 1 9.303686217 RDSFDDRGPS(ph)LNPVLDYDHGSR ddPTM_HeLa_CUDC101_4h_R1 2 RDSFDDRGPSLNPVLDYDHGSR 22 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 0 RDS(0.075)FDDRGPS(0.925)LNPVLDYDHGSR;RDS(0.151)FDDRGPS(0.849)LNPVLDYDHGSR ; 85.166 0.00029537 198568000 7967.2 6334.7 5412.3 5180.9 10379.5 9243.9 10137.1 18785.8 8102.1 7953.6 TRUE FALSE FALSE 7033.296893 6529.864599 5704.905309 5392.199496 9613.824964 9067.588009 10528.09134 20924.29954 7768.128009 7906.291633 0.889582274 0.825907379 0.721565251 0.682013736 1.215971458 1.146882563 1.331609284 2.646537784 0.982524851 1 12.94878546 REAMPNPKTS(ph)S(ph)S(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 REAMPNPKTSSSK 13 2 Q02241;A0A2U3TZL8;H7BYN4;A0A2R8Y531;H0YME6;Q02241-2 Q02241;Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 3 0 REAMPNPKT(0.444)S(0.965)S(0.898)S(0.693)K 47.228 0.0033544 0 2139.1 1763.8 1608.4 1649.9 2245.7 2190.9 1698.5 1387.6 1982.3 1725.7 TRUE FALSE FALSE 1888.357941 1818.140587 1695.354969 1717.190053 2080.039185 2149.112233 1764.011714 1545.558775 1900.588755 1715.43546 1.10080384 1.05987117 0.988294231 1.001022827 1.212542957 1.252808563 1.028317156 0.900971684 1.107933699 1 10.74435913 RFS(ph)LDER ddPTM_HeLa_CUDC101_4h_R1 1 RFSLDER 7 1 Q7LBC6;Q7LBC6-2 Q7LBC6 KDM3B Lysine-specific demethylase 3B 1 0 RFS(1)LDER 75.652 0.028082 16520000 2232.6 2102.5 2197.6 1987.6 2068.3 2246.1 1987.5 1898.4 2443.7 2215.9 TRUE FALSE FALSE 1970.898012 2167.275533 2316.408903 2068.662919 1915.72563 2203.259385 2064.158541 2114.506182 2342.969652 2202.719728 0.894756599 0.983908895 1.051613092 0.939140324 0.869709208 1.000244996 0.937095407 0.959952442 1.063671252 1 11.10507022 RGS(ph)DAS(ph)DFDISEIQSVCSDVETVPQTHRPTPR ddPTM_HeLa_CUDC101_4h_R1 1 RGSDASDFDISEIQSVCSDVETVPQTHRPTPR 32 2 F6QMI7;E9PHM6;Q03001-8;Q03001-14;A0A494C073;A0A0U1RQJ2;H0YC65;A0A494C1U5;F8W9J4;Q03001 F6QMI7;F8W9J4 DST Dystonin 2 0 RGS(0.987)DAS(0.996)DFDIS(0.016)EIQS(0.001)VCSDVETVPQTHRPTPR 58.272 0.00062285 10423000 501.63 516.06 402.15 332.38 479.36 574.02 481.18 649.16 417.65 444.93 TRUE FALSE FALSE 442.8296918 531.9591969 423.8914454 345.9358931 443.9985678 563.0715249 499.7392738 723.0577504 400.4342902 442.2835366 1.001234853 1.202756044 0.95841561 0.782158648 1.003877674 1.273100801 1.129907022 1.634828545 0.905379145 1 8.788827731 RGS(ph)YPFIDFR ddPTM_HeLa_CUDC101_4h_R1 1 RGSYPFIDFR 10 1 A1E5M1;Q9NP56 A1E5M1 PDE7B "cAMP-specific 3,5-cyclic phosphodiesterase 7B" 1 0 RGS(1)YPFIDFR 81.565 0.021971 5763000 2529.2 2234.2 1957.2 2310.3 2071.4 2019.8 2183.6 2236.1 2071.4 2189 TRUE FALSE FALSE 2232.73101 2303.033054 2063.012152 2404.52402 1918.596949 1981.27568 2267.822183 2490.648585 1986.016015 2175.979731 1.026080794 1.05838902 0.948084269 1.105030523 0.88171637 0.910521202 1.042207403 1.144610196 0.912699685 1 11.0874494 WLYDETLEDR ddPTM_HeLa_CUDC101_4h_R1 2 WLYDETLEDR 10 0 Q9H5Q4 Q9H5Q4 TFB2M "Dimethyladenosine transferase 2, mitochondrial" 0 0 ; ; 182.76 2.30E-10 9645300 2233.3 1791.69 1583.08 1475.84 1821.26 1873.82 1542.51 1333.4 1551.3 1407.98 FALSE FALSE TRUE 1971.515959 1846.889845 1668.666093 1536.031134 1686.909278 1838.080005 1602.005127 1485.188866 1487.354757 1399.605272 1.408622844 1.319579085 1.192240503 1.097474527 1.205275024 1.313284568 1.144612098 1.061148379 1.062695881 1 10.45080429 -4.522845027 24.70323447 1.207090313 1.082014253 0.111523007 0.118725428 1.822471226 1331712.233 0.022097005 0.084525421 3.00E-05 4.522845027 -0.12507606 WMDEAQSLDTADR ddPTM_HeLa_CUDC101_4h_R1 4 WMDEAQSLDTADR 13 0 Q6N069-3;Q6N069-2;Q6N069 Q6N069-3 NAA16 "N-alpha-acetyltransferase 16, NatA auxiliary subunit" 0 0 ;;; ;;; 227.81 2.26E-32 35921000 5585.2 4612.74 4536.41 4736.51 5392 4747.29 4927.9 4303.04 4946.07 5393.54 FALSE FALSE TRUE 4930.511323 4754.853052 4781.662046 4929.685351 4994.242902 4656.743353 5117.970754 4792.88068 4742.190901 5361.458984 0.919621196 0.886858049 0.891858366 0.919467139 0.93150818 0.868558981 0.954585453 0.893950825 0.88449635 1 12.38840993 -8.849851863 0.704879302 1.001050877 0.907771658 0 0.042248146 0.306261387 0.283599097 0.015481639 0.005033716 1.41E-09 8.849851863 -0.093279219 RHPPLYQAGLTPPLS(ph)PPK ddPTM_HeLa_CUDC101_4h_R1 1 RHPPLYQAGLTPPLSPPK 18 1 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 0 RHPPLYQAGLTPPLS(1)PPK 93.255 0.0021436 11133000 1949.7 1753.9 1972.3 1383.5 1259.9 1553.4 1543.2 1644.2 1668.9 1634 TRUE FALSE FALSE 1721.159122 1807.93558 2078.928504 1439.92511 1166.959687 1523.771483 1602.721741 1831.369082 1600.107236 1624.280895 1.059643764 1.113068303 1.27990701 0.886500059 0.71844697 0.938120671 0.986726954 1.127495304 0.985117316 1 10.66558543 WMEEQAQSLIDK ddPTM_HeLa_CUDC101_4h_R1 2 WMEEQAQSLIDK 12 0 A0A0A0MRR7;P09234 A0A0A0MRR7 SNRPC U1 small nuclear ribonucleoprotein C 0 0 ; ; 158.05 0.00076074 43595000 2476.3 2188.93 2028.29 2146.34 2567.1 2313.07 1740.47 2145.37 2258.11 2469.14 FALSE FALSE TRUE 2186.031868 2256.368339 2137.945493 2233.877022 2377.730147 2268.952044 1807.600511 2389.590249 2165.02975 2454.453445 0.890638962 0.919295635 0.871047482 0.910132163 0.968741188 0.924422522 0.736457444 0.973573263 0.882082222 1 11.26118609 -9.495218679 0.524933358 1.030298332 0.893335473 0 0.072709308 1.788522076 0.589942221 0.128883316 0.015011288 3.20E-10 9.495218679 -0.136962859 WNDNCPSWNTIDPEER ddPTM_HeLa_CUDC101_4h_R1 1 WNDNCPSWNTIDPEER 16 0 P17655;P17655-2 P17655 CAPN2 Calpain-2 catalytic subunit 0 0 141.46 0.0017245 13898000 2713.6 2811.3 2086.1 2191.1 2543.7 2096 1932.7 2193.1 2270 1784.7 FALSE FALSE TRUE 2395.515922 2897.912821 2198.880876 2280.462529 2356.056319 2056.022292 2007.244886 2442.753639 2176.429639 1774.084525 1.350282857 1.63346942 1.239445384 1.285430596 1.328040624 1.158920143 1.131425734 1.376909389 1.226790273 1 10.79285903 -9.193013489 1.023795574 1.006510893 1.30856176 0.16975634 0.147131732 0.397882714 0.772330517 0.082624661 0.025376355 6.41E-10 9.193013489 0.302050867 RIDFTPVS(ph)PAPSPTR ddPTM_HeLa_CUDC101_4h_R1 1 RIDFTPVSPAPSPTR 15 1 G1UD79;Q7Z309-3;Q7Z309-4;Q7Z309-2;Q7Z309;Q7Z309-5 G1UD79;Q7Z309-2 SPACIA2;FAM122B Protein FAM122B 1 0 RIDFT(0.041)PVS(0.95)PAPS(0.008)PTR 144.15 0.00070904 11704000 1039.4 896.32 1030.6 912.03 1021.7 1048.1 775.02 1036.5 946.7 975.15 TRUE FALSE FALSE 917.5631076 923.9345568 1086.317353 949.2265255 946.3312265 1028.109239 804.912781 1154.49097 907.6766253 969.3497644 0.946575881 0.953148792 1.120666031 0.979240477 0.97625363 1.060617412 0.830363622 1.190995255 0.936376795 1 9.920873508 RKAS(ph)PEPPDSAEGALK ddPTM_HeLa_CUDC101_4h_R1 2 RKASPEPPDSAEGALK 16 2 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 0 RKAS(1)PEPPDSAEGALK;RKAS(1)PEPPDSAEGALK ; 87.496 0.0087425 138244000 11058.6 9361.1 10196.8 10341.9 9887.1 9220.8 10017.2 10289.6 9292.2 10726.6 TRUE FALSE FALSE 9762.327672 9649.504395 10748.06985 10763.68738 9157.748331 9044.928603 10403.56676 11460.92647 8909.171583 10662.79771 0.915550303 0.904969283 1.007997164 1.009461839 0.858850424 0.848269737 0.975688281 1.074851722 0.835537898 1 13.3802984 RLS(ph)LPGLLS(ph)QVSPR ddPTM_HeLa_CUDC101_4h_R1 2 RLSLPGLLSQVSPR 14 1 Q96Q42-3;Q96Q42 Q96Q42-3 ALS2 Alsin 2 0 RLS(1)LPGLLS(0.732)QVS(0.268)PR;RLS(1)LPGLLS(0.722)QVS(0.278)PR ; 119.37 0.00079306 14646900 6303 5660.8 4908.8 5962.2 6697.1 6058.5 5912.2 4736.5 5809.2 6203.9 TRUE FALSE FALSE 5564.171895 5835.202538 5174.184576 6205.364287 6203.068276 5942.944207 6140.235534 5275.684014 5569.742317 6166.998927 0.902249532 0.946198079 0.839011752 1.006221075 1.005848768 0.96366876 0.995660224 0.855470234 0.903152795 1 12.59035288 RLSSAS(ph)TGKPPLSVEDDFEK ddPTM_HeLa_CUDC101_4h_R1 1 RLSSASTGKPPLSVEDDFEK 20 2 O75152;A0A1B0GTU1;A0A494C0C4 O75152 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 0 RLS(0.11)S(0.3)AS(0.48)T(0.11)GKPPLSVEDDFEK 75.017 0.0026012 34027000 1760 1082.1 1497.5 1634.4 1444.4 2035.6 1667.2 2195.2 1378.2 1678.9 TRUE FALSE FALSE 1553.695468 1115.438218 1578.45938 1701.057896 1337.84949 1996.774322 1731.504462 2445.092695 1321.390013 1668.913828 0.930962068 0.668361781 0.945800408 1.019260472 0.80162886 1.196451421 1.037503814 1.465080254 0.791766471 1 10.70469375 RLSSLT(ph)GAPGT(ph)T(ph)AVSSNR ddPTM_HeLa_CUDC101_4h_R1 1 RLSSLTGAPGTTAVSSNR 18 1 Q8N7P7 Q8N7P7 Uncharacterized protein FLJ40521 3 0 RLS(0.07)S(0.327)LT(0.614)GAPGT(0.72)T(0.72)AVS(0.425)S(0.122)NR 42.981 0.0033544 0 172.94 317.86 156.75 221.5 242.53 257.07 231.63 323.04 337.76 283.2 TRUE FALSE FALSE 152.6682354 327.6528898 165.2243791 230.5337274 224.6390451 252.1668181 240.5640467 359.8135678 323.8373898 281.5155138 0.542308427 1.163889284 0.586910387 0.818902391 0.797963288 0.895747501 0.854532112 1.278130512 1.150335857 1 8.137070619 SIPAGAEPGEK(ac)GSAR ddPTM_HeLa_CUDC101_4h_R1 2 SIPAGAEPGEKGSAR 15 1 A6NGP5;Q9H910;Q9H910-3;H3BU16;Q9H910-2 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 0 1 ; SIPAGAEPGEK(1)GSAR;SIPAGAEPGEK(1)GSAR 148.89 0.0023981 13786700 1215.2 1602.15 1584.95 1363.91 1582.44 1531.46 1597.93 1898.73 949.58 1001.35 FALSE TRUE FALSE 1072.756098 1651.510342 1670.637191 1419.536145 1465.706554 1502.249952 1659.562695 2114.873748 910.4379105 995.3939257 1.077720157 1.659152522 1.678367878 1.42610489 1.472488947 1.509201446 1.667242137 2.124660091 0.91465086 1 9.959123773 -1 0.130139047 0.735526142 4.790995998 0.728147824 0.182892958 33.26154156 0.291863905 0.703522135 24.85487997 0.1 1 4.055469856 WQHWHEECER ddPTM_HeLa_CUDC101_4h_R1 2 WQHWHEECER 10 0 J3QLV0;J3QLD4;J3QL54;J3KT10;Q9BW27-2;Q9BW27-3;Q9BW27 J3QLV0 NUP85 Nuclear pore complex protein Nup85 0 0 ; ; 131.12 0.0016333 26164000 2848.8 1910.55 2201.64 2530.5 2547.4 2672.4 2131.26 2205.19 2117.88 1130.47 FALSE FALSE TRUE 2514.867983 1969.411781 2320.667318 2633.704728 2359.483377 2621.428423 2213.463412 2456.219916 2030.58009 1123.745914 2.237932927 1.752541883 2.065117469 2.343683474 2.099659138 2.332759025 1.969718763 2.185743134 1.806974392 1 10.13410015 -9.413592501 0.610805625 0.776622072 2.149133433 0.37092014 0.299857781 0.330568337 0.163956082 0.260491212 0.03694306 3.86E-10 9.413592501 1.372511361 RMNS(ph)TGGQTPR ddPTM_HeLa_CUDC101_4h_R1 4 RMNSTGGQTPR 11 1 Q96ST2-3;Q96ST2;Q96ST2-2;A0A1B0GW95 Q96ST2-3 IWS1 Protein IWS1 homolog 1 0 RMNS(0.876)T(0.124)GGQTPR;RMNS(0.758)T(0.242)GGQTPR;RMNS(0.778)T(0.222)GGQTPR;RMNS(0.853)T(0.147)GGQTPR ;;; 97.203 0.0088095 21854700 3304.72 2308.62 3790.62 3800.89 3681.18 3622.55 3954.49 2711.49 3320.47 3678.85 TRUE FALSE FALSE 2917.345731 2379.745846 3995.552383 3955.906723 3409.626685 3553.455894 4107.016004 3020.155061 3183.598821 3656.968037 0.797749858 0.650742862 1.092586083 1.081744955 0.932364366 0.971694546 1.123065874 0.825863128 0.870556917 1 11.8364323 RNS(ph)LILKPKPDPAQQTDSQNSDTEQYFR ddPTM_HeLa_CUDC101_4h_R1 1 RNSLILKPKPDPAQQTDSQNSDTEQYFR 28 3 Q9NXD2 Q9NXD2 MTMR10 Myotubularin-related protein 10 1 0 RNS(0.999)LILKPKPDPAQQT(0.001)DSQNSDTEQYFR 64.035 0.0008872 29988000 3395.5 2944 2733.2 2853 3248.8 2897.2 3392.5 2558.3 3252.5 2946.8 TRUE FALSE FALSE 2997.484637 3034.701151 2880.965059 2969.357672 3009.142497 2841.940737 3523.349861 2849.526531 3118.430573 2929.272303 1.023286444 1.035991481 0.983508791 1.013684412 1.027266224 0.9701866 1.202807215 0.972776252 1.064575175 1 11.5163266 WREEQMER ddPTM_HeLa_CUDC101_4h_R1 4 WREEQMER 8 1 P09496-2;P09496-4;P09496-3;P09496;F8WF69 P09496-2 CLTA Clathrin light chain A 0 0 ;;; ;;; 129.42 0.0070681 109352000 14146.6 11306.5 8961.8 11695.8 11685.2 10222.5 10125.7 9909.1 9673.4 8095.4 FALSE FALSE TRUE 12488.35699 11654.83986 9446.302016 12172.80528 10823.20608 10027.52284 10516.25164 11037.11189 9274.658358 8047.248201 1.551879187 1.448301279 1.173854935 1.512666812 1.344957407 1.24608097 1.306813382 1.371538645 1.15252545 1 12.97427981 -9.492565736 1.239699159 1.000177383 1.383782612 0.482802383 0.117564755 0.258467414 0.711366194 0.083685169 0.020412961 3.22E-10 9.492565736 0.383605229 WREEQR ddPTM_HeLa_CUDC101_4h_R1 1 WREEQR 6 1 A0A0C4DG89;Q7L014;D6RJA6;H0Y9Q6;F8VW50;Q2TAC6-3;Q2TAC6-2;Q2TAC6;P09497-2;P09497 A0A0C4DG89;P09497-2 DDX46;CLTB;KIF19 Probable ATP-dependent RNA helicase DDX46;Kinesin-like protein;Kinesin-like protein KIF19;Clathrin light chain B 0 0 103.28 0.028603 3461700 1143.1 434.8 1298.2 1091.7 462.3 516.19 834.38 512.51 983.92 1365.6 FALSE FALSE TRUE 1009.107551 448.1956726 1368.384619 1136.224245 428.19705 506.3445358 866.5623161 570.8520668 943.3624011 1357.47735 0.743369715 0.330168067 1.008034954 0.837011567 0.315435871 0.37300404 0.638362265 0.420524193 0.694937857 1 10.40671241 -8.641695807 0.093080729 1.66778556 3.00E-16 0.194134468 0.226784413 18.43516942 0.651786801 7.241434894 4.303717579 2.28E-09 8.641695807 -1.66778556 WRPEDAEEAEHR ddPTM_HeLa_CUDC101_4h_R1 1 WRPEDAEEAEHR 12 1 F8W8D3;Q14493;E7EUV9;H0YAE8 F8W8D3 SLBP Histone RNA hairpin-binding protein 0 0 136.27 0.00077326 5666900 4748.1 4792.9 5035.2 4737.4 5133.8 4699.9 3883.2 3435.5 3983.1 4311.8 FALSE FALSE TRUE 4191.534916 4940.563568 5307.418143 4930.611649 4755.089802 4610.257238 4032.976325 3826.583433 3818.914932 4286.153222 0.977924656 1.15268011 1.238270745 1.150358234 1.10940733 1.075616526 0.94093144 0.892778031 0.890988897 1 12.06546771 -2.186603771 13.76525162 1.030468877 1.055015725 0 0.114402746 0 0 0.015710397 0 0.006507231 2.186603771 0.024546848 RNSS(ph)EASSGDFLDLK ddPTM_HeLa_CUDC101_4h_R1 7 RNSSEASSGDFLDLK 15 1 Q9UK76-3;Q9UK76;J3KSH8;J3KT51;Q9UK76-2 Q9UK76-3 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 0 RNS(0.355)S(0.645)EASSGDFLDLK;RNS(0.198)S(0.798)EAS(0.002)S(0.002)GDFLDLK;RNS(0.434)S(0.565)EASS(0.001)GDFLDLK;RNS(0.379)S(0.618)EAS(0.001)S(0.002)GDFLDLK;RNS(0.029)S(0.966)EAS(0.002)S(0.003)GDFLDLK;RNS(0.39)S(0.61)EASSGDFLDLK;RNS(0.267)S(0.731)EAS(0.001)SGDFLDLK ;;;;;; 157.22 1.79E-07 26449400 11473.76 13655.46 9808.43 10075.28 10396.1 10494.12 9934.27 11028.25 10703.53 13555.1 TRUE FALSE FALSE 10128.82325 14076.16854 10338.70339 10486.19347 9629.200415 10293.96215 10317.43812 12283.6614 10262.32596 13474.47366 0.751704556 1.044654425 0.767280686 0.778226573 0.714625347 0.763960241 0.765702496 0.911624581 0.761612381 1 13.7179413 RPDSS(ph)DDRY(ph)VMT(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 RPDSSDDRYVMTK 13 2 Q96KR1;H0Y8W1 Q96KR1 ZFR Zinc finger RNA-binding protein 3 0 RPDS(0.465)S(0.539)DDRY(0.997)VMT(1)K 48.823 0.0033274 0 667.96 455.85 555.02 742.71 380.98 416.23 418.14 462.46 577.09 494.99 TRUE FALSE FALSE 589.6627414 469.8941982 585.02606 773.0009241 352.8758644 408.2911062 434.2677999 515.1045771 553.3021059 492.0457775 1.198390004 0.954980654 1.188966732 1.570993919 0.717160639 0.829782766 0.882576012 1.046863119 1.124493149 1 8.942648733 RPGQSFHVNSEVNS(ph)VLSPR ddPTM_HeLa_CUDC101_4h_R1 1 RPGQSFHVNSEVNSVLSPR 19 1 Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;H0YEH2 Q5T1Z4 PUM1 Pumilio homolog 1 1 0 RPGQSFHVNSEVNS(0.673)VLS(0.327)PR 93.729 0.0038312 11239000 3161.7 2253 2109.8 1958.5 3783.7 3184.1 3064.2 2672.7 3067 3179.1 TRUE FALSE FALSE 2791.090319 2322.41226 2223.86217 2038.376095 3504.583989 3123.368598 3182.38722 2976.949365 2940.576962 3160.190572 0.883203166 0.734896269 0.703711412 0.645016827 1.108978686 0.988348179 1.007023832 0.942015773 0.930506213 1 11.62579585 RPS(ph)SGIS(ph)EALIS(ph)ENENK ddPTM_HeLa_CUDC101_4h_R1 1 RPSSGISEALISENENK 17 1 H0Y9Y3;Q9UMS6;Q9UMS6-3;Q9UMS6-4;Q9UMS6-2 H0Y9Y3 SYNPO2 Synaptopodin-2 3 0 RPS(0.616)S(0.499)GIS(0.89)EALIS(0.995)ENENK 45.723 0.0033124 0 1826.1 1847.2 2892.6 2562 1416.3 1569.2 1631.5 1546.7 2038.3 1885.8 TRUE FALSE FALSE 1612.047326 1904.110043 3048.982706 2666.489434 1311.822371 1539.270124 1694.427502 1722.770076 1954.280411 1874.583178 0.859949745 1.015751163 1.626485686 1.422443915 0.699794166 0.821126607 0.903895608 0.919015009 1.042514642 1 10.87235413 RQS(ph)FAVLR ddPTM_HeLa_CUDC101_4h_R1 1 RQSFAVLR 8 1 C9JUG3;Q8TE77-4;Q8TE77-2;Q8TE77;A0A087WWG1 C9JUG3 SSH3 Protein phosphatase Slingshot homolog 3 1 0 RQS(1)FAVLR 93.096 0.013461 30281000 2139.1 1760.8 1444.6 1462.3 2151.7 2025.5 2126.5 1325.7 1652.7 1871.9 TRUE FALSE FALSE 1888.357941 1815.048161 1522.699446 1521.938915 1992.973378 1986.866962 2208.519817 1476.612329 1584.575006 1860.765856 1.014828349 0.975430711 0.818318673 0.817909954 1.071050058 1.06776839 1.186887545 0.793550852 0.851571412 1 10.86168081 WSEPNEEELIK ddPTM_HeLa_CUDC101_4h_R1 2 WSEPNEEELIK 11 0 P39748;P39748-2;I3L3E9 P39748 FEN1 Flap endonuclease 1 0 0 ; ; 124.1 0.0023583 4796800 1822.79 1566.73 1492.95 1331 1365.98 1246.1 1306.05 1317.16 1502.45 1359.72 FALSE FALSE TRUE 1609.125319 1614.999094 1573.663393 1385.283933 1265.214377 1222.332719 1356.424786 1467.10017 1440.518375 1351.632325 1.190505206 1.194850896 1.164268835 1.024897013 0.936064012 0.904338181 1.003545684 1.085428443 1.065762004 1 10.40048704 -6.043812995 5.890243067 1.106621708 0.978266949 0.463511199 0.071122056 0.196467056 17.56362066 0.014139866 0.024013107 9.04E-07 6.043812995 -0.128354759 WSLEDDDDDEDDPAEAEK ddPTM_HeLa_CUDC101_4h_R1 1 WSLEDDDDDEDDPAEAEK 18 0 A0A0C4DG89;Q7L014;D6RJA6 A0A0C4DG89 DDX46 Probable ATP-dependent RNA helicase DDX46 0 0 144.27 0.00048341 4292000 3033.2 2144 1892.1 2010.7 1778.4 2079.2 1798.9 1636.3 2295.5 2587.9 FALSE FALSE TRUE 2677.652894 2210.054099 1994.392649 2092.705037 1647.210975 2039.542724 1868.284176 1822.569778 2200.878518 2572.507056 1.040872906 0.859105165 0.775271984 0.813488551 0.640313492 0.792822986 0.72625036 0.708479992 0.85553838 1 11.32895932 -6.981900338 1.995146215 1.020271085 0.737865622 0.651239669 0.069939984 0.070870763 0.56183042 0.007975503 0.010510954 1.04E-07 6.981900338 -0.282405463 WSLELEDQER ddPTM_HeLa_CUDC101_4h_R1 1 WSLELEDQER 10 0 P37198 P37198 NUP62 Nuclear pore glycoprotein p62 0 0 174.86 1.09E-06 6210400 1164 1484 1222.2 1154 1171.6 1351 1252.5 1151.4 1459.3 1568.6 FALSE FALSE TRUE 1027.557685 1529.720281 1288.275829 1201.065108 1085.173402 1325.231926 1300.809345 1282.470722 1399.147036 1559.269897 0.658999245 0.981049069 0.826204515 0.77027403 0.69594969 0.849905413 0.834242582 0.82248155 0.897309079 1 10.60665495 -9.603089533 1.400595749 1.000052849 0.788126547 0.255263798 0.089424496 0.33161911 1.166908996 0.065706327 0.01515141 2.49E-10 9.603089533 -0.211926302 RRLGS(ph)GPDR ddPTM_HeLa_CUDC101_4h_R1 1 RRLGSGPDR 9 2 Q6NUJ5-2;Q6NUJ5 Q6NUJ5-2 PWWP2B PWWP domain-containing protein 2B 1 0 RRLGS(1)GPDR 78.264 0.039614 5800800 2134.2 1524.7 1554.2 1715.1 1537.7 1707.8 1557.1 1599 1490.9 1510.1 TRUE FALSE FALSE 1884.032311 1571.6742 1638.224753 1785.049191 1424.266935 1675.22656 1617.157869 1781.023697 1429.444471 1501.117858 1.255086202 1.047002533 1.091336529 1.189146596 0.948804204 1.115986031 1.077302398 1.186464932 0.952253325 1 10.55182154 RRNS(ph)AHTLNQAS(ph)SRSHALLT(ph)LYISR ddPTM_HeLa_CUDC101_4h_R1 1 RRNSAHTLNQASSRSHALLTLYISR 25 3 B1ALC3;A0A1W2PPS5;Q96FN5 B1ALC3 KIF12 Kinesin-like protein;Kinesin-like protein KIF12 3 0 RRNS(0.763)AHT(0.237)LNQAS(0.34)S(0.336)RS(0.329)HALLT(0.484)LY(0.18)IS(0.331)R 43.438 0.0032066 0 347.23 255.26 288.88 58.615 226.76 236.16 217.2 258.74 361.03 205.59 TRUE FALSE FALSE 306.5282258 263.124258 304.4977266 61.00557306 210.0323666 231.6556415 225.5774768 288.1939157 346.1481906 204.3671415 1.49988997 1.28750765 1.489954424 0.298509695 1.027720821 1.133526846 1.103785447 1.410177358 1.693756579 1 7.675019446 RRRS(ph)S(ph)SGS(ph)PPS(ph)PQSR ddPTM_HeLa_CUDC101_4h_R1 1 RRRSSSGSPPSPQSR 15 3 Q5M9Q1 Q5M9Q1 NKAPL NKAP-like protein 4 0 RRRS(0.98)S(0.984)S(0.269)GS(0.766)PPS(0.865)PQS(0.135)R 78.228 0.0015855 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 WVNDPHR ddPTM_HeLa_CUDC101_4h_R1 1 WVNDPHR 7 0 Q9H4A6 Q9H4A6 GOLPH3 Golgi phosphoprotein 3 0 0 116.9 0.011529 2484600 1906.1 1088.6 1148.8 1492.2 1237.1 1051.4 1220.7 1049 1042.8 937.58 FALSE FALSE TRUE 1682.669847 1122.138476 1210.907603 1553.058366 1145.841598 1031.346297 1267.782808 1168.41392 999.8153426 932.0032325 1.805433489 1.204007064 1.299252578 1.666365858 1.22943951 1.106590901 1.360277265 1.253658656 1.072759522 1 9.864191148 RRT(ph)CETGEPMEAESGDTSSEGPAQVYLPGR ddPTM_HeLa_CUDC101_4h_R1 1 RRTCETGEPMEAESGDTSSEGPAQVYLPGR 30 2 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 1 0 RRT(0.5)CET(0.5)GEPMEAESGDTSSEGPAQVYLPGR 129.22 4.98E-14 10283000 535 314.05 553.77 343.95 237.63 410.07 398.54 393.28 434.65 420.61 TRUE FALSE FALSE 472.288111 323.7255083 583.7084813 357.9777677 220.1005083 402.248598 413.9118213 438.0494055 416.733543 418.108193 1.129583488 0.774262532 1.396070422 0.856184532 0.526419984 0.962068203 0.989963431 1.047693905 0.996712215 1 8.707732504 WVWDQEEER ddPTM_HeLa_CUDC101_4h_R1 2 WVWDQEEER 9 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2;E9PMP7;H0Y424;H0YDG6;U3KQE6;H0YDQ3 E9PMS6 LMO7 LIM domain only protein 7 0 0 ; ; 186.41 3.05E-10 56959000 4400.7 4247.4 4020.1 3984 4217.1 4259.1 4238 3765.8 3755.1 3641.2 FALSE FALSE TRUE 3884.856617 4378.25736 4237.438766 4146.48474 3906.012935 4177.864764 4401.46108 4194.48345 3600.313189 3619.54198 1.07330061 1.209616405 1.170711319 1.145582718 1.079145637 1.15425233 1.216027084 1.158843708 0.994687507 1 11.82159143 -7.649929538 1.658122683 1.023563197 1.159973023 0.715063346 0.040340581 0.144217746 0.817580578 0.008888417 0.009020245 2.24E-08 7.649929538 0.136409826 RS(ph)AVSAPKS(ph)T(ph)K ddPTM_HeLa_CUDC101_4h_R1 1 RSAVSAPKSTK 11 2 Q12923-3;Q12923;Q12923-4;Q12923-2 Q12923-3 PTPN13 Tyrosine-protein phosphatase non-receptor type 13 3 0 RS(0.979)AVS(0.021)APKS(1)T(1)K 70.942 0.0027201 0 3679.2 3058.5 3610.6 3342.2 3220.2 3521.6 2945.4 3178 3749.2 3232.3 TRUE FALSE FALSE 3247.929753 3152.72876 3805.799957 3478.509362 2982.652262 3454.431347 3059.005065 3539.770674 3594.656389 3213.074136 1.010848059 0.981218804 1.184473123 1.082610987 0.928286163 1.075117225 0.952049326 1.101677249 1.118759243 1 11.64973855 WYNHIK ddPTM_HeLa_CUDC101_4h_R1 2 WYNHIK 6 0 P24534;C9JZW3;F2Z2G2 P24534 EEF1B2 Elongation factor 1-beta 0 0 ; ; 105.42 0.0015722 8555000 23114 11676.2 6118.4 13290.5 10105.1 11433.4 9290.3 8616.3 5914.4 1594.09 FALSE FALSE TRUE 20404.61196 12035.92988 6449.179211 13832.54404 9359.666905 11215.32694 9648.629983 9597.144764 5670.605929 1584.608282 12.87675459 7.595523777 4.069888619 8.729314491 5.906612387 7.077665233 6.088968544 6.056477726 3.578553762 1 10.62991053 RS(ph)PTEDFR ddPTM_HeLa_CUDC101_4h_R1 1 RSPTEDFR 8 1 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 RS(0.996)PT(0.004)EDFR 94.363 0.012799 83419000 1354.2 1150.5 1191.9 1235.8 1233.4 1171.7 1247.4 798.31 1405.1 1350.7 TRUE FALSE FALSE 1195.462729 1185.945541 1256.337719 1286.201266 1142.414539 1149.351775 1295.512636 889.1863835 1347.181183 1342.665976 0.890364953 0.883276677 0.935703847 0.957945824 0.850855357 0.856022119 0.964880811 0.66225435 1.003362867 1 10.39088473 RS(ph)SPPGHYYQK ddPTM_HeLa_CUDC101_4h_R1 2 RSSPPGHYYQK 11 1 D6RI08;D6RDK1;D6RIV2;D6R9T5;D6RG39;D6RIT9;D6RDK6;D6RBN5;Q9NX40-3;Q9NX40-2;Q9NX40-4;Q9NX40 D6RI08 OCIAD1 OCIA domain-containing protein 1 1 0 RS(0.5)S(0.5)PPGHYYQK;RS(0.5)S(0.5)PPGHYYQK ; 112.71 0.0091405 34047000 16368.5 9910.6 7725.2 9659.3 13266.9 11381.6 10230.5 10071.1 10714.4 8927.9 TRUE FALSE FALSE 14449.80924 10215.93384 8142.847679 10053.24801 12288.22722 11164.51494 10625.09381 11217.55332 10272.7479 8874.796454 1.628184862 1.151117537 0.917525007 1.132786319 1.384620738 1.258002367 1.197221127 1.263978658 1.157519268 1 13.11549832 RT(ph)SSEELRDATSLLAAGEGGLLDEVEPLRPDELER ddPTM_HeLa_CUDC101_4h_R1 1 RTSSEELRDATSLLAAGEGGLLDEVEPLRPDELER 35 3 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 0 RT(0.284)S(0.284)S(0.284)EELRDAT(0.073)S(0.073)LLAAGEGGLLDEVEPLRPDELER 58.087 0.00039899 23036000 135.42 0 212.83 236.37 203.89 150.94 157.18 163.05 143.26 135.65 TRUE FALSE FALSE 119.5462729 0 224.3362336 246.0101903 188.8494409 148.061071 163.2424853 181.6109529 137.3547622 134.8431478 0.886558011 0 1.663682859 1.824417439 1.400511958 1.098024434 1.210610164 1.346831159 1.018626192 1 7.075138401 RTES(ph)VPSDINNPVDR ddPTM_HeLa_CUDC101_4h_R1 3 RTESVPSDINNPVDR 15 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 0 RT(0.023)ES(0.977)VPSDINNPVDR;RT(0.004)ES(0.951)VPS(0.045)DINNPVDR;RT(0.112)ES(0.888)VPSDINNPVDR ;; 188.41 1.09E-10 179810000 4029.48 3359.07 3628.03 3588.47 3955.39 3817.37 3053 3385.67 3476.43 3638.23 TRUE FALSE FALSE 3557.150463 3462.558965 3824.172276 3734.823317 3663.60876 3744.560027 3170.755233 3771.080987 3333.130084 3616.589646 0.983564853 0.957409965 1.057397341 1.032692034 1.013000953 1.035384269 0.876725187 1.04271741 0.921622415 1 11.8204142 RTPT(ph)MPQEEAAACPPHILPPEK ddPTM_HeLa_CUDC101_4h_R1 1 RTPTMPQEEAAACPPHILPPEK 22 1 Q9NYV4 Q9NYV4 CDK12 Cyclin-dependent kinase 12 1 0 RT(0.113)PT(0.887)MPQEEAAACPPHILPPEK 77.847 0.0012944 22004000 4385.6 3806.3 3781.4 3877.1 3781.9 3978.8 3957.9 3578.1 3813.8 3811 TRUE FALSE FALSE 3871.526616 3923.567591 3985.833922 4035.224896 3502.916772 3902.911019 4110.557529 3985.416441 3656.59355 3788.332003 1.02196075 1.035697924 1.052134269 1.065171926 0.924659393 1.030245242 1.085057362 1.052024067 0.965225209 1 11.88734706 S(ph)ASPEHPQKPR ddPTM_HeLa_CUDC101_4h_R1 1 SASPEHPQKPR 11 1 Q96PX6 Q96PX6 CCDC85A Coiled-coil domain-containing protein 85A 1 0 S(0.563)AS(0.437)PEHPQKPR 66.393 0.038332 1519800 667.02 495.26 739.1 694.12 878.15 770.7 663.63 560.27 773.98 825.47 TRUE FALSE FALSE 588.8329267 510.5183736 779.0579817 722.4292138 813.370624 756.0001816 689.2264314 624.0488721 742.0762168 820.5600677 0.717598808 0.622158442 0.949422245 0.880409908 0.99123837 0.921322169 0.839946347 0.76051577 0.904353314 1 9.680465137 S(ph)ATEAELGFAVCPAQR ddPTM_HeLa_CUDC101_4h_R1 2 SATEAELGFAVCPAQR 16 0 H7C4B0 H7C4B0 TOP3B DNA topoisomerase 1 0 S(0.917)AT(0.083)EAELGFAVCPAQR;S(0.838)AT(0.162)EAELGFAVCPAQR ; 94.309 0.0064053 5383000 0 54.322 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 55.99559643 0 0 0 0 0 0 0 0 0 S(ph)EPAVGPPR ddPTM_HeLa_CUDC101_4h_R1 2 SEPAVGPPR 9 0 O94875-12;O94875-11;O94875-9;O94875-4;O94875-10;O94875-5;O94875-3;H7BXR3;O94875-8;H7BZX1;O94875-2;O94875-7;O94875;H7C1R7;H7BZK1 O94875-12 SORBS2 Sorbin and SH3 domain-containing protein 2 1 0 S(1)EPAVGPPR;S(1)EPAVGPPR ; 119.22 0.0058853 27113000 2461.42 1676.32 2094.53 2462.61 1703.83 1843.48 1485 1307.26 1769.89 1905.98 TRUE FALSE FALSE 2172.896079 1727.965432 2207.766627 2563.04588 1578.141855 1808.31869 1542.276947 1456.073194 1696.934385 1894.643146 1.146862977 0.912026856 1.165267788 1.352785555 0.832949391 0.954437617 0.814019754 0.768521079 0.895648549 1 10.88771043 S(ph)ES(ph)PQRS(ph)SMNNGSPTALS(ph)GSKTNSPK ddPTM_HeLa_CUDC101_4h_R1 1 SESPQRSSMNNGSPTALSGSKTNSPK 26 2 D6RCP5;Q8N264-3;Q8N264-2;Q8N264 D6RCP5 ARHGAP24 Rho GTPase-activating protein 24 4 0 S(0.691)ES(0.691)PQRS(0.691)S(0.663)MNNGS(0.24)PT(0.191)ALS(0.56)GS(0.134)KT(0.134)NS(0.005)PK 43.349 0.0027441 0 1367.6 1227.7 1658.5 1258.7 1408.1 1487 1432 1161.6 1282.1 1442.6 TRUE FALSE FALSE 1207.292001 1265.523982 1748.163527 1310.035227 1304.227268 1458.637953 1487.23272 1293.831849 1229.251295 1434.019351 0.8418938 0.882501328 1.219065507 0.913540829 0.909490703 1.017167552 1.037107846 0.902241555 0.857206909 1 10.48584878 S(ph)EWNTVER ddPTM_HeLa_CUDC101_4h_R1 1 SEWNTVER 8 0 B5MCF9;O00541;O00541-2 B5MCF9 PES1 Pescadillo homolog 1 0 S(1)EWNTVER 87.323 0.0022758 0 1215.8 840.4 1075.6 964.16 792.56 990.77 969.05 920.08 1150.4 896.16 TRUE FALSE FALSE 1073.285767 866.2917279 1133.75019 1003.482612 734.0944278 971.872713 1006.426583 1024.818188 1102.980025 890.8296005 1.204816012 0.972455032 1.272690298 1.126458541 0.824057067 1.090974876 1.129763293 1.150408774 1.238149276 1 9.799005687 S(ph)FEVEEVETPNS(ph)TPPRR ddPTM_HeLa_CUDC101_4h_R1 1 SFEVEEVETPNSTPPRR 17 1 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 2 0 S(0.992)FEVEEVET(0.009)PNS(0.66)T(0.34)PPRR 101.89 0.0014146 8008000 1353.8 1276.5 1065.4 1170.5 1628.1 1679.4 1314.9 668.47 1504.7 1350.9 TRUE FALSE FALSE 1195.109616 1315.827452 1122.998747 1218.238049 1507.998307 1647.368243 1365.616133 744.5659228 1442.675629 1342.864787 0.88997018 0.979865929 0.836270902 0.907193383 1.12297107 1.226756602 1.016942396 0.554460829 1.0743268 1 10.39109833 S(ph)FQS(ph)LACS(ph)PGLPAADRLS(ph)YSGRPGSR ddPTM_HeLa_CUDC101_4h_R1 1 SFQSLACSPGLPAADRLSYSGRPGSR 26 2 Q96JY6;Q96JY6-3;Q96JY6-5;A0A087WXJ0;C9K0F0;C9JSR2;C9JS55;Q96JY6-4 Q96JY6 PDLIM2 PDZ and LIM domain protein 2 4 0 S(0.998)FQS(0.997)LACS(0.995)PGLPAADRLS(0.619)Y(0.176)S(0.199)GRPGS(0.015)R 42.209 0.0028596 0 1518.4 1472.9 1409.1 1521.1 1861.9 1285.1 1306.8 1100 1456.2 1416 TRUE FALSE FALSE 1340.415454 1518.278303 1485.280208 1583.137033 1724.551346 1260.588859 1357.203714 1225.219554 1396.17482 1407.577569 0.952285319 1.078646276 1.055203096 1.124724539 1.225190984 0.895573279 0.964212377 0.870445495 0.991899026 1 10.45899871 S(ph)FRDLRNMS(ph)PRLT(ph)S(ph)R ddPTM_HeLa_CUDC101_4h_R1 4 SFRDLRNMSPRLTSR 15 3 I3L257;I3L2E1 I3L257 CLUAP1 4 0 S(1)FRDLRNMS(1)PRLT(1)S(1)R;S(1)FRDLRNMS(1)PRLT(1)S(1)R;S(1)FRDLRNMS(1)PRLT(1)S(1)R;S(1)FRDLRNMS(1)PRLT(1)S(1)R ;;; 85.855 0.0056372 1338721000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)FTLDDESLK ddPTM_HeLa_CUDC101_4h_R1 2 SFTLDDESLK 10 0 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 0 S(0.999)FTLDDESLK;S(1)FTLDDESLK ; 126.71 0.00027539 10642000 2934.2 2369.55 1935.77 2303.76 2363.76 2333.04 2096.8 2048.75 2514.85 2022.89 TRUE FALSE FALSE 2590.257524 2442.553027 2040.423582 2397.717291 2189.390134 2288.541149 2177.674278 2281.971419 2411.186819 2010.85776 1.288135628 1.21468215 1.014703089 1.192385328 1.088784188 1.138092009 1.082957891 1.134824881 1.199083727 1 10.97359532 S(ph)GEQITSS(ph)PVSPK ddPTM_HeLa_CUDC101_4h_R1 1 SGEQITSSPVSPK 13 0 A0A087WZV0;O43314-2;O43314;A0A087WWN8 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 2 0 S(1)GEQIT(0.013)S(0.146)S(0.827)PVS(0.014)PK 140.8 0.0070048 11604000 3145.1 3132.7 3103.2 3276.8 2952.9 3288.7 3267.6 2877.9 3488.7 3498.5 TRUE FALSE FALSE 2776.436146 3229.214774 3270.968379 3410.442068 2735.07045 3225.973527 3393.632427 3205.508503 3344.894309 3477.690766 0.798356246 0.928551441 0.940557571 0.98066283 0.786461659 0.92761943 0.975829266 0.921734771 0.96181476 1 11.76391394 S(ph)GSGGGSAKEPQEER ddPTM_HeLa_CUDC101_4h_R1 1 SGSGGGSAKEPQEER 15 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 0 S(0.754)GS(0.246)GGGSAKEPQEER 101.3 0.026419 17611000 693.33 499.81 522.01 874.52 413.97 403.3 480.48 449.17 605.3 582.39 TRUE FALSE FALSE 612.0589084 515.2085537 550.2314396 910.1867056 383.4322578 395.6077244 499.0122745 500.3016972 580.3492778 578.9259184 1.057231831 0.889938656 0.950434973 1.572198923 0.662316621 0.683347751 0.861962228 0.864189495 1.002458621 1 9.177234937 S(ph)GSMDPSGAHPSVR ddPTM_HeLa_CUDC101_4h_R1 1 SGSMDPSGAHPSVR 14 0 Q07666-2;Q07666;Q07666-3 Q07666-2 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 0 S(0.845)GS(0.155)MDPSGAHPSVR 107.03 0.0027549 31178000 5434.4 2921.8 3494.4 3051.8 6292.4 4466.9 4235.1 3391.1 5247.6 4669.1 TRUE FALSE FALSE 4797.38787 3011.817195 3683.317834 3176.265595 5828.222188 4381.701325 4398.449226 3777.129117 5031.291707 4641.327986 1.033623972 0.648912812 0.79359137 0.684344137 1.255722975 0.944061988 0.947670417 0.813803534 1.084019859 1 12.18032194 S(ph)GVLPSQPT(ph)TMGTEYGLVS(ph)GENLKR ddPTM_HeLa_CUDC101_4h_R1 1 SGVLPSQPTTMGTEYGLVSGENLKR 25 1 E7EVA0 E7EVA0 MAP4 Microtubule-associated protein 3 0 S(0.951)GVLPS(0.309)QPT(0.361)T(0.361)MGT(0.024)EY(0.47)GLVS(0.525)GENLKR 45.011 0.0026847 0 156.26 242.46 220.19 235.31 158.4 348.11 196.86 220.1 280.91 257.83 TRUE FALSE FALSE 137.9434397 249.9299052 232.0941374 244.9069589 146.7151476 341.4703817 204.4529561 245.1552943 269.3307709 256.2964157 0.538218372 0.975159581 0.90556919 0.955561389 0.572443228 1.332326013 0.7977207 0.956530327 1.050856565 1 8.001669492 S(ph)IEDLHR ddPTM_HeLa_CUDC101_4h_R1 2 SIEDLHR 7 0 Q96PY5;Q96PY5-3 Q96PY5 FMNL2 Formin-like protein 2 1 0 S(1)IEDLHR;S(1)IEDLHR ; 114.89 0.0083133 117662000 14115.8 12480.6 11892.2 12843.1 12962.1 12972 11778.2 11683.4 12583.1 12890.4 TRUE FALSE FALSE 12461.16732 12865.11249 12535.1283 13366.89713 12005.91171 12724.58071 12232.48912 13013.39103 12064.41929 12813.72733 0.972485757 1.004010165 0.978257769 1.043170093 0.936957015 0.993042882 0.954639412 1.015582016 0.941523023 1 13.64540258 S(ph)ISESFLTVK ddPTM_HeLa_CUDC101_4h_R1 1 SISESFLTVK 10 0 J3KSQ9;K7EP00;F5H527;Q76I76-3;Q76I76-4;Q76I76 J3KSQ9 SSH2 Protein phosphatase Slingshot homolog 2 1 0 S(1)ISESFLTVK 133.07 0.0019626 15836000 1539.8 1015.3 1296.5 1091 1359.4 1188.1 1026.7 1456.7 1148.9 1228 TRUE FALSE FALSE 1359.306978 1046.58019 1366.592712 1135.495696 1259.11977 1165.438972 1066.300163 1622.52484 1101.541856 1220.695801 1.113550957 0.857363635 1.119519466 0.930203655 1.031477104 0.954733334 0.873518334 1.329180323 0.902388502 1 10.25348801 S(ph)LEGGGCPAR ddPTM_HeLa_CUDC101_4h_R1 2 SLEGGGCPAR 10 0 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 0 S(1)LEGGGCPAR;S(1)LEGGGCPAR ; 94.465 0.022259 174605000 1250.68 815.85 974.12 874.15 872.26 1106.84 1005.31 608.52 1136.6 851.9 TRUE FALSE FALSE 1104.077186 840.9853715 1026.783874 909.8016154 807.9151176 1085.728871 1044.085143 677.7914571 1089.748867 846.8328609 1.303772252 0.993094872 1.212498854 1.074357949 0.954043182 1.282105267 1.232929415 0.800383982 1.286852362 1 9.725933443 S(ph)LESINSR ddPTM_HeLa_CUDC101_4h_R1 4 SLESINSR 8 0 E5RJH3;E5RI99;P62888;A0A0C4DH44 E5RJH3 RPL30 60S ribosomal protein L30 1 0 S(1)LESINSR;S(1)LESINSR;S(0.997)LES(0.003)INSR;S(1)LESINSR ;;; 119.34 0.0075868 368882000 4025.24 3754.45 3545.46 3600.26 4049.79 3566.81 3389.78 3406.34 3900.34 3945.9 TRUE FALSE FALSE 3553.407469 3870.120154 3737.138292 3747.094164 3751.04506 3498.779042 3520.52495 3794.103977 3739.566334 3922.429611 0.905920009 0.986664016 0.952761085 0.955299275 0.956306532 0.891992818 0.897536807 0.967284146 0.9533801 1 11.93753184 S(ph)LGEEIQESLK ddPTM_HeLa_CUDC101_4h_R1 4 SLGEEIQESLK 11 0 P48681 P48681 NES Nestin 1 0 S(1)LGEEIQESLK;S(1)LGEEIQESLK;S(1)LGEEIQESLK;S(1)LGEEIQESLK ;;; 179.83 8.13E-08 16756800 7152.9 5994.55 5740 5868.31 6401.6 5882 5927.9 5723.4 5926.3 5872.1 TRUE FALSE FALSE 6314.447905 6179.23498 6050.321763 6107.645047 5929.366722 5769.81065 6156.541089 6374.928721 5682.015406 5837.172488 1.08176483 1.058600717 1.036515843 1.046336229 1.015794331 0.988459851 1.054712894 1.092126151 0.973419137 1 12.51105399 S(ph)LS(ph)PVAAPPLREPR ddPTM_HeLa_CUDC101_4h_R1 1 SLSPVAAPPLREPR 14 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 2 0 S(1)LS(1)PVAAPPLREPR 98.182 0.0096832 8756800 2246.7 1804.7 2011.7 1964.9 2358.5 2299.1 2005.5 1721.7 2313.7 2046.4 TRUE FALSE FALSE 1983.345232 1860.300668 2120.458587 2045.037115 2184.518154 2255.248498 2082.852807 1917.691369 2218.328307 2034.227922 0.974986731 0.914499623 1.042389874 1.005313659 1.073880724 1.108650842 1.023903361 0.942712146 1.090501356 1 10.99026562 S(ph)LSASPALGSTK ddPTM_HeLa_CUDC101_4h_R1 1 SLSASPALGSTK 12 0 O95544;O95544-2 O95544 NADK NAD kinase 1 0 S(0.98)LS(0.012)AS(0.008)PALGSTK 170.95 8.78E-07 82512000 3164.1 2779.8 2094.6 2287.8 2783.6 2842.2 2545.3 2443.3 2332.1 2580.8 TRUE FALSE FALSE 2793.208994 2865.442343 2207.840412 2381.106373 2578.259374 2787.98977 2643.473074 2721.435396 2235.969851 2565.449287 1.088779657 1.116935875 0.860605752 0.928144004 1.004993311 1.086745228 1.030413303 1.060802648 0.871570474 1 11.32499579 S(ph)NLKDPS(ph)YGWEVHLPRS(ph)RR ddPTM_HeLa_CUDC101_4h_R1 1 SNLKDPSYGWEVHLPRSRR 19 3 Q03112-9 Q03112-9 MECOM MDS1 and EVI1 complex locus protein EVI1 3 0 S(0.998)NLKDPS(0.537)Y(0.465)GWEVHLPRS(1)RR 46.249 0.0033019 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)PAAGSSQSSGWPNDVDAGPASLKK ddPTM_HeLa_CUDC101_4h_R1 2 SPAAGSSQSSGWPNDVDAGPASLKK 25 1 K7EN08;Q14938-6;Q14938-5;Q14938-3;Q14938-4;Q14938 K7EN08 NFIX Nuclear factor 1;Nuclear factor 1 X-type 1 0 S(0.906)PAAGS(0.027)S(0.027)QS(0.02)S(0.02)GWPNDVDAGPASLKK;S(0.987)PAAGS(0.007)S(0.002)QS(0.002)S(0.002)GWPNDVDAGPASLKK ; 140.42 6.14E-11 52613000 4797.3 4212.2 4400.1 3755.9 4921.1 4131.7 4251.5 3845.3 5053.8 4406.3 TRUE FALSE FALSE 4234.967766 4341.972889 4637.982716 3909.081836 4558.080257 4052.894706 4415.481779 4283.033409 4845.480225 4380.091132 0.966867501 0.991297386 1.058878132 0.892465869 1.040635941 0.925299174 1.008079888 0.977841164 1.106251007 1 12.09674517 S(ph)PGEYINIDFGEPGAR ddPTM_HeLa_CUDC101_4h_R1 3 SPGEYINIDFGEPGAR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 0 S(1)PGEYINIDFGEPGAR;S(0.865)PGEY(0.135)INIDFGEPGAR;S(1)PGEYINIDFGEPGAR ;; 261.06 6.15E-70 90894000 1434.69 1390.01 1027.58 1112.52 1160.83 1351.78 1244.78 897.74 1315.5 1184.41 TRUE FALSE FALSE 1266.517813 1432.834561 1083.134083 1157.893374 1075.197884 1325.997049 1292.791582 999.9350928 1261.274533 1177.365077 1.075722253 1.216984085 0.919964508 0.983461627 0.913223863 1.126241193 1.098037989 0.849299094 1.071268851 1 10.20134602 S(ph)PLSSILFSALDSDTR ddPTM_HeLa_CUDC101_4h_R1 2 SPLSSILFSALDSDTR 16 0 A0A1W2PRB5;A0A0J9YVS1;A0A0G2JQF5;A0A3B3IT55;A0A0G2JNB1;A0A0G2JQF4;A0A0G2JNT7;Q7Z3B3;A0A1W2PRR3;I3L233;A0A1W2PPV8 A0A1W2PRB5 KANSL1 KAT8 regulatory NSL complex subunit 1 1 0 S(1)PLSSILFSALDSDTR;S(0.986)PLS(0.01)S(0.003)ILFSALDSDTR ; 130.29 0.0004807 91032000 567.06 871.02 641.15 592.28 756.66 692.91 610.45 761.71 475.8 0 TRUE FALSE FALSE 500.5900864 897.8550938 675.8125084 616.4357385 700.8426993 679.6938962 633.995261 848.4199875 456.1873226 0 0 S(ph)PQPDPVDTPASTK ddPTM_HeLa_CUDC101_4h_R1 2 SPQPDPVDTPASTK 14 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 0 S(1)PQPDPVDTPASTK;S(1)PQPDPVDTPASTK ; 103.6 0.0057744 24001000 3285.1 3914.8 5015.6 4901.1 2638.15 2890.1 2416.09 2312.79 3803.8 3395.1 TRUE FALSE FALSE 2900.025558 4035.410348 5286.758507 5100.988042 2443.53893 2834.976158 2509.279401 2576.068665 3647.005754 3374.905794 0.859290817 1.195710516 1.56649069 1.511446053 0.724031745 0.840016383 0.743510946 0.76330091 1.080624461 1 11.72063152 S(ph)PS(ph)PYSRR ddPTM_HeLa_CUDC101_4h_R1 1 SPSPYSRR 8 1 Q9NYV4;J3QSD7;Q9NYV4-3;Q9NYV4-2;A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 Q9NYV4;Q9NYV4-2;A0A2R8Y4Z0 CDK12;CDK13 Cyclin-dependent kinase 12;Cyclin-dependent kinase 13 2 0 S(0.973)PS(0.709)PY(0.315)S(0.003)RR 68.536 0.0024536 0 539.57 485.06 724.47 704.37 540.59 498.25 706.37 408.77 639.85 609.59 TRUE FALSE FALSE 476.3224225 500.0041237 763.6370396 733.0972531 500.7117527 488.7467114 733.6149275 455.3027245 613.4751122 605.9641316 0.786057124 0.825138152 1.260201718 1.209803048 0.826305926 0.806560464 1.210657346 0.751369101 1.012395091 1 9.24308859 S(ph)PSAIPEQNHSLNDQAK ddPTM_HeLa_CUDC101_4h_R1 2 SPSAIPEQNHSLNDQAK 17 0 Q13129 Q13129 RLF Zinc finger protein Rlf 1 0 S(0.759)PS(0.241)AIPEQNHSLNDQAK;S(0.958)PS(0.042)AIPEQNHSLNDQAK ; 149.72 7.91E-05 88880000 15007.7 12185.5 11652.1 12216.2 11692.6 12374.9 11788.1 10466.3 11746.3 11754.8 TRUE FALSE FALSE 13248.52016 12560.92081 12282.04777 12714.42944 10830.06019 12138.8694 12242.77097 11657.74129 11262.11254 11684.88193 1.133817204 1.074971993 1.051105852 1.088109364 0.926843785 1.038852551 1.047744517 0.997677286 0.963819114 1 13.51235554 S(ph)PSPSLSSLLLPSSPGPR ddPTM_HeLa_CUDC101_4h_R1 1 SPSPSLSSLLLPSSPGPR 18 0 Q8TER5;Q8TER5-3;Q8TER5-2;Q8TER5-4 Q8TER5;Q8TER5-4 ARHGEF40 Rho guanine nucleotide exchange factor 40 1 0 S(0.776)PS(0.221)PS(0.003)LSSLLLPSSPGPR 139.67 1.22E-05 0 392.81 435.93 321.26 391.41 422.12 434.2 331.89 313.83 272.2 376.89 TRUE FALSE FALSE 346.7654073 449.3604866 338.6282874 407.3733916 390.9810486 425.9183584 344.6911085 349.5551387 260.9798008 374.6482415 0.925575964 1.199419714 0.903856604 1.087349002 1.043595045 1.136848679 0.920039307 0.933022232 0.696599562 1 8.54939287 S(ph)PSPYYSR ddPTM_HeLa_CUDC101_4h_R1 1 SPSPYYSR 8 0 Q13595;Q13595-4;Q13595-3;P62995;H7C2L4;H7BXF3;P62995-3 Q13595;P62995 TRA2A;TRA2B Transformer-2 protein homolog alpha;Transformer-2 protein homolog beta 1 0 S(1)PSPYYSR 106.88 0.013037 49578000 838.42 792.09 999.09 941.94 831.32 794.97 867.77 869.42 903.27 954.51 TRUE FALSE FALSE 740.1416786 816.493354 1053.103827 980.3563846 769.9951798 779.8072718 901.2401796 968.3912585 866.0368283 948.8325321 0.780055124 0.860524198 1.109894309 1.033223832 0.811518528 0.821859754 0.949841146 1.020613465 0.912739392 1 9.890009665 S(ph)PTMEQAVQTASAHLPAPAAVGR ddPTM_HeLa_CUDC101_4h_R1 3 SPTMEQAVQTASAHLPAPAAVGR 23 0 Q8ND56-3;Q8ND56-2;Q8ND56 Q8ND56-3 LSM14A Protein LSM14 homolog A 1 0 S(0.758)PT(0.242)MEQAVQTASAHLPAPAAVGR;S(0.952)PT(0.048)MEQAVQTASAHLPAPAAVGR;S(0.812)PT(0.188)MEQAVQTASAHLPAPAAVGR ;; 153.77 9.63E-08 109862000 2262.24 1409.98 1915.82 1890.35 2416.08 2136.51 1848.53 1711.42 2070 2068.9 TRUE FALSE FALSE 1997.063657 1453.419813 2019.395024 1967.446644 2237.850592 2095.759631 1919.828421 1906.241135 1984.673724 2056.594091 0.971053873 0.706712044 0.981912295 0.956652872 1.08813431 1.019043885 0.933498949 0.926892255 0.965029382 1 11.00604136 S(ph)PTSSPTPQRR ddPTM_HeLa_CUDC101_4h_R1 1 SPTSSPTPQRR 11 1 A0A0D9SFB1;A0A0U1RQP1;A0A0D9SFE4;Q05193-5;Q05193-3;Q05193-2;Q05193 A0A0D9SFB1 DNM1 Dynamin-1 1 0 S(0.951)PT(0.046)S(0.003)SPTPQRR 75.89 0.025616 822970 249.23 0 135.59 323.82 192.14 56.187 283.82 124.56 158.79 139.28 TRUE FALSE FALSE 220.0156372 0 142.9204055 337.0267793 177.966215 55.11532659 294.7670325 138.7394069 152.244609 138.4515564 1.589116388 0 1.032277349 2.434257787 1.285404221 0.398083835 2.1290265 1.00207907 1.099623673 1 7.113237461 S(ph)QEDLNEPIK ddPTM_HeLa_CUDC101_4h_R1 1 SQEDLNEPIK 10 0 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 0 S(1)QEDLNEPIK 94.023 0.0031463 0 1407.1 1145.1 1226.7 1320.7 1045.8 1270.1 1172.1 1160.9 1368.8 1267.8 TRUE FALSE FALSE 1242.161871 1180.379174 1293.019113 1374.563855 968.6534175 1245.874959 1217.30829 1293.052163 1312.377485 1260.259069 0.985640097 0.93661629 1.02599469 1.090699435 0.768614518 0.988586386 0.965919087 1.026020915 1.041355319 1 10.29950462 YAALSVDGEDENEGEDYAE ddPTM_HeLa_CUDC101_4h_R1 7 YAALSVDGEDENEGEDYAE 19 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 ;;;;;; ;;;;;; 194.96 4.44E-16 373249000 43073.1 40385.2 35100.5 35800 40771.5 39805.9 37787.1 39764.3 43851.7 41147.7 FALSE FALSE TRUE 38024.13651 41629.42014 36998.1392 37260.07874 37763.86767 39046.66878 39244.5611 44290.90718 42044.11437 40902.95165 0.929618401 1.017760784 0.904534703 0.91093863 0.923255319 0.954617386 0.95945548 1.082829121 1.027899275 1 15.31991733 -4.261470468 6.964951768 0.957534189 1.084720396 0.444530684 0.041623036 0.076349218 27.57590005 0.005570848 0.0454853 5.48E-05 4.261470468 0.127186207 S(ph)RDS(ph)GDENEPIQER ddPTM_HeLa_CUDC101_4h_R1 1 SRDSGDENEPIQER 14 1 Q8WX93-3;Q8WX93;Q8WX93-8;Q8WX93-2;Q8WX93-9;Q8WX93-5;Q8WX93-4;Q8WX93-7 Q8WX93-3 PALLD Palladin 2 0 S(1)RDS(1)GDENEPIQER 145.79 0.0043913 16155000 3083.8 2760 2514.6 2107.4 2566.9 2446.5 2453.5 2380.4 2883.3 2381.5 TRUE FALSE FALSE 2722.321639 2845.032329 2650.546882 2193.348881 2377.544901 2399.837089 2548.132317 2651.375114 2764.449154 2367.334732 1.149952139 1.201787094 1.119633335 0.926505598 1.004312938 1.013729515 1.076371787 1.119983194 1.167747474 1 11.209048 S(ph)REEDFR ddPTM_HeLa_CUDC101_4h_R1 1 SREEDFR 7 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 1 0 S(1)REEDFR 69.998 0.034979 9204600 1118 905.64 1147.4 1163.5 1018.9 931.04 1000.3 844.06 1236.3 1137 TRUE FALSE FALSE 986.9497348 933.541695 1209.431915 1210.952559 943.7377769 913.2819632 1038.881906 940.1443786 1185.339191 1130.237073 0.873223643 0.825969805 1.07006923 1.071414651 0.834990994 0.808044599 0.919171677 0.831811662 1.048752707 1 10.1424097 YADLTEDQLPSCESLKDTIAR ddPTM_HeLa_CUDC101_4h_R1 1 YADLTEDQLPSCESLKDTIAR 21 1 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 0 0 145.71 9.12E-07 29609000 858.01 739 819.94 839.98 1155.4 864.81 619.84 913.05 758.19 695.97 FALSE FALSE TRUE 757.4353685 761.7677141 864.2684366 874.2380151 1070.168444 848.3151901 643.7474364 1016.987921 726.9370873 691.8303395 1.094828205 1.101090355 1.249249111 1.263659549 1.546865442 1.226189633 0.930498996 1.46999613 1.050744736 1 9.434274473 -6.896973553 1.650644378 1.041411036 1.279044426 0.331814788 0.154162797 0.319194861 1.74562792 0.027318643 0.037547868 1.27E-07 6.896973553 0.23763339 S(ph)RPTSFADELAAR ddPTM_HeLa_CUDC101_4h_R1 2 SRPTSFADELAAR 13 1 Q641Q2;Q641Q2-2;F8W7U3;E7ESD2;A0A087WYF6;A0A0A0MR88;A0A096LPC5;Q9Y4E1-6;Q9Y4E1;J3KP36;Q9Y4E1-3;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1-5;A0A0A0MT65 Q641Q2;A0A0A0MR88 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 0 S(0.577)RPT(0.211)S(0.211)FADELAAR;S(0.989)RPT(0.009)S(0.002)FADELAAR ; 112.57 0.0022189 9318400 4912.5 4103.8 4630.1 4692.2 6789.1 7050.7 5089.7 4761.1 8078.5 6990.8 TRUE FALSE FALSE 4336.664197 4230.233214 4880.417211 4883.568197 6288.281619 6916.219645 5286.011434 5303.084379 7745.500811 6949.218411 0.62405064 0.608735107 0.702297283 0.702750714 0.904890485 0.995251442 0.760662728 0.763119543 1.114585893 1 12.76263501 S(ph)RSWPASPR ddPTM_HeLa_CUDC101_4h_R1 1 SRSWPASPR 9 1 Q86YD1 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 0 S(0.993)RS(0.007)WPASPR 70.816 0.036347 22972000 743.72 469.78 596.56 437.75 477.6 443.82 557.74 388.51 513.65 434.12 TRUE FALSE FALSE 656.542269 484.253365 628.8118381 455.6033371 442.3683995 435.354873 579.2522186 432.736408 492.4771296 431.5378349 1.521401406 1.122157377 1.457141848 1.055766842 1.025097601 1.008845199 1.342297643 1.002777446 1.141214257 1 8.753343243 S(ph)SLGSLQTPEAVTTR ddPTM_HeLa_CUDC101_4h_R1 1 SSLGSLQTPEAVTTR 15 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 0 S(0.903)S(0.097)LGSLQTPEAVTTR 206.13 2.33E-23 46111000 1470.1 1032.5 1373.2 1210.1 1592.9 1570.8 1289.1 1023.4 1273.2 1349.5 TRUE FALSE FALSE 1297.777107 1064.310101 1447.439346 1259.453108 1475.394941 1540.839607 1338.821019 1139.899719 1220.718157 1341.473114 0.967426848 0.793389066 1.078992438 0.938858256 1.099831912 1.148617584 0.998022998 0.849737283 0.909983319 1 10.38960242 YAELLEEHR ddPTM_HeLa_CUDC101_4h_R1 2 YAELLEEHR 9 0 P40222 P40222 TXLNA Alpha-taxilin 0 0 ; ; 183.43 7.28E-11 14264600 13025.1 11804.8 10953.9 11831.6 12126.7 11027.2 10759 11830.6 11749.8 10186.2 FALSE FALSE TRUE 11498.31752 12168.4919 11546.10097 12314.14379 11232.1375 10816.87453 11173.97823 13177.34768 11265.46827 10125.61203 1.135567656 1.201753717 1.140286724 1.21613822 1.109279861 1.068268713 1.103536083 1.301387772 1.11257159 1 13.30572149 -8.846886759 0.68993246 0.997318863 1.156913553 0.188844537 0.071732459 0.514448021 0.45464927 0.04415817 0.014145059 1.42E-09 8.846886759 0.159594691 YAGLLEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 YAGLLEKK 8 1 P43034;I3L495 P43034 PAFAH1B1 Platelet-activating factor acetylhydrolase IB subunit alpha 0 1 YAGLLEK(1)K 101.54 0.012741 314850 269.54 212.1 186.61 65.197 137.62 143.29 219.54 76.042 0 0 FALSE TRUE FALSE 237.9449298 218.6345496 196.6987011 67.85601547 127.4680468 140.556982 228.0077313 84.69831391 0 0 0 YAHVVLR ddPTM_HeLa_CUDC101_4h_R1 4 YAHVVLR 7 0 P62269 P62269 RPS18 40S ribosomal protein S18 0 0 ;;; ;;; 117.56 0.01138 34013800 24760.6 20808.1 20584.7 21010.8 19170.4 21251.5 19665.2 17948.2 19968.8 16500.5 FALSE FALSE TRUE 21858.2 21449.1729 21697.57115 21867.71124 17756.23778 20846.16304 20423.69335 19991.35054 19145.67761 16402.35429 1.332625769 1.307688672 1.322832732 1.333205639 1.082542022 1.270925056 1.245168406 1.218809823 1.167251802 1 14.00161528 -9.338909533 1.031946251 0.998072168 1.267616282 0.357469389 0.086486121 0.267630012 0.504430223 0.053056748 0.013541372 4.58E-10 9.338909533 0.269544114 YALQMEQLNGILLHLESELAQTR ddPTM_HeLa_CUDC101_4h_R1 1 YALQMEQLNGILLHLESELAQTR 23 0 P05783;F8VZY9 P05783 KRT18 "Keratin, type I cytoskeletal 18" 0 0 125.77 1.21E-05 46001000 754 757.68 607.52 573.39 815.64 705.12 785.71 776.55 861.37 670.34 FALSE FALSE TRUE 665.617263 781.0232227 640.3643688 596.7753226 755.4718622 691.6710108 816.0150979 864.9493131 825.863964 666.3527879 0.998896193 1.172086674 0.960999009 0.895584641 1.133741579 1.037995223 1.22459921 1.298035108 1.239379468 1 9.380142377 -4.599890059 1.235065219 1.007137993 1.357104082 0.326868672 0.105556766 0.398386162 0.756409027 0.01087327 0.15124533 2.51E-05 4.599890059 0.349966089 YALTGDEVK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 YALTGDEVKK 10 1 C9JEH7;Q8TD47;P62701;P22090 C9JEH7 RPS4Y1;RPS4Y2;RPS4X "40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1" 0 1 ; YALTGDEVK(1)K;YALTGDEVK(1)K 161.76 0.00039279 8219400 6762.8 3706.3 3029.4 3349.9 6618.7 6108.5 6549 5472.1 6472.7 3674.2 FALSE TRUE FALSE 5970.074836 3820.48671 3193.178527 3486.523402 6130.451687 5991.99054 6801.597124 6095.021745 6205.892566 3652.345695 1.634586464 1.046036446 0.87428157 0.954598412 1.678497108 1.640586911 1.862254477 1.668796509 1.699152568 1 11.83460761 -5.666655304 7.747952408 1.228815753 1.723427314 0.470096655 0.265036177 0.194693273 13.97770397 0.043734413 0.087647123 2.15E-06 5.666655304 0.494611561 S(ph)SPGAGPSDHHSASR ddPTM_HeLa_CUDC101_4h_R1 1 SSPGAGPSDHHSASR 15 0 I3VM54;Q9Y2K7-3;Q9Y2K7;Q9Y2K7-4;Q9Y2K7-5;Q9Y2K7-2 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 S(0.847)S(0.153)PGAGPSDHHSASR 105.5 0.0022313 397080 0 100.99 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 104.1013822 0 0 0 0 0 0 0 0 0 YALYDATYETK ddPTM_HeLa_CUDC101_4h_R1 2 YALYDATYETK 11 0 P23528;G3V1A4;E9PP50;E9PK25;E9PQB7;E9PLJ3;Q9Y281;Q9Y281-3 P23528;Q9Y281 CFL1;CFL2 Cofilin-1;Cofilin-2 0 0 ; ; 199.11 1.34E-15 115952000 5021.2 4647.3 4513.8 4357.4 4700.3 4333.5 4027.4 4195.9 4568.8 4881.3 FALSE FALSE TRUE 4432.622548 4790.477805 4757.829681 4535.113606 4353.568233 4250.845708 4182.738167 4673.544296 4380.47213 4852.265811 0.913516019 0.987266154 0.980537726 0.934638328 0.897223772 0.87605376 0.862017526 0.96316741 0.902768377 1 12.24444287 -5.915308968 3.314901594 0.962075139 0.895098261 0.327230574 0.037983511 0.200584065 4.419124535 0.006065122 0.011472126 1.22E-06 5.915308968 -0.066976877 YAPDK(ac)TSTVLTR ddPTM_HeLa_CUDC101_4h_R1 1 YAPDKTSTVLTR 12 1 Q9NR12-2;Q9NR12 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 0 1 YAPDK(1)TSTVLTR 116.03 0.003123 1635300 132.03 125.13 183.29 0 186.54 141.6 199.76 280.65 174.32 93.701 FALSE TRUE FALSE 116.5536435 128.985107 193.1992118 0 172.7793158 138.8992159 207.4648101 312.5980616 167.1344558 93.14366228 1.251331982 1.38479746 2.074206737 0 1.85497662 1.49123636 2.227363677 3.356085147 1.794372818 1 6.541385703 -4.042085617 0.951432763 1.160135711 5.367662996 0.553819653 0.554289307 1.260149727 0.657475753 0.073697118 5.999389972 9.08E-05 4.042085617 4.207527286 S(ph)SPLSWR ddPTM_HeLa_CUDC101_4h_R1 1 SSPLSWR 7 0 A0A0A0MRJ3;Q8NEY1-7;Q8NEY1-4;Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6 A0A0A0MRJ3 NAV1 Neuron navigator 1 1 0 S(0.499)S(0.499)PLS(0.001)WR 116.25 0.012629 54354000 3716.6 3406.6 3256.9 3194.2 4221.7 2989.8 2917.4 2858.7 3158.7 3694.6 TRUE FALSE FALSE 3280.945782 3511.553308 3432.977866 3324.473283 3910.273602 2932.774546 3029.925095 3184.122853 3028.497049 3672.624355 0.893351856 0.956142793 0.93474789 0.905203735 1.064708291 0.7985501 0.825002724 0.866988438 0.824613888 1 11.84259563 YAPSEAGLHEMDIR ddPTM_HeLa_CUDC101_4h_R1 4 YAPSEAGLHEMDIR 14 0 P21333-2;P21333;Q60FE5;A0A087WWY3;H0Y5F3 P21333-2 FLNA Filamin-A 0 0 ;;; ;;; 206.46 1.32E-23 142414000 17481 11908.9 9844.9 10781.7 14097.5 14107.2 13123.9 13058.2 14059.2 13563 FALSE FALSE TRUE 15431.90368 12275.79909 10377.14507 11221.42433 13057.55551 13838.12866 13630.09322 14544.6927 13479.67383 13482.32667 1.144602416 0.910510433 0.769685035 0.832306218 0.968494224 1.026390251 1.010960018 1.078796936 0.999803235 1 13.71878187 -10.34223138 21.98606126 0.999998515 1.015423165 0 0.113124622 91.4703267 292048.9694 0.219715918 0.019253443 4.55E-11 10.34223138 0.01542465 S(ph)SPVVNDGVVR ddPTM_HeLa_CUDC101_4h_R1 2 SSPVVNDGVVR 11 0 H0YAM1;H0Y8R1;F5H5I6;H0YAK1;Q12849-5;Q12849 H0YAM1 GRSF1 G-rich sequence factor 1 1 0 S(0.982)S(0.018)PVVNDGVVR;S(0.901)S(0.099)PVVNDGVVR ; 179.83 8.13E-08 33664000 3803 2932.8 2605.1 2965.8 3492.3 2916.9 2655.4 2764.7 2941.9 2755.3 TRUE FALSE FALSE 3357.218105 3023.156092 2745.939586 3086.758143 3234.679987 2861.264992 2757.819667 3079.422273 2820.633637 2738.911353 1.225749092 1.103780189 1.002566068 1.127001843 1.181009376 1.044672362 1.006903588 1.124323454 1.029837506 1 11.41938686 S(ph)VNDLLDETSTFKPGHAR ddPTM_HeLa_CUDC101_4h_R1 1 SVNDLLDETSTFKPGHAR 18 1 C9J119;Q6ZWE6-3;Q6ZWE6-2;Q6ZWE6 C9J119 PLEKHM3 Pleckstrin homology domain-containing family M member 3 1 0 S(1)VNDLLDETSTFKPGHAR 74.029 0.0020867 0 368.93 289.54 400.18 392.61 230.25 423.85 417.05 222.42 456.79 316.5 TRUE FALSE FALSE 325.6845847 298.4603842 421.8149413 408.6223328 213.2649162 415.7657674 433.1357582 247.7393937 437.9609229 314.6174439 1.035176501 0.948645379 1.340723312 1.29879109 0.67785471 1.321496234 1.376706113 0.787430572 1.392042721 1 8.297454853 YASICQQNGIVPIVEPEILPDGDHDLKR ddPTM_HeLa_CUDC101_4h_R1 3 YASICQQNGIVPIVEPEILPDGDHDLKR 28 1 P04075;H3BQN4;P04075-2;H3BPS8;P09972 P04075;P09972 ALDOA;ALDOC Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase C 0 0 ;; ;; 114.05 1.01E-10 191554000 3826.45 3037.18 2895.18 3351.62 3619.75 3411.74 3307.64 3379.5 3379.59 1925.33 FALSE FALSE TRUE 3377.919332 3130.751916 3051.702188 3488.313551 3352.728254 3346.666744 3435.216783 3764.20862 3240.28187 1913.878052 1.764960588 1.635815779 1.594512349 1.822641494 1.751798267 1.748631132 1.794898468 1.966796482 1.693045107 1 10.90228319 -10.50830304 0.311852222 0.149781317 1.830958609 0.060190374 0.238379646 1.5306638 0.103366943 0.994089054 0.040755572 3.10E-11 10.50830304 1.681177292 S(ph)Y(ph)FFELGT(ph)YDPGLDVWGGENMELSFK ddPTM_HeLa_CUDC101_4h_R1 1 SYFFELGTYDPGLDVWGGENMELSFK 26 0 Q7Z7M9 Q7Z7M9 GALNT5 Polypeptide N-acetylgalactosaminyltransferase 5 3 0 S(0.99)Y(0.99)FFELGT(0.525)Y(0.493)DPGLDVWGGENMELS(0.001)FK 42.325 0.0028582 0 1035.2 616.02 921.61 777.43 794.07 819.96 713.84 935.49 591.42 808.8 TRUE FALSE FALSE 913.8554253 634.998846 971.4350243 809.1369557 735.4930381 804.3206291 741.3730479 1041.9824 567.0414173 803.9892216 1.136651339 0.789810148 1.208268716 1.00640274 0.9148046 1.000412204 0.922118143 1.296015385 0.70528485 1 9.65103235 YDDIK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 YDDIKK 6 1 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 1 ; YDDIK(1)K;YDDIK(1)K 94.006 0.026982 32888000 18792.2 15755.2 18164.8 17179.2 18921.3 18954.4 18080.8 17232.9 16871.6 17570.9 FALSE TRUE FALSE 16589.4068 16240.59904 19146.84403 17879.84203 17525.5134 18592.8764 18778.18251 19194.62368 16176.14551 17466.38751 0.949790379 0.929820149 1.096210881 1.023671439 1.003385124 1.06449467 1.075103968 1.0989464 0.926130003 1 14.09229363 -5.547790469 0.620402758 0.975314887 1.100876022 0.537638441 0.042743394 0.734872781 0.432561144 0.008763107 0.049480828 2.83E-06 5.547790469 0.125561135 YDDMAACMK ddPTM_HeLa_CUDC101_4h_R1 2 YDDMAACMK 9 0 P63104;E7EX29;E5RGE1;E5RIR4;E9PD24;E7EVZ2;E7ESK7 P63104 YWHAZ 14-3-3 protein zeta/delta 0 0 ; ; 141.39 0.0081771 43699000 3018.1 2246.01 1918.99 2401 2629.7 2409.9 2436.9 2238.5 2415.2 2246.1 FALSE FALSE TRUE 2664.322893 2315.206906 2022.736404 2498.923158 2435.71227 2363.935173 2530.892049 2493.321792 2315.644434 2232.740097 1.193297373 1.036935248 0.905943512 1.119218113 1.09090721 1.058759672 1.133536345 1.116709372 1.037131208 1 11.12459961 -4.754819881 24.50718431 1.076208001 1.125122875 0.073649284 0.073545142 343.2177978 1270637.977 0.012574783 0.044928018 1.76E-05 4.754819881 0.048914874 YDDMATCMK ddPTM_HeLa_CUDC101_4h_R1 4 YDDMATCMK 9 0 P27348;E9PG15 P27348 YWHAQ 14-3-3 protein theta 0 0 ;;; ;;; 145.34 0.00069135 41594000 6833 6519.9 5874.7 6642.2 6868.8 6053 6169.9 6000.5 7213.8 5763.6 FALSE FALSE TRUE 6032.046098 6720.770391 6192.304052 6913.097626 6362.102309 5937.54911 6407.87511 6683.572665 6916.444111 5729.317851 1.052838445 1.173048968 1.080810004 1.206617927 1.110446736 1.036344861 1.11843596 1.166556445 1.207202025 1 12.48414766 -7.553899339 2.368020096 1.019557934 1.124184694 0 0.075769524 0.170081588 1.943295441 0.009040455 0.009647289 2.79E-08 7.553899339 0.10462676 YDDPEVQK(ac)DIK ddPTM_HeLa_CUDC101_4h_R1 1 YDDPEVQKDIK 11 1 P38646;D6RJI2;A0A3B3ITI4 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 1 YDDPEVQK(1)DIK 91.701 0.020523 383410 155.3 253.83 231.45 223.3 387.59 211.97 148.99 264.38 170.34 263.57 FALSE TRUE FALSE 137.0959694 261.6502014 243.9628871 232.4071392 358.9982579 207.9270254 154.7365942 294.4759505 163.3185131 262.0022739 0.523262517 0.998656224 0.931147976 0.887042451 1.370210466 0.793607713 0.590592562 1.123944255 0.623347693 1 8.033435523 SAAQAAAQT(ph)NSNAAGK ddPTM_HeLa_CUDC101_4h_R1 1 SAAQAAAQTNSNAAGK 16 0 Q8NC51-2;Q8NC51;Q8NC51-4;Q8NC51-3 Q8NC51-2 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 0 SAAQAAAQT(0.984)NS(0.016)NAAGK 150.01 0.00088023 4156700 1286.4 1006.6 1156.1 1369.2 1328 1129.5 1470.6 1128 1036.8 1394.6 TRUE FALSE FALSE 1135.610142 1037.612153 1218.602263 1425.041894 1230.036086 1107.956669 1527.321535 1256.40696 994.0626652 1386.304857 0.819163358 0.748473287 0.879029065 1.027942654 0.887276763 0.799215745 1.10172126 0.906299184 0.71705921 1 10.43702883 SASFS(ph)QGTR ddPTM_HeLa_CUDC101_4h_R1 1 SASFSQGTR 9 0 Q9UQC2-2;Q9UQC2 Q9UQC2-2 GAB2 GRB2-associated-binding protein 2 1 0 S(0.309)AS(0.196)FS(0.495)QGTR 95.483 0.021977 19710000 1540.6 1164.5 688.14 999.33 822.25 1049.3 1025.4 1147.6 965.26 905.87 TRUE FALSE FALSE 1360.013203 1200.376865 725.3429299 1040.086997 761.5942557 1029.286351 1064.950021 1278.238145 925.4715742 900.481845 1.510317183 1.333038385 0.805505335 1.155033833 0.845763032 1.143039537 1.182644633 1.419504627 1.027751508 1 9.814553379 SATTTPSGS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SATTTPSGSPR 11 0 Q2M2I8-2;Q2M2I8;A0A096LP60;A0A096LNZ0;A0A096LP25 Q2M2I8-2;A0A096LNZ0 AAK1 AP2-associated protein kinase 1 1 0 SATTT(0.001)PS(0.035)GS(0.964)PR 134.38 0.0017148 2406300 821.87 698.12 1164.7 741.32 1109.9 864.17 963.87 756.3 911.56 775.44 TRUE FALSE FALSE 725.5316445 719.6282497 1227.667205 771.5542339 1028.024888 847.6873971 1001.046789 842.3941349 873.985111 770.8276484 0.941237183 0.933578669 1.592661093 1.000942604 1.333663745 1.09971068 1.298664871 1.092843694 1.133826884 1 9.59026451 SDS(ph)RAQAVSEDAGGNEGR ddPTM_HeLa_CUDC101_4h_R1 1 SDSRAQAVSEDAGGNEGR 18 1 P55884;P55884-2;C9JZG1 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 1 0 SDS(1)RAQAVSEDAGGNEGR 210.47 2.37E-23 11463000 904.13 779.59 1066.6 990.21 1927.4 1175.1 1048.2 1443.6 897.28 1423.3 TRUE FALSE FALSE 798.149252 803.6082439 1124.263622 1030.595044 1785.219542 1152.686925 1088.629425 1607.933589 860.2937386 1414.834148 0.564129197 0.567987594 0.794625733 0.728421098 1.261787146 0.814715228 0.769439603 1.136482033 0.60805271 1 10.46641723 YDDYSSSR ddPTM_HeLa_CUDC101_4h_R1 2 YDDYSSSR 8 0 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 0 ; ; 176.09 4.37E-05 158882000 7016.8 6112 7190.9 7087.6 7016.7 6307.2 6250.4 4916.8 6864.4 7385 FALSE FALSE TRUE 6194.301341 6300.303475 7579.661805 7376.662963 6499.09202 6186.900669 6491.480022 5476.508638 6581.446527 7341.073692 0.843786836 0.858226431 1.032500438 1.004847965 0.885305378 0.842778717 0.884268473 0.746009217 0.896523697 1 12.84177537 -3.143093089 0.732219373 0.930719066 5.62E-12 0.425393762 0.063833885 10.58382588 1.177293676 0.012859829 11.9113087 0.000719295 3.143093089 -0.930719066 YDEELEGERPHSFR ddPTM_HeLa_CUDC101_4h_R1 1 YDEELEGERPHSFR 14 1 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 0 0 71.888 0.024084 24737000 4822.1 4614.3 4818.1 4870 4766.3 5036.1 4349.2 3995 4545.5 4333.1 FALSE FALSE TRUE 4256.860748 4756.461114 5078.58106 5068.61965 4414.699545 4940.044783 4516.950101 4449.774652 4358.132566 4307.326528 0.988283735 1.10427224 1.179056435 1.176743768 1.024927995 1.146893497 1.048666747 1.033071122 1.01179526 1 12.07257698 -7.259313643 23.84769528 0.994467317 1.104507077 0.440824015 0.052436232 61.86794783 694067.9693 0.008851283 0.010555922 5.50E-08 7.259313643 0.11003976 YDEFHDYLER ddPTM_HeLa_CUDC101_4h_R1 2 YDEFHDYLER 10 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 0 0 ; ; 160.18 6.00E-05 19287900 15608.4 13806.5 13849.3 13278.8 15475.6 13769.6 13081.6 13173 15417.9 14342.3 FALSE FALSE TRUE 13778.80701 14231.8619 14598.03505 13820.36686 14333.99582 13506.96782 13586.16169 14672.56107 14782.36764 14256.99136 0.966459659 0.998237394 1.023921154 0.96937471 1.005401172 0.947392579 0.952947319 1.029148486 1.036850431 1 13.79938194 -5.289995814 24.97256349 0.988050199 0.974141221 0.015111427 0.030366458 1734.294321 1516635.247 0.003790701 0.008478117 5.13E-06 5.289995814 -0.013908978 SDSVLPASHGHLPQAGS(ph)LER ddPTM_HeLa_CUDC101_4h_R1 1 SDSVLPASHGHLPQAGSLER 20 0 Q8N4C8;Q8N4C8-4;Q8N4C8-2;Q8N4C8-3;Q8N4C8-5 Q8N4C8 MINK1 Misshapen-like kinase 1 1 0 SDSVLPASHGHLPQAGS(1)LER 81.329 0.0027377 5513500 3238.7 1562.5 1425.1 1675 4191.3 2480.4 2660.9 1922.6 3058.9 2307.9 TRUE FALSE FALSE 2859.064496 1610.638773 1502.145217 1743.31374 3882.116149 2433.090503 2763.531804 2141.461013 2932.810847 2294.172508 1.246229081 0.702056522 0.65476559 0.759887817 1.692164009 1.06055255 1.204587621 0.933435042 1.278374158 1 11.16375816 YDEMVESMK ddPTM_HeLa_CUDC101_4h_R1 1 YDEMVESMK 9 0 P62258;B4DJF2;I3L3T1 P62258 YWHAE 14-3-3 protein epsilon 0 0 116.37 0.039119 7289800 1261.1 961.35 1018.5 1245.3 1295.1 1235.6 1140.1 1073.6 1110.5 1159 FALSE FALSE TRUE 1113.27577 990.968054 1073.563191 1296.088717 1199.563053 1212.032989 1184.074039 1195.814284 1064.72472 1152.106216 0.966296123 0.860136019 0.931826576 1.124973286 1.041191373 1.052014972 1.027747288 1.037937533 0.924155 1 10.17005801 -6.276094961 24.98218229 0.968848955 1.054030392 0.580651957 0.047238964 601.4005653 1025157.778 0.007770606 0.011898391 5.30E-07 6.276094961 0.085181437 SEMT(ph)ASPLVGPER ddPTM_HeLa_CUDC101_4h_R1 1 SEMTASPLVGPER 13 0 B4DIB3;A0A087X0I6;Q9P0L2-2;Q9P0L2-3;Q9P0L2 B4DIB3 MARK1 Serine/threonine-protein kinase MARK1 1 0 S(0.072)EMT(0.765)AS(0.164)PLVGPER 192.65 2.19E-11 7613500 764.49 642.53 760.54 663.69 846.99 795.26 625.52 599.81 856.53 666.7 TRUE FALSE FALSE 674.8776411 662.3255877 801.6570929 690.7581469 784.5092351 780.0917405 649.6465159 668.0899459 821.2234709 662.7344387 1.018322878 0.999383085 1.209620394 1.042284973 1.183745991 1.177080434 0.980251633 1.008080925 1.239144102 1 9.37228708 YDFGIYDDDPEIITLER ddPTM_HeLa_CUDC101_4h_R1 1 YDFGIYDDDPEIITLER 17 0 Q71S60;A0A087WXH7;E7EP04;A0A494C1G5;Q8IXB1-3;Q8IXB1-2;Q8IXB1 Q71S60 DNAJC10 DnaJ homolog subfamily C member 10 0 0 146.59 0.00084269 9273500 1499.9 1385.9 1587.8 1238.7 1782.9 1638.3 1459.4 1423.9 1475.5 1482.9 FALSE FALSE TRUE 1324.083996 1428.597936 1673.641271 1289.21954 1651.379019 1607.052157 1515.689547 1585.99102 1414.679265 1474.079645 0.898244542 0.969145691 1.135380491 0.874592865 1.120278015 1.090207142 1.028227716 1.07591949 0.959703413 1 10.52559876 -6.973059233 24.00690969 0.950988086 1.049652109 0.308896022 0.071440052 132.7620622 118303.5758 0.0117105 0.015390343 1.06E-07 6.973059233 0.098664024 SEPRPPIS(ph)SPR ddPTM_HeLa_CUDC101_4h_R1 1 SEPRPPISSPR 11 1 Q6WKZ4;E7EX40;Q6WKZ4-2;Q6WKZ4-3 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 0 S(0.002)EPRPPIS(0.751)S(0.247)PR 70.628 0.033156 15494000 3169.6 2680.3 2391.3 2720.3 2614.7 2730.8 2224.2 2542.9 2517.2 2476 TRUE FALSE FALSE 2798.064293 2762.876866 2520.580911 2831.245592 2421.81879 2678.71454 2309.988139 2832.373457 2413.439951 2461.272642 1.136836385 1.122539949 1.024096587 1.150317744 0.983970142 1.088345311 0.938534033 1.150775988 0.98056587 1 11.26518876 YDIDLPNK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 YDIDLPNKK 9 1 E5RGN3;E5RIM7;O00244 E5RGN3 ATOX1 Copper transport protein ATOX1 0 1 YDIDLPNK(1)K 111.61 0.00374 1804200 3816.3 1621.6 1395.6 1217.4 3422.5 2662.3 3221.6 2678.1 2790.7 2591.5 FALSE TRUE FALSE 3368.959099 1671.559574 1471.050357 1267.050834 3170.028994 2611.521063 3345.858191 2982.964079 2675.666165 2576.085643 1.307782258 0.648875777 0.571040936 0.491851208 1.230560406 1.013755529 1.298814813 1.157944452 1.03865575 1 11.33096484 -7.278979564 24.84227451 1.145341612 0.917098141 0.098091123 0.272533059 1296.782145 1836636.622 0.052224582 0.059795172 5.26E-08 7.278979564 -0.228243472 YDIEDGEAIDSR ddPTM_HeLa_CUDC101_4h_R1 2 YDIEDGEAIDSR 12 0 Q13576;E7EWC2;F5H7S7;Q13576-3;Q13576-2 Q13576 IQGAP2 Ras GTPase-activating-like protein IQGAP2 0 0 ; ; 119.34 0.00068406 4180200 2188.1 2278.4 2159.4 1881.03 2524.4 2067.24 2353.6 2293.2 2214.9 2573.9 FALSE FALSE TRUE 1931.614235 2348.594803 2276.143696 1957.746534 2338.180041 2027.810841 2444.37914 2554.248619 2123.600885 2558.590328 0.754952527 0.917925303 0.889608497 0.765166081 0.913854796 0.79255003 0.955361674 0.998303085 0.829988631 1 11.32113345 -4.562181376 10.25511108 0.873429491 0.987643322 0.283993318 0.073618291 0.505959624 129.0943977 0.013381378 0.050344723 2.74E-05 4.562181376 0.114213831 SES(ph)PKEPEQLRK ddPTM_HeLa_CUDC101_4h_R1 2 SESPKEPEQLRK 12 2 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 0 S(0.155)ES(0.845)PKEPEQLRK;S(0.023)ES(0.977)PKEPEQLRK ; 76.156 0.025693 4468800000 11200 11455.6 11239.3 11090.5 12072.4 10549.6 10843.7 12055.8 12268 11895.1 TRUE FALSE FALSE 9887.152978 11808.53346 11846.93056 11542.81853 11181.8431 10348.38396 11261.94514 13428.18354 11762.30785 11824.34742 0.836169019 0.998662594 1.001909885 0.976190746 0.945662599 0.875175905 0.952436929 1.135638447 0.994753235 1 13.52947294 SESAPTLHPYSPLS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 5 SESAPTLHPYSPLSPK 16 0 Q8WUF5;K7EN03 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 SESAPTLHPYS(0.001)PLS(0.999)PK;SESAPTLHPYS(0.003)PLS(0.997)PK;SESAPTLHPYS(0.001)PLS(0.999)PK;SESAPTLHPY(0.003)S(0.009)PLS(0.988)PK;SESAPTLHPY(0.001)S(0.056)PLS(0.942)PK ;;;; 169.94 7.59E-07 309927000 22030.7 15906 14362.2 13880.9 23776.6 19672.5 19515.6 19131.3 20516.6 20474.8 TRUE FALSE FALSE 19448.29474 16396.04501 15138.66398 14447.0231 22022.64759 19297.27984 20268.32323 21309.12986 19670.89706 20353.01498 0.955548589 0.805583105 0.743804492 0.70982226 1.082033675 0.948128808 0.99583886 1.046976572 0.966485658 1 14.3129549 SESQESLVTSPS(ph)KPK ddPTM_HeLa_CUDC101_4h_R1 1 SESQESLVTSPSKPK 15 1 E7EWD6;Q76L83;A0A5F9ZHN2;Q76L83-2 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 0 SESQESLVT(0.167)S(0.167)PS(0.666)KPK 63.998 0.031078 33001000 2152.1 1864.1 1988.6 2195.3 1955.9 2020 2168.7 1855.9 2618.5 2213.7 TRUE FALSE FALSE 1899.8341 1921.530711 2096.109731 2284.833823 1811.617154 1981.471866 2252.347485 2067.168154 2510.564322 2200.532814 0.863351861 0.873211569 0.952546455 1.038309362 0.823262958 0.900450951 1.023546421 0.939394378 1.140889291 1 11.10363717 SEVQQPVHPKPLS(ph)PDSR ddPTM_HeLa_CUDC101_4h_R1 2 SEVQQPVHPKPLSPDSR 17 1 Q9UHB6-4;Q9UHB6-5;Q9UHB6;F8VQE1;Q9UHB6-2;F8VS07;Q9UHB6-3;F8VRN8 Q9UHB6-4 LIMA1 LIM domain and actin-binding protein 1 1 0 SEVQQPVHPKPLS(0.839)PDS(0.161)R;SEVQQPVHPKPLS(0.745)PDS(0.255)R ; 117.23 0.00023427 2041950000 6081.7 5446.2 4588.9 4893.4 5566.1 5500.7 5046.8 5183.3 5466.3 5139.8 TRUE FALSE FALSE 5368.812345 5613.990967 4836.989815 5092.974003 5155.499892 5395.783312 5241.456767 5773.34592 5240.9768 5109.228241 1.050806911 1.098794319 0.946716331 0.996818651 1.009056485 1.056085784 1.025880332 1.129983952 1.025786391 1 12.31888967 SFEVEEVETPNS(ph)TPPR ddPTM_HeLa_CUDC101_4h_R1 1 SFEVEEVETPNSTPPR 16 0 Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8;K7ENL0;K7EJV0;K7EPY1 Q9UHD8-7 9-Sep Septin-9 1 0 SFEVEEVET(0.026)PNS(0.487)T(0.487)PPR 80.632 0.0096493 4788400 1122 1122.3 1133.4 1133.3 1453.1 1183.4 1033 665.85 1457.4 1325.4 TRUE FALSE FALSE 990.4808608 1156.876733 1194.675032 1179.520873 1345.907708 1160.828617 1072.843156 741.6476725 1397.325355 1317.516462 0.751778736 0.878073835 0.906762888 0.895260823 1.021549064 0.88107333 0.814292031 0.562913401 1.060575253 1 10.36360527 SFLSEPSS(ph)PGR ddPTM_HeLa_CUDC101_4h_R1 2 SFLSEPSSPGR 11 0 Q69YN4-3;Q69YN4;H0YC41 Q69YN4-3 KIAA1429 Protein virilizer homolog 1 0 SFLSEPS(0.001)S(0.999)PGR;SFLSEPS(0.002)S(0.998)PGR ; 178.53 1.91E-07 489410000 14650.2 11148.2 10291 10816 13020.6 12401.6 10865.5 11095.4 11844.9 11609.9 TRUE FALSE FALSE 12932.92576 11491.66283 10847.36259 11257.12323 12060.09628 12165.06014 11284.58597 12358.45549 11356.64821 11540.8438 1.1206222 0.995738529 0.939910701 0.97541596 1.044992592 1.054087583 0.977795573 1.070845053 0.984039677 1 13.49446109 YEAQGDK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 2 YEAQGDKAK 9 1 O75351;K7EKZ3;K7EL71 O75351 VPS4B Vacuolar protein sorting-associated protein 4B 0 1 ; YEAQGDK(1)AK;YEAQGDK(1)AK 150.61 0.0015724 6885500 2636.42 2436.12 3175.64 3596.38 3392.45 2987.84 2720.66 2825.01 1968.15 2194.82 FALSE TRUE FALSE 2327.382844 2511.17397 3347.324704 3743.055921 3142.195722 2930.85193 2825.596768 3146.597719 1887.022024 2181.765113 1.066743084 1.150982732 1.534227807 1.715609026 1.44020807 1.343339809 1.295096686 1.442225701 0.864906132 1 11.09128008 -6.901028008 4.026689112 1.034339632 1.458652166 0.766764222 0.120557696 0.084288127 2.568100582 0.019755461 0.026254868 1.26E-07 6.901028008 0.424312535 SFSEDAVTDS(ph)SGSGTLPR ddPTM_HeLa_CUDC101_4h_R1 1 SFSEDAVTDSSGSGTLPR 18 0 Q27J81-2;Q27J81;A0A0A0MQU1 Q27J81-2 INF2 Inverted formin-2 1 0 SFSEDAVT(0.178)DS(0.645)S(0.073)GS(0.058)GT(0.046)LPR 128.1 7.03E-05 10832000 2228.4 1128.8 1344.2 1715.8 1711.4 1878.7 1848.1 985.89 1577.6 1728.1 TRUE FALSE FALSE 1967.19033 1163.57699 1416.871518 1785.77774 1585.153432 1842.866928 1919.381836 1098.119732 1512.57066 1717.821184 1.145165951 0.677356293 0.824807338 1.039559738 0.922769754 1.072793225 1.11733506 0.639251479 0.880516944 1 10.74636415 YEAWLAEAESR ddPTM_HeLa_CUDC101_4h_R1 1 YEAWLAEAESR 11 0 Q15642;M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3 Q15642 TRIP10 Cdc42-interacting protein 4 0 0 118.4 0.025405 3824300 1421.7 1271.8 1190.6 1349.4 1461.6 1175.8 1279 1169.3 1174.6 1468 FALSE FALSE TRUE 1255.050481 1310.982651 1254.967437 1404.434365 1353.78068 1153.373574 1328.331458 1302.408386 1126.182491 1459.268271 0.860054663 0.898383578 0.859997755 0.962423697 0.927711996 0.790378025 0.910272282 0.892507849 0.771744657 1 10.51102942 -9.354642846 0.966566969 1.00320415 0.886517981 0 0.082986137 0.404601196 0.646634473 0.0340959 0.007970801 4.42E-10 9.354642846 -0.116686169 SGGS(ph)GGCSGAGGASNCGTGSGR ddPTM_HeLa_CUDC101_4h_R1 1 SGGSGGCSGAGGASNCGTGSGR 22 0 E9PL01;A0A087WUC6;E9PI68;Q15005 E9PL01 SPCS2 Signal peptidase complex subunit 2 1 0 S(0.025)GGS(0.966)GGCS(0.009)GAGGASNCGTGSGR 108.37 2.28E-05 0 59.936 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 52.91039294 0 0 0 0 0 0 0 0 0 0 YEDFSNLGTTHLLR ddPTM_HeLa_CUDC101_4h_R1 1 YEDFSNLGTTHLLR 14 0 H3BSJ9;H3BRG4;P22695;A0A087WVZ4;H3BUE4;H3BUI9;H3BP04 H3BSJ9 UQCRC2 "Cytochrome b-c1 complex subunit 2, mitochondrial" 0 0 91.076 0.012624 5940000 2961.1 1726.9 1241.1 1661.2 2137.5 1904 1869.5 1529.8 1377.8 1706.5 FALSE FALSE TRUE 2614.004347 1780.103742 1308.19762 1728.950916 1979.820884 1867.684372 1941.607241 1703.946248 1321.006501 1696.349662 1.54095845 1.049373123 0.771183942 1.019218475 1.167106598 1.101002001 1.144579614 1.004478196 0.778734792 1 10.72821786 -7.048307394 24.9949608 1.257542804 1.036465192 0 0.219208919 501.1152913 259283.5129 0.037243976 0.045614878 8.95E-08 7.048307394 -0.221077612 YEDHTIFHDISLR ddPTM_HeLa_CUDC101_4h_R1 1 YEDHTIFHDISLR 13 0 P82675 P82675 MRPS5 "28S ribosomal protein S5, mitochondrial" 0 0 107.53 0.0040205 6612000 2812.6 2379.7 1929.9 1626 2113.1 2355.7 1961.6 1478.1 2200.9 1674.6 FALSE FALSE TRUE 2482.911292 2453.015736 2034.236232 1692.315308 1957.220823 2310.768947 2037.259569 1646.360929 2110.17797 1664.639405 1.491561046 1.473601868 1.222028162 1.016625765 1.175762641 1.388149854 1.223844373 0.989019559 1.267648696 1 10.70099398 -6.517978139 24.9004821 1.261060335 1.170330865 0.127998651 0.165329291 659.9238591 3353140.09 0.035406092 0.050881605 3.03E-07 6.517978139 -0.09072947 SGS(ph)ESEEAELSLSLAR ddPTM_HeLa_CUDC101_4h_R1 2 SGSESEEAELSLSLAR 16 0 Q8IV50 Q8IV50 LYSMD2 LysM and putative peptidoglycan-binding domain-containing protein 2 1 0 S(0.046)GS(0.952)ES(0.002)EEAELSLSLAR;S(0.001)GS(0.499)ES(0.499)EEAELSLSLAR ; 233.84 3.30E-43 15921500 4061.4 3193.7 2939.2 3352.9 3655.9 3271.8 3083.3 3109.3 3924 3313.2 TRUE FALSE FALSE 3585.328849 3292.094112 3098.102043 3489.645754 3386.211541 3209.395866 3202.223914 3463.250144 3762.251059 3293.492939 1.088609848 0.999575275 0.940673656 1.059557685 1.028152057 0.974465689 0.972288076 1.051543212 1.142328564 1 11.68540274 YEDRYDR ddPTM_HeLa_CUDC101_4h_R1 1 YEDRYDR 7 1 E7EX17;P23588-2;P23588;F8VP89;F8VX11 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 0 102.72 0.023336 27946000 3921 1982.6 3513.1 3637.9 3134.8 2775.3 2805.1 1716.7 3447.2 4132.6 FALSE FALSE TRUE 3461.386324 2043.681556 3703.028813 3786.269286 2903.552049 2722.365776 2913.293647 1912.122189 3305.104957 4108.019111 0.842592556 0.497485893 0.901414699 0.921677622 0.706801008 0.662695499 0.709172369 0.46546088 0.804549557 1 12.00422718 -4.254438831 0.093774713 1.247108257 1.07E-15 0.282858646 0.142288512 38.20414778 0.582868074 1.943490749 7.05684723 5.57E-05 4.254438831 -1.247108257 SGTSSPQS(ph)PVFR ddPTM_HeLa_CUDC101_4h_R1 3 SGTSSPQSPVFR 12 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 SGTS(0.001)SPQS(0.999)PVFR;SGTSS(0.014)PQS(0.986)PVFR;SGT(0.001)S(0.024)S(0.017)PQS(0.959)PVFR ;; 155.14 0.00024019 1406368000 7628.6 6138 6319.1 5681.4 7201.4 6769 6373.8 6912.2 6457.2 6084.9 TRUE FALSE FALSE 6734.387072 6327.104505 6660.72966 5913.112049 6670.167069 6639.892603 6619.639601 7699.056908 6191.031483 6048.706744 1.113359823 1.046025997 1.101182441 0.977582862 1.102742677 1.097737563 1.094389244 1.272843474 1.02352978 1 12.562411 YEEEEEQSR ddPTM_HeLa_CUDC101_4h_R1 3 YEEEEEQSR 9 0 Q9Y5B9 Q9Y5B9 SUPT16H FACT complex subunit SPT16 0 0 ;; ;; 174.02 1.15E-06 42496900 4632.1 3455.66 4221.62 3849.64 4230.54 3784.64 3491.84 3161.19 4092.09 3937.2 FALSE FALSE TRUE 4089.13226 3562.124789 4449.853547 4006.644959 3918.461493 3712.454298 3626.521438 3521.047092 3923.412318 3913.781359 1.044803448 0.910149153 1.136970397 1.023727334 1.001195809 0.948559451 0.926602972 0.899653498 1.002460781 1 11.93434745 -5.131411134 1.833014467 1.02204257 0.910115924 0.40906968 0.052359682 0.259093307 1.642663989 0.007351659 0.027546352 7.39E-06 5.131411134 -0.111926646 YEEIDNAPEER ddPTM_HeLa_CUDC101_4h_R1 1 YEEIDNAPEER 11 0 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 0 143.5 0.0067532 34641000 1401.7 1505.9 1145.4 1136.5 1557.9 1269 1035.7 934.42 1259.8 1438 FALSE FALSE TRUE 1237.394851 1552.294994 1207.323789 1182.851382 1442.976821 1244.795939 1075.647296 1040.790596 1207.870511 1429.446712 0.865646016 1.085941141 0.844609161 0.827488966 1.009465277 0.870823605 0.752492056 0.728107307 0.844991632 1 10.48124112 -3.050316699 0.502268489 0.944431404 3.30E-13 0.391832418 0.084835824 8.467286326 0.580863761 0.016745406 6.220002123 0.000890601 3.050316699 -0.944431404 YEEVSVSGFEEFHR ddPTM_HeLa_CUDC101_4h_R1 2 YEEVSVSGFEEFHR 14 0 I3L0K2;I3L3M7;I3L2R6;Q9BRA2 I3L0K2 TXNDC17 Thioredoxin domain-containing protein 17 0 0 ; ; 139.77 0.00049315 35436000 6031.8 6172.6 13662.6 5458.2 7303.6 6049.3 6463.7 14366 21066.2 9653 FALSE FALSE TRUE 5324.761548 6362.77049 14401.24148 5680.808988 6764.827979 5933.919681 6713.007074 16001.36737 20197.84232 9595.583527 0.554917951 0.663093648 1.500819772 0.592023296 0.704993913 0.618401128 0.699593418 1.667576268 2.104910271 1 13.22815483 YEFTDALLCHDDELEGR ddPTM_HeLa_CUDC101_4h_R1 1 YEFTDALLCHDDELEGR 17 0 H3BR79;H3BUA6;A0A0A0MTR2;Q8N543-2;Q8N543 H3BR79 OGFOD1 Prolyl 3-hydroxylase OGFOD1 0 0 143.14 0.00016949 3059700 1522.1 1375.6 1524.5 1443.3 1498.7 1181.8 1038.6 1124.4 1741 447.9 FALSE FALSE TRUE 1343.681745 1417.980606 1606.919081 1502.164012 1388.143887 1159.259134 1078.65915 1252.397151 1669.235243 445.2358709 3.017909906 3.184785185 3.609141101 3.373861162 3.117771899 2.603696624 2.422669018 2.812884659 3.749103233 1 8.798426019 -9.059462019 0.781631552 0.959931042 3.026863601 0 0.904391346 0.234129194 0.253816921 0.289255577 0.08125003 8.72E-10 9.059462019 2.066932559 SGYHDDS(ph)DEDLLE ddPTM_HeLa_CUDC101_4h_R1 1 SGYHDDSDEDLLE 13 0 Q99523-2;Q99523 Q99523-2 SORT1 Sortilin 1 0 SGYHDDS(1)DEDLLE 85.554 0.023628 10519000 2870.3 1270.4 1062.6 1380.5 2092.9 1820.3 1361.3 974.8 1549.1 1368.9 TRUE FALSE FALSE 2533.847785 1309.539518 1120.04737 1436.802757 1938.510937 1785.58081 1413.805797 1085.767292 1485.245442 1360.757722 1.862085913 0.962360527 0.823105651 1.055884331 1.424581985 1.312195978 1.038984218 0.797913746 1.091484118 1 10.41019451 SHS(ph)GTSPDNTAPPPPPPRPQPS(ph)HSR ddPTM_HeLa_CUDC101_4h_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 2 0 S(0.046)HS(0.26)GT(0.235)S(0.245)PDNT(0.214)APPPPPPRPQPS(0.531)HS(0.469)R 53.342 0.012895 10100000 925.62 826.95 1336.8 960 1166.9 1184.7 1029.7 814.07 1144.7 939.01 TRUE FALSE FALSE 817.1202267 852.4273493 1409.071452 999.1529495 1080.820112 1162.103821 1069.415874 906.7404382 1097.514981 933.4247268 0.875400237 0.913225593 1.509571593 1.070416201 1.157908164 1.244989326 1.145690534 0.97141249 1.175793773 1 9.866389875 SHS(ph)LSQHTATSSK ddPTM_HeLa_CUDC101_4h_R1 1 SHSLSQHTATSSK 13 0 P49790-3;P49790;P49790-2 P49790-3 NUP153 Nuclear pore complex protein Nup153 1 0 S(0.308)HS(0.686)LS(0.007)QHTATSSK 107.63 0.0033894 1336700 2492.3 630.91 1054.7 1000.9 3243.9 2285.3 2170.8 1599 1736.4 2049.1 TRUE FALSE FALSE 2200.156372 650.3475893 1111.720272 1041.721028 3004.60396 2241.71171 2254.528483 1781.023697 1664.824857 2036.911862 1.080143139 0.319281164 0.545787127 0.51142175 1.475078041 1.100544286 1.106836543 0.874374454 0.817327882 1 10.99216784 SHSPS(ph)ASQSGSQLR ddPTM_HeLa_CUDC101_4h_R1 1 SHSPSASQSGSQLR 14 0 E9PMS6;Q8WWI1-3;Q8WWI1;Q8WWI1-4;Q8WWI1-2;J3KP06;F8WD26;Q8WWI1-5;E9PMT2;A0A0A0MTE2 E9PMS6 LMO7 LIM domain only protein 7 1 0 S(0.192)HS(0.144)PS(0.429)AS(0.192)QS(0.022)GS(0.022)QLR 75.02 0.036169 10978000 1311.1 503.58 594.97 479.86 1328.1 1009.7 1024 744.97 885.5 871.8 TRUE FALSE FALSE 1157.414845 519.0947029 627.1358779 499.4307649 1230.128709 990.4416548 1063.496023 829.7743735 848.9993152 866.6144948 1.335559066 0.598991485 0.723661884 0.57630096 1.419464729 1.142886094 1.22718467 0.957489609 0.979673569 1 9.759246557 YEQGTGCWQGPNR ddPTM_HeLa_CUDC101_4h_R1 1 YEQGTGCWQGPNR 13 0 K7ELL7;P14314-2;P14314;A0A0C4DGP4 K7ELL7 PRKCSH Glucosidase 2 subunit beta 0 0 168.83 5.44E-11 0 570.37 346.76 385.72 492.67 455.44 513.61 419.12 515.6 445.01 249.95 FALSE FALSE TRUE 503.5120932 357.4432646 406.5731899 512.7632121 421.8430986 503.813745 435.2855988 574.2938199 426.6664994 248.4632863 2.026505005 1.438616022 1.636351173 2.063738349 1.697808577 2.027719075 1.751911139 2.311383015 1.717221509 1 7.95688888 -10.57391468 0.388779932 2.85E-10 1.915471908 0.127337896 0.329007525 2.864295003 0.265484349 2.646829517 0.073158745 2.67E-11 10.57391468 1.915471907 SHTPS(ph)PTSPK ddPTM_HeLa_CUDC101_4h_R1 3 SHTPSPTSPK 10 0 B7Z385;A0A087X0J3;A0A087WZ15;E9PDI2;P40123-2;P40123 B7Z385 CAP2 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 2 1 0 SHT(0.023)PS(0.971)PT(0.005)S(0.001)PK;SHTPS(0.981)PT(0.015)S(0.004)PK;SHTPS(0.936)PT(0.06)S(0.003)PK ;; 136.96 0.0015727 68435000 15786.9 13501.2 15545.4 15605.6 15972.3 15496.3 15178.9 14565.7 16749.7 16861 TRUE FALSE FALSE 13936.38351 13917.15597 16385.83135 16242.06382 14794.05525 15200.7339 15764.35526 16223.80041 16059.27028 16760.71002 0.831491237 0.830344058 0.977633485 0.969055834 0.882662801 0.906926608 0.940554143 0.967966177 0.958149759 1 14.03279565 SKDEEEDEES(ph)DDADDTPILKPVSLLR ddPTM_HeLa_CUDC101_4h_R1 2 SKDEEEDEESDDADDTPILKPVSLLR 26 2 A0A3B3IS53;A0A3F2YNX6;Q92794;A0A3B3ITI3 A0A3B3IS53 KAT6A Histone acetyltransferase KAT6A 1 0 SKDEEEDEES(0.998)DDADDT(0.001)PILKPVSLLR;S(0.001)KDEEEDEES(0.999)DDADDTPILKPVSLLR ; 94.389 4.79E-06 29995000 1054.35 780.96 883.61 1078.46 1020.53 950.3 1058.55 922.67 823.66 1023.74 TRUE FALSE FALSE 930.7606913 805.0204519 931.3806294 1122.44426 945.2475351 932.1746108 1099.378628 1027.703023 789.7083862 1017.650749 0.914617016 0.791057691 0.915226201 1.102975909 0.928852591 0.916006412 1.080310341 1.009877922 0.776011207 1 9.991026808 YESLTDPSK ddPTM_HeLa_CUDC101_4h_R1 2 YESLTDPSK 9 0 P07900;P07900-2;G3V2J8;Q58FF6;P08238;Q58FF7;Q58FF8 P07900;P08238;Q58FF8 HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 0 0 ; ; 138.06 0.011762 24916000 9166 7056.3 7866.3 7782.7 7836.8 7936.7 7249.7 7273.4 8279.4 8568.2 FALSE FALSE TRUE 8091.575375 7273.696239 8291.575972 8100.112146 7258.694877 7785.320671 7529.323357 8101.374456 7938.119628 8517.235965 0.950023624 0.853997267 0.97350549 0.951025917 0.852235973 0.914066571 0.884010187 0.951174124 0.932006541 1 13.0561696 -8.120604225 0.570748882 0.999648412 0.907674833 0.108076766 0.044434463 0.517374997 0.383672485 0.020151582 0.01157435 7.58E-09 8.120604225 -0.091973579 YESLTDPSK(ac)LDSGK ddPTM_HeLa_CUDC101_4h_R1 1 YESLTDPSKLDSGK 14 1 P07900;P07900-2;G3V2J8;P08238;Q58FF7;Q58FF8 P07900;P08238;Q58FF8 HSP90AA1;HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 0 1 YESLTDPSK(1)LDSGK 210.93 9.14E-20 888050 736.19 362.02 246.15 236.26 796.41 497.61 657.03 693.1 747.92 445.22 FALSE TRUE FALSE 649.8949242 373.1734071 259.4576136 245.895704 737.660421 488.1189183 682.3718672 771.9997024 717.090421 442.5718116 1.468450785 0.843192895 0.586249749 0.555606339 1.666758708 1.102914613 1.541833097 1.744349012 1.620280375 1 8.789767755 -4.527426292 1.279670647 1.119854579 1.879357793 0.259226396 0.369865006 1.048521218 2.025528172 0.056361973 0.913566382 2.97E-05 4.527426292 0.759503215 YESLTDPSKLDSGK ddPTM_HeLa_CUDC101_4h_R1 2 YESLTDPSKLDSGK 14 1 P07900;P07900-2;G3V2J8;P08238;Q58FF7;Q58FF8 P07900;P08238;Q58FF8 HSP90AA1;HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 0 0 ; ; 103.13 0.0074983 113002000 9254.7 8977.5 8878.3 8711.7 10937.4 9647.4 9730.3 10332.8 10525.5 8508.7 FALSE FALSE TRUE 8169.878095 9254.086134 9358.287753 9067.000781 10130.56979 9463.391919 10105.60093 11509.04419 10091.63443 8458.089874 0.96592472 1.094110641 1.106430399 1.071991539 1.197737308 1.118856865 1.194785239 1.360714341 1.19313398 1 13.04611617 -1.000000112 0.255999372 0.969677884 3.367953048 0.415157193 0.08206469 13.40591868 0.168250903 0.026277002 14.12599938 0.099999974 1.000000112 2.398275164 SKDHFGLEGDEESTMLEDSVS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 3 SKDHFGLEGDEESTMLEDSVSPK 23 1 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 SKDHFGLEGDEESTMLEDS(0.117)VS(0.882)PK;SKDHFGLEGDEESTMLEDS(0.232)VS(0.768)PK;SKDHFGLEGDEES(0.002)T(0.001)MLEDS(0.266)VS(0.731)PK ;; 90.388 0.00013571 150934000 11236.9 6621.9 6747.3 5804.3 12284.8 9913.2 8620.6 7796 11039.2 9545.1 TRUE FALSE FALSE 9919.727616 6825.91289 7112.079447 6041.024442 11378.57478 9724.122227 8953.09943 8683.465127 10584.1595 9488.325321 1.045466643 0.719401228 0.749561088 0.636679734 1.199218449 1.024851267 0.943591111 0.91517363 1.115492897 1 13.21193776 SKETSSPGTDDVFTPAPS(ph)DSPSSQR ddPTM_HeLa_CUDC101_4h_R1 1 SKETSSPGTDDVFTPAPSDSPSSQR 25 1 P19634 P19634 SLC9A1 Sodium/hydrogen exchanger 1 1 0 SKETSSPGTDDVFT(0.001)PAPS(0.908)DS(0.074)PS(0.016)S(0.001)QR 141.5 6.87E-11 8410800 1922.7 1648.7 1549 1416.4 1336.3 1586 1210 1068.1 1276.7 1766.7 TRUE FALSE FALSE 1697.324021 1699.494493 1632.743625 1474.166914 1237.723811 1555.749692 1256.670105 1189.688187 1224.073886 1756.19159 0.966479985 0.967715882 0.929707006 0.839411214 0.704777211 0.885865586 0.715565496 0.677425056 0.697004753 1 10.77823453 SKGHYEVTGS(ph)DDETGK ddPTM_HeLa_CUDC101_4h_R1 2 SKGHYEVTGSDDETGK 16 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 SKGHYEVT(0.002)GS(0.921)DDET(0.076)GK;SKGHYEVT(0.005)GS(0.957)DDET(0.038)GK ; 72.772 0.012865 115119000 20622 11751.9 11175.2 11044.7 19720.6 17127.4 16612.3 14778.2 17390.9 15672.4 TRUE FALSE FALSE 18204.72042 12113.96211 11779.36512 11495.15061 18265.85063 16800.72338 17253.04198 16460.49055 16674.03974 15579.17987 1.168528804 0.777573801 0.756096612 0.737853385 1.172452644 1.078408718 1.107442248 1.056569774 1.070277119 1 13.92733167 YETLVGTIGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 YETLVGTIGKK 11 1 H3BSB3;H3BNT4;Q99547 H3BSB3 MPHOSPH6 M-phase phosphoprotein 6 0 1 YETLVGTIGK(1)K 125.74 0.001457 503150 429.12 343.38 459.28 421.7 564.91 579.59 659.97 496.57 265.84 565.01 FALSE TRUE FALSE 378.8192041 353.9591308 484.110066 438.8987487 523.2377148 568.5352864 685.425264 553.0975216 254.8819627 561.6492954 0.674476417 0.630213789 0.86194369 0.781446273 0.931609314 1.012260304 1.22037946 0.984773819 0.453809815 1 9.133525755 -5.326303576 2.165902952 0.822329136 1.101733728 0.419530961 0.161888974 0.254303995 2.300390492 0.02195548 0.06290201 4.72E-06 5.326303576 0.279404592 SLDGAAAVDSADRS(ph)PRPTSAPAITQGQVAEGGVLDASAKK ddPTM_HeLa_CUDC101_4h_R1 1 SLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAKK 40 3 P11171;A0A2R8Y5G2;P11171-7;P11171-2;A0A2R8Y5Z6;A0A2R8Y570;A0A2R8YCW8;A0A3B3IU06;A0A2R8Y6G5;A0A2R8YFR9;A0A2R8YD30;Q4VB86;A0A2U3TZH6;A0A2R8Y420;P11171-3;P11171-5;P11171-4;A0A3B3ITP0;A0A2R8Y7N0;A0A2R8Y7Y3;A0A3B3IUD6;A0A2R8Y4N6;P11171-6 P11171 EPB41 Protein 4.1 1 0 S(0.002)LDGAAAVDS(0.115)ADRS(0.374)PRPT(0.374)S(0.104)APAIT(0.031)QGQVAEGGVLDASAKK 58.001 0.00013891 15207000 502.65 380.23 785.07 458.64 548.36 526.83 436.13 619.86 690.36 436.7 TRUE FALSE FALSE 443.730129 391.9444356 827.5132589 477.3453216 507.9085753 516.7815955 452.9516802 690.4223568 661.9030686 434.102489 1.022178265 0.902884562 1.906262415 1.099614339 1.170019957 1.190459877 1.043421062 1.590459337 1.524762206 1 8.761891884 YEWDVAEAR ddPTM_HeLa_CUDC101_4h_R1 3 YEWDVAEAR 9 0 P13639 P13639 EEF2 Elongation factor 2 0 0 ;; ;; 185.72 3.35E-10 476017000 15909.8 14799.6 11537.6 13211.1 12590.1 12400.5 12627.5 12309.2 13401.5 13467.4 FALSE FALSE TRUE 14044.87736 15255.55813 12161.35756 13749.90576 11661.35341 12163.98112 13114.5469 13710.42957 12849.0845 13387.29531 1.049119859 1.139554913 0.908425285 1.027086162 0.871076131 0.90862126 0.979626325 1.024137382 0.959796897 1 13.7085769 -6.724490946 24.9999997 1.032570715 0.951969442 0.296030894 0.063254219 162.1220697 109694.4268 0.009436096 0.013344455 1.89E-07 6.724490946 -0.080601273 SLGLSLS(ph)GGDQEDAGR ddPTM_HeLa_CUDC101_4h_R1 2 SLGLSLSGGDQEDAGR 16 0 H0YE82;H7C1L7;H0YEB7;C9JEV6;H7C3G9;Q9UJ70;Q9UJ70-2 H0YE82 NAGK N-acetyl-D-glucosamine kinase 1 0 SLGLSLS(1)GGDQEDAGR;SLGLSLS(1)GGDQEDAGR ; 237.06 2.18E-43 67421000 2880.9 2814.7 2682.8 2771.2 3227.9 2463.1 2780.3 2894.1 3189.5 2964.5 TRUE FALSE FALSE 2543.205269 2901.417571 2827.840283 2884.221514 2989.784248 2416.120471 2887.537102 3223.552646 3058.02746 2946.867022 0.863020031 0.984577027 0.959609057 0.978741658 1.014563679 0.819894638 0.979866781 1.093891452 1.037721566 1 11.52496624 SLHPWYGITPTSS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 SLHPWYGITPTSSPK 15 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 SLHPWYGITPTS(0.226)S(0.774)PK 170.26 7.44E-07 15220000 2996.8 1710 1556.6 1711 3186 2851.5 2756.4 2229.6 3238.6 2877.4 TRUE FALSE FALSE 2645.519647 1762.683073 1640.754504 1780.781976 2950.975127 2797.112388 2862.715271 2483.408652 3105.103537 2860.285097 0.92491467 0.616261321 0.573633204 0.622588978 1.03170664 0.977913842 1.000849627 0.868238154 1.085592321 1 11.48194324 YFDEHYEYR ddPTM_HeLa_CUDC101_4h_R1 2 YFDEHYEYR 9 0 P33552 P33552 CKS2 Cyclin-dependent kinases regulatory subunit 2 0 0 ; ; 161.27 5.61E-05 136276000 17293.7 14900.6 15736.9 14833.2 13782 12992.3 10662.4 11152.6 13261 16174.6 FALSE FALSE TRUE 15266.5587 15359.66982 16587.68442 15438.16201 12765.32932 12744.49352 11073.65234 12422.1669 12714.37597 16078.39276 0.94950776 0.955298832 1.031675533 0.960180675 0.79394312 0.792647232 0.688728812 0.772600041 0.790774063 1 13.97283558 -5.702987682 2.906586694 0.978618222 0.749125776 0.631088726 0.06791666 0.055455956 0.951465373 0.005239931 0.011030539 1.98E-06 5.702987682 -0.229492447 SLLGDSAPTLHLNKGT(ph)PSQSPVVGR ddPTM_HeLa_CUDC101_4h_R1 2 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 1 0 SLLGDSAPT(0.002)LHLNKGT(0.8)PS(0.099)QS(0.099)PVVGR;SLLGDS(0.001)APT(0.01)LHLNKGT(0.949)PS(0.035)QS(0.005)PVVGR ; 57.986 0.0039846 69212000 3623.4 2862.3 2527.1 2932.8 4573.7 3340.9 3579.3 3345.8 3614.5 4002.7 TRUE FALSE FALSE 3198.670545 2950.48407 2663.72267 3052.412261 4236.307263 3277.177899 3717.3548 3726.672348 3465.50878 3978.891762 0.803909917 0.741534137 0.669463466 0.767151369 1.064695276 0.823640877 0.934268892 0.936610637 0.870973373 1 11.95815094 YFDPANGK(ac)FSK ddPTM_HeLa_CUDC101_4h_R1 2 YFDPANGKFSK 11 1 P13639 P13639 EEF2 Elongation factor 2 0 1 ; YFDPANGK(1)FSK;YFDPANGK(1)FSK 142.08 0.00024661 2524340 3334.79 2932.01 3107.74 2842.3 3386.9 2882.58 2889.65 3619.71 3031.67 2594.48 FALSE TRUE FALSE 2943.890971 3022.341753 3275.753825 2958.221279 3137.055135 2827.599589 3001.104768 4031.763155 2906.703279 2579.047918 1.14146424 1.171882745 1.270140738 1.147020674 1.21636171 1.096373421 1.163648317 1.563275784 1.127045085 1 11.33262286 -1 0.086379969 0.846266295 2.150259959 0.365024432 0.112834675 106.7810706 0.672264837 1.434457949 16.61238076 0.1 1 1.303993664 SLPELDRDKS(ph)DSDTEGLLFSR ddPTM_HeLa_CUDC101_4h_R1 4 SLPELDRDKSDSDTEGLLFSR 21 2 A0A0C4DH22;A0A1B0GTW6;Q9H4G0-3;Q9H4G0-2;Q9H4G0 A0A0C4DH22 EPB41L1 Band 4.1-like protein 1 1 0 S(0.043)LPELDRDKS(0.73)DS(0.214)DT(0.013)EGLLFSR;SLPELDRDKS(0.982)DS(0.013)DT(0.004)EGLLFSR;SLPELDRDKS(0.965)DS(0.032)DT(0.003)EGLLFSR;S(0.001)LPELDRDKS(0.943)DS(0.048)DT(0.008)EGLLFSR ;;; 93.753 0.00018344 354608000 10181.8 10885 8890.8 9903.2 11057.7 9572.6 9220.4 7853.3 9903 9392.4 TRUE FALSE FALSE 8988.304839 11220.35395 9371.463541 10307.0953 10241.9955 9390.018604 9576.033917 8747.287928 9494.794148 9336.533587 0.962702566 1.201768712 1.003741212 1.103953111 1.096980523 1.005728573 1.025651954 0.936888177 1.016950677 1 13.1886713 SLS(ph)PSHLTEDR ddPTM_HeLa_CUDC101_4h_R1 3 SLSPSHLTEDR 11 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 0 S(0.004)LS(0.969)PS(0.028)HLTEDR;SLS(0.842)PS(0.158)HLTEDR;S(0.016)LS(0.975)PS(0.009)HLTEDR ;; 122.52 0.0023711 187107000 11983.3 7792.5 6892.5 6742.1 12164.9 10267.5 9900.4 9596.6 10883.6 9828.3 TRUE FALSE FALSE 10578.63574 8032.577689 7265.129399 7017.07198 11267.51956 10071.66454 10282.26174 10689.03815 10434.9734 9769.840834 1.08278486 0.822181019 0.743628225 0.718238106 1.153296124 1.030893411 1.052449259 1.094085189 1.068080185 1 13.25411934 SLS(ph)SPTDNLELSLR ddPTM_HeLa_CUDC101_4h_R1 1 SLSSPTDNLELSLR 14 0 J3QRU8;Q9Y2X7;Q9Y2X7-3;A0A0C4DGN6 J3QRU8 GIT1 ARF GTPase-activating protein GIT1 1 0 S(0.002)LS(0.498)S(0.498)PT(0.002)DNLELSLR 237.59 1.40E-43 117150000 3183.9 2470 2278.1 2605.3 3506.5 2230.3 2685.7 2322.5 3026.8 2594.2 TRUE FALSE FALSE 2810.688068 2546.097772 2401.260977 2711.555395 3247.832481 2187.760743 2789.288349 2586.884012 2902.034023 2578.769583 1.089933776 0.987330465 0.931165387 1.051491926 1.259450438 0.848373875 1.081635353 1.003146628 1.125356078 1 11.33246716 YFEQLLEEEREK ddPTM_HeLa_CUDC101_4h_R1 2 YFEQLLEEEREK 12 1 O15460-2;O15460 O15460-2 P4HA2 Prolyl 4-hydroxylase subunit alpha-2 0 0 ; ; 123.28 0.0035087 10604000 2232.22 1992.39 2052.75 2272.29 2713.7 2166.73 2010.77 1826.17 2052.51 1882.41 FALSE FALSE TRUE 1970.562555 2053.773174 2163.727874 2364.963808 2513.515757 2125.403235 2088.326072 2034.053811 1967.904669 1871.213342 1.053093472 1.097562276 1.156323454 1.263866474 1.343254508 1.135842284 1.11602778 1.087024 1.051673064 1 10.86975834 -7.024021079 1.663509731 1.022124769 1.190943451 0.476029605 0.070984855 0.224628992 1.217243963 0.013979742 0.018219445 9.46E-08 7.024021079 0.168818681 YFGGTEDR ddPTM_HeLa_CUDC101_4h_R1 3 YFGGTEDR 8 0 Q16658 Q16658 FSCN1 Fascin 0 0 ;; ;; 138.24 0.0028273 215701000 9353 8341.1 8248.5 8532.6 8558.5 8445.1 8390.8 8503.8 8505 7493.7 FALSE FALSE TRUE 8256.655518 8598.079404 8694.43886 8880.596309 7927.156506 8284.023788 8714.435967 9471.838218 8154.4203 7449.127139 1.108405772 1.154239852 1.167175522 1.192166027 1.064172534 1.112079796 1.169860012 1.271536657 1.094681316 1 12.86285567 -13.52287875 0.10748381 0.459956992 1.254385492 0.352824918 0.057228434 53.89608175 0.427317855 6.345922303 0.349421696 3.00E-14 13.52287875 0.794428499 SLTDPSQESHTEAIS(ph)DAETSSSDISFSGIATR ddPTM_HeLa_CUDC101_4h_R1 1 SLTDPSQESHTEAISDAETSSSDISFSGIATR 32 0 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 0 SLTDPSQESHT(0.007)EAIS(0.927)DAET(0.046)S(0.014)S(0.005)S(0.002)DISFSGIATR 117.15 1.59E-12 44120000 2682.1 2418.6 1684.1 2031 2799 2518.3 1935.9 1705.2 2385.1 2187.8 TRUE FALSE FALSE 2367.708304 2493.114199 1775.14754 2113.832959 2592.523346 2470.267623 2010.568311 1899.313075 2286.785168 2174.786868 1.088708203 1.146371737 0.816239773 0.971972468 1.192081571 1.135866534 0.924489816 0.87333297 1.051498518 1 11.08665831 YFLHDDRDDGVDYWAK ddPTM_HeLa_CUDC101_4h_R1 2 YFLHDDRDDGVDYWAK 16 1 Q9NYF8-2;Q9NYF8;Q9NYF8-4;H0YF14 Q9NYF8-2 BCLAF1 Bcl-2-associated transcription factor 1 0 0 ; ; 82.651 0.0076928 203996000 20191.8 16897.8 18397.4 17163.6 18417.1 18579.9 17499 17988.5 19414.1 18772.9 FALSE FALSE TRUE 17824.94781 17418.40119 19392.01909 17863.6058 17058.50723 18225.51936 18173.94229 20036.23813 18613.84258 18661.23796 0.955185709 0.93340009 1.039160378 0.957257275 0.914114448 0.976651142 0.973887281 1.073682152 0.997460223 1 14.18775707 -4.26139496 8.342130062 0.973266702 1.074344811 0.451093712 0.033652619 0.065395015 65.19373412 0.0046795 0.036928474 5.48E-05 4.26139496 0.101078108 YFLNLVLVDEEDRR ddPTM_HeLa_CUDC101_4h_R1 2 YFLNLVLVDEEDRR 14 1 O75436 O75436 VPS26A Vacuolar protein sorting-associated protein 26A 0 0 ; ; 167.22 7.26E-06 14871700 4143.7 4422.7 4408.2 4756.3 5074.1 4410 4047.3 4266 4798.8 5907.7 FALSE FALSE TRUE 3657.981767 4558.958145 4646.520626 4950.282472 4699.793752 4325.886598 4203.405717 4751.624196 4600.991433 5872.560738 0.622893816 0.776315197 0.79122564 0.84295126 0.800297172 0.736626966 0.715770497 0.80912304 0.783472771 1 12.51977401 -9.53246031 1.294751865 0.999883152 0.747894149 0.083013683 0.087683746 0.229058643 0.688152333 0.050502493 0.012082678 2.93E-10 9.53246031 -0.251989003 SLYES(ph)FVSSSDR ddPTM_HeLa_CUDC101_4h_R1 1 SLYESFVSSSDR 12 0 P18615;P18615-3;A0A0A0MT02;A2ABK4 P18615 NELFE Negative elongation factor E 1 0 S(0.378)LY(0.002)ES(0.62)FVSSSDR 108.68 0.0060838 24916000 757.97 491.17 827.41 893.96 743.14 806.91 692.09 768.83 843.75 743.8 TRUE FALSE FALSE 669.1219056 506.3023655 872.1422874 930.4195528 688.3200427 791.5195362 718.7841431 856.3504995 808.9702679 739.3758445 0.904982102 0.684769957 1.179565567 1.258385109 0.930947431 1.070523932 0.972149886 1.158207299 1.094125909 1 9.530164101 SMCT(ph)PLPVAAQS(ph)TT(ph)LPS(ph)LS(ph)GRQVEINLK ddPTM_HeLa_CUDC101_4h_R1 1 SMCTPLPVAAQSTTLPSLSGRQVEINLK 28 1 A0A075B6E9;A0A494C1A4;Q96NW7-2;Q96NW7 A0A075B6E9 LRRC7 Leucine-rich repeat-containing protein 7 5 0 S(0.213)MCT(0.786)PLPVAAQS(0.578)T(0.578)T(0.886)LPS(0.96)LS(0.998)GRQVEINLK 44.625 0.030127 7253200 616.87 461.02 303.76 511.59 413.79 329.33 457.82 369.79 403.41 325.4 TRUE FALSE FALSE 544.5614337 475.2234798 320.1821844 532.4548515 383.2655361 323.048579 475.4782708 411.8853989 386.7812691 323.4645063 1.68352763 1.469167313 0.989852606 1.646099776 1.184876636 0.998714148 1.469955007 1.27335578 1.195745627 1 8.337463604 YFQINQDEEEEEDED ddPTM_HeLa_CUDC101_4h_R1 10 YFQINQDEEEEEDED 15 0 P35268;K7ERI7 P35268 RPL22 60S ribosomal protein L22 0 0 ;;;;;;;;; ;;;;;;;;; 184.36 5.38E-10 1767318500 59595.4 60816 56614.2 54683.24 64626.8 61175.48 56227.64 58875.6 62564.91 63405.4 FALSE FALSE TRUE 52609.71755 62689.66888 59674.9349 56913.45889 59859.40972 60008.65964 58396.35891 65577.76032 59985.95793 63028.26186 0.834700434 0.994627918 0.946796455 0.902983157 0.949723314 0.952091298 0.926510698 1.040450084 0.951731115 1 15.94371126 SNSIS(ph)QIPSLEEMQQLR ddPTM_HeLa_CUDC101_4h_R1 1 SNSISQIPSLEEMQQLR 17 0 A0A1B0GV57;Q9NYJ8 A0A1B0GV57 TAB2 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 1 0 S(0.009)NS(0.022)IS(0.946)QIPS(0.023)LEEMQQLR 116 0.00053031 5746300 852.98 865.92 287.24 456.93 592.88 876.88 811.74 583.02 645.89 789.58 TRUE FALSE FALSE 752.9949774 892.5979688 302.7690633 475.5655804 549.1444236 860.154975 843.0490837 649.3886402 619.2661408 784.883543 0.959371596 1.137236188 0.385750301 0.605905914 0.699650832 1.095901402 1.074107224 0.827369418 0.788991114 1 9.6163348 SNTEPQSPPIAS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 2 SNTEPQSPPIASPK 14 0 F8WF45;A0A2R8Y7M0;P82094;P82094-2 F8WF45 TMF1 TATA element modulatory factor 1 0 SNTEPQS(0.001)PPIAS(0.999)PK;SNTEPQSPPIAS(1)PK ; 218.83 1.47E-32 38046000 8398.8 7828.2 8099.7 8495.5 9318.5 9634.4 7972.7 9242.6 7764.1 9766.8 TRUE FALSE FALSE 7414.305396 8069.377563 8537.594282 8841.983211 8631.09282 9450.639872 8280.20971 10294.74022 7444.060512 9708.706639 0.763675912 0.831148562 0.879375039 0.9107272 0.88900542 0.973419037 0.852864343 1.060361653 0.766740699 1 13.2450634 SPAVATSTAAPPPPSS(ph)PLPSK ddPTM_HeLa_CUDC101_4h_R1 2 SPAVATSTAAPPPPSSPLPSK 21 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 0 SPAVATSTAAPPPPS(0.057)S(0.943)PLPSK;SPAVATSTAAPPPPS(0.23)S(0.761)PLPS(0.009)K ; 197.41 9.06E-19 464190000 7158.1 7117.5 5870.7 5981.8 6684.3 5633.3 6202.4 6004 5877.2 6277.1 TRUE FALSE FALSE 6319.038369 7336.781739 6188.0878 6225.76366 6191.212506 5525.854188 6441.628646 6687.471091 5634.939328 6239.76353 1.012704783 1.175810863 0.991718319 0.997756346 0.992219092 0.885587116 1.032351405 1.071750726 0.903069371 1 12.60727564 SPCS(ph)VVGNS(ph)NS(ph)QNK ddPTM_HeLa_CUDC101_4h_R1 1 SPCSVVGNSNSQNK 14 0 Q9HCM1 Q9HCM1 KIAA1551 Uncharacterized protein KIAA1551 3 0 S(0.141)PCS(0.859)VVGNS(1)NS(1)QNK 64.275 0.003353 0 2474.7 1247.5 1088.3 1214.8 2493.1 1850.8 2244 1877.9 2003.1 1736.8 TRUE FALSE FALSE 2184.619417 1285.933996 1147.13679 1264.344795 2309.18898 1815.499074 2330.551832 2091.672545 1920.53137 1726.469436 1.265368139 0.744834498 0.664440833 0.732329671 1.337520915 1.051567456 1.349894636 1.211531754 1.112403921 1 10.75360908 YGEAGEGPGWGGAHPR ddPTM_HeLa_CUDC101_4h_R1 2 YGEAGEGPGWGGAHPR 16 0 P26640;A2ABF4;A0A0G2JJT9;A0A140T954 P26640 VARS Valine--tRNA ligase 0 0 ; ; 156.2 8.58E-05 21688000 6338.3 5769.2 5508 5439.7 6141.6 5621.6 5812.8 5859.1 6527.2 5677.8 FALSE FALSE TRUE 5595.334082 5946.942214 5805.779141 5661.554478 5688.546404 5514.377346 6037.001643 6526.076261 6258.146053 5644.028193 0.991372454 1.053669828 1.028658777 1.00310528 1.007887666 0.977028668 1.069626415 1.156279883 1.108808432 1 12.46250948 -4.441716602 2.815177413 1.002727243 1.159836238 0.473702263 0.03958268 0.093474192 1.226762819 0.003137794 0.027206836 3.62E-05 4.441716602 0.157108995 SPPLIGSESAYESFLS(ph)ADDKASGR ddPTM_HeLa_CUDC101_4h_R1 1 SPPLIGSESAYESFLSADDKASGR 24 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 S(0.001)PPLIGS(0.078)ES(0.098)AY(0.221)ES(0.256)FLS(0.341)ADDKAS(0.004)GR 48.854 0.025615 4067500 515.21 432.69 317.44 470.63 524.72 555.61 356.3 447.43 469.91 405.91 TRUE FALSE FALSE 454.8178648 446.020666 334.6017666 489.8243256 486.012451 545.012665 370.0426104 498.3636226 450.5401109 403.4956293 1.127194031 1.105391567 0.829257475 1.213951999 1.204504871 1.350727555 0.917091992 1.235115294 1.116592295 1 8.656409236 YGEYFPGTGDLR ddPTM_HeLa_CUDC101_4h_R1 2 YGEYFPGTGDLR 12 0 Q92769;Q92769-3;Q5TEE2;Q13547 Q92769;Q13547 HDAC2;HDAC1 Histone deacetylase 2;Histone deacetylase 1 0 0 ; ; 136.96 0.0074458 22189000 3802.6 3176.7 3591.2 3161.7 3349.6 3032.8 3155.6 3002.8 3552.5 3936.2 FALSE FALSE TRUE 3356.864992 3274.570362 3785.351135 3290.647792 3102.506681 2974.954393 3277.312549 3344.626614 3406.064446 3912.787307 0.857921663 0.836889436 0.967430846 0.840998381 0.792914727 0.760315897 0.837590263 0.854793872 0.87049568 1 11.93398097 -13.52287176 0.157167392 1.628866922 0.789902664 0.161961048 0.062813271 31.11850357 0.328386521 5.982956738 0.101783827 3.00E-14 13.52287176 -0.838964257 SPPLIGSESAYESFLSADDKAS(ph)GR ddPTM_HeLa_CUDC101_4h_R1 1 SPPLIGSESAYESFLSADDKASGR 24 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 SPPLIGSESAY(0.006)ES(0.019)FLS(0.179)ADDKAS(0.795)GR 52.577 0.014862 14459000 1456.6 984.7 1193 915.71 1302.8 1346.5 1130.1 1039.6 1162.8 1199 TRUE FALSE FALSE 1285.859556 1015.03744 1257.497189 953.0566118 1206.69504 1320.817756 1173.688336 1157.943862 1114.868892 1191.868295 1.078860443 0.851635574 1.055063881 0.79963249 1.012439919 1.108191032 0.984746671 0.97153676 0.935396047 1 10.21900911 SPRPT(ph)GSDLLPGAPILSLR ddPTM_HeLa_CUDC101_4h_R1 1 SPRPTGSDLLPGAPILSLR 19 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 0 S(0.278)PRPT(0.68)GS(0.042)DLLPGAPILSLR 99.313 0.027447 34221000 479.57 672.18 319.25 484.39 316.08 363.72 418.22 424.26 354.81 543.62 TRUE FALSE FALSE 423.3555316 692.8890691 336.5096207 504.1455179 292.7634081 356.782647 434.3508855 472.5560435 340.1845816 540.3865241 0.783430957 1.282210119 0.62272023 0.93293503 0.541766671 0.660236018 0.803778159 0.874477846 0.629520846 1 9.077847888 SPS(ph)MPENLNRPR ddPTM_HeLa_CUDC101_4h_R1 2 SPSMPENLNRPR 12 1 D6RJC2;P30307-4;P30307-3;P30307-2;P30307;H0Y999 D6RJC2 CDC25C M-phase inducer phosphatase 3 1 0 S(0.152)PS(0.848)MPENLNRPR;S(0.053)PS(0.947)MPENLNRPR ; 77.372 0.022844 76823000 3502.3 3256.2 3086.2 3144.5 3249.8 2984.1 3139.1 3104.8 3255 3380.1 TRUE FALSE FALSE 3091.765703 3356.519662 3253.049307 3272.746302 3010.068729 2927.183264 3260.176139 3458.237882 3120.827522 3359.995015 0.920169729 0.998965667 0.968170873 0.974033083 0.895855117 0.871186788 0.970291957 1.029238992 0.928819093 1 11.71424338 SPS(ph)PLSGHVAQAFPTK ddPTM_HeLa_CUDC101_4h_R1 1 SPSPLSGHVAQAFPTK 16 0 Q6P0Q8;A0A669KBJ4 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 S(0.037)PS(0.961)PLS(0.002)GHVAQAFPTK 118.31 0.00017263 0 1428.3 1400.8 1111.5 991.85 1441.4 1169.6 1079.4 1368.7 1289.2 1282.7 TRUE FALSE FALSE 1260.876839 1443.956988 1171.591052 1032.30193 1335.070794 1147.291829 1121.03282 1524.507276 1236.05863 1275.070443 0.988868376 1.132452717 0.918844177 0.809603842 1.047056498 0.899787015 0.879192852 1.195625923 0.96940419 1 10.31636124 YGGPYHIGGSPFK(ac)AK ddPTM_HeLa_CUDC101_4h_R1 1 YGGPYHIGGSPFKAK 15 1 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 1 YGGPYHIGGSPFK(1)AK 51.939 0.03604 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SPSFGDPQLS(ph)PEARPR ddPTM_HeLa_CUDC101_4h_R1 2 SPSFGDPQLSPEARPR 16 1 O95425-3;O95425-2 O95425-3 SVIL Supervillin 1 0 SPSFGDPQLS(1)PEARPR;SPSFGDPQLS(1)PEARPR ; 103.73 0.0017161 217700000 6013.2 5070.6 5518.8 5549.8 5773.2 4639.8 4908.1 6314 5459 5761.6 TRUE FALSE FALSE 5308.341811 5226.819176 5817.163021 5776.144832 5347.322538 4551.303545 5097.407061 7032.760238 5233.977709 5727.329747 0.926844105 0.912610135 1.015685019 1.008523184 0.933650195 0.794664136 0.890014594 1.227930039 0.913860026 1 12.48364695 SPVVSGDTS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SPVVSGDTSPR 11 0 I3L170;A0A0G2JQJ7;A0A0G2JPD5;A0A0G2JS76;A0A0G2JMX7;P10636-3;P10636-2;P10636-4;P10636-6;P10636-5;P10636-7;P10636-8;P10636;P10636-9 I3L170 MAPT Microtubule-associated protein;Microtubule-associated protein tau 1 0 SPVVSGDT(0.228)S(0.772)PR 112.64 0.0062336 20116000 2549.8 2354.6 2621.6 2205.2 2614.3 2107.5 2276.9 2565.7 2341.3 2758.1 TRUE FALSE FALSE 2250.916309 2427.142435 2763.331626 2295.137588 2421.448297 2067.302949 2364.720796 2857.768917 2244.790623 2741.694699 0.820994515 0.885270864 1.007891808 0.837123692 0.883193996 0.754023761 0.862503326 1.042336668 0.818760245 1 11.42085221 SQASMVINSDT(ph)DDEEEVSAALTLAHLK ddPTM_HeLa_CUDC101_4h_R1 1 SQASMVINSDTDDEEEVSAALTLAHLK 27 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 0 SQAS(0.002)MVINS(0.427)DT(0.514)DDEEEVS(0.056)AALT(0.001)LAHLK 75.654 0.00016729 3164500 838.26 1090 1069.5 803.76 975.99 914.3 805.73 704.51 1372.7 894.72 TRUE FALSE FALSE 740.0004335 1123.581608 1127.320405 836.5408069 903.9931621 896.8612508 836.807276 784.7085707 1316.116725 889.3981656 0.832023791 1.263305515 1.267509254 0.940569521 1.016409969 1.008391163 0.940869127 0.882291645 1.479783494 1 9.796685619 SQIHDIVLVGGS(ph)TR ddPTM_HeLa_CUDC101_4h_R1 1 SQIHDIVLVGGSTR 14 0 P11142;E9PKE3;P11142-2;E9PN89;E9PNE6;A8K7Q2 P11142 HSPA8 Heat shock cognate 71 kDa protein 1 0 SQIHDIVLVGGS(0.798)T(0.202)R 68.134 0.032275 5496000 5501.7 4003.5 4077.5 3558.7 6412 5169.5 4081 4143.6 5189 4843.3 TRUE FALSE FALSE 4856.799066 4126.84309 4297.941984 3703.839168 5938.999535 5070.9004 4238.405537 4615.290675 4975.107224 4814.491836 1.008787476 0.857171064 0.892709372 0.76931051 1.233567267 1.053257659 0.880343281 0.958624676 1.033360818 1 12.23316782 SQS(ph)LPHSATVTLGGTSDPSTLSSSALSER ddPTM_HeLa_CUDC101_4h_R1 1 SQSLPHSATVTLGGTSDPSTLSSSALSER 29 0 F8WDP1;A0A0A0MRY0;Q8WUA7-3;Q8WUA7-4;Q8WUA7 F8WDP1 TBC1D22A TBC1 domain family member 22A 1 0 S(0.17)QS(0.395)LPHS(0.195)AT(0.195)VT(0.046)LGGTSDPSTLSSSALSER 62.052 0.00036746 0 927.98 462.65 704.16 630.9 820.75 518.78 501.11 886.58 929.73 691.5 TRUE FALSE FALSE 819.2035911 476.9036981 742.2290196 656.630829 760.2049077 508.8851358 520.4379806 987.5046835 891.4061359 687.3869272 1.191764869 0.693792214 1.079783438 0.955256498 1.105934485 0.740318321 0.757125223 1.436606727 1.296804028 1 9.424978605 SQSS(ph)DT(ph)EQQSPTSGGGK ddPTM_HeLa_CUDC101_4h_R1 1 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 0 SQS(0.013)S(0.987)DT(0.611)EQQS(0.388)PTSGGGK 156.29 0.00023985 4042000 2182.2 4531.1 2168.8 2675.1 2209.3 2292.8 2402.8 2803.8 2475.5 2816 TRUE FALSE FALSE 1926.405824 4670.69782 2286.051888 2784.202141 2046.324341 2249.06866 2495.476801 3122.973259 2373.458842 2799.250307 0.68818634 1.668553115 0.816665763 0.994624216 0.731025852 0.80345393 0.891480406 1.115646304 0.847890893 1 11.45082478 SRPT(ph)TVPTTGS(ph)S(ph)RRR ddPTM_HeLa_CUDC101_4h_R1 1 SRPTTVPTTGSSRRR 15 3 F5GZM8 F5GZM8 ATP8B3 3 0 S(0.373)RPT(0.619)T(0.005)VPT(0.024)T(0.024)GS(0.968)S(0.987)RRR 79.347 0.011957 3882100 1475.7 1277.7 1709.2 1009.5 1774.6 1716.8 1279.1 1011 1558 1444.8 TRUE FALSE FALSE 1302.720683 1317.064423 1801.604522 1050.671773 1643.691294 1684.0549 1328.435315 1126.088153 1493.778581 1436.206265 0.907056817 0.917044059 1.254419066 0.7315605 1.14446743 1.172571755 0.92496137 0.784071328 1.040086384 1 10.48804725 SK(ac)IPNEHK(ac)KPAEVFR ddPTM_HeLa_CUDC101_4h_R1 2 SKIPNEHKKPAEVFR 15 3 Q92613;F2Z2B6;F2Z3N8 Q92613 JADE3 Protein Jade-3 0 2 ; SK(1)IPNEHK(0.998)K(0.002)PAEVFR;SK(1)IPNEHK(0.978)K(0.022)PAEVFR 106.14 0.0043903 16504500 8302.6 5862.2 6556.9 6607.1 11278 9405.1 9654.6 12365.5 6150.4 6399 FALSE TRUE FALSE 7329.381814 6042.807434 6911.385848 6876.566096 10446.04441 9225.713387 10026.98116 13773.13854 5896.877909 6360.938463 1.152248502 0.949986778 1.086535562 1.081061566 1.642217492 1.450369854 1.576336764 2.165268319 0.927045269 1 12.63502391 -1 0.388761691 1.038907972 17.63061492 0.860073992 0.141534496 15.60565765 0.187305524 0.034950017 198.7990859 0.1 1 16.59170695 YGQNCHK(ac)GPPHSK ddPTM_HeLa_CUDC101_4h_R1 2 YGQNCHKGPPHSK 13 1 O15355 O15355 PPM1G Protein phosphatase 1G 0 1 ; YGQNCHK(1)GPPHSK;YGQNCHK(1)GPPHSK 80.312 0.014656 2182800 598.18 487.57 546.22 493.1 569.43 750.18 533.03 694.13 397.53 215.33 FALSE TRUE FALSE 528.0622472 502.5914538 575.7503054 513.2107494 527.4242834 735.8715664 553.5891457 773.1469534 381.1436451 214.0492076 2.467013324 2.348018287 2.689803489 2.397629756 2.46403287 3.437861671 2.586270474 3.612005679 1.780635628 1 7.741798684 -9.177828477 0.226549484 2.45E-18 3.273118418 0.69048174 0.391752729 1.793103394 0.143676657 1.748892037 0.39395529 6.64E-10 9.177828477 3.273118418 SRS(ph)SDIVSSVR ddPTM_HeLa_CUDC101_4h_R1 2 SRSSDIVSSVR 11 1 Q14C86-5;Q14C86-2;Q14C86;Q14C86-6;Q14C86-3;Q14C86-4;F8W9S7;H0Y7I9;C9IZ08;H0Y4E7 Q14C86-5 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 0 S(0.001)RS(0.499)S(0.499)DIVSSVR;S(0.138)RS(0.431)S(0.431)DIVSSVR ; 113.43 0.0033739 128691000 4547.5 3288.71 3168 3473.12 3450.61 3398.22 2978.03 3801.13 3436.2 3099.89 TRUE FALSE FALSE 4014.448944 3390.031257 3339.271663 3614.768846 3196.065375 3333.404615 3092.893615 4233.835275 3294.558382 3081.451716 1.302778467 1.100140962 1.083668339 1.173073336 1.037194696 1.081764351 1.003713152 1.373974238 1.069157879 1 11.58939447 SRT(ph)AS(ph)LTSAASVDGNR ddPTM_HeLa_CUDC101_4h_R1 1 SRTASLTSAASVDGNR 16 1 G3V578;H0YJT9;A0A0A0MS87;Q9UN36-4;Q9UN36-5;Q9UN36-2;Q9UN36-3;Q9UN36-6;Q9UN36 G3V578 NDRG2 Protein NDRG2 2 0 S(0.335)RT(0.67)AS(0.715)LT(0.113)S(0.16)AAS(0.006)VDGNR 132.5 0.0039089 6668700 3117.5 3033.1 3233.1 2666.5 3619.6 3159.9 3179 2849.4 3122.9 3337.6 TRUE FALSE FALSE 2752.071376 3126.546216 3407.891166 2775.251396 3352.589319 3099.630172 3301.615095 3173.764178 2994.17274 3317.747807 0.82949987 0.942370065 1.027170045 0.836486544 1.010501555 0.934257319 0.995137451 0.956601997 0.90247147 1 11.69598851 SRY(ph)RS(ph)SPTVYNSPT(ph)DK ddPTM_HeLa_CUDC101_4h_R1 1 SRYRSSPTVYNSPTDK 16 2 Q96SK2-3;Q96SK2-2;Q96SK2 Q96SK2-3 TMEM209 Transmembrane protein 209 3 0 S(0.199)RY(0.424)RS(0.474)S(0.296)PT(0.382)VY(0.225)NS(0.117)PT(0.883)DK 84.94 0.0017062 0 1507.5 1298.6 1626.8 1477.2 1698.8 1947.1 1320.2 1378.7 1665.5 1786.7 TRUE FALSE FALSE 1330.793135 1338.608327 1714.749729 1537.446601 1573.482908 1909.962312 1371.120556 1535.645635 1596.847385 1776.072629 0.749289817 0.753690083 0.965472752 0.865643992 0.885933876 1.075385252 0.77199577 0.864629976 0.899089012 1 10.79447486 SS(ph)PGAGPSDHHSASR ddPTM_HeLa_CUDC101_4h_R1 1 SSPGAGPSDHHSASR 15 0 I3VM54;Q9Y2K7-3;Q9Y2K7;Q9Y2K7-4;Q9Y2K7-5;Q9Y2K7-2 I3VM54 KDM2A Lysine-specific demethylase 2A 1 0 S(0.193)S(0.807)PGAGPSDHHSASR 100.02 0.0037435 334540 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SS(ph)VDLEESSTK ddPTM_HeLa_CUDC101_4h_R1 1 SSVDLEESSTK 11 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 S(0.286)S(0.714)VDLEESSTK 286.19 8.60E-103 65182000 4515.8 4413.7 3871.4 4194.2 4853 4456.8 3672.9 3720.9 3658.9 4085.6 TRUE FALSE FALSE 3986.46477 4549.680865 4080.699594 4365.257605 4495.003859 4371.793966 3814.564983 4144.472216 3508.078593 4061.298669 0.981573899 1.120252716 1.004777025 1.074842793 1.106789779 1.076452219 0.939247589 1.020479544 0.863782469 1 11.98772541 YGVIILDEAHER ddPTM_HeLa_CUDC101_4h_R1 4 YGVIILDEAHER 12 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 0 ;;; ;;; 158.06 0.00014416 39200800 16318.1 15557.8 14877.6 14562.5 16711.6 15887.1 15112.6 15498.2 17049.7 18004.7 FALSE FALSE TRUE 14405.31705 16037.11738 15681.92806 15156.42169 15478.81856 15584.08004 15695.49804 17262.45244 16346.90415 17897.60724 0.804873906 0.896048123 0.876202491 0.846840669 0.864854075 0.870735391 0.876960693 0.964511748 0.91335696 1 14.1274791 -9.511499493 1.25582408 1.000176474 0.866563139 0.254990072 0.046229529 0.254948347 0.718193005 0.029169884 0.006996726 3.08E-10 9.511499493 -0.133613335 SSEMS(ph)PVPMR ddPTM_HeLa_CUDC101_4h_R1 2 SSEMSPVPMR 10 0 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7;B7Z7Y1;Q8TEU7-2;Q8TEU7-5;Q8TEU7-3;D6RE77 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 0 S(0.368)S(0.007)EMS(0.625)PVPMR;S(0.04)S(0.004)EMS(0.956)PVPMR ; 112.83 0.0073164 115641000 7507.1 6168.5 6286 6541.9 7175.3 5889.2 6320.5 5954.9 7304.5 6710.6 TRUE FALSE FALSE 6627.129118 6358.544174 6625.840174 6808.706959 6645.992414 5776.873322 6564.283802 6632.781745 7003.405418 6670.685053 0.993470545 0.953207073 0.99327732 1.020690814 0.996298335 0.866009005 0.984049427 0.994317929 1.04987799 1 12.70361921 YGYEIPVDMLCK ddPTM_HeLa_CUDC101_4h_R1 1 YGYEIPVDMLCK 12 0 G3V5Z7;P60900-3;P60900-2;P60900;G3V295;G3V3I1 G3V5Z7 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 0 0 145.17 0.004883 13998000 2063.2 1488.3 1232.5 1278.9 1419.4 1533.9 1079.4 1020.4 1273.4 651.07 FALSE FALSE TRUE 1821.354824 1534.152759 1299.132678 1331.05907 1314.69369 1504.643413 1121.03282 1136.558211 1220.909913 647.1974067 2.814218359 2.370455665 2.007320587 2.056650809 2.031364274 2.324860078 1.732134289 1.756122938 1.886456745 1 9.338062017 -9.532853458 1.307785762 1.003329808 2.209554078 0.210267299 0.402759101 0.24239771 0.745673002 0.256705882 0.062006049 2.93E-10 9.532853458 1.20622427 SSEPVKETVQTTQS(ph)PTPVEK ddPTM_HeLa_CUDC101_4h_R1 2 SSEPVKETVQTTQSPTPVEK 20 1 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 0 SSEPVKETVQTTQS(0.963)PT(0.037)PVEK;SSEPVKETVQTT(0.001)QS(0.845)PT(0.154)PVEK ; 186.62 4.45E-12 444830000 12638.7 11309.6 10619.7 11367.1 11368.7 11077.1 9876.1 10149.1 11808 11044.3 TRUE FALSE FALSE 11157.21075 11658.03537 11193.8331 11830.69947 10530.05365 10865.82277 10257.02449 11304.43252 11321.26924 10978.60801 1.016268249 1.061886476 1.019604042 1.077613797 0.959142875 0.989726818 0.934273678 1.029678126 1.031211719 1 13.42240752 SSGHSSS(ph)ELSPDAVEK ddPTM_HeLa_CUDC101_4h_R1 1 SSGHSSSELSPDAVEK 16 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 0 SSGHS(0.004)S(0.065)S(0.913)ELS(0.018)PDAVEK 108.66 0.0019182 20588000 3073.9 2246 2241.1 1975.9 3089.2 2047.8 2635.7 2359.6 2914.8 2375.7 TRUE FALSE FALSE 2713.582102 2315.196598 2362.260645 2056.485743 2861.315871 2008.741627 2737.359832 2628.207326 2794.65071 2361.569231 1.149058883 0.980363636 1.000292777 0.870813235 1.211616341 0.850596121 1.159127497 1.112907169 1.183387162 1 11.20553011 YHDPDDEPDCAPPFDFAFDR ddPTM_HeLa_CUDC101_4h_R1 1 YHDPDDEPDCAPPFDFAFDR 20 0 Q13164-3;Q13164;Q13164-4;Q13164-2 Q13164-3 MAPK7 Mitogen-activated protein kinase 7 0 0 97.32 0.00095908 6000300 899.45 617.95 788.18 685.07 755.76 990.78 872.96 685.03 885.3 752.95 FALSE FALSE TRUE 794.0178345 636.988307 830.7913949 713.0101157 700.0090905 971.8825223 906.6303596 763.0110462 848.8075593 748.4714199 1.060852577 0.851052278 1.109984126 0.952621699 0.935251597 1.298489824 1.211309257 1.01942576 1.134054737 1 9.547803418 -5.270506009 24.98436637 1.010687185 1.179898381 0.370371353 0.101517341 448.4481261 1235761.611 0.012873165 0.029173758 5.36E-06 5.270506009 0.169211197 YHEEFEK ddPTM_HeLa_CUDC101_4h_R1 4 YHEEFEK 7 0 C9J9W2;Q14847;Q14847-2;Q14847-3 C9J9W2 LASP1 LIM and SH3 domain protein 1 0 0 ;;; ;;; 130.04 0.0099806 131250400 34972 31344.7 35058.8 33314.8 36543.8 36033.3 34244.5 34057.5 38309.7 36079.3 FALSE FALSE TRUE 30872.63517 32310.39305 36954.18478 34673.52154 33848.03668 35346.02484 35565.32184 37934.46813 36730.55795 35864.69872 0.860808435 0.900896821 1.030377672 0.966786918 0.943770278 0.985538039 0.991652603 1.057710492 1.024142381 1 15.13027689 -6.766973354 24.99985457 0.929931058 0.991602539 0.142128617 0.053123118 171.2502479 773627.6258 0.009744861 0.013009073 1.71E-07 6.766973354 0.061671481 SSGNSSSSGSGSGSTSAGS(ph)SSPGAR ddPTM_HeLa_CUDC101_4h_R1 1 SSGNSSSSGSGSGSTSAGSSSPGAR 25 0 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNS(0.001)SSSGS(0.001)GS(0.008)GS(0.008)T(0.008)S(0.008)AGS(0.322)S(0.322)S(0.322)PGAR 61.649 0.0046225 533020 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 YHIEVNR ddPTM_HeLa_CUDC101_4h_R1 3 YHIEVNR 7 0 Q15029-3;Q15029;Q15029-2 Q15029-3 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component 0 0 ;; ;; 114.72 0.012025 10984600 3543.04 3231.22 3482.61 3298.37 4406.87 3270.76 3579.71 3811.81 4289.51 3983.04 FALSE FALSE TRUE 3127.730222 3330.770058 3670.890431 3432.891785 4081.78398 3208.375702 3717.780614 4245.731043 4112.694582 3959.348701 0.789960789 0.841241909 0.92714502 0.867034466 1.030923086 0.810329159 0.938987923 1.072330669 1.038730077 1 11.95104742 YHPGYFGK ddPTM_HeLa_CUDC101_4h_R1 2 YHPGYFGK 8 0 P46776;E9PLL6 P46776 RPL27A 60S ribosomal protein L27a 0 0 ; ; 91.906 0.024794 85108000 27536.4 22560.1 22717.5 23416.2 20632.9 21487.5 19781.5 20632.6 20770.8 14394 FALSE FALSE TRUE 24308.62493 23255.14994 23945.67677 24371.21385 19110.85207 21077.66174 20544.47908 22981.33178 19914.61883 14308.38385 1.698907801 1.625281387 1.673541682 1.703282083 1.335640159 1.473098706 1.435835053 1.606144483 1.39181469 1 13.80457311 -9.32534482 1.002084859 0.993421773 1.57108347 0.37847491 0.163708887 0.222874575 0.393574517 0.093139613 0.023537965 4.73E-10 9.32534482 0.577661696 YHSDFNR ddPTM_HeLa_CUDC101_4h_R1 2 YHSDFNR 7 0 Q15424-2;Q15424;Q15424-4;Q15424-3;K7EII0 Q15424-2 SAFB Scaffold attachment factor B1 0 0 ; ; 177.71 2.12E-05 6652000 1397.11 696.41 622.46 1288.2 703.64 786.31 652.39 474.93 604.44 527.88 FALSE FALSE TRUE 1233.342884 717.8655667 656.1120704 1340.738364 651.733879 771.3124468 677.5529008 528.9941115 579.5247274 524.7401463 2.350387887 1.368040108 1.250356153 2.555052007 1.242012611 1.469894103 1.291216054 1.008106803 1.104403258 1 9.03545936 -4.669413212 1.274908053 1.647894832 0.96886843 0.090832337 0.492005782 1.362979339 3.004176354 0.087234066 0.99355025 2.14E-05 4.669413212 -0.679026401 YHTINGHNAEVR ddPTM_HeLa_CUDC101_4h_R1 4 YHTINGHNAEVR 12 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 0 ;;; ;;; 191.33 2.01E-11 103113000 7856.6 5671.4 6283.6 6507.3 8216.3 7644.9 7343.4 6312.8 7430 6087.7 FALSE FALSE TRUE 6935.661258 5846.129112 6623.310423 6772.695821 7610.199918 7499.08627 7626.637398 7031.423635 7123.732255 6051.49009 1.146108009 0.966064395 1.094492484 1.119178206 1.257574549 1.239213179 1.260290818 1.161932603 1.17718647 1 12.56307471 -5.949069519 2.88884742 1.063528854 1.232775721 0.553236172 0.064232049 0.140045928 2.38069246 0.009971748 0.018883163 1.12E-06 5.949069519 0.169246867 YHTSQSGDEMTSLSEYVSR ddPTM_HeLa_CUDC101_4h_R1 1 YHTSQSGDEMTSLSEYVSR 19 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 0 99.313 0.0014862 10207000 1081.7 747.79 579.35 643.22 1202.9 966.47 784.93 796.97 801.01 858.33 FALSE FALSE TRUE 954.9047658 770.8285236 610.6714134 669.4532918 1114.164464 948.036195 815.205013 887.6938433 767.9920288 853.224615 1.11917161 0.903429777 0.715721749 0.78461554 1.305827849 1.111121478 0.955440102 1.040398774 0.900105336 1 9.736781777 -5.760602908 24.99995198 0.999490466 1.093208955 0.14986476 0.150805082 53.80966563 1608139.787 0.025005888 0.047762206 1.74E-06 5.760602908 0.09371849 YHTVNGHNCEVR ddPTM_HeLa_CUDC101_4h_R1 2 YHTVNGHNCEVR 12 0 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8VZ49;A0A2R8Y4L2;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 0 ; ; 147.58 0.00061922 90324900 1637.96 1065.31 1405.65 1215 1780.03 1469.45 1647.25 1088.99 1654.2 1149.53 FALSE FALSE TRUE 1445.960812 1098.130938 1481.643691 1264.552952 1648.720733 1441.42269 1710.784984 1212.95622 1586.013176 1142.692544 1.265397958 0.961002978 1.296624974 1.106643215 1.442838444 1.261426529 1.497152487 1.061489572 1.387961428 1 10.15822157 -6.110113252 1.627508924 1.120096909 1.318905238 0.072603453 0.171496646 0.403316634 2.101381198 0.024639237 0.048142801 7.76E-07 6.110113252 0.198808329 YHVLVNLGK ddPTM_HeLa_CUDC101_4h_R1 1 YHVLVNLGK 9 0 O75643;A0A494C1A5;O75643-2 O75643 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 0 87.181 0.020319 1521900 4852.9 3022.3 2220.3 3304.1 3403.3 3060.2 2671.8 2144 2442 1526.9 FALSE FALSE TRUE 4284.050419 3115.413481 2340.336134 3438.85548 3152.245339 3001.831784 2774.852221 2388.064294 2341.339726 1517.817931 2.822506133 2.05256073 1.541908345 2.265657435 2.076827052 1.977728503 1.828185163 1.573353592 1.542569552 1 10.56778303 -6.25175592 23.59257951 1.878206315 1.947110716 0.009408806 0.468206133 4315.516608 10514215.11 0.106423408 0.174873289 5.60E-07 6.25175592 0.068904401 YHYLGGR ddPTM_HeLa_CUDC101_4h_R1 2 YHYLGGR 7 0 Q8NCW5-2;Q8NCW5 Q8NCW5-2 APOA1BP NAD(P)H-hydrate epimerase 0 0 ; ; 109.7 0.013163 11643800 8501.1 6530.9 5901.2 7140.5 7337.6 5788.8 6287 5149.2 5749.1 3773.13 FALSE FALSE TRUE 7504.613945 6732.109288 6220.236722 7431.720454 6796.319867 5678.388285 6529.491696 5735.364114 5512.119665 3750.687255 2.000863691 1.794900196 1.658425856 1.981428989 1.812019879 1.513959416 1.740878738 1.529150186 1.469629241 1 11.87293926 -9.391502195 1.069931443 0.991796505 1.772370889 0.446363803 0.207362919 0.204825567 0.412413643 0.121985388 0.029914089 4.06E-10 9.391502195 0.780574384 SSGNSSSSGSGSGSTSAGS(ph)SSPGARR ddPTM_HeLa_CUDC101_4h_R1 2 SSGNSSSSGSGSGSTSAGSSSPGARR 26 1 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNSSSSGSGSGST(0.001)S(0.005)AGS(0.359)S(0.359)S(0.275)PGARR;SSGNSSSSGSGSGS(0.001)T(0.002)S(0.096)AGS(0.3)S(0.3)S(0.3)PGARR ; 92.589 4.12E-06 27323710 133.96 147.39 0 68.62 107.9 0 0 0 147.86 0 TRUE FALSE FALSE 118.2574119 151.9309112 0 71.4186202 99.94043197 0 0 0 141.7651482 0 0 SSGNSSSSGSGSGSTSAGSS(ph)SPGAR ddPTM_HeLa_CUDC101_4h_R1 1 SSGNSSSSGSGSGSTSAGSSSPGAR 25 0 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNSSSSGS(0.001)GS(0.003)GS(0.006)T(0.014)S(0.033)AGS(0.143)S(0.399)S(0.399)PGAR 67.994 0.00081213 453390 68.823 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 60.75567227 0 0 0 0 0 0 0 0 0 0 SSGNSSSSGSGSGSTSAGSS(ph)SPGARR ddPTM_HeLa_CUDC101_4h_R1 2 SSGNSSSSGSGSGSTSAGSSSPGARR 26 1 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNSSSSGSGSGSTS(0.001)AGS(0.171)S(0.657)S(0.171)PGARR;SSGNSSSSGSGSGS(0.001)T(0.002)S(0.007)AGS(0.087)S(0.452)S(0.452)PGARR ; 113.28 4.39E-08 26324800 218.27 58.965 206.5 209.17 107.38 0 164.09 141.81 177.17 0 TRUE FALSE FALSE 192.6847215 60.78164176 217.6640146 217.7008567 99.45879133 0 170.4190063 157.9530772 169.8669776 0 0 YIHLENLLAR ddPTM_HeLa_CUDC101_4h_R1 2 YIHLENLLAR 10 0 Q2TAY7 Q2TAY7 SMU1 "WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed" 0 0 ; ; 166.07 1.10E-08 443840 5530.28 4414.64 3887.67 4237.95 4643.29 4158.63 3975.914 3861.3 3290 2901.1 FALSE FALSE TRUE 4882.028962 4550.649826 4097.8492 4410.791919 4300.763747 4079.311061 4129.266335 4300.854784 3154.384807 2883.844128 1.692889333 1.577980509 1.420967645 1.529483468 1.491330168 1.414539372 1.431861831 1.491361736 1.093812518 1 11.49377747 -9.42259101 1.128016201 0.997413403 1.517248056 0.827268071 0.08356271 0.170769313 0.385586506 0.070032977 0.017290955 3.78E-10 9.42259101 0.519834654 YIHPDDELVLEDELQR ddPTM_HeLa_CUDC101_4h_R1 2 YIHPDDELVLEDELQR 16 0 C9JLE1;F8W8R3;A0A087WWF6;P49005;C9IZD2;C9J8Z7 C9JLE1 POLD2 DNA polymerase delta subunit 2 0 0 ; ; 192.46 8.44E-12 10427700 7672 6011.4 5783.8 5883.1 6604 5903.5 5477.5 5221.7 6503.5 6226 FALSE FALSE TRUE 6772.69979 6196.604109 6096.489723 6123.038247 6116.836077 5790.900573 5688.76901 5816.117221 6235.422977 6188.967475 1.094318207 1.001233911 0.985057645 0.989347298 0.988345164 0.93568121 0.919179012 0.939755661 1.00750618 1 12.59548302 -5.952144484 0.84827682 1.042184179 0.927653536 0.590281958 0.029870135 0.35086195 0.482740545 0.007324109 0.021666164 1.12E-06 5.952144484 -0.114530643 SSGNSSSSGSGSGSTSAGSSS(ph)PGARR ddPTM_HeLa_CUDC101_4h_R1 1 SSGNSSSSGSGSGSTSAGSSSPGARR 26 1 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 0 SSGNSSSSGSGSGSTS(0.001)AGS(0.004)S(0.057)S(0.939)PGARR 97.059 2.37E-06 5524300 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 YINENLIVNTDELGR ddPTM_HeLa_CUDC101_4h_R1 2 YINENLIVNTDELGR 15 0 P17987;E7ERF2;F5H7Y1;F5H136 P17987 TCP1 T-complex protein 1 subunit alpha 0 0 ; ; 169.58 4.39E-06 8864600 1125.97 1418.96 1023.1 1123.54 1118.95 1010.6 932.26 1035.06 1138.45 1184.7 FALSE FALSE TRUE 993.9855035 1462.676476 1078.411881 1169.362818 1036.407288 991.3244888 968.2175805 1152.887047 1091.522609 1177.653352 0.844039124 1.242026334 0.915729471 0.992960123 0.880061426 0.841779533 0.822158387 0.978969783 0.926862398 1 10.20169922 -5.684739039 7.920085889 0.954178182 0.873146854 0.150066921 0.107529497 0.474344791 42.81227711 0.016622668 0.033291865 2.07E-06 5.684739039 -0.081031328 YIQHTYR ddPTM_HeLa_CUDC101_4h_R1 1 YIQHTYR 7 0 J3KTF8;J3QQX2;P52565;J3KRY1;P52565-2 J3KTF8 ARHGDIA Rho GDP-dissociation inhibitor 1 0 0 107.32 0.00055655 0 6956.8 3101 2543 4789 3034.7 3681.2 3022 2384.1 2515.7 1491.9 FALSE FALSE TRUE 6141.33445 3196.538134 2680.482272 4984.31612 2810.836227 3610.987243 3138.559552 2655.496307 2412.001781 1483.026112 4.141083153 2.155415948 1.807441049 3.36090921 1.895338324 2.434877723 2.116321167 1.790593089 1.62640547 1 10.53432828 YIQPWESEFIDSQR ddPTM_HeLa_CUDC101_4h_R1 2 YIQPWESEFIDSQR 14 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 0 ; ; 165.51 9.45E-05 10243000 1865.3 1448.75 1262.62 1174.96 1724.56 1528.9 1248.46 1075.76 1418.49 1604.94 FALSE FALSE TRUE 1646.652362 1493.38427 1330.881056 1222.879947 1597.342645 1499.73878 1296.61352 1198.22017 1360.019242 1595.393746 1.032129132 0.936060001 0.834202253 0.76650667 1.001221579 0.940043036 0.812723206 0.75104981 0.852466199 1 10.63969681 -7.006625366 3.50286614 1.014786213 0.856743791 0.18651431 0.087575318 0.14702344 3.845691023 0.012321258 0.015873271 9.85E-08 7.006625366 -0.158042422 SSQPSPTAVPAS(ph)DSPPTKQEVK ddPTM_HeLa_CUDC101_4h_R1 1 SSQPSPTAVPASDSPPTKQEVK 22 1 Q3KQU3-4;Q3KQU3;Q3KQU3-2;C9JIR3;E9PLH3 Q3KQU3-4 MAP7D1 MAP7 domain-containing protein 1 1 0 SSQPS(0.045)PT(0.165)AVPAS(0.636)DS(0.12)PPT(0.033)KQEVK 80.56 0.00055667 31628000 2039.3 1847.9 1710.5 1735.4 1586.1 1623.7 1517.4 1859.3 1673.1 1721.3 TRUE FALSE FALSE 1800.256345 1904.831609 1802.974804 1806.177113 1469.096563 1592.730628 1575.926626 2070.955196 1604.13411 1711.061631 1.052128288 1.113245469 1.053717044 1.055588577 0.858587754 0.930843518 0.921022713 1.210333491 0.937508083 1 10.74067601 SSS(ph)CGSGGGGISPK ddPTM_HeLa_CUDC101_4h_R1 1 SSSCGSGGGGISPK 14 0 F5H375;F5GWH4;Q96EP1-2;Q96EP1-4;Q96EP1 F5H375 CHFR E3 ubiquitin-protein ligase CHFR 1 0 S(0.003)S(0.003)S(0.995)CGSGGGGISPK 155.14 9.27E-05 8691000 1606.8 1412.1 1432.7 1839.3 1539 1605.3 1530.7 1394.2 1733.1 1634.7 TRUE FALSE FALSE 1418.45334 1455.605127 1510.156096 1914.314604 1425.471036 1574.681577 1589.739612 1552.910092 1661.660884 1624.976732 0.872906862 0.895769828 0.929340135 1.178056625 0.877225506 0.969048692 0.978315308 0.955650664 1.022575186 1 10.66620334 YISLIYTNYEAGKDDYVK ddPTM_HeLa_CUDC101_4h_R1 2 YISLIYTNYEAGKDDYVK 18 1 P09211 P09211 GSTP1 Glutathione S-transferase P 0 0 ; ; 144.73 1.45E-05 15688000 1008.254 981.34 1096.8 1053.3 1297.6 935.04 946.59 929.81 1123.1 1011.6 FALSE FALSE TRUE 890.0679945 1011.573922 1156.096326 1096.258127 1201.878633 917.2056699 983.1002934 1035.655812 1076.805343 1005.582958 0.885126371 1.005957702 1.149677723 1.090171743 1.195205849 0.912113379 0.977642158 1.02990589 1.07082696 1 9.97381639 -7.002498317 24.95041279 0.945742954 1.05812162 0.080519003 0.088914284 101.2292448 1010980.441 0.014307901 0.01862821 9.94E-08 7.002498317 0.112378666 YISPDQLADLYK ddPTM_HeLa_CUDC101_4h_R1 2 YISPDQLADLYK 12 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 0 0 ; ; 174.84 2.94E-06 92764000 4788.2 3265.1 3157.3 3741.9 4454.7 4098.1 3583.4 3866 3172.6 4044.1 FALSE FALSE TRUE 4226.934454 3365.693861 3327.993188 3894.510856 4126.085656 4019.93557 3721.612938 4306.089813 3041.824085 4020.045513 1.051464328 0.8372278 0.827849629 0.968772827 1.026377846 0.999972651 0.925763882 1.071154493 0.756664091 1 11.97299612 YITDWQNVFR ddPTM_HeLa_CUDC101_4h_R1 2 YITDWQNVFR 10 0 A0A024QZ42;O75340-2;O75340 A0A024QZ42 PDCD6 Programmed cell death protein 6 0 0 ; ; 170.5 1.89E-06 40083000 2969.3 2051.71 2145.9 2159.44 2506.1 2625 2263.91 1763.01 1941.97 2189.91 FALSE FALSE TRUE 2621.243155 2114.920753 2261.913845 2247.511297 2321.229996 2574.932499 2351.229767 1963.703932 1861.921175 2176.884318 1.204126068 0.971535665 1.039060196 1.032444066 1.066308382 1.182852243 1.080089441 0.902070871 0.855314708 1 11.08804903 -7.234321961 24.98774513 1.096392893 1.047070665 0 0.112215096 1941.366229 1788901.926 0.016745037 0.020504372 5.83E-08 7.234321961 -0.049322228 YK(ac)AEDEVQR ddPTM_HeLa_CUDC101_4h_R1 2 YKAEDEVQR 9 1 A0A0G2JIW1;P0DMV9;P0DMV8;P0DMV8-2;V9GZ37;Q53FA3;P34931 A0A0G2JIW1;Q53FA3 HSPA1B;HSPA1A;HSPA1L Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1-like 0 1 ; YK(1)AEDEVQR;YK(1)AEDEVQR 154.85 0.0016147 23888000 12951.3 5342.2 5676.8 4870.9 12609.5 10777.5 12344.9 9909.7 10898.9 8024.8 FALSE TRUE FALSE 11433.16825 5506.78685 5983.704979 5069.556356 11679.32231 10571.93714 12821.04693 11037.78019 10449.64273 7977.068133 1.433254431 0.690327168 0.75011331 0.635516241 1.464112141 1.325291068 1.607237987 1.383688845 1.309960321 1 12.96164288 YK(ac)PESEELTAER ddPTM_HeLa_CUDC101_4h_R1 2 YKPESEELTAER 12 1 P07237;H7BZ94;H0Y3Z3;I3L398 P07237 P4HB Protein disulfide-isomerase 0 1 ; YK(1)PESEELTAER;YK(1)PESEELTAER 138.42 0.00032765 3968900 993.3 838.67 775.33 1218.14 2289.95 2028.76 2173.54 1594.91 2508.69 2946.17 FALSE TRUE FALSE 876.8668797 864.5084286 817.246685 1267.821014 2121.024951 1990.064783 2257.374166 1776.468108 2405.280736 2928.64605 0.29941033 0.295190478 0.279052733 0.432903462 0.724233968 0.679517002 0.770791051 0.60658341 0.821294446 1 11.51601813 -9.448096067 1.208158188 0.997242698 0.494380407 0.426254595 0.181364432 0.338120446 0.890304757 0.139013812 0.035375458 3.56E-10 9.448096067 -0.50286229 YKDDDDDQLFYTR ddPTM_HeLa_CUDC101_4h_R1 3 YKDDDDDQLFYTR 13 1 O60568;H7C2V1 O60568 PLOD3 "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3" 0 0 ;; ;; 140.01 0.00093927 84622000 15806.6 12495.5 12839.6 12058.7 14333.8 13512.6 12142.6 12674.7 13455.4 12021.5 FALSE FALSE TRUE 13953.77431 12880.47154 13533.74761 12550.50591 13276.42413 13254.86967 12610.94415 14117.53662 12900.76272 11949.99558 1.16768029 1.077864126 1.1325316 1.050251929 1.110998246 1.109194524 1.055309524 1.181384254 1.079562133 1 13.54472246 -9.521470794 1.269058908 0.999838919 1.11355117 0.202163228 0.047030716 0.294041368 0.845888021 0.028887601 0.006892536 3.01E-10 9.521470794 0.113712251 SSS(ph)FSLPSR ddPTM_HeLa_CUDC101_4h_R1 1 SSSFSLPSR 9 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 0 SS(0.001)S(0.681)FS(0.317)LPSR 140.78 0.0017597 38381000 2072 1778 1576.5 1567 1851.2 2064.8 1740.2 2064.4 2042.5 1800.2 TRUE FALSE FALSE 1829.123301 1832.778073 1661.730359 1630.909033 1714.640664 2025.41738 1807.320097 2299.402951 1958.307285 1789.49233 1.022146488 1.024188839 0.928604348 0.911380846 0.958171564 1.131839095 1.009962472 1.284947084 1.094336786 1 10.80533465 YKDLDEDELLGNLSETELK ddPTM_HeLa_CUDC101_4h_R1 2 YKDLDEDELLGNLSETELK 19 1 Q9NYL9;H0YNU8 Q9NYL9 TMOD3 Tropomodulin-3 0 0 ; ; 144.17 6.44E-05 47876000 7099.9 6332.2 5310.8 5921.4 6796.4 5822.2 6367 6516.9 6421.4 6529.3 FALSE FALSE TRUE 6267.660485 6527.287576 5597.917912 6162.900286 6295.043112 5711.151235 6612.577323 7258.757554 6156.707174 6490.463433 0.965672259 1.005673577 0.862483545 0.949531624 0.969891161 0.879929653 1.018814356 1.118372768 0.948577438 1 12.66410578 -4.379210496 3.712545433 0.966941602 1.119285023 0.529067828 0.04709816 0.157481517 3.443348785 0.006716276 0.051267957 4.18E-05 4.379210496 0.152343421 SSS(ph)MSSLTGAYTSGIPSSSR ddPTM_HeLa_CUDC101_4h_R1 2 SSSMSSLTGAYTSGIPSSSR 20 0 A8CG34-2;A8CG34 A8CG34-2 POM121C Nuclear envelope pore membrane protein POM 121C 1 0 S(0.029)S(0.029)S(0.937)MS(0.002)S(0.003)LT(0.001)GAYTSGIPSSSR;S(0.037)S(0.037)S(0.922)MS(0.005)SLTGAYTSGIPSSSR ; 119.51 2.56E-05 12620600 2011.14 2265.97 1660.64 1717.7 2190.97 2072.7 2097.63 1516.6 2017.46 2020.69 TRUE FALSE FALSE 1775.397218 2335.78185 1750.419222 1787.755231 2029.346508 2033.166701 2178.536292 1689.243614 1934.299445 2008.670846 0.883866673 1.162849481 0.871431586 0.890019006 1.010293206 1.012195057 1.084566093 0.840975821 0.962974819 1 10.97202546 SSS(ph)PELVTHLK ddPTM_HeLa_CUDC101_4h_R1 3 SSSPELVTHLK 11 0 E9PNR6;H0YE29;Q07960 E9PNR6 ARHGAP1 Rho GTPase-activating protein 1 1 0 S(0.028)S(0.028)S(0.881)PELVT(0.063)HLK;S(0.002)S(0.002)S(0.996)PELVT(0.001)HLK;S(0.076)S(0.076)S(0.836)PELVT(0.011)HLK ;; 207.34 2.45E-23 396350000 16887.8 14832.1 14637.5 13983.7 16273.8 14204.7 14236.6 13529.9 14808.8 14962 TRUE FALSE FALSE 14908.23768 15289.05942 15428.84753 14554.01573 15073.3142 13933.76901 14785.71043 15070.08913 14198.375 14873.00536 1.002368877 1.027973772 1.037372552 0.978552443 1.013467946 0.936849593 0.994130646 1.013251106 0.954640616 1 13.86040858 YKLDEDEDEDDADLSK ddPTM_HeLa_CUDC101_4h_R1 1 YKLDEDEDEDDADLSK 16 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 0 0 142.39 0.00036948 50876000 5063.2 4154.2 4389 4240.2 3568 4398.8 4160.4 3869.7 5418 6193.7 FALSE FALSE TRUE 4469.699371 4282.185978 4626.282616 4413.133684 3304.795748 4314.900219 4320.868022 4310.211006 5194.667747 6156.859597 0.725970651 0.695514639 0.751402975 0.716783226 0.536766463 0.700828101 0.701797394 0.700066477 0.843720352 1 12.58797895 -9.115867731 0.439941567 1.073649836 0.669158707 0.606243263 0.070721674 0.519566727 0.145403921 0.094833299 0.016977211 7.66E-10 9.115867731 -0.404491129 SST(ph)PEMPAVSAFFSLAALAEVAAMENVHR ddPTM_HeLa_CUDC101_4h_R1 1 SSTPEMPAVSAFFSLAALAEVAAMENVHR 29 0 C9JA69;Q8WY36-2;Q8WY36;H7C1Q0 C9JA69;H7C1Q0 BBX HMG box transcription factor BBX 1 0 S(0.175)S(0.175)T(0.629)PEMPAVS(0.018)AFFS(0.003)LAALAEVAAMENVHR 53.728 0.0023753 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 YKPLNTTPNATK(ac)EIK ddPTM_HeLa_CUDC101_4h_R1 2 YKPLNTTPNATKEIK 15 2 Q96QC0 Q96QC0 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 0 1 ; YKPLNTTPNATK(1)EIK;YKPLNTTPNATK(1)EIK 189.8 1.57E-11 4055600 2228.2 3391.6 3075.3 2739.1 2445.3 2167.37 1931.89 1517.97 2903.6 3775.3 FALSE TRUE FALSE 1967.013774 3496.091176 3241.56002 2850.812337 2264.915091 2126.031028 2006.403644 1690.769569 2783.912379 3752.844348 0.52413945 0.93158438 0.863760849 0.759640442 0.603519592 0.566511912 0.534635455 0.450530161 0.741813974 1 11.87376874 -13.52287875 0.276445318 3.637406107 0.609368026 0.172970394 0.163525393 35.74930237 0.481576785 52.18615001 0.079580705 3.00E-14 13.52287875 -3.028038082 YKPVCNQVECHPYFNQR ddPTM_HeLa_CUDC101_4h_R1 2 YKPVCNQVECHPYFNQR 17 1 B4DK69;P52895;S4R3P0;Q04828;H0Y804 B4DK69;Q04828 AKR1C2;AKR1C1 Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C1 0 0 ; ; 97.904 0.0022169 186692000 6928.8 6436.7 6670 6510.9 6738.4 4713.7 5978.6 5778.8 6275.7 915.31 FALSE FALSE TRUE 6116.616567 6635.007098 7030.600376 6776.442645 6241.321657 4623.794026 6209.196605 6436.635233 6017.01299 909.8656954 6.722548831 7.292292842 7.727074898 7.447739462 6.859607619 5.081842353 6.824300153 7.074269605 6.613078194 1 9.829509796 -9.053437883 0.711359449 0.73293483 6.919004067 0.04373311 1.838944882 0.184339266 0.160616281 0.655769352 0.170208229 8.84E-10 9.053437883 6.186069237 YKPVCNQVECHPYFNR ddPTM_HeLa_CUDC101_4h_R1 2 YKPVCNQVECHPYFNR 16 1 A0A0A0MSS8;P42330;S4R3Z2;P42330-2 A0A0A0MSS8 AKR1C3 Aldo-keto reductase family 1 member C3 0 0 ; ; 133.48 0.0002465 149177000 6653.9 6579.9 6336 6830.1 6392.3 6058.1 5864.7 6444.7 6431.3 1399.81 FALSE FALSE TRUE 5873.939929 6782.61892 6678.543325 7108.661 5920.752764 5942.551836 6090.903444 7178.338598 6166.199092 1391.483868 4.221349643 4.874378407 4.799583725 5.108690919 4.254992028 4.270658089 4.377272051 5.158765231 4.431383816 1 10.44240847 -8.925669728 0.605648889 0.749010406 4.71070984 0.068012772 1.095115472 0.163853563 0.104254348 0.338680582 0.089359512 1.19E-09 8.925669728 3.961699435 YKPVTNQVECHPYLTQEK ddPTM_HeLa_CUDC101_4h_R1 1 YKPVTNQVECHPYLTQEK 18 1 O60218;C9JRZ8;C9JRZ8-2 O60218 AKR1B10;AKR1B15 Aldo-keto reductase family 1 member B10;Aldo-keto reductase family 1 member B15 0 0 55.912 0.029985 32248000 1555.2 1252.2 852.44 1129.5 1034 1073.7 859.3 1232.3 1072.8 1405.2 FALSE FALSE TRUE 1372.901814 1290.778798 898.5254849 1175.565892 957.72388 1053.220961 892.4434888 1372.580051 1028.57873 1396.841808 0.982861342 0.924069419 0.643255006 0.841588421 0.685635177 0.754001602 0.6389009 0.982630992 0.736360212 1 10.44795293 -6.930013152 5.659922202 0.990152585 0.753148038 0.184672915 0.124496033 0.095771651 5.619160814 0.013796925 0.018180725 1.17E-07 6.930013152 -0.237004546 YLAADK(ac)DGNVTCER ddPTM_HeLa_CUDC101_4h_R1 2 YLAADKDGNVTCER 14 1 Q16658 Q16658 FSCN1 Fascin 0 1 ; YLAADK(1)DGNVTCER;YLAADK(1)DGNVTCER 171.99 2.92E-07 6645000 3789.9 1739.13 1305.7 1526.3 3849.8 2851.6 4151.1 2604.1 3417.9 957.36 FALSE TRUE FALSE 3345.653667 1792.710534 1376.290092 1588.549111 3565.807924 2797.210481 4311.209318 2900.540218 3277.012715 951.6655801 3.515577044 1.88376103 1.446190889 1.669230394 3.746912779 2.939278818 4.530172581 3.047856598 3.443449867 1 9.894310882 -9.464208373 1.007682266 0.912516968 2.887031533 0 1.186646631 0.572199025 0.961610608 0.868706826 0.179200052 3.43E-10 9.464208373 1.974514565 YLAADKDGNVTCER ddPTM_HeLa_CUDC101_4h_R1 2 YLAADKDGNVTCER 14 1 Q16658 Q16658 FSCN1 Fascin 0 0 ; ; 120.6 0.0017747 62159000 5410.1 5238.3 5778.7 4859.5 5090.1 4936.6 4975.9 5068.5 5077.8 2781.3 FALSE FALSE TRUE 4775.936279 5399.685814 6091.114002 5057.691415 4714.613464 4842.44258 5167.82213 5645.477552 4868.490935 2764.756704 1.72743456 1.953041946 2.203128396 1.829344118 1.705254375 1.751489588 1.8691779 2.041943707 1.76091116 1 11.43293681 -8.72128469 0.65433637 0.989849389 1.901781447 0.204560029 0.268413655 0.233394784 0.192311862 0.109001103 0.038226176 1.90E-09 8.72128469 0.911932058 YLAEFATGNDR ddPTM_HeLa_CUDC101_4h_R1 1 YLAEFATGNDR 11 0 P62258;P62258-2;K7EM20 P62258 YWHAE 14-3-3 protein epsilon 0 0 137.46 0.0085823 13841000 883.67 758.86 930.35 821.51 767.07 863.2 679.89 578.23 891.31 902.76 FALSE FALSE TRUE 780.0875422 782.2395771 980.6475352 855.0147287 710.4847743 846.7358982 706.113585 644.0533659 854.5698245 897.3903434 0.869284529 0.871682633 1.092777009 0.952779061 0.791723222 0.94355361 0.786852221 0.717695895 0.952283285 1 9.809591849 -3.687852782 0.655022437 0.942691978 0.339770115 0.489792063 0.076278439 4.17315364 0.733017546 0.01431627 2.235908995 0.000205186 3.687852782 -0.602921863 YLAEFATGNDRK ddPTM_HeLa_CUDC101_4h_R1 2 YLAEFATGNDRK 12 1 P62258;P62258-2;K7EM20 P62258 YWHAE 14-3-3 protein epsilon 0 0 ; ; 138.63 0.001351 127613000 3804.8 3940.7 3955.2 4161.1 5579.8 4242.5 4218.1 3947.3 4688.7 4142.7 FALSE FALSE TRUE 3358.807112 4062.108296 4169.030076 4330.807644 5168.189271 4161.581381 4380.79353 4396.644676 4495.429801 4118.059036 0.815628694 0.986413323 1.012377443 1.05166235 1.255006115 1.010568655 1.063800565 1.067649744 1.091638017 1 12.0077488 -6.640353691 1.977869881 0.913828943 1.091679524 0.181011196 0.093436511 0.225611802 1.796925486 0.015128378 0.022746176 2.29E-07 6.640353691 0.177850581 YLAEKYEWDVAEAR ddPTM_HeLa_CUDC101_4h_R1 2 YLAEKYEWDVAEAR 14 1 P13639 P13639 EEF2 Elongation factor 2 0 0 ; ; 117.27 0.0022579 49489000 3146.9 3624.9 3810.5 4314.6 6093.1 4240.6 4523.1 5916.3 4535.8 3446 FALSE FALSE TRUE 2778.025152 3736.578872 4016.507156 4490.568037 5643.624152 4159.71762 4697.557482 6589.787677 4348.832404 3425.503039 0.810983123 1.090811723 1.172530607 1.310922217 1.647531498 1.214337741 1.371348216 1.923743054 1.269545627 1 11.74210015 -6.416330604 1.21441784 0.912028253 1.515090638 0.48862101 0.215591732 0.193780405 0.567248223 0.032258523 0.058431197 3.83E-07 6.416330604 0.603062385 YLAEVAAGDDK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 YLAEVAAGDDKK 12 1 P63104;E7EX29;B7Z2E6;H0YB80;B0AZS6;P63104-2 P63104 YWHAZ 14-3-3 protein zeta/delta 0 1 YLAEVAAGDDK(1)K 134.98 0.00038313 4895900 4650.9 2030.6 2482.3 1541.7 5057.4 3793.9 4877 3772.9 4708.8 3760.1 FALSE TRUE FALSE 4105.728552 2093.160379 2616.500647 1604.57719 4684.325678 3721.537679 5065.107524 4202.391685 4514.701271 3737.734758 1.098453694 0.560007736 0.700023093 0.429291347 1.253252566 0.995666605 1.355127598 1.124315115 1.20787096 1 11.86794848 YLAEVAAGDDKK ddPTM_HeLa_CUDC101_4h_R1 2 YLAEVAAGDDKK 12 1 P63104;E7EX29;B7Z2E6;H0YB80;B0AZS6;P63104-2 P63104 YWHAZ 14-3-3 protein zeta/delta 0 0 ; ; 128.36 0.0020423 115228000 4167.5 3869.5 4474.3 3916.1 5083.2 3974.6 3684.4 3777.8 4955.3 5317.1 FALSE FALSE TRUE 3678.991968 3988.714709 4716.194192 4075.815485 4708.222463 3898.791127 3826.508542 4207.849482 4751.040437 5285.473653 0.696057195 0.754656057 0.892293577 0.771135333 0.890785343 0.737642713 0.723967007 0.796115875 0.89888641 1 12.36781705 -9.443014635 1.145668727 1.00139702 0.776993694 0.467018429 0.068215112 0.262912729 0.611151316 0.047266428 0.011493662 3.61E-10 9.443014635 -0.224403327 YLAEVACGDDR ddPTM_HeLa_CUDC101_4h_R1 2 YLAEVACGDDR 11 0 P27348;E9PG15 P27348 YWHAQ 14-3-3 protein theta 0 0 ; ; 212.03 7.77E-23 107043000 3370.6 3521.1 3420.1 3333.8 4173.5 3116.4 3318.2 3738.1 3764.9 1695.53 FALSE FALSE TRUE 2975.503377 3629.580917 3605.000951 3469.766774 3865.62922 3056.959862 3446.184086 4163.630194 3609.709228 1685.444912 1.765411231 2.153485345 2.138901678 2.058665192 2.293536378 1.813740598 2.044673226 2.470344871 2.14169517 1 10.71891376 -8.411751725 0.512111681 0.953755848 2.171712061 0 0.386576155 0.241334969 0.133813982 0.132213032 0.054452209 3.87E-09 8.411751725 1.217956213 YLAEVACGDDRK ddPTM_HeLa_CUDC101_4h_R1 1 YLAEVACGDDRK 12 1 P27348;E9PG15 P27348 YWHAQ 14-3-3 protein theta 0 0 89.356 0.023357 18020000 683.82 606.73 727.25 977.89 942.94 876.06 802.2 854.04 849.21 1453 FALSE FALSE TRUE 603.6636562 625.4226321 766.5673348 1017.772581 873.3811948 859.3506151 833.1411227 951.2604615 814.2052044 1444.357491 0.417946152 0.433010966 0.530732412 0.704654206 0.60468492 0.594970857 0.576824732 0.658604582 0.563714461 1 10.49621215 -9.39374723 1.109728902 1.000907562 0.555449914 0 0.156436462 0.201989694 0.443538607 0.069612155 0.017645601 4.04E-10 9.39374723 -0.445457648 YLAEVASGEK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 YLAEVASGEKK 11 1 Q04917;A2IDB2 Q04917 YWHAH 14-3-3 protein eta 0 1 YLAEVASGEK(1)K 188.99 7.51E-06 561010 685.92 448.23 307.76 333.75 671.22 710.52 1061 682.18 654.73 343.87 FALSE TRUE FALSE 605.5174974 462.039435 324.3984365 347.3617676 621.7054379 696.9680148 1101.923125 759.8366137 627.7417523 341.8246459 1.771427264 1.351685551 0.949020032 1.01619872 1.818784705 2.038963612 3.223650309 2.222884227 1.836443802 1 8.41711261 -5.201520313 2.092450182 1.32136083 2.706285808 0.652580757 0.390324058 0.146455401 1.228025597 0.058902509 0.190673399 6.29E-06 5.201520313 1.384924977 YLAEVATGDDK ddPTM_HeLa_CUDC101_4h_R1 1 YLAEVATGDDK 11 0 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 0 130.98 0.00019195 0 1178.6 893.9 923.79 875.77 810 867 826.48 839.01 1023.8 1118 FALSE FALSE TRUE 1040.446295 921.4399995 973.7328817 911.487686 750.2479137 850.4634195 858.3576105 934.519507 981.5985307 1111.350086 0.936200309 0.829117675 0.876171149 0.820162519 0.675077928 0.765252489 0.772355733 0.8408867 0.883248711 1 10.11809764 -7.076075357 0.753739034 0.98527805 0.76550386 0.577831024 0.056609201 0.192674408 0.223883706 0.01166036 0.015653326 8.39E-08 7.076075357 -0.21977419 YLAEVATGDDK(ac)KR ddPTM_HeLa_CUDC101_4h_R1 1 YLAEVATGDDKKR 13 2 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 1 YLAEVATGDDK(0.996)K(0.004)R 139.48 0.001498 5256600 1857.5 781.63 572.23 431.51 1825.8 1373.1 1402.9 1421.3 1094.2 756.15 FALSE TRUE FALSE 1639.766666 805.7110938 603.1664847 449.1088429 1691.114372 1346.910405 1457.010323 1583.095047 1049.096613 751.6523862 2.181549205 1.071919824 0.802454028 0.5974954 2.249862307 1.791932587 1.938409762 2.106153158 1.395720458 1 9.553921808 -1.000000002 0.037244637 7.01E-10 4.232176013 0.128766017 0.545462052 1745.814388 5.013262683 164.3389039 486.419079 0.1 1.000000002 4.232176012 YLAEVATGDDKKR ddPTM_HeLa_CUDC101_4h_R1 1 YLAEVATGDDKKR 13 2 P31947-2;P31947 P31947-2 SFN 14-3-3 protein sigma 0 0 60.08 0.037402 15228000 2706.9 2364.5 2428.3 2268.6 3588 2842.9 2600.3 2444.4 2405.3 2483.2 FALSE FALSE TRUE 2389.601285 2437.347442 2559.581243 2361.123314 3323.320388 2788.676419 2700.594442 2722.660615 2306.152516 2468.429816 0.968065314 0.987408038 1.036926886 0.956528437 1.346329706 1.129736969 1.094053566 1.102992922 0.934258896 1 11.26937791 -5.812245042 24.99999991 0.987335338 1.160225202 0.627144743 0.070693766 50.66473375 24930.48709 0.00977959 0.017727031 1.54E-06 5.812245042 0.172889864 YLAEVATGEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 YLAEVATGEKR 11 1 P61981 P61981 YWHAG "14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed" 0 1 ; YLAEVATGEK(1)R;YLAEVATGEK(1)R 133.75 0.00070232 2951900 911.92 648.12 676.59 664.51 1633.07 981.48 1309.78 1079.39 1014.49 779.63 FALSE TRUE FALSE 805.02612 668.087809 713.168502 691.6115901 1512.60168 962.7599043 1360.298653 1202.263395 972.6722928 774.9927261 1.03875313 0.862056877 0.920226059 0.892410428 1.951762421 1.242282504 1.755240543 1.551322166 1.255072803 1 9.598038959 -5.776191362 24.9940028 0.989664944 1.607096164 0.714531608 0.195054774 77.66120048 131579.8504 0.023536188 0.04279257 1.67E-06 5.776191362 0.61743122 SST(ph)PLHS(ph)PSPIR ddPTM_HeLa_CUDC101_4h_R1 1 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 2 0 S(0.103)S(0.13)T(0.767)PLHS(0.854)PS(0.146)PIR 85.988 0.033633 74017000 6674.9 4290.8 3915.2 3921.1 6406.7 5433.1 5025.3 4820 5615 4846.6 TRUE FALSE FALSE 5892.47834 4422.994462 4126.867555 4081.019406 5934.090505 5329.47267 5219.127504 5368.689317 5383.547323 4817.772208 1.22307118 0.91805803 0.856592503 0.847076041 1.231708402 1.106211012 1.083307238 1.114351008 1.117435008 1 12.23415047 YLDEDTIYHLQPSGR ddPTM_HeLa_CUDC101_4h_R1 2 YLDEDTIYHLQPSGR 15 0 P31153-2;P31153 P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 0 0 ; ; 187.16 6.17E-11 49084000 8729.4 7459.5 6736.3 7066.8 8204.4 7796.6 7533 7850.9 8249.6 8230.2 FALSE FALSE TRUE 7706.152965 7689.318353 7100.484754 7355.014649 7599.177757 7647.892845 7823.550333 8744.614722 7909.547996 8181.246404 0.941928966 0.939871258 0.867897678 0.899009061 0.928853304 0.934807787 0.956278536 1.06886094 0.966790096 1 12.99810494 -4.262598517 5.647212747 0.951615309 1.072704805 0.506872316 0.036579395 0.121238746 15.8613732 0.006462041 0.05640021 5.46E-05 4.262598517 0.121089496 YLDPEYIDR ddPTM_HeLa_CUDC101_4h_R1 2 YLDPEYIDR 9 0 X6RA56;X6RCK5;A0A0A0MRV8;X6RLR1;O75935-3;O75935-2;O75935 X6RA56 DCTN3 Dynactin subunit 3 0 0 ; ; 166.52 8.68E-05 18233000 7317.9 6703.4 6462.5 6762.2 7083.1 7008.4 6050.6 6421.5 6696.5 7102.1 FALSE FALSE TRUE 6460.106855 6909.923809 6811.882298 7037.991745 6560.593825 6874.726447 6283.973669 7152.497603 6420.467436 7059.856393 0.915047912 0.978762658 0.964875476 0.996902961 0.929281484 0.973777095 0.890099362 1.013122251 0.90943315 1 12.78542312 -9.662040402 1.520374358 0.999912208 0.950704126 0 0.045537192 0.502584499 2.096460855 0.024620008 0.005574141 2.18E-10 9.662040402 -0.049208082 ST(ph)FY(ph)DIK ddPTM_HeLa_CUDC101_4h_R1 1 STFYDIK 7 0 I3L2A8;Q6NT04-2;Q6NT04 I3L2A8 TIGD7 Tigger transposable element-derived protein 7 2 0 S(0.111)T(0.89)FY(0.999)DIK 62.582 0.002688 0 393.2 593.96 130.08 336.5 272.59 370.06 291.11 269.61 428.07 307.95 TRUE FALSE FALSE 347.1096921 612.2592036 137.1125183 350.2239245 252.4815788 363.0017221 302.3382102 300.3013126 410.4247734 306.1182997 1.13390703 2.000073841 0.447906964 1.144080327 0.824784337 1.185821698 0.98765154 0.980997585 1.340739099 1 8.257945481 STAQQELDGKPAS(ph)PTPVIVASHTANK ddPTM_HeLa_CUDC101_4h_R1 1 STAQQELDGKPASPTPVIVASHTANK 26 1 H0YAC7;P35606-2;P35606 H0YAC7 COPB2 Coatomer subunit beta 1 0 STAQQELDGKPAS(0.989)PT(0.011)PVIVASHTANK 106.09 1.12E-07 12602000 2764.8 1752.3 1894.2 1956.2 2211.9 1887.1 1730.8 1434.2 2572.2 2648.5 TRUE FALSE FALSE 2440.714335 1806.286286 1996.606182 2035.982291 2048.732544 1851.106712 1797.557536 1597.463531 2466.172827 2632.746604 0.927060102 0.686084366 0.758373851 0.773330137 0.778173084 0.703108574 0.682768912 0.606766913 0.936730038 1 11.36235296 STGS(ph)PTQETQAPFIAK ddPTM_HeLa_CUDC101_4h_R1 4 STGSPTQETQAPFIAK 16 0 H0Y704;O15231-2;O15231-3 H0Y704 ZNF185 Zinc finger protein 185 1 0 S(0.001)T(0.001)GS(0.985)PT(0.013)QETQAPFIAK;S(0.124)T(0.124)GS(0.715)PT(0.038)QETQAPFIAK;S(0.241)T(0.241)GS(0.51)PT(0.007)QETQAPFIAK;S(0.378)T(0.016)GS(0.57)PT(0.035)QETQAPFIAK ;;; 181.81 1.24E-10 132727000 14129.9 13109.3 12278.1 11336.6 13654.8 13394.6 11921.4 12435.3 12226.3 12600.4 TRUE FALSE FALSE 12473.61454 13513.18199 12941.89123 11798.95555 12647.51261 13139.12032 12381.21239 13850.88429 11722.32674 12525.45226 0.995861409 1.07885781 1.033247419 0.941998365 1.009744985 1.048993685 0.988484259 1.105819095 0.935880517 1 13.61257508 STS(ph)T(ph)PTSPGPR ddPTM_HeLa_CUDC101_4h_R1 1 STSTPTSPGPR 11 0 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3;H3BRB0;A0A0C4DGL7;H3BUF6 Q8WWM7-6;H3BUF6 ATXN2L Ataxin-2-like protein 2 0 S(0.015)T(0.022)S(0.965)T(0.802)PT(0.12)S(0.077)PGPR 113.67 0.021933 93803000 6621.5 5350.7 5275.9 4709.3 6294.1 5340.4 5353.5 4775.1 5627.6 5247.9 TRUE FALSE FALSE 5845.337808 5515.548725 5561.131113 4901.365609 5829.796783 5238.540768 5559.986288 5318.678082 5395.627946 5216.685257 1.120508047 1.057289917 1.066027724 0.939555554 1.117528947 1.00418954 1.06580827 1.019551271 1.034301991 1 12.34891768 YLHDESGLNRR ddPTM_HeLa_CUDC101_4h_R1 4 YLHDESGLNRR 11 1 B5MCX3;Q15019;Q15019-3;Q15019-2;C9J2Q4;C9IY94;C9J938;H7C310;C9JB25 B5MCX3 2-Sep Septin-2 0 0 ;;; ;;; 109.44 0.004888 41431400 6092.6 5136.6 5168.8 4849.2 6652.9 5558.3 5830.7 6143 6186.4 5293.1 FALSE FALSE TRUE 5378.434664 5294.852558 5448.240963 5046.971336 6162.128821 5452.284688 6055.592052 6842.294289 5931.393974 5261.616406 1.022201972 1.006316719 1.035469054 0.959205489 1.171147485 1.036237587 1.150899569 1.300416785 1.12729502 1 12.36129036 -1 0.535151127 1.009135954 12.7756526 0.619643234 0.060992719 34.497446 0.300976543 0.00815335 466.0465873 0.1 1 11.76651665 STS(ph)TPNVHMVSTTLPVDSR ddPTM_HeLa_CUDC101_4h_R1 4 STSTPNVHMVSTTLPVDSR 19 0 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 0 S(0.001)TS(0.948)T(0.05)PNVHMVSTTLPVDSR;S(0.215)T(0.215)S(0.429)T(0.141)PNVHMVSTTLPVDSR;S(0.114)T(0.114)S(0.624)T(0.148)PNVHMVSTTLPVDSR;S(0.002)T(0.011)S(0.89)T(0.097)PNVHMVSTTLPVDSR ;;; 266.28 2.80E-71 223476000 8060.29 6050.32 5557.92 5385.05 7822.23 6769.96 6599.08 6555.22 6705.53 5914.84 TRUE FALSE FALSE 7115.475025 6236.723188 5858.397967 5604.675615 7245.199677 6640.834293 6853.608726 7301.439748 6429.125215 5879.658269 1.210185133 1.060728856 0.996384092 0.953231525 1.232248431 1.129459229 1.16564746 1.241813625 1.093452191 1 12.52151659 SVAAEGALLPQTPPS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SVAAEGALLPQTPPSPR 17 0 Q86X27-3;Q86X27;H7C2H2 Q86X27-3 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 0 SVAAEGALLPQTPPS(1)PR 212.76 6.72E-24 31133000 2039.7 2113.2 1912.9 1677.9 1841.2 2165.3 1846.1 2176.2 1997.9 1896.3 TRUE FALSE FALSE 1800.609458 2178.305187 2016.31716 1746.332015 1705.378344 2124.00051 1917.304695 2423.929811 1915.545716 1885.020723 0.95521998 1.155586865 1.069652516 0.926425897 0.904700051 1.126778334 1.017126587 1.285890272 1.016193452 1 10.88036467 SVAVS(ph)DEEEVEEEAER ddPTM_HeLa_CUDC101_4h_R1 4 SVAVSDEEEVEEEAER 16 0 Q9Y6X9-2;Q9Y6X9 Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 1 0 S(0.003)VAVS(0.997)DEEEVEEEAER;S(0.444)VAVS(0.556)DEEEVEEEAER;S(0.002)VAVS(0.998)DEEEVEEEAER;SVAVS(1)DEEEVEEEAER ;;; 210.67 1.44E-23 132423000 13239 11156.69 11737.8 10771.2 12087.3 11374 11214.4 10952.19 11973.3 11738 TRUE FALSE FALSE 11687.14449 11500.41439 12372.38097 11210.49609 11195.64396 11157.0599 11646.94316 12198.94304 11479.75551 11668.18185 1.001625158 0.985621799 1.060352086 0.960774886 0.959502012 0.956195236 0.998179777 1.045487908 0.983851267 1 13.51029216 SVEAAAELS(ph)AK ddPTM_HeLa_CUDC101_4h_R1 2 SVEAAAELSAK 11 0 P20962;F5H7R9;F5GXR3 P20962 PTMS Parathymosin 1 0 SVEAAAELS(1)AK;SVEAAAELS(1)AK ; 131.13 0.0018892 18075400 3278.4 3174.8 2964 2721.3 3891 3214.4 3580 4921.3 3377.3 3167.2 TRUE FALSE FALSE 2894.110922 3272.611825 3124.242806 2832.286376 3603.968682 3153.090676 3718.081799 5481.520899 3238.086265 3148.361354 0.919243567 1.039465124 0.992339333 0.899606512 1.144712527 1.001502153 1.180957769 1.741071079 1.028498924 1 11.62038542 YLMEEDEDAYKK ddPTM_HeLa_CUDC101_4h_R1 2 YLMEEDEDAYKK 12 1 A0A2R8Y6J3;P46777 A0A2R8Y6J3 RPL5 60S ribosomal protein L5 0 0 ; ; 177.57 3.01E-07 68213000 5339.3 4775 4570.7 4974.7 4633.3 4875.7 4509.6 4977 5187.1 4874.4 FALSE FALSE TRUE 4713.435348 4922.11209 4817.805868 5177.589768 4291.51069 4782.704146 4683.536783 5543.561562 4973.285543 4845.406852 0.972763587 1.015830505 0.994303681 1.068556249 0.885686346 0.987059352 0.96659309 1.14408588 1.026391734 1 12.24240209 -4.256857854 24.6579659 0.986921139 1.144085957 0.510525197 0.04488396 214.759672 1155796.569 0.005514462 0.058566723 5.54E-05 4.256857854 0.157164819 YLPHSAGR ddPTM_HeLa_CUDC101_4h_R1 2 YLPHSAGR 8 0 M0R0F0;M0R0R2;P46782 M0R0F0 RPS5 "40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed" 0 0 ; ; 138.83 0.0043192 35691000 18645.6 13418 11668.5 15676.7 13882 14474.3 11614 10228.3 10773.9 6066.2 FALSE FALSE TRUE 16459.99103 13831.39268 12299.33441 16316.06359 12857.95252 14198.22684 12061.95587 11392.64833 10329.79528 6030.117973 2.729630018 2.293718421 2.03965071 2.705761921 2.132288717 2.354552085 2.000285222 1.889291118 1.713033697 1 12.55797051 -9.415413265 1.102147162 0.988239915 2.304679703 0.498501637 0.338327014 0.20407403 0.437066203 0.209494567 0.051079084 3.84E-10 9.415413265 1.316439788 SVPAGLTLQS(ph)VSPQSLQGK ddPTM_HeLa_CUDC101_4h_R1 1 SVPAGLTLQSVSPQSLQGK 19 0 B4DJX4;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;Q9HAU0-5;Q9HAU0-3;H0YG48 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 0 SVPAGLTLQS(0.996)VS(0.003)PQSLQGK 129.43 2.49E-06 0 1334.4 1609 1449.9 1001.1 1635 1356.8 1342.9 1042.8 1641.3 1320.5 TRUE FALSE FALSE 1177.983655 1658.571383 1528.28598 1041.929185 1514.389307 1330.921301 1394.696103 1161.508137 1573.644919 1312.645607 0.897411798 1.26353326 1.164279202 0.793762749 1.153692435 1.013922793 1.062507729 0.884860415 1.19883456 1 10.35826175 SVS(ph)PTFLNPSDENLK ddPTM_HeLa_CUDC101_4h_R1 1 SVSPTFLNPSDENLK 15 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 0 S(0.002)VS(0.518)PT(0.332)FLNPS(0.148)DENLK 144.88 0.00033119 72587000 4111.2 3260.6 3367 3560.8 3860.4 3356.9 3342.4 3555.6 3576.9 3492 TRUE FALSE FALSE 3629.291368 3361.055221 3549.030205 3706.024815 3575.625983 3292.872725 3471.317488 3960.355132 3429.458668 3471.229429 1.045534858 0.968260753 1.022413032 1.067640411 1.030074807 0.948618578 1.000025368 1.140908492 0.98796658 1 11.76123101 SVSTTNIAGHFNDES(ph)PLGLRR ddPTM_HeLa_CUDC101_4h_R1 1 SVSTTNIAGHFNDESPLGLRR 21 1 Q92974-2;Q92974;V9GYM8;A0A5F9ZI21;Q92974-3;V9GYF5;V9GYG5;V9GZ14 Q92974-2 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 0 SVSTTNIAGHFNDES(1)PLGLRR 52.498 0.022312 8243300 666.29 546.47 410.74 527.21 587.3 626.88 482.72 364.38 653.78 528.54 TRUE FALSE FALSE 588.1884962 563.306093 432.9458468 548.7119026 543.9760491 614.9233085 501.3386721 405.8595463 626.8309117 525.3962206 1.119514137 1.072154825 0.82403685 1.044377331 1.03536346 1.170399185 0.954210656 0.772482805 1.193063229 1 9.037262012 SWVIGS(ph)PEILR ddPTM_HeLa_CUDC101_4h_R1 1 SWVIGSPEILR 11 0 Q6P0Q8;Q6P0Q8-2;A0A669KBJ4;E7ERL6 Q6P0Q8 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 0 S(0.004)WVIGS(0.996)PEILR 87.831 0.027952 57333000 2172.9 1726.5 2262.6 1936.2 2164.8 1530.6 1811.7 1771 2256.1 1947.5 TRUE FALSE FALSE 1918.195956 1779.691419 2384.923 2015.166605 2005.107017 1501.406355 1881.577876 1972.603481 2163.102603 1935.916183 0.990846594 0.919301896 1.23193505 1.040936907 1.035740614 0.775553388 0.971931477 1.018950871 1.117353438 1 10.91880078 SYLEGSS(ph)DNQLKDSESTPVDDR ddPTM_HeLa_CUDC101_4h_R1 3 SYLEGSSDNQLKDSESTPVDDR 22 1 Q9UHI6;E9PJ60 Q9UHI6 DDX20 Probable ATP-dependent RNA helicase DDX20 1 0 SYLEGS(0.18)S(0.818)DNQLKDS(0.001)ESTPVDDR;SYLEGS(0.202)S(0.798)DNQLKDSESTPVDDR;SYLEGS(0.21)S(0.788)DNQLKDS(0.001)ESTPVDDR ;; 109.42 1.05E-05 151407000 6770.77 6745.6 6643.9 5935.8 6600.2 6818.9 5852.8 5870.35 7695.7 6959 TRUE FALSE FALSE 5977.110604 6953.42394 7003.089331 6177.887581 6113.316395 6688.840844 6078.544457 6538.606915 7378.479989 6917.607559 0.864043031 1.005177568 1.012357129 0.89306708 0.883732756 0.966929793 0.878706172 0.945212179 1.066623096 1 12.75605746 SYMPS(ph)THR ddPTM_HeLa_CUDC101_4h_R1 1 SYMPSTHR 8 0 P55895 P55895 RAG2 V(D)J recombination-activating protein 2 1 0 SYMPS(0.5)T(0.5)HR 75.189 0.034481 5204100 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 SYQT(ph)ETLPMILTST(ph)S(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 SYQTETLPMILTSTSPR 17 0 A0PJX4 A0PJX4 SHISA3 Protein shisa-3 homolog 3 0 S(0.279)Y(0.195)QT(0.363)ET(0.163)LPMILT(0.414)S(0.502)T(0.55)S(0.534)PR 63.225 0.023763 40481000 3801.5 3620.7 3613.4 3329.1 3998.3 3389.5 3175.4 3093.7 3988.8 3503.1 TRUE FALSE FALSE 3355.893933 3732.249475 3808.751334 3464.875088 3703.353375 3324.850935 3297.876242 3445.874303 3824.379976 3482.263405 0.963710536 1.071788386 1.09375739 0.995006605 1.063490306 0.954795932 0.947049622 0.989550158 1.09824546 1 11.76580962 SYVTTS(ph)TR ddPTM_HeLa_CUDC101_4h_R1 1 SYVTTSTR 8 0 P08670;B0YJC4;A0A1B0GTT5;A0A1B0GVG8 P08670 VIM Vimentin 1 0 SYVTT(0.003)S(0.498)T(0.498)R 105.46 0.0064011 10050000 2109.3 2067.7 1938.5 1822.6 2113.1 1793.8 1851.1 1807.1 1955.7 1890.7 TRUE FALSE FALSE 1862.051051 2131.403386 2043.301174 1896.933506 1957.220823 1759.586254 1922.497547 2012.812959 1875.085218 1879.454032 0.990740406 1.134054544 1.087178052 1.009300293 1.04137733 0.936222022 1.022902138 1.070956206 0.997675488 1 10.87609792 T(ph)FS(ph)RS(ph)S(ph)S(ph)MK ddPTM_HeLa_CUDC101_4h_R1 1 TFSRSSSMK 9 1 P49760-2 P49760-2 CLK2 Dual specificity protein kinase CLK2 5 0 T(1)FS(1)RS(1)S(1)S(1)MK 54.343 0.0031377 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)IDSWMSIMVPK ddPTM_HeLa_CUDC101_4h_R1 1 TIDSWMSIMVPK 12 0 P07093-2;P07093;P07093-3 P07093-2 SERPINE2 Glia-derived nexin 1 0 T(0.686)IDS(0.307)WMS(0.008)IMVPK 63.292 0.0030772 0 1355.8 1164.3 1234.2 813.85 1009.7 1200.5 1197.4 1024.1 1306.4 1279.9 TRUE FALSE FALSE 1196.875179 1200.170703 1300.924585 847.0423208 935.2164426 1177.602463 1243.584119 1140.679404 1252.549639 1272.287098 0.940727279 0.943317515 1.022508668 0.665763507 0.735067143 0.925579191 0.977439857 0.89655818 0.984486631 1 10.31320854 T(ph)ISNPEVVMK ddPTM_HeLa_CUDC101_4h_R1 1 TISNPEVVMK 10 0 A8MQ02;J3KN01;P55196-3;P55196;P55196-5;Q5TIG5;P55196-2;P55196-6;P55196-1;F8W9I4;E9PFY5 A8MQ02 MLLT4 Afadin 1 0 T(0.999)IS(0.001)NPEVVMK 124.21 0.018385 8527600 1643.1 1938.9 1365.8 1546.8 1650.4 1605.2 1445.5 1360.3 1346.4 1498 TRUE FALSE FALSE 1450.498309 1998.635211 1439.639279 1609.88519 1528.65328 1574.583484 1501.253419 1515.151053 1290.900822 1489.089829 0.97408382 1.342185791 0.966791426 1.081120264 1.026568881 1.057413363 1.008168473 1.017501445 0.866905943 1 10.54021507 YLTAEAFGFK ddPTM_HeLa_CUDC101_4h_R1 2 YLTAEAFGFK 10 0 Q16658 Q16658 FSCN1 Fascin 0 0 ; ; 133.57 0.016591 749030 296.82 240.14 322.5 67.229 289.72 329.38 286.63 135.1 152.86 231.494 FALSE FALSE TRUE 262.0272095 247.5384288 339.9353255 69.97088921 268.3479328 323.0976253 297.6854151 150.4792379 146.5590461 230.1170634 1.138669187 1.075706534 1.47722781 0.304066496 1.166136613 1.404057659 1.293625995 0.653924727 0.636889086 1 7.846224154 -9.615890002 1.456064061 1.00043502 1.084497885 0.019185584 0.352026809 2.734069603 10.49456505 0.219211274 0.051472334 2.42E-10 9.615890002 0.084062865 YLTNQK(ac)NSNSK ddPTM_HeLa_CUDC101_4h_R1 2 YLTNQKNSNSK 11 1 B1AK63;Q9HAF1-2;Q9HAF1;Q9HAF1-4;Q9HAF1-3 B1AK63 MEAF6 Chromatin modification-related protein MEAF6 0 1 ; YLTNQK(1)NSNSK;YLTNQK(1)NSNSK 308.21 7.42E-114 30574000 8523.8 5687.2 4383.5 3541 3062.13 2912.96 3356.2 3422.7 7739.8 6492.8 FALSE TRUE FALSE 7524.653085 5862.415891 4620.485269 3685.417286 2836.242771 2857.400141 3485.649758 3812.326333 7420.762168 6454.180537 1.165857237 0.90831297 0.715890304 0.571012426 0.439442739 0.442720826 0.540060777 0.590675503 1.149760551 1 12.65601822 -6.676989268 1.748212765 1.078031595 0.506535536 0.939314024 0.065815108 0.067243067 0.418567423 0.013685133 0.020539741 2.10E-07 6.676989268 -0.571496059 YLTNQK(ac)NSNSK(ac)NDR ddPTM_HeLa_CUDC101_4h_R1 2 YLTNQKNSNSKNDR 14 2 B1AK63;Q9HAF1-2;Q9HAF1;Q9HAF1-4;Q9HAF1-3 B1AK63 MEAF6 Chromatin modification-related protein MEAF6 0 2 ; YLTNQK(1)NSNSK(1)NDR;YLTNQK(1)NSNSK(1)NDR 360.11 0 7069400 751.54 966.97 1055.23 1163.77 1149.61 1201.25 1412.97 981.52 177.71 353.06 FALSE TRUE FALSE 663.4456205 996.7611996 1112.278926 1211.233571 1064.805561 1178.338158 1467.468726 1093.252269 170.3847186 350.9599834 1.890373979 2.84009929 3.169247146 3.451201356 3.033979972 3.357471545 4.181299281 3.115033967 0.485481897 1 8.455162733 -7.342525432 0.644329133 1.130467359 3.581681279 0.882666189 0.377438015 0.130478727 0.118342451 0.09643916 0.108083252 4.54E-08 7.342525432 2.45121392 TKEGVMYVGAK(ac)TK ddPTM_HeLa_CUDC101_4h_R1 2 TKEGVMYVGAKTK 13 2 O76070;F8W754 O76070 SNCG Gamma-synuclein 0 1 ; TKEGVMYVGAK(1)TK;TKEGVMYVGAK(1)TK 115.68 0.0068858 3655700 5135 4813.7 4610.3 5430.2 7012.9 5780.3 6418.2 9168.9 3444 2487.1 FALSE TRUE FALSE 4533.083084 4962.004391 4859.546763 5651.667027 6495.572339 5670.050408 6665.752124 10212.65051 3302.036862 2472.306619 1.833544048 2.007034384 1.965592264 2.285989523 2.627332828 2.293425243 2.696167245 4.130818741 1.335609765 1 11.27164196 -1 0.156662875 0.825641244 11.10531167 0.848696423 0.315612637 16.8470922 0.16816145 0.60288392 39.94178949 0.1 1 10.27967042 T(ph)LS(ph)VRR ddPTM_HeLa_CUDC101_4h_R1 1 TLSVRR 6 1 A0A087WUQ5;A0A087WVB8 A0A087WUQ5 CNBD2 2 0 T(1)LS(1)VRR 67.032 0.0025157 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 YLVLDEADR ddPTM_HeLa_CUDC101_4h_R1 1 YLVLDEADR 9 0 A0A2R8Y5G6;A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YFR4;A0A2R8YCW1;F6S8Q4;A0A2R8Y645;O00571;O00571-2;A0A2U3TZJ9;A0A0D9SFB3;A0A0D9SF53;A0A0D9SG12;A0A2R8YF78;A0A2R8YDT5;A0A2R8Y7T2;O15523-2;O15523;A0A2R8YDH3;D6RCM4;Q9NQI0-2;Q9NQI0-4;Q9NQI0;Q9NQI0-3 A0A2R8Y5G6 DDX3X;DDX3Y;DDX4 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4 0 0 130.96 0.01703 26720000 3183.7 3171.4 2410.4 2620.3 2968.6 2866.3 2603.8 2606.1 2579 2702.7 FALSE FALSE TRUE 2810.511512 3269.107075 2540.713515 2727.16716 2749.612292 2811.630103 2704.229438 2902.76789 2472.692528 2686.62422 1.046112624 1.216808458 0.945689946 1.015090663 1.023445062 1.046528979 1.006552914 1.080451768 0.920371561 1 11.39157883 -8.97445922 1.190408891 1.003738314 1.045290742 0.139902033 0.071125568 1.002849477 2.803946259 0.026813482 0.011744437 1.06E-09 8.97445922 0.041552428 T(ph)PLCNLLVK ddPTM_HeLa_CUDC101_4h_R1 1 TPLCNLLVK 9 0 H7C3M5;A0A1B0GW05;Q2PZI1-2;Q2PZI1 H7C3M5 DPY19L1 Probable C-mannosyltransferase DPY19L1 1 0 T(1)PLCNLLVK 120.62 0.026779 105540000 183.19 274.66 52.124 241.06 194.92 225.07 137.66 186.16 178.34 203.49 TRUE FALSE FALSE 161.7167459 283.121949 54.94198111 250.8914688 180.5411399 220.7771647 142.9695923 207.3517019 170.9887497 202.2796324 0.799471227 1.399656237 0.271614005 1.240319976 0.89253247 1.091445353 0.706791834 1.025074544 0.845308782 1 7.660207252 T(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_HeLa_CUDC101_4h_R1 1 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 0 T(0.73)PPRDLPT(0.244)IPGVT(0.01)S(0.008)PS(0.007)S(0.001)DEPPMEASQSHLR 72.14 2.53E-05 158260000 650.66 295.46 326.55 331.31 555.11 556.33 474.04 486.25 588.15 528.9 TRUE FALSE FALSE 574.3906211 304.5627724 344.2042808 344.8222538 514.1606412 545.7189322 492.3238816 541.6027345 563.9062081 525.7540793 1.092508159 0.579287512 0.654686848 0.655862251 0.977948934 1.037973748 0.936414763 1.030144617 1.072566491 1 9.038244329 T(ph)PPSEEDSAEAER ddPTM_HeLa_CUDC101_4h_R1 1 TPPSEEDSAEAER 13 0 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 0 T(0.998)PPS(0.002)EEDSAEAER 118.76 0.011364 11382000 191.38 0 0 119.18 142.05 137.03 140.12 0 60.674 0 TRUE FALSE FALSE 168.9467265 0 0 124.0406755 131.5712545 134.4163811 145.5244753 0 58.17299204 0 0 T(ph)PS(ph)PPPPIPEDIALGKK ddPTM_HeLa_CUDC101_4h_R1 2 TPSPPPPIPEDIALGKK 17 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 0 T(1)PS(1)PPPPIPEDIALGKK;T(1)PS(1)PPPPIPEDIALGKK ; 103.73 0.0023491 30771000 13544.9 13833.8 11570.6 12004.7 14796.7 13155.5 12114.7 11954.1 14034.7 13522.9 TRUE FALSE FALSE 11957.18735 14260.00298 12196.14164 12494.30355 13705.17692 12904.58076 12581.96804 13314.90642 13456.18373 13442.46519 0.889508523 1.060817549 0.907284599 0.929465197 1.019543419 0.959986176 0.935986656 0.990510761 1.001020537 1 13.71451012 T(ph)RLNVQLEY(ph)S(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 TRLNVQLEYSR 11 1 Q8NDV3-2;Q8NDV3-3 Q8NDV3-2 3 0 T(1)RLNVQLEY(1)S(1)R 73.758 0.018165 4142800 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)SPSGGTWSSVVSGAK ddPTM_HeLa_CUDC101_4h_R1 1 TSPSGGTWSSVVSGAK 16 0 F8WB06;F8VRK6 F8WB06 ATXN2 1 0 T(0.997)S(0.003)PSGGTWSSVVSGAK 220.72 9.16E-32 42293000 2457.2 2256.9 1847 2143.3 2273.2 2317.8 1996.2 1893.6 2154.7 2157 TRUE FALSE FALSE 2169.170741 2326.432414 1946.854407 2230.713038 2105.510565 2273.591827 2073.194103 2109.15977 2065.882354 2144.170068 1.011659837 1.08500368 0.907975741 1.04036199 0.981969945 1.060359838 0.966898164 0.983671865 0.963488104 1 11.06620362 T(ph)SQDYQALTVHDNLAMK ddPTM_HeLa_CUDC101_4h_R1 2 TSQDYQALTVHDNLAMK 17 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 0 T(0.81)S(0.19)QDYQALTVHDNLAMK;T(0.84)S(0.16)QDYQALTVHDNLAMK ; 145.73 2.99E-05 5019600 2045.17 1619.44 1454.71 1684.52 1891.27 1721.99 1685.09 2040.4 1783.5 1472.46 TRUE FALSE FALSE 1805.438273 1669.333027 1533.356023 1753.222007 1751.75478 1689.14591 1750.084486 2272.670888 1709.983375 1463.701742 1.233474157 1.140487149 1.047587755 1.197800041 1.196797633 1.154023296 1.195656489 1.552687151 1.168259438 1 10.51540589 T(ph)VIIEQSWGSPK ddPTM_HeLa_CUDC101_4h_R1 1 TVIIEQSWGSPK 12 0 P10809;E7EXB4;E7ESH4;C9JL25;P10809-2;C9JL19;C9JCQ4 P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" 1 0 T(0.569)VIIEQS(0.414)WGS(0.017)PK 174.72 2.62E-06 324630000 9745.2 8289.4 6669.3 8008.9 8136.7 8206.2 7393.8 7261.6 7363 7695.6 TRUE FALSE FALSE 8602.882429 8544.786589 7029.862532 8335.537559 7536.471852 8049.680407 7678.981343 8088.231192 7059.494024 7649.826229 1.12458534 1.11699094 0.918957153 1.089637504 0.985182098 1.052269707 1.003811213 1.05730914 0.922830639 1 12.90121126 TAPPAS(ph)PEAR ddPTM_HeLa_CUDC101_4h_R1 5 TAPPASPEAR 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 0 TAPPAS(1)PEAR;TAPPAS(1)PEAR;T(0.012)APPAS(0.988)PEAR;TAPPAS(1)PEAR;TAPPAS(1)PEAR ;;;; 131.12 0.0021585 1112544000 10647.8 9632.9 10638.4 9915.5 10706.2 8874.2 9549.7 10488.2 10073.4 10382.2 TRUE FALSE FALSE 9399.681025 9929.678231 11213.54408 10319.89695 9916.424956 8704.93942 9918.035128 11682.13429 9658.170188 10320.44621 0.910782425 0.962136523 1.08653675 0.999946779 0.960852346 0.843465412 0.961008364 1.131940815 0.935828741 1 13.33321773 TAPTALGITLSS(ph)SPTSTPELR ddPTM_HeLa_CUDC101_4h_R1 1 TAPTALGITLSSSPTSTPELR 21 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 0 TAPTALGITLSS(0.894)S(0.099)PT(0.005)S(0.001)TPELR 226.08 2.53E-35 87313000 2928.1 2616.5 2044.9 2467 2878.7 2369.6 2157 2362.4 2839.5 2528.3 TRUE FALSE FALSE 2584.872557 2697.111264 2155.453479 2567.614923 2666.344036 2324.403828 2240.196213 2631.326067 2722.454608 2513.261559 1.028493253 1.073151839 0.857631977 1.021626625 1.060909887 0.924855521 0.891350208 1.04697661 1.083235686 1 11.29534511 TAS(ph)PPGPPPYGK ddPTM_HeLa_CUDC101_4h_R1 2 TASPPGPPPYGK 12 0 P54259 P54259 ATN1 Atrophin-1 1 0 T(0.008)AS(0.991)PPGPPPYGK;T(0.009)AS(0.991)PPGPPPYGK ; 108.56 0.0061141 91988000 9160.2 8398 9027.3 8488.3 9111 8855.8 7379.6 7991.5 9703.3 9045.4 TRUE FALSE FALSE 8086.455242 8656.732426 9515.343144 8834.489564 8438.899682 8686.89037 7664.233644 8901.220057 9303.325867 8991.597559 0.89933465 0.962757994 1.058248335 0.982527243 0.938531738 0.966112008 0.852377299 0.989948671 1.034668846 1 13.13436175 TAST(ph)PTPPQT(ph)GGGLEPQANGETPQVAVIVRPDDR ddPTM_HeLa_CUDC101_4h_R1 1 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JF13;C9J6B6;C9JSU8;C9J556;C9K073;C9J2Z7;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 2 0 T(0.013)AS(0.182)T(0.761)PT(0.276)PPQT(0.7)GGGLEPQANGET(0.068)PQVAVIVRPDDR 57.509 0.0014775 18075000 934.81 908.77 704.24 690.17 813.57 916.28 647.56 613.12 724.76 837.47 TRUE FALSE FALSE 825.2329889 936.7681265 742.3133446 718.3181158 753.554562 898.8034856 672.5366061 682.9151025 694.885086 832.4886912 0.991284323 1.125262285 0.891679794 0.862856305 0.905182941 1.079658493 0.807862753 0.820329585 0.834708139 1 9.701286864 TEAPAPASSTPQEPWPGPTAPS(ph)PTSRPPWAVDPAFAER ddPTM_HeLa_CUDC101_4h_R1 2 TEAPAPASSTPQEPWPGPTAPSPTSRPPWAVDPAFAER 38 1 Q9NR12-2;Q9NR12 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 1 0 TEAPAPASSTPQEPWPGPT(0.042)APS(0.88)PT(0.042)S(0.037)RPPWAVDPAFAER;TEAPAPASSTPQEPWPGPT(0.016)APS(0.562)PT(0.081)S(0.341)RPPWAVDPAFAER ; 105.7 8.43E-18 27797000 5658.4 4927.72 4317.27 4698.71 5595.2 4647.63 5272.7 4289.86 5299.3 5022.35 TRUE FALSE FALSE 4995.13093 5079.537212 4550.674675 4890.343703 5182.453243 4558.984201 5476.069805 4778.200322 5080.860611 4992.476839 1.000531618 1.017438313 0.911506417 0.979542592 1.038052536 0.913170827 1.096864338 0.957080118 1.017703392 1 12.28554002 TEARS(ph)S(ph)DEENGPPS(ph)SPDLDR ddPTM_HeLa_CUDC101_4h_R1 1 TEARSSDEENGPPSSPDLDR 20 1 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 3 0 T(0.604)EARS(0.671)S(0.725)DEENGPPS(0.568)S(0.432)PDLDR 63.491 0.029294 31600000 1499.9 1112.2 1203.6 1544.1 1669.6 1288.5 1203.1 1189.9 1419.7 1337.8 TRUE FALSE FALSE 1324.083996 1146.465564 1268.670257 1607.075072 1546.436934 1263.924009 1249.50397 1325.353406 1361.179365 1329.842706 0.99566963 0.862106141 0.954000237 1.208470043 1.162872065 0.950431208 0.939587791 0.996624187 1.023564185 1 10.3770399 YNEWADDRR ddPTM_HeLa_CUDC101_4h_R1 1 YNEWADDRR 9 1 Q92620 Q92620 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0 0 83.998 0.038829 13881000 2973.2 2217.6 2363.4 2792.6 2634.7 2568.8 2116.4 2106.6 2501.6 2083.3 FALSE FALSE TRUE 2624.686003 2285.921627 2491.172553 2906.494299 2440.34343 2519.80442 2198.030257 2346.406829 2398.482989 2070.908439 1.267408039 1.103825541 1.202937081 1.403487592 1.178392721 1.216762833 1.061384567 1.133032627 1.158179157 1 11.01604805 -9.425535314 1.067900992 0.996035056 1.201965879 0.101474994 0.101148658 0.44402144 0.877190981 0.070806469 0.01646803 3.75E-10 9.425535314 0.205930823 YNGLIHR ddPTM_HeLa_CUDC101_4h_R1 2 YNGLIHR 7 0 H0YLP6;H0YMF4;H0YKD8;P46779-4;P46779-5;P46779;P46779-2;P46779-3 H0YLP6 RPL28 60S ribosomal protein L28 0 0 ; ; 119.56 0.011081 23709000 22552 17107.1 14797 18204.3 15922.3 16717.2 15099.9 14387.9 14509.3 8431.7 FALSE FALSE TRUE 19908.48875 17634.14947 15596.97058 18946.75004 14747.74365 16398.34726 15682.3082 16025.76038 13911.22051 8381.547873 2.375275909 2.103925163 1.860869951 2.260531148 1.759548937 1.956481966 1.871051557 1.912028735 1.659743609 1 13.03300098 -9.415348326 1.112266672 0.993051434 2.035108644 0.451326126 0.26550872 0.180290611 0.394719169 0.146974851 0.036169274 3.84E-10 9.415348326 1.04205721 TGPSLSERPTSDS(ph)VAR ddPTM_HeLa_CUDC101_4h_R1 1 TGPSLSERPTSDSVAR 16 1 Q6IB99;F5GYP8;F5H8C5;F5H0S5;F5H7J1;Q8NHQ8-2;Q8NHQ8 Q6IB99 C12orf2;RASSF8 Ras association domain-containing protein 8 1 0 TGPSLSERPT(0.005)S(0.011)DS(0.984)VAR 98.898 0.023855 7026000 1395.2 1085.5 1680.3 1570.6 1310 1530.4 1172.9 1159.5 1124.4 1347.1 TRUE FALSE FALSE 1231.656771 1118.942968 1771.142101 1634.655857 1213.36391 1501.21017 1218.139146 1291.492793 1078.051756 1339.087389 0.919773258 0.835601154 1.32264863 1.220723808 0.906112566 1.121069604 0.909678603 0.964457438 0.805064527 1 10.3870344 TGS(ph)QGQCTQVR ddPTM_HeLa_CUDC101_4h_R1 1 TGSQGQCTQVR 11 0 P62857 P62857 RPS28 40S ribosomal protein S28 1 0 T(0.031)GS(0.966)QGQCT(0.004)QVR 162.67 8.67E-05 31792000 603.73 527.56 300.86 454.81 968.33 637.16 594.46 543.46 541.26 537.88 TRUE FALSE FALSE 532.9616846 543.8134983 317.1254017 473.3591177 896.8982251 625.0072346 617.3885213 605.3252897 518.9490337 534.6806658 0.996785032 1.01708091 0.59311178 0.885311828 1.677446525 1.168935543 1.154686453 1.132124889 0.970577518 1 9.062533699 TGSGS(ph)PFAGNSPAR ddPTM_HeLa_CUDC101_4h_R1 1 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 0 T(0.132)GS(0.061)GS(0.805)PFAGNS(0.002)PAR 130.95 0.00080515 13531000 1647.5 1719.7 1688.9 1457.8 1924.2 1585.5 1426.5 1418.7 1890.7 1699.2 TRUE FALSE FALSE 1454.382547 1772.681919 1780.207043 1517.255385 1782.2556 1555.259229 1481.520583 1580.199073 1812.764546 1689.093083 0.861043457 1.049487406 1.053942533 0.898266295 1.055155348 0.920765851 0.877110088 0.935531078 1.073217672 1 10.72203312 YNPTWHCIVGR ddPTM_HeLa_CUDC101_4h_R1 1 YNPTWHCIVGR 11 0 P63167;Q96FJ2 P63167 DYNLL1;DYNLL2 "Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic" 0 0 78.548 0.039287 13815000 1505.6 1438.6 1287.1 1534.1 1659.1 1612.6 1596.3 1557.8 1384.9 1130.7 FALSE FALSE TRUE 1329.11585 1482.921561 1356.684519 1596.667229 1536.711498 1581.842342 1657.869826 1735.133655 1327.813836 1123.974546 1.18251419 1.31935511 1.207042031 1.420554615 1.36721201 1.407364915 1.475006557 1.543748176 1.181355788 1 10.13439365 -5.344067051 0.142642624 0.823526542 1.979596278 0.786467997 0.072539965 2.525689727 0.095435363 0.191063589 0.64020495 4.53E-06 5.344067051 1.156069735 THTDSS(ph)EKELEPEAAEEALENGPK ddPTM_HeLa_CUDC101_4h_R1 2 THTDSSEKELEPEAAEEALENGPK 24 1 Q9H3P7 Q9H3P7 ACBD3 Golgi resident protein GCP60 1 0 T(0.064)HT(0.057)DS(0.182)S(0.698)EKELEPEAAEEALENGPK;T(0.015)HT(0.021)DS(0.253)S(0.711)EKELEPEAAEEALENGPK ; 59.212 0.004188 26945000 2415.58 2146.31 2080.05 2261.74 2928.8 2256.98 2539.26 2333.61 2495.31 2821.99 TRUE FALSE FALSE 2132.429374 2212.435267 2192.503795 2353.983533 2712.748259 2213.931867 2637.200109 2599.25873 2392.452266 2805.204678 0.760168907 0.788689426 0.78158425 0.839148584 0.967041115 0.789222934 0.940109693 0.926584342 0.852861926 1 11.45389032 YPALTKPENQDIDWTLLEGETR ddPTM_HeLa_CUDC101_4h_R1 1 YPALTKPENQDIDWTLLEGETR 22 1 P13797;P13797-3;A0A0A0MSQ0;P13797-2;H7C4N2 P13797 PLS3 Plastin-3 0 0 88.57 0.00067915 12316000 877.6 926.53 765.9 1180 871.66 912.16 1328.1 746.56 825.11 1128.1 FALSE FALSE TRUE 774.7290584 955.0752911 807.3068707 1228.1255 807.3593784 894.7620678 1379.325262 831.5453727 791.0986166 1121.390011 0.690864954 0.851688781 0.719916231 1.095181416 0.719963055 0.797904439 1.230013865 0.741530925 0.705462514 1 10.13107241 YPDLYPQEDEDEEEER ddPTM_HeLa_CUDC101_4h_R1 1 YPDLYPQEDEDEEEER 16 0 Q8N4Q1;Q8N4Q1-2 Q8N4Q1 CHCHD4 Mitochondrial intermembrane space import and assembly protein 40 0 0 111.72 0.0082497 5050000 1253.6 865.48 708.17 827.5 940.09 747.8 843.42 697.61 1093.9 279.74 FALSE FALSE TRUE 1106.654908 892.144413 746.4558123 861.2490268 870.7414336 733.5369609 875.9509919 777.0231026 1048.808979 278.076094 3.979683734 3.208274397 2.684358089 3.097170326 3.13130633 2.637900117 3.150040621 2.794282282 3.771661791 1 8.119335913 -9.456248764 1.172740623 0.991812191 3.15405395 0 0.918534719 0.177141404 0.43318021 0.311391257 0.075972821 3.50E-10 9.456248764 2.16224176 YPDLYPQEDEDEEEEREK ddPTM_HeLa_CUDC101_4h_R1 1 YPDLYPQEDEDEEEEREK 18 1 Q8N4Q1;Q8N4Q1-2 Q8N4Q1 CHCHD4 Mitochondrial intermembrane space import and assembly protein 40 0 0 99.915 0.0028025 10887000 1013.6 953.96 817.81 845.02 842.28 906.04 851.18 666.06 922.88 689.75 FALSE FALSE TRUE 894.7873445 983.3503769 862.0232823 879.4835681 780.1466825 888.7587966 884.0102977 741.8815781 884.8384958 685.6473363 1.305025626 1.43419266 1.257240037 1.28270544 1.137825003 1.296233135 1.289307565 1.082016277 1.290515472 1 9.421322905 -9.226257228 0.989271384 1.001767313 1.265311991 0 0.126120065 0.32649754 0.579505784 0.059397466 0.016940965 5.94E-10 9.226257228 0.263544678 TIMQVSS(ph)GSRGSSGEAT(ph)R ddPTM_HeLa_CUDC101_4h_R1 2 TIMQVSSGSRGSSGEATR 18 1 K7EJ87 K7EJ87 POLR2E 2 0 T(0.128)IMQVS(0.395)S(0.467)GS(0.01)RGSS(0.028)GEAT(0.972)R;T(0.063)IMQVS(0.421)S(0.501)GS(0.015)RGSS(0.182)GEAT(0.818)R ; 72.167 0.024948 282550000 0 0 63.934 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 67.39046543 0 0 0 0 0 0 0 0 TLENSPISSCDT(ph)SDTEGPVPVNSAAVLK ddPTM_HeLa_CUDC101_4h_R1 1 TLENSPISSCDTSDTEGPVPVNSAAVLK 28 0 Q8N556;Q8N556-2 Q8N556 AFAP1 Actin filament-associated protein 1 1 0 TLENS(0.004)PIS(0.027)S(0.067)CDT(0.443)S(0.443)DT(0.017)EGPVPVNSAAVLK 66.604 0.00086589 4133900 2844.1 2969 2576.6 2377.9 2955.1 2798.8 2336.2 2656.8 2984.1 2563.1 TRUE FALSE FALSE 2510.718909 3060.471371 2715.89879 2474.88104 2737.10816 2745.417553 2426.308017 2959.239373 2861.094135 2547.854567 0.985424734 1.201195473 1.065955186 0.971358833 1.07427959 1.07754092 0.952294549 1.161463221 1.122942483 1 11.31506721 TLEVVS(ph)PSQSVTGSAGHTPYYQSPTDEK ddPTM_HeLa_CUDC101_4h_R1 1 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.008)LEVVS(0.395)PS(0.112)QS(0.112)VT(0.035)GS(0.299)AGHT(0.026)PY(0.006)Y(0.007)QS(0.002)PTDEK 55.171 0.0040138 10761000 1757.5 794.62 662.58 690.24 1810.2 1605.3 1537.5 1365.4 1642.3 1415.4 TRUE FALSE FALSE 1551.488514 819.1013003 698.401079 718.3909707 1676.665152 1574.681577 1596.80189 1520.831617 1574.603699 1406.981138 1.102707401 0.582169354 0.496382688 0.510590335 1.191675643 1.119191676 1.134913502 1.08091827 1.119136324 1 10.45838727 TLEVVSPSQSVTGS(ph)AGHTPYYQSPTDEK ddPTM_HeLa_CUDC101_4h_R1 2 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 0 T(0.001)LEVVS(0.014)PS(0.049)QS(0.049)VT(0.058)GS(0.648)AGHT(0.085)PY(0.042)Y(0.053)QSPTDEK;TLEVVS(0.22)PS(0.22)QS(0.22)VT(0.051)GS(0.242)AGHT(0.046)PYYQSPTDEK ; 85.407 7.20E-07 42031000 3794.1 1622.94 1374.3 1336.58 4048.1 3722.8 3109.7 2907.8 3442.1 2969.7 TRUE FALSE FALSE 3349.361349 1672.940858 1448.598815 1391.09151 3749.479728 3651.793793 3229.642171 3238.812198 3300.215181 2952.036092 1.134593631 0.566707454 0.490711756 0.4712312 1.27013343 1.237042393 1.09403885 1.09714519 1.117945404 1 11.52749464 TLLSES(ph)SSQSSKSPSLSSK ddPTM_HeLa_CUDC101_4h_R1 1 TLLSESSSQSSKSPSLSSK 19 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 T(0.19)LLS(0.084)ES(0.332)S(0.332)S(0.005)QS(0.03)S(0.008)KS(0.011)PS(0.007)LS(0.001)SK 79.92 0.0037282 282660000 2951.9 1957.3 2057.6 2056.5 2824.1 2796 2402.5 2096.9 2386.1 2605.2 TRUE FALSE FALSE 2605.882757 2017.602093 2168.84008 2140.372959 2615.771769 2742.670958 2495.16523 2335.60262 2287.743948 2589.704155 1.006247278 0.779085939 0.837485655 0.826493233 1.010065866 1.059067289 0.963494315 0.901880092 0.883399729 1 11.33857158 YPHVEDYR ddPTM_HeLa_CUDC101_4h_R1 2 YPHVEDYR 8 0 A0A087WTV2;K9J957;P61289;P61289-3;P61289-2;B3KQ25;K7ESG5 A0A087WTV2 PSME3 Proteasome activator complex subunit 3 0 0 ; ; 101.54 0.001574 4904300 2925 2248.4 2418.1 2046.36 2276.6 1995.2 2038.31 2250.53 2557.5 2325.36 FALSE FALSE TRUE 2582.135934 2317.670539 2548.8298 2129.819406 2108.659754 1957.144884 2116.928299 2506.721238 2452.078768 2311.528655 1.117068537 1.002657066 1.102659833 0.921390008 0.912236043 0.846688567 0.915813133 1.084443073 1.060803967 1 11.17463153 -6.249787028 24.56682885 1.05513276 0.928691669 0.45363217 0.065873603 440.5154311 928745.1518 0.010793345 0.017794271 5.63E-07 6.249787028 -0.12644109 YPIEHGIITNWDDMEK ddPTM_HeLa_CUDC101_4h_R1 2 YPIEHGIITNWDDMEK 16 0 P63267;P68133;P68032;P62736;A6NL76;F8WB63;B8ZZJ2;C9JFL5;F6UVQ4;F6QUT6 P63267 ACTG2;ACTA1;ACTC1;ACTA2 "Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle" 0 0 ; ; 149.3 0.00017853 3018000000 13550 12350 11431.6 11537.7 12429.1 12227.1 11326.4 11554.6 11806.5 12320.8 FALSE FALSE TRUE 11961.68954 12730.48886 12049.62687 12008.25728 11512.23006 11993.88844 11763.26304 12869.92896 11319.83107 12247.51533 0.976662549 1.039434409 0.983842563 0.980464768 0.939964535 0.979291563 0.960461181 1.050819583 0.924255309 1 13.58020148 -6.534112183 24.98882807 0.993369189 0.978851467 0 0.037755019 586.4787949 1304620.832 0.004737595 0.006703695 2.92E-07 6.534112183 -0.014517722 YPIEHGIVTNWDDMEK ddPTM_HeLa_CUDC101_4h_R1 1 YPIEHGIVTNWDDMEK 16 0 P60709;A0A2R8Y793;G5E9R0;A0A2R8YGF8;E7EVS6;C9JUM1;C9JZR7;P63261;I3L3I0;I3L1U9;I3L4N8;K7EM38;I3L3R2;J3KT65 P60709;P63261 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 0 74.89 0.022593 34720000 3033.9 2090.5 2555.1 2470.8 2828.1 2726.2 2417.8 2390.6 2640.1 2866.5 FALSE FALSE TRUE 2678.270841 2154.905827 2693.236435 2571.569904 2619.476697 2674.202277 2511.055356 2662.736241 2531.273961 2849.449931 0.939925567 0.75625327 0.945177666 0.902479414 0.91929206 0.938497725 0.88124214 0.934473778 0.888337757 1 11.47646773 -7.98906204 1.664217888 0.983386236 0.89998204 0.000453777 0.060581707 0.274930683 1.560297873 0.01163499 0.010254394 1.03E-08 7.98906204 -0.083404196 TPAS(ph)PHFR ddPTM_HeLa_CUDC101_4h_R1 2 TPASPHFR 8 0 P29590-2 P29590-2 PML Protein PML 1 0 TPAS(1)PHFR;TPAS(1)PHFR ; 112.36 0.0067447 52955000 1729.24 1570.89 1753.61 1617.88 1613.7 1602.95 1601.24 1724.88 1725.6 1756.43 TRUE FALSE FALSE 1526.541109 1619.287259 1848.415461 1683.864139 1494.660566 1572.376399 1663.000363 1921.233367 1654.470038 1745.982676 0.874316297 0.92743604 1.058667698 0.96442202 0.856056928 0.900568156 0.95247243 1.100373671 0.947586743 1 10.76982353 YPLFEGQETGK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 YPLFEGQETGKK 12 1 P41250 P41250 GARS Glycine--tRNA ligase 0 1 ; YPLFEGQETGK(1)K;YPLFEGQETGK(1)K 125.72 0.0011563 1811900 1447.36 648.89 779.48 530.99 1371.36 1064.11 1201.89 1013.19 1468.44 1077.4 FALSE TRUE FALSE 1277.702655 668.8815318 821.6210466 552.6460673 1270.197505 1043.813875 1248.2473 1128.527454 1407.910282 1070.991577 1.19300906 0.624544157 0.767159205 0.516013458 1.186001396 0.974623795 1.165506178 1.053722063 1.314585765 1 10.06473142 -7.320639553 24.99971295 1.091143157 0.902767708 0.216557356 0.221628264 388.2769585 163965.0481 0.038532777 0.044063911 4.78E-08 7.320639553 -0.18837545 YPMAVGLNK(ac)GHK ddPTM_HeLa_CUDC101_4h_R1 1 YPMAVGLNKGHK 12 1 Q9Y3U8;J3QSB5;J3KTD3 Q9Y3U8 RPL36 60S ribosomal protein L36 0 1 YPMAVGLNK(1)GHK 92.611 0.0073795 0 173.33 266.39 303.4 247.88 209.73 191.53 0 218.06 283.31 176.78 FALSE TRUE FALSE 153.0125202 274.5971602 319.8027217 257.9896178 194.2586357 187.8768844 0 242.883069 271.6318419 175.7285047 0.8707325 1.562621617 1.819868224 1.468114796 1.105447497 1.069131526 0 1.382149523 1.545747187 1 7.457204418 -4.956433792 24.99960139 1.103084513 0.651946826 0.116814754 0.45574123 200.3165514 114945.5961 0.063335594 0.190006634 1.11E-05 4.956433792 -0.451137687 TPQEAITDGLEIVVS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 TPQEAITDGLEIVVSPR 17 0 X6RFN3;Q99496;Q99496-2 X6RFN3 RNF2 E3 ubiquitin-protein ligase RING2 1 0 TPQEAITDGLEIVVS(1)PR;TPQEAIT(0.002)DGLEIVVS(0.998)PR ; 131.71 0.00025273 6292700 873.83 817.08 608.23 755.25 714.56 713.89 655.43 804.26 924.65 716.29 TRUE FALSE FALSE 771.400972 842.2532663 641.1127536 786.0523595 661.8483324 700.2737377 680.7101547 895.8137075 886.5355356 712.0294752 1.083383482 1.182891012 0.900401986 1.103960421 0.929523784 0.983489816 0.956014011 1.258113236 1.245082636 1 9.475793154 YPSIIVNCVEEK ddPTM_HeLa_CUDC101_4h_R1 2 YPSIIVNCVEEK 12 0 Q9H0D6 Q9H0D6 XRN2 5-3 exoribonuclease 2 0 0 ; ; 52.391 0.030534 3758800 1250.33 1096.71 1100.02 1497.09 1422.13 1440.54 1727.55 1387.3 1526.08 1559.53 FALSE FALSE TRUE 1103.768213 1130.498335 1159.490409 1558.147801 1317.222303 1413.0641 1794.182182 1545.224624 1463.174336 1550.253846 0.71199192 0.729234337 0.747935837 1.00509204 0.849681687 0.911504979 1.157347351 0.996755872 0.94382887 1 10.59828875 -4.914429719 5.174289832 0.852699857 1.074889432 0.403375508 0.10606735 0.180348864 8.140941373 0.018430848 0.057651536 1.22E-05 4.914429719 0.222189575 TRHS(ph)PTPQQSNR ddPTM_HeLa_CUDC101_4h_R1 1 TRHSPTPQQSNR 12 1 A9Z1X7;Q8IYB3;Q8IYB3-2;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 0 T(0.051)RHS(0.938)PT(0.011)PQQSNR 66.674 0.035812 1749000 0 0 62.685 67.102 0 0 0 0 139.16 0 TRUE FALSE FALSE 0 0 66.07394071 69.8387096 0 0 0 0 133.4237659 0 0 TSGGDHAPDS(ph)PSGENSPAPQGR ddPTM_HeLa_CUDC101_4h_R1 4 TSGGDHAPDSPSGENSPAPQGR 22 0 E9PL60;E9PII7;H0YDE3;H0YDU2;E9PRI1;Q96NY9 E9PL60 MUS81 Crossover junction endonuclease MUS81 1 0 TSGGDHAPDS(0.967)PS(0.033)GENSPAPQGR;T(0.004)S(0.004)GGDHAPDS(0.983)PS(0.009)GENSPAPQGR;TSGGDHAPDS(0.99)PS(0.01)GENSPAPQGR;TSGGDHAPDS(0.943)PS(0.054)GENS(0.003)PAPQGR ;;; 123.03 3.34E-07 25951900 5798.35 3770.98 3537.08 3361.59 6178.98 5370.29 5227.2 4853.47 5373.69 5076.21 TRUE FALSE FALSE 5118.676203 3887.159424 3728.305244 3498.69017 5723.168956 5267.860666 5428.814855 5405.969406 5152.184224 5046.016477 1.014399423 0.770342198 0.738861092 0.693356866 1.134195455 1.043964222 1.0758615 1.071334077 1.021039913 1 12.3009292 TSQVGAASAPAKES(ph)PR ddPTM_HeLa_CUDC101_4h_R1 7 TSQVGAASAPAKESPR 16 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 0 TSQVGAASAPAKES(1)PR;TSQVGAAS(0.015)APAKES(0.985)PR;TSQVGAASAPAKES(1)PR;TSQVGAAS(0.002)APAKES(0.998)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR ;;;;;; 155.16 5.91E-05 7497886000 32188.9 37305.4 27660.4 29575.1 30369.2 29931.4 29673.2 31038.7 31153.3 32182.7 TRUE FALSE FALSE 28415.76594 38454.73516 29155.80489 30781.30041 28128.92462 29360.50841 30817.70526 34572.02015 29869.14779 31991.27587 0.888234844 1.202038184 0.911367368 0.962177956 0.879268609 0.917766098 0.963315917 1.080670252 0.933665413 1 14.96539091 TSS(ph)DPVLLK ddPTM_HeLa_CUDC101_4h_R1 3 TSSDPVLLK 9 0 Q9BRG2;Q9BRG2-2 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 0 T(0.003)S(0.028)S(0.969)DPVLLK;T(0.02)S(0.02)S(0.96)DPVLLK;T(0.083)S(0.031)S(0.886)DPVLLK ;; 147.74 0.00095461 85720000 17655.6 15316.7 14649.8 14454.6 16699.2 16516.9 15320.7 16539.5 15788.5 15584.8 TRUE FALSE FALSE 15586.03733 15788.58937 15441.8125 15044.12107 15467.33329 16201.86765 15911.62453 18422.28983 15137.69135 15492.10092 1.006063504 1.019138041 0.996753932 0.971083338 0.998401274 1.04581475 1.02707984 1.189140835 0.977123208 1 13.91924518 TSS(ph)EDNLYLAVLR ddPTM_HeLa_CUDC101_4h_R1 7 TSSEDNLYLAVLR 13 0 Q15149-4 Q15149-4 PLEC Plectin 1 0 T(0.003)S(0.034)S(0.963)EDNLYLAVLR;T(0.007)S(0.166)S(0.827)EDNLYLAVLR;T(0.017)S(0.028)S(0.955)EDNLYLAVLR;T(0.083)S(0.083)S(0.835)EDNLYLAVLR;T(0.046)S(0.068)S(0.885)EDNLYLAVLR;T(0.219)S(0.041)S(0.741)EDNLYLAVLR;T(0.026)S(0.026)S(0.948)EDNLYLAVLR ;;;;;; 212.03 7.40E-24 3554332000 13633.14 14584.6 10734.32 11883.2 12191.41 12585.85 11546.72 11581.03 11655.81 12327.23 TRUE FALSE FALSE 12035.084 15033.93424 11314.64981 12367.84826 11292.07397 12345.79588 11992.08086 12899.36764 11175.35258 12253.90709 0.982142586 1.226868633 0.923350383 1.009298354 0.921508046 1.007498734 0.978633245 1.052673857 0.911982807 1 13.5809542 TSSESIYSRPGSS(ph)IPGSPGHT(ph)IYAK ddPTM_HeLa_CUDC101_4h_R1 1 TSSESIYSRPGSSIPGSPGHTIYAK 25 1 O14639-3;O14639-5;H0Y7N6;F6XFR5;F8W8M4;A0A0A0MRL6;A0A3B3IS55;O14639-2;O14639-6;O14639;A0A494C1P1;A0A494C1G0 O14639-3;F8W8M4 ABLIM1 Actin-binding LIM protein 1 2 0 T(0.094)S(0.103)S(0.046)ES(0.062)IY(0.116)S(0.083)RPGS(0.236)S(0.262)IPGS(0.151)PGHT(0.832)IY(0.014)AK 44.278 0.033099 12415000 4762.1 3271.8 2831.5 3092.7 4893.9 4467.1 4111 3714.4 4594.3 4125 TRUE FALSE FALSE 4203.893857 3372.60028 2984.579455 3218.833674 4532.886747 4381.89751 4269.562647 4137.232282 4404.921009 4100.464317 1.025223861 0.822492289 0.727863779 0.784992485 1.105456943 1.06863447 1.041238825 1.008966781 1.074249321 1 12.00157157 TST(ph)PEDFIR ddPTM_HeLa_CUDC101_4h_R1 1 TSTPEDFIR 9 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 T(0.008)S(0.35)T(0.642)PEDFIR 128.35 0.017796 2291500 1479.3 1856 1449.5 1433.2 1624.1 1440.7 1449.1 1407.8 1453.6 1578 TRUE FALSE FALSE 1305.898696 1913.18116 1527.864354 1491.652091 1504.293379 1413.221048 1504.992272 1568.058261 1393.681993 1568.613986 0.832517565 1.219663459 0.974021887 0.950936371 0.958995261 0.900936152 0.95944081 0.999645723 0.888479897 1 10.61527465 TSVSSVSAS(ph)PSR ddPTM_HeLa_CUDC101_4h_R1 1 TSVSSVSASPSR 12 0 P12036-2;P12036 P12036-2 NEFH Neurofilament heavy polypeptide 1 0 T(0.01)SVSSVSAS(0.95)PS(0.039)R 142.12 0.0011823 58863000 2033.8 1551.6 1865.5 1746 1955.9 1832.7 1293.6 1641 1577.6 1793.4 TRUE FALSE FALSE 1795.401047 1599.402957 1966.354573 1817.209427 1811.617154 1797.744301 1343.494585 1827.804807 1512.57066 1782.732777 1.007106096 0.8971636 1.103000179 1.019339214 1.016202303 1.008420513 0.753615238 1.02528255 0.84845619 1 10.79987475 TTPATGEQS(ph)PGAR ddPTM_HeLa_CUDC101_4h_R1 3 TTPATGEQSPGAR 13 0 O00308-4;O00308-2;O00308 O00308-4 WWP2 NEDD4-like E3 ubiquitin-protein ligase WWP2 1 0 TTPATGEQS(1)PGAR;TTPATGEQS(1)PGAR;TTPATGEQS(1)PGAR ;; 147.39 0.00046189 206757000 7672.9 7026.7 6689.1 6712.9 7524.2 6435.3 6832.6 5964.8 7715.4 7046.6 TRUE FALSE FALSE 6773.494293 7243.184298 7050.732979 6986.681078 6969.154756 6312.557374 7096.135671 6643.808721 7397.367946 7004.68651 0.966994638 1.034048317 1.006573666 0.997429516 0.994927431 0.901190562 1.013055425 0.948480523 1.056059816 1 12.77410477 TTPNS(ph)GDVQVTEDAVRR ddPTM_HeLa_CUDC101_4h_R1 1 TTPNSGDVQVTEDAVRR 17 1 P35269;M0QXD6 P35269 GTF2F1 General transcription factor IIF subunit 1 1 0 T(0.293)T(0.025)PNS(0.588)GDVQVT(0.094)EDAVRR 157.83 0.00011592 5017300 2229.5 1399.6 1594.1 1602.7 2003.4 1880.2 1637.6 1848.4 2032.1 1889.1 TRUE FALSE FALSE 1968.16139 1442.720017 1680.281868 1668.065033 1855.613173 1844.338318 1700.762781 2058.814385 1948.335978 1877.863549 1.048085411 0.768277342 0.894783792 0.888278083 0.988151229 0.982147142 0.905690289 1.096359949 1.037527982 1 10.87487652 TTS(ph)PLEEEEREIK ddPTM_HeLa_CUDC101_4h_R1 1 TTSPLEEEEREIK 13 1 S4R3H4;Q9UKV3;E7EQT4;Q9UKV3-5 S4R3H4;Q9UKV3-5 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 0 TT(0.004)S(0.996)PLEEEEREIK 141.34 0.0035437 32508000 3742.5 3883.3 3516.8 3230.2 4347.5 3629.5 4005.2 3524.2 3887 4129.3 TRUE FALSE FALSE 3303.809823 4002.93987 3706.928846 3361.941518 4026.793586 3560.273335 4159.681906 3925.380683 3726.776215 4104.73874 0.804877005 0.975199671 0.90308521 0.819039099 0.981010934 0.867356867 1.013385302 0.956304635 0.907920443 1 12.00307468 TTTAAAVASTGPS(ph)SR ddPTM_HeLa_CUDC101_4h_R1 2 TTTAAAVASTGPSSR 15 0 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;P27816-4;H0Y2V1;H7C4C5;B5MEG9;F8W9U4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 TTTAAAVASTGPS(0.944)S(0.056)R;TTTAAAVAS(0.003)T(0.002)GPS(0.806)S(0.189)R ; 204.67 3.71E-17 21554800 2130.38 2437.78 2651.5 2355.93 2801.9 2343.25 2241.5 2348.21 2327.96 2676.4 TRUE FALSE FALSE 1880.660086 2512.885112 2794.84811 2452.015009 2595.209419 2298.55641 2327.955406 2615.520735 2232.000503 2660.480654 0.706887338 0.944522979 1.050504955 0.921643615 0.975466375 0.863962836 0.875013093 0.983100828 0.838946339 1 11.3774712 YQLDKDGVVLFK ddPTM_HeLa_CUDC101_4h_R1 2 YQLDKDGVVLFK 12 1 P07237;H7BZ94;I3L398;I3L312;I3L3U6 P07237 P4HB Protein disulfide-isomerase 0 0 ; ; 105.2 0.0090836 34023000 3682.3 3391.2 3209.8 3385 3514.7 3411.8 2941.5 2823.3 3244.2 4100.6 FALSE FALSE TRUE 3250.666376 3495.678852 3383.331497 3523.054931 3255.427583 3346.725599 3054.95464 3144.69306 3110.472703 4076.209449 0.797472852 0.857580774 0.830019051 0.864296836 0.7986409 0.821038674 0.749459683 0.771474847 0.763079705 1 11.99301247 -13.52287875 0.224979938 2.053673459 0.782651152 0 0.082041694 13.75057284 0.175704092 6.375789775 0.025850782 3.00E-14 13.52287875 -1.271022308 TTTS(ph)PFFSEDTFR ddPTM_HeLa_CUDC101_4h_R1 1 TTTSPFFSEDTFR 13 0 A0A5F9ZHK5;A0A5F9ZGT0;H0Y9K9;G5E9Z1;A0A590UJE4;A0A494C0H4;H0Y9M2;Q17R98-3;Q17R98-2;Q17R98 A0A5F9ZHK5 ZNF827 Zinc finger protein 827 1 0 T(0.006)T(0.001)T(0.16)S(0.832)PFFSEDTFR 122.52 0.0019542 26545000 1064.6 1012.7 919.79 995.82 1106.5 862.91 1023.2 876.73 1040.4 1020.8 TRUE FALSE FALSE 939.8092018 1043.900087 969.5166296 1036.433844 1024.875699 846.4514295 1062.665167 976.5333993 997.5142716 1014.728236 0.926168375 1.028748437 0.955444616 1.021390562 1.010000178 0.834165641 1.047241152 0.962359541 0.983035887 1 9.986877682 TVCGSPLAAQPSPSAELPQAAPPPPGS(ph)PSLPGR ddPTM_HeLa_CUDC101_4h_R1 1 TVCGSPLAAQPSPSAELPQAAPPPPGSPSLPGR 33 0 A0A087WU73;W0Z7M9;B0QY83;A0A499FIJ6;Q969V6 A0A087WU73 MKL1;mkl1 MKL/myocardin-like protein 1 1 0 TVCGSPLAAQPSPSAELPQAAPPPPGS(0.776)PS(0.224)LPGR 101.92 1.21E-12 8438800 2304.6 2022.5 1374.8 2000.1 2043.6 1819.8 2054.1 1441.1 1456 1862.2 TRUE FALSE FALSE 2034.458282 2084.810828 1449.125847 2081.672723 1892.847699 1785.090347 2133.327325 1605.148999 1395.983064 1851.123552 1.099039705 1.126240777 0.782835832 1.124545534 1.022539904 0.96432804 1.152449994 0.867121483 0.754127439 1 10.85418547 TVSSPIPYTPSPSSSRPISPGLSYAS(ph)HTVGFTPPTSLTR ddPTM_HeLa_CUDC101_4h_R1 1 TVSSPIPYTPSPSSSRPISPGLSYASHTVGFTPPTSLTR 39 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 0 TVSSPIPYTPSPS(0.001)S(0.017)S(0.017)RPIS(0.059)PGLS(0.255)Y(0.232)AS(0.31)HT(0.102)VGFT(0.003)PPT(0.001)S(0.001)LT(0.001)R 67.015 1.42E-05 35968000 1953.2 1397.6 1013.8 1080.5 2573.8 1819.6 1351.5 1590.8 1945.6 1635 TRUE FALSE FALSE 1724.248857 1440.658399 1068.609095 1124.56746 2383.935902 1784.894162 1403.627808 1771.890242 1865.401545 1625.274947 1.060896718 0.886409036 0.65749435 0.691924442 1.4667893 1.098210592 0.863624835 1.090209533 1.147745215 1 10.66646808 TVSSPPT(ph)SPRPGSAATVSASTSNIIPPR ddPTM_HeLa_CUDC101_4h_R1 1 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 1 0 T(0.003)VS(0.008)S(0.031)PPT(0.46)S(0.46)PRPGS(0.034)AAT(0.003)VS(0.001)ASTSNIIPPR 63.701 0.0017272 110130000 575.44 526.58 461.31 490.3 676.59 586.23 460.9 472.36 462.02 568.4 TRUE FALSE FALSE 507.9877955 542.8033056 486.249814 510.2965533 626.6793037 575.0486395 478.6770674 526.1315531 442.97534 565.0191315 0.899063 0.960681286 0.860589999 0.903149159 1.109129353 1.01775074 0.847187362 0.931174758 0.784000603 1 9.142155908 YQQGDFGYCPR ddPTM_HeLa_CUDC101_4h_R1 1 YQQGDFGYCPR 11 0 Q5SRQ6;P67870;Q5SRQ3;N0E472;A0A0G2JM12 Q5SRQ6 CSNK2B;CSNK2B-LY6G5B-1181;CSNK2B-LY6G5B--991 Casein kinase II subunit beta 0 0 117.02 0.0013651 0 585.81 561.99 698.9 600.19 672.66 837.48 856.52 714.73 585.02 754.9 FALSE FALSE TRUE 517.1422398 579.3042458 736.6846481 624.6683424 623.0392119 821.5064643 889.5562633 796.0919742 560.905228 750.4098212 0.689146417 0.771983827 0.981709763 0.832436257 0.830265269 1.094743753 1.185427267 1.060876273 0.747465201 1 9.551534899 -5.22519062 5.466308982 0.850640743 1.124523837 0.636823302 0.09561469 0.128622168 10.62956204 0.017858823 0.045629791 5.95E-06 5.22519062 0.273883094 YQVSSLCGTDNEDKITTGK(ac)R ddPTM_HeLa_CUDC101_4h_R1 1 YQVSSLCGTDNEDKITTGKR 20 2 Q9UBW7 Q9UBW7 ZMYM2 Zinc finger MYM-type protein 2 0 1 YQVSSLCGTDNEDKITTGK(1)R 188.09 1.44E-12 4567200 810.1 1073 1089.2 1082.8 1228 1010.4 1281.2 1252.3 616.52 301.06 FALSE TRUE FALSE 715.141306 1106.057858 1148.085447 1126.961264 1137.412887 991.1283034 1330.616313 1394.85677 591.1067847 299.2692817 2.389624829 3.695861639 3.83629566 3.765709791 3.800633596 3.311827722 4.446217485 4.660875189 1.975166917 1 8.225300392 -7.687132398 0.471396008 0.968856146 4.253798125 0.818859399 0.465262736 0.185222703 0.104127296 0.221232403 0.177454825 2.06E-08 7.687132398 3.284941979 YRDFDIPAEFSGVWR ddPTM_HeLa_CUDC101_4h_R1 1 YRDFDIPAEFSGVWR 15 1 O15247 O15247 CLIC2 Chloride intracellular channel protein 2 0 0 115.1 0.0019694 4687100 1819.6 1561.5 1742.9 1637.2 1827.9 1661.3 1597.5 1646.3 1670.9 2020.3 FALSE FALSE TRUE 1606.309246 1609.607964 1837.126446 1703.972093 1693.059459 1629.61347 1659.11611 1833.708137 1602.024795 2008.283166 0.799842011 0.801484567 0.914774608 0.848472029 0.843038217 0.811446064 0.826136542 0.913072503 0.797708621 1 10.97174699 -9.361578943 1.029514931 1.002113273 0.841012595 0 0.072952833 0.245675525 0.456317609 0.02937701 0.007241635 4.35E-10 9.361578943 -0.161100679 TWSAPYDGERPS(ph)PEPSPFGSR ddPTM_HeLa_CUDC101_4h_R1 2 TWSAPYDGERPSPEPSPFGSR 21 1 Q8N612;Q8N612-2;E9PJK5;Q8N612-3 Q8N612 FAM160A2 FTS and Hook-interacting protein 1 0 TWSAPY(0.009)DGERPS(0.903)PEPS(0.085)PFGS(0.001)R;TWSAPY(0.01)DGERPS(0.937)PEPS(0.051)PFGS(0.002)R ; 73.058 0.0021609 42745000 2102.09 2258.85 1950.96 1948.71 2008.48 1647.87 1818.17 2146.23 2016.96 1871.37 TRUE FALSE FALSE 1855.686197 2328.442491 2056.434799 2028.186817 1860.318432 1616.439625 1888.297426 2390.548148 1933.820055 1860.239008 0.997552567 1.251689961 1.105468055 1.09028292 1.000042696 0.868941904 1.015083233 1.285075809 1.03955462 1 10.86127228 YREQEYR ddPTM_HeLa_CUDC101_4h_R1 1 YREQEYR 7 1 Q13427;E9PG73 Q13427 PPIG Peptidyl-prolyl cis-trans isomerase G 0 0 90.777 0.040485 1639800 641.16 252.21 496.4 630.33 634.38 499.18 539.99 238.63 438.45 324.93 FALSE FALSE TRUE 566.0041967 259.9802912 523.2368855 656.0375819 587.5830513 489.6589732 560.8175952 265.7946746 420.3769054 322.9973019 1.752349612 0.804899266 1.61994197 2.031093071 1.819157769 1.515984717 1.736291888 0.822900603 1.301487359 1 8.335378303 -9.486987277 1.033301983 0.974838972 1.551469388 0.09544622 0.393706389 0.729428473 1.289657449 0.330164364 0.067365588 3.26E-10 9.486987277 0.576630416 YRHDENILESEPIVYR ddPTM_HeLa_CUDC101_4h_R1 1 YRHDENILESEPIVYR 16 1 Q96F86;H3BSQ0;H3BPN4 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 0 0 91.076 0.0046355 7048400 2349 2422.4 2097.9 2301.2 2449.2 2544.3 2575 2225.7 2458.2 2932.8 FALSE FALSE TRUE 2073.653781 2497.031273 2211.31882 2395.052883 2268.527395 2495.771717 2674.318613 2479.064691 2356.871956 2915.355575 0.711286746 0.856510024 0.758507415 0.82153028 0.778130604 0.856077982 0.91732159 0.850347283 0.80843379 1 11.50945614 -9.536655089 1.302850994 0.999836345 0.807889161 0 0.080361829 0.266628618 0.811636164 0.044974952 0.010755574 2.91E-10 9.536655089 -0.191947184 TYGGDTGS(ph)PEISFTK ddPTM_HeLa_CUDC101_4h_R1 1 TYGGDTGSPEISFTK 15 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 0 TYGGDT(0.296)GS(0.6)PEIS(0.104)FTK 174.52 4.43E-07 24366000 2384.9 1747 1426.4 1816.6 2185.4 1809.3 1606.3 1957.7 1755.6 1811.7 TRUE FALSE FALSE 2105.345637 1800.822999 1503.515499 1890.6888 2024.187396 1774.790617 1668.255529 2180.556655 1683.233425 1800.923928 1.169036407 0.999943957 0.834857861 1.049843789 1.123971626 0.985488942 0.926333147 1.210798869 0.934649931 1 10.81452153 TYSS(ph)SGSSGGSHPSSR ddPTM_HeLa_CUDC101_4h_R1 1 TYSSSGSSGGSHPSSR 16 0 H0Y6B5;B7Z836;E7EW77;E7EP65;A0A0C4DG21;F8WAL6;Q9NYB9-3;Q9NYB9-2;Q9NYB9-4;Q9NYB9 H0Y6B5 ABI2 Abl interactor 2 1 0 T(0.011)YS(0.108)S(0.306)S(0.306)GS(0.267)S(0.001)GGSHPSSR 61.684 0.034944 625110 0 0 0 138.32 165.46 0 0 63.298 72.605 65.935 TRUE FALSE FALSE 0 0 0 143.9612875 153.2543454 0 0 70.50358846 69.61219117 65.54281569 0 0 0 2.19644649 2.338232556 0 0 1.075687514 1.062087285 1 6.034365747 YRPGTVALR ddPTM_HeLa_CUDC101_4h_R1 2 YRPGTVALR 9 1 K7EK07;P84243;K7EMV3;A0A590UJJ6;B4DEB1;K7ES00;K7EP01;Q6NXT2;Q71DI3;P68431;Q5TEC6;Q16695 K7EK07;Q71DI3 H3F3B;H3F3A;H3F3C;HIST2H3A;HIST1H3A;HIST2H3PS2;HIST3H3 Histone H3;Histone H3.3;Histone H3.3C;Histone H3.2;Histone H3.1;Histone H3.1t 0 0 ; ; 93.598 0.029539 70456000 6632.9 6143.4 3693.1 6747 3853.5 5586.5 4576.4 3585.6 2177.33 2148.32 FALSE FALSE TRUE 5855.401517 6332.670872 3892.760157 7022.171823 3569.234982 5479.94682 4752.913281 3993.770211 2087.579536 2135.541697 2.741881146 2.965369808 1.822844369 3.288239154 1.671348767 2.566068753 2.2256242 1.870143868 0.977540986 1 11.06038635 -9.324074774 1.021047572 0.990729235 2.418381579 0.558796018 0.496507423 0.315815668 0.583621299 0.328212106 0.084642796 4.74E-10 9.324074774 1.427652344 VALS(ph)SETEVALAR ddPTM_HeLa_CUDC101_4h_R1 1 VALSSETEVALAR 13 0 E7EVA0;P27816;P27816-6;P27816-2 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 VALS(0.568)S(0.397)ET(0.035)EVALAR 83.226 0.026483 6189900 1952.1 1303.3 1666 1451.1 1604.9 1313.5 1721 1615.1 1679.1 1693.6 TRUE FALSE FALSE 1723.277797 1343.453128 1756.068999 1510.28213 1486.509724 1288.447176 1787.379546 1798.956456 1609.886787 1683.526392 1.023611988 0.797999446 1.043089676 0.897094419 0.882973817 0.76532639 1.061687868 1.068564452 0.956258717 1 10.71727062 VAS(ph)ETHSEGS(ph)EYEELPK ddPTM_HeLa_CUDC101_4h_R1 1 VASETHSEGSEYEELPK 17 0 Q5JSZ5;A0A494C0D3 Q5JSZ5 PRRC2B Protein PRRC2B 2 0 VAS(0.764)ET(0.236)HS(0.07)EGS(0.93)EYEELPK 189.52 2.71E-10 8930500 2432.8 2757.5 2436.1 1800.4 3011.4 2530.9 2177.3 2154.5 2580.8 2539.2 TRUE FALSE FALSE 2147.630872 2842.455307 2567.802935 1873.828094 2789.255022 2482.627299 2261.27919 2399.759571 2474.418332 2524.096725 0.850851257 1.126127726 1.017315584 0.742375708 1.105050767 0.983570588 0.895876599 0.950739941 0.980318348 1 11.30155148 VAS(ph)SPVMVSNPATR ddPTM_HeLa_CUDC101_4h_R1 1 VASSPVMVSNPATR 14 0 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 0 VAS(0.5)S(0.5)PVMVSNPATR 188.63 3.33E-11 101680000 2218.8 2266.7 2074.5 1844.2 2356.8 2087.2 2147.3 1669.4 2335.8 2155.4 TRUE FALSE FALSE 1958.715627 2336.53434 2186.653745 1919.414447 2182.943559 2047.390138 2230.12208 1859.437748 2239.517335 2142.579585 0.914185705 1.090523944 1.020570606 0.895842778 1.018838962 0.955572503 1.040858457 0.867850026 1.045243477 1 11.06513308 VAVNALAVGEPGTAS(ph)KPASPIGGPTQEEK ddPTM_HeLa_CUDC101_4h_R1 1 VAVNALAVGEPGTASKPASPIGGPTQEEK 29 1 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;Q96L91-4 Q96L91-3 EP400 E1A-binding protein p400 1 0 VAVNALAVGEPGT(0.233)AS(0.664)KPAS(0.102)PIGGPT(0.001)QEEK 87.196 3.70E-07 21674000 1783.3 1514.6 1026.5 1128.7 1112.7 1446 1135.9 884.38 1081.8 1031 TRUE FALSE FALSE 1574.264277 1561.263031 1081.995695 1174.733265 1030.618338 1418.419959 1179.712044 985.0542444 1037.207746 1024.867566 1.536066053 1.523380271 1.055741962 1.146229331 1.005611234 1.384003169 1.151087304 0.961152716 1.012040756 1 10.00122178 YRVPDVLVADPPIAR ddPTM_HeLa_CUDC101_4h_R1 1 YRVPDVLVADPPIAR 15 1 Q14697;Q14697-2;F5H6X6 Q14697 GANAB Neutral alpha-glucosidase AB 0 0 114.21 0.0021805 10413000 1357 1148.9 1233.3 1414.7 1635 1551.7 1332.8 1317.1 1446.7 1495.8 FALSE FALSE TRUE 1197.934517 1184.296247 1299.975929 1472.397581 1514.389307 1522.103908 1384.206542 1467.03334 1387.066414 1486.902915 0.805657521 0.796485255 0.874284336 0.990244599 1.018485667 1.023674036 0.930932698 0.986636939 0.932856073 1 10.53809474 -6.254041028 23.43813654 0.893423395 0.990167469 0.443626048 0.059854411 283.5541752 898301.9942 0.01295208 0.021176078 5.57E-07 6.254041028 0.096744074 VCDKAFKCYSHLAQHT(ph)RIHT(ph)GEK ddPTM_HeLa_CUDC101_4h_R1 1 VCDKAFKCYSHLAQHTRIHTGEK 23 3 P0CJ79 P0CJ79 ZNF888 Zinc finger protein 888 2 0 VCDKAFKCY(0.081)S(0.086)HLAQHT(0.907)RIHT(0.926)GEK 41.136 0.0032454 0 201.88 0 135.46 0 63.408 143.6 251.72 148.92 171.17 157.9 TRUE FALSE FALSE 178.2159324 0 142.7833773 0 58.73051817 140.8610693 261.4289247 165.8724508 164.1143002 156.9608038 1.135416793 0 0.909675371 0 0.374173149 0.897428312 1.665568208 1.056776258 1.045575049 1 7.294260524 VDIEAPDVS(ph)LEGPEGK ddPTM_HeLa_CUDC101_4h_R1 1 VDIEAPDVSLEGPEGK 16 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 0 VDIEAPDVS(1)LEGPEGK 144.97 1.68E-05 0 1299.6 1142.1 838.73 1005.5 1126.6 964.68 1035.3 1167.6 1020.6 1165.2 TRUE FALSE FALSE 1147.262858 1177.286747 884.0742808 1046.508636 1043.492963 946.2803363 1075.231868 1300.514864 978.530436 1158.269339 0.990497477 1.016418814 0.763271764 0.90351061 0.900907006 0.8169778 0.928309014 1.122808678 0.844821151 1 10.17775505 VDLTLDPDTAHPALMLS(ph)PDRR ddPTM_HeLa_CUDC101_4h_R1 2 VDLTLDPDTAHPALMLSPDRR 21 1 H0YAD6;D6REK2;Q8WV44-3;Q8WV44-2;Q8WV44 H0YAD6 TRIM41 E3 ubiquitin-protein ligase TRIM41 1 0 VDLTLDPDTAHPALMLS(1)PDRR;VDLTLDPDTAHPALMLS(1)PDRR ; 105.72 2.24E-05 19764900 3712.1 3526.3 3086 3156.4 3884.2 3159.5 3125.5 2852.1 3670.7 3320.6 TRUE FALSE FALSE 3276.973265 3634.941123 3252.838495 3285.131635 3597.670304 3099.237802 3246.051582 3176.771535 3519.392192 3300.848924 0.992766813 1.101214023 0.985455127 0.99523841 1.08992274 0.938921433 0.983399016 0.962410461 1.066208201 1 11.68862139 VEEESTGDPFGFDS(ph)DDESLPVSSK ddPTM_HeLa_CUDC101_4h_R1 4 VEEESTGDPFGFDSDDESLPVSSK 24 0 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 1 0 VEEESTGDPFGFDS(0.998)DDES(0.001)LPVSSK;VEEESTGDPFGFDS(0.988)DDES(0.012)LPVSSK;VEEESTGDPFGFDS(0.831)DDES(0.158)LPVS(0.008)S(0.003)K;VEEESTGDPFGFDS(0.981)DDES(0.019)LPVSSK ;;; 128.89 7.39E-09 28980300 48051.5 40872.4 37640.1 38651.4 44510.2 42716.3 38974.3 38236.1 44578 40612.1 TRUE FALSE FALSE 42418.97601 42131.6302 39675.03766 40227.77116 41226.77122 41901.55775 40477.55181 42588.74307 42740.47597 40370.53742 1.050740929 1.043623219 0.982772096 0.996463603 1.021209373 1.0379242 1.002650804 1.054946151 1.058704657 1 15.30101517 VEGIYTYSLS(ph)PSK ddPTM_HeLa_CUDC101_4h_R1 1 VEGIYTYSLSPSK 13 0 O95197-7;O95197-2;O95197 O95197-7 RTN3 Reticulon-3 1 0 VEGIYT(0.002)YS(0.082)LS(0.908)PS(0.008)K 98.592 0.010596 11861000 3106.4 2561.2 1750.6 2566.5 2016.3 2650.7 2152.8 2311.6 1892.6 2295.7 TRUE FALSE FALSE 2742.272501 2640.107536 1845.242731 2671.172963 1867.561566 2600.142314 2235.834217 2574.7432 1814.586227 2282.045074 1.201673241 1.156904202 0.808591711 1.170517179 0.818371901 1.139391304 0.979750243 1.128261325 0.795157925 1 11.15611157 VEMYS(ph)GS(ph)DDDDDFNKLPK ddPTM_HeLa_CUDC101_4h_R1 1 VEMYSGSDDDDDFNKLPK 18 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 2 0 VEMY(0.048)S(0.962)GS(0.99)DDDDDFNKLPK 69.763 0.021478 55680000 2510.5 2660.8 2066.6 1975 2472 2228.8 2187.6 2127.3 2278.6 2401.9 TRUE FALSE FALSE 2216.222996 2742.776094 2178.326647 2055.549037 2289.645485 2186.289353 2271.976465 2369.463233 2184.675144 2387.613392 0.928216856 1.148752182 0.912344794 0.860922059 0.95896827 0.9156798 0.951567985 0.9923982 0.915003723 1 11.22135354 VEPAS(ph)PPYYSEK ddPTM_HeLa_CUDC101_4h_R1 2 VEPASPPYYSEK 12 0 E7EU07;E7EUD1;A0A499FIV4;E9PFX5;A0A494C0D9;E9PFV2;P37231-3;P37231-2;P37231 E7EU07 PPARG Peroxisome proliferator-activated receptor gamma 1 0 VEPAS(0.991)PPYYS(0.009)EK;VEPAS(0.998)PPY(0.001)YS(0.001)EK ; 115.24 0.00043002 11868000 3464.7 3149.7 3864.6 3909.6 3978.1 3591.1 3452.4 2507.4 2802.2 3506.4 TRUE FALSE FALSE 3058.573118 3246.738524 4073.531966 4069.050387 3684.643488 3522.605751 3585.560224 2792.832281 2686.69213 3485.543777 0.877502425 0.931486945 1.168693388 1.167407626 1.057121564 1.010633054 1.028694647 0.801261571 0.770810038 1 11.76716803 VEQMPQAS(ph)PGLAPR ddPTM_HeLa_CUDC101_4h_R1 4 VEQMPQASPGLAPR 14 0 Q8N3F8;H0Y6J8 Q8N3F8 MICALL1 MICAL-like protein 1 1 0 VEQMPQAS(1)PGLAPR;VEQMPQAS(1)PGLAPR;VEQMPQAS(1)PGLAPR;VEQMPQAS(1)PGLAPR ;;; 178.85 9.16E-08 340871000 8830.3 7804.1 8064.6 8257.3 9206.7 8170 6739.4 7200.7 8707.3 8898.2 TRUE FALSE FALSE 7795.22562 8044.535071 8500.59667 8594.068385 8527.540083 8014.170862 6999.340916 8020.398582 8348.381409 8845.273111 0.88128716 0.909472774 0.961032697 0.971600117 0.964078777 0.906039956 0.791308626 0.906744029 0.943824041 1 13.11069097 VESLESLYFT(ph)PIPAR ddPTM_HeLa_CUDC101_4h_R1 1 VESLESLYFTPIPAR 15 0 A0A087WY61;Q14980-2;Q14980;Q14980-5;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 0 VESLESLYFT(1)PIPAR 130.98 0.00020171 0 608.94 520.52 663.33 578.1 663.3 780.03 540.54 315.29 722.23 567.99 TRUE FALSE FALSE 537.5609763 536.5566042 699.1916263 601.6774168 614.3696805 765.1522274 561.3888089 351.1813392 692.4593737 564.6115702 0.952089905 0.950311032 1.238358658 1.065648401 1.088128039 1.3551834 0.994292073 0.6219875 1.226434969 1 9.141114883 VFCVEEEDS(ph)ESSLQKR ddPTM_HeLa_CUDC101_4h_R1 2 VFCVEEEDSESSLQKR 16 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 0 VFCVEEEDS(0.744)ES(0.128)S(0.128)LQKR;VFCVEEEDS(0.953)ES(0.024)S(0.024)LQKR ; 81.854 0.0075183 30082000 1235.49 1012.85 1406.69 1227.07 1354.1 1097.18 1107.93 1246.95 1295.64 1030.26 TRUE FALSE FALSE 1090.667735 1044.054708 1482.739916 1277.115218 1254.210741 1076.25312 1150.663231 1388.897748 1242.233171 1024.131968 1.064967963 1.019453294 1.447801615 1.247022121 1.224657349 1.050893004 1.123549765 1.356170681 1.212962011 1 10.00018591 VFLQDGPARPAS(ph)PEAGNTLR ddPTM_HeLa_CUDC101_4h_R1 1 VFLQDGPARPASPEAGNTLR 20 1 Q9UJX6-2;Q9UJX6 Q9UJX6-2 ANAPC2 Anaphase-promoting complex subunit 2 1 0 VFLQDGPARPAS(0.968)PEAGNT(0.032)LR 52.926 0.026672 16913000 1240.9 1045.8 1355.5 1075.9 1461.4 1316.7 1114.5 1104.3 1314 1358.1 TRUE FALSE FALSE 1095.443583 1078.019858 1428.78243 1119.779852 1353.595434 1291.586141 1157.486638 1230.009048 1259.836364 1350.021961 0.811426491 0.798520239 1.058340139 0.829453064 1.002646974 0.956714912 0.857383563 0.911102992 0.933196941 1 10.39876716 VGDTVRVPVS(ph)FEAMPMPEVTWLK ddPTM_HeLa_CUDC101_4h_R1 1 VGDTVRVPVSFEAMPMPEVTWLK 23 1 Q86VF2-2;Q86VF2;Q86VF2-5 Q86VF2-2 IGFN1 Immunoglobulin-like and fibronectin type III domain-containing protein 1 1 0 VGDT(0.018)VRVPVS(0.978)FEAMPMPEVT(0.003)WLK 44.729 0.0029509 0 168.57 294.01 66.613 320.28 172.75 233.84 203.54 125.15 193 175.26 TRUE FALSE FALSE 148.8104801 303.0680996 70.21430027 333.3424028 160.0065767 229.3798916 211.390606 139.3965701 185.0444583 174.2175457 0.854164714 1.739595736 0.403026572 1.913368722 0.918429748 1.316629107 1.213371507 0.800129341 1.062145937 1 7.444746117 VGGS(ph)DEEASGIPSR ddPTM_HeLa_CUDC101_4h_R1 4 VGGSDEEASGIPSR 14 0 H7C446;A8MV53;A0A0A6YYI3;A0A0B4J1V8;Q9NQ55-2;Q9NQ55;Q9NQ55-3 H7C446 PPAN;PPAN-P2RY11 Suppressor of SWI4 1 homolog 1 0 VGGS(1)DEEASGIPSR;VGGS(0.995)DEEAS(0.002)GIPS(0.003)R;VGGS(1)DEEASGIPSR;VGGS(0.999)DEEAS(0.001)GIPSR ;;; 216.27 2.46E-24 1415052000 2899.82 2806.74 3506.49 2895.48 3066.01 3076.67 2990.52 3084.17 3453.13 3314.94 TRUE FALSE FALSE 2559.907495 2893.212333 3696.061456 3013.57019 2839.836551 3017.987646 3105.865358 3435.259446 3310.79052 3295.222589 0.776854196 0.878002094 1.121642425 0.914527049 0.861804165 0.915867613 0.94253583 1.042496934 1.004724394 1 11.68616021 VGLSPDSPAGDRNS(ph)VGSEGSVGSIR ddPTM_HeLa_CUDC101_4h_R1 1 VGLSPDSPAGDRNSVGSEGSVGSIR 25 1 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 0 VGLSPDS(0.217)PAGDRNS(0.651)VGS(0.11)EGS(0.013)VGS(0.01)IR 61.111 0.0027776 72440000 1655.2 1481.8 1541.2 1539.4 1659.6 1383.2 1470.9 1360.6 1790.3 1482.6 TRUE FALSE FALSE 1461.179965 1527.452502 1624.521934 1602.183386 1537.174614 1356.817765 1527.633106 1515.485204 1716.503076 1473.781429 0.991449571 1.036417254 1.102281452 1.087124152 1.043013967 0.920637035 1.036539798 1.028297123 1.16469311 1 10.52530686 VGLVEDSPSTAGDGDDSPVVSLTVPSTS(ph)PPSSSGLSR ddPTM_HeLa_CUDC101_4h_R1 2 VGLVEDSPSTAGDGDDSPVVSLTVPSTSPPSSSGLSR 37 0 Q6VY07-2;Q6VY07;B4DF77 Q6VY07-2 PACS1 Phosphofurin acidic cluster sorting protein 1 1 0 VGLVEDSPSTAGDGDDS(0.002)PVVS(0.005)LT(0.002)VPS(0.026)T(0.152)S(0.758)PPS(0.04)S(0.007)S(0.007)GLS(0.002)R;VGLVEDSPSTAGDGDDSPVVSLTVPS(0.084)T(0.119)S(0.763)PPS(0.026)S(0.003)S(0.003)GLSR ; 104.48 3.49E-14 21482000 5300.3 4653.8 4605.9 3611 5396.4 4805 4464.2 3600.27 4885.6 4818.1 TRUE FALSE FALSE 4679.006869 4797.178062 4854.908886 3758.272188 4998.318323 4713.352631 4636.385689 4010.110184 4684.2135 4789.441727 0.976942019 1.00161529 1.013669059 0.784699429 1.043611888 0.98411316 0.968043032 0.837281339 0.978029125 1 12.22564179 YSDFEWLKNELER ddPTM_HeLa_CUDC101_4h_R1 2 YSDFEWLKNELER 13 1 A0A087X0R6;Q9UMY4-3;Q9UMY4;Q9UMY4-1 A0A087X0R6 SNX12 Sorting nexin-12 0 0 ; ; 156.01 0.00011268 21389000 3444.4 4251 4395.9 4116.6 6145.6 4484.7 4537.9 5476.5 5113.2 4735.5 FALSE FALSE TRUE 3040.652653 4381.968271 4633.555651 4284.492741 5692.251332 4399.16182 4712.928323 6099.922623 4902.431732 4707.333035 0.645939565 0.930881295 0.984327137 0.910174128 1.209230638 0.934533798 1.001188632 1.295834091 1.041445697 1 12.20069421 -6.321808043 1.333873052 0.8361445 1.086497071 0.199402059 0.148523666 0.393020172 1.377255612 0.027985011 0.05192788 4.77E-07 6.321808043 0.250352572 YSDPGPVYDCLVWHDGEVWR ddPTM_HeLa_CUDC101_4h_R1 2 YSDPGPVYDCLVWHDGEVWR 20 0 A0A494C1B8;A0A494C0U1;Q5VZU9;P29144 A0A494C1B8 TPP2 Tripeptidyl-peptidase 2 0 0 ; ; 142.58 2.25E-05 15985300 6007.2 5678 5049 5395.4 5221.8 5557.9 5079.6 4182.7 6047.6 1750.33 FALSE FALSE TRUE 5303.045122 5852.93245 5321.964212 5615.447733 4836.598217 5451.892318 5275.521874 4658.841661 5798.315368 1739.918959 3.047869037 3.363910956 3.058742583 3.227419129 2.779783617 3.133417386 3.032050341 2.677619918 3.332520367 1 10.7648044 -9.092908035 0.733121584 0.907226246 3.062872019 0 0.739751725 0.141268811 0.129876827 0.179274499 0.045563225 8.07E-10 9.092908035 2.155645774 VGST(ph)ENIK ddPTM_HeLa_CUDC101_4h_R1 1 VGSTENIK 8 0 E7EVA0;P27816;P27816-6;P27816-2;P27816-5;H0Y2V1;H7C4C5;F8W9U4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 0 VGS(0.246)T(0.754)ENIK 117.71 0.038875 346110000 5186.8 4564 4885.1 4770.8 4271.3 4411.4 4696.6 5265.7 4416.7 5187.6 TRUE FALSE FALSE 4578.811167 4704.61143 5149.203283 4965.373845 3956.214709 4327.259895 4877.749435 5865.126003 4234.641757 5156.743924 0.887926807 0.912322097 0.998537713 0.962889358 0.767192392 0.839145778 0.94589716 1.137370032 0.821185193 1 12.33224469 VIPAKS(ph)PPPPTHSTQLGAPSR ddPTM_HeLa_CUDC101_4h_R1 1 VIPAKSPPPPTHSTQLGAPSR 21 1 Q14814-4;Q14814;Q14814-6;Q14814-3;Q14814-5;Q14814-2 Q14814-4 MEF2D Myocyte-specific enhancer factor 2D 1 0 VIPAKS(0.983)PPPPT(0.013)HS(0.002)T(0.001)QLGAPSR 44.047 0.039147 22013000 813.52 540.68 321.3 562.97 1161.5 752.32 784.64 428.83 765.17 638.92 TRUE FALSE FALSE 718.1604188 557.3377099 338.6704499 585.93035 1075.818459 737.9707495 814.9038276 477.6462738 733.6293687 635.1196754 1.130748183 0.877531797 0.533238794 0.922551092 1.69388306 1.161939675 1.2830713 0.75205712 1.155104144 1 9.310884654 VLNTSSLESATDEAGS(ph)PLAAAAAAAAAER ddPTM_HeLa_CUDC101_4h_R1 1 VLNTSSLESATDEAGSPLAAAAAAAAAER 29 0 H0Y764;A0A494C1V1;Q6ZNJ1-2;Q6ZNJ1-3;Q6ZNJ1 H0Y764 NBEAL2 Neurobeachin-like protein 2 1 0 VLNTSSLESATDEAGS(1)PLAAAAAAAAAER 67.814 0.00019389 0 115.64 371.83 178.28 201.41 202.79 155.77 0 250.61 149.91 132.87 TRUE FALSE FALSE 102.0848545 383.2856416 187.9183561 209.6243704 187.8305857 152.7989468 0 279.1384294 143.7306463 132.0796833 0.772903538 2.901927321 1.422765041 1.587105337 1.422100515 1.156869421 0 2.113409287 1.088211621 1 7.045264756 YSEEANNLIEECEQAER ddPTM_HeLa_CUDC101_4h_R1 2 YSEEANNLIEECEQAER 17 0 G3V5B3;G3V3E6;Q96HE7 G3V5B3 ERO1L ERO1-like protein alpha 0 0 ; ; 190.86 1.01E-10 7734200 1778.8 1502.9 1585.63 2046.02 1586.73 1876.57 1627.59 1469.09 1671.92 1558.81 FALSE FALSE TRUE 1570.29176 1549.202568 1671.353954 2129.465539 1469.680089 1840.777554 1690.366692 1636.325267 1603.00275 1549.538129 1.013393431 0.999783444 1.078614281 1.374258238 0.948463327 1.18795241 1.090884219 1.056008392 1.034503585 1 10.59762254 -6.577789158 5.945397269 1.006907169 1.131945123 0.232218535 0.102017768 0.192551226 14.46928514 0.014795976 0.021078205 2.64E-07 6.577789158 0.125037954 VLSST(ph)SEEDEPGVVK ddPTM_HeLa_CUDC101_4h_R1 2 VLSSTSEEDEPGVVK 15 0 Q8NI08-2;Q8NI08;Q8NI08-7;Q8NI08-4;Q8NI08-3 Q8NI08-2 NCOA7 Nuclear receptor coactivator 7 1 0 VLS(0.035)S(0.104)T(0.431)S(0.431)EEDEPGVVK;VLS(0.093)S(0.068)T(0.419)S(0.419)EEDEPGVVK ; 128.64 0.0010105 15657100 7503.2 7712.9 7445.5 7167.4 7883.2 7929.2 6897.7 7427.9 8402.7 8165.7 TRUE FALSE FALSE 6623.68627 7950.525307 7848.026251 7459.717552 7301.672042 7777.963721 7163.7466 8273.462111 8056.337149 8117.130053 0.816013323 0.97947492 0.96684742 0.919009244 0.899538629 0.958215979 0.882546732 1.019259524 0.992510542 1 12.98675401 VLVQNAAGS(ph)QEK ddPTM_HeLa_CUDC101_4h_R1 1 VLVQNAAGSQEK 12 0 Q9Y490 Q9Y490 TLN1 Talin-1 1 0 VLVQNAAGS(1)QEK 157.5 0.00016442 4424800 2092.2 2041.4 1861.3 1681.1 1875.2 2075.3 1638.2 1989.2 1881.1 2026.5 TRUE FALSE FALSE 1846.955488 2104.293114 1961.927508 1749.662524 1736.870232 2035.71711 1701.385923 2215.642487 1803.560262 2014.446288 0.916855167 1.044601252 0.973928925 0.868557546 0.862207269 1.010559141 0.844592349 1.099876676 0.895313155 1 10.97616762 VMS(ph)SPSAMK ddPTM_HeLa_CUDC101_4h_R1 1 VMSSPSAMK 9 0 Q99728-3;Q99728-2;Q99728;A0A494C142 Q99728-3 BARD1 BRCA1-associated RING domain protein 1 1 0 VMS(0.615)S(0.383)PS(0.003)AMK 107.45 0.011486 11415000 2705 2067.1 2427.5 2603.2 2990.6 2189.7 1823 2553.1 2377.6 2477.2 TRUE FALSE FALSE 2387.924001 2130.784901 2558.737993 2709.369748 2769.989396 2147.935121 1893.313721 2843.734584 2279.594322 2462.465504 0.969728915 0.865305482 1.039095974 1.100267087 1.124884548 0.872270136 0.768869134 1.154832252 0.925736551 1 11.2658878 VMVEMVCLHVIS(ph)LMEALQECNS(ph)TIFVK ddPTM_HeLa_CUDC101_4h_R1 1 VMVEMVCLHVISLMEALQECNSTIFVK 27 0 G3V2U4;Q9P2D8-2;Q9P2D8;Q9P2D8-3 G3V2U4 UNC79 Protein unc-79 homolog 2 0 VMVEMVCLHVIS(1)LMEALQECNS(0.5)T(0.5)IFVK 41.76 0.0027429 0 327.68 370.84 303.71 186.59 317.98 278.59 322.23 195.48 375.54 301.94 TRUE FALSE FALSE 289.2698471 382.2651408 320.1294813 194.1999467 294.5232489 273.2763599 334.658519 217.732653 360.0600822 300.1440475 0.963770062 1.273605604 1.066586141 0.647022483 0.981272997 0.910484023 1.114993024 0.72542719 1.199624265 1 8.229511246 YSGLTASSK(ac)K ddPTM_HeLa_CUDC101_4h_R1 2 YSGLTASSKK 10 1 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 0 1 ; YSGLTASSK(1)K;YSGLTASSK(1)K 160.53 0.00061587 5430500 3495.1 2693.1 1753.14 4652.7 3872.7 4405.7 3772 3598.3 532.09 384.36 FALSE TRUE FALSE 3085.409676 2776.071219 1847.920051 4842.457217 3587.018637 4321.668613 3917.487304 4007.915927 510.157025 382.0738096 8.075428356 7.265798254 4.836552532 12.67414069 9.388287148 11.3110831 10.25322125 10.48989966 1.335231602 1 8.577707557 -8.411549822 0.336953572 4.80E-13 10.99796798 0.795170689 1.746106396 0.644747176 0.159270504 2.815415489 1.071087459 3.88E-09 8.411549822 10.99796798 VNEEKDGPIS(ph)PK ddPTM_HeLa_CUDC101_4h_R1 1 VNEEKDGPISPK 12 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 0 VNEEKDGPIS(1)PK 118.52 0.01815 12298000 2263.6 1947.8 1993.5 2092 1850.4 2816.6 2124.8 2084.4 2010.8 2504.5 TRUE FALSE FALSE 1998.264239 2007.809409 2101.27464 2177.320802 1713.899679 2762.878048 2206.754248 2321.679671 1927.913973 2489.603123 0.802643691 0.806477704 0.844019925 0.874565421 0.688422851 1.109766461 0.886387966 0.932550112 0.774386068 1 11.28170006 VRVELSNGEK(ac)R ddPTM_HeLa_CUDC101_4h_R1 2 VRVELSNGEKR 11 2 P84103;P84103-2 P84103 SRSF3 Serine/arginine-rich splicing factor 3 0 1 ; VRVELSNGEK(1)R;VRVELSNGEK(1)R 101.71 0.015199 4114100 1682.69 977.31 900.48 1120.54 1635.22 1552.47 1708.67 2189.3 1431.45 818.85 FALSE TRUE FALSE 1485.447629 1007.419763 949.1626726 1166.240465 1514.593078 1522.859221 1774.573974 2438.521063 1372.445025 813.9794438 1.824920322 1.237647671 1.166076957 1.432764026 1.860726447 1.87088167 2.180121363 2.995801775 1.686092979 1 9.668848551 -1 0.455713429 1.339451217 40.29404608 0.799062696 0.246918003 31.04134794 0.330960847 0.068077281 1138.517854 0.1 1 38.95459486 up VNFPENGFLS(ph)PDKLSLLEK ddPTM_HeLa_CUDC101_4h_R1 1 VNFPENGFLSPDKLSLLEK 19 1 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 1 0 VNFPENGFLS(0.978)PDKLS(0.022)LLEK 64.749 0.01292 186030000 213.56 410.74 284.14 222.96 279.81 419.14 189.91 188.72 184.07 230.43 TRUE FALSE FALSE 188.5268205 423.3944126 299.5014679 232.0532725 259.1689738 411.1456028 197.2348923 210.203122 176.4825567 229.0593921 0.823047764 1.848404506 1.307527559 1.013070324 1.131448797 1.794930123 0.861064419 0.917679559 0.770466363 1 7.839577909 VPGEDGTLPPTQGS(ph)PLR ddPTM_HeLa_CUDC101_4h_R1 3 VPGEDGTLPPTQGSPLR 17 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 0 VPGEDGTLPPT(0.103)QGS(0.897)PLR;VPGEDGTLPPT(0.146)QGS(0.854)PLR;VPGEDGTLPPT(0.029)QGS(0.971)PLR ;; 154.51 7.94E-05 80264000 2388.51 1979.24 1960.21 2048.09 2008.49 2261.77 2053.5 2005.14 2081.65 2128.73 TRUE FALSE FALSE 2108.532479 2040.218038 2066.184882 2131.619963 1860.327694 2218.630506 2132.704183 2233.397033 1995.843506 2116.068219 0.996438801 0.964155134 0.976426404 1.007349358 0.879143535 1.048468327 1.007861733 1.055446612 0.943184859 1 11.04717042 YSIAITWGGHHIPK ddPTM_HeLa_CUDC101_4h_R1 1 YSIAITWGGHHIPK 14 0 O75369-8;O75369-2;O75369-9;O75369;O75369-6;O75369-3;E7EN95;O75369-7;O75369-5;O75369-4 O75369-8 FLNB Filamin-B 0 0 92.19 0.0087506 690950 781.15 442.39 345.33 422.71 842.31 535.95 614.46 571.93 577.34 684.98 FALSE FALSE TRUE 689.5847811 456.0195115 363.9995844 439.9499409 780.1744694 525.7276467 638.159928 637.0361994 553.5418008 680.9057085 1.012746365 0.669724906 0.534581484 0.646124618 1.145789292 0.772100513 0.937222173 0.935571829 0.812949273 1 9.411311218 -7.290193905 23.34790747 1.006019154 0.806121636 0.079812563 0.174863063 344.0910201 279391.695 0.029261856 0.033466862 5.13E-08 7.290193905 -0.199897518 VPS(ph)PLTDEEGDFILIHHEDLR ddPTM_HeLa_CUDC101_4h_R1 1 VPSPLTDEEGDFILIHHEDLR 21 0 H0Y517;H7C1U3;Q5T0F9-3;Q5T0F9-2;Q5T0F9 H0Y517 CC2D1B Coiled-coil and C2 domain-containing protein 1B 1 0 VPS(0.933)PLT(0.067)DEEGDFILIHHEDLR 72.968 0.003186 2656100 769.42 905.82 696.19 729.56 961.13 670.41 780.56 729.52 936.51 740.22 TRUE FALSE FALSE 679.229754 933.7272405 733.8281373 759.3146102 890.2293547 657.6230462 810.6664607 812.565608 897.9066614 735.8171385 0.92309586 1.268966421 0.997296881 1.031933847 1.209851345 0.893731624 1.101722722 1.104303726 1.220285061 1 9.523203469 VPSGETPPS(ph)PSQEGEEGSGLSRPGEAGLGGQER ddPTM_HeLa_CUDC101_4h_R1 2 VPSGETPPSPSQEGEEGSGLSRPGEAGLGGQER 33 1 Q9P2Y4 Q9P2Y4 ZNF219 Zinc finger protein 219 1 0 VPS(0.006)GET(0.031)PPS(0.886)PS(0.075)QEGEEGS(0.001)GLSRPGEAGLGGQER;VPS(0.013)GET(0.012)PPS(0.879)PS(0.095)QEGEEGSGLSRPGEAGLGGQER ; 59.567 0.00049593 16308000 587.93 727.72 922.44 559.143 653.67 644.081 863.26 669.63 739.26 815.58 TRUE FALSE FALSE 519.0137366 750.1401906 972.3098966 581.9472684 605.4500664 631.796228 896.5562274 745.8579725 708.7873899 810.7288939 0.64018162 0.925266382 1.199303373 0.717807485 0.746797198 0.779294081 1.105864407 0.919984446 0.874259441 1 9.663075751 VPTANVS(ph)VVDLTCR ddPTM_HeLa_CUDC101_4h_R1 1 VPTANVSVVDLTCR 14 0 P04406;P04406-2;E7EUT5 P04406 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 1 0 VPTANVS(1)VVDLTCR 146.1 0.00034606 57204000 803.71 688.44 693.13 577.4 732.44 584.13 719.71 688.4 626.81 653.04 TRUE FALSE FALSE 709.5003321 709.6500204 730.6027044 600.9488677 678.4093604 572.9886935 747.4694558 766.7646734 600.9726265 649.155689 1.09295866 1.093189249 1.125466073 0.925739199 1.045064184 0.882667599 1.151448672 1.181172231 0.925775799 1 9.342420716 VQAYEEPSVAS(ph)SPNGK ddPTM_HeLa_CUDC101_4h_R1 4 VQAYEEPSVASSPNGK 16 0 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 0 VQAYEEPSVAS(0.5)S(0.5)PNGK;VQAYEEPSVAS(0.967)S(0.033)PNGK;VQAYEEPSVAS(0.904)S(0.096)PNGK;VQAYEEPSVAS(0.905)S(0.095)PNGK ;;; 247.5 1.00E-55 707996000 31068.4 26577.3 28736.4 27962.1 27711.2 29131.3 26883.8 26912.8 29882 27735.7 TRUE FALSE FALSE 27426.60925 27396.11511 30289.97671 29102.5153 25666.99998 28575.66899 27920.71717 29976.44437 28650.25131 27570.72682 0.994772805 0.993666772 1.098628154 1.055558509 0.930951155 1.036449607 1.012694274 1.087256225 1.039154735 1 14.75084968 VQDTS(ph)NTGLGEDIIHQLSK ddPTM_HeLa_CUDC101_4h_R1 2 VQDTSNTGLGEDIIHQLSK 19 0 Q8IWA0 Q8IWA0 WDR75 WD repeat-containing protein 75 1 0 VQDT(0.041)S(0.795)NT(0.164)GLGEDIIHQLSK;VQDT(0.234)S(0.654)NT(0.112)GLGEDIIHQLSK ; 197.47 3.95E-17 111173000 16604.7 10488.8 9791.2 9923.3 13487.8 13357.3 11523.5 10820.6 10947 10403.2 TRUE FALSE FALSE 14658.32224 10811.9475 10320.54189 10328.01507 12492.83187 13102.53176 11967.96526 12052.37337 10495.76003 10341.3213 1.417451582 1.04550929 0.997990642 0.998713294 1.208049871 1.26700751 1.157295562 1.16545778 1.014934138 1 13.33613291 VQEKPDS(ph)PGGSTQIQR ddPTM_HeLa_CUDC101_4h_R1 2 VQEKPDSPGGSTQIQR 16 1 M0R0P8;Q13459-2;Q13459;M0R300 M0R0P8 MYO9B Unconventional myosin-IXb 1 0 VQEKPDS(0.741)PGGS(0.129)T(0.129)QIQR;VQEKPDS(0.996)PGGS(0.004)TQIQR ; 171.87 3.12E-06 52262000 6604.2 5459.1 5448 6149.5 6320.6 5968.9 4693.5 5498.5 5365.5 5686.5 TRUE FALSE FALSE 5830.065687 5627.2884 5742.535359 6400.30319 5854.34193 5855.053177 4874.529867 6124.427014 5144.331819 5652.676445 1.03138146 0.995508668 1.015896702 1.132260665 1.035676106 1.035801931 0.862340152 1.083456142 0.9100701 1 12.46471841 VQIS(ph)PDSGGLPER ddPTM_HeLa_CUDC101_4h_R1 3 VQISPDSGGLPER 13 0 A0A087WTP3;Q92945;M0QXW7;M0QYH3 A0A087WTP3 KHSRP Far upstream element-binding protein 2 1 0 VQIS(0.985)PDS(0.015)GGLPER;VQIS(0.9)PDS(0.1)GGLPER;VQIS(0.921)PDS(0.079)GGLPER ;; 160.63 5.68E-05 186064000 7047.6 6934.1 6093.5 6577.9 6698.8 6361.6 6552.1 6448.3 6945 6561.3 TRUE FALSE FALSE 6221.491011 7147.731402 6422.933042 6846.175194 6204.64287 6240.263079 6804.816692 7182.348407 6658.72416 6522.273096 0.953883856 1.095895756 0.984769105 1.049660922 0.951300686 0.956762004 1.043319805 1.101203262 1.020920784 1 12.67115913 VRS(ph)LETENAGLR ddPTM_HeLa_CUDC101_4h_R1 4 VRSLETENAGLR 12 1 P02545;P02545-3;P02545-6;P02545-2;Q3BDU5 P02545;P02545-2 LMNA Prelamin-A/C;Lamin-A/C 1 0 VRS(0.999)LET(0.001)ENAGLR;VRS(0.998)LET(0.002)ENAGLR;VRS(0.997)LET(0.003)ENAGLR;VRS(0.993)LET(0.007)ENAGLR ;;; 88.78 0.012969 20057100 3054.04 3526.38 2765.75 2629.28 3789.85 2971.68 3105.04 2750.26 3404.35 2891.27 TRUE FALSE FALSE 2696.050061 3635.023588 2915.274811 2736.513403 3510.280316 2915.000155 3224.802433 3063.338481 3264.021252 2874.072597 0.938059137 1.264764012 1.014335829 0.952137885 1.221361047 1.014240266 1.122032351 1.065852854 1.135678081 1 11.48888079 VRS(ph)SPSGNTQSSPK ddPTM_HeLa_CUDC101_4h_R1 1 VRSSPSGNTQSSPK 14 1 O00512 O00512 BCL9 B-cell CLL/lymphoma 9 protein 1 0 VRS(0.485)S(0.485)PS(0.03)GNTQSSPK 62.94 0.036687 1299300 463.02 239.89 537.39 571.38 598.83 499.29 415.18 398.33 721.05 460.51 TRUE FALSE FALSE 408.7454975 247.2807266 566.4429289 594.6833461 554.6555039 489.7668751 431.1936317 443.6742771 691.3280138 457.770866 0.892904131 0.5401845 1.237394013 1.299085176 1.211644395 1.06989525 0.941942058 0.969206016 1.510205356 1 8.838481838 VS(ph)PPASPGP ddPTM_HeLa_CUDC101_4h_R1 1 VSPPASPGP 9 0 A0A0C4DGU2;Q9Y4U1 A0A0C4DGU2 MMACHC Methylmalonic aciduria and homocystinuria type C protein 1 0 VS(1)PPASPGP 93.598 0.010979 13933000 1609 1870.1 1212.7 1490.1 1223.7 1505.6 1249.3 1312.6 1575.6 1713.6 TRUE FALSE FALSE 1420.395459 1927.715564 1278.26223 1550.872719 1133.430089 1476.883189 1297.485919 1462.021078 1510.653101 1703.407431 0.833855385 1.131682021 0.750414849 0.910453184 0.665389893 0.867016993 0.761700281 0.858292063 0.886841911 1 10.73420783 VS(ph)PPASPTLEVELGSAELPLQGAVGPELPPGGGHGR ddPTM_HeLa_CUDC101_4h_R1 2 VSPPASPTLEVELGSAELPLQGAVGPELPPGGGHGR 36 0 Q7Z6J0 Q7Z6J0 SH3RF1 E3 ubiquitin-protein ligase SH3RF1 1 0 VS(0.979)PPAS(0.014)PT(0.007)LEVELGSAELPLQGAVGPELPPGGGHGR;VS(0.986)PPAS(0.012)PT(0.002)LEVELGSAELPLQGAVGPELPPGGGHGR ; 145.31 8.25E-24 32048000 1067.55 1458.04 897.45 992.64 1110.15 775.93 1043.34 1054.12 1060.97 1020.44 TRUE FALSE FALSE 942.4134073 1502.960484 945.9688616 1033.12415 1028.256446 761.130428 1083.581973 1174.11676 1017.236368 1014.370377 0.929062429 1.481668351 0.932567514 1.018488091 1.013689348 0.750347649 1.068231089 1.157483288 1.002825388 1 9.986368805 VSAGEPGSHPS(ph)PAPR ddPTM_HeLa_CUDC101_4h_R1 4 VSAGEPGSHPSPAPR 15 0 C9JME2;Q9Y4F1;Q9Y4F1-2;A0A1B0GV68 C9JME2;A0A1B0GV68 FARP1 "FERM, RhoGEF and pleckstrin domain-containing protein 1" 1 0 VS(0.001)AGEPGS(0.022)HPS(0.977)PAPR;VSAGEPGS(0.006)HPS(0.994)PAPR;VSAGEPGS(0.033)HPS(0.967)PAPR;VSAGEPGS(0.001)HPS(0.999)PAPR ;;; 213.69 8.84E-24 144089300 9676 7469.7 5155.68 6596.34 8426.7 8022 6840.31 5833.88 6105.4 6913.3 TRUE FALSE FALSE 8541.793948 7699.832603 5434.411656 6865.367257 7805.079129 7868.993716 7104.143048 6497.985318 5853.732828 6872.179384 1.242952704 1.120435334 0.790784313 0.999008738 1.135750203 1.145050686 1.033754018 0.945549433 0.851801517 1 12.74655198 VSDQNS(ph)PVLPK ddPTM_HeLa_CUDC101_4h_R1 3 VSDQNSPVLPK 11 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 0 VSDQNS(1)PVLPK;VSDQNS(1)PVLPK;VSDQNS(1)PVLPK ;; 161.87 9.88E-05 866980000 23592.6 16872.6 16789 16926.3 20261.1 19124 17580.9 16395.5 18012.2 17094.6 TRUE FALSE FALSE 20827.11119 17392.42481 17696.66412 17616.62768 18766.47902 18759.24156 18259.0012 18261.89745 17269.72949 16992.92056 1.225634588 1.02351004 1.041413927 1.036703939 1.104370432 1.103944522 1.074506359 1.074676798 1.016289662 1 14.05264621 VSEEQTQPPSPAGAGMS(ph)TAMGR ddPTM_HeLa_CUDC101_4h_R1 1 VSEEQTQPPSPAGAGMSTAMGR 22 0 H3BM18;X6RHM1;Q16666-3;Q16666-2;Q16666 H3BM18 IFI16 Gamma-interferon-inducible protein 16 1 0 VSEEQT(0.014)QPPS(0.106)PAGAGMS(0.817)T(0.062)AMGR 60.901 0.026438 19000000 1598.5 1480 2007 1584.4 1814.3 1731.9 1450.8 1966.2 1463.3 1865 TRUE FALSE FALSE 1411.126253 1525.597046 2115.504491 1649.01868 1680.462704 1698.866893 1506.757842 2190.02426 1402.982155 1853.906897 0.761163495 0.822909202 1.141106112 0.889483006 0.906443957 0.916371203 0.812747309 1.181302181 0.756770557 1 10.85635308 VSETS(ph)RT(ph)T(ph)T(ph)TSLSPELIR ddPTM_HeLa_CUDC101_4h_R1 1 VSETSRTTTTSLSPELIR 18 1 A0A0U1RRJ0;A0A0U1RQC5;Q9HDB5;Q9Y4C0 A0A0U1RRJ0 NRXN3 "Neurexin-3-beta;Neurexin-3-beta, soluble form;Neurexin-3-beta, C-terminal fragment;Neurexin-3" 4 0 VSET(0.482)S(0.616)RT(0.932)T(0.923)T(0.307)T(0.278)S(0.253)LS(0.21)PELIR 61.226 0.025164 11329000 664.67 850.44 652.03 1036.5 1463.1 1230.7 1004.1 651.68 1231.8 0 TRUE FALSE FALSE 586.7583902 876.6410484 687.2807141 1078.77295 1355.170028 1207.226448 1042.828473 725.864617 1181.024683 0 0 VSPAS(ph)PAGS(ph)PSADFAVHGESLGDR ddPTM_HeLa_CUDC101_4h_R1 1 VSPASPAGSPSADFAVHGESLGDR 24 0 A0A0A0MRP9;Q96C92-4;Q96C92-3;Q96C92-2;Q96C92 A0A0A0MRP9 SDCCAG3 Serologically defined colon cancer antigen 3 2 0 VS(0.024)PAS(0.976)PAGS(0.995)PS(0.005)ADFAVHGESLGDR 137.42 3.83E-08 44727000 1185 817.33 816.24 819.95 1144 1065 1051.6 925.3 1079.7 1047.2 TRUE FALSE FALSE 1046.096096 842.5109685 860.3684034 853.3911051 1059.609399 1044.686899 1092.160564 1030.632412 1035.194309 1040.971208 1.00492318 0.809350885 0.826505476 0.819802794 1.017904618 1.003569447 1.049174613 0.990068125 0.994450472 1 10.02371445 VSPKS(ph)PPTDQK ddPTM_HeLa_CUDC101_4h_R1 2 VSPKSPPTDQK 11 1 Q9BY89 Q9BY89 KIAA1671 Uncharacterized protein KIAA1671 1 0 VS(0.044)PKS(0.947)PPT(0.009)DQK;VS(0.03)PKS(0.969)PPT(0.001)DQK ; 74.853 0.028199 169228000 4097.3 3748.1 4762.5 4210.2 4290.6 3747.3 4053.9 4660.5 4146 4332.7 TRUE FALSE FALSE 3617.020705 3863.574518 5019.975156 4381.910154 3974.090986 3675.826496 4210.260281 5191.032482 3975.100125 4306.928908 0.839814351 0.897060203 1.165557933 1.017409446 0.922720359 0.853468115 0.977555091 1.205274708 0.922954665 1 12.07244379 VTLTS(ph)EEEAR ddPTM_HeLa_CUDC101_4h_R1 1 VTLTSEEEAR 10 0 P00338-3;P00338;P00338-4 P00338-3 LDHA L-lactate dehydrogenase A chain 1 0 VTLT(0.141)S(0.859)EEEAR 109.16 0.0086997 4194600 2924 2062.3 2668.2 2609.4 2994.8 2765.5 2487.1 2545 2940.8 2539.1 TRUE FALSE FALSE 2581.253152 2125.837019 2812.450963 2715.822611 2773.87957 2712.752695 2583.02828 2834.712513 2819.578979 2523.99732 1.022684585 0.842250109 1.114284449 1.076000592 1.099002581 1.074784301 1.023387885 1.123104407 1.117108547 1 11.30149466 VTS(ph)PTTYVLDEDEPR ddPTM_HeLa_CUDC101_4h_R1 3 VTSPTTYVLDEDEPR 15 0 J3KNS1;Q9UPW5-2;Q9UPW5;Q9UPW5-3 J3KNS1 AGTPBP1 Cytosolic carboxypeptidase 1 1 0 VT(0.019)S(0.843)PT(0.006)T(0.13)Y(0.002)VLDEDEPR;VT(0.013)S(0.986)PT(0.001)T(0.001)YVLDEDEPR;VT(0.045)S(0.955)PTTYVLDEDEPR ;; 241.76 5.57E-44 16107900 4300.3 3553.16 2956.9 3738.59 4218.7 3926.93 3729.25 2902.28 3294.64 3521.52 TRUE FALSE FALSE 3796.225353 3662.628648 3116.758958 3891.06586 3907.494906 3852.030353 3873.088422 3232.663824 3158.833545 3500.573842 1.084458013 1.046293783 0.890356581 1.111550858 1.116244102 1.100399685 1.10641529 0.923466828 0.902375921 1 11.77337572 VTSSMSS(ph)PSMQPK ddPTM_HeLa_CUDC101_4h_R1 1 VTSSMSSPSMQPK 13 0 A0A2R8Y7R9;Q13136-2;Q13136 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 0 VTSSMS(0.151)S(0.807)PS(0.042)MQPK 96.067 0.012283 17433000 2513.2 2517.8 2418.6 2349.8 3118.3 2259 2598.6 2465.2 2633 2899.3 TRUE FALSE FALSE 2218.606506 2595.370434 2549.356832 2445.635001 2888.269222 2215.913339 2698.828872 2745.828403 2524.466626 2882.054835 0.769800241 0.900527777 0.884562223 0.848573376 1.002156235 0.76886578 0.936425234 0.95273288 0.875925952 1 11.49288207 VVGQTTPES(ph)FEK ddPTM_HeLa_CUDC101_4h_R1 1 VVGQTTPESFEK 12 0 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 0 VVGQT(0.028)T(0.096)PES(0.876)FEK 152 0.00048011 34108000 2159 2452.7 1578.6 2260.9 1980.2 1815.8 1769 1855.1 2285.2 2073.2 TRUE FALSE FALSE 1905.925293 2528.26478 1663.943891 2353.109274 1834.124591 1781.16664 1837.230923 2066.277085 2191.003089 2060.868514 0.924816542 1.226795772 0.807399346 1.141804661 0.889976521 0.864279612 0.891483814 1.002624414 1.063145501 1 11.00903675 VVLAS(ph)ASPR ddPTM_HeLa_CUDC101_4h_R1 1 VVLASASPR 9 0 O95671;O95671-2 O95671 ASMTL N-acetylserotonin O-methyltransferase-like protein 1 0 VVLAS(0.5)AS(0.5)PR 107.45 0.0017247 0 3854.1 3039.1 2532.3 2945.7 3288 3093.7 2787.9 2632.8 2942.4 2825.2 TRUE FALSE FALSE 3402.32824 3132.731069 2669.203798 3065.838378 3045.450791 3034.692827 2895.430237 2932.50731 2821.113027 2808.395585 1.211484685 1.11548782 0.950437258 1.091668992 1.084409478 1.080578834 1.030990881 1.044193106 1.004528366 1 11.45553045 YSVQTADHR ddPTM_HeLa_CUDC101_4h_R1 1 YSVQTADHR 9 0 Q16658 Q16658 FSCN1 Fascin 0 0 126.31 0.0038628 3704600 5006.3 2505.7 1636.7 2804.5 2781.4 2882.8 2436.4 2461.5 2098.6 1235.7 FALSE FALSE TRUE 4419.469103 2582.897647 1725.184953 2918.879632 2576.221663 2827.815393 2530.372764 2741.70721 2012.09482 1228.350001 3.597890746 2.102737529 1.404473441 2.376260535 2.097302609 2.302125119 2.059977011 2.232024429 1.638046825 1 10.26250598 -1.118589109 17.75444839 2.184840568 2.189256412 0 0.66265621 0 0 0.124072581 0 0.076104597 1.118589109 0.004415844 YSYYDESQGEIYR ddPTM_HeLa_CUDC101_4h_R1 2 YSYYDESQGEIYR 13 0 Q9Y316-2;Q9Y316;Q9Y316-3 Q9Y316-2 MEMO1 Protein MEMO1 0 0 ; ; 131.12 0.0058762 12421700 6342.2 5653.9 4426.6 5028.3 5602.7 4587.2 5068.1 5580.2 5506.6 4866.7 FALSE FALSE TRUE 5598.77693 5828.089957 4665.915386 5233.375808 5189.399983 4499.706803 5263.578315 6215.427412 5279.615617 4837.752652 1.157309464 1.204710198 0.96447994 1.081778293 1.072688158 0.930123371 1.08802138 1.284775775 1.091336411 1 12.24012129 -4.271456449 5.159977167 1.068107225 1.293124986 0.412689361 0.078661007 0.129468596 11.28130744 0.012100963 0.101485766 5.35E-05 4.271456449 0.225017761 YTCGEAPDYDR ddPTM_HeLa_CUDC101_4h_R1 3 YTCGEAPDYDR 11 0 A0A0A0MTN3;P21266 A0A0A0MTN3 GSTM3 Glutathione S-transferase Mu 3 0 0 ;; ;; 197.21 1.72E-15 138986000 8072.9 6708.7 7547 6134.7 7675 7100.9 6092.5 6468.1 7734.4 4345.6 FALSE FALSE TRUE 7126.6069 6915.387095 7955.013648 6384.899582 7108.830541 6965.462163 6327.489766 7204.402359 7415.584758 4319.752178 1.649772164 1.600875886 1.841543987 1.478070806 1.64565703 1.612468002 1.464780734 1.667781406 1.716669025 1 12.07673283 -9.168140274 0.769311739 0.970614354 1.621103382 0 0.241168969 0.210525567 0.20995885 0.084117852 0.020327356 6.79E-10 9.168140274 0.650489029 YTGEDFDEDLR ddPTM_HeLa_CUDC101_4h_R1 2 YTGEDFDEDLR 11 0 Q14204;A0A2R8YFZ7;A0A2R8Y706;A0A2R8Y6H2 Q14204 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 0 ; ; 240.38 1.28E-42 64465000 6411.9 4446.4 4547.2 4558.4 6105.2 5320.6 5067.6 4102.8 5150.5 4524.9 FALSE FALSE TRUE 5660.306802 4583.388314 4793.035387 4744.311255 5654.831559 5219.11842 5263.05903 4569.846168 4938.19421 4497.985694 1.25840925 1.018986859 1.065595961 1.054763527 1.257191984 1.160323482 1.170092434 1.015976146 1.097867923 1 12.13506336 VVLASAS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 2 VVLASASPR 9 0 O95671;O95671-2 O95671 ASMTL N-acetylserotonin O-methyltransferase-like protein 1 0 VVLASAS(1)PR;VVLAS(0.001)AS(0.999)PR ; 122.94 0.0049903 33647000 7065.1 5394.1 4260.7 6221 5084.1 5385.6 4228.5 4714.8 4515.7 4376.3 TRUE FALSE FALSE 6236.939688 5560.285827 4491.04633 6474.719269 4709.056072 5282.878653 4391.594661 5251.513774 4329.560935 4350.269573 1.433690392 1.278147419 1.032360467 1.488348977 1.082474544 1.214379607 1.009499432 1.207169737 0.995239688 1 12.08688909 WKEPGSGGPQNLS(ph)GPGGR ddPTM_HeLa_CUDC101_4h_R1 2 WKEPGSGGPQNLSGPGGR 18 1 M0QZH1;M0QX70;M0QYR7;M0R2N0;M0QZC7;Q9H0W8-2;Q9H0W8 M0QZH1 SMG9 Protein SMG9 1 0 WKEPGS(0.001)GGPQNLS(0.999)GPGGR;WKEPGSGGPQNLS(1)GPGGR ; 116.74 9.63E-05 152656000 2996.4 2771.1 2632.8 2601 3068.3 2259.2 2527.3 2596.8 2634.4 2720.2 TRUE FALSE FALSE 2645.166534 2856.474306 2775.137132 2707.080022 2841.957622 2216.109524 2624.778808 2892.409215 2525.808917 2704.020129 0.978234779 1.056380563 1.026300471 1.001131609 1.051012007 0.819561031 0.970694996 1.069670001 0.934093977 1 11.40089018 WLEEADS(ph)SSGSPTSIDK ddPTM_HeLa_CUDC101_4h_R1 1 WLEEADSSSGSPTSIDK 17 0 P20265-3;P20265-2;P20265 P20265-3 POU3F2 "POU domain, class 3, transcription factor 2" 1 0 WLEEADS(0.484)S(0.387)S(0.064)GS(0.064)PT(0.002)SIDK 112.3 0.00014866 0 423.02 373.4 472.29 428.48 616.32 504.47 378.48 502.21 543.08 545.43 TRUE FALSE FALSE 373.4342369 384.9040114 497.823426 445.9552664 570.8553015 494.8480753 393.0781004 559.3795564 520.6940125 542.1857581 0.688757001 0.709911697 0.918178721 0.822513797 1.052877714 0.912691025 0.724987875 1.031712007 0.960360918 1 9.082643407 WNPVT(ph)GY(ph)T(ph)SS(ph)R ddPTM_HeLa_CUDC101_4h_R1 1 WNPVTGYTSSR 11 0 Q7Z6L1-3;Q7Z6L1-4 Q7Z6L1-3 4 0 WNPVT(0.896)GY(0.857)T(0.886)S(0.362)S(1)R 56.956 0.0033028 0 0 55.139 0 0 0 0 60.949 0 0 0 TRUE FALSE FALSE 0 56.83776723 0 0 0 0 63.29982335 0 0 0 0 WQS(ph)PVTK ddPTM_HeLa_CUDC101_4h_R1 1 WQSPVTK 7 0 A9Z1X7;M0R088 A9Z1X7 SRRM1 1 0 WQS(0.544)PVT(0.456)K 99.788 0.022153 1001600000 10635 9673.4 10552 9241.9 9305.6 8610.9 9648.3 8806.7 9320.2 9284.8 TRUE FALSE FALSE 9388.381422 9971.425988 11122.47304 9618.824629 8619.144427 8446.661429 10020.43816 9809.21913 8936.017411 9229.573597 1.01720641 1.080377754 1.205090671 1.042174325 0.933861607 0.915173528 1.085688094 1.062803067 0.96819396 1 13.17204828 YTQVGPDHNR ddPTM_HeLa_CUDC101_4h_R1 4 YTQVGPDHNR 10 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 0 ;;; ;;; 163.84 3.32E-05 41662700 17648.2 12643.3 14203.7 14914.4 14972.9 13978.9 13389.1 11467.5 14051.8 13837 FALSE FALSE TRUE 15579.50475 13032.82509 14971.59499 15522.6737 13868.379 13712.27577 13905.52207 12772.91385 13472.57886 13754.69691 1.132667979 0.947518159 1.088471457 1.128536223 1.008264965 0.99691588 1.010965357 0.928621978 0.97948933 1 13.74763673 -4.460337428 0.898894888 1.059569329 0.896535861 0.186036537 0.060865624 1.756181024 1.282797073 0.010271199 0.260720369 3.46E-05 4.460337428 -0.163033468 WRPHS(ph)PDGPR ddPTM_HeLa_CUDC101_4h_R1 4 WRPHSPDGPR 10 1 I1E4Y6;Q6Y7W6;Q6Y7W6-3;C9JH78;C9IYH5 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 0 WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR;WRPHS(1)PDGPR ;;; 82.505 0.01835 1290911000 18312.9 16087.9 17120.5 16663.6 17510.8 15864.2 13783.9 16079.9 15819.3 15471.6 TRUE FALSE FALSE 16166.28962 16583.54913 18046.08602 17343.21363 16219.06317 15561.61682 14315.54964 17910.37082 15167.22176 15379.57424 1.051153262 1.07828402 1.173380078 1.127678398 1.054584667 1.011836646 0.930815731 1.164555699 0.986192565 1 13.90872794 YVAQAHDK(ac)PR ddPTM_HeLa_CUDC101_4h_R1 1 YVAQAHDKPR 10 1 I3L0K7;Q12931-2;Q12931;I3L239 I3L0K7 TRAP1 "Heat shock protein 75 kDa, mitochondrial" 0 1 YVAQAHDK(1)PR 73.499 0.017767 0 262.12 127.46 42.558 267.28 239.06 230.22 301.33 158.77 246.87 205.42 FALSE TRUE FALSE 231.3946909 131.3868915 44.85881421 278.1808337 221.4250201 225.8289371 312.952399 176.843735 236.6939141 204.1981527 1.133186995 0.643428404 0.219682762 1.362308278 1.084363483 1.105930363 1.532591725 0.866039838 1.159138371 1 7.673826005 Y(ph)LPT(ph)Y(ph)RS(ph)YNDSVDPRIANVFTNAFR ddPTM_HeLa_CUDC101_4h_R1 1 YLPTYRSYNDSVDPRIANVFTNAFR 25 2 P05164-2;P05164;P05164-3 P05164-2 MPO Myeloperoxidase;Myeloperoxidase;89 kDa myeloperoxidase;84 kDa myeloperoxidase;Myeloperoxidase light chain;Myeloperoxidase heavy chain 4 0 Y(0.71)LPT(0.729)Y(0.793)RS(0.668)Y(0.734)NDS(0.364)VDPRIANVFT(0.002)NAFR 41.597 0.0027739 0 76.636 133.72 0 180.18 170.86 167.51 163.49 0 138.1 0 TRUE FALSE FALSE 67.65284425 137.8397547 0 187.5285192 158.2559982 164.3150258 169.7958641 0 132.4074595 0 0 YVATLGVEVHPLVFHTNR ddPTM_HeLa_CUDC101_4h_R1 2 YVATLGVEVHPLVFHTNR 18 0 F5H018;B5MDF5;J3KQE5;P62826;H0YFC6 F5H018 RAN GTP-binding nuclear protein Ran 0 0 ; ; 125.33 0.0013528 2302200 1009.12 815.93 896.28 871.72 721.46 906.08 719.95 405.13 808.46 958.32 FALSE FALSE TRUE 890.8324833 841.0678362 944.7356079 907.2725095 668.2393332 888.7980336 747.7187127 451.2483616 775.1349366 952.61987 0.935139515 0.882899741 0.991723601 0.952397213 0.701475325 0.933003879 0.784907744 0.473691948 0.813687559 1 9.895756831 -3.811033849 0.652179532 0.961291754 2.70E-35 0.618011827 0.095231735 1.988814182 0.389694988 0.01413163 1.626219239 0.000154513 3.811033849 -0.961291754 Y(ph)RITYQPS(ph)TGEGNEQT(ph)TT(ph)IGGR ddPTM_HeLa_CUDC101_4h_R1 1 YRITYQPSTGEGNEQTTTIGGR 22 1 H0Y4P7;A0A087X0A8;D6RGG3;Q99715-2;Q99715-4;Q99715 H0Y4P7 COL12A1 Collagen alpha-1(XII) chain 4 0 Y(0.355)RIT(0.297)Y(0.355)QPS(0.869)T(0.132)GEGNEQT(0.503)T(0.503)T(0.986)IGGR 52.685 0.0022293 0 712.55 413.61 592.97 580.38 927.25 679.46 544.9 596.91 729.72 668.25 TRUE FALSE FALSE 629.0259692 426.3528339 625.0277518 604.050405 858.8486148 666.5004326 565.9169755 664.8598216 699.6406327 664.2752193 0.946935774 0.641831611 0.940916857 0.909337557 1.292910815 1.003349836 0.851931487 1.00088006 1.053239098 1 9.375637286 YVDIAIPCNNK ddPTM_HeLa_CUDC101_4h_R1 2 YVDIAIPCNNK 11 0 C9J9K3;A0A0C4DG17;P08865 C9J9K3 RPSA 40S ribosomal protein SA 0 0 ; ; 134.25 0.0070771 1079110 1129.66 1093.35 1118.88 1394 1165.84 1097.54 1106.92 1349.51 1217.97 765.72 FALSE FALSE TRUE 997.2429673 1127.034818 1179.370037 1450.853345 1079.838306 1076.606253 1149.614275 1503.132763 1167.764761 761.1654634 1.310152674 1.480669935 1.549426628 1.906094555 1.418664348 1.414418159 1.510334258 1.974777937 1.534179909 1 9.572066293 -7.768769535 0.5625338 1.020618767 1.642068885 0.18368159 0.237919366 0.341765198 0.255092254 0.078569028 0.061242575 1.70E-08 7.768769535 0.621450118 Y(ph)S(ph)S(ph)S(ph)GTPSSASPALSR ddPTM_HeLa_CUDC101_4h_R1 1 YSSSGTPSSASPALSR 16 0 Q14934-18;Q14934-17;Q14934-3;Q14934-4;Q14934-5;Q14934-6;Q14934-7;Q14934;Q14934-8;Q14934-9;Q14934-10;Q14934-11;Q14934-12;Q14934-13;Q14934-14;Q14934-15;Q14934-16;Q14934-2 Q14934-18 NFATC4 "Nuclear factor of activated T-cells, cytoplasmic 4" 4 0 Y(0.786)S(0.762)S(0.795)S(0.789)GT(0.355)PS(0.274)S(0.23)AS(0.007)PALS(0.003)R 71.316 0.011129 5284900 0 0 0 0 0 0 0 0 0 0 TRUE FALSE FALSE 0 0 0 0 0 0 0 0 0 0 0 Y(ph)S(ph)Y(ph)GHLPT(ph)HSIT(ph)AHPMVTIRISDRQR ddPTM_HeLa_CUDC101_4h_R1 1 YSYGHLPTHSITAHPMVTIRISDRQR 26 2 O43149;I3L141;O43149-2 O43149 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 5 0 Y(0.918)S(0.923)Y(0.918)GHLPT(0.923)HS(0.612)IT(0.673)AHPMVT(0.016)IRIS(0.016)DRQR 45.011 0.015242 20617000 131.29 0 0 0 0 0 63.121 172.17 140.78 0 TRUE FALSE FALSE 115.9003852 0 0 0 0 0 65.55559811 191.7691369 134.9769888 0 0 YAWASEEDDASS(ph)LTADNLEK ddPTM_HeLa_CUDC101_4h_R1 1 YAWASEEDDASSLTADNLEK 20 0 Q9UPN4-3;Q9UPN4-2 Q9UPN4-3 CEP131 Centrosomal protein of 131 kDa 1 0 YAWASEEDDAS(0.102)S(0.897)LT(0.001)ADNLEK 167.45 5.55E-07 7550800 1102.8 1103.6 937.16 1095.8 1389.4 927.28 779.5 961.52 1226 1094.6 TRUE FALSE FALSE 973.5314557 1137.600608 987.8257044 1140.49146 1286.90673 909.593679 809.5655761 1070.97555 1175.463761 1088.089271 0.894716529 1.04550301 0.907853548 1.048159826 1.182721643 0.835955012 0.74402496 0.984271768 1.080300847 1 10.08758121 YVTAFNGELEDYMSDR ddPTM_HeLa_CUDC101_4h_R1 1 YVTAFNGELEDYMSDR 16 0 F5H8D7 F5H8D7 XRCC1 0 0 95.264 0.033591 3754900 374.86 347.9 329.59 382.17 500.26 329.66 304.47 340.56 298.88 366.65 FALSE FALSE TRUE 330.9194791 358.6183866 347.4086324 397.7565445 463.3568165 323.3722848 316.2135099 379.3279738 286.5600399 364.4691495 0.907949217 0.983947166 0.953190779 1.091331173 1.271319718 0.887241856 0.867600208 1.040768401 0.786239495 1 8.509652893 -10.16387046 3.447735649 1.000789214 0.976917132 0 0.132164547 2.259576099 49.56666998 0.111729938 0.017095417 6.86E-11 10.16387046 -0.023872082 YVVACK(ac)EPK ddPTM_HeLa_CUDC101_4h_R1 2 YVVACKEPK 9 1 Q96ES7;H3BN84 Q96ES7 CCDC101 SAGA-associated factor 29 homolog 0 1 ; YVVACK(1)EPK;YVVACK(1)EPK 172.94 0.0023257 6486800 7508 5418 3977 5330.9 5457.1 5229 4769 4599.8 3175.1 1652.38 FALSE TRUE FALSE 6627.923621 5584.922158 4192.00865 5548.317144 5054.540605 5129.265537 4952.941928 5123.422639 3044.221034 1642.55157 4.03513883 3.400150266 2.552132137 3.377864808 3.077249261 3.122742464 3.015395082 3.119185255 1.853348832 1 10.68172295 -9.426699784 1.122145074 0.98340651 3.262656369 0.723170023 0.43118209 0.170197605 0.378887959 0.306085823 0.074714581 3.74E-10 9.426699784 2.279249859 YVWLVYEQDRPLKCDEPILSNR ddPTM_HeLa_CUDC101_4h_R1 1 YVWLVYEQDRPLKCDEPILSNR 22 2 P30086 P30086 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide 0 0 64.26 0.0042636 15484000 230.6 586.79 467.53 441.73 453.08 429.3 424.43 318.15 326.93 602.21 FALSE FALSE TRUE 203.5694176 604.8683044 492.806086 459.7456587 419.6571911 421.1118178 440.8004073 354.36691 313.453807 598.6280281 0.34005995 1.010424297 0.823225881 0.767998886 0.701031645 0.703461579 0.7363511 0.591965116 0.523620332 1 9.225516018 -4.256979414 20.56903027 0.722578362 0.591964534 0.045178376 0.18945581 152.9538777 705035.7882 0.034383269 0.341628105 5.53E-05 4.256979414 -0.130613827 YWCDAEYDAYRR ddPTM_HeLa_CUDC101_4h_R1 3 YWCDAEYDAYRR 12 1 O15027;O15027-5;F1T0I1;O15027-2;O15027-4;O15027-3;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 O15027 SEC16A Protein transport protein Sec16A 0 0 ;; ;; 98.898 0.013112 29332100 7132.7 6269.7 5211.4 5872.4 6690.4 6849.5 6604.5 5510.7 7286.5 6463.3 FALSE FALSE TRUE 6296.615718 6462.862026 5493.144048 6111.901855 6196.862521 6718.8572 6859.237777 6138.015813 6986.147386 6424.856004 0.980039975 1.005915467 0.854983216 0.951290091 0.964513838 1.045759966 1.067609573 0.955354612 1.087362484 1 12.64944841 -5.265806729 24.79263777 0.976596464 1.027378203 0.103811506 0.060339319 446.9804476 2537441.541 0.007246031 0.016735086 5.42E-06 5.265806729 0.050781739 YFEGEFTGLPPALT(ph)PPAPHSLLTAR ddPTM_HeLa_CUDC101_4h_R1 2 YFEGEFTGLPPALTPPAPHSLLTAR 25 0 Q6P5Z2 Q6P5Z2 PKN3 Serine/threonine-protein kinase N3 1 0 YFEGEFTGLPPALT(1)PPAPHSLLTAR;YFEGEFTGLPPALT(1)PPAPHSLLTAR ; 133.75 1.01E-10 137413000 4067.9 3048.88 2874.62 3423 3762.7 3138.98 3441.62 3445.5 3548 3557.6 TRUE FALSE FALSE 3591.066929 3142.812379 3030.030652 3562.604735 3485.133117 3079.109186 3574.364436 3837.721793 3401.749938 3536.439237 1.015447089 0.888694013 0.85680269 1.007398826 0.985492153 0.870680642 1.01072412 1.08519376 0.961913866 1 11.78808176 YWLCAATGPSIK ddPTM_HeLa_CUDC101_4h_R1 1 YWLCAATGPSIK 12 0 D6RAC2;P63244;H0YAF8;J3KPE3;D6REE5;D6RF23;H0Y8R5;H0YAM7;H0Y8W2;H0Y9P0 D6RAC2 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed" 0 0 147.74 0.0017382 282600 183.8 148.71 150.01 164.19 65.447 146.63 218.4 123.72 126.06 0 FALSE FALSE TRUE 162.2552426 153.2915788 158.1199944 170.8863779 60.6191052 143.8332771 226.8237612 137.8037847 120.8637534 0 0 YWLEEAECR ddPTM_HeLa_CUDC101_4h_R1 3 YWLEEAECR 9 0 P55884;P55884-2;C9JZG1;C9JQN7 P55884 EIF3B Eukaryotic translation initiation factor 3 subunit B 0 0 ;; ;; 136.27 0.013093 46528400 6236.6 5579.7 4943.1 5095.5 6330.9 5595.6 5005 4671.2 5841.3 3936.58 FALSE FALSE TRUE 5505.555202 5751.603943 5210.338938 5303.316515 5863.88212 5488.873253 5198.044527 5202.950526 5600.519142 3913.165047 1.406931508 1.469808678 1.331489696 1.355249894 1.498501098 1.402668476 1.328347888 1.329601605 1.431199317 1 11.93412025 -9.155658677 0.757921091 0.980607112 1.393852265 0 0.143528453 0.205716985 0.199062088 0.051688116 0.012516809 6.99E-10 9.155658677 0.413245153 YWPQEAGEYAVHVLCNSEDIR ddPTM_HeLa_CUDC101_4h_R1 2 YWPQEAGEYAVHVLCNSEDIR 21 0 P21333-2;P21333;Q60FE5;A0A087WWY3 P21333-2 FLNA Filamin-A 0 0 ; ; 167.97 1.20E-08 88382000 1339.41 917.52 926.89 849.7 830.73 911.93 1196.65 1158.44 827.47 1026.9 FALSE FALSE TRUE 1182.40639 945.7877037 977.0004771 884.3544387 769.4487029 894.5364546 1242.805191 1290.312127 793.3613364 1020.791953 1.158322601 0.926523471 0.957100489 0.866341507 0.753776223 0.876316131 1.217491172 1.264030465 0.777201793 1 9.995473146 -4.642254833 7.045031305 1.009014979 1.251432992 0.344880692 0.137509061 0.200540573 11.32212724 0.020524842 0.078029688 2.28E-05 4.642254833 0.242418012 YWQQVIDMNDYQR ddPTM_HeLa_CUDC101_4h_R1 2 YWQQVIDMNDYQR 13 0 O60701;O60701-3;O60701-2 O60701 UGDH UDP-glucose 6-dehydrogenase 0 0 ; ; 118.03 0.012063 40715000 1528.74 1775.37 1389.78 1529.63 1585.76 1587.31 1206.37 1430.37 1600.51 1822.17 FALSE FALSE TRUE 1349.543415 1830.067045 1464.915711 1592.014923 1468.781644 1557.034706 1252.900095 1593.197539 1534.5363 1811.331652 0.745055944 1.010343436 0.808750683 0.878919618 0.810884988 0.859607739 0.691701099 0.879572516 0.847186819 1 10.82283501 -9.525624225 1.225915789 1.001924067 0.826364716 0.02573314 0.093234061 0.39394165 1.040994657 0.059181001 0.013536218 2.98E-10 9.525624225 -0.175559351 YFTAYTENGRY(ph)S(ph)LKVR ddPTM_HeLa_CUDC101_4h_R1 1 YFTAYTENGRYSLKVR 16 2 Q14CN2 Q14CN2 CLCA4 "Calcium-activated chloride channel regulator 4;Calcium-activated chloride channel regulator 4, 110 kDa form;Calcium-activated chloride channel regulator 4, 30 kDa form" 2 0 YFTAYTENGRY(1)S(1)LKVR 61.419 0.0033185 0 1435.9 987.71 811.37 593.58 1510.4 1358.1 1319.8 1097.6 1186.6 1056 TRUE FALSE FALSE 1267.585979 1018.140174 855.2351165 617.7887581 1398.980801 1332.196505 1370.705128 1222.546347 1137.687846 1049.718865 1.20754806 0.969917002 0.814727776 0.588527823 1.3327195 1.269098374 1.305783076 1.164641685 1.08380242 1 10.03578728 YYDILK(ac)K ddPTM_HeLa_CUDC101_4h_R1 1 YYDILKK 7 1 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 1 YYDILK(1)K 100.45 0.018118 687910 1010.6 759.17 634.64 658.4 930.93 818.19 1081.5 844.64 863.16 620.29 FALSE TRUE FALSE 892.139 782.5591279 668.9505581 685.2523978 862.2571486 802.5843889 1123.213817 940.7904034 827.5801795 616.6004875 1.446867166 1.269151004 1.084901118 1.111339371 1.398404909 1.301627886 1.821623304 1.525769802 1.342165951 1 9.26819222 -1 0.036799419 1.09E-10 3.493494349 0.263483677 0.195662833 680.8253423 1.932320225 53.2689414 155.6622574 0.1 1 3.493494349 YYDSRPGGYGYGYGR ddPTM_HeLa_CUDC101_4h_R1 2 YYDSRPGGYGYGYGR 15 1 P98179 P98179 RBM3 RNA-binding protein 3 0 0 ; ; 141.34 0.00051171 254200000 8836 7938.8 7351.1 7386.8 8329.6 6987.6 6445.7 7324.9 6949.1 5523.7 FALSE FALSE TRUE 7800.257475 8183.385018 7748.522702 7688.065632 7715.142003 6854.323172 6694.312808 8158.737008 6662.655157 5490.844787 1.420593329 1.49036903 1.411171323 1.400160801 1.405091985 1.248318508 1.219177206 1.485880101 1.213411673 1 12.42281241 -9.195446568 0.895576941 0.995500874 1.380918726 0.490506757 0.105103213 0.255177858 0.36207521 0.064797132 0.017482331 6.38E-10 9.195446568 0.385417852 YYDVMSDEEIER ddPTM_HeLa_CUDC101_4h_R1 3 YYDVMSDEEIER 12 0 O15460-2;O15460 O15460-2 P4HA2 Prolyl 4-hydroxylase subunit alpha-2 0 0 ;; ;; 202.56 7.17E-16 20832600 2865.64 2709.77 2357.85 2777.02 3079.84 2877.44 2780.86 2636.6 2778.31 2657.37 FALSE FALSE TRUE 2529.734023 2793.254802 2485.322503 2890.278879 2852.646339 2822.557626 2888.118702 2936.739886 2663.786886 2641.563845 0.957665297 1.057424679 0.94085271 1.094154466 1.079908155 1.068517663 1.093336702 1.111742914 1.008412835 1 11.36717656 -6.248505923 24.86832767 0.983868913 1.088041241 0.69888462 0.031439771 283.4348281 544985.5577 0.004622686 0.007633223 5.64E-07 6.248505923 0.104172328 YLLSQS(ph)SPAPLTAAEEELR ddPTM_HeLa_CUDC101_4h_R1 1 YLLSQSSPAPLTAAEEELR 19 0 F8VS81;Q12792-4;Q12792;Q12792-3 F8VS81 TWF1 Twinfilin-1 1 0 YLLS(0.125)QS(0.773)S(0.102)PAPLTAAEEELR 98.002 0.0011811 1574500 657.14 685.76 849.97 561.02 535.03 799.97 515.47 479.58 1060.3 705.33 TRUE FALSE FALSE 580.1110454 706.8874528 895.9219492 583.9008205 495.5619028 784.7119051 535.3518506 534.1734487 1016.593985 701.1346658 0.827388908 1.008204967 1.27781722 0.832794111 0.706799887 1.119202834 0.76355068 0.761869973 1.449926861 1 9.453547757 YLLSQSS(ph)PAPLTAAEEELR ddPTM_HeLa_CUDC101_4h_R1 4 YLLSQSSPAPLTAAEEELR 19 0 F8VS81;Q12792-4;Q12792;Q12792-3 F8VS81 TWF1 Twinfilin-1 1 0 YLLSQS(0.067)S(0.933)PAPLTAAEEELR;YLLS(0.001)QS(0.133)S(0.86)PAPLT(0.006)AAEEELR;YLLSQS(0.119)S(0.881)PAPLTAAEEELR;YLLS(0.003)QS(0.134)S(0.842)PAPLT(0.022)AAEEELR ;;; 195.17 7.87E-17 91382100 6268.22 5988.58 4713.25 5091.28 6469.1 5911.02 5174.94 4720.33 5486.26 5682.12 TRUE FALSE FALSE 5533.468754 6173.081052 4968.062552 5298.924405 5991.887381 5798.277142 5374.539169 5257.673287 5260.114041 5648.322498 0.979665866 1.092905204 0.879564252 0.938141264 1.060826003 1.026548527 0.951528382 0.930838012 0.931270132 1 12.46360675 YYITIIDAPGHR ddPTM_HeLa_CUDC101_4h_R1 3 YYITIIDAPGHR 12 0 A0A2U3TZH3;Q05639;A0A2R8Y488;A0A2R8Y660;A0A2R8YDN5 A0A2U3TZH3 EEF1A2 Elongation factor 1-alpha 2 0 0 ;; ;; 121.02 0.00030244 1916860 3765.42 4041.57 4059.36 3541.83 4584.53 4199.32 3745.83 4236.73 4604.22 5440.76 FALSE FALSE TRUE 3324.043176 4166.085981 4278.82128 3686.281136 4246.338356 4119.224968 3890.307918 4719.022218 4414.432103 5408.398118 0.614607709 0.770299429 0.791143919 0.68158465 0.785137903 0.761634938 0.719308718 0.872536029 0.816218038 1 12.40098564 -9.505140632 1.247087417 1.000360425 0.734778365 0.260255351 0.085821005 0.2258582 0.627335208 0.051070774 0.012286856 3.13E-10 9.505140632 -0.26558206 YYK(ac)VDENGK ddPTM_HeLa_CUDC101_4h_R1 2 YYKVDENGK 9 1 A0A2R8Y422;P62979 A0A2R8Y422 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 0 1 ; YYK(1)VDENGK;YYK(1)VDENGK 182.65 0.00031972 7063900 5747.1 3661.8 3444 3743.2 5994.3 5815 6278.4 6518.1 5451.8 4029.2 FALSE TRUE FALSE 5073.43365 3774.615718 3630.193058 3895.863875 5552.112431 5704.088563 6520.559991 7260.094157 5227.074496 4005.234139 1.26670089 0.942420739 0.906362258 0.972693166 1.386214198 1.42415858 1.62800969 1.812651622 1.305060907 1 11.96767087 -5.053725632 1.263058721 1.088894033 1.78761773 0.767414785 0.141567157 0.214851601 0.577994038 0.023445779 0.132882129 8.84E-06 5.053725632 0.698723697 YLQAHTQSVYNYHLS(ph)PR ddPTM_HeLa_CUDC101_4h_R1 1 YLQAHTQSVYNYHLSPR 17 0 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 0 YLQAHTQSVYNYHLS(1)PR 116.94 0.00028455 19160000 1583.2 1053.4 1140 742.66 1781.8 1484.7 1852.7 1321.4 1534.1 1421.3 TRUE FALSE FALSE 1397.619696 1085.854005 1201.631848 772.9488849 1650.360164 1456.381821 1924.15926 1471.822835 1470.863749 1412.846044 0.989222925 0.768557912 0.85050445 0.54708642 1.168110404 1.03081424 1.361902995 1.041743253 1.041064421 1 10.46438855 YYLHDDR ddPTM_HeLa_CUDC101_4h_R1 2 YYLHDDR 7 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 0 0 ; ; 87.323 0.033732 46655000 8166.3 6144.2 5359.4 5872.5 5530.2 5622.8 4527.6 4524.2 5866.3 5049.5 FALSE FALSE TRUE 7209.058693 6333.495519 5649.145375 6112.005933 5122.248164 5515.554458 4702.231049 5039.216641 5624.488631 5019.465349 1.436220432 1.261786879 1.125447629 1.217660748 1.020476845 1.098833058 0.936799185 1.003934939 1.120535404 1 12.29331799 -5.605918632 1.328065641 1.212544295 0.987774489 0.354943414 0.113981675 0.507137506 1.750836257 0.026572111 0.078779259 2.48E-06 5.605918632 -0.224769806 YRS(ph)PYSGPK ddPTM_HeLa_CUDC101_4h_R1 3 YRSPYSGPK 9 1 Q14498-2;Q14498;G3XAC6;Q5QP22;Q5QP23 Q14498-2 RBM39 RNA-binding protein 39 1 0 YRS(1)PYSGPK;Y(0.003)RS(0.997)PYSGPK;Y(0.004)RS(0.996)PYSGPK ;; 92.792 0.013893 3881840000 19932.4 17991.9 17629.5 18813.2 18641.1 17711.4 17707.4 17090.8 18566.6 18945.3 TRUE FALSE FALSE 17595.95429 18546.20911 18582.6041 19580.48361 17265.98319 17373.58455 18390.38035 19036.34759 17801.27689 18832.61251 0.934334218 0.984792158 0.986724709 1.03971149 0.916812958 0.922526524 0.976517747 1.010818206 0.94523672 1 14.20094553 YYPTEDVPR ddPTM_HeLa_CUDC101_4h_R1 1 YYPTEDVPR 9 0 Q02878;F8VZ45;U3KQR5;F8VR69 Q02878 RPL6 60S ribosomal protein L6 0 0 120.87 0.030399 28464000 3361.1 2947.2 3146 3361.7 3172.4 2821.4 2840 3327.5 3444.7 2737.7 FALSE FALSE TRUE 2967.116953 3037.999739 3316.082276 3498.804657 2938.378372 2767.586496 2949.539751 3706.28915 3302.708008 2721.416039 1.090284216 1.116330504 1.218513535 1.285655926 1.079724059 1.0169656 1.083825372 1.361897298 1.213599083 1 11.41014181 -7.899533102 0.82839969 1.016069532 1.161578967 0 0.115839536 0.528702116 0.786023087 0.03061711 0.024466286 1.26E-08 7.899533102 0.145509436 YS(ph)PTVQTR ddPTM_HeLa_CUDC101_4h_R1 1 YSPTVQTR 8 0 O60437;K7EKI8 O60437 PPL Periplakin 1 0 Y(0.021)S(0.969)PT(0.01)VQTR 115.23 0.0091934 13705000 2616.6 3083.8 2694.2 2478 3097.2 2722.2 2464.8 2252.7 2964.5 2604.7 TRUE FALSE FALSE 2309.886115 3178.808223 2839.856602 2579.063551 2868.725726 2670.27857 2559.868162 2509.138262 2842.302055 2589.207129 0.892121024 1.22771492 1.096805493 0.996082361 1.107955287 1.0313113 0.988668745 0.969075913 1.097749973 1 11.33829467 YSCPESPSQELGGPLPS(ph)PGPR ddPTM_HeLa_CUDC101_4h_R1 2 YSCPESPSQELGGPLPSPGPR 21 0 A0A494BZV2;A0A1W2PPU9 A0A494BZV2 1 0 YSCPESPSQELGGPLPS(1)PGPR;YSCPESPSQELGGPLPS(1)PGPR ; 152.64 1.33E-09 9846700 912.02 1217.51 1183.01 1189.03 1520.42 1408.85 1488.27 1249.91 1356.26 903.98 TRUE FALSE FALSE 805.1143981 1255.02004 1246.967099 1237.523783 1408.261646 1381.978534 1545.673072 1392.194702 1300.354389 898.6030868 0.8959622 1.396634464 1.387672842 1.377163957 1.567167603 1.537918747 1.720084312 1.549287692 1.447084267 1 9.811540207 YSS(ph)YQGSR ddPTM_HeLa_CUDC101_4h_R1 1 YSSYQGSR 8 0 Q5VWV2;Q8TEW0-11;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-2;Q8TEW0;Q8TEW0-5 Q5VWV2 PARD3 Partitioning defective 3 homolog 1 0 YS(0.144)S(0.856)YQGSR 101.3 0.0023995 0 1020 1202.8 1178.4 1491.8 821.39 813.95 834.82 705.58 840.38 834.97 TRUE FALSE FALSE 900.4371462 1239.856842 1242.107868 1552.642052 760.7976961 798.4252599 867.019287 785.9003751 805.7391807 830.0035613 1.084859377 1.493797015 1.496509083 1.870645048 0.916619797 0.961954017 1.044597069 0.946863859 0.970765932 1 9.696973716 YSSSSIPEPFGS(ph)RGSPR ddPTM_HeLa_CUDC101_4h_R1 1 YSSSSIPEPFGSRGSPR 17 1 Q8WUF5;K7EN03 Q8WUF5 PPP1R13L RelA-associated inhibitor 1 0 YSSSSIPEPFGS(0.5)RGS(0.5)PR 115.58 0.0028407 33297000 2252.5 2253.2 1996.7 1850.8 2513.9 1859.3 2087.1 2057.7 2200.5 2083 TRUE FALSE FALSE 1988.465365 2322.618421 2104.647642 1926.283624 2328.454605 1823.83695 2167.600146 2291.94025 2109.794459 2070.610223 0.960328188 1.121707212 1.016438351 0.930297553 1.124525794 0.880820992 1.046841227 1.106891208 1.018924004 1 11.01584029 YVDEENS(ph)DGETSNHR ddPTM_HeLa_CUDC101_4h_R1 4 YVDEENSDGETSNHR 15 0 A0A494C108;Q8N9T8;H0YFD2;F8WFC1;H0YH26 A0A494C108 KRI1 Protein KRI1 homolog 1 0 YVDEENS(1)DGETSNHR;YVDEENS(1)DGETSNHR;YVDEENS(1)DGETSNHR;YVDEENS(1)DGETSNHR ;;; 204.94 1.81E-17 117598500 15299.6 8466.3 8954.3 7454.9 16328.5 13280.3 12649.6 11880.9 14292.2 11959.9 TRUE FALSE FALSE 13506.20408 8727.136668 9438.396543 7758.943045 15123.97909 13027.0004 13137.49931 13233.37363 13703.06947 11888.76198 1.136047984 0.73406606 0.793892296 0.652628344 1.272123969 1.095740702 1.105035102 1.113099383 1.152606931 1 13.53731087 YYSDS(ph)DDELTVEQR ddPTM_HeLa_CUDC101_4h_R1 2 YYSDSDDELTVEQR 14 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 0 YYS(0.001)DS(0.999)DDELTVEQR;YYS(0.011)DS(0.989)DDELTVEQR ; 294 1.19E-122 23487000 2786.55 2738.04 2507.7 2114.84 2588.99 2336.57 2072.23 2077.35 2248.01 2239.44 TRUE FALSE FALSE 2459.914833 2822.395767 2643.273847 2201.092316 2398.005366 2292.00382 2152.156605 2313.827127 2155.346076 2226.119711 1.105023607 1.267854443 1.187390702 0.98875739 1.077213123 1.029595942 0.966774875 1.039399236 0.968207624 1 11.12031546 YYTVFDRDNNR ddPTM_HeLa_CUDC101_4h_R1 1 YYTVFDRDNNR 11 1 H7C1V0;H7C469;A0A1B0GW44;A0A1B0GVP3;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339 H7C1V0 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain 0 0 93.442 0.025086 25801000 2143.7 1834.3 1553.9 2350.3 2275.6 1829.4 1885.5 1843.5 2245.8 1125.6 FALSE FALSE TRUE 1892.418736 1890.812609 1637.908534 2446.155393 2107.733522 1794.507243 1958.224367 2053.356588 2153.227173 1118.904881 1.691313326 1.68987788 1.463849664 2.186204953 1.883746829 1.603806788 1.750125859 1.835148477 1.924405917 1 10.12787168 -9.175323324 0.439793587 0.806156072 1.813389727 0 0.337299282 0.731607665 0.197585717 0.333717974 0.055672107 6.68E-10 9.175323324 1.007233655 YYVTIIDAPGHR ddPTM_HeLa_CUDC101_4h_R1 5 YYVTIIDAPGHR 12 0 Q5VTE0;P68104;A0A087WVQ9;A0A087WV01;A6PW80;Q5JR01 Q5VTE0 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 0 0 ;;;; ;;;; 169.82 1.40E-06 575617100 15731.7 15267.4 15399.9 14293.2 17063 14881.9 15047.6 14246.8 16790.8 18559.9 FALSE FALSE TRUE 13887.65397 15737.7705 16232.46518 14876.13848 15804.29648 14598.05255 15627.99097 15868.59812 16098.67612 18449.50489 0.752738572 0.853018582 0.879832021 0.806316406 0.856624423 0.791243594 0.847068312 0.8601097 0.872580387 1 14.17129448 -9.476224934 1.18875044 1.000977312 0.824276535 0.289492776 0.052535931 0.202497515 0.507422226 0.029523775 0.007080536 3.34E-10 9.476224934 -0.176700777